BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780870|ref|YP_003065283.1| prolyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (449 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|227821637|ref|YP_002825607.1| prolyl-tRNA synthetase [Sinorhizobium fredii NGR234]
 gi|227340636|gb|ACP24854.1| prolyl-tRNA synthetase [Sinorhizobium fredii NGR234]
          Length = 501

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 279/438 (63%), Positives = 354/438 (80%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLRTGMI Q S GIYSWLPLG++ LD VNAIIREE
Sbjct: 60  MRLSRYFMPILKENPKEAEIVSHRLMLRTGMIRQQSAGIYSWLPLGKRVLDKVNAIIREE 119

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GA+E+ +PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 120 QNRSGAVELLMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMITDIFRS 179

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYRNLP   Y IQLKFRDE+RPRFG MRSREFLMKDAYSFDL  EG++H+YNKMF +
Sbjct: 180 SVKSYRNLPLNLYHIQLKFRDEIRPRFGTMRSREFLMKDAYSFDLDREGAEHAYNKMFAA 239

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGG+LSHEFI+LADTGE++V+C KDF+ F IP ++T+FD
Sbjct: 240 YLRTFDRMGLRAIPMRADTGPIGGNLSHEFIILADTGESEVYCHKDFLGFDIPGKDTNFD 299

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L +I ++WT+ YAATS++H+E  FD++ E ++VSARGIEVGHIFYFGTKYS  M A
Sbjct: 300 DVAGLKAIFDKWTSRYAATSEMHDEAAFDAISEGEKVSARGIEVGHIFYFGTKYSEAMGA 359

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF   +IN+K  D  
Sbjct: 360 KVLGPDGKEHIVHMGSYGIGPTRLVPAIIEASHDENGIIWPKSVAPFDAVVINMKTGDAA 419

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC  +Y+ L K G DV  DD  ++ G++FA ADL+G P+Q+IVG + +++ +VE+K 
Sbjct: 420 CDAACGTLYSDLGKAGFDVLLDDTDDRAGAKFATADLIGVPVQIIVGPRSIANGEVEVKD 479

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 480 RKTGERETMTVEAAINKL 497


>gi|254780870|ref|YP_003065283.1| prolyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040547|gb|ACT57343.1| prolyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 449

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 449/449 (100%), Positives = 449/449 (100%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE
Sbjct: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS
Sbjct: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS
Sbjct: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD
Sbjct: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA
Sbjct: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV
Sbjct: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH
Sbjct: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           RLTGIREDMSLEEVINYASHRFSNNRPVL
Sbjct: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449


>gi|222085595|ref|YP_002544125.1| prolyl-tRNA synthetase protein [Agrobacterium radiobacter K84]
 gi|221723043|gb|ACM26199.1| prolyl-tRNA synthetase protein [Agrobacterium radiobacter K84]
          Length = 475

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 286/439 (65%), Positives = 363/439 (82%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VN IIREE
Sbjct: 36  MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNKIIREE 95

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 96  QNRSGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMITDIFRS 155

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG+  +YNKMF +
Sbjct: 156 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTQEGAVIAYNKMFAA 215

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF++F IPSE+T+FD
Sbjct: 216 YLRTFDRLGLRAIPMRADTGPIGGELSHEFIILADTGESEVFCHKDFVNFDIPSEDTNFD 275

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L  I ++WT+ YAATS++H+E  F+++PE +R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 276 DVAGLKGIFDKWTSLYAATSEMHDEATFNAIPEGERLSARGIEVGHIFYFGTKYSEPMGA 335

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF + +IN+K+ DQ 
Sbjct: 336 KVQGPDGKEHAVHMGSYGIGPTRLVPAIIEASHDENGIIWPASVAPFDVVVINMKSGDQA 395

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE IYA LSK G DV +DD  ++ G++FA ADL+G P+Q+IVG + ++  +VE+K 
Sbjct: 396 CDAACETIYAALSKAGKDVLFDDRDDRAGTKFATADLIGVPVQIIVGPRSIAGGEVEVKD 455

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG RE M++E  IN  +
Sbjct: 456 RKTGARETMTVEAAINKLA 474


>gi|222148295|ref|YP_002549252.1| prolyl-tRNA synthetase [Agrobacterium vitis S4]
 gi|221735283|gb|ACM36246.1| prolyl-tRNA synthetase [Agrobacterium vitis S4]
          Length = 498

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 281/439 (64%), Positives = 356/439 (81%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLRTGMI Q S+GIYSWLPLG++ LD VNAIIR+E
Sbjct: 59  MRLSRYFLPILKENPKEAEIVSHRLMLRTGMIRQQSQGIYSWLPLGKRVLDKVNAIIRQE 118

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PTLQSA+LW ESGRYD YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 119 QNRAGAVELLMPTLQSAELWQESGRYDDYGKEMLRIKDRQDRPMLYGPTNEEMITDIFRS 178

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQLKFRDE+RPRFG MRSREFLMKDAYSFDLT E + HSYNKMF +
Sbjct: 179 YVKSYKSLPLNLYHIQLKFRDEIRPRFGTMRSREFLMKDAYSFDLTKESAIHSYNKMFAA 238

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+ SHEFI+LADTGE++VFC K F+D  IPS +TDFD
Sbjct: 239 YLRTFDRLGLRAIPMRADTGPIGGNHSHEFIILADTGESEVFCHKSFLDRAIPSADTDFD 298

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L +I + WT+ YAATS++H+E  + ++P++ ++SARGIEVGHIFYFGTKYS PM A
Sbjct: 299 DVAGLQAIFDDWTSHYAATSEMHDEAAYGAMPDDAKISARGIEVGHIFYFGTKYSEPMGA 358

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF   +IN+KA D  
Sbjct: 359 KVQGPDGKEHLVHMGSYGIGPTRLVPAIIEASHDENGIIWPASVAPFDAIIINMKAGDAG 418

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC+ +Y  L+K G DV  DD  ++ G++FA+ADL+G P QVIVG + V++ +VE+K+
Sbjct: 419 CDGACDTVYGALTKAGKDVLLDDTDDRAGAKFALADLIGVPYQVIVGPRSVANGEVELKN 478

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG RE M++E  IN  +
Sbjct: 479 RKTGERETMTIEAAINRLA 497


>gi|15965039|ref|NP_385392.1| prolyl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|307301111|ref|ZP_07580880.1| prolyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
 gi|307317844|ref|ZP_07597282.1| prolyl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|81854328|sp|Q92QN2|SYP_RHIME RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|15074218|emb|CAC45865.1| Probable prolyl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|306896606|gb|EFN27354.1| prolyl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|306904066|gb|EFN34652.1| prolyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
          Length = 442

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 278/438 (63%), Positives = 354/438 (80%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+PIL+ENP++AEI SH+LMLRTGM+ Q S GIY+WLPLG++ LD VNAIIREE
Sbjct: 1   MRLSRFFMPILKENPKEAEIVSHRLMLRTGMVRQQSAGIYTWLPLGKRVLDKVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GAIE+ +PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRSGAIELLMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYRNLP   Y IQLKFRDE+RPRFG MRSREFLMKDAYSFDL   G++H+YNKMF +
Sbjct: 121 YVKSYRNLPLNLYHIQLKFRDEIRPRFGTMRSREFLMKDAYSFDLDRAGAEHAYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+ F IP E+T+FD
Sbjct: 181 YLRTFDRMGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFLGFDIPGEDTNFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L +I ++WT+ YAATS++H+E  F ++ E +R+SARGIEVGHIFYFGTKYS  M A
Sbjct: 241 DVAGLKTIFDKWTSRYAATSEMHDEAAFGAIAEGERLSARGIEVGHIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP  +APF + +IN+K  D+ 
Sbjct: 301 KVLGPDGKEHTVHMGSYGIGPTRLVPAIIEASHDDNGIIWPKGIAPFDVVVINMKTGDEA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC K+Y+ L K G DV  DD  E+ G +FA ADL+G P+QVIVG + +++ +VE+K 
Sbjct: 361 CDAACGKVYSDLGKAGFDVLLDDTDERAGGKFATADLIGVPVQVIVGPRSIANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 421 RKTGARETMTVEAAINKL 438


>gi|150396141|ref|YP_001326608.1| prolyl-tRNA synthetase [Sinorhizobium medicae WSM419]
 gi|166980159|sp|A6U7Z3|SYP_SINMW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150027656|gb|ABR59773.1| prolyl-tRNA synthetase [Sinorhizobium medicae WSM419]
          Length = 442

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 280/438 (63%), Positives = 355/438 (81%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+PIL+ENP++AEI SH+LMLRTGMI Q S GIY+WLPLG++ LD VNA+IREE
Sbjct: 1   MRLSRFFMPILKENPKEAEIVSHRLMLRTGMIRQQSAGIYTWLPLGKRVLDKVNAVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GAIE+ +PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRSGAIELLMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYRNLP   Y IQLKFRDE+RPRFG MRSREFLMKDAYSFDL   G++H+Y +MF +
Sbjct: 121 YVKSYRNLPLNLYHIQLKFRDEIRPRFGTMRSREFLMKDAYSFDLDRAGAEHAYKRMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+ F IP E+T+FD
Sbjct: 181 YLRTFDRLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFLGFDIPGEDTNFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ S+N+I E+WT+ YAATS++H E  FD++PE +R+SARGIEVGHIFYFGTKYS  M A
Sbjct: 241 DVASMNAIFEKWTSRYAATSEMHEEAAFDAIPEGERLSARGIEVGHIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP  +APF I +IN+K  D  
Sbjct: 301 KVLGPDGKEHTVHMGSYGIGPTRLVPAIIEASHDDNGIIWPKGIAPFDIVVINMKTGDDA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC ++Y+ L K G DV  DD  E+ G +FA AD++G P+QVIVG + +++ +VE+K 
Sbjct: 361 CDTACGRLYSDLGKAGFDVLLDDTDERAGGKFATADIIGVPVQVIVGPRSIANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 421 RKTGARETMTVEAAINKL 438


>gi|153009733|ref|YP_001370948.1| prolyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
 gi|166980136|sp|A6X1L5|SYP_OCHA4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|151561621|gb|ABS15119.1| prolyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
          Length = 442

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 264/441 (59%), Positives = 337/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQERDMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QVFC K ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVFCDKAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVNRWTTPYAATDEMHDEADWSKVKPEDQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+ HD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEAFHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EKIY  L+  G D   DD  ++ G++FA  DL+G P QVIVG + V+  +VEIK 
Sbjct: 361 CDAVSEKIYEALTNAGVDPLLDDTDDRPGAKFATMDLIGLPTQVIVGPRGVAAGEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ +S+E  IN  +  
Sbjct: 421 RKTGERQSLSVEAAINLLTAE 441


>gi|295689605|ref|YP_003593298.1| prolyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
 gi|295431508|gb|ADG10680.1| prolyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
          Length = 443

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 253/440 (57%), Positives = 329/440 (74%), Gaps = 1/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L+ +  I+REE
Sbjct: 1   MRLSRYFLPVLKEAPSDAQIVSHQLMLRAGMIRQEAAGIYAWLPLGLRVLNKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +PT+Q ADLW ESGRYD YG EMLR+ DR+ + +++GPT EEV+TDIFR+
Sbjct: 61  MDRAGAIELLMPTIQLADLWRESGRYDDYGDEMLRITDRHKRELLFGPTAEEVVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY++LP   Y IQ KFRDE RPRFGVMR REF MKDAYSFDL  +G++ SYN+MFV+
Sbjct: 121 SIKSYKDLPKNLYNIQWKFRDERRPRFGVMRGREFFMKDAYSFDLDADGARKSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL +F R+GLK++PMRA++GPIGGDLSHEFIVLA+TGE+ VFC KD ++ P P  + D+ 
Sbjct: 181 YLNLFARMGLKAVPMRADTGPIGGDLSHEFIVLAETGESAVFCHKDLVEMPAPGPDLDWI 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV Q TA YAAT ++H+E  F++LPE  R+SARGIEVGHIF FGTKYS PM A
Sbjct: 241 N-GDLQPIVNQRTALYAATEEMHDEAAFNALPEGDRLSARGIEVGHIFSFGTKYSEPMKA 299

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DG+   VQMGSYG+G  R++ A+IE+SHD  GIIWP+SVAPF + ++N++  D  
Sbjct: 300 TVQGPDGQQVPVQMGSYGVGVSRLLGAIIEASHDEGGIIWPESVAPFDVGIVNMRQGDAA 359

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE  Y  L   G DV +DD   + G++FA  DL+G P Q+IVG K +++  VEIK+
Sbjct: 360 CDAACETAYNALKAAGRDVLYDDTDARGGAKFATMDLIGLPWQLIVGPKGIAEGVVEIKN 419

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG R   SL+ V++  + 
Sbjct: 420 RKTGERHTASLDSVLDGLTK 439


>gi|239831704|ref|ZP_04680033.1| prolyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
 gi|239823971|gb|EEQ95539.1| prolyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
          Length = 446

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 262/441 (59%), Positives = 339/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIY+WLP+G K L+ V  IIREE
Sbjct: 5   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYAWLPIGLKVLNKVCDIIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 65  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQERDMLFGPTNEEMVTDIFRS 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 125 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QVFC K ++D  +P  +TDF 
Sbjct: 185 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVFCDKAYLDLAVPGADTDFR 244

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV++WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 245 NDAQLTDIVQRWTTPYAATDEMHDEADWAKVKPEDQVSARGIEVGHIFHFGTKYSEPMGA 304

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+ HD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 305 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEAFHDDAGIIWPKAIAPFGAGIVNMKPGDEG 364

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  ++ G++FA  DL+G P QVIVG + V+  +VEIK 
Sbjct: 365 CDAVSEKLYEALTNAGVDPLLDDTDDRPGAKFATMDLIGLPTQVIVGPRGVAAGEVEIKD 424

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+++S+E  IN  +  
Sbjct: 425 RKTGERQNLSVEAAINLLTAE 445


>gi|325292651|ref|YP_004278515.1| Prolyl-tRNA synthetase [Agrobacterium sp. H13-3]
 gi|325060504|gb|ADY64195.1| Prolyl-tRNA synthetase [Agrobacterium sp. H13-3]
          Length = 477

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 279/438 (63%), Positives = 357/438 (81%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S GIYSWLPLG++ LD VN IIREE
Sbjct: 38  MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPLGKRVLDKVNRIIREE 97

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R+GAIE+ +PTLQ+A+LW ESGRYD YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 98  QDRSGAIELLMPTLQTAELWQESGRYDDYGKEMLRIKDRQDRQMLYGPTNEEMITDIFRS 157

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+NLP   Y IQLKFRDE+RPRFG MRSREFLMKDAYSFDLT E + HSYNKMFV+
Sbjct: 158 YVKSYKNLPLNLYHIQLKFRDEVRPRFGTMRSREFLMKDAYSFDLTKEDAIHSYNKMFVA 217

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+ SHEFI+LADTGE++VFC K F+D  IP+++T+FD
Sbjct: 218 YLRTFERLGLRAIPMRADTGPIGGNHSHEFIILADTGESEVFCHKSFLDRAIPADDTNFD 277

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +L  + ++WTA YAATS++H+E  +D++P+ +R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 278 DVAALQGVFDEWTADYAATSEMHDEAAYDAIPDGQRLSARGIEVGHIFYFGTKYSEPMGA 337

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +GADGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF + +IN+KA D  
Sbjct: 338 KVQGADGKEHPVHMGSYGIGPTRLVPAIIEASHDENGIIWPASVAPFDVVIINMKAGDAA 397

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACEK+Y  LS  G DV +DD  ++ G +FA ADL+G P+Q+IVG +  ++ +VE+K 
Sbjct: 398 CDAACEKLYYSLSNAGKDVLYDDTDDRAGQKFATADLIGVPMQIIVGPRSAANGEVEVKD 457

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE +++E  +N  
Sbjct: 458 RKTGDRETVTIEAAMNRV 475


>gi|298291828|ref|YP_003693767.1| prolyl-tRNA synthetase [Starkeya novella DSM 506]
 gi|296928339|gb|ADH89148.1| prolyl-tRNA synthetase [Starkeya novella DSM 506]
          Length = 440

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 255/439 (58%), Positives = 336/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q S GIY+WLPLG++ LD +  ++REE
Sbjct: 1   MRLSRYFLPILREVPKEAEIVSHRLMLRAGMIRQESAGIYAWLPLGKRVLDKICNVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GAIE+ +PT+QSADLW ESGRYD YGKEMLR+ DR+++ M++GPT+EE++T+I R+
Sbjct: 61  QNRSGAIEILMPTIQSADLWRESGRYDDYGKEMLRIKDRHERDMLFGPTNEEMLTEIVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYS DL  E +  +YN+MFV+
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSVDLDFESAVVAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGLK+IPM A++GPIGG+ SHEFI+LA TGE+QVFC  D++    P  + DF 
Sbjct: 181 YLRTFERLGLKAIPMVADTGPIGGNHSHEFIILASTGESQVFCHSDYLGMDTPGSDVDFQ 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +L +IV +WT+ YAAT + H+E  F+++PE +R+SARGIEVGHIFYFGTKYS PM+A
Sbjct: 241 DPAALQTIVNRWTSLYAATEEKHDEAAFEAIPEGQRLSARGIEVGHIFYFGTKYSEPMNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG +  V MGSYGIG  R+ AA+IE+SHD  GIIWP+++APF++ L+N+K  D  
Sbjct: 301 TVAGPDGVERPVHMGSYGIGPSRLAAAIIEASHDENGIIWPEAIAPFRVGLLNLKVGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE IYA L+    DV +DD  E+ GS+FA ADL+G P Q+IVG K +++  VE+K 
Sbjct: 361 TDAACEAIYAELASRNIDVLYDDTDERPGSKFATADLIGLPWQIIVGPKGLANGMVELKR 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R  G RE + +   +   +
Sbjct: 421 RADGTRETLPVAAALARIT 439


>gi|190891305|ref|YP_001977847.1| prolyl-tRNA synthetase [Rhizobium etli CIAT 652]
 gi|226701323|sp|B3PW17|SYP_RHIE6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|190696584|gb|ACE90669.1| prolyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
          Length = 440

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 287/438 (65%), Positives = 363/438 (82%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIREE
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR ++ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQERPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+DF IP E+TDFD
Sbjct: 181 YLRTFDRLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFVDFDIPGESTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I ++WT+ YAATS++H+E  F+++PE +R+SARGIE GHIFYFGTKYS PM A
Sbjct: 241 SVEGLQAIFDKWTSLYAATSEMHDEAAFNAVPEGERLSARGIEAGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF + +IN+KA DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDVVVINMKAGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA L+K G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 421 RKTGARETMTIEAAINRF 438


>gi|159184694|ref|NP_354297.2| prolyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
 gi|81848693|sp|Q8UFV9|SYP_AGRT5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|159139984|gb|AAK87082.2| prolyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
          Length = 440

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 283/437 (64%), Positives = 357/437 (81%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR GMI Q S GIYSWLPLG++ LD VN IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPLGKRVLDKVNKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ+A+LW ESGRYD YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELLMPTLQTAELWQESGRYDDYGKEMLRIKDRQDRQMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+NLP   Y IQLKFRDE+RPRFG MRSREFLMKDAYSFDLT E + HSYNKMFV+
Sbjct: 121 YVKSYKNLPLNLYHIQLKFRDEVRPRFGTMRSREFLMKDAYSFDLTKEDAIHSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+ SHEFI+LADTGE++VFC K F+D  IP+E+TDFD
Sbjct: 181 YLRTFERLGLRAIPMRADTGPIGGNHSHEFIILADTGESEVFCHKSFLDRAIPAESTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +L  + ++WTA YAATS++H++  +D++PE +R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAALQGVFDEWTADYAATSEMHDDAAYDAIPEGERLSARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF + +IN+KA D  
Sbjct: 301 KVQGKDGKEHPVHMGSYGIGPTRLVPAIIEASHDENGIIWPASVAPFDVVIINMKAGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACEK+Y +LS  G DV +DD  ++ G +FA ADL+G P+Q+IVG + V++ +VE+K 
Sbjct: 361 CDAACEKLYYQLSNAGKDVLYDDTDDRAGQKFATADLIGVPVQIIVGPRSVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINY 437
           R TG RE +++E  +N 
Sbjct: 421 RKTGERETVTIEAAMNK 437


>gi|327194827|gb|EGE61661.1| prolyl-tRNA synthetase protein [Rhizobium etli CNPAF512]
          Length = 440

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 288/438 (65%), Positives = 364/438 (83%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIREE
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR ++ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRINDRQERPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+DF IP E+TDFD
Sbjct: 181 YLRTFDRLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFVDFDIPGESTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I ++WT+ YAATS++H+E  F+++PE +R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 SVEGLQAIFDKWTSLYAATSEMHDEAAFNAVPEGERLSARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF + +IN+KA DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDVVVINMKAGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA L+K G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 421 RKTGARETMTIEAAINRF 438


>gi|162329642|ref|YP_469149.2| prolyl-tRNA synthetase [Rhizobium etli CFN 42]
 gi|114152238|sp|Q2K9R4|SYP_RHIEC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 440

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 288/438 (65%), Positives = 360/438 (82%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIREE
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+ F IP ENTDFD
Sbjct: 181 YLRTFERLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFVGFDIPGENTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I ++WT+ YAATS++H+E  F+++PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 SVEGLKAIFDKWTSLYAATSEMHDEAAFNAVPEGDRLSARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF + +IN+K  DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDVVVINMKVGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA L K G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALKKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 421 RKTGARETMTIEAAINRF 438


>gi|170742529|ref|YP_001771184.1| prolyl-tRNA synthetase [Methylobacterium sp. 4-46]
 gi|226701312|sp|B0ULM2|SYP_METS4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|168196803|gb|ACA18750.1| prolyl-tRNA synthetase [Methylobacterium sp. 4-46]
          Length = 444

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 257/439 (58%), Positives = 343/439 (78%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  +IR E
Sbjct: 1   MRLSRYFLPILRETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLNRVVEVIRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R+GAIE+ +PT+QSA+LW ESGRY++YGKEMLR+ DR+++ M++GPT+EE++T IFRS
Sbjct: 61  QDRSGAIELLMPTIQSAELWRESGRYEAYGKEMLRIRDRHEREMLFGPTNEEMITAIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LP + Y IQ KFRDE+RPRFG MRSREFLMKDAYSFDL   G++H+YNKMFV+
Sbjct: 121 AVRSYKDLPKSLYHIQWKFRDEVRPRFGTMRSREFLMKDAYSFDLDEAGARHAYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGLK+IPMRAE+GPIGG+LSHEFI+LA TGE++V+C + ++DFPIP  +TDFD
Sbjct: 181 YLRTFARLGLKAIPMRAETGPIGGNLSHEFIILAQTGESEVYCDRAYLDFPIPPGSTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +L + V+ WT+ YAATS++H  + F ++PE  R++ARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAALQATVDHWTSRYAATSEMHEPERFAAVPEEARMAARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG++  V MGSYGIG  R+VAA+IE+SHD  GI+WPD+VAPF + L+N+K  D  
Sbjct: 301 RVTGPDGQERPVHMGSYGIGPSRLVAAIIEASHDEAGIVWPDAVAPFDVGLLNLKTGDIA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC +I  +L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ +VE+K 
Sbjct: 361 TDAACARIQEQLEAAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGQVELKR 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG RE ++ + +     
Sbjct: 421 RATGERETVAPDALAARLR 439


>gi|254418115|ref|ZP_05031839.1| prolyl-tRNA synthetase [Brevundimonas sp. BAL3]
 gi|196184292|gb|EDX79268.1| prolyl-tRNA synthetase [Brevundimonas sp. BAL3]
          Length = 438

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 247/440 (56%), Positives = 328/440 (74%), Gaps = 4/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLP L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPTLKEAPSDAQIVSHQLMLRAGMIKQEAAGIYAWLPLGLRVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+++ ++YGPT+EE++TDIFR+
Sbjct: 61  QQRAGAVELLMPTLQLADLWRESGRYDAYGPEMLRITDRHERELLYGPTNEEMITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   + IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MFV+
Sbjct: 121 YVKSYKSLPLNLFHIQWKFRDERRPRFGVMRGREFLMKDAYSFDVDEASARKAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F R+GLK++PMRA++GPIGGDLSHEFIVLA+TGE+ VFC K  ++ P P  + D+D
Sbjct: 181 YLNTFARMGLKAVPMRADTGPIGGDLSHEFIVLAETGESAVFCDKALVEMPAPGADVDWD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D+ S+   V+Q TA YAAT ++H+E  F++   E  R+SARGIEVGHIFYFG KYS PM 
Sbjct: 241 DLQSI---VDQRTALYAATEEMHDEARFEAETAEGDRLSARGIEVGHIFYFGEKYSAPMK 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG+D  V MGSYG+G  R++ A+IE+SHD  GIIWPD+VAPF + +IN++A+D 
Sbjct: 298 AKVAGPDGQDAEVHMGSYGVGVSRLLGAIIEASHDEGGIIWPDAVAPFDVVVINLRANDA 357

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE   A+L K+G DV +DD  E+ G +FA ADL+G P Q+ +G K ++D  VE+K
Sbjct: 358 AVSAACEDAVAQLEKLGKDVLYDDTDERPGGKFATADLIGVPWQLTIGPKGLADGVVELK 417

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R TG +  + L E I   +
Sbjct: 418 RRATGEKVSVPLAEAIERLT 437


>gi|116251485|ref|YP_767323.1| prolyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841]
 gi|114152239|sp|Q1MIJ6|SYP_RHIL3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|115256133|emb|CAK07214.1| putative prolyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 440

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 287/438 (65%), Positives = 361/438 (82%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIR+E
Sbjct: 1   MRLSRFFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT E ++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREAAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG LSHEFI+LADTGE++VFC KDF+DF +P E+TDFD
Sbjct: 181 YLRTFDRLGLRAIPMRADTGPIGGKLSHEFIILADTGESEVFCHKDFVDFDVPGEHTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I ++WT+ YAATS++H+E  F+++PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 SVEGLQAIFDKWTSLYAATSEMHDEAAFNAVPEGDRLSARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF I +IN+KA DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDIVVINMKAGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA LSK G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALSKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 421 RKTGARETMTIEAAINRF 438


>gi|114707388|ref|ZP_01440285.1| prolyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
 gi|114537269|gb|EAU40396.1| prolyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
          Length = 440

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 261/439 (59%), Positives = 336/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E PR+AEI SH+LMLR GMI Q + G+Y++LPLG K L+ V AIIREE
Sbjct: 1   MRLSRYFLPILKETPREAEIVSHQLMLRAGMIRQQAAGLYTFLPLGLKVLNKVCAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YG+EMLR+ DR+ + ++YGPT+EE++TDIFRS
Sbjct: 61  QNRAGANELLMPTIQSADLWRESGRYDAYGEEMLRITDRHKRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SYR+LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E ++ +Y++MFVS
Sbjct: 121 YVRSYRSLPLNLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDFESAQTAYHRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R GL++IPMRA++GPIGG+LSHEFI+LA TGE++VFC +D++   IPSE  DFD
Sbjct: 181 YLRTFDRCGLQAIPMRADTGPIGGNLSHEFIILASTGESEVFCHRDYLGMEIPSEAIDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L SIVE+WT PYAAT ++H+E  ++++P N +++ARGIEVGHIFYFGTKYS  M+A
Sbjct: 241 DAGQLASIVEKWTTPYAATDEMHDETAWNTVPANHQLNARGIEVGHIFYFGTKYSAAMNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKD  V MGSYGIG  R+VAA IE+ HD  GIIWP S+APF + LIN+K  D  
Sbjct: 301 AVTGPDGKDVPVHMGSYGIGPSRLVAAAIEAFHDEAGIIWPRSIAPFDVGLINMKPGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACEKIY  + + G DV +DD   + G +FA  DL+G P QVI+G +     + E+K 
Sbjct: 361 CDAACEKIYEEMKQAGIDVLYDDQEGRAGGKFATMDLIGLPTQVIIGPRGAKSGEAEVKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R +G RE + +++VI    
Sbjct: 421 RASGARETIPMDQVIAKVK 439


>gi|114569925|ref|YP_756605.1| prolyl-tRNA synthetase [Maricaulis maris MCS10]
 gi|122316107|sp|Q0APX0|SYP_MARMM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114340387|gb|ABI65667.1| prolyl-tRNA synthetase [Maricaulis maris MCS10]
          Length = 444

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 244/440 (55%), Positives = 326/440 (74%), Gaps = 2/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P DAEI SH+LMLR GMI Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRYFLPVLKETPSDAEIVSHQLMLRAGMIKQEAAGIYAWLPLGHRVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA+E+ +PT+QSADLW ESGRYD YG EMLR+ DR+D+ M++GPT+EE++TDIFRS
Sbjct: 61  QDRAGAVELLMPTIQSADLWRESGRYDDYGDEMLRITDRHDRDMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + KSY+++P   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ SYN+MFV+
Sbjct: 121 YCKSYKDVPKLLYHIQWKFRDERRPRFGVMRGREFLMKDAYSFDVDEAAARRSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F RLGLK++PM+A++GPIGGDLSHEFIVLA+TGE++VFC  D ++   P  + DFD
Sbjct: 181 YLNTFARLGLKAVPMQADTGPIGGDLSHEFIVLAETGESEVFCHADLVEMGAPGLDVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L  +V+Q TA YAAT ++H  + F ++P ++++SARGIEVGHIF FGTKYS PM A
Sbjct: 241 --GDLQPLVDQRTALYAATEEMHQPEEFAAVPADRQLSARGIEVGHIFNFGTKYSEPMKA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +  DG+   V MGSYG+G  R++ A+IE+ HD KG IWP+SVAPF   +IN++  D+ 
Sbjct: 299 TVQHQDGQPRPVHMGSYGVGVSRLLGAIIEAHHDEKGCIWPESVAPFGAGIINMRVGDEA 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE  Y  L K G D  +DD   + G++FA ADL+G P Q++VG + + + K+E+K 
Sbjct: 359 CDAACETAYQGLVKAGLDPLYDDTDSRAGAKFATADLIGLPYQLVVGPRGLKEGKIELKV 418

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG   +MS E+ ++  + 
Sbjct: 419 RRTGETHEMSPEDAVSRLAE 438


>gi|158423310|ref|YP_001524602.1| prolyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
 gi|172047938|sp|A8I438|SYP_AZOC5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|158330199|dbj|BAF87684.1| prolyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
          Length = 440

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 255/439 (58%), Positives = 335/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++A+I SH+LMLR GMI Q S GIY+WLPLG + L+ +  IIREE
Sbjct: 1   MRLSRYFLPILREVPKEADIVSHRLMLRAGMIRQESAGIYAWLPLGLRVLNKICNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNRTGA+E+ +PT+QSADLW ESGRYD YGKEMLR+ DR+++ M++GPT+EE++T+I R 
Sbjct: 61  QNRTGAVELLMPTIQSADLWRESGRYDDYGKEMLRIKDRHERDMLFGPTNEEMITEIVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY++LP   Y IQ KFRDE+RPRFGV RSREFLMKDAYSFDL  EG+KHSYNKMFV+
Sbjct: 121 SIKSYKSLPLNLYHIQWKFRDEVRPRFGVYRSREFLMKDAYSFDLDAEGAKHSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPM A++GPIGG+LSHEFI+LA TGE++VFC  D+++   P  + +FD
Sbjct: 181 YLRTFARMGLKAIPMVADTGPIGGNLSHEFIILASTGESEVFCHGDYLEMAPPPADVNFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  ++  +V  WT  YAAT + H+   F ++P  ++++ARGIEVGHIFYFGTKYS P +A
Sbjct: 241 DAAAIQQVVNDWTTLYAATEEKHDAATFAAIPAERQMAARGIEVGHIFYFGTKYSAPFNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG +H + MGSYGIG  R+VAA+IE+SHD  GIIWPD+VAPF++ ++N+K  D  
Sbjct: 301 KVLGPDGAEHLIHMGSYGIGPSRLVAAMIEASHDDAGIIWPDAVAPFQVGILNLKVGDSA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC  +YA+L+  G DV +DD  E+ GS+FA ADL+G P Q++VG K ++D KVE+K 
Sbjct: 361 VDAACADLYAKLTAAGVDVLYDDTDERAGSKFATADLIGLPWQILVGPKSLADGKVELKR 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R+ G RE ++  E      
Sbjct: 421 RVDGSRELVTPAEAFERLK 439


>gi|241204106|ref|YP_002975202.1| prolyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857996|gb|ACS55663.1| prolyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 440

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 288/438 (65%), Positives = 361/438 (82%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIR+E
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG LSHEFI+LADTGE++VFC KDF+DF IP  +TDFD
Sbjct: 181 YLRTFDRLGLRAIPMRADTGPIGGKLSHEFIILADTGESEVFCHKDFVDFDIPGAHTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I ++WT+ YAATS++H+E  F+++PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 SVEGLQAIFDKWTSLYAATSEMHDEAAFNAVPEGDRLSARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF I +IN+KA DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDIVVINMKAGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA L+K G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 421 RKTGARETMTIEAAINRF 438


>gi|288958966|ref|YP_003449307.1| prolyl-tRNA synthetase [Azospirillum sp. B510]
 gi|288911274|dbj|BAI72763.1| prolyl-tRNA synthetase [Azospirillum sp. B510]
          Length = 437

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 240/438 (54%), Positives = 317/438 (72%), Gaps = 3/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S +F+P L+E P +A+I SH+LMLR GMI Q S GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSSFFMPTLKETPTEAQIVSHRLMLRAGMIRQTSAGIYAWLPLGYRVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PT+QSADLW ESGRYD YGKEMLR+ DR+D+ M++GPT+EE++TDIFRS
Sbjct: 61  QDAAGAQELLMPTIQSADLWRESGRYDDYGKEMLRITDRHDREMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+ P G++ SY KMF++
Sbjct: 121 FVKSYRQLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDIDPAGARRSYQKMFLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGGDLSHEFI+LA+TGE+ VFC KD+M   +  +    +
Sbjct: 181 YLRTFARIGLKAIPMRADTGPIGGDLSHEFIILAETGESGVFCHKDWMTLDVLKDAPGME 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L    ++ T  YAAT + H+      +P+   VSARGIEVGHIF FGTKYS PM+A
Sbjct: 241 D--DLQPFFDRVTGIYAATDEKHDPA-NSPVPDADLVSARGIEVGHIFNFGTKYSKPMNA 297

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G +G+   V+MGSYGIG  R++ A+IE+SHD  GIIWPD+VAPF + LIN+K+ D  
Sbjct: 298 VVAGPNGESIPVEMGSYGIGVSRLMGAIIEASHDDNGIIWPDAVAPFNVGLINLKSGDAE 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C ++YA+L   G +V +DD  E+ G++FA  DL+G P Q++VG + +    VE+K 
Sbjct: 358 TDRVCAELYAKLEAAGLEVAYDDRDERPGAKFADMDLIGVPWQLVVGPRGLKSGVVELKR 417

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG +E++ +E  +   
Sbjct: 418 RATGEKEELPVEAALAKL 435


>gi|209548882|ref|YP_002280799.1| prolyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|226701324|sp|B5ZYN2|SYP_RHILW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|209534638|gb|ACI54573.1| prolyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 440

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 286/438 (65%), Positives = 359/438 (81%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIR+E
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+ F IP + TDFD
Sbjct: 181 YLRTFDRLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFVGFDIPDDRTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I ++WT+ YAATS++H+E  F+++PE  R+SARGIEVGHIFYFGTKYS  M A
Sbjct: 241 SVDGLKAIFDKWTSLYAATSEMHDEAAFNAVPEGDRLSARGIEVGHIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF I +IN+KA DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDIVVINMKAGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA L+K G DV +DD  ++ G++FA ADL+G P Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPFQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 421 RKTGARETMTIEAAINRF 438


>gi|118590019|ref|ZP_01547423.1| prolyl-tRNA synthetase [Stappia aggregata IAM 12614]
 gi|118437516|gb|EAV44153.1| prolyl-tRNA synthetase [Stappia aggregata IAM 12614]
          Length = 442

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 250/444 (56%), Positives = 335/444 (75%), Gaps = 2/444 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPILKETPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPLGLKVLRKIERIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GAI++ +PT+QSADLW ESGRYD+YGKEMLR+ DR+++ M++GPT+EE++TDIFR 
Sbjct: 61  QARAGAIQLLMPTIQSADLWRESGRYDAYGKEMLRITDRHERDMLFGPTNEEMITDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E ++H+YN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDKESARHAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPM+A++GPIGGD+SHEFI+LA+TGE++VFC K  ++ P P+E+TDF 
Sbjct: 181 YLRTFARMGLKAIPMKADTGPIGGDMSHEFIILAETGESEVFCDKSLLELPTPAEDTDF- 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L  IV +WT PYAAT ++H+E  F +LPE+ RVSARGIEVGHIFYFGTKYS  M A
Sbjct: 240 -FSDLTPIVTEWTTPYAATDEMHDEAAFGALPEDTRVSARGIEVGHIFYFGTKYSDAMGA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               A+G +  V MGSYG+G  R++ A+IE++HD  GI+WP SVAPF + L+N+K  D++
Sbjct: 299 KVATAEGTEVPVHMGSYGVGVSRLLGALIEANHDENGIVWPKSVAPFHVGLVNLKPGDEL 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               CE +YA+    G +V +DD   + G++FA  DL+G P QV+ G + + D  +E+K 
Sbjct: 359 TDPVCEDLYAKFEAAGIEVLYDDTDTRAGAKFATMDLIGLPFQVVAGPRGLKDGLLEVKD 418

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R TG +E +S E  +N  +   ++
Sbjct: 419 RATGEKEMLSPEATLNKLTAALTD 442


>gi|154248383|ref|YP_001419341.1| prolyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
 gi|226701431|sp|A7INT8|SYP_XANP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|154162468|gb|ABS69684.1| prolyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
          Length = 440

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 262/439 (59%), Positives = 342/439 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q S GIY+WLP G + L+ V  IIREE
Sbjct: 1   MRLSRYFLPILREVPKEAEIVSHRLMLRAGMIRQESAGIYAWLPFGLRVLNKVCNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GAIEM +PT+QSADLW ESGRYD YGKEMLR+ DR+++ M++GPT+EE++T+I R+
Sbjct: 61  QNRSGAIEMLMPTIQSADLWRESGRYDDYGKEMLRIKDRHEREMLFGPTNEEMITEIVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   Y IQ KFRDE+RPRFGV RSREFLMKDAYSFDL   G++HSYNKMFV+
Sbjct: 121 YVKSYKALPLNLYHIQWKFRDEVRPRFGVYRSREFLMKDAYSFDLDAAGARHSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPM A++GPIGG+LSHEFI+LA TGE++VFC  D+++   PS + +FD
Sbjct: 181 YLRTFARMGLKAIPMVADTGPIGGNLSHEFIILASTGESEVFCHGDYLEMAPPSADVNFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L S+ ++WT  YAATS+ H+E  F ++PE  R++ARGIEVGHIFYFGTKYS P  A
Sbjct: 241 DAAGLQSVFDRWTELYAATSEKHDEAAFAAIPEASRMAARGIEVGHIFYFGTKYSEPFGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              GADG +H + MGSYGIG  R+VAA+IE+SHD  GIIWPD+VAPF++ ++N+KA D  
Sbjct: 301 KVLGADGAEHTIHMGSYGIGPSRLVAAMIEASHDDNGIIWPDAVAPFQVGILNLKAGDST 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACEK+YA L+  G DV +DD  E+ G++FA ADL+G P Q++VG K ++D KVE+K 
Sbjct: 361 TGAACEKLYAELTAAGYDVLYDDTEERAGAKFATADLIGLPWQILVGPKGLADGKVELKR 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R+ G RE ++  +++    
Sbjct: 421 RVDGSRELIAPGDILERLK 439


>gi|218463078|ref|ZP_03503169.1| prolyl-tRNA synthetase [Rhizobium etli Kim 5]
          Length = 440

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 288/438 (65%), Positives = 361/438 (82%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIR+E
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +
Sbjct: 121 SVKSYKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+ F IP E TDFD
Sbjct: 181 YLRTFERLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFVGFDIPDERTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L +I E+WT+ YAATS++H+E  F+++PE+ R+SARGIEVGHIFYFGTKYS  M A
Sbjct: 241 SVEGLQAIFEKWTSLYAATSEMHDEAAFNAVPESDRLSARGIEVGHIFYFGTKYSETMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF I +IN+KA DQ 
Sbjct: 301 KVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDIVVINMKAGDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C D CE IYA L+K G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+K 
Sbjct: 361 CDDTCELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE M++E  IN  
Sbjct: 421 RKTGARETMTIEAAINRF 438


>gi|218529196|ref|YP_002420012.1| prolyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
 gi|254782907|sp|B7KPK1|SYP_METC4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218521499|gb|ACK82084.1| prolyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
          Length = 441

 Score =  418 bits (1074), Expect = e-115,   Method: Composition-based stats.
 Identities = 255/441 (57%), Positives = 334/441 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  ++R E
Sbjct: 1   MRLSRYFLPILRETPKEAEIISHRLMLRAGMIRQEAAGIYAWLPLGLRVLNKVCDVVRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PT+Q+ADLW ESGRY++YGKEMLRL DR+++ ++YGPT EEV+T+IFR+
Sbjct: 61  QDRAGAIEILMPTIQAADLWRESGRYEAYGKEMLRLKDRHERELLYGPTAEEVVTEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SY++LP   YQI  KFRDE+RPRFG MRSREFLMKD YSFD+    ++HSYNK+FVS
Sbjct: 121 STRSYKDLPKNLYQISWKFRDEVRPRFGTMRSREFLMKDGYSFDIDQAAARHSYNKVFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGGDLSHEFI+LA TGE++VFC + ++D P+P  + DFD
Sbjct: 181 YLRTFERLGLRAIPMRADTGPIGGDLSHEFIILAKTGESEVFCDQAYLDMPVPPPSVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L  +V+ WT+ YAAT ++H+E +F  +PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAGLQGVVDAWTSHYAATDEMHDEAVFAEVPEASRLSARGIEVGHIFYFGTKYSTPMKA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG +  V MGSYGIG  R+VAA IE+SHD  GIIWPD++APF ++LIN+K  D  
Sbjct: 301 VVTGPDGSERPVHMGSYGIGPSRLVAATIEASHDEAGIIWPDAIAPFDVALINLKVGDGA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC +I A L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ K+E+K 
Sbjct: 361 CDTACAEIQAALETAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGKIELKR 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R +G RE +   ++       
Sbjct: 421 RASGERETLDPVDLPARIRRL 441


>gi|16126174|ref|NP_420738.1| prolyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|221234945|ref|YP_002517381.1| prolyl-tRNA synthetase [Caulobacter crescentus NA1000]
 gi|81856261|sp|Q9A6Z5|SYP_CAUCR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782893|sp|B8GWT1|SYP_CAUCN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|13423386|gb|AAK23906.1| prolyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|220964117|gb|ACL95473.1| prolyl-tRNA synthetase [Caulobacter crescentus NA1000]
          Length = 443

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 254/440 (57%), Positives = 330/440 (75%), Gaps = 1/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L+ +  I+REE
Sbjct: 1   MRSSRYFLPVLKEAPSDAQIVSHQLMLRAGMIRQEAAGIYAWLPLGLRVLNKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +PT+Q ADLW ESGRYD YG EMLR+ DR+ + +++GPT EEV+TDIFR+
Sbjct: 61  MDRAGAIELLMPTIQLADLWRESGRYDDYGDEMLRITDRHKRELLFGPTAEEVVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL  +G++ SYN+MFV+
Sbjct: 121 SIKSYKDLPKNLYNIQWKFRDERRPRFGVMRGREFLMKDAYSFDLDADGARKSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL +F R+GLK++PMRA++GPIGGDLSHEFIVLA+TGE+ VFC KD ++ P P  + D+ 
Sbjct: 181 YLNLFARMGLKAVPMRADTGPIGGDLSHEFIVLAETGESAVFCHKDLVEMPAPGPDLDWI 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  +V Q TA YAAT ++H+E  F++LPE  R+SARGIEVGHIF FGTKYS PM A
Sbjct: 241 N-GDLQPLVNQRTALYAATEEMHDEAAFNALPEGDRLSARGIEVGHIFSFGTKYSEPMKA 299

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DG+   VQMGSYG+G  R++ A+IE+SHD  GIIWP+SVAPF + ++N++  D  
Sbjct: 300 TVQGPDGQQVPVQMGSYGVGVSRLLGAIIEASHDEGGIIWPESVAPFDVGIVNMRQGDAA 359

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE  Y  L   G +V +DD   + G++FA  DL+G P Q+IVG K +++  VEIKH
Sbjct: 360 CDAACETAYNALKAAGREVLYDDTDARGGAKFATMDLIGLPWQLIVGPKGIAEGVVEIKH 419

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG R   SLE V++  + 
Sbjct: 420 RKTGERHTASLESVLDGLTK 439


>gi|254560035|ref|YP_003067130.1| proline-tRNA ligase [Methylobacterium extorquens DM4]
 gi|254267313|emb|CAX23145.1| proline-tRNA ligase [Methylobacterium extorquens DM4]
          Length = 442

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 255/441 (57%), Positives = 334/441 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  ++R E
Sbjct: 2   MRLSRYFLPILRETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLNKVCDVVRAE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PT+Q+ADLW ESGRY++YGKEMLRL DR+++ ++YGPT EEV+T+IFR+
Sbjct: 62  QDRAGAIEILMPTIQAADLWRESGRYEAYGKEMLRLKDRHERELLYGPTAEEVVTEIFRA 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SY++LP   YQI  KFRDE+RPRFG MRSREFLMKD YSFD+    ++HSYNK+FVS
Sbjct: 122 STRSYKDLPKNLYQISWKFRDEVRPRFGTMRSREFLMKDGYSFDIDQAAARHSYNKVFVS 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGGDLSHEFI+LA TGE++VFC + ++D P+P  + DFD
Sbjct: 182 YLRTFERLGLRAIPMRADTGPIGGDLSHEFIILAKTGESEVFCDQAYLDMPVPPPSVDFD 241

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L  +V+ WT+ YAAT ++H+E +F  +PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 242 DVAGLQGVVDAWTSHYAATDEMHDEAVFAEVPEASRLSARGIEVGHIFYFGTKYSTPMKA 301

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG +  V MGSYGIG  R+VAA IE+SHD  GIIWPD++APF ++LIN+K  D  
Sbjct: 302 VVTGPDGSERPVHMGSYGIGPSRLVAATIEASHDEAGIIWPDAIAPFDVALINLKVGDGA 361

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC +I A L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ K+E+K 
Sbjct: 362 CDAACAEIQAALETAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGKIELKR 421

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R +G RE +   ++       
Sbjct: 422 RASGERETLDPVDLPARIRRL 442


>gi|254713929|ref|ZP_05175740.1| prolyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|254717013|ref|ZP_05178824.1| prolyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261218820|ref|ZP_05933101.1| prolyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261321681|ref|ZP_05960878.1| prolyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|260923909|gb|EEX90477.1| prolyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261294371|gb|EEX97867.1| prolyl-tRNA synthetase [Brucella ceti M644/93/1]
          Length = 442

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 262/441 (59%), Positives = 339/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V AIIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLGIEAAINMLTAQ 441


>gi|304391639|ref|ZP_07373581.1| prolyl-tRNA synthetase [Ahrensia sp. R2A130]
 gi|303295868|gb|EFL90226.1| prolyl-tRNA synthetase [Ahrensia sp. R2A130]
          Length = 451

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 257/447 (57%), Positives = 341/447 (76%), Gaps = 1/447 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++YFLP+L+E PR+AEIASH+LMLR GMI Q S GIYSWLPLG K L  V  I+REE
Sbjct: 1   MRLTQYFLPVLKEAPREAEIASHQLMLRAGMIKQQSAGIYSWLPLGLKVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PT+QSADLW ESGRYD YGKEMLR+ DR+++ M++GPT+EE++TDIFR+
Sbjct: 61  QNRAGAVEVLMPTIQSADLWRESGRYDDYGKEMLRIQDRHERDMLFGPTNEEMITDIFRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  + ++ +Y +MFVS
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLNADAARAAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+K+IPMRA++GPIGGDLSHEF++LADTGE++VFC  DF    +P    D+ 
Sbjct: 181 YLRTFDRLGVKAIPMRADTGPIGGDLSHEFLILADTGESEVFCHSDFSKKTVPDAGVDYS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   +  IV+ WT+ YA T ++H+E L+  +PE+++++ARGIEVGHIF FG+KYS PM A
Sbjct: 241 DDALIAGIVDDWTSGYARTDEMHDEALWAEVPEDEQLNARGIEVGHIFNFGSKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKD  V+MGSYGIG  RVVAA++E+ HD  GIIWPDSVAPF + LIN+++ D+V
Sbjct: 301 KVTGPDGKDVPVEMGSYGIGPSRVVAALVEAGHDENGIIWPDSVAPFDVGLINLRSGDEV 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +YA+LS  G DV +DD   + G +FA+ADL+G P Q+IVG + +   +VE+K 
Sbjct: 361 TDAACDDMYAQLSAAGLDVLYDDTDGRAGGKFALADLIGLPWQLIVGPRGLKTGEVELKA 420

Query: 421 RLTGIREDMSLEEVINYASH-RFSNNR 446
           R +G R  +S++  IN  +     + +
Sbjct: 421 RASGERHTVSIDAAINQLTAWHVDSRK 447


>gi|148560203|ref|YP_001258799.1| prolyl-tRNA synthetase [Brucella ovis ATCC 25840]
 gi|166980104|sp|A5VQ02|SYP_BRUO2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148371460|gb|ABQ61439.1| prolyl-tRNA synthetase [Brucella ovis ATCC 25840]
          Length = 442

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 261/441 (59%), Positives = 338/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVFMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLDIEAAINMLTAQ 441


>gi|163850499|ref|YP_001638542.1| prolyl-tRNA synthetase [Methylobacterium extorquens PA1]
 gi|226701309|sp|A9W1L5|SYP_METEP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|163662104|gb|ABY29471.1| prolyl-tRNA synthetase [Methylobacterium extorquens PA1]
          Length = 441

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 255/441 (57%), Positives = 334/441 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  ++R E
Sbjct: 1   MRLSRYFLPILRETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLNKVCDVVRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PT+Q+ADLW ESGRY++YGKEMLRL DR+++ ++YGPT EEV+T+IFR+
Sbjct: 61  QDRAGAIEILMPTIQAADLWRESGRYEAYGKEMLRLKDRHERELLYGPTAEEVVTEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SY++LP   YQI  KFRDE+RPRFG MRSREFLMKD YSFD+    ++HSYNK+FVS
Sbjct: 121 STRSYKDLPKNLYQISWKFRDEVRPRFGTMRSREFLMKDGYSFDIDQAAARHSYNKVFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGGDLSHEFI+LA TGE++VFC + ++D P+P  + DFD
Sbjct: 181 YLRTFERLGLRAIPMRADTGPIGGDLSHEFIILAKTGESEVFCDQAYLDMPVPPPSVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L  +V+ WT+ YAAT ++H+E +F  +PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAGLQGVVDAWTSHYAATDEMHDEAVFAEVPEASRLSARGIEVGHIFYFGTKYSTPMKA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG +  V MGSYGIG  R+VAA IE+SHD  GIIWPD++APF ++LIN+K  D  
Sbjct: 301 VVTGPDGSERPVHMGSYGIGPSRLVAATIEASHDEAGIIWPDAIAPFDVALINLKVGDGA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC +I A L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ K+E+K 
Sbjct: 361 CDTACAEIQAALETAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGKIELKR 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R +G RE +   ++       
Sbjct: 421 RASGERETLDPVDLPARIRRL 441


>gi|254718929|ref|ZP_05180740.1| prolyl-tRNA synthetase [Brucella sp. 83/13]
 gi|265983916|ref|ZP_06096651.1| prolyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306838840|ref|ZP_07471671.1| prolyl-tRNA synthetase [Brucella sp. NF 2653]
 gi|264662508|gb|EEZ32769.1| prolyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306406124|gb|EFM62372.1| prolyl-tRNA synthetase [Brucella sp. NF 2653]
          Length = 442

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 260/441 (58%), Positives = 338/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GI+WP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIVWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLGIEAAINMLTAQ 441


>gi|163843095|ref|YP_001627499.1| prolyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|254706964|ref|ZP_05168792.1| prolyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|254709928|ref|ZP_05171739.1| prolyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|256031421|ref|ZP_05445035.1| prolyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|256159542|ref|ZP_05457310.1| prolyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|256254829|ref|ZP_05460365.1| prolyl-tRNA synthetase [Brucella ceti B1/94]
 gi|260168555|ref|ZP_05755366.1| prolyl-tRNA synthetase [Brucella sp. F5/99]
 gi|261222010|ref|ZP_05936291.1| prolyl-tRNA synthetase [Brucella ceti B1/94]
 gi|261314427|ref|ZP_05953624.1| prolyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261317474|ref|ZP_05956671.1| prolyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261758028|ref|ZP_06001737.1| prolyl-tRNA synthetase [Brucella sp. F5/99]
 gi|265988510|ref|ZP_06101067.1| prolyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|265997974|ref|ZP_06110531.1| prolyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|189083490|sp|B0CLE9|SYP_BRUSI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|163673818|gb|ABY37929.1| prolyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|260920594|gb|EEX87247.1| prolyl-tRNA synthetase [Brucella ceti B1/94]
 gi|261296697|gb|EEY00194.1| prolyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261303453|gb|EEY06950.1| prolyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261738012|gb|EEY26008.1| prolyl-tRNA synthetase [Brucella sp. F5/99]
 gi|262552442|gb|EEZ08432.1| prolyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|264660707|gb|EEZ30968.1| prolyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
          Length = 442

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 261/441 (59%), Positives = 338/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLGIEAAINMLTAQ 441


>gi|225627317|ref|ZP_03785354.1| prolyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|225617322|gb|EEH14367.1| prolyl-tRNA synthetase [Brucella ceti str. Cudo]
          Length = 445

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 261/441 (59%), Positives = 338/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 4   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 64  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 124 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 184 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 244 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 303

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 304 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 363

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 364 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 423

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 424 RKTGERQSLGIEAAINMLTAQ 444


>gi|114799658|ref|YP_760468.1| prolyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
 gi|123323241|sp|Q0C1C5|SYP_HYPNA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114739832|gb|ABI77957.1| prolyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
          Length = 439

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 249/439 (56%), Positives = 329/439 (74%), Gaps = 2/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK+FLP+ +E P DA I SH+LMLRTGMI Q+  GIYSWLPLG + L  +  I+REE
Sbjct: 1   MRLSKFFLPVSKEAPADAAIVSHQLMLRTGMIRQNGAGIYSWLPLGYRVLKRIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIEM +PTLQ ADLW ESGRYD YGKEMLR+ DR+++ M+YGPT+EE++TD+FR+
Sbjct: 61  MNRAGAIEMLMPTLQQADLWRESGRYDDYGKEMLRIKDRHERDMLYGPTNEELITDVFRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   Y  Q KFRDE+RPRFGVMR REFLMKDAYSFDLT E ++ +Y KMF +
Sbjct: 121 YVKSYKQLPLNLYHQQWKFRDEVRPRFGVMRGREFLMKDAYSFDLTEEDARAAYRKMFCA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F R+GL +IPMRA++GPIGGDLSHEFI+LADTGE+ VFC K  +D P P  + DF+
Sbjct: 181 YLNAFDRMGLTAIPMRADTGPIGGDLSHEFIILADTGESAVFCDKALLDLPAPGLDLDFE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L   V + T  YAAT ++H+E  F++LPE++RVSARGIEVGHIF+FGTKYS PM+A
Sbjct: 241 S--DLTPFVTERTGYYAATEEMHDEAAFNALPEDRRVSARGIEVGHIFFFGTKYSKPMNA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DG+   VQMGSYGIG  R++ A+IE+ HD  GI+WP+SVAPF + LIN++  ++ 
Sbjct: 299 VVQGPDGQMVPVQMGSYGIGVSRLLGAIIEACHDENGIVWPESVAPFDVGLINMRPGNEA 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC  +YA L+  G +V +D+  ++ G++FA  DL+G P Q  VG + V++ KVE+K+
Sbjct: 359 CDAACNTLYAALTAAGREVLYDETDDRAGAKFARMDLIGLPWQTTVGPRGVTEGKVEVKN 418

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG + D+ +E+++    
Sbjct: 419 RKTGEKHDVKIEDMLAQLK 437


>gi|260462251|ref|ZP_05810495.1| prolyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
 gi|259032111|gb|EEW33378.1| prolyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
          Length = 442

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 269/438 (61%), Positives = 340/438 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENPR+AEI SH+LMLR GMI Q  +G +SWLPLG++ LD V  IIREE
Sbjct: 1   MRLSRYFLPILKENPREAEIVSHRLMLRAGMIRQQGQGSFSWLPLGKRVLDKVCQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PT+QSADLW ESGRYD YGKEMLR+ DR D+ M+YGPT+EEV+T+I R+
Sbjct: 61  QNRAGALEILMPTIQSADLWRESGRYDDYGKEMLRIKDRQDRDMLYGPTNEEVVTEIVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +YN+MFVS
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDFEGAKAAYNRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LADTGE+QV+C +D++   +P ENTDF 
Sbjct: 181 YLRTFTRMGLQAIPMRADTGPIGGDLSHEFIILADTGESQVYCDRDYLSLQVPGENTDFA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   +  IV+ WT PYAAT ++H++  +D L E  RVSARGIEVGHIF+FG KYS PM A
Sbjct: 241 NDGEIADIVKTWTTPYAATDEMHDQAAWDKLGEADRVSARGIEVGHIFHFGDKYSKPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKDH+V  GSYGIG  R+VAA+IE+SHD  GIIWP++VAPF I +IN+K  D  
Sbjct: 301 KVTGPDGKDHFVSGGSYGIGPSRLVAAIIEASHDENGIIWPEAVAPFDIGVINMKVGDAD 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   C+++YA  +  G DV +DD  ++ G +FA ADL+G P QVIVG + V+  +VEIK+
Sbjct: 361 CDRVCDELYAAFADAGKDVLYDDTDQRPGGKFATADLIGLPWQVIVGPRGVAAGEVEIKN 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE + + E     
Sbjct: 421 RKTGERETLPIAEAKKRF 438


>gi|240137564|ref|YP_002962035.1| proline-tRNA ligase [Methylobacterium extorquens AM1]
 gi|240007532|gb|ACS38758.1| proline-tRNA ligase [Methylobacterium extorquens AM1]
          Length = 442

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 255/441 (57%), Positives = 334/441 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  ++R E
Sbjct: 2   MRLSRYFLPILRETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLNKVCDVVRAE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PT+Q+ADLW ESGRY++YGKEMLRL DR+++ ++YGPT EEV+T+IFR+
Sbjct: 62  QDRAGAIEILMPTIQAADLWRESGRYEAYGKEMLRLKDRHERELLYGPTAEEVVTEIFRA 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SY++LP   YQI  KFRDE+RPRFG MRSREFLMKD YSFD+    ++HSYNK+FVS
Sbjct: 122 STRSYKDLPKNLYQISWKFRDEVRPRFGTMRSREFLMKDGYSFDIDQAAARHSYNKVFVS 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGL++IPMRA++GPIGGDLSHEFI+LA TGE++VFC + ++D P+P  + DFD
Sbjct: 182 YLRTFERLGLRAIPMRADTGPIGGDLSHEFIILAKTGESEVFCDQAYLDMPVPPPSVDFD 241

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L  +V+ WT+ YAAT ++H+E +F  +PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 242 DVAGLQGVVDAWTSHYAATDEMHDEAVFAEVPEASRLSARGIEVGHIFYFGTKYSTPMKA 301

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG +  V MGSYGIG  R+VAA IE+SHD  GIIWPD++APF ++LIN+K  D  
Sbjct: 302 VVTGPDGSERPVHMGSYGIGPSRLVAATIEASHDEAGIIWPDAIAPFDVALINLKVGDGA 361

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC +I A L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ K+E+K 
Sbjct: 362 CDTACAEIQAALETAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGKIELKR 421

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R +G RE +   ++       
Sbjct: 422 RASGERETLDPVDLPARIRRL 442


>gi|306843758|ref|ZP_07476357.1| prolyl-tRNA synthetase [Brucella sp. BO1]
 gi|306275949|gb|EFM57662.1| prolyl-tRNA synthetase [Brucella sp. BO1]
          Length = 442

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 259/441 (58%), Positives = 338/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + +++  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLNLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GI+WP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIVWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLGIEAAINMLTAQ 441


>gi|167646774|ref|YP_001684437.1| prolyl-tRNA synthetase [Caulobacter sp. K31]
 gi|189083491|sp|B0SZ28|SYP_CAUSK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167349204|gb|ABZ71939.1| prolyl-tRNA synthetase [Caulobacter sp. K31]
          Length = 445

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 255/441 (57%), Positives = 325/441 (73%), Gaps = 2/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L  V  I+REE
Sbjct: 1   MRLSRYFLPVLKEAPSDAQIVSHQLMLRAGMIRQEAAGIYAWLPLGLRVLKKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +PT+Q ADLW ESGRYD YG EMLR+ DR+ + ++YGPT EEV+TDIFR+
Sbjct: 61  MDRAGAIELLMPTIQLADLWRESGRYDDYGDEMLRITDRHKRDLLYGPTAEEVVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL  EG++ +YN+MFV+
Sbjct: 121 SVKSYKDLPKNLYNIQWKFRDERRPRFGVMRGREFLMKDAYSFDLDAEGARKAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL +F R+GLK++PMRA++GPIGGDLSHEFIVLA+TGE+ VFC KD ++   P  + D+ 
Sbjct: 181 YLNLFSRMGLKAVPMRADTGPIGGDLSHEFIVLAETGESAVFCHKDLVEMAAPGPDIDWY 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L  +V + TA YAAT ++H+E  F +LPE  R+SARGIEVGHIF FGTKYS PM A
Sbjct: 241 --GDLQPLVNERTALYAATEEMHDEAAFAALPEGDRLSARGIEVGHIFSFGTKYSEPMKA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKD  VQMGSYG+G  R++ A+IE+SHD  GIIWP+SVAPF + +IN++  D  
Sbjct: 299 LVTGPDGKDVPVQMGSYGVGVSRLLGAIIEASHDEGGIIWPESVAPFDVGVINMRQGDAA 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +ACE  Y  L   G DV +DD   + G++FA  DL+G P Q+IVG K +++  VE+K+
Sbjct: 359 CDEACETAYKALQAAGRDVLYDDNDTRGGAKFATMDLIGVPWQLIVGPKGIAEGVVELKN 418

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R    L EVI   S +
Sbjct: 419 RKTGERHSAPLAEVIAQLSAQ 439


>gi|254689076|ref|ZP_05152330.1| prolyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|254693559|ref|ZP_05155387.1| prolyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|256257325|ref|ZP_05462861.1| prolyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|260754574|ref|ZP_05866922.1| prolyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|260883601|ref|ZP_05895215.1| prolyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|261213824|ref|ZP_05928105.1| prolyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|297248174|ref|ZP_06931892.1| prolyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
 gi|260674682|gb|EEX61503.1| prolyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|260873129|gb|EEX80198.1| prolyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|260915431|gb|EEX82292.1| prolyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|297175343|gb|EFH34690.1| prolyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
          Length = 442

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 261/441 (59%), Positives = 337/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKTIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLGIEAAINMLTAQ 441


>gi|256369253|ref|YP_003106761.1| prolyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|255999413|gb|ACU47812.1| prolyl-tRNA synthetase [Brucella microti CCM 4915]
          Length = 442

 Score =  416 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 260/441 (58%), Positives = 337/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEML + DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLCIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLGIEAAINMLTAQ 441


>gi|328543706|ref|YP_004303815.1| Prolyl-tRNA synthetase [polymorphum gilvum SL003B-26A1]
 gi|326413449|gb|ADZ70512.1| Prolyl-tRNA synthetase [Polymorphum gilvum SL003B-26A1]
          Length = 442

 Score =  416 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 255/442 (57%), Positives = 333/442 (75%), Gaps = 2/442 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+E P++AEI SH+LMLR GMI Q S GIYSWLPLG + L  +  I+ EE
Sbjct: 1   MRLSRFFLPILKETPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPLGFRVLRKIEKIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+++ +PT+Q ADLW ESGRYD+YGKEMLR+ DR+++ M+YGPT+EE++T+IFRS
Sbjct: 61  QARAGAVQLLMPTIQPADLWRESGRYDAYGKEMLRITDRHEREMLYGPTNEEMITEIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFG+MR REFLMKDAYSFD+  E ++H+YN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGIMRGREFLMKDAYSFDIDKEAARHAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGGD+SHEFI+LA TGE+ VFC +  +D P P E+TDF 
Sbjct: 181 YLRTFARMGLKAIPMRADTGPIGGDMSHEFIILASTGESAVFCDRSLLDLPTPGEDTDF- 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L+ IVE WT PYAAT ++H+E  F +LPE +RVSARGIEVGHIFYFGTKYS PM A
Sbjct: 240 -LSDLSPIVEAWTTPYAATDEMHDETTFAALPEAERVSARGIEVGHIFYFGTKYSEPMGA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               A+G +  V MGSYG+G  R++ A+IE++HD  GIIWP SVAPF + LIN+K  D  
Sbjct: 299 RVMTAEGTEVPVHMGSYGVGVSRLLGALIEANHDDDGIIWPASVAPFHVGLINLKPGDAD 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC  +YARL  VG +V +DD+  + G++FA  DL+G P Q+I G + + D  VE+K 
Sbjct: 359 TDSACAGLYARLEAVGVEVLYDDVDTRAGAKFATMDLIGLPFQIIAGPRGLKDGVVEVKE 418

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R +G RE +SLE   N      
Sbjct: 419 RASGQRESLSLEAAFNRVREAL 440


>gi|256060932|ref|ZP_05451090.1| prolyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261324932|ref|ZP_05964129.1| prolyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261300912|gb|EEY04409.1| prolyl-tRNA synthetase [Brucella neotomae 5K33]
          Length = 442

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 261/441 (59%), Positives = 337/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAGTGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKLGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLGIEAAINMLTAQ 441


>gi|220924023|ref|YP_002499325.1| prolyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
 gi|254782908|sp|B8IUW4|SYP_METNO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219948630|gb|ACL59022.1| prolyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
          Length = 443

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 257/439 (58%), Positives = 339/439 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  +IR E
Sbjct: 1   MRLSRYFLPILRETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLNRVTEVIRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R+GAIE+ +PT+QSA+LW ESGRY++YGKEMLR+ DR+++ M++GPT+EE++T IFRS
Sbjct: 61  QDRSGAIELLMPTIQSAELWRESGRYEAYGKEMLRIRDRHEREMLFGPTNEEMITAIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LP   Y IQ KFRDE+RPRFG MRSREFLMKDAYSFDL   G++H+YNKMFV+
Sbjct: 121 AVRSYKDLPKNLYHIQWKFRDEVRPRFGTMRSREFLMKDAYSFDLDEAGARHAYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGLK+IPMRAE+GPIGG+LSHEFI+LA TGE++VFC + ++ FPIP  + DFD
Sbjct: 181 YLRTFARLGLKAIPMRAETGPIGGNLSHEFIILAQTGESEVFCDRAYLGFPIPPASIDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +L + V+ WT+ YAATS++H    F+++PE  R++ARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAALQATVDHWTSRYAATSEMHEPAAFEAVPEEARMAARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG++  V MGSYGIG  R+VAA+IE+SHD  GI+WPDSVAPF ++L+N+K  D  
Sbjct: 301 RVTGPDGQERPVHMGSYGIGPSRLVAAIIEASHDEAGIVWPDSVAPFDVALLNLKVGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC K+   L   G  V  DD  E+ G++FA ADL+G P QVIVG K +++  +E+K 
Sbjct: 361 TDAACAKLQEELEAAGLTVLTDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGTIELKR 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG RE ++++ V     
Sbjct: 421 RATGEREIVAVDAVAPRLR 439


>gi|254701588|ref|ZP_05163416.1| prolyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|261752141|ref|ZP_05995850.1| prolyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|261741894|gb|EEY29820.1| prolyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
          Length = 442

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 261/441 (59%), Positives = 337/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKFYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLGIEAAINMLTAQ 441


>gi|154253644|ref|YP_001414468.1| prolyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
 gi|171769681|sp|A7HY28|SYP_PARL1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|154157594|gb|ABS64811.1| prolyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
          Length = 439

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 245/440 (55%), Positives = 330/440 (75%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP L+ENP +A+IASH+LMLR GM+ Q + GIY+WLPLG   L  +  I+R+E
Sbjct: 1   MRLSRYFLPTLKENPAEAQIASHRLMLRAGMVRQTAAGIYAWLPLGLAVLRKIEGIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GAIE+ +PTLQSADLW +SGRYD+YG EMLR+ DR+++ M+YGPT+EE++TDIFR 
Sbjct: 61  QKRAGAIELLMPTLQSADLWRQSGRYDAYGPEMLRIVDRHERDMLYGPTNEEMITDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR+LP   + IQ KFRDE+RPRFGVMR REFLMKD YSFDL  EG++ +Y KMFVS
Sbjct: 121 AVRSYRDLPRNLFHIQWKFRDEIRPRFGVMRGREFLMKDGYSFDLDVEGARRAYRKMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPM A++GPIGGD+SHEFI+LA+TGE+ VFC +D +D  +P ++ D++
Sbjct: 181 YLRSFARMGLKAIPMAADTGPIGGDMSHEFIILAETGESAVFCHRDLVDMAVPGDDIDYE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               LN ++   T  YAAT + H+   FD+ +P++K++SARGIEVGHIF+FGTKYS  M 
Sbjct: 241 T--DLNPVIAARTDLYAATDEKHDAAKFDAEVPKDKQLSARGIEVGHIFFFGTKYSQSMG 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DGK+  VQMGSYGIG  R+V A+IE+SHD  GI+WPD+VAPF + LIN+K+ D 
Sbjct: 299 ALVTGPDGKEVPVQMGSYGIGVSRLVGAIIEASHDDAGIVWPDAVAPFTVGLINLKSGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE IY +L+  G DV +DD  E+ G++F+  DL+G P Q+++G + +    VE+K
Sbjct: 359 ETDAACESIYEKLTAQGIDVLYDDTDERAGAKFSNMDLIGLPWQLVIGPRGLKSGTVELK 418

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R TG +E++S E  +   +
Sbjct: 419 RRATGEKEELSPEAALAKIA 438


>gi|62289771|ref|YP_221564.1| prolyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82699699|ref|YP_414273.1| prolyl-tRNA synthetase [Brucella melitensis biovar Abortus 2308]
 gi|189024014|ref|YP_001934782.1| prolyl-tRNA synthetase [Brucella abortus S19]
 gi|254697210|ref|ZP_05159038.1| prolyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260545481|ref|ZP_05821222.1| prolyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260761620|ref|ZP_05873963.1| prolyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|81309431|sp|Q57DT1|SYP_BRUAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152174|sp|Q2YNE3|SYP_BRUA2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226699122|sp|B2S561|SYP_BRUA1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|62195903|gb|AAX74203.1| ProS, prolyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82615800|emb|CAJ10798.1| tRNA synthetases, class-II (G, H, P and S):Prolyl-tRNA synthetase,
           class IIa:Anticodon binding domain:Prolyl-tRNA
           synthetase [Brucella melitensis biovar Abortus 2308]
 gi|189019586|gb|ACD72308.1| prolyl-tRNA synthetase [Brucella abortus S19]
 gi|260096888|gb|EEW80763.1| prolyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260672052|gb|EEX58873.1| prolyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 442

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 260/441 (58%), Positives = 337/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKTIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + ++  IN  + +
Sbjct: 421 RKTGERQSLGIKAAINMLTAQ 441


>gi|237815257|ref|ZP_04594255.1| prolyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|237790094|gb|EEP64304.1| prolyl-tRNA synthetase [Brucella abortus str. 2308 A]
          Length = 445

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 260/441 (58%), Positives = 337/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 4   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 64  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 124 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 184 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 244 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 303

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 304 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKTIAPFGAGIVNMKPGDEG 363

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 364 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 423

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + ++  IN  + +
Sbjct: 424 RKTGERQSLGIKAAINMLTAQ 444


>gi|225852336|ref|YP_002732569.1| prolyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|256044499|ref|ZP_05447403.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113355|ref|ZP_05454213.1| prolyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|256264165|ref|ZP_05466697.1| prolyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563853|ref|ZP_05834339.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|265990923|ref|ZP_06103480.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994761|ref|ZP_06107318.1| prolyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|114152175|sp|Q8YGL8|SYP_BRUME RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782889|sp|C0RIF7|SYP_BRUMB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225640701|gb|ACO00615.1| prolyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|260153869|gb|EEW88961.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|262765874|gb|EEZ11663.1| prolyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|263001707|gb|EEZ14282.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094383|gb|EEZ18228.1| prolyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408844|gb|ADZ65909.1| prolyl-tRNA synthetase [Brucella melitensis M28]
 gi|326538559|gb|ADZ86774.1| prolyl-tRNA synthetase [Brucella melitensis M5-90]
          Length = 442

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 260/441 (58%), Positives = 336/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L   V +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDTVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKTIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATIDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 421 RKTGERQSLGIEAAINMLTAQ 441


>gi|17987423|ref|NP_540057.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|17983114|gb|AAL52321.1| prolyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
          Length = 445

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 260/441 (58%), Positives = 336/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 4   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 64  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 124 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 184 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L   V +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 244 NDAQLTDTVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 303

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 304 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKTIAPFGAGIVNMKPGDEG 363

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 364 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATIDLIGLPTQVIVGPRGVAAGEVEVKD 423

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG R+ + +E  IN  + +
Sbjct: 424 RKTGERQSLGIEAAINMLTAQ 444


>gi|163759522|ref|ZP_02166607.1| prolyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
 gi|162283119|gb|EDQ33405.1| prolyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
          Length = 447

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 275/445 (61%), Positives = 343/445 (77%), Gaps = 5/445 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYFLPIL+ENP+DAEI SH+LM R GMI Q S GIYSWLPLG++ LD V  I+REE
Sbjct: 1   MRLSKYFLPILKENPKDAEIVSHRLMARAGMIKQQSAGIYSWLPLGKRVLDKVCNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PT+Q ADLW ESGRYD YG+EMLR+ DRND+ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGAIEILMPTIQPADLWRESGRYDDYGQEMLRINDRNDREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL  E SK +YN+MFVS
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDERRPRFGVMRGREFLMKDAYSFDLDYEASKAAYNRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R GLKSIPMRA++GPIGG LSHEFIVLA+TGE+QVFC +DF  F +P  + ++D
Sbjct: 181 YLRTFERCGLKSIPMRADTGPIGGSLSHEFIVLAETGESQVFCHRDFDGFAVPPVDMNYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL-----FDSLPENKRVSARGIEVGHIFYFGTKYS 295
           D  ++ ++VEQWT P+AAT ++ +++      +D L E+ RVSARGIEVGHIF+FGTKYS
Sbjct: 241 DAAAVAAVVEQWTTPFAATDEIMDKEEWAREAWDGLGEDARVSARGIEVGHIFHFGTKYS 300

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            PM+A  +G DGK HYV MGSYGIG  R++ A+IE+SHD  GIIWP  VAPF + LIN+K
Sbjct: 301 EPMNAFVQGPDGKQHYVSMGSYGIGPSRLLGAIIEASHDENGIIWPKGVAPFDVGLINMK 360

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             D  C  ACE+I   L   G ++ +DD  E+ G++FA ADL+G P+QVI G + V+D  
Sbjct: 361 PGDAACDAACERIETALENAGIELLYDDTDERAGAKFAKADLIGLPIQVIAGPRAVADGN 420

Query: 416 VEIKHRLTGIREDMSLEEVINYASH 440
           VEIK R TG RE +S++E IN  + 
Sbjct: 421 VEIKVRATGERETLSIDEAINRLAQ 445


>gi|27379988|ref|NP_771517.1| prolyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
 gi|81841648|sp|Q89KM8|SYP_BRAJA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|27353142|dbj|BAC50142.1| prolyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
          Length = 439

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 251/439 (57%), Positives = 332/439 (75%), Gaps = 3/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GMI Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGFRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R+GA+E+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QDRSGALELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+NLP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL    ++ +YNKMFV+
Sbjct: 121 YVKSYKNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLNEAAARVAYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ VF ++D +D P+P E+ D++
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVFINRDVLDLPVPGEDVDYE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH+   F+  +PE KR++ RGIEVG IFYFGTKYS PM 
Sbjct: 241 S--DLTPIIKQWTSVYAATEDVHDAARFEQEVPEAKRLNTRGIEVGQIFYFGTKYSEPMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R++ A+IE+ HD  GI WP++VAPF+  ++N+K  D 
Sbjct: 299 AMVAGPDGVDVPIHGGSYGVGVSRLLGAIIEACHDDAGIKWPEAVAPFRAVVLNLKQGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACEK+YA L   G DV +DD  ++ G++FA ADL+G P Q+++G K ++D KVE+K
Sbjct: 359 AVDAACEKLYAELQAKGVDVLYDDTDQRAGAKFAAADLIGIPWQIMIGPKGLADGKVELK 418

Query: 420 HRLTGIREDMSLEEVINYA 438
            R  G RE MS  + +   
Sbjct: 419 RRSDGSRETMSPADAVARL 437


>gi|83858393|ref|ZP_00951915.1| prolyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
 gi|83853216|gb|EAP91068.1| prolyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
          Length = 442

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 246/441 (55%), Positives = 323/441 (73%), Gaps = 4/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRYFLPVLKETPSDAQIVSHQLMLRAGMIRQEAAGIYAWLPLGLRVLRKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PTLQ ADLW ESGRYD YGKEMLR+ DR+++ ++YGPT+EE++T+IFR 
Sbjct: 61  QDRAGAIELLMPTLQPADLWRESGRYDDYGKEMLRIVDRHERDLLYGPTNEEMITEIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + +SY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  EG+  +YNKMFV+
Sbjct: 121 YCRSYKDLPKILYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDYEGAVKAYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F R+GLKS+PMRA++GPIGG LSHEFI+LA+TGE++VFC    +D P P E    D
Sbjct: 181 YLNTFARMGLKSVPMRADTGPIGGKLSHEFIILAETGESEVFCDSRLVDMPAPGE---VD 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L   V+Q TA YAAT ++H+   F++ +PE +R+SARGIEVGHIF FGTKYS PM 
Sbjct: 238 FDGDLQPYVDQRTALYAATEEMHDAARFEAEVPEERRLSARGIEVGHIFNFGTKYSDPMK 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DGK+  V MGSYG+G  R++ A+IE+SHD  G+IWP++VAPF   +IN++A D 
Sbjct: 298 AQVAGPDGKETAVHMGSYGVGVSRLLGAIIEASHDENGVIWPEAVAPFGAGVINMRAGDA 357

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            C  A ++IY +L   G +   DD     G++FA  DL+G P QVIVG + + + K E+K
Sbjct: 358 DCAKAADEIYTKLDAAGLEPLLDDTAASAGAKFATMDLIGVPYQVIVGPRGLKEGKAEVK 417

Query: 420 HRLTGIREDMSLEEVINYASH 440
            R +G R ++SLE+ +N    
Sbjct: 418 IRASGERHELSLEDAVNRLVE 438


>gi|170748459|ref|YP_001754719.1| prolyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
 gi|226701311|sp|B1LUL8|SYP_METRJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|170654981|gb|ACB24036.1| prolyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
          Length = 441

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 254/439 (57%), Positives = 334/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P L+E P++AEI SH+LMLR G++ Q + GIY+WLPLG + L+ V A+IR E
Sbjct: 1   MRLSRYFMPTLRETPKEAEIVSHRLMLRAGLVRQEAAGIYAWLPLGLRVLERVCAVIRRE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R+GA+E+ +PT+QSA+LW ESGRYD+YGKEMLRL DR+D+ M+YGPT EE++T+IFR+
Sbjct: 61  QDRSGAVEILMPTVQSAELWRESGRYDAYGKEMLRLKDRHDREMLYGPTAEEMVTEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LP   YQI  KFRDE+RPRFG MRSREFLMKDAYSFD    G++H+YN+MFV+
Sbjct: 121 SVRSYKDLPKNLYQISWKFRDEVRPRFGTMRSREFLMKDAYSFDFDQAGARHAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F  LGLK+IPMRA++GPIGGDLSHEFI+LA TGE++VFC K ++ F IP    DFD
Sbjct: 181 YLRTFAGLGLKAIPMRADTGPIGGDLSHEFIILAKTGESEVFCDKAYLGFDIPPATVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +L  IV+ WT+ YAAT ++H    F  +PE+ R++ARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAALQGIVDAWTSHYAATEEMHEPAAFAEVPEDSRMAARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG +  V MGSYGIG  R+VAA+IE+SHD  GIIWPD+VAPF ++LIN+K  D  
Sbjct: 301 KVAGPDGIERPVHMGSYGIGPSRLVAAIIEASHDEAGIIWPDAVAPFDVALINLKVGDSA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC +I + L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ KVE+K 
Sbjct: 361 TEAACAQIQSDLEAAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGKVELKR 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R  G RE ++  +++    
Sbjct: 421 RAGGERESLATVDLLARIR 439


>gi|161618786|ref|YP_001592673.1| prolyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|254704135|ref|ZP_05165963.1| prolyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|260566616|ref|ZP_05837086.1| prolyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|261754801|ref|ZP_05998510.1| prolyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|189083489|sp|A9MAJ9|SYP_BRUC2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|161335597|gb|ABX61902.1| prolyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|260156134|gb|EEW91214.1| prolyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|261744554|gb|EEY32480.1| prolyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
          Length = 442

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 260/441 (58%), Positives = 337/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R  G R+ + +E  IN  + +
Sbjct: 421 RKMGERQSLGIEAAINMLTAQ 441


>gi|323139097|ref|ZP_08074155.1| prolyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
 gi|322395661|gb|EFX98204.1| prolyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
          Length = 447

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 264/446 (59%), Positives = 339/446 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR G+I Q S GIY+WLPLG K L+N+  IIREE
Sbjct: 1   MRLSRYFLPILRETPKEAEIVSHRLMLRAGLIRQESAGIYAWLPLGLKVLNNITRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE  +PT+QSADLW ESGRYD+YGKEMLR+ DR+D+ M++GPT+EE++T+IFR+
Sbjct: 61  QNRAGAIECLMPTIQSADLWRESGRYDAYGKEMLRITDRHDREMLFGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDLT E  +HSYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLTAEAGRHSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL +IPM AESGPIGG+LSHEFI+LA+TGE++VFC KDF+ F  P  N DFD
Sbjct: 181 YLRTFARMGLTAIPMAAESGPIGGNLSHEFIILAETGESEVFCHKDFLSFAPPPANVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +L  IV +WT+ YAATS++H+   ++++PE  RVSARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DAPALEEIVGKWTSRYAATSEMHDAAAYEAVPEASRVSARGIEVGHIFYFGTKYSEPMKA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+  VQMGSYGIG  R+VAA+IE+ HD  GI+WP+ VAPF + + ++K  D  
Sbjct: 301 VVNGPDGKEVVVQMGSYGIGPSRLVAAIIEAGHDEAGIVWPEQVAPFHVGVADLKVGDAN 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C  +  +L   G DV  DD  E+ G++FA  DL+G P Q++VG K +++ +VE+K 
Sbjct: 361 TGRVCGDLVQQLENAGLDVLHDDRDERPGAKFATLDLIGLPWQILVGPKGLAEGRVEVKR 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R TG RE +S E+V+          R
Sbjct: 421 RRTGERELLSPEDVVARIVEAVKQAR 446


>gi|254502934|ref|ZP_05115085.1| prolyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
 gi|222439005|gb|EEE45684.1| prolyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
          Length = 442

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 248/444 (55%), Positives = 335/444 (75%), Gaps = 2/444 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPILKETPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPLGLKVLRKIERIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+++ +PT+Q ADLW ESGRYD+YGKEMLR+ DR+++ M++GPT+EE++TDIFRS
Sbjct: 61  QARAGAVQLLMPTIQPADLWRESGRYDAYGKEMLRITDRHEREMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFG+MR REFLMKDAYSFDL  E ++H+YN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGIMRGREFLMKDAYSFDLDQETARHAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPM+A++GPIGGDLSHEFI+LA+TGE++VF  K  ++ PIP+++TDF 
Sbjct: 181 YLRTFDRMGLKAIPMKADTGPIGGDLSHEFIILAETGESEVFLDKSLLEMPIPAKDTDFW 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L+ IVE WT PYAAT ++H+E  F +L E+ RVSARGIEVGHIFYFGTKYS  M A
Sbjct: 241 S--DLSPIVESWTTPYAATDEMHDEAAFGALEEDTRVSARGIEVGHIFYFGTKYSDAMGA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               A+G +  V MGSYG+G  R++ A+IE++HD  GIIWP SVAPF + +IN++  D +
Sbjct: 299 KVATAEGTEVPVHMGSYGVGVSRLLGALIEANHDEDGIIWPKSVAPFHVGIINMRPGDDL 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               CE +YA+L   G +V +DD   + G++FA  DL+G P QV+ G + + D  +E+K 
Sbjct: 359 TDPVCEDLYAKLEAAGIEVLYDDTDSRAGAKFATMDLIGLPFQVVAGPRGLKDGVLEVKD 418

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R TG +E ++ E  +N  +   ++
Sbjct: 419 RATGEKEMLTPEATLNKLTAALTD 442


>gi|91977335|ref|YP_569994.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
 gi|123762679|sp|Q135Z6|SYP_RHOPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91683791|gb|ABE40093.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
          Length = 439

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 249/440 (56%), Positives = 333/440 (75%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ SYN+MFV+
Sbjct: 121 YVKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAAARKSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+C +D ++ P+P E+ D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYCDRDVLNLPVPGEDVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH+   ++S +PE  R++ RGIEVG IFYFGTKYS  M 
Sbjct: 241 --GDLTPIIQQWTSVYAATEDVHDAARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R+V A+IE+ HD  GI WP+ VAPF+++++N+K  D 
Sbjct: 299 ANVAGPDGADAPIHGGSYGVGVSRLVGAIIEACHDENGIKWPEEVAPFRVAILNLKQGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE++Y  L+  G DV +DD  ++ G++FA ADL+G P QV+VG K ++D KVE+K
Sbjct: 359 QTDAACEQLYRELAAKGVDVLYDDTDQRAGAKFATADLIGIPWQVLVGPKGLADGKVELK 418

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R  G RE ++L E +   +
Sbjct: 419 RRSDGSRETIALAEAVARLA 438


>gi|254469374|ref|ZP_05082779.1| prolyl-tRNA synthetase [Pseudovibrio sp. JE062]
 gi|211961209|gb|EEA96404.1| prolyl-tRNA synthetase [Pseudovibrio sp. JE062]
          Length = 441

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 255/443 (57%), Positives = 334/443 (75%), Gaps = 3/443 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q S GIY+WLPLG + L+ +  I+ EE
Sbjct: 1   MRLSRYFLPILKETPKEAEIVSHRLMLRAGMIRQQSAGIYAWLPLGHRVLNKIQRIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GA+++ +PT+Q ADLW ESGRYD+YGKEMLR+ DR+++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRSGAVQLLMPTIQPADLWRESGRYDAYGKEMLRIEDRHEREMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E S  +Y +MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDKERSTEAYRRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL +IPM+A++GPIGGDLSHEFIVLA TGE++VF  KD +D PIP E+TDFD
Sbjct: 181 YLRTFARMGLTAIPMKADTGPIGGDLSHEFIVLASTGESEVFLDKDILDLPIPGEDTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L+ I+EQWT PYAAT ++++E  F ++ E+K+VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 --GDLSGIIEQWTTPYAATDEMYDEAAFGAVAEDKKVSARGIEVGHIFHFGTKYSEPMGA 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               A+GK+  VQMGSYGIG  R++ A+IE+ HD  GIIWP  VAPF + LIN+KA  + 
Sbjct: 299 KVMTAEGKEVPVQMGSYGIGVSRLLGAIIEACHDDDGIIWPKEVAPFHVGLINMKAGSE- 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C + CE +YA L K G +V +DD     G +FA  DL+G P Q++VG + +   +VE+K 
Sbjct: 358 CDEVCESVYAELEKAGIEVLYDDRKTSAGQKFASMDLIGLPYQLVVGPRGLKTGEVEVKD 417

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R  G RE ++ E  +N       
Sbjct: 418 RAAGDREMLTPEAAVNKLISALK 440


>gi|115524551|ref|YP_781462.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
 gi|122296196|sp|Q07NK2|SYP_RHOP5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|115518498|gb|ABJ06482.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
          Length = 439

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 241/441 (54%), Positives = 327/441 (74%), Gaps = 3/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRYFLPILKETPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MFV+
Sbjct: 121 YVKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEAAARRAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+C  + ++ P+P E+ D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESAVYCDSEVLNLPVPGEDVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH  + FD  +P  +++  RGIEVG IFYFGTKYS  M 
Sbjct: 241 --GDLTPIIKQWTSVYAATEDVHEAERFDREVPAERKLHTRGIEVGQIFYFGTKYSEAMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +  +  GSYG+G  R++ A+IE+ HD  GI WP++VAPF+ +++N+K    
Sbjct: 299 ALVAGPDGVEVPIHGGSYGVGVSRLLGAIIEACHDENGIKWPEAVAPFRAAILNLKQGAA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE++Y  L   G DV +DD  ++ G++FA ADL+G P Q++VG K ++D  VE+K
Sbjct: 359 ETDAACEQLYRELIAKGVDVLYDDTDQRAGAKFATADLIGIPWQILVGPKGLADGTVELK 418

Query: 420 HRLTGIREDMSLEEVINYASH 440
            R  G RE+++L E +   + 
Sbjct: 419 RRADGSRENVALAEAVARLTQ 439


>gi|23501709|ref|NP_697836.1| prolyl-tRNA synthetase [Brucella suis 1330]
 gi|81847158|sp|Q8G197|SYP_BRUSU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|23347633|gb|AAN29751.1| prolyl-tRNA synthetase [Brucella suis 1330]
          Length = 442

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 259/441 (58%), Positives = 336/441 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRY +YGKEMLR+ DR ++ M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYGAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF 
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFR 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   L  IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A
Sbjct: 241 NDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ 
Sbjct: 301 KVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K 
Sbjct: 361 CDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKD 420

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R  G R+ + +E  IN  + +
Sbjct: 421 RKMGERQSLGIEAAINMLTAQ 441


>gi|296536135|ref|ZP_06898264.1| proline--tRNA ligase [Roseomonas cervicalis ATCC 49957]
 gi|296263547|gb|EFH10043.1| proline--tRNA ligase [Roseomonas cervicalis ATCC 49957]
          Length = 436

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 239/438 (54%), Positives = 322/438 (73%), Gaps = 5/438 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+E P +A IASHKLMLR GMI Q S GIY+WLPLG + L  V+ I+REE
Sbjct: 1   MRLSRAFLPTLKEVPAEAAIASHKLMLRAGMIRQTSAGIYAWLPLGLRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PT+QSA+LW +SGRYD YGKEMLR+ DR+++ M++GPT+EE++TD+F+S
Sbjct: 61  QDAAGAQEILMPTIQSAELWKQSGRYDDYGKEMLRITDRHEREMLFGPTNEEMVTDLFKS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + KSYR+LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E ++ SY KMFV+
Sbjct: 121 YAKSYRDLPRNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDIDAEAARLSYKKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGGDLSHEFI+LA+TGE+QV+  KD ++F + ++  D++
Sbjct: 181 YLRTFARMGLKAIPMRADTGPIGGDLSHEFIILAETGESQVYLHKDLLEFDVLAQKPDYE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L+  V+ WT+ YAAT ++H+E  +++L    +VSARGIEVGHIFYFG KYS  M  
Sbjct: 241 --GDLDPTVDFWTSRYAATDEMHDEAAWNALGAENQVSARGIEVGHIFYFGEKYSKAMGL 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG     QMGSYGIG  R++ A+IE++HD  GI WPD+VAPF+ +++N+K  D  
Sbjct: 299 TVAGPDGNPVIPQMGSYGIGVSRLLGALIEANHDDAGIKWPDAVAPFRCAILNLKPGDLA 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                EK+YA L   G D  +DD GE+ G +F  ADL G+P Q I+G +  ++  +E+K 
Sbjct: 359 TDALSEKLYAAL---GGDAVYDDRGERAGVKFNDADLAGYPWQAIIGPRGAANGIIELKR 415

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG R+++S+E  +   
Sbjct: 416 RATGERQEVSIEAALAQI 433


>gi|110633394|ref|YP_673602.1| prolyl-tRNA synthetase [Mesorhizobium sp. BNC1]
 gi|123162548|sp|Q11JI8|SYP_MESSB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110284378|gb|ABG62437.1| prolyl-tRNA synthetase [Chelativorans sp. BNC1]
          Length = 442

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 261/434 (60%), Positives = 347/434 (79%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E PR+AEI SH+LMLR+GMI Q   G +SWLPLG++ LD V  I+REE
Sbjct: 1   MRVSRYFLPILKETPREAEIVSHRLMLRSGMIRQQGAGSFSWLPLGKRVLDKVCQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA E+ +PT+QSADLW+ESGRY+ YGKEMLR+ DR D+AM+YGPT+EE++TDIFR+
Sbjct: 61  QDRAGAQEILMPTIQSADLWIESGRYNDYGKEMLRIRDRQDRAMLYGPTNEEMVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +YN+MFV+
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKAAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGGDLSHEFI+LA TGE++VFC+KDF+D P+P  + DF 
Sbjct: 181 YLRTFARMGLKAIPMRADTGPIGGDLSHEFIILASTGESEVFCNKDFLDLPVPPADVDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   +  +V +WT PYAAT ++H+E  +  +P  K+++ARGIEVGHIF+FGTKYS PM+A
Sbjct: 241 NDAEIGGVVSEWTTPYAATDEMHDEAAWAEVPAEKQLAARGIEVGHIFHFGTKYSKPMNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG++H+V MGSYGIG  R+ AA+IE+SHD  GIIWP+SVAPF ++LIN+K  D  
Sbjct: 301 KVTGPDGQEHFVSMGSYGIGPTRLTAAIIEASHDDGGIIWPESVAPFDVALINMKVGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE++YA ++  G +V +DD  ++ G++FA ADL+G P QVIVG + ++  +VE+K+
Sbjct: 361 CDRVCEELYAGMTAAGREVLYDDTDQRAGAKFATADLIGLPWQVIVGPRGIAAGEVEVKN 420

Query: 421 RLTGIREDMSLEEV 434
           R TG RE++ +  V
Sbjct: 421 RATGERENLPISAV 434


>gi|13471387|ref|NP_102953.1| prolyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
 gi|81855688|sp|Q98KS5|SYP_RHILO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|14022129|dbj|BAB48739.1| proline-tRNA ligase [Mesorhizobium loti MAFF303099]
          Length = 442

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 265/438 (60%), Positives = 339/438 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENPR+AEI SH+LMLR GMI Q  +G +SWLPLG++ LD V  IIREE
Sbjct: 1   MRLSRYFLPILKENPREAEIVSHRLMLRAGMIRQQGQGSFSWLPLGKRVLDKVCQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PT+QSADLW ESGRY+ YGKEMLR+ DR D+ M+YGPT+EE++T+IFR+
Sbjct: 61  QNRAGALEILMPTIQSADLWRESGRYNDYGKEMLRIKDRQDRDMLYGPTNEEMVTEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG++ +YN+MFVS
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDFEGARSAYNRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LADTGE+QVFC +D++   +P  NTDF 
Sbjct: 181 YLRTFTRMGLQAIPMRADTGPIGGDLSHEFIILADTGESQVFCHRDYLSLAVPGANTDFA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   +  IV+ WT PYAAT ++H+E  ++ +PE+ +VSARGIEVGHIF+FG KYS PM A
Sbjct: 241 NDGEIADIVKTWTTPYAATDEMHDEAAWEKVPESDKVSARGIEVGHIFHFGEKYSKPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKDH+   GSYGIG  R+VAA+IE+SHD  GIIWPD+VAPF I LIN+K  D  
Sbjct: 301 KVTGPDGKDHFASGGSYGIGPSRLVAAIIEASHDENGIIWPDAVAPFDIGLINMKVGDAD 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    E++ A  +  G DV +DD  ++ G +FA ADL+G P QVIVG + V+  +VEIK+
Sbjct: 361 CDRVSEELNAAFTAAGKDVLYDDTDQRPGGKFATADLIGLPWQVIVGPRGVAAGEVEIKN 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE + + +     
Sbjct: 421 RRTGERETLPIADAKKRF 438


>gi|319783000|ref|YP_004142476.1| prolyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168888|gb|ADV12426.1| prolyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 442

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 263/438 (60%), Positives = 340/438 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENPR+AEI SH+LMLR GMI Q  +G +SWLPLG++ LD V  IIREE
Sbjct: 1   MRLSRYFLPILKENPREAEIVSHRLMLRAGMIRQQGQGSFSWLPLGKRVLDKVCRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA+E+ +PT+QSADLW ESGRYD YGKEMLR+ DR D+ M+YGPT+EEV+T+I R+
Sbjct: 61  QDRAGALEILMPTIQSADLWRESGRYDDYGKEMLRIKDRQDRDMLYGPTNEEVVTEIVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG++ +YN+MFVS
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDFEGARAAYNRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL++IPMRA++GPIGGDLSHEFI+LADTGE+QV+C +D++   +P  NTDF 
Sbjct: 181 YLRTFTRMGLQAIPMRADTGPIGGDLSHEFIILADTGESQVYCHRDYLALDVPGANTDFA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   +  IV+ WT PYAAT ++H+E  ++ + E+ +VSARGIEVGHIF+FG KYS PM A
Sbjct: 241 NDAEIADIVKTWTTPYAATDEMHDEAAWEKIGESDKVSARGIEVGHIFHFGDKYSKPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKDH+V  GSYGIG  R+VAA+IE+SHD  GIIWP++VAPF I LIN+KA D  
Sbjct: 301 KVTGPDGKDHFVSGGSYGIGPSRLVAAIIEASHDDNGIIWPEAVAPFDIGLINMKAGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   C++++A     G DV +DD  ++ G +FA ADL+G P QVIVG + V+  ++EIK+
Sbjct: 361 CDGVCDELHAAFVAAGKDVLYDDTDQRPGGKFATADLIGLPWQVIVGPRGVAAGEIEIKN 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG RE + + +     
Sbjct: 421 RKTGERETLPIADAKKRF 438


>gi|260430967|ref|ZP_05784938.1| prolyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414795|gb|EEX08054.1| prolyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 446

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 239/440 (54%), Positives = 314/440 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRLMLRAGMIKQAAAGIYSWLPLGFKVLRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +P LQSADLW ESGRYD YG+EMLR+ DR+ + M+Y PT EE++TDIFR 
Sbjct: 61  QIRAGHIPIQMPILQSADLWRESGRYDDYGQEMLRMKDRHGRDMLYTPTAEELVTDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D  +   + D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSAVTDIRLGQRDIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D     +I+E++T+ YA T + H+E LF  +PE +R SARGIEVG IFYFGTKYS PM A
Sbjct: 241 DKAQCQAIMEEFTSLYARTDETHDEALFQQVPEERRRSARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQGPDGKQVPVHMGSHGIGVSRLIGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+KIY  L+ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDKIYKALTALGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E++S E  +   + 
Sbjct: 421 RRTGESEELSPEAAVTRIAE 440


>gi|90417824|ref|ZP_01225736.1| prolyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337496|gb|EAS51147.1| prolyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
          Length = 440

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 260/439 (59%), Positives = 335/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + G+YS+LPLG++ LD V AIIREE
Sbjct: 1   MRLSRYFLPILKETPKEAEIVSHRLMLRAGMIRQQAAGLYSFLPLGKRVLDKVCAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR+GAIE+ +PT+QSADLW ESGRY+ YGKEMLR+ DR+ + ++YGPT+EE++TDIFRS
Sbjct: 61  QNRSGAIELLMPTIQSADLWRESGRYEDYGKEMLRIEDRHGRDLLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++++Y++LP   Y +Q KFRDE+RPRFGVMRSREFLMKDAYSFDL  + SK +Y++MFV+
Sbjct: 121 YVRTYKDLPLNLYHLQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYDNSKIAYDRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R GLK+IPMRA++GPIGG+LSHEFIVLA TGE++VFC +D++D  +P E  DFD
Sbjct: 181 YLRTFERCGLKAIPMRADTGPIGGELSHEFIVLASTGESEVFCHRDYLDLAVPCEGVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  IV+ WT PYAAT ++H    +D L E+ +++ARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DAAGLAEIVKAWTTPYAATDEMHETATWDQLAEDDKLAARGIEVGHIFHFGTKYSEPMKA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKD  V MGSYGIG  R++AA+IE+SHD  GIIWP SVAPF + LIN+K  D  
Sbjct: 301 VVTGPDGKDVPVHMGSYGIGPSRLLAAIIEASHDENGIIWPKSVAPFDVGLINMKPGDAD 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE +Y ++   G DV +DD   + G++FA  DL+G P+QVIVG +     + EIK 
Sbjct: 361 CDAACEDLYRQMQAAGIDVLYDDQDTRAGAKFASMDLIGLPMQVIVGPRGAKAGEAEIKL 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG R+ + L  V+    
Sbjct: 421 RATGERQSLPLSSVLARVQ 439


>gi|307942137|ref|ZP_07657488.1| prolyl-tRNA synthetase [Roseibium sp. TrichSKD4]
 gi|307774423|gb|EFO33633.1| prolyl-tRNA synthetase [Roseibium sp. TrichSKD4]
          Length = 443

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 247/445 (55%), Positives = 331/445 (74%), Gaps = 3/445 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYFLPIL+E P++AEI SH+LMLR GMI Q S GIYSWLP+G + L  +  I+ EE
Sbjct: 1   MRLSKYFLPILKETPKEAEIVSHRLMLRAGMIRQQSAGIYSWLPMGHRVLRKIERIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+++ +PT+QSA+LW ESGRYD+YGKEMLR+ DR+++ +++GPT+EE++TDIFR 
Sbjct: 61  QNRAGAVQLLMPTIQSAELWRESGRYDAYGKEMLRITDRHERDILFGPTNEEMITDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E +  SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDKESAVESYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL +IPM+AE+GPIGGDLSHEFIVLADTGE++V+C  D++    P E+ +FD
Sbjct: 181 YLRTYKRMGLTAIPMKAETGPIGGDLSHEFIVLADTGESEVYCHADYLTKQTPGEDVNFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               LN IV  WT+ YAAT DV ++  F++ +PE+KR+ ARGIEVG  FYFGTKYS PM 
Sbjct: 241 --GDLNPIVNDWTSHYAATEDVVDKAAFEAKVPEDKRIVARGIEVGQTFYFGTKYSEPMG 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G+DGK+  V MGSYG+G  R++ A+IE+SHD  GIIW  SVAPF + LIN+K  D+
Sbjct: 299 AKVAGSDGKEVPVHMGSYGVGVSRLLGALIEASHDDAGIIWHKSVAPFHVGLINLKPGDE 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE +YA+    G +V +DD   + G++FA  DL+G P QV+ G + + D  +E+K
Sbjct: 359 TTDAACEDLYAKFEAAGVEVLYDDTDNRAGAKFASMDLIGLPYQVVAGPRGLKDGVLEVK 418

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
           +R TG +E ++ E  +N      ++
Sbjct: 419 NRATGEKEMLTPEATLNKLVAALTS 443


>gi|126725673|ref|ZP_01741515.1| prolyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
 gi|126704877|gb|EBA03968.1| prolyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
          Length = 470

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 230/445 (51%), Positives = 314/445 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP DA+I SH+LMLR GMI Q S GIYSWLPLG K L N+  I+ EE
Sbjct: 26  MRLSRYFLPVLKENPADAQIVSHRLMLRAGMIKQASAGIYSWLPLGLKVLRNIERIVHEE 85

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q + G I + +PT+QSADLW ESGRYD YG+EMLR++DR+   M+YGPT+EE +TDIFR+
Sbjct: 86  QAKAGHIPVLMPTVQSADLWRESGRYDDYGEEMLRISDRHGHDMLYGPTNEEQITDIFRA 145

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE RPRFGVMR REFLMKD Y+FD+  + + H+YN+  V+
Sbjct: 146 HVHSYKDLPLTLYQIQWKFRDERRPRFGVMRGREFLMKDGYNFDIDYDSAMHAYNRHMVA 205

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GLK+IPMRA+SGPIGG+ +HEF+VLADTGE++VF   D +D        DFD
Sbjct: 206 YLRTYERMGLKAIPMRADSGPIGGEDTHEFLVLADTGESEVFYDSDILDLNFGDRVVDFD 265

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +   +V +WT PYA T + H+E L++ +PE +R S+RGIEVG IFYFGTKYS  M A
Sbjct: 266 DVSACAEVVTEWTTPYARTDETHDEALYNDIPEARRKSSRGIEVGQIFYFGTKYSDSMGA 325

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    +     V MGS+GIG  R++ A+IE+SHD  GIIWP+ V PF   ++N++  D+ 
Sbjct: 326 SVVDGEQNKVPVHMGSHGIGVSRLLGAIIEASHDDNGIIWPEGVTPFHCGIVNLRQGDEA 385

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC  +Y  L+  G +  +DD  E+ G++FA  DL+G P ++ VG + + +  VE+  
Sbjct: 386 TDGACGALYEALTAAGLEPLYDDRNERAGAKFATMDLIGLPWRITVGPRGLKNGVVELTS 445

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R TG  +++S+E  +      + N+
Sbjct: 446 RRTGESQELSIEAAVEAVVKVYENH 470


>gi|315499825|ref|YP_004088628.1| prolyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
 gi|315417837|gb|ADU14477.1| prolyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
          Length = 439

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 243/440 (55%), Positives = 327/440 (74%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y LP+L+ENP +A+I SH+LMLRTGMI Q + GIY+WLPLG + L  +  I+ EE
Sbjct: 1   MRLSRYLLPLLKENPSEAQIVSHRLMLRTGMIRQEAAGIYAWLPLGLRVLRKIEKIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +PTLQ ADLW ESGRYD YG+EMLR+ DR+++ M+YGPT+EE++T+IFR 
Sbjct: 61  MQRAGAVELLMPTLQLADLWRESGRYDDYGQEMLRIKDRHEREMLYGPTNEEMITEIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MF++
Sbjct: 121 TVKSYKDLPMNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEASARKAYNRMFIA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F RLGLK++PMRA++GPIGGDLSHEFI+LA+TGE+ VFC KD +D P P  + D+D
Sbjct: 181 YLNTFSRLGLKAVPMRADTGPIGGDLSHEFIILAETGESAVFCHKDLVDMPAPGADVDWD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L   V+Q T+ YAAT ++H+E  F+++P +K++SARGIEVGHIFYFG KYS PM A
Sbjct: 241 DLQGL---VDQRTSLYAATEEMHDEAAFNAVPADKQLSARGIEVGHIFYFGEKYSAPMGA 297

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              GADG    V MGSYG+G  R++  +IE+SHD  GIIWP+SV PF ++L+N++  D+ 
Sbjct: 298 KVSGADGSQVNVHMGSYGVGVSRLIGGIIEASHDEAGIIWPESVTPFDVALVNLRVGDEA 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACEK Y  L   G DV + D  ++ G++FA  DL+G P Q+I+G K +++ +VEIKH
Sbjct: 358 CDAACEKAYKALKAAGRDVLYHDTDDRPGAKFASMDLIGIPWQLIIGPKGIAEGQVEIKH 417

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG R   + + V+   + 
Sbjct: 418 RATGERHTAAFDAVLEQLTK 437


>gi|329889349|ref|ZP_08267692.1| prolyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568]
 gi|328844650|gb|EGF94214.1| prolyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568]
          Length = 438

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 237/441 (53%), Positives = 321/441 (72%), Gaps = 4/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L  +  I+R+E
Sbjct: 1   MRLSRYFLPILKEAPSDAQIVSHQLMLRAGMIKQEAAGIYAWLPLGLRVLRKIEGIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q + GA+E+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+++ ++YGPT+EE++TDIFR+
Sbjct: 61  QVKAGAVELLMPTLQLADLWRESGRYDAYGPEMLRITDRHERELLYGPTNEEMVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   + IQ KFRDE RPRFGVMR REFLMKDAYSFDL    ++ +Y +MF +
Sbjct: 121 YVKSYKALPLNLFHIQWKFRDERRPRFGVMRGREFLMKDAYSFDLDEASARIAYKRMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F RLGLK++PMRA++GPIGGDLSHEFIVLA+TGE++VFC +  ++   P  N   +
Sbjct: 181 YLNTFARLGLKAVPMRADTGPIGGDLSHEFIVLAETGESEVFCDRKLVEMAAPGHNLSVE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP-ENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +  + +   + TA YAAT ++H+   F++   E  R+SARGIEVGHIFYFGTKYS  M 
Sbjct: 241 QLEGVFN---ERTALYAATEEMHDAAQFETQTAEGDRLSARGIEVGHIFYFGTKYSAAMK 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G +G+D  V MGSYG+G  R++ A+IE+SHD  GIIWPDSVAPF + +IN++A D+
Sbjct: 298 AKVAGPNGQDTEVHMGSYGVGVSRLLGAIIEASHDEGGIIWPDSVAPFDVVVINLRASDE 357

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE   A+L  +G DV +DD  E+ G +FA ADL+G P Q+ +G K ++D  VE+K
Sbjct: 358 AVSAACEDAVAKLEALGKDVLYDDTDERPGGKFATADLIGVPWQLTIGPKGLADGVVELK 417

Query: 420 HRLTGIREDMSLEEVINYASH 440
            R TG ++ +SL+  +   + 
Sbjct: 418 RRATGEKQSLSLDAALELLTK 438


>gi|254488857|ref|ZP_05102062.1| prolyl-tRNA synthetase [Roseobacter sp. GAI101]
 gi|214045726|gb|EEB86364.1| prolyl-tRNA synthetase [Roseobacter sp. GAI101]
          Length = 446

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 234/446 (52%), Positives = 322/446 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRLMLRAGMIKQSAAGIYSWLPLGFKVLRKIENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD+YG EMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPMLMPTLQSADLWKESGRYDAYGPEMLRIKDRQDRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF      +        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSQITELKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+  LF  +P++++ +ARGIEVG IFYFGTKYS PM A
Sbjct: 241 SVDQCQAVLEEFTSRYARTDETHDAALFSEVPQDRQRTARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D+ 
Sbjct: 301 TVQGPDGKPTPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDEE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +Y  ++ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADSACQALYDSITALGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R TG  E+M+ E+ +   +  ++ +R
Sbjct: 421 RRTGESEEMAPEDAVQKIAEIYAKHR 446


>gi|92117720|ref|YP_577449.1| prolyl-tRNA synthetase [Nitrobacter hamburgensis X14]
 gi|123083656|sp|Q1QLA8|SYP_NITHX RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91800614|gb|ABE62989.1| prolyl-tRNA synthetase [Nitrobacter hamburgensis X14]
          Length = 439

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 249/439 (56%), Positives = 329/439 (74%), Gaps = 3/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+E P++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  + AI+REE
Sbjct: 1   MRLSRFFLPILKETPKEAEIVSHRLMLRAGMMRQEAAGIYAWLPLGLRVLKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+ + ++YGPT+EE++T+IFRS
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIQDRHKRELLYGPTNEEMITEIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYN+MFV+
Sbjct: 121 YVRSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEVGARLSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+  KD +D P+P  + D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDKDVLDLPVPGTDVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  IV+QWT  YAAT DVH+   ++  +PE +RV  RGIEVG IFYFGTKYS  M 
Sbjct: 241 --GDLTPIVKQWTTAYAATEDVHDGARYEREVPEERRVHTRGIEVGQIFYFGTKYSESMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +  +  GSYG+G  R+V A+IE+ HD  GI WP++VAPF ++++N+K    
Sbjct: 299 ALVAGPDGVEQPIHGGSYGVGVSRLVGAIIEACHDDAGIKWPEAVAPFTVAILNLKQGAG 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE++Y  LS  G DV +DD  ++ G++FA ADL+G P QV+VG K +++ KVEIK
Sbjct: 359 DTDAACERLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQVMVGPKGLAEGKVEIK 418

Query: 420 HRLTGIREDMSLEEVINYA 438
            R  G RE+++LE+ +   
Sbjct: 419 RRGDGTRENVALEDAVERL 437


>gi|86749715|ref|YP_486211.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
 gi|114152241|sp|Q2IWW0|SYP_RHOP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|86572743|gb|ABD07300.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
          Length = 439

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 248/440 (56%), Positives = 332/440 (75%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR++DR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRISDRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ SYN+MFV+
Sbjct: 121 YVKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAAARKSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+C +D +  P+P E  D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYCDRDVLSLPVPDETVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH+   ++S +PE  R+  RGIEVG IFYFGTKYS  M 
Sbjct: 241 --GDLTPIIKQWTSVYAATEDVHDAVRYESEVPEANRLHTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R+V A+IE+ HD  GIIWP+ VAPF+++++N+K  D 
Sbjct: 299 ANVAGPDGTDAPIHGGSYGVGVSRLVGAIIEACHDDNGIIWPEEVAPFRVAILNLKQGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE++Y  L+  G DV +DD  ++ G++FA ADL+G P QV+VG K ++D K+E+K
Sbjct: 359 ATDAACEQLYKELAAKGVDVLYDDTDQRAGAKFATADLIGIPWQVLVGPKGLADGKIELK 418

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R  G RE+++L E +   +
Sbjct: 419 RRSDGSRENIALAETVARLA 438


>gi|118138193|pdb|2I4L|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase
 gi|118138194|pdb|2I4L|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase
 gi|118138195|pdb|2I4L|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase
 gi|118138196|pdb|2I4M|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Proams
 gi|118138197|pdb|2I4M|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Proams
 gi|118138198|pdb|2I4M|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Proams
 gi|118138199|pdb|2I4N|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Cysams
 gi|118138200|pdb|2I4N|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Cysams
 gi|118138201|pdb|2I4N|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Cysams
 gi|118138202|pdb|2I4O|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Atp
 gi|118138203|pdb|2I4O|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Atp
 gi|118138204|pdb|2I4O|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
           Complex With Atp
          Length = 458

 Score =  408 bits (1048), Expect = e-112,   Method: Composition-based stats.
 Identities = 249/440 (56%), Positives = 335/440 (76%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 21  MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 80

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 81  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 140

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYNKMFV+
Sbjct: 141 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVA 200

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+  +D ++ P+P EN D+D
Sbjct: 201 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYD 260

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH    ++S +PE  R++ RGIEVG IFYFGTKYS  M 
Sbjct: 261 --GDLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMK 318

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R++ A+IE+ HD  GIIWP++VAPF+++++N+K  D 
Sbjct: 319 ANVTGPDGTDAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDA 378

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               AC+++Y  LS  G DV +DD  ++ G++FA ADL+G P Q+ VG + +++ KVE+K
Sbjct: 379 ATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELK 438

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R  G RE+++L +V+   +
Sbjct: 439 RRSDGARENLALADVVARLT 458


>gi|316933915|ref|YP_004108897.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
 gi|315601629|gb|ADU44164.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
          Length = 439

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 252/441 (57%), Positives = 335/441 (75%), Gaps = 3/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYNKMFV+
Sbjct: 121 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLADTGE+ VF  +D ++ P+P EN D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLADTGESGVFIDRDVLNLPVPDENVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH    ++S +PE  R++ RGIEVG IFYFGTKYS  M 
Sbjct: 241 --ADLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R+V A+IE+ HD  GIIWP++VAPF+++++N+K  D 
Sbjct: 299 ANVAGPDGTDAPIHGGSYGVGVSRLVGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               AC+++Y  LS  G DV +DD  ++ G++FA ADL+G P QV VG + +++ KVE+K
Sbjct: 359 ATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQVHVGPRGLAEGKVELK 418

Query: 420 HRLTGIREDMSLEEVINYASH 440
            R  G RE+++L +++   + 
Sbjct: 419 RRSDGSRENLALADLVARLTQ 439


>gi|85717006|ref|ZP_01047968.1| prolyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
 gi|85696130|gb|EAQ34026.1| prolyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
          Length = 439

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 253/440 (57%), Positives = 329/440 (74%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L  + AI+REE
Sbjct: 1   MRLSRFFLPILKETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+ + ++YGPT+EE++T+IFR 
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIQDRHKRELLYGPTNEEMITEIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYNKMFV+
Sbjct: 121 YIRSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEAGARRSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+  KD +D P+P  + D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDKDVLDLPVPGTDVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHN-EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  IV+QWT  YAAT DVH+  +    +PE +RV  RGIEVG IFYFGTKYS  M 
Sbjct: 241 --GDLTPIVKQWTVAYAATEDVHDGPRYEREVPEERRVHTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
               G DG +  +  GSYG+G  R+V A+IE+ HD  GI WPD+VAPF+++++N+K    
Sbjct: 299 TLVTGPDGVEQPIHGGSYGVGVSRLVGAIIEACHDEGGIKWPDAVAPFRVAILNLKQGAG 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE+IY  LS  G DV +DD  ++ G++FA ADL+G P QV+VG K +++ KVEIK
Sbjct: 359 DTDAACERIYRELSAKGIDVLYDDTDQRAGAKFATADLIGIPWQVMVGPKGLAEGKVEIK 418

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R  G RE+++LE+V+   +
Sbjct: 419 RREDGSRENVALEDVVARLT 438


>gi|240850599|ref|YP_002971999.1| prolyl-tRNA synthetase [Bartonella grahamii as4aup]
 gi|240267722|gb|ACS51310.1| prolyl-tRNA synthetase [Bartonella grahamii as4aup]
          Length = 441

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 265/439 (60%), Positives = 343/439 (78%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP++AEI SH+LMLR GMI Q + GIYSWLPLG+K LD V  IIREE
Sbjct: 1   MRLSQYFLPLLKENPKEAEIVSHRLMLRAGMIRQQTSGIYSWLPLGKKVLDKVCRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GAIE+ +PT+QSADLW ESGRYD YG EMLR+ DR  + ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGAIEILMPTIQSADLWRESGRYDDYGLEMLRIKDRQKRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR+REFLMKDAYSFDL  EGSK SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEIRPRFGVMRAREFLMKDAYSFDLDYEGSKTSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGLK+IPMRA++GPIGG+LSHEFI+LA+TGE+ +FC+K F++  +P  + DF 
Sbjct: 181 YLRTFSRLGLKAIPMRADTGPIGGELSHEFIILAETGESAIFCNKQFLELTVPDSSIDFS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L+ IV+QWT+ YAAT ++HNE+ +  + ++ R+SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKAVLDDIVKQWTSFYAATEEMHNEEEWAKVSDHNRLSARGIEVGHIFHFGTKYSAPMEA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP S+APF   +IN+K+ D+ 
Sbjct: 301 KVMGQDGKEHVVSMGSYGIGPSRLVAAAIEASHDENGIIWPKSMAPFDFGIINMKSDDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE +Y  L + G D   DD  E+ GS+FA  DL+G P Q+IVG   ++ ++VEIK 
Sbjct: 361 CTKACEFLYQGLKEAGFDPLLDDRNERPGSKFATMDLIGLPTQIIVGPNSIAQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG+++ + +E+V++  S
Sbjct: 421 RKTGVKKSLKVEDVLSQLS 439


>gi|192291648|ref|YP_001992253.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
 gi|226701325|sp|B3Q7L2|SYP_RHOPT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|192285397|gb|ACF01778.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
          Length = 438

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 249/440 (56%), Positives = 335/440 (76%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYNKMFV+
Sbjct: 121 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+  +D ++ P+P EN D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH    ++S +PE  R++ RGIEVG IFYFGTKYS  M 
Sbjct: 241 --GDLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R++ A+IE+ HD  GIIWP++VAPF+++++N+K  D 
Sbjct: 299 ANVTGPDGTDAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               AC+++Y  LS  G DV +DD  ++ G++FA ADL+G P Q+ VG + +++ KVE+K
Sbjct: 359 ATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELK 418

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R  G RE+++L +V+   +
Sbjct: 419 RRSDGSRENLALADVVARLT 438


>gi|188580267|ref|YP_001923712.1| prolyl-tRNA synthetase [Methylobacterium populi BJ001]
 gi|226701310|sp|B1ZA28|SYP_METPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|179343765|gb|ACB79177.1| prolyl-tRNA synthetase [Methylobacterium populi BJ001]
          Length = 441

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 254/439 (57%), Positives = 334/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L+ V  +IR E
Sbjct: 1   MRLSRYFLPILRETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLNKVCDVIRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA+E+ +PT+Q+ADLW ESGRY++YGKEMLRL DR+++ ++YGPT EEV+T+IFR+
Sbjct: 61  QDRAGAVEILMPTIQAADLWRESGRYEAYGKEMLRLKDRHERELLYGPTAEEVVTEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SY++LP   YQI  KFRDE+RPRFG MRSREFLMKD YSFDL    ++HSYNK+FVS
Sbjct: 121 SARSYKDLPKNLYQISWKFRDEVRPRFGTMRSREFLMKDGYSFDLDQAAARHSYNKVFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F  LGL++IPMRA++GPIGGDLSHEFI+LA TGE++VFC + ++D P+P  + DFD
Sbjct: 181 YLRTFETLGLRAIPMRADTGPIGGDLSHEFIILAKTGESEVFCDRAYLDMPVPPPSVDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L  +V+ WT+ YAAT ++H+E +F  +PE  R+SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DVAGLQGVVDSWTSHYAATDEMHDEAVFAEVPEASRLSARGIEVGHIFYFGTKYSTPMKA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG++  V MGSYGIG  R+VAA IE+SHD  GIIWPD++APF ++LIN+K  D  
Sbjct: 301 VVTGPDGQERPVHMGSYGIGPSRLVAATIEASHDEAGIIWPDAIAPFDVALINLKVGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  AC +I + L   G  V +DD  E+ G++FA ADL+G P QVIVG K +++ K+E+K 
Sbjct: 361 CDAACAEIQSALETAGLSVLYDDRDERPGAKFATADLIGLPWQVIVGPKGLAEGKIELKR 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R +G RE +   ++     
Sbjct: 421 RASGERETLDPVDLPARIR 439


>gi|39935993|ref|NP_948269.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
 gi|81829575|sp|Q6N5P6|SYP_RHOPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|39649847|emb|CAE28369.1| proline-tRNA ligase [Rhodopseudomonas palustris CGA009]
          Length = 438

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 249/440 (56%), Positives = 335/440 (76%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYNKMFV+
Sbjct: 121 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+  +D ++ P+P EN D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH    ++S +PE  R++ RGIEVG IFYFGTKYS  M 
Sbjct: 241 --GDLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  +  GSYG+G  R++ A+IE+ HD  GIIWP++VAPF+++++N+K  D 
Sbjct: 299 ANVTGPDGTDAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               AC+++Y  LS  G DV +DD  ++ G++FA ADL+G P Q+ VG + +++ KVE+K
Sbjct: 359 ATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELK 418

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R  G RE+++L +V+   +
Sbjct: 419 RRSDGARENLALADVVARLT 438


>gi|90423927|ref|YP_532297.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
 gi|114152242|sp|Q215F8|SYP_RHOPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|90105941|gb|ABD87978.1| prolyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
          Length = 439

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 244/440 (55%), Positives = 326/440 (74%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+E P++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRFFLPILKETPKEAEIVSHRLMLRAGMMRQEAAGIYAWLPLGLRVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE  +PTLQ ADLW ESGRYD+YG EMLR+ DR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGAIECLMPTLQLADLWRESGRYDAYGPEMLRITDRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY+NLP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ SYN+MFV+
Sbjct: 121 YVRSYKNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEAAARKSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ VFC  D ++ P+P ++ D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVFCDSDVLNLPVPGDDVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH+ + F+  +P +K+++ RGIEVG IFYFGTKYS  M 
Sbjct: 241 --GDLTPIIKQWTSVYAATEDVHDAERFEREVPADKKLNTRGIEVGQIFYFGTKYSDKMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG D  V  GSYG+G  R+V A+IE+ HD  GI WP+ VAPF+ +++N+K    
Sbjct: 299 ALVAGPDGVDVPVHGGSYGVGVSRLVGAIIEACHDENGIKWPEEVAPFRAAILNLKQGSA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE +Y  LS  G DV +DD  ++ G +FA ADL+G P Q++VG K +++ KVE+K
Sbjct: 359 DTDAACEALYKELSAKGVDVLYDDTDQRAGGKFATADLIGIPWQILVGPKGLAEGKVELK 418

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R  G RE+++  E +   +
Sbjct: 419 RRADGSRENVTPAEAVARLT 438


>gi|75676056|ref|YP_318477.1| prolyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
 gi|114152223|sp|Q3SRG6|SYP_NITWN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|74420926|gb|ABA05125.1| Prolyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
          Length = 439

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 252/439 (57%), Positives = 326/439 (74%), Gaps = 3/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+E P++AEI SH+LMLR GMI Q + GIY+WLPLG + L  + AI+REE
Sbjct: 1   MRLSRFFLPILKETPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGLRVLKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+ + ++YGPT+EE++T+IFR 
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIQDRHKRELLYGPTNEEMITEIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+   G++ SYN+MFV+
Sbjct: 121 YIRSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEAGARRSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+  KD +D PIP    D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDKDVLDLPIPGTEVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHN-EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  IV QWT  YAAT DVH+  +    +PE +RV  RGIEVG IFYFGTKYS  M 
Sbjct: 241 --GDLTPIVRQWTTAYAATEDVHDGPRYEREVPEERRVHTRGIEVGQIFYFGTKYSESMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +  +  GSYG+G  R+V A+IE+ HD  GI WP++VAPF ++++N+K    
Sbjct: 299 ALVTGTDGVEQPIHGGSYGVGVSRLVGAIIEACHDEAGIKWPEAVAPFTVAILNLKQGAS 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +ACE+IY  LS  G DV +DD  ++ G++FA ADL+G P QV+VG K +++ KVEIK
Sbjct: 359 DTDEACERIYRELSARGVDVLYDDTDQRAGAKFATADLIGSPWQVMVGPKGLAEGKVEIK 418

Query: 420 HRLTGIREDMSLEEVINYA 438
            R  G RE+++LE+ +   
Sbjct: 419 RRGDGSRENVALEDAVARL 437


>gi|56696018|ref|YP_166372.1| prolyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
 gi|81820109|sp|Q5LUD3|SYP_SILPO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56677755|gb|AAV94421.1| prolyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
          Length = 464

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 238/449 (53%), Positives = 322/449 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q   GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPAEAQIVSHRLMLRAGMIKQAQAGIYSWLPLGFKVLRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD YG+EMLR+ DR+ + M++GPT+EE++TDIFR 
Sbjct: 61  QIRAGHIPMLMPTLQSADLWRESGRYDDYGQEMLRITDRHGRDMLFGPTNEELITDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+R + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF      D  +     D+D
Sbjct: 181 YIRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSKVTDIRLGEREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E +F+ +PE +R SARGIEVG IFYFGTKYS PM A
Sbjct: 241 SVDQCRAVMEEFTSLYARTDETHDEAVFNQIPEERRRSARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQGPDGKPVPVHMGSHGIGVSRLIGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDGE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+++YA LS +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDQLYAALSAIGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R TG   ++S EE +   +  ++ + P L
Sbjct: 421 RKTGESVELSPEEAVKKVADIYAPHHPHL 449


>gi|114764030|ref|ZP_01443271.1| prolyl-tRNA synthetase [Pelagibaca bermudensis HTCC2601]
 gi|114543622|gb|EAU46636.1| prolyl-tRNA synthetase [Roseovarius sp. HTCC2601]
          Length = 445

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 231/440 (52%), Positives = 311/440 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+ MLR GMI Q S GIYSWLPLG K L  +  II EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIVSHRYMLRAGMIKQASAGIYSWLPLGYKVLRKIENIIHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PT+QSADLW ESGRYD+YG EMLR+ DR+D+ M+Y PT EE++TDIFR+
Sbjct: 61  QARAGHIPMLMPTIQSADLWRESGRYDAYGAEMLRITDRHDRDMLYTPTAEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SYR+LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 NVSSYRDLPLTMYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF   +  +        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSEITELKFGDRAIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E +F+ +PE +R +ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVEQCQAVLEEFTSRYARTDETHDEAVFNQVPEARRRTARGIEVGQIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T    DG    V MGS+GIG  R++ A+IE+SHD +GIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVSDKDGNQVPVHMGSHGIGVSRLLGAIIEASHDDRGIIWPEGVTPFHCGIVNLKTGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+KI+A L  +G D  +DD  E+ G++FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDKIHAALIALGLDPLYDDTNERAGAKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E++  E  +   + 
Sbjct: 421 RRTGESEELPPEAAVAKIAE 440


>gi|89070126|ref|ZP_01157455.1| prolyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
 gi|89044243|gb|EAR50389.1| prolyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
          Length = 466

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 236/443 (53%), Positives = 320/443 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+IASH+LMLR GMI Q   GIYSWLPLG + L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIASHRLMLRAGMIKQAGAGIYSWLPLGYRVLKKIERIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G   + +PTLQ+A+LW ESGRYD+YG EMLR+ DR+D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHHPVLMPTLQTAELWRESGRYDAYGPEMLRIRDRHDRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVASYKDLPLTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF   +  D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSEITDLRFGEREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D     +++ ++T+ YA T + H+E LF  +PE +R SARGIEVG IFYFGTKYS PM A
Sbjct: 241 DRAQCEAVMAEFTSRYARTDETHDEALFAEVPEARRRSARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R+V A+IE++HD KGI+WP+ V PF + L+N+K  D  
Sbjct: 301 TVQGPDGKPVPVHMGSHGIGVSRLVGALIEANHDDKGIVWPEGVTPFHVGLVNLKTGDGD 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+KIY +L+  G +V +DD  E+ G++FA  DL+G P +V VG + + +  VE+  
Sbjct: 361 ADAACQKIYDQLTACGLEVLYDDRDERAGAKFATMDLIGLPWRVTVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG  E+++ + + +     ++
Sbjct: 421 RRTGDSEEIAPDALTDRLCEIYA 443


>gi|254466898|ref|ZP_05080309.1| prolyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
 gi|206687806|gb|EDZ48288.1| prolyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
          Length = 451

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 233/446 (52%), Positives = 316/446 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q S GIYSWLPLG K L  + +I+ +E
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRLMLRAGMIKQSSAGIYSWLPLGFKVLKKIESIVHDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M + T+Q ADLW ESGRYD YG+EMLR+ DR+D+ M++GPT+EE++TDIFR+
Sbjct: 61  QIRAGHIPMLMATMQPADLWRESGRYDDYGQEMLRIKDRHDRDMLFGPTNEEMITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQ+Q KFRDE+RPRFGVMR REF MKD Y+FDL+ E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTMYQVQWKFRDEIRPRFGVMRGREFYMKDGYNFDLSKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF      D      + D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSAVTDLTFGDRDIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVEQCQAVLEEFTSRYARTDETHDEALFNQIPEERRRVARGIEVGQIFYFGTKYSESMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD  GIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQGPDGKPVPVHMGSHGIGVSRLLGAIIEASHDDNGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC ++YA LS  G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACNQLYAALSAAGLDPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R TG  E++S EE +      +  +R
Sbjct: 421 RRTGESEELSPEEAVKKVVSIYEKHR 446


>gi|260428562|ref|ZP_05782541.1| prolyl-tRNA synthetase [Citreicella sp. SE45]
 gi|260423054|gb|EEX16305.1| prolyl-tRNA synthetase [Citreicella sp. SE45]
          Length = 447

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 234/440 (53%), Positives = 311/440 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+ MLR GMI Q S GIYSWLP+G K L  +  II EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIVSHRYMLRAGMIKQASAGIYSWLPMGFKVLRKIENIIHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PT+QSA+LW ESGRYD+YG EMLR+ DR+D+ M++ PT EE++TDIFR+
Sbjct: 61  QQRAGHIPMLMPTIQSAELWRESGRYDAYGAEMLRITDRHDREMLFTPTAEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SYR+LP T YQIQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 NVSSYRDLPLTMYQIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF      D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSQITDLKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +++E++T+ YA T + H+E +F+ +PE +R  ARGIEVG IFYFGTKYS P+ A
Sbjct: 241 SREQCQAVLEEFTSRYARTDETHDEAVFNQVPEERRRVARGIEVGQIFYFGTKYSEPLGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T   ADG    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVADADGNQVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKTGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACEKI+A L  +G D  +DD  E+ G++FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEKIHAALIALGLDPLYDDTTERAGAKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E+M  E  +   + 
Sbjct: 421 RRTGESEEMPPEAAVAKIAE 440


>gi|99081693|ref|YP_613847.1| prolyl-tRNA synthetase [Ruegeria sp. TM1040]
 gi|122984229|sp|Q1GFI1|SYP_SILST RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|99037973|gb|ABF64585.1| prolyl-tRNA synthetase [Ruegeria sp. TM1040]
          Length = 451

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 228/445 (51%), Positives = 322/445 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A++ SH+ MLR GMI Q + GIYSWLPLG + L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPSEAQVVSHRYMLRAGMIKQSAAGIYSWLPLGYRVLKKIEGIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PT+QSADLW ESGRYD+YG+EMLR+ DR+D+ M++ PT EE++TDIFR+
Sbjct: 61  QMRAGHIPMLMPTIQSADLWRESGRYDAYGEEMLRIRDRHDRDMLFTPTAEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  V+
Sbjct: 121 NVSSYKDLPLTMYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF   +  D    +   D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSEITDLTFGAREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++    +++E++T+ YA T + H+E LF+++PE +R  ARGIEVG IFYFGTKYS  + A
Sbjct: 241 NVEQCQAVLEEFTSRYARTDETHDEALFNAVPEERRRVARGIEVGQIFYFGTKYSEALGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T + ADG+   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQTADGQSVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE++YA L+ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEQLYAALTAIGLEPLYDDRKERAGGKFASMDLIGLPWRITVGPRGLKNGVVEVTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R TG  E+MS E+ +   +  ++N+
Sbjct: 421 RRTGESEEMSPEDAVKKIAAIYANH 445


>gi|254294083|ref|YP_003060106.1| prolyl-tRNA synthetase [Hirschia baltica ATCC 49814]
 gi|254042614|gb|ACT59409.1| prolyl-tRNA synthetase [Hirschia baltica ATCC 49814]
          Length = 441

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 237/440 (53%), Positives = 328/440 (74%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK+FLP+L+E P +A+I SH+LMLR GM+ Q   GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSKFFLPVLKETPAEAKIISHQLMLRAGMVKQTGSGIYTWLPLGLRVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PT+Q ADLW ESGRYD+YGKEMLR+ DR+D+ M++GPT+EEV+TDIFRS
Sbjct: 61  QNRAGAIELLMPTIQPADLWKESGRYDAYGKEMLRITDRHDREMLFGPTNEEVITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+    ++ SY KMF +
Sbjct: 121 YVKSYKQLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDVNEVEARKSYYKMFCA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F R+GLK++PMRA++GPIGGDLSHEFI+LA+TGE++VFC  + ++ P P  + DFD
Sbjct: 181 YLNTFSRMGLKAVPMRADTGPIGGDLSHEFIILAETGESEVFCDAELVNMPPPGLDLDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             +      E+ T  YAAT ++H++  F+S +PE +RVSARGIEVGHIF FGTKYS PM 
Sbjct: 241 SDLLGEF--EKRTQYYAATEEMHDQTKFESEVPEERRVSARGIEVGHIFNFGTKYSEPMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A     +GK+  V MGSYG+G  R++ A+IE+ HD KG+IWP+ VAPFK +++N++  D+
Sbjct: 299 AKVMTPEGKEAPVHMGSYGVGVSRLLGAIIEACHDDKGVIWPEEVAPFKSAVVNLRQGDE 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            C  ACE +YA+L   G D  +DD  ++ G++ +  +L+G P  +++G + + +  VE+K
Sbjct: 359 ACDKACEDVYAKLRATGLDPMYDDRDDRPGAKLSTLELIGIPKAIVIGPRGLKNGVVEVK 418

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R++G+ E+MSL+  +N  +
Sbjct: 419 DRISGVTEEMSLDAALNKLT 438


>gi|163868357|ref|YP_001609566.1| prolyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
 gi|189083488|sp|A9IUL1|SYP_BART1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|161018013|emb|CAK01571.1| Prolyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
          Length = 441

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 267/439 (60%), Positives = 338/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP++AEI SH+ MLR GMI Q + GIYSWLPLG+K LD V  IIREE
Sbjct: 1   MRLSQYFLPLLKENPKEAEIVSHRFMLRAGMIRQQTSGIYSWLPLGKKVLDKVCKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GAIE+ +PT+QSADLW ESGRYD YG EMLR+ DR  + ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGAIEILMPTIQSADLWRESGRYDDYGLEMLRIKDRQKRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR+REFLMKDAYSFDL  EGSK SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEIRPRFGVMRAREFLMKDAYSFDLDYEGSKTSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGLK+IPMRA++GPIGG LSHEFI+LA+TGE+ +FC K F++  +P+ + DF 
Sbjct: 181 YLRTFSRLGLKAIPMRADTGPIGGKLSHEFIILAETGESAIFCDKQFLELSVPNSSIDFS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L+  V+QWT+ YAAT ++HNE+ +  L E  R+SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKAVLDDTVKQWTSFYAATEEMHNEEEWARLSEENRLSARGIEVGHIFHFGTKYSAPMEA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+VAA IE+SHD KGIIWP S+APF   +IN+K  D+ 
Sbjct: 301 KVMGQDGKEHVVSMGSYGIGPSRLVAAAIEASHDEKGIIWPKSMAPFDFGIINMKPDDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE +Y  L   G D F DD  E+ GS+FA  DL+G P Q+IVG   ++ ++VEIK 
Sbjct: 361 CTQACEFLYQGLKDAGFDPFLDDRNERPGSKFATMDLIGLPTQIIVGPNSIAHNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG ++ + +E+V++  S
Sbjct: 421 RKTGAKKSLKVEDVLSQLS 439


>gi|209885076|ref|YP_002288933.1| prolyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
 gi|226701315|sp|B6JH58|SYP_OLICO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|209873272|gb|ACI93068.1| prolyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
          Length = 441

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 256/439 (58%), Positives = 330/439 (75%), Gaps = 3/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++YFLPIL+E P++AEIASH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLTRYFLPILKETPKEAEIASHRLMLRAGMLRQEAAGIYAWLPLGFRVLKKIERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ADR+ + ++YGPT+EE++T+IFRS
Sbjct: 61  QNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYRNLP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL    ++ SYNKMFV+
Sbjct: 121 YVKSYRNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLDEAAARLSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ VFC+KD +D P+P E+ D+D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVFCNKDVLDLPVPGEDVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT  YAAT DVH+   +++ +P  KRV+ RGIEVG IFYFGTKYS  M 
Sbjct: 241 S--DLTPIIKQWTELYAATEDVHDAARYETEVPAEKRVNTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +  V  GSYG+G  R+V A+IE+ HD  GI WP++VAPF ++++N+K    
Sbjct: 299 ALVVGPDGVEKPVHSGSYGVGVSRLVGAIIEACHDENGIKWPEAVAPFTVAILNLKQGAS 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACEK+Y  L+  G DV +DD  ++ G +FA ADL+G P Q+++G K +++ KVEIK
Sbjct: 359 DTDAACEKLYRALTANGVDVLYDDTDQRPGGKFATADLIGIPWQILIGPKGLAEGKVEIK 418

Query: 420 HRLTGIREDMSLEEVINYA 438
            R  G RE MS E+ +   
Sbjct: 419 CRADGSRELMSPEDALARF 437


>gi|49474193|ref|YP_032235.1| prolyl-tRNA synthetase [Bartonella quintana str. Toulouse]
 gi|81827622|sp|Q6FZX5|SYP_BARQU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|49239697|emb|CAF26072.1| Prolyl-tRNA synthetase [Bartonella quintana str. Toulouse]
          Length = 441

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 267/438 (60%), Positives = 341/438 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP++AEI SH+LMLR GMI Q + GIYSWLPLG+K LD V  IIREE
Sbjct: 1   MRLSQYFLPLLKENPKEAEIISHRLMLRAGMIRQQTSGIYSWLPLGKKVLDKVCKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PT+QSADLW ESGRYD YG EMLR+ DR  + ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGAVEILMPTVQSADLWRESGRYDDYGLEMLRIKDRQKRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EGSK SYN+MFV+
Sbjct: 121 YVHSYKDLPLNLYHIQWKFRDEIRPRFGVMRSREFLMKDAYSFDLDYEGSKTSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F  LGLK+IPMRA++GPIGG+LSHEFI+LA+TGE+ +FC K F +  +P  + DF 
Sbjct: 181 YLRTFSCLGLKAIPMRADTGPIGGELSHEFIILAETGESAIFCDKKFFELTVPHSSIDFS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L +IV+QWT+ YAAT ++HNE+ +  + +N R+SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKAVLANIVKQWTSFYAATEEMHNEEEWAKVSDNDRLSARGIEVGHIFHFGTKYSAPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+VAAVIE+SHD  GIIWP S+APF   +IN+K +D+ 
Sbjct: 301 KVMGQDGKEHLVSMGSYGIGPSRLVAAVIEASHDENGIIWPKSIAPFDFGIINMKPNDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE +Y+ L + G D   DD  E+ GS+FA  DL+G P Q+IVG K ++ ++VEIK 
Sbjct: 361 CTRACETLYSGLMQAGFDPLLDDRNERPGSKFATMDLIGLPTQIIVGPKSIAQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG+++ +++E V+N  
Sbjct: 421 RKTGVKKSLTVENVLNQF 438


>gi|259416086|ref|ZP_05740006.1| prolyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
 gi|259347525|gb|EEW59302.1| prolyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
          Length = 451

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 227/445 (51%), Positives = 321/445 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A++ SH+ MLR GMI Q + GIYSWLPLG + L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPSEAQVVSHRYMLRAGMIKQSAAGIYSWLPLGYRVLKKIEGIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PT+QSADLW ESGRYD+YG+EMLR+ DR+D+ M++ PT EE++TDIFRS
Sbjct: 61  QMRAGHIPMLMPTIQSADLWRESGRYDAYGEEMLRIRDRHDRDMLFTPTAEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  V+
Sbjct: 121 NVSSYKDLPLTMYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF   +  D    +   D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSEITDLSFGAREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E LF+++PE++R  ARGIEVG IFYFGTKYS  + A
Sbjct: 241 SVEQCQAVLEEFTSRYARTDETHDEALFNAVPEDRRRVARGIEVGQIFYFGTKYSEALGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T + A+G    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQTAEGDSVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE++YA L+ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEQLYAALTAIGLEPLYDDRKERAGGKFASMDLIGLPWRITVGPRGLKNGVVEVTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R +G  E+MS E+ +   +  ++N+
Sbjct: 421 RRSGESEEMSPEDAVKKIAAIYANH 445


>gi|83592911|ref|YP_426663.1| prolyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
 gi|114152243|sp|Q2RU19|SYP_RHORT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|83575825|gb|ABC22376.1| Prolyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
          Length = 435

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 258/438 (58%), Positives = 319/438 (72%), Gaps = 5/438 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ LP L+E P +AEI SH+LMLR GMI QH+ GIY+WLPLG + L  +  ++REE
Sbjct: 1   MRLSRFLLPTLKETPSEAEIVSHRLMLRAGMIRQHASGIYNWLPLGLRVLRKIEQVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+ TGA E+ +PT+QSADLW ESGRYD YGKEMLR+ DR+++ M+YGPTHEEV TD+FR 
Sbjct: 61  QDATGAQEILMPTIQSADLWRESGRYDDYGKEMLRIVDRHERDMLYGPTHEEVATDVFRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYR LP   YQIQ KFRDE+RPRFGVMR REFLMKD YSFDLT EG++HSYNKMFV+
Sbjct: 121 NVKSYRALPQNLYQIQWKFRDEVRPRFGVMRGREFLMKDNYSFDLTYEGARHSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLGLK+IPM A++GPIGG LSHEFI+LADTGE+ VFC +D +D P P EN D+D
Sbjct: 181 YLRTFARLGLKAIPMAADTGPIGGKLSHEFIILADTGESAVFCHRDLLDKPAP-ENVDYD 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L  +V+ WT+ YAAT ++H       +PE   VSARGIEVGHIF+FGTKYS PM A
Sbjct: 240 S--DLQPLVDSWTSLYAATDEMHRPD--HGVPEGDLVSARGIEVGHIFHFGTKYSAPMGA 295

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T    DG    V MGSYGIG  R+VA +IE+SHD  GIIWPD VAPF I +IN+K  D  
Sbjct: 296 TVTAPDGSSQAVFMGSYGIGVSRLVAGIIEASHDDNGIIWPDGVAPFDIGVINLKVGDAA 355

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C  +Y RL   G DV +DD  ++ G++FA  DL+G P QVI G K V+   VE+K 
Sbjct: 356 TDGVCADLYGRLRAAGKDVLFDDTDDRAGAKFATMDLIGLPWQVIAGPKGVAKGMVELKE 415

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG R ++S++  +   
Sbjct: 416 RATGERHELSIDSALAKL 433


>gi|84501591|ref|ZP_00999763.1| prolyl-tRNA synthetase [Oceanicola batsensis HTCC2597]
 gi|84390212|gb|EAQ02771.1| prolyl-tRNA synthetase [Oceanicola batsensis HTCC2597]
          Length = 445

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 233/443 (52%), Positives = 320/443 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P DA+I SH+ MLR GMI Q S GIYSWLPLG + L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPADAQIVSHRYMLRAGMIKQASAGIYSWLPLGYRVLRRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQSADLW ESGRYD+YG EMLR+ DR+D+ M++GPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPLLMPTLQSADLWRESGRYDAYGPEMLRIRDRHDRDMLFGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 YVRSYKDLPMTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF   +  D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSEITDLKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E++F+ +PE++R  ARGIEVG IFYFGTKYS PM A
Sbjct: 241 SVEQCQAVLEEFTSRYARTDETHDEEVFNRIPEDRRRVARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVQGPDGKQVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +Y   + +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACQALYDGFTALGLDPLYDDRDERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG  E++  EE +   +  ++
Sbjct: 421 RRTGESEELPPEEAVRRVAAIYA 443


>gi|254441019|ref|ZP_05054512.1| prolyl-tRNA synthetase [Octadecabacter antarcticus 307]
 gi|198251097|gb|EDY75412.1| prolyl-tRNA synthetase [Octadecabacter antarcticus 307]
          Length = 453

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 236/445 (53%), Positives = 314/445 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E+PRDA I SH+ MLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKESPRDATIVSHQYMLRAGMIKQSSAGIYSWLPLGFKVLKRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PT+QSADLW ESGRYD YG EMLR+ DRN   ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGHIAMLMPTIQSADLWRESGRYDDYGDEMLRITDRNKNDLLYGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY+ LP T Y IQ KFRDE RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKALPLTLYHIQWKFRDERRPRFGVMRGREFYMKDGYTFDLTKEDAMHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D      + D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDAAVTDLSFGDRDIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+     ++E++TA YA T + H++ LFD++P +++ +ARGIEVG IFYFGTKYS  M A
Sbjct: 241 DVTQCAEVMEEFTAKYARTDETHDQALFDAIPADRQRTARGIEVGQIFYFGTKYSDAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVQGPDGKPTPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDAD 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +YA ++ +G +  +DD  E+ GS+F   D++G P ++ VG + + +  VE+  
Sbjct: 361 ADAACQSLYAAVAALGLEALYDDRDERAGSKFGTMDMIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R TG  E+M  E+ I      +  +
Sbjct: 421 RKTGESEEMPPEQAIAKIGEIYRAH 445


>gi|159043296|ref|YP_001532090.1| prolyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
 gi|189083497|sp|A8LQU6|SYP_DINSH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157911056|gb|ABV92489.1| prolyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
          Length = 445

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 234/443 (52%), Positives = 309/443 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+LMLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIVSHRLMLRAGMIKQASAGIYSWLPLGYKVLRRIEEIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPMLMPTLQSADLWRESGRYDDYGQEMLRITDRHGRDMLYGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 NVGSYKDLPLTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEAALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF   +  D        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDAEITDLSFGDRQIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+    +++E++T+ YA T + H+   F  +PE +R SARGIEVG IFYFGTKYS  M A
Sbjct: 241 DVGQCQAVLEEFTSRYARTDETHDPDAFAKVPEARRRSARGIEVGQIFYFGTKYSDAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T    D     V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVIDKDQNQVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  L+K G +  +DD  E+ G +FA  DL+G P ++ VG + +    VE+  
Sbjct: 361 ADAACEGLYDALTKAGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKAGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG  E++S E  +     R++
Sbjct: 421 RKTGESEELSPEAAVAKVVARYA 443


>gi|329850610|ref|ZP_08265455.1| prolyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
 gi|328840925|gb|EGF90496.1| prolyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
          Length = 443

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 245/438 (55%), Positives = 330/438 (75%), Gaps = 4/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLP+L+ENP +A+I SH+LMLRTGMI Q + GIY+WLPLG K L  V  I+ EE
Sbjct: 1   MRLSRFFLPLLKENPAEAQIVSHRLMLRTGMIRQQAAGIYAWLPLGLKVLRKVERIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G+I++ +PTLQ ADLW ESGRY+ YG+EMLR+ DR+D+ ++YGPT EE +T++FR+
Sbjct: 61  MARAGSIQLLMPTLQLADLWRESGRYEDYGQEMLRIKDRHDRDLLYGPTAEEAVTEVFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQI  KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MF++
Sbjct: 121 SVKSYKDLPLNLYQISWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEASARKAYNRMFIA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F R+GLK++PMRA++GPIGGDLSHEFI+LADTGE+ VFC KD +D P P  + D++
Sbjct: 181 YLNTFSRMGLKAVPMRADTGPIGGDLSHEFIILADTGESAVFCHKDLVDMPAPGHDVDWN 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+  L   V+Q TA YAAT ++H+E  F  +PE+K++SARGIEVGHIFYFG KYS PM A
Sbjct: 241 DLQGL---VDQRTALYAATEEMHDEAAFGEVPEDKKLSARGIEVGHIFYFGEKYSKPMKA 297

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG+      GSYG+G  R++ A+IE+SHD  GIIWP+SVAPF +++IN++  D+ 
Sbjct: 298 TVNGPDGEVTVHM-GSYGVGVSRLLGAIIEASHDEAGIIWPESVAPFDVAVINLRPGDEA 356

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACEK YA L+  G DV ++D  E+ G++FA  DL+G P Q+I+G K +++ KVE+K 
Sbjct: 357 CDAACEKAYAALTAAGRDVLYNDTDERPGAKFASMDLIGIPWQLIIGPKGLAEGKVELKQ 416

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG R+    ++V+N  
Sbjct: 417 RATGERQTALFDDVLNQL 434


>gi|260575893|ref|ZP_05843888.1| prolyl-tRNA synthetase [Rhodobacter sp. SW2]
 gi|259021819|gb|EEW25120.1| prolyl-tRNA synthetase [Rhodobacter sp. SW2]
          Length = 445

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 234/443 (52%), Positives = 317/443 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLTRYFLPVLKENPAEAQIVSHRYMLRAGMIKQQAAGIYSWLPLGFKVLRRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQ ADLW ESGRYD YG+EMLR+ DR  + ++YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPLLMPTLQPADLWRESGRYDDYGEEMLRITDRQKRELLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVTSYKDLPLTLYHIQWKFRDEMRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA TGE++VF      D  + +   D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAATGESEVFYDSAVTDIRLGAREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D     ++++++T+ YA T + H+E LF+++PE +R SARGIEVG IF+FGTKYS  M A
Sbjct: 241 DKAQCAAVMQEFTSLYARTDETHDESLFNAIPEERRRSARGIEVGQIFFFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T    DG    VQMGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVVTPDGSRVPVQMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDNG 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE IY  L   G D  +DD  E+ G++FA  DL+G P ++ VG + +++ KVE+  
Sbjct: 361 TDAACEAIYKALKARGLDPLYDDRDERAGAKFATMDLIGLPWRITVGPRGLANGKVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R +G+ E+MS E+ +      ++
Sbjct: 421 RRSGVSEEMSAEDAVARVVEIYA 443


>gi|148255883|ref|YP_001240468.1| prolyl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
 gi|166980102|sp|A5EK68|SYP_BRASB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146408056|gb|ABQ36562.1| Prolyl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
          Length = 444

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 250/439 (56%), Positives = 326/439 (74%), Gaps = 3/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG K L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGFKVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PTLQ ADLW ESGRYD+YG EMLR++DR+ + ++YGPT+EE++TDIFR+
Sbjct: 61  QNRAGALELLMPTLQLADLWRESGRYDAYGPEMLRISDRHKRELLYGPTNEEMITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYRNLP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL   G++ +YNKMFV+
Sbjct: 121 YVKSYRNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLDEAGARRAYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+C +D +D PIP  + D+D
Sbjct: 181 YLRTFARMGLKGIPMRAETGPIGGDLSHEFIVLAETGESGVYCDRDVLDLPIPPASVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT+ YAAT DVH+   F++ +PE +R+  RGIEVG IFYFGTKYS PM 
Sbjct: 241 --GDLTPIIKQWTSLYAATEDVHDGARFEAEVPEERRLHTRGIEVGQIFYFGTKYSEPMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +  +  GSYG+G  R+  A+IE+ HD  GI WP+ VAPF+  ++N+K    
Sbjct: 299 ALVAGPDGAEVTIHGGSYGVGVSRLAGAIIEACHDDAGIKWPEEVAPFRAVILNLKQGGS 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE++Y  L   G DV +DD  ++ G +FA ADL+G P Q++VG K +++ KVE+K
Sbjct: 359 DTDAACEQLYRDLLAKGVDVLYDDTEQRAGGKFATADLIGIPWQIMVGPKSLAEGKVEVK 418

Query: 420 HRLTGIREDMSLEEVINYA 438
            R  G R+ MS  +V+   
Sbjct: 419 TRSDGARQMMSPADVVARL 437


>gi|84683507|ref|ZP_01011410.1| prolyl-tRNA synthetase [Maritimibacter alkaliphilus HTCC2654]
 gi|84668250|gb|EAQ14717.1| prolyl-tRNA synthetase [Rhodobacterales bacterium HTCC2654]
          Length = 444

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 231/440 (52%), Positives = 313/440 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+IASH+LMLR GMI Q + GIYSWLPLG K L N+  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPSEAQIASHRLMLRAGMIKQQAAGIYSWLPLGYKVLKNIERIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQSADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFR+
Sbjct: 61  QQRAGHIPILMPTLQSADLWRESGRYDDYGQEMLRITDRHGRDMLYGPTNEEMVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFFMKDGYNFDLTREDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF   +  D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSEITDLKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            + +  +++E++T+ YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVEACQAVLEEFTSRYARTDETHDEALFNEIPEERRRVARGIEVGQIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T + +DG    V+MGS+GIG  R+V A+IE++HD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQDSDGNKVPVEMGSHGIGVSRLVGALIEANHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  L+  G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACETLYKALTAAGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E+++ E  +     
Sbjct: 421 RRTGESEELAPEAAVAKVRE 440


>gi|163740902|ref|ZP_02148295.1| prolyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
 gi|161385893|gb|EDQ10269.1| prolyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
          Length = 451

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 233/446 (52%), Positives = 313/446 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQSAAGIYSWLPLGFKVLKKIETIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD YG+EMLR++DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QMRAGHIPMLMPTLQSADLWKESGRYDDYGQEMLRISDRHGRDMLYGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLADTGE++VF      D        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADGGPIGGDYTHEFLVLADTGESEVFYDSAVTDLTFGDRAIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T+ YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS  + A
Sbjct: 241 SVEQCQGVLEEFTSKYARTDETHDEALFNEVPEERRRVARGIEVGQIFYFGTKYSEALGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 NVQGPDGKQSPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  L+  G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACESLYEALTAAGLEPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R +G  E++S E  +      ++N++
Sbjct: 421 RRSGESEELSPEAAVQKIVEIYANHQ 446


>gi|163737417|ref|ZP_02144834.1| prolyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
 gi|161388943|gb|EDQ13295.1| prolyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
          Length = 451

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 233/446 (52%), Positives = 313/446 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQSAAGIYSWLPLGFKVLKKIETIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD YG+EMLR++DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QMRAGHIPMLMPTLQSADLWKESGRYDDYGQEMLRISDRHGRDMLYGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLADTGE++VF      D        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADGGPIGGDYTHEFLVLADTGESEVFYDSAVTDLTFGDRAIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T+ YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS  + A
Sbjct: 241 SVEQCQGVLEEFTSKYARTDETHDEALFNEVPEERRRVARGIEVGQIFYFGTKYSEALGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 NVQGPDGKQSPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  L+  G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACESLYEALTAAGLEPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R +G  E++S E  +      ++N++
Sbjct: 421 RRSGESEELSPEAAVQKIVEIYANHQ 446


>gi|49475642|ref|YP_033683.1| prolyl-tRNA synthetase [Bartonella henselae str. Houston-1]
 gi|81827712|sp|Q6G3A4|SYP_BARHE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|49238449|emb|CAF27677.1| Prolyl-tRNA synthetase [Bartonella henselae str. Houston-1]
          Length = 441

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 269/439 (61%), Positives = 339/439 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP++AEI SH+LMLR GMI Q + GIYSWLPLG+K LD +  IIREE
Sbjct: 1   MRLSQYFLPLLKENPKEAEIISHRLMLRAGMIRQQTSGIYSWLPLGKKVLDKICKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GAIE+ +PT+QSADLW ES RYD YG EMLR+ DR  + ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGAIEILMPTIQSADLWRESDRYDDYGLEMLRIKDRQKRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EGSK SYN+MFV+
Sbjct: 121 YIRSYKDLPLNLYHIQWKFRDEIRPRFGVMRSREFLMKDAYSFDLDYEGSKISYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F  LGLK+IPMRA++GPIGG LSHEFI+LA+TGE+ +FC K F++  +P  + DF 
Sbjct: 181 YLRTFSCLGLKAIPMRADTGPIGGKLSHEFIILAETGESAIFCDKHFLELTVPDSSIDFS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L +IV+QWT+ YAAT ++H+E+ +  + +N R+SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKAILANIVKQWTSFYAATEEMHDEEEWAKISDNNRLSARGIEVGHIFHFGTKYSAPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+VAAVIE+SHD  GIIWP S+APF   +IN+K  D+ 
Sbjct: 301 KVMGQDGKEHLVSMGSYGIGPSRLVAAVIEASHDENGIIWPKSIAPFDFGIINMKPDDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  ACE +Y  L   G D   DD  E+ GS+FA  DL+G P Q+IVG K V+ ++VEIK 
Sbjct: 361 CTHACETLYKGLRYAGFDPLLDDRNERPGSKFATMDLIGLPTQIIVGPKSVAQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TGI++ +++E V+N  S
Sbjct: 421 RKTGIKKSLTVENVLNQFS 439


>gi|83954043|ref|ZP_00962763.1| prolyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
 gi|83841080|gb|EAP80250.1| prolyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
          Length = 446

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 236/439 (53%), Positives = 316/439 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRLMLRAGMIKQSAAGIYSWLPLGFKVLRKIETIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGR+D+YG EMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPMLMPTLQSADLWKESGRFDAYGPEMLRIKDRQDRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  V+
Sbjct: 121 HVGSYKDLPMTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYTFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF      +        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSQITELKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E LF  +P  ++ SARGIEVG IFYFGTKYS PM A
Sbjct: 241 SVDQCQAVMEEFTSRYARTDETHDEALFAEVPAERQRSARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D+ 
Sbjct: 301 TVQGPDGKPVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDEQ 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +YA L  +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDALYASLQALGLDPLYDDTKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG  E+M+ E  +   +
Sbjct: 421 RRTGESEEMTPEAAVEKIA 439


>gi|299135009|ref|ZP_07028200.1| prolyl-tRNA synthetase [Afipia sp. 1NLS2]
 gi|298589986|gb|EFI50190.1| prolyl-tRNA synthetase [Afipia sp. 1NLS2]
          Length = 445

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 249/442 (56%), Positives = 330/442 (74%), Gaps = 3/442 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++FLPIL+E P++AEI SH+LMLR GM+ Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLTRFFLPILKETPKEAEIVSHRLMLRAGMMRQEAAGIYAWLPLGFRVLKKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QDRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIQDRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYR+LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ SYNKMFV+
Sbjct: 121 YVKSYRSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDIDEAAARLSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRAE+GPIGGDLSHEFIVLA+TGE+ VFC+KD +D P+P  + ++D
Sbjct: 181 YLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVFCNKDVLDLPVPGADVNYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I++QWT  YAAT DVH+   ++  +P +KRV+ RGIEVG IFYFGTKYS  M 
Sbjct: 241 --GDLTPIIKQWTELYAATEDVHDTARYEKEVPADKRVNTRGIEVGQIFYFGTKYSDSMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G+DG +  +  GSYGIG  R+V A+IE+ HD  GI WP+ VAPF+++++N+K    
Sbjct: 299 ALVVGSDGAEKPIHGGSYGIGVSRLVGAIIEACHDENGIQWPEEVAPFRVAILNLKQGAA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACEK+Y  LS  G DV +DD  ++ G +FA ADL+G P Q++VG K +++ KVEIK
Sbjct: 359 DTDTACEKLYKELSAAGVDVLYDDTDQRPGGKFATADLIGIPWQILVGPKGLAEGKVEIK 418

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R  G RE MS++E   +   +
Sbjct: 419 KRADGSREMMSVDEASRHFQTK 440


>gi|254511426|ref|ZP_05123493.1| prolyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
 gi|221535137|gb|EEE38125.1| prolyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
          Length = 456

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 233/443 (52%), Positives = 314/443 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 11  MRLSRYFLPVLKENPSEAQIVSHRLMLRAGMIKQAAAGIYSWLPLGFKVLRKLENIVHEE 70

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +P LQSADLW ESGRYD YG+EMLR+ DR+D+ M++ PT EE++TDIFR 
Sbjct: 71  QARAGHIAIQMPILQSADLWRESGRYDGYGQEMLRMKDRHDRDMLFTPTAEELVTDIFRG 130

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 131 HVSSYKDLPLTLYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTMEDALHAYNRHLVS 190

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF      D      + D+D
Sbjct: 191 YLRTYERMGLQAIPMRADSGPIGGDYTHEFLVLAETGESEVFYDSAVTDLTFGDRDIDYD 250

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +     +I++++T+ YA T + H+E LFD +PE++R  ARGIEVG IFYFGT YS  M A
Sbjct: 251 NRDQCQAIMDEFTSKYARTDETHDEALFDQVPEDRRRVARGIEVGQIFYFGTNYSEAMGA 310

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 311 TVQGPDGKPVPVHMGSHGIGVSRLIGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 370

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +YA L+ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 371 ADAACDTLYAALTALGLEPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 430

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG  E++S E  +   +  + 
Sbjct: 431 RRTGESEELSPEAAVAKIAEIYK 453


>gi|83942873|ref|ZP_00955333.1| prolyl-tRNA synthetase [Sulfitobacter sp. EE-36]
 gi|83845881|gb|EAP83758.1| prolyl-tRNA synthetase [Sulfitobacter sp. EE-36]
          Length = 446

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 237/439 (53%), Positives = 315/439 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRLMLRAGMIKQSAAGIYSWLPLGFKVLRKIETIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGR+D+YG EMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPMLMPTLQSADLWKESGRFDAYGPEMLRIKDRQDRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  V+
Sbjct: 121 HVGSYKDLPMTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYTFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF      +        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSQITELKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +++E++T+ YA T + H+E LF  +P  ++ SARGIEVG IFYFGTKYS PM A
Sbjct: 241 SVDQCQAVMEEFTSRYARTDETHDEALFAEVPAERQRSARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D+ 
Sbjct: 301 TVQGPDGKPVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDEQ 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC  +YA L  +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACNALYASLQALGLDPLYDDTKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG  E+M+ E  I   +
Sbjct: 421 RRTGESEEMTPEAAIEKIA 439


>gi|182678768|ref|YP_001832914.1| prolyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|226699120|sp|B2IDI9|SYP_BEII9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|182634651|gb|ACB95425.1| prolyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 439

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 257/440 (58%), Positives = 335/440 (76%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR GMI Q + GIY+WLPLG + L  V  I+REE
Sbjct: 1   MRLSRYFLPILRENPKEAEIVSHRLMLRAGMIRQEAAGIYAWLPLGFRVLQKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +PTLQ ADLW E+GRYD+YG EMLR+ DR+++ ++YGPT+E+++T+IFR+
Sbjct: 61  MDRAGAIELLMPTLQLADLWRETGRYDAYGPEMLRIKDRHERELLYGPTNEDMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SYR+LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL  EG++ SYNKMFV+
Sbjct: 121 YVRSYRDLPKILYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLDEEGARLSYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRI+ R+GL +IPMRAE+GPIGGDLSHEFI+LADTGE+ VFC+KD +D PIP E+TD+D
Sbjct: 181 YLRIYKRMGLTAIPMRAETGPIGGDLSHEFIILADTGESAVFCNKDVLDLPIPDEHTDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L+ I++QWT+ YAAT DVH+   F+S  P  KR+  RGIEVG +FYFG KYS PM 
Sbjct: 241 --GDLSPIIKQWTSLYAATEDVHDAARFESETPPEKRIERRGIEVGQVFYFGEKYSKPMR 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +   G DG +   Q GSYG+G  R+V A+IE+SHD  GIIWP++VAPF + L N+K  D 
Sbjct: 299 SLITGPDGSEKPFQGGSYGVGVSRLVGAIIEASHDEAGIIWPEAVAPFTVGLANLKVGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               AC +IY RL  +G DV +DD  ++ G +FA  DL+G P Q+IVG K +++ K+E+K
Sbjct: 359 ATDAACAEIYERLEALGVDVLYDDTDDRPGGKFAKLDLIGLPYQIIVGPKGLAEGKIEMK 418

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R TG RE++S+  VI   +
Sbjct: 419 TRATGARENLSIAAVIERFT 438


>gi|217976887|ref|YP_002361034.1| prolyl-tRNA synthetase [Methylocella silvestris BL2]
 gi|254782909|sp|B8EP84|SYP_METSB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|217502263|gb|ACK49672.1| prolyl-tRNA synthetase [Methylocella silvestris BL2]
          Length = 440

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 249/439 (56%), Positives = 324/439 (73%), Gaps = 3/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR GMI Q + GIYSWLPLG + L  V  I+R+E
Sbjct: 1   MRLSRYFLPILRENPKEAEIVSHRLMLRAGMIRQEAAGIYSWLPLGLRVLQKVAEIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +PTLQ ADLW E+GRY++YG EMLR+ DR+++ M+YGPT+E+++T IFRS
Sbjct: 61  MNRAGAIELLMPTLQLADLWRETGRYEAYGPEMLRIKDRHEREMLYGPTNEDMITAIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SYR LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MFVS
Sbjct: 121 YVRSYRELPKILYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAAARLAYNRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRIF R+GL+ IPMRAE+GPIGGD SHEFI+LA+TGE+ V+C    ++ PIP E  D+D
Sbjct: 181 YLRIFARMGLRVIPMRAETGPIGGDQSHEFIILAETGESAVYCDAGVLNLPIPDETIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L+ IV+QWT+ YAAT DVH+ + F     E +R+  RGIEVG +F+FG KYS PM+
Sbjct: 241 --GDLSPIVKQWTSLYAATEDVHDAERFALETTEGQRIETRGIEVGQVFFFGDKYSKPMN 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +   Q GSYG+G  R+V A+IE++HD  GIIWP SVAPFK+ + N+K  D 
Sbjct: 299 ANIAGPDGVERPFQGGSYGVGVSRLVGALIEANHDEAGIIWPASVAPFKVGIANLKVGDA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACEK+ A L K G DV +DD  ++ G++FA  DL+G P Q IVG K +++ K+EIK
Sbjct: 359 ATDAACEKLLAALEKAGVDVLYDDSADRPGAKFAKLDLIGLPYQAIVGPKGLAEGKIEIK 418

Query: 420 HRLTGIREDMSLEEVINYA 438
            R +G R ++SL+E I   
Sbjct: 419 TRASGERVELSLDEAIERL 437


>gi|146341083|ref|YP_001206131.1| prolyl-tRNA synthetase [Bradyrhizobium sp. ORS278]
 gi|166980103|sp|A4YVI0|SYP_BRASO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146193889|emb|CAL77906.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
           [Bradyrhizobium sp. ORS278]
          Length = 444

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 248/439 (56%), Positives = 326/439 (74%), Gaps = 3/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLPIL+ENP++AEI SH+LMLR GM+ Q + GIY+WLPLG K L  +  I+REE
Sbjct: 1   MRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGFKVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PTLQ ADLW ESGRYD+YG EMLR++DR+ + ++YGPT+EE++T+IFR+
Sbjct: 61  QNRAGALELLMPTLQLADLWRESGRYDAYGPEMLRISDRHKRELLYGPTNEEMITEIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYRNLP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFDL   G++ +YNKMFV+
Sbjct: 121 YVKSYRNLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDLDEAGARRAYNKMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK IPMRAE+GPIGGDLSHEFIVLA+TGE+ V+C ++ +D PIPS + D+D
Sbjct: 181 YLRTFARMGLKGIPMRAETGPIGGDLSHEFIVLAETGESGVYCDRNVLDLPIPSASVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  I+++WT+ YAAT DVH+   F++ +P  +RV  RGIEVG IFYFGTKYS PM 
Sbjct: 241 --GDLTPIIKEWTSLYAATEDVHDGARFEAEVPAERRVHTRGIEVGQIFYFGTKYSEPMK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG +  +  GSYG+G  R+  A+IE+ HD  GI WP+ VAPF+  ++N+K    
Sbjct: 299 ALVAGPDGAEVTIHGGSYGVGVSRLAGAIIEACHDDAGIKWPEEVAPFRAVILNLKQGGS 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE++Y  L   G DV +DD  ++ G +FA ADL+G P Q++VG K +++ KVE+K
Sbjct: 359 DTDAACEQLYRDLLAKGVDVLYDDTEQRAGGKFATADLIGIPWQIMVGPKSLAEGKVEVK 418

Query: 420 HRLTGIREDMSLEEVINYA 438
            R  G RE MS  +++   
Sbjct: 419 TRSDGAREMMSPADIVARL 437


>gi|319408595|emb|CBI82250.1| Prolyl-tRNA synthetase [Bartonella schoenbuchensis R1]
          Length = 441

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 261/439 (59%), Positives = 333/439 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYF+PIL+ENP++AEI SH+LMLR GMI Q + GIYSWLPLG+K LD V  IIREE
Sbjct: 1   MRLSKYFIPILKENPKEAEIVSHRLMLRAGMIRQQTAGIYSWLPLGKKVLDKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q + GA+E+ +PT+QS DLW ESGRYD YG EMLR+ DR ++ ++YGPT+EE++TDIFRS
Sbjct: 61  QKQAGALEILMPTIQSVDLWHESGRYDDYGFEMLRIKDRQERDLLYGPTNEEIVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  E +K SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYQIQWKFRDEIRPRFGVMRSREFLMKDAYSFDLDYESAKISYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK IP RA++GPIGG+ SHEF +LA+TGE+ +FC K F+D   P  + DF 
Sbjct: 181 YLRTFSRMGLKVIPTRADTGPIGGERSHEFTILAETGESAIFCDKQFLDINAPLFSIDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  IV+QWT  YAAT ++HNE+ +  +P++ ++SARGIEVGHIFYFGTKYS+PM A
Sbjct: 241 DKTVLTDIVKQWTTFYAATEEMHNEEEWSKIPKSNQLSARGIEVGHIFYFGTKYSVPMEA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H V MGSYGIG  R+VAA IE+SHD  GIIWP  +APF   +IN+K  D+ 
Sbjct: 301 KVMGKDGKEHPVFMGSYGIGPSRLVAAAIEASHDENGIIWPKPIAPFDFGIINMKPDDKK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y  L + G D   DD  E+ G +FA+ DL+G P Q+IVG K  + ++VEIK 
Sbjct: 361 CNHMCETLYQGLIRAGFDPLLDDRNERPGVKFAIMDLIGLPTQIIVGPKSAAQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG +E +++E V+N  S
Sbjct: 421 RKTGAKESLTIESVLNRLS 439


>gi|163795649|ref|ZP_02189615.1| Prolyl-tRNA synthetase [alpha proteobacterium BAL199]
 gi|159179248|gb|EDP63781.1| Prolyl-tRNA synthetase [alpha proteobacterium BAL199]
          Length = 437

 Score =  401 bits (1031), Expect = e-110,   Method: Composition-based stats.
 Identities = 243/438 (55%), Positives = 312/438 (71%), Gaps = 3/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S YFLP +++ PRDAEI SH+LMLR GMI Q S GIYSWLPLG + L  +  ++REE
Sbjct: 1   MRLSGYFLPTMKDTPRDAEIVSHRLMLRAGMIQQASAGIYSWLPLGLRVLKKIEQVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  G  E+ +PT+QSADLW ESGRYD YGKEMLR+ DR+D+ M++GPT+EEV+TDIFR+
Sbjct: 61  QDAAGWQEVLMPTIQSADLWRESGRYDDYGKEMLRIKDRHDRDMLFGPTNEEVITDIFRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H++SY+ LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E +K +YN+ FV+
Sbjct: 121 HVRSYKALPGRLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDFEAAKRAYNRQFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+ F RLGLK+IPM A+SGPIGGDLSHEFI+LADTGE++VFC KD       +     D
Sbjct: 181 YLKTFDRLGLKAIPMAADSGPIGGDLSHEFIILADTGESEVFCHKD--WLTSEAVPATVD 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L  IV+   A YAAT + H+      + E   V  RGIEVGHIFYFGTKYS P+ A
Sbjct: 239 YDADLQPIVDACLARYAATDEKHDPA-TCPVAEADLVRTRGIEVGHIFYFGTKYSDPLGA 297

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGKD  V MGSYG+G  R+V  +IE+SHD  GI+WP+ VAPFK+ L+N+K  D  
Sbjct: 298 KVAGPDGKDVTVHMGSYGVGVSRLVGGIIEASHDDAGIVWPEPVAPFKVGLVNLKVGDAA 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  A E +Y +L K G +V  DD  E+ G++ A  DL+G P QV+VG + +++  VE+K+
Sbjct: 358 CDSATEGLYGKLLKAGIEVLMDDRDERPGAKLAGMDLIGLPWQVVVGPRGLANGIVEMKN 417

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG +++M+ +  +N  
Sbjct: 418 RKTGAKDEMTPDAALNRL 435


>gi|241761006|ref|ZP_04759095.1| prolyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|260753028|ref|YP_003225921.1| prolyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|241374625|gb|EER64086.1| prolyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|258552391|gb|ACV75337.1| prolyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 443

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 235/439 (53%), Positives = 316/439 (71%), Gaps = 2/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+++E P DA+I SHKLMLR GMI Q + GIY+WLPLG + L  +  IIREE
Sbjct: 1   MRLSRYFLPVMKETPADAQIISHKLMLRAGMIRQTAAGIYAWLPLGLRVLRRIEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PTLQ+ADLW ESGRYD+YG EMLR+ DR+++ ++YGPT+EE++T + R 
Sbjct: 61  QARAGALELLMPTLQTADLWRESGRYDAYGPEMLRIKDRHNRELLYGPTNEEMITALIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SYR+LP  FY IQ KFRDE+RPRFGVMR REFLMKDAYSFD+     +H+YN+MFV+
Sbjct: 121 NLQSYRDLPRIFYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDIDETAGRHNYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F RLGL++IPM+A++GPIGGDLSHEFIVLA  GE+ VF   +  + P      DFD
Sbjct: 181 YLNSFSRLGLRAIPMQADTGPIGGDLSHEFIVLAPNGESDVFYHSN-WEQPTRHIEADFD 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +L SIV    + YAAT +  +  L ++   +K   +RGIEVGHIF+FGTKYS PM  
Sbjct: 240 DPKALQSIVNDHISDYAATDEKRDP-LREAQAGDKLRQSRGIEVGHIFFFGTKYSKPMGF 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DGK   +QMGSYGIG  R++ A+IE+SHD  GIIWP++VAP+ + LIN++  D+ 
Sbjct: 299 TLPGPDGKPIPIQMGSYGIGISRLLGAIIEASHDDNGIIWPEAVAPYHVGLINLRIDDEN 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           CR   + +Y RL   G D  +DD  E+ G++FA  DL+G P QV++G K      VE+K+
Sbjct: 359 CRAIADSLYQRLEAAGIDTLYDDRNERGGAKFATMDLIGLPWQVVIGPKGAEKGVVELKN 418

Query: 421 RLTGIREDMSLEEVINYAS 439
           R +G ++ +S+E+  N  +
Sbjct: 419 RASGEKQTISVEDAFNLLT 437


>gi|197105248|ref|YP_002130625.1| prolyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
 gi|226701316|sp|B4RBZ9|SYP_PHEZH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|196478668|gb|ACG78196.1| prolyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
          Length = 439

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 238/440 (54%), Positives = 322/440 (73%), Gaps = 3/440 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG K L  +  ++REE
Sbjct: 1   MRLSRYFMPTLREAPSDAQIVSHQLMLRAGMIRQEAAGIYAWLPLGLKVLKKIEQVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +PTLQ ADLW ESGRYD YG+EMLR+ DR+++ ++YGPT EEV+TDIFR+
Sbjct: 61  MDRAGAIEVLMPTLQLADLWRESGRYDDYGEEMLRIKDRHERDLLYGPTAEEVITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MF +
Sbjct: 121 YIKSYKDLPKNLYNIQWKFRDERRPRFGVMRGREFLMKDAYSFDIDEAAARRAYNRMFCA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL ++ RLGLK+IP+RA++GPIGGDLSHEFI+LADTGE+QVF  +D ++   P  + D+D
Sbjct: 181 YLNVYARLGLKAIPVRADTGPIGGDLSHEFIILADTGESQVFAHRDLVEMGAPGPDIDWD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L  +V+Q T  YAA+ ++H++  F++  PE+KR++ARGIEVGHIFYFG KYS PM+
Sbjct: 241 --GDLEPLVQQRTRLYAASDEMHDQARFETEAPEDKRMTARGIEVGHIFYFGEKYSRPMN 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG + +V MGSYG+G  R+V A+IE+SHD  GI+WPDSVAPF  +++N++  + 
Sbjct: 299 AKVAGPDGAERFVHMGSYGVGVSRLVGAIIEASHDEAGIVWPDSVAPFGAAVVNLRPGEA 358

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E+ Y  L   G +   DD  E+ G++FA  DL+G P Q+IVG K V++  VEIK
Sbjct: 359 AVDAVAEQAYGALQAAGKEPLLDDRDERPGAKFASLDLVGVPWQLIVGPKGVAEGVVEIK 418

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R TG R+ + L+  +   +
Sbjct: 419 RRATGERQTLPLDAALKAIT 438


>gi|110679326|ref|YP_682333.1| prolyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
 gi|114152246|sp|Q168E6|SYP_ROSDO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|109455442|gb|ABG31647.1| prolyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
          Length = 451

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 231/443 (52%), Positives = 312/443 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++YF+P+L+ENP +A+I SH+LMLR GMI Q++ GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLTRYFMPVLRENPAEAQIVSHRLMLRAGMIKQNAAGIYSWLPLGFKVLRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G + M +PT+QSADLW ESGRYD+YG EMLR+ DR D+ M++GPT+EE++TDIFRS
Sbjct: 61  QIRAGHVPMLMPTMQSADLWRESGRYDAYGPEMLRIRDRQDRDMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEMRPRFGVMRGREFFMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D      + D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSAVTDLTFGDRDIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T  YA T + H++ LF ++P  ++  ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVEQCQGVMEEFTNLYARTDETHDQALFAAIPAERQRQARGIEVGQIFYFGTKYSDAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R+V A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 KVQGPDGKPTAVHMGSHGIGVSRLVGAIIEASHDEKGIIWPEGVTPFHCGIVNLKQGDTE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +YA L  +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDALYASLRALGLDPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG   ++  EE I   +  ++
Sbjct: 421 RKTGESSELPPEEAIEKIAKIYA 443


>gi|294852177|ref|ZP_06792850.1| prolyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
 gi|294820766|gb|EFG37765.1| prolyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
          Length = 435

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 255/434 (58%), Positives = 332/434 (76%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +PIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREEQNR GA 
Sbjct: 1   MPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREEQNRAGAN 60

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++ M++GPT+EE++TDIFRS+++SY++
Sbjct: 61  EILMPTIQSADLWRESGRYDAYGKEMLRIQDRQEREMLFGPTNEEMVTDIFRSYVRSYKD 120

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVSYLR F R
Sbjct: 121 LPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVSYLRTFAR 180

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           +GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+C + ++D  +P  +TDF +   L  
Sbjct: 181 VGLQAIPMRADTGPIGGDLSHEFIILAETGESQVYCDRAYLDLAVPGADTDFRNDAQLTD 240

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           IV +WT PYAAT ++H+E  +  +    +VSARGIEVGHIF+FGTKYS PM A  +G DG
Sbjct: 241 IVTRWTTPYAATDEMHDEADWAKVKPESQVSARGIEVGHIFHFGTKYSEPMGAKVQGPDG 300

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K+H V MGSYGIG  R+VAA IE+SHD  GIIWP ++APF   ++N+K  D+ C    EK
Sbjct: 301 KEHLVSMGSYGIGPSRLVAAAIEASHDDAGIIWPKAIAPFGAGIVNMKPGDEGCDGVSEK 360

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y  L+  G D   DD  E+ G++FA  DL+G P QVIVG + V+  +VE+K R TG R+
Sbjct: 361 LYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPTQVIVGPRGVAAGEVEVKDRKTGERQ 420

Query: 428 DMSLEEVINYASHR 441
            + +E  IN  + +
Sbjct: 421 SLGIEAAINMLTAQ 434


>gi|126739185|ref|ZP_01754879.1| prolyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
 gi|126719802|gb|EBA16510.1| prolyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
          Length = 451

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 236/445 (53%), Positives = 312/445 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+ MLR GMI Q S GIYSWLPLG K L  +  I+ +E
Sbjct: 1   MRLSRYFLPVLKETPSEAQIVSHRYMLRAGMIKQSSAGIYSWLPLGFKVLKKIETIVHDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFR 
Sbjct: 61  QMRAGHIPMLMPTLQSADLWKESGRYDDYGEEMLRINDRHGRDMLYGPTNEELITDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  V+
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF      D        D+D
Sbjct: 181 YLRSYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSAVTDLTFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T+ YA T + H+E LF  +PE +R  ARGIEVG IFYFGTKYS  + A
Sbjct: 241 SVEQCQGVLEEFTSKYARTDETHDEALFKEIPEERRRVARGIEVGQIFYFGTKYSEALGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T + ADG    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQTADGGSVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACEKIYA LS VG +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEKIYAALSAVGLEPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R TG  E+MS EE +   +  ++ +
Sbjct: 421 RRTGESEEMSPEEAVKKVAEIYAKH 445


>gi|283856263|ref|YP_162195.2| prolyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|292495061|sp|P75000|SYP_ZYMMO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|283775258|gb|AAV89084.2| prolyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 443

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 235/439 (53%), Positives = 314/439 (71%), Gaps = 2/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+++E P DA+I SHKLMLR GMI Q + GIY+WLPLG + L  +  IIREE
Sbjct: 1   MRLSRYFLPVMKETPADAQIISHKLMLRAGMIRQTAAGIYAWLPLGLRVLRRIEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PTLQ+ADLW ESGRYD+YG EMLR+ DR+++ ++YGPT+EE++T + R 
Sbjct: 61  QARAGALELLMPTLQTADLWRESGRYDAYGPEMLRIKDRHNRELLYGPTNEEMITALIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SYR+LP  FY IQ KFRDE+RPRFGVMR REFLMKDAYSFD+     +H+YN+MFV+
Sbjct: 121 NLQSYRDLPRIFYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDIDETAGRHNYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F RLGL++IPM+A++GPIGGDLSHEFIVLA  GE+ VF   +  + P      DFD
Sbjct: 181 YLNSFSRLGLRAIPMQADTGPIGGDLSHEFIVLAPNGESDVFYHSN-WEQPTRHIEADFD 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +L SIV    + YAAT +  +  L ++   +K   +RGIEVGHIF+FGTKYS PM  
Sbjct: 240 DPKALQSIVNDHISDYAATDEKRDP-LREAQAGDKLRQSRGIEVGHIFFFGTKYSKPMGF 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DGK   +QMGSYGIG  R++ A+IE+SHD  GIIWP++VAP+ + LIN++  D+ 
Sbjct: 299 TLPGPDGKPIPIQMGSYGIGISRLLGAIIEASHDDNGIIWPEAVAPYHVGLINLRIDDEN 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           CR   + +Y RL   G D  +DD  E+ G++FA  DL+G P QV++G K      VE+K+
Sbjct: 359 CRAIADSLYQRLEAAGIDTLYDDRNERGGAKFATMDLIGLPWQVVIGPKGAEKGVVELKN 418

Query: 421 RLTGIREDMSLEEVINYAS 439
           R  G ++ +S+E   N  +
Sbjct: 419 RANGEKQTISVENAFNLLT 437


>gi|332559243|ref|ZP_08413565.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides WS8N]
 gi|332276955|gb|EGJ22270.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides WS8N]
          Length = 445

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 237/443 (53%), Positives = 312/443 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQQAAGIYSWLPLGFKVLKRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQ ADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QIRAGHIPLLMPTLQPADLWRESGRYDDYGEEMLRITDRHKRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDL  E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLDYESAIHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA SGPIGGD +HEF+VLA TGE++VF      D        ++D
Sbjct: 181 YLRTYERMGLQAIPMRAASGPIGGDNTHEFLVLASTGESEVFYDAAITDLKFGDRVVNYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D     +IV++WTAPYA T + H+E +F  +PE +R S+RGIEVG IFYFGTKYS PM A
Sbjct: 241 DRAECEAIVKEWTAPYARTDETHDEAIFAQIPEERRRSSRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T   A G    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVVTAGGNRVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHAGIVNLKQGDSS 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  LS  G +  +DD  E+ G++FA  DL+G P ++ VG + ++  KVE+ +
Sbjct: 361 TDLACEALYRDLSARGLEPLYDDRDERAGAKFATMDLIGLPWRITVGPRGIAAGKVELTN 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG  E+MS    ++  +  ++
Sbjct: 421 RRTGESEEMSSGAAVDRLAQIYA 443


>gi|144899844|emb|CAM76708.1| prolyl-tRNA synthetase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 429

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 227/439 (51%), Positives = 305/439 (69%), Gaps = 11/439 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLP L+E P +A+IASH+LMLR GMI Q + GIY+WLPLG K L  +  I+REE
Sbjct: 1   MRLSRFFLPTLKETPSEAQIASHRLMLRAGMIRQSASGIYTWLPLGWKVLQKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PT+QSAD+W ESGRYD+YGKEMLR+ DR+D+ M++GPT+EE++T IFR 
Sbjct: 61  QDAAGAQELLMPTIQSADIWRESGRYDAYGKEMLRIVDRHDREMLFGPTNEELITQIFRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSYR LP   Y IQ KFRDE+RPRFGVMR REFLMKD+YSFD+  +G+K SY  MF +
Sbjct: 121 NVKSYRELPKILYHIQWKFRDEVRPRFGVMRGREFLMKDSYSFDIDFDGAKRSYEAMFNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL +IPM A+SG IGG+L+HEF VLA+TGE+ VF    + +           
Sbjct: 181 YLRTFKRMGLTAIPMVADSGAIGGNLTHEFHVLAETGESGVFYDVAYEELAAKDA----- 235

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   +E  +  YA T + H+    +  P ++   ARGIEVGHIFYFGTKYS  M A
Sbjct: 236 ------VDLEALSKLYAVTDEKHDPNSPECPPADRLKVARGIEVGHIFYFGTKYSKAMGA 289

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG   +V+MGSYGIG  R+V A+IE+ HD +GI WP++VAPFK+ LIN+KA D  
Sbjct: 290 VVAGPDGNPVHVEMGSYGIGVSRLVGAIIEAYHDDRGIKWPEAVAPFKVGLINLKAGDGA 349

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y  LS+ G +V +DD  ++ G +FA  DL+G P Q++ G K V+   VE+K+
Sbjct: 350 CDRVCEDMYRALSEQGVEVLYDDRDDRAGVKFADMDLIGLPWQLVAGPKGVAAGLVELKN 409

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG ++++S+E  +   +
Sbjct: 410 RHTGEKQELSVEAALAQLT 428


>gi|86138530|ref|ZP_01057103.1| prolyl-tRNA synthetase [Roseobacter sp. MED193]
 gi|85824590|gb|EAQ44792.1| prolyl-tRNA synthetase [Roseobacter sp. MED193]
          Length = 451

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 228/446 (51%), Positives = 318/446 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQSSAGIYSWLPLGFKVLKKLEGIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G + M +PT+QSADLW ESGRYD YG+EMLR+ DR+ + M++ PT EE++TDIFR+
Sbjct: 61  QQRAGHMPMLMPTIQSADLWRESGRYDDYGQEMLRVEDRHGRDMLFTPTAEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  V+
Sbjct: 121 HVSSYKDLPLTMYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF      D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSAVTDLTFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++     ++E++T+ YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS  ++A
Sbjct: 241 NVEQCQGVLEEFTSKYARTDETHDEALFNQVPEERRRVARGIEVGQIFYFGTKYSDALNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVQGPDGKPTPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC ++YA ++ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACNQLYAAMTALGLEPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R TG  E++S E+ +   +  +++++
Sbjct: 421 RRTGESEELSPEDAVKKVAAIYASHQ 446


>gi|294084092|ref|YP_003550850.1| prolyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663665|gb|ADE38766.1| prolyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 437

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 231/441 (52%), Positives = 320/441 (72%), Gaps = 4/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P++A+IASH+LMLR GM+ Q S GIYSWLPLG++ LD +  I+REE
Sbjct: 1   MRLSQYFLPLLKETPKEAQIASHRLMLRAGMVQQSSAGIYSWLPLGKRVLDKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA+E+ +PT+Q A+LW ESGRYD YG EMLR+ DR+++ M+YGPT+EE +TDIFR+
Sbjct: 61  QNRAGALEILMPTIQPAELWQESGRYDDYGAEMLRIVDRHERNMLYGPTNEEQITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H++SY+ LP   Y IQ KFRDE+RPRFG+MR REFLMKDAYSFDL  + ++ +YN+MFVS
Sbjct: 121 HVRSYKALPLNMYHIQWKFRDEVRPRFGIMRGREFLMKDAYSFDLDGDKARAAYNRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+ F R+GL +IPM A++GPIGGD+SHEFI+LA+TGE+ V+  KD+M+  + ++    D
Sbjct: 181 YLKTFARMGLTAIPMEADTGPIGGDMSHEFIILAETGESGVYFHKDWMNINLDAD---ID 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L   V+++T+ YA   D+H+      +  ++ +S RGIE+GHIFYFGTKYS  M A
Sbjct: 238 YNADLQPFVDKYTSLYARADDMHDADNC-PVTADELMSLRGIEIGHIFYFGTKYSEAMGA 296

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DGK   V MGSYGIG  R+V  +IE+SHD KGIIWPDSVAPF ++++N+K  D V
Sbjct: 297 TVSGPDGKAVPVHMGSYGIGVSRLVGGIIEASHDDKGIIWPDSVAPFGVAIVNLKPGDAV 356

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    E++Y +    G +   DD  ++ G++ A  DL+G P Q++VG + + ++ VE+K 
Sbjct: 357 CDAEAERLYEQFDNAGLEPLLDDRNDRPGAKMASMDLIGIPWQIVVGPRGMENNMVEVKR 416

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG   +MS +  +    +R
Sbjct: 417 RKTGETAEMSPDSAVIKILNR 437


>gi|255262231|ref|ZP_05341573.1| prolyl-tRNA synthetase [Thalassiobium sp. R2A62]
 gi|255104566|gb|EET47240.1| prolyl-tRNA synthetase [Thalassiobium sp. R2A62]
          Length = 445

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 232/444 (52%), Positives = 318/444 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP DA+I SH+LMLR GMI Q + GIYSWLPLG K L N+  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPADAQIVSHRLMLRAGMIKQSAAGIYSWLPLGYKVLKNIENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q + G + M +PT+QSADLW ESGRYD YG+EMLR+ DR+ + M+Y PT EE++T+IFRS
Sbjct: 61  QAKAGHMPMLMPTMQSADLWRESGRYDDYGEEMLRVTDRHGRDMLYTPTAEELITEIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY+++P T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDMPLTLYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D      + DFD
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSAVTDLSFGDRDIDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +I++++T  YA T + H+E +F+ +PE +R +ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVDQCAAIMQEFTTKYARTDETHDEAVFNEVPEERRRTARGIEVGQIFYFGTKYSDAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D+ 
Sbjct: 301 TVQGPDGKPVAVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGILNMKQGDED 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ IY   + +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 TDAACQAIYDSFAALGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R T   E+M+ E+ +   +  +++
Sbjct: 421 RRTSESEEMTAEQAVEKVAAIYAS 444


>gi|85704335|ref|ZP_01035438.1| prolyl-tRNA synthetase [Roseovarius sp. 217]
 gi|85671655|gb|EAQ26513.1| prolyl-tRNA synthetase [Roseovarius sp. 217]
          Length = 451

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 243/451 (53%), Positives = 319/451 (70%), Gaps = 2/451 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+IASH+LMLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPSEAQIASHRLMLRAGMIKQASAGIYSWLPLGFKILRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQSADLW ESGRYD YG EMLR+ DR+D+ M+YGPT+EE++TDIFR+
Sbjct: 61  QVRAGHIPVLMPTLQSADLWRESGRYDDYGAEMLRIKDRHDRDMLYGPTNEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT + + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKDDALHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D  +     D+ 
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSAITDLSLGDRVVDYA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +IV +WT PYA T + H+  L+D++PE +R ++RGIEVG IFYFGTKYS PM A
Sbjct: 241 SRAECAAIVTEWTTPYARTDETHDAALYDAIPEARRRASRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R+V A+IE++HD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 NVQGPDGKSVPVHMGSHGIGVSRLVGAIIEANHDDKGIIWPEGVTPFHAGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE IYA L+ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE   
Sbjct: 361 ADAACEAIYASLTALGMEPLYDDRDERAGGKFATMDLIGLPWRITVGPRGLKNGVVEFTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN--RPVL 449
           R TGI E++  EE +      ++ +  RP L
Sbjct: 421 RRTGISEELPPEEAVAKLVQIYAGHVLRPSL 451


>gi|126463194|ref|YP_001044308.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
 gi|221640237|ref|YP_002526499.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
 gi|166980147|sp|A3PMH0|SYP_RHOS1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782913|sp|B9KLX3|SYP_RHOSK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|126104858|gb|ABN77536.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
 gi|221161018|gb|ACM01998.1| Prolyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
          Length = 445

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 239/443 (53%), Positives = 313/443 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQQAAGIYSWLPLGFKVLKRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQ ADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QIRAGHIPLLMPTLQPADLWRESGRYDDYGEEMLRITDRHKRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDL  E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLDYESAIHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA SGPIGGD +HEF+VLA TGE++VF      D        ++D
Sbjct: 181 YLRTYERMGLQAIPMRAASGPIGGDNTHEFLVLASTGESEVFYDAAITDLKFGDRVVNYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D     +IV++WTAPYA T + H+E +F  +PE +R S+RGIEVG IFYFGTKYS PM A
Sbjct: 241 DRAECEAIVKEWTAPYARTDETHDEAVFGQIPEERRRSSRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T   ADG    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 TVVTADGSRVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHAGIVNLKQGDSS 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  LS  G +  +DD  E+ G++FA  DL+G P ++ VG + +S  KVE+ +
Sbjct: 361 TDLACEALYRDLSARGLEPLYDDRDERAGAKFATMDLIGLPWRITVGPRGISAGKVELTN 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG  E+MS    ++  +  ++
Sbjct: 421 RRTGESEEMSSGAAVDRLAQIYA 443


>gi|40063567|gb|AAR38356.1| prolyl-tRNA synthetase [uncultured marine bacterium 582]
          Length = 445

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 224/438 (51%), Positives = 308/438 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P+L+ENP DA+I SH+LMLR GMI Q S GIYSWLP+G K L  +  I+ EE
Sbjct: 1   MRLSRYFMPVLKENPVDAQIVSHRLMLRAGMIKQSSAGIYSWLPMGFKVLKKIEDIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G + M +PT+QSADLW ESGRYD++G EMLR+ DR+D+ M++ PT EE++TDIFR+
Sbjct: 61  QQRAGHMPMLMPTIQSADLWRESGRYDAFGDEMLRIKDRHDRDMLFTPTAEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYQIQWKFRDEIRPRFGVMRGREFYMKDGYNFDLTKEAALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SG +GGD +HEF+VLA+TGE++VF      D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGAMGGDNTHEFLVLAETGESEVFYDSAVTDLTFGDRAIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T  YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS  ++A
Sbjct: 241 SVAQCQGVLEEFTTKYARTDETHDEALFNQIPEERRRVARGIEVGQIFYFGTKYSEALNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T     G    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D+ 
Sbjct: 301 TVDDGQGGKTPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDEA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +Y+ L+  G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDGLYSALTNAGLEPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVEVTS 420

Query: 421 RLTGIREDMSLEEVINYA 438
           R +G+ E+M+ E  +   
Sbjct: 421 RRSGVSEEMTPEAAVAKV 438


>gi|163745976|ref|ZP_02153335.1| prolyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
 gi|161380721|gb|EDQ05131.1| prolyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
          Length = 446

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 234/443 (52%), Positives = 314/443 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q S GIYSWLPLG K L  V  I+ +E
Sbjct: 1   MRLSQYFLPVLKENPAEAQIVSHRLMLRAGMIKQSSAGIYSWLPLGYKVLRKVEEIVHQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD+YG EMLR+ DR D+ M+YGPT+EE++TDIFRS
Sbjct: 61  QQRVGHIPMLMPTLQSADLWKESGRYDAYGPEMLRIRDRQDRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF   +  D    +   D  
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSEITDLTFGNREIDPS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +  ++++++T+ YA T + H+ +LF  +PE ++ +ARGIEVG IFYFGTKYS  M+A
Sbjct: 241 DHDACRAVLDEFTSRYARTDETHDPELFAKVPEERQRTARGIEVGQIFYFGTKYSDAMNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 KVQGPDGKQVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHAGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  L  +G D  +DD     G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEALYKSLKALGLDPLYDDRKGGAGMKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG  E++  E+ +   +  ++
Sbjct: 421 RRTGESEELPPEQAVEKLAKIYA 443


>gi|294677986|ref|YP_003578601.1| prolyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
 gi|294476806|gb|ADE86194.1| prolyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
          Length = 446

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 231/446 (51%), Positives = 311/446 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPAEAQIVSHRLMLRAGMIKQQAAGIYSWLPLGFKVLKRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQ ADLW ESGRYD YG+EMLR+ DR+++ M+YGPT+EE++TDIFR+
Sbjct: 61  QIRAGHIPLLMPTLQPADLWRESGRYDDYGQEMLRIKDRHEREMLYGPTNEEMITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEVRPRFGVMRGREFYMKDGYNFDLTREDALHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL +IPMRA SGPIGGD +HEF+VLA TGE++VF      D  +     D+D
Sbjct: 181 YLRTYERMGLTAIPMRAASGPIGGDNTHEFLVLAQTGESEVFYDAQVPDLKLGDRAVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   + +I +++T  YA T + H+E +F+ +PE +R   RGIEVG IFYFGTKYS  M A
Sbjct: 241 DRDQVAAICQEFTTLYARTDETHDEAVFNQIPEARRCVGRGIEVGQIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T    DG    V+MGS+GIG  R++ A+IE++HD +GIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVVTPDGTRVPVEMGSHGIGVSRLLGALIEANHDERGIIWPEGVTPFHVGIVNLKQGDGA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC  IY  L   G D  +DD  E+ G++FA  DL+G P ++ VG + ++   VE+  
Sbjct: 361 TDAACAGIYKALVAKGLDPLYDDRDERAGAKFATMDLIGLPWRITVGPRGLAGGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R TG  E+MS E  ++  +  ++ +R
Sbjct: 421 RRTGESEEMSAEAAVDRIAQIYAAHR 446


>gi|77464352|ref|YP_353856.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1]
 gi|114152244|sp|Q3IZS9|SYP_RHOS4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|77388770|gb|ABA79955.1| Prolyl-tRNA synthetase, class IIa [Rhodobacter sphaeroides 2.4.1]
          Length = 445

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 238/443 (53%), Positives = 312/443 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQQAAGIYSWLPLGFKVLKRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQ ADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QIRAGHIPLLMPTLQPADLWRESGRYDDYGEEMLRITDRHKRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDL  E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLDYESAIHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA SGPIGGD +HEF+VLA TGE++VF      D        ++D
Sbjct: 181 YLRTYERMGLQAIPMRAASGPIGGDNTHEFLVLASTGESEVFYDAAITDLKFGDRVVNYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D     +IV++WTAPYA T + H+E +F  +PE +R S+RGIEVG IFYFGTKYS PM A
Sbjct: 241 DRAECEAIVKEWTAPYARTDETHDEAVFGQIPEERRRSSRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               ADG    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 NVVTADGSRVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHAGIVNLKQGDSS 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  LS  G +  +DD  E+ G++FA  DL+G P ++ VG + +S  KVE+ +
Sbjct: 361 TDLACEALYRDLSARGLEPLYDDRDERAGAKFATMDLIGLPWRITVGPRGISAGKVELTN 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG  E+MS    ++  +  ++
Sbjct: 421 RRTGESEEMSSGAAVDRLAQIYA 443


>gi|119384044|ref|YP_915100.1| prolyl-tRNA synthetase [Paracoccus denitrificans PD1222]
 gi|152112938|sp|A1B1L0|SYP_PARDP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119373811|gb|ABL69404.1| prolyl-tRNA synthetase [Paracoccus denitrificans PD1222]
          Length = 450

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 233/440 (52%), Positives = 316/440 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P+L+E+P++A+I SH+LMLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFMPVLKEDPKEAQIVSHRLMLRAGMIKQQAAGIYSWLPLGYKVLRRIEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD YG+EMLR+ DR+ + ++YGPT+EE++TDIFRS
Sbjct: 61  QARAGHIAMLMPTLQSADLWRESGRYDDYGEEMLRIKDRHKRDLLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y +Q KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVNSYKDLPLTLYHVQWKFRDEIRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF   +  D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSEITDLKFGDRRIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+    +++E++T+ YA T + H+  LF+ +P+ +R  ARGIEVG IFYFGTKYS PM A
Sbjct: 241 DVAQCRAVLEEFTSRYARTDETHDAALFEQIPKERRRVARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG    V MGS+GIG  R++ A+IE+SHD +GIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVVGPDGSRVPVHMGSHGIGVSRLLGAIIEASHDDRGIIWPEGVTPFHVGIVNLKQGDAS 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +YA L   G D  +DD  E+ G++FA  DL+G P ++ VG + ++ +KVE+  
Sbjct: 361 TDGACEALYAELKAQGLDALYDDRDERAGAKFATMDLVGLPWRITVGPRGLAANKVELTS 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG   +MS +E +     
Sbjct: 421 RRTGESVEMSPQEAVVRLRE 440


>gi|149201764|ref|ZP_01878738.1| prolyl-tRNA synthetase [Roseovarius sp. TM1035]
 gi|149144812|gb|EDM32841.1| prolyl-tRNA synthetase [Roseovarius sp. TM1035]
          Length = 451

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 240/451 (53%), Positives = 320/451 (70%), Gaps = 2/451 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+IASH+LMLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIASHRLMLRAGMIKQASAGIYSWLPLGFKILRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQSADLW ESGRYD YG EMLR+ DR+D+ M+YGPT+EE++TDIFR+
Sbjct: 61  QVRAGHIPVLMPTLQSADLWRESGRYDDYGAEMLRIKDRHDRDMLYGPTNEELITDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D  +     D+ 
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSAITDLRLGGRVVDYA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +IV +WT PYA T + H+  L++++PE +R ++RGIEVG IFYFGTKYS PM A
Sbjct: 241 SRAECEAIVTEWTTPYARTDETHDAALYEAIPEARRRASRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R++ A+IE++HD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 NVQGPDGKSVPVHMGSHGIGVSRLIGAIIEANHDDKGIIWPEGVTPFHAGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +YA L  +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEALYASLVALGMEPLYDDRDERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN--RPVL 449
           R TGI E++  E+ +   +  ++ +  RP L
Sbjct: 421 RRTGISEELPPEQAVEKLAQIYAGHVLRPSL 451


>gi|254474756|ref|ZP_05088142.1| prolyl-tRNA synthetase [Ruegeria sp. R11]
 gi|214028999|gb|EEB69834.1| prolyl-tRNA synthetase [Ruegeria sp. R11]
          Length = 450

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 228/446 (51%), Positives = 312/446 (69%), Gaps = 1/446 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRYMLRAGMIKQSAAGIYSWLPLGFKVLKKIEGIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M + T+Q ADLW ESGRYD YG+EMLR+ DR+D+ M++GPT+EE++TDIFR+
Sbjct: 61  QMRAGHIPMLMSTMQPADLWRESGRYDDYGQEMLRIKDRHDRDMLFGPTNEEMITDIFRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQ+Q KFRDE+RPRFGVMR REF MKD Y+FDL+ E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTMYQVQWKFRDEIRPRFGVMRGREFYMKDGYNFDLSKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF      D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSAVTDLTFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T+ YA T + H+E LF+ +PE++R  ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVEQCQGVLEEFTSKYARTDETHDEALFNEIPEDRRRVARGIEVGQIFYFGTKYSEAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  DG+   V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D+ 
Sbjct: 301 KVQTPDGEV-PVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDEA 359

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  L   G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 360 ADGACEDLYKALVAAGLDPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 419

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R TG  E+++ E  +      ++N+R
Sbjct: 420 RRTGESEELAPEAAVAKIIEIYANHR 445


>gi|315122709|ref|YP_004063198.1| prolyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496111|gb|ADR52710.1| prolyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 453

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 356/442 (80%), Positives = 398/442 (90%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+RSKYFLP +QENP+DAEI SHK+MLRTGMI QHSKG+YSWLPLG KAL  VNAIIREE
Sbjct: 1   MKRSKYFLPAMQENPKDAEIISHKMMLRTGMISQHSKGMYSWLPLGNKALSKVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA+EMS PTLQSADLW+ESGRY+SYGKEMLR+ DRNDK+M+YGPT+EE+MTDIFRS
Sbjct: 61  QDRIGALEMSNPTLQSADLWIESGRYESYGKEMLRIVDRNDKSMLYGPTNEEMMTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+KSYR+LP   YQ+QLKFRDELRPRFG MRSREFLMKDAYSFDLT E S HSYNKMFVS
Sbjct: 121 HVKSYRDLPLILYQMQLKFRDELRPRFGTMRSREFLMKDAYSFDLTFEDSVHSYNKMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRIFHRLGLKSIPMRAESGPIGG LSHEFIVL++TGETQ+FCSKDFM+FPIPSENTDFD
Sbjct: 181 YLRIFHRLGLKSIPMRAESGPIGGSLSHEFIVLSNTGETQLFCSKDFMNFPIPSENTDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           DI+SL  IV QWT PYAATSDVHNEKLF SL E  R+ ARGIEVGHIF+FGTKYS PMSA
Sbjct: 241 DIVSLKDIVRQWTTPYAATSDVHNEKLFHSLSEEDRIVARGIEVGHIFHFGTKYSHPMSA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           TF+GADGK HYVQMGSYGIG MRVVAA+IESSHD +GIIWPDSV+PF ISLIN+K HDQ 
Sbjct: 301 TFQGADGKKHYVQMGSYGIGPMRVVAAIIESSHDAQGIIWPDSVSPFHISLINLKIHDQA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  A +KIY +LS+ GCDVF DD+ EQ GS+FA+ADLLGFPLQ+I+GSKF+SDSKVEIK+
Sbjct: 361 CCSASDKIYTQLSQAGCDVFLDDVDEQAGSKFALADLLGFPLQIIIGSKFISDSKVEIKN 420

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R TG +E MSLEEV+NYAS+RF
Sbjct: 421 RSTGTKEYMSLEEVVNYASNRF 442


>gi|89053551|ref|YP_509002.1| prolyl-tRNA synthetase [Jannaschia sp. CCS1]
 gi|114152201|sp|Q28TI5|SYP_JANSC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|88863100|gb|ABD53977.1| prolyl-tRNA synthetase [Jannaschia sp. CCS1]
          Length = 452

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 223/448 (49%), Positives = 315/448 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+LMLR GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIVSHRLMLRAGMIKQASAGIYSWLPLGYKVLKRIERIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW +SGR+D+YG EMLRL DR+D+ M+YGPT+EE++TD+  +
Sbjct: 61  QIRAGHIPMLMPTLQSADLWQKSGRFDAYGPEMLRLKDRHDRDMLYGPTNEEMITDMVGT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 FVTSYKSLPLTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEAALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF   +  D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDYTHEFLVLADTGESEVFYDAEITDLKFGDREIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+   +++++++T+ YA T + H+E  F ++P +++ SARGIEVG IFYFGT+YS  + A
Sbjct: 241 DVAQCDAVLQEFTSRYARTDETHDEAEFAAIPGDRQRSARGIEVGQIFYFGTEYSEKLGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  +G+   + MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 HVQNDEGERVPLHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +   L   G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEALETALENAGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPV 448
           R TG  E+++ +  +   +  ++ ++PV
Sbjct: 421 RRTGESEELTPDAAVARVAEVYAAHKPV 448


>gi|148555262|ref|YP_001262844.1| prolyl-tRNA synthetase [Sphingomonas wittichii RW1]
 gi|166980160|sp|A5V8U0|SYP_SPHWW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148500452|gb|ABQ68706.1| prolyl-tRNA synthetase [Sphingomonas wittichii RW1]
          Length = 437

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 237/439 (53%), Positives = 319/439 (72%), Gaps = 3/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FLP+++E+P DA+I SHKLMLR GMI Q + GIY+WLPLG + L  +  I+REE
Sbjct: 1   MRLSRHFLPVMKESPADAQIVSHKLMLRAGMIRQTAAGIYAWLPLGHRVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GAIE+ +PT+QSADLW ESGRYD+YG EMLR+ DR+D+ M++GPT+EE++T IFR 
Sbjct: 61  QDRAGAIELLMPTMQSADLWRESGRYDAYGPEMLRIKDRHDREMLFGPTNEEMITAIFRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + +SYR+LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  EG++HSYN+MFV+
Sbjct: 121 NARSYRDLPRILYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDIEGARHSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GL +IPM+A++GPIGGDLSHEFIVLA TGE++VF   +       + + D D
Sbjct: 181 YLRTFRRMGLSAIPMQADTGPIGGDLSHEFIVLAPTGESEVFYHTN--WEVERALDVDVD 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+ +L   V+  TA YAAT +  +     +  +     +RGIEVGHIFYFGTKYS  M  
Sbjct: 239 DVAALQGFVDGLTADYAATDEKRDPAREAAAGD-SLKQSRGIEVGHIFYFGTKYSAAMGM 297

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DG+    QMGSYGIG  R++ A+IE+SHD  GI+WPD+VAP+ + LIN++A D  
Sbjct: 298 TVQGPDGQPVTPQMGSYGIGVSRLMGAIIEASHDDAGIVWPDAVAPYTVGLINMRADDAR 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  A + +YA+L   G +  +DD  E+ G++FA  DL+G P Q++VG K +    VE+K 
Sbjct: 358 CAAAADDLYAKLEAAGIETLYDDRDERGGAKFATMDLIGLPWQIVVGPKGLDKGVVELKR 417

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG + ++S+E+ I   +
Sbjct: 418 RATGEKVELSVEDAIARIA 436


>gi|302383072|ref|YP_003818895.1| prolyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193700|gb|ADL01272.1| prolyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
          Length = 437

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 239/439 (54%), Positives = 322/439 (73%), Gaps = 4/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP L+E P DA+I SH+LMLR GMI Q + GIY+WLPLG + L+ +  I+REE
Sbjct: 1   MRLSRYFLPTLKEAPSDAQIVSHQLMLRAGMIKQEAAGIYAWLPLGLRVLNRIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PTLQ ADLW ESGRYD+YG EMLR+ DR+++ ++YGPT+EE++TDIFR 
Sbjct: 61  QERAGAVELLMPTLQLADLWRESGRYDAYGPEMLRITDRHERELLYGPTNEEMITDIFRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   + IQ KFRDE RPRFGVMR REFLMKDAYSFD+    ++ +YN+MFV+
Sbjct: 121 FVKSYKALPLNLFHIQWKFRDERRPRFGVMRGREFLMKDAYSFDIDEASARRAYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F R+GLK++PMRA++GPIGGDLSHEFIVLADTGE+QVFC K  ++ P P  + D++
Sbjct: 181 YLNTFARMGLKAVPMRADTGPIGGDLSHEFIVLADTGESQVFCDKQLVEMPAPGADVDWN 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP-ENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D+ ++   V+  T+ YAAT ++H+   F+S   +  R++ARGIEVGHIFYFGTKYS PM 
Sbjct: 241 DLQAI---VDGRTSLYAATEEMHDAAQFESQTADGDRLTARGIEVGHIFYFGTKYSAPMK 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A   G DG+D  V MGSYG+G  R++ A+IE+SHD  GIIWPD+VAPF + +IN++A+D 
Sbjct: 298 AKVAGPDGQDTEVHMGSYGVGVSRLLGAIIEASHDDAGIIWPDAVAPFDVVVINLRANDP 357

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +ACE     L   G  V +DD  E+ G +FA ADL+G P Q+ +G K V++  VE+K
Sbjct: 358 GVCEACEAAVEALEAAGKSVLYDDTDERPGGKFATADLIGIPWQLTIGPKGVAEGVVELK 417

Query: 420 HRLTGIREDMSLEEVINYA 438
            R +G +  + L++ +   
Sbjct: 418 RRASGEKSTLPLDQAMERI 436


>gi|304319826|ref|YP_003853469.1| prolyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
 gi|303298729|gb|ADM08328.1| prolyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
          Length = 446

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 227/442 (51%), Positives = 310/442 (70%), Gaps = 3/442 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ +LP+L+E P +A IASH+LMLR+GM+ Q + GIY+WLPLG K L  V AI+REE
Sbjct: 1   MKLSRTYLPLLKETPAEAVIASHRLMLRSGMVRQQAAGIYAWLPLGLKVLKKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G  E+ +PT+Q A LW +SGRYD+YG EMLRL DR+ + M+YGPT+EE++T++ R+
Sbjct: 61  QERAGVAELLMPTIQPASLWHQSGRYDAYGPEMLRLKDRHGRDMLYGPTNEEMITELVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T + IQ KFRDE+RPRFGVMR REFLMKDAYSFDL+PE ++ SY + F +
Sbjct: 121 GIKSYKELPKTLFHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLSPEAARRSYLRFFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+K+IP+RA++GPIGG LSHEF+VLA+TGE++VF +K  ++   P   T  D
Sbjct: 181 YLRTFARLGVKAIPVRADTGPIGGKLSHEFVVLAETGESEVFTAKGLVEKTPPP--TSLD 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L  +  +WT  YAAT ++H+E  F +LPE++R+ ARGIEVGHIFYFGTKYS PM  
Sbjct: 239 YDGDLEPLFAEWTGTYAATDEMHDEAAFLALPEDQRLQARGIEVGHIFYFGTKYSEPMQF 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DG+      GSYGIG  R+V A+IE+ HD +G  WP  VAP+++ L+N+K     
Sbjct: 299 AVEGPDGRAFVEM-GSYGIGVSRLVGALIEAHHDDQGCRWPVPVAPYEVGLVNLKTGHDG 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC ++Y      G DV  DD G++ G +FA  DL+G PL V +G + V   + E+K 
Sbjct: 358 TDGACHRLYDEAVAAGLDVLLDDSGDRAGEKFARMDLIGLPLIVTIGPRGVEAGQAEVKD 417

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R TG ++++ L  +++Y     
Sbjct: 418 RRTGAKQEVPLTGLVDYLRSAI 439


>gi|146276453|ref|YP_001166612.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
 gi|166980148|sp|A4WPJ3|SYP_RHOS5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145554694|gb|ABP69307.1| prolyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
          Length = 445

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 236/443 (53%), Positives = 315/443 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q + GIYSWLPLG KAL  V  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPSEAQIVSHRFMLRAGMIKQQAAGIYSWLPLGFKALKRVEQIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQ ADLW ESGRYD YG+EMLR+ DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QIRAGHIPLLMPTLQPADLWRESGRYDDYGEEMLRITDRHKRDMLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y +Q KFRDE+RPRFGVMR REFLMKD Y+FDL  + + H+YN+  VS
Sbjct: 121 HVNSYKDLPLTLYHVQWKFRDEIRPRFGVMRGREFLMKDGYNFDLDFDSAIHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA SGPIGGD +HEF+VLA TGE++VF      D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRAASGPIGGDNTHEFLVLASTGESEVFYDAAITDLKFGDRVVDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +IV++WT PYA T + H+E +F+++PE +R ++RGIEVG IFYFGTKYS PM A
Sbjct: 241 SREECEAIVKEWTTPYARTDETHDEAIFNAIPEERRRTSRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T   ADG    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVVTADGARVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDSS 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y  LS  G +  +DD  E+ G++FA  DL+G P ++ VG + ++  KVE+ +
Sbjct: 361 TDLACEALYRDLSAKGLEPLYDDRDERAGAKFATMDLIGLPWRITVGPRGIAAGKVELTN 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG  E+MS    ++  +  ++
Sbjct: 421 RRTGESEEMSSGAAVDRLAQIYA 443


>gi|254463517|ref|ZP_05076933.1| prolyl-tRNA synthetase [Rhodobacterales bacterium HTCC2083]
 gi|206680106|gb|EDZ44593.1| prolyl-tRNA synthetase [Rhodobacteraceae bacterium HTCC2083]
          Length = 445

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 231/439 (52%), Positives = 309/439 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP DA+I SH+LMLR GMI Q S GIYSWLP+G K L  +  I+ EE
Sbjct: 1   MRLSRYFLPILKENPADAQIVSHRLMLRAGMIKQSSAGIYSWLPMGFKVLRKIENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW +SGRYD+YG EMLR+ DR+D+ M+YGPT+EE++TD+  +
Sbjct: 61  QQRAGHIPMLMPTLQSADLWRKSGRYDAYGPEMLRIKDRHDREMLYGPTNEELITDMVAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP T Y +Q KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  V+
Sbjct: 121 FVGSYKSLPLTLYHVQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF   +  D        DFD
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDYTHEFLVLADTGESEVFYDSEITDLSFGDRTIDFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +  S++E++T+ YA T + H E  F+ LPE +R  ARGIEVG IFYFGT+YS  M A
Sbjct: 241 DKAACQSVMEEFTSRYARTDETHEEAAFNELPEERRRVARGIEVGQIFYFGTEYSEKMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  DG+   + MGS+GIG  R++ A+IE+SHD  GIIWP+ V PF   ++N+K  D  
Sbjct: 301 MVQNEDGQRVPLHMGSHGIGVSRLLGAIIEASHDDNGIIWPEGVTPFHCGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +Y  L+ +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDALYDSLTALGLDPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVEVTS 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG  E+M+ E  I   +
Sbjct: 421 RRTGESEEMTPELAIAKIA 439


>gi|126735142|ref|ZP_01750888.1| prolyl-tRNA synthetase [Roseobacter sp. CCS2]
 gi|126715697|gb|EBA12562.1| prolyl-tRNA synthetase [Roseobacter sp. CCS2]
          Length = 446

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 226/440 (51%), Positives = 312/440 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E PR+A+I SH+ ML+ GMI Q S GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPREAQIVSHRYMLQAGMIKQASAGIYSWLPLGFKVLRKIENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PT+QSADLW ESGRYD+YG+EMLR+ DR  + M++ PT EE++TDIFR+
Sbjct: 61  QARAGHIAIQMPTIQSADLWRESGRYDAYGEEMLRIKDRGGRDMLFTPTAEELVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVNSYKDLPLTLYQIQWKFRDEVRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF   +  D        D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSEITDLKFGDRQIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +  +++E++T+ YA T + H+E LFD++PE ++ +ARGIEVG IFYFGTKYS  M A
Sbjct: 241 DKAACQAVLEEFTSRYARTDETHDEALFDAIPEERKRTARGIEVGQIFYFGTKYSESMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 G    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+++ D  
Sbjct: 301 LVDDGQGGKVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGILNMRSGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +YA L+ +G +  +DD  E+ G++F   D++G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEALYASLTALGLEPLYDDRDERAGAKFGTMDMIGLPWRITVGPRGLKNGVVEVTC 420

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG  E+M  E+ +   + 
Sbjct: 421 RRTGESEEMPPEDAVAKIAK 440


>gi|121602198|ref|YP_989086.1| prolyl-tRNA synthetase [Bartonella bacilliformis KC583]
 gi|152112216|sp|A1USY3|SYP_BARBK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120614375|gb|ABM44976.1| prolyl-tRNA synthetase [Bartonella bacilliformis KC583]
          Length = 441

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 258/439 (58%), Positives = 328/439 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH LMLR G+I Q + GIYSWLPLG+K LD V  IIREE
Sbjct: 1   MRLSQYFLPILKENPKEAEIISHCLMLRAGIIRQQTSGIYSWLPLGKKVLDKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+S+PT+QSADLW ESGRYD YG EMLR+ DR ++ ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGALEISMPTIQSADLWRESGRYDDYGLEMLRIKDRQERDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   YQIQ KFRDE+RPRFGVMRSREFLMKD YSFDL  E +K SYN+MF++
Sbjct: 121 YVRSYKDLPLNLYQIQWKFRDEIRPRFGVMRSREFLMKDGYSFDLDYESAKTSYNRMFIA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK IPMRA++GPIGG+LSHEFI+LA TGE+ VFC K F++   P  + DF 
Sbjct: 181 YLRTFSRIGLKVIPMRADTGPIGGELSHEFIILAKTGESAVFCDKRFLEMTAPPVSVDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D + L  IV+QWTA YA T ++HN + +  + ++ ++SARGIEVGHIFYFGTKYS PM A
Sbjct: 241 DNVVLTDIVKQWTALYATTEEMHNAEEWAQICKSNQLSARGIEVGHIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK++ V MGSYGIG  R+VAA IE+SHD  GIIWP  + PF   +IN K+ +  
Sbjct: 301 KVMGRDGKEYPVFMGSYGIGPSRLVAAAIEASHDENGIIWPKPITPFDFGIINTKSDNAK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y  L   G D   DD  E+ G++FA  DL+G P Q+IVG K  +  +VEIK 
Sbjct: 361 CYGMCETLYQGLVNAGFDPLLDDRNERPGAKFATMDLIGLPTQIIVGPKSAAQDEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG +E +++E  +N  S
Sbjct: 421 RKTGTKEVLTVEAALNRLS 439


>gi|114769540|ref|ZP_01447166.1| prolyl-tRNA synthetase [alpha proteobacterium HTCC2255]
 gi|114550457|gb|EAU53338.1| prolyl-tRNA synthetase [alpha proteobacterium HTCC2255]
          Length = 446

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 231/444 (52%), Positives = 318/444 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYFLPIL+ENP DA+IASH+LMLR GMI Q   GIYSWLP+G K L  +  I+ +E
Sbjct: 1   MRLSKYFLPILKENPSDAQIASHRLMLRAGMIRQAQSGIYSWLPMGYKVLRKLENIVHDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G   M +PT+QSADLW ESGRYD YGKEMLR+ DR+ + M++GPT+EE++TDIFR+
Sbjct: 61  QIRAGHNPMLMPTIQSADLWRESGRYDDYGKEMLRITDRHGRDMLFGPTNEELITDIFRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDL  E + HSYN+  VS
Sbjct: 121 SVKSYKDLPMTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLNKEAAMHSYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+G+K+IPMRA+SGPIGG+ +HEF+VLADTGE++VF  ++ +D  +  +  D++
Sbjct: 181 YLRTYERMGMKAIPMRADSGPIGGEDTHEFLVLADTGESEVFFDRNILDLSLGDKEIDYN 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +     SI ++WT PYA T + HN +LF  +P+ +++++RGIEVG IFYFGTKYS  M+A
Sbjct: 241 NWDECASIFKEWTTPYARTDETHNPELFAKIPDERQMTSRGIEVGQIFYFGTKYSESMNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                +  +  V MGS+GIG  R+V A+IE+SHD  GIIWP++V+PF + ++N+K  D  
Sbjct: 301 KVSTPNDGEIPVHMGSHGIGVSRMVGAIIEASHDENGIIWPEAVSPFGVGIVNLKQGDDQ 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE +Y   S +G D  +DD  E+ G++FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADLACENLYKSASLLGIDPLYDDRSERAGAKFASMDLIGLPWRITVGPRGLKNGVVELTC 420

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R TG+ E++  E  +   +  +S 
Sbjct: 421 RRTGVSEELPPELAMEKLAKVYSK 444


>gi|83949530|ref|ZP_00958263.1| prolyl-tRNA synthetase [Roseovarius nubinhibens ISM]
 gi|83837429|gb|EAP76725.1| prolyl-tRNA synthetase [Roseovarius nubinhibens ISM]
          Length = 452

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 242/443 (54%), Positives = 321/443 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+LMLR GMI Q S GIYSWLPLG K L N+  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPSEAQIVSHRLMLRAGMIKQSSAGIYSWLPLGYKVLRNIETIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I M +PTLQSADLW ESGRYD+YG EMLR+ DR D+ M++GPT+EE++TDIFRS
Sbjct: 61  QQRVGHIPMLMPTLQSADLWRESGRYDAYGPEMLRIRDRQDRDMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLA+TGE++VF   +  D        D D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLAETGESEVFYDSEITDLTFGEREIDHD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              +  +++E++T+ YA T + H+E LF+ +PE +R  ARGIEVG IFYFGTKYS PM A
Sbjct: 241 SHEACQAVLEEFTSRYARTDETHDEALFNQIPEERRRVARGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T +G DGK   V MGS+GIG  R++ A+IE+SHD KGIIWP++VAPF + ++N+K  D  
Sbjct: 301 TVQGPDGKPVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEAVAPFHVGIVNLKQGDDE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +YA+++ +G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDALYAQVAALGLEPLYDDRNERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG  E++S E  I      FS
Sbjct: 421 RRTGESEELSPEAAIAKLKEHFS 443


>gi|163733470|ref|ZP_02140913.1| prolyl-tRNA synthetase [Roseobacter litoralis Och 149]
 gi|161393258|gb|EDQ17584.1| prolyl-tRNA synthetase [Roseobacter litoralis Och 149]
          Length = 451

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 229/445 (51%), Positives = 313/445 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++YF+P+L+ENP +A+I SH+LMLR GMI Q++ GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLTRYFMPVLRENPAEAQIVSHRLMLRAGMIKQNAAGIYSWLPLGFKVLRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G + M +PT+QSADLW ESGRYD+YG EMLR+ DR D+ M++GPT+EE++TDIFRS
Sbjct: 61  QIRAGHVPMLMPTMQSADLWRESGRYDAYGPEMLRIRDRQDRDMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVSSYKDLPLTLYHIQWKFRDEMRPRFGVMRGREFFMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D      + D+D
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSAVTDLTFGDRDIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     ++E++T  YA T + H++ LFD++P  ++  ARGIEVG IFYFGTKYS  M A
Sbjct: 241 SVAQCQGVMEEFTNLYARTDETHDQALFDAIPAERQRKARGIEVGQIFYFGTKYSDAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +G DGK   V MGS+GIG  R+V A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 KVQGPDGKPTAVHMGSHGIGVSRLVGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +Y  L  +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACDALYTSLRALGLDPLYDDRKERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R +G   +M  E+ +   +  ++ +
Sbjct: 421 RKSGESVEMPPEQAVEKIASIYATH 445


>gi|258542706|ref|YP_003188139.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633784|dbj|BAH99759.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636843|dbj|BAI02812.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639896|dbj|BAI05858.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642952|dbj|BAI08907.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646007|dbj|BAI11955.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649060|dbj|BAI15001.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652047|dbj|BAI17981.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655104|dbj|BAI21031.1| prolyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-12]
          Length = 438

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 220/438 (50%), Positives = 309/438 (70%), Gaps = 3/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+ENP +A+I SH+LMLR G+I Q + GIY+WLP G K L N++ I+REE
Sbjct: 1   MRLSRSFLPTLKENPAEAQIVSHRLMLRAGLIRQTASGIYAWLPAGLKVLRNISQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA E+ +PTLQSADLW  SGRYD+YG EMLR+ DR+ + ++YGPT+EE++TD+F  
Sbjct: 61  QDRVGAQEVLMPTLQSADLWKRSGRYDAYGPEMLRIQDRHKRELLYGPTNEEMITDLFGQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E +  +Y +M ++
Sbjct: 121 TVKSYKDLPQVLYHIQWKFRDEMRPRFGVMRGREFLMKDAYSFDLDYESAVATYRRMLLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG++++PMRA++GPIGG+LSHEF++LA TGE+ VF      +     E  D +
Sbjct: 181 YLRTFQRLGVRAVPMRADTGPIGGELSHEFLILAPTGESGVFYDAALEEQDWLDEPVDTN 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             ++L +   + T PYAAT ++H+E  + ++P  ++   RG+EVGHIFYFG KY+  M  
Sbjct: 241 SPVALEAFFNRVTTPYAATDEMHDEAGWQAVPAERQREGRGVEVGHIFYFGDKYTRSMDV 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  G DG   Y +MGSYGIG  R+  A+IE+ HD  GIIWPD+VAPF+  ++N+K  D++
Sbjct: 301 SVSGPDGNQLYPEMGSYGIGVSRLAGAIIEACHDDNGIIWPDAVAPFRAVILNLKNGDEL 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE+IY+   +      +DD  E+ G +FA ADL+G P Q++VG +   + KVE+K 
Sbjct: 361 CDAICERIYSTNEEA---FLYDDRAERAGVKFADADLMGHPWQIVVGPRGAKEGKVELKR 417

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG R ++S+++ +   
Sbjct: 418 RATGERHEVSVDDALALV 435


>gi|329114694|ref|ZP_08243453.1| Prolyl-tRNA synthetase [Acetobacter pomorum DM001]
 gi|326696174|gb|EGE47856.1| Prolyl-tRNA synthetase [Acetobacter pomorum DM001]
          Length = 459

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 221/438 (50%), Positives = 309/438 (70%), Gaps = 3/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+ENP +A+I SH+LMLR G+I Q + GIY+WLP G K L N++ I+REE
Sbjct: 22  MRLSRSFLPTLKENPAEAQIVSHRLMLRAGLIRQTASGIYAWLPAGLKVLRNISQIVREE 81

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+R GA E+ +PTLQSADLW  SGRYD+YG EMLR+ DR+ + ++YGPT+EE++TD+F  
Sbjct: 82  QDRVGAQEVLMPTLQSADLWKRSGRYDAYGPEMLRIQDRHKRELLYGPTNEEMITDLFGQ 141

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL  E +  +Y +M ++
Sbjct: 142 TVKSYKDLPQVLYHIQWKFRDEMRPRFGVMRGREFLMKDAYSFDLDYESAVATYRRMLLA 201

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG++++PMRA++GPIGG+LSHEF++LA TGE+ VF      +     E  D +
Sbjct: 202 YLRTFQRLGVRAVPMRADTGPIGGELSHEFLILAPTGESGVFYDAALEEQDWLDEPVDTN 261

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             I+L +   + T PYAAT ++H+E  + ++P  ++   RG+EVGHIFYFG KY+  M  
Sbjct: 262 SPIALEAFFNRVTTPYAATDEMHDEAGWQAVPAERQREGRGVEVGHIFYFGDKYTRSMDV 321

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  G DG   Y +MGSYGIG  R+  A+IE+ HD  GIIWPD+VAPF+  ++N+K  D++
Sbjct: 322 SVSGPDGNQLYPEMGSYGIGVSRLAGAIIEACHDDNGIIWPDAVAPFRAVILNLKNGDEL 381

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE+IY+   +      +DD  E+ G +FA ADL+G P Q++VG +   + KVE+K 
Sbjct: 382 CDAICERIYSTNEEA---FLYDDRAERAGVKFADADLMGHPWQIVVGPRGAKEGKVELKR 438

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG R ++S+++ +   
Sbjct: 439 RATGERHEVSVDDALALV 456


>gi|695786|emb|CAA58846.1| orf5 [Zymomonas mobilis]
          Length = 443

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 232/439 (52%), Positives = 307/439 (69%), Gaps = 2/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+++E P DA+I SHKLMLR GMI Q + GIY+WLPLG + L     IIREE
Sbjct: 1   MRLSRYFLPVMKETPADAQIISHKLMLRAGMIRQTASGIYAWLPLGLRVLGRNEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA E+ +PTLQ+ADLW ESGRYD+YG EMLR  DR++  ++YGPT+EE++T + R 
Sbjct: 61  QARAGAAELLMPTLQTADLWPESGRYDAYGPEMLRFKDRHNCELLYGPTNEEMITALIRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY  L   FY IQ KFRDE+RPRFGVMR REFLMKDAYSFD+     +H+YN+MFV 
Sbjct: 121 NLQSYAILAGIFYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDIDETAGRHNYNRMFVG 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL  F RLGL++IPM+A++GPIGGDLSHEFIVLA  GE  VF   +  + P      DFD
Sbjct: 181 YLNSFSRLGLRAIPMQADTGPIGGDLSHEFIVLAPNGERHVFYHSN-WEQPTRHIEADFD 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +L SIV    + YAAT +  +  L ++   +K   +RGIEVGHIF+FGTKYS PM  
Sbjct: 240 DPKALQSIVNDHISDYAATDEKRDP-LREAQAGDKLRQSRGIEVGHIFFFGTKYSKPMGF 298

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DGK   +QMGSYGIG  R++ A+IE+SHD  GIIWP++VAP+ + LIN++  D+ 
Sbjct: 299 TLPGPDGKPIPIQMGSYGIGISRLLGAIIEASHDDNGIIWPEAVAPYHVGLINLRIDDEN 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           CR   + +Y RL   G D  +DD  E+ G++FA  DL+G P QV++G K      +E+K+
Sbjct: 359 CRAIADSLYQRLEAAGIDTLYDDRNERGGAKFATMDLIGLPWQVVIGPKGAEKGVIELKN 418

Query: 421 RLTGIREDMSLEEVINYAS 439
           R +G ++ +S+E+  N  +
Sbjct: 419 RASGEKQTISVEDAFNLLT 437


>gi|162139874|ref|YP_745105.2| prolyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
 gi|148887022|sp|Q0BSM0|SYP_GRABC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 440

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 226/441 (51%), Positives = 309/441 (70%), Gaps = 4/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +A+IASH+LMLR G+I Q + GIY+WLP G + L+ +  I+R+E
Sbjct: 1   MRLSRALIPTLKETPAEAQIASHRLMLRAGLIQQEAAGIYAWLPAGLRVLNAIANIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q   GA E+ +PT+QSADLW ESGRYD+YG EMLRL DR+++ ++YGPT+EEV+TDI+R 
Sbjct: 61  QAGIGAQEVLMPTIQSADLWRESGRYDAYGPEMLRLKDRHERDLLYGPTNEEVITDIYRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFGVMR REFLMKD YSFDL   G+  SY ++ +S
Sbjct: 121 SVKSYRELPQMAYQIQWKFRDEIRPRFGVMRGREFLMKDGYSFDLDYAGAVRSYRRIMLS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+R F RLG+K+IPM A++GPIGGDLSHEFI+LA TGE++VF    F +      + + D
Sbjct: 181 YMRTFQRLGVKAIPMLADTGPIGGDLSHEFIILAPTGESEVFYDAAFEEIDWSGASFNVD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L    +  T  YAAT + H+   +++LPE +R + RGIEVGHIFYFGTKYS  ++ 
Sbjct: 241 SDADLERFFQTITGHYAATDEKHDTAAYEALPEARRRTGRGIEVGHIFYFGTKYSKALNM 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG+  + +MGSYGIG  R+VAAVIE+SHD  GIIWPDS+APF+ +++N+K  D  
Sbjct: 301 TVAGRDGQKLHPEMGSYGIGVSRMVAAVIEASHDEAGIIWPDSIAPFRAAVLNLKNGDAA 360

Query: 361 CRDACEKIYARLSKVGCD-VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           C    E +Y    ++G     +DD  E+ G +FA ADL+G P QV++G +  +  +VE+K
Sbjct: 361 CDAMAEDVY---RRIGVRHALYDDRDERAGVKFADADLMGHPWQVVIGPRGAAAGRVELK 417

Query: 420 HRLTGIREDMSLEEVINYASH 440
            R TG R ++++E+ +     
Sbjct: 418 RRRTGERVELTVEDALARIRE 438


>gi|126728909|ref|ZP_01744724.1| prolyl-tRNA synthetase [Sagittula stellata E-37]
 gi|126710839|gb|EBA09890.1| prolyl-tRNA synthetase [Sagittula stellata E-37]
          Length = 445

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 233/445 (52%), Positives = 315/445 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+I SH+LMLR GMI Q   GIYSWLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPSEAQIVSHRLMLRAGMIKQAQAGIYSWLPLGYKVLKKIENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQSADLW ESGRY++YG+EMLR+ DR+ + M+YGPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPLLMPTLQSADLWRESGRYEAYGEEMLRITDRHGRDMLYGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 YVRSYKDLPLTLYHIQWKFRDEVRPRFGVMRGREFLMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+ GPIGGD +HEF+VLA+TGE++VF   +  D    + + D+D
Sbjct: 181 YLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGESEVFYDSEITDLKFGTRDIDYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    S++E++T+ YA T + H+E LF  +PE +R +ARGIEVG IFYFGTKYS  M+A
Sbjct: 241 SVEECQSVLEEFTSRYARTDETHDEALFGEIPEERRRTARGIEVGQIFYFGTKYSDAMNA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +   G    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   +IN+K  D  
Sbjct: 301 VVQDHSGAQVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIINLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE IY  L K G +  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEAIYLDLVKSGLEPLYDDTDERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R TG  E+M  E+ +      ++N+
Sbjct: 421 RRTGESEEMPPEQAVERIRQIYANH 445


>gi|114316122|gb|ABI62182.1| prolyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
          Length = 499

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 226/441 (51%), Positives = 309/441 (70%), Gaps = 4/441 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +A+IASH+LMLR G+I Q + GIY+WLP G + L+ +  I+R+E
Sbjct: 60  MRLSRALIPTLKETPAEAQIASHRLMLRAGLIQQEAAGIYAWLPAGLRVLNAIANIVRDE 119

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q   GA E+ +PT+QSADLW ESGRYD+YG EMLRL DR+++ ++YGPT+EEV+TDI+R 
Sbjct: 120 QAGIGAQEVLMPTIQSADLWRESGRYDAYGPEMLRLKDRHERDLLYGPTNEEVITDIYRH 179

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFGVMR REFLMKD YSFDL   G+  SY ++ +S
Sbjct: 180 SVKSYRELPQMAYQIQWKFRDEIRPRFGVMRGREFLMKDGYSFDLDYAGAVRSYRRIMLS 239

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+R F RLG+K+IPM A++GPIGGDLSHEFI+LA TGE++VF    F +      + + D
Sbjct: 240 YMRTFQRLGVKAIPMLADTGPIGGDLSHEFIILAPTGESEVFYDAAFEEIDWSGASFNVD 299

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L    +  T  YAAT + H+   +++LPE +R + RGIEVGHIFYFGTKYS  ++ 
Sbjct: 300 SDADLERFFQTITGHYAATDEKHDTAAYEALPEARRRTGRGIEVGHIFYFGTKYSKALNM 359

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG+  + +MGSYGIG  R+VAAVIE+SHD  GIIWPDS+APF+ +++N+K  D  
Sbjct: 360 TVAGRDGQKLHPEMGSYGIGVSRMVAAVIEASHDEAGIIWPDSIAPFRAAVLNLKNGDAA 419

Query: 361 CRDACEKIYARLSKVGCD-VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           C    E +Y    ++G     +DD  E+ G +FA ADL+G P QV++G +  +  +VE+K
Sbjct: 420 CDAMAEDVY---RRIGVRHALYDDRDERAGVKFADADLMGHPWQVVIGPRGAAAGRVELK 476

Query: 420 HRLTGIREDMSLEEVINYASH 440
            R TG R ++++E+ +     
Sbjct: 477 RRRTGERVELTVEDALARIRE 497


>gi|162148795|ref|YP_001603256.1| prolyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787372|emb|CAP56967.1| Prolyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 476

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 227/438 (51%), Positives = 307/438 (70%), Gaps = 3/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+ENP +A++ SH+LMLR G+I Q + GIY+WLP G + L N+  I+REE
Sbjct: 39  MRLSRGFLPTLKENPAEAQVISHRLMLRAGLIRQTAAGIYAWLPAGWRVLQNIARIVREE 98

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PT+QSA+LW  SGRYD+YG EMLR+ DR+++ ++YGPT+EE++TD+F  
Sbjct: 99  QDAIGAQELLMPTVQSAELWKRSGRYDAYGPEMLRIQDRHERELLYGPTNEEMITDLFGQ 158

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL    +  SY +M ++
Sbjct: 159 VVKSYRELPQVLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDYASAVDSYRRMMLA 218

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+++IPM A++GPIGG+LSHEF++LA TGE+ VF    F +    S+  D D
Sbjct: 219 YLRTFQRLGVRAIPMVADTGPIGGELSHEFLILAPTGESGVFFDGAFEEQDWLSDPVDID 278

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  SL++   + T+ YAAT + H+E  +  +P  +R   RGIEVGHIF+FG KY+  M  
Sbjct: 279 DRESLDAFFTRMTSFYAATDEKHDEAAWADVPAERRREGRGIEVGHIFHFGRKYTESMDI 338

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG   Y +MGSYGIG  R+VAA+IE+SHD  GIIWPDSVAPF+ +++N+K  D  
Sbjct: 339 TVSGPDGAPLYPEMGSYGIGVSRLVAAIIEASHDDNGIIWPDSVAPFRAAILNLKTGDAA 398

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE++YA          +DD GE+ G +FA ADL+G P QVIVG +   + KVE+K 
Sbjct: 399 CDAICEQVYA---AAPESFLYDDRGERAGVKFADADLMGHPWQVIVGPRGAKEGKVELKR 455

Query: 421 RLTGIREDMSLEEVINYA 438
           R  G R ++S+++ +   
Sbjct: 456 RADGARFELSVDDALARI 473


>gi|84515335|ref|ZP_01002697.1| prolyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
 gi|84510618|gb|EAQ07073.1| prolyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
          Length = 446

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 220/430 (51%), Positives = 302/430 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E PR+A+I SH+ ML+ GMI Q S GIYSWLPLG K L  +  I+ +E
Sbjct: 1   MRLSRYFLPVLKETPREAQIVSHRYMLQAGMIKQASAGIYSWLPLGFKVLRKIENIVHQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PT+QSADLW ESGRYD+YG+EMLR+ DR  + M++ PT EE++TDIFR+
Sbjct: 61  QERAGHIAIQMPTIQSADLWRESGRYDAYGEEMLRIKDRGGREMLFTPTAEELVTDIFRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T YQIQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVTSYKDLPLTLYQIQWKFRDEVRPRFGVMRGREFYMKDGYNFDLTKEDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRA+SGPIGGD +HEF+VLADTGE++VF      D        D+ 
Sbjct: 181 YLRTYERMGLQAIPMRADSGPIGGDDTHEFLVLADTGESEVFYDSQITDLKFGDRQIDYS 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +  ++++++T+ YA T + H+  LF+ +PE +R +ARGIEVG IFYFGTKYS  M A
Sbjct: 241 DHAACAAVLDEFTSRYARTDETHDAALFNQVPEERRRTARGIEVGQIFYFGTKYSDAMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 G    V MGS+GIG  R++ A+IE+SHD KGIIWP+ V PF   ++N+K  D  
Sbjct: 301 LVDDGKGGKVPVHMGSHGIGVSRLLGAIIEASHDDKGIIWPEGVTPFHCGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              AC+ +Y  L+ +G +  +DD  E+ G++F   D++G P ++ VG + + +  VE+  
Sbjct: 361 ADAACQALYDSLTALGLEPLYDDRDERAGTKFGTMDMIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMS 430
           R TG  E++ 
Sbjct: 421 RRTGESEELP 430


>gi|319407251|emb|CBI80890.1| Prolyl-tRNA synthetase [Bartonella sp. 1-1C]
          Length = 441

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 262/439 (59%), Positives = 341/439 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E+P++AE+ SH+ MLR GM+ Q + GIYSWLPLG+K LD +  IIREE
Sbjct: 1   MRLSQYFLPILKESPKEAEVISHRFMLRAGMVRQQTSGIYSWLPLGKKVLDKICKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PT+QSADLW ES RY+ YG EMLR+ DR D+ ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGALEILMPTIQSADLWRESERYNDYGLEMLRIRDRQDRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR+REFLMKDAYSFDL    +K SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEIRPRFGVMRAREFLMKDAYSFDLDYASAKISYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGG+LSHEFI+LA TGE+ +FC K F++F +PS + DF 
Sbjct: 181 YLRTFSRIGLKAIPMRADTGPIGGELSHEFIILAKTGESSIFCDKRFLEFTVPSVSIDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  IV QWT+ YAAT ++HNE+ +  +P++ ++SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKDVLADIVRQWTSLYAATEEMHNEEEWSKVPDSNKLSARGIEVGHIFHFGTKYSAPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H+V MGSYGIG  R+VAAVIESSHD  GIIWP S+APF   +IN+K  D+ 
Sbjct: 301 KVMGQDGKEHFVSMGSYGIGPSRLVAAVIESSHDEHGIIWPKSIAPFDFGIINMKPDDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y  L + G D   DD GE+ GS+FA  DL+G P+Q+I+G K  + ++VEIK 
Sbjct: 361 CSYICETLYQELIRRGFDPLLDDTGERPGSKFATMDLIGLPVQMIIGPKNATQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG+RE +++E V+N  S
Sbjct: 421 RKTGLREVLTVEAVLNRFS 439


>gi|319898898|ref|YP_004158991.1| Prolyl-tRNA synthetase [Bartonella clarridgeiae 73]
 gi|319402862|emb|CBI76413.1| Prolyl-tRNA synthetase [Bartonella clarridgeiae 73]
          Length = 442

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 255/439 (58%), Positives = 333/439 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AE+ SH+ MLR GM+ Q + GIYSWLPLG+K LD +  IIREE
Sbjct: 1   MRLSQYFLPILKENPKEAEVVSHRFMLRAGMVRQQTSGIYSWLPLGKKVLDKICKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PT+QSADLW ESGRY+ YG EMLR+ DR D+ ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGAVEILMPTIQSADLWRESGRYNDYGLEMLRIKDRQDRDLLYGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR+REFLMKDAYSFDL    +K SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEIRPRFGVMRAREFLMKDAYSFDLDYASAKTSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IP+RA++GPIGG+LSHEFI+LA+TGE+ +FC K F++F +P  + DF 
Sbjct: 181 YLRTFSRIGLKAIPVRADTGPIGGELSHEFIILAETGESSIFCDKRFLEFTVPPISIDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  IV QWT+ YAAT ++HNE+ +  +  N +++ARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKDILADIVRQWTSLYAATEEMHNEEEWSKVSTNNKLAARGIEVGHIFHFGTKYSAPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H + MGSYGIG  R+VAA+IESSHD  GIIWP  + PF   +IN+K  D+ 
Sbjct: 301 KVMGQDGKEHLISMGSYGIGPSRLVAAIIESSHDEHGIIWPKPITPFDCGIINMKPDDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y RL   G D   DD  E+ GS+FA  DL+G P+Q+I+G K  + ++VEIK 
Sbjct: 361 CSYMCETLYQRLIHGGFDPLLDDTNERPGSKFATMDLIGLPIQMIIGPKSAAQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R T  RE +++E  +N  S
Sbjct: 421 RKTDAREILTVEAALNRFS 439


>gi|293374695|ref|ZP_06621003.1| proline--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325840610|ref|ZP_08167091.1| proline--tRNA ligase [Turicibacter sp. HGF1]
 gi|292646609|gb|EFF64611.1| proline--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325490259|gb|EGC92592.1| proline--tRNA ligase [Turicibacter sp. HGF1]
          Length = 420

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 185/446 (41%), Positives = 264/446 (59%), Gaps = 30/446 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F+P L+E P DAEI SH+ +LR G I Q + G+Y++LPL ++ L+NV  I+R+E
Sbjct: 1   MKQSMMFIPTLREVPSDAEIRSHQFLLRAGFIKQVAAGVYTYLPLAKRVLNNVEGIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P LQ  +LW ESGR+D YG E++RL DRN++    GPTHEEV+T + R 
Sbjct: 61  LDAIGGNELLMPALQPKELWDESGRWDVYGSELMRLTDRNNREFALGPTHEEVITHVVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T YQIQ KFRDE RPRFG+MR REF+MKDAYSF  T E    +YN    +
Sbjct: 121 FLNSYKKLPLTVYQIQTKFRDEARPRFGLMRGREFIMKDAYSFHATQESLDEAYNNFVKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG IGG  S EF+ LA+ GE  +  S                
Sbjct: 181 YTNIFTRCGLNFRMVEADSGQIGGSQSAEFMALAEVGEDTIVYST--------------- 225

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
                       T  +AA  +V + ++    P+   V   A+GIEVGH+F  GTKYS PM
Sbjct: 226 ------------TGSFAANIEVADLEVGAPSPDGVGVVAHAKGIEVGHVFKLGTKYSEPM 273

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A F   + K   + MG YGIG  RV+ AVIE ++D  G+IWP  +APF I ++ +    
Sbjct: 274 NAVFLDENQKKQPIIMGCYGIGVSRVMMAVIEQNNDENGMIWPKGIAPFDIHVVPVDVKK 333

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +A E IYA L   G +V  DD  E+ G +F+ ADL+G P+++ VG + ++D  VE+
Sbjct: 334 ADQLEAAENIYAELKAAGFEVLLDDRKERAGVKFSDADLIGLPIRITVG-RGIADGIVEV 392

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           K R TG   ++++ +++ +   ++  
Sbjct: 393 KVRQTGEVAEVAVADLMTFVKEKYET 418


>gi|149914370|ref|ZP_01902901.1| prolyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
 gi|149811889|gb|EDM71722.1| prolyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
          Length = 455

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 232/447 (51%), Positives = 315/447 (70%), Gaps = 1/447 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E P +A+IASH+LMLR GMI Q S GIYSWLP+G K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKETPAEAQIASHRLMLRAGMIKQASAGIYSWLPMGFKVLRKLENIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R   + M +PTLQ ADLW ESGRYD YG+EMLR+ DR  + ++YGPT+EE++TDIFRS
Sbjct: 61  QIRARHVPMLMPTLQPADLWRESGRYDDYGEEMLRIKDRQGRDLLYGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SY++LP T Y IQ KFRDE+RPRFGVMR REF MKD Y+FDLT E + H+YN+  VS
Sbjct: 121 HVGSYKDLPLTLYHIQWKFRDEIRPRFGVMRGREFFMKDGYNFDLTREDALHAYNRHLVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL++IPMRAESGPIGGD +HEF+VLA+TGE+ VF   +  D        D+ 
Sbjct: 181 YLRTYERMGLQAIPMRAESGPIGGDDTHEFLVLAETGESGVFYDSEITDLRFGDREIDYT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            + +  +++E++T+ YA T D H+E +F D +PE +R S RGIEVG IFYFGTKYS PM 
Sbjct: 241 SVEACQAVMEEFTSRYARTDDTHDESVFHDRVPEERRRSGRGIEVGQIFYFGTKYSEPMG 300

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           AT +  DG    V MGS+GIG  R++ A+IE+SHD +GIIWP+ V PF   ++N+K  D 
Sbjct: 301 ATVQDRDGNTVPVHMGSHGIGVSRLIGAIIEASHDDRGIIWPEGVTPFHAGIVNLKTGDA 360

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               ACE IYA L+ +G +  +DD  ++ G++FA  DL+G P ++ VG + + +  VE+ 
Sbjct: 361 EADAACEAIYASLTALGLEPLYDDTDDRAGAKFATMDLIGLPWRITVGPRGLKNGVVELT 420

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R TG  E++  E+ +   +  ++ +R
Sbjct: 421 SRRTGESEELPPEQAVEKLARIYAAHR 447


>gi|209545456|ref|YP_002277685.1| prolyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533133|gb|ACI53070.1| prolyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 438

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 227/438 (51%), Positives = 307/438 (70%), Gaps = 3/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+ENP +A++ SH+LMLR G+I Q + GIY+WLP G + L N+  I+REE
Sbjct: 1   MRLSRGFLPTLKENPAEAQVISHRLMLRAGLIRQTAAGIYAWLPAGWRVLQNIARIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PT+QSA+LW  SGRYD+YG EMLR+ DR+++ ++YGPT+EE++TD+F  
Sbjct: 61  QDAIGAQELLMPTVQSAELWKRSGRYDAYGPEMLRIQDRHERELLYGPTNEEMITDLFGQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFDL    +  SY +M ++
Sbjct: 121 VVKSYRELPQVLYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDLDYASAVDSYRRMMLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+++IPM A++GPIGG+LSHEF++LA TGE+ VF    F +    S+  D D
Sbjct: 181 YLRTFQRLGVRAIPMVADTGPIGGELSHEFLILAPTGESGVFFDGAFEEQDWLSDPVDID 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  SL++   + T+ YAAT + H+E  +  +P  +R   RGIEVGHIF+FG KY+  M  
Sbjct: 241 DRESLDAFFTRMTSFYAATDEKHDEAAWADVPAERRREGRGIEVGHIFHFGRKYTESMDI 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG   Y +MGSYGIG  R+VAA+IE+SHD  GIIWPDSVAPF+ +++N+K  D  
Sbjct: 301 TVSGPDGAPLYPEMGSYGIGVSRLVAAIIEASHDDNGIIWPDSVAPFRAAILNLKTGDAA 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE++YA          +DD GE+ G +FA ADL+G P QVIVG +   + KVE+K 
Sbjct: 361 CDAICEQVYA---AAPESFLYDDRGERAGVKFADADLMGHPWQVIVGPRGAKEGKVELKR 417

Query: 421 RLTGIREDMSLEEVINYA 438
           R  G R ++S+++ +   
Sbjct: 418 RADGARFELSVDDALARI 435


>gi|296116519|ref|ZP_06835129.1| prolyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976731|gb|EFG83499.1| prolyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
          Length = 439

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 224/438 (51%), Positives = 301/438 (68%), Gaps = 3/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+ENP +A+I SH+LMLR G+I Q S GIY+WLP G K L N+  I+R E
Sbjct: 1   MRLSRSFLPTLKENPAEAQITSHRLMLRAGLIRQTSAGIYAWLPAGLKVLRNIANIVRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA EM +PTLQS++LW  SGRYD+YG EMLR+ DR+++ ++YGPT+EE++TD+F  
Sbjct: 61  QDAIGAQEMLMPTLQSSELWKRSGRYDAYGPEMLRIRDRHERDLLYGPTNEEMVTDLFGQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   Y +Q KFRDE+RPRFGVMR REF MKDAYSFD   + +  SY +M ++
Sbjct: 121 VVKSYRELPQVLYHVQWKFRDEVRPRFGVMRGREFYMKDAYSFDADYDAAVDSYRRMMLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+K+IPM A++GPIGG+LSHEF+VLA TGE+ VF    F +    SE  D  
Sbjct: 181 YLRTFQRLGVKAIPMVADTGPIGGELSHEFLVLAPTGESGVFFDGAFEEQDWLSEEVDIA 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  SL     + T+ YAAT + H+E  +  +P  +R   RGIEVGHIF+FG KY+  M  
Sbjct: 241 DRASLAKFFARMTSFYAATDEKHDEAQWAKVPVERRREGRGIEVGHIFHFGRKYTESMDI 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  G DG   + +MGSYGIG  R+VAA+IE+SHD +GIIWP++VAPF   +IN+K  D  
Sbjct: 301 SVSGPDGAPLFPEMGSYGIGVSRLVAAIIEASHDEQGIIWPETVAPFGAVIINLKNGDAQ 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C + CE++YA        + +DD  E+ G +FA ADL+G P QVIVG +      VE+K+
Sbjct: 361 CDEICERLYA---AAPDRLLYDDRPERAGVKFADADLMGHPWQVIVGPRGAKAGVVELKN 417

Query: 421 RLTGIREDMSLEEVINYA 438
           R +G R ++ ++ V+   
Sbjct: 418 RASGERSELPIDAVLTRI 435


>gi|319404243|emb|CBI77836.1| Prolyl-tRNA synthetase [Bartonella rochalimae ATCC BAA-1498]
          Length = 441

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 260/439 (59%), Positives = 339/439 (77%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+E+P++AE+ SH+ MLR GM+ Q + GIYSWLPLG+K LD +  IIREE
Sbjct: 1   MRLSQYFLPILKESPKEAEVISHRFMLRAGMVRQQTSGIYSWLPLGKKVLDKICKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PT+QSADLW ES RY+ YG EMLR+ DR D+ ++YGPT+EE++TDIFRS
Sbjct: 61  QERAGALEILMPTIQSADLWRESERYNDYGLEMLRIRDRQDRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR+REFLMKDAYSFDL    +K SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEIRPRFGVMRAREFLMKDAYSFDLDYASAKISYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGG+LSHEFI+LA TGE+ +FC K F++F +PS + DF 
Sbjct: 181 YLRTFSRVGLKAIPMRADTGPIGGELSHEFIILAKTGESSIFCDKRFLEFTVPSVSIDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  IV QWT+ YAAT ++HNE+ +  + ++ ++SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKDVLADIVRQWTSLYAATEEMHNEEEWSKVSDSNKLSARGIEVGHIFHFGTKYSAPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+H+V MGSYGIG  R+VAAVIESSHD  GIIWP S+APF   +IN+K  D+ 
Sbjct: 301 KVMGQDGKEHFVSMGSYGIGPSRLVAAVIESSHDEHGIIWPKSIAPFDFGIINMKPDDEK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y  L + G D   DD  E+ GS+FA  DL+G P+Q+I+G K  + ++VEIK 
Sbjct: 361 CSYICETLYQGLIRSGFDPLLDDTSERPGSKFATMDLIGLPVQMIIGPKNATQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG+RE +++E V+N  S
Sbjct: 421 RKTGLREVLTVEAVLNRFS 439


>gi|330994071|ref|ZP_08318001.1| Prolyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
 gi|329759017|gb|EGG75531.1| Prolyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
          Length = 440

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 225/438 (51%), Positives = 303/438 (69%), Gaps = 3/438 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP L+ENP +A+I SH+LMLR GMI Q + GIY+WLP G + L N+  I+R E
Sbjct: 1   MRLSRSFLPTLKENPTEAQITSHRLMLRAGMIRQTAAGIYAWLPTGLRVLRNIANIVRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PT+QSA+LW  SGRYD+YG EMLR+ DR+++ M++GPT+EE++TD+F  
Sbjct: 61  QDAIGAQELLMPTMQSAELWKRSGRYDAYGPEMLRIQDRHERDMLFGPTNEEMVTDLFGQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR REF MKDAYSFDL    +  +Y +M +S
Sbjct: 121 AIKSYKELPQVLYQIQWKFRDEVRPRFGVMRGREFYMKDAYSFDLDHAAAVDTYRRMMLS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RLG+++IPMRA++GPIGG+LSHEF++LA TGE+ VF      +     E  D +
Sbjct: 181 YLRTFQRLGVRAIPMRADTGPIGGELSHEFLILAPTGESGVFFDSALEEQDWVGETIDVN 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +L +     T+ YAAT ++H+E  +  +P  +R   RGIEVGHIF FG KY+  M  
Sbjct: 241 DRDALGAFFTSLTSFYAATDEMHDEAAWAKVPAERRREGRGIEVGHIFNFGRKYTQSMDI 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG   + +MGSYGIG  R+VAA+IE+SHD  GIIWP+SVAPF+  +IN+K  D  
Sbjct: 301 AVSGPDGAPLHPEMGSYGIGVSRLVAAIIEASHDENGIIWPESVAPFRAVIINLKNGDAQ 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CEK+YA       D+ +DD  E+ G++FA ADLLG P Q+IVG +   + KVE+K+
Sbjct: 361 CDAICEKLYA---AAPDDLLYDDRAERAGAKFADADLLGHPWQLIVGPRGAKEGKVEVKN 417

Query: 421 RLTGIREDMSLEEVINYA 438
           R TG R + +++  +   
Sbjct: 418 RRTGERTEETVDAALALI 435


>gi|58038568|ref|YP_190532.1| prolyl-tRNA synthetase [Gluconobacter oxydans 621H]
 gi|81819190|sp|Q5FUU9|SYP_GLUOX RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|58000982|gb|AAW59876.1| Prolyl-tRNA synthetase [Gluconobacter oxydans 621H]
          Length = 438

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 225/442 (50%), Positives = 301/442 (68%), Gaps = 11/442 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K F P L+E P +A+IASH+LMLR G++ Q + GIY+WLP G + L N+  IIREE
Sbjct: 1   MRLTKAFQPTLKEVPAEAQIASHRLMLRAGLVRQTASGIYAWLPAGLRVLRNIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q+  GA E+ +PTLQSA+LW  SGRYD+YG EMLR+ DR+ + ++YGPT+EE++TDIF S
Sbjct: 61  QDAIGAQEVLMPTLQSAELWRRSGRYDAYGPEMLRIQDRHGRDLLYGPTNEEMITDIFGS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD + EG+  SY +M +S
Sbjct: 121 SVKSYKELPKALYHIQWKFRDEVRPRFGVMRGREFLMKDAYSFDASYEGAVASYRRMMLS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRIF RLG++++PM A++GPIGGDLSHEF+VLA TGE+ VF      +    S   D D
Sbjct: 181 YLRIFQRLGVRAVPMVADTGPIGGDLSHEFLVLAPTGESAVFFDAALEEQDWLSRPVDCD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  SL +     T  YAAT + H+E  +  +P  ++   RGIEVGHIFYFGTKY+  M  
Sbjct: 241 DAESLATFFATVTDHYAATDEKHDEAEWAKVPAERKREGRGIEVGHIFYFGTKYTASMGI 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DG   +  MGSYG+G  R+V A+IE+SHD  GIIWP SVAP++ +++N++  D+ 
Sbjct: 301 EVSGPDGAPFHPHMGSYGVGVSRLVGAIIEASHDDAGIIWPASVAPYRAAILNLRQDDEA 360

Query: 361 CRDACEKIY----ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           C   C++IY      L        +DD  E+ G +F  ADL+G P Q+IVG +   + KV
Sbjct: 361 CDAICDRIYGTDPENL-------LYDDRSERAGVKFNDADLMGHPWQIIVGPRGAKEGKV 413

Query: 417 EIKHRLTGIREDMSLEEVINYA 438
           E+K R TG R ++S+E+ +   
Sbjct: 414 ELKQRATGERFELSVEDALAKI 435


>gi|148259950|ref|YP_001234077.1| prolyl-tRNA synthetase [Acidiphilium cryptum JF-5]
 gi|326403096|ref|YP_004283177.1| prolyl-tRNA synthetase [Acidiphilium multivorum AIU301]
 gi|166980092|sp|A5FX26|SYP_ACICJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146401631|gb|ABQ30158.1| prolyl-tRNA synthetase [Acidiphilium cryptum JF-5]
 gi|325049957|dbj|BAJ80295.1| prolyl-tRNA synthetase [Acidiphilium multivorum AIU301]
          Length = 437

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 223/439 (50%), Positives = 308/439 (70%), Gaps = 3/439 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +A+I SH+LMLR G+I Q S GIY+WLP G + L N+  I+REE
Sbjct: 1   MRLSRSLIPTLKETPAEAQIVSHRLMLRAGLIRQQSAGIYAWLPAGLRVLHNIANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G+ E+ +PT+QSA+LW ESGRYD+YG EMLR+ DR+D+ M+YGPT+EE++T I R 
Sbjct: 61  QARAGSQEILMPTIQSAELWRESGRYDAYGPEMLRIRDRHDREMLYGPTNEEMLTAIMRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR+LP   YQIQ KFRDE+RPRFGV+R REF MKD YSFDL  EG+  SY +M ++
Sbjct: 121 SVQSYRDLPQMLYQIQWKFRDEVRPRFGVLRGREFYMKDGYSFDLDYEGAVESYRRMMLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+R F R+G++++PMRA++GPIGG+LSHEF +LA TGE+ VF    F    +  +  D++
Sbjct: 181 YMRTFKRMGVRAVPMRADTGPIGGNLSHEFHILAPTGESGVFYDSSFETIELGDDAYDYE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L++  ++ T+ YAAT + H+E  +  +PE++R   RGIEVG IFYFGTKYS  M+ 
Sbjct: 241 ARADLDAFFDRMTSLYAATDEKHDEAAWAKVPEDRRREGRGIEVGQIFYFGTKYSQAMNF 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T  G DG   + +MGSYGIG  R+  A+IE+SHD  GIIWPD++APF+ S++N++  DQV
Sbjct: 301 TVVGPDGARLHPEMGSYGIGVSRLTGAIIEASHDEAGIIWPDAIAPFRASILNLRQGDQV 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               CE+IY  L   G D  +DD   + G +FA ADL+G P QVIVG +  +  +VE+KH
Sbjct: 361 TDALCERIYDAL---GRDALYDDREARAGEKFADADLMGHPWQVIVGPRGAAKGQVELKH 417

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG R ++ +E  +    
Sbjct: 418 RRTGERAELDIESALAKVR 436


>gi|310815331|ref|YP_003963295.1| prolyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
 gi|308754066|gb|ADO41995.1| prolyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
          Length = 445

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 231/433 (53%), Positives = 314/433 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+ENP +A+I SH+ MLR GMI Q S GIY+WLPLG K L  +  I+ EE
Sbjct: 1   MRLSRYFLPVLKENPAEAQILSHRYMLRAGMIKQESAGIYAWLPLGYKVLSRLEKIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G I + +PTLQSADLW ESGRYD+YG EMLR+ DRN + M++GPT+EE++TDIFRS
Sbjct: 61  QQRAGHIPLLMPTLQSADLWRESGRYDAYGPEMLRMTDRNKREMLFGPTNEEMITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP T Y IQ KFRDE+RPRFGVMR REFLMKD Y+FDLT E + H+YN+  VS
Sbjct: 121 YVRSYKDLPLTLYHIQWKFRDEMRPRFGVMRGREFLMKDGYNFDLTREDALHAYNRHMVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR + R+GL +IPMRA+SGPIGGD +HEF+VLA+TGE++VF  +D     +     ++D
Sbjct: 181 YLRTYERMGLTAIPMRADSGPIGGDDTHEFLVLANTGESEVFYDEDVTRLKLGERAINYD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   + +I +++T PYA T + H+  LFD++PE +R   RGIEVG IFYFGTKYS PM A
Sbjct: 241 NREEVAAICQEFTTPYARTDETHDAALFDAIPEGRRKVGRGIEVGQIFYFGTKYSEPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T + A+GK   V+MGS+GIG  R++ A+IE++HD KGIIWP+ V PF + ++N+K  D  
Sbjct: 301 TVQNAEGKQVPVEMGSHGIGVSRLIGALIEANHDDKGIIWPEGVTPFHVGIVNLKQGDAE 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
              ACE ++     +G D  +DD  E+ G +FA  DL+G P ++ VG + + +  VE+  
Sbjct: 361 ADAACEALHDSFVALGLDPLYDDRDERAGGKFATMDLIGLPWRITVGPRGLKNGVVELTS 420

Query: 421 RLTGIREDMSLEE 433
           R TG+ E++  EE
Sbjct: 421 RRTGVSEELPPEE 433


>gi|319405682|emb|CBI79305.1| Prolyl-tRNA synthetase [Bartonella sp. AR 15-3]
          Length = 441

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 259/439 (58%), Positives = 335/439 (76%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AE+ SH+ MLR GMI Q + GIYSWLPLG+K LD +  IIREE
Sbjct: 1   MRLSQYFLPILKENPKEAEVVSHRFMLRAGMIRQQTSGIYSWLPLGKKVLDKICKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R GA+E+ +PT+QSADLW ES RY+ YG EMLR+ DR D+ ++YGPT+EE++TDIFRS
Sbjct: 61  QERIGALEILMPTIQSADLWRESNRYNDYGLEMLRIKDRQDRDLLYGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMR+REFLMKDAYSFDL    +K SYN+MFV+
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEIRPRFGVMRAREFLMKDAYSFDLDYASAKTSYNRMFVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F R+GLK+IPMRA++GPIGG+LSHEFI+L++TGE+ +FC K F++F IPS + DF 
Sbjct: 181 YLRTFSRIGLKAIPMRADTGPIGGELSHEFIILSETGESSIFCDKRFLEFTIPSVSIDFT 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L  +V QWT+ YAAT ++HNE+ ++ +    ++SARGIEVGHIF+FGTKYS PM A
Sbjct: 241 DKDVLADVVRQWTSLYAATEEMHNEEEWNKVSAMNKLSARGIEVGHIFHFGTKYSAPMGA 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK+  V MGSYGIG  R+VAAVIESSHD  GIIWP SVAPF   +IN+K  DQ 
Sbjct: 301 KIMGQDGKERLVSMGSYGIGPSRLVAAVIESSHDEHGIIWPKSVAPFDFGIINMKPDDQK 360

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C   CE +Y  L + G D   DD  E+ GS+FA  DL+G P+Q+I+  K V+ ++VEIK 
Sbjct: 361 CSYICETLYQGLIRNGFDPLLDDTSERPGSKFATMDLIGLPVQMIISPKNVTQNEVEIKD 420

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG RE +++E  ++  +
Sbjct: 421 RKTGFREVLTVEAALHRFA 439


>gi|86281359|gb|ABC90422.1| prolyl-tRNA synthetase protein [Rhizobium etli CFN 42]
          Length = 410

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 267/408 (65%), Positives = 333/408 (81%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI Q S+GIYSWLPLG++ LD VNAIIREEQNR GAIE+S+PTLQSA+LW ESGRYD+YG
Sbjct: 1   MIRQQSQGIYSWLPLGKRVLDKVNAIIREEQNRAGAIELSMPTLQSAELWQESGRYDAYG 60

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEMLR+ DR D+ M+YGPT+EE++TDIFRS +KSY++LP   Y IQLKFRDE+RPRFG M
Sbjct: 61  KEMLRIKDRQDRPMLYGPTNEEMVTDIFRSSVKSYKDLPLNLYHIQLKFRDEIRPRFGTM 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           RSREF+MKDAYSFDLT EG++HSYNKMF +YLR F RLGL++IPMRA++GPIGG+LSHEF
Sbjct: 121 RSREFMMKDAYSFDLTREGAEHSYNKMFAAYLRTFERLGLRAIPMRADTGPIGGNLSHEF 180

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I+LADTGE++VFC KDF+ F IP ENTDFD +  L +I ++WT+ YAATS++H+E  F++
Sbjct: 181 IILADTGESEVFCHKDFVGFDIPGENTDFDSVEGLKAIFDKWTSLYAATSEMHDEAAFNA 240

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +PE  R+SARGIEVGHIFYFGTKYS PM A  +G DGK+H+V MGSYGIG  R+V A+IE
Sbjct: 241 VPEGDRLSARGIEVGHIFYFGTKYSEPMGAKVQGPDGKEHFVHMGSYGIGPTRLVPAIIE 300

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +SHD  GIIWP SVAPF + +IN+K  DQ C D CE IYA L K G DV +DD  ++ G+
Sbjct: 301 ASHDDNGIIWPASVAPFDVVVINMKVGDQACDDTCELIYAALKKAGKDVLYDDTDDRAGT 360

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +FA ADL+G P+Q+I G + V++ +VE+K R TG RE M++E  IN  
Sbjct: 361 KFATADLIGVPVQIIAGPRAVANGEVEVKDRKTGARETMTIEAAINRF 408


>gi|190570494|ref|YP_001974852.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019252|ref|ZP_03335059.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190356766|emb|CAQ54125.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995361|gb|EEB56002.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 419

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 218/441 (49%), Positives = 301/441 (68%), Gaps = 22/441 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y+LP L+E P  AEI SH+ +LR G+I Q + GIYSWLPLG   L N+  IIR+E
Sbjct: 1   MRLSQYYLPTLKETPAGAEIISHQYLLRAGLIKQTASGIYSWLPLGLLVLKNIENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GAIE+ +P +Q A LW ESGRYD YGKEMLR+ DR++  M++GPTHEEV+TD+ R+
Sbjct: 61  ---IGAIEVLMPCVQPASLWRESGRYDDYGKEMLRIKDRHESDMLFGPTHEEVVTDLIRN 117

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPR+GVMR REFLMKDAYSFD+  EG+ +SYN M+ +
Sbjct: 118 TVKSYKDLPLCLYQIQWKFRDEVRPRYGVMRGREFLMKDAYSFDVDYEGALNSYNLMYKT 177

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R+GL  I +RA++GPIGG+LSHEF +LA+TGE+ ++      +     +     
Sbjct: 178 YIKIFKRMGLTPIGVRADTGPIGGNLSHEFHILANTGESTLYYDNKLFELLESED----- 232

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   +E   + YA   D+H+ +    + + +   ++GIE+GHIFYFG KYS PM A
Sbjct: 233 --------IESLKSIYAVADDMHDPESC-PITQEQLNVSKGIEIGHIFYFGDKYSKPMKA 283

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    DGK+  + MGSYGIG  R+V A+IE+ HD KGIIWP++VAPFK+ LIN++     
Sbjct: 284 SVTSQDGKNVNMHMGSYGIGVSRLVGAIIEAFHDDKGIIWPEAVAPFKVGLINLQTK--- 340

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +A +KIY  L     +V +DD  E +G +FA  DL+G P Q+I+G K VS++ VE+K+
Sbjct: 341 VTEAADKIYKALKSD--EVLYDDTDESVGVKFARMDLIGLPWQIIIGKKAVSENIVEVKN 398

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG  E++ +EE IN  S +
Sbjct: 399 RATGEVEEIQVEEAINRFSAK 419


>gi|91205619|ref|YP_537974.1| prolyl-tRNA synthetase [Rickettsia bellii RML369-C]
 gi|157827332|ref|YP_001496396.1| prolyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
 gi|114152245|sp|Q1RIC9|SYP_RICBR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980150|sp|A8GU77|SYP_RICB8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91069163|gb|ABE04885.1| Prolyl-tRNA synthetase [Rickettsia bellii RML369-C]
 gi|157802636|gb|ABV79359.1| prolyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
          Length = 432

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 211/433 (48%), Positives = 298/433 (68%), Gaps = 13/433 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E+P +A+I SHKLMLR+GMI Q + GIYSWLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEDPSEAQITSHKLMLRSGMIRQQAAGIYSWLPLGLKVLKNIENIVRSN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G +E+ +P +Q A LWVESGR+D+YGKEML+  DR+D  +++GPT+E+++TDIFR+
Sbjct: 61  MDKAGCLEVLMPCIQPAHLWVESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMVTDIFRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDIDEESAVKTYNQMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ ++P+ A++GPIGG LSHEF ++A+TGE+ ++  K F             
Sbjct: 181 YINTFRDLGVFAVPVIADNGPIGGKLSHEFHIIAETGESNIYYDKRFKTLKDN------- 233

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                +  +E+  + YAA  + H+     S  + +  S++GIEVGHIFY GTKYS+ M+A
Sbjct: 234 ----PDIDIEEIKSWYAAAEEKHDASKLSS--DKEITSSKGIEVGHIFYIGTKYSVNMNA 287

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   ++M SYGIG  R+VAA+IE++ D KGIIWP +VAPFKISLIN+  HD  
Sbjct: 288 LINDEHGKLTPIEMSSYGIGISRLVAAIIEANSDAKGIIWPIAVAPFKISLINLNIHDSK 347

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +  E++Y  L     +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+K+
Sbjct: 348 CLELAERVYNELLAQNIEVLYDDTDVRAGSKFATHDLIGSPYQIIIGPKKAANNIVELKN 407

Query: 421 RLTGIREDMSLEE 433
           R  G  ED+ L +
Sbjct: 408 RKNGEIEDIDLNK 420


>gi|58584338|ref|YP_197911.1| prolyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|81311670|sp|Q5GTK5|SYP_WOLTR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|58418654|gb|AAW70669.1| Prolyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 425

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 215/439 (48%), Positives = 296/439 (67%), Gaps = 16/439 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y+LP L+E P  A I SH+  LR G+I Q + GIY+WLPLG + L N+  IIR+E
Sbjct: 1   MRLSQYYLPTLKEKPAHARIISHQYSLRAGLIKQIASGIYTWLPLGLRVLKNIEGIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE  +P +Q A LW ESGRYD YGK MLR+ DR+++ M++GPTHEEV TD+ R 
Sbjct: 61  MNKSGAIEALMPCVQPASLWRESGRYDDYGKTMLRIRDRHEEDMLFGPTHEEVATDLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+NLP   YQIQ KFRDE+RPR+GVMR REFLMKDAYSF++  E + +SYN M+ +
Sbjct: 121 IVKSYKNLPLCLYQIQWKFRDEVRPRYGVMRGREFLMKDAYSFNVNYESALNSYNLMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R+GL  I +RA++G IGG+LSHEF +LA TGE+ ++    F +     +     
Sbjct: 181 YIKIFKRMGLIPIGVRADTGLIGGNLSHEFHILASTGESTLYYDNKFFELLESED----- 235

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   V+   + YA   D+H+ K    +P+ +   ++GIE+GHIFYFG KYS PM+A
Sbjct: 236 --------VKSLKSIYAVADDIHDPK-TCPVPQEQLNVSKGIEIGHIFYFGDKYSKPMNA 286

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                DGK+  + MGSYGIG  R+V A+IE+ HD KGI WP++VAPF++ LIN++     
Sbjct: 287 KVTAQDGKNVNIHMGSYGIGVSRLVGAIIEAFHDDKGITWPEAVAPFRVGLINLQTKTAE 346

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   KIY+ L     +V +DD    IG +FA  DL+G P Q+IVG K VS++ +EIK+
Sbjct: 347 YVEIANKIYSTLKSD--EVLYDDTEGSIGVKFAKMDLIGLPWQIIVGKKAVSENIIEIKN 404

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG  E++ +EE INY +
Sbjct: 405 RATGKVEEVQIEEAINYFN 423


>gi|157803870|ref|YP_001492419.1| prolyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
 gi|166980151|sp|A8EZ51|SYP_RICCK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157785133|gb|ABV73634.1| prolyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
          Length = 438

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 213/446 (47%), Positives = 302/446 (67%), Gaps = 12/446 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A+I SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQITSHKLMLRSGMIRQQAAGIYTWLPLGLKILKNIENIVRSN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+++YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFENYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+MF +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMFKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LS+EF ++A+TGE+ ++  K F  F          
Sbjct: 181 YINTFRDLGVFAIPVIADNGPIGGNLSNEFHIIAETGESTLYYDKRFKIFKDN------- 233

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                +  VE+  + YAA+ + H+      + E +  S++GIEVGHIFY G+KYS+ M+A
Sbjct: 234 ----PDIDVEEIKSWYAASEEKHDVNKL-PISEQEITSSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   V+M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEHGKLTPVEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHDSK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +  E+ Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE K+
Sbjct: 349 CTELAERAYKELSAQNIEVLYDDTDVRPGSKFATHDLIGSPYQIIIGPKKAANNIVEFKN 408

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R +G+ ED+ +  +           +
Sbjct: 409 RKSGVIEDIKIGNLKKLIMSCLRQQK 434


>gi|67458992|ref|YP_246616.1| prolyl-tRNA synthetase [Rickettsia felis URRWXCal2]
 gi|75536572|sp|Q4ULX2|SYP_RICFE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|67004525|gb|AAY61451.1| Prolyl-tRNA synthetase [Rickettsia felis URRWXCal2]
          Length = 427

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 215/439 (48%), Positives = 303/439 (69%), Gaps = 12/439 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIENIVRSN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++ +K F             
Sbjct: 181 YINTFRDLGVFAIPVIADNGPIGGNLSHEFHIIAETGESTIYYNKRFKTLKDN------- 233

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                N  VE+  + YAA  + H+      + E +  S++GIEVGHIFY G+KYS+ M+A
Sbjct: 234 ----PNIDVEEIKSWYAAAEEKHDVNKL-PISEQEITSSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   V+M SYGIG  R+VAA+IE++ + KGIIWP +VAPFK+SLIN+  HD  
Sbjct: 289 LINDEHGKLTPVEMSSYGIGISRLVAAIIEANCNEKGIIWPSNVAPFKVSLINLNIHDSK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +   K+Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +D  VE+K+
Sbjct: 349 CVELAAKVYKELSAQNIEVLYDDTEARAGSKFATHDLIGSPYQIIIGPKKAADDIVELKN 408

Query: 421 RLTGIREDMSLEEVINYAS 439
           R  G+ ED+ +E +I+Y  
Sbjct: 409 RKIGVIEDIEVENLIHYIK 427


>gi|15604249|ref|NP_220765.1| prolyl-tRNA synthetase [Rickettsia prowazekii str. Madrid E]
 gi|6226191|sp|Q9ZDE7|SYP_RICPR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|3860941|emb|CAA14841.1| PROLYL-TRNA SYNTHETASE (proS) [Rickettsia prowazekii]
 gi|292571991|gb|ADE29906.1| Prolyl-tRNA synthetase [Rickettsia prowazekii Rp22]
          Length = 432

 Score =  359 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 213/440 (48%), Positives = 299/440 (67%), Gaps = 12/440 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLPIL+E P +A++ SHKLMLR+GMI + + G+Y+WLPLG K L N+  ++R  
Sbjct: 1   MLLSKYFLPILKEEPSEAKVISHKLMLRSGMIMKQAAGLYTWLPLGLKVLKNIENVVRSN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR++ YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKVGALEVLMPCIQPAHLWIESGRFEHYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  + + ++YNKM+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINQKNAVNTYNKMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K F             
Sbjct: 181 YMNTFRDLGVFAIPVIADNGPIGGNLSHEFHIVAETGESTIYYDKRFKILKDN------- 233

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                +  VE+    YAA  + H+     S PE     ++GIEVGHIFY G+KYS+ M+A
Sbjct: 234 ----PDIDVEEIKGWYAAAEEKHDVNKLSSFPEG-ITRSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   V+M SYGIG  R+ AA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEYGKLIPVEMSSYGIGISRLAAAIIEANCDKKGIIWPCSVAPFKVSLINLNIHDNK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +   K    LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+K 
Sbjct: 349 CVELAAKTDKELSHQNIEVLYDDTDARPGSKFATHDLIGSPYQIIIGPKKAANNIVELKD 408

Query: 421 RLTGIREDMSLEEVINYASH 440
           R TG+ ED+ +E +INY  +
Sbjct: 409 RKTGVLEDIEVENIINYIKN 428


>gi|51473574|ref|YP_067331.1| prolyl-tRNA synthetase [Rickettsia typhi str. Wilmington]
 gi|81826313|sp|Q68WZ3|SYP_RICTY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|51459886|gb|AAU03849.1| Proline translase [Rickettsia typhi str. Wilmington]
          Length = 428

 Score =  357 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 217/439 (49%), Positives = 300/439 (68%), Gaps = 12/439 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLPIL+E P +A++ SHKLMLR+GMI + + G+Y+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPILKEEPSEAQVISHKLMLRSGMIMKQASGLYTWLPLGLKVLKNIENIVRSN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR++ YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKVGALEVLMPCIQPAHLWIESGRFEYYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E + ++YNKM+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINQENAVNTYNKMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K F             
Sbjct: 181 YINTFRDLGVFAIPVIADNGPIGGNLSHEFHIIAETGESTIYYDKRFKILKDN------- 233

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                +  VE+  + YAA  + H+     S PE    S++GIEVGHIFY G+KYS+ M+A
Sbjct: 234 ----PDIDVEEIKSWYAAAEEKHDVNKLSSFPEG-ITSSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   V+M SYGIG  R+ AA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEYGKLIPVEMSSYGIGISRLAAAIIEANCDKKGIIWPFSVAPFKVSLINLNIHDNK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +   K    LS    +V +DD   + GS+FA  DL+G P QVI+G K  +++ VE+K 
Sbjct: 349 CVELAAKTDKELSNKNIEVLYDDTEARPGSKFATHDLIGSPYQVIIGPKKAANNIVELKD 408

Query: 421 RLTGIREDMSLEEVINYAS 439
           R TG+ ED+ +E +INY  
Sbjct: 409 RKTGVLEDIEIENLINYIR 427


>gi|262277283|ref|ZP_06055076.1| prolyl-tRNA synthetase [alpha proteobacterium HIMB114]
 gi|262224386|gb|EEY74845.1| prolyl-tRNA synthetase [alpha proteobacterium HIMB114]
          Length = 442

 Score =  357 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 220/447 (49%), Positives = 308/447 (68%), Gaps = 6/447 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S YFLPIL+ENP +A+I SH+LMLR GMI Q + GIYSWLP+G K L N+  I+REE
Sbjct: 1   MKLSNYFLPILKENPSEAKIKSHQLMLRAGMIRQSASGIYSWLPMGFKVLKNIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QN+ GAIE+ +PT+QSAD+W ESGRYD YGKEMLR++DR+++ ++YGPT+EE++T IFR 
Sbjct: 61  QNKAGAIELLMPTIQSADIWKESGRYDDYGKEMLRISDRHERDLLYGPTNEELITQIFRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+NLP   Y IQ KFRDE+RPRFGVMR REFLMKD YSFD+    ++ SY KMF+S
Sbjct: 121 NIKSYKNLPLMLYHIQWKFRDEIRPRFGVMRCREFLMKDTYSFDVDKATAEFSYKKMFLS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+ F +  L +IPM+AE+GPIGGDLSHEFI+LADTGE++VF  K+ +D  +   +    
Sbjct: 181 YLKTFQKFELNAIPMKAETGPIGGDLSHEFIILADTGESEVFLDKNLLDIDVNEVD---Y 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
              ++N I+E+++  Y+AT + H+   F+ ++ +  ++  +GIE+GHIFYFG KYS  M 
Sbjct: 238 SEKNINEIIERFSKFYSATDEKHDVNEFENNVSKENQLRTKGIEIGHIFYFGDKYSKSMK 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A     +GK+   QMGSYGIG  R+ AA+IE+ ++G  + WP +V PFK+++IN+  +  
Sbjct: 298 ALVNNKEGKNINPQMGSYGIGVSRLPAAIIEAKYNGTFMKWPKTVTPFKVAIINLGKNGD 357

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  +IY  L     D   DD  E   S+F   DL+G P Q+I+GSK +   + E K
Sbjct: 358 EADQKSNEIYQNLINANLDPILDDTSENPSSKFKNFDLIGIPYQIIIGSK-LKKDEFEFK 416

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
             +   +  +S EEVIN     ++ ++
Sbjct: 417 E-IGEEKLILSKEEVINRLKEIYNIDK 442


>gi|225631202|ref|ZP_03787900.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591110|gb|EEH12294.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 422

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 214/441 (48%), Positives = 299/441 (67%), Gaps = 19/441 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY+LP L+E P  A+I SH+  LR G+I Q + GIY+WLPLG   L N+  IIR+E
Sbjct: 1   MRLSKYYLPTLKEKPAHAKIISHQYSLRAGLIKQIASGIYTWLPLGLLVLKNIEDIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE  +P +Q A LW ESGRYD YGKEMLR+ DR+++ M++GPTHEE+ TD+ R 
Sbjct: 61  MNKSGAIEALMPCVQPASLWRESGRYDDYGKEMLRIKDRHEEDMLFGPTHEEIATDLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPR+GVMR REFLMKDAYSFD+  EG+ +SYN M+ +
Sbjct: 121 VVKSYKDLPLCLYQIQWKFRDEVRPRYGVMRGREFLMKDAYSFDVDYEGALNSYNLMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R+G   I +RA++GPIGG+LSHEF +LA+TGE+ ++    F +     +     
Sbjct: 181 YIKIFKRMGFTPIGVRADTGPIGGNLSHEFHILANTGESTLYYDNKFSELLESED----- 235

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   +E   + YA   D+H+ +    + + +   ++GIE+GHIFYFG KYS PM A
Sbjct: 236 --------IESLKSIYAVADDMHDPE-TCPISQEQLNVSKGIEIGHIFYFGDKYSKPMKA 286

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    DGK+  + MGSYGIG  R+V A+IE+ HD KGIIWP+SVAPF+I LIN++     
Sbjct: 287 SVTSQDGKNVNIHMGSYGIGVSRLVGAIIEAFHDDKGIIWPESVAPFRIGLINLQPK--- 343

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +A +KIY  L     +V +DD    +G +F+  DL+G P Q+IVG K + +  VE+K+
Sbjct: 344 VTEAADKIYKALKSD--EVLYDDTEGSVGVKFSRMDLIGLPWQIIVGKKAIDEKIVEVKN 401

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG  ++M +EE +N+ S +
Sbjct: 402 RATGEVKEMPIEEAVNHFSTK 422


>gi|254453587|ref|ZP_05067024.1| prolyl-tRNA synthetase [Octadecabacter antarcticus 238]
 gi|198267993|gb|EDY92263.1| prolyl-tRNA synthetase [Octadecabacter antarcticus 238]
          Length = 428

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 214/418 (51%), Positives = 289/418 (69%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI Q S GIYSWLPLG K L  +  I+ EEQ R G I + +PT+QSADLW ESGR
Sbjct: 1   MLRAGMIKQSSAGIYSWLPLGFKVLKRIEQIVHEEQERAGHIAIQMPTIQSADLWRESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           Y++YG EMLR+ DRN   +++ PT EE++TDIFRSH+ SY++LP T YQIQ KFRDE RP
Sbjct: 61  YEAYGDEMLRIKDRNGNDLLFTPTAEELVTDIFRSHVASYKSLPMTLYQIQWKFRDERRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMR REF MKD Y+FDLT E + H+YN+  VSYLR + R+GL++IPMRA SGPIGGD
Sbjct: 121 RFGVMRGREFYMKDGYTFDLTKEDAMHAYNRHLVSYLRTYERMGLQAIPMRAASGPIGGD 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            +HEF+VLADTGE++VF      +    +   D+DD+     ++E++T  YA T + H+ 
Sbjct: 181 DTHEFLVLADTGESEVFYDAAVTELSFGNREIDYDDVAQCADVMEEFTTKYARTDETHDP 240

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            LFD++P +++ +ARGIEVG IFYFGTKYS  M AT +G DGK   V MGS+GIG  R++
Sbjct: 241 ALFDAIPADRQRTARGIEVGQIFYFGTKYSDAMGATVQGPDGKPTAVHMGSHGIGVSRLL 300

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A+IE+SHD KGIIWP+ V PF + ++N+K  D     AC+ +Y  ++ +G +  +DD  
Sbjct: 301 GAIIEASHDDKGIIWPEGVTPFHVGIVNLKQGDADADAACQSLYDAVAALGLEALYDDRD 360

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           E+ GS+F   D++G P ++ VG + + +  VE+  R TG  E+M  E+ I      + 
Sbjct: 361 ERAGSKFGTMDMIGLPWRITVGPRGLKNGVVELTSRKTGESEEMPPEQAIAKIGEIYR 418


>gi|58698845|ref|ZP_00373719.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225630527|ref|YP_002727318.1| prolyl-tRNA synthetase [Wolbachia sp. wRi]
 gi|254782927|sp|C0R3N5|SYP_WOLWR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|58534643|gb|EAL58768.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225592508|gb|ACN95527.1| prolyl-tRNA synthetase [Wolbachia sp. wRi]
          Length = 422

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 218/441 (49%), Positives = 302/441 (68%), Gaps = 19/441 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY+LP L+E P  A+I SH+  LR G+I Q + GIYSWLPLG   L N+  IIR+E
Sbjct: 1   MRLSKYYLPTLKEKPAHAKIISHQYSLRAGLIKQIASGIYSWLPLGLLVLKNIEDIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GAIE+ +P +Q A+LW ESGRYD YGKEMLR+ DR+++ M++GPTHEEV TD+ R 
Sbjct: 61  MDKSGAIEVLMPCVQPANLWRESGRYDDYGKEMLRIKDRHEEDMLFGPTHEEVATDLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPR+GVMR REFLMKDAYSFD+  EG+ +SYN M+ +
Sbjct: 121 VVKSYKDLPLCLYQIQWKFRDEVRPRYGVMRGREFLMKDAYSFDVDYEGALNSYNLMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R+GL  I +RA++GPIGG+LSHEF +LA+TGE+ ++    F +     +     
Sbjct: 181 YIKIFKRMGLTPIGVRADTGPIGGNLSHEFHILANTGESTLYYDNKFSELLESED----- 235

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   VE   + YA   D+H+ +    + + +   ++GIE+GHIFYFG KYS PM A
Sbjct: 236 --------VESLKSIYAVADDMHDPE-TCPISQEQLNVSKGIEIGHIFYFGDKYSKPMKA 286

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    DGK+  + MGSYGIG  R+V A+IE+ HD KGIIWP+SVAPF+I LIN++     
Sbjct: 287 SVTSQDGKNVNIHMGSYGIGVSRLVGAIIEAFHDDKGIIWPESVAPFRIGLINLQTK--- 343

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +A +KIY  L     +V +DD    +G +F+  DL+G P Q+IVG K + +  VE+K+
Sbjct: 344 VTEAADKIYKALKSD--EVLYDDTEGSVGVKFSRMDLIGLPWQIIVGKKAIDEKIVEVKN 401

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG  ++M +EE IN+ S +
Sbjct: 402 RATGEVKEMQIEEAINHFSTK 422


>gi|42520651|ref|NP_966566.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|81831258|sp|Q73GW6|SYP_WOLPM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|42410390|gb|AAS14500.1| prolyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 422

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 215/441 (48%), Positives = 299/441 (67%), Gaps = 19/441 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY+LP L+E P  A+I SH+  LR G+I Q + GIY+WLPLG   L N+  IIR+E
Sbjct: 1   MRLSKYYLPTLKEKPAHAKIISHQYSLRAGLIKQIASGIYTWLPLGLLVLKNIEDIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE  +P +Q A LW ESGRYD YGKEMLR+ DR+++ M++GPTHEE+ TD+ R 
Sbjct: 61  MNKSGAIEALMPCVQPASLWRESGRYDDYGKEMLRIKDRHEEDMLFGPTHEEIATDLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPR+GVMR REFLMKDAYSFD+  EG+ +SYN M+ +
Sbjct: 121 VVKSYKDLPLCLYQIQWKFRDEVRPRYGVMRGREFLMKDAYSFDVDYEGALNSYNLMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R+G   I + A++GPIGG+LSHEF +LA+TGE+ ++    F +     +     
Sbjct: 181 YIKIFKRMGFTPIGVGADTGPIGGNLSHEFHILANTGESTLYYDNKFSELLESED----- 235

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   +E   + YA   D+H+ +    + + +   ++GIE+GHIFYFG KYS PM A
Sbjct: 236 --------IESLKSIYAVADDMHDPE-TCPISQEQLNVSKGIEIGHIFYFGDKYSKPMKA 286

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    DGK+  + MGSYGIG  R+V A+IE+ HD KGIIWP+ VAPF+I LIN++     
Sbjct: 287 SVTSQDGKNVNIHMGSYGIGVSRLVGAIIEAFHDDKGIIWPEEVAPFRIGLINLQTK--- 343

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +A +KIY  L     +V +DD    +G +F+  DL+G P Q+IVG K VS++ VE+K+
Sbjct: 344 VTEAADKIYKALKSD--EVLYDDTEGSVGVKFSRMDLIGLPWQIIVGKKAVSENIVEVKN 401

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R TG  ++M +EE IN+ S +
Sbjct: 402 RATGEVKEMQIEEAINHFSAK 422


>gi|157825653|ref|YP_001493373.1| prolyl-tRNA synthetase [Rickettsia akari str. Hartford]
 gi|166980149|sp|A8GN90|SYP_RICAH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157799611|gb|ABV74865.1| prolyl-tRNA synthetase [Rickettsia akari str. Hartford]
          Length = 427

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 212/439 (48%), Positives = 298/439 (67%), Gaps = 12/439 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+YFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+   
Sbjct: 1   MLLSQYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIENIVSLN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+++YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFNNYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG LSHEF ++A+TGE+ ++  K F             
Sbjct: 181 YINTFRDLGVFAIPVIADNGPIGGKLSHEFHIIAETGESTIYYDKRFKTLKDN------- 233

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                +  V++  + YAA  + H+      + E +  S++GIEVGHIFY G+KYS+ M A
Sbjct: 234 ----PDIDVDEIKSWYAAAEEKHDINKL-PISEQEITSSKGIEVGHIFYIGSKYSVNMKA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   V+M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEHGKLAPVEMSSYGIGISRLVAAIIEANCDEKGIIWPFSVAPFKVSLINLNIHDSK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +   K Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+K 
Sbjct: 349 CVELAAKAYKDLSDKNIEVLYDDTEARPGSKFATHDLIGSPHQIIIGPKKAANNIVELKD 408

Query: 421 RLTGIREDMSLEEVINYAS 439
           R +G  ED+ +E +INY  
Sbjct: 409 RKSGNIEDIEVENLINYIK 427


>gi|239947222|ref|ZP_04698975.1| prolyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|241068545|ref|XP_002408465.1| tRNA synthetases class II, putative [Ixodes scapularis]
 gi|215492453|gb|EEC02094.1| tRNA synthetases class II, putative [Ixodes scapularis]
 gi|239921498|gb|EER21522.1| prolyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 426

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 213/438 (48%), Positives = 301/438 (68%), Gaps = 12/438 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLM R+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQVTSHKLMFRSGMIRQQAAGIYTWLPLGLKLLKNIENIVRLN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K F      S      
Sbjct: 181 YINTFRDLGVFAIPVIADNGPIGGNLSHEFHIIAETGESTIYYDKRFKTLKDNS------ 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                +  VE+  + YAA  + H+      + E +  S++GIEVGHIFY G+KYS+ M+A
Sbjct: 235 -----DIDVEEIKSWYAAAEEKHDVNKL-PISEQEITSSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   V+M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEHGKLTPVEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHDSK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +   K Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +D+ VE+K+
Sbjct: 349 CVELAAKAYKELSAQNIEVLYDDTEARAGSKFATHDLIGSPYQIIIGPKKAADNIVELKN 408

Query: 421 RLTGIREDMSLEEVINYA 438
           R +G+ ED+ +  +++  
Sbjct: 409 RKSGVIEDIEIGSLMSIL 426


>gi|330814001|ref|YP_004358240.1| prolyl-tRNA synthetase Bacterial type [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487096|gb|AEA81501.1| prolyl-tRNA synthetase Bacterial type [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 441

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 222/442 (50%), Positives = 302/442 (68%), Gaps = 7/442 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S +FLPIL++ P DA I SH+LMLR+GMI Q + GIYSWLPLG K L  + +I+R+E
Sbjct: 1   MKLSNFFLPILRDVPSDATIKSHQLMLRSGMIRQSASGIYSWLPLGFKVLKKIESIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QN+ GA EM +PT+QSADLW ESGRYD YG EMLR+ DR D+ ++YGPT+EE++T IFR 
Sbjct: 61  QNKAGAQEMLMPTIQSADLWKESGRYDGYGLEMLRIRDRQDRELLYGPTNEELITQIFRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++K+Y++LP   Y IQ KFRDE+RPRFG+MR REFLMKD+YSFD   EG+  SYNKMF +
Sbjct: 121 NVKTYKSLPLILYHIQWKFRDEIRPRFGIMRCREFLMKDSYSFDENKEGAIISYNKMFCA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+ F RLGL++IPM A++GPIGGDLSHEFI+LADTGE+Q+F SK  +D  I       +
Sbjct: 181 YLKTFERLGLRAIPMAADTGPIGGDLSHEFIILADTGESQIFTSKKILDLKISDFK---N 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK-RVSARGIEVGHIFYFGTKYSLPMS 299
           D  SL  +V+ +T  Y+AT +  N+  FD   E K ++  RGIEVGHIFYFG KYS PM 
Sbjct: 238 DSESLAKMVKSYTDIYSATDEKFNQSDFDKSVEKKDQLVTRGIEVGHIFYFGDKYSKPMK 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-D 358
           A    ++GK+  ++MGSYGIG  R+  A+IE+++    + WP SV PF +++I +    D
Sbjct: 298 ALVNSSEGKNITIEMGSYGIGVSRLAGAIIEANYKDNVMKWPASVTPFHVAVIYLGKKND 357

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +  +     +Y +L     +V  DD  E   S+F   DL+G P Q+I+G+K  S  + E 
Sbjct: 358 ETLKKKTSDVYEKLLNNSFEVLLDDTDESPASKFKNFDLIGIPYQIIIGAK-QSGDEFEF 416

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           K      +E ++L+ +IN    
Sbjct: 417 KELGE-EKEIINLDIIINKLKK 437


>gi|157828402|ref|YP_001494644.1| prolyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933112|ref|YP_001649901.1| prolyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
 gi|166980152|sp|A8GRW1|SYP_RICRS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189083508|sp|B0BXB9|SYP_RICRO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157800883|gb|ABV76136.1| prolyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908199|gb|ABY72495.1| prolyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
          Length = 426

 Score =  350 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 208/438 (47%), Positives = 299/438 (68%), Gaps = 12/438 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIENIVRLN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++            +     
Sbjct: 181 YINAFRDLGVFAIPVIADNGPIGGNLSHEFHIIAETGESTIYY-----------DKKFKI 229

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              + +  VE+  + YAA  + +       + E +  S++GIEVGHIFY G+KYS+ M+A
Sbjct: 230 LKDNPDIDVEEIKSWYAAAEEKYEVNKL-PISEQEITSSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   ++M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEYGKLTPIEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHDSK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +  E  Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+K 
Sbjct: 349 CVELAEMAYKELSDKNIEVLYDDTEARPGSKFATHDLIGSPHQIIIGPKKAANNIVELKD 408

Query: 421 RLTGIREDMSLEEVINYA 438
           R +G+ ED+ +  +++  
Sbjct: 409 RKSGVIEDIEVGSLMSVL 426


>gi|15892451|ref|NP_360165.1| prolyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
 gi|229586653|ref|YP_002845154.1| prolyl-tRNA synthetase [Rickettsia africae ESF-5]
 gi|81854111|sp|Q92I92|SYP_RICCN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511616|sp|C3PNA1|SYP_RICAE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|15619605|gb|AAL03066.1| prolyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
 gi|228021703|gb|ACP53411.1| Prolyl-tRNA synthetase [Rickettsia africae ESF-5]
          Length = 426

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 210/438 (47%), Positives = 298/438 (68%), Gaps = 12/438 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIENIVRLN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+  IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K F             
Sbjct: 181 YINAFRDLGVFVIPVIADNGPIGGNLSHEFHIIAETGESTIYYDKKFKTLKDN------- 233

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                +  VE+  + YAA  + +       + E +  S++GIEVGHIFY G+KYS+ M+A
Sbjct: 234 ----PDIDVEEIKSWYAAAEEKYEVNKL-PISEQEITSSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   ++M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEYGKLTPIEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHDSK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +  E  Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+K 
Sbjct: 349 CVELAEMAYKELSDKNIEVLYDDTEARPGSKFATHDLIGSPHQIIIGPKKAANNIVELKD 408

Query: 421 RLTGIREDMSLEEVINYA 438
           R +G+ ED+ +  +++  
Sbjct: 409 RKSGVIEDIEVGSLMSVL 426


>gi|238650930|ref|YP_002916786.1| prolyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
 gi|259511617|sp|C4K2D7|SYP_RICPU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|238625028|gb|ACR47734.1| prolyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
          Length = 426

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 209/438 (47%), Positives = 298/438 (68%), Gaps = 12/438 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIENIVRLN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++GPT+E+++TDIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMITDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K F             
Sbjct: 181 YINAFRDLGVFAIPVIADNGPIGGNLSHEFHIIAETGESTIYYDKKFKTLKDN------- 233

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                +  VE+  + YAA  + +       + E +  S++GIEVGHIFY G+KYS+ M+A
Sbjct: 234 ----PDIDVEEIKSWYAAAEEKYEVNKL-PISEQEITSSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   ++M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEYGKLTPIEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHDSK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +  E  Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ V +K 
Sbjct: 349 CVELAEMAYKELSDKNIEVLYDDTEARPGSKFATHDLIGSPHQIIIGPKKAANNIVALKD 408

Query: 421 RLTGIREDMSLEEVINYA 438
           R +G+ ED+ +  +++  
Sbjct: 409 RKSGVIEDIEVGSLMSVL 426


>gi|118595268|ref|ZP_01552615.1| prolyl-tRNA synthetase [Methylophilales bacterium HTCC2181]
 gi|118441046|gb|EAV47673.1| prolyl-tRNA synthetase [Methylophilales bacterium HTCC2181]
          Length = 411

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 181/441 (41%), Positives = 265/441 (60%), Gaps = 32/441 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK+++   +E P +AE+ SHKLM+R G+I +   G+Y+W+P+G + L  +   IREE
Sbjct: 1   MKASKFYISTFKEAPAEAELTSHKLMIRAGLIKKLGSGLYTWMPMGLRVLKKIENTIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+E+ +P +Q A+LW E+GR++ +G +ML+++DR+D+   +GPTHEEV+TD+ R+
Sbjct: 61  MQQAGAVELLMPAIQPAELWEETGRWELFGPQMLKISDRHDRPFCFGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ+KFRDE+RPRFGVMR+REFLMKDAYSF    E  KH+Y+ MF +
Sbjct: 121 ELNSYKQLPMNFYQIQMKFRDEIRPRFGVMRAREFLMKDAYSFHADIESLKHTYDLMFKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF +LGL    ++A++G IGGD SHEF VLAD+GE ++   +   DF    E     
Sbjct: 181 YNAIFTKLGLIFRAVQADNGAIGGDGSHEFHVLADSGEDEIVYDEH-SDFAANIE----- 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                                       D   +    + RGIEVGHIF  GTKYS  M A
Sbjct: 235 -------------------------VAKDHPDKRNLKTCRGIEVGHIFQLGTKYSEAMKA 269

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQ 359
           TF    GK   + MG YGIG  R++AA IE +HD KGII+P+S+APF++ +  I      
Sbjct: 270 TFINQSGKPSPMIMGCYGIGVSRIIAAAIEQNHDDKGIIFPESMAPFEVIITPIGYDKSS 329

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             ++  + +Y  L   G DV  DD G + G  F+ A+L+G P ++ V    + ++K E K
Sbjct: 330 SVKEGVDDLYQLLIAEGYDVLLDDRGLRPGIMFSEAELIGIPHRITVSETTLKENKYEYK 389

Query: 420 HRLTGIREDMSLEEVINYASH 440
           +R     E ++  ++I +   
Sbjct: 390 NRSKTDAEMIASNDLIRHLKS 410


>gi|157964462|ref|YP_001499286.1| prolyl-tRNA synthetase [Rickettsia massiliae MTU5]
 gi|157844238|gb|ABV84739.1| Prolyl-tRNA synthetase [Rickettsia massiliae MTU5]
          Length = 437

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 210/431 (48%), Positives = 295/431 (68%), Gaps = 12/431 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 10  MLLSKYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIENIVRLN 69

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++ PT+E+++TDIFR 
Sbjct: 70  MNKAGALEILMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFSPTNEDMITDIFRH 129

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 130 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYKA 189

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+ +IP+ A++GPIGG+LSHEF ++A+TGE+ ++  K F             
Sbjct: 190 YINAFRDLGVFAIPVIADNGPIGGNLSHEFHIIAETGESTIYYDKKFKTLKDN------- 242

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                +  VE+  + YAA  + H       + E +  S++GIEVGHIFY G+KYS+ M+A
Sbjct: 243 ----PDIDVEEIKSWYAAAEEKHEVNKL-PISEQEITSSKGIEVGHIFYIGSKYSVNMNA 297

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   ++M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 298 LINDEHGKLTPIEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHDSK 357

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +  E  Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+K 
Sbjct: 358 CVELAEMAYKELSDKNIEVLYDDTEARPGSKFATHDLIGSPHQIIIGPKKAANNIVELKD 417

Query: 421 RLTGIREDMSL 431
           R +G+ ED+ +
Sbjct: 418 RKSGVIEDIEV 428


>gi|73666953|ref|YP_302969.1| prolyl-tRNA synthetase [Ehrlichia canis str. Jake]
 gi|114152194|sp|Q3YSD4|SYP_EHRCJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|72394094|gb|AAZ68371.1| Prolyl-tRNA synthetase [Ehrlichia canis str. Jake]
          Length = 424

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 200/440 (45%), Positives = 284/440 (64%), Gaps = 16/440 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y++P L+E   D  + SHK  +R G+I Q + GIY+WLPLG + L N+  I+REE
Sbjct: 1   MRLSNYYIPTLKETSADVSVVSHKYSIRAGLIKQIASGIYTWLPLGLRVLRNIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA+E+ +P +Q A LW ESGRYD YG EMLR+ DRN + M++GPTHEEV+TD  R+
Sbjct: 61  MNKSGALEVLMPLIQPASLWKESGRYDDYGSEMLRITDRNQREMLFGPTHEEVITDTLRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + S++NLP T YQIQ KFRDELRPR+G+MR REFLMKDAYSFD    G+  SYN MF +
Sbjct: 121 TLTSHKNLPITLYQIQWKFRDELRPRYGIMRCREFLMKDAYSFDKDLSGAILSYNLMFKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF  LGL  I ++AESGPIGG+LSHEF VLA++GE+ ++  ++ ++           
Sbjct: 181 YIKIFKNLGLTPIAVKAESGPIGGNLSHEFHVLANSGESTLYYDQEIIEL---------- 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            + S N  +E+    Y A  D+H+ +    +P N   +++GIE+GHIFY G KYS PM+A
Sbjct: 231 -MNSDNIDIERIKNTYTAADDMHDPQ-TCPIPPNNIKTSKGIEIGHIFYLGDKYSKPMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   +     +QMG YGIG  R+VAA+IE  HD KGI WP+ ++PFK SL+N+ + +  
Sbjct: 289 NFCD-NNDSKPLQMGCYGIGISRLVAAIIEVFHDNKGITWPEEISPFKFSLVNLYSSNDK 347

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C    E ++ +L     DV +DD  +  G +    DLLG P Q+I+G   V    +E+++
Sbjct: 348 CIKVAENLHMQLHN---DVLYDDTDDSPGIKLTRTDLLGMPWQIIIGKSTVEQDLIEVRN 404

Query: 421 RLTGIREDMSLEEVINYASH 440
           R    +  +S+E+ +     
Sbjct: 405 RSNKDKFLISVEQFLKKFKK 424


>gi|209964526|ref|YP_002297441.1| prolyl-tRNA synthetase [Rhodospirillum centenum SW]
 gi|209957992|gb|ACI98628.1| prolyl-tRNA synthetase ProS [Rhodospirillum centenum SW]
          Length = 404

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 222/408 (54%), Positives = 300/408 (73%), Gaps = 6/408 (1%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI Q S GIY+WLPLG + L  V  I+REEQ+R GA EM +PT+QSADLW +SGRY++YG
Sbjct: 1   MIRQTSAGIYAWLPLGWRVLQKVAQIVREEQDRAGAQEMLMPTIQSADLWKQSGRYEAYG 60

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KEMLR+ DR+D+ M+YGPT+EE++TDIF++ +KSY++LP   Y IQ KFRDE+RPRFG+M
Sbjct: 61  KEMLRITDRHDREMLYGPTNEEMITDIFKTFVKSYKDLPKNLYHIQWKFRDEIRPRFGLM 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R REFLMKD YSFDL  EG+K SY +MF++YLR F R+G+K+IPMRA++GPIGGDLSHEF
Sbjct: 121 RGREFLMKDNYSFDLDVEGAKLSYRRMFLAYLRTFARMGIKAIPMRADTGPIGGDLSHEF 180

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I+LA+TGE+QVFC + +++  + +E    D    L    +++T+ YAAT ++H+     +
Sbjct: 181 IILAETGESQVFCDRRWLELDVLAEAPAPDS--DLKEFFDRYTSIYAATEEMHDAAKAPA 238

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                 V+ARGIEVGHIFYFG KYS PM A   G DG+   V+MGSYGIG  RVVAA+IE
Sbjct: 239 ----DLVTARGIEVGHIFYFGKKYSQPMEAIVAGPDGQPVTVEMGSYGIGVSRVVAAIIE 294

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +SHD +GIIWP+ VAPFK++++N+K  D  C   CE +YARLS    +V +DD  E+ G+
Sbjct: 295 ASHDEQGIIWPEPVAPFKLAIVNLKVDDAECSRVCEDLYARLSGAKVEVLYDDRNERPGA 354

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +FA  DL+G P Q+ VG + +    VE+K R TG + ++S+E+ +   
Sbjct: 355 KFADMDLIGVPWQLTVGPRGLKAGVVELKRRATGEKFELSVEDALARV 402


>gi|34580554|ref|ZP_00142034.1| prolyl-tRNA synthetase [Rickettsia sibirica 246]
 gi|28261939|gb|EAA25443.1| prolyl-tRNA synthetase [Rickettsia sibirica 246]
          Length = 426

 Score =  345 bits (884), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 207/438 (47%), Positives = 297/438 (67%), Gaps = 12/438 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKYFLP+L+E P +A++ SHKLMLR+GMI Q + GIY+WLPLG K L N+  I+R  
Sbjct: 1   MLLSKYFLPVLKEEPSEAQVTSHKLMLRSGMIRQQAAGIYTWLPLGLKVLKNIEHIVRLN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A LW+ESGR+D+YGKEML+  DR+D  +++GPT+E+++ DIFR 
Sbjct: 61  MNKAGALEVLMPCIQPAHLWMESGRFDNYGKEMLKFQDRHDNTLLFGPTNEDMIMDIFRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY++LP   Y IQ KFRDE+RPRFGVMR REFLMKDAYSFD+  E +  +YN+M+ +
Sbjct: 121 NIKSYKDLPKNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDINEENAVKTYNQMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F  LG+  IP+ A++GPIGG+LSHEF V+A+TGE+ ++            +     
Sbjct: 181 YINAFRDLGVFVIPVIADNGPIGGNLSHEFHVIAETGESTIYY-----------DKKFKI 229

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              + +  VE+  + YAA  + +       + E +  S++GIEVGHIFY G+KYS+ M+A
Sbjct: 230 LKDNPDIDVEEIKSWYAAAEEKYEVNKL-PISEQEITSSKGIEVGHIFYIGSKYSVNMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 GK   ++M SYGIG  R+VAA+IE++ D KGIIWP SVAPFK+SLIN+  HD  
Sbjct: 289 LINDEYGKLTPIEMSSYGIGISRLVAAIIEANCDEKGIIWPSSVAPFKVSLINLNIHDSK 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +  +  Y  LS    +V +DD   + GS+FA  DL+G P Q+I+G K  +++ VE+K 
Sbjct: 349 CVELADMAYKELSDKNIEVLYDDTEARPGSKFATHDLIGSPHQIIIGPKKAANNIVELKD 408

Query: 421 RLTGIREDMSLEEVINYA 438
           R +G+ ED+ +  +++  
Sbjct: 409 RKSGVIEDIEVGSLMSVL 426


>gi|306841942|ref|ZP_07474620.1| prolyl-tRNA synthetase [Brucella sp. BO2]
 gi|306287975|gb|EFM59383.1| prolyl-tRNA synthetase [Brucella sp. BO2]
          Length = 400

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 227/399 (56%), Positives = 301/399 (75%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           +P+G K L+ V  IIREEQNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR ++
Sbjct: 1   MPIGLKVLNKVCTIIREEQNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQER 60

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            M++GPT+EE++TDIFRS+++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYS
Sbjct: 61  EMLFGPTNEEMVTDIFRSYVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYS 120

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           FDL  EG+K +Y +MFVSYLR F R+GL++IPMRA++GPIGGDLSHEFI+LA+TGE+QV+
Sbjct: 121 FDLDYEGAKMAYYRMFVSYLRTFARVGLQAIPMRADTGPIGGDLSHEFIILAETGESQVY 180

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           C + ++D  +P  +TDF +   L  IV +WT PYAAT ++H+E  +  +    +VSARGI
Sbjct: 181 CDRAYLDLAVPGADTDFRNDAQLTDIVTRWTTPYAATDEMHDEADWAKVKPESQVSARGI 240

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           EVGHIF+FGTKYS PM A  +G DGK+H V MGSYGIG  R+VAA IE+SHD  GI+WP 
Sbjct: 241 EVGHIFHFGTKYSEPMGAKVQGPDGKEHLVSMGSYGIGPSRLVAAAIEASHDDAGIVWPK 300

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           ++APF   ++N+K  D+ C    EK+Y  L+  G D   DD  E+ G++FA  DL+G P 
Sbjct: 301 AIAPFGAGIVNMKPGDEGCDGVSEKLYEALTNAGVDPLLDDKDERPGAKFATMDLIGLPT 360

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           QVIVG + V+  +VE+K R TG R+ + ++  IN  + +
Sbjct: 361 QVIVGPRGVAAGEVEVKDRKTGERQSLGIDAAINMLTAQ 399


>gi|57239072|ref|YP_180208.1| prolyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58579015|ref|YP_197227.1| prolyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|81819260|sp|Q5HBI6|SYP_EHRRW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|57161151|emb|CAH58064.1| prolyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417641|emb|CAI26845.1| Prolyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
          Length = 426

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 203/440 (46%), Positives = 286/440 (65%), Gaps = 15/440 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY++P L+E P D  + SH   LR+G+I Q + GIY+WLPLG K L N+  +I+EE
Sbjct: 1   MRLSKYYIPTLKETPADVSVTSHVYSLRSGLIRQVASGIYAWLPLGLKVLKNIENVIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++G +E+ +P +Q A LW ESGRY+ YG EMLR+ DRN++ M++GPTHEEV+TD+ R+
Sbjct: 61  MNKSGILEVLMPLIQPASLWQESGRYNDYGSEMLRIKDRNNREMVFGPTHEEVVTDLLRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+NLP   YQ+Q KFRDELRPR+G+MR REFLMKDAYSFD     +  SYN MF  
Sbjct: 121 TLTSYKNLPLILYQVQWKFRDELRPRYGIMRCREFLMKDAYSFDKDFNSAIESYNLMFKV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF RLGL  I ++A+SGPIGG+LSHEF +LA++GE+ ++  +D             +
Sbjct: 181 YIQIFRRLGLTPIAVKADSGPIGGNLSHEFHILANSGESTLYYDQDI-----------IN 229

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            I + N  +E+    Y A  D+HN +    +P +    ++GIE+GHIFY G KYS  M+A
Sbjct: 230 LINNDNIDIEKIKNTYTAADDLHNSE-TCPIPASNIKKSKGIEIGHIFYLGDKYSKTMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   + +   + MG YGIG  R+V A+IE SHD  GIIWP+ +APFK SL+N+ + ++ 
Sbjct: 289 VFS-QNNETQLLHMGCYGIGVSRLVGAIIEVSHDNNGIIWPEEIAPFKFSLVNVFSANKE 347

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C +  E +YA+L     DV +DD  +  G +FA  DLLG P QVI+G   +    +E++ 
Sbjct: 348 CHNISENLYAKLGSN--DVLYDDTEDSTGIKFARMDLLGMPWQVIIGKTTIEHGLIEVRQ 405

Query: 421 RLTGIREDMSLEEVINYASH 440
           R +     MS E+ +N    
Sbjct: 406 RSSKKSLLMSTEQFLNNFKK 425


>gi|58617074|ref|YP_196273.1| prolyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
 gi|81311371|sp|Q5FHL5|SYP_EHRRG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|58416686|emb|CAI27799.1| Prolyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
          Length = 426

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 203/440 (46%), Positives = 288/440 (65%), Gaps = 15/440 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY++P L+E P D  + SH   LR+G+I Q + GIY+WLPLG K L N+  +I+EE
Sbjct: 1   MRLSKYYIPTLKETPTDVSVTSHVYSLRSGLIRQVASGIYAWLPLGLKVLKNIENVIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++G +E+ +P +Q A LW ESGRY+ YG EMLR+ DRN++ M++GPTHEEV+TD+ R+
Sbjct: 61  MNKSGILEVLMPLIQPASLWQESGRYNDYGSEMLRIKDRNNREMVFGPTHEEVVTDLLRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+NLP   YQ+Q KFRDELRPR+G+MR REFLMKDAYSFD     +  SYN MF  
Sbjct: 121 TLTSYKNLPLILYQVQWKFRDELRPRYGIMRCREFLMKDAYSFDKDFNSAIESYNLMFKV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF RLGL  I ++A+SGPIGG+LSHEF +LA++GE+ ++  +D             +
Sbjct: 181 YIQIFRRLGLTPIAVKADSGPIGGNLSHEFHILANSGESTLYYDQDI-----------IN 229

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            I + N  +E+    Y A  D+HN +    +P +   +++GIE+GHIFY G KYS  M+A
Sbjct: 230 LINNDNIDIEKIKNTYTAADDLHNSE-TCPIPASNIKTSKGIEIGHIFYLGDKYSKTMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   + +   + MG YGIG  R+V A+IE SHD  GIIWP+ +APFK SL+N+ + ++ 
Sbjct: 289 AFS-QNNETQLLHMGCYGIGVSRLVGAIIEVSHDNNGIIWPEEIAPFKFSLVNVFSANKE 347

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           CR+  E +YA+L     DV +DD  +  G +F+  DLLG P QVI+G   +    +E++ 
Sbjct: 348 CRNISENLYAKLDSN--DVLYDDTEDSTGIKFSRMDLLGMPWQVIIGKTTIEHGLIEVRQ 405

Query: 421 RLTGIREDMSLEEVINYASH 440
           R +     MS E+ +N    
Sbjct: 406 RSSKKSLLMSTEQFLNNFKK 425


>gi|56416716|ref|YP_153790.1| prolyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
 gi|81821288|sp|Q5PAZ5|SYP_ANAMM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56387948|gb|AAV86535.1| prolyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
          Length = 425

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 202/439 (46%), Positives = 279/439 (63%), Gaps = 15/439 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P +++   D  +ASHK  LR G++ Q++ G+Y+WLPLG K L  +  I+REE
Sbjct: 1   MRLSECYVPTMKDVSSDVVVASHKYSLRAGLVRQNASGLYTWLPLGLKVLRTIERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +G +E+ +P++Q ADLW ES RYDSYG EMLR+ DR+ + M++GPTHEE ++D+ RS
Sbjct: 61  MDSSGFLEILMPSVQPADLWRESLRYDSYGPEMLRMQDRSGREMVFGPTHEEAISDVVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR+LP   YQIQ KFRDELRPR G+MR REFLMKDAYSFD+  EG   SY  +F +
Sbjct: 121 SLKSYRDLPINLYQIQWKFRDELRPRHGIMRGREFLMKDAYSFDVDFEGVMRSYENVFSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL  I  +A+SG IGG +SHEF VL  TGE+ V+  K  +D           
Sbjct: 181 YFRIFRRLGLVPIAAKADSGAIGGSISHEFHVLVPTGESTVYHDKKALDLS--------- 231

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              +     E+  + YAAT D H+ +     P + +VS +GIEV H+FY G +YS PM+ 
Sbjct: 232 --KNDYCTTEEIASVYAATEDAHDPQNCGVDPNDLQVS-KGIEVAHVFYLGDRYSAPMNV 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   DG   +  MG YGIG  R+VAA+IE  HD  GI WP+S+APFK+ ++N+   ++ 
Sbjct: 289 KFHDKDGNSAHALMGCYGIGISRLVAAIIEVFHDDVGIRWPESIAPFKVGIVNLLTTNED 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+   E IYA L+       +DD  +  G + A  DLLG P QVI+G+ FV D  VE+K+
Sbjct: 349 CKTTAETIYAALAD---SSLYDDSTDSPGVKLARMDLLGMPWQVIIGNSFVKDKVVELKN 405

Query: 421 RLTGIREDMSLEEVINYAS 439
           R  G  E  +++ +I    
Sbjct: 406 RANGATERCTVDALIARMQ 424


>gi|254455357|ref|ZP_05068786.1| prolyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082359|gb|EDZ59785.1| prolyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 444

 Score =  334 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 205/449 (45%), Positives = 287/449 (63%), Gaps = 9/449 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F+PIL+ NP +A+I SH+LMLR GMI Q S GIYSWLPLG K +  +  I+REE
Sbjct: 1   MLLSKSFIPILKNNPSEAKIKSHQLMLRVGMIKQASAGIYSWLPLGFKVMKKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q++ GA E+ +PT+QS+++W ESGRYD YG+EMLR+ DR ++ M+YGPT+EE +T+IFRS
Sbjct: 61  QDKIGAQEILMPTIQSSEIWKESGRYDDYGEEMLRIKDRQNREMLYGPTNEEQVTEIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE+RPRFG+MR REF MKDAYSFD+T E +  SYNK F+S
Sbjct: 121 SLKSYKSLPQLLYHIQWKFRDEIRPRFGIMRGREFYMKDAYSFDITDEDAFFSYNKFFLS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLR F RL L +IPM A++GPIGG+LSHEFI+LADTGE+++F  K   D           
Sbjct: 181 YLRTFKRLSLTAIPMAADTGPIGGNLSHEFIILADTGESKIFTDKRIFDLTNDDTEL--- 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +  SL  + +++   Y+ T +  N+  F+  + E  R+  +GIEVGHIFYFG KYS  M 
Sbjct: 238 EKSSLEQMRKRYEKFYSVTDEKFNKVEFEKMVSEENRLITKGIEVGHIFYFGDKYSKAMD 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS---LINIKA 356
                  GK  +V+MGSYGIG  R+V A+IE+ +D +  I    ++        +  I  
Sbjct: 298 TAVDLPGGKKDFVKMGSYGIGVSRLVGAIIEAKYDDENEIMKWPLSVAPYDIALIPMINK 357

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +D    +   KI + L +   +   DD  E   S+    +L+G P Q+I+G K      +
Sbjct: 358 NDNSALEKANKINSELIRNNIEAIIDDTDENYSSKIKKMNLIGAPYQIIIGKKS-DGDLL 416

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E K    G  +++SLE++I   + + ++N
Sbjct: 417 EFKE-PGGETQNLSLEKIIEIITKQKASN 444


>gi|255004184|ref|ZP_05278985.1| prolyl-tRNA synthetase [Anaplasma marginale str. Virginia]
          Length = 425

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 201/439 (45%), Positives = 279/439 (63%), Gaps = 15/439 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P +++   D  +ASHK  LR G++ Q++ G+Y+WLPLG K L  +  I+REE
Sbjct: 1   MRLSECYVPTMKDVSSDVVVASHKYSLRAGLVRQNASGLYTWLPLGLKVLRTIEHIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +G +E+ +P++Q ADLW ES RYDSYG EMLR+ DR+ + M++GPTHEE ++D+ RS
Sbjct: 61  MDSSGFLEILMPSVQPADLWRESLRYDSYGPEMLRMQDRSGREMVFGPTHEEAISDVVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR+LP   YQIQ KFRDELRPR G+MR REFLMKDAYSFD+  EG   SY  +F +
Sbjct: 121 SLKSYRDLPINLYQIQWKFRDELRPRHGIMRGREFLMKDAYSFDVDFEGVMRSYENVFSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL  I  +A+SG IGG +SHEF VL  TGE+ V+  K  +D           
Sbjct: 181 YFRIFRRLGLVPIAAKADSGAIGGSISHEFHVLVPTGESTVYHDKKALDLS--------- 231

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              +     E+  + YAAT D H+ +     P + +VS +GIEV H+FY G +YS PM+ 
Sbjct: 232 --KNDYCTTEEIASVYAATEDAHDPQNCGVDPNDLQVS-KGIEVAHVFYLGDRYSAPMNV 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   +G   +  MG YGIG  R+VAA+IE  HD  GI WP+S+APFK+ ++N+   ++ 
Sbjct: 289 KFHDKNGNSAHALMGCYGIGISRLVAAIIEVFHDDVGIRWPESIAPFKVGIVNLLTTNED 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+   E IYA L+       +DD  +  G + A  DLLG P QVI+G+ FV D  VE+K+
Sbjct: 349 CKTTAETIYAALAD---SSLYDDSTDSPGVKLARMDLLGMPWQVIIGNSFVKDKVVELKN 405

Query: 421 RLTGIREDMSLEEVINYAS 439
           R  G  E  +++ +I    
Sbjct: 406 RANGATEKCTVDALIARMQ 424


>gi|222475082|ref|YP_002563497.1| prolyl-tRNA synthetase (proS) [Anaplasma marginale str. Florida]
 gi|254994925|ref|ZP_05277115.1| prolyl-tRNA synthetase [Anaplasma marginale str. Mississippi]
 gi|255003060|ref|ZP_05278024.1| prolyl-tRNA synthetase [Anaplasma marginale str. Puerto Rico]
 gi|222419218|gb|ACM49241.1| prolyl-tRNA synthetase (proS) [Anaplasma marginale str. Florida]
          Length = 425

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 201/439 (45%), Positives = 280/439 (63%), Gaps = 15/439 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P +++   D  +ASHK  LR G++ Q++ G+Y+WLPLG K L  +  I+REE
Sbjct: 1   MRLSECYVPTMKDVSSDVVVASHKYSLRAGLVRQNASGLYTWLPLGLKVLRTIEHIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +G +E+ +P++Q ADLW ES RYDSYG EMLR+ DR+ + M++GPTHEE ++D+ RS
Sbjct: 61  MDSSGFLEILMPSVQPADLWRESLRYDSYGPEMLRMQDRSGREMVFGPTHEEAISDVVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR+LP   YQIQ KFRDELRPR G+MR REFLMKDAYSFD+  EG+  SY  +F +
Sbjct: 121 SLKSYRDLPINLYQIQWKFRDELRPRHGIMRGREFLMKDAYSFDVDFEGAMRSYENVFSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL  I  +A+SG IGG +SHEF VL  TGE+ V+  K  +D           
Sbjct: 181 YFRIFRRLGLVPIAAKADSGAIGGSISHEFHVLVPTGESTVYHDKKALDLS--------- 231

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              +     E+  + YAAT D H+ +     P + +VS +GIEV H+FY G +YS PM+ 
Sbjct: 232 --KNDYCTTEEIASVYAATEDAHDPQNCGVDPNDLQVS-KGIEVAHVFYLGDRYSAPMNV 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   +G   +  MG YGIG  R+VAA+IE  HD  GI WP+S+APFK+ ++N+   ++ 
Sbjct: 289 KFHDKNGNSAHALMGCYGIGISRLVAAIIEVFHDDVGIRWPESIAPFKVGIVNLLTTNED 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+   E IYA L+       +DD  +  G + A  DLLG P QVI+G+ FV D  VE+K+
Sbjct: 349 CKTTAETIYAALAD---SSLYDDSTDSPGVKLARMDLLGMPWQVIIGNSFVKDKVVELKN 405

Query: 421 RLTGIREDMSLEEVINYAS 439
           R  G  E  +++ +I    
Sbjct: 406 RANGATEKCTVDALIARMQ 424


>gi|148284536|ref|YP_001248626.1| prolyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
 gi|146739975|emb|CAM80015.1| prolyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
          Length = 433

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 201/440 (45%), Positives = 290/440 (65%), Gaps = 11/440 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E+P  AEI SHKLMLR GMI Q   GIY+WLPLG K L N+  I+R+ 
Sbjct: 1   MRLSQYFLPLLKEDPAGAEIISHKLMLRAGMIKQACAGIYNWLPLGIKVLQNIQDIVRKN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N     E+ +P +Q A LW ES RY++YGKEML++ DR+D  +++GPT+EE++TDIFRS
Sbjct: 61  MNAAQCTELLMPCIQPASLWKESSRYNAYGKEMLKIKDRHDNDLLFGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY++LP  FY IQ KFRDE+RPRFGVMRSREF+MKDAYSFD+    +  SYN M+++
Sbjct: 121 CIQSYKDLPKNFYHIQWKFRDEIRPRFGVMRSREFIMKDAYSFDIDQTSAIQSYNLMYLT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF  LGLK IP++A++G IGG LSHEF ++  TG+++++      +    +++   +
Sbjct: 181 YLKIFKDLGLKVIPVQADNGAIGGKLSHEFHIITATGDSKIYYDSTKFNPFDYNQDLSLN 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L  + E             ++   + +  +K  +  GIEVGHIFYFGTKYS  M A
Sbjct: 241 KLEQLYIVTED-----------KHKTYQNQISNDKISTISGIEVGHIFYFGTKYSELMKA 289

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  +GK   V+MGSYGIG  R++ A+IE++HD  GIIWP +VAPFK+S+IN+  ++  
Sbjct: 290 CIQMQNGKLTAVEMGSYGIGISRLIGAIIEANHDQYGIIWPQNVAPFKVSVINLLPNNDK 349

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+    ++Y  L++   D   DD     G + AV DL+G P Q+I+G  F+  S +E K+
Sbjct: 350 CKQTSNQLYQILTQQKTDALLDDTSSSAGHKLAVHDLIGIPYQIIIGKNFIETSTIEFKY 409

Query: 421 RLTGIREDMSLEEVINYASH 440
           R     + +S++ +IN  + 
Sbjct: 410 RHNHQLQKLSIDALINRLTE 429


>gi|189182913|ref|YP_001936698.1| prolyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
 gi|189179684|dbj|BAG39464.1| prolyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
          Length = 433

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 199/440 (45%), Positives = 289/440 (65%), Gaps = 11/440 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP+L+E+P  AEI SHKLMLR GMI Q   GIY+WLPLG K L N+  I+R+ 
Sbjct: 1   MRLSQYFLPLLKEDPAGAEIISHKLMLRAGMIKQACAGIYNWLPLGIKVLQNIQDIVRKN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N    IE+ +P +Q A LW ES RY++YGKEML++ DR+D  +++GPT+EE++TDIFRS
Sbjct: 61  MNAAQCIELLMPCIQPASLWKESSRYNAYGKEMLKIKDRHDNDLLFGPTNEELITDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY++LP  FY IQ KFRDE+RPRFGVMRSREF+MKDAYSFD+    +  SYN M+++
Sbjct: 121 SIQSYKDLPKNFYHIQWKFRDEIRPRFGVMRSREFIMKDAYSFDIDQASAIQSYNLMYLT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF  LGLK IP++A++G IGG LSHEF ++  TG+++++      +    +++   +
Sbjct: 181 YLKIFKDLGLKVIPVQADNGAIGGKLSHEFHIITATGDSKIYYDSTKFNPFDYNQDLSLN 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +  L  + E             ++   + +  +   +  GIEVGHIFYFGTKYS  M A
Sbjct: 241 KLEQLYIVTED-----------KHKTDQNQISNDTISTISGIEVGHIFYFGTKYSELMKA 289

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +  +GK   V+MGSYGIG  R++ A+IE++HD  GIIWP +VAPFK+S+IN+  ++  
Sbjct: 290 CIQLQNGKLTAVEMGSYGIGISRLIGAIIEANHDEYGIIWPQNVAPFKVSVINLLPNNDK 349

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+    ++Y  L++   D   DD     G + A  DL+G P Q+I+G  F+  + +E K+
Sbjct: 350 CKQTSNQLYQILTQQKTDALLDDTSSSAGHKLAAHDLIGIPYQIIIGKNFIETATIEFKY 409

Query: 421 RLTGIREDMSLEEVINYASH 440
           R     + +S++ +IN  + 
Sbjct: 410 RHNQQLQKLSIDALINQLTE 429


>gi|71083600|ref|YP_266319.1| prolyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1062]
 gi|114152227|sp|Q4FM73|SYP_PELUB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71062713|gb|AAZ21716.1| proline-tRNA ligase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 444

 Score =  329 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 204/449 (45%), Positives = 280/449 (62%), Gaps = 9/449 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F+PIL+ NP +A+I SH+LMLR GMI Q S GIYSWLPLG K +  +  I+REE
Sbjct: 1   MYISKSFIPILKNNPSEAKIKSHQLMLRVGMIKQSSAGIYSWLPLGFKVMKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QN+ GA E+ +PT+Q +D+W ESGRYD YG EMLR+ DR  + M+YGPT+EE++TDIFRS
Sbjct: 61  QNKIGAQEILMPTIQPSDIWKESGRYDDYGDEMLRIKDRQGREMLYGPTNEELVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE+RPRFG+MR REF MKDAYSFD+  E +  SYNK F S
Sbjct: 121 SVKSYKSLPQLLYHIQWKFRDEVRPRFGIMRGREFYMKDAYSFDVNDEDATFSYNKFFFS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+ F RL L +IPM A++GPIGG+LSHEFI+LADTGE+++F  K   D           
Sbjct: 181 YLKTFKRLELSAIPMAADTGPIGGNLSHEFIILADTGESKIFTDKRVFDL---GSEGTVL 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D  SL  + +++   YA   +  N+  F + + E  R+  +GIEVGHIFYFG KYS  ++
Sbjct: 238 DRQSLQDLRKKYEQYYAVADEKFNKNEFEEKVSEENRLITKGIEVGHIFYFGDKYSKALN 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI---SLINIKA 356
           A      GK  +V+MGSYGIG  R+V A+IE+ +D K  I     +        +  I  
Sbjct: 298 AAVDLPGGKKDFVKMGSYGIGVSRLVGAIIEAKYDQKDEIMKWPFSVAPYELAIIPMINK 357

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +D    D   K++        D   DDM E + S+    +L+G P Q+I+G     D+ +
Sbjct: 358 NDTSALDKANKLFKHFESKNIDTIIDDMDENLSSKIKKFNLIGVPYQIILGKNS-EDNLL 416

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E K  +    + ++L+++    + +   N
Sbjct: 417 EFKE-IGKDPKSLTLDQITQILTEQKLKN 444


>gi|251772092|gb|EES52662.1| prolyl-tRNA synthetase [Leptospirillum ferrodiazotrophum]
          Length = 429

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 177/443 (39%), Positives = 250/443 (56%), Gaps = 28/443 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++       E+P +AE  SH+LMLR G + + + G+Y +LP G + L  V  I+REE
Sbjct: 1   MRTTRLPYVTFHEDPAEAETVSHRLMLRGGYVRKVAGGLYDFLPFGARVLRRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ A++W ++GR++ YGKE+ RL DR+D++   GPTHEEV+T++   
Sbjct: 61  MDRAGAFEILMPALQPAEMWEKTGRWEKYGKELFRLTDRHDRSFALGPTHEEVVTELASG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  + E     Y  M  +
Sbjct: 121 LLNSYRQLPVTLYQIQTKFRDEMRPRFGLMRGREFVMKDAYSFARSKEEGAECYRIMQEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    + A++G IGG  SHEF+VLA +GE  V                   
Sbjct: 181 YFRIFARLGLSVRMVEADTGNIGGYSSHEFMVLAPSGEDTVVFCGSC------------- 227

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                          YA+  ++        L +        IEVGH+F  G +YS PM A
Sbjct: 228 --------------RYASNVELAGAATHCPLCQAPLERTTAIEVGHVFDLGDRYSAPMEA 273

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   DG++    MG YGIG  R++AA IE SHD  GIIWP ++APF ++++ +   D  
Sbjct: 274 GFLDPDGRETLFHMGCYGIGVSRLLAAAIEQSHDDAGIIWPTAMAPFAVAVLPLGGRDAE 333

Query: 361 CRDACEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   +I   L +    +V  DD   + G +FA ADL GFP+QVI+G K + +++ EIK
Sbjct: 334 LSEKALRIAGLLEERFPEEVLVDDRDLRAGVKFADADLCGFPIQVILGEKGLRENRAEIK 393

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            R +G R  + L  +  + +   
Sbjct: 394 VRSSGERNTVDLSALSEWIADHL 416


>gi|269958866|ref|YP_003328655.1| prolyl-tRNA synthetase [Anaplasma centrale str. Israel]
 gi|269848697|gb|ACZ49341.1| prolyl-tRNA synthetase [Anaplasma centrale str. Israel]
          Length = 425

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 198/437 (45%), Positives = 283/437 (64%), Gaps = 15/437 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P +++   D  +ASH+  LR G++ Q++ G+Y+WLPLG K L  +  I+REE
Sbjct: 1   MRLSECYVPTMKDVSSDVIVASHRYSLRAGLVRQNASGLYTWLPLGLKVLRGIERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +G +E+ +P++Q A+LW ES RYDSYG EMLR+ DR+ + M++GPTHEE ++D+ RS
Sbjct: 61  MDSSGFLEILMPSVQPAELWRESQRYDSYGLEMLRMQDRSGREMVFGPTHEESISDVVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR+LP + YQ+Q KFRDELRPR G+MR REFLMKDAYSFD+  E +  SY+ +F +
Sbjct: 121 SLKSYRDLPISLYQMQWKFRDELRPRHGIMRCREFLMKDAYSFDVDFESAMRSYSNVFSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRIF RLGL +I  +A+SG IGG  SHEF VL  TGE+ V+  +  +D    S      
Sbjct: 181 YLRIFRRLGLVAIAAKADSGAIGGSTSHEFHVLVPTGESTVYHDRKALDISRKS------ 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                +  +E  T  YAAT D H+ +     P++ +VS +GIEV H+FY G +YS PM+ 
Sbjct: 235 -----DCSMEDVTGVYAATEDAHDPQNCGVHPDDLQVS-KGIEVAHVFYLGDRYSAPMNV 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F    G  +   MG YGIG  R+VAA+IE  HD  GI WP+S+APF++ ++N+ A +  
Sbjct: 289 KFHDKSGNSNNALMGCYGIGISRLVAAIIEVFHDDVGIRWPESIAPFRVGIVNLLATNGD 348

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+   E IY  L+       +DD  +  G + A  DLLG P QVI+G+ FV D  VE+K+
Sbjct: 349 CKTTAETIYTALAD---SSLYDDSADSPGVKLARMDLLGMPWQVIIGNSFVKDKVVELKN 405

Query: 421 RLTGIREDMSLEEVINY 437
           R +G+ E  ++  +I  
Sbjct: 406 RASGVTEKCTVGSLIAR 422


>gi|91761979|ref|ZP_01263944.1| prolyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91717781|gb|EAS84431.1| prolyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 444

 Score =  327 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 204/449 (45%), Positives = 279/449 (62%), Gaps = 9/449 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F+PIL+ NP +A+I SH+LMLR GMI Q S GIYSWLPLG K +  +  I+REE
Sbjct: 1   MYISKSFIPILKNNPSEAKIKSHQLMLRVGMIKQSSAGIYSWLPLGFKVMKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QN  GA E+ +PT+Q +D+W ESGRYD YG EMLR+ DR  + M+YGPT+EE++TDIFRS
Sbjct: 61  QNTIGAQEILMPTIQPSDIWKESGRYDDYGDEMLRIKDRQGREMLYGPTNEELVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   Y IQ KFRDE+RPRFG+MR REF MKDAYSFD+  E +  SYNK F S
Sbjct: 121 SVKSYKSLPQLLYHIQWKFRDEVRPRFGIMRGREFYMKDAYSFDVNDEDATFSYNKFFFS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+ F RL L +IPM A++GPIGG+LSHEFI+LADTGE+++F  K   D           
Sbjct: 181 YLKTFKRLELSAIPMAADTGPIGGNLSHEFIILADTGESKIFTDKRVFDL---GSEGTVL 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D  SL  + +++   YA   +  N+  F + + E  R+  +GIEVGHIFYFG KYS  ++
Sbjct: 238 DRQSLQDLRKKYEQYYAVADEKFNKNEFEEKVSEENRLITKGIEVGHIFYFGDKYSKALN 297

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI---SLINIKA 356
           A      GK  +V+MGSYGIG  R+V A+IE+ +D K  I     +        +  I  
Sbjct: 298 AAVDLPGGKKDFVKMGSYGIGVSRLVGAIIEAKYDQKDEIMKWPFSVAPYELAIIPMINK 357

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +D    D   K++        D   DDM E + S+    +L+G P Q+I+G     D+ +
Sbjct: 358 NDTSALDKANKLFKHFESKNIDTIIDDMDENLSSKIKKFNLIGVPYQIILGKNS-EDNLL 416

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E K  +    + ++L+++    + +   N
Sbjct: 417 EFKE-IGKDPKSLTLDQITQILTEQKLKN 444


>gi|78777058|ref|YP_393373.1| prolyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
 gi|114152275|sp|Q30S93|SYP_SULDN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78497598|gb|ABB44138.1| Prolyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
          Length = 435

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 161/445 (36%), Positives = 242/445 (54%), Gaps = 12/445 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MRRS+ F+P  +E P DA + SHK ++R G I+Q   G+Y++LPLG+  L+ + A+++EE
Sbjct: 1   MRRSRAFIPTAKEAPSDATLPSHKFLVRGGFINQQGAGLYNFLPLGKIVLEKIRAVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +  +    LW  SGR ++ GKEMLR+ DR+    +  PT+EE M ++ ++
Sbjct: 61  LDLAGCNEVQLSFVTPIGLWERSGRSEAMGKEMLRINDRHQNEFVLSPTNEEAMVELVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP   YQI  KFRDE RPR+G++R REFLMKD YSF  + +     ++ M  +
Sbjct: 121 RVTSYKDLPLNLYQINTKFRDEARPRYGLLRGREFLMKDGYSFHSSTQDMIREFDLMEET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDF 239
           Y +IF RLGL    + A+SG IGGD S EF VLAD+GE   + C        I + +   
Sbjct: 181 YKKIFTRLGLDFRVVAADSGAIGGDGSKEFHVLADSGEDTLIVCQSCNYGANIETIDEFK 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN-KRVSARGIEVGHIFYFGTKYSLPM 298
           D I  LN           +  ++   K+             +GIEVGHIF  GTKYS  +
Sbjct: 241 DKIDELNEK---------SYEELKELKIDQKCSCGANLHFKKGIEVGHIFQLGTKYSAAL 291

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A F   +G+    +M ++GIG  R+VAA+IE +HD  G IW    AP+ ++++     D
Sbjct: 292 EANFSDENGRSKPFEMATFGIGVSRLVAAIIEQNHDESGCIWTKESAPYIVNIMVSNVKD 351

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      E +YA+L     DV +DD  E+ G +   A+L+GFP  +I+G K +    V+I
Sbjct: 352 EAQMSLGEDLYAKLRAAKVDVIFDDTKERFGFKMKDAELIGFPYTLIIG-KELEGGLVQI 410

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
             R T     +      +       
Sbjct: 411 FDRKTKESISVESSSAYDKIMELIK 435


>gi|88607069|ref|YP_505231.1| prolyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
 gi|114152168|sp|Q2GK70|SYP_ANAPZ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|88598132|gb|ABD43602.1| prolyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
          Length = 426

 Score =  323 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 196/440 (44%), Positives = 280/440 (63%), Gaps = 16/440 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+++ P ++    D   ASHK  +R G++ Q + GIY+ LPLG   L  V  IIREE
Sbjct: 1   MRLSEFYSPTVKNVSSDVVSASHKYSIRAGIVSQTASGIYTLLPLGLMVLRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +PT+Q ADLW ES RYDSYG+E++R+ DR  + M+ GPTHEEV+TD+ RS
Sbjct: 61  INAVGFSEILMPTMQPADLWKESQRYDSYGQELIRIHDRGGREMVLGPTHEEVVTDLVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR+LP   YQIQ KFRDELRPR G++RSREFLM DAYSFD   E +  +Y+ +F +
Sbjct: 121 SLKSYRDLPVNLYQIQWKFRDELRPRNGILRSREFLMMDAYSFDTDFEKAMKTYDAVFRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y + F R+ L++I ++A+ G IGG +SHEF VL  TGE+ V+  +  ++           
Sbjct: 181 YRKAFKRMNLQTIALKADMGAIGGSVSHEFHVLTPTGESTVYYDERALELSE-------- 232

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                +  +E+    YAAT D+H+EK     PE+   +ARGIEVGHIFY   +YS  M+ 
Sbjct: 233 ---MNDYGIEELKEVYAATDDMHDEKSCGIAPED-LKTARGIEVGHIFYLDDRYSRTMNV 288

Query: 301 TFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            F   DG    +V+MG YGIG  R++ A+IE  HD  GI WP SVAPFK+ ++N+ + ++
Sbjct: 289 KFCNTDGHSGTHVKMGCYGIGISRLIGALIEVFHDDAGIKWPLSVAPFKVGIVNLFSKNE 348

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            C+   E+I++ L     D  +DD  +  G + +  DL+G P QVIVG+ F+ D  +E+K
Sbjct: 349 ECKRVSERIHSVLPN---DSLYDDRDDTPGVKLSRMDLIGLPWQVIVGNSFIKDGVLELK 405

Query: 420 HRLTGIREDMSLEEVINYAS 439
           +R TG  E +S+++V++  S
Sbjct: 406 NRATGDIELLSVDDVVSRIS 425


>gi|88657672|ref|YP_507541.1| prolyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
 gi|114152195|sp|Q2GG92|SYP_EHRCR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|88599129|gb|ABD44598.1| prolyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
          Length = 424

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 201/440 (45%), Positives = 283/440 (64%), Gaps = 16/440 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y++P L+E   D  + SHK  +R G+I Q + GIY+WLPLG K L N+  I+REE
Sbjct: 1   MRLSDYYVPTLKETSADISVISHKYSIRAGLIKQIASGIYTWLPLGLKVLKNIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++G++E+ +P +Q A LW ESGRYD YG EMLR+ DRN + M++GPTHEEV+TDI R+
Sbjct: 61  MNKSGSLEILMPLIQPASLWKESGRYDDYGSEMLRITDRNQREMLFGPTHEEVITDILRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              S+++LP   YQIQ KFRDELRPR+G+MR REFLMKDAYSFD    G+  SYN MF +
Sbjct: 121 TPVSHKDLPLILYQIQWKFRDELRPRYGIMRCREFLMKDAYSFDKDFSGAISSYNLMFKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF +LGL  I ++A+SGPIGG+LSHEF VLA++GE+ ++  +D ++           
Sbjct: 181 YIKIFQKLGLTPIAVKADSGPIGGNLSHEFHVLANSGESTLYYDQDIIEL---------- 230

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            + S +  VE+    Y A  D+H+ +    +  +K   ++GIE+GHIF+ G KYS PM+A
Sbjct: 231 -MNSESIDVEKIKNTYTAADDMHDPQAC-PISSDKVKISKGIEIGHIFHLGDKYSKPMNA 288

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F      +  +QMG YGIG  R+VAA+IE  HD KGIIWP++VAPFK SL+N+   +  
Sbjct: 289 NFCD-SNNNKLLQMGCYGIGVSRLVAAIIEVFHDNKGIIWPETVAPFKFSLVNLYTSNDK 347

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C+   E ++ +L             +  G + A  DLLG P QVI+G   V    +E+++
Sbjct: 348 CKKVAENLHMQLYDDVLYDDT---DDSPGIKLARTDLLGMPWQVIIGKSTVEQDLIEVRN 404

Query: 421 RLTGIREDMSLEEVINYASH 440
           RLT  +  +S E+ +N    
Sbjct: 405 RLTKDKVLISTEQFLNKLKK 424


>gi|254458440|ref|ZP_05071865.1| prolyl-tRNA synthetase [Campylobacterales bacterium GD 1]
 gi|207084748|gb|EDZ62035.1| prolyl-tRNA synthetase [Campylobacterales bacterium GD 1]
          Length = 434

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 157/442 (35%), Positives = 241/442 (54%), Gaps = 8/442 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MRRS+ F+P  +E P DA + SH+ ++R G I+Q   G+Y++LPLG+  L+ +  I++EE
Sbjct: 1   MRRSRAFIPTTKEVPNDATLPSHQFLVRGGFINQQGAGLYNFLPLGKIVLEKIRTIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +  +    LW  SGR D+ GKEMLR+ DR+    +  PT+EE M ++ ++
Sbjct: 61  LDMAGCNEVQLSFVTPIGLWDRSGRADAMGKEMLRIQDRHQNDFVLSPTNEEAMVELVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP   YQI  KFRDE RPR+G++R REFLMKD YSF  + E     ++ M  +
Sbjct: 121 RVTSYKDLPLNLYQINTKFRDEARPRYGLLRGREFLMKDGYSFHASTEDMIREFDLMEET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RLGL    ++A+SG IGG+ S EF VLAD+GE  +   +   D+    E    +
Sbjct: 181 YKKIFTRLGLDFRVVQADSGAIGGEGSKEFHVLADSGEDTIIVCESC-DYGANIETIFDN 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +       V+                   S         +GIEVGHIF  GTKYS  + A
Sbjct: 240 E-----EEVDALNEKTYEELQTKEISEKCSCG-GNLSFKKGIEVGHIFQLGTKYSSALEA 293

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   +GK    +M ++GIG  R+VA+VIE +HD  G IW    AP+ I+++     D+ 
Sbjct: 294 NFSDENGKPRPFEMATFGIGVSRLVASVIEQNHDENGCIWTKETAPYTINIMVSNIKDET 353

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                E++Y +L     +  +DD  E+ G +   A+L+GFP  VI+G K + +  V++  
Sbjct: 354 QMTLGEELYLKLLGENVEAMFDDRKERFGFKMKDAELIGFPYTVIIG-KELDNGLVQVYD 412

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R T  +  +   ++  +     
Sbjct: 413 RKTQEKISVKTGDIYKHIMELI 434


>gi|124515073|gb|EAY56584.1| Prolyl-tRNA synthetase [Leptospirillum rubarum]
          Length = 422

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 182/443 (41%), Positives = 256/443 (57%), Gaps = 27/443 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L E P +AE+ SH+LMLR G + + + G+YS+LP+  +AL  V +IIREE
Sbjct: 1   MKASCDPVQTLHEEPAEAEVVSHRLMLRAGFVRKLAGGVYSYLPMAVRALRKVESIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +P LQ +DLW ++GR+ +YG E+ RL DR+++A   GPTHEEV+TD+   
Sbjct: 61  MNSAGGQEVLLPALQPSDLWEKTGRWQAYGPELFRLHDRHERAFALGPTHEEVITDLVSQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LPF  YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E ++  Y +M  +
Sbjct: 121 IIRSYRQLPFLAYQIQTKFRDERRPRFGILRGREFIMKDAYSFSASEENARQIYARMQEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    + A+SG IGG+LSHEF+V+AD+GE  V   +               
Sbjct: 181 YGRIFLRLGLDHRMVEADSGLIGGNLSHEFMVMADSGEDTVVTCEKCSW----------- 229

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A+  +   +     +  +   S   IEVGH+FY G KYS PM  
Sbjct: 230 ----------------ASNIEKAPDARVCPVCGSALTSRTAIEVGHVFYLGHKYSAPMET 273

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           TF  + GK+    MG YGIG  R++AA IE SHD KGIIWP ++AP++ +++ +      
Sbjct: 274 TFLDSAGKEVPFFMGCYGIGVSRILAATIEQSHDDKGIIWPVAMAPYRTAVLPLGPGMSE 333

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            R+    + +  S    + ++DD   + G +F  ADL GFP QVI+G + V     E+K 
Sbjct: 334 RREVLSLLESLESLWPGEAYFDDREIRPGMKFQDADLRGFPFQVILGDRHVDKGNGEVKI 393

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG R  + L ++    S R  
Sbjct: 394 RRTGERLVLPLRDIPALLSARVQ 416


>gi|284048337|ref|YP_003398676.1| threonyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
 gi|283952558|gb|ADB47361.1| threonyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
          Length = 636

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/445 (19%), Positives = 156/445 (35%), Gaps = 42/445 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +++E   RD      +L L   M+  +  G   +LP G    + +    RE   +
Sbjct: 231 EAYLHMMEEAEKRDHRKLGKQLGLF--MLSDYGPGFPFFLPNGMIIRNTLIDYWREVHRK 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + +  LW  SG +D Y + M      +       P +      ++ +   
Sbjct: 289 YGYQEVMTPMIMNRQLWETSGHWDHYKENM-YFTQIDGDDYAIKPMNCPGGMLVYANEPH 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY+ LP    ++ L  R EL     G+ R R F   DA+ F + P   +    +    + 
Sbjct: 348 SYKELPLRVGELGLVHRHELSGALHGLFRVRCFTQDDAHIF-MMPNQIEDVIQETIRLFD 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   GL                         T            +    +     DD 
Sbjct: 407 EVYATFGLTY------------------HAELSTRPDNSMGDDATWEMTTNALRKAMDDF 448

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               SI E   A Y    D H   L DS+    +     +++     F        + T+
Sbjct: 449 GLKYSINEGDGAFYGPKIDFH---LKDSIGRTWQCGTIQLDMLLPEKF--------NLTY 497

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H    +     G++     ++    +     +P  +AP ++ ++ I       
Sbjct: 498 TGEDGQKHRPVMIHRVVYGSIERFIGILI---ENYAGAFPAWLAPEQVRVMPITDK---Y 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  ++I  +L         DD  E++G +   A +   P  +IVG K V    V ++ R
Sbjct: 552 NEYAKQIVDKLEAQKIRAHLDDRNEKVGYKIREAQVKKVPYMLIVGEKEVESGTVSVRSR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
             G +  M ++E I        N +
Sbjct: 612 DNGEQGAMPVDEFIAKLQDEIKNRK 636


>gi|206603805|gb|EDZ40285.1| Prolyl-tRNA synthetase [Leptospirillum sp. Group II '5-way CG']
          Length = 422

 Score =  297 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 183/443 (41%), Positives = 259/443 (58%), Gaps = 27/443 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L E P +AE+ SH+LMLR G++ + + G+YS+LP+  +AL  V AIIREE
Sbjct: 1   MKASCDPVQTLHEEPAEAEVVSHRLMLRAGLVRKLAGGVYSYLPMAVRALRKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +P LQ +DLW ++GR+ +YG E+ RL DR+++A   GPTHEEV+TD+   
Sbjct: 61  MNSAGGQEVLLPALQPSDLWEKTGRWQAYGPELFRLHDRHERAFALGPTHEEVITDLVSQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LPF  YQIQ KFRDE RPRFG++R REF+MKDAYSF ++ E ++  Y +M  +
Sbjct: 121 VIRSYRQLPFIAYQIQTKFRDERRPRFGILRGREFIMKDAYSFSVSEENARQIYTRMQEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    + A+SG IGG+LSHEF+V+AD+GE  V   +               
Sbjct: 181 YGRIFLRLGLDHRMVEADSGLIGGNLSHEFMVMADSGEDTVVTCEKCSW----------- 229

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                           A+  +   +     +  +   S   IEVGH+FY G KYS PM  
Sbjct: 230 ----------------ASNIEKAPDARVCPVCGSVLESRTAIEVGHVFYLGHKYSTPMET 273

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           TF  + GK+    MG YGIG  R++AA IE SHD KGIIWP ++AP++ +++ +      
Sbjct: 274 TFLDSAGKEVPFFMGCYGIGVSRILAATIEQSHDDKGIIWPVAMAPYRTAVLPLGPGMSE 333

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            R+    + +  S    + ++DD   + G +F  ADL GFP QVI+G + V     E+K 
Sbjct: 334 RREVLSLLESLESLWPGESYFDDREIRPGMKFQDADLRGFPFQVILGDRHVDKGDGEVKI 393

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG R  + L+++    S R  
Sbjct: 394 RRTGERLVLPLKDIPALLSARVQ 416


>gi|196019376|ref|XP_002118967.1| hypothetical protein TRIADDRAFT_9363 [Trichoplax adhaerens]
 gi|190577501|gb|EDV18547.1| hypothetical protein TRIADDRAFT_9363 [Trichoplax adhaerens]
          Length = 408

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 174/423 (41%), Positives = 269/423 (63%), Gaps = 19/423 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y LP  ++   +A++ SHKLML++GMI Q S G+YSWLPLG   L+ +  +IR E
Sbjct: 1   MRLSNYLLPTTKDISSEAKLMSHKLMLKSGMIKQSSSGVYSWLPLGLNVLNKLANLIRVE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRY---DSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
            N+    E+ +P+LQ   +W +SGR         ++  + D+   A +  P+ EE + ++
Sbjct: 61  LNKINCHEIVLPSLQLLSIWEKSGRAVEDSDMKSQIFHIKDQKQTAYVLPPSGEEAVAEL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F+S + SY+++    YQI  KFRDE+RPR GVMR++EFLMKDAYSFD+  E +  SY K+
Sbjct: 121 FKSSVHSYKDVSKILYQITWKFRDEIRPRHGVMRAKEFLMKDAYSFDVNKEKALISYEKI 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT-GETQVFCSKDFMDFPIPSEN 236
           F +YL +F ++GL+ IP+ A +G +GG+ SHEF VL+D  GE+ ++  ++  ++      
Sbjct: 181 FKAYLEVFKKIGLRVIPVLAPTGAMGGNYSHEFHVLSDKNGESTIYYQEELNNY------ 234

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                +      ++ +   YA   + H   + D     K + ++ IEVGH+FY GTKYS 
Sbjct: 235 -----LKDDEFSLKGYEKFYAKEEEKH---VVDDCKTLKIIKSKSIEVGHLFYLGTKYSK 286

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            ++ T++ ++G+  + +MG YGIG  R++AA+IES HD KGIIWPD+++PFK+++INIKA
Sbjct: 287 SLNCTYQDSNGELQFPEMGCYGIGVTRLIAAIIESCHDDKGIIWPDAISPFKLAIINIKA 346

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D VCR+  +K+YA LS    DV +DD  +  G +FA  DL+G  L++I+G K  ++ KV
Sbjct: 347 EDSVCREFSDKLYANLSGK-YDVLYDDTNKSPGKKFADMDLIGINLEIIIGPKHAANKKV 405

Query: 417 EIK 419
           E+K
Sbjct: 406 ELK 408


>gi|296133381|ref|YP_003640628.1| threonyl-tRNA synthetase [Thermincola sp. JR]
 gi|296031959|gb|ADG82727.1| threonyl-tRNA synthetase [Thermincola potens JR]
          Length = 637

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 152/443 (34%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L +  I +   G   + P G    + +    RE+  + 
Sbjct: 232 EYLFRLEEAKKRDHRKLGAELDLFS--IQEEGPGFPFFHPKGMIVRNELEKFWREQHEKA 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +  LW +SG +D Y + M      +D      P +      ++++ + S
Sbjct: 290 GYQEIRTPIILNRSLWEQSGHWDHYRENM-YFTKIDDIDFAVKPMNCPGSILVYKTRLHS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+ P    ++ L  R E+     G+MR R F   DA+ F L P   K    K+      
Sbjct: 349 YRDFPIRLAELGLVHRHEMSGVLHGLMRVRCFTQDDAHIFML-PSQIKDEIIKVIDLIDN 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            +   G K                    V   T   +   S +  D    +         
Sbjct: 408 FYKVFGFKY------------------HVELSTKPEKAMGSDEIWDLATNALKEALAAKG 449

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D H   L D L    +     ++      F          T+ 
Sbjct: 450 MDFKINEGDGAFYGPKIDFH---LMDCLGRTWQCGTIQLDFLMPEKFD--------LTYV 498

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG+ H    +     G++     ++     G   +W   V    +++          +
Sbjct: 499 GEDGQKHRPVMIHRVVFGSIERFIGILIEHFAGALPVWLSPVQAKIMTVT------DRSK 552

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              EK+   L + G  V  D   E+IG +   A +   P  ++VG K + +  V ++ R 
Sbjct: 553 QYAEKVADWLKEKGVRVEVDARNEKIGYKIREAQVEKVPYMLVVGDKEMENGTVAVRKRG 612

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G +  ++ ++ +   +      
Sbjct: 613 EGDKGAVNADDFVALITKEIKEK 635


>gi|20808138|ref|NP_623309.1| threonyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
 gi|22654110|sp|Q8R9A4|SYT_THETN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|20516726|gb|AAM24913.1| Threonyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
          Length = 644

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/443 (20%), Positives = 161/443 (36%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L +  IH    G   + P G    + +    R+E  + 
Sbjct: 239 EYLHMMEEAKKRDHRKLGKELDLFS--IHPEGPGFPFFHPKGMIIRNILEDFWRKEHIKR 296

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + + +LW  SG +D Y + M    + + +     P +      +++S ++S
Sbjct: 297 GYQEIRTPIILNEELWKRSGHWDHYKENM-YFTEIDGQTYAIKPMNCPGAMLVYKSTLRS 355

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ L  R EL     G+MR R F   DA+   +TPE  +     +      
Sbjct: 356 YRDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAH-LFMTPEQVEDEILGVINLVDY 414

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            +   G                   E+ V   T       + +  +    +  +      
Sbjct: 415 FYKIFG------------------FEYHVELSTRPENSMGTDEEWELATNALISALKRAN 456

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   L DS+        R  + G I     +        + 
Sbjct: 457 LPYKVNEGEGAFYGPKIDFH---LKDSIG-------RTWQCGTI-QLDFQMPERFELEYI 505

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG+ H    +     G++     ++     G    W   +AP ++ ++ I    +   
Sbjct: 506 GPDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPI---SEKHH 559

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   K+Y RL +    V  DD  E+IG +   A L   P  +IVG + V +  V ++ R 
Sbjct: 560 EYARKVYERLQEHDIRVELDDRNEKIGYKIREAQLQKIPYMLIVGDREVEEGNVSLRSRK 619

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G    +SL+  I       +  
Sbjct: 620 DGDLGPISLDNFIEKILKEIATK 642


>gi|254796740|ref|YP_003081576.1| prolyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
 gi|254589987|gb|ACT69349.1| prolyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
          Length = 436

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 195/436 (44%), Positives = 276/436 (63%), Gaps = 11/436 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+Y+LP+++    + ++ SHK  LR G++ Q   G+YSWLPLG K L N+ +IIR+E 
Sbjct: 6   RVSEYYLPLMKNVSGEVKLRSHKYSLRAGLVKQCGAGLYSWLPLGLKVLKNIESIIRQEL 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM +P +Q A LW ESGRY  YG+E+L+  DR+D  +++GPT+EEV+T I R  
Sbjct: 66  DSMGMHEMLMPCIQLAKLWEESGRYSDYGRELLKFKDRHDNELLFGPTNEEVITAIVRDD 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY+ LP   Y IQ KFRDE+RPRFG+MR+REFLMKDAYSFD+  + ++ SYNK++ SY
Sbjct: 126 LASYKQLPKILYHIQWKFRDEIRPRFGLMRAREFLMKDAYSFDVDQQSARISYNKVYQSY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIV-LADTGETQVFCSKDFMDFPIPSENTDFD 240
           LRIF RLGL  IP RA +G IGG L+HEF +   + GE ++F  ++  +        D  
Sbjct: 186 LRIFKRLGLNPIPCRANAGVIGGSLNHEFHITTTEGGEGKIFYPEEIGELVDEFCKIDPS 245

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  +++ +  +       T + ++  + D   +N+  +A+GIEVGHIF FG KYS PM A
Sbjct: 246 DEHAVSVMTAKLQELSCFTEECNSSSIED---DNRICAAQGIEVGHIFLFGEKYSAPMQA 302

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F   DG      MGSYGIG  R++AA+IE   D KGIIWP+S+APFK+ LIN+    + 
Sbjct: 303 RFSDRDGMKKNFYMGSYGIGISRLLAAIIEVYSDDKGIIWPESIAPFKVGLINL---HEE 359

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                E+I+++L      V +DD  +  G +FA  DL+G P Q+IVG   + D  VE+K 
Sbjct: 360 SCGLAEEIFSKLDS----VIYDDTTDSQGVKFARMDLIGVPFQIIVGKNAIIDGTVELKC 415

Query: 421 RLTGIREDMSLEEVIN 436
           RL   RE  +  E+I+
Sbjct: 416 RLDSKRESCNFNELIS 431


>gi|218661849|ref|ZP_03517779.1| prolyl-tRNA synthetase [Rhizobium etli IE4771]
          Length = 354

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 232/354 (65%), Positives = 293/354 (82%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR D+ M+YGPT+EE++TDIFRS +KS
Sbjct: 1   GAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQDRPMLYGPTNEEMVTDIFRSSVKS 60

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           Y++LP   Y IQLKFRDE+RPRFG MRSREF+MKDAYSFDLT EG++HSYNKMF +YLR 
Sbjct: 61  YKDLPLNLYHIQLKFRDEIRPRFGTMRSREFMMKDAYSFDLTREGAEHSYNKMFAAYLRT 120

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F RLGL++IPMRA++GPIGG+LSHEFI+LADTGE++VFC KDF+ F IP E TDFD +  
Sbjct: 121 FERLGLRAIPMRADTGPIGGNLSHEFIILADTGESEVFCHKDFVGFDIPDERTDFDSVEG 180

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           L +I E+WT+ YAATS++H+E  F+++PE+ R+SARGIEVGHIFYFGTKYS  M A  +G
Sbjct: 181 LQAIFEKWTSLYAATSEMHDEAAFNAVPESDRLSARGIEVGHIFYFGTKYSETMGAKVQG 240

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAPF I +IN+KA DQ C D 
Sbjct: 241 PDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAPFDIVVINMKAGDQACDDT 300

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           CE IYA L+K G DV +DD  ++ G++FA ADL+G P+Q+I G + V++ +VE+
Sbjct: 301 CELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIAGPRAVANGEVEV 354


>gi|322807448|emb|CBZ05022.1| threonyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 635

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 92/442 (20%), Positives = 159/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH+   G   + P G    + +    REE  + G
Sbjct: 231 YLNMLEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIIRNILENFWREEHTKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW +SG +D Y + M    + +D      P +      ++++ + SY
Sbjct: 289 YQEIRTPLILNEELWHQSGHWDHYKENM-YFTNIDDSDYAIKPMNCPGGILVYKNSMHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ +  R EL     G+MR R F   DA+ +    +  +       +  +  
Sbjct: 348 RDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLYMTKEQIKEEIV--GIIKLIDK 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F++L      +   + P     S E                   +          D I  
Sbjct: 406 FYKLFGFEYFVELSTRPEDSMGSDE-----------------DWEIATNGLREALDSIGK 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H           K    R  + G I     +       ++ G
Sbjct: 449 EYRVNEGDGAFYGPKIDFHL----------KDCIGRTWQCGTI-QLDFQMPERFDLSYIG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++   + G    W   V    +++           D
Sbjct: 498 ADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNIT------DSQYD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV ++ R  
Sbjct: 552 YLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKD 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +SLEE I    +   N 
Sbjct: 612 GDLGAISLEEFIEKIKNEIKNK 633


>gi|326391979|ref|ZP_08213481.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325991980|gb|EGD50470.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 634

 Score =  285 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 93/442 (21%), Positives = 160/442 (36%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLHMLEEAKKRDHRKLGKELDLFS--IHPEGPGFPFFHPKGMIIRNILEDFWRKEHIKHG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M    + + +     P +      +++S + SY
Sbjct: 288 YQEIKTPIILNEELWRRSGHWDHYKENM-YFTEIDGETYAIKPMNCPGAMLVYKSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+   +TPE  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAH-LFMTPEQVEDEILGVINLVDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E                   +    +  +  + +  
Sbjct: 406 YKIFGFEY-FVELSTRPENSMGSDE-----------------DWELATNALISALNRVNL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+        R  + G I     +        + G
Sbjct: 448 PYKVNEGDGAFYGPKIDFH---LKDSIG-------RTWQCGTI-QLDFQMPERFELEYIG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++     G    W   +AP ++ ++ I         
Sbjct: 497 PDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPISDKH---YA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y RL +       DD  E+IG +   A L   P  +IVG K V    V ++ R  
Sbjct: 551 YAQNVYGRLLENDIRAELDDRNEKIGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRKE 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +SL E I       +  
Sbjct: 611 GDLGAISLNEFIEKILKEIATK 632


>gi|168183457|ref|ZP_02618121.1| threonine--tRNA ligase [Clostridium botulinum Bf]
 gi|237796594|ref|YP_002864146.1| threonyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657]
 gi|259516348|sp|C3KTK0|SYT_CLOB6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|182673322|gb|EDT85283.1| threonine--tRNA ligase [Clostridium botulinum Bf]
 gi|229263282|gb|ACQ54315.1| threonine--tRNA ligase [Clostridium botulinum Ba4 str. 657]
          Length = 635

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 157/440 (35%), Gaps = 42/440 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH+   G   + P G    + +    REE  + G
Sbjct: 231 YLNMLEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIIRNILENFWREEHTKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG +D Y + M    + +D      P +      ++++ + SY
Sbjct: 289 YQEIRTPLILNEALWHQSGHWDHYKENM-YFTNIDDGDYAIKPMNCPGGILVYKNSMHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ +  R EL     G+MR R F   DA+ +    +  +       +  +  
Sbjct: 348 RDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLYMTKEQIKEEIV--GIIKLIDK 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F++L      +   + P     S E                   +          D I  
Sbjct: 406 FYKLFGFEYFVELSTRPEDSMGSDE-----------------DWEIATNGLREALDSIGK 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H           K    R  + G I     +       ++ G
Sbjct: 449 EYRVNEGDGAFYGPKIDFHL----------KDCIGRTWQCGTI-QLDFQMPERFDLSYIG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++   + G    W   V    +++           D
Sbjct: 498 ADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNIT------DAQYD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV ++ R  
Sbjct: 552 YLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKD 611

Query: 424 GIREDMSLEEVINYASHRFS 443
           G    +SLEE I    +   
Sbjct: 612 GDLGAISLEEFIEKIKNEIK 631


>gi|323702723|ref|ZP_08114384.1| threonyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323532386|gb|EGB22264.1| threonyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 636

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 152/441 (34%), Gaps = 41/441 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              I +   RD      +L L +  I     G   + P G    + +    R E  + G 
Sbjct: 232 LFRIEEAKRRDHRKLGQELDLFS--IQDEGPGFPFFHPKGMVLRNELENFWRREHKKRGY 289

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +  Y + M      +D      P +      ++++ + SYR
Sbjct: 290 QEIRTPIILNRSLWEQSGHWAHYKENM-YFTKIDDADYAVKPMNCPGSILVYKTRMHSYR 348

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ L  R EL     G+MR R F   DA+ F L P   K     +   +   +
Sbjct: 349 DLPLRLAELGLVHRHELSGALHGLMRVRCFTQDDAHIFML-PSQIKDEIIGVIDLFEYFY 407

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL    +   + P     S E                   +    S     +     
Sbjct: 408 KTFGLSYH-VELSTRPEKSMGSDE-----------------IWELATRSLQDALEAKNMP 449

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             + E   A Y    D H   L DSL    +     ++    F    K+      T+ G 
Sbjct: 450 YKVNEGDGAFYGPKIDFH---LTDSLGRTWQCGTIQLD----FQMPEKFD----LTYVGE 498

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H    +     G++     ++    +     +P  +AP ++ ++ I        D 
Sbjct: 499 DGQKHRPVMIHRVVFGSIERFIGILT---EHFAGAFPVWLAPVQVKVLPITDKHH---DY 552

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L  +   V  D   E+I  +   A     P  +++G + + +  V ++ R  G
Sbjct: 553 ARELVQKLDAMDIRVELDARNEKINYKIREAQTQKIPYMLVIGDREMENGTVAVRQRGKG 612

Query: 425 IREDMSLEEVINYASHRFSNN 445
               + ++E I        N 
Sbjct: 613 DIGAVKMDEFIAKIEDEIKNK 633


>gi|168179213|ref|ZP_02613877.1| threonyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|182670074|gb|EDT82050.1| threonyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
          Length = 635

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/443 (20%), Positives = 157/443 (35%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L +  IH+   G   + P G    + + +  REE  + 
Sbjct: 230 EYLNMIEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIVRNILESFWREEHTKA 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +  LW +SG +D Y + M    + +D      P +      ++++ + S
Sbjct: 288 GYQEIRTPLILNEALWHQSGHWDHYKENM-YFTNIDDDDYAIKPMNCPGGILVYKNSMHS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ +  R EL     G+MR R F   DA+ +    +  +       +  + 
Sbjct: 347 YRDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLYMTKEQIKEEVV--GIIKLID 404

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            F++L      +   + P     S E                   +          D I 
Sbjct: 405 KFYKLFGFEYFVELSTRPEDSMGSDE-----------------DWEIATNGLREALDSIG 447

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H           K    R  + G I     +       ++ 
Sbjct: 448 KEYRVNEGDGAFYGPKIDFHL----------KDCIGRTWQCGTI-QLDFQMPERFDLSYI 496

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG+ H    +     G++     ++   + G    W   V    +++           
Sbjct: 497 GADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNIT------DSQY 550

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV ++ R 
Sbjct: 551 DYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRK 610

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G    +SLEE I    +   N 
Sbjct: 611 DGDLGAISLEEFIEKIKNEIKNK 633


>gi|28211884|ref|NP_782828.1| threonyl-tRNA synthetase [Clostridium tetani E88]
 gi|73919782|sp|Q891T0|SYT_CLOTE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28204327|gb|AAO36765.1| threonyl-tRNA synthetase [Clostridium tetani E88]
          Length = 639

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/444 (20%), Positives = 159/444 (35%), Gaps = 42/444 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E  R D      +L L T  I++   G   + P G    + +    RE+  +
Sbjct: 229 EAYLKMLEEAKRRDHRKLGKELDLFT--INEEGPGFPFFHPKGMVVRNILENFWREKHTK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + + +LW  SG +D Y + M      +++     P +      +++SH+ 
Sbjct: 287 AGYDEIRTPVILNEELWHRSGHWDHYKENM-YFTKIDNENFAIKPMNCPGSILVYKSHLH 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY+  P    ++ L  R EL     G+MR R F   DA+ F    +        +     
Sbjct: 346 SYKEFPMRLGELGLVHRHELSGALHGLMRVRCFTQDDAHIFMTKEQIKDE-ILNVIKLID 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +   G +   +   + P     S E                   +          +  
Sbjct: 405 SFYKVFGFEY-FVELSTRPEDSMGSDE-----------------DWEVATNGLKNALEGA 446

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A Y    D H           K    R  + G I     +       T+
Sbjct: 447 GLEYKINEGDGAFYGPKIDFHL----------KDCIGRTWQCGTI-QLDFQMPERFDLTY 495

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H    +     G++     ++     G    W   V    +++          
Sbjct: 496 VGQDGEKHRPVMVHRVVFGSIERFIGILIEHFAGAFPTWLAPVQVKVMTIT------DSQ 549

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +D   K+   L + G  V +DD  E+IG +   A L   P  +I+G K VS++KV ++ R
Sbjct: 550 KDYANKVVNDLKEKGIRVEFDDRNEKIGYKIREAQLQKVPYMIILGDKEVSENKVAVRSR 609

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    +SL+E +   ++   N 
Sbjct: 610 KEGDLGAISLKEFVAKLNYEIDNR 633


>gi|148381087|ref|YP_001255628.1| threonyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153932923|ref|YP_001385460.1| threonyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153935084|ref|YP_001388867.1| threonyl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|166223333|sp|A7FY87|SYT_CLOB1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223334|sp|A5I6L8|SYT_CLOBH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148290571|emb|CAL84700.1| threonyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|152928967|gb|ABS34467.1| threonyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152930998|gb|ABS36497.1| threonine--tRNA ligase [Clostridium botulinum A str. Hall]
          Length = 635

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/443 (20%), Positives = 157/443 (35%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L +  IH+   G   + P G    + + +  REE  + 
Sbjct: 230 EYLNMIEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIVRNILESFWREEHTKA 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +  LW +SG +D Y + M    + +D      P +      ++++ + S
Sbjct: 288 GYQEIRTPLILNEALWHQSGHWDHYKENM-YFTNIDDDDYAIKPMNCPGGILVYKNSMHS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ +  R EL     G+MR R F   DA+ +    +  +       +  + 
Sbjct: 347 YRDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLYMTKEQIKEEVV--GIIKLID 404

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            F++L      +   + P     S E                   +          D I 
Sbjct: 405 KFYKLFGFEYFVELSTRPEDSMGSDE-----------------DWEIATNGLREALDSIG 447

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H           K    R  + G I     +       ++ 
Sbjct: 448 KEYRVNEGDGAFYGPKIDFHL----------KDCIGRTWQCGTI-QLDFQMPERFDLSYI 496

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG+ H    +     G++     ++   + G    W   V    +++           
Sbjct: 497 GADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNIT------DSQY 550

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV ++ R 
Sbjct: 551 DYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRK 610

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G    +SLEE I    +   N 
Sbjct: 611 DGDLGAISLEEFIEKIKNEIKNK 633


>gi|170754255|ref|YP_001782772.1| threonyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
 gi|229557978|sp|B1IMV3|SYT_CLOBK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169119467|gb|ACA43303.1| threonyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
          Length = 635

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/442 (20%), Positives = 158/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH+   G   + P G    + + +  REE  + G
Sbjct: 231 YLNMLEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIVRNILESFWREEHTKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG +D Y + M    + +D      P +      ++++ + SY
Sbjct: 289 YQEIRTPLILNEALWHQSGHWDHYKENM-YFTNIDDGDYAIKPMNCPGGILVYKNSMHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ +  R EL     G+MR R F   DA+ +    +  +       +  +  
Sbjct: 348 RDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLYMTKEQIKEEVV--GIIKLIDK 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F++L      +   + P     S E                   +          D I  
Sbjct: 406 FYKLFGFEYFVELSTRPEDSMGSDE-----------------DWEIATNGLKEALDSIGK 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H           K    R  + G I     +       ++ G
Sbjct: 449 EYRVNEGDGAFYGPKIDFHL----------KDCIGRTWQCGTI-QLDFQMPERFDLSYIG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++   + G    W   V    +++           D
Sbjct: 498 ADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNIT------DAQYD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV ++ R  
Sbjct: 552 YLKKVEETLKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKD 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +SLEE I    +     
Sbjct: 612 GDLGAISLEEFIEKIKNEIKAK 633


>gi|226950568|ref|YP_002805659.1| threonine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
 gi|254783516|sp|C1FKN0|SYT_CLOBJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226841746|gb|ACO84412.1| threonine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
          Length = 635

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/443 (20%), Positives = 157/443 (35%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L +  IH+   G   + P G    + + +  REE  + 
Sbjct: 230 EYLNMIEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIVRNILESFWREEHTKA 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +  LW +SG +D Y + M    + +D      P +      ++++ + S
Sbjct: 288 GYQEIRTPLILNEALWHQSGHWDHYKENM-YFTNIDDGDYAIKPMNCPGGILVYKNSMHS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ +  R EL     G+MR R F   DA+ +    +  +       +  + 
Sbjct: 347 YRDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLYMTKEQIKEEIV--GIIKLID 404

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            F++L      +   + P     S E                   +          D I 
Sbjct: 405 KFYKLFGFEYFVELSTRPEDSMGSDE-----------------DWEIATNGLREALDSIG 447

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H           K    R  + G I     +       ++ 
Sbjct: 448 KEYRVNEGDGAFYGPKIDFHL----------KDCIGRTWQCGTI-QLDFQMPERFDLSYI 496

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG+ H    +     G++     ++   + G    W   V    +++           
Sbjct: 497 GADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNIT------DSQY 550

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV ++ R 
Sbjct: 551 DYLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRK 610

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G    +SLEE I    +   N 
Sbjct: 611 DGDLGAISLEEFIEKIKNEIKNK 633


>gi|88608761|ref|YP_506256.1| prolyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
 gi|114152220|sp|Q2GE40|SYP_NEOSM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|88600930|gb|ABD46398.1| prolyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
          Length = 436

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 197/439 (44%), Positives = 280/439 (63%), Gaps = 11/439 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+Y+LP+++    + ++ SHK  LR G++ Q   G+YSWLPLG K L N+ ++IR+E 
Sbjct: 6   RVSEYYLPLMKNVSGEVKLRSHKYSLRAGLVKQCGAGLYSWLPLGLKVLRNIESVIRQEL 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM +P +Q A LW ESGRY  YGKE+L+  DR+D  +++GPT+EEV+T I R  
Sbjct: 66  DSMGMHEMLMPCIQLAKLWEESGRYSDYGKELLKFKDRHDNELLFGPTNEEVITAIVRDD 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY+ LP   Y IQ KFRDE+RPRFG+MR+REFLMKDAYSFD+  + ++ SYNK++ SY
Sbjct: 126 LASYKQLPKILYHIQWKFRDEIRPRFGLMRAREFLMKDAYSFDVDQQSARISYNKVYQSY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIV-LADTGETQVFCSKDFMDFPIPSENTDFD 240
           LRIF RLGL  IP RA +G IGG L+HEF +   + GE ++F  ++  +        D  
Sbjct: 186 LRIFKRLGLNPIPCRANAGVIGGSLNHEFHITTTEGGEGKIFYPEEMGELVDEFCKIDPS 245

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +  +++ + E+    +  T + ++  + +   +N+  +A+GIEVGHIF FG KYS PM A
Sbjct: 246 NEHAVSVMTEKLQELFCFTEECNSSGIGN---DNRICTAQGIEVGHIFLFGEKYSAPMQA 302

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            F G DGK     MGSYGIG  R++AA+IE   D KGIIWP+S+APFKI LIN+      
Sbjct: 303 RFSGRDGKKKNFYMGSYGIGISRLLAAIIEVHSDDKGIIWPESIAPFKIGLINLHGESCG 362

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                E+I+++L      V +DD  +  G +FA  DL+G P Q+IVG        +E+K+
Sbjct: 363 ---FAEEIFSKLDS----VIYDDTADSQGVKFARMDLIGVPFQIIVGKNGPIHGTIELKY 415

Query: 421 RLTGIREDMSLEEVINYAS 439
           RL   RE  SL E+++  S
Sbjct: 416 RLDSKRESRSLNELVSLFS 434


>gi|307266242|ref|ZP_07547784.1| threonyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918772|gb|EFN49004.1| threonyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 634

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 93/442 (21%), Positives = 160/442 (36%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLHMLEEAKKRDHRKLGKELDLFS--IHPEGPGFPFFHPKGMIIRNILEDFWRKEHIKHG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M    + + +     P +      +++S + SY
Sbjct: 288 YQEIKTPIILNEELWRRSGHWDHYKENM-YFTEIDGETYAIKPMNCPGAMLVYKSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+   +TPE  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAH-LFMTPEQVEDEILGVINLVDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E                   +    +  +  + +  
Sbjct: 406 YKIFGFEY-FVELSTRPENSMGSDE-----------------DWELATNALISALNRVNL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+        R  + G I     +        + G
Sbjct: 448 PYKVNEGDGAFYGPKIDFH---LKDSIG-------RTWQCGTI-QLDFQMPERFELEYIG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++     G    W   +AP ++ ++ I         
Sbjct: 497 PDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPISDKH---YA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y RL +       DD  E+IG +   A L   P  +IVG K V    V ++ R  
Sbjct: 551 YAQHVYGRLLENDIRAELDDRNEKIGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRKE 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +SL E I       +  
Sbjct: 611 GDLGAISLNEFIEKILKEIATK 632


>gi|170759804|ref|YP_001788457.1| threonyl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|238688792|sp|B1L0T7|SYT_CLOBM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169406793|gb|ACA55204.1| threonine--tRNA ligase [Clostridium botulinum A3 str. Loch Maree]
          Length = 635

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 158/440 (35%), Gaps = 42/440 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH+   G   + P G    + + +  REE  + G
Sbjct: 231 YLNMLEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIIRNILESFWREEHTKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG +D Y + M    + +D      P +      ++++ + SY
Sbjct: 289 YQEIRTPLILNEALWHQSGHWDHYKENM-YFTNIDDGDYAIKPMNCPGGILVYKNSMHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ +  R EL     G+MR R F   DA+ +    +  +       +  +  
Sbjct: 348 RDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLYMTKEQIKEEIV--GIIKLIDK 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F++L      +   + P     S E                   +          D I  
Sbjct: 406 FYKLFGFEYFVELSTRPEDSMGSDE-----------------DWEIATNGLREALDSIGK 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H           K    R  + G I     +       ++ G
Sbjct: 449 EYRVNEGDGAFYGPKIDFHL----------KDCIGRTWQCGTI-QLDFQMPERFDLSYIG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++   + G    W   V    +++           D
Sbjct: 498 ADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNIT------DAQYD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV ++ R  
Sbjct: 552 YLKKVEEALKENNIRVEIDTRNEKIGYKIREAQLQKIPYMLILGDKEVEAGKVAVRSRKD 611

Query: 424 GIREDMSLEEVINYASHRFS 443
           G    +SLEE I    +   
Sbjct: 612 GDLGAISLEEFIEKIKNEIK 631


>gi|167040680|ref|YP_001663665.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|307724045|ref|YP_003903796.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|166854920|gb|ABY93329.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|307581106|gb|ADN54505.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X513]
          Length = 634

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 92/442 (20%), Positives = 160/442 (36%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLHMLEEAKKRDHRKLGKELDLFS--IHPEGPGFPFFHPKGMIIRNILEDFWRKEHIKHG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M    + + +     P +      +++S + SY
Sbjct: 288 YQEIKTPIILNEELWRRSGHWDHYKENM-YFTEIDGETYAIKPMNCPGAMLVYKSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+   +TPE  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAH-LFMTPEQVEDEILGVINLVDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E                   +    +  +  + +  
Sbjct: 406 YKIFGFEY-FVELSTRPENSMGSDE-----------------DWELATNALISALNRVNL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+        R  + G I     +        + G
Sbjct: 448 PYKVNEGDGAFYGPKIDFH---LKDSIG-------RTWQCGTI-QLDFQMPERFELEYIG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++     G    W   +AP ++ ++ I         
Sbjct: 497 PDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPISDKH---YA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y RL +       DD  E++G +   A L   P  +IVG K V    V ++ R  
Sbjct: 551 YAQNVYGRLLENDIRAELDDRNEKVGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRKE 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +SL E I       +  
Sbjct: 611 GDLGAISLSEFIEKILKEIATK 632


>gi|187776940|ref|ZP_02993413.1| hypothetical protein CLOSPO_00484 [Clostridium sporogenes ATCC
           15579]
 gi|187775599|gb|EDU39401.1| hypothetical protein CLOSPO_00484 [Clostridium sporogenes ATCC
           15579]
          Length = 635

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 91/442 (20%), Positives = 159/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH+   G   + P G    + + +  REE  + G
Sbjct: 231 YLNMLEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIVRNILESFWREEHTKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG +D Y + M    + +D      P +      ++++ + SY
Sbjct: 289 YQEIRTPLILNEALWHQSGHWDHYKENM-YFTNIDDGDYAIKPMNCPGGILVYKNSMHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ +  R EL     G+MR R F   DA+ +    +  +       +  +  
Sbjct: 348 RDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLYMTKEQIKEEVV--GIIKLIDK 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F++L      +   + P     S E                   +          D I  
Sbjct: 406 FYKLFGFEYFVELSTRPEDSMGSDE-----------------DWEIATNGLREALDSIGK 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H           K    R  + G I     +       ++ G
Sbjct: 449 EYRVNEGDGAFYGPKIDFHL----------KDCIGRTWQCGTI-QLDFQMPERFDLSYIG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++   + G    W   V    +++           D
Sbjct: 498 ADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNIT------DSQYD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV ++ R  
Sbjct: 552 YLKKVEETLKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRKD 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +SLEE I    +   + 
Sbjct: 612 GDLGAISLEEFIEKIKNEIKDK 633


>gi|297544949|ref|YP_003677251.1| threonyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842724|gb|ADH61240.1| threonyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 634

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 92/442 (20%), Positives = 160/442 (36%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLHMLEEAKKRDHRKLGKELDLFS--IHPEGPGFPFFHPKGMIIRNILEDFWRKEHMKHG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M    + + +     P +      +++S + SY
Sbjct: 288 YQEIKTPIILNEELWRRSGHWDHYKENM-YFTEIDGETYAIKPMNCPGAMLVYKSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+   +TPE  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAH-LFMTPEQVEDEILGVINLVDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E                   +    +  +  + +  
Sbjct: 406 YKIFGFEY-FVELSTRPENSMGSDE-----------------DWELATNALISALNRVNL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+        R  + G I     +        + G
Sbjct: 448 PYKVNEGDGAFYGPKIDFH---LKDSIG-------RTWQCGTI-QLDFQMPERFELEYIG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++     G    W   +AP ++ ++ I         
Sbjct: 497 PDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPISDKH---YA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y RL +       DD  E++G +   A L   P  +IVG K V    V ++ R  
Sbjct: 551 YAQNVYGRLLENDIRAELDDRNEKVGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRRE 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +SL E I       +  
Sbjct: 611 GDLGAISLSEFIEKILKEIATK 632


>gi|78044971|ref|YP_360408.1| threonyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
 gi|123770579|sp|Q3ABS6|SYT_CARHZ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77997086|gb|ABB15985.1| threonyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 634

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 150/446 (33%), Gaps = 41/446 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   + +   RD      +L L +  + +   G   + P G    + +    RE+  
Sbjct: 228 LTDYLNFLEEAKKRDHRKIGQELDLFS--LQEEGPGFPFFHPKGMVIRNELENFWREKHR 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P + + +LW  SG +  Y + M      +D+     P +      ++++ +
Sbjct: 286 LAGYQEIKTPIILNRELWERSGHWAHYKENM-YFTKIDDQDYAIKPMNCPGSILVYKNKL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR  P    ++ L  R EL     G+MR R F   DA+ F L  +          ++ 
Sbjct: 345 HSYREFPIRLAELGLVHRHELSGVLHGLMRVRCFTQDDAHIFMLPEQVKDEII--GVINL 402

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +  F+RL      +   + P     S E                   +    S     ++
Sbjct: 403 IDEFYRLFGFEYHVELSTRPENSMGSDE-----------------LWELATNSLKEALEE 445

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D H           K    R  + G I     +       T
Sbjct: 446 RGLPYKINEGDGAFYGPKIDFHL----------KDCLGRTWQCGTI-QLDFQMPEKFDLT 494

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H    +     G++     ++   + G   +W   V    I++       + 
Sbjct: 495 YIGEDGQKHRPVMIHRVVFGSIERFIGILIEHYAGAFPVWLSPVQVRVITVA------ER 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            R+  ++IY +L   G  V  DD  E IG +     +   P  +IVG K +    V ++ 
Sbjct: 549 HREYGQEIYQKLFNQGVRVELDDRNETIGYKIREGQMQKIPYLLIVGDKEIEQGSVAVRK 608

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R  G        E I          R
Sbjct: 609 RGVGDLGQKPFAEFIEELLAEIREKR 634


>gi|153938058|ref|YP_001392415.1| threonyl-tRNA synthetase [Clostridium botulinum F str. Langeland]
 gi|166223335|sp|A7GI05|SYT_CLOBL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|152933954|gb|ABS39452.1| threonine--tRNA ligase [Clostridium botulinum F str. Langeland]
 gi|295320405|gb|ADG00783.1| threonine--tRNA ligase [Clostridium botulinum F str. 230613]
          Length = 635

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 91/443 (20%), Positives = 157/443 (35%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L +  IH+   G   + P G    + + +  RE+  + 
Sbjct: 230 EYLNMIEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIVRNILESFWREKHTKA 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +  LW +SG +D Y + M    + +D      P +      +++S + S
Sbjct: 288 GYQEIRTPLILNEALWHQSGHWDHYKENM-YFTNIDDGDYAIKPMNCPGGILVYKSSMHS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ +  R EL     G+MR R F   DA+ +    +  +       +  + 
Sbjct: 347 YRDLPLRLSELGIVHRHELSGALHGLMRVRCFTQDDAHLYMTKEQIKEEVI--GIIKLID 404

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            F++L      +   + P     S E                   +          D I 
Sbjct: 405 EFYKLFGFEYFVELSTRPEDSMGSDE-----------------DWEIATNGLREALDSIG 447

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H           K    R  + G I     +       ++ 
Sbjct: 448 KEYRVNEGDGAFYGPKIDFHL----------KDCIGRTWQCGTI-QLDFQMPERFDLSYI 496

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG+ H    +     G++     ++   + G    W   V    +++           
Sbjct: 497 GADGEKHRPVMVHRTIYGSVERFIGILIEQYAGAFPTWLAPVQVKLMNIT------DSQY 550

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +K+   L +    V  D   E+IG +   A L   P  +I+G K V   KV ++ R 
Sbjct: 551 DYLKKVEETLKENNIRVEIDTRNEKIGYKIREAQLQKVPYMLILGDKEVEAGKVAVRSRK 610

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G    +SLEE I    +   N 
Sbjct: 611 DGDLGAISLEEFIEKIKNEIKNK 633


>gi|256751279|ref|ZP_05492159.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749834|gb|EEU62858.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 634

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 92/442 (20%), Positives = 160/442 (36%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLHMLEEAKKRDHRKLGKELDLFS--IHPEGPGFPFFHPKGMIIRNILEDFWRKEHMKHG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M    + + +     P +      +++S + SY
Sbjct: 288 YQEIKTPIILNEELWRRSGHWDHYKENM-YFTEIDGETYAIKPMNCPGAMLVYKSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+   +TPE  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAH-LFMTPEQVEDEILGVINLVDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E                   +    +  +  + +  
Sbjct: 406 YKIFGFEY-FVELSTRPENSMGSDE-----------------DWELATNALISALNRVNL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+        R  + G I     +        + G
Sbjct: 448 PYKVNEGDGAFYGPKIDFH---LKDSIG-------RTWQCGTI-QLDFQMPERFELEYIG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++     G    W   +AP ++ ++ I         
Sbjct: 497 PDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPISDKH---YA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y RL +       DD  E++G +   A L   P  +IVG K V    V ++ R  
Sbjct: 551 YAQNVYGRLLENDIRAELDDRNEKVGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRKE 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +SL E I       +  
Sbjct: 611 GDLGAISLNEFIEKILKEIATK 632


>gi|167037181|ref|YP_001664759.1| threonyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115599|ref|YP_004185758.1| threonyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856015|gb|ABY94423.1| threonyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319928690|gb|ADV79375.1| threonyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 634

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 92/442 (20%), Positives = 160/442 (36%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLHMLEEAKKRDHRKLGKELDLFS--IHPEGPGFPFFHPKGMIIRNILEDFWRKEHMKHG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M    + + +     P +      +++S + SY
Sbjct: 288 YQEIKTPIILNEELWRRSGHWDHYKENM-YFTEIDGETYAIKPMNCPGAMLVYKSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+   +TPE  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAH-LFMTPEQVEDEILGVINLVDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E                   +    +  +  + +  
Sbjct: 406 YKIFGFEY-FVELSTRPENSMGSDE-----------------DWELATNALISALNRVNL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+        R  + G I     +        + G
Sbjct: 448 PYKVNEGDGAFYGPKIDFH---LKDSIG-------RTWQCGTI-QLDFQMPERFELEYIG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++     G    W   +AP ++ ++ I         
Sbjct: 497 PDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPISDKH---YA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y RL +       DD  E++G +   A L   P  +IVG K V    V ++ R  
Sbjct: 551 YAQNVYGRLLENDIRAELDDRNEKVGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRKE 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +SL E I       +  
Sbjct: 611 GDLGAISLSEFIEKILKEIATK 632


>gi|227498537|ref|ZP_03928681.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903993|gb|EEH89911.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 636

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 157/445 (35%), Gaps = 42/445 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L   M+  +  G   +LP G    + +    RE   +
Sbjct: 231 EAYLHMLEEAEKRDHRKLGKQLGLF--MLSDYGPGFPFFLPNGMILRNELINYWREVHRK 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+S P + +  LW  SG +D Y + M      + +     P +      ++ S   
Sbjct: 289 YNYYEVSTPMIMNRQLWETSGHWDHYKENM-YFTKIDGEDYAIKPMNCPGGMLVYDSEPH 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++ L  R EL     G+ R R F   DA+ F + P   +    +    + 
Sbjct: 348 SYRDLPLRVGELGLVHRHELSGALHGLFRVRCFTQDDAHIF-MMPNQIEDVIQETIRLFD 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   GL                         T            +    +     DD 
Sbjct: 407 EVYATFGLTY------------------HAELSTRPDNSMGDDATWEMTTNALRKAMDDF 448

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                + E   A Y    D H   L DS+    +     +++     F        + T+
Sbjct: 449 GLKYVVNEGDGAFYGPKIDFH---LKDSIGRTWQCGTIQLDMLLPEKF--------NLTY 497

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H    +     G++     ++    +     +P  +AP ++ ++ I       
Sbjct: 498 TGEDGQKHRPVMIHRVVYGSIERFIGILI---ENYAGAFPAWLAPEQVRVMPITDK---F 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +  ++  +G     DD  E+IG +     +   P  ++VG K  ++  V ++ R
Sbjct: 552 NEYAKSVVDKMEALGIRAHLDDRNEKIGYKIREGQVKKVPYMLVVGEKEATNGTVSVRSR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
             G    M+++E I          +
Sbjct: 612 SEGEMGAMAVDEFIAKLQKEIKEKK 636


>gi|303242609|ref|ZP_07329085.1| threonyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302589866|gb|EFL59638.1| threonyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 635

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 159/442 (35%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    I++   G   ++P G    + +    REE    G
Sbjct: 231 YLFRLEEAKKRDHRKLGKELDLFD--IYEEGPGFPFFMPKGMMLRNLLENYWREEHKARG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + DLW  SG +D Y + M      ++      P +      +++  + SY
Sbjct: 289 YQEIRTPIILNEDLWHRSGHWDHYKENM-YFTKIDEGDYAIKPMNCPGGMLVYKRKLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+ F +TPE  K     +       
Sbjct: 348 RDLPQRMAELGLVHRHELSGALHGLMRVRCFTQDDAHIF-MTPEQIKDEVLGVINLIDDF 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           ++  G K   +   + P     S E                   +    +     D    
Sbjct: 407 YNVFGFKYH-VELSTRPEDSMGSDE-----------------QWEMATNALRDALDARKM 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H E   DS+    +     ++    F    ++       + G
Sbjct: 449 NYKVNEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQMPQRFD----LNYVG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++    A++     G    W   ++P ++ ++ +         
Sbjct: 498 ADGEKHRPVMIHRVVFGSIERFIAILTEHFAGAFPTW---LSPVQVKILPLIDKHH---Q 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A L   G  V  D   E+IG +   A L   P  +++G K + +  V ++ R  
Sbjct: 552 FAGEVKAALEAKGVRVEVDLRNEKIGYKIREAQLEKTPYMLVIGDKELENGAVAVRSRKD 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M+L + +N       + 
Sbjct: 612 GDLGSMALNDFVNKIVEEVESK 633


>gi|300914721|ref|ZP_07132037.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter sp. X561]
 gi|300889656|gb|EFK84802.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter sp. X561]
          Length = 634

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 91/442 (20%), Positives = 160/442 (36%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLHMLEEAKKRDHRKLGKELDLFS--IHPEGPGFPFFHPKGMIIRNILEDFWRKEHIKHG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M    + + +     P +      +++S + SY
Sbjct: 288 YQEIKTPIILNEELWRRSGHWDHYKENM-YFTEIDGETYAIKPMNCPGAMLVYKSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+   +TPE  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAH-LFMTPEQVEDEILGVINLVDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E                   +    +  +  + +  
Sbjct: 406 YKIFGFEY-FVELSTRPENSMGSDE-----------------DWELATNALISALNRVNL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+        R  + G I     +        + G
Sbjct: 448 PYKVNEGDGAFYGPKIDFH---LKDSIG-------RTWQCGTI-QLDFQMPERFELEYIG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++     G    W   +AP ++ ++ I         
Sbjct: 497 PDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPISDKH---YA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y RL +       D+  E++G +   A L   P  +IVG K V    V ++ R  
Sbjct: 551 YAQNVYGRLLENDIRAELDERNEKVGYKIREAQLQKIPYMLIVGDKEVEQGTVSLRSRKE 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +SL E I       +  
Sbjct: 611 GDLGAISLSEFIEKILKEIATK 632


>gi|225181661|ref|ZP_03735101.1| threonyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225167642|gb|EEG76453.1| threonyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 636

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 92/450 (20%), Positives = 168/450 (37%), Gaps = 44/450 (9%)

Query: 2   RRSKY--FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           +RS+   +L  L+E   RD      +L L +  I     G     P G    + +    R
Sbjct: 225 KRSQLDEYLHRLEEAKKRDHRKLGRELDLFS--IQDEGPGFPLLHPRGMIIRNALEEFWR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  + G  E+  P + +  LW  SG +D Y + M      +++     P +      ++
Sbjct: 283 EEHRKAGYDEIKTPIILNRVLWERSGHWDHYQENM-YFTKIDEQDFSVKPMNCPGSMLVY 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++ + SYR+LP    ++ L  R EL     G+MR R F   DA+ F L P   K    K+
Sbjct: 342 KTKMHSYRDLPVRMGELGLVHRHELSGTLHGMMRVRAFTQDDAHIFML-PSQIKEEVAKV 400

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                R+++  G                   ++ V   T   +   S +  D    +   
Sbjct: 401 IELTDRVYNVFG------------------FDYHVELSTKPEKAMGSDEMWDVATNALRE 442

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             ++      I E   A Y    D H   L DS+    +     ++    F    K+ + 
Sbjct: 443 VLEERGMQFVINEGDGAFYGPKIDFH---LQDSIGRTWQCGTIQLD----FQMPEKFDIH 495

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G DG+ H    +     G++    AV+    +     +P  +AP ++ ++ I  
Sbjct: 496 ----YVGEDGQKHRPAVIHRVIYGSIERFMAVLI---EHFAGAFPVWLAPQQVVVLPITD 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    + +  R  + G     D   E+IG +   A +   P  ++VG K +   +V
Sbjct: 549 KHH---QYAQTLVERFREAGVRAEADVRNEKIGYKIREAQVQKVPYMLVVGDKEMEAGQV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++ R  G    M ++  +   +   +N +
Sbjct: 606 SVRERAAGDVGSMEVDAFLAKITAEIANKQ 635


>gi|291559712|emb|CBL38512.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase
           [butyrate-producing bacterium SSC/2]
          Length = 641

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 95/442 (21%), Positives = 163/442 (36%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M+ +   G   +LP G    + +    RE   + G
Sbjct: 230 YLTMMEEARKRDHRKLGKELGLF--MMREEGPGFPFFLPKGMVLKNTLLDYWREIHQKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + S  LW  SG +D Y + M      +D+     P +      ++ S  +SY
Sbjct: 288 YVEISTPIMLSRHLWETSGHWDHYKENMYT-TVIDDQDFAIKPMNCPGGVLVYDSEPRSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E   +  G+MR R F   DA+ F +TP+  K     +     ++
Sbjct: 347 RDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPDQIKDEIKGVAGLIDQV 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           ++  G K   +   + P     S E                   +    S     DD+  
Sbjct: 406 YNLFGFKYH-VELSTRPDDSMGSDE-----------------DWELATDSLRAALDDLGL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H E   DS+    +     ++    F    ++ L     + G
Sbjct: 448 DYVVNEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQLPLRFDLH----YTG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++     G    W   +AP ++ +I I        D
Sbjct: 497 ADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVEVIPISDKH---LD 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L   G     D   E++G +   A L   P  ++VG K   +  V ++ R  
Sbjct: 551 YANKVLDTLKAAGIRADIDTRAEKMGYKIREAQLQKIPYMLVVGGKEEENGAVSVRSRFK 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M L++ +       +N 
Sbjct: 611 GDEGQMKLDDFLAAIKEEIANR 632


>gi|302389962|ref|YP_003825783.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200590|gb|ADL08160.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase
           [Thermosediminibacter oceani DSM 16646]
          Length = 637

 Score =  280 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 89/443 (20%), Positives = 158/443 (35%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L +  +H+   G   + P G    + +    R+E  + 
Sbjct: 233 EYLKKLEEAKKRDHRKLGKELGLFS--MHEEGPGFPFFHPKGMVLWNTLIDFWRKEHQKR 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + + +LW  SG +D Y   M      + +     P +      +++S + S
Sbjct: 291 GYQEIKTPIILNEELWKRSGHWDHYKTNM-YFTQIDGEGYAIKPMNCPGGILVYKSDVHS 349

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++ L  R EL     G+MR R F   DA+ + +  +  +     +  +   
Sbjct: 350 YRELPLKLAELGLVHRHELSGVLHGLMRVRSFTQDDAHIYMMPSQIEQEILEVI--NLAD 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
             +R+      +   + P       E                   +    +     D   
Sbjct: 408 HIYRIFGFDYHVELSTRPENSMGPDE-----------------LWERATAALKNALDKKG 450

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D H   L DS+        R  + G I             T+ 
Sbjct: 451 LPYRINEGDGAFYGPKIDFH---LKDSIG-------RTWQCGTI-QLDFMMPERFDLTYI 499

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG+ H    +     G++     ++    +     +P  +AP ++ ++ I    +   
Sbjct: 500 GPDGEKHRPVMIHRTIFGSLERFIGILI---EHYAGAFPVWLAPIQVKVLPI---SEKFM 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+ A L      V  D+  E+IG +   A L   P  +IVG K  ++  V ++ R 
Sbjct: 554 DYARKVTAELENSDIRVELDERNEKIGYKIREAQLQKIPYMLIVGEKEAAEGTVSVRVRE 613

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G     SL++ I   + R  N 
Sbjct: 614 KGDVGMKSLKDFIEEVTTRIKNK 636


>gi|147678291|ref|YP_001212506.1| threonyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
 gi|146274388|dbj|BAF60137.1| threonyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
          Length = 640

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 88/443 (19%), Positives = 152/443 (34%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L +  IH    G   + P G    + +    REE  + 
Sbjct: 235 EYLFRLEEAKRRDHRKLGAELDLFS--IHDEGPGFPFFHPKGMILRNELEKFWREEHQKR 292

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + S +LW  SG ++ Y + M      +D      P +      I+++ + S
Sbjct: 293 GYQEIRTPVILSRNLWERSGHWEHYRENM-YFTRIDDGDYAVKPMNCPGSILIYKNRLHS 351

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++ L  R EL     G+MR R F   DA+ F L P   K     +      
Sbjct: 352 YRELPIRLAELGLVHRHELSGVLHGLMRVRCFTQDDAHIFML-PSQVKEEIIGVIELVDD 410

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            +   G                      V   T   +   S +  +    +     +   
Sbjct: 411 FYRVFGFPY------------------HVELSTRPEKAMGSDETWEMATGALRDALEARG 452

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   L DSL    +     ++    F    K+      T+ 
Sbjct: 453 LDYRVNEGDGAFYGPKIDFH---LQDSLGRTWQCGTIQLD----FLMPEKFD----LTYI 501

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG+ H    +     G++     ++    +     +P  +AP ++ ++ I        
Sbjct: 502 GEDGQKHRPVMIHRVVFGSIERFIGILT---EHFAGAFPAWLAPVQVRVLPIADRHAG-- 556

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               K+   L+  G     D   E+IG +   A     P  ++ G K   +  V ++HR 
Sbjct: 557 -YARKVLDCLTGAGIRAELDARNEKIGYKIREAQAQKIPYMLVTGDKEAENGTVAVRHRT 615

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           TG    + L   ++       + 
Sbjct: 616 TGDMGAIPLGGFVDKLLDEIKSK 638


>gi|289578715|ref|YP_003477342.1| threonyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
 gi|289528428|gb|ADD02780.1| threonyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
          Length = 635

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 93/443 (20%), Positives = 160/443 (36%), Gaps = 43/443 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLHMLEEAKKRDHRKLGKELDLFS--IHPEGPGFPFFHPKGMIIRNILEDFWRKEHMKHG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M    + + +     P +      +++S + SY
Sbjct: 288 YQEIKTPIILNEELWRRSGHWDHYKENM-YFTEIDGETYAIKPMNCPGAMLVYKSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+   +TPE  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGVLHGLMRVRSFTQDDAH-LFMTPEQVEDEILGVINLVDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E                   +    +  +  + +  
Sbjct: 406 YKIFGFEY-FVELSTRPENSMGSDE-----------------DWELATNALISALNRVNL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+        R  + G I     +        + G
Sbjct: 448 PYKVNEGDGAFYGPKIDFH---LKDSIG-------RTWQCGTI-QLDFQMPERFELEYIG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++     G    W   +AP ++ ++ I         
Sbjct: 497 PDGEKHRPIMLHRVIYGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPISDKH---YA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL-LGFPLQVIVGSKFVSDSKVEIKHRL 422
             + +Y RL +       DD  E+IG +   A L    P  +IVG K V    V ++ R 
Sbjct: 551 YAQNVYGRLLENDIRAELDDRNEKIGYKIREAQLQKKIPYMLIVGDKEVEQGTVSLRSRK 610

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G    +SL E I       +  
Sbjct: 611 EGDLGAISLSEFIEKILKEIATK 633


>gi|266620391|ref|ZP_06113326.1| threonine--tRNA ligase [Clostridium hathewayi DSM 13479]
 gi|288868018|gb|EFD00317.1| threonine--tRNA ligase [Clostridium hathewayi DSM 13479]
          Length = 633

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 90/443 (20%), Positives = 162/443 (36%), Gaps = 41/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L T M      G   +LP G    + +    RE   R G
Sbjct: 230 YLTRIEEAKKRDHRKLGKELGLFTIM--DEGPGFPFFLPKGMVLKNALTNFWREIHEREG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E++ P + +  LW  SG +D Y + M      +D      P +      +++S  +SY
Sbjct: 288 YVEIATPIMLNRSLWETSGHWDHYKENMYTTT-IDDTEFAIKPMNCPGSMLVYKSQPRSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E      G+MR R F   DA+ +    + +      +      +
Sbjct: 347 RDLPLRMGELGLVHRHEKSGALHGLMRVRCFTQDDAHIYMTPEQITDE-IKGVVRLIDEV 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           ++  G K   +   + P     S E                   +    S     D++  
Sbjct: 406 YNMFGFKYH-VELSTRPEDSMGSDE-----------------DWEMATNSLREALDEMGY 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H E   DSL    +     ++    F    ++     A + G
Sbjct: 448 DYIINEGDGAFYGPKIDFHLE---DSLGRTWQCGTIQLD----FQLPLRF----EAEYTG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +    +G++     ++    +     +P  +AP ++ ++ I   +     
Sbjct: 497 ADGEKHRPIMIHRVLLGSIERFIGILI---EHYAGKFPAWLAPVQVKVLPISDKNA---A 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y  L K       D+  E+IG +   A L   P  ++ G+K   +  V +++R +
Sbjct: 551 YAKDVYNTLKKNHIRCEIDERPEKIGYKIREAQLEKVPYMLVAGAKEEENHTVAVRYRDS 610

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
           G    MS+E+            +
Sbjct: 611 GENVTMSVEDFAEMLKKEIEERK 633


>gi|326795752|ref|YP_004313572.1| threonyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
 gi|326546516|gb|ADZ91736.1| threonyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
          Length = 638

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 147/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      KL L    + + + G+  W P G +    V   +R++Q    
Sbjct: 232 YLLRIEEAEKRDHRKLGKKLDLF--HVQEEAPGMVFWHPKGWRLYQAVEQYMRQKQLDNN 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +  Y + M       ++     P +      ++   +KSY
Sbjct: 290 YQEVKTPQIVDRVLWEKSGHWGKYQENMFT-THSENRDYAVKPMNCPCHIQVYNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LPF   +     R+E      G+MR R F+  D + F  T    +   ++       +
Sbjct: 349 RDLPFRMAEFGSCHRNEPSGALHGIMRVRNFVQDDGHIFV-TENQIQSEVSEFIKLLHEV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +I  R  + P     S E    A+                +P E         
Sbjct: 408 YADFGFDNIIYRLSTRPEQRVGSDEVWDKAEKALADALDVAGLEWEELPGE--------- 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D++    +     ++       G        A +  
Sbjct: 459 --------GAFYGPKIEF---SLKDAIGRVWQCGTIQVDFSMPTRLG--------AQYVS 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +    +G++     ++    +G   +W        +++           +
Sbjct: 500 EDGSRQTPVMLHRAIVGSLERFIGILIEETEGSFPLWLAPEQVVIMNIT------DRQTE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            CE +   L+  G     D   E+IG +     L   P  ++VG K V + KV ++ R  
Sbjct: 554 YCENLEKTLNSNGFRAKLDLRNEKIGFKIREHTLQRIPYLIVVGDKEVENGKVAVRTRSG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+ E  +      +  
Sbjct: 614 EDLGVMSVNEFEDLLRDEVARR 635


>gi|167570156|ref|ZP_02363030.1| threonyl-tRNA synthetase [Burkholderia oklahomensis C6786]
          Length = 635

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 149/443 (33%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I + S G+  W P G      V   +R   +  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HIQEESPGMVFWHPKGWTLWQQVEQYMRRRLDAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAVKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    + +  +        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEEQINSEAIAFN-KLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+ G  +   +       +P E         
Sbjct: 407 YEDFGFDRIDIKLSLRPEQRMGSDETWDHAEDGLRKALKACGVEWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMMLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G    W        +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAWLAPAHAVVLNIA------ESQVE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAQTVAQSLQKQGLRVSADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +          +
Sbjct: 613 VDLGVMPVEAFVERLREDIQAFK 635


>gi|167562968|ref|ZP_02355884.1| threonyl-tRNA synthetase [Burkholderia oklahomensis EO147]
          Length = 635

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 149/443 (33%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I + S G+  W P G      V   +R   +  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HIQEESPGMVFWHPKGWTLWQQVEQYMRRRLDAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAVKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    + +  +        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEEQINSEAIAFN-KLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+ G  +   +       +P E         
Sbjct: 407 YEDFGFDRIDIKLSLRPEQRMGSDETWDHAEDGLRKALKACGVEWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMMLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G    W        +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAWLAPAHAVVLNIA------ESQVE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAQTVAQSLQKQGLRVSADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +          +
Sbjct: 613 VDLGVMPVEAFVERLREDIQAFK 635


>gi|78066086|ref|YP_368855.1| threonyl-tRNA synthetase [Burkholderia sp. 383]
 gi|123756187|sp|Q39H55|SYT_BURS3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77966831|gb|ABB08211.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Burkholderia
           sp. 383]
          Length = 635

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 149/442 (33%), Gaps = 39/442 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFNT-LAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     + E    A+ G      +       +P E         
Sbjct: 407 YKDFGFDHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLTWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G +Y          
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMVLPERLGAEY-------VAD 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              +   V +    +G+M     ++   H G    W        +++       +   + 
Sbjct: 500 DSSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAWLAPFQAVVLNIA------ESQAEY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R   
Sbjct: 554 AQSLAQSLQKQGVRVTADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGGV 613

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               M +E  +        + +
Sbjct: 614 DLGVMPVEAFVERLQEDLRSFK 635


>gi|167769368|ref|ZP_02441421.1| hypothetical protein ANACOL_00694 [Anaerotruncus colihominis DSM
           17241]
 gi|167668336|gb|EDS12466.1| hypothetical protein ANACOL_00694 [Anaerotruncus colihominis DSM
           17241]
          Length = 635

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 160/449 (35%), Gaps = 44/449 (9%)

Query: 2   RRSKY--FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           + S+   +L +L+E  R D      +L L    I++   G   + P G    + + +  R
Sbjct: 224 KASELSDYLHMLEEAKRRDHRKLGRELDLFD--IYEEGPGFPFFFPKGMILRNLLESFWR 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  + G  E+  P + + +LW  SG +D Y   M      +D+     P +      ++
Sbjct: 282 EEHQKHGYQEIRTPLILNEELWHRSGHWDHYKDNMYT-TKIDDRDYAIKPMNCPGGILVY 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  + SYR+LP    ++ +  R EL     G+MR R F   DA+ F +TP+  +     +
Sbjct: 341 KRRMNSYRDLPQRLAELGIVHRHELSGALHGLMRVRCFTQDDAHIF-MTPDQIEAEVLGV 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 I+   G     +   + P     S E                   +    +   
Sbjct: 400 INLIDSIYRVFGFDYF-LELSTRPEDSMGSEE-----------------QWETATAALRK 441

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +D     ++ E   A Y    D H   L DS+    +     ++    F    ++   
Sbjct: 442 ALEDNGRPYTVNEGDGAFYGPKIDFH---LRDSIGRTWQCGTIQLD----FQMPERFD-- 492

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G+DG+ H    +     G++     ++   + G   +W   V    + +     
Sbjct: 493 --LAYIGSDGERHRPVMVHRTAFGSIERFIGILIEHYAGAFPLWLAPVQIKVLPVT---- 546

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    + +   L++ G  +  D   E++G +   A L   P  +++G K     +V
Sbjct: 547 --DEHIPYAQSVADTLTRAGLRIELDSRNEKVGYRIREAQLQKIPYMLVLGGKEAESGEV 604

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G    M L + +          
Sbjct: 605 AVRDRRDGKTTTMLLADFVEKMKTEVETK 633


>gi|332798664|ref|YP_004460163.1| threonyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
 gi|332696399|gb|AEE90856.1| threonyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
          Length = 636

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/436 (20%), Positives = 162/436 (37%), Gaps = 41/436 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L +  IH+   G   + P G    + +    R+E ++ 
Sbjct: 232 EYLTRIEEAKRRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIIWNLLTDFWRKEHSKR 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + + +LW  SG +D Y + M      +D      P +      ++++  +S
Sbjct: 290 GYQEIKTPIILNEELWRRSGHWDHYKENM-YFTKIDDMNYAVKPMNCPGGILMYKTDSRS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ L  R EL     G+MR R F   DA+ F + P   +     +      
Sbjct: 349 YRDLPIRLGELGLVHRHELSGVLHGLMRVRCFTQDDAHIF-MMPSQIEDEIIGVIDLVDY 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            +   G +   +   + P     S E                   D    +     D   
Sbjct: 408 FYQIFGFEYN-VELSTRPENSMGSDE-----------------LWDQATAALQGALDKKG 449

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D H   L DSL    +     ++    F    ++      ++ 
Sbjct: 450 MSYKINEGDGAFYGPKIDFH---LKDSLGRTWQCGTIQLD----FQMPERFD----LSYI 498

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG+ H    +     G++     ++    +     +P  +AP +  ++ I    +   
Sbjct: 499 GADGEKHRPVMIHRVIFGSIERFIGILI---EHYAGAFPVWLAPVQARVLPI---SEKHM 552

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+  +L + G  V  D+  E+IG +   A +   P  +IVG K  +++ V ++ R 
Sbjct: 553 DYAYKVKKQLEEAGIRVEVDERNEKIGYKVRDAQMKKIPYMLIVGDKEANENTVSVRTRE 612

Query: 423 TGIREDMSLEEVINYA 438
            G      +E  I+  
Sbjct: 613 KGDVGQKPIETFIDEV 628


>gi|83719712|ref|YP_443111.1| threonyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|167620276|ref|ZP_02388907.1| threonyl-tRNA synthetase [Burkholderia thailandensis Bt4]
 gi|123767616|sp|Q2SVD8|SYT_BURTA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|83653537|gb|ABC37600.1| threonyl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 635

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 148/443 (33%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I + + G+  W P G      V   +R   +  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HIQEEAPGMVFWHPKGWTLWQRVEQYMRRRLDAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    + +  +        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQINSEAIAFN-KLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+ G      +       +P E         
Sbjct: 407 YEDFGFDRIDIKLSLRPEQRMGSDETWDHAEEGLRNALKACGLEWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMMLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G    W        +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAWLAPFHAVVLNIA------ESQAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAQTVVQSLQKQGLRVSADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +          +
Sbjct: 613 VDLGVMPVEAFVERLREDIQAFK 635


>gi|300856610|ref|YP_003781594.1| threonyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
 gi|300436725|gb|ADK16492.1| threonyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
          Length = 637

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 162/442 (36%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +  IH+   G   + P G    + +    R+  ++ G
Sbjct: 231 YLTMMEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMIIRNELQNYWRQVHHKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW +SG +D Y + M      +D+     P +      ++++ I SY
Sbjct: 289 YDEIMTPIILNEELWHQSGHWDHYKENM-YFTKIDDEDYAIKPMNCPGSILVYKNKIHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + ++ +  R E      G+MR R F   DA+ F           N +    +  
Sbjct: 348 RDLPIRYGEMGIVHRHEKSGALHGLMRVRCFTQDDAHIFMTKDNMKDEIVNVIK--LIDS 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F+++      +   + P     S E                   +            +  
Sbjct: 406 FYKVFKFEYFVELSTRPEDSMGSDE-----------------DWEAATEGLKDALKAVGL 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+    +     ++    F    ++      T+ G
Sbjct: 449 DYKVNEGDGAFYGPKIDFH---LKDSIGRTWQCGTVQLD----FQMPERFD----LTYVG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++    +     +P  +AP ++ ++NI        D
Sbjct: 498 ADGEKHRPVMVHRVVFGSIERFIGILI---ENYAGAFPAWLAPVQVEVMNIT---DAQDD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L +    V  D   E+IG +   A +   P  +++G K + D  + ++ R  
Sbjct: 552 YVNEVVEKLKENDIRVESDMRNEKIGYKIREAQMQKVPYMIVLGEKEMKDKTISVRSRKG 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M+L++ I+         
Sbjct: 612 GDMGTMALDDFISKLKDEIDKK 633


>gi|255526047|ref|ZP_05392970.1| threonyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255510233|gb|EET86550.1| threonyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 638

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/440 (18%), Positives = 153/440 (34%), Gaps = 42/440 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    RE  +   
Sbjct: 231 YLNMLEEAKKRDHRKLGKELDLFS--MHEEGPGFPFFHPKGMIIRNTLQNFWREMHSAAD 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG +D Y + M      +++     P +      ++++ I SY
Sbjct: 289 YDEIMTPVILNEKLWRQSGHWDHYKENM-YFTKIDNEDYAIKPMNCPGSILVYKNTIHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + ++ L  R E      G+MR R F   DA+ F      +    N +    +  
Sbjct: 348 RELPLRYAEMGLAHRHEKSGALHGLMRVRCFTQDDAHMFLAKDNITDEIVNVIK--LIDD 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F+++      +   + P     S E                   +          D I  
Sbjct: 406 FYKVFGFEYFVELSTRPEDSMGSDE-----------------DWEAATNGLRKALDTIGL 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H           +    R  + G +     +       T+ G
Sbjct: 449 KYKVNEGDGAFYGPKIDFHL----------RDCIGRTWQCGTV-QLDFQMPERFDLTYIG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++   + G    W   V    +++           D
Sbjct: 498 ADGEKHRPVMVHRVVFGSVERFIGILIEHYAGAFPAWLAPVQVKIMNIT------DDQID 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V  D   E+IG +   A L   P  +++G K + ++ V ++ R  
Sbjct: 552 YANKVAKELKKNKIRVEVDLRNEKIGYKIREAQLQKVPYMLVLGDKEMKENTVAVRSRKL 611

Query: 424 GIREDMSLEEVINYASHRFS 443
           G    M+L++ +        
Sbjct: 612 GDLGAMALDQFVEKIKGEID 631


>gi|323704478|ref|ZP_08116056.1| threonyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535940|gb|EGB25713.1| threonyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 634

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 88/441 (19%), Positives = 159/441 (36%), Gaps = 40/441 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLNMLEEAKKRDHRKLGKELDLFS--IHNEGPGFPFFHPKGMILRNILEDFWRKEHAKRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M      +D+     P +      ++ S + SY
Sbjct: 288 YQEIKTPIILNEELWHRSGHWDHYKENM-YFTKIDDEDYAIKPMNCPGALLVYNSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+   +TP+  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGALHGLMRVRSFTQDDAH-LFMTPDQVESEILGVIKLIDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E                   +    +     + I  
Sbjct: 406 YKIFGFEY-FVELSTRPENSIGSDE-----------------DWELATNALIKAMEHIGL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+    +     ++    F    +++         
Sbjct: 448 NYKVNEGDGAFYGPKIDFH---LKDSIGRTWQCGTIQLD----FQMPERFNCEY---VGD 497

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              K   V +     G++    A++    +     +P  +AP ++ ++ I          
Sbjct: 498 DGEKHRPVMLHRVVFGSIERFIAILT---ENFAGAFPTWLAPVQVKILPISDKH---LAY 551

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + I+ RL +    V  DD  E+IG +   A +   P  +I+G K V    V ++ R  G
Sbjct: 552 AQNIHERLLENDIRVELDDRNEKIGYKIREAQMQKIPYMLILGDKEVEAGNVSVRSRKEG 611

Query: 425 IREDMSLEEVINYASHRFSNN 445
                SL+E ++         
Sbjct: 612 DLGSKSLQEFLSSILEEIKQK 632


>gi|53719558|ref|YP_108544.1| threonyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|53725296|ref|YP_102787.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|76810857|ref|YP_333290.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121600801|ref|YP_992866.1| threonyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124385818|ref|YP_001026205.1| threonyl-tRNA synthetase [Burkholderia mallei NCTC 10229]
 gi|126441516|ref|YP_001058752.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 668]
 gi|126449349|ref|YP_001080524.1| threonyl-tRNA synthetase [Burkholderia mallei NCTC 10247]
 gi|126453502|ref|YP_001066005.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|134282197|ref|ZP_01768902.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|167003090|ref|ZP_02268880.1| threonine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|167719848|ref|ZP_02403084.1| threonyl-tRNA synthetase [Burkholderia pseudomallei DM98]
 gi|167738851|ref|ZP_02411625.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 14]
 gi|167816071|ref|ZP_02447751.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 91]
 gi|167824445|ref|ZP_02455916.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 9]
 gi|167845979|ref|ZP_02471487.1| threonyl-tRNA synthetase [Burkholderia pseudomallei B7210]
 gi|167894556|ref|ZP_02481958.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 7894]
 gi|167902959|ref|ZP_02490164.1| threonyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
 gi|167911196|ref|ZP_02498287.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 112]
 gi|167919220|ref|ZP_02506311.1| threonyl-tRNA synthetase [Burkholderia pseudomallei BCC215]
 gi|217423341|ref|ZP_03454842.1| threonine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|226199711|ref|ZP_03795264.1| threonine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|237812016|ref|YP_002896467.1| threonine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|238562605|ref|ZP_04610138.1| threonine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|242317788|ref|ZP_04816804.1| threonine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|254177492|ref|ZP_04884147.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|254180004|ref|ZP_04886603.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|254188582|ref|ZP_04895093.1| threonyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|254197889|ref|ZP_04904311.1| threonyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|254199739|ref|ZP_04906105.1| threonyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|254206061|ref|ZP_04912413.1| threonyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|254259413|ref|ZP_04950467.1| threonine--tRNA ligase [Burkholderia pseudomallei 1710a]
 gi|254297839|ref|ZP_04965292.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|254358432|ref|ZP_04974705.1| threonyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|73919776|sp|Q62KI2|SYT_BURMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73919777|sp|Q63TM2|SYT_BURPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123771913|sp|Q3JT13|SYT_BURP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223324|sp|A3MJT8|SYT_BURM7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223325|sp|A2S2N6|SYT_BURM9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223326|sp|A1V3R3|SYT_BURMS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223327|sp|A3NUI4|SYT_BURP0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223328|sp|A3N8T1|SYT_BURP6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|52209972|emb|CAH35944.1| threonyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|52428719|gb|AAU49312.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|76580310|gb|ABA49785.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121229611|gb|ABM52129.1| threonyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124293838|gb|ABN03107.1| threonine--tRNA ligase [Burkholderia mallei NCTC 10229]
 gi|126221009|gb|ABN84515.1| threonine--tRNA ligase [Burkholderia pseudomallei 668]
 gi|126227144|gb|ABN90684.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|126242219|gb|ABO05312.1| threonine--tRNA ligase [Burkholderia mallei NCTC 10247]
 gi|134246235|gb|EBA46324.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|147749335|gb|EDK56409.1| threonyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|147753504|gb|EDK60569.1| threonyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|148027559|gb|EDK85580.1| threonyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|157806992|gb|EDO84162.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|157936261|gb|EDO91931.1| threonyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|160698531|gb|EDP88501.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|169654630|gb|EDS87323.1| threonyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|184210544|gb|EDU07587.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|217393199|gb|EEC33220.1| threonine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|225928297|gb|EEH24331.1| threonine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|237505158|gb|ACQ97476.1| threonine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|238522290|gb|EEP85735.1| threonine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|242141027|gb|EES27429.1| threonine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|243061341|gb|EES43527.1| threonine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|254218102|gb|EET07486.1| threonine--tRNA ligase [Burkholderia pseudomallei 1710a]
          Length = 635

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 148/443 (33%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I + + G+  W P G      V   +R   +  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HIQEEAPGMVFWHPKGWTLWQQVEQYMRRRLDAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    + +  +        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQINSEAIAFN-KLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+ G      +       +P E         
Sbjct: 407 YEDFGFDRIDIKLSLRPEQRMGSDETWDHAEEGLRNALKACGLEWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMMLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G   +W        +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVWLAPAHAVVLNIA------ESQAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YARTVAQSLQKQGLRVSADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +          +
Sbjct: 613 VDLGVMPVEAFVERLREDIQAFK 635


>gi|317499591|ref|ZP_07957854.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893140|gb|EFV15359.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 641

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 95/442 (21%), Positives = 163/442 (36%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M+ +   G   +LP G    + +    RE   + G
Sbjct: 230 YLTMMEEARKRDHRKLGKELGLF--MMREEGPGFPFFLPKGMVLKNTLLDYWREIHQKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + S  LW  SG +D Y + M      +D+     P +      ++ S  +SY
Sbjct: 288 YVEISTPIMLSRHLWETSGHWDHYKENMYT-TVIDDQDFAIKPMNCPGGVLVYDSEPRSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E   +  G+MR R F   DA+ F +TP+  K     +     ++
Sbjct: 347 RDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPDQIKDEIKGVAGLIDQV 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           ++  G K   +   + P     S E                   +    S     DD+  
Sbjct: 406 YNLFGFKYH-VELSTRPDDSMGSDE-----------------DWELATDSLRAALDDLGL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H E   DS+    +     ++    F    ++ L     + G
Sbjct: 448 DYVVNEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQLPLRFDLH----YTG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++     G    W   +AP ++ +I I        D
Sbjct: 497 ADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVEVIPISDKH---LD 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L   G     D   E++G +   A L   P  ++VG K   +  V ++ R  
Sbjct: 551 YANKVLDTLKAAGIRADIDTRAEKMGYKIREAQLQKIPYMLVVGGKEEENEAVSVRSRFK 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M L++ +       +N 
Sbjct: 611 GDEGQMKLDDFLAAIKEEIANR 632


>gi|167766936|ref|ZP_02438989.1| hypothetical protein CLOSS21_01453 [Clostridium sp. SS2/1]
 gi|167710911|gb|EDS21490.1| hypothetical protein CLOSS21_01453 [Clostridium sp. SS2/1]
          Length = 645

 Score =  277 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 95/442 (21%), Positives = 164/442 (37%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M+ +   G   +LP G    + +    RE   + G
Sbjct: 234 YLTMMEEARKRDHRKLGKELGLF--MMREEGPGFPFFLPKGMVLKNTLLDYWREIHQKAG 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + S  LW  SG +D Y + M      +D+     P +      ++ S  +SY
Sbjct: 292 YVEISTPIMLSRHLWETSGHWDHYKENMYT-TVIDDQDFAIKPMNCPGGVLVYDSEPRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E   +  G+MR R F   DA+ F +TP+  K     +     ++
Sbjct: 351 RDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPDQIKDEIKGVAGLIDQV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           ++  G K   +   + P     S E                   +    S     DD+  
Sbjct: 410 YNLFGFKYH-VELSTRPDDSMGSDE-----------------DWELATDSLRAALDDLGL 451

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H E   DS+    +     ++    F    ++ L     + G
Sbjct: 452 DYVVNEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQLPLRFDLH----YTG 500

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++     G    W   +AP ++ +I I        D
Sbjct: 501 ADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVEVIPISDKH---LD 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L   G     D   E++G +   A L   P  ++VG K   +  V ++ R  
Sbjct: 555 YANKVLDTLKAAGIRADIDTRAEKMGYKIREAQLQKIPYMLVVGGKEEENEAVSVRSRFK 614

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M L++ ++      +N 
Sbjct: 615 GDEGQMKLDDFLDAIKEEIANR 636


>gi|302871393|ref|YP_003840029.1| threonyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574252|gb|ADL42043.1| threonyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
          Length = 639

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 98/449 (21%), Positives = 169/449 (37%), Gaps = 44/449 (9%)

Query: 2   RRSKY--FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   +L +L+E   RD      +L L    I     G   +LP G    + +    R
Sbjct: 227 KKSQLDEYLTMLEEAKKRDHRKLGRELDLFD--IFDEGPGFPFFLPKGMIIRNILEDFWR 284

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  R G  E+  P + + DLW++SG +D Y + M      +D+     P +      ++
Sbjct: 285 EEHKRRGYQEIKTPIMLTKDLWIQSGHWDHYKENM-YFTKIDDQEFAIKPMNCPGSILVY 343

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +    SYR LP    ++ L  R EL     G+MR R F   DA+ F L P   K     +
Sbjct: 344 KRKSHSYRELPQRLCELGLVHRHELSGVLHGLMRVRCFTQDDAHIFML-PSQIKDEIKGV 402

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G K   +   + P     + E   +A+T                 +   
Sbjct: 403 IDLIDYFYSVFGFKYH-VELSTRPENSMGTDEQWNMAET-----------------ALKE 444

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +++     I E   A Y    D H E   DSL    + +   ++    F    ++   
Sbjct: 445 ALEEVGINYKINEGDGAFYGPKIDFHLE---DSLKRTWQCATIQLD----FQMPERFD-- 495

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G DG  H    +     G++    A++    +     +P  +AP +I +I +  
Sbjct: 496 --LYYIGEDGAKHRPVMLHRVVFGSIERFIAILT---EHFAGAFPVWLAPTQIRVIPVSD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +     D   KI   L + G  V  D   E +G +   A L   P  VIVG K   ++ +
Sbjct: 551 N---FNDYAAKISQTLKENGFRVEEDYRSETVGYKIRDAQLQKIPYMVIVGEKEQKENTI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G     +++E ++    +    
Sbjct: 608 AVRDRKKGDLGSFTIDEFVSMVKEKVEKK 636


>gi|325528727|gb|EGD05797.1| threonyl-tRNA synthetase [Burkholderia sp. TJI49]
          Length = 635

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 150/443 (33%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEEQFIAESIAFNT-LAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G      +       +P E         
Sbjct: 407 YKDFGFEHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLSWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G    W   +    +++       +   D
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAWLAPIQVVVMNIA------ESQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAQSLAQTLQKQGVRVTADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +        + +
Sbjct: 613 VDLGVMPVEAFVERLQEDLRSFK 635


>gi|221197733|ref|ZP_03570779.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2M]
 gi|221204709|ref|ZP_03577726.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221175566|gb|EEE07996.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221181665|gb|EEE14066.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2M]
          Length = 635

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 151/443 (34%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEEQFIAESIAFNT-LAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G      +       +P E         
Sbjct: 407 YKDFGFEHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLSWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G   +W   V    +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVWLAPVQAVVLNIA------ESQVE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAQSLAQTLQKQGVRVTADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +        + +
Sbjct: 613 VDLGVMPIEAFVERLQEDLRSFK 635


>gi|167582118|ref|ZP_02374992.1| threonyl-tRNA synthetase [Burkholderia thailandensis TXDOH]
          Length = 635

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 149/443 (33%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I + + G+  W P G      V   +R   +  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HIQEEAPGMVFWHPKGWTLWQQVEQYMRRRLDAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    + +  +        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQINSEAIAFN-KLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+ G      +       +P E         
Sbjct: 407 YEDFGFDRIDIKLSLRPEQRMGSDETWDHAEEGLRNALKACGLEWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMMLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G   +W        +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVWLAPFHAVVLNIA------ESQAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAQTVVQSLQKQGLRVSADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +          +
Sbjct: 613 IDLGVMPVEAFVERLREDIQAFK 635


>gi|206559848|ref|YP_002230612.1| threonyl-tRNA synthetase [Burkholderia cenocepacia J2315]
 gi|238693072|sp|B4E7I6|SYT_BURCJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|198035889|emb|CAR51780.1| threonyl-tRNA synthetase [Burkholderia cenocepacia J2315]
          Length = 635

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 149/443 (33%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFNT-LAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     + E    A+ G      +       +P E         
Sbjct: 407 YKDFGFDHIDIKLSLRPDQRAGTDETWDRAEQGLRDALTACGLTWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G   +W        +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVWLAPYQAIVLNIA------ESQAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAQSLAQSLQKQGVRVAADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +        + +
Sbjct: 613 VDLGVMPVEAFVERLQEDLRSFK 635


>gi|221214904|ref|ZP_03587872.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|221165131|gb|EED97609.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD1]
          Length = 635

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 151/443 (34%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEEQFIAESIAFNT-LAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G      +       +P E         
Sbjct: 407 YKDFGFEHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLSWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G   +W   V    +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVWLAPVQAVVLNIA------ESQVE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAQSLAQTLQKQGVRVTADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +        + +
Sbjct: 613 VDLGVMPVEAFVERLQEDLRSFK 635


>gi|304317243|ref|YP_003852388.1| threonyl-tRNA synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778745|gb|ADL69304.1| threonyl-tRNA synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 634

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 91/442 (20%), Positives = 161/442 (36%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  IH    G   + P G    + +    R+E  + G
Sbjct: 230 YLNMLEEAKKRDHRKLGKELDLFS--IHNEGPGFPFFHPKGMVIRNILEDFWRKEHAKRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P + + +LW  SG +D Y + M      + +     P +      ++ S + SY
Sbjct: 288 YLEIKTPIILNEELWHRSGHWDHYKENM-YFTKIDGEDYAIKPMNCPGALLVYNSTMHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+   +TP+  +     +       
Sbjct: 347 RDLPLRLCELGLVHRHELSGALHGLMRVRSFTQDDAH-LFMTPDQVESEILGVIKLIDYF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     +   + P     S E                   +    +     + I  
Sbjct: 406 YKIFGFDY-FVELSTRPENSIGSDE-----------------DWELATNALIKAMEHIGL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+        R  + G I     +     +  + G
Sbjct: 448 DYKVNEGDGAFYGPKIDFH---LKDSIG-------RTWQCGTI-QLDFQMPERFNCEYVG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++    A++    +     +P  +AP ++ ++ I         
Sbjct: 497 QDGEKHRPVMLHRVVFGSIERFIAILT---ENFAGAFPTWLAPVQVRILPISDKH---LA 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + I  RL +    V  DD  E+IG +   A +   P  +I+G K V    V ++ R  
Sbjct: 551 YAQNIQQRLLENDIRVELDDRNEKIGYKIREAQMQKIPYMLILGDKEVESGNVSVRSRKD 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G     S++E ++       N 
Sbjct: 611 GDIGSKSMQEFLSSILEEIKNK 632


>gi|161524952|ref|YP_001579964.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189350300|ref|YP_001945928.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|238687005|sp|A9ABF9|SYT_BURM1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160342381|gb|ABX15467.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189334322|dbj|BAG43392.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
          Length = 635

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 151/443 (34%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEEQIIAESIAFN-KLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+ G  +   +       +P E         
Sbjct: 407 YRDFGFDHIDIKLSLRPEQRMGSDETWDRAEQGLREALTACGLQWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMMLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G   +W   V    +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVWLAPVQAVVLNIA------ESQVE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAQSLAQTLQKQGLRVTADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +        + +
Sbjct: 613 VDLGVMPVEAFVERLQEDLRSFK 635


>gi|238027731|ref|YP_002911962.1| threonyl-tRNA synthetase [Burkholderia glumae BGR1]
 gi|237876925|gb|ACR29258.1| Threonyl-tRNA synthetase [Burkholderia glumae BGR1]
          Length = 635

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 151/442 (34%), Gaps = 39/442 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD    + +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLAKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F   ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFNHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFIAESIAFN-ELAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     + E    A+ G      +       +P E         
Sbjct: 407 YKDFGFDQISIKLSLRPDQRAGTDETWDRAEQGLRDALTACGLAWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G +Y          
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMVLPERLGAEY-------VAE 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +G+   V +    +G+M     ++   H G    W   V    +++       +   D 
Sbjct: 500 DNGRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAWLAPVQAIVMNIA------ENQADY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R   
Sbjct: 554 AGSLAQSLQKQGLRVEADLRNEKISYKIREHALEKVPYLLVVGDKEREAQTVAVRARGGV 613

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               M +E  + +        +
Sbjct: 614 ELGVMPVEAFVEHLQQDLRAFK 635


>gi|153835364|ref|ZP_01988031.1| threonyl-tRNA synthetase [Vibrio harveyi HY01]
 gi|148868112|gb|EDL67276.1| threonyl-tRNA synthetase [Vibrio harveyi HY01]
          Length = 642

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 145/442 (32%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   +R + +  G 
Sbjct: 234 LTRLEEAAKRDHRKLGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFVRSKLDEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLIMDRVLWERSGHWDKYADAMFT-TSSENREYALKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQEEVTNCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 410 QTFGFDNIVVKLSTRPEKRVGSDE-----------------IWDQSEEALKQSLESMEIP 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 453 YEIQEGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPGRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 NNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAILMNIT------DKQSDY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L K G     D   E+IG +     L   P  ++VG + +   ++ ++ R   
Sbjct: 556 VQEVVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 +++ I Y     S+ +
Sbjct: 616 DLGKFKVDDFIAYIQDEISSRK 637


>gi|170732802|ref|YP_001764749.1| threonyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
 gi|238688618|sp|B1K091|SYT_BURCC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169816044|gb|ACA90627.1| threonyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
          Length = 635

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 149/443 (33%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFNT-LAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     + E    A+ G      +       +P E         
Sbjct: 407 YKDFGFDHIDIKLSLRPDQRAGTDETWARAEQGLRDALTACGLTWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G   +W        +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVWLAPYQAIVLNIA------ESQAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAQSLTQTLQKQGVRVAADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +        + +
Sbjct: 613 VDLGVMPVEAFVERLQEDLRSFK 635


>gi|269963856|ref|ZP_06178168.1| threonyl-tRNA synthetase [Vibrio harveyi 1DA3]
 gi|269831343|gb|EEZ85490.1| threonyl-tRNA synthetase [Vibrio harveyi 1DA3]
          Length = 655

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 145/442 (32%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR + +  G 
Sbjct: 247 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSVFRDLEVFIRSKLDEYGY 304

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 305 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 363

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 364 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQEEVTNCIKMVYDTY 422

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 423 QTFGFDNIVVKLSTRPEKRVGSDE-----------------IWDQSEEALKQSLESMEIP 465

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 466 YEIQEGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPGRLG--------ATYVGE 514

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + +    V +    +G++     ++   + G    W        +++           + 
Sbjct: 515 NNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAILMNIT------DKQSEY 568

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L K G     D   E+IG +     L   P  ++VG + +   ++ ++ R   
Sbjct: 569 VQEVVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGK 628

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 +++ I Y     S+ +
Sbjct: 629 DLGKFKVDDFIAYIQDEISSRK 650


>gi|254252558|ref|ZP_04945876.1| Threonyl-tRNA synthetase [Burkholderia dolosa AUO158]
 gi|124895167|gb|EAY69047.1| Threonyl-tRNA synthetase [Burkholderia dolosa AUO158]
          Length = 635

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 151/443 (34%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNDAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEEQFIAESIAFNT-LAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G      +       +P E         
Sbjct: 407 YKDFGFEHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLSWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G   +W   +    +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVWLAPIQAVVLNIA------ESQAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAQSLAQTLQKQGVRVTADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M ++  +        + +
Sbjct: 613 VDLGVMPVDAFVERLQEDLRSFK 635


>gi|260777881|ref|ZP_05886774.1| threonyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605894|gb|EEX32179.1| threonyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 642

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 137/443 (30%), Gaps = 42/443 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR + +  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFIRAKLDEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQEEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 410 QTFGFDNIVVKLSTRPEKRVGSDE-----------------IWDQSEEALKQSLEAMNIE 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             + E   A Y    +     L D L    +     ++       G        AT+   
Sbjct: 453 YELQEGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFNLPGRLG--------ATYVDE 501

Query: 306 DGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           + +     M    I     R +  +IE              A                 D
Sbjct: 502 NNERQVPVMIHRAILGSLERFIGILIEEYFGFFPTWLSPEQAVIMNIT-------DKQSD 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R  
Sbjct: 555 YAQEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKG 614

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                  +++ I+Y     S+ +
Sbjct: 615 KDLGKFKVDDFISYIQDEISSRK 637


>gi|158321007|ref|YP_001513514.1| threonyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
 gi|158141206|gb|ABW19518.1| threonyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 636

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 151/442 (34%), Gaps = 41/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L +  + +   G   + P G    + +    REE  + G 
Sbjct: 234 LNRLEEAKKRDHRKLGKELDLFS--LQEEGPGFPFFHPRGMVLRNALENFWREEHVKRGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y + M      +D      P +      ++     SYR
Sbjct: 292 DEIKTPIILNEKLWRQSGHWDHYQENM-YFTKIDDGDYAIKPMNCPGSILMYNRKKHSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + P    ++ +  R EL     G+MR R F   DA+ F L  +  +     +      ++
Sbjct: 351 DFPIRMGELGIVHRHELSGALHGLMRVRNFTQDDAHLFVLPEQIKEE-IIGIIDFVDYVY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           +  G K       + P     + E                   +  I S     D+    
Sbjct: 410 NIFGFKYHI-ELSTRPENSMGTDE-----------------EWELAIGSLKGALDEKELS 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    D H E              R  + G I     +        + GA
Sbjct: 452 YKINEGDGAFYGPKIDFHLED----------CIGRTWQCGTI-QLDFQMPQRFDMNYVGA 500

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG++H    +     G++    A++    +     +P  +AP ++ ++ I        + 
Sbjct: 501 DGENHRPIMLHRVIFGSVERFIAILI---EHYAGKFPAWLAPIQVQILPIADKHH---EY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+   +   G  V  D   E+IG +   A L   P  +++G K +   +V ++ R  G
Sbjct: 555 AIKLEREMKARGIRVEVDSRNEKIGYKIREAQLSKVPYMLVIGDKEMEAGEVAVRSRDRG 614

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               + +E  I          +
Sbjct: 615 EVGAVKVESFIEDLVQEIKEKK 636


>gi|134299469|ref|YP_001112965.1| threonyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
 gi|189083605|sp|A4J4Y7|SYT_DESRM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|134052169|gb|ABO50140.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Desulfotomaculum reducens MI-1]
          Length = 635

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 153/441 (34%), Gaps = 41/441 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              I +   RD      +L L +  I +   G   + P G    + +    R+E  + G 
Sbjct: 232 LFRIEEAKRRDHRKLGQELDLFS--IQEEGPGFPFFHPKGMVLRNELENFWRQEHKKRGY 289

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  +W +SG +  Y   M      ++      P +      ++++ + SYR
Sbjct: 290 QEIRTPIILNRSMWEQSGHWAHYKDNM-YFTKIDEADYAVKPMNCPGSILVYKTRMHSYR 348

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP  + ++ L  R EL     G+MR R F   DA+ F L P   K     +   +   +
Sbjct: 349 DLPLRWGELGLVHRHELSGALHGLMRVRCFTQDDAHIFML-PSQIKDEIIGVIDLFDYFY 407

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           +  GL    +   + P     S E                   +    S     +     
Sbjct: 408 NTFGLNYH-VELSTRPEKSMGSDE-----------------MWEVATNSLRDALEAKKMD 449

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             + E   A Y    D H   L DSL        R  + G I     +     +  + G 
Sbjct: 450 YKVNEGDGAFYGPKIDFH---LTDSLG-------RTWQCGTI-QLDFQMPERFNLNYVGE 498

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H    +     G++     ++    +     +P  +AP ++ ++ I        + 
Sbjct: 499 DGQKHRPVMIHRVVFGSIERFIGILT---EHFAGAFPVWLAPVQVKVLPITDRHH---EY 552

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  RL  +   V  D   E+I  +   A     P  +++G + +    V ++ R  G
Sbjct: 553 ARELVKRLQGLDIRVELDARNEKINYKIREAQTQKIPYMLVIGDREMEQGAVAVRERGKG 612

Query: 425 IREDMSLEEVINYASHRFSNN 445
               +S+ + I        N 
Sbjct: 613 DVGAISVGDFIKKIEDDIQNK 633


>gi|162218055|ref|YP_620875.2| threonyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
 gi|162227933|ref|YP_835120.2| threonyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
 gi|254245609|ref|ZP_04938930.1| Threonyl-tRNA synthetase, class IIa [Burkholderia cenocepacia
           PC184]
 gi|124870385|gb|EAY62101.1| Threonyl-tRNA synthetase, class IIa [Burkholderia cenocepacia
           PC184]
          Length = 635

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 149/443 (33%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFNT-LAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     + E    A+ G      +       +P E         
Sbjct: 407 YKDFGFDHIDIKLSLRPDQRAGTDETWDRAEQGLRDALTACGLTWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G   +W        +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVWLAPYQAIVLNIA------ESQAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAQSLTQTLQKQGVRVAADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +        + +
Sbjct: 613 VDLGVMPVEAFVERLQEDLRSFK 635


>gi|134295547|ref|YP_001119282.1| threonyl-tRNA synthetase [Burkholderia vietnamiensis G4]
 gi|166223329|sp|A4JDU4|SYT_BURVG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|134138704|gb|ABO54447.1| Ser-tRNA(Thr) hydrolase [Burkholderia vietnamiensis G4]
          Length = 635

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 150/443 (33%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNDAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFIAESIAFNT-LAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G      +       +P E         
Sbjct: 407 YKDFGFEHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLTWQELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G   +W        +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVWLAPFQAIVLNIA------ESQAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAQSLAQTLQKQGVRVAADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +        + +
Sbjct: 613 VDLGVMPVEAFVERLQEDLRSFK 635


>gi|90579635|ref|ZP_01235444.1| threonyl-tRNA synthetase [Vibrio angustum S14]
 gi|90439209|gb|EAS64391.1| threonyl-tRNA synthetase [Vibrio angustum S14]
          Length = 643

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 148/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G      +   IRE+ N    
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFIREKLNEYDY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEAQVQQEVTSCIEMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S     + D  E+ +  + + M+ P   +          
Sbjct: 410 KTFGFDNIVVKLSTRPEKRVGSD---AMWDKAESDLITALESMEIPFEIQ---------- 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    +     L D L    +     ++       G        AT+ G 
Sbjct: 457 ----EGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFALPERLG--------ATYVGE 501

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D + H    +    +G++     ++   + G    W        +++           + 
Sbjct: 502 DNERHTPVMIHRAILGSLERFIGILIEDYAGFFPTWLAPQQAVVMNIT------DAQSEY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++I  +L K G  V  D   E+IG +     L   P  ++ G K V    V ++ R   
Sbjct: 556 VQEIVEKLKKCGIRVNADLRNEKIGFKIREHTLKRVPFMLVCGDKEVEAGVVAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 ++E++ +     S+ +
Sbjct: 616 DLGKFKIDELVAFMQEEISSRK 637


>gi|296187094|ref|ZP_06855492.1| threonyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296048288|gb|EFG87724.1| threonyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 560

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/440 (18%), Positives = 153/440 (34%), Gaps = 42/440 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    RE  +   
Sbjct: 153 YLNMLEEAKKRDHRKLGKELDLFS--MHEEGPGFPFFHPKGMIIRNTLQNFWREMHSAAD 210

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG +D Y + M      +++     P +      ++++ I SY
Sbjct: 211 YDEIMTPVILNEKLWRQSGHWDHYKENM-YFTKIDNEDYAIKPMNCPGSILVYKNTIHSY 269

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + ++ L  R E      G+MR R F   DA+ F      +    N +    +  
Sbjct: 270 RELPLRYAEMGLAHRHEKSGALHGLMRVRCFTQDDAHMFLAKDNITDEIVNVIK--LIDD 327

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F+++      +   + P     S E                   +          D I  
Sbjct: 328 FYKVFGFEYFVELSTRPEDSMGSDE-----------------DWEAATNGLRKALDTIGL 370

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H           +    R  + G +     +       T+ G
Sbjct: 371 KYKVNEGDGAFYGPKIDFHL----------RDCIGRTWQCGTV-QLDFQMPERFDLTYIG 419

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++   + G    W   V    +++           D
Sbjct: 420 ADGEKHRPVMVHRVVFGSVERFIGILIEHYAGAFPAWLAPVQVKIMNIT------DDQID 473

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V  D   E+IG +   A L   P  +++G K + ++ V ++ R  
Sbjct: 474 YANKVAKELKKNKIRVEVDLRNEKIGYKIREAQLQKVPYMLVLGDKEMKENTVAVRSRKL 533

Query: 424 GIREDMSLEEVINYASHRFS 443
           G    M+L++ +        
Sbjct: 534 GDLGAMALDQFVEKIKGEID 553


>gi|167836852|ref|ZP_02463735.1| threonyl-tRNA synthetase [Burkholderia thailandensis MSMB43]
          Length = 635

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 149/443 (33%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   +  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HLQEESPGMVFWHPKGWTLWQQVEQYMRRRLDAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    + +  +        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQINSEAIAFN-KLAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+ G      +       +P E         
Sbjct: 407 YADFGFDRIDIKLSLRPEQRMGSDETWDHAEEGLRNALKACGLEWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMMLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G   +W        +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVWLAPAHAVVLNIA------ESQAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAQTVAQSLQKQGLRVSADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +          +
Sbjct: 613 VDLGVMPVEAFVERLREDIQAFK 635


>gi|310827810|ref|YP_003960167.1| threonyl-tRNA synthetase [Eubacterium limosum KIST612]
 gi|308739544|gb|ADO37204.1| threonyl-tRNA synthetase [Eubacterium limosum KIST612]
          Length = 637

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 157/443 (35%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L +  +H+   G   + P G    + +    R E  + 
Sbjct: 229 EYLQRLEEAKKRDHRKLGKELDLFS--MHEEGPGFPFFHPKGMVLRNELENFWRSEHMKK 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +ADLW  SG +D+Y + M    + + +     P +      ++++   S
Sbjct: 287 GYKEIKTPIMLNADLWRRSGHWDNYKENM-YFTEIDGQEFAVKPMNCPGGMLVYKTRQHS 345

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++    R EL     G+MR R F   DA+ F LT +  K     +      
Sbjct: 346 YRELPLRMGELGQVHRHELHGALHGLMRVRTFTQDDAHIF-LTMDQVKDEVIGIIDLANE 404

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I+   G K                    V   T   +     +  +    +     +   
Sbjct: 405 IYDIFGFKYK------------------VELSTKPEKAIGKDEDWEVATDALREALEAKG 446

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               +     A Y    D H E              R  + G I     +       T+ 
Sbjct: 447 MDYQLNPGDGAFYGPKIDFHLED----------SIGRTWQCGTI-QLDMQMPERFDLTYV 495

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G+DG+ H    +     G++     ++     GK  +W   V    I +           
Sbjct: 496 GSDGEKHRPVILHRTIFGSIERFLGILIEHFAGKFPLWLAPVQVQLIPV------SDAHD 549

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              ++I A+L + G  V  D   E+IG +   A +   P  +++G K V   ++ I++R 
Sbjct: 550 AFTKEIAAKLEEAGIRVEIDFRDEKIGYRIREAQMQKIPYMLVIGDKEVESGRLSIRNRD 609

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           TG +E + ++E     +   +  
Sbjct: 610 TGEQETLKIDEFKYRLAQNIAQK 632


>gi|90021224|ref|YP_527051.1| threonyl-tRNA synthetase [Saccharophagus degradans 2-40]
 gi|123090560|sp|Q21KE0|SYT_SACD2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|89950824|gb|ABD80839.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Saccharophagus
           degradans 2-40]
          Length = 636

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 153/444 (34%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  L+E   RD      K  L    I + + G+  W P G      +   +RE Q  
Sbjct: 229 KAYVHRLEEAEKRDHRKLGKKFDLF--HIQEEAPGMVFWHPNGWSIYTAIEEYMREVQRL 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG +D +   M  + +   +     P +      +F   +K
Sbjct: 287 NGYEEIKTPQVVDRSLWERSGHWDKFRDNMFTV-ESESRDYAVKPMNCPCHVQVFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  +    +   +       
Sbjct: 346 SYRDLPLRLAEFGCCHRNEASGTLQGLMRVRGFVQDDAHIFC-SESMIQDEVSVFTDLLF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G + + +R  + P     S E                   D    + +   D  
Sbjct: 405 KVYKDFGFEDVIIRLSTRPEQRVGSDE-----------------VWDKAEKALSDALDAK 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                ++    A Y    +     L D L    +     ++                A F
Sbjct: 448 GLPWQLLPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQVDFSMPGRLD--------AQF 496

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG     V +    +G+      ++    +     +P  +AP +  L+NI  +    
Sbjct: 497 VAEDGSRQVPVMLHRAILGSFERFIGILI---EEYEGAFPAWLAPTQAVLLNITDN---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +K+   L   G  V  D   E+IG +     +   P  ++VG + V ++ V ++ R
Sbjct: 551 AEYVKKVENSLKNKGFRVNSDLRNEKIGFKIREHTIQKVPYLLVVGDQEVENNSVAVRGR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M+++        + S+ 
Sbjct: 611 GGEDLGVMTVDAFTALLEEQISSK 634


>gi|255280775|ref|ZP_05345330.1| threonine--tRNA ligase [Bryantella formatexigens DSM 14469]
 gi|255268712|gb|EET61917.1| threonine--tRNA ligase [Bryantella formatexigens DSM 14469]
          Length = 642

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/443 (20%), Positives = 151/443 (34%), Gaps = 43/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M+     G   +LP G    + +    RE   + G
Sbjct: 230 YITRMEEAKKRDHRKLGKQLGLF--MMRDEGPGFPFFLPNGMIVKNALLDYWREIHRKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + +  LW  SG +D Y + M      +D      P +      +++S  +SY
Sbjct: 288 YVEISTPIMLNRQLWETSGHWDHYRENMYT-TVIDDTDFAIKPMNCPGGILVYQSEPRSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +I L  R E   +  G+MR R F   DA+ F    +        +      +
Sbjct: 347 RDLPLRMGEIGLVHRHEKSGQLHGLMRVRCFNQDDAHIFMTPEQICDE-IKGVVKLIDEV 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K   +   + P     S E                   +       +  DD+  
Sbjct: 406 YQLFGFKYH-VELSTRPENSMGSDE-----------------DWEMATDGLRSALDDLGL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H E   DS+    +     ++    F    ++    +  + G
Sbjct: 448 DYVVNEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQLPLRF----NCEYIG 496

Query: 305 ADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           ADG+ H   M    +     R +  +IE                                
Sbjct: 497 ADGEKHRPIMIHRVVFGSVERFIGILIEHFAGAFPTWLSPEQVRVLPI-------SDKYL 549

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +K+ A L++ G     D   E+IG +   A L   P  ++VG+K   D KV ++ R 
Sbjct: 550 DYADKVNAALNENGIRSSVDTRAEKIGYKIREARLAKVPYMLVVGAKEEEDGKVSVRSRF 609

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G     +L++ I          
Sbjct: 610 LGDEGQKNLDDFIAAIKEEIRTR 632


>gi|56749447|sp|Q7MK65|SYT_VIBVY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 642

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IRE+    G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSVFRDLEVFIREKLTEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQDEVTNCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 410 QTFGFDNIAVKLSTRPEQRVGSDE-----------------IWDQSEEALKQALESMDIA 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     LFD L    +     ++       G        AT+ G 
Sbjct: 453 YEIQEGEGAFYGPKIEF---TLFDCLGRAWQCGTVQLDFNLPNRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 NNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVIMNIT------DKQADY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++I  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 556 VQEIAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAVRTRKGN 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 +++ ++Y   + ++ +
Sbjct: 616 DLGKFKVDDFVSYIQDQIASRK 637


>gi|27365716|ref|NP_761244.1| threonyl-tRNA synthetase [Vibrio vulnificus CMCP6]
 gi|31340449|sp|Q8DA13|SYT_VIBVU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|27361865|gb|AAO10771.1| threonyl-tRNA synthetase [Vibrio vulnificus CMCP6]
          Length = 642

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IRE+    G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSVFRDLEVFIREKLTEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQDEVTNCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 410 QTFGFDNIAVKLSTRPEQRVGSDE-----------------IWDQSEEALKQALESMDIA 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     LFD L    +     ++       G        AT+ G 
Sbjct: 453 YEIQEGEGAFYGPKIEF---TLFDCLGRAWQCGTVQLDFNLPNRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 NNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVIMNIT------DKQADY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++I  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 556 VQEIAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAVRTRKGN 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 +++ ++Y   + ++ +
Sbjct: 616 DLGKFKVDDFVSYIQDQIASRK 637


>gi|323526736|ref|YP_004228889.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1001]
 gi|323383738|gb|ADX55829.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1001]
          Length = 635

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 148/441 (33%), Gaps = 41/441 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    +   S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQDESPGMVFWHPRGWTLWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F   ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFNHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFNT-LAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  ++ ++    P     + E    A+ G  +   +       +P E         
Sbjct: 407 YKDFGFDNVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVSWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKVEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G    W   +    +++       +   +
Sbjct: 499 EDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAWLAPMQVVVMNIA------ESQAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAQSLAQTLQKQGVRVEADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSN 444
                M ++  I        +
Sbjct: 613 VDLGVMPVDAFIERLRQDVQS 633


>gi|105892737|gb|ABF75902.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Burkholderia
           cenocepacia AU 1054]
 gi|116647586|gb|ABK08227.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Burkholderia
           cenocepacia HI2424]
          Length = 618

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 149/443 (33%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 214 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 271

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 272 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 330

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 331 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFNT-LAMSV 389

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     + E    A+ G      +       +P E         
Sbjct: 390 YKDFGFDHIDIKLSLRPDQRAGTDETWDRAEQGLRDALTACGLTWEELPGE--------- 440

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 441 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEYVA 481

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G   +W        +++       +   +
Sbjct: 482 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVWLAPYQAIVLNIA------ESQAE 535

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 536 YAQSLTQTLQKQGVRVAADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGG 595

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +        + +
Sbjct: 596 VDLGVMPVEAFVERLQEDLRSFK 618


>gi|312134685|ref|YP_004002023.1| threonyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
 gi|311774736|gb|ADQ04223.1| threonyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
          Length = 639

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/449 (21%), Positives = 171/449 (38%), Gaps = 44/449 (9%)

Query: 2   RRSKY--FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   +L +L+E   RD      +L L    I     G   +LP G    + +    R
Sbjct: 227 KKSQLDEYLTMLEEAKKRDHRKLGRELDLFD--IFDEGPGFPFFLPKGMIIRNILEDFWR 284

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  + G  E+  P + + +LW++SG +D Y + M      +D+     P +      ++
Sbjct: 285 EEHKKRGYQEIKTPIMLTKELWIQSGHWDHYKENM-YFTKIDDQEFAIKPMNCPGGILVY 343

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +    SYR LP    ++ L  R EL     G+MR R F   DA+ F L P   K     +
Sbjct: 344 KRKSHSYRELPQRLCELGLVHRHELSGVLHGLMRVRCFTQDDAHIFML-PSQIKDEIKGV 402

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  ++  G K   +   + P     + E   +A++                 +   
Sbjct: 403 IDLIDYFYNVFGFKYH-VELSTRPENSMGTDEQWNMAES-----------------ALKE 444

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             ++I     I E   A Y    D H E   DSL    + +   ++    F    ++   
Sbjct: 445 ALEEIGISYKINEGDGAFYGPKIDFHLE---DSLKRTWQCATIQLD----FQMPERFD-- 495

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G DG  H    +     G++    A++    +  G  +P  +AP ++ +I +  
Sbjct: 496 --LYYIGEDGAKHRPVMLHRVVFGSIERFIAILT---EHFGGAFPVWLAPTQVRVIPVSD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +     +   K+   L + G  V  D   E +G +   A L   P  VIVG K   ++ V
Sbjct: 551 N---FNNYAAKVSQILKENGFRVEEDYRSETVGYKIRDAQLQKIPYMVIVGEKEQKENTV 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G     +++E ++    +    
Sbjct: 608 AVRDRKKGDLGSFTIDEFVSMMKEKVEKK 636


>gi|283797704|ref|ZP_06346857.1| threonine--tRNA ligase [Clostridium sp. M62/1]
 gi|291074600|gb|EFE11964.1| threonine--tRNA ligase [Clostridium sp. M62/1]
          Length = 650

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 156/442 (35%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M+H    G   +LP G +  + +    RE   + G
Sbjct: 238 YITMMEEAKKRDHRKLGKELGLF--MMHDAGPGFPFFLPKGMQLKNTLLDYWREIHKKAG 295

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + +  LW  SG +D Y   M      +++     P +      ++ S  +SY
Sbjct: 296 YVEISTPIILNRSLWETSGHWDHYKNNMYT-TVIDEEDYAIKPMNCPGGVLVYASEPRSY 354

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E   +  G+MR R F   DA+ F    +       K   + +  
Sbjct: 355 RDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMTPEQIKDE--IKGVATLINE 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            + L      +   + P     S E                   +       +  D++  
Sbjct: 413 VYTLFGFKYHVELSTRPEDSMGSDE-----------------DWELATEGLRSALDELGL 455

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H E   D +    +     ++    F    ++       + G
Sbjct: 456 PYVVNEGDGAFYGPKIDFHLE---DCIGRTWQCGTIQLD----FQLPQRF----ELEYTG 504

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++     G    W   +AP ++ ++ I        D
Sbjct: 505 ADGEKHRPIMIHRVVFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPISDK---YAD 558

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+Y  LS+ G     D   E+IG +   A     P  ++VG K   +  V ++ R  
Sbjct: 559 YAAKVYESLSEAGIRAEVDTRSEKIGYKIREAQTNKIPYMLVVGQKEEEEGTVSVRSRFA 618

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G     SLE  I       ++ 
Sbjct: 619 GDEGASSLESFIEKIQKEIASK 640


>gi|167587363|ref|ZP_02379751.1| threonyl-tRNA synthetase [Burkholderia ubonensis Bu]
          Length = 635

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 148/443 (33%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFNT-LAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     + E    A+ G      +       +P E         
Sbjct: 407 YKDFGFDHIDIKLSLRPDQRAGTDETWDRAEQGLRDALTACGLAWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G   +W        +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPVWLAPFQAIVLNIA------ESQAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G     D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAQSLAQTLQKQGVRAAADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +        + +
Sbjct: 613 VDLGVMPVEAFVERLQEDLRSFK 635


>gi|37680129|ref|NP_934738.1| threonyl-tRNA synthetase [Vibrio vulnificus YJ016]
 gi|37198875|dbj|BAC94709.1| threonyl-tRNA synthetase [Vibrio vulnificus YJ016]
          Length = 655

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IRE+    G 
Sbjct: 247 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSVFRDLEVFIREKLTEYGY 304

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 305 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 363

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 364 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQDEVTNCIKMVYDTY 422

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 423 QTFGFDNIAVKLSTRPEQRVGSDE-----------------IWDQSEEALKQALESMDIA 465

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     LFD L    +     ++       G        AT+ G 
Sbjct: 466 YEIQEGEGAFYGPKIEF---TLFDCLGRAWQCGTVQLDFNLPNRLG--------ATYVGE 514

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 515 NNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVIMNIT------DKQADY 568

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++I  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 569 VQEIAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAVRTRKGN 628

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 +++ ++Y   + ++ +
Sbjct: 629 DLGKFKVDDFVSYIQDQIASRK 650


>gi|254785570|ref|YP_003072999.1| threonyl-tRNA synthetase [Teredinibacter turnerae T7901]
 gi|259516754|sp|C5BSQ1|SYT_TERTT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|237684404|gb|ACR11668.1| threonine--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 637

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 147/444 (33%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      K  L    + + + G+  W P G      +   +R+ Q  
Sbjct: 229 KAYLHRLEEAEKRDHRKLGKKFDLF--HLQEEAPGMVFWHPKGWSVYTAIEQYMRKVQRE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG +D +   M  + +   +     P +      +F   +K
Sbjct: 287 NGYKEIKTPQVVDRSLWERSGHWDKFRDGMFTV-ESESRDYAVKPMNCPCHIQVFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +     R+E      G+MR R F   D + F               + Y 
Sbjct: 346 SYRDLPLRFAEFGSCHRNEASGTLQGIMRVRAFTQDDGHIFCAEDAIQSEVSIFTDLLYE 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +   G + + +R  + P     S E                   D    +     +  
Sbjct: 406 V-YRDFGFEDVIIRLSTRPEQRVGSEE-----------------VWDKSEKALADALNAK 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                 +    A Y    +     L D +    +     ++                A F
Sbjct: 448 GLAFEYLPGEGAFYGPKIEF---SLKDCIGRVWQCGTIQVDFSMPARLD--------AQF 496

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG     V +    +G+      ++    +     +P  +AP ++ ++NI  +    
Sbjct: 497 VAEDGSRQVPVMLHRAILGSFERFIGILI---ENYEGAFPPWLAPEQVVVMNITDN---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  EK+   L   G  V  D   E+IG +     +   P  ++VG + + ++ V ++ R
Sbjct: 551 AEYAEKVRNSLQNEGFRVVSDLRNEKIGFKIREHTIQKVPYLLVVGDQEMENNSVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                   S+++     +   +  
Sbjct: 611 EGKDLGTYSVDDFATLLADSVAKR 634


>gi|315181382|gb|ADT88295.1| threonyl-tRNA synthetase [Vibrio furnissii NCTC 11218]
          Length = 642

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR + N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFIRHKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENRDYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEDQIQEEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 410 TTFGFDNIAVKLSTRPEKRVGSDE-----------------IWDKSEEALKHSLEAMGIA 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 453 YEIQEGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPTRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 NNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVVVNIT------DKQADY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 556 AQEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 L++ +++     ++ +
Sbjct: 616 DLGKFKLDDFVSHIQTEIASRK 637


>gi|320156122|ref|YP_004188501.1| threonyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
 gi|319931434|gb|ADV86298.1| threonyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
          Length = 642

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IRE+    G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSVFRDLEVFIREKLAEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQDEVTNCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 410 QTFGFDNIAVKLSTRPEQRVGSDE-----------------IWDQSEEALKQALESMDIA 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     LFD L    +     ++       G        AT+ G 
Sbjct: 453 YEIQEGEGAFYGPKIEF---TLFDCLGRAWQCGTVQLDFNLPNRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 NNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVIMNIT------DKQADY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++I  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 556 VQEIAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAVRTRKGN 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 +++ ++Y   + ++ +
Sbjct: 616 DLGKFKVDDFVSYIQDQIASRK 637


>gi|295092070|emb|CBK78177.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Clostridium cf.
           saccharolyticum K10]
          Length = 650

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 156/442 (35%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M+H    G   +LP G +  + +    RE   + G
Sbjct: 238 YITMMEEAKKRDHRKLGKELGLF--MMHDAGPGFPFFLPKGMQLKNTLLDYWREIHKKAG 295

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + +  LW  SG +D Y   M      +++     P +      ++ S  +SY
Sbjct: 296 YVEISTPIILNRSLWETSGHWDHYKNNMYT-TVIDEEDYAIKPMNCPGGVLVYASEPRSY 354

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E   +  G+MR R F   DA+ F    +       K   + +  
Sbjct: 355 RDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMTPEQIKDE--IKGVATLINQ 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            + L      +   + P     S E                   +       +  D++  
Sbjct: 413 VYTLFGFKYHVELSTRPEDSMGSDE-----------------DWELATEGLRSALDELGL 455

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H E   D +    +     ++    F    ++       + G
Sbjct: 456 PYVVNEGDGAFYGPKIDFHLE---DCIGRTWQCGTIQLD----FQLPQRF----ELEYTG 504

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++     G    W   +AP ++ ++ I        D
Sbjct: 505 ADGEKHRPIMIHRVVFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPISDK---YAD 558

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+Y  LS+ G     D   E+IG +   A     P  ++VG K   +  V ++ R  
Sbjct: 559 YAAKVYESLSEAGIRAEVDTRSEKIGYKIREAQTNKIPYMLVVGQKEEEEGTVSVRSRFA 618

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G     SLE  I       ++ 
Sbjct: 619 GDEGASSLESFIEKIQKEIASK 640


>gi|125973743|ref|YP_001037653.1| threonyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|256005747|ref|ZP_05430701.1| threonyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281417900|ref|ZP_06248920.1| threonyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|166223337|sp|A3DET1|SYT_CLOTH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|125713968|gb|ABN52460.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Clostridium
           thermocellum ATCC 27405]
 gi|255990281|gb|EEU00409.1| threonyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281409302|gb|EFB39560.1| threonyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|316940063|gb|ADU74097.1| threonyl-tRNA synthetase [Clostridium thermocellum DSM 1313]
          Length = 635

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 155/442 (35%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    I++   G   ++P G    + +    REE  + G
Sbjct: 231 YITRIEEAKKRDHRKLGRELDLFD--IYEEGPGFPFFMPKGMVLRNVLEEYWREEHRKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M      ++      P +      +++  + SY
Sbjct: 289 YQEIKTPIILNEELWHRSGHWDHYKENM-YFTKIDEADFAIKPMNCPGGMLVYKRKLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+ F +TP+  +     +       
Sbjct: 348 RDLPQRLAELGLVHRHELSGVLHGLMRVRCFTQDDAHIF-MTPDQIESEILGVISLIDDF 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K   +   + P     S E                   +    +     +    
Sbjct: 407 YKVFGFKYH-VELSTRPENSMGSDE-----------------DWERATNALKNALEKKGI 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H E              R  + G I     +       T+ G
Sbjct: 449 DYKINEGDGAFYGPKIDFHLED----------SIGRTWQCGTI-QLDFQMPERFDLTYIG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++    A++   + G   +W   V    + ++      +   D
Sbjct: 498 PDGEKHRPVMIHRVVFGSIERFIAILTEHYAGAFPVWLSPVQVKILPIL------EKQHD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G  V  D   E+IG +   A L   P  +++G K + +  V ++ R  
Sbjct: 552 YVAEVKKALEEKGVRVEADLRNEKIGYKIREAQLEKVPYMLVIGDKEMENRTVAVRSRKD 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M LE+ +N       N 
Sbjct: 612 GDLGPMRLEDFVNRIVEAIKNK 633


>gi|330445795|ref|ZP_08309447.1| threonyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489986|dbj|GAA03944.1| threonyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 643

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G      +   +RE+ N    
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFVREKLNEYDY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEAQVQQEVTSCIEMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P                      S    D       T  + +   
Sbjct: 410 KTFGFDNIVVKLSTRPEKR-----------------VGSDAMWDKAESDLVTALESMNIP 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L D L    +     ++       G        AT+ G 
Sbjct: 453 FEIQEGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFALPERLG--------ATYVGE 501

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D + H    +    +G++     ++   + G    W        +++           + 
Sbjct: 502 DNERHTPVMIHRAILGSLERFIGILIEDYAGFFPTWLAPQQAVVMNIT------DAQSEY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++I  +L K G  V  D   E+IG +     L   P  ++ G K V    V ++ R   
Sbjct: 556 VQEIVEKLKKCGIRVNADLRNEKIGFKIREHTLKRVPFMLVCGDKEVEAGVVAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 ++E++ +     S+ +
Sbjct: 616 DLGKFKIDELVAFMQEEISSRK 637


>gi|312622904|ref|YP_004024517.1| threonyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203371|gb|ADQ46698.1| threonyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 639

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/449 (22%), Positives = 169/449 (37%), Gaps = 44/449 (9%)

Query: 2   RRSKY--FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   +L +L+E   RD      +L L    I +   G   +LP G    + +    R
Sbjct: 227 KKSQLDEYLTMLEEAKKRDHRKLGRELDLFD--IFEEGPGFPFFLPKGMIIRNILEDFWR 284

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  + G  E+  P + + DLWV+SG +D Y   M      +D+     P +      ++
Sbjct: 285 EEHKKRGYQEIKTPIMLTKDLWVQSGHWDHYKGNM-YFTKIDDQEFAIKPMNCPGSILVY 343

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +    SYR LP    ++ L  R EL     G+MR R F   DA+ F L P   K     +
Sbjct: 344 KRKSHSYRELPERLCELGLVHRHELSGVLHGLMRVRCFTQDDAHIFML-PSQIKDEIKGV 402

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G K   +   + P     + E   +A+T                 +   
Sbjct: 403 IDLIDYFYSVFGFKYH-VELSTRPENSMGTDEQWNMAET-----------------ALKE 444

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +++     I E   A Y    D H E   DSL    + +   ++    F    ++   
Sbjct: 445 ALEEVGIDYKINEGDGAFYGPKIDFHLE---DSLKRTWQCATIQLD----FQMPERFD-- 495

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G DG  H    +     G++    A++    +     +P  +AP +I +I +  
Sbjct: 496 --LYYIGEDGAKHRPVMLHRVVFGSIERFIAILT---EHFAGAFPVWLAPTQIRIIPVSD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +     D   KI   L + G  V  D   E +G +   A L   P  VIVG K   D+ +
Sbjct: 551 N---FNDYAAKISQILKENGFRVEEDFRSETVGYKIRDAQLQKIPYMVIVGEKEQRDNTI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G     +++E ++    +    
Sbjct: 608 AVRDRKKGDLGSFTIDEFVSMVKDKVEKK 636


>gi|258515613|ref|YP_003191835.1| threonyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779318|gb|ACV63212.1| threonyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
          Length = 634

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/440 (20%), Positives = 150/440 (34%), Gaps = 41/440 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L + M  +   G   + P G    + +    R+E  + G  E
Sbjct: 234 RIEEAKRRDHRKLGAELELFSVM--EEGPGFPFFHPKGMILRNELEKFWRQEHEKRGYQE 291

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + +  LW +SG +D Y + M      ++      P +      I++S + SYR  
Sbjct: 292 IRTPIILNRVLWEQSGHWDHYKENM-YFTQIDNFDFAVKPMNCPGSMLIYKSKLHSYREF 350

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    ++ L  R EL     G+MR R F   DA+ F L P   K     +       +  
Sbjct: 351 PIRMGELGLVHRHELSGVLHGLMRVRCFTQDDAHIFML-PGQVKDEIIGVIDLVDDFYSI 409

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G K                    V   T   +   S +  D    +     +       
Sbjct: 410 FGFKY------------------HVELSTKPEKAMGSDEVWDMATNTLKEAIEAKGLDYK 451

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           + E   A Y    D H E              R  + G I             ++ G DG
Sbjct: 452 VNEGDGAFYGPKIDFHLED----------CLGRTWQCGTI-QLDFLMPEKFDLSYVGEDG 500

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H    +     G++     ++     G    W   +AP ++ ++ I        D   
Sbjct: 501 QKHRPVMLHRVVFGSIERFIGILTEHFAGAFPTW---LAPVQVRVLPITDR---QSDYAV 554

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++  RL + G  V  D   E+IG +   A     P  +++G K +    V I+HR  G  
Sbjct: 555 RVVDRLKETGIRVELDQRNEKIGYKIREAQTQKIPYMLVIGDKELEKELVAIRHRSQGDL 614

Query: 427 EDMSLEEVINYASHRFSNNR 446
              +LE+ I+       + +
Sbjct: 615 GISTLEDFIDKLQEEIRDKK 634


>gi|323499329|ref|ZP_08104306.1| threonyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
 gi|323315717|gb|EGA68751.1| threonyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
          Length = 642

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 137/443 (30%), Gaps = 42/443 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR + +  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFIRAKLDEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQEEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 410 QTFGFDNIVVKLSTRPEKRVGSDE-----------------IWDQSEEALKQSLEAMNIE 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             + E   A Y    +     L D L    +     ++       G        A++   
Sbjct: 453 YELQEGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFNLPGRLG--------ASYVDE 501

Query: 306 DGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           + +     M    I     R +  +IE              A                 D
Sbjct: 502 NNERQVPVMIHRAILGSLERFIGILIEEYFGFFPTWLSPEQAVIMNIT-------DKQSD 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L KVG     D   E+IG +     L   P  ++ G + +   ++ ++ R  
Sbjct: 555 YAQEVAQKLQKVGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKG 614

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                  +++ I+Y     S  +
Sbjct: 615 KDLGKFKVDDFISYIQDEISTRK 637


>gi|260770313|ref|ZP_05879246.1| threonyl-tRNA synthetase [Vibrio furnissii CIP 102972]
 gi|260615651|gb|EEX40837.1| threonyl-tRNA synthetase [Vibrio furnissii CIP 102972]
          Length = 642

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR + N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFIRHKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENRDYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEDQIQEEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 410 TTFGFDNIAVKLSTRPEKRVGSDE-----------------IWDKSEEALKHSLEAMGIA 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 453 YEIQEGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPSRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 NNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVVVNIT------DKQADY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 556 AQEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 L++ +++     ++ +
Sbjct: 616 DLGKFKLDDFVSHIQTEIASRK 637


>gi|147671507|ref|YP_001215778.1| threonyl-tRNA synthetase [Vibrio cholerae O395]
 gi|262168212|ref|ZP_06035910.1| threonyl-tRNA synthetase [Vibrio cholerae RC27]
 gi|172047342|sp|A5EZ18|SYT_VIBC3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146313890|gb|ABQ18430.1| threonyl-tRNA synthetase [Vibrio cholerae O395]
 gi|227014955|gb|ACP11164.1| threonyl-tRNA synthetase [Vibrio cholerae O395]
 gi|262023455|gb|EEY42158.1| threonyl-tRNA synthetase [Vibrio cholerae RC27]
          Length = 642

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G      +   IR + N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSVFRELEIFIRHKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E     D  E  +  S   MD P   +          
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIW---DKSEQALIDSLKAMDIPFEIQ---------- 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 457 ----EGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPTRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 SNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVVVNIT------DKQADY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 556 AHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 L++ I +     ++ +
Sbjct: 616 DLGKFKLDDFIAHIQAEIASRK 637


>gi|261250893|ref|ZP_05943467.1| threonyl-tRNA synthetase [Vibrio orientalis CIP 102891]
 gi|260937766|gb|EEX93754.1| threonyl-tRNA synthetase [Vibrio orientalis CIP 102891]
          Length = 642

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 139/443 (31%), Gaps = 42/443 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   +RE+    G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFVREKLTEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y + M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLIMDRVLWERSGHWDKYAEAMFT-TSSENREYALKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQEEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 410 QTFGFDNIVVKLSTRPEKRVGSDE-----------------IWDQSEEALKQSLEAMDIA 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L D L    +     ++       G        AT+   
Sbjct: 453 YEIQEGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFNLPGRLG--------ATYVDE 501

Query: 306 DGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           + +     M    I     R +  +IE  +           A                 D
Sbjct: 502 NNERQTPVMIHRAILGSLERFIGILIEEYYGFFPTWLSPEQAVIMNIT-------DKQSD 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R  
Sbjct: 555 YVQEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAVRTRKG 614

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                  +++ I+Y     S+ +
Sbjct: 615 KDLGKFKVDDFISYIQDEISSRK 637


>gi|262394487|ref|YP_003286341.1| threonyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262338081|gb|ACY51876.1| threonyl-tRNA synthetase [Vibrio sp. Ex25]
          Length = 642

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR + +  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFIRAKLDEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQEEVTNCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 410 QTFGFDNIVVKLSTRPEKRVGSDE-----------------IWDQSEEALKQSLESMDIP 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 453 YEIQEGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPGRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + +    V +    +G++     ++   + G    W        +++             
Sbjct: 502 NNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVLMNIT------DKQSGY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++I  +L K G     D   E+IG +     L   P  ++VG + +   ++ ++ R   
Sbjct: 556 VQEIVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 +++ I Y     S+ +
Sbjct: 616 DLGKFKVDDFIAYIQDEISSRK 637


>gi|121591402|ref|ZP_01678683.1| threonyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121546739|gb|EAX56913.1| threonyl-tRNA synthetase [Vibrio cholerae 2740-80]
          Length = 642

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 148/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E     D  E  +  S   MD P   +          
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIW---DKSEQALIDSLKAMDIPFEVQ---------- 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 457 ----EGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPTRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 SNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVVVNIT------DKQADY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 556 AHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 L++ I +     ++ +
Sbjct: 616 DLGKFKLDDFIAHIQAEIASRK 637


>gi|289163681|ref|YP_003453819.1| Threonyl tRNA synthetase [Legionella longbeachae NSW150]
 gi|288856854|emb|CBJ10665.1| Threonyl tRNA synthetase [Legionella longbeachae NSW150]
          Length = 639

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 138/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L        + G+  W P G      +   +R      G
Sbjct: 231 YLFRLEEAEKRDHRKLGKSLELF--HFQDIAPGMVFWHPKGWTIYQELERYMRHRLADFG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW +SG + ++  EM  + +  ++     P +      +F   +KSY
Sbjct: 289 YQEIRTPQLVDRVLWEKSGHWANFRDEMF-VTETENRHYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +     R E      G+MR R  +  DA+ F    +        M      +
Sbjct: 348 RDLPLRFSEFGNCHRCEPSGSLHGLMRVRNMVQDDAHIFCTEDQIQSE-VAMMLELVQSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  R    P     S E                   D    +      +   
Sbjct: 407 YTDFGFNEIKYRLALRPEKRVGSDE-----------------VWDKAEAALKQAMKERNI 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++                A +  
Sbjct: 450 EWVDAPGEGAFYGPKIEC---SLSDCLGRIWQCGTIQVDFSMPGRLD--------AIYIA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +    +G+      ++   + GK  +W   V    +++       +   +
Sbjct: 499 EDGSKQTPVMLHRAILGSFERFMGILIEHYAGKLPLWLSPVQAIIMTI------SEKQSE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+   L K G    +D   E+IG +     L   P  +++G K V   +V ++ R  
Sbjct: 553 YAEKVTQILQKNGIRANFDLRNEKIGFKIREHTLQKIPYLLVIGDKEVESGQVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M+++ + +      ++ 
Sbjct: 613 TDLGVMTIDTICDTLMQEIAHK 634


>gi|296163127|ref|ZP_06845898.1| threonyl-tRNA synthetase [Burkholderia sp. Ch1-1]
 gi|295886629|gb|EFG66476.1| threonyl-tRNA synthetase [Burkholderia sp. Ch1-1]
          Length = 635

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 149/443 (33%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    +   S G+  W P G      V   +R   N 
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HMQDESPGMVFWHPRGWTLWQQVEQYMRRRVND 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW  SG + +Y + M    +   +     P +      +F   ++
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S        +
Sbjct: 346 SYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFNT-LAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G  ++ ++    P     + E    A+ G  +   +       +P E       
Sbjct: 405 SVYKDFGFDNVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   + D+L  + +     +++      G        A +
Sbjct: 458 ----------GAFYGPKVEYH---IRDALGRSWQCGTLQLDMVLPERLG--------AEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G+M     ++   H G    W   +    +++       +  
Sbjct: 497 VAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAWLAPMQVVVMNIA------ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 TEYAQSLAQSLQKQGVRVEADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  M L+  I        +
Sbjct: 611 GGVDLGVMPLDTFIERLRQDVQS 633


>gi|15601053|ref|NP_232683.1| threonyl-tRNA synthetase [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|153817556|ref|ZP_01970223.1| threonyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|227811910|ref|YP_002811920.1| threonyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229506559|ref|ZP_04396068.1| threonyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229510645|ref|ZP_04400125.1| threonyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229517224|ref|ZP_04406669.1| threonyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229606038|ref|YP_002876742.1| threonyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254850514|ref|ZP_05239864.1| threonyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255745914|ref|ZP_05419861.1| threonyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262163529|ref|ZP_06031275.1| threonyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|298500133|ref|ZP_07009939.1| threonyl-tRNA synthetase [Vibrio cholerae MAK 757]
 gi|22654144|sp|Q9KMN7|SYT_VIBCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783545|sp|C3LUV8|SYT_VIBCM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|9657684|gb|AAF96196.1| threonyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126511981|gb|EAZ74575.1| threonyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|227011052|gb|ACP07263.1| threonyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229345260|gb|EEO10233.1| threonyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229353090|gb|EEO18030.1| threonyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229356910|gb|EEO21828.1| threonyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229372524|gb|ACQ62946.1| threonyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254846219|gb|EET24633.1| threonyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255735668|gb|EET91066.1| threonyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262028096|gb|EEY46755.1| threonyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|297542114|gb|EFH78165.1| threonyl-tRNA synthetase [Vibrio cholerae MAK 757]
          Length = 642

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 148/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E     D  E  +  S   MD P   +          
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIW---DKSEQALIDSLKAMDIPFEIQ---------- 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 457 ----EGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPTRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 SNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVVVNIT------DKQADY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 556 AHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 L++ I +     ++ +
Sbjct: 616 DLGKFKLDDFIAHIQAEIASRK 637


>gi|153827549|ref|ZP_01980216.1| threonyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|153829051|ref|ZP_01981718.1| threonyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|229514759|ref|ZP_04404220.1| threonyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|229522960|ref|ZP_04412374.1| threonyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|229526102|ref|ZP_04415506.1| threonyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229527753|ref|ZP_04417144.1| threonyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|254284959|ref|ZP_04959925.1| threonyl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|148875480|gb|EDL73615.1| threonyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|149738482|gb|EDM52878.1| threonyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|150424962|gb|EDN16739.1| threonyl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|229334115|gb|EEN99600.1| threonyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|229336260|gb|EEO01278.1| threonyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229340177|gb|EEO05185.1| threonyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|229348739|gb|EEO13697.1| threonyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|327485485|gb|AEA79891.1| Threonyl-tRNA synthetase [Vibrio cholerae LMA3894-4]
 gi|327485490|gb|AEA79896.1| Threonyl-tRNA synthetase [Vibrio cholerae LMA3894-4]
          Length = 642

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 148/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E     D  E  +  S   MD P   +          
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIW---DKSEQALIDSLKAMDIPFEIQ---------- 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 457 ----EGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPTRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 SNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVVVNIT------DKQADY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 556 AHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 L++ I +     ++ +
Sbjct: 616 DLGKFKLDDFIAHIQAEIASRK 637


>gi|307730402|ref|YP_003907626.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1003]
 gi|307584937|gb|ADN58335.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1003]
          Length = 635

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 151/442 (34%), Gaps = 39/442 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    +   S G+  W P G      V   +R   N 
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HMQDESPGMVFWHPRGWTLWQQVEQYMRRRVNE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW  SG + +Y + M    +   +     P +      +F   ++
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S        +
Sbjct: 346 SYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEEQFISESIAFNT-LAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G  ++ ++    P     + E    A+ G  +   +       +P E       
Sbjct: 405 SVYKDFGFDNVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   + D+L  + +     +++      G +Y        
Sbjct: 458 ----------GAFYGPKVEYH---IKDALGRSWQCGTLQLDMVLPERLGAEY-------V 497

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              +G+   + +    +G+M     ++   H G    W   +    +++       +   
Sbjct: 498 AEDNGRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAWLAPMQVVVMNIA------ENQA 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R 
Sbjct: 552 EYAQSLAQSLQKQGVRVEADLRNEKISYKIRQHTLEKVPYLLVVGDKEREAQTVAVRARG 611

Query: 423 TGIREDMSLEEVINYASHRFSN 444
                 M +   I        +
Sbjct: 612 GVDLGVMPVGAFIERLRQDVQS 633


>gi|295115128|emb|CBL35975.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase
           [butyrate-producing bacterium SM4/1]
          Length = 605

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 156/442 (35%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M+H    G   +LP G +  + +    RE   + G
Sbjct: 193 YITMMEEAKKRDHRKLGKELGLF--MMHDAGPGFPFFLPKGMQLKNTLLDYWREIHKKAG 250

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + +  LW  SG +D Y   M      +++     P +      ++ S  +SY
Sbjct: 251 YVEISTPIILNRSLWETSGHWDHYKNNMYT-TVIDEEDYAIKPMNCPGGVLVYASEPRSY 309

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E   +  G+MR R F   DA+ F    +       K   + +  
Sbjct: 310 RDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMTPEQIKDE--IKGVATLINE 367

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            + L      +   + P     S E                   +       +  D++  
Sbjct: 368 VYTLFGFKYHVELSTRPEDSMGSDE-----------------DWELATEGLRSALDELGL 410

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H E   D +    +     ++    F    ++       + G
Sbjct: 411 PYVVNEGDGAFYGPKIDFHLE---DCIGRTWQCGTIQLD----FQLPQRF----ELEYTG 459

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++     G    W   +AP ++ ++ I        D
Sbjct: 460 ADGEKHRPIMIHRVVFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPISDK---YAD 513

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+Y  LS+ G     D   E+IG +   A     P  ++VG K   +  V ++ R  
Sbjct: 514 YAAKVYESLSEAGIRAEVDTRSEKIGYKIREAQTNKIPYMLVVGQKEEEEGTVSVRSRFA 573

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G     SLE  I       ++ 
Sbjct: 574 GDEGASSLESFIEKIQKEIASK 595


>gi|187929057|ref|YP_001899544.1| threonyl-tRNA synthetase [Ralstonia pickettii 12J]
 gi|238691850|sp|B2UGJ8|SYT_RALPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187725947|gb|ACD27112.1| threonyl-tRNA synthetase [Ralstonia pickettii 12J]
          Length = 635

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 147/442 (33%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I ++S G   W P G      +   +R      G
Sbjct: 231 YLHMLEEAEKRDHRKLGRELDLF--HIDEYSPGTVFWHPKGWTLWQEIEQYMRRVYRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D Y + M  + +   +     P +      I++  IKSY
Sbjct: 289 YQEVKGPQILDKTLWEKTGHWDKYRENMF-ITESEKREYALKPMNCPGHILIYKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +     R+E      G+MR R F   D + F  T +  +           ++
Sbjct: 348 RDLPLRFGEFGACHRNEPSGGLHGIMRVRGFTQDDGHIFC-TEDMIQAEVTAFTTLLQKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  +  + P     + E                   D    +          
Sbjct: 407 YKDFGFTEILYKLSTRPDKRIGTEE-----------------SWDRAEAALAEGLRASGC 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    +     L D+L    +     ++              + A F G
Sbjct: 450 EFEYLPGEGAFYGPKIEY---VLKDALGRQWQCGTIQVDPNLP--------ERLDAEFVG 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG  H    +    +G++     ++   + G    W   V    +S+           +
Sbjct: 499 EDGARHRPIMLHRAIVGSLERFIGILIEQYAGALPTWLSPVQVVVLSIT------DSHAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G     D   E+IG +     +   P QV+VG K   +++V ++ R  
Sbjct: 553 YAQSVAQSLQKQGFRAVVDLRNEKIGYKIREHSVQKVPYQVVVGDKERDENQVAVRARGN 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M L   +    +  +N 
Sbjct: 613 VDLGSMPLSAFVERLKNDLANK 634


>gi|146295981|ref|YP_001179752.1| threonyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409557|gb|ABP66561.1| Ser-tRNA(Thr) hydrolase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 639

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 97/449 (21%), Positives = 170/449 (37%), Gaps = 44/449 (9%)

Query: 2   RRSKY--FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   +L +L+E  R D      +L L    I +   G   +LP G    + +    R
Sbjct: 227 KKSQLDEYLTMLEEAKRRDHRKLGRELDLFD--IFEQGPGFPFFLPKGMIIRNILEDFWR 284

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  + G  E+  P + + DLWV+SG +D Y + M      +D+     P +      ++
Sbjct: 285 EEHKKRGYQEIKTPIMLTKDLWVQSGHWDHYKENM-YFTKIDDQEFAIKPMNCPGSILVY 343

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +    SYR LP    ++ L  R EL     G+MR R F   DA+ F L P   K     +
Sbjct: 344 KRKSHSYRELPERLCELGLVHRHELSGVLHGLMRVRCFTQDDAHIFML-PSQIKDEIKGV 402

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G K   +   + P     + E   +A+T                 +   
Sbjct: 403 IDLIDYFYSVFGFKYH-VELSTRPENSMGTDEQWNMAET-----------------ALKE 444

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +++     I E   A Y    D H E   DSL    + +   ++    F    ++   
Sbjct: 445 ALEEVGINYKINEGDGAFYGPKIDFHLE---DSLKRTWQCATIQLD----FQMPERFD-- 495

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G DG  H    +     G++    A++    +     +P  +AP +I +I +  
Sbjct: 496 --LYYIGEDGAKHRPVMLHRVVFGSIERFIAILT---EHFAGAFPVWLAPIQIRVIPVSD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +     D   KI   L + G  V  D   E +G +   A L   P  VIVG K   ++ +
Sbjct: 551 N---FNDYAAKISQTLKENGFRVEEDFRSETVGYKIRDAQLQKIPYMVIVGEKERRENTI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G     ++++ ++    +    
Sbjct: 608 AVRDRKKGDLGSFTIDKFVSMVKEKVEKK 636


>gi|255659698|ref|ZP_05405107.1| threonine--tRNA ligase [Mitsuokella multacida DSM 20544]
 gi|260848272|gb|EEX68279.1| threonine--tRNA ligase [Mitsuokella multacida DSM 20544]
          Length = 639

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 162/442 (36%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    R+   R G
Sbjct: 233 YLHMLEEAKKRDHRKLGKQLDLFS--LHEEGPGFPFFHPNGMIVRNELINYWRDVHRRYG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +D Y + M      + +     P +      ++ S   SY
Sbjct: 291 YQEIKTPIILNRQLWETSGHWDHYKENM-YFTKIDGEDYAIKPMNCPGGMLVYNSKQHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E      G+ R R F   DA+   +TP+  +         +  +
Sbjct: 350 RDLPLRLGELGLVHRHEKSGELHGLFRVRNFTQDDAH-LFVTPDQVEQEIQHTIDLFDEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           ++  GL  +     + P     + E                   +          +    
Sbjct: 409 YNTFGLTYV-AELSTRPDDSMGTDE-----------------DWELATNGLRKALEHRGL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+        R  + G I  +  +     + T+ G
Sbjct: 451 DYIVNEGDGAFYGPKIDFH---LKDSIG-------RTWQCGTI-QYDMQMPEKFNLTYVG 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++    +     +P  +AP +  ++ I        D
Sbjct: 500 EDGEKHRPIMLHRVVYGSIERFIGILI---ENYAGAFPTWLAPVQARILPITDK---QAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  ++  +G  +  DD  E+IG +   + +L  P  ++VG + ++D  V ++    
Sbjct: 554 YAYELRKKMFDLGLRIEVDDRSEKIGKKIRESQMLKTPYSLVVGDQEMADGTVAVRKYGE 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              E M +E+ I Y   + +  
Sbjct: 614 QQSETMKVEDFIAYLQEQIATK 635


>gi|297579610|ref|ZP_06941537.1| threonyl-tRNA synthetase [Vibrio cholerae RC385]
 gi|297535256|gb|EFH74090.1| threonyl-tRNA synthetase [Vibrio cholerae RC385]
          Length = 642

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 148/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E     D  E  +  S   MD P   +          
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIW---DKSEQALIDSLKAMDIPFEIQ---------- 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 457 ----EGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPTRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 SNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAIVVNIT------DKQADY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 556 AHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 L++ I +     ++ +
Sbjct: 616 DLGKFKLDDFIAHIQAEIASRK 637


>gi|163801061|ref|ZP_02194961.1| threonyl-tRNA synthetase [Vibrio sp. AND4]
 gi|159175410|gb|EDP60207.1| threonyl-tRNA synthetase [Vibrio sp. AND4]
          Length = 642

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   +R + +  G 
Sbjct: 234 LTRLEEAAKRDHRKLGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFVRSKLDEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLIMDRVLWERSGHWDKYADAMFT-TASENREYALKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQEEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 410 QTFGFDNIVVKLSTRPEQRVGSDE-----------------IWDQSEEALKQSLESMEIP 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 453 YEIQEGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPGRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 NNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAILMNIT------DKQSDY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L K G     D   E+IG +     L   P  ++VG + +   ++ ++ R   
Sbjct: 556 VQEVVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 +++ I Y      + +
Sbjct: 616 DLGKFKVDDFIAYIQDEIFSRK 637


>gi|306820889|ref|ZP_07454509.1| threonine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551003|gb|EFM38974.1| threonine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 641

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 164/443 (37%), Gaps = 42/443 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    REE  + G
Sbjct: 231 YLKLLEEAKLRDHRKLGKELDLFS--MHEEGPGFPFFHPKGMVLRNTLEKFWREEHEKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG +D Y + M      + +     P +       +++H+ SY
Sbjct: 289 YDEIKTPIILNEALWHQSGHWDHYKENM-YFTKIDGEDYAIKPMNCPGSILTYKTHLFSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + ++    R EL     G+MR R F   DA+ + L  +        + ++    
Sbjct: 348 RDLPLRWAEMGQVHRHELSGALHGLMRVRTFTQDDAHLYVLPSQVKDELIGVIELA---- 403

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                            I    + ++ V   T       +++  D          ++   
Sbjct: 404 ---------------DYIYSIFNFKYHVELSTRPENSMGTQEQWDIATNGLIAALEEKNI 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L D++    +     ++    F    ++ +     +  
Sbjct: 449 KYIVNEGDGAFYGPKIDFH---LQDAIGRTWQCGTIQLD----FQMPERFDIH----YID 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ++ +      +     G++     ++    +     +P  ++P ++ ++ I        D
Sbjct: 498 SNNEKQRPVMLHRTVFGSIERFIGILI---EHFAGKFPLWLSPVQVKILPISDK---FID 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ + L K+G  V  D   E+IG +   A L   P  +++G K V ++ + ++ R  
Sbjct: 552 YAYEVQSELKKLGIRVNVDARAEKIGFKIREAQLEKVPYMLVIGEKEVENNTLSVRSRDL 611

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
           G    M  EEVI          +
Sbjct: 612 GDLGSMKKEEVIEKFVKEIEEKK 634


>gi|269102906|ref|ZP_06155603.1| threonyl-tRNA synthetase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162804|gb|EEZ41300.1| threonyl-tRNA synthetase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 643

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 150/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G      +   +RE+ N+   
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFVREKLNQYDY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TESQVQQEVTSCIEMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S     + D  E  +  + + MD P   +          
Sbjct: 410 KTFGFENIVVKLSTRPEKRVGSD---AMWDKAEADLVTALESMDIPFEIQ---------- 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    +     L D L    +     ++       G        AT+ G 
Sbjct: 457 ----EGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFALPERLG--------ATYVGE 501

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D + H    +    +G++     ++   + G    W        +++           + 
Sbjct: 502 DNERHTPVMIHRAILGSLERFIGILIEDYAGFFPTWLAPQQAVVMNIT------DSQSEY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++I  +L K G  V  D   E+IG +     L   P  ++ G + V   +V ++ R   
Sbjct: 556 VQEIVEKLKKCGIRVNADLRNEKIGFKIREHTLKRVPYMLVCGDQEVEAGEVAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 +++++ Y     S+ +
Sbjct: 616 DLGKFKIDDLVAYMQQEISSRK 637


>gi|295677048|ref|YP_003605572.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1002]
 gi|295436891|gb|ADG16061.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1002]
          Length = 635

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 149/443 (33%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    +   S G+  W P G      V   +R   N 
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HMQDESPGMVFWHPRGWTLWQQVEQYMRRRVND 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW  SG + +Y + M    +   +     P +      +F   ++
Sbjct: 287 AGYLEIKTPLIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S        +
Sbjct: 346 SYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFIGESIAFNT-LAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G  ++ ++    P     + E    A+ G  +   +       +P E       
Sbjct: 405 SVYRDFGFDNVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   + D+L  + +     +++      G        A +
Sbjct: 458 ----------GAFYGPKVEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G+M     ++   H G    W   +    +++       +  
Sbjct: 497 VAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAWLAPMQVVVMNIA------ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 AEYAQSLAQSLQKQGVRVEADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  M ++  I        +
Sbjct: 611 GGVDMGVMPVDAFIERLRQDVQS 633


>gi|270158051|ref|ZP_06186708.1| threonyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|269990076|gb|EEZ96330.1| threonyl-tRNA synthetase [Legionella longbeachae D-4968]
          Length = 639

 Score =  273 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 138/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L        + G+  W P G      +   +R      G
Sbjct: 231 YLFRLEEAEKRDHRKLGKSLELF--HFQDIAPGMVFWHPKGWTIYQELERYMRHRLADFG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW +SG + ++  EM  + +  ++     P +      +F   +KSY
Sbjct: 289 YQEIRTPQLVDRVLWEKSGHWANFRDEMF-VTETENRHYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +     R E      G+MR R  +  DA+ F    +        M      +
Sbjct: 348 RDLPLRFSEFGNCHRCEPSGSLHGLMRVRNMVQDDAHIFCTEDQIQSE-VAMMLELVQSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  R    P     S E                   D    +      +   
Sbjct: 407 YTDFGFNEIKYRLALRPEKRVGSDE-----------------VWDKAEAALKQAMKERNI 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++                A +  
Sbjct: 450 EWVDAPGEGAFYGPKIEC---SLSDCLGRIWQCGTIQVDFSMPGRLD--------AIYIA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +    +G+      ++   + GK  +W   V    +++       +   +
Sbjct: 499 EDGSKQTPVMLHRAILGSFERFMGILIEHYAGKLPLWLSPVQAIIMTI------SEKQSE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+   L K G    +D   E+IG +     L   P  +++G K V   +V ++ R  
Sbjct: 553 YAEKVTQILQKNGIRANFDLRNEKIGFKIREHTLQKIPYLLVIGDKEVESGQVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M+++ + +      ++ 
Sbjct: 613 TDLGLMTIDTICDTLMQEIAHK 634


>gi|83590594|ref|YP_430603.1| threonyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
 gi|83573508|gb|ABC20060.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Moorella
           thermoacetica ATCC 39073]
          Length = 633

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 162/442 (36%), Gaps = 42/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      +L + +  +H+   G   +   G    + +    REE  R G
Sbjct: 230 YLHRLEEARKRDHRRLGAQLGIFS--LHEEGPGFPFFHHKGMIIRNELEQFWREEHRRAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P + S  LW +SG +D Y + M      +       P +      ++++   SY
Sbjct: 288 YLEIRTPVILSRTLWEQSGHWDHYRENM-YFTKIDGADYAIKPMNCPGAILVYKTEQHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E      G+MR R F   D++ F L  + +      +     R 
Sbjct: 347 RDLPLRLAELGLVHRHEKSGVLHGLMRVRAFTQDDSHIFMLPSQIASE-IQGVIDLVDRF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           ++  G K   +   + P     S E                   +    +     +    
Sbjct: 406 YNLFGFKY-HVELSTRPDNAMGSEE-----------------IWETATSALRQALEAKGM 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             ++ E   A Y    D H E   DSL    +     ++    F    K+      T+ G
Sbjct: 448 PYAVNEGDGAFYGPKIDFHLE---DSLGRTWQCGTIQLD----FLMPEKFD----LTYIG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++    +  G  +P  +AP ++ ++ I        D
Sbjct: 497 EDGQKHRPVMIHRVVFGSIERFIGILI---EHYGGSFPVWLAPVQVRVLPITDRH---ND 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+ A L + G     +D  ++IG +   A +   P  ++VG K  ++  V ++ R  
Sbjct: 551 YAFKVRAELIRAGIRAEVNDRNDKIGYKIRAAQMEHIPYMLVVGDKEAAEGTVAVRERQA 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    + L E I   +   S  
Sbjct: 611 GDTGRVPLAEFIARVTREISRR 632


>gi|323493467|ref|ZP_08098589.1| threonyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
 gi|323312290|gb|EGA65432.1| threonyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
          Length = 642

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 139/443 (31%), Gaps = 42/443 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   +RE+    G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFVREKLTEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y + M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLIMDRVLWERSGHWDKYAEAMFT-TSSENRDYALKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQDEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 410 QTFGFDNIVVKLSTRPEKRVGSDE-----------------IWDQSEEALKQSLEAMDIP 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L D L    +     ++       G        AT+   
Sbjct: 453 YEIQEGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFNLPGRLG--------ATYVDE 501

Query: 306 DGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           + +     M    I     R +  +IE  +           A                 D
Sbjct: 502 NNERQVPVMIHRAILGSLERFIGILIEEYYGFFPTWLSPEQAVIMNIT-------DKQSD 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R  
Sbjct: 555 YVQEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAVRTRKG 614

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                  +++ I+Y     S+ +
Sbjct: 615 KDLGKFKVDDFISYIQDEISSRK 637


>gi|209516675|ref|ZP_03265528.1| threonyl-tRNA synthetase [Burkholderia sp. H160]
 gi|209502950|gb|EEA02953.1| threonyl-tRNA synthetase [Burkholderia sp. H160]
          Length = 635

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 149/443 (33%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    +   S G+  W P G      V   +R   N 
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HMQDESPGMVFWHPRGWTLWQQVEQYMRRRVND 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW  SG + +Y + M    +   +     P +      +F   ++
Sbjct: 287 AGYLEIKTPLIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S        +
Sbjct: 346 SYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFNT-LAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G  ++ ++    P     + E    A+ G  +   +       +P E       
Sbjct: 405 SVYRDFGFDNVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   + D+L  + +     +++      G        A +
Sbjct: 458 ----------GAFYGPKVEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G+M     ++   H G    W   +    +++       +  
Sbjct: 497 VAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAWLAPMQVVVMNIA------ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 AEYAQLLAQSLQKQGVRVEADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  M ++  I        +
Sbjct: 611 GGVDLGVMPVDTFIERLRQDVQS 633


>gi|152996610|ref|YP_001341445.1| threonyl-tRNA synthetase [Marinomonas sp. MWYL1]
 gi|189083612|sp|A6VYI1|SYT_MARMS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150837534|gb|ABR71510.1| threonyl-tRNA synthetase [Marinomonas sp. MWYL1]
          Length = 645

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      KL L    + + + G+  W P G +    V   +R++Q    
Sbjct: 232 YLTRIEEAEKRDHRKLGKKLDLF--HVQEEAPGMVFWHPKGWRLYQAVEQYMRQKQLDNN 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +  Y + M       ++     P +      ++   +KSY
Sbjct: 290 YQEVKTPQIVDRVLWEKSGHWGKYHENMFT-THSENRDYAVKPMNCPCHIQVYNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LPF   +     R+E      G+MR R F+  D + F  T    +   ++       +
Sbjct: 349 RDLPFRMAEFGSCHRNEPSGALHGIMRVRNFVQDDGHIFV-TEGQIQQEVSEFIDLLHEV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +I  R  + P     S E                   D    + +   D    
Sbjct: 408 YADFGFDNIVYRLSTRPEQRVGSDE-----------------VWDKAEKALSEALDSAGL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    +     L D++    +     ++       G        A +  
Sbjct: 451 DWEELPGEGAFYGPKIEF---SLKDAIGRVWQCGTIQVDFSMPTRLG--------AQYVS 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +    +G++     ++    +G   +W        +++           D
Sbjct: 500 EDGSRQTPVMLHRAIVGSLERFIGILIEDTEGAFPVWLAPEQVVIMNIT------DRQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C  +  RL+  G     D   E+IG +     L   P  ++VG K V   +V ++ R  
Sbjct: 554 YCSVLEKRLNSNGFRAKLDLRNEKIGFKIREHTLQRVPYMIVVGDKEVEQEQVAVRTRTG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+ +         +  
Sbjct: 614 EDLGVMSISDFEGLLQQEIARR 635


>gi|153814564|ref|ZP_01967232.1| hypothetical protein RUMTOR_00778 [Ruminococcus torques ATCC 27756]
 gi|317501270|ref|ZP_07959474.1| threonine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|145848058|gb|EDK24976.1| hypothetical protein RUMTOR_00778 [Ruminococcus torques ATCC 27756]
 gi|316897337|gb|EFV19404.1| threonine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 641

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 96/444 (21%), Positives = 164/444 (36%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L   M+ +   G   +LP G    + +    RE   R 
Sbjct: 229 EYLTMIEEAKKRDHRKLGKELGLF--MMREEGPGFPFFLPNGMVLKNTLLDYWREIHRRA 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E++ P + S  LW  SG +D Y + M      +++     P +      ++ S  +S
Sbjct: 287 GYVEINTPIMLSRHLWETSGHWDHYKENMYT-TVVDEEDFAIKPMNCPGGILVYESEPRS 345

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ L  R E   +  G+MR R F   DA+ F +TPE  K     +      
Sbjct: 346 YRDLPIRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPEQIKDEIKGVVKLIDE 404

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G K   +   + P     S E                   +    +  +  DDI 
Sbjct: 405 VYSLFGFKYH-VELSTRPDDSMGSDE-----------------DWEMATDALRSALDDIG 446

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H E   DS+    +     ++    F    ++       + 
Sbjct: 447 LPYIVNEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQLPLRF----ELEYT 495

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG+ H    +     G++     ++     G    W   +AP ++ ++ I        
Sbjct: 496 GADGEKHRPIMIHRVVFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPISDK---YL 549

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+   L + G     D   E+IG +   A +   P  ++VG+K   + KV ++ R 
Sbjct: 550 DYAGKVLEDLKEAGIRAEIDSRAEKIGYKIREAQMKKIPYMLVVGAKEEEEGKVSVRSRF 609

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
            G      LEE I       +  +
Sbjct: 610 AGDEGQCGLEEFIEQIKEEVAAKK 633


>gi|156974364|ref|YP_001445271.1| threonyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116]
 gi|166225516|sp|A7N009|SYT_VIBHB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|156525958|gb|ABU71044.1| hypothetical protein VIBHAR_02079 [Vibrio harveyi ATCC BAA-1116]
          Length = 642

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   +R + +  G 
Sbjct: 234 LTRLEEAAKRDHRKLGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFVRSKLDEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLIMDRVLWERSGHWDKYADAMFT-TSSENREYALKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQEEVTNCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 410 QTFGFDNIVVKLSTRPEKRVGSDE-----------------IWDQSEEALKQSLESMEIP 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 453 YEIQEGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPGRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 NNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQVILMNIT------DKQSDY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L K G     D   E+IG +     L   P  ++VG + +   ++ ++ R   
Sbjct: 556 VQEVVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 +++ I Y     S  +
Sbjct: 616 DLGKFKVDDFIAYIQDEISIRK 637


>gi|94971761|ref|YP_593809.1| threonyl-tRNA synthetase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553811|gb|ABF43735.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 659

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 160/449 (35%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNR 63
           +YF  + +   RD  +   +L L +  I + +  G+  W P G      +   +REE  +
Sbjct: 244 EYFAKLEEAKKRDHRVLGKQLDLFS--IQELAGPGLIFWHPKGGIIRKEMEDWMREEYLK 301

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +   DLW  SG    Y +      + +D   +  P +      I+R  ++
Sbjct: 302 RGYSLVVTPHVARTDLWKISGHTGYYKQNFFTPMELDDAEYMLKPMNCPGHVLIYRDQLR 361

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++   +R E      G++R R F   DA+ F  TP   +   +      +
Sbjct: 362 SYRDLPMRLGEMGTVYRYERSGVMHGLLRVRGFTQDDAHIFC-TPSQIEDEISGCIDFAI 420

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFDD 241
            + H  G     +                   D  + + F  + +  +    S     D 
Sbjct: 421 SVLHTYGFNEFKVELS--------------EWDPNDRKSFIGTDEQWNLAQGSLKKVLDA 466

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                  +    A Y    DV   KL D++    ++S    +    F    ++       
Sbjct: 467 RGIPYKSMPGEAAFYGPKIDV---KLVDAIGRLWQLSTVQFD----FTLPQRF----ELE 515

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DGK H    +     G++     V+    +     +P  ++P +  L+ I    + 
Sbjct: 516 YVGEDGKRHQPLMVHRALYGSIERFFGVLI---EHYAGAFPVWLSPVQTVLVPIG---EK 569

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   K+   L   G  V  D   E++ ++     L   P  ++VG K    + V ++ 
Sbjct: 570 HLEYANKVGDVLKAKGIRVEVDGRNEKMNAKIREHALQKVPFILVVGDKEAEATSVNVRT 629

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           R     E + L+  +       +  +P L
Sbjct: 630 RGKDKTETVPLDSFVERIEKLIAEKKPTL 658


>gi|114566616|ref|YP_753770.1| threonyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318333|sp|Q0AY05|SYT_SYNWW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114337551|gb|ABI68399.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 635

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 150/442 (33%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   +      G   +LP G    + +    REE  + G
Sbjct: 231 YLQKLEEAKKRDHRRLGRELGLFVVL--DEGPGFPFFLPKGMVLRNELENFWREEHRKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S +LW  SG +D Y   M      ++      P +      +++ ++ SY
Sbjct: 289 YQEIRTPIILSRELWERSGHWDHYKDNM-YFTTIDEGDYAIKPMNCPGGLLVYKQNLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP    ++ L  R E+     G+MR R F   DA+ F L  +             + +
Sbjct: 348 KELPLRMGEMGLVHRHEMSGVLHGLMRVRAFTQDDAHIFMLPEQIIDE-----IKGVMDL 402

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             R                      + V   T   +   S +  +    +     ++   
Sbjct: 403 VDRFYSLFGFP--------------YHVELSTKPEKAMGSDEIWEVATNALIKALEERGM 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H +   D          R  + G I     +       T+ G
Sbjct: 449 EYKVNEGDGAFYGPKIDFHLQDSLD----------RTWQCGTI-QLDFQMPEKFDLTYVG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG  H    +     G++     ++    +  G  +P  +AP ++ ++ I    Q   D
Sbjct: 498 EDGGKHRPVMIHRVIYGSIERFIGILT---EHFGGAFPLWLAPVQVRVLPITQRSQ---D 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A L + G  V  D   E+IG +     L   P  +++G +   +  V ++HR  
Sbjct: 552 YARQVVAELEQAGIRVEADFRSEKIGYKIREGQLQKIPYLLVLGDREAEEGTVSVRHRKE 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G      LEE          + 
Sbjct: 612 GDLGAKLLEEFKQTIVKEIKDK 633


>gi|171318442|ref|ZP_02907597.1| threonyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
 gi|171096356|gb|EDT41258.1| threonyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
          Length = 635

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 148/443 (33%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNDAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEEQFIAESIAFNT-LAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G      +       +P E         
Sbjct: 407 YKDFGFEHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLSWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G    W        +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAWLAPFQAVVLNIA------ESQVE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAHSLTQTLQKQGVRVAGDLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +        + +
Sbjct: 613 VDLGVMPIEAFVERLQEDLRSFK 635


>gi|169334538|ref|ZP_02861731.1| hypothetical protein ANASTE_00941 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259255|gb|EDS73221.1| hypothetical protein ANASTE_00941 [Anaerofustis stercorihominis DSM
           17244]
          Length = 637

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 88/444 (19%), Positives = 158/444 (35%), Gaps = 42/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD       + L   MI +   G   +LP G    + +    REE  + 
Sbjct: 231 EYLAMLEEAKKRDHRKIGKDMDLF--MICEEGPGFPFFLPKGMVIRNELENFWREEHRKR 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +  LW  SG +D Y   M      +D      P +      +++  + S
Sbjct: 289 GYQEIKTPLILNEQLWHTSGHWDHYKDNM-YFTRIDDNDYAIKPMNCPGSMLVYKRKMWS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++    R EL     G+MR R F   DA+ F L  +  +     +      
Sbjct: 348 YRDLPLRIGEMGQVHRHELSGALHGLMRVRTFTQDDAHIFMLPEQIKEE-VIGVIDFIDY 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +++  G K   +   + P     S E                   +    +     ++  
Sbjct: 407 VYNMFGFKY-HVELSTRPDDSMGSDE-----------------DWNMATEALREAMEEKG 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H E   D L    +     ++    F    ++      T+ 
Sbjct: 449 MDYVVNEGDGAFYGPKLDFHLE---DCLGRTWQCGTIQLD----FQMPQRFD----LTYI 497

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG+ H    +     G++     ++    +     +P  +AP +  LI I   +    
Sbjct: 498 GHDGEKHRPVMIHRVIFGSIERFIGILT---EHFAGAFPLWLAPVQAKLIPITDRN---L 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  + I  +L + G     DD  E++G +   A L   P  +I G + + +  + ++ R 
Sbjct: 552 EYVKGIKDKLEQKGIRCEIDDRSEKMGYKIREAQLEKVPYMIIAGDRDMENGVISVRARK 611

Query: 423 TGI-REDMSLEEVINYASHRFSNN 445
            G     MS++E IN A       
Sbjct: 612 DGEDLGAMSVDEFINKAVKEIEEK 635


>gi|170701132|ref|ZP_02892106.1| threonyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
 gi|170133954|gb|EDT02308.1| threonyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
          Length = 635

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 148/443 (33%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNDAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEEQFIAESIAFNT-LAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G      +       +P E         
Sbjct: 407 YKDFGFEHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLSWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G    W        +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAWLAPFQAVVLNIA------ESQVE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAHSLTQTLQKQGVRVAGDLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +        + +
Sbjct: 613 VDLGVMPIEAFVERLQEDLRSFK 635


>gi|116328741|ref|YP_798461.1| threonine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331652|ref|YP_801370.1| threonine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280605|sp|Q04R58|SYT_LEPBJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122283474|sp|Q04ZG7|SYT_LEPBL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116121485|gb|ABJ79528.1| Threonine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125341|gb|ABJ76612.1| Threonine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 639

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 144/443 (32%), Gaps = 42/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L +    +   G   W P G    +++   +R E N+ 
Sbjct: 234 QYLFQIEEAKKRDHRKIGKELDLFS--FQKEGPGFPFWHPKGTILWNSLADYLRAECNKR 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + S++LW +SG +D++ + M    D +++     P +    + I++ H+ S
Sbjct: 292 GYQEIKTPAVLSSELWKKSGHWDNFHENM-YFTDIDEEDYALKPMNCPGCSLIYKHHLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  F +     R EL     G+ R R F   D++ +             +      
Sbjct: 351 YRELPLRFAEFGSVHRHELHGVLHGLFRVRAFTQDDSHIYAPLEHLESE-VTDIIDFTFT 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++ + G         + P       E                   +F   +     +   
Sbjct: 410 VYKKFGFSEFKTFIATRPEKSQGRDE-----------------DWEFATNTLKQSLEKKG 452

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    +     + DS+    +     ++                  + 
Sbjct: 453 IPYGIKEGEGAFYGPKIEF---NIKDSIGRLWQCGTIQVDFSMP--------ERFELDYT 501

Query: 304 GADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            +DG+     M    I     R +  +IE       +    +               +  
Sbjct: 502 DSDGQKKRPVMIHRAIYGSLERFIGILIEHYEGKFPLWISPNQIRILTIT-------EKV 554

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +Y  L   G  V  D   E+IG++   + L      +I+G K +    + ++ R
Sbjct: 555 AEYAKDVYCELVDAGFRVELDTRNEKIGAKIRDSILKKANYLLILGEKEMESGTLAVRKR 614

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                + ++    I+       +
Sbjct: 615 GQEDTKTLTRSGFISNLQDEIKS 637


>gi|187924732|ref|YP_001896374.1| threonyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
 gi|238689588|sp|B2SZG2|SYT_BURPP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187715926|gb|ACD17150.1| threonyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
          Length = 635

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 148/443 (33%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    +   S G+  W P G      V   +R   N 
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HMQDESPGMVFWHPRGWTLWQQVEQYMRRRVND 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW  SG + +Y + M    +   +     P +      +F   ++
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S        +
Sbjct: 346 SYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFNT-LAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G  ++ ++    P     + E    A+ G  +   +       +P E       
Sbjct: 405 SVYKDFGFDNVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   + D+L  + +     +++      G        A +
Sbjct: 458 ----------GAFYGPKVEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G+M     ++   H G    W   +    +++       +  
Sbjct: 497 VAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAWLAPMQVVVMNIA------ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 AEYAQSLAQSLQKQGVRVEADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  M  +  I        +
Sbjct: 611 GGVDLGVMPPDTFIERLRQDVQS 633


>gi|115351412|ref|YP_773251.1| threonyl-tRNA synthetase [Burkholderia ambifaria AMMD]
 gi|122323391|sp|Q0BG06|SYT_BURCM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115281400|gb|ABI86917.1| Ser-tRNA(Thr) hydrolase [Burkholderia ambifaria AMMD]
          Length = 635

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 148/443 (33%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNDAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEEQFIAESIAFNT-LAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G      +       +P E         
Sbjct: 407 YKDFGFEHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLSWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G    W        +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAWLAPFQAVVLNIA------ESQVE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAHSLTQTLQKQGVRVAGDLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +        + +
Sbjct: 613 VDLGVMPIEAFVERLQEDLRSFK 635


>gi|261212792|ref|ZP_05927076.1| threonyl-tRNA synthetase [Vibrio sp. RC341]
 gi|260837857|gb|EEX64534.1| threonyl-tRNA synthetase [Vibrio sp. RC341]
          Length = 642

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 147/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E     D  E  +  S   MD P   +          
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIW---DKSEQALIDSLKAMDIPFEIQ---------- 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 457 ----EGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPTRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 SNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVVVNIT------DKQADY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 556 AHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 L++ I +      + +
Sbjct: 616 DLGKFKLDDFIEHIQAEIVSRK 637


>gi|328472989|gb|EGF43837.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus 10329]
          Length = 642

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   +R++ N    
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFVRDKLNEYDY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQEEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 410 QTFGFDNIVVKLSTRPEKRVGSDE-----------------IWDQSEEALKQSLESMEIP 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 453 YEIQEGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPGRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + +    V +    +G++     ++   + G    W        +++             
Sbjct: 502 NNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVLMNIT------DKQSGY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++I  +L K G     D   E+IG +     L   P  ++VG + +   ++ ++ R   
Sbjct: 556 VQEIVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 +++ I Y     S+ +
Sbjct: 616 DLGKFKVDDFIAYIQDEISSRK 637


>gi|172060451|ref|YP_001808103.1| threonyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
 gi|238689138|sp|B1YP13|SYT_BURA4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|171992968|gb|ACB63887.1| threonyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
          Length = 635

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 148/443 (33%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQEESPGMVFWHPKGWALWQQVEQYMRRRVNDAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEEQFIAESIAFNT-LAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G      +       +P E         
Sbjct: 407 YKDFGFEHIDIKLSLRPEQRAGTDETWDRAEQGLRDALTACGLSWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G    W        +++       +   +
Sbjct: 499 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAWLAPFQAVVLNIA------ESQAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAHSLTQTLQKQGVRVAGDLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M +E  +        + +
Sbjct: 613 VDLGVMPIEAFVERLQEDLRSFK 635


>gi|91784428|ref|YP_559634.1| threonyl-tRNA synthetase [Burkholderia xenovorans LB400]
 gi|123358618|sp|Q13WF7|SYT_BURXL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91688382|gb|ABE31582.1| Ser-tRNA(Thr) hydrolase [Burkholderia xenovorans LB400]
          Length = 635

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 148/443 (33%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    +   S G+  W P G      V   +R   N 
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HMQDESPGMVFWHPRGWTLWQQVEQYMRRRVND 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW  SG + +Y + M    +   +     P +      +F   ++
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S        +
Sbjct: 346 SYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFNT-LAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   + ++    P     + E    A+ G  +   +       +P E       
Sbjct: 405 SVYKDFGFDHVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   + D+L  + +     +++      G        A +
Sbjct: 458 ----------GAFYGPKVEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G+M     ++   H G    W   +    +++       +  
Sbjct: 497 VAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAWLAPMQVVVMNIA------ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 TEYAQSLAQSLQKQGVRVAADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  M L+  I        +
Sbjct: 611 GGVDLGVMPLDTFIERLRQDVQS 633


>gi|54298706|ref|YP_125075.1| threonyl-tRNA synthetase [Legionella pneumophila str. Paris]
 gi|73919801|sp|Q5X1H3|SYT_LEGPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53752491|emb|CAH13923.1| Threonyl tRNA synthetase [Legionella pneumophila str. Paris]
          Length = 637

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 142/440 (32%), Gaps = 40/440 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD       L L        + G+  W P G      +   +R      
Sbjct: 230 EYLFRLEEAEKRDHRKLGKALDLF--HFQDIAPGMVFWHPKGWTIYQELEHYMRNRLVDF 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P L    LW +SG + ++  EM  + +  ++     P        I+   +KS
Sbjct: 288 GYQEIRTPQLVDRSLWEKSGHWANFRDEMF-VTETENRHYAVKPMSCPCHVQIYNHGLKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R E      G+MR R  +  DA+ F    +        M      
Sbjct: 347 YRDLPLRLSEFGNCHRCEPSGALHGLMRVRNMVQDDAHIFCTEDQIQSE-VAMMLELVQS 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   I  R    P     S +    A+T        ++      P E        
Sbjct: 406 VYKDFGFTEIKYRLALRPEKRVGSDDVWDKAETALKLAMLGRNIEWVDAPGE-------- 457

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y    +     L D L    +     ++                A++ 
Sbjct: 458 ---------GAFYGPKIEC---SLSDCLGRIWQCGTIQVDFSMPARL--------EASYV 497

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG       +    +G+      ++   + GK  +W   V    +++       +   
Sbjct: 498 AEDGSKQTPVMLHRAILGSFERFMGILIEHYAGKLPLWLSPVQAVVLTI------SEKQN 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   L K G    +D   E+IG +     L   P  ++VG K V + +V ++ R 
Sbjct: 552 EYAEKVRKTLQKRGIRANFDLRNEKIGFKIREHTLQKIPYLLVVGDKEVENCQVAVRTRD 611

Query: 423 TGIREDMSLEEVINYASHRF 442
                 M+++ + +  +   
Sbjct: 612 GIDLGVMTIDTICDTLTQEI 631


>gi|258625495|ref|ZP_05720387.1| threonyl-tRNA synthetase [Vibrio mimicus VM603]
 gi|258582201|gb|EEW07058.1| threonyl-tRNA synthetase [Vibrio mimicus VM603]
          Length = 642

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 148/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            + + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LIRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E     D  E  +  S   M+ P   +          
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIW---DKSEQALIDSLKAMEIPFEIQ---------- 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 457 ----EGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPTRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 SNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQVVVVNIT------DKQADY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 556 AHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 L++ I +      + +
Sbjct: 616 DLGKFKLDDFIKHIQAEIVSRK 637


>gi|28898054|ref|NP_797659.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362413|ref|ZP_05775365.1| threonine--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|260878403|ref|ZP_05890758.1| threonine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|31340445|sp|Q87Q70|SYT_VIBPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28806268|dbj|BAC59543.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308091059|gb|EFO40754.1| threonine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|308115583|gb|EFO53123.1| threonine--tRNA ligase [Vibrio parahaemolyticus K5030]
          Length = 642

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   +R++ N    
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFVRDKLNEYDY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQEEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 410 QTFGFDNIVVKLSTRPEKRVGSDE-----------------IWDQSEEALKQSLESMEIP 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 453 YEIQEGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPGRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + +    V +    +G++     ++   + G    W        +++             
Sbjct: 502 NNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVLMNIT------DKQSGY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++I  +L K G     D   E+IG +     L   P  ++VG + +   ++ ++ R   
Sbjct: 556 VQEIVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 +++ I Y     S+ +
Sbjct: 616 DLGKFKVDDFIAYIQDEISSRK 637


>gi|332981193|ref|YP_004462634.1| Ser-tRNA(Thr) hydrolase [Mahella australiensis 50-1 BON]
 gi|332698871|gb|AEE95812.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Mahella
           australiensis 50-1 BON]
          Length = 637

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 159/446 (35%), Gaps = 41/446 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L +  +H+   G   + P G    + +    R+E  + 
Sbjct: 230 EYLTRIEEAKQRDHRKLGQELDLFS--LHEEGPGFPFFHPKGMIIRNVLEDFWRKEHRKH 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + + +LW++SG +D Y   M      +D+     P +      +++  + S
Sbjct: 288 GYEEIKTPIILNKELWIQSGHWDHYKDNM-YFTKIDDQDYAIKPMNCPGSMIMYKRTMHS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y+ LP    ++ L  R E      G+MR R F   DA+ F L  + +      +      
Sbjct: 347 YKELPIRLCELGLVHRHEKSGVLHGLMRVRCFTQDDAHIFMLPSQVTDE-IIGVIDLIDY 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            +   G K   +   + P     + E                   +    +         
Sbjct: 406 FYSLFGFKYH-VELSTRPEDSMGTDE-----------------QWEMATEALKVALGKKG 447

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H E   DS+    +     ++    F    ++      T+ 
Sbjct: 448 LDYKVNEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQMPERFD----LTYI 496

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G D + H    +     G++    A++   + G    W   +AP ++ ++ I        
Sbjct: 497 GEDSEKHRPVMLHRVIFGSIERFIAILTEHYAGALPTW---LAPVQVKILPITDRS---L 550

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +    +   L ++      D+  E+IG +   A +   P  +++G K V +  V ++ R 
Sbjct: 551 EYARSLQMHLEELDIRTELDNRNEKIGYKIRAAQIEKVPYMLVIGDKEVENVAVSVRSRS 610

Query: 423 TGIREDMSLEEVINYASHRFSNNRPV 448
            G    MS+++  N       + + +
Sbjct: 611 KGDMGSMSVDDFENLIKTEIKSKKAI 636


>gi|312128091|ref|YP_003992965.1| threonyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311778110|gb|ADQ07596.1| threonyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 639

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 97/449 (21%), Positives = 170/449 (37%), Gaps = 44/449 (9%)

Query: 2   RRSKY--FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   +L +L+E  R D      +L L    I +   G   +LP G    + +    R
Sbjct: 227 KKSQLDEYLTMLEEAKRRDHRKLGRELDLFD--IFEEGPGFPFFLPKGMIIRNILEDFWR 284

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  + G  E+  P + + DLWV+SG +D Y + M      +D+     P +      ++
Sbjct: 285 EEHKKRGYQEIKTPIMLTKDLWVQSGHWDHYKENM-YFTKIDDQEFAIKPMNCPGSILVY 343

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +    SYR LP    ++ L  R EL     G+MR R F   DA+ F L P   K     +
Sbjct: 344 KRKSHSYRELPERLCELGLVHRHELSGVLHGLMRVRCFTQDDAHIFML-PSQIKDEIKGV 402

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                  +   G K   +   + P     + E   +A+T                 +   
Sbjct: 403 IDLIDYFYSVFGFKYH-VELSTRPEISMGTDEQWNMAET-----------------ALKE 444

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +++     I E   A Y    D H E   DSL    + +   ++    F    ++   
Sbjct: 445 ALEEVGIDYKINEGDGAFYGPKIDFHLE---DSLKRTWQCATIQLD----FQMPERFD-- 495

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + G DG  H    +     G++    A++    +     +P  +AP +I +I +  
Sbjct: 496 --LYYIGEDGAKHRPVMLHRVVFGSIERFIAILT---EHFAGAFPVWLAPTQIRVIPVSD 550

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +     D   KI   L + G  V  D   E +G +   A L   P  VIVG K   ++ +
Sbjct: 551 N---FNDYAAKISQTLKENGFRVEEDYRSETVGYKIRDAQLQKIPYMVIVGEKERRENTI 607

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G     ++++ ++    +    
Sbjct: 608 AVRDRKKGDLGSFTIDKFVSMVKEKVEKK 636


>gi|262164341|ref|ZP_06032079.1| threonyl-tRNA synthetase [Vibrio mimicus VM223]
 gi|262026721|gb|EEY45388.1| threonyl-tRNA synthetase [Vibrio mimicus VM223]
          Length = 642

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 147/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E     D  E  +  S   MD P   +          
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIW---DKSEQALIDSLKAMDIPFEIQ---------- 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 457 ----EGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPTRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 SNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVVVNIT------DKQADY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 556 AHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 L++ I +      + +
Sbjct: 616 DLGKFKLDDFIKHIQAEIVSRK 637


>gi|331089982|ref|ZP_08338872.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330402896|gb|EGG82462.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 641

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 96/444 (21%), Positives = 164/444 (36%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L   M+ +   G   +LP G    + +    RE   R 
Sbjct: 229 EYLTMIEEAKKRDHRKLGKELGLF--MMREEGPGFPFFLPNGMVLKNTLLDYWREIHRRA 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E++ P + S  LW  SG +D Y + M      +++     P +      ++ S  +S
Sbjct: 287 GYVEINTPIMLSRHLWETSGHWDHYKENMYT-TVVDEEDFAIKPMNCPGGILVYESEPRS 345

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ L  R E   +  G+MR R F   DA+ F +TPE  K     +      
Sbjct: 346 YRDLPIRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTPEQIKDEIKGVVKLIDE 404

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G K   +   + P     S E                   +    +  +  DDI 
Sbjct: 405 VYSLFGFKYH-VELSTRPDDSMGSDE-----------------DWEMATDALRSALDDIG 446

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H E   DS+    +     ++    F    ++       + 
Sbjct: 447 LPYIVNEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQLPLRF----ELEYT 495

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG+ H    +     G++     ++     G    W   +AP ++ ++ I        
Sbjct: 496 GADGEKHRPIMIHRVVFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPISDK---YL 549

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+   L + G     D   E+IG +   A +   P  ++VG+K   + KV ++ R 
Sbjct: 550 DYAGKVLEDLKEAGIRAEIDSRAEKIGYKIREAQMKKIPYMLVVGAKEEEEGKVSVRSRF 609

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
            G      LEE I       +  +
Sbjct: 610 VGDEGQCGLEEFIEQIKEEVAAKK 633


>gi|148358548|ref|YP_001249755.1| threonyl tRNA synthase [Legionella pneumophila str. Corby]
 gi|296108363|ref|YP_003620064.1| threonyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
 gi|166223351|sp|A5IAK9|SYT_LEGPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148280321|gb|ABQ54409.1| threonyl tRNA synthase [Legionella pneumophila str. Corby]
 gi|295650265|gb|ADG26112.1| threonyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
          Length = 637

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 142/440 (32%), Gaps = 40/440 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD       L L        + G+  W P G      +   +R      
Sbjct: 230 EYLFRLEEAEKRDHRKLGKALDLF--HFQDIAPGMVFWHPKGWTIYQELEHYMRNRLVDF 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P L    LW +SG + ++  EM  + +  ++     P        I+   +KS
Sbjct: 288 GYQEIRTPQLVDRSLWEKSGHWANFRDEMF-VTETENRHYAVKPMSCPCHVQIYNHGLKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R E      G+MR R  +  DA+ F    +        M      
Sbjct: 347 YRDLPLRLSEFGNCHRCEPSGALHGLMRVRNMVQDDAHIFCTEDQIQSE-VAMMLELVQS 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   I  R    P     S +    A+T        ++      P E        
Sbjct: 406 VYKDFGFTEIKYRLALRPEKRVGSDDVWDKAETALKLAMQGRNIEWVDAPGE-------- 457

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y    +     L D L    +     ++                A++ 
Sbjct: 458 ---------GAFYGPKIEC---SLSDCLGRIWQCGTIQVDFSMPARL--------EASYV 497

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG       +    +G+      ++   + GK  +W   V    +++       +   
Sbjct: 498 AEDGSKQTPVMLHRAILGSFERFMGILIEHYAGKLPLWLSPVQAVVLTI------SEKQN 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   L K G    +D   E+IG +     L   P  ++VG K V + +V ++ R 
Sbjct: 552 EYAEKVRKTLQKRGIRANFDLRNEKIGFKIREHTLQKIPYLLVVGDKEVENCQVAVRTRD 611

Query: 423 TGIREDMSLEEVINYASHRF 442
                 M+++ + +  +   
Sbjct: 612 GIDLGVMTIDTICDTLTQEI 631


>gi|262403446|ref|ZP_06080004.1| threonyl-tRNA synthetase [Vibrio sp. RC586]
 gi|262349950|gb|EEY99085.1| threonyl-tRNA synthetase [Vibrio sp. RC586]
          Length = 642

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 147/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSVFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E     D  E  +  S   M+ P   +          
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIW---DKSEQALIDSLKAMEIPFEIQ---------- 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 457 ----EGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPTRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 SNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVVVNIT------DKQADY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 556 AHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 L++ I +      + +
Sbjct: 616 DLGKFKLDDFIKHIQAEIVSRK 637


>gi|241663242|ref|YP_002981602.1| threonyl-tRNA synthetase [Ralstonia pickettii 12D]
 gi|240865269|gb|ACS62930.1| threonyl-tRNA synthetase [Ralstonia pickettii 12D]
          Length = 635

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 147/444 (33%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    I ++S G   W P G      +   +R     
Sbjct: 229 EAYLHMLEEAEKRDHRKLGRELDLF--HIDEYSPGTVFWHPKGWTLWQEIEQYMRRVYRE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +D Y + M  + +   +     P +      I++  IK
Sbjct: 287 NGYQEVKGPQILDKTLWEKTGHWDKYRENMF-ITESEKREYALKPMNCPGHILIYKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +     R+E      G+MR R F   D + F  T +  +           
Sbjct: 346 SYRDLPLRFGEFGACHRNEPSGGLHGIMRVRGFTQDDGHIFC-TEDMIQAEVTAFTTLLQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   I  +  + P     + E                   D    +        
Sbjct: 405 KVYKDFGFTEILYKLSTRPDKRIGTEE-----------------SWDRAEAALAEGLRAS 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                 +    A Y    +     L D+L    +     ++              + A F
Sbjct: 448 GCEFEYLPGEGAFYGPKIEY---VLKDALGRQWQCGTIQVDPNLP--------ERLDAEF 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG  H    +    +G++     ++   + G    W           + + +     
Sbjct: 497 VGEDGARHRPIMLHRAIVGSLERFIGILIEQYAGALPTW------LSPVQVAVLSITDSH 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G     D   E+IG +     +   P Q++VG K   +++V ++ R
Sbjct: 551 AEYAQSVVQSLQKQGFRAVVDLRNEKIGYKIREHSVQKVPYQIVVGDKERDENQVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M L   +    +  +N 
Sbjct: 611 GNVDLGSMPLSAFVERLQNDLANK 634


>gi|73919802|sp|Q5ZS05|SYT_LEGPH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 637

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 142/440 (32%), Gaps = 40/440 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD       L L        + G+  W P G      +   +R      
Sbjct: 230 EYLFRLEEAEKRDHRKLGKALDLF--HFQDIAPGMVFWHPKGWTIYQELEHYMRNRLVDF 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P L    LW +SG + ++  EM  + +  ++     P        I+   +KS
Sbjct: 288 GYQEIRTPQLVDRSLWEKSGHWANFRDEMF-VTETENRHYAVKPMSCPCHVQIYNHGLKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R E      G+MR R  +  DA+ F    +        M      
Sbjct: 347 YRDLPLRLSEFGNCHRCEPSGALHGLMRVRNMVQDDAHIFCTEDQIQSE-VAMMLELVQS 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   I  R    P     S +    A+T        ++      P E        
Sbjct: 406 VYKDFGFTEIKYRLALRPEKRVGSDDVWDKAETALKLAMQGRNIEWVDAPGE-------- 457

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y    +     L D L    +     ++                A++ 
Sbjct: 458 ---------GAFYGPKIEC---SLSDCLGRIWQCGTIQVDFSMPARL--------EASYV 497

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG       +    +G+      ++   + GK  +W   V    +++       +   
Sbjct: 498 AEDGSKQTPVMLHRAILGSFERFMGILIEHYAGKLPLWLSPVQAIVLTI------SEKQN 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   L K G    +D   E+IG +     L   P  ++VG K V + +V ++ R 
Sbjct: 552 EYAEKVRKTLQKRGIRANFDLRNEKIGFKIREHTLQKIPYLLVVGDKEVENCQVAVRTRD 611

Query: 423 TGIREDMSLEEVINYASHRF 442
                 M+++ + +  +   
Sbjct: 612 GIDLGVMTIDTICDTLTQEI 631


>gi|117923678|ref|YP_864295.1| threonyl-tRNA synthetase [Magnetococcus sp. MC-1]
 gi|259516564|sp|A0L4J6|SYT_MAGSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|117607434|gb|ABK42889.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Magnetococcus
           sp. MC-1]
          Length = 648

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 149/443 (33%), Gaps = 40/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y   + +   RD       L L +  + +    G+  W P G +    +    ++     
Sbjct: 232 YLTQMEEAEKRDHRRIGKDLDLFS--VQEDAGGGLVFWHPRGSRIRRVIEDFWKDRHVEA 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + +  LW  SG  D Y   M    + +++A    P +      I++    S
Sbjct: 290 GYEFLYTPHIANRQLWNTSGHTDFYSDSMFSPMEVDEQAYQIRPMNCPFHILIYKDRRHS 349

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LPF + ++   +R E+     G+ R R F   DA+ F  T +  +    ++    L 
Sbjct: 350 YRELPFRWGELGTVYRYEMSGALHGLFRVRGFTQDDAHIFC-TEQQIEEEIQRILDLTLD 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G     +   + P                      S    D    +         
Sbjct: 409 ILRTYGFSDFEINLSTRPEKS-----------------VGSAAIWDKATEALRRAIVSRD 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    DV   K+ DS+    + S   ++    F    ++ +     + 
Sbjct: 452 LSYVVDEGGGAFYGPKIDV---KITDSIGRKWQCSTVQLD----FNLPERFDMG----YI 500

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG+ H    +    +G++     ++   + G   +W   V     S+           
Sbjct: 501 GEDGESHRPIMIHRALMGSLERFFGILVEHYAGWFPMWLAPVQAVVCSIT------DAQH 554

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E + A L K G  V  D   E++G +     L   P  ++VG K   +  V ++ R 
Sbjct: 555 AYAETVLAALKKAGLRVEIDLRNEKVGYKIREHTLKRVPYLLVVGDKEREEGTVNVRLRS 614

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 + +++V+       ++ 
Sbjct: 615 GKSLGSLPIQDVVERLVEEAASR 637


>gi|89094703|ref|ZP_01167639.1| threonyl-tRNA synthetase [Oceanospirillum sp. MED92]
 gi|89081049|gb|EAR60285.1| threonyl-tRNA synthetase [Oceanospirillum sp. MED92]
          Length = 639

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 151/447 (33%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD      +L L    + + + G+  W P G      +   +R++
Sbjct: 226 KALKAYLHRLEEAEKRDHRKLGKQLDLF--HLQEEAPGMVFWHPKGWALYQGIEQYMRQK 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                 +E+  P +    LW +SG ++ + +EM       ++     P +      ++  
Sbjct: 284 LRPRKYVEVKTPQVVERTLWEKSGHWEKFSEEMFT-THSENRDFAVKPMNCPCHVQVYNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            I+SYR+LP    +     R+E      G+MR R F+  D + F           ++   
Sbjct: 343 GIRSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFVQDDGHIFCAEDSIQSE-VSEFID 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G + I  +  + P     S E                   D    +     
Sbjct: 402 FLHEVYADFGFQEIQYKLSTRPEKRVGSDE-----------------VWDKSEKALADAL 444

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D+      ++    A Y    +     L D L    +     ++       G        
Sbjct: 445 DNAGLKWDLLPGEGAFYGPKIEF---SLKDCLGRVWQCGTVQVDFSMPGRLG-------- 493

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A F    G+      +    +G+      ++  ++ G    W   +AP +  ++NI    
Sbjct: 494 AQFVNEQGERETPVMIHRAILGSFERFIGILIENYAGALPTW---LAPVQAVVMNITDK- 549

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D CEK+   L   G     D   E+IG +     L   P  +++G K V    V +
Sbjct: 550 --QADYCEKVVQNLENKGFRAESDLRNEKIGFKIRERTLQKVPYLLVIGDKEVEAGAVAV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       M L+E +N      +  
Sbjct: 608 RTRTGEDLGSMPLDEFVNLLGSDVAKK 634


>gi|90407011|ref|ZP_01215201.1| threonyl-tRNA synthetase [Psychromonas sp. CNPT3]
 gi|90311882|gb|EAS39977.1| threonyl-tRNA synthetase [Psychromonas sp. CNPT3]
          Length = 635

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 142/448 (31%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD      +L L    +   + G+  W   G      +   IRE+
Sbjct: 226 KQLKAYLKRLEEAAKRDHRKIGKQLDLY--HMQDEAPGMVFWHANGWTIYRELEKYIREQ 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P +    LW +SG +  Y   M       ++     P +      IF  
Sbjct: 284 TEEYGYQEVKAPQILDRSLWEKSGHWAKYKDNMF-CTCSENRDYAIKPMNCPGHVQIFNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T        +    
Sbjct: 343 GLKSYRDLPLRMSEFGSCHRNEPSGSLHGLMRVRAFTQDDAHIFC-TEAQILDEVSSCIK 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G ++I ++  + P                           D    +     
Sbjct: 402 MVFECYKTFGFENIDVKLSTRPEQR-----------------VGDDATWDKAEAALADAL 444

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                  S +    A Y    +     L D L    +     ++                
Sbjct: 445 TKNDVEFSWLPGEGAFYGPKIEF---TLHDCLGRAWQCGTIQLDFSMPGRLD-------- 493

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           ATF G D + H    +    +G++     ++   + G    W        +++       
Sbjct: 494 ATFVGEDNERHTPVMIHRAILGSLERWIGILTEEYAGIFPTWLSPQQVVVMNIT------ 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +   ++  +L K G  V  D   E+IG +     L   P  ++VG K V   ++ I
Sbjct: 548 DKQSEYVAEVVTKLKKSGIRVISDLRNEKIGFKIREHTLKRVPYLLVVGDKEVEARELSI 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R         +++ I Y        R
Sbjct: 608 RTRKGDDLGKFKIDDFITYIKEEIVTRR 635


>gi|53805116|ref|YP_113204.1| threonyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
 gi|73919805|sp|Q60AZ3|SYT_METCA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53758877|gb|AAU93168.1| threonyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
          Length = 638

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 142/438 (32%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W P G      +   +R      G
Sbjct: 231 YLQRLEEAERRDHRKLGKALDLF--HMQEEAPGMVFWHPKGWILWQEIEQYMRRVFRDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG ++ +  EM       ++     P +      ++   +KSY
Sbjct: 289 YQEIRTPLVVARTLWERSGHWEKFSDEMFT-TASEERDYAIKPMNCPCHVQVYNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+EL     G+MR R F   DA+ F    +      ++      ++
Sbjct: 348 RDLPLRLAEFGSCHRNELSGALHGLMRVRGFTQDDAHIFCTEEQIQDE-VSRFIDLLFKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++  + P     S E                   D    +  T  +    
Sbjct: 407 YADFGFSEVQIKLSTRPEKRVGSDE-----------------VWDKAEHALETALNAKGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++       G        AT+  
Sbjct: 450 AWDLQPGEGAFYGPKIEF---SLKDCLDRVWQCGTIQVDFSMPDRLG--------ATYVA 498

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG  H  V +    +G++     ++   + G+  +W   V    +++           D
Sbjct: 499 EDGARHVPVMLHRAILGSLERFVGILTEHYAGQYPLWLAPVQAVVLNIT------DRQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++       G  V  D   E++G +     +   P  +IVG K V    V ++ R  
Sbjct: 553 YAREVAQEFVSKGFRVIADLRNEKVGFKIREHSMQRVPYLLIVGDKEVEAGSVSLRTRDG 612

Query: 424 GIREDMSLEEVINYASHR 441
                  + +++   +  
Sbjct: 613 KDHGSFGIGDLVAKFTEE 630


>gi|297569216|ref|YP_003690560.1| threonyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925131|gb|ADH85941.1| threonyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
          Length = 646

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/445 (20%), Positives = 158/445 (35%), Gaps = 40/445 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y   + +   RD      +L L T  I  Q   G+  W P G      +    R+E  R 
Sbjct: 233 YLERLEEAKKRDHRKLGKELELFT--IQDQIGPGLILWQPKGALLRRLIEDYWRDEHYRH 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +S P +   +LW  SG  D YG+ M    +  +      P +      I+++  +S
Sbjct: 291 GYELLSTPHIARRELWQTSGHLDFYGENMYSPMEVEEVQYQLKPMNCPFHIAIYKTRKRS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR  P  + ++   +R E      G+MR R F   DA+ F   P+  +    ++    L 
Sbjct: 351 YREFPLRWCELGTVYRFEKTGALHGLMRVRGFTQDDAHIFCR-PDHLEEEIFRILDLNLH 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G     +   + P                  +   S +  D    +     +   
Sbjct: 410 ILQAFGFADYDIYLSTRP-----------------EKYVGSDENWDRSTAALQAALEKKG 452

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              S+       Y    D+   K+ D L    + S   ++    F    ++       + 
Sbjct: 453 LSYSLDPGEGVFYGPKIDI---KIKDVLGRAWQCSTIQVD----FNLPERF----ELGYT 501

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG++H    +    +G++     V+    +     +P  +AP +  + NI        
Sbjct: 502 GEDGREHRPIMIHRALMGSLERFFGVLI---EHYAGAFPLWLAPVQARICNIT---DAQL 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  E++YA L + G  V  D   E++  +   A L   P  +IVG K  ++  V ++ R 
Sbjct: 556 DYGEEVYAALRRAGVRVEKDLRNEKLNYKIREAQLQKIPYMLIVGDKEAAEGTVTVRQRD 615

Query: 423 TGIREDMSLEEVINYASHRFSNNRP 447
                 M + E     +   + N+ 
Sbjct: 616 GKNLPPMPVSEFAALVAAEVTVNQE 640


>gi|257455909|ref|ZP_05621126.1| threonyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
 gi|257446655|gb|EEV21681.1| threonyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
          Length = 642

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 148/437 (33%), Gaps = 40/437 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHPNGWTMWQVLEQYMRKVQKDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG +++Y  +M+       +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQIVDRSLWEKSGHWENY-GDMMFTTHSEKRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  + +        L +
Sbjct: 348 RDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCSNEQIKQEA-QDFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + M+  + P     + E                   D          D+   
Sbjct: 407 YKDFGFDDVQMKLSTRPEKRVGADE-----------------LWDLAEKDLADALDNAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    +     L D L    +     ++       G        A F  
Sbjct: 450 DWQYLPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLDFNLPERLG--------AEFVN 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G+      +    +G+      ++   + G   +W        +++            
Sbjct: 499 EQGERERPVMLHRAILGSFERFIGMLIEHYAGWMPVWLAPQQVVVMNIT------DNQAP 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           AC+K+  +L++ G  V  D   E+IG +     L   P  +++G K V  ++V ++ R  
Sbjct: 553 ACQKVAEQLNQAGLRVITDLRNEKIGFKIRERTLERIPYMIVMGDKEVESNQVNVRTREG 612

Query: 424 GIREDMSLEEVINYASH 440
                MS++  I+  + 
Sbjct: 613 DNLGVMSIDAFIDLVNQ 629


>gi|269966330|ref|ZP_06180417.1| threonyl-tRNA synthetase [Vibrio alginolyticus 40B]
 gi|269829069|gb|EEZ83316.1| threonyl-tRNA synthetase [Vibrio alginolyticus 40B]
          Length = 485

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR + +  G 
Sbjct: 77  LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFIRAKLDEYGY 134

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 135 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 193

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 194 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQEEVTNCIKMVYDTY 252

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 253 QTFGFDNIVVKLSTRPEKRVGSDE-----------------IWDQSEEALKQSLESMDIP 295

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 296 YEIQEGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPGRLG--------ATYVGE 344

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + +    V +    +G++     ++   + G    W        +++             
Sbjct: 345 NNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVLMNIT------DKQSGY 398

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++I  +L K G     D   E+IG +     L   P  ++VG + +   ++ ++ R   
Sbjct: 399 VQEIVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGK 458

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 +++ I Y     S+ +
Sbjct: 459 DLGKFKVDDFIAYIQDEISSRK 480


>gi|145589014|ref|YP_001155611.1| threonyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|189083617|sp|A4SX33|SYT_POLSQ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145047420|gb|ABP34047.1| Ser-tRNA(Thr) hydrolase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 640

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 140/442 (31%), Gaps = 41/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L      + + G+  W P G      V   +R      G
Sbjct: 231 YLHMLEESEKRDHRRLGKQLDLF--HFQEEAPGLIFWHPKGWSIWQEVEQYMRRVYQNEG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y + M    +  ++A    P +      I+ S + SY
Sbjct: 289 YQEVKAPQILDRGLWEKSGHWDNYKENMFT-TESENRAYALKPMNCPGHVQIYNSGLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  F +     R+E      G+MR R F   D + F    +           +   +
Sbjct: 348 RELPLRFGEFGQCHRNEPSGALHGLMRVRGFTQDDGHIFCTEDQIQSE-VAAFDKAVRAV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++    P                           D    +          
Sbjct: 407 YQDFGFTEVAVKLALRPAKR-----------------VGDDAIWDKAEDALRGALKASGQ 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L DS+    +     ++       G        A +  
Sbjct: 450 EWEELPGEGAFYGPKIEYH---LKDSIGRTWQCGTIQVDFSMPARLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G++     ++    +      P  +AP +  ++NI  +      
Sbjct: 499 EDNSRKTPVMLHRAIVGSLERFIGILI---ENHAGNMPVWLAPTQAVVLNISGNSA---A 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L K G  V  D   E+I  +     L   P  ++VG K    + V ++ R  
Sbjct: 553 YAQKVQQSLKKQGFRVESDLRNEKITYKIREHALQKIPFLLVVGDKESESNTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M L+  +       S  
Sbjct: 613 VDLGVMPLDAFVARLQQDISQK 634


>gi|52842920|ref|YP_096719.1| threonyl-tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52630031|gb|AAU28772.1| threonyl tRNA synthase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 646

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 142/440 (32%), Gaps = 40/440 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD       L L        + G+  W P G      +   +R      
Sbjct: 239 EYLFRLEEAEKRDHRKLGKALDLF--HFQDIAPGMVFWHPKGWTIYQELEHYMRNRLVDF 296

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P L    LW +SG + ++  EM  + +  ++     P        I+   +KS
Sbjct: 297 GYQEIRTPQLVDRSLWEKSGHWANFRDEMF-VTETENRHYAVKPMSCPCHVQIYNHGLKS 355

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R E      G+MR R  +  DA+ F    +        M      
Sbjct: 356 YRDLPLRLSEFGNCHRCEPSGALHGLMRVRNMVQDDAHIFCTEDQIQSE-VAMMLELVQS 414

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   I  R    P     S +    A+T        ++      P E        
Sbjct: 415 VYKDFGFTEIKYRLALRPEKRVGSDDVWDKAETALKLAMQGRNIEWVDAPGE-------- 466

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y    +     L D L    +     ++                A++ 
Sbjct: 467 ---------GAFYGPKIEC---SLSDCLGRIWQCGTIQVDFSMPARL--------EASYV 506

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG       +    +G+      ++   + GK  +W   V    +++       +   
Sbjct: 507 AEDGSKQTPVMLHRAILGSFERFMGILIEHYAGKLPLWLSPVQAIVLTI------SEKQN 560

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   L K G    +D   E+IG +     L   P  ++VG K V + +V ++ R 
Sbjct: 561 EYAEKVRKTLQKRGIRANFDLRNEKIGFKIREHTLQKIPYLLVVGDKEVENCQVAVRTRD 620

Query: 423 TGIREDMSLEEVINYASHRF 442
                 M+++ + +  +   
Sbjct: 621 GIDLGVMTIDTICDTLTQEI 640


>gi|258623264|ref|ZP_05718271.1| threonyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|262173542|ref|ZP_06041219.1| threonyl-tRNA synthetase [Vibrio mimicus MB-451]
 gi|258584450|gb|EEW09192.1| threonyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|261890900|gb|EEY36887.1| threonyl-tRNA synthetase [Vibrio mimicus MB-451]
          Length = 642

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 147/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E     D  E  +  S   M+ P   +          
Sbjct: 410 TTFGFQNIVVKLSTRPEKRVGSDEIW---DKSEQALIDSLKAMEIPFEIQ---------- 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 457 ----EGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPTRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 SNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVVVNIT------DKQADY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 556 AHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 L++ I +      + +
Sbjct: 616 DLGKFKLDDFIKHIQAEIVSRK 637


>gi|170695920|ref|ZP_02887060.1| threonyl-tRNA synthetase [Burkholderia graminis C4D1M]
 gi|170139218|gb|EDT07406.1| threonyl-tRNA synthetase [Burkholderia graminis C4D1M]
          Length = 635

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 146/438 (33%), Gaps = 41/438 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    +   S G+  W P G      V   +R   N 
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HMQDESPGMVFWHPRGWTLWQQVEQYMRRRVND 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW  SG + +Y + M    +   +     P +      +F   ++
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S        +
Sbjct: 346 SYRDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFNT-LAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   + ++    P     + E    A+ G  +   +       +P E       
Sbjct: 405 SVYSDFGFDHVEIKLSLRPDARAGTDETWDRAEQGLREALTACGVTWEELPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   + D+L  + +     +++      G        A +
Sbjct: 458 ----------GAFYGPKVEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G+M     ++   H G    W   +    +++       +  
Sbjct: 497 VAEDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAWLAPMQVVVMNIA------ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 AEYAQSLAQSLQKQGVRVEADLRNEKISYKIREHTLEKVPYLLVVGDKEREAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYAS 439
                  M  +  I    
Sbjct: 611 GGVDLGVMPADTFIERLR 628


>gi|168188008|ref|ZP_02622643.1| threonyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
 gi|169294168|gb|EDS76301.1| threonyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
          Length = 637

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 156/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + +   G   + P G    + +    RE   + G
Sbjct: 231 YLHMLEEAKKRDHRKLGRELGLFD--LKEEGPGFPFFYPKGMILRNTLENYWREMHEKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG +D Y + M      + +     P +      +++S + SY
Sbjct: 289 YGEIRTPIILNEKLWHQSGHWDHYKENM-YFTKIDGEDYAIKPMNCPGSILVYKSDLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ L  R E      G+MR R F   DA+ F    + +      +       
Sbjct: 348 RELPIRLGELGLVHRHEYSGALHGLMRVRNFTQDDAHIFMTKEQITSE-ILGVIKMIDNF 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E                   +          ++   
Sbjct: 407 YSLFGFEYF-VELSTRPEDSMGSDE-----------------EWEAATNGLVKALNEAGL 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H           +    R  + G I     +       ++ G
Sbjct: 449 EYKINEGDGAFYGPKIDFHL----------RDCLGRTWQCGTI-QLDFQMPERFDLSYVG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H          G++     ++   + G    W   +AP ++ ++NI  +     +
Sbjct: 498 PDGEKHRPVMAHRVIFGSIERFIGILTEHYAGAFPTW---LAPVQVKIMNITDN---QVE 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C++I   L++ G  V  D   E+IG +   A L   P  +++G K ++++ + ++ R  
Sbjct: 552 YCKEIQKALNESGIRVELDLRNEKIGYKIREAQLQKIPYMLVLGDKEMNENTIAVRARKQ 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M L++ I          
Sbjct: 612 GDLGAMKLDDFIAMVRKEIDEK 633


>gi|307611592|emb|CBX01274.1| threonyl tRNA synthetase [Legionella pneumophila 130b]
          Length = 637

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 142/440 (32%), Gaps = 40/440 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD       L L        + G+  W P G      +   +R      
Sbjct: 230 EYLFRLEEAEKRDHRKLGKALDLF--HFQDIAPGMVFWHPKGWTIYQELEHYMRNRLVDF 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P L    LW +SG + ++  EM  + +  ++     P        I+   +KS
Sbjct: 288 GYQEIRTPQLVDRSLWEKSGHWANFRDEMF-VTETENRHYAVKPMSCPCHVQIYNHGLKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R E      G+MR R  +  DA+ F    +        M      
Sbjct: 347 YRDLPLRLSEFGNCHRCEPSGALHGLMRVRNMVQDDAHIFCTEDQIQSE-VAMMLELVQS 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   I  R    P     S +    A+T        ++      P E        
Sbjct: 406 VYKDFGFTEIKYRLALRPEKRVGSDDVWDKAETALKLAMQGRNIEWVDAPGE-------- 457

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y    +     L D L    +     ++                A++ 
Sbjct: 458 ---------GAFYGPKIEC---SLSDCLGRIWQCGTIQVDFSMPARL--------EASYV 497

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG       +    +G+      ++   + GK  +W   V    +++       +   
Sbjct: 498 AEDGSKQTPVMLHRAILGSFERFMGILIEHYAGKLPLWLSPVQAVVLTI------SEKQN 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   L K G    +D   E+IG +     L   P  ++VG K V + +V ++ R 
Sbjct: 552 EYAEKVRKTLQKRGVRANFDLRNEKIGFKIREHTLQKIPYLLVVGDKEVENCQVAVRTRD 611

Query: 423 TGIREDMSLEEVINYASHRF 442
                 M+++ + +  +   
Sbjct: 612 GIDLGVMTIDTICDTLTQEI 631


>gi|326201674|ref|ZP_08191545.1| threonyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325988274|gb|EGD49099.1| threonyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 635

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 157/443 (35%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L    I     G   ++P G    + +    R E  + 
Sbjct: 230 EYLFRMEEAKKRDHRKLGRELDLFD--ILDEGPGFPFFMPKGMVLRNLLEDFWRSEHKKA 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + + +LW+ SG +D+Y + M  + D +++     P +      +F+  + S
Sbjct: 288 GYQEIKTPVILNKELWLRSGHWDTYKENMYTV-DIDEQEYAIKPMNCPGGILVFKRKLHS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ L  R EL     G+MR R F   DA+ F    + +        ++ + 
Sbjct: 347 YRDLPQRMGELGLVHRHELSGALHGLMRVRCFTQDDAHIFMTPEQITDEIV--GVINLID 404

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            F+++      +   + P     S E                   +          D   
Sbjct: 405 DFYKVFGFKYNVELSTRPENSIGSDE-----------------MWELSTQGLRKALDLKG 447

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              ++ E   A Y    D H E   DS+    +     +++                ++ 
Sbjct: 448 IKYTVNEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLDMNLP--------ERFDLSYI 496

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG+ H    +     G++    A++    +     +P  ++P ++ ++ +        
Sbjct: 497 GPDGEKHRPVMIHRVVFGSIERFIAILT---EHFAGAFPAWLSPVQVKILPLVDKHH--- 550

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++   L      V  D   E+IG +   A +   P  +++G K +    V ++ R 
Sbjct: 551 DYAFEVKKLLEAENVRVEVDSRNEKIGYKIREAQMDKTPYMLVIGDKELEGRLVSVRSRR 610

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G    +S E+          N 
Sbjct: 611 DGDLGAISPEQFAEKILDEIKNK 633


>gi|186476316|ref|YP_001857786.1| threonyl-tRNA synthetase [Burkholderia phymatum STM815]
 gi|238691316|sp|B2JJJ7|SYT_BURP8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|184192775|gb|ACC70740.1| threonyl-tRNA synthetase [Burkholderia phymatum STM815]
          Length = 635

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 144/441 (32%), Gaps = 41/441 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    +   S G+  W P G      V   +R   N  G
Sbjct: 231 YLHMLEEAEKRDHRKLGKQLDLF--HMQDESPGMVFWHPRGWTLWQQVEQYMRRRVNEAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y   M    +   +     P +      +F   ++SY
Sbjct: 289 YLEIKTPMIMDRSLWEASGHWQNYRDNMFT-TESEKRDYAIKPMNCPGHVQVFNHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 348 RDLPLRYAEFGSCHRNESSGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFNT-LAMSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  ++ ++    P     + E    A+ G      +       +P E         
Sbjct: 407 YKDFGFDNVEIKLSLRPDARAGTDEIWDRAEQGLRDALTACGVTWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A F  
Sbjct: 458 --------GAFYGPKVEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEFVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G    W   +    +++       +   +
Sbjct: 499 EDNSRRRPIMLHRAIVGSMERFLGILIEHHAGAMPAWLAPMQVVVMNIA------ESQAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAQSLAQSLQKQGVRVEADLRNEKISYKIREHTLEKVPYLLVVGDKERDAQTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSN 444
                M ++            
Sbjct: 613 IDLGVMPVDAFSERLRQDVQT 633


>gi|291614198|ref|YP_003524355.1| threonyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
 gi|291584310|gb|ADE11968.1| threonyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
          Length = 637

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 78/439 (17%), Positives = 144/439 (32%), Gaps = 40/439 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y + + +   RD      +L L    +   + G+  W P G      +   +R      G
Sbjct: 231 YLVRLEEAEKRDHRKLGKQLDLF--HMQDEAPGMVFWHPKGWAMWQVIEQYMRAVYRDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG ++ Y   M    +         P +      +F + ++SY
Sbjct: 289 YHEIRCPQIIDRVLWEKSGHWEHYKANMFT-TESEKHDYAIKPMNCPGHVQVFNADLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + +     R+E      G+MR R F+  D + F  T E  +          L++
Sbjct: 348 RELPLRYGEFGSCHRNEPSGGLHGLMRVRGFVQDDGHIFC-TEEQIESEVKAFNTLVLKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++    P G   S E                   D    +          
Sbjct: 407 YKDFGFHDVVVKLALRPEGRVGSDE-----------------IWDKSENALRAALRASGM 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   + D++  + +     ++       G        A F  
Sbjct: 450 DWEELPGEGAFYGPKIEFH---IKDAIGRSWQCGTIQVDFSMPGRLG--------AEFVD 498

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D      V +    +G++     ++  +H G   +W   V    +++       Q   +
Sbjct: 499 EDNTRKVPVMLHRAILGSLERFIGILVENHAGALPLWLAPVQMVVMNI------SQAQEE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L   G  V  D   E+I  +     L   P Q+I+G K V+   V ++ R  
Sbjct: 553 YAGKVAQTLRASGFRVQSDLRNEKITYKIREHSLQKLPYQLIIGDKEVAAGLVAVRSRTG 612

Query: 424 GIREDMSLEEVINYASHRF 442
                MS++ +I       
Sbjct: 613 EDLGQMSVDALIQRLQAEL 631


>gi|312881548|ref|ZP_07741334.1| threonyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370825|gb|EFP98291.1| threonyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 642

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 136/443 (30%), Gaps = 42/443 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   +RE+      
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFVREKLTEYDY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLIMDRVLWERSGHWDKYADAMFT-TASENRDYALKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQEEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E                   D    +     + +   
Sbjct: 410 ETFGFSNIAVKLSTRPEKRVGSDE-----------------IWDESEQALKQSLEAMDIP 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L D L    +     ++       G        AT+   
Sbjct: 453 YEIQEGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFNLPGRLG--------ATYVDE 501

Query: 306 DGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           + +     M    I     R +  +IE  +           A                 D
Sbjct: 502 NNERQVPVMIHRAILGSLERFIGILIEEYYGFFPTWLSPEQAIIMNIT-------DKQSD 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R  
Sbjct: 555 YVHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKG 614

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                  +++ ++Y     S+ +
Sbjct: 615 KDLGKFKVDDFVSYIQDEISSRK 637


>gi|238927112|ref|ZP_04658872.1| threonine--tRNA ligase [Selenomonas flueggei ATCC 43531]
 gi|238885092|gb|EEQ48730.1| threonine--tRNA ligase [Selenomonas flueggei ATCC 43531]
          Length = 639

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 160/442 (36%), Gaps = 42/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    RE   R G
Sbjct: 233 YLHMLEEAAKRDHRKLGKELDLFS--LHEEGPGFPFFHPNGMALRNALLDYWREVHRRYG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + S  LW  SG +  Y + M    + +D+     P +      ++RS + SY
Sbjct: 291 YQEISTPVILSRKLWETSGHWFHYRENMYT-TEIDDEDYAIKPMNCPGCMLVYRSQLHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+ R R F   DA+   +TP+  +         +  +
Sbjct: 350 RDLPLRLAELGLVHRHELSGALHGLFRVRNFTQDDAH-LFVTPDQIEGEIQHTIDLFDEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL        + P     + E                   +          D+   
Sbjct: 409 YRTFGLTY-KAELSTRPEDSMGTDE-----------------MWELATNGLQKALDNRGL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+    +     +++     F          T+ G
Sbjct: 451 DYVVNEGDGAFYGPKIDFH---LRDSIGRTWQCGTIQLDMSLPEKFD--------LTYVG 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++    +     +P  +AP ++ ++ I    +   +
Sbjct: 500 EDGEKHRPVMLHRVVYGSIERFIGILI---ENYAGAFPVWMAPVQVRILPIT---ERHAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+Y ++   G  V  D+  E+ G +   + +   P  ++VG +      V ++    
Sbjct: 554 YAEKLYKKMFDCGIRVEIDERNEKTGYKIRESQVKKTPYTIVVGDQEQESGTVAMRKYGE 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS ++ I     + +  
Sbjct: 614 KNSTTMSSDDFIALVQEKIATR 635


>gi|82701621|ref|YP_411187.1| threonyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
 gi|123727233|sp|Q2YBS6|SYT_NITMU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|82409686|gb|ABB73795.1| Ser-tRNA(Thr) hydrolase [Nitrosospira multiformis ATCC 25196]
          Length = 638

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 152/444 (34%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
             +L  L+E   RD      +L L    + + + G+  W P G      V   +R+    
Sbjct: 229 NAYLRRLEEAEKRDHRKLGKQLGLF--HLQEEAPGMVFWHPKGWVVWQQVEQYMRDIFRN 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P++    LW  SG ++++ + M  +    D+     P +      +F+  +K
Sbjct: 287 NGYLEIRTPSVLDKGLWERSGHWENFRENMF-VTQAEDREFSVKPMNCPGHVQVFKQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F    +    +         
Sbjct: 346 SYRDLPLRLAEFGSCHRNEPSGALHGIMRVRAFTQDDAHIFCTESQVQDEAVQF-IDLLQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           ++++  G   I ++  + P     S E                   D    +  +  +  
Sbjct: 405 KVYNDFGFNDILVKLSTRPAKRVGSEE-----------------QWDKAEEALRSALNHK 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             +  +     A Y    +     L DS+    +     ++       G        A F
Sbjct: 448 NLIWELQPGEGAFYGPKIEF---SLKDSIGRIWQCGTLQLDFSMPERLG--------AEF 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G++     ++  +H G   +W        +++       +  
Sbjct: 497 VAEDNSRQIPVMLHRAILGSLERFIGILIENHAGALPLWLSPDHAVVLNI------SEGQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L + G   + D   E+I  +     L   P Q+IVG K V+  +V ++ R
Sbjct: 551 ADYAREVTEELRRAGIRAYADLRNEKITYKIREHSLQKLPYQIIVGDKEVAAQRVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M+L  +++         
Sbjct: 611 SGSDLGQMTLPALVDRLKEEIRTR 634


>gi|319943475|ref|ZP_08017757.1| threonine--tRNA ligase [Lautropia mirabilis ATCC 51599]
 gi|319743290|gb|EFV95695.1| threonine--tRNA ligase [Lautropia mirabilis ATCC 51599]
          Length = 636

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 150/442 (33%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L        + G+  W P G      +   IRE+  + G
Sbjct: 231 YLHMLEEAEKRDHRKLGKDLDLF--HTQAEAPGMVFWHPRGWTIWQRIEQYIREKYQKNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +   DLW  SG +D+Y + M   ++   +     P +      +F + ++SY
Sbjct: 289 YQEVRCPQILDVDLWKRSGHWDNYKENMF-FSESEKREYAVKPMNCPGHVQLFNASLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F   D + F  T E  +          + +
Sbjct: 348 RDLPLRYAEFGSCHRNEPSGALHGIMRVRGFTQDDGHIFC-TEEQVEAEVTAFHQQAMAV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++    P     + E    A+        + D     +P E         
Sbjct: 407 YRDFGFTDVSVKLALRPTQRLGTDEAWDRAENALRAALSACDVAWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   L DS+    +V     +              + A +  
Sbjct: 458 --------GAFYGPKIEYH---LKDSIGRAWQVGTIQYDP--------MMPERLDAEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G    W   V    +++           D
Sbjct: 499 EDNSRRRPIMLHRAIVGSMERFIGMLIEHHAGAMPTWLAPVQVAVLTVT------DTAAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E I  RL K G  V  D  G++IG +     L   P  V+VG K      + ++ R  
Sbjct: 553 YAEDIRQRLIKQGFRVISDLRGDKIGYKIREHSLQKIPYLVVVGEKDRQAGTLAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS E   +  + + +  
Sbjct: 613 KDLGSMSFEGFASLLAQQVAEK 634


>gi|302878338|ref|YP_003846902.1| threonyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
 gi|302581127|gb|ADL55138.1| threonyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
          Length = 637

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 150/443 (33%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E   RD      +L L    + +   G+  W P G      +   +R +   
Sbjct: 229 ESYLHRLEEAEKRDHRKLGRQLDLF--HMQETMPGMVFWHPKGWTLWQEIEQYMRAKFRE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW +SG +++Y   M       ++     P +      I+   + 
Sbjct: 287 HDYQEVRTPAIMDKTLWEKSGHWENYRDNMFT-TASENRDYAVKPMNCPGHVQIYNHGLH 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F  T    +   +   V   
Sbjct: 346 SYRDLPLRLAEFGSCHRNESSGSLHGLMRVRGFTQDDAHIFC-TEAQVESEVSNFIVMLN 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G  ++ ++  + P     S E    A+ G               P E       
Sbjct: 405 EVYRDFGFDNVIVKLSTRPEKRVGSDETWDKAEAGLAAALKQNRLDYEVQPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    +     L DSL    +     ++    F    + S    A F
Sbjct: 458 ----------GAFYGPKVEF---TLKDSLDRMWQCGTIQLD----FNLPVRLS----AEF 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G+M     ++   H G   +W   V    +++       Q  
Sbjct: 497 VDEDNTRKPPVMLHRAILGSMERFIGILIEHHAGAFPMWLSPVQTVLMNI------SQAQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  ++I   L++ G  V  D   E+I  +     L   P Q+IVG K VS   + ++ R
Sbjct: 551 EEYAKEIGQILARAGIRVQLDLRNEKITYKIREHSLQKLPYQLIVGDKEVSGRLIAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  M+++ +I        +
Sbjct: 611 SGEDLGQMTIDALIERFKAEIKS 633


>gi|188586439|ref|YP_001917984.1| Ser-tRNA(Thr) hydrolase, threonyl-tRNA synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|229558041|sp|B2A5P2|SYT_NATTJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|179351126|gb|ACB85396.1| Ser-tRNA(Thr) hydrolase, threonyl-tRNA synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 636

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 165/448 (36%), Gaps = 44/448 (9%)

Query: 2   RRSKY--FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   ++  L+E   R+      +L L +   H+ + G   +   G   ++ +    R
Sbjct: 226 KKSQLEEYIQRLEEAKKREHRKLGKELDLFS--FHEEAPGSPFFHNNGMIVINELIDFWR 283

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            E  + G  E+S P + +  LW  SG +D + + M    + +D+     P +      ++
Sbjct: 284 REHRKAGYQEISTPIILNRGLWERSGHWDHFQENM-YFTEIDDEDFAVKPMNCPGAMLVY 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +++ SYR+ P    ++    R EL     G++R+R F   DA+ F L P   +     +
Sbjct: 343 NNNMYSYRDFPLRVAELGKVHRHELSGALHGLLRARSFTQDDAHIFML-PSQVEEELENV 401

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                R +   G                      V   T   +   S +  D  I +  +
Sbjct: 402 INLVDRFYSVFGFNYY------------------VELSTKPEKAMGSDEIWDRAINALKS 443

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +       + E   A Y    D    +L D++  + + S   ++    F    ++   
Sbjct: 444 VLEKRGIKYIVNEGDGAFYGPKIDF---QLEDAIGRSWQCSTIQLD----FLLPERFD-- 494

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              T+ G DG+ H    +     GA+    A++   ++GK  +W        I +     
Sbjct: 495 --LTYIGEDGQKHRPVMIHRVIYGAIERFFALLIEHYEGKFPLWLAPRQAVIIPIA---- 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  + I  +L   G     D   E+IG +   A L   P  +IVG   V +  V
Sbjct: 549 --DRHMEYGKDITKQLESEGIRADLDQRNEKIGYKIRDAQLKKVPYMLIVGDDEVENKTV 606

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ R  G     S+ E+++       +
Sbjct: 607 SVRTREDGDIGSKSVAELVDEIKVEIDD 634


>gi|172087694|ref|YP_204597.2| threonyl-tRNA synthetase [Vibrio fischeri ES114]
 gi|197335357|ref|YP_002156016.1| threonyl-tRNA synthetase [Vibrio fischeri MJ11]
 gi|171902287|gb|AAW85709.2| threonyl-tRNA synthetase [Vibrio fischeri ES114]
 gi|197316847|gb|ACH66294.1| threonyl-tRNA synthetase [Vibrio fischeri MJ11]
          Length = 642

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 143/441 (32%), Gaps = 40/441 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            + + +   RD      +L L    + Q + G+  W   G      +   +RE+  +   
Sbjct: 233 LIRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFVREKLTQYDY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y + M       ++     P +      IF   +KSYR
Sbjct: 291 QEVKGPLMMDRVLWERSGHWDKYAEAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 350 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHVFC-TEAQVQQEVKSCIEMVYDTY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S E    A++                       + +   
Sbjct: 409 QTFGFDNIVVKLSTRPEQRVGSDEMWDRAES-----------------DLKLALESMEIP 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L D L    +     ++       G        AT+ G 
Sbjct: 452 YEIQEGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFALPERLG--------ATYVGE 500

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D + H    +    +G++     ++   + G    W        + +           D 
Sbjct: 501 DNERHTPVMIHRAILGSLERFIGILIEDYAGFFPTWLAPEQAIVMGIT------DKQADY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++I  +L K G  V  D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 555 VQEIAKKLQKNGFRVKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGK 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
                 +++ + +     S  
Sbjct: 615 DLGKFKIDDFVAFLQQEVSAR 635


>gi|225025724|ref|ZP_03714916.1| hypothetical protein EIKCOROL_02627 [Eikenella corrodens ATCC
           23834]
 gi|224941505|gb|EEG22714.1| hypothetical protein EIKCOROL_02627 [Eikenella corrodens ATCC
           23834]
          Length = 635

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 80/439 (18%), Positives = 155/439 (35%), Gaps = 39/439 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R E +  G
Sbjct: 233 YITRIEEAEKRDHRRLGKQLDLF--HLQDEAPGMVFWHPRGWTLWQTIEQHMRRELDAAG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG + +Y   M        +     P +      IF   ++SY
Sbjct: 291 YREVKTPQILDKTFWEKSGHWANYKDNMFT-TSSEKRDYAVKPMNCPGHVQIFNHGLRSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    + ++ +        ++I
Sbjct: 350 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIAEETRAFN-QLVMKI 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G + + ++    P     + E    A+ G      +       +P E         
Sbjct: 409 YKQFGFEHVSIKLSLRPEQRAGTDETWDKAEQGLRDALTACGVQWEELPGE--------- 459

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++       G +Y          
Sbjct: 460 --------GAFYGPKVEYH---IKDALGRSWQCGTIQLDFVLPERLGAEY-------VTE 501

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +G+   V +    +G++     ++   H G   +W   V    +++       +   D 
Sbjct: 502 DNGRARPVMLHRAILGSLERFIGILIEEHAGSFPLWLAPVQMVVMNIT------EKQADY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           C ++  +L   G     D   E+IG +      + +P QV+VG K + + +V ++ R   
Sbjct: 556 CLEVVNKLKAAGLRAEADLRNEKIGYKIRDNSQMRYPYQVVVGDKEMENGQVAVR-RKGE 614

Query: 425 IREDMSLEEVINYASHRFS 443
               M +EE I       +
Sbjct: 615 DLGSMQIEEFIARLQQELA 633


>gi|225873756|ref|YP_002755215.1| threonine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
 gi|259516262|sp|C1F9K5|SYT_ACIC5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225794268|gb|ACO34358.1| threonine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 681

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 156/443 (35%), Gaps = 38/443 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F  + +   RD  +   +L L +  I + +  G+  W P G      +   +REE  R G
Sbjct: 269 FARLEEIAKRDHRVLGKQLDLFS--IQEIAGAGLIFWHPKGAMIRKIMEDWMREECIRRG 326

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +    LW  SG    Y + M    + +D      P +      I++S  +SY
Sbjct: 327 YDLVYTPHVMRVQLWKTSGHEGFYSQNMFTPMELDDAEYRLKPMNCPGHILIYKSQPRSY 386

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + ++   +R E      G++R R F   DA+ F    +               +
Sbjct: 387 RDLPVRYAELGNVYRYERSGTMHGLLRVRGFTQDDAHIFCTPEQIEDEVVAC-IDFAQSV 445

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFDDII 243
               G     +   +               D  + + +  S D  +  I S  +      
Sbjct: 446 LTTFGFMDFQVELST--------------WDPNDRKNYAGSDDKWNLAISSLESALTRKG 491

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                +    A Y    D+   KL D L    ++S    +    F    ++       + 
Sbjct: 492 IAYKTIAGEAAFYGPKIDI---KLVDVLGRLWQLSTVQFD----FNLPARF----ELEYV 540

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG+ H    +     G++     V+    +     +P  +AP +I L+ I    +   
Sbjct: 541 GEDGERHQPVMVHRALYGSVERFFGVLI---EHYAGAFPLWLAPVQIGLVPI---SERHL 594

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              EK+  +L   G  V  D   E++ ++     L  FP  +I+G K      V ++ R 
Sbjct: 595 AYAEKVQQQLEAAGFRVELDRRNEKMNAKIRDFTLQKFPYVLIMGDKEAEAGAVSVRTRG 654

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G +  + L+E I  A+      
Sbjct: 655 KGDQGSLPLDEFIGRATTLIDTK 677


>gi|332968643|gb|EGK07696.1| threonine--tRNA ligase [Psychrobacter sp. 1501(2011)]
          Length = 644

 Score =  270 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 139/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + S G+  W P G      +   +R+ Q   G
Sbjct: 231 YITRMEEAEKRDHRKIGRQLNLF--HMQEQSPGMVFWHPNGWTIYQVLEQYMRKVQKDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG + +Y   M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQIVDRSLWEKSGHWGNYATNMFT-TSSESRDYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T    +          L +
Sbjct: 348 RELPIRLAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TQAQIQEEVANFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     + E                   D    +     D    
Sbjct: 407 YKDFGFDQIDMKLSTRPEKRVGTDE-----------------SWDIAEKALAEALDSSGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    +     L DSL    +     ++              + A F  
Sbjct: 450 EWEYLPGEGAFYGPKIEF---SLKDSLGRVWQCGTIQVDPNMP--------ERLDAEFVN 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    + +    +G+      ++   + G   +W        +++           +
Sbjct: 499 ENNERETPIMLHRAILGSFERFLGMLIEHYAGWMPVWLAPQQVVVMNIT------DKQSE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           AC+ + A L   G     D   E+IG +     L   P  +++G K V   +V ++ R  
Sbjct: 553 ACQNVVAELQNAGLRAISDLRNEKIGFKIRERTLERIPYMLVLGDKEVESGQVNVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+ + I          
Sbjct: 613 ENLGVMSVADFIELVQKAVDQK 634


>gi|54295556|ref|YP_127971.1| threonyl tRNA synthetase [Legionella pneumophila str. Lens]
 gi|73919803|sp|Q5WT82|SYT_LEGPL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53755388|emb|CAH16884.1| Threonyl tRNA synthetase [Legionella pneumophila str. Lens]
          Length = 637

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 142/440 (32%), Gaps = 40/440 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD       L L        + G+  W P G      +   +R      
Sbjct: 230 EYLYRLEEAEKRDHRKLGKALDLF--HFQDIAPGMVFWHPKGWTIYQELEHYMRNRLVDF 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P L    LW +SG + ++  EM  + +  ++     P        I+   +KS
Sbjct: 288 GYQEIRTPQLVDRSLWEKSGHWANFRDEMF-VTETENRHYAVKPMSCPCHVQIYNHGLKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R E      G+MR R  +  DA+ F    +        M      
Sbjct: 347 YRDLPLRLSEFGNCHRCEPSGALHGLMRVRNMVQDDAHIFCTEDQIQSE-VAMMLELVQS 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   I  R    P     S +    A+T        ++      P E        
Sbjct: 406 VYKDFGFTEIKYRLALRPEKRVGSDDVWDKAETALKLAMQGRNIEWVDAPGE-------- 457

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y    +     L D L    +     ++                A++ 
Sbjct: 458 ---------GAFYGPKIEC---SLSDCLGRIWQCGTIQVDFSMPARL--------EASYV 497

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG       +    +G+      ++   + GK  +W   V    +++       +   
Sbjct: 498 AEDGSKQTPVMLHRAILGSFERFMGILIEHYAGKLPLWLSPVQAVVLTI------SEKQN 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   L K G    +D   E+IG +     L   P  ++VG K V + +V ++ R 
Sbjct: 552 EYAEKVRKTLQKRGVRANFDLRNEKIGFKIREHTLQKIPYLLVVGDKEVENCQVAVRTRD 611

Query: 423 TGIREDMSLEEVINYASHRF 442
                 M+++ + +  +   
Sbjct: 612 GIDLGVMTIDTICDTLTQEI 631


>gi|220928797|ref|YP_002505706.1| threonyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|219999125|gb|ACL75726.1| threonyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 635

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 155/443 (34%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L    I     G   ++P G    + +    R E  + 
Sbjct: 230 EYLFRIEEAKKRDHRKLGRELDLFD--ILDEGPGFPFFMPKGMVLRNLLEDYWRSEHKKA 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + + +LW+ SG +D+Y   M  +A  +++     P +      +F+  + S
Sbjct: 288 GYQEIKTPVILNKELWLRSGHWDNYKNNMYTVA-IDEQDCAIKPMNCPGGILVFKRKLHS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ L  R EL     G+MR R F   DA+ F    + +      +      
Sbjct: 347 YRDLPQRMGELGLVHRHELSGALHGLMRVRCFTQDDAHIFMTPEQITDE-VTGVINLIDD 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            +   G K   +   + P     S E                   +          D+  
Sbjct: 406 FYSVFGFKYN-VELSTRPEKSIGSDE-----------------MWELSTAGLKKALDEKG 447

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +I +   A Y    D H E   DS+    +     +++                ++ 
Sbjct: 448 IKYTINKGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLDMNLP--------ERFDLSYI 496

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG+ H    +     G++    A++     G    W   ++P ++ ++ +        
Sbjct: 497 GPDGEKHRPVMVHRVVFGSIERFIAILTEHFAGAFPTW---LSPVQVKILPLVDKH---Y 550

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++   L      V  D   E+IG +   A +   P  +++G K +    V ++ R 
Sbjct: 551 DYAYEVKKLLEADDIRVEVDTRNEKIGYKIREAQMDKTPYMLVIGDKELEGRLVSVRSRK 610

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G    ++ E+     S+   N 
Sbjct: 611 DGDLGTITPEQFAEKISNEIKNK 633


>gi|187477891|ref|YP_785915.1| threonyl-tRNA synthetase [Bordetella avium 197N]
 gi|123738749|sp|Q2L2M5|SYT_BORA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115422477|emb|CAJ49002.1| threonyl-tRNA synthetase [Bordetella avium 197N]
          Length = 650

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 144/446 (32%), Gaps = 41/446 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E  R D       L L          G+  W P G      V   +R      G
Sbjct: 236 YLHMLEEAERRDHRKIGRDLDLF--HFQDEGPGLIFWHPKGWTLWQQVEQYMRAVYRDNG 293

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y + M    +  ++     P +      IF + + SY
Sbjct: 294 YQEVKAPQILDLSLWKKTGHWDNYRENMFT-TESENRVYGLKPMNCPGHVQIFNAGLHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + +     R+E      G+MR R F   D + F    +              ++
Sbjct: 353 RELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIFCTEDQLQDEC-ADFTALLQKV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   +  +  + P     S E    A+T   +            P E         
Sbjct: 412 YRDFGFTEVLYKVATRPEKRIGSDEIWDKAETALMESLRRTGCEFEISPGE--------- 462

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D++  + +     ++       G        A +  
Sbjct: 463 --------GAFYGPKIEY---TLKDAIGRHWQCGTIQVDFSMPVRLG--------AEYVD 503

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G++     ++  +H G    W   V      +       +   +
Sbjct: 504 QNDQRRAPVMLHRAILGSLERFIGMLIENHAGAMPPWLAPVQAVVCCI------SEPSAE 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              KI   L K G  V  D  GE+I  +     L   P  ++VG K   +  V ++    
Sbjct: 558 YAAKITQSLKKQGFRVQADLRGEKITRKIREHSLQKVPYILVVGDKEAQNGTVAVRGLGG 617

Query: 424 GIREDMSLEEVINYASHRFSNNRPVL 449
                +  ++ +   +   ++ R V+
Sbjct: 618 LDLGAIPFDDFVARLNEDVASRRNVV 643


>gi|149926877|ref|ZP_01915136.1| threonyl-tRNA synthetase [Limnobacter sp. MED105]
 gi|149824429|gb|EDM83647.1| threonyl-tRNA synthetase [Limnobacter sp. MED105]
          Length = 635

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 149/442 (33%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      +L L    +   + G+  W P G      V   +R+     G
Sbjct: 231 YLHRLEEAEKRDHRKLGKQLDLF--HMQDEAPGLVFWHPKGWALWQQVEQYMRKVYVDGG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y + M    +   +     P +     ++F+S ++SY
Sbjct: 289 YQEIRCPQILDRKLWEKSGHWDNYKENMFT-TESEKRDYALKPMNCPGHIEVFKSDLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F   D + F  T +  +    K     +++
Sbjct: 348 RDLPMRYGEFGACHRNESSGALHGIMRVRGFTQDDGHIFC-TEDQVQEEVTKFNQVAMQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     + E                   D    S          
Sbjct: 407 YADFGFNEINVKLALRPEARLGTDE-----------------TWDKAEDSLRAALKACGV 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             + +    A Y    + H   + DS+  + +     ++       G        A +  
Sbjct: 450 QWTELPGEGAFYGPKIEYH---MKDSIGRSWQCGTIQVDFQLPGRLG--------AEYVA 498

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D      V +    +G+M     ++  +H G   +W   V     ++       +   +
Sbjct: 499 EDNSRRVPVMLHRAIVGSMERFIGILIENHAGAMPVWLSPVQVVVATIT------EAHNE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L K G  V  D   E+I  +     +   P   ++G      ++V ++ R  
Sbjct: 553 YAHNVVQMLKKQGIRVEADLRNEKINRKIREHTMQKTPYIAVIGDAERDANQVAVRLRGN 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + +++ I       ++ 
Sbjct: 613 ENLGSLPVDDFIQRLLGEINSR 634


>gi|88800311|ref|ZP_01115877.1| threonyl-tRNA synthetase [Reinekea sp. MED297]
 gi|88776888|gb|EAR08097.1| threonyl-tRNA synthetase [Reinekea sp. MED297]
          Length = 643

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 146/439 (33%), Gaps = 40/439 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            L + +   RD      KL L    + + + G+  W P G      +   +R +Q++ G 
Sbjct: 233 LLFLEEAAKRDHRKIGKKLDLF--HLQEDAPGMVFWHPNGWTMYQVIEQYMRRKQHQHGY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW +SG +D +G +M        +     P +      +F   +KSYR
Sbjct: 291 QEIKTPMVVDRSLWEKSGHWDKFGDDMFT-THSESRDNAIKPMNCPCHVQVFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F+  DA+ F  T    +            ++
Sbjct: 350 DLPLRLAEFGSCHRNEASGALHGIMRVRGFVQDDAHIFC-TEGQIQSEVASFIGMLEEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           H  G     ++  + P     S E                   D    + +   +     
Sbjct: 409 HDFGFDDYILKLSTRPEQRVGSDE-----------------DWDRAEEALSEALNATGKE 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
            +I+    A Y    +     L DSL    +     ++                A +   
Sbjct: 452 WAILPGEGAFYGPKIEF---TLKDSLGRLWQCGTIQVDFSMPGRLD--------AQYVDE 500

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            G+      +    +G+      ++    +      P  +AP +  ++NI        + 
Sbjct: 501 HGERQTPVMLHRAIVGSFERFLGILI---EQYAGAMPPWLAPVQAMVLNIT---DAQAET 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + I   L   G     D   E+IG +     +   P  ++VG K V +  V ++ R   
Sbjct: 555 AQNIVKNLENQGFRAKADLRNEKIGFKIREHTIQRIPYLLVVGDKEVENGTVAVRTREGQ 614

Query: 425 IREDMSLEEVINYASHRFS 443
               M+L E  +      +
Sbjct: 615 DLGVMTLAEFSDRIQSDIA 633


>gi|254498720|ref|ZP_05111436.1| threonyl tRNA synthase [Legionella drancourtii LLAP12]
 gi|254352048|gb|EET10867.1| threonyl tRNA synthase [Legionella drancourtii LLAP12]
          Length = 648

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 137/442 (30%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L        + G+  W P G      +   +R      G
Sbjct: 240 YLFRIEEAEKRDHRKLGKTLELF--HFQDIAPGMVFWHPKGWTIYQELERYMRARLADFG 297

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW +SG + ++  EM  + + +++     P +      ++   +KSY
Sbjct: 298 YQEIKTPQLVDKVLWEKSGHWANFRDEMF-VTETDNRHYAVKPMNCPCHIQVYNQGLKSY 356

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +     R E      G+MR R  +  DA+ F    +      + M      +
Sbjct: 357 RDLPLRFSEFGNCHRCEPSGSLHGLMRVRNMVQDDAHIFCTEDQIQSE-VDMMLQLVQSV 415

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  R    P                        D  D    +      D   
Sbjct: 416 YTDFGFNEIKYRLALRPEKR-----------------VGGDDVWDKAEAALKQAMKDRTI 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++                A++  
Sbjct: 459 EWVDAPGEGAFYGPKIEC---SLSDCLGRIWQCGTIQVDFSMPGRLD--------ASYIA 507

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +    +G+      ++   + GK  +W             +    +   D
Sbjct: 508 EDGSKQIPVMLHRAILGSFERFMGILIEHYAGKLPLW------LSPVQAAVLTISEKQND 561

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++   L K G    +D   E+IG +     L   P  +++G K V   +V ++ R  
Sbjct: 562 YAQQVTQILQKRGLRANFDLRNEKIGFKIREHTLQKVPYLLVIGDKEVESGQVAVRSREG 621

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M+++ V +  +   +  
Sbjct: 622 TDLGVMTIDTVCDTLTQEIAQK 643


>gi|114332291|ref|YP_748513.1| threonyl-tRNA synthetase [Nitrosomonas eutropha C91]
 gi|122313048|sp|Q0ADN4|SYT_NITEC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114309305|gb|ABI60548.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Nitrosomonas
           eutropha C91]
          Length = 635

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 149/442 (33%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      +L L    + + + G+  W P G      +   +R+   + G
Sbjct: 231 YLRRLEEAEKRDHRKLGKQLDLF--HMQEEAPGMVYWHPKGWAIWQQIEQYMRQVLAKNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG ++++ + M  + +   +     P +      +F   ++SY
Sbjct: 289 YVEIRTPQVLDISLWEKSGHWENFRENMF-ITESESRHYAIKPMNCPGHVQVFNHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +       K      ++
Sbjct: 348 RDLPLRLAEFGSCHRNEASGALHGLMRVRSFTQDDAHIFC-TEDQVLEEVTKFIDLLNQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++  + P     + E    A+         K+      P E         
Sbjct: 407 YIDFGFHENLIKLSTRPAQRVGTEEQWDRAEAALAAALNQKELNWELQPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L DSL    +     ++       G        A +  
Sbjct: 458 --------GAFYGPKIEF---TLKDSLGRKWQCGTLQLDFSMPARLG--------AGYIA 498

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  K   V +    +G+M     ++   H G   +W        +++       +   D
Sbjct: 499 EDNTKKIPVMLHRAILGSMERFIGILIEHHAGALPVWLSPDQVVVLNI------SRNQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + I   L +    V  D   E+I  +     L   P  ++VG K V +  V ++ R  
Sbjct: 553 YVQSITNELKQNDIRVSSDLRNEKISYKIREHSLQKVPYLIVVGDKEVENQTVTVRGRSN 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MSLE  +       +  
Sbjct: 613 HDHGAMSLEGFVTLIRKEMAER 634


>gi|330816669|ref|YP_004360374.1| Threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327369062|gb|AEA60418.1| Threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 635

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 147/445 (33%), Gaps = 41/445 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD    + +L L    + + S G+  W P G      V   +R   N 
Sbjct: 229 EAYLHMLEEAEKRDHRKLAKQLDLF--HMQEESPGMVFWHPKGWTLWQQVEQYMRRRVNE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW  SG + +Y + M    +   +     P +      +F   ++
Sbjct: 287 AGYLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    S        +
Sbjct: 346 SYRDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQFISESIAFN-ELAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   I ++    P     + E    A+ G      +       +P E       
Sbjct: 405 SVYKDFGFDQISIKLSLRPDQRAGTDETWDRAEQGLRDALTACGLEWEELPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   + D+L  + +     +++      G        A +
Sbjct: 458 ----------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMVLPERLG--------AEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G+M     ++   H G    W   V    +++       +  
Sbjct: 497 VAEDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPSWLAPVQVVVMNIA------ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +    +   L K G  V  D   E+I  +     L   P  ++ G K      V ++ R
Sbjct: 551 AEYVRSLSQSLQKQGLRVEADLRNEKISYKIREHTLEKVPYLLVAGDKEREAQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  M +E  +          +
Sbjct: 611 GGVDLGVMPVEAFVERLQQDLRAFK 635


>gi|317403269|gb|EFV83787.1| threonyl-tRNA synthetase [Achromobacter xylosoxidans C54]
          Length = 650

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 142/447 (31%), Gaps = 41/447 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E  R D      +L L        + G+  W P G      V   +R     
Sbjct: 234 EAYLHMLEEAERRDHRKIGRELDLF--HFQDEAPGLIFWHPKGWALWQQVEQYMRSVYRD 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +D+Y + M    +  ++     P +      IF + + 
Sbjct: 292 NGYQEVKAPQILDISLWKKTGHWDNYRENMFT-TESENRVYGLKPMNCPGHVQIFNAGLH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + +     R+E      G+MR R F   D + F    +              
Sbjct: 351 SYRELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIFCTEEQLQDEC-ADFTALLQ 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   +  +  + P     S E                   D    +        
Sbjct: 410 KVYRDFGFTEVLYKVATRPEKRIGSDE-----------------VWDTAEQALMESLRRT 452

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I     A Y    +     L D++  + +     ++       G        A +
Sbjct: 453 GCEFEISPGEGAFYGPKVEY---TLKDAIGRHWQCGTIQVDFSMPVRLG--------AEY 501

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +      +    +G++     ++  +H G    W   V      +       +  
Sbjct: 502 VDQNDQRRPPVMLHRAILGSLERFIGMLIENHAGAMPPWLAPVQAVVCCI------SEPS 555

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   +I   L K G  V  D  GE+I  +     L   P  ++VG K   +  V ++  
Sbjct: 556 ADYAAEITQSLKKQGFRVESDLRGEKITRKIREHSLQKVPYILVVGDKEKQNGTVAVRGL 615

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPV 448
                  ++ ++ +   S   S  R V
Sbjct: 616 GGLDLGAIAFDDFVARLSEDVSTRRDV 642


>gi|33592589|ref|NP_880233.1| threonyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|33596580|ref|NP_884223.1| threonyl-tRNA synthetase [Bordetella parapertussis 12822]
 gi|33601133|ref|NP_888693.1| threonyl-tRNA synthetase [Bordetella bronchiseptica RB50]
 gi|81425212|sp|Q7VY64|SYT_BORPE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81427196|sp|Q7W912|SYT_BORPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81431262|sp|Q7WKF7|SYT_BORBR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33572235|emb|CAE41786.1| threonyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|33573281|emb|CAE37262.1| threonyl-tRNA synthetase [Bordetella parapertussis]
 gi|33575568|emb|CAE32646.1| threonyl-tRNA synthetase [Bordetella bronchiseptica RB50]
 gi|332382006|gb|AEE66853.1| threonyl-tRNA synthetase [Bordetella pertussis CS]
          Length = 649

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 147/445 (33%), Gaps = 41/445 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E  R D      +L L        + G+  W P G      V   +R+     G
Sbjct: 236 YLHMLEEAERRDHRKIGRELDLF--HFQDEAPGLIFWHPKGWALWQQVEQYMRKVYQDNG 293

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y + M    +  ++     P +      IF + + SY
Sbjct: 294 YQEVKAPQILDLTLWKKTGHWDNYRENMFT-TESENRVYGLKPMNCPGHVQIFNAGLHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + +     R+E      G+MR R F   D + F    +              ++
Sbjct: 353 RELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIFCTEDQLQDECAAFT-ALLQKV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   +  +  + P     S E    A+T   +            P E         
Sbjct: 412 YKDFGFTEVLYKVATRPEKRIGSDEIWDKAETALMESLRRTGCEFEISPGE--------- 462

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D++  + +     ++       G        A +  
Sbjct: 463 --------GAFYGPKVEY---TLKDAIGRHWQCGTIQVDFSMPVRLG--------AEYVD 503

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +      +    +G++     ++  +H G    W   +      +       +   +
Sbjct: 504 QNDQRRPPVMLHRAILGSLERFIGMLIENHAGAMPPWLAPLQAVVCCI------SEHSAE 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I   L K G  V  D  GE+I  +     L   P  ++VG K + +  V ++    
Sbjct: 558 YAAQITQSLKKQGFRVQADLRGEKITRKIREHSLQKIPYLLVVGDKEMQNGTVAVRGLGG 617

Query: 424 GIREDMSLEEVINYASHRFSNNRPV 448
                ++L++ I   +   S  R V
Sbjct: 618 LDLGVIALDDFIARLAEDISTRRNV 642


>gi|325265785|ref|ZP_08132472.1| threonine--tRNA ligase [Kingella denitrificans ATCC 33394]
 gi|324982768|gb|EGC18393.1| threonine--tRNA ligase [Kingella denitrificans ATCC 33394]
          Length = 637

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 157/441 (35%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R E +  G
Sbjct: 231 YITRIEEAEKRDHRKLGRQLDLF--HLQDEAPGMVFWHPRGWTLWQVIEQHMRRELDAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG + +Y   M  L     +     P +      IF + ++SY
Sbjct: 289 YREVKTPQIMDKTFWEKSGHWANYKDNMF-LTASEKREYAVKPMNCPGHVQIFNNTLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    + ++ +        ++I
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIAEETRKFNL-LVMKI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G + + ++    P     S E    A+ G      +       +P E         
Sbjct: 407 YQQFGFEHVSVKLSLRPEQRAGSDEIWDKAEQGLRDALTACGVEWQELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 458 --------GAFYGPKVEYH---IKDALGRSWQCGTIQLD----FVLPER----LDAEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G++     ++   H G   +W   V    +++       +   D
Sbjct: 499 EDNSKKRPVMLHRAILGSLERFIGILIEEHAGSFPLWLAPVQMVVMNIT------EKQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++  +L   G     D   E+IG +      + +P Q++VG K + + +V ++ R  
Sbjct: 553 YCREVVEKLKAAGFRAEADLRNEKIGYKIRDNSQMRYPYQIVVGDKEMENGQVAVR-RKG 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                M +E+ I       ++
Sbjct: 612 EDLGSMKVEDFIALLQKEIAD 632


>gi|313668802|ref|YP_004049086.1| threonyl-tRNA synthetase [Neisseria lactamica ST-640]
 gi|313006264|emb|CBN87726.1| putative threonyl-tRNA synthetase [Neisseria lactamica 020-06]
          Length = 637

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 164/443 (37%), Gaps = 42/443 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  ++E   RD      +L L    +   + G+  W P G      V   +R+E N 
Sbjct: 229 KAYIRRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQAVEQHMRKELNA 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +     W +SG +++Y   M  +     +     P +      IF + ++
Sbjct: 287 AGYKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F    +    +        +
Sbjct: 346 SYRDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLV 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RI+ + G   + ++    P     S E    A+ G  +   +       +P E       
Sbjct: 405 RIYKQFGFHDVSVKLSLRPEKRAGSDEVWDKAEQGLREALTACGVEWEELPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   + D+L  + +     ++    F    +    ++A +
Sbjct: 458 ----------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LNAEY 496

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +      V +    +G++     ++  +H G   +W   V    +++       +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ ARL   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 551 ADYCREVAARLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEIAD 632


>gi|153803259|ref|ZP_01957845.1| threonyl-tRNA synthetase [Vibrio cholerae MZO-3]
 gi|124121199|gb|EAY39942.1| threonyl-tRNA synthetase [Vibrio cholerae MZO-3]
          Length = 516

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 147/442 (33%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR + N  G 
Sbjct: 108 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSVFRDLEIFIRHKLNEYGY 165

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 166 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHIQIFNQGLKSYR 224

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 225 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEDQIQQEVTSCIKMVYDTY 283

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E     D  E  +  S   MD P   +          
Sbjct: 284 TTFGFQNIVVKLSTRPEKRVGSDEIW---DKSEQALIDSLKAMDIPFEIQ---------- 330

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 331 ----EGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPTRLG--------ATYVGE 375

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 376 SNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVVVNIT------DKQADY 429

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 430 AHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGK 489

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 L++ I +     ++ +
Sbjct: 490 DLGKFKLDDFIAHIQAEIASRK 511


>gi|329118120|ref|ZP_08246832.1| threonine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465780|gb|EGF12053.1| threonine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 640

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 161/442 (36%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W P G      +   +R+E +  G
Sbjct: 237 YIQRIEEAEKRDHRKLGKQLDLF--HLQEEAPGMVFWHPRGWALWQAIEQHMRKELDAAG 294

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W  SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 295 YREVKTPQIMDKTFWERSGHWDNYKDNMF-VTQSEKREYAVKPMNCPGHVQIFNNSLRSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +  + +  +     +RI
Sbjct: 354 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVEEA-RRFNELLVRI 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G      +       +P E         
Sbjct: 413 YKQFGFHDVAVKLSLRPEKRAGSDDIWDKAEQGLRDALTACGVEWEELPGE--------- 463

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D++  + +     ++    F    +    + A +  
Sbjct: 464 --------GAFYGPKIEYH---VKDAIGRSWQCGTLQLD----FVLPER----LDAEYVT 504

Query: 305 A-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +G+   V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 505 ESNGRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVVMNIT------EHQAD 558

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C K+  +L   G  V  D   E+IG +        FP Q++VG K   + +V ++ R  
Sbjct: 559 YCRKVVEKLRAEGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKENGQVAVR-RKA 617

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + +++ I       + +
Sbjct: 618 EDLGSLKVDDFIAQLKREIAES 639


>gi|319637847|ref|ZP_07992613.1| threonyl-tRNA synthetase [Neisseria mucosa C102]
 gi|317401002|gb|EFV81657.1| threonyl-tRNA synthetase [Neisseria mucosa C102]
          Length = 637

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 161/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVDEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S E    A+ G      +       +P E         
Sbjct: 407 YKQFGFHDVAVKLSLRPEQRAGSDEVWDKAEQGLRDALTACGVEWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    ++A +  
Sbjct: 458 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LNAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                +++++ I       ++
Sbjct: 612 EDLGSLNVDDFIAQLQQEITD 632


>gi|134095006|ref|YP_001100081.1| threonyl-tRNA synthetase [Herminiimonas arsenicoxydans]
 gi|166223347|sp|A4G619|SYT_HERAR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|133738909|emb|CAL61956.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Herminiimonas arsenicoxydans]
          Length = 635

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 142/444 (31%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD       L L      + + G+  W P G      V   +R     
Sbjct: 229 EAYLTMLEEAEKRDHRKLGRALDLF--HFQEEAPGLIFWHPKGWTVWQQVEQYMRRVYQD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG +++Y + M    +  +++    P +      IF S ++
Sbjct: 287 NGYQEVKAPQILDRSLWEKSGHWENYKENMFT-TESENRSYALKPMNCPGHVQIFASDLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + +     R+E      G+MR R F   D + F    +              
Sbjct: 346 SYRELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIFCTEDQILDECVAFT-ALLQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G  ++  +  + P     S E                   D    +     D  
Sbjct: 405 KVYRDFGFTNVIYKVATRPEKRVGSDE-----------------AWDKAEAALIASLDRS 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I     A Y    +     L D++    +     ++       G        A +
Sbjct: 448 GCTYEISPGEGAFYGPKIEY---TLKDAIGRMWQCGTIQVDFSMPARLG--------AEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G+      ++  +H G   +W        + +  +   D   
Sbjct: 497 VAEDNTKKIPVMLHRAILGSFERFIGMLIENHAGALPLWLA-----PVQIAVLNISDAQA 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +   L K G  V  D   E+I  +     +   P  +++G K      V ++ R
Sbjct: 552 -DYAQAVAQNLKKQGFRVHVDLRNEKITYKIREHSIQKLPYIIVIGDKERDAGTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M ++ ++   ++     
Sbjct: 611 GNVDLGVMPVDLLVERLNNEVEAK 634


>gi|73540970|ref|YP_295490.1| threonyl-tRNA synthetase [Ralstonia eutropha JMP134]
 gi|123732957|sp|Q472N7|SYT_RALEJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72118383|gb|AAZ60646.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Ralstonia
           eutropha JMP134]
          Length = 635

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 147/444 (33%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD       L L    + + + G+  W P G +    V   +R     
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKSLDLF--HLQEEAPGMVFWHPKGWQVWQAVEQYMRGRLTA 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG + +Y + M  + +   +     P +      IF   ++
Sbjct: 287 AGYDEVRTPQVMDRSLWEKSGHWQNYKENMF-VTESEKRDYAIKPMNCPGHVQIFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F    +    +         
Sbjct: 346 SYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIFCTEEQIVAEA-KAFNELAF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G K + ++    P     S E    A+ G      +       +P E       
Sbjct: 405 SVYDDFGFKDVAVKLSLRPAQRAGSDEVWDHAEEGLRLALRACGVDWEELPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   + D++  + +     +++      G        A +
Sbjct: 458 ----------GAFYGPKVEYH---IKDAIGRSWQCGTLQLDLVLPERLG--------AEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G+      ++  +H G    W        +++       +  
Sbjct: 497 VAEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPAWLAPEQVVVMNIA------ESQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E +   L K G     D   E+I  +     L   P  ++VG K    ++V ++ R
Sbjct: 551 AEYAENVVQSLLKQGFRAKADLRNEKITYKIREHSLQKIPYLLVVGDKERDANQVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M +   +       +N 
Sbjct: 611 GNVDLGVMPVSAFVERLQQDVTNK 634


>gi|291533300|emb|CBL06413.1| threonyl-tRNA synthetase [Megamonas hypermegale ART12/1]
          Length = 423

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/442 (19%), Positives = 157/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    RE   + G
Sbjct: 19  YLKMLEEAAKRDHRKLGKELDLFS--LHEEGPGFPFFHPNGMVIRNELINYWREVHRQFG 76

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +D Y + M      + +     P +      ++ +   SY
Sbjct: 77  YQEIKTPMIMNRKLWETSGHWDHYKENM-YFTKIDGEDYAIKPMNCPGGMLVYLTQQHSY 135

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+ F L P   +    ++   + ++
Sbjct: 136 RDLPLRLGELGLVHRHELSGALHGLMRVRNFTQDDAHIFML-PNQIEDEIQRVIDLFDKV 194

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL        + P     S E                   +    +     +    
Sbjct: 195 YSTFGLTY-HAELSTRPEDSMGSDE-----------------VWETATNALRNALEHRGL 236

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H   L DS+    +     +++     F          T+ G
Sbjct: 237 KYVINEGDGAFYGPKIDFH---LTDSIGRTWQCGTIQLDMLMPEKFD--------LTYIG 285

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++    +     +P  +AP ++ ++ I        D
Sbjct: 286 EDGQKHRPVMIHRVVYGSIERFIGILI---ENYAGAFPAWLAPVQVKILPISDK---YVD 339

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I  ++  +G  V  DD  E+IG +   A +   P  +IVG   + +  + ++ R  
Sbjct: 340 YAYEIKRKMFDLGIRVEVDDRNEKIGYKIREAQVKKVPYSIIVGESELENKNISVRKRRE 399

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M  +  IN         
Sbjct: 400 KDTVTMDTDTFINNLLEEIKTK 421


>gi|293604689|ref|ZP_06687089.1| threonine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
 gi|292816858|gb|EFF75939.1| threonine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
          Length = 650

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 143/447 (31%), Gaps = 41/447 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E  R D      +L L        + G+  W P G      V   +R   N 
Sbjct: 234 EAYLHMLEEAERRDHRKIGRELDLF--HFQDEAPGLIFWHPKGWALWQQVEQYMRAIYNN 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +D+Y + M    +  ++     P +      IF + + 
Sbjct: 292 NGYQEVKAPQILDISLWKKTGHWDNYRENMFT-TESENRVYGLKPMNCPGHVQIFNAGLH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + +     R+E      G+MR R F   D + F    +              
Sbjct: 351 SYRELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIFCTEEQLQDEC-ADFTALLQ 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   +  +  + P     S E                   D    +        
Sbjct: 410 KVYRDFGFTEVLYKVATRPEKRIGSDE-----------------VWDTAEQALMESLRRT 452

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I     A Y    +     L D++  + +     ++       G        A +
Sbjct: 453 GCEFEISPGEGAFYGPKVEY---TLKDAIGRHWQCGTIQVDFSMPVRLG--------AEY 501

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +      +    +G++     ++  +H G    W   V      +       +  
Sbjct: 502 VDQNDQRRPPVMLHRAILGSLERFIGMLIENHAGAMPPWLAPVQAVVCCI------SEPS 555

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   +I   L K G  V  D  GE+I  +     L   P  ++VG K   +  V ++  
Sbjct: 556 ADYAAEITQSLKKQGFRVESDLRGEKITRKIREHSLQKVPYILVVGDKEKQNGTVAVRGL 615

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPV 448
                  ++ +E +   S   S  R V
Sbjct: 616 GGLDLGAIAYDEFVARLSEDVSARRDV 642


>gi|269214426|ref|ZP_05986526.2| threonine--tRNA ligase [Neisseria lactamica ATCC 23970]
 gi|269209844|gb|EEZ76299.1| threonine--tRNA ligase [Neisseria lactamica ATCC 23970]
          Length = 643

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 164/443 (37%), Gaps = 42/443 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  ++E   RD      +L L    +   + G+  W P G      V   +R+E N 
Sbjct: 235 KAYIRRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQAVEQHMRKELNA 292

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +     W +SG +++Y   M  +     +     P +      IF + ++
Sbjct: 293 AGYKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLR 351

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F    +    +        +
Sbjct: 352 SYRDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLV 410

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RI+ + G   + ++    P     S E    A+ G  +   +       +P E       
Sbjct: 411 RIYKQFGFHDVSVKLSLRPGKRAGSDEVWDKAEQGLREALTACGVEWEELPGE------- 463

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   + D+L  + +     ++    F    +    ++A +
Sbjct: 464 ----------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LNAEY 502

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +      V +    +G++     ++  +H G   +W   V    +++       +  
Sbjct: 503 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQ 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ ARL   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 557 ADYCREVAARLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 615

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 616 KAEDLGSLDLDDFIAQLQQEIAD 638


>gi|288940715|ref|YP_003442955.1| threonyl-tRNA synthetase [Allochromatium vinosum DSM 180]
 gi|288896087|gb|ADC61923.1| threonyl-tRNA synthetase [Allochromatium vinosum DSM 180]
          Length = 639

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 141/444 (31%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
             +L  L+E   RD      +L L        + G+  W   G+         +RE+ + 
Sbjct: 232 NAYLHRLEEAEKRDHRKLGKQLDLF--HFQDEAPGMAFWHAKGRVVYRLAETYMREKLDE 289

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG +D +   M      +D+     P +      ++   +K
Sbjct: 290 YGYQEVETPQVLDRSLWERSGHWDKFAGGMFT-THLDDRDFAIKPMNCPGHIQLYNQGLK 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R+E      G+MR+R F   DA+ F    +        +     
Sbjct: 349 SYRDLPLRLAEFGVVHRNEPSGTLHGLMRARRFTQDDAHVFCTEDQLQSE-VATLIDMVF 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +   G  +I +     P     + E                   D    +     DD 
Sbjct: 408 ETYRDFGFDAIDLALSLRPEQRVGADE-----------------LWDKAEAALAQSLDDK 450

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I     A Y    +     L DS+    +     ++       G        A +
Sbjct: 451 GLTYRIQPGEGAFYGPKIEF---TLHDSIGRAWQCGTIQVDFSMPGRLG--------AHY 499

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G++     ++   + G   +W   V    +++          
Sbjct: 500 IAEDNSKQTPVMIHRAVLGSVERFIGILIEHYAGLLPVWLAPVQAVALNIT------DRQ 553

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++   L   G    +D   E+IG +     L   P  ++VG + V    + ++ R
Sbjct: 554 ADYVKEVVKTLRDKGFRAEFDLRNEKIGFKIREHTLQRVPYLLVVGDREVETRSLSVRDR 613

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                   SL+  I   S   +N 
Sbjct: 614 QGQDLGSFSLDAFIERLSQDVANR 637


>gi|309378779|emb|CBX22605.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 637

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 164/443 (37%), Gaps = 42/443 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  ++E   RD      +L L    +   + G+  W P G      V   +R+E N 
Sbjct: 229 KAYIRRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQAVEQHMRKELNA 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +     W +SG +++Y   M  +     +     P +      IF + ++
Sbjct: 287 AGYKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F    +    +        +
Sbjct: 346 SYRDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARVFN-ELLV 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RI+ + G   + ++    P     S E    A+ G  +   +       +P E       
Sbjct: 405 RIYKQFGFHDVSVKLSLRPGKRAGSDEVWDKAEQGLREALTACGVEWEELPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   + D+L  + +     ++    F    +    ++A +
Sbjct: 458 ----------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LNAEY 496

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +      V +    +G++     ++  +H G   +W   V    +++       +  
Sbjct: 497 VTENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++ ARL   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R
Sbjct: 551 ADYCREVAARLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-R 609

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  + L++ I       ++
Sbjct: 610 KAEDLGSLDLDDFIAQLQQEIAD 632


>gi|121605747|ref|YP_983076.1| threonyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
 gi|166225475|sp|A1VR77|SYT_POLNA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120594716|gb|ABM38155.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Polaromonas
           naphthalenivorans CJ2]
          Length = 635

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 136/444 (30%), Gaps = 42/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + + + RD      +L L    I  HS G+  W P G      V   +R+     
Sbjct: 230 QYLTMLEEADKRDHRKLGKELDLF--HIDDHSPGLVFWHPKGWTVWQGVEQYMRKVYQNN 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P L    LW ++G +D Y   M    +   +     P +      IF+  IKS
Sbjct: 288 GYQEVKGPQLLDKTLWEKTGHWDKYRDNMFT-TESEKRDFALKPMNCPGHILIFKQGIKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + +     R+E      G+MR R F   D + F    +  K   +       +
Sbjct: 347 YRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIFCTEEQILKECVDYTT-LLQK 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G K+I  +  + P     S E                   D    +         
Sbjct: 406 VYTDFGFKNIIYKVATRPEARIGSDE-----------------SWDKAEHALIESLRASG 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I     A Y    +     L D++    +     ++              + A + 
Sbjct: 449 CEFEISPGEGAFYGPKIEY---TLKDAIGRQWQCGTIQVDFSMP--------ERLDAEYV 497

Query: 304 GADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G DG  H   M    I     R +  +IE                               
Sbjct: 498 GEDGARHRPVMLHRAIVGSLERFIGILIEEHAGALPTWLAPEQVSVLTIT-------DSQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +    +   L   G  V  D   E+I  +     L   P  ++VG K ++   V ++ R
Sbjct: 551 AEYARGVAKTLQNQGLRVNLDLRNEKITYKIREHSLQKLPFILVVGDKEMAAGAVSVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MSLE      +   +  
Sbjct: 611 GNKDLGVMSLEAFAERIASDIAQK 634


>gi|120554978|ref|YP_959329.1| threonyl-tRNA synthetase [Marinobacter aquaeolei VT8]
 gi|166223352|sp|A1U2C3|SYT_MARAV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120324827|gb|ABM19142.1| Ser-tRNA(Thr) hydrolase [Marinobacter aquaeolei VT8]
          Length = 641

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 156/441 (35%), Gaps = 39/441 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      KL L    + + + G+  W P G      V   +R +Q++
Sbjct: 229 KAYLHRLEEAEKRDHRKIGKKLGLF--HMQEEAPGMVFWHPDGWSLYQEVEQYMRAQQHK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + S  LW +SG +D +  +M    +         P +      +F   +K
Sbjct: 287 HGYKEIKTPQVVSRTLWEKSGHWDKFKDDMFT-TESEKHDYAIKPMNCPCHVQVFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    +     R+E      G+MR R F   DA+ F       +   +       
Sbjct: 346 SYKDLPLRLAEFGSCHRNEASGALHGLMRVRGFTQDDAHIFCEEDAIQEE-VSAFIAMLH 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G   I  +  + P     S E    ++    Q    +      +P E       
Sbjct: 405 EIYADFGFSEILYKLSTRPEKRVGSDEVWDKSEAALEQALNREGVDWELLPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    +     L D L    +     ++       G +Y        
Sbjct: 458 ----------GAFYGPKIEF---SLKDCLGRVWQCGTIQVDFSMPGRLGAQY-------V 497

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +   V +    +G+      ++   ++G    W   +AP +++++NI       R
Sbjct: 498 ADNSERKTPVMLHRAVLGSFERFIGILIEEYEGAFPTW---LAPTQVAVLNITDK---QR 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D C+ +  +L   G  V  D   E+IG +     L   P  V+VG K + ++ V ++ R 
Sbjct: 552 DYCQNLAKKLDSSGYRVNADLRNEKIGFKIREHTLNKVPYLVVVGDKEIENNAVAVRTRK 611

Query: 423 TGIREDMSLEEVINYASHRFS 443
                 MS+++     +    
Sbjct: 612 GEDLGTMSVDDFEKLLAADVE 632


>gi|192360042|ref|YP_001982990.1| threonyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
 gi|238692463|sp|B3PL16|SYT_CELJU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190686207|gb|ACE83885.1| threonyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
          Length = 642

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 150/446 (33%), Gaps = 39/446 (8%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L +L+E   RD    + K  L    +   + G+  W P G      +   +R +
Sbjct: 227 KQLKAYLNLLEEAAKRDHRKLAKKFDLF--HLQDEAPGMVFWHPKGWTLWQQIEQYMRAK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QN  G  E+  P +    LW +SG +++Y + M    +   +     P +      IF  
Sbjct: 285 QNDWGYQEVRTPLIMDRVLWEKSGHWENYRENMFT-TESEKRDFAVKPMNCPGHVQIFNH 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++S+++LP    +     R+E      G+MR R F+  DA+ F    +           
Sbjct: 344 GLRSHKDLPLRLAEFGSCHRNEASGALHGIMRVRGFVQDDAHIFCTEDQVVAE-VAAFNQ 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G   I ++    P     S E                   +       T  
Sbjct: 403 MLKSVYDDFGFTDIAVKLSLRPEKYAGSLE-----------------TWNKAEEGLRTAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                    +    A Y    +    ++ D+L  + +     ++         +Y     
Sbjct: 446 RAAGLEWEELPGEGAFYGPKIEY---QIKDALGRSWQCGTIQLDYVLPERLDAEY----- 497

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                 + +   V +    +G+      ++   ++G   +W   V     ++        
Sbjct: 498 --VADDNVRKRPVMLHRAILGSFERFLGILIEHYEGSFPVWLSPVQVVVANIT------D 549

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  +++   L + G  V  D   E+IG +     +   P  ++VG K V +  + ++
Sbjct: 550 SQAEYVKRVEKALREQGIRVIADLRNEKIGFKIREHTIQRVPYLLVVGDKEVENQSLAVR 609

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       M L+  I + +   +  
Sbjct: 610 TRDGKDLGVMPLDAFIAHLTADIARR 635


>gi|304436955|ref|ZP_07396918.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369906|gb|EFM23568.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 639

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 158/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    RE   R G
Sbjct: 233 YLHMLEEAAKRDHRKLGRELDLFS--LHEEGPGFPFFHPNGMALRNALLDYWREVHRRYG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + S  LW  SG +  Y + M    + +++     P +      ++RS + SY
Sbjct: 291 YQEISTPVILSRKLWETSGHWFHYRENMYT-TEIDEEDYAIKPMNCPGCMLVYRSQLHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+ R R F   DA+   +TP+  +         +  +
Sbjct: 350 RDLPLRLAELGLVHRHELSGALHGLFRVRNFTQDDAH-LFVTPDQIEGEIQHTIDLFDEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL        + P     + E                   +          D+   
Sbjct: 409 YRTFGLTY-KAELSTRPEDSMGTDE-----------------MWEMATNGLQKALDNRGL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+    +     +++     F          T+ G
Sbjct: 451 DYVVNEGDGAFYGPKIDFH---LRDSIGRTWQCGTIQLDMSLPEKFD--------LTYVG 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++    +     +P  +AP ++ ++ I    +    
Sbjct: 500 EDGEKHRPVMLHRVVYGSIERFIGILI---ENYAGAFPVWMAPVQVRILPIT---ERHAA 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++Y ++  +G  V  D   E+ G +   + +   P  ++VG + +    V  +    
Sbjct: 554 YAEELYKKMFDLGLRVEVDARNEKTGYKIRESQVKKTPYTLVVGDQEMESGTVAFRKYGE 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + + I     + +  
Sbjct: 614 KDSTVLPVADFIALVQEKIATR 635


>gi|226941673|ref|YP_002796747.1| threonyl-tRNA synthetase [Laribacter hongkongensis HLHK9]
 gi|254783525|sp|C1DDA6|SYT_LARHH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226716600|gb|ACO75738.1| Syt [Laribacter hongkongensis HLHK9]
          Length = 633

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 144/440 (32%), Gaps = 39/440 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    I   + G+  W P G      V   +R     
Sbjct: 229 EAYLHMLEEAEKRDHRKLGRQLDLF--HIQDEAPGMVFWHPKGWTLWQQVEQYMRRVLIA 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW +SG +  Y ++++   +   +     P +      IF   +K
Sbjct: 287 NDYQEVRTPQIVDRSLWEKSGHWAMY-QDLMFTTESEKRDYAVKPMNCPCHIQIFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T    +           
Sbjct: 346 SYRDLPLRMAEFGSCHRNEPSGSLHGIMRVRNFVQDDAHIFC-TEAQMQPETAAFIDLLQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G  +I ++  + P     + E                   D    +        
Sbjct: 405 AVYQDFGFDNILIKLSTRPEKRVGADE-----------------LWDQAEAALAAALAAK 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    +     L D L    +     ++       G +Y    +A  
Sbjct: 448 GLAYELQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLDFNLPVRLGAEYVSEDNAK- 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                  H V +    +G++     ++   H G   +W   V    +++       +   
Sbjct: 504 ------KHPVMLHRAILGSLERFIGILIEHHAGAMPLWLAPVQMAVLNIT------EAQA 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   ++   L K G  V  D   E+I  +     L   P Q+IVG K  + + V ++ R 
Sbjct: 552 EYATEVAETLKKQGFRVDLDLRNEKISYKIREHSLQKLPYQIIVGDKEKAGALVAVRART 611

Query: 423 TGIREDMSLEEVINYASHRF 442
                 + L + I       
Sbjct: 612 GEDLGQIPLSQFIERLKSEL 631


>gi|226324523|ref|ZP_03800041.1| hypothetical protein COPCOM_02307 [Coprococcus comes ATCC 27758]
 gi|225206971|gb|EEG89325.1| hypothetical protein COPCOM_02307 [Coprococcus comes ATCC 27758]
          Length = 643

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/443 (20%), Positives = 158/443 (35%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L   M+ +   G   +LP G +  + +    RE   + 
Sbjct: 229 EYLHMMEEAKKRDHRKLGKELGLF--MMREEGPGFPFFLPKGMELKNQLLDYWREIHKKA 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E+S P + S  LW  SG +D Y   M      +D+     P +      ++ S  +S
Sbjct: 287 GYVEISTPIMLSRHLWETSGHWDHYKDNMYT-TVIDDEDFAIKPMNCPGGILVYESEPRS 345

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ L  R E   +  G+MR R F   DA+ F    +        +      
Sbjct: 346 YRDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMTPEQVRDE-IKGVVKLINE 404

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G K   +   + P     S E                   D    +     DD+ 
Sbjct: 405 VYSLFGFKYH-VELSTRPEDSMGSDE-----------------DWDMATEALRGALDDLG 446

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H E   DS+    +     ++    F    ++    +  + 
Sbjct: 447 LPYVVNEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQLPLRF----NLEYT 495

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG+ H    +     G++     ++     G    W   +AP ++ ++ I        
Sbjct: 496 GADGEKHRPIMIHRVIFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPISDK---YM 549

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +K+   L+  G     D   E+IG +   A +   P  ++VG+K   D  V I+ R 
Sbjct: 550 DYAQKVLDELNNSGVRAEIDTRAEKIGYKIREAQMKKIPYMLVVGAKEEEDGLVSIRSRF 609

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G     SL + +          
Sbjct: 610 EGDEGQKSLTDFLAAIKMEIQAK 632


>gi|118444060|ref|YP_877833.1| threonyl-tRNA synthetase [Clostridium novyi NT]
 gi|166223336|sp|A0PZN1|SYT_CLONN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118134516|gb|ABK61560.1| threonyl-tRNA synthetase [Clostridium novyi NT]
          Length = 637

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 156/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + +   G   + P G    + +    RE   + G
Sbjct: 231 YLHMLEEAKKRDHRKLGKELGLFD--LKEEGPGFPFFYPKGMILRNTLENYWREMHEKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG +D Y + M      + +     P +      +++S + SY
Sbjct: 289 YGEIRTPIILNEKLWHQSGHWDHYKENM-YFTKIDGEDYAIKPMNCPGSILVYKSDLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ L  R E      G+MR R F   DA+ F    + +      +       
Sbjct: 348 RELPIRLGELGLVHRHEYSGALHGLMRVRNFTQDDAHIFMTKEQITSE-ILGVIKMIDNF 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E                   +          ++   
Sbjct: 407 YSLFGFEYF-VELSTRPEDSMGSDE-----------------DWEAATNGLIKALNEAGL 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H           +    R  + G I     +       ++ G
Sbjct: 449 EYKINEGDGAFYGPKIDFHL----------RDCLGRTWQCGTI-QLDFQMPERFDLSYVG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H          G++     ++   + G    W   +AP ++ ++NI  +     +
Sbjct: 498 ADGEKHRPVMAHRVIFGSIERFIGILTEHYAGAFPTW---LAPVQVKIMNITDN---QVE 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C++I   L++ G  V  D   E+IG +   A L   P  +++G K +++  + ++ R  
Sbjct: 552 YCKEIQKVLNENGIRVELDLRNEKIGYKIREAQLQKIPYMLVLGDKEMNEKTIAVRARKQ 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M+L + +          
Sbjct: 612 GDLGAMNLTDFVAMVKKEIEEK 633


>gi|167749880|ref|ZP_02422007.1| hypothetical protein EUBSIR_00848 [Eubacterium siraeum DSM 15702]
 gi|167657192|gb|EDS01322.1| hypothetical protein EUBSIR_00848 [Eubacterium siraeum DSM 15702]
          Length = 639

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/449 (21%), Positives = 162/449 (36%), Gaps = 44/449 (9%)

Query: 2   RRSKY--FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           + S+   +L +++E   RD      +L L T M      G   +LP G    + +    R
Sbjct: 225 KASELEAYLNMIEEAKKRDHRKLGKELELFTIM--DEGPGFPFFLPKGMTLKNTLIDYWR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +   R G +E+S P + +  LW  SG +D Y + M      +D      P +      ++
Sbjct: 283 QIHTRDGYVEISTPIMLNRQLWETSGHWDHYKENMYT-TVIDDTEFAIKPMNCPGGILVY 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +S  +SYR+LP    ++ L  R E      G+MR R F   DA+ F    + +     K 
Sbjct: 342 KSKPRSYRDLPIRMGELGLVHRHEKSGALHGLMRVRCFTQDDAHIFMTPDQITDE--IKG 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            V  +   ++L      +   + P     S E                   D        
Sbjct: 400 VVRLIDEVYKLFGFKYHVELSTQPEDSMGSQE-----------------DWDMATEGLRK 442

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D +     + E   A Y    D H E   DSL    +     ++    F    ++   
Sbjct: 443 ALDSLGLPYVVNEGDGAFYGPKIDFHLE---DSLGRTWQCGTIQLD----FQLPMRF--- 492

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + GADG+ H    +     G++     ++     G   IW   +AP ++ L+ I  
Sbjct: 493 -ELEYTGADGEKHRPIMIHRVVFGSIERFIGILTEHFAGAFPIW---LAPVQVELMPIAD 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +   K+ A L K G  V  D   E+IG +   A L   P  +++G K V    V
Sbjct: 549 RH---NEFTSKVAAELKKRGIRVEVDGRSEKIGFKIREAQLQKIPYMLVIGDKEVETENV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I+ R  G    MS+ +  +         
Sbjct: 606 SIRCRKRGDIGTMSVSDFCDMVEKEIREK 634


>gi|291531005|emb|CBK96590.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Eubacterium
           siraeum 70/3]
          Length = 639

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/449 (21%), Positives = 161/449 (35%), Gaps = 44/449 (9%)

Query: 2   RRSKY--FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           + S+   +L +++E   RD      +L L T M      G   +LP G    + +    R
Sbjct: 225 KASELEAYLNMIEEAKKRDHRKLGKELELFTIM--DEGPGFPFFLPKGMTLKNTLIDYWR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +   R G +E+S P + +  LW  SG +D Y + M      +       P +      ++
Sbjct: 283 QIHTRDGYVEISTPIMLNRQLWETSGHWDHYKENMYT-TVIDGTEFAIKPMNCPGGILVY 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +S  +SYR+LP    ++ L  R E      G+MR R F   DA+ F    + +     K 
Sbjct: 342 KSKPRSYRDLPIRMGELGLVHRHEKSGALHGLMRVRCFTQDDAHIFMTPDQITDE--IKG 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            V  +   ++L      +   + P     S E                   D        
Sbjct: 400 VVRLIDEVYKLFGFKYHVELSTQPEDSMGSQE-----------------DWDMATEGLRK 442

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D +     + E   A Y    D H E   DSL    +     ++    F    ++   
Sbjct: 443 ALDSLGLPYVVNEGDGAFYGPKIDFHLE---DSLGRTWQCGTIQLD----FQLPMRF--- 492

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + GADG+ H    +     G++     ++     G   IW   +AP ++ L+ I  
Sbjct: 493 -ELEYTGADGEKHRPIMIHRVVFGSIERFIGILTEHFAGAFPIW---LAPVQVELMPIAD 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +   K+ A L K G  V  D   E+IG +   A L   P  +++G K V    V
Sbjct: 549 RH---NEFTSKVAAELKKRGIRVEVDGRSEKIGFKIREAQLQKIPYMLVIGDKEVETENV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I+ R  G    MS+ +  +         
Sbjct: 606 SIRCRKRGDIGTMSVSDFCDMVEKEIREK 634


>gi|269213639|ref|ZP_05982445.2| threonine--tRNA ligase [Neisseria cinerea ATCC 14685]
 gi|269145722|gb|EEZ72140.1| threonine--tRNA ligase [Neisseria cinerea ATCC 14685]
          Length = 643

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 160/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 237 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 294

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 295 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 354 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVDEARAFN-ELLVRI 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S E    A+ G      +       +P E         
Sbjct: 413 YKQFGFHDVAVKLSLRPEQRAGSDEVWDKAEQGLRDALTACGVEWEELPGE--------- 463

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    ++A +  
Sbjct: 464 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LNAEYVT 504

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                   V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 505 EKNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 558

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 559 YCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 617

Query: 424 GIREDMSLEEVINYASHRFSN 444
                +++++ I       ++
Sbjct: 618 EDLGSLNVDDFIAQLQQEITD 638


>gi|224826514|ref|ZP_03699615.1| threonyl-tRNA synthetase [Lutiella nitroferrum 2002]
 gi|224601115|gb|EEG07297.1| threonyl-tRNA synthetase [Lutiella nitroferrum 2002]
          Length = 632

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 155/442 (35%), Gaps = 41/442 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L    +   + G+  W P G +   +V   +R    
Sbjct: 228 LAQYLYMLEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWQLWQSVEQYMRATLA 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P +    LW +SG +++Y + M    +   +     P +      +F   +
Sbjct: 286 EAGYQEIRTPMVMDRILWEKSGHWENYRENMFT-TESEKRDYAVKPMNCPGHVQVFNQGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  + +     R+E      G+MR R F+  DA+ F    +    +        
Sbjct: 345 RSYRDLPLRYAEFGACHRNEPSGALHGIMRVRGFVQDDAHIFCTEEQIIDEA-KAFNELT 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +R++ + G  ++ ++    P     + E    A+ G  +   +       +P E      
Sbjct: 404 MRVYRQFGFDNVSVKLSLRPEKYSGTLEAWDRAENGLREALRACGIEWEELPGE------ 457

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y    + H   + D+L  + +     ++       G        A 
Sbjct: 458 -----------GAFYGPKIEYH---IKDALGRSWQCGTLQLDYVLPERLG--------AE 495

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     ++  +H G   +W   V    +++       + 
Sbjct: 496 YVAEDNSRKRPVMLHRAILGSLERFLGILIENHAGAFPLWLAPVQMVVMNIT------EA 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D    +   L K G  V  D   E+I  +     L   P Q+IVG K  +D  + ++ 
Sbjct: 550 QADYAASVVQTLKKQGFRVELDLRNEKISYKIREHSLQKLPYQIIVGDKEKADGLIAVRA 609

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R       ++L++ +       
Sbjct: 610 RGE-DLGQLTLDDFVARLKAEM 630


>gi|167629857|ref|YP_001680356.1| threonyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
 gi|167592597|gb|ABZ84345.1| threonyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
          Length = 641

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 153/442 (34%), Gaps = 42/442 (9%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  ++E  R D      +L L T  I +   G   + P G    + +    REE  R G 
Sbjct: 235 LRRIEEAKRRDHRRIGQELELYT--ILEEGPGFPFFFPKGMIIRNELENFWREEHARAGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW  SG + +Y + M  +   +++     P +      +++  I SYR
Sbjct: 293 REVRTPIILNRSLWERSGHWANYRENM-YVTQIDEEDYCVKPMNCPGGMLVYKQAIHSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ L  R E+     G+MR R F   DA+ F +TP   K     +     R++
Sbjct: 352 DLPLRMGELGLVHRHEISGALHGLMRVRCFTQDDAHIF-MTPGQIKDEIIGVIELIDRMY 410

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G                      V   T   +   S +  +    S           
Sbjct: 411 KTFGFAY------------------HVELSTKPEKAMGSDEIWELATNSLEEALKAKGMD 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I     A Y    D H           K    R  + G I     +       T+ G 
Sbjct: 453 YKINPGDGAFYGPKIDFHL----------KDCIGRTWQCGTI-QLDFQMPERFDLTYVGE 501

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H    +     G++     ++   + G    W   +AP +  ++ I        + 
Sbjct: 502 DGQKHRPVMIHRVVFGSIERFIGILTEHYAGAFPTW---LAPVQARVLPITDRHH---EY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              + + L+K G  V  D   E+IG +     +   P  ++VG K   +  V ++ R  G
Sbjct: 556 AASVRSALAKQGVRVEVDGRNEKIGYKIREGQVQKIPYLLVVGDKEAENGAVAVRKRGEG 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
            +  M+L+          +  R
Sbjct: 616 DKGAMALDAFAAMILEEIAQKR 637


>gi|294670480|ref|ZP_06735360.1| hypothetical protein NEIELOOT_02198 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307759|gb|EFE49002.1| hypothetical protein NEIELOOT_02198 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 637

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 160/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S++    A+ G  +   +       +P E         
Sbjct: 407 YKQFGFHDVSVKLSLRPEKRAGSNDVWDKAEQGLREALTACGVEWDELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 458 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W        +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPAQMVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEIAD 632


>gi|255654593|ref|ZP_05400002.1| threonyl-tRNA synthetase [Clostridium difficile QCD-23m63]
          Length = 639

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 156/435 (35%), Gaps = 41/435 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L   MI +   G   +LP G +  + +    RE   + G IE+  P
Sbjct: 238 AKKRDHRKLGKELGLF--MIPEEGPGFPMFLPKGMELKNELLKFWREIHRKAGYIEIESP 295

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW  SG +  Y + M  +   +D+     P +       + S + SYR+ P   
Sbjct: 296 IILNRKLWETSGHWYHYKENMYTVK-IDDEDYAIKPMNCPGGLIYYNSQLHSYRDFPMRV 354

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R EL     G+MR R F   D++ F L  +       K   + +   ++    
Sbjct: 355 AELGRVHRHELSGALQGLMRVRAFTQDDSHIFMLPEQIKDE--IKGVANLIDGIYKTFGF 412

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     S+E                   +          +++    +I E 
Sbjct: 413 EYNLELSTRPENSMGSNE-----------------EWEAAENGLREALEELGLPYTINEG 455

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    D H   L D L    +     +++     F          T+ G DG+ H 
Sbjct: 456 DGAFYGPKIDFH---LKDCLGRTWQCGTIQLDMQLPRQFDN--------TYIGQDGEKHR 504

Query: 312 V-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              +     G++     ++    +     +P  ++P ++ ++ I        D   ++  
Sbjct: 505 PVMIHRVAFGSIERFIGILI---EHYAGKFPVWLSPTQVKILPISDK---FMDYANEVKK 558

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G  V  DD  E+IG +   A L   P  +IVG K V+D+ V ++ R  G    + 
Sbjct: 559 ELFDKGIRVELDDRAEKIGFKIREAQLEKVPYMLIVGEKEVADNNVSVRSRDKGEIGSIK 618

Query: 431 LEEVINYASHRFSNN 445
           L+E I   S    + 
Sbjct: 619 LDEFIASISKEIESR 633


>gi|255305562|ref|ZP_05349734.1| threonyl-tRNA synthetase [Clostridium difficile ATCC 43255]
          Length = 639

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 155/435 (35%), Gaps = 41/435 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L   MI +   G   +LP G +  + +    RE   + G IE+  P
Sbjct: 238 AKKRDHRKLGKELGLF--MIPEEGPGFPMFLPKGMELKNELLKFWREIHRKAGYIEIESP 295

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW  SG +  Y + M  +   +D+     P +       + S + SYR+ P   
Sbjct: 296 IILNRKLWETSGHWYHYKENMYTVK-IDDEDYAIKPMNCPGGLIYYNSQLHSYRDFPMRV 354

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R EL     G+MR R F   D++ F L  +       K   + +   ++    
Sbjct: 355 AELGRVHRHELSGALQGLMRVRAFTQDDSHIFMLPEQIKDE--IKGVANLIDGIYKTFGF 412

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     S E                   +          +++    +I E 
Sbjct: 413 EYNLELSTRPENSMGSDE-----------------EWEAAENGLREALEELGLPYTINEG 455

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    D H   L D L    +     +++     F          T+ G DG+ H 
Sbjct: 456 DGAFYGPKIDFH---LKDCLGRTWQCGTIQLDMQLPRQFDN--------TYIGQDGEKHR 504

Query: 312 V-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              +     G++     ++    +     +P  ++P ++ ++ I        D   ++  
Sbjct: 505 PVMIHRVAFGSIERFIGILI---EHYAGKFPVWLSPTQVKILPISDK---FMDYANEVKK 558

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G  V  DD  E+IG +   A L   P  +IVG K V+D+ V ++ R  G    + 
Sbjct: 559 ELFDKGIRVELDDRAEKIGFKIREAQLEKVPYMLIVGEKEVADNNVSVRSRDKGEIGSIK 618

Query: 431 LEEVINYASHRFSNN 445
           L+E I   S    + 
Sbjct: 619 LDEFIASISKEIESR 633


>gi|126698152|ref|YP_001087049.1| threonyl-tRNA synthetase [Clostridium difficile 630]
 gi|254974173|ref|ZP_05270645.1| threonyl-tRNA synthetase [Clostridium difficile QCD-66c26]
 gi|255091574|ref|ZP_05321052.1| threonyl-tRNA synthetase [Clostridium difficile CIP 107932]
 gi|255099679|ref|ZP_05328656.1| threonyl-tRNA synthetase [Clostridium difficile QCD-63q42]
 gi|255313300|ref|ZP_05354883.1| threonyl-tRNA synthetase [Clostridium difficile QCD-76w55]
 gi|255515991|ref|ZP_05383667.1| threonyl-tRNA synthetase [Clostridium difficile QCD-97b34]
 gi|255649082|ref|ZP_05395984.1| threonyl-tRNA synthetase [Clostridium difficile QCD-37x79]
 gi|306519197|ref|ZP_07405544.1| threonyl-tRNA synthetase [Clostridium difficile QCD-32g58]
 gi|123066930|sp|Q189B8|SYT_CLOD6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115249589|emb|CAJ67406.1| Threonyl-tRNA synthetase [Clostridium difficile]
          Length = 639

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 155/435 (35%), Gaps = 41/435 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L   MI +   G   +LP G +  + +    RE   + G IE+  P
Sbjct: 238 AKKRDHRKLGKELGLF--MIPEEGPGFPMFLPKGMELKNELLKFWREIHRKAGYIEIESP 295

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW  SG +  Y + M  +   +D+     P +       + S + SYR+ P   
Sbjct: 296 IILNRKLWETSGHWYHYKENMYTVK-IDDEDYAIKPMNCPGGLIYYNSQLHSYRDFPMRV 354

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R EL     G+MR R F   D++ F L  +       K   + +   ++    
Sbjct: 355 AELGRVHRHELSGALQGLMRVRAFTQDDSHIFMLPEQIKDE--IKGVANLIDGIYKTFGF 412

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     S E                   +          +++    +I E 
Sbjct: 413 EYNLELSTRPENSMGSDE-----------------EWEAAENGLREALEELGLPYTINEG 455

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    D H   L D L    +     +++     F          T+ G DG+ H 
Sbjct: 456 DGAFYGPKIDFH---LKDCLGRTWQCGTIQLDMQLPRQFDN--------TYIGQDGEKHR 504

Query: 312 V-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              +     G++     ++    +     +P  ++P ++ ++ I        D   ++  
Sbjct: 505 PVMIHRVAFGSIERFIGILI---EHYAGKFPVWLSPTQVKILPISDK---FMDYANEVKK 558

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G  V  DD  E+IG +   A L   P  +IVG K V+D+ V ++ R  G    + 
Sbjct: 559 ELFDKGIRVELDDRAEKIGFKIREAQLEKVPYMLIVGEKEVADNNVSVRSRDKGEIGSIK 618

Query: 431 LEEVINYASHRFSNN 445
           L+E I   S    + 
Sbjct: 619 LDEFIASISKEIESR 633


>gi|291557532|emb|CBL34649.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Eubacterium
           siraeum V10Sc8a]
          Length = 639

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/449 (21%), Positives = 162/449 (36%), Gaps = 44/449 (9%)

Query: 2   RRSKY--FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           + S+   +L +++E   RD      +L L T M      G   +LP G    + +    R
Sbjct: 225 KASELEAYLNMIEEAKKRDHRKLGKELELFTIM--DEGPGFPFFLPKGMTLKNTLIDYWR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +   R G +E+S P + +  LW  SG +D Y + M      +D      P +      ++
Sbjct: 283 QIHTRDGYVEISTPIMLNRQLWETSGHWDHYKENMYT-TVIDDTEFAIKPMNCPGGILVY 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +S  +SYR+LP    ++ L  R E      G+MR R F   DA+ F    + +     K 
Sbjct: 342 KSKPRSYRDLPIRMGELGLVHRHEKSGALHGLMRVRCFTQDDAHIFMTPDQITDE--IKG 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            V  +   ++L      +   + P     S E                   D        
Sbjct: 400 VVRLIDEVYKLFGFKYHVELSTQPEDSMGSQE-----------------DWDMATEGLRK 442

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D +     + E   A Y    D H E   DSL    +     ++    F    ++   
Sbjct: 443 ALDSLGLPYVVNEGDGAFYGPKIDFHLE---DSLGRTWQCGTIQLD----FQLPMRF--- 492

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               + GADG+ H    +     G++     ++     G   IW   +AP ++ L+ I  
Sbjct: 493 -ELEYTGADGEKHRPIMIHRVVFGSIERFIGILTEHFAGAFPIW---LAPVQVELMPIAD 548

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +   K+ A L K G  V  D   E+IG +   A L   P  +++G K V    V
Sbjct: 549 RH---NEFTSKVAAELKKRGIRVEVDGRSEKIGFKIREAQLQKIPYMLVIGDKEVETENV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I+ R  G    MS+ +  +         
Sbjct: 606 SIRCRKRGDIGTMSVADFCDMVEKEIREK 634


>gi|148653933|ref|YP_001281026.1| threonyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
 gi|172048584|sp|A5WHD5|SYT_PSYWF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148573017|gb|ABQ95076.1| threonyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
          Length = 644

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 139/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + S G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKALNLF--HMQEQSPGMVFWHPNGWTIYQVLEQYMRKVQKDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG + +Y   M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQIVDRSLWEKSGHWGNYATNMFT-TSSESRDYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F  T    +          L +
Sbjct: 348 RELPIRLAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TQAQIQEEVANFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     + E                   D    +     D    
Sbjct: 407 YKDFGFDQIEMKLSTRPEKRVGTDE-----------------SWDIAEKALADALDSSGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    +     L DSL    +     ++              + A F  
Sbjct: 450 EWEYLPGEGAFYGPKIEF---SLKDSLGRVWQCGTIQVDPNMP--------ERLEAEFVN 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    + +    +G+      ++   + G   +W        +++           D
Sbjct: 499 ENNERETPIMLHRAILGSFERFLGMLIEHYAGWMPVWLAPQQVVVMNIT------DKQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           AC+ + + L   G     D   E+IG +     L   P  +++G K V   +V ++ R  
Sbjct: 553 ACQNVASELQNAGLRAITDLRNEKIGFKIRERTLERIPYMLVLGDKEVESGQVNVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+ + I       +  
Sbjct: 613 ENLGVMSVADFIELVQKAVAQK 634


>gi|307822740|ref|ZP_07652971.1| threonyl-tRNA synthetase [Methylobacter tundripaludum SV96]
 gi|307736344|gb|EFO07190.1| threonyl-tRNA synthetase [Methylobacter tundripaludum SV96]
          Length = 635

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 147/445 (33%), Gaps = 41/445 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E   RD    +  L L      + + G+  W   G      V   IRE+   
Sbjct: 229 QAYLHRLEEAEKRDHRKLAKTLDLF--HSQEEAPGMVFWHEKGWVIYQQVEQYIREKLRV 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG ++ +  +M+      ++     P +      I+   +K
Sbjct: 287 NGYGEVKTPQVVDRSLWERSGHWEKF-GDMIFTTHSENRDYAIKPMNCPCHVQIYNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T    +   +       
Sbjct: 346 SYRDLPIRLAEFGSCHRNEPSGTLHGLMRVRNFVQDDAHIFC-TEGQIQDEVSTFIDMLF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G + + ++  + P                           D    +     +  
Sbjct: 405 DVYKDFGFEEVIIKLSTRPANR-----------------VGDDSVWDKAENALELALNTK 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    +     L D +    +     ++                AT+
Sbjct: 448 GLKWDLQPGEGAFYGPKIEF---SLKDCIGRVWQCGTIQVDFSMPGRLD--------ATY 496

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG     V +    +G++     ++    +     +P  ++P ++ ++NI       
Sbjct: 497 IAEDGSRQVPVMLHRAILGSLERFIGILI---EQHAGTFPLWLSPVQVVVLNITDRHA-- 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   +I   L K G  V  D   E+IG +     +   P  VI+G K +    + ++ +
Sbjct: 552 -EYAAQIMLDLEKQGIRVKIDLRNEKIGFKIREHSMQRVPYLVIIGDKELEQQSITVRTQ 610

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  +S+ E         +  +
Sbjct: 611 KGDDLGSLSIHEFTERLKQEITGRQ 635


>gi|253682125|ref|ZP_04862922.1| threonine--tRNA ligase [Clostridium botulinum D str. 1873]
 gi|253561837|gb|EES91289.1| threonine--tRNA ligase [Clostridium botulinum D str. 1873]
          Length = 637

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 156/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + +   G   + P G    + +    RE   + G
Sbjct: 231 YLHMLEEAKKRDHRKLGKELGLFD--LKEEGPGFPFFYPKGMTLRNTLENYWREMHEKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW +SG +D Y + M      + +     P +      +++S + SY
Sbjct: 289 YGEIRTPIILNENLWHQSGHWDHYKENM-YFTKIDGEDYAIKPMNCPGSILVYKSDLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ L  R E      G+MR R F   DA+ F    + +      +       
Sbjct: 348 RELPIRLGELGLVHRHEYSGALHGLMRVRNFTQDDAHIFMTKEQITSE-ILGVIKMIDNF 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E                   +          ++   
Sbjct: 407 YSLFGFEY-FVELSTRPEDSMGSDE-----------------DWEAATNGLVKALNEAGL 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H           +    R  + G I     +       ++ G
Sbjct: 449 EYKINEGDGAFYGPKIDFHL----------RDCLGRTWQCGTI-QLDFQMPERFDLSYVG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H          G++     ++   + G    W   +AP ++ ++NI  +     +
Sbjct: 498 ADGEKHRPVMAHRVIFGSIERFIGILTEHYAGAFPTW---LAPVQVKIMNITDN---QIE 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C++I   L + G  V  D   E+IG +   A L   P  +++G K ++++ + ++ R  
Sbjct: 552 YCKEIEKTLKENGIRVELDLRNEKIGYKIREAQLQKIPYMLVLGDKEMNENTIAVRSRKQ 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M L + +          
Sbjct: 612 GDLGAMQLVDFVAMVKKEVQEK 633


>gi|238021043|ref|ZP_04601469.1| hypothetical protein GCWU000324_00940 [Kingella oralis ATCC 51147]
 gi|237868023|gb|EEP69029.1| hypothetical protein GCWU000324_00940 [Kingella oralis ATCC 51147]
          Length = 637

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 149/440 (33%), Gaps = 39/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R E    G
Sbjct: 234 YITRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPRGWTLWQVIEQHMRRELTAAG 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG + +Y   M  L     +     P +      IF   ++SY
Sbjct: 292 YQEVKTPQIMDKTFWEKSGHWANYKDNMF-LTSSEKRDYAVKPMNCPGHVQIFNHGLRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +LP    +     R+E      G+MR R F+  DA+ F    + ++ +        ++I
Sbjct: 351 NDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIAEETRAFN-QLVMKI 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S E    A+ G      +       +P E         
Sbjct: 410 YRQFGFHDVSIKLSLRPEKRAGSDEIWDKAEQGLRDALTACGVTWQELPGE--------- 460

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +           
Sbjct: 461 --------GAFYGPKVEYH---IKDALGRSWQCGTIQLD----FVLPERLDAEY---VTR 502

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +   V +    +G++     ++   H G   +W   V    +++       +   D 
Sbjct: 503 DNNRARPVMLHRAILGSLERFIGILIEQHAGSFPLWLAPVQMVVMNIT------EKQADY 556

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           C ++ A+L   G     D   E+IG +        +P Q++VG K + + +V ++     
Sbjct: 557 CREVVAKLQAAGFRAELDLRNEKIGYKIRDNSSQRYPYQIVVGDKEMENGQVAVRK-KAE 615

Query: 425 IREDMSLEEVINYASHRFSN 444
               + +E+ I         
Sbjct: 616 DLGSLKVEDFIERLLEEMKT 635


>gi|209695239|ref|YP_002263168.1| threonyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
 gi|208009191|emb|CAQ79445.1| threonyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
          Length = 642

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 140/441 (31%), Gaps = 40/441 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            + + +   RD       L L    + Q + G+  W   G      +   +RE+      
Sbjct: 233 LIRLEEAAKRDHRKIGKHLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFVREKLTEYDY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y + M       ++     P +      IF   +KSYR
Sbjct: 291 QEVKGPLMMERVLWERSGHWDKYAEAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 350 DLPLRMAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFC-TEAQVQDEVKSCIEMVYDTY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E                   D          + +   
Sbjct: 409 TTFGFENIVVKLSTRPEQRVGSDE-----------------MWDKAEADLQLALESMNIA 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L D L    +     ++       G        AT+ G 
Sbjct: 452 YEIQEGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFALPERLG--------ATYVGE 500

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D + H    +    +G++     ++   + G    W        + +           D 
Sbjct: 501 DNERHTPVMIHRAILGSLERFIGILIEDYAGFFPTWLAPEQAIVMGIT------DKQADY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++I  +L K G  V  D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 555 VQEIAKKLQKNGFRVKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGK 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
                 +++ + +     S  
Sbjct: 615 DLGKFKIDDFVAFLQQEVSTR 635


>gi|126667900|ref|ZP_01738865.1| threonyl-tRNA synthetase [Marinobacter sp. ELB17]
 gi|126627560|gb|EAZ98192.1| threonyl-tRNA synthetase [Marinobacter sp. ELB17]
          Length = 641

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 154/438 (35%), Gaps = 39/438 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  ++E   RD      KL L    + + + G+  W P G      +   +R+  +R
Sbjct: 229 KAYVHRIEEAEKRDHRKVGKKLNLF--HMQEEAPGMVFWHPDGWTIYQKMEQYMRDILHR 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + S  LW +SG +D + + M    +         P +      +F   +K
Sbjct: 287 HGYQEIKTPQIVSRSLWEKSGHWDKFKEGMFT-TESEKHDFAIKPMNCPCHIQVFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    +     R+E      G+MR R F   DA+ F    +      +K      
Sbjct: 346 SYKDLPLRLAEFGSCHRNEASGALHGLMRVRGFTQDDAHIFCEESDIQNE-VSKFIDLLH 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   I  +  + P     S E    ++    Q    +      +P E       
Sbjct: 405 EVYKDFGFTEILYKLSTRPEKRVGSDEVWDKSEAALEQALNREGVKWELLPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    +     L D +    +     ++       G +Y        
Sbjct: 458 ----------GAFYGPKIEF---SLKDCIGRVWQCGTIQVDFSMPGRLGAQY-------V 497

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +   V +    +G+      ++    +     +P  +AP +++++NI  +    R
Sbjct: 498 ADNSERKTPVMLHRAVLGSFERFIGILI---EEYEGAFPSWLAPTQVAILNITDN---QR 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           + CE +  +   +G  V  D   E+IG +     +   P  V+VG K V ++ V ++ R 
Sbjct: 552 EYCENLAKKWDSLGFRVNADLRNEKIGFKIREHTINKVPFLVVVGDKEVENNTVAVRTRK 611

Query: 423 TGIREDMSLEEVINYASH 440
                 +SLE        
Sbjct: 612 GEDLGTLSLEAFEQLLQE 629


>gi|51245280|ref|YP_065164.1| threonyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
 gi|50876317|emb|CAG36157.1| probable threonyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
          Length = 657

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 144/440 (32%), Gaps = 40/440 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           K+   I +   RD      +L L T M      G+  WLP G +    +    + E  R 
Sbjct: 248 KHLNNIEEAKKRDHRKLGKELELFT-MQDSIGPGLPLWLPKGARMRHQIEEFWKAEHYRH 306

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
               +  P +   DLW  SG  D Y   M    D +       P +      ++++  +S
Sbjct: 307 DYELLYTPHIARQDLWKTSGHLDFYADSMYAGMDIDGVTYQIKPMNCPFHVGVYKAKKRS 366

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+ P  + ++   +R E      G+MR R F   DA+ F    +     +  +    L 
Sbjct: 367 YRDFPLRWCELGTVYRYERAGALHGLMRVRSFTQDDAHIFCRPEQLEDEIF-NILDFNLF 425

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G     +   + P     + E                   D    +     +   
Sbjct: 426 ILKSFGFSEYDIYLSTRPEKSVGTDE-----------------NWDKSTNALKLALEKKG 468

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I       Y    D+   K+ D L  + + S   ++    F    ++      ++ 
Sbjct: 469 LKYEIDPGEGVFYGPKIDI---KIKDQLGRSWQCSTVQVD----FNLPERF----ELSYV 517

Query: 304 GADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G+D  +H   M    +     R +  +IE       + +    A                
Sbjct: 518 GSDNSEHQPIMIHRALMGSLERFIGVLIEHHAGAFPLWFSPVQARILNIT-------DDQ 570

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  EK+YA L      V  D   E++  +   A L+  P  +I+G K   D  V ++ R
Sbjct: 571 IEYGEKVYAELRAADIRVEKDLRNEKLNYKIREAQLVKTPYMLIIGDKEKEDGTVTVRMR 630

Query: 422 LTGIREDMSLEEVINYASHR 441
                + M+++E +      
Sbjct: 631 NGKNLDPMTVQEFVALVLEE 650


>gi|269792334|ref|YP_003317238.1| threonyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099969|gb|ACZ18956.1| threonyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 631

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 84/440 (19%), Positives = 151/440 (34%), Gaps = 41/440 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      ++ L +  I     G   + P G   L+ +    + E  R G
Sbjct: 228 YLNRLEEARQRDHRKIGREMDLFS--IQPEGPGFPFFHPKGMVILNELVDFWKREHKRRG 285

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG +D Y   M      +D+     P +      +F+S  +SY
Sbjct: 286 YNEIRTPLILDRSLWERSGHWDHYRDNM-YFTSIDDRPFAIKPMNCPGGILVFKSSTRSY 344

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ +  R E      G+MR R F   DA+ +    +        +      +
Sbjct: 345 RDLPLRMSELGVVHRHERSGVLHGLMRVRCFTQDDAHIYCTPDQVGDE-IAGVIDLMKYV 403

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + ++   +  +   + P     S E                   +          +   +
Sbjct: 404 YSQVFGFNYRVELSTRPDNYMGSLE-----------------LWNLAEEKLKQTLEATGT 446

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D H E   DS+    +     ++    F    K+      ++ G
Sbjct: 447 DYKINPGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQMPEKFD----VSYVG 495

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG DH    +     G++     ++   + G    W   V    + +           D
Sbjct: 496 ADGADHRPVMIHRTVFGSLERFLGILIEHYAGAFPFWLAPVQVRVLPVKP------EFED 549

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A L   G  V  D   E++G +   A L   P  +++G+K      V ++HR  
Sbjct: 550 RSRQVEAALKSWGVRVEVDVRDEKLGKKIRDAQLSKVPYMIVIGAKEAETGGVSVRHRSD 609

Query: 424 GIREDMSLEEVINYASHRFS 443
           G    MS++ + +     F 
Sbjct: 610 GDLGTMSMDVLRDRLQGEFK 629


>gi|311105446|ref|YP_003978299.1| threonyl-tRNA synthetase [Achromobacter xylosoxidans A8]
 gi|310760135|gb|ADP15584.1| threonyl-tRNA synthetase [Achromobacter xylosoxidans A8]
          Length = 650

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 144/447 (32%), Gaps = 41/447 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E  R D      +L L        + G+  W P G      V   +R     
Sbjct: 234 EAYLHMLEEAERRDHRKIGRELELF--HFQDEAPGLIFWHPKGWALWQQVEQYMRSVYRD 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +D+Y + M    +  ++     P +      IF + + 
Sbjct: 292 NGYQEVKAPQILDISLWKKTGHWDNYRENMFT-TESENRVYGLKPMNCPGHVQIFNAGLH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + +     R+E      G+MR R F   D + F    +              
Sbjct: 351 SYRELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIFCTEEQLQDEC-ADFTALLQ 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   +  +  + P     S E    A+    +            P E       
Sbjct: 410 KVYRDFGFTEVLYKVATRPEKRIGSDEVWDTAEAALMESLRRTGCEFEVSPGE------- 462

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    +     L D++  + +     ++       G        A +
Sbjct: 463 ----------GAFYGPKVEY---TLKDAIGRHWQCGTIQVDFSMPVRLG--------AEY 501

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +      +    +G++     ++  +H G    W   V      +       +  
Sbjct: 502 VDQNDQRRPPVMLHRAILGSLERFIGMLIENHAGAMPPWLAPVQAVVCCI------SEPS 555

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   +I   L K G  V  D  GE+I  +     L   P  ++VG K   +  V ++  
Sbjct: 556 ADYAAEITQSLKKQGFRVESDLRGEKITRKIREHSLQKVPYILVVGDKEKQNGTVAVRGL 615

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPV 448
                  ++ +E +   S   S  R V
Sbjct: 616 GGLDLGAIAYDEFVARLSEDVSTRRDV 642


>gi|153955810|ref|YP_001396575.1| threonyl-tRNA synthetase [Clostridium kluyveri DSM 555]
 gi|219856177|ref|YP_002473299.1| hypothetical protein CKR_2834 [Clostridium kluyveri NBRC 12016]
 gi|189083603|sp|A5N258|SYT_CLOK5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783517|sp|B9E5W0|SYT_CLOK1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146348668|gb|EDK35204.1| ThrS [Clostridium kluyveri DSM 555]
 gi|219569901|dbj|BAH07885.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 637

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 154/442 (34%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +++E   RD      +L L +  IH+   G   + P G    + +    RE   +  
Sbjct: 231 YLKLMEEAKKRDHRKLGKELDLFS--IHEEGPGFPFFHPKGMVIRNTLQNFWREMHYKAD 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M      +D      P +      ++++ I+SY
Sbjct: 289 YSEIMTPIILNEELWHRSGHWDHYKENM-YFTKIDDGNYAIKPMNCPGSILVYKNDIRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + ++ +  R E      G+MR R F   DA+ F    + +      +       
Sbjct: 348 RDLPKRYAEMGVVHRHEKSGALHGLMRVRCFTQDDAHIFVTKDDIADEIIK-VIDLIDNF 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E                   +            +  
Sbjct: 407 YKIFGFEY-FVELSTRPEDSMGSDE-----------------DWEAATEGLKNALKMVGL 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H           K    R  + G +     +        + G
Sbjct: 449 DYKINEGDGAFYGPKIDFHL----------KDCIGRTWQCGTV-QLDFQMPEKFDLNYIG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++    +     +P  +AP ++ ++NI        D
Sbjct: 498 ADGEKHRPVMIHRVVFGSIERFIGILI---EHYAGAFPAWIAPVQVQVMNIT---DAQAD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L +    V  D   E+IG +   A +   P  +I+G K + D  + ++ R  
Sbjct: 552 YVAEVAKTLKENNIRVECDIRNEKIGYKIREAQMHKVPYMIILGDKEMKDKNISVRSRKE 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    MSLE+ I          
Sbjct: 612 GDIGAMSLEDFILKLKEEIDKK 633


>gi|260682273|ref|YP_003213558.1| threonyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260685872|ref|YP_003217005.1| threonyl-tRNA synthetase [Clostridium difficile R20291]
 gi|260208436|emb|CBA60998.1| threonyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260211888|emb|CBE02332.1| threonyl-tRNA synthetase [Clostridium difficile R20291]
          Length = 670

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 155/435 (35%), Gaps = 41/435 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L   MI +   G   +LP G +  + +    RE   + G IE+  P
Sbjct: 269 AKKRDHRKLGKELGLF--MIPEEGPGFPMFLPKGMELKNELLKFWREIHRKAGYIEIESP 326

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW  SG +  Y + M  +   +D+     P +       + S + SYR+ P   
Sbjct: 327 IILNRKLWETSGHWYHYKENMYTVK-IDDEDYAIKPMNCPGGLIYYNSQLHSYRDFPMRV 385

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R EL     G+MR R F   D++ F L  +       K   + +   ++    
Sbjct: 386 AELGRVHRHELSGALQGLMRVRAFTQDDSHIFMLPEQIKDE--IKGVANLIDGIYKTFGF 443

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     S E                   +          +++    +I E 
Sbjct: 444 EYNLELSTRPENSMGSDE-----------------EWEAAENGLREALEELGLPYTINEG 486

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    D H   L D L    +     +++     F          T+ G DG+ H 
Sbjct: 487 DGAFYGPKIDFH---LKDCLGRTWQCGTIQLDMQLPRQFDN--------TYIGQDGEKHR 535

Query: 312 V-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              +     G++     ++    +     +P  ++P ++ ++ I        D   ++  
Sbjct: 536 PVMIHRVAFGSIERFIGILI---EHYAGKFPVWLSPTQVKILPISDK---FMDYANEVKK 589

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G  V  DD  E+IG +   A L   P  +IVG K V+D+ V ++ R  G    + 
Sbjct: 590 ELFDKGIRVELDDRAEKIGFKIREAQLEKVPYMLIVGEKEVADNNVSVRSRDKGEIGSIK 649

Query: 431 LEEVINYASHRFSNN 445
           L+E I   S    + 
Sbjct: 650 LDEFIASISKEIESR 664


>gi|296449369|ref|ZP_06891150.1| threonine--tRNA ligase [Clostridium difficile NAP08]
 gi|296880697|ref|ZP_06904650.1| threonine--tRNA ligase [Clostridium difficile NAP07]
 gi|296261715|gb|EFH08529.1| threonine--tRNA ligase [Clostridium difficile NAP08]
 gi|296428315|gb|EFH14209.1| threonine--tRNA ligase [Clostridium difficile NAP07]
          Length = 670

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 156/435 (35%), Gaps = 41/435 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L   MI +   G   +LP G +  + +    RE   + G IE+  P
Sbjct: 269 AKKRDHRKLGKELGLF--MIPEEGPGFPMFLPKGMELKNELLKFWREIHRKAGYIEIESP 326

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW  SG +  Y + M  +   +D+     P +       + S + SYR+ P   
Sbjct: 327 IILNRKLWETSGHWYHYKENMYTVK-IDDEDYAIKPMNCPGGLIYYNSQLHSYRDFPMRV 385

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R EL     G+MR R F   D++ F L  +       K   + +   ++    
Sbjct: 386 AELGRVHRHELSGALQGLMRVRAFTQDDSHIFMLPEQIKDE--IKGVANLIDGIYKTFGF 443

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +   + P     S+E                   +          +++    +I E 
Sbjct: 444 EYNLELSTRPENSMGSNE-----------------EWEAAENGLREALEELGLPYTINEG 486

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    D H   L D L    +     +++     F          T+ G DG+ H 
Sbjct: 487 DGAFYGPKIDFH---LKDCLGRTWQCGTIQLDMQLPRQFDN--------TYIGQDGEKHR 535

Query: 312 V-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              +     G++     ++    +     +P  ++P ++ ++ I        D   ++  
Sbjct: 536 PVMIHRVAFGSIERFIGILI---EHYAGKFPVWLSPTQVKILPISDK---FMDYANEVKK 589

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G  V  DD  E+IG +   A L   P  +IVG K V+D+ V ++ R  G    + 
Sbjct: 590 ELFDKGIRVELDDRAEKIGFKIREAQLEKVPYMLIVGEKEVADNNVSVRSRDKGEIGSIK 649

Query: 431 LEEVINYASHRFSNN 445
           L+E I   S    + 
Sbjct: 650 LDEFIASISKEIESR 664


>gi|71282219|ref|YP_269610.1| threonyl-tRNA synthetase [Colwellia psychrerythraea 34H]
 gi|123747383|sp|Q480A9|SYT_COLP3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71147959|gb|AAZ28432.1| threonyl-tRNA synthetase [Colwellia psychrerythraea 34H]
          Length = 636

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 154/443 (34%), Gaps = 40/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y + + +   RD       L L      + + G+  W   G      +   IRE+ +   
Sbjct: 232 YIVRLAEAEKRDHRKIGKTLDLF--HWQEEAPGMVFWHNDGWTIYTELEKFIREKLHEYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D Y   M        +     P +      IF   +KSY
Sbjct: 290 YDEVKAPMMMDRSLWEKSGHWDKYADGMFTTT-SEKREYAIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F +     +    K       +
Sbjct: 349 RDLPLRIAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFCM-ESQVQAEVKKCIEMVYDV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + ++  + P     S E    A+ G  Q     +     +P E         
Sbjct: 408 YGSFGFEDVVVKLSTRPDNRIGSDEIWDKAEAGLAQALTDSNIAFEYLPGE--------- 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++       G        AT+ G
Sbjct: 459 --------GAFYGPKIEF---TLMDCLGRAWQCGTVQLDFALPERLG--------ATYVG 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D + +    +    +G++     ++     GK   W   ++P + +++NI         
Sbjct: 500 EDNERYTPVMIHRAILGSLERFIGILIEEFTGKFPTW---LSPIQTTIMNITDK---QAP 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            CEK+  +L + G     D   E+IG +     L   P  ++VG K +   ++ ++ R  
Sbjct: 554 YCEKVVKKLKENGFRAKIDLRNEKIGFKIREHTLKRVPYLLVVGDKEMESGEISVRTRSG 613

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                MS+++ I   S    + +
Sbjct: 614 EDLGKMSVDDFIAKLSDEVKSRQ 636


>gi|119945879|ref|YP_943559.1| threonyl-tRNA synthetase [Psychromonas ingrahamii 37]
 gi|166225485|sp|A1SWU5|SYT_PSYIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119864483|gb|ABM03960.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Psychromonas
           ingrahamii 37]
          Length = 635

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 145/448 (32%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++   +L  L+E   RD      +L L    + + + G+  W   G      +   +RE+
Sbjct: 226 KQLNAYLKRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHSNGWTIYRELEKYVREQ 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW +SG +  Y   M       ++     P +      IF  
Sbjct: 284 TEAYDYQEVKAPQILDRALWEKSGHWGKYKDNMF-CTSSENRDYAIKPMNCPGHLQIFNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +      +    
Sbjct: 343 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRAFTQDDAHIFCTEEQILDE-VSACIQ 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G   I ++  + P                           D    +     
Sbjct: 402 MVFECYKTFGFDDIAVKLSTRPDQR-----------------VGDDATWDKAEAALANAL 444

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   ++    A Y    +     L+D L    +     ++                
Sbjct: 445 TTNNINYGVLPGEGAFYGPKIEF---TLYDCLGRGWQCGTIQLDFSMPGRLD-------- 493

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A+F G D + H    +    +G++     ++    +    ++P  ++P ++ ++NI    
Sbjct: 494 ASFVGEDNERHTPVMIHRAILGSLERFIGILT---EEYAGVYPTWLSPKQVVVMNITDK- 549

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  +++  +L K G     D   E+IG +     L   P  +++G + V   +V +
Sbjct: 550 --QSAFVDEVVNKLKKSGIRAISDLRNEKIGFKIREHTLKRVPYLLVIGDQEVEAGEVAV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R         +++   Y        R
Sbjct: 608 RTRKGDDLGKFKVDDFAAYIKEEIITRR 635


>gi|89073900|ref|ZP_01160406.1| threonyl-tRNA synthetase [Photobacterium sp. SKA34]
 gi|89050228|gb|EAR55732.1| threonyl-tRNA synthetase [Photobacterium sp. SKA34]
          Length = 631

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 81/436 (18%), Positives = 145/436 (33%), Gaps = 40/436 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G      +   IRE+ N    
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFIREKLNEYDY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T    +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEAQVQQEVTSCIEMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P     S     + D  E+ +  + + M+ P   +          
Sbjct: 410 KTFGFDNIVVKLSTRPEKRVGSD---AMWDKAESDLITALESMEIPFEIQ---------- 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    +     L D L    +     ++       G        AT+ G 
Sbjct: 457 ----EGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFALPERLG--------ATYVGE 501

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D + H    +    +G++     ++   + G    W        +++           + 
Sbjct: 502 DNERHTPVMIHRAILGSLERFIGILIEDYAGFFPTWLAPQQAVVMNIT------DAQSEY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++I  +L K G  V  D   E+IG +     L   P  ++ G K V    V ++ R   
Sbjct: 556 VQEIVEKLKKCGIRVNADLRNEKIGFKIREHTLKRVPFMLVCGDKEVEAGVVAVRTRKGK 615

Query: 425 IREDMSLEEVINYASH 440
                 ++E++ +   
Sbjct: 616 DLGKFKIDELVAFMQE 631


>gi|258592606|emb|CBE68915.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS) [NC10
           bacterium 'Dutch sediment']
          Length = 680

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 146/445 (32%), Gaps = 42/445 (9%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E  R D      +L L +    +   G+  W P G      +  + RE+  + G 
Sbjct: 260 LFLLEEAKRRDHRRLGRELELFSVH-DEIGGGLVLWHPKGALVRKLIEDLWREQHLKNGY 318

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P +  A LW  SG  D Y + M    +         P +      +F+S + SYR
Sbjct: 319 DLVYTPHVGRATLWETSGHLDFYQEFMYPRMEMEGNDYYVKPMNCPFHIKLFQSKVHSYR 378

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP  F ++   +R E      G++R R F   DA+ F    +                 
Sbjct: 379 ELPVRFAELGTVYRFERAGVLHGLLRVRGFTQDDAHIFCTPQQMVSE------------- 425

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                 +  +      +       +     T   +    ++  +    +     DD    
Sbjct: 426 -----VARAVSFSLAFLSSFGFDRYDAYIATRPEKAIGDQELWNDATEALRRAADDAGLA 480

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I +   A Y    D+   K+ D+L    + +    +    F    ++      T+ G 
Sbjct: 481 YQIDDGGGAFYGPKIDL---KVRDALGRAWQCTTVQFD----FNLPERFD----ITYVGE 529

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D + H    +    +G++     V+   H G    W             +       +  
Sbjct: 530 DNRPHRPFMVHRAILGSLERFFGVLVEHHAGAFPTW------LAPVQARLVPVADRFQPY 583

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L   G     D   E++G +   A++   P  ++VG K  +   V ++ R   
Sbjct: 584 AQQVSEQLRAAGIRTETDVRNEKVGYKIRDAEMQKTPYILVVGEKEATSGAVSVRGRGGR 643

Query: 425 IREDMSLEEVINYASHRFSNNRPVL 449
               M +++            +P L
Sbjct: 644 DMGVMPIDQFAAAIQEEL---KPAL 665


>gi|121634517|ref|YP_974762.1| threonyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|120866223|emb|CAM09963.1| putative threonyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|325131827|gb|EGC54527.1| threonyl-tRNA synthetase [Neisseria meningitidis M6190]
          Length = 648

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 158/441 (35%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S E    A+ G      +       +P E         
Sbjct: 418 YKQFGFHDVAVKLSLRPEQRAGSDEVWDKAEQGLRDALTACGVEWEELPGE--------- 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 469 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 509

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 510 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 563

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 564 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 622

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 623 EDLGSLDLDDFIAQLQQEITD 643


>gi|284799642|ref|ZP_05984463.2| threonine--tRNA ligase [Neisseria subflava NJ9703]
 gi|284797591|gb|EFC52938.1| threonine--tRNA ligase [Neisseria subflava NJ9703]
          Length = 643

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 159/438 (36%), Gaps = 41/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 237 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 294

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 295 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 354 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCAEDQIVDEARAFN-ELLVRI 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S E    A+ G      +       +P E         
Sbjct: 413 YKQFGFHDVAVKLSLRPEQRAGSDEVWDKAEQGLRDALTACGVEWEELPGE--------- 463

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    ++A +  
Sbjct: 464 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LNAEYVT 504

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 505 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 558

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 559 YCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 617

Query: 424 GIREDMSLEEVINYASHR 441
                +++++ I      
Sbjct: 618 EDLGSLNVDDFIAQLQQE 635


>gi|325137877|gb|EGC60452.1| threonyl-tRNA synthetase [Neisseria meningitidis ES14902]
          Length = 637

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 158/441 (35%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S E    A+ G      +       +P E         
Sbjct: 407 YKQFGFHDVAVKLSLRPEQRAGSDEVWDKAEQGLRDALTACGVEWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 458 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|152980466|ref|YP_001353177.1| threonyl-tRNA synthetase [Janthinobacterium sp. Marseille]
 gi|166223349|sp|A6SY30|SYT_JANMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|151280543|gb|ABR88953.1| threonyl-tRNA synthetase [Janthinobacterium sp. Marseille]
          Length = 635

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 152/443 (34%), Gaps = 39/443 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L        + + G+  W P G      V   +R+    
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDFF--HFQEEAPGLIFWHPKGWSIWQQVEQYMRKVYQD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW ++G +D+Y + M  + +  +++    P +      I+ S ++
Sbjct: 287 NDYQEVKAPQILDRGLWEKTGHWDNYRENMF-VTESENRSYALKPMNCPGHVQIYNSDMR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F   D + F    + ++          +
Sbjct: 346 SYRDLPLRYGEFGQCHRNEPSGALHGMMRVRGFTQDDGHIFCTEEQIAEE-VTAFHAQAM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G ++I ++    P     + E                   D    S  +     
Sbjct: 405 AVYAAFGFENIDVKLALRPDSRIGTEE-----------------SWDIAEESLRSALRAC 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               + +    A Y    + H   L DSL    +V    I+       G +Y        
Sbjct: 448 GVSWTELPGEGAFYGPKIEYH---LKDSLGRAWQVGTVQIDPSMPGRLGAEY-------V 497

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              + +   + +    +G++     ++   + G   +W        + +  +   D    
Sbjct: 498 AVDNTRKTPIMLHRAIVGSLERFIGILIEHYAGALPLWLA-----PVQIAVLNISDAQA- 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  + +   L K G  V  D   E+I  +     +   P  +++G K      V ++ R 
Sbjct: 552 EYAQAVAQNLKKQGFRVHLDLRNEKITYKIREHSVQKLPYIIVIGDKERDAGTVAVRARG 611

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 M ++ +++  +      
Sbjct: 612 NVDLGVMPVDLLVDRLNSEIDAK 634


>gi|292493207|ref|YP_003528646.1| threonyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
 gi|291581802|gb|ADE16259.1| threonyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
          Length = 644

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 159/445 (35%), Gaps = 39/445 (8%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIRE 59
           +  K +L  L+E   RD      +L L +  I  +   G+  W P+G +    +    RE
Sbjct: 226 KALKAYLHRLEEAEKRDHRRIGTELDLFS--IQDEAGGGLVFWHPMGARIRQVIEDFWRE 283

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                G   +  P +    LW  SG  D Y + M +  + + +     P +      +++
Sbjct: 284 RHRAAGYETLYTPHIAHQQLWQTSGHTDFYRESMYQPMEEDHQLYQLKPMNCPFHVLVYK 343

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             ++SYR LP  + ++   +R E+     G+MR R F   DA+ F    +        + 
Sbjct: 344 GRLRSYRELPLRWAELGTVYRHEMSGALHGLMRVRGFTQDDAHIFCREEQIEDE-ILGIL 402

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    G +   +   + P                      S    +    +  + 
Sbjct: 403 DLTLEMLSAFGFERYEVDLSTRPEKS-----------------VGSDAIWERATQALRSA 445

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +      ++ E   A Y    D+   K+ D++    + S   ++    F    ++ +  
Sbjct: 446 LEKKGLDYAVDEGGGAFYGPKIDI---KIEDAIGRKWQCSTVQLD----FNLPERFEMEY 498

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A       +   + +    +G++     V+   ++     +P  +AP +++++NI    
Sbjct: 499 VAE---DGARHQPIMIHRAVLGSLERFFGVLIEHYE---GKFPPWLAPVQVAVMNITDR- 551

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +   ++   L   G     D   E+IG +     L   P  +++G + V +  V +
Sbjct: 552 --QAEYACQVEETLKNKGFRSLLDLRNEKIGFKIREHTLRRVPYLLVIGDREVENQTVAV 609

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R +     MSL+  I       +
Sbjct: 610 RTRYSKDLGAMSLDAFIERLDADIA 634


>gi|238919782|ref|YP_002933297.1| threonyl-tRNA synthetase [Edwardsiella ictaluri 93-146]
 gi|259516479|sp|C5B846|SYT_EDWI9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238869351|gb|ACR69062.1| threonyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146]
          Length = 642

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      + A +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D           +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------IWDRAEEDLAAALQENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    + S    A++ G
Sbjct: 451 PFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 ENNERVVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQAVVMNIT------DSQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVEELSKKLQAAGIRVKSDLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+++VI        + 
Sbjct: 614 KDLGVMSIDDVIKKLQQEIRSR 635


>gi|282850470|ref|ZP_06259849.1| threonine--tRNA ligase [Veillonella parvula ATCC 17745]
 gi|282579963|gb|EFB85367.1| threonine--tRNA ligase [Veillonella parvula ATCC 17745]
          Length = 636

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 145/441 (32%), Gaps = 40/441 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I +   G   +LP G    + +    RE  +   
Sbjct: 233 YLHMLEEAAKRDHRKLGKELGLFV--IKEEGPGFPFFLPKGMALRNELENFWREVHHDFD 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S  LW  SG +D Y + M      +D+     P +      ++++ + SY
Sbjct: 291 YEEIRTPIILSKHLWETSGHWDHYRENMYT-TIIDDEEYAIKPMNCPGGILVYQNEMHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+ P  + ++ L  R EL     G+ R R F   DA+ F L  +        + +     
Sbjct: 350 RDFPLRYAELGLVHRHELSGALHGLFRVRAFTQDDAHVFMLPDQMQTELMKVIELF---- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                            I      ++ V   T            +    +     +    
Sbjct: 406 ---------------DRIYSQFGLKYHVELSTKPDNAMGDDAIWEQATDALRNAIEAKGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D H E   DSL    +     +++                 + G
Sbjct: 451 PYVINPGDGAFYGPKLDYHIE---DSLGRTWQCGTIQLDMNLP--------ERFQIEYIG 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   M              I    +     +P  +AP ++ ++ I    +   + 
Sbjct: 500 EDGQKHRPIMIHRACFGSMERFIGIL--TEHYAGAFPTWMAPVQVKILPI---SEKHVEY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  ++ +    V  DD  E+IG +   A +   P  ++VG K V +  V ++     
Sbjct: 555 AKELAKQMHRDYVRVEVDDRSEKIGYKIRQAQMAKVPYMLVVGDKEVEEGTVNVRKHGGD 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
               +  EE  N         
Sbjct: 615 ELGSVPFEEFFNSIKIEIKER 635


>gi|88706032|ref|ZP_01103740.1| threonyl-tRNA synthetase [Congregibacter litoralis KT71]
 gi|88699746|gb|EAQ96857.1| threonyl-tRNA synthetase [Congregibacter litoralis KT71]
          Length = 645

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 143/438 (32%), Gaps = 40/438 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      KL L      + + G+  W P G      +   +RE+Q 
Sbjct: 228 LKQYLHRIEEAEKRDHRKIGKKLDLF--HTQEEAPGMVFWHPQGWTIYQVIEQYMREQQR 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P L    LW +SG  D +G +M  +   +++     P +      +F   +
Sbjct: 286 ANGYQEIKTPQLVDMSLWEKSGHADKFGDDMF-MLQADEREFAVKPMNCPCHVQVFNQGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    +     R+E      G+MR R F   D + F    +      +      
Sbjct: 345 RSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDGHIFCTEEQIQSE-VSTFIDFL 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G   +  R  + P     S E    A+        +++     +P E      
Sbjct: 404 HAVYRDFGFDEVIYRLSTRPPKRVGSDEDWDRAEKALADALDAQELDWQELPGE------ 457

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y    +     L D +    ++    ++                A 
Sbjct: 458 -----------GAFYGPKIEF---SLKDCIGRVWQMGTVQVDFSMPGRLD--------AQ 495

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DG       +    +G+      ++  + +G   +W        +++       + 
Sbjct: 496 YVAEDGSRKTPVMLHRAILGSFERFIGILIENFEGAFPVWLAPKQAVVLNIT------EK 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  + +   L   G  VF D   E+IG +     +   P  ++VG K V    V ++ 
Sbjct: 550 QDEYVQFVEDSLKNKGFRVFSDLRNEKIGFKIREHTIQRIPYLLVVGEKEVEAKTVAVRS 609

Query: 421 RLTGIREDMSLEEVINYA 438
           R       MS+E      
Sbjct: 610 RNGEDLGTMSIEAFAEIL 627


>gi|311693962|gb|ADP96835.1| threonyl-tRNA synthetase [marine bacterium HP15]
          Length = 641

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 154/441 (34%), Gaps = 39/441 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      KL L    + + + G+  W P G      +   +R +Q  
Sbjct: 229 KAYLHRLEEAEKRDHRKVGKKLGLF--HMQEEAPGMVFWHPDGWSLYQEIEQYMRRKQQE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + S +LW +SG +D +  +M    +         P +      +F   +K
Sbjct: 287 HGYKEIKTPQVVSRNLWEKSGHWDKFKDDMFT-TESEKHDYAIKPMNCPCHVQVFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    +     R+E      G+MR R F   DA+ F       +   +       
Sbjct: 346 SYKDLPLRLAEFGSCHRNEASGALHGLMRVRGFTQDDAHIFCEEDAIQQE-VSSFIEMLH 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G   I  +  + P     S E    A+    +    +      +P E       
Sbjct: 405 EIYTDFGFTEILYKLSTRPEKRVGSDEVWDKAEAALEEALNREGVDWELLPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    +     L D +    +     ++       G +Y        
Sbjct: 458 ----------GAFYGPKIEF---SLKDCIGRVWQCGTIQVDFSMPGRLGAQY-------V 497

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +   V +    +G+      ++   ++G    W   +AP +++++NI  +    R
Sbjct: 498 ADNSERKTPVMLHRAVLGSFERFIGILIEEYEGAFPTW---LAPTQVAILNITDN---QR 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D C+ +  +   +G  V  D   E+IG +     L   P  V+VG K V ++ V ++ R 
Sbjct: 552 DYCQNLAKKWDSLGYRVNADLRNEKIGFKIREHTLNKVPYLVVVGDKEVENNAVAVRTRK 611

Query: 423 TGIREDMSLEEVINYASHRFS 443
                 +SLE           
Sbjct: 612 GEDLGTLSLEAFEQLLQKDVE 632


>gi|330951866|gb|EGH52126.1| threonyl-tRNA synthetase [Pseudomonas syringae Cit 7]
          Length = 640

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 147/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YILRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M    +   +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TESESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES-AAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E                   D    +  +  D    
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDE-----------------LWDRAESALASALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++    F    + S    A +  
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLD----FNLPIRLS----AEYVS 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKNPVMLHRAILGSFERFIGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +   + +   S  
Sbjct: 613 ADLGSMPVAQFAEFLAQAVSRR 634


>gi|289673298|ref|ZP_06494188.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
 gi|330898079|gb|EGH29498.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 640

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 147/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YILRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M    +   +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TESESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES-AAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E                   D    +  +  D    
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDE-----------------LWDRAESALASALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++    F    + S    A +  
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLD----FNLPIRLS----AEYVS 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKNPVMLHRAILGSFERFIGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +   + +   S  
Sbjct: 613 ADLGSMPVAQFAEFLAQAVSRR 634


>gi|253998429|ref|YP_003050492.1| threonyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|313200504|ref|YP_004039162.1| threonyl-tRNA synthetase [Methylovorus sp. MP688]
 gi|253985108|gb|ACT49965.1| threonyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|312439820|gb|ADQ83926.1| threonyl-tRNA synthetase [Methylovorus sp. MP688]
          Length = 640

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 84/438 (19%), Positives = 146/438 (33%), Gaps = 41/438 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L      +   + G+  W P G      V   +R    +
Sbjct: 234 EAYLHMLEEAEKRDHRKLGKQLDYF--HMQDEAPGMVFWHPRGWNLWQEVEQYMRGLFRQ 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  PT+    LW +SG + +Y + M       ++     P +      IF S + 
Sbjct: 292 YGYQEVKTPTIMDRSLWEKSGHWQNYRENMFT-TSSENRDYAVKPMNCPGHIQIFNSGLH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F  T +  K       V   
Sbjct: 351 SYRDLPLRLAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFC-TEDQVKQEVADFIVMLY 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           + +   G   + ++  + P     S E                   D    S      + 
Sbjct: 410 QAYKDFGFNDVLVKLSTRPEKRVGSDE-----------------TWDKAEASLAAALREN 452

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    +     L DSL    +     ++       G        A +
Sbjct: 453 NLAFDLQPGEGAFYGPKIEF---TLKDSLGRLWQCGTIQLDFNLPERLG--------AEY 501

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D    H V +    +G+M     ++    +      P  +AP +  ++NI       
Sbjct: 502 VAEDNTRKHPVMLHRAIVGSMERFLGILI---ENYAGAMPTWLAPVQAMVLNITDS---Q 555

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +++ A L K G  V  D   E+I  +     L   P  ++ G + +   +V ++ R
Sbjct: 556 SAYVQEVVAELRKNGFRVDSDLRNEKITYKIREHSLQKLPYLLVAGDREMQSGQVAVRTR 615

Query: 422 LTGIREDMSLEEVINYAS 439
                  MS+   I    
Sbjct: 616 KGEDLGSMSVSAFIERLK 633


>gi|239623178|ref|ZP_04666209.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522545|gb|EEQ62411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 643

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 148/442 (33%), Gaps = 39/442 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
            Y   + +   RD      +L L   M  +   G   +LP G    + +    RE   R 
Sbjct: 238 NYLTMMEEAKKRDHRKLGKELGLF--MFAEEGPGFPFFLPKGMTLKNTLIDYWREIHQRE 295

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+S P + S  LW  SG +D Y   M      +++     P +      ++++   S
Sbjct: 296 GYQEVSTPIILSRKLWENSGHWDHYKDNMYT-TVIDEEDYAVKPMNCPGGMLVYKNQPHS 354

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ L  R E   +  G+MR R F   DA+ F    +        +      
Sbjct: 355 YRDLPLRVGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMRDDQIEDE-IKGVTRLINE 413

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++ + G +   +   + P     S E                   +          DD+ 
Sbjct: 414 VYTQFGFEYF-VELSTRPEDSMGSDE-----------------DWEMATNGLKKALDDMG 455

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   L DSL    +     ++    F    ++ L  +A   
Sbjct: 456 LEYIVNEGDGAFYGPKIDFH---LRDSLGRTWQCGTIQLD----FQMPQRFDLEYTAE-- 506

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               K   + +     G++     ++     GK  +W   V    I +       +   +
Sbjct: 507 -DGSKKRPIMIHRVCFGSIERFIGILIEHFAGKFPVWLAPVQVKVIPV------SEKSME 559

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +Y +L   G     D   E++G +   A L   P  +++G K  ++  + ++ R  
Sbjct: 560 YATGVYEKLKAAGIRTELDHKDEKVGYKIRQAQLEKVPYMLVLGEKEAAEGAITVRSRDK 619

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G      LE+ I          
Sbjct: 620 GDLGAAVLEDFIADIKKMVEAK 641


>gi|303229391|ref|ZP_07316181.1| threonine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515927|gb|EFL57879.1| threonine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 636

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 146/441 (33%), Gaps = 40/441 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I +   G   +LP G    + +    RE  +   
Sbjct: 233 YLHMLEEAAKRDHRKLGKELGLFV--IKEEGPGFPFFLPKGMALRNELENFWREVHHDFE 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +D Y + M      +D+     P +      ++++ + SY
Sbjct: 291 YDEIRTPIILNKHLWETSGHWDHYRENMYT-TIIDDEEYAIKPMNCPGGILVYQNEMHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + ++ L  R EL     G+ R R F   DA+ F L  +        + +     
Sbjct: 350 RDLPLRYAELGLVHRHELSGALHGLFRVRAFTQDDAHVFMLPEQMQSELMKVIELF---- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                            I      ++ V   T            +    +     +    
Sbjct: 406 ---------------DRIYSQFGLKYHVELSTKPDNAMGDDAIWEAATEALRNAIEAKGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D H E   DSL    +     +++              +  + G
Sbjct: 451 DYVINPGDGAFYGPKLDYHIE---DSLGRTWQCGTIQLDMNLP--------ERFNVEYIG 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   M              I    +     +P  +AP ++ ++ I    +   + 
Sbjct: 500 EDGQKHRTIMIHRACFGSMERFIGIL--TEHYAGAFPTWMAPVQVKVLPI---SEKHVEY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  ++      V  DD  E+IG +   A +   P  ++VG K + D+ V ++     
Sbjct: 555 ANQLAKQMRHDYVRVEVDDRNEKIGYKIRQAQMEKVPYMLVVGDKEMEDNSVNVRKHGGD 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
               +  +E  N         
Sbjct: 615 ELGTVPFDEFFNSIKIEIKER 635


>gi|118595089|ref|ZP_01552436.1| Threonyl-tRNA synthetase, class IIa [Methylophilales bacterium
           HTCC2181]
 gi|118440867|gb|EAV47494.1| Threonyl-tRNA synthetase, class IIa [Methylophilales bacterium
           HTCC2181]
          Length = 635

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 146/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L    +  ++ G+  W P G      V   +R+   
Sbjct: 228 LKEYLYRLEEAEKRDHRKLGKQLDLF--HMQDNAPGMVFWHPKGWSLWLAVEDYMRQMFK 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  PT+    LW +SG +++Y   M       ++     P +     ++F + +
Sbjct: 286 DYGYKEIKTPTIIDKSLWEKSGHWENYQDNMFT-TASENRVYAVKPMNCPGHVEVFNNTL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    +     R+E      G+MR R F   DA+ F  T +  K          
Sbjct: 345 HSYRDLPLRLAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFC-TEDQIKEEVMVFNDML 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            + +   G K I +   + P     S E                   D    +  +   +
Sbjct: 404 FKAYADFGFKDIVVMLSTRPEKRVGSDE-----------------VWDRAEEALESALKE 446

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                ++     A Y    +     L DSL    +     ++       G        A 
Sbjct: 447 TGLSYTMQPGEGAFYGPKIEY---TLKDSLGRVWQCGTIQLDFNLPKRLG--------AE 495

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G+M     ++   + G   +W   +    +++         
Sbjct: 496 YIDEDNSRKNPVMLHRAIVGSMERFIGILIEHYAGSLPLWLAPIQVVLLNI------SDA 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            ++  + +     + G     D   E+I  +     +   P  V++G + + + +V ++ 
Sbjct: 550 QKEYAKTLETIFKEKGIRCESDLRNEKITYKIREHSMQRIPYMVVLGDREMQEKQVTVRT 609

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           +       M+++  I + +      
Sbjct: 610 QSGEDLGAMAIDAFIQHLNSDIEKK 634


>gi|225076640|ref|ZP_03719839.1| hypothetical protein NEIFLAOT_01690 [Neisseria flavescens
           NRL30031/H210]
 gi|224952046|gb|EEG33255.1| hypothetical protein NEIFLAOT_01690 [Neisseria flavescens
           NRL30031/H210]
          Length = 643

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 161/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 237 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNVAG 294

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 295 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 354 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVDEARAFN-ELLVRI 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S E    A+ G      +       +P E         
Sbjct: 413 YKQFGFHDVAVKLSLRPEQRAGSDEVWDKAEQGLRDALTACGVEWEELPGE--------- 463

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    ++A +  
Sbjct: 464 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LNAEYVT 504

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 505 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 558

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 559 YCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 617

Query: 424 GIREDMSLEEVINYASHRFSN 444
                +++++ I       ++
Sbjct: 618 EDLGSLNVDDFIAQLQQEITD 638


>gi|238018994|ref|ZP_04599420.1| hypothetical protein VEIDISOL_00856 [Veillonella dispar ATCC 17748]
 gi|237864478|gb|EEP65768.1| hypothetical protein VEIDISOL_00856 [Veillonella dispar ATCC 17748]
          Length = 636

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 144/441 (32%), Gaps = 40/441 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I +   G   +LP G    + +    RE  +   
Sbjct: 233 YLHLLEEAAKRDHRKLGKELGLFV--IKEEGPGFPFFLPKGMALRNELENFWREVHHEFD 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +  Y + M      +D+     P +      ++++ + SY
Sbjct: 291 YEEIRTPIILNKQLWETSGHWFHYRENMYT-TIIDDEEYAIKPMNCPGGILVYQNEMHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+ P  + ++ L  R EL     G+ R R F   DA+ F L  +        + +     
Sbjct: 350 RDFPLRYAELGLVHRHELSGALHGLFRVRAFTQDDAHVFMLPDQMQSELMKVIELF---- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                            I      ++ V   T            +    +     +    
Sbjct: 406 ---------------DRIYSQFGLKYHVELSTKPDNAMGDDAIWEAATEALRNAIEAKGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D H E   DSL    +     +++                 + G
Sbjct: 451 PYVINPGDGAFYGPKLDYHIE---DSLGRTWQCGTIQLDMNLP--------ERFQIEYVG 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   M              I    +     +P  +AP ++ ++ I    +   + 
Sbjct: 500 EDGQKHRPIMIHRACFGSMERFIGIL--TEHYAGAFPTWMAPVQVKILPI---SEKHVEY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  ++ +    V  DD  E+IG +   A +   P  ++VG K V +  V ++     
Sbjct: 555 AKELAKQMHRDYVRVEVDDRSEKIGYKIRQAQMAKVPYMLVVGDKEVEEGTVNVRKHGGD 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
               +  +E  N         
Sbjct: 615 ELGSIPFDEFFNSIKIEIKER 635


>gi|326562407|gb|EGE12726.1| threonyl-tRNA synthetase [Moraxella catarrhalis 7169]
 gi|326569116|gb|EGE19178.1| threonyl-tRNA synthetase [Moraxella catarrhalis BC1]
          Length = 639

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 150/447 (33%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L    + + + G+  W P G      +   +R+ 
Sbjct: 226 KQLKAYLQRLEEAEKRDHRKIGKALNLF--HMQEQAPGMVFWHPNGWTIWQVLEQYMRKV 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q   G +E+  P +    LW +SG +D+Y  EM+       +     P +      +F  
Sbjct: 284 QKDNGYLEIKTPQIVDRSLWEKSGHWDNY-GEMMFTTASEKRDYAIKPMNCPCHVQVFNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +  + +      
Sbjct: 343 GLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTNAQIRQEA-LNFIK 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L ++   G   I M+  + P     + E                   D    +     
Sbjct: 402 LTLDVYKDFGFDHIQMKLSTRPEKRVGADE-----------------LWDLAEQALADAL 444

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D+      +     A Y    +     L D +    +     ++    F    +    + 
Sbjct: 445 DNAGLDWELQAGEGAFYGPKIEF---SLQDCIGRVWQCGTLQLD----FNLPER----LD 493

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A F G  G+      +    +G+      ++   + G    W        +++       
Sbjct: 494 AEFVGESGERERPVMLHRAILGSFERFIGILIEHYAGLFPAWLAPQQVVVMNIT------ 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D+   + ++L+  G     D   E+IG +     L   P  +I+G K V    V +
Sbjct: 548 DKQADSVGDVVSKLNAKGYRAISDLRNEKIGFKIRERTLERIPFMLILGDKEVESGTVNV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       MSL++ I          
Sbjct: 608 RTRAGENLGSMSLDDFIAVLDKAIEKK 634


>gi|288576250|ref|ZP_05978464.2| threonine--tRNA ligase [Neisseria mucosa ATCC 25996]
 gi|288565905|gb|EFC87465.1| threonine--tRNA ligase [Neisseria mucosa ATCC 25996]
          Length = 643

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 237 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 294

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 295 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 354 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G      +       +P E         
Sbjct: 413 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLRDALTACGVEWDELPGE--------- 463

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 464 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 504

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 505 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 558

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 559 YCCEVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 617

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 618 EDLGSLDLDDFIARLQQEIAD 638


>gi|300311294|ref|YP_003775386.1| threonyl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
 gi|300074079|gb|ADJ63478.1| threonyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1]
          Length = 635

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 148/443 (33%), Gaps = 39/443 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD       L L        + G+  W P G      V   +R     
Sbjct: 229 EAYLHMLEEAEKRDHRKLGRALDLF--HFQDEAPGLIFWHPKGWTIWQQVEQYMRRVYQD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +++Y + M    +  ++A    P +      IF S + 
Sbjct: 287 NGYQEVKAPQILDRSLWEKTGHWENYRENMFT-TESENRAYALKPMNCPGHIQIFNSGLH 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F   D + F  T +  +           
Sbjct: 346 SYRDLPLRYGEFGQCHRNEPSGALHGMMRVRGFTQDDGHIFC-TEDQIQEEVAAFNRVVR 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G K + ++    P     + E                   D    +        
Sbjct: 405 EVYDCFGFKEVAVKLALRPEKRIGAEE-----------------VWDKAENALREAIRAS 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
            S    +    A Y    + H   L DS+  + +     ++       G +Y        
Sbjct: 448 GSEWEELPGEGAFYGPKIEYH---LKDSIGRSWQCGTMQVDFSMPARLGAEY-------V 497

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              + +   V +    +G++    A++  +H G   +W         + + I        
Sbjct: 498 TEDNNRKVPVMLHRAIVGSLERFIAILIENHAGAMPLW------LAPTQVVILNISDAQA 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  + +   L K G  V  D   E+I  +     +   P  ++VG K    + V ++ R 
Sbjct: 552 DYVQNVAQTLKKQGFRVETDLRNEKITYKIRQHSIQKPPYILVVGDKERDANTVAVRARG 611

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 MS++ ++       +  
Sbjct: 612 NVDLGVMSIDTLVERLKDEVAAK 634


>gi|295111615|emb|CBL28365.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Synergistetes
           bacterium SGP1]
          Length = 633

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 157/441 (35%), Gaps = 39/441 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  ++E   RD      +L L +  +H+   G   + P G   ++ +    R E  R
Sbjct: 227 KAYLKRMEEAKLRDHRKLGRELDLFS--LHEEGPGFPFFHPKGMVVMNTLIDFWRREHVR 284

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +   +LW+ SG +D Y + M    + ++K     P +      I+++ + 
Sbjct: 285 RGYQEVRTPQILDRELWLRSGHWDHYRENM-YFTEIDEKPFAIKPMNCPGGILIYKTQLH 343

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E      G+MR R F   DA+ +   P   +     +     
Sbjct: 344 SYRELPMRIGELGVVHRHERSGVLHGLMRVRCFTQDDAHLYCE-PSQIQQEVMGIMDLCR 402

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++  +      +   + P     S E                   +          +  
Sbjct: 403 YVYSDVFGFKYAVELSTKPENAMGSTE-----------------QWEAAENGLRAALEQS 445

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
            +   + E   A Y    D H E   D +    +     ++    F    ++ +   A  
Sbjct: 446 NTPYRVNEGDGAFYGPKIDFHLE---DCIGRTWQCGTIQLD----FQMPERFDMHYIAE- 497

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +   V +    +G++     ++   + G    W   +AP +  LI I    +  R
Sbjct: 498 --DGKEHRPVMLHRTILGSLERFMGILIEHYAGAFPYW---IAPVQAELIPI---SEAHR 549

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E++   L   G     D   E++G +   A L   P  +++G K   + +V ++ R 
Sbjct: 550 AYAEELRKELMSWGVRTETDSRDEKLGKRIRDAQLQKVPYMIVIGDKERDERQVAVRERT 609

Query: 423 TGIREDMSLEEVINYASHRFS 443
            G    MSLE      S  F+
Sbjct: 610 KGDLGSMSLEAFQKLLSAEFN 630


>gi|269139162|ref|YP_003295863.1| threonyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|267984823|gb|ACY84652.1| threonyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|304559086|gb|ADM41750.1| Threonyl-tRNA synthetase [Edwardsiella tarda FL6-60]
          Length = 642

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      + A +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D           +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------IWDRAEEDLAAALQENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    + S    A++ G
Sbjct: 451 PFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 ENNERVVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQAVVMNIT------DSQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++  +L   G     D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVEELSKKLQAAGIRAKSDLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                +S+++VI        + 
Sbjct: 614 KDLGVISIDDVIEKLQQEIRSR 635


>gi|288574759|ref|ZP_06393116.1| threonyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570500|gb|EFC92057.1| threonyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 630

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 82/440 (18%), Positives = 159/440 (36%), Gaps = 40/440 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +  +H+   G   + P G   ++ +     +   + G
Sbjct: 227 YVTRMEEAKKRDHRKIGRELGLFS--LHKEGPGFPFFHPKGMVVINTLIDFWSKVHRKNG 284

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             ++  P + + DLW++SG +D Y + M    + +D+     P +      +++S + SY
Sbjct: 285 YDQIRTPMILNRDLWIQSGHWDHYRENM-YFTEIDDQPYAIKPMNCPGGILVYKSDLHSY 343

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ +  R E      G+MR R F   DA+ +  TP+  K   + +      I
Sbjct: 344 RDLPLRLGELGIVHRHEKSGVLHGLMRVRCFTQDDAHHYC-TPDQIKDEVSLIMDMVDYI 402

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +  +      +   + P     S E                   +    S     ++  +
Sbjct: 403 YSEVFGFKFHVELSTRPDNSMGSDE-----------------MWELAEKSLREVLEERGT 445

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    D H E              R  + G I     +       T+ G
Sbjct: 446 TYVLNPGDGAFYGPKIDFHLED----------CIGRTWQCGTI-QLDFQMPEKFDVTYIG 494

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           +DGK+H    +    +G++     ++   + G    W           + + A      D
Sbjct: 495 SDGKEHRPAMLHRTILGSIERFLGILIEHYAGAFPFW------IAPVQVKVLAVGDDHVD 548

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + + A L      V  D   E++G +   A +   P  ++VG K +    V ++ R  
Sbjct: 549 YAKDLKALLQDREYRVELDCRDEKLGRKIRDAQMEKVPFMLVVGDKELETGTVSVRDRSE 608

Query: 424 GIREDMSLEEVINYASHRFS 443
           G +  MS E+++     +FS
Sbjct: 609 GDKGSMSKEDLLELLKGQFS 628


>gi|237801015|ref|ZP_04589476.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023872|gb|EGI03929.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 640

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 149/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YILRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M    +  ++     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TESENRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES-AAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E                   D    +  +  D    
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDE-----------------LWDRAESALASALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++    F    +    ++A +  
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLD----FNLPIR----LNAEYVS 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKNPVMLHRAILGSFERFIGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +   + +   S  
Sbjct: 613 ADLGSMPVAQFAEFLAQAVSRR 634


>gi|121535635|ref|ZP_01667441.1| threonyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
 gi|121305805|gb|EAX46741.1| threonyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
          Length = 513

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 83/440 (18%), Positives = 151/440 (34%), Gaps = 42/440 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  I     G   + P G    + +    R+   + G
Sbjct: 108 YLRMLEEAAKRDHRKLGRELDLFS--IQDEGPGFPFFHPKGMVIRNELENFWRKLHVKYG 165

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D Y + M      + +     P +      ++R+   SY
Sbjct: 166 YQEIKTPIILHQRLWQQSGHWDHYRENM-YFTTIDGEGYAVKPMNCPGGILVYRTQHHSY 224

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+MR R F   DA+ F L P   K     +   +  +
Sbjct: 225 RDLPLRTCELGLVHRHELSGALHGLMRVRSFTQDDAHIFML-PSQIKDEIQGVIDLFNEV 283

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL                         T   +   S +  +    +     ++   
Sbjct: 284 YSTFGLTY------------------HAELSTKPEKAMGSDEIWEVATNALREALEERGM 325

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H   L DS+    +     +++     F          T+ G
Sbjct: 326 PYKINEGDGAFYGPKIDFH---LRDSIGRTWQCGTIQLDMLMPEKFD--------LTYVG 374

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++   + G    W   +AP ++ ++ I         
Sbjct: 375 EDGQKHRPVMIHRVAYGSLERFIGILIEHYAGAFPTW---LAPVQVKILPITDRH---VA 428

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++   +      V  D   E+IG +     L   P  +IVG K      V ++ R  
Sbjct: 429 YAQEVATLMRSKDIRVEVDSRNEKIGYKIREGQLEKVPYMLIVGDKETETRTVAVRKRGQ 488

Query: 424 GIREDMSLEEVINYASHRFS 443
           G     ++++ +        
Sbjct: 489 GDIGAQAVDDFVAAILAEIQ 508


>gi|254804601|ref|YP_003082822.1| Threonyl-tRNA synthetase [Neisseria meningitidis alpha14]
 gi|254668143|emb|CBA04768.1| Threonyl-tRNA synthetase [Neisseria meningitidis alpha14]
          Length = 637

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 158/441 (35%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S E    A+ G      +       +P E         
Sbjct: 407 YKQFGFHDVAVKLSLRPEQRAGSDEVWDKAEQGLRDALTACGVEWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 458 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQLVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|167746735|ref|ZP_02418862.1| hypothetical protein ANACAC_01447 [Anaerostipes caccae DSM 14662]
 gi|167653695|gb|EDR97824.1| hypothetical protein ANACAC_01447 [Anaerostipes caccae DSM 14662]
          Length = 644

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 93/442 (21%), Positives = 160/442 (36%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M+     G   +LP G    + +    RE  N+ G
Sbjct: 230 YLTMMEEAKKRDHRKLGKELGLF--MMRDEGPGFPFFLPNGMVLKNTLLDYWREIHNKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + S  LW  SG +D Y + M      +++     P +      +++S  +SY
Sbjct: 288 YVEISSPIMLSRHLWETSGHWDHYQENMYT-TVIDEEDFAIKPMNCPGGVLVYQSEPRSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E   +  G+MR R F   DA+ F +  +        +     ++
Sbjct: 347 RDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMMPEQIKDE-IKGVAALIDQV 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K   +   + P     S E                   +    S  +  DD+  
Sbjct: 406 YSLFGFKYH-VELSTRPEDSMGSDE-----------------DWEMATDSLRSALDDLGL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H E   DS+    +     ++    F    ++ L     + G
Sbjct: 448 DYVVNEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQLPLRFDLH----YTG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++     G    W   +AP ++ +I I        D
Sbjct: 497 ADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVKVIPISDKH---LD 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L   G     D   E++G +   A L   P  ++VG K   +  V ++ R  
Sbjct: 551 YGTKVLDALKAAGIRAEIDTRAEKMGYKIREAQLHKIPYMLVVGGKEEENQAVSVRSRFK 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    MSL++ I          
Sbjct: 611 GDEGQMSLDDFICAIRKEIETK 632


>gi|330943371|gb|EGH45740.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 640

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 147/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YVLRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M    +   +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TESESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES-AAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E                   D    +  +  D    
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDE-----------------LWDRAESALASALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++    F    + S    A +  
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLD----FNLPIRLS----AEYVS 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKNPVMLHRAILGSFERFIGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +   + +   S  
Sbjct: 613 ADLGSMPVAQFAEFLAQAVSRR 634


>gi|153855829|ref|ZP_01996815.1| hypothetical protein DORLON_02836 [Dorea longicatena DSM 13814]
 gi|149751870|gb|EDM61801.1| hypothetical protein DORLON_02836 [Dorea longicatena DSM 13814]
          Length = 645

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 163/442 (36%), Gaps = 42/442 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E  R D      +L L   M+ +   G   +LP G    + +    RE   + G
Sbjct: 233 YLTMLEEAKRRDHRKLGKELGLF--MMCEEGPGFPFFLPKGMVLKNTLLDYWRELHKKAG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + S  LW  SG +D Y + M      + +     P +      ++++  +SY
Sbjct: 291 YVEVSTPIILSRHLWETSGHWDHYKENMYT-TQIDGEDFAIKPMNCPGGMLVYKAEPRSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    ++ L  R E   +  G+MR R F   DA+ F +  +        +      +
Sbjct: 350 KDLPLRVGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMMPEQIRDE-IKGVVALIDEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K   +   + P     S E                   +          +D+  
Sbjct: 409 YQLFGFKY-HVELSTRPEDSMGSDE-----------------DWELATEGLRGALNDLGL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+    +     +++        ++       + G
Sbjct: 451 DYVVNEGDGAFYGPKIDFH---LTDSIGRTWQCGTIQLDM----QLPQRF----ELEYTG 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++     G    W   +AP ++ ++ I        +
Sbjct: 500 ADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPISDKH---LE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L+  G     D   E+IG +   A +   P  ++VG+K   ++ V ++ R  
Sbjct: 554 YGQKVLDTLNAAGIRAEIDTRAEKIGYKIREAQMQKIPYMLVVGAKEEEENLVSVRSRFA 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G     SL+E +   +   +  
Sbjct: 614 GDEGQKSLDEFVASVTEEIATR 635


>gi|226311191|ref|YP_002771085.1| threonyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|226094139|dbj|BAH42581.1| threonyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 637

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 157/444 (35%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L   M  + + G+  +LP G    + +    R  Q   
Sbjct: 233 EYLHFIEEAKKRDHRKLGKELGLF--MFSEEAPGMPFYLPKGFTVRNELEQFSRRLQQLA 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P L +  LW ESG +D Y + M   ++ ++      P +      I+++ + S
Sbjct: 291 QYTEVRSPFLMNERLWKESGHWDHYKENM-YFSEVDNATYALKPMNCPGHMLIYKNEMHS 349

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + +     R E      G++R R F   DA+ F    + +      + +    
Sbjct: 350 YRDLPIRYSEFGQVHRHEYSGALNGMLRVRTFCQDDAHVFVRPDQIASEIKGMITLI--- 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                             I      E+ V   T       S +  +    S  T  +++ 
Sbjct: 407 ----------------DSIYKVFGFEYSVALSTRPEDSMGSDELWEAAESSLKTVLEELG 450

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I +   A Y    D    ++ D+L    +     ++    F    K+      T+ 
Sbjct: 451 MAYEIKDGDGAFYGPKIDF---QITDALKRRHQCGTIQLD----FQMPEKFD----LTYV 499

Query: 304 GADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G D + H   +      G+M     ++   + G   IW             I    +V  
Sbjct: 500 GQDNEKHRPVVLHRAMYGSMERFIGILIEHYAGAFPIW------LTPIQARIMNISEVHM 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E++  +L + G  V  D   E+IG +   A +   P  +++G K V+D  + ++ R 
Sbjct: 554 PYAEQVREKLQQAGIRVELDGRNEKIGYKIREAQVEKIPYMLVIGEKEVADGTLSVRKRG 613

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
            G    M+++  +       +  +
Sbjct: 614 VGDEGAMTVDAFVEKIRAEINEMK 637


>gi|254515029|ref|ZP_05127090.1| threonyl-tRNA synthetase [gamma proteobacterium NOR5-3]
 gi|219677272|gb|EED33637.1| threonyl-tRNA synthetase [gamma proteobacterium NOR5-3]
          Length = 645

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 138/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      KL L      + + G+  W P G      +   +RE+Q 
Sbjct: 228 LKQYLRRIEEAEKRDHRKIGKKLDLF--HTQEEAPGMVFWHPQGWTIYQVIEQYMREQQR 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P L    LW +SG  D +G +M  L   +++     P +      +F   +
Sbjct: 286 AQDYQEIKTPQLVDMSLWEKSGHADKFGDDMFMLT-ADEREFAVKPMNCPCHVQVFNQGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    +     R+E      G+MR R F   D + F    +      +      
Sbjct: 345 RSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDGHIFCTEEQIQPE-VSTFIDFL 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G   +  R  + P     + E                   D    +     D 
Sbjct: 404 HAVYADFGFDEVIYRLSTRPAQRVGTDE-----------------DWDRAEKALADALDA 446

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                  +    A Y    +     L D +    ++    ++                A 
Sbjct: 447 QGLDWQELPGEGAFYGPKIEF---SLKDCIGRVWQMGTIQVDFSMPGRLD--------AQ 495

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DG       +    +G+      ++  + +G   +W        I++       + 
Sbjct: 496 YVAEDGSRKTPVMLHRAILGSFERFIGILIENFEGSFPVWLAPKQAVVINIT------EK 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +    +   L   G  VF D   E+IG +     +   P  V+VG K V    V ++ 
Sbjct: 550 QDEYVRFVEDSLKNKGFRVFSDLRNEKIGFKIREHTIQRVPYLVVVGEKEVEAKTVAVRS 609

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       MSLE          +  
Sbjct: 610 RNGEDLGTMSLEAFTEILDQDVARR 634


>gi|218709221|ref|YP_002416842.1| threonyl-tRNA synthetase [Vibrio splendidus LGP32]
 gi|218322240|emb|CAV18357.1| Threonyl-tRNA synthetase [Vibrio splendidus LGP32]
          Length = 655

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            + + +   RD       L L    + Q + G+  W   G      +   IR++      
Sbjct: 247 LVRLEEAAKRDHRKIGKHLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFIRQKLTEYDY 304

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y + M       ++     P +      IF   +KSYR
Sbjct: 305 QEVKGPLMMDRVLWERSGHWDKYAEAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 363

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 364 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHVFC-TEDQVQQEVKACIEMVYDTY 422

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E                   D          + +   
Sbjct: 423 TTFGFENIVVKLSTRPEQRVGSDE-----------------MWDRAEADLKQALEAMEIA 465

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L D L    +     ++       G        AT+ G 
Sbjct: 466 YEIQEGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFALPERLG--------ATYVGE 514

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D + H    +    +G++     ++   + G    W        + +           + 
Sbjct: 515 DNERHTPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAIVMGIT------DKQSEY 568

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++I  +L K G  V  D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 569 VQEIAKKLQKSGFRVKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAVRTRKGK 628

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 +++ I+Y     S+ +
Sbjct: 629 DLGKFKVDDFISYIQAEVSSRK 650


>gi|78486008|ref|YP_391933.1| threonyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
 gi|123769059|sp|Q31F14|SYT_THICR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78364294|gb|ABB42259.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Thiomicrospira
           crunogena XCL-2]
          Length = 642

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 82/440 (18%), Positives = 156/440 (35%), Gaps = 39/440 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +++E   RD       L L    + + + G+  W P G      V   +R++     
Sbjct: 231 YLRMMEEAEKRDHRKLGKSLDLF--HVDELAPGMAFWHPKGSTLYRVVENYMRQQLVEND 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D +   M    +  ++     P +      ++  ++ SY
Sbjct: 289 YQEIRTPLIMDRTLWEKSGHWDKFKDNMFT-TETENRDYAVKPMNCPGHIQVYNHNLSSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R F   DA+ F  TPE  K             
Sbjct: 348 RDLPIRLAEFGLVHRNEPSGTLHGLMRVRSFTQDDAHIFC-TPEQIKEEVQACIDLVFNT 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +I ++  + P                        D  D    +      D   
Sbjct: 407 YADFGFDNIQVKFSTRPEQR-----------------VGEDDVWDLAEEALEQTLKDANL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             ++     A Y    +    +L D +    +     ++      F       ++A + G
Sbjct: 450 EYALQPGEGAFYGPKIEF---QLKDCIGRVWQCGTIQLD------FSMTQEERLNAVYIG 500

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           AD + H+   +    +G++     ++   ++GK   W         + + I +   V  +
Sbjct: 501 ADNEKHHPVMIHRAILGSLERFVGILVEHYEGKFPTW------LAPTQLVIASIADVHNE 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
                  +L K G  V  D   E++G +     L   P  ++VG + + +  V ++ R  
Sbjct: 555 YVNDFAKKLKKHGFRVESDLRNEKVGFKIREHTLQRVPYILVVGDQEMENGTVNVRARGG 614

Query: 424 GIREDMSLEEVINYASHRFS 443
                 S EE+I++ S   S
Sbjct: 615 ENLGSFSFEELIDHLSEDVS 634


>gi|260774298|ref|ZP_05883213.1| threonyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
 gi|260611259|gb|EEX36463.1| threonyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
          Length = 642

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR +      
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFIRHKLTEYDY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEDQIQQEVTSCIKMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           +  G ++I ++  + P     S E                   D    +     D +   
Sbjct: 410 NTFGFENIAVKLSTRPEKRVGSDE-----------------IWDKSEEALKHSLDAMGIA 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L+D L    +     ++       G        AT+ G 
Sbjct: 453 YEIQEGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPSRLG--------ATYVGE 501

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +    +G++     ++   + G    W        +++           D 
Sbjct: 502 SNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVVVNIT------DKQADY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 556 AQEVVQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 L++ I +     S+ +
Sbjct: 616 DLGKFKLDDFITHIQAEVSSRQ 637


>gi|294792093|ref|ZP_06757241.1| threonine--tRNA ligase [Veillonella sp. 6_1_27]
 gi|294457323|gb|EFG25685.1| threonine--tRNA ligase [Veillonella sp. 6_1_27]
          Length = 641

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 145/441 (32%), Gaps = 40/441 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I +   G   +LP G    + +    RE  +   
Sbjct: 238 YLHLLEEAAKRDHRKLGKELGLFV--IKEEGPGFPFFLPKGMALRNELENFWREVHHDFD 295

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S  LW  SG +D Y + M      +D+     P +      ++++ + SY
Sbjct: 296 YEEIRTPIILSKHLWETSGHWDHYRENMYT-TIIDDEEYAIKPMNCPGGILVYQNEMHSY 354

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+ P  + ++ L  R EL     G+ R R F   DA+ F L  +        + +     
Sbjct: 355 RDFPLRYAELGLVHRHELSGALHGLFRVRAFTQDDAHVFMLPDQMQTELMKVIELF---- 410

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                            I      ++ V   T            +    +     +    
Sbjct: 411 ---------------DRIYSQFGLKYHVELSTKPDNAMGDDAIWEAATEALRNAIEAKGI 455

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D H E   DSL    +     +++                 + G
Sbjct: 456 PYVINPGDGAFYGPKLDYHIE---DSLGRTWQCGTIQLDMNLP--------ERFQIEYIG 504

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   M              I    +     +P  +AP ++ ++ I    +   + 
Sbjct: 505 EDGQKHRPIMIHRACFGSMERFIGIL--TEHYAGAFPTWMAPVQVKILPI---SEKHVEY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  ++ +    V  DD  E+IG +   A +   P  ++VG K V +  V ++     
Sbjct: 560 AKELAKQMHRDYVRVEVDDRSEKIGYKIRQAQMAKVPYMLVVGDKEVEEGTVNVRKHGGD 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
               +  EE  N         
Sbjct: 620 ELGSVPFEEFFNSIKIEIKER 640


>gi|149374489|ref|ZP_01892263.1| threonyl-tRNA synthetase [Marinobacter algicola DG893]
 gi|149361192|gb|EDM49642.1| threonyl-tRNA synthetase [Marinobacter algicola DG893]
          Length = 641

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 158/444 (35%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      KL L    + + + G+  W P G      +   +R +Q++
Sbjct: 229 KAYLHRLEEAEKRDHRKIGKKLSLF--HMQEEAPGMVFWHPDGWSLYQEIEQYMRGKQHK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + S  LW +SG +D +  +M    +         P +      +F   +K
Sbjct: 287 HGYQEIKTPQVVSRALWEKSGHWDKFKDDMFT-TESEKHDYAIKPMNCPCHVQVFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    +     R+E      G+MR R F   DA+ F       +   +       
Sbjct: 346 SYKDLPLRLAEFGSCHRNEASGALHGLMRVRGFTQDDAHIFCEEDAIQQE-VSDFIGMLH 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G   I  +  + P     S E    ++    +    +      +P E       
Sbjct: 405 EIYADFGFTEILYKLSTRPEKRVGSDEVWDKSEAALEEALNREGVDWELLPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    +     L D +    +     ++       G +Y        
Sbjct: 458 ----------GAFYGPKIEF---SLKDCIGRVWQCGTIQVDFSMPGRLGAQY-------V 497

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +   V +    +G+      ++   ++G    W   +AP +I+++NI  +    R
Sbjct: 498 ADNSERKTPVMLHRAVLGSFERFIGILIEEYEGAFPTW---LAPTQIAVLNITDN---QR 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D C+ +  +   +G  V  D   E+IG +     +   P  V++G K V ++ V ++ R 
Sbjct: 552 DYCQNLAKKWDSLGYRVNADLRNEKIGFKIREHTINKVPFLVVIGDKEVENNAVAVRTRK 611

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                 +SLE      +    N +
Sbjct: 612 GEDLGTLSLEAFEQLMADEI-NRK 634


>gi|325197939|gb|ADY93395.1| threonyl-tRNA synthetase [Neisseria meningitidis G2136]
          Length = 637

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 160/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E         
Sbjct: 407 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 458 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQLVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|308067332|ref|YP_003868937.1| Threonyl-tRNA synthetase 2 (threonine--tRNA ligase) (ThrRS)
           [Paenibacillus polymyxa E681]
 gi|305856611|gb|ADM68399.1| Threonyl-tRNA synthetase 2 (Threonine--tRNA ligase) (ThrRS)
           [Paenibacillus polymyxa E681]
          Length = 637

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 153/442 (34%), Gaps = 42/442 (9%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   M  + + G+  +LP G      +    R+ Q   G 
Sbjct: 235 LHLLEEAKKRDHRKLGKELELF--MFSEEAPGMPFYLPKGMVVRTALEDYSRDIQRLHGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG Y+ Y + M   ++ ++      P +      +F++ + SYR
Sbjct: 293 EEVRTPLMMNNRLWEQSGHYEHYKENM-YFSEVDETTFALKPMNCPGHMLVFKNELHSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R EL     G+MR R F   DA+ F  TP   +     +      ++
Sbjct: 352 DLPIRIAEFGQVHRHELSGALNGMMRVRTFCQDDAHIFV-TPGQIEQEITDVIKLINEMY 410

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G                   +F V   T            D    +     D +   
Sbjct: 411 SVFG------------------FDFTVELSTRPDDFMGEPALWDQAEQALQNVLDHLGIN 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I     A Y    D H   + D+L  + +     ++    F    K+      T+ G 
Sbjct: 453 YRINAGDGAFYGPKIDFH---ILDALKRSWQCGTIQLD----FQMPEKFD----LTYVGE 501

Query: 306 DGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D + H    +     G++     ++     G   +W   V    + +       +   + 
Sbjct: 502 DNQKHRPVVIHRAIYGSIDRFMGILTEHFTGAFPLWLAPVHAKLLPV------SENYIET 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +I   L K G  V  D   E++G +   A L   P   ++G    +   V ++ R  G
Sbjct: 556 ANEIQDALLKAGLRVEVDTRNEKLGYKIREAQLEKVPYMFVIGENEKTTGTVAVRKRGEG 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               +S+ +++   S      +
Sbjct: 616 DLGSLSIADIVEKISTEIREKQ 637


>gi|86147528|ref|ZP_01065839.1| threonyl-tRNA synthetase [Vibrio sp. MED222]
 gi|85834696|gb|EAQ52843.1| threonyl-tRNA synthetase [Vibrio sp. MED222]
          Length = 642

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            + + +   RD       L L    + Q + G+  W   G      +   IR++      
Sbjct: 234 LVRLEEAAKRDHRKIGKHLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFIRQKLTEYDY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y + M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYAEAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHVFC-TEDQVQQEVKACIEMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P     S E                   D          + +   
Sbjct: 410 TTFGFENIVVKLSTRPEQRVGSDE-----------------MWDRAEADLKQALEAMEIA 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    +     L D L    +     ++       G        AT+ G 
Sbjct: 453 YEIQEGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFALPERLG--------ATYVGE 501

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D + H    +    +G++     ++   + G    W        + +           + 
Sbjct: 502 DNERHTPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAIVMGIT------DKQSEY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++I  +L K G  V  D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 556 VQEIAKKLQKSGFRVKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAVRTRKGK 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 +++ I+Y     S+ +
Sbjct: 616 DLGKFKVDDFISYIQAEVSSRK 637


>gi|313892956|ref|ZP_07826533.1| threonine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442309|gb|EFR60724.1| threonine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 636

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 144/441 (32%), Gaps = 40/441 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I +   G   +LP G    + +    RE  +   
Sbjct: 233 YLHLLEEAAKRDHRKLGKELGLFV--IKEEGPGFPFFLPKGMALRNELENFWREVHHEFD 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +  Y + M      +D+     P +      ++++ + SY
Sbjct: 291 YEEIRTPIILNKQLWETSGHWFHYRENMYT-TIIDDEEYAIKPMNCPGGILVYQNEMHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+ P  + ++ L  R EL     G+ R R F   DA+ F L  +        + +     
Sbjct: 350 RDFPLRYAELGLVHRHELSGALHGLFRVRAFTQDDAHVFMLPDQMQSELMKVIELF---- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                            I      ++ V   T            +    +     +    
Sbjct: 406 ---------------DRIYSQFGLKYHVELSTKPDNAMGDDAIWEAATEALRNAIEAKGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D H E   DSL    +     +++                 + G
Sbjct: 451 PYVINPGDGAFYGPKLDYHIE---DSLGRTWQCGTIQLDMNLP--------ERFQIDYVG 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   M              I    +     +P  +AP ++ ++ I    +   + 
Sbjct: 500 EDGQKHRPIMIHRACFGSMERFIGIL--TEHYAGAFPTWMAPVQVKILPI---SEKHVEY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  ++ +    V  DD  E+IG +   A +   P  ++VG K V +  V ++     
Sbjct: 555 AKELAKQMHRDYVRVEVDDRSEKIGYKIRQAQMAKVPYMLVVGDKEVEEGTVNVRKHGGD 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
               +  EE  N         
Sbjct: 615 ELGSVPFEEFFNSIKIEIKER 635


>gi|326572997|gb|EGE22976.1| threonyl-tRNA synthetase [Moraxella catarrhalis CO72]
          Length = 639

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 150/447 (33%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L    + + + G+  W P G      +   +R+ 
Sbjct: 226 KQLKAYLQRLEEAEKRDHRKIGKALNLF--HMQEQAPGMVFWHPNGWTIWQVLEQYMRKV 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q   G +E+  P +    LW +SG +D+Y  EM+       +     P +      +F  
Sbjct: 284 QKDNGYLEIKTPQIVDRSLWEKSGHWDNY-GEMMFTTASEKRDYAIKPMNCPCHVQVFNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +  + +      
Sbjct: 343 GLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTNAQIRQEA-LNFIK 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L ++   G   I M+  + P     + E                   D    +     
Sbjct: 402 LTLDVYKDFGFDHIQMKLSTRPEKRVGADE-----------------LWDLAEQALADAL 444

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D+      +     A Y    +     L D +    +     ++    F    +    + 
Sbjct: 445 DNAGLDWELQAGEGAFYGPKIEF---SLQDCIGRVWQCGTLQLD----FNLPER----LD 493

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A F G  G+      +    +G+      ++   + G    W        +++       
Sbjct: 494 AEFVGESGERERPVMLHRAILGSFERFIGILIEHYAGLFPAWLAPQQVVVMNIT------ 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D+   + ++L+  G     D   E+IG +     L   P  +I+G K V    V +
Sbjct: 548 DKQADSVGDVVSKLNAKGYRAISDLRNEKIGFKIRERTLERIPFMLILGDKEVESGTVNV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       MSL++ I          
Sbjct: 608 RTRTGDNLGSMSLDDFIAVLDKAIEKK 634


>gi|169831543|ref|YP_001717525.1| threonyl-tRNA synthetase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638387|gb|ACA59893.1| threonyl-tRNA synthetase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 635

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 157/445 (35%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD      +L L +   H+   G   + P G    + +    REE  
Sbjct: 227 LKEHLFRLEEAKRRDHRRLGFELDLFS--FHEAGPGFPFFHPRGMVLRNELERFWREEHT 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G +E+  P +   +LW  SG +D Y + M      +D+     P +      ++RS +
Sbjct: 285 KNGYLEIRTPIILRQELWERSGHWDHYRENM-YFTTIDDEKYAVKPMNCPGGILVYRSKL 343

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    ++ L  R EL     G+MR+R F   DA+ F   PE  +    ++    
Sbjct: 344 HSYRELPIRLGELGLVHRHELSGVLHGLMRARCFTQDDAHIFCR-PEQVEEEIVRIMDLT 402

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              + ++      +   + P     S E                   +    +     ++
Sbjct: 403 EYFYRQVFGFDYHVELSTRPEKSLGSDE-----------------IWESATAALRRALEE 445

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 + E   A Y    D H   L D L    +     ++    F    K+       
Sbjct: 446 RAVNYKVNEGDGAFYGPKVDFH---LRDCLGRTWQCGTIQVD----FQMPEKF----ELE 494

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H    +     G+M    A++    +     +P  +AP ++ ++ I      
Sbjct: 495 YVGEDGQRHRPVMIHRVIYGSMERFIAILT---EHFAGAFPVWLAPVQVRILPITDRHA- 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++   L + G    +D   E++G +   A +L  P  +++G +      V ++H
Sbjct: 551 --AYAQEVTEALLRAGVRAEFDGRNEKVGYKIREAQVLKVPYMLVIGDREAESRTVAVRH 608

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    M L +            
Sbjct: 609 RTAGDLGSMELNDFTGRLVREIGTR 633


>gi|262275836|ref|ZP_06053645.1| threonyl-tRNA synthetase [Grimontia hollisae CIP 101886]
 gi|262219644|gb|EEY70960.1| threonyl-tRNA synthetase [Grimontia hollisae CIP 101886]
          Length = 642

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 139/441 (31%), Gaps = 40/441 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G      + A +R +      
Sbjct: 233 LQRLEEAAKRDHRKLGKQLDLY--HMQQEAPGMVFWHHNGWVVFRELEAFVRSKLAEYNY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 291 QEVKGPLIMDRVLWERSGHWDKYADYMFT-TQSENREYALKPMNCPGHVQIFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F    +  +             +
Sbjct: 350 DLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTPEQVQQE-VTSCIKMVYDTY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G + I ++  + P                      S    D    +     + +   
Sbjct: 409 KTFGFEDIVVKLSTRPEMR-----------------VGSDAMWDRAEKALAEALESMNIQ 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I+E   A Y    +     L D L    +     ++       G        AT+ G 
Sbjct: 452 FEILEGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFALPERLG--------ATYVGE 500

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D + H    +    +G++     ++   + G    W        +++           + 
Sbjct: 501 DNERHTPVMIHRAILGSLERFIGILIEEYAGHFPSWLAPQQAVVMNIT------DNQAEY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L K G     D   E+IG +     L   P  ++ G + +   ++ ++ R   
Sbjct: 555 VQEVAKKLQKAGFRASADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGK 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
                 ++E I+   +     
Sbjct: 615 DLGKYKIDEFISLLENEIRTR 635


>gi|303230749|ref|ZP_07317496.1| threonine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514509|gb|EFL56504.1| threonine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
          Length = 636

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 145/441 (32%), Gaps = 40/441 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I +   G   +LP G    + +    RE  +   
Sbjct: 233 YLHMLEEAAKRDHRKLGKELGLFV--IKEEGPGFPFFLPKGMALRNELENFWREVHHDFE 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +D Y + M      +D+     P +      ++++ + SY
Sbjct: 291 YDEIRTPIILNKHLWETSGHWDHYRENMYT-TIIDDEEYAIKPMNCPGGILVYQNEMHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + ++ L  R EL     G+ R R F   DA+ F L  +        + +     
Sbjct: 350 RDLPLRYAELGLVHRHELSGALHGLFRVRAFTQDDAHVFMLPEQMQSELMKVIELF---- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                            I      ++ V   T            +    +     +    
Sbjct: 406 ---------------DRIYSQFGLKYHVELSTKPDNAMGDDAIWEAATEALRNAIEAKGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D H E   DSL    +     +++              +  + G
Sbjct: 451 DYVINPGDGAFYGPKLDYHIE---DSLGRTWQCGTIQLDMNLP--------ERFNVEYIG 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   M              I    +     +P  +AP ++ ++ I    +     
Sbjct: 500 EDGQKHRTIMIHRACFGSMERFIGIL--TEHYAGAFPTWMAPVQVKVLPI---SEKHVKY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  ++      V  DD  E+IG +   A +   P  ++VG K + D+ V ++     
Sbjct: 555 ANQLAKQMRHDYVRVEVDDRNEKIGYKIRQAQMEKVPYMLVVGDKEMEDNSVNVRKHGGD 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
               +  +E  N         
Sbjct: 615 ELGTVPFDEFFNSIKIEIKER 635


>gi|119476522|ref|ZP_01616873.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
 gi|119450386|gb|EAW31621.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
          Length = 645

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 153/444 (34%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      K  L    + + + G+  W P G      + + +RE+Q  
Sbjct: 229 KAYLHRLEEAEKRDHRKLGKKYDLF--HMQEEAPGMVFWHPKGWSIYTTIESYMREQQTL 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P L    LW +SG  D +G +M  L + + +     P +      IF   +K
Sbjct: 287 NNYQEIKTPQLVDFSLWQKSGHADKFGDDMFTL-EADGRDFAIKPMNCPCHVQIFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T    +   +       
Sbjct: 346 SYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFVQDDAHIF-ATENQIQPEVSVFIDFLH 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   +  R  + P     + E    A+        SK      +P E       
Sbjct: 405 SVYEDFGFSDVIYRLSTRPEQRVGTDESWDKAEKALADALNSKGLPWEELPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    +     L D +    ++    ++                A +
Sbjct: 458 ----------GAFYGPKIEF---SLKDCIGRVWQLGTIQVDFSMPGRLD--------AQY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG       +    +G+      ++   ++G    W   +AP ++ + NI       
Sbjct: 497 VAEDGSRQTPVMLHRAILGSFERFIGILIEHYEGAFPTW---LAPTQVVIANITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +K++  L   G  V  D   E+IG +     +   P  ++VG K + +  V ++ R
Sbjct: 551 APYVKKVHQSLKNSGIRVDADLRNEKIGFKIREHIIQKVPYLLVVGDKEIENQTVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MSLE      +   +  
Sbjct: 611 NGEDLGSMSLEAFEQILNEDVARR 634


>gi|171058428|ref|YP_001790777.1| threonyl-tRNA synthetase [Leptothrix cholodnii SP-6]
 gi|238689097|sp|B1XYZ3|SYT_LEPCP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|170775873|gb|ACB34012.1| threonyl-tRNA synthetase [Leptothrix cholodnii SP-6]
          Length = 637

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 148/442 (33%), Gaps = 40/442 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           KY + + +   RD      +L L    I +H+ G+  W P G      V   +R      
Sbjct: 234 KYLVMLEEAEKRDHRKLGRELDLF--HIDEHAPGVVFWHPKGWTVWQQVEQYMRRVYRDN 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    LW ++G +D Y   M    +   +     P +      IF+  IKS
Sbjct: 292 GYQEVKGPQILDKGLWEKTGHWDKYRDNMFT-TESEKRDYALKPMNCPGHILIFKQGIKS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + +     R+E      G+MR R F   D + F    +              +
Sbjct: 351 YRDLPLRYGEFGQCHRNEPSGGLHGIMRVRGFTQDDGHIFCTEDQILPECDAFTT-LLQK 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   I  +  + P     S E                   D    +      +  
Sbjct: 410 VYADFGFTEILYKVATRPEKRIGSDE-----------------LWDKAEAALIASLRNSG 452

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I     A Y    +     L D+L  + +     ++    F    +    + A + 
Sbjct: 453 CEFEISPGEGAFYGPKVEY---TLKDALGRHWQCGTIQVD----FSLPER----LDAEYV 501

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              G+  H V +    +G++     ++    +      P  +AP ++S++NI        
Sbjct: 502 AESGERLHPVMLHRAILGSLERFIGILI---EEHAGALPFWLAPTQVSVLNITDG---QA 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D    +   L K G  V  D   E+I  +     L   P  ++VG K  +   V ++ R 
Sbjct: 556 DYARDVARSLQKQGLRVALDLRNEKITYKIREHSLQKVPYLIVVGDKERASGAVAVRARG 615

Query: 423 TGIREDMSLEEVINYASHRFSN 444
                 M+LE      +   + 
Sbjct: 616 NQDLGVMALEAFSQKLAAELAT 637


>gi|93353957|gb|ABF08046.1| threonyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 663

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 147/442 (33%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L    + + + G+  W P G +    V   +R    + G
Sbjct: 259 YLHMLEEAEKRDHRRLGKTLDLF--HLQEEAPGMVFWHPKGWQVWQAVEQYMRGRLGQAG 316

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG +D+Y + M  + +   +     P +      IF   ++SY
Sbjct: 317 YEEVRTPQVMDRSLWERSGHWDNYKENMF-VTESEKRDYAIKPMNCPGHVQIFNHGLRSY 375

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +  + +          I
Sbjct: 376 RDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIFCTEEQIVEEA-KAFNELAFSI 434

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K + ++    P     S      A+ G      +       +P E         
Sbjct: 435 YDDFGFKDVAVKLSLRPEKRAGSDAVWDHAEDGLRLALRACGVEWEELPGE--------- 485

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D++  + +     +++      G        A +  
Sbjct: 486 --------GAFYGPKVEYH---IKDAIGRSWQCGTLQLDLVLPERLG--------AEYVS 526

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++  +H G    W        +++       +   +
Sbjct: 527 EDNSRKRPVMLHRAILGSFERFLGILLENHAGALPAWLAPEQVVVMNIA------ESQSE 580

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E +   L K G     D   E+I  +     L   P  +++G K    ++V ++ R  
Sbjct: 581 YAENVVQLLQKQGFRAKADLRNEKITYKIREHSLQKIPYLLVIGDKERDANQVAVRARGN 640

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M +   +       S+ 
Sbjct: 641 VDLGVMPVSAFVERLQQDVSSK 662


>gi|332971649|gb|EGK10599.1| threonine--tRNA ligase [Kingella kingae ATCC 23330]
          Length = 637

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 156/440 (35%), Gaps = 41/440 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R E    G
Sbjct: 232 YITRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPRGWALWQVIEQHMRRELTEAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG + +Y   M  L     +     P +      IF   ++SY
Sbjct: 290 YQEVKTPQVMDKTFWEKSGHWANYKDNMF-LTSSEKREYAVKPMNCPGHVQIFNHGLRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    + ++ +        ++I
Sbjct: 349 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIAEETKAFNL-LVMKI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G K++ ++    P     S E    A+ G      +       +P E         
Sbjct: 408 YQQFGFKNVSIKLSLRPEKRAGSEEIWDKAEQGLRDALTACGVEWEELPGE--------- 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 459 --------GAFYGPKVEYH---IKDALGRSWQCGTIQLD----FVLPER----LEAEYVA 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G++     ++   H G   +W   V    +++       +   D
Sbjct: 500 EDNTKKRPVMLHRAILGSLERFIGILIEEHAGSFPLWLAPVQMVVMNIT------EKQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++ A+L   G  V  D   E+IG +      + +P Q+ VG K + + +V I+ +  
Sbjct: 554 YAKEVQAKLQAAGFRVDLDIRNEKIGYKIRSNSEMRYPYQLTVGDKEMENGQVSIRKKAD 613

Query: 424 GIREDMSLEEVINYASHRFS 443
                +S++E I        
Sbjct: 614 N-LGSVSVDEFIAMLQDELK 632


>gi|298369384|ref|ZP_06980702.1| threonine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283387|gb|EFI24874.1| threonine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 648

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 162/442 (36%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E +  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPRGWALWQTIEQHMRKELDAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YREVKTPQIMDKAFWEKSGHWDNYKDNMF-VTQSEKREYAVKPMNCPGHVQIFNNSLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +  +     +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVDEA-RRFNELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G      +       +P E         
Sbjct: 418 YKQFGFHDVAVKLSLRPEKRAGSDDIWDKAEQGLRDALTACGVEWEELPGE--------- 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D++  + +     ++    F    +    + A +  
Sbjct: 469 --------GAFYGPKIEYH---VKDAIGRSWQCGTLQLD----FVLPDR----LDAEYVT 509

Query: 305 A-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +G+   V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 510 ESNGRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVVMNIT------EHQTD 563

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++  RL      V  D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 564 YCRQVVERLQAENFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 622

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                +++++ I+      + +
Sbjct: 623 EDLGSLNIDDFISQLKQEIAES 644


>gi|161621305|ref|YP_583315.2| threonyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 635

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 147/442 (33%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L    + + + G+  W P G +    V   +R    + G
Sbjct: 231 YLHMLEEAEKRDHRRLGKTLDLF--HLQEEAPGMVFWHPKGWQVWQAVEQYMRGRLGQAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG +D+Y + M  + +   +     P +      IF   ++SY
Sbjct: 289 YEEVRTPQVMDRSLWERSGHWDNYKENMF-VTESEKRDYAIKPMNCPGHVQIFNHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +  + +          I
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIFCTEEQIVEEA-KAFNELAFSI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K + ++    P     S      A+ G      +       +P E         
Sbjct: 407 YDDFGFKDVAVKLSLRPEKRAGSDAVWDHAEDGLRLALRACGVEWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D++  + +     +++      G        A +  
Sbjct: 458 --------GAFYGPKVEYH---IKDAIGRSWQCGTLQLDLVLPERLG--------AEYVS 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++  +H G    W        +++       +   +
Sbjct: 499 EDNSRKRPVMLHRAILGSFERFLGILLENHAGALPAWLAPEQVVVMNIA------ESQSE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E +   L K G     D   E+I  +     L   P  +++G K    ++V ++ R  
Sbjct: 553 YAENVVQLLQKQGFRAKADLRNEKITYKIREHSLQKIPYLLVIGDKERDANQVAVRARGN 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M +   +       S+ 
Sbjct: 613 VDLGVMPVSAFVERLQQDVSSK 634


>gi|297250596|ref|ZP_06864620.2| threonine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
 gi|296838509|gb|EFH22447.1| threonine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
          Length = 648

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 162/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E         
Sbjct: 418 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    ++A +  
Sbjct: 469 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LNAEYVT 509

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   +    +++       +   D
Sbjct: 510 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPIQMVIMNIT------ENQAD 563

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 564 YCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 622

Query: 424 GIREDMSLEEVINYASHRFSN 444
                +++++ +       ++
Sbjct: 623 EDLGSLNVDDFVAQLQQEITD 643


>gi|66045402|ref|YP_235243.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. syringae B728a]
 gi|75502334|sp|Q4ZUG7|SYT_PSEU2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|63256109|gb|AAY37205.1| Threonyl-tRNA synthetase, class IIa [Pseudomonas syringae pv.
           syringae B728a]
          Length = 640

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M    +   +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TESESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES-AAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E                   D    +  +  D    
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDE-----------------LWDRAESALASALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++    F    + S    A +  
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLD----FNLPIRLS----AEYVS 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKNPVMLHRAILGSFERFIGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +   + +   S  
Sbjct: 613 ADLGSMPVAQFAEFLAQAVSRR 634


>gi|289623636|ref|ZP_06456590.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647146|ref|ZP_06478489.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|298486701|ref|ZP_07004758.1| Threonyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158784|gb|EFH99847.1| Threonyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330867695|gb|EGH02404.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 640

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 148/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M    +   +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TESESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES-AAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A+T                 +  +  D    
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAET-----------------ALASALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++    F    + S    A +  
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLD----FNLPIRLS----AEYVS 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKNPVMLHRAILGSFERFIGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +   + +   S  
Sbjct: 613 ADLGSMPVAQFAEFLAQAVSRR 634


>gi|330973951|gb|EGH74017.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 640

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M    +   +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TESESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES-AAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E                   D    +  +  D    
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDE-----------------LWDRAESALASALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++    F    + S    A +  
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLD----FNLPIRLS----AEYVS 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKNPVMLHRAILGSFERFIGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +   + +   S  
Sbjct: 613 ADLGSMPVAQFAEFLAQAVSRR 634


>gi|330989241|gb|EGH87344.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 640

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 148/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M    +   +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TESESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES-AAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A+T                 +  +  D    
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAET-----------------ALASALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++    F    + S    A +  
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLD----FNLPIRLS----AEYVS 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKNPVMLHRAILGSFERFIGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +   + +   S  
Sbjct: 613 ADLGSMPVAQFAEFLAQAVSRR 634


>gi|320324302|gb|EFW80381.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320328576|gb|EFW84578.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330885566|gb|EGH19715.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 640

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 148/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M    +   +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TESESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES-AAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A+T                 +  +  D    
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAET-----------------ALASALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++    F    + S    A +  
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLD----FNLPIRLS----AEYVS 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKNPVMLHRAILGSFERFIGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +   + +   S  
Sbjct: 613 ADLGSMPVAQFAEFLAQAVSRR 634


>gi|239998484|ref|ZP_04718408.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|240125235|ref|ZP_04738121.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|317163762|gb|ADV07303.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 648

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWRTIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 469 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 509

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 510 ENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 563

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 564 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 622

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 623 EDLGSLDLDDFIAQLQQEITD 643


>gi|254481727|ref|ZP_05094970.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
 gi|214037856|gb|EEB78520.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
          Length = 640

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 143/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      KL L      + + G+  W P G      +   +RE Q 
Sbjct: 228 LKQYLNRIEEAEKRDHRKIGKKLDLF--HTQEEAPGMVFWHPAGWSIYQTIEQYMREGQQ 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P L    LW +SG  D +G +M  L    D+     P +      +F   +
Sbjct: 286 QHDYQEIKTPQLVDLSLWKKSGHADKFGDDMFMLK-AEDREFAVKPMNCPCHVQVFNQGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F+  DA+ F    +      +      
Sbjct: 345 KSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFVQDDAHIFCTEEQIQPE-VSSFIDFL 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G   +  R  + P                      S    D    +     + 
Sbjct: 404 HSVYEDFGFADVIYRLSTRPEQR-----------------VGSDQDWDRAEKALADALNA 446

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                  +    A Y    +     L D +    ++    ++                A 
Sbjct: 447 QDLPWETLPGEGAFYGPKIEF---SLKDCIGRVWQLGTIQVDFSMPGRLD--------AQ 495

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DG     V +    +G+      ++   ++G    W   +AP +  ++NI      
Sbjct: 496 YVAEDGSRQVPVMLHRAILGSFERFIGILIEHYEGIFPTW---LAPTQAVVLNITDK--- 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  + +   L   G  V  D   E+IG +     +   P  ++VG K V    + ++ 
Sbjct: 550 QSEYAKSVEDSLKNKGFRVISDLRNEKIGFKIREHTIQKVPYLLVVGDKEVESQTLAVRA 609

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       M LE    + +   +  
Sbjct: 610 RRGEDLGSMDLEAFETHLADDVARR 634


>gi|91776355|ref|YP_546111.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylobacillus
           flagellatus KT]
 gi|123254150|sp|Q1GZR7|SYT_METFK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91710342|gb|ABE50270.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylobacillus
           flagellatus KT]
          Length = 635

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 143/442 (32%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L      +   + G+  W P G      V   +R      G
Sbjct: 231 YLHMLEEAEKRDHRKLGRQLDFF--HMQDEAPGMVFWHPRGWVIWQEVEQYMRNMFREFG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  PT+    +W +SG + +Y   M       ++     P +      IF S + SY
Sbjct: 289 YQEVRTPTIMDRVMWEKSGHWQNYHDNMFT-TASENRDYAVKPMNCPGHIQIFNSTLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  K       V   + 
Sbjct: 348 RDLPLRLAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFC-TEDQVKDEVADFIVMLYKA 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++  + P     + E                   D    +          
Sbjct: 407 YKDFGFNEVLVKLSTRPEKRVGTDE-----------------AWDKAEEALAVALRQNNL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L DSL    +     ++       G        A +  
Sbjct: 450 DFELQPGEGAFYGPKIEF---TLKDSLGRLWQCGTIQLDFNLPERLG--------AEYVD 498

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  + H V +    +G+M     ++    +      P  +AP +  ++NI        D
Sbjct: 499 EDNSRKHPVMLHRAIVGSMERFLGILI---ENYAGAMPAWLAPVQAMVLNISDG---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               + A L K G  V  D   E+I  +     L   P  +I G + +   +V ++ R  
Sbjct: 553 YVSSVVAELRKNGFRVDSDLRNEKITYKIREHSLQKLPYLLIAGEREMQTGQVAVRTRKG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M L   I       ++ 
Sbjct: 613 EDLGSMPLSAFIERLKSDVADK 634


>gi|293399557|ref|ZP_06643710.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae F62]
 gi|291610126|gb|EFF39248.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae F62]
          Length = 648

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWRTIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 469 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 509

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 510 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 563

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 564 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 622

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 623 EDLGSLDLDDFIAQLQQEITD 643


>gi|257486172|ref|ZP_05640213.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331010502|gb|EGH90558.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 640

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 148/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M    +   +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TESESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES-AAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A+T                 +  +  D    
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWDRAET-----------------ALASALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++    F    + S    A +  
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLD----FNLPIRLS----AEYVS 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKNPVMLHRAILGSFERFIGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +   + +   S  
Sbjct: 613 ADLGSMPVAQFAEFLAQAVSRR 634


>gi|240122983|ref|ZP_04735939.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
          Length = 648

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 469 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 509

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 510 ENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 563

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 564 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 622

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 623 EDLGSLDLDDFIAQLQQEITD 643


>gi|218767842|ref|YP_002342354.1| putative threonyl-tRNA synthetase [Neisseria meningitidis Z2491]
 gi|22654142|sp|Q9JVA3|SYT_NEIMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|121051850|emb|CAM08156.1| putative threonyl-tRNA synthetase [Neisseria meningitidis Z2491]
          Length = 637

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 160/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E         
Sbjct: 407 YKQFGFHDVSVKLSLRPEQRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 458 --------GAFYGPKIEYH---VRDALGRSWQCGTLQLD----FVLPER----LDAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQLVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|28869575|ref|NP_792194.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213970495|ref|ZP_03398622.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|301384174|ref|ZP_07232592.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato Max13]
 gi|302132643|ref|ZP_07258633.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|38258312|sp|Q883H9|SYT_PSESM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28852817|gb|AAO55889.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213924666|gb|EEB58234.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|330876789|gb|EGH10938.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|331016139|gb|EGH96195.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 640

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 145/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M        +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TQSESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        L +
Sbjct: 348 RELPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES-AAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E                   D    +  +  D    
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDE-----------------LWDRAESALASALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++    F    + S    A +  
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLD----FNLPIRLS----AEYVS 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKNPVMLHRAILGSFERFIGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +   + +   S  
Sbjct: 613 ADLGSMPVAQFAEFLAQAVSRR 634


>gi|330967298|gb|EGH67558.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 640

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 145/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M        +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TQSESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        L +
Sbjct: 348 RELPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES-AAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E                   D    +  +  D    
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDE-----------------LWDRAESALASALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++    F    + S    A +  
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLD----FNLPIRLS----AEYVS 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKNPVMLHRAILGSFERFIGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +   + +   S  
Sbjct: 613 ADLGSMPVAQFAEFLAQAVSRR 634


>gi|330958898|gb|EGH59158.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 640

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M    +   +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TESESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES-AAFIKLTLAV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E                   D    +  +  D    
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDE-----------------LWDRAESALASALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++    F    + S    A +  
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLD----FNLPIRLS----AEYVS 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKNPVMLHRAILGSFERFIGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +   + +   S  
Sbjct: 613 ADLGSMPVAQFAEFLAQAVSRR 634


>gi|302187613|ref|ZP_07264286.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. syringae 642]
          Length = 640

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M    +   +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TESESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES-AAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E                   D    +  +  D    
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDE-----------------LWDRAESALASALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++    F    + S    A +  
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLD----FNLPIRLS----AEYVS 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKNPVMLHRAILGSFERFIGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +   + +   S  
Sbjct: 613 ADLGSMPVAQFAEFLAQAVSRR 634


>gi|320529200|ref|ZP_08030292.1| threonyl-tRNA synthetase [Selenomonas artemidis F0399]
 gi|320138830|gb|EFW30720.1| threonyl-tRNA synthetase [Selenomonas artemidis F0399]
          Length = 639

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 159/444 (35%), Gaps = 42/444 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    RE   R G
Sbjct: 233 YLHMLEEAEKRDHRKLGRELDLFS--LHEEGPGFPFFHPNGMILRNELLNYWREVHRRYG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + S  LW  SG +  Y + M      +++     P +      ++RS + SY
Sbjct: 291 YSEISTPVILSRKLWETSGHWFHYRENMYT-TQIDEEDYAIKPMNCPGCMLVYRSQLHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+ R R F   DA+   +TPE  +         +  +
Sbjct: 350 RDLPLRLAELGLVHRHELSGALHGLFRVRNFTQDDAH-LFVTPEQIEGEIQHTIDLFDEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL        + P     S E                   +          ++   
Sbjct: 409 YRTFGLSYK-AELSTRPDDSMGSDE-----------------MWELATSGLQKALENRGL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+    +     +++     F          T+ G
Sbjct: 451 DYIVNEGDGAFYGPKIDFH---LRDSIGRTWQCGTIQLDMSLPEKFD--------LTYVG 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++    +     +P  + P ++ ++ I    +   +
Sbjct: 500 EDGEKHRPVMLHRVVYGSIERFIGILI---ENFAGAFPVWMTPVQVRILPIT---ERHAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++  R+   G  V  D+  E+ G +   + +   P  ++VG +      V ++    
Sbjct: 554 YAEELRKRMFDRGIRVEVDNRNEKTGYKIRESQVKKTPYTLVVGDQEQESGTVALRKYGE 613

Query: 424 GIREDMSLEEVINYASHRFSNNRP 447
                MS ++ I +   + +   P
Sbjct: 614 KDSTVMSADDFIAFVEKKIAERSP 637


>gi|268681605|ref|ZP_06148467.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268621889|gb|EEZ54289.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
          Length = 637

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 407 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 458 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|194098020|ref|YP_002001068.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|193933310|gb|ACF29134.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
          Length = 648

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 469 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 509

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 510 ENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 563

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 564 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 622

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 623 EDLGSLDLDDFIAQLQQEITD 643


>gi|268683833|ref|ZP_06150695.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|268624117|gb|EEZ56517.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
          Length = 637

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWRTIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 407 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 458 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|254674303|emb|CBA10087.1| Threonyl-tRNA synthetase [Neisseria meningitidis alpha275]
          Length = 637

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 160/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E         
Sbjct: 407 YKQFGFHDVSVKLSLRPEQRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 458 --------GAFYGPKIEYH---VRDALGRSWQCGTLQLD----FVLPER----LDAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  ++ G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFIGILIENYAGSFPLWLAPVQLVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|329904275|ref|ZP_08273747.1| Threonyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327548052|gb|EGF32784.1| Threonyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 635

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 145/444 (32%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD       L L      + + G+  W P G      V   +R     
Sbjct: 229 EAYLHMLEEADKRDHRKLGRLLDLF--HFQEEAPGMIFWHPKGWSVWQQVEQYMRRVYQD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG +++Y + M    +   ++    P +      IFRS ++
Sbjct: 287 NGYQEVKAPQILDISLWEKSGHWENYKENMFT-TESEKRSYALKPMNCPGHVQIFRSDMR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F   D + F    +  +           
Sbjct: 346 SYRDLPLRYGEFGQCHRNEPSGSLHGIMRVRGFTQDDGHIFCTEDQILEECVAYT-ALLH 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G  +I  +  + P     S E                   D    +  T  +  
Sbjct: 405 KVYADFGFANITYKVATRPEKRVGSEE-----------------AWDKAENALITSLERS 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I     A Y    +     L D++    +     ++       G        A +
Sbjct: 448 GCEFEISPGEGAFYGPKIEY---TLTDAIGRAWQCGTMQVDFSMPIRLG--------AEY 496

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D      V +    +G+      ++  ++ G   +W   V    +++       +  
Sbjct: 497 VAEDNSRKVPVMLHRAILGSFERFIGMLLENYSGALPMWLAPVQVVVLNI------SEGQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    +   L K G  V  D   E+I  +     +   P  ++VG K    + V ++ R
Sbjct: 551 SDYARSVTQSLKKQGFRVESDLRNEKITFKIREHSVQKVPYIIVVGDKERDAATVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M +  +I       +  
Sbjct: 611 GNADLGTMPISNLIARLLADVAEK 634


>gi|59800743|ref|YP_207455.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
 gi|73919809|sp|Q5F9U4|SYT_NEIG1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|59717638|gb|AAW89043.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
          Length = 637

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 407 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 458 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|166032032|ref|ZP_02234861.1| hypothetical protein DORFOR_01734 [Dorea formicigenerans ATCC
           27755]
 gi|166028485|gb|EDR47242.1| hypothetical protein DORFOR_01734 [Dorea formicigenerans ATCC
           27755]
          Length = 643

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 156/443 (35%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L   M+ +   G   +LP G    + +    RE   + 
Sbjct: 229 EYLTMLEEAKKRDHRKLGKELGLF--MMCEEGPGFPFFLPKGMVLKNTLLDYWRELHKKA 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E+S P + S  LW  SG +D Y + M      + +     P +      ++++  +S
Sbjct: 287 GYVEVSTPIILSRHLWETSGHWDHYKENMYT-TQIDGEDYAIKPMNCPGGMLVYKAEPRS 345

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y++LP    ++ L  R E   +  G+MR R F   DA+ F +  +        +      
Sbjct: 346 YKDLPLRVGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMMPEQIRDE-IKGVVALIDE 404

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G K   +   + P     + E                   +          +D+ 
Sbjct: 405 VYSLFGFKYH-VELSTRPENSMGTDE-----------------DWELATEGLRGALNDLG 446

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   L DS+    +     +++        ++       + 
Sbjct: 447 LDYVVNEGDGAFYGPKIDFH---LTDSIGRTWQCGTIQLDM----QLPQRF----ELEYT 495

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG+ H    +     G++     ++     G    W   +AP ++ ++ I        
Sbjct: 496 GADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPISDK---YM 549

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+   L+  G     D   E+IG +   A +   P  ++VG K      V ++ R 
Sbjct: 550 DYANKVLDELNAAGVRAEVDSRAEKIGYKIREAQMQKIPYMLVVGEKEQEADLVSVRSRF 609

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G     +LE  I       ++ 
Sbjct: 610 AGDEGQKNLETFIADIQKEIADR 632


>gi|261392911|emb|CAX50492.1| threonyl-tRNA synthetase (threonine--tRNA ligase; ThrRS) [Neisseria
           meningitidis 8013]
 gi|325203807|gb|ADY99260.1| threonyl-tRNA synthetase [Neisseria meningitidis M01-240355]
          Length = 637

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 160/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E         
Sbjct: 407 YKQFGFHDVSVKLSLRPEQRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 458 --------GAFYGPKIEYH---VRDALGRSWQCGTLQLD----FVLPER----LDAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  ++ G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFIGILIENYAGSFPLWLAPVQLVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|240013609|ref|ZP_04720522.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI18]
 gi|240112403|ref|ZP_04726893.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|240120679|ref|ZP_04733641.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID24-1]
          Length = 648

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 469 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 509

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 510 ENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 563

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 564 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 622

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 623 EDLGSLDLDDFIAQLQQEITD 643


>gi|71735831|ref|YP_274354.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|123747652|sp|Q48JS3|SYT_PSE14 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71556384|gb|AAZ35595.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 640

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 148/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M    +   +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TESESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES-AAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A+T                 +  +  D    
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDELWERAET-----------------ALASALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++    F    + S    A +  
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLD----FNLPIRLS----AEYVS 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKNPVMLHRAILGSFERFIGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +   + +   S  
Sbjct: 613 ADLGSMPVAQFAEFLAQAVSRR 634


>gi|296135845|ref|YP_003643087.1| threonyl-tRNA synthetase [Thiomonas intermedia K12]
 gi|295795967|gb|ADG30757.1| threonyl-tRNA synthetase [Thiomonas intermedia K12]
          Length = 639

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 143/442 (32%), Gaps = 41/442 (9%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L +   RD      +L L      + + G+  W P G      V   +R+    +G
Sbjct: 231 YLHALAEAEKRDHRKLGKELDLF--HFQEEAPGLAFWHPKGWALWQAVEQYMRQVYRDSG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG +D+Y + M    +   +     P +      IF S ++SY
Sbjct: 289 YQEVKGPQILDVSLWKRSGHWDNYSENMF-FTESEKRQFAVKPMNCPGHIQIFNSGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F  T +  +          +++
Sbjct: 348 RDLPIRYGEFGSCHRNEPSGALHGLLRVRGFTQDDGHIFC-TEDQIEAEVTAFHQQAMQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P                       +   D    +          
Sbjct: 407 YTDFGFTDIALKIALRPEKR-----------------IGEEAVWDKAEAALRAALQACGV 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   + DS+    +V    ++              + A +  
Sbjct: 450 AWQELPGEGAFYGPKIEYH---MKDSIGRAWQVGTMQVDF--------MMPERLDAEYVD 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              +    V +    +G+M     V+   + G   +W   V    +++           D
Sbjct: 499 EHSQRVRPVMLHRAIVGSMERFIGVLIEHYAGAMPLWLAPVQTVVMNIT------DAQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L+K G  V  D   E+I  +     L   P  ++VG +      + ++ R  
Sbjct: 553 YARSVAQALTKQGFRVELDLRNEKINYKIRENALSKVPYLLVVGDQERDAGTIAVRARGN 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                +SLE +    S    + 
Sbjct: 613 VNLGVLSLEALTQKLSQEVQSR 634


>gi|294793964|ref|ZP_06759101.1| threonine--tRNA ligase [Veillonella sp. 3_1_44]
 gi|294455534|gb|EFG23906.1| threonine--tRNA ligase [Veillonella sp. 3_1_44]
          Length = 636

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 143/441 (32%), Gaps = 40/441 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I +   G   +LP G    + +    RE  +   
Sbjct: 233 YLHMLEEAAKRDHRKLGKELGLFV--IKEEGPGFPFFLPKGMALRNELENFWREVHHEFE 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +  Y + M      +++     P +      ++++ + SY
Sbjct: 291 YEEIRTPIILNKQLWETSGHWFHYRENMYT-TIIDEEEYAIKPMNCPGGILVYQNEMHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+ P  + ++ L  R EL     G+ R R F   DA+ F L  +        + +     
Sbjct: 350 RDFPLRYAELGLVHRHELSGALHGLFRVRAFTQDDAHVFMLPSQMQSELMKVIELF---- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                            I      ++ V   T            +    +     +    
Sbjct: 406 ---------------DRIYSQFGLKYHVELSTKPDNAMGDDAIWEAATEALRNAIEAKGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D H E   DSL    +     +++                 + G
Sbjct: 451 PYVINPGDGAFYGPKLDYHIE---DSLGRTWQCGTIQLDMNLP--------ERFQIEYVG 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   M              I    +     +P  +AP ++ ++ I    +   + 
Sbjct: 500 EDGQKHRPIMIHRACFGSMERFIGIL--TEHYAGAFPTWMAPVQVKILPI---SEKHVEY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  ++ +    V  DD  E+IG +   A +   P  ++VG K V +  V ++     
Sbjct: 555 AKDLAKQMHRDYVRVEVDDRSEKIGYKIRQAQMAKVPYMLVVGDKEVEEGTVNVRKHGGD 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
               +  EE  N         
Sbjct: 615 ELGSVPFEEFFNSIKTEIKER 635


>gi|269798232|ref|YP_003312132.1| threonyl-tRNA synthetase [Veillonella parvula DSM 2008]
 gi|269094861|gb|ACZ24852.1| threonyl-tRNA synthetase [Veillonella parvula DSM 2008]
          Length = 636

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 143/441 (32%), Gaps = 40/441 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I +   G   +LP G    + +    RE  +   
Sbjct: 233 YLHMLEEAAKRDHRKLGKELGLFV--IKEEGPGFPFFLPKGMALRNELENFWREVHHEFE 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +  Y + M      +++     P +      ++++ + SY
Sbjct: 291 YEEIRTPIILNKQLWETSGHWFHYRENMYT-TIIDEEEYAIKPMNCPGGILVYQNEMHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+ P  + ++ L  R EL     G+ R R F   DA+ F L  +        + +     
Sbjct: 350 RDFPLRYAELGLVHRHELSGALHGLFRVRAFTQDDAHVFMLPSQMQSELMKVIELF---- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                            I      ++ V   T            +    +     +    
Sbjct: 406 ---------------DRIYSQFGLKYHVELSTKPDNAMGDDAIWEAATEALRNAIEAKGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D H E   DSL    +     +++                 + G
Sbjct: 451 PYVINPGDGAFYGPKLDYHIE---DSLGRTWQCGTIQLDMNLP--------ERFQIEYVG 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   M              I    +     +P  +AP ++ ++ I    +   + 
Sbjct: 500 EDGQKHRPIMIHRACFGSMERFIGIL--TEHYAGAFPTWMAPVQVKILPI---SEKHVEY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  ++ +    V  DD  E+IG +   A +   P  ++VG K V +  V ++     
Sbjct: 555 AKDLAKQMHRDYVRVEVDDRSEKIGYKIRQAQMAKVPYMLVVGDKEVEEGTVNVRKHGGD 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
               +  EE  N         
Sbjct: 615 ELGSVPFEEFFNSIKTEIKER 635


>gi|160936998|ref|ZP_02084362.1| hypothetical protein CLOBOL_01887 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440188|gb|EDP17935.1| hypothetical protein CLOBOL_01887 [Clostridium bolteae ATCC
           BAA-613]
          Length = 636

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 148/441 (33%), Gaps = 39/441 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M  +   G   +LP G    + +    RE   R G
Sbjct: 232 YLTMMEEAKKRDHRKLGKELGLF--MFAEEGPGFPFFLPKGMTLKNTLIDYWREIHYRDG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + S  LW  SG +D Y   M      +++     P +      ++++   SY
Sbjct: 290 YQEVSTPIILSRKLWENSGHWDHYKDNMYT-TVIDEEDYAVKPMNCPGGMLVYKNQPHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E   +  G+MR R F   DA+ F    +  +     +      +
Sbjct: 349 RDLPLKVGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMRDDQI-EDQIKGVTKLINEV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G +   +   + P     S E                   +          +D+  
Sbjct: 408 YTQFGFEYF-VELSTRPEDSMGSDE-----------------DWEMATNGLRKALEDMGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DSL    +     ++    F    ++ L  +A    
Sbjct: 450 DYIVNEGDGAFYGPKIDFH---LRDSLGRTWQCGTIQLD----FQMPQRFDLEYTAE--- 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              K   + +     G++     ++     GK  +W   V    I +       +   D 
Sbjct: 500 DGSKKRPIMIHRVCFGSIERFIGILIEHFAGKFPVWLAPVQVKVIPV------SEKSMDY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +Y +L   G     D   E++G +   A L   P  +++G K  ++  + ++ R  G
Sbjct: 554 ATGVYEKLKAAGIRTELDHKDEKVGYKIRQAQLEKVPYMLVLGEKEAAEGAITVRSRDKG 613

Query: 425 IREDMSLEEVINYASHRFSNN 445
                 L+  I          
Sbjct: 614 DLGAAGLDAFIEDIKKMIQTK 634


>gi|240016048|ref|ZP_04722588.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA6140]
          Length = 648

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 469 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 509

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  ++ G   +W   V    +++       +   D
Sbjct: 510 ENNDRARPVMLHRAILGSLERFVGILIENYAGSFPLWLAPVQMVIMNIT------ENQAD 563

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 564 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 622

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 623 EDLGSLDLDDFIAQLQQEITD 643


>gi|325127774|gb|EGC50682.1| threonyl-tRNA synthetase [Neisseria meningitidis N1568]
          Length = 637

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 160/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E         
Sbjct: 407 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    ++A +  
Sbjct: 458 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LNAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQLVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|326570601|gb|EGE20637.1| threonyl-tRNA synthetase [Moraxella catarrhalis BC7]
          Length = 639

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 151/447 (33%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L    + + + G+  W P G      +   +R+ 
Sbjct: 226 KQLKAYLQRLEEAEKRDHRKIGKALNLF--HMQEQAPGMVFWHPNGWTIWQVLEQYMRKV 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q   G +E+  P +    LW +SG +D+Y  EM+       +     P +      +F  
Sbjct: 284 QKDNGYLEIKTPQIVDRSLWEKSGHWDNY-GEMMFTTASEKRDYAIKPMNCPCHVQVFNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +  + +      
Sbjct: 343 GLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTNAQIRQEA-LNFIK 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L ++   G   I M+  + P     + E                   D    +     
Sbjct: 402 LTLDVYKDFGFDHIQMKLSTRPEKRVGADE-----------------LWDLAEQALADAL 444

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D+      +     A Y    +     L D +    +     ++    F    +    ++
Sbjct: 445 DNAGLDWELQAGEGAFYGPKIEF---SLQDCIGRVWQCGTLQLD----FNLPER----LN 493

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A F G  G+      +    +G+      ++   + G    W        +++       
Sbjct: 494 AEFVGESGERERPVMLHRAILGSFERFIGILIEHYAGLFPAWLAPQQVVVMNIT------ 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D+   + ++L+  G     D   E+IG +     L   P  +I+G K V    V +
Sbjct: 548 DKQADSVGDVVSKLNAKGYRAISDLRNEKIGFKIRERTLERIPFMLILGDKEVESGTVNV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       M+L++ I          
Sbjct: 608 RTRTGENLGSMNLDDFIAVLDKAIEKK 634


>gi|268594343|ref|ZP_06128510.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|268547732|gb|EEZ43150.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
          Length = 638

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 232 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWRTIEQHMRKELNAAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 290 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 349 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 408 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 459 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 499

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 500 ENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 554 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 612

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 613 EDLGSLDLDDFIAQLQQEITD 633


>gi|220934623|ref|YP_002513522.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
 gi|259516780|sp|B8GRI1|SYT_THISH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219995933|gb|ACL72535.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 643

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/442 (15%), Positives = 144/442 (32%), Gaps = 38/442 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y   + +   RD      +L L +  I +    G+  W P G +    +     +   R 
Sbjct: 231 YLHRLAEAERRDHRRIGTELNLFS--IQEDAGGGLVFWHPKGARIRRAIEQFWFDMHERA 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + + DLW  SG  D Y + M    + +++A    P +      +++  + S
Sbjct: 289 GYQFLYTPHIANLDLWKTSGHADFYSESMYEPMEDDNQAFQLKPMNCPFHVLVYKDRLHS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + ++   +R E+     G+MR R F   DA+ F    +  +    ++    L 
Sbjct: 349 YRDLPLRWAEMGTVYRREMSGALHGLMRVRGFTQDDAHIFCR-EDQIEAEILRILDLTLE 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G     +   + P                  +   S    +    +     +   
Sbjct: 408 VLQAFGFDDFDVNLSTRP-----------------DKAVGSDQIWEHATAALKAALEKKG 450

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              S+ E   A Y    D+   K+ D++    + S   ++    F    ++ +   A   
Sbjct: 451 LDYSVDEGGGAFYGPKIDI---KIRDAIGREWQCSTVQLD----FNLPERFEMEYVAE-- 501

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               +   +   +      R    +IE       +                        D
Sbjct: 502 DNSRRRPIMIHRALLGSVERFFGVLIEHYAGSFPLWLAPVQVQVLTIT-------DRQDD 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  RL   G     D   E+IG +     L   P  +++G + +  + V ++ R  
Sbjct: 555 YAREVADRLRNRGIRADADLRNEKIGFKIREHTLQRVPYLLVLGDREMETNTVAVRTRSG 614

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M L ++    +   ++ 
Sbjct: 615 EDLGSMDLNQLSERLAGEIASR 636


>gi|254493203|ref|ZP_05106374.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268598466|ref|ZP_06132633.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|226512243|gb|EEH61588.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268582597|gb|EEZ47273.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
          Length = 637

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 407 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 458 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|225028654|ref|ZP_03717846.1| hypothetical protein EUBHAL_02933 [Eubacterium hallii DSM 3353]
 gi|224954040|gb|EEG35249.1| hypothetical protein EUBHAL_02933 [Eubacterium hallii DSM 3353]
          Length = 591

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 91/444 (20%), Positives = 161/444 (36%), Gaps = 48/444 (10%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T M  +   G   +LP G    + +    R+   R G
Sbjct: 184 YLNMLEEAKKRDHRKLGKELGLFTIM--EEGPGFPFFLPKGMILKNTLIDYWRKMHTREG 241

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P L +  LW  SG +D Y + M      +D      P +      +++   +SY
Sbjct: 242 YEEISTPILLNRQLWETSGHWDHYRENMYT-TVIDDMDFAVKPMNCPGGMLVYKMEPRSY 300

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP    ++ L  R E   +  G+MR R F   DA+ F +T    ++   K+      +
Sbjct: 301 KELPLRLGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIF-MTEAQIENEIQKVVKLIDEV 359

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G     +   + P     + E                   +    +       +  
Sbjct: 360 YKKFGFTYH-VELSTRPADSMGTEE-----------------EWEVATNALENAIKAMNI 401

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+    +     ++    F    ++     A + G
Sbjct: 402 PYEVNEGDGAFYGPKLDFH---LQDSIGRTWQCGTIQLD----FQLPQRF----EAEYIG 450

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++   + GK   W   +AP +  ++ +        D
Sbjct: 451 ADGEKHRPIMIHRVVFGSIERFIGILIEHYAGKFPTW---LAPVQAKVLPVSDK---FAD 504

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-- 421
             +++   L   G  V  DD  E++G +   A L   P  +I+G K  S   V ++ R  
Sbjct: 505 YAKQVAEALKASGVRVEVDDRDEKLGYKIRQAQLQKVPYMLILGEKEQSAGTVSVRKRDL 564

Query: 422 ----LTGIREDMSLEEVINYASHR 441
                +     MS+EE        
Sbjct: 565 IDENDSPELGTMSVEEFAAIIKEE 588


>gi|331085681|ref|ZP_08334764.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406604|gb|EGG86109.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 643

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 144/442 (32%), Gaps = 39/442 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L T  I +   G   +LP G    + +    RE   R 
Sbjct: 229 EYLAKIEEAKKRDHRKLGKELGLFT--ILEEGPGFPIFLPKGMILKNTLIDYWREVHTRA 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E+S P + +  LW  SG +  Y + M      +++     P +      ++++   S
Sbjct: 287 GYVEISTPIMLNKQLWETSGHWAHYKENMYT-TVIDEEDFAIKPMNCPGGILVYKTEPHS 345

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++    R E      G+MR R F   DA+ F    +       K     + 
Sbjct: 346 YRDLPLRMGELGTVHRHEKSGALHGLMRVRSFTQDDAHIFMTREQIKDE--IKGVARLID 403

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
             + L      +   + P     S E                   D    +  +  D++ 
Sbjct: 404 EVYSLFGFKYHVELSTKPEDSMGSQE-----------------DWDIATDALRSALDELQ 446

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D H E   D+L    +     ++    F    ++ +   A   
Sbjct: 447 LPYVINEGDGAFYGPKIDFHLE---DTLGRTWQCGTIQLD----FQLPLRFEMEYIAA-- 497

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +     +          R +  +IE                            +   +
Sbjct: 498 DGEKHRPIMVHRVVFGSIERFIGILIEHFAGAFPTWLAPEQVKVLPI-------SEKYHE 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A+L +       D+  E+IG +   A L   P  ++VG+K   +  V ++ R  
Sbjct: 551 YANEVAAKLKEAKIRCSVDERSEKIGYKIRDARLNKIPYMLVVGAKEQEEGVVSVRSRFL 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G     SL+  I   +    N 
Sbjct: 611 GDEGQRSLDTFIAEITEEIKNR 632


>gi|251789558|ref|YP_003004279.1| threonyl-tRNA synthetase [Dickeya zeae Ech1591]
 gi|247538179|gb|ACT06800.1| threonyl-tRNA synthetase [Dickeya zeae Ech1591]
          Length = 642

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 143/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S Y   + +   RD      +L L    + + + G+  W   G      + A +R +  
Sbjct: 229 LSAYLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW ++G +++Y + M       ++     P +      IF   +
Sbjct: 287 EYQYQEVKGPFMMDRVLWEKTGHWENYKEAMFT-TSSENREYCIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +      N      
Sbjct: 346 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEDQVRDE-VNNCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G + I ++  + P     S E                   D           +
Sbjct: 405 YDMYSTFGFEKIVVKLSTRPEKRIGSDE-----------------TWDRAEEDLAAALTE 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y    +     L D L    +     ++    F    + S    A+
Sbjct: 448 NGLPFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----AS 496

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G + +    V +    +G+M     ++     G    W   V    +++         
Sbjct: 497 YVGENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ 
Sbjct: 551 QSDYVSELTRKLQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       M++ EVI        + 
Sbjct: 611 RRGKDLGSMNVSEVITKLQEEIRSR 635


>gi|325661884|ref|ZP_08150505.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471862|gb|EGC75079.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 643

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 144/442 (32%), Gaps = 39/442 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L T  I +   G   +LP G    + +    RE   R 
Sbjct: 229 EYLAKIEEAKKRDHRKLGKELGLFT--ILEEGPGFPIFLPKGMILKNTLIDYWREVHTRA 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E+S P + +  LW  SG +  Y + M      +++     P +      ++++   S
Sbjct: 287 GYVEISTPIMLNRQLWETSGHWAHYKENMYT-TVIDEEDFAIKPMNCPGGILVYKTEPHS 345

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++    R E      G+MR R F   DA+ F    +       K     + 
Sbjct: 346 YRDLPLRMGELGTVHRHEKSGALHGLMRVRSFTQDDAHIFMTREQIKDE--IKGVARLID 403

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
             + L      +   + P     S E                   D    +  +  D++ 
Sbjct: 404 EVYSLFGFKYHVELSTKPEDSMGSQE-----------------DWDIATDALRSALDELQ 446

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D H E   D+L    +     ++    F    ++ +   A   
Sbjct: 447 LPYVINEGDGAFYGPKIDFHLE---DTLGRTWQCGTIQLD----FQLPLRFEMEYIAA-- 497

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +     +          R +  +IE                            +   +
Sbjct: 498 DGEKHRPIMVHRVVFGSIERFIGILIEHFAGAFPTWLAPEQVKVLPI-------SEKYHE 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A+L +       D+  E+IG +   A L   P  ++VG+K   +  V ++ R  
Sbjct: 551 YANEVAAKLKEAKIRCSVDERSEKIGYKIRDARLNKIPYMLVVGAKEQEEGVVSVRSRFL 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G     SL+  I   +    N 
Sbjct: 611 GDEGQRSLDTFIAEITEEIKNR 632


>gi|326426858|gb|EGD72428.1| prolyl-tRNA synthetase [Salpingoeca sp. ATCC 50818]
          Length = 447

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 144/440 (32%), Positives = 234/440 (53%), Gaps = 19/440 (4%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           + F+P+L+E P+ A   SH+L+LR G I Q   G+Y+ LP+  + +  + +++R E N  
Sbjct: 11  RLFVPLLKEVPKHAVAHSHQLLLRGGYIWQAGSGLYALLPMANRVVQRLQSLVRAELNAI 70

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G+ E  +P +    LW +SGR+   G E+ RL DR   A     THEE +T +  S + S
Sbjct: 71  GSQECVLPAITDKHLWQQSGRWQEAGDELFRLEDRKGAAYCLAATHEETVTALVSSLVSS 130

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+LP   YQ+Q K+RDE+RPR+G++R REF+MKD Y+FD + + ++ +Y K+   Y RI
Sbjct: 131 HRSLPLYLYQMQPKYRDEMRPRYGLLRCREFMMKDMYTFDSSEQDARATYAKVVECYQRI 190

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             RLG+    ++A++G IGG LSHEF + A+ GE ++       +     E         
Sbjct: 191 LQRLGVPFAKVQADTGLIGGSLSHEFQIKAEIGEDELIFCDTC-NQAANIEK-------- 241

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               ++         S   +             +++GIEVGH F  GTKYS    A F  
Sbjct: 242 ----IDGLIDACPHASPSPSTSPRPPSASCSWTTSKGIEVGHAFLLGTKYSTVFDAAFLD 297

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           AD +   + MG YG+G  R+++AV E+ HD +G+IWP ++APF +S+ ++   +    + 
Sbjct: 298 ADSQRQDIHMGCYGLGLTRMLSAVAEAQHDAEGLIWPIAMAPFVVSIASVGRMNTFKDEK 357

Query: 365 CEKIYARLSKV----GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           C  +Y  L+         V  D        + A + ++G P  V+VG  +     +E+  
Sbjct: 358 CRALYEVLNSRPELSDLIV-LDTRDMSPRHKLANSRMVGIPFTVLVGD-WFDSEHLEVYA 415

Query: 421 RLTGIREDMSLEEVINYASH 440
           R +  ++DMS+EE ++  S 
Sbjct: 416 RTSHDKQDMSVEEFVSLLSS 435


>gi|260893515|ref|YP_003239612.1| threonyl-tRNA synthetase [Ammonifex degensii KC4]
 gi|260865656|gb|ACX52762.1| threonyl-tRNA synthetase [Ammonifex degensii KC4]
          Length = 637

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 142/430 (33%), Gaps = 40/430 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      +L L +    +   G   + P G    + + A+ R E  R G  E+  P L  
Sbjct: 242 DHRRLGQELDLFS--FQEEGPGFPFFHPKGMIVRNELEALWRREHYRRGYQEIRTPILLK 299

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            +LW  SG +D Y + M    + + +     P +      I++  + SYR LP    ++ 
Sbjct: 300 RELWERSGHWDHYKENM-YFLEIDGQPYAVKPMNCPGAILIYQQRVHSYRELPLRLAEMG 358

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           L  R EL     G+MR R F   DA+ F    +  K     +       + ++      +
Sbjct: 359 LVHRHELSGVLHGLMRVRSFTQDDAHIFCR-EDQVKEEILGIIDLVDYFYRQVFGFPYHV 417

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              + P                           +    +     ++      I E   A 
Sbjct: 418 ELSTRPEKS-----------------MGDDHIWELATSALKEALEERGFAYKINEGEGAF 460

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QM 314
           Y    D H E              R  + G I              + G DG+ H    +
Sbjct: 461 YGPKIDFHLED----------CLGRTWQCGTI-QLDFLMPEKFDLFYIGEDGQRHRPVML 509

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++    A++    +     +P  +AP ++ ++ I            +IY  LS+
Sbjct: 510 HRVIFGSLERFMAILI---EHFAGAFPLWLAPVQVRILPITDRHH---AYARQIYELLSR 563

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V  D   E++  +   A +   P  +++G K ++   V ++HR  G    M+ E  
Sbjct: 564 ADLRVELDARNEKVSYKVREAQVQKIPYMLVIGDKEMNSGTVAVRHRSRGDLGAMTPEAF 623

Query: 435 INYASHRFSN 444
           +         
Sbjct: 624 LEKVREEIRT 633


>gi|304387978|ref|ZP_07370150.1| threonine--tRNA ligase [Neisseria meningitidis ATCC 13091]
 gi|304337977|gb|EFM04115.1| threonine--tRNA ligase [Neisseria meningitidis ATCC 13091]
          Length = 643

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 160/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 237 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 294

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 295 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 354 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E         
Sbjct: 413 YKQFGFHDVSVKLSLRPEQRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 463

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 464 --------GAFYGPKIEYH---VRDALGRSWQCGTLQLD----FVLPER----LDAEYVT 504

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  ++ G   +W   V    +++       +   D
Sbjct: 505 ENNDRARPVMLHRAILGSLERFIGILIENYAGSFPLWLAPVQLVIMNIT------ENQAD 558

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 559 YCREVAAKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 617

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 618 EDLGSLDLDDFIAQLQQEITD 638


>gi|240115143|ref|ZP_04729205.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|291044371|ref|ZP_06570080.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|291011265|gb|EFE03261.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
          Length = 648

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 469 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 509

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 510 ENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 563

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 564 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 622

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 623 EDLGSLDLDDFIAQLQQEITD 643


>gi|163857146|ref|YP_001631444.1| threonyl-tRNA synthetase [Bordetella petrii DSM 12804]
 gi|229557977|sp|A9IRH6|SYT_BORPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|163260874|emb|CAP43176.1| thrS [Bordetella petrii]
          Length = 650

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 141/446 (31%), Gaps = 41/446 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E  R D       L L        + G+  W P G      V   +R   N  G
Sbjct: 236 YLHMLEEAERRDHRKIGRDLDLF--HFQDEAPGLIFWHPKGWALWQQVEQYMRAVYNDNG 293

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y + M    +  ++     P +      IF + + SY
Sbjct: 294 YQEVKAPQILDLSLWKKTGHWDNYRENMFT-TESENRVYGLKPMNCPGHVQIFNAGLHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + +     R+E      G+MR R F   D + F    +                
Sbjct: 353 RELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIFCTEDQLQDEC----------- 401

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                  +               HE +    T   +   S D  D    +          
Sbjct: 402 -------ADFTALLQKVYRDFGFHEVLYKVATRPEKRIGSDDIWDKAETALMESLRRTGC 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    +     L D++  + +     ++       G        A +  
Sbjct: 455 EFEISPGEGAFYGPKIEY---TLKDAIGRHWQCGTVQVDFSMPVRLG--------AEYVD 503

Query: 305 -ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             D +   V +    +G++     ++  +H G    W   V      +       +   D
Sbjct: 504 AQDQRRAPVMLHRAILGSLERFIGMLIENHAGAMPPWLAPVQAVVCCI------SEPSAD 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I   L K G  V  D  GE+I  +     L   P  ++VG K   +  V ++    
Sbjct: 558 YAAQITQTLKKQGFRVQSDLRGEKITRKIREHSLQKVPYILVVGDKEKQNGTVAVRGLGG 617

Query: 424 GIREDMSLEEVINYASHRFSNNRPVL 449
                ++LE+     +   +  R V+
Sbjct: 618 LDLGVIALEDFAARLAEDVAARRDVV 643


>gi|92113922|ref|YP_573850.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Chromohalobacter salexigens DSM 3043]
 gi|123387452|sp|Q1QWK7|SYT_CHRSD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91797012|gb|ABE59151.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Chromohalobacter salexigens DSM 3043]
          Length = 632

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 150/443 (33%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD    + KL      + + + G+  W P G      V   +R  
Sbjct: 226 KALKTYLKRLEEAEKRDHRKLARKLDFF--HMQEEAPGMVFWHPRGWTLWQTVEQYMRGV 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
              +G  E+  P +    LW +SG +D+Y + M    +   +     P +      +F S
Sbjct: 284 YKDSGYQEIRCPQIMDVSLWQKSGHWDNYAENMF-FTESEKREYALKPMNCPGHVQVFNS 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR LP  + +     R+E      G+MR R F   D + F    +           
Sbjct: 343 GLRSYRELPVRYGEFGGCHRNEPSGALHGIMRVRAFTQDDGHVFCTEEQIEPEVTAFHRQ 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L ++   G   I ++    P     S +    A+          D     +P E    
Sbjct: 403 -ALAVYRDFGFDDIAVKIALRPEKRLGSDDNWDRAEEALRNALSRCDVEWEELPGE---- 457

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                         A Y    + H   + D L    +V    ++       G        
Sbjct: 458 -------------GAFYGPKIEYH---MRDCLGREWQVGTMQVDFMMPTRLG-------- 493

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   DG     V +    +G+M     ++   + G   +W   +    +++       
Sbjct: 494 AQYVAEDGSRQAPVMLHRAIVGSMERFIGILIEHYAGSMPLWLSPLQAVVLNIT------ 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              R+  E +  RL K G  V  D   E+IG +     L   P  ++VG K V    V +
Sbjct: 548 DAQREYAESVTQRLQKSGLRVKTDLRNEKIGFKIREHTLQKIPYLLVVGDKEVEAGAVAV 607

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R       +S++ +I      
Sbjct: 608 RTRSGEDLGSLSVDALIARLQEE 630


>gi|241758603|ref|ZP_04756718.1| threonine--tRNA ligase [Neisseria flavescens SK114]
 gi|241321255|gb|EER57427.1| threonine--tRNA ligase [Neisseria flavescens SK114]
          Length = 637

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNVAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVDEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S E    A+ G      +       +P E         
Sbjct: 407 YKQFGFHDVAVKLSLRPEQRAGSDEVWDKAEQGLRDALTACGVEWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    ++A +  
Sbjct: 458 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LNAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++  +L   G  V  D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 553 YCREVAVKLQAAGFRVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + +++ I       ++
Sbjct: 612 EDLGSLDVDDFIAQLQQEITD 632


>gi|45658307|ref|YP_002393.1| threonyl-tRNA synthetase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|59798553|sp|Q72PK6|SYT_LEPIC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|45601549|gb|AAS71030.1| threonyl-tRNA synthetase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 638

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 152/443 (34%), Gaps = 40/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      ++ L +    +   G   W P G    +++   +R E N+ 
Sbjct: 234 QYLFQIEEAKKRDHRKIGKEMDLFS--FQKEGPGFPFWHPKGTILWNSLAEYLRSECNKR 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + S++LW +SG +D++ + M    D +++     P +    + I++ H+ S
Sbjct: 292 GYQEIKTPAVLSSELWKKSGHWDNFHENM-YFTDIDEEDYALKPMNCPGCSLIYKHHLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  F +     R EL     G+ R R F   D++ +             +      
Sbjct: 351 YRELPLRFAEFGSVHRHELHGVLHGLFRVRAFTQDDSHIYAPLDYLESE-VMDIIDFTFT 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++ + G         + P       E                   +F   +     +   
Sbjct: 410 VYKKFGFSEFKTFIATRPEKSQGKDE-----------------DWEFATSTLKQSLEKKG 452

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    +     + DS+    +     ++                  + 
Sbjct: 453 IPYGIKEGEGAFYGPKIEF---NIKDSIGRLWQCGTIQVDFSMP--------ERFDLDYT 501

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            +DG+      +     G++     ++   ++GK  +W         + I I    +   
Sbjct: 502 DSDGQKKRPVMIHRAIYGSLERFIGILIEHYEGKFPLW------ISPNQIRILTVTEKVT 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  + +Y  L   G  V  D   E+IG++   + L      +I+G K +  + + ++ R 
Sbjct: 556 DYAKNVYRELLDSGFRVELDTRNEKIGAKIRDSILKKANYLLILGEKEMESNTLAVRMRG 615

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
               + ++    I+       ++
Sbjct: 616 QEDTKILTRTGFISNLQDEIKSS 638


>gi|260441039|ref|ZP_05794855.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|268600819|ref|ZP_06134986.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|268584950|gb|EEZ49626.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
          Length = 637

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 407 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 458 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|326563502|gb|EGE13765.1| threonyl-tRNA synthetase [Moraxella catarrhalis 103P14B1]
 gi|326573810|gb|EGE23767.1| threonyl-tRNA synthetase [Moraxella catarrhalis 101P30B1]
          Length = 639

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 150/447 (33%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L    + + + G+  W P G      +   +R+ 
Sbjct: 226 KQLKAYLQRLEEAEKRDHRKIGKALNLF--HMQEQAPGMVFWHPNGWTIWQVLEQYMRKV 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q   G +E+  P +    LW +SG +D+Y  EM+       +     P +      +F  
Sbjct: 284 QKDNGYLEIKTPQIVDRSLWEKSGHWDNY-GEMMFTTASEKRDYAIKPMNCPCHVQVFNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +  + +      
Sbjct: 343 GLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTNAQIRQEA-LNFIK 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L ++   G   I M+  + P     + E                   D    +     
Sbjct: 402 LTLDVYKDFGFDHIQMKLSTRPEKRVGADE-----------------LWDLAEQALADAL 444

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D+      +     A Y    +     L D +    +     ++    F    +    + 
Sbjct: 445 DNAGLDWELQAGEGAFYGPKIEF---SLQDCIGRVWQCGTLQLD----FNLPER----LD 493

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A F G  G+      +    +G+      ++   + G    W        +++       
Sbjct: 494 AEFVGESGERERPVMLHRAILGSFERFIGILIEHYAGLFPAWLAPQQVVVMNIT------ 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D+   + ++L+  G     D   E+IG +     L   P  +I+G K V    V +
Sbjct: 548 DKQADSVGDVVSKLNAKGYRAISDLRNEKIGFKIRERTLERIPFMLILGDKEVESGTVNV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       M+L++ I          
Sbjct: 608 RTRTGENLGSMNLDDFIAVLDKAIEKK 634


>gi|325133766|gb|EGC56422.1| threonyl-tRNA synthetase [Neisseria meningitidis M13399]
 gi|325144077|gb|EGC66385.1| threonyl-tRNA synthetase [Neisseria meningitidis M01-240013]
 gi|325206438|gb|ADZ01891.1| threonyl-tRNA synthetase [Neisseria meningitidis M04-240196]
          Length = 637

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 160/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E         
Sbjct: 407 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    ++A +  
Sbjct: 458 --------GAFYGPKIEYH---VRDALGRSWQCGTLQLD----FVLPER----LNAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|240117427|ref|ZP_04731489.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
          Length = 648

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 469 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 509

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 510 ENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 563

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 564 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 622

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 623 EDLGSLDLDDFIAQLQQEITD 643


>gi|331269136|ref|YP_004395628.1| threonyl-tRNA synthetase [Clostridium botulinum BKT015925]
 gi|329125686|gb|AEB75631.1| threonyl-tRNA synthetase [Clostridium botulinum BKT015925]
          Length = 637

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 154/441 (34%), Gaps = 42/441 (9%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L    + +   G   + P G    + +    RE   + G 
Sbjct: 232 LHMLEEAKKRDHRKLGKELGLFD--LKEEGPGFPFFYPKGMILRNTLENYWREMHEKAGY 289

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y + M      + +     P +      +++S + SYR
Sbjct: 290 GEIRTPIILNEKLWHQSGHWDHYKENM-YFTKIDGEDYAIKPMNCPGSILVYKSDLHSYR 348

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++ L  R E      G+MR R F   DA+ F    + +      +       +
Sbjct: 349 ELPIRLGELGLVHRHEYSGALHGLMRVRNFTQDDAHIFMTKEQITSE-ILGVIKMIDNFY 407

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G +   +   + P     S E                   +          ++    
Sbjct: 408 GLFGFEYF-VELSTRPEDSMGSDE-----------------DWEDATNGLVKALNEAGLE 449

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    D H           +    R  + G I     +       ++ GA
Sbjct: 450 YKINEGDGAFYGPKIDFHL----------RDCLGRTWQCGTI-QLDFQMPERFDLSYVGA 498

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H          G++     ++   + G    W   +AP ++ ++NI  +     + 
Sbjct: 499 DGEKHRPVMAHRVIFGSIERFIGILTEHYAGAFPTW---LAPVQVKIMNITDN---QVEY 552

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           C++I   L + G  V  D   E+IG +   A L   P  +++G K ++++ + ++ R  G
Sbjct: 553 CKEIEKTLKENGIRVELDLRNEKIGYKIREAQLQKIPYMLVLGDKEMNENTIAVRSRKQG 612

Query: 425 IREDMSLEEVINYASHRFSNN 445
               M L + +          
Sbjct: 613 DLGAMQLVDFVAMVKKEVQEK 633


>gi|316983701|gb|EFV62682.1| threonyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 648

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 160/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLIRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E         
Sbjct: 418 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    ++A +  
Sbjct: 469 --------GAFYGPKIEYH---VRDALGRSWQCGTLQLD----FVLPER----LNAEYVT 509

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 510 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQLVIMNIT------ENQAD 563

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 564 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 622

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 623 EDLGSLDLDDFIAQLQQEITD 643


>gi|289208097|ref|YP_003460163.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
 gi|288943728|gb|ADC71427.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
          Length = 638

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/446 (16%), Positives = 147/446 (32%), Gaps = 38/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             +Y   + +   RD      +L L +  I  +   G+  W P G +    +     +  
Sbjct: 228 LKEYLERLKEAERRDHRKIGQELDLFS--IQDEAGGGLVFWHPKGARIRREIEKYWYDMH 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G   +  P + + +LW  SG  D Y + M    +   +A    P +      +++  
Sbjct: 286 EKAGYDFVVSPHIANLELWKTSGHADFYAESMYEPMEDEHQAFQLKPMNCPFHVLMYKDR 345

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+LP  + ++   +R E+     G+MR R F   DA+ F    +  +     +   
Sbjct: 346 LHSYRDLPLRWAEMGTVYRREMSGALHGLMRVRGFTQDDAHIFCR-EDQIEAEVMAVIDL 404

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L +    G                   +F V   T       S +  +    S  +  +
Sbjct: 405 TLEVLQTFG-----------------FEKFDVNLSTKPEDAVGSDEIWEHATASLRSAIE 447

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 S+ E   A Y    D+   K+ D++    + S   ++    F    ++ +   A
Sbjct: 448 KKGLEYSVDEGGGAFYGPKIDI---KIHDAIGREWQCSTVQLD----FNLPERFDMEYVA 500

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                + +   +   +      R    +IE              A             + 
Sbjct: 501 E--DNERRRPIMIHRALLGSVERFFGVLIEHYAGHFPTWLAPVQAEVLTIT-------ER 551

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L   G  V  D   E+IG +     L   P  +++G K + + +V ++ 
Sbjct: 552 QDDYAREVTRALRDKGFRVESDLRNEKIGFKIREHTLKRVPYLLVLGDKEMENGQVAVRT 611

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R       MS+E          ++ +
Sbjct: 612 RSGEDLGVMSVEAFGERLREEVASRQ 637


>gi|24213940|ref|NP_711421.1| threonyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
 gi|59798590|sp|Q8F6R1|SYT_LEPIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|24194795|gb|AAN48439.1|AE011305_9 threonyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 638

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 152/443 (34%), Gaps = 40/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      ++ L +    +   G   W P G    +++   +R E N+ 
Sbjct: 234 QYLFQIEEAKKRDHRKIGKEMDLFS--FQKEGPGFPFWHPKGTILWNSLAEYLRSECNKR 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + S++LW +SG +D++ + M    D +++     P +    + I++ H+ S
Sbjct: 292 GYQEIKTPAVLSSELWKKSGHWDNFHENM-YFTDIDEEDYALKPMNCPGCSLIYKHHLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  F +     R EL     G+ R R F   D++ +             +      
Sbjct: 351 YRELPLRFAEFGSVHRHELHGVLHGLFRVRAFTQDDSHIYAPLDYLESE-VMDIIDFTFT 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++ + G         + P       E                   +F   +     +   
Sbjct: 410 VYKKFGFSEFKTFIATRPEKSQGKDE-----------------DWEFATSTLKQSLEKKG 452

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    +     + DS+    +     ++                  + 
Sbjct: 453 IPYGIKEGEGAFYGPKIEF---NIKDSIGRLWQCGTIQVDFSMP--------ERFDLDYT 501

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            +DG+      +     G++     ++   ++GK  +W         + I I    +   
Sbjct: 502 DSDGQKKRPVMIHRAIYGSLERFIGILIEHYEGKFPLW------ISPNQIRILTVTEKVT 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  + +Y  L   G  V  D   E+IG++   + L      +I+G K +  + + ++ R 
Sbjct: 556 DYAKNVYRELLDSGFRVELDTRNEKIGAKIRDSILKKANYLLILGEKEMESNTLAVRMRG 615

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
               + ++    I+       ++
Sbjct: 616 QEDTKILTRTGFISNLQDEIKSS 638


>gi|15895629|ref|NP_348978.1| threonyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|22654130|sp|Q97GK4|SYT_CLOAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15025373|gb|AAK80318.1|AE007736_8 Threonyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|325509777|gb|ADZ21413.1| threonyl-tRNA synthetase [Clostridium acetobutylicum EA 2018]
          Length = 637

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 153/442 (34%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++ +L+E   RD      +L L T  +H+   G   + P G    + +    RE  ++ G
Sbjct: 231 YINMLEEAKKRDHRKIGKELDLFT--MHEEGPGFPFFHPKGMVLKNLLLNYWREVHDKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + +  LW +SG +D Y + M      ++      P +      +++ +I SY
Sbjct: 289 YDEISTPIILNEALWHQSGHWDHYKENM-YFTKIDEADYAIKPMNCPGSILVYKDNIHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +I L  R E      G+MR R F   DA+ F    + ++     +       
Sbjct: 348 RELPIKLAEIGLVHRHEKSGALHGLMRVRCFNQDDAHIFMTKEQITEE-ILGVIKLIDSF 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P     S E                   +          +    
Sbjct: 407 YKVFGFEY-YVELSTRPEDSMGSDE-----------------DWEAATNGLINALNAANL 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H           K    R  + G I     +        + G
Sbjct: 449 EYIVNEGDGAFYGPKIDFHL----------KDCIGRTWQCGTI-QLDFQMPERFDINYIG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++   + G    W   V    +++           +
Sbjct: 498 ADGEKHRPVMVHRVVFGSIERFIGILIEHYAGAFPTWLAPVQVKVMNIT------DSQVE 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + I  +L + G  V  D   E+IG +   A L   P  +++G K + +  + ++ R  
Sbjct: 552 YVDAISEKLKEAGIRVEKDVRNEKIGYKIREAQLKKVPYMIVIGDKEIKEGIISVRSRKE 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M++E+ I   +      
Sbjct: 612 GDLGSMNIEDFIFRINAEVKEK 633


>gi|296113663|ref|YP_003627601.1| threonyl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|295921357|gb|ADG61708.1| threonyl-tRNA synthetase [Moraxella catarrhalis RH4]
          Length = 639

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 150/447 (33%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L    + + + G+  W P G      +   +R+ 
Sbjct: 226 KQLKAYLQRLEEAEKRDHRKIGKALNLF--HMQEQAPGMVFWHPNGWTIWQVLEQYMRKV 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q   G +E+  P +    LW +SG +D+Y  EM+       +     P +      +F  
Sbjct: 284 QKDNGYLEIKTPQIVDRSLWEKSGHWDNY-GEMMFTTASEKRDYAIKPMNCPCHVQVFNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +  + +      
Sbjct: 343 GLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTNAQIRQEA-LNFIK 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L ++   G   I M+  + P     + E                   D    +     
Sbjct: 402 LTLDVYKDFGFDHIQMKLSTRPEKRVGADE-----------------LWDLAEQALADAL 444

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D+      +     A Y    +     L D +    +     ++    F    +    + 
Sbjct: 445 DNAGLDWELQAGEGAFYGPKIEF---SLQDCIGRVWQCGTLQLD----FNLPER----LD 493

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A F G  G+      +    +G+      ++   + G    W        +++       
Sbjct: 494 AEFVGESGERERPVMLHRAILGSFERFIGILIEHYAGLFPAWLAPQQVVVMNIT------ 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D+   + ++L+  G     D   E+IG +     L   P  +I+G K V    V +
Sbjct: 548 DKQADSVGDVVSKLNAKGYRAISDLRNEKIGFKIRERTLERIPFMLILGDKEVESGTVNV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       M+L++ I          
Sbjct: 608 RTRTGENLGSMNLDDFIAVLDKAIEKK 634


>gi|294340009|emb|CAZ88373.1| threonine tRNA synthetase [Thiomonas sp. 3As]
          Length = 639

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 143/442 (32%), Gaps = 41/442 (9%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L +   RD      +L L      + + G+  W P G      V   +R+    +G
Sbjct: 231 YLHALAEAEKRDHRKLGKELDLF--HFQEEAPGLAFWHPKGWALWQAVEQYMRQVYRDSG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG +D+Y + M    +   +     P +      IF S ++SY
Sbjct: 289 YQEVKGPQILDVSLWKRSGHWDNYSENMF-FTESEKRQFAVKPMNCPGHIQIFNSGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F  T +  +          +++
Sbjct: 348 RDLPIRYGEFGSCHRNEPSGALHGLLRVRGFTQDDGHIFC-TEDQIEAEVTAFHQQAMQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P                       +   D    +          
Sbjct: 407 YTDFGFTDIALKIALRPEKR-----------------IGEEAVWDKAEAALRAALQACGV 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   + DS+    +V    ++              + A +  
Sbjct: 450 AWQELPGEGAFYGPKIEYH---MKDSIGRAWQVGTMQVDF--------MMPERLDAEYVD 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              +    V +    +G+M     V+   + G   +W   V    +++           D
Sbjct: 499 EHSQRVRPVMLHRAIVGSMERFIGVLIEHYAGAMPLWLAPVQAVVMNIT------DAQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L+K G  V  D   E+I  +     L   P  ++VG +      + ++ R  
Sbjct: 553 YARSVAQALTKQGFRVELDLRNEKINYKIRENALSKVPYLLVVGDQERDAGTIAVRARGN 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                +SLE +    S    + 
Sbjct: 613 VNLGVLSLEALTQKLSQEVQSR 634


>gi|297617667|ref|YP_003702826.1| threonyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
 gi|297145504|gb|ADI02261.1| threonyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
          Length = 636

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 147/440 (33%), Gaps = 41/440 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   +      G   +LP G    + +    R+E  + G
Sbjct: 231 YLYKLEEAKKRDHRRLGRELGLFVVL--DEGPGFPFFLPKGMIIRNELENFWRQEHVKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG ++ Y + M      +++     P +      +++ ++ SY
Sbjct: 289 YQEIKTPIILNRSLWEKSGHWEHYRENM-YFTTIDEEDYAVKPMNCPGGILVYKQNLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ L  R E      G+MR R F   DA+ F L  + ++     +       
Sbjct: 348 RELPIRLGELGLVHRHEKSGVLHGLMRVRAFTQDDAHIFMLPSQITQE-IKGVIDMVDHF 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G                      V   T   +   S +  +    +     ++   
Sbjct: 407 YRLFGFSY------------------HVELSTKPEKAMGSDEIWEKATGALRQALEEKGM 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H     D          R  + G I             T+ G
Sbjct: 449 EYKINEGDGAFYGPKIDFHLRDSLD----------RTWQCGTI-QLDFLMPEKFDLTYVG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++     G    W   +AP ++ +I I    +    
Sbjct: 498 EDGEKHRPVMIHRVIYGSLERFIGILTEHFGGAFPTW---LAPVQVRIIPIT---ERHHG 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A   + G  V  D   E++G +     L   P  ++VG K   +  V ++ R  
Sbjct: 552 YAVELEAGFREAGLRVESDLRSEKVGYKIREGQLQRIPYLLVVGDKETENKTVSVRKRKE 611

Query: 424 GIREDMSLEEVINYASHRFS 443
           G      + E +N      +
Sbjct: 612 GDLGAQPVAEFLNRIKKEIA 631


>gi|312961943|ref|ZP_07776440.1| Threonyl-tRNA synthetase [Pseudomonas fluorescens WH6]
 gi|311283753|gb|EFQ62337.1| Threonyl-tRNA synthetase [Pseudomonas fluorescens WH6]
          Length = 640

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 148/445 (33%), Gaps = 41/445 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLNLF--HLQEEAPGMVFWHPNGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M       ++     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TQSENRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        + +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEEQMQAES-AAFIKLTMDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + M+  + P     S E                   D    +     D    
Sbjct: 407 YRDFGFTEVEMKLSTRPEKRVGSDE-----------------LWDRAEAALAAALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++       G        A +  
Sbjct: 450 AYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLDFNLPIRLG--------AEYVS 498

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  + H V +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKHPVMLHRAILGSFERFVGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FAAEVEKTLNESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN-RP 447
                M + +   + +   S   RP
Sbjct: 613 ADLGSMPVAQFAEFLAQAVSRRGRP 637


>gi|308388909|gb|ADO31229.1| putative threonyl-tRNA synthetase [Neisseria meningitidis alpha710]
 gi|325202484|gb|ADY97938.1| threonyl-tRNA synthetase [Neisseria meningitidis M01-240149]
 gi|325207764|gb|ADZ03216.1| threonyl-tRNA synthetase [Neisseria meningitidis NZ-05/33]
          Length = 637

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 160/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E         
Sbjct: 407 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    ++A +  
Sbjct: 458 --------GAFYGPKIEYH---VRDALGRSWQCGTLQLD----FVLPER----LNAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|294789007|ref|ZP_06754247.1| threonine--tRNA ligase [Simonsiella muelleri ATCC 29453]
 gi|294483109|gb|EFG30796.1| threonine--tRNA ligase [Simonsiella muelleri ATCC 29453]
          Length = 638

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 156/441 (35%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R E    G
Sbjct: 232 YITRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPRGWALWQVIEQHMRHELTAAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG + +Y   M  L     +     P +      IF   ++SY
Sbjct: 290 YQEVKTPQVMDKTFWEKSGHWANYKDNMF-LTSSEKRDYAVKPMNCPGHVQIFNHALRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    + ++ +        ++I
Sbjct: 349 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIAEETRKFNL-LVMKI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G +++ ++    P     S E    A+ G      +       +P E         
Sbjct: 408 YQQFGFENVSIKLSLRPEKRAGSDEIWDKAEQGLRDALTACGVEWEELPGE--------- 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 459 --------GAFYGPKVEYH---IKDALGRSWQCGTIQLD----FVLPER----LDAEYVT 499

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D      V +    +G++     ++   H G   +W   V    +++       +    
Sbjct: 500 EDNNKARPVMLHRAILGSLERFIGILIEEHAGSFPLWLAPVQMVVMNI------SEGQAA 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A+L   G  V  D   E+IG +      + +P Q+ VG K +++ +V I+    
Sbjct: 554 YAAEVQAKLQAAGFRVDLDTRNEKIGYKIRDNSTMRYPYQLTVGDKEMANGQVSIRK-KA 612

Query: 424 GIREDMSLEEVINYASHRFSN 444
                +S+ E+I       + 
Sbjct: 613 ENLGSVSVNELIEMLKKEIAE 633


>gi|268603124|ref|ZP_06137291.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268587255|gb|EEZ51931.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
          Length = 637

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 407 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 458 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|161869662|ref|YP_001598829.1| threonyl-tRNA synthetase [Neisseria meningitidis 053442]
 gi|189083614|sp|A9M375|SYT_NEIM0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161595215|gb|ABX72875.1| threonyl-tRNA synthetase [Neisseria meningitidis 053442]
          Length = 637

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 157/441 (35%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E         
Sbjct: 407 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++       G        A +  
Sbjct: 458 --------GAFYGPKIEYH---VRDALGRSWQCGTLQLDFVLPERLG--------AEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQLVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|15676618|ref|NP_273762.1| threonyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|22654143|sp|Q9K095|SYT_NEIMB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|7225946|gb|AAF41133.1| threonyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|325140125|gb|EGC62654.1| threonyl-tRNA synthetase [Neisseria meningitidis CU385]
 gi|325200596|gb|ADY96051.1| threonyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 637

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 160/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLIRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E         
Sbjct: 407 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    ++A +  
Sbjct: 458 --------GAFYGPKIEYH---VRDALGRSWQCGTLQLD----FVLPER----LNAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQLVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|146307004|ref|YP_001187469.1| threonyl-tRNA synthetase [Pseudomonas mendocina ymp]
 gi|166225482|sp|A4XTS1|SYT_PSEMY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145575205|gb|ABP84737.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Pseudomonas
           mendocina ymp]
          Length = 640

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 145/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRRIGKQLDLF--HLQEEAPGMVFWHPNGWTVYQVLEQYMRQVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M       ++     P +      IF   +KSY
Sbjct: 289 YVEVRTPQVVDRILWERSGHWSNYAENMFT-TASENRDYAVKPMNCPCHVQIFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +  K +        L++
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIFCTEDQVKKEA-ADFIKLTLQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E                   D    +     ++   
Sbjct: 407 YADFGFTDIAMKLSTRPAKRVGSEE-----------------LWDRAEGALADALNESGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L  N +      +              + A++  
Sbjct: 450 AWEYQPGEGAFYGPKIEF---TLRDCLGRNWQCGTLQYDPNLP--------ERLDASYIA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++    +     +P  +AP +  ++NI        D
Sbjct: 499 EDNNRKRPVMLHRAILGSFERFIGMLI---EHYAGSFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +    L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FAREAEKTLNQSGFRAKVDLRNEKIGFKIREHTLLKVPYLLVIGDREVETRSVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M LE+         S  
Sbjct: 613 VDLGSMPLEQFAAQLQQAVSRR 634


>gi|325136057|gb|EGC58667.1| threonyl-tRNA synthetase [Neisseria meningitidis M0579]
          Length = 643

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 160/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 237 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 294

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 295 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 354 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E         
Sbjct: 413 YKQFGFHDVSVKLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 463

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    ++A +  
Sbjct: 464 --------GAFYGPKIEYH---VRDALGRSWQCGTLQLD----FVLPER----LNAEYVT 504

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 505 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 558

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 559 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 617

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 618 EDLGSLDLDDFIAQLQQEITD 638


>gi|119897370|ref|YP_932583.1| threonyl-tRNA synthetase [Azoarcus sp. BH72]
 gi|166223320|sp|A1K4E1|SYT_AZOSB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119669783|emb|CAL93696.1| ThrS protein [Azoarcus sp. BH72]
          Length = 638

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 151/444 (34%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    I + + G+  W   G      V   +R   +R
Sbjct: 229 ESYLHMLEEAEKRDHRKLGRQLDLF--HIQEEAPGMVFWHAKGWTLWQQVEQYLRGTISR 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG +  Y  +++             P +      IF   +K
Sbjct: 287 HGYQEVRTPQIVDRSLWEKSGHWGMY-SDLMFTTQSEKHDYAVKPMNCPCHIQIFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F    +  + +         
Sbjct: 346 SYRDLPLRMAEFGSCHRNEPSGSLHGIMRVRNFVQDDAHIFCTDEQVQEEA-AAFIALLQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G + I ++  + P     + E                   D    +        
Sbjct: 405 KVYADFGFRDIQIKLSTRPEKRVGADE-----------------QWDAAEAALAAALKAQ 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    +     L D L    +     ++       G        A +
Sbjct: 448 GLEYELQPGEGAFYGPKIEF---SLKDCLNRVWQCGTLQLDFNLPVRLG--------AEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  K   V +    +G++     ++   + G   +W   V    +++       +  
Sbjct: 497 VAEDNTKKFPVMLHRAIVGSLERFIGILIEHYAGAMPLWLAPVHAVVMNI------SEGQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  RL + G  V  D   E+I  +     +   P Q++VG K  +   V ++ R
Sbjct: 551 ADYATEVVNRLREAGFRVEADLRNEKINYKIREHSVHKLPYQLVVGEKEKAAGVVAVRVR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  +SL+++I   +   ++ 
Sbjct: 611 GGQDLGQLSLDKLIERWNGELASR 634


>gi|94264275|ref|ZP_01288069.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
 gi|94270245|ref|ZP_01291687.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
 gi|93450880|gb|EAT01895.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
 gi|93455320|gb|EAT05527.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
          Length = 641

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 79/449 (17%), Positives = 157/449 (34%), Gaps = 40/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             +Y   + +   RD      +L L T  I  Q   G+  W P G      +    R++ 
Sbjct: 230 LKQYLAQLEEAKRRDHRKLGKELELFT--IQEQIGPGLILWQPKGALLRRLIEDYWRQQH 287

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G   +  P +   +LW  SG  D YG  M    D  D      P +      ++++ 
Sbjct: 288 YQHGYDLLYTPHIARRELWQTSGHLDFYGDNMFAGMDIEDVQYQLKPMNCPFHIALYKTR 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR  P  + ++   +R E      G+MR R F   DA+ F    +     Y ++   
Sbjct: 348 KRSYREFPLRWCELGTVYRFEKTGALHGLMRVRGFTQDDAHIFCRPEQLEDEIY-RILDF 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L +    G     +   + P                  +   S +       +     +
Sbjct: 407 NLHVLKAFGFSDYEIYLSTRP-----------------EKYVGSDEHWQQATEALKLALE 449

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 S+       Y    D+   K+ D L    + S   ++    F    ++      
Sbjct: 450 HKGLAYSVDPGEGVFYGPKIDI---KIKDVLGRAWQCSTIQVD----FNLPERF----KL 498

Query: 301 TFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G D G+   + +    +G++     V+    +     +P  +AP +  ++NI     
Sbjct: 499 GYTGEDSGEHRPIMIHRALMGSLERFFGVLI---EHYAGAFPLWLAPVQARILNIT---D 552

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+Y +L + G  V  D+  E++  +   A L   P  ++VG +  +D  + ++
Sbjct: 553 AQLDYVGKVYEQLRRAGVRVEKDERNEKLNYKIREAQLQKIPYMLVVGDQEAADGTITVR 612

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPV 448
            R       M++ +     + + + +  +
Sbjct: 613 QRDGKNLPAMTVADFAALVAGQVAESHNL 641


>gi|299535482|ref|ZP_07048804.1| threonyl-tRNA synthetase 1 [Lysinibacillus fusiformis ZC1]
 gi|298729243|gb|EFI69796.1| threonyl-tRNA synthetase 1 [Lysinibacillus fusiformis ZC1]
          Length = 643

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 172/442 (38%), Gaps = 32/442 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K+ L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++  
Sbjct: 232 KHHLQMLEEAKERDHRKIGKELELFTT-SQKVGQGLPLWLPNGATIRRVIERYIVDKELS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L S +L+  SG +D Y   +    + +++ +I  P +      ++++ + 
Sbjct: 291 LGYKHVYTPVLGSKELYQTSGHWDHYQDSIFPPMEMDNETLIMRPMNCPHHMMVYKNSMH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYRNLP    ++    R E+      ++    +  +     + P+  K  + K+    L 
Sbjct: 351 SYRNLPLRIAELGTMHRYEMSGAVSGLQRVRGMTLNDAHIFVRPDQIKAEFQKVVQLILE 410

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    L     R                  D  +T+ +   D M     S      D++
Sbjct: 411 VYKDFDLHDYSFRLS--------------YRDPADTEKYFDDDAMWEKAQSMLKEAMDEL 456

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+
Sbjct: 457 GLDYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTY 505

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DGK H   +     G +  +   +    +     +P  +AP ++ +I +   ++   
Sbjct: 506 VGEDGKPHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVEVIPV--SNEAHF 561

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  ++I  +L+  G  V  DD  E++G +   A +   P  +++G K V  + V ++   
Sbjct: 562 DYAKQIEEQLTAAGLRVEMDDREEKLGYKIREAQMKKIPYMLVIGDKEVEANGVNVRRYG 621

Query: 423 TGIREDMSLEEVINYASHRFSN 444
           +   E +S E+ ++      + 
Sbjct: 622 SKDSETISFEDFLSTIKTEITK 643


>gi|326789266|ref|YP_004307087.1| threonyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326540030|gb|ADZ81889.1| threonyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 586

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 93/440 (21%), Positives = 159/440 (36%), Gaps = 41/440 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L T  I     G   +LP G    + +    R+   R G
Sbjct: 184 YLQSIEEAKKRDHRKLGKELGLFT--ILDEGPGFPFFLPKGMVLKNLLIDYWRKLHTREG 241

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + + +LW  SG +D Y + M      +D      P +      +++    SY
Sbjct: 242 YVEISTPMMLNKELWETSGHWDHYRENMYT-TVIDDTDFAIKPMNCPGGMLVYKLQPHSY 300

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ L  R E      G+MR R F   DA+ F    + +      +      +
Sbjct: 301 RELPIRMGELGLVHRHEKSGALHGLMRVRCFTQDDAHIFMTQEQITDE-IKGVVRLIDEV 359

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G K   +   + P     S E                   +          D++  
Sbjct: 360 YSKFGFKYH-VELSTRPENSIGSDE-----------------DWNVATEGLKKALDEMQL 401

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H E   DS+    +     ++    F    ++     A + G
Sbjct: 402 EYVINEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQLPVRF----EAEYIG 450

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADGK H    +     G++     ++    +     +P  +AP ++ ++ I        +
Sbjct: 451 ADGKKHRPIMIHRVVFGSIERFIGILI---EHYAGKFPLWLAPVQVKVLPISDK---FSE 504

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               + A L K G     D+  E+IG +   A L   P  V+VG K V  + V I+ R  
Sbjct: 505 YGAFVMAELQKQGIRCEIDNRDEKIGYKIREAQLGKVPYMVVVGQKEVESNLVTIRRRDE 564

Query: 424 GIREDMSLEEVINYASHRFS 443
             +E  S++E +   ++   
Sbjct: 565 STQEGYSIQEFVQLLNNEIE 584


>gi|326562776|gb|EGE13071.1| threonyl-tRNA synthetase [Moraxella catarrhalis 46P47B1]
 gi|326563180|gb|EGE13448.1| threonyl-tRNA synthetase [Moraxella catarrhalis 12P80B1]
          Length = 639

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 149/447 (33%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L    + + + G+  W P G      +   +R+ 
Sbjct: 226 KQLKAYLQRLEEAEKRDHRKIGKALNLF--HMQEQAPGMVFWHPNGWTIWQVLEQYMRKV 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q   G +E+  P +    LW +SG +D+Y  EM+       +     P +      +F  
Sbjct: 284 QKDNGYLEIKTPQIVDRSLWEKSGHWDNY-GEMMFTTASEKRDYAIKPMNCPCHVQVFNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +    +      
Sbjct: 343 GLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTNAQIRSEA-LNFIK 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L ++   G   I M+  + P     + E                   D    +     
Sbjct: 402 LTLDVYKDFGFDHIQMKLSTRPEKRVGADE-----------------LWDLAEQALADAL 444

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D+      +     A Y    +     L D +    +     ++    F    +    + 
Sbjct: 445 DNAGLDWELQAGEGAFYGPKIEF---SLQDCIGRVWQCGTLQLD----FNLPER----LD 493

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A F G  G+      +    +G+      ++   + G    W        +++       
Sbjct: 494 AEFVGESGERERPVMLHRAILGSFERFIGILIEHYAGLFPAWLAPQQVVVMNIT------ 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D+   + ++L+  G     D   E+IG +     L   P  +I+G K V    V +
Sbjct: 548 DKQADSVGDVVSKLNAKGYRAISDLRNEKIGFKIRERTLERIPFMLILGDKEVESGTVNV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       M+L++ I          
Sbjct: 608 RTRTGDNLGSMNLDDFIAVLDKAIEKK 634


>gi|313896316|ref|ZP_07829869.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975115|gb|EFR40577.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 639

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 159/444 (35%), Gaps = 42/444 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    RE   R G
Sbjct: 233 YLHMLEEAEKRDHRKLGRELDLFS--LHEEGPGFPFFHPNGMILRNELLNYWREVHRRYG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + S  LW  SG +  Y + M      +++     P +      ++RS + SY
Sbjct: 291 YSEISTPVILSRKLWETSGHWFHYRENMYT-TQIDEEDYAIKPMNCPGCMLVYRSQLHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+ R R F   DA+   +TPE  +         +  +
Sbjct: 350 RDLPLRLAELGLVHRHELSGALHGLFRVRNFTQDDAH-LFVTPEQIEGEIQHTIDLFDEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL        + P     S E                   +          ++   
Sbjct: 409 YRTFGLSYK-AELSTRPDDSMGSDE-----------------MWELATSGLQKALENRGL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+    +     +++     F          T+ G
Sbjct: 451 DYIVNEGDGAFYGPKIDFH---LRDSIGRTWQCGTIQLDMSLPEKFD--------LTYVG 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++    +     +P  + P ++ ++ I    +   +
Sbjct: 500 EDGEKHRPVMLHRVVYGSIERFIGILI---ENFAGAFPVWMTPVQVRILPIT---ERHAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++  R+   G  V  D+  E+ G +   + +   P  ++VG +      V ++    
Sbjct: 554 YAEELRKRMFDRGIRVEVDNRNEKTGYKIRESQVKKTPYTLVVGDQEQESGTVALRKYGE 613

Query: 424 GIREDMSLEEVINYASHRFSNNRP 447
                MS ++ I +   + +   P
Sbjct: 614 KDSTVMSADDFIAFVEKKIAERSP 637


>gi|330503839|ref|YP_004380708.1| threonyl-tRNA synthetase [Pseudomonas mendocina NK-01]
 gi|328918125|gb|AEB58956.1| threonyl-tRNA synthetase [Pseudomonas mendocina NK-01]
          Length = 640

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 145/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRRIGKQLDLF--HLQEEAPGMVFWHPNGWTVYQVLEQYMRQVQREHG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M       ++     P +      IF   +KSY
Sbjct: 289 YVEVRTPQVVDRILWERSGHWSNYAENMFT-TASENRDYAVKPMNCPCHVQIFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +  K +        L++
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIFCTEDQVKKEA-ADFIRLTLQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E                   D    +     ++   
Sbjct: 407 YSDFGFTDIAMKLSTRPAKRVGSDE-----------------LWDRAEGALAEALNESGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L  N +      +              + A++  
Sbjct: 450 AWEYQPGEGAFYGPKIEF---TLRDCLGRNWQCGTLQYDPNLP--------ERLDASYIA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++    +     +P  +AP +  ++NI        D
Sbjct: 499 EDNNRKRPVMLHRAILGSFERFIGMLI---EHYAGSFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +    L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FAREAEKTLNQSGFRAKVDLRNEKIGFKIREHTLLKVPYLLVIGDREVETRSVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M +E+         S  
Sbjct: 613 VDLGSMPIEQFAAQLQQAVSRR 634


>gi|307131177|ref|YP_003883193.1| threonyl-tRNA synthetase [Dickeya dadantii 3937]
 gi|306528706|gb|ADM98636.1| threonyl-tRNA synthetase [Dickeya dadantii 3937]
          Length = 642

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 142/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S Y   + +   RD      +L L    + + + G+  W   G      + A +R +  
Sbjct: 229 LSAYLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW ++G +++Y + M       ++     P +      IF   +
Sbjct: 287 EYQYQEVKGPFMMDRVLWEKTGHWENYKEAMFT-TSSENREYCIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +      N      
Sbjct: 346 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G + I ++  + P                      S D  D           +
Sbjct: 405 YDMYSTFGFEKIVVKLSTRPEKR-----------------IGSDDMWDRAEEDLAAALTE 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y    +     L D L    +     ++    F    + S    A+
Sbjct: 448 NGIPFDYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----AS 496

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G + +    V +    +G+M     ++     G    W   V    +++         
Sbjct: 497 YVGENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQAVVMNIT------DT 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ 
Sbjct: 551 QSDYVSELTRKLQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       + + EVI        + 
Sbjct: 611 RRGKDLGSLDVSEVITKLQEEIRSR 635


>gi|296102767|ref|YP_003612913.1| threonyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295057226|gb|ADF61964.1| threonyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 642

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEDQVRDE-VNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------TWDRAEADLAVALEENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F    + S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPQRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G++     ++     G    W   V    +++           D
Sbjct: 500 EDNERQVPVMIHRAILGSLERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVKELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + EVI        + 
Sbjct: 614 KDLGSLDVSEVIEKLQQEIRSR 635


>gi|325263795|ref|ZP_08130528.1| threonine--tRNA ligase [Clostridium sp. D5]
 gi|324030833|gb|EGB92115.1| threonine--tRNA ligase [Clostridium sp. D5]
          Length = 641

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 89/444 (20%), Positives = 161/444 (36%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L   M+     G   +LP G    + +    RE  +R 
Sbjct: 229 EYLTMLEEAKKRDHRKLGKELGLF--MMRDEGPGFPFFLPKGMVLKNTLLDYWREIHSRN 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E++ P + S  LW  SG +D Y   M      +++     P +      +++S  +S
Sbjct: 287 GYVEIATPIMLSRHLWETSGHWDHYKDNMYT-TVIDEEDFAIKPMNCPGGILVYQSEPRS 345

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++ L  R E   +  G+MR R F   DA+ F +  +       K     + 
Sbjct: 346 YRDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMMPEQIRDE--IKDVARLID 403

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
             + L      +   + P     S E                   +    +     DD+ 
Sbjct: 404 EVYSLFGFKYHVELSTRPEDSMGSDE-----------------DWEMATEALRGALDDLE 446

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H E   DS+    +     ++    F    ++       + 
Sbjct: 447 LPYVVNEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQLPLRFD----LEYT 495

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG+ H    +     G++     ++     G    W   +AP ++ ++ I        
Sbjct: 496 GADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPISDK---YI 549

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +K+   L+K G     D   E+IG +   A +   P  ++VG+K   D  V ++ R 
Sbjct: 550 KYGKKVQDTLNKAGIRADIDMRAEKIGYKIREAQMQKIPYMLVVGAKEEEDRLVSVRSRF 609

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
            G     S++E I   +   +  +
Sbjct: 610 AGDEGQKSMDEFIASITSEIAGKK 633


>gi|293610405|ref|ZP_06692706.1| threonyl-tRNA synthetase [Acinetobacter sp. SH024]
 gi|292827637|gb|EFF86001.1| threonyl-tRNA synthetase [Acinetobacter sp. SH024]
 gi|325124561|gb|ADY84084.1| threonyl-tRNA synthetase [Acinetobacter calcoaceticus PHEA-2]
          Length = 640

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHPNGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG   +Y   M       ++     P +      +F   +KSY
Sbjct: 289 YLEIKTPQIVDFTLWEKSGHAANYADNMFT-THSENRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  +          L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTKEQIGQE-VADFIKLTLEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P                           D    S     D    
Sbjct: 407 YKDFGFEEVQMKLSTRPEKR-----------------VGDDALWDMAEKSLADALDAAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +      +    F    +    + A++  
Sbjct: 450 EWELQPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQCD----FNLPER----LDASYVT 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++    +      P  ++P +  ++NI        +
Sbjct: 499 EDNDRDQPVMLHRAILGSFERFIGILI---EHYAGFMPPWLSPLQACVMNITDS---QAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           ACEK+ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R  
Sbjct: 553 ACEKVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS++  I+      +  
Sbjct: 613 KNLGTMSVDAFIDLVKSAVAER 634


>gi|229591579|ref|YP_002873698.1| threonyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
 gi|259516637|sp|C3JZN7|SYT_PSEFS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229363445|emb|CAY50645.1| putative threonyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
          Length = 640

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 148/445 (33%), Gaps = 41/445 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLNLF--HLQEEAPGMVFWHPNGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M       ++     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TQSENRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        + +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEEQMQAES-AAFIKLTMDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + M+  + P     S E                   D    +     D    
Sbjct: 407 YRDFGFTEVEMKLSTRPEKRVGSDE-----------------LWDRAEAALAAALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++       G        A +  
Sbjct: 450 AYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLDFNLPIRLG--------AEYVS 498

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  + H V +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKHPVMLHRAILGSFERFVGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FAAEVEKTLNESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN-RP 447
                M + +   + +   S   RP
Sbjct: 613 ADLGSMPVAQFAEFLAQAVSRRGRP 637


>gi|332525938|ref|ZP_08402079.1| threonyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
 gi|332109489|gb|EGJ10412.1| threonyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 635

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 141/442 (31%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + +HS G   W P G      V   +R      G
Sbjct: 231 YLRMLEEAEKRDHRKLGRELDLF--HLDEHSPGTVFWHPKGWTVWQEVEQYMRRVYRDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D Y + M    +   +     P +      IF+  IKSY
Sbjct: 289 YQEVKGPQILDKALWEKTGHWDKYRENMFT-TESEKRDYALKPMNCPGHILIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F   D + F                   ++
Sbjct: 348 RDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIFCTEDMILGECVAYT-ALLQKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  +  + P                      S    D    +          
Sbjct: 407 YRDFGFTDILYKVATRPEKR-----------------IGSDAIWDKAEEALIESLKRSGC 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    +     L D++    +     ++           +  + A +  
Sbjct: 450 DYVIAPGDGAFYGPKIEY---TLKDAIGRQWQCGTMQVDFS--------MAERLDAEYVA 498

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG + H V +    +G++     ++   H G   +W   V     S+           D
Sbjct: 499 EDGSRRHPVMLHRAIVGSLERFIGILIEQHAGALPVWLAPVQAVVASIT------DSQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L K G  V  D   E+I  +     +   P  ++VG K  ++  V ++ R  
Sbjct: 553 YAAEVAKSLQKQGLRVHLDLRNEKINYKIREHSVQKAPFILVVGDKEKANGAVAVRARGN 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M L +     +   +  
Sbjct: 613 LDLGVMPLADFQQKIASDIAAK 634


>gi|302874879|ref|YP_003843512.1| threonyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|307690504|ref|ZP_07632950.1| threonyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|302577736|gb|ADL51748.1| threonyl-tRNA synthetase [Clostridium cellulovorans 743B]
          Length = 635

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 88/442 (19%), Positives = 161/442 (36%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L      + +   G   +LP G    +++    R    + G
Sbjct: 231 YLNMLEEAKKRDHRKLGKELE--LFTLLEEGPGFPFFLPKGMIVRNSLEDYWRVIHKKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S +LW +SG +D Y + M      ++K     P +       +++ + SY
Sbjct: 289 YQEIKTPIILSEELWHQSGHWDHYKENM-YFTSIDEKPFAVKPMNCPGSILAYKNALHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ L  R EL     G+MR R F   DA+ F    + +        +  +  
Sbjct: 348 RELPLRLAELGLVHRHELSGALHGLMRVRCFTQDDAHIFMTKDQITDE--LLDLIKLIDD 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F++       +   + P     S E                   +       T  D    
Sbjct: 406 FYKNFGFEYFVELSTRPENSMGSDE-----------------DWELATNGLRTALDKAGL 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H   L DS+    +     ++    F    ++       + G
Sbjct: 449 SYKINEGDGAFYGPKIDFH---LRDSIGRTWQCGTIQLD----FQLPERFD----IDYIG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++    +     +P  +AP ++ ++NI    +    
Sbjct: 498 PDGEKHRPVMVHRVVFGSIERFIGILI---EHFAGAFPAWLAPVQVKVMNITDSSKG--- 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E+I   L + G  V  D   E+IG +   A L   P  +++G K +++  + ++ R  
Sbjct: 552 YVEEIARVLEEKGIRVESDLRNEKIGYKIREAQLQKIPYMIVIGEKEMNEKTIAVRSRKD 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    MS+EE  N       + 
Sbjct: 612 GDIGTMSIEEFSNKLLEEIKSK 633


>gi|289434839|ref|YP_003464711.1| hypothetical protein lse_1474 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171083|emb|CBH27625.1| thrS [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 640

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 168/441 (38%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R G
Sbjct: 230 FIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SY
Sbjct: 289 YNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++ +  R E+      ++    +  +     + P+  K  + ++    L ++
Sbjct: 349 RELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIIS 244
               +K    R                  D   T+ +   D   D       +  D++  
Sbjct: 409 KDFDIKDYSFRLS--------------YRDPKNTEKYFDDDAMWDKAQAMLKSAMDEMGM 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                +   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G
Sbjct: 455 DYFEADGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIG 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   +     G +  +   +    +     +P  +AP ++ LI + A      D 
Sbjct: 504 EDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQMELIPVNA--DAHLDY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L + G  V  DD  E++G +   A     P  +++G + +    V ++   + 
Sbjct: 560 AKGVQDKLQRAGLRVEVDDRNEKLGYKIREAQTKKIPYALVLGDQEMESGTVNVRRYGSK 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E M L+  I+      S  
Sbjct: 620 DSETMELDTFISQVVQEVSKY 640


>gi|15615703|ref|NP_244007.1| threonyl-tRNA synthetase 1 [Bacillus halodurans C-125]
 gi|20139931|sp|Q9K866|SYT_BACHD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|10175763|dbj|BAB06860.1| threonyl-tRNA synthetase 1 [Bacillus halodurans C-125]
          Length = 645

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 79/437 (18%), Positives = 169/437 (38%), Gaps = 34/437 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L +   +  +  +G+  WLP G      +   I +++ + G 
Sbjct: 237 LRLLEEAKERDHRKLGKELGIFA-LSQKVGQGLPLWLPKGATIRRIIERYIVDKEEKLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S++L+  SG +D Y  +M    +  ++ ++  P +      ++++ ++SYR
Sbjct: 296 QHVYTPVLASSELYKTSGHWDHYKDDMFPTMEMENEELVLRPMNCPHHMMVYKTEMRSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++ L  R E+     G+ R R   + DA+ F    +        +      ++
Sbjct: 356 QLPLRIAELGLMHRYEMSGAVSGLQRVRGMTLNDAHIFCRPDQIKDEFVRVVR-LIQAVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
              GLK+   R                  D  + + +   D M            D++  
Sbjct: 415 EDFGLKNYSFRLS--------------YRDPEDKEKYFDDDNMWNKAQGMLKEAMDELEL 460

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+ G
Sbjct: 461 EYFEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFD----LTYVG 509

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   +     G +  +   +    +     +P  +AP ++ +I +    +   + 
Sbjct: 510 EDGQPHRPVVVHR--GVVSTMERFVAFLLEEYKGAFPTWLAPVQVQVIPVSP--EAHLEY 565

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +   L + G  V  D+  E+IG +   A +   P  +++G K V  + V ++     
Sbjct: 566 AKNVQETLQQAGIRVEIDERDEKIGYKIREAQMQKIPYMLVLGDKEVEANGVNVRKYGEK 625

Query: 425 IREDMSLEEVINYASHR 441
               M L+E + + +  
Sbjct: 626 DSSSMGLDEFVRHVARE 642


>gi|319410089|emb|CBY90425.1| threonyl-tRNA synthetase (threonine-tRNA ligase; ThrRS) [Neisseria
           meningitidis WUE 2594]
          Length = 637

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQVIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +++Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWENYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++    P     S +    A+ G  +   +       +P E         
Sbjct: 407 YKQFGFHDVSVKLSLRPEQRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 458 --------GAFYGPKIEYH---VRDALGRSWQCGTLQLD----FVLPER----LDAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQLVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q++VG K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|240080190|ref|ZP_04724733.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
          Length = 648

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 158/441 (35%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     + D+L  + +     ++    F    +    + A +  
Sbjct: 469 --------GAFYGPKIEYR---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 509

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 510 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 563

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 564 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 622

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 623 EDLGSLDLDDFIAQLQQEITD 643


>gi|317491930|ref|ZP_07950364.1| threonyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920051|gb|EFV41376.1| threonyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 645

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      + A +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRVKLKEYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMGEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D           +   
Sbjct: 408 YSIFGFEKIAVKLSTRPEKRIGSDE-----------------IWDRAEEDLAEALKENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    +    ++A++ G
Sbjct: 451 PFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGR----LNASYVG 499

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G+M     ++   + G    W   V    +++           D
Sbjct: 500 ENNERLVPVMIHRAILGSMERFIGILTEEYAGFYPTWLAPVQVQVMNIT------DAQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G     D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVDELTKKLQAAGIRAKSDLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KDLGTMDVNEVIEKLQKEIRSR 635


>gi|295096109|emb|CBK85199.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 622

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +   N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFC-TEDQVREEVNACIRMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------TWDRAEADLAVALEENGI 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F    + S    A++ G
Sbjct: 431 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPQRLS----ASYVG 479

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G++     ++     G    W   V    +++           D
Sbjct: 480 EDNERQVPVMIHRAILGSLERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQAD 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 534 YVKELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + EVI        + 
Sbjct: 594 KDLGSLDVSEVIEKLQQEIRSR 615


>gi|256822932|ref|YP_003146895.1| threonyl-tRNA synthetase [Kangiella koreensis DSM 16069]
 gi|256796471|gb|ACV27127.1| threonyl-tRNA synthetase [Kangiella koreensis DSM 16069]
          Length = 639

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 149/444 (33%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD    +  L L    I + + G+  W   G      +   IRE    
Sbjct: 229 KAYLHRLEEAEKRDHRKIAKALDLF--HIQEEAPGMIFWHDKGWTIYKTLEQYIRERLKE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW +SG +D +G +M  L   +++     P +      IF   +K
Sbjct: 287 HDYQEVKTPQMVDRSLWEKSGHWDKFGDDMFTLK-SDERDYAIKPMNCPCHVQIFNVGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T +  +   +K      
Sbjct: 346 SYRDLPLRMAEFGSCHRNEPSGALHGIMRLRNFVQDDAHIFC-TEDQIQEEVSKFIAMLY 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   + ++  + P                      +    D    +        
Sbjct: 405 DVYADFGFTDVIVKLSTRPEQR-----------------VGTDQEWDKAEAALADALKAN 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    +     L D L  + +     ++                A +
Sbjct: 448 SIQFEYQPGEGAFYGPKLEF---TLKDCLERHWQCGTIQVDFSMPGRLD--------AEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               G+      +    +G++     ++    +     +P  +AP +  ++NI       
Sbjct: 497 VAESGERETPVMLHRAILGSLERFIGILI---EEFAGKFPAWLAPTQAVVMNITDK---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C+K+   L   G  V  D   E+IG +     L   P  ++VG + V ++ V ++ R
Sbjct: 551 ADFCQKVVESLKNKGFRVNSDLRNEKIGFKIREQTLARVPFLLVVGDREVENNHVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS+E          +  
Sbjct: 611 DGEDLGSMSIEAFAELLEAEVTKR 634


>gi|326574765|gb|EGE24699.1| threonyl-tRNA synthetase [Moraxella catarrhalis O35E]
          Length = 639

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 151/447 (33%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L    + + + G+  W P G      +   +R+ 
Sbjct: 226 KQLKAYLQRLEEAEKRDHRKIGKALNLF--HMQEQAPGMVFWHPNGWTIWQVLEQYMRKV 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q   G +E+  P +    LW +SG +D+Y  EM+       +     P +      +F  
Sbjct: 284 QKDNGYLEIKTPQIVDRSLWEKSGHWDNY-GEMMFTTASEKRDYAIKPMNCPCHVQVFNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +  + +      
Sbjct: 343 GLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTNAQIRQEA-LNFIK 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L ++   G   I M+  + P     + E                   D    +     
Sbjct: 402 LTLDVYKDFGFDHIQMKLSTRPEKRVGADE-----------------LWDLAEQALADAL 444

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D+      +     A Y    +     L D +    +     ++    F    +    ++
Sbjct: 445 DNAGLDWELQAGEGAFYGPKIEF---SLQDCIGRVWQCGTLQLD----FNLPER----LN 493

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A F G  G+      +    +G+      ++   + G    W        +++       
Sbjct: 494 AEFVGESGERERPVMLHRAILGSFERFIGILIEHYAGLFPTWLAPQQVVVMNIT------ 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D+   + ++L+  G     D   E+IG +     L   P  +I+G K V    V +
Sbjct: 548 DKQADSVGDVVSKLNAKGYRAISDLRNEKIGFKIRERTLERIPFMLILGDKEVESGTVNV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       M+L++ I          
Sbjct: 608 RTRTGDNLGSMNLDDFIKILDGAIEKK 634


>gi|294636227|ref|ZP_06714641.1| threonine--tRNA ligase [Edwardsiella tarda ATCC 23685]
 gi|291090484|gb|EFE23045.1| threonine--tRNA ligase [Edwardsiella tarda ATCC 23685]
          Length = 622

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      + A +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLKAYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M       ++     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWENYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNSCIKMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------IWDRAEEDLAAALEENGI 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    +    ++A++ G
Sbjct: 431 PFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGR----LNASYVG 479

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 480 ENNERVVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQAVVMNIT------DSQAE 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++  +L   G     D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 534 YVEELNKKLQAAGIRAKSDLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+++VI        + 
Sbjct: 594 KDLGVMSIDDVIEKLLQEIRSR 615


>gi|50086067|ref|YP_047577.1| threonyl-tRNA synthetase [Acinetobacter sp. ADP1]
 gi|73919764|sp|Q6F860|SYT_ACIAD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49532043|emb|CAG69755.1| threonyl-tRNA synthetase [Acinetobacter sp. ADP1]
          Length = 640

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQALEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG   +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEVRTPQIVDFTLWEKSGHAANYAENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   D + F    +  K          L +
Sbjct: 348 RDLPVRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDGHIFCTKEQIGKE-VADFIQLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P                           D    S     D    
Sbjct: 407 YKDFGFEDVQMKLSTRPEKR-----------------VGDDRLWDLAEKSLADALDAAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +      +                A+F  
Sbjct: 450 EWELQPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQCDFNLPIRLD--------ASFVT 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +      +    +G+      ++    +      P  +AP +  ++NI        +
Sbjct: 499 EDNERDQPVMLHRAILGSFERFIGILI---EHYAGFMPPWLAPVQACVMNITDS---QAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           AC+++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R  
Sbjct: 553 ACQQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS++  ++      +  
Sbjct: 613 KNLGTMSIDAFVDLVKSAVAER 634


>gi|326571308|gb|EGE21325.1| threonyl-tRNA synthetase [Moraxella catarrhalis BC8]
          Length = 639

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 151/447 (33%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L    + + + G+  W P G      +   +R+ 
Sbjct: 226 KQLKAYLQRLEEAEKRDHRKIGKALNLF--HMQEQAPGMVFWHPNGWTIWQVLEQYMRKV 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q   G +E+  P +    LW +SG +D+Y  EM+       +     P +      +F  
Sbjct: 284 QKDNGYLEIKTPQIVDRSLWEKSGHWDNY-GEMMFTTASEKRDYAIKPMNCPCHVQVFNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +  + +      
Sbjct: 343 GLKSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTNAQIRQEA-LNFIK 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L ++   G   I M+  + P     + E                   D    +     
Sbjct: 402 LTLDVYKDFGFDHIQMKLSTRPEKRVGADE-----------------LWDLAEQALADAL 444

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D+      +     A Y    +     L D +    +     ++    F    +    ++
Sbjct: 445 DNAGLDWELQAGEGAFYGPKIEF---SLQDCIGRVWQCGTLQLD----FNLPER----LN 493

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A F G  G+      +    +G+      ++   + G    W        +++       
Sbjct: 494 AEFVGESGERERPVMLHRAILGSFERFIGILIEHYAGLFPTWLAPQQVVVMNIT------ 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D+   + ++L+  G     D   E+IG +     L   P  +I+G K V    V +
Sbjct: 548 DKQADSVGDVVSKLNAKGYRAISDLRNEKIGFKIRERTLERIPFMLILGDKEVESGTVNV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       M+L++ I          
Sbjct: 608 RTRTGDNLGSMNLDDFIKILDGAIEKK 634


>gi|194289383|ref|YP_002005290.1| threonyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|238692758|sp|B3R4J1|SYT_CUPTR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|193223218|emb|CAQ69223.1| threonine tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 635

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 147/444 (33%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD       L L    + + + G+  W P G +    V   +R     
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKTLDLF--HLQEEAPGMVFWHPKGWQVWQAVEQYMRGRLTD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG + +Y + M  + +   +     P +      IF   ++
Sbjct: 287 AGYDEVRTPQVMDRSLWEKSGHWQNYKENMF-VTESEKRDYAIKPMNCPGHVQIFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F    +    +         
Sbjct: 346 SYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIFCTEEQIVAEA-KAFNELAF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G K + ++    P     S E    A+ G      +       +P E       
Sbjct: 405 SVYDDFGFKDVKVKLSLRPDQRAGSDEIWDHAEEGLRLALRACGVEWEELPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   + D++  + +     +++      G        A +
Sbjct: 458 ----------GAFYGPKVEYH---IKDAIGRSWQCGTLQLDLVLPERLG--------AEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G+      ++  +H G    W        +++          
Sbjct: 497 VSEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPAWLAPDQVVVMNIA------DSQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E +   L K G     D   E+I  +     L   P  ++VG K    ++V ++ R
Sbjct: 551 AEYAESVVQLLQKQGFRAKADLRNEKITYKIREHSLQKVPYLLVVGDKERDANQVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M +   +    H  ++ 
Sbjct: 611 GNVDLGVMPVSAFVERLQHDVASK 634


>gi|242239483|ref|YP_002987664.1| threonyl-tRNA synthetase [Dickeya dadantii Ech703]
 gi|242131540|gb|ACS85842.1| threonyl-tRNA synthetase [Dickeya dadantii Ech703]
          Length = 642

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 144/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S Y   + +   RD      +L L    + + + G+  W   G      + A +R +  
Sbjct: 229 LSAYLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW ++G +++Y + M       ++     P +      IF   +
Sbjct: 287 EYQYQEVKGPFMMDRVLWEKTGHWENYKEAMFT-TSSENREYCIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +      N      
Sbjct: 346 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVRTE-VNSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G + I ++  + P     S E                   D           +
Sbjct: 405 YDMYGTFGFEKIAVKLSTRPEKRIGSDE-----------------MWDRAEEDLAAALTE 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y    +     L D L    +     ++    F    +    ++A+
Sbjct: 448 NGIPFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGR----LNAS 496

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G + +    V +    +G+M     ++     G    W   V    +++         
Sbjct: 497 YVGENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ 
Sbjct: 551 QSDYVSELTRKLQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       + + EVIN       + 
Sbjct: 611 RRGKDLGSIDVSEVINKLQEEIRSR 635


>gi|71908290|ref|YP_285877.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Dechloromonas
           aromatica RCB]
 gi|123733181|sp|Q47CM4|SYT_DECAR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71847911|gb|AAZ47407.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Dechloromonas
           aromatica RCB]
          Length = 638

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 145/442 (32%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +  L    +   + G+  W P G      +   +R      G
Sbjct: 231 YLHMLEEAEKRDHRRLGKQYDLF--HMQDEAPGLVFWHPKGWAIWQEIEGYMRAVYRNNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG ++ Y   M       ++     P +      +F + ++SY
Sbjct: 289 YQEVRCPQILDKSLWEKSGHWEHYKDNMFT-TSSENRDYAVKPMNCPGHVQVFNAGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + +     R+E      G+MR R F+  D + F  T +  +           ++
Sbjct: 348 RELPLRYGEFGSCHRNEPAGALHGLMRVRGFVQDDGHIFC-TEDQIESEVTAFNALVKKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++    P                      + D  D    +          
Sbjct: 407 YADFGFNDVAVKLALRPDSR-----------------VGADDVWDRAEDALRQGLRASGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             + +    A Y    + H   + D++  + +     ++       G        A + G
Sbjct: 450 EWTELPGEGAFYGPKIEFH---IRDAIGRSWQCGTMQVDFSMPGRLG--------AEYVG 498

Query: 305 -ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             D +   V +    +G++     ++  +  G   +W   V    +++       +   D
Sbjct: 499 ADDTRKVPVMLHRAILGSLERFIGILIENFAGALPLWLAPVQVVVLNI------SEKQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G     D   E+I  +     L   P Q++VG K  +D  V ++ R  
Sbjct: 553 YAAEVAQKLHSAGFRAEADLRNEKITYKIREHSLNRLPYQLVVGDKEKADGLVAVRTRGG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M ++ +I          
Sbjct: 613 QDLGQMPVDVLIKRLQEEVVAR 634


>gi|289548737|ref|YP_003473725.1| threonyl-tRNA synthetase [Thermocrinis albus DSM 14484]
 gi|289182354|gb|ADC89598.1| threonyl-tRNA synthetase [Thermocrinis albus DSM 14484]
          Length = 645

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 161/442 (36%), Gaps = 39/442 (8%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           L   +E  R D      +L +   MI +    G+  WLP G      +    REE  + G
Sbjct: 233 LRFYEEVKRRDHRKLGKELEMF--MIDEEIGAGLVIWLPKGGIYRKVLEDYWREEHLKRG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + +A LW +SG  D Y + M    +  D+     P +      I++S ++SY
Sbjct: 291 YQLVYTPHIGNAKLWQKSGHLDHYRQNMFPPMELEDEEYFVKPMNCPFHIAIYKSKVRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LPF   ++   +R E+     G+MR R F   DA+     P+       +     + +
Sbjct: 351 RDLPFRLAELGTVYRYEMSGVLHGLMRVRGFTQDDAHIICR-PDQVDDVIQETLDFAISM 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G                   EF V   T       S +  +    +     + +  
Sbjct: 410 LRDFGFD-----------------EFKVYISTKPEDAIGSDEQWEKAESALKKAVESMGL 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    DV   K+ D+L    + S    +    F    ++ +        
Sbjct: 453 EYEIDEGGGAFYGPKIDV---KIRDALGRLWQCSTIQFD----FNLPERFDMEY---VGP 502

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +     +    +G++     V+   H G    W   V    + +       +   + 
Sbjct: 503 DNRRHRPYMIHRAILGSIERFTGVLLEHHAGLLPFWLAPVQVRVLPVQ------ERHVEY 556

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +   L + G  V  D+  E++G++   A+L   P  +IVG K + D  V ++ +  G
Sbjct: 557 ARSVANTLREEGFRVEVDERDERLGAKIRDAELQKIPYVLIVGDKEMQDGSVSVRGKREG 616

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               MSL++++++     +  +
Sbjct: 617 DLGKMSLQDLLSFLRSANTKRQ 638


>gi|16800662|ref|NP_470930.1| threonyl-tRNA synthetase [Listeria innocua Clip11262]
 gi|22654125|sp|Q92BF5|SYT_LISIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|16414081|emb|CAC96825.1| threonyl-tRNA synthetase [Listeria innocua Clip11262]
 gi|313618753|gb|EFR90658.1| threonyl-tRNA synthetase [Listeria innocua FSL S4-378]
          Length = 640

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 166/441 (37%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L    I +  +G+  WLP G      +   I +++ R G
Sbjct: 230 FIQMQKEAKERDHRKLGKELDLFANSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SY
Sbjct: 289 YNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++ +  R E+      ++    +  +     + P+  K  + ++    L ++
Sbjct: 349 RELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
               +K    R                  D   T+ +   D M     +   +  D++  
Sbjct: 409 KDFDIKDYSFRLS--------------YRDPKNTEKYFDDDAMWEKAQAMLKSAMDEMNM 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G
Sbjct: 455 DYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIG 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   +     G +  +   +    +     +P  +AP ++ LI + A      D 
Sbjct: 504 EDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQMELIPVNA--DAHLDY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L + G     DD  E++G +   A     P  +++G + V    V ++   + 
Sbjct: 560 AKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRYGSK 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E M L+  I       S  
Sbjct: 620 DSETMDLDAFIAQVVAEVSKY 640


>gi|317471544|ref|ZP_07930893.1| threonyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
 gi|316900979|gb|EFV22944.1| threonyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
          Length = 539

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 91/442 (20%), Positives = 158/442 (35%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M+     G   +LP G    + +    RE  N+ G
Sbjct: 126 YLTMMEEAKKRDHRKLGKELGLF--MMRDEGPGFPFFLPNGMVLKNTLLDYWREIHNKAG 183

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + S  LW  SG +D Y + M      +++     P +      +++S  +SY
Sbjct: 184 YVEISSPIMLSRHLWETSGHWDHYQENMYT-TVIDEEDFAIKPMNCPGGVLVYQSEPRSY 242

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E   +  G+MR R F   DA+ F +  +                
Sbjct: 243 RDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMMPEQIKDEI----------- 291

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     + A    +      ++ V   T       S +  +    S  +  DD+  
Sbjct: 292 --------KGVAALIDQVYSLFGFKYHVELSTRPEDSMGSDEDWEMATDSLRSALDDLGL 343

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H E   DS+    +     ++    F    ++ L     + G
Sbjct: 344 DYVVNEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQLPLRFDLH----YTG 392

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++     G    W   +AP ++ +I I        +
Sbjct: 393 ADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVKVIPISDKH---LE 446

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L   G     D   E++G +   A L   P  ++VG K   +  V ++ R  
Sbjct: 447 YGTKVLDALKAAGIRAEIDTRAEKMGYKIREAQLHKIPYMLVVGGKEEENQAVSVRSRFK 506

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    MSL++ I          
Sbjct: 507 GDEGQMSLDDFICAIRKEIETK 528


>gi|299822779|ref|ZP_07054665.1| threonine--tRNA ligase [Listeria grayi DSM 20601]
 gi|299816308|gb|EFI83546.1| threonine--tRNA ligase [Listeria grayi DSM 20601]
          Length = 640

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 165/442 (37%), Gaps = 32/442 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K FL + +E   RD      +L L   +  +  +G+  WLP G      +   I + + R
Sbjct: 228 KAFLKMQEEAKERDHRKLGKELGLFA-ISQEVGQGLPLWLPKGATIRRVIERYIVDREER 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +   D + +SG +D Y ++M      +++ ++  P +      ++++ I 
Sbjct: 287 LGYSHVYTPIMAKVDFYKQSGHWDHYHEDMFPPMKMDNEELVLRPMNCPHHMMVYKNDIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ L  R E+      ++    +  +     + P+  K  + ++    L 
Sbjct: 347 SYRELPIRIAELGLMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVLELILA 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDI 242
           ++    +     R                  D   T+ +   D   +          D++
Sbjct: 407 VYKDFDITDYKFRLS--------------YRDPENTEKYFDDDAMWEKAQTMLKDAMDEM 452

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+
Sbjct: 453 EMDYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTY 501

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG+ H   +     G +  +   +    +     +P  +AP ++ +I +        
Sbjct: 502 IGEDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPIQMQIIPVNR--DAHF 557

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +++  +L + G  V  DD  E++G +   A     P  ++VG +   +  V I+   
Sbjct: 558 DYAKEVEDKLVRAGLRVEIDDRNEKLGYKIREAQTQKIPYALVVGDQESENGTVNIRRYG 617

Query: 423 TGIREDMSLEEVINYASHRFSN 444
           +   E +S+++ I       + 
Sbjct: 618 SKDSETLSVDDFIKQVVAEVNK 639


>gi|289422357|ref|ZP_06424203.1| threonine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
 gi|289157192|gb|EFD05811.1| threonine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
          Length = 641

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 159/444 (35%), Gaps = 42/444 (9%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L   MI +   G   +LP G     ++     E    
Sbjct: 229 EAYLKMLEEAKKRDHRKIGKELGLF--MIPEEGPGFPLFLPRGTALKQSLMKYWEEIHRE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +E+  P + +  LW  SG +  Y + M  +   +++     P +       ++S + 
Sbjct: 287 AHYVEIETPIILNRKLWETSGHWFHYKENMYTVQ-IDEEDYAIKPMNCPGAMLYYKSQLH 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+ P    +     R EL     G+MR R F   DA+ F L  +        +     
Sbjct: 346 SYRDFPMRVGERGRVHRHELSGALHGLMRVRAFTQDDAHIFMLPEQIRDE-IKGVVNLID 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++ + G     +   + P     + E   +A+ G                      +++
Sbjct: 405 KVYTKFGFSY-HVELSTRPEDSMGTDEEWAIAEDG-----------------LRGALEEL 446

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                + E   A Y    D H           +    R  + G I     +      AT+
Sbjct: 447 GMDYIVNEGDGAFYGPKIDFHL----------RDCIGRTWQCGTI-QLDMQLPQRFDATY 495

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H    +    +G++     ++  ++ GK  +W           + + +     
Sbjct: 496 VGKDGEKHRPIMIHRVALGSIERFIGILIENYAGKFPVW------LAPCQVKVLSVSDKY 549

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +++  +L   G  V  DD  E++G +   A L   P  ++VG K +    + ++ R
Sbjct: 550 NEFAKELVEKLFDAGIRVELDDRAEKVGFKIREAQLEKIPYMLVVGEKEMESGLLSVRSR 609

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    MS++E +     +  + 
Sbjct: 610 DEGELGQMSIDEFLAKIKKQIEDR 633


>gi|330829614|ref|YP_004392566.1| Threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Aeromonas
           veronii B565]
 gi|328804750|gb|AEB49949.1| Threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Aeromonas
           veronii B565]
          Length = 642

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 150/447 (33%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD      +L L    + + + G+  W   G      +   IR +
Sbjct: 227 KQLKAYLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFIRGK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW  SG ++ Y + M       ++     P +      IF  
Sbjct: 285 LKEYDYQEVKGPFMMDRVLWERSGHWEKYAQAMFT-TQSENREYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +  +     + +
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIMEEVSGCIRM 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            Y       G ++I ++  + P     S E                   D    +     
Sbjct: 404 VYDVYGT-FGFENIVVKLSTRPEQRIGSDE-----------------MWDRAEKALAEAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +       +     A Y    +     L D L    +     ++       G        
Sbjct: 446 ELNGLKYDLQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFALPGRLG-------- 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+ G +   H  V +    +G++     ++    +    ++P  +AP +  ++NI  + 
Sbjct: 495 ATYVGENNDRHVPVMIHRAILGSIERFIGILT---EEYAGLFPTWLAPTQAVVMNITDN- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   K+   L+  G     D   E+IG +     L   P  ++ G K V   K+ +
Sbjct: 551 --QADYAVKVAKALNDAGLRAKADLRNEKIGFKIREHTLKRVPFMLVCGDKEVEAGKIAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R         +EE I   +      
Sbjct: 609 RTRKGADLGTYPVEEFIALLTQEVQTR 635


>gi|268596339|ref|ZP_06130506.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|268550127|gb|EEZ45146.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
          Length = 638

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 158/441 (35%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 232 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 290 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 349 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 408 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     + D+L  + +     ++    F    +    + A +  
Sbjct: 459 --------GAFYGPKIEYR---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 499

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 500 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L   G     D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 554 YCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 612

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 613 EDLGSLDLDDFIAQLQQEITD 633


>gi|46907789|ref|YP_014178.1| threonyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093096|ref|ZP_00230873.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|217964294|ref|YP_002349972.1| threonyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|226224160|ref|YP_002758267.1| threonyl-tRNA synthetase [Listeria monocytogenes Clip81459]
 gi|254824382|ref|ZP_05229383.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|254852182|ref|ZP_05241530.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|254931499|ref|ZP_05264858.1| threonyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|255520160|ref|ZP_05387397.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-175]
 gi|290893960|ref|ZP_06556936.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
 gi|300764775|ref|ZP_07074765.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|67461796|sp|Q71ZA9|SYT_LISMF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783526|sp|B8DHI9|SYT_LISMH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516560|sp|C1KVK6|SYT_LISMC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|46881058|gb|AAT04355.1| threonyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018536|gb|EAL09292.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|217333564|gb|ACK39358.1| threonyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|225876622|emb|CAS05331.1| threonyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258605487|gb|EEW18095.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|290556498|gb|EFD90036.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
 gi|293583051|gb|EFF95083.1| threonyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|293593617|gb|EFG01378.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|300514451|gb|EFK41508.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|307571140|emb|CAR84319.1| thrS [Listeria monocytogenes L99]
 gi|313608610|gb|EFR84472.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL F2-208]
 gi|328465594|gb|EGF36823.1| threonyl-tRNA synthetase [Listeria monocytogenes 1816]
 gi|332312001|gb|EGJ25096.1| Threonyl-tRNA synthetase [Listeria monocytogenes str. Scott A]
          Length = 640

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 166/441 (37%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L    I +  +G+  WLP G      +   I +++ R G
Sbjct: 230 FIQMQKEAKERDHRKLGKELDLFANSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SY
Sbjct: 289 YNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++ +  R E+      ++    +  +     + P+  K  + ++    L ++
Sbjct: 349 RELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
               +K    R                  D   T+ +   D M     +   +  D++  
Sbjct: 409 KDFDIKDYSFRLS--------------YRDPKNTEKYFDDDAMWEKAQAMLKSAMDEMEM 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G
Sbjct: 455 DYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIG 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   +     G +  +   +    +     +P  +AP ++ LI + A      D 
Sbjct: 504 EDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQMELIPVNA--DAHLDY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L + G     DD  E++G +   A     P  +++G + V    V ++   + 
Sbjct: 560 AKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRYGSK 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E M L+  I       S  
Sbjct: 620 DSETMDLDAFIAQVVAEVSKY 640


>gi|254831960|ref|ZP_05236615.1| threonyl-tRNA synthetase [Listeria monocytogenes 10403S]
          Length = 640

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 166/441 (37%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L    I +  +G+  WLP G      +   I +++ R G
Sbjct: 230 FIQMQKEAKERDHRKLGKELDLFANSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SY
Sbjct: 289 YNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++ +  R E+      ++    +  +     + P+  K  + ++    L ++
Sbjct: 349 RELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
               +K    R                  D   T+ +   D M     +   +  D++  
Sbjct: 409 KDFDIKDYSFRLS--------------YRDPKNTEKYFDDDAMWEKAQAMLKSAMDEMEM 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G
Sbjct: 455 DYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIG 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   +     G +  +   +    +     +P  +AP ++ +I + A      D 
Sbjct: 504 EDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQMEIIPVNA--DAHLDY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L + G     DD  E++G +   A     P  +++G + V    V ++   + 
Sbjct: 560 AKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRYGSK 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E M L+  I       S  
Sbjct: 620 DSETMDLDAFIAQVVAEVSKY 640


>gi|271500480|ref|YP_003333505.1| threonyl-tRNA synthetase [Dickeya dadantii Ech586]
 gi|270344035|gb|ACZ76800.1| threonyl-tRNA synthetase [Dickeya dadantii Ech586]
          Length = 642

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 142/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S Y   + +   RD      +L L    + + + G+  W   G      + A +R +  
Sbjct: 229 LSAYLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW ++G +++Y + M       ++     P +      IF   +
Sbjct: 287 EYQYQEVKGPFMMDRVLWEKTGHWENYKEAMFT-TSSENREYCVKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +      N      
Sbjct: 346 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G + I ++  + P                      S D  D           +
Sbjct: 405 YDMYSTFGFEKIVVKLSTRPEKR-----------------IGSDDMWDRAEEDLAAALTE 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y    +     L D L    +     ++    F    + S    A+
Sbjct: 448 NAIPFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----AS 496

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G + +    V +    +G+M     ++     G    W   V    +++         
Sbjct: 497 YVGENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ 
Sbjct: 551 QSDYVSELTRKLQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       M + EVI        + 
Sbjct: 611 RRGKDLGSMDVSEVITKLQEEIRSR 635


>gi|114319929|ref|YP_741612.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122312208|sp|Q0AAL5|SYT_ALHEH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114226323|gb|ABI56122.1| Ser-tRNA(Thr) hydrolase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 641

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 150/445 (33%), Gaps = 41/445 (9%)

Query: 2   RRSKYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L +   RD         L    + + + G+  W P G +    V   IR  
Sbjct: 226 KQLKAYLHRLAEAEKRDHRRIGRAQNLF--HLQEEAPGMAFWHPKGWQIYLEVQEYIRRL 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P L    LW +SG +D +   M  + +   +     P +      ++  
Sbjct: 284 TRGHGYQEIHTPQLVDRSLWEKSGHWDKFQDNMF-ITESESRDYAVKPMNCPCHVQVYNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F+  DA+ F  T +  +        
Sbjct: 343 GLKSYRDLPLRLAEFGSCHRNEPSGTLHGLMRVRNFVQDDAHIFC-TEDQIQQEVADFID 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              + ++  G   + +   + P                  +        D    +     
Sbjct: 402 LVFKAYNDFGFDDVIIALSTRP-----------------DERVGEDALWDKAEHALEEAL 444

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +       +     A Y    +     L D L    ++    ++       G        
Sbjct: 445 NRAGLEWQLQPGEGAFYGPKIEF---TLKDCLGRTWQLGTIQVDFSMPGRLG-------- 493

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+   DG     V +    +G++     ++    +      P  +AP +  ++NI    
Sbjct: 494 ATYVAEDGSKKVPVMLHRAILGSLERFIGILI---EHYAGALPPWLAPVQAVVLNITDR- 549

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +   +I  R  + G  V  D   E+IG +     L   P  ++VG K V ++ V +
Sbjct: 550 --QGEYARRIEKRFRERGLRVDADLRNEKIGFKIREHTLQKVPYMLVVGDKEVENNTVAV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R       M++++ +       +
Sbjct: 608 RTREGQDLGSMAVDDFLQRLESEIA 632


>gi|315303326|ref|ZP_07873955.1| threonyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
 gi|313628306|gb|EFR96810.1| threonyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
          Length = 640

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 166/441 (37%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R G
Sbjct: 230 FIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SY
Sbjct: 289 YNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++ L  R E+      ++    +  +     + P+  K  + ++    L ++
Sbjct: 349 RELPIRIAELGLMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIIS 244
               +     R                  D   T+ +   D   D       +  D++  
Sbjct: 409 KDFDITDYSFRLS--------------YRDPKNTEKYFDDDAMWDKAQTMLKSAMDEMGM 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                +   A Y    DV   ++  ++ + + +S   ++    F    ++      T+  
Sbjct: 455 DYFEADGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIA 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   +     G +  +   +    +     +P  +AP ++ LI + A      D 
Sbjct: 504 EDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQMELIPVNA--DAHLDY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L + G  V  DD  E++G +   A     P  +++G + +    V ++   + 
Sbjct: 560 AKGVQDKLQRAGLRVEVDDRNEKLGYKIREAQTKKIPYALVLGDQEMESGTVNVRRYGSK 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E M L++ I       S  
Sbjct: 620 DSETMDLDKFIAQVVAEVSKY 640


>gi|262374878|ref|ZP_06068112.1| threonyl-tRNA synthetase [Acinetobacter lwoffii SH145]
 gi|262309891|gb|EEY91020.1| threonyl-tRNA synthetase [Acinetobacter lwoffii SH145]
          Length = 640

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 142/439 (32%), Gaps = 40/439 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD       L L    + + + G+  W P G      +   +R+ Q   G  E
Sbjct: 234 RIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHPNGWTIYQVLEQYMRKVQQDNGYEE 291

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +    LW +SG   +Y   M       ++     P +      +F   +KSYR+L
Sbjct: 292 IRTPQVVDFTLWEKSGHAANYADNMFT-THSENRNYAVKPMNCPCHVQVFNQGLKSYRDL 350

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +     R+E      G+MR R F   DA+ F    +             L ++  
Sbjct: 351 PVRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTKEQIGPE-VADFIKLTLDVYKD 409

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G + + M+  + P                           D    S     D       
Sbjct: 410 FGFEEVQMKLSTRPEKR-----------------VGDDKLWDMAEKSLADALDAAGLEWE 452

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           +     A Y    +     L D L    +      +    F    +    + A++   D 
Sbjct: 453 LQPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQCD----FNLPER----LDASYVTEDN 501

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                  +    +G+      ++    +      P  +AP +  ++NI        +ACE
Sbjct: 502 DRDQPVMLHRAILGSFERFIGILI---EHYAGFMPPWLAPMQACVMNITDS---QAEACE 555

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R     
Sbjct: 556 SVVAKLKENGIRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGTNL 615

Query: 427 EDMSLEEVINYASHRFSNN 445
             MS++  ++      +  
Sbjct: 616 GTMSIDAFVDLVKAAVAER 634


>gi|313623625|gb|EFR93788.1| threonyl-tRNA synthetase [Listeria innocua FSL J1-023]
          Length = 640

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 166/441 (37%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L    I +  +G+  WLP G      +   I +++ R G
Sbjct: 230 FIQMQKEAKERDHRKLGKELDLFANSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SY
Sbjct: 289 YNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++ +  R E+      ++    +  +     + P+  K  + ++    L ++
Sbjct: 349 RELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
               +K    R                  D   T+ +   D M     +   +  D++  
Sbjct: 409 KDFDIKDYSFRLS--------------YRDPKNTEKYFDDDAMWEKAQAMLKSAMDEMHM 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G
Sbjct: 455 DYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIG 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   +     G +  +   +    +     +P  +AP ++ LI + A      D 
Sbjct: 504 EDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQMELIPVNA--DAHLDY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L + G     DD  E++G +   A     P  +++G + V    V ++   + 
Sbjct: 560 AKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRYGSK 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E M L+  I       S  
Sbjct: 620 DSETMDLDAFIAQVVAEVSKY 640


>gi|104781106|ref|YP_607604.1| threonyl-tRNA synthetase [Pseudomonas entomophila L48]
 gi|123079219|sp|Q1IC15|SYT_PSEE4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|95110093|emb|CAK14798.1| threonyl-tRNA synthetase [Pseudomonas entomophila L48]
          Length = 640

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKQLDLF--HLQEEAPGMVFWHANGWTVYQVLEQYMRQVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG + +Y + M       ++     P +      +F   +KSY
Sbjct: 289 YQEIKTPQVVDRILWERSGHWSNYAENMFT-TSSENRDYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +  K +        L +
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIFCTEDQVKKEA-ADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + M+  + P     S E                   D    +     ++   
Sbjct: 407 YKDFGFTDVAMKLSTRPAKRVGSEE-----------------LWDRAEGALADALNESGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L  N +      +              + A++  
Sbjct: 450 EWEYQPGEGAFYGPKIEF---TLRDCLGRNWQCGTLQYDPNLP--------ERLDASYIA 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D      V +    +G+      ++    +    ++P  +AP +  ++NI        D
Sbjct: 499 EDNSRVRPVMLHRAILGSFERFIGMLI---EHYAGVFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L+  G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKALNGSGFRAKSDLRNEKIGFKIREHTLLRVPYLLVIGDREVETQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +     S   S  
Sbjct: 613 ADLGSMPVAQFAELLSQAVSRR 634


>gi|156934293|ref|YP_001438208.1| hypothetical protein ESA_02124 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532547|gb|ABU77373.1| hypothetical protein ESA_02124 [Cronobacter sakazakii ATCC BAA-894]
          Length = 453

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 43  YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 100

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 101 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 159

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 160 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIRMVYDM 218

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + E                   D          ++   
Sbjct: 219 YSTFGFEKIVVKLSTRPEKRIGTDE-----------------MWDRAEADLAVALEENNI 261

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 262 PFEYQPGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 310

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 311 ENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSE 364

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 365 YVNELTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 424

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + +VI        + 
Sbjct: 425 KDLGSLDVNDVIEKLQQEIRSR 446


>gi|154495989|ref|ZP_02034685.1| hypothetical protein BACCAP_00272 [Bacteroides capillosus ATCC
           29799]
 gi|150274872|gb|EDN01928.1| hypothetical protein BACCAP_00272 [Bacteroides capillosus ATCC
           29799]
          Length = 586

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 93/442 (21%), Positives = 157/442 (35%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L T M      G   +LP G    + +    R+   + G
Sbjct: 181 YLQRIEEAKKRDHRKLGKELGLFTLM--DEGPGFPFFLPNGMVLRNTLIDYWRQIHKKYG 238

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + +  LW  SG +D Y   M      + +     P +      ++++   SY
Sbjct: 239 YVEISTPMMLNRQLWERSGHWDHYKNNMYT-TVIDGEDFAIKPMNCPGGMLVYKTEPHSY 297

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+ R R F   DA+ F    +       +  V     
Sbjct: 298 RDLPLRVGELGLVHRHELSGALHGLFRVRCFTQDDAHVFMTREQMKD--VIQETVRLFDE 355

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +     +  +   + P     + E                   +           D+  
Sbjct: 356 VYSTFGLNYTIELSTMPEDHIGTVE-----------------EWERNQDILKNAITDMGK 398

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H   L DSL        R  + G I    ++        + G
Sbjct: 399 EFVINEGDGAFYGPKLDFH---LADSLG-------RTWQCGTI-QLDSQLPERFELEYTG 447

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +    +G++     VI    +     +P  ++P ++S++ I         
Sbjct: 448 ADGEKHRPVMIHRVVLGSIERFIGVIT---EHFAGAFPAWLSPVQVSILPITDRTA---Q 501

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++ A L K G  V  D   E+IG +   A L   P  +++G K    + V +++R  
Sbjct: 502 YADEVKALLEKAGFRVEVDHRNEKIGKKIREAQLKKVPYMLVLGDKEAEGATVAVRNRAG 561

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G +  MSL+E IN         
Sbjct: 562 GDQGAMSLDEFINILREEVEQK 583


>gi|262281009|ref|ZP_06058792.1| threonyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
 gi|262257909|gb|EEY76644.1| threonyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
          Length = 640

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 145/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHPNGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG   +Y   M        +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQIVDFTLWEKSGHAANYADNMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  +          L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTKEQIGQE-VADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P                           D    S     D    
Sbjct: 407 YKDFGFEEVQMKLSTRPEKR-----------------VGDDALWDMAEKSLADALDAAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +      +    F    +    + A++  
Sbjct: 450 EWELQPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQCD----FNLPER----LDASYVT 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++    +      P  ++P +  ++NI        +
Sbjct: 499 EDNDRDQPVMLHRAILGSFERFIGILI---EHYAGFMPPWLSPLQACVMNITDS---QAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           ACEK+ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R  
Sbjct: 553 ACEKVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS++  I+      +  
Sbjct: 613 KNLGTMSVDAFIDLVKSAVAER 634


>gi|299771535|ref|YP_003733561.1| threonyl-tRNA synthetase [Acinetobacter sp. DR1]
 gi|298701623|gb|ADI92188.1| threonyl-tRNA synthetase [Acinetobacter sp. DR1]
          Length = 640

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 145/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHPNGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG   +Y   M        +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQIVDFTLWEKSGHAANYADNMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  +          L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTKEQIGQE-VADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P                           D    S     D    
Sbjct: 407 YKDFGFEEVQMKLSTRPEKR-----------------VGDDALWDMAEKSLADALDAAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +      +    F    +    + A++  
Sbjct: 450 EWELQPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQCD----FNLPER----LDASYVT 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++    +      P  ++P +  ++NI        +
Sbjct: 499 EDNDRDQPVMLHRAILGSFERFIGILI---EHYAGFMPPWLSPLQACVMNITDS---QAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           ACEK+ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R  
Sbjct: 553 ACEKVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS++  I+      +  
Sbjct: 613 KNLGTMSVDAFIDLVKSAVAER 634


>gi|323692417|ref|ZP_08106653.1| threonine-tRNA ligase [Clostridium symbiosum WAL-14673]
 gi|323503557|gb|EGB19383.1| threonine-tRNA ligase [Clostridium symbiosum WAL-14673]
          Length = 645

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 154/442 (34%), Gaps = 42/442 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +++E   RD      +L L   M+H    G   +LP G +  + +    R+   +
Sbjct: 230 ESYLRMMEEARKRDHRKLGRELGLF--MMHDAGPGFPFFLPKGMELKNTLLEYWRQIHKK 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+S P + +  LW  SG +D Y   M      +++     P +       + S  +
Sbjct: 288 AGYVEISTPVILNRKLWETSGHWDHYKDNMYT-TVIDEEDYAIKPMNCPGGVLAYASEPR 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++ L  R E   +  G+MR R F   DA+ F    +       K     +
Sbjct: 347 SYRDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMTPDQIKDE--IKGVAHLI 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
              + L      +   + P     S E                   +       +  D++
Sbjct: 405 NEVYSLFGFKYHVELSTRPEDSMGSDE-----------------DWEMATEGLRSALDEL 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                + E   A Y    D H E   DS+    +     ++    F    ++       +
Sbjct: 448 GLDYVVNEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQLPQRF----ELEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG+ H    +     G++     ++     G    W   +AP ++ ++ I       
Sbjct: 497 TGADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPISDK---Y 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +   L + G     D   E+IG +   A     P  ++VG K   +  V ++ R
Sbjct: 551 ADYAKTVLEELEEAGIRAELDTRSEKIGYKIREAQTQKIPYMLVVGQKEEEEGNVSVRSR 610

Query: 422 LTGIREDMSLEEVINYASHRFS 443
             G     S    I       +
Sbjct: 611 FAGDEGSDSTAGFIEKIKKEIA 632


>gi|330810593|ref|YP_004355055.1| Threonine--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378701|gb|AEA70051.1| Threonine--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 640

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 148/447 (33%), Gaps = 41/447 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + S G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEESPGMVFWHPNGWTLYQVLEQYMRQVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M       ++     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TQSENRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        + +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRAFTQDDAHIFCTEEQMQAES-AAFIKLTMDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + M+  + P     S E                   D    +     D    
Sbjct: 407 YRDFGFTEVEMKLSTRPEKRVGSDE-----------------LWDRAEAALAAALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++       G        A +  
Sbjct: 450 AYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLDFNLPIRLG--------AEYVS 498

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  + H V +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKHPVMLHRAILGSFERFVGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FAAEVEKTLNQSGFRAKSDLRNEKIGFKIREHTLLKVPFLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN-RPVL 449
                M + E   + +   S   RP L
Sbjct: 613 ADLGSMPVAEFAEFLAQAVSRRGRPDL 639


>gi|240127689|ref|ZP_04740350.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 648

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 158/441 (35%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 242 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 300 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 359 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 418 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 468

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 469 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 509

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 510 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 563

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L         D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 564 YCREVAAKLQAADFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 622

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 623 EDLGSLDLDDFIAQLQQEITD 643


>gi|302325997|gb|ADL25198.1| threonine--tRNA ligase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 645

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 89/436 (20%), Positives = 163/436 (37%), Gaps = 41/436 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E   RD      ++ L    I  HS G+  W P G K ++ +   IR + +R
Sbjct: 239 ETYLKFLEEAEKRDHRKIGKEMDLY--HIEDHSPGMVFWHPKGTKMVNALKDYIRGKIDR 296

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P + +  LW++SG  D Y + M +     D  M   P +      IF + ++
Sbjct: 297 RGYLEVITPEIVNKTLWIKSGHADKYNENMFK-TLAGDVEMAVKPMNCPCHIQIFNTGLR 355

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R+LP    +     R E      G+MR R F+  DA+ F    + +            
Sbjct: 356 SWRDLPMRLAEFGKCHRYEPAGTMHGLMRVRGFVQDDAHIFCTEDQIASE-VADFCALVK 414

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+H  G   I ++  + P     S E                   D    +        
Sbjct: 415 EIYHDFGFDDIVVKFSTRPEKRVGSDE-----------------IWDKAEAALAEATKLA 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    +     L DSL  + +     ++       G        A +
Sbjct: 458 GLDYILNPGEGAFYGPKLEF---TLKDSLGRDWQCGTIQVDFNLPQRLG--------AEY 506

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D + H    +    +G++     ++    +     +P  +AP +  ++ I    +  
Sbjct: 507 VGKDNQKHIPVMLHRAAVGSIERFLGILI---EEFMGDFPLWLAPVQARVLPI---SEKF 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++   L   G  V  D+  E++G +    +L   P  +IVG K V+D  V ++ R
Sbjct: 561 VDYAKQVEKELVNAGVRVEVDESNEKLGYKIRQCELQKVPYLLIVGEKEVADGVVSVRKR 620

Query: 422 LTGIREDMSLEEVINY 437
             G +  M++ + +  
Sbjct: 621 KDGDKGSMTVAQFLEM 636


>gi|83748297|ref|ZP_00945322.1| Threonyl-tRNA synthetase [Ralstonia solanacearum UW551]
 gi|83725029|gb|EAP72182.1| Threonyl-tRNA synthetase [Ralstonia solanacearum UW551]
          Length = 635

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 148/444 (33%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    + + + G+  W P G +    V   +R     
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HLQEEAPGMVFWHPKGWQIWQAVEQYMRGRLAG 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG + +Y + M  + +   +     P +      IF   ++
Sbjct: 287 AGYSEVRTPQVMDRTLWEHSGHWQNYKENMF-VTESEKREYAIKPMNCPGHVQIFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T                
Sbjct: 346 SYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIFC-TEGQIMAEAKDFNDLAF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G +++ ++    P     + E    A+ G      +       +P E       
Sbjct: 405 SVYEDFGFENVAVKLALRPDKRAGTDEIWDHAEEGLRTALRACGVEWEELPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   + D++  + +     +++      G        A +
Sbjct: 458 ----------GAFYGPKVEYH---IKDAIGRSWQCGTLQLDLVLPERLG--------AEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G+      ++  +H G   +W        +S+          
Sbjct: 497 VAEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPLWLAPEQVVVMSIA------DAH 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E +   L K G     D   E+I  +     L   P  V+VG K    ++V ++ R
Sbjct: 551 AEYAETVAQSLQKQGFRASADLRNEKITYKIREHSLQKVPYLVVVGDKERDGNQVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M +   +    +  +N 
Sbjct: 611 GNVDLGSMPVSAFVERLQNDLANK 634


>gi|268686074|ref|ZP_06152936.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|268626358|gb|EEZ58758.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
          Length = 637

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 158/441 (35%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +     W +SG +D+Y   M  +     +     P +      IF + ++SY
Sbjct: 289 YKEVKTPQIMDKTFWEKSGHWDNYKDNMF-VTSSEKREYAVKPMNCPGHVQIFNNGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +        +RI
Sbjct: 348 RDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFN-ELLVRI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + +R    P     S +    A+ G  +   +       +P E         
Sbjct: 407 YKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +    + A +  
Sbjct: 458 --------GAFYGPKIEYH---VKDALGRSWQCGTLQLD----FVLPER----LDAEYVT 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++  +H G   +W   V    +++       +   D
Sbjct: 499 ENNDRARPVMLHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNIT------ENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++ A+L         D   E+IG +        FP Q+++G K   ++KV ++ R  
Sbjct: 553 YCREVAAKLQAADFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVR-RKA 611

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + L++ I       ++
Sbjct: 612 EDLGSLDLDDFIAQLQQEITD 632


>gi|261416474|ref|YP_003250157.1| threonyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372930|gb|ACX75675.1| threonyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 695

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 89/436 (20%), Positives = 163/436 (37%), Gaps = 41/436 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E   RD      ++ L    I  HS G+  W P G K ++ +   IR + +R
Sbjct: 289 ETYLKFLEEAEKRDHRKIGKEMDLY--HIEDHSPGMVFWHPKGTKMVNALKDYIRGKIDR 346

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P + +  LW++SG  D Y + M +     D  M   P +      IF + ++
Sbjct: 347 RGYLEVITPEIVNKTLWIKSGHADKYNENMFK-TLAGDVEMAVKPMNCPCHIQIFNTGLR 405

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S+R+LP    +     R E      G+MR R F+  DA+ F    + +            
Sbjct: 406 SWRDLPMRLAEFGKCHRYEPAGTMHGLMRVRGFVQDDAHIFCTEDQIASE-VADFCALVK 464

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+H  G   I ++  + P     S E                   D    +        
Sbjct: 465 EIYHDFGFDDIVVKFSTRPEKRVGSDE-----------------IWDKAEAALAEATKLA 507

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    +     L DSL  + +     ++       G        A +
Sbjct: 508 GLDYILNPGEGAFYGPKLEF---TLKDSLGRDWQCGTIQVDFNLPQRLG--------AEY 556

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D + H    +    +G++     ++    +     +P  +AP +  ++ I    +  
Sbjct: 557 VGKDNQKHIPVMLHRAAVGSIERFLGILI---EEFMGDFPLWLAPVQARVLPI---SEKF 610

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++   L   G  V  D+  E++G +    +L   P  +IVG K V+D  V ++ R
Sbjct: 611 VDYAKQVEKELVNAGVRVEVDESNEKLGYKIRQCELQKVPYLLIVGEKEVADGVVSVRKR 670

Query: 422 LTGIREDMSLEEVINY 437
             G +  M++ + +  
Sbjct: 671 KDGDKGSMTVAQFLEM 686


>gi|325276812|ref|ZP_08142513.1| threonyl-tRNA synthetase [Pseudomonas sp. TJI-51]
 gi|324098050|gb|EGB96195.1| threonyl-tRNA synthetase [Pseudomonas sp. TJI-51]
          Length = 640

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W   G      +   +R  Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKQLDLF--HLQEEAPGMVFWHANGWTVYQVLEQYMRGVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG + +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQVVDRILWERSGHWSNYAENMFT-TSSESRDYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +  K +        L +
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIFCTEEQVKKEA-ADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E                   D    +     ++   
Sbjct: 407 YKDFGFSDIAMKLSTRPAKRVGSEE-----------------LWDRAEGALADALNESGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L  N +      +              + A++  
Sbjct: 450 EWEYQPGEGAFYGPKIEF---TLRDCLGRNWQCGTLQYDPNLP--------ERLDASYIA 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D      V +    +G+      ++    +    ++P  +AP +  ++NI        D
Sbjct: 499 EDNSRVRPVMLHRAILGSFERFIGMLI---EHYAGVFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L+  G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALQVEKSLNGSGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVETQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + + +   +   S  
Sbjct: 613 ADLGSMPVAQFVELLNQAVSRR 634


>gi|323484406|ref|ZP_08089772.1| hypothetical protein HMPREF9474_01523 [Clostridium symbiosum
           WAL-14163]
 gi|323402184|gb|EGA94516.1| hypothetical protein HMPREF9474_01523 [Clostridium symbiosum
           WAL-14163]
          Length = 645

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 153/442 (34%), Gaps = 42/442 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +++E   RD      +L L   M+H    G   +LP G +  + +    R+   +
Sbjct: 230 ESYLRMMEEARKRDHRKLGRELGLF--MMHDAGPGFPFFLPKGMELKNTLLEYWRQIHKK 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+S P + +  LW  SG +D Y   M      +++     P +       + S  +
Sbjct: 288 AGYVEISTPVILNRKLWETSGHWDHYKDNMYT-TVIDEEDYAIKPMNCPGGVLAYASEPR 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++ L  R E   +  G+MR R F   DA+ F    +       K     +
Sbjct: 347 SYRDLPLRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMTPDQIKDE--IKGVAHLI 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
              + L      +   + P     S E                   +          D++
Sbjct: 405 NEVYSLFGFKYHVELSTRPEDSMGSDE-----------------DWEMATEGLRLALDEL 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                + E   A Y    D H E   DS+    +     ++    F    ++       +
Sbjct: 448 GLDYVVNEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQLPQRF----ELEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG+ H    +     G++     ++     G    W   +AP ++ ++ I       
Sbjct: 497 TGADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPISDK---Y 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +   L + G     D   E+IG +   A     P  ++VG K   +  V ++ R
Sbjct: 551 ADYAKTVLEELEEAGIRAELDTRSEKIGYKIREAQTQKIPYMLVVGQKEEEEGNVSVRSR 610

Query: 422 LTGIREDMSLEEVINYASHRFS 443
             G     S    I       +
Sbjct: 611 FAGDEGSDSTAGFIEKIKKEIA 632


>gi|146282712|ref|YP_001172865.1| threonyl-tRNA synthetase [Pseudomonas stutzeri A1501]
 gi|166225484|sp|A4VM22|SYT_PSEU5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145570917|gb|ABP80023.1| threonyl-tRNA synthetase [Pseudomonas stutzeri A1501]
          Length = 640

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G     N+   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRRIGKQLDLF--HTQEEAPGMVFWHPAGWTLYQNLEQYMRQVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG + +Y + M       ++     P +      IF   +KSY
Sbjct: 289 YQEVRTPQVVDRILWEKSGHWSNYAENMFT-TSSENRDYAVKPMNCPCHVQIFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  K +        L++
Sbjct: 348 RDLPLRMAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEEQVKKEA-ADFIKLTLKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E                   D    +     ++   
Sbjct: 407 YADFGFSDIAMKLSTRPAKRVGSDE-----------------LWDRAEGALAEALNESGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L  N +      +              + A++  
Sbjct: 450 AWEYQPGEGAFYGPKIEF---TLRDCLGRNWQCGTLQYDPNLP--------ERLDASYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++    +     +P  +AP +  ++NI         
Sbjct: 499 EDNSRQRPVMLHRAILGSFERFIGMLI---EHYAGAFPAWLAPTQAVIMNITDK---QAA 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FAIEVEKTLVQSGFRAKCDLRNEKIGFKIREHTLLKTPYLLVIGDREVETRSVAVRSREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M LE+     +   S  
Sbjct: 613 VDMGSMPLEQFAQLLAQAVSRR 634


>gi|327481051|gb|AEA84361.1| threonyl-tRNA synthetase [Pseudomonas stutzeri DSM 4166]
          Length = 640

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G     N+   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRRIGKQLDLF--HTQEEAPGMVFWHPAGWTLYQNLEQYMRQVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG + +Y + M       ++     P +      IF   +KSY
Sbjct: 289 YQEVRTPQVVDRILWEKSGHWSNYAENMFT-TSSENRDYAVKPMNCPCHVQIFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  K +        L++
Sbjct: 348 RDLPLRMAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEEQVKKEA-ADFIKLTLKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E                   D    +     ++   
Sbjct: 407 YADFGFSDIAMKLSTRPAKRVGSDE-----------------LWDRAESALAEALNESGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L  N +      +              + A++  
Sbjct: 450 AWEYQPGEGAFYGPKIEF---TLRDCLGRNWQCGTLQYDPNLP--------ERLDASYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++    +     +P  +AP +  ++NI         
Sbjct: 499 EDNSRQRPVMLHRAILGSFERFIGMLI---EHYAGAFPAWLAPTQAVIMNITDK---QAA 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FAIEVEKTLVQSGFRAKCDLRNEKIGFKIREHTLLKTPYLLVIGDREVETRSVAVRSREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M LE+     +   S  
Sbjct: 613 VDMGSMPLEQFAQLLAQAVSRR 634


>gi|261339515|ref|ZP_05967373.1| threonine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
 gi|288318328|gb|EFC57266.1| threonine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
          Length = 622

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEDQVRDE-VNACIRMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------TWDRAEADLAVALEENGI 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F    + S    A++ G
Sbjct: 431 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPQRLS----ASYVG 479

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G++     ++     G    W   V    +++           D
Sbjct: 480 EDNERQVPVMIHRAILGSLERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQAD 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 534 YVKELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + EVI        + 
Sbjct: 594 KDLGSLDVSEVIEKLQQEIRSR 615


>gi|262369846|ref|ZP_06063173.1| threonyl-tRNA synthetase [Acinetobacter johnsonii SH046]
 gi|262314885|gb|EEY95925.1| threonyl-tRNA synthetase [Acinetobacter johnsonii SH046]
          Length = 640

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHPNGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG   +Y   M        +     P +      +F   +KSY
Sbjct: 289 YLEIRTPQVVDFTLWEKSGHAANYADGMFT-THSESRNYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  +          L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTKEQIGQE-VADFIQLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P                           D    S     D    
Sbjct: 407 YKDFGFEDVQMKLSTRPEKR-----------------VGDDALWDMAEKSLADALDAAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +      +    F    +    + A++  
Sbjct: 450 EWELQPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQCD----FNLPER----LDASYVT 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++    +      P  + P +  ++NI        +
Sbjct: 499 EDNDRDQPVMLHRAILGSFERFIGILI---EHYAGFMPPWLTPIQACVMNITDS---QAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           ACE + A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R  
Sbjct: 553 ACESVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS++  ++      +  
Sbjct: 613 TNLGTMSIDAFVDLVKAAVAER 634


>gi|206580341|ref|YP_002237974.1| threonyl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|288934884|ref|YP_003438943.1| threonyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|290509026|ref|ZP_06548397.1| threonyl-tRNA synthetase [Klebsiella sp. 1_1_55]
 gi|238065116|sp|B5XQC6|SYT_KLEP3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|206569399|gb|ACI11175.1| threonyl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|288889593|gb|ADC57911.1| threonyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|289778420|gb|EFD86417.1| threonyl-tRNA synthetase [Klebsiella sp. 1_1_55]
          Length = 642

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEDQVRDE-VNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------TWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F    + S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPQRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G++     ++     G    W   V    +++           +
Sbjct: 500 ENNERQVPVMIHRAILGSLERFIGILTEEFAGFFPTWIAPVQVVVMNIT------DSQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KDLGSMDVSEVIEKLQQEIRSR 635


>gi|260597637|ref|YP_003210208.1| threonyl-tRNA synthetase [Cronobacter turicensis z3032]
 gi|260216814|emb|CBA30296.1| Threonyl-tRNA synthetase [Cronobacter turicensis z3032]
          Length = 642

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHVFCTEEQVRDE-VNSCIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGTDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F    + S    A++ G
Sbjct: 451 PFEYQPGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPARLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 ENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + +VI        + 
Sbjct: 614 KDLGSLDVNDVIEKLQQEIRSR 635


>gi|300716458|ref|YP_003741261.1| Threonyl-tRNA synthetase [Erwinia billingiae Eb661]
 gi|299062294|emb|CAX59411.1| Threonyl-tRNA synthetase [Erwinia billingiae Eb661]
          Length = 642

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLTEYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPLMMDRVLWEKTGHWENYKEAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQVRTE-VNSCIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P+    + E                   D           +   
Sbjct: 408 YSTFGFEKIVVKLSTRPVKRIGTEE-----------------QWDRAEADLAAALKENDI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPSRLS----ASYIG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G++     ++   + G    W   V    +++           +
Sbjct: 500 ENNERQVPVMIHRAILGSVERFIGILTEEYAGFFPTWLAPVQVVVMNIT------DGQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G     D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVAELTRKLQNAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KDLGSMDVNEVIAKLQDEIRSR 635


>gi|238895235|ref|YP_002919970.1| threonyl-tRNA synthetase [Klebsiella pneumoniae NTUH-K2044]
 gi|238547552|dbj|BAH63903.1| threonyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 642

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEDQVRDE-VNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------TWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F    + S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPQRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G++     ++     G    W   V    +++           +
Sbjct: 500 ENNERQVPVMIHRAILGSLERFIGILTEEFAGFFPTWIAPVQVVVMNIT------DSQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KDLGSMDVNEVIEKLQQEIRSR 635


>gi|150389418|ref|YP_001319467.1| threonyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
 gi|149949280|gb|ABR47808.1| threonyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 636

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/439 (18%), Positives = 155/439 (35%), Gaps = 41/439 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      +L L +  +++   G   + P G    + +    R E  + G  E
Sbjct: 236 RLEEAKKRDHRKIGKELDLFS--LNEEGPGFPFFHPNGMIVRNELENFWRREHTKRGYEE 293

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + +  LW +SG +D Y + M    + +D      P +      +++  + SYR+L
Sbjct: 294 IKTPIILNEQLWKQSGHWDHYQENM-YFTNIDDANYAVKPMNCPGSILMYKRKMHSYRDL 352

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    ++ L  R EL     G+MR R F   DA+ F L  +        +       +  
Sbjct: 353 PIRMGELGLVHRHELSGALHGLMRVRCFTQDDAHIFMLPEQIKDE-ILGVMNFVDYFYKV 411

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G K       + P     + E                   D  I S     ++      
Sbjct: 412 FGFKYHI-ELSTRPKDSMGTDE-----------------EWDLAINSLREALEENNVKYK 453

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           + E   A Y    D H E   D++    +     ++    F    ++       + GADG
Sbjct: 454 LNEGDGAFYGPKIDFHLE---DAIGRTWQCGTIQLD----FQMPQRFD----INYVGADG 502

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H    +     G++     ++    +     +P  +AP +  ++ I  +     +   
Sbjct: 503 EKHRPIMIHRVIFGSIERFIGILI---EHYAGKFPAWLAPVQAKILPITDNH---LEYAR 556

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+  ++ +    V  D+  E+IG +   A L   P  +++G K V    V ++ R  G  
Sbjct: 557 KLQQQMLEKDIRVVIDERSEKIGFKIREARLERVPYMLVIGDKEVESETVAVRAREEGEL 616

Query: 427 EDMSLEEVINYASHRFSNN 445
             +   + I       ++ 
Sbjct: 617 GAVDASKFIGDLVKEIADK 635


>gi|294101704|ref|YP_003553562.1| threonyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
 gi|293616684|gb|ADE56838.1| threonyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
          Length = 633

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 94/448 (20%), Positives = 162/448 (36%), Gaps = 44/448 (9%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + ++  L+E   RD      +L L +  I     G   + P G   L+ +    R+   +
Sbjct: 225 QTYITRLEEAKNRDHRKIGKELDLFS--IQPEGPGFPFFHPKGMAILNKLTEFWRQVHEK 282

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW+ SG +D Y   M    + ++      P +      I++S I+
Sbjct: 283 NGYCEIRTPLILDRSLWIRSGHWDHYRDNM-YFTEIDEMPFAIKPMNCPGGILIYKSQIR 341

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++ +  R E      G+MR R F   DA+ +  TPE  K     +     
Sbjct: 342 SYRDLPLRMAELGIVHRHERSGVLHGLMRVRCFTQDDAHLYC-TPEQVKDEIKGIMYLCQ 400

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+  +      M   + P     S E   +A+T                 +     ++ 
Sbjct: 401 YIYRDIFGFKYTMELSTRPENSMGSEEQWNIAET-----------------ALKEALEET 443

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    D H E              R  + G I     +       TF
Sbjct: 444 NMQYRVNPGDGAFYGPKIDFHLED----------CIGRTWQCGTI-QLDFQMPEKFDLTF 492

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADGK+H    +    +G++     ++     G    W   +AP ++ L+ I    +  
Sbjct: 493 VGADGKEHRPVMLHRTILGSLERFFGILIEQFAGAFPYW---LAPVQVRLLPI---SEDF 546

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    + A+L      V  D   E++G +   A +   P   ++G K V+  +V  + R
Sbjct: 547 LDYARLVQAKLVANNIRVEIDSRDEKLGKKIRDAQIQKIPYMAVIGEKEVASDQVAPRER 606

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
             G    MS+   I+      +   P+L
Sbjct: 607 SRGDLGAMSINSFIDVLMEEKN---PLL 631


>gi|15602458|ref|NP_245530.1| threonyl-tRNA synthetase [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431883|sp|P57857|SYT_PASMU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|12720863|gb|AAK02677.1| ThrS [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 643

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 144/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LSEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 EYDYQEVKGPFMMDRVLWEKTGHWQNY-GDLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTACIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G ++I ++  + P     + E    A+ G                        
Sbjct: 405 YDIYSTFGFENIQVKLSTRPEKRIGADEMWDRAEAGLAAALSHN---------------- 448

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++               +A+
Sbjct: 449 -GLEYEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTIQLDFALPGRL--------NAS 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNDRRTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQAIVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   LS  G  V  D   E+IG +     L   P  ++ G K +   KV ++ 
Sbjct: 551 QSDYVQKVVKTLSDAGLRVKSDLRNEKIGFKIREHTLRRVPYMLVCGDKEIEAGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE ++    +  + 
Sbjct: 611 RKGADLGTFTIEEFLDILKKQVRSR 635


>gi|253996955|ref|YP_003049019.1| threonyl-tRNA synthetase [Methylotenera mobilis JLW8]
 gi|253983634|gb|ACT48492.1| threonyl-tRNA synthetase [Methylotenera mobilis JLW8]
          Length = 635

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/442 (15%), Positives = 140/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L      +   + G+  W P G      V   +R+     G
Sbjct: 231 YLFQLEEAEKRDHRKLGKQLDYF--HMQDDAPGMVFWHPRGWSIWQEVEQYMRQMFKSFG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  PT+    LW +SG + +Y   M  +    ++     P +      IF + + SY
Sbjct: 289 YQEVRTPTVMDKTLWEKSGHWQNYRDNMF-VTSSENREYAVKPMNCPGHVQIFNNQLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +           + 
Sbjct: 348 RDLPLRLAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIEAEVADFIQMLYKA 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++  + P     + E                   D    +     +    
Sbjct: 407 YGDFGFNDVLVKLSTRPEKRVGADE-----------------TWDKAEAALANALNANNL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L DSL    +     ++       G        A +  
Sbjct: 450 AFDLQPGEGAFYGPKIEF---TLKDSLGRLWQCGTIQLDFNLPERLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++    +      P  +AP ++ ++NI    +   D
Sbjct: 499 EDNSRQRPVMLHRAIVGSMERFIGILI---ENYAGAMPLWLAPVQVMVLNI---SESQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G    +D   E+I  +     +   P  ++ G + +    + ++ R  
Sbjct: 553 YVRQVVETLRQNGIRCEFDLRNEKITYKIREHSMQKMPYLLVAGEREMQAGHLAVRTRKG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M ++ +I          
Sbjct: 613 EDLGSMPIDALIERLKAEIEAK 634


>gi|237747667|ref|ZP_04578147.1| threonyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
 gi|229379029|gb|EEO29120.1| threonyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
          Length = 635

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 143/443 (32%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L        + G+  W   G      V   +R      G
Sbjct: 231 YLHMLEEAEKRDHRRLGRSLDLF--HFQDEAPGLIFWHAKGWTIWQQVEQYMRRVYQENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y + M    +  ++     P +      I+RS++ SY
Sbjct: 289 YQEVKGPQILDRSLWEKSGHWDNYKENMFT-TESENRIYALKPMNCPGHVQIYRSNLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + +     R+E      G+MR R F   D + F    +              ++
Sbjct: 348 RELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIFCTEDQILDECVAFT-DLLKKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  +  + P     S E                   D    +     +    
Sbjct: 407 YQDFGFTDIIYKIATRPEKRVGSDE-----------------AWDKAENALIQSLERSGC 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D++    +     ++       G        A +  
Sbjct: 450 SYELSPGDGAFYGPKIEY---TLKDAIGRMWQCGTIQVDFSMPMRLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G++     ++  +H G   +W   V    +++           +
Sbjct: 499 EDNTRKIPVMIHRAILGSLERFIGILIENHAGAMPLWLAPVHATVLNI------SDSQAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   + K G     D   E+I  +     +   P  ++VG K  + + V ++ R  
Sbjct: 553 YAQSVVQTMKKAGFRAEVDLRNEKITYKIRDHSVNKVPYLIVVGDKEKNANTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M++EE++    +   + +
Sbjct: 613 VDLGVMTVEELMARMENEIQSKQ 635


>gi|291563461|emb|CBL42277.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase
           [butyrate-producing bacterium SS3/4]
          Length = 646

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 150/446 (33%), Gaps = 41/446 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M+     G   +LP G    + +    RE   + G
Sbjct: 231 YVTMMEEAKKRDHRKLGKELGLF--MMSDAGPGFPFFLPKGMVLKNTLLDYWREIHKKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + +  LW  SG +D Y   M      + +     P +      ++ S  +SY
Sbjct: 289 YVEISTPIILNRSLWETSGHWDHYKNNMYT-TIIDGEDYAIKPMNCPGGVLVYASEPRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ +  R E   +  G+MR R F   DA+ F    +       K     +  
Sbjct: 348 RDLPLRMGELGIVHRHEKSGQLHGLMRVRCFTQDDAHIFMTPEQIRDE--IKNVAGLINQ 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            + L      +   + P     S E                   +    S     DD+  
Sbjct: 406 VYSLFGFKYHVELSTRPEDSMGSDE-----------------DWELATSSLQGALDDLGL 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H   L D++    +     ++    F    ++       + G
Sbjct: 449 DYVINEGDGAFYGPKIDFH---LVDAIGRTWQCGTIQLD----FQLPQRF----ELEYIG 497

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           ADG+ H   M          +   I    +     +P  +AP ++ ++ I    +   + 
Sbjct: 498 ADGEKHRPIMIHRVC--FGSIERFIGILIEHFAGAFPTWLAPVQVKVLPI---SEKYEEY 552

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + + A L         D   E+IG +   A     P  ++VG K  +D  V ++ R  G
Sbjct: 553 AKSVKAALDAADIRAEIDLRSEKIGYKIREAQGQKIPYMLVVGQKEQADGTVSVRSRFKG 612

Query: 425 IREDMSLEEVINYASHRFSNN--RPV 448
                 L   I       +    RPV
Sbjct: 613 DEGAEDLNVFIANIKAEIAGRVNRPV 638


>gi|237755902|ref|ZP_04584494.1| threonyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691927|gb|EEP60943.1| threonyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 643

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 151/442 (34%), Gaps = 39/442 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L   +  +   G+  WLP G      +    ++E  + G
Sbjct: 235 YLNMLEEAKKRDHRKIGKDLELFL-IDEEIGGGLAIWLPKGAIIRKEIEDAWKKEHLKRG 293

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +    LW  SG    Y + M       ++     P +     +I++S  +SY
Sbjct: 294 YQLVYTPHVGKEQLWQTSGHLSLYQENMYPRMQIEEEGYYVKPMNCPFHVEIYKSKQRSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP    ++   +R E      G+MR R F   DA+      +                
Sbjct: 354 KELPIRLAELGTVYRYERSGALHGLMRVRGFTQDDAHIICREDQVEDEIREV-------- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     +      +      EF V   T   +        +    S     +    
Sbjct: 406 ----------LNLALNTLKSYGFDEFEVYLSTKPEKYVGDDKMWEIAENSLRKAIESTGL 455

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    DV   K+ D++    + S    +    F    ++ +     + G
Sbjct: 456 DYKIDEGGGAFYGPKIDV---KIKDAIGRLWQCSTIQFD----FNLPERFDMY----YIG 504

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D + H    +     G++     V+   + G   +W   ++P ++ +I I        +
Sbjct: 505 EDNQKHRPYMIHRAIFGSIERFIGVLLEHYAGFLPVW---LSPVQVKIIPIADKH---LE 558

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E +  +L +    V  DD  E++  +   A+L   P  ++VG K      V ++ +  
Sbjct: 559 YAETVKQKLLENDIRVELDDRNERMNKKIRDAELQKIPFMLVVGDKEAETGTVAVREKGK 618

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              + +S++E ++      SN 
Sbjct: 619 QGSQTLSIDEFVSKIKEIISNK 640


>gi|121997230|ref|YP_001002017.1| threonyl-tRNA synthetase [Halorhodospira halophila SL1]
 gi|166223346|sp|A1WU53|SYT_HALHL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|121588635|gb|ABM61215.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Halorhodospira
           halophila SL1]
          Length = 640

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 147/444 (33%), Gaps = 39/444 (8%)

Query: 2   RRSKYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L +   RD         L    + + S G+  W P G +    V   IR  
Sbjct: 226 KQLKAYLDRLAEAERRDHRRLGRTQDLF--HVQEESPGMVFWHPRGWRLYLEVQDYIRRL 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P L    LW  SG +  + + M  + +   +     P +     ++F+ 
Sbjct: 284 MRDNGYQEIHTPMLVDRSLWERSGHWAMFAENMF-VTESESRDYAVKPMNCPCHVEVFKQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F+  DA+ F  T    +        
Sbjct: 343 GLKSYRDLPLRLAEFGSCHRNEPSGTLHGLMRVRGFVQDDAHIFC-TENQIQEEVRTFID 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              R +   G + + +   + P                  +        D    +  T  
Sbjct: 402 LVYRAYRDFGFEDVLIALSTRP-----------------DERVGDDALWDKAESALATAL 444

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +      ++     A Y    +     L D L    ++    ++       G ++     
Sbjct: 445 ETHGLDYTLQPGEGAFYGPKIEF---SLRDCLERVWQLGTIQVDFSMPGRLGAQF----- 496

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                   +   V +    +G++     ++   + G    W   V    +++        
Sbjct: 497 --VDDDGERRTPVMLHRAILGSLERFIGILIEHYGGALPTWLAPVQAVVLNIT------D 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D    +  +L + G     D   E+IG +     L   P  +++G + +    V ++
Sbjct: 549 RQADYARSVEQQLLESGFRAEADLRNEKIGYKIREHTLQKVPYMLVLGDRELESGTVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
           HR       M LEE++   S+  +
Sbjct: 609 HRDGTDLGSMELEELVARLSNDIA 632


>gi|310640050|ref|YP_003944808.1| ser-tRNA(thr) hydrolase / threonyl-tRNA synthetase [Paenibacillus
           polymyxa SC2]
 gi|309245000|gb|ADO54567.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Paenibacillus
           polymyxa SC2]
          Length = 637

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 152/442 (34%), Gaps = 42/442 (9%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   M  + + G+  +LP G      +    R+ Q   G 
Sbjct: 235 LHLLEEAKKRDHRKLGKELELF--MFSEEAPGMPFYLPKGMVVRTALEDYSRDIQRLHGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG Y+ Y + M   ++ ++      P +      +F++ + SYR
Sbjct: 293 EEVRTPLMMNNRLWEQSGHYEHYKENM-YFSEVDETTFALKPMNCPGHMLVFKNELHSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R EL     G+MR R F   DA+ F  TP   +     +      ++
Sbjct: 352 DLPIRISEFGQVHRHELSGALNGMMRVRTFCQDDAHIFV-TPGQIEKEITDVIKLINEMY 410

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G                   +F V   T            D    +     D +   
Sbjct: 411 SVFG------------------FDFTVELSTRPDDFMGEPALWDQAEQALQNVLDHLGIN 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I     A Y    D H   + D+L  + +     ++    F    K+      T+ G 
Sbjct: 453 YRINAGDGAFYGPKIDFH---ILDALKRSWQCGTIQLD----FQMPEKFD----LTYVGE 501

Query: 306 DGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D + H    +     G++     ++     G   +W   V    + +       +   + 
Sbjct: 502 DNQKHRPVVIHRAIYGSIDRFMGILTEHFTGAFPLWLAPVHAKLLPV------SENYIET 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++   L K G  V  D   E++G +   A L   P   ++G    +   V ++ R  G
Sbjct: 556 ANEVQEALLKAGLRVEVDTRNEKLGYKIREAQLEKVPYMFVIGENEKTTGTVAVRKRGEG 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                S+ +++   S      +
Sbjct: 616 DLGSFSIADIVEKISTEIHEKQ 637


>gi|30248961|ref|NP_841031.1| thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) protein
           [Nitrosomonas europaea ATCC 19718]
 gi|73919810|sp|Q82VV1|SYT_NITEU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|30138578|emb|CAD84869.1| thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 635

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 147/442 (33%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      +L L      + + G+  W P G      +   +R+     G
Sbjct: 231 YLRCLEEAEKRDHRKLGKQLDLF--HTQEEAPGMVYWHPKGWVVWQQIEQYMRQTLAGNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG ++++ + M  + +  ++     P +      +F   ++SY
Sbjct: 289 YVEIRTPQVLDRSLWESSGHWENFRENMF-ITESENRHYAIKPMNCPGHVQVFNHGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +       K      ++
Sbjct: 348 RDLPLRLAEFGSCHRNEASGALHGLMRVRSFTQDDAHIFCTEDQILGE-VTKFIDLLNQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++  + P+    + +    A+T        K+      P E         
Sbjct: 407 YINFGFSETLIKLSTRPLKRVGTEDQWDKAETALATALNQKELNWEVQPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L DSL    +     ++       G        A +  
Sbjct: 458 --------GAFYGPKIEF---TLKDSLGRKWQCGTLQLDFSMPARLG--------AGYIA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G   +W        +++       +   +
Sbjct: 499 EDNTRKIPVMLHRAILGSMERFIGILIEHHAGALPLWLSPEQVIILNI------SRNQAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + I   L + G     D   E+I  +     +   P  ++VG K + +  V ++ R  
Sbjct: 553 YAQLITDELKQSGIRASSDLRNEKISYKIREHSMQKIPYLMVVGDKEMENRTVTVRGRAG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+E  +  A    +  
Sbjct: 613 QDYGAMSVESFVVRAQEEIAKR 634


>gi|237745470|ref|ZP_04575950.1| threonyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
 gi|229376821|gb|EEO26912.1| threonyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
          Length = 650

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 143/443 (32%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L        + G+  W P G      V   +R+     G
Sbjct: 246 YLHMLEEAEKRDHRRLGRSLDLF--HFQDEAPGLIFWHPKGWTIWQQVEQYMRKVYRDNG 303

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y + M    +  ++     P +      I+RS++ SY
Sbjct: 304 YQEVKGPQILDRSLWEKSGHWDNYKENMFT-TESENRVYAIKPMNCPGHVQIYRSNLHSY 362

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + +     R+E      G+MR R F   D + F    +              ++
Sbjct: 363 RELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIFCTEDQILDECVAFT-DLLKKV 421

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  +  + P     S E                   D    +          
Sbjct: 422 YKDFGFTDIIYKVATRPEKRVGSDE-----------------AWDKAENALIESLKRSGC 464

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D++    +     ++       G        A +  
Sbjct: 465 EFELSPGDGAFYGPKIEY---TLRDAIGRMWQCGTIQVDFSMPMRLG--------AEYVA 513

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G++     ++  +H G   +W   V    +++           +
Sbjct: 514 EDNTRKIPVMIHRAILGSLERFIGILIENHAGAMPLWLAPVQAVVLNI------SDAQAE 567

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   + K G  V  D   E+I  +     +   P  ++VG K  + + V ++ R  
Sbjct: 568 YAKSVVETMKKAGLRVEADLRNEKITYKIRDHSVNKVPYLLVVGDKEKNGNTVAVRARGG 627

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                MS +E+I    +     +
Sbjct: 628 VDLGAMSADELIARMENEIRAKQ 650


>gi|313637683|gb|EFS03062.1| threonyl-tRNA synthetase [Listeria seeligeri FSL S4-171]
          Length = 483

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 168/441 (38%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R G
Sbjct: 73  FIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLG 131

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SY
Sbjct: 132 YNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSY 191

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++ +  R E+      ++    +  +     + P+  K  + ++    L ++
Sbjct: 192 RELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVY 251

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIIS 244
               +K    R                  D   T+ +   D   D       +  D++  
Sbjct: 252 KDFDIKDYSFRLS--------------YRDPKNTEKYFDDDAMWDKAQAMLKSAMDEMGM 297

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                +   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G
Sbjct: 298 DYFEADGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIG 346

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   +     G +  +   +    +     +P  +AP ++ LI + A      D 
Sbjct: 347 EDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQMELIPVNA--DAHLDY 402

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L + G  V  DD  E++G +   A     P  +++G + +    V ++   + 
Sbjct: 403 AKGVQDKLQRAGLRVEVDDRNEKLGYKIREAQTKKIPYALVLGDQEMESGTVNVRRYGSK 462

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E M L+  I+      S  
Sbjct: 463 DSETMELDTFISQVVQEVSKY 483


>gi|150021207|ref|YP_001306561.1| threonyl-tRNA synthetase [Thermosipho melanesiensis BI429]
 gi|149793728|gb|ABR31176.1| threonyl-tRNA synthetase [Thermosipho melanesiensis BI429]
          Length = 636

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 169/444 (38%), Gaps = 43/444 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L +L+E   RD      KL L    I+   + G+  +LP G   L+ + A  R      
Sbjct: 232 YLKMLEEAKKRDHRKLGPKLGLF--FINTDVAAGMPIFLPKGTIILNELMAFSRSLHEEY 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +  LW +SG +D Y + M    ++ +      P +      I+++++ S
Sbjct: 290 GYTEVMTPLVMNVKLWYQSGHWDHYKENM-YFTEKEEVEYAIKPMNCPGHILIYKNNVVS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP   ++     R E      G++R R F   DA+ F    +  +   +K+     +
Sbjct: 349 YRDLPIRLFEFGKVHRYERSGVLHGLLRVRAFTQDDAHIFCRQDQIEEE-VSKVVKLIDQ 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G         + P       E                   +    +     +DI 
Sbjct: 408 LYKPFGFSYRAT-LSTMPEDHMGDEE-----------------TWEKATNALRKVLEDIK 449

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + DSL    + +   ++    F    ++      T+ 
Sbjct: 450 LEFEVAEGEGAFYGPKVDFH---VRDSLGREWQCATIQLD----FQMPERF----ELTYV 498

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG +   V + +   G++     ++    +     +P  ++P ++ ++ +        
Sbjct: 499 DKDGIEKRPVMIHTAKYGSLERFFGILI---EHFAGAFPLWLSPIQVVVLPVSDK---YV 552

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               KIY+ L + G  V  DD  E +G +   A +   P  +IVG +     K+ I+ R 
Sbjct: 553 SYARKIYSILMENGVRVSVDDRNETLGYKIREAQINKIPYMIIVGEREEESGKISIRSRD 612

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
              ++D+++EE ++  S      R
Sbjct: 613 GVEQKDIAVEEFLDLLSVSIKERR 636


>gi|312113796|ref|YP_004011392.1| threonyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218925|gb|ADP70293.1| threonyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
          Length = 640

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 158/440 (35%), Gaps = 40/440 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L    + + + G   W P G      + A +R  Q+ 
Sbjct: 230 KSYLTMLEEAEKRDHRRLGREMDLF--HLQEEAPGSVFWHPKGWTVFQALIAFMRRRQHA 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G +E++ P +    LW +SG ++ +G+ M      +++     P +      IF++ +K
Sbjct: 288 SGHVEVNSPDMMERKLWEQSGHWEKFGENMFVTETPDERVFCCKPMNCPGHIQIFKNGLK 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R E      G+MR R F   DA+ F    + ++   +      L
Sbjct: 348 SYRDLPLRIAEFGKVHRYEPSGALHGIMRVRHFTQDDAHIFCTPEQITEECVHLN-SLLL 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G + + ++  + P     S E                   D    +     +  
Sbjct: 407 SIYRDFGFEDVVIKLSTRPEKRVGSDE-----------------VWDKAEAALKAAVEAA 449

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               ++     A Y    +     L D++    +     ++       G        A +
Sbjct: 450 GEPYTLNPGEGAFYGPKLEY---TLRDAIGREWQCGTIQLDFNLPVRLG--------AFY 498

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG  H    +     G++     ++  ++ G   +W   V     +++         
Sbjct: 499 IGEDGAKHTPVMIHRALFGSLERFIGILIENYAGHLPLWLSPVQTMVATIV------SDA 552

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++ A L   G     D   E+I  +     L   P+  +VG +   +  V ++  
Sbjct: 553 DAYAGEVEAALVAAGVRAETDLRNEKINYKVREHSLAKVPVMFVVGKREAEERTVSVRRL 612

Query: 422 LTGIREDMSLEEVINYASHR 441
            +  +E +SL+E I   +  
Sbjct: 613 GSQAQETLSLDEAIARIATE 632


>gi|70729481|ref|YP_259219.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
 gi|68343780|gb|AAY91386.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
          Length = 640

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 147/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPNGWTLYQVLEQYMRKVQRDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y + M    +   +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYAENMFT-TESESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        + +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES-AAFIKLTMDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I M+  + P                      S D  D    +     D    
Sbjct: 407 YADFGFKDIEMKLSTRPEKR-----------------VGSDDLWDRAESALAAALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++       G        A +  
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLDFNLPIRLG--------AEYVS 498

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  + H V +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKHPVMLHRAILGSFERFVGILIEHYE---GAFPAWLAPTQAVVMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKTLNQSGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +   + +   S  
Sbjct: 613 EDLGSMPVAQFSAFLAQAVSRR 634


>gi|164687668|ref|ZP_02211696.1| hypothetical protein CLOBAR_01310 [Clostridium bartlettii DSM
           16795]
 gi|164603442|gb|EDQ96907.1| hypothetical protein CLOBAR_01310 [Clostridium bartlettii DSM
           16795]
          Length = 639

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 84/448 (18%), Positives = 162/448 (36%), Gaps = 42/448 (9%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +++E   RD      +L L    I +   G   ++P G +  + +    RE    
Sbjct: 229 EAYLHLMEEAKKRDHRKLGKELDLF--FIPEEGPGFPLFMPKGMQLKNALLEFWREVHKE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +E+  P + +  LW  SG +  Y + M  +   +D+     P +       ++S   
Sbjct: 287 DNYVEIETPIILNRHLWETSGHWYHYKENMYTVK-IDDQDFAIKPMNCPGGMLYYKSKPH 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+ P    ++    R EL     G+MR R F   DA+ F L  +       K  V  +
Sbjct: 346 SYRDFPMRVAELGRVHRHELSGALHGLMRVRAFTQDDAHIFMLPEQIKDE--IKDVVRLI 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
              +++      +   + P     + E                   +          +++
Sbjct: 404 DSVYKVFGFQYGIELSTRPEDSMGTDE-----------------EWEIAENGLREALEEL 446

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A Y    D H   L D L    +     +++        ++     AT+
Sbjct: 447 GLAYEINEGDGAFYGPKIDFH---LRDCLGRTWQCGTIQLDM----QLPQRFD----ATY 495

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H    +    +G++     ++    +     +P  +AP ++ ++ I       
Sbjct: 496 IGQDGEKHRPVMIHRVLLGSIERFIGILI---EHYAGKFPVWIAPTQVKILPISDK---Y 549

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +   L   G  V  DD  E++G +   A L   P  ++VG K V  + V ++ R
Sbjct: 550 NDYAKAVKDALFAKGLRVEIDDRAEKMGFKIREAQLEKVPYMLVVGEKEVEANAVSVRSR 609

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
             G    +S++E +        +   V+
Sbjct: 610 DKGEMGSLSVDEFVAMVCKEVEDKVNVI 637


>gi|146311380|ref|YP_001176454.1| threonyl-tRNA synthetase [Enterobacter sp. 638]
 gi|166987323|sp|A4W9M3|SYT_ENT38 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145318256|gb|ABP60403.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Enterobacter
           sp. 638]
          Length = 642

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y + + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLVRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T    +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFC-TEGQVRDEVNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------TWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F    + S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPQRLS----ASYVG 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +      +    +G++     ++     G    W   V    +++           D
Sbjct: 500 EDNERQIPVMIHRAILGSIERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVKELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + EVI        + 
Sbjct: 614 KDLGSLDVNEVIEKLRLEIRSR 635


>gi|292670652|ref|ZP_06604078.1| threonine-tRNA ligase [Selenomonas noxia ATCC 43541]
 gi|292647679|gb|EFF65651.1| threonine-tRNA ligase [Selenomonas noxia ATCC 43541]
          Length = 639

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 84/440 (19%), Positives = 157/440 (35%), Gaps = 42/440 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +  +H+   G   + P G    + +    RE   R G
Sbjct: 233 YLHMLEEAAKRDHRKLGRELDLFS--LHEEGPGFPFFHPNGMILRNALLEYWREVHRRYG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + S  LW  SG +  Y + M    + + +     P +      ++RS + SY
Sbjct: 291 YQEISTPVILSRKLWETSGHWFHYRENMYT-TEIDGEDYAIKPMNCPGCMLVYRSQLHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G+ R R F   DA+   +TP+  +         +  +
Sbjct: 350 RDLPLRLAELGLVHRHELSGALHGLFRVRNFTQDDAH-LFVTPDQIEGEIQHTINLFDEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL        + P     S E                   D          ++   
Sbjct: 409 YRTFGLSY-KAELSTRPEDSMGSDE-----------------MWDLATEGLRNALENRGL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   L DS+    +     +++     F          T+ G
Sbjct: 451 DYIVNEGDGAFYGPKIDFH---LRDSIGRTWQCGTIQLDMSLPEKFD--------LTYIG 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++    +     +P  +AP ++ ++ I    +    
Sbjct: 500 EDGEKHRPVMLHRVVYGSIERFIGILI---ENYAGAFPVWMAPVQVRILPIT---ERHTA 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E +  R+  +G  V  DD  E+ G +   + +   P  ++VG +      V ++    
Sbjct: 554 YAESLRGRMFDLGIRVEVDDRNEKTGYKIRESQVKKTPYTLVVGDQEQETGAVALRKYGE 613

Query: 424 GIREDMSLEEVINYASHRFS 443
                M+ ++ I     + +
Sbjct: 614 KDSVVMAADDFIALVQEKIA 633


>gi|313633110|gb|EFS00008.1| threonyl-tRNA synthetase [Listeria seeligeri FSL N1-067]
          Length = 485

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 168/441 (38%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R G
Sbjct: 75  FIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLG 133

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SY
Sbjct: 134 YNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSY 193

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++ +  R E+      ++    +  +     + P+  K  + ++    L ++
Sbjct: 194 RELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVY 253

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIIS 244
               +K    R                  D   T+ +   D   D       +  D++  
Sbjct: 254 KDFDIKDYSFRLS--------------YRDPKNTEKYFDDDAMWDKAQAMLKSAMDEMGM 299

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                +   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G
Sbjct: 300 DYFEADGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIG 348

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   +     G +  +   +    +     +P  +AP ++ LI + A      D 
Sbjct: 349 EDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQMELIPVNA--DAHLDY 404

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L + G  V  DD  E++G +   A     P  +++G + +    V ++   + 
Sbjct: 405 AKGVQDKLQRAGLRVEVDDRNEKLGYKIREAQTKKIPYALVLGDQEMESGTVNVRRYGSK 464

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E M L+  I+      S  
Sbjct: 465 DSETMELDTFISQVVQEVSKY 485


>gi|152970729|ref|YP_001335838.1| threonyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|330009686|ref|ZP_08306560.1| threonine--tRNA ligase [Klebsiella sp. MS 92-3]
 gi|150955578|gb|ABR77608.1| threonyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|328534774|gb|EGF61330.1| threonine--tRNA ligase [Klebsiella sp. MS 92-3]
          Length = 622

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEDQVRDE-VNACIRMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------TWDRAEADLAVALEENNI 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F    + S    A++ G
Sbjct: 431 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPQRLS----ASYVG 479

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G++     ++     G    W   V    +++           +
Sbjct: 480 ENNERQVPVMIHRAILGSLERFIGILTEEFAGFFPTWIAPVQVVVMNIT------DSQAE 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 534 YVNELTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 594 KDLGSMDVNEVIEKLQQEIRSR 615


>gi|148548433|ref|YP_001268535.1| threonyl-tRNA synthetase [Pseudomonas putida F1]
 gi|166225483|sp|A5W5E1|SYT_PSEP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148512491|gb|ABQ79351.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Pseudomonas
           putida F1]
          Length = 640

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 145/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W   G      +   +R  Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKQLDLF--HLQEEAPGMVFWHANGWTVYQVLEQYMRGVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG + +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQVVDRILWERSGHWSNYAENMFT-TSSESRDYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +  K +        L +
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIFCTEEQVKKEA-ADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E    A+T                 +     ++   
Sbjct: 407 YKDFGFSDIAMKLSTRPAKRVGSEELWDRAET-----------------ALADALNESGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L  N +      +              + A++  
Sbjct: 450 EWEYQPGEGAFYGPKIEF---TLRDCLGRNWQCGTLQYDPNLP--------ERLDASYIA 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D      V +    +G+      ++    +    ++P  +AP +  ++NI        D
Sbjct: 499 EDNSRVRPVMLHRAILGSFERFIGMLI---EHYAGVFPAWLAPTQAVIMNITDK---QTD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L+  G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKSLNGSGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVETQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + + +   +   S  
Sbjct: 613 ADLGSMPVAQFVELLTQAVSRR 634


>gi|225849423|ref|YP_002729587.1| threonyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644143|gb|ACN99193.1| threonyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 641

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 154/444 (34%), Gaps = 41/444 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L +L+E   RD      +L L   MI  +   G+  WLP G      +    +EE  + 
Sbjct: 235 YLNMLEEAKKRDHRKIGKELELF--MIDEEVGGGLAIWLPKGAIIRKEIEDAWKEEHLKR 292

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +    LW  SG    Y + M       ++     P +     +I++S  +S
Sbjct: 293 GYQLVYTPHVGKEHLWQTSGHLSFYQENMYPRMQIEEEGYYVKPMNCPFHVEIYKSKQRS 352

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y+ LP    ++   +R E      G+MR R F   DA+      +        +    L 
Sbjct: 353 YKELPIRLAELGTVYRYERSGALHGLMRVRGFTQDDAHIICREDQVEDE-IRDVLNFALD 411

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                G     +   + P                           +    S     +   
Sbjct: 412 TLKSYGFDEFEIYLSTRPEKS-----------------VGDDRMWEVATQSLRKAIESTG 454

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    DV   K+ D++    + S    +    F    ++ +     + 
Sbjct: 455 IDYKIDEGGGAFYGPKIDV---KIKDAIGRMWQCSTIQFD----FNLPQRFDMY----YI 503

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G D + H    +     G++     V+   + G   +W   ++P ++ +I I        
Sbjct: 504 GEDNQRHRPYMIHRAIFGSIERFIGVLLEHYAGFLPVW---LSPVQVKIIPIADKH---L 557

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+   L +    V  DD  E++  +   A+L   P  +++G K V ++ V ++ + 
Sbjct: 558 DFANKVKDILLQNKVRVEVDDRSERMNKKIRDAELQKIPFMLVIGDKEVENNSVAVREKA 617

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           +G  E M+++  +   +      +
Sbjct: 618 SGKTESMTVDNFVKKITSLIKEKK 641


>gi|224499783|ref|ZP_03668132.1| threonyl-tRNA synthetase [Listeria monocytogenes Finland 1988]
          Length = 640

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 166/441 (37%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R G
Sbjct: 230 FIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SY
Sbjct: 289 YNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++ +  R E+      ++    +  +     + P+  K  + ++    L ++
Sbjct: 349 RELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
               +     R                  D   T+ +   D M     +   +  D++  
Sbjct: 409 KDFDITDYSFRLS--------------YRDPKNTEKYFDDDAMWEKAQAMLKSAMDEMEM 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G
Sbjct: 455 DYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIG 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   +     G +  +   +    +     +P  +AP ++ +I + A      D 
Sbjct: 504 EDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQMEIIPVNA--DAHLDY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L + G     DD  E++G +   A     P  +++G + V    V ++   + 
Sbjct: 560 AKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRYGSK 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E M L+  I       S  
Sbjct: 620 DSETMDLDAFIAQVVAEVSKY 640


>gi|113867357|ref|YP_725846.1| threonyl-tRNA synthetase [Ralstonia eutropha H16]
 gi|123134164|sp|Q0KBZ3|SYT_RALEH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113526133|emb|CAJ92478.1| Threonyl-tRNA synthetase [Ralstonia eutropha H16]
          Length = 635

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 147/444 (33%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD       L L    + + + G+  W P G +    V   +R     
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKTLDLF--HLQEEAPGMVFWHPKGWQVWQAVEQYMRGRLTD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG + +Y + M  + +   +     P +      IF   ++
Sbjct: 287 AGYDEVRTPQVMDRSLWEKSGHWQNYKENMF-VTESEKRDYAIKPMNCPGHVQIFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F    +    +         
Sbjct: 346 SYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIFCTEEQIVAEA-KAFNELAF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G K + ++    P     S E    A+ G      +       +P E       
Sbjct: 405 SVYDDFGFKDVKVKLSLRPDQRAGSDEIWDHAEEGLRLALRACGVDWEELPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   + D++  + +     +++             + A +
Sbjct: 458 ----------GAFYGPKVEYH---IKDAIGRSWQCGTLQLDLVLP--------ERLDAEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G+      ++  +H G    W        +++          
Sbjct: 497 VSEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPAWLAPEQVVVMNIA------DSQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E +   L K G     D   E+I  +     L   P  ++VG K    S+V ++ R
Sbjct: 551 AEYAESVVQLLQKQGFRAKADLRNEKITYKIREHSLQKVPYLLVVGDKERDASQVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M +   +    +  ++ 
Sbjct: 611 GNVDLGVMPVSAFVERLKNDVASK 634


>gi|82543879|ref|YP_407826.1| threonyl-tRNA synthetase [Shigella boydii Sb227]
 gi|187734126|ref|YP_001880509.1| threonyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|123769450|sp|Q321L0|SYT_SHIBS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238689503|sp|B2U397|SYT_SHIB3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81245290|gb|ABB65998.1| threonine tRNA synthetase [Shigella boydii Sb227]
 gi|187431118|gb|ACD10392.1| threonyl-tRNA synthetase [Shigella boydii CDC 3083-94]
          Length = 642

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KDLGSMDVNEVIEKLQQEIRSR 635


>gi|254828206|ref|ZP_05232893.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
 gi|258600595|gb|EEW13920.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
          Length = 640

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 166/441 (37%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R G
Sbjct: 230 FIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SY
Sbjct: 289 YNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++ +  R E+      ++    +  +     + P+  K  + ++    L ++
Sbjct: 349 RELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
               +     R                  D   T+ +   D M     +   +  D++  
Sbjct: 409 KDFDITDYSFRLS--------------YRDPKNTEKYFDDDAMWEKAQAMLKSAMDEMEM 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G
Sbjct: 455 DYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIG 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   +     G +  +   +    +     +P  +AP ++ LI + A      D 
Sbjct: 504 EDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQMELIPVNA--DAHLDY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L + G     DD  E++G +   A     P  +++G + V    V ++   + 
Sbjct: 560 AKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRYGSK 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E M L+  I       S  
Sbjct: 620 DSETMDLDAFIAQVVAEVSKY 640


>gi|188996057|ref|YP_001930308.1| threonyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|229558457|sp|B2V6M2|SYT_SULSY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188931124|gb|ACD65754.1| threonyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 643

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 150/442 (33%), Gaps = 39/442 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L   +  +   G+  WLP G      +    ++E  + G
Sbjct: 235 YLNMLEEAKKRDHRKIGKDLELFL-IDEEIGGGLAIWLPKGAIIRKEIEDAWKKEHLKRG 293

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +    LW  SG    Y + M       ++     P +     +I++S  +SY
Sbjct: 294 YQLVYTPHVGKEQLWQTSGHLSFYQENMYPRMQIEEEGYYVKPMNCPFHVEIYKSKQRSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +  P    ++   +R E      G+MR R F   DA+      +                
Sbjct: 354 KEFPIRLAELGTVYRYERSGALHGLMRVRGFTQDDAHIICREDQVEDEIREV-------- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     +      +      EF V   T   +        +    S     +    
Sbjct: 406 ----------LNLALNTLKSYGFDEFEVYLSTKPEKYVGDDKMWEVAENSLRKAIESTGL 455

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I +   A Y    DV   K+ D++    + S    +    F    ++ +     + G
Sbjct: 456 DYKIDDGGGAFYGPKIDV---KIKDAIGRLWQCSTIQFD----FNLPERFDMY----YIG 504

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D + H    +     G++     V+   + G   +W   ++P ++ +I I        +
Sbjct: 505 EDNQKHRPYMIHRAIFGSIERFIGVLLEHYAGFLPVW---LSPVQVKIIPIADKH---LE 558

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E +  +L +    V  DD  E++  +   A+L   P  ++VG K      V ++ +  
Sbjct: 559 YAETVKQKLLENDIRVELDDRNERMNKKIRDAELQKIPFMLVVGDKEAETGTVAVREKGK 618

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              + +S++E ++      SN 
Sbjct: 619 QGSQTLSIDEFVSKIKEIISNK 640


>gi|16803599|ref|NP_465084.1| threonyl-tRNA synthetase [Listeria monocytogenes EGD-e]
 gi|224501501|ref|ZP_03669808.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL R2-561]
 gi|22654119|sp|Q8Y6X2|SYT_LISMO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|16410988|emb|CAC99637.1| threonyl-tRNA synthetase [Listeria monocytogenes EGD-e]
          Length = 640

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 166/441 (37%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R G
Sbjct: 230 FIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SY
Sbjct: 289 YNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++ +  R E+      ++    +  +     + P+  K  + ++    L ++
Sbjct: 349 RELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
               +     R                  D   T+ +   D M     +   +  D++  
Sbjct: 409 KDFDITDYSFRLS--------------YRDPKNTEKYFDDDAMWEKAQAMLKSAMDEMEM 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G
Sbjct: 455 DYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIG 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   +     G +  +   +    +     +P  +AP ++ +I + A      D 
Sbjct: 504 EDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQMEIIPVNA--DAHLDY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L + G     DD  E++G +   A     P  +++G + V    V ++   + 
Sbjct: 560 AKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRYGSK 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E M L+  I       S  
Sbjct: 620 DSETMDLDAFIAQVVAEVSKY 640


>gi|294649364|ref|ZP_06726795.1| threonine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824734|gb|EFF83506.1| threonine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 640

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG   +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQIVDFTLWEKSGHAANYAENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  +          L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTKEQIGQE-VADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P                           D    S     DD   
Sbjct: 407 YKDFGFEEVQMKLSTRPEKR-----------------VGDDALWDIAEKSLADALDDAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +      +                A++  
Sbjct: 450 AWDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQCDFNLPIRLD--------ASYVT 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +      +    +G+      ++    +      P  +AP +  ++NI        D
Sbjct: 499 EDNERDQPVMLHRAILGSFERFIGILI---EHYAGFMPPWLAPIQACVMNITDS---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           ACE++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R  
Sbjct: 553 ACEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS++  I+      +  
Sbjct: 613 KNLGTMSIDAFIDLVKSAVAER 634


>gi|285017864|ref|YP_003375575.1| threonyl-tRNA synthetase (threonine--tRNA ligase) protein
           [Xanthomonas albilineans GPE PC73]
 gi|283473082|emb|CBA15587.1| probable threonyl-trna synthetase (threonine--trna ligase) protein
           [Xanthomonas albilineans]
          Length = 634

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 144/438 (32%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD    +  L L    + +   G+  W P G      V   +R+     G
Sbjct: 232 YILRMEEADKRDHRKIAKALDLF--HLQEEGPGLVFWHPKGWSIWQVVEQYMRKVYRDNG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQQSGHWDNYQDNMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F  T +  +          L++
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHIFC-TEQQIEAEVTAFHRQALKV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P                           D    +          
Sbjct: 408 YTDFGFDDIQIKIALRPEKR-----------------LGEDATWDKAEAALRAALGACGV 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L D++    ++    ++       G        A +  
Sbjct: 451 EWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 499

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               K H V +    +G+M     ++    +    ++P  +AP +  ++NI        D
Sbjct: 500 EHSQKRHPVMLHRAIVGSMERFIGILI---EHHAGVFPAWLAPVQAMVMNIT---DAQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  +  D   E+IG +     L   P  ++VG +   +  + ++ R  
Sbjct: 554 YVDSVRKLLANQGFRIEADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAIAVRTRSG 613

Query: 424 GIREDMSLEEVINYASHR 441
                MS+ +        
Sbjct: 614 EDLGTMSVADFAERLRAE 631


>gi|319778289|ref|YP_004129202.1| Threonyl-tRNA synthetase [Taylorella equigenitalis MCE9]
 gi|317108313|gb|ADU91059.1| Threonyl-tRNA synthetase [Taylorella equigenitalis MCE9]
          Length = 646

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 145/443 (32%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           KY   + +   RD      +L L        + G+  W P G      V   +R+     
Sbjct: 235 KYLTMLEEAEKRDHRKLGKELDLF--HFQDEAPGLIFWHPKGWTIWQQVEQFMRKVYVEN 292

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    LW ++G +D+Y + M       ++     P +      I+ S + S
Sbjct: 293 GYQEIKAPQILDLGLWKKTGHWDNYKENMFT-TQSENREYGLKPMNCPGHVQIYNSTLHS 351

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  + +     R+E      G+MR R F   D + F    +              +
Sbjct: 352 YRELPIRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIFCTEDQLLAECLAFT-ALLQK 410

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   +  +  + P     + E    A+    +            P E        
Sbjct: 411 VYKEFGFTEVLYKIATRPEKRIGADEIWDKAEKALMESLKQSGCEFEISPGE-------- 462

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y    +     L D++  + +     ++       G        A + 
Sbjct: 463 ---------GAFYGPKIEY---TLKDAIGRHWQCGTIQVDFSMPARLG--------AEYV 502

Query: 304 G-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              D +   V +    +G++     ++    +      P  ++P  + +  I    +   
Sbjct: 503 DADDTRKTPVMLHRAILGSLERFIGMLI---ENYSGAMPPWLSPEHVVVCPI---SEAFN 556

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++  +L++    V  D   E+I  +     +   P  ++VG K  S S V ++ R 
Sbjct: 557 DYALEVQTKLNQK-FRVKVDLRNEKITKKIRENSMQKIPYILVVGEKERSSSSVAVRARG 615

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 +++++ I    +   N 
Sbjct: 616 NIDLGVLTVDDFIARLQNEIDNK 638


>gi|77164649|ref|YP_343174.1| threonyl-tRNA synthetase, class IIA [Nitrosococcus oceani ATCC
           19707]
 gi|123757888|sp|Q3JC02|SYT_NITOC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|76882963|gb|ABA57644.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Nitrosococcus
           oceani ATCC 19707]
          Length = 644

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 161/441 (36%), Gaps = 39/441 (8%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKG-IYSWLPLGQKALDNVNAIIRE 59
           +  K +L  L+E   RD       L L +  I + + G +  W P+G +    +    +E
Sbjct: 226 KALKAYLHRLEEAEKRDHRRIGADLDLFS--IQEEAGGGLVFWHPMGARIRRVIEDFWQE 283

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                G   +  P +   +LW  SG  D Y + M +  + + +     P +      I++
Sbjct: 284 RHTAAGYEMLYTPHIAHEELWQTSGHTDFYRESMYQPMEDDHQLYQLKPMNCPFHVLIYQ 343

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             ++SYR LP  + ++   +R E+     G+MR R F   DA+ F    +        + 
Sbjct: 344 GRLRSYRELPIRWAELGTVYRHEMSGALHGLMRVRGFTQDDAHIFCREEQIENE-ILGIL 402

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    G     +   + P                       +   +    +  + 
Sbjct: 403 DLTLEMLAAFGFDRYEIDLSTRPEKS-----------------VGPEAIWEQATQALRSA 445

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            D      ++ E   A Y    D+   K+ D++    + S   ++    F    ++++  
Sbjct: 446 LDKKGLDYAVDEGGGAFYGPKIDI---KIEDAIGRKWQCSTVQLD----FNLPERFAMEY 498

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A       +   + +    +G++     V+   ++     +P  +AP ++ +++I    
Sbjct: 499 VAE---DGARHRPIMIHRAVLGSLERFFGVLIEHYE---GKFPPWLAPVQVVVMSITDRQ 552

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++   +   G     D   E+IG +     L   P  +++G + V++  V +
Sbjct: 553 EG---YARQVEEAMRNKGFRSLLDLRNEKIGFKIREHILRRIPYLLVIGDREVANQTVAV 609

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           + R +     MSL+  + + S
Sbjct: 610 RTRYSQDLGAMSLDAFMEHLS 630


>gi|26989188|ref|NP_744613.1| threonyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|38258320|sp|Q88K27|SYT_PSEPK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|24984027|gb|AAN68077.1|AE016439_12 threonyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|313499446|gb|ADR60812.1| ThrS [Pseudomonas putida BIRD-1]
          Length = 640

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 145/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W   G      +   +R  Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKQLDLF--HLQEEAPGMVFWHANGWTVYQVLEQYMRGVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG + +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQVVDRILWERSGHWSNYAENMFT-TSSESRDYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +  K +        L +
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIFCTEDQVKKEA-ADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E    A+T                 +     ++   
Sbjct: 407 YKDFGFSDIAMKLSTRPAKRVGSEELWDRAET-----------------ALADALNESGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L  N +      +              + A++  
Sbjct: 450 EWEYQPGEGAFYGPKIEF---TLRDCLGRNWQCGTLQYDPNLP--------ERLDASYIA 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D      V +    +G+      ++    +    ++P  +AP +  ++NI        D
Sbjct: 499 EDNSRVRPVMLHRAILGSFERFIGMLI---EHYAGVFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L+  G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKSLNGSGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVETQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + + +   +   S  
Sbjct: 613 ADLGSMPVAQFVELLTQAVSRR 634


>gi|288959315|ref|YP_003449656.1| threonyl-tRNA synthetase [Azospirillum sp. B510]
 gi|288911623|dbj|BAI73112.1| threonyl-tRNA synthetase [Azospirillum sp. B510]
          Length = 650

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 151/438 (34%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G   W P G      +   IR +     
Sbjct: 235 YLHQIEEAEKRDHRKLGKELDLF--HVQEEAVGSVFWHPKGWTLYRTLETYIRTKLKAAD 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
            +E+  P L  + L+  SG +D YG  M ++  D  +K +   P +      IFR+ ++S
Sbjct: 293 YVEVKTPQLIDSSLFKASGHWDMYGDNMFKVEADGGEKLLGIKPMNCPGHVQIFRNGLRS 352

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R+E      G+MR R F   DA+ F    +    +     +  L 
Sbjct: 353 YRDLPIRMAEFGACHRNEPSGALHGIMRVRAFTQDDAHIFCTEDQVQSEAAEYFKLQ-LG 411

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++  LG   I ++    P     + E                   D    +      D  
Sbjct: 412 VYKDLGFDQISVKLALRPDVRTGADE-----------------LWDRAEGALAQALRDAG 454

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                +    A Y    + H   L D++    +      +              + A++ 
Sbjct: 455 LEYEELPGEGAFYGPKVEFH---LTDAIGRTWQCGTLQYDPNLP--------ERLDASYI 503

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG  H    +    +G+M     ++   + GK  +W   V     ++           
Sbjct: 504 GEDGARHRPIMLHRAILGSMERFIGMLIEHYAGKFPLWLSPVQVTVATIT------SEAD 557

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++   L + G  V  D   E+I  +     L   PL ++VG +   +  V ++   
Sbjct: 558 DYAVEVAKLLKRKGLRVELDTRNEKINLKVREHSLQKVPLMLVVGKREAEERTVALRVLG 617

Query: 423 TGIREDMSLEEVINYASH 440
              +E ++L++ +     
Sbjct: 618 GKDQEILALDDAVAKLIE 635


>gi|300691315|ref|YP_003752310.1| threonine tRNA synthetase [Ralstonia solanacearum PSI07]
 gi|299078375|emb|CBJ51025.1| threonine tRNA synthetase [Ralstonia solanacearum PSI07]
          Length = 635

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 145/444 (32%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    + + + G+  W P G +    V   +R   + 
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HLQEEAPGMVFWHPKGWEIWQAVEQYMRGRLSN 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG + +Y + M  + +   +     P +      IF   ++
Sbjct: 287 AGYREVRTPQVMDRTLWEHSGHWQNYKENMF-VTESEKREYAIKPMNCPGHVQIFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T                
Sbjct: 346 SYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIFC-TEGQIMAEARDFNDLAF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G +++ ++    P                      + D  D       T     
Sbjct: 405 SVYEDFGFENVAVKLALRPDKR-----------------AGTDDIWDHAEEGLRTALRAC 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                 +    A Y    + H   + D++  + +     +++      G        A +
Sbjct: 448 GVEWEELPGEGAFYGPKVEYH---IKDAIGRSWQCGTLQLDLVLPERLG--------AEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G+      ++  +H G   +W        +S+          
Sbjct: 497 VAEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPLWLAPEQVVVMSIA------DAH 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G     D   E+I  +     L   P  V+VG K    ++V ++ R
Sbjct: 551 AEYAQSVAQSLQKQGFRASADLRNEKITYKIREHSLQKVPYLVVVGDKERDGNQVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M +   +    +  +N 
Sbjct: 611 GNVDLGSMPVSAFVERLQNDLANK 634


>gi|82777067|ref|YP_403416.1| threonyl-tRNA synthetase [Shigella dysenteriae Sd197]
 gi|123755748|sp|Q32FI0|SYT_SHIDS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81241215|gb|ABB61925.1| threonine tRNA synthetase [Shigella dysenteriae Sd197]
          Length = 642

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           D
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KELGSMDVNEVIEKLQQEIRSR 635


>gi|154502817|ref|ZP_02039877.1| hypothetical protein RUMGNA_00631 [Ruminococcus gnavus ATCC 29149]
 gi|153796700|gb|EDN79120.1| hypothetical protein RUMGNA_00631 [Ruminococcus gnavus ATCC 29149]
          Length = 642

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 159/442 (35%), Gaps = 42/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L   M+     G   +LP G    + +    RE   + G
Sbjct: 230 YLNMLEEAKKRDHRKLGKELGLF--MMRDEGPGFPFFLPNGMVLKNVLLDYWREIHRKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + S  LW  SG +D Y + M      +++     P +       +++  +SY
Sbjct: 288 YVEISTPVMLSRHLWETSGHWDHYKENMYT-TVIDEEDFAIKPMNCPGGILAYQAEPRSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E   +  G+MR R F   DA+ F    +       K     +  
Sbjct: 347 RDLPIRMGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMTPDQIKDE--IKGVAGLINE 404

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            + L      +   + P     S E                   +    +     DD+  
Sbjct: 405 VYSLFGFKYHVELSTRPEDSMGSDE-----------------DWEMATDALRGALDDLGL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H E   DS+    +     ++    F    ++       + G
Sbjct: 448 PYVVNEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQLPLRF----ELEYTG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++     G    W   +AP ++ ++ I        +
Sbjct: 497 ADGEKHRPIMIHRVVFGSIERFIGILIEHFAGAFPTW---LAPVQVKVLPISDK---YLE 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +  +L+  G     D   E+IG +   A +   P  ++VG+K   + KV ++ R  
Sbjct: 551 YGQSVLDQLNAAGIRAEIDTRAEKIGYKIREAQMKKIPYMLVVGAKEEEEKKVSVRSRFA 610

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G      LEE I       +  
Sbjct: 611 GDEGQKGLEEFIAAIMEETAKK 632


>gi|312898595|ref|ZP_07757985.1| threonyl-tRNA synthetase [Megasphaera micronuciformis F0359]
 gi|310620514|gb|EFQ04084.1| threonyl-tRNA synthetase [Megasphaera micronuciformis F0359]
          Length = 635

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 88/449 (19%), Positives = 160/449 (35%), Gaps = 42/449 (9%)

Query: 2   RRSKY--FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S    +L + +E  R D      ++ L +   H+   G   + P G      +     
Sbjct: 224 KQSSLDEYLKLREEAERRDHRKLGKEMDLFS--FHEEGPGFPFFHPKGMLLRQTLLKFWN 281

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           E  +R    ++S P + +  LW +SG +D Y + M      +D+     P +      ++
Sbjct: 282 ELHDRYEYDQISTPIILNRQLWEQSGHWDHYRENM-YFTTIDDEPYAIKPMNCPGGILVY 340

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +S++ SYR+ P    ++ L  R EL     G+ R R F   DA+ F L P   K     +
Sbjct: 341 KSNVHSYRDFPMRTAELGLVHRHELHGALHGLFRVRSFTQDDAHIFML-PSQMKKEITGV 399

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              +   +   GL    +   + P     S E                   D    +   
Sbjct: 400 LDLFDEAYKMFGLPYH-VELSTRPENSMGSDE-----------------IWDLATQTLKE 441

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             ++      I E   A Y    D H   + DS+        R  + G I          
Sbjct: 442 AIEEKGVPYQINEGDGAFYGPKLDFH---VKDSIG-------RTWQCGTI-QLDMLMPER 490

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              T+ G DG+ H   M          +   I    +     +P  +AP ++ ++ I   
Sbjct: 491 FDMTYVGEDGQKHRPVMVHRAC--FGSIERFIGILIEHYAGAFPVWLAPTQVKILPI--- 545

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D   ++  +  K G  V  D+  E+IG +   A +   P   ++G K V +  V 
Sbjct: 546 SEKQMDYAVELRKKFKKAGIRVELDESNEKIGYKIRKAQMEKVPYMCVIGEKEVQEQTVS 605

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ R  G     +++E I +      + +
Sbjct: 606 VRDRSQGDLGSRNVDEFIAHIQELSESRK 634


>gi|237731269|ref|ZP_04561750.1| threonyl-tRNA synthetase [Citrobacter sp. 30_2]
 gi|226906808|gb|EEH92726.1| threonyl-tRNA synthetase [Citrobacter sp. 30_2]
          Length = 642

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDE-VNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEFQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 ENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + EVI        + 
Sbjct: 614 KDLGSLDVNEVIEKLQQEIRSR 635


>gi|324119204|gb|EGC13092.1| threonyl-tRNA synthetase [Escherichia coli E1167]
          Length = 642

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KDLGSMDVNEVIEKLQQEIRSR 635


>gi|193065767|ref|ZP_03046830.1| threonyl-tRNA synthetase [Escherichia coli E22]
 gi|194428543|ref|ZP_03061082.1| threonyl-tRNA synthetase [Escherichia coli B171]
 gi|218554286|ref|YP_002387199.1| threonyl-tRNA synthetase [Escherichia coli IAI1]
 gi|260844071|ref|YP_003221849.1| threonyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|260855585|ref|YP_003229476.1| threonyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|260868246|ref|YP_003234648.1| threonyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|293446093|ref|ZP_06662515.1| threonyl-tRNA synthetase [Escherichia coli B088]
 gi|331668404|ref|ZP_08369252.1| threonine--tRNA ligase [Escherichia coli TA271]
 gi|331677592|ref|ZP_08378267.1| threonine--tRNA ligase [Escherichia coli H591]
 gi|226701402|sp|B7M1C7|SYT_ECO8A RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|192926539|gb|EDV81170.1| threonyl-tRNA synthetase [Escherichia coli E22]
 gi|194413421|gb|EDX29704.1| threonyl-tRNA synthetase [Escherichia coli B171]
 gi|195182909|dbj|BAG66479.1| threonyl-tRNA synthetase [Escherichia coli O111:H-]
 gi|218361054|emb|CAQ98632.2| threonyl-tRNA synthetase [Escherichia coli IAI1]
 gi|257754234|dbj|BAI25736.1| threonyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|257759218|dbj|BAI30715.1| threonyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|257764602|dbj|BAI36097.1| threonyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|291322923|gb|EFE62351.1| threonyl-tRNA synthetase [Escherichia coli B088]
 gi|323153043|gb|EFZ39312.1| threonyl-tRNA synthetase [Escherichia coli EPECa14]
 gi|331063598|gb|EGI35509.1| threonine--tRNA ligase [Escherichia coli TA271]
 gi|331074052|gb|EGI45372.1| threonine--tRNA ligase [Escherichia coli H591]
          Length = 642

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KDLGSMDVNEVIEKLQQEIRSR 635


>gi|16764684|ref|NP_460299.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167991842|ref|ZP_02572941.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168244449|ref|ZP_02669381.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194448321|ref|YP_002045340.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197262906|ref|ZP_03162980.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|22654123|sp|Q8ZPS9|SYT_SALTY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690646|sp|B4TGH1|SYT_SALHS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|16419852|gb|AAL20258.1| threonine tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|194406625|gb|ACF66844.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197241161|gb|EDY23781.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205329759|gb|EDZ16523.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205336802|gb|EDZ23566.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|261246542|emb|CBG24352.1| ThrRS [Salmonella enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267993213|gb|ACY88098.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157870|emb|CBW17364.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912318|dbj|BAJ36292.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321223961|gb|EFX49024.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323129604|gb|ADX17034.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332988221|gb|AEF07204.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 642

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDE-VNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPDKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + +VI        + 
Sbjct: 614 KDLGSLDVNDVIEKLQQEIRSR 635


>gi|161614260|ref|YP_001588225.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|194446059|ref|YP_002040590.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|198243456|ref|YP_002215793.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|207857160|ref|YP_002243811.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|189083620|sp|A9N243|SYT_SALPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690315|sp|B5FJA8|SYT_SALDC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690400|sp|B5QVW8|SYT_SALEP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238693615|sp|B4T4M8|SYT_SALNS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161363624|gb|ABX67392.1| hypothetical protein SPAB_02005 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404722|gb|ACF64944.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|197937972|gb|ACH75305.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|206708963|emb|CAR33293.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 642

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDE-VNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPDKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + +VI        + 
Sbjct: 614 KDLGSLDVNDVIEKLQQEIRSR 635


>gi|43066|emb|CAA23560.1| unnamed protein product [Escherichia coli]
          Length = 642

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KDLGSMDVNEVIEKLQQEIRSR 635


>gi|303257521|ref|ZP_07343533.1| threonine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|331000214|ref|ZP_08323898.1| threonine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
 gi|302859491|gb|EFL82570.1| threonine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|329572380|gb|EGG54033.1| threonine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
          Length = 641

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 150/444 (33%), Gaps = 39/444 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L      + + G+  W   G      V   +R       
Sbjct: 231 YLHMLEEAEKRDHRRLGKELDLF--HFQEEAPGLIFWHARGWALWQQVEQYMRRVYQDND 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW +SG +  Y + M    +  ++     P +      IF S ++SY
Sbjct: 289 YQEVKAPQLLDRSLWEKSGHWSKYKENMFT-TESENRYYALKPMNCPGHIQIFNSAVRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F   D + F    +              ++
Sbjct: 348 RDLPIRYGEFGACHRNEPSGSLHGLMRVRGFTQDDGHIFCTEDQILSECTAYT-KLVQKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  +  + P                           D    +     D    
Sbjct: 407 YADYGFTDISYKIATRPEKR-----------------IGDDATWDKAEKALMDALDASGI 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I+    A Y    + H   L DSL    +     ++       G +Y          
Sbjct: 450 KYDILPGEGAFYGPKIEYH---LRDSLGRGWQCGTIQVDFQMPARLGAEY-------VTE 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           ++G+   V +    +G++     ++    +      P  +AP ++++ NI        D 
Sbjct: 500 SNGRATPVMLHRAIVGSLERFIGMLL---EHYAGQLPPWLAPVQVAVANIT---DDQADY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++ + L K G     D    +I  +     L   P  ++VG+K  ++ KV ++ R   
Sbjct: 554 AKEVVSMLKKAGLRAEADLRNGKITYKIRELSLQKLPYILVVGAKEKAEGKVAVRVRGGK 613

Query: 425 IREDMSLEEVINYASHRFSNNRPV 448
               MS+E+ I       +  R V
Sbjct: 614 DLGAMSVEDFIKLVQEDVATRRNV 637


>gi|157158126|ref|YP_001463015.1| threonyl-tRNA synthetase [Escherichia coli E24377A]
 gi|157161181|ref|YP_001458499.1| threonyl-tRNA synthetase [Escherichia coli HS]
 gi|170019932|ref|YP_001724886.1| threonyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|193068904|ref|ZP_03049863.1| threonyl-tRNA synthetase [Escherichia coli E110019]
 gi|209919078|ref|YP_002293162.1| threonyl-tRNA synthetase [Escherichia coli SE11]
 gi|218695280|ref|YP_002402947.1| threonyl-tRNA synthetase [Escherichia coli 55989]
 gi|256018088|ref|ZP_05431953.1| threonyl-tRNA synthetase [Shigella sp. D9]
 gi|332279130|ref|ZP_08391543.1| threonyl-tRNA synthetase [Shigella sp. D9]
 gi|166987321|sp|A7ZMI6|SYT_ECO24 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166987322|sp|A8A0R2|SYT_ECOHS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083607|sp|B1IPK9|SYT_ECOLC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238065113|sp|B6IBD7|SYT_ECOSE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783522|sp|B7L6J2|SYT_ECO55 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157066861|gb|ABV06116.1| threonyl-tRNA synthetase [Escherichia coli HS]
 gi|157080156|gb|ABV19864.1| threonyl-tRNA synthetase [Escherichia coli E24377A]
 gi|169754860|gb|ACA77559.1| threonyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|192957699|gb|EDV88143.1| threonyl-tRNA synthetase [Escherichia coli E110019]
 gi|209912337|dbj|BAG77411.1| threonyl-tRNA synthase [Escherichia coli SE11]
 gi|218352012|emb|CAU97745.1| threonyl-tRNA synthetase [Escherichia coli 55989]
 gi|320197902|gb|EFW72510.1| Threonyl-tRNA synthetase [Escherichia coli EC4100B]
 gi|323948091|gb|EGB44082.1| threonyl-tRNA synthetase [Escherichia coli H120]
 gi|324016472|gb|EGB85691.1| threonyl-tRNA synthetase [Escherichia coli MS 117-3]
 gi|332101482|gb|EGJ04828.1| threonyl-tRNA synthetase [Shigella sp. D9]
          Length = 642

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           D
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KDLGSMDVNEVIEKLQQEIRSR 635


>gi|301303993|ref|ZP_07210111.1| threonyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|300840790|gb|EFK68550.1| threonyl-tRNA synthetase [Escherichia coli MS 124-1]
          Length = 429

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 19  YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 76

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 77  YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 135

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 136 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 194

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 195 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 237

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 238 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 286

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           D
Sbjct: 287 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSD 340

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 341 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 400

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 401 KDLGSMDVNEVIEKLQQEIRSR 422


>gi|16760562|ref|NP_456179.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141677|ref|NP_805019.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|167552305|ref|ZP_02346058.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168239001|ref|ZP_02664059.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168821978|ref|ZP_02833978.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194736705|ref|YP_002114350.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197251550|ref|YP_002146704.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|200390235|ref|ZP_03216846.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204927743|ref|ZP_03218944.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|213423451|ref|ZP_03356434.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213426331|ref|ZP_03359081.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213852224|ref|ZP_03381756.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|238910851|ref|ZP_04654688.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|22654121|sp|Q8Z6I2|SYT_SALTI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690055|sp|B5F7G2|SYT_SALA4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238693694|sp|B4TUF0|SYT_SALSV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|25292951|pir||AC0706 threonine-tRNA ligase (EC 6.1.1.3) - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502858|emb|CAD02020.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137305|gb|AAO68868.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|194712207|gb|ACF91428.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197215253|gb|ACH52650.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197288252|gb|EDY27637.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|199602680|gb|EDZ01226.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204323085|gb|EDZ08281.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205323017|gb|EDZ10856.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205341550|gb|EDZ28314.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320086187|emb|CBY95961.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|322620023|gb|EFY16896.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622333|gb|EFY19178.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627857|gb|EFY24647.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633045|gb|EFY29788.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636709|gb|EFY33412.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322641265|gb|EFY37906.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645254|gb|EFY41783.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650195|gb|EFY46609.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655769|gb|EFY52071.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660095|gb|EFY56334.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665338|gb|EFY61526.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669596|gb|EFY65744.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673522|gb|EFY69624.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322677448|gb|EFY73512.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322679887|gb|EFY75926.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687359|gb|EFY83331.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192477|gb|EFZ77707.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198668|gb|EFZ83769.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204096|gb|EFZ89110.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208715|gb|EFZ93653.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210228|gb|EFZ95127.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217691|gb|EGA02406.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220245|gb|EGA04700.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323223489|gb|EGA07815.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229493|gb|EGA13616.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323232716|gb|EGA16812.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240245|gb|EGA24289.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242767|gb|EGA26788.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249083|gb|EGA33002.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323254416|gb|EGA38233.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255600|gb|EGA39356.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260123|gb|EGA43748.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267113|gb|EGA50598.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271563|gb|EGA54984.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 642

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDE-VNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPDKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + +VI        + 
Sbjct: 614 KDLGSLDVNDVIEKLQQEIRSR 635


>gi|168233251|ref|ZP_02658309.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472380|ref|ZP_03078364.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194458744|gb|EDX47583.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205332671|gb|EDZ19435.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 642

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDE-VNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPDKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + +VI        + 
Sbjct: 614 KDLGSLDVNDVIEKLQQEIRSR 635


>gi|62179922|ref|YP_216339.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|168263848|ref|ZP_02685821.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463268|ref|ZP_02697199.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|73919823|sp|Q57PV3|SYT_SALCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|62127555|gb|AAX65258.1| threonine tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|195634423|gb|EDX52775.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205347615|gb|EDZ34246.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|322714388|gb|EFZ05959.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 642

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDE-VNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPDKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + +VI        + 
Sbjct: 614 KDLGSLDVNDVIEKLQQEIRSR 635


>gi|16129675|ref|NP_416234.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24112885|ref|NP_707395.1| threonyl-tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|26247970|ref|NP_754010.1| threonyl-tRNA synthetase [Escherichia coli CFT073]
 gi|30063014|ref|NP_837185.1| threonyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|74311961|ref|YP_310380.1| threonyl-tRNA synthetase [Shigella sonnei Ss046]
 gi|89108559|ref|AP_002339.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr. W3110]
 gi|91210933|ref|YP_540919.1| threonyl-tRNA synthetase [Escherichia coli UTI89]
 gi|110641840|ref|YP_669570.1| threonyl-tRNA synthetase [Escherichia coli 536]
 gi|110805471|ref|YP_688991.1| threonyl-tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|117623893|ref|YP_852806.1| threonyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|170081377|ref|YP_001730697.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|170680212|ref|YP_001743530.1| threonyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|188492265|ref|ZP_02999535.1| threonyl-tRNA synthetase [Escherichia coli 53638]
 gi|191171752|ref|ZP_03033299.1| threonyl-tRNA synthetase [Escherichia coli F11]
 gi|194435142|ref|ZP_03067376.1| threonyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|194438580|ref|ZP_03070669.1| threonyl-tRNA synthetase [Escherichia coli 101-1]
 gi|215486938|ref|YP_002329369.1| threonyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|218558588|ref|YP_002391501.1| threonyl-tRNA synthetase [Escherichia coli S88]
 gi|218689663|ref|YP_002397875.1| threonyl-tRNA synthetase [Escherichia coli ED1a]
 gi|218699714|ref|YP_002407343.1| threonyl-tRNA synthetase [Escherichia coli IAI39]
 gi|218705218|ref|YP_002412737.1| threonyl-tRNA synthetase [Escherichia coli UMN026]
 gi|237705668|ref|ZP_04536149.1| threonyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|238900934|ref|YP_002926730.1| threonyl-tRNA synthetase [Escherichia coli BW2952]
 gi|253773326|ref|YP_003036157.1| threonyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254161779|ref|YP_003044887.1| threonyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|256022617|ref|ZP_05436482.1| threonyl-tRNA synthetase [Escherichia sp. 4_1_40B]
 gi|293405218|ref|ZP_06649210.1| threonyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|293410035|ref|ZP_06653611.1| threonyl-tRNA synthetase [Escherichia coli B354]
 gi|293415037|ref|ZP_06657680.1| threonyl-tRNA synthetase [Escherichia coli B185]
 gi|297517244|ref|ZP_06935630.1| threonyl-tRNA synthetase [Escherichia coli OP50]
 gi|298380861|ref|ZP_06990460.1| threonyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|300938947|ref|ZP_07153648.1| threonyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|300987614|ref|ZP_07178286.1| threonyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|300994418|ref|ZP_07180923.1| threonyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|301017728|ref|ZP_07182383.1| threonyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|301025270|ref|ZP_07188835.1| threonyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|306815028|ref|ZP_07449184.1| threonyl-tRNA synthetase [Escherichia coli NC101]
 gi|307138378|ref|ZP_07497734.1| threonyl-tRNA synthetase [Escherichia coli H736]
 gi|312966921|ref|ZP_07781139.1| threonyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|331642316|ref|ZP_08343451.1| threonine--tRNA ligase [Escherichia coli H736]
 gi|331653119|ref|ZP_08354124.1| threonine--tRNA ligase [Escherichia coli M718]
 gi|67473036|sp|P0A8M3|SYT_ECOLI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|67473037|sp|P0A8M4|SYT_ECOL6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|67473038|sp|P0A8M5|SYT_SHIFL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122957455|sp|Q0T4S9|SYT_SHIF8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123084457|sp|Q1RB76|SYT_ECOUT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123343967|sp|Q0THB0|SYT_ECOL5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123732358|sp|Q3Z267|SYT_SHISS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223339|sp|A1ABQ2|SYT_ECOK1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701400|sp|B7MAS9|SYT_ECO45 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701401|sp|B7NT58|SYT_ECO7I RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701403|sp|B7N556|SYT_ECOLU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701404|sp|B1LE12|SYT_ECOSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229557979|sp|B1XGI1|SYT_ECODH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783521|sp|B7USA2|SYT_ECO27 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783523|sp|B7MVJ7|SYT_ECO81 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516437|sp|C4ZYI1|SYT_ECOBW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|5107656|pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
           With Its Cognate Trna
 gi|26108373|gb|AAN80575.1|AE016761_150 Threonyl-tRNA synthetase [Escherichia coli CFT073]
 gi|1742811|dbj|BAA15498.1| threonyl-tRNA synthetase [Escherichia coli str. K12 substr. W3110]
 gi|1788013|gb|AAC74789.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24051829|gb|AAN43102.1| threonine tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|30041263|gb|AAP16992.1| threonine tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|73855438|gb|AAZ88145.1| threonine tRNA synthetase [Shigella sonnei Ss046]
 gi|91072507|gb|ABE07388.1| threonyl-tRNA synthetase [Escherichia coli UTI89]
 gi|110343432|gb|ABG69669.1| threonyl-tRNA synthetase [Escherichia coli 536]
 gi|110615019|gb|ABF03686.1| threonine tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|115513017|gb|ABJ01092.1| threonine tRNA synthetase [Escherichia coli APEC O1]
 gi|169889212|gb|ACB02919.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|170517930|gb|ACB16108.1| threonyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|188487464|gb|EDU62567.1| threonyl-tRNA synthetase [Escherichia coli 53638]
 gi|190908082|gb|EDV67674.1| threonyl-tRNA synthetase [Escherichia coli F11]
 gi|194416606|gb|EDX32741.1| threonyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|194422590|gb|EDX38588.1| threonyl-tRNA synthetase [Escherichia coli 101-1]
 gi|215265010|emb|CAS09396.1| threonyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|218365357|emb|CAR03078.1| threonyl-tRNA synthetase [Escherichia coli S88]
 gi|218369700|emb|CAR17469.1| threonyl-tRNA synthetase [Escherichia coli IAI39]
 gi|218427227|emb|CAR08113.2| threonyl-tRNA synthetase [Escherichia coli ED1a]
 gi|218432315|emb|CAR13205.1| threonyl-tRNA synthetase [Escherichia coli UMN026]
 gi|222033474|emb|CAP76215.1| Threonyl-tRNA synthetase [Escherichia coli LF82]
 gi|226900425|gb|EEH86684.1| threonyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|238863657|gb|ACR65655.1| threonyl-tRNA synthetase [Escherichia coli BW2952]
 gi|242377442|emb|CAQ32194.1| threonyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|253324370|gb|ACT28972.1| threonyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253973680|gb|ACT39351.1| threonyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|253977874|gb|ACT43544.1| threonyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|260449158|gb|ACX39580.1| threonyl-tRNA synthetase [Escherichia coli DH1]
 gi|281600917|gb|ADA73901.1| Threonyl-tRNA synthetase [Shigella flexneri 2002017]
 gi|284921639|emb|CBG34711.1| threonyl-tRNA synthetase [Escherichia coli 042]
 gi|291427426|gb|EFF00453.1| threonyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|291432685|gb|EFF05664.1| threonyl-tRNA synthetase [Escherichia coli B185]
 gi|291470503|gb|EFF12987.1| threonyl-tRNA synthetase [Escherichia coli B354]
 gi|294493274|gb|ADE92030.1| threonyl-tRNA synthetase [Escherichia coli IHE3034]
 gi|298278303|gb|EFI19817.1| threonyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|299880135|gb|EFI88346.1| threonyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|300306094|gb|EFJ60614.1| threonyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|300400020|gb|EFJ83558.1| threonyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|300406264|gb|EFJ89802.1| threonyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|300456146|gb|EFK19639.1| threonyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|305851676|gb|EFM52129.1| threonyl-tRNA synthetase [Escherichia coli NC101]
 gi|307553740|gb|ADN46515.1| threonine tRNA synthetase [Escherichia coli ABU 83972]
 gi|307626794|gb|ADN71098.1| threonyl-tRNA synthetase [Escherichia coli UM146]
 gi|309701942|emb|CBJ01255.1| threonyl-tRNA synthetase [Escherichia coli ETEC H10407]
 gi|312288385|gb|EFR16287.1| threonyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|315136359|dbj|BAJ43518.1| threonyl-tRNA synthetase [Escherichia coli DH1]
 gi|315286432|gb|EFU45867.1| threonyl-tRNA synthetase [Escherichia coli MS 110-3]
 gi|315290480|gb|EFU49854.1| threonyl-tRNA synthetase [Escherichia coli MS 153-1]
 gi|320181253|gb|EFW56172.1| Threonyl-tRNA synthetase [Shigella boydii ATCC 9905]
 gi|320194570|gb|EFW69201.1| Threonyl-tRNA synthetase [Escherichia coli WV_060327]
 gi|323937321|gb|EGB33600.1| threonyl-tRNA synthetase [Escherichia coli E1520]
 gi|323940615|gb|EGB36806.1| threonyl-tRNA synthetase [Escherichia coli E482]
 gi|323952226|gb|EGB48099.1| threonyl-tRNA synthetase [Escherichia coli H252]
 gi|323956620|gb|EGB52358.1| threonyl-tRNA synthetase [Escherichia coli H263]
 gi|323962102|gb|EGB57698.1| threonyl-tRNA synthetase [Escherichia coli H489]
 gi|323973902|gb|EGB69074.1| threonyl-tRNA synthetase [Escherichia coli TA007]
 gi|323978098|gb|EGB73184.1| threonyl-tRNA synthetase [Escherichia coli TW10509]
 gi|324011501|gb|EGB80720.1| threonyl-tRNA synthetase [Escherichia coli MS 60-1]
 gi|331039114|gb|EGI11334.1| threonine--tRNA ligase [Escherichia coli H736]
 gi|331049217|gb|EGI21289.1| threonine--tRNA ligase [Escherichia coli M718]
 gi|332758628|gb|EGJ88947.1| threonyl-tRNA synthetase [Shigella flexneri 2747-71]
 gi|333003769|gb|EGK23305.1| threonyl-tRNA synthetase [Shigella flexneri VA-6]
 gi|333004377|gb|EGK23908.1| threonyl-tRNA synthetase [Shigella flexneri K-218]
 gi|333006570|gb|EGK26070.1| threonyl-tRNA synthetase [Shigella flexneri K-272]
 gi|333018789|gb|EGK38082.1| threonyl-tRNA synthetase [Shigella flexneri K-227]
          Length = 642

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KDLGSMDVNEVIEKLQQEIRSR 635


>gi|292488129|ref|YP_003531006.1| threonyl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|292899340|ref|YP_003538709.1| threonyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291199188|emb|CBJ46302.1| threonyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291553553|emb|CBA20598.1| Threonyl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|312172261|emb|CBX80518.1| Threonyl-tRNA synthetase [Erwinia amylovora ATCC BAA-2158]
          Length = 642

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYE 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKEAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    ++T                        +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDELWDRSET-----------------DLAAALKENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    + S    A++ G
Sbjct: 451 PFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              +    V +    +G+M     ++   + G    W   +    +++           +
Sbjct: 500 ESNERQVPVMIHRAILGSMERFIGILTEEYAGFFPTWLAPLQVVVMNIT------DGQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G     D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVAELTRKLQNAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + E I        + 
Sbjct: 614 KDLGSIDVNEAIAKLQDEIRSR 635


>gi|170768863|ref|ZP_02903316.1| threonyl-tRNA synthetase [Escherichia albertii TW07627]
 gi|170122411|gb|EDS91342.1| threonyl-tRNA synthetase [Escherichia albertii TW07627]
          Length = 642

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KDLGSMDVNEVIEKLQQEIRSR 635


>gi|226954309|ref|ZP_03824773.1| threonyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
 gi|226834935|gb|EEH67318.1| threonyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
          Length = 640

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG   +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQIVDFTLWEKSGHAANYAENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  +          L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTKEQIGQE-VADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P                           D    S     DD   
Sbjct: 407 YKDFGFEEVQMKLSTRPEKR-----------------VGDDALWDIAEKSLADALDDAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +      +                A++  
Sbjct: 450 AWDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQCDFNLPIRLD--------ASYVT 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +      +    +G+      ++    +      P  +AP +  ++NI        D
Sbjct: 499 EDNERDQPVMLHRAILGSFERFIGILI---EHYAGFMPPWLAPIQACVMNITDS---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           ACE++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R  
Sbjct: 553 ACEQVVAKLKESGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS++  I+      +  
Sbjct: 613 KNLGTMSIDAFIDLVKSAVAER 634


>gi|229173066|ref|ZP_04300617.1| Threonyl-tRNA synthetase [Bacillus cereus MM3]
 gi|228610399|gb|EEK67670.1| Threonyl-tRNA synthetase [Bacillus cereus MM3]
          Length = 639

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 153/443 (34%), Gaps = 40/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q    
Sbjct: 235 YLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYK 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW +SG +  Y   M   ++ ++K+    P +      +F++ + SY
Sbjct: 293 YQEVRTPFMMNQELWEKSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHSY 351

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R E      G++R R F   DA+   +TPE  +     +      +
Sbjct: 352 RELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDYV 410

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G                   E+ V   T            +    +       +  
Sbjct: 411 YKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEEALENVLHSLNY 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   + D+L  + +     ++    F    K+       +  
Sbjct: 453 KYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYID 501

Query: 305 ADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              +      +    +G++    A++     G    W        + +  I   + V   
Sbjct: 502 EKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHVQ 556

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++    
Sbjct: 557 YADEIADKLAQAGIRVERDVRDEKLGYKIREAQMQKVPYVLVIGDKEMENGSVNVRKYGE 616

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
              E + L   +        N +
Sbjct: 617 DQSEVIELNGFVESIKEEIKNKK 639


>gi|284801950|ref|YP_003413815.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284995092|ref|YP_003416860.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5923]
 gi|284057512|gb|ADB68453.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284060559|gb|ADB71498.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5923]
          Length = 640

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 166/441 (37%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R G
Sbjct: 230 FIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SY
Sbjct: 289 YNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++ L  R E+      ++    +  +     + P+  K  + ++    L ++
Sbjct: 349 RELPIRIAELGLMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
               +     R                  D   T+ +   D M     +   +  D++  
Sbjct: 409 KDFDITDYSFRLS--------------YRDPKNTEKYFDDDAMWEKAQAMLKSAMDEMEM 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G
Sbjct: 455 DYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIG 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   +     G +  +   +    +     +P  +AP ++ +I + A      D 
Sbjct: 504 EDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQMEIIPVNA--DAHLDY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L + G     DD  E++G +   A     P  +++G + V    V ++   + 
Sbjct: 560 AKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRYGSK 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E M L+  I       S  
Sbjct: 620 DSETMDLDAFIAQVVAEVSKY 640


>gi|262374306|ref|ZP_06067582.1| threonyl-tRNA synthetase [Acinetobacter junii SH205]
 gi|262310864|gb|EEY91952.1| threonyl-tRNA synthetase [Acinetobacter junii SH205]
          Length = 640

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 142/441 (32%), Gaps = 38/441 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG   +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQIVDFTLWEKSGHAANYAENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  K          L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTKEQIGKE-VADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P                           D    S     DD   
Sbjct: 407 YKDFGFEEVQMKLSTRPEKR-----------------VGDDALWDLAEKSLADALDDAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +      +          Y          
Sbjct: 450 AWDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQCDFNLPIRLDASY-------VTE 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +D  V +    +G+      ++    +      P  +AP +  ++NI        +A
Sbjct: 500 ENERDQPVMLHRAILGSFERFIGILI---EHYAGFMPPWLAPVQACVMNITDS---QAEA 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R   
Sbjct: 554 SEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGK 613

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS++  I+      +  
Sbjct: 614 NLGTMSVDAFIDLVKSAVAER 634


>gi|307310711|ref|ZP_07590357.1| threonyl-tRNA synthetase [Escherichia coli W]
 gi|331647210|ref|ZP_08348304.1| threonine--tRNA ligase [Escherichia coli M605]
 gi|331673269|ref|ZP_08374037.1| threonine--tRNA ligase [Escherichia coli TA280]
 gi|281178789|dbj|BAI55119.1| threonyl-tRNA synthetase [Escherichia coli SE15]
 gi|306908889|gb|EFN39385.1| threonyl-tRNA synthetase [Escherichia coli W]
 gi|315061024|gb|ADT75351.1| threonyl-tRNA synthetase [Escherichia coli W]
 gi|315299748|gb|EFU58988.1| threonyl-tRNA synthetase [Escherichia coli MS 16-3]
 gi|323378405|gb|ADX50673.1| threonyl-tRNA synthetase [Escherichia coli KO11]
 gi|330911523|gb|EGH40033.1| threonyl-tRNA synthetase [Escherichia coli AA86]
 gi|331043993|gb|EGI16129.1| threonine--tRNA ligase [Escherichia coli M605]
 gi|331069467|gb|EGI40854.1| threonine--tRNA ligase [Escherichia coli TA280]
 gi|332343438|gb|AEE56772.1| threonyl-tRNA synthetase ThrS [Escherichia coli UMNK88]
          Length = 642

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           D
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KDLGSMDVNEVIEKLQQEIRSR 635


>gi|323968488|gb|EGB63894.1| threonyl-tRNA synthetase [Escherichia coli M863]
          Length = 642

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G   IW   V    +++           +
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPIWLAPVQVVIMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KDLGSMDVNEVIEKLQQEIRSR 635


>gi|332284530|ref|YP_004416441.1| threonyl-tRNA synthetase [Pusillimonas sp. T7-7]
 gi|330428483|gb|AEC19817.1| threonyl-tRNA synthetase [Pusillimonas sp. T7-7]
          Length = 648

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 138/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +S Y   + +   RD      +L L        + G+  W P G      V   +R    
Sbjct: 233 QSAYLTMLEEAERRDHRKIGRELDLF--HFQDEAPGLIFWHPKGWTLWQQVEQYMRSVYR 290

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P +    LW ++G +D+Y + M    +  ++     P +      IF + +
Sbjct: 291 DNGYQEVKAPQILDLSLWKKTGHWDNYAENMFT-TESENRVYGLKPMNCPGHVQIFNAGL 349

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP  + +     R+E      G+MR R F   D + F    +             
Sbjct: 350 HSYRELPIRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIFCTEDQLQDEC-ADFTALL 408

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +++   G   I  +  + P     S E    A+    +            P E      
Sbjct: 409 QKVYADFGFTEILYKVATRPEKRIGSDEVWDKAEQALMESLSRTGCEYEVSPGE------ 462

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y    +     L D++  + +     ++       G        A 
Sbjct: 463 -----------GAFYGPKIEY---TLKDAIGRHWQCGTIQVDFSMPQRLG--------AE 500

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  A  +      +    +G+      ++  +H G   +W          +       + 
Sbjct: 501 YVDATDQRRTPVMLHRAILGSFERFIGMLIENHAGAMPVWLAPEHAVVCCI------SES 554

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L K G   F D  GE+I  +     +   P  ++VG K     +V ++ 
Sbjct: 555 SADYAAEVALGLKKQGFRAFSDLRGEKITRKIREHSMQKIPYILVVGEKERESGQVAVRG 614

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       MSL +         +  
Sbjct: 615 RGGVDLGVMSLNDFTVRLQQEIATR 639


>gi|299066586|emb|CBJ37776.1| threonine tRNA synthetase [Ralstonia solanacearum CMR15]
          Length = 635

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 150/444 (33%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD       L L    + + + G+  W P G +    V   +R     
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKVLDLF--HLQEEAPGMVFWHPKGWQIWQAVEQYMRGRLAG 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG +++Y + M  + +   +     P +      IF   ++
Sbjct: 287 AGYSEVRTPQVMDRGLWERSGHWENYKENMF-VTESEKREYAIKPMNCPGHVQIFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T                
Sbjct: 346 SYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIFC-TEGQIMAEAKDFNDLAF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G +++ ++    P     S +    A+ G      +       +P E       
Sbjct: 405 SVYEDFGFENVAVKLALRPDKRAGSDDIWDHAEDGLRTALRACGVEWEELPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   + D++  + +     +++      G        A +
Sbjct: 458 ----------GAFYGPKVEYH---IKDAIGRSWQCGTLQLDLVLPERLG--------AEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G+      ++  +H G   +W        +S+          
Sbjct: 497 VAEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPLWLAPEQVVVMSIA------DAH 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E +   L K G   F D   E+I  +     L   P  V+VG K    ++V ++ R
Sbjct: 551 AEYAESVAQSLQKQGFRAFADLRNEKITYKIREHSLQKVPYLVVVGDKERDGNQVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M +   +    + F+N 
Sbjct: 611 GNVDLGSMPVSTFVERLQNDFANK 634


>gi|315282482|ref|ZP_07870886.1| threonyl-tRNA synthetase [Listeria marthii FSL S4-120]
 gi|313613866|gb|EFR87606.1| threonyl-tRNA synthetase [Listeria marthii FSL S4-120]
          Length = 640

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 167/441 (37%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R G
Sbjct: 230 FIQMQKEAKERDHRKLGKELDLFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SY
Sbjct: 289 YNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++ +  R E+      ++    +  +     + P+  K  + ++    L ++
Sbjct: 349 RELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
               +K    R                  D   T+ +   D M     S   +  D++  
Sbjct: 409 KDFDIKDYSFRLS--------------YRDPKNTEKYFDDDAMWEKAQSMLKSAMDEMGM 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G
Sbjct: 455 DYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIG 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   +     G +  +   +    +     +P  +AP ++ LI + A      + 
Sbjct: 504 EDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQMELIPVNA--DAHLNY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L + G     DD  E++G +   A     P  +++G + V    V ++   + 
Sbjct: 560 AKGVQDKLQRAGLRSEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRYGSK 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E M L+  I       S  
Sbjct: 620 DSETMDLDAFIAQVVAEVSKY 640


>gi|93007241|ref|YP_581678.1| threonyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
 gi|123264359|sp|Q1Q809|SYT_PSYCK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|92394919|gb|ABE76194.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Psychrobacter
           cryohalolentis K5]
          Length = 644

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q+  G
Sbjct: 231 YIQRIEEAEKRDHRKIGKALNLF--HMQEQAPGMVFWHANGWTIYQVLEQYMRKVQHDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG + +Y   M       ++     P +      +F   +KSY
Sbjct: 289 YEEIKTPQIVDRSLWERSGHWGNYATNMFT-TSSENRDYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T    +          L +
Sbjct: 348 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TQSQIQQEVADFIKLTLAV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E                   DF   +     D    
Sbjct: 407 YEDFGFDKIIMKLSTRPEKRVGSDE-----------------SWDFAEKALADALDSSGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             + +    A Y    +     L DSL    +     ++              + A F  
Sbjct: 450 DWAYLPGEGAFYGPKIEF---SLKDSLGRVWQCGTIQVDPNMP--------ERLDAEFVN 498

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              +    + +    +G+      ++  ++ G   +W        +++           D
Sbjct: 499 EQNEREVPIMLHRAILGSFERFIGILIENYAGWMPVWLAPQQVVVMNIT------DKQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           ACE +   L K G     D   E+IG +     L   P  +++G K V    + ++ R  
Sbjct: 553 ACENVVNELKKAGLRAISDLRNEKIGFKIREKTLERIPYMLVLGDKEVESGSINVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+ E I       +  
Sbjct: 613 ENLGVMSVAEFITLVEAAVAEK 634


>gi|126651397|ref|ZP_01723604.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126591926|gb|EAZ86009.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 643

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 171/442 (38%), Gaps = 32/442 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K+ L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++  
Sbjct: 232 KHHLQMLEEAKERDHRKIGKELELFTT-SQKVGQGLPLWLPNGATIRRVIERYIVDKELS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L S +L+  SG +D Y   +    + +++ +I  P +      ++++ + 
Sbjct: 291 LGYKHVYTPVLGSKELYQTSGHWDHYQDSIFPPMEMDNETLIMRPMNCPHHMMVYKNSMH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR+LP    ++    R E+      ++    +  +     + P+  K  + K+    L 
Sbjct: 351 SYRSLPLRIAELGTMHRYEMSGAVSGLQRVRGMTLNDAHIFVRPDQIKAEFQKVVQLILE 410

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    L     R                  D  +T+ + + D M     S      D++
Sbjct: 411 VYKDFDLNDYSFRLS--------------YRDPADTEKYFNDDAMWEKAQSMLKEAMDEL 456

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  ++ + + +S   ++    F    ++      ++
Sbjct: 457 GLDYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LSY 505

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DGK H   +     G +  +   +    +     +P  +AP ++ +I +   ++   
Sbjct: 506 VGEDGKPHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVEVIPV--SNEAHF 561

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  ++I  +L+  G  V  DD  E++G +   A +   P  +++G K V  S V ++   
Sbjct: 562 DYAKQIEEQLTAAGLRVEMDDREEKLGYKIREAQMKKIPYMLVIGDKEVEASGVNVRRYG 621

Query: 423 TGIREDMSLEEVINYASHRFSN 444
           +   E +S E  +       + 
Sbjct: 622 SKDSETISFENFLAAIKAEITK 643


>gi|319786721|ref|YP_004146196.1| threonyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465233|gb|ADV26965.1| threonyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
          Length = 634

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 149/443 (33%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K ++  ++E   RD      +  L    + + + G+  W P G      V   +R  
Sbjct: 227 KQLKAYIQRIEEAEKRDHRRIGKQQDLF--HLQEEAPGLVFWHPKGWSVWQVVEQYMRRV 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
              TG  E+  P +    LW +SG +D+Y   M    +   +     P +      IF  
Sbjct: 285 YRETGYGEVRCPQILDVSLWKKSGHWDNYQDNMF-FTESEKRTYAVKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SYR+LP  + +     R+E      G++R R F   D + F  T +  +        
Sbjct: 344 GLHSYRDLPIRYGEFGSCHRNEPSGALHGILRVRGFTQDDGHVFC-TEQQIESEVRAFHA 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L+++   G + I ++    P                           D    +  +  
Sbjct: 403 QALKVYTDFGFEDIQIKIALRPDNR-----------------LGDDATWDKAEDALRSAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                    +    A Y    + H   L D++    ++    ++       G        
Sbjct: 446 RASGVEWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLG-------- 494

Query: 300 ATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   +  + H V +    +G+M     ++   H G+   W   V    +++       
Sbjct: 495 AEYVDENSQRRHPVMLHRAIVGSMERFIGILIEHHAGQFPAWLAPVQAVVMNIT------ 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            V  +   ++   L+  G  V  D   E+IG +     L   P  ++VG +   +  V +
Sbjct: 549 DVQAEYVNEVRKVLANQGFRVEADLRNEKIGFKIREHTLQRVPYLLVVGDREKENGAVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R       MS+ +  +    +
Sbjct: 609 RTRSGEDLGTMSVSDFADTLRSQ 631


>gi|296388793|ref|ZP_06878268.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa PAb1]
          Length = 640

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRRIGKQLDLF--HLQEEAPGMVFWHPNGWSVYQVLEQYMRKVQRDHG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      IF   +KSY
Sbjct: 289 YVEVRTPQVVDRILWERSGHWSNYAENMFT-TSSESRDYAVKPMNCPCHVQIFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  K +        L++
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEEQVKKEA-ADFIKLTLQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E                   D    +     ++   
Sbjct: 407 YRDFGFTDIAMKLSTRPAKRVGSDE-----------------LWDRAEGALADALNESGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L  N +      +              + A++  
Sbjct: 450 AWEYQPGEGAFYGPKIEF---TLKDCLGRNWQCGTLQYDPNLP--------ERLDASYIA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++    +     +P  +AP +  ++NI        D
Sbjct: 499 EDNNRKRPVMLHRAILGSFERFIGMLI---EHYAGAFPAWLAPTQAVVMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FAAEVVRMLGESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVESKAVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +     +   S  
Sbjct: 613 EDLGSMPVTQFAELLAQAVSRR 634


>gi|308186646|ref|YP_003930777.1| Threonyl-tRNA synthetase [Pantoea vagans C9-1]
 gi|308057156|gb|ADO09328.1| Threonyl-tRNA synthetase [Pantoea vagans C9-1]
          Length = 642

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 138/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKEAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHVFCTEEQVRDE-VNSCIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGTDE-----------------MWDRAEEDLAAALNENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F         + AT+ G
Sbjct: 451 EFEFQPGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLP----KRLEATYVG 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +        +    +G+M     ++     G    W   +    +++           +
Sbjct: 500 ENNDRQTPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPLQVVVMNIT------DGQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E +  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVESLTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M ++  +        + 
Sbjct: 614 KDLGSMDVDLFVEKLQQEIRSR 635


>gi|330502208|ref|YP_004379077.1| prolyl-tRNA synthetase [Pseudomonas mendocina NK-01]
 gi|328916494|gb|AEB57325.1| prolyl-tRNA synthetase [Pseudomonas mendocina NK-01]
          Length = 571

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 119/237 (50%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V  ++REE
Sbjct: 1   MRTSQFLLSTLKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR+  YG E+LR+ DR+D+    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPAIQPAELWQESGRWVQYGPELLRIKDRHDREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REFLMKDAYSF       + +Y++M  +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  +F RLGL   P++A++G IGG  SHEF VLAD+GE  +  S    D+    E  
Sbjct: 181 YCNVFTRLGLNFRPVQADTGSIGGTGSHEFHVLADSGEDDIAFSDS-SDYAANIEKA 236



 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 74/207 (35%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +    G +GK   + MG YGIG  RVVAA IE + D +GI W D++APF I+L+ ++   
Sbjct: 424 NCQVLGENGKPVTLTMGCYGIGVSRVVAAAIEQNFDERGIRWNDALAPFHIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  R+A +K+YA L+  G DV  DD  +    G +FA  +L+G P +V+V  + +++ K+
Sbjct: 484 EQVREATDKLYAELTAAGFDVLLDDRDKKTSPGIKFADMELIGIPHRVVVSDRGLAEGKL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + + L E++++   R  
Sbjct: 544 EYKSRAETEAQAVPLAEILSFLQARIK 570


>gi|300703878|ref|YP_003745480.1| threonine tRNA synthetase [Ralstonia solanacearum CFBP2957]
 gi|299071541|emb|CBJ42865.1| threonine tRNA synthetase [Ralstonia solanacearum CFBP2957]
          Length = 635

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 148/444 (33%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    + + + G+  W P G +    V   +R     
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HLQEEAPGMVFWHPKGWQIWQAVEQYMRGRLAG 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG + +Y + M  + +   +     P +      IF   ++
Sbjct: 287 AGYSEVRTPQVMDRTLWEHSGHWQNYKENMF-VTESEKREYAIKPMNCPGHVQIFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T                
Sbjct: 346 SYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIFC-TEGQIMAEAKDFNDLAF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G +++ ++    P     + E    A+ G      +       +P E       
Sbjct: 405 SVYEDFGFENVAVKLALRPDKRAGTDEIWDHAEEGLRTALRACGVEWEELPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   + D++  + +     +++      G        A +
Sbjct: 458 ----------GAFYGPKVEYH---IKDAIGRSWQCGTLQLDLVLPERLG--------AEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G+      ++  +H G   +W        +S+          
Sbjct: 497 VSEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPLWLAPEQVVVMSIA------DAH 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   L K G     D   E+I  +     L   P  V+VG K    ++V ++ R
Sbjct: 551 AEYVQTVAQSLQKQGFRASADLRNEKITYKIREHSLQKVPYLVVVGDKERDGNQVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M +   +    +  +N 
Sbjct: 611 GNVDLGSMPISAFVERLQNDLANK 634


>gi|169829542|ref|YP_001699700.1| threonyl-tRNA synthetase 1 [Lysinibacillus sphaericus C3-41]
 gi|168994030|gb|ACA41570.1| Threonyl-tRNA synthetase 1 [Lysinibacillus sphaericus C3-41]
          Length = 643

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 170/442 (38%), Gaps = 32/442 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K+ L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++  
Sbjct: 232 KHHLQMLEEAKERDHRKIGKELELFTT-SQKVGQGLPLWLPNGATIRRVIERYIVDKELS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L S +L+  SG +D Y   +    + +++ +I  P +      ++++ + 
Sbjct: 291 LGYKHVYTPVLGSKELYQTSGHWDHYQDSIFPPMEMDNETLIMRPMNCPHHMMVYKNSMH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR+LP    ++    R E+      ++    +  +     + P+  K  + K+    L 
Sbjct: 351 SYRSLPLRIAELGTMHRYEMSGAVSGLQRVRGMTLNDAHIFVRPDQIKAEFQKVVQLILE 410

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    L     R                  D  +T+ + + D M     S      D++
Sbjct: 411 VYKDFDLNDYSFRLS--------------YRDPADTEKYFNDDAMWEKAQSMLKEAMDEL 456

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  ++ + + +S   ++    F    ++      ++
Sbjct: 457 GLDYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LSY 505

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DGK H   +     G +  +   +    +     +P  +AP ++ +I +   ++   
Sbjct: 506 VGEDGKPHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVEVIPV--SNEAHF 561

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  ++I  +L+  G  V  DD  E++G +   A +   P  +++G K V    V ++   
Sbjct: 562 DYAKQIEEQLTAAGLRVEMDDREEKLGYKIREAQMKKIPYMLVIGDKEVEAKGVNVRRYG 621

Query: 423 TGIREDMSLEEVINYASHRFSN 444
           +   E +S E  +       + 
Sbjct: 622 SKDSETISFENFLAAIKAEITK 643


>gi|56413681|ref|YP_150756.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362604|ref|YP_002142241.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|73919824|sp|Q5PH96|SYT_SALPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238689908|sp|B5BA42|SYT_SALPK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56127938|gb|AAV77444.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094081|emb|CAR59581.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 642

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDE-VNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPDKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 EDNERKVPVIIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + +VI        + 
Sbjct: 614 KDLGSLDVNDVIEKLQQEIRSR 635


>gi|327393701|dbj|BAK11123.1| Threonyl-tRNA synthetase ThrS [Pantoea ananatis AJ13355]
          Length = 642

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 137/442 (30%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEDQLRTE-VNSCIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------TWDRAEEDLAAALNENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F         + AT+ G
Sbjct: 451 EFEYQPGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLP----KRLDATYVG 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +        +    +G+M     ++     G    W   +    +++           +
Sbjct: 500 ENNDRQTPVMIHRAILGSMERFIGILTEEFAGFFPSWLAPMQAVVMNIT------DGQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E +  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVETLTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M ++  +        + 
Sbjct: 614 KDLGSMDVDVFVEKLQQEIRSR 635


>gi|320173198|gb|EFW48409.1| Threonyl-tRNA synthetase [Shigella dysenteriae CDC 74-1112]
 gi|320185858|gb|EFW60609.1| Threonyl-tRNA synthetase [Shigella flexneri CDC 796-83]
 gi|332096305|gb|EGJ01306.1| threonyl-tRNA synthetase [Shigella boydii 3594-74]
          Length = 622

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 431 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 479

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 480 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSE 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 534 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 594 KDLGSMDVNEVIEKLQQEIRSR 615


>gi|225568704|ref|ZP_03777729.1| hypothetical protein CLOHYLEM_04783 [Clostridium hylemonae DSM
           15053]
 gi|225162203|gb|EEG74822.1| hypothetical protein CLOHYLEM_04783 [Clostridium hylemonae DSM
           15053]
          Length = 583

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 83/437 (18%), Positives = 152/437 (34%), Gaps = 41/437 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M      G   +LP G    + +    R+   R G
Sbjct: 184 YLKRMEEARLRDHRKLGKELGLFAIM--DEGPGFPFFLPKGMVLKNLLIDYWRQLHLREG 241

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + S  LW  SG +D Y   M      +++     P +      +++   +SY
Sbjct: 242 YVEISTPIILSRHLWENSGHWDHYKDNMYT-TVIDEEDYAVKPMNCPGGMLVYKVEPRSY 300

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    ++ L  R E   +  G+MR R F   DA+ F    +          +     
Sbjct: 301 KDLPMRVGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMTEDQIRDEIKGVARLI---- 356

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                            +      ++ V   T       S    +          +++  
Sbjct: 357 ---------------DEVYSKFGFKYHVELSTRPENSMGSDADWEMATEGLRGALEELGM 401

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H E   DS+    +     ++    F    ++       + G
Sbjct: 402 DYVVNEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQMPQRF----ELEYTG 450

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++   + GK   W   +AP ++ ++ +        D
Sbjct: 451 ADGEKHRPIMIHRVAFGSIERFIGILIEHYAGKFPTW---LAPVQVKILPVSDK---FAD 504

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L   G  V  D   E++G +   A +   P  +IVG K V+++ V ++ R  
Sbjct: 505 YAQKVTDELKAAGIRVELDGRSEKLGYKIREAQMQKVPYMIIVGEKEVAENVVSVRKRDE 564

Query: 424 GIREDMSLEEVINYASH 440
           G    M L+        
Sbjct: 565 GDIGSMELKTFTEKVLE 581


>gi|311279396|ref|YP_003941627.1| threonyl-tRNA synthetase [Enterobacter cloacae SCF1]
 gi|308748591|gb|ADO48343.1| threonyl-tRNA synthetase [Enterobacter cloacae SCF1]
          Length = 642

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDE-VNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 ENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVETGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KDLGSMDVNEVIEKLLQEIRSR 635


>gi|291085451|ref|ZP_06353132.2| threonine--tRNA ligase [Citrobacter youngae ATCC 29220]
 gi|291071041|gb|EFE09150.1| threonine--tRNA ligase [Citrobacter youngae ATCC 29220]
          Length = 622

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDE-VNACIRMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 431 PFEFQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 479

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 480 ENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSE 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 534 YVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + EVI        + 
Sbjct: 594 KDLGSLDVNEVIEKLQQEIRSR 615


>gi|210634040|ref|ZP_03297958.1| hypothetical protein COLSTE_01876 [Collinsella stercoris DSM 13279]
 gi|210158984|gb|EEA89955.1| hypothetical protein COLSTE_01876 [Collinsella stercoris DSM 13279]
          Length = 587

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 90/442 (20%), Positives = 156/442 (35%), Gaps = 44/442 (9%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      ++ L   M+   + G   +LP G    + +    RE  ++ G 
Sbjct: 185 LTMLEEAKKRDHRRIGREMDLF--MMRDEAPGFPFFLPNGMILKNTLLDYWREIHHKAGY 242

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +E+S P + ++ LW  SG +D Y   M      + +     P +      ++ S   SYR
Sbjct: 243 VEISTPQIMNSQLWKTSGHWDHYKDNMYSTM-IDGEEYCIKPMNCPGGVLVYASKPHSYR 301

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    +I L  R EL+    G+ R R F   DA+ F    + +        V+ +   
Sbjct: 302 ELPIRAGEIGLVHRHELKGALHGLFRVRCFNQDDAHLFVTPEQLTDEIV--GVVNLITSV 359

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           +     +  +   + P     S E    A+ G                   T  + +   
Sbjct: 360 YDKFGFTYHLELSTRPEDSMGSDEDWERAEAG-----------------LKTALERLGME 402

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             + E   A Y    D H E   DSL    +     ++    F     +       +  A
Sbjct: 403 YVVNEGDGAFYGPKIDFHLE---DSLGRTWQCGTVQLD----FQMPQNFD----LEYVDA 451

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG K   + +     G++     ++     GK  +W   +    + +       +  RD 
Sbjct: 452 DGTKKRPIMLHRVCFGSIERFIGILIEHFAGKFPVWLAPMQVKVLPV------SEKSRDY 505

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++ A+L   G  V  DD  E+IG +   A      P  +I+G K V    + ++ R T
Sbjct: 506 AHEVTAKLEAAGIRVVCDDRDEKIGYKIREARGTDRVPYMLILGEKEVEAGNISVRDR-T 564

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M ++E I          
Sbjct: 565 NETVPMGVDEFIAKVREEIDTR 586


>gi|116626335|ref|YP_828491.1| threonyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
 gi|116229497|gb|ABJ88206.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 644

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 148/443 (33%), Gaps = 36/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y   + +   RD      +L L +  I + +  G+  + P G      +   +R++  + 
Sbjct: 231 YLKQVEEAKKRDHRKLGKELDLFS--IQELAGPGLIFFHPKGGIIRKLLEDWMRDQYLKR 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +   DLW  SG  + Y + M    + +D      P +      I+    +S
Sbjct: 289 GYSLVYTPHVAKLDLWKTSGHANFYAQNMFTPIELDDAEYQLKPMNCPFHILIYADRQRS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    ++   +R E      G+ R R F   DA+ F +    ++          + 
Sbjct: 349 YRDLPVRLGELGTVYRYERSGTLNGLFRVRGFTQDDAHIFCM-QSQAEEEVVNCLQFAID 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                G +       +   G    ++              + D  +    +     D + 
Sbjct: 408 TLAAYGFEKYDAEISTWDGGASGKYD-------------GTPDQWEMAEGALRRAVDKLK 454

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               +V    A Y    DV   KL D++    ++S    +      FG          + 
Sbjct: 455 INAKVVADEAAFYGPKIDV---KLVDAIGRKWQLSTVQFDFTLPRRFG--------LEYI 503

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DGK H    +     G++     ++   + G   +W   V    + +           
Sbjct: 504 GEDGKAHQPIMVHRALYGSIERFFGILVEHYAGAFPVWLAPVQATILPIT------DRQT 557

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +    I  +L + G     D+  E++  +   A +   P  ++VG +     KV +++R 
Sbjct: 558 EYARGIKKQLEEAGIRATVDERNEKVNLKIRDAQMQKIPYMLVVGDREQESGKVAVRNRK 617

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
              +   +L + I        + 
Sbjct: 618 HADQGVKTLADFIAEIRALIESK 640


>gi|47096724|ref|ZP_00234309.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|254898274|ref|ZP_05258198.1| threonyl-tRNA synthetase [Listeria monocytogenes J0161]
 gi|254912233|ref|ZP_05262245.1| threonyl-tRNA synthetase [Listeria monocytogenes J2818]
 gi|254936561|ref|ZP_05268258.1| threonyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|47014908|gb|EAL05856.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|258609155|gb|EEW21763.1| threonyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|293590208|gb|EFF98542.1| threonyl-tRNA synthetase [Listeria monocytogenes J2818]
          Length = 640

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 167/441 (37%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R G
Sbjct: 230 FIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SY
Sbjct: 289 YNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++ +  R E+      ++    +  +     + P+  K  + ++    L ++
Sbjct: 349 RELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
               +K    R                  D   T+ +   D M     +   +  D++  
Sbjct: 409 KDFDIKDYSFRLS--------------YRDPKNTEKYFDDDAMWEKAQAMLKSAMDEMEM 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  ++ + + +S   ++    F    ++      ++ G
Sbjct: 455 DYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LSYIG 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   +     G +  +   +    +     +P  +AP ++ LI + A      D 
Sbjct: 504 EDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQMELIPVNA--DAHLDY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L + G     DD  E++G +   A     P  +++G + V    V ++   + 
Sbjct: 560 AKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRYGSK 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E M L+  I       S  
Sbjct: 620 DSETMDLDAFIAQVVAEVSKY 640


>gi|313888403|ref|ZP_07822071.1| threonine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845600|gb|EFR32993.1| threonine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 636

 Score =  258 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 78/449 (17%), Positives = 153/449 (34%), Gaps = 44/449 (9%)

Query: 2   RRSK---YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   Y     +   RD      +L L +  +H+   G   + P G    +N+    R
Sbjct: 223 KQSQLEEYITRREEAEKRDHRKLGKELDLFS--MHEEGPGFPFFHPNGMILRNNLLNWWR 280

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
              +  G  E+  P + +  LW  SG +D Y   M      +D      P +      ++
Sbjct: 281 GVLDENGYGEILTPIILNEALWHRSGHWDHYKDNM-YFTKIDDGDYAVKPMNCPGSILVY 339

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            S+  SYR+LP    +  +  R EL     G+ R R F   DA+ + L  +     +   
Sbjct: 340 NSNKHSYRDLPIRLAEYGIVHRHELSGALHGLFRVRTFTQDDAHVYCLFSQVKDEVFKM- 398

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   G K       + P       E                   +    S   
Sbjct: 399 IDLADYLYSTFGFKYSI-ELSTRPDDYMGELE-----------------AWNLAEKSLKE 440

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             ++     +I E   A Y    D H E   D++    +     ++    F         
Sbjct: 441 ALEEKNLPYTINEGDGAFYGPKIDFHLE---DAIGRTWQCGTIQLD----FQLP----EN 489

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              T+   +G+      +    +G++     ++    +     +P  ++P ++ +I +  
Sbjct: 490 FDLTYVDENGERQRPVMLHRALLGSVERFMGILI---EHFAGKFPLWLSPVQVEVIPVSD 546

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +D  E I  +L   G  V  D   E++G +   A +      +++G K  +  K+
Sbjct: 547 K---FKDFAESIADKLHAAGLRVHLDGRAEKVGYKIREAQVKKINYMLVIGEKEETSGKL 603

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R     +D+ ++E I        N 
Sbjct: 604 SVRKRNGEEVQDVDVDEFIASLKEEIKNK 632


>gi|309788453|ref|ZP_07683057.1| threonyl-tRNA synthetase [Shigella dysenteriae 1617]
 gi|308923835|gb|EFP69338.1| threonyl-tRNA synthetase [Shigella dysenteriae 1617]
          Length = 622

 Score =  258 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 431 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 479

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           D
Sbjct: 480 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSD 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 534 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 594 KELGSMDVNEVIEKLQQEIRSR 615


>gi|254491441|ref|ZP_05104620.1| threonyl-tRNA synthetase [Methylophaga thiooxidans DMS010]
 gi|224462919|gb|EEF79189.1| threonyl-tRNA synthetase [Methylophaga thiooxydans DMS010]
          Length = 641

 Score =  258 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 139/444 (31%), Gaps = 38/444 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD    +  L L    + + + G+  W   G +    V   IR+   
Sbjct: 228 LKQYLHRLEEAEKRDHRKIAKNLDLF--HLQEEAAGMIFWHDNGWQIYRVVENYIRDVLR 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW +SG +D +  +M+      ++     P +      IF   +
Sbjct: 286 DNDYQEVRTPQVVDRTLWEKSGHWDKF-GDMIFSTHSENRDYAVKPMNCPCHIQIFNQGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +             
Sbjct: 345 KSYRDLPLRMAEFGSCHRNEPSGTLHGLMRLRGFTQDDAHIFCTEDQIQSE-VATFIELL 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G   I ++  + P     S E    A+        + D      P E      
Sbjct: 404 HEVYADFGFNEIIVKLSTRPENRVGSDEVWDKAEKALEDALNAADLDWELQPGE------ 457

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y    +     L D L    +     ++          +       
Sbjct: 458 -----------GAFYGPKIEF---SLKDCLSRVWQCGTIQVDFSMPGRLDAHF------- 496

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               + K   V +    +G++     ++   + G    W        + +          
Sbjct: 497 VADDNSKQVPVMLHRAILGSLERFIGILIEEYAGAFPTWLAPKQVMVMGI------SDKQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +K+   L K G  V  D   E+IG +     L   P  ++VG +   D+ V ++ R
Sbjct: 551 SEYVQKVAKDLQKQGFRVDTDLRNEKIGFKIREHTLRRVPYLIVVGEREAQDNAVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M LE+ +       +  
Sbjct: 611 KGEDLGAMQLEDFVGLLEKDVARR 634


>gi|17546296|ref|NP_519698.1| threonyl-tRNA synthetase [Ralstonia solanacearum GMI1000]
 gi|22654118|sp|Q8XZ29|SYT_RALSO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|17428593|emb|CAD15279.1| probable threonyl-trna synthetase (threonine--trna ligase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 635

 Score =  258 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 149/444 (33%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD       L L    + + + G+  W P G +    V   +R     
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKLLDLF--HLQEEAPGMVFWHPKGWQIWQAVEQYMRGRLAG 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG +++Y + M  + +   +     P +      IF   ++
Sbjct: 287 AGYSEVRTPQVMDRGLWERSGHWENYKENMF-VTESEKREYAIKPMNCPGHVQIFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T                
Sbjct: 346 SYRDLPLRLAEFGACHRNEPSGALHGLMRVRGFVQDDAHIFC-TEGQIMAEAKDFNDLAF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G +++ ++    P     + E    A+ G      +       +P E       
Sbjct: 405 SIYEDFGFENVAVKLALRPDKRAGTDEIWDHAEEGLRTALRACGVEWEELPGE------- 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   + D++  + +     +++      G        A +
Sbjct: 458 ----------GAFYGPKVEYH---IKDAIGRSWQCGTLQLDLVLPERLG--------AEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G+      ++  +H G   +W           + I +     
Sbjct: 497 VAEDNSRKRPVMLHRAILGSFERFLGILLENHAGALPLW------LAPEQVVIMSIADAH 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E +   L K G     D   E+I  +     L   P  V+VG K    ++V ++ R
Sbjct: 551 AEYAESVAQSLQKQGFRASADLRNEKITYKIREHSLQKVPYLVVVGDKERDGNQVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M +   +    + F+N 
Sbjct: 611 GNVDLGSMPVSTFVERLQNDFANK 634


>gi|283785057|ref|YP_003364922.1| threonyl-tRNA synthetase [Citrobacter rodentium ICC168]
 gi|282948511|emb|CBG88100.1| threonyl-tRNA synthetase [Citrobacter rodentium ICC168]
          Length = 642

 Score =  258 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDE-VNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + EVI        + 
Sbjct: 614 KDLGSLDVNEVIEKLQQEIRSR 635


>gi|291617247|ref|YP_003519989.1| ThrS [Pantoea ananatis LMG 20103]
 gi|291152277|gb|ADD76861.1| ThrS [Pantoea ananatis LMG 20103]
          Length = 642

 Score =  258 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 137/442 (30%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEDQLRTE-VNSCIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKILVKLSTRPEKRIGSDE-----------------TWDRAEEDLAAALNENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F         + AT+ G
Sbjct: 451 EFEYQPGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLP----KRLDATYVG 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +        +    +G+M     ++     G    W   +    +++           +
Sbjct: 500 ENNDRQTPVMIHRAILGSMERFIGILTEEFAGFFPSWLAPMQAVVMNIT------DGQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E +  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVETLTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M ++  +        + 
Sbjct: 614 KDLGSMDVDVFVEKLQQEIRSR 635


>gi|225387532|ref|ZP_03757296.1| hypothetical protein CLOSTASPAR_01285 [Clostridium asparagiforme
           DSM 15981]
 gi|225046368|gb|EEG56614.1| hypothetical protein CLOSTASPAR_01285 [Clostridium asparagiforme
           DSM 15981]
          Length = 584

 Score =  258 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 143/442 (32%), Gaps = 39/442 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L   M      G   +LP G    + +    RE   R 
Sbjct: 179 QYLTMMEEAKKRDHRKLGKELGLF--MFADEGPGFPFFLPKGMTLKNTLIDYWREIHLRE 236

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+S P + S  LW  SG +D Y   M      +++     P +      ++++   S
Sbjct: 237 GYQEVSTPIILSRKLWENSGHWDHYKDNMYT-TVIDEEDFAVKPMNCPGGMLVYKNTPHS 295

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++ L  R E   +  G+MR R F   DA+ F    +          +    
Sbjct: 296 YRELPLRVGELGLVHRHEKSGQLHGLMRVRCFTQDDAHIFMRDDQIEDEIKGVTRLI--- 352

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                             +      E+ V   T       S +  +          +D+ 
Sbjct: 353 ----------------NEVYSQFGFEYFVELSTRPEDSMGSDEDWEMATNGLRKALEDMG 396

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   L DSL    +     ++    F    ++ L  +A   
Sbjct: 397 LDYIVNEGDGAFYGPKIDFH---LRDSLGRTWQCGTIQLD----FQMPQRFDLEYTAE-- 447

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               K   + +     G++     ++     GK  +W   V    I +       +   D
Sbjct: 448 -DGNKKRPIMIHRVCFGSIERFIGILIEHFAGKFPVWLAPVQVKVIPV------SEKSMD 500

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +Y +L   G     D   E++G +   A L   P  +++G K  ++  + ++ R  
Sbjct: 501 YATGVYEKLKAAGIRTELDHKDEKVGYKIRQAQLEKVPFMLVLGEKEAAEGAITVRSRDK 560

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G      LE  I          
Sbjct: 561 GDLGAAQLEAFIGDVKRMIETK 582


>gi|15597940|ref|NP_251434.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|116050734|ref|YP_790445.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891076|ref|YP_002439942.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
 gi|254241197|ref|ZP_04934519.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa 2192]
 gi|313107813|ref|ZP_07793987.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
 gi|22654141|sp|Q9I099|SYT_PSEAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122259859|sp|Q02NP1|SYT_PSEAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701406|sp|B7V188|SYT_PSEA8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|9948822|gb|AAG06132.1|AE004702_9 threonyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|115585955|gb|ABJ11970.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126194575|gb|EAZ58638.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa 2192]
 gi|218771301|emb|CAW27066.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
 gi|310880489|gb|EFQ39083.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
          Length = 640

 Score =  258 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRRIGKQLDLF--HLQEEAPGMVFWHPNGWSVYQVLEQYMRKVQRDHG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      IF   +KSY
Sbjct: 289 YVEVRTPQVVDRILWERSGHWSNYAENMFT-TSSESRDYAVKPMNCPCHVQIFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  K +        L++
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEEQVKKEA-ADFIKLTLQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E                   D    +     ++   
Sbjct: 407 YRDFGFTDIAMKLSTRPAKRVGSDE-----------------LWDRAEGALADALNESGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L  N +      +              + A++  
Sbjct: 450 AWEYQPGEGAFYGPKIEF---TLKDCLGRNWQCGTLQYDPNLP--------ERLDASYIA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++    +     +P  +AP +  ++NI        D
Sbjct: 499 EDNNRKRPVMLHRAILGSFERFIGMLI---EHYAGAFPAWLAPTQAVVMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FAAEVVRILGESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVESKAVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +     +   S  
Sbjct: 613 EDLGSMPVTQFAELLAQAVSRR 634


>gi|91201672|emb|CAJ74732.1| strongly similar to threonyl-tRNA synthetase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 640

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 154/445 (34%), Gaps = 35/445 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD       L L +        G+  W P G +    +    R+E  R
Sbjct: 228 KKYLKMLEEAEKRDHRKIGKDLDLFSFH-EDGGAGLAFWHPKGARMRSIIEDFWRQEHFR 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +   +LW  SG +D Y + M    D +    I  P +      I+++ + 
Sbjct: 287 RGYEILYSPHIAKINLWKTSGHWDFYRESMYSPIDVDGHEYILKPMNCPFAVLIYKTKLH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + ++   +R E      G++R R F   DA+ F  TP+  +    ++     
Sbjct: 347 SYRDLPLRWGELGTVYRYERSGVLHGLLRVRGFTQDDAHIFC-TPDQLEQEILEVIKLAQ 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G     +      + G    E          +     D  D    +     +  
Sbjct: 406 FMLSSFGFNEYEIELS---VRGKGEKE----------KYIGRDDVWDHAEDALKIALEKT 452

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               + +E     Y    D+   K+ D++    +     ++    F    ++       +
Sbjct: 453 GLHYTRMEGEAKFYGPAIDI---KVKDAIGRGWQGPTIQVD----FNLPERFD----VNY 501

Query: 303 KGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G+DG  H  V +    +GAM      +     G   +W           + I +     
Sbjct: 502 VGSDGYHHRVVMIHRTVMGAMERFIGCLIEHFAGDFPLW------IAPIQMRILSITDAQ 555

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +K+   L      V  D    +IG +     L   P  +IVG+K + +  V ++ R
Sbjct: 556 IDYAKKLQTELLLKNFRVECDIGNNKIGYKIREGTLQKIPYLLIVGNKEMEEGLVAVRSR 615

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
             G    + + + I+         +
Sbjct: 616 KNGDEGALPVRDFISKVEEEVRGKK 640


>gi|300818358|ref|ZP_07098568.1| threonyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|300821407|ref|ZP_07101554.1| threonyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300525910|gb|EFK46979.1| threonyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300528998|gb|EFK50060.1| threonyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|323158484|gb|EFZ44500.1| threonyl-tRNA synthetase [Escherichia coli E128010]
 gi|323175213|gb|EFZ60827.1| threonyl-tRNA synthetase [Escherichia coli LT-68]
 gi|323180497|gb|EFZ66042.1| threonyl-tRNA synthetase [Escherichia coli 1180]
 gi|323186265|gb|EFZ71617.1| threonyl-tRNA synthetase [Escherichia coli 1357]
          Length = 622

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 431 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 479

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 480 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSE 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 534 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 594 KDLGSMDVNEVIEKLQQEIRSR 615


>gi|302391179|ref|YP_003826999.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203256|gb|ADL11934.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Acetohalobium
           arabaticum DSM 5501]
          Length = 639

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/439 (19%), Positives = 152/439 (34%), Gaps = 41/439 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      KL L +  +H   KG   + P G    + +    +EE  + G  E
Sbjct: 239 RLEEAKKRDHRKLGQKLDLFS--LHDEGKGFPFFHPKGMVVRNELIDFWKEEHRQAGYKE 296

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + + DLW +SG +D Y ++M    + + +     P +      +++  ++SYR+L
Sbjct: 297 IKTPVILNQDLWKQSGHWDHYKEDM-YFTEIDKEPHAVKPMNCPGGILVYKDKMRSYRDL 355

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    ++ L  R E      G+MR R F   DA+ F L P   +     +     RI+  
Sbjct: 356 PIRMGELGLVHRHERSGTLHGLMRVRNFTQDDAHIFCL-PSQIEEELTGVIKLVDRIYAP 414

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G                      V   T   +   S +  D    +     +       
Sbjct: 415 FGFNYR------------------VELSTKPDKAMGSDELWDKATDALREAIEANDLDYK 456

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           + E   A Y    D H E              R  + G +     +       T+ G DG
Sbjct: 457 VNEGDGAFYGPKIDFHLED----------CLGRTWQCGTV-QLDFQMPERFDLTYVGQDG 505

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           ++H    +     G++     ++   + G    W   +AP +  +I +        D   
Sbjct: 506 EEHRPVMIHRAIFGSLERFMGILIEHYAGAFPTW---LAPIQTEVIPVTDDH---LDYAY 559

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++   L+  G  V  D   E++G +   A +   P  +IVG   + D  V ++ R  G  
Sbjct: 560 QVKEELADAGVRVEVDARQEKVGYKIREAQVQQVPYMLIVGDDEIEDKTVSVRDRREGDL 619

Query: 427 EDMSLEEVINYASHRFSNN 445
               L E          N 
Sbjct: 620 GAKDLAEFKAEIVKEIENR 638


>gi|161503559|ref|YP_001570671.1| threonyl-tRNA synthetase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160864906|gb|ABX21529.1| hypothetical protein SARI_01637 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 622

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDE-VNACIRMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 388 YSTFGFEKIVVKLSTRPDKRIGSDE-----------------MWDRAEADLAVALEENNI 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 431 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 479

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 480 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSE 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 534 YVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + EVI        + 
Sbjct: 594 KDLGSLDVNEVIEKLQQEIRSR 615


>gi|188533977|ref|YP_001907774.1| threonyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
 gi|238689736|sp|B2VEM1|SYT_ERWT9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188029019|emb|CAO96887.1| Threonyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
          Length = 642

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 140/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYE 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKEAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P                      S D  D           +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKR-----------------IGSDDLWDRSEADLAAALKENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    + S    A++ G
Sbjct: 451 PFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              +    V +    +G+M     ++   + G    W   V    +++           +
Sbjct: 500 ESNERQVPVMIHRAILGSMERFIGILTEEYAGFFPTWLAPVQVVVMNIT------DGQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G     D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVAELTRKLQNAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + EVI        + 
Sbjct: 614 KDLGSIDVNEVIAKLQDEIRSR 635


>gi|326623540|gb|EGE29885.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 622

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDE-VNACIRMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 388 YSTFGFEKIVVKLSTRPDKRIGSDE-----------------MWDRAEADLAVALEENNI 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 431 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 479

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 480 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSE 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 534 YVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + +VI        + 
Sbjct: 594 KDLGSLDVNDVIEKLQQEIRSR 615


>gi|307545104|ref|YP_003897583.1| threonyl-tRNA synthetase [Halomonas elongata DSM 2581]
 gi|307217128|emb|CBV42398.1| threonyl-tRNA synthetase [Halomonas elongata DSM 2581]
          Length = 632

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 147/443 (33%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD    + KL L    + + + G+  W P G      V   +R+ 
Sbjct: 226 KQLKAYLKRLEEAEKRDHRKLARKLDLF--HMQEEAPGMVFWHPRGWTLWQVVEQYMRQV 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P +    LW +SG +D+Y   M    +   +     P +      +F S
Sbjct: 284 YKDGGYQEIRCPQVMDVSLWKKSGHWDNYADGMF-FTESEKREYALKPMNCPGHVQVFNS 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR LP  + +     R+E      G+MR R F   D + F    +      +    
Sbjct: 343 GLRSYRELPVRYGEFGGCHRNEPSGALHGIMRVRAFTQDDGHVFCTEEQIEPEVTSFHRQ 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L+++   G + I ++    P                           D    +     
Sbjct: 403 -ALQVYRDFGFEDIAVKIALRPEKR-----------------LGDDAVWDRAEEALRGAL 444

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                    +    A Y    + H   + D L    +V    ++       G        
Sbjct: 445 RTCDVDWDELPGEGAFYGPKIEYH---MKDCLGREWQVGTMQVDFMMPVRLG-------- 493

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   DG+      +    +G+M     ++   + G   +W        +++       
Sbjct: 494 AQYVAEDGERRSPVMLHRAIVGSMERFIGILIEHYAGAMPLWLAPQQAVVLTIT------ 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              RD    +  RL K G  V  D   E+IG +     L   P  ++VG K V    V +
Sbjct: 548 DAQRDYATYLEQRLQKKGLRVKADLRNEKIGFKIREHTLQKVPYLLVVGDKEVEADSVAV 607

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R       M+++  I+     
Sbjct: 608 RSRSGEDLGTMTVDAFIDRIQAE 630


>gi|83647272|ref|YP_435707.1| threonyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
 gi|123753567|sp|Q2SDJ2|SYT_HAHCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|83635315|gb|ABC31282.1| threonyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
          Length = 637

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 147/441 (33%), Gaps = 38/441 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      KL L    + + + G+  W   G      +   +R++  +  
Sbjct: 231 YLHRIEEAEKRDHRKIGKKLGLF--HMQEEAPGMVFWHSDGWTLYQVIEQYMRKQLRKHD 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG ++ +  +M       D+     P +      +F   ++SY
Sbjct: 289 YKEIKTPQVVERTLWEKSGHWEKFRDDMFT-TQSEDRDFAIKPMNCPCHVQVFNQGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +    K       +
Sbjct: 348 RDLPLRLAEFGSCHRNEASGALHGLMRVRGFTQDDAHIFC-TEEQIQEEVGKFIDFLHEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  +  + P     S E    ++        +K      +P E         
Sbjct: 407 YADFGFSEIIYKLSTRPEKRVGSDEIWDKSEKALADALDAKGLPWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++       G +Y          
Sbjct: 458 --------GAFYGPKVEF---SLKDCLGRLWQCGTVQVDFSMPGRLGAQY-------VSD 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              +   V +    +G+      ++   ++G    W   +AP +++++NI        D 
Sbjct: 500 EQVRKTPVMLHRAILGSFERFIGILIEHYEGAFPSW---LAPTQVAILNITDK---QADY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           C+KI   L+  G  V  D   E+I  +     L   P   +VG K V    + I+ R   
Sbjct: 554 CKKIGEILNDKGFRVRLDLRNEKINYKIREHTLNRVPFLAVVGDKEVETQCLAIRTRQGE 613

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS+        +  +  
Sbjct: 614 DLGVMSISAFEELLQNEEAKR 634


>gi|213650865|ref|ZP_03380918.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 622

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDE-VNACIRMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 388 YSTFGFEKIVVKLSTRPDKRIGSDE-----------------MWDRAEADLAVALEENNI 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 431 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 479

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 480 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSE 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 534 YVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + +VI        + 
Sbjct: 594 KDLGSLDVNDVIEKLQQEIRSR 615


>gi|167034477|ref|YP_001669708.1| threonyl-tRNA synthetase [Pseudomonas putida GB-1]
 gi|189083619|sp|B0KKR8|SYT_PSEPG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166860965|gb|ABY99372.1| threonyl-tRNA synthetase [Pseudomonas putida GB-1]
          Length = 640

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W   G      +   +R  Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKQLDLF--HLQEEAPGMVFWHANGWTVYQVLEQYMRGVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG + +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQVVDRILWERSGHWSNYAENMFT-TSSESRDYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +  K +        L +
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIFCTEEQVKKEA-ADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E    A+T                 +     ++   
Sbjct: 407 YKDFGFSDIAMKLSTRPAKRVGSEELWDRAET-----------------ALADALNESGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L  N +      +              + A++  
Sbjct: 450 EWEYQPGEGAFYGPKIEF---TLRDCLGRNWQCGTLQYDPNLP--------ERLDASYIA 498

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D      V +    +G+      ++    +    ++P  +AP +  ++NI        D
Sbjct: 499 EDNSRVRPVMLHRAILGSFERFIGMLI---EHYAGVFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L+  G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVEKSLNGSGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVETQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +     +   S  
Sbjct: 613 ADLGSMPVAQFAELLTQAVSRR 634


>gi|71066652|ref|YP_265379.1| threonyl-tRNA synthetase [Psychrobacter arcticus 273-4]
 gi|123775558|sp|Q4FPW3|SYT_PSYA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71039637|gb|AAZ19945.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Psychrobacter
           arcticus 273-4]
          Length = 644

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 141/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q 
Sbjct: 228 LKTYIQRIEEAEKRDHRKIGKALNLF--HMQEQAPGMVFWHANGWTIYQVLEQYMRKVQQ 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P +    LW  SG + +Y   M        +     P +      +F   +
Sbjct: 286 DNGYEEIKTPQIVDRSLWERSGHWGNYATNMFT-TSSEKRDYAVKPMNCPCHVQVFNQGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +          
Sbjct: 345 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TQSQIQQEVADFIKLT 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L ++   G  +I M+  + P     S E                   DF   +     D+
Sbjct: 404 LAVYEDFGFNNIIMKLSTRPEKRVGSDE-----------------SWDFAEKALADALDN 446

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                + +    A Y    +     L DSL    +     ++              + A 
Sbjct: 447 SGLDWAYLPGEGAFYGPKIEF---SLKDSLGRVWQCGTIQVDPNMP--------ERLDAE 495

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           F     +    + +    +G+      ++  ++ G   +W        +++         
Sbjct: 496 FVNEQNEREVPIMLHRAILGSFERFIGILIENYAGWMPVWLAPQQVVVMNIT------DK 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +ACE +   L K G     D   E+IG +     L   P  +++G K V    V ++ 
Sbjct: 550 QAEACENVVNELKKSGLRAISDLRNEKIGFKIREKTLERIPYMLVLGDKEVESGSVNVRT 609

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       MS+ E I       +  
Sbjct: 610 REGENLGVMSVAEFIILVETAVAEK 634


>gi|329895719|ref|ZP_08271123.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC3088]
 gi|328922195|gb|EGG29550.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC3088]
          Length = 641

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 135/446 (30%), Gaps = 42/446 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L      + + G+  W P G      +   +R  Q 
Sbjct: 228 LKQYLNRIAEAEKRDHRRIGKQLDLF--HTQEEAPGMVFWHPKGWTVYQVIEQYMRNRQR 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P +    LW +SG  D +G +M  L    D+     P +      +F   +
Sbjct: 286 QEGYKEIKTPQVVDMTLWHKSGHADKFGDDMFMLK-AEDREFAVKPMNCPCHVQVFNQGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +      ++     
Sbjct: 345 KSYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTEDQIQPE-VSRFIDFL 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G   +  R  + P     S E    A+        + +     +P E      
Sbjct: 404 HGVYEDFGFNEVIYRLSTRPEKRVGSEEDWDRAEKALADALDAHNLPWELLPGE------ 457

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y    +     L D +    ++    ++                A 
Sbjct: 458 -----------GAFYGPKIEF---SLKDCIGRVWQLGTIQVDFSMPGRLD--------AQ 495

Query: 302 FKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +   DG      M    I     R +  +IE                             
Sbjct: 496 YVAEDGARKTPVMLHRAILGSFERFIGILIEHFEGRFPTWLAPEQVAVMNIT-------D 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  + +   L+  G     D   E+IG +     L   P  ++VG K V    V ++
Sbjct: 549 KQGEFTQNVVDYLNNSGFRAIADLRNEKIGFKIRERTLAKIPYLLVVGDKEVETQSVAVR 608

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       M+L +   Y      + 
Sbjct: 609 TRDGKDLGTMTLADFAEYLRQDVGSR 634


>gi|301327449|ref|ZP_07220684.1| threonyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|309793489|ref|ZP_07687916.1| threonyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|312969746|ref|ZP_07783929.1| threonyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|300845961|gb|EFK73721.1| threonyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|308123076|gb|EFO60338.1| threonyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|310338031|gb|EFQ03120.1| threonyl-tRNA synthetase [Escherichia coli 1827-70]
          Length = 622

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 431 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 479

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           D
Sbjct: 480 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSD 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 534 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 594 KDLGSMDVNEVIEKLQQEIRSR 615


>gi|197118372|ref|YP_002138799.1| threonyl-tRNA synthetase [Geobacter bemidjiensis Bem]
 gi|238690868|sp|B5EBX9|SYT_GEOBB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|197087732|gb|ACH39003.1| threonyl-tRNA synthetase [Geobacter bemidjiensis Bem]
          Length = 636

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 154/443 (34%), Gaps = 40/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  W P G      +    R+E  + G
Sbjct: 232 YLARIEEAKKRDHRKLGRELDLFS-FNDEVGAGLVIWHPKGAMLRTILEDFERKEHLKRG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   +LW  SG Y++Y + M      ++++    P +      I+RS ++SY
Sbjct: 291 YDIVLGPQILKTELWQRSGHYENYRENM-YFTTVDEQSYGVKPMNCLAHMMIYRSQLRSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  ++++    R E      G++R R F   DA+    TPE        +      +
Sbjct: 350 RDLPLRYFELGTVHRHERAGVLHGLLRVRGFTQDDAHILC-TPEQLDAEIKGVIQFVTEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G                   EF +   T   +   S D  +    +      D   
Sbjct: 409 MGIFG------------------FEFEMELSTRPEKSIGSDDAWELATNALLNALKDSGR 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   KL D+L    + +    +    F    ++      T+  
Sbjct: 451 PYEINEGDGAFYGPKIDI---KLRDALDRRWQCATIQCD----FTLPERFD----LTYVD 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+      +    +GA+     V+     G    W   V    +++            
Sbjct: 500 ADGEKKRPVMVHRVILGAIERFIGVLIEHFAGNFPTWLAPVQATIVTVT------DNQIP 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +  + +L   G  V  D   E++G +   A L   P  ++VG K V    +  + R  
Sbjct: 554 YAQAAFDKLRAAGIRVQKDFRNEKLGFKIREAQLQKIPYMLVVGDKEVESGMLAPRFRDG 613

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
              E M+ E+ +++      + +
Sbjct: 614 KNLESMTPEQFVSFIESEVKSYK 636


>gi|229167201|ref|ZP_04294942.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228616239|gb|EEK73323.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
          Length = 639

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 156/447 (34%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q
Sbjct: 231 KLEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQ 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N     E+  P + + +LW +SG +  Y   M   ++ + K+    P +      +F++ 
Sbjct: 289 NEYNYQEVRTPFMMNQELWEKSGHWGHYKDNM-YFSEVDHKSFALKPMNCPGHMLMFKNK 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +     R E      G++R R F   DA+   +TPE  +     +   
Sbjct: 348 LHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVLAQ 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G                   E+ V   T            +    +      
Sbjct: 407 IDYVYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAELALENVLQ 448

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     + E   A Y    D H   + D+L  + +     ++    F    K+      
Sbjct: 449 SLNYKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTVQLD----FQMPEKFD----L 497

Query: 301 TFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   + +      +    +G++    A++     G   +W        + +  I   + 
Sbjct: 498 NYIDENNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPLWVA-----PVQVKVIPVSNA 552

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V      ++  +L++ G  V  D   E++G +   A +   P  +++G K +    V ++
Sbjct: 553 VHVQYANEVADKLAQAGIRVERDIRDEKLGYKIREAQMQKVPYVLVIGDKEMESEAVNVR 612

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
                  E + L+  +        N +
Sbjct: 613 KYGEEKSEVIELDAFVESMKEEIKNRK 639


>gi|227885859|ref|ZP_04003664.1| threonine--tRNA ligase [Escherichia coli 83972]
 gi|300898493|ref|ZP_07116830.1| threonyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|300917719|ref|ZP_07134368.1| threonyl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300930805|ref|ZP_07146177.1| threonyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300951319|ref|ZP_07165163.1| threonyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300958608|ref|ZP_07170733.1| threonyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|301050944|ref|ZP_07197793.1| threonyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|301647910|ref|ZP_07247687.1| threonyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|227837432|gb|EEJ47898.1| threonine--tRNA ligase [Escherichia coli 83972]
 gi|300297398|gb|EFJ53783.1| threonyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|300314733|gb|EFJ64517.1| threonyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|300357845|gb|EFJ73715.1| threonyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|300415120|gb|EFJ98430.1| threonyl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300449416|gb|EFK13036.1| threonyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300461363|gb|EFK24856.1| threonyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|301073967|gb|EFK88773.1| threonyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|312946320|gb|ADR27147.1| threonyl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C]
 gi|313649261|gb|EFS13695.1| threonyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|315618916|gb|EFU99499.1| threonyl-tRNA synthetase [Escherichia coli 3431]
 gi|323169354|gb|EFZ55030.1| threonyl-tRNA synthetase [Shigella sonnei 53G]
 gi|323186901|gb|EFZ72219.1| threonyl-tRNA synthetase [Escherichia coli RN587/1]
 gi|324007092|gb|EGB76311.1| threonyl-tRNA synthetase [Escherichia coli MS 57-2]
 gi|332090644|gb|EGI95739.1| threonyl-tRNA synthetase [Shigella boydii 5216-82]
 gi|332093917|gb|EGI98970.1| threonyl-tRNA synthetase [Shigella dysenteriae 155-74]
 gi|332759227|gb|EGJ89536.1| threonyl-tRNA synthetase [Shigella flexneri K-671]
 gi|332762542|gb|EGJ92807.1| threonyl-tRNA synthetase [Shigella flexneri 4343-70]
 gi|332767218|gb|EGJ97413.1| threonyl-tRNA synthetase [Shigella flexneri 2930-71]
 gi|333018198|gb|EGK37500.1| threonyl-tRNA synthetase [Shigella flexneri K-304]
          Length = 622

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 431 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 479

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 480 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSE 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 534 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 594 KDLGSMDVNEVIEKLQQEIRSR 615


>gi|152988735|ref|YP_001347870.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
 gi|166225481|sp|A6V485|SYT_PSEA7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150963893|gb|ABR85918.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
          Length = 640

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRRIGKQLDLF--HLQEEAPGMVFWHPNGWSVYQVLEQYMRKVQRDHG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      IF   +KSY
Sbjct: 289 YVEVRTPQVVDRILWERSGHWSNYAENMFT-TASESRDYAVKPMNCPCHVQIFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  K +        L++
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEEQVKKEA-ADFIKLTLQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E                   D    +     ++   
Sbjct: 407 YRDFGFTDIAMKLSTRPAKRVGSDE-----------------LWDRAEGALADALNESGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L  N +      +              + A++  
Sbjct: 450 AWEYQPGEGAFYGPKIEF---TLKDCLGRNWQCGTLQYDPNLP--------ERLDASYIA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++    +     +P  +AP +  ++NI        D
Sbjct: 499 EDNNRKRPVMLHRAILGSFERFIGMLI---EHYAGAFPAWLAPTQAVVMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FAAEVVRILGESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVESKAVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +     +   S  
Sbjct: 613 EDLGSMPVTQFAELLAQAVSRR 634


>gi|300904575|ref|ZP_07122412.1| threonyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300403488|gb|EFJ87026.1| threonyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|315257476|gb|EFU37444.1| threonyl-tRNA synthetase [Escherichia coli MS 85-1]
          Length = 622

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 431 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 479

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           D
Sbjct: 480 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSD 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 534 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 594 KDLGSMDVNEVIEKLQQEIRSR 615


>gi|50121350|ref|YP_050517.1| threonyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
 gi|73919790|sp|Q6D4G8|SYT_ERWCT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49611876|emb|CAG75325.1| threonyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
          Length = 642

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 145/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   + + + RD      +L L    + + + G+  W   G      + A +R +  
Sbjct: 229 LASYLQRLEEASKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    +W ++G +D+Y + M       ++     P +      IF   +
Sbjct: 287 SYQYQEVKGPFMMDRVMWEKTGHWDNYKEAMFT-TSSENREYCIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +      N      
Sbjct: 346 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G + I ++  + P     S E                   D           +
Sbjct: 405 YDMYSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAAALTE 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +      A Y    +     L D L    +     ++    F    + S    A+
Sbjct: 448 NNIEFAYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----AS 496

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G   +    V +    +G+M     ++     G    W   V    I++         
Sbjct: 497 YVGESNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIINIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L + G  V  D   E+IG +     L   P  ++ G K V   KV ++ 
Sbjct: 551 QSDYVNELTQKLQEAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       + + EVI+       + 
Sbjct: 611 RRGKDLGSLDVSEVISKLQQEIRSR 635


>gi|329115958|ref|ZP_08244675.1| threonine--tRNA ligase [Streptococcus parauberis NCFD 2020]
 gi|326906363|gb|EGE53277.1| threonine--tRNA ligase [Streptococcus parauberis NCFD 2020]
          Length = 648

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 158/448 (35%), Gaps = 34/448 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRTLERYITDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P + S +L+  SG ++ Y ++M    D  D +  +  P +      ++++H
Sbjct: 287 ASGYQHVYTPPMASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    ++ +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R                       + + + +  +          D+
Sbjct: 407 IDVYEDFNLTDYRFRLS-------------YRDPKDTHKYYDNDEMWENAQAMLKAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L   + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I             +          I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPHQV----TVIPISNEAH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 IDYAWEVAKTLRDRGIRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKAVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRF-SNNRPV 448
            +      S+EE ++         +RPV
Sbjct: 619 GSKATHTESIEEFVDNILADIARKSRPV 646


>gi|56475898|ref|YP_157487.1| threonyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
 gi|73919766|sp|Q5P7X5|SYT_AZOSE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56311941|emb|CAI06586.1| threonyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
          Length = 638

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 143/442 (32%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L    I + + G+  W   G      V   +R      G
Sbjct: 231 YLHMLEEAEKRDHRKLGRLLDLF--HIQEEAPGMVFWHAKGWTLWQQVEQYMRRTILDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D Y  E++       +     P +      IF   +KSY
Sbjct: 289 YQEVKTPQIVDRSLWEKSGHWDMY-SELMFTTQSEKRDYAVKPMNCPCHIQIFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +         ++
Sbjct: 348 RDLPLRMAEFGSCHRNEPSGALHGIMRVRNFVQDDAHIFCADEQVQTEA-AAFIELLQKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P                      + D  D    +     D    
Sbjct: 407 YADFGFTEILIKLSTRPDKR-----------------VGTDDQWDAAEAALAAALDAQGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++       G        A +  
Sbjct: 450 AYDLQPGEGAFYGPKIEF---SLKDCLNRVWQCGTLQLDFNLPVRLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D   HY   +    +G++     ++   + G   +W   V    +++       +   D
Sbjct: 499 EDNAKHYPVMLHRAILGSLERFIGILIEHYAGALPLWLAPVHAVVLNI------SEGQTD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  RL + G  V  D   E+I  +     +   P Q+++G K  +   V ++ R  
Sbjct: 553 YATEVARRLKQAGFRVEADLRNEKINYKIREHSVHKLPYQIVIGEKEKAAGVVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M L+ +I          
Sbjct: 613 QDLGQMPLDTLIERWQREIEAR 634


>gi|327252835|gb|EGE64489.1| threonyl-tRNA synthetase [Escherichia coli STEC_7v]
          Length = 622

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 431 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 479

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G   IW   V    +++           +
Sbjct: 480 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPIWLAPVQVVIMNIT------DSQSE 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 534 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 594 KDLGSMDVNEVIEKLQQEIRSR 615


>gi|170721151|ref|YP_001748839.1| threonyl-tRNA synthetase [Pseudomonas putida W619]
 gi|229558042|sp|B1J6U4|SYT_PSEPW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169759154|gb|ACA72470.1| threonyl-tRNA synthetase [Pseudomonas putida W619]
          Length = 640

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKQLDLF--HLQEEAPGMVFWHANGWTVYQVLEQYMRQVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG + +Y + M        +     P +      +F   +KSY
Sbjct: 289 YSEIKTPQVVDRILWERSGHWSNYAENMFT-TSSESRDYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +  K +        L +
Sbjct: 348 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFVQDDAHIFCTEDQVKKEA-ADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + M+  + P     S E                   D    +     ++   
Sbjct: 407 YKDFGFTDVAMKLSTRPAKRVGSEE-----------------LWDRAEGALADALNESGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L  N +      +              + A++  
Sbjct: 450 EWEYQPGEGAFYGPKIEF---TLRDCLGRNWQCGTLQYDPNLP--------ERLDASYIA 498

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  +   V +    +G+      ++    +    ++P  +AP +  ++NI        D
Sbjct: 499 EDNARKRPVMLHRAILGSFERFIGMLI---EHYAGVFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L+  G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALQVEKSLNGSGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVETQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + + +   +H  S  
Sbjct: 613 ADLGSMPVAQFVELLTHAVSRR 634


>gi|146306290|ref|YP_001186755.1| prolyl-tRNA synthetase [Pseudomonas mendocina ymp]
 gi|166980142|sp|A4XRQ7|SYP_PSEMY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145574491|gb|ABP84023.1| prolyl-tRNA synthetase [Pseudomonas mendocina ymp]
          Length = 571

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 114/237 (48%), Positives = 161/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V  ++REE
Sbjct: 1   MRTSQFLLSTLKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR+  YG E+LR+ DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPAIQPAELWQESGRWVQYGPELLRVKDRHEREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  +F RLGL   P++A++G IGG  SHEF VLA++GE  +    +  D+    E  
Sbjct: 181 YCNVFSRLGLNFRPVQADTGSIGGTGSHEFHVLAESGEDDIAF-SNVSDYAANIEKA 236



 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/193 (37%), Positives = 110/193 (56%), Gaps = 4/193 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M+    G +GK   +
Sbjct: 378 PLPTVADLRNVVAGDPSPDGQGTLEIKRGIEVGHIFQLGTKYSEAMNCQVLGENGKPVTL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE +HD +GI+W D++APF I+L+ ++   +  R+A +K+YA L
Sbjct: 438 TMGCYGIGVSRVVAAAIEQNHDERGILWNDALAPFHIALVPLRYETEQVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  +    G +FA  +L+G P +V+V  + +++  +E K R     + + 
Sbjct: 498 TAAGYEVLLDDRDKKTSPGIKFADMELIGIPHRVVVSDRGLAEGNLEYKSRAETEAQAVP 557

Query: 431 LEEVINYASHRFS 443
           L E++ +   R S
Sbjct: 558 LAEILPFLQARIS 570


>gi|300924761|ref|ZP_07140703.1| threonyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|300419049|gb|EFK02360.1| threonyl-tRNA synthetase [Escherichia coli MS 182-1]
          Length = 642

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           D
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVQSGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KDLGSMDVNEVIEKLQQEIRSR 635


>gi|319794591|ref|YP_004156231.1| threonyL-tRNA synthetase [Variovorax paradoxus EPS]
 gi|315597054|gb|ADU38120.1| threonyl-tRNA synthetase [Variovorax paradoxus EPS]
          Length = 635

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 140/443 (31%), Gaps = 38/443 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L    I + + G+  W P G      V   +R     T
Sbjct: 230 QYIQRIEEAEKRDHRKLGKELDLF--HIDEVAPGVVFWHPKGWAVWQAVEQYMRGIYRDT 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    LW ++G + +Y   M    +   +     P +      IF+S ++S
Sbjct: 288 GYWEVKGPQILDKSLWEKTGHWQNYRDNMFT-TESEKREYALKPMNCPGHVLIFKSDLRS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + +     R+E      G+MR R F   D + F    +              +
Sbjct: 347 YRDLPLRYGEFGQCHRNEPSGALHGIMRVRGFTQDDGHIFCTEDQILDECIAYT-EQLQK 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   I  +  + P     S E                   D    +         
Sbjct: 406 VYADFGFTDILYKVATRPENRVGSDE-----------------LWDKAEHAVMESLRRSG 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I     A Y    +     L D++    +     ++       G +Y         
Sbjct: 449 VDFIISPGDGAFYGPKIEY---TLRDAIGRQWQCGTMQVDFNTAERLGGEY-------VT 498

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + G+ H V +    +G++     ++   H G    W           + +    +   D
Sbjct: 499 ESSGRAHPVMLHRAIVGSLERFIGMLIEHHSGALPAW------LAPVQVAVLNISEGQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAAQVAKTLQNQGLRVQLDLHNEKITYKIRKHSLQKLPYILVVGDKEKEAGAVAVRARGN 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                MSLE  +       ++ R
Sbjct: 613 QDLGAMSLESFVQRLVQDVADKR 635


>gi|312795972|ref|YP_004028894.1| Threonyl-tRNA synthetase [Burkholderia rhizoxinica HKI 454]
 gi|312167747|emb|CBW74750.1| Threonyl-tRNA synthetase (EC 6.1.1.3) [Burkholderia rhizoxinica HKI
           454]
          Length = 643

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 142/440 (32%), Gaps = 41/440 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    + + + G+  W P G      V   +R      G
Sbjct: 239 YLHMLEEAEKRDHRKLGKQLDLF--HLQEEAPGLVFWHPKGWALWQQVEQYLRRRLGEAG 296

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F   + SY
Sbjct: 297 YLEVKTPMIMDRSLWERSGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFNHSLHSY 355

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +     R+E      G+MR R F+  DA+ F    +    S        + +
Sbjct: 356 RDLPLRFAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQVIAESIAFN-SLAMSV 414

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P     + E    A+ G  +   +       +            
Sbjct: 415 YKDFGFEQIDIKLALRPQQRAGTDETWDRAEQGLREALAACSLQWQEL------------ 462

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                +   A Y    + H   + D+L  + +     ++       G        A +  
Sbjct: 463 -----DGEGAFYGPKIEYH---IKDALGRSWQCGTLQLDFVLPERLG--------AEYVA 506

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G   +W        +++       +   D
Sbjct: 507 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPLWLAPSQVVVMNIA------ESSAD 560

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L K G     D   E+I  +     L   P   +VG K      V ++ R  
Sbjct: 561 YANIVAQSLKKQGFRAAADLRNEKISYKIREHALEKVPYLAVVGDKERDAQTVAVRARGG 620

Query: 424 GIREDMSLEEVINYASHRFS 443
                M +E  +    +   
Sbjct: 621 VDLGVMPVEAFLERLHNEVR 640


>gi|170723171|ref|YP_001750859.1| prolyl-tRNA synthetase [Pseudomonas putida W619]
 gi|226701321|sp|B1JD82|SYP_PSEPW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169761174|gb|ACA74490.1| prolyl-tRNA synthetase [Pseudomonas putida W619]
          Length = 571

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 125/282 (44%), Positives = 177/282 (62%), Gaps = 10/282 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHQRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNMYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL   P++A++G IGG  SHEF VLA++GE  V  S    D+    E  +  
Sbjct: 181 YSNIFTRLGLDFRPVQADTGSIGGSYSHEFHVLAESGEDDVIFSDS-SDYAANIEKAEA- 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                   + + TA  A T ++      D+    + V   G+
Sbjct: 239 --------IPRETARLAPTEELRLVDTPDAKTIAQLVENYGL 272



 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 77/207 (37%), Positives = 114/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  +
Sbjct: 364 DDKHYFGVNWERDLPVPQVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEAL 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVVLSMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            V R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + ++D  +
Sbjct: 484 DVVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLADGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E KHR     + + L EV+ +   R  
Sbjct: 544 EYKHRTEQDAQALPLNEVLTFLQARVR 570


>gi|331663198|ref|ZP_08364108.1| threonine--tRNA ligase [Escherichia coli TA143]
 gi|331683225|ref|ZP_08383826.1| threonine--tRNA ligase [Escherichia coli H299]
 gi|331058997|gb|EGI30974.1| threonine--tRNA ligase [Escherichia coli TA143]
 gi|331079440|gb|EGI50637.1| threonine--tRNA ligase [Escherichia coli H299]
          Length = 642

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KDLGSMDVNEVIEKLQQEIRSR 635


>gi|205352944|ref|YP_002226745.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|238690498|sp|B5RAX3|SYT_SALG2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|205272725|emb|CAR37641.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628018|gb|EGE34361.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 642

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMGRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDE-VNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPDKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + +VI        + 
Sbjct: 614 KDLGSLDVNDVIEKLQQEIRSR 635


>gi|253577580|ref|ZP_04854892.1| threonyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251843049|gb|EES71085.1| threonyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 645

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 166/442 (37%), Gaps = 37/442 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L + T   +   +G+  WLP G      +   I + + R G 
Sbjct: 235 LHMLEEAKKRDHRKLGKELNIFT-FNNLVGQGLPIWLPKGATVRRTLERYIVDIEERLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + DL+  SG ++ Y ++M      + +  +  P +      +++S ++SYR
Sbjct: 294 QHVYTPVLGNVDLYKTSGHWEHYQEDMFPKMAIDTEEFVLRPMNCPHHMMVYKSDMRSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ ++ R E+     G+ R R   + DA+ F    +     + ++     +++
Sbjct: 354 DLPIRIAELGMQHRYEMSGALTGLHRVRSMTLNDAHIFCRLDQIKDE-FKRVLDLIKQVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS-KDFMDFPIPSENTDFDDIIS 244
           +  G+     R                  D  +T+ +    +  +          ++   
Sbjct: 413 NDFGIHEYRFRLS--------------YRDPQDTEKYYQNDEMWNTAQRMLREVVEEAGL 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  +L + + +S   I+    F    ++       + G
Sbjct: 459 PFFEAEGEAAFYGPKLDV---QIKTALGKEETLSTVQID----FLLPERF----ELEYVG 507

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H   +     +G M    A +    +      P  +AP +  ++ + ++      
Sbjct: 508 DDGQKHRPVVLHRGILGTMERFTAFLL---ENFAGNLPLWLAPVQAKVLPVSSN---FDA 561

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G     D   E++G +   A L   P  ++VG    +   V ++ R  
Sbjct: 562 YARQVEDKLRAAGIRAESDLRNEKLGYKIREAQLEKLPYMLVVGENEQNAGTVSVRKRGQ 621

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G     +++EVI        N+
Sbjct: 622 GDLGAKAVDEVIAQLQEEIRNH 643


>gi|138896280|ref|YP_001126733.1| threonyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|134267793|gb|ABO67988.1| Threonyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 649

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 166/442 (37%), Gaps = 32/442 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G
Sbjct: 234 YLQLLEEAKERDHRKLGKELELFTT-SQKVGQGLPLWLPKGATIRRLIERYIVDKEIALG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S +L+  SG +D Y + M    + +++ ++  P +      I++S + SY
Sbjct: 293 YDHVYTPVLGSVELYKTSGHWDHYKENMFPPMEMDNEELVLRPMNCPHHMMIYKSKLHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++    R E+     G+ R R   + DA+ F    +     + ++    L +
Sbjct: 353 RELPIRIAELGTMHRYEMSGALTGLQRVRGMTLNDAHIFVRPDQIKDE-FKRVVNLILEV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL     R                       + +   +  +          D++  
Sbjct: 412 YKDFGLDEYSFRLSYRDPQDKE-------------KYYDDDEMWEKAQRMLREAMDELGL 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+ G
Sbjct: 459 DYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFD----LTYIG 507

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGK H   +     G +  +   +    +     +P  +AP ++ +I +    +   D 
Sbjct: 508 EDGKPHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVEVIPV--SSEAHLDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++   L   G  V  D+  E+IG +   A +   P  ++VG K  ++  V ++     
Sbjct: 564 AYEVKQALQVNGFRVEVDERDEKIGYKIREAQMQKIPYMLVVGDKEAAERAVNVRRYGEK 623

Query: 425 IREDMSLEEVINYASHRFSNNR 446
             E ++L++ I          R
Sbjct: 624 ESETVALDKFIAMLEEDVRQKR 645


>gi|229133217|ref|ZP_04262049.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|228650236|gb|EEL06239.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
          Length = 639

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 155/447 (34%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q
Sbjct: 231 KLEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQ 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N     E+  P + + +LW +SG +  Y   M   ++ + K+    P +      +F++ 
Sbjct: 289 NEYNYQEVRTPFMMNQELWEKSGHWGHYKDNM-YFSEVDHKSFALKPMNCPGHMLMFKNK 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +     R E      G++R R F   DA+   +TPE  +     +   
Sbjct: 348 LHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVLAQ 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G                   E+ V   T            +    +      
Sbjct: 407 IDYVYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAELALENVLQ 448

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     + E   A Y    D H   + D+L  + +     ++    F    K+      
Sbjct: 449 SLNYKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTVQLD----FQMPEKFD----L 497

Query: 301 TFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   + +      +    +G++    A++     G    W        + +  I   + 
Sbjct: 498 NYIDENNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNA 552

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V      +I  +L++ G  V  D   E++G +   A +   P  +++G K +    V ++
Sbjct: 553 VHEKYANRIADKLAQAGIRVERDIRDEKLGYKIREAQMQKVPYVLVIGDKEMESEAVNVR 612

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
                  E + L+  +        N +
Sbjct: 613 KYGEEKSEVVELDAFVESMKEEIKNRK 639


>gi|218548710|ref|YP_002382501.1| threonyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|226701412|sp|B7LQ71|SYT_ESCF3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|218356251|emb|CAQ88868.1| threonyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|324113470|gb|EGC07445.1| threonyl-tRNA synthetase [Escherichia fergusonii B253]
          Length = 642

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KDLGSMDVNEVIEKLQQEIRSR 635


>gi|15802131|ref|NP_288153.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 EDL933]
 gi|15831680|ref|NP_310453.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|168762217|ref|ZP_02787224.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|168788115|ref|ZP_02813122.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|168800100|ref|ZP_02825107.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|187776029|ref|ZP_02799987.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|188024843|ref|ZP_02774486.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|189010441|ref|ZP_02807141.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189402338|ref|ZP_02781727.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|189403439|ref|ZP_02795487.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|208810744|ref|ZP_03252620.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208816647|ref|ZP_03257767.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|209400429|ref|YP_002270789.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|217328990|ref|ZP_03445071.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254793336|ref|YP_003078173.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|291282899|ref|YP_003499717.1| Threonyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|22654116|sp|Q8XE27|SYT_ECO57 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238065112|sp|B5YQ07|SYT_ECO5E RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|12515733|gb|AAG56706.1|AE005395_2 threonine tRNA synthetase [Escherichia coli O157:H7 str. EDL933]
 gi|13361893|dbj|BAB35849.1| threonine tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|187769425|gb|EDU33269.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|188016225|gb|EDU54347.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|189000290|gb|EDU69276.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189356196|gb|EDU74615.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|189360618|gb|EDU79037.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|189367509|gb|EDU85925.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|189372060|gb|EDU90476.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|189377572|gb|EDU95988.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|208725260|gb|EDZ74967.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208730990|gb|EDZ79679.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|209161829|gb|ACI39262.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|209768828|gb|ACI82726.1| threonine tRNA synthetase [Escherichia coli]
 gi|209768830|gb|ACI82727.1| threonine tRNA synthetase [Escherichia coli]
 gi|209768832|gb|ACI82728.1| threonine tRNA synthetase [Escherichia coli]
 gi|209768834|gb|ACI82729.1| threonine tRNA synthetase [Escherichia coli]
 gi|209768836|gb|ACI82730.1| threonine tRNA synthetase [Escherichia coli]
 gi|217318337|gb|EEC26764.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254592736|gb|ACT72097.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|290762772|gb|ADD56733.1| Threonyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|320188406|gb|EFW63068.1| Threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212]
 gi|320652208|gb|EFX20506.1| threonyl-tRNA synthetase [Escherichia coli O157:H- str. H 2687]
 gi|320657809|gb|EFX25571.1| threonyl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658384|gb|EFX26078.1| threonyl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905]
 gi|326342086|gb|EGD65867.1| Threonyl-tRNA synthetase [Escherichia coli O157:H7 str. 1044]
 gi|326343638|gb|EGD67400.1| Threonyl-tRNA synthetase [Escherichia coli O157:H7 str. 1125]
          Length = 642

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   K+ ++ R  
Sbjct: 554 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 614 KDLGSMDVNEVIEKLQQEIRSR 635


>gi|293392211|ref|ZP_06636545.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952745|gb|EFE02864.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 643

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 155/447 (34%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ + +L  L+E   RD       L L    + + + G+  W   G      +   +R +
Sbjct: 227 KQLEAYLHRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P +    LW ++G + +Y  +++      ++     P +      IF  
Sbjct: 285 LKQYDYQEVKGPFMMDRVLWEKTGHWQNY-GDLMFTTSSENREYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F +  +           
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCMPDQVESE-VTSCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G ++I ++  + P     S E                   D          
Sbjct: 403 MVYDIYSTFGFENIKVKLSTRPEKRIGSDE-----------------MWDKAEADLAKAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +       I E   A Y    +     L DSL    +     ++    F+   +    ++
Sbjct: 446 EHNGLSYEIQEGEGAFYGPKLEF---ALTDSLDREWQCGTIQLD----FFLPER----LN 494

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A++ G D +      +    +G++     +I   + G   +W        +++       
Sbjct: 495 ASYVGEDNERKIPVMIHRAILGSIERFIGIITEEYAGFFPVWLAPTQAVVMNIT------ 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  +K+  +LS  G  V  D   E++G +     L   P  ++ G K +   KV +
Sbjct: 549 DSQSEYVQKVAKQLSDAGLRVKTDLRNEKVGFKIREHTLHRVPYMLVCGDKEIEAGKVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R        ++EE ++    +  N 
Sbjct: 609 RTRKGQDLGTFTVEEFLDILKKQVRNR 635


>gi|310767522|gb|ADP12472.1| threonyl-tRNA synthetase [Erwinia sp. Ejp617]
          Length = 642

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 139/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLLRIEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKEAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N         
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMVYDT 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P                      S D  D           +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKR-----------------IGSDDLWDRSEADLAAALKENDI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    +    ++A++ G
Sbjct: 451 PFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGR----LNASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              +    V +    +G+M     ++   + G    W   V    +++           +
Sbjct: 500 ESNERQVPVMIHRAILGSMERFIGILTEEYAGFFPTWLAPVQVVVMNIT------DGQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G     D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVAELTRKLQNAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + E I        + 
Sbjct: 614 KDLGSIDVNEAIAKLQDEIRSR 635


>gi|260551943|ref|ZP_05825805.1| threonyl-tRNA synthetase [Acinetobacter sp. RUH2624]
 gi|260405346|gb|EEW98841.1| threonyl-tRNA synthetase [Acinetobacter sp. RUH2624]
          Length = 640

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 142/441 (32%), Gaps = 38/441 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG   +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQIVDFTLWEKSGHAANYAENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  K          L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTKEQIGKE-VADFIQLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P                           D    S     D    
Sbjct: 407 YKDFGFEEVQMKLSTRPEKR-----------------VGDDALWDLAEKSLADALDAAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +      +    F    +           
Sbjct: 450 KWELQPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQCD----FNLPVRLDASY---VTE 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +D  V +    +G+      ++    +      P  ++P +  ++NI        +A
Sbjct: 500 ENERDQPVMLHRAILGSFERFIGILI---EHYAGFMPPWLSPVQACVMNIT---DAQAEA 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R   
Sbjct: 554 SEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGK 613

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS++  I+      +  
Sbjct: 614 NLGTMSVDAFIDLVKSAVAER 634


>gi|259908578|ref|YP_002648934.1| threonyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|224964200|emb|CAX55707.1| Threonyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|283478547|emb|CAY74463.1| thrS [Erwinia pyrifoliae DSM 12163]
          Length = 642

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 139/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLLRIEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKEAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N         
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMVYDT 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P                      S D  D           +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKR-----------------IGSDDLWDRSEADLAAALKENDI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    +    ++A++ G
Sbjct: 451 PFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGR----LNASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              +    V +    +G+M     ++   + G    W   V    +++           +
Sbjct: 500 ESNERQVPVMIHRAILGSMERFIGILTEEYAGFFPTWLAPVQVVVMNIT------DGQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G     D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVAELTRKLQNAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + E I        + 
Sbjct: 614 KDLGSIDVNEAIAKLQDEIRSR 635


>gi|148264672|ref|YP_001231378.1| threonyl-tRNA synthetase [Geobacter uraniireducens Rf4]
 gi|146398172|gb|ABQ26805.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Geobacter
           uraniireducens Rf4]
          Length = 645

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 151/441 (34%), Gaps = 41/441 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      +L L +    +   G+  W P G      +    R+E  R G
Sbjct: 241 YLARLEEAKRRDHRKLGKELDLFS-FSDEVGAGLVIWHPKGAMLRTILEDFERKEHFRRG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   +LW  SG YD+Y + M    + +++     P +      I++S ++SY
Sbjct: 300 YDIVVGPQILKTELWQRSGHYDNYRENM-YFTEVDEQGYGIKPMNCLAHMMIYKSQLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  ++++    R E      G++R R F   DA+      +        +      +
Sbjct: 359 RDLPLRYFELGTVHRHERAGVLHGLLRVRGFTQDDAHILCTPEQLDGE-IKGVLSFVKDV 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G +       + P     S E                   +    +      D   
Sbjct: 418 MGIFGFEYEM-ELSTRPEKSIGSDE-----------------DWERATKALLGALQDSGR 459

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   KL D+L    + +    +    F    ++      T+ G
Sbjct: 460 PFEINEGDGAFYGPKIDI---KLRDALDRRWQCATIQCD----FTLPERFD----LTYIG 508

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+      +    +GA+     V+     G   +W   V    +++            
Sbjct: 509 ADGEKKRPVMVHRVILGAIERFIGVLIEHFAGSFPVWLAPVQAIVLTVT------DNQVS 562

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +IY  L   G  V  D   E++G +   A L   P  +I+G K V    V  + R  
Sbjct: 563 YANEIYTALRAAGIRVQQDFRNEKLGFKIREAQLQKIPYMLIIGDKEVESGMVTPRFRDG 622

Query: 424 GIREDMSLEEVINYASHRFSN 444
              + M   E+I +      +
Sbjct: 623 NNLDSMKPAELIEFIEKEVKS 643


>gi|261867949|ref|YP_003255871.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413281|gb|ACX82652.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 643

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 155/447 (34%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ + +L  L+E   RD       L L    + + + G+  W   G      +   +R +
Sbjct: 227 KQLEAYLHRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P +    LW ++G + +Y  +++      ++     P +      IF  
Sbjct: 285 LKQYDYQEVKGPFMMDRVLWEKTGHWQNY-GDLMFTTSSENREYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F +  +           
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCMPDQVESE-VTSCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G ++I ++  + P     S E                   D          
Sbjct: 403 MVYDIYSTFGFENIKVKLSTRPEKRIGSDE-----------------MWDKAEADLAKAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +       I E   A Y    +     L DSL    +     ++    F+   +    ++
Sbjct: 446 EHNSLSYEIQEGEGAFYGPKLEF---ALTDSLDREWQCGTIQLD----FFLPER----LN 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A++ G D +    V +    +G++     +I   + G    W        +++       
Sbjct: 495 ASYVGEDNERKVPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQVVVMNIT------ 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  +K+  +LS  G  V  D   E++G +     L   P  ++ G K +   KV +
Sbjct: 549 DSQSEYVQKVAKQLSDAGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIEAGKVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R        ++EE ++    +  N 
Sbjct: 609 RTRKGQDLGTFTVEEFLDILKKQVRNR 635


>gi|258544548|ref|ZP_05704782.1| threonine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
 gi|258520179|gb|EEV89038.1| threonine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
          Length = 639

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/438 (15%), Positives = 141/438 (32%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y     +   RD      +L      + + + G+  W   G      +   +R +  + G
Sbjct: 232 YLQQQAEAEKRDHRRIGKQLDFF--HLQEEAPGMVFWHAKGWVIYREIENYMRGKLRKYG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D +G  M      ++      P +      IF   ++SY
Sbjct: 290 YEEVQGPQILDRSLWEKSGHWDKFGGNMFTC-CIDEHDYAIKPMNCPGHIQIFNQGLRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + +  +  R+E      G+MR R F+  D + F    +  +    ++      +
Sbjct: 349 RELPVRYAEFGICHRNEPSGTLHGLMRVRRFVQDDGHIFCTRSQIREE-IERVCQMVYEV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +H  G   + +   + P     S E                   D          +    
Sbjct: 408 YHDFGFDEVELALSTRPEKRVGSDE-----------------IWDEAEADLQAALEAQGK 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L DSL    +     ++       G        A +  
Sbjct: 451 PFRLQPGEGAFYGPKIEF---TLKDSLGRRWQCGTVQLDFSMPERLG--------AHYID 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +        +    +G++     ++    +      P  ++P +  ++ I        D
Sbjct: 500 ENDVRQTPVMIHRAILGSLERFIGILI---EQYAGQMPLWLSPVQAVVMPIT---DAQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +  +L+  G  V  D   E+I  +     L   P  ++ G +  + S V ++ R  
Sbjct: 554 YATAVAEKLATAGLRVEKDLRNEKINYKIREHTLQRVPFMLVAGDREKAASSVSVRQRDG 613

Query: 424 GIREDMSLEEVINYASHR 441
                MS++++I +    
Sbjct: 614 KDLGVMSVDDLITHLQQL 631


>gi|324326401|gb|ADY21661.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 639

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 155/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALANVLHSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 CKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              ++I  +L++ G  V  D  GE++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYADEIADKLAQAGVRVERDVRGEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E + L   +        N +
Sbjct: 616 EEKSEVIELNGFVESIKEEIKNKK 639


>gi|332878705|ref|ZP_08446422.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683342|gb|EGJ56222.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 647

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 158/446 (35%), Gaps = 38/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L T   ++  +G+  WLP G    + + A +R+ Q 
Sbjct: 227 LTEYLTLLEEAKKRDHRKLGKELELFT-FSNKVGQGLPLWLPKGAALRERLEAFLRKAQK 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
             G  ++  P +   +L+V SG +D YGK+  +        +  +  P +     +I+ S
Sbjct: 286 EAGYEQVVTPHIGHKNLYVTSGHWDKYGKDSFQPIATPNEGEEYLLKPMNCPHHCEIYNS 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           H  SY++LP  F +    +R E      G+ R R F   DA+ F  TPE     +  +  
Sbjct: 346 HPWSYKDLPKRFAEFGTVYRYEQSGELHGLTRVRCFTQDDAHIFC-TPEQLDAEFKHVID 404

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG  +   +                  D      +   D       +   + 
Sbjct: 405 LVLYVFGSLGFDNFTAQVSLR--------------DPDNPTKYIGTDENWAKAENAIINA 450

Query: 240 DDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                LN ++E    A Y    D     + D+L  + ++    ++               
Sbjct: 451 AKEKGLNYVIETGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERF 499

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +KGAD + H    +     G+M    A++     G   +W         +   + + 
Sbjct: 500 DLWYKGADNEMHRPVMIHRAPFGSMERFVAILLEHTAGNFPLW------LNPNQAIVLSL 553

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +  +K+   L         D+  E +G +   A+    P  +IVG     +  V 
Sbjct: 554 SEKYENYAQKVLRLLENSDIRTLIDNRAETMGKKIREAETQKVPYMLIVGENEEKEGTVS 613

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ R       MS+E      +   +
Sbjct: 614 VRKRGGEDLGSMSVEAFAKLINDEVA 639


>gi|239827997|ref|YP_002950621.1| threonyl-tRNA synthetase [Geobacillus sp. WCH70]
 gi|259516491|sp|C5D639|SYT_GEOSW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239808290|gb|ACS25355.1| threonyl-tRNA synthetase [Geobacillus sp. WCH70]
          Length = 644

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/440 (18%), Positives = 162/440 (36%), Gaps = 30/440 (6%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  LQE   RD      +L L      +  +G+  WLP G      +   I +++   G
Sbjct: 234 YLRQLQEAKERDHRKLGKELELFMT-SQKVGQGLPLWLPKGATIRRIIERYIVDKEIELG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S +L+  SG +D Y   M    + +++ ++  P +      I++S I SY
Sbjct: 293 YQHVYTPVLGSVELYKTSGHWDHYKDNMFPPMEMDNEQLVLRPMNCPHHMMIYKSKIHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++    R E+      ++    +  +     + P+  K  + ++    L ++
Sbjct: 353 RELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKDEFKRVVNLILEVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL     R                       + +   +  +          D++   
Sbjct: 413 KDFGLDEYSFRLSYRDPHDKE-------------KYYDDDEMWEKAQNMLREAMDELGLE 459

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+ G 
Sbjct: 460 YYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFD----LTYIGE 508

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DGK H   +     G +  +   +    +     +P  +AP ++ +I +        D  
Sbjct: 509 DGKPHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVEVIPVSP--AAHLDYA 564

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            K+   L   G  V  D+  E+IG +   A +   P  ++VG K ++++ V ++      
Sbjct: 565 YKVKEALQSQGFRVEVDERDEKIGYKIREAQIQKIPYMLVVGDKEMAENAVNVRKYGEQK 624

Query: 426 REDMSLEEVINYASHRFSNN 445
            E MSL++ I         N
Sbjct: 625 SETMSLDDFIAALKAEVRRN 644


>gi|188025947|ref|ZP_02960307.2| hypothetical protein PROSTU_02247 [Providencia stuartii ATCC 25827]
 gi|188021023|gb|EDU59063.1| hypothetical protein PROSTU_02247 [Providencia stuartii ATCC 25827]
          Length = 653

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 143/443 (32%), Gaps = 40/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 243 YLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRTKLKAYN 300

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  +G +++Y   M       ++     P +      IF   +KSY
Sbjct: 301 YQEVKGPFMMDRVLWERTGHWENYKDAMFT-TSSENREYCVKPMNCPGHVQIFNQGLKSY 359

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +               +
Sbjct: 360 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEDQILSE-VTDCIKMIYDV 418

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P                      + D  D           D   
Sbjct: 419 YATFGFEKIVVKLSTRPEKR-----------------IGTDDMWDTAEADLAQALKDQGI 461

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F+   +    ++A++ G
Sbjct: 462 EFEYQPGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FFLPGR----LNASYVG 510

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G++     ++   + G    W        +++           D
Sbjct: 511 ENNERIVPVMIHRAVLGSLERFIGILTEEYAGFFPTWLAPQQVVVMNIT------DTQAD 564

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++ ++L  VG     D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 565 YVQELVSKLQSVGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVSVRTRRG 624

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                + + E  N       + +
Sbjct: 625 KDLGSLDVNEFTNKLLEEIRSRQ 647


>gi|327402300|ref|YP_004343138.1| Ser-tRNA(Thr) hydrolase [Fluviicola taffensis DSM 16823]
 gi|327317808|gb|AEA42300.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Fluviicola
           taffensis DSM 16823]
          Length = 647

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/447 (19%), Positives = 163/447 (36%), Gaps = 38/447 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L T    +  +G+  WLP G    + +   +++ Q 
Sbjct: 228 LTEYLERVEEAKRRDHRKVGKELELFT-FSQKVGQGLPLWLPKGAALRERLENFLKKAQR 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRS 120
           + G  ++  P + + +L+V SG Y+ YG +  +       D+  +  P +     +I++S
Sbjct: 287 KAGYEQVITPHIGNKELYVTSGHYEKYGADSFQAIKTPDPDEEFLLKPMNCPHHCEIYKS 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP  F +    +R E      G+ R R F   DA+ F  T +  K  + K+  
Sbjct: 347 KPRSYKDLPARFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TQDQVKEEFKKVID 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L IF  L  ++   +                  D      +   D       S   + 
Sbjct: 406 LVLYIFKTLDFQNFKAQISLR--------------DPENPSKYIGSDENWEKAESAIIEA 451

Query: 240 DDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
               +L ++VE    A Y    D     + D+L    ++    ++               
Sbjct: 452 AAEKNLPTVVELGEAAFYGPKLDFM---VQDALGREWQLGTIQVDYNLP--------ERF 500

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + GAD + H    +     G+M    AV+     G   +W           + I   
Sbjct: 501 ELEYTGADNQKHRPVMIHRAPFGSMERFVAVLLEHCGGDFPLW------LATDQVAILPI 554

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  + +   L+      F DD  E+IG +   A+L   P  ++VG K   + +V 
Sbjct: 555 SDKYNEYAKDVLELLNNSDIRGFVDDRNEKIGKKIREAELKKIPFMLVVGEKEAEEKQVS 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ R  G +  MS++      +     
Sbjct: 615 VRQRGEGDKGSMSIDAFAAIVNQAIEK 641


>gi|288818602|ref|YP_003432950.1| threonyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288788002|dbj|BAI69749.1| threonyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308752193|gb|ADO45676.1| threonyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
          Length = 637

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 92/441 (20%), Positives = 162/441 (36%), Gaps = 42/441 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            +   RD       L      I       G+  WLP G      +    REE  + G   
Sbjct: 235 EEAKKRDHRKLGRDLE---FFIIDEDVGPGLVLWLPKGGIYRKILEDYWREEHLKRGYQF 291

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + +A LW  SG  D Y   M      + +     P +      I++S ++SY+ L
Sbjct: 292 VYTPHIGNAKLWQISGHLDYYRPNMFSSMQVDQEEYFVKPMNCPFHIAIYKSKVRSYKEL 351

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    ++   +R E+     G+MR R F   DA+    T E  +   ++     + +   
Sbjct: 352 PLKLAELGTVYRYEMSGVLHGLMRVRGFTQDDAHIIC-TEEQVEDVIHQTLEFAISMLRD 410

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G                   EF V   T       S D       S     + +     
Sbjct: 411 FG-----------------FEEFKVYISTKPEDAIGSPDQWQLAENSLKKAVESMGIPYQ 453

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           I E   A Y    DV   K+ D++    + S    +    F    ++ +     + G D 
Sbjct: 454 IDEGGGAFYGPKIDV---KIKDAIGRLWQCSTIQFD----FNLPERFDM----EYVGPDN 502

Query: 308 KDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           K H    +    +G++     ++   + G   +W   ++P ++ LI I    +   D  +
Sbjct: 503 KRHRPYMIHRALLGSIERFTGILLEHYAGALPVW---LSPVQVRLIPIG---EAHMDYTK 556

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+  RL + G  V  DD  E++ ++   A++   P  +++G K VS  K+ ++ +  G  
Sbjct: 557 KLENRLKEEGLRVEVDDRDERLSAKIRDAEVQKIPYVIVIGDKEVSQGKISVRSKKEGNL 616

Query: 427 EDMSLEEVINYASHRFSNNRP 447
             MS+EE I +   +  +  P
Sbjct: 617 GSMSVEEFIKHIKDKIKSKAP 637


>gi|282599730|ref|ZP_05971662.2| threonine--tRNA ligase [Providencia rustigianii DSM 4541]
 gi|282568410|gb|EFB73945.1| threonine--tRNA ligase [Providencia rustigianii DSM 4541]
          Length = 653

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 141/443 (31%), Gaps = 40/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 243 YLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRTKLKSYN 300

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  +G +++Y   M       ++     P +      IF   +KSY
Sbjct: 301 YQEVKGPFMMDRVLWERTGHWENYKDAMFT-TSSENREYCVKPMNCPGHVQIFNQGLKSY 359

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +               +
Sbjct: 360 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEDQILSE-VTSCIEMIYDV 418

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P                      + D  D               
Sbjct: 419 YSTFGFEKIVVKLSTRPEKR-----------------IGTDDMWDTAEADLANALKSKGI 461

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F+   +    ++A++ G
Sbjct: 462 EFEYQPGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FFLPGR----LNASYVG 510

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +      +    +G++     ++   + G    W        +++           +
Sbjct: 511 ENNERITPVMIHRAVLGSLERFIGILTEEYAGFFPTWLAPQQVVVMNIT------DTQAE 564

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L  VG     D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 565 YVQELVNKLQSVGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVSVRTRRG 624

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                + ++E +        + +
Sbjct: 625 KDLGSLDVDEFMTKLLKEIRSRQ 647


>gi|315634189|ref|ZP_07889478.1| threonine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
 gi|315477439|gb|EFU68182.1| threonine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
          Length = 643

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 140/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +  +  
Sbjct: 232 YLQRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G + +Y  +++      ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWQNY-GDLMFTTQSENREYAIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +            I
Sbjct: 349 RDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIRMVYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +I ++  + P     + E                   D               
Sbjct: 408 YSTFGFTNIFVKLSTRPEKRIGADE-----------------MWDRAEEGLANALKHNGL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    +     L D L    +     ++               +A++  
Sbjct: 451 EYEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTIQLDFALPGRL--------NASYVA 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G++     +I   + G    W        +++           +
Sbjct: 500 EDNDRRTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQAVVMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +LS  G  V  D   E++G +     L   P  ++ G K +   KV ++ R  
Sbjct: 554 YVQQVAKQLSDAGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIEAGKVAVRTRKG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                 ++EE +     +  N 
Sbjct: 614 QDLGTFTVEEFLEILKKQVRNR 635


>gi|146328703|ref|YP_001209437.1| threonyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
 gi|166223338|sp|A5EVK6|SYT_DICNV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146232173|gb|ABQ13151.1| threonyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
          Length = 640

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 143/446 (32%), Gaps = 40/446 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y     +   RD       L L    + + + G+  W   G      +   +R +  + G
Sbjct: 232 YLTQQAEAEKRDHRKIGKALDLF--HLQEEAPGMVFWHAKGWTIYREIENYMRTKLRKYG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D +G  M      ++      P +      IF   +KSY
Sbjct: 290 YQEVQGPQILDRSLWEKSGHWDKFGGNMFTC-CIDNHDFAVKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + +  +  R+E      G+MR R F+  D + F    +          + Y   
Sbjct: 349 RELPIRYAEFGICHRNEPSGTLHGIMRVRRFVQDDGHIFCARNQVRVEIERTCRMVYEV- 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K++ +   + P     S E    A+ G  +   +++      P E         
Sbjct: 408 YDDFGFKNVELALSTRPEKRVGSDEIWDEAERGLQEALEAQNLAFRLQPGE--------- 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L DSL    +     ++       G        A +  
Sbjct: 459 --------GAFYGPKIEF---TLKDSLGRRWQCGTVQLDFSMPARLG--------AEYID 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G+      +    +G++     ++    +      P  ++P +  ++ I        D
Sbjct: 500 EHGEKQTPVMIHRAILGSLERFIGILI---EQYAGNMPVWLSPVQAMIMPITDTHA---D 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +  +    G     D   E+I  +     L   P  ++ G +    + + ++ R  
Sbjct: 554 YVQNVMQKFIAAGIRAEIDLRNEKISYKIREHTLQRVPFLLVAGDREKQSNTLSVRTRDG 613

Query: 424 GIREDMSLEEVINYASHRFSNNRPVL 449
                M +  +I +  H        +
Sbjct: 614 KELGVMEIATIIEHIRHLIETKSQEI 639


>gi|116872988|ref|YP_849769.1| threonyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123458497|sp|A0AJ08|SYT_LISW6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116741866|emb|CAK20990.1| threonyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 640

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 167/441 (37%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R G
Sbjct: 230 FIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SY
Sbjct: 289 YNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++ +  R E+      ++    +  +     + P+  K  + ++    L ++
Sbjct: 349 RELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
               +K    R                  D   T+ +   D M     +   +  D++  
Sbjct: 409 KDFDIKDYSFRLS--------------YRDPKNTEKYFDDDAMWEKAQAMLKSAMDEMGM 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G
Sbjct: 455 DYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIG 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   +     G +  +   +    +     +P  +AP ++ LI + A      D 
Sbjct: 504 EDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQMELIPVNA--DAHLDY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L + G     DD  E++G +   A     P  +++G + +    V ++   + 
Sbjct: 560 SKGVQDKLQRAGLRSEVDDRNEKLGYKIREAQTKKIPYALVLGDQEMEAGSVNVRRYGSK 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E M L+  I       S  
Sbjct: 620 DSETMDLDAFIAQVVAEVSKY 640


>gi|23099609|ref|NP_693075.1| threonine-tRNA ligase [Oceanobacillus iheyensis HTE831]
 gi|73919811|sp|Q8EPF3|SYT_OCEIH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|22777839|dbj|BAC14110.1| threonine-tRNA ligase [Oceanobacillus iheyensis HTE831]
          Length = 646

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 162/440 (36%), Gaps = 30/440 (6%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L IL+E   RD      +L + T    +  +G+  WLP G     NV   I + + R G 
Sbjct: 234 LQILEERKERDHRKLGKELGIFTV-SQKVGQGLPLWLPKGATIRRNVERYIVDLEERLGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + +L+  SG +D Y  +M    + +++ ++  P +      +F++ + SYR
Sbjct: 293 SHVYTPVLGNVELYKTSGHWDHYQDDMFPTMEMDNEELVLRPMNCPHHMMVFKNQLWSYR 352

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           NLP    ++    R E+      ++    +  +       P+  K  + ++      ++ 
Sbjct: 353 NLPVRIAELGTMHRHEMSGALAGLQRVRAMTLNDAHIFARPDQLKEEFIRVVELVQHVYK 412

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             G+     R                       +   + +  +          +D+    
Sbjct: 413 DFGIDDYYFRLSYRDPEDKE-------------KYVDNDEMWEKAQAMLKETMEDMNLEY 459

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV   ++  +L +++ +S   ++    F+   ++      T+ G D
Sbjct: 460 VEAEGEAAFYGPKLDV---QVKTALGKDETLSTIQLD----FHLPERFD----LTYIGED 508

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G  H   +     G +  +   +    +     +P  +AP ++ +I +    Q   D  +
Sbjct: 509 GNQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVKIIPVSL--QAHLDYAK 564

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            I  +L   G  V  D+  E+IG +   A     P  +++G K +  + V  +       
Sbjct: 565 DIEEKLRYQGVRVELDERDEKIGYKIREAQTQKVPFALVLGDKEMESNSVNYRRYGEQDT 624

Query: 427 EDMSLEEVINYASHRFSNNR 446
           E +  ++ +N       N +
Sbjct: 625 ETLEFDQFLNLIKEEVDNKK 644


>gi|223932680|ref|ZP_03624679.1| threonyl-tRNA synthetase [Streptococcus suis 89/1591]
 gi|223898650|gb|EEF65012.1| threonyl-tRNA synthetase [Streptococcus suis 89/1591]
          Length = 650

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 177/449 (39%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRTLERYITDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      ++++H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYHEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F  TPE  +  + K    
Sbjct: 347 VRSYRELPVRIAELGMMHRYEKSGALTGLQRVREMTLNDGHIFV-TPEQIQEEFKKALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDF 239
            + ++    L     R                  D  + + +  + +  +          
Sbjct: 406 IIDVYADFNLNDYRFRLS--------------YRDPEDKEKYYDNDEMWENAQRMLKGAM 451

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D++       E   A Y    D+   ++  +L   + +S   ++    F    ++     
Sbjct: 452 DEMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERF----G 500

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            T+ GADG++H   M   G+ +       I    +     +P  +AP ++++I I    +
Sbjct: 501 LTYIGADGEEHRPVMIHRGVISTMERFTAILI--ETYKGAFPTWLAPTQVTMIPISV--E 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+   L   G  V  D+  E++  +   +     P Q+IVG K + D+ V ++
Sbjct: 557 AHLDYAWKVAKELQDRGVRVHVDERNEKMQYKIRQSQTSKIPYQLIVGDKEMEDNAVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +   +  S+ E +++        +RP
Sbjct: 617 RYGSKATQTQSVSEFVDHILADIARKSRP 645


>gi|107102275|ref|ZP_01366193.1| hypothetical protein PaerPA_01003332 [Pseudomonas aeruginosa PACS2]
          Length = 621

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 212 YIQRIEEAEKRDHRRIGKQLDLF--HLQEEAPGMVFWHPNGWSVYQVLEQYMRKVQRDHG 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M        +     P +      IF   +KSY
Sbjct: 270 YVEVRTPQVVDRILWERSGHWSNYAENMFT-TSSESRDYAVKPMNCPCHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  K +        L++
Sbjct: 329 RDLPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEEQVKKEA-ADFIKLTLQV 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I M+  + P     S E                   D    +     ++   
Sbjct: 388 YRDFGFTDIAMKLSTRPAKRVGSDE-----------------LWDRAEGALADALNESGL 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L  N +      +              + A++  
Sbjct: 431 AWEYQPGEGAFYGPKIEF---TLKDCLGRNWQCGTLQYDPNLP--------ERLDASYIA 479

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++    +     +P  +AP +  ++NI        D
Sbjct: 480 EDNNRKRPVMLHRAILGSFERFIGMLI---EHYAGAFPAWLAPTQAVVMNITDK---QAD 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 534 FAAEVVRILGESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVESKAVAVRTREG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + +     +   S  
Sbjct: 594 EDLGSMPVTQFAELLAQAVSRR 615


>gi|159903594|ref|YP_001550938.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
 gi|238687108|sp|A9BAX2|SYT_PROM4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|159888770|gb|ABX08984.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
          Length = 638

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 150/442 (33%), Gaps = 41/442 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  L+E   RD      K+ L      + + G+  W P G      +   IR+  N 
Sbjct: 229 KAYINRLEEAEKRDHRKIGKKMDLF--HTQEEAPGMVFWHPNGWSIYQVLEKYIRDVLNN 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P      LW +SG +D +  +M       ++     P +      IF   +K
Sbjct: 287 NYYQEVKTPQAVDRSLWEKSGHWDKFKDDMFTTT-SENREYAIKPMNCPCHIQIFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T    +   +       
Sbjct: 346 SYRDLPIRLAEFGSCHRNEPSGALHGLMRVRNFVQDDAHIFC-TEAQVQSEVSNFIDLVF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   I ++  + P                      S+   D    + +   +  
Sbjct: 405 EVYKSFGFNEIIIKLSTRPKKR-----------------VGSEFIWDKSEKALSEALNSK 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               S +    A Y    +     L D L    +     ++                A +
Sbjct: 448 GLDWSYLPGEGAFYGPKIEF---SLKDCLNRVWQCGTIQVDFSMPSRL--------EAKY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               G+      +    +G+      ++    +     +P  +AP +I ++ I   +  C
Sbjct: 497 IDEKGEKKEPVMLHRAILGSFERFIGILI---ENYAGNFPVWLAPVQIIVMGITDRNSSC 553

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              CE +  +L   G  V  D   E+IG +     L   P  +I+G K   + K+ ++ R
Sbjct: 554 ---CESLTTKLINKGYRVKLDLRNEKIGFKIREHTLNRIPYLLIIGDKEEKEGKIAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFS 443
                  +SLEE +   +   S
Sbjct: 611 EGNDMGSISLEEFLVILNKSIS 632


>gi|117621181|ref|YP_856850.1| threonyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166223316|sp|A0KKP9|SYT_AERHH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|117562588|gb|ABK39536.1| threonyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 642

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 151/447 (33%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD      +L L    + + + G+  W   G      +   IR +
Sbjct: 227 KQLKSYLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFIRGK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW  SG ++ Y + M       ++     P +      IF  
Sbjct: 285 LKEYDYQEVKGPFMMDRVLWERSGHWEKYAQAMFT-TQSENREYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +  +     + +
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIMEEVSACIRM 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            Y       G ++I ++  + P     S E                   D    +     
Sbjct: 404 VYDVYGT-FGFENIVVKLSTRPEQRIGSDE-----------------AWDRAEAALAEAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   +     A Y    +     L D L    +     ++       G        
Sbjct: 446 VLNGLKYDLQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFALPGRLG-------- 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+ G D + H  V +    +G++     ++    +    ++P  +AP +  ++NI  + 
Sbjct: 495 ATYVGEDNERHVPVMIHRAILGSLERFIGILT---EEYAGLFPTWLAPTQAVVMNITDN- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   K+   L+  G     D   E+IG +     L   P  ++ G K V   K+ +
Sbjct: 551 --QADYAVKVAKALNDAGLRAKADLRNEKIGFKIREHTLKRVPFMLVCGDKEVEAGKIAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R         +EE+I   +      
Sbjct: 609 RTRKGADLGTYPVEELIALLTQEVQTR 635


>gi|77458158|ref|YP_347663.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
 gi|123758422|sp|Q3KEY2|SYT_PSEPF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77382161|gb|ABA73674.1| putative threonyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
          Length = 640

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 147/445 (33%), Gaps = 41/445 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPNGWTLYQVLEQYMRKVQRDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M    +   +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TESESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        + +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRAFTQDDAHIFCTEEQMQAES-AAFIKLTMDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + M+  + P     S E                   D    +     D    
Sbjct: 407 YRDFGFTDVEMKLSTRPEKRVGSDE-----------------LWDRAEAALAAALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++       G        A +  
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLDFNLPVRLG--------AEYVS 498

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  + H V +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKHPVMLHRAILGSFERFVGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G K V    V ++ R  
Sbjct: 553 FVVQVEKTLNESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDKEVEMQTVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN-RP 447
                M + +   + +   S   RP
Sbjct: 613 ADLGSMPVAQFAEFLAQAVSRRGRP 637


>gi|319651798|ref|ZP_08005923.1| threonyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317396450|gb|EFV77163.1| threonyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 643

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 169/438 (38%), Gaps = 32/438 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G     N+   I +++ R G 
Sbjct: 235 LRLLEEAKERDHRKIGKELNLFMN-SQKVGQGLPMWLPKGATIRRNIERYIVDKEERLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P + S DL+  SG +D Y ++M  + + +++ ++  P +      I+++ I SYR
Sbjct: 294 DHVYTPIMGSVDLYKTSGHWDHYQEDMFPVMEMDNEQLVLRPMNCPHHMMIYKNGIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K  + ++    L ++ 
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEEFKRVVHLILEVYK 413

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISL 245
              +     R                  D  +T+ +   D M     +      D+I   
Sbjct: 414 DFDINDYSFRLS--------------YRDPQDTEKYFDDDEMWEKAQAMLKEAMDEIGLD 459

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+   
Sbjct: 460 YFEAEGEAAFYGPKLDV---QVKTALGKDETLSTVQLD----FLLPERFD----LTYVAE 508

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DGK H   +     G +  +   +    +     +P  +AP ++ +I +     +  D  
Sbjct: 509 DGKPHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSP--DIHFDYA 564

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +++  +L   G  V  DD  E+IG +   A +   P  ++VG   V++  V ++      
Sbjct: 565 KQVREQLQAEGFRVELDDRNEKIGYKIREAQMQKTPYMLVVGDNEVAEKAVNVRKYGEQK 624

Query: 426 REDMSLEEVINYASHRFS 443
            E +S E+ I+       
Sbjct: 625 SETVSFEDFISALKAEVK 642


>gi|257095791|ref|YP_003169432.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048315|gb|ACV37503.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 641

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 143/443 (32%), Gaps = 40/443 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD      +L L        + G   W P G      +   +R  
Sbjct: 226 KALKAYLTRLEEAGKRDHRKLGAQLDLF--HFDDCAPGSVFWHPKGWALFQQLIGYMRTR 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R   +E++ P +    LW  SG + +Y + M      +++     P +      +F  
Sbjct: 284 QERADYVEVNTPDVMDRGLWETSGHWFNYREAMFTTTTEDERVFALKPMNCPGAVSLFAQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R E      G++R R F   DA+ F    +           
Sbjct: 344 RLKSYRDLPLRMAEFGKVHRYEPSGSLHGLLRVRHFTQDDAHIFCTAAQMQDEC-ASTIA 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G   + ++  + P     S E                   D    + +   
Sbjct: 403 LVFAIYRDFGFDDVAVKLSTRPANRIGSDE-----------------TWDQLEGALSGAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D +     I     A Y    +     L D++  + +     +++               
Sbjct: 446 DRMGIECRINPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVDLNLP--------ERFD 494

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++    G+      +     G++     ++   + G   +W        +++       
Sbjct: 495 ISYINERGERERPVMLHRALFGSLERFTGILIEHYSGLFPLWLAPQQAVVLNI------S 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D  + +   L +VG     D   E+IG +     L   P  ++VG    ++ +V +
Sbjct: 549 EGQSDYAKSVLQALKRVGVRATVDLRNEKIGYKIREYSLQKVPYLLVVGDMEKAEGRVAL 608

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R       + L +VI      
Sbjct: 609 RARAGEDLGSLPLADVIARLREE 631


>gi|157145991|ref|YP_001453310.1| threonyl-tRNA synthetase [Citrobacter koseri ATCC BAA-895]
 gi|157083196|gb|ABV12874.1| hypothetical protein CKO_01745 [Citrobacter koseri ATCC BAA-895]
          Length = 622

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M       ++     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWENYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDE-VNACIRMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++    ++A++ G
Sbjct: 431 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSR----LNASYVG 479

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 480 ENNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DTQSE 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 534 YVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + EVI        + 
Sbjct: 594 KDLGSLDVNEVIEKLQQEIRSR 615


>gi|307702092|ref|ZP_07639099.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307707425|ref|ZP_07643907.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307616377|gb|EFN95568.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307616579|gb|EFN95769.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
          Length = 647

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 158/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KSYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S+++ +       +N 
Sbjct: 619 GQKETQTVSVDDFVQAILADIANK 642


>gi|160871539|ref|ZP_02061671.1| threonyl-tRNA synthetase [Rickettsiella grylli]
 gi|159120338|gb|EDP45676.1| threonyl-tRNA synthetase [Rickettsiella grylli]
          Length = 642

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 144/439 (32%), Gaps = 42/439 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L    + + + G+  W P G      +   IR    +   
Sbjct: 232 LYLLKEAEKRDHRKLGKQLDLF--HVQEEAPGMVFWHPRGWTVYQRIEQYIRSCLKKAAY 289

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P L +  LW +SG +D + KEM       +      P        IF   IKSYR
Sbjct: 290 QEIQTPQLLARQLWEKSGHWDKFFKEMFT-TVTENTEFAIKPMSCPGHIQIFNQGIKSYR 348

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G++R R F+  D + F    +      +        ++
Sbjct: 349 DLPLRLAEFGSCHRNEPSGALHGLLRVRGFVQDDGHIFCTEDQIQSE-VSAFIDLLYNVY 407

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G   + ++  + P                      S    D    +     D    L
Sbjct: 408 ADFGFNDVILKLATRPEAR-----------------VGSNASWDKAEKALALALDARKGL 450

Query: 246 NS-IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L DSL    +     ++       G        A +  
Sbjct: 451 EWTYAHGEGAFYGPKIEF---SLKDSLNRIWQCGTLQVDFSMPQRLG--------AEYVN 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G+ H  V +    +G++     ++    +     +P  +AP +I ++ I         
Sbjct: 500 ERGERHVPVMLHRAILGSIERFIGILI---EHYAGHFPLWLAPTQIVIMTITDK---QHH 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++I   L  +   V  D   E+I  +     L   P Q+++G + V+  +V ++ +  
Sbjct: 554 YAKEIAQELEALALRVKLDLRNEKISFKIREHSLQKIPYQLVIGDQEVASKQVTVRRQTG 613

Query: 424 GIREDMSLEEVINYASHRF 442
                MS+ +         
Sbjct: 614 DSLGSMSVPKFYKEIRQAI 632


>gi|325497120|gb|EGC94979.1| threonyl-tRNA synthetase [Escherichia fergusonii ECD227]
          Length = 652

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 242 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYQ 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M       ++     P +      IF   +KSY
Sbjct: 300 YQEVKGPFMMDRVLWEKTGHWENYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 359 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 418 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 460

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 461 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 509

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 510 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSE 563

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 564 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 623

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 624 KDLGSMDVNEVIEKLQQEIRSR 645


>gi|254993456|ref|ZP_05275646.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J2-064]
          Length = 445

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 166/441 (37%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L    I +  +G+  WLP G      +   I +++ R G
Sbjct: 35  FIQMQKEAKERDHRKLGKELDLFANSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLG 93

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SY
Sbjct: 94  YNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSY 153

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++ +  R E+      ++    +  +     + P+  K  + ++    L ++
Sbjct: 154 RELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVY 213

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
               +K    R                  D   T+ +   D M     +   +  D++  
Sbjct: 214 KDFDIKDYSFRLS--------------YRDPKNTEKYFDDDAMWEKAQAMLKSAMDEMEM 259

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G
Sbjct: 260 DYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIG 308

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   +     G +  +   +    +     +P  +AP ++ LI + A      D 
Sbjct: 309 EDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQMELIPVNA--DAHLDY 364

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L + G     DD  E++G +   A     P  +++G + V    V ++   + 
Sbjct: 365 AKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRYGSK 424

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E M L+  I       S  
Sbjct: 425 DSETMDLDAFIAQVVAEVSKY 445


>gi|304397616|ref|ZP_07379493.1| threonyl-tRNA synthetase [Pantoea sp. aB]
 gi|304354788|gb|EFM19158.1| threonyl-tRNA synthetase [Pantoea sp. aB]
          Length = 642

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 138/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKEAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHVFCTEEQVRDE-VNSCIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGTDE-----------------MWDRAEEDLAAALNENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F         + AT+ G
Sbjct: 451 EFEFQPGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLP----KRLEATYVG 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +        +    +G+M     ++     G    W   +    +++           +
Sbjct: 500 ENNDRQTPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPLQVVVMNIT------DGQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E +  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVESLTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M ++  +        + 
Sbjct: 614 KDLGSMDVDVFVAKLQQEVRSR 635


>gi|255320853|ref|ZP_05362027.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262380254|ref|ZP_06073409.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SH164]
 gi|255302022|gb|EET81265.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262298448|gb|EEY86362.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SH164]
          Length = 640

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHPNGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG   +Y   M        +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQIVDFTLWEKSGHAANYADNMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +             L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTKEQIGPE-VADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P                           D    S     D    
Sbjct: 407 YKDFGFEDVQMKLSTRPEKR-----------------VGDDALWDMAEKSLADALDAAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +      +    F    +    + A+F  
Sbjct: 450 EWELQPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQCD----FNLPER----LDASFVT 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +      +    +G+      ++    +      P  +AP +  ++NI         
Sbjct: 499 EDNERDQPVMLHRAILGSFERFIGILI---EHYAGFMPPWLAPVQACVMNITDS---QAQ 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           ACE++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R  
Sbjct: 553 ACEQVVAKLKENGIRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS++   +      +  
Sbjct: 613 KNLGTMSIDAFNDLVKVAVAER 634


>gi|195937403|ref|ZP_03082785.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024]
 gi|261227789|ref|ZP_05942070.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258046|ref|ZP_05950579.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK966]
 gi|320641567|gb|EFX10955.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. G5101]
 gi|320646926|gb|EFX15759.1| threonyl-tRNA synthetase [Escherichia coli O157:H- str. 493-89]
 gi|320668281|gb|EFX35108.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61]
          Length = 622

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNI 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 431 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 479

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 480 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSE 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +LS  G  V  D   E+IG +     L   P  ++ G K V   K+ ++ R  
Sbjct: 534 YVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTRRG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI        + 
Sbjct: 594 KDLGSMDVNEVIEKLQQEIRSR 615


>gi|21231898|ref|NP_637815.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767974|ref|YP_242736.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991100|ref|YP_001903110.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|25453287|sp|Q8P7Z2|SYT_XANCP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81306049|sp|Q4UW57|SYT_XANC8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229558465|sp|B0RRG9|SYT_XANCB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21113622|gb|AAM41739.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573306|gb|AAY48716.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167732860|emb|CAP51054.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 636

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 137/438 (31%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 234 YILRMEEADKRDHRKIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 292 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 351 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIEAEVTAFHQQALAV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P                           D    +  +       
Sbjct: 410 YTAFGFDDIQIKIALRPEKR-----------------LGDDATWDKAEAALRSALGVCGV 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L D++    ++    ++       G        A +  
Sbjct: 453 EWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 501

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               K H V +    +G+M     ++   H G    W   V     ++           +
Sbjct: 502 EHSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPAWLAPVQVVVANIT------DAQAE 555

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R  
Sbjct: 556 YVDSVRKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSG 615

Query: 424 GIREDMSLEEVINYASHR 441
                M++   I      
Sbjct: 616 EDLGTMTVSAFIERLQAE 633


>gi|330720856|gb|EGG99050.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC2047]
          Length = 639

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 136/440 (30%), Gaps = 42/440 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             KY   + + + RD    + KL L    + + + G+  W   G      V   +R+ Q+
Sbjct: 229 LKKYLNFLEEASKRDHRKLAKKLDLF--HLQEEAPGMVFWHAKGWSIYQTVEQYMRKVQH 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P L    LW  SG  D +G EM   +   +K     P +      +F   +
Sbjct: 287 DNGYQEIKTPQLVDFSLWERSGHADKFGDEMF-SSHSENKDYAVKPMNCPCHVQVFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    +     R+E      G+MR R F+  DA+ F       +          
Sbjct: 346 RSYRDLPLRLAEFGCCHRNEPSGTLQGLMRVRGFVQDDAHIFCA-ESQIQDEVASFIDLL 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G   + ++  + P     S E                   D    +     D+
Sbjct: 405 YSVYQDFGFDDVLVKLSTRPEKRVGSDE-----------------VWDKAEEALQLALDN 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +     A Y    +     L D L    +     ++                A 
Sbjct: 448 KGIAWELQPGEGAFYGPKIEF---SLRDCLGRVWQCGTIQVDFSMPGRLD--------AQ 496

Query: 302 FKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +   DG      M    I     R +  +IE              A              
Sbjct: 497 YVAEDGSRQVPVMLHRAILGSFERFIGILIEHFAGAFPAWLAPEQAAIVNIT-------D 549

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              + C  +   L   G  VF D   E+IG +     +   P  ++VG K +   ++ ++
Sbjct: 550 SQAEYCRNVEKTLRNKGFRVFSDLRNEKIGFKIREHSIQKIPYVLVVGDKEMEAGQIAVR 609

Query: 420 HRLTGIREDMSLEEVINYAS 439
            +       MS+E      +
Sbjct: 610 TQKGEDLGSMSIEAFCERLT 629


>gi|317047868|ref|YP_004115516.1| threonyl-tRNA synthetase [Pantoea sp. At-9b]
 gi|316949485|gb|ADU68960.1| threonyl-tRNA synthetase [Pantoea sp. At-9b]
          Length = 642

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 138/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKEAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEDQVRDE-VNSCIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + E    A+    +                    +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGTDEMWDRAEVDLAEAL-----------------KENQI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F         + AT+ G
Sbjct: 451 PFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLP----KRLDATYVG 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +        +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 ENNDRQTPVMIHRAILGSMERFIGILTEEFAGFFPSWLAPVQAVVMNIT------DSQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVSELTKKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGEKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M ++  +        + 
Sbjct: 614 KDLGSMDVDVFVEKLQQEIRSR 635


>gi|228985474|ref|ZP_04145631.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774239|gb|EEM22648.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 639

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 153/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALANVLHSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              ++I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYADEIADKLAQAGVRVERDVRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E + L   +        N +
Sbjct: 616 EEKSEVIELNGFVESIKEEIKNKK 639


>gi|145634324|ref|ZP_01790034.1| threonyl-tRNA synthetase [Haemophilus influenzae PittAA]
 gi|145268304|gb|EDK08298.1| threonyl-tRNA synthetase [Haemophilus influenzae PittAA]
          Length = 643

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 146/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 QYDYQEVKGPFMMDRVLWEKTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P     S E    A+ G                        
Sbjct: 405 YDIYSTFGFTNIAVKLSTRPENRIGSDEMWDRAEAGLAAALVHN---------------- 448

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                AT
Sbjct: 449 -GLEYEIQEGEGAFYGPKIEF---ALRDCLGREWQCGTVQLDFALPGRLD--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE      ++  + 
Sbjct: 611 RKGADLGTFTVEEFAEILKNQVRSR 635


>gi|270261557|ref|ZP_06189830.1| threonyl-tRNA synthetase [Serratia odorifera 4Rx13]
 gi|270045041|gb|EFA18132.1| threonyl-tRNA synthetase [Serratia odorifera 4Rx13]
          Length = 642

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      + A +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N+       +
Sbjct: 349 RDLPLRMGEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVRAE-VNECIRMVYDV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + +    A+                         +   
Sbjct: 408 YGTFGFEKIAVKLSTRPEKRIGTDDMWTRAE-----------------EDLAAALTENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++       G        A++ G
Sbjct: 451 PFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFFLPGRLG--------ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G+M     ++   + G    W   V    +++           D
Sbjct: 500 ENNDRVVPVMIHRAILGSMERFIGILTEEYAGFYPTWIAPVQVVVMNIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L + G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVQQLTKKLQEAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + EV++       + 
Sbjct: 614 KDLGSLDVNEVVDKLLKEIRSR 635


>gi|327463110|gb|EGF09431.1| threonine--tRNA ligase [Streptococcus sanguinis SK1]
          Length = 647

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 152/445 (34%), Gaps = 32/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             KY     +   RD      +L L   MI  +  +G+  WLP G      +   I +++
Sbjct: 228 LKKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKE 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRS 120
             +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ 
Sbjct: 286 LASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKH 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SYR LP    +I +  R E       ++    +  +     +TPE  +  + +    
Sbjct: 346 HVHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R            +     D  E          +          D
Sbjct: 406 IIDVYADFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALD 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 453 EMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I   +         +     +    I   ++ 
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEA 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++ 
Sbjct: 558 HIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                   + ++E +       +N 
Sbjct: 618 YGQKETHTIPVDEFVEQILADIANK 642


>gi|229155963|ref|ZP_04284064.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228627570|gb|EEK84296.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
          Length = 639

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 153/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALANVLHSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              ++I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYADEIADKLAQAGVRVERDVRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E + L   +        N +
Sbjct: 616 EEKSEVIELNGFVESIKEEIKNKK 639


>gi|34496803|ref|NP_901018.1| threonyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
 gi|73919781|sp|Q7NYC6|SYT_CHRVO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|34102658|gb|AAQ59023.1| threonyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
          Length = 633

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 84/438 (19%), Positives = 158/438 (36%), Gaps = 40/438 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    +   + G+  W P G +   NV   +R + N  G
Sbjct: 231 YLYMLEEAEKRDHRKLGVQLDLF--HLQDEAPGMVFWHPKGWQLWQNVEQYMRAKLNHEG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +  A+LW  SG   +Y + M  + +   +     P +      IF S ++SY
Sbjct: 289 YKEVRTPMMMDANLWERSGHAANYRENMF-ITESEKRDYAVKPMNCPGHVQIFNSGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  D + F    + ++ +        + +
Sbjct: 348 RDLPLRYAEFGSCHRNEPSGALHGIMRVRGFVQDDGHIFCTEDQINQEA-KDFHRLVMEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + R G   + ++    P            A+ G  +   +       +P E         
Sbjct: 407 YDRFGFDKVAIKLALRPEKRIGEESTWDKAEEGMREALRACGVEWEELPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     ++    F    +      A    
Sbjct: 458 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLD----FMLPERLDAEYVA---D 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +   V +    +G++     ++  +H G   +W   V    +++       +   + 
Sbjct: 500 DNSRKRPVMLHRAALGSLERFLGILIENHAGAFPLWLAPVQMVVMNIT------EAQAEY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +I   L K G  V  D   E+IG +     L   P Q+IVG K  +D  V ++ R   
Sbjct: 554 AAEIAKELEKQGFRVELDLRNEKIGYKIREHSLQKLPYQIIVGDKEKADGLVAVRARGE- 612

Query: 425 IREDMSLEEVINYASHRF 442
               ++LE          
Sbjct: 613 DLGQLTLEAFAARLKAEM 630


>gi|42781481|ref|NP_978728.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|42737404|gb|AAS41336.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 10987]
          Length = 640

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 156/443 (35%), Gaps = 40/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + +LW +SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 KYQEVRTPFMMNQELWEKSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G +   +   + P                           +    +       + 
Sbjct: 410 VYKTFGFQYE-VELSTRPEDS-----------------MGDDKLWEQAESALANVLHSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYADEVADKLAQAGVRVERDVRDEKLGYKIREAQMQKIPYVLVIGDKELENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
               E ++L+  ++       N 
Sbjct: 616 GEKSEVVALDVFVSSIEEEIKNR 638


>gi|253700848|ref|YP_003022037.1| threonyl-tRNA synthetase [Geobacter sp. M21]
 gi|259516486|sp|C6DYJ5|SYT_GEOSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|251775698|gb|ACT18279.1| threonyl-tRNA synthetase [Geobacter sp. M21]
          Length = 636

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 154/443 (34%), Gaps = 40/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  W P G      +    R+E  + G
Sbjct: 232 YLARIEEAKKRDHRKLGRELDLFS-FNDEVGAGLVIWHPKGAMLRTILEDFERKEHLKRG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   +LW  SG Y++Y + M      ++++    P +      I+RS ++SY
Sbjct: 291 YDIVLGPQILKTELWQRSGHYENYRENM-YFTTVDEQSYGVKPMNCLAHMMIYRSQLRSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  ++++    R E      G++R R F   DA+    TP+        +      +
Sbjct: 350 RDLPLRYFELGTVHRHERAGVLHGLLRVRGFTQDDAHILC-TPDQLDAEIKGVIQFVTEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G                   EF +   T   +   S D  +    +      D   
Sbjct: 409 MGIFG------------------FEFEMELSTRPEKSIGSDDAWELATSALLNALKDSGR 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   KL D+L    + +    +    F    ++      T+  
Sbjct: 451 PYEINEGDGAFYGPKIDI---KLRDALDRRWQCATIQCD----FTLPERFD----LTYVD 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+      +    +GA+     V+     G    W   V    +++            
Sbjct: 500 ADGEKKRPVMVHRVILGAIERFIGVLIEHFAGNFPTWLAPVQATIVTVT------DNQIP 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +  + +L   G  V  D   E++G +   A L   P  ++VG K V    +  + R  
Sbjct: 554 YAQAAFDKLRAAGIRVQKDFRNEKLGFKIREAQLQKIPYMLVVGDKEVESGMLAPRFRDG 613

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
              E M+ E+ I +  +   + +
Sbjct: 614 KNLESMTPEQFITFIENEVKSYK 636


>gi|251792477|ref|YP_003007203.1| threonyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
 gi|247533870|gb|ACS97116.1| threonyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
          Length = 643

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 140/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +  +  
Sbjct: 232 YLQRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G + +Y  +++      ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWQNY-GDLMFTTQSENREYAIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +            I
Sbjct: 349 RDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIRMVYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +I ++  + P                      + D  D               
Sbjct: 408 YSTFGFTNIFVKLSTRPEKR-----------------IGADDMWDCAEEGLANALKHNGL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    +     L D L    +     ++               +A++  
Sbjct: 451 EYEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTIQLDFALPGRL--------NASYVA 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G++     +I   + G    W        +++           +
Sbjct: 500 EDNDRRTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQAVVMNIT------DSQSE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +  +LS  G  V  D   E++G +     L   P  ++ G K +   KV ++ R  
Sbjct: 554 YVQDVAKKLSDAGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIETGKVAVRTRKG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                 ++EE ++    +  N 
Sbjct: 614 QDLGTFTVEEFLDVLKKQVRNR 635


>gi|139437031|ref|ZP_01771191.1| Hypothetical protein COLAER_00165 [Collinsella aerofaciens ATCC
           25986]
 gi|133776678|gb|EBA40498.1| Hypothetical protein COLAER_00165 [Collinsella aerofaciens ATCC
           25986]
          Length = 611

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 91/442 (20%), Positives = 156/442 (35%), Gaps = 44/442 (9%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           + +L+E   RD      ++ L   M+   + G   +LP G    + +    RE  ++ G 
Sbjct: 209 MHMLEEAKKRDHRKIGREMDLF--MMRDEAPGFPFFLPNGMILKNTLLDYWREIHHKAGY 266

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +E+S P + +  LW  SG +D Y   M      +D+     P +      ++ S   SYR
Sbjct: 267 VEISTPLIMNKQLWKTSGHWDHYKDNM-YSTVIDDEEYCIKPMNCPGGVLVYASKPHSYR 325

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    +I L  R ELR    G+ R R F   DA+ F    + +      +      ++
Sbjct: 326 ELPIRAGEIGLVHRHELRGALHGLFRVRCFNQDDAHLFVRPDQLTDEIV-GVVNLIDSVY 384

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
            + G K   +   + P     S E    A+ G                   T  + +   
Sbjct: 385 QKFGFKY-HVELSTRPEDSMGSDEDWARAEEG-----------------LRTALEQLHMD 426

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             + E   A Y    D H E   DSL    +     ++      F           +  A
Sbjct: 427 YEVNEGDGAFYGPKIDFHLE---DSLGRTWQCGTVQLDFQMPLNFD--------LEYVDA 475

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG       +     G++     ++     GK   W   V    + +       +  RD 
Sbjct: 476 DGTKKRPIMLHRVCFGSIERFIGILIEHFAGKFPTWLAPVQVKALPV------SEKSRDY 529

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++ A+L + G  V  DD  E+IG +   A  +   P  +I+G K V    + ++ R +
Sbjct: 530 AHEVCAKLEEAGIRVVCDDRDEKIGYKIREARSIDRVPYMLILGEKEVEAGNISVRDR-S 588

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS++E +          
Sbjct: 589 NETVQMSVDEFVAKVLEEIKTR 610


>gi|65319684|ref|ZP_00392643.1| COG0441: Threonyl-tRNA synthetase [Bacillus anthracis str. A2012]
          Length = 485

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 156/444 (35%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 80  EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 137

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 138 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 196

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 197 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 255

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G +   +   + P       E                   +    S       + 
Sbjct: 256 VYKTFGFEYE-VELSTRPEDSMGDDE-----------------LWEQAEASLENVLQSLN 297

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 298 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 346

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 347 DEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 401

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 402 QYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 461

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                 + L+  +       +N +
Sbjct: 462 EEKSGVIELDMFVESMKEEINNRK 485


>gi|229196601|ref|ZP_04323345.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228586957|gb|EEK45031.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
          Length = 639

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 154/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALANVLHSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 CKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              ++I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYADEIVDKLAQAGVRVERDVRDEKLGYKIREAQMQKIPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E + L   +       +N +
Sbjct: 616 EEKSEVVELNGFVESMKEEINNRK 639


>gi|222095974|ref|YP_002530031.1| threonyl-tRNA synthetase [Bacillus cereus Q1]
 gi|221240032|gb|ACM12742.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus cereus
           Q1]
          Length = 639

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 154/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALANVLHSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKIIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              ++I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYADEIADKLAQAGVRVERDVRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E + L   +       +N +
Sbjct: 616 EEKSEVVELNGFVESMKEEINNRK 639


>gi|157370384|ref|YP_001478373.1| threonyl-tRNA synthetase [Serratia proteamaculans 568]
 gi|166987325|sp|A8GDQ5|SYT_SERP5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157322148|gb|ABV41245.1| threonyl-tRNA synthetase [Serratia proteamaculans 568]
          Length = 642

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      + A +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N+       +
Sbjct: 349 RDLPLRMGEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVRAE-VNECIRMVYDV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P     + +    A+                         +   
Sbjct: 408 YGTFGFDKIAVKLSTRPEKRIGTDDMWTRAE-----------------EDLAAALTENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++       G        A++ G
Sbjct: 451 PFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFFLPGRLG--------ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G+M     ++   + G    W   V    +++           D
Sbjct: 500 ENNDRVVPVMIHRAILGSMERFIGILTEEYAGFYPTWIAPVQVVVMNIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVQQLTKKLQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + EV++       + 
Sbjct: 614 KDLGSLDVNEVVDKLLKEIRSR 635


>gi|325919878|ref|ZP_08181868.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           gardneri ATCC 19865]
 gi|325549662|gb|EGD20526.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           gardneri ATCC 19865]
          Length = 634

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 138/438 (31%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD      +  L    + + + G+  W P G      V   +R+    +G
Sbjct: 232 YILRMEEADKRDHRRIGKQQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIEAEVTAFHQQALAV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P                           D    +  +       
Sbjct: 408 YTAFGFDDIEIKIALRPEKR-----------------LGDDVTWDKAEAALRSALGVCGV 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L D++    ++    ++       G        A +  
Sbjct: 451 EWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 499

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               K H V +    +G+M     ++   H G    W   V     ++           D
Sbjct: 500 EHSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSWLAPVQVVVANIT------DAQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R  
Sbjct: 554 YVDSVRKTLANQGFRVNADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSG 613

Query: 424 GIREDMSLEEVINYASHR 441
                M++   +      
Sbjct: 614 EDLGTMTVSAFVERLQAE 631


>gi|262044121|ref|ZP_06017196.1| threonine-tRNA ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038520|gb|EEW39716.1| threonine-tRNA ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 622

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 139/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 212 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSKLKEYQ 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 270 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 328

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 329 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEDQVRDE-VNACIRMVYDM 387

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 388 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------TWDRAEADLAVALEENNI 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F    + S    A + G
Sbjct: 431 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPQRLS----AFYVG 479

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G++     ++     G    W   V    +++           +
Sbjct: 480 ENNERQVPVMIHRAILGSLERFIGILTEEFAGFFPTWIAPVQVVVMNIT------DSQAE 533

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 534 YVNELTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 593

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M   EVI        + 
Sbjct: 594 KDLGSMDENEVIEKLQQEIRSR 615


>gi|229091361|ref|ZP_04222576.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|228691990|gb|EEL45732.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-42]
          Length = 639

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 155/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    S       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEASLENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPTWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKIPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E + L   +       +N +
Sbjct: 616 EEKSEVVELNGFVESMKEEINNRK 639


>gi|58582810|ref|YP_201826.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427404|gb|AAW76441.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 671

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 138/438 (31%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 269 YILRMEEADKRDHRRIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 326

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 327 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 385

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 386 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIESEVTAFHQQALAV 444

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P                           D    +  +       
Sbjct: 445 YTAFGFDDIQIKIALRPEKR-----------------LGDDATWDKAEAALRSALGVCGV 487

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L D++    ++    ++       G        A +  
Sbjct: 488 EWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 536

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   V     ++           D
Sbjct: 537 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSWLAPVQVVVANIT------DAQAD 590

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R  
Sbjct: 591 YVDAVRKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSG 650

Query: 424 GIREDMSLEEVINYASHR 441
                M++   I      
Sbjct: 651 EDLGTMTVSAFIERLQAE 668


>gi|327461002|gb|EGF07335.1| threonine--tRNA ligase [Streptococcus sanguinis SK1057]
          Length = 647

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 152/445 (34%), Gaps = 32/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             KY     +   RD      +L L   MI  +  +G+  WLP G      +   I +++
Sbjct: 228 LKKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKE 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRS 120
             +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ 
Sbjct: 286 LASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKH 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SYR LP    +I +  R E       ++    +  +     +TPE  +  + +    
Sbjct: 346 HVHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R            +     D  E          +          D
Sbjct: 406 IIDVYADFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALD 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 453 EMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I   +         +     +    I   ++ 
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEA 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++ 
Sbjct: 558 HIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                   + ++E +       +N 
Sbjct: 618 YGQKETHTIPVDEFVEQILADIANK 642


>gi|224584156|ref|YP_002637954.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|254783535|sp|C0Q647|SYT_SALPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|224468683|gb|ACN46513.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 642

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDE-VNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSPFGFEKIVVKLSTRPDKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++            
Sbjct: 500 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSG 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + +VI        + 
Sbjct: 614 KDLGSLDVNDVIEKLQQEIRSR 635


>gi|331007295|ref|ZP_08330496.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC1989]
 gi|330418902|gb|EGG93367.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC1989]
          Length = 640

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 133/445 (29%), Gaps = 43/445 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L  L+E   RD      K       + + + G+  W P G      +   +R+ Q  
Sbjct: 230 KAHLHFLEEAVKRDHRKLGKKFDYF--HMQEEAPGMVFWHPKGWSIYATIEEYMRKVQRD 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG +D +   M  + +   +     P +      +F   +K
Sbjct: 288 NGYKEIKTPQVVDRSLWERSGHWDKFRDNMFTV-ESESRDYAIKPMNCPCHVQVFNQGLK 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY+ LP    +     R+E      G+MR R F+  DA+ F       +       + Y 
Sbjct: 347 SYKELPLRLAEFGSCHRNEASGTLQGLMRVRGFVQDDAHIFCSEEAIQEEVSVFTDLLYK 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                 G   + +R  + P     + E                   D    +     D  
Sbjct: 407 VYA-DFGFSDVIIRLSTRPEQRVGTEE-----------------GWDKAEKALADALDAK 448

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                 +    A Y    +     L D L    +     ++                A +
Sbjct: 449 GLPWEELPGEGAFYGPKIEF---SLRDCLNRVWQCGTIQVDFSMPGRLD--------AQY 497

Query: 303 KGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              DG      M    I     R +  +IE                      N       
Sbjct: 498 VAEDGSRQVPVMLHRAILGSFERFIGILIEHYEGAFPTWLAPEQVAILNITDN------- 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +K    L   G  V  D   E+IG +     L   P  +++G K V ++ + ++ 
Sbjct: 551 QSEYVQKTEKALRDKGFRVISDLRNEKIGFKIREHTLQRIPYLLVIGDKEVENNALAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       MS++  + + +    N 
Sbjct: 611 RTGEDLGVMSIDAFVAHLNADVENK 635


>gi|322833539|ref|YP_004213566.1| threonyl-tRNA synthetase [Rahnella sp. Y9602]
 gi|321168740|gb|ADW74439.1| threonyl-tRNA synthetase [Rahnella sp. Y9602]
          Length = 642

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 147/447 (32%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++   ++  L+E   RD      +L L    + + + G+  W   G      + A +R +
Sbjct: 227 KQLNAYIQRLEEAGKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW ++G +++Y + M       ++     P +      IF  
Sbjct: 285 LKSYDYQEVKGPFMMDRVLWEKTGHWENYKEAMFT-TSSENREYCIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +      N    
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIR 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G + I ++  + P     + E    A+                        
Sbjct: 403 MVYDMYSTFGFEKIVVKLSTRPEKRIGTDEMWTRAED-----------------DLAAAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +            A Y    +     L D L    +     ++    F    +    ++
Sbjct: 446 TENDIPFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGR----LN 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A++ G        V +    +G+M     ++   + G    W   V    +++       
Sbjct: 495 ASYIGESNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTWMAPVQVVIMNIT------ 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  E++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV +
Sbjct: 549 DSQATYVEELTKKLQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       M + EV++       + 
Sbjct: 609 RTRRGKDLGSMDVSEVVDKLLAEIRSR 635


>gi|313891921|ref|ZP_07825522.1| threonine--tRNA ligase [Dialister microaerophilus UPII 345-E]
 gi|329121028|ref|ZP_08249659.1| threonine--tRNA ligase [Dialister micraerophilus DSM 19965]
 gi|313119564|gb|EFR42755.1| threonine--tRNA ligase [Dialister microaerophilus UPII 345-E]
 gi|327471190|gb|EGF16644.1| threonine--tRNA ligase [Dialister micraerophilus DSM 19965]
          Length = 634

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 157/443 (35%), Gaps = 41/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +     +   RD      +L L +   H+   G   + P G    + +    RE   + G
Sbjct: 231 FLFVRSEAEKRDHRKLGKQLDLFS--FHEEGPGFPFFHPKGMVIRNLLIDYERELFRKYG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S +LW++SG +D Y + M      +++     P +       F++  +SY
Sbjct: 289 YEEIVTPIILSKNLWLQSGHWDHYRENM-YFTKIDNEDYAVKPMNCPGGILYFKTQQRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R EL     G+ R R F   DA+ F +TP+  +     +   +  +
Sbjct: 348 RDLPKRVGEFGLVHRHELHGALHGLFRVRNFTQDDAHIF-MTPKDMESEVISVVNMFKEL 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GLK       + P     S E                   +    +     +    
Sbjct: 407 YDVFGLKYHI-ELSTRPENSMGSDE-----------------LWEIATNALRNAIESTNV 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H E   DSL    +     +++                T+ G
Sbjct: 449 SYRINEGDGAFYGPKLDFHIE---DSLGRTWQCGTIQMDMQLP--------ERFDVTYVG 497

Query: 305 ADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +   G G++     ++   + G    W   V    I +       +   +
Sbjct: 498 EDGEKHRAVMIHRAGYGSLERFIGILIEHYAGAFPTWCAPVQVKIIPV------SENYHN 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++Y ++ + G  V  D   + +G +   A +   P  V+VG K  +   + ++ R  
Sbjct: 552 YAQEVYKKMFEQGIRVEIDKGNDTLGYKIRKAQMEKIPYMVVVGEKESNSGNISVRSREK 611

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
           G    + + + I    ++    +
Sbjct: 612 GDEGTVDINKFIELILNKMKERK 634


>gi|83594816|ref|YP_428568.1| threonyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
 gi|123753041|sp|Q2RNL4|SYT_RHORT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|83577730|gb|ABC24281.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 643

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 80/438 (18%), Positives = 151/438 (34%), Gaps = 41/438 (9%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      ++ L    + + ++G   W P G      +   +R   +  G
Sbjct: 232 YLTMLAEAEKRDHRRVGQEMDLF--HLQEEAQGAVFWHPKGWTVYRTLQNYMRRRLDLAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E++ P L    LW +SG ++ + + M  +++  DK +   P +      IF+  IKSY
Sbjct: 290 YVEVNTPMLVDRALWEKSGHWEKFRQNMF-ISEAEDKLLAMKPMNCPCHIQIFKQGIKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +          +
Sbjct: 349 RDLPLRMAEFGACHRNEASGALHGLMRVRAFVQDDAHIFCTEDQIVSET-QAFCDLLKSV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +  LG   I ++    P     S E                   D    +     D    
Sbjct: 408 YRDLGFTEIKVKFSDRPEVRAGSDE-----------------TWDKAEAALREATDAAGL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             ++     A Y    +     L D++  + +     ++       G        A + G
Sbjct: 451 EWTLNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVDFVLPERLG--------ADYVG 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG  H    +    +G       ++  +  G+   W   V     ++           D
Sbjct: 500 EDGDKHRPVMLHRAILGTFERFMGILIENCAGRFPFWLAPVQVVVATIT------SDADD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               + A L   G     D   E+I  +     L   P+ ++VG K      V ++    
Sbjct: 554 YARTVLAALKAKGLRAVADLRNEKINYKVREHSLAKVPVMLVVGRKEAETGGVALRRLGG 613

Query: 424 GIREDMSLEEVINYASHR 441
             +E ++L+E I   ++ 
Sbjct: 614 QSQEVLALDEAIATLANE 631


>gi|52143093|ref|YP_083736.1| threonyl-tRNA synthetase [Bacillus cereus E33L]
 gi|51976562|gb|AAU18112.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus cereus
           E33L]
          Length = 639

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 154/445 (34%), Gaps = 42/445 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    S       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEASLENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               +     +    +     R +A +IE                  + +  I   + V 
Sbjct: 501 DEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWIAP------VQVKVIPVSNAVH 554

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++  
Sbjct: 555 VQYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKY 614

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                + + L+  +       +N +
Sbjct: 615 GEEKSDVIELDMFVESIKEEINNRK 639


>gi|30262390|ref|NP_844767.1| threonyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47527681|ref|YP_019030.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49185231|ref|YP_028483.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|165870612|ref|ZP_02215266.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167633022|ref|ZP_02391348.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167639601|ref|ZP_02397871.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170686938|ref|ZP_02878157.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170706731|ref|ZP_02897190.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177649587|ref|ZP_02932589.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190565155|ref|ZP_03018075.1| threonyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227814802|ref|YP_002814811.1| threonyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|229603163|ref|YP_002866723.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254684964|ref|ZP_05148824.1| threonyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254722370|ref|ZP_05184158.1| threonyl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|254737411|ref|ZP_05195115.1| threonyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743403|ref|ZP_05201088.1| threonyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254751726|ref|ZP_05203763.1| threonyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254760245|ref|ZP_05212269.1| threonyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|30257021|gb|AAP26253.1| threonine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47502829|gb|AAT31505.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49179158|gb|AAT54534.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|164713767|gb|EDR19290.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167512310|gb|EDR87686.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167531834|gb|EDR94499.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170128462|gb|EDS97330.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170668989|gb|EDT19733.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172084661|gb|EDT69719.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190563182|gb|EDV17147.1| threonyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227004862|gb|ACP14605.1| threonine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|229267571|gb|ACQ49208.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 639

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 156/444 (35%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G +   +   + P       E                   +    S       + 
Sbjct: 410 VYKTFGFEYE-VELSTRPEDSMGDDE-----------------LWEQAEASLENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                 + L+  +       +N +
Sbjct: 616 EEKSGVIELDMFVESMKEEINNRK 639


>gi|329296183|ref|ZP_08253519.1| threonyl-tRNA synthetase [Plautia stali symbiont]
          Length = 642

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 136/442 (30%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKPLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRTKLKEYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKEVMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEDQVRDE-VNSCIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+    +                    +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEVDLAEAL-----------------KENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F         + AT+ G
Sbjct: 451 PFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLP----KRLDATYVG 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                     +    +G+M     ++     G    W   V    +++           +
Sbjct: 500 ETNDRQTPVMIHRAILGSMERFIGILTEEFAGFFPSWLAPVQAVVMNIT------DGQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVSELTKKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGEKEVEAGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M ++  +        + 
Sbjct: 614 KDLGSMDVDVFVEKLQQEIRSR 635


>gi|50913800|ref|YP_059772.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|68052904|sp|Q5XDC4|SYT_STRP6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|50902874|gb|AAT86589.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
          Length = 647

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 86/449 (19%), Positives = 164/449 (36%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F  TPE  +  + +    
Sbjct: 345 VRSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIFV-TPEQIQEEFQRALQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDF 239
            + ++    L     R                  D  +T  +  + +  +          
Sbjct: 404 IIDVYADFNLTDYRFRLS--------------YRDPNDTHKYYDNDEMWENAQSMLKAAL 449

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D++       E   A Y    D+   ++  +L   + +S   ++    F    ++     
Sbjct: 450 DEMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD---- 498

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             + GADG++H   M   G+ +       I             +          I   ++
Sbjct: 499 LKYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPHQV----TVIPISNE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 555 AHIDYAWEVAKTLRDRGVRADVDDRNEKMQYKIRTSQTSKIPYQLIVGDKEMEDKSVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +      S+EE +          +RP
Sbjct: 615 RYGSKATHTESVEEFVENILADIARKSRP 643


>gi|206974097|ref|ZP_03235015.1| threonyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217959885|ref|YP_002338441.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|229139078|ref|ZP_04267655.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|206748253|gb|EDZ59642.1| threonyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217066290|gb|ACJ80540.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|228644433|gb|EEL00688.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
          Length = 639

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 154/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALANVLHSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 CKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYADEVADKLAQAGVRVERDVRDEKLGYKIREAQMQKIPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E + L   +       +N +
Sbjct: 616 EEKSEVVELNGFVESMKEEINNRK 639


>gi|260556061|ref|ZP_05828280.1| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
 gi|260410116|gb|EEX03415.1| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
          Length = 640

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 142/441 (32%), Gaps = 38/441 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG   +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQIVDFTLWEKSGHAANYAENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  K          L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTKEQIGKE-VADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P                           D    S     D    
Sbjct: 407 YKDFGFEEVQMKLSTRPEKR-----------------VGDDALWDLAEKSLADALDAAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +      +    F    +           
Sbjct: 450 EWELQPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQCD----FNLPVRLDASY---VTE 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +D  V +    +G+      ++    +      P  ++P +  ++NI        +A
Sbjct: 500 ENERDQPVMLHRAILGSFERFIGILI---EHYAGFMPPWLSPVQACVMNITDS---QAEA 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R   
Sbjct: 554 SEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGK 613

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS++  I+      +  
Sbjct: 614 NLGTMSVDAFIDLVKSAVAER 634


>gi|261418266|ref|YP_003251948.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|319767774|ref|YP_004133275.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC52]
 gi|261374723|gb|ACX77466.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|317112640|gb|ADU95132.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC52]
          Length = 652

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 167/442 (37%), Gaps = 32/442 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T    Q  +G+  WLP G      +   I +++   G
Sbjct: 234 YLRLLEEAKERDHRKLGKELELFTT-SQQVGQGLPLWLPKGATIRRIIERYIVDKEVALG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S +L+  SG +D Y + M    + +++ ++  P +      I++S + SY
Sbjct: 293 YDHVYTPVLGSVELYKTSGHWDHYKENMFPPMEMDNEELVLRPMNCPHHMMIYKSKLHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++    R E+     G+ R R   + DA+ F    +     + ++    L +
Sbjct: 353 RELPIRIAELGTMHRYEMSGALTGLQRVRGMTLNDAHIFVRPDQIKDE-FKRVVNLILEV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G++    R                       + +   +  +          D++  
Sbjct: 412 YKDFGIEEYSFRLSYRDPHDKE-------------KYYDDDEMWEKAQRMLREAMDELGL 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+ G
Sbjct: 459 DYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFD----LTYIG 507

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGK H   +     G +  +   +    +     +P  +AP ++ +I +    +   D 
Sbjct: 508 EDGKPHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVKVIPVSP--EAHLDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +   L + G  V  D+  E+IG +   A +   P  ++VG K VS+  V ++     
Sbjct: 564 AYDVQRTLKERGFRVEVDERDEKIGYKIREAQMQKIPYMLVVGDKEVSERAVNVRRYGEK 623

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               M L+E +   +      R
Sbjct: 624 ESRTMGLDEFMALLADDVREKR 645


>gi|291327048|ref|ZP_06126787.2| threonine--tRNA ligase [Providencia rettgeri DSM 1131]
 gi|291311980|gb|EFE52433.1| threonine--tRNA ligase [Providencia rettgeri DSM 1131]
          Length = 653

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 142/443 (32%), Gaps = 40/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 243 YLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRTKLKAYN 300

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 301 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCVKPMNCPGHVQIFNQGLKSY 359

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +               +
Sbjct: 360 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQILSE-VTSCIEMIYDV 418

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + E                   D               
Sbjct: 419 YATFGFEKIVVKLSTRPEKRIGTDE-----------------MWDRAEEDLANALKSKGI 461

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F+   + +    A++ G
Sbjct: 462 EFEYQPGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FFLPGRLT----ASYVG 510

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G++     ++   + G    W        +++           D
Sbjct: 511 ENNERIVPVMIHRAVLGSLERFIGILTEEYAGFFPTWLAPQQVVVMNIT------DSQAD 564

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++ ++L  VG     D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 565 YVQELVSKLQSVGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRG 624

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                + + E +        + +
Sbjct: 625 KDLGSLDVNEFMTKLLEEIRSRQ 647


>gi|213156053|ref|YP_002318098.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|301346223|ref|ZP_07226964.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB056]
 gi|301596041|ref|ZP_07241049.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB059]
 gi|226701414|sp|B7I688|SYT_ACIB5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|213055213|gb|ACJ40115.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB0057]
          Length = 640

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 142/441 (32%), Gaps = 38/441 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG   +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQIVDFTLWEKSGHAANYVENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  K          L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTKEQIGKE-VADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P                           D    S     D    
Sbjct: 407 YKDFGFEEVQMKLSTRPEKR-----------------VGDDALWDLAEKSLADALDAAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +      +    F    +           
Sbjct: 450 EWELQPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQCD----FNLPVRLDASY---VTE 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +D  V +    +G+      ++    +      P  ++P +  ++NI        +A
Sbjct: 500 ENERDQPVMLHRAILGSFERFIGILI---EHYAGFMPPWLSPVQACVMNITDS---QAEA 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R   
Sbjct: 554 SEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGK 613

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS++  I+      +  
Sbjct: 614 NLGTMSVDAFIDLVKSAVAER 634


>gi|169797157|ref|YP_001714950.1| threonyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|184156915|ref|YP_001845254.1| threonyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|215484620|ref|YP_002326855.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|239500701|ref|ZP_04660011.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB900]
 gi|301510743|ref|ZP_07235980.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB058]
 gi|332856896|ref|ZP_08436305.1| threonine--tRNA ligase [Acinetobacter baumannii 6013150]
 gi|332867201|ref|ZP_08437466.1| threonine--tRNA ligase [Acinetobacter baumannii 6013113]
 gi|332874008|ref|ZP_08441943.1| threonine--tRNA ligase [Acinetobacter baumannii 6014059]
 gi|226701398|sp|B7H005|SYT_ACIB3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238685492|sp|A3M299|SYT_ACIBT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238688031|sp|B0V5P2|SYT_ACIBY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690968|sp|B2HTH0|SYT_ACIBC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169150084|emb|CAM87978.1| threonyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|183208509|gb|ACC55907.1| Threonyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|193076379|gb|ABO11043.2| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
 gi|213985706|gb|ACJ56005.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|322506811|gb|ADX02265.1| thrS [Acinetobacter baumannii 1656-2]
 gi|323516680|gb|ADX91061.1| threonyl-tRNA synthetase [Acinetobacter baumannii TCDC-AB0715]
 gi|332726950|gb|EGJ58455.1| threonine--tRNA ligase [Acinetobacter baumannii 6013150]
 gi|332734140|gb|EGJ65272.1| threonine--tRNA ligase [Acinetobacter baumannii 6013113]
 gi|332737749|gb|EGJ68641.1| threonine--tRNA ligase [Acinetobacter baumannii 6014059]
          Length = 640

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 142/441 (32%), Gaps = 38/441 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG   +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQIVDFTLWEKSGHAANYAENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  K          L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTKEQIGKE-VADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P                           D    S     D    
Sbjct: 407 YKDFGFEEVQMKLSTRPEKR-----------------VGDDALWDLAEKSLADALDAAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +      +    F    +           
Sbjct: 450 EWELQPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQCD----FNLPVRLDASY---VTE 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +D  V +    +G+      ++    +      P  ++P +  ++NI        +A
Sbjct: 500 ENERDQPVMLHRAILGSFERFIGILI---EHYAGFMPPWLSPVQACVMNITDS---QAEA 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R   
Sbjct: 554 SEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGK 613

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS++  I+      +  
Sbjct: 614 NLGTMSVDAFIDLVKSAVAER 634


>gi|322385772|ref|ZP_08059416.1| threonine--tRNA ligase [Streptococcus cristatus ATCC 51100]
 gi|321270510|gb|EFX53426.1| threonine--tRNA ligase [Streptococcus cristatus ATCC 51100]
          Length = 649

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 158/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +++ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S++E +       +N 
Sbjct: 619 GQKETQTVSVDEFVEAILADIANK 642


>gi|196033851|ref|ZP_03101262.1| threonyl-tRNA synthetase [Bacillus cereus W]
 gi|228945992|ref|ZP_04108333.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|195993531|gb|EDX57488.1| threonyl-tRNA synthetase [Bacillus cereus W]
 gi|228813685|gb|EEM59965.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 639

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 155/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    S       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEASLENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  +L++ G  V  D   E++G +   A +   P  V++G K + +  V ++   
Sbjct: 556 QYADEVADKLTQAGVRVERDMRDEKLGYKIREAQMQKVPYVVVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                 + L+  +       +N +
Sbjct: 616 EEKSGVIELDMFVESMKEEINNRK 639


>gi|163795474|ref|ZP_02189441.1| Threonyl-tRNA synthetase [alpha proteobacterium BAL199]
 gi|159179460|gb|EDP63991.1| Threonyl-tRNA synthetase [alpha proteobacterium BAL199]
          Length = 640

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 147/438 (33%), Gaps = 40/438 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I + + G   W P G      +   IR      G
Sbjct: 232 YLHMLEEAEKRDHRRLGRELDLF--HIQEEAVGSVFWHPKGWTLYRVIENYIRGRLEEGG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG +D + + M      +DK +   P +      +++  +KSY
Sbjct: 290 YREIKTPQLIDRALWEASGHWDKFREAMFTANAEDDKVLALKPMNCPGHVQVYKQGLKSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    + +  S  +       +
Sbjct: 350 RDLPLRLAEFGSCHRNEPSGALHGIMRVRAFTQDDAHIFCTEDQITSESI-RFCDLLKSV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++    P                           D    +  +  D    
Sbjct: 409 YRDFGFEDIRIKFSDRPEVR-----------------AGEDAVWDRAEGALRSACDAAGL 451

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             ++     A Y    +     L D++  + +     ++    F    +    + A +  
Sbjct: 452 DTTLNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVD----FVLPER----LDANYVA 500

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G+      +     G+M     ++   + G+  +W   +     ++ N          
Sbjct: 501 ESGERKRPVMLHRAIFGSMERWIGILIEQYSGRFPMWLSPLQVVVATITN------DADG 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++ A     G  V  D   E+I  +         P  ++VG++      V ++    
Sbjct: 555 YAEEVAAACKAAGLRVAMDRRNEKINYKIREHSEAKVPAILVVGAREAEGRSVAVRRLGG 614

Query: 424 GIREDMSLEEVINYASHR 441
             +E ++L++ ++     
Sbjct: 615 QAQEVLALDDAVHRLKTE 632


>gi|331266854|ref|YP_004326484.1| threonyl-tRNA synthetase [Streptococcus oralis Uo5]
 gi|326683526|emb|CBZ01144.1| threonyl-tRNA synthetase [Streptococcus oralis Uo5]
          Length = 647

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 157/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLNEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + + ++E +       +N 
Sbjct: 619 GQKETQTVPVDEFVAAILADIANK 642


>gi|322388243|ref|ZP_08061847.1| threonine--tRNA ligase [Streptococcus infantis ATCC 700779]
 gi|321140915|gb|EFX36416.1| threonine--tRNA ligase [Streptococcus infantis ATCC 700779]
          Length = 647

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 157/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLNEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  +S++E +       +N 
Sbjct: 619 GQKETNTVSVDEFVATILADIANK 642


>gi|56421254|ref|YP_148572.1| threonyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|297529120|ref|YP_003670395.1| threonyl-tRNA synthetase [Geobacillus sp. C56-T3]
 gi|73919792|sp|Q5KWD2|SYT_GEOKA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56381096|dbj|BAD77004.1| threonyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|297252372|gb|ADI25818.1| threonyl-tRNA synthetase [Geobacillus sp. C56-T3]
          Length = 652

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 167/442 (37%), Gaps = 32/442 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T    Q  +G+  WLP G      +   I +++   G
Sbjct: 234 YLRLLEEAKERDHRKLGKELELFTT-SQQVGQGLPLWLPKGATIRRIIERYIVDKEVALG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S +L+  SG +D Y + M    + +++ ++  P +      I++S + SY
Sbjct: 293 YDHVYTPVLGSVELYKTSGHWDHYKENMFPPMEMDNEELVLRPMNCPHHMMIYKSKLHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++    R E+     G+ R R   + DA+ F    +     + ++    L +
Sbjct: 353 RELPIRIAELGTMHRYEMSGALTGLQRVRGMTLNDAHIFVRPDQIKDE-FKRVVNLILEV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G++    R                       + +   +  +          D++  
Sbjct: 412 YKDFGIEEYSFRLSYRDPHDKE-------------KYYDDDEMWEKAQRMLREAMDELGL 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+ G
Sbjct: 459 DYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFD----LTYIG 507

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGK H   +     G +  +   +    +     +P  +AP ++ +I +    +   D 
Sbjct: 508 EDGKPHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVKVIPVSP--EAHLDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +   L + G  V  D+  E+IG +   A +   P  ++VG K VS+  V ++     
Sbjct: 564 AYDVQRTLKERGFRVEVDERDEKIGYKIREAQMQKIPYMLVVGDKEVSERAVNVRRYGEK 623

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               M L+E +   +      R
Sbjct: 624 ESRTMGLDEFMALLADDVREKR 645


>gi|319790149|ref|YP_004151782.1| threonyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
 gi|317114651|gb|ADU97141.1| threonyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
          Length = 658

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 78/463 (16%), Positives = 157/463 (33%), Gaps = 61/463 (13%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL  L+E   RD  +   +L L      +   G+  W P G      +   + EE  + G
Sbjct: 232 FLHRLEEAKKRDHRVLGKQLDLFGIY-EEAGPGLVFWHPNGAIIRQEIEQWVEEEHRKRG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEM-------LRLADRNDKA--------------M 104
              +  P +  ADLW  SG Y+ Y + M           +R                   
Sbjct: 291 YQRIYTPHIMKADLWKRSGHYNFYRENMFFVPVVEHDEEERLGNDEVPLTCSEIEKAHWY 350

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSF 163
              P +      I++S ++SYR+LP  F++    +R E      G++R R F   D + F
Sbjct: 351 AVKPMNCPGHILIYKSQVRSYRDLPIRFFEFGTVYRYEKSGSLHGLLRVRGFTQDDGHIF 410

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
               +  +                  +  I     +  +      ++++   T   +   
Sbjct: 411 CRPDQLKEEIQGV-------------MDYIMDLLSTFKL------DYVINVGTRPEKFIG 451

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +++  +    +      +     +IVE   A Y    D+    + D++          ++
Sbjct: 452 TEEAWEHATNALIEALKERGFEYNIVEGDGAFYGPKIDI---AVLDAIGRKWDGPTIQVD 508

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
               F    ++      T+   DG+      +    +G++     ++   + G    W  
Sbjct: 509 ----FNLPERFD----LTYVDRDGQKKRPVMVHRAIMGSIERFIGLLIEHYAGLFPTW-- 558

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
                      I        D  +++YA+L + G  V  DD   ++G +   A+    P 
Sbjct: 559 ----LAPVQAVIIPVSDKYLDYADEVYAKLKEAGIRVKLDDESAKVGYKIRKAETQKIPY 614

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +IVG +   +  V ++ +  G   +M L++ ++         
Sbjct: 615 MLIVGEREKENQTVSVRSKREGDLGEMELQQFLDKILTEIKEK 657


>gi|145298933|ref|YP_001141774.1| threonyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166223317|sp|A4SMA4|SYT_AERS4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|142851705|gb|ABO90026.1| threonyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 642

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 151/447 (33%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD      +L L    + + + G+  W   G      +   IR +
Sbjct: 227 KQLKGYLQRLEEASKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFIRGK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW  SG ++ Y + M       ++     P +      IF  
Sbjct: 285 LKEYDYQEVKGPFMMDRVLWERSGHWEKYAQAMFT-TQSENREYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +  +     + +
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIMEEVSACIRM 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            Y       G ++I ++  + P     S E                   D    +     
Sbjct: 404 VYDVYGT-FGFENIVVKLSTRPEQRIGSDE-----------------AWDRAEAALAEAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   +     A Y    +     L D L    +     ++       G        
Sbjct: 446 VLNGLKYDLQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFALPGRLG-------- 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+ G D + H  V +    +G++     ++    +    ++P  +AP +  ++NI  + 
Sbjct: 495 ATYVGEDNERHVPVMIHRAILGSLERFIGILT---EEYAGLFPTWLAPTQAVVMNITDN- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   K+   L+  G     D   E+IG +     L   P  ++ G K V   K+ +
Sbjct: 551 --QADYAVKVAKALNDAGLRAKADLRNEKIGFKIREHTLKRVPFMLVCGDKEVEAGKIAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R         +EE++   +      
Sbjct: 609 RTRKGADLGTYPVEELVALLTQEVQTR 635


>gi|229150586|ref|ZP_04278801.1| Threonyl-tRNA synthetase [Bacillus cereus m1550]
 gi|228632895|gb|EEK89509.1| Threonyl-tRNA synthetase [Bacillus cereus m1550]
          Length = 640

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 155/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TP+  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPKQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             + +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYANEIAHKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E ++L+  +        N +
Sbjct: 616 EEKSEVIALDVFVASIEEEIKNRK 639


>gi|317129892|ref|YP_004096174.1| threonyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315474840|gb|ADU31443.1| threonyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 645

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 171/441 (38%), Gaps = 33/441 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L + T +  +  +G+  WLP G      +   I + + R G 
Sbjct: 235 LKMLEEAKERDHRKLGKELGIFT-INQKVGQGLPLWLPKGATIRRTIERYIVDLEERLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG +D Y ++M    + +++ ++  P +      I+++ + SYR
Sbjct: 294 DHVYTPVLGSVELYKTSGHWDHYHEDMFPTMEMDNEDLVLRPMNCPHHMMIYKNQLHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           NLP    ++    R E+     G+ R R   + DA+ F    +     + ++      ++
Sbjct: 354 NLPVRIAELGTMHRHEMSGALAGLQRVRAMTLNDAHIFCRPDQLKDE-FIRVVELVQNVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G+     R                       +   + +  +          +D+   
Sbjct: 413 QDFGIDDYYFRLSYRDPEDKE-------------KYVDNDEMWEKAQAMLKEAMEDMNVD 459

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  +L +++ +S   ++    F+   ++       + G 
Sbjct: 460 YVEAEGEAAFYGPKLDV---QVKTALGKDETLSTVQLD----FHLPNRF----ELAYVGE 508

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DGK+H   +     G +  +   +    +     +P  +AP ++ +I +    +V  D  
Sbjct: 509 DGKEHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVEVIPV---SEVHMDYV 563

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++  +L + G  V  D   E++G +   A +   P  +++G K +  S V ++      
Sbjct: 564 RRVEDKLKQAGVRVHVDVRDEKLGYKIREAQMQKIPYILVLGDKEIEASTVNVRKYGQKD 623

Query: 426 REDMSLEEVINYASHRFSNNR 446
            E + L+E ++       N +
Sbjct: 624 SEAVGLDEFVSSMKEEIQNRK 644


>gi|325982725|ref|YP_004295127.1| threonyl-tRNA synthetase [Nitrosomonas sp. AL212]
 gi|325532244|gb|ADZ26965.1| threonyl-tRNA synthetase [Nitrosomonas sp. AL212]
          Length = 635

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 155/442 (35%), Gaps = 41/442 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      +L L    +   + G+  W P G      +   +R   + 
Sbjct: 229 KNYLHRLEEAEKRDHRKIGKQLNLF--HMQDEASGMVFWHPKGWTLWQQIEQYMRNILSH 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +   DLWV SG ++++ + M  +   +++     P +      IF   ++
Sbjct: 287 NGYHEIRTPQILDKDLWVRSGHWENFRENMF-ITHSDERDFAIKPMNCPGHVQIFNQGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  F +     R+E      G+MR R F   DA+ F    +  +           
Sbjct: 346 SYRELPIRFAEFGSCHRNEASGALHGIMRVRAFTQDDAHIFCTEDQIQQEVVEF-IDLLK 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G + I ++  + P+                     S+   D    +     +++
Sbjct: 405 IVYADFGFREILIKLSTRPLKR-----------------VGSEAQWDKSEAALEAALNEV 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    +     L D +    +     ++       G        A +
Sbjct: 448 KLEWERQPGEGAFYGPKIEF---SLKDCIGRLWQCGTLQLDFSMPDRLG--------AEY 496

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D      V +    +G++     ++  ++ G   +W        +++       +  
Sbjct: 497 VAEDNSRQVPVMLHRAILGSLERFIGILIENYAGALPLWLSPEQVVVLNI------SRTQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +K+ A+L + G     D   E+I  +     L   P Q+IVG + V  +K+ +++R
Sbjct: 551 IDYAQKVVAQLKENGVRASLDLRNEKITYKIREHSLQKLPYQIIVGDEEVRANKIAVRNR 610

Query: 422 LTGIREDMSLEEVINYASHRFS 443
           +      M L + +   +   S
Sbjct: 611 VGENLGQMKLPDFLVRFNEELS 632


>gi|227111545|ref|ZP_03825201.1| threonyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 642

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 146/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   + + + RD      +L L    + + + G+  W   G      + A +R +  
Sbjct: 229 LASYLQRLEEASKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    +W ++G +++Y + M       ++     P +      IF   +
Sbjct: 287 SYQYQEVKGPFMMDRVMWEKTGHWENYKEAMFT-TSSENREYCIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +      N      
Sbjct: 346 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G + I ++  + P     S E                   D           +
Sbjct: 405 YDMYSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAAALTE 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +      A Y    +     L D L    +     ++    F    +    ++A+
Sbjct: 448 NNIEFAYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGR----LNAS 496

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G   +    V +    +G+M     ++     G    W   V    I++         
Sbjct: 497 YVGESNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQAVIINIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L + G  V  D   E+IG +     L   P  ++ G K V   KV ++ 
Sbjct: 551 QSDYVNELTRKLQEAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       M + EVI+       + 
Sbjct: 611 RRGKDLGSMDVSEVISKLQQEIRSR 635


>gi|253688275|ref|YP_003017465.1| threonyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259516611|sp|C6DFY6|SYT_PECCP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|251754853|gb|ACT12929.1| threonyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 642

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 144/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   + +   RD      +L L    + + + G+  W   G      + A +R +  
Sbjct: 229 LASYLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    +W ++G +++Y + M       ++     P +      IF   +
Sbjct: 287 SYQYQEVKGPFMMDRVMWEKTGHWENYKEAMFT-TSSENREYCIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +      N      
Sbjct: 346 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G + I ++  + P     S E                   D           +
Sbjct: 405 YDMYSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAAALTE 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y    +     L D L    +     ++    F    +    ++A+
Sbjct: 448 NNIEFDYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGR----LNAS 496

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G   +    V +    +G+M     ++     G    W   V    +++         
Sbjct: 497 YVGESNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DT 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L + G  V  D   E+IG +     L   P  ++ G K V   KV ++ 
Sbjct: 551 QSDYVNELTRKLQEAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       + + EVI+       + 
Sbjct: 611 RRGKDLGSLDVSEVISKLQQEIRSR 635


>gi|307709563|ref|ZP_07646017.1| threonyl-tRNA synthetase [Streptococcus mitis SK564]
 gi|307619694|gb|EFN98816.1| threonyl-tRNA synthetase [Streptococcus mitis SK564]
          Length = 647

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 158/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S+++ +       +N 
Sbjct: 619 GQKETQTVSVDDFVQAILADIANK 642


>gi|167035206|ref|YP_001670437.1| prolyl-tRNA synthetase [Pseudomonas putida GB-1]
 gi|189083507|sp|B0KTK4|SYP_PSEPG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166861694|gb|ABZ00102.1| prolyl-tRNA synthetase [Pseudomonas putida GB-1]
          Length = 571

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 121/270 (44%), Positives = 172/270 (63%), Gaps = 10/270 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHQRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNMYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F RLGL   P++A++G IGG  SHEF VLA++GE  V  S    D+    E  +  
Sbjct: 181 YSNVFTRLGLDFRPVQADTGSIGGSYSHEFHVLAESGEDDVIFSDS-SDYAANIEKAEA- 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                   + + T   A T ++      D+
Sbjct: 239 --------IPRETVRPAPTEELRLVDTPDA 260



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 77/207 (37%), Positives = 114/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  +
Sbjct: 364 DDKHYFGVNWERDLPVPQVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEAL 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVVLSMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            V R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + ++D  +
Sbjct: 484 DVVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLADGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E KHR     + + L EV+ +   R  
Sbjct: 544 EYKHRTEQDAQALPLNEVLTFLQARVR 570


>gi|289167501|ref|YP_003445770.1| Threonyl-tRNA synthetase, threonine-tRNA ligase [Streptococcus
           mitis B6]
 gi|288907068|emb|CBJ21902.1| Threonyl-tRNA synthetase, threonine-tRNA ligase [Streptococcus
           mitis B6]
          Length = 647

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 158/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S+++ +       +N 
Sbjct: 619 GQKETQTVSVDDFVQAILADIANK 642


>gi|297538938|ref|YP_003674707.1| threonyl-tRNA synthetase [Methylotenera sp. 301]
 gi|297258285|gb|ADI30130.1| threonyl-tRNA synthetase [Methylotenera sp. 301]
          Length = 635

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 139/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L      +   + G+  W P G      V   +R+      
Sbjct: 231 YLFQLEEAEKRDHRKLGKQLDYF--HMQDDAPGMVFWHPRGWSIWQEVEQYMRKMFRDYN 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  PT+    LW +SG + +Y + M  +     +     P +      IF S + SY
Sbjct: 289 YQEVRTPTIMDRTLWEKSGHWQNYREGMF-VTSSESRDYAVKPMNCPGHVQIFNSSLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +           + 
Sbjct: 348 RDLPLRLAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEEQVEAEVADFIKMLYKA 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++  + P                      +    D    S          
Sbjct: 407 YGDFGFNDVLVKLSTRPEKR-----------------IGTDADWDKAETSLANALKLNNL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L DSL    +     ++       G        A +  
Sbjct: 450 DFEYQPGEGAFYGPKIEF---TLKDSLGRLWQCGTIQLDPNLPERLG--------AEYVA 498

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  + H V +    +G+M     ++    +      P  +AP ++ ++NI    +   D
Sbjct: 499 EDNSRKHPVMLHRAIVGSMERFIGILI---ENYAGAMPLWLAPVQVMVLNI---SENQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L K G    +D   E+I  +     +   P  ++ G + +    V ++ R  
Sbjct: 553 YVRQVVEMLKKNGIRCEFDLRNEKITYKIREHSMQKMPYLLVAGEREMQTGHVAVRTRKG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M +E +I          
Sbjct: 613 EDLGSMPIEALIERLKAEIETK 634


>gi|257092825|ref|YP_003166466.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257045349|gb|ACV34537.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 638

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 146/442 (33%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    +   + G+  W   G      V   +R      G
Sbjct: 231 YLHLLEEAEKRDHRKLGRQLDLF--HLQDEAPGMVFWHAKGWTIWQEVEQYMRRLLGENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG + +Y + M       ++     P +      IF   ++SY
Sbjct: 289 YCEVKTPMIMDRTLWERSGHWQNYAEHMFT-TASENRDYAIKPMNCPGHIQIFNQGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    +         +I
Sbjct: 348 RDLPLRLAEFGSCHRNEPSGALHGIMRVRAFVQDDAHIFCTEAQVLPET-AAFIDLLEKI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P                      S    D    +          
Sbjct: 407 YADFGFTDILVKLSTRPDKR-----------------IGSDAVWDRAEAALAEALAAKGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++    F    +    + A + G
Sbjct: 450 AYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLD----FALPER----LDAHYVG 498

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D   H  V +    +G++     ++   + G   +W           + +    +   D
Sbjct: 499 EDNDRHVPVMLHRAILGSLERFIGILIEHYAGAMPLW------LSPMQVVVLNISEKQGD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++ A L + G     D   E+I  +     L   P QV+VG K V+ + V ++ R  
Sbjct: 553 YAEQVAATLRRAGLRAEADLRNEKITRKIREHSLNKLPYQVVVGDKEVAANLVAVRTRGG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MSLE +I       ++ 
Sbjct: 613 QDLGQMSLESLIRQLLEEVASR 634


>gi|251798759|ref|YP_003013490.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247546385|gb|ACT03404.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 645

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 165/441 (37%), Gaps = 35/441 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +L + T    +  +G+  WLP G K    +   I + + R G 
Sbjct: 235 LHFLEEAKKRDHRKLGKELKMFT-FSREVGQGLPLWLPNGAKVRRTLERYIVDLEERLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + +L+  SG ++ Y ++M  +   +++ ++  P +      +++S ++SYR
Sbjct: 294 EHVYTPVLANVELYKISGHWEHYSEDMFPVMALDNEELVLRPMNCPHHMMVYKSDMRSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++    R E+     G+ R R   + DA+ F   P+  K  + ++     +++
Sbjct: 354 DLPVRIAEMGTMHRYEMSGALTGLHRVRAMTLNDAHIFCR-PDQIKEEFARVVNLIRKVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS-KDFMDFPIPSENTDFDDIIS 244
              G+K    R                  D  +T+ +    +  +          +++  
Sbjct: 413 EDFGIKEYRFRLS--------------YRDPQDTEKYFQNDEMWEMSQRMLREVVEELGL 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  +L + + +S   ++    F    ++       + G
Sbjct: 459 PFFEAEGEAAFYGPKLDV---QIKTALGKEETLSTAQLD----FLLPDRF----ELEYIG 507

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGK H   +     G +  +  +     +      P  ++P +  +I +          
Sbjct: 508 EDGKKHRPVVIHR--GIISTMERMTAFLLENFAGALPLWLSPVQAKVIPVST---AYEAY 562

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L   G  V  D   E++G +   A L   P  ++VG        V ++ R  G
Sbjct: 563 AREVEEKLQLAGIRVESDLRNEKLGYKIREAQLEKLPYMLVVGENEAQSGSVSVRKRGEG 622

Query: 425 IREDMSLEEVINYASHRFSNN 445
                 + E++    +  +  
Sbjct: 623 DIGAKPVAELVELLQNEIATK 643


>gi|324991486|gb|EGC23419.1| threonine--tRNA ligase [Streptococcus sanguinis SK353]
          Length = 647

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 152/445 (34%), Gaps = 32/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             KY     +   RD      +L L   MI  +  +G+  WLP G      +   I +++
Sbjct: 228 LKKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKE 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRS 120
             +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ 
Sbjct: 286 LASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKH 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SYR LP    +I +  R E       ++    +  +     +TPE  +  + +    
Sbjct: 346 HVHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R            +     D  E          +          D
Sbjct: 406 IIDVYADFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALD 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 453 EMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I   +         +     +    I   ++ 
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEA 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++ 
Sbjct: 558 HIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                   + ++E +       ++ 
Sbjct: 618 YGQKETHTIPVDEFVEQILADIASK 642


>gi|15674621|ref|NP_268795.1| threonyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71910240|ref|YP_281790.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|22654136|sp|Q9A115|SYT_STRP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|13621733|gb|AAK33516.1| putative threonyl-tRNA synthetase 1 [Streptococcus pyogenes M1 GAS]
 gi|71853022|gb|AAZ51045.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
          Length = 647

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 86/449 (19%), Positives = 164/449 (36%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F  TPE  +  + +    
Sbjct: 345 VRSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIFV-TPEQIQEEFQRALQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDF 239
            + ++    L     R                  D  +T  +  + +  +          
Sbjct: 404 IIDVYADFNLTDYRFRLS--------------YRDPNDTHKYYDNDEMWENAQSMLKAAL 449

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D++       E   A Y    D+   ++  +L   + +S   ++    F    ++     
Sbjct: 450 DEMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD---- 498

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             + GADG++H   M   G+ +       I             +          I   ++
Sbjct: 499 LKYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPHQV----TVIPISNE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 555 AHIDYAWEVAKTLRDRGVRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +      S+EE +          +RP
Sbjct: 615 RYGSKTTHTESVEEFVENILADIARKSRP 643


>gi|270293200|ref|ZP_06199411.1| threonine--tRNA ligase [Streptococcus sp. M143]
 gi|270279179|gb|EFA25025.1| threonine--tRNA ligase [Streptococcus sp. M143]
          Length = 647

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 156/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEI 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + ++E ++      +N 
Sbjct: 619 GQKETNTVPVDEFVSAILADIANK 642


>gi|222152709|ref|YP_002561885.1| threonyl-tRNA synthetase [Streptococcus uberis 0140J]
 gi|254783540|sp|B9DU13|SYT_STRU0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|222113521|emb|CAR41303.1| threonyl-tRNA synthetase [Streptococcus uberis 0140J]
          Length = 648

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 80/449 (17%), Positives = 160/449 (35%), Gaps = 36/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      ++++H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    ++ +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDFD 240
           + ++    L     R                  D  +T+ +  + +  +          D
Sbjct: 407 IDVYEDFNLTDYRFRLS--------------YRDPKDTEKYYDNDEMWENAQSMLKAALD 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 453 EMGVEYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I             +          I   ++ 
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPHQV----TVIPISNEA 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++ 
Sbjct: 558 HIDYAWEVAKALRDRGIRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRF-SNNRPV 448
             +      SL E ++         +RPV
Sbjct: 618 YGSKATHTESLSEFMDTILADIARKSRPV 646


>gi|227327045|ref|ZP_03831069.1| threonyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 642

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 145/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + + + RD      +L L    + + + G+  W   G      + A +R +     
Sbjct: 232 YLQRLEEASKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLKSYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    +W ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVMWEKTGHWENYKEAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D           +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAAALTENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +      A Y    +     L D L    +     ++    F    +    ++A++ G
Sbjct: 451 EFAYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGR----LNASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              +    V +    +G+M     ++     G    W   V    I++           D
Sbjct: 500 ESNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQAVIINIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L + G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVNELTRKLQEAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVETGKVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M + EVI+       + 
Sbjct: 614 KDLGSMDVSEVISKLQQEIRSR 635


>gi|322377382|ref|ZP_08051873.1| threonine--tRNA ligase [Streptococcus sp. M334]
 gi|321281582|gb|EFX58591.1| threonine--tRNA ligase [Streptococcus sp. M334]
          Length = 647

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 158/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R                       + F +    +          D+
Sbjct: 407 IDVYEDFNLTEYRFRLSLRDPEDKE-------------KYFDNDQMWENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S+++ +       +N 
Sbjct: 619 GQKETQTVSVDDFVQAILADIANK 642


>gi|237736526|ref|ZP_04567007.1| threonyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
 gi|229421568|gb|EEO36615.1| threonyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
          Length = 638

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 154/443 (34%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +   Y   + +   RD      +L L    + ++  G   +LP G    + +  + + E 
Sbjct: 227 KLKDYLTLLEEAEKRDHRKLGKELDLF--FVSEYGPGFPIFLPKGMAIRNTLINLWKREH 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + + +LW  SG + +Y + M      ++      P +       ++  
Sbjct: 285 TLAGYTEIMTPIMLNKELWETSGHWYNYRENMYTST-IDETEFAIKPMNCPGGIIAYKYQ 343

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SY++LP    ++    R E      G+MR R F   DA+ F    +  +     + + 
Sbjct: 344 LHSYKDLPIRCGELGTVHRHEFSGALHGLMRVRCFTQDDAHIFMTPEQIEEEIIGVVNLI 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                   G                   E+ +   T   +   S +  +    +     +
Sbjct: 404 DKFYSKLFG------------------FEYHIELSTKPEKAIGSDEIWEKAESALAGALE 445

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            I     +     A Y    D    K+ D++    +     ++    F    ++      
Sbjct: 446 KIGKSYKLNPGDGAFYGPKLDF---KIKDAIGRTWQCGTIQLD----FNLPERFD----I 494

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++ G DG+ H    +     G++     ++   + G   +W        +++      + 
Sbjct: 495 SYIGEDGEKHRPVMIHRVVYGSIERFIGILIEHYAGAFPLWLAPTQVKVLTI------ND 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEI 418
             +   E+I   L + G     DD  E IG +   A+     P+Q+I+G   V + +V I
Sbjct: 549 ETKPYAEEICRTLLERGIRAELDDRAESIGYKIREANGKYKVPVQLIIGKNEVENREVNI 608

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R +  +  M L+E ++     
Sbjct: 609 RRRGSQEQTSMKLDEFLDMIVDE 631


>gi|237653686|ref|YP_002890000.1| threonyl-tRNA synthetase [Thauera sp. MZ1T]
 gi|237624933|gb|ACR01623.1| threonyl-tRNA synthetase [Thauera sp. MZ1T]
          Length = 638

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 146/442 (33%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +++E   RD      +L L    I   + G+  W   G      V   +R      G
Sbjct: 231 YLHMIEEAEKRDHRKLGRQLDLF--HIQDEAPGMVFWHAKGWTLWQQVEQYLRRTIGEHG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +  Y  +++       +     P +      IF   +KSY
Sbjct: 289 YQEVKTPQIVDRSLWEKSGHWGMY-SDLMFTTQSEKRDYAVKPMNCPCHIQIFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +    S  +      ++
Sbjct: 348 RDLPLRMAEFGSCHRNEPSGSLHGIMRVRNFVQDDAHIFCAESQVQAES-AEFIRLLQQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++  + P     + E    A+        ++       P E         
Sbjct: 407 YQDFGFTDVQVKLSTRPEKRVGTDEQWDAAEAALAAALDAQGLQYELQPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++       G        A +  
Sbjct: 458 --------GAFYGPKIEF---SLKDCLGRVWQCGTLQLDFNLPVRLG--------AEYVD 498

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D      V +    +G++     ++   H G   +W   V    +++       +   +
Sbjct: 499 EDNTKKVPVMLHRAILGSLERFIGILIEHHAGAMPLWLAPVQAVVMNI------SEGQAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E+  ARL K G  V  D   E+I  +     +   P Q+++G K  +   V ++ R  
Sbjct: 553 YAEEAVARLKKAGFRVEADLRNEKINYKIREHSVQKLPYQIVIGEKEKAAGLVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MSL+ +I          
Sbjct: 613 QDLGQMSLDSLIERWRREVEAK 634


>gi|90417311|ref|ZP_01225237.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
 gi|90330896|gb|EAS46159.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
          Length = 642

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 140/440 (31%), Gaps = 41/440 (9%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  L +   RD    + KL L    + + + G   W P G      +   +R +Q  
Sbjct: 229 KAYINRLAEAEKRDHRKINKKLDLY--HMQEEAPGSIFWHPKGWSVYSAIEEYMRNKQRE 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG  D +G +M  L   +D+     P +      +F   +K
Sbjct: 287 QGYQEIKTPQIVDMSLWEKSGHADKFGDDMFSLQT-DDRNYAVKPMNCPCHVQVFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F    +      ++      
Sbjct: 346 SYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRSFTQDDAHIFCTEEQIQPE-VSQFIDFLH 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   I  R  + P     S E                   D    +     D  
Sbjct: 405 EVYADFGFDEIIYRLSTRPPERVGSDE-----------------DWDRAEEALGQALDAK 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                 +    A Y    +     L D +    ++    ++                A +
Sbjct: 448 SLPWQELPGEGAFYGPKIEF---SLKDCIGRVWQLGTIQVDFSMPGRLD--------AQY 496

Query: 303 KGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG     V +    +G+      ++   ++G    W         ++          
Sbjct: 497 VAEDGARKVPVMLHRAILGSFERFIGILIEQYEGAFPFWLAPEQAVVANIT------DAQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +++   L   G  V  D   E+IG +     +   P  ++VG        V ++ R
Sbjct: 551 AEYAQEVAKSLQNKGFRVNCDLRNEKIGFKIRGHSMQRVPFILVVGDNEKESRTVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHR 441
                  + LE+V    +  
Sbjct: 611 DGKDLGSLPLEQVEAMCTTE 630


>gi|19745635|ref|NP_606771.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|94988057|ref|YP_596158.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94991943|ref|YP_600042.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|139474254|ref|YP_001128970.1| threonyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|306827837|ref|ZP_07461106.1| threonine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
 gi|25453286|sp|Q8P234|SYT_STRP8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123080426|sp|Q1JMY5|SYT_STRPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123382336|sp|Q1JD10|SYT_STRPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225506|sp|A2RFY5|SYT_STRPG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19747765|gb|AAL97270.1| putative threonyl-tRNA synthetase 1 [Streptococcus pyogenes
           MGAS8232]
 gi|94541565|gb|ABF31614.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94545451|gb|ABF35498.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|134272501|emb|CAM30764.1| threonyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|304429946|gb|EFM32986.1| threonine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
          Length = 647

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 86/449 (19%), Positives = 164/449 (36%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F  TPE  +  + +    
Sbjct: 345 VRSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIFV-TPEQIQEEFQRALQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDF 239
            + ++    L     R                  D  +T  +  + +  +          
Sbjct: 404 IIDVYADFNLTDYRFRLS--------------YRDPNDTHKYYDNDEMWENAQSMLKAAL 449

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D++       E   A Y    D+   ++  +L   + +S   ++    F    ++     
Sbjct: 450 DEMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD---- 498

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             + GADG++H   M   G+ +       I             +          I   ++
Sbjct: 499 LKYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPHQV----TVIPISNE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 555 AHIDYAWEVAKTLRDRGVRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +      S+EE +          +RP
Sbjct: 615 RYGSKATHTESVEEFVENILADIARKSRP 643


>gi|326336128|ref|ZP_08202300.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691637|gb|EGD33604.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 649

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 86/451 (19%), Positives = 163/451 (36%), Gaps = 39/451 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L T   ++  +G+  WLP G    + + A +R+ Q 
Sbjct: 227 LTEYLTLLEEAKKRDHRKLGKELELFT-FSNKVGQGLPLWLPKGAALRERLEAFLRKAQK 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G  ++  P +   +L+V SG ++ YGK+  +        +  +  P +     +I+ S
Sbjct: 286 QAGYEQVVTPHIGHKNLYVTSGHWEKYGKDSFQPIATPNEGEEYLLKPMNCPHHCEIYNS 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           H  SY++LP  F +    +R E      G+ R R F   DA+ F  TPE     +  +  
Sbjct: 346 HPWSYKDLPKRFAEFGTVYRYEQSGELHGLTRVRCFTQDDAHIFC-TPEQLDAEFKHVID 404

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG ++   +                  D      +   D       S   + 
Sbjct: 405 LVLYVFGSLGFENFTAQVSLR--------------DPENLSKYIGSDENWAKAESAIINA 450

Query: 240 DDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
               +L  ++E    A Y    D     + D+L  + ++    ++               
Sbjct: 451 AKEKNLTYVIETGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERF 499

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +KGAD + H    +     G+M    A++     G   +W           +NI + 
Sbjct: 500 DLWYKGADNEMHRPVMIHRAPFGSMERFVAILLEHTAGNLPLW------LVPEQVNILSV 553

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +       K+   L +       D+  E IG +   A+   +P  +IVG +   +  + 
Sbjct: 554 SEKYEGYAYKVANLLQEADLRPHVDNRNETIGKKIREAETQKYPYMIIVGEEEEKNGTLS 613

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN-RP 447
           ++         M + + I       + N RP
Sbjct: 614 VRKHGGADLGTMKIADFITLIQEEINKNIRP 644


>gi|332358962|gb|EGJ36783.1| threonine--tRNA ligase [Streptococcus sanguinis SK49]
          Length = 647

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 153/445 (34%), Gaps = 32/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             KY     +   RD      +L L   MI  +  +G+  WLP G      +   I +++
Sbjct: 228 LKKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKE 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRS 120
             +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ 
Sbjct: 286 LASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKH 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SYR LP    +I +  R E       ++    +  +     +TPE  +  + +    
Sbjct: 346 HVHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R            +     D  E          +          D
Sbjct: 406 IIDVYADFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALD 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 453 EMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I   +         +     +    I   ++ 
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEA 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++ 
Sbjct: 558 HIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                   +S++E +       ++ 
Sbjct: 618 YGQKETHTISVDEFVEQILADIASK 642


>gi|328946743|gb|EGG40881.1| threonine--tRNA ligase [Streptococcus sanguinis SK1087]
          Length = 647

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 152/445 (34%), Gaps = 32/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             KY     +   RD      +L L   MI  +  +G+  WLP G      +   I +++
Sbjct: 228 LKKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKE 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRS 120
             +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ 
Sbjct: 286 LASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKH 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SYR LP    +I +  R E       ++    +  +     +TPE  +  + +    
Sbjct: 346 HVHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R            +     D  E          +          D
Sbjct: 406 IIDVYADFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALD 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 453 EMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I   +         +     +    I   ++ 
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEA 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++ 
Sbjct: 558 HIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                   + ++E +       ++ 
Sbjct: 618 YGQKETHTIPVDEFVEQILADIASK 642


>gi|89900130|ref|YP_522601.1| threonyl-tRNA synthetase [Rhodoferax ferrireducens T118]
 gi|89344867|gb|ABD69070.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Rhodoferax
           ferrireducens T118]
          Length = 669

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 145/441 (32%), Gaps = 37/441 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  L +L+E   RD      +L L    I  H+ G+  W P G      V   +R+    
Sbjct: 257 QQHLTMLEEAEKRDHRKLGRELDLF--HIDDHAPGLVFWHPKGWTLWQGVEQYMRQVYRD 314

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +D Y + M    +   +     P +      IF+  IK
Sbjct: 315 NGYQEVKGPQILDKSLWEKTGHWDKYRENMFT-TESEKREYALKPMNCPGHILIFKQGIK 373

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F   D + F    +  +   +       
Sbjct: 374 SYRDLPLRYGEFGQCHRNEPSGGLHGIMRVRGFTQDDGHIFCTEDQILQECVDYT-ALLQ 432

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G ++I  +  + P                      S D  D    +        
Sbjct: 433 KVYADFGFENIIYKVATRPEQR-----------------IGSDDVWDKAEAALIESLRAS 475

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I     A Y    +     L D++  + +     ++              + A +
Sbjct: 476 GREFEISPGEGAFYGPKIEY---TLKDAIGRHWQCGTIQVDFSMP--------ERLDAEY 524

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG  H    +    +G++     ++     G    W          L    A  + C
Sbjct: 525 VGEDGARHRPVMLHRAIVGSLERFIGILIEESAGALPTWL--APVQVAVLNITDAQAEYC 582

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           R+  EK+   L         D   E+I  +     +   P  ++VG K  +   V ++ R
Sbjct: 583 REIVEKLKNALPDQRLRAVADLRNEKITFKIREHSMQKLPYILVVGDKEKAAGTVAVRAR 642

Query: 422 LTGIREDMSLEEVINYASHRF 442
                  MSL+  +   S   
Sbjct: 643 GGLDLGVMSLDAFVQKISSDI 663


>gi|188577599|ref|YP_001914528.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522051|gb|ACD59996.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 649

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 138/438 (31%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 247 YILRMEEADKRDHRRIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 304

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 305 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 363

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 364 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIESEVTAFHQQALAV 422

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P                           D    +  +       
Sbjct: 423 YTAFGFDDIQIKIALRPEKR-----------------LGDDATWDKAEAALRSALGVCGV 465

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L D++    ++    ++       G        A +  
Sbjct: 466 EWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 514

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   V     ++           D
Sbjct: 515 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSWLAPVQVVVANIT------DAQAD 568

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R  
Sbjct: 569 YVDAVRKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSG 628

Query: 424 GIREDMSLEEVINYASHR 441
                M++   I      
Sbjct: 629 EDLGTMTVSAFIERLQAE 646


>gi|237808486|ref|YP_002892926.1| threonyl-tRNA synthetase [Tolumonas auensis DSM 9187]
 gi|259516783|sp|C4LFH3|SYT_TOLAT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|237500747|gb|ACQ93340.1| threonyl-tRNA synthetase [Tolumonas auensis DSM 9187]
          Length = 642

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 140/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   IR++     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWIIFRELETFIRQKLREYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSY
Sbjct: 290 YEEVKGPFMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +        + + Y   
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCAENQIQDEVSACIRMVYDTY 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G K+I ++  + P     S E                   D    + +        
Sbjct: 409 ST-FGFKNIAVKLSTRPEKRIGSDE-----------------MWDRAEEALSAALKHNNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++       G        AT+ G
Sbjct: 451 EFDLQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFALPGRLG--------ATYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D   H  V +    +G+M     ++     G   +W   +    +++           D
Sbjct: 500 EDNDRHVPVMIHRAILGSMERFIGILTEETAGYFPLWLAPLQAVVMNIT------DNQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++   L++ G     D   E+IG +     L   P  ++ G K +   ++ ++ R  
Sbjct: 554 YVKEVVNTLNESGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDKEMEAGEIAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                  + +++       S  
Sbjct: 614 VDLGKFKVTDLVEQLRKEISTR 635


>gi|332358692|gb|EGJ36515.1| threonine--tRNA ligase [Streptococcus sanguinis SK355]
          Length = 647

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 152/445 (34%), Gaps = 32/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             KY     +   RD      +L L   MI  +  +G+  WLP G      +   I +++
Sbjct: 228 LKKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKE 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRS 120
             +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ 
Sbjct: 286 LASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKH 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SYR LP    +I +  R E       ++    +  +     +TPE  +  + +    
Sbjct: 346 HVHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R            +     D  E          +          D
Sbjct: 406 IIDVYADFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALD 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 453 EMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I   +         +     +    I   ++ 
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEA 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++ 
Sbjct: 558 HIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                   + ++E +       ++ 
Sbjct: 618 YGQKETHTIPVDEFVEQILADIASK 642


>gi|253755215|ref|YP_003028355.1| threonyl-tRNA synthetase [Streptococcus suis BM407]
 gi|251817679|emb|CAZ55427.1| threonyl-tRNA synthetase [Streptococcus suis BM407]
          Length = 650

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 177/449 (39%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRTLERYITDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      ++++H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYSEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F  TPE  +  + K    
Sbjct: 347 VRSYRELPVRIAELGMMHRYEKSGALTGLQRVREMTLNDGHIFV-TPEQIQEEFKKALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDF 239
            + ++    L     R                  D  + + +  + +  +          
Sbjct: 406 IIDVYADFNLNDYRFRLS--------------YRDPEDKEKYYDNDEMWENAQRMLKGAM 451

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D++       E   A Y    D+   ++  +L   + +S   ++    F    ++     
Sbjct: 452 DEMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERF----G 500

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            T+ GADG++H   M   G+ +       I    +     +P  +AP ++++I I    +
Sbjct: 501 LTYIGADGEEHRPVMIHRGVISTMERFTAILI--ETYKGAFPTWLAPTQVTMIPISV--E 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+   L   G  V  D+  E++  +   +     P Q+IVG K + D+ V ++
Sbjct: 557 AHLDYAWKVAKELQDRGVRVHVDERNEKMQYKIRQSQTSKIPYQLIVGDKEMEDNAVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +   +  S+ E +++        +RP
Sbjct: 617 RYGSKATQTQSVSEFVDHILADIARKSRP 645


>gi|146319020|ref|YP_001198732.1| threonyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|146321228|ref|YP_001200939.1| threonyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|253752085|ref|YP_003025226.1| threonyl-tRNA synthetase [Streptococcus suis SC84]
 gi|253753910|ref|YP_003027051.1| threonyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|166225507|sp|A4W2F0|SYT_STRS2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225509|sp|A4VW43|SYT_STRSY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145689826|gb|ABP90332.1| Threonyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|145692034|gb|ABP92539.1| Threonyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|251816374|emb|CAZ52005.1| threonyl-tRNA synthetase [Streptococcus suis SC84]
 gi|251820156|emb|CAR46495.1| threonyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|292558668|gb|ADE31669.1| Threonyl-tRNA synthetase [Streptococcus suis GZ1]
 gi|319758452|gb|ADV70394.1| threonyl-tRNA synthetase [Streptococcus suis JS14]
          Length = 650

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 177/449 (39%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRTLERYITDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      ++++H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYSEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F  TPE  +  + K    
Sbjct: 347 VRSYRELPVRIAELGMMHRYEKSGALTGLQRVREMTLNDGHIFV-TPEQIQEEFKKALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDF 239
            + ++    L     R                  D  + + +  + +  +          
Sbjct: 406 IIDVYADFNLNDYRFRLS--------------YRDPEDKEKYYDNDEMWENAQRMLKGAM 451

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D++       E   A Y    D+   ++  +L   + +S   ++    F    ++     
Sbjct: 452 DEMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERF----G 500

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            T+ GADG++H   M   G+ +       I    +     +P  +AP ++++I I    +
Sbjct: 501 LTYIGADGEEHRPVMIHRGVISTMERFTAILI--ETYKGAFPTWLAPTQVTMIPISV--E 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+   L   G  V  D+  E++  +   +     P Q+IVG K + D+ V ++
Sbjct: 557 AHLDYAWKVAKELQDRGVRVHVDERNEKMQYKIRQSQTSKIPYQLIVGDKEMEDNAVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +   +  S+ E +++        +RP
Sbjct: 617 RYGSKATQTQSVSEFVDHILADIARKSRP 645


>gi|332367135|gb|EGJ44871.1| threonine--tRNA ligase [Streptococcus sanguinis SK1059]
          Length = 647

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 152/445 (34%), Gaps = 32/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             KY     +   RD      +L L   MI  +  +G+  WLP G      +   I +++
Sbjct: 228 LKKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKE 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRS 120
             +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ 
Sbjct: 286 LASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKH 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SYR LP    +I +  R E       ++    +  +     +TPE  +  + +    
Sbjct: 346 HVHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R            +     D  E          +          D
Sbjct: 406 IIDVYADFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALD 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 453 EMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I   +         +     +    I   ++ 
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEA 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++ 
Sbjct: 558 HIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                   + ++E +       ++ 
Sbjct: 618 YGQKETHTIPVDEFVEQILADIASK 642


>gi|56460507|ref|YP_155788.1| threonyl-tRNA synthetase [Idiomarina loihiensis L2TR]
 gi|73919798|sp|Q5QYN4|SYT_IDILO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56179517|gb|AAV82239.1| Threonyl-tRNA synthetase [Idiomarina loihiensis L2TR]
          Length = 638

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 152/448 (33%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD    +    L      + + G+  W   G      +   IRE+
Sbjct: 227 KQLKAYLQRLEEAEKRDHRKIAKAQDLF--HWQEEAPGMVFWHHNGWTIFRELETYIREK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW +SG ++ +  E++      ++     P +      IF  
Sbjct: 285 MREYEYQEVKGPMMMDRVLWEKSGHWEKF-SELMFTTSSENREYAVKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +        
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFC-TEQQVQEEVAGCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G ++I ++  + P                           D    +     
Sbjct: 403 MVYETYKTFGFENIDVKLSTRPEKR-----------------LGDDATWDRSETALAQAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +     S +    A Y    +     LFD L    +     ++       G        
Sbjct: 446 KNNDIDFSYLPGEGAFYGPKIEF---TLFDCLGRAWQCGTIQLDFALPGRLG-------- 494

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+ G D + H    +    +G++     ++    +     +P  ++P ++ L+NI  + 
Sbjct: 495 ATYVGEDNERHTPVMIHRAILGSLERFMGILI---EEYAGHFPLWLSPTQVVLMNITDN- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   K+   L++ G     D   E+IG +     L   P  ++VG K V   +V +
Sbjct: 551 --QSDYVRKVVKTLNEKGIRASADLRNEKIGFKIREHTLKRVPYLLVVGDKEVEAGEVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R         LE+ I          +
Sbjct: 609 RTRGGEDLGKFPLEDFITRVEDEVRTRK 636


>gi|21243325|ref|NP_642907.1| threonyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|25453288|sp|Q8PJE1|SYT_XANAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21108867|gb|AAM37443.1| threonyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 634

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 139/438 (31%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 232 YILRMEEADKRDHRRIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L P+             L +
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCLEPQIESE-VTAFHQQALAV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P                           D    +  +       
Sbjct: 408 YTAFGFDDIQIKIALRPEKR-----------------LGDDATWDKAEAALRSALGVCGV 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L D++    ++    ++       G        A +  
Sbjct: 451 EWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 499

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   V     ++           +
Sbjct: 500 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSWLAPVQVVVANIT------DAQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R  
Sbjct: 554 YVDSVRKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSG 613

Query: 424 GIREDMSLEEVINYASHR 441
                M++   I      
Sbjct: 614 EDLGTMTVSAFIERLQAE 631


>gi|261821451|ref|YP_003259557.1| threonyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
 gi|261605464|gb|ACX87950.1| threonyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
          Length = 642

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 146/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   + + + RD      +L L    + + + G+  W   G      + A +R +  
Sbjct: 229 LASYLQRLEEASKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEAFVRMKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    +W ++G +++Y + M       ++     P +      IF   +
Sbjct: 287 SYQYQEVKGPFMMDRVMWEKTGHWENYKEAMFT-TSSENREYCIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +      N      
Sbjct: 346 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G + I ++  + P     S E                   D           +
Sbjct: 405 YDMYSTFGFEKIVVKLSTRPEKRIGSDE-----------------MWDRAEADLAAALTE 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +      A Y    +     L D L    +     ++    F    +    ++A+
Sbjct: 448 NNIEFAYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGR----LNAS 496

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G   +    V +    +G+M     ++     G    W   V    +++         
Sbjct: 497 YVGESNERQVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L + G  V  D   E+IG +     L   P  ++ G K V   KV ++ 
Sbjct: 551 QADYVNELTQKLQEAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       + + EVI+       + 
Sbjct: 611 RRGKDLGSLDVSEVISKLLQEIRSR 635


>gi|306825714|ref|ZP_07459053.1| threonine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432075|gb|EFM35052.1| threonine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 647

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 157/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEI 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     + PE  +  + K+    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVAPEQIEEEFKKILQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          DD
Sbjct: 407 IDVYEDFNLTDYRFRLS-----YRDPEDKHKYFDNDEM--------WENAQRMLKAAMDD 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MELDYFEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + + ++E +       +N 
Sbjct: 619 GQKETQTVPVDEFVAAILADIANK 642


>gi|30020454|ref|NP_832085.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|229127762|ref|ZP_04256751.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|29896005|gb|AAP09286.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|228655839|gb|EEL11688.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
          Length = 640

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 155/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TP+  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPKQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             + +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYANEIALKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E ++L+  +        N +
Sbjct: 616 EEKSEVIALDVFVATIEEEIKNRK 639


>gi|311694949|gb|ADP97822.1| prolyl-tRNA synthetase [marine bacterium HP15]
          Length = 577

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 123/282 (43%), Positives = 168/282 (59%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +   +E P DAEI SH+LMLR GMI + + G+Y+WLP+G + L  V  I+REE
Sbjct: 1   MRASRYLIATQKETPADAEIISHQLMLRAGMIRKLAAGLYTWLPMGLRTLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +P +Q A+LW ESGR+  YG E+LR+ DR+ +   +GPTHEEV+TD+ R+
Sbjct: 61  MDKSGAQEVLMPAVQPAELWEESGRWTQYGGELLRMKDRHGRDFCFGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQ+Q KFRDE RPRFGVMR+REFLMKDAYSF L  E    +Y  M  +
Sbjct: 121 EISSYKELPANFYQVQTKFRDERRPRFGVMRAREFLMKDAYSFHLNAESLNETYELMHRT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    ++A+SG IGG  SHEF VLA +GE  +       D+    E  +  
Sbjct: 181 YCAIFDRFGLDYRAVQADSGAIGGSASHEFHVLASSGEDDIVF-STGSDYAANIEKAEAV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                     +     A       E +   L  +   + + +
Sbjct: 240 APSGTRPAPAEEMKEVATPDQKTIEAVSQLLGIDATRTVKTL 281



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 71/193 (36%), Positives = 108/193 (55%), Gaps = 3/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A      D+ N    D  P+ K      RGIEVGHIF  G KYS  M+AT    +GK
Sbjct: 378 ERDAALERVEDLRNVVEGDPSPDGKGTLEIRRGIEVGHIFKLGNKYSTAMNATVLDENGK 437

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              + MG YG+G  RVVAA IE +HD  GIIWPD++APF+++++ + A       +A EK
Sbjct: 438 TVIMDMGCYGLGVSRVVAAAIEQNHDENGIIWPDAIAPFQVAIVTLNAHKSPTVAEAGEK 497

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y +L + G DV  DD  E+ G +FA  +L+G P + +V  + ++   +E K R    ++
Sbjct: 498 LYEQLRQAGYDVLLDDRKERPGVKFADMELIGIPHRFVVSERGLAAGTLEYKGRKDAEKQ 557

Query: 428 DMSLEEVINYASH 440
           D+ + E + +  +
Sbjct: 558 DVPVAEALPFLVN 570


>gi|260655005|ref|ZP_05860493.1| threonine--tRNA ligase [Jonquetella anthropi E3_33 E1]
 gi|260630320|gb|EEX48514.1| threonine--tRNA ligase [Jonquetella anthropi E3_33 E1]
          Length = 623

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 155/442 (35%), Gaps = 42/442 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
            Y   + +   RD      ++ L +   H+   G   + P G   ++++    R      
Sbjct: 212 TYLKRMEEAKKRDHRKIGKEMDLFS--FHKEGIGFPFFHPKGMVVMNSLLDFWRRLHTLN 269

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E   P + + DLWV+SG +D Y + M      ++      P +      I++  + S
Sbjct: 270 GYSEARTPMILNRDLWVQSGHWDHYQQNM-YFTTIDEMPCAIKPMNCPGGILIYKDRLHS 328

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH-SYNKMFVSYL 182
           Y+  P    ++    R E      G+MR R F   DA+ F    +      +      Y 
Sbjct: 329 YKEFPIRLAELGHVHRHEKTGELHGLMRVRSFTQDDAHHFCTPEQIKDEVKFIMALDDY- 387

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ ++      +   + P     S E    A+                  +     ++ 
Sbjct: 388 -VYSKVFGFKYHVELSTRPDNSIGSDELWATAEK-----------------ALQETLEET 429

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
            +   +     A Y    D H E              R  + G I              +
Sbjct: 430 NTPYVLNPGDGAFYGPKIDFHLED----------CIGRTWQCGTI-QLDFSMPEKFDMVY 478

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DGK+H    +    +G++     ++   + G    W   +AP ++ ++ +    +  
Sbjct: 479 IGPDGKEHRPVMLHRTILGSIERFMGILIEQYAGAFPYW---MAPVQVKILPVN---ESH 532

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               + +  +L+  G  V  D   E++G +   A +   P  +++G K V +  V ++ R
Sbjct: 533 VAYAKDLKDQLADRGHRVEIDLSDEKLGKKIRNAQVEKVPFMLVIGDKEVENKTVALRDR 592

Query: 422 LTGIREDMSLEEVINYASHRFS 443
             G +  +S E++    ++++ 
Sbjct: 593 AEGDKGSVSQEQLFELLANQYD 614


>gi|228478293|ref|ZP_04062901.1| threonyl-tRNA synthetase [Streptococcus salivarius SK126]
 gi|228249972|gb|EEK09242.1| threonyl-tRNA synthetase [Streptococcus salivarius SK126]
          Length = 648

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 157/447 (35%), Gaps = 34/447 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLKRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRVLERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D    +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPTMDMGDGEAFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  K  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVTPEQIKDEFQRTLQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R                       + F + +  +       +  DD
Sbjct: 407 IDVYEDFNLTDYRFRLS-------------YRDPKDTHKYFDNDEMWENAQSMLKSAMDD 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L   + +S   ++    F    ++       
Sbjct: 454 MELDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +          I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPQQV----TVIPVSNEAH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G  V  D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 TDYAWEVAKQLRDRGIRVEVDERNEKMQYKIRASQTQKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFS-NNRP 447
                   ++ E +       +  +RP
Sbjct: 619 GQKQTHTEAVSEFVENILADIARKSRP 645


>gi|167758905|ref|ZP_02431032.1| hypothetical protein CLOSCI_01251 [Clostridium scindens ATCC 35704]
 gi|167663312|gb|EDS07442.1| hypothetical protein CLOSCI_01251 [Clostridium scindens ATCC 35704]
          Length = 641

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 143/443 (32%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L   M+     G   +LP G    + +    RE     
Sbjct: 229 EYLHMMEEAKKRDHRKLGRELGLF--MMCDEGPGFPFFLPKGMVLKNTLLDYWRELHKEN 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E+S P + S  LW  SG +D Y   M      +++     P +      +++S  +S
Sbjct: 287 GYVEVSTPIILSRHLWENSGHWDHYKDNMYTTM-IDEEDYAVKPMNCPGGMLVYKSEPRS 345

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y++LP    ++ L  R E      G+ R R F   DA+ F    +          +    
Sbjct: 346 YKDLPLRMGELGLVHRHEKSGALHGLFRVRCFTQDDAHIFMTPEQIRDEIKGVARLI--- 402

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                             I      ++ V   T       S +  +          DD+ 
Sbjct: 403 ----------------DEIYSLFGFKYHVELSTRPDNSMGSDEDWEMATEGLRGALDDLG 446

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H E              R  + G I     +        + 
Sbjct: 447 LDYMVNEGDGAFYGPKIDFHLED----------SIGRTWQCGTI-QLDMQMPQRFDLEYT 495

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG+ H    +     G++     ++     G    W   V    + +       +   
Sbjct: 496 GADGEKHRPIMIHRVAFGSIERFIGILIEHFAGAFPTWLAPVQVKVLPI------SEKHL 549

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  +K+  +L + G     D+  E+IG +   A +   P  ++VG+K    + V ++ R 
Sbjct: 550 EYGKKVLEQLEEAGIRAELDERAEKIGYKIREAQMNKIPYMLVVGAKEEEQNLVSVRSRF 609

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G      +   I+         
Sbjct: 610 AGDEGQKDIASFIDAIKEEIQAK 632


>gi|229085293|ref|ZP_04217535.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-44]
 gi|228698012|gb|EEL50755.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-44]
          Length = 642

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 162/443 (36%), Gaps = 40/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + + +RE Q +  
Sbjct: 235 YLQFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELESFLREIQQKYD 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW ESG +D Y   M   ++ ++K+    P +      +F+  ++SY
Sbjct: 293 YQEVRTPIMMNQGLWEESGHWDHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKHKLRSY 351

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G++R R F   DA+   +TPE  +     +      +
Sbjct: 352 RDLPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIESEIKSVLQQIDYV 410

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P       E    A++                 +     + +  
Sbjct: 411 YRTFGFEY-EVELSTRPEDSMGDVELWNQAES-----------------ALENVLESLNY 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   + D+L  + +     ++    F    K+       +  
Sbjct: 453 KYRVNEGDGAFYGPKIDFH---IKDALKRSHQCGTVQLD----FQMPEKFD----LNYID 501

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              +      +    +G+      ++     G    W  SV    I + N+     V  +
Sbjct: 502 ERNEKRRPVVIHRAVLGSFDRFLGILIEHFGGAFPAWLASVQVKIIPVSNL-----VHEE 556

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++I  +L  VG  V  D  GE++G +   A +   P  +++G K + +  V ++    
Sbjct: 557 YTKEIEEKLQSVGLRVERDVRGEKLGYKIREAQIQKVPYVLVIGDKEMENGAVNVRKYGE 616

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
              E +SL   I        N +
Sbjct: 617 EKSEVVSLATFIESLQVEIHNRK 639


>gi|104783084|ref|YP_609582.1| prolyl-tRNA synthetase [Pseudomonas entomophila L48]
 gi|123380820|sp|Q1I6D7|SYP_PSEE4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|95112071|emb|CAK16798.1| prolyl-tRNA synthetase [Pseudomonas entomophila L48]
          Length = 571

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 119/237 (50%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+D+    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHDRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNMYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGL   P++A++G IGG  SHEF VLA +GE  V  S    D+    E  
Sbjct: 181 YSNIFTRLGLDFRPVQADTGSIGGSYSHEFHVLASSGEDDVIFSDS-SDYAANIEKA 236



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/207 (37%), Positives = 114/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  +
Sbjct: 364 DDKHYFGVNWERDLPVPQVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEAL 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVVLSMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            V R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + ++D  +
Sbjct: 484 DVVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLADGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E KHR     + + L EV+ +   R  
Sbjct: 544 EYKHRTESEAQALPLNEVLTFLQARIR 570


>gi|300114474|ref|YP_003761049.1| threonyl-tRNA synthetase [Nitrosococcus watsonii C-113]
 gi|299540411|gb|ADJ28728.1| threonyl-tRNA synthetase [Nitrosococcus watsonii C-113]
          Length = 644

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 160/441 (36%), Gaps = 39/441 (8%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKG-IYSWLPLGQKALDNVNAIIRE 59
           +  + +L  L+E   RD       L L +  I + + G +  W P+G +    +    +E
Sbjct: 226 KALEAYLHRLEEAEKRDHRRIGSDLDLFS--IQEEAGGGLVFWHPMGARIRRVIEDFWQE 283

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                    +  P +   +LW  SG  D Y + M +  + + +     P +      +++
Sbjct: 284 RHTAASYETLYTPHIAHEELWQTSGHTDFYRESMYQPMEDDHQLYQLKPMNCPFHVLVYQ 343

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             ++SYR LP  + ++   +R E+     G+MR R F   DA+ F    +        + 
Sbjct: 344 GRLRSYRELPIRWAELGTVYRHEMSGALHGLMRVRGFTQDDAHIFCREEQIENE-ILGIL 402

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    G     +   + P                       +   D    +  + 
Sbjct: 403 DLTLEMLAAFGFDRYEIDLSTRPEKS-----------------VGPEAIWDQATQALRSA 445

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            D      ++ E   A Y    D+   K+ D++    + S   ++    F    ++++  
Sbjct: 446 LDKKGLDYAVDEGGGAFYGPKIDI---KIEDAIGRKWQCSTVQLD----FNLPERFAMEY 498

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A       +   + +    +G++     V+   ++     +P  +AP ++ +++I    
Sbjct: 499 VAE---DGARHRPIMIHRAVLGSLERFFGVLIEHYE---GKFPPWLAPIQVVVMSITDRQ 552

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++   +   G     D   E+IG +     L   P  +++G + V++  V +
Sbjct: 553 EG---YARQVEETMKNKGFRSLLDLRNEKIGFKIREHTLRRIPYLLVIGDREVANQTVAV 609

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           + R +     MSL+  + + S
Sbjct: 610 RTRYSQDLGVMSLDAFMEHLS 630


>gi|229011636|ref|ZP_04168819.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|228749594|gb|EEL99436.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 639

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 155/447 (34%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q
Sbjct: 231 KLEEYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQ 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N     E+  P + + +LW +SG +  Y   M   ++ + K+    P +      +F++ 
Sbjct: 289 NEYNYQEVRTPFMMNQELWEKSGHWGHYKDNM-YFSEVDHKSFALKPMNCPGHMLMFKNK 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +     R E      G++R R F   DA+   +TPE  +     +   
Sbjct: 348 LHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVLAQ 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G                   E+ V   T            +    +      
Sbjct: 407 IDYVYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAELALENVLQ 448

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     + E   A Y    D H   + D+L  + +     ++    F    K+      
Sbjct: 449 SLNYKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTVQLD----FQMPEKFD----L 497

Query: 301 TFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   + +      +    +G++    A++     G    W        + +  I   + 
Sbjct: 498 NYIDENNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNA 552

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V      +I  +L++ G  V  D   E++G +   A +   P  +++G K +    V ++
Sbjct: 553 VHEQYINRIADKLAQAGIRVERDIRDEKLGYKIREAQMQKVPYVLVIGDKEMESEAVNVR 612

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
                  E + L+  +        N +
Sbjct: 613 KYGEEKSEVVELDAFVESMKEEIKNRK 639


>gi|94993836|ref|YP_601934.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
 gi|123080137|sp|Q1J7X1|SYT_STRPF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94547344|gb|ABF37390.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
          Length = 647

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/449 (19%), Positives = 164/449 (36%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F  TPE  +  + +    
Sbjct: 345 VRSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIFV-TPEQIQEEFRRALQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDF 239
            + ++    L     R                  D  +T  +  + +  +          
Sbjct: 404 IIDVYADFNLTDYRFRLS--------------YRDPNDTHKYYDNDEMWENAQSMLKAAL 449

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D++       E   A Y    D+   ++  +L   + +S   ++    F    ++     
Sbjct: 450 DEMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD---- 498

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             + GADG++H   M   G+ +       I             +          I   ++
Sbjct: 499 LKYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPHQV----TVIPISNE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 555 AHIDYAWEVAKTLRDRGVRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +      S+EE +          +RP
Sbjct: 615 RYGSKATHTESVEEFVENILADIARKSRP 643


>gi|307707001|ref|ZP_07643798.1| threonyl-tRNA synthetase [Streptococcus mitis SK321]
 gi|307617527|gb|EFN96697.1| threonyl-tRNA synthetase [Streptococcus mitis SK321]
          Length = 647

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 158/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S+++ +       +N 
Sbjct: 619 AQKETQTVSVDDFVQAILADIANK 642


>gi|239814876|ref|YP_002943786.1| threonyl-tRNA synthetase [Variovorax paradoxus S110]
 gi|259516786|sp|C5CUU2|SYT_VARPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239801453|gb|ACS18520.1| threonyl-tRNA synthetase [Variovorax paradoxus S110]
          Length = 635

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 140/443 (31%), Gaps = 38/443 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L    I + + G+  W P G      V   +R     T
Sbjct: 230 QYIQRIEEAEKRDHRKLGKELDLF--HIDEVAPGVVFWHPKGWALWQAVEQYMRGIYRDT 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    LW ++G + +Y   M    +   +     P +      IF+S ++S
Sbjct: 288 GYWEVKGPQILDKSLWEKTGHWQNYRDNMFT-TESEKREYALKPMNCPGHVLIFKSDLRS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + +     R+E      G+MR R F   D + F    +  +           +
Sbjct: 347 YRDLPLRYGEFGQCHRNEPSGALHGIMRVRGFTQDDGHIFCTEDQILEECVAYTAQ-LQK 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   I  +  + P     S E    A+    +                       
Sbjct: 406 VYADFGFTEILYKVATRPDNRVGSDELWDKAEHAVMEALRRS-----------------G 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I     A Y    +     L D+L    +     ++       G +Y         
Sbjct: 449 VDFIISPGDGAFYGPKIEY---TLKDALGRQWQCGTMQVDFNTAERLGGEY-------VT 498

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              G+ H V +    +G++     ++   H G    W           + +    +   D
Sbjct: 499 ETSGRAHPVMLHRAIVGSLERFIGMLIEHHAGALPAW------LAPVQVAVLNISEGQAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L   G  V  D   E+I  +     L   P  ++VG K      V ++ R  
Sbjct: 553 YAASVAKTLQNQGLRVQLDLHNEKITYKIRKHSLQKLPYILVVGDKEREAGAVAVRARGN 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                MSLE  +       ++ R
Sbjct: 613 QDLGAMSLESFVQRLVQDVADKR 635


>gi|325690794|gb|EGD32795.1| threonine--tRNA ligase [Streptococcus sanguinis SK115]
          Length = 647

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 152/445 (34%), Gaps = 32/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             KY     +   RD      +L L   MI  +  +G+  WLP G      +   I +++
Sbjct: 228 LKKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKE 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRS 120
             +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ 
Sbjct: 286 LASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKH 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SYR LP    +I +  R E       ++    +  +     +TPE  +  + +    
Sbjct: 346 HVHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R            +     D  E          +          D
Sbjct: 406 IIDVYADFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALD 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 453 EMDVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I   +         +     +    I   ++ 
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEA 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++ 
Sbjct: 558 HIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                   + ++E +       +N 
Sbjct: 618 YGQKETHTIPVDEFVEQILADIANK 642


>gi|332290253|ref|YP_004421105.1| threonyl-tRNA synthetase [Gallibacterium anatis UMN179]
 gi|330433149|gb|AEC18208.1| threonyl-tRNA synthetase [Gallibacterium anatis UMN179]
          Length = 643

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 142/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLKRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRAKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 QYDYQEVKGPFMMDRVLWEKTGHWQNY-GDLMFTTSSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T    +          
Sbjct: 346 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TENQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G   I ++  + P     S E                   D          + 
Sbjct: 405 YDIYSTFGFTDIYVKLSTRPEHRIGSDE-----------------MWDRAEADLAKALEH 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +     A Y    +     L DS+    +     ++               +A+
Sbjct: 448 NGLEYEVQPGEGAFYGPKLEF---ALRDSIGREWQCGTVQLDFALPGRL--------NAS 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D +      +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNERKTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  + +   LS  G  V  D   E+IG +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QADYVQNVVKTLSDAGLRVKSDLRNEKIGFKIREHTLKRVPYMLVCGDKEIAEGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE      ++  N 
Sbjct: 611 RKGADLGTFTVEEFTEILKNQVRNR 635


>gi|229079560|ref|ZP_04212097.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|228703729|gb|EEL56178.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-2]
          Length = 640

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 155/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 KYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TP+  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPKQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             + +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYANEIAHKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E ++L+  +        N +
Sbjct: 616 EEKSEVIALDVFVATIEEEIKNRK 639


>gi|327439263|dbj|BAK15628.1| threonyl-tRNA synthetase [Solibacillus silvestris StLB046]
          Length = 643

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 167/442 (37%), Gaps = 32/442 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K+ L +L+E   RD      +L L         +G+  WLP G      +   I +++  
Sbjct: 232 KHHLQMLEEAKERDHRKIGKELDLFMT-SQTVGQGLPLWLPNGATIRRTIERYIVDKELS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L S  L+  SG ++ Y   M    + +++ ++  P +      +F++ + 
Sbjct: 291 LGYKHVYTPVLGSKKLYETSGHWEHYQDGMFPPMEMDNETLVLRPMNCPHHMMVFKNGLH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR+LP    ++    R E+      ++    +  +     + P+  K  + K+    L 
Sbjct: 351 SYRHLPIRIAELGTMHRYEMSGAVSGLQRVRGMTLNDAHIFVRPDQIKAEFKKVVELILE 410

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK-DFMDFPIPSENTDFDDI 242
           ++    LK    R                  D   T+ +       +          D++
Sbjct: 411 VYKDFDLKDFSFRLS--------------YRDPNNTEKYFDDDQMWETAQAMLKEAMDEL 456

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A Y    DV   ++  ++ + + +S   ++    F    ++      ++
Sbjct: 457 GYDYFIAEDEAAFYGPKLDV---QVKTAIGKEETLSTAQLD----FLLPQRFD----LSY 505

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG+     +     G +  +   +    +     +P  +AP + ++I +   + V  
Sbjct: 506 IGEDGQPQRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQATIIPV--SNAVHY 561

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++  +L+  G  V  DD  E++G +   A +   P  +++G K V+++ V I+   
Sbjct: 562 DYAREVQEKLAAAGIRVEMDDREEKLGYKIREAQMQKIPYMLVLGDKEVAENAVNIRRYG 621

Query: 423 TGIREDMSLEEVINYASHRFSN 444
           +   E +S E+ +   +     
Sbjct: 622 SKDSETISFEQFLADITAEVKK 643


>gi|21909901|ref|NP_664169.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28896400|ref|NP_802750.1| threonyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
 gi|25453285|sp|Q8K8C0|SYT_STRP3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21904088|gb|AAM78972.1| putative threonyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28811651|dbj|BAC64583.1| putative threonyl-tRNA synthetase 1 [Streptococcus pyogenes SSI-1]
          Length = 647

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 164/449 (36%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F  TPE  +  + +    
Sbjct: 345 VRSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIFV-TPEQIQEEFQRALQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDF 239
            + ++    L     R                  D  +T  +  + +  +          
Sbjct: 404 IIDVYADFNLTDYRFRLS--------------YRDPNDTHKYYDNDEMWENAQSMLKAAL 449

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D++       E   A Y    D+   ++  +L   + +S   ++    F    ++     
Sbjct: 450 DEMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD---- 498

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             + GADG++H   M   G+ +       I             +          I   ++
Sbjct: 499 LKYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPHQV----TVIPISNE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + +  V ++
Sbjct: 555 AHIDYAWEVAKTLRDRGVRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEEKSVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +      S+EE +          +RP
Sbjct: 615 RYGSKATHTESVEEFVENILADIARKSRP 643


>gi|209558991|ref|YP_002285463.1| threonyl-tRNA synthetase [Streptococcus pyogenes NZ131]
 gi|238065119|sp|B5XKA6|SYT_STRPZ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|209540192|gb|ACI60768.1| Threonyl-tRNA synthetase [Streptococcus pyogenes NZ131]
          Length = 647

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 164/449 (36%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F  TPE  +  + +    
Sbjct: 345 VRSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIFV-TPEQIQEEFQRALQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDF 239
            + ++    L     R                  D  +T  +  + +  +          
Sbjct: 404 IIDVYADFNLTDYRFRLS--------------YRDPNDTHKYYDNDEMWENAQSMLKAAL 449

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D++       E   A Y    D+   ++  +L   + +S   ++    F    ++     
Sbjct: 450 DEMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD---- 498

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             + GADG++H   M   G+ +       I             +          I   ++
Sbjct: 499 LKYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPHQV----TVIPISNE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 555 AHIDYAWEVAKILRDRGVRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +      S+E+ +          +RP
Sbjct: 615 RYGSKATHTESVEDFVENILADIARKSRP 643


>gi|301053905|ref|YP_003792116.1| threonyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300376074|gb|ADK04978.1| threonyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 639

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 155/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + +   +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEVFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G +   +   + P       E                   +    S       + 
Sbjct: 410 VYKTFGFEYE-VELSTRPEDSMGDDE-----------------LWEQAEASLENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYADEVADKLTQAGVRVERDMRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                 + L+  +       +N +
Sbjct: 616 EEKSGVIELDMFVESMKEEINNRK 639


>gi|260914069|ref|ZP_05920542.1| threonine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260631702|gb|EEX49880.1| threonine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 644

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 142/443 (32%), Gaps = 40/443 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LSEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 EYDYQEVKGPFMMDRVLWEKTGHWQNY-GDLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G ++I ++  + P     + E                   +            
Sbjct: 405 YDIYSTFGFENIQVKLSTRPEKRIGADE-----------------MWERAEAGLAAALAH 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L DSL    +     ++               +A+
Sbjct: 448 NGLEYEIQEGEGAFYGPKIEF---ALRDSLDREWQCGTIQLDFALPGRL--------NAS 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNDRRTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +K+   LS  G  V  D   E+IG +     L   P  ++ G K +   KV ++ 
Sbjct: 551 QSEYVQKVVKTLSDAGLRVKSDLRNEKIGFKIREHTLRRVPYMLVCGDKEIEAGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R        ++EE ++    +  
Sbjct: 611 RKGADLGTFTIEEFLDILKKQVR 633


>gi|261406470|ref|YP_003242711.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261282933|gb|ACX64904.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 636

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/434 (20%), Positives = 157/434 (36%), Gaps = 39/434 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L   M  + + G+  +LP G    + +    R  Q      E+  P
Sbjct: 239 AKKRDHRKLGKELGLF--MFSEEAPGMPFFLPNGMIIRNELEQFARGLQFHRDYDEVRTP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW  SG +D Y   M      ++      P +      ++++ + SYR LP   
Sbjct: 297 LMMNKRLWEMSGHWDHYKDNM-YFTQVDETEYALKPMNCPGHMLVYKNSLHSYRELPIRI 355

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +     R E      G+MR R F   DA+ F    +  +    ++     R++   G +
Sbjct: 356 SEFGQVHRHEFSGALNGMMRVRTFCQDDAHIFVRPDQIQEE-IKQVIDFISRVYQVFGFE 414

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  + P     S E    A+T   QV                  D +     I E 
Sbjct: 415 YTI-ELSTRPEDSMGSEELWEQAETSLQQVL-----------------DQLGLPYRINEG 456

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    D H   + DSL  + +     ++    F F  K+      ++ G D + H 
Sbjct: 457 DGAFYGPKIDFH---ILDSLKRSWQCGTIQLD----FQFPEKFD----LSYIGEDNQKHR 505

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +     +   I    +  G  +P  +AP ++ +I +  H     D   K+  R
Sbjct: 506 PVVIHRAV--FGSIERFIGILTEHYGGAFPMWLAPVQVMIIPVSDH---YIDYSLKVKKR 560

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G  V  D   E++G +   A LL  P  +++G K +    V ++ R  G   ++++
Sbjct: 561 LENAGIRVNVDVRNEKLGYKIREAGLLKTPYTLVLGEKEMDSDHVSVRKRGEGELGEIAI 620

Query: 432 EEVINYASHRFSNN 445
           ++VI    +   + 
Sbjct: 621 DQVIERLRNEIESK 634


>gi|206971420|ref|ZP_03232370.1| threonyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|228952703|ref|ZP_04114777.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229069894|ref|ZP_04203176.1| Threonyl-tRNA synthetase [Bacillus cereus F65185]
 gi|206733405|gb|EDZ50577.1| threonyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|228713297|gb|EEL65190.1| Threonyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228806979|gb|EEM53524.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 640

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 155/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 KYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TP+  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPKQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             + +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYANEIAHKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E ++L+  +        N +
Sbjct: 616 EEKSEVIALDVFVATIEEEIKNRK 639


>gi|84624684|ref|YP_452056.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|73919845|sp|Q5GXY0|SYT_XANOR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123725509|sp|Q2P0Z5|SYT_XANOM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84368624|dbj|BAE69782.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 634

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 138/438 (31%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 232 YILRMEEADKRDHRRIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIESEVTAFHQQALAV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P                           D    +  +       
Sbjct: 408 YTAFGFDDIQIKIALRPEKR-----------------LGDDATWDKAEAALRSALGVCGV 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L D++    ++    ++       G        A +  
Sbjct: 451 EWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 499

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   V     ++           D
Sbjct: 500 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSWLAPVQVVVANIT------DAQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R  
Sbjct: 554 YVDAVRKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSG 613

Query: 424 GIREDMSLEEVINYASHR 441
                M++   I      
Sbjct: 614 EDLGTMTVSAFIERLQAE 631


>gi|157150881|ref|YP_001450077.1| threonyl-tRNA synthetase [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189083628|sp|A8AWB7|SYT_STRGC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157075675|gb|ABV10358.1| threonyl-tRNA synthetase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 647

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 156/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEI 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 AAGYQHVYTPPLASVELYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  ++++E +       +N 
Sbjct: 619 GQKETHTVAVDEFVEAILADIANK 642


>gi|325917697|ref|ZP_08179888.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536091|gb|EGD07896.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 634

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 138/438 (31%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 232 YILRMEEADKRDHRRIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIEAEVTAFHQQALAV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P                           D    +  T       
Sbjct: 408 YTAFGFDDIEIKIALRPEKR-----------------LGDDGTWDKAEAALRTALGVCGV 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L D++    ++    ++       G        A +  
Sbjct: 451 EWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 499

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   V     ++           D
Sbjct: 500 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSWLAPVQVVVANIT------DAQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R  
Sbjct: 554 YVDSVRKTLANQGFRVNADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSG 613

Query: 424 GIREDMSLEEVINYASHR 441
                M++   +      
Sbjct: 614 EDLGTMTVSAFVERLQAE 631


>gi|325274563|ref|ZP_08140621.1| prolyl-tRNA synthetase [Pseudomonas sp. TJI-51]
 gi|324100290|gb|EGB98078.1| prolyl-tRNA synthetase [Pseudomonas sp. TJI-51]
          Length = 571

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHQRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNMYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGL   P++A++G IGG  SHEF VLA++GE  V  S    D+    E  
Sbjct: 181 YSNIFTRLGLDFRPVQADTGSIGGSYSHEFHVLAESGEDDVIFSDS-SDYAANIEKA 236



 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 74/207 (35%), Positives = 114/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  +
Sbjct: 364 DDKHYFGVNWERDLPVPQVADLRNVVEGDPSPDGQGTLIIKRGIEVGHIFQLGTKYSEAL 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVVLSMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 EAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E KHR     + + L EV+ +   R  
Sbjct: 544 EYKHRTEQDAQPLPLNEVLTFLQARVR 570


>gi|212711437|ref|ZP_03319565.1| hypothetical protein PROVALCAL_02510 [Providencia alcalifaciens DSM
           30120]
 gi|212685893|gb|EEB45421.1| hypothetical protein PROVALCAL_02510 [Providencia alcalifaciens DSM
           30120]
          Length = 653

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 140/443 (31%), Gaps = 40/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 243 YLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRTKLKSYN 300

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  +G +++Y   M       ++     P +      IF   +KSY
Sbjct: 301 YQEVKGPFMMDRVLWERTGHWENYKDAMFT-TSSENREYCVKPMNCPGHVQIFNQGLKSY 359

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +               +
Sbjct: 360 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEDQILGE-VTSCIEMIYDV 418

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P                      + D  D               
Sbjct: 419 YSTFGFEKIVVKLSTRPEKR-----------------IGTDDMWDTAEADLANALKSKGI 461

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F+   +    ++A++ G
Sbjct: 462 EFEYQPGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FFLPGR----LNASYVG 510

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +      +    +G++     ++   + G    W        +++           D
Sbjct: 511 ENNERITPVMIHRAVLGSLERFIGILTEEYAGFFPTWLAPQQVVVMNIT------DSQAD 564

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++ ++L  VG     D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 565 YVQELVSKLQSVGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGEKEVESGKVSVRTRRG 624

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                + + E          + +
Sbjct: 625 KDLGSLDVNEFTTKLLEEIRSRQ 647


>gi|47565742|ref|ZP_00236782.1| threonyl-tRNA synthetase [Bacillus cereus G9241]
 gi|47557378|gb|EAL15706.1| threonyl-tRNA synthetase [Bacillus cereus G9241]
          Length = 639

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 152/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ + K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDHKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMKQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G +   +   + P                           +    +       + 
Sbjct: 410 VYKIFGFQYE-VELSTRPEDS-----------------MGDDKLWEQAESALANVLHSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              ++I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYADEIADKLAQAGVRVERDVRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E + L   +        N +
Sbjct: 616 EEKSEVIELNGFVESIKEEIKNKK 639


>gi|85711636|ref|ZP_01042693.1| threonyl-tRNA synthetase [Idiomarina baltica OS145]
 gi|85694496|gb|EAQ32437.1| threonyl-tRNA synthetase [Idiomarina baltica OS145]
          Length = 638

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 148/448 (33%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD         L      + + G+  W   G      +   +RE+
Sbjct: 227 KQLKAYLQRLEEAEKRDHRKIGKAQDLF--HWQEEAPGMVFWHHNGWTIFRELEDFVREK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW +SG ++ +  +++      ++     P +      IF  
Sbjct: 285 LREYQYQEVKGPMMMDRVLWEKSGHWEKF-SDLMFTTSSENREYAVKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +        
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHVFC-TEDQVQDEVAACIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G   I ++  + P                           D    +     
Sbjct: 403 MVYETYETFGFDKIDVKLSTRPEKR-----------------LGDDATWDRSEKALADAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                  + +    A Y    +     LFD L    +     ++               +
Sbjct: 446 KAHDIDFTYLPGEGAFYGPKIEF---TLFDCLGRAWQCGTIQLDFALPGRL--------N 494

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+ G D   H    +    +G++     ++    +     +P  +AP ++ L+NI  + 
Sbjct: 495 ATYVGEDNDRHTPVMIHRAILGSLERFMGILI---EEYAGNFPLWLAPTQVVLMNITDN- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              RD   K+   L++ G     D   E+IG +     L   P  ++VG K V   +V +
Sbjct: 551 --QRDYVNKVVKSLNEKGIRASADLRNEKIGFKIREHTLKRVPYLLVVGDKEVEAGEVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R         LE+ +          +
Sbjct: 609 RTRSGEDLGKFPLEQFVEQLQAEVRTRK 636


>gi|324993844|gb|EGC25763.1| threonine--tRNA ligase [Streptococcus sanguinis SK405]
 gi|324994835|gb|EGC26748.1| threonine--tRNA ligase [Streptococcus sanguinis SK678]
 gi|325687276|gb|EGD29298.1| threonine--tRNA ligase [Streptococcus sanguinis SK72]
 gi|325696135|gb|EGD38026.1| threonine--tRNA ligase [Streptococcus sanguinis SK160]
 gi|327474719|gb|EGF20124.1| threonine--tRNA ligase [Streptococcus sanguinis SK408]
          Length = 647

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 151/445 (33%), Gaps = 32/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             KY     +   RD      +L L   MI  +  +G+  WLP G      +   I +++
Sbjct: 228 LKKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKE 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRS 120
             +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ 
Sbjct: 286 LASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKH 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SYR LP    +I +  R E       ++    +  +     +TPE  +  + +    
Sbjct: 346 HVHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R            +     D  E          +          D
Sbjct: 406 IIDVYADFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALD 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 453 EMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I   +         +     +    I   ++ 
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEA 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G     D+  E++  +   +     P Q+IVG K   D  V ++ 
Sbjct: 558 HIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEAEDGTVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                   + ++E +       ++ 
Sbjct: 618 YGQKETHTIPVDEFVEQILADIASK 642


>gi|117619295|ref|YP_858106.1| prolyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|152074744|sp|A0KPA5|SYP_AERHH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|117560702|gb|ABK37650.1| prolyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 574

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 121/235 (51%), Positives = 159/235 (67%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  +  I+REE
Sbjct: 1   MRTSQYLLSTLKETPSDAEIVSHQLMLRAGMIRKLASGMYAWLPSGLRVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q A+LW ESGR+D YG E+ RL DR+++  + GPTHEEV+T + R 
Sbjct: 61  MNNAGAIEVSMPVVQPAELWQESGRWDDYGPELCRLTDRHNRPFVLGPTHEEVITSLVRY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF +       +Y +M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHIDKASLIETYERMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y   F R+GL   P++A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 YCAAFTRMGLNFRPVQADTGSIGGTGSHEFQVLAESGEDLIAFSDT-SDYAANIE 234



 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 67/188 (35%), Positives = 108/188 (57%), Gaps = 3/188 (1%)

Query: 258 ATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D     + K +  RGIEVGHIF  GTKYS  M A+     GK   ++MG
Sbjct: 385 EVADLRNVVEGDPSPCGQGKLLLKRGIEVGHIFQLGTKYSEAMKASVLNEGGKSVTMEMG 444

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSK 374
            YGIG  R+VAA IE ++D  GIIWP+++APF+++++ +     +   +  ++ YA L  
Sbjct: 445 CYGIGVSRLVAAAIEQNNDQYGIIWPEAIAPFEVAIVPMNMHKSERVAEQAQQFYAELKA 504

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV +DD  E+ G  FA  +LLG P  +++G + + +  VE K R TG ++++++ E+
Sbjct: 505 AGVDVLFDDRKERPGVMFADMELLGVPHAIVIGDRGLDNGVVEYKCRRTGEKQEVAISEI 564

Query: 435 INYASHRF 442
           +     + 
Sbjct: 565 VALLKAKL 572


>gi|262282640|ref|ZP_06060408.1| threonyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
 gi|262261931|gb|EEY80629.1| threonyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
          Length = 647

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 156/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEI 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 AAGYQHVYTPPLASVELYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  ++++E +       +N 
Sbjct: 619 GQKETHTVAVDEFVEAILADIANK 642


>gi|146283154|ref|YP_001173307.1| prolyl-tRNA synthetase [Pseudomonas stutzeri A1501]
 gi|166980144|sp|A4VNB4|SYP_PSEU5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145571359|gb|ABP80465.1| prolyl-tRNA synthetase [Pseudomonas stutzeri A1501]
          Length = 571

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 123/237 (51%), Positives = 167/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DA + SH+LMLR GMI + + G+Y+W+P+G +AL    AI+REE
Sbjct: 1   MRTSQFLLSTLKETPSDAVVISHQLMLRAGMIRKLASGLYTWMPMGLRALRKAEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+D+    GPTHEEV+TD+ R+
Sbjct: 61  MNKAGALEVLMPAIQPAELWQESGRWEQYGPELLRLKDRHDREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REFLMKDAYSF L  E  + +Y++M  +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFHLNQESLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGL   P++A++G IGG  SHEF VLA++GE  +  S    D+    E  
Sbjct: 181 YCNIFTRLGLNFRPVQADTGSIGGTGSHEFHVLAESGEDDIAFSDS-SDYAANIEKA 236



 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/192 (38%), Positives = 116/192 (60%), Gaps = 4/192 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K   V  RGIEVGHIF  GTKYS  M+    G +GK   +
Sbjct: 378 PLPQVADLRNVVAGDPSPDGKGSLVIKRGIEVGHIFQLGTKYSEAMNCQVMGENGKPATL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE ++D +GI+WPD++APF+I+L+ +K   +  R+A +K+YA L
Sbjct: 438 IMGCYGIGVSRVVAAAIEQNYDERGILWPDALAPFQIALVPMKYETEAVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  +    G +FA  +L+G P +++V  + ++D  +E KHR     + ++
Sbjct: 498 TAAGYEVLLDDRDKKTSPGVKFADMELIGIPHRIVVSDRGLADGMLEYKHRRDAQPQQVA 557

Query: 431 LEEVINYASHRF 442
           + +++++ + R 
Sbjct: 558 VSDILSFINSRV 569


>gi|196040031|ref|ZP_03107334.1| threonine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|196029290|gb|EDX67894.1| threonine--tRNA ligase [Bacillus cereus NVH0597-99]
          Length = 639

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 155/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G K   +   + P                           +    S       + 
Sbjct: 410 VYKTFGFKYE-VELSTRPEDS-----------------MGDDKLWEQAEASLENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                 + L+  +       +N +
Sbjct: 616 EEKSGVIELDMFVESMKEEINNRK 639


>gi|82524022|emb|CAI78700.1| Threonyl-tRNA synthetase [uncultured Flavobacteriaceae bacterium]
          Length = 644

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 156/443 (35%), Gaps = 37/443 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L      +  +G+  WLP G    + +   +++ Q + G
Sbjct: 229 YLNLLEEAKKRDHRKLGKELELFA-FSKKVGQGLPLWLPKGAALRERLEDFLKKAQKKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +  P +   +L+V SG Y  YG +  +     + D+  +  P +     +I+ +   
Sbjct: 288 YEMVVTPHIGQKELYVTSGHYAKYGADSFQPIKTPKEDEEFLLKPMNCPHHCEIYNNSQW 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP  + +    +R E      G+ R R F   DA+ F +  +  +  +  +    L
Sbjct: 348 SYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFCMPEQLDQE-FKNVIDLVL 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  LG ++   +               V       +     +  +    +      D 
Sbjct: 407 YVFGSLGFENFTAQVS-------------VRDPENPDKYIGEVENWEKAEQAIINAAKDK 453

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                IVE   A Y    D     + D+L    ++    ++                 T+
Sbjct: 454 GLDFVIVEGEAAFYGPKLDFM---VKDALGRKWQLGTIQVDYNLP--------ERFDLTY 502

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           KG+D + H    +     G++    A++     G   +W        + +       +  
Sbjct: 503 KGSDNELHRPVMIHRAPFGSIERFIAILLEHTAGNFPLWLMPKQAIILCI------SEKY 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               EK+   L         D+  E IG +   A++  +P  +I+G    S++K+ ++  
Sbjct: 557 EKYAEKVLNLLENNEIRALVDNRNETIGKKIREAEMQKYPYMIIIGENEESENKISVRQH 616

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                  +S+E          S 
Sbjct: 617 GGEDLGLISIETFSEVIKSEISK 639


>gi|24379968|ref|NP_721923.1| threonyl-tRNA synthetase [Streptococcus mutans UA159]
 gi|73919830|sp|Q8DT12|SYT_STRMU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|24377953|gb|AAN59229.1|AE014990_3 putative threonyl-tRNA synthetase [Streptococcus mutans UA159]
          Length = 649

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 160/449 (35%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KSYLKRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRIIERYITDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSH 121
            +G   +  P + S DL+  SG +D Y ++M    D  D    +  P +     +++++H
Sbjct: 287 ASGYQHVYTPPIASVDLYKTSGHWDHYREDMFPTMDMGDGESFVLRPMNCPHHIEVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    ++ +  R E       ++    +  +     +  +  +  + +     
Sbjct: 347 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVEDEFKRTLQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFD 240
           + ++    L     R                  D  +T  +   D   +          D
Sbjct: 407 IDVYEDFNLTDYSFRLS--------------YRDPNDTHKYFDDDEMWEKSQTMLKAAMD 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+       E   A Y    D+   ++  +L  ++ +S   ++    F    ++      
Sbjct: 453 DMGLDYYEAEGEAAFYGPKLDI---QVKTALGNDETLSTIQLD----FLLPERF----EL 501

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ GADG++H    +    +  M    A +  ++ G    W             I   ++
Sbjct: 502 TYIGADGEEHRPVMIHRGIVSTMERFTAYLIETYKGAFPTWLAPHQVT-----VIPISNE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K V +  V ++
Sbjct: 557 AHIDYAWEVAKELRDHGIRADVDDRNEKMQYKIRQSQTKKVPYQLIVGDKEVENGTVNVR 616

Query: 420 HRLTGIREDMSLEEV-INYASHRFSNNRP 447
              +      S+ E   N  +     +RP
Sbjct: 617 RYGSKQTHTESIAEFRENILADIKRKSRP 645


>gi|332362439|gb|EGJ40239.1| threonine--tRNA ligase [Streptococcus sanguinis SK1056]
          Length = 654

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 152/445 (34%), Gaps = 32/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             KY     +   RD      +L L   MI  +  +G+  WLP G      +   I +++
Sbjct: 235 LKKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKE 292

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRS 120
             +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ 
Sbjct: 293 LASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKH 352

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SYR LP    +I +  R E       ++    +  +     +TPE  +  + +    
Sbjct: 353 HVHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQL 412

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R            +     D  E          +          D
Sbjct: 413 IIDVYADFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALD 459

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 460 EMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 508

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I   +         +     +    I   ++ 
Sbjct: 509 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEA 564

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++ 
Sbjct: 565 HIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVRR 624

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                   + ++E +       ++ 
Sbjct: 625 YGQKETHTIPVDEFVEQILADIASK 649


>gi|154687027|ref|YP_001422188.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens FZB42]
 gi|166223321|sp|A7Z7I1|SYT_BACA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|154352878|gb|ABS74957.1| ThrS [Bacillus amyloliquefaciens FZB42]
          Length = 643

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 159/432 (36%), Gaps = 32/432 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++   G 
Sbjct: 235 LRMLEEAKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKELSLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S DL+  SG +D Y   M    + +++ ++  P +      I++  I SYR
Sbjct: 294 EHVYTPVLGSKDLYETSGHWDHYQDTMFPPMEMDNETLVLRPMNCPHHMMIYKQDIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K  + +       ++ 
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEEFIRTVRLIQDVYE 413

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISL 245
             GL     R                  D  +T+ +   D M     S      D++   
Sbjct: 414 DFGLNDYTFRLS--------------YRDPEDTEKYFDDDEMWNKAQSMLKAAMDEMGHD 459

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G 
Sbjct: 460 YYEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYVGE 508

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DGK H   +     G +  +   +    +      P  +AP +  +I +     V  D  
Sbjct: 509 DGKQHRPVVIHR--GVVSTMERFVAFLIEEHKGALPTWLAPVQFQVIPVSP--SVHLDYA 564

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +K+  RL + G  V  D   E+IG +   A +   P  ++VG +   +  V ++      
Sbjct: 565 KKVQERLQREGLRVELDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKYGEQK 624

Query: 426 REDMSLEEVINY 437
            E +SL++ +  
Sbjct: 625 SETVSLDDFVKK 636


>gi|145297802|ref|YP_001140643.1| prolyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166980094|sp|A4SJ23|SYP_AERS4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|142850574|gb|ABO88895.1| prolyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 574

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 120/235 (51%), Positives = 159/235 (67%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  +  I+REE
Sbjct: 1   MRTSQYLLSTLKETPSDAEVVSHQLMLRAGMIRKLASGMYAWLPSGLRVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q A+LW ESGR+D YG E+ RL DR+++  + GPTHEEV+T + R 
Sbjct: 61  MNNAGAIEVSMPVVQPAELWQESGRWDDYGPELCRLTDRHNRPFVLGPTHEEVITSLVRY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF +       +Y +M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHIDKASLIETYERMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y   F R+GL   P++A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 YCAAFTRMGLNFRPVQADTGSIGGTGSHEFQVLAESGEDLIAFSDT-SDYAANIE 234



 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/188 (35%), Positives = 108/188 (57%), Gaps = 3/188 (1%)

Query: 258 ATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D     + K +  RGIEVGHIF  GTKYS  M A+     GK   ++MG
Sbjct: 385 EVADLRNVVEGDPSPCGQGKLLLKRGIEVGHIFQLGTKYSEAMKASVLNEGGKSVTMEMG 444

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSK 374
            YGIG  R+VAA IE ++D  GIIWPD++APF+++++ +     +   +  ++ YA L  
Sbjct: 445 CYGIGVSRLVAAAIEQNNDQYGIIWPDAIAPFEVAIVPMNMHKSERVAEQAQQFYAELKA 504

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV +DD  E+ G  FA  +LLG P  +++G + + +  VE K R +G ++++++ E+
Sbjct: 505 AGVDVLFDDRKERPGVMFADMELLGVPHAIVIGDRGLDNGVVEYKCRRSGEKQEVAITEI 564

Query: 435 INYASHRF 442
           +     + 
Sbjct: 565 VAMLKAKL 572


>gi|118477787|ref|YP_894938.1| threonyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|229184596|ref|ZP_04311798.1| Threonyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|118417012|gb|ABK85431.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Bacillus
           thuringiensis str. Al Hakam]
 gi|228598913|gb|EEK56531.1| Threonyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
          Length = 639

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 154/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    S       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEASLENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                 + L+  +        N +
Sbjct: 616 EEKSGVIELDMFVESMKEEIKNRK 639


>gi|332140465|ref|YP_004426203.1| prolyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
 gi|226731424|sp|B4RV73|SYP_ALTMD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|327550487|gb|AEA97205.1| prolyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 572

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 125/269 (46%), Positives = 170/269 (63%), Gaps = 9/269 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLATQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPSGLRVLNKVANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW ESGR++ YG E+LR+ DR+ +  + GPTHEEV+T + R+
Sbjct: 61  MNKAGAIEVLMPVVQPADLWEESGRWEEYGPELLRVKDRHQRDFVLGPTHEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q KFRDE+RPRFG+MR REF MKDAYSF L     + +Y KM+ +
Sbjct: 121 EISSYKQLPLNLYQVQTKFRDEVRPRFGIMRGREFTMKDAYSFHLEDSCLEETYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    + A+SG IGG+ SHEF VLA++GE  +  S D  D+    E     
Sbjct: 181 YCAIFSRMGLDFRAVIADSGSIGGNHSHEFHVLAESGEDAIAFSSD-SDYAANVEMAAA- 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                  +  +   P  A  +  + K  D
Sbjct: 239 -------VAPEKAVPSGADVETKDAKGKD 260



 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/186 (37%), Positives = 102/186 (54%), Gaps = 3/186 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T D+ N    D+ P+ +      RGIEVGHIF  G KYS  M+       GK   + MG 
Sbjct: 387 TVDIRNVVAGDASPDGQGTLDIKRGIEVGHIFQLGRKYSEAMNCGVLSETGKHQTLTMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKV 375
           YGIG  R+VAA IE +HD  GI WPD +APFKI+LI +        ++A E +Y  L  +
Sbjct: 447 YGIGVSRIVAAAIEQNHDKFGIKWPDPIAPFKIALIPMNMHKSHRIKEAAEALYEELVAL 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V +DD  E+ G  F   +L+G P  +++G + + + +VE K+R TG ++ + L    
Sbjct: 507 GIEVLFDDRKERPGVMFNDMELIGIPHSIVIGERNLDNQQVEYKNRRTGEKQLLDLSAAK 566

Query: 436 NYASHR 441
            + +  
Sbjct: 567 EFVAAL 572


>gi|78048351|ref|YP_364526.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325927169|ref|ZP_08188432.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           perforans 91-118]
 gi|123743902|sp|Q3BRT7|SYT_XANC5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78036781|emb|CAJ24474.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325542482|gb|EGD13961.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           perforans 91-118]
          Length = 634

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 138/438 (31%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 232 YILRMEEADKRDHRRIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIESEVTAFHQQALAV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P                           D    +  +       
Sbjct: 408 YTAFGFDDIQIKIALRPEKR-----------------LGDDATWDKAEAALRSALGVCGV 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L D++    ++    ++       G        A +  
Sbjct: 451 EWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 499

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   V     ++           +
Sbjct: 500 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSWLAPVQVVVANIT------DAQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R  
Sbjct: 554 YVDSVRKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSG 613

Query: 424 GIREDMSLEEVINYASHR 441
                M++   I      
Sbjct: 614 EDLGTMTVSAFIERLQAE 631


>gi|322411327|gb|EFY02235.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 647

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 157/448 (35%), Gaps = 36/448 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + D + F    +     + +    
Sbjct: 345 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIFVTPEQIRDE-FKRTLQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R            +     D  E          +          D
Sbjct: 404 IIDVYEDFNLTDYRFRLS-----YRDPEDTHKYYDNDEM--------WENAQAMLKGAMD 450

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 451 DMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 499

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I             +          I   ++ 
Sbjct: 500 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPHQV----TVIPISNEA 555

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   +I   L   G     DD  E++  +   +     P Q+IVG K + +  V ++ 
Sbjct: 556 HIDYAWEIAKTLRDRGVRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEEKSVNVRR 615

Query: 421 RLTGIREDMSLEEVINYASHRF-SNNRP 447
             +      S+E+ +          +RP
Sbjct: 616 YGSKATHTESVEDFVENILADIARKSRP 643


>gi|197284912|ref|YP_002150784.1| threonyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227355315|ref|ZP_03839716.1| threonyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
 gi|238693141|sp|B4ETK6|SYT_PROMH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194682399|emb|CAR42252.1| threonyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227164539|gb|EEI49410.1| threonyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
          Length = 642

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/447 (15%), Positives = 139/447 (31%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD      +L L    + + + G+  W   G      +   +R +
Sbjct: 227 KQLKAYLERLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRCK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW ++G +++Y + M       ++     P +      IF+ 
Sbjct: 285 LKEYDYQEVKGPFMMDRVLWEKTGHWENYKENMFT-TSSENREYCIKPMNCPGHVQIFKQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR+LP    +     R+E      G+MR R F   DA+ F    +      N    
Sbjct: 344 GLRSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQILSE-VNNCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G + I ++  + P                           D          
Sbjct: 403 LIYDVYSTFGFEKIVVKLSTRPEKR-----------------IGEDALWDIAETDLAKAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D            A Y    +     L+D L    +     ++       G        
Sbjct: 446 TDNNIEFEYQPGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFSLPGRLG-------- 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A++   + +    V +    +G++     ++   + G    W        +++       
Sbjct: 495 ASYVAENNERKVPVMLHRAVLGSLERFIGILTEEYAGFFPTWLAPQQVVVMNIT------ 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  +K+   L   G     D   E+IG +     L   P  ++ G K V   KV +
Sbjct: 549 DGQADYVQKLVKELQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       + + +          + 
Sbjct: 609 RTRRGKDLGSIDVNDFKEKLLQEIRSR 635


>gi|213161901|ref|ZP_03347611.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
          Length = 530

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 120 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 177

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 178 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 236

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 237 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDE-VNACIRMVYDM 295

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 296 YSTFGFEKIVVKLSTRPDKRIGSDE-----------------MWDRAEADLAVALEENNI 338

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 339 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 387

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +    V +    +G+M     ++     G    W   V    +++           +
Sbjct: 388 EDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSE 441

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 442 YVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRG 501

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + +VI        + 
Sbjct: 502 KDLGSLDVNDVIEKLQQEIRSR 523


>gi|229044114|ref|ZP_04191800.1| Threonyl-tRNA synthetase [Bacillus cereus AH676]
 gi|229109806|ref|ZP_04239391.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228673651|gb|EEL28910.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228725227|gb|EEL76498.1| Threonyl-tRNA synthetase [Bacillus cereus AH676]
          Length = 640

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 157/444 (35%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEATKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TP+  ++    +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPKQIENEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             + +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYANEIALKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E ++L+  +        N +
Sbjct: 616 EEKSEVIALDVFVATIEEEIKNRK 639


>gi|327490276|gb|EGF22064.1| threonine--tRNA ligase [Streptococcus sanguinis SK1058]
          Length = 647

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 152/445 (34%), Gaps = 32/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             KY     +   RD      +L L   MI  +  +G+  WLP G      +   I +++
Sbjct: 228 LKKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKE 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRS 120
             +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ 
Sbjct: 286 LASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKH 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SYR LP    +I +  R E       ++    +  +     +TPE  +  + +    
Sbjct: 346 HVHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R            +     D  E          +          D
Sbjct: 406 IIDVYADFNLTEYRFRLSLRD-----PQDTHKYYDNDEM--------WENAQTMLRAALD 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 453 EMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I   +         +     +    I   ++ 
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEA 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++ 
Sbjct: 558 HIDYAWQMAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                   + ++E +       +N 
Sbjct: 618 YGQKETHTIPVDEFVEQILADIANK 642


>gi|306829065|ref|ZP_07462255.1| threonine--tRNA ligase [Streptococcus mitis ATCC 6249]
 gi|304428151|gb|EFM31241.1| threonine--tRNA ligase [Streptococcus mitis ATCC 6249]
          Length = 647

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 158/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDCGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S+++ +       +N 
Sbjct: 619 GQKETQTVSVDDFVQAILADIANK 642


>gi|329927796|ref|ZP_08281857.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328938197|gb|EGG34592.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 636

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/434 (19%), Positives = 157/434 (36%), Gaps = 39/434 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L   M  + + G+  +LP G    + +    R  Q      E+  P
Sbjct: 239 AKKRDHRKLGKELGLF--MFSEEAPGMPFFLPNGMIIRNELEQFARGLQFHRDYDEVRTP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW  SG +D Y   M      ++      P +      ++++ + SYR LP   
Sbjct: 297 LMMNKRLWEMSGHWDHYKDNM-YFTQVDETEYALKPMNCPGHMLVYKNSLHSYRELPIRI 355

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +     R E      G+MR R F   DA+ F    +  +    ++     +++   G +
Sbjct: 356 SEFGQVHRHEFSGALNGMMRVRTFCQDDAHIFVRPDQIQEE-IKQVIDFISQVYQVFGFE 414

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  + P     S E    A++   QV                  D +     I E 
Sbjct: 415 YTI-ELSTRPEDSMGSEELWEQAESSLQQVL-----------------DQMGLPYRINEG 456

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    D H   + DSL  + +     ++    F F  K+      ++ G D + H 
Sbjct: 457 DGAFYGPKIDFH---ILDSLKRSWQCGTIQLD----FQFPEKFD----LSYIGEDNQKHR 505

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +     +   I    +  G  +P  +AP ++ +I +  H     D   K+  R
Sbjct: 506 PVVIHRAV--FGSIERFIGILTEHYGGAFPMWLAPVQVMIIPVSDH---YIDYSLKVKKR 560

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G  V  D   E++G +   A LL  P  +++G K +    V ++ R  G   ++++
Sbjct: 561 LENAGIRVNVDVRNEKLGYKIREAGLLKTPYTLVLGEKEMDSDHVSVRKRGEGELGEIAI 620

Query: 432 EEVINYASHRFSNN 445
           ++VI    +   + 
Sbjct: 621 DQVIERLRNEIESK 634


>gi|327481520|gb|AEA84830.1| prolyl-tRNA synthetase [Pseudomonas stutzeri DSM 4166]
          Length = 571

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 130/279 (46%), Positives = 179/279 (64%), Gaps = 20/279 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DA + SH+LMLR GMI + + G+Y+W+P+G +AL    AI+REE
Sbjct: 1   MRTSQFLLSTLKETPSDAVVISHQLMLRAGMIRKLASGLYTWMPMGLRALRKAEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+D+    GPTHEEV+TD+ R+
Sbjct: 61  MNKAGALEVLMPAIQPAELWQESGRWEQYGPELLRLKDRHDREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REFLMKDAYSF L+ E  + +Y++M  +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFHLSQESLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN---- 236
           Y  IF RLGL   P++A++G IGG  SHEF VLA++GE  +  S    D+    E     
Sbjct: 181 YCNIFTRLGLNFRPVQADTGSIGGTGSHEFHVLAESGEDDIAFSDS-SDYAANIEKAEAI 239

Query: 237 ---------------TDFDDIISLNSIVEQWTAPYAATS 260
                           D  D  ++  +VEQ+  P   T 
Sbjct: 240 PRETERAAPGEELRLIDTPDAKTIAELVEQFGLPVERTV 278



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 74/191 (38%), Positives = 115/191 (60%), Gaps = 4/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K   V  RGIEVGHIF  GTKYS  M+    G +GK   +
Sbjct: 378 PLPQVADLRNVVAGDPSPDGKGSLVIKRGIEVGHIFQLGTKYSEAMNCQVMGENGKPATL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE ++D +GI+WPD++APF+I+L+ +K   +  R+A +K+YA L
Sbjct: 438 IMGCYGIGVSRVVAAAIEQNYDERGILWPDALAPFQIALVPMKYETEAVREATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  +    G +FA  +L+G P +++V  + ++D  +E KHR     + ++
Sbjct: 498 TAAGYEVLLDDRDKKTSPGVKFADMELIGIPHRIVVSDRGLADGMLEYKHRRDAQPQPVA 557

Query: 431 LEEVINYASHR 441
             E++++ + R
Sbjct: 558 ASEILSFINSR 568


>gi|257124962|ref|YP_003163076.1| threonyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
 gi|257048901|gb|ACV38085.1| threonyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
          Length = 636

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 163/440 (37%), Gaps = 44/440 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + +H  G   ++P G +  + +  I R E  + G
Sbjct: 230 YLTMMEEAEKRDHRKLGKQLDLF--FVDEHGPGFPFFMPKGVELFNKLQEIWRVEHKKRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +   +LW  SG + +Y + M      ++K     P +       +++++ SY
Sbjct: 288 YQEIKTPIMLDKELWEISGHWFNYRENMYTST-IDEKEYAIKPMNCPGSIIAYKNNLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP  + ++ L  R E      G+MR R F   DA+ F  T E  +    ++   Y + 
Sbjct: 347 KDLPLKYGEMGLVHRHEFSGALHGLMRVRAFTQDDAHVFC-TKEQIEEQIIEIIDLYDKF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G                   E+ +   T   +   S +  +    +  +  +    
Sbjct: 406 YTVFG------------------FEYHIELSTKPDKAIGSDEIWEMAEANLKSALEHKGI 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    D    K+ DS+    +     ++    F    ++      ++ G
Sbjct: 448 NYKLNPGDGAFYGPKIDF---KMKDSIGRIWQCGTIQLD----FNLPARF----EMSYIG 496

Query: 305 ADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           ADG+ H   M    +     R +  +IE              A                 
Sbjct: 497 ADGEKHEPVMIHRAMYGSLERFIGILIEHYAGAFPTWLAPVQARILTI-------SDEQV 549

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHR 421
              ++++ +L   G  V  D   E+IG +   A+ +   P+Q+I+G   V++++V ++  
Sbjct: 550 PFAKELFIKLQDAGIRVELDTRVEKIGYKIREANGVQKIPVQLIIGKNEVANNEVNVRRF 609

Query: 422 LTGIREDMSLEEVINYASHR 441
            +   +++S++E+I      
Sbjct: 610 GSQDSKNVSVDEIIETLKQE 629


>gi|315612715|ref|ZP_07887626.1| threonine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
 gi|315314825|gb|EFU62866.1| threonine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
          Length = 647

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 158/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDCGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S+++ +       +N 
Sbjct: 619 GQKETQTVSVDDFVQAILADIANK 642


>gi|228939521|ref|ZP_04102109.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228972374|ref|ZP_04132985.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978988|ref|ZP_04139352.1| Threonyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228780699|gb|EEM28913.1| Threonyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228787391|gb|EEM35359.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820221|gb|EEM66258.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326940068|gb|AEA15964.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 640

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 156/444 (35%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W +SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWEKSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TP+  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPKQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             +        +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DENNDKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYANEITLKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E ++L+  +        N +
Sbjct: 616 EEKSEVVALDVFVASIEEEIKNRK 639


>gi|218782046|ref|YP_002433364.1| threonyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
 gi|226701455|sp|B8FN26|SYT_DESAA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|218763430|gb|ACL05896.1| Threonyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
          Length = 636

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 157/448 (35%), Gaps = 42/448 (9%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD       L L +   H+ + G+  +   G +  + + A  REE  +
Sbjct: 225 KSYLHLLEEAKKRDHRKLGTALDLFS--FHEEAAGMPFFHARGMELWNALLAYWREEHKK 282

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E   P + +  LW  SG +++Y + M       D      P +      ++++   
Sbjct: 283 AGYVETKTPIMLNKSLWERSGHWENYRENMYTSL-IEDFDYAIKPMNCPGGMLLYKTKHH 341

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY +LP    +I L  R EL     G+ R R F   DA+ F      ++       +  L
Sbjct: 342 SYNDLPIRAGEIGLVHRHELSGVLSGLFRVRAFHQDDAHIF-----MTEEMIEDEILGVL 396

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           ++  R+                     F +   T   +   + +  +          D  
Sbjct: 397 QLVERMYSTFGLG--------------FHLELSTRPEKTIGTDEQWEKATEGLRAALDKS 442

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A Y    D+H   + D+L    +     +++                T+
Sbjct: 443 GRDYKINEGDGAFYGPKIDIH---IKDALGRTWQCGTIQLDMNLP--------ERFDLTY 491

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GAD + H    +     G++     ++   + GK  +W             + A +   
Sbjct: 492 VGADNQRHRPVMIHRVIYGSIERFLGILIEHYAGKFPLW------LSPCQAVVLAMNDDV 545

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +++ ARL + G  +  D   E I  +   A L   PL + VG K  +   + ++  
Sbjct: 546 AGYAKEVKARLEEAGLRMEIDLRAESINKKVRDAQLSKIPLMLTVGGKEEAAQTLAVRTL 605

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
              ++  ++++  ++          P L
Sbjct: 606 DGKVKYGVTIDNFLDKVLPHIETRNPDL 633


>gi|319946565|ref|ZP_08020800.1| threonine--tRNA ligase [Streptococcus australis ATCC 700641]
 gi|319747311|gb|EFV99569.1| threonine--tRNA ligase [Streptococcus australis ATCC 700641]
          Length = 647

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 157/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYGDFNLNEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  +S++E +       +N 
Sbjct: 619 GQKETNTVSVDEFVAAILADIANK 642


>gi|26987940|ref|NP_743365.1| prolyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|81840777|sp|Q88NK2|SYP_PSEPK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|24982651|gb|AAN66829.1|AE016311_9 prolyl-tRNA synthetase [Pseudomonas putida KT2440]
          Length = 571

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 117/237 (49%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHQRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  +F RLGL   P++A++G IGG  SHEF VLA++GE  V  S    D+    E  
Sbjct: 181 YSNVFTRLGLDFRPVQADTGSIGGSYSHEFHVLAESGEDDVIFSDS-SDYAANIEKA 236



 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 114/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  +
Sbjct: 364 DDKHYFGVNWERDLPVPQVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEAL 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVVLSMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            V R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DVVREATDKLYAELTAAGYEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E KHR     + + L EV+ +   R  
Sbjct: 544 EYKHRTEQDAQALPLNEVLTFLQARVR 570


>gi|94989937|ref|YP_598037.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
 gi|123258050|sp|Q1JI30|SYT_STRPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94543445|gb|ABF33493.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
          Length = 647

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/449 (19%), Positives = 164/449 (36%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F  TPE  +  + +    
Sbjct: 345 VRSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIFV-TPEQIQEEFQRALQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDF 239
            + ++    L     R                  D  +T  +  + +  +          
Sbjct: 404 IIDVYADFNLTDYRFRLS--------------YRDPNDTHKYYDNDEMWENAQSMLKAAL 449

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D++       E   A Y    D+   ++  +L   + +S   ++    F    ++     
Sbjct: 450 DEMDVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD---- 498

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             + GADG++H   M   G+ +       I             +          I   ++
Sbjct: 499 LKYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPHQV----TVIPISNE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 555 AHIDYAWEVAKTLRDRGVRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +      S+EE +          +RP
Sbjct: 615 RYGSKATHTESVEEFVENILADIARKSRP 643


>gi|148546477|ref|YP_001266579.1| prolyl-tRNA synthetase [Pseudomonas putida F1]
 gi|166980143|sp|A5VZT5|SYP_PSEP1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148510535|gb|ABQ77395.1| prolyl-tRNA synthetase [Pseudomonas putida F1]
          Length = 571

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 117/237 (49%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHQRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  +F RLGL   P++A++G IGG  SHEF VLA++GE  V  S    D+    E  
Sbjct: 181 YSNVFTRLGLDFRPVQADTGSIGGSYSHEFHVLAESGEDDVIFSDS-SDYAANIEKA 236



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 115/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  +
Sbjct: 364 DDKHYFGVNWERDLPVPQVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEAL 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVVLSMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +V R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 EVVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E KHR     + + L EV+ +   R  
Sbjct: 544 EYKHRTEQDAQALPLNEVLTFLQARVR 570


>gi|303233025|ref|ZP_07319704.1| threonine--tRNA ligase [Atopobium vaginae PB189-T1-4]
 gi|302480896|gb|EFL43977.1| threonine--tRNA ligase [Atopobium vaginae PB189-T1-4]
          Length = 589

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/438 (18%), Positives = 157/438 (35%), Gaps = 43/438 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      ++ L   M+++   G   WLP G +  + +    +E Q++ G  ++  
Sbjct: 190 EAEKRDHRKIGKEMDLF--MLNEAGPGFPFWLPNGMRIRNELMKYWQEMQDQYGYEQIQT 247

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + S  LW  SG +D Y + M      +D+     P +      ++ S  +SYR+LP  
Sbjct: 248 PIILSRKLWETSGHWDHYKENMYT-TVIDDEDFAIKPMNCPGACLVYMSKPRSYRDLPLK 306

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             +  L  R EL+    G+ R REF   DA+ F    +       ++       + + G 
Sbjct: 307 LAEAGLDHRHELKGTLHGLFRVREFTQDDAHLFIRPDQICDE-VREVTELISAYYKQFGF 365

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +   + P     S E    A+ G                      + +    +I E
Sbjct: 366 PY-KVELSTRPENSMGSDEDWATAEAG-----------------LRDALETMGLDYTINE 407

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D H   L D L    +     ++      F        +  +  +DG+  
Sbjct: 408 GDGAFYGPKIDFH---LKDCLGRTWQCGTIQLDFQFPHNF--------NLEYVDSDGQKK 456

Query: 311 YV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +   G G+      ++   ++GK  +W   +    + +       +  RD   ++ 
Sbjct: 457 RPIMIHRAGFGSFERFIGMLIEQYEGKFPVWLAPLQVKVLPV------SEKTRDYARELT 510

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L K+   V  DD  E+IG +   A  +   P  +IVG +      + ++ R +     
Sbjct: 511 QKLLKLKIRVKLDDRDEKIGYKIREARSIDRVPYMLIVGEQEAQAGNISVRDR-SNTTTQ 569

Query: 429 MSLEEVINYASHRFSNNR 446
            + ++ +     + +  +
Sbjct: 570 YAFDDFVALLQRQIAARK 587


>gi|71903081|ref|YP_279884.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
 gi|123734122|sp|Q48US7|SYT_STRPM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71802176|gb|AAX71529.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
          Length = 647

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 163/444 (36%), Gaps = 37/444 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F  TPE  +  + +    
Sbjct: 345 VRSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIFV-TPEQIQEEFQRALQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDF 239
            + ++    L     R                  D  +T+ +  + +  +          
Sbjct: 404 IIDVYADFNLTDYRFRLS--------------YRDPNDTRKYYDNDEMWENAQSMLKAAL 449

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D++       E   A Y    D+   ++  +L   + +S   ++    F    ++     
Sbjct: 450 DEMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD---- 498

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             + GADG++H   M   G+ +       I             +          I   ++
Sbjct: 499 LKYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPHQV----TVIPISNE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 555 AHIDYAWEVAKTLRDRGVRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
              +      S+EE +       +
Sbjct: 615 RYGSKATHTESVEEFVENILADIA 638


>gi|198283898|ref|YP_002220219.1| prolyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666412|ref|YP_002426532.1| prolyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|226731419|sp|B7J4Y9|SYP_ACIF2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226731420|sp|B5EKH7|SYP_ACIF5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|198248419|gb|ACH84012.1| prolyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518625|gb|ACK79211.1| prolyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 570

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P L+E P +AE+ SH+L+LR G I + + G+Y+W+PLG + L  V  ++REE
Sbjct: 1   MRASQIFIPTLKETPAEAELVSHQLLLRGGFIRRLASGLYTWMPLGLRVLRKVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +P +Q A+LW ESGR++ YG E+LRL DR+D+    GPTHEEV++D+ R 
Sbjct: 61  MDRSGAQELLMPVVQPAELWQESGRWEQYGPELLRLRDRHDREFCLGPTHEEVISDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSF +     + +Y  M+ +
Sbjct: 121 EIHSYRQLPVNFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHMDHSSLEITYQAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y R+F RLGL    + A++G IGG  SHEF VLAD+GE  +       D+    E  
Sbjct: 181 YQRVFTRLGLSFRAVEADNGAIGGKRSHEFHVLADSGEDAIVSCHHC-DYAANMEKA 236



 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/191 (34%), Positives = 96/191 (50%), Gaps = 4/191 (2%)

Query: 255 PYAATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           P  A +D+ N +  D+ P   E      RGIEVGH+F  G +YS  M  T     G+D  
Sbjct: 376 PRPAAADLRNVRAGDACPHCAEGTLSIRRGIEVGHVFQLGERYSESMGITVLDETGRDAT 435

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYA 370
           V MG YGIG  RVVAA +E   D +GIIWP ++APF++ ++ I A        A + ++ 
Sbjct: 436 VTMGCYGIGVSRVVAAAVEQHFDDRGIIWPVALAPFEVGIVAINARKSPDVAAAAQALHD 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           RL   G  V  DD  E+ G QFA  DL+G P +++V    ++    E + R T     + 
Sbjct: 496 RLEAEGYSVLLDDRDERPGVQFATMDLVGLPHRIVVSDTVLAQGVWEYRARRTTENVLLD 555

Query: 431 LEEVINYASHR 441
             +++      
Sbjct: 556 ETQLMERLRKE 566


>gi|327398462|ref|YP_004339331.1| threonyl-tRNA synthetase [Hippea maritima DSM 10411]
 gi|327181091|gb|AEA33272.1| threonyl-tRNA synthetase [Hippea maritima DSM 10411]
          Length = 620

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 161/443 (36%), Gaps = 41/443 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      +L L + +  +   G+  W P G      +    R+E  + G
Sbjct: 216 YLKFLEEVKKRDHRKLGKQLDLFS-INDEVGPGLIIWHPKGAMLRYLIEEFERKEHLKRG 274

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +    LW  SG +D Y + M    + +D++    P +      +++S  +SY
Sbjct: 275 YEFVKGPEILRTQLWKRSGHFDHYRENM-YFTEIDDQSFGIKPMNCLGHIQVYKSKKRSY 333

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  ++++ +  R E      G++R REF   DA+ F    + +      +      +
Sbjct: 334 RELPKRYFELGVVHRHEKSGVLHGLLRVREFTQDDAHIFCRPDQLNDE-IIGVLNFVQDV 392

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G                   E+ +   T       +    +    +      +   
Sbjct: 393 MDIFG------------------FEYELEISTRPENSIGTDQQWELATNALINALKNTGR 434

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    DV   KL D+L    + +    +    F    ++      T+  
Sbjct: 435 EYDINEGDGAFYGPKIDV---KLKDALGRKWQCATIQCD----FTLPERFD----LTYVD 483

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGK+     +    +G++    A++    +     +P  +AP ++ ++ +    +    
Sbjct: 484 EDGKEKQPVMVHRVILGSIERFIAILI---ENYEGDFPVWIAPVQVRVLPVSEKHE---A 537

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y  L   G  V  ++  E +G +   A+    P  V+VG K + D  + ++ R  
Sbjct: 538 YAKDVYQTLKDRGIRVEIEERNETLGKKIRFAETDKVPYVVVVGDKEIEDKTISVRKRKE 597

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
           G    M+++  I        + R
Sbjct: 598 GDLGCMNIDGFIERLQKEIDSRR 620


>gi|222056447|ref|YP_002538809.1| threonyl-tRNA synthetase [Geobacter sp. FRC-32]
 gi|221565736|gb|ACM21708.1| threonyl-tRNA synthetase [Geobacter sp. FRC-32]
          Length = 645

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/440 (18%), Positives = 148/440 (33%), Gaps = 40/440 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  W P G      +    R E  +  
Sbjct: 241 YLARIEEAKRRDHRKLGKELDLFS-FSDEVGAGLVIWHPKGAMLRTIIEDFERREHLKRD 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DLW  SG YD+Y + M    + ++++    P +      I++S ++SY
Sbjct: 300 YDIVVGPQILKTDLWQRSGHYDNYRENM-YFTEVDEQSFGIKPMNCLSHMMIYKSRLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP   +++    R E      G++R R F   DA+      +             +  
Sbjct: 359 RDLPLRLFELGTVHRHERAGVLHGLLRVRCFTQDDAHILCTPEQLDSE-----IKGVISF 413

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                            + G    EF +   T   +   S +  D    +      D   
Sbjct: 414 VQD--------------VMGVFGFEFEMELSTRPEKSIGSDEDWDRATNALLGALKDSGR 459

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   KL DSL    + +    +    F    ++      T+  
Sbjct: 460 PFEINEGDGAFYGPKIDI---KLRDSLDRRWQCATIQCD----FTLPERFD----LTYID 508

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+      +    +G++     V+     G   +W   V    +++            
Sbjct: 509 ADGEKKRPVMVHRVILGSIERFIGVLIEHFAGSFPVWLSPVQVVVLTVT------DNQLS 562

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++YA L   G  V  D   E++G +   A L   P  +++G K V    V  + R  
Sbjct: 563 FAQQVYAELRAAGLRVQQDFRNEKLGFKIREAQLQKIPYMLVIGDKEVEAGMVTPRFRDG 622

Query: 424 GIREDMSLEEVINYASHRFS 443
              + M   + I +      
Sbjct: 623 KNLDSMKCSDFIEFIEKEVK 642


>gi|218231087|ref|YP_002367070.1| threonyl-tRNA synthetase [Bacillus cereus B4264]
 gi|218159044|gb|ACK59036.1| threonine--tRNA ligase [Bacillus cereus B4264]
          Length = 640

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 155/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 KYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TP+  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPKQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             + +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYANEIAHKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E ++L+  +        N +
Sbjct: 616 EEKSEVIALDVFVASIEEEIKNRK 639


>gi|77360339|ref|YP_339914.1| threonyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875250|emb|CAI86471.1| threonyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
          Length = 636

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/448 (16%), Positives = 142/448 (31%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L      + + G+  W   G      +   +RE+
Sbjct: 227 KQLKAYLKRLEEAEKRDHRRIGKALDL--WHWQEEAPGMVFWHNDGWSIYRELEDFVREK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW +SG ++ Y   M        +     P +      IF  
Sbjct: 285 LREYDYEEVKGPMMMDRSLWEKSGHWEKYADAMFT-TVSEKREYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +      +    
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIMDE-VSACIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G + I ++  + P                           D    +     
Sbjct: 403 MVYDTYETFGFEKIVVKLSTRPEQR-----------------IGEDHMWDKAELALAEAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                    +    A Y    +     L+D L    +     ++       G        
Sbjct: 446 KLNEIEFDYLPGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFALPGRLG-------- 494

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+   + +      +    +G++     ++   + G    W        +++       
Sbjct: 495 ATYVAENNERRTPVMIHRAILGSIERFIGILTEEYAGLFPTWLAPKQVVIMNIT------ 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  +++  +L+K+G     D   E+IG +     L   P  ++VG K V   +V +
Sbjct: 549 DKQADYVKEVVQKLNKLGIRATADLRNEKIGFKIREHTLKRIPYLLVVGDKEVEQQEVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R        ++++ +   S    + +
Sbjct: 609 RTRTGEDLGKFNVDDFVAKISEEIKSRQ 636


>gi|296502926|ref|YP_003664626.1| threonyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|296323978|gb|ADH06906.1| threonyl-tRNA synthetase [Bacillus thuringiensis BMB171]
          Length = 640

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 156/444 (35%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TP+  ++    +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPKQIENEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             + +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYANEIALKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E ++L+  +        N +
Sbjct: 616 EEKSEVIALDVFVATIEEEIKNRK 639


>gi|24373852|ref|NP_717895.1| threonyl-tRNA synthetase [Shewanella oneidensis MR-1]
 gi|73919825|sp|Q8EER9|SYT_SHEON RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|24348259|gb|AAN55339.1|AE015671_6 threonyl-tRNA synthetase [Shewanella oneidensis MR-1]
          Length = 642

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 143/443 (32%), Gaps = 40/443 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S Y   + +   RD      +L L    + + + G+  W   G      +   IR + N
Sbjct: 229 LSTYLARLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELERFIRRKLN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW  SG +D Y + M       ++     P +      IF   +
Sbjct: 287 QYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFT-TSSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +   +      
Sbjct: 346 KSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQVQAEVSSCIQMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G ++I ++  + P                           D    +       
Sbjct: 405 YDTYSTFGFENIVVKLSTRPEKR-----------------IGDDAMWDRAEEALKQALRA 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +I+    A Y    +     L D L    +     ++       G        AT
Sbjct: 448 NNIEFTILPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPSRLG--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     ++   + G+   W   +    +++         
Sbjct: 497 YVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGRFPTWLAPMQVVVMNIT------DK 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  E++     + G    +D   E+IG +     L   P  ++VG + + + +V ++ 
Sbjct: 551 QADYVEEVVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R       M +E+       + S
Sbjct: 611 RDGVDLGKMRIEDFAAKIHQQIS 633


>gi|325288434|ref|YP_004264615.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963835|gb|ADY54614.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 636

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 151/443 (34%), Gaps = 41/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   + +   RD      +L L +  +H    G   + P G    + +    R+E  + G
Sbjct: 231 FLFKLEEAKRRDHRKLGMELDLFS--LHDEGPGFPFFHPKGMVIRNLLEDFWRKEHFKRG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P + +  LW +SG +D Y + M      +       P +      ++++ ++SY
Sbjct: 289 YVEIKTPIILNRALWEQSGHWDHYKENM-YFTKIDGVDFAVKPMNCPGGMIMYKTKLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G++R R F   DA+ F L P   K    ++       
Sbjct: 348 RDLPIRCGELGLVHRHELSGALHGLLRVRNFTQDDAHIFML-PSQIKDEIIRVINLVDDF 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G                   E+ V   T       S +  +    +     + +  
Sbjct: 407 YKVFG------------------FEYHVEVSTRPENSMGSDEEWEMATRALTEALEALNM 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    D H +   D          R  + G I     +        + G
Sbjct: 449 SYKVNPGDGAFYGPKIDFHLKDCLD----------RTWQCGTI-QLDFQMPEKFDLNYIG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++    A++    +     +P  +AP ++ ++ I        +
Sbjct: 498 EDGEKHRPVMIHRVVYGSIERFIALLT---EHYAGAFPVWLAPVQVRILPISDKHS---E 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L ++      D+  E+I  +   A     P  ++VG +   +  + ++    
Sbjct: 552 YAAKVAETLKEMDIRTEIDERREKISYKVREAQTEKVPFALVVGDQEAEEGSLAVRRYGE 611

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                MS EE +          +
Sbjct: 612 QNTVKMSREEFLATIIEEIQTKK 634


>gi|238753686|ref|ZP_04615048.1| Threonyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
 gi|238708238|gb|EEQ00594.1| Threonyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
          Length = 642

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 146/447 (32%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++   +L  L+E   RD      +L L    + + + G+  W   G      +   +R +
Sbjct: 227 KQLNAYLQRLEEAGKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRSK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW ++G +++Y + M       ++     P +      IF  
Sbjct: 285 LKEYQYQEVKGPFMMDRVLWEKTGHWENYAEHMFT-TSSENREYCIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +      N    
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHVFCTEEQVRDE-VNSCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G + I ++  + P     S E    A+                        
Sbjct: 403 MVYDMYSTFGFEKIVVKLSTRPEKRIGSDELWTRAED-----------------DLAAAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +            A Y    +     L D L    +     ++    F    + S    
Sbjct: 446 TENGIPFDYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS---- 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A++ G +      V +    +G+M     ++   + G    W   V    +++       
Sbjct: 495 ASYIGENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTWIAPVQVVVMNIT------ 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  +++  +L   G  V  D   E+IG +     L   P  ++ G K +   KV +
Sbjct: 549 DSQAEYVQEVTKKLQDAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEIETGKVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       + +  V++       + 
Sbjct: 609 RTRRGKDLGSLDVNVVVDKLLTEIRSR 635


>gi|296390688|ref|ZP_06880163.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa PAb1]
          Length = 571

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 120/237 (50%), Positives = 167/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DA + SH+L+LR GMI + + G+Y+WLP+G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAVVISHQLLLRAGMIRRLASGLYTWLPMGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPAVQPAELWQESGRWEQYGPELLRLKDRHEREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSF L+ +  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHLSQDSLQQTYDGMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y +IF RLGL   P++A++G IGG  SHEF VLA++GE  +  S    D+    E  
Sbjct: 181 YSKIFSRLGLDFRPVQADNGSIGGSGSHEFHVLANSGEDDIVFSDS-SDYAANIEKA 236



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/193 (35%), Positives = 111/193 (57%), Gaps = 4/193 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K   V  RGIEVGHIF  GTKYS  M        GK   +
Sbjct: 378 PLPEVADLRNVVEGDPSPDGKGTLVIKRGIEVGHIFQLGTKYSEAMKLNVLSEQGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE +HD +GI+WP ++APF+I+L+ +K   +  + A +K+YA L
Sbjct: 438 IMGCYGIGVSRVVAAAIEQNHDERGILWPSALAPFQIALVPLKYETESVKQATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  +    G +FA  +L+G P ++++  + +++  +E K R     +++ 
Sbjct: 498 TAAGFEVLLDDRDKKTSPGVKFADMELIGIPHRIVISDRGLNEGVLEYKGRRDSESQNLP 557

Query: 431 LEEVINYASHRFS 443
           + E++++ + + S
Sbjct: 558 IGELMSFITEKLS 570


>gi|15596153|ref|NP_249647.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|107100413|ref|ZP_01364331.1| hypothetical protein PaerPA_01001438 [Pseudomonas aeruginosa PACS2]
 gi|218893073|ref|YP_002441942.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
 gi|81857350|sp|Q9I502|SYP_PSEAE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701320|sp|B7UXX6|SYP_PSEA8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|9946862|gb|AAG04345.1|AE004529_11 prolyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|218773301|emb|CAW29113.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
          Length = 571

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 120/237 (50%), Positives = 167/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DA + SH+L+LR GMI + + G+Y+WLP+G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAVVISHQLLLRAGMIRRLASGLYTWLPMGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPAVQPAELWQESGRWEQYGPELLRLKDRHEREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSF L+ +  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHLSQDSLQQTYDGMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y +IF RLGL   P++A++G IGG  SHEF VLA++GE  +  S    D+    E  
Sbjct: 181 YSKIFSRLGLDFRPVQADNGSIGGSGSHEFHVLANSGEDDIVFSDS-SDYAANIEKA 236



 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/193 (36%), Positives = 112/193 (58%), Gaps = 4/193 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K   V  RGIEVGHIF  GTKYS  M  +     GK   +
Sbjct: 378 PLPEVADLRNVVEGDPSPDGKGTLVIKRGIEVGHIFQLGTKYSEAMKLSVLSEQGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE +HD +GI+WP ++APF+I+L+ +K   +  + A +K+YA L
Sbjct: 438 IMGCYGIGVSRVVAAAIEQNHDERGILWPSALAPFQIALVPLKYETESVKQATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  +    G +FA  +L+G P ++++  + +S+  +E K R     +++ 
Sbjct: 498 TAAGFEVLLDDRDKKTSPGVKFADMELIGIPHRIVISDRGLSEGVLEYKGRRDSESQNLP 557

Query: 431 LEEVINYASHRFS 443
           + E++++ + + S
Sbjct: 558 IGELMSFITEKLS 570


>gi|116048881|ref|YP_792318.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|313105843|ref|ZP_07792106.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
 gi|122257988|sp|Q02IB8|SYP_PSEAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|115584102|gb|ABJ10117.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310878608|gb|EFQ37202.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
          Length = 571

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 120/237 (50%), Positives = 167/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DA + SH+L+LR GMI + + G+Y+WLP+G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAVVISHQLLLRAGMIRRLASGLYTWLPMGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPAVQPAELWQESGRWEQYGPELLRLKDRHEREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSF L+ +  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHLSQDSLQQTYDGMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y +IF RLGL   P++A++G IGG  SHEF VLA++GE  +  S    D+    E  
Sbjct: 181 YSKIFSRLGLDFRPVQADNGSIGGSGSHEFHVLANSGEDDIVFSDS-SDYAANIEKA 236



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/193 (35%), Positives = 111/193 (57%), Gaps = 4/193 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K   V  RGIEVGHIF  GTKYS  M        GK   +
Sbjct: 378 PLPEVADLRNVVEGDPSPDGKGTLVIKRGIEVGHIFQLGTKYSEAMKLNVLSEQGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE +HD +GI+WP ++APF+I+L+ +K   +  + A +K+YA L
Sbjct: 438 IMGCYGIGVSRVVAAAIEQNHDERGILWPSALAPFQIALVPLKYETESVKQATDKLYAEL 497

Query: 373 SKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  +    G +FA  +L+G P ++++  + +++  +E K R     +++ 
Sbjct: 498 TAAGFEVLLDDRDKKTSPGVKFADMELIGIPHRIVISDRGLNEGVLEYKGRRDSESQNLP 557

Query: 431 LEEVINYASHRFS 443
           + E++++ + + S
Sbjct: 558 IGELMSFITEKLS 570


>gi|308174589|ref|YP_003921294.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307607453|emb|CBI43824.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|328554512|gb|AEB25004.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
          Length = 643

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 159/432 (36%), Gaps = 32/432 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++   G 
Sbjct: 235 LRMLEEAKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKELSLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S DL+  SG ++ Y   M    + +++ ++  P +      I++  I SYR
Sbjct: 294 EHVYTPVLGSKDLYETSGHWEHYQDGMFPPMEMDNETLVLRPMNCPHHMMIYKQDIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K  + +       ++ 
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEEFIRTVRLIQDVYE 413

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISL 245
             GL     R                  D  +T+ +   D M     S      D+I   
Sbjct: 414 DFGLSDYTFRLS--------------YRDPEDTEKYFDDDDMWNKAQSMLKAAMDEIGHD 459

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G 
Sbjct: 460 YYEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYVGE 508

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DGK H   +     G +  +   +    +      P  +AP +  +I +     V  D  
Sbjct: 509 DGKQHRPVVIHR--GVVSTMERFVAFLIEEHKGALPTWLAPVQFQVIPVSP--SVHLDYA 564

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +K+  RL + G  V  D   E+IG +   A +   P  ++VG +   +  V ++      
Sbjct: 565 KKVQERLQREGLRVELDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKYGEQK 624

Query: 426 REDMSLEEVINY 437
            E +SL++ +  
Sbjct: 625 SETVSLDDFVKK 636


>gi|321312429|ref|YP_004204716.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|291485328|dbj|BAI86403.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
 gi|320018703|gb|ADV93689.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 643

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/433 (20%), Positives = 161/433 (37%), Gaps = 34/433 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++   G 
Sbjct: 235 LRMLEEAKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKEISLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG +D Y + M    + +++ ++  P +      I++  I SYR
Sbjct: 294 EHVYTPVLGSKELYETSGHWDHYQEGMFPPMEMDNETLVLRPMNCPHHMMIYKQDIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F    +        +      ++
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKDEFIRTVR-LIQDVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
              GL     R                  D  +T+ +   D M     S      D+I  
Sbjct: 413 EDFGLSDYTFRLS--------------YRDPEDTEKYFDDDEMWNKAQSMLKEAMDEIGH 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G
Sbjct: 459 DYYEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIG 507

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGK H   +     G +  +   +    +      P  +AP +  +I +     V  D 
Sbjct: 508 EDGKQHRPVVIHR--GVVSTMERFVAFLIEEHKGALPTWLAPVQFQVIPVSP--AVHLDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+  RL + G  V  D   E+IG +   A +   P  ++VG +   +  V ++     
Sbjct: 564 AKKVQERLQREGLRVEVDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKYGEQ 623

Query: 425 IREDMSLEEVINY 437
             E +SL+E +  
Sbjct: 624 NSETISLDEFVKK 636


>gi|322374759|ref|ZP_08049273.1| threonine--tRNA ligase [Streptococcus sp. C300]
 gi|321280259|gb|EFX57298.1| threonine--tRNA ligase [Streptococcus sp. C300]
          Length = 647

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 157/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + + +++ +       +N 
Sbjct: 619 GQKETQTVPVDKFVAAILADIANK 642


>gi|229144961|ref|ZP_04273357.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|228638483|gb|EEK94917.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
          Length = 640

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 157/444 (35%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEATKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TP+  ++    +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPKQIENEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             + +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYANEIALKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E ++L+  +        N +
Sbjct: 616 EEKSEVIALDVFVATIEEEIKNRK 639


>gi|330828282|ref|YP_004391234.1| Prolyl-tRNA synthetase, family II [Aeromonas veronii B565]
 gi|328803418|gb|AEB48617.1| Prolyl-tRNA synthetase, family II [Aeromonas veronii B565]
          Length = 574

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 121/235 (51%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  +  I+REE
Sbjct: 1   MRTSQYLLSTLKETPSDAEVVSHQLMLRAGMIRKLASGMYAWLPTGLRVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+S+P +Q A+LW ESGR+D YG E+ RL DR+++  + GPTHEEV+T + R 
Sbjct: 61  MNNAGAVEVSMPVVQPAELWQESGRWDDYGPELCRLTDRHNRPFVLGPTHEEVITALVRY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF +  E    +Y KM  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHIDKESLVDTYEKMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y + F R+GL   P++A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 YCKAFTRMGLNFRPVQADTGSIGGTGSHEFQVLAESGEDLIAFSDS-SDYAANIE 234



 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 68/188 (36%), Positives = 108/188 (57%), Gaps = 3/188 (1%)

Query: 258 ATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D     + K +  RGIEVGHIF  GTKYS  M A+     GK   ++MG
Sbjct: 385 EVADLRNVVEGDPSPCGQGKLLLKRGIEVGHIFQLGTKYSEAMKASVLNEAGKSVTMEMG 444

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSK 374
            YGIG  R+VAA IE ++D  GIIWPD++APF+++++ +     +   +  ++ YA L  
Sbjct: 445 CYGIGVSRLVAAAIEQNNDQYGIIWPDAIAPFEVAIVPMNMHKSERVAEQAQQFYAELKA 504

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV +DD  E+ G  FA  +LLG P  +++G + + +  VE K R TG ++++++ ++
Sbjct: 505 AGVDVLFDDRKERPGVMFADMELLGIPHAIVIGDRGLDNGVVEYKCRRTGEKQEVAISDI 564

Query: 435 INYASHRF 442
           I     + 
Sbjct: 565 IAMLKAKL 572


>gi|313497556|gb|ADR58922.1| ProS [Pseudomonas putida BIRD-1]
          Length = 571

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 117/237 (49%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V A++REE
Sbjct: 1   MRTSQYLLATQKETPADAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P++Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSIQPAELWQESGRWEQYGPELLRLKDRHQRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  +F RLGL   P++A++G IGG  SHEF VLA++GE  V  S    D+    E  
Sbjct: 181 YTNVFTRLGLDFRPVQADTGSIGGSYSHEFHVLAESGEDDVIFSDS-SDYAANIEKA 236



 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 114/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  +
Sbjct: 364 DDKHYFGVNWERDLPVPQVADLRNVVEGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEAL 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE S+D KGIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVVLSMGCYGIGVSRVVAAAIEQSYDDKGIIWNDALAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            V R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DVVREATDKLYAELTAAGYEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E KHR     + + L EV+ +   R  
Sbjct: 544 EYKHRTEQDAQALPLNEVLTFLQARVR 570


>gi|328912917|gb|AEB64513.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens LL3]
          Length = 653

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 159/432 (36%), Gaps = 32/432 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++   G 
Sbjct: 245 LRMLEEAKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKELSLGY 303

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S DL+  SG ++ Y   M    + +++ ++  P +      I++  I SYR
Sbjct: 304 EHVYTPVLGSKDLYETSGHWEHYQDGMFPPMEMDNETLVLRPMNCPHHMMIYKQDIHSYR 363

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K  + +       ++ 
Sbjct: 364 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEEFIRTVRLIQDVYE 423

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISL 245
             GL     R                  D  +T+ +   D M     S      D+I   
Sbjct: 424 DFGLSDYTFRLS--------------YRDPEDTEKYFDDDDMWNKAQSMLKAAMDEIGHD 469

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G 
Sbjct: 470 YYEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYVGE 518

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DGK H   +     G +  +   +    +      P  +AP +  +I +     V  D  
Sbjct: 519 DGKQHRPVVIHR--GVVSTMERFVAFLIEEHKGALPTWLAPVQFQVIPVSP--SVHLDYA 574

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +K+  RL + G  V  D   E+IG +   A +   P  ++VG +   +  V ++      
Sbjct: 575 KKVQERLQREGLRVELDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKYGEQK 634

Query: 426 REDMSLEEVINY 437
            E +SL++ +  
Sbjct: 635 SETVSLDDFVKK 646


>gi|296332117|ref|ZP_06874581.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675488|ref|YP_003867160.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296150888|gb|EFG91773.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413732|gb|ADM38851.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 643

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 161/433 (37%), Gaps = 34/433 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++   G 
Sbjct: 235 LRMLEEAKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKEISLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG +D Y + M    + +++ ++  P +      I++  I SYR
Sbjct: 294 EHVYTPVLGSKELYETSGHWDHYQEGMFPPMEMDNETLVLRPMNCPHHMMIYKQDIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F    +        +      ++
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKDEFIRTVR-LIQDVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
              GL     R                  D  +T+ +   D M     S      D+I  
Sbjct: 413 EDFGLSDYTFRLS--------------YRDPEDTEKYFDDDEMWNKAQSMLKEAMDEIGH 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G
Sbjct: 459 DYYEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIG 507

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGK H   +     G +  +   +    +      P  +AP +  +I +     V  D 
Sbjct: 508 EDGKQHRPVVIHR--GVVSTMERFVAFLIEEHKGALPTWLAPVQFQVIPVSP--SVHLDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+  RL + G  V  D   E+IG +   A +   P  ++VG +   +  V ++     
Sbjct: 564 AKKVQERLQREGLRVEVDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKYGEQ 623

Query: 425 IREDMSLEEVINY 437
             E +SL++ +  
Sbjct: 624 NSETISLDDFVKK 636


>gi|312864463|ref|ZP_07724694.1| threonine--tRNA ligase [Streptococcus downei F0415]
 gi|311099590|gb|EFQ57803.1| threonine--tRNA ligase [Streptococcus downei F0415]
          Length = 651

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 162/448 (36%), Gaps = 36/448 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I + + 
Sbjct: 229 KAYLKRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTIERYITDREV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSH 121
            +G   +  P + S DL+  SG +D Y ++M    D  D    +  P +      ++++H
Sbjct: 287 ASGYQHVYTPPIASVDLYKTSGHWDHYREDMFPTMDMGDGEAFVLRPMNCPHHIQVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    ++ +  R E       ++    +  +     +  +  +  + +     
Sbjct: 347 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVEDEFKQTLQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R             +   ADT   + F   +  +          DD
Sbjct: 407 IDVYEDFNITDYSFRLS-----------YRDPADT--HKYFDDDEMWEKSQRMLKAAMDD 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L  ++ +S   ++    F    ++      T
Sbjct: 454 MGLDYYEAEGEAAFYGPKLDI---QVKTALGNDETLSTIQLD----FLLPERF----ELT 502

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GADG++H    +    +  M    A +  ++ G    W             I   ++ 
Sbjct: 503 YIGADGEEHRPVMIHRGIVSTMERFTAYLIETYKGAFPTWLAPHQVT-----VIPVSNEA 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L   G  V  D+  E++  +   +     P Q+IVG K ++D  V ++ 
Sbjct: 558 HADYAWEVAKELRNHGVRVDVDERNEKMQYKIRQSQTHKIPYQLIVGDKEMADKSVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRF-SNNRP 447
             +      SL E ++         +RP
Sbjct: 618 YGSKQTHTESLNEFVDNIQADIARKSRP 645


>gi|295399484|ref|ZP_06809466.1| threonyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109958|ref|YP_003988274.1| threonyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
 gi|294978950|gb|EFG54546.1| threonyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215059|gb|ADP73663.1| threonyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
          Length = 644

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 162/440 (36%), Gaps = 30/440 (6%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  LQE   RD      +L L      +  +G+  WLP G      +   I +++   G
Sbjct: 234 YLRQLQEAKERDHRKLGKELELFMT-SQKVGQGLPLWLPKGATVRRIIERYIVDKEIELG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S +L+  SG +D Y + M    + +++ ++  P +      I+++ I SY
Sbjct: 293 YQHVYTPVLGSVELYKTSGHWDHYKENMFPPMEMDNEQLVLRPMNCPHHMMIYKNKIHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++    R E+      ++    +  +     + P+  K  + ++    L ++
Sbjct: 353 RELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKDEFKRVVNLILEVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL     R                       + +   +  +          D++   
Sbjct: 413 KDFGLDEYSFRLSYRDPHDKE-------------KYYDDDEMWEKAQSMLREAMDELGLE 459

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+ G 
Sbjct: 460 YYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFD----LTYIGE 508

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DGK H   +     G +  +   +    +     +P  +AP ++ +I +    +   D  
Sbjct: 509 DGKPHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVEVIPVSP--EAHLDYA 564

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            K+   L   G  V  D   E+IG +   A +   P  ++VG K ++++ V ++      
Sbjct: 565 YKVKETLQSQGFRVEVDGRDEKIGYKIREAQIQKIPYMLVVGDKEMAENAVNVRKYGEQK 624

Query: 426 REDMSLEEVINYASHRFSNN 445
            E M+L + I         N
Sbjct: 625 SETMALADFIAALKAEVRRN 644


>gi|260891090|ref|ZP_05902353.1| threonine--tRNA ligase [Leptotrichia hofstadii F0254]
 gi|260859117|gb|EEX73617.1| threonine--tRNA ligase [Leptotrichia hofstadii F0254]
          Length = 636

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 162/440 (36%), Gaps = 44/440 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + +H  G   ++P G +  + +  I R E  + G
Sbjct: 230 YLTMMEEAEKRDHRKLGKQLDLF--FVDEHGPGFPFFMPKGVELFNKLQEIWRVEHKKRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +   +LW  SG + +Y + M      ++K     P +       +++++ SY
Sbjct: 288 YQEIKTPIMLDKELWEISGHWFNYRENMYTST-IDEKEYAIKPMNCPGSIIAYKNNLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP  + ++ L  R E      G+MR R F   DA+ F  T E  +    ++   Y + 
Sbjct: 347 KDLPLKYGEMGLVHRHEFSGALHGLMRVRAFTQDDAHVFC-TKEQIEEQIIEIIDLYDKF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G                   E+ +   T   +   S +  +    +  +  +    
Sbjct: 406 YTVFG------------------FEYHIELSTKPDKAIGSDEIWEMAEANLKSALEHKGI 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    D    K+ DS+    +     ++    F    ++      ++ G
Sbjct: 448 NYKLNPGDGAFYGPKIDF---KMKDSIGRIWQCGTIQLD----FNLPARF----EMSYIG 496

Query: 305 ADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           ADG+ H   M    +     R +  +IE              A                 
Sbjct: 497 ADGEKHEPVMIHRAMYGSLERFIGILIEHYAGAFPTWLAPVQARILTI-------SDEQV 549

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHR 421
              ++++ +L   G  V  D   E+IG +   A+     P+Q+I+G   V++++V ++  
Sbjct: 550 PFAKELFTKLQDAGIRVELDTRVEKIGYKIREANGDQKIPVQLIIGKNEVANNEVNVRRF 609

Query: 422 LTGIREDMSLEEVINYASHR 441
            +   +++S++E+I      
Sbjct: 610 GSQDSKNISVDEIIKTLKQE 629


>gi|229190445|ref|ZP_04317445.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228593058|gb|EEK50877.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 10876]
          Length = 640

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 155/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 KYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TP+  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPKQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             + +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYANEIAHKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E ++L+  +        N +
Sbjct: 616 EEKSEVIALDVFVASIEEEIKNRK 639


>gi|157693298|ref|YP_001487760.1| threonyl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|157682056|gb|ABV63200.1| threonine--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 646

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/433 (19%), Positives = 161/433 (37%), Gaps = 34/433 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++ R G 
Sbjct: 238 LRLLEEAKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKEVRLGY 296

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + +L+  SG +  Y ++M  + + +++ ++  P +      I+++   SYR
Sbjct: 297 EHVYTPVLANVELYKTSGHWAHYQEDMFPVMEMDNEDLVLRPMNCPHHMMIYKNEPHSYR 356

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F    +        +      ++
Sbjct: 357 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKDEFIRTVR-LIEEVY 415

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
              GL     R                  D  +T+ +   D M     S      D++  
Sbjct: 416 QDFGLNDYTFRLS--------------YRDPEDTEKYFDDDAMWNKAQSMLKDAMDELGH 461

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  +L + + +S   ++    F    ++      T+ G
Sbjct: 462 DYYEAEGEAAFYGPKLDV---QVKTALGKEETLSTVQLD----FLLPERFD----LTYIG 510

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGK H   +     G +  +   +    +      P  +AP +  +I +     V  D 
Sbjct: 511 EDGKHHRPVVIHR--GVVSTMERFVAFLIEEYKGALPTWLAPVQFQVIPVSP--SVHLDY 566

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+  RL   G  V  D   E+IG +   A +   P  ++VG +   +  V ++     
Sbjct: 567 AKKVQERLQLEGLRVELDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKYGEQ 626

Query: 425 IREDMSLEEVINY 437
             E M LE  + +
Sbjct: 627 DSETMDLEAFVKH 639


>gi|169634342|ref|YP_001708078.1| threonyl-tRNA synthetase [Acinetobacter baumannii SDF]
 gi|238688108|sp|B0VKJ4|SYT_ACIBS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169153134|emb|CAP02213.1| threonyl-tRNA synthetase [Acinetobacter baumannii]
          Length = 640

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 142/441 (32%), Gaps = 38/441 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 231 YIKRIEEAENRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG   +Y + M        +     P +      +F   +KSY
Sbjct: 289 YQEIKTPQIVDFTLWEKSGHAANYAENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  K          L +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTKEQIGKE-VADFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P                           D    S     D    
Sbjct: 407 YKDFGFEEVQMKLSTRPEKR-----------------VGDDALWDLAEKSLADALDAAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +      +    F    +           
Sbjct: 450 EWELQPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQCD----FNLPVRLDASY---VTE 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +D  V +    +G+      ++    +      P  ++P +  ++NI        +A
Sbjct: 500 ENERDQPVMLHRAILGSFERFIGILI---EHYAGFMPPWLSPVQACVMNITDS---QAEA 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R   
Sbjct: 554 SEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGK 613

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS++  I+      +  
Sbjct: 614 NLGTMSVDAFIDLVKSAVAER 634


>gi|331007686|ref|ZP_08330821.1| Prolyl-tRNA synthetase [gamma proteobacterium IMCC1989]
 gi|330418506|gb|EGG93037.1| Prolyl-tRNA synthetase [gamma proteobacterium IMCC1989]
          Length = 579

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 123/282 (43%), Positives = 176/282 (62%), Gaps = 2/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR G++ + + G+Y+W+PLG + L  V  IIREE
Sbjct: 1   MRASRFLLSTSKETPADAEVISHQLMLRAGLVRKLASGLYTWMPLGLRVLRKVEHIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA E+ +P +Q A+LW ESGR+  YG E+LR+ DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNKSGAQEVLMPVVQPAELWQESGRWQEYGPELLRIKDRHQREFCLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKDAYSF +     + +Y+ M  +
Sbjct: 121 DVNSYKQLPANFYQIQTKFRDEIRPRFGIMRSREFIMKDAYSFHIDQASLQDTYDVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL   P+ A++G IGG  SHEF VLA +GE  +  S    D+    E  +  
Sbjct: 181 YCNIFDRIGLDYRPVIADNGSIGGSGSHEFHVLASSGEDDIAFSD-GSDYAANVEMAEAI 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           +  +  +   + T   A       E + D L    + S + +
Sbjct: 240 ETNTRKAATAELTE-VATPDQQTIEAVCDFLNLTPQQSVKTL 280



 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/195 (34%), Positives = 106/195 (54%), Gaps = 4/195 (2%)

Query: 251 QWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +         D+ N  + D     +      RGIEVGHIF  GTKYS  M+AT    +GK
Sbjct: 383 ERDCDLGEVVDIRNVMVGDPSPCGKGTLDIKRGIEVGHIFQLGTKYSESMNATVLDQNGK 442

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              + MG YGIG  RVVAA IE +HD  GIIWP ++APF+++LI I A       + C+ 
Sbjct: 443 AQAITMGCYGIGVTRVVAAAIEQNHDDNGIIWPSALAPFQVALIPINAHKSAAVSEKCDV 502

Query: 368 IYARLSKVGCDVFW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +Y  L   G DV + D+   ++G   A  +L+G P +++VG + + + +VE K R    +
Sbjct: 503 LYKELQAAGYDVIYMDEPKARLGVMLADTELVGIPHRIVVGDRGLENGQVEYKGRRDSEK 562

Query: 427 EDMSLEEVINYASHR 441
           +++    V+++ + +
Sbjct: 563 QEIDAGSVVDFLTAQ 577


>gi|327470637|gb|EGF16093.1| threonine--tRNA ligase [Streptococcus sanguinis SK330]
          Length = 645

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 153/445 (34%), Gaps = 32/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             KY     +   RD      +L L   MI  +  +G+  WLP G      +   I +++
Sbjct: 228 LKKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKE 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRS 120
             +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ 
Sbjct: 286 LASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKH 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SYR LP    +I +  R E       ++    +  +     +TPE  +  + +    
Sbjct: 346 HVHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R            +     D  E          +          D
Sbjct: 406 IIDVYADFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALD 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 453 EMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I   +         +     +    I   ++ 
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEA 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G     D+  E++  +   +     P Q+IVG K V DS V ++ 
Sbjct: 558 HIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDSTVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                   + ++E +       +N 
Sbjct: 618 YGQKETHTIPVDEFVEQILADIANK 642


>gi|149378080|ref|ZP_01895802.1| prolyl-tRNA synthetase [Marinobacter algicola DG893]
 gi|149357649|gb|EDM46149.1| prolyl-tRNA synthetase [Marinobacter algicola DG893]
          Length = 577

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 121/237 (51%), Positives = 161/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +   +E P DAEI SH++MLR GMI + + G+YSWLP+G + L  V  I+REE
Sbjct: 1   MRASRYLIATQKETPADAEIISHQMMLRAGMIRKLASGLYSWLPMGLRVLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +P +Q A+LW ESGR++ YG E+LR+ DR+ +   +GPTHEEV+TD+ R+
Sbjct: 61  MDKSGAQEVLMPAVQPAELWQESGRWEQYGGELLRMNDRHGRDFCFGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE RPRFGVMR+REF+MKDAYSF +  E    +Y  M  +
Sbjct: 121 ELKSYKELPANFYQIQTKFRDERRPRFGVMRAREFIMKDAYSFHVNAESLNDTYQVMHRT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGL   P+ A+SG IGG  SHEF VLA +GE  +       D+    E  
Sbjct: 181 YCAIFDRLGLDYRPVEADSGAIGGSASHEFHVLASSGEDAIVF-STDSDYAANIEKA 236



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 107/191 (56%), Gaps = 3/191 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +     A   D+ +    D  P+ K      RGIEVGHIF  G KYS  M+AT    +GK
Sbjct: 378 ERDVALARVEDLRDVVEGDPSPDGKGTLEIRRGIEVGHIFKLGNKYSKAMNATVLDENGK 437

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  R+VA+ IE +HD KGIIWPD++APF+++++ +          A EK
Sbjct: 438 SAILEMGCYGIGVSRIVASSIEQNHDDKGIIWPDAIAPFEVAIVTLNGHKSPAVMAAGEK 497

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y +L + G DV  DD  E+ G +FA  +L+G P + +V  + ++   +E K R    ++
Sbjct: 498 LYEQLRQAGFDVLLDDRNERPGVKFADMELIGIPHRFVVSERGLAAETLEYKGRRDEDKQ 557

Query: 428 DMSLEEVINYA 438
           D+ L E + + 
Sbjct: 558 DIPLAEALPFL 568


>gi|302335586|ref|YP_003800793.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Olsenella uli
           DSM 7084]
 gi|301319426|gb|ADK67913.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Olsenella uli
           DSM 7084]
          Length = 588

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/438 (18%), Positives = 151/438 (34%), Gaps = 43/438 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      ++ L   M+ +   G   WLP G +  + +    +E Q+R G  ++  
Sbjct: 190 EAEKRDHRKIGKEMGLF--MMSEAGPGFPFWLPNGMRVRNALMDYWQEMQDRFGYEQVQT 247

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + S  LW  SG +D Y   M      +D+     P +      +++S  +SYR+LP  
Sbjct: 248 PIILSRTLWETSGHWDHYKDNMYT-TQIDDEDFAIKPMNCPGACLVYKSKPRSYRDLPLK 306

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             +  L  R EL+    G+ R REF   DA+ F    + ++   +      +  ++    
Sbjct: 307 LAEAGLDHRHELKGALHGLFRVREFTQDDAHLFIRPDQITEQVTDTA--HLITTYYAQFG 364

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +   + P     S E    A+ G                      D +     + E
Sbjct: 365 FPYHVELSTRPEDSMGSDEDWERAEQG-----------------LRDALDSMGVDYIVNE 407

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KD 309
              A Y    D H   L D L    +     ++      F           +   DG K 
Sbjct: 408 GDGAFYGPKIDFH---LQDCLGRTWQCGTIQLDFQLPHNFQ--------LEYTAPDGSKQ 456

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             + +   G G+      ++   ++GK   W           + +    +  RD   ++ 
Sbjct: 457 QPIMIHRAGFGSFERFIGMLIEQYEGKFPTW------LSPCQVKVLPVSEKTRDYALEVA 510

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVA-DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             L   G  V  D   E+IG +   A      P  +I+G K    + + ++ R +     
Sbjct: 511 RTLRAAGVRVKVDVRDEKIGYKIREARSADRVPYMLILGEKEAEANNISVRDR-SNETHQ 569

Query: 429 MSLEEVINYASHRFSNNR 446
            +LE+ +   +    + R
Sbjct: 570 ATLEDFVTEITAEIRDRR 587


>gi|302381720|ref|YP_003817543.1| threonyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192348|gb|ADK99919.1| threonyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
          Length = 639

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 144/438 (32%), Gaps = 39/438 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      ++ L    + +  +G+  W P G      + A +R   +  G
Sbjct: 232 YLLRIEEAEKRDHRKLGRQMELF--HMQEEGRGMVFWHPKGWILWQVIEAYMRRRLDAAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +     W  SG ++ Y   M        + +   P +      IF    +SY
Sbjct: 290 YVEVKTPQVLDRKFWEASGHWEKYRPNMFVCETVEGETLSLKPMNCPGHVQIFGIGQRSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R E      G+MR R F   DA+ F    +  + +  +       +
Sbjct: 350 RELPLRMAEFGACHRYEPSGALHGLMRVRGFTQDDAHIFCREDQIVEET-RRFIELTRIV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              LG+++  +   + P     S EF                  D               
Sbjct: 409 HADLGMQTAYINLATRPDVRAGSDEF-----------------WDKAEGMLGEAARLAGV 451

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A YA   D     + D++          ++              ++A + G
Sbjct: 452 DPVIAEGDGAFYAPKLDF---VVKDAIGREWTCGTLQLDYVLP--------ERLNAEYVG 500

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +    +G+      ++  ++ G   +W   V     ++            
Sbjct: 501 EDGQKHRPVMLHRAILGSFERFIGIMIENYAGAFPLWLAPVQAVVATIT------SDADG 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++ A+    G  V  D   E++G +     +   P+  +VG       +V I+   +
Sbjct: 555 YAEEVAAKFKAAGLRVETDLRNEKVGYKVREHSVGKVPVIAVVGRNEAEQGQVAIRRLGS 614

Query: 424 GIREDMSLEEVINYASHR 441
             +  +S+EE I   +  
Sbjct: 615 QAQTVVSVEEAIRILTEE 632


>gi|332653846|ref|ZP_08419590.1| threonine--tRNA ligase [Ruminococcaceae bacterium D16]
 gi|332516932|gb|EGJ46537.1| threonine--tRNA ligase [Ruminococcaceae bacterium D16]
          Length = 589

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 153/442 (34%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L   M+     G   +LP G    + +    R+   + G
Sbjct: 182 YLQRIEEAKKRDHRKLGKELGLF--MLRDEGPGFPFFLPKGMTLKNTLLDYWRQIHKKYG 239

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + +  LW  SG +D Y + M      + +     P +      ++ S   SY
Sbjct: 240 YVEISTPIILNRQLWERSGHWDHYKQNMYT-TVIDGEDFAIKPMNCPGGMLVYASEPHSY 298

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +I L  R EL     G+ R R F   DA+ F    +             ++ 
Sbjct: 299 RELPLRVGEIGLVHRHELSGALHGLFRVRCFSQDDAHVFMTREQMKD---------VIQE 349

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             RL  +       S  I      E  +           + +  +           D+  
Sbjct: 350 TVRLFDEVYSTFGLSYTIELSTMPEDHI----------GTVEEWEHNQDILKNAITDMGK 399

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H   L DSL        R  + G I    ++        + G
Sbjct: 400 EFVINEGDGAFYGPKLDFH---LADSLG-------RTWQCGTI-QLDSQLPERFELEYTG 448

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +    +G++     VI    +     +P  +AP ++ ++ +         
Sbjct: 449 EDGQKHRPVMIHRVVLGSIERFIGVIT---EHFAGAFPAWLAPVQVKILPVTDR---AAA 502

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L + G  V  D   E+IG +   A +   P  ++VG + + ++ V ++ R  
Sbjct: 503 YADQLSKQLDEAGYRVETDHRNEKIGKKIREATMEKIPYMIVVGDRDMENNTVSVRLRTG 562

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MSL +          + 
Sbjct: 563 EDLGAMSLADFTAKLKAVVDSK 584


>gi|53728893|ref|ZP_00134603.2| COG0441: Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126207707|ref|YP_001052932.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae L20]
 gi|166223315|sp|A3MYU1|SYT_ACTP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126096499|gb|ABN73327.1| threonyl-tRNA synthetase ThrS [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 643

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/445 (15%), Positives = 139/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRRIGKALDLY--HMQEEAPGLVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW  +G + +Y  +++      ++     P +      IF   +
Sbjct: 287 EYDYQEVKGPFMMDRVLWERTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIRMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P                           D            
Sbjct: 405 YDIYSTFGFSNIQVKLSTRPENR-----------------IGDDAMWDRAEDGLAKALTA 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                A+
Sbjct: 448 NGLSYEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTIQLDFALPGRLD--------AS 496

Query: 302 FKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    +G+   V +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   LS  G  V  D   E++G +     L   P  ++ G K +   KV ++ 
Sbjct: 551 QADYVQKVTKALSDAGIRVKSDLRNEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVSVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        +++E +    ++    
Sbjct: 611 RKGADLGTFTIDEFVEILKNQVKAR 635


>gi|325694840|gb|EGD36745.1| threonine--tRNA ligase [Streptococcus sanguinis SK150]
          Length = 647

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 152/445 (34%), Gaps = 32/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             KY     +   RD      +L L   MI  +  +G+  WLP G      +   I +++
Sbjct: 228 LKKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKE 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRS 120
             +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ 
Sbjct: 286 LASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKH 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SYR LP    +I +  R E       ++    +  +     +TPE  +  + +    
Sbjct: 346 HVHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R            +     D  E          +          D
Sbjct: 406 IIDVYADFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALD 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 453 EMDVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I   +         +     +    I   ++ 
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEA 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++ 
Sbjct: 558 HIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                   + ++E +       ++ 
Sbjct: 618 YGQKETHTIPVDEFVEQILADIASK 642


>gi|163940157|ref|YP_001645041.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|163862354|gb|ABY43413.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
          Length = 639

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 154/447 (34%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q
Sbjct: 231 KLEEYLHFVEEAAKRNHRELGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQ 288

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N     E+  P + + +LW +SG +  Y   M   ++ + K+    P +      +F++ 
Sbjct: 289 NEYNYQEVRTPFMMNQELWEKSGHWGHYKDNM-YFSEVDHKSFALKPMNCPGHMLMFKNK 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    +     R E      G++R R F   DA+   +TPE  +     +   
Sbjct: 348 LHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIQSVLAQ 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G                   E+ V   T            +    +      
Sbjct: 407 IDYVYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAELALENVLQ 448

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     + E   A Y    D H   + D+L  + +     ++    F    K+      
Sbjct: 449 SLNYKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTVQLD----FQMPEKFD----L 497

Query: 301 TFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   + +      +    +G++    A++     G    W        + +  I   + 
Sbjct: 498 NYIDENNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNA 552

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V      +I  +L++ G  V  D   E++G +   A +   P  +++G K +    V ++
Sbjct: 553 VHEQYANRIADKLAQAGIRVERDIRDEKLGYKIREAQMQKVPYVLVIGDKEMESEAVNVR 612

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
                  E + L   +        N +
Sbjct: 613 KYGEEKSEVVELNAFVESMKEEIKNRK 639


>gi|257784431|ref|YP_003179648.1| threonyl-tRNA synthetase [Atopobium parvulum DSM 20469]
 gi|257472938|gb|ACV51057.1| threonyl-tRNA synthetase [Atopobium parvulum DSM 20469]
          Length = 588

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 156/446 (34%), Gaps = 43/446 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   I +   RD      ++ L   M+     G   WLP G    + +     E Q 
Sbjct: 181 LAQYLKMIEEAEKRDHRKIGREMELF--MMSDFGPGSPFWLPNGMALRNALTEYWHEMQA 238

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  E+  P + S  LW  SG +D Y + M      +++     P +      I++S  
Sbjct: 239 RFGYQEVQTPLILSRSLWETSGHWDHYKENMYTTT-VDEEDFAIKPMNCPGACLIYKSKP 297

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    +  L  R E++    G+ R REF   DA+ F    + ++   +      
Sbjct: 298 RSYRDLPMKLAEAGLDHRYEMKGALHGLFRVREFTQDDAHLFIRPDQITEQVTDAS--HL 355

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +  ++        +   + P     S E    A+ G                      D 
Sbjct: 356 ITAYYAQFGFPYRVELSTRPEDSMGSDEDWERAEQG-----------------LRDALDA 398

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     + E   A Y    D H   L D L  + +     ++      F           
Sbjct: 399 MGIDYVVNEGDGAFYGPKIDFH---LTDCLGRSWQCGTIQLDFQLPHNFQ--------LE 447

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +DG K   + +   G G+      ++  +++GK  +W           + I    + 
Sbjct: 448 YIDSDGTKKQPIMIHRAGFGSFERFIGILTENYEGKFPVW------LSPCQVKILPVSEK 501

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA-DLLGFPLQVIVGSKFVSDSKVEIK 419
            R    ++  +L+  G  V  DD  E+IG +   A  L   P  +I+G + V    + ++
Sbjct: 502 SRSYAHEVADKLAAAGIRVKVDDRDEKIGYKIREARSLDRVPYMLILGEQEVEAGNISVR 561

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R +       L+E I       S  
Sbjct: 562 DR-SNETHAAELDEFIAQVVKENSER 586


>gi|253989346|ref|YP_003040702.1| threonyl-tRNA synthetase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780796|emb|CAQ83958.1| threonyl-tRNA synthetase [Photorhabdus asymbiotica]
          Length = 642

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 67/446 (15%), Positives = 140/446 (31%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   + +   RD      +L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LNTYLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    +W  +G +++Y + M       ++     P +      IF   +
Sbjct: 287 EYQYQEVKGPFMMDRVMWERTGHWENYNEHMFT-TSSENREYCVKPMNCPGHIQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +  +   +      
Sbjct: 346 KSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIHRE-VSNCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G + I ++  + P     + E    A+                  S      +
Sbjct: 405 YDVYSTFGFEKIVVKLSTRPEKRIGTEEQWNQAE-----------------ESLAAALQE 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y    +     L D L    +     ++       G        A+
Sbjct: 448 NGVQFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFSLPSRLG--------AS 496

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G + +    V +    +G++     ++   + G    W           + +      
Sbjct: 497 YVGENNERKVPVMIHRAVLGSLERFIGILTEEYAGFFPTW------IAPQQVVVMNITDG 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +++  +  + G     D   E+IG +     L   P  ++ G K V   K+ ++ 
Sbjct: 551 QADYVQELAKKFQESGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGEKEVESGKISVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R       + + E I        + +
Sbjct: 611 RRGKDLGSIDVNEFIEKLLIEIRSRK 636


>gi|71898248|ref|ZP_00680422.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Ann-1]
 gi|71731987|gb|EAO34044.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Ann-1]
          Length = 635

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 142/438 (32%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   +     RD         L    + +   G+  W P G      +   IR     +G
Sbjct: 233 YMQRLQDAEKRDHRKIGKAQDLF--HLQEEGPGLVFWHPKGWVIWQTIENYIRRVYRNSG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y + M    D   +     P +      +F   + SY
Sbjct: 291 YGELRCPQILDVSLWQKSGHWDNYKENMF-FTDSEKRTYAVKPMNCPGHVQVFNQGLHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F  T    +          L++
Sbjct: 350 RDLPIRYGEFGACHRNEPSGALHGLLRVRGFTQDDGHIFC-TEAQIEAEVTAFHRQALQV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G ++I ++    P                           D    +  +       
Sbjct: 409 YADFGFENIQIKIALRPDKR-----------------LGDSLSWDKAEAALRSALSACEV 451

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L D++    ++    ++       G        A +  
Sbjct: 452 EWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTIQVDFMMPGRLG--------AEYVD 500

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               + H V +    +G+M     ++    +    IWP  +AP ++ + NI        +
Sbjct: 501 ERSQRRHPVMLHRAIVGSMERFIGILI---EHYAGIWPTWLAPVQVVIANIT---DAQYE 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E+++  L   G  V  D   E+IG +     L   P  ++VG +   +  V ++    
Sbjct: 555 YAEQVHKALLNQGFRVNIDLRNEKIGYKIREHTLQRVPYLLVVGDREKENGTVAVRTCSR 614

Query: 424 GIREDMSLEEVINYASHR 441
                MS+   +      
Sbjct: 615 EDLGAMSISAFVERLQTE 632


>gi|212638370|ref|YP_002314890.1| threonyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
 gi|226701399|sp|B7GGN9|SYT_ANOFW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|212559850|gb|ACJ32905.1| Threonyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
          Length = 643

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 159/443 (35%), Gaps = 38/443 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +LQE   RD      +L L      +  +G+  WLP G      +   I +++   G
Sbjct: 234 YLRLLQEAKERDHRKLGKELDLFMT-SQKVGQGLPLWLPKGATIRRTIERYIVDKELSLG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S +L+  SG +D Y   M    + +++ ++  P +      +++  I SY
Sbjct: 293 YQHVYTPVLGSVELYKTSGHWDHYKDGMFPPMEMDNEQLVLRPMNCPHHMMVYKHKIHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++    R E+     G+ R R   + DA+ F    +     + ++    L +
Sbjct: 353 RELPIRIAELGTMHRYEMSGALTGLQRVRGMTLNDAHIFVRPDQIKDE-FKRVVNLILDV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDII 243
           +   GL     R                  D  + + +   D M     S      D++ 
Sbjct: 412 YKDFGLTDYSFRLS--------------YRDPQDKEKYYDDDAMWEKAQSMLKEAMDELG 457

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+ 
Sbjct: 458 LDYYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFD----LTYI 506

Query: 304 GADGKDHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G DGK H   +   G+     R VA +IE                      +I       
Sbjct: 507 GEDGKPHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTWLAPIQVQVIPVAPSI------H 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G  V  D+  E+IG +   A +   P  ++VG   V++  V ++  
Sbjct: 561 MDYAYEVKHALQVAGIRVEVDEREEKIGYKIREAQMQKIPYMLVVGDNEVNERAVNVRKY 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
                E M L+  ++  +     
Sbjct: 621 GEQKSETMPLDAFVDSIAKEVRK 643


>gi|307245030|ref|ZP_07527126.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307253984|ref|ZP_07535834.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258439|ref|ZP_07540179.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306854073|gb|EFM86282.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306863062|gb|EFM95006.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306867501|gb|EFM99349.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 643

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/445 (15%), Positives = 139/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRRIGKALDLY--HMQEEAPGLVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW  +G + +Y  +++      ++     P +      IF   +
Sbjct: 287 EYDYQEVKGPFMMDRVLWERTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIRMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P                           D            
Sbjct: 405 YDIYSTFGFSNIQVKLSTRPENR-----------------IGDDAMWDRAEDGLAKALTA 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                A+
Sbjct: 448 NGLSYEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTIQLDFALPGRLD--------AS 496

Query: 302 FKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    +G+   V +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   LS  G  V  D   E++G +     L   P  ++ G K +   KV ++ 
Sbjct: 551 QADYVQKVTKALSDAGIRVKSDLRNEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVSVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        +++E +    ++    
Sbjct: 611 RKGADLGTFTIDEFVEILKNQVKAR 635


>gi|302024085|ref|ZP_07249296.1| threonyl-tRNA synthetase [Streptococcus suis 05HAS68]
 gi|330832440|ref|YP_004401265.1| threonyl-tRNA synthetase [Streptococcus suis ST3]
 gi|329306663|gb|AEB81079.1| threonyl-tRNA synthetase [Streptococcus suis ST3]
          Length = 649

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 177/449 (39%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRTLERYITDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      ++++H
Sbjct: 287 TSGYQHVYTPPLASVELYKTSGHWEHYSEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    ++ +  R E      G+ R RE  + D + F  TPE  +  + K    
Sbjct: 347 VRSYRELPVRIAELGMMHRYEKSGALTGLQRVREMTLNDGHIFV-TPEQIQEEFKKALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDF 239
            + ++    L     R                  D  + + +  + +  +          
Sbjct: 406 IIDVYADFNLNDYRFRLS--------------YRDPEDKEKYYDNDEMWENAQRMLKGAM 451

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D++       E   A Y    D+   ++  +L   + +S   ++    F    ++     
Sbjct: 452 DEMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERF----G 500

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            T+ GADG++H   M   G+ +       I    +     +P  +AP ++++I I    +
Sbjct: 501 LTYIGADGEEHRPVMIHRGVISTMERFTAILI--ETYKGAFPTWLAPTQVTMIPISV--E 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+   L   G  V  D+  E++  +   +     P Q+IVG K + D+ V ++
Sbjct: 557 AHLDYAWKVAKELQDRGVRVHVDERNEKMQYKIRQSQTSKIPYQLIVGDKEMEDNAVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +   +  S+ E +++        +RP
Sbjct: 617 RYGSKATQTQSVAEFVDHILADIARKSRP 645


>gi|229543582|ref|ZP_04432642.1| threonyl-tRNA synthetase [Bacillus coagulans 36D1]
 gi|229328002|gb|EEN93677.1| threonyl-tRNA synthetase [Bacillus coagulans 36D1]
          Length = 640

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 161/438 (36%), Gaps = 32/438 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +L L T    +  +G+  WLP G      +   I +++ + G 
Sbjct: 232 LKFLEEAKERDHRKIGKELELFTN-SQKVGQGLPLWLPKGATIRRTIERYIVDKEVKLGY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S DL+  SG +D Y ++M  +   +++ ++  P +      ++++ I SYR
Sbjct: 291 DHVYTPVLGSVDLYKTSGHWDHYQEDMFPVMKMDNEELVLRPMNCPHHMMVYKNTIHSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++ L  R E+      ++    +  +     + P+  K  + ++    L ++ 
Sbjct: 351 ELPIRIAELGLMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEEFKRVVELILEVYK 410

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISL 245
              +     R                  D   T  +   D M     +      DD    
Sbjct: 411 DFNITDYSFRLS--------------YRDPENTDKYYDDDEMWNKAQAMLKETMDDFGFD 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+ G 
Sbjct: 457 YYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFD----LTYVGE 505

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DGK H   +     G +  +   +    +     +P  +AP ++ +I +        D  
Sbjct: 506 DGKPHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPIQVQVIPVSP--DAHYDYA 561

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            K+   L   G     D   E++G +   A +   P  +IVG +  +D+ V ++      
Sbjct: 562 RKVQEALKAEGVRAELDARDEKLGYRIREAQVQKIPYALIVGDQEATDNAVNVRKYGEKQ 621

Query: 426 REDMSLEEVINYASHRFS 443
            E + ++  ++       
Sbjct: 622 TETVPVDTFLSKIKEEIK 639


>gi|49479942|ref|YP_036488.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|218903521|ref|YP_002451355.1| threonyl-tRNA synthetase [Bacillus cereus AH820]
 gi|228927442|ref|ZP_04090498.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229121934|ref|ZP_04251153.1| Threonyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|49331498|gb|AAT62144.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|218538936|gb|ACK91334.1| threonyl-tRNA synthetase [Bacillus cereus AH820]
 gi|228661583|gb|EEL17204.1| Threonyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228832235|gb|EEM77816.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 639

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 156/444 (35%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G K   +   + P                           +    S       + 
Sbjct: 410 VYKTFGFKYE-VELSTRPEDS-----------------MGDDKLWEQAEASLENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               + + L+  +       +N +
Sbjct: 616 EEKSDVIELDMFVESMKEEINNRK 639


>gi|308513249|ref|YP_003474861.2| threonine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|307346955|gb|ADC90325.2| threonine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 646

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 145/444 (32%), Gaps = 43/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      ++ L   M  +   G   +LP G    + +    RE   R  
Sbjct: 230 YLAKLEEAKRRDHRKLGKEMNLF--MFSEEGPGFPFFLPNGMILKNTLLDYWREVHRRED 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + +  LW  SG +  Y   M      +D+     P +       F+S I SY
Sbjct: 288 YREISTPIMLNRHLWETSGHWFHYRDNMYT-TVIDDEDFAIKPMNCPGSMLTFKSTIHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R E      G+MR R F   DA+ F    +        + +     
Sbjct: 347 RDLPLRLAELGLVHRHEKSGVLHGLMRVRAFTQDDAHIFMTPDQIRDEIKRVVRLI---- 402

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                            +    + ++ +   T       + +  +    +     +D+  
Sbjct: 403 ---------------DEVYHHFNFKYHIELSTRPEDSMGTDEEWNMATEALRLAVEDLKI 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H E   DSL    +     ++    F    ++     A + G
Sbjct: 448 PYVINEGDGAFYGPKLDFHLE---DSLGRTWQCGTIQLD----FQLPQRF----EAEYIG 496

Query: 305 ADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            DG  H   +    +     R +  +IE                                
Sbjct: 497 PDGNRHRPIVIHRVVLGSIERFIGILIEHLAGKFPTWLAPVQVRILSI-------SDNQN 549

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             C ++ A L   G    +DD  E+IG +   A +   P  +I+G + +++ +V ++ R 
Sbjct: 550 SYCSELLAELKNAGIRAEFDDRNEKIGFKVRAAQVEKIPYMLIIGDQEMNEHRVSLRLRD 609

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                 +   E I+      ++ R
Sbjct: 610 RQENIQLPTAEFISKVVAEIADRR 633


>gi|71275167|ref|ZP_00651454.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Dixon]
 gi|170731158|ref|YP_001776591.1| threonyl-tRNA synthetase [Xylella fastidiosa M12]
 gi|238687955|sp|B0U5E3|SYT_XYLFM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71163976|gb|EAO13691.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Dixon]
 gi|167965951|gb|ACA12961.1| threonyl-tRNA synthetase [Xylella fastidiosa M12]
          Length = 635

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 141/438 (32%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   +     RD         L    + +   G+  W P G      +   IR     +G
Sbjct: 233 YMQRLQDAEKRDHRKIGKAQDLF--HLQEEGPGLVFWHPKGWVIWQTIENYIRRVYRNSG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y + M    D   +     P +      +F   + SY
Sbjct: 291 YGELRCPQILDVSLWQKSGHWDNYKENMF-FTDSEKRTYAVKPMNCPGHVQVFNQGLHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F  T    +          L++
Sbjct: 350 RDLPIRYGEFGACHRNEPSGALHGLLRVRGFTQDDGHIFC-TEAQIEAEVTAFHRQALQV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G ++I ++    P                           D    +          
Sbjct: 409 YADFGFENIQIKIALRPDKR-----------------LGDSLSWDKAEAALRAALSACEV 451

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L D++    ++    ++       G        A +  
Sbjct: 452 EWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTIQVDFMMPGRLG--------AEYVD 500

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               + H V +    +G+M     ++    +    IWP  +AP ++ + NI        +
Sbjct: 501 ERSQRRHPVMLHRAIVGSMERFIGILI---EHYAGIWPTWLAPVQVVIANIT---DAQYE 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E+++  L   G  V  D   E+IG +     L   P  ++VG +   +  V ++    
Sbjct: 555 YAEQVHKALLNQGFRVNIDLRNEKIGYKIREHTLQRVPYLLVVGDREKENGTVAVRTCSR 614

Query: 424 GIREDMSLEEVINYASHR 441
                MS+   +      
Sbjct: 615 EDLGAMSISAFVERLQTE 632


>gi|297588366|ref|ZP_06947009.1| threonine--tRNA ligase [Finegoldia magna ATCC 53516]
 gi|297573739|gb|EFH92460.1| threonine--tRNA ligase [Finegoldia magna ATCC 53516]
          Length = 634

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 162/443 (36%), Gaps = 39/443 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L +  I +   G   + P G   L+ +   ++E+    
Sbjct: 230 EYLERMEEAKKRDHRKIGKEMGLFS--IQEEGPGFPFFHPNGMVVLNELEKFLKEQLLDR 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  ++  P + + DLW +SG +D Y + M      +       P +      +++  + S
Sbjct: 288 GYGQIKTPLILNEDLWHQSGHWDHYKENM-YFTQIDGDDYAIKPMNCPGSILVYKDELHS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++    R EL     G+ R R F+  DA+ F L PE  +    K+      
Sbjct: 347 YRELPIKVAELGQVHRHELSGALHGLFRVRTFVQDDAHVFCL-PEQIEEEVTKIIDFCDY 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I+ + G K   +   + P     S E                   D  I S  +  +   
Sbjct: 406 IYSKFGFKYE-VELSTRPEDSMGSDE-----------------DWDLAINSLKSALEHKG 447

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D H E   D++    +     ++    F    ++ +   A+  
Sbjct: 448 LEYKINEGDGAFYGPKIDFHLE---DAIGRTWQCGTIQLD----FQMPERFDMTYIAS-- 498

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               K     +    +G+      ++    +     +P  ++P ++ ++ I        D
Sbjct: 499 -DGSKKRPAMIHRAILGSEERFMGILI---EHYAGKFPLWLSPIQVEILPISDK---FND 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  ++   G  V  DD  E+IG +   + L      +I+G   + +++V ++ R  
Sbjct: 552 YAYELQQKMKARGLRVKVDDRSEKIGLKIRESQLKKVNYSLIIGQNEIDNNEVSVRKRDL 611

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
           G     + +E I+     + N +
Sbjct: 612 GDVGSKNTDEFIDELVDEYQNRK 634


>gi|196043419|ref|ZP_03110657.1| threonyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|196025728|gb|EDX64397.1| threonyl-tRNA synthetase [Bacillus cereus 03BB108]
          Length = 639

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 155/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    S       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEASLENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKVPYILVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               + + L+  +        N +
Sbjct: 616 EEKSDVIELDMFVESIKVEIKNRK 639


>gi|254785039|ref|YP_003072467.1| proline--tRNA ligase [Teredinibacter turnerae T7901]
 gi|259511626|sp|C5BPN9|SYP_TERTT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|237684457|gb|ACR11721.1| proline--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 574

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 169/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +   +E P DAE+ SHKLMLR G+I + + G+Y+WLPLG + L  V  I+R+E
Sbjct: 1   MRASQYLIATQKETPADAEVISHKLMLRAGLIRKMASGLYNWLPLGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +P +Q A++W ESGR+  YG E+LR+ DR+D+A   GPTHEEV+TD+ R+
Sbjct: 61  MDKSGAQEVLMPVVQPAEIWQESGRWQQYGPELLRINDRHDRAFCLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF ++ E  + +Y+ M  +
Sbjct: 121 EVKSYKQLPLNFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHISQESLQETYDVMHRT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R+GL+  P+ A++G IGG  SHEF VLAD+GE  +  S D  DF    E
Sbjct: 181 YCNIFDRIGLQYRPVLADTGSIGGSASHEFHVLADSGEDDIAFSSD-SDFAANVE 234



 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 68/194 (35%), Positives = 107/194 (55%), Gaps = 4/194 (2%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A Y+   D+ N  + D  P  K      RGIEVGHIF  GTKYS  M AT    +GKD  
Sbjct: 380 ASYSRVEDLRNVVVGDPSPCGKGTIEIKRGIEVGHIFQLGTKYSAAMKATVLDENGKDVT 439

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYA 370
           + MG YGIG  R+VA+ IE +HD  GIIWPD++APF+++++ I        ++ACE +Y 
Sbjct: 440 MTMGCYGIGVSRIVASAIEQNHDDNGIIWPDAIAPFQLAIVPINMHKSDAVKEACETLYD 499

Query: 371 RLSKVGCDVFW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +    G DV   D+   ++G+  A  +L+G P +V++G + +    +E K R     +++
Sbjct: 500 QCQTAGIDVLLMDEPKARLGAMLADVELVGIPHRVVIGDRGLEQGNIEYKGRRDAESQEV 559

Query: 430 SLEEVINYASHRFS 443
           +   +  +   + +
Sbjct: 560 AAASLFEFLREKIA 573


>gi|228933677|ref|ZP_04096525.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826004|gb|EEM71789.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 639

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 156/444 (35%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G K   +   + P                           +    S       + 
Sbjct: 410 VYKTFGFKYE-VELSTRPEDS-----------------MGDDKLWEQAEASLENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               + + L+  +       +N +
Sbjct: 616 EEKSDVIELDMFVESMKEEINNRK 639


>gi|119774900|ref|YP_927640.1| threonyl-tRNA synthetase [Shewanella amazonensis SB2B]
 gi|166225496|sp|A1S6G4|SYT_SHEAM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119767400|gb|ABL99970.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Shewanella
           amazonensis SB2B]
          Length = 642

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 144/441 (32%), Gaps = 40/441 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + + + G+  W   G      +   IR + +    
Sbjct: 233 LARLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFRELETFIRHKLSEYDY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 291 QEVKGPFMMDRVLWERSGHWDKYADAMFT-TASENREYAIKPMNCPGHVQIFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F    +  +     + + Y    
Sbjct: 350 DLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVQEEVSACIRMVYDTYS 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P                        D  D    +     +     
Sbjct: 410 T-FGFENIVVKLSTRPEKR-----------------IGDDDMWDRAESALIEALNANGIA 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I+    A Y    +     L D L    +     ++       G        AT+   
Sbjct: 452 FEILPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPGRLG--------ATYVAE 500

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D        +    +G++     ++    +     +P  +AP +  ++NI        D 
Sbjct: 501 DNARQTPVMIHRAILGSLERFIGILI---EEYAGRFPAWLAPVQAVVMNITDK---QADY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E++     + G     D   E+IG +     L   P  ++VG + + + ++ ++ R   
Sbjct: 555 VEELVKFFKEQGIRASQDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENREIAVRTRDGK 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS++  +     + S+ 
Sbjct: 615 DLGKMSIDAFVASVKEQISHR 635


>gi|124486137|ref|YP_001030753.1| hypothetical protein Mlab_1319 [Methanocorpusculum labreanum Z]
 gi|124363678|gb|ABN07486.1| threonyl-tRNA synthetase [Methanocorpusculum labreanum Z]
          Length = 586

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 149/442 (33%), Gaps = 42/442 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL + +E  R D      ++ L   M      G   +LP G    +++    RE     G
Sbjct: 183 FLKLQEEAERRDHRKIGKEMKLF--MFSDEGPGFPFFLPNGMIVRNSLLDYWRELHAENG 240

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + +  LW  SG +D Y   M      +D+     P +      ++ +   SY
Sbjct: 241 YQEISTPLIMNRCLWETSGHWDHYKDNM-YATCIDDEDYCIKPMNCPGGVMVYANEPHSY 299

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ L  R EL+    G+ R R F   DA+ F    + S      +      +
Sbjct: 300 RELPMRLAELGLVHRHELKGTLHGLFRVRCFTQDDAHIFMRKNQISDE-IAGVVRLINEV 358

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G +   +   + P     S E                   +          D +  
Sbjct: 359 YTKFGFEY-FLELSTRPENSMGSDE-----------------DWEAATNGLKDALDLLKL 400

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +I E   A Y    D H   L D L    +     ++      F         A    
Sbjct: 401 PYTINEGDGAFYGPKIDFH---LKDCLGRTWQCGTIQLDFQMPINFDL-------AYVDE 450

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            D +   + +     G++     ++    +     +P  +AP +  ++ +    +     
Sbjct: 451 NDERQRPIMIHRVCFGSIERFIGILT---EHFAGRFPVWLAPMQAKVLLVTKKSES---Y 504

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            E+IYA L         D+  E+IG     A      P  +I+G K + D  V I+ R  
Sbjct: 505 AEEIYAMLKDAKIRCELDNRNEKIGYMIRQAHYTERVPYMIIIGEKELEDHTVSIRTRD- 563

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M+ EE +   +    N 
Sbjct: 564 GKTVTMTPEEFLTKITSEIKNR 585


>gi|19386908|gb|AAL87030.1|AF332624_1 threonyl-tRNA-synthetase [Azotobacter vinelandii]
          Length = 461

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 148/447 (33%), Gaps = 41/447 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R  Q   G
Sbjct: 52  YIQRIEEAEKRDHRKLGKRLDLF--HTQEEAPGMVFWHPNGWTVYQVLEQYMRAVQRENG 109

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y + M    +   +     P +      ++   +KSY
Sbjct: 110 YLEIKTPQVVDRVLWEKSGHWANYAENMFT-TESESRDYAIKPMNCPCHVQVYNQGLKSY 168

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S         ++
Sbjct: 169 RELPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEEQMQAES-AAFIKLTRQV 227

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D    +     +    
Sbjct: 228 YADFGFQDIQLKLSTRPERRVGSGE-----------------LWDRAEEALAAALESAGL 270

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++       G        A +  
Sbjct: 271 PYELQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLDFNLPVRLG--------AEYVS 319

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  + H V +    +G+      ++   ++     +P  +AP +  ++NI        +
Sbjct: 320 ENNERQHPVMLHRAILGSFERFIGILIEHYE---GAFPAWLAPTQAVIMNITDK---QGE 373

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 374 FALEVERTLNQGGFRAKCDLRNEKIGFKIREHTLLKVPYLLVIGDREVETHSVAVRTREG 433

Query: 424 GIREDMSLEEVINYASHRFSNN-RPVL 449
                M +E+     +   +   R  L
Sbjct: 434 VDLGTMPVEQFREMLAQAVARRGRQEL 460


>gi|295696884|ref|YP_003590122.1| threonyl-tRNA synthetase [Bacillus tusciae DSM 2912]
 gi|295412486|gb|ADG06978.1| threonyl-tRNA synthetase [Bacillus tusciae DSM 2912]
          Length = 641

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/445 (19%), Positives = 156/445 (35%), Gaps = 41/445 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD       L L        + G+   LP G    + +   +RE  N  
Sbjct: 236 EYLRRVEEARKRDHRRVGRDLELF--FFADEAPGMPFLLPKGMVIRNELERFMREFLNEY 293

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P L    LW  SG +D Y + M    + +++     P +       F+  ++S
Sbjct: 294 DYEEVKTPILMDRVLWERSGHWDHYKENM-YFTEVDEREFALKPMNCPGHALTFKHRVRS 352

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +  L  R EL     G++R REF   DA+ F    +     +  M     R
Sbjct: 353 YRDLPIRMAEFGLLHRHELSGALHGLLRVREFTQDDAHLFVRPDQIQDEVFACM-DLIDR 411

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G     +   + P     S E                   +          +   
Sbjct: 412 VYAAFGFPY-RVELSTRPENSTGSDE-----------------LWEAATEGLRKALESRG 453

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D H   + DSL  + +     ++    F    K+      T+ 
Sbjct: 454 LEYQINEGDGAFYGPKIDFH---VKDSLGRSHQCGTIQLD----FQMPEKFD----LTYV 502

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G D + H    +    +G+      ++   ++G   +W   +AP +  ++ I A      
Sbjct: 503 GEDNERHRPVMIHRAVLGSFERFFGLLIEHYNGAFPVW---LAPVQARVLTIGAGH---L 556

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++ +R   +G  V  D   E+IG +   A +   P  +++G +     +V ++ R 
Sbjct: 557 PYAKEVQSRARAMGLRVEVDGRAEKIGYKVREAQVQKIPYMLVIGDQEAQTGEVSVRKRG 616

Query: 423 TGIREDMSLEEVINYASHRFSNNRP 447
            G     S EEV+   +       P
Sbjct: 617 QGDLGRRSAEEVLVAIAEEARTRTP 641


>gi|194017082|ref|ZP_03055694.1| threonyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194010950|gb|EDW20520.1| threonyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 646

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/433 (19%), Positives = 161/433 (37%), Gaps = 34/433 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++ R G 
Sbjct: 238 LRLLEEAKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKEVRLGY 296

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + +L+  SG +  Y ++M  + + +++ ++  P +      I+++   SYR
Sbjct: 297 EHVYTPVLANVELYKTSGHWAHYQEDMFPVMEMDNEDLVLRPMNCPHHMMIYKNEPHSYR 356

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F    +        +      ++
Sbjct: 357 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKDEFIRTVR-LIEEVY 415

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
              GL     R                  D  +T+ +   D M     S      D++  
Sbjct: 416 QDFGLNDYTFRLS--------------YRDPEDTEKYFDDDAMWNKAQSMLKDAMDELGH 461

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  +L + + +S   ++    F    ++      T+ G
Sbjct: 462 DYYEAEGEAAFYGPKLDV---QVKTALGKEETLSTVQVD----FLLPERFD----LTYIG 510

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGK H   +     G +  +   +    +      P  +AP +  +I +     V  D 
Sbjct: 511 EDGKHHRPVVIHR--GVVSTMERFVAFLIEEYKGALPTWLAPVQFQVIPVSP--SVHLDY 566

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+  RL   G  V  D   E+IG +   A +   P  ++VG +   +  V ++     
Sbjct: 567 AKKVQERLQLEGLRVELDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKYGEQ 626

Query: 425 IREDMSLEEVINY 437
             E M LE  + +
Sbjct: 627 DSETMDLEAFVKH 639


>gi|28199783|ref|NP_780097.1| threonyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182682533|ref|YP_001830693.1| threonyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|32130161|sp|Q87AB2|SYT_XYLFT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238691115|sp|B2I9P8|SYT_XYLF2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28057904|gb|AAO29746.1| threonyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182632643|gb|ACB93419.1| threonyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|307578811|gb|ADN62780.1| threonyl-tRNA synthetase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 635

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 141/438 (32%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   +     RD         L    + +   G+  W P G      +   IR     +G
Sbjct: 233 YMQRLQDAEKRDHRKIGKAQDLF--HLQEEGPGLVFWHPKGWVIWQTIENYIRRVYRNSG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y + M    D   +     P +      +F   + SY
Sbjct: 291 YGELRCPQILDVSLWQKSGHWDNYKENMF-FTDSEKRTYAVKPMNCPGHVQVFNQGLHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F  T    +          L++
Sbjct: 350 RDLPIRYGEFGACHRNEPSGALHGLLRVRGFTQDDGHIFC-TEAQIEAEVTAFHRQALQV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G ++I ++    P                           D    +          
Sbjct: 409 YADFGFENIQIKIALRPDKR-----------------LGDSLSWDKAEAALRAALSACEV 451

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L D++    ++    ++       G        A +  
Sbjct: 452 EWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTIQVDFMMPARLG--------AEYVD 500

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               + H V +    +G+M     ++    +    IWP  +AP ++ + NI        +
Sbjct: 501 ERSQRRHPVMLHRAIVGSMERFIGILI---EHYAGIWPTWLAPVQVVIANIT---DAQYE 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E+++  L   G  V  D   E+IG +     L   P  ++VG +   +  V ++    
Sbjct: 555 YAEQVHKALLNQGFRVNIDLRNEKIGYKIREHTLQRVPYLLVVGDREKENGTVAVRTCSR 614

Query: 424 GIREDMSLEEVINYASHR 441
                MS+   +      
Sbjct: 615 EDLGAMSISTFVERLQTE 632


>gi|260596616|ref|YP_003209187.1| prolyl-tRNA synthetase [Cronobacter turicensis z3032]
 gi|260215793|emb|CBA28231.1| Prolyl-tRNA synthetase [Cronobacter turicensis z3032]
          Length = 572

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 129/235 (54%), Positives = 167/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q A+LW ESGR++ YG E+LR  DR D+A + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPAELWQESGRWEQYGPELLRFVDRGDRAFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQESLQQTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL   P++A++G IGG  SHEF VLA +GE  +  S    DF    E
Sbjct: 181 YSKIFTRMGLDFRPVQADTGSIGGSASHEFQVLAQSGEDDIVFSDT-SDFAANIE 234



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/183 (38%), Positives = 113/183 (61%), Gaps = 3/183 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSDALKASVQGEDGRNQVLTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD +GI+WPD++APF+++++ +  H     ++  EK+YA L   
Sbjct: 444 YGIGVTRVVAAAIEQNHDDRGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYAELRAK 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P  V++G + + + ++E K+R  G ++ +   +++
Sbjct: 504 GIDVLMDDRKERPGVMFADMELIGIPHTVVIGDRNLDNDEIEYKYRRDGEKKMIKTGDIL 563

Query: 436 NYA 438
           +Y 
Sbjct: 564 DYL 566


>gi|37526560|ref|NP_929904.1| threonyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|73919813|sp|Q7N3P6|SYT_PHOLL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|36785991|emb|CAE15043.1| threonyl-tRNA synthetase (threonine--tRNA ligase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 642

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 141/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   + +   RD      +L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LNTYLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    +W  +G +++YG+ M       ++     P +      IF   +
Sbjct: 287 EYQYQEVKGPFMMDRVMWERTGHWENYGEHMFT-TSSENREYCVKPMNCPGHIQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +  +   +      
Sbjct: 346 KSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIHRE-VSSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G + I ++  + P     + E    A+                  S      +
Sbjct: 405 YDVYSTFGFEKIVVKLSTRPEKRIGTEEQWNQAE-----------------ESLAAALQE 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y    +     L D L    +     ++    F    + S    A+
Sbjct: 448 NGVQFEYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----AS 496

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G + +    V +    +G++     ++   + G    W           + +      
Sbjct: 497 YVGENNERKVPVMIHRAVLGSLERFIGILTEEYAGFFPTW------IAPQQVVVMNITDS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +++  +L   G     D   E+IG +     L   P  ++ G K V   KV ++ 
Sbjct: 551 QADYVQELVKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGEKEVESGKVSVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       + +   I        + 
Sbjct: 611 RRGKDLGSIDVNGFIEKLLIEIRSR 635


>gi|329893675|ref|ZP_08269809.1| Prolyl-tRNA synthetase [gamma proteobacterium IMCC3088]
 gi|328923602|gb|EGG30914.1| Prolyl-tRNA synthetase [gamma proteobacterium IMCC3088]
          Length = 571

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 121/235 (51%), Positives = 159/235 (67%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +  L+E P DAE+ SH+LMLR GMI + + G+Y+W+PLG K L  V  I+REE
Sbjct: 1   MRTSQTLISTLKETPADAEVISHRLMLRAGMIKKLASGLYTWMPLGLKVLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE+ +P +Q A+LW ESGR+  YG E+LR+ DR+ +    GPTHEEV+TDI R+
Sbjct: 61  MDAAGAIELLMPVVQPAELWQESGRWAQYGPELLRMHDRHTREFCLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF MKDAYSF +     + +Y  M  +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFTMKDAYSFHIDQASLEETYWVMHRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  +F RLGL   P+ A++G IGG  SHEF VLAD+GE  +    +  DF    E
Sbjct: 181 YSNVFDRLGLMYRPVEADTGSIGGSHSHEFHVLADSGEDDIAF-SNESDFAANVE 234



 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 112/189 (59%), Gaps = 3/189 (1%)

Query: 257 AATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+      D  P+ K +    RGIEVGHIF  G KYS  M+A    A+GK   + M
Sbjct: 380 AHIADLREVVEGDPSPDGKGILEIKRGIEVGHIFQLGQKYSEAMNAQVLDANGKAQTLSM 439

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  R+VAA IE +HD KGIIWPD++AP++++++ +     +    A E +YA+L+
Sbjct: 440 GCYGIGISRIVAAAIEQNHDDKGIIWPDAMAPYQVAIVPLNMQKSEAVAQAAETLYAQLT 499

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V  DD  E+ G +FA  +L+G P ++++G + +++ ++E KHR     E++++ +
Sbjct: 500 DAGIEVLLDDRNERPGIKFADMELIGIPHRIVIGDRSLAEGQLEYKHRAAPDSENIAVTD 559

Query: 434 VINYASHRF 442
            +     + 
Sbjct: 560 TLTVLMSKL 568


>gi|301170119|emb|CBW29723.1| threonyl-tRNA synthetase [Haemophilus influenzae 10810]
          Length = 643

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 145/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +KY   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAKYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 QYDYQEVKGPFMMDRVLWEKTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P     S E                   D            
Sbjct: 405 YDIYSTFGFTNIAVKLSTRPENRIGSDE-----------------MWDRAEAGLAAALAH 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                AT
Sbjct: 448 NGLEYEIQEGEGAFYGPKIEF---ALRDCLGREWQCGTVQLDFALPGRLD--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G   +W        I++         
Sbjct: 497 YVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPVWLAPTQAVVINIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE      ++  + 
Sbjct: 611 RKGADLGTFTVEEFAEILKNQVRSR 635


>gi|116747872|ref|YP_844559.1| threonyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
 gi|116696936|gb|ABK16124.1| threonyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
          Length = 644

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 83/440 (18%), Positives = 153/440 (34%), Gaps = 41/440 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      +L L +    +   G+  + P G      + A  + E  R
Sbjct: 229 KKYLHFLEEAQKRDHRRLGRELDLFS-FSDEVGAGMVIYHPRGALLRHILEAFEKREHLR 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  PTL   +LW  SG ++ Y + M    +  +++    P +      I++S ++
Sbjct: 288 RGYHIVMGPTLLKTELWKRSGHFEHYRENM-YFTEIEEQSYGIKPMNCLAHMLIYKSRLR 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  ++++    R E      G+ R R+F   DA+      +        +    +
Sbjct: 347 SYRDLPLRYFELGTVHRHERSGVLHGLTRVRQFTQDDAHILCTPEQLHGE-IQSIIDFVI 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G     M   + P     S E                   +    +     +D 
Sbjct: 406 EVMGIFGFN-HEMEISTRPAKSIGSDE-----------------DWERATSALIDALEDK 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                + E   A Y    DV   KL D+L    + +    +    F    ++      T+
Sbjct: 448 GIPYQVCEGEGAFYGPKIDV---KLRDALDRKWQCATIQCD----FTLPDRFD----LTY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG  H    +    +G++     V+     G    W   V    +++          
Sbjct: 497 VGVDGNRHRPVMVHRVVLGSLERFIGVLVEHFAGAFPTWLAPVQAIVVTVT------DGQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +    +Y RL + G  V  DD  E++G +   A +   P  +++G + V+   V  + R
Sbjct: 551 IEFARNMYDRLREAGVRVELDDRNEKLGYKIREAQMQKVPYMLVIGDREVAAGGVAPRRR 610

Query: 422 LTGIREDMSLEEVINYASHR 441
                E ++ E         
Sbjct: 611 DGTQLELIAPEAFAAMIQKE 630


>gi|219666254|ref|YP_002456689.1| threonyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
 gi|219536514|gb|ACL18253.1| threonyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 639

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 86/447 (19%), Positives = 158/447 (35%), Gaps = 42/447 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +  +H    G   + P G    + +    R+E  + G
Sbjct: 232 YLFKLEEAKRRDHRKLGVELDLFS--LHDEGPGFPFFHPKGMVLRNQLEDFWRQEHRKRG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S +LW  SG +D Y   M      +D+     P +      +++  ++SY
Sbjct: 290 YHEIKTPIILSRNLWENSGHWDHYKDNMYT-TKIDDEDFAVKPMNCPGGMIMYKQKLRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G++R R F   DA+ F L P   K   + +     R 
Sbjct: 349 RDLPLRMGELGLVHRHELSGALNGLLRVRNFTQDDAHIFML-PSQIKAEISGVIDLVDRF 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G                   E+ V   T       + +  +    +     +    
Sbjct: 408 YKVFG------------------FEYHVELSTRPENSMGADETWEMATNALQEALEAKGV 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D H   L D L    +     ++    F    K+      T+ G
Sbjct: 450 NYKINPGDGAFYGPKIDFH---LRDCLGRTWQCGTIQLD----FQMPEKFD----LTYIG 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++    A++   + G    W   +AP ++ ++ I    +   D
Sbjct: 499 EDGQKHRPVMIHRVVYGSIERFIALLTEHYAGAFPTW---LAPVQVRVLPI---SERHED 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + I  RL+ +      D+  E+I  +   A     P  ++VG +      V ++    
Sbjct: 553 YAQDIVRRLNDLDIRAEVDERREKISYKIREAQTHKIPFALVVGDQEAETDTVAVRRYGQ 612

Query: 424 GIR-EDMSLEEVINYASHRFSNNRPVL 449
               E +S+ E I        + + ++
Sbjct: 613 ANAGEKLSVAEFIALIQEEICSKKQLV 639


>gi|329905673|ref|ZP_08274169.1| Prolyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547550|gb|EGF32358.1| Prolyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 578

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 159/224 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SH+LM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MRASRFFISTLKEAPADAEIVSHQLMMRAGMIKRLGSGIYTYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR+  YG E++R+ DR+ +  I  PT EEV+TDI R+
Sbjct: 61  MNRAGAVELLMPVVQPAELWQETGRWQEYGAELMRVKDRHGRDFIIQPTSEEVITDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FY +Q KFRDE RPRFG+MR REF MKDAYSFD  P G K SY  MF +
Sbjct: 121 EIKSYRQLPVNFYHVQTKFRDERRPRFGLMRGREFTMKDAYSFDRDPAGMKQSYQIMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF R GL   P+ A++G IGG  SHEF V+ADTGE  +   
Sbjct: 181 YVRIFTRFGLGFRPVAADNGAIGGSGSHEFHVIADTGEDAIVYC 224



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/171 (40%), Positives = 100/171 (58%), Gaps = 3/171 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P   + D+ N    D+ P+ K V    RGIEVGH+F  GT+YS  M ATF   +GK   +
Sbjct: 386 PEPVSFDLRNVVAGDASPDGKGVLAIQRGIEVGHVFQLGTRYSEDMKATFLDENGKPQLL 445

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  R++ A IE + D KGIIWP S+APF+I L  +    ++  + A + + A 
Sbjct: 446 QMGCYGIGVTRILGAAIEQNFDDKGIIWPVSIAPFEIVLCPMGYDRNEAVKTAADTLLAD 505

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           L   G D   DD GE+ G+ FA  +L+G P ++++G + + D K+E + R 
Sbjct: 506 LLAAGIDAILDDRGERPGAMFADWELIGVPHRIVIGDRGLKDGKLEYQGRR 556


>gi|320109353|ref|YP_004184943.1| threonyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
 gi|319927874|gb|ADV84949.1| threonyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
          Length = 676

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 151/439 (34%), Gaps = 37/439 (8%)

Query: 11  LQENP-RDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           L+E   RD  +   +L L +  I + +  G+  W P G      +   +R+E  R G   
Sbjct: 267 LEEIKARDHRVLGKQLDLFS--IQELAGSGLIFWHPNGAIIRKTMEDWMRDECLRRGYDL 324

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +   +LW  SG    YG+ M    + +D      P +      I+++  KSYR+L
Sbjct: 325 VVTPHVMRRELWQISGHEGFYGQNMYAPMELDDAEYRLKPMNCPGHILIYKNSPKSYRDL 384

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  + ++   +R E      G++R R F   DA+ F  TP   +            + H+
Sbjct: 385 PVRYAELGNVYRYERSGTMHGLLRVRGFTQDDAHIFC-TPAQIEDEVVACVEFAEEVLHK 443

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   +                             +  +    T  +       
Sbjct: 444 FGFNEFKVELST-------------WDPNDAKHYVGDPKDWELAVNGLKTALNRKNIPYK 490

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
            +    A Y    DV   KL D L    ++S    +    F    ++       + G DG
Sbjct: 491 EIPGEAAFYGPKIDV---KLVDVLGRLWQLSTVQFD----FNLPRRF----ELEYTGEDG 539

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H    +     G++     V+    +     +P  +AP +I L+ I    +      E
Sbjct: 540 EKHQPVMVHRALFGSVERFFGVLI---EHYAGAFPLWLAPIQIGLVPI---SEKHTAYAE 593

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L  +G  V  D   E++ ++     L   P  +I+G K      V ++ R  G  
Sbjct: 594 TVKKELEAIGLRVTLDARNEKMNAKIRDLTLQKVPFVLIMGDKEAEAKAVSVRTRGKGDE 653

Query: 427 EDMSLEEVINYASHRFSNN 445
               L + +  A +     
Sbjct: 654 GSTPLADFLARAKNLLETK 672


>gi|226945724|ref|YP_002800797.1| prolyl-tRNA synthetase [Azotobacter vinelandii DJ]
 gi|259511575|sp|C1DRG4|SYP_AZOVD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226720651|gb|ACO79822.1| prolyl-tRNA synthetase [Azotobacter vinelandii DJ]
          Length = 571

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 130/282 (46%), Positives = 183/282 (64%), Gaps = 10/282 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DA + SH+LMLR GMI + + G+Y+WLPLG +AL    AI+REE
Sbjct: 1   MRTSQYLLSTLKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPLGLRALRKAEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E+ +P +Q A+LW ESGR++ YG E+LR+ DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MDKAGALEVLMPAIQPAELWQESGRWEQYGPELLRIRDRHAREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REFLMKDAYSF LT E  + +Y++M  +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFHLTQESLQETYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL+  P++A++G IGG  SHEF VLA +GE  +  S    D+    E  +  
Sbjct: 181 YCNIFSRLGLEFRPVQADTGSIGGTGSHEFHVLAASGEDDIAFSDS-SDYAANIEKAEA- 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                   + +  A  AA+ ++      D+   ++ V   G+
Sbjct: 239 --------IPREKARAAASEELRLVDTPDARTIDELVRQFGL 272



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 69/192 (35%), Positives = 109/192 (56%), Gaps = 4/192 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  M+    G +GK   +
Sbjct: 378 PLPQVADLRNVVEGDPSPDGQGSLVIKRGIEVGHIFQLGTKYSEAMNCKVLGENGKPVTL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE ++D +GI+WP ++APF+I+L+ +K      R+A +++YA L
Sbjct: 438 IMGCYGIGVSRVVAAAIEQNYDERGILWPQALAPFQIALVPMKYESAAVREATDRLYAEL 497

Query: 373 SKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
              G +V  DD  +    G +FA  +L+G P +++V  + +++  +E K R     + + 
Sbjct: 498 VAAGYEVLLDDRDKKTSPGVKFADMELIGIPHRIVVSERGLAEGTLEYKGRRETEVQAIP 557

Query: 431 LEEVINYASHRF 442
             ++I +  +R 
Sbjct: 558 AADLITFLGNRI 569


>gi|315225228|ref|ZP_07867045.1| threonine--tRNA ligase [Capnocytophaga ochracea F0287]
 gi|314944911|gb|EFS96943.1| threonine--tRNA ligase [Capnocytophaga ochracea F0287]
          Length = 646

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/437 (18%), Positives = 152/437 (34%), Gaps = 36/437 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T   ++  +G+  WLP G    + + A +R+ Q + G  ++  P
Sbjct: 237 AKKRDHRKLGKELELFT-FSNKVGQGLPLWLPKGAALRERLEAFLRKAQKQAGYEQVVTP 295

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG +D YGK+  +        +  +  P +     +I+ SH  SY++LP 
Sbjct: 296 HIGHKNLYVTSGHWDKYGKDSFQPIATPNEGEEYLLKPMNCPHHCEIYNSHPWSYKDLPK 355

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +    +R E      G+ R R F   DA+ F  TPE     +  +    L +F  LG
Sbjct: 356 RFAEFGTVYRYEQSGELHGLTRVRCFTQDDAHIFC-TPEQLDDEFKHVIDLVLYVFGSLG 414

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +   +                      T+   S +       +      +      I 
Sbjct: 415 FDNFTAQVSLRD-------------PENPTKYIGSDENWAKAENAIINAAKEKGLSYVIE 461

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D     + D+L  + ++    ++                  +KGAD + 
Sbjct: 462 TGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERFDLWYKGADNEM 510

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H    +     G+M    A++     G   +W         S   + +  +   +  +K+
Sbjct: 511 HRPVMIHRAPFGSMERFVAILLEHTAGNFPLW------LNPSQAIVLSLSEKYENYAQKV 564

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L         D+  E +G +   A+    P  +IVG     +  V ++ R       
Sbjct: 565 LRLLENSDIRTLIDNRAETMGKKIREAETKKIPYMLIVGENEEKEGTVSVRKRGGEDLGS 624

Query: 429 MSLEEVINYASHRFSNN 445
           MS+E      +   + +
Sbjct: 625 MSVEAFAKLINDEINKS 641


>gi|293364941|ref|ZP_06611658.1| threonine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307703194|ref|ZP_07640140.1| threonyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
 gi|291316391|gb|EFE56827.1| threonine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307623269|gb|EFO02260.1| threonyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
          Length = 647

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 157/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S+++ +        N 
Sbjct: 619 GQKETQTVSVDDFVQAILADIVNK 642


>gi|89892986|ref|YP_516473.1| threonyl-tRNA synthetase [Desulfitobacterium hafniense Y51]
 gi|89332434|dbj|BAE82029.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 641

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 86/447 (19%), Positives = 158/447 (35%), Gaps = 42/447 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +  +H    G   + P G    + +    R+E  + G
Sbjct: 234 YLFKLEEAKRRDHRKLGVELDLFS--LHDEGPGFPFFHPKGMVLRNQLEDFWRQEHRKRG 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S +LW  SG +D Y   M      +D+     P +      +++  ++SY
Sbjct: 292 YHEIKTPIILSRNLWENSGHWDHYKDNMYT-TKIDDEDFAVKPMNCPGGMIMYKQKLRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++ L  R EL     G++R R F   DA+ F L P   K   + +     R 
Sbjct: 351 RDLPLRMGELGLVHRHELSGALNGLLRVRNFTQDDAHIFML-PSQIKAEISGVIDLVDRF 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G                   E+ V   T       + +  +    +     +    
Sbjct: 410 YKVFG------------------FEYHVELSTRPENSMGADETWEMATNALQEALEAKGV 451

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D H   L D L    +     ++    F    K+      T+ G
Sbjct: 452 NYKINPGDGAFYGPKIDFH---LRDCLGRTWQCGTIQLD----FQMPEKFD----LTYIG 500

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++    A++   + G    W   +AP ++ ++ I    +   D
Sbjct: 501 EDGQKHRPVMIHRVVYGSIERFIALLTEHYAGAFPTW---LAPVQVRVLPI---SERHED 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + I  RL+ +      D+  E+I  +   A     P  ++VG +      V ++    
Sbjct: 555 YAQDIVRRLNDLDIRAEVDERREKISYKIREAQTHKIPFALVVGDQEAETDTVAVRRYGQ 614

Query: 424 GIR-EDMSLEEVINYASHRFSNNRPVL 449
               E +S+ E I        + + ++
Sbjct: 615 ANAGEKLSVAEFIALIQEEICSKKQLV 641


>gi|326803832|ref|YP_004321650.1| threonine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651446|gb|AEA01629.1| threonine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 651

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 156/440 (35%), Gaps = 33/440 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD      +L L   MI  +  +G+  WLP G      V   I +++ + G  
Sbjct: 238 RREEAKERDHRKIGKELDLF--MIDPKTGQGLPFWLPNGATIRRQVERYIVDKEVQAGYQ 295

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYR 126
            +  P +   DL+  SG +D Y  +M    D  D    +  P +      ++++ + SYR
Sbjct: 296 HVYTPIMADVDLYKTSGHWDHYSDDMFPTMDFEDGESFVLRPMNCPHHIRVYQNKVHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++ +  R E      G+ R RE  + D++ F    +         F S LR  
Sbjct: 356 ELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDSHIFVRLDQIKDE-----FKSILRFM 410

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                              D  +           + F   +  +          D++   
Sbjct: 411 QDAYHDFNIT---------DYRYRLSYRDPKDTKKYFDDDEMWEKAQSMLKEAMDELGLD 461

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  +L   + +S   ++    F    K+      T+ G 
Sbjct: 462 YFEAEGEAAFYGPKLDV---QVKTALGNEETLSTIQLD----FLLPEKFD----VTYVGE 510

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DG++ +  +  +  G +  +   +    +     +P  +AP +  LI +  +     D  
Sbjct: 511 DGQNTHRPVMIHR-GIVSTMERFVAYLIEEYKGAFPTWLAPQQAILIPVNEN--QHADYV 567

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++  R+   G  +  DD  E++G +   A     P Q++ G   + +  V ++   +  
Sbjct: 568 YQVANRMRSEGLRIEVDDRNEKMGYKIREAQTRKVPYQLVFGDNEIENGTVTVRRYGSKK 627

Query: 426 REDMSLEEVINYASHRFSNN 445
            E + L+E IN       + 
Sbjct: 628 TETVDLDEFINMIHAEIDSY 647


>gi|156935287|ref|YP_001439203.1| prolyl-tRNA synthetase [Cronobacter sakazakii ATCC BAA-894]
 gi|166980122|sp|A7MI22|SYP_ENTS8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|156533541|gb|ABU78367.1| hypothetical protein ESA_03144 [Cronobacter sakazakii ATCC BAA-894]
          Length = 572

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 129/235 (54%), Positives = 167/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q A+LW ESGR++ YG E+LR  DR D+A + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPAELWQESGRWEQYGPELLRFVDRGDRAFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQESLQQTYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL   P++A++G IGG  SHEF VLA +GE  +  S    DF    E
Sbjct: 181 YSKIFTRMGLDFRPVQADTGSIGGSASHEFQVLAQSGEDDIVFSDT-SDFAANIE 234



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/183 (38%), Positives = 113/183 (61%), Gaps = 3/183 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSDALKASVQGEDGRNQVLTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD +GI+WPD++APF+++++ +  H     ++  EK+YA L   
Sbjct: 444 YGIGVTRVVAAAIEQNHDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYAELRAK 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P  V++G + + + ++E K+R  G ++ +   +++
Sbjct: 504 GIDVLMDDRKERPGVMFADMELIGIPHTVVIGDRNLDNDEIEYKYRRDGEKKMIKTGDIL 563

Query: 436 NYA 438
           +Y 
Sbjct: 564 DYL 566


>gi|160875442|ref|YP_001554758.1| threonyl-tRNA synthetase [Shewanella baltica OS195]
 gi|189083621|sp|A9L2Q9|SYT_SHEB9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160860964|gb|ABX49498.1| threonyl-tRNA synthetase [Shewanella baltica OS195]
 gi|315267632|gb|ADT94485.1| threonyl-tRNA synthetase [Shewanella baltica OS678]
          Length = 642

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 143/443 (32%), Gaps = 40/443 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +   + +   RD      +L L    + + + G+  W   G      +   IR + N
Sbjct: 229 LSTHLTRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELERFIRRKLN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW  SG +D Y + M       ++     P +      IF   +
Sbjct: 287 QYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFT-TSSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +  +   +      
Sbjct: 346 KSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFCTDSQVQEE-VSACIQMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G ++I ++  + P                           D    +      D
Sbjct: 405 YDTYATFGFENIVVKLSTRPEKR-----------------IGDDAMWDRAEEALKQALRD 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +I+    A Y    +     L D L    +     ++       G        AT
Sbjct: 448 NNIEFTILPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPSRLG--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     ++   + G+   W   +    +++         
Sbjct: 497 YVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGRFPTWLAPMQVVVMNIT------DK 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  E++     + G    +D   E+IG +     L   P  ++VG + + + +V ++ 
Sbjct: 551 QADYVEEVVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R       M LE+       + S
Sbjct: 611 RDGIDLGKMRLEDFATKIHQQIS 633


>gi|126174365|ref|YP_001050514.1| threonyl-tRNA synthetase [Shewanella baltica OS155]
 gi|153000743|ref|YP_001366424.1| threonyl-tRNA synthetase [Shewanella baltica OS185]
 gi|217973356|ref|YP_002358107.1| threonyl-tRNA synthetase [Shewanella baltica OS223]
 gi|166225497|sp|A3D4I2|SYT_SHEB5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225498|sp|A6WNH2|SYT_SHEB8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783536|sp|B8EES6|SYT_SHEB2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|125997570|gb|ABN61645.1| threonyl-tRNA synthetase [Shewanella baltica OS155]
 gi|151365361|gb|ABS08361.1| threonyl-tRNA synthetase [Shewanella baltica OS185]
 gi|217498491|gb|ACK46684.1| threonyl-tRNA synthetase [Shewanella baltica OS223]
          Length = 642

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 143/443 (32%), Gaps = 40/443 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +   + +   RD      +L L    + + + G+  W   G      +   IR + N
Sbjct: 229 LSTHLTRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELERFIRRKLN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW  SG +D Y + M       ++     P +      IF   +
Sbjct: 287 QYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFT-TSSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +  +   +      
Sbjct: 346 KSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFCTDSQVQEE-VSACIQMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G ++I ++  + P                           D    +      D
Sbjct: 405 YDTYATFGFENIVVKLSTRPEKR-----------------IGDDAMWDRAEEALKQALRD 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +I+    A Y    +     L D L    +     ++       G        AT
Sbjct: 448 NNIEFTILPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPSRLG--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     ++   + G+   W   +    +++         
Sbjct: 497 YVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGRFPTWLAPMQVVVMNIT------DK 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  E++     + G    +D   E+IG +     L   P  ++VG + + + +V ++ 
Sbjct: 551 QADYVEEVVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R       M LE+       + S
Sbjct: 611 RDGIDLGKMRLEDFATKIHQQIS 633


>gi|154249412|ref|YP_001410237.1| threonyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
 gi|154153348|gb|ABS60580.1| threonyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
          Length = 638

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 147/443 (33%), Gaps = 43/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L +L+E   RD      +L L    I+   + G+  +LP G   L  + ++ RE   + 
Sbjct: 232 YLKMLEEARKRDHRRLGPQLELF--FINTDVAAGMPIFLPYGMTVLKELMSLSRELHKKY 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    LW +SG +D Y   M    ++ +      P +      I+++   S
Sbjct: 290 GYKEVGTPLIMHEKLWRQSGHWDHYKNNM-YFTEKEEVTYAVKPMNCPGHILIYKNKPVS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y++LP   ++     R E      G++R R F   DA+ F    +               
Sbjct: 349 YKDLPIRLFEFGRVHRYERGGVLHGLLRVRTFTQDDAHIFCREDQIVDEVT----NVVRF 404

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G+     RA    +  D                   +   +          +++ 
Sbjct: 405 INELYGIFGFSYRATLSTMPEDHM---------------GDEATWEKATEGLRNALEEMK 449

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D L    + +   ++    F    ++      T+K
Sbjct: 450 VPYEVAEGEGAFYGPKIDFH---VRDVLGREWQCATIQMD----FQMPERFD----LTYK 498

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            +DG +     +     G++     ++   + G    W   V    I +       +   
Sbjct: 499 DSDGNERRPVMIHRALYGSIERFFGILIEHYAGAFPTWLAPVQAVVIPV------SEKFS 552

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  + IY  L +    V  DD  E +  +     +   P  +IVG K      + ++ R 
Sbjct: 553 EYAKNIYQTLDENDIRVELDDRNETLSYRIRENQMRKVPYMIIVGEKEKESETISVRTRE 612

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 + + + I    +     
Sbjct: 613 GKDTHGIKINDFIETVLNEIRKR 635


>gi|225864350|ref|YP_002749728.1| threonyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|225785860|gb|ACO26077.1| threonine--tRNA ligase [Bacillus cereus 03BB102]
          Length = 639

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 155/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    S       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEASLENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYADEVADKLAQAGVRVERDMRDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               + + L+  +        N +
Sbjct: 616 EEKSDVIELDMFVESIKVEIKNRK 639


>gi|294501489|ref|YP_003565189.1| threonyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294351426|gb|ADE71755.1| threonyl-tRNA synthetase [Bacillus megaterium QM B1551]
          Length = 645

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 155/438 (35%), Gaps = 36/438 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRLLEEAKERDHRKLGKELNLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEVSLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y  +M    + +++ ++  P +      +++  I SYR
Sbjct: 296 QHVYTPVLGSVELYKTSGHWEHYQDDMFPAMEMDNEDLVLRPMNCPHHMMVYKQGIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K  + ++      ++ 
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEEFIRVVRLVEAVYK 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISL 245
             G ++   R                  D  +T+ +   D M     S      D++   
Sbjct: 416 DFGFENYSFRLS--------------YRDPADTEKYFDDDAMWEKAQSMLKDAMDELDLD 461

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  +L + + +S   ++    F    ++      T+ G 
Sbjct: 462 YYEAEGEAAFYGPKLDV---QVKTALGKEETLSTVQLD----FLLPERFD----LTYIGE 510

Query: 306 DGKDHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           DGK H   +   G+     R VA +IE                       +        +
Sbjct: 511 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSPTV------HLE 564

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G  V  D   E+IG +   A +   P  ++VG K V D  V ++    
Sbjct: 565 YAKEVQEQLQLAGIRVELDSRDEKIGYKIREAQMQKIPYMLVVGDKEVEDKAVNVRKYGE 624

Query: 424 GIREDMSLEEVINYASHR 441
              E +  +  +      
Sbjct: 625 QNSETVGFQAFLQNVKAE 642


>gi|323351205|ref|ZP_08086861.1| threonine--tRNA ligase [Streptococcus sanguinis VMC66]
 gi|322122429|gb|EFX94140.1| threonine--tRNA ligase [Streptococcus sanguinis VMC66]
          Length = 647

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 151/445 (33%), Gaps = 32/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             KY     +   RD      +L L   MI  +  +G+  WLP G      +   I +++
Sbjct: 228 LKKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKE 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRS 120
             +G   +  P L S  L+  SG ++ Y ++M    D  D +  +  P +      +++ 
Sbjct: 286 LASGYQHVYTPPLASVGLYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKH 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SYR LP    +I +  R E       ++    +  +     +TPE  +  + +    
Sbjct: 346 HVHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R            +     D  E          +          D
Sbjct: 406 IIDVYADFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALD 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 453 EMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I   +         +     +    I   ++ 
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEA 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++ 
Sbjct: 558 HIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                   + ++E +       ++ 
Sbjct: 618 YGQKETHTIPVDEFVEQILADIASK 642


>gi|229178727|ref|ZP_04306091.1| Threonyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|228604885|gb|EEK62342.1| Threonyl-tRNA synthetase [Bacillus cereus 172560W]
          Length = 640

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 154/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 KYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TP+  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPKQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             + +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYADEVADKLAQAGVRVERDVRDEKLGYKIREAQMQKVPYILVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E ++L            N +
Sbjct: 616 EEKSEVVTLNVFAASIEEEIKNRK 639


>gi|152984493|ref|YP_001349901.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
 gi|166980141|sp|A6VA16|SYP_PSEA7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150959651|gb|ABR81676.1| prolyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
          Length = 571

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 126/269 (46%), Positives = 177/269 (65%), Gaps = 10/269 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DA + SH+L+LR GMI + + G+Y+WLP+G + L  V  ++REE
Sbjct: 1   MRTSQYLLSTLKETPADAVVISHQLLLRAGMIRRLASGLYTWLPMGLRVLRKVETVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPAVQPAELWQESGRWEQYGPELLRLKDRHEREFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSF L  E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHLNQESLQATYDGMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RLGL   P++A++G IGG  SHEF VLA++GE  +  S    D+    E  +  
Sbjct: 181 YSKIFTRLGLDFRPVQADNGSIGGSGSHEFHVLANSGEDDIVFSDS-SDYAANIEKAEA- 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                   V + +A  AA+ D+      D
Sbjct: 239 --------VPRESARGAASEDMRLVDTPD 259



 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 71/193 (36%), Positives = 112/193 (58%), Gaps = 4/193 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K   V  RGIEVGHIF  GTKYS  M  +     GK   +
Sbjct: 378 PLPEVADLRNVVEGDPSPDGKGTLVIKRGIEVGHIFQLGTKYSEAMKLSVLSEQGKPVNL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE +HD +GI+WP ++APF+I+L+ +K   +  R A +++YA L
Sbjct: 438 IMGCYGIGVSRVVAAAIEQNHDERGILWPSALAPFQIALVPLKYETESVRQATDRLYAEL 497

Query: 373 SKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G +V  DD  +    G +FA  +LLG P +++V  + +++  +E K R     +++ 
Sbjct: 498 TAAGFEVLLDDRDKKTSPGVKFADMELLGIPHRIVVSDRGLNEGVLEYKGRRDSESQNLP 557

Query: 431 LEEVINYASHRFS 443
           + E++++ + + S
Sbjct: 558 IGELMSFITEKLS 570


>gi|125718378|ref|YP_001035511.1| threonyl-tRNA synthetase [Streptococcus sanguinis SK36]
 gi|166225508|sp|A3CP56|SYT_STRSV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|125498295|gb|ABN44961.1| Threonyl-tRNA synthetase, putative [Streptococcus sanguinis SK36]
          Length = 647

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 153/445 (34%), Gaps = 32/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             KY     +   RD      +L L   MI  +  +G+  WLP G      +   I +++
Sbjct: 228 LKKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATVRRELERYIVDKE 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRS 120
             +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      +++ 
Sbjct: 286 LASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKH 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SYR LP    +I +  R E       ++    +  +     +TPE  +  + +    
Sbjct: 346 HVHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R            +     D  E          +          D
Sbjct: 406 IIDVYADFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALD 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 453 EMGVDFFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I   +         +     +    I   ++ 
Sbjct: 502 KYVGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEA 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++  +L   G     D+  E++  +   +     P Q+IVG K V D  V ++ 
Sbjct: 558 HIDYAWQVAKKLRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEVEDGTVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                   ++++E +       ++ 
Sbjct: 618 YGQKETHTVAVDEFVEQILADIASK 642


>gi|308233449|ref|ZP_07664186.1| threonyl-tRNA synthetase [Atopobium vaginae DSM 15829]
 gi|328944509|ref|ZP_08241970.1| threonine--tRNA ligase [Atopobium vaginae DSM 15829]
 gi|327490910|gb|EGF22688.1| threonine--tRNA ligase [Atopobium vaginae DSM 15829]
          Length = 592

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 154/438 (35%), Gaps = 43/438 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      ++ L   M+++   G   WLP G +  + +    +E Q + G  ++  
Sbjct: 190 EAEKRDHRKIGREMDLF--MVNEAGPGFPFWLPNGMRIRNALMNYWQEMQEKFGYEQIQT 247

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + S  LW  SG +D Y + M      +++     P +      ++ +  +SYR+LP  
Sbjct: 248 PVILSRKLWETSGHWDHYKENMYT-TKIDEEDFAIKPMNCPGACLVYMNKPRSYRDLPLK 306

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             +  L  R EL+    G+ R REF   DA+ F    +             +  +++   
Sbjct: 307 LAEAGLDHRHELKGTLHGLFRVREFTQDDAHLFIRPDQICDEVAEVT--HLITAYYKQFG 364

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +   + P     S E    A+ G                      + +    +I E
Sbjct: 365 FPYKVELSTRPENSMGSDEDWKTAEDG-----------------LRNALETMGLEYTINE 407

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D H   L D L    +     ++      F        +  +   DG+  
Sbjct: 408 GDGAFYGPKIDFH---LKDCLGRTWQCGTIQLDFQFPHNF--------NLEYVDKDGQKK 456

Query: 311 YV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +   G G+      ++   ++GK  +W   +    + +       +  R    ++ 
Sbjct: 457 RPIMIHRAGFGSFERFIGMLIEQYEGKFPVWLAPLQVKVLPV------SEKTRAYARELT 510

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L  +   V  DD  E+IG +   A  +   P  +IVG +      + ++ R T   + 
Sbjct: 511 QKLRDLKIRVKLDDRDEKIGYKIREARSIDRVPYMLIVGEQEAQAGNISVRDR-TNTTKQ 569

Query: 429 MSLEEVINYASHRFSNNR 446
            + ++ +     + S+ +
Sbjct: 570 YAFDDFVALLQAQISSRQ 587


>gi|166711588|ref|ZP_02242795.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 634

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 138/438 (31%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 232 YILRMEEADKRDHRRIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIESEVTAFHQQALAV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P                           D    +  +       
Sbjct: 408 YTAFGFDDIQIKIALRPEKR-----------------LGDDATWDKAEAALRSALGVCGV 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L D++    ++    ++       G        A +  
Sbjct: 451 EWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 499

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   V     ++           D
Sbjct: 500 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSWLAPVQVVVANIT------DAQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R  
Sbjct: 554 YVDAVRKTLANQGFRVSADLRNEKIGYKIREHMLQRVPYLLVVGDREKENGAVAVRTRSG 613

Query: 424 GIREDMSLEEVINYASHR 441
                M++   I      
Sbjct: 614 EDLGTMTVSAFIERLQAE 631


>gi|256823089|ref|YP_003147052.1| prolyl-tRNA synthetase [Kangiella koreensis DSM 16069]
 gi|256796628|gb|ACV27284.1| prolyl-tRNA synthetase [Kangiella koreensis DSM 16069]
          Length = 571

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 123/238 (51%), Positives = 163/238 (68%), Gaps = 1/238 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E+P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V AI+REE
Sbjct: 1   MRSSQYLLSTQREDPSDAELISHKLMLRAGMIRKIASGMYTWLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIEM +P++Q ++LW ESGR+D +G E+LR  DR+ +    GPTHEE++T + R 
Sbjct: 61  MNKAGAIEMLMPSVQPSELWEESGRWDQFGPELLRFKDRHGRDFCLGPTHEEIITAVIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP +FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF +  E    +Y  M  +
Sbjct: 121 EINSYKQLPASFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHVDEESLSETYQVMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           Y  IF R+GL   P+ A++G IGG  SHEF VLA++GE  +  S +  D+    E   
Sbjct: 181 YCNIFERIGLDYRPVLADTGAIGGSNSHEFHVLAESGEDAIAFSSEG-DYAANIEKAQ 237



 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 68/196 (34%), Positives = 110/196 (56%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           Q  A  +   D+ N    D  P+ K +    RGIEVGHIF  G KYS  M+      +GK
Sbjct: 375 QRDAQISEVMDIRNVVAGDPSPDGKGILEIKRGIEVGHIFQLGNKYSEAMNCKVLDQNGK 434

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEK 367
              + MG YG+G  R+VAA IE ++D  GIIWP ++APF++++I +  H  +  +   +K
Sbjct: 435 AVTLAMGCYGVGVSRIVAAAIEQNYDNNGIIWPQAIAPFQVAIIPMNMHRSEQVQQIADK 494

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y  L + G DV +DD  E+ G  F+  +L+G P +++V  + + +  +E K+R    ++
Sbjct: 495 LYQDLQQQGIDVIFDDRKERPGVMFSDMELIGVPHRLVVSERGLENGTIEYKNRQNTAKD 554

Query: 428 DMSLEEVINYASHRFS 443
           D+S+E V++Y      
Sbjct: 555 DVSVENVVDYIKGLLQ 570


>gi|319897020|ref|YP_004135215.1| threonyl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|317432524|emb|CBY80883.1| threonyl-tRNA synthetase [Haemophilus influenzae F3031]
          Length = 643

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 144/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 QYDYQEVKGPFMMDRVLWEKTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P     S E                   D            
Sbjct: 405 YDIYSTFGFTNIAVKLSTRPENRIGSDE-----------------MWDRAEGGLAAALAH 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                AT
Sbjct: 448 NGLEYEIQEGEGAFYGPKIEF---ALRDCLGREWQCGTVQLDFALPGRLD--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNNRKTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE      ++  N 
Sbjct: 611 RKGADLGTFTVEEFAEILKNQVRNR 635


>gi|222100818|ref|YP_002535386.1| Threonyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
 gi|254783544|sp|B9KAN7|SYT_THENN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221573208|gb|ACM24020.1| Threonyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
          Length = 640

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 164/443 (37%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      +L L   +   ++ G+  +LP G   L+ +    RE     G
Sbjct: 229 YLKFLEEAQKRDHRKLGPQLELFM-LNTDYAPGMPFFLPRGVIVLNELMNFSRELHRERG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +D Y + M    ++ ++     P +      +++S   SY
Sbjct: 288 YQEIFTPLIMNEQLWRISGHWDHYAENM-YFIEKGEERYAVKPMNCPGHILVYKSRAVSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F++     R E      G+MR R F   DA+ F  TP+  +     +      I
Sbjct: 347 RDLPLRFFEFGRVHRYERSGVLHGLMRVRSFTQDDAHIFC-TPDQIEDEILGVLELINTI 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G                      V   T        +   +    +     D    
Sbjct: 406 YSQFGFTYR------------------VELSTMPEDHMGDEAIWEKATNALKKALDRAGL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   + DSL    + +   ++               + T+ G
Sbjct: 448 PYRVNEGEGAFYGPKIDFH---IKDSLGREWQCATIQLDF--------MMPEKFNVTYIG 496

Query: 305 ADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D ++H  V +     G++     ++     G    W   +AP ++++I I        +
Sbjct: 497 PDNREHTAVMIHRAIYGSLERFFGILIEHFAGAFPTW---IAPVQVAVIPISDKHS---E 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   LS+ G  VF DD  E +G +   A +   P  V++G + +   K+ ++ R  
Sbjct: 551 GAKKVATMLSREGFRVFLDDRRETLGYRIRQAQIQKIPYMVVLGDRELESGKLSVRTRSG 610

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
              +D+ ++  I+       + +
Sbjct: 611 KEIKDVEMDHFIDTLKKEVRDRK 633


>gi|304408774|ref|ZP_07390395.1| threonyl-tRNA synthetase [Shewanella baltica OS183]
 gi|307302777|ref|ZP_07582532.1| threonyl-tRNA synthetase [Shewanella baltica BA175]
 gi|304352595|gb|EFM16992.1| threonyl-tRNA synthetase [Shewanella baltica OS183]
 gi|306913137|gb|EFN43559.1| threonyl-tRNA synthetase [Shewanella baltica BA175]
          Length = 642

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 143/443 (32%), Gaps = 40/443 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +   + +   RD      +L L    + + + G+  W   G      +   IR + N
Sbjct: 229 LSTHLTRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELERFIRRKLN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW  SG +D Y + M       ++     P +      IF   +
Sbjct: 287 QYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFT-TSSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +  +   +      
Sbjct: 346 KSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFCTDSQVQEE-VSACIQMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G ++I ++  + P                           D    +      D
Sbjct: 405 YDTYATFGFENIVVKLSTRPEKR-----------------IGDDAMWDRAEEALKQALRD 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +I+    A Y    +     L D L    +     ++       G        AT
Sbjct: 448 NNIEFTILPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPSRLG--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     ++   + G+   W   +    +++         
Sbjct: 497 YVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGRFPTWLAPMQVVVMNIT------DK 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  E++     + G    +D   E+IG +     L   P  ++VG + + + +V ++ 
Sbjct: 551 QADYVEEVVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R       M LE+       + S
Sbjct: 611 RDGIDLGKMRLEDFATKIHQQIS 633


>gi|329733112|gb|EGG69449.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus 21193]
          Length = 644

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 161/445 (36%), Gaps = 33/445 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++   M+  P +      I+ +  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++    +
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMII 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDD 241
            ++   G +    R                  D  + + +   D   +          D+
Sbjct: 408 DVYKDFGFEDYSFRLS--------------YRDPEDKEKYFDDDDMWNKAENMLKEAADE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  ++ + + +S   ++    F    ++      T
Sbjct: 454 LGLSYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERFD----LT 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G DG+ H   +     G +  +   +    +     +P  +AP ++ +I +     + 
Sbjct: 503 YIGQDGEHHRPVVIHR--GVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNV--DLH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++  
Sbjct: 559 YDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +  +E +  +E I          +
Sbjct: 619 GSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|229017690|ref|ZP_04174581.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
 gi|228743616|gb|EEL93725.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 639

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 154/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + +LW +SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQELWEKSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G +   +   + P                           +    +       + 
Sbjct: 410 VYKTFGFQYE-VELSTRPEDS-----------------MGDDKLWEQAEAALANVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G   +W        + +  I   + V  
Sbjct: 501 DEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPVWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++  +L++ G  V  D   E++G +   A +   P  +++G K +    V ++   
Sbjct: 556 QYANEVAHKLAQAGIRVEEDIRDEKLGYKIREAQMQKVPYVLVIGDKEMESEAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               + + L+  +        N +
Sbjct: 616 EEESKIVELDAFVESMKEEMKNRK 639


>gi|254362299|ref|ZP_04978411.1| threonine--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|153093879|gb|EDN74807.1| threonine--tRNA ligase [Mannheimia haemolytica PHL213]
          Length = 643

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 69/444 (15%), Positives = 144/444 (32%), Gaps = 38/444 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLQRLEEAAKRDHRRIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 EYDYQEVKGPFMMDRVLWEKTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +      + + + Y
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIESEVISCIKMVY 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                  G  +I ++  + P                           D           +
Sbjct: 406 DIYST-FGFTNIAVKLSTRPENR-----------------IGDDAMWDRAEKGLANALRN 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++    F    + +    A 
Sbjct: 448 NGLEYEIQEGEGAFYGPKIEF---ALRDCLGREWQCGTVQLD----FALPGRLAASYVAE 500

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               +G+   V +    +G++     +I   + G    W        +++          
Sbjct: 501 ---DNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNIT------DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV ++ R
Sbjct: 552 ADYVQQVVKQLSDAGIRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                    + +++    ++    
Sbjct: 612 KGADLGTYLVSDLVEILKNQIKAR 635


>gi|149371736|ref|ZP_01891152.1| threonine--tRNA ligase (threonine tRNA synthetase) [unidentified
           eubacterium SCB49]
 gi|149355363|gb|EDM43923.1| threonine--tRNA ligase (threonine tRNA synthetase) [unidentified
           eubacterium SCB49]
          Length = 647

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 75/446 (16%), Positives = 158/446 (35%), Gaps = 36/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L T    +  +G+  WLP G    + +   +++ Q 
Sbjct: 228 LKEYLALLEEAKKRDHRKLGKELELFT-FSQKVGQGLPLWLPKGAALRERLENFLKKAQK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRS 120
           + G   +  P + + +L+V SG +  YG++  +      + +  +  P +     +I+ +
Sbjct: 287 KAGYEMVVTPHIGNKELYVTSGHFAKYGEDSFQVINTPNDGEEFMLKPMNCPHHCEIYNA 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SY++LP    +    +R E      G+ R R F   DA+ F  TP+     + K+  
Sbjct: 347 KPMSYKDLPKRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPDQLDEEFKKVID 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG +    +     +             +   +        +    +     
Sbjct: 406 LVLYVFGSLGFEKFTTQVSIRDM-------------SKPEKYIGDVSTWEKAENAILNAV 452

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D      + E   A Y    D     + D+L  + ++    ++                
Sbjct: 453 KDKGLDYIVEEGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERFE 501

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+KG+D + H    +     G++    A++     G   +W           + I +  
Sbjct: 502 LTYKGSDNELHRPVMIHRAPFGSLERFVAILLEHTGGNFPLW------LMPEQVAILSLS 555

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   +  EK+   L         D+  E IG +   A++   P  +I+G +  +D  + +
Sbjct: 556 EKYEEYAEKVLNLLENHDIRALVDNRNETIGKKIREAEMNKIPYMLILGEQEENDGTISV 615

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           +    G    M++E   N  +   + 
Sbjct: 616 RKHSEGDLGTMTVEAFGNMITEAIAK 641


>gi|325279133|ref|YP_004251675.1| threonyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
 gi|324310942|gb|ADY31495.1| threonyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
          Length = 650

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 165/449 (36%), Gaps = 36/449 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           ++ + + +   RD      ++ L T        G+  WLP G    D +   +R+ Q + 
Sbjct: 231 EWLVLMEEAKQRDHRKIGKEMELFT-FSQAVGAGLPMWLPKGAMLRDRLEGFLRKVQKKY 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G  ++  P + + +L+  SG Y  YGK+  +     +  +  +  P +     +I++   
Sbjct: 290 GYQQVITPHIGNVNLYKTSGHYQKYGKDSFQVITTPQEGEEFMLKPMNCPHHCEIYKFKP 349

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP  F +    +R E      G+ R R F   DA+ F  TP+  K  + K+    
Sbjct: 350 RSYKDLPLRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFC-TPDQLKEEFKKVIDII 408

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             IF  L  K    +                  D   T+ +   D           +  +
Sbjct: 409 FTIFKALDFKDFTAQVSLR--------------DPKNTEKYIGTDENWEKAERAIIEAAE 454

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++      F  +Y+   + 
Sbjct: 455 EKGLKTTVELGEAAFYGPKLDFM---VKDAIGRKWQLGTIQVDYNLPERFDLEYTGADNL 511

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                      V +     G+M    AV+     GK  +W        + +       + 
Sbjct: 512 K-------HRPVMIHRAPFGSMERFVAVLIEHTGGKFPLWLAPDQVVVMPI------SEK 558

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   L+        DD  E+IG +    +L   P  +IVG   ++++ V ++ 
Sbjct: 559 FNDYAQKLSDLLNNSDIRTVLDDRNEKIGRKIRDNELKKIPYLLIVGENEMNNNTVSVRR 618

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  G    MS+E+ I+  +   ++    +
Sbjct: 619 QGQGDMGTMSVEDFISKINEEVNSQLQTI 647


>gi|15924673|ref|NP_372207.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927261|ref|NP_374794.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|156980000|ref|YP_001442259.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|255006467|ref|ZP_05145068.2| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|54039693|sp|P67585|SYT_STAAN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|54042050|sp|P67584|SYT_STAAM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225504|sp|A7X3A6|SYT_STAA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|13701479|dbj|BAB42773.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247455|dbj|BAB57845.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156722135|dbj|BAF78552.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           Mu3]
          Length = 645

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 161/445 (36%), Gaps = 33/445 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++   M+  P +      I+ +  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++    +
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMII 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDD 241
            ++   G +    R                  D  + + +   D   +          D+
Sbjct: 408 DVYKDFGFEDYSFRLS--------------YRDPEDKEKYFDDDDMWNKAENMLKEAADE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  ++ + + +S   ++    F    ++      T
Sbjct: 454 LGLSYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERFD----LT 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G DG+ H   +     G +  +   +    +     +P  +AP ++ +I +     + 
Sbjct: 503 YIGQDGEHHRPVVIHR--GVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNV--DLH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++  
Sbjct: 559 YDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +  +E +  +E I          +
Sbjct: 619 GSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|319942329|ref|ZP_08016644.1| threonyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
 gi|319804202|gb|EFW01102.1| threonyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
          Length = 636

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 134/444 (30%), Gaps = 41/444 (9%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L +   RD      +L L    +   + G+  W   G      +   +R     
Sbjct: 229 KAYLEMLAEAEKRDHRRLGRELDLF--HLQDEAPGMVFWHAKGWALWQVIEQFMRRVYQD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L    LW  SG +  Y   M    +  ++     P +      IF S ++
Sbjct: 287 NGYEEVKAPQLLDRSLWERSGHWAKYRDNMFT-TESENRYYALKPMNCPGHIQIFNSKLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   D + F    +              
Sbjct: 346 SYRDLPLRIGEFGQCHRNESSGSLHGLMRVRGFTQDDGHIFCTEDQILAEC-EAFTALVQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   I  +  + P                           D    +     D +
Sbjct: 405 KVYKTFGFTDIAYKVATRPAMR-----------------IGEDAVWDKAEHALMASLDAL 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                ++    A Y    + H   L D L  + +     ++       G        A +
Sbjct: 448 GIKYEVLVGEGAFYGPKIEYH---LKDCLGRSWQCGTVQVDFQMPGRLG--------AEY 496

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D  +   V +    +G++     ++     G   +W             + +     
Sbjct: 497 VAEDNSRKIPVMLHRAILGSLERWIGMLIEEFAGAFPVW------LAPIQCAVTSITDNQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               + + A+L   G  V  D   E+I  +     L   P  ++VG K      V ++ R
Sbjct: 551 GAYAKDVAAKLHAAGLRVQTDLRSEKINYKIRELSLQKLPYILVVGEKEAQTGTVSVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MSL+  I   S      
Sbjct: 611 GGENLGVMSLDAFIERISTENRER 634


>gi|319776351|ref|YP_004138839.1| threonyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|329123506|ref|ZP_08252070.1| threonine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
 gi|317450942|emb|CBY87169.1| threonyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|327471088|gb|EGF16543.1| threonine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
          Length = 643

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 144/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 QYDYQEVKGPFMMDRVLWEKTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P     S E                   D            
Sbjct: 405 YDIYSTFGFTNIAVKLSTRPENRIGSDE-----------------MWDRAEGGLAAALAH 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                AT
Sbjct: 448 NGLEYEIQEGEGAFYGPKIEF---ALRDCLGREWQCGTVQLDFALPGRLD--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE      ++  N 
Sbjct: 611 RKGADLGTFTVEEFAEILKNQVRNR 635


>gi|238797380|ref|ZP_04640880.1| Threonyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
 gi|238718811|gb|EEQ10627.1| Threonyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
          Length = 642

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A++                        +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEQWTRAES-----------------DLAAALTENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    + S    A++ G
Sbjct: 451 PFDYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----ASYIG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++   + G    W   V    +++           D
Sbjct: 500 ENNDRQVPVMIHRAILGSIERFIGILTEEYAGFFPTWLAPVQVVVMNIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R  
Sbjct: 554 YVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + +  V++       + 
Sbjct: 614 KDLGSLDVNVVVDQLLAEIRSR 635


>gi|92114261|ref|YP_574189.1| prolyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043]
 gi|114152183|sp|Q1QVL8|SYP_CHRSD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91797351|gb|ABE59490.1| prolyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043]
          Length = 573

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 128/237 (54%), Positives = 167/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +  L+E P DA+I SH+LMLR GMI + S G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRASQLLISTLKETPADADIVSHQLMLRAGMIRRLSSGLYTWLPLGLRTLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P++Q A+LW ESGR+D YG  +LR+ DR+++   YGPTHEEV+TD+ R+
Sbjct: 61  MNRAGAQEVLMPSIQPAELWQESGRWDQYGNLLLRIRDRHERDFCYGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFGVMR+REF+MKDAYSFD+   G + SY+ M+ +
Sbjct: 121 EIRSYKQLPSNFYQIQTKFRDETRPRFGVMRAREFIMKDAYSFDIDQAGLQRSYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y+RIF RLGL    + A++G IGG  SHEF VLAD+GE  V       D+    E  
Sbjct: 181 YMRIFTRLGLDFRAVEADNGDIGGSGSHEFQVLADSGEDAVIF-STGSDYAANIEKA 236



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/197 (36%), Positives = 111/197 (56%), Gaps = 3/197 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +        +D+ N    D  P+ K     ARGIEVGH+F  GTKYS  M+AT    +G+
Sbjct: 377 ERDVALPKVADLRNVVEGDPSPDGKGTLSIARGIEVGHVFQLGTKYSTAMNATVLDDNGQ 436

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              + MG YGIG  RVVAA IE +HD  GIIWPD++APF+I+L+ + A   +  R+  + 
Sbjct: 437 AVPLLMGCYGIGVTRVVAAAIEQNHDAGGIIWPDAIAPFEIALVPMNAHKSERVREYADT 496

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y +LS  G DV  DD   + G +FA  +L+G P +V++G + + + ++E K R      
Sbjct: 497 LYQQLSDAGFDVLIDDRDLRPGVKFADQELIGIPHRVVIGDRGLDNDELEYKGRRDSDVT 556

Query: 428 DMSLEEVINYASHRFSN 444
            +  E ++++   R + 
Sbjct: 557 MVPTEGLLSFLRERITK 573


>gi|72381873|ref|YP_291228.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
 gi|123759915|sp|Q46LV3|SYT_PROMT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72001723|gb|AAZ57525.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Prochlorococcus
           marinus str. NATL2A]
          Length = 641

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 151/445 (33%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      K  L      + + G+  W P G      +   IRE   
Sbjct: 228 LKEYLSRIEEAEKRDHRKLGKKYSLF--HSQEEAPGMVFWHPKGWTIYRILEDFIRETIT 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW +SG +D + ++M       ++     P +      IF   +
Sbjct: 286 KYDYQEVKSPQVVDRSLWEKSGHWDKFKEDMFTTT-SENREYAIKPMNCPCHIQIFNQGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F+  DA+ F    +  +          
Sbjct: 345 KSYRDLPIRLSEFGSCHRNEPSGALHGLMRVRNFVQDDAHIFCTDEQIQEE-VQNFIDLV 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G  SI ++  + P+                     S D  D    + +   D 
Sbjct: 404 FEVYKTFGFDSILIKLSTRPVKR-----------------VGSDDIWDKSEKALSEALDS 446

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                S++    A Y    +     L D L    +     ++               +A+
Sbjct: 447 KGLDWSLLPGEGAFYGPKIEF---SLKDCLNRVWQCGTIQVDFSMPQRL--------NAS 495

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    G+      +    +G+      ++    +     +P  ++P +I ++ I   +  
Sbjct: 496 YIDITGRKQTPVMLHRAILGSFERFIGILI---ENYSGNFPTWLSPIQIMIMGITDRN-- 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +AC     +L   G     D   E++G +     +   P  +I+G K   +S++ ++ 
Sbjct: 551 -NEACFTAKDKLVDFGFRAEIDIRNEKVGFKIREHTMQRIPFLIIIGDKEEENSEISVRT 609

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R      +MS+++         S  
Sbjct: 610 REGKDLGNMSIDKFKLIIDESISKK 634


>gi|307256244|ref|ZP_07538030.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306865263|gb|EFM97160.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 643

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 138/444 (31%), Gaps = 38/444 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRRIGKALDLY--HMQEEAPGLVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW  +G + +Y  +++      ++     P +      IF   +
Sbjct: 287 EYDYQEVKGPFMMDRVLWERTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIRMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P                           D            
Sbjct: 405 YDIYSTFGFSNIQVKLSTRPENR-----------------IGDDAMWDRAEDGLAKALTA 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++    F    +      A 
Sbjct: 448 NGLSYEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTIQLD----FALPGRLDASYVAE 500

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               +G+   V +    +G++     +I   + G    W        +++          
Sbjct: 501 ---DNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNIT------DSQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +K+   LS  G     D   E++G +     L   P  ++ G K +   KV ++ R
Sbjct: 552 ADYVQKVTKALSDAGIRAKSDLRNEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVSVRTR 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                   +++E +    ++    
Sbjct: 612 KGADLGTFTIDEFVEILKNQVKAR 635


>gi|253583464|ref|ZP_04860662.1| threonine-tRNA ligase [Fusobacterium varium ATCC 27725]
 gi|251834036|gb|EES62599.1| threonine-tRNA ligase [Fusobacterium varium ATCC 27725]
          Length = 637

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 165/441 (37%), Gaps = 42/441 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E  R D      +L L    + ++  G   +LP G    + +  + R E   
Sbjct: 228 KAYLTLLEEAERRDHRKLGKELDLF--FVSEYGPGFPIFLPKGMVIRNTLIDLWRREHTL 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E++ P + + +LW  SG + +Y + M      +D      P +       ++  + 
Sbjct: 286 AGYQEITTPIMLNKELWEISGHWFNYRENMYTST-IDDTEFAIKPMNCPGGILAYKYQLH 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++ P    ++    R E      G+MR R F   DA+ F +TP+  +     +     
Sbjct: 345 SYKDFPIRCGELGTVHRHEFSGALHGLMRVRSFTQDDAHIF-MTPDQIEEEIIGVVELID 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           + + +L                    E+ +   T   +   S +  +    +     D I
Sbjct: 404 KFYSKLFG-----------------FEYHIELSTKPEKAIGSNEIWEKAEAALAGALDKI 446

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    D    K+ D++    +     ++    F    ++      ++
Sbjct: 447 GKPYKLNPGDGAFYGPKLDF---KIKDAIGRTWQCGTIQLD----FNLPERFD----ISY 495

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H    +     G++     ++    +     +P  +AP ++ ++ I       
Sbjct: 496 IGEDGEKHRPVMIHRVVYGSIERFIGILI---EHFAGAFPLWLAPTQVKILTIN---DEV 549

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKH 420
               ++I+  L + G     DD  E IG +   A+     P+Q+I+G   V + +V I+ 
Sbjct: 550 VPYAKEIFKALQERGIRAEIDDRAESIGYKIREANGKYKIPVQLILGKNEVENREVNIRK 609

Query: 421 RLTGIREDMSLEEVINYASHR 441
             +  +E M L+E ++     
Sbjct: 610 FGSQQQESMKLDEFLDIIVDE 630


>gi|315126513|ref|YP_004068516.1| threonyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
 gi|315015027|gb|ADT68365.1| threonyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
          Length = 636

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 150/448 (33%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L      + + G+  W   G      +   +RE+
Sbjct: 227 KQLKAYLKRLEEAEKRDHRRIGKALDL--WHWQEEAPGMVFWHNDGWSIYRELEEFVREK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW +SG ++ Y + M    +   +     P +      IF  
Sbjct: 285 LREYQYEEVKGPMMMDRSLWEKSGHWEKYSEAMFT-TESEKREYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +      +    
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHVFCTEEQIMDE-VSACIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G + I ++  + P       E    A+                + + + +F
Sbjct: 403 MVYDTYETFGFEKIVVKLSTRPEQRIGEDEMWDKAELALAD----------ALKANDIEF 452

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D        +    A Y    +     L+D L    +     ++       G        
Sbjct: 453 D-------YLPGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFALPGRLG-------- 494

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+   + +      +    +G++     ++   + G    W        +++       
Sbjct: 495 ATYVAENNERRTPVMIHRAILGSIERFIGILTEEYAGLFPTWLAPKQVVIMNIT------ 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  ++I  +L+K+G     D   E+IG +     L   P  ++VG K V   +V +
Sbjct: 549 DKQAPYVQEIVQKLNKLGIRAAADLRNEKIGFKIREHTLKRIPYLLVVGDKEVEQQEVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R        ++++ I   S    N +
Sbjct: 609 RTRTGEDLGKFNVDDFIAKISEEIKNRQ 636


>gi|238783384|ref|ZP_04627407.1| Threonyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
 gi|238715629|gb|EEQ07618.1| Threonyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
          Length = 642

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 142/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRLAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A++                        +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDEQWTRAES-----------------DLAAALTENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    + S    A++ G
Sbjct: 451 PFDYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----ASYIG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G++     ++   + G    W   V    +++           D
Sbjct: 500 ENNDRQVPVMIHRAILGSIERFIGILTEEYAGFFPTWLAPVQVVVMNIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R  
Sbjct: 554 YVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + +  V++       + 
Sbjct: 614 KDLGSLDVNVVVDQLLAEIRSR 635


>gi|332306910|ref|YP_004434761.1| threonyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174239|gb|AEE23493.1| threonyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 638

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 153/448 (34%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L      + + G+  W   G      +   +R +
Sbjct: 227 KQLKAYLNRLEEAEKRDHRKIGKALDLF--HWQEEAPGMVFWHNDGWSIYTELEKFVRSK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW +SG +D Y + M        +     P +      IF  
Sbjct: 285 LREYEYQEVKAPLMMDRSLWEKSGHWDKYAENMFTTT-SEKREYAVKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +           
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHIFC-TEDQILAEVGGCID 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           S   I+   G ++I ++  + P     S E                   D          
Sbjct: 403 SVYEIYKIFGFENISVKLSTRPEKRVGSDE-----------------VWDKAEKELAEAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                    +    A Y    +     L D L    +     ++       G+       
Sbjct: 446 TSKGIDFQYLPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFSMPGRLGS------- 495

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+   DG+    V +    +G++     ++    +     +P  +AP +  ++NI  + 
Sbjct: 496 -TYVAEDGERKVPVMIHRAILGSLERFIGILI---EEYSGFFPLWLAPTQAVVMNITDN- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  +K+  +L ++G     D   E+IG +     L   P  ++VG K +   ++ +
Sbjct: 551 --QSEYAQKVVKKLKEIGIRAKSDLRNEKIGFKIREHTLRRVPYLLVVGDKEIEAGEIAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R       MS++  I  A  +  + +
Sbjct: 609 RSRKGDDLGKMSVDAFIELACEQIKSKQ 636


>gi|323143349|ref|ZP_08078037.1| threonine--tRNA ligase [Succinatimonas hippei YIT 12066]
 gi|322416867|gb|EFY07513.1| threonine--tRNA ligase [Succinatimonas hippei YIT 12066]
          Length = 644

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 148/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y     +   RD  +   KL L      Q + G+  W   G      +   +RE  ++  
Sbjct: 232 YLKKREEAAKRDHRVLGKKLDLF--HFQQEAPGMVFWHNDGWTIYRVIENFMREMLHKYH 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            IE+  P +    LW  SG +D Y + M       ++     P +      IF S  +SY
Sbjct: 290 YIEVKTPQIMDRVLWERSGHWDKYAENMFT-TSSENRDYAIKPMNCPGAIQIFNSRTRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G++R R F   DA+ F    +      + + + Y   
Sbjct: 349 RDLPIRMAEFGNCHRNEPSGSLHGLLRVRAFEQDDAHIFCTEDQIMTEVSDCIRMVYDTY 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +  G   + ++  + P     S E    A+    +     +      P E         
Sbjct: 409 SN-FGFTKVDVKLSTRPEKRIGSDEIWDKAEADLVEALKLNNLEYELQPGE--------- 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L DSL    +     ++    F    +    + A + G
Sbjct: 459 --------GAFYGPKIEF---TLHDSLDRAWQCGTVQLD----FSLPAR----LDAHYIG 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D ++H    +    +G++     V+     G    W   +    +++           D
Sbjct: 500 EDNQEHTPVMIHRAMLGSIERFLGVLTEEFAGSFPTWLAPIQAVVMNIT------DGQVD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L + G  V  D   +++G +     L+  P  ++ G +      V ++ R  
Sbjct: 554 YVKQVAQKLDEAGIRVKSDLRNDKVGFKIREHTLMHVPYMLVCGDREAESGMVAVRTRKG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M L+++I        + 
Sbjct: 614 QDLGAMKLDDLIKMIKSDIISR 635


>gi|294667581|ref|ZP_06732796.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602701|gb|EFF46137.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 634

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 72/438 (16%), Positives = 138/438 (31%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 232 YILRMEEADKRDHRRIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIESEVTAFHQQALAV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P                           D    +  +       
Sbjct: 408 YTAFGFDDIQIKIALRPEKR-----------------LGDDATWDKAESALRSALGVCGV 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L D++    ++    ++       G        A +  
Sbjct: 451 EWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 499

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   V     ++           +
Sbjct: 500 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSWLAPVQVVVANIT------DAQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     +   P  ++VG +   +  V ++ R  
Sbjct: 554 YVDSVRKTLANQGFRVSADLRNEKIGYKIREHTMQRVPYLLVVGDREKENGAVAVRTRSG 613

Query: 424 GIREDMSLEEVINYASHR 441
                M++   I      
Sbjct: 614 EDLGTMTVSAFIERLQAE 631


>gi|213963363|ref|ZP_03391619.1| threonyl-tRNA synthetase [Capnocytophaga sputigena Capno]
 gi|213954031|gb|EEB65357.1| threonyl-tRNA synthetase [Capnocytophaga sputigena Capno]
          Length = 647

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 84/438 (19%), Positives = 156/438 (35%), Gaps = 38/438 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T   ++  +G+  WLP G    + + A +R+ Q + G  ++  P
Sbjct: 237 AKKRDHRKLGKELELFT-FSNKVGQGLPLWLPKGAALRERLEAFLRKAQKQAGYEQVVTP 295

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG +D YGK+  +        +  +  P +     +I+ SH  SY++LP 
Sbjct: 296 HIGHKNLYVTSGHWDKYGKDSFQPIATPNEGEEYLLKPMNCPHHCEIYNSHPWSYKDLPK 355

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +    +R E      G+ R R F   DA+ F  TPE     +  +    L +F  LG
Sbjct: 356 RFAEFGTVYRYEQSGELHGLTRVRCFTQDDAHIFC-TPEQLDDEFKHVIDLVLYVFGSLG 414

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +   +                  D      +   D       +   +      LN ++
Sbjct: 415 FDNFTAQVSLR--------------DPENLSKYIGSDENWAKAENAIINAAKEKGLNYVI 460

Query: 250 E-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           E    A Y    D     + D+L  + ++    ++                  +KGAD +
Sbjct: 461 ETGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERFDLWYKGADNE 509

Query: 309 DHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            H    +     G+M    A++     G   +W         +   I +  +   +  +K
Sbjct: 510 MHRPVMIHRAPFGSMERFVAILLEHTAGNFPLW------LNPNQAIILSLSEKYENYAQK 563

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + + L         D+  E +G +   A+    P  +IVG     +  V ++ R      
Sbjct: 564 VLSLLENSDIRTLIDNRAETMGKKIREAETQKIPYMLIVGENEEKEGTVSVRKRGGEDLG 623

Query: 428 DMSLEEVINYASHRFSNN 445
            MS+E      +   + +
Sbjct: 624 SMSVEAFAKLINDEVAAS 641


>gi|300814791|ref|ZP_07095034.1| threonine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511099|gb|EFK38356.1| threonine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 636

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 74/446 (16%), Positives = 150/446 (33%), Gaps = 41/446 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y     +   RD      +L L +  +H+   G   + P G    +N+ +  +   
Sbjct: 226 KLDEYIEKREEAEKRDHRKLGRELDLFS--MHEEGPGFPFFHPNGMIIRNNLLSWWKNVL 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + + DLW  SG +D Y + M    + +++     P +    T I+ + 
Sbjct: 284 QERGYGEILTPVILNEDLWHRSGHWDHYKENM-YFTEIDEEGYAVKPMNCPGSTLIYSTT 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR+LP  + +  L  R EL     G+ R R F   DA+ + L  +     +    + 
Sbjct: 343 PHSYRDLPLRYAEFGLVHRHELSGALHGLFRVRSFTQDDAHIYCLPNQIKSEVFE--IID 400

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              + +        +   + P       E                   +    +     +
Sbjct: 401 LANLLYDTFGFKYSVELSTRPDDYMGDLE-----------------SWNEAEKALKEALE 443

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +     +I E   A Y    D H E   D++    +     ++    F            
Sbjct: 444 EKGMPYTINEGDGAFYGPKIDYHLE---DAIGRTWQCGTIQLD----FQLPQ----NFEL 492

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   DG       +     G++     ++     GK  +W           + I    +
Sbjct: 493 TYVAEDGSKKRPVMLHRALFGSVERFMGILIEHFAGKFPLW------LSPVQVEIIPVSE 546

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +    +++ +L K G  V  D+  E++G +   A L      +++G K  +  K+ ++
Sbjct: 547 KFKPYAGEVFDQLKKAGIRVKIDERAEKVGYKIREAQLKKVNYMLVIGEKETASHKLSVR 606

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R     +D+ + + I          
Sbjct: 607 KRSGEEVKDVEVSKFIEDLKEEIKTK 632


>gi|121533721|ref|ZP_01665548.1| prolyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
 gi|121307712|gb|EAX48627.1| prolyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
          Length = 567

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 117/246 (47%), Positives = 161/246 (65%), Gaps = 1/246 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  + P L+E P +AE+ SH+LMLR GMI + + GIY++LPL  + L  +  IIREE
Sbjct: 1   MRASNLYAPTLRETPAEAEVISHQLMLRAGMIRKAAGGIYTYLPLAWRVLKKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A++W ++GR+D YG EM RL DR+ +    GPTHEE++T + R 
Sbjct: 61  MDAKGGQELLMPIVQPAEIWKKTGRWDVYGDEMFRLKDRHQRDFCLGPTHEEMITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ K+RDE+RPRFG+MR REF+MKD YSFD   EG   SYNKM+ +
Sbjct: 121 EVRSYRQLPLLLYQIQNKYRDEIRPRFGLMRGREFIMKDLYSFDRDEEGLNESYNKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y R+F R GL   P+ A+SG IGG  SHEF+VLA++GE  +       D+    E  +  
Sbjct: 181 YTRVFTRCGLTFRPVEADSGAIGGSGSHEFMVLAESGEAAIVYCTTC-DYAANVEKAELK 239

Query: 241 DIISLN 246
            I ++ 
Sbjct: 240 PIHAME 245



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 67/187 (35%), Positives = 102/187 (54%), Gaps = 2/187 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+   +  D  P       +ARGIEVG +F   TKYS  + AT+   +G++  + MG 
Sbjct: 379 VADIRLIQENDPCPRCGAPVKTARGIEVGQVFKLYTKYSNALGATYLDENGQERPIVMGC 438

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +AA IE +HD  GIIWP  +APF + +I + A ++      E++Y  L+K G
Sbjct: 439 YGIGVTRTMAAAIEQNHDENGIIWPVPIAPFHVVVIPVNAKEEAQMSLAEEVYTELNKAG 498

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +   DD  E+ G +F  ADL+G+PL+V +G K +S+ +VE+K R TG          + 
Sbjct: 499 VEAILDDRNERPGVKFKDADLIGYPLRVTIGPKALSEGRVEVKVRRTGEIIYFDKANYVR 558

Query: 437 YASHRFS 443
                 +
Sbjct: 559 EVQALLA 565


>gi|192359534|ref|YP_001982928.1| prolyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
 gi|190685699|gb|ACE83377.1| prolyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
          Length = 611

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 129/282 (45%), Positives = 181/282 (64%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ +  L+E P DAE+ SH+LMLR GMI + + G+Y+WLPLG + L  V  I+REE
Sbjct: 37  MRSSRFLIATLKETPADAEVISHQLMLRAGMIRKMASGLYNWLPLGLRVLRKVETIVREE 96

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA+E+ +P +Q A+LW ESGR+  YG E+LR+ DR+D+    GPTHEEV+TD+ R+
Sbjct: 97  MNKSGAMEVLMPVVQPAELWEESGRWQQYGPELLRITDRHDRPFCLGPTHEEVITDLIRN 156

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF LT E  + +Y+ M  +
Sbjct: 157 ELKSYKQLPANFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHLTQESLQQTYDVMHTT 216

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL   P+ A++G IGG  SHEF VLAD+GE  +    +  D+    E  +  
Sbjct: 217 YCNIFSRLGLGYRPVLADTGSIGGAYSHEFHVLADSGEDYIVF-SNGSDYAANIEKAEAL 275

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              +     +      A       E++   L  + + + + +
Sbjct: 276 PPAAPRPAPQHVLQEVATPGQHAIEEVCAFLKVSAQQTVKTL 317



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 108/220 (49%), Gaps = 4/220 (1%)

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
              DF   +    F          EQ  AP  A              +      RGIEVG
Sbjct: 393 HLADFVCGANKDGFHLTGVNWERDEQ--APLVADIRNVVTGDPSPCGKGTLEIKRGIEVG 450

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           HIF  GTKYS  M A     +GK+  + MG YGIG  RVVAA IE + D  GIIWPD++A
Sbjct: 451 HIFQLGTKYSDAMKARVLDENGKEQTMIMGCYGIGVTRVVAAAIEQNFDDNGIIWPDAIA 510

Query: 346 PFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFW-DDMGEQIGSQFAVADLLGFPLQ 403
           PF I+++ I     +     CE++YA+LS  G DV   D+   ++G   A  DL+G P +
Sbjct: 511 PFHIAIVPINMAKSEAVATKCEELYAQLSAAGLDVLLMDEDKARLGVMLADTDLMGIPHR 570

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++VG + +    +E K R    ++++++ +++ +   +  
Sbjct: 571 IVVGDRGLEAGSIEYKGRRDAEKQEIAVGDIVEFLKAQVK 610


>gi|317487453|ref|ZP_07946240.1| threonyl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
 gi|316921312|gb|EFV42611.1| threonyl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
          Length = 646

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 149/440 (33%), Gaps = 40/440 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L        + G+  WLP G      +   +R E  
Sbjct: 229 LKEYLNRIEEAKRRDHRKLGKELDLFAFH-EDVAAGMVFWLPKGMLLRTILEDFLRREHI 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +   +LW +SG Y +Y + M    +         P +      I+ +H+
Sbjct: 288 KRGYQLVQGPQVLRRELWEQSGHYANYRENM-YFTEIEGDMYGIKPMNCVSHMLIYNAHL 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP  ++++ +  R E      G++R R+F   DA+      +             
Sbjct: 347 RSYRELPQRYFELGVVHRHEKSGVLHGLLRVRQFTQDDAHIICAPEQLEDEII------- 399

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                        + A    +      ++ V+  T   +   S +  +    +     + 
Sbjct: 400 ------------GVIALVRDLMALFGFQYRVVISTKPAKAIGSDEAWELATNALIKAVER 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +I     A Y    DV   K+ D++    ++S    +    F    ++       
Sbjct: 448 ANLSYTINAGDGAFYGPKIDV---KVTDAIGREWQLSTIQCD----FTLPERF----ELE 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H    +    +G++     V+   + G    W   V    +++         
Sbjct: 497 YVGQDGERHRPVMVHRAILGSLERFIGVLTEHYAGAFPTWLAPVQAKILTVT------DA 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                E+    L K G     D   E++G +   A L   P  ++VG K V    V ++ 
Sbjct: 551 QNAFAEEACEALRKQGIRAEVDTRNEKLGFKVREAQLAKIPYILVVGDKEVEARSVNVRL 610

Query: 421 RLTGIREDMSLEEVINYASH 440
           R        SL+EV      
Sbjct: 611 RTGENLGVKSLDEVAALVQE 630


>gi|289668713|ref|ZP_06489788.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 634

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 72/438 (16%), Positives = 139/438 (31%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 232 YILRMEEADKRDHRRIGRAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIESEVTAFHQQALAV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P                           D    +  +       
Sbjct: 408 YTAFGFDDIQIKIALRPEKR-----------------LGDDATWDKAEAALRSALGVCGV 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L D++    ++    ++       G        A +  
Sbjct: 451 EWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 499

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   V    +++           +
Sbjct: 500 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSWLAPVQVVVVNIT------DAQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R  
Sbjct: 554 YVDSVRKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSG 613

Query: 424 GIREDMSLEEVINYASHR 441
                M++   +      
Sbjct: 614 EDLGTMTVSAFVERLQAE 631


>gi|209966088|ref|YP_002299003.1| threonyl-tRNA synthetase ThrS [Rhodospirillum centenum SW]
 gi|238065118|sp|B6IV67|SYT_RHOCS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|209959554|gb|ACJ00191.1| threonyl-tRNA synthetase ThrS [Rhodospirillum centenum SW]
          Length = 651

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 155/442 (35%), Gaps = 44/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              I +   RD      ++ L    + + + G   W P G      +   IR + +  G 
Sbjct: 233 LHQIEEAEKRDHRKLGREMDLF--HVQEEAVGSVFWHPKGWALYRTLENYIRTKLDAAGY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRL-----ADRNDKAMIYGPTHEEVMTDIFRSH 121
           +E+  P L  + L+  SG +D YG  M ++      D  +K +   P +      IFR  
Sbjct: 291 VEVRTPQLYDSSLFKASGHWDMYGDNMFKIRESVAEDGTEKFLGVKPMNCPAHVQIFRQG 350

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R+E      G++R R F   DA+ F    +  + +  + F  
Sbjct: 351 LKSYRDLPLRMAEFGNCHRNEPSGALHGILRVRNFTQDDAHIFCTEDQVGQEA-KEYFAL 409

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L ++  LG   I ++    P     + E                   D    S      
Sbjct: 410 QLGVYKDLGFDKIAVKLALRPDVRLGTDE-----------------TWDKAEESLRVALR 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   +    A Y    + H   L D++  + +     ++    F    +    + A
Sbjct: 453 ANDLEFEELPGEGAFYGPKVEFH---LTDAIGRSWQCGTLQLD----FQLPER----LDA 501

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++ G DG  H    +    +G++     ++   + GK  +W   V     +++       
Sbjct: 502 SYIGQDGARHRPVMLHRAILGSLERFIGMMIEHYAGKFPLWLAPVQVVVATIV------S 555

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 + +   L + G  V  D   E+I  +     L   P+ ++VG++      V ++
Sbjct: 556 EADAYAQTVAETLRRAGLRVEADVRNEKINLKVREHSLAKVPVMLVVGAREAEQGTVAVR 615

Query: 420 HRLTGIREDMSLEEVINYASHR 441
                 +E ++L + +      
Sbjct: 616 RLGGKDQEVLALGDAVARLKDE 637


>gi|288553677|ref|YP_003425612.1| threonyl-tRNA synthetase [Bacillus pseudofirmus OF4]
 gi|288544837|gb|ADC48720.1| threonyl-tRNA synthetase [Bacillus pseudofirmus OF4]
          Length = 643

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 162/433 (37%), Gaps = 31/433 (7%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L +   +  +  +G+  WLP G      +   I +++ R G   +  P
Sbjct: 241 AKERDHRKLGKELGIFA-LSQKVGQGLPLWLPKGATVRRVIERYIVDKEERLGYQHVYTP 299

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L S++L+  SG +D Y  +M  + +R+++  +  P +      +++  ++SYR LP   
Sbjct: 300 ILGSSELYKTSGHWDHYKDDMFPVMERDNEEFVLRPMNCPHHMMVYKQDMRSYRQLPLRI 359

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
            ++ +  R E+      ++    +  +       P+  K  + ++      ++   GL  
Sbjct: 360 AELGMMHRYEMSGAVSGLQRVRGMTLNDAHIFCRPDQIKEEFLRVVYLIQEVYKDFGLDD 419

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISLNSIVEQ 251
              R                  D  + + +   D M     S      D++       E 
Sbjct: 420 YKFRLS--------------YRDPEDKEKYFDDDAMWEKAQSMLKEAMDELDVDYYEAEG 465

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    DV   ++  +L +++ +S   ++    F    ++      T+ G DG+ H 
Sbjct: 466 EAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERFD----LTYVGEDGQQHR 514

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +     G +  +   +    +     +P  +AP ++ +I +     V  D  +K+   
Sbjct: 515 PVVVHR--GVVSTMERFVAFLLEEYKGAFPTWLAPVQVQVIPVSP--DVHLDYAKKVQDA 570

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G  V  D+  E+IG +   A +   P  +++G K +    V I+       E   L
Sbjct: 571 LQQAGARVEIDERNEKIGYKIREAQMQKIPYMLVLGDKEMESGAVNIRKYGEQASESKEL 630

Query: 432 EEVINYASHRFSN 444
           +  I+  +     
Sbjct: 631 QAFISDLAEELKK 643


>gi|282916943|ref|ZP_06324701.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283770747|ref|ZP_06343639.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|282319430|gb|EFB49782.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283460894|gb|EFC07984.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
          Length = 645

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 161/445 (36%), Gaps = 33/445 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++   M+  P +      I+ +  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++    +
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMII 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDD 241
            ++   G +    R                  D  + + +   D   +          D+
Sbjct: 408 DVYKDFGFEDYSFRLS--------------YRDPEDKEKYFDDDDMWNKAENMLKEAADE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  ++ + + +S   ++    F    ++      T
Sbjct: 454 LGLSYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERFD----LT 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G DG+ H   +     G +  +   +    +     +P  +AP ++ +I +     + 
Sbjct: 503 YIGQDGEHHRPVVIHR--GVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNV--DLH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++  
Sbjct: 559 YDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +  +E +  +E I          +
Sbjct: 619 GSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|257467995|ref|ZP_05632091.1| threonyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317062281|ref|ZP_07926766.1| threonine-tRNA ligase [Fusobacterium ulcerans ATCC 49185]
 gi|313687957|gb|EFS24792.1| threonine-tRNA ligase [Fusobacterium ulcerans ATCC 49185]
          Length = 637

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 165/441 (37%), Gaps = 42/441 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E  R D      +L L    + ++  G   +LP G    + +  + R E   
Sbjct: 228 KAYLTLLEEAERRDHRKLGKELDLF--FVSEYGPGFPIFLPKGMVIRNTLIDLWRREHTL 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E++ P + + +LW  SG + +Y + M      ++      P +       ++  + 
Sbjct: 286 AGYQEITTPIMLNKELWEISGHWFNYRENMYTST-IDETEFAIKPMNCPGGILAYKYQLH 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++ P    ++    R E      G+MR R F   DA+ F +TP+  +     +     
Sbjct: 345 SYKDFPIRCGELGTVHRHEFSGALHGLMRVRSFTQDDAHIF-MTPDQIEEEIIGVVELID 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           + + +L                    E+ +   T   +   S +  +    +     D I
Sbjct: 404 KFYSKLFG-----------------FEYHIELSTKPEKAIGSNEIWEKAEAALAGALDKI 446

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    D    K+ D++    +     ++    F    ++      ++
Sbjct: 447 GKPYKLNPGDGAFYGPKLDF---KIKDAIGRTWQCGTIQLD----FNLPERFD----ISY 495

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H    +     G++     ++    +     +P  +AP ++ ++ I       
Sbjct: 496 IGEDGEKHRPVMIHRVVYGSIERFIGILI---EHFAGAFPLWLAPTQVKILTIN---DEV 549

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKH 420
               ++I+  L + G     DD  E IG +   A+     P+Q+I+G   V + +V I+ 
Sbjct: 550 VPYAKEIFKALQERGIRAEIDDRAESIGYKIREANGKYKVPVQLILGKNEVENREVNIRK 609

Query: 421 RLTGIREDMSLEEVINYASHR 441
             +  +E M L+E ++     
Sbjct: 610 FGSQQQESMKLDEFLDIIVDE 630


>gi|126640661|ref|YP_001083645.1| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
          Length = 549

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 142/441 (32%), Gaps = 38/441 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       L L    + + + G+  W   G      +   +R+ Q   G
Sbjct: 140 YIKRIEEAEKRDHRKIGKALDLF--HMQEEAPGMVFWHANGWTIYQVLEQYMRKVQQDNG 197

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG   +Y + M        +     P +      +F   +KSY
Sbjct: 198 YQEIKTPQIVDFTLWEKSGHAANYAENMFT-THSESRNYAVKPMNCPCHVQVFNQGLKSY 256

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  K          L +
Sbjct: 257 RDLPIRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTKEQIGKE-VADFIKLTLDV 315

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + M+  + P                           D    S     D    
Sbjct: 316 YKDFGFEEVQMKLSTRPEKR-----------------VGDDALWDLAEKSLADALDAAGL 358

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +      +    F    +           
Sbjct: 359 EWELQPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQCD----FNLPVRLDASY---VTE 408

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +D  V +    +G+      ++    +      P  ++P +  ++NI        +A
Sbjct: 409 ENERDQPVMLHRAILGSFERFIGILI---EHYAGFMPPWLSPVQACVMNITDS---QAEA 462

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E++ A+L + G     D   E+IG +     L   P  +++G + V +  V ++ R   
Sbjct: 463 SEQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGK 522

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS++  I+      +  
Sbjct: 523 NLGTMSVDAFIDLVKSAVAER 543


>gi|283470950|emb|CAQ50161.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 645

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 156/445 (35%), Gaps = 33/445 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++   M+  P +      I+ +  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++    +
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMII 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDD 241
            ++   G +    R                  D  + + +   D   +          D+
Sbjct: 408 DVYKDFGFEDYSFRLS--------------YRDPEDKEKYFDDDDMWNKAENMLKEAADE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  ++ + + +S   ++    F    ++      T
Sbjct: 454 LGLSYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERFD----LT 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G DG+ H   +   G+ +         +           +    +I  +NI  H    
Sbjct: 503 YIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNIDLH---- 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++  
Sbjct: 559 YDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +  +E +  +E I          +
Sbjct: 619 GSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|307249432|ref|ZP_07531421.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858506|gb|EFM90573.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 643

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 138/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRRIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW  +G + +Y  +++      ++     P +      IF   +
Sbjct: 287 EYDYQEVKGPFMMDRVLWERTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIRMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P                           D            
Sbjct: 405 YDIYSTFGFSNIQVKLSTRPENR-----------------IGDDAMWDRAEDGLAKALTA 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                A+
Sbjct: 448 NGLSYEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTIQLDFALPGRLD--------AS 496

Query: 302 FKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    +G+   V +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   LS  G     D   E++G +     L   P  ++ G K +   KV ++ 
Sbjct: 551 QADYVQKVTKALSDAGIRAKSDLRNEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVSVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        +++E +    ++    
Sbjct: 611 RKGADLGTFTIDEFVEILKNQVKAR 635


>gi|109898814|ref|YP_662069.1| threonyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
 gi|109701095|gb|ABG41015.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Pseudoalteromonas atlantica T6c]
          Length = 638

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 152/448 (33%), Gaps = 41/448 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L      + + G+  W   G      +   +R +
Sbjct: 227 KQLKAYLNRLEEAEKRDHRKIGKALDLF--HWQEEAPGMVFWHNDGWSIYTELEKFVRSK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW +SG +D Y + M        +     P +      IF  
Sbjct: 285 LREYEYDEVKAPLMMDRSLWEKSGHWDKYAENMFTTT-SEKREYAVKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +           
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHIFCTDDQILAE-VGGCID 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           S   I+   G ++I ++  + P     S E                   D          
Sbjct: 403 SVYEIYKIFGFENISVKLSTRPEKRVGSDE-----------------VWDKAEKELAEAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                    +    A Y    +     L D L    +     ++       G+       
Sbjct: 446 TSKGIDFQYLPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFSMPGRLGS------- 495

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+   DG+    V +    +G++     ++    +     +P  +AP +  ++NI  + 
Sbjct: 496 -TYVAEDGERKVPVMIHRAILGSLERFIGILI---EEYSGFFPLWLAPTQAVVMNITDN- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  +K+  +L ++G     D   E+IG +     L   P  ++VG K +   ++ +
Sbjct: 551 --QSEYAQKVVKKLKEIGIRAKSDLRNEKIGFKIREHTLRRVPYLLVVGDKEIEAGEIAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R       MS++  I  A  +  + +
Sbjct: 609 RSRKGDDLGKMSVDAFIELACEQIKSKQ 636


>gi|148264838|ref|YP_001231544.1| prolyl-tRNA synthetase [Geobacter uraniireducens Rf4]
 gi|146398338|gb|ABQ26971.1| prolyl-tRNA synthetase [Geobacter uraniireducens Rf4]
          Length = 585

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 128/267 (47%), Positives = 177/267 (66%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P ++E P DAE+ SH+LMLR GMI + + G+Y++LPLG +++  V  I+REE
Sbjct: 15  MRYSQYFIPTVKETPSDAEVISHQLMLRAGMIRKLAAGVYNYLPLGLRSIRKVENIVREE 74

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +PT+Q A+LW ESGR++ YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 75  MNRAGAIELLMPTVQPAELWQESGRWEQYGKELLRFKDRKDTEFCMGPTHEEVITDLVRR 134

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+  + +  SY+KM+ +
Sbjct: 135 EVKSYRQLPINLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDVNEKAADISYDKMYQA 194

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL+   + A++G IGG  SHEF+VLA++GE  +       D+    E  +  
Sbjct: 195 YRRIFERCGLRFRAVEADTGSIGGSYSHEFMVLAESGEDAIVSCTAC-DYAANVEKAEAR 253

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +    +     A       E++
Sbjct: 254 QSGAADHAEPRTLEKVATPDKKSIEEV 280



 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 80/187 (42%), Positives = 113/187 (60%), Gaps = 3/187 (1%)

Query: 256 YAATSDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            ++ +D+ N  L D  P          RGIEVGH+F  GTKYS  M AT+  ADGK+  +
Sbjct: 390 VSSFADIRNVVLGDPCPRCDSGTLEMWRGIEVGHVFKLGTKYSKAMKATYLDADGKEQII 449

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R VAA IE +HD  GII+P  +APF   +  +   ++  RD+ E IYA+L
Sbjct: 450 FMGCYGIGIGRTVAACIEQNHDDNGIIFPLPIAPFHCIISALNMKEEPVRDSSEAIYAQL 509

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +  G +V  DD  E+ G +F  ADL+G PL+++VGSK ++D KVE+K+R TG  E +S+ 
Sbjct: 510 AAAGVEVLLDDRDERPGFKFKDADLIGIPLRIVVGSKNLADGKVELKNRKTGDVELLSIA 569

Query: 433 EVINYAS 439
           + +    
Sbjct: 570 DAVEKVK 576


>gi|21283355|ref|NP_646443.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483925|ref|YP_041149.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486509|ref|YP_043730.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650554|ref|YP_186567.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87161367|ref|YP_494324.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|148268163|ref|YP_001247106.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394230|ref|YP_001316905.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|151221788|ref|YP_001332610.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509896|ref|YP_001575555.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142567|ref|ZP_03567060.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253317174|ref|ZP_04840387.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253732334|ref|ZP_04866499.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734533|ref|ZP_04868698.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257425798|ref|ZP_05602222.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428464|ref|ZP_05604862.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431098|ref|ZP_05607475.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433781|ref|ZP_05610139.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436697|ref|ZP_05612741.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|257794068|ref|ZP_05643047.1| threonyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|258415772|ref|ZP_05682043.1| threonyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|258421991|ref|ZP_05684911.1| threonyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|258424099|ref|ZP_05686981.1| threonyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|258438251|ref|ZP_05689535.1| threonyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|258443709|ref|ZP_05692048.1| threonyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|258445920|ref|ZP_05694096.1| threonyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|258448399|ref|ZP_05696516.1| threonyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|258451803|ref|ZP_05699825.1| threonyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|258454120|ref|ZP_05702091.1| threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase [Staphylococcus
           aureus A5937]
 gi|269203301|ref|YP_003282570.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282893178|ref|ZP_06301412.1| threonyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|282904254|ref|ZP_06312142.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282908994|ref|ZP_06316812.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911310|ref|ZP_06319112.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914479|ref|ZP_06322265.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282919448|ref|ZP_06327183.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282920223|ref|ZP_06327948.1| threonyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|282924825|ref|ZP_06332491.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282927813|ref|ZP_06335424.1| threonyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|283958434|ref|ZP_06375885.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024731|ref|ZP_06379129.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132]
 gi|293503557|ref|ZP_06667404.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510572|ref|ZP_06669277.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|293537114|ref|ZP_06671794.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|294848704|ref|ZP_06789450.1| threonyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|295405993|ref|ZP_06815801.1| threonyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|295428254|ref|ZP_06820883.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296274890|ref|ZP_06857397.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1]
 gi|297207604|ref|ZP_06924039.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245081|ref|ZP_06928958.1| threonyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|297590783|ref|ZP_06949421.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|300911686|ref|ZP_07129130.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380726|ref|ZP_07363395.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|38258392|sp|Q8NW68|SYT_STAAW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56749381|sp|Q6G8P3|SYT_STAAS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56749410|sp|Q6GG23|SYT_STAAR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71153575|sp|Q5HF90|SYT_STAAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123735974|sp|Q2FG54|SYT_STAA3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|172048941|sp|A6QHL6|SYT_STAAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083625|sp|A6U2F0|SYT_STAA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083626|sp|A5ITK7|SYT_STAA9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083627|sp|A8Z2J8|SYT_STAAT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|38492559|pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With An Analogue Of Threonyl
           Adenylate
 gi|38492560|pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With An Analogue Of Threonyl
           Adenylate
 gi|38492561|pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With Atp
 gi|38492562|pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With Atp
 gi|21204795|dbj|BAB95491.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49242054|emb|CAG40753.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244952|emb|CAG43413.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284740|gb|AAW36834.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87127341|gb|ABD21855.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|147741232|gb|ABQ49530.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946682|gb|ABR52618.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|150374588|dbj|BAF67848.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368705|gb|ABX29676.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723934|gb|EES92663.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727474|gb|EES96203.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271492|gb|EEV03638.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275305|gb|EEV06792.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278046|gb|EEV08694.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281874|gb|EEV12011.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284048|gb|EEV14171.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|257788040|gb|EEV26380.1| threonyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|257839365|gb|EEV63838.1| threonyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|257842035|gb|EEV66464.1| threonyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|257845720|gb|EEV69752.1| threonyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|257848295|gb|EEV72286.1| threonyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|257851115|gb|EEV75058.1| threonyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|257855162|gb|EEV78101.1| threonyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|257858367|gb|EEV81252.1| threonyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|257860515|gb|EEV83341.1| threonyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|257863572|gb|EEV86329.1| threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase [Staphylococcus
           aureus A5937]
 gi|262075591|gb|ACY11564.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|269941163|emb|CBI49550.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TW20]
 gi|282313191|gb|EFB43587.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282317258|gb|EFB47632.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282321660|gb|EFB51985.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282325005|gb|EFB55315.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327258|gb|EFB57553.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282590323|gb|EFB95402.1| threonyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|282594571|gb|EFB99556.1| threonyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|282595872|gb|EFC00836.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282764496|gb|EFC04622.1| threonyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|283790583|gb|EFC29400.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817366|gb|ADC37853.1| Threonyl-tRNA synthetase [Staphylococcus aureus 04-02981]
 gi|290919959|gb|EFD97027.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095223|gb|EFE25488.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466463|gb|EFF08984.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|294824730|gb|EFG41153.1| threonyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|294968990|gb|EFG45011.1| threonyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|295127654|gb|EFG57291.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887621|gb|EFH26519.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297178161|gb|EFH37409.1| threonyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|297575669|gb|EFH94385.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|300887107|gb|EFK82308.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333348|gb|ADL23541.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751509|gb|ADL65686.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340725|gb|EFM06656.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312437859|gb|ADQ76930.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH60]
 gi|312830061|emb|CBX34903.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130684|gb|EFT86670.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195587|gb|EFU25974.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198621|gb|EFU28949.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140439|gb|EFW32293.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143977|gb|EFW35746.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314355|gb|AEB88768.1| Threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329727674|gb|EGG64130.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus 21172]
          Length = 645

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 161/445 (36%), Gaps = 33/445 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++   M+  P +      I+ +  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++    +
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMII 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDD 241
            ++   G +    R                  D  + + +   D   +          D+
Sbjct: 408 DVYKDFGFEDYSFRLS--------------YRDPEDKEKYFDDDDMWNKAENMLKEAADE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  ++ + + +S   ++    F    ++      T
Sbjct: 454 LGLSYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERFD----LT 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G DG+ H   +     G +  +   +    +     +P  +AP ++ +I +     + 
Sbjct: 503 YIGQDGEHHRPVVIHR--GVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNV--DLH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++  
Sbjct: 559 YDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +  +E +  +E I          +
Sbjct: 619 GSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|315126673|ref|YP_004068676.1| prolyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
 gi|315015187|gb|ADT68525.1| prolyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
          Length = 574

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 132/294 (44%), Positives = 172/294 (58%), Gaps = 2/294 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYILATLKETPSDAEIVSHQLMLRAGMIRRVASGLYTWLPSGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GAIEM +P +Q ADLW ESGR+  +G E++R  DR+++    GPTHEEV+TD  R 
Sbjct: 61  MDKAGAIEMLMPVIQPADLWEESGRWSEFGPELMRFTDRHNREFAMGPTHEEVITDFVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQ+Q K RDE RPRFGVMR+REF MKDAYSF LT E    +Y  M  +
Sbjct: 121 EINSYKQLPITLYQVQTKVRDERRPRFGVMRAREFTMKDAYSFHLTDECLDATYQVMHKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-F 239
           Y  IF RLGL   P+ A++G IGG +SHEF VLA++GE  +  S    D+    E  +  
Sbjct: 181 YCNIFERLGLDFRPVIADTGSIGGSVSHEFHVLAESGEDAIAFSD-ASDYAANIEKAEAL 239

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
               S     ++  A     +   NE       +  R     I  G     G +
Sbjct: 240 APTESRPQASKELKAFPTPDAKTINELKKHYGVKPHRGVKTLIVYGAPDEDGKR 293



 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/189 (35%), Positives = 101/189 (53%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D     +      RGIEVGHIF  GTKYS  M A      GK+  + MG
Sbjct: 385 EVADIRNIVEGDPSPCGQGTLQIKRGIEVGHIFQLGTKYSEAMKAGVLSESGKNQTMTMG 444

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D  GI WP ++APF ++++ +         D    +Y  L  
Sbjct: 445 CYGIGVSRVVAAAIEQNNDQYGITWPKAIAPFDLAIVPMNMHKSHRIPDIANNLYQGLKD 504

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV +DD  E+ G  F   +LLG P  +++G + + ++KVE+K+R TG +  + ++  
Sbjct: 505 AGLDVLFDDRKERPGVMFNDMELLGVPYTLVIGERNLDENKVELKNRRTGEKLMIDIDSA 564

Query: 435 INYASHRFS 443
           I    ++F+
Sbjct: 565 IETIKNQFN 573


>gi|88195489|ref|YP_500293.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|123003455|sp|Q2FXP7|SYT_STAA8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|87203047|gb|ABD30857.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|329728437|gb|EGG64874.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus 21189]
          Length = 645

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 161/445 (36%), Gaps = 33/445 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++   M+  P +      I+ +  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++    +
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMII 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDD 241
            ++   G +    R                  D  + + +   D   +          D+
Sbjct: 408 DVYKDFGFEDYSFRLS--------------YRDPEDKEKYFDDDDMWNKAENMLKEAADE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  ++ + + +S   ++    F    ++      T
Sbjct: 454 LGLSYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERFD----LT 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G DG+ H   +     G +  +   +    +     +P  +AP ++ +I +     + 
Sbjct: 503 YIGQDGEHHRPVVIHR--GVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNV--DLH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++  
Sbjct: 559 YDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +  +E +  +E I          +
Sbjct: 619 GSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|289661762|ref|ZP_06483343.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 636

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 139/438 (31%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 234 YILRMEEADKRDHRRIGRAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 292 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 351 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIESEVTAFHQQALAV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P                           D    +  +       
Sbjct: 410 YTAFGFDDIQIKIALRPEKR-----------------LGDDATWDKAEAALRSALGVCGV 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L D++    ++    ++       G        A +  
Sbjct: 453 EWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 501

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   V    +++           +
Sbjct: 502 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSWLAPVQVVVVNIT------DAQAE 555

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     L   P  ++VG +   +  V ++ R  
Sbjct: 556 YVDSVRKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSG 615

Query: 424 GIREDMSLEEVINYASHR 441
                M++   I      
Sbjct: 616 EDLGTMTVSAFIERLQAE 633


>gi|322420273|ref|YP_004199496.1| prolyl-tRNA synthetase [Geobacter sp. M18]
 gi|320126660|gb|ADW14220.1| prolyl-tRNA synthetase [Geobacter sp. M18]
          Length = 573

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 133/282 (47%), Positives = 179/282 (63%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P ++E P DAE+ SHKLMLR GMI + + GIY++LPLG +++  V  I+REE
Sbjct: 1   MRYSQYFIPTVKETPSDAEVISHKLMLRAGMIRKLAAGIYNYLPLGLRSIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR+D YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWKESGRWDFYGKELLRFKDRKDAEFCMGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR +P   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  SY KM+ +
Sbjct: 121 EIRSYRQMPINLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDVNEAGADVSYEKMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK   + A++G IGG+ SHEF+VLAD+GE  +       ++    E  +  
Sbjct: 181 YRRIFERCGLKFRAVEADTGTIGGNYSHEFMVLADSGEDAIVSCSCC-EYAANMEKAETK 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              ++     +     A       E +   L  N     + +
Sbjct: 240 RSEAVEHADPRPMEHVATPGQKSIEDVSAFLGVNNTQVVKTL 281



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 74/175 (42%), Positives = 107/175 (61%), Gaps = 3/175 (1%)

Query: 260 SDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            D+ N  + D+ P     K    RGIEVGH+F  GTKYS  ++A+F  A+GK+  + MG 
Sbjct: 382 VDIRNVVIGDACPRCESGKLEIWRGIEVGHVFKLGTKYSKALNASFLDANGKEQIIFMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R VAA IE +HD  GII+P  +APF   +  + A +   + A E+IY+ L + G
Sbjct: 442 YGIGIGRTVAACIEQNHDENGIIFPIPIAPFHCIVSALSAKEDEVKAASEQIYSELLEAG 501

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            +V  DD  E+ G +F  ADL+G PL+++VG+K + D KVE+K R +G  E + +
Sbjct: 502 VEVLLDDRDERPGFKFKDADLIGIPLRLVVGAKNLVDGKVELKERRSGEVEILPI 556


>gi|295706837|ref|YP_003599912.1| threonyl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294804496|gb|ADF41562.1| threonyl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 645

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 154/438 (35%), Gaps = 36/438 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRLLEEAKERDHRKLGKELNLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEVSLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y  +M    + +++ ++  P +      +++  I SYR
Sbjct: 296 QHVYTPVLGSVELYKTSGHWEHYQDDMFPAMEMDNEDLVLRPMNCPHHMMVYKQGIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K  + ++      ++ 
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEEFIRVVRLVEAVYK 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISL 245
             G ++   R                  D  +T+ +   D M     S      D++   
Sbjct: 416 DFGFENYSFRLS--------------YRDPADTEKYFDDDAMWEKAQSMLKDAMDELDLD 461

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  +L + + +S   ++    F    ++      T+ G 
Sbjct: 462 YYEAEGEAAFYGPKLDV---QVKTALGKEETLSTVQLD----FLLPERFD----LTYVGE 510

Query: 306 DGKDHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           DGK H   +   G+     R VA +IE                       +         
Sbjct: 511 DGKQHRPVVIHRGVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSPTV------HLQ 564

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G  V  D   E+IG +   A +   P  ++VG K V D  V ++    
Sbjct: 565 YAKEVQEQLQLAGIRVELDSRDEKIGYKIREAQMQKIPYMLVVGDKEVEDKAVNVRKYGE 624

Query: 424 GIREDMSLEEVINYASHR 441
              E +  +  +      
Sbjct: 625 QNSETVDFQAFLQNVKAE 642


>gi|284006267|emb|CBA71503.1| threonyl-tRNA synthetase [Arsenophonus nasoniae]
          Length = 640

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 141/443 (31%), Gaps = 42/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L    + + + G+  W   G      +   IR + N   
Sbjct: 232 YLLRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWVIFRELETFIRTKLNEYR 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPLMMDRILWEKTGHWENYKENMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +               +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEDQILTE-VKSCIKMIYHV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P                      +    D           DI  
Sbjct: 408 YATFGFEKIAVKLSTRPEKR-----------------IGTDAQWDRAESDLAKALGDIEF 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    +     L+D L    +     ++       G        A++  
Sbjct: 451 DYQPGEG--AFYGPKIEF---TLYDCLDRAWQCGTVQLDFSLPSRLG--------ASYVD 497

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G++     ++   + G    W   +    I++           D
Sbjct: 498 ENNERQVPVMIHRAVLGSLERFIGILTEQYAGFFPTWLAPLQIVIINIT------DAQAD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+  +LS  G  V  D   E+IG +     L   P  ++ G K V  ++V ++ R  
Sbjct: 552 FVQKVVKKLSNFGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESNQVSVRTRDG 611

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                  + E            R
Sbjct: 612 KDLGTFDVTEFAERVLDEIRTRR 634


>gi|282906079|ref|ZP_06313934.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282331371|gb|EFB60885.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
          Length = 645

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 161/445 (36%), Gaps = 33/445 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++   M+  P +      I+ +  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++    +
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMII 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDD 241
            ++   G +    R                  D  + + +   D   +          D+
Sbjct: 408 DVYKDFGFEDYSFRLS--------------YRDPEDKEKYFDDDDMWNKAENMLKEAADE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  ++ + + +S   ++    F    ++      T
Sbjct: 454 LGLSYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERFD----LT 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G DG+ H   +     G +  +   +    +     +P  +AP ++ +I +     + 
Sbjct: 503 YIGQDGEHHRPVVIHR--GVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNV--DLH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++  
Sbjct: 559 YDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +  +E +  +E I          +
Sbjct: 619 GSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|83647457|ref|YP_435892.1| prolyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
 gi|114152199|sp|Q2SD07|SYP_HAHCH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|83635500|gb|ABC31467.1| prolyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
          Length = 574

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 123/237 (51%), Positives = 167/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +  L+E P DAE+ SH+LMLR GMI + + G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRASRYLIATLKETPADAEVISHQLMLRAGMIRKLAAGLYTWLPLGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +P +Q A+LW+ESGR++ YG E+LR+ DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDRSGAQEVLMPAVQPAELWIESGRWEQYGGELLRIHDRHNRDFCVGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ+KFRDE RPRFG+MR+REFLMKDAYSF +  E    +Y  M+ +
Sbjct: 121 ELKSYKQLPANFYQIQMKFRDERRPRFGIMRAREFLMKDAYSFHVNQESLDETYMVMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL   P++A+SG IGG  SHEF VLA++GE  +       D+    E  
Sbjct: 181 YTRIFTRFGLDFRPVQADSGSIGGSSSHEFHVLANSGEDLIAF-STESDYAANLEKA 236



 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/197 (39%), Positives = 113/197 (57%), Gaps = 3/197 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                   T+D+ N    D  P+ K   V  +GIEVGH+F  G KYS  M+AT    +GK
Sbjct: 378 GRDCEIKETADLRNVVEGDLSPDGKGVLVLKKGIEVGHVFKLGDKYSSAMNATVLDENGK 437

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              +QMG YGIG  RVVAA IE  HD KGIIWPD++APF+++L+ +      V R+  E 
Sbjct: 438 ATVMQMGCYGIGVSRVVAAAIEQGHDDKGIIWPDALAPFEVALVPLNMHKSDVVREKAES 497

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA L + G DV  DD  E+ G +FA  +L+G P +V++  + +++ KVE K R      
Sbjct: 498 LYAELLQAGVDVLLDDRNERPGVKFAEMELIGIPHRVVISDRGLAEGKVEYKGRRDTDST 557

Query: 428 DMSLEEVINYASHRFSN 444
           DM+++ V+N+   +   
Sbjct: 558 DMTVDTVVNFIKEKLKK 574


>gi|292491210|ref|YP_003526649.1| prolyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
 gi|291579805|gb|ADE14262.1| prolyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
          Length = 575

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 120/231 (51%), Positives = 160/231 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAEI SH+LMLR G I + + G+Y+WLPLG + L  V  IIREE
Sbjct: 1   MRTSQYLLTTTRETPADAEIISHQLMLRGGFIRRLAAGLYTWLPLGLRVLRKVEGIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +P +Q A+LW E+GR++ YG E+LR  DR+ +   +GPTHEEV+TD+ R 
Sbjct: 61  MDKAGAQEILMPAVQPAELWQETGRWEQYGPELLRFTDRHQRPFCFGPTHEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ+KFRDE+RPRFGVMR+REFLMKDAYSF L     + +Y +M+ +
Sbjct: 121 EIRSYKQLPANFYQIQVKFRDEIRPRFGVMRAREFLMKDAYSFHLDQTSLEQTYQQMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R+GL    ++A++G IGG  SHEF VLA +GE  +  S       
Sbjct: 181 YSRIFERIGLTFRAVQADTGAIGGQTSHEFHVLAASGEDAIAFSDKGTYAA 231



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/196 (36%), Positives = 103/196 (52%), Gaps = 3/196 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P   T+D+      D  P+ +     ARGIEVGHIF  G KYS  M+ T     G+   +
Sbjct: 377 PEPITADIRKVVDGDPSPDGEGFLSIARGIEVGHIFQLGEKYSQAMNTTVLDETGQAIIL 436

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD  GIIWPD +APF+++L+ I AH  V  R+  +++Y++
Sbjct: 437 TMGCYGIGVSRVVAAAIEQNHDEHGIIWPDPIAPFQLALVPINAHKSVRVRETADQLYSQ 496

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V  DD   + G  F   DL+G P ++++  + +    VE K R  G    + L
Sbjct: 497 LQAAGFEVLLDDRQLRPGVIFTDMDLIGIPHRLVISDRGLDAGTVEYKRRRDGKTSTIQL 556

Query: 432 EEVINYASHRFSNNRP 447
           + +I           P
Sbjct: 557 DNLIPGLKSELKTPIP 572


>gi|300023294|ref|YP_003755905.1| threonyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525115|gb|ADJ23584.1| threonyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 650

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 153/440 (34%), Gaps = 34/440 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      ++ L      + + G   W   G      + A +R +Q R
Sbjct: 232 KAYLHQLEEAEKRDHRKLGREMDLF--HFQEEAPGSVFWHAKGWTLFQTLIAYMRRQQQR 289

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E++ P +     W  SG +++YG+ M      +++     P +      I+++ +K
Sbjct: 290 AGYEEVNSPDMMEKHFWELSGHWENYGENMFTTVLPDERVFCCKPMNCPGHVQIYKNGLK 349

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP+   +     R E      G++R R F   DA+ F    +  +          L
Sbjct: 350 SYRDLPYRIAEFGKVHRYEPSGALHGMLRVRHFTQDDAHIFLTEDQIMEECLKIN-DLML 408

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G + I ++  + P     + E    A+     V             E     + 
Sbjct: 409 SIYKDFGFEEIVIKLSTRPEKRVGADELWDKAEKALGDVL-----------DEVKRRSNG 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
           +    I     A Y    +     L D++  + +     ++       G        A +
Sbjct: 458 LIKTEIQPGEGAFYGPKLEY---VLKDAIGRDWQCGTTQVDFNLAGRLG--------AFY 506

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                +      +     G++     ++  +  G   +W   +      ++         
Sbjct: 507 IDEHSEKKTPVMVHRAMFGSLERFTGILIENFAGHFPLWLAPLQIVVAPIV------SDA 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +   +G  V  D   E+I  +     L   P+ ++VG +   + KV ++  
Sbjct: 561 NDYANEVAQKAKALGLRVETDLRNEKINYKVREHSLAKVPVLLVVGKREAEERKVSVRRL 620

Query: 422 LTGIREDMSLEEVINYASHR 441
            +  +  MSL++ +   +  
Sbjct: 621 GSQDQTVMSLDDALKSLAAE 640


>gi|261493242|ref|ZP_05989769.1| threonine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496515|ref|ZP_05992895.1| threonine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307718|gb|EEY09041.1| threonine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311092|gb|EEY12268.1| threonine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 643

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 143/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLQRLEEAAKRDHRRIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 EYDYQEVKGPFMMDRVLWEKTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEEQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P                           D           +
Sbjct: 405 YDIYSTFGFTNIAVKLSTRPENR-----------------IGDDAMWDRAEEGLANALRN 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                A+
Sbjct: 448 NGLEYEIQEGEGAFYGPKIEF---ALRDCLGREWQCGTVQLDFALPGRL--------EAS 496

Query: 302 FKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    +G+   V +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +++  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QADYVQQVVKQLSDAGIRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R         + +++    ++    
Sbjct: 611 RKGADLGTYLVSDLVEILKNQIKAR 635


>gi|301794619|emb|CBW37067.1| threonyl-tRNA synthetase [Streptococcus pneumoniae INV104]
          Length = 647

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 156/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTDYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QIKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG+DH   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S++  +       +N 
Sbjct: 619 GQKETQTVSVDNFVQAILADIANK 642


>gi|260582696|ref|ZP_05850484.1| threonyl-tRNA synthetase [Haemophilus influenzae NT127]
 gi|260094262|gb|EEW78162.1| threonyl-tRNA synthetase [Haemophilus influenzae NT127]
          Length = 643

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 144/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 QYDYQEVKGPFMMDRVLWEKTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P     S E                   D            
Sbjct: 405 YDIYSTFGFTNIAVKLSTRPENRIGSDE-----------------MWDRAEAGLAAALAH 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                AT
Sbjct: 448 NGLEYEIQEGEGAFYGPKIEF---ALRDCLGREWQCGTVQLDFALPGRLD--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE      ++  + 
Sbjct: 611 RKGADLGTFTVEEFAEILKNQVRSR 635


>gi|332686097|ref|YP_004455871.1| threonyl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
 gi|332370106|dbj|BAK21062.1| threonyl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
          Length = 647

 Score =  252 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 163/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   MI  +   G+  WLP G      +   I +++   
Sbjct: 232 FIKMQEEAKERDHRKLGKELDLF--MISQEVGSGLPFWLPKGATIRRTIERYITDKEISL 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P + + DL+  SG +  Y ++M    D  D  M +  P +      +++  + 
Sbjct: 290 GYQHVYTPIMANVDLYKTSGHWAHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKDTVH 349

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + ++    L 
Sbjct: 350 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKEEFKRILELMLA 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D      +   D M     +      D++
Sbjct: 410 VYKDFNITDYKFRLS--------------YRDPNNKDKYFDDDAMWTKAQTMLKGAMDEL 455

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 456 KLDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 504

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++++  +  +  G +  +   +    +     +P  +AP + ++I +        
Sbjct: 505 IGEDGENNHRPVVIHR-GIVSTMERFVSYLIEVYKGAFPLWLAPIQATIIPVSV--DAHS 561

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +   RL   G  +  DD  E++G +   +     P Q++VG K V DS V I+H  
Sbjct: 562 DYAYETKERLQMRGLRIEVDDRNEKMGYKIRASQTQKIPYQIVVGDKEVDDSTVTIRHYG 621

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +   E M+L   I+      SN 
Sbjct: 622 SKETEVMALNLFIDSLIAEISNY 644


>gi|307705352|ref|ZP_07642214.1| threonyl-tRNA synthetase [Streptococcus mitis SK597]
 gi|307621139|gb|EFO00214.1| threonyl-tRNA synthetase [Streptococcus mitis SK597]
          Length = 647

 Score =  252 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 157/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYGDFNLNEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + + +++ +       +N 
Sbjct: 619 GQKETQTVLVDDFVQAILADIANK 642


>gi|239994929|ref|ZP_04715453.1| prolyl-tRNA synthetase [Alteromonas macleodii ATCC 27126]
          Length = 440

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 122/235 (51%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLATQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPSGLRVLNKVANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW ESGR++ YG E+LR+ DR+ +  + GPTHEEV+T + R+
Sbjct: 61  MNKAGAIEVLMPVVQPADLWEESGRWEEYGPELLRIKDRHQRDFVLGPTHEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE+RPRFG+MR REF MKDAYSF L     + +Y KM+ +
Sbjct: 121 EISSYKQLPLNLYQIQTKFRDEVRPRFGIMRGREFTMKDAYSFHLEDSCLEETYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R+GL    + A+SG IGG+ SHEF VLA +GE  +  S D  D+    E
Sbjct: 181 YCNIFSRMGLDFRAVIADSGSIGGNHSHEFHVLAASGEDDIAFSSD-SDYAANVE 234



 Score = 42.0 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            D+ N    D+ P+ K      RGIEVGHIF  G+KYS  M+       GK  
Sbjct: 388 VDIRNVVAGDASPDGKGTLDIKRGIEVGHIFQLGSKYSEAMNCGVLSESGKHQ 440


>gi|256819829|ref|YP_003141108.1| threonyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
 gi|256581412|gb|ACU92547.1| threonyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
          Length = 647

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 82/437 (18%), Positives = 152/437 (34%), Gaps = 36/437 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T   ++  +G+  WLP G    + + A +R+ Q + G  ++  P
Sbjct: 237 AKKRDHRKLGKELELFT-FSNKVGQGLPLWLPKGAALRERLEAFLRKAQKQAGYEQVVTP 295

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG +D YGK+  +        +  +  P +     +I+ SH  SY++LP 
Sbjct: 296 HIGHKNLYVTSGHWDKYGKDSFQPIATPNEGEEYLLKPMNCPHHCEIYNSHPWSYKDLPK 355

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +    +R E      G+ R R F   DA+ F  TPE     +  +    L +F  LG
Sbjct: 356 RFAEFGTVYRYEQSGELHGLTRVRCFTQDDAHIFC-TPEQLDDEFKHVIDLVLYVFGSLG 414

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +   +                      T+   S +       +      +      I 
Sbjct: 415 FDNFTAQVSLRD-------------PENPTKYIGSDENWAKAENAIINAAKEKGLSYVIE 461

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D     + D+L  + ++    ++                  +KGAD + 
Sbjct: 462 TGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERFDLWYKGADNEM 510

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H    +     G+M    A++     G   +W         S   + +  +   +  +K+
Sbjct: 511 HRPVMIHRAPFGSMERFVAILLEHTAGNFPLW------LNPSQAIVLSLSEKYENYAQKV 564

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L         D+  E +G +   A+    P  +IVG     +  V ++ R       
Sbjct: 565 LRLLENSDIRTLIDNRAETMGKKIREAETQKIPYMLIVGENEEKEGTVSVRKRGGEDLGS 624

Query: 429 MSLEEVINYASHRFSNN 445
           MS+E      +   + +
Sbjct: 625 MSVEAFAKLINDEVAKS 641


>gi|145636075|ref|ZP_01791745.1| threonyl-tRNA synthetase [Haemophilus influenzae PittHH]
 gi|229844174|ref|ZP_04464315.1| threonyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
 gi|145270597|gb|EDK10530.1| threonyl-tRNA synthetase [Haemophilus influenzae PittHH]
 gi|229813168|gb|EEP48856.1| threonyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
          Length = 643

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 144/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 QYDYQEVKGPFMMDRVLWEKTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P     S E                   D            
Sbjct: 405 YDIYSTFGFTNIAVKLSTRPENRIGSDE-----------------MWDRAEAGLAAALAH 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                AT
Sbjct: 448 NGLEYEIQEGEGAFYGPKIEF---ALRDCLGREWQCGTVQLDFALPGRLD--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE      ++  + 
Sbjct: 611 RKGADLGTFTVEEFAEILKNQVRSR 635


>gi|226944147|ref|YP_002799220.1| threonyl-tRNA synthetase [Azotobacter vinelandii DJ]
 gi|259516344|sp|C1DF42|SYT_AZOVD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226719074|gb|ACO78245.1| threonyl-tRNA synthetase [Azotobacter vinelandii DJ]
          Length = 640

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 146/442 (33%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R  Q   G
Sbjct: 231 YIQRIEEAEKRDHRKLGKRLDLF--HTQEEAPGMVFWHPNGWTVYQVLEQYMRAVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y + M    +   +     P +      ++   +KSY
Sbjct: 289 YLEIKTPQVVDRVLWEKSGHWANYAENMFT-TESESRDYAIKPMNCPCHVQVYNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S         ++
Sbjct: 348 RELPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEEQMQAES-AAFIKLTRQV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D    +     +    
Sbjct: 407 YADFGFQDIQLKLSTRPERRVGSGE-----------------LWDRAEEALAAALESAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++       G        A +  
Sbjct: 450 PYELQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLDFNLPVRLG--------AEYVS 498

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  + H V +    +G+      ++   ++     +P  +AP +  ++NI        +
Sbjct: 499 ENNERQHPVMLHRAILGSFERFIGILIEHYE---GAFPAWLAPTQAVIMNITDK---QGE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L++ G     D   E+IG +     LL  P  +++G + V    V ++ R  
Sbjct: 553 FALEVERTLNQGGFRAKCDLRNEKIGFKIREHTLLKVPYLLVIGDREVETHSVAVRTREG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M +E+     +   +  
Sbjct: 613 VDLGTMPVEQFREMLAQAVARR 634


>gi|167855812|ref|ZP_02478565.1| leucyl-tRNA synthetase [Haemophilus parasuis 29755]
 gi|167853091|gb|EDS24352.1| leucyl-tRNA synthetase [Haemophilus parasuis 29755]
          Length = 643

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 145/441 (32%), Gaps = 38/441 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +  +  
Sbjct: 232 YLHRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G + +Y  +++      ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWQNY-GDLMFTTQSENREYAIKPMNCPGHIQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F +  +               I
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCMPEQVESE-VTSCIKMVYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G ++I ++  + P     + E    A+                             
Sbjct: 408 YSTFGFENIQVKLSTRPANSIGTDEMWNKAEA-----------------DLAAALTANGL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    +     L D L    +     ++    F+   + S    A    
Sbjct: 451 AFEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTIQLD----FFLPERLSASYVAE--- 500

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +   V +    +G++     +I   + G    W   V    +++           + 
Sbjct: 501 DNNRKTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPVQAVVMNIT------DSQAEY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV ++ R   
Sbjct: 555 VQQVVKQLSDAGLRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTRKGA 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
                 +EE +     +    
Sbjct: 615 DLGTYKVEEFVEMLKKQVRGR 635


>gi|251781963|ref|YP_002996265.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390592|dbj|BAH81051.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323126789|gb|ADX24086.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 647

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 157/448 (35%), Gaps = 36/448 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKEL 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M  + D  D +  +  P +      ++++H
Sbjct: 285 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPVMDMGDGEEFVLRPMNCPHHIQVYKNH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + D + F    +     + +    
Sbjct: 345 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHIFVTPEQIRDE-FKRTLQL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + ++    L     R            +     D  E          +          D
Sbjct: 404 IIDVYEDFNLTDYRFRLS-----YRDPEDTHKYYDNDEM--------WENAQAMLKGAMD 450

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 451 DMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 499

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I             +          I   ++ 
Sbjct: 500 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPHQV----TVIPISNEA 555

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L   G     DD  E++  +   +     P Q+IVG K + +  V ++ 
Sbjct: 556 HIDYAWEVAKTLRDRGVRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEEKSVNVRR 615

Query: 421 RLTGIREDMSLEEVINYASHRF-SNNRP 447
             +      S+E+ +          +RP
Sbjct: 616 YGSKATHTESVEDFVENILVDIARKSRP 643


>gi|240949517|ref|ZP_04753857.1| threonyl-tRNA synthetase [Actinobacillus minor NM305]
 gi|240296090|gb|EER46751.1| threonyl-tRNA synthetase [Actinobacillus minor NM305]
          Length = 643

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 141/441 (31%), Gaps = 38/441 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  +G + +Y  +++      ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWERTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +            I
Sbjct: 349 RDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEEQIESEVTSCIKMVYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G ++I ++  + P                           D           +   
Sbjct: 408 YSTFGFENIAVKLSTRPENR-----------------IGDDAMWDRAEEGLANALRNNGL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    +     L D L    +     ++    F    +      A    
Sbjct: 451 EYEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTVQLD----FALPGRLDASYVAE--- 500

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            +G+   V +    +G++     +I   + G    W   V    +++           + 
Sbjct: 501 DNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPVQAVVMNIT------DSQAEY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV ++ R   
Sbjct: 555 VQKVVKQLSDAGLRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTRKGA 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
                 +EE +     +    
Sbjct: 615 DLGTYKVEEFVEILKSQVRGR 635


>gi|221194423|ref|ZP_03567480.1| threonyl-tRNA synthetase [Atopobium rimae ATCC 49626]
 gi|221185327|gb|EEE17717.1| threonyl-tRNA synthetase [Atopobium rimae ATCC 49626]
          Length = 588

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 152/442 (34%), Gaps = 44/442 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      ++ L   M+     G   WLP G    + +     E   +   
Sbjct: 185 LKMLEEAEKRDHRKIGREMELF--MMSDFGPGSPFWLPNGMAVRNALTDYWHEMMVKFNY 242

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + S  LW  SG +D Y + M      +++     P +      I+++  +SYR
Sbjct: 243 EEVLTPQILSRSLWETSGHWDHYKENMYT-TSVDEEDFAIKPMNCPGACLIYKNRPRSYR 301

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +  L  R E++    G+ R REF   DA+ F    + ++   +      +  +
Sbjct: 302 DLPLKLAEAGLDHRYEMKGALHGLFRVREFTQDDAHIFIRPDQITEQVADAS--HLITAY 359

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           +        +   + P     S E    A+ G                      + +   
Sbjct: 360 YAQFGFPYRVELSTRPENSMGSDEDWERAEQG-----------------LKDALESMGID 402

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             + E   A Y    D H   L D L  + +     ++      F           +  +
Sbjct: 403 YVLNEGDGAFYGPKIDFH---LTDCLGRSWQCGTIQLDFQLPHNF--------ELEYVDS 451

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG K   + +   G G+      ++   ++GK  +W        + +       +  R+ 
Sbjct: 452 DGTKKQPIMIHRAGFGSFDRFIGILTEHYEGKFPVWLAPCQVKVLPV------SEKSREY 505

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVA-DLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++   L   G  V  D+  E+IG +   A  L   P  +I+G K V    + ++ R +
Sbjct: 506 AHEVAGALQAAGIRVKVDNRDEKIGYKIREARSLDRVPYMLIIGEKEVEAHNISVRDR-S 564

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                 +L+  I   S      
Sbjct: 565 NETVQSTLDAFIAKVSKENDER 586


>gi|165975675|ref|YP_001651268.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|190149490|ref|YP_001968015.1| threonyl-tRNA synthetase ThrS [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303251658|ref|ZP_07337831.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307251749|ref|ZP_07533652.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307260677|ref|ZP_07542367.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|307262809|ref|ZP_07544434.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|238687519|sp|B0BSM2|SYT_ACTPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238692375|sp|B3H061|SYT_ACTP7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|165875776|gb|ABY68824.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|189914621|gb|ACE60873.1| threonyl-tRNA synthetase ThrS [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302649500|gb|EFL79683.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860750|gb|EFM92760.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306869598|gb|EFN01385.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306871824|gb|EFN03543.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 643

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 138/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRRIGKALDLY--HMQEEAPGLVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW  +G + +Y  +++      ++     P +      IF   +
Sbjct: 287 EYDYQEVKGPFMMDRVLWERTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIRMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P                           D            
Sbjct: 405 YDIYSTFGFSNIQVKLSTRPENR-----------------IGDDAMWDRAEDGLAKALTA 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                A+
Sbjct: 448 NGLSYEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTIQLDFALPGRLD--------AS 496

Query: 302 FKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    +G+   V +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   LS  G     D   E++G +     L   P  ++ G K +   KV ++ 
Sbjct: 551 QADYVQKVTKALSDAGIRAKSDLRNEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVSVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        +++E +    ++    
Sbjct: 611 RKGADLGTFTIDEFVEILKNQVKAR 635


>gi|309973051|gb|ADO96252.1| Threonyl-tRNA synthetase [Haemophilus influenzae R2846]
          Length = 643

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 144/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 QYDYQEVKGPFMMDRVLWEKTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P     S E                   D            
Sbjct: 405 YDIYSTFGFTNIAVKLSTRPENRIGSDE-----------------MWDRAEAGLAAALAH 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                AT
Sbjct: 448 NGLEYEIQEGEGAFYGPKIEF---ALRDCLGREWQCGTVQLDFALPGRLD--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE      ++  + 
Sbjct: 611 RKGADLGTFTVEEFAEILKNQVRSR 635


>gi|229102972|ref|ZP_04233661.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228680387|gb|EEL34575.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
          Length = 640

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 154/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMGQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++  +L++ G  +  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYANEVADKLAQAGVRIERDMRDEKLGYKIREAQMQKIPYVLVIGDKEMENGSVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E ++L+           N +
Sbjct: 616 EEKSEVVALDVFAASMEEEIKNRK 639


>gi|148994898|ref|ZP_01823919.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|148997679|ref|ZP_01825243.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|149006698|ref|ZP_01830384.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|149021279|ref|ZP_01835525.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168483499|ref|ZP_02708451.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|168487280|ref|ZP_02711788.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|168488656|ref|ZP_02712855.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|168491490|ref|ZP_02715633.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|168575182|ref|ZP_02721145.1| threonyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|169834472|ref|YP_001695022.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|225859387|ref|YP_002740897.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|225861459|ref|YP_002742968.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229236|ref|ZP_06962917.1| threonyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254509|ref|ZP_06978095.1| threonyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|307068259|ref|YP_003877225.1| threonyl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|307127841|ref|YP_003879872.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
 gi|238688351|sp|B1I703|SYT_STRPI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783538|sp|C1C8M1|SYT_STRP7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783543|sp|C1CSP6|SYT_STRZT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|147756178|gb|EDK63220.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|147761613|gb|EDK68577.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|147926966|gb|EDK78011.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|147930380|gb|EDK81364.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168996974|gb|ACA37586.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|172043101|gb|EDT51147.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|183569836|gb|EDT90364.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|183572780|gb|EDT93308.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|183574162|gb|EDT94690.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|183578687|gb|EDT99215.1| threonyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|225720074|gb|ACO15928.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|225727271|gb|ACO23122.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|306409796|gb|ADM85223.1| Threonyl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|306484903|gb|ADM91772.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
 gi|327389816|gb|EGE88161.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA04375]
 gi|332072464|gb|EGI82947.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA17570]
 gi|332072798|gb|EGI83279.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA17545]
 gi|332073965|gb|EGI84443.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA41301]
 gi|332199661|gb|EGJ13736.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA41317]
 gi|332200192|gb|EGJ14265.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA47368]
          Length = 647

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 156/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTDYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QIKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG+DH   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S++  +       +N 
Sbjct: 619 GQKETQTVSVDNFVQAILADIANK 642


>gi|332141950|ref|YP_004427688.1| prolyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551972|gb|AEA98690.1| prolyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 572

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 121/235 (51%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLATQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPSGLRVLNKVANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW ESGR++ YG E+LR+ DR+ +  + GPTHEEV+T + R+
Sbjct: 61  MNKAGAIEVLMPVVQPADLWEESGRWEEYGPELLRVKDRHQRDFVLGPTHEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q KFRDE+RPRFG+MR REF MKDAYSF L     + +Y KM+ +
Sbjct: 121 EISSYKQLPLNLYQVQTKFRDEVRPRFGIMRGREFTMKDAYSFHLEDSCLEETYQKMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R+GL    + A+SG IGG+ SHEF VLA++GE  +  S D  D+    E
Sbjct: 181 YCAIFSRMGLDFRAVIADSGSIGGNHSHEFHVLAESGEDAIAFSSD-SDYAANVE 234



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 69/186 (37%), Positives = 102/186 (54%), Gaps = 3/186 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T D+ N    D+ P+ +      RGIEVGHIF  G KYS  M+       GK   + MG 
Sbjct: 387 TVDIRNVVAGDASPDGQGTLDIKRGIEVGHIFQLGRKYSEAMNCGVLSETGKHQTLTMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKV 375
           YGIG  R+VAA IE +HD  GI WPD +APFKI+LI +        ++A E +Y  L  +
Sbjct: 447 YGIGVSRIVAAAIEQNHDKFGIKWPDPIAPFKIALIPMNMHKSHRIKEAVEALYEELVAL 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V +DD  E+ G  F   +L+G P  +++G + + + +VE K+R TG ++ + L    
Sbjct: 507 GIEVLFDDRKERPGVMFNDMELIGIPHSIVIGERNLDNQQVEYKNRRTGEKQLLDLSAAK 566

Query: 436 NYASHR 441
            + +  
Sbjct: 567 EFVAAL 572


>gi|312868227|ref|ZP_07728427.1| threonine--tRNA ligase [Streptococcus parasanguinis F0405]
 gi|311095972|gb|EFQ54216.1| threonine--tRNA ligase [Streptococcus parasanguinis F0405]
          Length = 647

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 158/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     + PE  +  + K+    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVAPEQIEEEFKKILQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          DD
Sbjct: 407 IDVYEDFNLTDYRFRLS-----YRDPEDKHKYFDNDEM--------WENAQRMLKAAVDD 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++ L     
Sbjct: 454 MGVEYYEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFDLH---- 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDKAVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                E MS++  +       +N 
Sbjct: 619 GQKETETMSVDAFVELILADIANK 642


>gi|93355883|gb|ABF09972.1| prolyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 614

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 126/276 (45%), Positives = 171/276 (61%), Gaps = 3/276 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V  I+REE
Sbjct: 42  MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYNYMPVGLRVIRKVENIVREE 101

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+S+P +Q A+LW E+GR+D  G E+LRL DR+++     PT EEV+TDI R+
Sbjct: 102 MNRAGAVELSMPVIQPAELWQETGRWDKMGPELLRLKDRHERDFAVQPTSEEVVTDIART 161

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   +G K SY  M+ +
Sbjct: 162 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDIDGLKASYQNMYDA 221

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF R GL+   + A++G IGG  SHEF V+ADTGE  +                   
Sbjct: 222 YVRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYCPTSDYAANMEAAEALP 281

Query: 241 DIISLNSIVEQWTA---PYAATSDVHNEKLFDSLPE 273
            + +  +  E+      P  A  +   E L   L  
Sbjct: 282 LLATRAAPAEELKKTSTPEKAKCEHVAEFLGIPLER 317



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 68/172 (39%), Positives = 102/172 (59%), Gaps = 3/172 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P  A +D+ N    D+ P+ K      RGIEVGH+F  GT+YS  M+ATF   +GK   +
Sbjct: 422 PEPAVADLRNVVAGDASPDGKGTLDICRGIEVGHVFMLGTRYSESMNATFLDENGKTQPM 481

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  R++ A IE ++D +GIIWP ++APF + +  +    ++  +   ++I+A 
Sbjct: 482 QMGCYGIGVTRILGAAIEQNYDERGIIWPAAIAPFAVVVCPVGYDRNEAVKAEADRIHAE 541

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           L   G DV  DD GE+ G  FA  +L+G P +V+VG + + + KVE + R  
Sbjct: 542 LLAAGVDVILDDRGERPGVMFADWELIGVPHRVVVGDRGLKEGKVEYQGRRD 593


>gi|145629552|ref|ZP_01785350.1| threonyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|145632888|ref|ZP_01788621.1| threonyl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|145639038|ref|ZP_01794646.1| threonyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|145641382|ref|ZP_01796961.1| threonyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|144978395|gb|EDJ88159.1| threonyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|144986544|gb|EDJ93110.1| threonyl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|145272010|gb|EDK11919.1| threonyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|145273925|gb|EDK13792.1| threonyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
 gi|309750996|gb|ADO80980.1| Threonyl-tRNA synthetase [Haemophilus influenzae R2866]
          Length = 643

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 144/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 QYDYQEVKGPFMMDRVLWEKTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P     S E                   D            
Sbjct: 405 YDIYSTFGFTNIAVKLSTRPENRIGSDE-----------------MWDRAEAGLAAALAH 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                AT
Sbjct: 448 NGLEYEIQEGEGAFYGPKIEF---ALRDCLGREWQCGTVQLDFALPGRLD--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE      ++  + 
Sbjct: 611 RKGADLGTFTVEEFAEILKNQVRSR 635


>gi|296876104|ref|ZP_06900158.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
 gi|296432815|gb|EFH18608.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
          Length = 647

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 158/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEI 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     + PE  +  + K+    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVAPEQIEEEFKKILQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          DD
Sbjct: 407 IDVYEDFNLTDYRFRLS-----YRDPEDKHKYFDNDEM--------WENAQRMLKAAVDD 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++ L     
Sbjct: 454 MGVEYYEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFDLH---- 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKQLRDRGVRADVDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDKAVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                E MS++  +       +N 
Sbjct: 619 GQKETETMSVDAFVELILTDIANK 642


>gi|228958638|ref|ZP_04120356.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228801059|gb|EEM47958.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 640

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 155/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TP+  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPKQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             + +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I  +L++ G  V  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYANEIALKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E  +L+  +       +N +
Sbjct: 616 EEKSEVTALDIFVATIEEEITNRK 639


>gi|126667243|ref|ZP_01738216.1| prolyl-tRNA synthetase [Marinobacter sp. ELB17]
 gi|126628188|gb|EAZ98812.1| prolyl-tRNA synthetase [Marinobacter sp. ELB17]
          Length = 576

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 120/237 (50%), Positives = 161/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +   +E P DAEI SH+LMLR G+I + + G+Y+WLP+G + L  V  I+REE
Sbjct: 1   MRASRYLIATQKETPADAEIISHQLMLRAGLIRKLAAGLYTWLPMGLRTLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +P +Q A+LW ESGR+D YG E+LR+ DR+ +   +GPTHEEV+TD+ R+
Sbjct: 61  MDRSGAQELLMPAVQPAELWRESGRWDEYGGELLRMNDRHGREFCFGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  F+QIQ KFRDE RPRFGVMR+REF+MKDAYSF +  E    +Y  M  +
Sbjct: 121 ELKSYKQLPANFFQIQTKFRDERRPRFGVMRAREFIMKDAYSFHINAESLDETYQLMHRT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGL   P++A+SG IGG  S EF VLA +GE  +       D+    E  
Sbjct: 181 YCAIFDRLGLDYRPVQADSGAIGGSGSQEFHVLASSGEDAIVF-STGSDYAANIEKA 236



 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 69/189 (36%), Positives = 105/189 (55%), Gaps = 3/189 (1%)

Query: 255 PYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D+    +      RGIEVGHIF  G KYS  ++AT    +GK   +
Sbjct: 384 PLGRVEDLRNVVEGDASPCGQGTLEIRRGIEVGHIFKLGNKYSKALNATVLDENGKTATI 443

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIWPD++APF+++++ +         +A EK+Y +
Sbjct: 444 YMGCYGIGVSRIVAASIEQNHDDRGIIWPDAIAPFRVAVVLLNGHKSPTVAEAGEKLYQQ 503

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G DV  DD  E+ G +FA  +L G P + +V  + +    +E K R    ++D++L
Sbjct: 504 LQEAGYDVLLDDRNERPGVKFADMELTGIPHRFVVSDRGLEAGTLEYKGRRDADKQDVAL 563

Query: 432 EEVINYASH 440
            + IN+   
Sbjct: 564 ADAINFLKS 572


>gi|257087763|ref|ZP_05582124.1| threonyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|256995793|gb|EEU83095.1| threonyl-tRNA synthetase [Enterococcus faecalis D6]
          Length = 645

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 231 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 289 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 349 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 409 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 455 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 504 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 560

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 561 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 620

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 621 SKETSVEDLSIFIDSMAAEVRNY 643


>gi|229161333|ref|ZP_04289318.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
 gi|228622147|gb|EEK78988.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
          Length = 639

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 154/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +R  Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLRGIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + +LW +SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQELWEKSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALANVLHSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W   V    I + N+     V  
Sbjct: 501 DEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVAPVQVKVIPVSNV-----VHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++  +L++ G  V  D   E++G +   A +   P  +++G K +    V ++   
Sbjct: 556 QYANEVVDKLAQAGIRVEQDMRDEKLGYKIREAQMQKVPYVLVIGDKEMESKAVNVRKYS 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E + L+  +        N +
Sbjct: 616 EEQSEVIELDGFMESVKEEIKNKK 639


>gi|78357681|ref|YP_389130.1| threonyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123741221|sp|Q30Y11|SYT_DESDG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78220086|gb|ABB39435.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 644

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 150/439 (34%), Gaps = 40/439 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              Y   I +   RD      +L L +    +   G+  W P G      +    R+E  
Sbjct: 227 LKSYLNRIEEAKKRDHRKLGTQLDLFS-FQEEGGSGMVYWHPKGALVRAILEDFERKEHL 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +   +LW +SG YD+Y + M    D +++     P +      I++S  
Sbjct: 286 KRGYQIVQTPQILRRELWEKSGHYDNYRENM-YFTDIDEQPYGVKPMNCVAHMLIYKSRS 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP   +++ +  R E      G++R R+F   DA+      +             
Sbjct: 345 HSYRDLPVRLFELGVVHRHEKSGVLHGLLRVRQFTQDDAHIICTPDQLESEIV-----GV 399

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L                   + G    E+ +   T   +   S +  D    +     + 
Sbjct: 400 LNFVRD--------------VMGVFGFEYSMEVSTRPEKSIGSDEDWDRATSALVKALEG 445

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    DV   KL D L    + +    +    F    ++       
Sbjct: 446 QGLPYEINEGDGAFYGPKIDV---KLRDCLGREWQCATVQCD----FTLPDRFD----LV 494

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H    +    +G++     V+     G    W   V    +++         
Sbjct: 495 YIGQDGERHRPVMVHRVILGSVERFIGVLTEHFAGAFPTWLAPVQARLLTVT------DA 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  E+  A L   G  V  D   E++G +   A L   P  +++G K V    V ++ 
Sbjct: 549 QNEFAEEARAALMAQGIRVEVDTRNEKLGYKVREAQLEKIPYILVIGDKEVEARGVNVRL 608

Query: 421 RLTGIREDMSLEEVINYAS 439
           R        +L+EV++   
Sbjct: 609 RKGDNLGLKTLDEVVDIIR 627


>gi|322372498|ref|ZP_08047034.1| threonine--tRNA ligase [Streptococcus sp. C150]
 gi|321277540|gb|EFX54609.1| threonine--tRNA ligase [Streptococcus sp. C150]
          Length = 648

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 161/447 (36%), Gaps = 34/447 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KTYLKRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     + PE  +  + K+    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVAPEQIEDEFKKILQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R             +   AD    + F + +  +          DD
Sbjct: 407 IDVYEDFNLTDYRFRLS-----------YRDPADK--HKYFDNDEMWENAQRMLKAAVDD 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++ L     
Sbjct: 454 MGVEYYEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFDLH---- 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   K+  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWKVAKKLRDRGVRAEVDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRF-SNNRP 447
                   ++ E +          +RP
Sbjct: 619 GQKQTHTETVSEFVENILADIARKSRP 645


>gi|85059397|ref|YP_455099.1| threonyl-tRNA synthetase [Sodalis glossinidius str. 'morsitans']
 gi|123738953|sp|Q2NT31|SYT_SODGM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84779917|dbj|BAE74694.1| threonyl-tRNA synthase [Sodalis glossinidius str. 'morsitans']
          Length = 642

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 152/445 (34%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   + +   RD      +L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LNTYLQHLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTLFRELETFVRMKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW ++G +D+Y + M       ++     P +      IF   +
Sbjct: 287 AYQYQEVKGPFMMDRVLWEKTGHWDNYAEHMFT-TSSENREYCIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +      N      
Sbjct: 346 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEDQVRDE-VNNCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G + I ++  + P     S++    A+                         +
Sbjct: 405 YDMYGTFGFEKILVKLSTRPEKRIGSNDVWGRAEQ-----------------DLAAALTE 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y    +     L D L    +     ++    F    +    ++A+
Sbjct: 448 NGIAFEYQPGEGAFYGPKIEF---TLLDCLDRAWQCGTVQLD----FSLPGR----LNAS 496

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G + +    V +    +G+M     ++    +     +P  + P ++ ++NI  +   
Sbjct: 497 YVGENNERVVPVMIHRAILGSMERFIGILT---EEYAGFYPTWLVPTQVVVMNITDN--- 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   K+  +LS  G  V  D   E+IG +     L   P  ++ G K V   KV ++ 
Sbjct: 551 QSEYVAKLTEKLSAAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEACKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       + + E+I    H   + 
Sbjct: 611 RRGKDLGSIDVNEIITKLQHEIRSR 635


>gi|16273277|ref|NP_439518.1| threonyl-tRNA synthetase [Haemophilus influenzae Rd KW20]
 gi|260580800|ref|ZP_05848626.1| threonyl-tRNA synthetase [Haemophilus influenzae RdAW]
 gi|1174548|sp|P43014|SYT_HAEIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|1574199|gb|AAC23014.1| threonyl-tRNA synthetase (thrS) [Haemophilus influenzae Rd KW20]
 gi|260092617|gb|EEW76554.1| threonyl-tRNA synthetase [Haemophilus influenzae RdAW]
          Length = 643

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 144/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 QYDYQEVKGPFMMDRVLWEKTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P     S E                   D            
Sbjct: 405 YDIYSTFGFTNIAVKLSTRPENRIGSDE-----------------MWDRAEAGLAAALAH 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                AT
Sbjct: 448 NGLEYEIQEGEGAFYGPKIEF---ALRDCLGREWQCGTVQLDFALPGRLD--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE      ++  + 
Sbjct: 611 RKGADLGTFTVEEFAEILKNQVRSR 635


>gi|300870146|ref|YP_003785017.1| threonyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
 gi|300687845|gb|ADK30516.1| threonyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
          Length = 643

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/442 (20%), Positives = 169/442 (38%), Gaps = 39/442 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      +L L +   H    G   W P G      V + IR E ++ G
Sbjct: 229 YLKKLKEAKERDHRKLGKELNLFS--FHDEGPGFPFWHPNGMIIYKAVESYIRNENDKRG 286

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P + + +LW  SG +D+Y + M    + +D      P +      ++ S+I SY
Sbjct: 287 YVEIKTPAILNEELWHRSGHWDNYKENM-YFTEIDDTKYAVKPMNCPGGLIVYNSNIHSY 345

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++    R EL     G+ R R F   DA+ F    +            YL +
Sbjct: 346 RDLPLRVAELGFVHRHELSGALHGLFRVRAFTQDDAHIFCTEEQLGDE-IINTIEYYLSV 404

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K   +   + P     S E                   +    S     D +  
Sbjct: 405 YKDFGFKDFEIFVSTRPAKSIGSDE-----------------IWELATKSLMNALDKLGI 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D     + D L  N +     ++    F    ++      +++G
Sbjct: 448 SYKVNEGDGAFYGPKIDF---NIKDVLDRNWQCGTLQVD----FSLPMRF----EISYEG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGK H    +    +G+M     ++   ++GK  +W   +    ++++    +++   +
Sbjct: 497 KDGKKHTPVMLHRAILGSMERFIGILVEHYNGKFPLWLSPIQVAVVNVL----NEEAQIN 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L + G  V  D+  + +G++     L   P  VI+G++ VS+ K+ I+ R +
Sbjct: 553 RVHEVAKKLKEAGFRVEIDESNDNLGTKIKKYRLQRTPYTVIIGAEEVSNGKLSIRTRSS 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              +DM L E +          
Sbjct: 613 QEIKDMDLTEFMEKLQKESKER 634


>gi|269119235|ref|YP_003307412.1| threonyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
 gi|268613113|gb|ACZ07481.1| threonyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
          Length = 634

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/439 (17%), Positives = 161/439 (36%), Gaps = 42/439 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y + + +   RD      +L L    + +H  G   ++P G + ++ +  I R E  + G
Sbjct: 230 YLIMMEEAEKRDHRKLGKQLNLF--FLDEHGPGFPFFMPKGMEVINKLQEIWRREHKKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +   +LW  SG + +Y + M   ++ ++K     P +       +++++ SY
Sbjct: 288 YKEIKTPVMLDKELWEISGHWFNYRENMYT-SEIDEKEYAIKPMNCPGAILAYKNNLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +N P  + ++ L  R E      G+MR R F   DA+ F  T +  +    ++   Y R 
Sbjct: 347 KNFPLKYGEMGLVHRHEFSGALHGLMRVRAFTQDDAHVFC-TEDQIEDQIMEIINLYDRF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G                   E+ +   T   +   S +  D            +  
Sbjct: 406 YKLFG------------------FEYNIELSTKPDKAIGSDEIWDIAERDLTNALVKMGI 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    D    K+ DS+    +     ++    F    ++      ++ G
Sbjct: 448 DYKLNPGDGAFYGPKIDF---KMKDSIGRIWQCGTIQLD----FNLPLRF----HMSYIG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++   + G   IW           ++I        +
Sbjct: 497 PDGEKHQPVMIHRAMYGSIERFMGILIEHYAGAFPIW------LAPVQVSILTISGEQAE 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++ +L  +G     D   E+IG +   A+     P+Q+I+G   V++++V I+   
Sbjct: 551 YASDLFKKLQNIGIRTELDIRDEKIGYKIREANAEQKIPIQLIIGKNEVANNEVNIRRFG 610

Query: 423 TGIREDMSLEEVINYASHR 441
           +     M  E+ +      
Sbjct: 611 SQESNTMKAEDFLKLIEEE 629


>gi|228472826|ref|ZP_04057584.1| threonine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275877|gb|EEK14643.1| threonine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
          Length = 649

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/451 (18%), Positives = 161/451 (35%), Gaps = 39/451 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L T   ++  +G+  WLP G    + + A +R+ Q 
Sbjct: 227 LTEYLTLLEEAKKRDHRKLGKELELFT-FSNKVGQGLPLWLPKGAALRERLEAFLRKAQK 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G  ++  P +   +L+V SG ++ YGK+  +        +  +  P +     +I+ S
Sbjct: 286 QAGYEQVVTPHIGHKNLYVTSGHWEKYGKDSFQPIATPNEGEEYLLKPMNCPHHCEIYNS 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           H  SY++LP  F +    +R E      G+ R R F   DA+ F  TPE     +  +  
Sbjct: 346 HPWSYKDLPKRFAEFGTVYRYEQSGELHGLTRVRCFTQDDAHIFC-TPEQLDAEFKHVID 404

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG  +   +                  D      +   D       +   + 
Sbjct: 405 LVLYVFGSLGFDNFTAQVSLR--------------DPENLSKYIGTDENWAKAENAIINA 450

Query: 240 DDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
               +L  ++E    A Y    D     + D+L  + ++    ++               
Sbjct: 451 AKEKNLTYVIETGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERF 499

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +KGAD + H    +     G+M    A++     G   +W        + +      
Sbjct: 500 DLWYKGADNELHRPVMIHRAPFGSMERFVAILLEHTAGNLPLWLVPEQVNILCI------ 553

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +       K+   L +       D+  E IG +   A+   FP  VIVG +   ++ + 
Sbjct: 554 SEKYEGYAHKVANLLQEADLRPHVDNRNETIGKKIREAETQKFPYMVIVGEEEEKNATLS 613

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN-RP 447
           ++         M + + I       + N RP
Sbjct: 614 VRRHGGEDLGSMKIADFITLIQEEINKNVRP 644


>gi|320353536|ref|YP_004194875.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Desulfobulbus
           propionicus DSM 2032]
 gi|320122038|gb|ADW17584.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Desulfobulbus
           propionicus DSM 2032]
          Length = 641

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 142/439 (32%), Gaps = 38/439 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +Y   + +   RD      +L L T  I  Q   G+  W P G      +    ++E  R
Sbjct: 233 QYLARLEEARKRDHRKLGKQLGLFT--IQDQIGPGLILWQPRGALLRRLIEDYWKDEHYR 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +   DLW  SG  D YG+ M    + ++      P +      ++ +   
Sbjct: 291 NGYQLLYTPHIARQDLWKTSGHLDFYGENMYSAMEIDEVMYQLKPMNCPFHIGVYNADKH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR  P  + ++   +R E      G+MR R F   DA+ F   P+  +     +    L
Sbjct: 351 SYREFPIRWCELGTVYRYERTGALHGLMRVRGFTQDDAHIFCR-PDQLEEEIFNIIDLNL 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I    G     +   + P                  +   S +       +     +  
Sbjct: 410 HILKTFGFDQYDVYLSTRP-----------------EKYVGSDEHWQLSTQALKQALEKK 452

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +       Y    D+   K+ D L  + + S   ++    F    ++ +    T 
Sbjct: 453 GLAYQLDPGEGVFYGPKIDI---KIKDQLGRSWQCSTIQVD----FNLPERFQMNY--TG 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                    +   +      R +  +IE       +      A                 
Sbjct: 504 VDGAEHQPIMIHRALMGSLERFIGVLIEHYAGAFPLWLAPEQARIMNIT-------DDQG 556

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           + CE+++ARL  +G  +  D   E++  +   A L+  P  +IVG +   +  V ++ R 
Sbjct: 557 EYCEQVHARLRAMGVRIDKDVRNEKLNYKIREAQLMKVPYMLIVGEREKQEGTVTVRKRD 616

Query: 423 TGIREDMSLEEVINYASHR 441
                 M+ E  ++     
Sbjct: 617 GENLPAMTPEAFVDLVIEE 635


>gi|194397191|ref|YP_002038247.1| threonyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|238690846|sp|B5E6Q8|SYT_STRP4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194356858|gb|ACF55306.1| threonyl-tRNA synthetase (thrS) [Streptococcus pneumoniae G54]
          Length = 647

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 156/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTDYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QIKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG+DH   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S++  +       +N 
Sbjct: 619 GQKETQTVSVDNFVQAILADIANK 642


>gi|152978995|ref|YP_001344624.1| threonyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
 gi|171704313|sp|A6VNZ2|SYT_ACTSZ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150840718|gb|ABR74689.1| threonyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
          Length = 643

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTVFRELETFVRTKLKEYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G + +Y  +++      ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWQNY-GDLMFTTQSENREYAIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      + + + Y   
Sbjct: 349 RDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEDQIESEVTSCIRMVYDIY 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G   I ++  + P     + E    A+ G                           
Sbjct: 409 GT-FGFTDIAVKLSTRPEKRIGADEMWDRAEQG-----------------LANALKHNAL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    +     L D L    +     ++               +A++  
Sbjct: 451 EYEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTIQLDFALPGRL--------NASYVA 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G++     +I   + G    W   V    +++           +
Sbjct: 500 EDNDRRTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPVQAVVMNIT------DSQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV ++ R  
Sbjct: 554 YVQKVVKQLSDAGLRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                  +E+ I     +    
Sbjct: 614 TDLGTYDVEDFIEILKQQVRGR 635


>gi|228908133|ref|ZP_04071981.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|228851551|gb|EEM96357.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
          Length = 640

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 153/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +R  Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLRGIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TP+  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPKQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             +        +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DENNDKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             C ++  +L++ G  V  D   E++G +   A +   P  +++G K +    V ++   
Sbjct: 556 QYCSEVAHKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYVLVIGDKEMESGAVNVRKYA 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E + ++  +        N +
Sbjct: 616 EEKSEVVEIDVFVATIEEEIKNRK 639


>gi|225855059|ref|YP_002736571.1| threonyl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|237649181|ref|ZP_04523433.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974]
 gi|237822258|ref|ZP_04598103.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974M2]
 gi|254783541|sp|C1CFK0|SYT_STRZJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225723844|gb|ACO19697.1| threonyl-tRNA synthetase [Streptococcus pneumoniae JJA]
          Length = 647

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 156/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTDYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QIKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG+DH   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S++  +       +N 
Sbjct: 619 GQKETQTVSVDNFVQAILADIANK 642


>gi|70733467|ref|YP_263242.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
 gi|68347766|gb|AAY95372.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
          Length = 629

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 136/436 (31%), Gaps = 39/436 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + Q   RD      +L L        + G   W   G      +   +R  Q + G
Sbjct: 231 YLLRLEQAQQRDHRKLGQQLDLF--HFDDCAPGSVFWHAKGWTLFQELIGYMRRRQEQAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E++ P +    LW  SG + +Y   M     ++ +     P +      IF    KSY
Sbjct: 289 YQEVNTPDVMDRGLWETSGHWQNYRDHMFTTTTQDQRTFALKPMNCPGAVAIFGHGRKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G++R R F   DA+ F  TP+  +            I
Sbjct: 349 RDLPLRIAEFGKVHRYEPSGALHGLLRVRHFTQDDAHIFC-TPQQMQSECAATIALVFDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++  + P     S E                   D    +       +  
Sbjct: 408 YKEFGFDQVAVKLSTRPDHRIGSDE-----------------VWDQLEEALVGALQSMHI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    +     L D++  + +     +++              + ++  
Sbjct: 451 DYRINPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVDLNLP--------ERFAISYID 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G+      +     G++     ++   H G   +W        +++       +   D
Sbjct: 500 ERGERCQPVMLHRALFGSLERFIGILLEHHGGALPLWLAPQQAVVLNI------SEAQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               I   L + G     D   E+IG +     L   P  ++VG K      V ++ R  
Sbjct: 554 YARAISDSLRRHGLRASADLRNEKIGYKIREHSLQKVPYLLVVGEKEKDGGYVSLRSRNG 613

Query: 424 GIREDMSLEEVINYAS 439
                +SLE+ +    
Sbjct: 614 EDLGRLSLEQALARMR 629


>gi|229815156|ref|ZP_04445493.1| hypothetical protein COLINT_02202 [Collinsella intestinalis DSM
           13280]
 gi|229809386|gb|EEP45151.1| hypothetical protein COLINT_02202 [Collinsella intestinalis DSM
           13280]
          Length = 595

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 88/439 (20%), Positives = 156/439 (35%), Gaps = 43/439 (9%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD      ++ L   M+   + G   +LP G    + +    RE  ++ G +E+
Sbjct: 196 LEEAKKRDHRRIGREMDLF--MMRDEAPGFPFFLPNGMVLKNTLLDYWREIHHKAGYVEI 253

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           S P + +  LW+ SG +D Y   M      +D+     P +      ++ S   SYR LP
Sbjct: 254 STPQIMNKSLWLTSGHWDHYKDNMYSTM-IDDEEYCIKPMNCPGGVLVYSSKPHSYRELP 312

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               +I L  R ELR    G+ R R F   DA+ F    + +      +      ++ + 
Sbjct: 313 IRAGEIGLVHRHELRGALHGLFRVRCFNQDDAHLFVTPEQLTDEIVGVVR-LIDSVYQKF 371

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G K   +   + P     S E    A+ G                      D +     +
Sbjct: 372 GFKY-HVELSTRPEDSMGSDEDWAAAEEG-----------------LKVALDKLGMDYVV 413

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    D H E   DSL    +     ++    F     +      T+  ADG+
Sbjct: 414 NEGDGAFYGPKIDFHLE---DSLGRTWQCGTVQLD----FQMPQNFD----LTYVDADGE 462

Query: 309 DHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 +     G++     ++   + GK  +W   +    + +       +  RD   +
Sbjct: 463 KKRPIMLHRVCFGSIERFIGILIEHYAGKFPVWLAPMQVKVLPV------SEKSRDYAHQ 516

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +  +L   G  V  DD  E+IG +   A  +   P  +I+G K V    + ++ R +   
Sbjct: 517 VTEQLEAAGIRVVCDDRDEKIGYKIREARGVDRVPYMLILGEKEVEAGNISVRDR-SNET 575

Query: 427 EDMSLEEVINYASHRFSNN 445
             M+++E I          
Sbjct: 576 VPMAVDEFIAKVVEETRTR 594


>gi|145631389|ref|ZP_01787160.1| threonyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|144983048|gb|EDJ90552.1| threonyl-tRNA synthetase [Haemophilus influenzae R3021]
          Length = 643

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 142/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 QYDYQEVKGPFMMDRVLWEKTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P     S E                   D            
Sbjct: 405 YDIYSTFGFTNIAVKLSTRPENRIGSDE-----------------MWDRAEAGLAAALAH 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                AT
Sbjct: 448 NGLEYEIQEGEGAFYGPKIEF---ALRDCLGREWQCGTVQLDFALPGRLD--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G    W        I++         
Sbjct: 497 YVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQAVVINIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +++   LS  G  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QSDYVQQVVKTLSDAGLRVKADLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE      ++  + 
Sbjct: 611 RKGADLGTFTVEEFAEILKNQVRSR 635


>gi|68250118|ref|YP_249230.1| threonyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
 gi|81335458|sp|Q4QK77|SYT_HAEI8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|68058317|gb|AAX88570.1| threonyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
          Length = 643

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 142/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 QYDYQEVKGPFMMDRVLWEKTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P     S E                   D            
Sbjct: 405 YDIYSTFGFTNIAVKLSTRPENRIGSDE-----------------MWDRAEAGLAAALAH 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                AT
Sbjct: 448 NGLEYEIQEGEGAFYGPKIEF---ALRDCLGREWQCGTVQLDFALPGRLD--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +++   LS  G  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QADYVQQVVKTLSDAGLRVKADLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE      ++  + 
Sbjct: 611 RKGADLGTFTVEEFAEILKNQVRSR 635


>gi|257464982|ref|ZP_05629353.1| threonyl-tRNA synthetase [Actinobacillus minor 202]
 gi|257450642|gb|EEV24685.1| threonyl-tRNA synthetase [Actinobacillus minor 202]
          Length = 643

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  +G + +Y  +++      ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWERTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T E  +            I
Sbjct: 349 RDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEEQIESEVTSCIKMVYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G ++I ++  + P                           D           +   
Sbjct: 408 YSTFGFENIAVKLSTRPENR-----------------IGDDAMWDRAEEGLANALRNNGL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    +     L D L    +     ++                A++  
Sbjct: 451 EYEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTVQLDFALPGRLD--------ASYVA 499

Query: 305 A-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +G+   V +    +G++     +I   + G    W   V    +++           +
Sbjct: 500 EDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPVQAVVMNIT------DSQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV ++ R  
Sbjct: 554 YVQKVVKQLSDAGLRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTRKG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                  +EE +     +    
Sbjct: 614 ADLGTYKVEEFVEILKSQVRGR 635


>gi|205374566|ref|ZP_03227362.1| threonyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 643

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 163/440 (37%), Gaps = 34/440 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++ + G 
Sbjct: 235 LRLLEEAKERDHRKIGKELDLFMN-SQKVGQGLPLWLPKGATVRRMIERYIVDKEEKLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S DL+  SG +D Y + M  + + +++ ++  P +      I+++ I SYR
Sbjct: 294 DHVYTPVLGSVDLYKTSGHWDHYQENMFPVMEMDNEELVLRPMNCPHHMMIYKNGIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F   P+  K  + ++    + ++
Sbjct: 354 ELPIRIAELGTMHRYEMSGALAGLQRVRGMTLNDAHIFVR-PDQIKEEFKRVVRLVMEVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDFDDIIS 244
               LK    R                  D  +T+ +       +          D++  
Sbjct: 413 KDFDLKDYSFRLS--------------YRDPEDTEKYFDDDQMWERAQSMLKEAMDELDV 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                +   A Y    DV   ++  +L + + +S   ++    F    ++      T+ G
Sbjct: 459 HYFEADGEAAFYGPKLDV---QVKTALGKEETLSTVQLD----FLLPERFD----LTYVG 507

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGK H   +     G +  +   +    +     +P  +AP ++ +I +     V  D 
Sbjct: 508 EDGKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSP--DVHFDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+   L   G     D   E+IG +   A +   P  ++VG   + +  V ++     
Sbjct: 564 AKKVQEELRSAGIRADLDSRDEKIGYKIREAQMQKIPYMLVVGDNEIEEEAVNVRKYGEQ 623

Query: 425 IREDMSLEEVINYASHRFSN 444
             E +   +         + 
Sbjct: 624 KSETLPFAQFFTALKKEVTK 643


>gi|238765296|ref|ZP_04626223.1| Threonyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
 gi|238696469|gb|EEP89259.1| Threonyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
          Length = 642

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    A+                         +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWTRAED-----------------DLAAALTENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    + S    A++ G
Sbjct: 451 PFDYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----ASYIG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G+M     ++   + G    W   V    +++           D
Sbjct: 500 ENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTWLAPVQVVVMNIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R  
Sbjct: 554 YVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + +  V++       + 
Sbjct: 614 KDLGSLDVNVVVDQLLAEIRSR 635


>gi|304406649|ref|ZP_07388304.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304344182|gb|EFM10021.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 645

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 162/444 (36%), Gaps = 39/444 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +L + T    +  +G+  WLP G +    +   I + + R G 
Sbjct: 235 LHFLEEAKKRDHRKLGRELKMFT-FSREVGQGLPLWLPNGARVRRTMERYIVDLEERLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + +L+  SG ++ Y ++M      +++ ++  P +      +++S ++SYR
Sbjct: 294 SHVYTPVLANVELYKISGHWEHYSEDMFPPMALDNEELVLRPMNCPHHMMVYKSDMRSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++    R E+     G+ R R   + DA+ F   P+  K  + ++     +++
Sbjct: 354 DLPIRVAELGTMHRYEMSGALTGLHRVRAMTLNDAHIFCR-PDQIKEEFARVINLIRQVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS-KDFMDFPIPSENTDFDDIIS 244
              G+K    R                  D  +T+ +    +  +          +++  
Sbjct: 413 ADFGIKEYRFRLS--------------YRDPQDTEKYFPDDNMWEMSQRMLREVVEELEL 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  +L + + +S   ++    F    ++       + G
Sbjct: 459 PFFEAEGEAAFYGPKLDV---QIKTALGKEETLSTAQLD----FLLPERF----ELEYVG 507

Query: 305 ADGKDHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            DGK H   +   GI     R+ A ++E+      +      A                 
Sbjct: 508 DDGKKHRPVVIHRGIISTMERMTAYLLENFAGALPLWLSPMHARVIPV-------SSAYD 560

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++  +L   G     D   E++G +   A L   P  +IVG        V ++ R 
Sbjct: 561 GYAREVEEKLLAAGVRAESDLRNEKLGYKIREAQLEKLPYMLIVGDNEAQAGTVSVRKRG 620

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
            G      + E+I   +   +  +
Sbjct: 621 EGDIGSKEVSELIALLTEEIATKK 644


>gi|221232374|ref|YP_002511527.1| threonyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|254783539|sp|B8ZM32|SYT_STRPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|220674835|emb|CAR69409.1| threonyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
          Length = 647

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 155/444 (34%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTDYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QIKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG+DH   M   G  +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEDHRPVMIHRGAISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S++  +       +N 
Sbjct: 619 GQKETQTVSVDNFVQAILADIANK 642


>gi|229115852|ref|ZP_04245250.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228667595|gb|EEL23039.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
          Length = 640

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 154/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMGQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DVKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++  +L++ G  +  D   E++G +   A +   P  +++G K + +  V ++   
Sbjct: 556 QYANEVADKLAQAGVRIERDVRDEKLGYKIREAQMQKIPYVLVIGDKEMENGSVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E ++L+           N +
Sbjct: 616 EEKSEVVALDVFAASMEEEIKNRK 639


>gi|120598808|ref|YP_963382.1| threonyl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|166225502|sp|A1RJI3|SYT_SHESW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120558901|gb|ABM24828.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Shewanella sp.
           W3-18-1]
          Length = 642

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 142/443 (32%), Gaps = 40/443 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +   + +   RD      +L L    + + + G+  W   G      +   IR + N
Sbjct: 229 LSTHLTRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELERFIRRKLN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW  SG +D Y + M       ++     P +      IF   +
Sbjct: 287 QYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFT-TSSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +  +   +      
Sbjct: 346 KSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFCTDDQVQEE-VSACIQMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G ++I ++  + P                           D    +       
Sbjct: 405 YDTYSTFGFENIVVKLSTRPEKR-----------------IGDDAMWDRAEEALKQALRA 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +++    A Y    +     L D L    +     ++       G        AT
Sbjct: 448 NNIEFTLLPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPNRLG--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     ++   + G+   W   +    +++         
Sbjct: 497 YVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGRFPTWLAPMQVVVMNIT------DK 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  ++I     + G    +D   E+IG +     L   P  ++VG + + + +V ++ 
Sbjct: 551 QADYVQEIVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R       M LE+       + S
Sbjct: 611 RDGIDLGKMRLEDFATKIHQQIS 633


>gi|294626197|ref|ZP_06704803.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599549|gb|EFF43680.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 634

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/438 (16%), Positives = 138/438 (31%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y + + + + RD         L    + + + G+  W P G      V   +R+    +G
Sbjct: 232 YIMRMEEADKRDHRRIGKAQDLF--HLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y   M    +   +     P +      +F   + SY
Sbjct: 290 YGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYAVKPMNCPGHVQVFNQGLHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F L     +          L +
Sbjct: 349 RDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCL-ESQIESEVTAFHQQALAV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P                           D    +  +       
Sbjct: 408 YTAFGFDDIQIKIALRPEKR-----------------LGDDATWDKAESALRSALGVCGV 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L D++    ++    ++       G        A +  
Sbjct: 451 EWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLG--------AEYVD 499

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   H G    W   V     ++           +
Sbjct: 500 ENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPSWLAPVQVVVANIT------DAQAE 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L+  G  V  D   E+IG +     +   P  ++VG +   +  V ++ R  
Sbjct: 554 YVDSVRKTLANQGFRVSADLRNEKIGYKIREHTMQRVPYLLVVGDREKENGAVAVRTRSG 613

Query: 424 GIREDMSLEEVINYASHR 441
                M++   I      
Sbjct: 614 EDLGTMTVSAFIERLQAE 631


>gi|228965357|ref|ZP_04126449.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228794347|gb|EEM41861.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 640

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 153/443 (34%), Gaps = 40/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TP+  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPKQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             +        +    +G++    A++     G    W        + +  +   + V  
Sbjct: 501 DENNDKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVVPVSNAVHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             C ++  +L+K G  V  D   E++G +   A +   P  +++G K +    V ++   
Sbjct: 556 QYCSEVAHKLAKAGVRVEQDARDEKLGYKIREAQMQKVPYFLVIGDKEMESGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
               E ++L+  +        N 
Sbjct: 616 EEKSEVVALDVFVARIEEEIKNR 638


>gi|148825906|ref|YP_001290659.1| threonyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|166223344|sp|A5UBX5|SYT_HAEIE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148716066|gb|ABQ98276.1| threonyl-tRNA synthetase [Haemophilus influenzae PittEE]
          Length = 643

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 142/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 QYDYQEVKGPFMMDRVLWEKTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P     S E                   D            
Sbjct: 405 YDIYSTFGFTNIAVKLSTRPENRIGSDE-----------------MWDRAEAGLAAALAH 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                AT
Sbjct: 448 NGLEYEIQEGEGAFYGPKIEF---ALRDCLGREWQCGTVQLDFALPGRLD--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +++   LS  G  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QSDYVQQVVKTLSDAGLRVKADLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE      ++  + 
Sbjct: 611 RKGADLGTFTVEEFAEILKNQVRSR 635


>gi|238749482|ref|ZP_04610987.1| Threonyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
 gi|238712137|gb|EEQ04350.1| Threonyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
          Length = 642

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    A+                         +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWTRAED-----------------DLAAALTENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    + S    A++ G
Sbjct: 451 PFDYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----ASYIG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G+M     ++   + G    W   V    +++           D
Sbjct: 500 ENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTWLAPVQVVVMNIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R  
Sbjct: 554 YVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + +  V++       + 
Sbjct: 614 KDLGSLDVNVVVDQLLAEIRSR 635


>gi|221320079|ref|ZP_03601373.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
          Length = 643

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/433 (20%), Positives = 160/433 (36%), Gaps = 34/433 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++   G 
Sbjct: 235 LRMLEEAKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKEISLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG +D Y + M    + +++ ++  P +      I++  I SYR
Sbjct: 294 EHVYTPVLGSKELYETSGHWDHYQEGMFPPMEMDNETLVLRPMNCPHHMMIYKQDIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F    +        +      ++
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKDEFIRTVR-LIQDVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
              GL     R                  D  +T+ +   D M     S      D+I  
Sbjct: 413 EDFGLSDYTFRLS--------------YRDPEDTEKYFDDDEMWNKAQSMLKEAMDEIGH 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G
Sbjct: 459 DYYEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIG 507

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGK H   +     G +  +   +    +      P  +AP +  +I +     V  D 
Sbjct: 508 EDGKQHRPVVIHR--GVVSTMERFVAFLIEEHKGALPTWLAPVQFQVIPVSP--AVHLDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+  RL   G  V  D   E+IG +   A +   P  ++VG +   +  V ++     
Sbjct: 564 AKKVQERLQCEGLRVEVDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKYGEQ 623

Query: 425 IREDMSLEEVINY 437
             E +SL+E +  
Sbjct: 624 NSETISLDEFVKK 636


>gi|33240514|ref|NP_875456.1| threonyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|73919816|sp|Q7VBM8|SYT_PROMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33238042|gb|AAQ00109.1| Threonyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 643

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 155/448 (34%), Gaps = 43/448 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      KL L      + + G+  W P G      + + IRE      
Sbjct: 231 YLLKIEEAEKRDHRKIGKKLDLF--HTQEEAPGMIFWHPKGWSIYQVLESFIRETLILND 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P      LW +SG +D + ++M       ++     P +      +F   +KSY
Sbjct: 289 YKEIKTPQTVDRSLWEKSGHWDKFKEDMFTTT-SENREYAIKPMNCPCHIQVFNEGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T    +   +K       +
Sbjct: 348 RDLPIRLAEFGSCHRNEPSGALHGLMRVRNFVQDDAHIFC-TEAQIQDEVSKFIDLVFDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +SI ++  + P     S E    ++         K F    +P E         
Sbjct: 407 YKAFGFESIIIKLSTRPTKRVGSDEIWDKSEKALADALNIKKFEWSYLPGE--------- 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D +    +     ++       G        A++  
Sbjct: 458 --------GAFYGPKIEF---SLKDCIDRVWQCGTIQVDFSMPHRLG--------ASYID 498

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G+      ++    +     +P  ++P ++ +I I   + +   
Sbjct: 499 ENSQKKVPVMLHRAILGSFERFIGILI---EEYEGKFPPWLSPIQVIVIGITDRNSI--- 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C++I   L   G    +D   E++G +     L   P  +I+G K   +  V ++    
Sbjct: 553 KCKEISNLLMLRGYRATYDTRNEKVGLKIREHTLQRIPYLLIIGDKEQEEGTVSVRTMHG 612

Query: 424 GIREDMSLEEVINYASHRFS---NNRPV 448
                M L E     +   S   N +PV
Sbjct: 613 IDMGSMKLTEFQEIINEAISLKGNYKPV 640


>gi|16079947|ref|NP_390773.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310836|ref|ZP_03592683.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315161|ref|ZP_03596966.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221324361|ref|ZP_03605655.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|135175|sp|P18255|SYT1_BACSU RecName: Full=Threonyl-tRNA synthetase 1; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|143766|gb|AAA22864.1| (thrSv) (EC 6.1.1.3) [Bacillus subtilis]
 gi|1769999|emb|CAA99608.1| threonyl-tRNA-synthetase [Bacillus subtilis]
 gi|2293284|gb|AAC00362.1| threonine tRNA synthetase [Bacillus subtilis]
 gi|2635360|emb|CAB14855.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 643

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/433 (20%), Positives = 160/433 (36%), Gaps = 34/433 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++   G 
Sbjct: 235 LRMLEEAKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKEISLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG +D Y + M    + +++ ++  P +      I++  I SYR
Sbjct: 294 EHVYTPVLGSKELYETSGHWDHYQEGMFPPMEMDNETLVLRPMNCPHHMMIYKQDIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F    +        +      ++
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKDEFIRTVR-LIQDVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
              GL     R                  D  +T+ +   D M     S      D+I  
Sbjct: 413 EDFGLSDYTFRLS--------------YRDPEDTEKYFDDDEMWNKAQSMLKEAMDEIGH 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G
Sbjct: 459 DYYEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYIG 507

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGK H   +     G +  +   +    +      P  +AP +  +I +     V  D 
Sbjct: 508 EDGKQHRPVVIHR--GVVSTMERFVAFLIEEHKGALPTWLAPVQFQVIPVSP--AVHLDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+  RL   G  V  D   E+IG +   A +   P  ++VG +   +  V ++     
Sbjct: 564 AKKVQERLQCEGLRVEVDSRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKYGEQ 623

Query: 425 IREDMSLEEVINY 437
             E +SL+E +  
Sbjct: 624 NSETISLDEFVKK 636


>gi|146293114|ref|YP_001183538.1| threonyl-tRNA synthetase [Shewanella putrefaciens CN-32]
 gi|166225500|sp|A4Y706|SYT_SHEPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145564804|gb|ABP75739.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Shewanella
           putrefaciens CN-32]
          Length = 642

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 142/443 (32%), Gaps = 40/443 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +   + +   RD      +L L    + + + G+  W   G      +   IR + N
Sbjct: 229 LSTHLTRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELERFIRRKLN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW  SG +D Y + M       ++     P +      IF   +
Sbjct: 287 QYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFT-TSSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F    +  +   +      
Sbjct: 346 KSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFCTDDQVQEE-VSACIQMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G ++I ++  + P                           D    +       
Sbjct: 405 YDTYSTFGFENIVVKLSTRPEKR-----------------IGDDAMWDRAEEALKQALRA 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +++    A Y    +     L D L    +     ++       G        AT
Sbjct: 448 NNIEFTLLPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPSRLG--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     ++   + G+   W   +    +++         
Sbjct: 497 YVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGRFPTWLAPMQVVVMNIT------DK 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  ++I     + G    +D   E+IG +     L   P  ++VG + + + +V ++ 
Sbjct: 551 QADYVQEIVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R       M LE+       + S
Sbjct: 611 RDGIDLGKMRLEDFATKIHQQIS 633


>gi|219871154|ref|YP_002475529.1| threonyl-tRNA synthetase [Haemophilus parasuis SH0165]
 gi|254783524|sp|B8F5H9|SYT_HAEPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219691358|gb|ACL32581.1| threonyl-tRNA synthetase [Haemophilus parasuis SH0165]
          Length = 643

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 143/441 (32%), Gaps = 38/441 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +  +  
Sbjct: 232 YLHRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKQYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G + +Y  +++      ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWQNY-GDLMFTTQSENREYAIKPMNCPGHIQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F +  +               I
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCMPEQVESE-VTSCIKMVYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G ++I ++  + P     + E    A+                             
Sbjct: 408 YSTFGFENIQVKLSTRPANSIGTDEMWNKAEA-----------------DLAAALTANGL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    +     L D L    +     ++    F+   + S    A    
Sbjct: 451 AFEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTIQLD----FFLPERLSASYVAEDND 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                  V +    +G++     +I   + G    W   V    +++           + 
Sbjct: 504 RK---TPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPVQAVVMNIT------DSQAEY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV ++ R   
Sbjct: 555 VQQVVKQLSDAGLRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTRKGA 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
                 +EE +     +    
Sbjct: 615 DLGTYKVEEFVEMLKKQVRGR 635


>gi|123442189|ref|YP_001006170.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166225517|sp|A1JMJ9|SYT_YERE8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122089150|emb|CAL11992.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 642

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    A+                         +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWTRAED-----------------DLAAALTENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    + S    A++ G
Sbjct: 451 PFDYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----ASYIG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G+M     ++   + G    W   V    +++           D
Sbjct: 500 ENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTWLAPVQVVVMNIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R  
Sbjct: 554 YVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + +  V++       + 
Sbjct: 614 KDLGSLDVNVVVDQLLAEIRSR 635


>gi|322517198|ref|ZP_08070081.1| threonine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
 gi|322124257|gb|EFX95773.1| threonine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
          Length = 648

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 160/447 (35%), Gaps = 34/447 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLKRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     + PE  +  + K+    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVAPEQIEDEFKKILQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R             +   AD    + F + +  +          DD
Sbjct: 407 IDVYEDFNLTDYRFRLS-----------YRDPADK--HKYFDNDEMWENAQRMLKAAVDD 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++ L     
Sbjct: 454 MGVEYYEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFDLH---- 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKELRDRGVRAEVDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRF-SNNRP 447
                   ++ E +          +RP
Sbjct: 619 GQKQTHTETVSEFVENILADIARKSRP 645


>gi|313885013|ref|ZP_07818765.1| threonine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619704|gb|EFR31141.1| threonine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 651

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 158/444 (35%), Gaps = 36/444 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD      +L L   MI  +   G+  WLP G      +   I +++   G  
Sbjct: 234 RREEAKERDHRKLGKELGLF--MISQEAGSGLPFWLPKGATIRRVIERYIMDKEIALGYE 291

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P +   DL+  SG +  Y  +M    D  D  M +  P +      I+++ I SYR
Sbjct: 292 HVYTPVMAKTDLYKTSGHWAHYKDDMFPPMDMGDGEMLVLRPMNCPHHMLIYKNEIHSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++ +  R E      G+ R RE  + D++ F    +     + ++      ++
Sbjct: 352 ELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDSHIFVRPDQIKDE-FKRVLNLIADVY 410

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIIS 244
               +     R                  D  + + +       +          D++  
Sbjct: 411 EDFNITDYRFRLS--------------YRDPEDKEKYFDDYAMWEKAESMLKEAMDELGL 456

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    DV   +   ++   + +S   ++    F    ++      T+ G
Sbjct: 457 EYFEAIGEAAFYGPKLDV---QFKTAIGLEETMSTIQLD----FLLPERFD----LTYVG 505

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG++ +  +  +  G +  +   +    +     +P  +AP +  L+ +    +   D 
Sbjct: 506 EDGQNTHRPVVIHR-GVVSTMERFVAYLIEEYKGAFPTWLAPVQAILLPVSP--EHHGDR 562

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E+IY  L + G  V  D   E++G +   A     P Q+++G + V D  V I+     
Sbjct: 563 VEEIYHALQEAGFRVEMDLRNEKLGYKIREAQTSKIPYQIVIGDQEVEDGTVNIRRYGAQ 622

Query: 425 IREDMSLEEVINYASHRF-SNNRP 447
               +SLE+ I   +      +RP
Sbjct: 623 DSNSVSLEDFIALLNEDVARKSRP 646


>gi|85859447|ref|YP_461649.1| prolyl-tRNA synthetase [Syntrophus aciditrophicus SB]
 gi|85722538|gb|ABC77481.1| prolyl-tRNA synthetase [Syntrophus aciditrophicus SB]
          Length = 597

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 134/251 (53%), Positives = 169/251 (67%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP  +E P DAE+ SH+LMLR GMI + S GIYS+LPLG + L  V  IIREE
Sbjct: 20  MRYSEMFLPTEREIPSDAEVVSHQLMLRAGMIRKLSAGIYSYLPLGYRVLRKVEQIIREE 79

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q A+LW ESGR++ YGKE+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 80  MNRAGAQEVYLPMVQPAELWQESGRWEHYGKELLRFRDRHDREYCLGPTHEEVITDLVRH 139

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IK+YR LP   YQIQ KFRDE+RPRFGVMR REF MKDAYSFD   EG++ SY KMF +
Sbjct: 140 EIKTYRQLPKNLYQIQTKFRDEIRPRFGVMRGREFGMKDAYSFDADEEGAEISYQKMFEA 199

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL+  P+ A+SG IGG  SHEF+V+AD+GE  +        +    E  +  
Sbjct: 200 YKRIFARCGLRFRPVEADSGTIGGSFSHEFMVMADSGEDGLVFCATCS-YAANLEKAEVH 258

Query: 241 DIISLNSIVEQ 251
               +    ++
Sbjct: 259 PPEKMEISNDE 269



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/202 (35%), Positives = 114/202 (56%), Gaps = 2/202 (0%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSAT 301
            L ++ E      +A +D+   +  DS P  +     ARGIEVGH+F  GTKYS  M A+
Sbjct: 386 HLRNVNEGRDFQISAFADLKVARETDSCPRCQGALKFARGIEVGHVFKLGTKYSKAMGAS 445

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +   +GK+  + MG YGIG  R VAA IE +HD  GI+WP  ++P+++ +  +  +D+  
Sbjct: 446 YLDKNGKEQIMIMGCYGIGTGRTVAACIEQNHDENGIVWPMPISPYQVIITPVNMNDKAL 505

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E++Y  L+  G +V  DD  E+ G +F  ADL+G P++V VG K +++ KVE++ R
Sbjct: 506 AETAERLYESLAGKGAEVLLDDRDERAGVKFKDADLIGIPIRVTVGPKKLAEGKVEVRLR 565

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            TG   D+ ++ V         
Sbjct: 566 DTGETSDVQVDSVEKMILRVIE 587


>gi|218897336|ref|YP_002445747.1| threonyl-tRNA synthetase [Bacillus cereus G9842]
 gi|218542902|gb|ACK95296.1| threonyl-tRNA synthetase [Bacillus cereus G9842]
          Length = 640

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 153/443 (34%), Gaps = 40/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TP+  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPKQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             +        +    +G++    A++     G    W        + +  +   + V  
Sbjct: 501 DENNDKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVVPVSNAVHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             C ++  +L+K G  V  D   E++G +   A +   P  +++G K +    V ++   
Sbjct: 556 QYCSEVAHKLAKAGVRVEQDARDEKLGYKIREAQMQKVPYFLVIGDKEMESGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
               E ++L+  +        N 
Sbjct: 616 EEKSEVVALDVFVARIEEEIKNR 638


>gi|310658431|ref|YP_003936152.1| threonyl-tRNA synthetase [Clostridium sticklandii DSM 519]
 gi|308825209|emb|CBH21247.1| threonyl-tRNA synthetase [Clostridium sticklandii]
          Length = 637

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 158/443 (35%), Gaps = 42/443 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++ +++E   RD      +L L T +      G   +LP G    + +    RE     G
Sbjct: 231 YIQMMEEAKLRDHRKLGKELELFTLL--DEGPGFPFFLPKGTVLKNKLLEYWREVHREDG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P + +  LW  SG + +Y + M  + + +++     P +      ++++ ++SY
Sbjct: 289 YVEIETPIILNRQLWETSGHWFNYKENMYTV-EIDEEDFAIKPMNCPGGMLVYQTKMRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++ P    +I    R EL     G+MR R F   DA+ F L  +        +     +I
Sbjct: 348 KDFPIRMGEIGRVHRHELSGALHGLMRVRAFTQDDAHIFMLPEQIKDE-IKGVVSLIDKI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G                      +   T   +        D    +     +++  
Sbjct: 407 YKTFGFSY------------------HLELSTRPEKFLGEISMWDEAESNLKAALEELGL 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H           +    R  + G I     +       ++ G
Sbjct: 449 PYIINEGDGAFYGPKIDFHL----------RDCIGRTWQCGTI-QLDYQLPERFELSYIG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++    +     +P  +AP ++ ++ I        D
Sbjct: 498 KDGEKHRPVMIHRVAFGSIERFIGILI---EHYAGKFPLWIAPVQVKILPISDK---FMD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++I   +      V  DD  E+IG +   A L   P  +IVG K +++  + ++ R  
Sbjct: 552 YAKQIEKAMYDAKIRVELDDRAEKIGYKIREAQLEKVPYMIIVGEKELNEGNISVRSRDL 611

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
           G     + ++ +   +    + +
Sbjct: 612 GDLGFKNTDDFLKELNEEIISRK 634


>gi|322392280|ref|ZP_08065741.1| threonine--tRNA ligase [Streptococcus peroris ATCC 700780]
 gi|321144815|gb|EFX40215.1| threonine--tRNA ligase [Streptococcus peroris ATCC 700780]
          Length = 647

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 161/442 (36%), Gaps = 33/442 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++   
Sbjct: 231 YLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRILERYIVDKEVAA 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIK 123
           G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H+ 
Sbjct: 289 GYQHVYTPPIASVELYKTSGHWDHYREDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHHVH 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    +I +  R E       ++    +  +     + PE  +  + K+    + 
Sbjct: 349 SYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVAPEQIEDEFKKILQLIID 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    L     R             +   AD    + F + +  +          DD+ 
Sbjct: 409 VYEDFNLTDYRFRLS-----------YRDPADK--HKYFDNDEMWENAQRMLKAAVDDMG 455

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    D+   ++  +L + + +S   ++    F    ++ L     + 
Sbjct: 456 VEYYEAEGEAAFYGPKLDI---QMKTALGKEETLSTIQLD----FLLPERFDLH----YI 504

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           GADG++H   M   G+ +       I   +         +          I   ++   D
Sbjct: 505 GADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQV----TVIPVSNEKHVD 560

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D+  E++  +   +     P Q+IVG K + ++ V ++    
Sbjct: 561 YAWEVAKKLRDRGVRVDVDERNEKMQFKIRASQTQKIPYQLIVGDKEMDENAVNVRRYGQ 620

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              E M ++  +       +N 
Sbjct: 621 KETETMPVDAFVELILADIANK 642


>gi|332161611|ref|YP_004298188.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665841|gb|ADZ42485.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 642

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    A+                         +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWTRAED-----------------DLAAALTENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    + S    A++ G
Sbjct: 451 PFDYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----ASYIG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G+M     ++   + G    W   V    +++           D
Sbjct: 500 ENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTWLAPVQVVVMNIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R  
Sbjct: 554 YVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + +  V++       + 
Sbjct: 614 KDLGSLDVNVVVDQLLAEIRSR 635


>gi|262052254|ref|ZP_06024459.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus 930918-3]
 gi|259159855|gb|EEW44894.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus 930918-3]
          Length = 645

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 161/445 (36%), Gaps = 33/445 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++   M+  P +      I+ +  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDRYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++    +
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMII 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDD 241
            ++   G +    R                  D  + + +   D   +          D+
Sbjct: 408 DVYKDFGFEDYSFRLS--------------YRDPEDKEKYFDDDDMWNKAENMLKEAADE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  ++ + + +S   ++    F    ++      T
Sbjct: 454 LGLSYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERFD----LT 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G DG+ H   +     G +  +   +    +     +P  +AP ++ +I +     + 
Sbjct: 503 YIGQDGEHHRPVVIHR--GVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNV--DLH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++  
Sbjct: 559 YDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +  +E +  +E I          +
Sbjct: 619 GSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|148244740|ref|YP_001219434.1| threonyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
 gi|166225515|sp|A5CWF9|SYT_VESOH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146326567|dbj|BAF61710.1| threonyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
          Length = 636

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 142/440 (32%), Gaps = 41/440 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD         L    I + + G+  W   G      V   +R     
Sbjct: 227 KVYLHKLEEVARRDHRKIGKTQDLF--HIQEETPGMVFWHAKGWILYQLVEQYMRGIFRD 284

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L    LW +SG +D +G  M       D+     P +      I+   +K
Sbjct: 285 NGYQEVHTPQLIDKSLWEKSGHWDKFGDVMFTTT-SGDRDYAVKPMNCPAHIQIYNQGLK 343

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYRNLP    +     R+E      G+MR R F+  D + F    +      +       
Sbjct: 344 SYRNLPLRLAEFGSCHRNEPSGTLHGIMRVRNFVQDDGHIFCTPEQIQDE-VSTFIDLTF 402

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G + I ++  + P     S E    ++    +   +K+ +              
Sbjct: 403 NVYKYFGFEKINIKLSTRPKKRVGSDEVWDKSEIALVEALNAKNIVWE------------ 450

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                + E   A Y    +     L D L    +     ++       G        A F
Sbjct: 451 -----LQEGEGAFYGPKIEFI---LKDCLDRQWQCGTLQVDFSMPKRLG--------AQF 494

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +  K   V +    +G++     ++   ++G    W             I    +  
Sbjct: 495 IDENSVKKTPVILHRAIMGSLERFLGILIEHYEGAYPCW------LSPIQAVIINISEKH 548

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                 I  +L K G  V  D   E++  +     L  +P  ++VG + +   +V ++ R
Sbjct: 549 AKFIVDIVKKLKKQGLRVISDLRNEKVSFKIREHSLQRYPYILVVGDREMEKGQVSVRQR 608

Query: 422 LTGIREDMSLEEVINYASHR 441
                  MS+   I   +  
Sbjct: 609 GGKDLGAMSVGTFIKKVNQE 628


>gi|257091083|ref|ZP_05585444.1| threonyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|256999895|gb|EEU86415.1| threonyl-tRNA synthetase [Enterococcus faecalis CH188]
          Length = 645

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 162/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++ R 
Sbjct: 231 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEIRL 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 289 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 349 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 409 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 455 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 504 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 560

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 561 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 620

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 621 SKETSVEDLSIFIDSMAAEVHNY 643


>gi|229019800|ref|ZP_04176603.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
 gi|229026025|ref|ZP_04182408.1| Threonyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228735241|gb|EEL85853.1| Threonyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228741525|gb|EEL91722.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 645

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 168/433 (38%), Gaps = 30/433 (6%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             GL++   R             +   ADT   + +   +  +          D++    
Sbjct: 416 DFGLENYSFRLS-----------YRDPADTK--KYYADDEMWEKAQGMLKEAMDEMGLDY 462

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV   ++  +L +++ +S   ++    F    ++      ++ G D
Sbjct: 463 YEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELSYVGED 511

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK H   +     G +  +   +    +     +P  +AP +  +I +    QV  D  +
Sbjct: 512 GKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQAQVIPVSP--QVHLDYAK 567

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++       
Sbjct: 568 KVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVAENGVNVRKYGEQKS 627

Query: 427 EDMSLEEVINYAS 439
           E ++L+  ++   
Sbjct: 628 ETIALDAFVDMIK 640


>gi|194366578|ref|YP_002029188.1| threonyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
 gi|238693469|sp|B4SQH4|SYT_STRM5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194349382|gb|ACF52505.1| threonyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
          Length = 633

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 143/443 (32%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ + ++  ++E   RD      +  L    + + + G+  W P G      V   +R+ 
Sbjct: 227 KQLEAYIKRIEEAEMRDHRRIGKQQDLF--HLQEEAPGLVFWHPKGWALWQVVEQYMRKV 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +TG  E+  P +    LW +SG +D+Y   M    +   +     P +      +F  
Sbjct: 285 YRKTGYGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYALKPMNCPGHVQVFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SYR+LP  + +     R+E      G++R R F   D + F  T    +        
Sbjct: 344 GLHSYRDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFC-TENQVEAEVTAFHQ 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L ++   G   I ++    P                           D    +  +  
Sbjct: 403 QALAVYQHFGFDEIQVKIALRPESR-----------------LGDDATWDKAEGALRSAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                    +    A Y    + H   L D++    ++    ++       G        
Sbjct: 446 SSNGVEWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLG-------- 494

Query: 300 ATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   +  K H V +    +G+M     ++   H G+   W         ++       
Sbjct: 495 AEYVDENSQKKHPVMLHRAIVGSMERFLGILIEHHAGQFPAWLAPTQVVVANIT------ 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +    +   L+  G  V  D   E+IG +     L   P  +++G +   +  V +
Sbjct: 549 DAQAEYVSDVTKTLADQGFRVSADLRNEKIGYKIREHTLQRVPYLLVIGDREKENGAVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R       MSL+  I      
Sbjct: 609 RTRSGEDLGSMSLQAFIERLQAE 631


>gi|313890276|ref|ZP_07823910.1| threonine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121381|gb|EFR44486.1| threonine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 648

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 163/448 (36%), Gaps = 36/448 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   M++ +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLTRLEEAKERDHRKLGKELDLF--MVNPEVGQGLPFWLPNGATIRRTLERYITDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P + S D +  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 ASGYQHVYTPPMASVDFYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    ++ +  R E       ++    +  +     +TP+  +  + +     
Sbjct: 347 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHLFVTPDQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDFD 240
           + ++    L     R                  D  + + +  + +  +          D
Sbjct: 407 IDVYKDFNLTDYRFRLS--------------YRDPNDKEKYFDNDEMWEKAQSMLKAALD 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 453 EMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I             +          I   ++ 
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPHQV----TVIPISNEA 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L   G  V  DD  E++  +   +     P Q+IVG K + +  V ++ 
Sbjct: 558 HVDYAWEVAKLLRDKGVRVDVDDRNEKMQYKIRASQTGKIPYQLIVGDKEMDEKSVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFS-NNRP 447
             + + + +++ E ++      S  +RP
Sbjct: 618 YGSKVTQTVAISEFVDTILADISRKSRP 645


>gi|294141074|ref|YP_003557052.1| threonyl-tRNA synthetase [Shewanella violacea DSS12]
 gi|293327543|dbj|BAJ02274.1| threonyl-tRNA synthetase [Shewanella violacea DSS12]
          Length = 642

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 143/439 (32%), Gaps = 40/439 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + + + G+  W   G +    +   IR++  +   
Sbjct: 233 LNRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWRLFLELETFIRQKLGQYTY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y + M       ++     P +      IF   +KSYR
Sbjct: 291 QEVKGPLMMDRVLWERSGHWDKYSEAMFT-TKSENREYAIKPMNCPGHVQIFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +   +         +
Sbjct: 350 DLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQVQQEVSACIQMVYDTY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G K+I ++  + P       E                   D    +           
Sbjct: 409 ETFGFKNIVVKLSTRPEQRIGDDE-----------------MWDRAEEALKQALTANDIE 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I+    A Y    +     L D L    +     ++       G        AT+   
Sbjct: 452 FEILPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPGRLG--------ATYVAE 500

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D        +    +G++     ++   + GK   W   +    +++           + 
Sbjct: 501 DNSRQTPVMIHRAILGSLERFLGILIEEYAGKFPTWLAPMQVVVMNIT------DKQSNY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++   L + G     D   E+IG +     L   P  ++VG + + + +V ++ R   
Sbjct: 555 ADEVVNLLKENGIRASKDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTRDGV 614

Query: 425 IREDMSLEEVINYASHRFS 443
               M +EE     + + S
Sbjct: 615 DLGKMRIEEFAAKINKQIS 633


>gi|195978510|ref|YP_002123754.1| threonyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975215|gb|ACG62741.1| threonyl-tRNA synthetase ThrS [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 655

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 161/449 (35%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   M+  +  +G+  WLP G      +   I +++ 
Sbjct: 236 KAYLTRLEEAKERDHRKLGKELDLF--MVSQEVGQGLPFWLPNGATIRRTLERYITDKEL 293

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      ++++H
Sbjct: 294 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNH 353

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    ++ +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 354 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHLFVTPEQIQEEFQRALQLI 413

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R                       + + + +  +          D+
Sbjct: 414 IDVYEDFNLTDYRFRLS-------------YRDPKDTHKYYDNDEMWENAQSMLKAALDE 460

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L   + +S   ++    F    ++    + +
Sbjct: 461 MGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERF----NLS 509

Query: 302 FKGADGKDHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + GADG++H   M   G+     R  A +IE+                   +  I   ++
Sbjct: 510 YIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPRQ------VTVIPISNE 563

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 564 AHIDYAWEVAKTLRDHGIRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMEDKSVNVR 623

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +      ++   ++         +RP
Sbjct: 624 RYGSKATHTEAIAAFVDNILADIARKSRP 652


>gi|169824388|ref|YP_001691999.1| threonyl-tRNA synthetase [Finegoldia magna ATCC 29328]
 gi|238687735|sp|B0S169|SYT_FINM2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167831193|dbj|BAG08109.1| threonyl-tRNA synthetase [Finegoldia magna ATCC 29328]
          Length = 634

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 161/443 (36%), Gaps = 39/443 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L +  I +   G   + P G   L+ +   ++E+    
Sbjct: 230 EYLDRMEEAKKRDHRKIGKEMGLFS--IQEEGPGFPFFHPNGMVVLNELEKFLKEQLLER 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  ++  P + +  LW +SG +D Y + M      + +     P +      +++  + S
Sbjct: 288 GYGQIKTPLILNEHLWHQSGHWDHYKENM-YFTKIDGEDYAIKPMNCPGSILVYKDELHS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++    R EL     G+ R R F+  DA+ F L PE  +   +K       
Sbjct: 347 YRELPIKVAELGQVHRHELSGALHGLFRVRTFVQDDAHVFCL-PEQIEEEVSKTIDFCDY 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I+ + G K   +   + P     S E                   D  I S     +   
Sbjct: 406 IYSKFGFKYE-VELSTRPEDSMGSDE-----------------DWDLAISSLKNALEHKG 447

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D H E   D++    +     ++    F    ++ +   A+  
Sbjct: 448 LPYKINEGDGAFYGPKIDFHLE---DAIGRTWQCGTIQLD----FQMPERFDMTYIAS-- 498

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               K     +    +G+      ++    +     +P  ++P ++ ++ I        D
Sbjct: 499 -DGSKKRPAMIHRAILGSEERFMGILI---EHYAGKFPLWLSPVQVEILPISDK---FND 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  ++   G  V  DD  E+IG +   + L      +I+G   + +++V ++ R  
Sbjct: 552 YAYELQQKMKARGLRVKVDDRSEKIGLKIRESQLKKVNYSLIIGQNEIDNNEVSVRKRDI 611

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
           G     + +E IN     + N +
Sbjct: 612 GDVGSKNTDEFINELVDEYQNRK 634


>gi|332992302|gb|AEF02357.1| prolyl-tRNA synthetase [Alteromonas sp. SN2]
          Length = 554

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 118/235 (50%), Positives = 160/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLATQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLNKVANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G +E+ +P +Q ADLW ESGR++ YG E+LR+ DR+ +  + GPTHEEV+T + R+
Sbjct: 61  MNKAGGVEVLMPVVQPADLWEESGRWEEYGPELLRIKDRHQRDFVLGPTHEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE+RPRFG+MR REF MKDAYSF L       +Y  M+ +
Sbjct: 121 EISSYKQLPINLYQIQTKFRDEVRPRFGIMRGREFTMKDAYSFHLDDTCLDKTYQTMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF+R+GL    + A+SG IGG+ SHEF VLA++GE  +  + D  D+    E
Sbjct: 181 YGNIFNRMGLDYRAVIADSGSIGGNHSHEFHVLAESGEDAIAFASD-SDYAANVE 234



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 69/186 (37%), Positives = 106/186 (56%), Gaps = 3/186 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T+D+ N    D+ P+        RGIEVGHIF  G+KYS  M+       GK   + MG 
Sbjct: 369 TADLRNIVAGDASPDGNGTIEIKRGIEVGHIFQLGSKYSEAMNCGVLSETGKHQTLTMGC 428

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKV 375
           YGIG  R+VAA IE +HD  GI+WPD +APFKI+LI +        ++A E +Y +L  +
Sbjct: 429 YGIGVSRIVAAAIEQNHDKYGIMWPDPIAPFKIALIPMNMHKSHRIKEAAEALYEQLIAL 488

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV +DD  E+ G  F   +L+G P  +++G + + + ++E K+R TG ++ + L+   
Sbjct: 489 GIDVLFDDRKERPGVMFNDMELIGIPHSIVIGERNLDNQQIEYKNRRTGEKQLLDLDSAK 548

Query: 436 NYASHR 441
           ++    
Sbjct: 549 DFVVSL 554


>gi|238757782|ref|ZP_04618965.1| Threonyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
 gi|238704025|gb|EEP96559.1| Threonyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
          Length = 642

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    A+                         +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWTRAED-----------------DLAAALTENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    + S    A++ G
Sbjct: 451 PFDYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----ASYIG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G+M     ++   + G    W   V    +++           D
Sbjct: 500 ENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTWLAPVQVVVMNIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R  
Sbjct: 554 YVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + +  V++       + 
Sbjct: 614 KDLGSLDVNVVVDKLLTEIRSR 635


>gi|228900981|ref|ZP_04065194.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
 gi|228858679|gb|EEN03126.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
          Length = 640

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 153/443 (34%), Gaps = 40/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TP+  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPKQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             +        +    +G++    A++     G    W        + +  +   + V  
Sbjct: 501 DENNDKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVVPVSNAVHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             C ++  +L++ G  V  D   E++G +   A +   P  +++G K +    V ++   
Sbjct: 556 QYCSEVAHKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYFLVIGDKEMESGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
               E ++L+  +        N 
Sbjct: 616 EEKSEVVALDVFVARIEEEIKNR 638


>gi|55820651|ref|YP_139093.1| threonyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55822542|ref|YP_140983.1| threonyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
 gi|116627458|ref|YP_820077.1| threonyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
 gi|73919831|sp|Q5M0T3|SYT_STRT1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73919832|sp|Q5M5B9|SYT_STRT2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122267944|sp|Q03LP1|SYT_STRTD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|55736636|gb|AAV60278.1| threonyl-tRNA synthetase 1 [Streptococcus thermophilus LMG 18311]
 gi|55738527|gb|AAV62168.1| threonyl-tRNA synthetase 1 [Streptococcus thermophilus CNRZ1066]
 gi|116100735|gb|ABJ65881.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Streptococcus
           thermophilus LMD-9]
 gi|312277977|gb|ADQ62634.1| Threonyl-tRNA synthetase ThrS [Streptococcus thermophilus ND03]
          Length = 648

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 161/447 (36%), Gaps = 34/447 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLKRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     + PE  +  + K+    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVAPEQIEEEFKKILQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R             +   AD    + F + +  +          DD
Sbjct: 407 IDVYEDFNLTDYRFRLS-----------YRDPADK--HKYFDNDEMWENAQRMLKAAVDD 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++ L     
Sbjct: 454 MGVEYYEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFDLH---- 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRAEVDERNEKMQFKIRASQTQKIPYQLIVGDKEMKDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRF-SNNRP 447
                   ++ E +          +RP
Sbjct: 619 GQKQTHTETVSEFVENILADIARKSRP 645


>gi|148826837|ref|YP_001291590.1| threonyl-tRNA synthetase [Haemophilus influenzae PittGG]
 gi|166223345|sp|A5UEK1|SYT_HAEIG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148718079|gb|ABQ99206.1| threonyl-tRNA synthetase [Haemophilus influenzae PittGG]
          Length = 643

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 144/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 QYDYQEVKGPFMMDRVLWEKTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P     S E                   D            
Sbjct: 405 YDIYSTFGFTNIAVKLSTRPENRIGSDE-----------------MWDRAEAGLAAALAH 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                AT
Sbjct: 448 NGLEYEIQEGEGAFYGPKIEF---ALRDCLGREWQCGTVQLDFALPGRLD--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE      ++  + 
Sbjct: 611 RKGADLGTFTVEEFAEILKNQVRSR 635


>gi|88859310|ref|ZP_01133950.1| threonyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
 gi|88818327|gb|EAR28142.1| threonyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
          Length = 636

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 136/442 (30%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD       L L      + + G+  W   G      +   +RE+     
Sbjct: 232 YLKRLEEAEKRDHRKIGKALDL--WHWQEEAPGMVFWHNDGWSIYRELEDFVREKLREYK 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D Y   M        +     P +      IF   +KSY
Sbjct: 290 YEEVKGPLMMDRSLWEKSGHWDKYADAMFT-TVSEKREYAIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      +         
Sbjct: 349 RDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQVMDE-VSACIKMVYDT 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P                           D    +          
Sbjct: 408 YETFGFEKIVVKLSTRPENR-----------------IGDDATWDQSEKALAEALTHNGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    +     L+D L    +     ++       G        AT+  
Sbjct: 451 EFDYLPGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFALPGRLG--------ATYVA 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +      +    +G++     ++   + G    W        +++           D
Sbjct: 500 ENNERRTPVMIHRAILGSIERFIGILTEEYAGLFPTWLAPKQVVVMNIT------DKQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C  I  +L+K+G     D   E+IG +     L   P  ++VG K V   +V ++ R  
Sbjct: 554 YCHNIVEKLNKLGFRACADLRNEKIGFKIREHTLKRIPYLLVVGDKEVEQEEVAVRTRTG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                  +++ I   S    N 
Sbjct: 614 DDLGKFKVDDFIAKLSDEIKNR 635


>gi|296127837|ref|YP_003635089.1| threonyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
 gi|296019653|gb|ADG72890.1| threonyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
          Length = 643

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/443 (20%), Positives = 166/443 (37%), Gaps = 41/443 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      +L L +   H+   G   W P G      V + IR E ++ G
Sbjct: 229 YLKRLKEAKERDHRKLGKELNLFS--FHEEGPGFPFWHPRGMVIYKAVESYIRNENDKRG 286

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P + + +LW  SG +D+Y + M    + ++      P +      ++ S+I SY
Sbjct: 287 YVEIKTPAILNEELWHRSGHWDNYKENM-YFTEIDETKYAVKPMNCPGGLIVYNSNIHSY 345

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++    R EL     G+ R R F   DA+ F    +            YL +
Sbjct: 346 RDLPLRVAELGFVHRHELSGALHGLFRVRAFTQDDAHIFCTEEQLGDE-IINTIEYYLSV 404

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G ++  +   + P     S E                   +    S     D +  
Sbjct: 405 YKDFGFENFEIFVSTRPAKSIGSDE-----------------IWELATKSLINALDKLGI 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D     + D L  N +     ++    F    ++      +++G
Sbjct: 448 KYKINEGDGAFYGPKIDF---NIKDVLDRNWQCGTLQVD----FSLPMRF----EISYEG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CR 362
            DG+ H    +    +G+M     ++   ++GK  +W        + +  +   D+    
Sbjct: 497 KDGRKHTPVMLHRAILGSMERFIGILVEHYNGKFPLWLS-----PLQVAVVNVLDEKSQI 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++   L   G  V  D+  E +G++     L   P  VI+G++ VS+ K+ I+ R 
Sbjct: 552 DRVNEVAKALKDAGFRVETDEGNENLGTKIKKYRLQRTPYTVIIGAEEVSNGKLSIRTRS 611

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +   +DM L E I          
Sbjct: 612 SQEIKDMDLNEFIEKLKKESKER 634


>gi|225870895|ref|YP_002746842.1| threonyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
 gi|225700299|emb|CAW94574.1| threonyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
          Length = 655

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 162/449 (36%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 236 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRTLERYITDKEL 293

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      ++++H
Sbjct: 294 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNH 353

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    ++ +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 354 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHLFVTPEQIQEEFQRALQLI 413

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R                       + + + +  +          D+
Sbjct: 414 IDVYEDFNLTDYRFRLS-------------YRDPKDTHKYYDNDEMWENAQSMLKAALDE 460

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           + +     E   A Y    D+   ++  +L   + +S   ++    F    ++    + +
Sbjct: 461 MGADYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERF----NLS 509

Query: 302 FKGADGKDHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + GADG++H   M   G+     R  A +IE+                   +  I   ++
Sbjct: 510 YIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPRQ------VTVIPISNE 563

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 564 AHIDYAWEVAKILRDHGIRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMQDKSVNVR 623

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +      ++   ++         +RP
Sbjct: 624 RYGSKATHTEAISAFVDNILADIARKSRP 652


>gi|114047517|ref|YP_738067.1| threonyl-tRNA synthetase [Shewanella sp. MR-7]
 gi|123326545|sp|Q0HV45|SYT_SHESR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113888959|gb|ABI43010.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Shewanella sp.
           MR-7]
          Length = 642

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 143/443 (32%), Gaps = 40/443 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +   + +   RD      +L L    + + + G+  W   G      +   IR + N
Sbjct: 229 LSTHLARLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELERFIRRKLN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW  SG +D Y + M       ++     P +      IF   +
Sbjct: 287 QYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFT-TSSENREYAVKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +   +      
Sbjct: 346 KSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQVQAEVSSCIQMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G ++I ++  + P                           D    +       
Sbjct: 405 YDTYSTFGFENIVVKLSTRPEKR-----------------IGDDAMWDRAEEALKQALRA 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +I+    A Y    +     L D L    +     ++       G        AT
Sbjct: 448 KNIEFTILPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPSRLG--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     ++   + G+   W   +    +++         
Sbjct: 497 YVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGRFPTWLAPMQVVVMNIT------DK 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  E++     + G    +D   E+IG +     L   P  ++VG + + + +V ++ 
Sbjct: 551 QADYVEEVVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R       M +E+       + S
Sbjct: 611 RDGVDLGKMRIEDFAAKIHQQIS 633


>gi|149180875|ref|ZP_01859377.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148851394|gb|EDL65542.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 647

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 163/442 (36%), Gaps = 38/442 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +YFL + +   R+     ++L L   M  + + G+  +L  GQK  + + + +R+ QN  
Sbjct: 234 EYFLFLEEAQKRNHRKLGNELELF--MFSEEAPGMPFYLNNGQKIRNELESFLRQIQNSF 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + +  LW +SG ++ Y + M   ++ +D++    P +      IF+  + S
Sbjct: 292 DYEEVRTPIMMNRKLWEQSGHWEHYKENM-YFSEVDDQSFALKPMNCPGHMLIFKDKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R E      G++R R F   DA+ F  TP+  +            
Sbjct: 351 YRDLPIRMAEFGQVHRHEFSGALNGMLRVRTFCQDDAHIFV-TPDQIEEEITSALKLIDH 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G         + P                       +   D    S       + 
Sbjct: 410 VYRTFGFNYDI-ELSTRP-----------------EDYMGEEALWDKAEGSLKNVLTKLG 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              SI E   A Y    D+H   + D+L  + + +   ++    F    K+       + 
Sbjct: 452 YSFSINEGDGAFYGPKIDIH---IKDALKRSHQCATVQLD----FQMPEKF----ELHYI 500

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             + +     +    +     +   +    +     +P  ++P ++S+I +         
Sbjct: 501 DENNQKVRPVVIHRAV--FGSIDRFLGILIEHFAGAFPVWLSPLQVSVIPVSKRHHGQ-- 556

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            CE+I +RL + G  V  D   E++G +   A +   P  ++VG K      V ++    
Sbjct: 557 YCEEIRSRLKEEGLRVECDLREEKLGYKIREAQMKKAPYILVVGDKEQESQTVNVRSYGE 616

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              ++  LEE I     +  + 
Sbjct: 617 QNSQEEKLEEFIARVKQQIRDK 638


>gi|77164414|ref|YP_342939.1| prolyl-tRNA synthetase [Nitrosococcus oceani ATCC 19707]
 gi|254434306|ref|ZP_05047814.1| prolyl-tRNA synthetase [Nitrosococcus oceani AFC27]
 gi|114152222|sp|Q3JCN7|SYP_NITOC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|76882728|gb|ABA57409.1| Prolyl-tRNA synthetase [Nitrosococcus oceani ATCC 19707]
 gi|207090639|gb|EDZ67910.1| prolyl-tRNA synthetase [Nitrosococcus oceani AFC27]
          Length = 574

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 130/332 (39%), Positives = 181/332 (54%), Gaps = 3/332 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAEI SH+LMLR   I + + G+Y+WLPLG + L  V  IIREE
Sbjct: 1   MRTSQYLLTTTRETPADAEIISHQLMLRGSFIRRLAAGLYTWLPLGLRVLRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +P +Q A+LW E+GR++ YG E+LR  DR+ +   +GPTHEEV+TD+ R 
Sbjct: 61  MDKAGAQEVLMPAVQPAELWRETGRWEQYGPELLRFTDRHQRFFCFGPTHEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQLKFRDE+RPRFGVMRSREFLMKDAYSF         +YN+M+ +
Sbjct: 121 EIRSYKQLPANFYQIQLKFRDEIRPRFGVMRSREFLMKDAYSFHPDQTSLAQTYNQMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK---DFMDFPIPSENT 237
           Y RIF R+GL    ++A++G IGG  SHEF VLA +GE  +  S       +  + +   
Sbjct: 181 YSRIFDRIGLTFRAVQADTGAIGGKTSHEFHVLAASGEDAIAFSDKSTYAANVELAAALP 240

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D   S    +     P   T    ++ L        +        G +     +    
Sbjct: 241 PTDKPASPKETLSLIETPGQCTIKEISQFLNIPSSRCIKTLLVQGSEGELVALALRGDHE 300

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           ++A       +       +      +   A I
Sbjct: 301 LNAVKAQKLPQVANPLQFATPEQVWKTCNASI 332



 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/192 (37%), Positives = 105/192 (54%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P  +T+D+ N    D  P+ +     ARGIEVGHIF  G KYS  M+AT     G+   +
Sbjct: 377 PEPSTADIRNVVDGDPSPDGEGTLSIARGIEVGHIFQLGEKYSQAMNATVLDETGRAISL 436

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD  GIIWP S+APF+++L+ I AH     ++  +++Y  
Sbjct: 437 AMGCYGIGVSRVVAAAIEQNHDEHGIIWPASIAPFQLALVPINAHKSARVKEMSDRLYTE 496

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V  DD   + G  FA  DL+G P ++++  + + ++ VE K R  G    + L
Sbjct: 497 LQAAGFEVLLDDRQLRPGVIFADMDLIGIPYRLVISERGLENNTVEYKRRQDGKTCAIQL 556

Query: 432 EEVINYASHRFS 443
           +  I+       
Sbjct: 557 DNFISGLKAELK 568


>gi|75812508|ref|YP_320127.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Anabaena
           variabilis ATCC 29413]
 gi|75705264|gb|ABA24938.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Anabaena
           variabilis ATCC 29413]
          Length = 614

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 161/442 (36%), Gaps = 38/442 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y     +   RD      +L L +  I +    G+  W P G      +    R+    +
Sbjct: 206 YLKQREEALRRDHRKLGQELNLFS--IQEDAGGGLVFWHPKGAIIRYIIEDYWRKSHLES 263

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + + DLW  SG +D Y + M    D  ++A    P +       ++  + S
Sbjct: 264 GYQLLYTPHIANLDLWKTSGHFDFYQENMFDSMDVENQAYQIKPMNCPFHVLTYKHQLHS 323

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  + ++   +R E      G+MR R F   DA+ F L P         +     +
Sbjct: 324 YRELPLRWAELGTVYRYERSGALHGLMRVRGFTQDDAHVFCL-PNQIADEILGVLNLTEQ 382

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G K+  +   + P     + E                   +    +     +   
Sbjct: 383 ILSDFGFKNYEVNLSTRPEKSVGNDE-----------------VWELATSALRQALNTKG 425

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D+   K+ D++    + S   ++    F    ++ +   A   
Sbjct: 426 WNYIVDEGGGAFYGPKIDI---KIQDAIGRLWQCSTIQVD----FNLPERFDMEYIAV-- 476

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               +   + +     G++     ++    +     +P  +AP ++ L+ +       R+
Sbjct: 477 -DGSRQRPIMIHRAIFGSLERFFGILI---ENYSGDFPLWLAPVQLRLLPV---SDEVRE 529

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L K G  V  D  GE++G Q   A+L   P+  +VG K V +  + ++ R +
Sbjct: 530 YAQLVVISLKKAGIRVETDSSGERLGKQIRTAELEKIPVVAVVGKKEVENQNLSVRTRQS 589

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    ++++E+++      ++ 
Sbjct: 590 GDLGVLNMDEILHRLQDAINSK 611


>gi|82751271|ref|YP_417012.1| threonyl-tRNA synthetase [Staphylococcus aureus RF122]
 gi|123768508|sp|Q2YTA7|SYT_STAAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|82656802|emb|CAI81231.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus RF122]
          Length = 645

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 161/445 (36%), Gaps = 33/445 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++   M+  P +      I+ +  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++    +
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMII 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDD 241
            ++   G +    R                  D  + + +   D   +          D+
Sbjct: 408 DVYKDFGFEDYSFRLS--------------YRDPEDKEKYFDDDDMWNKAENMLKEAADE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  ++ + + +S   ++    F    ++      T
Sbjct: 454 LGLSYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERFD----LT 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G DG+ H   +     G +  +   +    +     +P  +AP ++ +I +     + 
Sbjct: 503 YIGQDGEHHRPVVIHR--GVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNV--DLH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++  
Sbjct: 559 YDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKTPYQIVVGDKEVENNQVNVRQY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +  +E +  +E I          +
Sbjct: 619 GSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|329996732|ref|ZP_08302530.1| proline--tRNA ligase [Klebsiella sp. MS 92-3]
 gi|328539331|gb|EGF65355.1| proline--tRNA ligase [Klebsiella sp. MS 92-3]
          Length = 572

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDS-SDYAANIE 234



 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 110/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A  +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKAAVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+YA LS 
Sbjct: 443 CYGIGVTRVVAAAIEQNFDDRGIVWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELSA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           + Y      
Sbjct: 563 VEYLVKAIK 571


>gi|238893191|ref|YP_002917925.1| prolyl-tRNA synthetase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545507|dbj|BAH61858.1| prolyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 572

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDS-SDYAANIE 234



 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 69/189 (36%), Positives = 109/189 (57%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A  +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKAAVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y  LS 
Sbjct: 443 CYGIGVTRVVAAAIEQNFDDRGIVWPDAIAPFQVAILPMNMHKSYRVQELAEKLYTELSA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           + Y      
Sbjct: 563 VEYLVKAIK 571


>gi|225868159|ref|YP_002744107.1| threonyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
 gi|259516675|sp|C0MCN7|SYT_STRS7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225701435|emb|CAW98547.1| threonyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
          Length = 648

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 160/449 (35%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLTRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRTLERYITDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG ++ Y ++M    D  D +  +  P +      ++++H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWEHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    ++ +  R E       ++    +  +     + PE  +  + +     
Sbjct: 347 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHLFVMPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R                       + + + +  +          D+
Sbjct: 407 IDVYEDFNLTDYRFRLS-------------YRDPKDTHKYYDNDEMWENAQSMLKAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L   + +S   ++    F    ++    + +
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERF----NLS 502

Query: 302 FKGADGKDHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + GADG++H   M   G+     R  A +IE+                   +  I   ++
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPRQ------VTVIPISNE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   +     P Q+IVG K + D  V ++
Sbjct: 557 AHIDYAWEVAKTLRDHGIRADVDDRNEKMQYKIRASQTSKIPYQLIVGDKEMQDKSVNVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +      ++   ++         +RP
Sbjct: 617 RYGSKATHTEAISAFVDNILADIARKSRP 645


>gi|152968789|ref|YP_001333898.1| prolyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|166980131|sp|A6T4Z7|SYP_KLEP7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150953638|gb|ABR75668.1| prolyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 572

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDS-SDYAANIE 234



 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 110/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A  +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKAAVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+YA LS 
Sbjct: 443 CYGIGVTRVVAAAIEQNFDDRGIVWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELSA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           + Y      
Sbjct: 563 VEYLVKAIK 571


>gi|113970292|ref|YP_734085.1| threonyl-tRNA synthetase [Shewanella sp. MR-4]
 gi|117920487|ref|YP_869679.1| threonyl-tRNA synthetase [Shewanella sp. ANA-3]
 gi|123029660|sp|Q0HIT9|SYT_SHESM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225501|sp|A0KWV4|SYT_SHESA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113884976|gb|ABI39028.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Shewanella sp.
           MR-4]
 gi|117612819|gb|ABK48273.1| threonyl-tRNA synthetase [Shewanella sp. ANA-3]
          Length = 642

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 143/443 (32%), Gaps = 40/443 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +   + +   RD      +L L    + + + G+  W   G      +   IR + N
Sbjct: 229 LSTHLARLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELERFIRRKLN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW  SG +D Y + M       ++     P +      IF   +
Sbjct: 287 QYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFT-TSSENREYAVKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +   +      
Sbjct: 346 KSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQVQAEVSSCIQMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G ++I ++  + P                           D    +       
Sbjct: 405 YDTYSTFGFENIVVKLSTRPEKR-----------------IGDDAMWDRAEEALKQALRA 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +I+    A Y    +     L D L    +     ++       G        AT
Sbjct: 448 NNIEFTILPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPSRLG--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     ++   + G+   W   +    +++         
Sbjct: 497 YVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGRFPTWLAPMQVVVMNIT------DK 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  E++     + G    +D   E+IG +     L   P  ++VG + + + +V ++ 
Sbjct: 551 QADYVEEVVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R       M +E+       + S
Sbjct: 611 RDGVDLGKMRIEDFAAKIHQQIS 633


>gi|312863291|ref|ZP_07723529.1| threonine--tRNA ligase [Streptococcus vestibularis F0396]
 gi|311100827|gb|EFQ59032.1| threonine--tRNA ligase [Streptococcus vestibularis F0396]
          Length = 648

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 160/447 (35%), Gaps = 34/447 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLKRLEEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     + PE  +  + K+    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVAPEQIEDEFKKILQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R             +   AD    + F + +  +          DD
Sbjct: 407 IDVYEDFNLTDYRFRLS-----------YRDPADK--HKYFDNDEMWENAQRMLKAAVDD 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++ L     
Sbjct: 454 MGVEYYEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFDLH---- 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKELRDRGVRAEVDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRF-SNNRP 447
                   ++ E +          +RP
Sbjct: 619 GQKQTHTETVSEFVENILADIARKSRP 645


>gi|303253033|ref|ZP_07339186.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307247204|ref|ZP_07529254.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302648123|gb|EFL78326.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306856262|gb|EFM88415.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 643

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 138/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRRIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW  +G + +Y  +++      ++     P +      IF   +
Sbjct: 287 EYDYQEVKGPFMMDRVLWERTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIRMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P                           D            
Sbjct: 405 YDIYSTFGFSNIQVKLSTRPENR-----------------IGDDAMWDRTEDGLAKALTA 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                A+
Sbjct: 448 NGLSYEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTIQLDFALPGRLD--------AS 496

Query: 302 FKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    +G+   V +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   LS  G     D   E++G +     L   P  ++ G K +   KV ++ 
Sbjct: 551 QADYVQKVTKALSDAGIRAKSDLRNEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVSVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        +++E +    ++    
Sbjct: 611 RKGADLGTFTIDEFVEILKNQVKAR 635


>gi|163782015|ref|ZP_02177014.1| threonyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882547|gb|EDP76052.1| threonyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 641

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/437 (19%), Positives = 149/437 (34%), Gaps = 42/437 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            +   RD       L     MI +    G+  WLP G      +    +EE  + G   +
Sbjct: 240 EEAKKRDHRKLGRDLEFF--MIDENVGAGLVLWLPRGSIYRKVLEDYWKEEHIKRGYQFV 297

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P +  + LW  SG  + Y   M    +   +     P +      I++S ++SY++LP
Sbjct: 298 YTPHVGKSKLWEISGHLECYKPNMFPAMEMEGEEYYVKPMNCPFHIAIYKSKVRSYKDLP 357

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++   +R E+     G++R R F   DA+    TPE             L +    
Sbjct: 358 VKLAELGTVYRYEMSGVLHGLLRVRGFTQDDAHIIC-TPEQVDEVIRDTLDLALSMLKDF 416

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G     +   + P     S E                   +    +     +D+     I
Sbjct: 417 GFDDFKIYVSTRPEDAIGSDE-----------------QWEVSENALKKAVEDLGYTYEI 459

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    DV   K+ D++    + S    +    F    ++ +    T+ G D K
Sbjct: 460 DEGGGAFYGPKIDV---KIRDAIGRLWQCSTIQFD----FNLPERFDM----TYVGPDNK 508

Query: 309 DHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            H   M          R    ++E       +    + A                 +   
Sbjct: 509 KHRPYMIHRAFLGSIERFTGILLEHYAGLLPVWLSPTQARIVPIA-------DRHLEYGR 561

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+ +RL + G  V  D+  E++ ++   A+L+  P  ++VG + V    V ++ +  G  
Sbjct: 562 KVLSRLQEEGFRVDMDERDERMNAKIREAELMKIPYVLVVGDREVEAGTVSVRSKKEGNL 621

Query: 427 EDMSLEEVINYASHRFS 443
             MSLEE I +   +  
Sbjct: 622 GSMSLEEFIEHLREKVE 638


>gi|322389968|ref|ZP_08063508.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
 gi|321143404|gb|EFX38842.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
          Length = 647

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 158/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I +++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
             G   +  P + S +L+  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 287 AAGYQHVYTPPIASVELYKTSGHWDHYREDMFPPMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     + PE  +  + K+    
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHTFVAPEQIEEEFKKILQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          DD
Sbjct: 407 IDVYEDFNLTDYRFRLS-----YRDPEDKHKYFDNDEM--------WENAQRMLKAAVDD 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++ L     
Sbjct: 454 MGVEYYEAEGEAAFYGPKLDI---QVKTALGKEETLSTIQLD----FLLPERFDLH---- 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTQKIPYQLIVGDKEMEDKAVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                E MS++  +       +N 
Sbjct: 619 GQKETETMSVDAFVELILTDIANK 642


>gi|161621298|ref|YP_585241.2| prolyl-tRNA synthetase [Cupriavidus metallidurans CH34]
 gi|114152237|sp|Q1LIQ4|SYP_RALME RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 573

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 126/276 (45%), Positives = 171/276 (61%), Gaps = 3/276 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYNYMPVGLRVIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+S+P +Q A+LW E+GR+D  G E+LRL DR+++     PT EEV+TDI R+
Sbjct: 61  MNRAGAVELSMPVIQPAELWQETGRWDKMGPELLRLKDRHERDFAVQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   +G K SY  M+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDIDGLKASYQNMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF R GL+   + A++G IGG  SHEF V+ADTGE  +                   
Sbjct: 181 YVRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYCPTSDYAANMEAAEALP 240

Query: 241 DIISLNSIVEQWTA---PYAATSDVHNEKLFDSLPE 273
            + +  +  E+      P  A  +   E L   L  
Sbjct: 241 LLATRAAPAEELKKTSTPEKAKCEHVAEFLGIPLER 276



 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 68/172 (39%), Positives = 102/172 (59%), Gaps = 3/172 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P  A +D+ N    D+ P+ K      RGIEVGH+F  GT+YS  M+ATF   +GK   +
Sbjct: 381 PEPAVADLRNVVAGDASPDGKGTLDICRGIEVGHVFMLGTRYSESMNATFLDENGKTQPM 440

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  R++ A IE ++D +GIIWP ++APF + +  +    ++  +   ++I+A 
Sbjct: 441 QMGCYGIGVTRILGAAIEQNYDERGIIWPAAIAPFAVVVCPVGYDRNEAVKAEADRIHAE 500

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           L   G DV  DD GE+ G  FA  +L+G P +V+VG + + + KVE + R  
Sbjct: 501 LLAAGVDVILDDRGERPGVMFADWELIGVPHRVVVGDRGLKEGKVEYQGRRD 552


>gi|323964912|gb|EGB60378.1| prolyl-tRNA synthetase [Escherichia coli M863]
 gi|327255174|gb|EGE66777.1| prolyl-tRNA synthetase [Escherichia coli STEC_7v]
          Length = 572

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 113/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 VVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           ++Y   +  
Sbjct: 563 VDYLVKQIK 571


>gi|306815206|ref|ZP_07449355.1| prolyl-tRNA synthetase [Escherichia coli NC101]
 gi|305850868|gb|EFM51323.1| prolyl-tRNA synthetase [Escherichia coli NC101]
          Length = 572

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 113/187 (60%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGSLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++++
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVD 564

Query: 437 YASHRFS 443
           Y   +  
Sbjct: 565 YLVKQIK 571


>gi|218547650|ref|YP_002381441.1| prolyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|226701288|sp|B7LW79|SYP_ESCF3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218355191|emb|CAQ87798.1| prolyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|323975637|gb|EGB70733.1| prolyl-tRNA synthetase [Escherichia coli TW10509]
          Length = 572

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 113/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           ++Y   +  
Sbjct: 563 VDYLVKQIK 571


>gi|170768387|ref|ZP_02902840.1| prolyl-tRNA synthetase [Escherichia albertii TW07627]
 gi|170122491|gb|EDS91422.1| prolyl-tRNA synthetase [Escherichia albertii TW07627]
          Length = 572

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 112/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           +++      
Sbjct: 563 VDFLLKAIK 571


>gi|237704354|ref|ZP_04534835.1| prolyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|26106541|gb|AAN78727.1|AE016755_227 Prolyl-tRNA synthetase [Escherichia coli CFT073]
 gi|91070839|gb|ABE05720.1| prolyl-tRNA synthetase [Escherichia coli UTI89]
 gi|226902266|gb|EEH88525.1| prolyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
          Length = 590

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 19  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 78

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 79  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 138

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 139 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 199 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 252



 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 113/187 (60%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 403 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 462

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 463 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 522

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++++
Sbjct: 523 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVD 582

Query: 437 YASHRFS 443
           Y   +  
Sbjct: 583 YLVKQIK 589


>gi|110640415|ref|YP_668143.1| prolyl-tRNA synthetase [Escherichia coli 536]
 gi|117622479|ref|YP_851392.1| prolyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|161486316|ref|NP_752183.2| prolyl-tRNA synthetase [Escherichia coli CFT073]
 gi|162138494|ref|YP_539251.2| prolyl-tRNA synthetase [Escherichia coli UTI89]
 gi|170680577|ref|YP_001742323.1| prolyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|191171415|ref|ZP_03032964.1| prolyl-tRNA synthetase [Escherichia coli F11]
 gi|215485356|ref|YP_002327787.1| prolyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|218557136|ref|YP_002390049.1| prolyl-tRNA synthetase [Escherichia coli S88]
 gi|218688070|ref|YP_002396282.1| prolyl-tRNA synthetase [Escherichia coli ED1a]
 gi|227884892|ref|ZP_04002697.1| proline--tRNA ligase [Escherichia coli 83972]
 gi|300977725|ref|ZP_07174019.1| prolyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|300990442|ref|ZP_07179210.1| prolyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|301046653|ref|ZP_07193784.1| prolyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|331661266|ref|ZP_08362198.1| proline--tRNA ligase [Escherichia coli TA206]
 gi|331681580|ref|ZP_08382217.1| proline--tRNA ligase [Escherichia coli H299]
 gi|114152192|sp|Q8FKZ4|SYP_ECOL6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152193|sp|Q1RFZ4|SYP_ECOUT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123148404|sp|Q0TLD7|SYP_ECOL5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152112309|sp|A1A7N8|SYP_ECOK1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226699141|sp|B7MBH6|SYP_ECO45 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701285|sp|B1LGZ7|SYP_ECOSM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782899|sp|B7UJ96|SYP_ECO27 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782901|sp|B7MP55|SYP_ECO81 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110342007|gb|ABG68244.1| prolyl-tRNA synthetase [Escherichia coli 536]
 gi|115511603|gb|ABI99677.1| prolyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|170518295|gb|ACB16473.1| prolyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|190908349|gb|EDV67939.1| prolyl-tRNA synthetase [Escherichia coli F11]
 gi|215263428|emb|CAS07748.1| prolyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|218363905|emb|CAR01570.1| prolyl-tRNA synthetase [Escherichia coli S88]
 gi|218425634|emb|CAR06420.1| prolyl-tRNA synthetase [Escherichia coli ED1a]
 gi|222032025|emb|CAP74764.1| Prolyl-tRNA synthetase [Escherichia coli LF82]
 gi|227838141|gb|EEJ48607.1| proline--tRNA ligase [Escherichia coli 83972]
 gi|294489624|gb|ADE88380.1| prolyl-tRNA synthetase [Escherichia coli IHE3034]
 gi|300301388|gb|EFJ57773.1| prolyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|300305742|gb|EFJ60262.1| prolyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|300409810|gb|EFJ93348.1| prolyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|307552047|gb|ADN44822.1| prolyl-tRNA synthetase [Escherichia coli ABU 83972]
 gi|307629771|gb|ADN74075.1| prolyl-tRNA synthetase [Escherichia coli UM146]
 gi|312944803|gb|ADR25630.1| prolyl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315285273|gb|EFU44718.1| prolyl-tRNA synthetase [Escherichia coli MS 110-3]
 gi|315295532|gb|EFU54858.1| prolyl-tRNA synthetase [Escherichia coli MS 153-1]
 gi|315300667|gb|EFU59894.1| prolyl-tRNA synthetase [Escherichia coli MS 16-3]
 gi|323950806|gb|EGB46683.1| prolyl-tRNA synthetase [Escherichia coli H252]
 gi|323955077|gb|EGB50853.1| prolyl-tRNA synthetase [Escherichia coli H263]
 gi|324008226|gb|EGB77445.1| prolyl-tRNA synthetase [Escherichia coli MS 57-2]
 gi|324014120|gb|EGB83339.1| prolyl-tRNA synthetase [Escherichia coli MS 60-1]
 gi|324112394|gb|EGC06371.1| prolyl-tRNA synthetase [Escherichia fergusonii B253]
 gi|325496126|gb|EGC93985.1| prolyl-tRNA synthetase [Escherichia fergusonii ECD227]
 gi|331052308|gb|EGI24347.1| proline--tRNA ligase [Escherichia coli TA206]
 gi|331081801|gb|EGI52962.1| proline--tRNA ligase [Escherichia coli H299]
          Length = 572

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 113/187 (60%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++++
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVD 564

Query: 437 YASHRFS 443
           Y   +  
Sbjct: 565 YLVKQIK 571


>gi|315648987|ref|ZP_07902081.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315275668|gb|EFU39022.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 645

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 169/442 (38%), Gaps = 37/442 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L + T       +G+  WLP G K    +   I + + R G 
Sbjct: 235 LHLLEEAKKRDHRKLGKELQMFT-FSQLVGQGLPIWLPNGAKLRRTLERYIVDMEERLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + +L+  SG ++ Y ++M    + +++ ++  P +      +++S + SYR
Sbjct: 294 QHVYTPVLGNVELYKTSGHWEHYQEDMFPKMEMDNEELVLRPMNCPHHMMVYKSDMHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ ++ R E+     G+ R R   + D++ F   P+  K  + ++    + ++
Sbjct: 354 DLPIRIAELGMQHRYEMSGALTGLHRVRAMTLNDSHIFCR-PDQIKEEFARVIQLIMTVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS-KDFMDFPIPSENTDFDDIIS 244
              G+     R                  D  +T+ +    +  +          + +  
Sbjct: 413 KDFGIHDYRFRLS--------------YRDPQDTEKYFQNDEMWEMSQRMLREVVESLDM 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  +L + + +S   ++    F    ++       + G
Sbjct: 459 PFYEAEGEAAFYGPKLDV---QIRTALGKEETLSTVQLD----FLLPERF----ELEYVG 507

Query: 305 ADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H   +   GI G M    A +  +  G   +W   V    I + N         D
Sbjct: 508 DDGQKHRPVVIHRGILGTMERFTAFLLENFAGALPLWLSPVQVKVIPVSN------AFED 561

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G  V  D   E++G +   A L   P   IVG    +   V ++ R  
Sbjct: 562 YAKEVAEKLQFAGISVEPDLRNEKLGYKIREAQLEKIPYMFIVGENEKNAGAVSVRKRGE 621

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G     SL+++I       + +
Sbjct: 622 GDIGAQSLDDIILKLREEINTH 643


>gi|284045075|ref|YP_003395415.1| threonyl-tRNA synthetase [Conexibacter woesei DSM 14684]
 gi|283949296|gb|ADB52040.1| threonyl-tRNA synthetase [Conexibacter woesei DSM 14684]
          Length = 643

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 144/439 (32%), Gaps = 41/439 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      +L L        S G   WLP G    +++ A  RE     G  E
Sbjct: 242 RLEEAKKRDHRRLGRELKLFQ--FSAVSPGSAFWLPRGTSLWNSLVAFTREMNEPRGYQE 299

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +  ++LW  SG +D Y + M  +    D+ +   P +      +FRS   SYR L
Sbjct: 300 VKTPLIFDSELWRTSGHWDKYRENMF-VTHAEDRDLAVKPMNCPGHAHLFRSQRHSYREL 358

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  + +  L  R+E      G+MR R F   DA+ F    +                  R
Sbjct: 359 PVRYSEPGLLHRNEPSGTLHGLMRVRHFAQDDAHIFCTEEQVHGEVVAC-LDLIFDTLGR 417

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G + I +   + P     + E                   D          +       
Sbjct: 418 FGFE-IDVELSTRPERRIGTDE-----------------MWDRAEGKLRAALEQQGLRYR 459

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           + E   A Y    D H   + DS+  + ++    ++                 T+ GAD 
Sbjct: 460 VNEGDGAFYGPKIDFH---VTDSIGRSWQLGTVQLDYSFP--------ERFELTYVGADD 508

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           ++H    +    +G+      ++     G+  +W   V    + +           D   
Sbjct: 509 REHRPVMIHRAAMGSYERFIGMLIEHWAGEFPVWLAPVQAIVLPIA------DRHADYAR 562

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + A+L      V  DD  E +G +   A+L   P  +++G +     +V ++    G  
Sbjct: 563 DVVAQLRAARVRVELDDRTESVGRKIRDAELQKIPYMLVIGDREREAGEVALRRHREGDE 622

Query: 427 EDMSLEEVINYASHRFSNN 445
             + + E +          
Sbjct: 623 GSLPVAEFVARVVSETEQR 641


>gi|323698513|ref|ZP_08110425.1| threonyl-tRNA synthetase [Desulfovibrio sp. ND132]
 gi|323458445|gb|EGB14310.1| threonyl-tRNA synthetase [Desulfovibrio desulfuricans ND132]
          Length = 645

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 158/440 (35%), Gaps = 40/440 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L +    +   G+  W P G      +    R+E  
Sbjct: 227 LKQYLNRLEEAKKRDHRKLGKQLDLFS-FSDEVGPGMSLWHPRGMLLRAILEDFERKEHL 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +   +LW +SG YD+Y + M    + +++A    P +      I++  I
Sbjct: 286 KRGYDLVQGPIILKRELWEKSGHYDNYRENM-YFTEIDEQAYGIKPMNCLAHMIIYKRKI 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  ++++ +  R E      G+MR R F   DA+     P+  +     +   Y
Sbjct: 345 MSYRDLPQRYFELGVVHRHEKSGVLHGLMRVRTFTQDDAHLICR-PDQVEEEILNLIKFY 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                               I    ++EF V   T   +   + +  +          D 
Sbjct: 404 K------------------DIYALFNYEFDVELSTRPAKSIGTDEDWELATEGLRQALDK 445

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +I E   A Y    D H   L DS+  + +     ++    F    ++       
Sbjct: 446 SGMPYAINEGDGAFYGPKIDFH---LRDSIGRSWQCGTIQVD----FTLPERFD----IV 494

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H    +    +G++     V+    +     +P  +AP +  L+N+      
Sbjct: 495 YVGEDGERHRPVMIHRAMLGSIERFIGVLT---EHCAGAYPVWLAPVQARLLNVTDAQLD 551

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                E   A L   G  V  D   E++G +   A +   P  +++G K V    V I+ 
Sbjct: 552 FMKKAE---AFLVSKGIRVEADTRNEKLGYKIREAQVEKVPYMLVIGDKEVEAGCVNIRS 608

Query: 421 RLTGIREDMSLEEVINYASH 440
           R       ++LEE       
Sbjct: 609 RDGEDPGMVTLEEAAQLILE 628


>gi|315026573|gb|EFT38505.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2137]
          Length = 660

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 246 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 303

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 304 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 363

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 364 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 423

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 424 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 470 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 518

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 519 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 575

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 576 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 635

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 636 SKETSVEDLSIFIDSMAAEVRNY 658


>gi|302380527|ref|ZP_07268992.1| threonine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|303234012|ref|ZP_07320661.1| threonine--tRNA ligase [Finegoldia magna BVS033A4]
 gi|302311470|gb|EFK93486.1| threonine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302494937|gb|EFL54694.1| threonine--tRNA ligase [Finegoldia magna BVS033A4]
          Length = 634

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 160/443 (36%), Gaps = 39/443 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L +  I +   G   + P G   L+ +   ++E+    
Sbjct: 230 EYLDRMEEAKKRDHRKIGKEMGLFS--IQEEGPGFPFFHPNGMVVLNELEKFLKEQLLER 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  ++  P + +  LW +SG +D Y + M      + +     P +      +++  + S
Sbjct: 288 GYGQIKTPLILNEHLWHQSGHWDHYKENM-YFTKIDGEDYAIKPMNCPGSILVYKDELHS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++    R EL     G+ R R F+  DA+ F L  +      +K+      
Sbjct: 347 YRELPIKVAELGQVHRHELSGALHGLFRVRTFVQDDAHVFCLPEQIEDE-VSKIIDFCDY 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I+ + G K   +   + P     S E                   D  I S     +   
Sbjct: 406 IYSKFGFKYE-VELSTRPEDSMGSDE-----------------DWDLAISSLKNALEHKG 447

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D H E   D++    +     ++    F    ++ +   A+  
Sbjct: 448 LPYKINEGDGAFYGPKIDFHLE---DAIGRTWQCGTIQLD----FQMPERFDMTYIAS-- 498

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               K     +    +G+      ++    +     +P  ++P ++ ++ I        D
Sbjct: 499 -DGSKKRPAMIHRAILGSEERFMGILI---EHYAGKFPLWLSPVQVEILPISDK---FND 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  ++   G  V  DD  E+IG +   + L      +I+G   + +++V ++ R  
Sbjct: 552 YAYELQQKMKARGLRVKVDDRSEKIGLKIRESQLKKVNYSLIIGQNEIDNNEVSVRKRDI 611

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
           G     + +E IN     + N +
Sbjct: 612 GDVGSKNTDEFINELVDEYQNRK 634


>gi|229169303|ref|ZP_04297013.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228614066|gb|EEK71181.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
          Length = 645

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 168/433 (38%), Gaps = 30/433 (6%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             GL++   R             +   ADT   + +   +  +          D++    
Sbjct: 416 DFGLENYSFRLS-----------YRDPADTK--KYYADDEMWEKAQGMLKEAMDEMGLDY 462

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+ G D
Sbjct: 463 YEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELTYVGED 511

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK H   +     G +  +   +    +     +P  +AP +  +I +    QV  D  +
Sbjct: 512 GKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQAQVIPVSP--QVHLDYAK 567

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++       
Sbjct: 568 KVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQKS 627

Query: 427 EDMSLEEVINYAS 439
           E ++L+  ++   
Sbjct: 628 ETIALDAFVDMIK 640


>gi|261338808|ref|ZP_05966666.1| hypothetical protein ENTCAN_05003 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318631|gb|EFC57569.1| proline--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
          Length = 572

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 167/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+KM+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDS-SDYAANIE 234



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  G KYS  M+A  +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGQGTLMIKRGIEVGHIFQLGDKYSRAMNAAVQGEDGRNQVLTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+YA L  
Sbjct: 443 CYGIGVTRVVAAAIEQNFDERGIVWPDNIAPFQVAILPMNMHKSYRVQELAEKLYAELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R +G ++ +   ++
Sbjct: 503 QGVDVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDSDEIEYKYRRSGEKQMIKTGDI 562

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 563 LDYLMKAIK 571


>gi|73542636|ref|YP_297156.1| prolyl-tRNA synthetase [Ralstonia eutropha JMP134]
 gi|114152236|sp|Q46X21|SYP_RALEJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|72120049|gb|AAZ62312.1| Prolyl-tRNA synthetase, bacterial [Ralstonia eutropha JMP134]
          Length = 573

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 130/278 (46%), Positives = 175/278 (62%), Gaps = 5/278 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYNYMPVGLRVIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+S+P +Q A+LW E+GR+D  G E+LRL DR+++     PT EEV+TDI RS
Sbjct: 61  MNRAGAVELSMPVIQPAELWQETGRWDKMGPELLRLKDRHERDFAVQPTSEEVVTDIARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY  M+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAEGLKKSYENMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y+RIF R GL+   + A++G IGG  SHEF V+ADTGE  +       D+    E  +  
Sbjct: 181 YVRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYCPT-SDYAANMEAAEAL 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
               +  +    +E+   P     +   E L   L  N
Sbjct: 240 PLVAERAAPTQALEKTFTPEKVKCEQVAEFLGIPLERN 277



 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/193 (35%), Positives = 108/193 (55%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K      RGIEVGH+F  GT+YS  M+ATF   +GK   +
Sbjct: 381 PEPIVADLRNVVAGDASPDGKGTLEICRGIEVGHVFMLGTRYSESMNATFLDENGKTQPM 440

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  R++ A IE + D +GIIWP ++APF++ +  +     +  +   ++I+A 
Sbjct: 441 QMGCYGIGVTRILGAAIEQNFDERGIIWPAAIAPFEVVVCPVGYDRSEAVKAEADRIHAE 500

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G  FA  +L+G P +V+VG + + + KVE + R       +++
Sbjct: 501 LLAAGVDVIIDDRGERPGVMFADWELIGVPHRVVVGDRGLKEGKVEYQGRRDAQATQVAV 560

Query: 432 EEVINYASHRFSN 444
            +V+ +   +   
Sbjct: 561 ADVVGHVRGQIGK 573


>gi|311280836|ref|YP_003943067.1| prolyl-tRNA synthetase [Enterobacter cloacae SCF1]
 gi|308750031|gb|ADO49783.1| prolyl-tRNA synthetase [Enterobacter cloacae SCF1]
          Length = 572

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDT-SDYAANIE 234



 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 69/189 (36%), Positives = 112/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  M+A  +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGQGTLMIKRGIEVGHIFQLGTKYSQAMNAAVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+YA L  
Sbjct: 443 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  V++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTVVIGDRNLDNDDIEYKYRRNGDKQLIKTGDI 562

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 563 LDYLVKAIK 571


>gi|225013012|ref|ZP_03703428.1| threonyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
 gi|225002828|gb|EEG40808.1| threonyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
          Length = 648

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 162/448 (36%), Gaps = 38/448 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L T    +  +G+  WLP G    + +   ++  QN
Sbjct: 228 LTEYLELVEEAKKRDHRKLGKELELFT-FSQKVGQGLPLWLPKGAALRERLENFLKAAQN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRS 120
           + G  ++  P + S +L++ SG Y+ YG +  +        +  +  P +     +I+ +
Sbjct: 287 KAGYEQVISPHIGSKELYMTSGHYEKYGADSFQPIQTPAEGEEFLLKPMNCPHHCEIYNA 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  + +    +R E      G+ R R F   DA+ F + P      + K+  
Sbjct: 347 KPWSYRDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCM-PSQLDDEFKKVID 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG ++   +                  D  + + +               + 
Sbjct: 406 LVLYVFGSLGFENFTAQVSLR--------------DPEKPEKYIGSTHNWELAEQAIINA 451

Query: 240 DDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
               +L+ ++E    A Y    D     + D+L    ++    ++               
Sbjct: 452 AKEKNLDYVIETGEAAFYGPKLDFM---VKDALGRKWQLGTIQVDYNLP--------ERF 500

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +KG+D + H    +     G++    A++     G   +W         + +NI   
Sbjct: 501 DLNYKGSDNELHRPVMIHRAPFGSLERFVAILLEHTGGNFPLW------LMPNQVNILCV 554

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            + C++   K+   L         DD  E IG +   +++   P  +I+G K   +  V 
Sbjct: 555 SEKCKNYALKVSNFLENHEIRALLDDRNETIGKKIRESEISKVPYMIIIGEKEEENQTVS 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++    G     S E V+   +    ++
Sbjct: 615 LRKHSEGDLGSFSTESVVELINTEIKSS 642


>gi|163942310|ref|YP_001647194.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|229013779|ref|ZP_04170907.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|229062260|ref|ZP_04199581.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
 gi|229135411|ref|ZP_04264199.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|163864507|gb|ABY45566.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|228648054|gb|EEL04101.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|228716988|gb|EEL68669.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
 gi|228747448|gb|EEL97323.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 645

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 168/433 (38%), Gaps = 30/433 (6%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             GL++   R             +   ADT   + +   +  +          D++    
Sbjct: 416 DFGLENYSFRLS-----------YRDPADTK--KYYADDEMWEKAQGMLKEAMDEMGLDY 462

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+ G D
Sbjct: 463 YEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELTYVGED 511

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK H   +     G +  +   +    +     +P  +AP +  +I +    QV  D  +
Sbjct: 512 GKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQAQVIPVSP--QVHLDYAK 567

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++       
Sbjct: 568 KVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQKS 627

Query: 427 EDMSLEEVINYAS 439
           E ++L+  ++   
Sbjct: 628 ETIALDAFVDMIK 640


>gi|317484633|ref|ZP_07943536.1| prolyl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
 gi|316924107|gb|EFV45290.1| prolyl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
          Length = 574

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 129/264 (48%), Positives = 174/264 (65%), Gaps = 3/264 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++++P L+E P DAE+ SHKL++R GMI + + GIY+WLPLG + L+    I+REE
Sbjct: 1   MRWSQWYIPTLKEAPGDAEVISHKLLIRAGMIRKLTSGIYTWLPLGLRTLNKAANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +PT+Q ADLW ESGR++ YGKE+LR  DR+++    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGAQEILMPTVQPADLWRESGRWEHYGKELLRFKDRHERDYCLGPTHEEVVTDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REFLMKDAYSFD    G+  SY KMF +
Sbjct: 121 EVRSYRQLPMNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDRDDAGADISYKKMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+ L+  P+ A+SG IGG+ SHEF+VLA+TGE  +                   
Sbjct: 181 YKKIFSRMALQFRPVEADSGSIGGNFSHEFMVLAETGEDTIAYCTGCDWSANIERAAVLP 240

Query: 241 DIISLNSI---VEQWTAPYAATSD 261
              +       +E+ T P   T +
Sbjct: 241 PAKACEETCSAIEEVTTPDQHTIE 264



 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/188 (37%), Positives = 110/188 (58%), Gaps = 2/188 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +   P  A +D+ +    D  P   +    A+GIEVGH+F  GTKYS  ++A +   +GK
Sbjct: 372 KRDVPAFAYADLRSIAEGDVCPRCGKPVAFAKGIEVGHVFKLGTKYSTALNAIYLDENGK 431

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +  + MG YGIG  RVVAA IE ++DG GI +P  +APF + L+N+   +       +++
Sbjct: 432 EQTIIMGCYGIGVSRVVAACIEQNNDGDGIAFPPPLAPFDLELLNLDPKNADTAAKADEL 491

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L+ +G DV  DD  E+ G +F  ADL+G P+QV+VG K ++   VE+K+R TG + +
Sbjct: 492 YDLLTGMGLDVLLDDREERPGVKFKDADLVGLPMQVVVGGKGLARGIVEVKNRKTGEKGE 551

Query: 429 MSLEEVIN 436
           + +E    
Sbjct: 552 LPVEGFAE 559


>gi|283779278|ref|YP_003370033.1| threonyl-tRNA synthetase [Pirellula staleyi DSM 6068]
 gi|283437731|gb|ADB16173.1| threonyl-tRNA synthetase [Pirellula staleyi DSM 6068]
          Length = 666

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 145/443 (32%), Gaps = 38/443 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            I +   RD  +   +L L T  I+     G+  WLP G      + + +REE  R G  
Sbjct: 237 KIEEAKRRDHRLLGKQLDLFT--INPLVGSGLILWLPKGATIRGLLESFVREELIRRGYQ 294

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            +  P +   DL+  SG +  Y   M      + ++  +  P +      I++S  +SYR
Sbjct: 295 TVYTPHIGKVDLYRTSGHFPYYADSMFPPFVTKEEEEYLLKPMNCPHHIMIYKSKPRSYR 354

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    +     R E   +  G+ R R F   DA+ F    +     +         + 
Sbjct: 355 ELPLRLAEFGTVHRYEKSGQLSGMTRVRGFTQDDAHIFCTDEQVPGE-FEGCIEMTQFVL 413

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             LGL +  +R                  D    +   S++  +    +       +   
Sbjct: 414 KSLGLDNYRVRL--------------GFRDPKSDKYVGSEELWNRAQGALVEVCTRLGIE 459

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
            +  E   A Y   +D     + D +    ++    ++           +      + GA
Sbjct: 460 YTAEEGEAAFYGPKADF---VVTDCIGREWQLGTVQLDYNLP------SAERFDLEYVGA 510

Query: 306 DGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           D K H   M          R +  +IE       +      A             +    
Sbjct: 511 DNKIHRPVMIHRAPLGSMERFIGVLIEHFAGAFPLWLAPEQARVVTV-------SEKSEA 563

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E++G++   A L   P   +VG +      V ++ RL 
Sbjct: 564 YGREVEEKLRSAGFRVSGDYRSEKLGAKIRDAQLELIPYMFVVGPRDAEQGTVSLRDRLD 623

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
           G    +SL + +   S   +  +
Sbjct: 624 GDLGALSLADAMQRLSDEVAERK 646


>gi|298503373|ref|YP_003725313.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A]
 gi|298238968|gb|ADI70099.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A]
          Length = 660

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 156/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 242 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 299

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 300 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 359

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 360 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 419

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 420 IDVYEDFNLTDYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 466

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 467 MGVDYFEAEGEAAFYGPKLDI---QIKTALGKEETLSTIQLD----FLLPERFD----LK 515

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG+DH   M   G+ +       I   +         +     +    I   ++  
Sbjct: 516 YIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 571

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 572 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRY 631

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S++  +       +N 
Sbjct: 632 GQKETQTVSVDNFVQAILADIANK 655


>gi|50083997|ref|YP_045507.1| prolyl-tRNA synthetase [Acinetobacter sp. ADP1]
 gi|81827514|sp|Q6FE23|SYP_ACIAD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|49529973|emb|CAG67685.1| prolyl-tRNA synthetase [Acinetobacter sp. ADP1]
          Length = 570

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 126/237 (53%), Positives = 166/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L+ V AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGVRVLNKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY  YG E+LR  DR+D   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGALEVFMPVTQPASLWEESGRYVQYGPELLRFKDRHDNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+ +
Sbjct: 121 ELKSYKQLPINFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHVDQASLQETYDNMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF RLGL   P++A++G IGG  SHEF VLAD+GE  +       D+    E  
Sbjct: 181 YCRIFTRLGLDFRPVQADTGSIGGSGSHEFHVLADSGEDDIVF-STESDYAANVEKA 236



 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 106/192 (55%), Gaps = 3/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A ++   D+ N    D  P+ + V    RGIEVGHIF  G KYS  ++ T  G DGK
Sbjct: 379 ERDAKFSEIYDLRNVVDGDPSPDGQGVLQIKRGIEVGHIFQLGQKYSEALNCTVLGDDGK 438

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              V MG YGIG  RVVA+ IE ++D KGIIWP ++APF+I+++ + A       +A E 
Sbjct: 439 PLVVTMGCYGIGVTRVVASAIEQNYDDKGIIWPSAIAPFEIAIVPMNAHKSPKTLEAAEA 498

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA L   G DV  DD  E+ G +F+  +L G P ++++G K +     E K R      
Sbjct: 499 LYAELQAQGYDVLLDDRNERPGVKFSDLELTGIPHRIVIGEKGLDAGTFEYKGRTDAESV 558

Query: 428 DMSLEEVINYAS 439
           +++ +E++    
Sbjct: 559 NLTKDELLAKLK 570


>gi|228941754|ref|ZP_04104301.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228974678|ref|ZP_04135244.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981272|ref|ZP_04141572.1| Threonyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228778472|gb|EEM26739.1| Threonyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228785081|gb|EEM33094.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817966|gb|EEM64044.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326942359|gb|AEA18255.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 645

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 169/433 (39%), Gaps = 30/433 (6%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             GL++   R             +   ADT   + +   +  +          D++    
Sbjct: 416 DFGLENYSFRLS-----------YRDPADTK--KYYADDEMWEKAQGMLKEAMDEMGLDY 462

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+ G D
Sbjct: 463 YEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELTYVGED 511

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK H   +     G +  +   +    +     +P  +AP ++ +I +    QV  D  +
Sbjct: 512 GKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSP--QVHLDYAK 567

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++       
Sbjct: 568 KVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQKS 627

Query: 427 EDMSLEEVINYAS 439
           E ++L+  ++   
Sbjct: 628 ETIALDAFVDMIK 640


>gi|228967672|ref|ZP_04128693.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792048|gb|EEM39629.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 645

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 169/433 (39%), Gaps = 30/433 (6%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             GL++   R             +   ADT   + +   +  +          D++    
Sbjct: 416 DFGLENYSFRLS-----------YRDPADTK--KYYADDEMWEKAQGMLKEAMDEMGLDY 462

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+ G D
Sbjct: 463 YEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELTYVGED 511

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK H   +     G +  +   +    +     +P  +AP ++ +I +    QV  D  +
Sbjct: 512 GKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSP--QVHLDYAK 567

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++       
Sbjct: 568 KVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQKS 627

Query: 427 EDMSLEEVINYAS 439
           E ++L+  ++   
Sbjct: 628 ETIALDAFVDMIK 640


>gi|218899729|ref|YP_002448140.1| threonyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228903093|ref|ZP_04067229.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
 gi|228910399|ref|ZP_04074214.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|218543438|gb|ACK95832.1| threonyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228849165|gb|EEM94004.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|228856502|gb|EEN01026.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
          Length = 645

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 169/433 (39%), Gaps = 30/433 (6%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             GL++   R             +   ADT   + +   +  +          D++    
Sbjct: 416 DFGLENYSFRLS-----------YRDPADTK--KYYADDEMWEKAQGMLKEAMDEMGLDY 462

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+ G D
Sbjct: 463 YEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELTYVGED 511

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK H   +     G +  +   +    +     +P  +AP ++ +I +    QV  D  +
Sbjct: 512 GKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSP--QVHLDYAK 567

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++       
Sbjct: 568 KVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQKS 627

Query: 427 EDMSLEEVINYAS 439
           E ++L+  ++   
Sbjct: 628 ETIALDAFVDMIK 640


>gi|238918575|ref|YP_002932089.1| prolyl-tRNA synthetase [Edwardsiella ictaluri 93-146]
 gi|259511594|sp|C5B780|SYP_EDWI9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|238868143|gb|ACR67854.1| prolyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146]
          Length = 572

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 128/235 (54%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLNKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNYAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T E  + +Y  M+ +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQESLQETYEAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +       D+    E
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF-STASDYAANIE 234



 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 121/206 (58%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +  A     +D+ N    D  P+ K   +  RGIEVGHIF  GTKY+  +
Sbjct: 366 DGKHYFGINWERDAALPQIADIRNVIEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYTEAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +AT +G DG++  + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 NATVQGEDGRNQLMTMGCYGIGVTRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++Y  L   G +V  DD  E+ G  FA  +L+G P  +++G + + ++++E
Sbjct: 486 SFRVKEVAERLYDGLRAKGIEVLLDDRKERPGVMFADMELIGIPHTIVIGDRNLDNNEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +S++E+  +   + +
Sbjct: 546 YKYRRSGDKLMISVDEIEAFLQAQIA 571


>gi|119505276|ref|ZP_01627351.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2080]
 gi|119458967|gb|EAW40067.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2080]
          Length = 639

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 146/433 (33%), Gaps = 40/433 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD    + KL L      + + G+  W P G      + + +R++Q R  
Sbjct: 231 YLNRIAEAEKRDHRKIAKKLDLF--HTQEEAPGMVFWHPAGWTIYQVIESYMRKQQLRFD 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG  D +   M  L D +D+     P +      +F   +KSY
Sbjct: 289 YEEIKTPQVVDISLWQRSGHADKFASGMFTL-DADDRQFAVKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T    +            +
Sbjct: 348 RDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEAQIQSEVATFIDMLHEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   +  R  + P                      S+   D    +     D    
Sbjct: 407 YADFGFTEVIYRLSTRPAER-----------------VGSETDWDRAEAALAEALDAKDL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              ++    A Y    +     L D +    ++    ++                A +  
Sbjct: 450 NWEMLPGEGAFYGPKIEF---SLKDCIGRVWQLGTIQVDFSMPGRLD--------AQYVA 498

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG     V +    +G+      ++   ++G+  +W  S       +  I         
Sbjct: 499 EDGSRQVPVMLHRAVLGSFERFIGILIEHYEGEFPLWLASQQAI---VAPITDK---QGA 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++ A L + G  V  D   E+IG +    +L   PL ++VG K ++   V ++ R  
Sbjct: 553 YAQQVAADLKEAGFRVGTDLRNEKIGFKIREHELAKVPLVLVVGDKEMAAGTVAVRGRHG 612

Query: 424 GIREDMSLEEVIN 436
                ++L  ++ 
Sbjct: 613 ADLGSLNLAALMQ 625


>gi|225857248|ref|YP_002738759.1| threonyl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|254783542|sp|C1CLX1|SYT_STRZP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225725171|gb|ACO21023.1| threonyl-tRNA synthetase [Streptococcus pneumoniae P1031]
          Length = 647

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 155/443 (34%), Gaps = 31/443 (6%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L + +E   RD      +L L   +  +  +G+  WLP G      +   I  ++  
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLFI-ISQEVGQGLPFWLPNGATIRRELERYIVNKELA 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHI 122
           +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H+
Sbjct: 288 SGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHHV 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     +
Sbjct: 348 HSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLII 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    L     R            +     D  E          +          D++
Sbjct: 408 DVYEDFNLTDYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDEM 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    D+   ++  +L + + +S   ++    F    ++       +
Sbjct: 455 GVNYFEAEGEAAFYGPKLDI---QIKTALGKEETLSTIQLD----FLLPERFD----LKY 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            GADG+DH   M   G+ +       I   +         +     +    I   ++   
Sbjct: 504 IGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKHV 559

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++   
Sbjct: 560 DYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRYG 619

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
               + +S++  +       +N 
Sbjct: 620 QKETQTVSVDNFVQAILADIANK 642


>gi|168493529|ref|ZP_02717672.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|183576436|gb|EDT96964.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
          Length = 647

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 156/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELEHYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTDYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QIKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG+DH   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S++  +       +N 
Sbjct: 619 GQKETQTVSVDNFVQAILADIANK 642


>gi|150018038|ref|YP_001310292.1| threonyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|149904503|gb|ABR35336.1| threonyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 635

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/440 (19%), Positives = 158/440 (35%), Gaps = 39/440 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L T    +   G    LP G    + +    R+     G 
Sbjct: 232 LHNLEEAKKRDHRKLGKELKLFT--FAEEGPGFPFMLPKGVILKNTLIDFWRKLHYEDGY 289

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +E+  P + +  LW  SG +  Y + M   +  +++     P +      +++S   SYR
Sbjct: 290 VEIETPIMLNKKLWETSGHWYHYRENMYTSS-IDEEEFALKPMNCPGGMLVYKSESHSYR 348

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + P    ++    R EL     G+MR R F   DA+ F L  +        +     +++
Sbjct: 349 DFPMRVGELGRVHRHELSGALHGLMRVRAFTQDDAHIFMLPDQIKSE-IKGVINLIDKVY 407

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
            + G K   +   + P     S E                   +    S     D++   
Sbjct: 408 SKFGFKYN-LELSTRPEDSMGSDE-----------------EWELAESSLKGALDELNLE 449

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    D H E   DS+    +     ++    F    ++       + G+
Sbjct: 450 YKINEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQLPQRF----ELEYVGS 498

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DG+ H   +    +     +   I    +     +P  ++P ++ ++ I           
Sbjct: 499 DGEKHRPIVIHRVV--FGSIERFIGILIEHFAGKFPTWLSPVQVKILPISNK---FNSYS 553

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           EKI  +LS  G  V  D   E+IG +   A     P  +IVG K  +++ + ++ R  G 
Sbjct: 554 EKIKDKLSSEGIRVEIDQKDEKIGYKIREARNERVPYIIIVGEKEAAENNISLRSRSNGD 613

Query: 426 REDMSLEEVINYASHRFSNN 445
              ++LE++I   ++   N 
Sbjct: 614 EGTLNLEDLIERINNEVKNK 633


>gi|22125796|ref|NP_669219.1| threonyl-tRNA synthetase [Yersinia pestis KIM 10]
 gi|45442011|ref|NP_993550.1| threonyl-tRNA synthetase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596666|ref|YP_070857.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|108807773|ref|YP_651689.1| threonyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|108812050|ref|YP_647817.1| threonyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|145598020|ref|YP_001162096.1| threonyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149365658|ref|ZP_01887693.1| threonyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|153950233|ref|YP_001400689.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|162420291|ref|YP_001607032.1| threonyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165927513|ref|ZP_02223345.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939479|ref|ZP_02228025.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011794|ref|ZP_02232692.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166210452|ref|ZP_02236487.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400748|ref|ZP_02306254.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167424849|ref|ZP_02316602.1| threonyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170024059|ref|YP_001720564.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186895722|ref|YP_001872834.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|218929522|ref|YP_002347397.1| threonyl-tRNA synthetase [Yersinia pestis CO92]
 gi|229837960|ref|ZP_04458119.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895121|ref|ZP_04510297.1| threonyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|229898521|ref|ZP_04513666.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902362|ref|ZP_04517482.1| threonyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|270490458|ref|ZP_06207532.1| threonine--tRNA ligase [Yersinia pestis KIM D27]
 gi|294503566|ref|YP_003567628.1| threonyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|22654122|sp|Q8ZDW5|SYT_YERPE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73919846|sp|Q669Z0|SYT_YERPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122979581|sp|Q1C728|SYT_YERPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122980145|sp|Q1CIG3|SYT_YERPN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225518|sp|A4TIL1|SYT_YERPP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166987327|sp|A7FHG1|SYT_YERP3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238687259|sp|A9R0A8|SYT_YERPG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238688418|sp|B1JJ17|SYT_YERPY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238691408|sp|B2K668|SYT_YERPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21958722|gb|AAM85470.1|AE013793_6 threonine tRNA synthetase [Yersinia pestis KIM 10]
 gi|45436874|gb|AAS62427.1| threonyl-tRNA synthetase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51589948|emb|CAH21580.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|108775698|gb|ABG18217.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Yersinia pestis
           Nepal516]
 gi|108779686|gb|ABG13744.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Yersinia pestis
           Antiqua]
 gi|115348133|emb|CAL21061.1| threonyl-tRNA synthetase [Yersinia pestis CO92]
 gi|145209716|gb|ABP39123.1| threonyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149292071|gb|EDM42145.1| threonyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|152961728|gb|ABS49189.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|162353106|gb|ABX87054.1| threonyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165912528|gb|EDR31159.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165920568|gb|EDR37845.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989259|gb|EDR41560.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207632|gb|EDR52112.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167049601|gb|EDR61009.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056036|gb|EDR65814.1| threonyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169750593|gb|ACA68111.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186698748|gb|ACC89377.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|229680697|gb|EEO76793.1| threonyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|229688069|gb|EEO80140.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694326|gb|EEO84373.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701883|gb|EEO89906.1| threonyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|262361608|gb|ACY58329.1| threonyl-tRNA synthetase [Yersinia pestis D106004]
 gi|262365651|gb|ACY62208.1| threonyl-tRNA synthetase [Yersinia pestis D182038]
 gi|270338962|gb|EFA49739.1| threonine--tRNA ligase [Yersinia pestis KIM D27]
 gi|294354025|gb|ADE64366.1| threonyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|320015090|gb|ADV98661.1| threonyl-tRNA synthetase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 642

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHVFCTEEQVRDE-VNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+                         +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDELWTRAED-----------------DLAAALTENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    + S    A++ G
Sbjct: 451 PFDYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----ASYIG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G+M     ++   + G    W   V    +++           D
Sbjct: 500 ENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTWLAPVQVVVMNIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R  
Sbjct: 554 YVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + +  V++       + 
Sbjct: 614 KDLGSLDVNVVVDQLLAEIRSR 635


>gi|302387069|ref|YP_003822891.1| threonyl-tRNA synthetase [Clostridium saccharolyticum WM1]
 gi|302197697|gb|ADL05268.1| threonyl-tRNA synthetase [Clostridium saccharolyticum WM1]
          Length = 629

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/438 (18%), Positives = 152/438 (34%), Gaps = 41/438 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L T M      G   +LP G    + +    R+   R 
Sbjct: 229 EYLTRMEEAKKRDHRKLGKELGLFTLM--DEGPGFPFFLPKGMILKNLLIDYWRKIHERE 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             +E+S P + S  LW  SG +D Y   M      +++     P +      +++S   S
Sbjct: 287 RYVEISTPMMLSRKLWETSGHWDHYKDNMYT-TKIDEEDFAIKPMNCPGGLLVYKSVPHS 345

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++ L  R E      G+MR R F   DA+ +    + +      + +    
Sbjct: 346 YRELPIRMGELGLVHRHEKSGALHGLMRVRCFTQDDAHIYMTQEQITDEIKGVVRLI--- 402

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                             +      ++ V   T       S+   +          D++ 
Sbjct: 403 ----------------DEVYSKFGFKYHVELSTKPENSIGSEADWEIATCGLRKALDELQ 446

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H E   DS+    +     ++    F    ++     A + 
Sbjct: 447 MNYVVNEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQLPQRF----EAEYI 495

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG+ H    +     G++     ++     GK  +W   V    + +       +   
Sbjct: 496 GADGEKHRPIMIHRVVFGSIERFIGILIEHFAGKFPVWLAPVQIKILPI------SEKFS 549

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  +L K       D+  E+IG +   A L   P  +I+G K      + ++ R 
Sbjct: 550 TYSKEVLMKLKKADIRCEMDERDEKIGYKIREAQLEKVPYMLILGEKEAETGMLSVRSRE 609

Query: 423 TGIREDMSLEEVINYASH 440
            G    MS+E++I+    
Sbjct: 610 QGDIGIMSIEKIIDLIKS 627


>gi|225619668|ref|YP_002720925.1| threonyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
 gi|225214487|gb|ACN83221.1| threonyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
          Length = 643

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 92/442 (20%), Positives = 167/442 (37%), Gaps = 39/442 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      +L L +   H    G   W P G      V + IR E ++ G
Sbjct: 229 YLKKLKEAKERDHRKLGKELNLFS--FHDEGPGFPFWHPRGMIIYKAVESYIRNENDKRG 286

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P + + +LW  SG +D+Y + M    + ++      P +      ++ S+I SY
Sbjct: 287 YVEIKTPAILNEELWHRSGHWDNYKENM-YFTEIDETKYAVKPMNCPGGLIVYNSNIHSY 345

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++    R EL     G+ R R F   DA+ F    +            YL +
Sbjct: 346 RDLPLRVAELGFVHRHELSGALHGLFRVRAFTQDDAHIFCTEEQLGDE-IINTIEYYLSV 404

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G ++  +   + P     S E                   +    S     D +  
Sbjct: 405 YKDFGFENFEIFVSTRPAKSIGSDE-----------------IWELATKSLINALDKLKI 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D     + D L  N +     ++    F    ++      +++G
Sbjct: 448 SYKINEGDGAFYGPKIDF---NIKDVLDRNWQCGTLQVD----FSLPMRF----EISYEG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGK H    +    +G+M     ++   ++GK  +W   +    ++++    +++   D
Sbjct: 497 KDGKKHTPVMLHRAILGSMERFIGILVEHYNGKFPLWLSPLQVAVVNVL----NEKPQID 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G  V  D+  + +G++     L   P  VI+G++ VS  K+ I+ R +
Sbjct: 553 RTNEVAKALKDAGFRVEVDESNDNLGTKIKKYRLQRTPYTVIIGAEEVSSGKLSIRTRSS 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              +DM L E I          
Sbjct: 613 QEIKDMDLNEFIEKLKKESKER 634


>gi|288937023|ref|YP_003441082.1| prolyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|288891732|gb|ADC60050.1| prolyl-tRNA synthetase [Klebsiella variicola At-22]
          Length = 572

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDS-SDYAANIE 234



 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 110/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M+A  +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSQAMNAAVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GIIWPD++APF+++++ +  H     ++  EK+YA L  
Sbjct: 443 CYGIGVTRVVAAAIEQNFDDRGIIWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 HGIDVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           + Y      
Sbjct: 563 VEYLVKAIK 571


>gi|206579512|ref|YP_002240318.1| prolyl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|226701300|sp|B5Y1H7|SYP_KLEP3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|206568570|gb|ACI10346.1| prolyl-tRNA synthetase [Klebsiella pneumoniae 342]
          Length = 572

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDS-SDYAANIE 234



 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 110/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M+A  +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSQAMNAAVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GIIWPD++APF+++++ +  H     ++  EK+YA L  
Sbjct: 443 CYGIGVTRVVAAAIEQNFDDRGIIWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 HGIDVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           + Y      
Sbjct: 563 VEYLVKAIK 571


>gi|119470323|ref|ZP_01613082.1| prolyl-tRNA synthetase [Alteromonadales bacterium TW-7]
 gi|119446495|gb|EAW27770.1| prolyl-tRNA synthetase [Alteromonadales bacterium TW-7]
          Length = 574

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 122/237 (51%), Positives = 159/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYILATLKETPSDAEIVSHQLMLRAGMIRRVASGLYTWLPSGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GAIEM +P +Q ADLW ESGR+  +G E++R  DR+++    GPTHEEV+TD  R 
Sbjct: 61  MDKAGAIEMLMPVIQPADLWEESGRWSEFGPELMRFTDRHNREFALGPTHEEVITDFVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T YQ+Q K RDE RPRFGVMR+REF MKDAYSF L+ E   ++Y  M  +
Sbjct: 121 EVNSYKQLPLTLYQVQTKVRDERRPRFGVMRAREFTMKDAYSFHLSEECLNNTYQAMHKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGL   P+ A++G IGG +SHEF VLA++GE  +  S    D+    E  
Sbjct: 181 YCNIFERLGLDYRPVIADTGSIGGSVSHEFHVLAESGEDAIAFSD-GSDYAANIEKA 236



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 3/184 (1%)

Query: 259 TSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D     +      RG+EVGHIF  GTKYS  M A     DGK+  + MG 
Sbjct: 386 VADIRNIVEGDPSPCGQGTLQIKRGVEVGHIFQLGTKYSEAMKAGVLNEDGKNQVMTMGC 445

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKV 375
           YG+G  R+VAA IE ++D  GIIWP S+APF ++++ +         D    +Y  L   
Sbjct: 446 YGVGVSRIVAAAIEQNNDKYGIIWPQSIAPFDLAIVPMNMHKSHRIPDIANSLYQGLKDA 505

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV +DD  E+ G  F   +L+G P  +++G + + ++KVE+K+R TG +  + ++  I
Sbjct: 506 GVDVLFDDRKERPGVMFNDMELVGVPFTLVIGERNLDENKVELKNRRTGEKLMIDIDTAI 565

Query: 436 NYAS 439
               
Sbjct: 566 ESIK 569


>gi|90020556|ref|YP_526383.1| Pectate lyase/Amb allergen [Saccharophagus degradans 2-40]
 gi|114152247|sp|Q21MA8|SYP_SACD2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|89950156|gb|ABD80171.1| prolyl-tRNA synthetase [Saccharophagus degradans 2-40]
          Length = 575

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY +   +E P DAE+ SH+LMLR G+I + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRASKYLIATYKETPADAEVISHQLMLRAGLIRKLASGLYNWLPAGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q A+LW ESGR+  YG E+LR+ DR+D+A   GPTHEEV+TD+ R+
Sbjct: 61  MDRAGAQEVLMPVVQPAELWEESGRWQQYGPELLRINDRHDRAFCLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF  + E  + +Y+ M  +
Sbjct: 121 ELKSYKQLPANFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHASQECLQETYDIMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL   P+ A++G IGG  SHEF VLAD+GE  +       +F    E
Sbjct: 181 YCKIFDRIGLDYRPVLADTGSIGGTGSHEFHVLADSGEDDIAF-STESNFAANVE 234



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 115/212 (54%), Gaps = 4/212 (1%)

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSL 296
            +      +      A      D+ N  + D  P  K      RGIEVGHIF  GTKYS 
Sbjct: 364 ANKDGYHYTNANWSDAAEHKVVDIRNVVIGDPSPCGKGTIDIKRGIEVGHIFQLGTKYSE 423

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            M A+    +GKD  + MG YGIG  R+VA+ IE ++D  GIIWPD++APF ++++ I  
Sbjct: 424 AMKASVLDENGKDKTMIMGCYGIGVSRIVASAIEQNYDDNGIIWPDAIAPFHVAIVPINM 483

Query: 357 -HDQVCRDACEKIYARLSKVGCDVFW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +     CE++YA+L+++G DV   D+   ++G   A  +L+G P +++VG + +   
Sbjct: 484 QKSEAVAQKCEELYAQLNQLGYDVLLMDEPKARLGGMLADTELMGIPHRIVVGDRGLEKG 543

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++E K R     +D++++++I + ++     +
Sbjct: 544 QLEYKCRRDSDSQDIAVDDIIEFINNAVKTGK 575


>gi|114563199|ref|YP_750712.1| threonyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
 gi|122299726|sp|Q082E1|SYT_SHEFN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114334492|gb|ABI71874.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Shewanella
           frigidimarina NCIMB 400]
          Length = 642

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 142/439 (32%), Gaps = 40/439 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            + + +   RD      +L L    + + + G+  W   G      +   IR++  +   
Sbjct: 233 LVRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELEKFIRQKLGQYTY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y + M    +  ++     P +      IF   +KSYR
Sbjct: 291 QEVKGPLMMDRVLWERSGHWDKYAEAMFT-TNSENREYAIKPMNCPGHVQIFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F    +  +   +         +
Sbjct: 350 DLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHVFCTDDQVQEE-VSACIQMVYDTY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P                        D  D    +      +    
Sbjct: 409 ATFGFDNIVVKLSTRPEKR-----------------IGDDDMWDRAEDALKQALANNNIK 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I+    A Y    +     L D L    +     ++       G        AT+   
Sbjct: 452 YEILPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPTRLG--------ATYVAE 500

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D        +    +G++     ++   + GK   W   +    +++           D 
Sbjct: 501 DNSRQTPVMIHRAILGSLERFIGILIEEYAGKFPTWLAPMQVVVMNIT------DKQADY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E+I     + G    +D   E+IG +     L   P  ++VG + + + +V ++ R   
Sbjct: 555 VEEIVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTRDGI 614

Query: 425 IREDMSLEEVINYASHRFS 443
               + LE+       + S
Sbjct: 615 DLGKLKLEDFAAMIRQQIS 633


>gi|229549033|ref|ZP_04437758.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|312904390|ref|ZP_07763551.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|229305826|gb|EEN71822.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|310632289|gb|EFQ15572.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|315162804|gb|EFU06821.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0645]
 gi|315576849|gb|EFU89040.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0630]
          Length = 660

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 162/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++ R 
Sbjct: 246 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEIRL 303

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 304 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 363

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 364 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 423

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 424 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 470 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 518

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 519 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 575

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 576 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 635

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 636 SKETSVEDLSIFIDSMAAEVHNY 658


>gi|257094575|ref|YP_003168216.1| prolyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257047099|gb|ACV36287.1| prolyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 574

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 128/235 (54%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL  L+E P DAEI SH+LMLR GMI + + GIY+W+P+G + +  V  I+REE
Sbjct: 1   MRTSRFFLSTLKEAPSDAEIISHQLMLRAGMIKRLAGGIYTWMPIGLRVMRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+S+P +Q A+LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TD+ R 
Sbjct: 61  MDRAGAIELSMPAVQPAELWQESGRWEKYGPELLRCKDRHQRDFVIGPTHEEVITDVVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQ+Q+KFRDE+RPRFGVMR REFLMKD YSF    E  +  Y  MF +
Sbjct: 121 EVKSYRQLPLHFYQVQVKFRDEIRPRFGVMRGREFLMKDGYSFHSGFEDLQREYRNMFET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL+   + A++G IGG  SHEF VLAD+GE  +    D  DF    E
Sbjct: 181 YTRIFTRLGLQFRAVAADTGAIGGTGSHEFHVLADSGEDALAYCPD-SDFAANVE 234



 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 103/189 (54%), Gaps = 3/189 (1%)

Query: 257 AATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+ N    D  P+ +      RGIEVGHIF   T+Y+  +  TF    G+   ++M
Sbjct: 383 AVVADLRNVVAGDPSPDGRGTLELCRGIEVGHIFQLRTRYAEALKCTFLDESGQSRVMEM 442

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLS 373
           G YGIG  R+V A IE  HD +GI++P ++APF++ ++ +  A  Q  RDA + +Y  L 
Sbjct: 443 GCYGIGVTRIVGAAIEQGHDERGIVFPAAIAPFEVCIVPMGYAKSQAVRDAADALYGELM 502

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G DV  DD  E+ G  FA  +L+G P +V+VG + ++  K+E K R+    + +    
Sbjct: 503 REGIDVLLDDRNERPGVMFAEMELIGVPHRVVVGERGLAQGKLEYKGRVDSESQMLPAAT 562

Query: 434 VINYASHRF 442
           +  +   R 
Sbjct: 563 LGRFLKDRL 571


>gi|148984063|ref|ZP_01817358.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|147923352|gb|EDK74465.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301800452|emb|CBW33086.1| threonyl-tRNA synthetase [Streptococcus pneumoniae OXC141]
          Length = 647

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 156/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTEYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QIKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG+DH   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVVKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S++  +       +N 
Sbjct: 619 GQKETQTVSVDNFVQAILADIANK 642


>gi|332534597|ref|ZP_08410430.1| prolyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035947|gb|EGI72427.1| prolyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 574

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 124/237 (52%), Positives = 159/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYILATLKETPSDAEIVSHQLMLRAGMIRRVASGLYTWLPSGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GAIEM +P +Q ADLW ESGR++ +G E++R  DR+++    GPTHEEV+TD  R 
Sbjct: 61  MDKAGAIEMLMPVIQPADLWEESGRWNEFGPELMRFTDRHNRTFALGPTHEEVITDFVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQ+Q K RDE RPRFGVMR+REF MKDAYSF L+ E    +Y  M  +
Sbjct: 121 EISSYKQLPVTLYQVQTKVRDERRPRFGVMRAREFTMKDAYSFHLSEECLDATYQAMHKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGL   P+ A++G IGG LSHEF VLA++GE  +  S    D+    E  
Sbjct: 181 YCNIFERLGLDYRPVLADTGSIGGSLSHEFHVLAESGEDAIAFSD-GSDYAANIEKA 236



 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/198 (33%), Positives = 98/198 (49%), Gaps = 1/198 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +     T    A      E       +      RGIEVGHIF  GTKYS  M A      
Sbjct: 376 NWDRDVTDYEVADIRNIVEGDMSPCGQGVLQIKRGIEVGHIFQLGTKYSEAMKAGVLNEG 435

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDAC 365
           GK+  + MG YGIG  R+VAA IE ++D  GIIWP S+APF ++++ +         D  
Sbjct: 436 GKNQTMTMGCYGIGVSRIVAAAIEQNNDQYGIIWPQSIAPFDLAIVPMNMHKSHRIPDIA 495

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
             +Y  L   G DV +DD  E+ G  F   +L+G P  +++G + + ++KVE+K+R TG 
Sbjct: 496 NNLYQGLKDAGLDVLFDDRKERPGVMFNDMELIGVPFTLVIGERNLDENKVELKNRRTGE 555

Query: 426 REDMSLEEVINYASHRFS 443
           +  + ++  I+       
Sbjct: 556 KLMIDIDTAIDAIKAAVK 573


>gi|257420184|ref|ZP_05597178.1| threonyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257162012|gb|EEU91972.1| threonyl-tRNA synthetase [Enterococcus faecalis T11]
          Length = 645

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 231 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 289 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 349 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 409 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 455 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 504 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 560

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 561 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 620

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 621 SKETSVEDLSIFIDSMAAEVHNY 643


>gi|320084496|emb|CBY94289.1| Prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 572

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  I GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFILGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSD-VSDYAANIE 234



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 VVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   ++
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDI 562

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 563 VDYLVKAIK 571


>gi|319426373|gb|ADV54447.1| threonyl-tRNA synthetase [Shewanella putrefaciens 200]
          Length = 642

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 143/443 (32%), Gaps = 40/443 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +   + +   RD      +L L    + + + G+  W   G      +   IR + N
Sbjct: 229 LSTHLTRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSIFLELERFIRRKLN 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW  SG +D Y + M       ++     P +      IF   +
Sbjct: 287 QYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFT-TSSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +   +      
Sbjct: 346 KSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQVQEEVSACIQMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G ++I ++  + P                           D    +       
Sbjct: 405 YDTYSTFGFENIVVKLSTRPEKR-----------------IGDDAMWDRAEEALKQALRA 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +++    A Y    +     L D L    +     ++       G        AT
Sbjct: 448 NNIEFTLLPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPNRLG--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     ++   + G+   W   +    +++         
Sbjct: 497 YVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGRFPTWLAPMQVVVMNIT------DK 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  ++I     + G    +D   E+IG +     L   P  ++VG + + + +V ++ 
Sbjct: 551 QADYVQEIVKFFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R       M LE+       + S
Sbjct: 611 RDGIDLGKMRLEDFATKIHQQIS 633


>gi|113869200|ref|YP_727689.1| prolyl-tRNA synthetase [Ralstonia eutropha H16]
 gi|123133602|sp|Q0K6Q0|SYP_RALEH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|113527976|emb|CAJ94321.1| Prolyl-tRNA synthetase [Ralstonia eutropha H16]
          Length = 573

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 127/276 (46%), Positives = 170/276 (61%), Gaps = 3/276 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYNYMPIGLRVIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+S+P +Q A+LW E+GR+D  G E+LRL DR+++     PT EEV+TDI RS
Sbjct: 61  MNRAGAVELSMPVIQPAELWQETGRWDKMGPELLRLKDRHERDFAVQPTSEEVVTDIARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   +G + SY  M+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDTDGLRKSYENMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF R GL+   + A++G IGG  SHEF V+ADTGE  +                   
Sbjct: 181 YVRIFRRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYCPTSDYAANMEAAEALP 240

Query: 241 DIISLNSIVEQWTA---PYAATSDVHNEKLFDSLPE 273
            + S  +  E       P  A  +   E L   L  
Sbjct: 241 LLASRAAPAEDLVKTATPEKAKCEHVAEFLGIPLQR 276



 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/193 (35%), Positives = 109/193 (56%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ +      RGIEVGH+F  GT+YS  M+ATF   +GK   +
Sbjct: 381 PEPVVADLRNVVAGDASPDGQGTLEICRGIEVGHVFMLGTRYSESMNATFLDENGKTQPM 440

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  R++ A IE + D +GIIWP ++APF + +  +     +  +   ++I+A 
Sbjct: 441 QMGCYGIGVTRILGAAIEQNFDERGIIWPAAIAPFAVVICPVGYDRSEAVKAEADRIHAE 500

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G  FA  +L+G P +V+VG + + + KVE + R       +S+
Sbjct: 501 LLAAGVDVILDDRGERPGVMFADWELIGVPHRVVVGDRGLKEGKVEYQGRRDAQATAVSV 560

Query: 432 EEVINYASHRFSN 444
            +V+ +   + +N
Sbjct: 561 ADVVGHVRSQLAN 573


>gi|295098681|emb|CBK87771.1| prolyl-tRNA synthetase, family II [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 572

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 167/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+KM+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDKMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDS-SDYAANIE 234



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 112/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M+A  +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGKGTLMIKRGIEVGHIFQLGDKYSRAMNAAVQGEDGRNQVLTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+YA LS 
Sbjct: 443 CYGIGVTRVVAAAIEQNYDERGIVWPDNIAPFQVAILPMNMHKSYRVQELAEKLYAELSA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G ++ +   ++
Sbjct: 503 KGIDVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDSDEIEYKYRRNGEKQMIKTGDI 562

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 563 LDYLVKAIK 571


>gi|149182849|ref|ZP_01861310.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148849464|gb|EDL63653.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 643

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/438 (18%), Positives = 164/438 (37%), Gaps = 32/438 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++ + G 
Sbjct: 235 LRLLEEAKERDHRKIGKELNLFMN-SQKVGQGLPMWLPKGATIRRIIERYIVDKEEKLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P + S DL+  SG +D Y + M  + D +++ ++  P +      I+++ I SYR
Sbjct: 294 DHVYTPVMGSVDLYKTSGHWDHYQENMFPVMDMDNEQLVLRPMNCPHHMMIYKNSIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K  + ++    L ++ 
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHLFVRPDQIKEEFKRVVRLVLEVYK 413

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIISL 245
              L     R                  D  +T+ +   D   +          D++   
Sbjct: 414 DFDLNDYSFRLS--------------YRDPQDTEKYFDDDEMWNKAQQMLKEAMDEMEID 459

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  +L + + +S   ++    F    ++      T+ G 
Sbjct: 460 YFEAEGEAAFYGPKLDV---QVKTALGKEETLSTVQLD----FLLPERFD----LTYIGE 508

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DGK H   +     G +  +   +    +     +P  +AP ++ +I +     V  D  
Sbjct: 509 DGKHHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSP--DVHFDYA 564

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +K+   L   G  V  D   E+IG +   A +   P  ++VG   + +  V ++      
Sbjct: 565 KKVQEELQAQGLRVELDSRDEKIGYKIREAQMSKIPYMLVVGDNEIQEEAVNVRKYGEQK 624

Query: 426 REDMSLEEVINYASHRFS 443
            E +SL + +   +   +
Sbjct: 625 SETVSLSDFVQKVTDEVN 642


>gi|90417103|ref|ZP_01225031.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
 gi|90331119|gb|EAS46375.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
          Length = 574

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 163/239 (68%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +   +E+P DAE+ SH+LMLR GMI + + G+YSWLPLG +    V AI+R+E
Sbjct: 1   MRASQYLISTKKESPADAEVISHQLMLRAGMIRKVASGLYSWLPLGLRVFRKVEAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA+E+ +P +Q ADLW ESGR+  +G E+LR+ DR+ +    GPTHEEV+TDI R+
Sbjct: 61  MDRSGALEIMMPVVQPADLWTESGRWGQFGPELLRIKDRHGREFCLGPTHEEVVTDIIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFGVMR+REF MKDAYSF +     + +Y+ M+ +
Sbjct: 121 EIRSYKQLPANFYQIQTKFRDERRPRFGVMRTREFCMKDAYSFHVDSASLQETYDLMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y  IF R GL    + A++G IGG +SHEF VLAD+GE  +       D+    E  D 
Sbjct: 181 YSAIFDRTGLVYRAVLADTGSIGGSVSHEFHVLADSGEDAIVF-SSESDYAANIEKADA 238



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 113/189 (59%), Gaps = 4/189 (2%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ + V    RGIEVGHIF  GTKYS  M AT    +GKD  + MG Y
Sbjct: 386 ADIRNVVAGDPSPDGRGVLEIKRGIEVGHIFQLGTKYSEAMKATVLDENGKDRAMSMGCY 445

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVG 376
           GIG  R+VAA IE +HD  GIIWP+S+APF+++++ I     +   + C+ +Y++L   G
Sbjct: 446 GIGVSRIVAAAIEQNHDDNGIIWPESIAPFQVAIVPINMHKSERVAETCQTLYSKLVSAG 505

Query: 377 CDVFW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +V + D+   ++G   A  +L+G P ++++G + ++D  VE ++R     + ++++++ 
Sbjct: 506 YEVLFMDEPKARLGGMLADIELIGIPHRIVIGDRGLADGNVEYRNRREHENQHIAMDKLD 565

Query: 436 NYASHRFSN 444
           ++ +   + 
Sbjct: 566 DFIAENIAK 574


>gi|226942102|ref|YP_002797176.1| prolyl-tRNA synthetase [Laribacter hongkongensis HLHK9]
 gi|226717029|gb|ACO76167.1| Syp [Laribacter hongkongensis HLHK9]
          Length = 569

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 135/282 (47%), Positives = 178/282 (63%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFL  L+E P +AE+ SHKLMLR GMI + S G+Y+W+PLG + L  V AI+REE
Sbjct: 1   MRASQYFLSTLKEAPNEAELPSHKLMLRAGMIKRLSSGLYTWMPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YGKE+LR+ DR+++    GPTHEEV+TD  R 
Sbjct: 61  MNRAGAIELLMPAIQPAELWQESGRWEFYGKELLRVKDRHERDFCVGPTHEEVITDAVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  K +Y  M+ +
Sbjct: 121 EVKSYKQLPLNFYQIQTKFRDEVRPRFGVMRAREFVMKDAYSFHTDFDSLKATYQGMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y R+F RLGL   P+ A++G IGG  SHEF VLAD+GE  +        F    E  +  
Sbjct: 181 YCRVFTRLGLDFRPVAADTGSIGGTGSHEFQVLADSGEDVIAYCPT-SGFAANIELAEAV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              +      Q  A  A         L   L ++ +   + I
Sbjct: 240 APATPRPAASQPLAKVATPGVKTMADLVAFLKQDIKTMVKAI 281



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 3/207 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLP 297
           +D + L  +      P    +D+ N    D  P+ +      RGIEVGH+F    KY+  
Sbjct: 362 EDDVHLTGVNFGRDCPEPEVADLRNVVEGDPSPDGQGEIRLCRGIEVGHVFQLRKKYAEA 421

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-A 356
           M   F   DGK   ++MG YGIG  RVVAA IE   D +GII+ D++APF +S++ +   
Sbjct: 422 MDCGFLDQDGKRQIMEMGCYGIGVSRVVAAAIEQGFDERGIIFTDAMAPFTVSIVPMGYR 481

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  + A + +YA L   G DV  DD  E+ G   A ++L+G P +V++G + + + KV
Sbjct: 482 RSESVKAAADALYAELVAAGVDVLLDDRDERPGVLLADSELIGIPHRVVIGDRGLKEGKV 541

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E + R       + + E+  +   + +
Sbjct: 542 EYQGRRETEATSVEVAEIAAFVRSKLA 568


>gi|290512444|ref|ZP_06551810.1| prolyl-tRNA synthetase [Klebsiella sp. 1_1_55]
 gi|289774785|gb|EFD82787.1| prolyl-tRNA synthetase [Klebsiella sp. 1_1_55]
          Length = 583

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 12  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 71

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 72  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 131

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 132 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYTA 191

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 192 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDS-SDYAANIE 245



 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 110/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M+A  +G DG++  + MG
Sbjct: 394 EVADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSQAMNAAVQGEDGRNQILTMG 453

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GIIWPD++APF+++++ +  H     ++  EK+YA L  
Sbjct: 454 CYGIGVTRVVAAAIEQNFDDRGIIWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELRA 513

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 514 HGIDVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 573

Query: 435 INYASHRFS 443
           + Y      
Sbjct: 574 VEYLVKAIK 582


>gi|283783983|ref|YP_003363848.1| prolyl-tRNA synthetase [Citrobacter rodentium ICC168]
 gi|282947437|emb|CBG86984.1| prolyl-tRNA synthetase [Citrobacter rodentium ICC168]
          Length = 572

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL+   ++A++G IGG  SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YSKIFTRIGLEFRAVQADTGSIGGSASHEFQVLAQSGEDDIIFSDT-SDYAANIE 234



 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/185 (35%), Positives = 112/185 (60%), Gaps = 3/185 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A  +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKAAVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+YA L   
Sbjct: 444 YGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIV 563

Query: 436 NYASH 440
           ++  +
Sbjct: 564 SFLVN 568


>gi|159899369|ref|YP_001545616.1| threonyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892408|gb|ABX05488.1| threonyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 604

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/452 (18%), Positives = 155/452 (34%), Gaps = 44/452 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y     +   RD      +L L T    +   G+  WLP G    D +   +R+ Q   G
Sbjct: 186 YLWQQEEAKKRDHRKLGRELGLFT-FSQKVGAGLALWLPKGAILRDVLERFLRQAQIERG 244

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA---------MIYGPTHEEVMTD 116
            + +  P +   DL+  SG + +Y   +       +            +  P +     +
Sbjct: 245 YLPVVTPHMGKIDLYKTSGHWYTYRDGIFPPMREIENDDTENPEGEIYLLKPMNCPHHIE 304

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+ S  +SYR+LP    +    +R E      G++R R F + D++   +TP+  +  + 
Sbjct: 305 IYASEPRSYRDLPLRLAEFGTVYRYEHSGELTGLLRVRSFTVDDSH-LFVTPDQLEAEFL 363

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K+    L +F  +GLK    R              + L + G  +   S +  +    + 
Sbjct: 364 KVVDLILFVFGTMGLKDFQAR--------------VGLREVGNPKYIGSDEVWEKAQNAI 409

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
               +       +VE   A Y    D       D L    ++    ++            
Sbjct: 410 INAAEKKGLNYIVVEGEAAFYGPKLDFI---FRDVLGRQWQLGTVQVDYNLP-------- 458

Query: 296 LPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 + G DG+ H    +     G++      +   + G   +W   V    + +   
Sbjct: 459 ERFEIEYTGEDGQKHRPIMIHRAPFGSIERFVGTLIEQYAGAFPVWLAPVQVTLVPIT-- 516

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      E + A+L+  G  V  D    ++ ++   A  L  P  ++VG K     
Sbjct: 517 ----DRHVAYAESVAAKLNAQGLRVEVDASNNRMNAKIRDAQKLKIPYMLVVGDKEEEAG 572

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            V ++ R  G    +S++E I       +N +
Sbjct: 573 AVAVRQRSGGDLGSISVDEFIARIKDEVANYQ 604


>gi|322616066|gb|EFY12983.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620849|gb|EFY17709.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322623800|gb|EFY20637.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627248|gb|EFY24039.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322630555|gb|EFY27319.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638227|gb|EFY34928.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322645504|gb|EFY42031.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322648203|gb|EFY44670.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322657523|gb|EFY53795.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322663843|gb|EFY60043.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666676|gb|EFY62854.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672166|gb|EFY68278.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676523|gb|EFY72594.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322679385|gb|EFY75430.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|323193468|gb|EFZ78676.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197510|gb|EFZ82645.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201221|gb|EFZ86290.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323209616|gb|EFZ94549.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212132|gb|EFZ96956.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216437|gb|EGA01163.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323223373|gb|EGA07708.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225934|gb|EGA10154.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228525|gb|EGA12654.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236862|gb|EGA20938.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239638|gb|EGA23685.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323242315|gb|EGA26344.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249977|gb|EGA33873.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252407|gb|EGA36258.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255690|gb|EGA39443.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262873|gb|EGA46423.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265359|gb|EGA48855.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323271854|gb|EGA55272.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 572

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSD-VSDYAANIE 234



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 VVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   ++
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDI 562

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 563 VDYLVKAIK 571


>gi|283835256|ref|ZP_06354997.1| proline--tRNA ligase [Citrobacter youngae ATCC 29220]
 gi|291068967|gb|EFE07076.1| proline--tRNA ligase [Citrobacter youngae ATCC 29220]
          Length = 572

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDS-SDYAANIE 234



 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/189 (36%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A  +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKAAVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+YA L  
Sbjct: 443 CYGIGVTRVVAAAIEQNYDDRGIVWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 563 VDYLVKAIK 571


>gi|224582089|ref|YP_002635887.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|254782914|sp|C0Q6L7|SYP_SALPC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|224466616|gb|ACN44446.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 572

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSD-VSDYAANIE 234



 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 VVADIRNVVAGDPSPDGEGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   ++
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGKKSLIKTGDI 562

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 563 VDYLVKAIK 571


>gi|213648168|ref|ZP_03378221.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 306

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSD-VSDYAANIE 234


>gi|213423623|ref|ZP_03356603.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 322

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSD-VSDYAANIE 234


>gi|168823087|ref|ZP_02835087.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205340609|gb|EDZ27373.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
          Length = 572

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSD-VSDYAANIE 234



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 VVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   ++
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDI 562

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 563 VDYLVKAIK 571


>gi|194443070|ref|YP_002039482.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197250542|ref|YP_002145247.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|226701326|sp|B5F8V6|SYP_SALA4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701335|sp|B4SV24|SYP_SALNS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194401733|gb|ACF61955.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197214245|gb|ACH51642.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 572

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSD-VSDYAANIE 234



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 VVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   ++
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDI 562

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 563 VDYLVKAIK 571


>gi|168235024|ref|ZP_02660082.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194735941|ref|YP_002113265.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204926680|ref|ZP_03217882.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|226701337|sp|B4TYF5|SYP_SALSV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194711443|gb|ACF90664.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291887|gb|EDY31237.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204323345|gb|EDZ08540.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 572

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSD-VSDYAANIE 234



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 VVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   ++
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDI 562

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 563 VDYLVKAIK 571


>gi|167553343|ref|ZP_02347092.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|238911308|ref|ZP_04655145.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|205322190|gb|EDZ10029.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 572

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSD-VSDYAANIE 234



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 VVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   ++
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDI 562

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 563 VDYLVKAIK 571


>gi|161504638|ref|YP_001571750.1| prolyl-tRNA synthetase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|189083510|sp|A9MPG5|SYP_SALAR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160865985|gb|ABX22608.1| hypothetical protein SARI_02759 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 572

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSD-VSDYAANIE 234



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/188 (35%), Positives = 111/188 (59%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG 
Sbjct: 384 VADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKV 375
           YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   
Sbjct: 444 YGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQ 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   +++
Sbjct: 504 GIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIV 563

Query: 436 NYASHRFS 443
           +Y      
Sbjct: 564 DYLVKAIK 571


>gi|162139614|ref|YP_215228.2| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|114152248|sp|Q57T14|SYP_SALCH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|322713265|gb|EFZ04836.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 572

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSD-VSDYAANIE 234



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 VVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   ++
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGKKSLIKTGDI 562

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 563 VDYLVKAIK 571


>gi|16759234|ref|NP_454851.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16763631|ref|NP_459246.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29140783|ref|NP_804125.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56412515|ref|YP_149590.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161612617|ref|YP_001586582.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167990131|ref|ZP_02571231.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168230553|ref|ZP_02655611.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168245012|ref|ZP_02669944.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168264654|ref|ZP_02686627.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168464192|ref|ZP_02698095.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194449602|ref|YP_002044232.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194472823|ref|ZP_03078807.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|197264294|ref|ZP_03164368.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197361450|ref|YP_002141086.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198242516|ref|YP_002214203.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200386929|ref|ZP_03213541.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205351579|ref|YP_002225380.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207855760|ref|YP_002242411.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213051828|ref|ZP_03344706.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213428490|ref|ZP_03361240.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213580835|ref|ZP_03362661.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213865222|ref|ZP_03387341.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|81821351|sp|Q5PD80|SYP_SALPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81832731|sp|Q7CR62|SYP_SALTY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81849080|sp|Q8XEY9|SYP_SALTI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189083511|sp|A9N0U7|SYP_SALPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701327|sp|B5FJ42|SYP_SALDC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701328|sp|B5R434|SYP_SALEP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701329|sp|B5R5J8|SYP_SALG2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701334|sp|B4TK70|SYP_SALHS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701336|sp|B5BAQ2|SYP_SALPK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|25293215|pir||AF0532 prolyl-tRNA synthetase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16418747|gb|AAL19205.1| proline tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16501525|emb|CAD08702.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29136407|gb|AAO67974.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56126772|gb|AAV76278.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161361981|gb|ABX65749.1| hypothetical protein SPAB_00308 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407906|gb|ACF68125.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194459187|gb|EDX48026.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|195632930|gb|EDX51384.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197092926|emb|CAR58355.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197242549|gb|EDY25169.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197937032|gb|ACH74365.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199604027|gb|EDZ02572.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205271360|emb|CAR36153.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205331403|gb|EDZ18167.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205335202|gb|EDZ21966.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205336220|gb|EDZ22984.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205346928|gb|EDZ33559.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206707563|emb|CAR31837.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|267991932|gb|ACY86817.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301156869|emb|CBW16345.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312911213|dbj|BAJ35187.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321225175|gb|EFX50235.1| Prolyl-tRNA synthetase ; Bacterial type [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323128562|gb|ADX15992.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|326621946|gb|EGE28291.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326626606|gb|EGE32949.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332987194|gb|AEF06177.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 572

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSD-VSDYAANIE 234



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 VVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   ++
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDI 562

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 563 VDYLVKAIK 571


>gi|294084802|ref|YP_003551562.1| threonyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664377|gb|ADE39478.1| Threonyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 641

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 146/440 (33%), Gaps = 40/440 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
             +L +L+E   RD      +L +    + + + G   W   G      + + +R    +
Sbjct: 230 NAYLHMLEEAEKRDHRKLGKQLDMF--HLQEEAAGSVFWHQKGWFIYREIESYVRRRLEQ 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L    LW ESG +D + + M      +++ +   P +      IFR  IK
Sbjct: 288 AGYGEVKTPQLVDRTLWEESGHWDKFRENMFTAQSEDERTLALKPMNCPCHVQIFRQGIK 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F    + ++ S         
Sbjct: 348 SYRDLPLRMAEFGSCHRNEPSGALHGIMRVRAFTQDDAHIFCTEDQITEESVQF-CALLQ 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G   + ++    P                           D    +        
Sbjct: 407 SIYADFGFTDVRVKFSDRPEVR-----------------AGDDATWDKAESALTDACSAA 449

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               ++     A Y    +     L D++  + +     ++    F    +    + A +
Sbjct: 450 KLETTLNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVD----FVLPER----LDAEY 498

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG  H    +    +G+M     ++   + G+   W   V     S+          
Sbjct: 499 VGEDGNRHRPVMLHRAILGSMERWIGILIEQYSGRMPNWLAPVQIVVASIT------DSA 552

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  E++      +G  V  D   E+I  +     ++  P  + VG +      V ++  
Sbjct: 553 NDYAEQVARTAEAMGLRVERDFRNEKISYKVREHSVMKVPFILAVGGREAEAGTVALRRL 612

Query: 422 LTGIREDMSLEEVINYASHR 441
            +  +  + ++E +      
Sbjct: 613 GSNDQTVLDMKEALAMLRDE 632


>gi|167626332|ref|YP_001676832.1| threonyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189083609|sp|B0TY89|SYT_FRAP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167596333|gb|ABZ86331.1| threonyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 635

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 142/443 (32%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L      + S GI  W   G +    V   +R    + G
Sbjct: 231 YLHMLEEAEKRDHRKIGKALDLF--HFQEDSPGIAFWHDNGVRIWREVEDYMRASNKKYG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG    Y + M       ++     P +      ++ + + SY
Sbjct: 289 CGEIRTPLIADFSLWEKSGHASKYAENMF-ATKSENRDFAIRPMNCPTCVQVYNTKLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R+E      G+MR R F   D + F    +  +     +   +   
Sbjct: 348 RDLPIRMAEFGIVHRNEPSGSLHGLMRVRSFTQDDGHIFCAPEQVEEEVILMVKQCFEV- 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++    P     + E                   D          D    
Sbjct: 407 YKDFGFNDFTVKIALRPENRIGNDE-----------------TWDKSEQMLKNALDANNV 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              ++    A Y    + H   L D++  + +     ++       G        AT+  
Sbjct: 450 AYELLPGEGAFYGPKIEFH---LKDAIGRSWQCGTIQLDFSMPDRLG--------ATYID 498

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G     V +    +G++     ++   + G   +W           + +        +
Sbjct: 499 KNGNKQVPVMLHRAIVGSLERFIGMLIEHYAGNMPLW------LTPVQVAVMGISNHQDE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C+K++  L K G     D   E+IG +     LL  P  VI+G        V ++    
Sbjct: 553 YCQKVFETLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKSEQEQEIVTVRKHNG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                MS+ +   + + +    +
Sbjct: 613 EDLGQMSIGDFCAFLNEQIEAKK 635


>gi|256763421|ref|ZP_05504001.1| threonyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256958077|ref|ZP_05562248.1| threonyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|257079964|ref|ZP_05574325.1| threonyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|256684672|gb|EEU24367.1| threonyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256948573|gb|EEU65205.1| threonyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256987994|gb|EEU75296.1| threonyl-tRNA synthetase [Enterococcus faecalis JH1]
          Length = 645

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 231 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 289 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 349 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 409 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 455 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 504 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 560

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 561 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 620

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 621 SKETSVEDLSIFIDSMAAEVHNY 643


>gi|300938604|ref|ZP_07153336.1| prolyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|331645338|ref|ZP_08346449.1| proline--tRNA ligase [Escherichia coli M605]
 gi|281177420|dbj|BAI53750.1| prolyl-tRNA synthetase [Escherichia coli SE15]
 gi|300456450|gb|EFK19943.1| prolyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|330910045|gb|EGH38555.1| prolyl-tRNA synthetase [Escherichia coli AA86]
 gi|331046095|gb|EGI18214.1| proline--tRNA ligase [Escherichia coli M605]
          Length = 572

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 113/187 (60%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++++
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVD 564

Query: 437 YASHRFS 443
           Y   +  
Sbjct: 565 YLVKQIK 571


>gi|255974800|ref|ZP_05425386.1| threonyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256616698|ref|ZP_05473544.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|257081588|ref|ZP_05575949.1| threonyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257084237|ref|ZP_05578598.1| threonyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257417026|ref|ZP_05594020.1| threonyl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|255967672|gb|EET98294.1| threonyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256596225|gb|EEU15401.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256989618|gb|EEU76920.1| threonyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|256992267|gb|EEU79569.1| threonyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257158854|gb|EEU88814.1| threonyl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
 gi|295113730|emb|CBL32367.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Enterococcus sp.
           7L76]
          Length = 645

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 231 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 289 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 349 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 409 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 455 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 504 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 560

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 561 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 620

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 621 SKETSVEDLSIFIDSMAAEVHNY 643


>gi|218698853|ref|YP_002406482.1| prolyl-tRNA synthetase [Escherichia coli IAI39]
 gi|226701079|sp|B7NKX8|SYP_ECO7I RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218368839|emb|CAR16587.1| prolyl-tRNA synthetase [Escherichia coli IAI39]
          Length = 572

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 112/187 (59%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +      RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGTLQIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++++
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVD 564

Query: 437 YASHRFS 443
           Y   +  
Sbjct: 565 YLVKQIK 571


>gi|157371993|ref|YP_001479982.1| prolyl-tRNA synthetase [Serratia proteamaculans 568]
 gi|166980154|sp|A8GIB4|SYP_SERP5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157323757|gb|ABV42854.1| prolyl-tRNA synthetase [Serratia proteamaculans 568]
          Length = 572

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   AIE+ +P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNANAIEVCMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y  M+ +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQATYEAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL   P+ A++G IGG  SHEF VLAD+GE  +       DF    E
Sbjct: 181 YSKIFSRMGLDFRPVHADTGSIGGSASHEFQVLADSGEDDIVF-STGSDFAANIE 234



 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/192 (38%), Positives = 113/192 (58%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K   +  RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 380 PLPQVADIRNVVEGDASPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVL 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     +   E++Y  
Sbjct: 440 TMGCYGIGVTRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHKSFRVQALAEELYNT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G ++ +  
Sbjct: 500 LRSHGIDVILDDRKERPGVMFADMELIGVPHSIVIGDRNLDSEEIEYKNRRVGEKQMIKT 559

Query: 432 EEVINYASHRFS 443
            EVI++   +  
Sbjct: 560 GEVIDFLLGQIK 571


>gi|238787089|ref|ZP_04630889.1| Threonyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
 gi|238724877|gb|EEQ16517.1| Threonyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
          Length = 642

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHVFCTEEQVRDE-VNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    A+                         +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWTRAED-----------------DLAAALTENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    + S    A++ G
Sbjct: 451 PFDYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----ASYIG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G+M     ++   + G    W   V    +++           D
Sbjct: 500 ENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTWLAPVQVVVMNIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R  
Sbjct: 554 YVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + +  V++       + 
Sbjct: 614 KDLGSLDVNVVVDQLLTEIRSR 635


>gi|254468875|ref|ZP_05082281.1| threonyl-tRNA synthetase [beta proteobacterium KB13]
 gi|207087685|gb|EDZ64968.1| threonyl-tRNA synthetase [beta proteobacterium KB13]
          Length = 652

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 145/442 (32%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD       L L    I  ++ G+  W   G      +   +R++    G
Sbjct: 248 YLHRLEEAEKRDHRKLGKHLDLF--HIQDNAPGMVFWHAKGWSLWQEIENYMRKKFVDYG 305

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  PT+    LW +SG +++Y + M  +     +     P +      IF   + SY
Sbjct: 306 YQEIKTPTVLDKTLWEKSGHWENYHENMF-ITHSEHRDYAVKPMNCPGHVQIFNHSLHSY 364

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +      N      +  
Sbjct: 365 RELPLRLAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEDQILDEVINFN-KMLMET 423

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P     S E                   D    +          
Sbjct: 424 YKDFGFNDIEVKLSTRPEKRVGSDE-----------------VWDQSEKALEEALKATGL 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    +     L DSL    +     ++    F    +    ++A +  
Sbjct: 467 DYEIQPGEGAFYGPKIEY---VLRDSLNRLWQCGTIQLD----FNLPVR----LNAEYVD 515

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +  K H V +    +G+M     ++   + GK   W   V    +++            
Sbjct: 516 ENSNKKHPVMLHRAIVGSMERFIGILIEHYAGKFPTWLAPVQAVVMNI------SDSQAK 569

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L K       D   E+I  +     +   P  +++G + + + +V ++ +  
Sbjct: 570 YVGDVVDFLKKNDIRCESDLRNEKITYKIREHSISRIPFMLVIGDREMQNKQVAVRTQQG 629

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M+LEE +   + + +  
Sbjct: 630 EDLGVMTLEEFVETMNTQITAK 651


>gi|261408878|ref|YP_003245119.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261285341|gb|ACX67312.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 645

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 168/442 (38%), Gaps = 37/442 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L + T       +G+  WLP G K    +   I + + R G 
Sbjct: 235 LRLLEEAKKRDHRKLGKELQMFT-FSQLVGQGLPIWLPNGAKLRRTLERYIVDMEERLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + +L+  SG ++ Y ++M    + +++ ++  P +      +++S + SYR
Sbjct: 294 QHVYTPVLGNVELYKTSGHWEHYQEDMFPKMEMDNEELVLRPMNCPHHMMVYKSDMHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ ++ R E+     G+ R R   + D++ F   P+  K  + ++    + ++
Sbjct: 354 DLPIRIAELGMQHRYEMSGALTGLHRVRAMTLNDSHIFCR-PDQIKEEFARVIQLIMTVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS-KDFMDFPIPSENTDFDDIIS 244
              G+     R                  D  +T+ +    +  +          + +  
Sbjct: 413 KDFGIHDYRFRLS--------------YRDPQDTEKYFQNDEMWEMSQRMLREVVESLDM 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  +L + + +S   ++    F    ++       + G
Sbjct: 459 PFYEAEGEAAFYGPKLDV---QIRTALGKEETLSTVQLD----FLLPERF----ELEYVG 507

Query: 305 ADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H   +   GI G M    A +  +  G   +W   V    I + N         D
Sbjct: 508 DDGQKHRPVVIHRGILGTMERFTAFLLENFAGALPLWLSPVQVKVIPVSN------AFED 561

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G  V  D   E++G +   A L   P   IVG    +   V ++ R  
Sbjct: 562 YAKEVAEKLQFAGISVEPDLRNEKLGYKIREAQLEKIPYMFIVGENEKNAGAVSVRKRGE 621

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G      L+E+I       + +
Sbjct: 622 GDIGAQPLDEIILKLREEINTH 643


>gi|238791701|ref|ZP_04635338.1| Threonyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
 gi|238728805|gb|EEQ20322.1| Threonyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
          Length = 642

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    A   E  +  +    D P             
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWTRA---EDDLAAALTENDIPFE----------- 453

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    + S    A++ G
Sbjct: 454 ---YQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----ASYIG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G+M     ++   + G    W   V    +++           D
Sbjct: 500 ENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTWLAPVQVVVMNIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R  
Sbjct: 554 YVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + +  V++       + 
Sbjct: 614 KDLGSLDVNVVVDQLLTEIRSR 635


>gi|91793061|ref|YP_562712.1| threonyl-tRNA synthetase [Shewanella denitrificans OS217]
 gi|123060978|sp|Q12NI7|SYT_SHEDO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91715063|gb|ABE54989.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Shewanella
           denitrificans OS217]
          Length = 642

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 140/441 (31%), Gaps = 40/441 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + + + G+  W   G      +   IR++  +   
Sbjct: 233 LTRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSLFLELEKFIRQKLGQYTY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M    +  ++     P +      IF   +KSYR
Sbjct: 291 QEVKGPLMMDRALWERSGHWDKYSDAMFT-TNSENREYAIKPMNCPGHVQIFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F    +  K   +         +
Sbjct: 350 DLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFCTDDQVQKE-VSDCIQMVYDTY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G ++I ++  + P                        D  D    +           
Sbjct: 409 ATFGFENIVVKLSTRPEKR-----------------IGDDDMWDRAEEALKQALIANEIE 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I+    A Y    +     L D L    +     ++       G        AT+   
Sbjct: 452 FEILPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPSRLG--------ATYVAE 500

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D        +    +G++     ++   + GK   W   +    +++           D 
Sbjct: 501 DNTRQTPVMIHRAILGSLERFLGILIEEYAGKFPTWLAPMQVVVMNIT------DKQADY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +     + G    +D   E+IG +     L   P  ++VG + + + +V ++ R   
Sbjct: 555 VQDVVKIFKEQGIRASFDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTRDGI 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS+E+         S+ 
Sbjct: 615 DLGKMSIEDFAKKIHKDISSR 635


>gi|300113463|ref|YP_003760038.1| prolyl-tRNA synthetase [Nitrosococcus watsonii C-113]
 gi|299539400|gb|ADJ27717.1| prolyl-tRNA synthetase [Nitrosococcus watsonii C-113]
          Length = 574

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 119/231 (51%), Positives = 157/231 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAEI SH+LMLR   I + + G+Y+WLPLG + L  V  IIREE
Sbjct: 1   MRTSQYLLTTTRETPADAEIISHQLMLRGSFIRRLAAGLYTWLPLGLRVLRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +P +Q A+LW E+GR++ YG E+LR  DR+ +   +GPTHEEV+TD+ R 
Sbjct: 61  MDKAGAQEVLMPAVQPAELWRETGRWEQYGSELLRFTDRHQRFFCFGPTHEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQLKFRDE+RPRFGVMRSREFLMKDAYSF         +Y++M+ +
Sbjct: 121 EIQSYKQLPANFYQIQLKFRDEIRPRFGVMRSREFLMKDAYSFHTDQTSLGQTYHQMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  IF R+GL    ++A++G IGG  SHEF VLA +GE  +  S       
Sbjct: 181 YSCIFDRIGLTFRAVQADTGMIGGKTSHEFHVLATSGEDAIAFSDKSAYAA 231



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 74/196 (37%), Positives = 106/196 (54%), Gaps = 3/196 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P   T+D+ N    D  P+ +     ARGIEVGHIF  G KYS  M+AT     G+   +
Sbjct: 377 PEPTTADIRNVVDGDPSPDGEGTLSIARGIEVGHIFQLGKKYSQAMNATVLDEAGRAINL 436

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD  GIIWP  +APF+++L+ I AH  V  ++  +++Y  
Sbjct: 437 AMGCYGIGVSRVVAAAIEQNHDEHGIIWPAPIAPFQLALVPINAHKSVRVKEMSDQLYTE 496

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V  DD   + G  FA  DL+G P ++++  + + +S VE K R  G    + L
Sbjct: 497 LQAAGFEVLLDDRQLRPGVIFADMDLIGIPHRLVISERGLENSTVEYKRRQDGKTCVIQL 556

Query: 432 EEVINYASHRFSNNRP 447
           +  I+    +     P
Sbjct: 557 DNFISGLKDQLKTPIP 572


>gi|313672947|ref|YP_004051058.1| prolyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939703|gb|ADR18895.1| prolyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 572

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 133/282 (47%), Positives = 180/282 (63%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYF+P L+ENP DAE+ SHKLM+R GMI + + GIY++LP+G + +  V  IIR+ 
Sbjct: 1   MRLSKYFVPTLRENPSDAEVVSHKLMVRAGMIRKVAAGIYNYLPMGLRVIRKVENIIRKY 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +  A+LW ESGR++ YGKE+LR  DR+D+    GPTHEEV+TDI R+
Sbjct: 61  MNEAGAIEILMPAVVPAELWKESGRWNVYGKELLRFKDRHDRDFCMGPTHEEVVTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY++LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+  EG++ SY  M  +
Sbjct: 121 EIKSYKDLPVNLYQIQTKFRDEVRPRFGLMRGREFIMKDAYSFDVDDEGAEKSYGLMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF   GLK   + A+SG IGG+ SHEF+V A+TGE  V       D+    E     
Sbjct: 181 YCKIFESCGLKYKVVEADSGAIGGNFSHEFMVTAETGEDFVISCDSC-DYAANVEKAPVI 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           D    +  VE+        +    E++   L    +   + +
Sbjct: 240 DNFEEDDEVEKPIEKIETKNQKTVEEVAKFLNVETKKVVKTM 281



 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/196 (40%), Positives = 111/196 (56%), Gaps = 5/196 (2%)

Query: 256 YAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
             A SD  N K  D  P+     V  +GIEVGHIF  GTKYS  M+AT+   DGK  Y+ 
Sbjct: 376 VTAFSDFINAKPGDKCPKCGGTYVITKGIEVGHIFKLGTKYSKSMNATYLDKDGKQQYIV 435

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R  AA IE +HD KGIIWP  +APF++ +I I   D+   +  E +Y +L 
Sbjct: 436 MGCYGIGVGRTAAAAIEQNHDEKGIIWPIQIAPFEVVIIPINTDDEDVVNLSETLYKKLL 495

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           K   +V  DD  E+ G +F  ADL+G+P++V +G K + + +VEI  R TG + +   ++
Sbjct: 496 KKNVEVIIDDRNERAGVKFNDADLVGYPIRVNIGKKTLENGEVEIVIRKTGDKINCKKDD 555

Query: 434 VIN---YASHRFSNNR 446
            ++          NN+
Sbjct: 556 ALSEILRIREELYNNK 571


>gi|256963904|ref|ZP_05568075.1| threonyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|256954400|gb|EEU71032.1| threonyl-tRNA synthetase [Enterococcus faecalis HIP11704]
          Length = 645

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 231 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 289 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 349 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 409 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 455 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 504 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 560

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 561 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 620

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 621 SKETSVEDLSIFIDSMAAEVHNY 643


>gi|323700409|ref|ZP_08112321.1| prolyl-tRNA synthetase [Desulfovibrio sp. ND132]
 gi|323460341|gb|EGB16206.1| prolyl-tRNA synthetase [Desulfovibrio desulfuricans ND132]
          Length = 580

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 129/244 (52%), Positives = 172/244 (70%), Gaps = 1/244 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y++P L+E+P DAE+ SHKL++R GMI + + GIY++LPLG +A++ V  I+REE
Sbjct: 1   MRLSRYYIPTLKEDPADAEVVSHKLLMRAGMIRKLTSGIYNYLPLGLRAINKVAQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +PT+Q ADLW E+GR+D YGKE+LR  DRND+    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGALEVLLPTVQPADLWRETGRWDYYGKELLRFKDRNDRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE+RPRFG+MR REF+MKD YSFD    G++ SY  MF +
Sbjct: 121 EIKSYKQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDGYSFDKDEAGAEQSYWDMFNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y   F R+GL+  P++A+SG IGG  SHEF+VLA+TGE  +       DF    E    +
Sbjct: 181 YKAAFTRIGLRFKPVQADSGAIGGSFSHEFMVLAETGEDTIASCLSC-DFAANLEKAKVN 239

Query: 241 DIIS 244
               
Sbjct: 240 APKG 243



 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 74/192 (38%), Positives = 111/192 (57%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                    +D+   +  D+ PE        +GIEVGH+F  G KYS  M ATF   +GK
Sbjct: 375 GRDCDIVQYADLRVIEPTDACPECGGAIEFTKGIEVGHVFKLGLKYSKKMEATFLDENGK 434

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
             Y+ MG YGIG  R+VA+ IE + D  G  +P S+APF++ LI++   DQ   D  E++
Sbjct: 435 SQYMIMGCYGIGVSRIVASAIEQNFDENGCCFPPSIAPFEVCLISLGGKDQDVADKAEEL 494

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           YA L K+G DV +DD GE+ G +FA ADL+G+P+Q+++G K + +  +E K R TG + +
Sbjct: 495 YAELMKLGVDVAFDDRGERPGVKFAEADLIGYPMQLVLGGKGLKNGIIEAKDRKTGEKVE 554

Query: 429 MSLEEVINYASH 440
           + L+      + 
Sbjct: 555 LPLDTFAASFAD 566


>gi|254483545|ref|ZP_05096771.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
 gi|214036202|gb|EEB76883.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
          Length = 580

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 125/290 (43%), Positives = 177/290 (61%), Gaps = 6/290 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S + +   +E P DAE+ SH+LMLR G+I + + G+YSWLPLG + L  V  ++REE
Sbjct: 11  MRTSNFLIATQKETPADAEVISHQLMLRAGLIRKLAAGLYSWLPLGLRVLRKVENVVREE 70

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+S+P +Q A+LW ESGR++ YG E+LR+ DR+ +    GPTHEEV+TD+ R+
Sbjct: 71  MNAAGAQEVSMPVVQPAELWQESGRWEQYGSELLRIQDRHQRDFCLGPTHEEVITDLIRN 130

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K RDE+RPRFG+MRSREFLMKDAYSF  +    + +Y  M  +
Sbjct: 131 EVKSYKQLPLNMYQIQTKVRDEIRPRFGIMRSREFLMKDAYSFHASQASLEDTYQIMHGA 190

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y ++F RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E  +  
Sbjct: 191 YTKVFTRLGLDFRPVIADTGSIGGSASHEFHVLANSGEDDIAFSDS-SDYAANIEMAEAV 249

Query: 240 ----DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
               +       + E  T    +  D+ N    ++    K +  +G + G
Sbjct: 250 SPAIERPGPSEEMTEVATPGVKSIEDLANFLCIEATQSVKTLIVKGEDEG 299



 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 69/195 (35%), Positives = 113/195 (57%), Gaps = 3/195 (1%)

Query: 253 TAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
             P +  +D+      D+ P+ K      RGIEVGHIF  GTKYS  M A     +GK+ 
Sbjct: 386 DCPLSQVADLREVVEGDASPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKAEVLNENGKNV 445

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIY 369
            + MG YGIG  RVVAA IE +HD KGIIWP+++APF+++++ +     +   +  E +Y
Sbjct: 446 TMTMGCYGIGVSRVVAAAIEQNHDDKGIIWPEAMAPFQLAIVPLNMQKSEAVANCAEALY 505

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A L  VG DV  DD  E+ G +FA  +L+G P ++++G + +++ ++E K R     + +
Sbjct: 506 ANLQSVGVDVLLDDRNERPGVKFADMELIGIPHRIVIGDRALAEGQIEYKGRRDEDSQLI 565

Query: 430 SLEEVINYASHRFSN 444
             E+++++   +  +
Sbjct: 566 PQEDIVSFLQEQLRS 580


>gi|33152811|ref|NP_874164.1| threonyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
 gi|71153574|sp|Q7VKR9|SYT_HAEDU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33149036|gb|AAP96553.1| threonyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
          Length = 643

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 71/445 (15%), Positives = 142/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LTEYLTRLEEAAKRDHRRIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW  +G + +Y  +++      ++     P +      IF   +
Sbjct: 287 EYDYQEVKGPFMMDRVLWERTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T E  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEEQIESEVTACIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P                      + D  D      +     
Sbjct: 405 YDIYSTFGFTNIFVKLSTRPDNR-----------------IGADDMWDRAEAGLSAALSA 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I     A Y    +     L D L    +     ++                A+
Sbjct: 448 NGLEYQIQHGEGAFYGPKIEF---ALRDCLGREWQCGTVQLDFALPSRLD--------AS 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D   H    +    +G++     +I   + G   +W   +    +++         
Sbjct: 497 YVTEDNSRHTPVMIHRAILGSIERFIGIITEEYAGFFPVWLAPIQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +++  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QADYVQQVVKQLSDAGLRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEITEGKVSVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++E  +     +    
Sbjct: 611 RKGEDLGTFNIEAFVEMLKAQVKTR 635


>gi|322514773|ref|ZP_08067797.1| threonine--tRNA ligase [Actinobacillus ureae ATCC 25976]
 gi|322119269|gb|EFX91397.1| threonine--tRNA ligase [Actinobacillus ureae ATCC 25976]
          Length = 653

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 71/445 (15%), Positives = 138/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 239 LAEYLTRLEEAAKRDHRRIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 296

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW  +G + +Y  +++      ++     P +      IF   +
Sbjct: 297 EYDYQEVKGPFMMDRVLWERTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 355

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 356 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 414

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P                           D            
Sbjct: 415 YDIYSTFGFSNIQVKLSTRPENR-----------------IGDDAMWDRAEDGLAKALTA 457

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                A+
Sbjct: 458 NGLSYEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTIQLDFALPGRLD--------AS 506

Query: 302 FKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    +G+   V +    +G++     +I   + G    W        +++         
Sbjct: 507 YVAEDNGRRTPVMIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNIT------DS 560

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   LS  G     D   E++G +     L   P  ++ G K +   KV ++ 
Sbjct: 561 QADYVQKVTKALSDAGIRAKSDLRNEKVGFKVREHTLRRVPYMLVCGDKEIEAGKVSVRT 620

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE +    ++    
Sbjct: 621 RKGADLGTFTIEEFVEILKNQVKAR 645


>gi|229846781|ref|ZP_04466888.1| threonyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
 gi|229810270|gb|EEP45989.1| threonyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
          Length = 643

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 144/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 QYDYQEVKGPFMMDRVLWEKTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P     S E                   D            
Sbjct: 405 YDIYSTFGFTNIAVKLSTRPENRIGSDE-----------------MWDRAEAGLAAALAH 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++                AT
Sbjct: 448 NGLEYEIQEGEGAFYGPKIEF---ALRDCLGREWQCGTVQLDFALPGRLD--------AT 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G    W        +++         
Sbjct: 497 YVAEDNSRKTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPTQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ K+ ++ 
Sbjct: 551 QADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKIAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE      ++  + 
Sbjct: 611 RKGADLGTFTVEEFAEILKNQVRSR 635


>gi|29377326|ref|NP_816480.1| threonyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|255971805|ref|ZP_05422391.1| threonyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|256854147|ref|ZP_05559512.1| threonyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|73919789|sp|Q830D0|SYT_ENTFA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|29344793|gb|AAO82550.1| threonyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|255962823|gb|EET95299.1| threonyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|256711090|gb|EEU26133.1| threonyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|323481721|gb|ADX81160.1| threonyl-tRNA synthetase [Enterococcus faecalis 62]
          Length = 645

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 231 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 289 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 349 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 409 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 455 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 504 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 560

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 561 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 620

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 621 SKETSVEDLSIFIDSMAAEVHNY 643


>gi|257421590|ref|ZP_05598580.1| threonyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|257163414|gb|EEU93374.1| threonyl-tRNA synthetase [Enterococcus faecalis X98]
          Length = 645

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 231 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 289 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 349 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 409 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 455 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 504 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 560

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 561 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 620

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 621 SKETSVEDLSIFIDSMAAEVHNY 643


>gi|52425108|ref|YP_088245.1| threonyl-tRNA synthetase [Mannheimia succiniciproducens MBEL55E]
 gi|73919804|sp|Q65TQ0|SYT_MANSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|52307160|gb|AAU37660.1| ThrS protein [Mannheimia succiniciproducens MBEL55E]
          Length = 643

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 142/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LNEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 EYDYQEVKGPFMMDRVLWEKTGHWQNY-GDLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIRMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G  +I ++  + P                           D            
Sbjct: 405 YDIYSTFGFTNIAVKLSTRPENR-----------------IGDDAMWDRAEQGLANALAH 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++               +A+
Sbjct: 448 NGLQYEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTVQLDFALPGRL--------NAS 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G    W   V    +++         
Sbjct: 497 YVAEDNDRRTPVMIHRAILGSIERFIGIITEEYAGFFPSWLAPVQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +K+   LS  G  V  D   E++G +     L   P  ++ G K +S+ KV ++ 
Sbjct: 551 QAEYVQKVTKTLSDAGLRVKSDLRNEKVGFKVREHTLRRVPYMLVCGDKEISEGKVSVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        S+EE +    ++  + 
Sbjct: 611 RRGADLGTYSVEEFVEILKNQVRSR 635


>gi|183221772|ref|YP_001839768.1| threonyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911846|ref|YP_001963401.1| threonyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167776522|gb|ABZ94823.1| Threonine--tRNA ligase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167780194|gb|ABZ98492.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase; ThrRS)
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 638

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 150/440 (34%), Gaps = 38/440 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L +      + G   W P G    + + + IREE  R 
Sbjct: 236 EYIFLIEEAKKRDHRKLGKELDLFS--FQDEAPGFPFWHPKGTVLWNTLASYIREECFRR 293

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + ++ LW +SG +D++ + M    D ++      P +      I++ H+ S
Sbjct: 294 GYQEIKTPAILNSSLWKKSGHWDNFKENM-YFTDIDESEFAVKPMNCPGCCLIYKYHMHS 352

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  F ++    R E+     G+ R R F   DA+ +    +        +      
Sbjct: 353 YRELPLRFMELGNVHRHEMSGVLHGLFRVRAFTQDDAHIYAPLDKVESE-VEDIIDFTFD 411

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++ + G         + P     S E                   +    + +       
Sbjct: 412 VYKKFGFTEFKTFIATRPEKSQGSDE-----------------DWNLATQALHDALKKKG 454

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    +     + DSL    +     I+    F    ++ L  +A+  
Sbjct: 455 IEYGIKEGDGAFYGPKIEF---NIKDSLGRLWQCGTVQID----FSMPNRFELDFTAS-- 505

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               K   V +     G++     ++    +GK  +W         + I +    +   D
Sbjct: 506 -DGKKHAPVMIHRAIYGSLERFIGILIEHFEGKFPLW------LNPTQIRVLTVAETHSD 558

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++Y  L   G  V  D   E+IGS+   + +      +I+G K      +  +    
Sbjct: 559 YAKEVYQDLVMQGFRVELDVRNEKIGSKIRDSIMKRSSYTLILGDKEKEAGSISYRRMGE 618

Query: 424 GIREDMSLEEVINYASHRFS 443
                +S +  ++      +
Sbjct: 619 ETTATVSRDGFLSLLKGELN 638


>gi|189424928|ref|YP_001952105.1| threonyl-tRNA synthetase [Geobacter lovleyi SZ]
 gi|189421187|gb|ACD95585.1| threonyl-tRNA synthetase [Geobacter lovleyi SZ]
          Length = 646

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 149/444 (33%), Gaps = 39/444 (8%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E  R D      +L L +    +   G   W P G      +    R+E  +
Sbjct: 240 EAYLHRLEEAKRRDHRKLGRELDLFS-FNDEVGAGFAIWHPKGAMLRTLLEDFERKEHLK 298

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                +  P +   +LW  SG YD+Y + M    + ++++    P +      I++S ++
Sbjct: 299 RDYDIVVGPQILKTELWQRSGHYDNYRENM-YFTEVDEQSFGVKPMNCLSHMMIYKSQLR 357

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  ++++    R E      G++R R F   DA+    TPE        +     
Sbjct: 358 SYRDLPQRYFELGTVHRHERAGVLHGLLRVRCFTQDDAHILC-TPEQLDAEIKGVLKFVS 416

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G +       + P     S E                   +    +      D 
Sbjct: 417 DVMGIFGFEYEM-ELSTRPEKSIGSDE-----------------DWERATGALLGALKDT 458

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A Y    D+   KL D L    + +    +    F    ++ L   A+ 
Sbjct: 459 GRDFEINEGDGAFYGPKIDI---KLRDCLDRRWQCATIQCD----FTLPERFDLTYVAS- 510

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                K   V +    +G++     V+     G   +W   V    +++           
Sbjct: 511 --DGEKKRPVMVHRVILGSIERFIGVLIEHFAGNFPLWLAPVQAVVLTVT------DNQI 562

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++Y +L   G  V  D   E++  +   A L   P  +++G K V    V  + R 
Sbjct: 563 PYAQEVYKQLRSAGIRVQEDLRNEKLNFKIREAQLQKIPYMLVIGDKEVEQGTVTPRFRD 622

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                 M  +  I +        +
Sbjct: 623 GKNLHAMKPDAFIAFVEAETKAYK 646


>gi|15901467|ref|NP_346071.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|111657539|ref|ZP_01408280.1| hypothetical protein SpneT_02001261 [Streptococcus pneumoniae
           TIGR4]
 gi|149011514|ref|ZP_01832761.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|303253984|ref|ZP_07340104.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|303258557|ref|ZP_07344537.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|303262647|ref|ZP_07348587.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|303263586|ref|ZP_07349508.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS397]
 gi|303266970|ref|ZP_07352845.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|303269866|ref|ZP_07355610.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|22654131|sp|Q97PI4|SYT_STRPN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|14973120|gb|AAK75711.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|147764504|gb|EDK71435.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|301802334|emb|CBW35088.1| threonyl-tRNA synthetase [Streptococcus pneumoniae INV200]
 gi|302599072|gb|EFL66098.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|302636203|gb|EFL66698.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|302640058|gb|EFL70513.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|302640601|gb|EFL71004.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302643487|gb|EFL73759.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|302646624|gb|EFL76849.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS397]
          Length = 647

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 156/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 VSGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTDYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QIKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG+DH   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S++  +       +N 
Sbjct: 619 GQKETQTVSVDNFVQAILADIANK 642


>gi|322657154|gb|EFY53437.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322686289|gb|EFY82273.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
          Length = 277

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSD-VSDYAANIE 234


>gi|256960954|ref|ZP_05565125.1| threonyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256951450|gb|EEU68082.1| threonyl-tRNA synthetase [Enterococcus faecalis Merz96]
          Length = 645

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 231 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 289 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 349 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 409 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 455 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 504 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 560

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 561 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 620

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 621 SKETSVEDLSIFIDSMAAEVHNY 643


>gi|229175285|ref|ZP_04302800.1| Threonyl-tRNA synthetase [Bacillus cereus MM3]
 gi|228608117|gb|EEK65424.1| Threonyl-tRNA synthetase [Bacillus cereus MM3]
          Length = 645

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 168/433 (38%), Gaps = 30/433 (6%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             GL++   R             +   ADT   + +   +  +          D++    
Sbjct: 416 DFGLENYSFRLS-----------YRDPADTK--KYYADDEMWEKAQGMLKEAMDEMGLDY 462

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV   ++  +L +++ +S   ++    F    ++      ++ G D
Sbjct: 463 YEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELSYVGED 511

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK H   +     G +  +   +    +     +P  +AP +  +I +    QV  D  +
Sbjct: 512 GKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQAQVIPVSP--QVHLDYAK 567

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++       
Sbjct: 568 KVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQKS 627

Query: 427 EDMSLEEVINYAS 439
           E ++L+  ++   
Sbjct: 628 ETIALDAFVDMIK 640


>gi|34763461|ref|ZP_00144407.1| Threonyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|237741623|ref|ZP_04572104.1| threonyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|294785766|ref|ZP_06751054.1| threonine--tRNA ligase [Fusobacterium sp. 3_1_27]
 gi|27886876|gb|EAA24002.1| Threonyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|229429271|gb|EEO39483.1| threonyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|294487480|gb|EFG34842.1| threonine--tRNA ligase [Fusobacterium sp. 3_1_27]
          Length = 637

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 163/443 (36%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  K+   + +   RD      +L L    + ++  G   +LP G    + +  + R+E 
Sbjct: 226 RLKKHLKLMEEAEKRDHRKLGKELELF--FLSEYGPGFPFFLPKGMIIRNVLIDLWRKEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G +++  P + + +LW  SG + +Y + M   ++ ++      P +       F+  
Sbjct: 284 EKAGYLQLETPIMLNKELWEISGHWFNYRENMYT-SEIDELEFAIKPMNCPGGVLSFKHQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     +   
Sbjct: 343 LHSYKDLPARLAELGRVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + + +L      +   + P     S E                   D    +     D
Sbjct: 402 IDKFYSKLFGFEYEIELSTKPEKAIGSQE-----------------IWDMAEAALAGALD 444

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     I     A Y    D    K+ D++    +     ++    F    ++      
Sbjct: 445 KLGRKYKINPGDGAFYGPKLDF---KIKDAIGRMWQCGTIQLD----FNLPERFD----V 493

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G DG+ H    +     G++     ++   + G   +W   V    ++L      + 
Sbjct: 494 TYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMWLAPVQVKVLTL------ND 547

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEI 418
            C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V +  V I
Sbjct: 548 ECIPYAKEIMNKLEELGIRAELDDRNETIGYKIREANGKYKIPMQLIIGKNEVENKGVNI 607

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  +    L+E  NY    
Sbjct: 608 RRFGSKDQFTKPLDEFYNYVVDE 630


>gi|289523104|ref|ZP_06439958.1| threonine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503647|gb|EFD24811.1| threonine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 624

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 145/438 (33%), Gaps = 41/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L + +  +   + G   + P G   L+ +    R+   + G
Sbjct: 218 YLAKVEEAKRRDHRRLGKELDIFS--MQSEAPGFPFFHPKGVVVLNVLVDFWRKVHVQRG 275

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +   DLW+ SG +D Y + M    + + K     P +      +++S ++SY
Sbjct: 276 YQEIKTPLILDQDLWIRSGHWDHYRENM-YFTEIDGKPFAIKPMNCPGGILVYKSQLRSY 334

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+ P    ++ +  R E      G+MR R F   DA+ F  T +  K     +      I
Sbjct: 335 RDFPLKLAELGVVHRHERSGVLHGLMRVRCFTQDDAHIF-TTEDHIKEEIIDIMNIVKYI 393

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G                      V   T        K   D    +     DD   
Sbjct: 394 YGVFGFPY------------------HVELSTRPENAMGEKALWDRAEQALQEALDDQGV 435

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    D H E              R  + G I     +       T+ G
Sbjct: 436 EYKLNPGDGAFYGPKIDFHLED----------CIGRTWQCGTI-QLDFQMPEKFDITYIG 484

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +    +G++     ++   + G    W           + I         
Sbjct: 485 PDGEPHRPVMIHRTVLGSLERFLGILIEQYAGAFPYW------LAPVQVKILPVSDEHLT 538

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + + + L K    V  D     +G +   A +   P  +I+G++ V +  V ++ R  
Sbjct: 539 YAKNVASLLQKQDVRVEVDRKEGTLGKKIRDAQMQKTPYMIIIGNREVENEVVSVRDRSK 598

Query: 424 GIREDMSLEEVINYASHR 441
           G    MSLE +    S+ 
Sbjct: 599 GDLGSMSLEALKELLSNE 616


>gi|114152266|sp|Q2LTR7|SYP_SYNAS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 578

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 134/251 (53%), Positives = 169/251 (67%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP  +E P DAE+ SH+LMLR GMI + S GIYS+LPLG + L  V  IIREE
Sbjct: 1   MRYSEMFLPTEREIPSDAEVVSHQLMLRAGMIRKLSAGIYSYLPLGYRVLRKVEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q A+LW ESGR++ YGKE+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQEVYLPMVQPAELWQESGRWEHYGKELLRFRDRHDREYCLGPTHEEVITDLVRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IK+YR LP   YQIQ KFRDE+RPRFGVMR REF MKDAYSFD   EG++ SY KMF +
Sbjct: 121 EIKTYRQLPKNLYQIQTKFRDEIRPRFGVMRGREFGMKDAYSFDADEEGAEISYQKMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL+  P+ A+SG IGG  SHEF+V+AD+GE  +        +    E  +  
Sbjct: 181 YKRIFARCGLRFRPVEADSGTIGGSFSHEFMVMADSGEDGLVFCATCS-YAANLEKAEVH 239

Query: 241 DIISLNSIVEQ 251
               +    ++
Sbjct: 240 PPEKMEISNDE 250



 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 72/202 (35%), Positives = 114/202 (56%), Gaps = 2/202 (0%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSAT 301
            L ++ E      +A +D+   +  DS P  +     ARGIEVGH+F  GTKYS  M A+
Sbjct: 367 HLRNVNEGRDFQISAFADLKVARETDSCPRCQGALKFARGIEVGHVFKLGTKYSKAMGAS 426

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +   +GK+  + MG YGIG  R VAA IE +HD  GI+WP  ++P+++ +  +  +D+  
Sbjct: 427 YLDKNGKEQIMIMGCYGIGTGRTVAACIEQNHDENGIVWPMPISPYQVIITPVNMNDKAL 486

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E++Y  L+  G +V  DD  E+ G +F  ADL+G P++V VG K +++ KVE++ R
Sbjct: 487 AETAERLYESLAGKGAEVLLDDRDERAGVKFKDADLIGIPIRVTVGPKKLAEGKVEVRLR 546

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            TG   D+ ++ V         
Sbjct: 547 DTGETSDVQVDSVEKMILRVIE 568


>gi|210623612|ref|ZP_03293938.1| hypothetical protein CLOHIR_01888 [Clostridium hiranonis DSM 13275]
 gi|210153482|gb|EEA84488.1| hypothetical protein CLOHIR_01888 [Clostridium hiranonis DSM 13275]
          Length = 638

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 156/441 (35%), Gaps = 42/441 (9%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   MI +   G    LP G    + +    RE       
Sbjct: 231 LHMLEEAKKRDHRKLGKELGLF--MIPEEGPGFPLMLPKGMALKNALLEYWREVHRAAEY 288

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +E+  P + +  LW  SG +  Y + M  +   +++     P +       ++S + SYR
Sbjct: 289 VEIETPIILNRKLWETSGHWYHYKENMYTVK-IDEEDYAIKPMNCPGGMLYYKSEMHSYR 347

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + P    ++    R EL     G+MR R F   DA+ F L  +        +      I+
Sbjct: 348 DFPMRVAELGRVHRHELSGALHGLMRVRAFTQDDAHIFMLPEQIRDE-IKGVISLIDGIY 406

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G +   +   + P     S E                   +          +++   
Sbjct: 407 KTFGFEYH-LELSTRPEDSMGSDE-----------------EWEAAENGLRGALEELNLP 448

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             + E   A Y    D H   L D +    +     +++     F         AT+ G 
Sbjct: 449 FVVNEGDGAFYGPKIDFH---LTDCIGRTWQCGTIQLDMQLPRQFD--------ATYIGQ 497

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H    +     G++     ++    +     +P  +AP ++ +I I        D 
Sbjct: 498 DGEKHRPVMIHRVAFGSIERFIGILI---EQYAGKFPVWLAPTQVKIIPISDK---YADY 551

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            EK+   L   G  V  D   E++G +   A L   P  VIVG K  +++ + ++ R  G
Sbjct: 552 AEKVRKELFDNGLRVEVDGRVEKVGFKIREAQLEKVPYMVIVGEKEEAENNISVRSRDEG 611

Query: 425 IREDMSLEEVINYASHRFSNN 445
              ++ L + I     +  + 
Sbjct: 612 ELGNVELAKFIEDVQAKVKSR 632


>gi|304391869|ref|ZP_07373811.1| threonyl-tRNA synthetase [Ahrensia sp. R2A130]
 gi|303296098|gb|EFL90456.1| threonyl-tRNA synthetase [Ahrensia sp. R2A130]
          Length = 663

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 152/444 (34%), Gaps = 36/444 (8%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L +L+E   RD      ++ L      +   G+  W   G K   ++ + +R  
Sbjct: 231 KQLKQYLHMLEEAQKRDHRKLGREMDLF--HFQEEGPGVVFWHAKGWKVFQHLVSYMRRR 288

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E++ P +    LW  SG +  Y + M      +++     P +      IF++
Sbjct: 289 IEEHGYDEVNAPQILDKALWETSGHWGWYRENMFTTVTEDERQFAIKPMNCPGHVQIFKN 348

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR LP    +     R E      G+MR R F   DA+ F  TPE  +    ++  
Sbjct: 349 GLRSYRELPVKMAEFGNVHRYEPSGALHGLMRVRGFTQDDAHVFC-TPEQLEEECLRIND 407

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L  +   G   I ++  + P     S E    ++    +V             E    
Sbjct: 408 LILSTYSDFGFGDIVVKLSTRPEKRVGSEEGWDRSEEIMGKVL------------EKIAA 455

Query: 240 DDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           D    + + +     A Y    +     L D++  + +     ++      FG       
Sbjct: 456 DSDGRIKTELNPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVDFALPERFG------- 505

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +   D +      +     G+M     ++     G   +W           + +   
Sbjct: 506 -AFYIDKDSQKQEPVMVHRAICGSMERFIGILIEHFAGHFPLW------ISPLQVVVATI 558

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   E +   L + G  V  D   E+I  +     L   P+ + VG +   +  V 
Sbjct: 559 TSEADPYGEIVAEELREAGLRVETDFRNEKINYKVREHSLAKVPVIIAVGGREAEERTVS 618

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++   +  +  M+L+E +   S  
Sbjct: 619 VRRLGSKHQTSMTLDEAVASLSDE 642


>gi|296101364|ref|YP_003611510.1| prolyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295055823|gb|ADF60561.1| prolyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 572

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+KM+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSHESLQETYDKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDS-SDYAANIE 234



 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 112/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  G KYS  ++A  +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGQGTLMIKRGIEVGHIFQLGDKYSRALNAAVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+YA L  
Sbjct: 443 CYGIGVTRVVAAAIEQNYDERGIVWPDNIAPFQVAILPMNMHKSYRVQELAEKLYAELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R +G ++ +   ++
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDSDEIEYKYRRSGEKQMIKTGDI 562

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 563 LDYLVKAIK 571


>gi|290580052|ref|YP_003484444.1| putative threonyl-tRNA synthetase [Streptococcus mutans NN2025]
 gi|254996951|dbj|BAH87552.1| putative threonyl-tRNA synthetase [Streptococcus mutans NN2025]
          Length = 649

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 156/450 (34%), Gaps = 37/450 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             KY     +   RD      +L L   MI  +  +G+  WLP G      +   I +++
Sbjct: 228 LKKYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRIIERYITDKE 285

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRS 120
             +G   +  P + S DL+  SG +D Y ++M    D  D    +  P +     +++++
Sbjct: 286 VASGYQHVYTPPIASVDLYKTSGHWDHYREDMFPTMDMGDGESFVLRPMNCPHHIEVYKN 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H+ SYR LP    ++ +  R E       ++    +  +     +  +  +  + +    
Sbjct: 346 HVHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVEDEFKRTLQL 405

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDF 239
            + ++    L     R                  D  +T  +   D   +          
Sbjct: 406 IIDVYEDFNLTDYSFRLS--------------YRDPNDTHKYFDDDEMWEKSQTMLKAAM 451

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           DD+       E   A Y    D+   ++  +L  ++ +S   ++    F    ++     
Sbjct: 452 DDMGLDYYEAEGEAAFYGPKLDI---QVKTALGNDETLSTIQLD----FLLPERF----E 500

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+ GADG++H    +    +  M    A +  ++ G    W             I   +
Sbjct: 501 LTYIGADGEEHRPVMIHRGIVSTMERFTAYLIETYKGAFPTWLAPHQVT-----VIPISN 555

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D   ++   L   G     DD  E++  +   +     P Q+IVG K V    V +
Sbjct: 556 EAHIDYAWEVAKELRDHGIRADVDDRNEKMQYKIRQSQTKKVPYQLIVGDKEVESGTVNV 615

Query: 419 KHRLTGIREDMSLEEV-INYASHRFSNNRP 447
           +   +      S+ E   N  +     +RP
Sbjct: 616 RRYGSKQTHTESIAEFRENILADIKRKSRP 645


>gi|70728636|ref|YP_258385.1| prolyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
 gi|114152231|sp|Q4KH98|SYP_PSEF5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|68342935|gb|AAY90541.1| prolyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
          Length = 571

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 116/237 (48%), Positives = 160/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V AI+REE
Sbjct: 1   MRTSQYLLATQKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P+ Q A+LW ESGR++ YG E+LR  DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEVLMPSTQPAELWQESGRWEEYGPELLRFKDRHGRDFCAGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQVTYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +    +  D+    E  
Sbjct: 181 YCNVFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVF-SNGSDYAANIEKA 236



 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGNKYSKAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   ++MG YGIG  RVVAA IE ++D  GIIW D++APF+I+L+ ++   
Sbjct: 424 KCEVLGENGKPVTLEMGCYGIGVSRVVAAAIEQNNDANGIIWSDTLAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  R+A +K+Y+ L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 EQVREATDKLYSELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + + + +V+++   R  
Sbjct: 544 EYKSRTEAEAQALPVADVLSFLQARIR 570


>gi|332201058|gb|EGJ15129.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA47901]
          Length = 647

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 155/444 (34%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTDYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QIKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GAD +DH   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADSEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S++  +       +N 
Sbjct: 619 GQKETQTVSVDNFVQAILADIANK 642


>gi|269468339|gb|EEZ80013.1| threonyl-tRNA synthetase [uncultured SUP05 cluster bacterium]
          Length = 630

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 139/436 (31%), Gaps = 38/436 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD         L    + + + G+  W   G      V   +R       
Sbjct: 231 YLYRLEEAEKRDHRKIGKTQDLF--HMQEEAPGMVFWHEKGWTLYQIVEQYMRSVFRDND 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW +SG +D +G  M       ++     P +      I+   +KSY
Sbjct: 289 YKEVHTPQLIDRTLWEKSGHWDKFGDAMFT-TSSENRDYAVKPMNCPAHIQIYNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  D + F  T    +   +        +
Sbjct: 348 RDLPLRLAEFGSCHRNEPSGTLHGIMRVRNFVQDDGHIFC-TENQIQDEVSTFIDLTFDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +++ ++  + P     S E                   D    S     D    
Sbjct: 407 YKNFGFENVDIKLSTRPEKRVGSDE-----------------VWDRAEASLAEALDAKGI 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    +     L D L    +     ++    F    +      A    
Sbjct: 450 KWELQEGEGAFYGPKIEF---VLKDCLDREWQCGTLQVD----FSMPERLDAHYIAE--- 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + K   V +    +G++     ++   ++G    W             I    +   D 
Sbjct: 500 DNSKQTPVMLHRAIVGSLERFVGILIEHYEGAFPSW------LAPIQAVILNISEKQHDF 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L K G  V  D   E+IG +     +  +P  ++VG + + + ++ ++ R   
Sbjct: 554 VANVEKKLKKQGLRVISDLRNEKIGFKIREHSMQRYPYILVVGGREMENDEISVRKRGGE 613

Query: 425 IREDMSLEEVINYASH 440
               MS+E  +     
Sbjct: 614 DLGSMSIEAFVKLVKE 629


>gi|42783753|ref|NP_981000.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|206969938|ref|ZP_03230892.1| threonyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|218234238|ref|YP_002369371.1| threonyl-tRNA synthetase [Bacillus cereus B4264]
 gi|228923319|ref|ZP_04086607.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228954844|ref|ZP_04116864.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960844|ref|ZP_04122479.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229048283|ref|ZP_04193851.1| Threonyl-tRNA synthetase [Bacillus cereus AH676]
 gi|229072077|ref|ZP_04205286.1| Threonyl-tRNA synthetase [Bacillus cereus F65185]
 gi|229081828|ref|ZP_04214320.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|229112040|ref|ZP_04241583.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|229129859|ref|ZP_04258825.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|229147134|ref|ZP_04275493.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|229152770|ref|ZP_04280953.1| Threonyl-tRNA synthetase [Bacillus cereus m1550]
 gi|229180894|ref|ZP_04308229.1| Threonyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|229192776|ref|ZP_04319734.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|229198724|ref|ZP_04325422.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
 gi|296505048|ref|YP_003666748.1| threonyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|42739683|gb|AAS43608.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|206735626|gb|EDZ52794.1| threonyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|218162195|gb|ACK62187.1| threonine--tRNA ligase [Bacillus cereus B4264]
 gi|228584746|gb|EEK42866.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228590615|gb|EEK48476.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228602451|gb|EEK59937.1| Threonyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|228630590|gb|EEK87236.1| Threonyl-tRNA synthetase [Bacillus cereus m1550]
 gi|228636383|gb|EEK92854.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|228653550|gb|EEL09422.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|228671363|gb|EEL26664.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228701416|gb|EEL53910.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|228711011|gb|EEL62977.1| Threonyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228723008|gb|EEL74385.1| Threonyl-tRNA synthetase [Bacillus cereus AH676]
 gi|228798866|gb|EEM45845.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228804833|gb|EEM51432.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228836273|gb|EEM81626.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|296326100|gb|ADH09028.1| threonyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|324328469|gb|ADY23729.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 645

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 169/433 (39%), Gaps = 30/433 (6%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             GL++   R             +   ADT   + +   +  +          D++    
Sbjct: 416 DFGLENYSFRLS-----------YRDPADTK--KYYADDEMWEKAQGMLKEAMDEMGLDY 462

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV   ++  +L +++ +S   ++    F    ++      ++ G D
Sbjct: 463 YEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELSYVGED 511

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK H   +     G +  +   +    +     +P  +AP ++ +I +    QV  D  +
Sbjct: 512 GKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSP--QVHLDYAK 567

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++       
Sbjct: 568 KVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQKS 627

Query: 427 EDMSLEEVINYAS 439
           E ++L+  ++   
Sbjct: 628 ETIALDAFVDMIK 640


>gi|329928815|ref|ZP_08282654.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328937458|gb|EGG33879.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 645

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 168/442 (38%), Gaps = 37/442 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L + T       +G+  WLP G K    +   I + + R G 
Sbjct: 235 LRLLEEAKKRDHRKLGKELQMFT-FSQLVGQGLPIWLPNGAKLRRTLERYIVDMEERLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + +L+  SG ++ Y ++M    + +++ ++  P +      +++S + SYR
Sbjct: 294 QHVYTPVLGNVELYKTSGHWEHYQEDMFPKMEMDNEELVLRPMNCPHHMMVYKSDMHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ ++ R E+     G+ R R   + D++ F   P+  K  + ++    + ++
Sbjct: 354 DLPIRIAELGMQHRYEMSGALTGLHRVRAMTLNDSHIFCR-PDQIKEEFARVIQLIMTVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS-KDFMDFPIPSENTDFDDIIS 244
              G+     R                  D  +T+ +    +  +          + +  
Sbjct: 413 KDFGIHDYRFRLS--------------YRDPQDTEKYFQNDEMWEMSQRMLREVVESLDM 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  +L + + +S   ++    F    ++       + G
Sbjct: 459 PFYEAEGEAAFYGPKLDV---QIRTALGKEETLSTVQLD----FLLPERF----ELEYVG 507

Query: 305 ADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H   +   GI G M    A +  +  G   +W   V    I + N         D
Sbjct: 508 DDGQKHRPVVIHRGILGTMERFTAFLLENFAGALPLWLSPVQVKVIPVSN------AFED 561

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G  V  D   E++G +   A L   P   IVG    S   V ++ R  
Sbjct: 562 YAKEVAEKLQFAGISVEPDLRNEKLGYKIREAQLEKIPYMFIVGENEKSAGAVSVRKRGE 621

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G      L+E+I       + +
Sbjct: 622 GDIGAQPLDEIILKLREEINTH 643


>gi|284037110|ref|YP_003387040.1| threonyl-tRNA synthetase [Spirosoma linguale DSM 74]
 gi|283816403|gb|ADB38241.1| threonyl-tRNA synthetase [Spirosoma linguale DSM 74]
          Length = 647

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 156/442 (35%), Gaps = 38/442 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L      +   G+  WLP G    + +   +R+ Q R G
Sbjct: 237 YLFLLEEAKKRDHRKLGKELELFA-FSEKVGAGLPLWLPKGTVLRERLENFLRKAQVRAG 295

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +  P + S  L+V SG ++ YG++  +       ++  +  P +     +I+++  +
Sbjct: 296 YSPVVTPHIGSKQLYVTSGHWEKYGEDSFQPIRTPDPNEEFLLKPMNCPHHCEIYKTKPR 355

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +    +R E      G+ R R F   DA+ F   P+  K  + K+    L
Sbjct: 356 SYRDLPLRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCR-PDQVKEEFMKVIDLVL 414

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F+ LG      +                  D      +   D +     S   +    
Sbjct: 415 YVFNTLGFSDYSAQISLR--------------DPENKTKYIGSDDLWEKAESAIIEAAAE 460

Query: 243 ISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             L ++ E    A Y    D     + D++    ++    ++      F           
Sbjct: 461 KGLPTVTELGEAAFYGPKLDFM---VRDAIGRKWQLGTIQVDYNLPNRF--------ELE 509

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GAD + H    +     G+M    A++  +  G   +W           I I    + 
Sbjct: 510 YIGADNQKHRPVMIHRAPFGSMERFIAILIENSGGNFPLW------LSPDQIAILPISEK 563

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D    ++  L +     F D   E+IG +   A++   P  +IVG K  ++  V ++ 
Sbjct: 564 YEDYANDLFFSLQENDIRGFVDLRDEKIGRKIRDAEVNKVPYMLIVGEKEAAEGTVSVRR 623

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           +  G    M + + I       
Sbjct: 624 KGQGDLGSMPIADFIQTFKREV 645


>gi|191167053|ref|ZP_03028875.1| prolyl-tRNA synthetase [Escherichia coli B7A]
 gi|309796373|ref|ZP_07690782.1| prolyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|190902946|gb|EDV62673.1| prolyl-tRNA synthetase [Escherichia coli B7A]
 gi|308120077|gb|EFO57339.1| prolyl-tRNA synthetase [Escherichia coli MS 145-7]
          Length = 572

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 133/294 (45%), Positives = 178/294 (60%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E  +  
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIELAEAI 239

Query: 241 DIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                 +   Q       P A T     E+    + +  +        G  F  
Sbjct: 240 APKEPRAAAAQEMTLVDTPNAKTIAELVEQFNLPIEKTVKTLLVKAVEGSSFPL 293



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 112/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           + Y   +  
Sbjct: 563 VEYLVKQIK 571


>gi|228994292|ref|ZP_04154183.1| Threonyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228765442|gb|EEM14105.1| Threonyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 641

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 154/443 (34%), Gaps = 42/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + + +RE Q    
Sbjct: 235 YLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIVRNELESFLREIQQNYD 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW ESG +D Y   M   ++ ++K+    P +      IF++ + SY
Sbjct: 293 YQEVRTPIMMNQGLWEESGHWDHYKDNM-YFSEVDNKSFALKPMNCPGHMLIFKNKLHSY 351

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G++R R F   DA+   +TPE  +     +      +
Sbjct: 352 RDLPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIESEIKSVLKQIDYV 410

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P       E    A++                 S       +  
Sbjct: 411 YRTFGFEYE-VELSTRPEDSMGDDELWNQAES-----------------SLENVLKSLNY 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   + D+L  + +     ++    F    K+       +  
Sbjct: 453 NYRVNEGDGAFYGPKIDFH---IKDALQRSHQCGTVQLD----FQMPEKFD----LNYID 501

Query: 305 ADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              +     +    +     R +  +IE                  + +  I   +QV  
Sbjct: 502 ERNEKRRPVVIHRAVLGSFDRFLGILIEHFGGAFPTWLAP------VQIKVIPVSNQVHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              ++I  +L  VG     D   E++G +   A L   P  +++G K + +  V ++   
Sbjct: 556 QYTKEIEEKLKSVGLRAERDARSEKLGYKIREAQLQKIPYILVIGDKEMENGSVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
               E +SL   +        N 
Sbjct: 616 EEKSEVVSLSAFMESIRKEVYNK 638


>gi|332282869|ref|ZP_08395282.1| prolyl-tRNA synthetase [Shigella sp. D9]
 gi|332105221|gb|EGJ08567.1| prolyl-tRNA synthetase [Shigella sp. D9]
          Length = 590

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 19  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 78

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 79  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 138

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 139 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 199 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 252



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 112/187 (59%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 403 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 462

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 463 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 522

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++ 
Sbjct: 523 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVE 582

Query: 437 YASHRFS 443
           Y   +  
Sbjct: 583 YLVKQIK 589


>gi|320180897|gb|EFW55819.1| prolyl-tRNA synthetase [Shigella boydii ATCC 9905]
          Length = 572

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 112/187 (59%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++ 
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVE 564

Query: 437 YASHRFS 443
           Y   +  
Sbjct: 565 YLVKQIK 571


>gi|309700402|emb|CBI99691.1| prolyl-tRNA synthetase [Escherichia coli ETEC H10407]
          Length = 572

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 112/187 (59%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R    ++ +   ++++
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNCEKQLIKTGDIVD 564

Query: 437 YASHRFS 443
           Y   +  
Sbjct: 565 YLVKQIK 571


>gi|300920118|ref|ZP_07136571.1| prolyl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300412852|gb|EFJ96162.1| prolyl-tRNA synthetase [Escherichia coli MS 115-1]
          Length = 572

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 112/187 (59%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++ 
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVE 564

Query: 437 YASHRFS 443
           Y   +  
Sbjct: 565 YLVKQIK 571


>gi|260866343|ref|YP_003232745.1| prolyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|257762699|dbj|BAI34194.1| prolyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
          Length = 572

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/189 (35%), Positives = 112/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           I Y   +  
Sbjct: 563 IEYLVKQIK 571


>gi|254037614|ref|ZP_04871691.1| prolyl-tRNA synthetase [Escherichia sp. 1_1_43]
 gi|226840720|gb|EEH72722.1| prolyl-tRNA synthetase [Escherichia sp. 1_1_43]
          Length = 590

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 19  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 78

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 79  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 138

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 139 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 199 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 252



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 112/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 401 EVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 460

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 461 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 520

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 521 QGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 580

Query: 435 INYASHRFS 443
           + Y   +  
Sbjct: 581 VEYLVKQIK 589


>gi|218703449|ref|YP_002410968.1| prolyl-tRNA synthetase [Escherichia coli UMN026]
 gi|293403264|ref|ZP_06647361.1| prolyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|293408287|ref|ZP_06652127.1| prolyl-tRNA synthetase [Escherichia coli B354]
 gi|298378800|ref|ZP_06988684.1| prolyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|300900763|ref|ZP_07118909.1| prolyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|301025919|ref|ZP_07189405.1| prolyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|331661569|ref|ZP_08362493.1| proline--tRNA ligase [Escherichia coli TA143]
 gi|226701283|sp|B7N862|SYP_ECOLU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218430546|emb|CAR11412.1| prolyl-tRNA synthetase [Escherichia coli UMN026]
 gi|284919970|emb|CBG33025.1| prolyl-tRNA synthetase [Escherichia coli 042]
 gi|291430179|gb|EFF03193.1| prolyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|291472538|gb|EFF15020.1| prolyl-tRNA synthetase [Escherichia coli B354]
 gi|298281134|gb|EFI22635.1| prolyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|300355748|gb|EFJ71618.1| prolyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|300395774|gb|EFJ79312.1| prolyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|331061484|gb|EGI33447.1| proline--tRNA ligase [Escherichia coli TA143]
 gi|332341528|gb|AEE54862.1| prolyl-tRNA synthetase ProS [Escherichia coli UMNK88]
          Length = 572

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 113/187 (60%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++++
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVD 564

Query: 437 YASHRFS 443
           Y   +  
Sbjct: 565 YLVKQIK 571


>gi|218693660|ref|YP_002401327.1| prolyl-tRNA synthetase [Escherichia coli 55989]
 gi|256021628|ref|ZP_05435493.1| prolyl-tRNA synthetase [Shigella sp. D9]
 gi|293476853|ref|ZP_06665261.1| prolyl-tRNA synthetase [Escherichia coli B088]
 gi|300921804|ref|ZP_07137964.1| prolyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|301325160|ref|ZP_07218690.1| prolyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|254782900|sp|B7LHA4|SYP_ECO55 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218350392|emb|CAU96077.1| prolyl-tRNA synthetase [Escherichia coli 55989]
 gi|291321306|gb|EFE60748.1| prolyl-tRNA synthetase [Escherichia coli B088]
 gi|300421799|gb|EFK05110.1| prolyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|300847966|gb|EFK75726.1| prolyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|323935035|gb|EGB31408.1| prolyl-tRNA synthetase [Escherichia coli E1520]
          Length = 572

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 112/187 (59%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++ 
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVE 564

Query: 437 YASHRFS 443
           Y   +  
Sbjct: 565 YLVKQIK 571


>gi|82775586|ref|YP_401933.1| prolyl-tRNA synthetase [Shigella dysenteriae Sd197]
 gi|114152251|sp|Q32JR3|SYP_SHIDS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81239734|gb|ABB60444.1| proline tRNA synthetase [Shigella dysenteriae Sd197]
          Length = 572

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 112/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           + Y   +  
Sbjct: 563 VEYLVKQIK 571


>gi|16128187|ref|NP_414736.1| prolyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655]
 gi|89107075|ref|AP_000855.1| prolyl-tRNA synthetase [Escherichia coli str. K-12 substr. W3110]
 gi|170079831|ref|YP_001729151.1| prolyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|238899593|ref|YP_002925389.1| prolyl-tRNA synthetase [Escherichia coli BW2952]
 gi|34395980|sp|P16659|SYP_ECOLI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Global RNA
           synthesis factor; AltName: Full=Proline--tRNA ligase;
           Short=ProRS
 gi|226701282|sp|B1XD64|SYP_ECODH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511593|sp|C4ZRT7|SYP_ECOBW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|1552770|gb|AAB08622.1| proline-tRNA ligase [Escherichia coli]
 gi|1786392|gb|AAC73305.1| prolyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655]
 gi|85674379|dbj|BAA77870.2| prolyl-tRNA synthetase [Escherichia coli str. K12 substr. W3110]
 gi|169887666|gb|ACB01373.1| prolyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|238863283|gb|ACR65281.1| prolyl-tRNA synthetase [Escherichia coli BW2952]
 gi|260450602|gb|ACX41024.1| prolyl-tRNA synthetase [Escherichia coli DH1]
 gi|315134885|dbj|BAJ42044.1| prolyl-tRNA synthetase [Escherichia coli DH1]
          Length = 572

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 112/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+   + +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGQGRLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           + Y   +  
Sbjct: 563 VEYLVKQIK 571


>gi|15799876|ref|NP_285888.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 EDL933]
 gi|15829450|ref|NP_308223.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|168752178|ref|ZP_02777200.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|168765280|ref|ZP_02790287.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|168769963|ref|ZP_02794970.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|168777697|ref|ZP_02802704.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|168782925|ref|ZP_02807932.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|168789305|ref|ZP_02814312.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|168802460|ref|ZP_02827467.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|195939891|ref|ZP_03085273.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024]
 gi|208809448|ref|ZP_03251785.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208812619|ref|ZP_03253948.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208821168|ref|ZP_03261488.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209398549|ref|YP_002268803.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|217324314|ref|ZP_03440398.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254791327|ref|YP_003076164.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|261226949|ref|ZP_05941230.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255353|ref|ZP_05947886.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK966]
 gi|291281017|ref|YP_003497835.1| Prolyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|81848971|sp|Q8X8W2|SYP_ECO57 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226731431|sp|B5Z0H4|SYP_ECO5E RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|12512925|gb|AAG54496.1|AE005195_5 proline tRNA synthetase [Escherichia coli O157:H7 str. EDL933]
 gi|13359652|dbj|BAB33619.1| proline tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|187767123|gb|EDU30967.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|188013912|gb|EDU52034.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|188999651|gb|EDU68637.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189361055|gb|EDU79474.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|189364925|gb|EDU83341.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|189371068|gb|EDU89484.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|189375548|gb|EDU93964.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|208729249|gb|EDZ78850.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208733896|gb|EDZ82583.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208741291|gb|EDZ88973.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209159949|gb|ACI37382.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|209745624|gb|ACI71119.1| proline tRNA synthetase [Escherichia coli]
 gi|209745626|gb|ACI71120.1| proline tRNA synthetase [Escherichia coli]
 gi|209745628|gb|ACI71121.1| proline tRNA synthetase [Escherichia coli]
 gi|209745630|gb|ACI71122.1| proline tRNA synthetase [Escherichia coli]
 gi|209745632|gb|ACI71123.1| proline tRNA synthetase [Escherichia coli]
 gi|217320535|gb|EEC28959.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254590727|gb|ACT70088.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|290760890|gb|ADD54851.1| Prolyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|320190279|gb|EFW64929.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212]
 gi|320640001|gb|EFX09586.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. G5101]
 gi|320644771|gb|EFX13815.1| prolyl-tRNA synthetase [Escherichia coli O157:H- str. 493-89]
 gi|320652927|gb|EFX21165.1| prolyl-tRNA synthetase [Escherichia coli O157:H- str. H 2687]
 gi|320658315|gb|EFX26044.1| prolyl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320663625|gb|EFX30909.1| prolyl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668938|gb|EFX35733.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61]
 gi|326339750|gb|EGD63558.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. 1044]
 gi|326345084|gb|EGD68827.1| prolyl-tRNA synthetase [Escherichia coli O157:H7 str. 1125]
          Length = 572

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 112/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           + Y   +  
Sbjct: 563 VEYLVKQIK 571


>gi|194435019|ref|ZP_03067260.1| prolyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|300902015|ref|ZP_07120042.1| prolyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|301305332|ref|ZP_07211428.1| prolyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|331651100|ref|ZP_08352128.1| proline--tRNA ligase [Escherichia coli M718]
 gi|331671699|ref|ZP_08372497.1| proline--tRNA ligase [Escherichia coli TA280]
 gi|194416755|gb|EDX32883.1| prolyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|300405901|gb|EFJ89439.1| prolyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300839437|gb|EFK67197.1| prolyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|315254998|gb|EFU34966.1| prolyl-tRNA synthetase [Escherichia coli MS 85-1]
 gi|331051554|gb|EGI23603.1| proline--tRNA ligase [Escherichia coli M718]
 gi|331071544|gb|EGI42901.1| proline--tRNA ligase [Escherichia coli TA280]
 gi|332095137|gb|EGJ00169.1| prolyl-tRNA synthetase [Shigella boydii 5216-82]
 gi|332097597|gb|EGJ02574.1| prolyl-tRNA synthetase [Shigella dysenteriae 155-74]
          Length = 572

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 112/187 (59%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 385 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 445 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++ 
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVE 564

Query: 437 YASHRFS 443
           Y   +  
Sbjct: 565 YLVKQIK 571


>gi|194428300|ref|ZP_03060842.1| prolyl-tRNA synthetase [Escherichia coli B171]
 gi|194413675|gb|EDX29955.1| prolyl-tRNA synthetase [Escherichia coli B171]
          Length = 572

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++  + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLLDDRKERPGVMFADMELIGIPHTIVLSDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           + Y   +  
Sbjct: 563 VEYLVKQIK 571


>gi|30061751|ref|NP_835922.1| prolyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|56479623|ref|NP_706140.2| prolyl-tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|74310815|ref|YP_309234.1| prolyl-tRNA synthetase [Shigella sonnei Ss046]
 gi|82542793|ref|YP_406740.1| prolyl-tRNA synthetase [Shigella boydii Sb227]
 gi|157159661|ref|YP_001456979.1| prolyl-tRNA synthetase [Escherichia coli HS]
 gi|162139361|ref|YP_687766.2| prolyl-tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|170021452|ref|YP_001726406.1| prolyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|187730943|ref|YP_001878997.1| prolyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|188494186|ref|ZP_03001456.1| prolyl-tRNA synthetase [Escherichia coli 53638]
 gi|193063143|ref|ZP_03044234.1| prolyl-tRNA synthetase [Escherichia coli E22]
 gi|193067639|ref|ZP_03048606.1| prolyl-tRNA synthetase [Escherichia coli E110019]
 gi|194439920|ref|ZP_03071982.1| prolyl-tRNA synthetase [Escherichia coli 101-1]
 gi|209917387|ref|YP_002291471.1| prolyl-tRNA synthetase [Escherichia coli SE11]
 gi|218552775|ref|YP_002385688.1| prolyl-tRNA synthetase [Escherichia coli IAI1]
 gi|253774778|ref|YP_003037609.1| prolyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160314|ref|YP_003043422.1| prolyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|256025507|ref|ZP_05439372.1| prolyl-tRNA synthetase [Escherichia sp. 4_1_40B]
 gi|260842426|ref|YP_003220204.1| prolyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|260853405|ref|YP_003227296.1| prolyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|293418080|ref|ZP_06660702.1| prolyl-tRNA synthetase [Escherichia coli B185]
 gi|297519907|ref|ZP_06938293.1| prolyl-tRNA synthetase [Escherichia coli OP50]
 gi|300820114|ref|ZP_07100286.1| prolyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|300825388|ref|ZP_07105464.1| prolyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300932153|ref|ZP_07147436.1| prolyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300949771|ref|ZP_07163746.1| prolyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300956080|ref|ZP_07168404.1| prolyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|301028690|ref|ZP_07191910.1| prolyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|301646520|ref|ZP_07246394.1| prolyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|307136795|ref|ZP_07496151.1| prolyl-tRNA synthetase [Escherichia coli H736]
 gi|307311357|ref|ZP_07590999.1| prolyl-tRNA synthetase [Escherichia coli W]
 gi|331640649|ref|ZP_08341797.1| proline--tRNA ligase [Escherichia coli H736]
 gi|331666440|ref|ZP_08367321.1| proline--tRNA ligase [Escherichia coli TA271]
 gi|331680776|ref|ZP_08381435.1| proline--tRNA ligase [Escherichia coli H591]
 gi|81839318|sp|Q83MC8|SYP_SHIFL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152250|sp|Q325U6|SYP_SHIBS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152252|sp|Q3Z5G3|SYP_SHISS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148887036|sp|Q0T815|SYP_SHIF8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980120|sp|A7ZWE2|SYP_ECOHS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189083498|sp|B1IQE6|SYP_ECOLC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701281|sp|B7M1Z9|SYP_ECO8A RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701284|sp|B6HZR3|SYP_ECOSE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701339|sp|B2U338|SYP_SHIB3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|30039993|gb|AAP15727.1| proline tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|56383174|gb|AAN41847.2| proline tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|73854292|gb|AAZ86999.1| proline tRNA synthetase [Shigella sonnei Ss046]
 gi|81244204|gb|ABB64912.1| proline tRNA synthetase [Shigella boydii Sb227]
 gi|157065341|gb|ABV04596.1| prolyl-tRNA synthetase [Escherichia coli HS]
 gi|169756380|gb|ACA79079.1| prolyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|187427935|gb|ACD07209.1| prolyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|188489385|gb|EDU64488.1| prolyl-tRNA synthetase [Escherichia coli 53638]
 gi|192931051|gb|EDV83654.1| prolyl-tRNA synthetase [Escherichia coli E22]
 gi|192959051|gb|EDV89487.1| prolyl-tRNA synthetase [Escherichia coli E110019]
 gi|194421166|gb|EDX37191.1| prolyl-tRNA synthetase [Escherichia coli 101-1]
 gi|209910646|dbj|BAG75720.1| prolyl-tRNA synthase [Escherichia coli SE11]
 gi|218359543|emb|CAQ97083.1| prolyl-tRNA synthetase [Escherichia coli IAI1]
 gi|242376026|emb|CAQ30709.1| prolyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|253325822|gb|ACT30424.1| prolyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972215|gb|ACT37886.1| prolyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|253976424|gb|ACT42094.1| prolyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|257752054|dbj|BAI23556.1| prolyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|257757573|dbj|BAI29070.1| prolyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|281599550|gb|ADA72534.1| putative prolyl-tRNA synthetase [Shigella flexneri 2002017]
 gi|291430798|gb|EFF03796.1| prolyl-tRNA synthetase [Escherichia coli B185]
 gi|299878289|gb|EFI86500.1| prolyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|300317074|gb|EFJ66858.1| prolyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|300450836|gb|EFK14456.1| prolyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300460090|gb|EFK23583.1| prolyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300522148|gb|EFK43217.1| prolyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300527328|gb|EFK48390.1| prolyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|301075273|gb|EFK90079.1| prolyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|306908336|gb|EFN38834.1| prolyl-tRNA synthetase [Escherichia coli W]
 gi|315059413|gb|ADT73740.1| prolyl-tRNA synthetase [Escherichia coli W]
 gi|315616320|gb|EFU96938.1| prolyl-tRNA synthetase [Escherichia coli 3431]
 gi|320173324|gb|EFW48527.1| prolyl-tRNA synthetase [Shigella dysenteriae CDC 74-1112]
 gi|320186617|gb|EFW61342.1| prolyl-tRNA synthetase [Shigella flexneri CDC 796-83]
 gi|320200278|gb|EFW74864.1| prolyl-tRNA synthetase [Escherichia coli EC4100B]
 gi|323157966|gb|EFZ44068.1| prolyl-tRNA synthetase [Escherichia coli EPECa14]
 gi|323165899|gb|EFZ51681.1| prolyl-tRNA synthetase [Shigella sonnei 53G]
 gi|323170987|gb|EFZ56636.1| prolyl-tRNA synthetase [Escherichia coli LT-68]
 gi|323380028|gb|ADX52296.1| prolyl-tRNA synthetase [Escherichia coli KO11]
 gi|323939929|gb|EGB36127.1| prolyl-tRNA synthetase [Escherichia coli E482]
 gi|323945673|gb|EGB41722.1| prolyl-tRNA synthetase [Escherichia coli H120]
 gi|323959956|gb|EGB55603.1| prolyl-tRNA synthetase [Escherichia coli H489]
 gi|323970674|gb|EGB65930.1| prolyl-tRNA synthetase [Escherichia coli TA007]
 gi|324019415|gb|EGB88634.1| prolyl-tRNA synthetase [Escherichia coli MS 117-3]
 gi|324118316|gb|EGC12211.1| prolyl-tRNA synthetase [Escherichia coli E1167]
 gi|331040395|gb|EGI12602.1| proline--tRNA ligase [Escherichia coli H736]
 gi|331066651|gb|EGI38528.1| proline--tRNA ligase [Escherichia coli TA271]
 gi|331072239|gb|EGI43575.1| proline--tRNA ligase [Escherichia coli H591]
 gi|332762067|gb|EGJ92338.1| prolyl-tRNA synthetase [Shigella flexneri 2747-71]
 gi|332765044|gb|EGJ95272.1| prolyl-tRNA synthetase [Shigella flexneri K-671]
 gi|332768698|gb|EGJ98878.1| prolyl-tRNA synthetase [Shigella flexneri 2930-71]
 gi|333009265|gb|EGK28721.1| prolyl-tRNA synthetase [Shigella flexneri K-218]
 gi|333010690|gb|EGK30123.1| prolyl-tRNA synthetase [Shigella flexneri VA-6]
 gi|333011036|gb|EGK30455.1| prolyl-tRNA synthetase [Shigella flexneri K-272]
 gi|333021831|gb|EGK41080.1| prolyl-tRNA synthetase [Shigella flexneri K-227]
 gi|333022223|gb|EGK41462.1| prolyl-tRNA synthetase [Shigella flexneri K-304]
          Length = 572

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 112/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           + Y   +  
Sbjct: 563 VEYLVKQIK 571


>gi|157147374|ref|YP_001454693.1| prolyl-tRNA synthetase [Citrobacter koseri ATCC BAA-895]
 gi|166980115|sp|A8AL94|SYP_CITK8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157084579|gb|ABV14257.1| hypothetical protein CKO_03172 [Citrobacter koseri ATCC BAA-895]
          Length = 572

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG+ SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDVIFSDS-SDYAANIE 234



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y  L  
Sbjct: 443 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYGELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   E+
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGEI 562

Query: 435 INYASHRFS 443
           +++      
Sbjct: 563 VDFLVKAIK 571


>gi|116515338|ref|YP_816901.1| threonyl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|161410743|ref|NP_359065.2| threonyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|73621971|sp|Q8DNX8|SYT_STRR6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122278253|sp|Q04JD7|SYT_STRP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116075914|gb|ABJ53634.1| threonyl-tRNA synthetase [Streptococcus pneumoniae D39]
          Length = 647

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 156/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 VSGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTDYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QIKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG+DH   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S++  +       +N 
Sbjct: 619 GQKETQTVSVDNFVQAILADIANK 642


>gi|9955215|pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With The Ligand Threonine
 gi|9955216|pdb|1EVK|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With The Ligand Threonine
 gi|9955217|pdb|1EVL|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With A Threonyl Adenylate Analog
 gi|9955218|pdb|1EVL|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With A Threonyl Adenylate Analog
 gi|9955219|pdb|1EVL|C Chain C, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With A Threonyl Adenylate Analog
 gi|9955220|pdb|1EVL|D Chain D, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With A Threonyl Adenylate Analog
 gi|12084202|pdb|1FYF|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase Complexed With A Seryl Adenylate Analog
 gi|12084203|pdb|1FYF|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase Complexed With A Seryl Adenylate Analog
 gi|20664135|pdb|1KOG|A Chain A, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664136|pdb|1KOG|B Chain B, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664137|pdb|1KOG|C Chain C, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664138|pdb|1KOG|D Chain D, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664139|pdb|1KOG|E Chain E, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664140|pdb|1KOG|F Chain F, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664141|pdb|1KOG|G Chain G, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 gi|20664142|pdb|1KOG|H Chain H, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
          Length = 401

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/432 (18%), Positives = 140/432 (32%), Gaps = 40/432 (9%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      +L L    + + + G+  W   G      +   +R +       E+  P + 
Sbjct: 1   RDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMM 58

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
              LW ++G +D+Y   M       ++     P +      IF   +KSYR+LP    + 
Sbjct: 59  DRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEF 117

Query: 136 QLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               R+E      G+MR R F   DA+ F    +      N        ++   G + I 
Sbjct: 118 GSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE-VNGCIRLVYDMYSTFGFEKIV 176

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           ++  + P     S E                   D          ++            A
Sbjct: 177 VKLSTRPEKRIGSDE-----------------MWDRAEADLAVALEENNIPFEYQLGEGA 219

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQ 313
            Y    +     L+D L    +     ++    F   ++ S    A++ G D +    V 
Sbjct: 220 FYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVGEDNERKVPVM 268

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G+M     ++     G    W   V    +++           +   ++  +LS
Sbjct: 269 IHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNIT------DSQSEYVNELTQKLS 322

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G  V  D   E+IG +     L   P  ++ G K V   KV ++ R       M + E
Sbjct: 323 NAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNE 382

Query: 434 VINYASHRFSNN 445
           VI        + 
Sbjct: 383 VIEKLQQEIRSR 394


>gi|315171869|gb|EFU15886.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1342]
          Length = 660

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 246 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 303

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 304 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 363

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 364 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 423

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 424 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 470 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 518

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 519 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 575

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 576 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 635

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 636 SKETSVEDLSIFIDSMAAEVHNY 658


>gi|298694953|gb|ADI98175.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|323440773|gb|EGA98482.1| threonyl-tRNA synthetase [Staphylococcus aureus O11]
 gi|323442928|gb|EGB00551.1| threonyl-tRNA synthetase [Staphylococcus aureus O46]
          Length = 645

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 161/445 (36%), Gaps = 33/445 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQMLEERKERDHRKIGKELELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++   M+  P +      I+ +  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++    +
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMII 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDD 241
            ++   G +    R                  D  + + +   D   +          D+
Sbjct: 408 DVYKDFGFEDYSFRLS--------------YRDPEDKEKYFDDDDMWNKAENMLKEAADE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  ++ + + +S   ++    F    ++      T
Sbjct: 454 LGLSYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERFD----LT 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G DG+ H   +     G +  +   +    +     +P  +AP ++ +I +     + 
Sbjct: 503 YIGQDGEHHRPVVIHR--GVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNV--DLH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G  V  D+  E++G +   A +   P Q++VG K V +++V ++  
Sbjct: 559 YDYARQLQDELKSQGVRVSIDERNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +  +E +  +E I          +
Sbjct: 619 GSQDQETVEKDEFIWNLVDEIRLKK 643


>gi|259047194|ref|ZP_05737595.1| threonine--tRNA ligase [Granulicatella adiacens ATCC 49175]
 gi|259036244|gb|EEW37499.1| threonine--tRNA ligase [Granulicatella adiacens ATCC 49175]
          Length = 647

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 166/446 (37%), Gaps = 33/446 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           FL + +E   RD      +L L   MI  +   G+  WLP G      +   I +++   
Sbjct: 229 FLKMREEAKERDHRKLGKELDLF--MISQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIK 123
           G   +  P +    L+  SG +  Y ++M    D  D   ++  P +      ++++HI 
Sbjct: 287 GYQHVYTPVMADVGLYKTSGHWAHYQEDMFPPMDMGDGELLVLRPMNCPHHMMVYKNHIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + ++      
Sbjct: 347 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRILDLIRE 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    +K    R            +     D  E          +          D++ 
Sbjct: 407 VYSDFNVKDYRFRLS-----YRDPEDKHKYFDDDEM--------WNKAETMLKEAMDEMG 453

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y    D+   +   ++   + +S   ++    F    ++      T+ 
Sbjct: 454 LEYFEAIGEAAFYGPKLDI---QFRTAMGLEETMSTIQLD----FLLPERFD----LTYV 502

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           G DG + +  +  +  G +      +    +     +P  +AP + ++I +    +   D
Sbjct: 503 GEDGDNTHRPVVIHR-GVVSTAERFVAYLIEEYKGAFPTWLAPVQATIIPVSV--EHHYD 559

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           A  ++  +++++G  V  DD  E++G +   +     P Q+++G K V +  V ++   +
Sbjct: 560 AARELKEKMARLGMRVELDDRNEKMGYKIRASQTQKIPYQLVIGDKEVEEGTVTVRRYGS 619

Query: 424 GIREDMSLEEVINYASHRFSN-NRPV 448
              + MS+E  + Y     +N +RP+
Sbjct: 620 KETKSMSIEAYLEYVQREIANFSRPL 645


>gi|237729500|ref|ZP_04559981.1| prolyl-tRNA synthetase [Citrobacter sp. 30_2]
 gi|226909229|gb|EEH95147.1| prolyl-tRNA synthetase [Citrobacter sp. 30_2]
          Length = 590

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 167/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 19  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 78

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D++ + GPTHEEV+TD+ R+
Sbjct: 79  MNNAGAIEVLMPVVQPSELWEESGRWEQYGPELLRIADRGDRSFVLGPTHEEVITDLIRN 138

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 139 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 199 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDS-SDYAANIE 252



 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/189 (36%), Positives = 110/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A  +G DG++  + MG
Sbjct: 401 EVADIRNVVAGDPSPDGKGTLMIKRGIEVGHIFQLGTKYSEAMKAAVQGEDGRNQTLTMG 460

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+YA L  
Sbjct: 461 CYGIGVTRVVAAAIEQNFDDRGIVWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELRA 520

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G +E +   ++
Sbjct: 521 QGIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKELIKTGDI 580

Query: 435 INYASHRFS 443
           +++      
Sbjct: 581 VDFLVKAIK 589


>gi|322419731|ref|YP_004198954.1| threonyl-tRNA synthetase [Geobacter sp. M18]
 gi|320126118|gb|ADW13678.1| threonyl-tRNA synthetase [Geobacter sp. M18]
          Length = 636

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 151/443 (34%), Gaps = 40/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  W P G      +    R+E  + G
Sbjct: 232 YLARIEEAKKRDHRKLGKELDLFS-FNDEVGAGLVIWHPKGAMLRTILEDFERKEHLKRG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   +LW  SG Y++Y + M      +++     P +      I+RS ++SY
Sbjct: 291 YDIVVGPQILKTELWQRSGHYENYRENM-YFTTVDEQGYGVKPMNCLAHMMIYRSQLRSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  ++++    R E      G++R R F   DA+    TPE        +      +
Sbjct: 350 RDLPLRYFELGTVHRHERAGVLHGLLRVRGFTQDDAHILC-TPEQLDAEIKGVIQFVTEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G                   EF +   T   +   S D  +    +      D   
Sbjct: 409 MGIFG------------------FEFEMELSTRPEKSIGSDDAWELATSALLNALKDSGR 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   KL D+L    + +    +    F    ++      T+  
Sbjct: 451 PFEINEGDGAFYGPKIDI---KLRDALDRRWQCATIQCD----FTLPERFD----LTYVD 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+      +    +GA+     V+     G    W   V    +++            
Sbjct: 500 ADGEKKRPVMVHRVILGAIERFIGVLIEHFAGNFPTWLAPVQATIVTVT------DNQIP 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +  +  L   G  V  D   E++G +   A L   P  ++VG K V    +  ++R  
Sbjct: 554 YAQAAFDTLRAAGVRVQKDFRNEKLGFKIREAQLQKIPYMLVVGDKEVEGGLLAPRYRDG 613

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
              + M+ E+ + +        +
Sbjct: 614 KNLDAMTPEQFVAFIEKEVKTYK 636


>gi|224476774|ref|YP_002634380.1| threonyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254783537|sp|B9DNC9|SYT_STACT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|222421381|emb|CAL28195.1| threonyl-tRNA synthetase 1 [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 647

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 156/446 (34%), Gaps = 33/446 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L          G+  WLP G      +   I +++  
Sbjct: 229 KAHLKMLEERKERDHRKIGKELDLFMN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVA 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P + + +L+  SG +D Y  +M      ++   M+  P +      I+++  
Sbjct: 288 LGYDHVYTPVMANVELYKTSGHWDHYQDDMFPPMKLDETEEMVLRPMNCPHHMMIYKNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++    L
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVELIL 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDD 241
            ++   G ++   R                  D  + + +   D   +          D+
Sbjct: 408 DVYEDFGFENYSFRLS--------------YRDPEDKEKYFDDDEMWERAESMLKEAVDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  ++ + + +S   ++    F    ++       
Sbjct: 454 MGLPYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERFD----LA 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G DG++H   +   G+ +         +           +    +I  +N+  H    
Sbjct: 503 YIGKDGEEHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVEIIPVNVDLH---- 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   +I   L   G  V  DD  E++G +   A +   P Q+++G K + +++V ++  
Sbjct: 559 YDYARQIQDELKSQGVRVEIDDRNEKMGYKIREAQMHKIPYQLVIGDKEIENNEVNVRKY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNNRP 447
            +  +E +  +E I          + 
Sbjct: 619 GSKDQETVEKDEFIWNLVDEIRLKKQ 644


>gi|197119263|ref|YP_002139690.1| prolyl-tRNA synthetase [Geobacter bemidjiensis Bem]
 gi|226701292|sp|B5EIT9|SYP_GEOBB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|197088623|gb|ACH39894.1| prolyl-tRNA synthetase [Geobacter bemidjiensis Bem]
          Length = 573

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 128/251 (50%), Positives = 170/251 (67%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P ++E P DAE+ SHKLMLR GMI + + GIY++LP G +++  V AI+REE
Sbjct: 1   MRYSQYFIPTVKETPSDAEVISHKLMLRAGMIRKLAAGIYNYLPFGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWKESGRWEFYGKELLRFNDRKDAEFCMGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  SY KM+ +
Sbjct: 121 EVRSYRQLPINLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDVNEAGADVSYEKMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK   + A++G IGG  SHEF+VLAD+GE  +       ++    E  +  
Sbjct: 181 YRRIFERCGLKFRAVEADTGTIGGSYSHEFMVLADSGEDAIVSCSAC-EYAANMEKAETR 239

Query: 241 DIISLNSIVEQ 251
               +     +
Sbjct: 240 KGEGIEHADPR 250



 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 78/196 (39%), Positives = 111/196 (56%), Gaps = 3/196 (1%)

Query: 256 YAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            +   D+ N  + D+ P     K    RGIEVGH+F  GTKYS  + ATF  ADGK+  +
Sbjct: 378 VSGFVDIRNVVIGDACPRCDSGKLEIWRGIEVGHVFKLGTKYSKALKATFLDADGKEQII 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R VAA IE +HD  GII+P  +APF+  + ++ A +   + A E IY  L
Sbjct: 438 FMGCYGIGVGRTVAACIEQNHDENGIIFPIPIAPFQCIISSLSAKEDEVKAASESIYQEL 497

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            + G +V  DD  E+ G +F  ADL+G PL+++VG+K +++ KVE+K R +G  E + + 
Sbjct: 498 LEAGIEVLLDDRDERPGFKFKDADLIGIPLRIVVGAKALAEGKVELKERRSGEVEVLPIA 557

Query: 433 EVINYASHRFSNNRPV 448
           E I            V
Sbjct: 558 EAIAKVKAAVKEALQV 573


>gi|30022651|ref|NP_834282.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|29898209|gb|AAP11483.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 14579]
          Length = 646

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 169/433 (39%), Gaps = 30/433 (6%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 238 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 296

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 297 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 356

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 357 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 416

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             GL++   R             +   ADT   + +   +  +          D++    
Sbjct: 417 DFGLENYSFRLS-----------YRDPADTK--KYYADDEMWEKAQGMLKEAMDEMGLDY 463

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV   ++  +L +++ +S   ++    F    ++      ++ G D
Sbjct: 464 YEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELSYVGED 512

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK H   +     G +  +   +    +     +P  +AP ++ +I +    QV  D  +
Sbjct: 513 GKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSP--QVHLDYAK 568

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++       
Sbjct: 569 KVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQKS 628

Query: 427 EDMSLEEVINYAS 439
           E ++L+  ++   
Sbjct: 629 ETIALDAFVDMIK 641


>gi|322383766|ref|ZP_08057517.1| threonyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321151978|gb|EFX44921.1| threonyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 649

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 69/436 (15%), Positives = 156/436 (35%), Gaps = 34/436 (7%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD       L + +    +  +G+  WLP G      +   I + + + G   +  P
Sbjct: 240 AKKRDHRKLGKDLKIFS-FSREVGQGLPLWLPNGATIRRTLERYIVDLEEKLGYQHVYTP 298

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L + DL+  SG ++ Y ++M      +++ ++  P +      ++++ + SYR+LP   
Sbjct: 299 VLANVDLYKTSGHWEHYREDMFPPMQLDNEELVLRPMNCPHHMMVYKNELHSYRDLPIRI 358

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R E+     G+ R R   + DA+ F   P+  K  + ++     +++   G+ 
Sbjct: 359 AELGTMHRYEMSGALTGLHRVRAMTLNDAHIFCR-PDQIKEEFARVITLIRQVYADFGIT 417

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDFDDIISLNSIVE 250
               R                  D  +T  +  + +  +          +++       E
Sbjct: 418 DYRFRLS--------------YRDPQDTDKYFPNDEMWEMSQRMLKEVVEELRLPYYEAE 463

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    DV   ++  +L + + +S   ++    F    ++       + G DG+ H
Sbjct: 464 GEAAFYGPKLDV---QIKTALKKEETLSTAQLD----FLLPERF----ELEYVGEDGQKH 512

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              +     G +  +  +     +      P  + P +  ++ +        D  +++  
Sbjct: 513 RPVVIHR--GIVSTMERMTAFLLENFAGALPTWLCPVQAKILPV---SSAFNDYAKEMED 567

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           RL + G  V  D   E++G +   + L   P  ++VG          ++ R  G     S
Sbjct: 568 RLKQAGIRVAADLRNEKLGYKIRESQLEKVPFMLVVGENEKQSGSFSVRRRGEGDLGVHS 627

Query: 431 LEEVINYASHRFSNNR 446
            + +I          +
Sbjct: 628 ADALIQMIREEIDTKK 643


>gi|323490461|ref|ZP_08095668.1| threonyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
 gi|323395865|gb|EGA88704.1| threonyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
          Length = 642

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 163/441 (36%), Gaps = 32/441 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L      +  +G+  WLP G      +   I +++ R
Sbjct: 232 KAHLEMLEEAKERDHRKIGKELNLFMN-SQKVGQGLPMWLPKGATIRRIIERYIVDKEER 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + S +L+  SG +D Y ++M  +   +++ ++  P +      IF+  I 
Sbjct: 291 LGYDHVYTPVMGSVELYKTSGHWDHYQEDMFPVMKMDNEELVLRPMNCPHHMMIFKQGIH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR +P    ++ L  R E+      ++    +  +     + P+  K  + ++    + 
Sbjct: 351 SYRQMPVRIAELGLMHRYEMSGALSGLQRVRGMTLNDAHLFVRPDQIKEEFKRVVNLIVE 410

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D  + + +   D M     +      D++
Sbjct: 411 VYKDFNINDYSFRLS--------------YRDPEDKEKYFDDDAMWNRAQAMLKEAMDEL 456

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                 VE   A Y    DV   ++  +L + + +S   ++    F    ++      ++
Sbjct: 457 DVDYIEVEGEAAFYGPKVDV---QVKTALGKEETLSTVQLD----FLLPERFD----LSY 505

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DGK H   +     G +  +   +    +     +P  +AP ++ LI +        
Sbjct: 506 IGEDGKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVELIPVSL--DAHS 561

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  +L      V  D+  E++G +   A +   P  +++G K + D  V ++   
Sbjct: 562 AYTKELQEKLQSHKIRVDIDERDEKLGYKIREAQMQKVPYMLVLGDKELEDGSVNVRKYG 621

Query: 423 TGIREDMSLEEVINYASHRFS 443
               E M  E+ +        
Sbjct: 622 EQKSESMPFEDFVKLVQSELR 642


>gi|258404181|ref|YP_003196923.1| threonyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
 gi|257796408|gb|ACV67345.1| threonyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
          Length = 649

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 80/439 (18%), Positives = 154/439 (35%), Gaps = 40/439 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              Y   + +   RD      +L L +    +   G+  W P G      +    R+E  
Sbjct: 227 LKNYLQQLEEAKKRDHRKLGAQLDLFS-FSEEAGPGMPLWHPKGALIRTILEDFSRKEHL 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G   +  PTL   +LW  SG YD+Y + M    + +D+A    P +      I+ + I
Sbjct: 286 RRGYQLVQGPTLLRQELWQRSGHYDNYRENM-YFTEIDDQAYGIKPMNCLAHMLIYNTKI 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  ++++    R E      G++R R+F   DA+      +        +    
Sbjct: 345 RSYRDLPIRYFELGTVHRHEKSGVLHGLLRVRQFTQDDAHILCRPDQLQDEISKIVRFV- 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                               + G    ++ V   T   +   S D  D    +     D+
Sbjct: 404 ------------------QDVLGLFGFDYEVEISTRPEKSIGSDDAWDRATDALTKALDE 445

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     I     A Y    D+   KL D+L    + +    +    F    ++       
Sbjct: 446 LGVEYGICAGDGAFYGPKIDM---KLKDALGRKWQCTTIQCD----FTLPERFD----LV 494

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H    +    +GA+     V+   + G    W        +++         
Sbjct: 495 YVGQDGQRHRPVMLHRAMLGAIERFLGVLLEHYAGALPTWLMPEQARVLNIT------DD 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  ++   +L   G     D   E++G +   A +   P  ++VG + V+ S   ++ 
Sbjct: 549 HAEYAQQCVDQLRAAGIRAEADLRNEKLGYKVREAQMEKIPYVLVVGEQEVATSGANLRL 608

Query: 421 RLTGIREDMSLEEVINYAS 439
           R       + ++++I+   
Sbjct: 609 RGGKNIGVLPVDDIIDRIR 627


>gi|294779531|ref|ZP_06744926.1| threonine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|300861074|ref|ZP_07107161.1| threonine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|307268336|ref|ZP_07549717.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307276154|ref|ZP_07557285.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|294453410|gb|EFG21817.1| threonine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|300850113|gb|EFK77863.1| threonine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|306507148|gb|EFM76287.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|306515362|gb|EFM83896.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|315036305|gb|EFT48237.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0027]
          Length = 660

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 246 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 303

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 304 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 363

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 364 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 423

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 424 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 470 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 518

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 519 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 575

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 576 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 635

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 636 SKETSVEDLSIFIDSMAAEVHNY 658


>gi|288940948|ref|YP_003443188.1| prolyl-tRNA synthetase [Allochromatium vinosum DSM 180]
 gi|288896320|gb|ADC62156.1| prolyl-tRNA synthetase [Allochromatium vinosum DSM 180]
          Length = 572

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 122/235 (51%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  ++E P DAEIASH+LMLR G+I + + G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRTSEFPLQTIKETPADAEIASHRLMLRAGLIRKLAAGLYTWLPLGLRVLRRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+S+P +Q A+LW ESGR++ YG E+LR  DR+ +   +GPTHEE++T++ R+
Sbjct: 61  MDRAGALEVSMPAVQPAELWQESGRWEQYGPELLRFKDRHQREFCFGPTHEEIITELARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF L       +Y +M  +
Sbjct: 121 ELKSYKQLPINFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLDDASLAETYQRMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL   P+ A++G IGG  SHEF VLA +GE  +       D+    E
Sbjct: 181 YCRIFTRCGLDFRPVSADTGSIGGSASHEFHVLASSGEDAIAF-STGSDYAANVE 234



 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/192 (40%), Positives = 106/192 (55%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +     ARGIEVGHIF  G KYS  M AT  G DGK   +
Sbjct: 380 PLPEVADLRNVVEGDPSPDGQGTLTIARGIEVGHIFQLGRKYSEAMKATVLGEDGKATVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  RVVAA IE  HD +GI WP  +APF+++L+ +K       R+A EK+YA 
Sbjct: 440 TMGCYGIGVSRVVAAAIEQHHDERGICWPAPIAPFEVALLPMKLGKSYRVREATEKLYAE 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD   + G  FA  +L+G P +++VG K + D +VE K R     + + +
Sbjct: 500 LQAAGIDVLLDDRDARPGFMFADMELIGIPHRIVVGDKGLDDGQVEYKGRADAEMQLIPI 559

Query: 432 EEVINYASHRFS 443
           + ++ +   R  
Sbjct: 560 DTIVEFVRERLR 571


>gi|209523462|ref|ZP_03272017.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209496204|gb|EDZ96504.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 622

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 75/446 (16%), Positives = 158/446 (35%), Gaps = 39/446 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +Y+    +E   RD      +L L +  I +    G+  W P G +    +    R+   
Sbjct: 211 EYYQQQKEEAKKRDHRKLGQELDLFS--IQEDAGGGLVFWHPKGSRMRLLIEDYWRQAHL 268

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P + + +LW  SG YD Y + M    +  +++    P +       ++SH+
Sbjct: 269 QDGYELLYSPHIANLELWKTSGHYDFYRENMFDQIEIENQSYQLKPMNCPFHVLTYQSHL 328

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP  + ++   +R E      G+MR R F   DA+ F L  + +      +    
Sbjct: 329 HSYRELPIRWAELGTVYRYERSGVLHGLMRVRGFTQDDAHIFCLPEQVADE-ILGVLNLT 387

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +I    G     +   + P                      +         +     + 
Sbjct: 388 EKILSDFGFSKYEVNLSTRPSKS-----------------VGNDAVWQLATDALIAALNT 430

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                   E   A Y    D+   K+ D++    + S   ++    F    ++++   A 
Sbjct: 431 KGWDYVTDEGGGAFYGPKIDI---KIQDAIGRLWQCSTIQVD----FNLPERFNMEYVAA 483

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 +   + +     G++     ++  ++ G   +W           + + A     
Sbjct: 484 ---DGSRQRPIMIHRAIFGSLERFFGILIENYAGDFPLW------LAPVQVRVLAVSDRF 534

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           RD  + I   L +       D+ GE++G Q   ++L   P+ V++G + + +  + ++ R
Sbjct: 535 RDYAQSIAQSLRQQNIRAEVDNTGERLGKQIRNSELEKIPVTVVIGQRELDNQSLSVRTR 594

Query: 422 LTGIREDMSLEEVINYASHRFSNNRP 447
            +G    M+L ++        +   P
Sbjct: 595 SSGDLGTMTLPQLTEEILKAIAEKSP 620


>gi|284008500|emb|CBA75007.1| prolyl-tRNA synthetase [Arsenophonus nasoniae]
          Length = 571

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SHKLMLR GMI + + G+Y WLP G + L  V  IIREE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHKLMLRAGMIRKLASGLYDWLPTGVRVLRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNRAGAIEISMPIVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF    +  + +Y+ M+ +
Sbjct: 121 EVTSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTDQDSLQQTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R+G     ++A++G IGG+ SHEF VLAD+GE  +       D+    E
Sbjct: 181 YSAIFTRIGFNFRAVQADTGSIGGNASHEFQVLADSGEDNIVF-STASDYAANIE 234



 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 71/186 (38%), Positives = 110/186 (59%), Gaps = 3/186 (1%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K      RGIEVGHIF  GTKYS  M A+ +  DG +  V MG YG
Sbjct: 386 DLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKASVQNEDGHNQTVTMGCYG 445

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGC 377
           IG  R+VAA IE SHD KGIIWPD++APF+++++ +  H     ++  E++Y  L   G 
Sbjct: 446 IGVTRIVAAAIEQSHDDKGIIWPDAIAPFQVAILPMNMHKSYRVKEVAERLYRDLQAKGI 505

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD  E+ G  FA  +L+G P  +++G + + +++VE K R    +E +++  ++++
Sbjct: 506 DVLLDDRKERPGVMFADMELIGIPHTIVIGDRNLDNNQVEYKQRRNNEKEYINIAGIVDF 565

Query: 438 ASHRFS 443
              + +
Sbjct: 566 LHTKLN 571


>gi|227519418|ref|ZP_03949467.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|307280591|ref|ZP_07561639.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|227073125|gb|EEI11088.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|306503957|gb|EFM73174.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|315145737|gb|EFT89753.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2141]
 gi|315151718|gb|EFT95734.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0012]
 gi|315173904|gb|EFU17921.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1346]
          Length = 660

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 246 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 303

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 304 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 363

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 364 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 423

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 424 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 470 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 518

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 519 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 575

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 576 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 635

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 636 SKETSVEDLSIFIDSMAAEVHNY 658


>gi|289830168|ref|ZP_06547590.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
          Length = 282

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSD-VSDYAANIE 234


>gi|332704074|ref|ZP_08424162.1| Prolyl-tRNA synthetase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554223|gb|EGJ51267.1| Prolyl-tRNA synthetase [Desulfovibrio africanus str. Walvis Bay]
          Length = 576

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 124/254 (48%), Positives = 170/254 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+++LP L+E P DAE+ SHKL+LR G+I Q + GIY++LP+G +AL+ V  I+R+E
Sbjct: 1   MRLSRFYLPTLKEVPADAEVVSHKLLLRAGLIRQLTSGIYTYLPMGLRALNKVADIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q A+LW E+GR++ YGKE+LR  DR D     GPTHEEV+T++ R 
Sbjct: 61  MDRAGAQEILMPMVQPAELWKETGRWEFYGKELLRFKDRKDSDYCLGPTHEEVVTNLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD   EG+  SY  M+ +
Sbjct: 121 EVRSYRQLPLNLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDRDEEGANKSYWSMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RLGLK   + A+SG IGG  SHEF+VLA TGE  +   ++        +     
Sbjct: 181 YAQIFRRLGLKFKAVEADSGAIGGSFSHEFMVLAATGEDTIATCQECEWAANLEKAAVIC 240

Query: 241 DIISLNSIVEQWTA 254
            ++        +T 
Sbjct: 241 KVLPCTDNCSPFTV 254



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 69/186 (37%), Positives = 103/186 (55%), Gaps = 2/186 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
             A +D+      D  P   +     RGIEVGH+F  G KYS  M ATF   +GKD  + 
Sbjct: 376 VEAYADLRTITHEDVCPRCGKGVSLTRGIEVGHVFKLGYKYSKAMHATFLDENGKDQTMV 435

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R++A+ IE +HD  GII+P S+AP++ +LI++            ++Y  L 
Sbjct: 436 MGCYGIGVSRIIASAIEQNHDDGGIIFPPSIAPYEAALISLGKSGDAVNAKAAELYESLR 495

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G +F  ADL+G+P+Q+++G K +    VE K R TG + ++ LE+
Sbjct: 496 AEGIEVLFDDREERPGVKFKDADLVGYPMQIVLGGKGLERGVVEAKDRRTGEKAELPLED 555

Query: 434 VINYAS 439
                 
Sbjct: 556 FTKAFK 561


>gi|15837338|ref|NP_298026.1| threonyl-tRNA synthetase [Xylella fastidiosa 9a5c]
 gi|22654146|sp|Q9PFE2|SYT_XYLFA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|9105624|gb|AAF83546.1|AE003915_11 threonyl-tRNA synthetase [Xylella fastidiosa 9a5c]
          Length = 635

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 72/435 (16%), Positives = 138/435 (31%), Gaps = 40/435 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            +     RD         L    + +   G+  W P G      +   IR     +G  E
Sbjct: 236 RLQDAEKRDHRKIGKVQDLF--HLQEEGPGLVFWHPKGWVIWQTIENYIRRVYRNSGYGE 293

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +    LW +SG +D+Y + M    D   +     P +      +F   + SYR+L
Sbjct: 294 LRCPQILDVSLWQKSGHWDNYKENMF-FTDSEKRTYAVKPMNCPGHVQVFNQGLHSYRDL 352

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  + +     R+E      G++R R F   D + F  T    +          L+++  
Sbjct: 353 PIRYGEFGACHRNEPSGALHGLLRVRGFTQDDGHIFC-TEAQIESEVTAFHRQALQVYAD 411

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G + I ++    P                           D    +             
Sbjct: 412 FGFEDIQIKIALRPDKR-----------------LGDSLSWDKAEAALRAALSACEVEWQ 454

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
            +    A Y    + H   L D++    ++    ++       G        A +     
Sbjct: 455 ELPGEGAFYGPKIEYH---LKDAIGRTWQLGTIQVDFMMPGRLG--------AEYVDERS 503

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           +  +   +    +G+M     ++    +    IWP  +AP ++ + NI        +  E
Sbjct: 504 QRCHPVMLHRAIVGSMERFIGILI---EHYAGIWPTWLAPVQVVVANIT---DAQYEYAE 557

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +++  L   G  V  D   E+IG +     L   P  ++VG +   +  V ++       
Sbjct: 558 RVHKALLNQGFRVNTDLRNEKIGYKIREHTLQRVPYLLVVGDREKENGTVAVRTCSREDL 617

Query: 427 EDMSLEEVINYASHR 441
             MS+   +      
Sbjct: 618 GAMSISAFVERLQAE 632


>gi|320539025|ref|ZP_08038700.1| threonyl-tRNA synthetase [Serratia symbiotica str. Tucson]
 gi|320030958|gb|EFW12962.1| threonyl-tRNA synthetase [Serratia symbiotica str. Tucson]
          Length = 642

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 139/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      + A +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTVFRELEAFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMGEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVRAE-VNACIRMVYDV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P     + +    A+                         +   
Sbjct: 408 YATFGFDKIAVKLSTRPEKRIGTDDMWTRAE-----------------EDLAAALTENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F+   + S    A++  
Sbjct: 451 PLEYQLGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FFLPGRLS----ASYVS 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D      V +    +G+M     ++   + G    W   V    +++           D
Sbjct: 500 EDNDRVVPVMIHRAILGSMERFIGILTEEYAGFYPTWIAPVQVVVMNIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G     D   E+IG +     L   P  ++ G K V    V ++ R  
Sbjct: 554 YVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGNVAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                  + EV+N       + 
Sbjct: 614 KDLGSQDVNEVVNKLLKEIRSR 635


>gi|239618448|ref|YP_002941770.1| threonyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
 gi|259516548|sp|C5CI64|SYT_KOSOT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239507279|gb|ACR80766.1| threonyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
          Length = 648

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 154/444 (34%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +++E   RD      +L L +   ++++ G+  + P G   L+ +    RE  ++
Sbjct: 232 EAYLKMMEEAKKRDHRKIGPQLGLFS-FSYEYAPGMPIYHPKGTIVLNELMKFSREVHSK 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + +  LW  SG +D Y   M    +++++     P +      I++S   
Sbjct: 291 HGYQEVMTPQIMNDVLWHRSGHWDHYRDNM-YFTEKDEQQYAIKPMNCPGHILIYKSRAM 349

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP   ++     R E      G++R R F+  DA+ F    +  K     +     
Sbjct: 350 SYRDLPLKLFEFGKVHRYERSGVLHGLLRVRGFIQDDAHIFCTREQ-LKEQLKDVIRFVD 408

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G +       + P       E                   D    +     + I
Sbjct: 409 MIYTPFGFEYRAD-LCTRPEDFMGDVE-----------------IWDLATEALKDAIESI 450

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                + E   A Y    D H   + DS+    + +   ++                 T+
Sbjct: 451 GLEYKVNEGDGAFYGPKIDFH---VTDSIGREWQCATIQLDF--------MMPERFELTY 499

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D K++    +     G++     ++   + G    W   +AP ++  I I       
Sbjct: 500 VGPDNKEYRPVMIHRAIYGSLDRFFGILIEHYAGAFPTW---LAPVQVVAIPISDKH--- 553

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L+  G  V  D+  +    +   A L   P  +I+G K      + ++ R
Sbjct: 554 VDYAREVADALAAEGVRVDVDEKQKSTNYKIREAQLNKIPYMLILGDKEKESETITVRLR 613

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M L E         SN 
Sbjct: 614 TGKNIYGMKLAEFSAKLKEEISNR 637


>gi|229032221|ref|ZP_04188194.1| Threonyl-tRNA synthetase [Bacillus cereus AH1271]
 gi|229076078|ref|ZP_04209046.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-18]
 gi|229105203|ref|ZP_04235852.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228678129|gb|EEL32357.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228706941|gb|EEL59146.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-18]
 gi|228729001|gb|EEL80004.1| Threonyl-tRNA synthetase [Bacillus cereus AH1271]
          Length = 645

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 167/433 (38%), Gaps = 30/433 (6%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             GL++   R             +   ADT   + +   +  +          D++    
Sbjct: 416 DFGLENYSFRLS-----------YRDPADTK--KYYADDEMWEKAQGMLKEAMDEMGLDY 462

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV   ++  +L +++ +S   ++    F    ++       + G D
Sbjct: 463 YEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELAYVGED 511

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK H   +     G +  +   +    +     +P  +AP +  +I +    QV  D  +
Sbjct: 512 GKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQAQVIPVSP--QVHLDYAK 567

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++       
Sbjct: 568 KVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQKS 627

Query: 427 EDMSLEEVINYAS 439
           E ++L+  ++   
Sbjct: 628 ETIALDAFVDMIK 640


>gi|218961058|ref|YP_001740833.1| threonyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
 gi|167729715|emb|CAO80627.1| threonyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
          Length = 633

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 144/439 (32%), Gaps = 39/439 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD       L L + +  +   G+  W P G      +    +E+  + G
Sbjct: 231 YLHFLEEASKRDHRKLGKDLELFS-ISDEVGPGLVLWHPKGAMVRHLIETYWKEQHLKKG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L  A+LW  SG  D Y + M    D   +     P +      I+ S + SY
Sbjct: 290 YQLVYTPHLGRANLWETSGHLDFYKENMYSKMDIEGQDYYIKPMNCPFHISIYNSSLHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++   +R E      G+MR R F   DA+      +                
Sbjct: 350 RELPIRLAELGTVYRYERSGVLHGLMRVRGFTQDDAHIICTPEQMDME------------ 397

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     +      +      EF++   T        K+  D    S       +  
Sbjct: 398 ------VDKLIVFSLDMLKAFGFKEFLIYLATKPDDCVGEKEDWDKATASLANSLQKLGL 451

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D+   K+ D+L    + +    +                 T+ G
Sbjct: 452 EYKVDEGGGAFYGPKIDI---KIKDALGRAWQCTTIQFDFNEP--------ERFDMTYIG 500

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           AD        +    +G++    A +    +      P  +AP +I LI I        +
Sbjct: 501 ADNSAHRPYMIHRAVLGSVERFFATLL---EYHSGNLPLWLAPVQIMLIPIT---DAQLN 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              KI  +L + G     D   E++G +   A+    P   I+G    ++++V ++    
Sbjct: 555 YARKIEEQLLEQGFRCELDSRSEKMGYKIRSAEKNKIPFMCILGKNEENNNQVTLRQHTV 614

Query: 424 GIREDMSLEEVINYASHRF 442
           G    M+LE  I       
Sbjct: 615 GDLGAMNLEAAIAILRKEL 633


>gi|307272094|ref|ZP_07553357.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|306511210|gb|EFM80217.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0855]
          Length = 660

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 246 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 303

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 304 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 363

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 364 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 423

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 424 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 470 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 518

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 519 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 575

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 576 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 635

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 636 SKETSVEDLSIFIDSMAAEVHNY 658


>gi|255020885|ref|ZP_05292941.1| Prolyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756]
 gi|254969676|gb|EET27182.1| Prolyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756]
          Length = 572

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 118/235 (50%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FLP+L+E P +AE+ SH+L+LR G I + + G+Y+WLPLG + L  V  ++REE
Sbjct: 1   MRASQSFLPLLKETPAEAELVSHQLLLRGGFIRRLASGLYTWLPLGLRVLRRVEQVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  +Q A+LW ESGR++ YG E+LRL DR+ +    GPTHEEV++D+ R 
Sbjct: 61  MDRSGAQEILMTVVQPAELWQESGRWELYGPELLRLKDRHQRDFCLGPTHEEVISDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP   YQIQ KFRDE+RPRFG+MR+REF+MKDAYSF +     +  Y  M+ +
Sbjct: 121 EIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRAREFIMKDAYSFHMDQASLEEGYRAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y R+F RLGL    + A+SG IGG  SHEF VLAD+GE  +   +   D+    E
Sbjct: 181 YCRVFQRLGLDFRAVEADSGAIGGKRSHEFHVLADSGEDAIAFCRHC-DYAANVE 234



 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 4/185 (2%)

Query: 258 ATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A +D+   +  D  P          RGIEVGH+F  GT+YS  +        G++  V M
Sbjct: 384 AWADLRLVQAGDPCPRCAGGSLEICRGIEVGHVFQLGTRYSERLGVRVLDEGGREQTVLM 443

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  R+VAA +E SHD +GI+WP+++APF++ ++ I          A  +++ RL 
Sbjct: 444 GCYGIGVSRIVAATVEQSHDERGIVWPEALAPFRVGIVAINGRKSPAVLSAALELHDRLE 503

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G     DD  E+ G QFA  DL+G P +V+V  K ++   +E + R       ++ + 
Sbjct: 504 AAGIPTLLDDRDERPGVQFATLDLIGLPHRVVVSDKLLAQGMLEYRARRDSDNRLLTPDA 563

Query: 434 VINYA 438
           +    
Sbjct: 564 LWELL 568


>gi|327536012|gb|AEA94846.1| threonine--tRNA ligase [Enterococcus faecalis OG1RF]
          Length = 660

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 246 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 303

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 304 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 363

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 364 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 423

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 424 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 470 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 518

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 519 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 575

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 576 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 635

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 636 SKETSVEDLSIFIDSMAAEVHNY 658


>gi|315148859|gb|EFT92875.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4244]
          Length = 660

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 246 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 303

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 304 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 363

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 364 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 423

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 424 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 470 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 518

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 519 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 575

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 576 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 635

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 636 SKETSVEDLSIFIDSMAAEVHNY 658


>gi|229099037|ref|ZP_04229971.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|229118067|ref|ZP_04247426.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228665290|gb|EEL20773.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228684265|gb|EEL38209.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-29]
          Length = 645

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 167/433 (38%), Gaps = 30/433 (6%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             GL++   R             +   ADT   + +   +  +          D++    
Sbjct: 416 DFGLENYSFRLS-----------YRDPADTK--KYYADDEMWEKAQGMLKEAMDEMGLDY 462

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV   ++  +L +++ +S   ++    F    ++       + G D
Sbjct: 463 YEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELAYVGED 511

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK H   +     G +  +   +    +     +P  +AP +  +I +    QV  D  +
Sbjct: 512 GKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQAQVIPVSP--QVHLDYAK 567

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++       
Sbjct: 568 KVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQKS 627

Query: 427 EDMSLEEVINYAS 439
           E ++L+  ++   
Sbjct: 628 ETIALDAFVDMIK 640


>gi|227554282|ref|ZP_03984329.1| threonyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229544818|ref|ZP_04433543.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|307289786|ref|ZP_07569723.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|227176572|gb|EEI57544.1| threonyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229310090|gb|EEN76077.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|306499171|gb|EFM68649.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|315030800|gb|EFT42732.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4000]
 gi|315575247|gb|EFU87438.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315582393|gb|EFU94584.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0309A]
          Length = 660

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 246 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 303

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 304 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 363

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 364 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 423

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 424 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 470 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 518

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 519 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 575

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 576 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 635

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 636 SKETSVEDLSIFIDSMAAEVHNY 658


>gi|78222623|ref|YP_384370.1| threonyl-tRNA synthetase [Geobacter metallireducens GS-15]
 gi|78193878|gb|ABB31645.1| Ser-tRNA(Thr) hydrolase [Geobacter metallireducens GS-15]
          Length = 645

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 152/440 (34%), Gaps = 40/440 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G   W P G      +    R+E  + G
Sbjct: 241 YLERIEEAKRRDHRKLGRELDLFS-FSDEVGAGFVIWHPNGAMLRTILEDFERKEHLKRG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DLW  SG YD+Y + M    +  +++    P +      I++SH++SY
Sbjct: 300 YDIVVGPQILKTDLWQRSGHYDNYRENM-YFTEVEEQSFGIKPMNCLSHMMIYKSHLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F+++    R E      G++R R F   DA+    TPE        +      +
Sbjct: 359 RDLPLRFFELGTVHRHERAGVLHGLLRVRCFTQDDAHILC-TPEQLDDEIKGVISFVNDV 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G                   EF +   T   +   S +  +    +      D   
Sbjct: 418 MGIFG------------------FEFEMELSTRPEKSIGSDEDWERATNALLGALKDSGR 459

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   KL DSL    + +    +    F    ++      T+  
Sbjct: 460 PYEINEGDGAFYGPKIDI---KLRDSLDRRWQCATIQCD----FTLPERFD----LTYVD 508

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+      +    +G++     V+     G   +W   V    +++          + 
Sbjct: 509 ADGERKRPVMVHRVILGSIERFIGVLIEHFAGNFPVWLSPVQAIVMTVT------DNQQS 562

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +++  L   G  V  D   E++G +   A L   P  +++G K V    V  + R  
Sbjct: 563 YAAQVFEALRSSGIRVRKDFRNEKLGFKIREAQLQKIPYMLVIGDKEVESGTVTPRFRDG 622

Query: 424 GIREDMSLEEVINYASHRFS 443
                M  EE + + +    
Sbjct: 623 SNLAAMKPEEFVVFINEDVK 642


>gi|77408338|ref|ZP_00785079.1| threonyl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77173019|gb|EAO76147.1| threonyl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 647

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 164/449 (36%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   +E   RD      +L L   M++ +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLKRREEAKERDHRKLGKELDLF--MVNPEVGQGLPFWLPNGATIRRELERYIVDKEI 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P + S + +  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 285 ASGYQHVYTPPMASVEFYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIEVYKHH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + DA+ F  TPE  K  + K    
Sbjct: 345 VHSYRELPIRIAELGMMHRYEKSGALTGLQRVREMTLNDAHIFV-TPEQIKDEFLKALNL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+    L     R            +     D  E          +          D
Sbjct: 404 IAEIYEDFNLTDYRFRLS-----YRDPEDKHKYYDNDEM--------WENAQAMLKEAMD 450

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D        E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 451 DFGLDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 499

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H    +   GI  M    A++  ++ G    W          +  I   ++
Sbjct: 500 KYIGADGEEHRPIMIHRGGISTMERFTAILIETYKGAFPTWLA-----PQQVSVIPISNE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   A     P Q+IVG K + +  V ++
Sbjct: 555 AHIDYAWEVARALKDRGIRAEVDDRNEKMQYKIRAAQTQKIPYQLIVGDKEMEEKAVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +   E  S+EE +          +RP
Sbjct: 615 RYGSKATETKSIEEFVESILADIARKSRP 643


>gi|146310396|ref|YP_001175470.1| prolyl-tRNA synthetase [Enterobacter sp. 638]
 gi|166980121|sp|A4W6T9|SYP_ENT38 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145317272|gb|ABP59419.1| prolyl-tRNA synthetase [Enterobacter sp. 638]
          Length = 572

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 168/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLWVESGR++ YG E+LR  DR +++ + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWVESGRWEQYGPELLRFVDRGERSFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKD+YSF  + E  + +Y+KM+ +
Sbjct: 121 ELNSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDSYSFHTSQESLQETYDKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDT-SDYAANIE 234



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 113/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  ++A+ +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGQGTLMIKRGIEVGHIFQLGTKYSEALNASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK 374
            YGIG  RVVAA IE +HD +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNHDERGIVWPDNLAPFQVAILPMNMHKSYRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  V++G + +    +E K+R +G ++ +   ++
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTVVIGDRNLDSDDIEYKYRRSGEKQMIKTGDI 562

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 563 LDYLVKAIK 571


>gi|307286857|ref|ZP_07566939.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|306502072|gb|EFM71358.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|315156485|gb|EFU00502.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0043]
 gi|315166285|gb|EFU10302.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1302]
 gi|315169145|gb|EFU13162.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1341]
          Length = 660

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 246 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 303

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 304 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 363

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 364 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 423

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 424 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 470 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 518

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 519 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 575

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 576 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 635

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 636 SKETSVEDLSIFIDSMAAEVHNY 658


>gi|315158985|gb|EFU03002.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0312]
          Length = 660

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 246 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 303

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 304 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 363

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 364 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 423

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 424 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 470 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 518

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 519 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 575

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 576 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 635

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 636 SKETSVEDLSIFIDSMAAEVHNY 658


>gi|270264794|ref|ZP_06193058.1| prolyl-tRNA synthetase [Serratia odorifera 4Rx13]
 gi|270041092|gb|EFA14192.1| prolyl-tRNA synthetase [Serratia odorifera 4Rx13]
          Length = 572

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   AIE+ +P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNANAIEVCMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQATYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL   P+ A++G IGG  SHEF VLAD+GE  +       DF    E
Sbjct: 181 YSKIFSRMGLDFRPVHADTGSIGGSASHEFQVLADSGEDDIVF-STGSDFAANIE 234



 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/192 (37%), Positives = 113/192 (58%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K   +  RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 380 PLPQVADIRNVVEGDASPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVL 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     +   E++Y  
Sbjct: 440 TMGCYGIGVTRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVQALAEELYNT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G ++ +  
Sbjct: 500 LRSHGIDVILDDRKERPGVMFADMELIGVPHSIVIGDRNLDSEEIEYKNRRVGEKQMIKT 559

Query: 432 EEVINYASHRFS 443
            E++++   +  
Sbjct: 560 GEIVDFLLGQIK 571


>gi|229087132|ref|ZP_04219282.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-44]
 gi|228696200|gb|EEL49035.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-44]
          Length = 643

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 168/433 (38%), Gaps = 30/433 (6%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 235 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 294 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 413

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             GL++   R             +   ADT   + +   +  +          D++    
Sbjct: 414 DFGLENYSFRLS-----------YRDPADTK--KYYADDEMWEKAQSMLKEAMDEMGLEY 460

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+ G D
Sbjct: 461 YEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELTYVGED 509

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK H   +     G +  +   +    +     +P  +AP ++ +I +    QV  D  +
Sbjct: 510 GKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSP--QVHLDYAK 565

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++       
Sbjct: 566 KVQEELQRAGIRVEVDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQKS 625

Query: 427 EDMSLEEVINYAS 439
           E ++L+  +    
Sbjct: 626 ETIALDAFVEMIK 638


>gi|157156008|ref|YP_001461365.1| prolyl-tRNA synthetase [Escherichia coli E24377A]
 gi|166980119|sp|A7ZHT6|SYP_ECO24 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157078038|gb|ABV17746.1| prolyl-tRNA synthetase [Escherichia coli E24377A]
          Length = 572

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRIGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 112/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           + Y   +  
Sbjct: 563 VEYLVKQIK 571


>gi|315033108|gb|EFT45040.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0017]
          Length = 672

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 258 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 315

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 316 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 375

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 376 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 435

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 436 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 481

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 482 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 530

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 531 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 587

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 588 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 647

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 648 SKETSVEDLSIFIDSMAAEVHNY 670


>gi|312951108|ref|ZP_07770013.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|310630884|gb|EFQ14167.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|315154152|gb|EFT98168.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0031]
          Length = 660

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 246 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 303

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 304 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 363

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 364 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 423

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 424 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 470 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 518

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 519 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 575

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 576 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 635

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 636 SKETSVEDLSIFIDSMAAEVHNY 658


>gi|163752580|ref|ZP_02159762.1| threonyl-tRNA synthetase [Shewanella benthica KT99]
 gi|161327534|gb|EDP98738.1| threonyl-tRNA synthetase [Shewanella benthica KT99]
          Length = 642

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 145/445 (32%), Gaps = 41/445 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L    + + + G+  W   G      +   IRE+
Sbjct: 227 KALKIHLNRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTLFLELEKFIREK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P +    LW  SG +D Y + M       ++  +  P +      IF  
Sbjct: 285 LGQYTYQEVKGPLMMDRVLWERSGHWDKYSEAMFT-TKSENREYVIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +   +    
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQVQQEVSACIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G  +I ++  + P       E                   D    +     
Sbjct: 403 MVYDTYATFGFNNIVIKLSTRPEQRIGDDE-----------------MWDRAEEALKQAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   I+    A Y    +     L D L    +     ++       G        
Sbjct: 446 IANDIEFEILPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPGRLG-------- 494

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+   D        +    +G++     ++   + GK   W   +    +++       
Sbjct: 495 ATYVAEDNSRQTPVMIHRAILGSLERFLGILIEEYAGKFPTWLAPMQVVVMNIT------ 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   ++   L + G     D   E+IG +     L   P  ++VG + + + +V +
Sbjct: 549 DKQSDYAHEVVNLLKENGIRASKDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R       M +EE     + + S
Sbjct: 609 RTRDGVDLGKMRIEEFAAKVNKQIS 633


>gi|307634865|gb|ADI84351.2| threonyl-tRNA synthetase [Geobacter sulfurreducens KN400]
          Length = 645

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 84/440 (19%), Positives = 144/440 (32%), Gaps = 40/440 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +        G   W P G      +    R E  + G
Sbjct: 241 YLEKIEEAKRRDHRKLGRELDLFS-FSDDVGAGFVIWHPKGAMLRTLLEDFERREHLKRG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   +LW  SG YD+Y + M    +   +     P +      I++S ++SY
Sbjct: 300 YDIVVGPQILKTELWQRSGHYDNYRENM-YFTEVEGQGFGIKPMNCLSHMMIYKSQLRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F+++    R E      G++R R F   DA+    TPE        +      +
Sbjct: 359 RDLPLRFFELGTVHRHERAGVLHGLLRVRCFTQDDAHILC-TPEQLDAEIKGVISFVNDV 417

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G         + P     S E                   +    +      D   
Sbjct: 418 MGIFGFDYEM-ELSTRPEKSIGSDE-----------------DWERATGALLGALKDSGR 459

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   KL DSL    + +    +    F    ++      T+  
Sbjct: 460 PYEINEGDGAFYGPKIDI---KLRDSLDRKWQCATIQCD----FTLPERFD----LTYVD 508

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+      +    +G++     V+     G   +W   V    +++          + 
Sbjct: 509 ADGERKRPVMVHRVILGSIERFIGVLIEHFAGNFPLWLSPVQAIVLTVT------DNQQP 562

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +++  L   G  V  D   E++G +   A L   P  +++G K V    V  + R  
Sbjct: 563 YAAQVFETLRTNGVRVQKDFRNEKLGFKIREAQLQKIPYMLVIGDKEVESGTVTPRFRDG 622

Query: 424 GIREDMSLEEVINYASHRFS 443
                M  EE + + +    
Sbjct: 623 SNLAAMKPEEFVAFVNDEVK 642


>gi|293382457|ref|ZP_06628392.1| threonine--tRNA ligase [Enterococcus faecalis R712]
 gi|293387159|ref|ZP_06631720.1| threonine--tRNA ligase [Enterococcus faecalis S613]
 gi|312906512|ref|ZP_07765514.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312910456|ref|ZP_07769302.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|291080141|gb|EFE17505.1| threonine--tRNA ligase [Enterococcus faecalis R712]
 gi|291083430|gb|EFE20393.1| threonine--tRNA ligase [Enterococcus faecalis S613]
 gi|310627455|gb|EFQ10738.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|311289228|gb|EFQ67784.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
          Length = 660

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 161/443 (36%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 246 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 303

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 304 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 363

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 364 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 423

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 424 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 470 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 518

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 519 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 575

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   
Sbjct: 576 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYG 635

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   I+  +    N 
Sbjct: 636 SKETSVEDLSIFIDSMAAEVHNY 658


>gi|228987823|ref|ZP_04147932.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229158179|ref|ZP_04286246.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228625137|gb|EEK81897.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228771871|gb|EEM20328.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 645

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 167/433 (38%), Gaps = 30/433 (6%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             GL++   R             +   ADT   + +   +  +          D++    
Sbjct: 416 DFGLENYSFRLS-----------YRDPADTK--KYYADDEMWEKAQGMLKEAMDEMGLDY 462

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV   ++  +L +++ +S   ++    F    ++       + G D
Sbjct: 463 YEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELAYVGED 511

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK H   +     G +  +   +    +     +P  +AP +  +I +    QV  D  +
Sbjct: 512 GKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQAQVIPVSP--QVHLDYAK 567

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++       
Sbjct: 568 KVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQKS 627

Query: 427 EDMSLEEVINYAS 439
           E ++L+  ++   
Sbjct: 628 ETIALDAFVDMIK 640


>gi|171463692|ref|YP_001797805.1| threonyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|238689063|sp|B1XV14|SYT_POLNS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|171193230|gb|ACB44191.1| threonyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 640

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 141/442 (31%), Gaps = 41/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L      + + G+  W P G      V   +R    + G
Sbjct: 231 YLHMLEESEKRDHRRLGKQLDLF--HFQEEAPGLIFWHPKGWSIWQEVEQYMRRVYQQEG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +++Y + M    +  ++A    P +      I+ S + SY
Sbjct: 289 YQEVKAPQILDRGLWEKSGHWENYKENMFT-TESENRAYALKPMNCPGHVQIYNSGLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  F +     R+E      G+MR R F   D + F    +           +   +
Sbjct: 348 RELPLRFGEFGQCHRNEPSGALHGLMRVRGFTQDDGHIFCTEDQIQSE-VAAFDKAVRAV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++    P                           D    +          
Sbjct: 407 YQDFGFTEVAVKLALRPAKR-----------------VGDDAIWDKAEEALRGALKASGQ 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    + H   L DS+    +     ++       G        A +  
Sbjct: 450 EWEELPGEGAFYGPKIEYH---LKDSIGRTWQCGTIQVDFSMPARLG--------AEYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +        +    +G++     ++    +      P  +AP +  ++NI  +      
Sbjct: 499 ENNSRKTPVMLHRAIVGSLERFIGILI---ENHTGNMPVWLAPTQAVVLNISGNSA---A 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++   L K G  +  D   E+I  +     L   P  +IVG K    + V ++ R  
Sbjct: 553 YAQQVQQLLKKQGFRIESDLRNEKITYKIREYALQKTPFLLIVGDKESESNTVAVRARGG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M L+  +       S  
Sbjct: 613 VDLGVMPLDAFVARLQQDISQK 634


>gi|307544897|ref|YP_003897376.1| prolyl-tRNA synthetase [Halomonas elongata DSM 2581]
 gi|307216921|emb|CBV42191.1| prolyl-tRNA synthetase [Halomonas elongata DSM 2581]
          Length = 573

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 126/237 (53%), Positives = 166/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +  L+E P DA+I SH+LMLR GMI + + G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRASQLLIATLKETPADADIVSHQLMLRAGMIRRLNAGLYTWLPLGLRTLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q A+LW ESGR+D YG  +LR+ DR+D+   YGPTHEEV+TD+ R+
Sbjct: 61  MNRAGAQEVLMPAIQPAELWQESGRWDQYGNLLLRIRDRHDRDFCYGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ +P  FYQIQ KFRDE RPRFGVMR+REF+MKDAYSFD+   G + SY+ M+ +
Sbjct: 121 ELRSYKQVPSNFYQIQTKFRDETRPRFGVMRAREFIMKDAYSFDVDQAGLQRSYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y+RIF RLGL    + A++G IGG  SHEF VLAD+GE  V       D+    E  
Sbjct: 181 YVRIFTRLGLDFRAVEADNGDIGGSGSHEFQVLADSGEDAVVF-STSSDYAANIEKA 236



 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 111/205 (54%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D  P+ +     ARGIEVGH+F  GTKYS  M
Sbjct: 367 DGKHYFGINWERDVALPKVADLRNVVEGDPSPDGQGTLSIARGIEVGHVFQLGTKYSTAM 426

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +AT    +G+   + MG YGIG  RVVAA IE +HD  GIIWPD++APF ++L+ + A  
Sbjct: 427 NATVLDDNGQAVPLLMGCYGIGVTRVVAAAIEQNHDDAGIIWPDAIAPFNVALVPMNAHK 486

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q  RD  E++Y  LS  G DV  DD   + G +FA  +L+G P ++++G + +   ++E
Sbjct: 487 SQRVRDESERLYQALSDAGLDVLLDDRDLRPGVRFADQELMGIPHRIVIGDRSLDKGELE 546

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            K R       + +++VI +   + 
Sbjct: 547 YKGRRDSEATMIPIDDVIAFLREKI 571


>gi|261245474|emb|CBG23264.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
          Length = 572

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLVSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFSD-VSDYAANIE 234



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 VVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   ++
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDI 562

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 563 VDYLVKAIK 571


>gi|260583498|ref|ZP_05851246.1| threonine--tRNA ligase [Granulicatella elegans ATCC 700633]
 gi|260158124|gb|EEW93192.1| threonine--tRNA ligase [Granulicatella elegans ATCC 700633]
          Length = 647

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 160/446 (35%), Gaps = 33/446 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           FL + +E   RD      +L L   MI  +   G+  WLP G      +   I +++   
Sbjct: 229 FLKMREEAKERDHRKLGKELDLF--MISQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIK 123
           G   +  P +    L+  SG +  Y ++M    D  D   ++  P +      ++++HI 
Sbjct: 287 GYQHVYTPVMADVGLYKTSGHWAHYQEDMFPPMDMGDGELLVLRPMNCPHHMMVYKNHIH 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + ++      
Sbjct: 347 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRILDLIRE 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    +K    R            +     D  E          +          D++ 
Sbjct: 407 VYKDFNVKDYRFRLS-----YRDPEDKHKYFDDDEM--------WNKAEAMLKEAMDEMG 453

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y    D+   +   ++   + +S   ++    F    ++      T+ 
Sbjct: 454 LEYFEAIGEAAFYGPKLDI---QFKTAMGLEETMSTIQLD----FLLPERFD----LTYV 502

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           G DG + +  +  +  G +      +    +     +P  +AP + ++I +    +   D
Sbjct: 503 GEDGDNTHRPVVIHR-GVVSTAERFVAYLIEEYKGAFPTWLAPVQATIIPVSV--EHHYD 559

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           A   +  ++  +G  V  DD  E++G +   +     P Q+++G K V +  V ++   +
Sbjct: 560 AARALKEKMMSLGLRVELDDRNEKMGYKIRASQTQKIPYQLVIGDKEVEEGTVTVRRYGS 619

Query: 424 GIREDMSLEEVINYASHRFSN-NRPV 448
                M++   +       +N +RP+
Sbjct: 620 KETVSMTIGAYLERVQREIANFSRPL 645


>gi|315646839|ref|ZP_07899954.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315277769|gb|EFU41093.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 635

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 88/434 (20%), Positives = 155/434 (35%), Gaps = 39/434 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L   M    + G+  +LP G    + +    RE Q   G  E+  P
Sbjct: 239 AKKRDHRKLGKELGLF--MFSDDAPGMPFFLPKGTIIRNELEQFARELQFHRGYDEVRTP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + +  LW  SG +D Y   M      +++  +  P +      ++++ + SYR LP   
Sbjct: 297 LMMNKRLWEMSGHWDHYKDNMYFSK-VDEQEYVMKPMNCPGHMLVYQNSLHSYRELPIRL 355

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +     R E      G+MR R F   DA+ F    +       ++     +++   G  
Sbjct: 356 SEFGQVHRHEYSGALSGMMRVRTFCQDDAHIFVRPDQIHDE-IGQVIDFISQVYRVFGFD 414

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  + P     S E    A++   +V                  D       I E 
Sbjct: 415 YTI-ELSTRPEDSMGSDELWEQAESSLQEVL-----------------DQQKLPYRINEG 456

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    D H   + DSL  + +     ++    F F  K+ L   A     + K   
Sbjct: 457 DGAFYGPKIDFH---ILDSLKRSWQCGTIQLD----FQFPEKFDLSYIAE---DNQKHRP 506

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +     G++     ++    +  G  +P  +AP  + LI +  H     D   K+  R
Sbjct: 507 VVIHRAVFGSIERFIGILT---EHYGGAFPLWLAPVHVMLIPVSDH---YIDFSLKVKKR 560

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G  V  D   E++G +   A LL  P   ++G K ++   V ++ R  G   + ++
Sbjct: 561 LEHAGVRVEVDIRNEKLGYKIREAGLLKTPYTFVLGEKEMNSDLVAVRKRGEGELGESAI 620

Query: 432 EEVINYASHRFSNN 445
           +++I        + 
Sbjct: 621 DDMIARLRKEIESR 634


>gi|253699963|ref|YP_003021152.1| prolyl-tRNA synthetase [Geobacter sp. M21]
 gi|259511598|sp|C6E496|SYP_GEOSM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|251774813|gb|ACT17394.1| prolyl-tRNA synthetase [Geobacter sp. M21]
          Length = 573

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 128/251 (50%), Positives = 171/251 (68%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P ++E P DAE+ SHKLMLR GMI + + GIY++LP G +++  V AI+REE
Sbjct: 1   MRYSQYFIPTVKETPSDAEVISHKLMLRAGMIRKLAAGIYNYLPFGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWKESGRWEFYGKELLRFNDRKDAEFCMGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  SY KM+ +
Sbjct: 121 EVRSYRQLPINLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDVNEAGADVSYEKMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK   + A++G IGG+ SHEF+VLAD+GE  +       ++    E  +  
Sbjct: 181 YRRIFERCGLKFRAVEADTGTIGGNYSHEFMVLADSGEDAIVSCSAC-EYAANMEKAETR 239

Query: 241 DIISLNSIVEQ 251
               +     +
Sbjct: 240 KGEGIEHADPR 250



 Score =  189 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 77/196 (39%), Positives = 110/196 (56%), Gaps = 3/196 (1%)

Query: 256 YAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            +   D+ N  + D+ P     K    RGIEVGH+F  GTKYS  + ATF  ADGK+  +
Sbjct: 378 VSGFVDIRNVVIGDACPRCDSGKLEIWRGIEVGHVFKLGTKYSKALKATFLDADGKEQTI 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R VAA IE +HD  GII+P  +APF+  + ++   +   + A E IY  L
Sbjct: 438 FMGCYGIGVGRTVAACIEQNHDENGIIFPIPIAPFQCIISSLSVKEDEVKAASESIYQEL 497

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            + G +V  DD  E+ G +F  ADL+G PL+++VG+K +++ KVE+K R +G  E + + 
Sbjct: 498 LEAGIEVLLDDRDERPGFKFKDADLIGIPLRIVVGAKALAEGKVELKERRSGEVEVLPIA 557

Query: 433 EVINYASHRFSNNRPV 448
           E I            V
Sbjct: 558 EAIAKVKAAVKEALQV 573


>gi|330964813|gb|EGH65073.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 571

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 122/270 (45%), Positives = 174/270 (64%), Gaps = 10/270 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +    +  D+    E  +  
Sbjct: 181 YSNVFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVF-SNGSDYAANIEKAEA- 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                   V +  A  AAT ++      D+
Sbjct: 239 --------VPREKARAAATEELRLVDTPDA 260



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 111/207 (53%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGQGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   R  
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGRVK 570


>gi|330872665|gb|EGH06814.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 571

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 122/270 (45%), Positives = 174/270 (64%), Gaps = 10/270 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +    +  D+    E  +  
Sbjct: 181 YSNVFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVF-SNGSDYAANIEKAEA- 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                   V +  A  AAT ++      D+
Sbjct: 239 --------VPREKARAAATEELRLVDTPDA 260



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P  A +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPAVADLRNVVAGDPSPDGQGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   R  
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGRVK 570


>gi|114152232|sp|Q3IGT7|SYP_PSEHT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 574

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 123/237 (51%), Positives = 157/237 (66%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYILATLKETPSDAEIVSHQLMLRAGMIRRVASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+  AIEM +P +Q ADLW ESGR+D +G E++R  DR+++    GPTHEEV+TD  R 
Sbjct: 61  MNKANAIEMLMPVIQPADLWEESGRWDEFGPELMRFTDRHNRTFALGPTHEEVITDFVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ K RDE RPRFGVMR+REF MKDAYSF L+ E    +Y  M  +
Sbjct: 121 EISSYKQLPISLYQIQTKVRDERRPRFGVMRAREFTMKDAYSFHLSDECLDATYQVMHKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RL L   P+ A++G IGG +SHEF VLA++GE  +  S    D+    E  
Sbjct: 181 YCNIFERLNLDYRPVIADTGSIGGSVSHEFHVLAESGEDAIAFSD-GSDYAANIEKA 236



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 99/189 (52%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D+    +      RGIEVGHIF  GTKYS  M A      GK+  + MG
Sbjct: 385 EVADIRNIVEGDASPCGQGTLQIKRGIEVGHIFQLGTKYSQAMKAGVLNESGKNQIMTMG 444

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSK 374
            YGIG  R+VAA IE ++D  GIIWP  +APF ++++ +         D    +Y  L  
Sbjct: 445 CYGIGVSRIVAAAIEQNNDQYGIIWPQPIAPFDLAIVPMNMHKSHRIPDIATNLYQGLKD 504

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV +DD  E+ G  F   +L+G P  +++G + + ++KVE+K+R TG +  + ++  
Sbjct: 505 AGLDVLFDDRKERPGVMFNDMELIGVPFTLVIGERNLDENKVELKNRRTGEKLMIDIDTA 564

Query: 435 INYASHRFS 443
           I+       
Sbjct: 565 IDAIKAAVK 573


>gi|315498771|ref|YP_004087575.1| threonyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
 gi|315416783|gb|ADU13424.1| threonyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
          Length = 640

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 150/440 (34%), Gaps = 40/440 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + ++  L+E   RD      ++ L    + +  +G+  W P G      + A +R   + 
Sbjct: 231 QAYITRLEEAEKRDHRKLGRQMNLF--HMQEEGRGMVFWHPHGWTLWRTLEAYMRRRLDA 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +     W +SG +D Y   M        + +   P +      IF+  ++
Sbjct: 289 AGYVEVKTPQVLDRTFWEKSGHWDKYRPNMFVCETVEGETLSLKPMNCPGHVQIFKVGLR 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY+ LP    +     R E      G+MR R F   DA+ F    +  + +   + +   
Sbjct: 349 SYKELPIRMAEFGACHRYEPSGSLHGLMRVRGFTQDDAHIFCREDQIVEETTKFITLC-R 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           ++   LG+++  +   + P     S EF                  D             
Sbjct: 408 QVHADLGMQAEHIALATRPEVRAGSDEF-----------------WDKAEAQMAEAARAA 450

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A YA   D     + D++          ++       G        A +
Sbjct: 451 GVEPVIAEGDGAFYAPKLDFI---VRDAIGRTWTCGTIQLDYVLPERLG--------AEY 499

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG       +    +G+      +I    +  G  +P  +AP ++ +  I       
Sbjct: 500 VAEDGSRQRPVMLHRAILGSFERFIGIII---ENYGGKFPLWLAPIQVVVAPIT---SDA 553

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++ ++L  VG  V  D   E+I  +     L   P+  +VG K     +V +++ 
Sbjct: 554 NDYAQQVASKLRSVGLRVDTDLRNEKINYKIREHSLAKVPVIAVVGRKEAETGEVALRYL 613

Query: 422 LTGIREDMSLEEVINYASHR 441
               +  +S++         
Sbjct: 614 GQEGQTVLSVDSAAEQLRTE 633


>gi|229096864|ref|ZP_04227833.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|228686474|gb|EEL40383.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-29]
          Length = 639

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 154/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMGQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DVKNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++  +L++ G  +  D   E++G +   A +   P  +++G + + +  V ++   
Sbjct: 556 QYANEVADKLAQAGVRIERDVRDEKLGYKIREAQMQKIPYVLVIGDREMENGFVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E ++L+           N +
Sbjct: 616 EEKSEVVALDVFAASMEEEIKNRK 639


>gi|194333013|ref|YP_002014873.1| threonyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
 gi|238693296|sp|B4S3D2|SYT_PROA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194310831|gb|ACF45226.1| threonyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
          Length = 657

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 77/450 (17%), Positives = 158/450 (35%), Gaps = 39/450 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   I +   RD      +L L   +  +   G+  WLP G    + + + +REEQ 
Sbjct: 239 LKQHLAHIEEAKKRDHRKLGAELELFM-LSPEVGSGLPIWLPKGAIVRNELESFLREEQR 297

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEML---RLADRNDKA--MIYGPTHEEVMTDI 117
           + G + +  P + +  L+  SG Y  Y +         D   +    +  P +      I
Sbjct: 298 KRGYVPVYTPHIGNIGLYKRSGHYPYYSESQFPPLTYTDDLGREEQYLLKPMNCPHHHMI 357

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           + S ++SYR+LP    +    +R E      G++R+R F   D++ +    +        
Sbjct: 358 YSSKLRSYRDLPIRLTEFGTVYRHEQSGELNGLIRARGFTQDDSHIYCRPDQLVDE-ICN 416

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSE 235
                  +F  LG   I +R                  D      +  +K+  +      
Sbjct: 417 AIDLTKFVFATLGFDDIQIRLSLH--------------DPENQDKYGGTKEVWEQAEKDV 462

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
               D +           + Y    D     + D++    ++    ++            
Sbjct: 463 REAADRMNIDYFTGIGEASFYGPKIDFI---VRDAIGRKWQLGTVQVDYVMP-------- 511

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                ++ G+DG+ H   +              I    +  G  +P  +AP +I+++ I 
Sbjct: 512 ERFDLSYIGSDGQPHRPVIIHRAPFGSMER--FIGVLIEHTGGNFPLWLAPVQIAVLPIT 569

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D   ++   L   G  V  D   E+IG +   +++   P  VI+G K  +  +
Sbjct: 570 ---DEVHDYAVQVRDTLHAAGMRVELDTRSEKIGKKIRESEVAKIPYMVIIGQKEAAAGE 626

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++    G + +M++EE+    +   ++ 
Sbjct: 627 VSLRRHREGDQGNMTVEELKEKLAKEINDK 656


>gi|228997455|ref|ZP_04157073.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|229005099|ref|ZP_04162823.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228756201|gb|EEM05522.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228762288|gb|EEM11216.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock3-17]
          Length = 641

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 153/443 (34%), Gaps = 42/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   R+     ++L L   M  + + G+  +LP GQ   + + + +RE Q    
Sbjct: 235 YLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIVRNELESFLREIQQNYD 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW ESG +D Y   M   ++ ++K+    P +      IF++ + SY
Sbjct: 293 YQEVRTPIMMNQGLWEESGHWDHYKDNM-YFSEVDNKSFALKPMNCPGHMLIFKNKLHSY 351

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G++R R F   DA+   +TPE  +     +      +
Sbjct: 352 RDLPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIESEIKSVLKQIDYV 410

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   +   + P       E    A+                  S       +  
Sbjct: 411 YRTFGFEYE-VELSTRPEDSMGDDELWNQAEL-----------------SLENVLKSLNY 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   + D+L  + +     ++    F    K+       +  
Sbjct: 453 NYRVNEGDGAFYGPKIDFH---IKDALQRSHQCGTVQLD----FQMPEKFD----LNYID 501

Query: 305 ADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              +     +    +     R +  +IE                  + +  I   +QV  
Sbjct: 502 ERNEKRRPVVIHRAVLGSFDRFLGILIEHFGGAFPTWLAP------VQIKVIPVSNQVHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              ++I  +L  VG     D   E++G +   A L   P  +++G K + +  V ++   
Sbjct: 556 QYTKEIEEKLKSVGLRAERDARSEKLGYKIREAQLQKIPYILVIGDKEMENGSVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
               E +SL   +        N 
Sbjct: 616 EEKSEVVSLSAFMESIRKEVYNK 638


>gi|237746898|ref|ZP_04577378.1| prolyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
 gi|229378249|gb|EEO28340.1| prolyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
          Length = 578

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  +  IIREE
Sbjct: 1   MRASQFFISTLKEAPADAEIISHKLMVRAGMIRRLGSGIYAYMPMGLRVIHKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR+  YG E+LR+ DR+D+  I  PT EEV+TDI R+
Sbjct: 61  MNRAGAVELLMPLVQPAELWQETGRWQKYGPELLRVKDRHDRDFIIQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G K SY  MF +
Sbjct: 121 VIKSYRQLPINFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDVAGLKKSYQVMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y++IF R GLK  P+ A++G IGG  SHEF V+ADTGE  +       D+    E
Sbjct: 181 YIKIFTRFGLKFRPVAADNGAIGGSGSHEFHVIADTGEDALVY-SRDSDYAANME 234



 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 131/292 (44%), Gaps = 29/292 (9%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
             K+   F    E     Y      YL          I + A+          +FI  A+
Sbjct: 312 TQKNIGEFRFASESEIVHYLGCPSGYLGPVGLSERTDIALYADHAVTVMS---DFICGAN 368

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             +          D P+P                       +  +D  N    D  P+ K
Sbjct: 369 EKDMHYTGVNWERDVPLP-----------------------STVADFRNVVEGDPSPDGK 405

Query: 276 --RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 RGIEVGH+F  GT+YS  M AT+   +GK   +QMG YGIG  R++ A IE ++
Sbjct: 406 GTLAIQRGIEVGHVFQLGTRYSEDMHATYLDENGKPQLMQMGCYGIGVTRIMGAAIEQNN 465

Query: 334 DGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           D +GIIWP S+APF++ L  +     ++ R+  +K+Y  L   G DV  DD GE+ G  F
Sbjct: 466 DERGIIWPVSIAPFEVVLCPLGYDRSEMVRNTADKLYGTLKNAGLDVLMDDRGERPGVMF 525

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  +L+G P ++++G + + + K+E + R       ++++++ N+   + ++
Sbjct: 526 SDWELIGIPHRIVIGERGLKEGKLEYQGRRDKEATAVAIDDMANFIKDKLAS 577


>gi|328951014|ref|YP_004368349.1| threonyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
 gi|328451338|gb|AEB12239.1| threonyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
          Length = 647

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 160/443 (36%), Gaps = 37/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y   + +   RD      +L L   +I     KG+  WLP G    + +   +REEQ R 
Sbjct: 238 YLWQLEEAKKRDHRKLGRELELF--LIDPMVGKGLPLWLPKGNTVRELLVQFMREEQLRR 295

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   ++ P + S +L+  SG Y  Y        +  D+A +  P +      I+ +  +S
Sbjct: 296 GYQLVTTPHVGSLELYKTSGHYPYYADSQFPPIELEDEAYLLKPMNCPHHIRIYAARPRS 355

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +    +R E      G+ R R F   DA+ F  TPE  K  +  +    + 
Sbjct: 356 YRELPLRLAEFGTVYRFEQSGELHGLTRVRGFTQDDAHIFC-TPEQVKEEFLSVLDLTMH 414

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +F  LG+++   R              I + D    +                   +++ 
Sbjct: 415 VFRTLGMENYRAR--------------IGVRDPSSDKYVGEDAKWALAERQIQEACEEVG 460

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              ++     A Y    D     + D+L    ++    ++                 T+ 
Sbjct: 461 LAYTVEAGDAAFYGPKLDF---VVRDALGREWQLGTIQVDYNLP--------ERFDLTYV 509

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG+ H    +     G++     ++    +     +P  +AP ++ ++ I        
Sbjct: 510 GPDGEPHRPVMIHRAPFGSLERFIGILI---EHFAGEFPLWLAPVQVVVVPITDRH---L 563

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++   L + G  V  D   E++ ++   A+    P+ ++VG + V+   V ++ R 
Sbjct: 564 AYAREVAQALREAGIRVEVDTRSERMNAKIRDAETQKVPVILVVGDQEVAQRTVAVRDRR 623

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           T  R    LE V+     R    
Sbjct: 624 TKERATRPLEAVVQDLVARVQAR 646


>gi|119504253|ref|ZP_01626333.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2080]
 gi|119459761|gb|EAW40856.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2080]
          Length = 569

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 129/303 (42%), Positives = 183/303 (60%), Gaps = 4/303 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DAEI SH+LMLR G+I + + GIY+W+PLG + +  V  ++REE
Sbjct: 1   MRASQFLLSTLKETPADAEIISHQLMLRAGLIRRVAAGIYNWMPLGLRVIRRVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+S+P +Q A+LW+ESGR++ YG E+ RL DR+++    GPTHEE++T + RS
Sbjct: 61  MCRAGALEISMPVVQPAELWLESGRWEQYGPELARLQDRHNRDFCLGPTHEEIITALGRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP  F+QIQ KFRDE+RPRFGVMRSREF+MKDAYSF       + +Y +M  +
Sbjct: 121 EIKSYKQLPLNFFQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHADQVSLEQTYWRMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y  IF RLGL    + A++G IGG  SHEF VLAD+GE  +  S    D+    E     
Sbjct: 181 YTAIFTRLGLNFRSVEADTGSIGGSHSHEFHVLADSGEDAIAFSDS-SDYAANVELAPAL 239

Query: 240 --DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                 S  + + ++  P   T D   E+   ++ +  +      E   I     +    
Sbjct: 240 VTPATASEITDLIEFATPRVKTIDDLVEQAGITITDTVKTLFVNGENDEIVALVLRGDHR 299

Query: 298 MSA 300
           ++A
Sbjct: 300 LNA 302



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/192 (34%), Positives = 107/192 (55%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P   T+D+      D+    +      RGIEVGHIF  GTKYS  M A     +GK   +
Sbjct: 376 PLIETADIREVIAGDASPCGQGALEIRRGIEVGHIFQLGTKYSEAMKAVVLNDEGKSVPM 435

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIWPD++APF+++L+ +     +    A E +Y +
Sbjct: 436 AMGCYGIGVTRIVAAAIEQNHDDQGIIWPDAMAPFEVALVPLNMDKSEAVATATEALYEQ 495

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L  +G +VF DD  E+ G +FA  +L+G P++V +G + +++  +E++ R +  ++ + +
Sbjct: 496 LLTMGVEVFMDDRKERPGVKFAQMELIGIPVRVTLGDRSLAEGNIELQERTSDQKQLIPV 555

Query: 432 EEVINYASHRFS 443
            E          
Sbjct: 556 SEASKAIVAMIR 567


>gi|167465772|ref|ZP_02330861.1| threonine-tRNA ligase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 419

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 161/442 (36%), Gaps = 35/442 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD       L + +    +  +G+  WLP G      +   I + + + G 
Sbjct: 4   LHLLEEAKKRDHRKLGKDLKIFS-FSREVGQGLPLWLPNGATIRRTLERYIVDLEEKLGY 62

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L + DL+  SG ++ Y ++M      +++ ++  P +      ++++ + SYR
Sbjct: 63  QHVYTPVLANVDLYKTSGHWEHYREDMFPPMQLDNEELVLRPMNCPHHMMVYKNELHSYR 122

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++    R E+     G+ R R   + DA+ F   P+  K  + ++     +++
Sbjct: 123 DLPIRIAELGTMHRYEMSGALTGLHRVRAMTLNDAHIFCR-PDQIKEEFARVITLIRQVY 181

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDFDDIIS 244
              G+     R                  D  +T  +  + +  +          +++  
Sbjct: 182 ADFGITDYRFRLS--------------YRDPQDTDKYFPNDEMWEMSQRMLKEVVEELRL 227

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  +L + + +S   ++    F    ++       + G
Sbjct: 228 PYYEAEGEAAFYGPKLDV---QIKTALKKEETLSTAQLD----FLLPERF----ELEYVG 276

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG+ H   +     G +  +  +     +      P  + P +  ++ +        D 
Sbjct: 277 EDGQKHRPVVIHR--GIVSTMERMTAFLLENFAGALPTWLCPVQAKILPV---SSAFNDY 331

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  RL + G  V  D   E++G +   + L   P  ++VG          ++ R  G
Sbjct: 332 AKEMEDRLKQAGIRVAADLRNEKLGYKIRESQLEKVPFMLVVGENEKQSGSFSVRRRGEG 391

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                S + +I          +
Sbjct: 392 DLGVHSADALIQMIREEIDTKK 413


>gi|120554655|ref|YP_959006.1| prolyl-tRNA synthetase [Marinobacter aquaeolei VT8]
 gi|152112927|sp|A1U1F0|SYP_MARAV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120324504|gb|ABM18819.1| prolyl-tRNA synthetase [Marinobacter aquaeolei VT8]
          Length = 577

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 125/237 (52%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +   +E P DAEI SH+LMLR GMI + + G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRASRYLIATQKETPSDAEIISHQLMLRAGMIRKLAAGLYTWLPLGLRTLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +P +Q A+LW ESGR++ YG E+LRL DR+ +   +GPTHEEV+TD+ R+
Sbjct: 61  MDKSGAQEVLMPAVQPAELWQESGRWEQYGGELLRLNDRHGRDFCFGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE RPRFGVMR+REF+MKDAYSF L  E    +Y  M  +
Sbjct: 121 ELKSYKELPANFYQIQTKFRDERRPRFGVMRAREFIMKDAYSFHLNAESLDETYKVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGL   P++A+SG IGG  SHEF VLA +GE  +  S    D+    E  
Sbjct: 181 YCNIFDRLGLDYRPVQADSGSIGGSSSHEFHVLASSGEDAIVFSTSG-DYAANIEKA 236



 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/193 (36%), Positives = 110/193 (56%), Gaps = 3/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A  +   D+ N    D+ P+        RGIEVGHIF  G KYS  M+A+     GK
Sbjct: 378 GRDAEISRVEDLRNVVEGDASPDGNGTLEIRRGIEVGHIFKLGNKYSKAMNASVLDEHGK 437

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  R+VAA IE +HD KGIIWPD++APF+++++ +      V  +A +K
Sbjct: 438 TSIMEMGCYGIGVSRIVAASIEQNHDEKGIIWPDAIAPFEVAIVTLNGHKSPVVAEAGDK 497

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y +L + G DV  DD  E+ G +FA  +L+G P + +V  + +S   +E K R    ++
Sbjct: 498 LYEQLRQAGYDVLLDDRNERPGVKFADIELIGIPHRFVVSERGLSAGTLEYKGRRDEEKQ 557

Query: 428 DMSLEEVINYASH 440
           D+ ++E +++   
Sbjct: 558 DIPVDEALSFLVK 570


>gi|262067494|ref|ZP_06027106.1| threonine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
 gi|291378856|gb|EFE86374.1| threonine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
          Length = 637

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 165/443 (37%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  K+   + +   RD      +L L    I ++  G   +LP G    + +  + R+E 
Sbjct: 226 RLKKHLKFMEEAEKRDHRKLGKELELF--FISEYGPGFPFFLPKGMVFRNVLIDLWRKEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G +++  P + + +LW  SG + +Y + M   ++ ++      P +       F+  
Sbjct: 284 EKAGYLQLETPIMLNKELWEISGHWFNYRENMYT-SEIDELEFAIKPMNCPGGVLSFKHQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     +   
Sbjct: 343 LHSYKDLPARLAELGKVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + + +L      +   + P     S E                   D    +     D
Sbjct: 402 IDKFYSKLFGFEYEIELSTKPEKAIGSQE-----------------IWDMAESALAGALD 444

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     I     A Y    D    K+ D++    +     ++    F    ++      
Sbjct: 445 KLGRKYKINPGDGAFYGPKLDF---KIKDAIGRMWQCGTIQLD----FNLPERFD----V 493

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G DG+ H    +     G++     ++   + G   +W   V    ++L      + 
Sbjct: 494 TYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMWLAPVQVKVLTL------ND 547

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEI 418
            C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V + +V I
Sbjct: 548 ECIPYAKEIMDKLQELGIRAELDDRNETIGYKIREANGKYKIPMQLIIGKNEVENKEVNI 607

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  +   SL+E  +Y    
Sbjct: 608 RRFGSKDQFPKSLDEFYDYVVDE 630


>gi|148235110|ref|NP_001079554.1| prolyl-tRNA synthetase 2, mitochondrial (putative) [Xenopus laevis]
 gi|28278090|gb|AAH44273.1| MGC53152 protein [Xenopus laevis]
          Length = 466

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 138/455 (30%), Positives = 222/455 (48%), Gaps = 44/455 (9%)

Query: 3   RSKYFLPI---------LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ + P           +  P +    S KLM++ G+I   + G + +LP   +A++ +
Sbjct: 33  LSRLYQPRSLWEVKSSETESKPNEPTSKSQKLMIKAGLIRPSNPGCFHYLPYTVRAMEKL 92

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++ +PTL SA LW +SGR+D  GKE+ RL DR+++    GPTHEE+
Sbjct: 93  IRLIDKEMQDIGGQKIDMPTLGSAALWRQSGRWDLMGKELFRLKDRHNQEYCLGPTHEEL 152

Query: 114 MTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T +  S    + + LP   YQI  KFRDE RP FG++R REF MKD Y+FD++ E +  
Sbjct: 153 VTHLVASEGGINNKELPLLLYQITRKFRDEQRPCFGLLRGREFYMKDMYTFDISEESAYE 212

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y  IF  LG+  + ++A++G IGG +SHEF + A+ GE ++       DF  
Sbjct: 213 TYRNVCDAYSNIFRALGVHFVKVQADTGNIGGKMSHEFHLPANIGEDRLLVCGSC-DFSA 271

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
             E    D+                             +   +    +GIE+GH FY GT
Sbjct: 272 NVELLLHDEK-------------------------NCPVCTGQLKETKGIEIGHTFYLGT 306

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS    A    +       +MG YGIG  R++AA +E   +   I WP  +AP+++ LI
Sbjct: 307 KYSHVFKANCYDSQKTPFLAEMGCYGIGVSRLLAASLEVLSNEDDIHWPGLIAPYQVCLI 366

Query: 353 NIKAHDQVCRD--ACEKIYARLSKV--GCD--VFWDDMG-EQIGSQFAVADLLGFPLQVI 405
           + K   +        E +Y  + +   G       DD     IG +   A ++G+P  ++
Sbjct: 367 SPKKGSKEIEAISVAETLYDDIIQSVCGLRDETVLDDRSYLTIGKRVKEAHMMGYPYVIV 426

Query: 406 VGSKFVSDSKV-EIKHRLTGIREDMSLEEVINYAS 439
           +G K +    + E++   T     +S E VI++  
Sbjct: 427 IGKKALETPSLFEVRSHNTDEVHFLSREGVIDFLR 461


>gi|182684576|ref|YP_001836323.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|182629910|gb|ACB90858.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
          Length = 660

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 156/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 242 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 299

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 300 VSGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 359

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 360 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 419

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 420 IDVYEDFNLTDYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 466

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 467 MGVDYFEAEGEAAFYGPKLDI---QIKTALGKEETLSTIQLD----FLLPERFD----LK 515

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG+DH   M   G+ +       I   +         +     +    I   ++  
Sbjct: 516 YIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 571

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 572 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRY 631

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S++  +       +N 
Sbjct: 632 GQKETQTVSVDNFVQAILADIANK 655


>gi|119476901|ref|ZP_01617182.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
 gi|119449708|gb|EAW30945.1| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
          Length = 576

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ +  ++E P DA + SH+LMLR GMI + S G+YSWLP+G + L  V AI+REE
Sbjct: 1   MRASQFLIATVKETPSDAVVISHQLMLRAGMIRKLSSGLYSWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P +Q ++LW ESGR+  YG E+LR+ DR++ +   GPTHEEV+TD+ R+
Sbjct: 61  MNKAGAQELLMPVVQPSNLWQESGRWQQYGPELLRITDRHNNSFCLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF    E  + +Y  M  +
Sbjct: 121 EIKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHNDQESLQQTYELMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF RLGL+  P+ A++G IGG+ SHEF VLAD+GE  +  S    DF    E
Sbjct: 181 YTKIFTRLGLRFRPVVADTGSIGGNASHEFHVLADSGEDDIAFSDS-SDFAANVE 234



 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 68/196 (34%), Positives = 109/196 (55%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                     D+ +    D  P+ K +    RGIEVGHIF  G KY+  + AT    +GK
Sbjct: 379 GRDCKTGRIEDIRDVVAGDPSPDGKGILHIKRGIEVGHIFQLGAKYAEALKATVLNENGK 438

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
           D  + MG YGIG  R+VAA IE ++D KGIIWP S+APF+I++I +         +   K
Sbjct: 439 DQTILMGCYGIGMTRIVAAAIEQNNDEKGIIWPASIAPFQIAIIPLNMQKSVDVAEQSNK 498

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y +LS++G +V  DD  E+ G +FA  +L+G P ++++G + + D K+E K R     +
Sbjct: 499 LYQQLSELGYEVLLDDRNERPGVKFADMELIGIPHRIVIGDRGLKDGKMEYKGRQDSENQ 558

Query: 428 DMSLEEVINYASHRFS 443
            + +  +I++ +   +
Sbjct: 559 HIDISNIIDFIATSIA 574


>gi|300778181|ref|ZP_07088039.1| threonine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
 gi|300503691|gb|EFK34831.1| threonine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
          Length = 639

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 155/444 (34%), Gaps = 38/444 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L +      +   G+  WLP G      +   + + Q 
Sbjct: 226 LTEYLERLEEAKRRDHRKLGKELGIFA-FSEKVGAGLPLWLPKGTALRRKLENFLSDAQK 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G   +  P + + +L+V SG +D YG++  +        +  +  P +     +I+++
Sbjct: 285 KGGYEFVMSPHIGAKELYVTSGHWDKYGEDSFQPIKTPNEGEEFLLKPMNCPHHCEIYKT 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  + +    +R E      G+ R R F   DA+ F  TP+     + K+  
Sbjct: 345 SQWSYRDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFC-TPDQLSEEFEKVID 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG +    +                  D    Q +   D       S   + 
Sbjct: 404 LTLYVFKSLGFEDFVTQVSLR--------------DPENKQKYIGSDENWEKAESAIINA 449

Query: 240 DDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +   L +++E    A Y    D     + D+L    ++    ++               
Sbjct: 450 AEKKGLKTVIEYGEAAFYGPKLDFM---VKDALGRKWQLGTIQVDYNLP--------ERF 498

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + G+D + H    +     G+M    A++  +  G   +W             I   
Sbjct: 499 DLHYIGSDNEKHRPVMIHRAPFGSMERFIAILLENTAGDFPLW------LSPDQFIILPI 552

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D  +K+   L         DD  E+ G +   A+L   P  ++VG     +  + 
Sbjct: 553 SEKYVDYSKKVSQFLENHDISGQIDDRNEKTGKKIRDAELKKIPFMLVVGENEEKEGTIS 612

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++ R  G    M LE+ + Y    
Sbjct: 613 VRRRGEGDLGVMKLEDFVAYFKKE 636


>gi|260424668|ref|ZP_05732876.2| threonine--tRNA ligase [Dialister invisus DSM 15470]
 gi|260402758|gb|EEW96305.1| threonine--tRNA ligase [Dialister invisus DSM 15470]
          Length = 647

 Score =  248 bits (634), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 143/443 (32%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           ++     +   RD      +L L +   H+   G   + P G    + + A  RE     
Sbjct: 242 RFLFVRAEAEKRDHRKLGKQLNLFS--FHEEGPGFPFFHPKGMVIRNELIAYERELFREF 299

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + S  LW++SG +D Y + M      +++     P +       ++++  S
Sbjct: 300 GYEEIMTPIILSKKLWLQSGHWDHYKENM-YFTQIDEEDYAVKPMNCPGGILYYKTNQHS 358

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +  +  R EL     G+ R R F   DA+ F    +            Y +
Sbjct: 359 YRELPKRVGEFGIVHRHELHGALHGLFRVRVFTQDDAHIFMTQDQMKDEVIK-TMEMYRK 417

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   GL+   +   + P     S E                   +    +     +   
Sbjct: 418 LYSVFGLEYH-VELSTRPENSMGSEE-----------------LWEISTNALRDAVEAAG 459

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D H           K    R  + G I     +        + 
Sbjct: 460 VPYVINEGDGAFYGPKLDFHI----------KDCLGRTWQCGTI-QMDMQLPERFDVNYV 508

Query: 304 GADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG+ H  V +   G G++     ++     G    W           + +    +   
Sbjct: 509 GEDGEKHRAVMLHRAGYGSLERFIGILIEHFAGAFPSW------IAPVQVKVVPVTEKHM 562

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +    +   LS     V  ++  + +G +   A +   P  ++VG K ++   V ++ R 
Sbjct: 563 NYARSVADALSASNVRVEIEEGNDTLGYKIRKAQMEKVPYTLVVGDKEMNGHTVSVRSRK 622

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G    + +   ++       + 
Sbjct: 623 NGDEGSLPVAVFVSNLIREIRDR 645


>gi|89093619|ref|ZP_01166566.1| prolyl-tRNA synthetase [Oceanospirillum sp. MED92]
 gi|89082015|gb|EAR61240.1| prolyl-tRNA synthetase [Oceanospirillum sp. MED92]
          Length = 574

 Score =  248 bits (634), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 128/279 (45%), Positives = 177/279 (63%), Gaps = 3/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +  ++E P DAE+ SH+LMLR G+I + + G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRTSQYLISTVKETPSDAEVISHQLMLRAGLIRKVASGLYNWLPLGLRTLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA+E+ +P +Q A+LW ESGR++ YG E+LR+ DR+++    GPTHEEV+TD+ R 
Sbjct: 61  MDKSGAMEVLMPAVQPAELWEESGRWEQYGPELLRVNDRHNREFCVGPTHEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +  +  + +Y+ M  +
Sbjct: 121 EIKSYKQLPANFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHVGQDSLQETYDVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE--NTD 238
           Y  IF RLGL   P+ A++G IGG  SHEF VLAD+GE  +    +  D+    E     
Sbjct: 181 YTNIFTRLGLDFRPVLADTGSIGGATSHEFHVLADSGEDDIAF-SNVSDYAANVELAEAM 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             +       VE  T        +       SLP  K +
Sbjct: 240 APEGDLAAPTVEMTTVDTPDAKTIDELVAQFSLPIEKTI 278



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 67/198 (33%), Positives = 102/198 (51%), Gaps = 5/198 (2%)

Query: 251 QWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +        +D+ N    D     E      RGIEVGHIF  G KYS  + A     +GK
Sbjct: 376 ERDVALPEVADIRNVVEGDPSPCGEGTLEIKRGIEVGHIFQLGQKYSEALKAEVLDQNGK 435

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEK 367
              + MG YGIG  RV+AA IE +HD  GIIWP+++APF I+LI +        ++  ++
Sbjct: 436 SVVMNMGCYGIGVTRVIAAAIEQNHDDGGIIWPEAIAPFHIALIPLQYDKSAEVKELTDR 495

Query: 368 IYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +Y  L + G DV  DD  +    G +FA  DL+G P +V++  +      +E K R    
Sbjct: 496 LYQELQQAGYDVIVDDRDKKTSPGVKFADMDLMGIPHRVVISPRGNEAGTLEYKGRRDDE 555

Query: 426 REDMSLEEVINYASHRFS 443
           ++D+ ++EV+   + R +
Sbjct: 556 KQDVQIDEVLPLLAERIN 573


>gi|302035784|ref|YP_003796106.1| threonyl-tRNA synthetase [Candidatus Nitrospira defluvii]
 gi|300603848|emb|CBK40180.1| Threonyl-tRNA synthetase [Candidatus Nitrospira defluvii]
          Length = 651

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/433 (18%), Positives = 144/433 (33%), Gaps = 41/433 (9%)

Query: 11  LQENPR-DAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           L+E  R D      +L L T  I  +   G+  W P G      +    RE+  + G   
Sbjct: 239 LEEIKRRDHRKLGKELDLIT--IQDEIGPGLVLWHPKGSLIRLLIENFWREQHIKDGYDL 296

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +   DLW  SG  D Y + M              P +      I++SH++SYR+L
Sbjct: 297 VYSPHVARLDLWKTSGHVDYYRENMFASMKLEGSEYQLKPMNCPFHIMIYKSHMRSYRDL 356

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  + ++   +R E      G++R R F   DA+ F   P+  +   +++      +   
Sbjct: 357 PIRYGELGTVYRYERTGVLHGLLRVRGFTQDDAHLFCR-PDQIEAEVSRVLDFTFFVLGT 415

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   + P     S E                        +             
Sbjct: 416 FGFTEFEVYLSTRPDKSVGSEENWT-----------------IATNALEAALKSRGVAYE 458

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           +       Y    D+   K+ D L  + + S   ++  +               + G DG
Sbjct: 459 VDPGEGVFYGPKIDI---KIKDVLGRSWQCSTVQVDFNNP--------ERFKLAYTGEDG 507

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           K H    +    +G++     ++   + G    W   V    +++          ++   
Sbjct: 508 KAHQPIMIHRALMGSIERFFGILIEHYAGAFPTWLAPVQAVVLTIT------DNQQEFAA 561

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           KI + L   G  V  D   E+IG +   A+    P  ++VG K V    V ++ R     
Sbjct: 562 KIVSTLKSHGFRVEADLRNEKIGFKIREAEKNKIPYMLVVGDKEVQSGMVAVRGRSGANH 621

Query: 427 EDMSLEEVINYAS 439
             M +E  +    
Sbjct: 622 GSMPIEAFLELLR 634


>gi|25010739|ref|NP_735134.1| threonyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|77410759|ref|ZP_00787117.1| threonyl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|73919827|sp|Q8E693|SYT_STRA3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|23095093|emb|CAD46328.1| theronyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|77163138|gb|EAO74091.1| threonyl-tRNA synthetase [Streptococcus agalactiae CJB111]
          Length = 647

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 164/449 (36%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   +E   RD      +L L   M++ +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLKRREEAKERDHRKLGKELDLF--MVNPEVGQGLPFWLPNGATIRRELERYIVDKEI 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P + S + +  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 285 ASGYQHVYTPPMASVEFYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIEVYKHH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + DA+ F  TPE  K  + K    
Sbjct: 345 VHSYRELPIRIAELGMMHRYEKSGALTGLQRVREMTLNDAHIFV-TPEQIKDEFLKALNL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+    L     R            +     D  E          +          D
Sbjct: 404 IAEIYEDFNLTDYRFRLS-----YRDPEDKHKYYDNDEM--------WENAQAMLKEAMD 450

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D        E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 451 DFGLDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 499

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H    +   GI  M    A++  ++ G    W          +  I   ++
Sbjct: 500 KYIGADGEEHRPIMIHRGGISTMERFTAILIETYKGAFPTWLA-----PQQVSVIPISNE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   A     P Q+IVG K + +  V ++
Sbjct: 555 AHIDYAWEVARVLKDRGIRAEVDDRNEKMQYKIRAAQTQKIPYQLIVGDKEMEEKAVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +   E  S+EE +          +RP
Sbjct: 615 RYGSKATETKSIEEFVESILADIARKSRP 643


>gi|282882529|ref|ZP_06291150.1| threonine--tRNA ligase [Peptoniphilus lacrimalis 315-B]
 gi|281297671|gb|EFA90146.1| threonine--tRNA ligase [Peptoniphilus lacrimalis 315-B]
          Length = 636

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 149/446 (33%), Gaps = 41/446 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  ++     +   RD      +L L +  +H+   G   + P G    +N+ +  +   
Sbjct: 226 KLDEFIEKREEAEKRDHRKLGRELDLFS--MHEEGPGFPFFHPNGMITRNNLLSWWKNVL 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + + DLW  SG +D Y + M    + +++     P +    T I+ + 
Sbjct: 284 QERGYGEILTPVILNEDLWHRSGHWDHYKENM-YFTEIDEEGYAVKPMNCPGSTLIYSTT 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR+LP  + +  L  R EL     G+ R R F   DA+ + L  +     +    + 
Sbjct: 343 PHSYRDLPLRYAEFGLVHRHELSGALHGLFRVRSFTQDDAHIYCLPNQIKSEVFE--IID 400

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              + +        +   + P                           +    +     +
Sbjct: 401 LANLLYDTFGFKYSVELSTRP-----------------DDYMGDLGSWNEAEKALKEALE 443

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +     +I E   A Y    D H E   D++    +     ++    F            
Sbjct: 444 EKGMPYTINEGDGAFYGPKIDYHLE---DAIGRTWQCGTIQLD----FQLPQ----NFEL 492

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+   DG       +     G++     ++     GK  +W           + I    +
Sbjct: 493 TYVAEDGSKKRPVMLHRALFGSVERFMGILIEHFAGKFPLW------LSPVQVEIIPVSE 546

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +    +++ +L K G  V  D+  E++G +   A L      +++G K     K+ ++
Sbjct: 547 KFKPYAGEVFDQLKKAGIRVKIDERAEKVGYKIREAQLKKVNYMLVIGEKETESHKLSVR 606

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R     +D+ + + I        + 
Sbjct: 607 KRSGEEVKDVEVSKFIEDLKKEIESK 632


>gi|220934299|ref|YP_002513198.1| prolyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
 gi|254782924|sp|B8GPP4|SYP_THISH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219995609|gb|ACL72211.1| prolyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 574

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 122/235 (51%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++ L  L+E P DAE+ SH+LMLR GMI + + G+YSW PLG + L  V  ++R+E
Sbjct: 1   MRATRFPLATLKETPADAEVISHQLMLRAGMIRRLASGLYSWTPLGLRVLRKVEGLVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+ +   +GPTHEEV+TD  R 
Sbjct: 61  MDRAGALELLMPAVQPAELWQESGRWEQYGPELLRLKDRHMREFCFGPTHEEVITDYVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  +YQIQ KFRDE+RPRFGVMR+REFLMKDAYSF +  +  K +Y +M  +
Sbjct: 121 EVKSYRQLPVNYYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHVDEDSLKETYARMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL    + A++G IGG+ SHEF VLAD+GE  +  S    D+    E
Sbjct: 181 YTRIFTRCGLDFRAVLADTGSIGGNASHEFHVLADSGEDAIAFSD-VSDYAANVE 234



 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 109/189 (57%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +      RGIEVGHIF  G KYS  M AT     G+   V MG
Sbjct: 383 PVADLRNVVAGDPSPDGQGSLQIRRGIEVGHIFQLGRKYSEAMGATVLDEQGRSLVVTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSK 374
            YGIG  RVVAA IE +HD +GIIWP+++APF ++L  I A   Q  R+A + +Y RL  
Sbjct: 443 CYGIGVSRVVAAAIEQNHDAQGIIWPEALAPFTVALCPINAQKSQRLREAADALYERLLN 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +VF+DD G + G+ FA  +L+G P ++++G + +   ++E K R       ++L+ V
Sbjct: 503 AGFEVFYDDRGLRPGAMFADMELIGIPHRLVLGERGLDAGEIEYKGRRDTDTTQVALDGV 562

Query: 435 INYASHRFS 443
           +++   R +
Sbjct: 563 LDFLRQRMN 571


>gi|332184284|gb|AEE26538.1| Threonyl-tRNA synthetase [Francisella cf. novicida 3523]
          Length = 634

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 142/443 (32%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L      + S GI  W   G +    V   +R   N+ G
Sbjct: 230 YLNMLEEAEKRDHRKIGKVLDLF--HFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG    Y + M       ++     P +      ++ + + SY
Sbjct: 288 CSEIRTPLIADFSLWEKSGHASKYAENMF-ATKSENRDFAIRPMNCPTCVQVYNTKLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R+E      G++R R F   D + F    +  +     +   +   
Sbjct: 347 RDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIFCTPEQVEEEVILMVQQCFEV- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++    P       E                   D          D    
Sbjct: 406 YKDFGFNDFAVKIALRPENRIGDDE-----------------TWDKSEQMLKNALDANNV 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              ++    A Y    + H   L D++  + +     ++       G        AT+  
Sbjct: 449 SYELLPGEGAFYGPKIEFH---LKDAIGRSWQCGTIQLDFSMPQRLG--------ATYID 497

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G     V +    +G++     ++   + G   +W           + +        D
Sbjct: 498 KNGDKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLW------LAPFQVAVMGISNNQDD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C++++  L K G     D   E+IG +     LL  P  VI+G        + I+    
Sbjct: 552 YCKEVFTMLEKNGIRTKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIRKHSG 611

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                MS+++   +   +    +
Sbjct: 612 EDLGQMSVDDFCAFLDKQIQAKK 634


>gi|56964462|ref|YP_176193.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|56910705|dbj|BAD65232.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 643

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 163/439 (37%), Gaps = 32/439 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L +   +  +  +G+  WLP G      +   I +++ R G 
Sbjct: 235 LRLLEEAKERDHRKLGKELGIFA-LSPKVGQGLPLWLPKGATIRRIIERYIVDKEERLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S++L+  SG +D Y  +M    + +++ ++  P +      +++  ++SYR
Sbjct: 294 QHVYTPILGSSELYKTSGHWDHYQDDMFPPMEMDNETLVLRPMNCPHHMMVYKQDMRSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++ +  R E+      ++    +  +       P+  K  + ++      ++ 
Sbjct: 354 QLPLRIAELGMMHRYEMSGAVSGLQRVRGMTLNDAHIFCRPDQIKEEFVRVVRLIQEVYK 413

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISL 245
             GL     R                  D  + + +   D M     +      D +   
Sbjct: 414 DFGLNDYKFRLS--------------YRDPEDKEKYFDDDDMWNKAQAMLKEAMDTLGLP 459

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                   A Y    DV   ++  +L + + +S   ++    F    ++      T+ G 
Sbjct: 460 YYEAIGEAAFYGPKLDV---QVKTALGKEETLSTVQLD----FLLPERFD----LTYVGE 508

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DGK H   +     G +  +   +    +      P  +AP ++ +I +   ++V  D  
Sbjct: 509 DGKLHRPVVVHR--GVVSTMERFVAFLLEEYKGALPTWLAPVQVQVIPV--SNEVHLDYA 564

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +++  +L + G  V  DD  E++G +   A +   P  +++G K V+   V ++      
Sbjct: 565 KRVIEQLQQAGVRVEIDDRDEKLGYKIREAQIQKIPYMLVLGDKEVAAEAVNVRKYGEQA 624

Query: 426 REDMSLEEVINYASHRFSN 444
                L   ++        
Sbjct: 625 SSSQPLSVFVDEIGKEARK 643


>gi|301156314|emb|CBW15785.1| threonyl-tRNA synthetase [Haemophilus parainfluenzae T3T1]
          Length = 643

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 143/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 EYDYQEVKGPFMMDRVLWEKTGHWQNY-GDLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G ++I ++  + P                      + D  D            
Sbjct: 405 YDIYSTFGFQNIQVKLSTRPEKR-----------------IGADDMWDRAEAGLAAALAH 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    +     L D L    +     ++               +A+
Sbjct: 448 NGLEYEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTIQLDFALPGRL--------NAS 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G    W   V    +++         
Sbjct: 497 YVAEDNDRRTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPVQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QADYVQKVVKQLSDAGLRVKADLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE       +    
Sbjct: 611 RKGADLGTFTIEEFAEILKSQVRQR 635


>gi|15459130|gb|AAL00276.1| Threonyl-tRNA synthetase 1 [Streptococcus pneumoniae R6]
          Length = 660

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 156/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 242 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 299

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 300 VSGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 359

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 360 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 419

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 420 IDVYEDFNLTDYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 466

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 467 MGVDYFEAEGEAAFYGPKLDI---QIKTALGKEETLSTIQLD----FLLPERFD----LK 515

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG+DH   M   G+ +       I   +         +     +    I   ++  
Sbjct: 516 YIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 571

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 572 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRY 631

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S++  +       +N 
Sbjct: 632 GQKETQTVSVDNFVQAILADIANK 655


>gi|121997498|ref|YP_001002285.1| prolyl-tRNA synthetase [Halorhodospira halophila SL1]
 gi|152112924|sp|A1WUX1|SYP_HALHL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|121588903|gb|ABM61483.1| prolyl-tRNA synthetase [Halorhodospira halophila SL1]
          Length = 568

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 130/276 (47%), Positives = 174/276 (63%), Gaps = 1/276 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++ L   +E P DAEI SH+LMLR GMI + S G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRVTRFPLSTTRETPADAEIVSHQLMLRAGMIRRLSSGLYTWLPLGLRVLQKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ESGR++ YG E+LR+ DR+D+   +GPTHEEV+TD+FR 
Sbjct: 61  MNRAGALEVLMPAVQPAELWQESGRWEKYGPELLRIRDRHDREGCFGPTHEEVITDLFRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP  +YQIQ KFRDE+RPRFGVMR+REFLMKDAYSF L  +  +  Y +M  +
Sbjct: 121 EIRSYRQLPVNYYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLDDDDLRAEYQRMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDF 239
           Y RIF R GL   P+ A++G IGG +SHEF+VLAD+GE  +  C        +       
Sbjct: 181 YCRIFQRTGLAFRPVEADTGAIGGSVSHEFMVLADSGEDAIAVCEASGYAANVELAPAVA 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                     E+          +     +  LPE +
Sbjct: 241 PTEPRPAPQAERAEVATPGQRTIAEVAAYLGLPEAR 276



 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 73/190 (38%), Positives = 105/190 (55%), Gaps = 2/190 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P   T+D+      D  P+ +      RGIEVGHIF  GT YS  M A+     G++  V
Sbjct: 378 PEPETADLREVTAGDPSPDGEGTLTLRRGIEVGHIFQLGTTYSEAMGASVLDEQGQERTV 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  RVVAA IE +HD +GI WP  +APF+++L+ IKA D    +A E +YA L
Sbjct: 438 TMGCYGIGVSRVVAAAIEQNHDDRGICWPAPIAPFQVALVAIKAEDPAVAEAAEALYADL 497

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +  G DV +DD   + G +FA  +L+G P +V+V  + + +  VE K R       +   
Sbjct: 498 TASGIDVLYDDRDARPGVKFADMELIGIPHRVVVSPRAIQEGSVEYKGRQDADPTHVPRA 557

Query: 433 EVINYASHRF 442
           E++ +  +R 
Sbjct: 558 EIVTWLKNRL 567


>gi|119946895|ref|YP_944575.1| prolyl-tRNA synthetase [Psychromonas ingrahamii 37]
 gi|152112944|sp|A1SZR1|SYP_PSYIN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119865499|gb|ABM04976.1| prolyl-tRNA synthetase [Psychromonas ingrahamii 37]
          Length = 571

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 130/390 (33%), Positives = 188/390 (48%), Gaps = 21/390 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR + Y L   +E P DA I SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTNYLLSTQKEAPSDAVIVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G +E+ +P +Q ADLW+E+GR+D YG E+LR+ DR+ +  + GPTHEEV+T++ R 
Sbjct: 61  MERAGGVEVLMPIVQPADLWLETGRWDQYGGELLRIKDRHTRDFVLGPTHEEVITELVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE RPRFGVMR+REF MKDAYSF +     + +Y KMF +
Sbjct: 121 EVNSYKQLPLNLFQIQTKFRDETRPRFGVMRAREFTMKDAYSFHMDQACLEKTYQKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN---- 236
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA +GE  +       D+    E     
Sbjct: 181 YCRIFDRLGLEYRPVIADTGSIGGSASHEFHVLAQSGEDAIVF-STESDYAANIEKAEAL 239

Query: 237 -------TDFDDIISLNSI----VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                      ++  L++     + +  + +    +   + LF    +        + + 
Sbjct: 240 APSTVLAAPTAEMGLLDTPNAKTIAELVSKHGIAIEKTVKTLFVKASDQIETELIALIIR 299

Query: 286 HIFYFGTKYSLP-----MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
                    +           F         V  G   +G + +    I          +
Sbjct: 300 GDHELNEIKAENLASVAAPLEFASESEIRALVNAGPGSLGPVSLPVPFIVDRSVAVMSDF 359

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                       NI     V     E +  
Sbjct: 360 SAGANIDNKHYCNINWGRDVELAQVEDLRN 389



 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 110/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPM 298
           D     +I        A   D+ N    D           ARGIEVGHIF  G  Y+  M
Sbjct: 366 DNKHYCNINWGRDVELAQVEDLRNVVEGDPSPCGSGTLSMARGIEVGHIFQLGDTYTKAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +A      GK+  + MG YGIG  R+VAA IE ++D  GIIW +++APF + ++ +    
Sbjct: 426 NAGVLNQQGKNQILTMGCYGIGISRIVAAAIEQNNDKNGIIWNNTLAPFSVVIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  EK YA L   G +V +DD  E+ G  FA A+L+G P  +++G + + +  +E
Sbjct: 486 SHRVAELAEKYYAELQAAGIEVLFDDRKERPGIMFADAELMGIPHTLVIGDRSLDNGVIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K RL+G++++++++EVIN+   + +
Sbjct: 546 YKDRLSGVKQEVAIDEVINFIKAQLA 571


>gi|39996615|ref|NP_952566.1| threonyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|73919793|sp|Q74D04|SYT_GEOSL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|39983496|gb|AAR34889.1| threonyl-tRNA synthetase [Geobacter sulfurreducens PCA]
          Length = 636

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/440 (19%), Positives = 144/440 (32%), Gaps = 40/440 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +        G   W P G      +    R E  + G
Sbjct: 232 YLEKIEEAKRRDHRKLGRELDLFS-FSDDVGAGFVIWHPKGAMLRTLLEDFERREHLKRG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   +LW  SG YD+Y + M    +   +     P +      I++S ++SY
Sbjct: 291 YDIVVGPQILKTELWQRSGHYDNYRENM-YFTEVEGQGFGIKPMNCLSHMMIYKSQLRSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F+++    R E      G++R R F   DA+    TPE        +      +
Sbjct: 350 RDLPLRFFELGTVHRHERAGVLHGLLRVRCFTQDDAHILC-TPEQLDAEIKGVISFVNDV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G         + P     S E                   +    +      D   
Sbjct: 409 MGIFGFDYEM-ELSTRPEKSIGSDE-----------------DWERATGALLGALKDSGR 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   KL DSL    + +    +    F    ++      T+  
Sbjct: 451 PYEINEGDGAFYGPKIDI---KLRDSLDRKWQCATIQCD----FTLPERFD----LTYVD 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+      +    +G++     V+     G   +W   V    +++          + 
Sbjct: 500 ADGERKRPVMVHRVILGSIERFIGVLIEHFAGNFPLWLSPVQAIVLTVT------DNQQP 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +++  L   G  V  D   E++G +   A L   P  +++G K V    V  + R  
Sbjct: 554 YAAQVFETLRTNGVRVQKDFRNEKLGFKIREAQLQKIPYMLVIGDKEVESGTVTPRFRDG 613

Query: 424 GIREDMSLEEVINYASHRFS 443
                M  EE + + +    
Sbjct: 614 SNLAAMKPEEFVAFVNDEVK 633


>gi|299135910|ref|ZP_07029094.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
 gi|298602034|gb|EFI58188.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
          Length = 680

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 88/437 (20%), Positives = 154/437 (35%), Gaps = 36/437 (8%)

Query: 11  LQENP-RDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           L+E   RD  +   +L L +  I + +  G+  W P G      +   +R E  R G   
Sbjct: 270 LEEIKARDHRVLGKQLDLFS--IQEVAGAGLIFWHPKGGLIRKTMEDWMRAECVRRGYNL 327

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +   +LW  SG    Y   M    + +D      P +      I+++  KSYR+L
Sbjct: 328 VVTPHIMRRELWKISGHEGYYSDNMYPPMELDDAEYRLKPMNCPGHILIYKNSPKSYRDL 387

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  + ++   +R E      G++R R F   DA+ F  TP+  +            +   
Sbjct: 388 PVRYAELGNVYRYERSGTMHGLLRVRGFTQDDAHIFC-TPDQIEDEVVACIEFAQSVLTT 446

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G     +   +                        S D     I S  T          
Sbjct: 447 FGFADFKVELST-------------WDPKKPQDYTGSADHWATAINSLKTALGRKNIPFV 493

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
            +    A Y    DV   KL D L    ++S    +    F    ++       + G DG
Sbjct: 494 EIPGEAAFYGPKIDV---KLVDVLGRLWQLSTVQFD----FNLPARF----ELEYIGEDG 542

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H    +     G++     V+   + G   +W   +AP ++ L+ I   ++      E
Sbjct: 543 ERHRPVMVHRALFGSVERFFGVLIEHYAGAFPMW---LAPVQVGLVPI--SNEKHLAYAE 597

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + ARL   G  V  D    ++ ++     L  FP  +++G K  +   V ++ R  G  
Sbjct: 598 SVKARLEAAGLRVELDGGNGKMNAKIRDFGLQKFPFILVLGDKEAASDSVSVRVRAKGDE 657

Query: 427 EDMSLEEVINYASHRFS 443
             ++++E I  A     
Sbjct: 658 GSVTVDEFIARAKKLVD 674


>gi|291486342|dbj|BAI87417.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
          Length = 638

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 146/442 (33%), Gaps = 44/442 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   M  + + G+  +LP GQ   + +    RE Q   G 
Sbjct: 235 LHMLEEAAKRDHRKLGKQLGLF--MFSEEAPGMPFYLPKGQIVRNELERFSRELQTNAGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y   M   ++ +D      P +      IF++ + SYR
Sbjct: 293 NEVRTPFMMNQRLWEQSGHWDHYRDNM-YFSEVDDTRFAMKPMNCPGHMLIFKNSLYSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R E      G++R R F   DA+ F    +        + +      
Sbjct: 352 DLPIRMAEFGQVHRHEYSGALNGMLRVRTFCQDDAHIFVREDQIESEIKEAIRLI----- 406

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                           +      E+ V   T       +    +    +     +++   
Sbjct: 407 --------------DEVYRTFGFEYSVELSTRPEDSLGNDSLWEASERALARVLEELGLS 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    D H   + D+L  + + +   ++    F    K+      T+   
Sbjct: 453 YEINEGDGAFYGPKIDFH---IKDALKRSHQCATIQLD----FQMPEKFD----LTYINE 501

Query: 306 DGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +     +    +     R    +IE       +                     V  D
Sbjct: 502 HNEKVRPVVIHRAVFGSIDRFFGILIEHYGGAFPVWLAPLQVQIIPV-------SHVHLD 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C K+ A L + G     D+  E++G +   + +   P  +++G     ++ V ++    
Sbjct: 555 YCRKVQAELKQAGIRAGIDERNEKLGYKIRESQVQKIPYVLVLGDHEEQENAVNVRRFGH 614

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              E +  +   +    +  N 
Sbjct: 615 QQSEHVPFQTFKDKLVKQVENR 636


>gi|188533062|ref|YP_001906859.1| prolyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
 gi|226701287|sp|B2VDZ9|SYP_ERWT9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|188028104|emb|CAO95961.1| Prolyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
          Length = 572

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 127/292 (43%), Positives = 176/292 (60%), Gaps = 20/292 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LRL DR+D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRLVDRSDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQGSLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y + F R+GL    ++A++G IGG  SHEF VLA +GE  +       D+    E  +  
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDIVF-STGSDYAANIEMAEAL 239

Query: 240 ------------------DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                              +  ++  +VEQ+T P   T      K       
Sbjct: 240 PPAGGRADATQERVQFATPEAKTIADLVEQFTLPIEKTVKTLMVKATKESGH 291



 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/192 (34%), Positives = 111/192 (57%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K   +  RGIEVGHIF  GTKYS  M A+ +G DG++  +
Sbjct: 380 PLPRIADIRNVVEGDASPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKASVQGEDGRNQTL 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIW  ++APF+++++ +        ++  E +Y +
Sbjct: 440 TMGCYGIGITRIVAAAIEQNHDERGIIWSPALAPFQVAILPMNMQKSFRVKELAEALYQQ 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + + + ++E K R  G +  +  
Sbjct: 500 LRAKGIDVILDDRKERPGVMFADMELIGVPHTIVIGERNLDNDEIEYKARRGGEKRLIKT 559

Query: 432 EEVINYASHRFS 443
           +E++++     +
Sbjct: 560 DEIVDFLMAELA 571


>gi|320540052|ref|ZP_08039708.1| prolyl-tRNA synthetase [Serratia symbiotica str. Tucson]
 gi|320029901|gb|EFW11924.1| prolyl-tRNA synthetase [Serratia symbiotica str. Tucson]
          Length = 570

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+ENP DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKENPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   AIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNANAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFG+MRSREFLMKDAYSF  + +  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEVRPRFGIMRSREFLMKDAYSFHTSQDSLQVTYDAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL   P+ A++G IGG  SHEF VLAD+GE  +       D+    E
Sbjct: 181 YNKIFSRMGLDFRPVHADTGSIGGSASHEFQVLADSGEDDIVF-STGSDYAANIE 234



 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 73/192 (38%), Positives = 113/192 (58%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ +   +  RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 378 PLPQVADIRNVVEGDASPDGQGTLLIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVL 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     +   E +Y  
Sbjct: 438 TMGCYGIGVTRVVAAAIEQNHDERGIIWPDTIAPFQVAILPMNMHKSFRVQALAEDLYTT 497

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G ++ +  
Sbjct: 498 LRSHGIDVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEIEYKNRRIGEKQMIKT 557

Query: 432 EEVINYASHRFS 443
           EE++N+   +  
Sbjct: 558 EEIVNFLLRQIK 569


>gi|318605898|emb|CBY27396.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 642

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/442 (15%), Positives = 141/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   R+      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRNHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S +    A+                         +   
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWTRAED-----------------DLAAALTENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++    F    + S    A++ G
Sbjct: 451 PFDYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----ASYIG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G+M     ++   + G    W   V    +++           D
Sbjct: 500 ENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTWLAPVQVVVMNIT------DSQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R  
Sbjct: 554 YVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + +  V++       + 
Sbjct: 614 KDLGSLDVNVVVDQLLAEIRSR 635


>gi|22536875|ref|NP_687726.1| threonyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76787804|ref|YP_329459.1| threonyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|76799413|ref|ZP_00781564.1| threonyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77405954|ref|ZP_00783034.1| threonyl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|77413516|ref|ZP_00789706.1| threonyl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|73919828|sp|Q8E0L9|SYT_STRA5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123771973|sp|Q3K1Z4|SYT_STRA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|22533725|gb|AAM99598.1|AE014224_1 threonyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76562861|gb|ABA45445.1| threonyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|76585236|gb|EAO61843.1| threonyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77160460|gb|EAO71581.1| threonyl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|77175465|gb|EAO78254.1| threonyl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 647

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 164/449 (36%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   +E   RD      +L L   M++ +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLKRREEAKERDHRKLGKELDLF--MVNPEVGQGLPFWLPNGATIRRELERYIVDKEI 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P + S + +  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 285 ASGYQHVYTPPMASVEFYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIEVYKHH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + DA+ F  TPE  K  + K    
Sbjct: 345 VHSYRELPIRIAELGMMHRYEKSGALTGLQRVREMTLNDAHIFV-TPEQIKDEFLKALNL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+    L     R            +     D  E          +          D
Sbjct: 404 IAEIYEDFNLTDYRFRLS-----YRDPEDKHKYYDNDEM--------WENAQAMLKEAMD 450

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D        E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 451 DFGLDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 499

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H    +   GI  M    A++  ++ G    W          +  I   ++
Sbjct: 500 KYIGADGEEHRPIMIHRGGISTMERFTAILIETYKGAFPTWLA-----PQQVSVIPISNE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   A     P Q+IVG K + +  V ++
Sbjct: 555 AHIDYAWEVARVLKDRGIRAEVDDRNEKMQYKIRAAQTQKIPYQLIVGDKEMEEKAVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +   E  S+EE +          +RP
Sbjct: 615 RYGSKATETKSIEEFVESILADIARKSRP 643


>gi|182419627|ref|ZP_02950872.1| threonyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237665561|ref|ZP_04525549.1| threonine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376517|gb|EDT74094.1| threonyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237658508|gb|EEP56060.1| threonine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 636

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 161/441 (36%), Gaps = 41/441 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L T    +   G   +LP G    +++    R+     G 
Sbjct: 233 LNNLEEAKKRDHRKLGKELKLFT--FAEEGPGFPFFLPKGVILKNSLIDFWRKIHYEAGY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +E+  P + +  LW  SG +  Y + M      +D+     P +      +++S   SYR
Sbjct: 291 VEVETPIMLNKKLWETSGHWYHYKENMYTSM-IDDEEFALKPMNCPGGMIVYKSDSHSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + P    ++    R EL     G+MR R F   DA+ F L  +        +     +++
Sbjct: 350 DFPMRVGELGRVHRHELSGALHGLMRVRAFTQDDAHIFMLPEQIKSE-IKGVVELIDKVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G K   +   + P     S E   +A+                  S     D++   
Sbjct: 409 SIFGFKYH-VELSTRPEDSMGSDEEWKMAED-----------------SLRGALDELNLQ 450

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    D H E   DS+    +     ++    F    ++       + G+
Sbjct: 451 YVINEGDGAFYGPKIDFHLE---DSIGRTWQCGTIQLD----FQLPQRF----ELEYVGS 499

Query: 306 DGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D + H    +     G++     ++     GK   W   +AP ++ ++ I        + 
Sbjct: 500 DNEKHRPIVIHRVIFGSIERFIGILIEHFAGKFPTW---LAPVQVKVLPISDK---FNNY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           C+++  + ++ G  V  D   E+IG +   A     P  VI+G K   +  + ++ R  G
Sbjct: 554 CDEVVKQFNENGIRVEIDQRNEKIGYKIREARNERVPYIVIIGEKEEGEGNISLRSRKNG 613

Query: 425 IREDMSLEEVINYASHRFSNN 445
               ++++++I   ++   N 
Sbjct: 614 DEGSINVKDLIERINNEIKNK 634


>gi|241668765|ref|ZP_04756343.1| threonyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877296|ref|ZP_05250006.1| threonine-tRNA ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254843317|gb|EET21731.1| threonine-tRNA ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 635

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 142/443 (32%), Gaps = 41/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L      + S GI  W   G +    V   +R    + G
Sbjct: 231 YLHMLEEAEKRDHRKIGKALDLF--HFQEDSPGIAFWHDSGVRIWREVEDYMRASNKKYG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG    Y + M       ++     P +      ++ + + SY
Sbjct: 289 CGEIRTPLIADFSLWEKSGHASKYAENMF-ATKSENRDFAIRPMNCPTCVQVYNTKLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R+E      G+MR R F   D + F    +  +     +   +   
Sbjct: 348 RDLPIRMAEFGIVHRNEPSGSLHGLMRVRSFTQDDGHIFCAPEQVEEEVILMVKQCFEV- 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++    P     + E                   D          D    
Sbjct: 407 YKDFGFNDFTVKIALRPENRIGNDE-----------------TWDKSEQMLKNALDANNV 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              ++    A Y    + H   L D++  + +     ++       G        AT+  
Sbjct: 450 AYELLPGEGAFYGPKIEFH---LKDAIGRSWQCGTIQLDFSMPDRLG--------ATYID 498

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G     V +    +G++     ++   + G   +W           + +        +
Sbjct: 499 KNGNKQVPVMLHRAIVGSLERFIGMLIEHYAGNMPLW------LTPVQVAVMGISNHQDE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C+K++  L K G     D   E+IG +     LL  P  VI+G        V ++    
Sbjct: 553 YCQKVFETLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKSEQEQEIVTVRKHNG 612

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                MS+ +   + + +    +
Sbjct: 613 EDLGQMSIGDFCAFLNEQIEAKK 635


>gi|66044647|ref|YP_234488.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. syringae B728a]
 gi|81308436|sp|Q4ZWM2|SYP_PSEU2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|63255354|gb|AAY36450.1| Prolyl-tRNA synthetase, bacterial [Pseudomonas syringae pv.
           syringae B728a]
          Length = 571

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 164/237 (69%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E  
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSD-GSDYAANIEKA 236



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYADLTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   + +
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGKVN 570


>gi|239993779|ref|ZP_04714303.1| threonyl-tRNA synthetase [Alteromonas macleodii ATCC 27126]
          Length = 638

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 150/447 (33%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L      + + G+  W   G      + + +R++
Sbjct: 227 KQLKSYLQRLEEAEKRDHRKIGKALNLF--HWQEEAPGMVFWHNDGWSIYTELESYVRKK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P +    LW +SG +D Y + M    +   +     P +      IF  
Sbjct: 285 LREYGYDEVKGPLMMDRSLWEKSGHWDKYAENMFT-TESEKREYAVKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +  +   +    
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQILEE-VSGCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G ++I ++  + P     + E    ++                  ++    
Sbjct: 403 MVYETYAAFGFENIKVKLSTRPEKRVGADEIWDKSE---------------AALADALKA 447

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +DI       E   A Y    +     L D L    +     ++       G+       
Sbjct: 448 NDIEFDYQPGEG--AFYGPKIEF---TLHDCLDRAWQCGTVQLDFSMPGRLGS------- 495

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+   DG+    V +    +G++     ++     G   +W        +++       
Sbjct: 496 -TYVAEDGERKVPVMIHRAILGSLERFIGILTEEFAGFFPLWLAPQQVVVMNIT------ 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +       +L ++G     D   E+IG +     L   P  ++VG K +   +V +
Sbjct: 549 DKQAEYASDCVKKLQELGFRAKSDLRNEKIGFKIREHTLKRIPYMLVVGDKEMEAGEVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       M LE+ I  A       
Sbjct: 609 RSRRGDDLGKMRLEDFIAMAQQEVVEK 635


>gi|30264646|ref|NP_847023.1| threonyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47530117|ref|YP_021466.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187467|ref|YP_030719.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|49481700|ref|YP_038622.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52140935|ref|YP_085897.1| threonyl-tRNA synthetase [Bacillus cereus E33L]
 gi|65321944|ref|ZP_00394903.1| COG0441: Threonyl-tRNA synthetase [Bacillus anthracis str. A2012]
 gi|165871455|ref|ZP_02216102.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167636725|ref|ZP_02395009.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167642081|ref|ZP_02400304.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170689721|ref|ZP_02880895.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170708708|ref|ZP_02899146.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177653139|ref|ZP_02935426.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|196042361|ref|ZP_03109631.1| threonine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|218905803|ref|YP_002453637.1| threonyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225866553|ref|YP_002751931.1| threonyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|227817360|ref|YP_002817369.1| threonyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|228917215|ref|ZP_04080772.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228929623|ref|ZP_04092641.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935883|ref|ZP_04098693.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948301|ref|ZP_04110584.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229093673|ref|ZP_04224773.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|229124142|ref|ZP_04253334.1| Threonyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|229186832|ref|ZP_04313987.1| Threonyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|229601552|ref|YP_002868855.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254686931|ref|ZP_05150789.1| threonyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254720893|ref|ZP_05182684.1| threonyl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|254736684|ref|ZP_05194390.1| threonyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741722|ref|ZP_05199409.1| threonyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254754681|ref|ZP_05206716.1| threonyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254757513|ref|ZP_05209540.1| threonyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|30259321|gb|AAP28509.1| threonine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47505265|gb|AAT33941.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181394|gb|AAT56770.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|49333256|gb|AAT63902.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974404|gb|AAU15954.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus cereus
           E33L]
 gi|164712752|gb|EDR18282.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167509956|gb|EDR85379.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167527843|gb|EDR90677.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170126388|gb|EDS95277.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170666324|gb|EDT17113.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172081663|gb|EDT66734.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|196026805|gb|EDX65442.1| threonine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|218536622|gb|ACK89020.1| threonyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225787158|gb|ACO27375.1| threonine--tRNA ligase [Bacillus cereus 03BB102]
 gi|227005330|gb|ACP15073.1| threonine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|228596569|gb|EEK54234.1| Threonyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|228659444|gb|EEL15092.1| Threonyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228689760|gb|EEL43567.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|228811288|gb|EEM57626.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228823651|gb|EEM69473.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830010|gb|EEM75629.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842416|gb|EEM87507.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229265960|gb|ACQ47597.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 645

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 169/434 (38%), Gaps = 32/434 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISL 245
             GL++   R                  D  +T+ + + D M            D++   
Sbjct: 416 DFGLENYSFRLS--------------YRDPEDTKKYYADDEMWEKAQGMLKEAMDEMGLD 461

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  +L +++ +S   ++    F    ++      ++ G 
Sbjct: 462 YYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELSYVGE 510

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DGK H   +     G +  +   +    +     +P  +AP ++ +I +    QV  D  
Sbjct: 511 DGKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSP--QVHLDYA 566

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++      
Sbjct: 567 KKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQK 626

Query: 426 REDMSLEEVINYAS 439
            E ++L+  ++   
Sbjct: 627 SETIALDAFVDMIK 640


>gi|239637520|ref|ZP_04678492.1| threonyl-tRNA synthetase [Staphylococcus warneri L37603]
 gi|239596738|gb|EEQ79263.1| threonyl-tRNA synthetase [Staphylococcus warneri L37603]
          Length = 645

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 153/445 (34%), Gaps = 33/445 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L          G+  WLP G      +   I +++  
Sbjct: 229 KAHLEMLEERKERDHRKIGKDLELFAN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++   M+  P +      I+ +  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMKLDETEEMVLRPMNCPHHMMIYNNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++     
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIQ 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDD 241
            ++   G +    R                  D  + + +   D   +          D+
Sbjct: 408 DVYKDFGFEDYRFRLS--------------YRDPEDKEKYFDDDEMWNKAENMIKEAADE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  ++ + + +S   ++    F    ++      T
Sbjct: 454 LGLSYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERF----ELT 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G DG+ H   +   G+ +         +           +    +I  +N+  H    
Sbjct: 503 YIGQDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVEIIPVNLDLH---- 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + I   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++  
Sbjct: 559 YDYAKSIQDELKSQGVRVEIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNEVNVRKY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +  +E +  +E I          +
Sbjct: 619 GSQDQETLEKDEFIWNLVDEIRLKK 643


>gi|145588388|ref|YP_001154985.1| prolyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|189083506|sp|A4SVA7|SYP_POLSQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145046794|gb|ABP33421.1| prolyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 580

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ FL  L+E P DAE+ SHKLM+R G+I + S GIY++LPLG K +  V  IIREE
Sbjct: 1   MKASQSFLATLKEAPSDAEVVSHKLMVRAGLIRKISAGIYNYLPLGLKVIRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW E+GR++  G E+LR+ DR+D+  +  PT EEV+TD+ R+
Sbjct: 61  MNRAGAIELLMPMIQPAELWQETGRWEKMGPELLRIKDRHDRDFLIQPTSEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY  MF +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFSMKDAYSFDRDTEGLKKSYQTMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL+   + A++G IGG  S EF V+ADTGE  +       D+    E
Sbjct: 181 YTQIFKRMGLEFRAVTADNGAIGGSGSQEFHVIADTGEDAIVYC-PSSDYAANLE 234



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/195 (34%), Positives = 105/195 (53%), Gaps = 3/195 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N  + D  P+ K V    RGIEVGH+F  GT+YS  M  T+    GK   +
Sbjct: 382 PEPLVLDIRNAVIGDPSPDGKGVVDICRGIEVGHVFQLGTRYSEAMGCTYLDQQGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE  HD +GIIWP S+AP ++ +  +     +  + AC++++  
Sbjct: 442 VMGCYGIGVTRLLGAAIEQGHDERGIIWPISMAPVEVVICPMGYEKSEPVKAACDQLHDE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G+ FA  +L+G P +V++G + ++DS+VE K R     +++ L
Sbjct: 502 LVAAGIDVILDDRNERPGAMFADWELIGAPFRVVIGDRGLADSQVEFKGRTDADSQNIPL 561

Query: 432 EEVINYASHRFSNNR 446
            ++           +
Sbjct: 562 AQIKEKVISAVQAAK 576


>gi|237807601|ref|YP_002892041.1| prolyl-tRNA synthetase [Tolumonas auensis DSM 9187]
 gi|259511628|sp|C4LBX6|SYP_TOLAT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|237499862|gb|ACQ92455.1| prolyl-tRNA synthetase [Tolumonas auensis DSM 9187]
          Length = 574

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 122/235 (51%), Positives = 160/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V AI+REE
Sbjct: 1   MRTSQYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLHKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+S+P +Q A+LW ESGR++ YG E+ RL DR+++  + GPTHEEV+T + R 
Sbjct: 61  MNKAGAIEVSMPVVQPAELWQESGRWEQYGPELCRLTDRHNRPFVLGPTHEEVVTALVRY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REF MKDAYSF +  E    +Y KM  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFTMKDAYSFHMNKESLIETYGKMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R+GL   P+ A++G IGG  SHEF VLA++GE  +       D+    E
Sbjct: 181 YCNIFSRMGLDFRPVLADTGSIGGTGSHEFHVLANSGEDLIAF-STESDYAANVE 234



 Score =  186 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 68/190 (35%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 258 ATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D     +   +  RGIEVGHIF  GTKYS  M+AT     GK   ++MG
Sbjct: 385 EVADIRNVVEGDPSPCGKGTLLLKRGIEVGHIFQLGTKYSEAMNATVLNEAGKATVMEMG 444

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GIIW DS+APF++ +I +     +  ++  E+ Y  L  
Sbjct: 445 CYGIGVTRVVAAAIEQNFDDRGIIWTDSIAPFQVVIIPMNMHKSERVQELAERFYNELQA 504

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  VE K+R +G + +++++E+
Sbjct: 505 AGVEVLLDDRKERPGVMFADMELIGIPHSIVIGDRSIDNGVVEYKYRRSGDKTEVAIDEI 564

Query: 435 INYASHRFSN 444
           I     + + 
Sbjct: 565 IAKIKAQLNK 574


>gi|217979642|ref|YP_002363789.1| threonyl-tRNA synthetase [Methylocella silvestris BL2]
 gi|217505018|gb|ACK52427.1| threonyl-tRNA synthetase [Methylocella silvestris BL2]
          Length = 648

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/438 (18%), Positives = 142/438 (32%), Gaps = 36/438 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      ++ L      +   G   W P G      + A +R      G
Sbjct: 232 YLRQIEEAEKRDHRRLGREMDLF--HFQEEGPGAIFWHPKGWTLFQTLIAYMRRRMEADG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E++ P +    LW  SG + ++ + M      +++     P +      IF++ +KSY
Sbjct: 290 YLEVNTPQVLDRALWETSGHWQTFREHMFLTKTEDERIFALKPMNCPGHVQIFKNGLKSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R E      GVMR R F   DA+ F    +    S        L I
Sbjct: 350 RDLPLKIGEFGVVHRYEPSGALHGVMRVRAFTQDDAHIFCTEDQIMAESLKVN-DLILSI 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++  + P     S E    A+    +V               T  +    
Sbjct: 409 YQDFGFDDVIIKLSTRPEKRVGSEEAWDKAEAALGRVVDM-----LAAGGAKTGVN---- 459

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D++    +     ++      FG        A +  
Sbjct: 460 -----PGEGAFYGPKLEY---TLRDAIGREWQCGTTQVDFNMPGRFG--------AFYID 503

Query: 305 -ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               K   V +     G++     ++     G   +W   V     ++       Q   D
Sbjct: 504 ADSDKKTPVMIHRAIFGSLERFTGILIEHFSGNLPLWLAPVQVIVATIT------QDADD 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A   K G  V  D   E+I  +     L   P+ ++VG +   +  V I+    
Sbjct: 558 YALEVAAAARKYGLRVEADLRNEKISYKIREHSLAKTPVLIVVGKREGLERTVSIRRLGA 617

Query: 424 GIREDMSLEEVINYASHR 441
                +SLE  +   +  
Sbjct: 618 SDTTSLSLETALERLADE 635


>gi|228999356|ref|ZP_04158935.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|229006911|ref|ZP_04164541.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228754311|gb|EEM03726.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228760301|gb|EEM09268.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock3-17]
          Length = 643

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 168/434 (38%), Gaps = 32/434 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 235 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 294 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 413

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDFDDIISL 245
             GL++   R                  D  +T+ +    +  +          D++   
Sbjct: 414 DFGLENYSFRLS--------------YRDPEDTKKYYADDEMWEKAQSMLKEAMDEMGLE 459

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+ G 
Sbjct: 460 YYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELTYVGE 508

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DGK H   +     G +  +   +    +     +P  +AP ++ +I +    QV  D  
Sbjct: 509 DGKPHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSP--QVHLDYA 564

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++      
Sbjct: 565 KKVQEDLQRAGIRVEVDTREEKIGYKIREAQMQKIPYMLVVGDNEVAENGVNVRKYGEQK 624

Query: 426 REDMSLEEVINYAS 439
            E ++L+  ++   
Sbjct: 625 SETIALDAFVDMIK 638


>gi|242278821|ref|YP_002990950.1| threonyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
 gi|259516380|sp|C6BRH1|SYT_DESAD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|242121715|gb|ACS79411.1| threonyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
          Length = 642

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 155/444 (34%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             K+   I +   RD      +L L +    +   G+  W P G      +    R+E  
Sbjct: 225 LKKHLAQIEEAKKRDHRKLGTQLDLFSVNP-EVGAGMTIWHPKGALIRAILEDFERKEHL 283

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +   +LW +SG YD+Y + M    + ++++    P +      +F+S +
Sbjct: 284 KRGYQFVQGPLILKRELWEKSGHYDNYRENM-YFTEIDEQSYGIKPMNCLSHMLVFKSRL 342

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  +++  +  R E      G++R R F   DA+      +             
Sbjct: 343 RSYRDLPQRYFEHGVVHRHEKSGVLHGLLRVRTFTQDDAHLICRPDQLRDEIIGVAKFV- 401

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                             G + G    E+     T   +   S +  D    +      +
Sbjct: 402 ------------------GDVMGLFGFEYEAEVSTKPEKAIGSDEDWDRATEALEGALKE 443

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +    SI E   A Y    D+    + D+L    + +    +    F    ++      +
Sbjct: 444 MGMEYSINEGDGAFYGPKIDII---IKDALERRWQCATIQCD----FTLPERFD----LS 492

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H    +    +G++     V+     G    W   V    +++         
Sbjct: 493 YVGEDGERHRPVMLHRVILGSIERFIGVLLEHTGGALPAWLSPVQAKILTVT------DS 546

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +K+   L + G     DD  E++G +   A L   P  +++G K V+   V ++ 
Sbjct: 547 QNEFAQKVLQFLREKGIRAEVDDRNEKLGYKVREAQLEKIPYMLVIGDKEVAAESVNVRA 606

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R        SLEE     S     
Sbjct: 607 RDGEDPGLKSLEEAAELISTAIDE 630


>gi|94499191|ref|ZP_01305729.1| threonyl-tRNA synthetase [Oceanobacter sp. RED65]
 gi|94428823|gb|EAT13795.1| threonyl-tRNA synthetase [Oceanobacter sp. RED65]
          Length = 638

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 154/447 (34%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD       L L      + + G+  W   G    + +   +R++
Sbjct: 227 KALKAYLQRLEEAEKRDHRKLGKALDLF--HWQEEAPGMVFWHSKGWTIYNILEDYMRKK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    +W +SG +D Y ++ +   +   +     P +      IF  
Sbjct: 285 LVEYQYEEVRAPMVMDVSMWEKSGHWDKY-QDNIFATESEKRTYAVKPMNCPGHLQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP+   +  +  R+E      G+MR R F   DA+ F    +  +     + +
Sbjct: 344 GLKSYRDLPYRMAEFGIVHRNEPSGSLHGLMRVRSFTQDDAHVFCTEEQILEEVTKCIQM 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +         +++ ++  + P     S E    A+ G                      
Sbjct: 404 VFDVYKDFGFDQNLSVKLSTRPEKRIGSDEIWDKAEKGLADAL----------------- 446

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   I E   A Y    +     LFD L    +     ++       G        
Sbjct: 447 KANELDYEIQEGEGAFYGPKIEF---TLFDCLDRAWQCGTIQLDFSMPGRLG-------- 495

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   +G       +    +G++     ++   + G    W   +AP +  ++NI  + 
Sbjct: 496 AQYVDENGDRQTPVMIHRAILGSLERFIGILIEHYAGALPTW---LAPTQAMIMNITDN- 551

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  +K+   L+K G  V  D   E+IG +     L   P  ++ G K V+   V +
Sbjct: 552 --QADYVKKVQQTLAKQGFRVDSDLRNEKIGFKIREHTLQKVPYLLVTGDKEVASDAVAV 609

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       MSLE+          N 
Sbjct: 610 RTRSGEDLGTMSLEDFAKLLESENQNR 636


>gi|154253109|ref|YP_001413933.1| threonyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
 gi|189083615|sp|A7HWJ3|SYT_PARL1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|154157059|gb|ABS64276.1| threonyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
          Length = 652

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 155/453 (34%), Gaps = 53/453 (11%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +++E  R D      ++ L    + + ++G   W P G +    +   +R   + 
Sbjct: 230 KAYLTMVEEAERRDHRKIGREMDLF--HLQEEAQGSVFWHPKGWRIWQALEQYVRRRIDA 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-------------MIYGPTH 110
            G +E+  P L  +  W +SG +  Y + M  + D                  M   P +
Sbjct: 288 AGYVEVRTPQLLDSKFWEQSGHWGKYRENMFVVPDEVPSTDEDAPVLSGKAKLMAIKPMN 347

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
                 IF+  +KSYR+LP    +     R+E      G+MR R+    DA+ F  T + 
Sbjct: 348 CPAHIQIFKQGVKSYRDLPLRMAEFGCCHRNEPHGALHGLMRVRQMTQDDAHIFC-TEDQ 406

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
            K            ++  +G     +R  + P     + E                   D
Sbjct: 407 IKEETEAFVALLESVYEDMGFTGTKLRLATRPDVRAGTDE-----------------TWD 449

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
               +       +           A Y    + H   L D++  + ++    ++    F 
Sbjct: 450 KAEKALEEALKALGKEFDFAPGEGAFYGPKLEFH---LRDAIGRSWQLGTLQLD----FV 502

Query: 290 FGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              +    + A++ G DG  H    +    +G++     ++  +++G+  +W   V    
Sbjct: 503 LPER----LDASYIGEDGNKHRPVMLHRAILGSLERFIGILIENYEGRFPMWLAPVQAVV 558

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            ++              E++  +L   G     D   E+I  +     +   P   + G 
Sbjct: 559 TTIT------SDADPYAEEMLQKLRDAGIRAELDLRNEKINYKVREHSVAKVPAIFVAGK 612

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +   +  V I+   +  ++ M L+E I   +  
Sbjct: 613 REAEEGTVSIRRLGSQQQQTMKLDEAIKALAEE 645


>gi|293394735|ref|ZP_06639027.1| proline-tRNA ligase [Serratia odorifera DSM 4582]
 gi|291422861|gb|EFE96098.1| proline-tRNA ligase [Serratia odorifera DSM 4582]
          Length = 572

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   AIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNANAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKD+YSF  T E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDSYSFHTTQESLQATYDAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL   P++A++G IGG  SHEF VLA +GE  +       D+    E
Sbjct: 181 YSKIFSRMGLDFRPVQADTGSIGGSASHEFQVLAASGEDDIVF-STGSDYAANIE 234



 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/192 (38%), Positives = 113/192 (58%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ +   +  RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 380 PLPQVADIRNVVEGDASPDGQGTLLIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQLL 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF ++++ +  H     ++  EK+YA 
Sbjct: 440 NMGCYGIGVTRVVAAAIEQNHDDRGIIWPDAIAPFHVAILPMNMHKSFRVQELAEKLYAE 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G ++ +  
Sbjct: 500 LRSHGIDVILDDRKERPGVMFADMELIGVPHSIVIGDRNLDSDEIEYKNRRVGEKQMIKT 559

Query: 432 EEVINYASHRFS 443
            +++ Y   +  
Sbjct: 560 GDIVEYLLAQIQ 571


>gi|289628621|ref|ZP_06461575.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289651507|ref|ZP_06482850.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330868600|gb|EGH03309.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 571

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 117/237 (49%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E  
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSD-GSDYAANIEKA 236



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   + +
Sbjct: 544 EYKSRTESQPQAIAVSDVLSFIQGKVN 570


>gi|71736091|ref|YP_275923.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|257487021|ref|ZP_05641062.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|298488219|ref|ZP_07006255.1| Prolyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|114152230|sp|Q48FB4|SYP_PSE14 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71556644|gb|AAZ35855.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|298157277|gb|EFH98361.1| Prolyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|320323063|gb|EFW79152.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320329665|gb|EFW85654.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330892229|gb|EGH24890.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. mori str. 301020]
 gi|330988958|gb|EGH87061.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331009335|gb|EGH89391.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 571

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 117/237 (49%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E  
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSD-GSDYAANIEKA 236



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   + +
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGKVN 570


>gi|222055493|ref|YP_002537855.1| prolyl-tRNA synthetase [Geobacter sp. FRC-32]
 gi|254782902|sp|B9LZK1|SYP_GEOSF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|221564782|gb|ACM20754.1| prolyl-tRNA synthetase [Geobacter sp. FRC-32]
          Length = 570

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 127/251 (50%), Positives = 171/251 (68%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P ++E P DAE+ SH+LMLR GMI + + G+Y++LPLG +++  V  I+REE
Sbjct: 1   MRYSQYFIPTVKETPSDAEVISHQLMLRGGMIRKLAAGVYNYLPLGLRSIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +PT+Q A+LW ESGR++ YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIELLMPTVQPAELWQESGRWEQYGKELLRFRDRKDTEFCLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+  + +  SY+KM+ +
Sbjct: 121 EVKSYRQLPINLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDVDEKAADISYDKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK   + A++G IGG  SHEF+VLA++GE  +       D+    E  +  
Sbjct: 181 YRRIFERCGLKFRAVEADTGSIGGSWSHEFMVLAESGEDAIVSCTAC-DYAANVEKAEAR 239

Query: 241 DIISLNSIVEQ 251
                     +
Sbjct: 240 QSAVTEHADPR 250



 Score =  189 bits (480), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 78/187 (41%), Positives = 111/187 (59%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           +D+ N  L D  P  +       RGIEVGH+F  GTKYS  M AT+  ADGK+  + MG 
Sbjct: 380 ADIRNVVLGDPCPRCESGTLEMWRGIEVGHVFKLGTKYSKAMKATYLDADGKEQIIFMGC 439

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R VAA IE +HD  GII+P  +APF   +  +   + V R+A E IY +L+  G
Sbjct: 440 YGIGIGRTVAACIEQNHDENGIIFPLPIAPFHCIISALNMKEDVVREASEAIYGQLAAAG 499

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G +F  ADL+G P++++VGSK ++D KVE+K R +G  E +S+ + + 
Sbjct: 500 IEVLLDDRDERPGFKFKDADLIGIPMRIVVGSKNLADGKVELKCRRSGEVELLSIADAVE 559

Query: 437 YASHRFS 443
                 +
Sbjct: 560 KVKAAVN 566


>gi|317047006|ref|YP_004114654.1| prolyl-tRNA synthetase [Pantoea sp. At-9b]
 gi|316948623|gb|ADU68098.1| prolyl-tRNA synthetase [Pantoea sp. At-9b]
          Length = 572

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 126/277 (45%), Positives = 176/277 (63%), Gaps = 5/277 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPSDAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR+ DR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWEESGRWEQYGPELLRIKDRHERPFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN---- 236
           Y + F R+GL    ++A++G IGG  SHEF VLA +GE  V       D+    E     
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIF-SSESDYAANIEKAEAL 239

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               +       + Q+  P+A T     E+    + +
Sbjct: 240 APAGERPQPTQAMVQFDTPHAKTIAELVEQHQLPIEK 276



 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 68/193 (35%), Positives = 111/193 (57%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  + A  +G DG++  +
Sbjct: 380 PEPRVEDIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSDALKAAVQGEDGRNQIM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWP ++APF+++++ +  H     ++  +++Y  
Sbjct: 440 TMGCYGIGITRVVAAAIEQNHDERGIIWPAALAPFEVAILPMNMHKSFRVKEVADELYNA 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + + ++++E K R    +E +  
Sbjct: 500 LRAKGIDVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNAEIEYKARSASEKEMIKH 559

Query: 432 EEVINYASHRFSN 444
            E++++ +   + 
Sbjct: 560 SEIVDFLAKALNK 572


>gi|325982765|ref|YP_004295167.1| prolyl-tRNA synthetase [Nitrosomonas sp. AL212]
 gi|325532284|gb|ADZ27005.1| prolyl-tRNA synthetase [Nitrosomonas sp. AL212]
          Length = 569

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 119/235 (50%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P +AE+ SHKLMLR G+I +   G+Y+W+PLG + L  +  IIREE
Sbjct: 1   MRVSQFFVSTLKEAPAEAELISHKLMLRAGLIKRLGSGLYTWMPLGLRVLRKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GA+E+ +P +Q A+LW E+GR+D +G +ML++ DR+     +GPTHEE++TD  R 
Sbjct: 61  MNSSGAVEILMPAIQPAELWQETGRWDVFGLQMLKIKDRHKHDFCFGPTHEEIITDTVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +    +Y  M+ +
Sbjct: 121 EIKSYRQLPLNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHTNEDSLMQTYQLMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL+   + A++G IGG  SHEF VLAD+GE  +    D  D+    E
Sbjct: 181 YSRIFTRIGLQFRAVSADTGAIGGSGSHEFHVLADSGEDAIAFCPD-SDYAANIE 234



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 66/185 (35%), Positives = 104/185 (56%), Gaps = 3/185 (1%)

Query: 261 DVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D+ P+ K +    RGIEVGHIF   TKYS  M ATF    G   Y++MG YG
Sbjct: 382 DIRNVVPGDASPDGKGILEICRGIEVGHIFQLRTKYSKIMKATFLDESGSTQYMEMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGC 377
           IG  R+VAA IE +HD  GII+P ++APF++++I I    +   ++  EK+Y +      
Sbjct: 442 IGVSRIVAAAIEQNHDEYGIIFPAAIAPFQLAIIPIGLQKNPQVKEIVEKLYQQFLDAHI 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G  FA  +L+G P ++++G + +  S +E + R     E + ++E+  +
Sbjct: 502 EVLLDDRDERPGVMFADMELMGIPHRIVIGERGLKQSTIEYQGRKDRSPEAIFIDEIFPF 561

Query: 438 ASHRF 442
              + 
Sbjct: 562 IFTKL 566


>gi|75764566|ref|ZP_00744025.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74487945|gb|EAO51702.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 445

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 153/443 (34%), Gaps = 40/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 39  EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEY 96

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 97  NYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 155

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TP+  +     +      
Sbjct: 156 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPKQIEDEIKSVMAQIDY 214

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 215 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 256

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 257 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 305

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             +        +    +G++    A++     G    W        + +  +   + V  
Sbjct: 306 DENNDKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVVPVSNAVHE 360

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             C ++  +L++ G  V  D   E++G +   A +   P  +++G K +    V ++   
Sbjct: 361 QYCSEVAHKLAQAGVRVEQDARDEKLGYKIREAQMQKVPYFLVIGDKEMESGAVNVRKYG 420

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
               E ++L+  +        N 
Sbjct: 421 EEKSEVVALDVFVARIEEEIKNR 443


>gi|313673284|ref|YP_004051395.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940040|gb|ADR19232.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 640

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/440 (18%), Positives = 154/440 (35%), Gaps = 41/440 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L  G   +   G+  W+P G K    +    R E  + 
Sbjct: 228 EYLNRLEEAKKRDHRRLGKELELF-GTFDEIGSGLICWMPKGAKVRATIEEFWRREHFKN 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +  ++LW  SG  D Y + M    D   +     P +      I++S  +S
Sbjct: 287 GYDLLYTPHIGKSNLWQTSGHLDFYSENMYSPMDIEGQNYYIKPMNCPFHIMIYKSKNRS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + ++   +R E      G++R R F   DA+      +  +    ++    L 
Sbjct: 347 YRDLPLRWAELGTVYRYERSGVLHGLLRVRGFTQDDAHIICAQDQIVEE-IEEVLKFSLD 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I+   G  SI     + P                                S         
Sbjct: 406 IWKTFGFTSIKGYIATRPEKS-----------------VGDDSMWKAATDSLMESIKKSG 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D+   K+ D++    +++    +    F    ++ +     + 
Sbjct: 449 IEYEIDEGGGAFYGPKIDL---KVKDAIGREWQMTTIQFD----FNLPERFDMV----YV 497

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG +     +    +G++     V+   + G    W   V    +++           
Sbjct: 498 DRDGKEKRPYMVHRALLGSLERFFGVLIEHYAGAFPFWLAPVQIKIMNI------SDEQA 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D CE++Y RL   G  V  D   E+IG +   A L   P  +++G++    + V ++ R 
Sbjct: 552 DYCEQLYRRLKAEGFRVEMDLRNEKIGYKIREAQLFKVPHMIVIGNQEKEKNHVSVRLRN 611

Query: 423 TGIREDMSLEE---VINYAS 439
              + ++   E   VI+  +
Sbjct: 612 GETKNNLDFSEYFGVIDELN 631


>gi|294782476|ref|ZP_06747802.1| threonine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294481117|gb|EFG28892.1| threonine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 637

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 165/443 (37%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  K+   + +   RD      +L L    I ++  G   +LP G    + +  + R+E 
Sbjct: 226 RLKKHLKFMEEAEKRDHRKLGKELELF--FISEYGPGFPFFLPKGMVFRNVLIDLWRKEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G +++  P + + +LW  SG + +Y + M   ++ ++      P +       F+  
Sbjct: 284 EKAGYLQLETPIMLNKELWEISGHWFNYRENMYT-SEIDELEFAIKPMNCPGGVLSFKHQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     +   
Sbjct: 343 LHSYKDLPARLAELGKVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + + +L      +   + P     S E                   D    +     D
Sbjct: 402 IDKFYSKLFGFEYEIELSTKPEKAIGSQE-----------------IWDMAESALAGALD 444

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     I     A Y    D    K+ D++    +     ++    F    ++      
Sbjct: 445 KLGRKYKINPGDGAFYGPKLDF---KIKDAIGRMWQCGTIQLD----FNLPERFD----V 493

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G DG+ H    +     G++     ++   + G   +W   V    ++L      + 
Sbjct: 494 TYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMWLAPVQVKVLTL------ND 547

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEI 418
            C    ++I A+L ++G     DD  E IG +   A+     P+Q+I+G   V + +V I
Sbjct: 548 ECIPYAKEIMAKLQELGIRAELDDRNETIGYKIREANGRYKIPMQLIIGKNEVENKEVNI 607

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  +   SL++   Y    
Sbjct: 608 RRFGSKDQFPKSLDDFYEYVVDE 630


>gi|290969075|ref|ZP_06560610.1| threonine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781031|gb|EFD93624.1| threonine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 635

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/436 (19%), Positives = 148/436 (33%), Gaps = 39/436 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +   H+   G   +   G    +++    RE        E+  
Sbjct: 237 EAEKRDHRKLGKQLDLFS--FHEEGPGFPFFHAKGMVLRNSLLKFWRELHAEADYDEIMT 294

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           PT+ +  LW +SG +D Y   M      +++     P +      +++S + SYR+ P  
Sbjct: 295 PTILNRQLWEQSGHWDHYRDNM-YFTTIDEQPYAIKPMNCPGGILVYKSSVHSYRDFPIR 353

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             ++ L  R EL     G+ R R F   DA+ F L P   K   + +   + + + + GL
Sbjct: 354 AAELGLVHRHELHGALHGLFRVRCFTQDDAHIFML-PSQMKDEISGVMDLFDKAYKQFGL 412

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                             E+ V   T       S +  +    + +   ++      I E
Sbjct: 413 ------------------EYHVELSTRPEDSMGSDEIWESATKTLHEVIEEKQVPYVINE 454

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D H           K    R  + G I             T+ G DG+ H
Sbjct: 455 GDGAFYGPKLDFHL----------KDCLGRTWQCGTI-QLDMLMPERFDVTYIGEDGQKH 503

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              M          +   +    +     +P  +AP +I  + I           E    
Sbjct: 504 RPVMVHRAC--FGSIERFLGIITENYAGAFPVWLAPVQIKFLPISDK---QLAYAEDTAR 558

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           R  K G  V  D   E+IG +   A +   P   IVG K ++   + ++ R  G     +
Sbjct: 559 RFKKAGLRVEVDTSSEKIGYKIRKAQMEKVPYMAIVGDKEMAAGTISVRERTQGDIGVKA 618

Query: 431 LEEVINYASHRFSNNR 446
            EEV++       + +
Sbjct: 619 AEEVLHMIKQLADSRQ 634


>gi|118479724|ref|YP_896875.1| threonyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|118418949|gb|ABK87368.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 646

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 169/434 (38%), Gaps = 32/434 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 238 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 296

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 297 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 356

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 357 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 416

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISL 245
             GL++   R                  D  +T+ + + D M            D++   
Sbjct: 417 DFGLENYSFRLS--------------YRDPEDTKKYYADDEMWEKAQGMLKEAMDEMGLD 462

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  +L +++ +S   ++    F    ++      ++ G 
Sbjct: 463 YYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELSYVGE 511

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DGK H   +     G +  +   +    +     +P  +AP ++ +I +    QV  D  
Sbjct: 512 DGKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSP--QVHLDYA 567

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++      
Sbjct: 568 KKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQK 627

Query: 426 REDMSLEEVINYAS 439
            E ++L+  ++   
Sbjct: 628 SETIALDAFVDMIK 641


>gi|77457424|ref|YP_346929.1| prolyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
 gi|114152233|sp|Q3KH16|SYP_PSEPF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|77381427|gb|ABA72940.1| proline tRNA synthetase [Pseudomonas fluorescens Pf0-1]
          Length = 571

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 113/237 (47%), Positives = 161/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G++E+ +P+ Q A+LW ESGR++ YG E+LR+ DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGSLEVLMPSTQPAELWQESGRWEEYGPELLRIKDRHGRDFCAGPTHEEVITDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD+YSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFIMKDSYSFHADQASLQVTYDRMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +    +  D+    E  
Sbjct: 181 YCNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVF-SNGSDYAANIEKA 236



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 114/207 (55%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGNKYSKAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   ++MG YGIG  RVVAA IE ++D  GIIW D++APF+I+L+ ++   
Sbjct: 424 KCEVLGENGKPVTLEMGCYGIGVSRVVAAAIEQNNDENGIIWSDALAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           ++ R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 ELVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R  G  + + + +V+++   R  
Sbjct: 544 EYKSRTEGQAQALPVADVLSFLQARIR 570


>gi|46579756|ref|YP_010564.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough]
 gi|81830448|sp|Q72CD8|SYP_DESVH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|46449171|gb|AAS95823.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233547|gb|ADP86401.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris RCH1]
          Length = 574

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 127/237 (53%), Positives = 167/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P L+E P DAE+ SHKL++R GMI + + GIY+++P+G +AL+ V AI+REE
Sbjct: 1   MRWSRCYIPTLKEAPSDAEVVSHKLLVRAGMIRKLTSGIYTFMPMGLRALNKVAAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q ADLW E+GR++ YGKE+LR  DRND+    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQEVLMPMVQPADLWQETGRWEFYGKELLRFRDRNDRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G   SY  M+ +
Sbjct: 121 EVRSYRQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDRDQSGCDESYKAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF RLGL+   + A+SG IGG  SHEF+VLADTGE  +       ++    E  
Sbjct: 181 YQRIFSRLGLRFRAVEADSGSIGGSFSHEFMVLADTGEDTLAVCTAC-EYAANVERA 236



 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 2/190 (1%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A   A +D+      D  P         +GIEVGH+F  G KYS  M+ATF   +GK+ 
Sbjct: 374 DAAIEAYADLRMITASDPCPRCGGAVELPKGIEVGHVFKLGLKYSKSMNATFLDENGKEQ 433

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MG YGIG  RVVA+ IE ++DG GI++P  +AP++++L+ +   ++       +I +
Sbjct: 434 VMVMGCYGIGVSRVVASCIEQNNDGDGIVFPPPIAPYEVALLLLDPKNEEAAAKAAEIES 493

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G DV  DD  E+ G +F  ADL+G P Q+++G K ++   VE K+R +G + ++ 
Sbjct: 494 FLEAEGHDVLLDDRDERPGVKFKDADLIGSPYQLVLGGKGLARGVVEAKNRRSGEKTELP 553

Query: 431 LEEVINYASH 440
           +E        
Sbjct: 554 VEGFAEAFRD 563


>gi|269137906|ref|YP_003294606.1| prolyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|267983566|gb|ACY83395.1| prolyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|304557958|gb|ADM40622.1| Prolyl-tRNA synthetase [Edwardsiella tarda FL6-60]
          Length = 572

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 127/235 (54%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLNKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNYAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T    + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQASLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +       D+    E
Sbjct: 181 YGRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF-STASDYAANIE 234



 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/187 (37%), Positives = 117/187 (62%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K   +  RGIEVGHIF  GTKY+  ++AT +G DG++  + MG Y
Sbjct: 385 ADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYTEALNATVQGEDGRNQLMTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           GIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     ++  E++Y  L   G
Sbjct: 445 GIGVTRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHKSFRVKEVAERLYDELRAKG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  V++G + + ++++E K+R +G +  +S++E+  
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGIPHTVVIGDRNLDNNEIEYKYRRSGEKLMISVDEIAA 564

Query: 437 YASHRFS 443
           +   + +
Sbjct: 565 FLQAQIA 571


>gi|169828188|ref|YP_001698346.1| threonyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|168992676|gb|ACA40216.1| Threonyl-tRNA synthetase 2 [Lysinibacillus sphaericus C3-41]
          Length = 637

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 150/444 (33%), Gaps = 43/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           KYF+ + +   R+      +L L   M  + + G+  +L  GQ   + + + +R  Q + 
Sbjct: 232 KYFVFLEEAEKRNHRKLGKELSLF--MFSEEAPGMPFYLANGQILRNELESYLRNLQAKY 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + +  LW +SG +D Y   M      ++++    P +      IF++++ S
Sbjct: 290 DYQEVRTPLMMNQRLWEQSGHWDHYKDNM-YFTQVDNQSFALKPMNCPGHMLIFKNNLHS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R E      G++R R F   DA+ F  TP+  +            
Sbjct: 349 YRDLPIRMAEFGQVHRHEFSGALNGLLRVRSFCQDDAHIF-ATPQQIEDEIALALNIIDE 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G +                    V   T            D    +      ++ 
Sbjct: 408 VYDVFGFQYT------------------VELSTRPDDYMGELALWDQAEEALENVLLNLG 449

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +I E   A Y    D+H   + D++  + + +   ++    F    K+      T+ 
Sbjct: 450 IDYTINEGDGAFYGPKIDIH---IKDAIQRSHQCATVQLD----FQLPEKFD----LTYI 498

Query: 304 GADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               +     +    +     R +  +IE       I                       
Sbjct: 499 NEHNEKVRPIVIHRAVFGSIDRFLGILIEHFGGAFPIWLAPQQVQVIAVA-------DAH 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +D   ++   L      V  DD  E++G +   A L   P  +++G +  ++  V ++  
Sbjct: 552 QDYAIQVVKALQHEQIRVQIDDRQEKLGKKIREAQLHKIPYIIVIGDRETANQNVSVRRH 611

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                 + ++ +++   +      
Sbjct: 612 GQQASVEYTVSQLMKEITEAIKQK 635


>gi|254282289|ref|ZP_04957257.1| threonyl-tRNA synthetase [gamma proteobacterium NOR51-B]
 gi|219678492|gb|EED34841.1| threonyl-tRNA synthetase [gamma proteobacterium NOR51-B]
          Length = 643

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 142/437 (32%), Gaps = 40/437 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD    + KL L    + + + G+  W P G      +   +RE+Q   G
Sbjct: 231 YLNRIAEAEKRDHRKIAKKLGLF--HLQEEAPGMVFWHPAGWVIYQTIERYMREQQLAYG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG  D +   M  L   +++     P +      +F   +KSY
Sbjct: 289 YEEIKTPQLVDYSLWQRSGHADKFADGMFMLK-SDERDFAVKPMNCPCHIQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F    +               +
Sbjct: 348 RDLPLRLAEFGSCHRNEPSGSLHGIMRVRGFVQDDAHIFCTEDQIQGE-VGDFIDMLHDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   +  R  + P                      S    D    +     D    
Sbjct: 407 YADFGFSEVIYRLSTRPEQR-----------------VGSDADWDRAEAALAKALDAKSL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    +     L D +    ++    ++                A +  
Sbjct: 450 PWEELPGEGAFYGPKIEF---SLKDCIGRVWQLGTIQVDFSMPGRLD--------AQYVA 498

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG     V +    +G+      ++    +G+   W   ++P +  ++NI        D
Sbjct: 499 EDGSRKVPVMLHRAVLGSFERFIGILIEHFEGEFPTW---LSPQQAVIVNITDKHA---D 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L   G     D   E+IG +    ++   P  ++VG + V  + V ++ R  
Sbjct: 553 YALSVQETLKNNGFRAVCDLRNEKIGFKIRELEMKKTPYIIVVGDQEVESATVSVRARHG 612

Query: 424 GIREDMSLEEVINYASH 440
                M L+ ++   + 
Sbjct: 613 RDLGSMDLDSLVTTLTD 629


>gi|113460987|ref|YP_719054.1| threonyl-tRNA synthetase [Haemophilus somnus 129PT]
 gi|123031343|sp|Q0I3M2|SYT_HAES1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|112823030|gb|ABI25119.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Haemophilus
           somnus 129PT]
          Length = 642

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 136/442 (30%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLHRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  +G + +Y  +++      ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWERTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +            I
Sbjct: 349 RDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMVYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P                           D               
Sbjct: 408 YSTFGFTDIFVKLSTRPEKR-----------------IGEDVMWDRAEQGLANALKHNGL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    +     L D L    +     ++                AT+  
Sbjct: 451 EYEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTIQLDFALPGRLD--------ATYVA 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G++     +I   + G    W   +    +++           D
Sbjct: 500 EDNARRTPVMIHRAILGSIERFIGIITEEYAGFFPTWLAPIQAVVMNIT------DSQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+  + S+ G  V  D   E++G +     L   P  ++ G K + ++K+ ++ R  
Sbjct: 554 YVQKVVKQFSEAGLRVKADIRNEKVGFKIREHTLRRVPYMLVCGDKEIVENKIAVRTRKG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                 S+EE +     +    
Sbjct: 614 TDLGTFSVEEFVEILKQQVRKR 635


>gi|74317025|ref|YP_314765.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Thiobacillus
           denitrificans ATCC 25259]
 gi|123731846|sp|Q3SK34|SYT_THIDA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|74056520|gb|AAZ96960.1| threonyl-tRNA synthetase, class IIa [Thiobacillus denitrificans
           ATCC 25259]
          Length = 637

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 145/445 (32%), Gaps = 41/445 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E   RD    + +L L    +   + G+  W P G      +   +RE+   
Sbjct: 231 EAYLHRLEEAEKRDHRRLAKQLDL--LHMQDEAPGMVFWHPKGWIVWQQIEQYMREKFVE 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    +W +SG +++Y   M       ++     P +      IF S + 
Sbjct: 289 YGYQEVRTPAVMDRSMWEKSGHWENYRDNMFT-TASENRDYAVKPMNCPGHVQIFNSGLH 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F +  +  +       V   
Sbjct: 348 SYRDLPLRLAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFCMEEQVEQE-VADFIVMLQ 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   + ++  + P     S E                   D    +     +  
Sbjct: 407 KVYADFGFNDVLVKLSTRPDKRVGSDE-----------------SWDKAESALAAALEKN 449

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    +     L D+L    +     ++       G        A F
Sbjct: 450 GLSFDLQPGEGAFYGPKIEF---TLKDTLGRLWQCGTIQLDFNLPVRLG--------AEF 498

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +    +G+M     ++   H G   +W   V    +++       +  
Sbjct: 499 VAEDNTRKIPVMLHRAILGSMERFIGILIEHHAGNFPLWLAPVQVMVMNI------SERQ 552

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E +   L + G     D    +I  +     L   P Q++VG K +    V ++ R
Sbjct: 553 AAYAEAVAEALRRAGIRAALDLSNNKINYKIREHSLQKLPYQLVVGDKEMEARVVAVRAR 612

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  + L+++I          +
Sbjct: 613 GNQDMGQLGLDDLIARLRAEVLARQ 637


>gi|317154070|ref|YP_004122118.1| prolyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944321|gb|ADU63372.1| prolyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
          Length = 579

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 127/227 (55%), Positives = 171/227 (75%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y++P L+E+P DAE+ SHKL++R GMI + + GIY++LPLG ++++ V  I+REE
Sbjct: 1   MRLSRYYIPTLKEDPADAEVVSHKLLMRAGMIRKLTSGIYNYLPLGLRSINKVARIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+S+P +Q ADLW E+GR+D YGKE+LRL DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGAMEVSMPMVQPADLWQETGRWDYYGKELLRLKDRHGRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSFD    G++ SY  MF +
Sbjct: 121 EIKSYKQLPINLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFDRDEAGAETSYWAMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y   F R+GL+  P++A+SG IGGD SHEF+VLADTGE  +   K  
Sbjct: 181 YKAAFSRIGLRFKPVQADSGAIGGDFSHEFMVLADTGEDTIASCKSC 227



 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 105/191 (54%), Gaps = 2/191 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                    +D+   +  D  PE   +    +GIEVGH+F  G KYS  M ATF   +GK
Sbjct: 375 GRDCKIEKFADLRVIEPTDPCPECGSEIEFTKGIEVGHVFKLGLKYSKKMEATFLDENGK 434

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
             Y+ MG YGIG  R+VA+ IE ++D  G  +P S+APF+  LI++   D+       ++
Sbjct: 435 TQYMVMGCYGIGVSRIVASAIEQNNDEAGCCFPPSIAPFEAVLISLGGKDEAVDAKAAEL 494

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y +L  +G D  +DD  E+ G +FA ADL+G+P+Q+++G K ++   VE K R TG + +
Sbjct: 495 YEQLRVLGVDACFDDRKERPGVKFAEADLIGYPMQLVLGGKGLASGIVEAKDRKTGEKIE 554

Query: 429 MSLEEVINYAS 439
           + +       +
Sbjct: 555 LPINGFAEAFT 565


>gi|228921082|ref|ZP_04084417.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838628|gb|EEM83934.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 640

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 153/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   R+      +L L   M  + + G+  +LP GQ   + + A +RE Q   
Sbjct: 234 EYLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQMIRNELEAFLREIQKEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + ++W  SG +  Y   M   ++ ++K+    P +      +F++ + S
Sbjct: 292 KYQEVRTPFMMNQEVWERSGHWGHYKDNM-YFSEVDNKSFALKPMNCPGHMLMFKNKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TP+  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPKQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T            +    +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             + +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DENNEKKRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHE 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++  +L++ G  V  D   E++G +     +   P  +++G K +    V ++   
Sbjct: 556 QYASEVAHKLAQAGIRVEQDARDEKLGYKIREVQMQKVPYVLVIGDKEMEKGAVNVRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E ++L+  +        N +
Sbjct: 616 EEKSEVVALDVFVASIEEEIKNRK 639


>gi|228993303|ref|ZP_04153219.1| Threonyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228766371|gb|EEM15014.1| Threonyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 643

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 168/434 (38%), Gaps = 32/434 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 235 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 294 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 413

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDFDDIISL 245
             GL++   R                  D  +T+ +    +  +          D++   
Sbjct: 414 DFGLENYSFRLS--------------YRDPEDTKKYYADDEMWEKAQSMLKEAMDEMGLE 459

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+ G 
Sbjct: 460 YYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELTYVGE 508

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DGK H   +     G +  +   +    +     +P  +AP ++ +I +    QV  D  
Sbjct: 509 DGKPHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSP--QVHLDYA 564

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++      
Sbjct: 565 KKVQEDLQRAGIRVEVDTREEKIGYKIREAQMQKIPYMLVVGDNEVAENGVNVRKYGEQK 624

Query: 426 REDMSLEEVINYAS 439
            E ++L+  ++   
Sbjct: 625 SETIALDAFVDMIK 638


>gi|229592381|ref|YP_002874500.1| prolyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
 gi|229364247|emb|CAY51951.1| proline tRNA synthetase [Pseudomonas fluorescens SBW25]
          Length = 596

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 116/237 (48%), Positives = 160/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G K +  V AI+REE
Sbjct: 26  MRTSQYLLATQKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLKVMRKVEAIVREE 85

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G++E+ +P+ Q A+LW ESGR++ YG E+LR  DR+ +    GPTHEEV+TD+ R+
Sbjct: 86  MNAAGSLEVLMPSTQPAELWQESGRWEEYGPELLRFKDRHGRDFCAGPTHEEVITDLMRN 145

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 146 ELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQVTYDRMHQA 205

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +    +  D+    E  
Sbjct: 206 YCNVFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVF-SNGSDYAANIEKA 261



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 389 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGNKYSKAM 448

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   ++MG YGIG  RVVAA IE ++D KGIIW D++APF+++L+ ++   
Sbjct: 449 KCEVLGENGKPITLEMGCYGIGVSRVVAAAIEQNNDEKGIIWSDALAPFQVALVPLRYET 508

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + ++D  +
Sbjct: 509 EQVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLADGNL 568

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + + + +V+++   R  
Sbjct: 569 EYKSRTEAEAQPLPVADVLSFLQARIR 595


>gi|301056082|ref|YP_003794293.1| threonyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300378251|gb|ADK07155.1| threonyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 645

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 167/434 (38%), Gaps = 32/434 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISL 245
             GL++   R                  D  +T+ + + D M            D++   
Sbjct: 416 DFGLENYSFRLS--------------YRDPEDTKKYYADDEMWEKAQGMLKEAMDEMGLD 461

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  +L +++ +S   ++    F    ++       + G 
Sbjct: 462 YYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELAYVGE 510

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DGK H   +     G +  +   +    +     +P  +AP +  +I +    QV  D  
Sbjct: 511 DGKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQAQVIPVSP--QVHLDYA 566

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++      
Sbjct: 567 KKVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQK 626

Query: 426 REDMSLEEVINYAS 439
            E ++L+  ++   
Sbjct: 627 SETIALDAFVDMIK 640


>gi|237800208|ref|ZP_04588669.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023065|gb|EGI03122.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 571

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 121/279 (43%), Positives = 173/279 (62%), Gaps = 20/279 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN---- 236
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +    +  D+    E     
Sbjct: 181 YSNIFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVF-SNGSDYAANIEKAEAV 239

Query: 237 ---------------TDFDDIISLNSIVEQWTAPYAATS 260
                           D  +  ++  +VE +  P   T 
Sbjct: 240 PSEKTRPAATEELRLIDTPNTKTIAHLVEGFGLPIEKTV 278



 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 111/207 (53%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +V+V  + +++  +
Sbjct: 484 DAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRVVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   R  
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGRVK 570


>gi|237740439|ref|ZP_04570920.1| threonyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
 gi|229422456|gb|EEO37503.1| threonyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
          Length = 637

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 164/443 (37%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  K+   + +   RD       L L    I ++  G   +LP G    + +  + R+E 
Sbjct: 226 RLKKHLKFMEEAEKRDHRKLGKDLELF--FISEYGPGFPFFLPKGMVFRNVLIDLWRKEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G +++  P + + +LW  SG + +Y + M   ++ ++      P +       F+  
Sbjct: 284 EKAGYLQLETPIMLNKELWEISGHWFNYRENMYT-SEIDELEFAIKPMNCPGGVLSFKHQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     +   
Sbjct: 343 LHSYKDLPARLAELGKVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             R + +L      +   + P     S E                   D    +     D
Sbjct: 402 IDRFYSKLFGFEYEIELSTKPEKAIGSQE-----------------IWDMAESALAGALD 444

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     I     A Y    D    K+ D++    +     ++    F    ++      
Sbjct: 445 KLGRKYKINPGDGAFYGPKLDF---KIKDAIGRMWQCGTIQLD----FNLPERFD----V 493

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G DG+ H    +     G++     ++   + G   +W   V    ++L      + 
Sbjct: 494 TYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMWLAPVQVKVLTL------ND 547

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEI 418
            C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V + +V I
Sbjct: 548 ECIPYAKEIMDKLQELGIRAELDDRNETIGYKIREANGRYKIPMQLIIGKNEVENKEVNI 607

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  +   SL++  +Y    
Sbjct: 608 RRFGSKDQFSKSLDDFYDYVVDE 630


>gi|114776996|ref|ZP_01452016.1| threonyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
 gi|114552517|gb|EAU54977.1| threonyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
          Length = 634

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/434 (16%), Positives = 134/434 (30%), Gaps = 40/434 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD    +  L L    + + + G+  W P G      V   IR      G
Sbjct: 230 YLTRLEEAEKRDHRKLAKSLDLF--HLQEEAPGMIFWHPKGWSVWQQVENEIRGVMRDNG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D + +EM       ++     P +      +F  ++ SY
Sbjct: 288 YQEIKTPQMVDRKLWEKSGHWDKFREEMFT-TSTENRDYAIKPMNCPCHIQVFNQNLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  DA+ F  T    +            +
Sbjct: 347 RDLPLRLAEFGSCHRNEPSGTLHGLMRLRNFVQDDAHIFC-TEAQIQDEVCNFIDLTYDV 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + R G   + +     P     + E                   D    + +   D    
Sbjct: 406 YKRFGFDDVIIFLSDRPEKRVGTDE-----------------QWDKAEAALHQALDSKGI 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++                A +  
Sbjct: 449 EYGLNPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQVDFSMPGKLD--------AEYVA 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   ++GK   W   V     ++           D
Sbjct: 498 EDSSRQTPVMLHRAILGSMERFIGILIEHYEGKFPFWLAPVQVVACNIT------DAQAD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   + K G     D   E++G +     L   P  ++ G +   D  + ++    
Sbjct: 552 YVAEVTKSMHKAGFRAEMDLRNEKVGYKVRAHTLARVPYILVAGDREREDGTISVRDLSG 611

Query: 424 GIREDMSLEEVINY 437
                 S+++ I  
Sbjct: 612 QNLGTFSVDDWIAE 625


>gi|262044730|ref|ZP_06017778.1| proline-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259037920|gb|EEW39143.1| proline-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 572

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P D+E+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADSEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q ++LW ESGR++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVLMPVVQPSELWQESGRWEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELNSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIFSDS-SDYAANIE 234



 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 110/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A  +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKAAVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+YA LS 
Sbjct: 443 CYGIGVTRVVAAAIEQNFDDRGIVWPDAIAPFQVAILPMNMHKSYRVQELAEKLYAELSA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           + Y      
Sbjct: 563 VEYLVKAIK 571


>gi|289207688|ref|YP_003459754.1| prolyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
 gi|288943319|gb|ADC71018.1| prolyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
          Length = 570

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 122/233 (52%), Positives = 161/233 (69%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DAEI SH+LMLR G + + + G+Y+WLPLG + L  V  I+REE
Sbjct: 1   MRVSQFPLNTLKETPADAEIVSHQLMLRAGYVRRLAAGLYTWLPLGLRVLRRVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ESGR+D YG E+LRL DR+++   +GPTHEEV+TD+ R 
Sbjct: 61  MNRAGALEVLMPAVQPAELWQESGRWDFYGAELLRLKDRHERDFCFGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP  +YQIQ KFRDE RPRFG+MR+REFLMKDAYSF L  +    +Y +M  +
Sbjct: 121 EIRSYRQLPVNYYQIQTKFRDERRPRFGIMRAREFLMKDAYSFHLDADSLSRTYQQMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y RIF R GL    + A++G IGG+ SHEF VLA +GE  +  S       + 
Sbjct: 181 YCRIFERCGLDFRAVEADTGAIGGNASHEFHVLASSGEDAIAFSPGGYAANVE 233



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 3/207 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLP 297
           ++   L  +  +   P   +SD+ N    +  P+        RGIEVGHIF  G KYS  
Sbjct: 363 ENGHHLKQVNWERDLPRPESSDLRNITEGEPAPDGSGPIEIRRGIEVGHIFQLGDKYSQA 422

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-A 356
           + A     DG++  V MG YGIG  RVVAA IE + D +GI WP ++APF I+L  I   
Sbjct: 423 LGARVLDEDGREQVVTMGCYGIGVSRVVAAAIEQNSDERGICWPTAIAPFDIALCPIGAK 482

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             Q  R+A EK++  L   G  V  DD  ++ G  FA  +L+G P ++++G + +   ++
Sbjct: 483 KSQRVREAAEKLHDELEAAGFQVLLDDREQRPGVMFADMELIGIPHRLVIGERGLDAGEL 542

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E + R     E + ++ +++    R  
Sbjct: 543 EYQARTASEAEHLPMDGLLDALRERLQ 569


>gi|330975337|gb|EGH75403.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 571

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 164/237 (69%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y++M ++
Sbjct: 121 ELNSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E  
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSD-GSDYAANIEKA 236



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYADLTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   + +
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGKVN 570


>gi|330968902|gb|EGH68968.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 571

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 164/237 (69%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y++M ++
Sbjct: 121 ELNSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E  
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSD-GSDYAANIEKA 236



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYADLTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   + +
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGKVN 570


>gi|330950620|gb|EGH50880.1| prolyl-tRNA synthetase [Pseudomonas syringae Cit 7]
          Length = 571

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 164/237 (69%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y++M ++
Sbjct: 121 ELNSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E  
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSD-GSDYAANIEKA 236



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYADLTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   + +
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGKVN 570


>gi|294634711|ref|ZP_06713243.1| proline--tRNA ligase [Edwardsiella tarda ATCC 23685]
 gi|291091887|gb|EFE24448.1| proline--tRNA ligase [Edwardsiella tarda ATCC 23685]
          Length = 572

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 147/412 (35%), Positives = 201/412 (48%), Gaps = 34/412 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLNKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNYAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +       D+    E     
Sbjct: 181 YSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF-STDSDYAANIELAEAI 239

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--NKRVSARGIEVGHI------- 287
                  +    +E    P+A T     E+    + +     +     E GH        
Sbjct: 240 APTAARAAATQAMELVDTPHAKTIAELVEQHNQPIEKTVKTLLVHAAEESGHTLVALLVR 299

Query: 288 --FYFGTKYSLP-----MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
                    +          TF         V  G   +G + +   ++          +
Sbjct: 300 GDHELNEVKAEKLELVATPLTFANEAEIRALVNAGPGSLGPVNLPLPIVVDRAVAAMSDF 359

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYA-------------RLSKVGCDV 379
                        I     V       I                L K G +V
Sbjct: 360 AAGANIDGKHYFGINWERDVALPQVADIRNVVEGDPSPDGHGTLLIKRGIEV 411



 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 71/188 (37%), Positives = 115/188 (61%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+     +  RGIEVGHIF  GTKY+  ++AT +G DG++  + MG 
Sbjct: 384 VADIRNVVEGDPSPDGHGTLLIKRGIEVGHIFQLGTKYTEALNATVQGEDGRNQLMTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     +D  E++Y  L   
Sbjct: 444 YGIGVTRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHKSFRVKDVAERLYDALRLK 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + + +++VE K+R  G +  +SL+E+ 
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGIPYTIVIGDRNLDNNEVEYKYRRDGEKLMISLDEIE 563

Query: 436 NYASHRFS 443
            +   + +
Sbjct: 564 AFLLAQIA 571


>gi|254491952|ref|ZP_05105130.1| prolyl-tRNA synthetase [Methylophaga thiooxidans DMS010]
 gi|224462767|gb|EEF79038.1| prolyl-tRNA synthetase [Methylophaga thiooxydans DMS010]
          Length = 569

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 121/235 (51%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S   +  L+E P DAEI SH+LMLR G+I + + G+Y+WLP+G K L    AIIR+E
Sbjct: 1   MRASNLLISTLKETPADAEIVSHQLMLRAGLIRRLASGLYTWLPMGLKVLRKTEAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +P++Q ++LW ES R++ YG E+LR+ DR+ +   YGPTHEEV+TD+ R 
Sbjct: 61  MDKAGAQEVLMPSVQPSELWQESQRWEKYGPELLRITDRHQREFCYGPTHEEVITDLVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE+RPRFG+MR+REFLMKDAYSF L     + +Y+ MF +
Sbjct: 121 EIRSYKQLPINFYQIQTKFRDEIRPRFGLMRAREFLMKDAYSFHLDHASLQQTYDDMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL   P++A++G IGG+ SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YSRIFSRIGLDFRPVQADTGSIGGNASHEFHVLASSGEDAIAFSDQ-SDYAANVE 234



 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 112/207 (54%), Gaps = 3/207 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLP 297
           DD   L  +          T+D+ N    D  P+ +     ARGIEVGHIF  G  YS  
Sbjct: 363 DDDKHLTGVNWGRDLAEPDTADLRNVVAGDPSPDGQGTLDIARGIEVGHIFQLGENYSSK 422

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           ++A      GK   + MG YGIG  RVVAA IE ++D +GIIWP+++AP+++ L+ + AH
Sbjct: 423 LNAVVLNETGKSQVITMGCYGIGVSRVVAAAIEQNNDDRGIIWPEAIAPYQVVLVPVNAH 482

Query: 358 DQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             V  +   E+IY +L   G DV  DD G + G  FA  +L+G P ++I+G + + +  +
Sbjct: 483 KSVRVKQKAEEIYQQLQAAGIDVLLDDRGLRPGVAFADMELIGIPHRLILGERGLDNGMI 542

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R TG  ++  +E VI     + S
Sbjct: 543 EYKSRRTGEGDEFPIESVIETIKQKLS 569


>gi|152975545|ref|YP_001375062.1| threonyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152024297|gb|ABS22067.1| threonyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 640

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 154/445 (34%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             KY   + +   R+     ++L L   M  + + G+  +LP GQ   + +   +RE Q 
Sbjct: 232 LKKYLHFVEEAAKRNHRKLGNELELF--MFSEEAPGMPFYLPKGQIIRNELEGFLREIQQ 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + +LW +SG +D Y   M   ++ + K+    P +      IF+  +
Sbjct: 290 AYDYQEVRTPLMMNQELWEKSGHWDHYKDNM-YFSEVDHKSFALKPMNCPGHMLIFKHKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    +     R E      G++R R F   DA+ +    +        +    
Sbjct: 349 RSYRDLPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHIYVTAEQIESE-IQSVLKQI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G +       + P       E    A+                  +       
Sbjct: 408 DYVYRTFGFEYEI-ELSTRPENSMGDDELWNQAEA-----------------ALENVLKS 449

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     I E   A Y    D H   + D+L  + +     ++    F    K+ L     
Sbjct: 450 LQYNYRINEGDGAFYGPKIDFH---IKDALKRSHQCGTVQLD----FQMPEKFDLH---- 498

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +     +      +    +G+     A++     G    W   +    I + N+     V
Sbjct: 499 YIDEKNEKRRPVVIHRAVLGSFDRFLAILIEHFGGAFPAWLAPIQVKVIPVSNL-----V 553

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I  +  +V   V  D   E++G +   A +   P  +++G K + ++ V ++ 
Sbjct: 554 HDSYTKEIEDKFKQVDIRVERDIRNEKLGYKIRDAQIQKIPYVLVIGDKEMENASVNVRK 613

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                 E +SL E I        N 
Sbjct: 614 YGEENSEVVSLHEFIENLQIEIKNR 638


>gi|328957059|ref|YP_004374445.1| threonine--tRNA ligase [Carnobacterium sp. 17-4]
 gi|328673383|gb|AEB29429.1| threonine--tRNA ligase [Carnobacterium sp. 17-4]
          Length = 645

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 160/442 (36%), Gaps = 34/442 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   MI  +   G+  WLP G      +   I + +   
Sbjct: 231 FIKMREEAKLRDHRKLGKELDLF--MISPEVGSGLPFWLPKGATIRRTIERYIVDREISL 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ + 
Sbjct: 289 GYQHVYTPIMADVNLYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDVH 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++    R E       ++    +  +     + P+  +  + +     L 
Sbjct: 349 SYRELPIRIAELGQMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIEEEFKRTLELMLA 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDI 242
           ++    +     R                  D   T+ +   D   +          DD+
Sbjct: 409 VYGDFNITDYRFRLS--------------YRDPNNTEKYYDDDGMWEKAQTMLKAAMDDM 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV    +  ++   + +S   ++    F    ++      T+
Sbjct: 455 ELDYFEAEGEAAFYGPKLDVL---VKTAIGIEETLSTIQLD----FLLPERFD----LTY 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++++  +  +  G +  +   +    +     +P  +AP + ++I +     +  
Sbjct: 504 VGEDGENNHRPVVIHR-GIVSTMERFVAYLIEEYKGAFPTWLAPVQATIIPVNL--DMHT 560

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +I  +L  +G  V  D+  E++G +   +     P Q++VG   V D+ V ++   
Sbjct: 561 DYAYEIKKQLESIGMRVDVDERNEKMGYKIRASQTQKIPYQLVVGDSEVQDNTVAVRKYG 620

Query: 423 TGIREDMSLEEVINYASHRFSN 444
               E + L + I   S    N
Sbjct: 621 EKATETIGLNDYIEKVSSEIKN 642


>gi|190575251|ref|YP_001973096.1| threonyl-tRNA synthetase [Stenotrophomonas maltophilia K279a]
 gi|229558456|sp|B2FN79|SYT_STRMK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190013173|emb|CAQ46806.1| putative threonyl-tRNA synthetase [Stenotrophomonas maltophilia
           K279a]
          Length = 633

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 143/443 (32%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ + ++  ++E   RD      +  L    + + + G+  W P G      V   +R+ 
Sbjct: 227 KQLEAYIKRIEEAEMRDHRRIGKQQDLF--HLQEEAPGLVFWHPKGWALWQVVEQYMRKV 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
              +G  E+  P +    LW +SG +D+Y   M    +   +     P +      +F  
Sbjct: 285 YRNSGYGEVRCPQILDVSLWKKSGHWDNYQDNMF-FTESEKRTYAVKPMNCPGHIQVFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SYR+LP  + +     R+E      G++R R F   D + F  T    +        
Sbjct: 344 GLHSYRDLPIRYGEFGSCHRNEPSGALHGILRVRGFTQDDGHVFC-TENQIESEVTAFHQ 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L ++   G   I ++    P                           D    +  +  
Sbjct: 403 QALAVYQHFGFDEIQIKIALRPESR-----------------LGDDATWDKAEGALRSAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                    +    A Y    + H   L D++    ++    ++       G        
Sbjct: 446 TACGVEWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLG-------- 494

Query: 300 ATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   +  K H V +    +G+M     ++   H G+   W         ++       
Sbjct: 495 AEYVDENSQKKHPVMLHRAIVGSMERFLGILIEHHAGQFPAWLAPTQVVVANIT------ 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D    +   L++ G  V  D   E+IG +     L   P  +++G +   +  V +
Sbjct: 549 DAQADYVSGVTKTLAEQGFRVSSDLRNEKIGYKIREHTLQRVPYLLVIGDREKENGAVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R       MSL+  I      
Sbjct: 609 RTRSGEDLGSMSLQAFIERLHAE 631


>gi|171780136|ref|ZP_02921040.1| hypothetical protein STRINF_01924 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281484|gb|EDT46919.1| hypothetical protein STRINF_01924 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 697

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 155/445 (34%), Gaps = 33/445 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y     +   RD      +L L   MI  +  +G+  WLP G      +   I +++  +
Sbjct: 280 YLKQRQEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYIVDKEVES 337

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIK 123
           G + +  P L S DL+  SG +D Y ++M    D  D +  +  P +      +++ H+ 
Sbjct: 338 GYLHVYTPPLASVDLYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIQVYKYHVH 397

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    +I +  R E       ++    +  +     +TPE  +  + K     + 
Sbjct: 398 SYRELPIRIAEIGMMHRYEKSGALSGLQRVREMSLNDGHLFVTPEQIQEEFQKALQLIID 457

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    L     R                       + +   +  +          D++ 
Sbjct: 458 VYEDFNLTEYRFRLSLRD-------------PKDTHKYYDDDEMWENAQSMLKAALDEMG 504

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    D+   ++  +L   + +S   ++    F    ++      T+ 
Sbjct: 505 VEYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERF----GLTYI 553

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           GADG++H   M   G+ +       I   +         +          I   ++   D
Sbjct: 554 GADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQV----TVIPVSNEAHVD 609

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I   L   G  V  D+  E++  +   +     P Q+IVG K ++D  V ++   +
Sbjct: 610 YAWEIAKVLRDKGVRVDVDERNEKMQLKIRQSQTKKIPYQLIVGDKEMADKTVNVRRYGS 669

Query: 424 GIREDMSLEEVINYASHRF-SNNRP 447
                 S++E +          +RP
Sbjct: 670 KQTHTESIDEFVENILADIDRKSRP 694


>gi|308049557|ref|YP_003913123.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Ferrimonas
           balearica DSM 9799]
 gi|307631747|gb|ADN76049.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Ferrimonas
           balearica DSM 9799]
          Length = 644

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 151/447 (33%), Gaps = 39/447 (8%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L      + + G+  W   G      +   +R++
Sbjct: 227 KQLKAYLQRLEEAAKRDHRKIGKALDLF--HWQEEAPGMVFWHNDGWTIYQELEGFMRKQ 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+  P +    +W  SG +D Y  EM+   +   +     P +      IF+ 
Sbjct: 285 LHKYGYEEVRTPLVMDKVMWERSGHWDKY-SEMIFATESEKRTYAVKPMNCPGHLQIFKQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP+   +  L  R+E      G+MR R F   DA+ F    +           
Sbjct: 344 GLKSYRDLPYRMAEFGLVHRNEPSGSLHGLMRVRSFTQDDAHIFCTEEQILDE-VTSCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G + I ++  + P                      S D  D    S     
Sbjct: 403 MVYDTYKTFGFEEIEVKLSTRPEQR-----------------IGSDDLWDKAEKSLAEAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D       +     A Y    +     L D L    +     ++      F       + 
Sbjct: 446 DANGLKYELQPGEGAFYGPKIEF---TLHDCLDRAWQCGTIQLD------FSMPQPERLD 496

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++ G D      V +    +G++     ++    +      P  +AP ++ ++NI  + 
Sbjct: 497 VSYVGEDNSRKVPVMIHRAILGSLERFIGILI---EEYAGKLPTWLAPTQVQVMNITDN- 552

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   ++   L+  G     D   E+IG +     L   P  ++ G + + + ++ I
Sbjct: 553 --QADYVRQVVEMLNDQGIRAKADLRNEKIGFKIREHTLKRVPYLLVCGDQEMENGEIAI 610

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       M LE+     +      
Sbjct: 611 RTRNGVDLGKMKLEQFAAAVAQEIRTR 637


>gi|332297469|ref|YP_004439391.1| threonyl-tRNA synthetase [Treponema brennaborense DSM 12168]
 gi|332180572|gb|AEE16260.1| threonyl-tRNA synthetase [Treponema brennaborense DSM 12168]
          Length = 583

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 148/444 (33%), Gaps = 37/444 (8%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++ +L +   RD      ++ L    I + S G   W P G      +   +R +   
Sbjct: 170 KAYVDMLAEAERRDHRKIGKEMDLF--HIDEDSPGQIFWHPNGWTIYRILEDYVRTKIKA 227

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW  SG +  Y + M  + +   +     P +     +IF+  I+
Sbjct: 228 DGYVEVKTPFVMPQSLWERSGHWAKYKENMF-ITESEKRIFALKPMNCPGHIEIFKQRIR 286

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    +     R+E      G+MR R F+  DA+ F    +              
Sbjct: 287 SYKDLPLRMAEFGSCTRNEASGALHGIMRVRGFVQDDAHIFCTEAQIPSEV--------- 337

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                   K   +  +     G    + +V   T   +        D    +        
Sbjct: 338 -------AKFCHLLKDMYKDFGFTDDKILVKFSTRPEKRVGDDATWDRAEGALADACKQA 390

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I     A Y    +     L D+L    +     ++           +  ++A +
Sbjct: 391 GLAYEIQPGEGAFYGPKLEF---TLVDALGREWQCGTIQVDYQLP------SAERLNAEY 441

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D  K H V +    +G++     ++  +  G    W        I +          
Sbjct: 442 IGDDNAKHHPVMLHRAVLGSLERFIGILIENFAGAFPTWLHYQQTVVIPVAP------AF 495

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               EK+ A L   G     D   +++ ++  +A     P  ++VG K  +D  V ++ R
Sbjct: 496 NGYAEKVQAALKAAGIRSDCDLGNDRMNAKIRLAQTQKIPYMLVVGEKEAADGTVAVRFR 555

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
               ++ MS+ +   Y      N+
Sbjct: 556 DGRPQQIMSVGDFTAYVRETVENH 579


>gi|297530568|ref|YP_003671843.1| prolyl-tRNA synthetase [Geobacillus sp. C56-T3]
 gi|297253820|gb|ADI27266.1| prolyl-tRNA synthetase [Geobacillus sp. C56-T3]
          Length = 567

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 121/235 (51%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G I Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQAFIPTLREVPADAEVKSHQLLLRAGFIRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++    GPTHEE++T I R 
Sbjct: 61  MNRIGAMELFMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFALGPTHEEMITAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +YN M+ +
Sbjct: 121 EVKTYKRLPLVLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHTSKESLDETYNNMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL    + A+SG IGG  +HEF+VL+D GE  +  S    D+    E
Sbjct: 181 YANIFRRCGLNFRAVIADSGAIGGKDTHEFMVLSDIGEDTIAYSD-ASDYAANIE 234



 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 72/197 (36%), Positives = 106/197 (53%), Gaps = 3/197 (1%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADG 307
                  +  +D+   K  D  P+ K      RGIEVGH+F  GTKYS  M+A +   +G
Sbjct: 372 PGRDFAVSQYADLRFVKEGDPSPDGKGTIRFARGIEVGHVFKLGTKYSEAMNAVYLDENG 431

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +   + MG YGIG  R+VAA+ E   D  G++WP SVAPF I L+   A         E+
Sbjct: 432 QTQTMIMGCYGIGVSRLVAAIAEQFADEHGLVWPASVAPFHIHLLTANAKSDEQHALAEE 491

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            Y +L + G +V +DD  E+ G +FA +DL+G PL+V VG +   +  VE+K R TG   
Sbjct: 492 WYEKLGQAGFEVLYDDRPERAGVKFADSDLIGIPLRVTVGKR-AGEGVVEVKVRKTGETF 550

Query: 428 DMSLEEVINYASHRFSN 444
           D+ + E+++ A     +
Sbjct: 551 DVPVSELVDTARRLLQS 567


>gi|120602767|ref|YP_967167.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
 gi|152112308|sp|A1VE74|SYP_DESVV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120562996|gb|ABM28740.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
          Length = 574

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 127/237 (53%), Positives = 167/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P L+E P DAE+ SHKL++R GMI + + GIY+++P+G +AL+ V AI+REE
Sbjct: 1   MRWSRCYIPTLKEAPSDAEVVSHKLLVRAGMIRKLTSGIYTFMPMGLRALNKVAAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q ADLW E+GR++ YGKE+LR  DRND+    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQEVLMPMVQPADLWQETGRWEFYGKELLRFRDRNDRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G   SY  M+ +
Sbjct: 121 EVRSYRQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDRDQAGCDESYKAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF RLGL+   + A+SG IGG  SHEF+VLADTGE  +       ++    E  
Sbjct: 181 YQRIFSRLGLRFRAVEADSGSIGGSFSHEFMVLADTGEDTLAVCTAC-EYAANVERA 236



 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 2/190 (1%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A   A +D+      D  P         +GIEVGH+F  G KYS  M+ATF   +GK+ 
Sbjct: 374 DAAIEAYADLRMITASDPCPRCGGAVELPKGIEVGHVFKLGLKYSKSMNATFLDENGKEQ 433

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MG YGIG  RVVA+ IE ++DG GI++P  +AP++++L+ +   ++       +I +
Sbjct: 434 VMVMGCYGIGVSRVVASCIEQNNDGDGIVFPPPIAPYEVALLLLDPKNEEAAAKAAEIES 493

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G DV  DD  E+ G +F  ADL+G P Q+++G K ++   VE K+R +G + ++ 
Sbjct: 494 FLEAEGHDVLLDDRDERPGVKFKDADLIGSPYQLVLGGKGLARGVVEAKNRRSGEKTELP 553

Query: 431 LEEVINYASH 440
           +E        
Sbjct: 554 VEGFAEAFRD 563


>gi|310764925|gb|ADP09875.1| prolyl-tRNA synthetase [Erwinia sp. Ejp617]
          Length = 572

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 120/235 (51%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LRL DR+D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRLVDRSDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQGSLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y + F R+GL    ++A++G IGG+ SHEF VLA +GE  +       D+    E
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF-STGSDYAANIE 234



 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 69/192 (35%), Positives = 109/192 (56%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M A+ +G DG++  +
Sbjct: 380 PLPRIADIRNVVEGDASPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKASVQGEDGRNQIL 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIW  ++APF+++++ +        ++  E++Y +
Sbjct: 440 TMGCYGIGITRIVAAAIEQNHDERGIIWSPALAPFQVAILPMNMQKSFRVKELAEELYHQ 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  V++G + +   ++E K R  G +  M  
Sbjct: 500 LRAKGIDVILDDRKERPGVMFADMELIGVPHTVVIGERNLDSEEIEYKSRRAGEKRMMKT 559

Query: 432 EEVINYASHRFS 443
            E++++     +
Sbjct: 560 NEIVDFLVAELA 571


>gi|259907567|ref|YP_002647923.1| prolyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|224963189|emb|CAX54673.1| Prolyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|283477409|emb|CAY73325.1| proS [Erwinia pyrifoliae DSM 12163]
          Length = 572

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 120/235 (51%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LRL DR+D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRLVDRSDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQGSLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y + F R+GL    ++A++G IGG+ SHEF VLA +GE  +       D+    E
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF-STGSDYAANIE 234



 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 109/192 (56%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M A+ +G DG++  +
Sbjct: 380 PLPRIADIRNVVEGDASPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKASVQGEDGRNQIL 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIW  ++APF+++++ +        ++  E++Y +
Sbjct: 440 TMGCYGIGITRIVAAAIEQNHDERGIIWSPALAPFQVAILPMNMQKSFRVKELAEELYHQ 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  V++G + +   +VE K R  G +  M  
Sbjct: 500 LRAKGIDVILDDRKERPGVMFADMELIGIPHTVVIGERNLDSEEVEYKSRRAGEKRMMKT 559

Query: 432 EEVINYASHRFS 443
            E++++     +
Sbjct: 560 NEIVDFLVAELA 571


>gi|312962836|ref|ZP_07777323.1| prolyl-tRNA synthetase [Pseudomonas fluorescens WH6]
 gi|311282863|gb|EFQ61457.1| prolyl-tRNA synthetase [Pseudomonas fluorescens WH6]
          Length = 571

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 116/237 (48%), Positives = 160/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G K +  V AI+REE
Sbjct: 1   MRTSQYLLATQKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLKVMRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G++E+ +P+ Q A+LW ESGR++ YG E+LR  DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGSLEVLMPSTQPAELWQESGRWEEYGPELLRFKDRHGRDFCAGPTHEEVITDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADQASLQVTYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +    +  D+    E  
Sbjct: 181 YCNVFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVF-SNGSDYAANIEKA 236



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGNKYSKAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE ++D KGIIW D++APF+++L+ ++   
Sbjct: 424 KCEVLGENGKPITLDMGCYGIGVSRVVAAAIEQNNDDKGIIWSDALAPFQVALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + ++D  +
Sbjct: 484 EQVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLADGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + + + +V+++   R  
Sbjct: 544 EYKSRTEAEAQPLPVADVLSFLQARIR 570


>gi|254447322|ref|ZP_05060789.1| threonyl-tRNA synthetase [gamma proteobacterium HTCC5015]
 gi|198263461|gb|EDY87739.1| threonyl-tRNA synthetase [gamma proteobacterium HTCC5015]
          Length = 637

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 150/438 (34%), Gaps = 41/438 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD    +  L L    + + + G+  W   G +    V   IR+   +
Sbjct: 229 KAHLTMLEEAEKRDHRKLAKSLDLF--HMQEEAPGMVFWHDKGWQIYVQVQDYIRQLLRQ 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW +SG +D +  +M+      ++     P +      I+   +K
Sbjct: 287 HDYQEVHTPQVVDRVLWEKSGHWDKF-GDMIFSTHSENRDYAVKPMNCPCHVQIYNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F    +      +       
Sbjct: 346 SYRDLPLRMAEFGSCHRNEPSGTLHGLMRVRNFVQDDAHIFCTEDQIQSE-VSAFIDLVF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G + + +   + P                           D    +     ++ 
Sbjct: 405 QVYKDFGFEEVQVALSTRPEER-----------------VGEDALWDKAENALEVALNNK 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               ++     A Y    +     L D L    +     ++    F   T+    + A +
Sbjct: 448 DLDFTLQPGEGAFYGPKIEF---ALKDCLGRVWQCGTIQVD----FSMPTR----LEADY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG       +    +G++     ++    +     +P  +AP + +++NI       
Sbjct: 497 VAEDGSRKTPVMLHRAILGSLERFIGILI---EEHEGRFPVWLAPVQAAILNITDKQADF 553

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   +    L   G  V  D   E+IG +     L   P   +VG + V +  V ++ R
Sbjct: 554 VEKARQ---TLENQGLRVVSDLRNEKIGFKIREHTLQRVPYLFVVGDREVENESVAVRTR 610

Query: 422 LTGIREDMSLEEVINYAS 439
                  M+++E +    
Sbjct: 611 SGEDLGTMTVDEAVQLIK 628


>gi|134282011|ref|ZP_01768717.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|134246540|gb|EBA46628.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
          Length = 681

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/437 (16%), Positives = 144/437 (32%), Gaps = 39/437 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L      + + G   W P G      + A +R  Q   G
Sbjct: 243 YIQRMEEAEKRDHRKLGRELDLF--HFQEDAPGAVFWHPRGWAVFQELIAYMRRRQQDAG 300

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E++ P +    LW  SG + +Y   M      + +A+   P +      ++R  +KSY
Sbjct: 301 YVEVNSPDVMDRSLWEISGHWQNYRDHMFTTETEDGRALALKPMNCPGSALLYRHGLKSY 360

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G++R R F   DA+ +  TP+       ++    L I
Sbjct: 361 RDLPIRMGEFGKVHRYEPSGSLHGLLRVRHFTQDDAHIYC-TPQQMDAECREVVTLVLDI 419

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++  + P                      +    D    +     + +  
Sbjct: 420 YRQFGFDEVRIKLSTRPENR-----------------MGTDATWDQLEGTLVQALEGMGL 462

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D++  + +     +++     FG          +  
Sbjct: 463 QYHLKPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVDMNLPERFG--------IEYVD 511

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+      +     G++     ++   H G+  +W   +    +S+       +    
Sbjct: 512 EDGQRKRPVMLHRALFGSLERFTGILIEHHAGRLPVWLAPLQAIVLSIT------EAHGA 565

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L   G     D   E IG +     L   P  ++VG+K      V I+ R  
Sbjct: 566 YAQDVARLLRGAGLRAEADIRNETIGYKIREQTLQRIPFLLVVGAKERDAGAVAIRTRNG 625

Query: 424 GIREDMSLEEVINYASH 440
                + L + +     
Sbjct: 626 DDLGVLPLTQAVARLLQ 642


>gi|296327515|ref|ZP_06870061.1| threonine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296155341|gb|EFG96112.1| threonine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 637

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 161/443 (36%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R   +   + +   RD      +L L    + ++  G   +LP G    + +  + R E 
Sbjct: 226 RLKHHLKLMEEAEKRDHRKLGKELELF--FLSEYGPGFPFFLPKGMIVRNVLIDLWRREH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  ++  P + + +LW  SG + +Y + M   ++ ++      P +       F+  
Sbjct: 284 EKAGYQQLETPIMLNKELWEISGHWFNYRENMYT-SEIDELEFAIKPMNCPGGVLAFKHQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     +   
Sbjct: 343 LHSYKDLPARLAELGRVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + + +L      +   + P     S E                   D    +     D
Sbjct: 402 IDKFYSKLFGFEYEIELSTKPEKAIGSQE-----------------IWDMAEAALAGALD 444

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     I     A Y    D    K+ D++    +     ++    F    ++      
Sbjct: 445 KLGRKYKINPGDGAFYGPKLDF---KIKDAIGRMWQCGTIQLD----FNLPERFD----V 493

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G DG+ H    +     G++     ++   + G   +W   V    ++L      + 
Sbjct: 494 TYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMWLAPVQVKVLTL------ND 547

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEI 418
            C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V + +V I
Sbjct: 548 ECIPYAKEIMNKLEELGIRAELDDRNETIGYKIREANGKYKIPMQLIIGKNEVENKEVNI 607

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  +   SL+E   Y    
Sbjct: 608 RRFGSKDQFSKSLDEFYTYVVDE 630


>gi|300722778|ref|YP_003712069.1| threonine tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
 gi|297629286|emb|CBJ89885.1| threonine tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
          Length = 642

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/442 (15%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFVRTKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    +W ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRIMWEKTGHWENYKENMFT-TSSENREYCVKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  +   +        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEDQILQE-VSSCIKMIYDV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     + +    A+    +            P E         
Sbjct: 408 YGTFGFEKIVVKLSTRPEKRIGTEKQWDEAEADLAKALTQNSIEFEYQPGE--------- 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F    + S    A++ G
Sbjct: 459 --------GAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPARLS----ASYVG 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G++     ++   + G    W        +++           +
Sbjct: 500 ENNERKVPVMIHRAVLGSLERFIGILTEEYAGFFPTWLAPQQVVVMNIT------DGQSN 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +L  VG     D   E+IG +     L   P  ++ G K V   KV ++ R  
Sbjct: 554 YVQELVKKLQDVGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVSVRTRRG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + + E          + 
Sbjct: 614 KDLGSIDVSEFTEKLLTEIRSR 635


>gi|229163567|ref|ZP_04291517.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
 gi|228619949|gb|EEK76825.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
          Length = 646

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 166/433 (38%), Gaps = 30/433 (6%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 238 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 296

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 297 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 356

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 357 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 416

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             GL++   R             +   ADT   + +   +  +          D++    
Sbjct: 417 DFGLENYSFRLS-----------YRDPADTK--KYYADDEMWEKAQGMLKEAMDEMGLDY 463

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV   ++  +L +++ +S   ++    F    ++       + G D
Sbjct: 464 YEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELAYVGED 512

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK H   +     G +  +   +    +     +P  +AP +  +I +    QV  D  +
Sbjct: 513 GKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQAQVIPVSP--QVHLDYAK 568

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++       
Sbjct: 569 KVQDELRRAGIRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQKS 628

Query: 427 EDMSLEEVINYAS 439
           E ++L   ++   
Sbjct: 629 ETIALAAFVDMIK 641


>gi|198284332|ref|YP_002220653.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666034|ref|YP_002426993.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|259516307|sp|B7J7T0|SYT_ACIF2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516338|sp|B5EN57|SYT_ACIF5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|198248853|gb|ACH84446.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518247|gb|ACK78833.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 644

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 146/437 (33%), Gaps = 38/437 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y   + +   RD      +L L +  I +    G+  W P+G +    +    +E     
Sbjct: 231 YLQQLAEAEKRDHRRIGTELELFS--IQEDAGGGLVFWHPMGSRVRRVIEDFWKEAHVEA 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +    LW  SG  D Y + M        +A    P +      I++  + S
Sbjct: 289 GYDLLYTPHIAHEQLWYTSGHKDFYSESMFDPMQDEGQAYQLKPMNCPFHILIYKDKLHS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + ++   +R E+     G+MR R F   DA+ F   P+  +     + V   +
Sbjct: 349 YRDLPIRWAELGTVYRHEMSGALHGLMRVRGFTQDDAHVFCR-PDQIEAEIGAVLVLVRK 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G     +   + P     S E                   D    +     +   
Sbjct: 408 ILGTFGFDQYEINLSTRPGHSVGSDE-----------------IWDAATQALRNALERAG 450

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               +     A Y    D+   K+ D++    + S   ++    F    ++++   A   
Sbjct: 451 LEYQVDAGGGAFYGPKIDL---KIQDAIGRKWQCSTVQLD----FNLPERFAMEYVAE-- 501

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               +   + +     G++     V+   ++GK  +W   V    + +       +   +
Sbjct: 502 -DGARKVPIMVHRAIFGSIERFFGVLIEHYEGKFPVWLAPVQAVVLPI------SEHYSE 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E +   L K G     D   E+IG +     L   P  ++VG +      V ++ R  
Sbjct: 555 YAESVSDVLVKRGIRAETDLRNEKIGYKIRAHTLRRVPYLLVVGEREKEAGTVAVRDRNG 614

Query: 424 GIREDMSLEEVINYASH 440
                +S++ V      
Sbjct: 615 QDLGTLSIDAVGATLQK 631


>gi|143764|gb|AAA22863.1| threonyl-tRNA synthetase (thrS2) (EC 6.1.1.3) [Bacillus subtilis]
          Length = 638

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 145/442 (32%), Gaps = 44/442 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   M  + + G+  +LP GQ   + +    RE Q   G 
Sbjct: 235 LHMLEEAAKRDHRKLGKQLGLF--MFSEEAPGMPFYLPKGQIVRNELERFSRELQTNAGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y   M   ++ +D      P +      IF++ + SYR
Sbjct: 293 DEVRTPFMMNQRLWEQSGHWDHYRDNM-YFSEVDDTRFAMKPMNCPGHMLIFKNSLYSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R E      G++R R F   DA+ F    +        + +      
Sbjct: 352 DLPIRMAEFGQVHRHEYSGALNGMLRVRTFCQDDAHIFVREDQIESEIKEAIRLI----- 406

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                           +      E+ V   T            +    +     +++   
Sbjct: 407 --------------DEVYRTFGFEYSVELSTRPEDSLGDDSLWEASERALARVLEELGLS 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    D H   + D+L  + + +   ++    F    K+      T+   
Sbjct: 453 YEINEGDGAFYGPKIDFH---IKDALKRSHQCATIQLD----FQMPEKFD----LTYINE 501

Query: 306 DGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +     +    +     R    +IE       +                     V  D
Sbjct: 502 LNEKVRPVVIHRAVFGSIDRFFGILIEHYGGAFPVWLAPIQVQIIPV-------SHVHLD 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C K+ A L + G     D+  E++G +   + +   P  +++G     ++ V ++    
Sbjct: 555 YCRKVQAELKQAGIRAGIDERNEKLGYKIRESQVQKIPYVLVLGDHEEQENAVNVRRFGH 614

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              E +  +   +    +  N 
Sbjct: 615 QQNEHVPFQTFKDKLVKQVENR 636


>gi|309389087|gb|ADO76967.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Halanaerobium
           praevalens DSM 2228]
          Length = 643

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 145/443 (32%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           KY   + +   RD      +L L +  +    +G   + P G    + +    +EE  + 
Sbjct: 231 KYLNRVEEAKKRDHRKLGKELDLFS--MQDEGRGFPFFHPKGMALRNALVDFWKEEHYQA 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    LW +SG +D Y   M      +++A    P +      +++  + S
Sbjct: 289 GYEEIQTPIILDESLWHQSGHWDHYQDNM-YFTKIDEEAHAVKPMNCPGGILVYKDSMHS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++ L  R E+     G+MR R F   DA+ + L P   +   + +     +
Sbjct: 348 YRELPIRMAELGLVHRHEMSGALHGLMRVRSFTQDDAHIYCL-PSQIETELSGVIKLVDK 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I+   G                      V   T   +        +    +     +   
Sbjct: 407 IYSAFGFNYN------------------VELSTKPEKAMGDDALWNKATDALQNAIEKNN 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               +     A Y    D H E   DSL    +     ++    F    ++       + 
Sbjct: 449 LDYEVNAGDGAFYGPKIDFHLE---DSLGRTWQCGTIQLD----FQMPERFD----LNYI 497

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG++H    +     G++     ++     G    W           + I        
Sbjct: 498 GQDGEEHRPVMIHRAIYGSIERFIGILIEHFAGAFPTW------MAPVQVEIIPVSDDQI 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++   L +    V  D   E++G +   A +   P  +IVGS+   +  V ++ R 
Sbjct: 552 DYAMQVKEELKQEKIRVEVDSRSEKVGYKIRDAQVKQVPYMLIVGSREEDNGTVSVRDRR 611

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G     +L E         +  
Sbjct: 612 EGDLGTSNLAEFKENILEEIAAK 634


>gi|221311719|ref|ZP_03593566.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221316045|ref|ZP_03597850.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320956|ref|ZP_03602250.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221325241|ref|ZP_03606535.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|255767793|ref|NP_391636.2| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|254763338|sp|P18256|SYT2_BACSU RecName: Full=Threonyl-tRNA synthetase 2; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225185421|emb|CAB15783.2| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 638

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 145/442 (32%), Gaps = 44/442 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   M  + + G+  +LP GQ   + +    RE Q   G 
Sbjct: 235 LHMLEEAAKRDHRKLGKQLGLF--MFSEEAPGMPFYLPKGQIVRNELERFSRELQTNAGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y   M   ++ +D      P +      IF++ + SYR
Sbjct: 293 DEVRTPFMMNQRLWEQSGHWDHYRDNM-YFSEVDDTRFAMKPMNCPGHMLIFKNSLYSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R E      G++R R F   DA+ F    +        + +      
Sbjct: 352 DLPIRMAEFGQVHRHEYSGALNGMLRVRTFCQDDAHIFVREDQIESEIKEAIRLI----- 406

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                           +      E+ V   T            +    +     +++   
Sbjct: 407 --------------DEVYRTFGFEYSVELSTRPEDSLGDDSLWEASERALARVLEELGLS 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    D H   + D+L  + + +   ++    F    K+      T+   
Sbjct: 453 YEINEGDGAFYGPKIDFH---IKDALKRSHQCATIQLD----FQMPEKFD----LTYINE 501

Query: 306 DGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +     +    +     R    +IE       +                     V  D
Sbjct: 502 LNEKVRPVVIHRAVFGSIDRFFGILIEHYGGAFPVWLAPIQVQIIPV-------SHVHLD 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C K+ A L + G     D+  E++G +   + +   P  +++G     ++ V ++    
Sbjct: 555 YCRKVQAELKQAGIRAGIDERNEKLGYKIRESQVQKIPYVLVLGDHEEQENAVNVRRFGH 614

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              E +  +   +    +  N 
Sbjct: 615 QQNEHVPFQTFKDKLVKQVENR 636


>gi|254522893|ref|ZP_05134948.1| threonyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
 gi|219720484|gb|EED39009.1| threonyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
          Length = 633

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 144/443 (32%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ + ++  ++E   RD      +  L    + + + G+  W P G      V   +R+ 
Sbjct: 227 KQLEAYIKRIEEAEMRDHRRIGKQQDLF--HLQEEAPGLVFWHPKGWALWQVVEQYMRKV 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +TG  E+  P +    LW +SG +D+Y   M    +   +     P +      +F  
Sbjct: 285 YRKTGYGEVRCPQILDVSLWQKSGHWDNYQDAMF-FTESEKRTYALKPMNCPGHVQVFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + SYR+LP  + +     R+E      G++R R F   D + F  T    +        
Sbjct: 344 GLHSYRDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFC-TENQVEAEVTAFHQ 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L ++   G   I ++    P                           D    +  +  
Sbjct: 403 QALAVYQHFGFDEIQVKIALRPESR-----------------LGDDATWDKAEGALRSAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                    +    A Y    + H   L D++    ++    ++       G        
Sbjct: 446 SSNGVEWQELPGEGAFYGPKIEYH---LKDAIGRTWQLGTMQVDFMMPGRLG-------- 494

Query: 300 ATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   +  K H V +    +G+M     ++   H G+   W         ++       
Sbjct: 495 AEYVDENSQKKHPVMLHRAIVGSMERFLGILIEHHAGQFPAWLAPTQVVVANIT------ 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +    +   L++ G  V  D   E+IG +     L   P  +++G +   +  V +
Sbjct: 549 DAQAEYVSGVTKTLAEQGFRVSSDLRNEKIGYKIREHTLQRVPYLLVIGDREKENGAVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R       MSL+  I      
Sbjct: 609 RTRSGEDLGSMSLQAFIERLHAE 631


>gi|307244344|ref|ZP_07526458.1| threonine--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
 gi|306492310|gb|EFM64349.1| threonine--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
          Length = 664

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 157/441 (35%), Gaps = 41/441 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L   MI     G   +LP G      +     E       
Sbjct: 255 LFMLEEAKKRDHRKIGKELGLF--MIPDEGPGFPLFLPRGTALKAALMKYWEEVHREAHY 312

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +E+  P + +  LW  SG +  Y + M  +   +++     P +       ++S + SYR
Sbjct: 313 VEIETPIILNRKLWETSGHWFHYKENMYTVQ-IDEEDYAIKPMNCPGAMLFYKSQLHSYR 371

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + P    +     R EL     G+MR R F   DA+ + L  +       ++     +++
Sbjct: 372 DFPMRVGERGRVHRHELSGALHGLMRVRAFTQDDAHIYCLPDQIRSE-VKEVINLIDKVY 430

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
            + G     +   + P     + E   +A+ G                      +++   
Sbjct: 431 KQFGFSYH-VELSTRPEDSMGTDEEWAIAEDG-----------------LRGALEEMGME 472

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             + E   A Y    D H   L D L    +     +++        ++     AT+ G 
Sbjct: 473 YRVNEGDGAFYGPKIDFH---LKDCLGRTWQCGTCQLDM----QLPQRFD----ATYVGK 521

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H    +    +G++     ++  ++ GK  +W           + + +      D 
Sbjct: 522 DGEKHRPVMLHRVALGSIERFIGILIENYAGKFPVW------LAPCQVKVLSVSDKYNDF 575

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L   G  V  D   E++G +   A L   P  ++VG K +    + ++ R  G
Sbjct: 576 AKELQDKLFDAGIRVELDYRAEKVGFKIREAQLEKIPYMLVVGEKEMESCLLSVRSRDEG 635

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS+E+ +   + + ++ 
Sbjct: 636 ELGQMSVEDFLAKINKQIADR 656


>gi|187607298|ref|NP_001120088.1| prolyl-tRNA synthetase 2, mitochondrial (putative) [Xenopus
           (Silurana) tropicalis]
 gi|165971208|gb|AAI58530.1| LOC100145097 protein [Xenopus (Silurana) tropicalis]
          Length = 466

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 144/458 (31%), Positives = 220/458 (48%), Gaps = 50/458 (10%)

Query: 3   RSKYFLPI---------LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ + P           +  P +    S KLM++ G+I   S G + +LP   +A++ +
Sbjct: 33  LSRLYQPRSLWEVKASETEAKPNEPTSKSQKLMIKAGLIRPSSPGCFHYLPFTVRAMEKL 92

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++ +PTL SA LW +SGR+D  GKE+ RL DR+++    GPTHEE 
Sbjct: 93  IRLIDKEMQDIGGQKIDMPTLSSAALWRQSGRWDLMGKELFRLMDRHNQEYCLGPTHEEA 152

Query: 114 MTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T +  S    + + LP   YQI  KFRDE RP FG++R REF MKD Y+FD++ E +  
Sbjct: 153 VTHLVASEGGINNKELPLLLYQITRKFRDEQRPCFGLLRGREFYMKDMYTFDISDESAYE 212

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y  IF  LG++ + ++A++G IGG +SHEF + A+ GE ++       DF  
Sbjct: 213 TYRNVCDAYTNIFRALGVRFVKVQADTGNIGGKMSHEFHLPANIGEDRLLVCGSC-DFSA 271

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
             E                           HNEK        +    +GIE+GH FY GT
Sbjct: 272 NVELLQ------------------------HNEKNCPVCT-GQLKETKGIEIGHTFYLGT 306

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS    AT   +       +MG YGIG  R++AA +E       I WP  +AP+++ LI
Sbjct: 307 KYSHVFKATCYDSQKTPFIAEMGCYGIGVSRLLAASLEVLSKEDDIHWPGLIAPYQVCLI 366

Query: 353 NIKA--HDQVCRDACEKIYAR-------LSKVGCDVFWDDMG-EQIGSQFAVADLLGFPL 402
           + K    +       E +Y         L     +   DD     IG +   A + G+P 
Sbjct: 367 SPKKGSKESEAITISETLYDEIIQSVPWLRD---ETVLDDRSYLTIGKRVKEAHMTGYPY 423

Query: 403 QVIVGSKFVSDSKV-EIKHRLTGIREDMSLEEVINYAS 439
            ++VG K +    + E++   T      S E VI++  
Sbjct: 424 IIVVGKKALETPSLFEVRSHNTDEVHFFSREGVIDFLQ 461


>gi|229060032|ref|ZP_04197403.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
 gi|228719251|gb|EEL70859.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
          Length = 639

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 152/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           K+   + +   R+      +L L   M  + + G+  +LP GQ   + + A +R  QN  
Sbjct: 234 KHLHFVEEAAKRNHRKLGSELELF--MFSEEAPGMPFYLPKGQIIRNELEAFLRGIQNEY 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + + +LW +SG +  Y   M   ++ + K+    P +      +F+  + S
Sbjct: 292 NYQEVRTPFMMNQELWEKSGHWGHYKDNM-YFSEVDHKSFALKPMNCPGHMLMFKYKLHS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R E      G++R R F   DA+   +TPE  +     +      
Sbjct: 351 YRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPEQIEDEIKSVMAQIDY 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   E+ V   T                 +       + 
Sbjct: 410 VYKTFG------------------FEYEVELSTRPEDSMGDDKLWKQAEAALENVLHSLN 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D H   + D+L  + +     ++    F    K+       + 
Sbjct: 452 YKYRLNEGDGAFYGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYI 500

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               +      +    +G++    A++     G    W        + +  I   + V  
Sbjct: 501 DEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVA-----PVQVKVIPVSNAVHV 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   ++  +L++ G  V  D   E++G +   A +   P  +++G K +    V I+   
Sbjct: 556 EYANEVADKLAQAGIRVERDIRDEKLGYKIREAQMQKVPYVLVIGDKEMESEAVNIRKYG 615

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E ++L+  +        + +
Sbjct: 616 EEKSEVVALDVFVASIEEEIKDKK 639


>gi|171463016|ref|YP_001797129.1| prolyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|226701317|sp|B1XT38|SYP_POLNS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|171192554|gb|ACB43515.1| prolyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 580

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ FL  L+E P DAE+ SHKLM+R G+I + S G+Y++LPLG K +  V  IIREE
Sbjct: 1   MKASQSFLATLKEAPSDAEVVSHKLMVRAGLIRKLSAGVYNYLPLGLKVIRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW E+GR++  G E+LR+ DR+D+  +  PT EEV+TD+ R+
Sbjct: 61  MNRAGAIELLMPMIQPAELWQETGRWEKMGPELLRIKDRHDRDFLIQPTSEEVVTDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY  MF +
Sbjct: 121 EIKSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFSMKDAYSFDRDTEGLKKSYQIMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL+   + A++G IGG  S EF V+ADTGE  +    D  D+    E
Sbjct: 181 YTRIFKRMGLQFRAVTADNGAIGGSGSQEFHVIADTGEDAIVYCPD-SDYAANLE 234



 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/198 (34%), Positives = 104/198 (52%), Gaps = 3/198 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N  + D  P+ K V    RGIEVGH+F  GT+YS  M  T+    GK   +
Sbjct: 382 PEPLVLDIRNAVVGDPSPDGKGVVDICRGIEVGHVFQLGTRYSEAMGCTYLDQQGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE  HD KGIIWP S+AP ++ +  +     +  + AC++++  
Sbjct: 442 VMGCYGIGVTRLLGAAIEQGHDEKGIIWPISMAPCEVVICPMGYEKSEAVKAACDQLHDG 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G+ FA   L+G P +V++G + + DS+VE K R     +++ L
Sbjct: 502 LLAAGVDVILDDRNERPGAMFADWGLIGAPFRVVIGDRGLVDSQVEFKGRTDAESQNIPL 561

Query: 432 EEVINYASHRFSNNRPVL 449
            ++           +  +
Sbjct: 562 TQIKEKVIAAIQTTKQSI 579


>gi|15606769|ref|NP_214149.1| threonyl-tRNA synthetase [Aquifex aeolicus VF5]
 gi|8928367|sp|O67583|SYT_AQUAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2984004|gb|AAC07549.1| threonyl-tRNA synthetase [Aquifex aeolicus VF5]
          Length = 638

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 83/437 (18%), Positives = 162/437 (37%), Gaps = 38/437 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L   T +      G+  WLP G      +   +REE  + G   + 
Sbjct: 237 EEVKKRDHRRLGKELEFFT-IDDNVGAGLILWLPRGAIYRKVLEDYLREEHLKRGYQLVY 295

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +  + LW  SG  + Y + M      +++     P +      I++S  +SY+ LP 
Sbjct: 296 TPHVGKSKLWETSGHLECYKQNMFPSMKIDEEEYYVKPMNCPFHIAIYKSRTRSYKELPL 355

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             +++   +R EL     G++R R F   DA+    TPE       +     L      G
Sbjct: 356 KLFELGTVYRYELSGVLHGLLRVRGFTQDDAHIVC-TPEQVNDVIRETLDFALSTLKDFG 414

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P     S E                   +    +     +D+     I 
Sbjct: 415 FNEFKIYLSTRPEYSIGSDE-----------------QWEVSQNALKKAIEDLGYEYEID 457

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E   A Y    DV   K+ D++    ++S    +    F    ++ +    T+ G D K 
Sbjct: 458 EGGGAFYGPKIDV---KIRDAIGRMWQLSTIQFD----FNLPERFDM----TYVGPDNKK 506

Query: 310 H-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H    +    +G++     ++   + G   IW   ++P ++ +I I        +  +K+
Sbjct: 507 HRPYMIHRALLGSIERFTGILLEHYAGLLPIW---LSPTQVMIIPIADRHH---EYAKKV 560

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L + G     D   E++ ++   A+L   P+ ++VG +   ++ V ++ +  G    
Sbjct: 561 YEFLKENGIRAEMDLREERMNAKIRDAELKKIPVILVVGDREAQNNTVSVRTKKEGNLGS 620

Query: 429 MSLEEVINYASHRFSNN 445
           M L + +++   +  N 
Sbjct: 621 MELNKFLDWIKEKIKNK 637


>gi|313887217|ref|ZP_07820913.1| threonine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923446|gb|EFR34259.1| threonine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 650

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 155/443 (34%), Gaps = 37/443 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L      +  +G+  WLP G +    +   ++  Q R G
Sbjct: 234 YLALLEEAKKRDHRKIGKELELFA-FSQRVGQGLPLWLPRGTQLRLKLEDFLKRIQKRYG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             ++  P + + +L+  SG Y  YG +  +     +  +A +  P +     +I+R    
Sbjct: 293 YQQVMTPHIGNVELYKTSGHYAKYGADSFQVITTPQEGEAFMLKPMNCPHHCEIYRLKPH 352

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +    +R E      G+ R R F   DA+ F   P+  K  + K+     
Sbjct: 353 SYRDLPVRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCR-PDQVKEEFLKVMDIIF 411

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            IF  L  ++   +                 + T  ++   S++  D    +      + 
Sbjct: 412 IIFRALDFENFEAQISLR-------------SQTDRSKYIGSEENWDRAEQAIIEACQEA 458

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    D     + D+L    ++    ++                  +
Sbjct: 459 GLPAHVEYDEAAFYGPKLDFM---VKDALGRRWQLGTIQVDYNLP--------ERFDLEY 507

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D + H    +     G+M    AV+     GK  +W           + I    +  
Sbjct: 508 TGEDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LAPDQVVILPVSERF 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++ A LS+    V  DD  E++G +    +L   P  +IVG +  +D  V ++ +
Sbjct: 562 NEYANEVAAALSEHDISVSIDDRNEKVGRKIRDNELKRIPYMLIVGEQEQADGTVSVRKQ 621

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
             G      +            +
Sbjct: 622 GEGDVGTEKISTFAERILQEIES 644


>gi|256844949|ref|ZP_05550407.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
 gi|256718508|gb|EEU32063.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
          Length = 637

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 162/443 (36%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  K+   + +   RD      +L L    + ++  G   +LP G    + +  + R+E 
Sbjct: 226 RLKKHLKLMEEAEKRDHRKLGKELELF--FLSEYGPGFPFFLPKGMIIRNVLIDLWRKEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G +++  P + + +LW  SG + +Y + M   ++ ++      P +       F+  
Sbjct: 284 EKAGYLQLETPIMLNKELWEISGHWFNYRENMYT-SEIDELEFAIKPMNCPGGVLSFKHQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     +   
Sbjct: 343 LHSYKDLPARLAELGRVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + + +L      +   + P     S E                   D    +     D
Sbjct: 402 IDKFYSKLFGFEYEIELSTKPEKAIGSQE-----------------IWDMAEAALAGALD 444

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     I     A Y    D    K+ D++    +     ++    F    ++      
Sbjct: 445 KLGRKYKINPGDGAFYGPKLDF---KIKDAIGRMWQCGTIQLD----FNLPERFD----V 493

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G DG+ H    +     G++     ++   + G   +W   V    ++L      + 
Sbjct: 494 TYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFSMWLAPVQVKVLTL------ND 547

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEI 418
            C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V + +V I
Sbjct: 548 ECIPYAKEIMDKLEELGIRAELDDRNETIGYKIREANGKYKIPMQLIIGKNEVENKEVNI 607

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  +    L E   Y    
Sbjct: 608 RRFGSKDQFSKPLNEFYTYVVDE 630


>gi|331016426|gb|EGH96482.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 544

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 121/270 (44%), Positives = 174/270 (64%), Gaps = 10/270 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +    +  D+    E  +  
Sbjct: 181 YSNVFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVF-SNGSDYAANIEKAEA- 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                   V +  A  AAT ++      ++
Sbjct: 239 --------VPREKARAAATEELRLVDTPNA 260



 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/181 (37%), Positives = 99/181 (54%), Gaps = 4/181 (2%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGQGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 E 417
           E
Sbjct: 544 E 544


>gi|325578419|ref|ZP_08148554.1| threonine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
 gi|325160155|gb|EGC72284.1| threonine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
          Length = 643

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 142/445 (31%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 EYDYQEVKGPFMMDRVLWEKTGHWQNY-GDLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G ++I ++  + P                      + D  D            
Sbjct: 405 YDIYSTFGFQNIQVKLSTRPEKR-----------------IGADDMWDRAEAGLAAALAH 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I     A Y    +     L D L    +     ++               +A+
Sbjct: 448 NGLEYEIQAGEGAFYGPKIEF---ALRDCLDREWQCGTIQLDFALPGRL--------NAS 496

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +    +G++     +I   + G    W   V    +++         
Sbjct: 497 YVAEDNDRRTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPVQAVVMNIT------DS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+  +LS  G  V  D   E++G +     L   P  ++ G K +++ KV ++ 
Sbjct: 551 QADYVQKVVKQLSDAGLRVKADLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVAVRT 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R        ++EE       +    
Sbjct: 611 RKGADLGTFTIEEFAEILKSQVRQR 635


>gi|213969174|ref|ZP_03397313.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|301384830|ref|ZP_07233248.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato Max13]
 gi|302064183|ref|ZP_07255724.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato K40]
 gi|302130620|ref|ZP_07256610.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213926172|gb|EEB59728.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
          Length = 571

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 121/270 (44%), Positives = 174/270 (64%), Gaps = 10/270 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +    +  D+    E  +  
Sbjct: 181 YSNVFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVF-SNGSDYAANIEKAEA- 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                   V +  A  AAT ++      ++
Sbjct: 239 --------VPREKARAAATEELRLVDTPNA 260



 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 111/207 (53%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGQGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYAELTTAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRSLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   R  
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGRVK 570


>gi|295399847|ref|ZP_06809828.1| prolyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978250|gb|EFG53847.1| prolyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 567

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 122/235 (51%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G I Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQSFIPTLREVPADAEVKSHQLLLRAGFIRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++    GPTHEE++T + R 
Sbjct: 61  MNRAGAVELLMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFALGPTHEEMITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ+KFRDE RPRFG++R REF+MKDAYSF  + E    +YNKM+ +
Sbjct: 121 EVKSYKRLPLTLYQIQVKFRDEKRPRFGLLRGREFIMKDAYSFHTSQESLDETYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL    + A+SG IGG  +HEF+VL++ GE  +  S    D+    E
Sbjct: 181 YSNIFRRCGLNFRAVIADSGAIGGKDTHEFMVLSEIGEDTIAYSD-ASDYAANIE 234



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+ K      RGIEVGH+F  GT+YS  ++AT+   +G+   + 
Sbjct: 378 VSEYADLRFIQEGDPSPDGKGTIRFARGIEVGHVFKLGTRYSEALNATYLDENGRSQTMI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R+VAA+ E   D  G++WP +VAPF + LI   A  +  R   ++ Y +L 
Sbjct: 438 MGCYGIGVSRLVAAIAEQFADENGLVWPVAVAPFHVHLITANAKSEEQRQLADEWYEKLR 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V +DD  E+ G +FA +DL+G P++V VG +   +  VE+K R TG   ++ + E
Sbjct: 498 QAGLEVLYDDRPERAGVKFADSDLIGIPVRVTVGKR-AGEGVVEVKVRQTGESVEVPVHE 556

Query: 434 VINYASHRFS 443
           +I+       
Sbjct: 557 LIDTIQRLLQ 566


>gi|217962055|ref|YP_002340625.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|222098038|ref|YP_002532095.1| threonyl-tRNA synthetase [Bacillus cereus Q1]
 gi|229141301|ref|ZP_04269839.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|217064460|gb|ACJ78710.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|221242096|gb|ACM14806.1| threonyl-tRNA synthetase [Bacillus cereus Q1]
 gi|228642082|gb|EEK98375.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
          Length = 645

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 169/433 (39%), Gaps = 30/433 (6%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 237 LRMLEEAKERDHRKLGKELKLFTN-SQKVGQGLPLWLPKGATIRRIIERYIVDKEASLGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 296 DHVYTPVLGSRELYETSGHWNHYRDGMFPSMEMDNEELVLRPMNCPHHMMVYKNDIHSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 356 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             GL++   R             +   ADT   + +   +  +          D++    
Sbjct: 416 DFGLENYSFRLS-----------YRDPADTK--KYYADDEMWEKAQGMLKEAMDEMGLDY 462

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV   ++  +L +++ +S   ++    F    ++      ++ G D
Sbjct: 463 YEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELSYVGED 511

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK H   +     G +  +   +    +     +P  +AP ++ +I +    QV  D  +
Sbjct: 512 GKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSP--QVHLDYAK 567

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++       
Sbjct: 568 KVQDELRRAGMRVELDTREEKIGYKIREAQMQKIPYMLVVGDNEVTENGVNVRKYGEQKS 627

Query: 427 EDMSLEEVINYAS 439
           E ++L+  ++   
Sbjct: 628 ETIALDAFVDMIK 640


>gi|83309439|ref|YP_419703.1| threonyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
 gi|123740560|sp|Q2WAI1|SYT_MAGMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|82944280|dbj|BAE49144.1| Threonyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
          Length = 638

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 147/438 (33%), Gaps = 40/438 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      ++ L      + + G   W   G      V + +R       
Sbjct: 233 YLHMLEEAEKRDHRRLGREMELF--HQQEEAAGSVFWHKKGWTLYRAVESYMRRRLEANN 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG  D + + M  +  ++++ +   P +      IFR  IKSY
Sbjct: 291 YEEVKTPQLVDFSLWEASGHADKFSESMFTIKTQDERHLAVKPMNCPCHVQIFRQGIKSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G+MR R F   DA+ F    + +  +          +
Sbjct: 351 RDLPLRMAEFGSCHRYEPSGALHGIMRVRAFTQDDAHIFCTEDQITSETIAF-CQLLKEV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++    P     S E                   D    +          
Sbjct: 410 YTDFGFTDVRVKFSDRPAKRAGSDE-----------------TWDKAESALLEASKAAGL 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D++  + +     ++    F    +    + A +  
Sbjct: 453 ETVLNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVD----FVLPER----LDAAYVA 501

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG K   V +    +G+      ++  +  G+  +W         +++          D
Sbjct: 502 EDGAKKRPVMLHRAILGSFERFLGILIENFAGRFPLWLAPTQVVVATIV------SEADD 555

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A L   G  V  D   E+I  +     +   P+ ++VG +     +V I+   +
Sbjct: 556 FAREVEATLKAAGLRVELDLRNEKINYKVREHSVAKVPVMLVVGKREAESRQVAIRRLGS 615

Query: 424 GIREDMSLEEVINYASHR 441
             +E ++L++ +   +  
Sbjct: 616 QNQEIVALDQAVATLAAE 633


>gi|319744717|gb|EFV97060.1| threonine--tRNA ligase [Streptococcus agalactiae ATCC 13813]
          Length = 647

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 164/449 (36%), Gaps = 38/449 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   +E   RD      +L L   M++ +  +G+  WLP G      +   I +++ 
Sbjct: 227 KAYLKRREEAKERDHRKLGKELDLF--MVNPEVGQGLPFWLPNGATIRRELERYIVDKEI 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P + S + +  SG +D Y ++M    D  D +  +  P +     ++++ H
Sbjct: 285 ASGYQHVYTPPMASVEFYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIEVYKHH 344

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR LP    ++ +  R E      G+ R RE  + DA+ F  TPE  K  + K    
Sbjct: 345 VHSYRELPIRIAELGMMHRYEKSGALTGLQRVREMTLNDAHIFV-TPEQIKDEFLKALNL 403

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+    L     R            +     D  E          +          D
Sbjct: 404 IAEIYEDFNLTDYRFRLS-----YRDPEDKHKYYDNDEM--------WENAQAMLKEAMD 450

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D        E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 451 DFGLDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 499

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GADG++H    +   GI  M    A++  ++ G    W          +  I   ++
Sbjct: 500 KYIGADGEEHRPIMIHRGGISTMERFTAILIETYKGAFPTWLA-----PQQVSVIPISNE 554

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L   G     DD  E++  +   A     P Q+IVG K + +  V ++
Sbjct: 555 AHIDYAWEVARVLKDRGIRAEVDDRNEKMQYKIRAAQTQKIPYQLIVGDKEMEEKGVNVR 614

Query: 420 HRLTGIREDMSLEEVINYASHRF-SNNRP 447
              +   E  S+EE +          +RP
Sbjct: 615 RYGSKATETKSIEEFVESILADIARKSRP 643


>gi|85059898|ref|YP_455600.1| prolyl-tRNA synthetase [Sodalis glossinidius str. 'morsitans']
 gi|114152253|sp|Q2NRN0|SYP_SODGM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|84780418|dbj|BAE75195.1| prolyl-tRNA synthase [Sodalis glossinidius str. 'morsitans']
          Length = 574

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+YSWLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKEVPADAEVVSHQLMLRAGMIRKLASGLYSWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE+S+P +Q ADLW ESGR+  YG E+LR  DR  +A + GPTHEEV+TD+ R+
Sbjct: 61  MDNAGAIEVSMPVVQPADLWQESGRWVQYGPELLRFTDRGARAFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTSQASLQATYDAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R+GL+   ++A++G IGG  SHEF VLA +GE  +       D+    E
Sbjct: 181 YSAIFTRMGLEFRAVQADTGSIGGSASHEFQVLAGSGEDDIVF-STASDYAANIE 234



 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 68/195 (34%), Positives = 110/195 (56%), Gaps = 3/195 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+      D  P+        RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 380 PLPQVADLRKVVEGDISPDGNGTLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQTL 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYAR 371
            MG YGIG  RVV A IE +HD +GI+WP+++APF ++++ +  H     ++  E +Y +
Sbjct: 440 TMGCYGIGITRVVVAAIEQNHDDRGILWPETLAPFNVAILPMNMHKSFRVKEVAEDLYQQ 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P Q+++G + +   ++E K+R +G +  + L
Sbjct: 500 LQARGIDVLLDDRKERPGVMFADMELIGVPHQLVIGDRNLDTEEIEYKNRRSGEKRMIKL 559

Query: 432 EEVINYASHRFSNNR 446
             ++++     +  +
Sbjct: 560 SAIVDFLVSEIATAK 574


>gi|251795037|ref|YP_003009768.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247542663|gb|ACS99681.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 637

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 153/442 (34%), Gaps = 39/442 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L   M  + + G+  +LP G      +    RE  NR  
Sbjct: 234 YLYQLEEAKKRDHRKLGKELELF--MFSEEAPGMPFYLPKGMAIRTALENFSRELLNRND 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  +W +SG ++ Y   M      ++      P +      IF++ ++SY
Sbjct: 292 YEEVRTPFMMNKRMWEQSGHWEHYKDNM-YFTKVDESEFALKPMNCPGHMLIFKNSLRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R EL     G+MR R F   DA+ F    +  +     M  S +  
Sbjct: 351 RELPVRLAEFGQVHRHELSGALGGMMRVRTFCQDDAHLFVRPDQIEEEIGKVM--SLIGE 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +++   +  +   + P     S E                   D    S     D    
Sbjct: 409 VYKVFGFAYTVELSTRPADYMGSDE-----------------LWDEAEQSLKNVLDAQGV 451

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H   + D+L  + +     ++    F    K+      ++ G
Sbjct: 452 NYRINEGDGAFYGPKIDFH---IVDALKRSWQCGTIQLD----FQMPEKFD----LSYIG 500

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            D K     +    I     +   +    +     +P  +AP +  +I +  H+    D 
Sbjct: 501 EDNKKQRPVVIHRAI--YGSLDRFLGILIEHYSGAFPIWLAPVQAKVIPVSEHE---LDY 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++ ++L + G  V  D   E++G++   + L   P  ++VG        V ++ R   
Sbjct: 556 ALQVKSQLIQAGIRVEVDARSEKLGNKIRKSQLEKVPYMLVVGKNERLSGSVSVRKRGEA 615

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                 LEE+       F   R
Sbjct: 616 EGSVQQLEEIAGAIVEEFRKRR 637


>gi|167907142|ref|ZP_02494347.1| threonyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
          Length = 670

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/437 (16%), Positives = 144/437 (32%), Gaps = 39/437 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L      + + G   W P G      + A +R  Q   G
Sbjct: 232 YIQRMEEAEKRDHRKLGRELDLF--HFQEDAPGAVFWHPRGWAVFQELIAYMRRRQQDAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E++ P +    LW  SG + +Y   M      + +A+   P +      ++R  +KSY
Sbjct: 290 YVEVNSPDVMDRSLWEISGHWQNYRDHMFTTETEDGRALALKPMNCPGSALLYRHGLKSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G++R R F   DA+ +  TP+       ++    L I
Sbjct: 350 RDLPIRMGEFGKVHRYEPSGSLHGLLRVRHFTQDDAHIYC-TPQQMDAECREVVTLVLDI 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G   + ++  + P                      +    D    +     + +  
Sbjct: 409 YRQFGFDEVRIKLSTRPENR-----------------MGTDATWDQLEGTLVQALEGMGL 451

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D++  + +     +++     FG          +  
Sbjct: 452 QYHLKPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVDMNLPERFG--------IEYVD 500

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+      +     G++     ++   H G+  +W   +    +S+       +    
Sbjct: 501 EDGQRKRPVMLHRALFGSLERFTGILIEHHAGRLPVWLAPLQAIVLSIT------EAHGA 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L   G     D   E IG +     L   P  ++VG+K      V I+ R  
Sbjct: 555 YAQDVARLLRGAGLRAEADIRNETIGYKIREQTLQRIPFLLVVGAKERDAGAVAIRTRNG 614

Query: 424 GIREDMSLEEVINYASH 440
                + L + +     
Sbjct: 615 DDLGVLPLTQAVARLLQ 631


>gi|194290784|ref|YP_002006691.1| prolyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|226699135|sp|B3R894|SYP_CUPTR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|193224619|emb|CAQ70630.1| prolyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 573

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 125/275 (45%), Positives = 172/275 (62%), Gaps = 5/275 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYNYMPIGLRVIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+S+P +Q A+LW E+GR+D  G E+LRL DR+++     PT EEV+TDI RS
Sbjct: 61  MNRAGAVELSMPVIQPAELWQETGRWDKMGPELLRLKDRHERDFAVQPTSEEVVTDIARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   +G + SY  M+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDTDGLRKSYENMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD----FPIPSEN 236
           Y+RIF R GL+   + A++G IGG  SHEF V+A+TGE  +                +  
Sbjct: 181 YVRIFRRFGLEFRAVAADNGAIGGSGSHEFHVIAETGEDAIVYCPTSAYAANMEAAEALP 240

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +       +V+ +T P     +   E L   L
Sbjct: 241 LVAERAAPTQDLVKTFT-PEKVKCEQVAEFLNIPL 274



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/193 (36%), Positives = 108/193 (55%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ +      RGIEVGH+F  GT+YS  M+ATF   +GK   +
Sbjct: 381 PEPIVADLRNVVAGDASPDGQGTLEICRGIEVGHVFMLGTRYSESMNATFLDENGKTQPM 440

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  R++ A IE + D +GIIWP ++APF + +  +     +  +   ++I+A 
Sbjct: 441 QMGCYGIGITRILGAAIEQNFDERGIIWPAAIAPFAVVICPVGYDRSEAVKAEADRIHAE 500

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G  FA  +L+G P +V+VG + + + KVE + R       +S+
Sbjct: 501 LLAAGVDVILDDRGERPGVMFADWELIGVPHRVVVGDRGLKEGKVEYQGRRDAQATAVSV 560

Query: 432 EEVINYASHRFSN 444
            EV+ +     +N
Sbjct: 561 AEVVGHVRSLLAN 573


>gi|295135444|ref|YP_003586120.1| threonyl-tRNA synthetase [Zunongwangia profunda SM-A87]
 gi|294983459|gb|ADF53924.1| threonyl-tRNA synthetase [Zunongwangia profunda SM-A87]
          Length = 648

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 85/436 (19%), Positives = 156/436 (35%), Gaps = 38/436 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T    +  +G+  WLP G    + +   +++ Q + G   +  P
Sbjct: 238 AKKRDHRKLGKELELFT-FSQKVGQGLPLWLPKGAALRERLENFLKKAQKKAGYEMVVSP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG Y  YG++  +        +  +  P +     +++ S   SYR+LP 
Sbjct: 297 HIGHKELYVTSGHYAKYGEDSFQPIKTPHEGEEFLLKPMNCPHHCEMYNSQSWSYRDLPK 356

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +    +R E      G+ R R F   DA+ F  TPE     + K+    L +F  LG
Sbjct: 357 RFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPEQLDEEFKKVIDLTLYVFDSLG 415

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            ++   +                  D    + +   D +     +   +      LN ++
Sbjct: 416 FENFTAQVSLR--------------DPENKEKYIGSDDVWEKAENAIINAAKEKGLNYVI 461

Query: 250 E-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           E    A Y    D     + D+L  + ++    ++                 T+KG+D +
Sbjct: 462 ETGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERFDLTYKGSDNE 510

Query: 309 DHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            H    +     G+M    A++     G   +W        +SL       +      +K
Sbjct: 511 SHRPVMIHRAPFGSMERFIAILLEHTAGNFPLWLMPEQAIILSL------SEKYEKYSQK 564

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + + L         D+  E IG +   A++  FP  +IVG +   D  V ++    G   
Sbjct: 565 VLSLLENHEIRAVLDNRNETIGKKIREAEVQKFPYMLIVGEQEAKDGTVSVRKHGEGDIG 624

Query: 428 DMSLEEVINYASHRFS 443
            M +EE      +   
Sbjct: 625 TMPVEEFAQIIKNEIE 640


>gi|23016433|ref|ZP_00056189.1| COG0441: Threonyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 621

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 147/438 (33%), Gaps = 40/438 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      ++ L      + + G   W   G      V + +R       
Sbjct: 216 YLHMLEEAEKRDHRRLGREMELF--HQQEEAAGSVFWHKKGWTLYRAVESYMRRRLEAND 273

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG  D + + M  +  ++++ +   P +      IFR  IKSY
Sbjct: 274 YQEVKTPQLVDFSLWEASGHADKFSESMFTIRTQDERHLAVKPMNCPCHVQIFRQGIKSY 333

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G+MR R F   DA+ F    + +  +          +
Sbjct: 334 RDLPLRMAEFGSCHRYEPSGALHGIMRVRAFTQDDAHIFCTEDQITSETIAF-CQLLKEV 392

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++    P     S E                   D    +          
Sbjct: 393 YTDFGFTDVRVKFSDRPAKRAGSDE-----------------TWDKAESALLEASKAAGL 435

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D++  + +     ++    F    +    + A +  
Sbjct: 436 ETVLNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVD----FVLPER----LDAAYVA 484

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG K   V +    +G+      ++  +  G+  +W   V     +++           
Sbjct: 485 EDGAKKRPVMLHRAILGSFERFLGILIENFAGRFPVWLAPVQVVVATIV------SEADV 538

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A L   G  V  D   E+I  +     +   P+ ++VG +     +V I+   +
Sbjct: 539 FATEVAATLKAAGIRVELDLRNEKINYKVREHSVAKVPVMLVVGKREAESRQVAIRRLGS 598

Query: 424 GIREDMSLEEVINYASHR 441
             +E ++L++ +   +  
Sbjct: 599 QNQEIVALDQAVATLAAE 616


>gi|315635289|ref|ZP_07890566.1| proline--tRNA ligase [Aggregatibacter segnis ATCC 33393]
 gi|315476035|gb|EFU66790.1| proline--tRNA ligase [Aggregatibacter segnis ATCC 33393]
          Length = 571

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 126/276 (45%), Positives = 171/276 (61%), Gaps = 4/276 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P +A I SH+LMLR GMI   + G+Y+W+P G + L  V  IIREE
Sbjct: 1   MRTSKYLLSTLKETPAEAAIVSHQLMLRAGMIRPLASGLYNWMPTGWRVLQKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR +++ + GPT+EE +TD+ R 
Sbjct: 61  MNKSGAIEIKMPVVQPAELWQESGRWDQYGPELLRFTDRGERSFVIGPTNEEAITDLMRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   Y IQ KFRDE+RPRFGVMRSREF+MKDAYSF +  E  + +Y  M+ +
Sbjct: 121 EVTSYRQLPLNLYHIQTKFRDEVRPRFGVMRSREFIMKDAYSFHMDKESLQQTYEVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP---SENT 237
           Y  IF RLGL    ++A++G IGG  SHEF VLA++GE  V       D+      +E  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLANSGEDDVIF-STESDYAANIELAEAV 239

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
              +  +    +E    P A T     E+    + +
Sbjct: 240 AVGERAAPTKAMELVDTPNAKTIADLVEQFNQPIEK 275



 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNINWERDVALPKVADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGDKYSNAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
           +AT +G DG+   V MG YGIG  RVVAA IE  HD +  I   D++APF ++++ +   
Sbjct: 424 NATVQGEDGRPTVVTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDAMAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G +V +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQAFAEELYRTLLAQGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R +G ++ ++  ++I++   +  
Sbjct: 544 EYKNRRSGEKQMIAKAQLIDFLKSQIK 570


>gi|56419792|ref|YP_147110.1| prolyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|81819753|sp|Q5L0J4|SYP_GEOKA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56379634|dbj|BAD75542.1| proline-tRNA synthetase [Geobacillus kaustophilus HTA426]
          Length = 567

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 121/235 (51%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G I Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQAFIPTLREVPADAEVKSHQLLLRAGFIRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++    GPTHEE++T I R 
Sbjct: 61  MNRIGAMELFMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFALGPTHEEMITAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +YN M+ +
Sbjct: 121 EVKTYKRLPLVLYQIQTKFRDEKRPRFGLLRGREFMMKDAYSFHTSKESLDETYNNMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL    + A+SG IGG  +HEF+VL+D GE  +  S    D+    E
Sbjct: 181 YANIFRRCGLNFRAVIADSGAIGGKDTHEFMVLSDIGEDTIAYSD-ASDYAANIE 234



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 73/197 (37%), Positives = 107/197 (54%), Gaps = 3/197 (1%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADG 307
                  +  +D+   K  D  P+ K      RGIEVGH+F  GTKYS  M+A +   +G
Sbjct: 372 PGRDFAVSQYADLRFVKEGDPSPDGKGTIRFARGIEVGHVFKLGTKYSEAMNAVYLDENG 431

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +   + MG YGIG  R+VAA+ E   D  G++WP SVAPF I L+   A     R   E+
Sbjct: 432 QTQTMIMGCYGIGVSRLVAAIAEQFADEHGLVWPASVAPFHIHLLTANAKSDEQRALAEE 491

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            Y +L + G +V +DD  E+ G +FA +DL+G PL+V VG +   +  VE+K R TG   
Sbjct: 492 WYEKLGQAGFEVLYDDRPERAGVKFADSDLIGIPLRVTVGKR-AGEGVVEVKVRKTGETF 550

Query: 428 DMSLEEVINYASHRFSN 444
           D+ + E+++ A     +
Sbjct: 551 DVPVSELVDTARRLLQS 567


>gi|261419457|ref|YP_003253139.1| prolyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|319766272|ref|YP_004131773.1| prolyl-tRNA synthetase [Geobacillus sp. Y412MC52]
 gi|261375914|gb|ACX78657.1| prolyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|317111138|gb|ADU93630.1| prolyl-tRNA synthetase [Geobacillus sp. Y412MC52]
          Length = 567

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 121/235 (51%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G I Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQAFIPTLREVPADAEVKSHQLLLRAGFIRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++    GPTHEE++T I R 
Sbjct: 61  MNRIGAMELFMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFALGPTHEEMITAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +YN M+ +
Sbjct: 121 EVKTYKRLPLVLYQIQTKFRDEKRPRFGLLRGREFMMKDAYSFHTSKESLDETYNNMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL    + A+SG IGG  +HEF+VL+D GE  +  S    D+    E
Sbjct: 181 YANIFRRCGLNFRAVIADSGAIGGKDTHEFMVLSDIGEDTIAYSD-ASDYAANIE 234



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 73/197 (37%), Positives = 107/197 (54%), Gaps = 3/197 (1%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADG 307
                  +  +D+   K  D  P+ K      RGIEVGH+F  GTKYS  M+A +   +G
Sbjct: 372 PGRDFAVSQYADLRFVKEGDPSPDGKGTIRFARGIEVGHVFKLGTKYSEAMNAVYLDENG 431

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +   + MG YGIG  R+VAA+ E   D  G++WP SVAPF I L+   A     R   E+
Sbjct: 432 QTQTMIMGCYGIGVSRLVAAIAEQFADEHGLVWPASVAPFHIHLLTANAKSDEQRALAEE 491

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            Y +L + G +V +DD  E+ G +FA +DL+G PL+V VG +   +  VE+K R TG   
Sbjct: 492 WYEKLGQAGFEVLYDDRPERAGVKFADSDLIGIPLRVTVGKR-AGEGVVEVKVRKTGETF 550

Query: 428 DMSLEEVINYASHRFSN 444
           D+ + E+++ A     +
Sbjct: 551 DVPVSELVDTARRLLQS 567


>gi|256422752|ref|YP_003123405.1| threonyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
 gi|256037660|gb|ACU61204.1| threonyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
          Length = 646

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 87/448 (19%), Positives = 170/448 (37%), Gaps = 38/448 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L T    +   G+  WLP G    + + + +++ Q  +
Sbjct: 230 EYLHLVEEAKKRDHRKLGKELELFT-FSEKVGLGLPLWLPKGAMLRERLQSFLQKAQIES 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G + +  P + + +L++ SG Y+ YGK+  +        +  +  P +     +I++S  
Sbjct: 289 GYMPVVTPHIGNKNLYITSGHYEKYGKDSFQPIHTPEEGEEFMLKPMNCPHHCEIYKSSP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + K+    
Sbjct: 349 KSYKDLPVRFAEFGTVYRYEQHGELHGLTRVRGFTQDDAHLFCR-PDQVKEEFCKVIDLV 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L +F  L       +                  D  +   +   D           +   
Sbjct: 408 LYVFQSLNFTDYTAQISLR--------------DQEDRAKYIGSDENWNLAEQAIIESAA 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L ++VE    A Y    D     + D+L    ++    ++                 
Sbjct: 454 EKGLKTVVEYGEAAFYGPKLDFM---VKDALGRKWQLGTIQVDYNLP--------ERFEL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GAD + H    +     G++    AV+    +  G  +P  + P ++ ++ I   +Q
Sbjct: 503 EYVGADNQKHRPVMIHRAPFGSLERFIAVLI---EHCGGKFPLWLTPTQVKILPISDKNQ 559

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  EK+   L  V      DD  E+IG +    +L   P  +++G K  ++SKV ++
Sbjct: 560 ---EYAEKVAELLKNVEIRAEIDDRSEKIGKKIRETELAKIPYMLVIGEKEAAESKVAVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRP 447
            +  G    M +++ I        + +P
Sbjct: 617 RQAKGDLGAMDIDQFIALVKEEVVSRKP 644


>gi|292489201|ref|YP_003532088.1| prolyl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|292898564|ref|YP_003537933.1| prolyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291198412|emb|CBJ45519.1| prolyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291554635|emb|CBA22316.1| Prolyl-tRNA synthetase [Erwinia amylovora CFBP1430]
          Length = 572

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 120/235 (51%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LRL DR+D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRLVDRSDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M  +
Sbjct: 121 ELSSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQGSLQETYDAMHRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y + F R+GL    ++A++G IGG+ SHEF VLA +GE  +       D+    E
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF-SSESDYAANIE 234



 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 108/192 (56%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M A+ +G DG++  +
Sbjct: 380 PLPRIADIRNVVEGDASPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKASVQGEDGRNQIL 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIW  ++APF+++++ +        ++  E +Y +
Sbjct: 440 TMGCYGIGITRIVAAAIEQNHDERGIIWSPALAPFQVAILPMNMQKSFRVKELAEALYHQ 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  ++VG + +   +VE K R  G +  +  
Sbjct: 500 LRAKGIDVILDDRKERPGVMFADMELIGVPHTIVVGERHLDSEEVEYKSRRAGEKRMIKT 559

Query: 432 EEVINYASHRFS 443
            E+I++     +
Sbjct: 560 NEIIDFLVEELA 571


>gi|171057265|ref|YP_001789614.1| prolyl-tRNA synthetase [Leptothrix cholodnii SP-6]
 gi|226701306|sp|B1XYW5|SYP_LEPCP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|170774710|gb|ACB32849.1| prolyl-tRNA synthetase [Leptothrix cholodnii SP-6]
          Length = 581

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 121/235 (51%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SH+LM+R GMI +   GIY+++P+G + +  V AIIREE
Sbjct: 1   MKASQFFIATLKEAPADAEVKSHQLMMRAGMIKRLGAGIYNYMPMGLRVIRKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR+D  G E+LR+ DR+D+  I  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELLMPVVQPAELWQETGRFDKMGPELLRVKDRHDRDFIIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD     +  SY+ MF +
Sbjct: 121 ELRSYKQLPKNFYHIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAASAARSYDAMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL+   + A++G IGGDLSHEF V+ADTGE  +       D+    E
Sbjct: 181 YKRIFDRFGLQYRAVAADTGAIGGDLSHEFQVIADTGEDAIVYCPT-SDYAANIE 234



 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 3/190 (1%)

Query: 258 ATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A +D+ N    D  P+ + V    RGIEVGH+F+ GTKYS  M+AT+   +GK  +++MG
Sbjct: 392 AVADIRNVVEGDPSPDGQGVLAIQRGIEVGHVFFLGTKYSKAMNATYLDENGKPQFMEMG 451

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSK 374
            YGIG  R++ A IE  HD +GI+WPD++APF + +  I        + A + ++  L  
Sbjct: 452 CYGIGVTRILGAAIEQKHDARGILWPDAIAPFTVVVCPIGYDRSAEVKAAADALHDELQA 511

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD GE+ G+ FA  +L+G P +V++  + +   +VE + R       +   EV
Sbjct: 512 AGIDVMLDDRGERPGAMFADWELIGVPHRVVISDRGLKAGQVEYQGRCDEAASTVPAAEV 571

Query: 435 INYASHRFSN 444
             +   R  +
Sbjct: 572 AAFVKGRLRS 581


>gi|330807862|ref|YP_004352324.1| proline--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375970|gb|AEA67320.1| Proline--tRNA ligase (proline tRNA synthetase) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 571

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 114/237 (48%), Positives = 160/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + +  V AI+REE
Sbjct: 1   MRTSQYLLATQKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLRVMRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G++E+ +P  Q A+LW ESGR++ YG E+LR+ DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGSLEVLMPGTQPAELWQESGRWEEYGPELLRIKDRHGRDFCAGPTHEEVITDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD+YSF       + +Y++M  +
Sbjct: 121 ELSSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFIMKDSYSFHADLASLQITYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +    +  D+    E  
Sbjct: 181 YCNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVF-SNGSDYAANIEKA 236



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGNKYSKAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   ++MG YGIG  RVVAA IE ++D KGIIW D++APF+I+L+ ++   
Sbjct: 424 KCEVLGENGKPVTLEMGCYGIGVSRVVAAAIEQNNDEKGIIWSDTLAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            + R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DLVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + + + +V+++   R  
Sbjct: 544 EYKSRTEAEPQALPVADVLSFLQARIR 570


>gi|313159213|gb|EFR58586.1| threonine--tRNA ligase [Alistipes sp. HGB5]
          Length = 650

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 85/451 (18%), Positives = 160/451 (35%), Gaps = 42/451 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD       L L      +  +G+  WLP G    D +   +R  Q   
Sbjct: 229 EYLVMMEEAKKRDHRKLGKDLELF-CFSQRVGQGLPLWLPKGAALRDRLEQFLRNVQKEY 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN--DKAMIYGPTHEEVMTDIFRSHI 122
           G  ++  P + + +L+V SG Y  YGK+  +        +  +  P +     +I+RS  
Sbjct: 288 GYQQVITPHIGNKELYVTSGHYAKYGKDSFQPIHTPIEGEEYLLKPMNCPHHCEIYRSKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP    +    +R E      G+ R R F   DA+ F    +  +  + ++    
Sbjct: 348 RSYKELPVRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFVRPDQLLEE-FERVIDIV 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L IF  L   +   +                  D    + +   D       S      +
Sbjct: 407 LYIFKTLKFDNYTAQISLR--------------DPNNKEKYIGSDENWEKAESAIMQAAE 452

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              LN++VE    A Y    D     + D++    ++    ++                 
Sbjct: 453 EKGLNTVVEYGEAAFYGPKLDFM---VKDAIGRKWQLGTIQVDYNLP--------ERFDL 501

Query: 301 TFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+KG  D     + +     G+M    AV+     GK  +W           + +    +
Sbjct: 502 TYKGADDKLHRPIMIHRAPFGSMERFVAVLLEHTGGKFPLW------LSPQQVVVLPISE 555

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  +++   L++       DD  E+IG +    +L   P  +IVG K  ++  V ++
Sbjct: 556 KFNDYAQQVAEYLNRSDVRTEVDDRNEKIGRKIRDNELKRIPYLLIVGEKEEAEGLVSVR 615

Query: 420 HRLTGIREDMSLEEVINYA----SHRFSNNR 446
            +  G +  M+LE   ++           N+
Sbjct: 616 AQGEGDKGQMTLEGFRDFIAGLVKEEIEANK 646


>gi|312879874|ref|ZP_07739674.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Aminomonas
           paucivorans DSM 12260]
 gi|310783165|gb|EFQ23563.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Aminomonas
           paucivorans DSM 12260]
          Length = 631

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 137/439 (31%), Gaps = 41/439 (9%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +L L +  +   + G   + P G   L  +    + E  R G 
Sbjct: 229 LKRLEEAKQRDHRKLGRELDLFS--LQPEAPGFPFFHPKGMVVLGELVNFWKREHQRRGY 286

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M      +++     P +      +F+S  +SYR
Sbjct: 287 CEIRTPLILDRALWERSGHWDHYRDNM-YFTTIDERPFAIKPMNCPGGILVFKSSTRSYR 345

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++    R E      G+MR R F   DA+ +    + ++     +      ++
Sbjct: 346 DLPLRMGELGTVHRHERSGVLHGLMRVRCFTQDDAHLYCTPDQVAQE-IAGVIDLMRYVY 404

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             +      +   + P                           +          +   + 
Sbjct: 405 KDVFGFPYRVELSTRPEN-----------------YMGELSLWNLAEQKLQEALEATGTP 447

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             +     A Y    D H E              R  + G I     +        + G 
Sbjct: 448 YKVNPGDGAFYGPKIDFHLED----------CIGRTWQCGTI-QLDFQMPEKFDVAYIGP 496

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG +H    +     G++     ++   + G    W   V    + +             
Sbjct: 497 DGAEHRPVMLHRTVFGSLERFLGILIEHYAGAFPYWLAPVQAKILPVST------DLLPY 550

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++   L   G     D   E++G +   A L   P  +++G +      V ++ R+ G
Sbjct: 551 AREVEGILQSWGVRTETDTREEKLGRKIRDAQLSKVPYMLVLGGREAESRTVAVRERVRG 610

Query: 425 IREDMSLEEVINYASHRFS 443
               +SLE +       ++
Sbjct: 611 DLGSLSLEALKEMLEGEYA 629


>gi|88803834|ref|ZP_01119357.1| threonyl-tRNA synthetase [Polaribacter irgensii 23-P]
 gi|88780362|gb|EAR11544.1| threonyl-tRNA synthetase [Polaribacter irgensii 23-P]
          Length = 646

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 88/440 (20%), Positives = 162/440 (36%), Gaps = 37/440 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T    +   G+  WLP G      +   +++ Q + G
Sbjct: 231 YLALLEEAKQRDHRKLGRELELFT-FSQKVGAGLPLWLPKGAALRGRLEDFLKKAQKKAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +  P +   +L+V SG Y+ YG +  +     + D+  +  P +     +++     
Sbjct: 290 YEMVMTPHIGQKELYVTSGHYEKYGADSFQSIKTPKMDEEFLLKPMNCPHHCEVYNFKPY 349

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP  F +    +R E      G+ R R F   DA+ F  TPE     +  +    L
Sbjct: 350 SYKDLPKRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPEQLDQEFKDVIDLVL 408

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  LG +    +     I    + E          +     +  +    +  +   D 
Sbjct: 409 YVFSSLGFEDFTAQVS---IRDKNTPE----------KYIGDVETWEIAENAIISAATDK 455

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                + E   A Y    D     + D+L  + ++    ++                 T+
Sbjct: 456 GLSFVVEEGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------KRFDLTY 504

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           KGAD + H    +     G+M    AV+    +  G  +P  + P ++ L+ I       
Sbjct: 505 KGADNQLHRPVMIHRAPFGSMERFIAVLL---EHTGGNFPLWLTPDQVILLPISDK---Y 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   EK+   L         D+  E+ G +   A++   P  VIVG K   +  V ++  
Sbjct: 559 QKYSEKVLESLENSEIRALADNRNEKTGRKIRDAEVSKTPYMVIVGEKEEQEGTVSVRKH 618

Query: 422 LTGIREDMSLEEVINYASHR 441
             G     ++EE I+     
Sbjct: 619 GEGDIGTFTIEEFISLIKTE 638


>gi|307298932|ref|ZP_07578734.1| threonyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915357|gb|EFN45742.1| threonyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 648

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 87/439 (19%), Positives = 163/439 (37%), Gaps = 39/439 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +++E   RD       L L T + ++++ G+  +LP G + L+ +    RE+    G
Sbjct: 238 YLRMIEEAKKRDHRKLGPALGLFT-INYEYAPGMPVFLPKGTEMLNQLLQFSREKHVEDG 296

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + S  LW  SG +D Y   M    ++ D+     P +      +++S   SY
Sbjct: 297 YREVSTPQIMSDALWRTSGHWDHYRDNM-YFTEKEDQQFAVKPMNCPGHIIVYKSSSVSY 355

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP   ++     R E      G+ R R F+  DA+ F    +  +             
Sbjct: 356 RDLPMKLFEFGKVHRYERSGVLHGLFRVRGFVQDDAHIFCTREQIQQEI----------- 404

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              +G+     +     I    + E+     T         +  D    +          
Sbjct: 405 ---MGVIDFVQK-----IYSPFNFEYRAELSTRPEDYMGEVELWDIATKALEDSLLAKKM 456

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   + DSL    + +   ++      FG KY  P +  ++ 
Sbjct: 457 EFKVNEGDGAFYGPKIDYH---IKDSLGREWQCATIQLDFMMPERFGIKYVGPDNEEYQ- 512

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                  V +     G++     ++    +     +P  +AP ++S+I I        + 
Sbjct: 513 ------PVMIHRAIFGSVERFMGILI---EHFAGAFPAWLAPTQVSVIPIADRHA---EY 560

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E + A L   G  V  DD  +    +   A L+  P  +IVG +   D  + ++ R   
Sbjct: 561 AESVAAELKSRGFRVEVDDRQKSTNYKIREAQLMKVPYMIIVGDREKEDGTISVRLRSEK 620

Query: 425 IREDMSLEEVINYASHRFS 443
               ++L+E ++  S   +
Sbjct: 621 DLGSIALQEFMDKLSQEVN 639


>gi|261344716|ref|ZP_05972360.1| hypothetical protein PROVRUST_05973 [Providencia rustigianii DSM
           4541]
 gi|282567158|gb|EFB72693.1| proline--tRNA ligase [Providencia rustigianii DSM 4541]
          Length = 576

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 160/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y WLP G + L  V  I+REE
Sbjct: 1   MRTSKYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYDWLPTGVRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MENAGAIEVSLPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EITSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+G     + A++G IGG+ SHEF VLA +GE  V       DF    E
Sbjct: 181 YSKIFTRIGFDFRAVLADTGSIGGNASHEFQVLAQSGEDDVVF-STESDFAANIE 234



 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 74/194 (38%), Positives = 115/194 (59%), Gaps = 3/194 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P   T D+ N  + D  P+ K   +  RGIEVGHIF  GTKYS  M A+ +  +G +  V
Sbjct: 380 PLPETYDLRNVVVGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKASVQNEEGHNQIV 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  R+VAA IE SHD +GIIW D++APF+++++ +  H     ++  EK+YA 
Sbjct: 440 TMGCYGIGVTRIVAAAIEQSHDDRGIIWSDAIAPFQVAILPMNMHKSYRVKEVAEKLYAD 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV +DD  E+ G  FA  +L+G P  +++G + +  ++VE K R +  +  + L
Sbjct: 500 LKAQGIDVIFDDRKERPGVMFADMELIGVPYTIVIGDRNLDTNQVEYKSRRSDDKALVGL 559

Query: 432 EEVINYASHRFSNN 445
           + V+++   + + N
Sbjct: 560 DNVVSFLKEKLATN 573


>gi|303248073|ref|ZP_07334338.1| prolyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
 gi|302490472|gb|EFL50380.1| prolyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
          Length = 575

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 131/237 (55%), Positives = 170/237 (71%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y+ P L+E P +AE+ SHKL+LR GMI + + GIY++LPLG KAL+NV  I+REE
Sbjct: 1   MRLSRYYAPTLKETPAEAEVVSHKLLLRAGMIRKLTAGIYTYLPLGLKALNNVARIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q ADLW ESGR++ YG+E+LR  DR+++    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGALEILMPAVQPADLWKESGRWEFYGRELLRFVDRHEREFCLGPTHEEVVTDLVRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G+  SY  M+ +
Sbjct: 121 EIRSYRQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDKDDAGADASYWAMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y+RIF RLGLK   + A+SG IGG  SHEF+VLA+TGE  +       DF    E  
Sbjct: 181 YIRIFERLGLKFRAVSADSGAIGGSFSHEFMVLAETGEDTIAYCDAC-DFGANVEKA 236



 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/188 (36%), Positives = 111/188 (59%), Gaps = 2/188 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A   + +D+      D  P+       A+GIEVGH+F  G KYS  ++ATF    GK
Sbjct: 372 GRDAAILSFTDLRQVAPGDPCPKCGAPLSFAKGIEVGHVFKLGLKYSKSLNATFLDEAGK 431

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           + ++ MG YGIG  R+VAA IE ++D  GI++P ++APF+++L+N+ A D       +++
Sbjct: 432 EQFMIMGCYGIGVSRIVAACIEQNNDASGIVFPPAIAPFEVALLNLNAKDAEASAKADEL 491

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L+  G +   DD  E+ GS+F  ADL+GFP+Q+ +G K ++   VE K R TG + +
Sbjct: 492 YDALTAAGIETLLDDREERPGSKFKDADLMGFPIQLTLGGKGLARGIVETKDRRTGEKGE 551

Query: 429 MSLEEVIN 436
           + L+  ++
Sbjct: 552 LPLDGFMD 559


>gi|160872889|ref|ZP_02063021.1| prolyl-tRNA synthetase [Rickettsiella grylli]
 gi|159121688|gb|EDP47026.1| prolyl-tRNA synthetase [Rickettsiella grylli]
          Length = 572

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 129/235 (54%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S ++LP L+E P DAEI SH+LMLR GMI + + GIYSWLPLG + L  V  I+REE
Sbjct: 1   MRSSHFYLPTLKEAPADAEIKSHQLMLRAGMIRKVASGIYSWLPLGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR  A E+ +P LQ A+LW ES R+++YG E+LRL DR+ +A   GPTHEE++T + R 
Sbjct: 61  MNRIHAQEVLLPILQPAELWQESERWEAYGPELLRLTDRHQRAFCLGPTHEEIITALVRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF         +Y  M  S
Sbjct: 121 EVRSYKQLPLIFYQIQTKFRDEIRPRFGVMRAREFMMKDAYSFHPDKTSLSETYQMMHAS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGLK   + A++G IGG  SHEF VLA TGE  +F S    D+   +E
Sbjct: 181 YCRIFTRLGLKFRVVLADTGNIGGSQSHEFQVLAQTGEDHIFYSDR-SDYAANAE 234



 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 107/196 (54%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
               P    +D+   ++ D  P+ K      RGIEVGHIF  G KY+  M+A    +  +
Sbjct: 373 GRDCPLPPIADLRKVRVGDPSPDGKGRLKMERGIEVGHIFQLGNKYACAMNARITTSHAR 432

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEK 367
           +  ++MG YGIG  RVV   IE  HD +GIIWP ++APF++ +I I  H ++  ++A + 
Sbjct: 433 EIPMEMGCYGIGISRVVGGAIEQCHDDQGIIWPSAMAPFQVVIIPIAYHRNRSVKEAADT 492

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y +L +   DV  DD  E+ G  FA  DL+G P ++++  K + +  V  K R+     
Sbjct: 493 LYQQLQQARIDVLLDDRKERPGKLFADNDLIGIPHRLVINEKMILEKTVAYKARIEKHEH 552

Query: 428 DMSLEEVINYASHRFS 443
            ++LE ++N+   + +
Sbjct: 553 PVNLENILNFLHQKIN 568


>gi|15643503|ref|NP_228549.1| threonyl-tRNA synthetase [Thermotoga maritima MSB8]
 gi|8928373|sp|Q9WZJ9|SYT_THEMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|4981265|gb|AAD35821.1|AE001744_11 threonyl-tRNA synthetase [Thermotoga maritima MSB8]
          Length = 640

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 88/443 (19%), Positives = 167/443 (37%), Gaps = 41/443 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      +L L   +  +++ G+  +LP G   L+ +    RE     G
Sbjct: 229 YLKFLEEAQRRDHRKLGPQLELFM-LNTEYAPGMPFFLPKGVVVLNELMKFSRELHRERG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +D Y + M    +++++     P +      +++S   SY
Sbjct: 288 YQEIFTPLIMNEQLWKISGHWDHYAENM-YFIEKDEERYAVKPMNCPGHILVYKSRTVSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F++     R E      G+MR R F   DA+ F  TP+  +     +      I
Sbjct: 347 RDLPLRFFEFGRVHRYERSGVLHGLMRVRSFTQDDAHIFC-TPDQIEEEILGVLDLINTI 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G                      V   T        +   +    +     +    
Sbjct: 406 YSQFGFTYR------------------VELSTMPEDHMGDEAIWEKATTALKNALERAGL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   + DS+    + +   ++               + T+ G
Sbjct: 448 SYKVNEGEGAFYGPKIDFH---IRDSIGREWQCATIQLDF--------MMPEKFNVTYIG 496

Query: 305 ADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D K+H  V +     G++     ++     G    W   +AP ++++I I    +   D
Sbjct: 497 PDNKEHRAVMIHRAIYGSLERFFGILIEHFAGAFPTW---LAPIQVAVIPI---SEKHND 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+  R+S+ G  VF+D+  E +G +   A     P  +I+G K +   K+ ++ R  
Sbjct: 551 GAEKVARRISQEGFRVFFDNRRETLGYRIRQAQTQKIPYMIIIGDKELESGKISVRTRTG 610

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
              +D+  E  +    +   + +
Sbjct: 611 KEIKDVDPEHFVETLRNEVLSRK 633


>gi|332141016|ref|YP_004426754.1| threonyl-tRNA synthetase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|238693239|sp|B4RSL8|SYT_ALTMD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|327551038|gb|AEA97756.1| threonyl-tRNA synthetase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 638

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 143/447 (31%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L      + + G+  W   G      + + +R++
Sbjct: 227 KQLKSYLQRLEEAEKRDHRKIGKALNLF--HWQEEAPGMVFWHNDGWSIYTELESFVRKK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P +    LW +SG +D Y + M    +   +     P +      IF  
Sbjct: 285 LREYGYDEVKGPLMMDRSLWEKSGHWDKYAENMFT-TESEKREYAVKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +  +   +    
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQILEE-VSGCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G ++I ++  + P     + E                   D    +     
Sbjct: 403 MVYETYAAFGFENIKVKLSTRPEKRVGADE-----------------IWDKSEAALAEAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                         A Y    +     L D L    +     ++       G+       
Sbjct: 446 KANDIEFDYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFSMPGRLGS------- 495

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+   DG+    V +    +G++     ++     G   +W        +++       
Sbjct: 496 -TYVAEDGERKVPVMIHRAILGSLERFIGILTEEFAGFFPLWLAPQQVVVMNIT------ 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D       +L  +G     D   E+IG +     L   P  ++VG K +   +V +
Sbjct: 549 DKQADYASDCVKKLQDLGFRAKSDLRNEKIGFKIREHTLKRIPYMLVVGDKEMEAGEVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       M LE+ I  A       
Sbjct: 609 RSRRGDDLGKMGLEDFIAMAQQEVVEK 635


>gi|317493988|ref|ZP_07952404.1| prolyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917761|gb|EFV39104.1| prolyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 572

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+W+P G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWMPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDMVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+KMF +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTSQESLQETYDKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L   P++A++G IGG+ SHEF VLA +GE  V       DF    E
Sbjct: 181 YSKIFSRMDLDFRPVQADTGSIGGNASHEFQVLAQSGEDDVVF-SSESDFAANIE 234



 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 72/192 (37%), Positives = 111/192 (57%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K   +  RGIEVGHIF  GTKY+  + AT +G DG++  +
Sbjct: 380 PLPLVADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYTEALKATVQGEDGRNQLM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     +D  E +Y  
Sbjct: 440 TMGCYGIGVTRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHKSFRVKDLAESLYNS 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  V++G + +   ++E K+R  G ++ +  
Sbjct: 500 LRSKGIDVIMDDRKERPGVMFADMELIGVPHTVVIGDRNLDSDEIEYKNRRNGEKQMIKT 559

Query: 432 EEVINYASHRFS 443
            E+ ++   +  
Sbjct: 560 GEIEDFLLAQIK 571


>gi|1565235|emb|CAB02510.1| Threonyl tRNA Synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 601

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 145/442 (32%), Gaps = 44/442 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   M  + + G+  +LP GQ   + +    RE Q   G 
Sbjct: 198 LHMLEEAAKRDHRKLGKQLGLF--MFSEEAPGMPFYLPKGQIVRNELERFSRELQTNAGY 255

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y   M   ++ +D      P +      IF++ + SYR
Sbjct: 256 DEVRTPFMMNQRLWEQSGHWDHYRDNM-YFSEVDDTRFAMKPMNCPGHMLIFKNSLYSYR 314

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R E      G++R R F   DA+ F    +        + +      
Sbjct: 315 DLPIRMAEFGQVHRHEYSGALNGMLRVRTFCQDDAHIFVREDQIESEIKEAIRLI----- 369

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                           +      E+ V   T            +    +     +++   
Sbjct: 370 --------------DEVYRTFGFEYSVELSTRPEDSLGDDSLWEASERALARVLEELGLS 415

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    D H   + D+L  + + +   ++    F    K+      T+   
Sbjct: 416 YEINEGDGAFYGPKIDFH---IKDALKRSHQCATIQLD----FQMPEKFD----LTYINE 464

Query: 306 DGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +     +    +     R    +IE       +                     V  D
Sbjct: 465 LNEKVRPVVIHRAVFGSIDRFFGILIEHYGGAFPVWLAPIQVQIIPV-------SHVHLD 517

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C K+ A L + G     D+  E++G +   + +   P  +++G     ++ V ++    
Sbjct: 518 YCRKVQAELKQAGIRAGIDERNEKLGYKIRESQVQKIPYVLVLGDHEEQENAVNVRRFGH 577

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              E +  +   +    +  N 
Sbjct: 578 QQNEHVPFQTFKDKLVKQVENR 599


>gi|282881717|ref|ZP_06290380.1| threonine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281304476|gb|EFA96573.1| threonine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 655

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 152/444 (34%), Gaps = 38/444 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L      +  KG+  WLP G +    +  ++R  Q R 
Sbjct: 232 EYLTMLEEAKKRDHRKIGKEMELFM-FSERVGKGLPIWLPKGTELRLRLQDMLRNIQRRY 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G  E+  P + S +L+V SG Y  YGK+  +       D+  +  P +     ++F    
Sbjct: 291 GYQEVITPHIGSKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEVFAYKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    +R E      G+ R R F   DA+ F    +        M    
Sbjct: 351 RSYKDLPLRIAEFGTVYRYEKSGELHGLTRVRSFTQDDAHIFCRPDQVKNEFLRVM---- 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                        ++A       D     I L D  + + +   D +         D   
Sbjct: 407 -----------DIIQAVFKIFNFDNFEAQISLRDPKDKEKYIGSDEVWAESEQAIIDACK 455

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L++ VE    A Y    D     + D++    ++    ++      F          
Sbjct: 456 EKGLDAKVEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLPQRF--------KL 504

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D        +     G++    AV+     G   +W           + I    +
Sbjct: 505 EYTDEDNSKRTPVMVHRAPFGSLERFTAVLIEHTAGHFPLW------LTPDQVAILPISE 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  ++  + +        DD  E+IG +    +L   P  VIVG K  +D  V ++
Sbjct: 559 KYNAYARQVAKQFAAQQVRATIDDRNEKIGRKIRDNELKRVPYMVIVGEKEAADGLVSMR 618

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R  G +  + ++E I   ++  +
Sbjct: 619 ERGGGEQATLRVDEFIARINNEVA 642


>gi|118602649|ref|YP_903864.1| threonyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|166225495|sp|A1AWT6|SYT_RUTMC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118567588|gb|ABL02393.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 632

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 141/438 (32%), Gaps = 41/438 (9%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E  R D         L    I + + G+  W   G      +   +R        
Sbjct: 232 LHRLEEASRRDHRKIGKIQDLF--HIQEEAPGMIFWHAKGWTLCQLIEQYMRGIFKDNDY 289

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P L    LW +SG ++ +G  M       ++     P +      I+   +KSYR
Sbjct: 290 QEVHTPQLIDKSLWEKSGHWEKFGDTMFT-TSSENRDYAVKPMNCPAHIQIYNQGLKSYR 348

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F+  D + F    +      +        ++
Sbjct: 349 DLPLRLAEFGSCHRNEPSGTLHGIMRVRNFVQDDGHIFCTPEQIQVE-VSTFIDLTFAVY 407

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G   + ++  + P     S E    A+    +   +K                    
Sbjct: 408 KHFGFDKVDIKLSTRPENHVGSDEVWDKAEAALAEALDAKVIKWE--------------- 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               +   A Y    +     L D L    +     ++              + A F   
Sbjct: 453 --FQKGEGAFYGPKIEF---VLKDCLERQWQCGTLQVDFSMP--------ERLDAQFIDE 499

Query: 306 DGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +       +     +G++     ++   ++G    W   + P +  +INI        D 
Sbjct: 500 NNIKQTPVVLHRAILGSLERFVGILIEHYEGAYPCW---LTPIQAVVINISGK---QADF 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              I  +L K G  V  D   E+IG +     L  +P  +IVG + +   ++ ++ R   
Sbjct: 554 VIDITKKLKKQGLRVISDLRNEKIGFKIREHSLQRYPYILIVGDREMEKDQISVRQRGGK 613

Query: 425 IREDMSLEEVINYASHRF 442
               MS+E  +   +   
Sbjct: 614 DLGVMSIEAFVEKINQEI 631


>gi|312173361|emb|CBX81615.1| Prolyl-tRNA synthetase [Erwinia amylovora ATCC BAA-2158]
          Length = 572

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 120/235 (51%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LRL DR+D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRLVDRSDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M  +
Sbjct: 121 ELSSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQGSLQETYDAMHRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y + F R+GL    ++A++G IGG+ SHEF VLA +GE  +       D+    E
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVF-SSESDYAANIE 234



 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 108/192 (56%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M A+ +G DG++  +
Sbjct: 380 PLPRIADIRNVVEGDASPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKASVQGEDGRNQIL 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIW  ++APF+++++ +        ++  E +Y +
Sbjct: 440 TMGCYGIGITRIVAAAIEQNHDERGIIWSPALAPFQVAILPMNMQKSFRVKELAEALYHQ 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  ++VG + +   +VE K R  G +  +  
Sbjct: 500 LRAKGIDVILDDRKERPGVMFADMELIGVPHTIVVGERHLDSEEVEYKSRRAGEKRMIKT 559

Query: 432 EEVINYASHRFS 443
            E+I++     +
Sbjct: 560 NEIIDFLVEELA 571


>gi|325266259|ref|ZP_08132938.1| proline--tRNA ligase [Kingella denitrificans ATCC 33394]
 gi|324982221|gb|EGC17854.1| proline--tRNA ligase [Kingella denitrificans ATCC 33394]
          Length = 569

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 118/239 (49%), Positives = 160/239 (66%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A + SHKLMLR G+I  ++ G+Y+W+P+G + L  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPAEAALPSHKLMLRAGLIKANASGLYTWMPMGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q ADLW ESGR+D YG E+LR+ DR+D    + PT EE++TDI R 
Sbjct: 61  MNRAGAIELLMPVIQPADLWKESGRWDFYGDELLRITDRHDNEFCFSPTCEEMVTDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EVNSYKQLPKNFYHIQTKFRDERRPRFGVMRAREFVMKDAYSFHADFASLQETYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y R+F RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E    
Sbjct: 181 YCRVFGRLGLNFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSD-ASDYAANVELAQT 238



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/196 (33%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A     +D+ N    D     +     ARGIEVGH+F    KYS  ++A+F   +GK
Sbjct: 374 GRDAAEPEFADIRNVVAGDPSPCGKGSLQLARGIEVGHVFQLRDKYSAALNASFLDNNGK 433

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE +HD +GIIW D++APF   ++ +     +  R+A +K
Sbjct: 434 SQIMEMGCYGIGITRVVAAAIEQNHDERGIIWTDTMAPFAAVIVPMNYKKSEAVREAADK 493

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G   A ++LLG P ++++G + + +  VE   R     +
Sbjct: 494 IYADLLAAGVDVLLDDRDERAGVLLADSELLGIPHRIVIGDRGLKEGNVEYARRTDSEAQ 553

Query: 428 DMSLEEVINYASHRFS 443
            + + ++  + + +  
Sbjct: 554 SVPVGDIAAHVAAQLR 569


>gi|330959255|gb|EGH59515.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 571

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 116/237 (48%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +    +  D+    E  
Sbjct: 181 YSNIFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVF-SNGSDYAANIEKA 236



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 111/207 (53%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +++YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDRLYAELTGAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   R  
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGRVK 570


>gi|332521036|ref|ZP_08397494.1| threonyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
 gi|332043129|gb|EGI79326.1| threonyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
          Length = 644

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 156/447 (34%), Gaps = 38/447 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L T    +   G+  WLP G    + +   ++  Q 
Sbjct: 226 LTEYLALLEEAKKRDHRKLGKELELFT-FSQKVGAGLPLWLPKGTALRERLENFLKAAQK 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G   +  P +   +L+V SG Y  YG++  +     ++D+  +  P +     +I+ +
Sbjct: 285 KAGYEMVMSPHIGQKELYVTSGHYAKYGEDSFQPIKTPKDDEEFLLKPMNCPHHCEIYNA 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SY++LP  + +    +R E      G+ R R F   DA+ F  TP+     +  +  
Sbjct: 345 SQWSYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFC-TPDQLDAEFKNVID 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG ++   +                  D    + +                 
Sbjct: 404 LVLYVFGSLGFENFTAQVSLR--------------DPENPEKYIGSLENWEKAEQAIISA 449

Query: 240 DDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                LN ++E    A Y    D     + D+L    ++    ++               
Sbjct: 450 AKDKGLNYVIETGEAAFYGPKLDFM---VKDALGRQWQLGTIQVDYNLP--------ERF 498

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+KG+D + H    +     G+M    A++     G   +W         + ++I   
Sbjct: 499 DLTYKGSDNELHRPVMIHRAPFGSMERFIAILLEHTGGNFPLW------LMPNQVSILTL 552

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +      EK+   L         D+  E IG +   A++   P  +I+G     ++K+ 
Sbjct: 553 SEKYEKYGEKVLNLLENHEIRALIDNRSETIGKKIREAEMNKTPYMIIIGENEEKENKIS 612

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           ++         +S+E+         + 
Sbjct: 613 VRQHGGEDLGTISVEDFSEIVKTEINK 639


>gi|330877991|gb|EGH12140.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 412

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 117/237 (49%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E  
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSD-GSDYAANIEKA 236


>gi|170717553|ref|YP_001784641.1| threonyl-tRNA synthetase [Haemophilus somnus 2336]
 gi|189083611|sp|B0UU42|SYT_HAES2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|168825682|gb|ACA31053.1| threonyl-tRNA synthetase [Haemophilus somnus 2336]
          Length = 642

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 136/442 (30%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLHRLEEAAKRDHRKIGKALNLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLKEYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  +G + +Y  +++      ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWERTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +            I
Sbjct: 349 RDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMVYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P                           D               
Sbjct: 408 YSTFGFTDIFVKLSTRPEKR-----------------IGEDVMWDRAEQGLANALKHNGL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    +     L D L    +     ++                AT+  
Sbjct: 451 EYEIQEGEGAFYGPKIEF---ALRDCLDREWQCGTIQLDFALPGRLD--------ATYVA 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G++     +I   + G    W   +    +++           D
Sbjct: 500 EDNARRTPVMIHRAILGSIERFIGIITEEYAGFFPAWLAPIQAVVMNIT------DSQAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+  + S+ G  V  D   E++G +     L   P  ++ G K + ++K+ ++ R  
Sbjct: 554 YVQKVVKQFSEAGLRVKADIRNEKVGFKIREHTLRRVPYMLVCGDKEIVENKIAVRTRKG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                 S+EE +     +    
Sbjct: 614 TDLGTFSVEEFVEILKQQVRKR 635


>gi|90408309|ref|ZP_01216474.1| prolyl-tRNA synthetase [Psychromonas sp. CNPT3]
 gi|90310610|gb|EAS38730.1| prolyl-tRNA synthetase [Psychromonas sp. CNPT3]
          Length = 573

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 125/237 (52%), Positives = 161/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L   +E P DA I SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTTQYLLSTQKEAPSDAVIVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q ADLWVE+GR+D YG E+LRL DR+D+  + GPTHEEV+T++ R 
Sbjct: 61  MERAGAVEILMPVVQPADLWVETGRWDKYGGELLRLKDRHDRDFVLGPTHEEVVTELVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   +QIQ KFRDE RPRFGVMRSREF MKDAYSF L  E  + +Y  MF +
Sbjct: 121 EINSYKQLPLNLFQIQTKFRDETRPRFGVMRSREFTMKDAYSFHLEDECLEKTYQTMFSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF RLGL+  P+ A+SG IGG+ SHEF VLA +GE  +       D+    E  
Sbjct: 181 YCRIFERLGLEYRPVIADSGSIGGNSSHEFHVLAPSGEDAIAF-SSESDYAANVEKA 236



 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 67/187 (35%), Positives = 106/187 (56%), Gaps = 3/187 (1%)

Query: 258 ATSDVHNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T+D+ N +  D     +      RGIEVGHIF  G  YS  M+A+     GK+  + MG
Sbjct: 385 ETADLRNVQEGDLSPCGKGTLSITRGIEVGHIFQLGKTYSEAMNASVLNQQGKNQTLTMG 444

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  R+VAA IE ++D  GIIW +++APF + ++ +         D  E+ YA L  
Sbjct: 445 CYGIGISRIVAAAIEQNNDANGIIWNEALAPFSVVIVPMNMKKSHRVADLAERYYAELQA 504

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V +DD  E+ G  FA A+L+G P  +I+G + + +  +E K+R +G ++D+ +E+V
Sbjct: 505 AGIEVLFDDRKERPGVMFADAELIGIPHMLIIGDRSIDNGVIEYKNRKSGEKQDVKIEDV 564

Query: 435 INYASHR 441
           I +   +
Sbjct: 565 IAFIKEQ 571


>gi|258516344|ref|YP_003192566.1| prolyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
 gi|257780049|gb|ACV63943.1| prolyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
          Length = 572

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 114/243 (46%), Positives = 162/243 (66%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AE+ SHKL+LR G I + + G+Y++LPL Q+ L  +  I+REE
Sbjct: 1   MRASQLLIPTLRETPAEAEVISHKLLLRAGYIRRSAAGVYTYLPLAQRVLSKIKRIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q A+LW ESGR+D YG E+ RL DR+ +    GPTHEE++T + +S
Sbjct: 61  MDRQGGQEILMPIMQPAELWQESGRWDVYGPELFRLKDRHGRDFALGPTHEEIITALVKS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE RPRFG++R REF+MKD YSFD    G   +Y KM+ +
Sbjct: 121 ELSSYKQLPLLLYQIQNKYRDERRPRFGLLRGREFIMKDLYSFDADEAGLDITYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDF 239
           Y+RIF R GL+  P+ A+SG IGG  +HEF+VLA++GE   VFC  +   +    E    
Sbjct: 181 YVRIFQRCGLRFRPVEADSGAIGGSDTHEFMVLAESGEALVVFCQNENCSYAANVEKAQS 240

Query: 240 DDI 242
            ++
Sbjct: 241 SEL 243



 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 2/190 (1%)

Query: 257 AATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              +D+   K  +  P    V   A+GIEVG +F  G KYS  + ATF+  +GK  +  M
Sbjct: 379 GKIADIRFVKAGEPCPVCGGVLAEAKGIEVGQVFKLGDKYSKSLEATFQDENGKTRHYVM 438

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R +AA IE  +D  GI WP ++APF + ++ +   DQ   D  E +Y    +
Sbjct: 439 GCYGIGVSRTMAAAIEQHNDLNGITWPAAIAPFHLVIVPVNVKDQALMDISEVLYRSFLE 498

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G +F  ADL+G+PL++ VG KF+ +  +E++ R +G    +  EE+
Sbjct: 499 SGVEVVLDDRPERPGVKFKDADLVGYPLRLTVGKKFLEEGLLELRERRSGKTHFLKEEEI 558

Query: 435 INYASHRFSN 444
           +++      +
Sbjct: 559 LSFIKDFIKS 568


>gi|118580723|ref|YP_901973.1| threonyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
 gi|166225474|sp|A1ARE5|SYT_PELPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118503433|gb|ABK99915.1| Ser-tRNA(Thr) hydrolase [Pelobacter propionicus DSM 2379]
          Length = 636

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 154/444 (34%), Gaps = 39/444 (8%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E+ R D      +L L +    +   G+  W P G      +    R E  +
Sbjct: 230 EAYLHRLEESKRRDHRRLGRELDLFS-FSDEVGAGLVIWHPKGAMLRTILEDFERREHLK 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +   +LW  SG Y++Y + M    + ++++    P +      I++SH++
Sbjct: 289 RGYDIVLGPQILKKELWQRSGHYENYRENM-YFTEVDEQSYGIKPMNCLAHMMIYKSHLR 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  ++++    R E      G++R R F   DA+      +        +     
Sbjct: 348 SYRDLPLRYFELGTVHRHERAGVLHGLLRVRGFTQDDAHILCAPEQLDGE-IKGVLKFVS 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G +       + P                           +    +  +   D 
Sbjct: 407 DVMAIFGFEYEM-ELSTRPEKS-----------------IGDDAAWELATEALLSALKDT 448

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A Y    D+   KL D+L    + +    +    F    ++ L   A  
Sbjct: 449 GRSFEINEGDGAFYGPKIDI---KLKDALDRRWQCATIQCD----FTLPERFDLQYVAA- 500

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                K   V +    +GA+     V+    +     +P  ++P +  L+ +  +     
Sbjct: 501 --DGEKKRPVMVHRVVLGAIERFIGVLI---EHYAGNFPLWLSPVQAMLVTVTDNH---I 552

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              + +   L + G  V  D   E++  +   A L   P  +++G K +  + V  + R 
Sbjct: 553 PYAQGVLEHLREAGIRVQGDFRNEKLSFKIREAQLQKVPYMLVIGDKEMESATVTPRFRD 612

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
                 M  E+ + +      N R
Sbjct: 613 GKNLVAMKPEDFVAFVVEETKNFR 636


>gi|321313312|ref|YP_004205599.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|320019586|gb|ADV94572.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 638

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 146/442 (33%), Gaps = 44/442 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   M  + + G+  +LP GQ   + +    RE Q   G 
Sbjct: 235 LHMLEEAAKRDHRKLGKQLGLF--MFSEEAPGMPFYLPKGQIVRNELERFSRELQTNAGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y   M   ++ +D      P +      IF++ + SYR
Sbjct: 293 DEVRTPFMMNQRLWEQSGHWDHYRDNM-YFSEVDDTRFAMKPMNCPGHMLIFKNSLYSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R E      G++R R F   DA+ F    +        + +      
Sbjct: 352 DLPIRMAEFGQVHRHEYSGALNGMLRVRTFCQDDAHIFVREDQIESEIKEAIRLI----- 406

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                           +      E+ V   T            +    +     +++   
Sbjct: 407 --------------DEVYRTFGFEYSVELSTRPEDSLGDDSLWEASERALARVLEELGLS 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    D H   + D+L  + + +   ++    F    K+      T+   
Sbjct: 453 YEINEGDGAFYGPKIDFH---IKDALKRSHQCATIQLD----FQMPEKFD----LTYINE 501

Query: 306 DGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +     +    +     R    +IE       +                     V  D
Sbjct: 502 HNEKVRPVVIHRAVFGSIDRFFGILIEHYGGAFPVWLAPIQVQIIPV-------SHVHLD 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C K+ A L + G     D+  E++G +   + +   P  +++G     ++ V ++    
Sbjct: 555 YCRKVQAELKQAGIRAGIDERNEKLGYKIRESQVQKIPYVLVLGDHEEQENAVNVRRFGH 614

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              E +S +   +    +  N 
Sbjct: 615 QQNEHVSFQTFKDKLVKQVENR 636


>gi|312886253|ref|ZP_07745867.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Mucilaginibacter
           paludis DSM 18603]
 gi|311301278|gb|EFQ78333.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Mucilaginibacter
           paludis DSM 18603]
          Length = 641

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 157/448 (35%), Gaps = 39/448 (8%)

Query: 2   RRSKY--FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           + S+   +L +++E   RD      +L L      +   G+  WLP G    + +   ++
Sbjct: 224 KASELTDYLHLIEEAKKRDHRKLGKELELFA-FSEKVGMGLPLWLPKGTALRERLVNFLQ 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTD 116
           + Q + G  ++  P +   +L+V SG Y+ YG +  +     +  +     P +     +
Sbjct: 283 KAQVKAGYEQVITPHIGHKNLYVTSGHYEKYGADSFQPIKTPQEGEEFFLKPMNCPHHCE 342

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+++  +SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + 
Sbjct: 343 IYKTKPRSYKDLPVRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFCR-PDQVKEEFK 401

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K+    L +F+ LG K    +                       +   + +       + 
Sbjct: 402 KVIDLVLYVFNALGFKDYTAQVSLRDPENKA-------------KYIGTDENWAIAEAAI 448

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
               ++       V    A Y    D     + D+L    ++    ++            
Sbjct: 449 IESAEEKGLPTVHVTGEAAFYGPKLDFM---VKDALGRKWQLGTIQVDYNLP-------- 497

Query: 296 LPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 + G+D + H    +     G+M    AV+     G   +W        + +   
Sbjct: 498 ERFELEYTGSDNQKHRPVMIHRAPFGSMERFIAVLIEHCAGNFPLWLSPEQFIVLPI--- 554

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   +  +K+   L         D   E+IG +   A++   P  +IVG K  ++ 
Sbjct: 555 ---SEKYEEYAKKLSDLLKDSDICGLIDFRDEKIGRKIRDAEVKKIPYMLIVGEKEEAEG 611

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V ++    G    MS+EE         
Sbjct: 612 MVSVRKHGEGDLGSMSIEEFTQKIKKEI 639


>gi|325954887|ref|YP_004238547.1| threonyl-tRNA synthetase [Weeksella virosa DSM 16922]
 gi|323437505|gb|ADX67969.1| threonyl-tRNA synthetase [Weeksella virosa DSM 16922]
          Length = 640

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 150/435 (34%), Gaps = 36/435 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L      +  +G+  WLP G      +   + ++Q + G   +  P
Sbjct: 236 AKKRDHRKLGKELGLFA-FSEKVGQGLPLWLPKGAALRRKLENFLLKQQQKLGYEMVITP 294

Query: 73  TLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG Y  YG +  +        +  +  P +     +I+++   SYR+LP 
Sbjct: 295 HIGQKELYVTSGHYAKYGADSFQPIQTPNEGEEFLLKPMNCPHHCEIYKTSQWSYRDLPK 354

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + +    +R E      G+ R R F   DA+ F  + +  +  + K+    L +F  LG
Sbjct: 355 RYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCTSDQLLEE-FKKVIDLVLFVFESLG 413

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +   +                       +   + +  +    +  T   +      + 
Sbjct: 414 FDNYSAQISLRDPNNKE-------------KYIGTDENWEKAENAIITAAKEKNLPTVVE 460

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D     + D+L    ++    ++                 ++ G D + 
Sbjct: 461 HGEAAFYGPKLDFM---VKDALGRQWQLGTIQVDYNLP--------ERFELSYIGPDNQA 509

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H    +     G+M    A++  +  G   +W          +  I    +   +  EK+
Sbjct: 510 HRPVMIHRAPFGSMERFIAILLENTAGNLPLW------LTPDVFTILPISEKYVEFGEKV 563

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L++   +   D+  E+ G +   A++   P  +IVG K   +  V ++    G   +
Sbjct: 564 LNLLAEQEINGLIDNRNEKTGKKIRDAEVKKIPYMLIVGEKEEENGTVSVRKHGEGDLGE 623

Query: 429 MSLEEVINYASHRFS 443
           M +EE I +      
Sbjct: 624 MKIEEFIQFVKKEMK 638


>gi|255534998|ref|YP_003095369.1| threonyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255341194|gb|ACU07307.1| Threonyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
          Length = 639

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 152/444 (34%), Gaps = 38/444 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L +      +   G+  WLP G      +   + E Q 
Sbjct: 226 LTEYLERLEEAKRRDHRKLGKELGIFA-FSEKVGAGLPLWLPKGAALRKKLENFLSEAQK 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G   +  P + + +L+V SG +D YG +  +        +  +  P +     +I++ 
Sbjct: 285 KAGYEFVMTPHIGAKELYVTSGHWDKYGADSFQPIKTPNEGEEFMLKPMNCPHHCEIYKV 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SY++LP  F +    +R E      G+ R R F   DA+ F    +     +  +  
Sbjct: 345 GQWSYKDLPKRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFCTPDQLLTE-FENVID 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG +    +                  D    + +   D       +     
Sbjct: 404 LTLYVFKSLGFEDFVTQISLR--------------DPENKEKYIGSDENWKKAENAIIQA 449

Query: 240 DDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                L ++VE    A Y    D     + D+L  + ++    ++               
Sbjct: 450 AAKKGLKTVVEYGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERF 498

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + G+D + H    +     G+M    A++  +  G   +W        + +      
Sbjct: 499 DLWYIGSDNEKHRPVMIHRAPFGSMERFIAILLENTAGDFPLWLAPDQFTILPI------ 552

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D  +K+   L         DD  E+ G +   A++   P  ++VG     +  V 
Sbjct: 553 SEKYADYAKKVSELLENHDICGLIDDRNEKTGRKIRDAEIKKLPFMLVVGETEELNGTVS 612

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++ R  G    MS+E+ I Y   +
Sbjct: 613 VRRRGEGDLGTMSVEDFIAYFKEQ 636


>gi|88810665|ref|ZP_01125922.1| threonyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
 gi|88792295|gb|EAR23405.1| threonyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
          Length = 641

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 145/445 (32%), Gaps = 41/445 (9%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  +++L  L+E  R D    +    L    + + + G+  W P G +    +   +R +
Sbjct: 226 KALQHYLHALEEAQRRDHRRLAKIQDLF--HLQEEAPGMVFWHPNGWRVYLLLQDYLRAK 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+  P L    LW  SG +  +  +M    +   +     P +      IF  
Sbjct: 284 LDAHGYREVRTPELVDRSLWERSGHWQKFRADMFT-TESEKRDYAVKPMNCPCHVQIFNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F+  DA+ F    +           
Sbjct: 343 GLKSYRDLPLRLAEFGNCHRNEASGTLHGLMRVRNFVQDDAHIFCTEEQIQSE-VAGFLD 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G   + +   + P                      +    D    + +   
Sbjct: 402 LAEAVYRDFGFDEVIVALSTRPEQR-----------------VGADALWDKAEQALDQAL 444

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   +     A Y    ++    + DSL    +     ++       G        
Sbjct: 445 RARRLDWEVKPGEGAFYGPKIEL---SMKDSLGRVWQCGTMQVDFSMPQRLG-------- 493

Query: 300 ATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   DG     V +     G+      V+    +  G  WP  +AP +  ++NI    
Sbjct: 494 AQYVAEDGARLVPVMLHRAIFGSFERFIGVLI---EHYGGAWPVWLAPIQAVVLNITDR- 549

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                    I  RL++ G   + D   E+IG +     L   P  +IVG +      V +
Sbjct: 550 --QGAYASGIEKRLAEHGFRAYGDLRNEKIGFKIREHTLQKVPYLLIVGERERESMTVAV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R       M L+  I   S   +
Sbjct: 608 RTREGEDLGSMPLKAFIERLSGEVA 632


>gi|229916382|ref|YP_002885028.1| threonyl-tRNA synthetase [Exiguobacterium sp. AT1b]
 gi|259516484|sp|C4L461|SYT_EXISA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229467811|gb|ACQ69583.1| threonyl-tRNA synthetase [Exiguobacterium sp. AT1b]
          Length = 647

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 84/440 (19%), Positives = 168/440 (38%), Gaps = 33/440 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   +  +  +G+  WLP G      V   I +++   G 
Sbjct: 237 LRLLEEAKERDHRKLGKELDLF-FVSQEVGQGLPMWLPKGASIRRTVERYIVDKELELGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S DL+  SG +D Y  +M    + +++ ++  P +      I++   +SYR
Sbjct: 296 QHVYTPVLGSVDLYKTSGHWDHYQDDMFPKMEMDNEELVLRPMNCPHHMTIYKHEPRSYR 355

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++   +++ +     +TPE  K  +  +      ++ 
Sbjct: 356 ELPLRIAELGGMHRYEMSGALTGLQRVRYMVLNDGHTFVTPEQMKQEFKDIVHLIQEVYA 415

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDFDDIISL 245
             G+K    R                  D  + + +  +    +          D++   
Sbjct: 416 DFGIKDYRFRLS--------------YRDPADKEKYFDNDAIWEMAQSQLKETMDELELP 461

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  +L + + +S   ++    F    ++      T+ G 
Sbjct: 462 YFEAEGEAAFYGPKLDV---QVRTALGKEETLSTVQLD----FLLPERFD----LTYTGP 510

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DGKDH   +     G +  +   +    +     +P  +AP ++ LI +     V  +  
Sbjct: 511 DGKDHRPIVLHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQVKLIPV---SHVHDEYV 565

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++ A L K G  V  D   E++G +   A +   P+ +++G K   +  V I+      
Sbjct: 566 AEVKAELVKRGVRVETDLRDEKLGYKIREAQMKKIPMTLVLGDKERDERAVNIRRYGQQE 625

Query: 426 REDMSLEEVINYASHRFSNN 445
           +   SL+E I   +   +N 
Sbjct: 626 QVSASLDEFIASLTDEIANR 645


>gi|86134203|ref|ZP_01052785.1| Threonyl-tRNA synthetase [Polaribacter sp. MED152]
 gi|85821066|gb|EAQ42213.1| Threonyl-tRNA synthetase [Polaribacter sp. MED152]
          Length = 647

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 81/433 (18%), Positives = 148/433 (34%), Gaps = 36/433 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T    +   G+  WLP G    + +   ++  Q + G   +  P
Sbjct: 238 AKKRDHRKLGKELELFT-FSQKVGAGLPLWLPKGAALRERLQNFLKAAQKKAGYEMVMTP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG Y+ YG++  +     + D+  +  P +     +++     SY++LP 
Sbjct: 297 HIGQKELYVTSGHYEKYGEDSFQAIKTPKMDEEFLLKPMNCPHHCEVYNFKPYSYKDLPK 356

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +    +R E      G+ R R F   DA+ F  TPE     + ++    L +F  LG
Sbjct: 357 RFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPEQLDQEFKEVIDLVLYVFGSLG 415

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            +    +     +                 +     +  +    +  +   D      I 
Sbjct: 416 FEDFTAQVSIRDME-------------NLDKYIGDVETWEIAENAIISAAKDKGLDYVIE 462

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E   A Y    D     + D+L  + ++    ++                 T+ G+D + 
Sbjct: 463 EGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------KRFDLTYTGSDNQS 511

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H    +     G+M    AV+     G   +W           + I       +   EK+
Sbjct: 512 HRPVMIHRAPFGSMERFIAVLLEHTGGNFPLW------LTPEQVIILPISDKYQKYTEKV 565

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L         DD  E+ G +   A++   P  VIVG K   D  V ++    G    
Sbjct: 566 LESLENSEIRALVDDRSEKTGRKIRDAEVSKIPFMVIVGEKEEQDGTVSVRKHGEGDIGT 625

Query: 429 MSLEEVINYASHR 441
            ++EE  +     
Sbjct: 626 FTIEEFKSLIKEE 638


>gi|241664234|ref|YP_002982594.1| prolyl-tRNA synthetase [Ralstonia pickettii 12D]
 gi|240866261|gb|ACS63922.1| prolyl-tRNA synthetase [Ralstonia pickettii 12D]
          Length = 574

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 119/233 (51%), Positives = 160/233 (68%), Gaps = 1/233 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   G+Y+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGLYTYMPVGLRVIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q  +LW E+GR+D  G E+LR  DR+++  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAVEVLMPVVQPGELWQETGRWDKMGDELLRFKDRHERDFVMQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KM+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAEGLKLSYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y RIF R GL+   + A++G IGG  SHEF V+ADTGE  +    D  D+   
Sbjct: 181 YTRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIIYCPD-SDYAAN 232



 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 68/192 (35%), Positives = 106/192 (55%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D  P+ K      RGIEVGH+F  GT+YS  M+ATF   +GK   +
Sbjct: 382 PEPEVYDLRNVVAGDPSPDGKGTLAVCRGIEVGHVFMLGTRYSEAMNATFLDENGKTQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +        R+  ++++A 
Sbjct: 442 VMGCYGIGITRILGAAIEQNYDARGIIWPASIAPFQVVICPVGYDRSNAVREEADRLHAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G+ FA  +L+G P +V+VG + + + K+E + R       ++ 
Sbjct: 502 LVAAGIDVMLDDRGERPGAMFADWELIGVPFRVVVGDRGLKEGKLEFQGRRDEAATAVAP 561

Query: 432 EEVINYASHRFS 443
            +V+     R +
Sbjct: 562 ADVLATLKARLA 573


>gi|172058202|ref|YP_001814662.1| threonyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
 gi|171990723|gb|ACB61645.1| threonyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
          Length = 646

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 169/443 (38%), Gaps = 33/443 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L  L E   RD      +L L         +G+  WLP G      V   I +++  
Sbjct: 233 KQHLHFLAEAKERDHRKLGKELDLF-FTSQDVGQGLPMWLPKGAAIRRTVERYIVDKELE 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L S +L+  SG +D Y  +M    + +++ ++  P +      I+++  +
Sbjct: 292 LGYEHVYTPVLGSVELYKTSGHWDHYQDDMFPKMEMDNEELVLRPMNCPHHMMIYKNEPR 351

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR+LP    ++    R E+      ++   +++ +     + P+  K  +  +      
Sbjct: 352 SYRDLPLRVAELGGMHRYEMSGALTGLQRVRYMVLNDGHTFVRPDQMKEEFKAIVHLIQE 411

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDFDDI 242
           ++   G+     R                  D  + + +  +    +          D++
Sbjct: 412 VYADFGITDYKFRLS--------------YRDPADKEKYFDNDAIWEMAQRELKETMDEL 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+
Sbjct: 458 ELPYFEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELTY 506

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           KG DG+DH   +     G +  +   +    +     +P  +AP ++ LI + +  +   
Sbjct: 507 KGNDGQDHRPVVLHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQVKLIPVSSVHE--- 561

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +I   L K G  V  D   E++G +   A +   P+ +++G K +   +V I+   
Sbjct: 562 DYAREIKTMLLKKGIRVETDFRDEKLGYRIREAQVNKVPVMLVLGDKEIEAREVNIRRYG 621

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +    + SLE+ ++      +N 
Sbjct: 622 SKDSSNASLEQFVSDLEQEIANR 644


>gi|152976959|ref|YP_001376476.1| threonyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025711|gb|ABS23481.1| threonyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 643

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 168/434 (38%), Gaps = 32/434 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           + +L+E   RD      +L L T    +  +G+  WLP G      +   I +++   G 
Sbjct: 235 MRMLEEAKERDHRKLGKELKLFTNN-QKVGQGLPLWLPKGATIRRIIERYIVDKEVSLGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L S +L+  SG ++ Y   M      +++ ++  P +      ++++ I SYR
Sbjct: 294 NHVYTPVLGSRELYETSGHWNHYRDGMFPSMQMDNEELVLRPMNCPHHMMVYKNDIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++    R E+      ++    +  +     + P+  K    ++    L ++ 
Sbjct: 354 ELPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEELKRVVNLTLEVYK 413

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISL 245
             GL++   R                  D  +T+ + + D M            D++   
Sbjct: 414 DFGLENYSFRLS--------------YRDPEDTKKYYADDEMWEKAQGMLKEAMDEMGLE 459

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  +L +++ +S   ++    F    ++      T+ G 
Sbjct: 460 YYEAEGEAAFYGPKLDV---QVRTALGKDETLSTVQLD----FLLPERF----ELTYVGE 508

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DGK H   +     G +  +   +    +     +P  +AP ++ +I +    QV  D  
Sbjct: 509 DGKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSP--QVHLDYA 564

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +K+   L + G  V  D   E+IG +   A +   P  ++VG   V+++ V ++      
Sbjct: 565 KKVQEELQRAGIRVEVDTREEKIGYKIREAQMQKIPYMLVVGDNEVAENGVNVRKYGEQK 624

Query: 426 REDMSLEEVINYAS 439
            E ++L+  ++   
Sbjct: 625 SETIALDAFVDMIK 638


>gi|170726837|ref|YP_001760863.1| threonyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
 gi|238688661|sp|B1KG61|SYT_SHEWM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169812184|gb|ACA86768.1| threonyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
          Length = 642

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 141/439 (32%), Gaps = 40/439 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + + + G+  W   G      +   IR++  +   
Sbjct: 233 LNRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSLFLELEKFIRQKLGQYTY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y + M    +  ++     P +      IF   +KSYR
Sbjct: 291 QEVKGPLMMDRVLWERSGHWDKYSEAMFT-TNSENREYAIKPMNCPGHVQIFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +   +         +
Sbjct: 350 DLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHVFC-TEDQVQQEVSACIKMVYDTY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G K I ++  + P                        D  D    +           
Sbjct: 409 ETFGFKDIVVKLSTRPEKR-----------------IGDDDMWDRAEEALKQALTANDIA 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I+    A Y    +     L D L    +     ++       G        AT+   
Sbjct: 452 YEILPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPGRLG--------ATYVAE 500

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D        +    +G++     ++   + GK   W   +    +++           D 
Sbjct: 501 DNSRQTPVMIHRAILGSLERFLGILIEEYAGKFPTWLAPMQAVVMNIT------DKQSDY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++   L + G     D   E+IG +     L   P  ++VG + + + +V ++ R   
Sbjct: 555 VDEVVNILKENGIRASKDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTRDGV 614

Query: 425 IREDMSLEEVINYASHRFS 443
               + + E  +    + S
Sbjct: 615 DLGKIQISEFASKIKEQIS 633


>gi|197286110|ref|YP_002151982.1| prolyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227357229|ref|ZP_03841586.1| prolyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
 gi|226701319|sp|B4F249|SYP_PROMH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194683597|emb|CAR44486.1| prolyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227162492|gb|EEI47481.1| prolyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
          Length = 571

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 144/430 (33%), Positives = 206/430 (47%), Gaps = 41/430 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAEI SH+LMLR GMI + + G+Y W+P G + L  +  I+REE
Sbjct: 1   MRTSHYLLSTLKETPADAEIVSHQLMLRAGMIRKLASGLYDWMPTGVRVLRKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G++E+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TDI R+
Sbjct: 61  MDNAGSLEISMPVVQPADLWQESGRWEQYGPELLRFTDRGERPFVLGPTHEEVVTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF ++ E  + +Y++M+ +
Sbjct: 121 EITSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHISQESLQETYDRMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  IF R+GL   P+ A++G IGG  SHEF VLAD+GE  +       D+    E     
Sbjct: 181 YSNIFTRIGLDFRPVLADTGSIGGSASHEFQVLADSGEDDIVF-STASDYAANIELAEAV 239

Query: 236 --------------NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                           D  +  ++  +VEQ+  P   T         +            
Sbjct: 240 MPATPRSPATEELRLVDTPNAKTIAELVEQFNLPIEKTVKTLIVHATEESGHKLVALLVR 299

Query: 282 IEVGHIFYFGTKYSLP-MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            +         K S+      F   +     V  G   +G + +   +I          +
Sbjct: 300 GDHELNEIKAEKCSIVASPLVFATEEEIRQAVNAGPGSLGPINLPLPIIIDRAVSVMSDF 359

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYA-------------RLSKVGCDV--FWDDMG 385
                        I     +       I                L K G +V   +    
Sbjct: 360 GAGANIDGKHYFGINWERDLPLAEMADIRNVVEGDPSPDGKGTLLIKRGIEVGHIF---- 415

Query: 386 EQIGSQFAVA 395
            Q+G +++ A
Sbjct: 416 -QLGKKYSEA 424



 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 113/191 (59%), Gaps = 3/191 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  + AT +  +G +  V
Sbjct: 380 PLAEMADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGKKYSEALKATVQNEEGHNQVV 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIWPD++APF+++++ +  H     ++  EK+YA 
Sbjct: 440 TMGCYGIGITRIVAAAIEQNHDARGIIWPDAIAPFQVAILPMNMHRSYRVKEVAEKLYAD 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV +DD  E+ G  FA  +L+G P  +++G + + + +VE K R +  +  +++
Sbjct: 500 LRAQGIDVLFDDRKERPGVMFADMELIGVPHTIVIGDRNLDNEQVEYKARRSDDKSLVNV 559

Query: 432 EEVINYASHRF 442
            +V+ +   + 
Sbjct: 560 NDVVAFIKEQL 570


>gi|187930129|ref|YP_001900616.1| prolyl-tRNA synthetase [Ralstonia pickettii 12J]
 gi|226701322|sp|B2UCU9|SYP_RALPJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|187727019|gb|ACD28184.1| prolyl-tRNA synthetase [Ralstonia pickettii 12J]
          Length = 574

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 119/233 (51%), Positives = 160/233 (68%), Gaps = 1/233 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   G+Y+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGLYTYMPVGLRVIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q  +LW E+GR+D  G E+LR  DR+++  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAVEVLMPVVQPGELWQETGRWDKMGDELLRFKDRHERDFVMQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KM+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAEGLKVSYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y RIF R GL+   + A++G IGG  SHEF V+ADTGE  +    D  D+   
Sbjct: 181 YTRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIIYCPD-SDYAAN 232



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 68/192 (35%), Positives = 107/192 (55%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D+ P+ K      RGIEVGH+F  GT+YS  M+ATF   +GK   +
Sbjct: 382 PEPEVYDLRNVVAGDASPDGKGTLAICRGIEVGHVFMLGTRYSEAMNATFLDENGKTQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +        R+  ++++A 
Sbjct: 442 VMGCYGIGITRILGAAIEQNYDARGIIWPASIAPFQVVICPVGYDRSDAVREEADRLHAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G+ FA  +L+G P +V+VG + + + K+E + R       ++ 
Sbjct: 502 LVAAGIDVMLDDRGERPGAMFADWELIGVPFRVVVGDRGLKEGKLEFQGRRDEAATAVAP 561

Query: 432 EEVINYASHRFS 443
            +V+     R +
Sbjct: 562 ADVLATLKARLA 573


>gi|91078076|ref|XP_971952.1| PREDICTED: similar to prolyl-tRNA synthetase [Tribolium castaneum]
          Length = 448

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 153/458 (33%), Positives = 237/458 (51%), Gaps = 50/458 (10%)

Query: 2   RRSKYFLPIL-----QENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNA 55
           R S+ F P+       E  R D    S +LML  G+I Q S G + +LPLG K+L+ +  
Sbjct: 8   RLSRLFQPVSVVPKNAEVKRHDITSKSQRLMLELGIIRQASPGCFHFLPLGVKSLEKLTR 67

Query: 56  IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
           ++ EE  + G  ++  PTL +A LW ++GR ++   E+ ++ DR+D++ I  PTHEE  +
Sbjct: 68  LVDEEMKKIGGQKIIFPTLTNAKLWEKTGRLETVSSELFQIKDRHDQSYILSPTHEEAAS 127

Query: 116 DIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           ++  S    SY++LP   YQI  K+RDE++PRFG+MR ++FLMKD YSFD   E +KH+Y
Sbjct: 128 NLLASLAPISYKHLPLKLYQITSKYRDEMKPRFGLMRGKQFLMKDMYSFDTDLETAKHTY 187

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           +++  SY RIF R+G+  + +   SG +GG+LSHE+   AD GE ++             
Sbjct: 188 DEICKSYDRIFRRIGIDFVKVVGCSGHMGGELSHEYHYKADVGEDKILTCNKCN------ 241

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                                Y+A ++V  E+   +          GIEVGH F  G KY
Sbjct: 242 ---------------------YSANTEVSGEEKCPNCGNTSVKIHLGIEVGHTFLLGEKY 280

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           S P++ATF    GK   +QMGSYG+G  R++AAVIE     + I WP  ++P+ + ++  
Sbjct: 281 SKPLNATFLNNHGKPDVLQMGSYGLGLSRILAAVIEVMSSEQEIRWPQILSPYSVIILPP 340

Query: 355 K--AHDQVCRD---ACEKIYAR------LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPL 402
           K  + ++         + +Y +      L      V  DD     IG +F  A   G+P 
Sbjct: 341 KSGSKEETHIKDSGLVDSLYEKIETTCNLQDN---VLIDDRTNFTIGRRFLEAKKNGYPF 397

Query: 403 QVIVGSKFVSDSKV-EIKHRLTGIREDMSLEEVINYAS 439
            V +G K V +  + EI +  T     +S  +++NY  
Sbjct: 398 IVTLGKKIVENPLLYEITNLKTNETLFLSENDLMNYLR 435


>gi|149927159|ref|ZP_01915416.1| prolyl-tRNA synthetase [Limnobacter sp. MED105]
 gi|149824098|gb|EDM83319.1| prolyl-tRNA synthetase [Limnobacter sp. MED105]
          Length = 586

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 169/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++FL  L+E P DAE+ SH+LM+R GMI + + GIY+++P+G +++  V  I+REE
Sbjct: 1   MRATQFFLNTLKEAPADAEVISHQLMMRAGMIKRLAGGIYTYMPVGLRSIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ESGR++ YG E+LR+ DR+D+  + GPTHEEV+TD+ R 
Sbjct: 61  MNRAGALELLMPAVQPAELWQESGRWEKYGPELLRMKDRHDRDYVIGPTHEEVITDVVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFGVMR REF+MKDAYSFD T E +  +Y+ M+ +
Sbjct: 121 EVKSYRQLPLNLYQIQTKFRDEIRPRFGVMRGREFVMKDAYSFDRTQEAALKTYDVMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL    + A++G IGG+ SHEF V+ADTGE  +       D+    E
Sbjct: 181 YRRIFTRLGLNFRAVNADTGSIGGNRSHEFHVIADTGEDAIAYC-PSSDYAANVE 234



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 4/196 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    SD+ N    D  P+ K V    RGIEVGH+FY GTKYS  + A F   +GK   +
Sbjct: 388 PEPEVSDIRNVVEGDPSPDGKGVLAMCRGIEVGHVFYLGTKYSEALQAKFLEENGKPAVI 447

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R++ A IE + D +GIIWP S+APF++ L  I        +   +K+Y  
Sbjct: 448 EMGCYGIGVTRILGAAIEQNFDDRGIIWPLSIAPFEVVLCPIGYKKSDEVKAQADKLYQM 507

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMS 430
           L   G DV  DD  E+ G  FA  +L+G PL+V +G + + + KVE + R     + D+ 
Sbjct: 508 LKDAGVDVMLDDRDERPGVMFADWELIGVPLRVTLGDRGLKEGKVEFQSRDGKVEKRDVE 567

Query: 431 LEEVINYASHRFSNNR 446
           + E+        ++ +
Sbjct: 568 VGEIFEQLCVELASRQ 583


>gi|299537247|ref|ZP_07050550.1| threonyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298727488|gb|EFI68060.1| threonyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 638

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 150/442 (33%), Gaps = 43/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           F+ + +   R+      +L L   M  + + G+  +L  GQ   + + + +R  Q +   
Sbjct: 234 FIFLEEAEKRNHRKLGKELSLF--MFSEEAPGMPFYLANGQILRNELESYLRHLQAKYDY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y   M      +D++    P +      IF++ + SYR
Sbjct: 292 GEVRTPLMMNQRLWEQSGHWDHYKDNM-YFTQVDDQSFALKPMNCPGHMLIFKNALHSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R E      G++R R F   DA+ F  TP+  +            ++
Sbjct: 351 DLPIRMAEFGQVHRHEFSGALNGLLRVRTFCQDDAHIF-ATPQQIEDEIALALKIIDEVY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           +  G         + P                           D    +     +++   
Sbjct: 410 NVFGFAYTI-ELSTRP-----------------DDYMGDLALWDQAEAALENVLNNLGIA 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
            +I     A Y    D+H   + D++  + + +   ++    F    K+      T+   
Sbjct: 452 YTINAGDGAFYGPKIDIH---IKDAIQRSHQCATVQLD----FQLPEKFD----LTYINE 500

Query: 306 DGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +     +    +     R +  +IE                            +  + 
Sbjct: 501 HNERVRPVVIHRAVFGSIDRFLGILIEHFGGAFPTWLAPQQVQVIGVA-------EAHQG 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++   L +    V  DD  E++G +   A L   P  V++G + V++  V ++    
Sbjct: 554 YAKQVVEALQQAEIRVQLDDRQEKLGKKIREAQLQKIPYIVVIGDREVANQTVAVRRHGQ 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
               D SL+++I   +      
Sbjct: 614 QNANDKSLQQLIEEVTAAIQQK 635


>gi|45387545|ref|NP_991118.1| probable prolyl-tRNA synthetase, mitochondrial [Danio rerio]
 gi|41350986|gb|AAH65673.1| Prolyl-tRNA synthetase (mitochondrial) [Danio rerio]
          Length = 477

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 148/448 (33%), Positives = 228/448 (50%), Gaps = 37/448 (8%)

Query: 4   SKYFLPI-LQE--NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           S+ F P  L+E  +  D    S +LM++TG+IH  + G + +LP+  ++L+ +  +I EE
Sbjct: 50  SRLFQPSNLREGQDGGDLTCRSQRLMVQTGLIHPSNPGCFYYLPVALRSLEKLVRLIDEE 109

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT-DIFR 119
            +  G  ++ +P L SA+LW +SGR++  GKEM RL DR++     GPTHEE +T     
Sbjct: 110 MHAIGGQKVDMPALCSAELWKKSGRWELMGKEMFRLLDRHNGEYCLGPTHEEAVTELFAS 169

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               SY+ LP   YQ+  KFRDE +P+FG++R REF MKD YSFD+  E + H+YN +  
Sbjct: 170 QTTMSYKKLPLLLYQVTRKFRDEQKPKFGLLRGREFYMKDMYSFDINEEAALHTYNSVCQ 229

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +Y RI  RL LK + ++A++G IGG LSHEF + AD GE ++    +             
Sbjct: 230 AYRRILDRLHLKWVQVQADTGNIGGTLSHEFQLPADIGEDKLLVCGNC------------ 277

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                       ++A     +    +         K   +RGIEVGH FY GTKYS    
Sbjct: 278 -----------GFSANI--ETMEPGQAKCSQCQTGKLTESRGIEVGHTFYLGTKYSQAFK 324

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--H 357
           A F  A       +MG +G+G  R++AA IE       I WP  +AP+++ ++  K    
Sbjct: 325 ALFVNASNVPAVAEMGCFGLGVTRILAASIEVMSTEDAIHWPGLIAPYQVCVLPPKKGSK 384

Query: 358 DQVCRDACEKIYARLSKV--GCD--VFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVS 412
                   E++   L          V  DD  +  IG +   A +LG+P  V+VG   + 
Sbjct: 385 AHEATQKAEELAQSLGNSLPNLRGEVVLDDRTQMTIGKRLKDAKILGYPFVVVVGQTALD 444

Query: 413 D-SKVEIKHRLTGIREDMSLEEVINYAS 439
           D +  E+  + +G    +S + +++  S
Sbjct: 445 DLASFEVVCQQSGETLFLSKDGLVDLLS 472


>gi|291613215|ref|YP_003523372.1| prolyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
 gi|291583327|gb|ADE10985.1| prolyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
          Length = 566

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 122/235 (51%), Positives = 168/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P +AE+ SH+LMLR G I + S G+Y+W+PLG + L  V A++REE
Sbjct: 1   MRVSQFFISTLKEAPSEAELPSHRLMLRAGYIRKLSSGLYTWMPLGLRVLRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++G IE+ +P +Q A+LW E+GR+D +G +ML++ DR+D    +GPTHEEV+TDI R 
Sbjct: 61  MNKSGGIELLMPAVQPAELWQETGRWDVFGPQMLKIKDRHDNLFCFGPTHEEVITDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF  + E  + +Y  M+ +
Sbjct: 121 EVKSYRQLPLNFYQIQTKFRDEVRPRFGVMRAREFVMKDAYSFHSSFESLEQTYRVMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL+   + A++G IGG  SHEF VLAD+GE  +    +  D+    E
Sbjct: 181 YTRIFTRLGLQFRAVAADTGAIGGSGSHEFHVLADSGEDALAFCPN-SDYAANVE 234



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 3/189 (1%)

Query: 257 AATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           +   D+ N    D+ P+ K      RGIEVGHIF   TKYS  + AT+   +GK   ++M
Sbjct: 378 SNVHDLRNVVAGDASPDGKGALELCRGIEVGHIFQLRTKYSEALQATYLDENGKAQVMEM 437

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLS 373
           G YGIG  R+VAA IE + D +GI  P  +APF++++  I     +  R+A E++YA L+
Sbjct: 438 GCYGIGVSRIVAAAIEQNFDERGIALPSGMAPFQVAIAPIGIKKSEAVRNAAEQLYAELT 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V  DD  E+ G  FA  +L+G P ++++G + + + KVE + R     + + L++
Sbjct: 498 AAGVEVLLDDRDERPGVMFADLELIGVPHRIVIGDRGLKEGKVEYQGRKDETAQSIPLQD 557

Query: 434 VINYASHRF 442
            +     + 
Sbjct: 558 AVKLVQSKL 566


>gi|313205743|ref|YP_004044920.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Riemerella
           anatipestifer DSM 15868]
 gi|312445059|gb|ADQ81414.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Riemerella
           anatipestifer DSM 15868]
 gi|315022861|gb|EFT35885.1| threonyl-tRNA synthetase [Riemerella anatipestifer RA-YM]
          Length = 641

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 157/441 (35%), Gaps = 39/441 (8%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      +L L T    +   G+  WLP G      + + + E Q + G
Sbjct: 229 YLERLEEAKRRDHRKLGKELGLFT-FSEKVGAGLPLWLPKGAALRKKLESFLSEAQRKGG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +  P + + +L+  SG Y+ YG +  +        +  +  P +     +++++   
Sbjct: 288 YEFVMTPHIGNIELYKTSGHYEKYGADSFQPIKTPHVGEEFLLKPMNCPHHCEVYKAQQW 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP  + +    +R E      G+ R R F   DA+ F  TP+     + K+    L
Sbjct: 348 SYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFC-TPDQLLEEFEKVIDLVL 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  LG +    +                  D      +   +       S        
Sbjct: 407 YVFKSLGFEDFIAQVSLR--------------DKENRAKYIGSEENWEKAESAIITAAKN 452

Query: 243 ISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             LN++VE    A Y    D     + D+L  + ++    ++                 T
Sbjct: 453 KGLNTVVEYGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERFDLT 501

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G+D + H    +     G+M    A++  +  G   +W             +    + 
Sbjct: 502 YVGSDNERHRPIMIHRAPFGSMERFIAILIENTAGDFPLW------LNPDQYILLPISEK 555

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   L         D+  E+ G +   A++   P  +IVG     +  V ++ 
Sbjct: 556 YTDYAKKVSQLLENHDICGLVDERNEKTGKKIRDAEMKKIPFMLIVGENEAGNQTVSVRK 615

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R  G   +MS+E  + Y  + 
Sbjct: 616 RGEGDLGEMSIESFVEYFKNE 636


>gi|308048689|ref|YP_003912255.1| prolyl-tRNA synthetase [Ferrimonas balearica DSM 9799]
 gi|307630879|gb|ADN75181.1| prolyl-tRNA synthetase [Ferrimonas balearica DSM 9799]
          Length = 570

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 123/237 (51%), Positives = 158/237 (66%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +  ++E P DAEI SH+LM+R GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQTLISTMKETPSDAEIVSHQLMMRAGMIRKLAAGLYTWLPSGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E  +P +Q ADLW E+GR+D  G EM RL DR+D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNRAGAVETLMPVVQPADLWQETGRWDDMGAEMARLKDRHDRDFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFGVMR+REFLMKDAYSF L  E    +Y  M+ +
Sbjct: 121 EIKSYKQLPINLYQIQTKFRDERRPRFGVMRAREFLMKDAYSFHLDQETMDETYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RI  R+GL   P+ A++G IGG  SHEF VLA +GE  +       D+    E  
Sbjct: 181 YCRILERMGLAYRPVLADTGAIGGSHSHEFQVLAQSGEDAIAY-STESDYAANIEKA 236



 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +        +D+ N    D           ARGIEVGHIF  GTKYS  M
Sbjct: 365 DGKHYFGINWERDVALPEVADLRNVVEGDLSPCGNGTLKIARGIEVGHIFQLGTKYSESM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +AT    +GK   + MG YG+G  R+VAA IE +HD +GIIWPD++AP++++++ +    
Sbjct: 425 NATVLDPNGKATPLIMGCYGVGVSRIVAAAIEQNHDDRGIIWPDAIAPYQVAILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  EK+YA L+  G +V +DD  E+ G  FA  +L+G P  +++G + + D  VE
Sbjct: 485 SHRVAELAEKLYAELTAAGIEVLFDDRKERPGVMFADHELIGIPHTIVIGDRGIDDGNVE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K R TG + ++++++V+ +   +F+
Sbjct: 545 YKVRKTGEKSELAIDQVVEFFKGKFA 570


>gi|257875532|ref|ZP_05655185.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC20]
 gi|257809698|gb|EEV38518.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC20]
          Length = 646

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 162/441 (36%), Gaps = 30/441 (6%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++   G
Sbjct: 231 FIRLREEAKERDHRKLGKELELFM-LSPEVGAGLPFWLPKGATIRRTIERYIVDKEISLG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKS 124
              +  P + + DL+  SG +D Y ++M    D  D  M +  P +      ++++ I S
Sbjct: 290 YQHVYTPIMANVDLYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIHS 349

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    ++ +  R E       ++    +  +     + P+  K  + +     + +
Sbjct: 350 YRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKEEFKRTLDLMIGV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +    +     R                     + + F      +          D++  
Sbjct: 410 YEDFNITDYRFRLS-------------YRDPQNKDKYFDDDAMWENAQTMLKAAMDELEL 456

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  +L   + +S   ++    F    ++      T+ G
Sbjct: 457 DYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTYVG 505

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG++++  +  +  G +  +   +    +     +P  +AP + S+I +    +   D 
Sbjct: 506 EDGENNHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQASIIPVSV--EAHSDY 562

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +I  RL   G  V  DD  E++G +   +     P Q++VG + V+D+ V I+   + 
Sbjct: 563 AYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKIPYQIVVGDQEVNDATVNIRRYGSK 622

Query: 425 IREDMSLEEVINYASHRFSNN 445
             +   L   ++  +    N 
Sbjct: 623 ETQVEELNLFVDAMAAEVKNY 643


>gi|39996560|ref|NP_952511.1| prolyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|81832056|sp|Q74D59|SYP_GEOSL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|39983441|gb|AAR34834.1| prolyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|298505576|gb|ADI84299.1| prolyl-tRNA synthetase [Geobacter sulfurreducens KN400]
          Length = 570

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 127/237 (53%), Positives = 167/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR + YF+P L+E P DAE+ SH+LMLR GMI + + GIY++LPLG +++  V  I+REE
Sbjct: 1   MRYTNYFIPTLKETPSDAEVVSHQLMLRAGMIRKLAAGIYNYLPLGLRSIRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +P++Q A+LW ES R++ YGKE+LR  DR D     GPTHEEV+TDI R 
Sbjct: 61  MDRAGAIELLMPSVQPAELWQESTRWEQYGKELLRFKDRKDAEFCLGPTHEEVVTDIVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR +PF  YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+    S  SY+KM+ +
Sbjct: 121 EVKSYRQMPFNLYQIQAKFRDEIRPRFGLMRGREFIMKDAYSFDVDSSASDLSYDKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GLK   + A++G IGG  SHEF+VLAD+GE  +       ++    E  
Sbjct: 181 YRRIFQRCGLKFRAVEADTGSIGGSSSHEFMVLADSGEDAIVSCTQC-EYAANVEKA 236



 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 77/188 (40%), Positives = 106/188 (56%), Gaps = 3/188 (1%)

Query: 260 SDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           +D+ N    D  P  +       RGIEVGH+F  GTKYS  + AT+  ADGK+  + MG 
Sbjct: 379 ADIRNVVHGDPCPRCEAGHLELWRGIEVGHVFKLGTKYSEALRATYLDADGKEQIIFMGC 438

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R VAA IE +HD  GII+P  +APF   +  +   D     ACE +Y  L   G
Sbjct: 439 YGIGISRTVAACIEQNHDADGIIFPIPIAPFHCIVSAVNTKDAEVMAACESLYLDLRAAG 498

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V +DD  E+ G +F  ADL+G PL+++VGSK ++D KVE+K R TG  E + L   + 
Sbjct: 499 VEVLFDDRDERPGIKFKDADLIGIPLRLVVGSKNLADGKVELKSRRTGEVELLPLAGAVE 558

Query: 437 YASHRFSN 444
              +  + 
Sbjct: 559 KVRNIVAE 566


>gi|332678497|gb|AEE87626.1| Threonyl-tRNA synthetase [Francisella cf. novicida Fx1]
          Length = 634

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 144/442 (32%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L      + S GI  W   G +    V   +R   N+ G
Sbjct: 230 YLNMLEEAEKRDHRKIGKVLDLF--HFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG    Y + M       ++     P +      ++ + + SY
Sbjct: 288 CSEIRTPLIADFSLWQKSGHASKYAENMF-ATKSENRDFAIRPMNCPTCVQVYNTKLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R+E      G++R R F   D + F    +  +     +   +   
Sbjct: 347 RDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIFCTPEQVEEEVILMVQQCFEV- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++    P       E                   D          D    
Sbjct: 406 YKDFGFNDFAVKIALRPENRIGDDE-----------------TWDKSEQMLKNALDANNV 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              ++    A Y    + H   L D++  + +     ++       G        AT+  
Sbjct: 449 SYELLPGEGAFYGPKIEFH---LKDAIGRSWQCGTIQLDFSMPQRLG--------ATYID 497

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G+    V +    +G++     ++   + G   +W   V    + + N         D
Sbjct: 498 KNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLWLAPVQVAVMGISN------NQDD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C++++  L K G     D   E+IG +     LL  P  VI+G        + I+    
Sbjct: 552 YCKEVFTMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIRKHSG 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+++   +   +    
Sbjct: 612 EDLGQMSVDDFCAFLDKQIQAK 633


>gi|78189671|ref|YP_380009.1| threonyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
 gi|123729828|sp|Q3APV9|SYT_CHLCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78171870|gb|ABB28966.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chlorobium
           chlorochromatii CaD3]
          Length = 657

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 152/445 (34%), Gaps = 39/445 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L   +  +   G+  WLP G      + + +REEQ + G + 
Sbjct: 245 RIEEAKRRDHRKLGAELELFL-LSPEVGSGLPMWLPKGAIIRSELESFLREEQRKRGYVP 303

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHIK 123
           +  P + + +L+  SG Y  Y          +D+       +  P +      I+ S ++
Sbjct: 304 VYTPHIGNIELYKRSGHYPYYSDSQFPPLTYHDEDGKQEQYLLKPMNCPHHHLIYSSKMR 363

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +    +R E      G+ R+R F   D++ +    +              
Sbjct: 364 SYRDLPLRFTEFGTVYRHEQSGELNGLARARGFTQDDSHIYCRPDQLVDE-ICSAIELTQ 422

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDFDD 241
            +F  LG   +  R                  D      +  + +  +          + 
Sbjct: 423 FVFKTLGFAEVQTRLSLH--------------DPANQAKYGGTAEVWEQAEKDVQEAAER 468

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     I     + Y    D     + D++    ++    ++                 T
Sbjct: 469 MGVDYFIGIGEASFYGPKIDFI---VRDAIGRKWQLGTVQVDYVMP--------ERFDLT 517

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G+DG+ H   +              +   H      +P  +AP +++++ I    +  
Sbjct: 518 YVGSDGQKHRPVVIHRAPFGSMERFIGLLIEHT--AGNFPLWLAPVQVAVLPIA---EEN 572

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    +Y RL   G     D   E+I  +   A++   P  +++G K  ++ +V ++  
Sbjct: 573 HDYATTVYRRLLAAGIRAELDTRSEKINRKIRDAEMSKTPCMLVIGQKEQANGEVSLRRH 632

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
             G     + +E+I       +N +
Sbjct: 633 RQGDAGRFATDELIETLKQEIANRQ 657


>gi|309783049|ref|ZP_07677768.1| proline--tRNA ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918157|gb|EFP63835.1| proline--tRNA ligase [Ralstonia sp. 5_7_47FAA]
          Length = 574

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 119/233 (51%), Positives = 160/233 (68%), Gaps = 1/233 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   G+Y+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGLYTYMPVGLRVIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q  +LW E+GR+D  G E+LR  DR+++  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAVEVLMPVVQPGELWQETGRWDKMGDELLRFKDRHERDFVMQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KM+ +
Sbjct: 121 EIRSYKQLPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAEGLKVSYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y RIF R GL+   + A++G IGG  SHEF V+ADTGE  +    D  D+   
Sbjct: 181 YTRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIIYCPD-SDYAAN 232



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 68/192 (35%), Positives = 106/192 (55%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D  P+ K      RGIEVGH+F  GT+YS  M+ATF   +GK   +
Sbjct: 382 PEPEVYDLRNVVAGDPSPDGKGTLAVCRGIEVGHVFMLGTRYSEAMNATFLDENGKTQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +        R+  ++++A 
Sbjct: 442 VMGCYGIGITRILGAAIEQNYDARGIIWPASIAPFQVVICPVGYDRSDAVREEADRLHAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G+ FA  +L+G P +V+VG + + + K+E + R       ++ 
Sbjct: 502 LVAAGIDVMLDDRGERPGAMFADWELIGVPFRVVVGDRGLKEGKLEFQGRRDEAATAVAP 561

Query: 432 EEVINYASHRFS 443
            +V+     R +
Sbjct: 562 ADVLATLKARLA 573


>gi|77918296|ref|YP_356111.1| prolyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
 gi|114152225|sp|Q3A6R6|SYP_PELCD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|77544379|gb|ABA87941.1| prolyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
          Length = 571

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 121/237 (51%), Positives = 164/237 (69%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR + Y LP L+E P DAE+ SHKLMLR GMI + + GIY++LP G +++  V  I+REE
Sbjct: 1   MRYTDYLLPTLKETPSDAEVISHKLMLRAGMIRKLAAGIYNYLPFGLRSIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +  ++LW ESGR++ YGKE+LR  DR D +   GPTHEEV+TD+ R+
Sbjct: 61  MDRAGAMELLMPMVVPSELWEESGRWEHYGKELLRFTDRKDASFCLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  +Y KM+ +
Sbjct: 121 TVRSYRQLPLNLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDIDEAGADVAYEKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GLK   + A++G IGG  SHEF+VLA +GE  +       ++    E  
Sbjct: 181 YRRIFERCGLKFRAVEADTGNIGGSSSHEFMVLAASGEDAIVSCGQC-EYAANIEKA 236



 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 69/183 (37%), Positives = 100/183 (54%), Gaps = 2/183 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   +  D  P    V    RGIEVGH+F  GTKYS  + AT     G+D  + MG Y
Sbjct: 381 ADLRAAEAGDICPRCGGVLEIWRGIEVGHVFKLGTKYSAALGATVLDDQGQDRELFMGCY 440

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R VAA IE +HD  GI++P  +APF + +  +    +    A E +YA L  +G 
Sbjct: 441 GIGVGRTVAAAIEQNHDENGIVFPMPIAPFHVLVTVVNPRQEEVLAAAENLYAELQALGV 500

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ GS+F  ADL+G PL++ VG++ + ++ VE++ R  G R  + L E    
Sbjct: 501 EVLLDDRDERPGSKFKDADLIGIPLRLTVGARGLKENAVELQERAGGERRMLPLAEAAAL 560

Query: 438 ASH 440
              
Sbjct: 561 VRD 563


>gi|118497781|ref|YP_898831.1| threonyl-tRNA synthetase [Francisella tularensis subsp. novicida
           U112]
 gi|194323753|ref|ZP_03057529.1| threonyl-tRNA synthetase [Francisella tularensis subsp. novicida
           FTE]
 gi|208779844|ref|ZP_03247188.1| threonyl-tRNA synthetase [Francisella novicida FTG]
 gi|166223342|sp|A0Q762|SYT_FRATN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118423687|gb|ABK90077.1| threonyl-tRNA synthetase [Francisella novicida U112]
 gi|194322117|gb|EDX19599.1| threonyl-tRNA synthetase [Francisella tularensis subsp. novicida
           FTE]
 gi|208744299|gb|EDZ90599.1| threonyl-tRNA synthetase [Francisella novicida FTG]
          Length = 634

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 144/442 (32%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L      + S GI  W   G +    V   +R   N+ G
Sbjct: 230 YLNMLEEAEKRDHRKIGKVLDLF--HFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG    Y + M       ++     P +      ++ + + SY
Sbjct: 288 CSEIRTPLIADFSLWQKSGHASKYAENMF-ATKSENRDFAIRPMNCPTCVQVYNTKLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R+E      G++R R F   D + F    +  +     +   +   
Sbjct: 347 RDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIFCTPEQVEEEVILMVQQCFEV- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++    P       E                   D          D    
Sbjct: 406 YKDFGFNDFAVKIALRPENRIGDDE-----------------TWDKSEQMLKNALDANNV 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              ++    A Y    + H   L D++  + +     ++       G        AT+  
Sbjct: 449 SYELLPGEGAFYGPKIEFH---LKDAIGRSWQCGTIQLDFSMPQRLG--------ATYID 497

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G+    V +    +G++     ++   + G   +W   V    + + N         D
Sbjct: 498 KNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLWLAPVQVAVMGISN------NQDD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C++++  L K G     D   E+IG +     LL  P  VI+G        + I+    
Sbjct: 552 YCKEVFTMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIRKHSG 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+++   +   +    
Sbjct: 612 EDLGQMSVDDFCAFLDKQIQAK 633


>gi|325972697|ref|YP_004248888.1| threonyl-tRNA synthetase [Spirochaeta sp. Buddy]
 gi|324027935|gb|ADY14694.1| threonyl-tRNA synthetase [Spirochaeta sp. Buddy]
          Length = 581

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 137/448 (30%), Gaps = 41/448 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L++   RD      +L L +    +   G+  W P+G +   ++    R E   
Sbjct: 171 RLYLQHLEDVEKRDHRKLGKELDLFSLH-EEAGPGLVYWHPMGARIRQSIENFWRSEHYA 229

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y   M    + +       P +      I+++   
Sbjct: 230 NGYEMVYTPHIGRSWLWETSGHLDFYKDGMYPPMEMDKSDYYVKPMNCPFHIMIYKNSKH 289

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + ++   +R E      G+MR R F   DA+ F    + +            
Sbjct: 290 SYRDLPCRWAELGTVYRYEKAGAMHGLMRVRGFTQDDAHLFVTPDQMNDEILE------- 342

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                       +R     +      E      T   +             +        
Sbjct: 343 -----------VLRFSLHMLHSFGFTEINAYLSTKPEKSVGDPARWAAATEALRQAIVAE 391

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A Y    D+   K+ D++    ++S    +                 TF
Sbjct: 392 GLSYEIDEGGGAFYGPKIDL---KIKDAIGREWQLSTVQFDFNEP--------ERFDMTF 440

Query: 303 KGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              DG +    M    +     R    +IE                            + 
Sbjct: 441 VDKDGVEKRPYMIHRALLGSIERFFGVLIEHYAGAFPPWLSPEQIKLIPVG-------EN 493

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  + +  RL K G  V  D   +++ ++   A  L  P  VI+G +   + +V ++ 
Sbjct: 494 FFDYAKDLEKRLRKEGFRVSADLGDDRMNAKIRNAQQLKIPYMVIIGEREAQNDQVSVRL 553

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPV 448
           R       +S +  I     +  +   +
Sbjct: 554 RTGKQENGLSTQAFIEMVKQKVESKEQL 581


>gi|313902061|ref|ZP_07835474.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467670|gb|EFR63171.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 638

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 155/442 (35%), Gaps = 41/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L      + + G   W P G      +    RE Q R G 
Sbjct: 232 LQRLEEARRRDHRKLGPELDLF--HFEEVAPGYAFWHPKGATVYGLLEQFSRELQARYGY 289

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +   DLW  SG ++ Y   M  L +R D      P +      ++RS I+SYR
Sbjct: 290 QEVRTPEILKVDLWHRSGHWEHYRDNMF-LIEREDALFGVKPMNCPGHCLLYRSRIRSYR 348

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R E      G++R R F   DA+   +  +  +    ++      I+
Sbjct: 349 DLPLRLAEYGRLARFERSGTLHGLLRVRGFEQDDAH-LFVREDQIEEEIGRVLELVDTIY 407

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G+      A                  T   +        +    +     +     
Sbjct: 408 GTFGMPYEIKLA------------------TRPEKFMGDPALWERAEAALARALEAAGRD 449

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
            ++     A Y    D +   + DSL    + +   ++    F    ++      T+  A
Sbjct: 450 YTLAPGDGAFYGPKLDFY---VIDSLGRKWQTATVQLD----FQMPIRFD----LTYVDA 498

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            G++     +    +G++     ++    +     +P  +AP ++ ++ +        D 
Sbjct: 499 AGQEQRPVMIHRAIMGSLERFIGILI---EHYAGAFPVWLAPVQVRVLPVSDRHH---DY 552

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  RL   G  V  D   E++G +   A +   P  ++VG +   + +V ++ R  G
Sbjct: 553 ARRVEERLRAAGLRVEVDARDEKLGYKIRQAQVEKVPYMLVVGDREAQEGQVAVRSRDRG 612

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                SLE+ +   + + +  +
Sbjct: 613 DLGSQSLEDFVRLITEKVAQRQ 634


>gi|257865905|ref|ZP_05645558.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257872238|ref|ZP_05651891.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257799839|gb|EEV28891.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257806402|gb|EEV35224.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC10]
          Length = 646

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 162/441 (36%), Gaps = 30/441 (6%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++   G
Sbjct: 231 FIRLREEAKERDHRKLGKELELFM-LSPEVGAGLPFWLPKGATIRRTIERYIVDKEISLG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKS 124
              +  P + + DL+  SG +D Y ++M    D  D  M +  P +      ++++ I S
Sbjct: 290 YQHVYTPIMANVDLYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIHS 349

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    ++ +  R E       ++    +  +     + P+  K  + +     + +
Sbjct: 350 YRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKEEFKRTLDLMIGV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +    +     R                     + + F      +          D++  
Sbjct: 410 YEDFNITDYRFRLS-------------YRDPQNKDKYFDDDAMWENAQTMLKAAMDELEL 456

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  +L   + +S   ++    F    ++      T+ G
Sbjct: 457 DYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTYVG 505

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG++++  +  +  G +  +   +    +     +P  +AP + S+I +    +   D 
Sbjct: 506 EDGENNHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQASIIPVSV--EAHSDY 562

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +I  RL   G  V  DD  E++G +   +     P Q++VG + V+D+ V I+   + 
Sbjct: 563 AYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKIPYQIVVGDQEVNDATVNIRRYGSK 622

Query: 425 IREDMSLEEVINYASHRFSNN 445
             +   L   ++  +    N 
Sbjct: 623 ETQVEELNLFVDAMAAEVKNY 643


>gi|86131542|ref|ZP_01050140.1| Threonyl-tRNA synthetase [Dokdonia donghaensis MED134]
 gi|85817987|gb|EAQ39155.1| Threonyl-tRNA synthetase [Dokdonia donghaensis MED134]
          Length = 647

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 152/447 (34%), Gaps = 41/447 (9%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      +L L T    +  +G+  WLP G    + +   ++  Q +
Sbjct: 229 KQYLELLEEAKKRDHRKLGKELELFT-FSQRVGQGLPLWLPKGAALRERLENFLKAAQKK 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   +  P +   +L+  SG Y  YG +  +        +  +  P +     +I+ S 
Sbjct: 288 QGYEMVVSPHIGQKELYETSGHYAKYGADSFQPIQTPNEGEEFLLKPMNCPHHCEIYNSR 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SY+ LP  F +    +R E      G+ R R F   DA+ F  TP+     + K+   
Sbjct: 348 PWSYKELPKRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPDQLDEEFMKVIDL 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L +F  LG +    +                  D      +  +D       +   +  
Sbjct: 407 VLYVFGSLGFEDFTAQVSLR--------------DPENPDKYIGEDENWVKAENAILNAA 452

Query: 241 DIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLP 297
               LN +VE    A Y    D     + D+L  + ++    ++      F    K S  
Sbjct: 453 KAKGLNYVVETGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLPERFELQYKGSDN 509

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                         V +     G+M    A++     G   +W        ++L      
Sbjct: 510 E---------MHRPVMIHRAPFGSMERFVAILLEHTGGNFPLWLMPQQATILTL------ 554

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +      + +   L         D+ GE +G +   A++   P  +I+G +   D  + 
Sbjct: 555 SEKYEKYAQNVLNLLENHEIRALIDNRGETMGKKIREAEMQKLPFMLIIGEQEEKDGTIS 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           ++         M+++      S   ++
Sbjct: 615 VRRHGGEDLGSMTIDAFAKIVSTEIAS 641


>gi|256828741|ref|YP_003157469.1| prolyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
 gi|256577917|gb|ACU89053.1| prolyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
          Length = 580

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 128/237 (54%), Positives = 167/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK+++P L+E P +AE+ SHKL+LR GMI + + GIY+++PLG +A++ V  I+REE
Sbjct: 1   MLFSKFYVPTLKETPAEAEVISHKLLLRAGMIRKLTSGIYTYMPLGLRAINKVANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+S+P +Q ADLW ESGR+D YGKE+LRL DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQEISMPMVQPADLWQESGRWDFYGKELLRLKDRHGRDYCLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD   EG   SY  M+ +
Sbjct: 121 EVRSYRQLPINLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDKDDEGVNASYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y R+F RLGL+   + A+SG IGG  SHEF+VLADTGE  +        +    E  
Sbjct: 181 YTRVFTRLGLEFRAVSADSGAIGGSFSHEFMVLADTGEDTLAVCTSCS-YAANLEKA 236



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/183 (37%), Positives = 107/183 (58%), Gaps = 2/183 (1%)

Query: 253 TAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A     +D+ +  L D  P         +GIEVGH+F  GTKYS  M+ATF   +GK+ 
Sbjct: 379 DAAPTGYADLRSITLDDPCPACGGSLTMPKGIEVGHVFKLGTKYSKSMNATFLDENGKEQ 438

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MG YGIG  RVVAA IE ++D  G+I+P S+APF+I+++ +   D+       +I+ 
Sbjct: 439 VIIMGCYGIGVSRVVAACIEQNNDANGMIFPPSIAPFEITILAMSTKDEKVMAKGREIHD 498

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G D  +DD  E+ G +F  ADLLG P+Q+++G K +    +E+K+R TG + ++ 
Sbjct: 499 WLESQGIDTLFDDRDERPGVKFNEADLLGSPMQIVIGGKGLEKGVLEVKNRKTGEKRELP 558

Query: 431 LEE 433
           + +
Sbjct: 559 VAD 561


>gi|260548877|ref|ZP_05823099.1| prolyl-tRNA synthetase [Acinetobacter sp. RUH2624]
 gi|260408045|gb|EEX01516.1| prolyl-tRNA synthetase [Acinetobacter sp. RUH2624]
          Length = 571

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 127/253 (50%), Positives = 173/253 (68%), Gaps = 1/253 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+D   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHDNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +       D+    E  +  
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLASSGEDDIAF-STESDYAANVEMAEAV 239

Query: 241 DIISLNSIVEQWT 253
            +    +  +++ 
Sbjct: 240 LVGERAAPAQEFK 252



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/192 (38%), Positives = 104/192 (54%), Gaps = 3/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A      D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G DGK
Sbjct: 379 ERDAQIIEIFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGEDGK 438

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              V MG YGIG  RVVAA IE ++D KGIIWP ++APF+I+++ + A       +A E 
Sbjct: 439 PFTVTMGCYGIGVTRVVAAAIEQNYDDKGIIWPQAIAPFEIAIVPMNAHKSPRTLEAAEA 498

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R      
Sbjct: 499 LYAELQAQGFDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDAEAS 558

Query: 428 DMSLEEVINYAS 439
           +++ EE++   +
Sbjct: 559 NLTKEELLAKLA 570


>gi|28871133|ref|NP_793752.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|81840044|sp|Q87Y24|SYP_PSESM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28854383|gb|AAO57447.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 571

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 121/270 (44%), Positives = 174/270 (64%), Gaps = 10/270 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MNAVGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADNASLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F RLGLK  P+ A++G IGG  SHEF VLA++GE  +    +  D+    E  +  
Sbjct: 181 YSNVFSRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVF-SNGSDYAANIEKAEA- 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                   V +  A  AAT ++      ++
Sbjct: 239 --------VPREKARAAATEELRLVDTPNA 260



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 111/207 (53%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGQGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   R  
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGRVK 570


>gi|254373138|ref|ZP_04988627.1| threonine-tRNA ligase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570865|gb|EDN36519.1| threonine-tRNA ligase [Francisella novicida GA99-3549]
          Length = 634

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 144/442 (32%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L      + S GI  W   G +    V   +R   N+ G
Sbjct: 230 YLNMLEEAEKRDHRKIGKVLDLF--HFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG    Y + M       ++     P +      ++ + + SY
Sbjct: 288 CSEIRTPLIADFSLWQKSGHASKYAENMF-ATKSENRDFAIRPMNCPTCVQVYNTKLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R+E      G++R R F   D + F    +  +     +   +   
Sbjct: 347 RDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIFCTPEQVEEEVILMVQQCFEV- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++    P       E                   D          D    
Sbjct: 406 YKDFGFNDFAVKIALRPENRIGDDE-----------------TWDKSEQMLKNALDANNV 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              ++    A Y    + H   L D++  + +     ++       G        AT+  
Sbjct: 449 SYELLPGEGAFYGPKIEFH---LKDAIGRSWQCGTIQLDFSMPQRLG--------ATYID 497

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G+    V +    +G++     ++   + G   +W   V    + + N         D
Sbjct: 498 KNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLWLAPVQVAVMGISN------NQDD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C++++  L K G     D   E+IG +     LL  P  VI+G        + I+    
Sbjct: 552 YCKEVFTMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIRKHSG 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+++   +   +    
Sbjct: 612 EDLGQMSVDDFCAFLDKQIQAK 633


>gi|149001905|ref|ZP_01826859.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147759714|gb|EDK66704.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
          Length = 435

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 156/444 (35%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 17  KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 74

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 75  ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 134

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 135 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 194

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 195 IDVYEDFNLTDYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 241

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 242 MGVDYFEAEGEAAFYGPKLDI---QIKTALGKEETLSTIQLD----FLLPERFD----LK 290

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG+DH   M   G+ +       I   +         +     +    I   ++  
Sbjct: 291 YIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 346

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++  +L   G     D+  E++  +   +     P Q+IVG K + D  V ++  
Sbjct: 347 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRY 406

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                + +S++  +       +N 
Sbjct: 407 GQKETQTVSVDNFVQAILADIANK 430


>gi|307132338|ref|YP_003884354.1| prolyl-tRNA synthetase [Dickeya dadantii 3937]
 gi|306529867|gb|ADM99797.1| prolyl-tRNA synthetase [Dickeya dadantii 3937]
          Length = 572

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 151/434 (34%), Positives = 209/434 (48%), Gaps = 49/434 (11%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQVTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y +IF R+ L   P++A++G IGG+ SHEF VLA +GE  +       D+    E     
Sbjct: 181 YSKIFSRMDLDFRPVQADTGSIGGNASHEFQVLASSGEDDIVF-STESDYAANIELAEAV 239

Query: 236 --------------NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                           D  +  ++  +VEQ+  P   T      K      E        
Sbjct: 240 APEHGLSAPTQAMTLVDTPNAKTIAELVEQFAVPVEKTVKTLLVKAT----EESGHKLVA 295

Query: 282 IEVGHIFYFGTKYSLP-----MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           + V          S          TF   +     V+ G   +G + +   V+       
Sbjct: 296 LLVRGDHELNEVKSEKLELVASPLTFATEEEIRATVKAGPGSLGPVNLPVPVVVDRTVAA 355

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA-------------RLSKVGCDV--FW 381
              +             I             I                L K G +V   +
Sbjct: 356 MSDFSAGANIDGKHYFGINWERDTALPQVADIRNVVEGDRSPDGKGTLLIKRGIEVGHIF 415

Query: 382 DDMGEQIGSQFAVA 395
                Q+G +++ A
Sbjct: 416 -----QLGKKYSEA 424



 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 70/186 (37%), Positives = 111/186 (59%), Gaps = 3/186 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  + AT +G DG++  + MG 
Sbjct: 384 VADIRNVVEGDRSPDGKGTLLIKRGIEVGHIFQLGKKYSEALKATVQGEDGRNQTLTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKV 375
           YGIG  RV+AA IE +HD +GIIWPD++APF+++++ +  H     ++  E IY +L   
Sbjct: 444 YGIGVTRVIAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVQEVAEGIYQQLRAN 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P  +++G + + + ++E KHR  G +E +   +++
Sbjct: 504 GVDVLLDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDEIEYKHRRKGEKEMIKAGDIV 563

Query: 436 NYASHR 441
            +   +
Sbjct: 564 EFLLSQ 569


>gi|297568238|ref|YP_003689582.1| prolyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924153|gb|ADH84963.1| prolyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
          Length = 576

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 125/240 (52%), Positives = 163/240 (67%), Gaps = 1/240 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  LP L+E+P +AE+ SHKLMLR G I + + G+YS+LPLG  A+  V  I+REE
Sbjct: 1   MRFSQLLLPTLKEDPAEAEVISHKLMLRGGFIRKLTAGVYSYLPLGLAAIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q ADLW ESGR++ YG E+LR  DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQELLLPMVQPADLWRESGRWEKYGPELLRFKDRHQRESCLGPTHEEVITDLVRM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKD YSFDL   G++ +Y KM+ +
Sbjct: 121 NIHSYRQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDGYSFDLDEAGAELTYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL    + A++G IGG  SHEF+VLA TGE  V   +   D+    E    +
Sbjct: 181 YQRIFSRCGLAFRAVEADTGTIGGSFSHEFMVLAATGEDVVVICQHC-DYAANLEKATAN 239



 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 67/185 (36%), Positives = 101/185 (54%), Gaps = 2/185 (1%)

Query: 261 DVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+      D  P    +    RGIEVGHIF  GT YS  ++ATF    G+  +  MG +G
Sbjct: 381 DIRMVNEDDRCPRCGGRLALTRGIEVGHIFKLGTNYSEALNATFLDDQGQSRHFVMGCFG 440

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R VAA IE +HD  G+I+P  +APF++ L+N+   D+V     E++Y  L+  G +
Sbjct: 441 IGVSRTVAAAIEQNHDRDGMIFPLPIAPFQVILLNLTPKDEVISAEAERLYQALTADGIE 500

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ GS+F  ADL+G P++++VG +F +D  +EI+ R  G   + +        
Sbjct: 501 VLLDDRDERPGSKFKDADLIGIPIRLMVGKRFKNDGLLEIRTRADGQTSEATPAAAEAVI 560

Query: 439 SHRFS 443
               +
Sbjct: 561 KEMVA 565


>gi|313680219|ref|YP_004057958.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Oceanithermus
           profundus DSM 14977]
 gi|313152934|gb|ADR36785.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Oceanithermus
           profundus DSM 14977]
          Length = 649

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 96/444 (21%), Positives = 164/444 (36%), Gaps = 38/444 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y   + +   RD      +L L    I     KG+  WLP G    + + A +R+EQ + 
Sbjct: 237 YLWQLEEAKKRDHRRLGRQLELF--HIDPMVGKGLVLWLPKGNVLREELVAFMRDEQIKR 294

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIK 123
           G   ++ P + S +L+  SG Y  Y +      +  D    +  P +      I+    +
Sbjct: 295 GYQLVTTPHIGSLELYKTSGHYPYYAESQFPPMELEDGEAYLLKPMNCPHHVRIYAMRPR 354

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    +    +R E      G+ R R F   DA+ F  TPE  K  +  +    L
Sbjct: 355 SYRELPLRLAEFGTVYRFEQSGELHGLTRVRGFTQDDAHIFC-TPEQVKEEFLGVLDLTL 413

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           ++F  LGL     R              I + D G  +     +             D+ 
Sbjct: 414 KVFRTLGLSDFRAR--------------IGVRDPGSDKYVGDAEHWAVAERQIQEACDEA 459

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +I E   A Y    D     + D L    ++    ++                  +
Sbjct: 460 GLDYTIEEGDAAFYGPKLDF---VVKDVLSREWQLGTIQVDYNLP--------ERFDIGY 508

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           KGADG++H    +     G++     ++    +     +P  +AP ++ ++ I       
Sbjct: 509 KGADGEEHRPVMIHRAPFGSLERFIGILI---EHFAGEFPLWLAPVQVVVVPITDRHH-- 563

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   K+ A L   G  V  DD  E++ ++   A+    P+ ++VG K   +  V ++ R
Sbjct: 564 -DYARKVRAELEAAGLRVEVDDRPERMNAKIRDAETQKVPVILVVGDKETEEGTVAVRDR 622

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            TG R   +L EV+   + R    
Sbjct: 623 RTGERTTRALSEVVRDLAERVRTR 646


>gi|134294675|ref|YP_001118410.1| prolyl-tRNA synthetase [Burkholderia vietnamiensis G4]
 gi|166980110|sp|A4JBC2|SYP_BURVG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|134137832|gb|ABO53575.1| prolyl-tRNA synthetase [Burkholderia vietnamiensis G4]
          Length = 578

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 137/288 (47%), Positives = 183/288 (63%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGALELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REFLMKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFLMKDAYSFDKDAAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +       +F    E  +  
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYCPT-SEFAANIEAAEAL 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
               +  +    +E+   P  A  +   E L   L    +      + 
Sbjct: 240 PLIAERAAPAQAMEKVATPGKAKCEAVAELLAIPLERTIKSIVLATDN 287



 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/192 (38%), Positives = 107/192 (55%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPDVADVRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YG+G  R++ A IE + D KGIIWP+S+APF++ L  +     ++ R+A +K+YA 
Sbjct: 442 LMGCYGVGVTRILGAAIEQNFDDKGIIWPESIAPFELVLCPMGYDRSEMVREAADKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D KVE + R       +  
Sbjct: 502 LTAAGVDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKVEYQGRRDAEATLLPA 561

Query: 432 EEVINYASHRFS 443
           +      + +  
Sbjct: 562 DAAAATVTEKIR 573


>gi|302187169|ref|ZP_07263842.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. syringae 642]
          Length = 571

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 117/237 (49%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL D +++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDLHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y++M ++
Sbjct: 121 ELNSYKQLPINMYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E  
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSD-GSDYAANIEKA 236



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+LI ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALIPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 EAVREATDKLYADLTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++  V+++   + +
Sbjct: 544 EYKSRTESQPQAIAVAGVLSFIQGKVN 570


>gi|329298700|ref|ZP_08256036.1| prolyl-tRNA synthetase [Plautia stali symbiont]
          Length = 572

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 121/237 (51%), Positives = 164/237 (69%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPSDAEVISHQLMLRAGMIRKLASGLYTWLPTGIRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR+ DR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWEESGRWEQYGPELLRIKDRHERPFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNVYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL    ++A++G IGG  SHEF VLA +GE  V       D+    E  
Sbjct: 181 YSQSFSRMGLDFRAVQADTGSIGGSGSHEFQVLAQSGEDDVIF-SSESDYAANIEKA 236



 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/193 (35%), Positives = 110/193 (56%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A  +G DG++  +
Sbjct: 380 PETRVEDIRNVVEGDPSPDGKGMLMIKRGIEVGHIFQLGTKYSDAMKAAVQGEDGRNQIM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWP ++APF+++++ +  H     ++  E++Y  
Sbjct: 440 TMGCYGIGITRVVAAAIEQNHDERGIIWPAALAPFEVAILPMNMHKSFRVKELAEQLYNE 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + + + ++E K R    ++ +  
Sbjct: 500 LRAKGIDVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNQEIEYKARAASEKQMIKQ 559

Query: 432 EEVINYASHRFSN 444
            +++++ S   + 
Sbjct: 560 HDIVDFLSRALNK 572


>gi|239907072|ref|YP_002953813.1| prolyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
 gi|259511592|sp|C4XTD0|SYP_DESMR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|239796938|dbj|BAH75927.1| prolyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
          Length = 575

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 133/237 (56%), Positives = 169/237 (71%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y+ P L+E P +AE+ SHKL+LR GMI + + GIY++LPLG KAL+NV  I+REE
Sbjct: 1   MRLSRYYAPTLKETPAEAEVISHKLLLRAGMIRKLTAGIYTYLPLGLKALNNVAKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q ADLW ESGR+D YG+E+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGALEILMPAVQPADLWKESGRWDFYGRELLRFVDRHDRESCLGPTHEEVVTDLVRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G+  SY  M+ +
Sbjct: 121 EIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDKDDSGADASYWGMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF RLGLK   + A+SG IGG  SHEF+VLADTGE  +       D+    E  
Sbjct: 181 YARIFKRLGLKFRAVAADSGAIGGSFSHEFMVLADTGEDTIVACPAC-DYGANVEKA 236



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 69/188 (36%), Positives = 106/188 (56%), Gaps = 2/188 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A   + +D+      D  P+        +GIEVGH+F  G KYS  ++ATF    GK
Sbjct: 372 GRDANVVSYTDLREVAPGDPCPKCGALLDFTKGIEVGHVFKLGLKYSKALNATFLDEAGK 431

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           + ++ MG YGIG  R+VA+ IE +HD  GI++P ++APF+ +LIN+   D+      ++I
Sbjct: 432 EQFMIMGCYGIGVSRIVASAIEQNHDDGGIVFPPTIAPFEAALINLSPKDETACAKADEI 491

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           YA L+  G +   DD  E+ G +F  ADL+G P+Q+ +G K ++   VE K R TG + +
Sbjct: 492 YAALTAAGIETLLDDRDERPGVKFKDADLMGHPIQLTLGGKGLARGIVETKDRRTGEKGE 551

Query: 429 MSLEEVIN 436
           + LE    
Sbjct: 552 LPLEGFFE 559


>gi|311069390|ref|YP_003974313.1| threonyl-tRNA synthetase [Bacillus atrophaeus 1942]
 gi|310869907|gb|ADP33382.1| threonyl-tRNA synthetase [Bacillus atrophaeus 1942]
          Length = 643

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 83/427 (19%), Positives = 156/427 (36%), Gaps = 33/427 (7%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L      +  +G+  WLP G      +   I +++   G   +  P
Sbjct: 241 AKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKELSLGYEHVYTP 299

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L S +L+  SG ++ Y   M    + +++ +   P +      I+++ I SYR LP   
Sbjct: 300 VLGSKELYETSGHWNHYQDGMFPPIELDNETLALRPMNCPHHMMIYKNDIHSYRELPIRI 359

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R E+     G+ R R   + DA+ F    +        +      ++   GL 
Sbjct: 360 AELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKDEFIRTVR-LIQDVYEDFGLN 418

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISLNSIVE 250
               R                  D  +T+ +   D M     S      D+I S     E
Sbjct: 419 DYTFRLS--------------YRDPEDTEKYFDDDEMWNKAQSMLKDAMDEIGSDYYEAE 464

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    DV   ++  ++ + + +S   ++    F    ++      T+ G DGK H
Sbjct: 465 GEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPERFD----LTYVGEDGKQH 513

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              +     G +  +   +    +      P  +AP +  +I +     V  D  +K+  
Sbjct: 514 RPVVIHR--GVVSTMERFVAFLIEEHKGALPTWLAPVQFQVIPVSP--SVHLDYAKKVQE 569

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           RL + G  V  D   E+IG +   A +   P  ++VG +   +  V ++       E +S
Sbjct: 570 RLQREGLRVEVDIRDEKIGYKIREAQMQKIPYMLVVGDQEAENGAVNVRKYGEQKSETIS 629

Query: 431 LEEVINY 437
           L++ +  
Sbjct: 630 LDDFVKK 636


>gi|312111641|ref|YP_003989957.1| prolyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
 gi|311216742|gb|ADP75346.1| prolyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
          Length = 567

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 122/235 (51%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G I Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQSFIPTLREVPADAEVKSHQLLLRAGFIRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++    GPTHEE++T + R 
Sbjct: 61  MNRAGAVELLMPALQPAELWQQSGRWYSYGPELMRLKDRHERNFALGPTHEEMITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ+KFRDE RPRFG++R REF+MKDAYSF  + E    +YNKM+ +
Sbjct: 121 EVKSYKRLPLTLYQIQVKFRDEKRPRFGLLRGREFIMKDAYSFHTSQESLDETYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL    + A+SG IGG  +HEF+VL++ GE  +  S    D+    E
Sbjct: 181 YSNIFRRCGLNFRAVIADSGAIGGKDTHEFMVLSEIGEDTIAYSD-ASDYAANIE 234



 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+ K      RGIEVGH+F  GT+YS  ++AT+   +G+   + 
Sbjct: 378 VSEYADLRFIQEGDPSPDGKGTIRFARGIEVGHVFKLGTRYSEALNATYLDENGRSQTMI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R+VAA+ E   D  G++WP +VAPF + LI   A  +  R   ++ Y +L 
Sbjct: 438 MGCYGIGVSRLVAAIAEQFADENGLVWPVAVAPFHVHLITANAKSEEQRQLADEWYEKLR 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V +DD  E+ G +FA +DL+G P++V VG +   +  VE+K R TG   ++ + E
Sbjct: 498 QAGLEVLYDDRPERAGVKFADSDLIGIPVRVTVGKR-AGEGVVEVKVRQTGESVEVPVHE 556

Query: 434 VINYASHRFS 443
           +I+       
Sbjct: 557 LIDTIQRLLQ 566


>gi|78357249|ref|YP_388698.1| prolyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|114152190|sp|Q30Z93|SYP_DESDG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78219654|gb|ABB39003.1| prolyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 574

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 128/266 (48%), Positives = 178/266 (66%), Gaps = 7/266 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S +++P L+E P DAE+ SHKL++R GMI + + GIY +LPLG ++++   +I+R+E
Sbjct: 1   MRWSNFYIPTLKEAPADAEVVSHKLLIRAGMIRKLTSGIYIYLPLGLRSIEKAASIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+ +P +Q ADLW ESGR+D YGKE+LR++DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MNSAGAQELLMPMVQPADLWQESGRWDFYGKELLRISDRHGRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD   +G   SY  M+ +
Sbjct: 121 EVRSYRQLPLNLYQIQTKFRDEIRPRFGLMRGREFMMKDAYSFDRDAQGLDLSYRAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R+GLK   + A+SG IGG  SHEF+VLA+TGE  +    D  D+    E     
Sbjct: 181 YMKIFSRMGLKFRAVEADSGSIGGSFSHEFMVLAETGEDTIAFCHDC-DYSANVER---- 235

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEK 266
               +   +++  AP A   +VH   
Sbjct: 236 --AEVVCTLDECDAPVAGVEEVHTPD 259



 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 5/195 (2%)

Query: 257 AATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           +  +D+      D  P         RGIEVGH+F  GTKYS  M   F   +GK+  + M
Sbjct: 378 SGYADLRMITDKDPCPRCSGTLELTRGIEVGHVFKLGTKYSEAMGCKFLDENGKEQVMLM 437

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  RVVAA IE + D  GI++P  +APF++ L+N+   +       +++Y  +  
Sbjct: 438 GCYGIGVSRVVAACIEQNSDENGIVFPPPIAPFEVLLLNLDGKNDDVNARVDELYGAVQA 497

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            GCDV  DD  E+ G +F  ADL+G P+Q++VG K ++   VE K R TG + ++ ++  
Sbjct: 498 AGCDVLMDDRNERPGVKFKDADLIGVPMQLVVGGKGLARGIVEAKDRRTGEKTELPVDGF 557

Query: 435 INYASHRFSNNRPVL 449
               +      R VL
Sbjct: 558 AQAFAAW---RRQVL 569


>gi|288905772|ref|YP_003430994.1| Threonyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|325978807|ref|YP_004288523.1| threonyl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732498|emb|CBI14070.1| Threonyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|325178735|emb|CBZ48779.1| threonyl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 648

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 157/445 (35%), Gaps = 33/445 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y     +   RD      +L L   MI  +  +G+  WLP G      +   I +++  +
Sbjct: 231 YLKQRQEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYIVDKEVAS 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIK 123
           G + +  P L S DL+  SG +D Y ++M    D  D +  +  P +      +++ H+ 
Sbjct: 289 GYLHVYTPPLASVDLYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVH 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    +I +  R E       ++    +  +     +TPE  +  + K     + 
Sbjct: 349 SYRELPIRIAEIGMMHRYEKSGALSGLQRVREMSLNDGHLFVTPEQIQEEFQKALQLIID 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    L     R                       + +   +  +          D++ 
Sbjct: 409 VYEDFNLTEYRFRLSLRD-------------PKDTHKYYDDDEMWENAQSMLKAALDEMG 455

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    D+   ++  +L   + +S   ++    F    ++      T+ 
Sbjct: 456 VEYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERF----GLTYI 504

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           GADG++H   M   G+ +       I   +         +          I   ++   D
Sbjct: 505 GADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQV----TVIPVSNEAHVD 560

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G  V  D+  E++  +   +     P Q+IVG K ++D  V ++   +
Sbjct: 561 YAWEVAKVLRDKGVRVDVDERNEKMQLKIRQSQTKKIPYQLIVGDKEMADKTVNVRRYGS 620

Query: 424 GIREDMSLEEVINYASHRFS-NNRP 447
                 +++E ++      +  +RP
Sbjct: 621 KQTHTEAIDEFVDNILADINRKSRP 645


>gi|306831875|ref|ZP_07465030.1| threonine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425801|gb|EFM28918.1| threonine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 648

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 157/445 (35%), Gaps = 33/445 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y     +   RD      +L L   MI  +  +G+  WLP G      +   I +++  +
Sbjct: 231 YLKQRQEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYIVDKEVAS 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIK 123
           G + +  P L S DL+  SG +D Y ++M    D  D +  +  P +      +++ H+ 
Sbjct: 289 GYLHVYTPPLASVDLYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVH 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    +I +  R E       ++    +  +     +TPE  +  + K     + 
Sbjct: 349 SYRELPIRIAEIGMMHRYEKSGALSGLQRVREMSLNDGHLFVTPEQIQEEFQKALQLIID 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    L     R                       + +   +  +          D++ 
Sbjct: 409 VYEDFNLTEYRFRLSLRD-------------PKDTHKYYDDDEMWENAQSMLKAALDEMG 455

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    D+   ++  +L   + +S   ++    F    ++      T+ 
Sbjct: 456 VDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERF----GLTYI 504

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           GADG++H   M   G+ +       I   +         +          I   ++   D
Sbjct: 505 GADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQV----TVIPVSNEAHVD 560

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G  V  D+  E++  +   +     P Q+IVG K ++D  V ++   +
Sbjct: 561 YAWEVAKVLRDKGVRVDVDERNEKMQLKIRQSQTKKIPYQLIVGDKEMADKTVNVRRYGS 620

Query: 424 GIREDMSLEEVINYASHRFS-NNRP 447
                 +++E ++      +  +RP
Sbjct: 621 KQTHTEAIDEFVDNILADINRKSRP 645


>gi|228469293|ref|ZP_04054319.1| threonyl-tRNA synthetase [Porphyromonas uenonis 60-3]
 gi|228309192|gb|EEK17794.1| threonyl-tRNA synthetase [Porphyromonas uenonis 60-3]
          Length = 650

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 155/443 (34%), Gaps = 37/443 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L      +  +G+  WLP G +    +   ++  Q R G
Sbjct: 234 YLALLEEAKKRDHRKIGKELELFA-FSQRVGQGLPLWLPRGTQLRLKLEDFLKRIQKRYG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             ++  P + + +L+  SG Y  YG +  +     +  +A +  P +     +I++    
Sbjct: 293 YQQVMTPHIGNVELYKTSGHYAKYGADSFQVITTPQEGEAFMLKPMNCPHHCEIYKLKPH 352

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +    +R E      G+ R R F   DA+ F   P+  K  + K+     
Sbjct: 353 SYRDLPVRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCR-PDQVKEEFLKVMEIIF 411

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            IF  L  ++   +                 + T  ++   S++  D    +      + 
Sbjct: 412 IIFRALDFENFEAQISLR-------------SQTDRSKYIGSEENWDRAEQAIIEACQEA 458

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    D     + D+L    ++    ++                  +
Sbjct: 459 GLPAHVEYDEAAFYGPKLDFM---VKDALGRRWQLGTIQVDYNLP--------ERFELEY 507

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D + H    +     G+M    AV+     GK  +W           + I    +  
Sbjct: 508 TGEDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LSPDQVVILPVSERF 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++ A LS+    V  DD  E++G +    +L   P  +IVG +  +D  V ++ +
Sbjct: 562 NDYAYEVAAALSEQDISVSVDDRNEKVGRKIRDNELKRIPYMLIVGEQEQADGTVSVRKQ 621

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
             G      +            +
Sbjct: 622 GEGDAGTEKISTFAERILKEIES 644


>gi|237749052|ref|ZP_04579532.1| prolyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
 gi|229380414|gb|EEO30505.1| prolyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
          Length = 587

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SHKLM+RTGMI +   GIY+++P+G + +  +  IIREE
Sbjct: 9   MRASQFFISTLKEAPADAEIISHKLMVRTGMIRRLGSGIYAYMPMGLRVIHKIENIIREE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR+  YG E+LR+ DR+D+  I  PT EEV+TDI R+
Sbjct: 69  MNRAGAVELLMPLVQPAELWQETGRWQKYGPELLRIKDRHDRDFIIQPTSEEVITDIARN 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD   +G K SY  MF +
Sbjct: 129 VIKSYRQLPINFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDVDGLKKSYQIMFDA 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y++IF R GLK  P+ A++G IGG  SHEF V+A+TGE  +       ++    E
Sbjct: 189 YVKIFTRFGLKFRPVAADNGAIGGSGSHEFHVIAETGEDALVY-SRESEYAANME 242



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 106/190 (55%), Gaps = 3/190 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D  N    D  P+ K      RGIEVGH+F  GT+YS  M+A++   +GK   +QMG Y
Sbjct: 398 ADFRNVVEGDPSPDGKGTLAIQRGIEVGHVFQLGTRYSEDMNASYLDENGKPQLMQMGCY 457

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVG 376
           GIG  R+V A IE ++D KGIIWP S+APF++ L  +     +  +   +++Y  L + G
Sbjct: 458 GIGVTRIVGAAIEQNNDDKGIIWPTSIAPFEVVLCPLGYDRSEAVKKTADELYESLKQSG 517

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD GE+ G  F+  +L+G P ++++G + + D K+E + R       + + ++  
Sbjct: 518 IDVIMDDRGERPGVMFSDWELIGVPHRIVIGDRGLKDGKLEYQGRRDTEATAIPVGDMAQ 577

Query: 437 YASHRFSNNR 446
           +   + +  +
Sbjct: 578 FVIAKVAAEK 587


>gi|167564170|ref|ZP_02357086.1| prolyl-tRNA synthetase [Burkholderia oklahomensis EO147]
 gi|167571291|ref|ZP_02364165.1| prolyl-tRNA synthetase [Burkholderia oklahomensis C6786]
          Length = 578

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 149/401 (37%), Positives = 207/401 (51%), Gaps = 18/401 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNDFVIGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REFLMKDAYSFD   EG K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFLMKDAYSFDRDHEGLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-- 238
           Y+R+F R+GL+  P+ A++G IGG  SHEF V+ADTGE  +       DF    E  +  
Sbjct: 181 YVRVFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPT-SDFAANVEAAEAL 239

Query: 239 --FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG----HIFYF-- 290
                  +    +++   P  A  +   E L   L    +      +       I+    
Sbjct: 240 PLLASRAAPAEAMQKVATPGKAKCEAVAELLGIPLERTIKSIVLATDNDGAEPTIWLLML 299

Query: 291 --GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                 +   +A   G  G     +               +      K +          
Sbjct: 300 RGDHDLNEIKTAKLPGLAGYRFATETEIVDW--FGTPPGYLGPIGTKKPVRVIADRTVAN 357

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           +S   + A++     A       L +    V  D    + G
Sbjct: 358 MSDFVVGANEVDYHVAGVNWGRDLPE---PVIADIRNVKAG 395



 Score =  176 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 103/192 (53%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPVIADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSEAMGATFIDESGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D KGIIWP+++APF++ L  +        R+A +++YA 
Sbjct: 442 VMGCYGIGITRILGAAIEQNFDDKGIIWPEAIAPFEVVLCPMGYDRSDAVREAADQLYAA 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D KVE + R       +  
Sbjct: 502 LAAAGVDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKVEYQGRRDAEATLLPA 561

Query: 432 EEVINYASHRFS 443
           +        +  
Sbjct: 562 DSAAAVIVEKVR 573


>gi|120434969|ref|YP_860655.1| threonyl-tRNA synthetase [Gramella forsetii KT0803]
 gi|117577119|emb|CAL65588.1| threonyl-tRNA synthetase [Gramella forsetii KT0803]
          Length = 667

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 83/437 (18%), Positives = 157/437 (35%), Gaps = 38/437 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T    +  +G+  WLP G    + +   +++ Q + G   +  P
Sbjct: 255 AKKRDHRKLGKELELFT-FSQKVGQGLPLWLPKGAALRERLENFLKKAQKKAGYEMVVSP 313

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            + S +L+V SG Y  YG++  +        +  +  P +     +++ +   SYR+LP 
Sbjct: 314 HIGSKELYVTSGHYAKYGEDSFQPISTPNEGEEFMLKPMNCPHHCEMYNASSWSYRDLPK 373

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +    +R E      G+ R R F   DA+ F +  +  +  + K+    L +F  LG
Sbjct: 374 RFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCMPEQLDEE-FKKVIDLTLYVFSSLG 432

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            +    +                  D    + +   D       S   +  D   LN +V
Sbjct: 433 FEDFTAQVSLR--------------DPDNKEKYIGSDDAWEKAESAIINAADEKGLNYVV 478

Query: 250 E-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           E    A Y    D     + D+L  + ++    ++                 T+KG+D +
Sbjct: 479 ETGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERFDLTYKGSDNE 527

Query: 309 DHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            H    +     G+M    A++     G   +W        +SL       +      +K
Sbjct: 528 SHRPVMIHRAPFGSMERFIAILLEHTGGNFPLWLMPEQAIILSL------SEKYEKYSQK 581

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L         D+  E IG +   A++  +P  +IVG +   D  + ++    G   
Sbjct: 582 VLTLLENNEIRALADNRNETIGKKIREAEVNKYPYMLIVGEQEAKDGTISVRKHSEGDLG 641

Query: 428 DMSLEEVINYASHRFSN 444
            M +E+  N  +    +
Sbjct: 642 TMKIEDFANLINTEIDS 658


>gi|138894777|ref|YP_001125230.1| prolyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|166980126|sp|A4IMD1|SYP_GEOTN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|134266290|gb|ABO66485.1| Prolyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 567

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 120/235 (51%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G + Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQGFIPTLREVPADAEVKSHQLLLRAGFVRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++  + GPTHEE++T I R 
Sbjct: 61  MNRAGALELLMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFVLGPTHEEMITTIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +YNKM+ +
Sbjct: 121 EVKTYKRLPLILYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHTSQESLDETYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E
Sbjct: 181 YANIFRRCGLNFRAVIADSGAMGGKDTHEFMVLSDIGEDTIAYSD-ASDYAANIE 234



 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 72/191 (37%), Positives = 104/191 (54%), Gaps = 3/191 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             +  +D+   +  D  P+        RGIEVGH+F  GTKYS  M+A +   +G+   +
Sbjct: 377 AVSQYADLRFVQEGDPSPDGNGTIRFARGIEVGHVFKLGTKYSEAMNAVYLDENGRTQTM 436

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R+VAA+ E   D  G++WP SVAPF + L+   A     R   E+ Y +L
Sbjct: 437 IMGCYGIGVSRLVAAIAEQFADENGLVWPVSVAPFHVHLLTANAKSDEQRMLAEEWYEKL 496

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            + G DV +DD  E+ G +FA +DL+G PL+V VG +  S+  VE+K R TG   D+ + 
Sbjct: 497 GQAGFDVLYDDRPERAGVKFADSDLIGIPLRVTVGKR-ASEGVVEVKVRKTGETFDVPVG 555

Query: 433 EVINYASHRFS 443
           E+I        
Sbjct: 556 ELIETVRRLLQ 566


>gi|148269334|ref|YP_001243794.1| threonyl-tRNA synthetase [Thermotoga petrophila RKU-1]
 gi|166225512|sp|A5IJ45|SYT_THEP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|147734878|gb|ABQ46218.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Thermotoga
           petrophila RKU-1]
          Length = 640

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 90/443 (20%), Positives = 167/443 (37%), Gaps = 41/443 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D       L L   +  +++ G+  +LP G   L+ +    RE     G
Sbjct: 229 YLKFLEEAQRRDHRKLGPHLELFM-LNTEYAPGMPFFLPKGVVVLNELMRFSRELHRERG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +D Y + M    +++++     P +      +++S   SY
Sbjct: 288 YQEIFTPLIMNEQLWKISGHWDHYAENM-YFIEKDEERYAVKPMNCPGHILVYKSRTVSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F++     R E      G+MR R F   DA+ F  TP+  +     +      I
Sbjct: 347 RDLPLRFFEFGRVHRYERSGVLHGLMRVRSFTQDDAHIFC-TPDQIEEEILGVLDLINTI 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G                      V   T        +   +    +     +    
Sbjct: 406 YGQFGFTYR------------------VELSTMPEDHMGDEAIWEKATTALKNALERAGL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   + DS+    + +   ++               + T+ G
Sbjct: 448 SYKVNEGEGAFYGPKIDFH---IRDSIGREWQCATIQLDF--------MMPEKFNVTYIG 496

Query: 305 ADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D K+H  V +     G++     ++     G    W   +AP ++++I I    +   D
Sbjct: 497 PDNKEHRAVMIHRAIYGSLERFFGILIEHFAGAFPTW---LAPIQVAVIPI---SEKHND 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EKI  R+S+ G  VF+D+  E +G +   A     P  +I+G K +   K+ ++ R  
Sbjct: 551 GAEKIAKRISQEGFRVFFDNRRETLGYRIRQAQTQKIPYMIILGDKELESGKISVRTRTG 610

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
              +D+ LE  +    +   + +
Sbjct: 611 KEIKDVDLEHFVETLRNEVLSRK 633


>gi|257885297|ref|ZP_05664950.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|257821149|gb|EEV48283.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,501]
          Length = 645

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 161/448 (35%), Gaps = 34/448 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIRE 59
           +  K ++ + +E   RD      +L L   M+  +   G+  WLP G      +   I +
Sbjct: 224 KALKEYIRLREEAKERDHRKLGKELDLF--MVSPEVGSGLPFWLPKGATIRRTIERYIVD 281

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIF 118
           ++   G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++
Sbjct: 282 KEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPMDMGDGEMLVLRPMNCPHHMMVY 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           ++ I SYR LP    ++ +  R E       ++    +  +     + P+  K  + +  
Sbjct: 342 KNTIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTL 401

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NT 237
              + ++    +     R                  D   T  +   D M     +    
Sbjct: 402 ELMVAVYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKA 447

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D++       E   A Y    DV   ++  +L   + +S   ++    F    ++   
Sbjct: 448 AMDELELDYFEAEGEAAFYGPKLDV---QVKTALGTEETLSTIQLD----FLLPERFD-- 498

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              T+ G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +   
Sbjct: 499 --LTYVGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV- 554

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V 
Sbjct: 555 -DAHGDYAYEIKERLQTKGLRVEVDDRNEKMGYKIRASQTQKIPYQLVVGDKELEDATVN 613

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++   +       L   I+       N 
Sbjct: 614 VRRYGSKETAVEDLNIFIDAMEAEVKNY 641


>gi|332878463|ref|ZP_08446184.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683558|gb|EGJ56434.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 647

 Score =  246 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 152/445 (34%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L      +  KG+  WLP G      +   +++ Q R 
Sbjct: 231 EYLTLLEEAKKRDHRKIGKEMELFM-FSERVGKGLPMWLPKGTALRLRLEDFLKKIQKRY 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G  ++  P +   +L+V SG Y  YGK+  +       D+  +  P +     +I+    
Sbjct: 290 GYQQVMTPHIGGKNLYVTSGHYAHYGKDSFQPIHTPEADEEYMLKPMNCPHHCEIYAWKP 349

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    +R E      G+ R R F   DA+ F    +        M    
Sbjct: 350 RSYKDLPLRIAEFGTVYRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDEFIRVM---- 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                        ++   G +  D     I L D    + +   D +     +   +   
Sbjct: 406 -----------EIIQIIFGALNFDTFEAQISLRDPNNREKYIGSDEVWEEAENAIIEACK 454

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              LN+ VE    A Y    D     + D+L    ++    ++                 
Sbjct: 455 EKGLNAKVEYGEAAFYGPKLDFM---VKDALGRRWQLGTIQVDYNLP--------ERFKL 503

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G D + H    +     G+M    AV+     G   +W           + I    +
Sbjct: 504 EYTGEDNQKHRPVMIHRAPFGSMERFCAVLIEHTAGHFPLW------LTPDQVAILPISE 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  +K+ A   +       DD  E+IG +    ++   P  +IVG K  +D  V ++
Sbjct: 558 KFNDYAQKLCAYFDEQDVRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAADGTVSVR 617

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M  E+     +    N
Sbjct: 618 KQGEGDQGSMKFEDFAKKINEEVRN 642


>gi|251788479|ref|YP_003003200.1| prolyl-tRNA synthetase [Dickeya zeae Ech1591]
 gi|247537100|gb|ACT05721.1| prolyl-tRNA synthetase [Dickeya zeae Ech1591]
          Length = 572

 Score =  246 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 153/434 (35%), Positives = 209/434 (48%), Gaps = 49/434 (11%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ MF +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQVTYDAMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y +IF R+ L   P++A++G IGG+ SHEF VLA +GE  +       D+    E     
Sbjct: 181 YSKIFSRMDLDFRPVQADTGSIGGNASHEFQVLASSGEDDIVF-STASDYAANIELAEAV 239

Query: 236 --------------NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                           D  +  ++  +V Q+  P   T      K      E        
Sbjct: 240 APEHSLSAPTQPMTLVDTPNAKTIAELVAQFNLPVEKTVKTLLVKAT----EESGHKLVA 295

Query: 282 IEVGHIFYFGTKYSLP-----MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           + V          +          TF   D     V+ G   +G + +   VI       
Sbjct: 296 LLVRGDHELNEVKAEKLELVASPLTFATEDEIRAVVKAGPGSLGPVNMPVPVIIDRTVAV 355

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA-------------RLSKVGCDV--FW 381
              +             I     V       I                L K G +V   +
Sbjct: 356 MSDFSAGANIDGKHYFGINWERDVALPQVADIRNVVEGDRSPDGKGTLLIKRGIEVGHIF 415

Query: 382 DDMGEQIGSQFAVA 395
                Q+G +++ A
Sbjct: 416 -----QLGKKYSEA 424



 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/186 (37%), Positives = 110/186 (59%), Gaps = 3/186 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  + AT +G DG++  + MG 
Sbjct: 384 VADIRNVVEGDRSPDGKGTLLIKRGIEVGHIFQLGKKYSEALKATVQGEDGRNQTLTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKV 375
           YGIG  RV+AA IE +HD +GIIWPD++ PF+++++ +  H     ++  E IY +L   
Sbjct: 444 YGIGVTRVIAAAIEQNHDDRGIIWPDAITPFQVAILPMNMHKSFRVQEVAEGIYQQLRAN 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P  +++G + + + ++E KHR  G +E +   +++
Sbjct: 504 GIDVLLDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDEIEYKHRRKGEKEMIKAGDIV 563

Query: 436 NYASHR 441
            +   +
Sbjct: 564 EFLLSQ 569


>gi|320547252|ref|ZP_08041545.1| threonine--tRNA ligase [Streptococcus equinus ATCC 9812]
 gi|320448140|gb|EFW88890.1| threonine--tRNA ligase [Streptococcus equinus ATCC 9812]
          Length = 697

 Score =  246 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 155/445 (34%), Gaps = 33/445 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y     +   RD      +L L   MI  +  +G+  WLP G      +   I +++  +
Sbjct: 280 YLKQRQEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYIVDKEVAS 337

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIK 123
           G + +  P L S DL+  SG +D Y ++M    D  D +  +  P +      +++ H+ 
Sbjct: 338 GYLHVYTPPLASVDLYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVH 397

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    +I +  R E       ++    +  +     +TPE  +  + K     + 
Sbjct: 398 SYRELPIRIAEIGMMHRYEKSGALSGLQRVREMSLNDGHLFVTPEQIQDEFQKALQLIID 457

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    L     R                       + +   +  +          D++ 
Sbjct: 458 VYEDFNLTDYRFRLSLRD-------------PKDTHKYYDDDEMWENAQSMLKAALDEMG 504

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    D+   ++  +L   + +S   ++    F    ++      T+ 
Sbjct: 505 VDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERF----GLTYV 553

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           GADG++H   M   G+ +       I   +         +          I   ++   D
Sbjct: 554 GADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQV----TVIPVSNEAHVD 609

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G  V  D+  E++  +   +     P Q+IVG K ++D  V ++   +
Sbjct: 610 YAWEVAKLLRDKGVRVDVDERNEKMQLKIRQSQTKKIPYQLIVGDKEMADKTVNVRRYGS 669

Query: 424 GIREDMSLEEVINYASHRF-SNNRP 447
                 S++E +          +RP
Sbjct: 670 KQTHTESIDEFVENIMADIDRKSRP 694


>gi|167842004|ref|ZP_02468688.1| prolyl-tRNA synthetase [Burkholderia thailandensis MSMB43]
          Length = 578

 Score =  246 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 132/235 (56%), Positives = 169/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MRASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  +       DF    E
Sbjct: 181 YVRIFSRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPT-SDFAANVE 234



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 103/192 (53%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPVIADVRNVKAGDPSPDGKGVLDICRGIEVGHVFQLGTKYSDAMGATFIDESGKTQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D KGI+WP+++APF++ L  +        R+A + +YA 
Sbjct: 442 VMGCYGIGITRILGAAIEQNFDDKGIVWPEAIAPFEVVLCPMGYDRSDAVREAADTLYAD 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       +  
Sbjct: 502 LVAAGVDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGRRDAEATLLPA 561

Query: 432 EEVINYASHRFS 443
           +      + +  
Sbjct: 562 DSAATAVAEKVR 573


>gi|319408458|emb|CBI82113.1| Threonyl-tRNA synthetase [Bartonella schoenbuchensis R1]
          Length = 659

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 152/445 (34%), Gaps = 39/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      ++ L      + S G+  W P G K   N+ + +R   + 
Sbjct: 233 KAYLHTLEEAEKRDHRRLGREMDLF--HFQEESPGMIFWHPKGWKMFQNLISYMRRRLDD 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y + M +     D           P +      IF
Sbjct: 291 HKYDEVNAPQVLDKSLWEISGHWGWYKENMFQTTPAADDWDDQCIYALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + +    N  
Sbjct: 351 KHGLKSYRDLPIRLAEFGIVHRYEPSGSLHGLMRVRSFTQDDAHIFCTDEQLADECLNIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G + I ++  + P     S E             C    +      E  
Sbjct: 411 -DLILSTYADFGFEEISLKFSTRPEKRVGSDELWDH---------CEDIMLSVLKTIEKK 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               I +  SI+    A Y    +     L D++    +     ++      FG      
Sbjct: 461 SEGRIKT--SILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 509

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   D +      +    +G+M     ++  +  G   +W          +     
Sbjct: 510 --AFYIDKDSEKRQPVMIHRAILGSMERFLGILIENFSGHMPLWLAPQQVVVAPIT---- 563

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  EKI  +L  +G     D   E+I  +     L   P+ ++ G +    + V
Sbjct: 564 --SEANEYAEKITKKLKAIGLSATADLRNEKINYKIREHSLQKVPVILVCGKRESETNSV 621

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +  +S+EEV+   S+ 
Sbjct: 622 SMRRLGSTDQTVLSIEEVMKQLSNE 646


>gi|281411969|ref|YP_003346048.1| threonyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
 gi|281373072|gb|ADA66634.1| threonyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
          Length = 640

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 90/443 (20%), Positives = 167/443 (37%), Gaps = 41/443 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D       L L   +  +++ G+  +LP G   L+ +    RE     G
Sbjct: 229 YLKFLEEAQRRDHRKLGPHLELFM-LNTEYAPGMPFFLPKGVVVLNELMRFSRELHRERG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +D Y + M    +++++     P +      +++S   SY
Sbjct: 288 YQEIFTPLIMNEQLWKISGHWDHYAENM-YFIEKDEERYAVKPMNCPGHILVYKSRTVSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F++     R E      G+MR R F   DA+ F  TP+  +     +      I
Sbjct: 347 RDLPLRFFEFGRVHRYERSGVLHGLMRVRSFTQDDAHIFC-TPDQIEEEILGVLDLINTI 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G                      V   T        +   +    +     +    
Sbjct: 406 YGQFGFTYR------------------VELSTMPEDHMGDEAIWEKATTALKNALERAGL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   + DS+    + +   ++               + T+ G
Sbjct: 448 SYKVNEGEGAFYGPKIDFH---IRDSIGREWQCATIQLDF--------MMPEKFNVTYIG 496

Query: 305 ADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D K+H  V +     G++     ++     G    W   +AP ++++I I    +   D
Sbjct: 497 PDNKEHKAVMIHRAIYGSLERFFGILIEHFAGAFPTW---LAPIQVAVIPI---SEKHND 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EKI  R+S+ G  VF+D+  E +G +   A     P  +I+G K +   K+ ++ R  
Sbjct: 551 GAEKIAKRISQEGFRVFFDNRRETLGYRIRQAQTQKIPYMIILGDKELESGKISVRTRTG 610

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
              +D+ LE  +    +   + +
Sbjct: 611 KEIKDVDLEHFVETLRNEVLSRK 633


>gi|302669952|ref|YP_003829912.1| threonyl-tRNA synthetase ThrS [Butyrivibrio proteoclasticus B316]
 gi|302394425|gb|ADL33330.1| threonyl-tRNA synthetase ThrS [Butyrivibrio proteoclasticus B316]
          Length = 602

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 154/439 (35%), Gaps = 46/439 (10%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD  +   +L L   M      G+  + P G    + +    R+   R G 
Sbjct: 201 LHQLEEAKARDHRVLGKELELFALM--DEGPGLPFYFPKGLVLKNLLIDYWRKIHVREGY 258

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+S P + +  LW +SG +D Y   M  +   +D      P +      +++S   SYR
Sbjct: 259 QEISTPIMLTKALWEKSGHWDHYRDNM-YVTSVDDMDYAIKPMNCPGGMLVYKSKPHSYR 317

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
             P    ++ +  R E      G+MR+R F   DA+ F    +        +      ++
Sbjct: 318 EFPIRCGELGIVHRAEKSGTLHGLMRARCFTQDDAHIFMREDQVLSE-IQGVMRLIDEVY 376

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
            + G         + P     S E                        S     + +   
Sbjct: 377 SKFGFPYEI-ELSTRPENSIGSDE-----------------DWQLATESLKAAVEGMGKP 418

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    D H   + DS+    +     ++    F    ++       + G 
Sbjct: 419 YKINEGDGAFYGPKLDFH---VKDSIGRTWQCGTIQLD----FQLPQRFD----LEYIGE 467

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK+H    +     G++     ++    +     +P  ++P ++ ++ +        D 
Sbjct: 468 DGKEHRPIMLHRVVFGSIDRFMGILI---EHYAGKFPVWLSPVQVKVLPVSDK---YLDY 521

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR--- 421
            ++I A+L + G     DD  E++G +   A +   P  +IVG K   +  V ++ R   
Sbjct: 522 AKEIMAKLYEEGIRAELDDRDEKLGFKIREARMQKVPYMIIVGEKEKDNRLVSVRQRDAE 581

Query: 422 -LTGIREDMSLEEVINYAS 439
                  +M + + I+   
Sbjct: 582 QDKQEIGEMDMADFIDLLK 600


>gi|260892490|ref|YP_003238587.1| prolyl-tRNA synthetase [Ammonifex degensii KC4]
 gi|260864631|gb|ACX51737.1| prolyl-tRNA synthetase [Ammonifex degensii KC4]
          Length = 574

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 117/311 (37%), Positives = 174/311 (55%), Gaps = 4/311 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR + + +P L+E P +AE+ASH+L+LR G I + + GIY+ LPLG++ L  + +I+REE
Sbjct: 1   MRLTTWLVPTLREVPAEAEVASHRLLLRAGFIRRVAAGIYTLLPLGKRVLAKIESIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G  E+ +P LQ A+LW  SGR++ YG E+ RL DR+ +    GPTHEE++T +  +
Sbjct: 61  MNRAGGQEILMPILQPAELWHRSGRWEVYGPELFRLKDRHGRDFCLGPTHEEMITALVAA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQI  K+RDE RPRFG++R REF+MKD YSFD    G + SY KM+ +
Sbjct: 121 EVRSYKQLPLLLYQIGNKYRDERRPRFGLLRGREFIMKDLYSFDRDWAGLEESYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENT-- 237
           Y R+F R+GL    + A++G IGG +SHEF+ LAD GE   V+C      +    E    
Sbjct: 181 YTRVFTRVGLNFRAVEADTGAIGGSVSHEFMALADAGEAVVVYCPDAACGYAANVEKAES 240

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               + I     +E    P   +++     L   + +  +      E G +         
Sbjct: 241 LPSLEEIGEEGPMELVATPGVRSAEEVAAFLGLPVKQIIKTLIYRTEKGLVAALVRGDRE 300

Query: 297 PMSATFKGADG 307
                 +   G
Sbjct: 301 VNEVKLQNHLG 311



 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 70/197 (35%), Positives = 108/197 (54%), Gaps = 3/197 (1%)

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +     P    +D+      D  P   +  +S RGIEVG IF  G KYS  ++A +    
Sbjct: 370 LPGRDFPVQNVADIRQVSEGDPCPRCGQPLLSVRGIEVGQIFQLGDKYSRALNAYYLDEK 429

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G+   + MG YGIG  R +AAV+E  HD +GIIWP +VAPF++ ++ +   +   R+  E
Sbjct: 430 GEKRPIIMGCYGIGITRTMAAVVEQHHDEEGIIWPLAVAPFQVLVLPVNYEEVPQREVAE 489

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +IY  L + G +V  DD  E+ G +F  ADL+G+PL++ VG +  ++ KVE+K R TG  
Sbjct: 490 EIYNLLREKGIEVLLDDREERPGVKFKDADLVGYPLRITVG-RHAAEGKVELKLRRTGET 548

Query: 427 EDMSLEEVINYASHRFS 443
             +  +EV+   +    
Sbjct: 549 WLVDKDEVLEKVAAFLE 565


>gi|134095943|ref|YP_001101018.1| prolyl-tRNA synthetase [Herminiimonas arsenicoxydans]
 gi|166980129|sp|A4G8R0|SYP_HERAR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|133739846|emb|CAL62897.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS) (Global RNA
           synthesis factor) [Herminiimonas arsenicoxydans]
          Length = 577

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MRASRFFISTLKEAPSDAEIVSHKLMMRAGMIKRLGSGIYTYMPIGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR  AIE+ +P +Q A+LW E+GR+D  G E++R+ DR+ +     PT EEV+TD+ RS
Sbjct: 61  MNRAHAIELLMPLVQPAELWQETGRWDKMGPELMRVKDRHGREYAIQPTSEEVVTDVVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY  MF +
Sbjct: 121 EIKSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDAEGLKRSYQIMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y++IF+R GL+   + A++G IGG  SHEF V+ADTGE  +       D+    E
Sbjct: 181 YVKIFNRFGLQFRAVAADNGAIGGSGSHEFHVIADTGEDAIVYCPT-SDYAANME 234



 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 69/192 (35%), Positives = 107/192 (55%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A   D+ N    D  P+ K V    RGIEVGH+F  GT YS  M AT+   +GK   +
Sbjct: 385 PEAMVLDLRNVVEGDPSPDGKGVLAIQRGIEVGHVFQLGTAYSEKMKATYLDENGKPQLI 444

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  R+V A IE + D +GIIWP ++APF++ L  +     +  +   +K+Y  
Sbjct: 445 QMGCYGIGVTRIVGAAIEQNFDDRGIIWPAALAPFEVVLCPMGYDRSESVKTETDKLYEA 504

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G+ FA  +L+G P ++++G + + +  +E K R       ++L
Sbjct: 505 LLAAGVDVILDDRGERPGAMFADWELIGAPHRIVIGERGLKEGALEYKGRRDADATAVAL 564

Query: 432 EEVINYASHRFS 443
           ++++ +   R +
Sbjct: 565 DDMLAFVQARLA 576


>gi|254419068|ref|ZP_05032792.1| threonyl-tRNA synthetase [Brevundimonas sp. BAL3]
 gi|196185245|gb|EDX80221.1| threonyl-tRNA synthetase [Brevundimonas sp. BAL3]
          Length = 642

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 140/438 (31%), Gaps = 39/438 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD       + L    + +  +G+  W P G      + A +R   +  G
Sbjct: 232 YLQRLEEAEKRDHRKVGKAMELF--HMQEEGRGMVFWHPKGWILWRVLEAYMRRRLDAAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +     W +SG +D Y   M        + +   P +      IF    +SY
Sbjct: 290 YVEVKTPQVLDRKFWEQSGHWDKYRPNMFVCETVEGETLSLKPMNCPGHVQIFDQGQRSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R E      G+MR R F   DA+ F    +  + +  +       +
Sbjct: 350 RELPLRMAEFGACHRYEPSGSLHGLMRVRGFTQDDAHIFCREDQIVEET-AEFIKLARSV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              LG+++  +   + P     S EF                  D              +
Sbjct: 409 HADLGMETAYISLGTRPENRAGSDEF-----------------WDKAEALMAEAARAAGT 451

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A YA   D     + D++          ++              + AT+  
Sbjct: 452 EPVVTEGDGAFYAPKLDFI---VKDAIGREWTCGTIQLDYVLP--------ERLDATYIA 500

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +    +G+      ++  ++ G   +W         ++           D
Sbjct: 501 EDGQKHRPVMLHRAILGSFERFIGIMIENYAGAFPLWLAPTQAVVATIT------SDADD 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               + AR    G     D   E++G +     +   P+  +VG +      V I+   +
Sbjct: 555 YARDVMARFKAAGLRTEIDLRNEKVGYKVREHSVGKVPVIAVVGRQEAEQGLVAIRRLGS 614

Query: 424 GIREDMSLEEVINYASHR 441
             +  +++EE I   +  
Sbjct: 615 QAQTVVTVEEAIRILTDE 632


>gi|242373974|ref|ZP_04819548.1| threonyl-tRNA synthetase 1 [Staphylococcus epidermidis M23864:W1]
 gi|242348328|gb|EES39930.1| threonyl-tRNA synthetase 1 [Staphylococcus epidermidis M23864:W1]
          Length = 654

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 156/445 (35%), Gaps = 33/445 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L T        G+  WLP G      +   I +++  
Sbjct: 238 KAHLQMLEERRERDHRKIGKDLELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 296

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++   M+  P +      I+ +  
Sbjct: 297 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMKLDETEEMVLRPMNCPHHMMIYNNKP 356

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++     
Sbjct: 357 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIQ 416

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDD 241
            ++   G +    R                  D  + + +   D M     S      D+
Sbjct: 417 EVYEDFGFEDYTFRLS--------------YRDPEDKEKYMDDDEMWNKAESMLKEAVDE 462

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  ++ + + +S   ++    F    ++      T
Sbjct: 463 MGLPYVEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERF----ELT 511

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G+DG+ H   +   G+ +         +           +    +I  +N+  H    
Sbjct: 512 YIGSDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVEIIPVNVDIH---- 567

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++  
Sbjct: 568 YDYARQLQDELKSQGVRVEIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNEVNVRKY 627

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +  +E +  +E I          +
Sbjct: 628 GSEDQESLEKDEFIWNLVDEIRLKK 652


>gi|302342678|ref|YP_003807207.1| prolyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
 gi|301639291|gb|ADK84613.1| prolyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
          Length = 571

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 125/227 (55%), Positives = 163/227 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+Y +P L+ENP DAE+ SH+LMLR G+I + + GIY+WLP+G + L  V AI+R+E
Sbjct: 1   MNFSRYLIPTLKENPSDAEVVSHQLMLRAGLIRKLAGGIYTWLPMGLRVLRKVEAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+ +P +Q A+LW ESGR+D YG+E+LR  DR+D      PTHEEV+TD+ R 
Sbjct: 61  MNAAGAQELLMPGVQPAELWRESGRWDFYGRELLRFVDRHDNEYCLAPTHEEVITDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR++P   YQIQ KFRDE+RPRFGVMR+REFLMKDAYSFD + + +  SY  M  +
Sbjct: 121 EIQSYRDMPLNLYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFDASEDAAAQSYQIMRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y+RIF RLGL+   + A+SG IGG  SHEF+VLADTGE  +      
Sbjct: 181 YMRIFDRLGLRYGVVEADSGSIGGSFSHEFMVLADTGEDAIVSCPAC 227



 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 67/194 (34%), Positives = 103/194 (53%), Gaps = 3/194 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A  A  +D+ N    D  P        ARGIEVGHIF  GTKYS  + AT+   DG+
Sbjct: 371 GRDAAGATIADLRNLAAGDPCPSCGAPPTLARGIEVGHIFRLGTKYSKALGATYLDVDGQ 430

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              + MG YGIG  R+VAA IE  +D  GI++P ++AP  ++++ ++A      +A +++
Sbjct: 431 AKTIVMGCYGIGVSRIVAAAIEQGNDEAGIVFPLAIAPVSVAVLPMRAEGP-AMEAAQRL 489

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +  L  +G D   DD   + G +F  +DLLG PL+V+VG K +   +VE+K R     E 
Sbjct: 490 HDELWALGVDCLLDDRDIRPGVKFKDSDLLGVPLRVVVGPKGLETGEVELKKRTAPQPEM 549

Query: 429 MSLEEVINYASHRF 442
           + + +     +   
Sbjct: 550 IPMAQAATIIAKLV 563


>gi|82523876|emb|CAI78599.1| threonyl-tRNA synthetase [uncultured delta proteobacterium]
          Length = 631

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 160/440 (36%), Gaps = 40/440 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD      +L L + +  +   G+  W P G      +     +E  
Sbjct: 224 LKEHLNHLEEVKKRDHRKLGKELDLFS-LSEEVGAGMILWHPKGAMFRYLLEDFEIKEHL 282

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  ++  P L  ++LW +SG +D Y + M   ++ ++++    P +      I++SHI
Sbjct: 283 KRGYQKVIGPQLLRSELWKKSGHFDHYRENM-YFSEIDNQSYGIKPMNCLAHMLIYKSHI 341

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  ++++    R E      G++R REF   DA+      +        +    
Sbjct: 342 HSYRDLPIRYFELGTVHRHEKSGVLHGLLRVREFTQDDAHILCTPEQLDNE-IKSILDFI 400

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +    G K   +   + P     S E                   +    +  +  ++
Sbjct: 401 KYVMGIFGFKYE-VEISTRPEHSIGSDE-----------------DWERATNALKSALEE 442

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             +   + E   A Y    D    KL D+L    + +    +    F    ++      +
Sbjct: 443 SGTGYDLNEGDGAFYGPKIDF---KLKDALDRKWQCATIQCD----FTLPERF----ELS 491

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG  +    +    +GA+     ++   + G   +W             I      
Sbjct: 492 YVGQDGVKYRPVMLHRVILGAIERFVGILIEHYAGAFPVW------LSPVQAVILTVTDR 545

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  + +Y  L      V  D   E++G +   A L   P  +I+G K VS+ +V ++ 
Sbjct: 546 VDEYAQNLYQELIDADIRVEMDIRNEKLGLKVREAQLQKIPYMLIIGDKEVSEKRVTLRC 605

Query: 421 RLTGIREDMSLEEVINYASH 440
           R    + ++++E+ I     
Sbjct: 606 RDDKKQSELNIEDFIGLVKK 625


>gi|109897601|ref|YP_660856.1| prolyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
 gi|123171506|sp|Q15WD6|SYP_PSEA6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|109699882|gb|ABG39802.1| prolyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
          Length = 571

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 116/237 (48%), Positives = 164/237 (69%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR G++ + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGLVRKLASGLYTWLPTGLRVLNKVAQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G++E+ +P +Q ADLW ESGR+D YG E+LR+ DR+ +  + GPTHEEV+T + ++
Sbjct: 61  MDRAGSLEILMPVVQPADLWQESGRWDEYGPELLRIKDRHYRDFVLGPTHEEVVTALVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQ+Q KFRDE+RPRFGVMR REF MKDAYSF L+ E    +Y+ MF +
Sbjct: 121 EVSSYKQLPLNVYQVQTKFRDEVRPRFGVMRGREFTMKDAYSFHLSDECLNKTYDDMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y R+F R+ L+  P+ A++G IGG+ SHEF VLAD+GE  +    +  D+    E  
Sbjct: 181 YCRVFERINLEFRPVIADNGSIGGNASHEFHVLADSGEDDIAF-SNASDYAANIEKA 236



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/194 (34%), Positives = 109/194 (56%), Gaps = 3/194 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A     +D+ N +  D  P+ +      RGIEVGHIF  G+KYS  ++      +GK
Sbjct: 378 ERDAKEFQEADIRNVQAGDPSPDGQGTLEIKRGIEVGHIFQLGSKYSEALNCGVLDENGK 437

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              + MG YGIG  R+VAA IE +HD  GIIWPD++APFK++++ +        +   E 
Sbjct: 438 HQVLNMGCYGIGVSRIVAAAIEQNHDKYGIIWPDAIAPFKVAIVPMNMHKSHRIQQVAED 497

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA+L   G +V +DD  E+ G  F   +L+G P  +++G + + + KVE K+R +G ++
Sbjct: 498 LYAQLKAAGVEVLFDDRKERPGVMFNDMELVGVPHTIVIGERNLDEQKVEYKNRRSGEKQ 557

Query: 428 DMSLEEVINYASHR 441
            + + ++  + S  
Sbjct: 558 LIDIPQLAEFVSTL 571


>gi|170287992|ref|YP_001738230.1| threonyl-tRNA synthetase [Thermotoga sp. RQ2]
 gi|238688803|sp|B1L7W6|SYT_THESQ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|170175495|gb|ACB08547.1| threonyl-tRNA synthetase [Thermotoga sp. RQ2]
          Length = 640

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 90/443 (20%), Positives = 166/443 (37%), Gaps = 41/443 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D       L L   +  +++ G+  +LP G   L+ +    RE     G
Sbjct: 229 YLKFLEEAQRRDHRKLGPHLELFM-LNTEYAPGMPFFLPKGVVVLNELMKFSRELHRERG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +D Y + M    +++++     P +      +++S   SY
Sbjct: 288 YQEIFTPLIMNEQLWKISGHWDHYAENM-YFIEKDEERYAVKPMNCPGHILVYKSRTVSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F++     R E      G+MR R F   DA+ F  TP   +     +      I
Sbjct: 347 RDLPLRFFEFGRVHRYERSGVLHGLMRVRSFTQDDAHIFC-TPGQIEEEILGVLDLINTI 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G                      V   T        +   +    +     +    
Sbjct: 406 YSQFGFTYR------------------VELSTMPEDHMGDEAIWEKATTALKNALERAGL 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D H   + DS+    + +   ++               + T+ G
Sbjct: 448 SYKVNEGEGAFYGPKIDFH---IRDSIGREWQCATIQLDF--------MMPEKFNVTYIG 496

Query: 305 ADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D K+H  V +     G++     ++     G    W   +AP ++++I I    +   D
Sbjct: 497 PDNKEHRAVMIHRAIYGSLERFFGILIEHFAGAFPTW---LAPIQVAVIPI---SEKHND 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EKI  R+S+ G  VF+D+  E +G +   A     P  +I+G K +   K+ ++ R  
Sbjct: 551 GAEKIAKRISQEGFRVFFDNRRETLGYRIRQAQTQKIPYMIILGDKELESGKISVRTRTG 610

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
              +D+ LE  +    +   + +
Sbjct: 611 KEIKDVDLEHFVETLRNEVLSRK 633


>gi|238754780|ref|ZP_04616131.1| Prolyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
 gi|238706940|gb|EEP99306.1| Prolyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
          Length = 572

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 127/235 (54%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GM+ + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMVRKLASGLYTWLPTGIRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GL   P+ A++G IGGD SHEF VLAD+GE  +       D+    E
Sbjct: 181 YNRIFSRMGLDFRPVLADTGSIGGDASHEFQVLADSGEDDIVF-STGSDYAANIE 234



 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/192 (39%), Positives = 114/192 (59%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 380 PLPPVADLRNVVEGDISPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     ++  E++YA 
Sbjct: 440 AMGCYGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVKELAEELYAT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V  DD  E+ G  FA  +L+G P  +++G + +   +VE K+R TG ++ +  
Sbjct: 500 LRTKGIEVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVEYKNRRTGEKQMIKT 559

Query: 432 EEVINYASHRFS 443
            E+I +   +  
Sbjct: 560 SEIIEFLLSQIK 571


>gi|300715419|ref|YP_003740222.1| Prolyl-tRNA synthetase [Erwinia billingiae Eb661]
 gi|299061255|emb|CAX58364.1| Prolyl-tRNA synthetase [Erwinia billingiae Eb661]
          Length = 572

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 121/235 (51%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNVFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHASQESLQATYDDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y + F R+GL    ++A++G IGG  SHEF VLA +GE  V       D+    E
Sbjct: 181 YSQSFKRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIF-STESDYAANIE 234



 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 111/192 (57%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D+ P+ K      RGIEVGHIF  GTKYS  M A+ +G DG++  +
Sbjct: 380 PLPRVEDIRNVVEGDASPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKASVQGEDGRNQIL 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIWP ++APF+++++ +  H     ++  E++YA+
Sbjct: 440 TMGCYGIGITRIVAASIEQNHDERGIIWPAALAPFQVAILPMNMHKSFRVKELAEELYAQ 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE K R  G +  +  
Sbjct: 500 LRAKGIDVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEVEYKSRREGEKRMIKT 559

Query: 432 EEVINYASHRFS 443
            E++++     +
Sbjct: 560 GEILDFLVSEIN 571


>gi|46580942|ref|YP_011750.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601757|ref|YP_966157.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
 gi|81566250|sp|Q728R5|SYT_DESVH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166987320|sp|A1VBB4|SYT_DESVV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|46450362|gb|AAS97010.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561986|gb|ABM27730.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Desulfovibrio
           vulgaris DP4]
 gi|311234632|gb|ADP87486.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris RCH1]
          Length = 644

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 87/436 (19%), Positives = 156/436 (35%), Gaps = 41/436 (9%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  ++E  R D      +L L        + G+  W P G      +   +R+E  +   
Sbjct: 231 LHRIEEAKRRDHRKLGQQLDLFAFH-EDVAPGMVFWHPKGMLVRTIIEDFLRKEHLKRRY 289

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L   +LW +SG YD+Y + M    + ++ A    P +      I+RS I+SYR
Sbjct: 290 DIVQGPQLLRRELWEKSGHYDNYRENM-YFTEIDENAYGVKPMNCLAHMLIYRSAIRSYR 348

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP  F+++ +  R E      G++R R+F   DA+      +      + +        
Sbjct: 349 DLPKRFFELGVVHRHEKSGVLHGLLRVRQFTQDDAHIICRPDQLEDEIIDVI-------- 400

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                      A    +      ++ V   T   +   S +  +    +     +     
Sbjct: 401 -----------ALVRDLMNLFGFDYKVAVSTRPEKSIGSDEAWELATNALVKAVERAGIP 449

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
            +I E   A Y    DV    L D +    + S    +    F    ++       + G 
Sbjct: 450 YTINEGDGAFYGPKIDVR---LMDCIGREWQCSTIQCD----FTLPERFD----LVYVGQ 498

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H    +    +G++     V+   + G    W   V    +++           + 
Sbjct: 499 DGERHRPVMVHRAILGSLERFIGVLIEQYAGAFPAWLAPVQARLLTVT------DAQNEF 552

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E   A L+K G  V  D   E++G +   A L   P  ++VG K V    V ++ R   
Sbjct: 553 VESARAALAKAGIRVEADVRNEKLGYKVREAQLEKIPYILVVGDKEVEAGGVNVRLRTGE 612

Query: 425 IREDMSLEEVINYASH 440
                SL+EV++    
Sbjct: 613 NLGLKSLDEVVSLLES 628


>gi|183597570|ref|ZP_02959063.1| hypothetical protein PROSTU_00851 [Providencia stuartii ATCC 25827]
 gi|188023065|gb|EDU61105.1| hypothetical protein PROSTU_00851 [Providencia stuartii ATCC 25827]
          Length = 575

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 121/235 (51%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y WLP G + L  V  I+REE
Sbjct: 1   MRTSKYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYDWLPTGVRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G+IE+S+P +Q ADLW ESGR++ YG E+LR ADR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MENAGSIEVSLPVVQPADLWQESGRWEQYGPELLRFADRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   +QIQ KFRDE+RPRFG+MRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EITSYKQLPLNLFQIQTKFRDEVRPRFGIMRSREFIMKDAYSFHTSQESLQETYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+G     ++A++G IGG  SHEF VLA +GE  +       DF    E
Sbjct: 181 YSKIFTRIGFDFRAVQADTGSIGGSASHEFQVLAQSGEDDIVF-STGSDFAANIE 234



 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 3/190 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A+ +  +G +  V MG
Sbjct: 383 ETFDLRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKASVQNEEGHNQIVTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK 374
            YGIG  R+VAA IE SHD +GIIWPD++APF ++++ +  H     ++  EK+YA L  
Sbjct: 443 CYGIGVTRIVAAAIEQSHDERGIIWPDAIAPFHVAILPMNMHKSYRVKEVAEKLYADLKA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV +DD  E+ G  FA  +L+G P  +++G + + +++VE K R    +  + L+ V
Sbjct: 503 QGIDVIFDDRKERPGVMFADMELIGVPYTIVIGDRNLDNNQVEYKARRNDEKALIGLDNV 562

Query: 435 INYASHRFSN 444
           +++   + +N
Sbjct: 563 VSFLKEKLAN 572


>gi|78222566|ref|YP_384313.1| prolyl-tRNA synthetase [Geobacter metallireducens GS-15]
 gi|114152198|sp|Q39VY6|SYP_GEOMG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78193821|gb|ABB31588.1| Prolyl-tRNA synthetase [Geobacter metallireducens GS-15]
          Length = 570

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 127/237 (53%), Positives = 169/237 (71%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P ++E P DAE+ SHKLMLR GMI + + GIY++LPLG +++  V  I+REE
Sbjct: 1   MRYSQYFIPTVKETPSDAEVVSHKLMLRAGMIRKLAAGIYNYLPLGLRSIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P++Q A+LW ES R++ YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIELLMPSVQPAELWQESKRWEQYGKELLRFKDRKDAEFCLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSFD++ E +  SY+KM+ +
Sbjct: 121 EVKSYRQLPLNLYQVQSKFRDEIRPRFGLMRGREFIMKDAYSFDVSSEAADTSYDKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GLK   + A++G IGG  SHEF+VLAD+GE  +       ++    E  
Sbjct: 181 YRRIFQRCGLKFRAVEADTGSIGGSSSHEFMVLADSGEDAIVSCTAC-EYAANVEKA 236



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 78/189 (41%), Positives = 108/189 (57%), Gaps = 3/189 (1%)

Query: 257 AATSDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           A  +D+ N    D  P  +       RGIEVGH+F  GTKYS  + ATF  ADGK+  + 
Sbjct: 376 ALIADIRNVVHGDPCPRCEAGHLEMWRGIEVGHVFKLGTKYSESLRATFLDADGKEQVIF 435

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA IE +HD  GII+P  +APF   +  +   D     AC+++Y  L+
Sbjct: 436 MGCYGIGISRTVAACIEQNHDADGIIFPIPIAPFHCIISAVSTKDAEVVAACDELYRALT 495

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            VG +V +DD  E+ GS+F  ADL+G PL+++VGSK +++ KVE+K R  G    + L E
Sbjct: 496 AVGVEVLFDDRDERPGSKFKDADLIGIPLRIVVGSKNLAEGKVELKSRKGGEVSLLPLAE 555

Query: 434 VINYASHRF 442
            +       
Sbjct: 556 AVETVKGLV 564


>gi|212710377|ref|ZP_03318505.1| hypothetical protein PROVALCAL_01437 [Providencia alcalifaciens DSM
           30120]
 gi|212686959|gb|EEB46487.1| hypothetical protein PROVALCAL_01437 [Providencia alcalifaciens DSM
           30120]
          Length = 572

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 160/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y WLP G + L  V  I+REE
Sbjct: 1   MRTSKYLLSTLKETPADAEVISHKLMLRAGMIRKLASGLYDWLPTGVRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MENAGAIEVSLPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EITSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+G     + A++G IGG+ SHEF VLA +GE  V       DF    E
Sbjct: 181 YSKIFTRIGFDFRAVHADTGSIGGNASHEFQVLAQSGEDDVVF-STESDFAANIE 234



 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/187 (38%), Positives = 112/187 (59%), Gaps = 3/187 (1%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A+ +  +G +  V MG YG
Sbjct: 386 DLRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAMKASVQNEEGHNQIVTMGCYG 445

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGC 377
           IG  R+VAA IE SHD +GIIWPD++APF ++++ +  H     ++  EK+YA L   G 
Sbjct: 446 IGVTRIVAAAIEQSHDDRGIIWPDAIAPFHVAILPMNMHKSYRVKEVAEKLYADLKAQGI 505

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV +DD  E+ G  FA  +L+G P  +++G + +  ++VE K R +  ++ + L+ V+++
Sbjct: 506 DVIFDDRKERPGVMFADMELIGVPYTIVIGDRNLDTNQVEYKSRRSDDKQLVGLDNVVSF 565

Query: 438 ASHRFSN 444
              + + 
Sbjct: 566 LKEKLAK 572


>gi|332523222|ref|ZP_08399474.1| threonine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
 gi|332314486|gb|EGJ27471.1| threonine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
          Length = 648

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 160/450 (35%), Gaps = 36/450 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L  L+E   RD      +L L   M++ +  +G+  WLP G      +   I +++ 
Sbjct: 229 KAYLTRLEEAKERDHRKLGKELDLF--MVNPEVGQGLPFWLPNGATIRRTLERYITDKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P + S D +  SG +D Y  +M    D  D +  +  P +     ++++ H
Sbjct: 287 ASGYQHVYTPPMASVDFYKTSGHWDHYRDDMFPTMDMGDGEEFVLRPMNCPHHIEVYKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    ++ +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDFD 240
           + ++    L     R                  D  +T+ +  + +  +          D
Sbjct: 407 IDVYEDFNLTDYRFRLS--------------YRDPNDTEKYFDNDEMWEKAQSMLKAALD 452

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++       E   A Y    D+   ++  +L   + +S   ++    F    ++      
Sbjct: 453 EMGVDYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERFD----L 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            + GADG++H   M   G+ +       I             +          I   ++ 
Sbjct: 502 KYIGADGEEHRPVMIHRGVISTMERFTAILIETYKGAFPTWLAPHQV----TVIPISNEA 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L   G     D+  E++  +   +     P Q+IVG K + +  V ++ 
Sbjct: 558 HVDYAWEVAKILRDKGVRADVDERNEKMQYKIRASQTSKIPYQLIVGDKEMEEKSVNVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRF-SNNRPVL 449
             +      ++E+ +          ++PV+
Sbjct: 618 YGSKATHTETIEQFVETILADIARKSKPVV 647


>gi|88860213|ref|ZP_01134852.1| prolyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
 gi|88818207|gb|EAR28023.1| prolyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
          Length = 573

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V AI+R+E
Sbjct: 1   MRTSQYILATLKEVPSDAEIISHQLMLRAGMIRRLASGLYTWLPSGLRVLRKVEAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GAIEM +P +Q ADLW+ESGR++ +G E+LR+ DR+++    GPTHEEV+T+  R 
Sbjct: 61  MEKAGAIEMLMPVIQPADLWIESGRWEQFGPELLRIKDRHNREFALGPTHEEVITEFVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ K RDE+RPRFGVMR+REF MKDAYSF L+ E   ++Y  M  +
Sbjct: 121 EVSSYKQLPLNLFQIQTKVRDEVRPRFGVMRAREFTMKDAYSFHLSDECLANTYAIMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  +F R+GL+  P+ A++G IGG +SHEF VLA++GE  +       D+    E  
Sbjct: 181 YCNVFERIGLEYRPVIADTGSIGGSVSHEFHVLAESGEDAIAF-SSGSDYAANIEKA 236



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 97/187 (51%), Gaps = 4/187 (2%)

Query: 260 SDVHNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D            RGIEVGHIF  GTKYS  M A      GK+  + MG Y
Sbjct: 387 ADLRNVVEGDVSPCGNGTLSIKRGIEVGHIFQLGTKYSDAMKAGVLNETGKNQIMTMGCY 446

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVG 376
           GIG  R+VAA IE + D KGI+WP ++APF+I+++ +            E+IY  L   G
Sbjct: 447 GIGVSRIVAAAIEQNFDAKGIVWPKAIAPFQIAIVPMNMHKSHRIPAVAERIYQELKAAG 506

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V +DD  E+ G  F   +L+G P  +++G + + D+ VE K R +G     +L+ V+ 
Sbjct: 507 IEVLFDDRKERPGVMFNDMELIGIPHTLVIGERNLDDNCVEYKSR-SGENAMYNLDTVVA 565

Query: 437 YASHRFS 443
               +  
Sbjct: 566 ELIAKIR 572


>gi|300309711|ref|YP_003773803.1| prolyl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
 gi|300072496|gb|ADJ61895.1| prolyl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
          Length = 575

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 160/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MRASRFFISTLKEAPSDAEIVSHKLMMRAGMIKRLGAGIYTYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR++  G E++R+ DR+ +     PT EEV+TD+ RS
Sbjct: 61  MNRAGAVELLMPVVQPAELWQETGRWNKMGAELMRVKDRHGRDFAIQPTSEEVVTDVARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD   +G K SY  M+ +
Sbjct: 121 ELRSYKQLPVNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDVDGLKKSYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y+RIF R GL+   + A++G IGG  SHEF V+A TGE  +       D+    E
Sbjct: 181 YVRIFTRFGLEFRAVAADNGAIGGSGSHEFHVVAATGEDALVYCPT-SDYAANME 234



 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 107/192 (55%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K V    RGIEVGH+F  GT YS  M AT+    GK   +
Sbjct: 383 PEPLVADIRNVVEGDASPDGKGVLAIQRGIEVGHVFQLGTTYSEAMKATYLDEAGKPQPL 442

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D +GIIWP S+APF++ L  +     +  +   +K+YA+
Sbjct: 443 VMGCYGIGVTRILGAAIEQNFDDRGIIWPTSIAPFEVVLCPMGYDRSEAVKTEIDKLYAQ 502

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LS+ G DV  DD GE+ G+ FA  +L+G P +++VG + + D  +E + R       + L
Sbjct: 503 LSEAGVDVVLDDRGERPGAMFADWELIGVPHRIVVGDRGLKDGNIEYQGRRDTEATQVPL 562

Query: 432 EEVINYASHRFS 443
            E + +   + +
Sbjct: 563 AEALAFIQGKLA 574


>gi|126175060|ref|YP_001051209.1| prolyl-tRNA synthetase [Shewanella baltica OS155]
 gi|166980155|sp|A3D6H7|SYP_SHEB5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|125998265|gb|ABN62340.1| prolyl-tRNA synthetase [Shewanella baltica OS155]
          Length = 571

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 120/237 (50%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWEKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +       D+    E  
Sbjct: 181 YSNILTRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAY-STGSDYAANIEKA 236



 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPTAQVADIRNVVEGEPTPDGSGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GIIWP+++APF + ++ +    
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIIWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  L++ G DV  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLNEAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG ++D+  +++++   +   
Sbjct: 545 YKNRRTGEKQDIPFDQLLDLLKNAVK 570


>gi|325569916|ref|ZP_08145910.1| threonine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325157039|gb|EGC69207.1| threonine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 646

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 162/441 (36%), Gaps = 30/441 (6%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++   G
Sbjct: 231 FIRLREEAKERDHRKLGKELELFM-LSPEVGAGLPFWLPKGATIRRTIERYIVDKEVSLG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKS 124
              +  P + + DL+  SG +D Y ++M    D  D  M +  P +      ++++ I S
Sbjct: 290 YQHVYTPIMANVDLYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIHS 349

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    ++ +  R E       ++    +  +     + P+  K  + +     + +
Sbjct: 350 YRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKEEFKRTLDLMVGV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +    +     R                     + + F      +          D++  
Sbjct: 410 YEDFNITDYRFRLS-------------YRDPQNKDKYFDDDAMWENAQTMLKAAMDELEL 456

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                +   A Y    DV   ++  +L   + +S   ++    F    ++      T+ G
Sbjct: 457 DYFEADGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTYVG 505

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG++++  +  +  G +  +   +    +     +P  +AP + S+I +    +   D 
Sbjct: 506 EDGENNHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQASIIPVSV--EAHSDY 562

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +I  RL   G  V  DD  E++G +   +     P Q++VG + V+D+ V I+   + 
Sbjct: 563 AYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKIPYQIVVGDQEVNDATVNIRRYGSK 622

Query: 425 IREDMSLEEVINYASHRFSNN 445
             +   L   ++  +    N 
Sbjct: 623 ETQVEELNLFVDAMAAEVKNY 643


>gi|306833981|ref|ZP_07467104.1| threonine--tRNA ligase [Streptococcus bovis ATCC 700338]
 gi|304423847|gb|EFM26990.1| threonine--tRNA ligase [Streptococcus bovis ATCC 700338]
          Length = 666

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 157/445 (35%), Gaps = 33/445 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y     +   RD      +L L   MI  +  +G+  WLP G      +   I +++  +
Sbjct: 249 YLKQRQEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYIVDKEVAS 306

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIK 123
           G + +  P L S DL+  SG +D Y ++M    D  D +  +  P +      +++ H+ 
Sbjct: 307 GYLHVYTPPLASVDLYKTSGHWDHYREDMFPTMDMGDGEEFVLRPMNCPHHIQVYKHHVH 366

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    +I +  R E       ++    +  +     +TPE  +  + K     + 
Sbjct: 367 SYRELPIRIAEIGMMHRYEKSGALSGLQRVREMSLNDGHLFVTPEQIQEEFQKALQLIID 426

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    L     R                       + +   +  +          D++ 
Sbjct: 427 VYEDFDLTEYRFRLSLRD-------------PKDTHKYYDDDEMWENAQSMLKAALDEMG 473

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    D+   ++  +L   + +S   ++    F    ++      T+ 
Sbjct: 474 VEYFEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLD----FLLPERF----GLTYI 522

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           GADG++H   M   G+ +       I   +         +          I   ++   D
Sbjct: 523 GADGEEHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQV----TVIPVSNEAHVD 578

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G  V  D+  E++  +   +     P Q+IVG K ++D  V ++   +
Sbjct: 579 YAWEVAKVLRDKGVRVDVDERNEKMQLKIRQSQTKKIPYQLIVGDKEMADKTVNVRRYGS 638

Query: 424 GIREDMSLEEVINYASHRFS-NNRP 447
                 +++E ++      +  +RP
Sbjct: 639 KQTHTEAIDEFVDNILADINRKSRP 663


>gi|290475547|ref|YP_003468435.1| threonine tRNA synthetase [Xenorhabdus bovienii SS-2004]
 gi|289174868|emb|CBJ81669.1| threonine tRNA synthetase [Xenorhabdus bovienii SS-2004]
          Length = 642

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 67/447 (14%), Positives = 144/447 (32%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++   +L  L+E   RD      +L L    + + + G+  W   G      +    R +
Sbjct: 227 KQLNAYLQRLEEASKRDHRKIGKQLDLY--HMQEEAPGMAFWHNDGWTIFRELETFARVK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW ++G +++Y + M       ++     P +      IF  
Sbjct: 285 LKEYHYQEVKGPFMMDRILWEKTGHWENYKEHMFT-TSSENREYCVKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +  +   +    
Sbjct: 344 GLKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEDQIHQE-VSNCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +++  G + + ++  + P                      ++   D          
Sbjct: 403 MIYDVYNTFGFEKVVVKLSTRPEKR-----------------IGTEKQWDEAEADLAEAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                         A Y    +     L+D L    +     ++    F    +    ++
Sbjct: 446 KQSGIEFEYQPGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPAR----LN 494

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A++ G + +    V +    +G++     ++   + G    W        +++       
Sbjct: 495 ASYVGENNERKVPVMIHRAVLGSLERFIGILTEEYAGFFPTWLAPQQVVVMNIT------ 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  +++  +L   G     D   E+IG +     L   P  ++ G K V   K  +
Sbjct: 549 DGQAGYVQELVKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKTSV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       +++ E I        + 
Sbjct: 609 RTRRGKDLGSINVSEFIEKLLTEIRSR 635


>gi|238026159|ref|YP_002910390.1| prolyl-tRNA synthetase [Burkholderia glumae BGR1]
 gi|237875353|gb|ACR27686.1| Prolyl-tRNA synthetase [Burkholderia glumae BGR1]
          Length = 578

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 130/235 (55%), Positives = 169/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRIAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDQAGLKESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y+R+F R+GL+   + A++G IGG  SHEF V+ADTGE  +       DF    E
Sbjct: 181 YVRVFTRIGLEFRAVAADNGSIGGSGSHEFHVIADTGEDAIAYCPT-SDFAANVE 234



 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 69/192 (35%), Positives = 105/192 (54%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  + ATF    GK   +
Sbjct: 382 PEPVVADLRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSKALGATFLDEGGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R++ A IE + D +GIIWP+++APF++ L  +     ++ R+  +++YA 
Sbjct: 442 EMGCYGIGVTRILGAAIEQNFDDRGIIWPEAIAPFEVVLCPMGYDRSELVRETADQLYAA 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LS  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       +  
Sbjct: 502 LSAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGRRDTEATLLPA 561

Query: 432 EEVINYASHRFS 443
           +           
Sbjct: 562 DGAAATVIETVR 573


>gi|325295461|ref|YP_004281975.1| threonyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065909|gb|ADY73916.1| threonyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 658

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/464 (17%), Positives = 159/464 (34%), Gaps = 60/464 (12%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD  +   +L L +    +   G+  W P G      +   + +E  + 
Sbjct: 231 EYLHRLEEAKKRDHRVLGKQLDLFSIY-EEAGSGLVFWHPNGAIIRREIEEWVEKEHEKR 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEM-------LRLADRNDKA-------------- 103
           G   +  P +  ADLW  SG YD Y + M           ++                  
Sbjct: 290 GYQRIYTPHIMKADLWKISGHYDFYKENMFFVPVVEHDEEEKLGNEKVPLTCEEVERANW 349

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYS 162
               P +      I++S  +SY++LP  F++     R E      G++R R F   D + 
Sbjct: 350 YAVKPMNCPGHILIYKSQPRSYKDLPLRFFEFGTVHRYEKSGSLHGLLRVRGFTQDDGHI 409

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           F    +                   LG+    M   S         ++++   T   +  
Sbjct: 410 FCRPDQLKDEI--------------LGVLDYVMELLSV-----FKLDYVINIGTKPEKYI 450

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            S +  +    +      +     +IVE   A Y    D+    + D++          +
Sbjct: 451 GSDEAWEHATQALIDALKERGLEYNIVEGDGAFYGPKIDI---AVLDAIGRKWDGPTIQV 507

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +    F    ++      T+   DG+      +    +G++     ++    +    ++P
Sbjct: 508 D----FNLPERFD----LTYVDRDGEKKRPVMVHRAIMGSIERFIGLLI---EHYAGLFP 556

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +AP ++ +I +        +  E ++ +L +VG     DD   ++G +   A+LL  P
Sbjct: 557 LWLAPTQVVVIPVSDK---YINYAENVFRKLKEVGIRAKLDDESGKVGYKIRKAELLKIP 613

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             VIVG K    + V ++ +  G    M +   ++         
Sbjct: 614 YMVIVGEKEQESNTVSVRSKKEGDLGSMEISNFLDKILTEIKEK 657


>gi|299065636|emb|CBJ36808.1| Proline--tRNA ligase [Ralstonia solanacearum CMR15]
          Length = 574

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 119/235 (50%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   G+Y+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGLYTYMPVGLRVIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GA+E+ +P +Q A+LW E+GR+D  G EM+R+ DR+++ ++  PT EEV+TDI R+
Sbjct: 61  MNASGAVEVLMPVVQPAELWQETGRWDKMGDEMMRVKDRHERDLVIQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KM+ +
Sbjct: 121 EIRSYKQMPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAEGLKVSYEKMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL+   + A++G IGG  SHEF V+ADTGE  +       D+    E
Sbjct: 181 YTRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIVY-SPDSDYAANIE 234



 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 68/172 (39%), Positives = 102/172 (59%), Gaps = 3/172 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A   D+ N    D  P+ K      RGIEVGH+F  GT+YS  MSATF   +GK   +
Sbjct: 382 PEAEVYDLRNVVAGDPSPDGKGTLALCRGIEVGHVFMLGTRYSESMSATFLDENGKTQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +     +  R   ++++A 
Sbjct: 442 MMGCYGIGITRILGAAIEQNYDARGIIWPVSIAPFEVVICPVGYDRSEAVRAEADRLHAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           L+  G DV  DD GE+ G+ FA  +L+G P +V+VG + + + K+E++ R  
Sbjct: 502 LAAAGIDVILDDRGERPGAMFADWELIGVPFRVVVGERGLKEGKLELQGRRD 553


>gi|330994118|ref|ZP_08318046.1| Threonyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
 gi|329758585|gb|EGG75101.1| Threonyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
          Length = 644

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/436 (18%), Positives = 146/436 (33%), Gaps = 41/436 (9%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E  R D      ++ L    I + + G   W P G +    +   +R  Q+R G 
Sbjct: 233 LHQLEEAERRDHRRIGREMDLF--HIQEEAVGQIFWHPKGWRLYSVLQDYMRRAQDRNGY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            E+  P L    LW  SG +D Y + M     +  DK +   P +      IFR  ++SY
Sbjct: 291 QEVRTPQLVDRALWEASGHWDKYREHMFIATVEDEDKTLALKPMNCPCHVQIFRHGLRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R E      G+MR R F   DA+ F    + +  +   + +     
Sbjct: 351 RELPLRMAEFGACHRYEPSGALHGIMRVRGFTQDDAHIFCTEDQIADETARFVRMLADVY 410

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                       A+                     Q        D    +     D    
Sbjct: 411 QDLGFEHFRVKFADRPE------------------QRAGDDATWDRAENALKVACDMAGV 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D++  + +     ++              + A++ G
Sbjct: 453 TYEHNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVDYVLP--------ERLDASYVG 501

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D   H    +    +G+      ++   H G+  +W   V     S++          D
Sbjct: 502 EDSARHRPVMLHRAILGSFERFLGILIEQHAGRFPLWLAPVQVVVASIVT------DAAD 555

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  RL   G  V  D   E+I ++     L   P+ ++VG K   ++ V ++    
Sbjct: 556 YAQQVADRLRAAGLVVEADLRNEKINAKIREHSLARVPVILVVGRKEAEENTVAMRRLGG 615

Query: 424 GIREDMSLEEVINYAS 439
             +E + L+E ++  +
Sbjct: 616 KAQEVLPLDEAVSALA 631


>gi|123443459|ref|YP_001007432.1| prolyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332160618|ref|YP_004297195.1| prolyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|152112962|sp|A1JP53|SYP_YERE8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|122090420|emb|CAL13288.1| prolyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318606904|emb|CBY28402.1| prolyl-tRNA synthetase; Bacterial type [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664848|gb|ADZ41492.1| prolyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330860908|emb|CBX71188.1| prolyl-tRNA synthetase [Yersinia enterocolitica W22703]
          Length = 572

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L    + A++G IGG  SHEF VLAD+GE  +       D+    E
Sbjct: 181 YSKIFERMDLNFRAVLADTGSIGGSASHEFQVLADSGEDDIVF-STESDYAANIE 234



 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 75/192 (39%), Positives = 112/192 (58%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 380 PLPQVADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     +   E++YA 
Sbjct: 440 TMGCYGIGVSRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHKSFRVQALAEELYAT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE K+R  G ++ +  
Sbjct: 500 LRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVEYKNRRAGEKQMIKT 559

Query: 432 EEVINYASHRFS 443
            E+I++   +  
Sbjct: 560 SEIIDFLLSQIK 571


>gi|326386620|ref|ZP_08208242.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208935|gb|EGD59730.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 663

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 83/450 (18%), Positives = 143/450 (31%), Gaps = 48/450 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      ++ L    +   + G   W P G +    + A +R   +  G 
Sbjct: 240 LTRLEEAAKRDHRKLGQEMDLF--HLQAEAHGSVFWHPKGYRIWRELEAYMRRAIDGAGY 297

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-------------AMIYGPTHEEV 113
            E+  P +  A  W  SG +  Y + M  + D                  M   P +   
Sbjct: 298 REVKTPQVMDARQWEASGHWGKYRENMFVIPDEVPNVEDEGPLVSDDAAWMALKPMNCPA 357

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFR  IKSYR LP  FY+     R+E      G+MR R+F   DA+ F    +  + 
Sbjct: 358 HVLIFRQGIKSYRELPLRFYENGCCHRNEPHGALHGLMRVRQFTQDDAHIFCREDQIVEE 417

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                     RI+   G      +    P     S E     D  E ++  +        
Sbjct: 418 -VRAFCELADRIYKDFGFTYAI-KLALRPEKRFGSDEMW---DQAEAELRNAVAAAGLAT 472

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
           P               +    A YA   + H   L D++    +V     +         
Sbjct: 473 PEYG---------WEELPGEGAFYAPKLEWH---LTDAIGRTWQVGTIQSDRVLP----- 515

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                + A++ G DG+ H    +     G+      ++     GK  +W   V     ++
Sbjct: 516 ---ERLDASYIGEDGERHRPVMLHRAIFGSYERFIGILIEHFAGKLPVWLAPVQAVVATI 572

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +             ++    L+  G  V  D   E+I  +     L   P  ++VG +  
Sbjct: 573 V------SDADGYAQETVQTLAAAGIRVEADTRNEKINYKVREHSLQKVPFLLVVGKREA 626

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +  V ++      ++ + L E I      
Sbjct: 627 EEGTVAVRRLGEQQQKVLPLAEAIALIKGE 656


>gi|223044090|ref|ZP_03614129.1| threonyl-tRNA synthetase [Staphylococcus capitis SK14]
 gi|222442484|gb|EEE48590.1| threonyl-tRNA synthetase [Staphylococcus capitis SK14]
          Length = 645

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 155/445 (34%), Gaps = 33/445 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQMLEERRERDHRKIGKDLELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y  +M      ++   M+  P +      I+ +  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQDDMFPPMKLDETEEMVLRPMNCPHHMMIYNNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++     
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIQ 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDD 241
            ++   G K    R                  D  + + +   D M     S      D+
Sbjct: 408 EVYEDFGFKDYTFRLS--------------YRDPEDKEKYMDDDEMWNKAESMLKEAVDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  ++ + + +S   ++    F    ++      T
Sbjct: 454 MGLPYVEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERF----ELT 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G+DG+ H   +   G+ +         +           +    +I  +N+  H    
Sbjct: 503 YIGSDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVEIIPVNVDLH---- 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++  
Sbjct: 559 YDYARQLQDELKSQGVRVEIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNEVNVRQY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +  +E +  +E I          +
Sbjct: 619 GSQDQETLEKDEFIWNLVDEIRLKK 643


>gi|170699968|ref|ZP_02890995.1| prolyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
 gi|170135116|gb|EDT03417.1| prolyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
          Length = 578

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 139/288 (48%), Positives = 183/288 (63%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDTAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +       DF    E  +  
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYCPT-SDFAANIEAAEAL 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
               +  +    +E+   P  A  +   E L   L    +      E 
Sbjct: 240 PLIAERAAPAEAMEKVATPGKAKCEAVAELLAIPLERTIKSIVLATEN 287



 Score =  176 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 105/189 (55%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +DV + K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   + MG
Sbjct: 385 EVADVRDVKKGDPSPDGKGTIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPMLMG 444

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSK 374
            YG+G  R++ A IE + D KGIIWP+S+APF++ L  +      + R+A +K+YA L+ 
Sbjct: 445 CYGVGVTRILGAAIEQNFDDKGIIWPESIAPFEVVLCPMGYDRSDMVREAADKLYAELAA 504

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R       +  +E 
Sbjct: 505 AGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKIEYQGRRDAEATLLPADEA 564

Query: 435 INYASHRFS 443
               + +  
Sbjct: 565 AATVTEKIR 573


>gi|217972680|ref|YP_002357431.1| prolyl-tRNA synthetase [Shewanella baltica OS223]
 gi|254782915|sp|B8EDD0|SYP_SHEB2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|217497815|gb|ACK46008.1| prolyl-tRNA synthetase [Shewanella baltica OS223]
          Length = 571

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 120/237 (50%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWEKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +       D+    E  
Sbjct: 181 YSNILTRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAY-STGSDYAANIEKA 236



 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPTAQVADIRNVVEGEPTPDGSGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GIIWP+++APF + ++ +    
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIIWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  L++ G DV  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLNEAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG ++D+  ++++++  +   
Sbjct: 545 YKNRRTGEKQDIPFDQLLDFLKNAVK 570


>gi|171316236|ref|ZP_02905459.1| prolyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
 gi|171098650|gb|EDT43447.1| prolyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
          Length = 578

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 139/288 (48%), Positives = 183/288 (63%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDTAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +       DF    E  +  
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYCPT-SDFAANIEAAEAL 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
               +  +    +E+   P  A  +   E L   L    +      E 
Sbjct: 240 PLIAERAAPAEAMEKVATPGKAKCEAVAELLAIPLERTIKSIVLATEN 287



 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV + K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPEVADVRDVKKGDPSPDGKGTIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YG+G  R++ A IE + D +GIIWP+S+APF++ L  +      + R+A +K+YA 
Sbjct: 442 LMGCYGVGVTRILGAAIEQNFDDRGIIWPESIAPFEVVLCPMGYDRSDMVREAADKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R       +  
Sbjct: 502 LTAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKIEYQGRRDAEATLLPA 561

Query: 432 EEVINYASHRFS 443
           +E     + +  
Sbjct: 562 DEAAATVTEKIR 573


>gi|332993607|gb|AEF03662.1| threonyl-tRNA synthetase [Alteromonas sp. SN2]
          Length = 638

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 143/447 (31%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L      + + G+  W   G      +   +RE+
Sbjct: 227 KQLKAYLQRLEEAEKRDHRKIGKALNLF--HWQEEAPGMVFWHNDGWSIYTELEKFVREK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW +SG ++ Y + M    +   +     P +      IF  
Sbjct: 285 LRDYTYDEVKGPLMMDRSLWEKSGHWEKYAENMFT-TESEKREYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +  +   +    
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQILEE-VSGCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G   + ++  + P     S E                   D    +     
Sbjct: 403 MVYETYAAFGFDKVAVKLSTRPEKRVGSDE-----------------IWDKSEAALAEAL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                         A Y    +     L D L    +     ++       G+       
Sbjct: 446 KANDIEFEYQPGEGAFYGPKIEF---TLHDCLNRAWQCGTVQLDFSMPGRLGS------- 495

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+   DG+    V +    +G++     ++     G   +W        +++       
Sbjct: 496 -TYVAEDGERKVPVMIHRAILGSLERFIGILTEEFAGFFPLWLAPQQVVILNIT------ 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  ++   +L K G     D   E+IG +     L   P  ++VG K +   +V +
Sbjct: 549 DSQGEYAQECVKKLQKSGFRAKSDLRNEKIGFKIREHTLKRVPYMLVVGDKEMEAGEVAV 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       MSLE  I  A+   +  
Sbjct: 609 RSRSGDDLGKMSLESFIAMANQEVAEK 635


>gi|332292754|ref|YP_004431363.1| threonyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170840|gb|AEE20095.1| threonyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 648

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 153/448 (34%), Gaps = 40/448 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L T    +  +G+  WLP G    + +   ++  Q 
Sbjct: 228 LKEYLELIEEAKKRDHRKLGKELELFT-FSQRVGQGLPLWLPKGAALRERLENFLKAAQK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G   +  P +   +L+  SG Y+ YG +  +        +  +  P +     +I+ S
Sbjct: 287 KQGYEMVVSPHIGQKELYETSGHYEKYGADSFQPILTPNEGEEFLLKPMNCPHHCEIYNS 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SY+ LP  F +    +R E      G+ R R F   DA+ F  TP+     + K+  
Sbjct: 347 RPWSYKELPKRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPDQLDEEFMKVID 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG ++   +                  D  + + +   D       +   + 
Sbjct: 406 LVLYVFGSLGFENFTAQVSLR--------------DPEKPEKYIGADENWVKAENAILNA 451

Query: 240 DDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSL 296
                LN +VE    A Y    D     + D+L  + ++    ++      F    K S 
Sbjct: 452 AKAKGLNYVVETGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLPERFELQYKGSD 508

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                          V +     G+M    A++     G   +W        ++L     
Sbjct: 509 NEM---------HRPVMIHRAPFGSMERFIAILLEHTGGNFPLWLMPQQATILTL----- 554

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +      + +   L         D+ GE +G +   A++   P  +I+G +  +D  +
Sbjct: 555 -SEKYEKYAQNVLTLLENHEIRAIIDNRGETMGKKIREAEMQKLPFMIIIGEQEENDGTI 613

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++         M+++      +   ++
Sbjct: 614 SVRRHGGEDLGSMTIDAFAKMVNAEIAS 641


>gi|153001389|ref|YP_001367070.1| prolyl-tRNA synthetase [Shewanella baltica OS185]
 gi|166980156|sp|A6WQB8|SYP_SHEB8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|151366007|gb|ABS09007.1| prolyl-tRNA synthetase [Shewanella baltica OS185]
          Length = 571

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 120/237 (50%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWEKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +       D+    E  
Sbjct: 181 YSNILTRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAY-STGSDYAANIEKA 236



 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPTAQVADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GIIWP+++APF + ++ +    
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIIWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  L++ G DV  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLNEAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG ++D+  ++++++  +   
Sbjct: 545 YKNRRTGEKQDIPFDQLLDFLKNAVK 570


>gi|117919846|ref|YP_869038.1| prolyl-tRNA synthetase [Shewanella sp. ANA-3]
 gi|152016600|sp|A0KV13|SYP_SHESA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|117612178|gb|ABK47632.1| prolyl-tRNA synthetase [Shewanella sp. ANA-3]
          Length = 570

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 122/237 (51%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDVDTMNETYEAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +       D+    E  
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAY-STGSDYAANIEKA 236



 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 71/204 (34%), Positives = 111/204 (54%), Gaps = 3/204 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +    
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  LS VG DV  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLSAVGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
            K+R TG ++D+  ++++++  + 
Sbjct: 545 YKNRRTGEKQDVPFDQIVDFLKNL 568


>gi|114046916|ref|YP_737466.1| prolyl-tRNA synthetase [Shewanella sp. MR-7]
 gi|122944801|sp|Q0HWU6|SYP_SHESR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|113888358|gb|ABI42409.1| prolyl-tRNA synthetase [Shewanella sp. MR-7]
          Length = 570

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 122/237 (51%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDVDTMNETYEAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +       D+    E  
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAY-STGSDYAANIEKA 236



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 110/204 (53%), Gaps = 3/204 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +    
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  LS  G DV  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLSAAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
            K+R TG ++D+  ++++++  + 
Sbjct: 545 YKNRRTGEKQDVPFDQIVDFLKNL 568


>gi|113969687|ref|YP_733480.1| prolyl-tRNA synthetase [Shewanella sp. MR-4]
 gi|123130574|sp|Q0HKJ4|SYP_SHESM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|113884371|gb|ABI38423.1| prolyl-tRNA synthetase [Shewanella sp. MR-4]
          Length = 570

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 122/237 (51%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDVDTMNETYEAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +       D+    E  
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAY-STGSDYAANIEKA 236



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 110/204 (53%), Gaps = 3/204 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +    
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  LS  G DV  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLSAAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
            K+R TG ++D+  ++++++  + 
Sbjct: 545 YKNRRTGEKQDVPFDQIVDFLKNL 568


>gi|91793895|ref|YP_563546.1| prolyl-tRNA synthetase [Shewanella denitrificans OS217]
 gi|123060765|sp|Q12L53|SYP_SHEDO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91715897|gb|ABE55823.1| prolyl-tRNA synthetase [Shewanella denitrificans OS217]
          Length = 571

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 123/237 (51%), Positives = 164/237 (69%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YSWLP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSWLPSGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW+E+GR++ +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPLVQPADLWIETGRWEKFGPELLRFQDRHNRDFVLGPTHEEVITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP + YQIQ KFRDE+RPRFGVMR+REFLMKDAYSF L       +Y  MF +
Sbjct: 121 EVSSYKQLPLSLYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHLDQGTMDETYQAMFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF R+GL   P+ A++G IGG LSHEF VLA++GE  +       D+    E  
Sbjct: 181 YNNIFTRMGLAFRPVLADTGSIGGSLSHEFHVLANSGEDLIAY-STGSDYAANIEKA 236



 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    ++ P+       ARGIEVGHIF  GT YS  M+AT    +GK   +
Sbjct: 379 PLATAADIRNVVEGEATPDGLGTYAMARGIEVGHIFQLGTNYSKAMNATVLDENGKSQVM 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE +HD +GI+ P+++APF + ++ +         D  EK+Y  
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNHDDRGIMLPEALAPFTVGILPMNMHKSHRVADIAEKLYQD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +V  DD  E+ G  FA  +L+G P  V++G + +     E K+R TG ++D+ L
Sbjct: 499 LNDAGIEVLLDDRKERPGVMFADMELIGLPHVVVIGDRNIDAGVFEYKNRRTGEKQDIPL 558

Query: 432 EEVINYASHRFS 443
           ++++++      
Sbjct: 559 DQIVDFLKSSLK 570


>gi|110834994|ref|YP_693853.1| threonyl-tRNA synthetase [Alcanivorax borkumensis SK2]
 gi|110648105|emb|CAL17581.1| Threonyl-tRNA synthetase [Alcanivorax borkumensis SK2]
          Length = 638

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 156/447 (34%), Gaps = 42/447 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
             +L  L+E   RD    + ++ L    I Q + G   W P G +   N+   IR +  +
Sbjct: 231 NAYLKQLEEAEKRDHRKLAKEMGLF--HIQQEAVGSMFWHPKGWRMRKNLENYIRGKMEK 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+S P +    LW +SG +D YG++M  +   + K M   P +      IF+  I 
Sbjct: 289 GGYEEVSTPQMMDRILWEQSGHWDKYGEDMFTVCTHDHKEMAVKPMNCPGHVQIFKQGIT 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +    FR+E      G+MR+R F   DA+ F  T E              
Sbjct: 349 SYRDLPIRLGEFTTLFRNEAHGALHGLMRARSFSQDDAHIFC-TEEQVNEETAGFIKMLR 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G  S  ++    P     S E                   D    +  +  + +
Sbjct: 408 EVYADFGFDSFRIKFSDRPDNRAGSDE-----------------TWDKAEGALRSAVESL 450

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    +     L D++  + +     ++    F    +    + A +
Sbjct: 451 GLECELNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVD----FVLPDR----LDAEY 499

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG       +    +G++     ++  S  G   +W         ++ N        
Sbjct: 500 VAEDGSRQRPVMLHRAVLGSLERFLGILIESTAGHLPLWLAPRPVAVCTITN------SA 553

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +    +  +L   G     D   E+IG +         P   ++G +    ++V I+  
Sbjct: 554 DEYATTVQQKLVAAGIPAELDIRNEKIGFKVREHSRAKTPRIWVIGEQEAQHNQVAIRTL 613

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPV 448
            +   E + L+E +   +   +   P+
Sbjct: 614 GSQATETVDLDEAVAALAE--ATRLPI 638


>gi|322437350|ref|YP_004219562.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
 gi|321165077|gb|ADW70782.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
          Length = 687

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 161/442 (36%), Gaps = 38/442 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
              L+E   RD  +   +L L +  I + +  G+  W P G      +   +RE+  + G
Sbjct: 276 FKRLEEIKARDHRVLGKQLDLFS--IQEVAGAGLIFWHPKGGLIRKAMEDWMREDCIKRG 333

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   +LW  SG  ++YG+ M    + +D      P +      I+++  KSY
Sbjct: 334 YEMVFTPHIMRRELWKISGHEENYGENMYPPMELDDAEYRLKPMNCPGHILIYKNSPKSY 393

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + ++   +R E      G++R R F   DA+ F  TP   +            +
Sbjct: 394 RDLPVRYAELGNVYRYERSGTMHGLLRVRGFTQDDAHIFC-TPGQIEDEVTACIEFAESV 452

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +  G     +   +               D  + +   S +     + S     +    
Sbjct: 453 LNTFGFHEFKVELST--------------WDPNDKKFIGSAEQWGVAVGSLRNALERKGI 498

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    D+   KL D L    ++S    +    +    ++ L     +KG
Sbjct: 499 PYKTIPGEAAFYGPKIDI---KLVDVLGRMWQLSTVQFD----WNLPARFDLH----YKG 547

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     V+   + G    W   +AP ++ L+ I    +   +
Sbjct: 548 EDGELHQPVMVHRALFGSVERFFGVLIEHYAGAFPFW---LAPVQVGLVPI---SEKHLE 601

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +  RL   G  V  D+  E++ ++     +   P  +I+G K     +V ++ R  
Sbjct: 602 YARTVQQRLKDAGVRVELDERNEKMNAKIREFGVNKVPFILIMGDKESQSDEVSVRTRGK 661

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    MS E  +        ++
Sbjct: 662 GDGGAMSTEAFVARCLELQKSH 683


>gi|160876111|ref|YP_001555427.1| prolyl-tRNA synthetase [Shewanella baltica OS195]
 gi|189083513|sp|A9KVR8|SYP_SHEB9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160861633|gb|ABX50167.1| prolyl-tRNA synthetase [Shewanella baltica OS195]
 gi|315268308|gb|ADT95161.1| prolyl-tRNA synthetase [Shewanella baltica OS678]
          Length = 571

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 120/237 (50%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWEKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +       D+    E  
Sbjct: 181 YSNILTRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAY-STGSDYAANIEKA 236



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+   +   ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPLAQVADIRNVVEGEPTPDGSGIYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GIIWP+++APF + ++ +    
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIIWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  L++ G DV  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLNEAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG ++D+  ++++++  +   
Sbjct: 545 YKNRRTGEKQDIPFDQLLDFLKNAVK 570


>gi|260557205|ref|ZP_05829421.1| prolyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
 gi|260409311|gb|EEX02613.1| prolyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
          Length = 571

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 127/253 (50%), Positives = 173/253 (68%), Gaps = 1/253 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+D   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHDNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +       D+    E  +  
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAF-STESDYAANVEMAEAV 239

Query: 241 DIISLNSIVEQWT 253
            +    +  +++ 
Sbjct: 240 LVGERAAPTQEFK 252



 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 72/192 (37%), Positives = 104/192 (54%), Gaps = 3/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A      D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G DGK
Sbjct: 379 ERDAQITEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGEDGK 438

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              V MG YGIG  RVVAA IE ++D KGIIWP ++APF+I+++ + A       +A E 
Sbjct: 439 PFTVTMGCYGIGVTRVVAAAIEQNYDDKGIIWPQAIAPFEIAIVPMNAHKSPRTLEAAEA 498

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA L   G D+  DD  E+ G +F+  +L+G P ++++G K +     E K R      
Sbjct: 499 LYAELQAQGFDLLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDAEAS 558

Query: 428 DMSLEEVINYAS 439
           +++ EE++   +
Sbjct: 559 NLTKEELLAKLA 570


>gi|184159387|ref|YP_001847726.1| prolyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|239501767|ref|ZP_04661077.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB900]
 gi|332876227|ref|ZP_08444002.1| proline--tRNA ligase [Acinetobacter baumannii 6014059]
 gi|226695842|sp|B2HY33|SYP_ACIBC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226731481|sp|A3M8I1|SYP_ACIBT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|183210981|gb|ACC58379.1| Prolyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|193078264|gb|ABO13225.2| prolyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
 gi|322509299|gb|ADX04753.1| proS [Acinetobacter baumannii 1656-2]
 gi|323519326|gb|ADX93707.1| prolyl-tRNA synthetase [Acinetobacter baumannii TCDC-AB0715]
 gi|332735499|gb|EGJ66551.1| proline--tRNA ligase [Acinetobacter baumannii 6014059]
          Length = 571

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 127/253 (50%), Positives = 173/253 (68%), Gaps = 1/253 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+D   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHDNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +       D+    E  +  
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAF-STESDYAANVEMAEAV 239

Query: 241 DIISLNSIVEQWT 253
            +    +  +++ 
Sbjct: 240 LVGERAAPTQEFK 252



 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 73/192 (38%), Positives = 104/192 (54%), Gaps = 3/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A      D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G DGK
Sbjct: 379 ERDAQITEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGEDGK 438

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              V MG YGIG  RVVAA IE ++D KGIIWP ++APF+I+++ + A       +A E 
Sbjct: 439 PFTVTMGCYGIGVTRVVAAAIEQNYDDKGIIWPQAIAPFEIAIVPMNAHKSPRTLEAAEA 498

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R      
Sbjct: 499 LYAELQAQGFDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDAEAS 558

Query: 428 DMSLEEVINYAS 439
           +++ EE++   +
Sbjct: 559 NLTKEELLAKLA 570


>gi|169794838|ref|YP_001712631.1| prolyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|213157835|ref|YP_002320633.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|215482385|ref|YP_002324567.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|301345755|ref|ZP_07226496.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB056]
 gi|301511535|ref|ZP_07236772.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB058]
 gi|301594855|ref|ZP_07239863.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB059]
 gi|332852292|ref|ZP_08434097.1| proline--tRNA ligase [Acinetobacter baumannii 6013150]
 gi|332870515|ref|ZP_08439279.1| proline--tRNA ligase [Acinetobacter baumannii 6013113]
 gi|226695840|sp|B7GWV6|SYP_ACIB3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226695841|sp|B7I854|SYP_ACIB5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226731418|sp|B0V4Y6|SYP_ACIBY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169147765|emb|CAM85628.1| prolyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|213056995|gb|ACJ41897.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|213986493|gb|ACJ56792.1| prolyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|332729422|gb|EGJ60762.1| proline--tRNA ligase [Acinetobacter baumannii 6013150]
 gi|332732252|gb|EGJ63520.1| proline--tRNA ligase [Acinetobacter baumannii 6013113]
          Length = 571

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 127/253 (50%), Positives = 173/253 (68%), Gaps = 1/253 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+D   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHDNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +       D+    E  +  
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAF-STESDYAANVEMAEAV 239

Query: 241 DIISLNSIVEQWT 253
            +    +  +++ 
Sbjct: 240 LVGERAAPTQEFK 252



 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 73/192 (38%), Positives = 104/192 (54%), Gaps = 3/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A      D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G DGK
Sbjct: 379 ERDAQITEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGEDGK 438

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              V MG YGIG  RVVAA IE ++D KGIIWP ++APF+I+++ + A       +A E 
Sbjct: 439 PFTVTMGCYGIGVTRVVAAAIEQNYDDKGIIWPQAIAPFEIAIVPMNAHKSPRTLEAAEA 498

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R      
Sbjct: 499 LYAELQAQGFDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDAEAS 558

Query: 428 DMSLEEVINYAS 439
           +++ EE++   +
Sbjct: 559 NLTKEELLAKLA 570


>gi|304409899|ref|ZP_07391518.1| prolyl-tRNA synthetase [Shewanella baltica OS183]
 gi|307302394|ref|ZP_07582152.1| prolyl-tRNA synthetase [Shewanella baltica BA175]
 gi|304351308|gb|EFM15707.1| prolyl-tRNA synthetase [Shewanella baltica OS183]
 gi|306914432|gb|EFN44853.1| prolyl-tRNA synthetase [Shewanella baltica BA175]
          Length = 571

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 120/237 (50%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWEKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +       D+    E  
Sbjct: 181 YSNILTRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAY-STGSDYAANIEKA 236



 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DHKHYFGINWERDLPTAQVADIRNVVEGEPTPDGSGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GIIWP+++APF + ++ +    
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIIWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  L++ G DV  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLNEAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG ++D+  ++++++  +   
Sbjct: 545 YKNRRTGEKQDIPFDQLLDFLKNAVK 570


>gi|294140027|ref|YP_003556005.1| prolyl-tRNA synthetase [Shewanella violacea DSS12]
 gi|293326496|dbj|BAJ01227.1| prolyl-tRNA synthetase [Shewanella violacea DSS12]
          Length = 569

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 127/240 (52%), Positives = 167/240 (69%), Gaps = 1/240 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P DAE+ SH+LMLR GM+ +++ G+YSWLP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPADAEVVSHQLMLRAGMVRRNASGLYSWLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q ADLW+E+GR++ +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 61  MNKAGAVEILMPMVQPADLWIETGRWEKFGPELLRFQDRHNRDFVLGPTHEEVITDIIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E    +Y+ MF +
Sbjct: 121 EINSYKQLPLTLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDQESMDVTYDAMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL   P+ A++G IGG +SHEF VLAD+GE  +       D+    E  +  
Sbjct: 181 YNNIFERMGLSFRPVLADTGSIGGSMSHEFHVLADSGEDLIAY-STESDYAANIEKAEAP 239



 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 70/203 (34%), Positives = 110/203 (54%), Gaps = 3/203 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P  K   A  RGIEVGHIF  GT YS  M
Sbjct: 365 DNKHYFGINWERDLPQAEAADLRNIIEGEPSPCGKGTIALLRGIEVGHIFQLGTNYSESM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
            A     +GK   + MG YG+G  R+VAA IE +HD +GIIWP ++APF + ++ +    
Sbjct: 425 HANVLDQNGKSKTLLMGCYGVGVSRIVAAAIEQNHDDRGIIWPKAIAPFTVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +D  EK+Y  L+  G +V +DD  E+ G  FA  +L+G P  V++G + + +   E
Sbjct: 485 SHRVKDIAEKLYQDLNDAGIEVLFDDRKERPGVMFADMELVGLPHVVVIGDRNIDNGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASH 440
            K+R TG ++++  ++++++   
Sbjct: 545 YKNRRTGEKQEIPFDQLLDFLKS 567


>gi|325528042|gb|EGD05262.1| prolyl-tRNA synthetase [Burkholderia sp. TJI49]
          Length = 578

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 137/288 (47%), Positives = 184/288 (63%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGALELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   EG   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAEGLNESYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +       +F    E  +  
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYCPT-SEFAANVEAAEAL 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
               +  +    +E+   P  A  +   E L   L    +      + 
Sbjct: 240 SLIAERAAPAEAMEKVATPGKAKCEAVAELLGIPLERTIKSIVLATDN 287



 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 76/192 (39%), Positives = 106/192 (55%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPEVADVRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D KGIIWP+S+APF++ L  +        R+A +K+YA 
Sbjct: 442 LMGCYGIGVTRILGAAIEQNFDDKGIIWPESIAPFEVVLCPMGYDRSDAVREAADKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LS  G DV  DD GE+ G  FA  +L+G P +V++G + + + K+E + R       +  
Sbjct: 502 LSAAGIDVILDDRGERPGVMFADWELIGVPHRVVIGERGLKEGKIEYQGRRDAEATLLPA 561

Query: 432 EEVINYASHRFS 443
           + V    + +  
Sbjct: 562 DAVAATVAEKIR 573


>gi|221133881|ref|ZP_03560186.1| prolyl-tRNA synthetase [Glaciecola sp. HTCC2999]
          Length = 570

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 119/235 (50%), Positives = 167/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR+GM+ + + G+Y++LP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVVSHQLMLRSGMVRKVASGLYNYLPTGLRVLNKVANIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW ESGR++ YG E+LR+ DR+ +  + GPTHEEV+T + R+
Sbjct: 61  MNKAGAIEIQMPVVQPADLWEESGRWEEYGPELLRIKDRHQRDFVLGPTHEEVVTALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REFLMKDAYSF L+ +  + +Y+KMF +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGIMRGREFLMKDAYSFHLSQDCLQTTYDKMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  +F R+GL+  P+ A++G IGG  SHEF VLAD+GE  +    +  D+    E
Sbjct: 181 YCNVFERIGLEYRPVIADNGSIGGSGSHEFHVLADSGEDDIAF-SNGSDYAANVE 234



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 103/192 (53%), Gaps = 3/192 (1%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
             P     D+ N +  D  P  +      RGIEVGHIF  G KYS  M+       GK  
Sbjct: 379 DVPEYEVFDLRNIQAGDPSPCGQGTIEIKRGIEVGHIFQLGNKYSQAMNCGVLTETGKHE 438

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIY 369
            + MG YGIG  R++AA IE +HD  GI WPD++APF I++I +        ++  EK+Y
Sbjct: 439 TLTMGCYGIGVSRIMAAAIEQNHDKYGIKWPDAIAPFTIAIIPMNMHKSHRIKEVAEKLY 498

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
                +G +V +DD  E+ G  F   +L+G P  +++G + + + +VE K+R TG ++ +
Sbjct: 499 EECLALGVEVLFDDRKERPGVMFNDMELIGVPHSIVIGERNLDNQEVEYKNRRTGEKKML 558

Query: 430 SLEEVINYASHR 441
           ++ ++  +  + 
Sbjct: 559 NIADLSEFIGNL 570


>gi|56475942|ref|YP_157531.1| prolyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
 gi|81821206|sp|Q5P7T1|SYP_AZOSE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56311985|emb|CAI06630.1| prolyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
          Length = 583

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 158/235 (67%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+  L+E P DAE+ S KLMLR G I + + GIYS+LP+G + +  V  I+R+E
Sbjct: 1   MRASQYFISTLKEAPSDAEVVSQKLMLRAGFIRKVAAGIYSYLPIGLRVIRKVEDIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+LW E+GR++  G EMLR  DR+ +     PT EEV+TDI R 
Sbjct: 61  MNRAGALELTMPLVQPAELWDETGRWEQMGAEMLRFKDRHQRDFALQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQIQ KFRDE RPRFGVMR REF MKDAYSFD     +  SY+ M+ +
Sbjct: 121 ELKSYRQLPKNFYQIQTKFRDERRPRFGVMRGREFTMKDAYSFDRDVAAAGRSYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL    + A++G IGGD SHEF V+ADTGE  +       D+    E
Sbjct: 181 YCRIFDRLGLTYRAVAADTGAIGGDRSHEFQVIADTGEDAIVYC-PGSDYAANIE 234



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 68/188 (36%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P    +    RGIEVGH+FY GTKYS  M+ATF   +GK  + +MG 
Sbjct: 393 VADLRNIIEGDPSPDGRGRLAIQRGIEVGHVFYLGTKYSQSMNATFLDENGKPKHFEMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R++ A IE +HD +GIIWPD++APF++ +  +        R    K+Y  L   
Sbjct: 453 YGIGVTRILGAAIEQNHDARGIIWPDAIAPFRVVVCPVGWGKSDAVRTEATKLYETLCAG 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P +V++G + + D   E + R       + L E+ 
Sbjct: 513 GIDVILDDRDERPGVMFADWELIGVPHRVVIGDRGLKDGMAEYQGRRDAEAAKIPLAELA 572

Query: 436 NYASHRFS 443
            +   +  
Sbjct: 573 AFVGSKLR 580


>gi|314933837|ref|ZP_07841202.1| threonine--tRNA ligase [Staphylococcus caprae C87]
 gi|313653987|gb|EFS17744.1| threonine--tRNA ligase [Staphylococcus caprae C87]
          Length = 645

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 155/445 (34%), Gaps = 33/445 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQMLEERRERDHRKIGKDLELFTN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y  +M      ++   M+  P +      I+ +  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQDDMFPPMKLDETEEMVLRPMNCPHHMMIYNNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++     
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIQ 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDD 241
            ++   G K    R                  D  + + +   D M     S      D+
Sbjct: 408 EVYEDFGFKDYTFRLS--------------YRDPEDKEKYMDDDEMWNKAESMLKEAVDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  ++ + + +S   ++    F    ++      T
Sbjct: 454 MGLPYVEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERF----ELT 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G+DG+ H   +   G+ +         +           +    +I  +N+  H    
Sbjct: 503 YIGSDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVEIIPVNVDLH---- 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++  
Sbjct: 559 YDYARQLQDELKSQGVRVEIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNEVNVRQY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +  +E +  +E I          +
Sbjct: 619 GSQDQETLEKDEFIWNLVDEIRLKK 643


>gi|83720100|ref|YP_441693.1| prolyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|167618612|ref|ZP_02387243.1| prolyl-tRNA synthetase [Burkholderia thailandensis Bt4]
 gi|257137862|ref|ZP_05586124.1| prolyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|114152178|sp|Q2SZF6|SYP_BURTA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|83653925|gb|ABC37988.1| prolyl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 578

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 131/235 (55%), Positives = 169/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  +       DF    E
Sbjct: 181 YVRIFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPT-SDFAANVE 234



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/192 (37%), Positives = 105/192 (54%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPVIADIRNVKAGDPSPDGKGVLDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D KGIIWP+++APF++ L  +        R+A +K+YA 
Sbjct: 442 VMGCYGIGVTRILGAAIEQNFDDKGIIWPEAIAPFEVVLCPMGYDRSDAVREAADKLYAD 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       +  
Sbjct: 502 LAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGRRDAEATLLPA 561

Query: 432 EEVINYASHRFS 443
           +      + +  
Sbjct: 562 DSAATAVAEKVR 573


>gi|115350544|ref|YP_772383.1| prolyl-tRNA synthetase [Burkholderia ambifaria AMMD]
 gi|122324080|sp|Q0BIH4|SYP_BURCM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|115280532|gb|ABI86049.1| prolyl-tRNA synthetase [Burkholderia ambifaria AMMD]
          Length = 578

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 140/288 (48%), Positives = 183/288 (63%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REFLMKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFLMKDAYSFDKDTAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +       DF    E  +  
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYCPT-SDFAANIEAAEAL 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
               +  +    +E+   P  A  +   E L   L    +      E 
Sbjct: 240 PLIAERAAPAEAMEKVATPGKAKCEAVAELLAIPLERTIKSIVLATEN 287



 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 106/192 (55%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV + K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPEVADVRDVKKGDPSPDGKGTIDICRGIEVGHVFQLGTKYSDAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YG+G  R++ A IE + D KGIIWP+S+APF++ L  +      + R+A +K+YA 
Sbjct: 442 LMGCYGVGITRILGAAIEQNFDDKGIIWPESIAPFEVVLCPMGYDRSDMVREAADKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R       +  
Sbjct: 502 LAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKIEYQGRRDAEATLLPA 561

Query: 432 EEVINYASHRFS 443
           +E     + +  
Sbjct: 562 DEAAATVTEKIR 573


>gi|302391162|ref|YP_003826982.1| prolyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501]
 gi|302203239|gb|ADL11917.1| prolyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501]
          Length = 569

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 133/390 (34%), Positives = 194/390 (49%), Gaps = 5/390 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ + P L+E P DAE+ SH+LMLR G++ +   GIYS LPLG K +  V  IIREE
Sbjct: 1   MKMSQMYSPTLKETPADAEVVSHQLMLRAGLMRKLGSGIYSHLPLGYKVIQKVEDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P LQ A+LW ES R+  YG E++RL DR+ +    GPTHEEV+TD+ + 
Sbjct: 61  MNKAGAQEVLLPALQPAELWKESNRWADYGPELMRLEDRHKRDFCLGPTHEEVITDLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LPF  YQIQ KFRDE+RPRFGV+RSREF+MKDAYSF+   E    SY KM+ S
Sbjct: 121 EVRSYKDLPFNLYQIQTKFRDEIRPRFGVLRSREFIMKDAYSFNPDKESLDESYEKMYDS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF---MDFPIPSENT 237
           Y+ IF R GL    + A++GPIGG  SHEF+VLAD+GE  V    +     +  +   + 
Sbjct: 181 YVEIFDRCGLDFRTVVADNGPIGGTDSHEFMVLADSGEDTVVFCSECDYSANLELADSDI 240

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +F         +E+   P A T +   E    S  +  +      + G++          
Sbjct: 241 EFTTTDDKPQELEKVETPGADTIEDLAEFFNCSTKKLLKSLIYQTQDGYVLALVRGDYQL 300

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                +   G        +  +     +        D    +   +       +  +   
Sbjct: 301 NEVKLRNFLGTAALEMAPAEELFNDTGIVTGFAGPVDIPDEVRVIADPSAMAVVNGVTGA 360

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++                  D   D    +
Sbjct: 361 NEADYHYTN--VNPERDFTVDAIVDIREIK 388



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 105/189 (55%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A  D+   K  +   +   +    RGIEVG +F  GTKYS  M AT+   +GK   + MG
Sbjct: 380 AIVDIREIKEGEPCIDCGAELTMTRGIEVGQVFKLGTKYSDSMKATYIDDNGKSQSIFMG 439

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R VAA IE +HD  GIIWP S+AP+ + ++ +  +D+  +   E +Y  L++ 
Sbjct: 440 CYGIGVTRTVAAAIEQNHDDYGIIWPKSIAPYSVHIMQLG-NDEEIKRVSEDLYTALNQT 498

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +  +DD  E+ G +F  ADL+G P+QVI+G   + D+K+EIK R T  +  ++ +  +
Sbjct: 499 GLEALYDDRSERAGVKFNDADLIGCPIQVIIGKNSLEDNKLEIKLRQTDEKLKINADNPV 558

Query: 436 NYASHRFSN 444
                  + 
Sbjct: 559 PKIKELLAK 567


>gi|261855919|ref|YP_003263202.1| threonyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
 gi|261836388|gb|ACX96155.1| threonyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
          Length = 637

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 70/438 (15%), Positives = 144/438 (32%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +  L      + + G+  W P G      +   +R     +G
Sbjct: 231 YLNQLAEAEKRDHRRIGKQQNLF--HFQEEAPGLVFWHPKGWALWQVIEQHMRGIYRSSG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG +D+Y + M    +   +     P +      +F   + SY
Sbjct: 289 YDEIRCPQILDVSLWKKSGHWDNYQENMF-FTESEKRTFAVKPMNCPGHVQVFNHGLHSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G++R R F   D + F +     +          L +
Sbjct: 348 RDLPIRYGEFGSCHRNEPSGALHGILRVRGFTQDDGHIFCM-ESQIESEVKAFHEQALSV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P                      S    D    +          
Sbjct: 407 YATFGFTDIQVKIALRPDKR-----------------LGSDVVWDEAEAALRGALRAAGV 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             + +    A Y    + H   L D++    ++    ++       G        AT+  
Sbjct: 450 AWTELPGEGAFYGPKIEYH---LKDAIGRTWQLGTIQVDFMMPERLG--------ATYVD 498

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               + H V +    +G+M     ++   H G    W   +AP ++ ++ I         
Sbjct: 499 EHSERRHPVMLHRAIVGSMERFIGILIEHHAGMLPFW---LAPIQVVVMGITDKHAG--- 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++ A+L   G  V  D   E++G +     L   P  ++ G + +    + ++ R  
Sbjct: 553 YVQQLTAKLKASGIRVVEDLRNEKVGFKIREHTLERVPYLLVAGDREMETESIAVRTREG 612

Query: 424 GIREDMSLEEVINYASHR 441
                M++ +++      
Sbjct: 613 TDLGVMAVTDLLEKLQSE 630


>gi|116515089|ref|YP_802718.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116256943|gb|ABJ90625.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 422

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 148/430 (34%), Positives = 231/430 (53%), Gaps = 23/430 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M   KY L  L+E P++ E  SH+LMLR+GMI   S GIY+WLP G + +  +  II   
Sbjct: 1   MYTKKYLLSTLKEKPKNIESISHQLMLRSGMIRMLSSGIYTWLPTGYRIIKKITKIISSI 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G +E+ +P +Q  +LW +SGR   YG+E++++ DR +K  +  PTHEE +  I + 
Sbjct: 61  LNNHGCMEICMPIIQPENLWKKSGRKKLYGEELIKITDRRNKKYVLSPTHEEAINYICQQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP TFYQIQ KFRDE+RPRFGV+R+ EFLMKDAYSF +  +  K +Y  M   
Sbjct: 121 EIHSYKQLPITFYQIQKKFRDEIRPRFGVIRTIEFLMKDAYSFHINKDSLKKTYENMKNI 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF +L L    ++A S  +GG +S EF  +++ GE ++   K   ++       +  
Sbjct: 181 YIKIFKKLKLNFKIVKAHSKIMGGSISDEFHAISEMGENKIIFLKK-SNYAFNYNEFNEK 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                N ++++                     E K +    IE+GHIF    KYS   + 
Sbjct: 240 KKKFKNYLLQK---------------------EKKLIKKNSIEIGHIFQIEKKYSKNTNF 278

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
             +    K   + MG YGIG  R+++++IE +HD  GIIWP+ +APF++ ++ I  +   
Sbjct: 279 YIQDKKNKKKLLNMGCYGIGINRIISSIIEQNHDKYGIIWPNCIAPFQVFILPINMYKNK 338

Query: 361 CRDACEKIYARLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 K   +       DV +D+  E +G  FA  +L+G P  +++    ++  KVE+ 
Sbjct: 339 KIKKIAKKLYKKLINKNIDVLFDNRNESLGKMFADMNLIGIPFGILISKNTITSKKVELY 398

Query: 420 HRLTGIREDM 429
            R    ++ +
Sbjct: 399 SRKKNSKKKV 408


>gi|332300493|ref|YP_004442414.1| threonyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
 gi|332177556|gb|AEE13246.1| threonyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
          Length = 650

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 154/443 (34%), Gaps = 37/443 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L      +  +G+  WLP G +    +   ++  Q R G
Sbjct: 234 YLALLEEAKKRDHRKIGKELELFA-FSQRVGQGLPLWLPRGTQLRLKLEDFLKRIQKRYG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             ++  P + + +L+  SG Y  YG +  +     +  +A +  P +     +I+R    
Sbjct: 293 YQQVMTPHIGNVELYKTSGHYAKYGADSFQVITTPQEGEAFMLKPMNCPHHCEIYRLKPH 352

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +    +R E      G+ R R F   DA+ F   P+  K  + K+     
Sbjct: 353 SYRDLPVRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCR-PDQVKEEFLKVMDIIF 411

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            IF  L  ++   +                 + T  ++   S++  D    +      + 
Sbjct: 412 IIFRALDFENFEAQISLR-------------SQTDRSKYIGSEENWDRAEQAIIEACQEA 458

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    D     + D+L    ++    ++                  +
Sbjct: 459 GLPAHVEYDEAAFYGPKLDFM---VKDALGRRWQLGTIQVDYNLP--------ERFDLEY 507

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D + H    +     G+M    AV+     GK  +W           + I    +  
Sbjct: 508 TGEDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LAPDQVVILPVSERF 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   ++   LS+    V  DD  E++G +    +L   P  +IVG +  +D  V ++ +
Sbjct: 562 NEYANEVAVALSEHDISVSIDDRNEKVGRKIRDNELKRIPYMLIVGEQEQADGTVSVRKQ 621

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
             G      +            +
Sbjct: 622 GEGDVGTEKISTFAERILQEIES 644


>gi|163750377|ref|ZP_02157617.1| prolyl-tRNA synthetase [Shewanella benthica KT99]
 gi|161329867|gb|EDQ00853.1| prolyl-tRNA synthetase [Shewanella benthica KT99]
          Length = 569

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 143/389 (36%), Positives = 200/389 (51%), Gaps = 20/389 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P DAE+ SH+LMLR GM+ +++ G+YSWLP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPADAEVVSHQLMLRAGMVRRNASGLYSWLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW+E+GR++ +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWIETGRWEKFGPELLRFKDRHNRDFVLGPTHEEVITDIIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E    +Y+ MF +
Sbjct: 121 EINSYKQLPLTLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDQESMDVTYDTMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL   P+ A++G IGG +SHEF VLAD+GE  +       D+    E  +  
Sbjct: 181 YNNIFERMGLSFRPVLADTGSIGGSMSHEFHVLADSGEDLIAY-STESDYAANIEKAEAP 239

Query: 241 -----------DIISLNSIVEQWTAPYAATSDVHNEKLFDSL---PENKRVSARGIEVGH 286
                      ++  +++   +  A      D+  EK   +L      + V    I V  
Sbjct: 240 MPTEPRGAATQEMTLIDTPNAKTIAELVEQHDIAIEKTVKTLIVKGATEEVPLVAIVVRG 299

Query: 287 IFYFGTKYSLPMSA-----TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
                   +  + A      F         +  G   IG + +   V           + 
Sbjct: 300 DHELNEVKAEKIEAVLAPFEFADEADIRKAIGAGPGSIGPVGLNIPVYIDHSVNVMSDFG 359

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYA 370
                       I     + +     +  
Sbjct: 360 AGANQDDKHYFGINWERDLPQAEAFDLRN 388



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/203 (34%), Positives = 107/203 (52%), Gaps = 3/203 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHN--EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A   D+ N  E       +      RGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPQAEAFDLRNIIEGEPSPCGQGTIALLRGIEVGHIFQLGTNYSESM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
            A     +GK   + MG YG+G  R+VAA IE +HD +GIIWP ++APFK+ ++ +    
Sbjct: 425 HANVLDKNGKSKTLLMGCYGVGVSRIVAAAIEQNHDDRGIIWPAAIAPFKVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +D  EK+Y  L+  G +V +DD  E+ G  FA  +L+G P  V++G + + +   E
Sbjct: 485 SHRVKDMAEKLYQDLNDAGIEVLFDDRKERPGVMFADMELVGLPHVVVIGDRNIDNGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASH 440
            K+R TG + D+  ++++++   
Sbjct: 545 YKNRRTGEKRDIPFDQLLDFLKS 567


>gi|206561773|ref|YP_002232538.1| prolyl-tRNA synthetase [Burkholderia cenocepacia J2315]
 gi|226699125|sp|B4E5W6|SYP_BURCJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|198037815|emb|CAR53759.1| prolyl-tRNA synthetase [Burkholderia cenocepacia J2315]
          Length = 578

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 137/288 (47%), Positives = 183/288 (63%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +       +F    E  +  
Sbjct: 181 YVRIFSRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYCPT-SEFAANVEAAEAL 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
               +  +    +E+   P  A  +   E L   L    +      + 
Sbjct: 240 PLIAERAAPAEAMEKVATPGKAKCEAVAELLSIPLERTIKSIVLATDN 287



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 104/192 (54%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPDVADVRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YG+G  R++ A IE + D +GIIWP+S+APF++ L  +      + R+  +K+YA 
Sbjct: 442 LMGCYGVGITRILGAAIEQNFDDRGIIWPESIAPFEVVLCPMGYDRSDLVRETADKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R       +  
Sbjct: 502 LVAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKIEYQGRRDAEATLLPA 561

Query: 432 EEVINYASHRFS 443
           +      + +  
Sbjct: 562 DTAAATVAEKIR 573


>gi|148887021|sp|Q0VRL1|SYP_ALCBS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 572

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 135/388 (34%), Positives = 195/388 (50%), Gaps = 19/388 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  ++E P DA + SH+LMLR GM+ + + G+Y+WLP G + L  V  +IREE
Sbjct: 1   MRTSQYLLATVKETPADAVVTSHQLMLRAGMVRKLASGLYTWLPSGLRVLRKVEQVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q  +LW ESGR  +YG E+LR+ DR++     GPTHEEV+TD+ R+
Sbjct: 61  MDRAGAQEVLMPVVQPMELWEESGRAPAYGPELLRITDRHNNPFCLGPTHEEVITDMVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKDAYSF    +    +Y  M  +
Sbjct: 121 ELHSYKQLPANFYQIQTKFRDEIRPRFGIMRSREFIMKDAYSFHTNMDSLADTYQIMHRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----N 236
           Y  IF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E     
Sbjct: 181 YCAIFDRLGLDYRPVEADTGAIGGAASHEFHVLAESGEDDIAFSD-GSDYAANVELAEAL 239

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN-KRVSARGIEVGHI-------- 287
               +  +  + +E+   P A T +    +    + +  K +  +G E G +        
Sbjct: 240 APTSERPAPGAAIEKVDTPNAKTIEELVTQFNLPIEKTIKTLVVKGAEEGQLVALLVRGD 299

Query: 288 FYFGTKYSLPMSA-----TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
                  +  + A      F   +     V  G   +G + +   VI          +  
Sbjct: 300 HELNDIKAEKLDAVATPLEFASEEEIRKAVGAGPGSLGPVDLPFTVIADRSVAVMSDFGA 359

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYA 370
                     NI     V       +  
Sbjct: 360 GANEDGKHYFNINWERDVALPQIADLRN 387



 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 116/207 (56%), Gaps = 4/207 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
           +D     +I  +        +D+ N    D  P+        RGIEVGHIF  GTKYS  
Sbjct: 363 EDGKHYFNINWERDVALPQIADLRNVVDGDPSPDGSGTLTIKRGIEVGHIFQLGTKYSEA 422

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-A 356
           + AT    +GK   + MG YGIG  RVVAA IE ++D +GIIWP+++APF+++L+ +   
Sbjct: 423 LGATVLDENGKSVVMPMGCYGIGVTRVVAAAIEQNNDDRGIIWPEAIAPFQVALVPVNIK 482

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                R+  EK+YA L+ +G +V +DD   E++G + A  +LLG P ++++  + + +  
Sbjct: 483 KSPRERELAEKLYAELTAMGIEVLFDDREKERLGVKLADTELLGIPHRIVIAERGMDNGV 542

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           +E K R    + +++++E++ +   + 
Sbjct: 543 LEYKGRRDADKTEVAMDEIVAFLKEKM 569


>gi|167586051|ref|ZP_02378439.1| prolyl-tRNA synthetase [Burkholderia ubonensis Bu]
          Length = 578

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 132/235 (56%), Positives = 171/235 (72%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNEFVIGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   +G   SY KM+ +
Sbjct: 121 QIRSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDADGLAESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y+RIF RLGL+  P+ A+SG IGG+ SHEF V+ADTGE  +       DF    E
Sbjct: 181 YVRIFTRLGLEFRPVAADSGSIGGNFSHEFHVIADTGEDAIAYC-PSSDFAANIE 234



 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 69/192 (35%), Positives = 104/192 (54%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N +  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPEVADIRNVQKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMGATFIDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YG+G  R++ A IE + D +GIIWP+S+APF++ L  +        R+A +K+YA 
Sbjct: 442 LMGCYGVGITRILGAAIEQNFDDRGIIWPESIAPFEVVLCPMGYDRSDAVREATDKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R       +  
Sbjct: 502 LAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKLEYQGRRDAEATLLPA 561

Query: 432 EEVINYASHRFS 443
           +        +  
Sbjct: 562 DTAAATVVEKVR 573


>gi|167580503|ref|ZP_02373377.1| prolyl-tRNA synthetase [Burkholderia thailandensis TXDOH]
          Length = 578

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 131/235 (55%), Positives = 169/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  +       DF    E
Sbjct: 181 YVRIFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPT-SDFAANVE 234



 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/192 (37%), Positives = 105/192 (54%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPVIADIRNVKAGDPSPDGKGVLDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D KGIIWP+++APF++ L  +        R+A +K+YA 
Sbjct: 442 VMGCYGIGVTRILGAAIEQNFDDKGIIWPEAIAPFEVVLCPMGYDRSDAVREAADKLYAD 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       +  
Sbjct: 502 LAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGRRDAEATLLPA 561

Query: 432 EEVINYASHRFS 443
           +      + +  
Sbjct: 562 DSAATAVAEKVR 573


>gi|332307477|ref|YP_004435328.1| prolyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174806|gb|AEE24060.1| prolyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 571

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 116/237 (48%), Positives = 165/237 (69%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR G++ + + G+Y+WLP G + L+ V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGLVRKLASGLYTWLPTGLRVLNKVAQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G++E+ +P +Q ADLW ESGR+D YG E+LR+ DR+ +  + GPTHEEV+T + ++
Sbjct: 61  MDRAGSLEILMPVVQPADLWQESGRWDEYGPELLRVKDRHFRDFVLGPTHEEVVTALVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REF MKDAYSF L+ E    +Y++MF +
Sbjct: 121 EVSSYKQLPLNVYQIQTKFRDEVRPRFGVMRGREFTMKDAYSFHLSDECLNKTYDEMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y R+F R+ L+  P+ A++G IGG+ SHEF VLA++GE  +    +  D+    E  
Sbjct: 181 YCRVFERINLEFRPVIADNGSIGGNASHEFHVLAESGEDDIAF-SNASDYAANIEKA 236



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/194 (34%), Positives = 111/194 (57%), Gaps = 3/194 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A     +D+ N +  D  P+ K      RGIEVGHIF  G+KYS  ++      +GK
Sbjct: 378 ERDAKEYQQADIRNVQAGDPSPDGKGTLEIKRGIEVGHIFQLGSKYSEALNCGVLDENGK 437

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              + MG YGIG  R+VAA IE +HD  GIIWPD++APFK++++ +        +   E+
Sbjct: 438 HQVLNMGCYGIGVSRIVAAAIEQNHDKYGIIWPDAIAPFKVAIVPMNMHKSHRIQQVAEQ 497

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA+L   G +V +DD  E+ G  F   +L+G P  +++G + + + KVE K+R +G ++
Sbjct: 498 MYAQLKAAGIEVLFDDRKERPGVMFNDMELVGVPHTIVIGERNLDEQKVEYKNRRSGEKQ 557

Query: 428 DMSLEEVINYASHR 441
            + + ++ ++ +  
Sbjct: 558 LIDIPQIADFIATL 571


>gi|305664643|ref|YP_003860930.1| threonyl-tRNA synthetase [Maribacter sp. HTCC2170]
 gi|88707344|gb|EAQ99590.1| threonyl-tRNA synthetase [Maribacter sp. HTCC2170]
          Length = 646

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 159/444 (35%), Gaps = 39/444 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T    +  +G+  WLP G    + +   +++ Q + G
Sbjct: 231 YLQLLEEAKKRDHRKLGKELELFT-FSQKVGQGLPLWLPKGAALRERLEQFLKKAQKKAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +  P +   +L+V SG Y  YG++  +     ++D+  +  P +     +I+ S   
Sbjct: 290 YEMVVTPHIGQKELYVTSGHYAKYGEDSFQPIHTPKDDEEFLLKPMNCPHHCEIYNSRPF 349

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + +    +R E      G+ R R F   DA+ F  TP+     +  +    L
Sbjct: 350 SYRELPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPDQLDQEFKDVIDLSL 408

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +   LG ++   +                  D    + +           +   +    
Sbjct: 409 YVLSSLGFENFKAQVSVR--------------DLDTPEKYIGSVENWEKAENAIINAAKE 454

Query: 243 ISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             L+ +VE    A Y    D     + D+L  N ++    ++                 T
Sbjct: 455 KGLDFVVESGEAAFYGPKLDFM---VKDALGRNWQLGTIQVDYNLP--------ERFDLT 503

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +KG+D + H    +     G+M    A++     G   +W             I    + 
Sbjct: 504 YKGSDNESHRPVMIHRAPFGSMERFVALLLEHTGGNFPLW------LIPEQAIILPVSEK 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                EK+   L         D+  E +G +   A++   P  +IVG     ++ + ++ 
Sbjct: 558 HEKYAEKVLNSLENNEIRALIDNRNETVGKKIREAEMGKLPFMLIVGESEEENNTIAVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
                   ++++  ++  +   ++
Sbjct: 618 HGGEDIGSINVQAFVDLVTKEINS 641


>gi|323701857|ref|ZP_08113527.1| prolyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323533161|gb|EGB23030.1| prolyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 568

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 112/244 (45%), Positives = 159/244 (65%), Gaps = 1/244 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AE+ SH+L+LR G I + + GIY++LPL Q+ L  +  I+REE
Sbjct: 1   MRTSQMLMPTLREVPAEAEVVSHQLLLRAGFIRKSASGIYTYLPLAQRVLKKIKEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+ +P +Q A++W+ESGR+  YG E+ RL DR+++    GPTHEEV+T + R 
Sbjct: 61  MDKQGGQELLMPIVQPAEMWLESGRWHVYGPELFRLKDRHNRDFCLGPTHEEVITILVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ +P   YQIQ KFRDE RPRFG+MR REF+MKD YSFD    G   SY KM+ +
Sbjct: 121 EVRSYKQMPLLLYQIQNKFRDERRPRFGLMRGREFIMKDLYSFDRDEAGLDISYQKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F+R GLK  P+ A+SG IGG  +HEF+VLAD+GE  +       D+    E     
Sbjct: 181 YTNVFNRCGLKFRPVEADSGAIGGSDTHEFMVLADSGEAAILFCSQC-DYAANIEKAAVP 239

Query: 241 DIIS 244
              +
Sbjct: 240 AAGA 243



 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 69/188 (36%), Positives = 110/188 (58%), Gaps = 2/188 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+   +  +  P+   +   ARGIEVG IF  GTKYS  + ATF   +GK+  + MG 
Sbjct: 380 VEDIRMVQAGEPCPKCGAELQQARGIEVGQIFKLGTKYSKALGATFLDENGKEKPIVMGC 439

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +AA IE +HD  GIIWP S+AP+   +I + A D+      E +Y +L+++G
Sbjct: 440 YGIGVSRTMAAAIEQNHDQDGIIWPASIAPYHAIVIPVSAKDEKQMQLAESLYNKLNQIG 499

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +   DD  E+ G +F  ADL+G+PL+++VG+K ++D  VE++ R +G  + + L+++  
Sbjct: 500 VETVLDDRAERPGVKFKDADLIGYPLRIVVGNKAMTDGLVEVRQRKSGQTDLIPLDQIPE 559

Query: 437 YASHRFSN 444
                 + 
Sbjct: 560 KVKEILAT 567


>gi|254284280|ref|ZP_04959248.1| prolyl-tRNA synthetase [gamma proteobacterium NOR51-B]
 gi|219680483|gb|EED36832.1| prolyl-tRNA synthetase [gamma proteobacterium NOR51-B]
          Length = 564

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DAEI SH+LMLR GMI + + GIY+W+PLG + L  V A++REE
Sbjct: 5   MRASQFPLFTLKETPSDAEIISHQLMLRAGMIRRIAAGIYTWMPLGLRVLRRVEAVVREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+++P +Q A+LW ESGR++ YG E+ RL DR+D+    GPTHEEV++ + RS
Sbjct: 65  MNNAGALEITMPVVQPAELWQESGRWEQYGPELARLRDRHDREFCLGPTHEEVVSALARS 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y +M  +
Sbjct: 125 EIKSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHVDQASQEETYWRMHDA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF+RL L   P+ A++G IGG+ SHEF VLAD+GE  +  S       
Sbjct: 185 YSRIFNRLSLAFRPVEADTGSIGGNHSHEFHVLADSGEDAIAFSDTSSYAA 235



 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/148 (41%), Positives = 81/148 (54%), Gaps = 3/148 (2%)

Query: 258 ATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T+D+      D     E      RGIEVGHIF  GTKYS  M A     +GK   + MG
Sbjct: 385 ETADLREVVAGDPSPCGEGSLEICRGIEVGHIFQLGTKYSEAMGAEVLDENGKSTAMAMG 444

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSK 374
            YGIG  R+VAA IE ++D  GIIWP S+APF ++L+ +     Q   DA E +Y+   +
Sbjct: 445 CYGIGITRIVAAAIEQNNDDNGIIWPVSMAPFTVALVPLNMGKSQAVADATEDLYSACVE 504

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            G DVF DD  ++ G +FA  +L+  P 
Sbjct: 505 AGIDVFMDDRDQRPGVKFAEMELIASPF 532


>gi|268590504|ref|ZP_06124725.1| hypothetical protein PROVRETT_06701 [Providencia rettgeri DSM 1131]
 gi|291314090|gb|EFE54543.1| proline--tRNA ligase [Providencia rettgeri DSM 1131]
          Length = 572

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 122/235 (51%), Positives = 159/235 (67%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y WLP G + L  V  I+REE
Sbjct: 1   MRTSKYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYDWLPTGVRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MENAGAIEVSLPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EITSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+G     ++A++G IGG  SHEF VLA  GE  V       D+    E
Sbjct: 181 YSKIFTRIGFDFRAVQADTGSIGGSASHEFQVLAKNGEDDVIF-STESDYAANIE 234



 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 76/187 (40%), Positives = 113/187 (60%), Gaps = 3/187 (1%)

Query: 261 DVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M A+ +  DG +  V MG YG
Sbjct: 386 DLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAMKASVQNEDGHNQIVTMGCYG 445

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGC 377
           IG  R+VAA IE SHD +GIIWPD++APF+++++ +  H     ++  EK+YA L   G 
Sbjct: 446 IGVTRIVAAAIEQSHDDRGIIWPDAIAPFQVAILPMNMHKSYRVKEVAEKLYADLKANGI 505

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV +DD  E+ G  FA  +L+G P  +++G + + ++++E K R +  +E + LE VI++
Sbjct: 506 DVIFDDRKERPGVMFADMELIGVPYTIVIGDRNLDNNQIEYKSRRSDDKELVGLENVISF 565

Query: 438 ASHRFSN 444
              +   
Sbjct: 566 LKGKLGK 572


>gi|225851210|ref|YP_002731444.1| threonyl-tRNA synthetase [Persephonella marina EX-H1]
 gi|225645886|gb|ACO04072.1| threonyl-tRNA synthetase [Persephonella marina EX-H1]
          Length = 646

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 149/446 (33%), Gaps = 40/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
             KY   + +   RD      +L L   +I +    G+  WLP G    + +    +EE 
Sbjct: 234 LKKYMNMLEEAKKRDHRKLGRELELF--IIDEDVGGGLALWLPKGAVIRNEIETAWKEEH 291

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G   +  P +    LW  SG  D Y + M       ++     P +     +I++S 
Sbjct: 292 IKRGYQLVYTPHVGKEQLWQTSGHVDFYRENMFPEMMIEEEGYFVKPMNCPFHVEIYKSR 351

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SY+ LP    ++   +R E      G+MR R F   DA+         +    K    
Sbjct: 352 QRSYKELPIKLAELGTVYRYERSGVLHGLMRVRGFTQDDAHIICR-----EDQVEKEIQD 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L +                       +EF +   T   +        +    S     +
Sbjct: 407 VLHLVLDTLRTY-------------GFNEFQIFLSTRPEKSVGDDRMWEVATESLRKAIE 453

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     I E   A Y    DV   K+ D++    + S    +    F    ++ +    
Sbjct: 454 SVGLDYQIDEGGGAFYGPKIDV---KIKDAIGRMWQCSTIQFD----FNLPERFDMY--- 503

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G D K H    +     G++     V+   + G   +W   V    I +        
Sbjct: 504 -YIGEDNKRHRPYMIHRAIFGSIERFIGVLIEHYAGLLPLWLSPVQAKIIPVA------D 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +++  +L + G  V  D+  E++  +   A+L   P  +IVG K      V ++
Sbjct: 557 THIPYAKEVEKKLKEAGLRVEVDERSERMNRKIRDAELQKIPYMLIVGDKEQQTGSVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            +  G     ++++ I  A       
Sbjct: 617 TKKKGNVGLFTVDQFIQNAKKLIEER 642


>gi|221134666|ref|ZP_03560969.1| threonyl-tRNA synthetase [Glaciecola sp. HTCC2999]
          Length = 637

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 152/447 (34%), Gaps = 42/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L      + + G+  W   G      + + IR++
Sbjct: 227 KQLKAYLNRLEEAEKRDHRKIGKTLDLF--HWQEEAPGMVFWHNDGWSIYTELESFIRKK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P +    LW +SG +  Y   M    +   +     P +      IF  
Sbjct: 285 LTQYDYQEVKGPLMMDRSLWEKSGHWGKYSSNMFT-TESEKREYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +      +    
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQILDE-VSGCIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G + I ++  + P     S +     ++                 ++    
Sbjct: 403 MVYDTYETFGFEKIVVKLSTRPEERVGSDDIWDKTESAL---------------ADALKA 447

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +DI       E   A Y    +     L D L    +     ++       G+       
Sbjct: 448 NDIEFDYQPGEG--AFYGPKIEF---TLHDCLDRAWQCGTVQLDFSMPGRLGS------- 495

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+   DG+    V +    +G++     ++    +     +P  +AP +  ++NI    
Sbjct: 496 -TYVAEDGERKVPVMIHRAILGSLERFIGILT---EEYAGHFPTWLAPTQAVILNITDK- 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               + C K+          V  D   E+IG +     L   P  ++VG K +   +V +
Sbjct: 551 --QSEYCTKLQKTARNA-IRVKPDLRNEKIGFKIREHTLKRVPYMLVVGDKEMEAGEVAV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       MS+E+ +       ++ 
Sbjct: 608 RTRKGDDLGKMSIEDFLIKVRTDIADK 634


>gi|254304252|ref|ZP_04971610.1| threonine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324444|gb|EDK89694.1| threonine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 637

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 164/443 (37%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  K+   + +   RD      +L L    + ++  G   +LP G    + +  + R+E 
Sbjct: 226 RLKKHLKLMEEAEKRDHRKLGKELELF--FLSEYGPGFPFFLPKGMVIRNVLIDLWRKEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +   +++  P + + +LW  SG + +Y + M   ++ ++      P +       F+  
Sbjct: 284 EKAKYLQLETPIMLNKELWEVSGHWFNYRENMYT-SEIDELEFAIKPMNCPGGVLSFKHQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     +   
Sbjct: 343 LHSYKDLPARLAELGRVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + + +L      +   + P     S E                   D    +     D
Sbjct: 402 IDKFYSKLFGFEYEIELSTKPEKAIGSQE-----------------IWDMAEAALAGALD 444

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     I     A Y    D    K+ D++    +     ++    F    ++      
Sbjct: 445 KLGRKYKINPGDGAFYGPKLDF---KIKDAIGRMWQCGTIQLD----FNLPERFD----V 493

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G DG+ H    +     G++     ++   + G   +W   V    ++L      + 
Sbjct: 494 TYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMWLAPVQVKVLTL------ND 547

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEI 418
            C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V + +V I
Sbjct: 548 ECIPYAKEIMNKLEELGIRAELDDRNETIGYKIREANGRYKIPMQLIIGKNEVENKEVNI 607

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  +   SL+E  NY    
Sbjct: 608 RRFGSKDQFSKSLDEFYNYVVDE 630


>gi|19703946|ref|NP_603508.1| threonyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|22654111|sp|Q8RFS6|SYT_FUSNN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19714122|gb|AAL94807.1| Threonyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 620

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 160/443 (36%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R   +   + +   RD      +L L    + ++  G   +LP G    + +  + R E 
Sbjct: 209 RLKHHLKLMEEAEKRDHRKLGKELELF--FLSEYGPGFPFFLPKGMIVRNVLIDLWRREH 266

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  ++  P + + +LW  SG + +Y + M   ++ ++      P +       F+  
Sbjct: 267 EKAGYQQLETPIMLNKELWEISGHWFNYRENMYT-SEIDELEFAIKPMNCPGGVLAFKHQ 325

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     +   
Sbjct: 326 LHSYKDLPARLAELGRVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNL 384

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + + +L      +   + P     S E                   D    +     D
Sbjct: 385 IDKFYSKLFGFEYEIELSTKPEKAIGSQE-----------------IWDMAEAALAGALD 427

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     I     A Y    D    K+ D++    +     ++    F    ++      
Sbjct: 428 KLGRKYKINPGDGAFYGPKLDF---KIKDAIGRMWQCGTIQLD----FNLPERFD----V 476

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G DG+ H    +     G++     ++   + G   +W   V    ++L      + 
Sbjct: 477 TYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMWLAPVQVKVLTL------ND 530

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEI 418
            C    ++I  +L ++G     DD  E IG +   A+     P+Q+I+G   V + +V I
Sbjct: 531 ECIPYAKEIMNKLEELGIRAELDDRNETIGYKIREANGKYKIPMQLIIGKNEVENKEVNI 590

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  +    L+E   Y    
Sbjct: 591 RRFGSKDQFSKLLDEFYTYVVDE 613


>gi|163790751|ref|ZP_02185177.1| threonyl-tRNA synthetase [Carnobacterium sp. AT7]
 gi|159873931|gb|EDP68009.1| threonyl-tRNA synthetase [Carnobacterium sp. AT7]
          Length = 645

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 161/442 (36%), Gaps = 34/442 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   MI  +   G+  WLP G      +   I + +   
Sbjct: 231 FIQMREEAKLRDHRKLGKELDLF--MISPEVGSGLPFWLPKGATIRRTIERYIVDREISL 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ + 
Sbjct: 289 GYQHVYTPIMADVNLYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDVH 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++    R E       ++    +  +     + P+  +  + +     L 
Sbjct: 349 SYRELPIRIAELGQMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIEEEFKRTLELMLA 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDI 242
           ++    +     R                  D   T+ +   D   +          DD+
Sbjct: 409 VYGDFNITDYRFRLS--------------YRDPNNTEKYYDDDAMWEKAQTMLKAAMDDM 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV    +  ++   + +S   ++    F    ++      T+
Sbjct: 455 GLDYFEAEGEAAFYGPKLDVL---VKTAIGIEETLSTIQLD----FLLPERFD----LTY 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++++  +  +  G +  +   +    +     +P  +AP + ++I +     +  
Sbjct: 504 VGEDGENNHRPVVIHR-GIVSTMERFVAYLIEEYKGAFPTWLAPVQATIIPVNL--DMHT 560

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +I  ++ ++G  V  D+  E++G +   +     P Q++VG   V D+ V ++   
Sbjct: 561 DYAYEIKKQMERIGMRVEVDERNEKMGYKIRASQTQKIPYQLVVGDSEVQDNTVAVRKYG 620

Query: 423 TGIREDMSLEEVINYASHRFSN 444
                 ++L E +   S    N
Sbjct: 621 EKATVTINLSEYLETVSKEIEN 642


>gi|152981235|ref|YP_001354678.1| prolyl-tRNA synthetase [Janthinobacterium sp. Marseille]
 gi|166980130|sp|A6T2D1|SYP_JANMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|151281312|gb|ABR89722.1| prolyl-tRNA synthetase [Janthinobacterium sp. Marseille]
          Length = 577

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 121/235 (51%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V AIIREE
Sbjct: 1   MRASRFFISTLKEAPSDAEIVSHKLMMRAGMIKKIGSGIYTYMPMGLRVIRKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   AIE+ +P +Q A+LW E+GR+D  G E++R+ DR+ +     PT EEV+TD+ R+
Sbjct: 61  MNNAHAIELLMPLVQPAELWQETGRWDKMGAELMRVKDRHGREFAIQPTSEEVVTDVVRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD   +G K SY  MF +
Sbjct: 121 EIKSYRQLPINFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDIDGLKKSYQIMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y++IF+R GL+   + A++G IGG  SHEF V+ADTGE  +    +  D+    E
Sbjct: 181 YVKIFNRFGLQFRAVAADNGAIGGSGSHEFHVIADTGEDALVYCPN-SDYAANME 234



 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/193 (36%), Positives = 108/193 (55%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A   D+ N    D  P+ K      RGIEVGH+F  GT YS  M AT+   +GK   +
Sbjct: 385 PEAQVFDIRNVVEGDPSPDGKGTLAIQRGIEVGHVFQLGTAYSESMKATYLDENGKPQLI 444

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  R++ A IE + D KGIIWP ++APF++ L  +     +  +   +K+Y  
Sbjct: 445 QMGCYGIGVTRILGAAIEQNFDDKGIIWPTALAPFEVVLCPMGYDRSEGVKAETDKLYEA 504

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G+ FA  +L+G P ++++G + + + K+E + R       ++L
Sbjct: 505 LQAAGVDVILDDRGERPGAMFADWELIGVPHRIVIGDRGLKEGKLEYQGRRDAAATPVAL 564

Query: 432 EEVINYASHRFSN 444
           EE++ +   + +N
Sbjct: 565 EEMLGFVQAKLAN 577


>gi|304396668|ref|ZP_07378549.1| prolyl-tRNA synthetase [Pantoea sp. aB]
 gi|304356177|gb|EFM20543.1| prolyl-tRNA synthetase [Pantoea sp. aB]
          Length = 572

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 126/285 (44%), Positives = 175/285 (61%), Gaps = 20/285 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTQKETPSDAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q ADLW ESGR++ YG E+LR+ADR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAVEILMPVVQPADLWQESGRWEEYGPELLRIADRHERPFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +    + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQASLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V       D+    E     
Sbjct: 181 YSQIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIF-STDSDYAANIELAEAV 239

Query: 236 --------------NTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                           +  D  ++  +VEQ+  P   T      K
Sbjct: 240 APAGERAAPSQEMQLVETPDAKTIAELVEQFNVPVEKTVKTLIVK 284



 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 69/193 (35%), Positives = 113/193 (58%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A+ +D+ N    D  P+ K      RGIEVGHIF  GTKYS  + A+ +G DG++  +
Sbjct: 380 PLASVADIRNVVEGDLSPDGKGTLQIKRGIEVGHIFQLGTKYSDALKASVQGEDGRNQVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWP ++APF+++++ +        ++  E++YA 
Sbjct: 440 SMGCYGIGITRVVAAAIEQNHDDRGIIWPAALAPFEVAILPMNMQKSFRVKELAEELYAT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V  DD  E+ G  FA  +L+G P  +++G + + + ++E K R  G ++ +  
Sbjct: 500 LRAKGVEVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNQEIEYKSRRAGEKQMIKQ 559

Query: 432 EEVINYASHRFSN 444
           +E++ +     + 
Sbjct: 560 DEIVEFLLKALNK 572


>gi|147677598|ref|YP_001211813.1| prolyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
 gi|189083504|sp|A5D2U6|SYP_PELTS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146273695|dbj|BAF59444.1| prolyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
          Length = 570

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 118/273 (43%), Positives = 166/273 (60%), Gaps = 4/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F P L+E P +AE+ SH+L+LR G I + + G+Y++LPL  + +  +  I+REE
Sbjct: 1   MRASELFSPTLREVPAEAEVVSHQLLLRAGFIRRAAAGVYTYLPLAMRVIKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q A++W ESGR+D YG E+ RL DR+D+    GPTHEE++T + R 
Sbjct: 61  MDRQGGQELLMPIIQPAEIWQESGRWDVYGPELFRLKDRHDRDFALGPTHEEIITVLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE RPRFG+MR REF+MKD YSFD   EG   SY KM+ +
Sbjct: 121 EVSSYKQLPLLLYQIQNKYRDERRPRFGLMRGREFIMKDLYSFDRDEEGLNVSYMKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDF 239
           Y R+F R GL   P+ A+SG IGG  +HEF+VLA++GE  V +C  +  D+    E    
Sbjct: 181 YTRVFQRCGLHFRPVEADSGAIGGSDTHEFMVLAESGEATVLYCDGNGCDYAANVEKAAL 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                     E+   P AA        + +   
Sbjct: 241 P---FKERRTEEEMRPVAARETPGCRSVEEVCG 270



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 105/225 (46%), Gaps = 2/225 (0%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSA 279
             +       + +      D   L ++           +D+   +  +  P        A
Sbjct: 345 IIADPEAAAAVNAVTGANRDDTHLINVNPGRDFKIDLVADIRMVQAGEPCPRCGAGLKEA 404

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVG IF  G KYS  + A++    G+   V MG YGIG  R +AA IE +HD  GII
Sbjct: 405 KGIEVGQIFKLGDKYSRALGASYLDEKGQSRPVIMGCYGIGITRTMAAAIEQNHDRDGII 464

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP S+APF + +I +   D       E++Y+RL   G +   DD  E+ G +F  ADL+G
Sbjct: 465 WPASIAPFHVVVIPVNVKDGGQYAMAEEVYSRLWAAGIEAVLDDRTERAGVKFKDADLIG 524

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +PL++ +G+K V +  VEI+ R  G    + + E+          
Sbjct: 525 YPLRITIGAKAVEEKLVEIRIRKNGETVFVPMNELEEKVEDMLKE 569


>gi|332701961|ref|ZP_08422049.1| threonyl-tRNA synthetase [Desulfovibrio africanus str. Walvis Bay]
 gi|332552110|gb|EGJ49154.1| threonyl-tRNA synthetase [Desulfovibrio africanus str. Walvis Bay]
          Length = 655

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 144/441 (32%), Gaps = 40/441 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             K+   I +   RD      +L L +    +   G+  W P G      +    R+E  
Sbjct: 227 LKKHLERIEEAKKRDHRKLGTQLDLFS-FCDEAGAGMVIWHPKGALIRTIIEDFERKEHL 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G   +  P L   +LW  SG Y+ Y + M    + +++A    P +      I++S +
Sbjct: 286 RRGYHIVQGPQLLKRELWERSGHYEHYRQNM-YFTEIDEQAYGVKPMNCLSHMLIYKSKV 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP   +++ +  R E      G++R R+F   DA+      +        +    
Sbjct: 345 RSYRDLPLRLFELGVVHRHEKSGVLHGLLRVRQFTQDDAHIICRPDQLEDEIIGVVHFV- 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                               + G     F     T   +   S    +    +     D 
Sbjct: 404 ------------------RDVMGIFGFNFEAEISTRPEKSIGSDADWERATNALMKALDK 445

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+    + D+L    + +    +    F    ++       
Sbjct: 446 AGLKYGINEGDGAFYGPKIDI---VIKDALDRRWQCATIQCD----FTLPERFD----LA 494

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H    +    +G++     V+     G   +W        +++         
Sbjct: 495 YVGQDGERHRPVMVHRVILGSLERFIGVLTEHFAGAFPVWLAPEQVRILNVT------DA 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   K+   L + G     D   E++G +   A L   P  ++VG K V    V ++ 
Sbjct: 549 QAEYTSKVLDALREQGIRAEADLRNEKLGYKVREAQLEKIPYMLVVGDKEVETGVVNVRT 608

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R        +  EV       
Sbjct: 609 RSGENLGVKTPAEVAAMIHDE 629


>gi|319898981|ref|YP_004159074.1| Threonyl-tRNA synthetase [Bartonella clarridgeiae 73]
 gi|319402945|emb|CBI76496.1| Threonyl-tRNA synthetase [Bartonella clarridgeiae 73]
          Length = 658

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 89/445 (20%), Positives = 156/445 (35%), Gaps = 39/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L      +   G+  W P G K   N+ + +R   + 
Sbjct: 233 KVYLHMLEETEKRDHRRLGREMDLF--HFQEEGPGMIFWHPKGWKMFQNLISYMRRRLDD 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIY--GPTHEEVMTDIF 118
               E+  P +    LW  SG +  Y + M +     D  +   IY   P +      IF
Sbjct: 291 HKYAEVQAPQVLDKSLWEVSGHWRWYKENMFKTIPAADDWNNEYIYALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  L  R E      G+MR+R F   DA+ F    + +    +  
Sbjct: 351 KHGLKSYRDLPIRLAEFGLVHRYEPSGSLHGLMRARSFTQDDAHIFCTEEQLADECLSIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G + I ++  + P     S E    A+   T V             + +
Sbjct: 411 -DLILSTYADFGFEEISLKLSTRPEKRVGSDELWDHAENIMTSVL--------KTIEKKS 461

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                IS+   +    A Y    +     L D++    +     ++      FG      
Sbjct: 462 SGRVRISI---LPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 509

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   D +      +     G+M     ++  +  G    W           I +  
Sbjct: 510 --AFYIDKDSEKRQPVMIHRAIFGSMERFLGILIENFSGHMPFW------LAPQQIAVAT 561

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +KI A+L  +G  V  D   E+I  +     L   P+ ++ G +    + V
Sbjct: 562 ITSDANDYAKKITAKLKAIGLSVILDSRNEKINYKIREHSLQKIPVILVCGKREAETNSV 621

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +  +SLEEVI      
Sbjct: 622 NMRRLGSVEQSLLSLEEVIKQLLDE 646


>gi|120598308|ref|YP_962882.1| prolyl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|152016601|sp|A1RI33|SYP_SHESW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120558401|gb|ABM24328.1| prolyl-tRNA synthetase [Shewanella sp. W3-18-1]
          Length = 571

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 121/237 (51%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +       D+    E  
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAY-STGSDYAANIEKA 236



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 111/207 (53%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +    
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  LS  G +V  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLSAAGIEVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K+R TG ++D+  ++++++  +   +
Sbjct: 545 YKNRRTGEKQDIPFDQLVDFLKNAVKS 571


>gi|146293614|ref|YP_001184038.1| prolyl-tRNA synthetase [Shewanella putrefaciens CN-32]
 gi|166980158|sp|A4Y8F6|SYP_SHEPC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145565304|gb|ABP76239.1| prolyl-tRNA synthetase [Shewanella putrefaciens CN-32]
          Length = 571

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 121/237 (51%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNETYEAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +       D+    E  
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAY-STGSDYAANIEKA 236



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 111/207 (53%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +    
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  LS  G +V  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLSAAGIEVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K+R TG ++D+  ++++++  +   +
Sbjct: 545 YKNRRTGEKQDIPFDQLVDFLKNAVKS 571


>gi|37524693|ref|NP_928037.1| prolyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|81834075|sp|Q7N8M7|SYP_PHOLL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|36784118|emb|CAE12987.1| prolyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 572

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 130/293 (44%), Positives = 174/293 (59%), Gaps = 3/293 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+W+P G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVVSHKLMLRAGMIRKLASGLYNWMPTGIRVLKKVEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N TGAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNTGAIEISMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T +QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T    + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLTLFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHATQTSLQETYDNMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC---SKDFMDFPIPSENT 237
           Y +IF R+GL    + A++G IGG  SHEF VLA +GE  +     S    +  +     
Sbjct: 181 YSKIFTRIGLDFRAVLADTGSIGGSASHEFQVLAASGEDDIVFSTESNYAANIELAEAVA 240

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              D       +     P A T     E+    + +  +        G     
Sbjct: 241 PAHDRAVPTEDMHLVDTPNAKTIAELVEQFNLPIEKTVKTLMVHAAEGTSHKL 293



 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 3/191 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ K   +  RGIEVGHIF  GTKYS  M AT +G DG +  V
Sbjct: 380 PVPEVADIRNVVEGDASPDGKGTLLIKRGIEVGHIFQLGTKYSDAMKATVQGEDGHNQIV 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIWPD++APF+++++ +  H     ++  EK+YA 
Sbjct: 440 TMGCYGIGVTRIVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSYRVKEVAEKLYAD 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV +DD  E+ G  FA  +L+G P  V++G + + + +VE KHR    ++ + L
Sbjct: 500 LRASGIDVIFDDRKERPGVMFADMELIGVPHTVVIGDRNLDNGEVEYKHRRNDEKQMLKL 559

Query: 432 EEVINYASHRF 442
           + V++Y   + 
Sbjct: 560 DNVVDYLKQQL 570


>gi|238763953|ref|ZP_04624909.1| Prolyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
 gi|238697770|gb|EEP90531.1| Prolyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
          Length = 572

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L    + A++G IGG  SHEF VLAD+GE  +       D+    E
Sbjct: 181 YSKIFSRMDLNFRAVLADTGSIGGSASHEFQVLADSGEDDIVF-STGSDYAANIE 234



 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 74/192 (38%), Positives = 112/192 (58%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 380 PLPHIADLRNVVEGDISPDGQGTLLIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     ++  E++Y  
Sbjct: 440 TMGCYGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVKELAEELYTT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  V++G + +   +VE K+R  G +  +  
Sbjct: 500 LRAHGIDVILDDRKERPGVMFADMELIGVPHNVVIGDRNLDSEEVEYKNRRAGEKHMIKT 559

Query: 432 EEVINYASHRFS 443
            E+I++   +  
Sbjct: 560 SEIIDFLLSQIK 571


>gi|167648480|ref|YP_001686143.1| threonyl-tRNA synthetase [Caulobacter sp. K31]
 gi|189083602|sp|B0T0Z7|SYT_CAUSK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167350910|gb|ABZ73645.1| threonyl-tRNA synthetase [Caulobacter sp. K31]
          Length = 659

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/435 (17%), Positives = 142/435 (32%), Gaps = 39/435 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD       + L    I +  KG+  W P G      + A +R   +  G  E
Sbjct: 241 RIEEAERRDHRKLGKTMDLF--HIQEEGKGMVFWHPKGWTLYLALEAYMRRRLDAAGYRE 298

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +    LW  SG  + +G  M        + +   P +      IF    KSYR L
Sbjct: 299 VKTPQILDKSLWERSGHAEKFGHAMFMCESAEGEVLAVKPMNCPGHIQIFNVGQKSYREL 358

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +     R E      G+MR R F   DA+ F    + ++ S  +       ++  
Sbjct: 359 PLRMAEFGACHRYEPSGAMHGIMRVRAFTQDDAHIFCREEQVTEES-ARFIELLRSVYSD 417

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           LG+     +  + P                           D    + +   +       
Sbjct: 418 LGMHLADTKFSTRPELR-----------------AGEDAVWDKAEAALSAAAEAAGETLV 460

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           + E   A Y    +     L D++    +     ++    F    +    + A +   DG
Sbjct: 461 LQEGEGAFYGPKLEF---SLKDAIGRVWQCGTLQLD----FVLPER----LDAEYVAEDG 509

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                  +    +G+      ++  ++ G   +W   V     ++           D  +
Sbjct: 510 SKKRPVMLHRAILGSFERFIGILLENYAGHLPLWLAPVQVVVATIT------SDADDYAQ 563

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++  RL+ +G     D   E+I  +     L   P+  +VG K   + +V ++      +
Sbjct: 564 RVAERLTSMGIRAEVDFRNEKINYKIREHSLAKVPVIAVVGRKEAENGEVALRRLGGEGQ 623

Query: 427 EDMSLEEVINYASHR 441
           + +SLE+ +   +  
Sbjct: 624 KVLSLEDAVRALTEE 638


>gi|315222497|ref|ZP_07864386.1| threonyl-tRNA synthetase [Streptococcus anginosus F0211]
 gi|315188183|gb|EFU21909.1| threonyl-tRNA synthetase [Streptococcus anginosus F0211]
          Length = 650

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 164/441 (37%), Gaps = 33/441 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      V   I + + 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISPEVGQGLPFWLPDGATIRRIVERYITDREV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSH 121
             G   +  P L S DL+  SG ++ Y ++M    D  D    +  P +     +++++H
Sbjct: 287 NDGYQHVYTPPLASVDLYKTSGHWEHYQEDMFPPMDMGDGEQFVLRPMNCPHHIEVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    ++ +  R E       ++    +  +     + PE  +  +  +    
Sbjct: 347 VHSYRELPIRIAELGMMHRFEKSGALSGLQRVREMTLNDSHLFVMPEQIQEEFKHVLDLM 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                     + + F + +  +          DD
Sbjct: 407 IDVYKDFNITDYRFRLS-------------YRDPNDKHKYFDNDEMWENAQRMLKGAMDD 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    DV   ++  +L   + +S   ++    F    ++ L     
Sbjct: 454 LGLDYFEAEGEAAFYGPKLDV---QVKTALGNEETLSTIQLD----FLLPERFDLH---- 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M     G +  +   I    +     +P  +AP ++++I I   ++  
Sbjct: 503 YIGADGEEHRPVMIHR--GIVSTMERFIAYLIETYKGAFPTWLAPHQVTVIPI--SNEAH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   K+   L   G  V  D+  E++  +   +     P Q+IVG K  +D  V ++  
Sbjct: 559 ADYAWKVAKELRNRGVRVDVDERNEKMQYKIRQSQTHKVPYQLIVGDKEQADGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRF 442
            +      ++ E +N+     
Sbjct: 619 GSKQTHTETVAEFVNHILADI 639


>gi|282855610|ref|ZP_06264924.1| threonine--tRNA ligase [Pyramidobacter piscolens W5455]
 gi|282586540|gb|EFB91794.1| threonine--tRNA ligase [Pyramidobacter piscolens W5455]
          Length = 640

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 145/444 (32%), Gaps = 40/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +  +H    G   + P G   ++ + +  R      G
Sbjct: 227 YITRMEEARRRDHRKLGKELDLFS--LHNEGVGFPFFHPKGMVVMNKLMSFWRRLHFLNG 284

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E   P + + DLW+ SG +D Y + M      +D      P +      I+++   SY
Sbjct: 285 YTEARTPQILNRDLWLRSGHWDHYRENM-YFTTIDDIPHAIKPMNCPGGIIIYKTSKHSY 343

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++ +  R EL     G+MR R F   DA+ F    +                
Sbjct: 344 RELPIRMGELGVVHRHELSGALHGLMRVRCFTQDDAHHFCTPEQIKDE------------ 391

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                   + M+            ++ V   T       S +  +    + +    +  +
Sbjct: 392 ------VKLIMKLNDYVYTHVFGFKYHVELSTRPENSMGSDELWEIAENALSETLAETGT 445

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    D H E              R  + G I             T+ G
Sbjct: 446 PYVLNPGDGAFYGPKIDFHLED----------CIGRTWQCGTI-QLDFTMPEKFDMTYVG 494

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG++H    +    +G++     ++  ++ G    W   V    +++            
Sbjct: 495 ADGREHRPVMLHRTILGSIERFMGILIENYAGAFPYWLAPVQVKLLAV------SDDHLP 548

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L  +   V  D   E++G +   A +   P  +++G K V    V ++ R  
Sbjct: 549 YAREVAEKLQNLNVRVEIDRRDEKLGRKIRDAQMEKVPYMLVIGDKEVEARTVAVRDRAK 608

Query: 424 GIREDMSLEEVINYASHRFSNNRP 447
           G    M         + ++   + 
Sbjct: 609 GDLGSMDFAAFTGLLAEQYDPEKE 632


>gi|17547535|ref|NP_520937.1| prolyl-tRNA synthetase [Ralstonia solanacearum GMI1000]
 gi|81849506|sp|Q8XVL4|SYP_RALSO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|17429839|emb|CAD16523.1| probable prolyl-trna synthetase protein [Ralstonia solanacearum
           GMI1000]
          Length = 574

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 119/235 (50%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   G+Y+++P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGLYTYMPVGLRVIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GA+E+ +P +Q A+LW E+GR+D  G EM+R+ DR+++ ++  PT EEV+TDI R+
Sbjct: 61  MNASGAVEVLMPVVQPAELWQETGRWDKMGDEMMRVKDRHERDLVIQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KM+ +
Sbjct: 121 EIRSYKQMPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDAEGLKVSYEKMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL+   + A++G IGG  SHEF V+ADTGE  +       D+    E
Sbjct: 181 YTRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIADTGEDAIVY-SPDSDYAANIE 234



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 69/172 (40%), Positives = 102/172 (59%), Gaps = 3/172 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A   D+ N    D  P+ K      RGIEVGH+F  GT+YS  MSATF   +GK   +
Sbjct: 382 PEAEVYDLRNVVEGDPSPDGKGTLAICRGIEVGHVFMLGTRYSESMSATFLDENGKTQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +     +  R   ++++A 
Sbjct: 442 MMGCYGIGITRILGAAIEQNYDARGIIWPVSIAPFEVVICPVGYDRSEAVRAEADRLHAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           L+  G DV  DD GE+ G+ FA  +L+G P +V+VG + + D K+E++ R  
Sbjct: 502 LAAAGIDVILDDRGERPGAMFADWELIGVPFRVVVGERGLKDGKLELQGRRD 553


>gi|94265181|ref|ZP_01288943.1| Prolyl-tRNA synthetase [delta proteobacterium MLMS-1]
 gi|93454322|gb|EAT04629.1| Prolyl-tRNA synthetase [delta proteobacterium MLMS-1]
          Length = 572

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 124/250 (49%), Positives = 161/250 (64%), Gaps = 1/250 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  LP L+E+P +AE+ SHKLMLR GMI + + G+YS+LPLG  A+  V  I+R+E
Sbjct: 1   MRFSQLLLPTLKEDPAEAEVISHKLMLRAGMIRKLTSGVYSYLPLGLAAIRKVEEIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q ADLW ESGR++ YG E+LR  DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQELLLPMVQPADLWRESGRWEKYGPELLRFQDRHQRESCLGPTHEEVITDLVRL 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SYR+LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSFD     +  +Y KM  +
Sbjct: 121 NVHSYRDLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFDADEAAADETYRKMQAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL    + A++G IGG  SHEF+VLA TGE  V   +   D+    E     
Sbjct: 181 YQRIFARCGLAFRAVEADTGSIGGSFSHEFMVLAATGEDLVVTCQHC-DYAANLEKATAR 239

Query: 241 DIISLNSIVE 250
              S      
Sbjct: 240 QQQSPEHDDP 249



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 106/193 (54%), Gaps = 2/193 (1%)

Query: 257 AATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A + D+      D+ P    +    RGIEVGHIF  G +YS  ++ATF   +G+  +  M
Sbjct: 377 AYSGDIRMVTEDDNCPRCDGRLAMTRGIEVGHIFKLGNEYSRALNATFLDKEGQSRHFIM 436

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G +GIG  R VAA IE +HD  GII+P  +APF++ L+N+   D       +++Y  L+ 
Sbjct: 437 GCFGIGVSRTVAAAIEQNHDRDGIIFPLPIAPFQVILLNLTPKDPEISAEAQRLYQELTA 496

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G++F  ADL+G P++++VG +F  +  +EI++R  G   + +    
Sbjct: 497 AGLEVLLDDRNERPGAKFKDADLIGIPIRLMVGKRFAQEGLLEIRNRADGRSSEATPAAA 556

Query: 435 INYASHRFSNNRP 447
           +   +   +   P
Sbjct: 557 VAVITEMVAQQLP 569


>gi|94267977|ref|ZP_01291052.1| Prolyl-tRNA synthetase [delta proteobacterium MLMS-1]
 gi|93451782|gb|EAT02540.1| Prolyl-tRNA synthetase [delta proteobacterium MLMS-1]
          Length = 572

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 124/250 (49%), Positives = 161/250 (64%), Gaps = 1/250 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  LP L+E+P +AE+ SHKLMLR GMI + + G+YS+LPLG  A+  V  I+R+E
Sbjct: 1   MRFSQLLLPTLKEDPAEAEVISHKLMLRAGMIRKLTSGVYSYLPLGLAAIRKVEEIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q ADLW ESGR++ YG E+LR  DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQELLLPMVQPADLWRESGRWEKYGPELLRFQDRHQRESCLGPTHEEVITDLVRL 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SYR+LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSFD     +  +Y KM  +
Sbjct: 121 NVHSYRDLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFDADEAAADETYRKMQAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL    + A++G IGG  SHEF+VLA TGE  V   +   D+    E     
Sbjct: 181 YQRIFARCGLAFRAVEADTGSIGGSFSHEFMVLAATGEDLVVTCQHC-DYAANLEKATAR 239

Query: 241 DIISLNSIVE 250
              S      
Sbjct: 240 QQQSPEHDDP 249



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 106/193 (54%), Gaps = 2/193 (1%)

Query: 257 AATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A + D+      D+ P    +    RGIEVGHIF  G +YS  ++ATF   +G+  +  M
Sbjct: 377 AYSGDIRMVTEDDNCPRCDGRLAMTRGIEVGHIFKLGNEYSRALNATFLDKEGQSRHFIM 436

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G +GIG  R VAA IE +HD  GII+P  +APF++ L+N+   D       +++Y  L+ 
Sbjct: 437 GCFGIGVSRTVAAAIEQNHDRDGIIFPLPIAPFQVILLNLTPKDPEISAEAQRLYRELTA 496

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G++F  ADL+G P++++VG +F  +  +EI++R  G   + +    
Sbjct: 497 AGLEVLLDDRNERPGAKFKDADLIGIPIRLMVGKRFAQEGLLEIRNRADGRSSEATPAAA 556

Query: 435 INYASHRFSNNRP 447
           +   +   +   P
Sbjct: 557 VAVITEMVAQQLP 569


>gi|269123175|ref|YP_003305752.1| threonyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
 gi|268314501|gb|ACZ00875.1| threonyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
          Length = 633

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 160/442 (36%), Gaps = 44/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    I +H  G   ++P G +  + +  + R E N+ G
Sbjct: 229 YIKQVEEAEKRDHRKLGKQLNLF--FIDEHGPGFPFFMPKGMRLFNRLQQLWRIEHNKQG 286

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +   +LW  SG + +Y + M  +++ ++K     P +       +++++ SY
Sbjct: 287 YDEIRTPIMLDKELWEISGHWFNYRENM-YVSEIDEKVYAIKPMNCPGSIIAYKNNLHSY 345

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP  + ++    R E      G+MR R F   DA+ F  TP+  K S  ++   Y + 
Sbjct: 346 KDLPLKYAEMGHVHRHEFSGALHGLMRVRAFTQDDAHVFC-TPDQIKDSIKEIVNLYDKY 404

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G                   +F V   T   +        +    +      ++  
Sbjct: 405 YKLFG------------------FDFHVELSTKPEKAVGDAKVWEISERALEETLKELNI 446

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D    K+ DS+    +     +++              + ++ G
Sbjct: 447 DYRINAGDGAFYGPKIDF---KMKDSIGRIWQTGTIQLDMNLP--------KRFNMSYIG 495

Query: 305 ADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            DG+ H   M    +     R +  +IE       +    +                   
Sbjct: 496 KDGEKHETVMIHRAMFGSLERFIGILIEHYAGAFPVWLAPTQVKIMTI-------SAEQV 548

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   K++ +L  +G     D   E+IG +   A+     P+Q+++G   V ++ V ++  
Sbjct: 549 EYATKLHKKLIDLGIYSELDIRDEKIGYKIREANGEQKIPVQLVIGKNEVLENTVNVRRF 608

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            +      +++E IN      +
Sbjct: 609 GSTDSVTKNVDEFINELLDEIN 630


>gi|163788630|ref|ZP_02183075.1| N-acetylmuramic acid-6-phosphate etherase [Flavobacteriales
           bacterium ALC-1]
 gi|159875867|gb|EDP69926.1| N-acetylmuramic acid-6-phosphate etherase [Flavobacteriales
           bacterium ALC-1]
          Length = 646

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 157/443 (35%), Gaps = 37/443 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L T    +  +G+  WLP G    + +   ++  Q + G 
Sbjct: 231 LHLLEEAKKRDHRKLGKELELFT-FSQKVGQGLPLWLPKGAALRERLENFLKAAQKKAGY 289

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             +  P +   +L+V SG Y  YG++  +     + D+  +  P +     +I+ +   S
Sbjct: 290 EMVVTPHIGQKELYVTSGHYAKYGEDSFQPIKTPKEDEEFLLKPMNCPHHCEIYNNKPYS 349

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y+ LP  F +    +R E      G+ R R F   DA+ F  TP+     + ++    L 
Sbjct: 350 YKELPKRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPDQLDAEFKEVIDLVLY 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +F  LG +    +                       +    ++       +      D  
Sbjct: 409 VFGSLGFEDFTAQVSLRDPES-------------PDKYIGDEEHWKKAEDAILNAAIDKG 455

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               +     A Y    D     + D+L    ++    ++                 T+K
Sbjct: 456 LNYVVETGEAAFYGPKLDFM---VRDALGRQWQLGTIQVDYTLP--------ERFDLTYK 504

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G+D + H    +     G+M    A++     G   +W        IS+       +   
Sbjct: 505 GSDNELHRPVMIHRAPFGSMERFIAILLEHTGGNFPLWLMPEQAIIISI------SEKYE 558

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              EK+   L         D+  E +G +   A++  FP  +IVG +   D+ + ++   
Sbjct: 559 KYAEKVLNLLENDEIRALADNRNETVGKKIREAEMQKFPFMIIVGEQEAQDNTITVRQHG 618

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 +++++ +N    R + +
Sbjct: 619 GEDLGTITVKDFVNIVKDRINKS 641


>gi|121601812|ref|YP_988945.1| threonyl-tRNA synthetase [Bartonella bacilliformis KC583]
 gi|166223323|sp|A1USJ2|SYT_BARBK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120613989|gb|ABM44590.1| threonyl-tRNA synthetase [Bartonella bacilliformis KC583]
          Length = 658

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 149/445 (33%), Gaps = 39/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L      +   G+  W P G K   N+ + +R   + 
Sbjct: 233 KAYLNMLEEAEKRDHRRLGREMDLF--HFQEEGPGMIFWHPKGWKMFQNLVSYMRRRLDE 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y + M +         ++      P +      IF
Sbjct: 291 HKYDEVNAPQVLDKSLWETSGHWGWYQENMFKTIPATNDWNDEHVYALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  L  R E      G+MR R F   DA+ F    + +       
Sbjct: 351 KHGLKSYRDLPIRLAEFGLLHRYEPSGSLHGLMRVRSFTQDDAHVFCTDEQLADECLKIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G + I ++  + P     S E    A+     V   K           T
Sbjct: 411 -DLILSTYADFGFEEIILKLSTRPEKRVGSDELWDHAENIMMSVL--KTIEKEAKGRIKT 467

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                      ++   A Y    +     L D++    +     ++    F    ++   
Sbjct: 468 SI---------LQGEGAFYGPKFEY---TLKDAIGREWQCGTTQVD----FNLPERF--- 508

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +   D +      +     G+M     ++  +  G   +W           I +  
Sbjct: 509 -EVFYINRDSEKCQPVMIHRAIFGSMERFLGILIENFAGHMPLW------LAPQQIVVTT 561

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  EKI A+L   G     D   E+I  +     L   P+ ++ G +    + V
Sbjct: 562 ITSEANEYAEKITAKLKASGLSAVSDLRSEKINYKIREHSLQKVPVILVCGKRESETNSV 621

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +  + +++ I   ++ 
Sbjct: 622 NMRRLGSMNQISLPIDQAIKQLTNE 646


>gi|330995385|ref|ZP_08319295.1| threonine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329575880|gb|EGG57404.1| threonine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 647

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 151/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L      +  KG+  WLP G      +   +++ Q R 
Sbjct: 231 EYLTLLEEAKKRDHRKIGKEMELFM-FSERVGKGLPMWLPKGTALRLRLEDFLKKIQKRY 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G  ++  P +   +L+V SG Y  YGK+  +       D+  +  P +     +I+    
Sbjct: 290 GYQQVMTPHIGGKNLYVTSGHYAHYGKDSFQPIHTPEADEEYMLKPMNCPHHCEIYAWKP 349

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    +R E      G+ R R F   DA+ F    +        M    
Sbjct: 350 RSYKDLPLRIAEFGTVYRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDEFIRVM---- 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                        ++   G +  D     I L D    + +   D +     +   +   
Sbjct: 406 -----------EIIQIIFGALNFDTFEAQISLRDPNNREKYIGSDEVWEEAENAIIEACK 454

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              LN+ VE    A Y    D     + D+L    ++    ++                 
Sbjct: 455 EKGLNAKVEYGEAAFYGPKLDFM---VKDALGRRWQLGTIQVDYNLP--------ERFKL 503

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G D + H    +     G+M    AV+     G   +W           + I    +
Sbjct: 504 EYTGEDNQKHRPVMIHRAPFGSMERFCAVLIEHTAGHFPLW------LTPDQVAILPISE 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+ A   +       DD  E+IG +    ++   P  +IVG K  +D  V ++
Sbjct: 558 KFNDYAHKLCAYFDERDVRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAADGTVSVR 617

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M  E+     +    N
Sbjct: 618 KQGEGDQGSMKFEDFAKKINEEVRN 642


>gi|83746821|ref|ZP_00943869.1| Prolyl-tRNA synthetase [Ralstonia solanacearum UW551]
 gi|83726590|gb|EAP73720.1| Prolyl-tRNA synthetase [Ralstonia solanacearum UW551]
          Length = 626

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 127/277 (45%), Positives = 176/277 (63%), Gaps = 5/277 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G +A+  V  I+REE
Sbjct: 53  MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYTYMPVGLRAIRKVEQIVREE 112

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+EM +P +Q  +LW E+GR+D  G+E++R+ DR+++ ++  PT EEV+TDI R+
Sbjct: 113 MNAAGAVEMLMPVVQPGELWQETGRWDKMGEELMRVKDRHERDLVIQPTSEEVVTDIART 172

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KMF +
Sbjct: 173 EIRSYKQMPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDVEGMKVSYQKMFDA 232

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL    + A++G IGG  SHEF V+A+TGE  +       D+    E  +  
Sbjct: 233 YTRIFQRFGLAFRAVAADNGAIGGSGSHEFHVIAETGEDAIVY-SPESDYAANIEAAEAL 291

Query: 241 DIISLNSIVEQWTA----PYAATSDVHNEKLFDSLPE 273
              +  S   +  A    P  A  +   E+L  +L  
Sbjct: 292 VPAAPRSPAAEPLAKTPTPGRAKCEAVAEQLGIALQR 328



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/172 (39%), Positives = 102/172 (59%), Gaps = 3/172 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    D  P+ K      RGIEVGH+F  GT+YS  MSATF   +GK   +
Sbjct: 434 PEAEVADLRNVVEGDPSPDGKGSLAICRGIEVGHVFMLGTRYSESMSATFLDENGKTQPM 493

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +     +  R   ++++A 
Sbjct: 494 VMGCYGIGITRILGAAIEQNYDARGIIWPVSIAPFEVVICPVGYDRSEAVRAEADRLHAE 553

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           L+  G DV  DD GE+ G  FA  +L+G P +V+VG + + + K+E++ R  
Sbjct: 554 LAAAGIDVILDDRGERPGVMFADWELIGVPFRVVVGERGLKEGKLELQGRRD 605


>gi|257869188|ref|ZP_05648841.1| threonyl-tRNA synthetase [Enterococcus gallinarum EG2]
 gi|257803352|gb|EEV32174.1| threonyl-tRNA synthetase [Enterococcus gallinarum EG2]
          Length = 646

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 159/441 (36%), Gaps = 30/441 (6%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L   +  +   G+  WLP G      +   I +++   G
Sbjct: 231 FIRLREEAKERDHRKLGKELDLFM-LSPEVGAGLPFWLPKGATIRRTIERYIVDKEVSLG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKS 124
              +  P + + DL+  SG +D Y ++M    D  D  M +  P +      ++++ I S
Sbjct: 290 YQHVYTPIMANVDLYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIHS 349

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    ++ +  R E       ++    +  +     + P+  K  + +     + +
Sbjct: 350 YRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLDLMVEV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +    +     R                     + + F      +          D++  
Sbjct: 410 YKDFNVTDYRFRLS-------------YRDPENKDKYFDDDAMWENAQTMLKAAMDELNL 456

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV   ++  +L   + +S   ++    F    ++      T+ G
Sbjct: 457 DYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTYVG 505

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +        D 
Sbjct: 506 EDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--DAHSDY 562

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +I  RL   G  V  DD  E++G +   + +   P Q++VG + V D+ V I+   + 
Sbjct: 563 AYEIKERLQSQGLRVEVDDRNEKMGYKIRASQMQKIPYQLVVGDQEVKDATVNIRRYGSK 622

Query: 425 IREDMSLEEVINYASHRFSNN 445
                 L   ++  +    N 
Sbjct: 623 ETNVEELNIFVDAMAAEVKNY 643


>gi|127512960|ref|YP_001094157.1| threonyl-tRNA synthetase [Shewanella loihica PV-4]
 gi|166225499|sp|A3QEK0|SYT_SHELP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126638255|gb|ABO23898.1| threonyl-tRNA synthetase [Shewanella loihica PV-4]
          Length = 642

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 138/439 (31%), Gaps = 40/439 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + + + G+  W   G      +   IR++  +   
Sbjct: 233 LTRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSLFLELERFIRQKLGQYTY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y + M       ++     P +      IF   +KSYR
Sbjct: 291 QEVKGPLMMDRVLWERSGHWDKYSEAMFT-THSENREYAVKPMNCPGHVQIFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F    +  +   +         +
Sbjct: 350 DLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVQQE-VSGCIKMVYDTY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G   I ++  + P                           D    +           
Sbjct: 409 ATFGFHDIVVKLSTRPEKR-----------------IGDDAMWDRAEQALMDALKANDIE 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I+    A Y    +     L D L    +     ++       G        AT+   
Sbjct: 452 YEILPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPGRLG--------ATYVAE 500

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D        +    +G++     ++    +     +P  +AP +  ++NI        + 
Sbjct: 501 DNSRQTPVMIHRAILGSLERFLGILI---EEYAGKFPTWLAPVQAVVMNITDK---QSEY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++       G     D   E+IG +     L   P  ++VG + + + +V ++ R   
Sbjct: 555 VDEVVKLFKDQGIRASKDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENREVAVRTRDGV 614

Query: 425 IREDMSLEEVINYASHRFS 443
               + +++       + S
Sbjct: 615 DLGKIKIDQFAAMVKEQIS 633


>gi|319938817|ref|ZP_08013181.1| threonyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
 gi|319811867|gb|EFW08133.1| threonyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
          Length = 650

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 164/442 (37%), Gaps = 33/442 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      V   I + + 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISPEVGQGLPFWLPDGATIRRIVERYITDREV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSH 121
             G   +  P L S +L+  SG ++ Y ++M    D  D    +  P +     +++++H
Sbjct: 287 NDGYQHVYTPPLASVELYKTSGHWEHYQEDMFPPMDMGDGEQFVLRPMNCPHHIEVYKNH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    ++ +  R E       ++    +  +     + PE  +  +  +    
Sbjct: 347 VHSYRELPIRIAELGMMHRFEKSGALSGLQRVREMTLNDSHLFVMPEQIQEEFKHVLDLM 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    +     R                     + + F + +  +          DD
Sbjct: 407 IDVYKDFNITDYRFRLS-------------YRDPNDKHKYFDNDEMWENAQRMLKGAMDD 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    DV   ++  +L   + +S   ++    F    ++ L     
Sbjct: 454 LGLDYFEAEGEAAFYGPKLDV---QVKTALGNEETLSTIQLD----FLLPERFDLH---- 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG++H   M     G +  +   I    +     +P  +AP ++++I I   ++  
Sbjct: 503 YVGADGEEHRPVMIHR--GIVSTMERFIAYLIETYKGAFPTWLAPHQVTVIPI--SNEAH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   K+   L   G  V  D+  E++  +   +     P Q+IVG K  +D  V ++  
Sbjct: 559 ADYAWKVAKELRNRGVRVDVDERNEKMQYKIRQSQTHKVPYQLIVGDKEQADGTVNVRRY 618

Query: 422 LTGIREDMSLEEVINYASHRFS 443
                   ++ E +N+     +
Sbjct: 619 GQKQTHTETIAEFVNHILADIA 640


>gi|254253311|ref|ZP_04946629.1| Prolyl-tRNA synthetase [Burkholderia dolosa AUO158]
 gi|124895920|gb|EAY69800.1| Prolyl-tRNA synthetase [Burkholderia dolosa AUO158]
          Length = 578

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 137/288 (47%), Positives = 183/288 (63%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLDESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +       DF    E  +  
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYCPT-SDFAANVEAAEAL 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
               +  +    +++   P  A  +   E L   L    +      + 
Sbjct: 240 PLIAERAAPVEALQKVATPGKAKCEAVAELLNIPLERTIKSIVLATDN 287



 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/179 (40%), Positives = 101/179 (56%), Gaps = 3/179 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPDVADVRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YG+G  R++ A IE + D KGIIWP+S+APF++ L  +        R+A +K+YA 
Sbjct: 442 LMGCYGVGITRILGAAIEQNFDDKGIIWPESIAPFEVVLCPMGYDRSDAVREAADKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L   G DV  DD GE+ G  FA  +L+G P +V++G + + + K+E + R       + 
Sbjct: 502 LVAAGIDVILDDRGERPGVMFADWELIGVPHRVVIGERGLKEGKIEYQGRRDTEATLLP 560


>gi|319426918|gb|ADV54992.1| prolyl-tRNA synthetase [Shewanella putrefaciens 200]
          Length = 571

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 121/237 (51%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGMMRSREFLMKDAYSFHLDVDTMNEAYEAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +       D+    E  
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAY-STGSDYAANIEKA 236



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 111/207 (53%), Gaps = 3/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +    
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  LS  G +V  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLSAAGIEVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
            K+R TG ++D+  ++++++  +   +
Sbjct: 545 YKNRRTGEKQDIPFDQLVDFLKNAVKS 571


>gi|304312891|ref|YP_003812489.1| Prolyl-tRNA synthetase [gamma proteobacterium HdN1]
 gi|301798624|emb|CBL46856.1| Prolyl-tRNA synthetase [gamma proteobacterium HdN1]
          Length = 574

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 120/243 (49%), Positives = 165/243 (67%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E+P DAE+ SHKLMLR GMI + + G+Y+W P G + L  V  I+REE
Sbjct: 1   MRASQYLLATLREDPADAEVISHKLMLRAGMIRRLAAGLYTWTPTGLRVLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P  Q A+LW ESGR+ +YG E+LR  DR+ +  + GPTHEEV++D+ R+
Sbjct: 61  MDRAGAQEVLMPVTQPAELWQESGRFQAYGPELLRFKDRHARDFVLGPTHEEVISDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY+ LP  FYQIQ KFRDE RPRFGVMR+REFLMKD+YSF +T +  + +Y  M+ +
Sbjct: 121 NVQSYKQLPANFYQIQTKFRDETRPRFGVMRAREFLMKDSYSFHMTEDCLRETYQVMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL+   + A++G IGG+ SHEF VLA  GE  +    +  D+    E  +  
Sbjct: 181 YTAIFTRLGLEFRAVLADTGSIGGNNSHEFHVLASAGEDSIAF-SNQSDYAANIEMAEAT 239

Query: 241 DII 243
            I 
Sbjct: 240 LIG 242



 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 77/193 (39%), Positives = 114/193 (59%), Gaps = 3/193 (1%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A +A  +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  ++ T    +GK  
Sbjct: 379 DANFAEVADLRNVVEGDPSPDGKGEILIRRGIEVGHIFQLGTKYSKALNVTVLDENGKSQ 438

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIY 369
            + MG YGIG  RVVAA IE ++D +GIIWPD++APF I+LI +          A E +Y
Sbjct: 439 VLPMGCYGIGVSRVVAAAIEQNNDAQGIIWPDAIAPFHIALIPMNQHKSPRVHAAAEALY 498

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            RL + G +VF+DD  E+ G +FA A+L+G P ++++G + +   +VE KHR      D+
Sbjct: 499 ERLKQAGYEVFYDDRKERPGVKFADAELIGIPHRIVIGDRGLDQQQVEYKHRTDKETSDV 558

Query: 430 SLEEVINYASHRF 442
            L++++ +   R 
Sbjct: 559 GLDQLVEFLQTRV 571


>gi|172059576|ref|YP_001807228.1| prolyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
 gi|226699123|sp|B1YSV1|SYP_BURA4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|171992093|gb|ACB63012.1| prolyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
          Length = 578

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 139/288 (48%), Positives = 182/288 (63%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDTAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +       DF    E  +  
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYCPT-SDFAANIEAAEAL 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                  +    +E+   P  A  +   E L   L    +      E 
Sbjct: 240 PLIAARAAPAEAMEKVATPGKAKCEAVAELLAIPLERTIKSIVLATEN 287



 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV + K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPEVADVRDVKKGDPSPDGKGTIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YG+G  R++ A IE + D +GIIWP+S+APF++ L  +      + R+A +K+YA 
Sbjct: 442 LMGCYGVGVTRILGAAIEQNFDDRGIIWPESIAPFEVVLCPMGYDRSDMVREAADKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R       +  
Sbjct: 502 LAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKIEYQGRRDAEATLLPA 561

Query: 432 EEVINYASHRFS 443
           +E     + +  
Sbjct: 562 DEAAATVTEKIR 573


>gi|167623946|ref|YP_001674240.1| threonyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
 gi|189083622|sp|B0TT20|SYT_SHEHH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167353968|gb|ABZ76581.1| threonyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
          Length = 642

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 143/439 (32%), Gaps = 40/439 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + + + G+  W   G      +   IR++  +   
Sbjct: 233 LNRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSLFLELEKFIRQKLGQYTY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 291 QEVKGPLMMDRVLWERSGHWDKYSDAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F    +  +     + + Y    
Sbjct: 350 DLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVQQEVSACIRMVYDTYA 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  +I ++  + P                        D  D    +           
Sbjct: 410 T-FGFSNIVVKLSTRPEKR-----------------IGDDDMWDRAEEALKKALKANDIE 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I+    A Y    +     L D L    +     ++       G        AT+   
Sbjct: 452 FEILPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPGRLG--------ATYVAE 500

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D        +    +G++     ++    +     +P  ++P ++ ++NI        D 
Sbjct: 501 DNSRQTPVMIHRAILGSLERFLGILI---EEYAGKFPAWLSPVQVVVMNITDK---QSDY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +     + G     D   E+IG +     L   P  ++VG + + +++V ++ R   
Sbjct: 555 VDNVVNLFKEHGIRATKDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENNEVAVRTREGV 614

Query: 425 IREDMSLEEVINYASHRFS 443
               M LEE      ++ S
Sbjct: 615 DLGKMQLEEFATKLKNQIS 633


>gi|182679322|ref|YP_001833468.1| threonyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635205|gb|ACB95979.1| threonyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 644

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 151/438 (34%), Gaps = 38/438 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      ++ L      +   G   W P G      + + +R  Q   G
Sbjct: 232 YLKQLEEAEKRDHRRLGREMDLF--HFQEEGPGTVFWHPKGWTLFQTLISYMRRRQQEAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E++ P +    LW  SG + +Y + M      +++     P +      IF++ +KSY
Sbjct: 290 YVEVNTPQVLDRALWETSGHWSTYRENMFITTTEDERVFALKPMNCPGHVQIFKNGLKSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R E      GVMR R F   DA+ F    +             L I
Sbjct: 350 RDLPLKIAEFGVVHRYEPSGALHGVMRVRAFTQDDAHIFCTEDQIMDEVLKIN-DLILSI 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+   T+V             E         
Sbjct: 409 YRDFGFEDIVIKLSTRPEKRVGSDEAWDKAEAALTRVL------------EKLGNQFKTG 456

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +N       A Y    +     L D++    +     ++      FG        A +  
Sbjct: 457 IN---PGEGAFYGPKLEY---TLRDAIGREWQCGTTQVDFNLPGRFG--------AFYIA 502

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G     V +     G++     ++   + G   +W   +     ++       Q   D
Sbjct: 503 PEGDKTVPVMIHRAMFGSLERFTGILIEHYAGHLPLWLSPLQIVVATIT------QEGDD 556

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A   K G  V  D   E+I  +     L   P+  ++G K  ++  V I+   +
Sbjct: 557 YAYEVMAAARKRGLRVDGDLRNEKITYKVREHSLAKVPVLFVLGKKEAAERTVSIRRLGS 616

Query: 424 GIREDMSLEEVINYASHR 441
             +  + LE+ +   +  
Sbjct: 617 NDQISLGLEQALELLAAE 634


>gi|82701584|ref|YP_411150.1| prolyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
 gi|114152221|sp|Q2YBW3|SYP_NITMU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|82409649|gb|ABB73758.1| prolyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
          Length = 569

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S +F+  L+E P +AE+ SHKLMLR G+I +   G+Y+W+PLG K L  V  I+REE
Sbjct: 1   MRASGFFISTLKEAPAEAELISHKLMLRAGIIRRLGSGLYTWMPLGLKVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW E+GR+D +G +ML++ DR+++   +GPTHEEV+TDI R 
Sbjct: 61  MDAAGALELLMPAVQPAELWRETGRWDVFGPQMLKIRDRHERDFCFGPTHEEVITDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M V+
Sbjct: 121 EIKSYRQLPLNFYQIQTKFRDEVRPRFGVMRAREFVMKDAYSFHTDIPSLEETYQAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGLK  P++A++G IGG  SHEF VLAD+GE  +    D  D+    E
Sbjct: 181 YCRIFDRLGLKFRPVKADTGAIGGSSSHEFHVLADSGEDAIAFCSD-SDYAANVE 234



 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 70/186 (37%), Positives = 104/186 (55%), Gaps = 3/186 (1%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K      RGIEVGHIF   TKYS  M A +    G+   ++MG YG
Sbjct: 382 DIRNVVSGDLSPDGKGKLEICRGIEVGHIFQLLTKYSEAMKANYLDESGQARPMEMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGC 377
           IG  R+VAA IE +HD +GII+P ++APF++ +I I    +   R   EK+YA LS VG 
Sbjct: 442 IGVSRIVAAAIEQNHDERGIIFPAAMAPFQVVIIPIGLKKNAEVRAEAEKLYATLSSVGI 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  ++ G  FA  +L+G P +V+VG + + +   E + R     E + L E+ ++
Sbjct: 502 EVLLDDRDDRPGVMFADMELIGIPHRVVVGERGLKEGNAEYRGRRDEKSEVVPLPEIADF 561

Query: 438 ASHRFS 443
              + +
Sbjct: 562 IKSKLA 567


>gi|227122|prf||1614347A Pro-tRNA synthetase
          Length = 572

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+L++R GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLIVRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGQASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+   + +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGQGRLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
             GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CTGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           + Y   +  
Sbjct: 563 VEYLVKQIK 571


>gi|48783|emb|CAA39134.1| ProRS [Escherichia coli]
 gi|147362|gb|AAA24420.1| prolyl-tRNA synthetase [Escherichia coli]
          Length = 572

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+L++R GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLIVRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGGQASHEFQVLAQSGEDDVVFSDT-SDYAANIE 234



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 112/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+   + +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 383 EVADIRNVVAGDPSPDGQGRLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 443 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 502

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 503 QGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 562

Query: 435 INYASHRFS 443
           + Y   +  
Sbjct: 563 VEYLVKQIK 571


>gi|53726087|ref|YP_104063.1| prolyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|238561266|ref|ZP_00442346.2| proline--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|254202783|ref|ZP_04909146.1| prolyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|254208125|ref|ZP_04914475.1| prolyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|81823924|sp|Q62GV8|SYP_BURMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|52429510|gb|AAU50103.1| prolyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|147747030|gb|EDK54107.1| prolyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|147752019|gb|EDK59086.1| prolyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|238524974|gb|EEP88404.1| proline--tRNA ligase [Burkholderia mallei GB8 horse 4]
          Length = 578

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 130/235 (55%), Positives = 168/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y+RIF R+G +  P+ A++G IGG  SHEF V+ADTGE  +       DF    E
Sbjct: 181 YVRIFTRIGFEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPT-SDFAANVE 234



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 101/179 (56%), Gaps = 3/179 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPVVADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D KGI+WP+++APF++ L  +        R+A +K+YA 
Sbjct: 442 VMGCYGIGITRILGAAIEQNFDDKGIVWPEAIAPFEVVLCPMGYDRSDAVREAADKLYAD 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       + 
Sbjct: 502 LAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGRRDAEATLLP 560


>gi|293556705|ref|ZP_06675269.1| threonyl-tRNA synthetase [Enterococcus faecium E1039]
 gi|291601167|gb|EFF31455.1| threonyl-tRNA synthetase [Enterococcus faecium E1039]
          Length = 646

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 161/448 (35%), Gaps = 34/448 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIRE 59
           +  K ++ + +E   RD      +L L   M+  +   G+  WLP G      +   I +
Sbjct: 225 KALKEYIRLREEAKERDHRKLGKELDLF--MVSPEVGSGLPFWLPKGATIRRTIERYIVD 282

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIF 118
           ++   G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++
Sbjct: 283 KEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPMDMGDGEMLVLRPMNCPHHMMVY 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           ++ I SYR LP    ++ +  R E       ++    +  +     + P+  K  + +  
Sbjct: 343 KNTIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTL 402

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NT 237
              + ++    +     R                  D   T  +   D M     +    
Sbjct: 403 ELMVAVYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKA 448

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D++       E   A Y    DV   ++  +L   + +S   ++    F    ++   
Sbjct: 449 AMDELELDYFEAEGEAAFYGPKLDV---QVKTALGTEETLSTIQLD----FLLPERFD-- 499

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              T+ G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +   
Sbjct: 500 --LTYVGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV- 555

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V 
Sbjct: 556 -DAHGDYAYEIKERLQMKGLRVEVDDRNEKMGYKIRASQTQKIPYQLVVGDKELEDATVN 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++   +       L   I+       N 
Sbjct: 615 VRRYGSKETAVEDLNIFIDAMEAEVKNY 642


>gi|238792729|ref|ZP_04636360.1| Prolyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
 gi|238727837|gb|EEQ19360.1| Prolyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
          Length = 572

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 122/235 (51%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y ++F R+ L    + A++G IGG  SHEF VLA++GE  +       D+    E
Sbjct: 181 YSKVFSRMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVF-STGSDYAANIE 234



 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 75/192 (39%), Positives = 113/192 (58%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 380 PLPQIADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     ++  E++YA 
Sbjct: 440 TMGCYGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVKELAEELYAT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE K+R  G ++ +  
Sbjct: 500 LRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVEYKNRRVGEKQMIKT 559

Query: 432 EEVINYASHRFS 443
            E+I++   +  
Sbjct: 560 SEIIDFLLGQIK 571


>gi|294619108|ref|ZP_06698603.1| threonyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|291594769|gb|EFF26151.1| threonyl-tRNA synthetase [Enterococcus faecium E1679]
          Length = 646

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 161/448 (35%), Gaps = 34/448 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIRE 59
           +  K ++ + +E   RD      +L L   M+  +   G+  WLP G      +   I +
Sbjct: 224 KALKEYIRLREEAKERDHRKLGKELDLF--MVSPEVGSGLPFWLPKGATIRRTIERYIVD 281

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIF 118
           ++   G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++
Sbjct: 282 KEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPMDMGDGEMLVLRPMNCPHHMMVY 341

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           ++ I SYR LP    ++ +  R E       ++    +  +     + P+  K  + +  
Sbjct: 342 KNTIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTL 401

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NT 237
              + ++    +     R                  D   T  +   D M     +    
Sbjct: 402 ELMVAVYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKA 447

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D++       E   A Y    DV   ++  +L   + +S   ++    F    ++   
Sbjct: 448 AMDELELDYFEAEGEAAFYGPKLDV---QVKTALGTEETLSTIQLD----FLLPERFD-- 498

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              T+ G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +   
Sbjct: 499 --LTYVGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV- 554

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V 
Sbjct: 555 -DAHGDYAYEIKERLQMKGLRVEVDDRNEKMGYKIRASQTQKIPYQLVVGDKELEDATVN 613

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++   +       L   I+       N 
Sbjct: 614 VRRYGSKETAVEDLNIFIDAMEAEVKNY 641


>gi|187479380|ref|YP_787405.1| prolyl-tRNA synthetase [Bordetella avium 197N]
 gi|114152173|sp|Q2KVA0|SYP_BORA1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|115423967|emb|CAJ50520.1| prolyl-tRNA synthetase [Bordetella avium 197N]
          Length = 576

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 133/275 (48%), Positives = 174/275 (63%), Gaps = 5/275 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y +  L+E P DAE+ASH+LM R GMI + + GIYS++PLG K +  V  IIREE
Sbjct: 1   MRASNYHINTLKEAPADAEVASHQLMTRAGMIRKLAGGIYSYMPLGLKVIRKVEHIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GAIE+ +P +Q A+LW ESGR++ YG+E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNASGAIELLMPVVQPAELWQESGRWEQYGQELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  F+ IQ KFRDE RPRFGVMR REF MKDAYSFD    G+  SY+ MF +
Sbjct: 121 EIHSYRQLPVNFFHIQTKFRDERRPRFGVMRGREFTMKDAYSFDRDEAGAGRSYDIMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-- 238
           Y RIF RLGL    + A++G IGG  SHEF V+ADTGE  +  + D  D+    E  +  
Sbjct: 181 YHRIFRRLGLAFRAVAADTGSIGGSRSHEFQVIADTGEDLLVFNPD-SDYAANIELAEAV 239

Query: 239 --FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               +       +++   P AA  +   E L   L
Sbjct: 240 SLLTERARPAEALQEVATPGAAKCEAVAELLGLPL 274



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 102/187 (54%), Gaps = 3/187 (1%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K      RGIEVGH+F+ GTKYS  + ATF    GK   +QMG YG
Sbjct: 389 DLRNVVAGDPSPDGKGTLAIQRGIEVGHVFFLGTKYSEALKATFLDETGKPALMQMGCYG 448

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGC 377
           IG  R+V A IE + D +GIIWP ++APF++ +  +     +  R+  E +Y  L + G 
Sbjct: 449 IGVTRIVGAAIEQNFDNRGIIWPRAIAPFEVVICPVGWGKSETVRNKSEALYQALREQGI 508

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD   + G  FA  +L+G PL+V +G + ++D  +E++ R       +S++  +  
Sbjct: 509 DVILDDRDARPGVMFAEWELIGVPLRVTIGDRGLNDGVIELQGRRDTETVKISVDSALKE 568

Query: 438 ASHRFSN 444
             ++   
Sbjct: 569 ILNKLET 575


>gi|124265710|ref|YP_001019714.1| prolyl-tRNA synthetase [Methylibium petroleiphilum PM1]
 gi|152112930|sp|A2SD40|SYP_METPP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|124258485|gb|ABM93479.1| prolyl-tRNA synthetase [Methylibium petroleiphilum PM1]
          Length = 581

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 121/239 (50%), Positives = 161/239 (67%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIYS++P+G + +  V AIIREE
Sbjct: 1   MKASQFFVSTLKEAPADAEITSHKLMMRAGMIKRLGAGIYSYMPMGLRVIRKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR++  G E++R+ DR+D+  I  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELLMPVVQPAELWQETGRFEKMGPELMRVKDRHDRDFIIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP  FY IQ KFRDE RPRFGVMR REF MKDAYSFD     +  SY+ M+ +
Sbjct: 121 ELRSYRQLPKNFYHIQTKFRDERRPRFGVMRGREFTMKDAYSFDRDEAAAGRSYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y RIF R GL    + A++G IGGD SHEF V+A+TGE  +       D+    E  + 
Sbjct: 181 YGRIFDRFGLSYRAVAADTGAIGGDRSHEFQVIAETGEDAIVYCPT-SDYAANIELAEC 238



 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/189 (35%), Positives = 108/189 (57%), Gaps = 3/189 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N  + D  P+ K V    RGIEVGH+FY GTKYS  M+AT+    GK   ++MG 
Sbjct: 393 VADIRNAVVGDPSPDGKGVLAIQRGIEVGHVFYLGTKYSAAMNATYLDETGKPRLMEMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R++ A IE  HD +GI+WP ++APF++ +  I        R A + ++  L  +
Sbjct: 453 YGIGVTRILGAAIEQRHDARGIVWPTAIAPFEVVICPIGYDRSAEVRQAADTLHDELQAL 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G D+  DD GE+ G+ FA  +L+G P +V++  + + + +VE++ R       +++ EV+
Sbjct: 513 GMDLMLDDRGERPGAMFADWELIGIPQRVVISDRGLKEGQVELQGRQEAEAGKLAVAEVV 572

Query: 436 NYASHRFSN 444
                R  +
Sbjct: 573 AQLRARLRD 581


>gi|283850295|ref|ZP_06367584.1| prolyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
 gi|283574321|gb|EFC22292.1| prolyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
          Length = 575

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 130/237 (54%), Positives = 170/237 (71%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y+ P L+E+P +AE+ SHKL+LR GMI + + GIY++LPLG +A++NV  I+REE
Sbjct: 1   MRLSRYYAPTLKESPAEAEVISHKLLLRAGMIRKLTAGIYTYLPLGLRAVNNVARIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q ADLW ESGR+D YG+E+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGALEILMPAVQPADLWKESGRWDFYGRELLRFVDRHDRESCLGPTHEEVVTDLVRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSFD    G+  SY  MF +
Sbjct: 121 EIRSYRQLPVNLYQVQTKFRDEIRPRFGLMRGREFVMKDAYSFDKDDAGADASYKSMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF RLGLK   + A+SG IGG  SHEF+VLA+TGE  +       D+    E  
Sbjct: 181 YARIFTRLGLKFRAVSADSGAIGGSFSHEFMVLAETGEDTIVACPAC-DYGANLEKA 236



 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 71/186 (38%), Positives = 106/186 (56%), Gaps = 2/186 (1%)

Query: 253 TAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A      D+      D+ P+        +GIEVGH+F  G KYS  +SATF    GK+ 
Sbjct: 374 DARVVDFVDLRQVAPGDTCPKCGAALDFTKGIEVGHVFKLGLKYSKALSATFLDEAGKEQ 433

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           ++ MG YGIG  R+VAA IE ++D  GI++P  +APF+ +LIN+   D+      ++IYA
Sbjct: 434 FMIMGCYGIGVSRIVAACIEQNNDASGIVFPPPIAPFEAALINLSPKDETASAKADEIYA 493

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L+K G +   DD  E+ G +F  ADL+G P+Q+ +G K ++   VE K R TG + ++ 
Sbjct: 494 ALTKAGVETLLDDRDERPGVKFKDADLIGLPIQLTLGGKGLARGIVETKDRRTGEKGELP 553

Query: 431 LEEVIN 436
           LE  + 
Sbjct: 554 LEGFLE 559


>gi|242238324|ref|YP_002986505.1| prolyl-tRNA synthetase [Dickeya dadantii Ech703]
 gi|242130381|gb|ACS84683.1| prolyl-tRNA synthetase [Dickeya dadantii Ech703]
          Length = 572

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFG+MR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGIMRAREFLMKDAYSFHTTQESLQITYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L    ++A++G IGG+ SHEF VLA +GE  +       D+    E
Sbjct: 181 YSKIFSRMDLDFRAVQADTGSIGGNASHEFQVLAASGEDDIVF-STGSDYAANIE 234



 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 69/186 (37%), Positives = 113/186 (60%), Gaps = 3/186 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + AT +  DG++  + MG Y
Sbjct: 385 ADIRNVVEGDQSPDGRGSLLIKRGIEVGHIFQLGTKYSEALKATVQVEDGRNQVLTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           GIG  RV+AA IE +HD +GIIWPD++APF+++++ +  H     ++  E IY +L   G
Sbjct: 445 GIGVTRVIAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHKSFRVQEVAESIYQQLRAKG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E KHR  G +E + + +++N
Sbjct: 505 IEVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDNDDIEYKHRRKGEKEMIKVGDIVN 564

Query: 437 YASHRF 442
           + + + 
Sbjct: 565 FLTVQI 570


>gi|238751425|ref|ZP_04612917.1| Prolyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
 gi|238710292|gb|EEQ02518.1| Prolyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
          Length = 572

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +       D+    E
Sbjct: 181 YSKIFERMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVF-STDSDYAANIE 234



 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 74/192 (38%), Positives = 113/192 (58%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 380 PLPQIADIRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYAR 371
            MG YGIG  RVVAA IE ++D +GIIWPD++APF+++++ +  H     ++  E++YA 
Sbjct: 440 TMGCYGIGVSRVVAAAIEQNYDDRGIIWPDAIAPFQVAILPMNMHKSFRVKELAEELYAT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE K+R  G ++ +  
Sbjct: 500 LRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVEYKNRRAGEKQMIKT 559

Query: 432 EEVINYASHRFS 443
            E+I++   +  
Sbjct: 560 SEIIDFLLGQIK 571


>gi|308185763|ref|YP_003929894.1| Prolyl-tRNA synthetase [Pantoea vagans C9-1]
 gi|308056273|gb|ADO08445.1| Prolyl-tRNA synthetase [Pantoea vagans C9-1]
          Length = 572

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 127/285 (44%), Positives = 178/285 (62%), Gaps = 20/285 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTQKETPSDAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q ADLW ESGR++ YG E+LR+ADR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAVEILMPVVQPADLWQESGRWEEYGPELLRIADRHERPFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF ++ E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHVSQESLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y +IF R+GL    ++A++G IGG  SHEF VLA +GE  V       D+    E     
Sbjct: 181 YSQIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIF-STDSDYAANIELAEAV 239

Query: 236 --------------NTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                           +  D  ++  +VEQ++ P   T      K
Sbjct: 240 APAGERAAPSQEMQLVETPDAKTIAELVEQFSVPVEKTVKTLIVK 284



 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 70/193 (36%), Positives = 115/193 (59%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A+ +D+ N    D  P+ K      RGIEVGHIF  GTKYS  + A+ +G DG++  +
Sbjct: 380 PLASVADIRNVVEGDLSPDGKGTLQIKRGIEVGHIFQLGTKYSDALKASVQGEDGRNQVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +        ++  E++YA 
Sbjct: 440 SMGCYGIGITRVVAAAIEQNHDDRGIIWPDALAPFEVAILPMNMQKSFRVKELAEELYAT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V  DD  E+ G  FA  +L+G P  +++G + + + ++E K R  G ++ +  
Sbjct: 500 LRAKGVEVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNQEIEYKSRRAGEKQMIKQ 559

Query: 432 EEVINYASHRFSN 444
           +E++++     + 
Sbjct: 560 DEIVDFLLKALNK 572


>gi|24374667|ref|NP_718710.1| prolyl-tRNA synthetase [Shewanella oneidensis MR-1]
 gi|81845788|sp|Q8ECI8|SYP_SHEON RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|24349306|gb|AAN56154.1|AE015752_11 prolyl-tRNA synthetase [Shewanella oneidensis MR-1]
          Length = 570

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 122/237 (51%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSYLPSGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPADLWVETGRWDKFGPELLRFKDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDMDTLNETYEAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  I  R+GL   P+ A++G IGG +SHEF VLA +GE  +       D+    E  
Sbjct: 181 YSNILSRMGLAFRPVLADTGSIGGSMSHEFHVLAQSGEDLIAY-STGSDYAANIEKA 236



 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 110/204 (53%), Gaps = 3/204 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M
Sbjct: 365 DDKHYFGINWERDLPLAQAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTNYSKSM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +AT    +GK   + MG YG+G  R+VAA IE + D +GI+WP+++APF + ++ +    
Sbjct: 425 NATVLDENGKSQVLLMGCYGVGVSRIVAAAIEQNFDDRGIVWPEAIAPFSVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++Y  LS  G DV  DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVTDIAEQLYKDLSAAGIDVLLDDRKERPGVMFADMELIGIPHTVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
            K+R TG ++D+  ++++++  + 
Sbjct: 545 YKNRRTGEKQDVPFDQIVDFLKNL 568


>gi|16124719|ref|NP_419283.1| threonyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|221233433|ref|YP_002515869.1| threonyl-tRNA synthetase [Caulobacter crescentus NA1000]
 gi|22654137|sp|Q9AAX8|SYT_CAUCR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783515|sp|B8GZS7|SYT_CAUCN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|13421637|gb|AAK22451.1| threonyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|220962605|gb|ACL93961.1| threonyl-tRNA synthetase [Caulobacter crescentus NA1000]
          Length = 655

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 139/434 (32%), Gaps = 39/434 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD       + L    I +  KG+  W P G      +   +R   +  G  E
Sbjct: 240 RIEEAEKRDHRKLGKTMDLF--HIQEEGKGMVFWHPKGWALYRVLEDYMRRRLDAAGYKE 297

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +    LW +SG  + +G  M        + +   P +      IF    KSYR L
Sbjct: 298 VKTPQILDRSLWEKSGHAEKFGHAMFMCESAEGEVLAVKPMNCPGHIQIFNVGQKSYREL 357

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +     R E      G+MR R F   DA+ F    + ++ S  +       +++ 
Sbjct: 358 PLRMAEFGACHRYEPSGAMHGIMRVRAFTQDDAHIFCREEQVTEES-ARFIELLRSVYND 416

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           LG+     +  + P     + E                   D    +     +      +
Sbjct: 417 LGMTLADTKFSTRPELRAGTDE-----------------TWDKAEAALAAAAEAAGETLT 459

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           +     A Y    +     L D++    +     ++    F    +    + A +   DG
Sbjct: 460 LQPGEGAFYGPKLEF---SLKDAIGRVWQCGTLQLD----FVLPER----LDAEYVSEDG 508

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                  +    +G+      ++  +  G   +W         ++           D   
Sbjct: 509 SKKRPVMLHRAILGSFERFIGILLENFAGALPVWLAPTQVVVATIT------SDADDYAR 562

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++  +L+K+G     D   E+I  +     L   P+  +VG K     ++ ++      +
Sbjct: 563 EVVEKLTKLGMRAELDLRNEKINYKIREHSLAKVPVIAVVGRKEAETGQLALRRLGGEGQ 622

Query: 427 EDMSLEEVINYASH 440
             +SLEE +     
Sbjct: 623 SVLSLEEALRVLKS 636


>gi|238796636|ref|ZP_04640143.1| Prolyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
 gi|238719614|gb|EEQ11423.1| Prolyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
          Length = 572

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +       D+    E
Sbjct: 181 YSKIFERMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVF-STGSDYAANIE 234



 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D  P+ +      RGIEVGHIF  GTKYS  M
Sbjct: 366 DDKHYFGINWERDLPLPQVADLRNVVEGDISPDGQGTLQIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE ++D +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNYDDRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++YA L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE
Sbjct: 486 SFRVKELAEELYATLRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            KHR  G ++ +   E+I +   +  
Sbjct: 546 YKHRRAGEKQMIKTSEIIEFLLSQIK 571


>gi|299768873|ref|YP_003730899.1| prolyl-tRNA synthetase [Acinetobacter sp. DR1]
 gi|298698961|gb|ADI89526.1| prolyl-tRNA synthetase [Acinetobacter sp. DR1]
          Length = 571

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 126/253 (49%), Positives = 173/253 (68%), Gaps = 1/253 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHTNPFVLGPTHEEVITDMARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +       D+    E  +  
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAF-STESDYAANVEMAEAV 239

Query: 241 DIISLNSIVEQWT 253
            + +  +  +++ 
Sbjct: 240 LVGARAAPTQEFK 252



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 72/192 (37%), Positives = 104/192 (54%), Gaps = 3/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A      D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G DGK
Sbjct: 379 ERDAQITEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGEDGK 438

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              V MG YGIG  RVVAA IE ++D KGI+WP ++APF+I+++ + A       +A E 
Sbjct: 439 PFTVTMGCYGIGVTRVVAAAIEQNYDDKGIMWPQAIAPFEIAIVPMNAHKSPRTLEAAEA 498

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R      
Sbjct: 499 LYAELQAQGFDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDAEAS 558

Query: 428 DMSLEEVINYAS 439
           +++ EE++   +
Sbjct: 559 NLTKEELLAKLA 570


>gi|170727590|ref|YP_001761616.1| prolyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
 gi|226701338|sp|B1KNR3|SYP_SHEWM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169812937|gb|ACA87521.1| prolyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
          Length = 569

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 123/237 (51%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P DAE+ SH+LMLR GMI +++ G+YSWLP G + L  + AI+REE
Sbjct: 1   MRVSKYLLSTQKETPADAEVISHQLMLRAGMIRRNASGLYSWLPTGLRVLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G++E+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 61  MNKAGSVEILMPMVQPADLWVETGRFEKFGPELLRFQDRHNRDFVLGPTHEEVITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E    +Y  MF +
Sbjct: 121 EVNSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDQETMDETYESMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  I  RLGL   P+ A++G IGG +SHEF VLA++GE  +       D+    E  
Sbjct: 181 YSNILTRLGLAFRPVIADTGSIGGSMSHEFHVLANSGEDLIAY-STGSDYAANIEKA 236



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/203 (34%), Positives = 111/203 (54%), Gaps = 3/203 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D   L  I  +   P A   D+ N    ++ P  +   A  RGIEVGHIF  G  YS  M
Sbjct: 365 DNKHLFGINWERNLPQAEAFDLRNIIEGEASPCGQGTIALLRGIEVGHIFQLGKNYSEAM 424

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +A     +GK   + MG YG+G  R+VAA IE +HD +GIIWPD++APF++ ++ +    
Sbjct: 425 NANVLDQNGKAQTLLMGCYGVGVSRMVAAAIEQNHDDRGIIWPDAIAPFRVGILPMNMHK 484

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +D  E++Y  LS  G +V +DD  E+ G  FA  +L+G P  V++G + +     E
Sbjct: 485 SHRVQDMAEQLYKDLSDAGIEVLFDDRKERAGVMFADMELIGLPHVVVIGDRNIDAGVFE 544

Query: 418 IKHRLTGIREDMSLEEVINYASH 440
            K+R TG ++++  ++++ +   
Sbjct: 545 YKNRRTGEKQEVPFDQIVEFLKS 567


>gi|300702990|ref|YP_003744592.1| proline--tRNA ligase [Ralstonia solanacearum CFBP2957]
 gi|299070653|emb|CBJ41948.1| Proline--tRNA ligase [Ralstonia solanacearum CFBP2957]
          Length = 574

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 120/235 (51%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G +A+  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYTYMPVGLRAIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+EM +P +Q  +LW E+GR+D  G+E++R+ DR+++ ++  PT EEV+TDI R+
Sbjct: 61  MNAAGAVEMLMPVVQPGELWQETGRWDKMGEELMRVKDRHERDLVIQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KMF +
Sbjct: 121 EIRSYKQMPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDVEGMKVSYQKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL    + A++G IGG  SHEF V+A+TGE  +       D+    E
Sbjct: 181 YTRIFQRFGLAFRAVAADNGAIGGSGSHEFHVIAETGEDAIVY-SPESDYAANIE 234



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 109/192 (56%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    D  P+ K      RGIEVGH+F  GT+YS  MSATF   +GK   +
Sbjct: 382 PEAEVADLRNVVEGDPSPDGKGTLAICRGIEVGHVFMLGTRYSESMSATFLDENGKTQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +     +  R   ++++A 
Sbjct: 442 VMGCYGIGITRILGAAIEQNYDARGIIWPVSIAPFEVVICPVGYDRSEAVRAEADRLHAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G DV  DD GE+ G  FA  +L+G P +V+VG + + + K+E++ R       ++ 
Sbjct: 502 LAAAGIDVILDDRGERPGVMFADWELIGVPFRVVVGERGLKEGKLELQGRRDEAATAVAP 561

Query: 432 EEVINYASHRFS 443
            +V+     R +
Sbjct: 562 ADVLATLKSRLA 573


>gi|330685703|gb|EGG97342.1| threonine--tRNA ligase [Staphylococcus epidermidis VCU121]
          Length = 523

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 153/445 (34%), Gaps = 33/445 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L          G+  WLP G      +   I +++  
Sbjct: 107 KAHLEMLEERKERDHRKIGKDLELFAN-SQLVGAGLPLWLPNGATIRREIERYIVDKEVS 165

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++   M+  P +      ++ +  
Sbjct: 166 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMKLDETEEMVLRPMNCPHHMMVYNNKP 225

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++     
Sbjct: 226 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIQ 285

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDD 241
            ++   G +    R                  D  + + +   D   +          D+
Sbjct: 286 DVYKDFGFEDYRFRLS--------------YRDPEDKEKYFDDDEMWNKAENMIKEAADE 331

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  ++ + + +S   ++    F    ++      T
Sbjct: 332 LGLSYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERF----ELT 380

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G DG+ H   +   G+ +         +           +    +I  +N+  H    
Sbjct: 381 YIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVEIIPVNLDLH---- 436

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + I   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++  
Sbjct: 437 YDYAKSIQDELKSQGVRVEIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNEVNVRKY 496

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +  +E +  +E I          +
Sbjct: 497 GSQDQETLEKDEFIWNLVDEIRLKK 521


>gi|193215696|ref|YP_001996895.1| threonyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
 gi|238692696|sp|B3QUU7|SYT_CHLT3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|193089173|gb|ACF14448.1| threonyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
          Length = 659

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/453 (17%), Positives = 158/453 (34%), Gaps = 43/453 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQ 61
             K+F  I +   RD      +L L   MI  +   G+  WLP G    + + + +++EQ
Sbjct: 239 LKKHFSQIEEAKKRDHRKLGSELELF--MISPEVGSGLPMWLPKGAILRNELESFLKDEQ 296

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML---RLADRNDKA--MIYGPTHEEVMTD 116
            R G + +  P + + +L+  SG Y  Y           D   K    +  P +      
Sbjct: 297 RRRGYLPVVTPHIGNIELYKTSGHYPYYSDSQFPPLTFTDELGKEEQYLLKPMNCPHHHQ 356

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+ S  +SYR+LP    +    +R E      G++R R F   D++ +    +       
Sbjct: 357 IYSSKPRSYRDLPIRLTEFGTVYRYEQSGELNGLIRVRGFTQDDSHIYCRQDQLVDEICK 416

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPS 234
                   +F  LG   +  R                  D   T  +  + +        
Sbjct: 417 -AIDLTQFVFKTLGFAEVQTRLSLR--------------DPENTSKYSGNNEVWVQAEQD 461

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                D +     I     + Y    D     + D++    ++    ++           
Sbjct: 462 LKDAADKMQLNYFIGLGEASFYGPKIDFI---VRDAIGRKWQLGTVQVDYVMP------- 511

Query: 295 SLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                 T+ G+DG+ H    +     G++     ++    +     +P  ++P ++ ++ 
Sbjct: 512 -ERFDLTYVGSDGQKHRPVVIHRAPFGSLERFIGILI---ENFAGNFPVWLSPVQVMVLP 567

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I       RD    +  +L   G     D+ GE++G +   A++   P   +VG K ++ 
Sbjct: 568 IT---DDFRDYAHSVLQKLLDAGIRAEIDERGEKVGKKIRDAEIKKIPYMFVVGEKEMAA 624

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + V ++    G +  M L+E I       S  +
Sbjct: 625 ASVAVRRHKEGDKGTMPLQEAIRLLQTDISTKK 657


>gi|50122450|ref|YP_051617.1| prolyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
 gi|81827028|sp|Q6D1B9|SYP_ERWCT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|49612976|emb|CAG76427.1| prolyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
          Length = 572

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLWVESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWVESGRWDQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQATYDTMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L    ++A++G IGG+ SHEF VLA +GE  +       D+    E
Sbjct: 181 YSKIFSRMDLDFRAVQADTGSIGGNASHEFQVLASSGEDDIVF-STESDYAANIE 234



 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 69/187 (36%), Positives = 109/187 (58%), Gaps = 3/187 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF  G+KYS  + AT +G DG++  + MG 
Sbjct: 384 VADIRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGSKYSEALKATVQGEDGRNQTLTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D +GIIWPD++APF ++++ +  H     ++  E IY +L   
Sbjct: 444 YGIGVTRVVAAAIEQNNDERGIIWPDAIAPFHVAILPMNMHKSFRVKEVAEDIYQQLRAK 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G ++ +   E+I
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEIEYKNRRVGEKQMIKTSEII 563

Query: 436 NYASHRF 442
           ++     
Sbjct: 564 DFLLANI 570


>gi|69245748|ref|ZP_00603614.1| Threonyl-tRNA synthetase, class IIa [Enterococcus faecium DO]
 gi|257880251|ref|ZP_05659904.1| threonyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257883051|ref|ZP_05662704.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257891365|ref|ZP_05671018.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|257893638|ref|ZP_05673291.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|258614441|ref|ZP_05712211.1| threonyl-tRNA synthetase [Enterococcus faecium DO]
 gi|260560451|ref|ZP_05832625.1| threonyl-tRNA synthetase [Enterococcus faecium C68]
 gi|293563269|ref|ZP_06677719.1| threonyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|294621403|ref|ZP_06700575.1| threonyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|314939207|ref|ZP_07846461.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|314942550|ref|ZP_07849386.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|314948402|ref|ZP_07851791.1| threonyl-tRNA synthetase [Enterococcus faecium TX0082]
 gi|314951256|ref|ZP_07854311.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|314991679|ref|ZP_07857149.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|314996805|ref|ZP_07861818.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|68195641|gb|EAN10081.1| Threonyl-tRNA synthetase, class IIa [Enterococcus faecium DO]
 gi|257814479|gb|EEV43237.1| threonyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257818709|gb|EEV46037.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257827725|gb|EEV54351.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|257830017|gb|EEV56624.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|260073453|gb|EEW61781.1| threonyl-tRNA synthetase [Enterococcus faecium C68]
 gi|291599050|gb|EFF30095.1| threonyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|291604721|gb|EFF34205.1| threonyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|313589100|gb|EFR67945.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|313593770|gb|EFR72615.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|313596608|gb|EFR75453.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|313598686|gb|EFR77531.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|313641458|gb|EFS06038.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|313645194|gb|EFS09774.1| threonyl-tRNA synthetase [Enterococcus faecium TX0082]
          Length = 646

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 161/448 (35%), Gaps = 34/448 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIRE 59
           +  K ++ + +E   RD      +L L   M+  +   G+  WLP G      +   I +
Sbjct: 225 KALKEYIRLREEAKERDHRKLGKELDLF--MVSPEVGSGLPFWLPKGATIRRTIERYIVD 282

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIF 118
           ++   G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++
Sbjct: 283 KEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPMDMGDGEMLVLRPMNCPHHMMVY 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           ++ I SYR LP    ++ +  R E       ++    +  +     + P+  K  + +  
Sbjct: 343 KNTIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTL 402

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NT 237
              + ++    +     R                  D   T  +   D M     +    
Sbjct: 403 ELMVAVYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKA 448

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D++       E   A Y    DV   ++  +L   + +S   ++    F    ++   
Sbjct: 449 AMDELELDYFEAEGEAAFYGPKLDV---QVKTALGTEETLSTIQLD----FLLPERFD-- 499

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              T+ G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +   
Sbjct: 500 --LTYVGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV- 555

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V 
Sbjct: 556 -DAHGDYAYEIKERLQMKGLRVEVDDRNEKMGYKIRASQTQKIPYQLVVGDKELEDATVN 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++   +       L   I+       N 
Sbjct: 615 VRRYGSKETAVEDLNIFIDAMEAEVKNY 642


>gi|293390782|ref|ZP_06635116.1| prolyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290951316|gb|EFE01435.1| prolyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 571

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 143/415 (34%), Positives = 195/415 (46%), Gaps = 42/415 (10%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P +A + SH+LMLR GMI   + G+Y+WLP G + L  V  IIR+E
Sbjct: 1   MRTSKYLLSTLKETPAEAAVVSHQLMLRAGMIRPLASGLYNWLPTGLRVLKKVENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKSGAIEVEMPVVQPAELWQESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYRQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHTSKESLQETYDVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP------- 233
           Y  IF RLGL    ++A++G IGG  SHEF VLA++GE  V       D+          
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLANSGEDDVIF-STESDYAANIELAEAV 239

Query: 234 -----------SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                       E  D     ++  +VEQ+  P   T      K       N+      +
Sbjct: 240 AVGERAQPTKTMELVDTPKAKTIAELVEQFNLPIEKTVKTLIAK-----GANEEQPLVAL 294

Query: 283 EVGHIFYFGTKYSLP-----MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            +          +           F         +  G   +G + +   VI        
Sbjct: 295 ILRGDHELNEVKAEKLAEVASPLEFADEAAIKAKIGAGVGALGPVNLNIPVIIDRSVALM 354

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYA-------------RLSKVGCDV 379
             +            NI     V       I                L K G +V
Sbjct: 355 SDFGAGANIDGKHYFNINWERDVALPKVADIRNVVEGDPSPDGKGTLLIKRGIEV 409



 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNINWERDVALPKVADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGDKYSQAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
           +AT +G DG+   V MG YGIG  RVVAA IE  HD +  I   D++APF ++++ +   
Sbjct: 424 NATVQGEDGRPMVVTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDAIAPFTVAIVPMNMY 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E +Y  L   G +V +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFAEDLYRTLQAQGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++  +++++   + +
Sbjct: 544 EYKNRRTGEKQMIAKAQLLDFLKSQIN 570


>gi|311259273|ref|XP_003128020.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like [Sus
           scrofa]
          Length = 472

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 149/457 (32%), Positives = 231/457 (50%), Gaps = 46/457 (10%)

Query: 3   RSKYFLPI-LQEN--------PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P  L+E+        P D    S +LML+ G+IH  S G Y  LP   +A++ +
Sbjct: 39  LSRVFQPQNLREDQVLSLEGRPGDLTCKSQRLMLQVGLIHPASPGCYHLLPYTVRAMEKL 98

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             ++ +E    G  ++++P+L  A+LW  + R+DS GKE+LRL DR+ K    GPTHEE 
Sbjct: 99  VRVVDQEMQAIGGQKVNMPSLSPAELWRATSRWDSMGKELLRLRDRHGKEYCLGPTHEEA 158

Query: 114 MT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T  +      SY+ LP   YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ 
Sbjct: 159 ITALVASQKTLSYKQLPVLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAARR 218

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y+ +  +Y  +F RLGL+ + ++A+ G IGG +SHEF +  D GE ++           
Sbjct: 219 TYSLVCDAYGSLFDRLGLQCLQVQADVGSIGGTMSHEFQLPVDVGEDRLALCPRC----- 273

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                +  A    +   +      +      +GIEVGH FY GT
Sbjct: 274 ---------------------SFSANVETLDLAQTNCPACQGPLTETKGIEVGHTFYLGT 312

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F    GK    +MG YG+G  R++AA IE       I WP  +AP+++ LI
Sbjct: 313 KYSSIFNAQFTNVHGKASLAEMGCYGLGVTRILAAAIEVLSAEDCIRWPGLLAPYQVCLI 372

Query: 353 NIKA--HDQVCRDACEKIYARLSKV-----GCDVFWDDMGE-QIGSQFAVADLLGFPLQV 404
             K    ++   +    +Y  +++      G +V  DD     IG++   AD LG+P  +
Sbjct: 373 PPKKGSKEEAAAELTGHLYDHITEAVPQLRG-EVLLDDRTHLTIGNRLKDADKLGYPFVI 431

Query: 405 IVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASH 440
           I G + + +    E++ + TG    ++ E V+   S 
Sbjct: 432 IAGKRALDEPAHFEVRCQNTGEVVFLTREGVLELLSQ 468


>gi|239826651|ref|YP_002949275.1| prolyl-tRNA synthetase [Geobacillus sp. WCH70]
 gi|259511599|sp|C5D9C3|SYP_GEOSW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|239806944|gb|ACS24009.1| prolyl-tRNA synthetase [Geobacillus sp. WCH70]
          Length = 567

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 122/235 (51%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P L+E P DAE+ SH+L+LR G I Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQSFIPTLREVPADAEVKSHQLLLRAGFIRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P LQ A+LW +SGR+ SYG E++RL DR+++    GPTHEE++T + R 
Sbjct: 61  MNRAGAIELLMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFALGPTHEEIITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP T YQIQ+KFRDE RPRFG++R REF+MKDAYSF  + E    +YNKM+ +
Sbjct: 121 EVKTYKRLPLTLYQIQVKFRDEKRPRFGLLRGREFIMKDAYSFHTSQESLDETYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL    + A+SG IGG  +HEF+VL++ GE  +  S    D+    E
Sbjct: 181 YSNIFRRCGLNFRAVIADSGAIGGKDTHEFMVLSEIGEDTIAYSD-ASDYAANIE 234



 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 113/190 (59%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+ K      RGIEVGH+F  GT+YS  M+AT+   +G+   + 
Sbjct: 378 ISEYADLRFIQEGDPSPDGKGTIRFARGIEVGHVFKLGTRYSKAMNATYLDENGRSQTMI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R+VAA+ E   D  G++WP SVAPF + LI++ A ++  R   ++ Y +L 
Sbjct: 438 MGCYGIGVSRLVAAIAEQFADENGLVWPASVAPFHVHLISVNAKNEEQRQLADEWYEKLG 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V +DD  E+ G +FA +DL+G P++V VG +  ++  VEIK R TG   ++S++E
Sbjct: 498 QAGFEVLYDDRPERAGVKFADSDLIGIPIRVTVGKR-ANEGIVEIKVRQTGESMEVSVDE 556

Query: 434 VINYASHRFS 443
           +I+       
Sbjct: 557 LIDTIRRLLQ 566


>gi|167825898|ref|ZP_02457369.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 9]
 gi|226196858|ref|ZP_03792437.1| proline--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|254299336|ref|ZP_04966786.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|157809003|gb|EDO86173.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|225931118|gb|EEH27126.1| proline--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
          Length = 578

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 131/235 (55%), Positives = 169/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  +       DF    E
Sbjct: 181 YVRIFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPT-SDFAANVE 234



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 101/179 (56%), Gaps = 3/179 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPVVADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D KGI+WP+++APF++ L  +        R+A +K+YA 
Sbjct: 442 VMGCYGIGITRILGAAIEQNFDDKGIVWPEAIAPFEVVLCPMGYDRSDAVREAADKLYAD 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       + 
Sbjct: 502 LAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGRRDAEATLLP 560


>gi|319407312|emb|CBI80953.1| Threonyl-tRNA synthetase [Bartonella sp. 1-1C]
          Length = 654

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 150/445 (33%), Gaps = 39/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L      + S G+  W P G K   N+ + +R   + 
Sbjct: 233 KAYLHMLEEAEKRDHRRLGREMDLF--HFQEESPGMIFWHPKGWKMFQNLISYMRRRLDN 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
               E+  P +    LW  SG +  Y + M +         ++      P +      IF
Sbjct: 291 HKYAEVQAPQVLDKSLWEISGHWGWYKENMFKTIPAADDWNDECTYALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  L  R E      G+MR R F   DA+ F    + +    +  
Sbjct: 351 KHGLKSYRDLPVRLAEFGLVHRYEPSGSLHGLMRVRSFTQDDAHIFCTEEQLADECLSIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G K I ++  + P     S E    A+   T V             E +
Sbjct: 411 -DLILSTYADFGFKEISLKLSTRPEKRVGSDELWDHAENIMTSVL--------KTIEEKS 461

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                IS+   +    A Y    +     L D++    +     ++      FG      
Sbjct: 462 SGCVKISI---LPGEGAFYGPKFEYI---LTDAIGREWQCGTTQVDFNLPERFG------ 509

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   D +      +     G+M     ++  +  G    W         ++     
Sbjct: 510 --AFYIDKDSEKRQPVMIHRAIFGSMERFLGILIENFAGHIPFWLAPQQIVVATIT---- 563

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  +KI  +L  +G     D   E+I  +     L   P+ ++ G +    + V
Sbjct: 564 --SDANEYAKKITEKLKALGLSAKLDSRNEKINYKIREHSLQKIPVILVCGKQEAQTNSV 621

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +  + +E+V       
Sbjct: 622 NVRRLGSVEQTFLPIEKVFAQLLDE 646


>gi|325123334|gb|ADY82857.1| prolyl-tRNA synthetase [Acinetobacter calcoaceticus PHEA-2]
          Length = 571

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 126/253 (49%), Positives = 172/253 (67%), Gaps = 1/253 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHTNPFVLGPTHEEVITDMARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +       D+    E  +  
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAF-STESDYAANVEMAEAV 239

Query: 241 DIISLNSIVEQWT 253
            +    +  +++ 
Sbjct: 240 LVGERAAPTQEFK 252



 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/192 (38%), Positives = 105/192 (54%), Gaps = 3/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A  +   D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G DGK
Sbjct: 379 ERDAQISEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGEDGK 438

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              V MG YGIG  RVVAA IE ++D KGIIWP ++APF+I+++ + A       +A E 
Sbjct: 439 PFTVTMGCYGIGVTRVVAAAIEQNYDDKGIIWPQAIAPFEIAIVPMNAHKSPRTLEAAES 498

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R      
Sbjct: 499 LYAELQAQGFDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDAEAS 558

Query: 428 DMSLEEVINYAS 439
           +++ EE++   +
Sbjct: 559 NLTKEELLAKLA 570


>gi|303248736|ref|ZP_07334989.1| threonyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
 gi|302489901|gb|EFL49829.1| threonyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
          Length = 647

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 82/436 (18%), Positives = 150/436 (34%), Gaps = 42/436 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             KY   + +   RD      +L L +    +   G+  W P G+     +    R E  
Sbjct: 228 LKKYLRHLEEAKKRDHRKLGTQLDLFS-FSEEVGAGMPIWHPKGELIRTILEDFERREHL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G   +  P +   +LW  SG YD+Y + M    + + +A    P +      I++S +
Sbjct: 287 RRGYQLVRGPLILRRELWERSGHYDNYRENM-YFTEIDGQAYGIKPMNCLSHMLIYKSRV 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  ++++ +  R E      G+MR R+F   DA+      +        +    
Sbjct: 346 RSYRDLPQRYFELGVVHRHEKSGVLHGLMRVRQFTQDDAHILCRPDQLLDE-ITGVIKFV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +    G         + P     S E                   D    +     + 
Sbjct: 405 QDVVALFGFDYEVD-LSTRPEKSIGSDE-----------------DWDRATKALIDAMES 446

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     I E   A Y    D+   KL D+L    + +    +    F    ++       
Sbjct: 447 LGLPYDINEGDGAFYGPKIDI---KLKDALERRWQCATVQCD----FTLPERFD----LV 495

Query: 302 FKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +  ADG+     M    I     R +  +IE +            A   I          
Sbjct: 496 YTDADGERKRPVMLHRVILGAVERFLGVLIEHTAGALPTWLSPEQARILIVT-------D 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             ++  E+  A+L++ G  V  D+  E++G +   A +   P  ++ G K      + ++
Sbjct: 549 AQKEFAEEAKAKLAEAGIRVELDERNEKLGFKVREAQMEKVPYMLVAGDKEKELGGLNVR 608

Query: 420 HRLTGIREDMSLEEVI 435
            R        SL+E++
Sbjct: 609 LRSGENLGVKSLDEIV 624


>gi|163756231|ref|ZP_02163346.1| uracil phosphoribosyltransferase [Kordia algicida OT-1]
 gi|161323843|gb|EDP95177.1| uracil phosphoribosyltransferase [Kordia algicida OT-1]
          Length = 647

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 162/445 (36%), Gaps = 39/445 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T    +  +G+  WLP G      +   +++ Q + G
Sbjct: 230 YLHLLEEAKKRDHRKLGKELELFT-FSQKVGQGLPLWLPKGAALRSQLENFLKKAQQKAG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +  P +   +L+V SG Y  YG++  +     + D+  +  P +     +I+ +   
Sbjct: 289 YEMVISPHIGQKELYVTSGHYAKYGEDSFQAINTPKEDEEFLLKPMNCPHHCEIYNTKPF 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP  + +    +R E      G+ R R F   DA+ F  TP+     +  +    +
Sbjct: 349 SYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPDQLDQEFKNVIDLVM 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  LG  +   +                  D  + + +           +   +    
Sbjct: 408 YVFESLGFDNFTAQVSLR--------------DPEKPEKYIGSTENWEKAENAIINAAKE 453

Query: 243 ISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             LN ++E    A Y    D     + D+L  + ++    ++                 T
Sbjct: 454 KELNYVIEYGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERFDLT 502

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +KG+D + H    +     G+M    A++     G   +W  +     + +       + 
Sbjct: 503 YKGSDNELHRPVMIHRAPFGSMERFIAILLEHTGGNFPLWLMTEQAILLPV------SEK 556

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +K+   L         D+  E +G +   A++   P  +I+G +   D  V ++ 
Sbjct: 557 YENYGKKVLTLLENHEIRAQIDNRNETVGKKIREAEMSKVPFMLIIGEQEEKDGTVSVRR 616

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
              G    +++E   +      +N+
Sbjct: 617 HGVGDIGTLTMEAFADMVKEEINNS 641


>gi|254427770|ref|ZP_05041477.1| prolyl-tRNA synthetase [Alcanivorax sp. DG881]
 gi|196193939|gb|EDX88898.1| prolyl-tRNA synthetase [Alcanivorax sp. DG881]
          Length = 572

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 125/291 (42%), Positives = 175/291 (60%), Gaps = 6/291 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  ++E P DA + SH+LMLR GM+ + + G+Y+WLP G + L  V  +IREE
Sbjct: 1   MRTSQYLLATVKETPADAVVTSHQLMLRAGMVRKLASGLYTWLPSGLRVLRKVEQVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q  +LW ESGR  +YG E+LR+ DR++     GPTHEEV+TD+ R+
Sbjct: 61  MDRAGAQEVLMPVVQPMELWEESGRAPAYGPELLRITDRHNNPFCLGPTHEEVITDMVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKDAYSF    +    +Y  M  +
Sbjct: 121 ELHSYKQLPANFYQIQTKFRDEIRPRFGIMRSREFIMKDAYSFHTNMDSLADTYQIMHRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----N 236
           Y  IF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E     
Sbjct: 181 YCAIFDRLGLDYRPVEADTGAIGGAASHEFHVLAESGEDDIAFSD-GSDYAANVELAEAL 239

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN-KRVSARGIEVGH 286
               +  +  + +E    P A T +    +    + +  K +  +G E G 
Sbjct: 240 APAIERPAPGAAMETVDTPNARTIEELVAQFDLPIEKTIKTLVVKGAEEGQ 290



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 68/210 (32%), Positives = 114/210 (54%), Gaps = 4/210 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLP 297
           +D     +I  +        +D+ N    D  P+        RGIEVGHIF  GTKYS  
Sbjct: 363 EDGKHHFNINWERDVALPQIADLRNVVNGDPSPDGTGTLSIKRGIEVGHIFQLGTKYSEA 422

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-A 356
           + AT    +GK   + MG YGIG  RVVAA IE ++D +GIIWP+++APF+++LI +   
Sbjct: 423 LGATVLDENGKSVVMPMGCYGIGVTRVVAAAIEQNNDDRGIIWPEAIAPFQVALIPVNIK 482

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                R+  E +YA L+  G +V +DD   E++G + A ++L+G P ++++  + + +  
Sbjct: 483 KSPRERELAETLYAELTAAGIEVIFDDREKERLGVKLADSELIGIPHRIVIAERGMDNGV 542

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +E K R    + ++ ++ V+ +   +   N
Sbjct: 543 LEYKGRGDADKTEVPVDVVVAFIKGKLGTN 572


>gi|253988145|ref|YP_003039501.1| prolyl-tRNA synthetase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253779595|emb|CAQ82756.1| prolyl-tRNA synthetase [Photorhabdus asymbiotica]
          Length = 574

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 133/278 (47%), Positives = 176/278 (63%), Gaps = 18/278 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+W+P G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVVSHKLMLRAGMIRKLASGLYNWMPTGIRVLKKVEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR ADR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRFADRGDRPFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T +QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLTLFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQESLQETYDNMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC---------------SK 225
           Y +IF R+GL    + A++G IGG  SHEF VLA +GE  +                   
Sbjct: 181 YSKIFTRIGLDFRAVLADTGSIGGSASHEFQVLAASGEDDIVFSTESNYAANIELAEAVA 240

Query: 226 DFMDFPIPSENTDFDDI---ISLNSIVEQWTAPYAATS 260
              D   P+E+    D     ++  +VEQ+  P   T 
Sbjct: 241 PAYDRAAPAEDMYLVDTPNAKTIAELVEQFNLPIEKTV 278



 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 76/205 (37%), Positives = 118/205 (57%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D+ P+ K   +  RGIEVGHIF  GTKYS  M
Sbjct: 366 DDKHYFGINWERDLPIPEIADIRNVVEGDASPDGKGTLLIKRGIEVGHIFQLGTKYSDAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG +  + MG YGIG  R+VAA IE +HD +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGHNQIITMGCYGIGVTRIVAAAIEQNHDNRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV +DD  E+ G  FA  +L+G P  +++G + +   +VE
Sbjct: 486 SYRVKEIAEKLYADLRACGIDVIFDDRKERPGVMFADMELIGVPHTIVIGDRNLDSGEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            K+R    ++ + L+ V+++   + 
Sbjct: 546 YKYRRCDDKQMLKLDCVVDHLKQQL 570


>gi|293569265|ref|ZP_06680563.1| threonyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|291587971|gb|EFF19821.1| threonyl-tRNA synthetase [Enterococcus faecium E1071]
          Length = 646

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 161/448 (35%), Gaps = 34/448 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIRE 59
           +  K ++ + +E   RD      +L L   M+  +   G+  WLP G      +   I +
Sbjct: 225 KALKEYIRLREEAKERDHRKLGKELDLF--MVSPEVGSGLPFWLPKGATIRRTIERYIVD 282

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIF 118
           ++   G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++
Sbjct: 283 KEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPMDMGDGEMLVLRPMNCPHHMMVY 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           ++ I SYR LP    ++ +  R E       ++    +  +     + P+  K  + +  
Sbjct: 343 KNTIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTL 402

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NT 237
              + ++    +     R                  D   T  +   D M     +    
Sbjct: 403 ELMVAVYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKA 448

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D++       E   A Y    DV   ++  +L   + +S   ++    F    ++   
Sbjct: 449 AMDELELDYFEAEGEAAFYGPKLDV---QVKTALGTEETLSTIQLD----FLLPERFD-- 499

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              T+ G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +   
Sbjct: 500 --LTYVGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV- 555

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V 
Sbjct: 556 -DAHGDYAYEIKERLQMKGLRVEVDDRNEKMGYKIRASQTQKIPYQLVVGDKELEDATVN 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++   +       L   I+       N 
Sbjct: 615 VRRYGSKETAVEDLNIFIDAMEAEVKNY 642


>gi|212636240|ref|YP_002312765.1| prolyl-tRNA synthetase [Shewanella piezotolerans WP3]
 gi|212557724|gb|ACJ30178.1| Prolyl-tRNA synthetase, bacterial [Shewanella piezotolerans WP3]
          Length = 596

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 124/240 (51%), Positives = 163/240 (67%), Gaps = 1/240 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YSWLP G + L  + AI+REE
Sbjct: 27  MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYSWLPTGLRVLRKIEAIVREE 86

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G++E+ +P +Q ADLW E+GR+D +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 87  MNKAGSVEILMPMVQPADLWQETGRFDKFGPELLRFQDRHNRDFVLGPTHEEVITDIVRK 146

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E    +Y  MF +
Sbjct: 147 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLEQECMDETYEAMFQA 206

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  RLGL   P+ A++G IGG LSHEF VLA++GE  +       D+    E  +  
Sbjct: 207 YNNILTRLGLSFRPVMADTGSIGGSLSHEFHVLANSGEDLIAY-STESDYAANIEKCEAP 265



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/204 (33%), Positives = 112/204 (54%), Gaps = 3/204 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A   D+ N    ++ P  K   A  RGIEVGHIF  G+ YS  M
Sbjct: 391 DDKHYFGINWERDLPSAPAFDLRNIIEGEASPCGKGTIALLRGIEVGHIFQLGSNYSEAM 450

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
            A     +GK   + MG YG+G  R+VAA IE +HD +GIIWP+++APF++ ++ +    
Sbjct: 451 HANVLDQNGKSKTLLMGCYGVGVSRMVAAAIEQNHDDRGIIWPEAIAPFQVGILPMNMHK 510

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +D  E++Y  L+  G +V +DD  E+ G  FA  +L+G P  V++G + + +   E
Sbjct: 511 SHRVKDMAEQLYQDLTDAGMEVLFDDRKERAGVMFADMELVGLPNVVVIGDRNIDNGVFE 570

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
            K+R TG ++D+  ++++ +   +
Sbjct: 571 YKNRRTGEKQDVPFDQIVEFLKAQ 594


>gi|52081397|ref|YP_080188.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52786773|ref|YP_092602.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|319647305|ref|ZP_08001527.1| threonyl-tRNA synthetase 1 [Bacillus sp. BT1B_CT2]
 gi|52004608|gb|AAU24550.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52349275|gb|AAU41909.1| ThrS [Bacillus licheniformis ATCC 14580]
 gi|317390652|gb|EFV71457.1| threonyl-tRNA synthetase 1 [Bacillus sp. BT1B_CT2]
          Length = 643

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 85/427 (19%), Positives = 157/427 (36%), Gaps = 33/427 (7%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L      +  +G+  WLP G      +   I +++   G   +  P
Sbjct: 241 AKERDHRKLGKELKLFAN-SQKVGQGLPLWLPKGATIRRVIERYIVDKELALGYEHVYTP 299

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L S DL+  SG +D Y   M    + +++ ++  P +      I+++ I SYR LP   
Sbjct: 300 VLGSKDLYETSGHWDHYQDGMFPPMEMDNETLVLRPMNCPHHMMIYKNDIHSYRELPIRI 359

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R E+     G+ R R   + DA+ F    +        +      ++   GL+
Sbjct: 360 AELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKDEFIRTVR-LIQDVYEDFGLE 418

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISLNSIVE 250
               R                  D  +T+ +   D M     S      D+I       E
Sbjct: 419 EYSFRLS--------------YRDPEDTEKYYDDDEMWNKAQSMLKEAMDEIGHDYYEAE 464

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    DV   ++  ++ + + +S   ++    F    K+      T+ G DGK H
Sbjct: 465 GEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPEKFD----LTYVGEDGKPH 513

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              +     G +  +   +    +      P  +AP +  +I +     V  D  +K+  
Sbjct: 514 RPVVIHR--GVVSTMERFVAFLIEEHKGALPTWLAPVQFQVIPVSP--SVHLDYAKKVQE 569

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           RL + G  V  D   E+IG +   A +   P  ++VG + V +  V ++       E ++
Sbjct: 570 RLQREGLRVEVDTRDEKIGYKIREAQMQKIPYMLVVGDQEVENEAVNVRKYGEQKSETVA 629

Query: 431 LEEVINY 437
           + + I  
Sbjct: 630 IADFIKK 636


>gi|261208968|ref|ZP_05923373.1| threonyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289565220|ref|ZP_06445672.1| threonyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|294615018|ref|ZP_06694907.1| threonyl-tRNA synthetase [Enterococcus faecium E1636]
 gi|260077007|gb|EEW64729.1| threonyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289163041|gb|EFD10889.1| threonyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|291592149|gb|EFF23769.1| threonyl-tRNA synthetase [Enterococcus faecium E1636]
          Length = 647

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 161/448 (35%), Gaps = 34/448 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIRE 59
           +  K ++ + +E   RD      +L L   M+  +   G+  WLP G      +   I +
Sbjct: 225 KALKEYIRLREEAKERDHRKLGKELDLF--MVSPEVGSGLPFWLPKGATIRRTIERYIVD 282

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIF 118
           ++   G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++
Sbjct: 283 KEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPMDMGDGEMLVLRPMNCPHHMMVY 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           ++ I SYR LP    ++ +  R E       ++    +  +     + P+  K  + +  
Sbjct: 343 KNTIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTL 402

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NT 237
              + ++    +     R                  D   T  +   D M     +    
Sbjct: 403 ELMVAVYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKA 448

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D++       E   A Y    DV   ++  +L   + +S   ++    F    ++   
Sbjct: 449 AMDELELDYFEAEGEAAFYGPKLDV---QVKTALGTEETLSTIQLD----FLLPERFD-- 499

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              T+ G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +   
Sbjct: 500 --LTYVGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV- 555

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V 
Sbjct: 556 -DAHGDYAYEIKERLQMKGLRVEVDDRNEKMGYKIRASQTQKIPYQLVVGDKELEDATVN 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++   +       L   I+       N 
Sbjct: 615 VRRYGSKETAVEDLNIFIDAMEAEVKNY 642


>gi|256026433|ref|ZP_05440267.1| threonyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289764445|ref|ZP_06523823.1| threonyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289716000|gb|EFD80012.1| threonyl-tRNA synthetase [Fusobacterium sp. D11]
          Length = 637

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 166/443 (37%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  K+   + +   RD      +L L    + ++  G   +LP G    + +  + R+E 
Sbjct: 226 KLKKHLKLVEEAEKRDHRKLGKELELF--FLSEYGPGFPFFLPKGMIVRNVLVDLWRKEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G +++  P + + +LW  SG + +Y + M   ++ ++      P +       F+  
Sbjct: 284 EKAGYLQLETPIMLNKELWEISGHWFNYRENMYT-SEIDEVEFAIKPMNCPGGVLAFKHQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     +   
Sbjct: 343 LHSYKDLPARLAELGKVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + + +L      +   + P     S E                   D    +     D
Sbjct: 402 IDKFYSKLFGFEYEIELSTKPEKAIGSQE-----------------IWDMAESALAGALD 444

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     I     A Y    D    K+ D++    +     ++    F    ++      
Sbjct: 445 KLGRKYKINPGDGAFYGPKLDF---KIKDAIGRMWQCGTIQLD----FNLPERFD----V 493

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G DG+ H    +     G++     ++   + G   +W   V    +++      + 
Sbjct: 494 TYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMWLAPVQVKVMTI------ND 547

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEI 418
            C    ++I A+L K+G     DD  E IG +   A+     P+Q+I+G   V + +V I
Sbjct: 548 ECVPYAKEIMAKLDKLGIRAELDDRTETIGYKIREANGRYRIPMQLIIGKNEVENKEVNI 607

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  +   SL+E  NY    
Sbjct: 608 RRFGSKDQFSKSLDEFYNYVVDE 630


>gi|257792203|ref|YP_003182809.1| prolyl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|257476100|gb|ACV56420.1| prolyl-tRNA synthetase [Eggerthella lenta DSM 2243]
          Length = 578

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 109/234 (46%), Positives = 161/234 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+E+P DAEIASH+L+LR G I + + G+Y++LPLG++ L  V  I+REE
Sbjct: 1   MRMSQLYAPTLKEDPADAEIASHRLLLRAGFIRKTASGVYTFLPLGKRVLAKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P LQ  +LW ESGR++ YG E++RL DR+D+    GPTHEE++T + R+
Sbjct: 61  MDGIGAQEIMMPALQPGELWHESGRWNDYGPELMRLVDRHDREFCLGPTHEELITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP + YQIQ+KFRDE+RPRFG++RSREF+MKDAYSF    E  + +Y+ M  +
Sbjct: 121 ELRSYKELPLSLYQIQVKFRDEIRPRFGLLRSREFIMKDAYSFHADQESLQKTYDDMSEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RI  R+G+   P+ A+ G IGG ++ EF+ LA+ GE ++            +
Sbjct: 181 YGRICDRMGMDYRPVEADPGQIGGSVTCEFMALAEAGEAELVHCTCGYAANTEA 234



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 74/184 (40%), Positives = 107/184 (58%), Gaps = 2/184 (1%)

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+   +  DS P         RGIEV  +F  G KYS  M ATF   DG +    MG
Sbjct: 374 EWADLCIVQPGDSCPSCGLPLDGARGIEVSQVFQLGDKYSKAMGATFMAEDGSEQPFLMG 433

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG+G  R +AA++E  +D  GI+WP +VAP  + +I +   D   + A EK+ + L+K+
Sbjct: 434 CYGVGISRTMAAIVEQHNDENGIMWPLTVAPAHVCVIPLTVGDDEVQPAAEKLASDLAKL 493

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G +FA ADL+G+PLQVIVG + +++ KVEIK R TG R D+ L  + 
Sbjct: 494 GLEVVIDDRKERAGVKFADADLIGWPLQVIVGKRGLAEQKVEIKRRSTGARRDIPLAALT 553

Query: 436 NYAS 439
           +  +
Sbjct: 554 DALA 557


>gi|332974215|gb|EGK11148.1| proline--tRNA ligase [Kingella kingae ATCC 23330]
          Length = 570

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 119/239 (49%), Positives = 163/239 (68%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLMLR G+I  ++ G+Y+W+P+G + L  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPAEASLASHKLMLRAGLIKANASGLYTWMPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q ADLW ESGR+D YG E+LR+ DR++    + PT EE++TDI R 
Sbjct: 61  MNRAGAIELLMPVVQPADLWKESGRWDFYGDELLRITDRHENPFCFSPTCEEMITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY I  KFRDE RPRFGVMR+REF+MKDAYSF    +  K +Y  M+ +
Sbjct: 121 EVNSYKQLPKNFYHINTKFRDERRPRFGVMRAREFVMKDAYSFHADFDSLKETYQNMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y R+F+RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E    
Sbjct: 181 YCRVFNRLGLNFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDR-SDYAANVELAQT 238



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 7/227 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDS--LPENKRVS 278
           K + DF               +     +     A      D+ N    D           
Sbjct: 344 KVYADFATEKGADWVIGANVDDYHYTGFNFGRDAAEPEFVDLRNVVEGDPSPCGSGSLKL 403

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KYS  M+ATF   +GK   ++MG YGIG  R+VAA IE ++D +GI
Sbjct: 404 ARGIEVGHVFQLRDKYSKAMNATFLDNNGKSQIMEMGCYGIGVTRIVAAAIEQNNDERGI 463

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IW D+++PF + ++ +        + A +KIYA+L   G DV  DD  E+ G     ++L
Sbjct: 464 IWTDAMSPFTVVIVPMNYKKSDDVKAAADKIYAQLQAAGVDVLLDDRDERAGVLLNDSEL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           LG P +V++G + + +  VE   R     + +S+ +++       + 
Sbjct: 524 LGIPHRVVIGDRALKEGNVEYAQRRDTESQAISVNDIVAKIVATLTK 570


>gi|157962084|ref|YP_001502118.1| threonyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
 gi|189083623|sp|A8H4U6|SYT_SHEPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157847084|gb|ABV87583.1| threonyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
          Length = 642

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 143/439 (32%), Gaps = 40/439 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + + + G+  W   G      +   IR++  +   
Sbjct: 233 LNRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSLFLELEKFIRQKLGQYTY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y + M       ++     P +      IF   +KSYR
Sbjct: 291 QEVKGPLMMDRVLWERSGHWDKYSEAMFT-TSSENREYAVKPMNCPGHVQIFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F    +  +   +         +
Sbjct: 350 DLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQVQQE-VSACIKMVYDTY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G  SI ++  + P       E                   D    +           
Sbjct: 409 ETFGFNSIVVKLSTRPEKRIGDDE-----------------MWDRAEEALKQALKANDIE 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I+    A Y    +     L D L    +     ++       G        AT+   
Sbjct: 452 FEILPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPGRLG--------ATYVAE 500

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D        +    +G++     ++    +     +P  ++P ++ ++NI        D 
Sbjct: 501 DNSRQTPVMIHRAILGSLERFLGILI---EEYAGKFPAWLSPVQVVVMNITDK---QSDY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++     + G     D   E+IG +     L   P  ++VG + + + +V ++ R   
Sbjct: 555 VDEVVNLFKEHGIRATKDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTREGV 614

Query: 425 IREDMSLEEVINYASHRFS 443
               M +EE      ++ S
Sbjct: 615 DLGKMQIEEFATKLKNQIS 633


>gi|53720607|ref|YP_109593.1| prolyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|76808687|ref|YP_334889.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121599492|ref|YP_991789.1| prolyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124386640|ref|YP_001027282.1| prolyl-tRNA synthetase [Burkholderia mallei NCTC 10229]
 gi|126449387|ref|YP_001082781.1| prolyl-tRNA synthetase [Burkholderia mallei NCTC 10247]
 gi|126455301|ref|YP_001067757.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|134280246|ref|ZP_01766957.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|167920563|ref|ZP_02507654.1| prolyl-tRNA synthetase [Burkholderia pseudomallei BCC215]
 gi|217421246|ref|ZP_03452751.1| proline--tRNA ligase [Burkholderia pseudomallei 576]
 gi|242316379|ref|ZP_04815395.1| proline--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|251766621|ref|ZP_02264460.2| proline--tRNA ligase [Burkholderia mallei PRL-20]
 gi|254178869|ref|ZP_04885523.1| prolyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|254180577|ref|ZP_04887175.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|254190985|ref|ZP_04897491.1| prolyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|254199071|ref|ZP_04905486.1| prolyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|254258028|ref|ZP_04949082.1| proline--tRNA ligase [Burkholderia pseudomallei 1710a]
 gi|81824656|sp|Q63QM5|SYP_BURPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152176|sp|Q3JNG4|SYP_BURP1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980105|sp|A3MR95|SYP_BURM7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980106|sp|A2S5R3|SYP_BURM9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980107|sp|A1V0N6|SYP_BURMS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980108|sp|A3NZI6|SYP_BURP0 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|52211021|emb|CAH37009.1| prolyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|76578140|gb|ABA47615.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121228302|gb|ABM50820.1| prolyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124294660|gb|ABN03929.1| proline--tRNA ligase [Burkholderia mallei NCTC 10229]
 gi|126228943|gb|ABN92483.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|126242257|gb|ABO05350.1| proline--tRNA ligase [Burkholderia mallei NCTC 10247]
 gi|134248253|gb|EBA48336.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|157938659|gb|EDO94329.1| prolyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|160694783|gb|EDP84791.1| prolyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|169656901|gb|EDS88298.1| prolyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|184211116|gb|EDU08159.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|217396658|gb|EEC36675.1| proline--tRNA ligase [Burkholderia pseudomallei 576]
 gi|242139618|gb|EES26020.1| proline--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|243065285|gb|EES47471.1| proline--tRNA ligase [Burkholderia mallei PRL-20]
 gi|254216717|gb|EET06101.1| proline--tRNA ligase [Burkholderia pseudomallei 1710a]
          Length = 578

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 131/235 (55%), Positives = 169/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  +       DF    E
Sbjct: 181 YVRIFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPT-SDFAANVE 234



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 101/179 (56%), Gaps = 3/179 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPVVADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D KGI+WP+++APF++ L  +        R+A +K+YA 
Sbjct: 442 VMGCYGIGITRILGAAIEQNFDDKGIVWPEAIAPFEVVLCPMGYDRSDAVREAADKLYAD 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       + 
Sbjct: 502 LAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGRRDAEATLLP 560


>gi|295677734|ref|YP_003606258.1| prolyl-tRNA synthetase [Burkholderia sp. CCGE1002]
 gi|295437577|gb|ADG16747.1| prolyl-tRNA synthetase [Burkholderia sp. CCGE1002]
          Length = 578

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 138/277 (49%), Positives = 180/277 (64%), Gaps = 5/277 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIISHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRRQGDFVLGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   EG + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAEGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y+RIF RLGL+   + A++G IGG  SHEF V+ADTGE  +       DF    E  D  
Sbjct: 181 YVRIFTRLGLEFRAVAADNGSIGGSGSHEFHVIADTGEDAIAYC-PSSDFAANVEAADAL 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                  +    +++   P  A  +   E L   L  
Sbjct: 240 PLIAQRAAPAEDMKKTATPGKAKCEAVAELLNIPLER 276



 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 105/192 (54%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M+AT     GK   +
Sbjct: 382 PEPVVADIRNVKKGDPSPDGKGVLDICRGIEVGHVFQLGTKYSEAMNATCLDETGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R++ A IE + D KGIIWP+S+APF++ L  +        R+  +K+YA 
Sbjct: 442 EMGCYGIGVTRILGAAIEQNFDDKGIIWPESIAPFEVVLCPMGYDRSDAVREQADKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       + +
Sbjct: 502 LAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGDRGLKDGKIEYQGRRDAEATLLPV 561

Query: 432 EEVINYASHRFS 443
            +       +  
Sbjct: 562 ADAAQTVIDKVR 573


>gi|237813889|ref|YP_002898340.1| proline--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|237505775|gb|ACQ98093.1| proline--tRNA ligase [Burkholderia pseudomallei MSHR346]
          Length = 578

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 131/235 (55%), Positives = 169/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  +       DF    E
Sbjct: 181 YVRIFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPT-SDFAANVE 234



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 101/179 (56%), Gaps = 3/179 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPVVADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D KGI+WP+++APF++ L  +        R+A +K+YA 
Sbjct: 442 VMGCYGIGITRILGAAIEQNFDDKGIVWPEAIAPFEVVLCPMGYDRSDAVREAADKLYAD 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       + 
Sbjct: 502 LAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGRRDAEATLLP 560


>gi|257139340|ref|ZP_05587602.1| threonyl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 593

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 73/406 (17%), Positives = 139/406 (34%), Gaps = 41/406 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I + + G+  W P G      V   +R   +  G
Sbjct: 226 YLHMLEEAEKRDHRKLGKQLDLF--HIQEEAPGMVFWHPKGWTLWQRVEQYMRRRLDAAG 283

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG + +Y + M    +   +     P +      +F+  ++SY
Sbjct: 284 YLEIKTPMIMDRSLWEASGHWQNYRENMFT-TESEKRDYAIKPMNCPGHVQVFKHGLRSY 342

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F+  DA+ F    + +  +        + +
Sbjct: 343 RDLPLRYAEFGSCHRNEASGALHGLMRVRGFVQDDAHIFCTEDQINSEAIAFN-KLAMSV 401

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E    A+ G      +       +P E         
Sbjct: 402 YEDFGFDRIDIKLSLRPEQRMGSDETWDHAEEGLRNALKACGLEWEELPGE--------- 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    + H   + D+L  + +     +++      G        A +  
Sbjct: 453 --------GAFYGPKIEYH---IKDALGRSWQCGTLQLDMMLPERLG--------AEYVA 493

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+M     ++   H G    W        +++       +   +
Sbjct: 494 EDNSRRRPVMLHRAIVGSMERFLGILIEHHAGAMPAWLAPFHAVVLNIA------ESQAE 547

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
             + +   L K G  V  D   E+I  +     L   P  +++G K
Sbjct: 548 YAQTVVQSLQKQGLRVSADLRNEKISYKIREHTLEKVPYLLVLGDK 593


>gi|126440120|ref|YP_001060493.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 668]
 gi|166980109|sp|A3NDS2|SYP_BURP6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|126219613|gb|ABN83119.1| proline--tRNA ligase [Burkholderia pseudomallei 668]
          Length = 578

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 131/235 (55%), Positives = 169/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y+RIF R+GL+  P+ A++G IGG  SHEF V+ADTGE  +       DF    E
Sbjct: 181 YVRIFTRIGLEFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPT-SDFAANVE 234



 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 101/179 (56%), Gaps = 3/179 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPVVADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D KGI+WP+++APF++ L  +        R+A +K+YA 
Sbjct: 442 VMGCYGIGITRILGAAIEQNFDDKGIVWPEAIAPFEVVLCPMGYDRSDAVREAADKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       + 
Sbjct: 502 LAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGRRDAEATLLP 560


>gi|194335337|ref|YP_002017131.1| threonyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
 gi|238693365|sp|B4SB93|SYT_PELPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194307814|gb|ACF42514.1| threonyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 657

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 150/450 (33%), Gaps = 42/450 (9%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  +  L+E  R D      +L L   +  +   G+  WLP G    + +   ++EE
Sbjct: 237 KLLKEHVARLEEAKRRDHRKLGAELELFM-LSPEVGSGLPIWLPKGAIIRNELETFLKEE 295

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMT 115
           Q + G + +  P + + +L+  SG Y  Y          +D+       +  P +     
Sbjct: 296 QRKRGYLPVYTPHIGNIELYKRSGHYPYYSDSQFPPLTYHDEEGKQEQYLLKPMNCPHHH 355

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSY 174
            I+ S ++SYR+LP    +    +R E      G++R+R F   D++ +    +      
Sbjct: 356 LIYSSKMRSYRDLPLRLTEFGTVYRHEQSGELNGLVRARGFTQDDSHIYCRPDQLVDE-I 414

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIP 233
                    +F  LG   +  R                + D      +  + +  +    
Sbjct: 415 CSAIELTQFVFGTLGFSEVQTRLS--------------MHDPENQAKYGGTAEVWEQAEK 460

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                 D +     I     + Y    D     + D+L    ++    ++          
Sbjct: 461 DVQEAADRMGIDYFIGVGEASFYGPKIDFI---VRDALGRKWQLGTVQVDYVMP------ 511

Query: 294 YSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
                  T+ G+DG+ H    +     G+M     V+     G   +W   V    + + 
Sbjct: 512 --ERFDLTYTGSDGQKHRPVVIHRAPFGSMERFIGVLIEHTAGNFPLWLAPVQAVVLPIA 569

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                 +   D  + ++  L   G     D   E+IG +   A++   P  +++G K   
Sbjct: 570 ------EDVLDYAKSVHQALLAAGIRAELDTRSEKIGKKIRDAEVSKIPCMIVIGQKEQE 623

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             +V ++    G     S+  +I       
Sbjct: 624 SGEVSLRRHRIGDEGRFSVSGLIEKLKTEI 653


>gi|238784905|ref|ZP_04628905.1| Prolyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
 gi|238714222|gb|EEQ06234.1| Prolyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
          Length = 572

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +       D+    E
Sbjct: 181 YSKIFERMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVF-STDSDYAANIE 234



 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DDKHYFGINWERDLPLPQVADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE ++D +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNYDNRGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++Y  L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE
Sbjct: 486 SFRVKELAEELYVTLRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            KHR  G ++ +   E+I++   +  
Sbjct: 546 YKHRRAGEKQMIKTSEIIDFLLSQIK 571


>gi|107021665|ref|YP_619992.1| prolyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
 gi|123072438|sp|Q1BZD6|SYP_BURCA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|105891854|gb|ABF75019.1| prolyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
          Length = 578

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 137/288 (47%), Positives = 183/288 (63%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +       +F    E  +  
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYCPT-SEFAANVEAAEAL 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
               +  +    +E+   P  A  +   E L   L    +      + 
Sbjct: 240 PLIAERAAPAEAMEKVATPGKAKCEAVAELLSIPLERTIKSIVLATDN 287



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 71/179 (39%), Positives = 101/179 (56%), Gaps = 3/179 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPEVADVRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YG+G  R++ A IE + D KGIIWP+S+APF++ L  +      + R+  +K+YA 
Sbjct: 442 LMGCYGVGITRILGAAIEQNFDDKGIIWPESIAPFEVVLCPMGYDRSDMVRETADKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L   G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R       + 
Sbjct: 502 LVAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKIEYQGRRDAEATLLP 560


>gi|311031377|ref|ZP_07709467.1| threonyl-tRNA synthetase [Bacillus sp. m3-13]
          Length = 643

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 160/437 (36%), Gaps = 34/437 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +  +G+  WLP G      +   I +++   G 
Sbjct: 235 LRLLEEAKERDHRKIGKELDLF-FNSQKVGQGLPLWLPKGATIRRVIERYIVDKEVELGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P + S +L+  SG +D Y   M    + +++ ++  P +      ++++ I SYR
Sbjct: 294 DHVYTPVMGSVELYKTSGHWDHYQDGMFPPMEMDNEQLVLRPMNCPHHMMVYKNSIHSYR 353

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++    R E+     G+ R R   + DA+ F    +       ++    L ++
Sbjct: 354 QLPVRIAELGTMHRYEMSGALAGLQRVRGMTLNDAHIFVRPDQIKDEL-KRVVNLVLEVY 412

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
              GL     R                  D    + +   D M            D++  
Sbjct: 413 KDFGLDDYSFRLS--------------YRDPENKEKYFDDDAMWEKAQGMLKEAMDELGL 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    DV   ++  +L + + +S   ++    F    K+      T+ G
Sbjct: 459 DYFEAIDEAAFYGPKLDV---QVRTALGKEETLSTVQLD----FLLPEKFD----LTYVG 507

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGK H   +     G +  +   +    +     +P  +AP ++ +I +        D 
Sbjct: 508 EDGKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSP--DAHFDY 563

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++   L   G  V  D+  E+IG +   A +   P  +++G   + +  V ++     
Sbjct: 564 AKEVQDLLKSKGIRVEMDERNEKIGYKIREAQMQKIPYMLVLGDNEIQERAVNVRKYGEQ 623

Query: 425 IREDMSLEEVINYASHR 441
             E +SLE+ ++     
Sbjct: 624 KSETISLEKFVDDLLKE 640


>gi|254470004|ref|ZP_05083408.1| threonyl-tRNA synthetase [Pseudovibrio sp. JE062]
 gi|211960315|gb|EEA95511.1| threonyl-tRNA synthetase [Pseudovibrio sp. JE062]
          Length = 648

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 149/440 (33%), Gaps = 35/440 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L      +   G+  W   G +   N+   +R     
Sbjct: 230 KAYLHMLEEAEKRDHRKLGREMDLY--HFQEEGPGVVFWHHKGWQLFQNLTNYMRRRLED 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E++ P +    LW  SG ++ Y + M      + +     P +      IF+  +K
Sbjct: 288 -DYQEVNAPQILDKALWETSGHWEWYRENMFATETEDHRVFAIKPMNCPGHVQIFKHGLK 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R E      G+MR R F   DA+ F    + +   +       +
Sbjct: 347 SYRDLPLRMAEFGAVSRYEPSGALHGLMRVRAFTQDDAHVFCTEEQMAAECHKIN-DLIM 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G + I ++  + P     S E    A+    +V             E       
Sbjct: 406 SVYKDFGFEEIVVKLSTRPEKRVGSDEVWDHAEAVMGEVL-----------KEIEANSGG 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I+E   A Y    +     L D++    +     ++      FG        A +
Sbjct: 455 KIKTGILEGEGAFYGPKFEY---TLRDAIGREWQCGTTQVDFNLPERFG--------AFY 503

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             +DG+      +     G++     ++  +  G   +W         ++          
Sbjct: 504 VDSDGEKKQPVMIHRAICGSLERFLGILIENFAGHFPLWLAPQHFVVAAIT------SDA 557

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  ++++A L K G     D   E+I  +         P+ + VG +   +  V I+  
Sbjct: 558 DDYAKEVHAALKKAGLRGELDLRNEKINYKVREHSHAKIPVIIAVGKREAEEKTVSIRRL 617

Query: 422 LTGIREDMSLEEVINYASHR 441
            +  +  M+L+E +      
Sbjct: 618 GSRNQTAMTLDEAVASLRDE 637


>gi|149909734|ref|ZP_01898386.1| prolyl-tRNA synthetase [Moritella sp. PE36]
 gi|149807248|gb|EDM67203.1| prolyl-tRNA synthetase [Moritella sp. PE36]
          Length = 573

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 125/237 (52%), Positives = 166/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GM+ + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRSSNYLLSTLKETPNDAEVISHQLMLRAGMVRRLASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E  +P +Q ADLW E+GR D +G E+LR+ DR++++ + GPTHEEV+TDI R 
Sbjct: 61  MDKAGAVETLMPMVQPADLWQETGRIDKFGPELLRINDRHNRSFVLGPTHEEVITDIARK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF ++ E    +YNKM  +
Sbjct: 121 EINSYKQLPLTLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHISDECLNDTYNKMHTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF R+GL+  P+ A++G IGG +SHEF VLA++GE  +  S    D+    E  
Sbjct: 181 YCNIFERIGLEYRPVLADTGSIGGAVSHEFHVLAESGEDDIVFSD-GSDYAANIEKA 236



 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 71/198 (35%), Positives = 107/198 (54%), Gaps = 1/198 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +     T    A      E       +      RGIEVGHIF  GT+Y+  M A      
Sbjct: 376 NWDRDITEYTVADIRNVVEGEASPCGKGTLSIKRGIEVGHIFQLGTQYAEAMKAGVLNMQ 435

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDAC 365
           GK   + MG YGIG  R+VAA IE +HD  GIIW +S+AP+K+S+I +        ++A 
Sbjct: 436 GKQQIMTMGCYGIGVSRIVAAAIEQNHDENGIIWNESIAPYKVSIIPMNMHKSADVKEAA 495

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           EKIYA L   G +VF+DD  E+ G  FA ++L+G P  +I+G + + +  VE K RLTG 
Sbjct: 496 EKIYADLQAAGIEVFFDDRKERPGVMFADSELIGIPHNIIIGDRSLKNGLVEHKLRLTGD 555

Query: 426 REDMSLEEVINYASHRFS 443
           + ++++ +++ +     +
Sbjct: 556 KTEVAVADIVAHVKSLLA 573


>gi|77919019|ref|YP_356834.1| threonyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
 gi|123770467|sp|Q3A4P3|SYT_PELCD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77545102|gb|ABA88664.1| Ser-tRNA(Thr) hydrolase [Pelobacter carbinolicus DSM 2380]
          Length = 638

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 154/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
            Y   + +   RD      +L L +    +   G+  W P G      +    R E  R 
Sbjct: 233 TYLNKLEEARKRDHRRIGRELDLFS-FSEEAGAGLVIWHPKGALLRTLLEDFERREHLRR 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +   DLW  SG +D+Y + M    D + +     P +      I+++  +S
Sbjct: 292 GYDIVMGPQILRTDLWKTSGHFDNYRENM-YFTDVDGQGYGIKPMNCLAHMLIYKARQRS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  ++++    R E      G++R R F   DA+    TP+       ++      
Sbjct: 351 YRDLPLRYFELGTVHRHEKSGVLHGLLRVRGFTQDDAHIIC-TPDQLDEEIKRVLEFVRD 409

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G                   E+ +   T   +   S    +    +      D+ 
Sbjct: 410 VMAIFG------------------FEYEIEISTRPEKSIGSDADWERATGALMNALKDLE 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
             + + E   A Y    D+   KL D+L    + +    +    F    ++      T+ 
Sbjct: 452 LPHDVNEGDGAFYGPKIDI---KLKDALDRRWQCATIQCD----FTLPERFD----LTYV 500

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG+ H    +    +GA+     V+   + G   +W   V    I++           
Sbjct: 501 GKDGEKHRPVMLHRVILGAIERFIGVLIEHYAGNFPLWLAPVQAVVINVT------DNQA 554

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  + +   L   G  V  D   E++G +   A +   P  ++VG   +SD  V  + R 
Sbjct: 555 DYAKSVSDALRAAGVRVQCDLRNEKLGFKIREAQVDKIPYMLVVGDTEMSDGTVAPRFRS 614

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E MS E+   +        R
Sbjct: 615 GKNLEPMSPEDFARFVQEECDQYR 638


>gi|78186013|ref|YP_374056.1| threonyl-tRNA synthetase, class IIA [Chlorobium luteolum DSM 273]
 gi|78165915|gb|ABB23013.1| Ser-tRNA(Thr) hydrolase [Chlorobium luteolum DSM 273]
          Length = 677

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 149/451 (33%), Gaps = 42/451 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L   +  +   G+  WLP G      +   +++E
Sbjct: 257 KLLKEHLERLEEARKRDHRRLGQELKLFM-LSPEIGSGLPVWLPKGAIIRQELETFLKDE 315

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMT 115
           Q R G + +  P + + +L+  SG Y  Y          +D+       +  P +     
Sbjct: 316 QRRRGYLPVYTPHIGNIELYKRSGHYPYYSDSQFPPLTYHDEDGKQEQYLLKPMNCPHHH 375

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSY 174
            I+ S ++SYR+LP    +    +R E      G++R+R F   D++ +    +      
Sbjct: 376 LIYSSEMRSYRDLPIRLTEFGTVYRHEQSGELNGLVRARGFTQDDSHIYCRPDQLVDE-I 434

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIP 233
                    +F  LG  ++  R                + D      +  + +  +    
Sbjct: 435 CNAIDLTQFVFRTLGFDAVETRLS--------------MHDPENQTKYGGTPEVWEQAEK 480

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                 D +     I     + Y    D     + D+L    ++    ++          
Sbjct: 481 DVKEAADRMGIKYFIGIGEASFYGPKIDFI---VRDALGRKWQLGTVQVDYVMP------ 531

Query: 294 YSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
                  T+ G DG+ H    +     G+M     V+     G   +W   V    + + 
Sbjct: 532 --ERFDLTYVGNDGQKHRPVVIHRAPFGSMERFIGVLIEHTAGNFPLWLAPVQAVVLPIA 589

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                 +   D    +   +   G     D   E+IG +   ++L   P  V+VG K   
Sbjct: 590 ------EDVHDYAAGVRNAMLAAGIRTELDLRSEKIGKKIRESELSKIPYMVVVGQKEEE 643

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              V ++    G    +S++++I        
Sbjct: 644 KGAVSLRRHRKGDEGTLSIQDMIERLREEID 674


>gi|116688611|ref|YP_834234.1| prolyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
 gi|170731910|ref|YP_001763857.1| prolyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
 gi|152016591|sp|A0K4B4|SYP_BURCH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226699124|sp|B1JVA5|SYP_BURCC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116646700|gb|ABK07341.1| prolyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
 gi|169815152|gb|ACA89735.1| prolyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
          Length = 578

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 137/288 (47%), Positives = 183/288 (63%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +       +F    E  +  
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYCPT-SEFAANVEAAEAL 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
               +  +    +E+   P  A  +   E L   L    +      + 
Sbjct: 240 PLIAERAAPAEAMEKVATPGKAKCEAVAELLSIPLERTIKSIVLATDN 287



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 71/179 (39%), Positives = 101/179 (56%), Gaps = 3/179 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPEVADVRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YG+G  R++ A IE + D KGIIWP+S+APF++ L  +      + R+  +K+YA 
Sbjct: 442 LMGCYGVGITRILGAAIEQNFDDKGIIWPESIAPFEVVLCPMGYDRSDMVRETADKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L   G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R       + 
Sbjct: 502 LVAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKIEYQGRRDAEATLLP 560


>gi|303232046|ref|ZP_07318749.1| proline--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513152|gb|EFL55191.1| proline--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
          Length = 572

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 122/290 (42%), Positives = 177/290 (61%), Gaps = 4/290 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+E P DA++ S +LMLR G + + + G+YS+LPLG +++  + AIIREE
Sbjct: 1   MLASKLYAPTLREVPSDADVVSQQLMLRAGFMRKVANGLYSFLPLGWRSIKKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRSGAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDVEYCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKD YSFD+    +  SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDGYSFDIDDAAADVSYKNMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL   P+ A+SG IGG  +HEF+ +A+ GE  +       D+    E     
Sbjct: 181 YSRIFTRCGLTFRPVEADSGAIGGSNTHEFMAIAEAGEADI-IHCSACDYAANIEIGKPG 239

Query: 241 DIISLNSIVEQWTA---PYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            +      +++      P+A+T +   E L   L +  +     IE   I
Sbjct: 240 IMKQAEEALKELEVVDTPHASTIEAVAEMLNLPLEKTIKAVVYAIEDKVI 289



 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 65/177 (36%), Positives = 98/177 (55%), Gaps = 2/177 (1%)

Query: 269 DSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  PE       ++GIEVG +F  GTKYS  + AT+   +G+ + + MG YGIG  R +A
Sbjct: 394 DVCPECHSPLEYSKGIEVGQVFKLGTKYSESLQATYLDQNGRPNAMVMGCYGIGVSRTLA 453

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A IE  HD  GI+WP ++APF++ ++ I A D+        IY  L     DV  DD  +
Sbjct: 454 AAIEQYHDENGIVWPRAIAPFEVVIVPINAKDEALMSTSTSIYDTLLNNKVDVLLDDRKD 513

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + G +F  ADL+G+PL++ V    +  ++VEI+ R TG   +  ++EV +      S
Sbjct: 514 RAGVKFKDADLIGYPLRITVSKNTLESNEVEIRVRKTGEAINCPIDEVSSKVQELLS 570


>gi|172036410|ref|YP_001802911.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171697864|gb|ACB50845.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 666

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 148/443 (33%), Gaps = 38/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y     +   RD      +L L +  I +    G+  W P G      +    R      
Sbjct: 258 YLTQKEEAQRRDHRKLGQQLKLFS--IQEDAGGGLVFWHPRGAMMRYLIEDYWRNAHLED 315

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + + DLW  SG +D Y + M        +     P +       ++  + S
Sbjct: 316 GYQFLYTPHVANLDLWKTSGHWDFYRENMFEAMAVEHQTYQIKPMNCPFHVLTYKDDLHS 375

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR  P  + ++   +R E      G+MR R F   DA+ F L  + +      +     +
Sbjct: 376 YREFPLKWAELGTVYRYEKSGVLHGLMRVRGFTQDDAHIFCLPEQIADE-ILGVLNLTEK 434

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G     +   + P                      S         +     ++  
Sbjct: 435 ILSDFGFTDYEVNLSTRPEKS-----------------VGSDQVWQLATEALIKALNNKQ 477

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y    D+   K+ D++    + S   ++      FG +Y         
Sbjct: 478 WNYLEDRGGGAFYGPKIDI---KIKDAIGRLWQCSTIQVDFNLPERFGMEY-------VA 527

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               +   + +     G++     ++    +     +P  +AP ++ L+ +       +D
Sbjct: 528 ADGSRQQPIMIHRAIFGSLERFFGILI---ENYAGDFPLWLAPIQLRLLPV---SDEQQD 581

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +  RL K G  V  D  GE++G Q  +++L   P+  IVG + V    + I+ R  
Sbjct: 582 YAKTVAIRLKKAGYRVEVDTSGERLGKQIRLSELEKIPVVAIVGKREVESQTLSIRTRQG 641

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
           G    +++ ++        +N +
Sbjct: 642 GDLGTITVADLRERFKIAITNKK 664


>gi|322831614|ref|YP_004211641.1| prolyl-tRNA synthetase [Rahnella sp. Y9602]
 gi|321166815|gb|ADW72514.1| prolyl-tRNA synthetase [Rahnella sp. Y9602]
          Length = 572

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   AIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNANAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF+R+GL    + A++G IGG  SHEF VLA +GE  V  S    DF    E
Sbjct: 181 YSQIFNRMGLDFRAVLADTGSIGGSASHEFQVLAQSGEDDVVFSDS-SDFAANIE 234



 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 77/193 (39%), Positives = 115/193 (59%), Gaps = 3/193 (1%)

Query: 253 TAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A     +D+ N    D  P+ +   V  RGIEVGHIF  GTKYS  M+AT +G DG++ 
Sbjct: 378 DAALPEVADIRNVVAGDPSPDGQGTLVIKRGIEVGHIFQLGTKYSEAMNATVQGEDGRNQ 437

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIY 369
            + MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     +DA E +Y
Sbjct: 438 LMTMGCYGIGVTRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVKDAAEALY 497

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L   G DV  DD  E+ G  FA  +L+G P QV++G + +   ++E K+R TG ++ +
Sbjct: 498 KELRSHGIDVILDDRKERPGVMFADMELIGVPHQVVIGDRNLDAEELEYKNRRTGEKQMI 557

Query: 430 SLEEVINYASHRF 442
              +++ Y   + 
Sbjct: 558 KQSDIVEYLLSQI 570


>gi|194017903|ref|ZP_03056511.1| threonyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194010369|gb|EDW19943.1| threonyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 642

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 166/445 (37%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   I + + RD      +L L   M  + + G+  +LP GQ   + + A  RE +N
Sbjct: 230 LANYLHFIEEASKRDHRKLGKQLSLF--MFSEEAPGMPFYLPKGQIVRNELMAFSREVRN 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+S P + + +LW +SG +D Y + M   ++ +  +    P +      +F++++
Sbjct: 288 KAQYEEVSTPFMMNQELWEKSGHWDHYHENM-YFSEVDHTSFALKPMNCPGHMLMFKNNL 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    +     R E      G+ R R F   DA+ F L  +  +    ++F   
Sbjct: 347 YSYRDLPIRMAEFGQVHRHEFSGALNGLFRVRTFCQDDAHIF-LREDQIEAEIKRIFQLV 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G                   E+ V   T   +        D    +     D 
Sbjct: 406 DHVYRTFG------------------FEYSVELSTRPEKALGDDAIWDISESALKNVLDR 447

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     + E   A Y    D H   + D+L  + + +   ++    F    K+      T
Sbjct: 448 LKVDYQLNEGDGAFYGPKIDFH---IKDALQRSHQCATIQLD----FQMPEKFD----LT 496

Query: 302 FKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +     +    V + S   G++     ++     G   +W   V    I +  +      
Sbjct: 497 YINEKNEKVRPVVIHSAIFGSLDRFFGILIEHFAGAFPLWLAPVQVQIIPVTTV------ 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D C ++  +L K+G  V  D+  E++G +   A +   P   ++G   + D  + I+ 
Sbjct: 551 HLDHCLEVQQQLRKIGIRVTIDERDEKLGYKMREAQMQKIPYIAVIGDTEMQDKSLNIRQ 610

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                 + + +E+  + A  +  N 
Sbjct: 611 HGEKASKQLFIEDFKHLAVQQIQNR 635


>gi|227550587|ref|ZP_03980636.1| threonine--tRNA ligase [Enterococcus faecium TX1330]
 gi|257888612|ref|ZP_05668265.1| threonyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257897010|ref|ZP_05676663.1| threonyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|257898951|ref|ZP_05678604.1| threonyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|293378702|ref|ZP_06624860.1| threonine--tRNA ligase [Enterococcus faecium PC4.1]
 gi|293571021|ref|ZP_06682064.1| threonyl-tRNA synthetase [Enterococcus faecium E980]
 gi|227180295|gb|EEI61267.1| threonine--tRNA ligase [Enterococcus faecium TX1330]
 gi|257824666|gb|EEV51598.1| threonyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257833575|gb|EEV59996.1| threonyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|257836863|gb|EEV61937.1| threonyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|291608947|gb|EFF38226.1| threonyl-tRNA synthetase [Enterococcus faecium E980]
 gi|292642630|gb|EFF60782.1| threonine--tRNA ligase [Enterococcus faecium PC4.1]
          Length = 647

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 161/448 (35%), Gaps = 34/448 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIRE 59
           +  K ++ + +E   RD      +L L   M+  +   G+  WLP G      +   I +
Sbjct: 225 KALKEYIRLREEAKERDHRKLGKELDLF--MVSPEVGSGLPFWLPKGATIRRTIERYIVD 282

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIF 118
           ++   G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++
Sbjct: 283 KEVSLGYQHVYTPIMGDVELYKTSGHWDHYQEDMFPPMDMGDGEMLVLRPMNCPHHMMVY 342

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           ++ I SYR LP    ++ +  R E       ++    +  +     + P+  K  + +  
Sbjct: 343 KNAIHSYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTL 402

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NT 237
              + ++    +     R                  D   T  +   D M     +    
Sbjct: 403 ELMVAVYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKA 448

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D++       E   A Y    DV   ++  +L   + +S   ++    F    ++   
Sbjct: 449 AMDELELDYFEAEGEAAFYGPKLDV---QVKTALGTEETLSTIQLD----FLLPERFD-- 499

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              T+ G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +   
Sbjct: 500 --LTYVGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV- 555

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V 
Sbjct: 556 -DAHGDYAYEIKERLQMKGLRVEVDDRNEKMGYKIRASQTQKIPYQLVVGDKELEDATVN 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++   +       L   I+       N 
Sbjct: 615 VRRYGSKETAVEDLNIFIDAMEAEVKNY 642


>gi|161525965|ref|YP_001580977.1| prolyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189349316|ref|YP_001944944.1| prolyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|221202408|ref|ZP_03575440.1| prolyl-tRNA synthetase [Burkholderia multivorans CGD2M]
 gi|221208132|ref|ZP_03581137.1| prolyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221213248|ref|ZP_03586223.1| prolyl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|226699126|sp|A9AI56|SYP_BURM1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160343394|gb|ABX16480.1| prolyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189333338|dbj|BAG42408.1| prolyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|221166700|gb|EED99171.1| prolyl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|221172035|gb|EEE04477.1| prolyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221177685|gb|EEE10100.1| prolyl-tRNA synthetase [Burkholderia multivorans CGD2M]
          Length = 578

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 137/287 (47%), Positives = 180/287 (62%), Gaps = 3/287 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAVELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   EG + SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAEGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +                   
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYCPSSEFAANVEAAEALP 240

Query: 241 DIISLNSIVEQWTA---PYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            I    +  E  T    P  A  +   E L   L    +      + 
Sbjct: 241 LIAERAAPAEALTKVATPGKAKCEAVAELLNIPLERTIKSIVLATDN 287



 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 74/192 (38%), Positives = 104/192 (54%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPEVADVRNVKKGDPSPDGKGAIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D KGIIWP+S+APF++ L  +        R+A +K+YA 
Sbjct: 442 LMGCYGIGVTRILGAAIEQNFDDKGIIWPESIAPFEVVLCPMGYDRSDAVREAADKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       +  
Sbjct: 502 LTAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGRRDTEATLLPA 561

Query: 432 EEVINYASHRFS 443
            E     + +  
Sbjct: 562 GEAAATVAEKVR 573


>gi|327392821|dbj|BAK10243.1| Prolyl-tRNA synthetase ProS [Pantoea ananatis AJ13355]
          Length = 572

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTQKETPSDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR+ADR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRVADRHERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF+R+GL    ++A++G IGG  SHEF VLA +GE  V       DF    E
Sbjct: 181 YSQIFNRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIF-STASDFAANIE 234



 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 69/193 (35%), Positives = 112/193 (58%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M A+ +G DG++  +
Sbjct: 380 PMAQVADLRNVVEGDLSPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKASVQGEDGRNQIM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWP ++APF+++++ +        ++  E++Y  
Sbjct: 440 TMGCYGIGITRVVAAAIEQNHDDRGIIWPAALAPFEVAILPMNMQKSFRVKELAEELYNT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V  DD  E+ G  FA  +L+G P  +++G + + + ++E K R  G ++ +  
Sbjct: 500 LRAKGVEVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNQEIEYKARRAGEKQMIKQ 559

Query: 432 EEVINYASHRFSN 444
           +E++ +  +  + 
Sbjct: 560 DEIVEFLLNALNK 572


>gi|226327022|ref|ZP_03802540.1| hypothetical protein PROPEN_00883 [Proteus penneri ATCC 35198]
 gi|225204240|gb|EEG86594.1| hypothetical protein PROPEN_00883 [Proteus penneri ATCC 35198]
          Length = 571

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 122/235 (51%), Positives = 167/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAEI SH+LMLR GMI + + G+Y W+P G + L  +  I+REE
Sbjct: 1   MRTSHYLLSTLKETPADAEIVSHQLMLRAGMIRKLASGLYDWMPTGVRVLRKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G++E+S+P +Q ADLW+ESGR++ YG E+LR +DR ++  + GPTHEEV+TDI R+
Sbjct: 61  MDNAGSLEISMPVVQPADLWLESGRWEQYGPELLRFSDRGERPFVLGPTHEEVVTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF ++ E  + +Y++M+ +
Sbjct: 121 EITSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHISQESLQETYDRMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL   P+ A++G IGG+ SHEF VLAD+GE  +       D+    E
Sbjct: 181 YSKIFSRIGLDFRPVLADTGSIGGNASHEFQVLADSGEDDIVF-STGSDYAANIE 234



 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/192 (35%), Positives = 116/192 (60%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  + AT +  +G +  V
Sbjct: 380 PVAEIADIRNVVEGDQSPDGKGTLLIKRGIEVGHIFQLGTKYSEALKATVQNEEGHNQIV 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYAR 371
            MG YGIG  R+VAA IE +HD +GIIWPD++APF+++++ +  H     ++  +++Y  
Sbjct: 440 TMGCYGIGITRIVAAAIEQNHDARGIIWPDAIAPFQVAILPMNMHRSYRVKEVADRLYNE 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV +DD  E+ G  FA  +L+G P  +++G + + ++++E K R +  +  +++
Sbjct: 500 LRAQGIDVLFDDRKERPGVMFADMELIGIPHTIVIGDRNLDNNQIEYKARRSDDKSLVNV 559

Query: 432 EEVINYASHRFS 443
           ++V+ +   + +
Sbjct: 560 DDVVAFIKEQLA 571


>gi|51245016|ref|YP_064900.1| prolyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
 gi|81826866|sp|Q6AP31|SYP_DESPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|50876053|emb|CAG35893.1| probable prolyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
          Length = 570

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 132/289 (45%), Positives = 186/289 (64%), Gaps = 5/289 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P  +E P +AE+ASH+LMLR G + + S G+YS+LP G  A+  V  I+REE
Sbjct: 1   MRYSQSFIPTKKETPAEAEVASHQLMLRAGFMRKLSSGVYSYLPYGLAAIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA EM +P +Q ADLW E+GRY+ YG E+LR  DRN++    GPTHEEV+TDI R+
Sbjct: 61  MNRAGAQEMLMPMVQPADLWKETGRYEKYGPELLRFFDRNNRESCLGPTHEEVITDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+  E +  SY+KMF +
Sbjct: 121 ELSSYRDLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDVDDEQANLSYDKMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL+  P++A+SG IGG  SHEF+VLA TGE  +   KD  ++    E  +  
Sbjct: 181 YKRIFTRCGLQFRPVQADSGAIGGSHSHEFMVLAKTGEDTIVVCKDC-EYAANMEKAEVK 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
            + + N              +   ++  +++ +  +++ + +    +F 
Sbjct: 240 LVATEN----DEALAELEKIETPGKRKVNAVCDFLQITPQQLVKTMVFE 284



 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 71/202 (35%), Positives = 106/202 (52%), Gaps = 2/202 (0%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLP 297
           +    L ++  +     +A +D+      D  P    +     GIEVGH+F  GT YS  
Sbjct: 360 EKNFHLKNVNIERDCTVSAVADLRQISTDDPCPRCGGRLELTEGIEVGHVFKLGTGYSES 419

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+A F+   G +    MG YGIG  RVVAA IE +HD  GII+P  +AP+ ++++N+   
Sbjct: 420 MNARFQDGTGDEKPFVMGCYGIGVSRVVAAAIEQNHDKDGIIFPVPLAPYTVTVLNLGLK 479

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D     A EK+YA L   G  V  DD  E+ G++F  ADLLG P ++ VG     +  VE
Sbjct: 480 DPEITAAAEKLYAELQAAGLSVLLDDRDERPGAKFKDADLLGIPYRLTVGKGLAKNGMVE 539

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
           ++ R  G  E+M+ E   ++ +
Sbjct: 540 VRRRRDGHTEEMTPEVAADFLA 561


>gi|317490123|ref|ZP_07948612.1| prolyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|325833438|ref|ZP_08165887.1| proline--tRNA ligase [Eggerthella sp. HGA1]
 gi|316910828|gb|EFV32448.1| prolyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|325485362|gb|EGC87831.1| proline--tRNA ligase [Eggerthella sp. HGA1]
          Length = 584

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 109/234 (46%), Positives = 161/234 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+E+P DAEIASH+L+LR G I + + G+Y++LPLG++ L  V  I+REE
Sbjct: 7   MRMSQLYAPTLKEDPADAEIASHRLLLRAGFIRKTASGVYTFLPLGKRVLAKVENIVREE 66

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P LQ  +LW ESGR++ YG E++RL DR+D+    GPTHEE++T + R+
Sbjct: 67  MDGIGAQEIMMPALQPGELWHESGRWNDYGPELMRLVDRHDREFCLGPTHEELITSLVRN 126

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP + YQIQ+KFRDE+RPRFG++RSREF+MKDAYSF    E  + +Y+ M  +
Sbjct: 127 ELRSYKELPLSLYQIQVKFRDEIRPRFGLLRSREFIMKDAYSFHADQESLQKTYDDMSEA 186

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y RI  R+G+   P+ A+ G IGG ++ EF+ LA+ GE ++            +
Sbjct: 187 YGRICDRMGMDYRPVEADPGQIGGSVTCEFMALAEAGEAELVHCTCGYAANTEA 240



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 74/184 (40%), Positives = 107/184 (58%), Gaps = 2/184 (1%)

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+   +  DS P         RGIEV  +F  G KYS  M ATF   DG +    MG
Sbjct: 380 EWADLCIVQPGDSCPSCGLPLDGARGIEVSQVFQLGDKYSKAMGATFMAEDGSEQPFLMG 439

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG+G  R +AA++E  +D  GI+WP +VAP  + +I +   D   + A EK+ + L+K+
Sbjct: 440 CYGVGISRTMAAIVEQHNDENGIMWPLTVAPAHVCVIPLTVGDDEVQPAAEKLASDLAKL 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G +FA ADL+G+PLQVIVG + +++ KVEIK R TG R D+ L  + 
Sbjct: 500 GLEVVIDDRKERAGVKFADADLIGWPLQVIVGKRGLAEQKVEIKRRSTGARRDIPLAALT 559

Query: 436 NYAS 439
           +  +
Sbjct: 560 DALA 563


>gi|307564422|ref|ZP_07626963.1| threonine--tRNA ligase [Prevotella amnii CRIS 21A-A]
 gi|307346782|gb|EFN92078.1| threonine--tRNA ligase [Prevotella amnii CRIS 21A-A]
          Length = 650

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 150/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y L + +   RD      ++ L      +  KG+  WLP G +    +  ++R+     
Sbjct: 232 EYLLMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQDMLRKLLKPY 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + S +L++ SG Y  YGK+  +       D+  +  P +     +++    
Sbjct: 291 NYQEVITPGIGSKNLYITSGHYAHYGKDAFQPIQTPEEDEEYMLKPMNCPHHCEVYAYKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    FR E      G+ R R F   DA+ F   P+  K  +       
Sbjct: 351 RSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRNFTQDDAHIFVR-PDQVKAEFENNIDII 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L++F   G ++   +                  D  +   +   D +             
Sbjct: 410 LKVFKTFGFENYEAQISLR--------------DPEDKDKYIGDDEVWNESEQAIKQACK 455

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++      F          
Sbjct: 456 EKGLKATVELGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLPQRF--------HL 504

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D        +     G++    AV+     G   +W           + I    +
Sbjct: 505 EYTAEDNTKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW------LTPDQVAILPVSE 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+  +L         DD  E++G +    +L   P  V+VG K  ++  V ++
Sbjct: 559 KYNDYARKVKQQLDASDVRALIDDRNEKVGRKIRDNELKRIPYMVVVGEKEAAEGLVAMR 618

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M ++  I       + 
Sbjct: 619 KQGGGEQSTMPVKAFIERVKAEVAE 643


>gi|291616370|ref|YP_003519112.1| ProS [Pantoea ananatis LMG 20103]
 gi|291151400|gb|ADD75984.1| ProS [Pantoea ananatis LMG 20103]
          Length = 572

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTTQYLLSTQKETPSDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR+ADR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRVADRHERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF+R+GL    ++A++G IGG  SHEF VLA +GE  V       DF    E
Sbjct: 181 YSQIFNRMGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVIF-STASDFAANIE 234



 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 69/193 (35%), Positives = 112/193 (58%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M A+ +G DG++  +
Sbjct: 380 PMAQVADLRNVVEGDLSPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKASVQGEDGRNQIM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWP ++APF+++++ +        ++  E++Y  
Sbjct: 440 TMGCYGIGITRVVAAAIEQNHDDRGIIWPAALAPFEVAILPMNMQKSFRVKELAEELYNT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V  DD  E+ G  FA  +L+G P  +++G + + + ++E K R  G ++ +  
Sbjct: 500 LRAKGVEVILDDRKERPGVMFADMELIGVPHTIVIGDRNLDNQEIEYKARRAGEKQMIKQ 559

Query: 432 EEVINYASHRFSN 444
           +E++ +  +  + 
Sbjct: 560 DEIVEFLLNALNK 572


>gi|116333673|ref|YP_795200.1| threonyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
 gi|122269640|sp|Q03RK3|SYT_LACBA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116099020|gb|ABJ64169.1| Threonyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
          Length = 647

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 153/444 (34%), Gaps = 38/444 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
                +   RD  +  ++L L    +  +   G+  W+P G      +   I +++   G
Sbjct: 232 LARRQEARERDHRVIGNQLDLF--FVDPKVGAGLPYWMPNGATIRRTIERYIIDKEVSNG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKS 124
              +  P L + DL+ +SG +  Y ++M    D  D  M    P +      ++  HI+S
Sbjct: 290 YQHVYTPVLANLDLYKQSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYNHHIRS 349

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    ++ +  R E      G+ R RE  + D ++F    +     +  +    ++
Sbjct: 350 YRELPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVAPEQIQDE-FKSILDLMVK 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +K    R                  D   T+ +   D M     +      DD+
Sbjct: 409 VYADFDIKDYTFRLS--------------YRDPKNTEKYFDDDEMWNNAQAMLKGAMDDL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV  +    +L   + +S   ++    F    ++ L     +
Sbjct: 455 GLPYVEAEGEAAFYGPKLDVQTKT---ALGNEETLSTIQLD----FMLPERFDLH----Y 503

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG++H    +    +  M    A +   + G    W             I   ++  
Sbjct: 504 VGADGEEHRPVMIHRGLVSTMERFTAYLTEIYKGAFPTWLAPKQVT-----IIPVSEEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +K+ A L      V  D  GE++G     A     P  ++VG   +S+  V ++  
Sbjct: 559 GAYADKLAAELKAADIRVNVDKRGEKMGYLIRDAQTHKIPYTLVVGEDEMSNGSVSVRKY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS +  +       ++ 
Sbjct: 619 GENQTTSMSSDAFVKEILADIASY 642


>gi|296160514|ref|ZP_06843330.1| prolyl-tRNA synthetase [Burkholderia sp. Ch1-1]
 gi|295889263|gb|EFG69065.1| prolyl-tRNA synthetase [Burkholderia sp. Ch1-1]
          Length = 578

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 135/288 (46%), Positives = 182/288 (63%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQSDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQ+Q KFRDE+RPRFGVMR REF+MKDAYSFD   +G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQVQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDMDGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-- 238
           Y+RIF RLGL    + A++G IGG  SHEF V+A+TGE  +       DF    E  +  
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIAETGEDAIAYCPT-SDFAANVEAAEAL 239

Query: 239 --FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
               +  +    +++   P  A  +   E L   L    +      E 
Sbjct: 240 PLHAERAAPAEEMKKTATPGKAKCEAVAELLNIPLERTIKSIILATEN 287



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/192 (37%), Positives = 108/192 (56%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M+AT     GK   +
Sbjct: 382 PEPVVADIRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMNATCLDETGKPRPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R++ A IE + D +GIIWP+S+APF++ L  +     +  R+A +K+YA 
Sbjct: 442 EMGCYGIGVTRILGAAIEQNFDDRGIIWPESIAPFEVVLCPMGYDRSEAVREAADKLYAT 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       + +
Sbjct: 502 LVEAGIDVILDDRGERPGVMFADWELIGVPHRLVIGDRGLKDGKLEYQGRRDAEATLLPV 561

Query: 432 EEVINYASHRFS 443
           E+       +  
Sbjct: 562 EDAAQTVIGKVR 573


>gi|262281159|ref|ZP_06058941.1| prolyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
 gi|262257390|gb|EEY76126.1| prolyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
          Length = 571

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHANPFVLGPTHEEVITDMARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +       D+    E
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLASSGEDDIAF-STESDYAANVE 234



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 104/192 (54%), Gaps = 3/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A      D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G DGK
Sbjct: 379 ERDAQITEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGEDGK 438

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              V MG YGIG  RVVAA IE ++D KGI+WP ++APF+I+++ + A       +A E 
Sbjct: 439 PFTVTMGCYGIGVTRVVAAAIEQNYDDKGIMWPQAIAPFEIAIVPMNAHKSPRTLEAAES 498

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA L   G D+  DD  E+ G +F+  +L+G P ++++G K +     E K R      
Sbjct: 499 LYAELQAQGFDILLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDAEAS 558

Query: 428 DMSLEEVINYAS 439
           +++ EE++   +
Sbjct: 559 NLTKEELLAKLA 570


>gi|89101224|ref|ZP_01174050.1| threonyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89084053|gb|EAR63228.1| threonyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 408

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 165/434 (38%), Gaps = 32/434 (7%)

Query: 9   PILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            +L+E   RD      +L L      +  +G+  WLP G      V   I +++ R G  
Sbjct: 1   RLLEEAKERDHRKIGKELDLFMT-SQKVGQGLPMWLPKGATIRRIVERYIVDKEQRLGYE 59

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            +  P + + +L+  SG +D Y ++M  + + +++ ++  P +      I+++ I SYR 
Sbjct: 60  HVYTPVMANVELYKTSGHWDHYQEDMFPVMEMDNEELVLRPMNCPHHMMIYKNSIHSYRE 119

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP    ++    R E+      ++    +  +     + P+  K  + ++    L ++  
Sbjct: 120 LPIRIAELGTMHRYEMSGALSGLQRVRGMTLNDAHIFVRPDQIKEEFKRVVHLILEVYKD 179

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISLN 246
             ++    R                  D  +T+ + + D M     S      D++    
Sbjct: 180 FNIEDYSFRLS--------------YRDPQDTEKYFNDDEMWEKAQSMLKEAMDELGLDY 225

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV    +  +L + + +S   ++    F    ++      ++ G D
Sbjct: 226 YEAEGEAAFYGPKLDVM---VKTALGKEETLSTAQLD----FLLPERFD----LSYVGED 274

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK H   +     G +  +   +    +     +P  +AP ++ +I +        D  +
Sbjct: 275 GKQHRPVVIHR--GVVSTMERFVAFLIEEYKGAFPTWLAPVQVQVIPVSP--DAHFDYAK 330

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L   G  V  D   E+IG +   A +   P  +++G K VSD+ V ++       
Sbjct: 331 KVQEELQAQGYRVELDARNEKIGYKIREAQMQKIPYMLVLGDKEVSDNAVNVRKYGEQKS 390

Query: 427 EDMSLEEVINYASH 440
           E MS +   +    
Sbjct: 391 ETMSFDVFKDALKE 404


>gi|332526531|ref|ZP_08402643.1| prolyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
 gi|332110799|gb|EGJ10976.1| prolyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 582

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 120/235 (51%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G + +  V AIIREE
Sbjct: 1   MKASQTFISTLKEAPADAEIVSHKLMMRAGMIKRLGAGIYNYMPMGLRVIRKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW+E+GR+ +YG E+LR+ DR+D+  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELLMPVVQPAELWMETGRFQAYGPELLRVKDRHDRDFVIQPTSEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP TFY +Q KFRDE RPRFGVMR REF MKDAYSFD     +  SY+ M+ +
Sbjct: 121 ELRSYKQLPRTFYHVQTKFRDERRPRFGVMRGREFTMKDAYSFDRDKASALKSYDTMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL    + A++G IGGD SHEF V+ADTGE  +       D+    E
Sbjct: 181 YCAIFDRFGLTYRAVAADTGAIGGDASHEFQVIADTGEDAIVYCPT-SDYAANIE 234



 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 107/189 (56%), Gaps = 4/189 (2%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTK-YSLPMSATFKGADGKDHYVQMG 315
            +D+ N    D  P+ + V    RGIEVGH+FY GTK YS PM AT+   +GK    +MG
Sbjct: 393 VADIRNVVAGDPSPDGQGVLAIQRGIEVGHVFYLGTKKYSEPMGATYLDENGKPQPFEMG 452

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSK 374
            YGIG  R++ A IE +HD +GIIWPD++APF +++  I        + A ++++  L+ 
Sbjct: 453 CYGIGVTRILGAAIEQNHDERGIIWPDAIAPFTVAVCPIGYDRSADVKAAADQLHDELAA 512

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G DV  DD GE+ G+ FA  +L+G P +V+V  + +    VE++ R       + L E 
Sbjct: 513 LGIDVVLDDRGERPGAMFADWELIGVPHRVVVSDRGLKAGTVEVQGRRETAAHTVPLAEA 572

Query: 435 INYASHRFS 443
           + +   R  
Sbjct: 573 VAFVKGRLK 581


>gi|91785266|ref|YP_560472.1| prolyl-tRNA synthetase [Burkholderia xenovorans LB400]
 gi|123358448|sp|Q13U19|SYP_BURXL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91689220|gb|ABE32420.1| Prolyl-tRNA synthetase [Burkholderia xenovorans LB400]
          Length = 578

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 135/288 (46%), Positives = 182/288 (63%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQSDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQ+Q KFRDE+RPRFGVMR REF+MKDAYSFD   +G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQVQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDMDGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-- 238
           Y+RIF RLGL    + A++G IGG  SHEF V+A+TGE  +       DF    E  +  
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIAETGEDAIAYCPT-SDFAANVEAAEAL 239

Query: 239 --FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
               +  +    +++   P  A  +   E L   L    +      E 
Sbjct: 240 PLHAERAAPAEEMKKTATPGKAKCEAVAELLNIPLERTIKSIILATEN 287



 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/192 (37%), Positives = 108/192 (56%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M+AT     GK   +
Sbjct: 382 PEPVVADIRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMNATCLDETGKPRPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R++ A IE + D +GIIWP+S+APF++ L  +     +  R+A +K+YA 
Sbjct: 442 EMGCYGIGVTRILGAAIEQNFDDRGIIWPESIAPFEVVLCPMGYDRSEAVREAADKLYAT 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       + +
Sbjct: 502 LLEAGIDVILDDRGERPGVMFADWELIGVPHRLVIGDRGLKDGKLEYQGRRDAEATLLPV 561

Query: 432 EEVINYASHRFS 443
           E+       +  
Sbjct: 562 EDAAQTVIAKVR 573


>gi|91774775|ref|YP_544531.1| prolyl-tRNA synthetase [Methylobacillus flagellatus KT]
 gi|123254834|sp|Q1H497|SYP_METFK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91708762|gb|ABE48690.1| prolyl-tRNA synthetase [Methylobacillus flagellatus KT]
          Length = 573

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 169/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P++AE+ASHKLMLR G+I +   G+YSW+PLG + L  V  I+REE
Sbjct: 1   MRASQFFLATQKEAPQEAELASHKLMLRAGLIKRLGSGLYSWMPLGLRVLRKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q  +LW E+GR+  +G +ML++ DR+++   +GPTHEEV+TDI R 
Sbjct: 61  MNRAGALELLMPAVQPKELWEETGRWAVFGPQMLKIRDRHERDFCFGPTHEEVITDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKD YSF  + E  + +Y+ M+ +
Sbjct: 121 EIRSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFVMKDGYSFHTSLESLQQTYDTMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF+RLGLK   +RA++G IGGD SHEF VLAD+GE  +   +   DF    E
Sbjct: 181 YSNIFNRLGLKFRAVRADTGAIGGDGSHEFHVLADSGEDALAYCEH-SDFAANVE 234



 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 105/187 (56%), Gaps = 3/187 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF   TKY+  M AT+   +G+  +++MG 
Sbjct: 387 VADIRNVVEGDPSPDGKGCISLCRGIEVGHIFQLRTKYTEAMEATYLDENGQKQFMEMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE  +D +GII+P ++APF +++  I     +  + A   +Y  LS +
Sbjct: 447 YGIGVSRIVGAAIEQGNDERGIIFPAAMAPFSVAIAPIGYDKSEAVQSAAHALYDELSAL 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD GE+ G  FA  +L+G P ++++G + + + +VE + R     E ++L +++
Sbjct: 507 GIDVLLDDRGERPGVMFADLELIGIPHRIVIGDRGLKEGQVEYQARTAASAETVALADIV 566

Query: 436 NYASHRF 442
           +      
Sbjct: 567 SIVRQAL 573


>gi|304439592|ref|ZP_07399496.1| threonine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371904|gb|EFM25506.1| threonine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 647

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 143/444 (32%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L T  +     G   +LP G    + +    R      
Sbjct: 240 EYIERMEEAEKRDHRRIGRELDLFT--MRDEGPGFPFFLPHGMILKNTLLNWWRNVLLEN 297

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +  LW  SG +D Y   M      + +     P +      ++     S
Sbjct: 298 GYGEIQTPIILNEALWHRSGHWDHYKDNM-YFTKIDGEDYAVKPMNCPGSILVYEEKAHS 356

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R EL     G+ R R F   DA+ + L  +     +         
Sbjct: 357 YRDLPIRLSEFGQVHRHELSGALHGLFRVRTFTQDDAHVYCLPEQVKDEVFKM-IDLAEL 415

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G K       + P     + E   +A+                        ++  
Sbjct: 416 LYSTFGFKYEI-ELSTRPDDFMGTIEAWNIAEKN-----------------LKDALEERG 457

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +I E   A Y    D H E              R  + G I     +       T+ 
Sbjct: 458 LKYTINEGDGAFYGPKIDFHLEDA----------IGRTWQCGTI-QLDFRMPENFELTYI 506

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            ADG+    V +    +G++     ++     GK  +W           + I    +   
Sbjct: 507 NADGEKARPVMLHRALLGSIERFMGILIEHFAGKFPLW------LAPVQVEIIPVSEKFH 560

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  E++  +L   G  V  D   E++G +   A L      +++G + V    + I+ R 
Sbjct: 561 DYAEEVKNKLKTSGFRVEMDTRAEKVGYKIRQAQLRKVNYMLVIGEQEVESGLLSIRKRS 620

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               +D+ +E+ I+         +
Sbjct: 621 GEEVKDVKIEDFISQMKEEVKEKK 644


>gi|257465911|ref|ZP_05630222.1| threonyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917067|ref|ZP_07913307.1| threonine-tRNA ligase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313690942|gb|EFS27777.1| threonine-tRNA ligase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 637

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 80/439 (18%), Positives = 161/439 (36%), Gaps = 42/439 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL +++E   RD      +L L    + ++  G   +LP G    + +  + R E  + G
Sbjct: 230 FLKLMEEAEKRDHRKLGKELELF--FLSEYGPGFPFFLPKGMVLRNTLIDLWRAEHEKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +++  P + + +LW  SG + +Y + M   +  +D      P +       F+    SY
Sbjct: 288 YVQIDTPIMLNRELWEISGHWFNYRENMYTSS-IDDVDFAIKPMNCPGGVLAFKYQQHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++    R E      G+ R R F   D++ F +T E  +     +     + 
Sbjct: 347 RDLPARVAELGKVHRHEFSGALHGLFRVRAFTQDDSHIF-MTEEQIESEIIGVVNLIDKF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + +L      +   + P     + E    A+T                 +     + +  
Sbjct: 406 YSKLFGFQYSIELSTRPEKSIGTDEIWEKAET-----------------ALAGALNHLGR 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D    K+ D++    +     ++    F    ++      T+ G
Sbjct: 449 EFKINEGDGAFYGPKLDF---KIKDAIGRTWQCGTIQLD----FNLPERFD----VTYIG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++   + G   +W   V    +++      +  C  
Sbjct: 498 EDGEKHRPVMIHRVIYGSIERFIGILIEHYAGAFPMWLAPVQVKVLTI------NDECAP 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRL 422
             +++ A+L   G     DD  E IG +   A+     P+QVI+G   +   +V ++   
Sbjct: 552 YAKEVVAQLKAQGIRAELDDRSESIGYKIREANGRYKIPMQVIIGKNEIEKREVNVRRFG 611

Query: 423 TGIREDMSLEEVINYASHR 441
           +  +E M L+  +      
Sbjct: 612 SQAQESMELDAFLAMVKEE 630


>gi|238787209|ref|ZP_04631008.1| Prolyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
 gi|238724471|gb|EEQ16112.1| Prolyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
          Length = 572

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +       D+    E
Sbjct: 181 YSKIFERMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVF-STGSDYAANIE 234



 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 74/192 (38%), Positives = 112/192 (58%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K      RGIEVGHIF  G+KYS  M AT +G DG++  +
Sbjct: 380 PLPQVADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGSKYSEAMKATVQGEDGRNQVM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     ++  E++YA 
Sbjct: 440 TMGCYGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVKELAEELYAT 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE K+R  G ++ +  
Sbjct: 500 LRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVEYKNRRAGEKQMIKT 559

Query: 432 EEVINYASHRFS 443
            E+I +   +  
Sbjct: 560 NEIIEFLLSQIK 571


>gi|260494526|ref|ZP_05814656.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
 gi|260197688|gb|EEW95205.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
          Length = 637

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 166/443 (37%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  K+   + +   RD      +L L    + ++  G   +LP G    + +  + R+E 
Sbjct: 226 KLKKHLKLVEEAEKRDHRKLGKELELF--FLSEYGPGFPFFLPKGMIVRNVLVDLWRKEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G +++  P + + +LW  SG + +Y + M   ++ ++      P +       F+  
Sbjct: 284 EKAGYLQLETPIMLNKELWEISGHWFNYRENMYT-SEIDEVEFAIKPMNCPGGVLAFKHQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SY++LP    ++    R E      G+MR R F   D++ F +TP+  +     +   
Sbjct: 343 LHSYKDLPARLAELGKVHRHEFSGALHGLMRVRSFTQDDSHIF-MTPDQVQDEIIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + + +L      +   + P     S E                   D    +     D
Sbjct: 402 IDKFYSKLFGFEYEIELSTKPEKAIGSQE-----------------IWDMAESALAGALD 444

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     I     A Y    D    K+ D++    +     ++    F    ++      
Sbjct: 445 KLGRKYKINPGDGAFYGPKLDF---KIKDAIGRMWQCGTIQLD----FNLPERFD----V 493

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G DG+ H    +     G++     ++   + G   +W   V    +++      + 
Sbjct: 494 TYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMWLAPVQVKVMTI------ND 547

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEI 418
            C    ++I A+L ++G     DD  E IG +   A+     P+Q+I+G   V + +V I
Sbjct: 548 ECVPYAKEIMAKLDELGIRAELDDRTETIGYKIREANGRYRIPMQLIIGKNEVENKEVNI 607

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  +   SL+E  NY    
Sbjct: 608 RRFGSKDQFSKSLDEFYNYVVDE 630


>gi|294677983|ref|YP_003578598.1| threonyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
 gi|294476803|gb|ADE86191.1| threonyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
          Length = 648

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 146/445 (32%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  + +L+E   RD      ++ L    + + + G   W P G      +   +R  Q  
Sbjct: 234 KAHMTMLEEAAKRDHRKLGREMDLF--HMQEEAPGQVFWHPNGWTIYTTLQDYMRRRQRA 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G +E++ P + +  LW  SG +++Y + M  +       R        P +      IF
Sbjct: 292 DGYVEVNTPQVVNRKLWEASGHWENYRENMFIVEVDEEGAREKVINALKPMNCPCHVQIF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   DA+ F +  +  +    K 
Sbjct: 352 NVGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDAHIFCM-EDQIEAETKKF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++  LG     ++  + P     + E                   D    +   
Sbjct: 411 IEFLSAVYADLGFDKWRIKLSTRPEKRIGTEE-----------------SWDHAEAALAN 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I E   A Y    +     L D++  + +     ++              
Sbjct: 454 AVTAAGHEYEIFEGEGAFYGPKLEF---VLTDAIGRDWQCGTLQVDPNLP--------ER 502

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A + G DG  H    +    +G+      ++  SH GK  +W         S+     
Sbjct: 503 LDANYIGPDGAKHRPVMLHRACLGSFERFIGILIESHAGKLPLWLAPRQVVVASIT---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  E++ A L   G     D   E+I  +     L   P    +G+K V    V
Sbjct: 559 --SEADDYVEEVAATLIAAGIRAECDTRNEKINYKVREHSLGKVPYIFAIGAKEVETRTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++       E ++L+ ++      
Sbjct: 617 SVRRLGDTRTETVALDAIVAALKAE 641


>gi|303228556|ref|ZP_07315384.1| proline--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516803|gb|EFL58717.1| proline--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 572

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 122/290 (42%), Positives = 177/290 (61%), Gaps = 4/290 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+E P DA++ S +LMLR G + + + G+YS+LPLG +++  + AIIREE
Sbjct: 1   MLASKLYAPTLREVPSDADVVSQQLMLRAGFMRKVANGLYSFLPLGWRSIKKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRSGAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDVEYCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKD YSFD+    +  SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDGYSFDIDDAAADVSYKNMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL   P+ A+SG IGG  +HEF+ +A+ GE  +       D+    E     
Sbjct: 181 YSRIFTRCGLTFRPVEADSGAIGGSNTHEFMAIAEAGEADI-IHCSACDYAANIEIGKPG 239

Query: 241 DIISLNSIVEQWTA---PYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            +      +++      P+A+T +   E L   L +  +     IE   I
Sbjct: 240 IMKQAEEALKELEVVDTPHASTIEAVAEMLNLPLEKTIKAVVYAIEDKVI 289



 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 67/177 (37%), Positives = 98/177 (55%), Gaps = 2/177 (1%)

Query: 269 DSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  PE       ++GIEVG +F  GTKYS  + AT+   +G+ + + MG YGIG  R +A
Sbjct: 394 DVCPECHSPLEYSKGIEVGQVFKLGTKYSESLQATYLDQNGRPNAMVMGCYGIGVSRTLA 453

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A IE  HD  GIIWP ++APF++ ++ I A D+        IY  L     DV  DD  +
Sbjct: 454 AAIEQYHDENGIIWPRAIAPFEVVIVPINAKDEALMSTSTSIYDTLLNNKVDVLLDDRKD 513

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + G +F  ADL+G+PL++ V    +  ++VEI+ R TG   +  ++EV N      S
Sbjct: 514 RAGVKFKDADLIGYPLRITVSKNTLESNEVEIRVRKTGEAINCPIDEVSNKVQELLS 570


>gi|261867437|ref|YP_003255359.1| prolyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412769|gb|ACX82140.1| prolyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 571

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 122/243 (50%), Positives = 162/243 (66%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P +A + SH+LMLR GMI   + G+Y+WLP G + L  V  IIR+E
Sbjct: 1   MRTSKYLLSTLKETPAEAAVVSHQLMLRAGMIRPLASGLYNWLPTGLRVLKKVENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKSGAIEVEMPVVQPAELWQESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYRQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHTSKESLQETYDVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA++GE  V       D+    E  +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLANSGEDDVIF-STESDYAANIELAEAV 239

Query: 241 DII 243
            + 
Sbjct: 240 AVG 242



 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNINWERDVALPKIADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGDKYSQTM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
           +AT +G DG+   V MG YGIG  RVVAA IE  HD +  I   D++APF ++++ +   
Sbjct: 424 NATVQGEDGRPMVVTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDAIAPFSVAIVPMNMY 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E +Y  L   G +V +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFAEDLYRTLQAQGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++  +++++   + +
Sbjct: 544 EYKNRRTGEKQMIAKAQLLDFLKSQIN 570


>gi|33594237|ref|NP_881881.1| prolyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|81836185|sp|Q7VTZ8|SYP_BORPE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33564312|emb|CAE43613.1| prolyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|332383651|gb|AEE68498.1| prolyl-tRNA synthetase [Bordetella pertussis CS]
          Length = 576

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 130/288 (45%), Positives = 179/288 (62%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P +AEIASH+LM R GMI + + GIY+++PLG K +  +  I+REE
Sbjct: 1   MRASKYHLNTLKEAPAEAEIASHQLMTRAGMIRKLAGGIYTYMPLGLKVIRKIEGIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q A+LW+ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAIELLMPVVQPAELWMESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G++ SY+ M+ +
Sbjct: 121 EIQSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGAQRSYDIMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+   + A++G IGG  SHEF V+ADTGE  +  +    D+    E  +  
Sbjct: 181 YQRIFQRLGLEFRAVAADTGSIGGSRSHEFQVIADTGEDLIVYN-PESDYAANIELAEAP 239

Query: 241 DI----ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            +     +    +E    P AA  +   + L   L    +     ++ 
Sbjct: 240 ALLATRAAPGQDLEAVPTPGAAKCEDVAKLLDLPLARTIKSIVLAVDQ 287



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/188 (35%), Positives = 102/188 (54%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGH+F+ GTKYS  + ATF   +GK   +QMG 
Sbjct: 387 VADLRNVVEGDPSPDGKGALSIQRGIEVGHVFFLGTKYSEALKATFLDDNGKPAVLQMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE +HD +GIIWP ++AP+++ +  +     +  RD    +Y  L   
Sbjct: 447 YGIGVTRIVGAAIEQNHDARGIIWPRAIAPYEVVICPVGWGKSETVRDTALALYEALRAR 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD   + G  FA  +L+G PL+V VG + +++  VE++ R       + +++ +
Sbjct: 507 GVDVMLDDRDSRPGVMFAEWELIGVPLRVTVGERGLNEGVVELQARREAEAAKVPVDQAL 566

Query: 436 NYASHRFS 443
                +  
Sbjct: 567 AQTLAKLD 574


>gi|33603207|ref|NP_890767.1| prolyl-tRNA synthetase [Bordetella bronchiseptica RB50]
 gi|81836865|sp|Q7WFN9|SYP_BORBR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33568838|emb|CAE34596.1| prolyl-tRNA synthetase [Bordetella bronchiseptica RB50]
          Length = 576

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 130/288 (45%), Positives = 179/288 (62%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P +AEIASH+LM R GMI + + GIY+++PLG K +  +  I+REE
Sbjct: 1   MRASKYHLNTLKEAPAEAEIASHQLMTRAGMIRKLAGGIYTYMPLGLKVIRKIEGIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q A+LW+ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAIELLMPVVQPAELWMESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G++ SY+ M+ +
Sbjct: 121 EIQSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGAQRSYDIMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+   + A++G IGG  SHEF V+ADTGE  +  +    D+    E  +  
Sbjct: 181 YQRIFQRLGLEFRAVAADTGSIGGSRSHEFQVIADTGEDLIVYN-PESDYAANIELAEAP 239

Query: 241 DI----ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            +     +    +E    P AA  +   + L   L    +     ++ 
Sbjct: 240 ALLATRAAPGQDLEAVPTPGAAKCEDVAKLLDLPLARTIKSIVLAVDQ 287



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/188 (35%), Positives = 102/188 (54%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGH+F+ GTKYS  + ATF   +GK   +QMG 
Sbjct: 387 VADLRNVVEGDPSPDGKGALSIQRGIEVGHVFFLGTKYSEALKATFLDDNGKPAVLQMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE +HD +GIIWP ++AP+++ +  +     +  RD    +Y  L   
Sbjct: 447 YGIGVTRIVGAAIEQNHDARGIIWPRAIAPYEVVICPVGWGKSETVRDTALALYEALRAR 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD   + G  FA  +L+G PL+V VG + +++  VE++ R       + +++ +
Sbjct: 507 GVDVMLDDRDSRPGVMFAEWELIGVPLRVTVGERGLNEGVVELQARREAEAAKVPVDQAL 566

Query: 436 NYASHRFS 443
                +  
Sbjct: 567 AQTLAKLD 574


>gi|291515296|emb|CBK64506.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Alistipes shahii
           WAL 8301]
          Length = 604

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 158/451 (35%), Gaps = 42/451 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD       L L T    +  +G+  WLP G    D +   +R  Q   
Sbjct: 183 EYLAMMEEAKKRDHRKLGKDLELFT-FSQRVGQGLPLWLPKGAALRDRLEQFLRGVQKEY 241

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN--DKAMIYGPTHEEVMTDIFRSHI 122
           G  ++  P + + +L+V SG Y  YGK+  +        +  +  P +     +I+RS  
Sbjct: 242 GYQQVITPHIGNKELYVTSGHYAKYGKDSFQPIHTPIEGEEYLLKPMNCPHHCEIYRSKP 301

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP    +    +R E      G+ R R F   DA+ F    +  +  + ++    
Sbjct: 302 RSYKELPVRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFVRPDQLLEE-FERVIDIV 360

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L IF  L   +   +                  D    + +   D       S       
Sbjct: 361 LYIFKTLKFDNYTAQISLR--------------DPNNKEKYIGSDENWEKAESAIMQAAK 406

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L ++VE    A Y    D     + D++    ++    ++                 
Sbjct: 407 EKGLTTVVELGEAAFYGPKLDFM---VKDAIGRKWQLGTIQVDYNLP--------ERFDL 455

Query: 301 TFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+KG  D     + +     G+M    AV+     GK  +W           + +    +
Sbjct: 456 TYKGADDRLHRPIMIHRAPFGSMERFVAVLLEHTGGKFPLW------LSPQQVVVLPISE 509

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  +K+   L++       DD  E+IG +    +L   P  +IVG K  ++  V ++
Sbjct: 510 KFNDYAQKVSEFLNRSDVRTEVDDRNEKIGRKIRDNELKRIPYLLIVGEKEEAEGLVSVR 569

Query: 420 HRLTGIREDMSLEEVINYA----SHRFSNNR 446
            +  G +  MSLE   ++           N+
Sbjct: 570 AQGEGDKGQMSLEAFRDFIAGLVKEEIEANK 600


>gi|270157462|ref|ZP_06186119.1| prolyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|289164147|ref|YP_003454285.1| Prolyl-tRNA synthetase (Proline--tRNA ligase)(ProRS)(Global RNA
           synthesis factor) [Legionella longbeachae NSW150]
 gi|269989487|gb|EEZ95741.1| prolyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|288857320|emb|CBJ11147.1| Prolyl-tRNA synthetase (Proline--tRNA ligase)(ProRS)(Global RNA
           synthesis factor) [Legionella longbeachae NSW150]
          Length = 569

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 168/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL  L+E P DAEI SH+LM+RTGMI +   G+Y+W+PLG K L  +  I+REE
Sbjct: 1   MRASQWFLATLKETPNDAEIVSHQLMVRTGMIRKLGSGLYTWMPLGLKVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   ++E+ +P +Q A+LW E+GR+D++G ++L + D ND+   +GPTHEEV+TDI R 
Sbjct: 61  MNNINSMEVLMPAVQPAELWQETGRWDTFGGQLLTMKDSNDREYCFGPTHEEVITDIMRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP +FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L  E  + +Y  M+ +
Sbjct: 121 ELQSYKQLPASFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLNLESLQDTYKDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGLK   + A++G IGG  SHEF VLAD+GE  +F S    D+    E
Sbjct: 181 YCRIFDRLGLKYRAVEADTGAIGGSASHEFQVLADSGEDLIFYSDQG-DYAANIE 234



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 8/206 (3%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSA 300
            + +  V+++ A      D+ N K  D  P+ K    S RGIEVGH+F  G KY+  M+A
Sbjct: 369 AAWDKDVKEYLAF-----DLRNVKDGDISPDGKGTLYSCRGIEVGHVFQLGDKYAKAMNA 423

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQ 359
                 G+   + MG YG+G  RVVAA IE  HD KGIIWP ++APF++ +I + AH   
Sbjct: 424 VVINEQGQLETMLMGCYGLGITRVVAAAIEQHHDEKGIIWPQNIAPFQLVIIPLNAHRSP 483

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   +++Y +   +  DV  DD  E+ G  FA  DL+G P +++V  + +  + VE K
Sbjct: 484 EVKKQADRLYEQFKNLSIDVLIDDRNERAGVLFADHDLIGIPHRLVVSDRNIEQNCVEYK 543

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R TG  +  +L+  ++      S +
Sbjct: 544 SRATGEMQQFNLDTAVDSVLKLISKS 569


>gi|78065148|ref|YP_367917.1| prolyl-tRNA synthetase [Burkholderia sp. 383]
 gi|114152177|sp|Q39JU3|SYP_BURS3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|77965893|gb|ABB07273.1| Prolyl-tRNA synthetase [Burkholderia sp. 383]
          Length = 578

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 136/288 (47%), Positives = 182/288 (63%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G IE+ +P +Q A+LW ESGR++ YG E+LR  DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGGIELLMPAVQPAELWQESGRWEQYGPELLRFKDRKDNDFVIGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLNESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y+RIF RLGL+   + A+SG IGG+ SHEF V+ADTGE  +       +F    E  +  
Sbjct: 181 YVRIFTRLGLEFRAVAADSGSIGGNFSHEFHVIADTGEDAIAYCPT-SEFAANIEAAEAL 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
               +  +    +E+   P  A  +   E L   L    +      + 
Sbjct: 240 PLIAERAAPAEAMEKVATPGKAKCEAVAELLAIPLERTIKSIVLATDN 287



 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 71/179 (39%), Positives = 101/179 (56%), Gaps = 3/179 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +DV N K  D  P+ K V    RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 382 PEPDVADVRNVKKGDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMGATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YG+G  R++ A IE + D KGIIWP+S+APF++ L  +      + R+  +K+YA 
Sbjct: 442 LMGCYGVGVTRILGAAIEQNFDDKGIIWPESIAPFEVVLCPMGYDRSDMVRETADKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L   G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R       + 
Sbjct: 502 LVAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKIEYQGRRDAEATLLP 560


>gi|221633051|ref|YP_002522276.1| threonyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
 gi|221156502|gb|ACM05629.1| threonyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
          Length = 596

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 152/442 (34%), Gaps = 39/442 (8%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      +L L        + G+  WLP G K L+ +    R+E  + G
Sbjct: 183 YLHRLEEAERRDHRRLGRELELF--HFDPTAPGMPYWLPKGLKILNLLLDFWRQEHEKRG 240

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E++ P +    LW  SG +D Y + M  +           P +      ++    +SY
Sbjct: 241 YQEIAAPLINDKSLWEVSGHWDHYRENMFLIQLDEHLTYGVKPMNCPNAMIVYNLKKRSY 300

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP       +  R E      G++R R+F   DA+ F  T +  +  + ++       
Sbjct: 301 RDLPLRLSDCDILHRYERSGTLHGLLRVRKFQQDDAHIFV-TEDQIEEEFARILEIAQLF 359

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL+   +R  + P       E    A+    ++                       
Sbjct: 360 YGIFGLRY-TLRLGTRPADFMGDPETWDKAEAALQRILDRHAG---------------PG 403

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+  E   D+L    +     ++    F    ++      T+  
Sbjct: 404 NYLIGEGEGAFYGPKIDILME---DALGRQWQTGTIQLD----FQLPRRF----GCTYTD 452

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG +     +     G++     ++     G   +W   V    I +            
Sbjct: 453 RDGTEKTPVVIHRVIYGSLERFIGILIEHFAGAFPVWLAPVQATIIPIA------DRHLP 506

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  RL   G  V  DD  E++ ++   A L   P  ++VG + V++  + ++ R  
Sbjct: 507 YAYRVRDRLRDAGLRVEVDDGDERMQAKIRSAQLQKIPYMLVVGDREVNEESLAVRLRTN 566

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+E  I       +  
Sbjct: 567 ENIGSMSIERFITMVQRLVAEK 588


>gi|94498868|ref|ZP_01305406.1| prolyl-tRNA synthetase [Oceanobacter sp. RED65]
 gi|94428500|gb|EAT13472.1| prolyl-tRNA synthetase [Oceanobacter sp. RED65]
          Length = 584

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 118/223 (52%), Positives = 159/223 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +  L+E+P DA + SH+LMLR GMI + + G+Y+WLPLG K L  V  ++REE
Sbjct: 1   MRASQYLVATLKESPSDAVVVSHQLMLRAGMIRKLASGLYTWLPLGLKTLRKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +Q A+LW ESGR+  YG E+LRL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGAQEVLMPAVQPAELWEESGRWFEYGGELLRLKDRHNRDFCVGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE RPRFGVMRSREF+MKDAYSF +  +  + +Y++M  +
Sbjct: 121 ELNSYKQLPSNFYQIQTKFRDETRPRFGVMRSREFIMKDAYSFHIDGDSLQQTYDRMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y  IF RLGL   P+ A++G IGG +SHEF VLA +GE  +  
Sbjct: 181 YTNIFTRLGLDFRPVAADTGSIGGAVSHEFHVLAQSGEDDIAF 223



 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/184 (38%), Positives = 104/184 (56%), Gaps = 5/184 (2%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A      D+ N    D+ P+ +      RGIEVGHIF  GTKYS  + A     +GK
Sbjct: 383 ERDAHIDRIEDLRNVVEGDASPDGQGTLEIKRGIEVGHIFQLGTKYSEALGAKVLDENGK 442

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
           +  + MG YGIG  RVVAA IE +HD +GIIWP+++APF++S++ I A   +      E+
Sbjct: 443 EKTMMMGCYGIGVSRVVAAAIEQNHDDRGIIWPEAIAPFQVSIVQIDAQKSEDVVKYSEE 502

Query: 368 IYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +Y  L+ +G DVF DD  +    G +FA ++L+G P +V++ S+ +   K E KHR    
Sbjct: 503 LYESLTALGVDVFLDDRDKKTSPGVKFADSELMGIPHRVVLSSRGLKAGKAEYKHRKDSK 562

Query: 426 REDM 429
              +
Sbjct: 563 DGIV 566


>gi|114319700|ref|YP_741383.1| prolyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122312397|sp|Q0AB94|SYP_ALHEH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114226094|gb|ABI55893.1| prolyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 568

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 159/235 (67%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S + L   +E P DAEI SH+LMLR GMI + + G+Y+W PLG + L  V  I+REE
Sbjct: 1   MRASLFPLSTSKETPADAEIVSHQLMLRAGMIRKLAAGLYTWTPLGLRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q A+LW ES R+D YG E+LRL DR+++   +GPTHEEV+TD  R 
Sbjct: 61  MDRAGAHELLMPAVQPAELWQESTRWDKYGPELLRLKDRHERDFCFGPTHEEVITDYVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFGVMR+REFLMKDAYSF L  +    +Y  M+ +
Sbjct: 121 EVKSYRQLPLNLYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLDDDCLARTYQVMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL    + A+SG IGG +SHEF VLA++GE  V  S    D+    E
Sbjct: 181 YTRIFERTGLVFRAVAADSGNIGGSVSHEFHVLAESGEDAVAFSD-ESDYAANVE 234



 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 104/205 (50%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I           +D+      D  P+ +     ARGIEVGHIF  G +YS  M
Sbjct: 363 DDAHYFGINWGRDVALPEVADLREVVAGDPSPDGRGTLEIARGIEVGHIFQLGREYSEKM 422

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
            AT     G    V MG YGIG  RVVAA IE +HD  GIIWP  +APF+++L+ I  + 
Sbjct: 423 KATVLNEAGDAQTVTMGCYGIGVSRVVAAAIEQNHDDNGIIWPAPIAPFQLALVPIGMNR 482

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +  EK+YA L   G +VF+DD   + G +FA  +L+G P ++++G + + +  VE
Sbjct: 483 SEAVTEQAEKLYAELQAEGVEVFFDDRDARPGVKFADMELIGIPHRLVIGDRGLKNGVVE 542

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            + R      D+ L E+  +   R 
Sbjct: 543 YRGRRDSESTDVPLAELSAFLRERL 567


>gi|238897616|ref|YP_002923295.1| proline tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259511602|sp|C4K3K4|SYP_HAMD5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|229465373|gb|ACQ67147.1| proline tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 579

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 142/413 (34%), Positives = 206/413 (49%), Gaps = 36/413 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  +  I+REE
Sbjct: 1   MRTTQYLLSTLKELPADAEIISHQLMLRAGMIRKLASGLYTWLPTGTRVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q ADLW ES R++ YG E+LR ADR+++  + GPTHEEV+TD+ R+
Sbjct: 61  MNKAGAIEVVMPIVQPADLWQESERWEHYGPELLRFADRSERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFG+MR+REFLMKDAYSF  T E  + +Y  M+ +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEIRPRFGIMRAREFLMKDAYSFHNTLESLQETYQTMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN---- 236
           Y +IF R+ L    ++A++G IGG  SHEF VLAD+GE ++       DF    E     
Sbjct: 181 YTKIFERMQLNFRAVQADTGSIGGSRSHEFQVLADSGEDEIVF-STVSDFAANIELAEAL 239

Query: 237 ---------------TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                           D  +  +++ +VEQ++ P   T               K ++   
Sbjct: 240 VPHEKRASPCETLRIIDTPNAKTIDQLVEQFSIPIEKTLKTLIVYAHKDSGH-KLLALLV 298

Query: 282 IEVGHIFYFGTKYSLP--MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
                I     + S       TF   +    ++  G   +G + +   +I          
Sbjct: 299 RGDHLINKVKAEKSPQVAKPLTFASEEDIRAHIGAGPGSLGPLHLKMPIIADRAVAVMSD 358

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYA-------------RLSKVGCDV 379
           +             I     +     E +                L K G +V
Sbjct: 359 FSAGSNKEDQHYFGINWERDLPLPIIEDLRNVVEGDPSPDGKGTLLIKRGIEV 411



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/196 (35%), Positives = 115/196 (58%), Gaps = 5/196 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A  +G +G+   +
Sbjct: 380 PLPIIEDLRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSQAMGAKVQGENGRQQMM 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R+VAA IE  HD  GI+WP+++APF+++++ I        R   E++YA 
Sbjct: 440 IMGCYGIGVSRLVAAAIEQHHDQHGILWPEAIAPFQVAILPIHLKKSDAVRQEAERLYAE 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR--LTGIREDM 429
           LS +G DV +DD  E+ G  FA  +L+G P  +I+G + + ++++E ++R      ++ +
Sbjct: 500 LSSLGMDVIFDDRQERPGVMFADMELIGIPHTLIIGDRDLENNELEYRYRGIDDHKKQQL 559

Query: 430 SLEEVINYASHRFSNN 445
            + +V+++   + +++
Sbjct: 560 KISDVVSFLLEKINSH 575


>gi|227327749|ref|ZP_03831773.1| prolyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 572

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLWVESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWVESGRWDQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQVTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L    ++A++G IGG+ SHEF VLA +GE  +       D+    E
Sbjct: 181 YSKIFSRMDLDFRAVQADTGSIGGNASHEFQVLATSGEDDIVF-STESDYAANIE 234



 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 70/187 (37%), Positives = 109/187 (58%), Gaps = 3/187 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF  G+KYS  + AT +G DG++  + MG 
Sbjct: 384 VADIRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGSKYSEALKATVQGEDGRNQTLTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD +GIIWPD++APF ++++ +  H     ++  E IY +L   
Sbjct: 444 YGIGVTRVVAAAIEQNHDERGIIWPDAIAPFHVAILPMNMHKSFRVKEVAEDIYQQLRAK 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G ++ +   E+I
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEIEYKNRRGGEKQMIKTSEII 563

Query: 436 NYASHRF 442
           ++     
Sbjct: 564 DFLLANI 570


>gi|332289599|ref|YP_004420451.1| prolyl-tRNA synthetase [Gallibacterium anatis UMN179]
 gi|330432495|gb|AEC17554.1| prolyl-tRNA synthetase [Gallibacterium anatis UMN179]
          Length = 568

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 125/252 (49%), Positives = 167/252 (66%), Gaps = 1/252 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPTDAEVVSHQLMLRAGMIRKLAAGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q ADLW ES R++ YG E+LR  DR D+  + GPTHEEV+TD+ R 
Sbjct: 61  MNKSGAIEVVMPVVQPADLWQESQRWEQYGPELLRFTDRGDRPFVLGPTHEEVITDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKD YSF L  E  + +Y+ M  +
Sbjct: 121 ELSSYKQLPINLYQIQTKFRDEVRPRFGVMRSREFIMKDGYSFHLDKESLQQTYDVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF+RLGL   P++A++G IGG  SHEF VLAD+GE  +       D+    E  +  
Sbjct: 181 YCNIFNRLGLDFRPVQADNGSIGGSGSHEFQVLADSGEDDIVF-STESDYAANIEMAEAV 239

Query: 241 DIISLNSIVEQW 252
            +    +  E+ 
Sbjct: 240 ALGERQAATEEL 251



 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/192 (35%), Positives = 108/192 (56%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D     +   +  RGIEVGHIF  G KYS  M AT +G DGK   +
Sbjct: 377 PTPQIADIRNVVEGDPSPCGKGTLLIKRGIEVGHIFQLGKKYSEAMKATVQGEDGKPQTM 436

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YGIG  RVVAA IE SHD +GIIW D++APF+++++ +        +   E++Y  
Sbjct: 437 MMGCYGIGITRVVAAAIEQSHDERGIIWSDALAPFQVAIVPMNMHKSAAVQQYAEELYQT 496

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V +DD  E+ G  FA  +L+G P  +I+G K +   ++E K R +G ++ +  
Sbjct: 497 LLAQGIEVLFDDRKERPGVMFADMELIGIPHMIIIGEKNLEKGEIEYKSRRSGEKQMVDK 556

Query: 432 EEVINYASHRFS 443
           ++++ + + +  
Sbjct: 557 QQLVKFITEKLK 568


>gi|330815470|ref|YP_004359175.1| Prolyl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327367863|gb|AEA59219.1| Prolyl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 578

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 129/235 (54%), Positives = 170/235 (72%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR+ DR D   + GPTHEEV+TDI R+
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEQYGPELLRIKDRKDNDFVIGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G K SY KM+ +
Sbjct: 121 QIKSYRQMPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDQAGLKESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y+R+F R+GL+   + A++G IGG  SHEF V+ADTGE  +       +F    E
Sbjct: 181 YVRVFTRIGLEFRAVAADNGSIGGSGSHEFHVIADTGEDAIAYC-PSSEFAANVE 234



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 72/196 (36%), Positives = 107/196 (54%), Gaps = 7/196 (3%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N +  D  P+ K V    RGIEVGH+F  GTKYS  M +TF    GK   +
Sbjct: 382 PEPEVADLRNVQKGDPSPDGKGVLDICRGIEVGHVFQLGTKYSKAMGSTFLDEGGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R++ A IE + D KGIIWP+S+APF++ L  +     +  R+A ++++A 
Sbjct: 442 EMGCYGIGITRILGAAIEQNFDDKGIIWPESIAPFEVVLCPMGYDRSEAVRNAADQLHAD 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       +  
Sbjct: 502 LLAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGRRDTEASLLPA 561

Query: 432 E----EVINYASHRFS 443
           E     VI       +
Sbjct: 562 EGAALTVIEKVREALA 577


>gi|260062396|ref|YP_003195476.1| threonyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
 gi|88783959|gb|EAR15130.1| threonyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
          Length = 646

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 162/444 (36%), Gaps = 39/444 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T   H+  +G+  WLP G    + +   +++ Q + G
Sbjct: 231 YLHMLEEAKKRDHRKLGKELELFT-FSHKVGQGLPLWLPKGAALRERLEQFLKKAQKKAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +  P +   +L+V SG Y  YG++  +     R D+  +  P +     +IF +   
Sbjct: 290 YEMVVTPHIGQKELYVTSGHYAKYGEDSFQPIHTPREDEEFLLKPMNCPHHCEIFNATPV 349

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +    +R E      G+ R R F   DA+ F    +  +  +  +    L
Sbjct: 350 SYRDLPKRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCTHDQLDEE-FKNVIDLSL 408

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +   LG ++   +                + D  + + +  +        +        
Sbjct: 409 YVLGSLGFENFTAQVS--------------IRDPEKPEKYIGEVENWEKAEAAIIHAATE 454

Query: 243 ISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             L+ ++E    A Y    D     + D+L    ++    ++                 T
Sbjct: 455 KGLDFVIEPGEAAFYGPKLDFM---VKDALGRQWQLGTIQVDYTLP--------ERFDLT 503

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +KG+D + H    +     G+M    A++     G   +W        + +       + 
Sbjct: 504 YKGSDNELHRPVMIHRAPFGSMERFVALLLEHTGGNFPLWLTPQQAIVLPV------SEK 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +K+   L         D   E +G +   A++  +P  +IVG + ++D  + ++ 
Sbjct: 558 HENYAQKVLNSLENHEIRALLDARSETVGKKIREAEMGKYPFMIIVGDQEMTDGTISVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
                   +++E +        ++
Sbjct: 618 HGGEDLGSITVEALSGLVKEEINS 641


>gi|114799933|ref|YP_761871.1| threonyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
 gi|123027650|sp|Q0BXC2|SYT_HYPNA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114740107|gb|ABI78232.1| threonyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
          Length = 657

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 152/450 (33%), Gaps = 52/450 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L        ++G   W P G      + A IR +Q+  G 
Sbjct: 234 LTRLEEAEKRDHRKLGAQLDLF--HFQPEAQGSVFWHPKGFMIWRELEAYIRRQQDADGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYGPTHEEV 113
           +E+  P L ++  W +SG +  + + M  + D                + M   P +   
Sbjct: 292 VEVKTPQLLNSVFWEKSGHWSKFRENMFVVPDEIPSTESDAPILSGEGELMALKPMNCPA 351

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF++  +SYR+LP    +     R+E      G+MR R+    DA+ F    + +  
Sbjct: 352 HVQIFKNAQRSYRDLPIRMAEFGCCHRNEAHGALHGLMRVRQMTQDDAHIFCREDQIADE 411

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +  +    +  ++   GL  I  +  + P     + E                   D   
Sbjct: 412 T-LRFLKLFETVYGDFGLSEISYKLATRPEMRAGTDE-----------------TWDRAE 453

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +            SI E   A Y    + H   L D++    +           F    
Sbjct: 454 KALADALTAAGMTFSIAEGEGAFYGPKLEFH---LTDAIGRTWQCG--------TFQLDY 502

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                + A + G+DG  H    +     G       ++  ++ G   +W           
Sbjct: 503 VLPERLDAEYTGSDGAKHRPVMLHRAVFGTFERFMGILIENYAGSFPLW------MSPVQ 556

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + + A      D  E+  A L K G  V  D   E I  +     +   P+  +VG++  
Sbjct: 557 VVVAAITDAAGDYAEEAAAALRKAGLRVEVDKRNETINYKVREHSVQKVPVIAVVGAREA 616

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            D K+ ++   +  ++ +SL+E +   +  
Sbjct: 617 EDRKLALRRLGSNGQQIISLDEALVALADE 646


>gi|295687966|ref|YP_003591659.1| threonyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
 gi|295429869|gb|ADG09041.1| threonyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
          Length = 658

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 141/437 (32%), Gaps = 39/437 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       + L    I +  KG+  W P G      +   +R   +  G
Sbjct: 237 YLKRIEEAEKRDHRKLGKTMDLF--HIQEEGKGMVFWHPKGWALYRVLEDYMRRRLDAAG 294

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG  + +G  M        + +   P +      IF    KSY
Sbjct: 295 YKEVKTPQILDKSLWEKSGHAEKFGHAMFMCESAEGEVLAVKPMNCPGHIQIFNVGQKSY 354

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R E      G+MR R F   DA+ F    + ++ S  +       +
Sbjct: 355 RELPLRMAEFGACHRYEPSGAMHGIMRVRAFTQDDAHIFCREEQVTEES-ARFIELLRSV 413

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           ++ LG+     +  + P     + E                   D    + +   +    
Sbjct: 414 YNDLGMTLADTKFSTRPDLRAGTDE-----------------VWDKAESALSAAAEAAGE 456

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D++    +     ++    F    +    + A +  
Sbjct: 457 TLVLQPGEGAFYGPKLEF---SLKDAIGRVWQCGTLQLD----FVLPER----LDAEYVS 505

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +    +G+      ++  +  G   +W         ++           D
Sbjct: 506 EDGSKKRPVMLHRAILGSFERFIGILLENFAGALPVWLAPTQVVVATIT------SDADD 559

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L+K+G     D   E+I  +     L   P+  +VG K     ++ ++    
Sbjct: 560 YAREVVETLTKLGMRAELDLRNEKINYKIREHSLAKVPVIAVVGRKEAETRQLALRRLGG 619

Query: 424 GIREDMSLEEVINYASH 440
             +  +SLEE I+  + 
Sbjct: 620 EGQSILSLEEAISVLTS 636


>gi|293611014|ref|ZP_06693313.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826666|gb|EFF85032.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 571

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPELLRFKDRHTNPFVLGPTHEEVITDMARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +       D+    E
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAF-STESDYAANVE 234



 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 73/192 (38%), Positives = 105/192 (54%), Gaps = 3/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A  +   D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G DGK
Sbjct: 379 ERDAQISEIFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGEDGK 438

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              V MG YGIG  RVVAA IE ++D KGIIWP ++APF+I+++ + A       +A E 
Sbjct: 439 PFTVTMGCYGIGVTRVVAAAIEQNYDDKGIIWPQAIAPFEIAIVPMNAHKSPRTLEAAES 498

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R      
Sbjct: 499 LYAELQAQGFDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDAEAS 558

Query: 428 DMSLEEVINYAS 439
           +++ EE++   +
Sbjct: 559 NLTKEELLAKLA 570


>gi|13471046|ref|NP_102615.1| threonyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
 gi|22654133|sp|Q98LR2|SYT_RHILO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|14021790|dbj|BAB48401.1| threonyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
          Length = 658

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 148/445 (33%), Gaps = 39/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +  +L+E   RD      ++ L      +   G+  W   G K   N+   +R   + 
Sbjct: 233 EAYQTMLEEAEKRDHRKLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVNYMRRRLDE 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 QGYQEVNAPQVLDKSLWETSGHWGWYRDAMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 351 KHGLKSYRDLPVKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQLASECLRIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G   I ++  + P     + E    A+            M   + +  T
Sbjct: 411 -DLILSTYADFGFDEISVKLSTRPDKRVGTDEAWDHAEA----------IMGSVLETIRT 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              + I   SI     A Y    +     L D++    +     ++      FG      
Sbjct: 460 RSGNRIK-TSINPGEGAFYGPKFEY---VLKDAIGREWQCGTTQVDFNLPERFG------ 509

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  ++ G   +W         ++     
Sbjct: 510 --AFYIGSDSEKKQPVMVHRAICGSMERFLGILIENYSGHFPLWFAPQQVVVATIT---- 563

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     ++ A+L   G     D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 564 --SEADGYATEVVAKLKAAGLLAEADLRNEKINYKVREHSLAKVPVILVCGKREAEEQTV 621

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+   +  +E + L E I   +  
Sbjct: 622 NIRRLGSRDQESLGLAEAIAQLTEE 646


>gi|207721477|ref|YP_002251917.1| prolyl-trna synthetase protein [Ralstonia solanacearum MolK2]
 gi|206586637|emb|CAQ17223.1| prolyl-trna synthetase protein [Ralstonia solanacearum MolK2]
          Length = 574

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 127/277 (45%), Positives = 176/277 (63%), Gaps = 5/277 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G +A+  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYTYMPVGLRAIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+EM +P +Q  +LW E+GR+D  G+E++R+ DR+++ ++  PT EEV+TDI R+
Sbjct: 61  MNAAGAVEMLMPVVQPGELWQETGRWDKMGEELMRVKDRHERDLVIQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KMF +
Sbjct: 121 EIRSYKQMPVNFYQIQNKFRDERRPRFGIMRGREFTMKDAYSFDRDVEGMKVSYQKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL    + A++G IGG  SHEF V+A+TGE  +       D+    E  +  
Sbjct: 181 YTRIFQRFGLAFRAVAADNGAIGGSGSHEFHVIAETGEDAIVY-SPESDYAANIEAAEAL 239

Query: 241 DIISLNSIVEQWTA----PYAATSDVHNEKLFDSLPE 273
              +  S   +  A    P  A  +   E+L  +L  
Sbjct: 240 VPAAPRSPAAEPLAKTPTPGRAKCEAVAEQLGIALQR 276



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 68/172 (39%), Positives = 101/172 (58%), Gaps = 3/172 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    D  P+ K      RGIEVGH+F  GT+YS  MSATF   +GK   +
Sbjct: 382 PEAEVADLRNVVEGDPSPDGKGSLAICRGIEVGHVFMLGTRYSESMSATFLDENGKTQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +     +  R   ++++A 
Sbjct: 442 VMGCYGIGITRILGAAIEQNYDARGIIWPVSIAPFEVVICPVGYDRSEAVRAEADRLHAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           L   G DV  DD GE+ G  FA  +L+G P +V+VG + + + K+E++ R  
Sbjct: 502 LVAAGIDVILDDRGERPGVMFADWELIGVPFRVVVGERGLKEGKLELQGRRD 553


>gi|167630335|ref|YP_001680834.1| prolyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
 gi|226701294|sp|B0THP0|SYP_HELMI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167593075|gb|ABZ84823.1| prolyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
          Length = 575

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 119/323 (36%), Positives = 171/323 (52%), Gaps = 5/323 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F P L+E P +AE+ SH+L+LR G I + S G+Y +LPLGQ+ L  + AI+REE
Sbjct: 1   MRMSRLFAPTLREIPAEAEVISHQLLLRAGFIRRSSAGVYHYLPLGQRVLQRIMAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +P +Q A++W++SGR+  YG E+ RL DR+ +     PTHEE +TD+ ++
Sbjct: 61  MNAAGGQELLMPIIQPAEIWLQSGRWHVYGDELFRLKDRHQRDFCLSPTHEESITDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SYR+LP   Y I  K+RDE RPRFG+MR REF+MKD YSFD    G   SY KM+ +
Sbjct: 121 NVSSYRDLPMLLYHITNKYRDERRPRFGLMRGREFIMKDLYSFDRDEAGLHESYMKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y+ IF R GL   P+ A+ G IGG   SHEF+VLA++GE ++       D+   +E  + 
Sbjct: 181 YVNIFRRCGLTFRPVEADPGAIGGTGGSHEFMVLAESGEAEIVYCDAC-DYAANTEKAEC 239

Query: 240 D---DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                       VEQ   P   T +     L  +  +  +      +   +         
Sbjct: 240 KPQVTPGLPPLPVEQVATPDQKTIEEVCNFLKVAPADTIKTMVFRADDDLVMALIRGDRE 299

Query: 297 PMSATFKGADGKDHYVQMGSYGI 319
                 K   G            
Sbjct: 300 INEVKLKNLLGCLDLRMATEEEC 322



 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 105/189 (55%), Gaps = 2/189 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           AT+D+   +  +  P+       ARGIEVG +F  GTKYS  ++ TF    G+++ + MG
Sbjct: 379 ATADLRLVQAGEPCPQCGAPLKKARGIEVGQVFKLGTKYSKALNCTFLDEKGQENLMVMG 438

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG+G  R +AA IE +HD  GI+WP ++APF++ ++ +   D    +A E IY  L   
Sbjct: 439 CYGVGVSRTMAAAIEQNHDDNGIVWPMAIAPFQVLVVPVSNKDAAQMEAAEAIYKELIAK 498

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G D   DD  E+ G +F  ADL+G P+++ VG+K  SD  VE+K R  G +   S E+V+
Sbjct: 499 GVDTLLDDRPERAGVKFKDADLIGIPVRITVGNKLASDGVVEVKLRRGGEQFTASREDVV 558

Query: 436 NYASHRFSN 444
                    
Sbjct: 559 AQVQALIRE 567


>gi|268316191|ref|YP_003289910.1| threonyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
 gi|262333725|gb|ACY47522.1| threonyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
          Length = 662

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 139/443 (31%), Gaps = 38/443 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      +L L T    +   G+  WLP G    + +   +REEQ R G
Sbjct: 240 YLHRLEEARKRDHRRLGRELELFT-FSQKVGPGLPLWLPRGATLRETLINFLREEQIRRG 298

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHI 122
              +  P +   +L+  SG Y  Y               +  +  P +      I+    
Sbjct: 299 YQPVVTPHIARLELYKTSGHYPYYKDSQFPPMIENPETGEGYLLKPMNCPHHIMIYADRP 358

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP    +    +R E      G+ R R F + DA+ F    +     +  +    
Sbjct: 359 RSYRELPLRLAEFGQVYRYEQTGELSGLTRVRGFTIDDAHIFCRPDQVKDE-FKNVIDLT 417

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L +F  LG      +                       +     +  +    +      +
Sbjct: 418 LYVFRSLGFDEFEAQISLRD-------------PNNREKYVGDDELWEQAEQAIREAAAE 464

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +    +      A Y    D     + D+L    ++    ++                  
Sbjct: 465 MGLQATEELGEAAFYGPKLDFM---VRDALGRRWQLGTVQLDYILP--------ERFDLY 513

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + GAD + H    +     G++     V+     G   +W           + +      
Sbjct: 514 YIGADNQKHRPVMIHRAPFGSLERFIGVLIEHCAGNFPLW------LAPVQVAVLPLSDE 567

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  E +  RL + G  V  D   E IG +   A++   P  +IVG +      V ++ 
Sbjct: 568 LNDYAEAVGRRLLEAGFRVEVDTRTETIGYKIRQAEVQKIPYMLIVGRREREAGTVAVRK 627

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
              G +   +L+E I        
Sbjct: 628 HGEGDQGPATLDEFIERLRTEIE 650


>gi|187931727|ref|YP_001891712.1| threonyl-tRNA synthetase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|238691566|sp|B2SGS3|SYT_FRATM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187712636|gb|ACD30933.1| threonyl-tRNA synthetase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 634

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 144/442 (32%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L      + S GI  W   G +    V   +R   N+ G
Sbjct: 230 YLNMLEEAEKRDHRKIGKVLDLF--HFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG    Y + M       ++     P +      ++ + + SY
Sbjct: 288 CSEIRTPLIADFSLWQKSGHASKYAENMF-ATKSENRDFAIRPMNCPTCVQVYNTKLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R+E      G++R R F   D + F    +  +     +   +   
Sbjct: 347 RDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIFCTPEQVEEEVILMVQQCFEV- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++    P       E                   D          D    
Sbjct: 406 YKDFGFNDFAVKIALRPENRIGDDE-----------------TWDKSEQMLKNALDANNV 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              ++    A Y    + H   L D++  + +     ++       G        AT+  
Sbjct: 449 SYELLPGEGAFYGPKIEFH---LKDAIGRSWQCGTIQLDFSMPQRLG--------ATYID 497

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G+    V +    +G++     ++   + G   +W   V    + + N         D
Sbjct: 498 KNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLWLAPVQVAVMGISN------NQDD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C++++  L K G     D   E+IG +     LL  P  VI+G        + I+    
Sbjct: 552 YCKEVFIMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIRKHSG 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+++   +   +    
Sbjct: 612 EDLGQMSVDDFCAFLDKQIQAK 633


>gi|261822741|ref|YP_003260847.1| prolyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
 gi|261606754|gb|ACX89240.1| prolyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
          Length = 572

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLWVESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWVESGRWDQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQTTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L    ++A++G IGG+ SHEF VLA +GE  +       D+    E
Sbjct: 181 YSKIFSRMDLDFRAVQADTGSIGGNASHEFQVLATSGEDDIVF-STESDYAANIE 234



 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 70/187 (37%), Positives = 109/187 (58%), Gaps = 3/187 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF  G+KYS  + AT +G DG++  + MG 
Sbjct: 384 VADIRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGSKYSEALKATVQGEDGRNQTLTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD +GIIWPD++APF ++++ +  H     ++  E IY +L   
Sbjct: 444 YGIGVTRVVAAAIEQNHDERGIIWPDAIAPFHVAILPMNMHKSFRVKEVAEDIYQQLRAK 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G ++ +   E+I
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEIEYKNRRIGEKQMIKTGEII 563

Query: 436 NYASHRF 442
           ++     
Sbjct: 564 DFLLANI 570


>gi|193211793|ref|YP_001997746.1| threonyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
 gi|193085270|gb|ACF10546.1| threonyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 661

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 148/443 (33%), Gaps = 37/443 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      +L L   +  +   G+  WLP G    + +   ++ EQ + G + 
Sbjct: 249 RMEEARKRDHRKLGAELGLFM-LTPEVGSGLPIWLPNGAIIRNELETFLKAEQRKRGYVP 307

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML---RLADRNDKA--MIYGPTHEEVMTDIFRSHIK 123
           +  P + + +L+  SG Y  Y           D   +    +  P +      I+   ++
Sbjct: 308 VYTPHIGNIELYKRSGHYPYYSDSQFPPLTYKDETGREEQYLLKPMNCPHHHLIYSQTLR 367

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +    +R E      G++R+R F   D++ +    +              
Sbjct: 368 SYRDLPIRLTEFGTVYRHEQSGELNGLVRARGFTQDDSHIYCRPDQLVDE-ICNAIDLTR 426

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F+ LG   +  R                     +++   + +  +          D +
Sbjct: 427 FVFNTLGFDDVETRLSLHD-------------PENQSKYGGTAEVWEQAEKDVKEAADRM 473

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I     + Y    D     + D++    ++    ++                 ++
Sbjct: 474 GIKYFIGIGEASFYGPKIDFI---VRDAIGRKWQLGTVQVDYVMP--------ERFDLSY 522

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G+DG+ H   +              I    +     +P  +AP +++++ I    +   
Sbjct: 523 IGSDGQKHRPVVIHRAPFGSMER--FIGVLIEHTAGNFPLWLAPVQVAVLPIA---EDVH 577

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++YA+L   G     D   E+IG +   A++   P  +I+G       +V ++   
Sbjct: 578 DYAREVYAKLHAAGIRAELDLRSEKIGKKIREAEVSKIPAMLIIGRNEQEKGEVSLRRHR 637

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G      ++E+I          
Sbjct: 638 KGDEGSFGVDELIARLREEIDQR 660


>gi|260219598|emb|CBA26443.1| Threonyl-tRNA synthetase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 665

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 151/444 (34%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  L +L+E   RD      +L L    I +HS G   W P G      V   +R+    
Sbjct: 258 QQHLTMLEEAEKRDHRKLGRELDLF--HIDEHSPGTVFWHPKGWTLWQGVEQYMRKVYQD 315

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW ++G +D Y + M    +   +     P +      I++  IK
Sbjct: 316 NGYLEVKGPQIIDKSLWEKTGHWDKYRENMFT-TESEKRDYALKPMNCPGHILIYKQGIK 374

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +     R+E      G+MR R F   D + F  T +  +           
Sbjct: 375 SYRDLPLRFGEFGQCHRNEPSGGLHGIMRVRAFTQDDGHIFC-TEDQIQDEVKAFTTLLQ 433

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G  +I  +  + P     + E                   D    +        
Sbjct: 434 KVYKDFGFTNIIYKLSTRPEKRIGTEE-----------------GWDRAENALAEGLRAS 476

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                 +    A Y    +     L D+L    +     ++              + A F
Sbjct: 477 GCDFEYLPGEGAFYGPKIEY---TLKDALGRPWQCGTIQVDPNLP--------ERLDAEF 525

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG  H    +    +G++     ++    +      P  +AP +++++NI       
Sbjct: 526 VGEDGSRHRPVMLHRAIVGSLERFIGILI---EESAGALPAWLAPVQVAVLNIT---DAQ 579

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    +   L   G  V  D   E+I  +     +   P  V++G K ++   V ++ R
Sbjct: 580 ADYARSVAKTLQNQGLRVHLDLRNEKITYKIREHSMQKLPYLVVIGDKEMAAGAVAVRAR 639

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M LE  I   +   +N 
Sbjct: 640 GGQDLGAMPLESFIERITADIANK 663


>gi|124025364|ref|YP_001014480.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
 gi|166225477|sp|A2C155|SYT_PROM1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123960432|gb|ABM75215.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
          Length = 640

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 150/445 (33%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      KL L      + + G+  W P G      +   IRE  +
Sbjct: 228 LKEYINRIEEAEKRDHRKLGKKLSLF--HFQEEAPGMIFWHPNGWTIYRVLQDFIRETIS 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW +SG +D + ++M       +K     P +      +F   +
Sbjct: 286 KYDYQELKSPQIVCRSLWEKSGHWDKFKEDMFTTT-SENKEYAIKPMNCPCHVQVFNQGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F+  D + F    +  +          
Sbjct: 345 KSYRDLPIRLSEFGSCHRNEPSGALHGLMRVRNFVQDDGHIFCTNEQIQEE-VQSFIDLV 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G  SI ++  + P                      S D  D    + +   D 
Sbjct: 404 FEVYKAFGFNSILIKLSTRPEKR-----------------VGSDDVWDKSEKALSDALDS 446

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                S++    A Y    +     L D L    +     ++              ++++
Sbjct: 447 KGLDWSLLPGEGAFYGPKIEF---SLKDCLNRVWQCGTIQVDFSMP--------ERLNSS 495

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DGK      +    +G+      ++  ++ G   IW   +    + +         
Sbjct: 496 YIDVDGKKQPPVMLHRAILGSFERFIGILIENYSGNLPIWLCPLQIVVMGIT------DR 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             DAC    ++L K G     D   E++G +     +   P  +I+G K   ++++ ++ 
Sbjct: 550 NNDACLDTKSKLIKYGFRASVDTRNEKVGFKIREHTMQRIPFLIIIGDKEEENNEISVRT 609

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       M+L++         S  
Sbjct: 610 REGKDLGKMTLDKFKVIMDESISKK 634


>gi|325287305|ref|YP_004263095.1| threonyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
 gi|324322759|gb|ADY30224.1| threonyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
          Length = 647

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 151/436 (34%), Gaps = 36/436 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T    +   G+  WLP G    + +   +++ Q + G   +  P
Sbjct: 239 AKQRDHRKLGKELELFT-FSQKVGAGLPLWLPKGAALRERLENFLKKAQKKAGYEMVVTP 297

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG Y  YG++  +     + D+  +  P +     ++F     SY++LP 
Sbjct: 298 HIGQKELYVTSGHYAKYGEDSFQPIKTPKMDEEFLLKPMNCPHHCEVFNFKPHSYKDLPK 357

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +    +R E      G+ R R F   DA+ F  TP+     +  +    L + + LG
Sbjct: 358 RFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPDQLDQEFKNVIDLSLYVLNSLG 416

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +   +     +                 +   S +  +    +      +      I 
Sbjct: 417 FTNFKAQVSVRDLN-------------NPDKYIGSVENWEKAENAIINAAKEKGLDYVIE 463

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D     + D+L  N ++    ++                 T+KG+D +D
Sbjct: 464 SGEAAFYGPKLDFM---VKDALGRNWQLGTIQVDYNLP--------ERFDLTYKGSDNED 512

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H    +     G+M    A++     G   +W        + +       +      +K+
Sbjct: 513 HRPVMIHRAPFGSMERFIALLLEHTGGNFPLWLIPDQAIVLPV------SEKYEKYAKKV 566

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L         D+  E +G +   A++   P  +I+G    + + + ++         
Sbjct: 567 LNSLENDEIRALLDNRNETVGKKIREAEMNKIPFMIIIGENEEATNTISVRKHGGEDLGS 626

Query: 429 MSLEEVINYASHRFSN 444
           +S+++  +  +   ++
Sbjct: 627 ISIKDFSDLVTSEINS 642


>gi|257452295|ref|ZP_05617594.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|317058838|ref|ZP_07923323.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|313684514|gb|EFS21349.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
          Length = 637

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 80/439 (18%), Positives = 162/439 (36%), Gaps = 42/439 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL +++E   RD      +L L    + ++  G   +LP G    + +  + R E  + G
Sbjct: 230 FLRLMEEAEKRDHRKLGKELELF--FLSEYGPGFPFFLPKGMVLRNTLIDLWRAEHEKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +++  P + + +LW  SG + +Y + M   +  +D      P +       F+    SY
Sbjct: 288 YVQIDTPIMLNRELWEISGHWFNYRENMYTSS-IDDVDFAIKPMNCPGGVLAFKYQQHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++    R E      G+ R R F   D++ F +T E  +     +     + 
Sbjct: 347 RDLPARVAELGKVHRHEFSGALHGLFRVRAFTQDDSHIF-MTEEQIESEIIGVVNLIDKF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + +L      +   + P     + E    A+T                 +     + +  
Sbjct: 406 YSKLFGFQYSIELSTRPEKSIGTDEIWEKAET-----------------ALAGALNHLGR 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D    K+ D++    +     ++    F    ++      T+ G
Sbjct: 449 EFKINEGDGAFYGPKLDF---KIKDAIGRTWQCGTIQLD----FNLPERFD----VTYIG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++   + G   +W   V    +++      +  C  
Sbjct: 498 EDGEKHRPVMIHRVIYGSIERFIGILIEHYAGAFPMWLAPVQVKVLTI------NDECAP 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRL 422
             +++ A+L + G     DD  E IG +   A+     P+QVI+G   +   +V ++   
Sbjct: 552 YAKEVVAQLKEQGIRAELDDRSESIGYKIREANGRYKIPMQVIIGKNEIEKREVNVRRFG 611

Query: 423 TGIREDMSLEEVINYASHR 441
           +  +E M L+  +      
Sbjct: 612 SQAQESMELDAFLAMVKEE 630


>gi|71906284|ref|YP_283871.1| prolyl-tRNA synthetase [Dechloromonas aromatica RCB]
 gi|114152186|sp|Q47ID0|SYP_DECAR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71845905|gb|AAZ45401.1| Prolyl-tRNA synthetase, bacterial [Dechloromonas aromatica RCB]
          Length = 576

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 126/283 (44%), Positives = 169/283 (59%), Gaps = 1/283 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F   L+E P DAE+ S K+MLR G I + + GIY+W+PLG + L  V  I+REE
Sbjct: 1   MRTSQFFFTTLKEAPADAEVISQKMMLRAGYIKRAAAGIYTWMPLGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q A+LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGALELLMPAVQPAELWQESGRWEQYGPELLRFKDRHQREFVIGPTHEEVITDVVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE+RPRFGVMR REFLMKD YSF  + +  K  Y  M+ +
Sbjct: 121 DVKSYRQLPIHLYQIQTKFRDEIRPRFGVMRGREFLMKDGYSFHASFDDLKREYGNMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDF 239
           Y RIF RLGLK   + A++G IGG  SHEF VLAD+GE  + FC        +       
Sbjct: 181 YSRIFSRLGLKFRAVAADTGSIGGTGSHEFHVLADSGEDDIAFCPDSGYAANVELAEAMA 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            +     +                +   F  LP ++ V +  +
Sbjct: 241 PNEARAAASTLMEKTHTPGKMACADVAKFLELPLDRIVKSIAV 283



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 3/191 (1%)

Query: 255 PYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D+ P+   K    RGIEVGHIF    KY+  ++  +    GK   +
Sbjct: 383 PEPEVFDIRNVVAGDASPDGQGKLEILRGIEVGHIFQLRQKYAEALNCVYLDDSGKSQIM 442

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R+V A IE  +D KGII P ++APF++ ++ +     +  + + +++YA 
Sbjct: 443 EMGCYGIGVSRIVGAAIEQGNDDKGIILPPAIAPFEVCIVPMGYHKSEAVKASADQLYAD 502

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K+G DV  DD  E+ G  FA  +L+G P +V++G + + D   E K R+      ++ 
Sbjct: 503 LKKIGVDVVLDDRNERPGVMFADMELIGIPHRVVIGERGLKDGLFEYKSRIDAEPTMVAQ 562

Query: 432 EEVINYASHRF 442
            +++     + 
Sbjct: 563 TDIVTLLQGKL 573


>gi|325577191|ref|ZP_08147675.1| proline--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
 gi|325160773|gb|EGC72894.1| proline--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
          Length = 571

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 141/433 (32%), Positives = 202/433 (46%), Gaps = 49/433 (11%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P +A I SH+LMLR GMI   + G+Y+W+P G + L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPAEAAIVSHQLMLRAGMIRPLASGLYNWMPTGWRVLRKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA+E+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MDKSGALEIKMPVVQPAELWEESGRWEQYGPELLRFEDRGNRHFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EVSSYRQLPINLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHADHSSLQQTYEVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP------- 233
           Y  IF+RLGL    ++A++G IGG  SHEF VLA++GE  V       D+          
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLANSGEDDVIF-STESDYAANIELAEAV 239

Query: 234 -----------SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                       E  D  +  ++  +VEQ+  P   T      K       ++      +
Sbjct: 240 AIGERAAPTKAMELVDTPNAKTIAELVEQFNLPIEKTVKTLIVK-----GASEEQPLVAL 294

Query: 283 EVGHIFYFGTKYSLP-----MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            +          +           F         +  G   +G + +   VI        
Sbjct: 295 VIRGDHELNEIKAEKLPEVASPFEFADEAVIKAKIGAGVGSLGPVNLNIPVIIDRSVALV 354

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYA-------------RLSKVGCDV--FWD 382
             +            NI     V       I                L K G +V   + 
Sbjct: 355 SDFSAGANIDGKHYFNINWERDVALPKVADIRNVVEGDPSPDGKGTLLIKRGIEVGHIF- 413

Query: 383 DMGEQIGSQFAVA 395
               Q+G +++ A
Sbjct: 414 ----QLGKKYSEA 422



 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNINWERDVALPKVADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
           +AT +G DG+   V MG YGIG  RVVAA IE   D +  +   D +APF ++++ +   
Sbjct: 424 NATVQGEDGRPMVVTMGCYGIGVTRVVAAAIEQHFDERGIVWPTDEIAPFTVAVLPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  ++  E++Y  L   G +V +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQEYAEELYCTLQAQGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ E+++++   +  
Sbjct: 544 EYKNRRTGEKQMIAKEQLLDFLKGQIK 570


>gi|310779473|ref|YP_003967806.1| threonyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
 gi|309748796|gb|ADO83458.1| threonyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
          Length = 640

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 158/441 (35%), Gaps = 42/441 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L  L+E   RD      +L L    + ++  G   ++P G    + +  + R+E  +
Sbjct: 229 KAHLKFLEEAEKRDHRKIGKELGLF--FMSEYGPGFPFFMPKGMTIRNILIDLWRKEHTK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  ++  P + + +LW  SG + +Y + M   ++ ++      P +       ++  + 
Sbjct: 287 AGYEQIMTPIMLNKELWETSGHWYNYRENMYT-SEIDETEFAIKPMNCPGGVLAYKQEMH 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    ++    R E      G+MR R F   DA+ F +TPE  +     +     
Sbjct: 346 SYKDLPIRAGELGTVHRHEFSGALHGLMRVRSFTQDDAHIF-MTPEQIEDEIIGVIELID 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           + +  L      +   + P     S E                   +    +       +
Sbjct: 405 KFYSGLFGFEYNIELSTKPEKAIGSDE-----------------IWEKAESALEGAMKRL 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I     A Y    D    K+ D++    +     ++    F    ++       +
Sbjct: 448 GKEYKINPGDGAFYGPKLDF---KIKDAIGRTWQCGTIQLD----FNLPERFD----INY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H    +     G++     ++   + G   +W         + + I   +   
Sbjct: 497 IGEDGEKHRPVMIHRVVYGSIERFIGILIEHYAGAFPLW------IAPTQVKILTINDEV 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKH 420
               ++I A+L +       D   E IG +   A+     P+QVI+G   V++ +V ++ 
Sbjct: 551 VPYAKEIMAKLQEEEIRAEIDSRTESIGYKIREANGKFKVPVQVILGKDEVANREVNVRR 610

Query: 421 RLTGIREDMSLEEVINYASHR 441
             +  +E M L++ +      
Sbjct: 611 FGSKDQESMKLDDFVKMIKEE 631


>gi|134301672|ref|YP_001121640.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|166223343|sp|A4IX68|SYT_FRATW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|134049449|gb|ABO46520.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 634

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 144/442 (32%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L      + S GI  W   G +    V   +R   N+ G
Sbjct: 230 YLNMLEEAEKRDHRKIGKVLDLF--HFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG    Y + M       ++     P +      ++ + + SY
Sbjct: 288 CSEIRTPLIADFSLWQKSGHASKYAENMF-ATKSENRDFAIRPMNCPTCVQVYNTKLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R+E      G++R R F   D + F    +  +     +   +   
Sbjct: 347 RDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIFCTPEQVEEEVILMVQQCFEV- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++    P       E                   D          D    
Sbjct: 406 YKDFGFNDFAIKIALRPENRIGDDE-----------------TWDKSEQMLKNALDANNV 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              ++    A Y    + H   L D++  + +     ++       G        AT+  
Sbjct: 449 SYELLPGEGAFYGPKIEFH---LKDAIGRSWQCGTIQLDFSMPQRLG--------ATYID 497

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G+    V +    +G++     ++   + G   +W   V    + + N         D
Sbjct: 498 KNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLWLAPVQVAVMGISN------NQDD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C++++  L K G     D   E+IG +     LL  P  VI+G        + I+    
Sbjct: 552 YCKEVFIMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIRKHSG 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+++   +   +    
Sbjct: 612 EDLGQMSVDDFCAFLDKQIQAK 633


>gi|238021436|ref|ZP_04601862.1| hypothetical protein GCWU000324_01336 [Kingella oralis ATCC 51147]
 gi|237868416|gb|EEP69422.1| hypothetical protein GCWU000324_01336 [Kingella oralis ATCC 51147]
          Length = 611

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 126/239 (52%), Positives = 165/239 (69%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLMLR G+I  ++ G+Y+W+P+G + L  V AI+REE
Sbjct: 45  MKASQFFISTLKEAPAEAVLASHKLMLRAGLIKANASGLYTWMPMGLRVLRKVEAIVREE 104

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q ADLW ESGR+D YG E+LR+ DR+D A  + PT EE++TDI R 
Sbjct: 105 MNRAGAIELLMPVVQPADLWKESGRWDFYGDELLRITDRHDNAFCFSPTCEELITDIVRK 164

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE RPRFGVMR+REF+MKDAYSF    E  K +Y  M+ +
Sbjct: 165 EINSYKQLPKNFYHIQTKFRDERRPRFGVMRAREFVMKDAYSFHADFESLKATYQTMYDA 224

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y RIF+RLGL   P+ A++G IGG  SHEF VLAD+GE  +  S    D+    E    
Sbjct: 225 YCRIFNRLGLDYRPVAADTGSIGGTGSHEFQVLADSGEDVIAYSD-ASDYAANVELAQT 282



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 3/221 (1%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS--LPENKRVS 278
              +    +          DD            A      D+ N    D     +     
Sbjct: 388 KVYADFACEKGADWVIGANDDDHHYTGFNFGRDAAEPEFVDLRNVIAGDPSPCGKGSLKL 447

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KYS  ++A+F  ++GK   ++MG YGIG  R+VAA IE ++D +GI
Sbjct: 448 ARGIEVGHVFQLRDKYSAALNASFLDSNGKSQIMEMGCYGIGITRIVAAAIEQNNDERGI 507

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IW +++APF + ++ +        R+A ++IYA L   G DV  DD  E+ G     ++L
Sbjct: 508 IWTEAMAPFSVVIVPMNYKKSNSVREAADQIYADLQAAGVDVLLDDRDERAGVLLNDSEL 567

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           LG P ++++G + + +  VE   R +G    + L E++   
Sbjct: 568 LGIPHRIVIGDRALKEGNVEYAERRSGESISVPLNEIVAKI 608


>gi|56707928|ref|YP_169824.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670399|ref|YP_666956.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457008|ref|ZP_03665481.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370416|ref|ZP_04986421.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874733|ref|ZP_05247443.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|73919791|sp|Q5NGL8|SYT_FRATT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123063497|sp|Q14I20|SYT_FRAT1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56604420|emb|CAG45450.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320732|emb|CAL08833.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568659|gb|EDN34313.1| hypothetical protein FTBG_00181 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840732|gb|EET19168.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159111|gb|ADA78502.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 634

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 144/442 (32%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L      + S GI  W   G +    V   +R   N+ G
Sbjct: 230 YLNMLEEAEKRDHRKIGKVLDLF--HFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG    Y + M       ++     P +      ++ + + SY
Sbjct: 288 CSEIRTPLIADFSLWQKSGHASKYAENMF-ATKSENRDFAIRPMNCPTCVQVYNTKLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R+E      G++R R F   D + F    +  +     +   +   
Sbjct: 347 RDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIFCTPEQVEEEVILMVQQCFEV- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++    P       E                   D          D    
Sbjct: 406 YKDFGFNDFAVKIALRPENRIGDDE-----------------TWDKSEQMLKNALDANNV 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              ++    A Y    + H   L D++  + +     ++       G        AT+  
Sbjct: 449 SYELLPGEGAFYGPKIEFH---LKDAIGRSWQCGTIQLDFSMPQRLG--------ATYID 497

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G+    V +    +G++     ++   + G   +W   V    + + N         D
Sbjct: 498 KNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLWLAPVQVAVMGISN------NQDD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C++++  L K G     D   E+IG +     LL  P  VI+G        + I+    
Sbjct: 552 YCKEVFIMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIRKHSG 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+++   +   +    
Sbjct: 612 EDLGQMSVDDFCAFLDKQIQAK 633


>gi|227114059|ref|ZP_03827715.1| prolyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 572

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLWVESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWVESGRWDQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQVTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L    ++A++G IGG+ SHEF VLA +GE  +       D+    E
Sbjct: 181 YSKIFSRMDLDFRAVQADTGSIGGNASHEFQVLATSGEDDIVF-STESDYAANIE 234



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/187 (37%), Positives = 109/187 (58%), Gaps = 3/187 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF  G+KYS  + AT +G DG++  + MG 
Sbjct: 384 VADIRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGSKYSEALKATVQGEDGRNQTLTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD +GIIWPD++APF ++++ +  H     ++  E IY +L   
Sbjct: 444 YGIGVTRVVAAAIEQNHDERGIIWPDAIAPFHVAILPMNMHKSFRVKEVAEDIYQQLRAK 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + +   ++E K+R  G ++ +   E+I
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEIEYKNRRVGEKQMIKTSEII 563

Query: 436 NYASHRF 442
           ++     
Sbjct: 564 DFLLANI 570


>gi|54296718|ref|YP_123087.1| prolyl-tRNA synthetase [Legionella pneumophila str. Paris]
 gi|81822631|sp|Q5X756|SYP_LEGPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|53750503|emb|CAH11897.1| Prolyl-tRNA synthetase (Proline--tRNA ligase)(ProRS)(Global RNA
           synthesis factor) [Legionella pneumophila str. Paris]
          Length = 569

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 135/393 (34%), Positives = 200/393 (50%), Gaps = 11/393 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P DAEIASH+LMLR+GMI +   G+Y+W+PLG + L  V  I+REE
Sbjct: 1   MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMPLGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+T A+E+ +P++Q A+LW E+GR++++G ++L + D N +   +GPTHEEV+TDI R+
Sbjct: 61  MNKTHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQREYCFGPTHEEVITDIMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+ E  + +Y  M+ +
Sbjct: 121 ELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLSLESLQETYKDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GLK   + A++G IGG  SHEF VLA++GE  +F S          + T   
Sbjct: 181 YCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLAESGEDLIFYSDASDYAANIEQATSLK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF------GTKY 294
              +  +  E  T          +E        + +     I  G           G   
Sbjct: 241 PPKANQACNETITLVDTPNQKTIDEVASFLGIASNQTIKTLIVKGKEHPMVALVLRGDDE 300

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
              + AT                 +  ++     I        +I           +   
Sbjct: 301 LNEVKATKHPLVHSPLSFIDEELILKTLKTPLGSIGPIQLNIPVIVDHHALAMPSFVCGA 360

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
              D+   +A  +          D  +D    +
Sbjct: 361 NQADKHFINAAWE-----RDAKYDDAYDLRNVK 388



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 108/197 (54%), Gaps = 3/197 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A Y    D+ N K  D  P+ +      RGIEVGH+F  G KY+  M+A+     G+
Sbjct: 373 ERDAKYDDAYDLRNVKEGDQSPDGRGTLHCCRGIEVGHVFQLGDKYAKAMNASVINEQGQ 432

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              + MG YG+G  RVVAA IE  HD  GIIWP ++APF++++I +  A  Q  ++  E 
Sbjct: 433 LQTMIMGCYGLGITRVVAAAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSQTVKEQAES 492

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y +L   G DV  DD  E+ G  FA  DL+G P +++V  + +    +E K R +   +
Sbjct: 493 LYQQLKSHGIDVLLDDRNERAGVLFADNDLIGIPHRLVVSERNLEQGCIEYKSRTSSETQ 552

Query: 428 DMSLEEVINYASHRFSN 444
            ++L++V+N+     + 
Sbjct: 553 LINLDKVVNFIIELINK 569


>gi|307609489|emb|CBW98986.1| prolyl-tRNA synthetase [Legionella pneumophila 130b]
          Length = 569

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 136/393 (34%), Positives = 200/393 (50%), Gaps = 11/393 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P DAEIASH+LMLR+GMI +   G+Y+W+PLG + L  V  I+REE
Sbjct: 1   MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMPLGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+T A+E+ +P++Q A+LW E+GR++++G ++L + D N +   +GPTHEEV+TDI R+
Sbjct: 61  MNKTHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQREYCFGPTHEEVITDIMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+ E  + +Y  M+ +
Sbjct: 121 ELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLSLESLQETYKDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GLK   + A++G IGG  SHEF VLA++GE  +F S          + T   
Sbjct: 181 YCRIFDRMGLKYRAVEADTGAIGGSTSHEFQVLAESGEDLIFYSDASDYAANIEQATSLK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF------GTKY 294
              +  S  E  T          +E        + +     I  G           G   
Sbjct: 241 PPKANQSCNETITLVDTPNKKTIDEVASFLGIASNQTIKTLIVKGKEHPMVALVLRGDDE 300

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
              + AT                 +  ++     I        +I           +   
Sbjct: 301 LNEVKATKHPLVHSPLSFIDEELILKTLKTPLGSIGPVKLNIPVIVDHQALAMPSFVCGA 360

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
              D+   +A  +          D  +D    +
Sbjct: 361 NQADKHFINAAWE-----RDAKYDDAYDLRNVK 388



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 108/197 (54%), Gaps = 3/197 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A Y    D+ N K  D  P+ +      RGIEVGH+F  G KY+  M+A+     G+
Sbjct: 373 ERDAKYDDAYDLRNVKEGDPSPDGRGTLHCCRGIEVGHVFQLGDKYAKAMNASVINEQGQ 432

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              + MG YG+G  RVVAA IE  HD  GIIWP ++APF++++I +  A  Q  ++  E 
Sbjct: 433 LQTMIMGCYGLGITRVVAAAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSQAVKEQAES 492

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y +L   G DV  DD  E+ G  FA  DL+G P +++V  + +    +E K R +   +
Sbjct: 493 LYQQLKSHGIDVLLDDRNERAGVLFADNDLIGIPHRLVVSERNLEQGCIEYKSRTSSETQ 552

Query: 428 DMSLEEVINYASHRFSN 444
            ++L++V+N+     + 
Sbjct: 553 LINLDKVVNFIIELINK 569


>gi|71083144|ref|YP_265863.1| threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1062]
 gi|123734387|sp|Q4FNH9|SYT_PELUB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71062257|gb|AAZ21260.1| Threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 638

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 78/439 (17%), Positives = 147/439 (33%), Gaps = 39/439 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      ++ L      + S G   W   G K    + A +R  Q + 
Sbjct: 231 EYLKRIEEAEKRDHRKLGKEMDLF--HFREESPGSVFWHEKGWKLFQKLVAYMRARQEKA 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E++ P +    LW +SG ++ YG+ M      ++K     P +      +F   +KS
Sbjct: 289 GYKEVNTPEILDRSLWEKSGHWEKYGEHMYTSQTPDEKIFAIKPMNCPGHVQVFNQGLKS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R E      G++R R F   DA+ F    + +           L 
Sbjct: 349 YRDLPLRISEFGKVHRYEPSGALHGLLRVRAFTQDDAHIFCTEDQITSECLIVT-NLILD 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I+  LG + + ++    P                        +  D    +         
Sbjct: 408 IYKDLGFEDVILKYSDRPDLR-----------------VGDDNVWDKAEKALLDAVKASK 450

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +I +   A Y    +     L D++  + +     +++               A+F 
Sbjct: 451 LQYTINKGEGAFYGPKIEF---VLRDAIGRDWQCGTLQVDLNLPGRLD--------ASFV 499

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +     G++     ++  ++ GK   W           + +    +   
Sbjct: 500 DKDGTKKIPVMLHRALFGSLERFIGILIENYAGKFPFW------IAPLQVVVIPISEEFD 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  +++  G     D     +  +     L   PL +I G K V  + V I+   
Sbjct: 554 SYAKEVNEKINNAGISSEVDLKNHNLNYKIREHSLSKIPLLLICGKKEVDSNSVTIRRLD 613

Query: 423 TGIREDMSLEEVINYASHR 441
           T  +E+M L   +   S  
Sbjct: 614 TNKQENMELNLFLETFSAL 632


>gi|83589892|ref|YP_429901.1| prolyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
 gi|114152213|sp|Q2RJN1|SYP_MOOTA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|83572806|gb|ABC19358.1| prolyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
          Length = 573

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 116/245 (47%), Positives = 161/245 (65%), Gaps = 1/245 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+   P L+E P +AEI SH+L+LR G I + + GIY++LPLG++ L  +  IIREE
Sbjct: 1   MRASELLAPTLRETPAEAEIVSHQLLLRGGFIRKAAAGIYTYLPLGRRVLAKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q A+LW ESGR++ YG+EM RL DR+ +    GPTHEE++T + RS
Sbjct: 61  MDRAGGQEVVLPIIQPAELWQESGRWEVYGEEMFRLQDRHRRQFCLGPTHEEIITALVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE RPRFG++R REF+MKD YSFDL  EG   SY KM+ +
Sbjct: 121 EVTSYKQLPLLLYQIQNKYRDERRPRFGLLRGREFIMKDLYSFDLDQEGLNQSYRKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R GL   P++A+SG IGG+ SHEF+ LA  GE  +   ++  D+    E     
Sbjct: 181 YSNVFRRCGLDFRPVQADSGAIGGNYSHEFMALATAGEALLVYCREC-DYAANVEIAVAK 239

Query: 241 DIISL 245
            +  +
Sbjct: 240 ALPMI 244



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/188 (35%), Positives = 103/188 (54%), Gaps = 2/188 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A  D+   +  +  P+       ARGIEVG +F  GTKYS  + A +  A G++H + MG
Sbjct: 379 AVVDIRQVEAGEPCPQCGAPLAQARGIEVGQVFQLGTKYSGALGANYTDARGQEHPIVMG 438

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R +AA++E  HD +GIIWP SVAP+++ +I     D   R   E +Y  L+  
Sbjct: 439 CYGIGVSRTMAAIVEQCHDDQGIIWPLSVAPYQVVIIPASLKDDGQRQVAEGLYRELAAA 498

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V +DD  E+ G +F  ADL+G+PL++ VG + ++   V++K R       + LE + 
Sbjct: 499 GVEVVYDDRDERAGLKFVEADLIGYPLRITVGKRTITSGTVDVKWRSRKEETPLPLEGLS 558

Query: 436 NYASHRFS 443
                  +
Sbjct: 559 AQIQALLA 566


>gi|227537393|ref|ZP_03967442.1| threonine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242771|gb|EEI92786.1| threonine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 641

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 151/444 (34%), Gaps = 36/444 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   I +   RD      +L L      +   G+  WLP G      +   ++  Q 
Sbjct: 228 LTDYLKFIEEAKKRDHRKLGKELELFA-FSEKVGMGLPLWLPKGAALRQKLIDFMQRAQL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G   +  P +    L+V SG Y+ YG++  +        +     P +     +I+++
Sbjct: 287 KAGYEPVVTPHIGHKQLYVTSGHYEKYGEDSFQPIKTPVEGEEFFLKPMNCPHHCEIYKT 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + K+  
Sbjct: 347 KPRSYKDLPVRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFCR-PDQVKEEFKKVID 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG +    +                  D      +   D           + 
Sbjct: 406 LVLYVFGALGFEDYIAQVSLR--------------DPENRTKYIGSDENWVLAERAIIEA 451

Query: 240 DDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            D   L ++VE    A Y    D     + D+L    ++    ++      F  +Y+   
Sbjct: 452 ADEKGLPTVVEYGEAAFYGPKLDFM---VKDALGRKWQLGTIQVDYNLPERFELEYTGSD 508

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A           V +     G++    AV+     G+  +W        + +       
Sbjct: 509 NAK-------HRPVMIHRAPFGSLERFIAVLIEHCAGRFPLWLAPEQFIVLPV------S 555

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   +  +K+   L+        D   E++G +   A++   P  +IVG K      V +
Sbjct: 556 EKYEEYAQKLLESLNNSDIRGLIDLRDEKVGRKIRDAEVKKLPYMLIVGEKEAESGTVSV 615

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           +   +G    M+ EE         
Sbjct: 616 RKHGSGDVGSMTPEEFREVLIKEI 639


>gi|89895282|ref|YP_518769.1| hypothetical protein DSY2536 [Desulfitobacterium hafniense Y51]
 gi|114152191|sp|Q24UG7|SYP_DESHY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|89334730|dbj|BAE84325.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 575

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 126/398 (31%), Positives = 186/398 (46%), Gaps = 15/398 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+   P L+E P +AE+ SH+L++R G+I + + GIY++LPLG + L  +  I+REE
Sbjct: 1   MRVSQILNPTLREVPAEAEVVSHQLLVRAGLIRKSAAGIYTYLPLGLRVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A+LW ESGR+D YG+E++RL DR+++    GPTHEE++TD+ R 
Sbjct: 61  MDAKGGQEVLLPIIQPAELWRESGRWDLYGQELMRLNDRHNREFCLGPTHEEIITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP   YQIQ K+RDE RPRFG+MR REF+MKD YSFD    G   SY KM+ +
Sbjct: 121 EIRSYKQLPLLLYQIQNKYRDERRPRFGLMRGREFIMKDLYSFDRDEAGLAESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y RIF R GL   P+ A+     G   +HEF+VLA++GE  V    D  D+    E    
Sbjct: 181 YTRIFTRCGLSFRPVEADAGAIGGTGGTHEFMVLAESGEAAVVYCPDC-DYAANVEKA-- 237

Query: 240 DDIISLNSIVEQWTAPY-------AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +       V+     Y         T +   E L  S  +  +      +   I     
Sbjct: 238 -ECKPAPMAVDAPIGAYRSVDTPGTKTIEQVAEFLKVSKSDLVKSLLYQGDDKLILVLVR 296

Query: 293 KYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                       A G    +Q  G   +                   +   +     +  
Sbjct: 297 GDREINEIKVNNALGPFINLQLAGPEAVLEKLGCEPGYVGPIGAPKNLTVVADLEVPLMA 356

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
             +   +   +   + +         D   D      G
Sbjct: 357 KAVCGANAEDKHYVDAVPE--KDFRIDQILDLRMVNAG 392



 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/186 (36%), Positives = 104/186 (55%), Gaps = 2/186 (1%)

Query: 261 DVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+      +  P+       ARGIEVG +F  GTKYS  ++A F   +G +H   MG YG
Sbjct: 385 DLRMVNAGEPCPQCGSPLKEARGIEVGQVFKLGTKYSKALNAVFLDENGAEHPCVMGCYG 444

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R +AA IE ++D  GIIWP  +AP+ + ++ +   D   R+  E +Y  L K+G +
Sbjct: 445 IGVSRTMAAAIEQNNDKDGIIWPIPIAPYHVIVVPVNMKDDQVRETGEALYQELLKLGVE 504

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              DD  E+ G +F  ADL+G+PL+V VGSK +++ +VE++ R TG  + + +EE+    
Sbjct: 505 AVLDDRDERPGVKFKDADLVGYPLRVTVGSKTLANGEVELRDRKTGEVQLVKVEELAGRI 564

Query: 439 SHRFSN 444
                 
Sbjct: 565 QGMIRE 570


>gi|126650283|ref|ZP_01722511.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126592933|gb|EAZ86915.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 637

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 151/442 (34%), Gaps = 43/442 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +YF+ + +   R+      +L L   M  + + G+  +L  GQ   + + + +R  Q + 
Sbjct: 232 QYFVFLDEAEKRNHRKLGKELSLF--MFSEEAPGMPFYLANGQILRNELESYLRNLQAKY 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + +  LW +SG +D Y   M      +D++    P +      IF++ + S
Sbjct: 290 DYREVRTPLMMNQRLWEQSGHWDHYKDNM-YFTQVDDQSFALKPMNCPGHMLIFKNSLHS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R E      G++R R F   DA+ F  TP+  ++           
Sbjct: 349 YRDLPIRMAEFGQVHRHEFSGALNGLLRVRSFCQDDAHIF-ATPQQIENEIALALKIIDE 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +++  G +                    V   T            D    +      ++ 
Sbjct: 408 VYNVFGFQYS------------------VELSTRPDDYMGELSLWDQAEEALENVLTNLG 449

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +I E   A Y    D+H   + D++  + + +   ++    F    K+      T+ 
Sbjct: 450 IDYTINEGDGAFYGPKIDIH---IKDAIQRSHQCATVQLD----FQLPEKFD----LTYI 498

Query: 304 GADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               +     +    +     R +  +IE       I                       
Sbjct: 499 NEHNEKVRPVVIHRAVFGSIDRFLGILIEHFGGAFPIWLAPQQVQVIAVA-------DAH 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +D  +++   L      V  DD  E++G +   A L   P  +++G +  +   V ++  
Sbjct: 552 QDYAKQVVKALQHEQIRVQLDDRQEKLGKKIREAQLHKIPYILVIGDRETAHQNVSVRRH 611

Query: 422 LTGIREDMSLEEVINYASHRFS 443
                 + S+ ++I   +    
Sbjct: 612 GQQATVEYSISQLIEEMTEAIK 633


>gi|187251094|ref|YP_001875576.1| prolyl-tRNA synthetase [Elusimicrobium minutum Pei191]
 gi|226701286|sp|B2KCB2|SYP_ELUMP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|186971254|gb|ACC98239.1| Prolyl-tRNA synthetase [Elusimicrobium minutum Pei191]
          Length = 573

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 117/264 (44%), Positives = 157/264 (59%), Gaps = 3/264 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++Y+LP L+E P+DA+  S KLMLR G+I + + GIY WLPLG K L  V  I+REE
Sbjct: 1   MKLTQYYLPTLKEAPKDADTISAKLMLRAGLIRKTASGIYEWLPLGLKVLKKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +Q  +LW ESGR+  YGKE+LR+ DR      + PT EEV+TD+ R 
Sbjct: 61  MDAAGAHEVWLPLIQPKELWEESGRWTYYGKELLRIKDRKGAEFCFAPTAEEVITDVVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQ   KFRDE+RPRFGVMR+REF MKDAYSF  T E     Y K F +
Sbjct: 121 DVTSYKQLPVALYQFASKFRDEIRPRFGVMRAREFYMKDAYSFHATEESINEWYLKFFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y ++  R G K   + A++G IGG+ SHEF+VLADTGE ++                   
Sbjct: 181 YKKVCTRCGFKFKAVEADTGAIGGNFSHEFMVLADTGENEIADCDCGYAANTEKAEIFKP 240

Query: 241 DIISLN---SIVEQWTAPYAATSD 261
              +       +E+   P A T +
Sbjct: 241 KFPAAKEELKTIEKVNTPNATTIE 264



 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/184 (36%), Positives = 96/184 (52%), Gaps = 3/184 (1%)

Query: 260 SDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+      D   +  +     RGIEVGH F  GTKYS  M A F   + K H   MG Y
Sbjct: 385 ADLKIASEGDLCGKCGKKFNFTRGIEVGHTFKLGTKYSQSMKAEFLDENQKSHPFLMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVG 376
           GIG  R+VAA IE SHD  GIIWP  +APF I L++I    +   ++  + IY +L++ G
Sbjct: 445 GIGISRIVAAAIEQSHDENGIIWPAPLAPFDIYLVSIDTDINPKVKEETDSIYNQLTQAG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G +F  ADL+G P ++++ S+ V   + E K R +       L ++  
Sbjct: 505 LNVLLDDRNERPGIKFKDADLIGLPHRIVISSRTVETGEYEYKQRTSKEAIRRKLADISE 564

Query: 437 YASH 440
               
Sbjct: 565 QIKE 568


>gi|242242946|ref|ZP_04797391.1| threonyl-tRNA synthetase [Staphylococcus epidermidis W23144]
 gi|242233547|gb|EES35859.1| threonyl-tRNA synthetase [Staphylococcus epidermidis W23144]
          Length = 645

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 151/444 (34%), Gaps = 31/444 (6%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLKMLEERRERDHRKIGKDLELFTNN-QLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++   M+  P +      I+++  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPAMKLDEDEAMVLRPMNCPHHMMIYKNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++     
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIQ 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G +    R            +     D  E          +          D++
Sbjct: 408 DVYKDFGFEDYRFRLS-----YRDPEDKHKYFDDDEM--------WEKAESMLKEASDEL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    DV   ++  ++ + + +S   ++    F    ++      T+
Sbjct: 455 GLTYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERFD----LTY 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG+ H   +   G+ +         +           +    +I  +N+  H     
Sbjct: 504 IGQDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPMQVEIIPVNVDLH----Y 559

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D    +   L   G  V  DD  E++G +   A +   P Q++VG K V + +V ++   
Sbjct: 560 DYARLLQDELKSQGVRVEIDDRNEKMGYKIREAQMKKIPYQIVVGDKEVENQEVNVRKYG 619

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           +  +E +  +E I          +
Sbjct: 620 SEKQESVEKDEFIWNVIDEIRLKK 643


>gi|301155393|emb|CBW14859.1| prolyl-tRNA synthetase [Haemophilus parainfluenzae T3T1]
          Length = 571

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 141/433 (32%), Positives = 203/433 (46%), Gaps = 49/433 (11%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P +A I SH+LMLR GMI   + G+Y+W+P G + L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPAEAAIVSHQLMLRAGMIRPLASGLYNWMPTGWRVLRKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA+E+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MDKSGALEIKMPVVQPAELWEESGRWEQYGPELLRFEDRGNRHFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EVSSYRQLPINLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHADHASLQQTYDVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP------- 233
           Y  IF+RLGL    ++A++G IGG  SHEF VLA++GE  V       D+          
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLANSGEDDVIF-STESDYAANIELAEAV 239

Query: 234 -----------SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                       E  D  +  ++  +VEQ+  P   T      K       ++      +
Sbjct: 240 AIGERAAPTKAMELVDTPNAKTIAELVEQFNLPIEKTVKTLIVK-----GASEEQPLVAL 294

Query: 283 EVGHIFYFGTKYSLP-----MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            +          +           F         +  G   +G + +   VI        
Sbjct: 295 VIRGDHELNEIKAEKLPEVASPFEFADEAVIKAKIGAGVGSLGPVNLNIPVIIDRSVALV 354

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYA-------------RLSKVGCDV--FWD 382
             +            NI     V       I                L K G +V   + 
Sbjct: 355 SDFSAGANIDGKHYFNINWERDVALPKVADIRNVVEGDPSPDGKGTLLIKRGIEVGHIF- 413

Query: 383 DMGEQIGSQFAVA 395
               Q+G +++ A
Sbjct: 414 ----QLGKKYSEA 422



 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNINWERDVALPKVADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
           +AT +G DG+   V MG YGIG  RVVAA IE   D +  +   D +APF ++++ +   
Sbjct: 424 NATVQGEDGRPMVVTMGCYGIGVTRVVAAAIEQHFDERGIVWPTDEIAPFTVAVVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  ++  E++Y  L   G +V +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQEYAEELYRTLQAQGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++++   +  
Sbjct: 544 EYKNRRTGEKQMIAKDQLLDFLKGQIK 570


>gi|220904224|ref|YP_002479536.1| prolyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254782896|sp|B8IZD1|SYP_DESDA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219868523|gb|ACL48858.1| prolyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 574

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 117/237 (49%), Positives = 165/237 (69%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  ++P L+E+P DAE+ SHKL+LR GM+ + + G+Y +LPLG + ++ +   +REE
Sbjct: 1   MRFSSCYIPTLKESPADAEVISHKLLLRAGMVRRLTSGLYIYLPLGLRVINKIARTVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+ +P +Q  DLW E+GR++ YGKE+LR  DRN++    GPTHEEV+TD+ R 
Sbjct: 61  MEKAGFRELLMPMVQPGDLWKETGRWEHYGKELLRFKDRNEREYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKD YSFD T EG++ SY  M+ +
Sbjct: 121 EVRSYRQLPVRLYQVQTKFRDEIRPRFGLMRGREFMMKDGYSFDATAEGAEESYKIMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y+ IF RLGL+   + A++G IGG+ SHEF+VLADTGE  +    D  ++    E  
Sbjct: 181 YMSIFSRLGLRFRAVEADTGSIGGNFSHEFMVLADTGEDTIAFCHDC-EYAANVERA 236



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 75/184 (40%), Positives = 101/184 (54%), Gaps = 2/184 (1%)

Query: 253 TAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A   A +D+      D  P    +    RGIEVGHIF  G KYS  M A F   +GK+ 
Sbjct: 373 DAAVTAWADLRAITADDQCPRCGGRMELTRGIEVGHIFMLGLKYSEAMHAVFLDENGKER 432

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MG YGIG  RV AA IE +HD  GI++P  VAPF+  L+N+    +      E+IYA
Sbjct: 433 TMIMGCYGIGVSRVAAAAIEQNHDEHGIVFPPPVAPFECVLLNLDPRSEEVNAKVEEIYA 492

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L  +G +V  DD  E+ G +F  ADLLG P+Q++VG K +    VE K R TG + ++S
Sbjct: 493 LLQGMGIEVLLDDREERPGVKFKDADLLGIPMQLVVGGKGLGRGIVECKDRRTGEKGELS 552

Query: 431 LEEV 434
              +
Sbjct: 553 AASL 556


>gi|119899055|ref|YP_934268.1| prolyl-tRNA synthetase [Azoarcus sp. BH72]
 gi|152074747|sp|A1K976|SYP_AZOSB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119671468|emb|CAL95381.1| unnamed protein product [Azoarcus sp. BH72]
          Length = 581

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 131/259 (50%), Positives = 171/259 (66%), Gaps = 4/259 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR  ++F+  L+E P DAE+ S KLMLR GMI + + GIY++LP+G K++  V  IIREE
Sbjct: 1   MRARQFFISTLKEAPADAEVVSQKLMLRAGMIRKVAAGIYNYLPMGLKSIRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q ++LW E+GR+D  G EMLR  DR+++     PT EEV+TDI R 
Sbjct: 61  MNRAGALELTMPLVQPSELWQETGRWDKMGPEMLRFKDRHERDFALQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQIQ KFRDE RPRFGVMR REF MKDAYSFD + E +  SY+ M+ +
Sbjct: 121 ELKSYRQLPKNFYQIQTKFRDERRPRFGVMRGREFTMKDAYSFDRSAEAAGESYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    + A++G IGGD SHEF V+ADTGE  +    D         N +  
Sbjct: 181 YSRIFDRLGLTYRAVAADTGAIGGDRSHEFQVIADTGEDAIVYCPDSSYAA----NIELA 236

Query: 241 DIISLNSIVEQWTAPYAAT 259
           + +SL       +AP A T
Sbjct: 237 EALSLLPARAGASAPLAKT 255



 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 104/188 (55%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGH+FY GTKYS  M+ATF   DGK  + +MG 
Sbjct: 393 VADIRNVVEGDPSPDGKGKLAIQRGIEVGHVFYLGTKYSKAMNATFLDVDGKPKHFEMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R++ A IE +HD +GIIWP S+APF++ +  +  +  +  RD  +K+Y  L   
Sbjct: 453 YGIGVTRILGAAIEQNHDERGIIWPASIAPFEVVICPVGWSKSEAVRDEAQKLYDALVAA 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P +V +G + + +   E + R       +++ E+ 
Sbjct: 513 GVDVILDDRDERPGVMFADWELIGVPHRVTIGDRGLKEGVAEYQGRRDPEASRVAVAEIA 572

Query: 436 NYASHRFS 443
            +   R  
Sbjct: 573 PHLISRLR 580


>gi|300772848|ref|ZP_07082717.1| threonine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300759019|gb|EFK55846.1| threonine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 641

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 151/444 (34%), Gaps = 36/444 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   I +   RD      +L L      +   G+  WLP G      +   ++  Q 
Sbjct: 228 LTDYLKFIEEAKKRDHRKLGKELELFA-FSEKVGMGLPLWLPKGAALRQKLIDFMQRAQL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G   +  P +    L+V SG Y+ YG++  +        +     P +     +I+++
Sbjct: 287 KAGYEPVVTPHIGHKQLYVTSGHYEKYGEDSFQPIKTPVEGEEFFLKPMNCPHHCEIYKT 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + K+  
Sbjct: 347 KPRSYKDLPVRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFCR-PDQVKEEFKKVID 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG +    +                  D      +   D           + 
Sbjct: 406 LVLYVFGALGFEDYIAQVSLR--------------DPENRTKYIGSDENWALAERAIIEA 451

Query: 240 DDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            D   L ++VE    A Y    D     + D+L    ++    ++      F  +Y+   
Sbjct: 452 ADEKGLPTVVEYGEAAFYGPKLDFM---VKDALGRKWQLGTIQVDYNLPERFELEYTGSD 508

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A           V +     G++    AV+     G+  +W        + +       
Sbjct: 509 NAK-------HRPVMIHRAPFGSLERFIAVLIEHCAGRFPLWLAPEQFIVLPV------S 555

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   +  +K+   L+        D   E++G +   A++   P  +IVG K      V +
Sbjct: 556 EKYEEYAQKLLESLNNSDIRGLIDLRDEKVGRKIRDAEVKKLPYMLIVGEKEAESGTVSV 615

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           +   +G    M+ EE         
Sbjct: 616 RKHGSGDVGSMTPEEFREVLIKEI 639


>gi|254489788|ref|ZP_05102983.1| threonyl-tRNA synthetase [Methylophaga thiooxidans DMS010]
 gi|224464873|gb|EEF81127.1| threonyl-tRNA synthetase [Methylophaga thiooxydans DMS010]
          Length = 673

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 150/444 (33%), Gaps = 41/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L      + + G   W   G + L  + A +R  Q + G
Sbjct: 242 YLHQMEEAEKRDHRRLGKQLDLF--HFQEEAPGSVFWHHKGWQILQELIAYLRRRQQQEG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            IE++ P +    LW  SG + +Y   M      + +     P +      ++R ++ SY
Sbjct: 300 YIEVNSPDVMDRSLWETSGHWQNYRDHMFTTETADGRFFALKPMNCPGSVLLYRQNLTSY 359

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G++R R F   DA+ +  T    +          L +
Sbjct: 360 RDLPIRMSEFGKVHRYEPSGTLHGLLRVRHFTQDDAHIYC-TQSQMQDECMSAIRFILDV 418

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + +LG   I ++  + P     + E                   D    +     +++  
Sbjct: 419 YDQLGFHDIKIKLSTRPEHRIGTDE-----------------TWDLLEETLIESLNELKL 461

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D++  + +     +++                 +  
Sbjct: 462 DYQTNPGEGAFYGPKLEF---VLQDAIKRDWQCGTLQVDMNLP--------ERFDLDYVD 510

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G K   V +     G++     ++   ++GK  +W           + I A       
Sbjct: 511 NNGLKQRPVMLHRALFGSLERFIGILLEHYEGKLPVW------LMPIQLVICAISDANAT 564

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++   L   G  V  D   E+IG +     L   P   + G K  + + + I+ +  
Sbjct: 565 YVEQLATVLRYHGLRVSTDTRSEKIGYKIRQHTLQRIPYIAVAGDKEQASNTLSIRQQNG 624

Query: 424 GIREDMSLEEVINYASHRFSNNRP 447
                +S++E IN  S   +  +P
Sbjct: 625 DTMGSLSIKETINTLSE--AAQKP 646


>gi|269216980|ref|ZP_06160834.1| threonine--tRNA ligase [Slackia exigua ATCC 700122]
 gi|269129787|gb|EEZ60871.1| threonine--tRNA ligase [Slackia exigua ATCC 700122]
          Length = 587

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 141/438 (32%), Gaps = 43/438 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      ++ L   M+     G   WLP G +  +++     + Q+  G  ++  
Sbjct: 189 EAEKRDHRRIGREMELF--MMADEGPGFPFWLPNGMRLKNSLMQYWMDMQDAYGYEQVDT 246

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + +  LW  SG +D Y + M    + + +     P +      I++S  +SYR+LP  
Sbjct: 247 PIILNKSLWETSGHWDHYKENMYT-TEIDGEEYAVKPMNCPGACLIYKSKPRSYRDLPLK 305

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             +     R EL+    G+ R R F   DA+   + P+                + + G 
Sbjct: 306 LAEAGKDHRHELKGALHGLFRVRAFTQDDAH-LFIRPDQITEQVTDTAHLISTYYEQFGF 364

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +   + P     S E                   +          + +     + E
Sbjct: 365 PY-RVELSTRPEDSMGSDE-----------------DWELAEAGLRAALEAMGVDYILNE 406

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D H   L D L    +     ++    F             +  ADG   
Sbjct: 407 GDGAFYGPKIDFH---LQDCLGRTWQCGTIQLD----FQLPQ----NFELEYTDADGMKK 455

Query: 311 YV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +   G G+      ++   + GK   W           + +    +  R+    +Y
Sbjct: 456 RPIMIHRAGFGSFERFIGMLTEQYAGKFPTW------LSPCQVKVLPVSEKHREYARGVY 509

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             L   G     D+  E+IG +   A  +   P  +I+G K  +   + ++ R +    +
Sbjct: 510 DALRAAGIRAKLDERDEKIGYKIREARGIDRVPYMLILGEKEENAGNISVRDR-SNETVE 568

Query: 429 MSLEEVINYASHRFSNNR 446
             L E I   +      R
Sbjct: 569 RDLGEFIADVTAEIEERR 586


>gi|328954064|ref|YP_004371398.1| Prolyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
 gi|328454388|gb|AEB10217.1| Prolyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
          Length = 573

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 123/237 (51%), Positives = 158/237 (66%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK  LP L+E P +AE  SH+L+LR GMI + + GIY +LPLG   L  V AI+REE
Sbjct: 1   MYYSKMLLPTLKETPAEAETVSHQLLLRAGMIRKLTSGIYDYLPLGLMVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+ +P +Q A+LW ESGR+  YGKE+LR  DR+D+   +GPTHEEV+TD+ R 
Sbjct: 61  MNCAGAQELLLPAVQPAELWQESGRWQIYGKELLRFQDRHDRDYCFGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFG++R REF+MKD YSFD+   G+  +Y  M+ +
Sbjct: 121 EVHSYRQLPLNLYQIQTKFRDEIRPRFGLIRGREFIMKDGYSFDIDEAGADQTYRAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL+   + A+SGPIGG  SHEF+VLA+TGE  V        +    E  
Sbjct: 181 YTRIFSRCGLRFKTVEADSGPIGGSFSHEFMVLAETGEDVVVSCTACA-YAANLEKA 236



 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 2/188 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+      D  P         RGIEVGH+F  G KYS  + ATF    G++ Y+ MG
Sbjct: 379 GFADLRQASNSDPCPRCGAALEFLRGIEVGHVFKLGYKYSKALKATFLDDQGREQYMFMG 438

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+VAA IE +HD  GII+P  +APF++ L+ I A+D        ++Y  +   
Sbjct: 439 CYGIGVSRIVAAAIEQNHDLDGIIFPMPLAPFQVLLVPIAANDVDTMAVASRLYQEIRAA 498

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V +DD  E+ G +F   DLLG P++V++G K ++    E++ R +   + + L  ++
Sbjct: 499 GIEVLFDDRNERPGIKFKDGDLLGIPVRVVLGPKTLAQGAAEVRQRRSRAVQLIPLASLV 558

Query: 436 NYASHRFS 443
            Y      
Sbjct: 559 AYLQDHIQ 566


>gi|157375257|ref|YP_001473857.1| threonyl-tRNA synthetase [Shewanella sediminis HAW-EB3]
 gi|189083624|sp|A8FV56|SYT_SHESH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157317631|gb|ABV36729.1| threonyl-tRNA synthetase [Shewanella sediminis HAW-EB3]
          Length = 642

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 141/439 (32%), Gaps = 40/439 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + + + G+  W   G      +   IR++  +   
Sbjct: 233 LNRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSLFLELEKFIRQKLGQYTY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M    +  ++     P +      IF   +KSYR
Sbjct: 291 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TNSENREYAIKPMNCPGHVQIFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +   +         +
Sbjct: 350 DLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHVFC-TEDQVQQEVSACIKMVYDTY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G K I ++  + P                        D  D    +           
Sbjct: 409 ETFGFKDIVVKLSTRPEKR-----------------IGDDDMWDRSEEALKQALTANGIA 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I+    A Y    +     L D L    +     ++       G        AT+   
Sbjct: 452 YEILPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPGRLG--------ATYVAE 500

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D        +    +G++     ++   + GK   W   +    +++           D 
Sbjct: 501 DNSRQTPVMIHRAILGSLERFLGILIEEYAGKFPTWLAPMQVVVMNIT------DKQSDY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++     + G     D   E+IG +     L   P  ++VG + + + +V ++ R   
Sbjct: 555 VDEVVNIFKESGIRASKDLRNEKIGFKIREHTLRRVPYLLVVGDQEMDNKEVAVRTRDGV 614

Query: 425 IREDMSLEEVINYASHRFS 443
               M +E+  +  + + S
Sbjct: 615 DLGKMRIEDFASKINEQIS 633


>gi|229823243|ref|ZP_04449312.1| hypothetical protein GCWU000282_00541 [Catonella morbi ATCC 51271]
 gi|229787409|gb|EEP23523.1| hypothetical protein GCWU000282_00541 [Catonella morbi ATCC 51271]
          Length = 647

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 170/444 (38%), Gaps = 36/444 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           FL + QE   RD      +L +   M+  +   G+  WLP G      +   I +++   
Sbjct: 231 FLRLRQEAKERDHRKLGKELGIF--MVSKEVGSGLPFWLPKGATIRRVIERYIMDKEISL 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   DL+  SG +  Y  +M    D  D  M +  P +      I+++ I 
Sbjct: 289 GYDHVYTPIMAKVDLYQTSGHWAHYKDDMFPPMDMGDGEMLVLRPMNCPHHMMIYKNDIH 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP    ++ +  R E      G+ R RE  + DA+ F   P+  K  + ++     
Sbjct: 349 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDAHIFVR-PDQIKEEFIRVLDLIK 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDD 241
            ++H  G+     R                  D    + +   D M     +      D+
Sbjct: 408 AVYHDFGITDYRFRLS--------------YRDPENKEKYFDDDAMWEKAQAMLKEAMDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    D+   +   ++   + +S   ++    F    ++      T
Sbjct: 454 LGLDYFEAIGEAAFYGPKLDI---QFKTAIGLEETMSTIQLD----FLLPERFD----LT 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G DG+D++  +  +  G +  +   +    +     +P  +AP +++L+ +    +  
Sbjct: 503 YVGEDGQDNHRPVVIHR-GVVSTMERFVAYLIEEYKGAFPTWLAPVQVALLPVSL--EAH 559

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  ++IY  L   G  V  D   E++G +   A     P Q+++G + VS+  V ++H 
Sbjct: 560 SDRVQEIYEDLKAKGFRVDMDLRNEKLGYKIRSAQTAKIPYQIVIGDQEVSEGTVNVRHY 619

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +   E  S ++ +   S   +N 
Sbjct: 620 GSAKSESYSYDDFVRLLSEDVANK 643


>gi|319400998|gb|EFV89217.1| threonyl-tRNA synthetase [Staphylococcus epidermidis FRI909]
          Length = 645

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 151/444 (34%), Gaps = 31/444 (6%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLKMLEERRERDHRKIGKDLELFTNN-QLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++   M+  P +      I+++  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPAMKLDEDEAMVLRPMNCPHHMMIYKNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++     
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIQ 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G +    R            +     D  E          +          D++
Sbjct: 408 DVYKDFGFEDYRFRLS-----YRDPEDKHKYFDDDEM--------WEKAESMLKEASDEL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    DV   ++  ++ + + +S   ++    F    ++      T+
Sbjct: 455 GLTYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERFD----LTY 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG+ H   +   G+ +         +           +    +I  +N+  H     
Sbjct: 504 IGQDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPMQVEIIPVNVDLH----Y 559

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D    +   L   G  V  DD  E++G +   A +   P Q++VG K V + +V ++   
Sbjct: 560 DYARLLQDELKSQGVRVEIDDRNEKMGYKIREAQMKKIPYQIVVGDKEVENQEVNVRKYG 619

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           +  +E +  +E I          +
Sbjct: 620 SEKQESVEKDEFIWNVIDEIRLKK 643


>gi|54293678|ref|YP_126093.1| prolyl-tRNA synthetase [Legionella pneumophila str. Lens]
 gi|81822437|sp|Q5WYK5|SYP_LEGPL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|53753510|emb|CAH14965.1| Prolyl-tRNA synthetase (Proline--tRNA ligase)(ProRS)(Global RNA
           synthesis factor) [Legionella pneumophila str. Lens]
          Length = 569

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 136/393 (34%), Positives = 200/393 (50%), Gaps = 11/393 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P DAEIASH+LMLR+GMI +   G+Y+W+PLG + L  V  I+REE
Sbjct: 1   MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMPLGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+T A+E+ +P++Q A+LW E+GR++++G ++L + D N +   +GPTHEEV+TDI R+
Sbjct: 61  MNKTHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQREYCFGPTHEEVITDIMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+ E  + +Y  M+ +
Sbjct: 121 ELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLSLESLQETYKDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GLK   + A++G IGG  SHEF VLA++GE  +F S          + T   
Sbjct: 181 YCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLAESGEDLIFYSDASDYAANIEQATSLK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF------GTKY 294
              +  S  E  T          +E        + +     I  G           G   
Sbjct: 241 PPKANQSCNETITLVDTPNKKTIDEVASFLGIASNQTIKTLIVKGKEHPMVALVLRGDDE 300

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
              + AT                 +  ++     I        +I           +   
Sbjct: 301 LNEVKATKHPLVHSPLSFIDEELILKTLKTPLGSIGPVKLNIPVIVDHQALAMPSFVCGA 360

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
              D+   +A  +          D  +D    +
Sbjct: 361 NQADKHFINAAWE-----RDAKYDDAYDLRNVK 388



 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 68/197 (34%), Positives = 107/197 (54%), Gaps = 3/197 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A Y    D+ N K  D  P+ +      RGIEVGH+F  G KY+  M+A+     G+
Sbjct: 373 ERDAKYDDAYDLRNVKEGDPSPDGRGTLHCCRGIEVGHVFQLGDKYAKAMNASVINEQGQ 432

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              + MG YG+G  RVVAA IE  HD  GIIWP ++APF++++I +  A     ++  E 
Sbjct: 433 LQTMIMGCYGLGITRVVAAAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSHAVKEQAES 492

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y +L   G DV  DD  E+ G  FA  DL+G P +++V  + +    +E K R +   +
Sbjct: 493 LYQQLKSHGIDVLLDDRNERAGVLFADNDLIGIPHRLVVSERNLEQGCIEYKSRTSSETQ 552

Query: 428 DMSLEEVINYASHRFSN 444
            ++L++V+N+     + 
Sbjct: 553 LINLDKVVNFIIELINK 569


>gi|256826891|ref|YP_003150850.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Cryptobacterium
           curtum DSM 15641]
 gi|256583034|gb|ACU94168.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Cryptobacterium
           curtum DSM 15641]
          Length = 586

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 146/438 (33%), Gaps = 43/438 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      ++ L   M+     G   WLP G +  + +     E Q   G  ++  
Sbjct: 189 EAEKRDHRKIGREMELF--MMADEGPGFPFWLPNGMRLKNALTQYWMEMQEAYGYEQVDT 246

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + S  LW  SG +D Y + M      +D+     P +      I++S  +SYR+LP  
Sbjct: 247 PIILSRKLWETSGHWDHYKENMYT-TVIDDEDYAVKPMNCPGACLIYKSKPRSYRDLPLK 305

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             +     R EL+    G+ R R F   DA+   + P+                + + G 
Sbjct: 306 LAEAGKDHRHELKGALHGLFRVRAFTQDDAH-LFIRPDQITEQVTDTAHLITAYYEQFGF 364

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +   + P     S E   LA+ G                      + +    ++ E
Sbjct: 365 PY-RVELSTRPDDSMGSDEDWALAEEG-----------------LRQALEAMGVDYTLNE 406

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D H   L D L    +     ++    F             +  +DG   
Sbjct: 407 GDGAFYGPKIDFH---LQDCLGRTWQCGTIQLD----FQLPQ----NFELEYTDSDGSKK 455

Query: 311 YVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +   G G+      ++   + GK   W   +    + +       +  R+   +I 
Sbjct: 456 RPILIHRAGFGSFERFIGMLTEQYAGKFPTWLSPLQVKVLPV------SEKHREYSRQIA 509

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVA-DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L + G  V  D+  E+IG +   A  +   P  +I+G        + ++ R +     
Sbjct: 510 DKLRQAGVRVKVDERDEKIGYKIREARSVDRVPYMLILGEVEEEAGNISVRDR-SNETVQ 568

Query: 429 MSLEEVINYASHRFSNNR 446
            SL++ I       S  R
Sbjct: 569 RSLDDFITDIQAEISERR 586


>gi|169632514|ref|YP_001706250.1| prolyl-tRNA synthetase [Acinetobacter baumannii SDF]
 gi|226695258|sp|B0VRW9|SYP_ACIBS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169151306|emb|CAP00010.1| prolyl-tRNA synthetase [Acinetobacter baumannii]
          Length = 571

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 127/253 (50%), Positives = 172/253 (67%), Gaps = 1/253 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L  V+AI+REE
Sbjct: 1   MRTSRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGRY+ YG  +LR  DR+D   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGAMEVFMPVTQPASLWEESGRYEQYGPGLLRFKDRHDNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +YN M+ +
Sbjct: 121 ELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYNVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +       D+    E  +  
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAF-STESDYAANVEMAEAV 239

Query: 241 DIISLNSIVEQWT 253
            +    +  +++ 
Sbjct: 240 LVGERAAPTQEFK 252



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/192 (37%), Positives = 103/192 (53%), Gaps = 3/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A      D+ N    D  P+ K       GIEVGHIF  GTKYS  +     G DGK
Sbjct: 379 ERDAQITEVFDLRNVVEGDPSPDGKGTLQIKCGIEVGHIFQLGTKYSEALGCKVLGEDGK 438

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              V MG YGIG  RVVAA IE ++D KGIIWP ++APF+I+++ + A       +A E 
Sbjct: 439 PFTVTMGCYGIGVTRVVAAAIEQNYDDKGIIWPQAIAPFEIAIVPMNAHKSPRTLEAAEA 498

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R      
Sbjct: 499 LYAELQAQGFDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDAEAS 558

Query: 428 DMSLEEVINYAS 439
           +++ EE++   +
Sbjct: 559 NLTKEELLAKLA 570


>gi|304413226|ref|ZP_07394699.1| Prolyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
 gi|304284069|gb|EFL92462.1| Prolyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
          Length = 597

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 130/282 (46%), Positives = 175/282 (62%), Gaps = 4/282 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE  SHKLMLR GMI Q + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLATQKEIPADAESISHKLMLRAGMIQQVTSGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR+D YG E+LR  DR+++  + GPTHEEV+T + R+
Sbjct: 61  MNNAGAIEVSMPMVQPADLWQESGRWDKYGLELLRFVDRHERHFVLGPTHEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   +QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M  +
Sbjct: 121 QIKSYKQLPLNLFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQKTYDTMHAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL    ++A++G IGG  SHEF VLAD+GE  +       +F    E     
Sbjct: 181 YSKIFSRIGLDFRAVQADTGSIGGSRSHEFQVLADSGEDDIVF-STTSNFAANIE---LA 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             ++      + T         H + + D + + K    + +
Sbjct: 237 KAVAPTQSRAEATEALRIIDTPHVKTIADLVTQFKMPIEKTV 278



 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/195 (33%), Positives = 115/195 (58%), Gaps = 3/195 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N  + D+ P+ +   +  RGIEVGHIF  GT+YS  M+AT +  +GK   +
Sbjct: 385 PLPQVADIRNVVVGDASPDGQGTLLLKRGIEVGHIFQLGTQYSKIMNATIENKEGKKQAI 444

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYAR 371
            MG YGIG  R+VAA IE ++D  GI+WP+++APF+++++ +  H     ++  E +Y  
Sbjct: 445 TMGCYGIGVSRIVAAAIEQNYDEDGILWPEAIAPFQVAILPMNMHKSFRVQEQAEALYKA 504

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LS  G +V  DD  E+ G  F   +L+G P  +++  +   + +VE K+R +G  + +  
Sbjct: 505 LSDHGVEVILDDRCERPGVMFTDMELIGVPNSIVISERNHDNQEVEYKNRRSGETQMIKS 564

Query: 432 EEVINYASHRFSNNR 446
           +++I++   + + +R
Sbjct: 565 DKIIDFLIAQITKHR 579


>gi|62078861|ref|NP_001014086.1| probable prolyl-tRNA synthetase, mitochondrial precursor [Rattus
           norvegicus]
 gi|73919763|sp|Q5M7W7|SYPM_RAT RecName: Full=Probable prolyl-tRNA synthetase, mitochondrial;
           AltName: Full=Proline--tRNA ligase; Short=ProRS; Flags:
           Precursor
 gi|56789529|gb|AAH88403.1| Prolyl-tRNA synthetase 2, mitochondrial (putative) [Rattus
           norvegicus]
 gi|149035787|gb|EDL90468.1| rCG50302 [Rattus norvegicus]
          Length = 475

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 147/454 (32%), Positives = 227/454 (50%), Gaps = 44/454 (9%)

Query: 4   SKYFLPI-LQENP--------RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           S+ F P  L+E+          D    S +LML+ G+I   S G Y  +P   +A++ + 
Sbjct: 43  SRMFQPQNLREDQVLSLEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKLV 102

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +I +E    G  ++++P+L  A+LW  +GR+D  G+E+LRL DR+ K    GPTHEE +
Sbjct: 103 RVIDQEMQAIGGQKINMPSLSPAELWRATGRWDLMGRELLRLKDRHGKEYCLGPTHEEAV 162

Query: 115 T-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T  +      SY+ LP   YQ+  KFRDE RPRFG++R REF MKD Y+FD + E ++ +
Sbjct: 163 TALVASQKKLSYKQLPLLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQET 222

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R+F RLGL+ +  RA+ G IGG +SHEF +  D GE ++            
Sbjct: 223 YSLVCDAYCRLFDRLGLRWMKARADVGSIGGTMSHEFQLPVDIGEDRLVVCPSC------ 276

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                  A T  V   +      +      +GIEVGH FY GTK
Sbjct: 277 --------------------HFSANTEIVDLSQKICPDCQGPLTETKGIEVGHTFYLGTK 316

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS   +A F  A G+    +MG YG+G  R++AA IE       I WP  +AP+++ +I 
Sbjct: 317 YSSIFNAHFTNAHGESLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPSLLAPYQVCIIP 376

Query: 354 IKA--HDQVCRDACEKIYAR----LSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIV 406
            K    +    +  E++Y      L ++  +V  DD     IG++   A+ LG+P  +I 
Sbjct: 377 PKKGSKEAAATEIVERLYDDVTEALPQLRGEVLLDDRTHLTIGNRLKDANKLGYPFVIIA 436

Query: 407 GSKFVSDSK-VEIKHRLTGIREDMSLEEVINYAS 439
             + + D    E+  + TG    ++ E V+   +
Sbjct: 437 SKRALEDPAHFEVWSQNTGEVVFLTKEGVMELLT 470


>gi|281357061|ref|ZP_06243551.1| threonyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
 gi|281316619|gb|EFB00643.1| threonyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
          Length = 591

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 147/443 (33%), Gaps = 40/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y     +   RD      +L L +        G+  W P G           +EE  + G
Sbjct: 184 YLKQQEEAAKRDHRKLGVELDLFS-FSDNVGPGLVLWHPKGAFIRHTFETFWKEEHYKNG 242

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  + LW  SG    Y   M      ++K     P +     ++++S ++SY
Sbjct: 243 YELLYTPHIGQSVLWETSGHLSFYKDGMYSPMQIDEKDYYVKPMNCPFHIEVYQSRLRSY 302

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + ++   +R E      G++R R F   D++    TPE  +    ++    L I
Sbjct: 303 RELPLRWAELGTVYRYEKSGALHGLLRVRGFTQDDSHIIC-TPEQIEDEIAEVLRFSLYI 361

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I     + P                  +     +  +  + S     D +  
Sbjct: 362 WKSFGFTEIKPYLSTRP-----------------AKAVGEPERWEKALVSLRKAIDKLGL 404

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D+   K+ D++    + +    +    F    ++ +    T+ G
Sbjct: 405 ECEVDEGGGAFYGPKIDL---KVKDAIGREWQTATIQFD----FNLPERFDM----TYIG 453

Query: 305 ADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            DGK H   M    +     R    +IE       +      A                 
Sbjct: 454 EDGKKHRPYMVHRALMGSLERFFGILIEQYAGAFPLWLAPEQARILPV-------SDRQH 506

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           DA   +   L   G  V  D     +G++   A     P  ++VG +  +D  + +++R 
Sbjct: 507 DAAMALKKELRLKGFRVEVDVKAASLGAKIKDARKERIPYMLVVGEREAADGTMAVRNRR 566

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G    M+L++++        N 
Sbjct: 567 EGELGTMTLDQLVEKMRFEVDNK 589


>gi|254456038|ref|ZP_05069467.1| threonyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083040|gb|EDZ60466.1| threonyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 638

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 150/439 (34%), Gaps = 39/439 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      ++ L      + S G   W   G      +   +R  Q+  
Sbjct: 231 EYLKRIEEAEKRDHRKLGKEMDLF--HFREESPGSVFWHEKGWALFQKLINYMRSRQDAA 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E++ P +    LW +SG ++ YG+ M      ++K     P +      +F   +KS
Sbjct: 289 GYREVNTPEILDRQLWEKSGHWEKYGENMYTSETPDEKVFAIKPMNCPGHIQVFNQGLKS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R E      G++R R F   DA+ F    + +           L 
Sbjct: 349 YRDLPIRIAEFGKVHRYEPSGALHGLLRVRAFTQDDAHIFCSEDQITSECLEVT-NLILD 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I+  LG +++ ++    P       E                   D    S         
Sbjct: 408 IYKDLGFENVILKYADRPEVRVGDDE-----------------IWDKAEASLLEAVKASK 450

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              SI +   A Y    +     L D++  + +     +++               A++ 
Sbjct: 451 LEYSINKGEGAFYGPKIEF---VLRDAIGRDWQCGTLQVDLNLPGRLD--------ASYV 499

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG     V +     G++     ++    +     +P  ++P +  +I I    +   
Sbjct: 500 DKDGTKKVPVMLHRALFGSLERFIGILI---ENYAGKFPFWISPLQTMVIPI---SEEFN 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++  ++ KVG     D     +  +     L   P+ +I G K V  + V I+   
Sbjct: 554 DYAVEVSKKIKKVGISSAVDLKNNNLNYKIRDHSLAKIPVLLICGKKEVDSNSVTIRRLD 613

Query: 423 TGIREDMSLEEVINYASHR 441
           +  +E+M  E+ +   S  
Sbjct: 614 SNKQENMDTEQFLKTFSAL 632


>gi|114777677|ref|ZP_01452637.1| prolyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
 gi|114551893|gb|EAU54427.1| prolyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
          Length = 572

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 115/237 (48%), Positives = 151/237 (63%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F+P L++ P DAE+ SH+L+LR G I + + G+Y +LPL  + L  + AIIREE
Sbjct: 1   MRYSNCFVPTLRDVPADAEVISHQLLLRAGYIRRVTSGVYDYLPLALRVLRRIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA E+ +P +Q  +LW +SGR   YG E+LR  DR+      GPTHEEV+ D+   
Sbjct: 61  MERAGAQELLMPMVQPTELWEKSGRLAKYGPELLRFEDRHAHQSCLGPTHEEVICDLMSR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E     Y  MF +
Sbjct: 121 ELRSYKQLPLNLYQIQNKFRDEIRPRFGLMRGREFVMKDAYSFHADDESLMAEYRNMFDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF RLGL+  P+ A++G IGG  SHEF VLAD+GE  V    +  ++    E  
Sbjct: 181 YTRIFDRLGLRFRPVEADTGSIGGSDSHEFHVLADSGE-DVIAHCESCEYAANVEKA 236



 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/191 (34%), Positives = 104/191 (54%), Gaps = 4/191 (2%)

Query: 257 AATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A   D+   +  D  P        +RGIEVG +F  G +Y+ PM   F+   GK     M
Sbjct: 379 AQLVDLRETRAGDGCPRCGGTIALSRGIEVGQVFALGRRYTEPMEVVFQNQQGKREVATM 438

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R++AAV+E  HD  GI WPD +APF + L+++   D    +A  +IY +L  
Sbjct: 439 GCYGIGVSRLMAAVVEQCHDDGGIAWPDVLAPFPVILVSMGKSD-AVLEASGEIYKQLQT 497

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV WD+  E+ G +F  A+L+G PLQ+++G + + +   E   R +  R ++++ +V
Sbjct: 498 AGIDVLWDERNERPGVKFKDAELIGIPLQIVIGDRGLKEGVAEFGRRGS-DRREVAIADV 556

Query: 435 INYASHRFSNN 445
           +  A+   +N 
Sbjct: 557 VAMATTELANR 567


>gi|301065031|ref|ZP_07205376.1| proline--tRNA ligase [delta proteobacterium NaphS2]
 gi|300440880|gb|EFK05300.1| proline--tRNA ligase [delta proteobacterium NaphS2]
          Length = 575

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 130/267 (48%), Positives = 174/267 (65%), Gaps = 6/267 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S YF+P  +E P DAEI SH+LM+R GMI + + GIY++LP+G K++  V  I+REE
Sbjct: 1   MRYSSYFIPTKKEIPADAEIISHQLMIRAGMIRKLTSGIYTYLPVGLKSIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG+E+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIEVLMPAVQPAELWQESGRWEYYGRELLRFKDRHDRDACMGPTHEEVITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ +P   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  SY  M+ +
Sbjct: 121 EIHSYKQMPINLYQIQTKFRDEIRPRFGIMRGREFIMKDAYSFDVDEAGANRSYEAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP------IPS 234
           Y RIF R GLK   + A+SG IGG  SHEF+VLAD+GE Q+                + +
Sbjct: 181 YERIFQRCGLKFRAVEADSGTIGGSYSHEFMVLADSGEDQIVNCATCSYAANLERAEVKA 240

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSD 261
           E       ++    +E+   P   T D
Sbjct: 241 EENMTPPDLNELMGLERVETPGQRTID 267



 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 102/192 (53%), Gaps = 6/192 (3%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+      D  P      +  RGIEVGH+F  G KYS  M A F    GK+  + MG YG
Sbjct: 384 DLRTIAEGDPCPRCGGAMSFGRGIEVGHVFKLGVKYSEAMKALFLNEQGKELPMIMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R VAA IE +HD  GI++P  VAPF++S++ ++ H+    +A +KIY  L K G D
Sbjct: 444 IGIGRTVAAAIEQNHDENGIVFPIPVAPFEVSILPLQMHNDHVVNAADKIYEELMKSGID 503

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI--- 435
              DD  E+ G +F  ADLLG P+++ VGS+ + + +VE+K R       + L+      
Sbjct: 504 ALLDDRDERAGVKFNDADLLGIPVRITVGSRGLKNGEVEVKLRSEAESFTVPLDNAAIAI 563

Query: 436 -NYASHRFSNNR 446
                  + + +
Sbjct: 564 GKTVKDLYDSLK 575


>gi|307731045|ref|YP_003908269.1| prolyl-tRNA synthetase [Burkholderia sp. CCGE1003]
 gi|307585580|gb|ADN58978.1| prolyl-tRNA synthetase [Burkholderia sp. CCGE1003]
          Length = 578

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 137/288 (47%), Positives = 181/288 (62%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQSDFVIGPTHEEVVTDIARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLRESYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-- 238
           Y+RIF RLGL    + A++G IGG  SHEF V+ADTGE  +       DF    E  +  
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIADTGEDAIAYCPT-SDFAANVEAAEAL 239

Query: 239 --FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
             + +  +    +++   P  A  +   E L   L    +      E 
Sbjct: 240 PLYAERAAPTEQLKKTPTPGKAKCEAVAELLNIPLERTIKSIVLATEN 287



 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 107/192 (55%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M+AT    +GK   +
Sbjct: 382 PEPVVADIRNVKKGDPSPDGKGVLDICRGIEVGHVFQLGTKYSEAMNATCLDENGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R++ A IE + D KGIIWP+S+APF++ L  +     +  R+  +K+Y +
Sbjct: 442 EMGCYGIGITRILGAAIEQNFDEKGIIWPESIAPFEVVLCPMGYDRSEAVREQADKLYTQ 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       + +
Sbjct: 502 LVDAGIDVILDDRGERPGVMFADWELIGVPHRLVIGDRGLKDGKLEYQGRRDAEATLLPV 561

Query: 432 EEVINYASHRFS 443
           +E       +  
Sbjct: 562 DEAAQAVIAKVR 573


>gi|189501972|ref|YP_001957689.1| threonyl-tRNA synthetase [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497413|gb|ACE05960.1| hypothetical protein Aasi_0559 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 644

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 155/444 (34%), Gaps = 37/444 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   R+ +    +L L T    +   G+  WLP G    + +   +R  Q +
Sbjct: 233 KAYLELLEEAQKRNHQKIGKELKLFT-FSEKVGIGLPLWLPRGTVLREQLEQFLRRAQVK 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   +  P +   +L++ SG YD YG++  +        +     P +     +I++  
Sbjct: 292 AGYQPVVTPHIGHKELYMTSGHYDKYGEDSFQPIRTPHEGEEFFLKPMNCPHHCEIYKHE 351

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR+LP    +    +R E      G++R+R F   DA+ F    +  +  + K+   
Sbjct: 352 PRSYRDLPVRLAEFGTVYRYEQHGELHGLVRTRGFTQDDAHIFCRNDQVREE-FAKVIDL 410

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +F  LG      R                       +    ++  D    +      
Sbjct: 411 VTYVFSALGFSDYTARLS-------------FRDPEQLHKYIGDQEDWDKAEEAIEEVAK 457

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +      A Y    D     + D+L  N ++    ++      F          
Sbjct: 458 LRKLNTTKALGEAAFYGPKLDFM---VKDALGRNWQLGTVQLDYQLPVRFD--------L 506

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++ GAD K H    +     G++    A++     GK  +W           + I    +
Sbjct: 507 SYTGADNKKHRPVMIHRAPFGSLERFIAILLEHTAGKLPLW------LAPEQVAILPISE 560

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E++   L       F D   E+IG +   A+L   P   I+G K   +  V ++
Sbjct: 561 KFAAYAEEVNQNLRNKDIRCFIDHRDEKIGKKIREAELSKIPYMFIIGEKEQLERTVSVR 620

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            +  G +    +++++       S
Sbjct: 621 KQGAGDQGSFPIDKLVQEIVEDIS 644


>gi|148360654|ref|YP_001251861.1| prolyl-tRNA synthase [Legionella pneumophila str. Corby]
 gi|296106282|ref|YP_003617982.1| prolyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
 gi|166980133|sp|A5IGL5|SYP_LEGPC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148282427|gb|ABQ56515.1| prolyl-tRNA synthase [Legionella pneumophila str. Corby]
 gi|295648183|gb|ADG24030.1| prolyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
          Length = 569

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 135/393 (34%), Positives = 200/393 (50%), Gaps = 11/393 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P DAEIASH+LMLR+GMI +   G+Y+W+PLG + L  V  I+REE
Sbjct: 1   MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMPLGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+T A+E+ +P++Q A+LW E+GR++++G ++L + D N +   +GPTHEEV+TDI R+
Sbjct: 61  MNKTHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQREYCFGPTHEEVITDIMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+ E  + +Y  M+ +
Sbjct: 121 ELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLSIESLQETYKDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GLK   + A++G IGG  SHEF VLA++GE  +F S          + T   
Sbjct: 181 YCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLAESGEDLIFYSDASDYAANIEQATSLK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF------GTKY 294
              +  +  E  T          +E        + +     I  G           G   
Sbjct: 241 PPKANQACNETITLVDTPNQKTIDEVASFLGIASNQTIKTLIVKGKEHPMVALVLRGDDE 300

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
              + AT                 +  ++     I        +I           +   
Sbjct: 301 LNEVKATKHPLVHSPLSFIDEELILKTLKTPLGSIGPIQLNIPVIVDHHALAMPSFVCGA 360

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
              D+   +A  +          D  +D    +
Sbjct: 361 NQADKHFINAAWE-----RDAKYDDAYDLRNVK 388



 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 106/197 (53%), Gaps = 3/197 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A Y    D+ N K  D  P         RGIEVGH+F  G KY+  M+A+     G+
Sbjct: 373 ERDAKYDDAYDLRNVKEGDPSPDGRGMLHCCRGIEVGHVFQLGDKYAKAMNASVINEQGQ 432

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              + MG YG+G  RVVAA IE  HD  GIIWP ++APF++++I +  A  Q  ++  E 
Sbjct: 433 LQTMIMGCYGLGITRVVAAAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSQTVKEQAES 492

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y +L   G DV  DD  E+ G  FA  DL+G P +++V  + +    +E K R +   +
Sbjct: 493 LYQQLKSHGIDVLLDDRNERAGVLFADNDLIGIPHRLVVSERNLEQGCIEYKSRTSSETQ 552

Query: 428 DMSLEEVINYASHRFSN 444
            ++L++V+N+     + 
Sbjct: 553 LINLDKVVNFIIELINK 569


>gi|296331396|ref|ZP_06873868.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305676383|ref|YP_003868055.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151511|gb|EFG92388.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305414627|gb|ADM39746.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 638

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 145/442 (32%), Gaps = 44/442 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +L L   M  + + G+  +LP GQ   + +    RE Q + G 
Sbjct: 235 LHTLEEAAKRDHRKLGKQLELF--MFSEEAPGMPFYLPKGQIIRNELERFSRELQTKAGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y   M   ++ +D      P +      IF++ + SYR
Sbjct: 293 EEVRTPFMMNQRLWEQSGHWDHYRDNM-YFSEVDDTRFAMKPMNCPGHMLIFKNSLYSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R E      G++R R F   DA+ F    +        + +      
Sbjct: 352 DLPIRMAEFGQVHRHEYSGALNGMLRVRTFCQDDAHIFVREDQIESEIKEAIRLI----- 406

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                           +      E+ V   T            +    +     +++   
Sbjct: 407 --------------DEVYRTFGFEYSVELSTRPEDSLGDDSLWEASERALAYVLEELNLS 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             + +   A Y    D H   + D+L  + + +   ++    F    K+      T+   
Sbjct: 453 YEVNKGDGAFYGPKIDFH---IKDALKRSHQCATIQLD----FQMPEKFD----LTYINE 501

Query: 306 DGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +     +    +     R    +IE       +                     V  D
Sbjct: 502 HNEKVRPVVIHRAVFGSIDRFFGILIEHFGGAFPVWLAPIQVQIIPV-------SHVHWD 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C K+ A L ++G     D+  E++G +   + +   P  +++G        V ++    
Sbjct: 555 YCRKVQAELKRLGIRARIDERNEKLGYKIRESQVQKIPYVLVLGDHEEQKDAVNVRQFGD 614

Query: 424 GIREDMSLEEVINYASHRFSNN 445
            + E +  +   +    +  N 
Sbjct: 615 QLIEHVPFQTFKDKLVKQVKNR 636


>gi|260463880|ref|ZP_05812076.1| threonyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
 gi|259030255|gb|EEW31535.1| threonyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
          Length = 658

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 149/443 (33%), Gaps = 39/443 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +L+E   RD      ++ L      +   G+  W   G K   N+   +R   +  G
Sbjct: 235 YQTMLEEAEKRDHRKLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVNYMRRRLDEQG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG +  Y   M ++        +D+     P +      IF+ 
Sbjct: 293 YQEVNAPQVLDKSLWETSGHWGWYRDAMFKVTVAGDDTDDDRVFALKPMNCPGHVQIFKH 352

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R E      G+MR R F   DA+ F    + +         
Sbjct: 353 GLKSYRDLPVKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQLAAECLRIN-D 411

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L  +   G + + ++  + P     + E    A+            M   + +  T  
Sbjct: 412 LILSTYADFGFEEVSVKLSTRPDKRVGTDEAWDHAEA----------IMGNVLETIRTRS 461

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            + I   SI     A Y    +     L D++    +     ++      FG        
Sbjct: 462 GNRIK-TSINPGEGAFYGPKFEY---VLKDAIGREWQCGTTQVDFNLPERFG-------- 509

Query: 300 ATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A + G    K   V +     G+M     ++  ++ G   +W   +     ++       
Sbjct: 510 AFYIGSDSEKKQPVMVHRAICGSMERFLGILIENYSGHFPLWFAPLQVVVATIT------ 563

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++ A+L   G     D   E+I  +     L   P+ ++ G +   +  V I
Sbjct: 564 SEADGYATEVVAKLKAAGLLAEADLRNEKINYKVREHSLAKVPVILVCGKREAEEQTVNI 623

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  ++ + L E I   +  
Sbjct: 624 RRLGSRDQQSLGLAEAIAQLTEE 646


>gi|254496505|ref|ZP_05109377.1| prolyl-tRNA synthase [Legionella drancourtii LLAP12]
 gi|254354272|gb|EET12935.1| prolyl-tRNA synthase [Legionella drancourtii LLAP12]
          Length = 577

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 169/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL  L+E P DAEI SH+LMLRTGMI +   G+Y+W+PLG K L  V  I+REE
Sbjct: 9   MRASQWFLATLKETPNDAEIVSHQLMLRTGMIRKLGSGLYTWMPLGLKVLRKVEHIVREE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR  ++E+ +P +Q A+LW E+GR++++G ++L + D N +   YGPTHEEV+TDI R+
Sbjct: 69  MNRINSVELLMPAVQPAELWQETGRWETFGGQLLTMKDSNGREYCYGPTHEEVITDIMRN 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L  E  +++Y  M+ +
Sbjct: 129 ELQSYKQLPRCFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLNLESLQNTYKDMYQA 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R+GLK   + A++G IGG  SHEF VLAD+GE  +F S    D+    E
Sbjct: 189 YCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLADSGEDLIFYSD-ASDYAANIE 242



 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/186 (37%), Positives = 100/186 (53%), Gaps = 3/186 (1%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N K  D  P+ K    S RGIEVGH+F  G KY+  M+A      G+   + MG YG
Sbjct: 391 DLRNVKEGDISPDGKGTLHSCRGIEVGHVFQLGDKYAKAMNAAVINEQGQLETMMMGCYG 450

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGC 377
           +G  RVVAA IE  HD +GIIWP ++APF++ +I +     Q  +D  + +Y +    G 
Sbjct: 451 LGITRVVAAAIEQHHDEQGIIWPSNIAPFQVVIIPLNGHKSQAVKDQADVLYKQFRNAGI 510

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD  E+ G+ FA  DL+G P +++V  + +  + VE K R TG  + + L   +  
Sbjct: 511 DVLLDDRNERAGALFADHDLIGVPHRLVVSDRNLEQNCVEYKSRATGETKSLDLNTAVAE 570

Query: 438 ASHRFS 443
                S
Sbjct: 571 IVSLVS 576


>gi|269467800|gb|EEZ79555.1| prolyl-tRNA synthetase [uncultured SUP05 cluster bacterium]
          Length = 560

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 121/241 (50%), Positives = 164/241 (68%), Gaps = 1/241 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +   +P  +E P DA+I SH+LM+R G+I + + G+YS+LP+G + L  V AIIREE
Sbjct: 1   MKTTNLLIPTQKEAPNDAQIISHQLMIRAGLISKLASGLYSYLPMGLRVLKKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA E+ +P  Q A+LW ESGR++ YG E+LR  DR+++    GPTHEEV+T +   
Sbjct: 61  MNKSGAQEVLMPVAQPAELWQESGRWEQYGPELLRFNDRHNRKFCLGPTHEEVITHLAAQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF L     + +++ M  +
Sbjct: 121 YIRSYKQLPMNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHLDQNSLQQTFDVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF+RLGL   P+ A+SG IGGD S EF VLAD+GE  + C  D  D+    E   F 
Sbjct: 181 YCNIFNRLGLDYRPVLADSGSIGGDNSVEFHVLADSGEDAI-CFSDRSDYAANIEKVAFS 239

Query: 241 D 241
            
Sbjct: 240 K 240



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/194 (35%), Positives = 104/194 (53%), Gaps = 3/194 (1%)

Query: 252 WTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           W       +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M A   G  GK 
Sbjct: 366 WQGIEFNEADLRNAVEGDVSPDGKGRLLIKRGIEVGHIFQLGTKYSQAMKANVIGESGKA 425

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKI 368
               MG YGIG  RV+AA IE +HD +GII+P+S+APF++ ++ I        +D  +++
Sbjct: 426 VTTTMGCYGIGVTRVIAASIEQNHDDRGIIFPESIAPFQVVIVPINYNKSTRVKDLADQL 485

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y +    G +V  DD  E+ G  FA ++LLG P ++++      +  VE K R    + +
Sbjct: 486 YRQCLDAGIEVLLDDRKERAGIMFADSELLGIPHRMVLSDTHADNGNVEYKARNNPDKVE 545

Query: 429 MSLEEVINYASHRF 442
           +  +EV+++   + 
Sbjct: 546 VKFDEVLSFIQSKL 559


>gi|91762425|ref|ZP_01264390.1| Threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718227|gb|EAS84877.1| Threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 638

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 78/439 (17%), Positives = 146/439 (33%), Gaps = 39/439 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      ++ L      + S G   W   G K    + A +R  Q + 
Sbjct: 231 EYLKRIEEAEKRDHRKLGKEMDLF--HFREESPGSVFWHEKGWKLFQKLVAYMRARQEKA 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E++ P +    LW +SG ++ YG+ M      ++K     P +      +F   +KS
Sbjct: 289 GYKEVNTPEILDRSLWEKSGHWEKYGEHMYTSQTPDEKIFAIKPMNCPGHVQVFNQGLKS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R E      G++R R F   DA+ F    + +           L 
Sbjct: 349 YRDLPLRISEFGKVHRYEPSGALHGLLRVRAFTQDDAHIFCTEDQITSECLIVT-NLILD 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I+  LG + + ++    P                        +  D    +         
Sbjct: 408 IYKDLGFEDVILKYSDRPDLR-----------------VGDDNVWDKAEKALLDAVKASK 450

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +I +   A Y    +     L D++  + +     +++               A+F 
Sbjct: 451 LQYTINKGEGAFYGPKIEF---VLRDAIGRDWQCGTLQVDLNLPGRLD--------ASFV 499

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +     G++     ++  ++ GK   W             +    +   
Sbjct: 500 DKDGTKKIPVMLHRALFGSLERFIGILIENYAGKFPFW------IAPLQAVVIPISEEFD 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  +++  G     D     +  +     L   PL +I G K V  + V I+   
Sbjct: 554 TYAKEVNEKINNAGISSEVDLKNHNLNYKIREHSLSKIPLLLICGKKEVDSNSVTIRRLD 613

Query: 423 TGIREDMSLEEVINYASHR 441
           T  +E+M L   +   S  
Sbjct: 614 TNKQENMELNLFLETFSAL 632


>gi|85709956|ref|ZP_01041021.1| threonyl-tRNA synthetase [Erythrobacter sp. NAP1]
 gi|85688666|gb|EAQ28670.1| threonyl-tRNA synthetase [Erythrobacter sp. NAP1]
          Length = 671

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 84/460 (18%), Positives = 150/460 (32%), Gaps = 54/460 (11%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++    L  L+E   RD      ++ L    + + + G   W P G +    + A +R +
Sbjct: 236 KQLNAHLHRLEEAAKRDHRKLGREMDLF--HLQEEAHGSVFWHPKGYRIWRELEAYMRRK 293

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR------------------NDK 102
            +  G  E+  P L     W +SG +  Y + M  + D                   +  
Sbjct: 294 MDGGGYREIKTPQLMDVRQWTQSGHWGKYAENMFAVPDIVPDVDDSGEAEASPKVADDAD 353

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAY 161
            M   P +      +F+  I SYR+LP    ++    R+E      G+MR R+F   DA+
Sbjct: 354 WMAIKPMNCPAHVLVFKQGITSYRDLPIRLGEMGCCHRNEPHGALHGLMRVRQFTQDDAH 413

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            F    +  +    + F +     +R    S  ++    P     S E    A+      
Sbjct: 414 IFCTEDQVVEE--VRKFCALADSVYRDFGFSYHVKLALRPEKRFGSEEDWDKAEQELRDA 471

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                  +     E             +    A YA   + H   L D++    +V    
Sbjct: 472 VAEAGMDNEEYGWEE------------LPGEGAFYAPKLEWH---LTDAIGRTWQVGTIQ 516

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            +                AT+ G DG+ H    +     G+      ++     G+   W
Sbjct: 517 GDRVLPDRLD--------ATYVGEDGEKHRPVMLHRAIFGSYERFIGILIEHFAGRLPSW 568

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              V     +++          D   +  A+L   G  V  D   E+I  +     L   
Sbjct: 569 LAPVQAVVATIV------SDADDYANEATAKLQAAGIRVESDLRNEKINYKVREHSLAKV 622

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           P  ++VG +   +  V ++      +  MSL+E I     
Sbjct: 623 PHLLVVGKREAEEGTVAVRTLGEKEQRVMSLDEAIAMLRD 662


>gi|323142328|ref|ZP_08077160.1| proline--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322413212|gb|EFY04099.1| proline--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 569

 Score =  242 bits (618), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 123/361 (34%), Positives = 186/361 (51%), Gaps = 10/361 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P L+E P +AEI SH+L+LR G + + + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MKVSKMYAPTLREVPSEAEIPSHQLLLRAGFMRKSTNGMYTYLPLAWRVIKKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A++W ESGR+D+YG EM+RL DR+      GPTHEE++T + ++
Sbjct: 61  MDHAGCQEIMMPIMQPAEIWKESGRWDAYGAEMVRLKDRHGHEYCLGPTHEEMVTTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE RPRFG+MRSR+F+MKD YSFD    G   SY  M+ +
Sbjct: 121 DVRSYRQLPLNLYQIQDKFRDERRPRFGLMRSRDFIMKDGYSFDRDEAGLDVSYKAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R GL   P+ A+SG IGG  SHEF+VLAD+GE ++       D+    E  +  
Sbjct: 181 YDKIFTRCGLNFRPVEADSGAIGGTGSHEFMVLADSGEAEITYCTKC-DYAADIEKAELY 239

Query: 241 DIISLNSIVEQWT---APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            I +    +++ +    P   T       L   + ++ +  A   E G +  F       
Sbjct: 240 PIKAPAEEMQELSEVETPNCKTIADVCAFLNAPIEKSVKAVAYQCEKGLVLCFVRGDHEV 299

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                +   G        +  +     V   +        +               +  H
Sbjct: 300 NETKVQNTVGAVELEMAEAELLAKAGTVGGYMG------PVGLDPEKVIIVCDATVMNMH 353

Query: 358 D 358
           +
Sbjct: 354 N 354



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 114/233 (48%), Gaps = 4/233 (1%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D  +  + C    M+        + +    +N+   +   P    +D+      D  P  
Sbjct: 337 DPEKVIIVCDATVMNMHNVCCGANHEGFHYINANPGRDFTP-TYVADIRLMAEGDPCPHC 395

Query: 275 KRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               A  RGIE G +F   TKYS  M  T+   +GK+  + MG YGIG  R +AA +E S
Sbjct: 396 GAPIAKARGIEAGQVFKLHTKYSAAMKCTYLDENGKEQPMVMGCYGIGVGRTMAACVEQS 455

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           HD  G+IWP ++AP+++ ++ +   D+      EKIY  L K G +V  DD  E+ G +F
Sbjct: 456 HDADGMIWPVAIAPYEVLVVPVNVKDEASFAKAEKIYNELHKAGVEVVIDDRKERPGVKF 515

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE-EVINYASHRFSN 444
             ADL+G+PL+V+VG K +   ++E+K R TG    + L+ + I         
Sbjct: 516 KDADLIGYPLRVVVGPKTLQTGELEVKVRKTGEVSMLPLDGDYITAIKEMLQK 568


>gi|172054921|ref|YP_001806248.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171701202|gb|ACB54182.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 644

 Score =  242 bits (618), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 158/442 (35%), Gaps = 39/442 (8%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L   +E  R D      +L L +  I +    G+  W P G      +    R+     
Sbjct: 236 YLQQQEEAKRRDHRKLGKELKLFS--IQENAGGGLVFWHPRGATMRYLIEDYWRKAHLDG 293

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + + +LW  SG +D Y + M    D  ++A    P +       +++ + S
Sbjct: 294 GYELLYTPHVANLELWKTSGHFDFYRENMFDSMDIEEQAYQIKPMNCPFHVLTYKNDLHS 353

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR  P  + ++   +R E      G+MR R F   DA+ F L  + +      +     +
Sbjct: 354 YREFPLRWAELGTVYRYERSGVLHGLMRVRGFTQDDAHIFCLPTQIASE-ILGVLNLTEK 412

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G K   +   + P     + E                   +    +     +   
Sbjct: 413 ILSDFGFKDYEVNLSTRPEKSVGTDE-----------------GWELATQALVEALNSKS 455

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 +   A Y    D+   K+ D++    + S   ++    F    ++ +   A   
Sbjct: 456 WEYIEDKGGGAFYGPKIDI---KIKDAIGRTWQCSTIQVD----FNLPERFDMEYVAA-- 506

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               +   + +     G++     ++    +     +P  +AP ++ L+ +    +  R+
Sbjct: 507 -DGSRQRPIMIHRAIFGSLERFYGILI---ENYAGDFPLWLAPIQLRLLPV---SEAQRE 559

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E + A L + G  V  D  GE++G Q   A+L   P+  IVG+K V    + I+ R  
Sbjct: 560 YGEAVVATLKEAGYRVEIDCTGERLGKQIRNAELEKIPVVAIVGNKEVETQSLSIRTRQQ 619

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M L E+        +N 
Sbjct: 620 GDIGTMDLTELKKSLDDAIANK 641


>gi|114563918|ref|YP_751432.1| prolyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
 gi|122299171|sp|Q07ZH1|SYP_SHEFN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114335211|gb|ABI72593.1| prolyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
          Length = 571

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 124/237 (52%), Positives = 166/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+Y+WLP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVISHQLMLRAGMIRRNASGLYTWLPSGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+TGAIE+ +P +Q ADLWVE+GR+D +G E+LR  DRN++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKTGAIEILMPLVQPADLWVETGRWDKFGPELLRFQDRNNRDFVLGPTHEEVITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T YQ+Q KFRDE+RPRFGVMR+REFLMKDAYSF L  E   ++Y+ M  +
Sbjct: 121 ELSSYKQLPLTLYQVQTKFRDEVRPRFGVMRAREFLMKDAYSFHLDQETMDNTYHAMHTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  I  R+GL   P+ A++G IGG +SHEF VLA++GE  +       D+    E  
Sbjct: 181 YSNILTRMGLSFRPVLADTGSIGGSMSHEFHVLANSGEDLIAY-STGSDYAANIEKA 236



 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 107/189 (56%), Gaps = 3/189 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    +  P+       ARGIEVGHIF  GT YS  M+AT    +GK   +
Sbjct: 379 PLATAADIRNVVEGEPTPDGLGTYAMARGIEVGHIFQLGTSYSKSMNATVLDENGKAQVL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE ++D +GI WP+++APF + ++ +         D  EK+Y  
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNNDDRGITWPEAIAPFTVGILPMNMHKSHRVADIAEKLYQD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +V  DD  E+ G  FA  +L+G P  V++G + +     E K+R TG ++D+  
Sbjct: 499 LADAGVEVLMDDRKERPGVMFADMELIGLPHVVVIGDRNIDAGVFEYKNRRTGEKQDIPF 558

Query: 432 EEVINYASH 440
           +E++ + ++
Sbjct: 559 DEIVAFLTN 567


>gi|212635267|ref|YP_002311792.1| threonyl-tRNA synthetase [Shewanella piezotolerans WP3]
 gi|226701407|sp|B8CME8|SYT_SHEPW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|212556751|gb|ACJ29205.1| Threonyl-tRNA synthetase, class IIa [Shewanella piezotolerans WP3]
          Length = 642

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 138/439 (31%), Gaps = 40/439 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + + + G+  W   G      +   IR++  +   
Sbjct: 233 LNRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWSLFLELEKFIRQKLGQYTY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M    +   +     P +      IF   +KSYR
Sbjct: 291 QEVKGPLMMDRVLWERSGHWDKYADGMFT-TNSESREYAIKPMNCPGHVQIFNQGLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F    +  +   +         +
Sbjct: 350 DLPLRMAEFGCCHRNEPSGSLHGLMRVRGFTQDDAHVFCTEEQVQQE-VSACIQMVYDTY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G K+I ++  + P                        D  D    +           
Sbjct: 409 ETFGFKNIVVKLSTRPEKR-----------------IGDDDMWDRAEEALKQALKSNDIE 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I+    A Y    +     L D L    +     ++       G        AT+   
Sbjct: 452 FEILPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDYALPGRLG--------ATYVAE 500

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D        +    +G++     ++   + GK   W        +++           D 
Sbjct: 501 DNSRQTPVMIHRAILGSLERFLGILIEEYAGKFPTWLAPQQVVVMNIT------DKQSDY 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E++     + G     D   E+IG +     L   P  ++VG + + + +V ++ R   
Sbjct: 555 AEEVVNLFKEHGIRATKDLRNEKIGFKIREHTLRRVPYLLVVGDQEMENKEVAVRTREGV 614

Query: 425 IREDMSLEEVINYASHRFS 443
               M ++E      ++ S
Sbjct: 615 DLGKMQIQEFATKLKNQIS 633


>gi|167752344|ref|ZP_02424471.1| hypothetical protein ALIPUT_00588 [Alistipes putredinis DSM 17216]
 gi|167660585|gb|EDS04715.1| hypothetical protein ALIPUT_00588 [Alistipes putredinis DSM 17216]
          Length = 651

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 95/451 (21%), Positives = 164/451 (36%), Gaps = 42/451 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L      +  +G+  WLP G    D +   +R  Q   
Sbjct: 229 EYLAMMEEAKKRDHRKLGKELELF-CFSQRVGQGLPLWLPKGAALRDRLEQFLRGVQKEY 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN--DKAMIYGPTHEEVMTDIFRSHI 122
           G  ++  P + + +L+V SG Y  YGK+  +        +  +  P +     +I+RS  
Sbjct: 288 GYQQVITPHIGNKELYVTSGHYAKYGKDSFQPIHTPIEGEEYLLKPMNCPHHCEIYRSKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP    +    +R E      G+ R R F   DA+ F    +  +  + K+    
Sbjct: 348 RSYKELPVRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHMFVRPDQLLEE-FEKVIDIV 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L IF  L   +   +                  D    + +   D       S       
Sbjct: 407 LYIFKTLKFDNYTAQISLR--------------DPNNKEKYIGSDENWEKAESAIIQAAK 452

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              LN+++E    A Y    D     + D++    ++    ++                 
Sbjct: 453 EKGLNTVIEYGEAAFYGPKLDFM---VRDAIGRKWQLGTIQVDYNLP--------ERFDL 501

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+KGAD K H    +     G+M    AV+     GK  +W           + +    +
Sbjct: 502 TYKGADDKMHRPIMIHRAPFGSMERFVAVLLEHTGGKFPLW------LSPDQVVVLPISE 555

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  EK+ A L+K       DD  E+IG +    +L   P  +IVG K  ++  V ++
Sbjct: 556 KFNDYAEKVSAYLNKYDIRSQVDDRNEKIGRKIRDNELKRIPYLLIVGEKEEAEGLVSVR 615

Query: 420 HRLTGIREDMSLEEVINY----ASHRFSNNR 446
            +  G +  M+LE   +Y     SH    N+
Sbjct: 616 AQGEGDKGQMTLEAFRDYMTDLVSHEIDANK 646


>gi|258405882|ref|YP_003198624.1| prolyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
 gi|257798109|gb|ACV69046.1| prolyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
          Length = 579

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 128/279 (45%), Positives = 172/279 (61%), Gaps = 2/279 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  ++P L+E P +AE+ SHKL++R GMI + + GIY++LPLG +ALD +  ++REE
Sbjct: 1   MRLSNAYIPTLKEEPAEAEVVSHKLLVRAGMIRKVTSGIYTFLPLGLRALDKIAHVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G  E+ +P +Q  DLW E+GR++ YGKE+LRL DR+D+    GPTHEEV+T + R 
Sbjct: 61  MNRAGCQEIFMPMVQPGDLWKETGRWEYYGKELLRLKDRHDRDYCLGPTHEEVVTSLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G++ SY  MF +
Sbjct: 121 EVRSYRQLPLNLYQIQTKFRDEIRPRFGLMRCREFIMKDAYSFDRDEAGAQKSYQTMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP--IPSENTD 238
           Y R F RLGL+   + A+SG IGG +SHEF+VLA TGE  +              +E   
Sbjct: 181 YTRAFQRLGLQFRAVEADSGAIGGSVSHEFMVLAATGEDTIASCAACEFAANLEKAEVVV 240

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             D        E    P      V     F  +  ++ V
Sbjct: 241 PTDHPVGLCEAEASEVPTPGKHTVDEVATFLGVGADRIV 279



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/192 (38%), Positives = 111/192 (57%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           Q  A   A +D+ +    D  P    +    +GIEVGH+F  GTKYS PM A +   +GK
Sbjct: 373 QRDAAITAYADLRDVTSGDPCPRCGGELRFPQGIEVGHVFNLGTKYSAPMQALYLDENGK 432

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +  + MG YGIG  R++AA IE +HD  GI++P S+AP++I+L+ +   ++  R   E  
Sbjct: 433 EREMVMGCYGIGVSRILAAAIEQNHDASGIMFPPSIAPYEIALLCLDTKNEEVRTKAEAF 492

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L + G DV +DD  E+ G +F  ADL+G PLQV+ G K V+   VE+K R TG + +
Sbjct: 493 YETLQEQGVDVLYDDRVERPGFKFKDADLMGLPLQVVFGGKGVARGIVEVKDRRTGEKAE 552

Query: 429 MSLEEVINYASH 440
           + L+ +    + 
Sbjct: 553 LPLDGLAEAFAS 564


>gi|291280439|ref|YP_003497274.1| prolyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
 gi|290755141|dbj|BAI81518.1| prolyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
          Length = 573

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 130/282 (46%), Positives = 179/282 (63%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLP L+E+P +AE+ SHK MLR GMI + + GIY++LP G K +  V  I+R+ 
Sbjct: 1   MRLSQYFLPTLREDPSEAEVVSHKFMLRAGMIRKVAAGIYNYLPAGLKVIKKVENIVRKY 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +  A+LW+ESGR++ YGKE+LRL DR+D+    GPTHEEV+TDI R+
Sbjct: 61  MNEAGAIELLMPAVVPAELWIESGRWNVYGKELLRLKDRHDRDFCIGPTHEEVVTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+  EG++ SY  M+ +
Sbjct: 121 EVKSYKQLPLNLYQIQTKFRDEVRPRFGLMRGREFIMKDAYSFDVDDEGAEKSYMLMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF   GL+ + + A+SG IGG+ SHEF+V ADTGE  V    +  DF    E     
Sbjct: 181 YCKIFEACGLEYVVVEADSGAIGGNFSHEFMVTADTGEDFVISCTNC-DFAANIEKAPIL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           D   ++    +        +      + D L        + +
Sbjct: 240 DEGVVSDEPLKEPEIVTTKNIKKVVDVADYLGIPPHKHVKTL 281



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/234 (32%), Positives = 115/234 (49%), Gaps = 10/234 (4%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             + ++   K+F+      +    +  +  +  V+ +        D  N    D     K
Sbjct: 343 YADYEIKYMKNFVLGVNEKDKHQINSNLGRDFEVDGFG-------DFRNAVPGDKCARCK 395

Query: 276 R---VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           +      +GIEVGHIF  GTKYS  M+A +   DGK   + MG YGIG  R  AA IE +
Sbjct: 396 KGEYKITKGIEVGHIFKLGTKYSKAMNAYYLDKDGKQKLMVMGCYGIGIGRTAAAAIEQN 455

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           HD KGIIWP  +APF++ ++ I  + +   +  E +Y +L     DV  DD  E+ G +F
Sbjct: 456 HDEKGIIWPVQIAPFEVVIVPINTNSEDVVNLSETLYLKLKNNNVDVLIDDRDERAGVKF 515

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             ADL+G+PL++ VG+K ++   VEI  R T    ++  E+ I        + R
Sbjct: 516 NDADLVGYPLRINVGAKALAKGNVEIFIRKTKETVEVKKEDAIAKTMQLLDDLR 569


>gi|115315107|ref|YP_763830.1| threonine--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|122324891|sp|Q0BL41|SYT_FRATO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115130006|gb|ABI83193.1| threonine--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
          Length = 634

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 143/442 (32%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L      + S GI  W   G +    V   +R   N+ G
Sbjct: 230 YLNMLEEAEKRDHRKIGKVLDLF--HFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG    Y + M       ++     P +      ++ + + SY
Sbjct: 288 CSEIRTPLIADFSLWQKSGHASKYAENMF-ATKSENRDFAIRPMNCPTCVQVYNTKLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R+E      G++R R F   D + F    +  +     +   +   
Sbjct: 347 RDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIFCTPEQVEEEVILMVQQCFEV- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++    P       E                   D          D    
Sbjct: 406 YKDFGFNDFAVKIALRPENRIGDDE-----------------TWDKSEQILKNALDANNV 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    + H   L D++  + +     ++       G        AT+  
Sbjct: 449 SYELFPGEGAFYGPKIEFH---LKDAIGRSWQCGTIQLDFSMPQRLG--------ATYID 497

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G+    V +    +G++     ++   + G   +W   V    + + N         D
Sbjct: 498 KNGEKQVSVMLHRAIVGSLERFIGMLIEHYAGNLPLWLAPVQVAVMGISN------NQDD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C++++  L K G     D   E+IG +     LL  P  VI+G        + I+    
Sbjct: 552 YCKEVFIMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIRKHSG 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+++   +   +    
Sbjct: 612 EDLGQMSVDDFCAFLDKQIQAK 633


>gi|89256700|ref|YP_514062.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|156502860|ref|YP_001428925.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010452|ref|ZP_02275383.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368007|ref|ZP_04984027.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|290954131|ref|ZP_06558752.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312449|ref|ZP_06803221.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|122999730|sp|Q2A2J0|SYT_FRATH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223341|sp|A7NDB6|SYT_FRATF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|89144531|emb|CAJ79846.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|134253817|gb|EBA52911.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|156253463|gb|ABU61969.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 634

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 143/442 (32%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L      + S GI  W   G +    V   +R   N+ G
Sbjct: 230 YLNMLEEAEKRDHRKIGKVLDLF--HFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG    Y + M       ++     P +      ++ + + SY
Sbjct: 288 CSEIRTPLIADFSLWQKSGHASKYAENMF-ATKSENRDFAIRPMNCPTCVQVYNTKLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R+E      G++R R F   D + F    +  +     +   +   
Sbjct: 347 RDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIFCTPEQVEEEVILMVQQCFEV- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++    P       E                   D          D    
Sbjct: 406 YKDFGFNDFAVKIALRPENRIGDDE-----------------TWDKSEQILKNALDANNV 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    + H   L D++  + +     ++       G        AT+  
Sbjct: 449 SYELFPGEGAFYGPKIEFH---LKDAIGRSWQCGTIQLDFSMPQRLG--------ATYID 497

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G+    V +    +G++     ++   + G   +W   V    + + N         D
Sbjct: 498 KNGEKQVSVMLHRAIVGSLERFIGMLIEHYAGNLPLWLAPVQVAVMGISN------NQDD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C++++  L K G     D   E+IG +     LL  P  VI+G        + I+    
Sbjct: 552 YCKEVFIMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIRKHSG 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+++   +   +    
Sbjct: 612 EDLGQMSVDDFCAFLDKQIQAK 633


>gi|160880797|ref|YP_001559765.1| threonyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|160429463|gb|ABX43026.1| threonyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 584

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 87/438 (19%), Positives = 162/438 (36%), Gaps = 42/438 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L   +E   RD      +L L T M  +   G   +LP G    + +    R+   R G
Sbjct: 184 YLKQQEEAKLRDHRKLGKELELFTFM--EEGPGFPFFLPKGMVIKNLLLDYWRKLHEREG 241

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+S P + + +LW  SG +D Y + M      +D+     P +      ++ S  +SY
Sbjct: 242 YVEISTPMMLNRNLWETSGHWDHYKENM-YQTKIDDEIYAIKPMNCPGGMLVYGSKPRSY 300

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP  F ++ L  R E   +  G+MR R F   DA+   +T E  K     +      +
Sbjct: 301 KELPLRFGELGLVHRHEKSGQLHGLMRVRCFTQDDAH-LFMTEEQIKDEIKGVVRLIDEV 359

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G     +   + P     S E                   +    +     +++  
Sbjct: 360 YKKFGFTY-HVELSTRPENSIGSLE-----------------DWEIATDALKMALEEMEL 401

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H   L DS+    +  +  ++    F    ++       + G
Sbjct: 402 PYLINEGDGAFYGPKIDFH---LKDSIGRTWQCGSIQLD----FQLPLRF----GIEYIG 450

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G++     ++   + G+   W   V    +++       +   D
Sbjct: 451 ADGEAHRPIMIHRVIFGSIERFFGILIEHYAGRFPTWLAPVQVKILTV------SEQFND 504

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + I   L + G  V  D   E++G +   A L   P  +I+G   + + +V + +R  
Sbjct: 505 YAQDILMELKQQGIRVSLDSRSEKLGYKVREARLDKIPYVLIIGQMEMENKQVSVWNREE 564

Query: 424 GIREDMSLEEVINYASHR 441
           G      +E++I+     
Sbjct: 565 GDLGGYVVEDLISLIKKE 582


>gi|297565426|ref|YP_003684398.1| threonyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
 gi|296849875|gb|ADH62890.1| threonyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
          Length = 652

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 144/443 (32%), Gaps = 33/443 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y     +   RD      +L L T +  +  KG+  WLP G      +   + E++   G
Sbjct: 241 YLWRQEEAKKRDHRKLGAELELFT-ISEEVGKGLPLWLPKGAFIRKQLEQYMYEKEQEYG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + S+ L+  SG    Y  +M    +   +     P +      I+++ ++SY
Sbjct: 300 YDYVITPHIASSKLYYTSGHLPYYKDDMYAPIEIEGEEYYLKPMNCPHHHMIYKARLRSY 359

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +    +R EL     G+ R R F   DA+ +    + +      +   +  +
Sbjct: 360 RDLPLRLAEFGTVYRFELSGTLSGLARVRGFTQNDAHIYCSKSQVTDEFIK-VIQLFDEV 418

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G+     R                  +    +        D  I +     +   +
Sbjct: 419 YKDFGISDYWFRLSLPDF------------ENNPEKFGQPGPHWDEAIAAIRAALEQTGA 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                      Y    DV    +   L + + ++   ++      FG          F  
Sbjct: 467 QFVEGIGEATFYGPKLDVQIRSV---LGKEESIATNQLDFISGQRFG--------LEFTN 515

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G+    V +    +G+     A       G   +W             I        +
Sbjct: 516 EKGEKEVPVIIHRAIMGSFDRFFAFYLEHTAGNFPLW------LSPIQAVIVPIADRHLE 569

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I   +      V  DD  E++ ++   A+L   PL ++VG K   +  + ++ R  
Sbjct: 570 YARQIAQAMKAAKLRVEVDDRPERMNAKIRDAELQKIPLILVVGDKEQEEGTINLRERQA 629

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
             +  + LEE+I     R  N +
Sbjct: 630 KAQRTLKLEELIGEMQERVRNRK 652


>gi|126658692|ref|ZP_01729837.1| Threonyl-tRNA synthetase, class IIa [Cyanothece sp. CCY0110]
 gi|126619954|gb|EAZ90678.1| Threonyl-tRNA synthetase, class IIa [Cyanothece sp. CCY0110]
          Length = 642

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 157/442 (35%), Gaps = 39/442 (8%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L   +E  R D      +L L +  I +    G+  W P G      +    R+     
Sbjct: 234 YLKQQEEAKRRDHRKLGKELKLFS--IQEGAGGGLVFWHPRGATMRYIIEDYWRKAHLDG 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + + +LW  SG +D Y + M    D  ++A    P +       +++ + S
Sbjct: 292 GYELLYTPHVANLELWKTSGHFDFYRENMFDSMDIEEQAYQIKPMNCPFHVLTYKNDLHS 351

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR  P  + ++   +R E      G+MR R F   DA+ F L P         +     +
Sbjct: 352 YREFPLRWAELGTVYRYERSGVLHGLMRVRGFTQDDAHIFCL-PTQIAAEILGVLNLTEK 410

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G K   +   + P     + E                   +    +     +   
Sbjct: 411 ILSDFGFKDYEVNLSTRPEKSVGTDE-----------------GWELATQALVEALNSKS 453

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 +   A Y    D+   K+ D++    + S   ++    F    ++ +   A   
Sbjct: 454 WEYIEDKGGGAFYGPKIDI---KIKDAIGRTWQCSTIQVD----FNLPERFDMEYVAA-- 504

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               +   + +     G++     ++    +     +P  +AP ++ L+ +    +  R+
Sbjct: 505 -DGSRQRPIMIHRAIFGSLERFYGILI---ENYAGDFPLWLAPIQLRLLPV---SEAQRE 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E + A L + G  V  D  GE++G Q   A+L   P+  IVG+K V    + I+ R  
Sbjct: 558 YGETVVATLKEAGYRVEIDCTGERLGKQIRKAELEKIPVVAIVGNKEVETQSLSIRTRQQ 617

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M L E+        +N 
Sbjct: 618 GDIGTMDLTELKKSLDDAIANK 639


>gi|319935875|ref|ZP_08010301.1| threonyl-tRNA synthetase [Coprobacillus sp. 29_1]
 gi|319809142|gb|EFW05623.1| threonyl-tRNA synthetase [Coprobacillus sp. 29_1]
          Length = 581

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 160/444 (36%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E   RD +    +L L   M+ +++ G+  +LP G    + +     +E  +
Sbjct: 173 QAYLDFLEEAKKRDHKKLGRELDLF--MMSEYAPGMPFFLPHGMLLRNELEKFWYDEHTK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + S +LW  SG + +Y + M      +++     P +      ++++ + 
Sbjct: 231 EGYEFIKTPIMMSKELWEVSGHWYNYKENMYTSL-VDEREFAIKPMNCPGSLLVYKNGLH 289

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    ++    R E      G+ R R F   DA+ F +TP+  +    ++     
Sbjct: 290 SYKDLPIRMGELGQVHRHEASGALNGLFRVRTFTQDDAHIF-MTPDQIESEVVRLIAFID 348

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           R++  LGL        + P                E +     +  +    +        
Sbjct: 349 RVYSMLGLSYDI-ELSTRP----------------EEKYIGELEIWEKSEAALAAACQAA 391

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I     A Y    D H   + DSL    +     +++                T+
Sbjct: 392 GKDYKINPGDGAFYGPKLDFH---VKDSLGRVWQCGTIQLDMNLP--------ERFDLTY 440

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +G+    V +     G++     ++     G   +W          +  I   ++  
Sbjct: 441 VDQNGEKVRPVMVHRVIFGSIERFIGILIEHFAGAFPLWLA-----PAQVKVIPVKNEYH 495

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  ++I+  L   G  V  DD  E++G +   A +   P Q+++G K   +  V  +  
Sbjct: 496 LDYSQEIFKLLEAKGIRVEIDDREEKLGYRIREAQMKKIPYQLVLGDKERDERTVTYRQY 555

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
               +  +SL+E I     +  + 
Sbjct: 556 GEQKQTTVSLDEFICMILKQIEDK 579


>gi|319892730|ref|YP_004149605.1| Threonyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162426|gb|ADV05969.1| Threonyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|323464237|gb|ADX76390.1| threonyl-tRNA synthetase [Staphylococcus pseudintermedius ED99]
          Length = 645

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 153/445 (34%), Gaps = 31/445 (6%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQLLEERKERDHRRIGKEMELFTNN-QLVGAGLPLWLPNGATIRREIERYIVDKEIS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHI 122
            G   +  P + + DL+  SG +D Y ++M        D+AM+  P +      I+ +  
Sbjct: 288 LGYDHVYTPVMANVDLYKTSGHWDHYQEDMFPPMQLDADEAMVLRPMNCPHHMMIYANKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++    L
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDAHIFVRPDQIKEEFKRVVQMIL 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G +    R                     + + +   D  +          D++
Sbjct: 408 DVYEDFGFEDYKFRLS-------------YRDKADKEKYYDDDDMWNTAEAMLKEAVDEM 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    DV   ++  ++ + + +S   ++    F            T+
Sbjct: 455 NLPYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLP----KKFELTY 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG+ H   +   G+ +         +           +    +     I  ++ +  
Sbjct: 504 IGKDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPQQVE----IIPVNNDLHY 559

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +I+  L   G  V  DD  E++G +   A +   P Q++VG K + +++V ++   
Sbjct: 560 DYARQIHDELKSQGVRVHIDDRNEKMGYKIREAQMKKIPYQLVVGDKELENNEVNVRQYG 619

Query: 423 TGIREDMSLEEVINYASHRFSNNRP 447
           +  ++ +  +  I          + 
Sbjct: 620 SKDQKTVEKDTFIWDLVDEIRLKKQ 644


>gi|319783887|ref|YP_004143363.1| threonyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169775|gb|ADV13313.1| threonyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 658

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 151/445 (33%), Gaps = 39/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +  +L+E   RD      ++ L      +   G+  W   G K   N+   +R   + 
Sbjct: 233 EAYQTMLEEAEKRDHRKIGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVNYMRRRLDE 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 QGYQEVNAPQVLDKSLWETSGHWGWYRDAMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 351 KHGLKSYRDLPVKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQLAAECLRIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G   I ++  + P     + E    A+            M   + +  T
Sbjct: 411 -DLILSTYADFGFDEISVKLSTRPDKRVGTDEAWDHAEA----------IMGGVLETIRT 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              + I   SI     A Y    +     L D++    +     ++      FG      
Sbjct: 460 RSGNRIK-TSINPGEGAFYGPKFEY---VLKDAIGREWQCGTTQVDFNLPERFG------ 509

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  ++ G   +W   +     ++     
Sbjct: 510 --AFYIGSDSEKKQPVMVHRAICGSMERFLGILIENYSGHFPLWFAPLQVVVATIT---- 563

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++ A+L   G     D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 564 --SDADDYATEVVAKLKAAGLLAEADLRNEKINYKVREHSLAKVPVILVCGKREAEEQTV 621

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E + L++ I   +  
Sbjct: 622 NMRRLGSRDQESLGLDQAIAQLTEE 646


>gi|57867165|ref|YP_188820.1| threonyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251811076|ref|ZP_04825549.1| threonyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875897|ref|ZP_06284764.1| threonine--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|71153576|sp|Q5HNM1|SYT_STAEQ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57637823|gb|AAW54611.1| threonyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251805411|gb|EES58068.1| threonyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294922|gb|EFA87449.1| threonine--tRNA ligase [Staphylococcus epidermidis SK135]
          Length = 645

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 151/444 (34%), Gaps = 31/444 (6%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLKMLEERRERDHRKIGKDLELFTNN-QLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++   M+  P +      I+++  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPAMKLDEDEAMVLRPMNCPHHMMIYKNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++     
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIQ 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G +    R            +     D  E          +          D++
Sbjct: 408 DVYKDFGFEDYRFRLS-----YRDPEDKHKYFDDDEM--------WEKAESMLKEASDEL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    DV   ++  ++ + + +S   ++    F    ++      T+
Sbjct: 455 GLTYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERFD----LTY 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG+ H   +   G+ +         +           +    +I  +NI  H     
Sbjct: 504 IGQDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPMQVEIIPVNIDLH----Y 559

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D    +   L   G  V  DD  E++G +   A +   P Q++VG + V + +V ++   
Sbjct: 560 DYARLLQDELKSQGVRVEIDDRNEKMGYKIREAQMKKIPYQIVVGDQEVENQEVNVRKYG 619

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           +  +E +  +E I          +
Sbjct: 620 SEKQESVEKDEFIWNVIDEIRLKK 643


>gi|223041831|ref|ZP_03612021.1| prolyl-tRNA synthetase [Actinobacillus minor 202]
 gi|223017400|gb|EEF15821.1| prolyl-tRNA synthetase [Actinobacillus minor 202]
          Length = 317

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 122/243 (50%), Positives = 159/243 (65%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFNDRGNRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E  +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAV 239

Query: 241 DII 243
            + 
Sbjct: 240 AVG 242


>gi|153947724|ref|YP_001400022.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|170023340|ref|YP_001719845.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|166980172|sp|A7FFJ4|SYP_YERP3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701362|sp|B1JQI5|SYP_YERPY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152959219|gb|ABS46680.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|169749874|gb|ACA67392.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
          Length = 572

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 122/235 (51%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +       D+    E
Sbjct: 181 YSKIFSRMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVF-STGSDYAANIE 234



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/188 (38%), Positives = 110/188 (58%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M AT +G DG++  + MG 
Sbjct: 384 VADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVMTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     ++  E++Y  L   
Sbjct: 444 YGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVKELAEELYTTLRSH 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE K+R  G ++ +   E++
Sbjct: 504 GIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVEYKNRRVGEKQMIKTSEIV 563

Query: 436 NYASHRFS 443
            +   +  
Sbjct: 564 EFLLSQIK 571


>gi|49475537|ref|YP_033578.1| threonyl-tRNA synthetase [Bartonella henselae str. Houston-1]
 gi|73919770|sp|Q6G3K1|SYT_BARHE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49238343|emb|CAF27567.1| Threonyl-tRNA synthetase [Bartonella henselae str. Houston-1]
          Length = 658

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 156/445 (35%), Gaps = 39/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L      +   G+  W   G K   N+   +R   + 
Sbjct: 233 KAYLHMLEEAEKRDHRRLGREMNLF--HFQEEGPGMIFWHKKGWKMFQNLINYMRRRLDD 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIF 118
               E++ P +    LW  SG ++ Y + M +     +           P +      IF
Sbjct: 291 HQYAEVNAPQVLDRSLWEISGHWEWYKENMFKAIPAAEDWDNENVYALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + +    N  
Sbjct: 351 KHGLKSYRDLPTRIAEFGVVHRYEPSGSLHGLMRVRCFTQDDAHIFCTDEQLADECLNIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G K I ++  + P     S      A+          + M+  + +  T
Sbjct: 411 -DLILSTYADFGFKEISLKLSTRPEKRVGSDALWDHAE----------NIMESVLKTIET 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                I   SI+    A Y    +     L D++    +     ++    F    ++   
Sbjct: 460 KSAGQIK-TSILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQLD----FNLPERF--- 508

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            +A +   D +      +     G+M     ++  +  G   +W         ++     
Sbjct: 509 -NAFYIDKDSEKRQPVMIHRAIFGSMERFLGILIENFSGHMPLWFAPEQIVVATIT---- 563

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  +K+ A+L  VG     D   E+I  +     L   P+ ++ G +    + V
Sbjct: 564 --SEANEYAKKLTAKLKSVGLSTTLDLRNEKINYKIREHSLQKVPVILVCGKRESETNSV 621

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +  +S+EEVI    + 
Sbjct: 622 NMRRLGSTEQIFLSVEEVIEQLKNE 646


>gi|87198229|ref|YP_495486.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123749972|sp|Q2GBX1|SYT_NOVAD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|87133910|gb|ABD24652.1| Ser-tRNA(Thr) hydrolase [Novosphingobium aromaticivorans DSM 12444]
          Length = 664

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 83/450 (18%), Positives = 141/450 (31%), Gaps = 48/450 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD     +++ L    + Q + G   W P G      + A +R   +  G 
Sbjct: 240 LTRLEEAAKRDHRKLGNEMDLF--HLQQEAHGSVFWHPKGYLIWRELEAYMRRAIDGAGY 297

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-------------RNDKAMIYGPTHEEV 113
            E+  P +  A  W +SG +  Y + M  + D              +   M   P +   
Sbjct: 298 REVKTPQVMDARQWEQSGHWGKYRENMFVIPDEVPNVDDEGPIVSNDADWMALKPMNCPA 357

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFR  IKSYR LP   Y+     R+E      G+MR R+F   DA+ F    +    
Sbjct: 358 HVLIFRQGIKSYRELPLRLYENGCCHRNEPHGALHGLMRVRQFTQDDAHIFCREDQIVSE 417

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                     RI+   G      +    P     + E    A+                 
Sbjct: 418 -VQAFCELADRIYKHFGFTYSI-KLALRPEKRFGTEEMWDKAERELRDAVVRAGLATEEY 475

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
             E             +    A YA   + H   L D++    +V     +         
Sbjct: 476 GWEE------------LPGEGAFYAPKLEWH---LTDAIGRTWQVGTIQSDRVLP----- 515

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                + A++ G DG+ H    +     G+      ++     G+  +W   V     ++
Sbjct: 516 ---ERLDASYIGEDGEKHRPVMLHRAIFGSYERFIGILIEHFAGRLPVWLAPVQAVVATI 572

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +          D      A+L   G     D   E+I  +     L   P  ++VG +  
Sbjct: 573 V------SDADDYARDALAKLKAAGIRADTDLRNEKINYKVREHSLQKVPYLLVVGKREA 626

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +  V I+      ++ M L+E I      
Sbjct: 627 EEGTVAIRILGEQHQKVMPLDEAIALLKGE 656


>gi|254369559|ref|ZP_04985570.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122513|gb|EDO66648.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 634

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 143/442 (32%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L      + S GI  W   G +    V   +R   N+ G
Sbjct: 230 YLNMLEEAEKRDHRKIGKVLDLF--HFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG    Y + M       ++     P +      ++ + + SY
Sbjct: 288 CSEIRTPLIADFSLWQKSGHASKYAENMF-ATKSENRDFAIRPMNCPTCVQVYNTKLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R+E      G++R R F   D + F    +  +     +   +   
Sbjct: 347 RDLPIRMAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIFCTPEQVEEEVILMVQQCFEV- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++    P       E                   D          D    
Sbjct: 406 YKDFGFNDFAVKIALRPENRIGDDE-----------------TWDKSEQMLKNALDANNV 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    + H   L D++  + +     ++       G        AT+  
Sbjct: 449 SYELFPGEGAFYGPKIEFH---LKDAIGRSWQCGTIQLDFSMPQRLG--------ATYID 497

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G+    V +    +G++     ++   + G   +W   V    + + N         D
Sbjct: 498 KNGEKQVSVMLHRAIVGSLERFIGMLIEHYAGNLPLWLAPVQVAVMGISN------NQDD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C++++  L K G     D   E+IG +     LL  P  VI+G        + I+    
Sbjct: 552 YCKEVFIMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIRKHSG 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+++   +   +    
Sbjct: 612 EDLGQMSVDDFCAFLDKQIQAK 633


>gi|145598925|ref|YP_001163001.1| prolyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|166980173|sp|A4TL66|SYP_YERPP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145210621|gb|ABP40028.1| prolyl-tRNA synthetase [Yersinia pestis Pestoides F]
          Length = 572

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 122/235 (51%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +       D+    E
Sbjct: 181 YSKIFSRMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVF-STGSDYAANIE 234



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/188 (38%), Positives = 110/188 (58%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M AT +G DG++  + MG 
Sbjct: 384 VADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEVMKATVQGEDGRNQVMTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     ++  E++Y  L   
Sbjct: 444 YGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVKELAEELYTTLRSH 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE K+R  G ++ +   E++
Sbjct: 504 GIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVEYKNRRVGEKQMIKTSEIV 563

Query: 436 NYASHRFS 443
            +   +  
Sbjct: 564 EFLLSQIK 571


>gi|253689709|ref|YP_003018899.1| prolyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259511609|sp|C6DDF6|SYP_PECCP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|251756287|gb|ACT14363.1| prolyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 572

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLWVESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWVESGRWDQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQVTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L    ++A++G IGG+ SHEF VLA +GE  +       D+    E
Sbjct: 181 YSQIFSRMDLDFRAVQADTGSIGGNASHEFQVLAASGEDDIVF-STDSDYAANIE 234



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/187 (37%), Positives = 109/187 (58%), Gaps = 3/187 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF  G+KYS  + AT +G DG++  + MG 
Sbjct: 384 VADIRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGSKYSEALKATVQGEDGRNQTLTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD +GIIWPD++APF ++++ +  H     ++  E IY +L   
Sbjct: 444 YGIGVTRVVAAAIEQNHDERGIIWPDAIAPFHVAILPMNMHKSFRVKEVAEDIYQQLRAK 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  FA  +L+G P  +++G + +   ++E KHR  G ++ +   E++
Sbjct: 504 GIEVLLDDRKERPGVMFADMELIGVPHTIVIGDRNLDSEEIEYKHRRIGEKQMIKTNEIV 563

Query: 436 NYASHRF 442
           ++     
Sbjct: 564 DFLLANI 570


>gi|156548890|ref|XP_001606543.1| PREDICTED: similar to ENSANGP00000011343 [Nasonia vitripennis]
          Length = 430

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 134/453 (29%), Positives = 219/453 (48%), Gaps = 38/453 (8%)

Query: 2   RRSKYFLPILQENPR-----DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAI 56
           R SK F P +          D    S++LM+  G+I   + G+Y++LPLG ++L  +  +
Sbjct: 6   RVSKLFQPSIVIPKSSLPKIDLTSKSYQLMINAGIISNVATGMYAFLPLGLRSLQKLINL 65

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           I +E    GA ++ +P L   +LW ++ R      E+  L DR+ K  +  PT+EE +++
Sbjct: 66  IDQEMTAIGAQKILLPVLTQTNLWQQTARLKQAQSELFMLNDRHGKEFLLSPTYEESISN 125

Query: 117 IFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +         + LP   YQ   K+RDE++PR G++RSREF+MKD Y+FDL  + +K +Y 
Sbjct: 126 MISQVGPLQRKQLPLRLYQTSSKWRDEIKPRLGLLRSREFIMKDLYTFDLDADSAKCTYE 185

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++  +Y +IF R+G+    + A++G IGG +SHE+  ++D GE  +   K          
Sbjct: 186 EVSDAYKKIFERIGIPYKKVIADTGIIGGSISHEYHYVSDIGEDVILSCKSCKYE----- 240

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                     V   K      E   +S   IEVGH F  GTKYS
Sbjct: 241 -----------------------VDKVDEPKTRCPKCEEPLISTNSIEVGHTFLLGTKYS 277

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            P+ ATF  ++ K  +++MG YG+G  R++A  IE       I WP  +AP  I +I  K
Sbjct: 278 KPLKATFVDSNCKKQFLEMGCYGLGLTRILATAIEILSTNLEIRWPLELAPHSICVIPPK 337

Query: 356 A--HDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVS 412
               ++        +Y+ +     DV +DD     IG +F  A   G+P+ +I+G   ++
Sbjct: 338 KGSKEEAKAQLAYDVYSTIQNCNLDVIFDDRVDMTIGKRFIDARKTGYPVVIIIGKSCLA 397

Query: 413 DS-KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D   VE+ +       +++LE V+ +       
Sbjct: 398 DKPLVEVHNVYKASHVNLALENVVEHVKGLLKK 430


>gi|113461448|ref|YP_719517.1| prolyl-tRNA synthetase [Haemophilus somnus 129PT]
 gi|123031424|sp|Q0I4S8|SYP_HAES1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|112823491|gb|ABI25580.1| prolyl-tRNA synthetase [Haemophilus somnus 129PT]
          Length = 571

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 121/243 (49%), Positives = 163/243 (67%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSKYLLSTLKETPNDAQVVSHQLMLRAGMIRPLASGLYNWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ES R++ YG E+LR  DR ++  + GPTHEEV+TD+   
Sbjct: 61  MNKSGAIEVEMPVVQPAELWQESQRWEQYGPELLRFVDRGNRDFVLGPTHEEVITDLVHR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF  + E  +++Y+ M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHTSKECLQNTYDVMYRT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  +  S +  D+    E  +  
Sbjct: 181 YNNIFTRLGLDFRAVQADTGSIGGSASHEFQVLAKSGEDDIVFSSN-SDYAANIELAEAV 239

Query: 241 DII 243
            I 
Sbjct: 240 AIG 242



 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 107/189 (56%), Gaps = 4/189 (2%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M AT +G DG+   + MG 
Sbjct: 382 VADLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRPQTMIMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSK 374
           YGIG  RVVAA IE  HD K  I   D +APF +++I +     +  +   E++Y  L  
Sbjct: 442 YGIGVSRVVAATIEQCHDEKGIIWSSDEIAPFTVAIIPMNMYKSKNVQIFAEELYQSLLN 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              DV +DD  E+ G  FA  +L+G P  +++G K +   ++E K+R TG ++ ++ E+V
Sbjct: 502 KNVDVIFDDRKERPGVMFADMELIGVPHMIVIGEKNLEKGEIEYKNRRTGEKQIIAKEQV 561

Query: 435 INYASHRFS 443
           +++ + R +
Sbjct: 562 LDFLAQRVN 570


>gi|170718445|ref|YP_001783662.1| prolyl-tRNA synthetase [Haemophilus somnus 2336]
 gi|189083500|sp|B0UWK9|SYP_HAES2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|168826574|gb|ACA31945.1| prolyl-tRNA synthetase [Haemophilus somnus 2336]
          Length = 571

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 121/243 (49%), Positives = 163/243 (67%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSKYLLSTLKETPNDAQVVSHQLMLRAGMIRPLASGLYNWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ES R++ YG E+LR  DR ++  + GPTHEEV+TD+   
Sbjct: 61  MNKSGAIEVEMPVVQPAELWQESQRWEQYGPELLRFVDRGNRDFVLGPTHEEVITDLVHR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF  + E  +++Y+ M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHTSKECLQNTYDVMYRT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  +  S +  D+    E  +  
Sbjct: 181 YNNIFTRLGLDFRAVQADTGSIGGSASHEFQVLAKSGEDDIVFSSN-SDYAANIELAEAV 239

Query: 241 DII 243
            I 
Sbjct: 240 AIG 242



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 107/189 (56%), Gaps = 4/189 (2%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M AT +G DG+   + MG 
Sbjct: 382 VADLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRPQTMIMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSK 374
           YGIG  RVVAA IE  HD K  I   D +APF +++I +     +  +   E++Y  L  
Sbjct: 442 YGIGVSRVVAATIEQCHDEKGIIWSSDEIAPFTVAIIPMNMYKSKNVQIFAEELYQSLLN 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              DV +DD  E+ G  FA  +L+G P  +++G K +   ++E K+R TG ++ ++ E+V
Sbjct: 502 KNVDVIFDDRKERPGVMFADIELIGVPHMIVIGEKNLEKGEIEYKNRRTGEKQIIAKEQV 561

Query: 435 INYASHRFS 443
           +++ + R +
Sbjct: 562 LDFLAQRVN 570


>gi|260901781|ref|ZP_05910176.1| threonine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|308108104|gb|EFO45644.1| threonine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
          Length = 386

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 137/417 (32%), Gaps = 38/417 (9%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + Q + G+  W   G     ++   +R++ N     E+  P +    LW  SG +D Y  
Sbjct: 1   MQQEAPGMVFWHHNGWSIFRDLEVFVRDKLNEYDYQEVKGPLMMDRVLWERSGHWDKYAD 60

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVM 150
            M       ++     P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 61  AMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIM 119

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T    +             +   G  +I ++  + P     S E 
Sbjct: 120 RVRGFTQDDAHIFC-TESQIQEEVTSCIKMVYDTYQTFGFDNIVVKLSTRPEKRVGSDE- 177

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                             D    +     + +     I E   A Y    +     L+D 
Sbjct: 178 ----------------IWDQSEEALKQSLESMEIPYEIQEGEGAFYGPKIEF---TLYDC 218

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQMGSYGIGAMRVVAAVI 329
           L    +     ++       G        AT+ G + +    V +    +G++     ++
Sbjct: 219 LDRAWQCGTVQLDFNLPGRLG--------ATYVGENNERLVPVMIHRAILGSLERFIGIL 270

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              + G    W        +++              ++I  +L K G     D   E+IG
Sbjct: 271 IEEYAGFFPTWLAPEQAVLMNIT------DKQSGYVQEIVQKLQKSGIRAKADLRNEKIG 324

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +     L   P  ++VG + +   ++ ++ R         +++ I Y     S+ +
Sbjct: 325 FKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGKDLGKFKVDDFIAYIQDEISSRK 381


>gi|302342263|ref|YP_003806792.1| threonyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
 gi|301638876|gb|ADK84198.1| threonyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
          Length = 627

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 140/439 (31%), Gaps = 39/439 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      +L L +    +   G+  W   G      +    R E  R
Sbjct: 216 KQYLHMLEEAKKRDHRKLGKELDLFSFH-EEIGPGMVVWHNRGMMLRMVLEDFERREHLR 274

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L   +LW  SG YD+Y + M    + +  A    P +      I++S + 
Sbjct: 275 RGYQIVQGPQLLKRELWERSGHYDNYRENM-YFTEVDGTAYGVKPMNCLAHMLIYKSKMH 333

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP   +++    R E      G+ R R F   DA+      +        +     
Sbjct: 334 SYRDLPIRMFELGTVHRHEKSGVLGGLTRVRAFTQDDAHILCRPDQLEGE-IMGVMDFVG 392

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G         + P     S E                   +    +     +  
Sbjct: 393 EVMAIFGFDYGM-ELSTRPDKSIGSDE-----------------DWERATNALRKALEAS 434

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A Y    D    KL D+L    + +    +    F    ++ L   A  
Sbjct: 435 GRPYEINEGDGAFYGPKIDF---KLKDALGRQWQCATIQCD----FTLPERFDLTYIA-- 485

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +   +          R +  +IE              A             +   
Sbjct: 486 PDDSRQRPVMIHRVILGSLERFIGVLIEHYAGRFPFWLAPEQARVLTVT-------ERAD 538

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +++A L   G  V  D   E++G++   A LL  P  +++G + V + +V  + R 
Sbjct: 539 DWAREVFAALKNAGYRVEMDLRNEKLGAKVREAQLLKVPYMLVIGDREVDERQVAPRLRS 598

Query: 423 TGIREDMSLEEVINYASHR 441
                 + L  ++   + +
Sbjct: 599 GKNLPPLDLAGLLALFAEQ 617


>gi|22126985|ref|NP_670408.1| prolyl-tRNA synthetase [Yersinia pestis KIM 10]
 gi|45442549|ref|NP_994088.1| prolyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001]
 gi|108806542|ref|YP_650458.1| prolyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|108813091|ref|YP_648858.1| prolyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|149366930|ref|ZP_01888963.1| prolyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|162418775|ref|YP_001607747.1| prolyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165927072|ref|ZP_02222904.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939831|ref|ZP_02228371.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011913|ref|ZP_02232811.1| prolyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211331|ref|ZP_02237366.1| prolyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400131|ref|ZP_02305649.1| prolyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419446|ref|ZP_02311199.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425324|ref|ZP_02317077.1| prolyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167470133|ref|ZP_02334837.1| prolyl-tRNA synthetase [Yersinia pestis FV-1]
 gi|218928237|ref|YP_002346112.1| prolyl-tRNA synthetase [Yersinia pestis CO92]
 gi|229837776|ref|ZP_04457936.1| prolyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|229840998|ref|ZP_04461157.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229843099|ref|ZP_04463249.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229903534|ref|ZP_04518647.1| prolyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|270487315|ref|ZP_06204389.1| proline--tRNA ligase [Yersinia pestis KIM D27]
 gi|294503084|ref|YP_003567146.1| prolyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|116256081|sp|Q7CH25|SYP_YERPE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123246276|sp|Q1CFH2|SYP_YERPN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123372686|sp|Q1CAK9|SYP_YERPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701361|sp|A9R371|SYP_YERPG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|21960030|gb|AAM86659.1|AE013912_3 proline tRNA synthetase [Yersinia pestis KIM 10]
 gi|45437414|gb|AAS62965.1| prolyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001]
 gi|108776739|gb|ABG19258.1| prolyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|108778455|gb|ABG12513.1| prolyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|115346848|emb|CAL19734.1| prolyl-tRNA synthetase [Yersinia pestis CO92]
 gi|149290544|gb|EDM40620.1| prolyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|162351590|gb|ABX85538.1| prolyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165912234|gb|EDR30871.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165920968|gb|EDR38192.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989179|gb|EDR41480.1| prolyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207102|gb|EDR51582.1| prolyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962187|gb|EDR58208.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050839|gb|EDR62247.1| prolyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055724|gb|EDR65508.1| prolyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679304|gb|EEO75407.1| prolyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|229689975|gb|EEO82034.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229697364|gb|EEO87411.1| prolyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229704153|gb|EEO91165.1| prolyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|262361122|gb|ACY57843.1| prolyl-tRNA synthetase [Yersinia pestis D106004]
 gi|262365363|gb|ACY61920.1| prolyl-tRNA synthetase [Yersinia pestis D182038]
 gi|270335819|gb|EFA46596.1| proline--tRNA ligase [Yersinia pestis KIM D27]
 gi|294353543|gb|ADE63884.1| prolyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|320014203|gb|ADV97774.1| prolyl-tRNA synthetase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 572

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 122/235 (51%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +       D+    E
Sbjct: 181 YSKIFSRMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVF-STGSDYAANIE 234



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/188 (38%), Positives = 110/188 (58%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M AT +G DG++  + MG 
Sbjct: 384 VADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEVMKATVQGEDGRNQVMTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     ++  E++Y  L   
Sbjct: 444 YGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVKELAEELYTTLRSH 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE K+R  G ++ +   E++
Sbjct: 504 GIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVEYKNRRVGEKQMIKTSEIV 563

Query: 436 NYASHRFS 443
            +   +  
Sbjct: 564 EFLLSQIK 571


>gi|51597293|ref|YP_071484.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|186896398|ref|YP_001873510.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|81825738|sp|Q667L4|SYP_YERPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701360|sp|B2JZ09|SYP_YERPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|51590575|emb|CAH22216.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|186699424|gb|ACC90053.1| prolyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
          Length = 572

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDELRPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDELRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +       D+    E
Sbjct: 181 YSKIFSRMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVF-STGSDYAANIE 234



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/188 (38%), Positives = 110/188 (58%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M AT +G DG++  + MG 
Sbjct: 384 VADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVMTMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     ++  E++Y  L   
Sbjct: 444 YGIGVSRVVAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVKELAEELYTTLRSH 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE K+R  G ++ +   E++
Sbjct: 504 GIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVEYKNRRVGEKQMIKTSEIV 563

Query: 436 NYASHRFS 443
            +   +  
Sbjct: 564 EFLLSQIK 571


>gi|253999985|ref|YP_003052048.1| prolyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|253986664|gb|ACT51521.1| prolyl-tRNA synthetase [Methylovorus sp. SIP3-4]
          Length = 574

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 170/235 (72%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+   +E P++AE+ SH+LMLR G+I +   G+Y+W+PLG + L  V  ++R+E
Sbjct: 1   MRASQFFIATQKEAPQEAELPSHRLMLRAGLIKRLGSGLYTWMPLGLRVLRKVETVVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A+LW E+GR+D +G +ML++ DR++++  +GPTHEEV+TD+ R 
Sbjct: 61  MNKAGALELLMPAVQPAELWQETGRWDVFGPQMLKITDRHERSFCFGPTHEEVITDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF  + E  + +Y  M+ +
Sbjct: 121 EIKSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHTSLESLEATYASMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  +F+RLGLK   +RA++G IGGD SHEF VLAD+GE  +       D+    E
Sbjct: 181 YSNVFNRLGLKFRAVRADTGAIGGDGSHEFHVLADSGEDALAYC-PASDYAANVE 234



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/188 (35%), Positives = 108/188 (57%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K V    RGIEVGHIF   TKY+  M+AT++  +G+   ++MG 
Sbjct: 387 VADIRNVINGDPSPDGKGVLELCRGIEVGHIFQLRTKYAEAMNATYQAENGELKIMEMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE  +D +GII+P ++APF +++  I        +DA   +YA L + 
Sbjct: 447 YGIGVSRIVGAAIEQGNDARGIIFPAAMAPFSVAIAPIGMDRSDAVKDAALALYAELQQA 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD GE+ G  FA  +L+G P +V++G + + + +VE + R     + ++L E++
Sbjct: 507 GIDVLLDDRGERPGVMFADLELIGIPHRVVIGDRGLKEGQVEYQARTDEQAQSVALSEIV 566

Query: 436 NYASHRFS 443
           +      +
Sbjct: 567 SKLKQALA 574


>gi|161723258|ref|YP_094730.2| prolyl-tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|114152207|sp|Q5ZXN7|SYP_LEGPH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 569

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 134/398 (33%), Positives = 205/398 (51%), Gaps = 21/398 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P DAEIASH+LMLR+GMI +   G+Y+W+PLG + L  V  I+REE
Sbjct: 1   MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMPLGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+T A+E+ +P++Q A+LW E+GR++++G ++L + D N +   +GPTHEEV+TDI R+
Sbjct: 61  MNKTHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQREYCFGPTHEEVITDIMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+ E  + +Y  M+ +
Sbjct: 121 ELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLSLESLQETYKDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GLK   + A++G IGG  SHEF VLA++GE  +F S          + T   
Sbjct: 181 YCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLAESGEDLIFYSDASDYAANIEQATSLK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            + +     E  T       D  N+K  D +     +++       I        + +  
Sbjct: 241 PLKANQPCNETIT-----LVDTPNQKTIDEVASFLGIASNQTIKTLIVKGKEHPMVALVL 295

Query: 301 TFKGADGKDHYVQM-----------GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
                  +   ++                +  ++     I        +I          
Sbjct: 296 RGDDELNEVKAIKHPLVHAPLSFIDEELILKTLKTPLGSIGPIQLNIPVIVDHHALAMPS 355

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
            +      D+   +A  +          D  +D    +
Sbjct: 356 FVCGANQADKHFINAAWE-----RDAKYDDAYDLRNVK 388



 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 71/197 (36%), Positives = 109/197 (55%), Gaps = 3/197 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A Y    D+ N K  D  P+ K      RGIEVGH+F  G KY+  M+A+     G+
Sbjct: 373 ERDAKYDDAYDLRNVKEGDPSPDGKGTLHCCRGIEVGHVFQLGDKYAKAMNASVINEQGQ 432

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              + MG YG+G  RVVAA IE  HD  GIIWP ++APF++++I +  A  Q  ++  E 
Sbjct: 433 LQTMIMGCYGLGITRVVAAAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSQAVKEQAES 492

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y +L   G DV  DD  E+ G  FA  DL+G P +++V  + +    VE K R++   +
Sbjct: 493 LYQQLKSHGIDVLLDDRNERAGVLFADNDLIGIPHRLVVSERNLEQGCVEYKARISSETQ 552

Query: 428 DMSLEEVINYASHRFSN 444
            ++L++V+N+     + 
Sbjct: 553 LINLDKVVNFIIELINK 569


>gi|30249296|ref|NP_841366.1| prolyl-tRNA synthetase [Nitrosomonas europaea ATCC 19718]
 gi|81838727|sp|Q82UZ8|SYP_NITEU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|30180615|emb|CAD85228.1| Prolyl-tRNA synthetase [Nitrosomonas europaea ATCC 19718]
          Length = 568

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 127/292 (43%), Positives = 175/292 (59%), Gaps = 3/292 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL  L+E P +AE+ SH+LMLR G+I +   G+Y+W+PLG + L  +  IIREE
Sbjct: 1   MRVSQFFLATLKEAPAEAELISHRLMLRAGLIKRLGSGLYTWMPLGLRILHKIEHIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GA+E+ +P +  A+LW E+GR+D +G +ML++ DR+     +GPTHEEV+ DI R 
Sbjct: 61  MNNSGALELLMPAVHPAELWQETGRWDVFGPQMLKIQDRHKHDFCFGPTHEEVIVDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  + +Y  M  +
Sbjct: 121 EIKSYRQLPINFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHADVDSLEQTYRLMQET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GLK   + A++G IGG  SHEF VLAD+GE  +       D+    E  +  
Sbjct: 181 YSRIFTRIGLKFRAVAADTGAIGGSGSHEFHVLADSGEDAIAFC-PASDYAANIELAEAV 239

Query: 241 DIISLNSIVEQWTAPYAATSD--VHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                        A  A        +   F  +P  + + A  +  G  FY 
Sbjct: 240 PHGIPRKEPAGIMAKIATPDRKSCQDVADFLGIPVEQTLKALAVTAGGKFYL 291



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 69/183 (37%), Positives = 103/183 (56%), Gaps = 3/183 (1%)

Query: 261 DVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K V    RGIEVGH+F   TKYS  M AT+    G+   ++MG YG
Sbjct: 382 DIRNIVAGDPSPDGKGVLEICRGIEVGHVFQLRTKYSEKMKATYLDESGQTRIMEMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGC 377
           IG  R+VAA IE ++D +GII+P ++APF++S+I +     Q  R   EK+Y      G 
Sbjct: 442 IGVSRIVAAAIEQNYDERGIIFPQTIAPFQLSIIPVGYHKSQQVRTEAEKLYQACRSAGI 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G  FA  +L+G P ++++G + + +  VE + RL    + +SL E  + 
Sbjct: 502 EVLLDDREERPGVMFADQELIGIPHRIVIGERNLREGMVEYQGRLDKTPQMLSLSEAASI 561

Query: 438 ASH 440
            S 
Sbjct: 562 ISK 564


>gi|258543749|ref|ZP_05703983.1| proline--tRNA ligase [Cardiobacterium hominis ATCC 15826]
 gi|258520985|gb|EEV89844.1| proline--tRNA ligase [Cardiobacterium hominis ATCC 15826]
          Length = 567

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 132/304 (43%), Positives = 177/304 (58%), Gaps = 5/304 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+++L   +E P DAE+ SH+LMLR GMI Q++ G+YSWLPLG + L  V  IIREE
Sbjct: 1   MRLSRFWLTTQKETPADAEVISHQLMLRAGMIRQNALGVYSWLPLGLRVLRKVEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G++E+ +P +Q  +LW ESGR+  YG E+LR  DR+++    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGSLELLMPGVQPGELWQESGRWQDYGPELLRFLDRHEREYCLGPTHEEVITDLMRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF L     + +Y  M+ +
Sbjct: 121 DLSSYKQLPLNVYQIQTKFRDEIRPRFGVMRGREFLMKDAYSFHLDEASLQATYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y RIF RLGL   P+ A++G IGG  SHEF VLA TGE  +  S     +    E  +  
Sbjct: 181 YCRIFDRLGLDYRPVLADNGSIGGTGSHEFHVLAATGEDAIVFSSSGS-YAANLEKAEAL 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                  +  + +E+   P   T     EK    +    +        G I     +   
Sbjct: 240 RPTAPRPAPAAAMEKRPTPDCKTIAALVEKHGVPIERTIKTLMVAGAEGGIVALVIRGDH 299

Query: 297 PMSA 300
            ++A
Sbjct: 300 ELNA 303



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 72/203 (35%), Positives = 107/203 (52%), Gaps = 3/203 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
           +D     +I  +   P    +D+ N    D  P+        RGIEVGHIF  G KYS  
Sbjct: 362 EDDYHYFNINWERDVPLGKVADLRNIVEGDPAPDGSGTLAIRRGIEVGHIFQLGKKYSEA 421

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA- 356
           M    +  DG      MG YGIG  RVVAA IE +HD +GIIWP ++APF ++++ + A 
Sbjct: 422 MGLKIQLEDGGSAIPLMGCYGIGVTRVVAAAIEQNHDERGIIWPQAIAPFTVAILPLNAA 481

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                  A E +Y +L   G DV  DD G++ G  FA  DL+G P +V++  K +++ +V
Sbjct: 482 KSPEVMAAAEALYQKLLAAGVDVVLDDRGKRPGFMFADMDLIGIPARVVISDKTLANGEV 541

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
           E K R +   E ++L+ + +  +
Sbjct: 542 EYKERRSDSAEMVALDAIYDRLT 564


>gi|271501814|ref|YP_003334840.1| prolyl-tRNA synthetase [Dickeya dadantii Ech586]
 gi|270345369|gb|ACZ78134.1| prolyl-tRNA synthetase [Dickeya dadantii Ech586]
          Length = 572

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 126/235 (53%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYMLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR D+  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEISMPVVQPADLWQESGRWEQYGPELLRFVDRGDRPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EISSYKQLPLNFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQVTYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L   P++A++G IGG+ SHEF VLA +GE  +       D+    E
Sbjct: 181 YGKIFSRMDLDFRPVQADTGSIGGNASHEFQVLASSGEDDIVF-STESDYAANIE 234



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 3/185 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  + AT +G DG++  + MG Y
Sbjct: 385 ADIRNVVEGDRSPDGKGTLLIKRGIEVGHIFQLGKKYSEALKATVQGEDGRNQTLTMGCY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           GIG  RV+AA IE +HD +GIIWPD++APF+++++ +  H     ++  E IY +L   G
Sbjct: 445 GIGVTRVIAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVQEVAEGIYQQLRANG 504

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD  E+ G  FA  +L+G P  +++G + + + ++E KHR  G +E +   +++ 
Sbjct: 505 IDVLLDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDEIEYKHRRKGEKEMIKAGDIVE 564

Query: 437 YASHR 441
           +   +
Sbjct: 565 FLLSQ 569


>gi|240850680|ref|YP_002972080.1| threonyl-tRNA synthetase [Bartonella grahamii as4aup]
 gi|240267803|gb|ACS51391.1| threonyl-tRNA synthetase [Bartonella grahamii as4aup]
          Length = 658

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 156/445 (35%), Gaps = 39/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L      +   G+  W   G K   N+   +R   + 
Sbjct: 233 KAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGMIFWHKKGWKMFQNLINYMRRRLDD 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y + M ++        +       P +      IF
Sbjct: 291 HQYAEVNAPQVLDRSLWEISGHWGWYKENMFKVIPVAENSDHGNVYALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  L  R E      G+MR R F   DA+ F    + +    +  
Sbjct: 351 KHGLKSYRDLPIRLAEFGLVHRYEPSGSLHGLMRVRGFTQDDAHIFCTDEQLADECLSIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G K I ++  + P     S      A++           M+  + +  T
Sbjct: 411 -DLILSTYADFGFKEISLKLSTRPEKRVGSDALWDHAES----------IMESVLKTIET 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            F   I   SI+    A Y    +     L D++    +     I+      FG      
Sbjct: 460 KFAGQIK-TSILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQIDFNLPERFG------ 509

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   D +      +     G+M     ++  +  G   +W         ++     
Sbjct: 510 --AFYIDKDSEKRQPVMIHRAIFGSMERFLGILIENFAGHMPLWLAPEQVVVATIT---- 563

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  +KI A+L  +G     D   E+I  +     L   P+ ++ G +    + V
Sbjct: 564 --SEANEYAQKITAKLRAIGLSATIDLRNEKINYKIREHSLQKVPVILVCGKREAETNSV 621

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +  +S+E+VI   S+ 
Sbjct: 622 NMRRLGSTNKTLLSVEDVIKQLSNE 646


>gi|119774298|ref|YP_927038.1| prolyl-tRNA synthetase [Shewanella amazonensis SB2B]
 gi|152016599|sp|A1S4R2|SYP_SHEAM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119766798|gb|ABL99368.1| prolyl-tRNA synthetase [Shewanella amazonensis SB2B]
          Length = 572

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 135/306 (44%), Positives = 182/306 (59%), Gaps = 5/306 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YS+LP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVVSHQLMLRAGMIRRNASGLYSYLPTGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q  DLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKAGAIEILMPMVQPGDLWVETGRWDQFGPELLRFTDRHNRDFVLGPTHEEVITDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF LT E    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLTQETLDETYQAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL   P+ A++G IGG +SHEF VLA +GE  +       D+    E  +  
Sbjct: 181 YSNIFSRMGLAFRPVLADTGSIGGSVSHEFHVLAQSGEDLIAY-STGSDYAANIEKAEAP 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
               L +           T D  N K    L E   V+        I    T+ +  ++ 
Sbjct: 240 ----LPTEPRGEATEALRTVDTPNAKTIAELVEQFGVAIEKTIKTLIVKGATEEAPLVAL 295

Query: 301 TFKGAD 306
             +G  
Sbjct: 296 LVRGDH 301



 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 113/207 (54%), Gaps = 3/207 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLP 297
           +D      I  +   P    +D+ N    ++ P+ K   A  RGIEVGHIF  G KYS  
Sbjct: 364 EDGKHFFGINWERDLPLVQGADIRNVVEGEATPDGKGTYAFARGIEVGHIFQLGNKYSEA 423

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA- 356
           M+AT    +GK   + MG YG+G  R+VAA IE ++D +GI+WP+++APF + ++ +   
Sbjct: 424 MNATVLDENGKSQIMLMGCYGVGVSRIVAAAIEQNNDERGIVWPEAIAPFTVGILPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  E +Y  L++ G +V +DD  E+ G  FA  +LLG P  V++G + +     
Sbjct: 484 KSHRVTDTAEALYKELTEAGFEVLFDDRKERPGVMFADMELLGIPHTVVIGDRNIDTGVY 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG + ++   E++++   +F 
Sbjct: 544 EYKNRRTGEKTEVPFAELVSFLKAQFQ 570


>gi|329724705|gb|EGG61211.1| threonine--tRNA ligase [Staphylococcus epidermidis VCU144]
          Length = 645

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 151/444 (34%), Gaps = 31/444 (6%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLKMLEERRERDHRKIGKDLELFTNN-QLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++   M+  P +      I+++  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPAMKLDEDEAMVLRPMNCPHHMMIYKNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++     
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIQ 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G K    R            +     D  E          +          D++
Sbjct: 408 DVYKDFGFKDYRFRLS-----YRDPEDKHKYFDDDEM--------WEKAESMLKEASDEL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    DV   ++  ++ + + +S   ++    F    ++      T+
Sbjct: 455 GLTYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERFD----LTY 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG+ H   +   G+ +         +           +    +I  +N+  H     
Sbjct: 504 IGQDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPMQVEIIPVNVDLH----Y 559

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D    +   L   G  V  DD  E++G +   A +   P Q++VG + V + +V ++   
Sbjct: 560 DYARLLQDELKSQGVRVEIDDRNEKMGYKIREAQMKKIPYQIVVGDQEVENQEVNVRKYG 619

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           +  +E +  +E I          +
Sbjct: 620 SEKQESVEKDEFIWNVIDEIRLKK 643


>gi|73662391|ref|YP_301172.1| threonyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123761534|sp|Q49YB4|SYT_STAS1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72494906|dbj|BAE18227.1| threonyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 645

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 156/446 (34%), Gaps = 33/446 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      +L L +        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQMLEERKERDHRKIGKELELFSNNPL-VGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P + + DL+  SG +D Y ++M      ++   M+  P +      I+ +  
Sbjct: 288 MGYDHVYTPVMANVDLYKTSGHWDHYQEDMFPTMKLDEYEEMVLRPMNCPHHMMIYANKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++    +
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDAHIFVRPDQIKEEFKRVVNLII 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDD 241
            +++    ++   R                  D  + + +   D M     S      D+
Sbjct: 408 DVYNDFNFENYSFRLS--------------YRDPEDKEKYFDDDEMWIKAESMLKEAVDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  ++ + + +S   ++    F    K+      T
Sbjct: 454 LGLDYEEAIGEAAFYGPKLDV---QVQTAMGKEETLSTAQLD----FLLPQKF----ELT 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G DG+ H   +   G+ +         +           +    +I  +N+  H    
Sbjct: 503 YIGNDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVEIIPVNVDLH---- 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    I   L   G  V  DD  E++G +   A +   P Q++VG K V + +V ++  
Sbjct: 559 YDYARLIQDELKSQGVRVEIDDRNEKMGYKIREAQMQKIPYQLVVGDKEVENKEVNVRKY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNNRP 447
            +  +E +  +E I          + 
Sbjct: 619 GSQDQETLEKDEFIWNLVDEIRLKKQ 644


>gi|209521097|ref|ZP_03269827.1| prolyl-tRNA synthetase [Burkholderia sp. H160]
 gi|209498480|gb|EDZ98605.1| prolyl-tRNA synthetase [Burkholderia sp. H160]
          Length = 578

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 135/277 (48%), Positives = 178/277 (64%), Gaps = 5/277 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIISHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G IE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGGIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQADFVMGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR REF+MKD+YSFD   EG + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDSYSFDKDAEGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y+RIF RLGL+   + A++G IGG  SHEF V+AD GE  +       DF    E  D  
Sbjct: 181 YVRIFTRLGLEFRAVAADNGSIGGSGSHEFHVIADIGEDAIAYCPT-SDFAANVEAADAL 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                  +    +++   P  A  +   E L   L  
Sbjct: 240 PLIAQRAAPAEDMKKTATPGKAKCEAVAELLNIPLER 276



 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 72/192 (37%), Positives = 105/192 (54%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M+AT     GK   +
Sbjct: 382 PEPVVADIRNVKKGDPSPDGKGVLDICRGIEVGHVFQLGTKYSEAMNATCLDETGKPRPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R++ A IE + D KGIIWP+S+APF++ L  +        R+  +K+YA 
Sbjct: 442 EMGCYGIGITRILGAAIEQNFDEKGIIWPESIAPFEVVLCPMGYDRSDAVREQADKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       + +
Sbjct: 502 LVAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGDRGLKDGKIEYQGRRDTEATLLPV 561

Query: 432 EEVINYASHRFS 443
           E+       +  
Sbjct: 562 EDAAQTVIDKVR 573


>gi|33152900|ref|NP_874253.1| prolyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
 gi|81836009|sp|Q7VKI5|SYP_HAEDU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33149125|gb|AAP96642.1| prolyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
          Length = 571

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 126/250 (50%), Positives = 161/250 (64%), Gaps = 1/250 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVISHQLMLRAGMIRPTAAGLYNWLPTGVKILKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ES R++ YG E+LR ADR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEILMPVVQPAELWQESSRWEQYGPELLRFADRGKRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  TPE  + +Y  M+  
Sbjct: 121 ELSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTTPESLQQTYEVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    ++A++G IGG  SHEF VLA +GE  +       DF    E  +  
Sbjct: 181 YHRIFTRLGLDFRTVQADTGSIGGSASHEFQVLASSGEDDIVF-STESDFAANIELAEAV 239

Query: 241 DIISLNSIVE 250
            +       E
Sbjct: 240 AMGESKPATE 249



 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 68/187 (36%), Positives = 104/187 (55%), Gaps = 4/187 (2%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N  + D  P+ +   +  RGIEVGHIF  G KYS  M+AT +G DGK   + MG YG
Sbjct: 384 DLRNVVVGDPSPDGRGILLIKRGIEVGHIFQLGQKYSAAMNATVQGEDGKPLVMTMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVG 376
           IG  RVVAA IE  HD +  I   D +APF ++++ +        +   E++Y  L   G
Sbjct: 444 IGVTRVVAAAIEQHHDERGIIWPTDEIAPFTVAIVPMNMFKSASVQAFAEQLYTDLMAQG 503

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD  E+ G  FA  +L+G P  +++G K + + +VE K+R TG +  ++ ++++ 
Sbjct: 504 VDVILDDRKERPGVMFADMELIGVPHMIVIGEKNLENGEVEYKNRRTGEKTMIAKDQLLA 563

Query: 437 YASHRFS 443
           Y +    
Sbjct: 564 YLAQNVR 570


>gi|198275235|ref|ZP_03207766.1| hypothetical protein BACPLE_01394 [Bacteroides plebeius DSM 17135]
 gi|198271818|gb|EDY96088.1| hypothetical protein BACPLE_01394 [Bacteroides plebeius DSM 17135]
          Length = 646

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 152/445 (34%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVMLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRIRLQDFLRRIQARY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L+V SG Y  YGK+  +        +     P +      I+++  
Sbjct: 289 DYQEVMCPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYRDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +GL++   +                  D    + +   D           +  +
Sbjct: 408 SIVFTSMGLENFEAQISLR--------------DKENREKYIGSDENWEKAEQAIVEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLKAKVEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G+D + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  +K+   L K       DD  E+IG +    ++   P  +IVG K   + +V ++
Sbjct: 557 KFNDYADKVRMELKKYDVRALVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVAVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M +EE     +    N
Sbjct: 617 KQGEGDKGTMKIEEFAKNIAEEVHN 641


>gi|89891844|ref|ZP_01203345.1| threonyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
 gi|89515749|gb|EAS18550.1| threonyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
          Length = 648

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 153/436 (35%), Gaps = 36/436 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T    +  +G+  WLP G    + +   +++ Q + G   +  P
Sbjct: 238 AKKRDHRKLGKELQLFT-FSQRVGQGLPLWLPKGAALRERLEDFLKKAQKKAGYEMVVSP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            + S +L+V SG Y+ YG +  +      +D+  +  P +     +I++S   SYR+LP 
Sbjct: 297 HIGSKELYVTSGHYEKYGADSFQPIKTPSDDEEFLLKPMNCPHHCEIYKSSQWSYRDLPK 356

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +    +R E      G+ R R F   DA+ F +  +  K  +  +    L +F  LG
Sbjct: 357 RFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCMPEQLDKE-FKAVIDLVLYVFGSLG 415

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            ++   +               +       +        +    +  +   D      I 
Sbjct: 416 FENFTAQVS-------------IRDPKKPEKYIGDTKNWEIAENAIISAAKDKGLDYVIE 462

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E   A Y    D     + D+L  + ++    ++                  +KGAD + 
Sbjct: 463 EGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERFDLWYKGADNES 511

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H    +     G+M    A++     G   +W        +SL       +   +  +++
Sbjct: 512 HRPVMIHRAPFGSMERFIAILLEHTGGNFPLWLMPEQCTILSL------SEKYENYAKQV 565

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L         D+  E +G +   A++   P  +IVG +   D  + ++         
Sbjct: 566 ANSLENNEIRTTIDNRAETMGKKIREAEMNKLPYMLIVGEQEEKDGTISVRKHGGDDLGS 625

Query: 429 MSLEEVINYASHRFSN 444
           MS+E          ++
Sbjct: 626 MSVETFSQLIKDEIAS 641


>gi|222151594|ref|YP_002560750.1| threonyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
 gi|222120719|dbj|BAH18054.1| threonyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
          Length = 642

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 167/447 (37%), Gaps = 32/447 (7%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L IL+E   RD      +L L T        G+  WLP G      +   I ++
Sbjct: 226 KALKEHLKILEERKERDHRKIGKELELFTT-SQLVGAGLPLWLPNGATIRRELERYIVDK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           +   G   +  P + S DL+  SG +D Y ++M    +  ++A++  P +      ++++
Sbjct: 285 EVALGYDHVYTPIMGSVDLYKTSGHWDHYQEDMFPPMEMENEALVLRPMNCPHHMMVYKN 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SYR LP    ++ +  R E       ++    +  +     + P+  K  + ++   
Sbjct: 345 KPHSYRELPIRIAELGMMHRYEASGAVSGLQRVRGMTLNDAHIFVRPDQIKEEFIRVVQL 404

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDF 239
            + ++     K    R                  D+ +T+ +   D   +          
Sbjct: 405 VIDVYKDFKFKEYKFRLS--------------YRDSEDTEKYFQDDEMWERAQLMLKEAV 450

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D++           A Y    DV   ++  +L + + +S   ++    F    ++     
Sbjct: 451 DEMGLDYEEAPGEAAFYGPKLDV---QVKTALGKEETLSTVQLD----FLLPERFD---- 499

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             + G+DG+ H   +     G +  +   +    +     +P  +AP ++ +I +   ++
Sbjct: 500 LEYIGSDGEKHRPVVIHR--GVISTMERFVAFLTEEYKGAYPLWLAPNQLEIIPV--SNE 555

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V  D   K+Y  L   G     DD  E++G +   A +   P QV+VG K + +++V ++
Sbjct: 556 VHYDYARKLYDELKSQGVRCHIDDREEKMGYKIREAQMHKVPYQVVVGDKEIENNEVNVR 615

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
                  + +  ++ I          +
Sbjct: 616 QYGKKESKTIDRDDFIWSIVDEIRLKK 642


>gi|167042805|gb|ABZ07523.1| putative tRNA synthetase class II core domain (G, H, P, S and T)
           [uncultured marine microorganism HF4000_ANIW137I15]
          Length = 627

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 150/444 (33%), Gaps = 37/444 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD  +   +L L      Q   G+  WLP G      +     +E  R G 
Sbjct: 217 LAHLEEARRRDHRVLGKELGLFLIH-EQAGSGLVYWLPHGAVLRKVIERFWEDEHVRRGY 275

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             + +P L  + L+  SG YD Y + M  L + + +  +  P +      I+++  +SYR
Sbjct: 276 ELVVIPHLVHSRLFRTSGHYDFYKENMFTL-EVDGEEYVAKPMNCPGHILIYQNERRSYR 334

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP  + ++   +R+E      G++R R F   DA+ F    +        +    L + 
Sbjct: 335 DLPIRYAEMGTVYRNERSGVLHGMLRVRGFTQDDAHIFCTPEQLPGE-ILGVLDMTLFML 393

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G +   +                V       +   S D       S     D+    
Sbjct: 394 ATFGFERFEIELS-------------VRDPAHPEKYAGSDDEWKAAEASLVQALDERSLP 440

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E     Y    DV   K+ D+L    + S    +    F    ++       + GA
Sbjct: 441 YRRCEGEAVFYGPKIDV---KIVDALGRGWQASTIQFD----FNLPRRFD----LKYVGA 489

Query: 306 DGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           DG  H   M    +     R V A+IE +     +                    +   D
Sbjct: 490 DGDFHTPYMVHRALLGSLERFVGALIEHTAGAFPLWLSPVQVKVLPIT-------ERNHD 542

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A L + G  V  DD  E++G +     L   P  +++G +     +V ++ R  
Sbjct: 543 HARRVAASLKESGLRVDVDDRNEKLGYKIRQGRLERTPYLLVIGDREQESQQVAVRDRTE 602

Query: 424 GIREDMSLEEVINYASHRFSNNRP 447
           G    M L+  ++      +   P
Sbjct: 603 GNLGAMGLDAFLDRVQPEMAPRTP 626


>gi|159028099|emb|CAO87176.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 618

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 152/443 (34%), Gaps = 38/443 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            Y     +   RD      KL L +  I +    G+  W P G      +    R+    
Sbjct: 209 NYLQQKEEAQRRDHRKLGQKLKLFS--IQEDAGGGLVFWHPRGATMRYLIEDYWRQAHLE 266

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L + DLW  SG +D Y   M    +   ++    P +       +++ + 
Sbjct: 267 AGYQFLYTPHLANLDLWKTSGHWDFYRDNMFEAIELEQQSYQIKPMNCPFHVLTYQNDLH 326

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR  P  + ++   +R E      G+MR R F   DA+ F L  + +      +     
Sbjct: 327 SYREFPLRWAELGTVYRYERSGVLHGLMRVRGFTQDDAHIFCLPEQIAAE-ILGVLNLTE 385

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +I    G  +  +   + P                      S    +    +     +  
Sbjct: 386 KILSDFGFTNYQINLSTRPSKS-----------------VGSDSVWELATAALIEALNAK 428

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  +   A Y    D+   K+ D++    + S   ++    F    ++ +   A  
Sbjct: 429 KWDYIEDQGGGAFYGPKIDI---KIQDAIGRMWQCSTIQVD----FNLPERFDMQYVAR- 480

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                ++  + +     G++     ++    +     +P  +AP ++ L+ +       +
Sbjct: 481 --DGSRERPIMIHRAIFGSLERFFGILI---ENYAGDFPLWLAPIQVRLLPV---SDEQQ 532

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++  +L + G  V  D  GE++G Q    +L   P+  ++G + VS   + I+ R 
Sbjct: 533 HYALEVAVQLKQAGYRVEIDKSGERLGKQIRTGELEKIPVLAVIGKREVSSKTLSIRTRQ 592

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G    M+L +++        + 
Sbjct: 593 GGDLGSMTLADLLEKMQTAILSK 615


>gi|52628042|gb|AAU26783.1| prolyl-tRNA synthase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 589

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 134/398 (33%), Positives = 205/398 (51%), Gaps = 21/398 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL   +E P DAEIASH+LMLR+GMI +   G+Y+W+PLG + L  V  I+REE
Sbjct: 21  MRASQWFLVTQKETPNDAEIASHQLMLRSGMIRKLGSGLYTWMPLGLRVLRKVENIVREE 80

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+T A+E+ +P++Q A+LW E+GR++++G ++L + D N +   +GPTHEEV+TDI R+
Sbjct: 81  MNKTHAMELLMPSVQPAELWQETGRWETFGGQLLTMKDSNQREYCFGPTHEEVITDIMRN 140

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+ E  + +Y  M+ +
Sbjct: 141 ELQSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHLSLESLQETYKDMYQA 200

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GLK   + A++G IGG  SHEF VLA++GE  +F S          + T   
Sbjct: 201 YCRIFDRMGLKYRAVEADTGAIGGSASHEFQVLAESGEDLIFYSDASDYAANIEQATSLK 260

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            + +     E  T       D  N+K  D +     +++       I        + +  
Sbjct: 261 PLKANQPCNETIT-----LVDTPNQKTIDEVASFLGIASNQTIKTLIVKGKEHPMVALVL 315

Query: 301 TFKGADGKDHYVQM-----------GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
                  +   ++                +  ++     I        +I          
Sbjct: 316 RGDDELNEVKAIKHPLVHAPLSFIDEELILKTLKTPLGSIGPIQLNIPVIVDHHALAMPS 375

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
            +      D+   +A  +          D  +D    +
Sbjct: 376 FVCGANQADKHFINAAWE-----RDAKYDDAYDLRNVK 408



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 71/197 (36%), Positives = 109/197 (55%), Gaps = 3/197 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A Y    D+ N K  D  P+ K      RGIEVGH+F  G KY+  M+A+     G+
Sbjct: 393 ERDAKYDDAYDLRNVKEGDPSPDGKGTLHCCRGIEVGHVFQLGDKYAKAMNASVINEQGQ 452

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              + MG YG+G  RVVAA IE  HD  GIIWP ++APF++++I +  A  Q  ++  E 
Sbjct: 453 LQTMIMGCYGLGITRVVAAAIEQHHDEHGIIWPQALAPFQVNIIPLNGARSQAVKEQAES 512

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y +L   G DV  DD  E+ G  FA  DL+G P +++V  + +    VE K R++   +
Sbjct: 513 LYQQLKSHGIDVLLDDRNERAGVLFADNDLIGIPHRLVVSERNLEQGCVEYKARISSETQ 572

Query: 428 DMSLEEVINYASHRFSN 444
            ++L++V+N+     + 
Sbjct: 573 LINLDKVVNFIIELINK 589


>gi|110638045|ref|YP_678253.1| threonyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|123354610|sp|Q11UK3|SYT_CYTH3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110280726|gb|ABG58912.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 645

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 162/444 (36%), Gaps = 39/444 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L IL+E   RD      +L L      +   G+  WLP G    + +   +++ Q R G
Sbjct: 231 YLTILEEAKKRDHRKLGKELELFA-FSEKVGMGLPLWLPKGALLRERLENFLKKAQVRAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +  P + +  L+V SG +D YGK+  +        +  +  P +     +I+++  +
Sbjct: 290 YQPVVTPHIGNKQLYVTSGHFDKYGKDSFQPIFTPHEGEQFLLKPMNCPHHCEIYKTKPR 349

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + K+    L
Sbjct: 350 SYKDLPIRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCR-PDQVKEEFLKVIDLVL 408

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  LG      +                  D      +  +D           +    
Sbjct: 409 YVFKVLGFNDYTAQISLR--------------DPENKDKYIGEDEQWQKAEQAIIEASAE 454

Query: 243 ISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             L+++ E    A Y    D     + D+L    ++    ++         ++       
Sbjct: 455 KGLSTVTELGEAAFYGPKLDFM---VKDALGRKWQLGTIQVDY----QLPNRF----ELE 503

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G+D + H    +     G++    AV+     G   +W           I I    + 
Sbjct: 504 YTGSDNQKHRPVMLHRAPFGSLERFIAVLIEHVAGNFPLW------LSPDQIAILPISEK 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  + +Y RL       F D+  E+IG +    ++   P  +++G K V++ K+ I+ 
Sbjct: 558 FNDYAQDVYDRLLVKDIRGFIDNRDEKIGKKIRDTEVKKVPFMLVIGEKEVNEGKIAIRK 617

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
                   M +E+ I Y     + 
Sbjct: 618 HGGEDLGSMLVEDFIQYFESEIAK 641


>gi|255994452|ref|ZP_05427587.1| threonine--tRNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993165|gb|EEU03254.1| threonine--tRNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 581

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 85/445 (19%), Positives = 149/445 (33%), Gaps = 43/445 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      ++ L   M  +   G   +LP G      +    R+E  + 
Sbjct: 176 EYIDRIEEAKKRDHRKIGKEMDLFALM--EEGPGFPFFLPNGMILRTELENYWRQEHRKR 233

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + S +LW  SG YD Y + M      +D      P +       ++  + S
Sbjct: 234 GYDEIKTPLILSEELWHTSGHYDHYKENM-YFTSIDDAEYAIKPMNCPGAMLTYKRKLYS 292

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+ P    ++    R EL     G+MR R F   DA+ F +TP+  K    ++      
Sbjct: 293 YRDFPIRLAELGQVHRHELHGALHGLMRVRTFTQDDAHIF-MTPDIVKDEIKRVVSFIDD 351

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +++  G K       + P     + E                   +  I S      ++ 
Sbjct: 352 VYNLFGFKYHI-ELSTRPEDSMGTDE-----------------EWNHAIDSLEAAIKEMG 393

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D H E   DSL    +     ++    F    K+      T+ 
Sbjct: 394 KDYVINEGDGAFYGPKLDFHLE---DSLGRTWQCGTIQLD----FQMPQKFD----LTYV 442

Query: 304 GADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G+DG+ H   +    I     R +  +IE       +                    +  
Sbjct: 443 GSDGEKHRPIIIHRVIFGSIERFIGILIEHFAGKFPLWLAPEQVRLLTVT-------EKF 495

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               EK+   L+K G  V  D   E+IG +             ++G +      + ++  
Sbjct: 496 VPYAEKVSKELAKHGIRVKVDARNEKIGYKLRQGRNERVSYLAVIGEREAEADTLSVRSS 555

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
             G    +S+++ I+      +  +
Sbjct: 556 KEGDLGSLSIDKFIDALCDEIATKK 580


>gi|302879510|ref|YP_003848074.1| prolyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
 gi|302582299|gb|ADL56310.1| prolyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
          Length = 569

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 131/301 (43%), Positives = 183/301 (60%), Gaps = 4/301 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P +AE+ SH LM+R G I + + G+Y+W+PLG +AL  V AI+REE
Sbjct: 1   MRVSQFFISTLKEAPSEAELPSHILMMRAGYIRKLASGLYTWMPLGLRALRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GAIE+ +P +Q A+LW E+GR++ +G +ML++ DR++    +GPTHEEV+TDI R 
Sbjct: 61  MNNSGAIELLMPAVQPAELWDETGRWEVFGPQMLKIKDRHNNQFCFGPTHEEVITDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF    +  + +Y  M+ +
Sbjct: 121 EIRSYRQLPVNFYQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHADFDSLEQTYAVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS---KDFMDFPIPSENT 237
           Y RIF RLGLK   + A++G IGG  SHEF VLAD+GE  +          +  +    T
Sbjct: 181 YSRIFTRLGLKFRAVAADTGAIGGSGSHEFHVLADSGEDALAYCPNSSYAANVELAEAVT 240

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN-KRVSARGIEVGHIFYFGTKYSL 296
                 +    +     P   T +   E L   L    K ++    +  HI      +SL
Sbjct: 241 PDSPRAAPAEALRNVDTPKQTTCEQVAELLGIPLQRTVKLLALVANDQLHIILLRGDHSL 300

Query: 297 P 297
            
Sbjct: 301 N 301



 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/187 (35%), Positives = 103/187 (55%), Gaps = 3/187 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGHIF   TKY+  M ATF  A GK   ++MG 
Sbjct: 383 VADIRNVVTGDISPDGKGTLEICRGIEVGHIFQLRTKYAADMKATFLDAQGKAQTLEMGC 442

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKV 375
           YGIG  R+VAA IE +HD +GI  P ++APF+++L+ I     +  R A E++YA L   
Sbjct: 443 YGIGVSRIVAAAIEQNHDPRGITLPAAIAPFQVALVPIGMNKSEAVRAAAEQLYAELKAS 502

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +V +DD  E+ G  FA  +L+G P +++VG + + +  +E + R       + L+  +
Sbjct: 503 DIEVLFDDRDERPGVMFADMELIGIPHRIVVGDRGLKEGLIEYQGRRDDAALSIPLQNAL 562

Query: 436 NYASHRF 442
            +   + 
Sbjct: 563 EFIQSKL 569


>gi|163854968|ref|YP_001629266.1| prolyl-tRNA synthetase [Bordetella petrii DSM 12804]
 gi|226699121|sp|A9I4I5|SYP_BORPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|163258696|emb|CAP40995.1| proS [Bordetella petrii]
          Length = 576

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 160/224 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P +AE+ASH+LM R GMI + + GIY+++PLG K +  + AI+R E
Sbjct: 1   MRASTYHLNTLKEAPAEAEVASHRLMTRAGMIRKLAGGIYTYMPLGLKVIRKIEAIVRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE+ +P +Q A+LW ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MDAAGAIELLMPVVQPAELWQESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G++ SY+KM+ +
Sbjct: 121 EIHSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGAQQSYDKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   + A++G IGG  SHEF V+ADTGE  +  +
Sbjct: 181 YMRIFERLGLQFRAVAADTGSIGGSRSHEFQVIADTGEDLLVYN 224



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 99/189 (52%), Gaps = 3/189 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+   +    RGIEVGH+F+ GTKYS  + ATF    GK   +QMG 
Sbjct: 387 VADLRNVVEGDPAPDGAGRLAIQRGIEVGHVFFLGTKYSEALKATFLDETGKPALLQMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+  A IE +HD +GIIWP ++APF++ +  +    ++  R+   K+Y  L   
Sbjct: 447 YGIGITRIAGAAIEQNHDERGIIWPRAIAPFEVVICPVGWGKNETVRNESVKLYDALRAR 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD   + G  FA  +L+G PL+V VG + ++D  VE++ R       +     +
Sbjct: 507 GVDVILDDRDARPGVMFAEWELIGVPLRVTVGERGLNDGVVELQARRESTAAKIPAGSAL 566

Query: 436 NYASHRFSN 444
                +   
Sbjct: 567 EQVLAKLET 575


>gi|290473678|ref|YP_003466550.1| proline tRNA synthetase [Xenorhabdus bovienii SS-2004]
 gi|289172983|emb|CBJ79754.1| proline tRNA synthetase [Xenorhabdus bovienii SS-2004]
          Length = 573

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 128/278 (46%), Positives = 175/278 (62%), Gaps = 18/278 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SHKLMLR GM  + + G+Y+W+P G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVVSHKLMLRAGMTRKLASGLYNWMPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFEDRGARPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+KM+ +
Sbjct: 121 EVTSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC---------------SK 225
           Y +IF R+GL    + A++G IGG  SHEF VLAD+GE  +                   
Sbjct: 181 YSKIFTRIGLDFRAVLADTGSIGGSASHEFQVLADSGEDDIAFSTESNYAANIELAEAVM 240

Query: 226 DFMDFPIPSENTDF---DDIISLNSIVEQWTAPYAATS 260
              +  +PSE+       +  ++  +VEQ+  P   T 
Sbjct: 241 PSHERAVPSEDMHLVETPNAKTIAELVEQFNLPIEKTV 278



 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/208 (37%), Positives = 119/208 (57%), Gaps = 3/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D+ P+ +   +  RGIEVGHIF  GTKYS  +
Sbjct: 366 DDKHYFGINWERDLPLPEIADIRNVLEGDASPDGQGTLLIKRGIEVGHIFQLGTKYSDAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +  DG +  V MG YGIG  R+VAA IE +HD +GIIWPD++APF+++L+ +  H 
Sbjct: 426 KATVQNEDGHNQVVSMGCYGIGVTRIVAAAIEQNHDDRGIIWPDAIAPFQVALLPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV +DD  E+ G  FA  +L+G P  +++G + + + +VE
Sbjct: 486 SYRVKEVAEKLYADLRANGIDVIFDDRKERPGVMFADMELIGVPHTLVIGDRNLDNGEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            K+R  G ++ + LE +I Y   +   +
Sbjct: 546 YKYRRNGDKQMLKLEGIIEYLKEQIKQH 573


>gi|187925415|ref|YP_001897057.1| prolyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
 gi|226699128|sp|B2SYU8|SYP_BURPP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|187716609|gb|ACD17833.1| prolyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
          Length = 578

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 135/288 (46%), Positives = 182/288 (63%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G IE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+
Sbjct: 61  MNRAGGIELLMPAVQPAELWQESGRWEKYGPELLRFKDRRQSDFVIGPTHEEVVTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   +G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDMDGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-- 238
           Y+RIF RLGL    + A++G IGG  SHEF V+A+TGE  +       DF    E  +  
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIAETGEDAIAYCPT-SDFAANVEAAEAL 239

Query: 239 --FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
             + +  +    +++   P  A  +   E L   L    +      E 
Sbjct: 240 PLYAERAAPTEEMKKTPTPGKAKCEAVAELLNIPLERTIKSIILATEN 287



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 105/192 (54%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M AT     GK   +
Sbjct: 382 PEPVVADIRNVKKGDPSPDGKGVLDICRGIEVGHVFQLGTKYSEAMGATCLDETGKPRPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R++ A IE + D KGIIWP+S+APF++ L  +     +  R   +K+YA 
Sbjct: 442 EMGCYGIGVTRILGAAIEQNFDDKGIIWPESIAPFEVVLCPMGYDRSEAVRAEADKLYAA 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R       + +
Sbjct: 502 LVEAGIDVILDDRGERPGVMFADWELIGVPHRLVIGDRGLKEGKLEYQGRRDAEATLLPV 561

Query: 432 EEVINYASHRFS 443
           E+       +  
Sbjct: 562 EDAAQTVIGKVR 573


>gi|218886086|ref|YP_002435407.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226701453|sp|B8DPN2|SYT_DESVM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|218757040|gb|ACL07939.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 644

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 82/435 (18%), Positives = 151/435 (34%), Gaps = 41/435 (9%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  ++E  R D      +L L        + G+  W P G      +   +R+E  + G 
Sbjct: 231 LHQIEEAKRRDHRKLGQQLDLFAFH-EDVAPGMVYWHPKGMLLRTILEDFLRKEHLKRGY 289

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P L   ++W +SG YD+Y + M      +D A    P +      I++SH++SYR
Sbjct: 290 ELVQGPQLLRREVWEKSGHYDNYRENM-YFTVIDDNAYGVKPMNCVSHMLIYKSHLRSYR 348

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP   +++ +  R E      G++R R+F   DA+      +                 
Sbjct: 349 DLPRRMFELGVVHRHEKSGVLHGLLRVRQFTQDDAHILCRPDQLEAEII----------- 397

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                    + A    + G    ++ ++  T   +   S +  D    +           
Sbjct: 398 --------GVIALVRDLMGLFGFDYRIVISTRPEKSIGSDEDWDRATNALIGAVATAGLS 449

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           ++I E   A Y    D+   K+ D++    ++S   ++    F    ++       + G 
Sbjct: 450 HTINEGDGAFYGPKIDI---KVTDAIGREWQLSTIQVD----FTLPDRFD----LVYIGQ 498

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H    +    +G++     V+     G    W             +        D 
Sbjct: 499 DGERHRPVMVHRAILGSLERFIGVLTEHFAGAFPTW------IVPVQARLLTVTDAQNDF 552

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
                 +L   G  V  D   E++G +   A L   P  ++VG K V    V ++ R   
Sbjct: 553 AMGARDQLVAAGLRVEADTRNEKLGYKVREAQLEKIPYILVVGDKEVEAGGVNVRLRNGE 612

Query: 425 IREDMSLEEVINYAS 439
                +L EV     
Sbjct: 613 NLGLKTLAEVAEMIR 627


>gi|254374591|ref|ZP_04990072.1| threonyl-tRNA synthetase [Francisella novicida GA99-3548]
 gi|151572310|gb|EDN37964.1| threonyl-tRNA synthetase [Francisella novicida GA99-3548]
          Length = 634

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 143/442 (32%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       L L      + S GI  W   G +    V   +R   N+ G
Sbjct: 230 YLNMLEEAEKRDHRKIGKVLDLF--HFQEDSPGIAFWHDNGVRIWRQVEDYMRASNNKYG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG    Y + M       ++     P +      ++ + + SY
Sbjct: 288 CSEIRTPLIADFSLWQKSGHASKYAENMF-ATKSENRDFAIRPMNCPTCVQVYNTKLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R+E      G++R R F   D + F    +  +     +   +   
Sbjct: 347 RDLPIRIAEFGIVHRNEPSGSLHGLLRVRSFTQDDGHIFCTPEQVEEEVILMVQQCFEV- 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++    P       E                   D          D    
Sbjct: 406 YKDFGFNDFAVKIALRPENRIGDDE-----------------TWDKSEQMLKNALDANNV 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              ++    A Y    + H   L D++  + +     ++       G        AT+  
Sbjct: 449 SYELLPGEGAFYGPKIEFH---LKDAIGRSWQCGTIQLDFSMPQRLG--------ATYID 497

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G+    V +    +G++     ++   + G   +W   V    + + N         D
Sbjct: 498 KNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLWLAPVQVAVMGISN------NQDD 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C++++  L K G     D   E+IG +     LL  P  VI+G        + I+    
Sbjct: 552 YCKEVFTMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIRKHSG 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS+ +   +   +    
Sbjct: 612 EDLGQMSVYDFCAFLDKQIQAK 633


>gi|255320540|ref|ZP_05361720.1| prolyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262379097|ref|ZP_06072253.1| prolyl-tRNA synthetase [Acinetobacter radioresistens SH164]
 gi|255302390|gb|EET81627.1| prolyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262298554|gb|EEY86467.1| prolyl-tRNA synthetase [Acinetobacter radioresistens SH164]
          Length = 571

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L+ V AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGVRVLNKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E  +P  Q A LW ESGRY  YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNRAGALETFMPVTQPASLWEESGRYVQYGPELLRFNDRHTNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+ +
Sbjct: 121 ELKSYKQLPINFYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHVDQASLQETYDVMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +       D+    E
Sbjct: 181 YCRIFSRLGLDFRPVQADTGSIGGSGSHEFHVLASSGEDDIAF-STESDYAANIE 234



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/193 (34%), Positives = 102/193 (52%), Gaps = 3/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A +    D+ N    D  P+ K      RGIEVGHIF  G KYS  +     G DGK
Sbjct: 379 ERDASFTEVYDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEALGCKVLGEDGK 438

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              V MG YGIG  RV+A+ IE ++D KGIIWP ++APF+++++ + A       +A E 
Sbjct: 439 PLTVTMGCYGIGVTRVIASAIEQNYDEKGIIWPAAIAPFEVAIVPMNAHKSPRTLEAAEA 498

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y  L   G DV  DD  E+ G +F+  +L G P ++++G K +     E K R      
Sbjct: 499 LYIELQAQGFDVLLDDRNERPGVKFSDLELTGIPHRIVIGEKGLDAGTFEYKGRTDIESV 558

Query: 428 DMSLEEVINYASH 440
           +++ +E++   + 
Sbjct: 559 NINKDELLAKLAK 571


>gi|255531804|ref|YP_003092176.1| threonyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
 gi|255344788|gb|ACU04114.1| threonyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
          Length = 641

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 156/445 (35%), Gaps = 38/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   I +   RD      +L L      +   G+  WLP G    + +   +   Q 
Sbjct: 228 LTEYLHMIEEAKKRDHRKLGKELELFA-FSEKVGMGLPLWLPKGAALRERLVQFLTRAQA 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G  ++  P +   +L++ SG Y+ YGK+  +     +  +     P +     +I+++
Sbjct: 287 KAGYEQVVTPHIGHKNLYITSGHYEKYGKDAFQPIKTPQEGEEFFLKPMNCPHHCEIYKT 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + K+  
Sbjct: 347 KPRSYKDLPLRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFCR-PDQVKEEFKKVID 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG      +                  D      +   D       +   + 
Sbjct: 406 LVLYVFKSLGFDDYTAQVSLR--------------DPENKAKYIGSDENWRLAETAIIEA 451

Query: 240 DDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            D   L ++VE    A Y    D     + D+L    ++    ++               
Sbjct: 452 ADEKGLPTVVEYGEAAFYGPKLDFM---VKDALGRKWQLGTIQVDYNLP--------ERF 500

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + G+D + H    +     G++    AV+     G   +W             I   
Sbjct: 501 ELEYTGSDNQKHRPVMIHRAPFGSLERFIAVLIEHCAGNFPLW------LSPEQFIILPI 554

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D  +K+   L+        D   E+IG +   A++   P  +I+G K +++ K  
Sbjct: 555 SEKYEDYAKKVSDELNNSDIRGLIDFRDEKIGRKIRDAEVKKIPYMLIIGEKEMAEGKAS 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           ++    G   +M+L+E         
Sbjct: 615 VRKHGEGDLGEMTLQEFSELLIKEI 639


>gi|332286931|ref|YP_004418842.1| prolyl-tRNA synthetase [Pusillimonas sp. T7-7]
 gi|330430884|gb|AEC22218.1| prolyl-tRNA synthetase [Pusillimonas sp. T7-7]
          Length = 577

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 120/276 (43%), Positives = 174/276 (63%), Gaps = 3/276 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKY +  L+E P +AE+ SH+LM R GMI + + GIY+++PLG K L  +  I+R+E
Sbjct: 1   MHASKYHINTLKEAPAEAEVKSHQLMTRAGMIRKAAGGIYTYMPLGLKVLRKIENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GAIE+ +P +Q A+LWVESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MDQAGAIELLMPVVQPAELWVESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I S+R LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD     ++ SY+ M+ +
Sbjct: 121 EIHSWRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEASAQSSYDTMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS---KDFMDFPIPSENT 237
           Y+RIF RLGL    + A++G IGG  SHEF V+ADTGE  +  +   +   +  +     
Sbjct: 181 YMRIFQRLGLTFRAVAADTGSIGGSRSHEFQVIADTGEDLIVYNPNTQYAANIELAEAAC 240

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                 +    + + + P A   ++  ++L   L +
Sbjct: 241 LIPQRGAATETLNKTSTPDAPKCEIVAQQLGKPLSD 276



 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 109/192 (56%), Gaps = 2/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV-SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           P A  +D+ N    D  P+  ++   RGIEVGH+F+ G KYS  ++ATF   DGK   +Q
Sbjct: 385 PEATVADLRNVVAGDPDPQGGQLAIQRGIEVGHVFFLGDKYSKALNATFLETDGKPALLQ 444

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARL 372
           MG YGIG  R+ AA IE  HD KGIIWP S+APF++ +  +     +  R+  E++Y  L
Sbjct: 445 MGCYGIGISRIAAAAIEQCHDEKGIIWPKSIAPFELVICPMGWHKSETVRNTAEELYQSL 504

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G +V  DD   + G  FA  +L+G PL++ +G + + +  VEI+ R   I   +++ 
Sbjct: 505 KAQGVEVMLDDRDVRPGIMFADWELIGVPLRITIGDRGLKEGIVEIQARRQEITNKVAVA 564

Query: 433 EVINYASHRFSN 444
           + ++YA     +
Sbjct: 565 DALDYALELLQS 576


>gi|329849735|ref|ZP_08264581.1| threonyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
 gi|328841646|gb|EGF91216.1| threonyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
          Length = 640

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/435 (17%), Positives = 140/435 (32%), Gaps = 37/435 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD       + L    + +  +G+  W P G      + A +R   + +G
Sbjct: 230 YIQRIEEAEKRDHRKIGRAMDLF--HMQEEGRGMVFWHPKGWVLWRVLEAYMRRRLDASG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +     W +SG ++ Y   M        + +   P +      IF+  ++SY
Sbjct: 288 YVEVKTPQVLDRSFWEQSGHWEKYRANMFVCETVEGETLSLKPMNCPGHVQIFKVGLRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP    +     R E      G+MR R F   DA+ F    +  + +   + ++   I
Sbjct: 348 KELPIRMAEFGACHRYEPSGSLHGLMRVRGFTQDDAHIFCREDQIVEETAKFVRLT-KLI 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              LG+++  +   + P     S  F                  D               
Sbjct: 407 HADLGMETAYINLATRPEIRAGSDAF-----------------WDKAEGMLAEAAKQAGV 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A YA   D     + D++          ++              + A +  
Sbjct: 450 EPVIAEGDGAFYAPKLDFI---VKDAIGREWTCGTLQLDYVLP--------ERLDAEYVA 498

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG      M    I  +      I    +     +P  +AP ++ +  I          
Sbjct: 499 EDGSRQRPVMLHRAI--LGSFERFIGIMIENFAGKFPLWLAPVQVVVAPIT---SDANPY 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            EK+   L   G  V  D   E+I  +     +   P+  +VG K     +V ++   + 
Sbjct: 554 AEKVTQSLRAAGLRVEADLRNEKINYKVREHSVAKVPVIAVVGRKEAETGEVALRFLGSD 613

Query: 425 IREDMSLEEVINYAS 439
            +  +SL + +    
Sbjct: 614 GQTILSLADAVQRLQ 628


>gi|326800360|ref|YP_004318179.1| threonyl-tRNA synthetase [Sphingobacterium sp. 21]
 gi|326551124|gb|ADZ79509.1| threonyl-tRNA synthetase [Sphingobacterium sp. 21]
          Length = 641

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 154/449 (34%), Gaps = 41/449 (9%)

Query: 2   RRSKY--FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           + S+   +L +++E   RD      +L L      +   G+  WLP G      +   ++
Sbjct: 224 KASELADYLHMIEEAKKRDHRKLGKELELFA-FSERVGMGLPLWLPKGAALRQKLVDFLQ 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTD 116
             Q + G   +  P +   +L+V SG Y+ YG +  +     +  +  +  P +     +
Sbjct: 283 RAQMKAGYEPVVTPHIGHKNLYVTSGHYEKYGADSFQPIRTPQEGEEFLLKPMNCPHHCE 342

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+++  +SY++LP  F +    +R E      G+ R R F   DA+ F    +     + 
Sbjct: 343 IYKTKPRSYKDLPVRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFCRPDQVKDE-FK 401

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K+    L +F  LG      +                  D      +   +       + 
Sbjct: 402 KVIDLVLYVFKALGFDDYTAQISLR--------------DPENKGKYIGSEENWLLAEAA 447

Query: 236 NTDFDDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
             +  +   L ++ E    A Y    D     + D+L    ++    ++           
Sbjct: 448 IVEAAEEKGLKTVTELGEAAFYGPKLDFM---VKDALGRKWQLGTIQVDYNLP------- 497

Query: 295 SLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                  + G+D + H    +     G++    AV+     G+  +W             
Sbjct: 498 -ERFELEYTGSDNQKHRPVMIHRAPFGSLERFVAVLIEHCAGEFPLW------LTPEQFI 550

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I    +   +  +K+   L+        D   E++G +   A++   P  +IVG K V +
Sbjct: 551 ILPVSEKYEEYAKKLLESLNNTDIRGLIDLRDEKVGRKIRDAEVKKIPYMLIVGEKEVEN 610

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRF 442
             + ++    G    M++E          
Sbjct: 611 GTISVRKHGEGDLGSMTIEAFSKQLIEEI 639


>gi|313899489|ref|ZP_07832999.1| threonine--tRNA ligase [Clostridium sp. HGF2]
 gi|312955777|gb|EFR37435.1| threonine--tRNA ligase [Clostridium sp. HGF2]
          Length = 579

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 148/441 (33%), Gaps = 38/441 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD +    +L L   M+ + + G+  +LP G    + +     EE  +   
Sbjct: 174 LHLLEEAKKRDHKKLGRELGLF--MMSEFAPGMPFFLPNGMIIRNLLENFWYEEHTKENY 231

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P + S +LW  SG +++Y + M      +D+     P +      +F++ + SY+
Sbjct: 232 QFIKTPIMMSKELWEVSGHWENYKENMYTTM-VDDREFAIKPMNCPGSLLVFKNGLHSYK 290

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++    R E      G+ R R F   DA+ F    +       ++     R++
Sbjct: 291 DLPLRMGELGQVHRHEASGALNGLFRVRTFTQDDAHIFMRPDQIESE-VMQLIQFIDRVY 349

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL        + P                E +        +    +           
Sbjct: 350 SVFGLSYRI-ELSTRP----------------EKKYIGDLAIWEQSEKALADACVHAGKD 392

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             +     A Y    D H   + DSL    +     +++     F   Y     +     
Sbjct: 393 YKVNPGDGAFYGPKLDFH---IKDSLGREWQCGTIQLDMNLPERFDLTYVEKDGSKV--- 446

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                 V +     G++     ++     G   +W          +  +  H +      
Sbjct: 447 ----RPVMLHRVIFGSIERFIGILIEHFAGHFPVWLA-----PQQVSVVPVHHEKHLGYA 497

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            +++ +L  +G     D   E++G +   A L   P Q+++G   + +  V ++   +  
Sbjct: 498 NEVHEKLCALGFRSKLDARNEKLGYRIREAQLSKIPYQLVIGDGEIENRSVTLRRAQSRE 557

Query: 426 REDMSLEEVINYASHRFSNNR 446
              MSL++ I          +
Sbjct: 558 SITMSLDDFIAMMEKAVKEKK 578


>gi|242278211|ref|YP_002990340.1| prolyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
 gi|259511591|sp|C6BYX7|SYP_DESAD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|242121105|gb|ACS78801.1| prolyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
          Length = 580

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 127/238 (53%), Positives = 172/238 (72%), Gaps = 1/238 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y++P L+E+P +AE+ SHKL++R GMI + + GIY++LPLG K+++ V AI+REE
Sbjct: 1   MRLSRYYIPTLKEDPSEAEVVSHKLLMRAGMIRKLTSGIYNYLPLGLKSVNKVAAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q  DLW E+GR+D YGKE+LR+ DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGALEVLMPMVQPGDLWQETGRWDYYGKELLRVKDRHGRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G++ SY  MF +
Sbjct: 121 EVKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDKDEAGAEESYRGMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENT 237
           Y + F R+GL   P++A+SG IGGD SHEF VLADTGE  +  C  +   +    E  
Sbjct: 181 YKKAFSRIGLNFRPVQADSGAIGGDFSHEFHVLADTGEDTIAVCKDEKCGYAANLEKA 238



 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 119/225 (52%), Gaps = 9/225 (4%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            + ++    D++      +       +  +  +EQ+        D+      D  PE   
Sbjct: 349 ADHELLTETDWIAGANKGDTHIKHLSLGRDCKIEQFA-------DLRVITEADPCPECGA 401

Query: 277 VS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                +GIEVGH+F  G+KYS  M ATF   +GK   + MG YGIG  R+VA+ IE ++D
Sbjct: 402 AIEFTKGIEVGHVFKLGSKYSKSMEATFLDENGKTQPMVMGCYGIGVSRIVASAIEQNND 461

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             G I+P ++APF++ +I++   D+   +  E+ Y  L ++G D  +DD  E+ G +FA 
Sbjct: 462 ENGAIFPPTIAPFELCVISLGGKDEAVNEKAEEFYNELMEMGIDAAYDDRKERPGVKFAD 521

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ADL+G+P+Q+++G K + +  VE K+R TG + ++ LE       
Sbjct: 522 ADLIGYPMQLVIGGKGLKNGIVEAKNRKTGEKIELPLEGFTEAFK 566


>gi|226951685|ref|ZP_03822149.1| prolyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
 gi|294651367|ref|ZP_06728686.1| proline--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|226837601|gb|EEH69984.1| prolyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
 gi|292822769|gb|EFF81653.1| proline--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 571

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+YSWLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYSWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGR++ YG E+LR  DR++   + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGALEVFMPVTQPAALWEESGRFEQYGPELLRFKDRHNNDFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF    E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHANQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +       D+    E
Sbjct: 181 YSRIFSRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAF-STESDYAANVE 234



 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 100/189 (52%), Gaps = 3/189 (1%)

Query: 253 TAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A +    D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G DGK  
Sbjct: 381 DATFTEVYDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGEDGKPF 440

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIY 369
            V MG YGIG  RVVAA IE + D KGIIWP ++APF ++++ + A       +A E +Y
Sbjct: 441 TVTMGCYGIGVTRVVAAAIEQNFDDKGIIWPQAIAPFDVAIVPMNAHKSPRTVEAAEALY 500

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R      ++
Sbjct: 501 AELQAQGYDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDAEASNL 560

Query: 430 SLEEVINYA 438
           + EE+    
Sbjct: 561 NKEELFAKL 569


>gi|269836488|ref|YP_003318716.1| threonyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
 gi|269785751|gb|ACZ37894.1| threonyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
          Length = 596

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 155/443 (34%), Gaps = 41/443 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      +L L +        G+  W P G      +     EE    G
Sbjct: 183 YLHRLEEAQRRDHRRLGRELDLFSVN-EDIGAGLILWHPKGAMIRHLIERFETEEHLARG 241

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + S D++ +SG  ++Y + M    D         P +      I+ S ++SY
Sbjct: 242 YQLVYTPHIASGDIYRKSGHLETYQENMYSPMDIEGAPYYLKPMNCPGHIMIYNSQVRSY 301

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++   +R E      G++R R F   DA+ F   P+  +     +    L  
Sbjct: 302 RDLPIRLAELGTVYRYERSGTLHGMLRVRGFTQDDAHIFCR-PDQLEDEIKGVLDLALYF 360

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G                  +E+     T   +   S +  +    +      ++  
Sbjct: 361 ARVFG------------------YEYEAFLATRPEKSIGSDENWERATETLANALRNMGI 402

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D+   K  DSL          ++    F    ++     AT+ G
Sbjct: 403 PYEIDPGAGAFYGPKIDI---KFLDSLGREWTGPTIQVD----FNLPERFD----ATYVG 451

Query: 305 ADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H  V +    +G+M      +    +     +P  +AP +  +I I         
Sbjct: 452 EDGERHRVVMVHRTVLGSMERFVGGLI---EHYAGAFPVWLAPVQAEVIPIADRH---VP 505

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ ARL +    V  +D  +++ ++   A L   P  ++VG K      V ++ R  
Sbjct: 506 YAHEVAARLKEADLRVEVNDSNDRMQAKIRRAQLQRIPYMLVVGDKEAEAGTVAVRLRTN 565

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                M ++E I   +   ++ +
Sbjct: 566 ENLGAMPVDEFIA-LAKEMNDTK 587


>gi|251797797|ref|YP_003012528.1| prolyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247545423|gb|ACT02442.1| prolyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 571

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 123/272 (45%), Positives = 166/272 (61%), Gaps = 2/272 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  LP L+E P +AE  SH+LMLR G+I Q + GIY++LP G+  L  +  IIREE
Sbjct: 1   MRQSQLLLPTLREAPSEAEAVSHQLMLRAGLIRQLAAGIYTYLPAGRLVLRKLEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q ADLW +SGRY+ YG E++RL DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MDNAGCQEVFMPAMQPADLWRQSGRYEKYGPELVRLKDRHDREFALGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP T YQIQ KFRDE RPR+G++R REF+MKDAYSFD   EG   SY +M+ +
Sbjct: 121 EVNSYRQLPVTLYQIQTKFRDEKRPRYGLLRGREFMMKDAYSFDADWEGLNESYQRMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y RIF R GL   P+ A++G IGG+  +HEF+ LAD GE  +        +    E   +
Sbjct: 181 YHRIFSRCGLHFRPVEADAGTIGGEGGTHEFMALADIGEDTIAACDHCR-YAANLEKAGY 239

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  +  +    P        N +  D L
Sbjct: 240 RIPEGEINTGDSEAYPELEKIHTPNVRKIDEL 271



 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 74/210 (35%), Positives = 109/210 (51%), Gaps = 5/210 (2%)

Query: 239 FDDIISLNSIVEQWTAPYAA-TSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKY 294
            ++       V       AA   DV N  L D  P   E K    RGIEVG +F  GTKY
Sbjct: 363 ANETDYHWKHVRPGAHFVAARLRDVRNAVLGDGCPNCAEGKLRMFRGIEVGQVFKLGTKY 422

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           S  M A +  A G +  + MG YGIG  RV++AV+E  HD +GI WP  +AP+++ ++ +
Sbjct: 423 SEVMQANYLDATGSEKPIIMGCYGIGISRVMSAVVEQHHDEQGIRWPLELAPYQVHVVPV 482

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            A D    D   K+Y  L   G +V  DD  E+ G +F  +DL+G P++++VG +  +D 
Sbjct: 483 SAKDGQQMDVAGKLYRELMSAGFEVLLDDRDERPGVKFKDSDLIGIPVRIVVGRQ-AADG 541

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            VE+K+R  G     + EE +   +  F +
Sbjct: 542 VVELKYRNEGEVLQATTEEALGLVTGYFRS 571


>gi|219669716|ref|YP_002460151.1| prolyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
 gi|254782897|sp|B8FR28|SYP_DESHD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219539976|gb|ACL21715.1| prolyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 575

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 112/240 (46%), Positives = 157/240 (65%), Gaps = 2/240 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+   P L+E P +AE+ SH+L++R G+I + + GIY++LPLG + L  +  I+REE
Sbjct: 1   MRVSQILNPTLREVPAEAEVVSHQLLVRAGLIRKSAAGIYTYLPLGLRVLRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A+LW ESGR+D YG+E++RL DR+++    GPTHEE++TD+ R 
Sbjct: 61  MDAKGGQEVLLPIIQPAELWRESGRWDLYGQELMRLNDRHNREFCLGPTHEEIITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP   YQIQ K+RDE RPRFG+MR REF+MKD YSFD    G   SY KM+ +
Sbjct: 121 EIRSYKQLPLLLYQIQNKYRDERRPRFGLMRGREFIMKDLYSFDRDEAGLAESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y RIF R GL   P+ A+     G   +HEF+VLA++GE  V    D  D+    E  + 
Sbjct: 181 YTRIFTRCGLTFRPVEADAGAIGGTGGTHEFMVLAESGEAAVVYCPDC-DYAANVEKAEC 239



 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/186 (36%), Positives = 104/186 (55%), Gaps = 2/186 (1%)

Query: 261 DVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+      +  P+       ARGIEVG +F  GTKYS  ++A F   +G +H   MG YG
Sbjct: 385 DLRMVNAGEPCPQCGSPLKEARGIEVGQVFKLGTKYSKALNAVFLDENGAEHPCVMGCYG 444

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R +AA IE ++D  GIIWP  +AP+ + ++ +   D   R+  E +Y  L K+G +
Sbjct: 445 IGVSRTMAAAIEQNNDKDGIIWPIPIAPYHVIVVPVNMKDDQVRETGEALYQELLKLGVE 504

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              DD  E+ G +F  ADL+G+PL+V VGSK +++ +VE++ R TG  + + +EE+    
Sbjct: 505 AVLDDRDERPGVKFKDADLVGYPLRVTVGSKTLANGEVELRDRKTGEVQLVKVEELAGRI 564

Query: 439 SHRFSN 444
                 
Sbjct: 565 QGMIRE 570


>gi|326795786|ref|YP_004313606.1| prolyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
 gi|326546550|gb|ADZ91770.1| Prolyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
          Length = 577

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 129/382 (33%), Positives = 193/382 (50%), Gaps = 28/382 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y    L++ P DA + SH+LM+R GMI Q SKG+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRASNYLFSTLRDAPTDAVVTSHQLMVRAGMIRQISKGLYTWLPTGLRVLKKVENIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+E+ +P +Q A+LW ESGR+  YG E+LR+ DR+++    GPTHEEV+T++ R+
Sbjct: 61  MEKAGALEVMMPGVQPAELWEESGRWQKYGPELLRMKDRHNRDYCLGPTHEEVITELARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREF+MKDAYSF    +  + +Y+ M  +
Sbjct: 121 ELTSYKQLPINFFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHSNSDSLRQTYDVMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R+GL   P++A++G IGG  SHEF VLA +GE  +  S                
Sbjct: 181 YCNVFDRIGLDYRPVQADTGSIGGAYSHEFHVLAQSGEDDIAFSDSSEFAANVELAEAVC 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              S ++  ++ +  +        +K+ D L   K    + ++   +   G   S  + A
Sbjct: 241 SKKSPDTPTQEVSEEFTPDCKT-IQKVADYL---KLPVEKTVKTMLVKGQGPDESETIVA 296

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                          +     +  +  V+            DS+     S+         
Sbjct: 297 LVL--------RGDHNINEVKVEKIDGVLSPFEFATEQDIVDSIGCTPGSIGPQG----- 343

Query: 361 CRDACEKIYARLSKVGCDVFWD 382
                      L + G  V  D
Sbjct: 344 -----------LKEKGIRVIVD 354



 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 73/191 (38%), Positives = 110/191 (57%), Gaps = 3/191 (1%)

Query: 258 ATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T D+ N    D  P+ +   V  RGIEVGHIF  G +YS  + A+    +GK   + MG
Sbjct: 387 ETKDIRNVVEGDPSPDGEGHIVIKRGIEVGHIFQLGQQYSEALRASVLDENGKAQTMWMG 446

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSK 374
            YGIG  R+VAA IE + D KGI+WP+S+ PF +++I +     +  RD C+ +Y  L +
Sbjct: 447 CYGIGVSRIVAAAIEQNFDDKGILWPESITPFSVAIIAMNYDKSEAVRDECDHLYNELKQ 506

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G DV  DD  E+ G +FA  +LLG P +++VG K + ++ +E K+R TG  ED+  +E 
Sbjct: 507 LGIDVLLDDRKERPGVKFADCELLGIPHRLVVGDKGLKNNSLEYKYRKTGEGEDVPKDEA 566

Query: 435 INYASHRFSNN 445
           + +       N
Sbjct: 567 VKFIRKVLQAN 577


>gi|251772034|gb|EES52606.1| threonyl-tRNA synthetase [Leptospirillum ferrodiazotrophum]
          Length = 587

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 140/445 (31%), Gaps = 47/445 (10%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIH---QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +L  L+E   RD      +     G      ++  G+  WLP G +    +  I +   +
Sbjct: 178 YLARLEEIRQRDHRKIGKE----QGFFRTLDENGAGMVLWLPRGARIRRVIEEIWKTRHD 233

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G   +  P +   DLW +SG +D Y + M    +         P +      IF+  +
Sbjct: 234 RHGYQYVYTPHIARLDLWKQSGHWDFYRESMFSPMEIEGSEFELKPMNCPFHILIFKEAV 293

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    ++   +R E      G++R R F   DA+ F    + +     K+    
Sbjct: 294 KSYRDLPVRLAELGTVYRYERSGTLHGLLRVRGFTQDDAHIFCRPEDIASE-IGKVLTLV 352

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +    G  +  +   + P G   S E                        +      +
Sbjct: 353 DEMLLPFGFTNRSVYLSTRPEGSVGSDENWA-----------------LATGALEEALKN 395

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I       Y    D+   K  D L    ++S   ++    F    K+      T
Sbjct: 396 AGIPYEIDPGEGVFYGPKIDM---KFHDVLGRTWQLSTIQVD----FNLPEKFD----IT 444

Query: 302 FKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           ++ + G D    M    +     R    ++E       +                     
Sbjct: 445 YRDSSGNDVRPIMIHRALLGSVERFFGILVEHFKGAFPLWLAPEQVTILPIA-------D 497

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  KI   L + G  V  D   E+IG++   A L+  P   ++G +   D  + I+
Sbjct: 498 RHIPYARKIAETLEQEGVRVVTDFRNEKIGAKIRDAQLMKIPQMWVLGDREAQDETISIR 557

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
           HR       +   E +         
Sbjct: 558 HRDGQAGGTLPWREALVAIKEEIRT 582


>gi|297583666|ref|YP_003699446.1| threonyl-tRNA synthetase [Bacillus selenitireducens MLS10]
 gi|297142123|gb|ADH98880.1| threonyl-tRNA synthetase [Bacillus selenitireducens MLS10]
          Length = 649

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 166/441 (37%), Gaps = 33/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L +      +  +G+  WLP G      V   I + + R G
Sbjct: 234 YLQLLEERKERDHRKLGKELGIFAV-SQKVGQGLPLWLPKGATVRRQVERYIVDIEERLG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S DL+  SG +D Y  +M  +   +++ ++  P +      I+++   SY
Sbjct: 293 YDHVYTPVLGSVDLYKTSGHWDHYQDDMFPVLQMDNEDLVLRPMNCPHHMMIYKNEKHSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           RNLP    ++    R E+     G+ R R   + DA+ F    +     + ++      +
Sbjct: 353 RNLPLRIAELGTMHRHEMSGALAGLQRVRAMTLNDAHIFCRPDQLKDE-FIRVVELIQAV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +    +K    R                     + +   + +  +          D++  
Sbjct: 412 YKDFQIKDYYFRLS-------------YRDPEDKEKYVDNDEMWEKAQAMLKEAVDEMGV 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                +   A Y    DV   ++  +L +++ +S   ++    F+   ++      T+ G
Sbjct: 459 EYIEADGEAAFYGPKLDV---QVKTALGKDETLSTVQLD----FHLPNRFD----LTYTG 507

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGKDH   +     G +  +   +    +     +P  +AP +  LI +     V  D 
Sbjct: 508 EDGKDHRPVVIHR--GVVSTMERFVAFLLEEYKGAFPTWLAPVQAELIPVN---DVHLDY 562

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++   L + G  V  D   E++G +   A +   P  +++G +   ++ V ++     
Sbjct: 563 VRQVEDELKRAGVRVHVDVRNEKLGYKIREAQMQKVPYLLVLGDQERDNASVNVRRYGQK 622

Query: 425 IREDMSLEEVINYASHRFSNN 445
             E++SL+  +   +      
Sbjct: 623 DSEEVSLDVFVKSITEDIRTY 643


>gi|262371768|ref|ZP_06065047.1| prolyl-tRNA synthetase [Acinetobacter junii SH205]
 gi|262311793|gb|EEY92878.1| prolyl-tRNA synthetase [Acinetobacter junii SH205]
          Length = 571

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 125/253 (49%), Positives = 171/253 (67%), Gaps = 1/253 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+YSWLP+G + L  V+AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYSWLPMGTRVLKKVDAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA+E+ +P  Q A LW ESGR++ YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNRSGALEVFMPVTQPAALWEESGRFEQYGPELLRFKDRHTNDFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF    E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHANQESLQETYDVMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P++A++G IGG  SHEF VLA +GE  +       D+    E  +  
Sbjct: 181 YSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLASSGEDDIAF-STESDYAANVEMAEAV 239

Query: 241 DIISLNSIVEQWT 253
            +    +  +++ 
Sbjct: 240 LVGERLAATQEFK 252



 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 75/192 (39%), Positives = 105/192 (54%), Gaps = 3/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A Y+   D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G DGK
Sbjct: 379 ERDAKYSEVYDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGEDGK 438

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              V MG YGIG  RVVAA IE + D KGIIWP ++APF+++++ + A       +A E 
Sbjct: 439 PFTVTMGCYGIGVTRVVAAAIEQNFDDKGIIWPQAIAPFEVAIVPMNAHKSPRTLEAAEA 498

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R      
Sbjct: 499 LYAELQAQGYDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDEEST 558

Query: 428 DMSLEEVINYAS 439
           ++S EE+I   +
Sbjct: 559 NLSKEELIKKLA 570


>gi|148555657|ref|YP_001263239.1| threonyl-tRNA synthetase [Sphingomonas wittichii RW1]
 gi|148500847|gb|ABQ69101.1| threonyl-tRNA synthetase [Sphingomonas wittichii RW1]
          Length = 690

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 147/439 (33%), Gaps = 47/439 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      ++ L    +   ++G   W P G +    + A +R + +  G 
Sbjct: 264 LTRLEEAAKRDHRRIGQEMDLF--HLQSEAQGSVFWHPKGFRLWRALEAYMRRKLDAAGY 321

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-------------MIYGPTHEEV 113
           +E+  P L  A  W +SG +  Y + M  + D    A             M   P +   
Sbjct: 322 VEVKTPQLMDARQWEQSGHWGKYRENMFVVPDEIPNAEEEGPVLSGESELMALKPMNCPA 381

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFR  IKSYR+LP    +     R+E      G+MR R+F   DA+ F    +    
Sbjct: 382 HVLIFRQGIKSYRDLPIRMAEFGCCHRNEPHGALHGIMRVRQFTQDDAHIFVREDQLIAE 441

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                      ++  LG +   ++    P     S E    A+        +        
Sbjct: 442 -IKDFCDLLDAVYRDLGFEQYAIKLALRPEKRFGSEEMWDKAEQTLRDAVAASGRATEAF 500

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
             E             +E   A YA   + H   L D++    +V     +         
Sbjct: 501 GWEE------------LEGEGAFYAPKLEFH---LTDAIGRTWQVGTIQADTVLP----- 540

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                + A++ G DG+ H    +    +G       ++   H G+  +W   V     ++
Sbjct: 541 ---ERLDASYVGEDGERHRPVMLHRAILGTFERFIGILIEHHAGRFPLWLAPVQAVVATI 597

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +          D   ++ A+L+  G  V  D   E+I  +     L   P  ++VG +  
Sbjct: 598 V------SDADDYAREVEAKLAAAGLRVESDLRNEKINYKVREHSLAKVPALLVVGKREA 651

Query: 412 SDSKVEIKHRLTGIREDMS 430
            +  V I+      +  + 
Sbjct: 652 EEGTVAIRRLGEQAQTVLP 670


>gi|323527403|ref|YP_004229556.1| prolyl-tRNA synthetase [Burkholderia sp. CCGE1001]
 gi|323384405|gb|ADX56496.1| prolyl-tRNA synthetase [Burkholderia sp. CCGE1001]
          Length = 578

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 136/288 (47%), Positives = 180/288 (62%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQSDFVIGPTHEEVVTDIARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-- 238
           Y+RIF RLGL    + A++G IGG  SHEF V+A+TGE  +       DF    E  +  
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIAETGEDAIAYCPT-SDFAANVEAAEAL 239

Query: 239 --FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
               +  +    +++   P  A  +   E L   L    +      E 
Sbjct: 240 PLCAERAAPAEELKKTPTPGKAKCEAVAEYLNIPLERTIKSIVLATEN 287



 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 107/192 (55%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M+AT    +GK   +
Sbjct: 382 PEPVVADIRNVKKGDPSPDGKGVLDICRGIEVGHVFQLGTKYSEAMNATCLDENGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YG+G  R++ A IE + D KGIIWP+S+APF++ L  +     +  R+  +K+YA 
Sbjct: 442 EMGCYGVGITRILGAAIEQNFDEKGIIWPESIAPFEVVLCPMGYDRSEAVREQADKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R       + +
Sbjct: 502 LVDAGIDVILDDRGERPGVMFADWELIGVPHRLVIGDRGLKEGKLEYQGRRDAEATLLPV 561

Query: 432 EEVINYASHRFS 443
           +E       +  
Sbjct: 562 DEAAQAVIAKVR 573


>gi|148244484|ref|YP_001219178.1| prolyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
 gi|166980170|sp|A5CX68|SYP_VESOH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146326311|dbj|BAF61454.1| prolyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
          Length = 560

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 117/241 (48%), Positives = 164/241 (68%), Gaps = 1/241 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +K  +P  +E P DA+I SH+LM+R G+I + + G+YS+LP+G + L  V  IIR+E
Sbjct: 1   MKTTKLLIPTQKEAPNDAKIISHQLMIRAGLISKLALGLYSYLPIGIRVLQKVENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA E+ +P +Q A+LW ESGR++ YG E+LR  DR+ +    GPTHEEV+T + R 
Sbjct: 61  MNKSGAQEVLMPIVQPAELWKESGRWNKYGAELLRFIDRHQREFCLGPTHEEVITHLARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY+ LP  FYQIQ KFRDE+RPRFGV+R REF+MKDAYSF +     + +Y  M+ +
Sbjct: 121 YLRSYKQLPMNFYQIQTKFRDEIRPRFGVIRMREFIMKDAYSFHIDEASLQETYEVMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF+RLGL    + A+SG IGG+ SHEF VLAD+GE  + C  D  D+    E   F 
Sbjct: 181 YCNIFNRLGLNYRIVLADSGSIGGNTSHEFHVLADSGEDTI-CFSDKSDYAANIEKVTFF 239

Query: 241 D 241
            
Sbjct: 240 K 240



 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 110/231 (47%), Gaps = 9/231 (3%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D      + +    DF   +   D+  I      ++   A      D+ N    D  P+ 
Sbjct: 335 DIDLIVDYSASVLCDFVCGANECDYHLIGVNWQGIKFIDA------DLRNAVDGDYSPDG 388

Query: 275 K--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           K   +  RGIEVGHIF  GTKYS  M A   G  GK     MG YGIG  R++AA IE +
Sbjct: 389 KGKLMIKRGIEVGHIFQLGTKYSSVMKANVIGESGKAVTTTMGCYGIGVTRIIAAFIEQN 448

Query: 333 HDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           HD KGII+  ++APF+I ++ I        +   +++Y +  K   DV  DD  E +G  
Sbjct: 449 HDDKGIIFSQAIAPFQIVIVPINYNKSTRVKALADRLYQQFIKASIDVLLDDRKEHVGIM 508

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FA ++LLG P ++++      +  VE K R    + ++  ++ +++   + 
Sbjct: 509 FADSELLGIPHRIVISDTHADNGSVEYKARNKTNKIEVKFDDALSFIQTKM 559


>gi|300724773|ref|YP_003714098.1| proline tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
 gi|297631315|emb|CBJ92010.1| proline tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
          Length = 573

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 122/235 (51%), Positives = 166/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+W+P G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVVSHKLMLRAGMIRKLASGLYNWMPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW+ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWLESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  + E  + +Y+KM+ +
Sbjct: 121 EVTSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTSQESLQETYDKMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL   P+ A++G IGG  SHEF VLA++GE  +       ++    E
Sbjct: 181 YSKIFTRIGLDFRPVLADTGSIGGSASHEFQVLAESGEDDIVF-STESNYAANIE 234



 Score =  183 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 78/206 (37%), Positives = 117/206 (56%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D+ P+ K   +  RGIEVGHIF  GTKYS  +
Sbjct: 366 DDKHYFGINWERDLPLPEIADIRNVVEGDASPDGKGTLLIKRGIEVGHIFQLGTKYSDAL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +  DG +  V MG YGIG  R+VAA IE SHD +GIIW D++APF+++++ +  H 
Sbjct: 426 KATVQNEDGHNQVVTMGCYGIGVTRIVAAAIEQSHDDRGIIWSDAIAPFQVAILPMNMHK 485

Query: 359 QV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  EK+YA L   G DV +DD  E+ G  FA  +L+G P  +++G + + + ++E
Sbjct: 486 SYRVKEVAEKLYADLRASGIDVIFDDRKERPGVMFADMELIGVPHTLVIGDRNLDNGEIE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K R TG ++ + LE +I Y   +  
Sbjct: 546 YKCRRTGDKQMLKLESIIEYLKGQIQ 571


>gi|157691545|ref|YP_001486007.1| threonyl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|157680303|gb|ABV61447.1| threonine--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 643

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 166/444 (37%), Gaps = 39/444 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + + + RD      +L L   M  + + G+  +LP  Q   + + A  RE ++
Sbjct: 233 LAEYLHFMEEASKRDHRKLGKQLSLF--MFSEEAPGMPFYLPKSQIVRNELMAFSREVRS 290

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+S P + + +LW +SG +D Y + M   ++ +  +    P +      +F++ +
Sbjct: 291 KAQYEEVSTPFMMNQELWEKSGHWDHYHENM-YFSEVDHTSFALKPMNCPGHMLMFKNSL 349

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    +     R E      G+ R R F   DA+ F L  +  +    ++F   
Sbjct: 350 FSYRDLPIRMAEFGQVHRHEFSGALNGLFRVRTFCQDDAHIF-LREDQIEAEIKRIFQLV 408

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G                   E+ V   T   +        D    +     D 
Sbjct: 409 DHVYRTFG------------------FEYSVELSTRPEKALGDDAIWDISESALKNVLDR 450

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     + E   A Y    D H   + D+L  + + +   ++    F    K+      T
Sbjct: 451 LKVDYQLNEGDGAFYGPKIDFH---IKDALQRSHQCATIQLD----FQMPEKFD----LT 499

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +     +     +    I         +    +     +P  +AP ++ +I +     + 
Sbjct: 500 YINEKNEKVRPVVIHSAIFGSLDR--FLGILIEHFAGAFPLWLAPVQVQIIPVSK---IH 554

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C ++  +L K+G  V  D+  E++G +   A +   P   ++G   + +  + I+  
Sbjct: 555 LDHCLEVQQQLRKIGIRVTIDERDEKLGYKMREAQMQKIPYIAVIGDTEMQEKTLNIRQH 614

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  +S+++  + A+ +  + 
Sbjct: 615 GEKTSNQLSIDDFQHMAAQQIKDR 638


>gi|91787975|ref|YP_548927.1| threonyl-tRNA synthetase [Polaromonas sp. JS666]
 gi|123059945|sp|Q12BR3|SYT_POLSJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91697200|gb|ABE44029.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Polaromonas sp.
           JS666]
          Length = 635

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 147/443 (33%), Gaps = 40/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L    I  H+ G+  W P G      V   +R+     
Sbjct: 230 QYLTMLEEAEKRDHRKLGKELDLF--HIDDHAPGLVFWHPKGWTIWQGVEQYMRKVYQDN 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    LW ++G +D Y   M    +   +     P +      IF+  IKS
Sbjct: 288 GYQEVKGPQVIDKTLWEKTGHWDKYRDNMFT-TESEKREYALKPMNCPGHILIFKQGIKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + +     R+E      G+MR R F   D + F    +  K   +       +
Sbjct: 347 YRDLPLRYGEFGQCHRNEPSGGLHGIMRVRGFTQDDGHIFCTEEQILKECVDYTT-LLQK 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G K+I  +  + P     S E                   D    +         
Sbjct: 406 VYTDFGFKNIIYKVATRPDARIGSDE-----------------SWDKAEQALIESLRASG 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I     A Y    +     L D++    +     ++              + A + 
Sbjct: 449 CEFEISPGEGAFYGPKIEY---TLKDAIGRQWQCGTMQVDFSMP--------ERLDAEYV 497

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG  H    +    +G++     ++    +      P  +AP ++S++NI        
Sbjct: 498 GEDGARHRPVMLHRAIVGSLERFIGILI---EEHAGALPTWLAPIQVSVLNITDS---QA 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   ++   L   G  V  D   E+I  +     L   P  ++VG K  +   V ++ R 
Sbjct: 552 EYAREVAKTLQNQGLRVNLDLRNEKITYKIREHSLQKLPYILVVGDKEKAAGAVAVRARG 611

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 MS+E      +   +  
Sbjct: 612 NKDLGVMSIEAFAQQIASDIAQK 634


>gi|301760003|ref|XP_002915815.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Ailuropoda melanoleuca]
 gi|281353585|gb|EFB29169.1| hypothetical protein PANDA_003827 [Ailuropoda melanoleuca]
          Length = 475

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 152/456 (33%), Positives = 228/456 (50%), Gaps = 44/456 (9%)

Query: 3   RSKYFLPI-LQEN---PRDAEI-----ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P  L+E+   P +         S +LML+ G+IH  S G Y  LP   +A++ +
Sbjct: 42  LSRVFQPQNLREDQVLPLEDRSGNLTCKSQRLMLQVGLIHPASPGCYHLLPYTVRAMEKL 101

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE 
Sbjct: 102 ERVIDQEMQAIGGQKVNMPSLSPAELWRATNRWDLMGKELLRLRDRHGKEYCLGPTHEEA 161

Query: 114 MT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T  +      SY+ LPF  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++H
Sbjct: 162 VTALVASQKTMSYKQLPFLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAARH 221

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y  +F RLGL+ + ++A+ G IGG  SHEF + AD GE +            
Sbjct: 222 TYGLVCEAYGSLFRRLGLRCVRVQADVGSIGGTASHEFQLPADIGEDRFAVCPSC----- 276

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                   A T  + + +            ARGIEVGH FY GT
Sbjct: 277 ---------------------GFSANTETLRSSQTDCPTCRGPLTKARGIEVGHTFYLGT 315

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F  A GK    +MG YG+G  R++AA IE       I WP  +AP+++ LI
Sbjct: 316 KYSSIFNAQFTDAQGKPCLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPGLLAPYQVCLI 375

Query: 353 NIKA--HDQVCRDACEKIYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
             K    ++   +    +Y  +++       +V  DD     IG++   A+  G+P  +I
Sbjct: 376 PPKKGSKEEAAAELMGHLYDLITEAVPQLHGEVLLDDRTHLTIGNRLKDANKFGYPFVII 435

Query: 406 VGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASH 440
            G + + D    E+  + T     ++ E V  + S 
Sbjct: 436 AGKRALEDPAHFEVWSQNTSEVVFLTREGVTEFLSQ 471


>gi|158523204|ref|YP_001531074.1| threonyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
 gi|238686905|sp|A9A078|SYT_DESOH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|158512030|gb|ABW68997.1| threonyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
          Length = 637

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 151/442 (34%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +   H+ + G+  + P G K  + +    R E    G
Sbjct: 227 YLTLIEEAKKRDHRKLGAELDLFS--FHEEAAGMPFFHPNGMKLWNALLDYWRLEHRAAG 284

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG +++Y + M  ++  +D      P +      +++    SY
Sbjct: 285 YVEVKTPVMLDRALWEKSGHWENYRENM-YVSVIDDNQYAIKPMNCPGGMLLYKEKRYSY 343

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +I L  R EL     G+ R R F   DA+ F +TP+  +     +      I
Sbjct: 344 RDLPLRVAEIGLVHRHELSGVLSGLFRVRAFHQDDAHIF-MTPDQIEQEIFGVLKLVETI 402

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL    +   + P     + E  V A  G                      D    
Sbjct: 403 YSTFGLGF-HLELSTRPAKSIGTDEQWVKATAG-----------------LRAALDAYGK 444

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             ++ E   A Y    DVH   + D+L    +     +++                ++  
Sbjct: 445 GYAVNEGDGAFYGPKIDVH---IKDALGRTWQCGTIQLDMSLP--------ERFDLSYID 493

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           A  +      +     G++     ++    +     +P  +AP +  L+ +         
Sbjct: 494 AGSEKQRPVMIHRVIYGSIERFLGILI---EHFAGKFPLWLAPTQAVLLPLN---DDMIP 547

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++     + G     DD  E +  +   A +   PL + +G K      + ++    
Sbjct: 548 YAREVRQEFEQAGIRTEIDDRSESLNKKVRQAQIDKIPLIITLGGKEKEARTLSVRTLDG 607

Query: 424 GIREDMSLEEVINYASHRFSNN 445
            +R  +S E     A    +  
Sbjct: 608 QVRHGVSHEAFFAVAKEHIAKR 629


>gi|157826951|ref|YP_001496015.1| threonyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
 gi|166225492|sp|A8GVV1|SYT_RICB8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157802255|gb|ABV78978.1| threonyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
          Length = 633

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 158/440 (35%), Gaps = 41/440 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L      + ++G+  W   G    + +   IR +  +
Sbjct: 229 ESYLFMLEEAEKRDHRKLGKELDLF--HFQEEAQGMVFWHDKGWSVYNTIEQYIRRKIRK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G IE+  P L    LW  SG ++ +  +M    + +DK +   P +      IF+  IK
Sbjct: 287 NGYIEVKTPVLVDKSLWELSGHWEKFRDDMF-ALETDDKTLALKPMNCPCHVQIFKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  L  R+E      G+MR R  +  DA+ F    + +  + +       
Sbjct: 346 SYRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCAEEQITDETVSF-CKLLT 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   I ++    P     S E                   D    +     +  
Sbjct: 405 EVYKDFGFTDIKVKFSDRPEVRAGSSE-----------------TWDKAENALKEAVEKA 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               ++     A Y    +     L D++    +     ++    F    +    + A++
Sbjct: 448 GYSYTLNPGEGAFYGPKLEF---VLTDAIGRQWQCGTLQMD----FVLPER----LDASY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             A G+      +    +G++     ++   + G+  +W           + I       
Sbjct: 497 VAASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW------LAPVQVAIATITSDL 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L + G  V  +   ++I  +         P+  ++G +   + +V I+  
Sbjct: 551 NDYALEVQKALIESGVRVDINISPDKINYKIREFSNQKVPMIAVIGKQEKENKQVTIRRL 610

Query: 422 LTGIREDMSLEEVINYASHR 441
            T  +E +S+E++I Y    
Sbjct: 611 GTTEQEVLSIEQLIEYIREE 630


>gi|212691282|ref|ZP_03299410.1| hypothetical protein BACDOR_00773 [Bacteroides dorei DSM 17855]
 gi|237712289|ref|ZP_04542770.1| threonyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|237726428|ref|ZP_04556909.1| threonyl-tRNA synthetase [Bacteroides sp. D4]
 gi|212666514|gb|EEB27086.1| hypothetical protein BACDOR_00773 [Bacteroides dorei DSM 17855]
 gi|229434954|gb|EEO45031.1| threonyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4]
 gi|229453610|gb|EEO59331.1| threonyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
          Length = 646

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 156/445 (35%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVMLEEAKKRDHRKIGKEMDLFM-FTDMVGKGLPMWLPKGTALRIRLQDFLRRIQARY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + + +L++ SG Y  YGK+  +        +     P +      I+++  
Sbjct: 289 DYQEVMCPPIGNKNLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++    
Sbjct: 349 RSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHLFCR-PDQVKEEFLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  +++  +                  D    + +   D           +  +
Sbjct: 408 NIVFKSMNFENVEAQISLR--------------DKVNREKYIGSDENWEKAEQAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLTAKVEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G+D + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  EK+ A L K       DD  E+IG +    ++   P  +IVG K   + +V ++
Sbjct: 557 KFNEYAEKVKAELRKFDVRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVAVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M +EE     +   SN
Sbjct: 617 KQGEGDKGTMKIEEFGKNIAEEVSN 641


>gi|301629493|ref|XP_002943874.1| PREDICTED: prolyl-tRNA synthetase-like [Xenopus (Silurana)
           tropicalis]
          Length = 657

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 123/259 (47%), Positives = 167/259 (64%), Gaps = 4/259 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLMLR G+I +   GIYS++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMLRAGLIKKLGAGIYSYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E ++P +Q A+LW E+GR++  G E+LR+ DR+D+  +  PT EEV+TDI R 
Sbjct: 61  MDRAGAAECAMPVVQPAELWQETGRFEKMGPELLRIKDRHDRDFVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD  P  +K SY  M  +
Sbjct: 121 ELRSYKQLPRNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDPASAKASYQVMAAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL+   + A+SG IGGDLS EF V+A TGE  +        +    E     
Sbjct: 181 YCRIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYCPQSH-YAANMEKA--- 236

Query: 241 DIISLNSIVEQWTAPYAAT 259
           + ++         AP A T
Sbjct: 237 EALAPAGPRPGAAAPMAKT 255



 Score = 43.2 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
             +D+ N    D  P+   +    R IEVGH+FY GTKYS  M ATF G DGK 
Sbjct: 392 VVADLRNVVAGDKSPDGAGELCIERAIEVGHVFYLGTKYSKAMGATFLGEDGKP 445


>gi|258543038|ref|YP_003188471.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634116|dbj|BAI00092.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637176|dbj|BAI03145.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640228|dbj|BAI06190.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643285|dbj|BAI09240.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646340|dbj|BAI12288.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649393|dbj|BAI15334.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652379|dbj|BAI18313.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655437|dbj|BAI21364.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-12]
          Length = 645

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 152/438 (34%), Gaps = 41/438 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      ++ L      + + G   W   G +    +   +R  Q R G 
Sbjct: 235 LHQLEEAEKRDHRRIGKEMGLF--HFQEEAVGQVFWHAKGWRLYTALQDYMRRAQTRHGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            E+  P L    LW  SG +D Y   M     +  +K +   P +      IFR  ++SY
Sbjct: 293 QEVRTPQLVDRALWEASGHWDKYRHHMFIATVEDENKTLALKPMNCPCHVQIFRHGLRSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R E      G+MR R F   DA+ F    + +  +  +       +
Sbjct: 353 RELPLRMAEFGACHRYEPSGALHGLMRVRGFTQDDAHIFCTEDQIADETV-RFVKMLHDV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +  LG + + ++    P     S E                   D    +          
Sbjct: 412 YQDLGFEHVRVKFADRPEQRAGSDE-----------------VWDKAENALKEACTVAGV 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D++  + +     +++             + A++ G
Sbjct: 455 EYEHNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVDLVLP--------ERLDASYIG 503

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D G+   V +    +G+      ++   H G+  +W   V     S++           
Sbjct: 504 EDSGRHRPVMLHRAILGSFERFLGILIEQHAGRFPLWLAPVQVVVASIV------SDAAP 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++ A L + G  V  D   ++I ++     +   P+ ++VG +   +  V ++   T
Sbjct: 558 YAEEVAAALREAGLAVEADVRNDKINAKVREHSVARVPVILVVGRREAEERTVAMRRLGT 617

Query: 424 GIREDMSLEEVINYASHR 441
            ++E +SL++ +    + 
Sbjct: 618 QVQETLSLDDAVARLKNE 635


>gi|114331243|ref|YP_747465.1| prolyl-tRNA synthetase [Nitrosomonas eutropha C91]
 gi|123026746|sp|Q0AGN2|SYP_NITEC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114308257|gb|ABI59500.1| prolyl-tRNA synthetase [Nitrosomonas eutropha C91]
          Length = 568

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 129/292 (44%), Positives = 175/292 (59%), Gaps = 3/292 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++FL  L+E P +AE+ASH+LMLR G+I +   G+Y+W+PLG + L  +  IIREE
Sbjct: 1   MRVSQFFLSTLKEAPAEAELASHRLMLRAGLIKRLGSGLYTWMPLGLRILHKIEHIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GA+E+ +P +  A+LW ESGR+D +G +ML++ DR+     +GPTHEEV+ DI R 
Sbjct: 61  MNSSGALELLMPAVHPAELWQESGRWDVFGPQMLKIQDRHQHDFCFGPTHEEVIVDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M  +
Sbjct: 121 EIKSYRQLPINFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHADLGSLEQTYQLMHET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GLK   + A++G IGG  SHEF VLAD+GE  +    D  D+    E  +  
Sbjct: 181 YSRIFTRIGLKFRAVAADTGAIGGSGSHEFHVLADSGEDAIAFCPD-SDYAANIELAEAI 239

Query: 241 DIISLNSIVEQWTAPYAATSD--VHNEKLFDSLPENKRVSARGIEVGHIFYF 290
               L           A        +   F S+P  + +    +     FY 
Sbjct: 240 SHGILRKDPAGVMKKIATPDRKSCSDVAEFLSVPIEQTLKTLAVIADGRFYL 291



 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/183 (39%), Positives = 102/183 (55%), Gaps = 3/183 (1%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K      RGIEVGHIF   TKYS  M AT+    G+   ++MG YG
Sbjct: 382 DIRNVVTGDPSPDGKGMLEICRGIEVGHIFQLRTKYSEKMKATYLDESGQTQILEMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-CEKIYARLSKVGC 377
           IG  R+VAA IE + D +GII+P ++APF++S+I I  H  +   A  EK+Y      G 
Sbjct: 442 IGVSRIVAAAIEQNCDERGIIFPVAIAPFQLSIIPIGYHKNLQIQAEVEKLYRACRAAGI 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G  FA  +L+G P ++++G + + D  VE + RL      +SL+EVI  
Sbjct: 502 EVLLDDREERPGVMFADQELIGIPHRIVIGERNLRDGMVEYQGRLDKTSRLLSLQEVIPV 561

Query: 438 ASH 440
              
Sbjct: 562 IRE 564


>gi|94986834|ref|YP_594767.1| prolyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
 gi|114152206|sp|Q1MRD0|SYP_LAWIP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94731083|emb|CAJ54446.1| Prolyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
          Length = 575

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 142/389 (36%), Positives = 196/389 (50%), Gaps = 8/389 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P L+E P DAE+ SHKL++R GMI + + GIY+WLPLG K L+   +IIR E
Sbjct: 1   MRWSQCYIPTLKEAPGDAELLSHKLLIRAGMIRKLTSGIYTWLPLGLKTLNKAISIIRSE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q ADLW ESGR+D YGKE+LR+ DR+D+    GPTHEEV+T + R 
Sbjct: 61  MNRIGAEEILMPMVQPADLWKESGRWDQYGKELLRIKDRHDREYCLGPTHEEVVTHLLRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR+REFLMKDAYSFD   EG+  SY+ MF +
Sbjct: 121 EVRSYRQLPINVYQIQTKFRDEIRPRFGLMRAREFLMKDAYSFDQDNEGADISYHTMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDF 239
           Y  IF  + L    + A+SG IGG+ SHEF+V+AD+GE  + FC K      I    T  
Sbjct: 181 YKAIFTCMALDFRAVEADSGSIGGNFSHEFMVIADSGEDTIAFCRKCDWAANIEHAATLP 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTKYSLP 297
               +L                +     F ++PE + +      I+   +          
Sbjct: 241 PQTKALTLEKSMEEVVTPGQHTIKAVSTFLTIPEQQIIKTILYTIDNKPVAVLVRGDREV 300

Query: 298 MSATFKGADGKDHYVQMG----SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                K                    GA    A  +  +           V    +   N
Sbjct: 301 NEVKVKNMLDATVITMATPEQVHQWTGAPVGFAGPVGFTAGPIIADHELMVYNDWVVGAN 360

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                 +  D    +   ++     +  D
Sbjct: 361 KPDKHILHVDLARDVQN-ITFADIRLITD 388



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/177 (42%), Positives = 106/177 (59%), Gaps = 2/177 (1%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+      D  P   R     +GIEVGH+F  GTKYS  M+A F   +G++  + MG Y
Sbjct: 381 ADIRLITDADGCPSCGREIALTKGIEVGHVFKLGTKYSKSMNAFFLDENGEEQLMVMGCY 440

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  RV+AA IE ++D  GII+P  +APF+I LIN+   D+       +IY      G 
Sbjct: 441 GIGVSRVIAACIEQNNDKYGIIFPPPLAPFEIMLINLDPRDESVVMKASEIYQFFLSEGI 500

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +VF DD  E+ G +F  ADLLGFP+QVI+G+K +++  +E+K+R TG +   SLE  
Sbjct: 501 EVFLDDREERPGIKFNDADLLGFPIQVIIGAKSLANGIIEVKNRKTGEKSSFSLERF 557


>gi|172057852|ref|YP_001814312.1| prolyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
 gi|226701289|sp|B1YI68|SYP_EXIS2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|171990373|gb|ACB61295.1| prolyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
          Length = 566

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 121/319 (37%), Positives = 175/319 (54%), Gaps = 5/319 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE  SH+L+LR G + Q++ GIYS+LPL ++ L  +  IIR+E
Sbjct: 1   MKQSKLFMPTLREVPSDAEAISHQLLLRAGFMRQNAAGIYSYLPLAKRVLSKIETIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P +Q A+LW E+GR+D YG E++RL DR+D+    G THEE++T I R 
Sbjct: 61  MEGAGAQELLMPAIQPAELWEETGRWDIYGPELMRLTDRHDRRFALGATHEELITSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ+K+RDE RPRFG++R REF+MKDAYSF  T E  +  Y  MF +
Sbjct: 121 ELNSYKKLPVNLFQIQMKYRDERRPRFGLLRGREFIMKDAYSFHSTQESLEEEYQNMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL+  P+ A+SG IGG  +HEF  LA  GE  +  S    D+    E  +  
Sbjct: 181 YTKIFTRVGLEFRPVVADSGAIGGSGTHEFHALAAIGEDTIVYSDQ-SDYAANLEMAESV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI----EVGHIFYFGTKYSL 296
           D  +      +             E +   L   ++ S + +    E G +         
Sbjct: 240 DQYTKQDKAPEALEEVHTGDAKTIEAVSSVLGLPEQESIKTVVFKTEQGLVMALVRGDHE 299

Query: 297 PMSATFKGADGKDHYVQMG 315
                 K   G    +   
Sbjct: 300 VNDIKLKNYLGALDIMMAT 318



 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 114/225 (50%), Gaps = 6/225 (2%)

Query: 224 SKDFMDFPIPSEN---TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VS 278
            K   D+ + +        +   +    V+      A  +D+   +  D  P+ +     
Sbjct: 340 MKIVADYAVRALTNSVCGANKSETHYVHVDPSRDFEAEYTDLRFVEEGDVSPDGQGHVKF 399

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVG +F  GT+YS  M+ATF    GK   + MG YGIG  R ++AV+E  +D +GI
Sbjct: 400 ARGIEVGQVFKLGTRYSEGMNATFLDEGGKAQPLIMGCYGIGVSRTMSAVVEQHYDERGI 459

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP ++APF + LI +   +    +  E +Y  L+  G  V +DD  E+ G +FA ADL+
Sbjct: 460 IWPKAIAPFDVHLIAVNGKNAEQLEVAETVYRELTAAGFSVLFDDRKERAGVKFADADLI 519

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P+++ VG K   D  VE+K R  G  E++   +++      + 
Sbjct: 520 GLPVRINVGKK-APDGIVELKARRGGEAEEIQQADLLEAVRSLYE 563


>gi|319404307|emb|CBI77900.1| Threonyl-tRNA synthetase [Bartonella rochalimae ATCC BAA-1498]
          Length = 654

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 151/445 (33%), Gaps = 39/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L      + S G+  W P G K   N+ + +R   + 
Sbjct: 233 KAYLHMLEEAEKRDHRRLGREMDLF--HFQEESPGMIFWHPKGWKMFQNLISYMRRRLDN 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIY--GPTHEEVMTDIF 118
               E+  P +    LW  SG +  Y + M +     D  +    Y   P +      IF
Sbjct: 291 HKYAEVQAPQVLDKSLWEISGHWGWYKENMFKTIPAADDWNDEYTYALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  L  R E      G+MR R F   DA+ F    + +    +  
Sbjct: 351 KHGLKSYRDLPVRLAEFGLVHRYEPSGSLHGLMRVRSFTQDDAHIFCTEEQLADECLSIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G K I ++  + P     S E    A+   T V             E +
Sbjct: 411 -DLILSTYADFGFKEISLKLSTRPEKRVGSDELWDHAENIMTSVL--------KTIEEKS 461

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                IS+   +    A Y    +     L D++    +     ++      FG      
Sbjct: 462 SGCVKISI---LPGEGAFYGPKFEY---TLTDAIGREWQCGTTQVDFNLPERFG------ 509

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   D +      +     G+M     ++  +  G    W         ++     
Sbjct: 510 --AFYIDKDSEKRQPVMIHRAIFGSMERFLGILIENFAGHIPFWLAPQQIVVATIT---- 563

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  +KI  +L  +G     D   E+I  +     L   P+ ++ G +    + V
Sbjct: 564 --SDANEYAKKITEKLKALGLSAKLDSRNEKINYKIREHSLQKVPVILVCGKQEAQTNSV 621

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +  + +E+V       
Sbjct: 622 NMRRLGSIEQTFLPIEKVFAQLLDE 646


>gi|254516715|ref|ZP_05128774.1| prolyl-tRNA synthetase [gamma proteobacterium NOR5-3]
 gi|219675138|gb|EED31505.1| prolyl-tRNA synthetase [gamma proteobacterium NOR5-3]
          Length = 571

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 121/241 (50%), Positives = 164/241 (68%), Gaps = 1/241 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ +   +E P DAEI SH+LMLR G+I + S G+Y+W+P+G K L  V  ++REE
Sbjct: 1   MRSSEFLITTHKETPADAEIVSHRLMLRAGLIRKLSSGLYTWMPMGLKVLRKVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+EM++P +Q A+LW ESGR++ YG E+LR+ DR+++    GPTHEEV+TDI R+
Sbjct: 61  MDAAGALEMAMPMVQPAELWQESGRWEQYGPELLRIQDRHNRDFCLGPTHEEVITDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K RDE+RPRFG+MR+REFLMKDAYSF       + +Y  M  +
Sbjct: 121 EISSYKQLPLNLYQIQNKVRDEIRPRFGIMRAREFLMKDAYSFHSDQASLEETYQVMHGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y R+F RLGL   P+ A+SG IGG+ SHEF VLAD+GE  +  S    D+    E  +  
Sbjct: 181 YSRVFERLGLDFRPVMADSGSIGGNTSHEFHVLADSGEDAIAFSDS-SDYAANIERAETL 239

Query: 241 D 241
           D
Sbjct: 240 D 240



 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 110/187 (58%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ +    D  P+ +      RGIEVGHIF  GTKYS  M+A     +G++  + MG Y
Sbjct: 382 ADLRSVVSGDPSPDGQGSLQIRRGIEVGHIFQLGTKYSEAMNARVLDENGRNVTISMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           GIG  R+VAA IE +HD +GIIWP+++ PF+++++ +  H      +A E ++A+  + G
Sbjct: 442 GIGVSRIVAAAIEQNHDDRGIIWPNAMTPFQLAIVPLNMHKSTAVAEAAEALHAQCLEEG 501

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD  E+ G +FA  +LLG P ++++G + +++ ++E + R     + + + + + 
Sbjct: 502 IDVLMDDRNERPGVKFADMELLGIPHRIVIGDRSLAEGELEYQGRRDSEAQRVPVAQAMK 561

Query: 437 YASHRFS 443
           + + +  
Sbjct: 562 FLTDQLE 568


>gi|91205350|ref|YP_537705.1| threonyl-tRNA synthetase [Rickettsia bellii RML369-C]
 gi|122990926|sp|Q1RJ48|SYT_RICBR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91068894|gb|ABE04616.1| Threonyl-tRNA synthetase [Rickettsia bellii RML369-C]
          Length = 635

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 159/444 (35%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L      + ++G+  W   G    + +   IR +  +
Sbjct: 229 ESYLFMLEEAEKRDHRKLGKELDLF--HFQEEAQGMVFWHDKGWSVYNTIEQYIRRKIRK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G IE+  P L    LW  SG ++ +  +M    + +DK +   P +      IF+  IK
Sbjct: 287 NGYIEVKTPVLVDKSLWELSGHWEKFRDDMF-ALETDDKTLALKPMNCPCHVQIFKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  L  R+E      G+MR R  +  DA+ F    + +  + +       
Sbjct: 346 SYRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCAEEQITDETVSF-CKLLT 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G   I ++    P     S E                   D    +     +  
Sbjct: 405 EVYKDFGFTDIKVKFSDRPEVRAGSSE-----------------TWDKAENALKEAVEKA 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               ++     A Y    +     L D++    +     ++    F    +    + A++
Sbjct: 448 GYSYTLNPGEGAFYGPKLEF---VLTDAIGRQWQCGTLQMD----FVLPER----LDASY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             A G+      +    +G++     ++   + G+  +W           + I       
Sbjct: 497 VAASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW------LAPVQVAIATITSDL 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L + G  V  +   ++I  +         P+  ++G +   + +V I+  
Sbjct: 551 NDYALEVQKALIESGVRVDINISPDKINYKIREFSNQKVPMIAVIGKQEKENKQVTIRRL 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            T  +E +S+E++I Y     S  
Sbjct: 611 GTTEQEVLSIEQLIEYIREENSKY 634


>gi|313202757|ref|YP_004041414.1| ser-tRNA(thr) hydrolase; threonyL-tRNA synthetase [Paludibacter
           propionicigenes WB4]
 gi|312442073|gb|ADQ78429.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Paludibacter
           propionicigenes WB4]
          Length = 648

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 151/446 (33%), Gaps = 40/446 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +Y + + +   RD      +L L   M  +   KG+  WLP G      +   +++ Q R
Sbjct: 230 EYLVLLEEAKKRDHRKIGKELELF--MFSEMVGKGLPMWLPRGTALRLRLEDFLKKIQRR 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSH 121
               ++  P + +  L+V SG Y  YGK+  +        +  +  P +     +I++  
Sbjct: 288 FDYQQVMTPHIGNKQLYVTSGHYAKYGKDSFQPIHTPEEGEEYLLKPMNCPHHCEIYKFK 347

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SY+ LP    +    +R E      G+ R R F   DA+ F    +     + K+   
Sbjct: 348 PRSYKELPVRLAEFGTVYRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLKVMDI 406

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              IF+ L  ++   +                  D    + +   D           +  
Sbjct: 407 IFIIFNALEFENFEAQISLR--------------DPNNREKYIGSDENWEKAEQSIIEAC 452

Query: 241 DIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               L + VE    A Y    D     + D++    ++    ++                
Sbjct: 453 AEKGLKARVETGEAAFYGPKLDFM---VRDAIGRKWQLGTIQVDYNLP--------ERFE 501

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + G D + H    +     G+M    AV+     GK  +W           + I    
Sbjct: 502 LEYTGEDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVVILPIS 555

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D   +I   ++     V  DD  E+IG +    +L   P  +IVG K   + +V +
Sbjct: 556 EKFNDYAFQIAKEMNAQDIRVQVDDRNEKIGRKIRDNELKRIPYMLIVGEKEAENGEVSV 615

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           + +  G +  M + +          +
Sbjct: 616 RRQGEGDKGTMKVADFSKLILDEVDS 641


>gi|82523942|emb|CAI78664.1| prolyl-tRNA synthetase [uncultured delta proteobacterium]
          Length = 574

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 126/237 (53%), Positives = 166/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  LP L+E P DAE+ SHKLM+R GMI + + GIYS+LPLG + +  V  I+REE
Sbjct: 1   MRYSEMHLPTLREIPSDAEVVSHKLMIRAGMIRKLTSGIYSYLPLGYRVIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P +Q ++LW ESGR+  YGKE+LR  DR+D+   +GPTHEEV+TD+ R+
Sbjct: 61  MNKAGAQEVFMPMVQPSELWEESGRWVHYGKELLRFRDRHDRPYCFGPTHEEVITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+YR LP   YQIQ KFRDE+RPRFGVMR REF MKDAYSFD    G+++SY KMF +
Sbjct: 121 DVKTYRQLPLNLYQIQTKFRDEVRPRFGVMRCREFGMKDAYSFDADEAGAQNSYEKMFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF R GL+  P+ A+SG IGG  SHEF+V+AD+GE  +   +    +    E  
Sbjct: 181 YNNIFRRCGLRFRPVEADSGSIGGKYSHEFMVMADSGEDAMVFCEKCS-YAANLEKA 236



 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 112/191 (58%), Gaps = 2/191 (1%)

Query: 256 YAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
             A +D+   +  DS P    K   ARGIEVGH+F  GTKYS  M A +   DG++  + 
Sbjct: 378 VEAYTDLRVVEENDSCPRCAGKIKFARGIEVGHVFKLGTKYSKAMKAVYLDKDGQEKVMI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA IE ++D +GI+WP  +AP+ + +  +  +D+   D  E +Y ++ 
Sbjct: 438 MGCYGIGIGRTVAACIEQNYDDQGIVWPVPLAPYHVIITPVNVNDKSISDVAENLYNKMQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               +V  DD  E+ G +F  ADL+G PL+V++G K ++ +KVE+K R TG  + ++++E
Sbjct: 498 DKKIEVILDDRDERAGVKFNDADLIGIPLRVVIGQKNLAQNKVELKIRKTGENKLIAVDE 557

Query: 434 VINYASHRFSN 444
           ++N      + 
Sbjct: 558 IVNEVKEFVNK 568


>gi|56459994|ref|YP_155275.1| prolyl-tRNA synthetase [Idiomarina loihiensis L2TR]
 gi|81821672|sp|Q5QW31|SYP_IDILO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56179004|gb|AAV81726.1| Prolyl-tRNA synthetase [Idiomarina loihiensis L2TR]
          Length = 567

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAEI SH+LMLR GMI + + G+Y+W P G + L  V  ++REE
Sbjct: 1   MRSSKYLLSTLKETPSDAEIVSHQLMLRAGMIRKVAAGLYTWTPTGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P +Q ADLW ESGR+D YG E+LR+ DRN +  + GPTHEE+++ + R 
Sbjct: 61  MEAINALEILMPMVQPADLWQESGRWDDYGPELLRIKDRNQRDFLLGPTHEEIISQLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T +QIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLTLFQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDESLQKTYDDMYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YCRIFERLGLDYRPVIADTGSIGGSHSHEFHVLASSGEDAIAFSDS-SDYAANVE 234



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/187 (36%), Positives = 106/187 (56%), Gaps = 3/187 (1%)

Query: 259 TSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+ N    D     + K   ARGIEVGHIF  G KYS  M        GK   + MG 
Sbjct: 381 VVDIRNVVAGDPSPCGQGKVKIARGIEVGHIFQLGKKYSDAMKVGVLSESGKHETLTMGC 440

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  R+VAA IE ++D +GI WP+++APF++ ++ +  H     ++A EK+Y  L   
Sbjct: 441 YGIGVSRIVAAAIEQNNDERGICWPEALAPFQVVIVPMNMHKSARVQEAAEKLYTDLKAQ 500

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV +DD  E+ G  F   +L+G P QV+VG + + +++VE + R  G ++ ++L++ I
Sbjct: 501 GIDVLFDDRKERPGVMFTDMELIGIPHQVVVGERNLDENQVEYQSRKGGEKQKINLDDCI 560

Query: 436 NYASHRF 442
           ++   + 
Sbjct: 561 SFIQQQL 567


>gi|330896119|gb|EGH28340.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 571

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 117/237 (49%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + +  +Y+WLP G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASVLYTWLPRGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y++M ++
Sbjct: 121 ELNSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E  
Sbjct: 181 YSNIFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSD-GSDYAANIEKA 236



 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 111/207 (53%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 364 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D +APF+I+L+ ++   
Sbjct: 424 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDILAPFQIALVPLRYET 483

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 484 DAVREATDKLYADLTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   + +
Sbjct: 544 EYKSRTESQPQAIAVADVLSFIQGKVN 570


>gi|206889512|ref|YP_002249047.1| threonyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741450|gb|ACI20507.1| threonyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 617

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 154/444 (34%), Gaps = 41/444 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      +L L   +  +   G+  WLP G      +    ++E  + G
Sbjct: 211 YLNFLEEVKKRDHRRLGKQLRLFE-ISEEVGPGLIIWLPNGAIVRKIIEDFWKDEHLKAG 269

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DLW +SG  D Y + M    + ++ A    P +      +++S ++SY
Sbjct: 270 YQLLYTPHIARLDLWRKSGHLDFYRENMYSPMEIDEIAYQLKPMNCPFHIQVYKSELRSY 329

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  F ++   +R E      G++R R F   DA+ F  T E  +    K+    + I
Sbjct: 330 RELPLRFAELGTVYRYERSGVLHGLLRVRGFTQDDAHIFC-TEEQLEEEIQKVLDFTVFI 388

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G  +  +   + P     S E                   +    +          
Sbjct: 389 LSTFGFTAYDIYISTRPEKYVGSIE-----------------NWEKATFALEEALKTRNL 431

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I       Y    D+   K+ D L  + + S   ++                 T++G
Sbjct: 432 PYQIDPGEGVFYGPKIDI---KIKDVLNRSWQCSTIQVDFNIP--------ERFDITYRG 480

Query: 305 ADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            DGK+H   M    +     R +  +IE       +                    +   
Sbjct: 481 KDGKEHRPIMIHRALMGSLERFMGVLIEHYAGAFPLWLAPVQIEVMSI-------SEKHA 533

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++Y +L      V  +   E+IG +   A L   P  VI+G K + ++ + ++ R 
Sbjct: 534 DYAARVYRQLINNDFRVKLNIDNEKIGYKIRNATLNKVPYMVIIGDKEIENNAITVRKRD 593

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               E +  E+ I +  +   + +
Sbjct: 594 GENFELIKFEKFIEFLVNDIKDKK 617


>gi|91786735|ref|YP_547687.1| prolyl-tRNA synthetase [Polaromonas sp. JS666]
 gi|123356060|sp|Q12FA3|SYP_POLSJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91695960|gb|ABE42789.1| prolyl-tRNA synthetase [Polaromonas sp. JS666]
          Length = 580

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 119/237 (50%), Positives = 157/237 (66%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SH+LM+R GMI +   GIYS++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHQLMMRAGMIKKLGAGIYSYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM++P +Q A+ W E+GR++  G E+LR+ DR+ +  +  PT EEV+TD+ R 
Sbjct: 61  MNRAGAVEMTMPVIQPAEFWQETGRFEKMGPELLRIKDRHGRDFVVQPTSEEVITDVMRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG+MR REF MKDAYSFD     +K SY  M  +
Sbjct: 121 DIKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDQASAKASYQIMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE  +       D+    E  
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC-PGSDYAANMEKA 236



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 108/188 (57%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    +  P+ K V    RGIEVGH+FY GTKYS  M+ATF   +GK  +++MG 
Sbjct: 392 VADLRNVVAGNPSPDGKGVLAIERGIEVGHVFYLGTKYSQAMNATFLDENGKPQFLEMGC 451

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKV 375
           YGIG  R+ AA IE +HD +GIIWPD++APF + +  I        + A +K+Y  L   
Sbjct: 452 YGIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVICPISPDRFADVKAAADKLYGELLAA 511

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD GE+ G+ FA  +L+G P +V +G + + + ++E +HR       +     +
Sbjct: 512 GVDVILDDRGERPGAMFADWELIGVPHRVTIGDRGLKEGQLEYQHRRDAASSKVDAATAL 571

Query: 436 NYASHRFS 443
           ++   + +
Sbjct: 572 DFLKGKLA 579


>gi|51893696|ref|YP_076387.1| threonyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
 gi|73919833|sp|Q67LA3|SYT_SYMTH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|51857385|dbj|BAD41543.1| threonyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
          Length = 651

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 157/442 (35%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L      + + G   WL  G +    +    R+ Q   G
Sbjct: 234 YLFRLEEARRRDHRRLGPELGLYR--FEEVAPGFAFWLDKGYRLYRELENWSRKLQEARG 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+S P + S+ L+  SG +  Y + M       D+     P +      +++S I+SY
Sbjct: 292 YEEVSTPWIVSSKLYETSGHWQHYRQNMF-EIRAEDQDFATKPMNCPCHCVLYKSQIRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G++R R F   DA+   + P+  +    ++      I
Sbjct: 351 RDLPLKIAEYGPLSRFEASGTLHGLLRVRGFHQDDAH-LFVRPDQIEEQIREVIGLVDTI 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +  LGL+    +  + P       E                   +    +     D +  
Sbjct: 410 YGTLGLEYEI-KLSTRPEDFMGDIE-----------------LWNEAEAALARALDGMGR 451

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    D     + D+L    + +   ++    F    K+      T+ G
Sbjct: 452 SYKLNPGDGAFYGPKLDFD---VTDALGRKWQCATVQLD----FQLPIKFD----LTYIG 500

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGK+H    +    +G +     ++    +     +P  +AP +  ++ I         
Sbjct: 501 EDGKEHRPVMIHRAIMGTLERFIGILT---EHYAGNFPLWMAPVQARVLPITDRHH---A 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A+L + G  V  D   E++G +   A+LL  P  ++VG K      V ++ R  
Sbjct: 555 YAGEVVAKLQEAGLRVEGDYRNEKVGYKIREAELLKIPFILVVGDKEAEAGAVAVRRRGM 614

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                M L + +  A    ++ 
Sbjct: 615 KDLGPMPLADFLALAQSEIASK 636


>gi|304415438|ref|ZP_07396087.1| threonyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
 gi|304282702|gb|EFL91216.1| threonyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
          Length = 652

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 78/452 (17%), Positives = 145/452 (32%), Gaps = 50/452 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    + + + G+  W   G      + + +R +     
Sbjct: 232 YLQKIEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHHNGWTIFRELESFVRAKLQEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPLMMDRLLWAKTGHWENYAENMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F  T +  +   N        +
Sbjct: 349 RDLPLRMAEFGSCHRNESSGALHGLMRVRAFTQDDAHIFC-TEQQVRAEVNNCIAMIYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E    A+                         +   
Sbjct: 408 YRVFGFEKIEVKLSTRPEKRIGSDEIWTAAE-----------------NDLAAALTENGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D L    +     ++       G        A++  
Sbjct: 451 AFDWQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFSLPGRLG--------ASYID 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G++     ++    +     +P  +AP +  +INI        D
Sbjct: 500 ENSQRTVPVMIHRAILGSIERFIGILI---EEYAGCFPTWLAPVQAVVINITDKH---VD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRL 422
             +KI   L   G  V  D   E++G +     L   P  ++ G K V    KV ++   
Sbjct: 554 YAKKISTALQHAGIRVKTDLRNEKVGLKIREHTLRRVPYMLVCGDKEVESGNKVSVRTLG 613

Query: 423 T---------GIREDMSLEEVINYASHRFSNN 445
           T                L+ ++        N 
Sbjct: 614 TRTRSGAYHSKDLGSCDLDVILERLLTEIGNR 645


>gi|34496029|ref|NP_900244.1| prolyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
 gi|81834766|sp|Q7P0J3|SYP_CHRVO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|34101883|gb|AAQ58250.1| prolyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
          Length = 568

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 123/235 (52%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DA+I S KLM+R G I + + GIYSW+P+G + +  V  IIREE
Sbjct: 1   MRASQFFISTLKEAPADADITSQKLMIRAGFIRKQAAGIYSWMPMGLRVVRKVETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G IE+S+P +Q A+LW E+GR+D+ G E+LR  DR+++     PT EEV+TDI R 
Sbjct: 61  MNRAGGIEVSLPVVQPAELWQETGRWDAMGAELLRFKDRHERDFALQPTAEEVITDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP  FYQIQ KFRDE RPRFGVMR REF MKDAYSFD + E +  SY+ M+ +
Sbjct: 121 ELRSYRALPKNFYQIQTKFRDERRPRFGVMRGREFTMKDAYSFDRSAEDAGKSYDNMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL    + A++G IGGD SHEF V+ADTGE  +       ++    E
Sbjct: 181 YRRIFDRLGLTYRAVAADTGAIGGDRSHEFQVIADTGEDAIVYCPT-SEYAANIE 234



 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 109/196 (55%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                     D+ N    D  P+ +      RGIEVGH+FY GTKYS  M+ATF   DGK
Sbjct: 373 GRDCAEPEVFDIRNVVEGDPSPDGQGALAIQRGIEVGHVFYLGTKYSAAMNATFLDEDGK 432

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
               +MG YGIG  R++ A IE ++D KG+IWPDS+APF + +  +     +  ++A +K
Sbjct: 433 PKPFEMGCYGIGVTRILGAAIEQNYDDKGMIWPDSIAPFAVVVCPVGYDRSEAVKEAADK 492

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA L   G DV  DD GE+ G+ FA  +L+G P +V +G + + + KVE +HR      
Sbjct: 493 LYADLQARGVDVMLDDRGERPGAMFADWELIGAPHRVTIGDRGLKEGKVEYQHRRDSEAT 552

Query: 428 DMSLEEVINYASHRFS 443
            ++ + ++ +   + +
Sbjct: 553 AVAADAILEHVLSKLA 568


>gi|303326973|ref|ZP_07357415.1| proline--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
 gi|302862961|gb|EFL85893.1| proline--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
          Length = 580

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 125/261 (47%), Positives = 170/261 (65%), Gaps = 1/261 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  ++P L+E+P DAE+ SHKL+LR GM+ + + G+Y +LPLG K +D +  ++REE
Sbjct: 1   MRFSSCYIPTLKESPADAEVVSHKLLLRAGMVRRLTSGLYIYLPLGLKIIDKIARVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +G  E+ +P +Q ADLW E+GR++ YGKE+LR  DRN++    GPTHEEV+TD+ R 
Sbjct: 61  INASGFQELLMPMVQPADLWKETGRWEHYGKELLRFKDRNERDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSFD    G++ SY  M+ +
Sbjct: 121 EVRSYRQLPVRLYQIQSKFRDEIRPRFGLMRGREFMMKDGYSFDADIAGAEESYKLMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGLK   + A++G IGG+ SHEF+VLADTGE  +    D  D+    E  +  
Sbjct: 181 YTRIFKRLGLKFRAVEADTGSIGGNFSHEFMVLADTGEDTIAFCHDC-DYAANVERAEVV 239

Query: 241 DIISLNSIVEQWTAPYAATSD 261
                 +       P     D
Sbjct: 240 WKGEACTEACAGACPDYEKVD 260



 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 74/180 (41%), Positives = 100/180 (55%), Gaps = 2/180 (1%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A   A +D+      D  P         +GIEVGHIF  G KYS  M A F   +GK+ 
Sbjct: 377 DAAITAWADLRAITPEDVCPRCGGRIELTKGIEVGHIFMLGLKYSESMHAAFLDENGKEK 436

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MG YGIG  RV AA IE +HD  GI++P  VAPF+  L+N+   +       E+IYA
Sbjct: 437 LMIMGCYGIGVSRVAAAAIEQNHDENGIVFPPPVAPFECILLNLDPRNAEVTAKAEEIYA 496

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L  +G DV  DD  E+ G +F  ADLLG P+Q++VG K ++   VE K R +G + ++S
Sbjct: 497 MLRDMGVDVLLDDREERPGVKFKDADLLGAPMQLVVGGKGLARGIVECKDRRSGEKGELS 556


>gi|325478873|gb|EGC81983.1| threonine--tRNA ligase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 640

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 148/442 (33%), Gaps = 42/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  + +E   RD      ++ L     H+   G   + P G   ++ +     +  N  G
Sbjct: 232 YEELQKEIEKRDHRKIGREMNLFA--FHEEGPGFPFFHPNGMILMNELLGWWTDVLNENG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +D Y + M    + + +A    P +       + ++  SY
Sbjct: 290 YGEIKTPLILNEALWHRSGHWDHYKENM-YFTEIDGEAYAVKPMNCPGSVLTYAANQHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R EL     G+ R R F   DA+ +  TP   K    +M      +
Sbjct: 349 RDLPIRLAEYGQVHRHELSGTLHGLFRVRTFTQDDAHVYC-TPNQIKEEVYRMIDLADLL 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K       + P                           DF         ++   
Sbjct: 408 YSTFGFKYTI-ELSTRP-----------------DDFMGDIKDWDFAEEQLKKALEERGI 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D H   L D+     +     ++    F     +      T+  
Sbjct: 450 EYEINPGDGAFYGPKIDFH---LLDAAKREWQCGTIQLD----FQLPQNFD----LTYID 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G+      +    +G++     V+     G+  +W           + I        D
Sbjct: 499 ENGEKQRPVMLHRALLGSIERFIGVLTEHFAGRFPLW------LNPQQVEIIPVSDKFID 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++  ++ + G  V  D   E +G +   A L+     ++VG K  +  K+ +++R  
Sbjct: 553 YAEELKQKIKEAGFRVNIDYRNEGVGYKIRQAQLMRTNYMLVVGEKEETSGKLTVRNRDG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
               D+SL+E I   S   ++ 
Sbjct: 613 EETPDVSLDEFIEKISEEKASK 634


>gi|313201958|ref|YP_004040616.1| prolyl-tRNA synthetase [Methylovorus sp. MP688]
 gi|312441274|gb|ADQ85380.1| prolyl-tRNA synthetase [Methylovorus sp. MP688]
          Length = 574

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 116/233 (49%), Positives = 169/233 (72%), Gaps = 1/233 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+   +E P++AE+ SH+LMLR G+I +   G+Y+W+PLG + L  V  ++R+E
Sbjct: 1   MRASQFFIATQKEAPQEAELPSHRLMLRAGLIKRLGSGLYTWMPLGLRVLRKVETVVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q A+LW E+GR+D +G +ML++ DR++++  +GPTHEEV+TD+ R 
Sbjct: 61  MNKAGALELLMPAVQPAELWQETGRWDVFGPQMLKITDRHERSFCFGPTHEEVITDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF  + E  + +Y  M+ +
Sbjct: 121 EIKSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHTSLESLEATYATMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y  +F+RLGLK   +RA++G IGGD SHEF VLAD+GE  +       D+   
Sbjct: 181 YSNVFNRLGLKFRAVRADTGAIGGDGSHEFHVLADSGEDALAYC-PASDYAAN 232



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/188 (35%), Positives = 108/188 (57%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K V    RGIEVGHIF   TKY+  M+AT++  +G+   ++MG 
Sbjct: 387 VADIRNVINGDPSPDGKGVLELCRGIEVGHIFQLRTKYAEAMNATYQAENGELKIMEMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE  +D +GII+P ++APF +++  I        +DA   +YA L + 
Sbjct: 447 YGIGVSRIVGAAIEQGNDARGIIFPAAMAPFSVAIAPIGMDRSDAVKDATLALYAELQQA 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD GE+ G  FA  +L+G P +V++G + + + +VE + R     + ++L E++
Sbjct: 507 GIDVLLDDRGERPGVMFADLELIGIPHRVVIGDRGLKEGQVEYQARTDEQAQSVALSEIV 566

Query: 436 NYASHRFS 443
           +      +
Sbjct: 567 SKLKQALA 574


>gi|167624874|ref|YP_001675168.1| prolyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
 gi|189083514|sp|B0TNJ5|SYP_SHEHH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167354896|gb|ABZ77509.1| prolyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
          Length = 570

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 164/240 (68%), Gaps = 1/240 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YSWLP G + L  + AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVVSHQLMLRAGMIRRNASGLYSWLPTGLRVLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G++E+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 61  MNKAGSVEILMPMVQPADLWVETGRFEKFGPELLRFQDRHNRDFVLGPTHEEVITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF +  E    +Y  MF +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHIDQETMDETYEAMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  RLGL   P+ A++G IGG +SHEF VLA++GE  +       D+    E  +  
Sbjct: 181 YNNILTRLGLSFRPVMADTGSIGGSMSHEFHVLANSGEDLIAY-STESDYAANIEKCEAP 239



 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 110/190 (57%), Gaps = 3/190 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P AA  D+ N    +  P  K V A  RGIEVGHIF  GT YS  M+A     +GK   +
Sbjct: 379 PEAAAFDLRNIIEGEPSPCGKGVIALLRGIEVGHIFQLGTNYSEAMNANVLDQNGKSKTL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE ++D +GIIWPD++APF + ++ +        +D  E++Y  
Sbjct: 439 LMGCYGVGVSRMVAAAIEQNNDDRGIIWPDAIAPFTVGILPMNMHKSHRVKDIAEQLYQD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +V +DD  E+ G  FA  +L+G P  V++G + + +   E K+R TG ++D+ L
Sbjct: 499 LNDAGIEVMFDDRKERPGVMFADMELIGIPHVVVIGDRNIDNGMFEYKNRRTGEKQDIPL 558

Query: 432 EEVINYASHR 441
            +++ +   +
Sbjct: 559 GDIVEFLKAQ 568


>gi|296132879|ref|YP_003640126.1| prolyl-tRNA synthetase [Thermincola sp. JR]
 gi|296031457|gb|ADG82225.1| prolyl-tRNA synthetase [Thermincola potens JR]
          Length = 579

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 120/265 (45%), Positives = 172/265 (64%), Gaps = 5/265 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+   P L+E P +AE+ SH LMLR G I + + GIY++LPL  + +  V+ I+REE
Sbjct: 1   MRASEILAPTLREVPAEAEVISHILMLRAGFIRKSASGIYTYLPLANRVIKKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q A+LW ESGR+D YG E+ RL DR+ ++   GPTHEE++TD+ R+
Sbjct: 61  MDRKGGQELILPIMQPAELWQESGRWDVYGDELFRLKDRHGRSFALGPTHEEIITDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P   YQIQ K+RDE RPRFG+MR REF+MKD YSFD    G   SYNKMF +
Sbjct: 121 EIRSYKQMPMLLYQIQNKYRDERRPRFGLMRGREFIMKDLYSFDRDEAGLDESYNKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y R+F R GLK  P+ A+SG IGG  +HEF+VLA++GE  +    +  ++    E  +  
Sbjct: 181 YTRVFSRCGLKFRPVEADSGAIGGSSTHEFMVLAESGEAAIVYCTEC-EYAANVEKAEAC 239

Query: 241 DIISLNSI----VEQWTAPYAATSD 261
            + ++  +    +E+   P A T +
Sbjct: 240 SVDTVTPMDMLPMEEVATPNARTIE 264



 Score =  183 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 76/188 (40%), Positives = 112/188 (59%), Gaps = 2/188 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+   +  +  P        ARGIEVG IF  GTKYS  + A F   +GK+ Y+ MG 
Sbjct: 380 EADIRIVQAGEPCPRCNGTLAMARGIEVGQIFKLGTKYSKALGAKFLDENGKEQYIVMGC 439

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R VAA IE +HD  GIIWP S+APF++ ++ + A      +  E+IY++L + G
Sbjct: 440 YGIGITRTVAAAIEQNHDQDGIIWPMSIAPFQVIVVPVSAKSSEQVELAERIYSQLLEAG 499

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G +F  ADL+G+P++V VG+K V + +VE++ R TG   D+ +EEV+ 
Sbjct: 500 IEVIIDDRNERPGVKFKDADLIGYPIRVTVGNKAVDEGRVEVRLRKTGDTRDLPVEEVVT 559

Query: 437 YASHRFSN 444
           Y  +    
Sbjct: 560 YVKNLVDE 567


>gi|217969648|ref|YP_002354882.1| prolyl-tRNA synthetase [Thauera sp. MZ1T]
 gi|217506975|gb|ACK53986.1| prolyl-tRNA synthetase [Thauera sp. MZ1T]
          Length = 582

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 127/235 (54%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DAE+ S KLMLR GMI + + GIYS++P+G +A+  V AI+REE
Sbjct: 1   MRASQFHLFTLKEAPSDAEVVSQKLMLRAGMIRKVAAGIYSYMPMGLRAIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW E+GR+D  G E+LR  DR+++     PT EEV+TDI R 
Sbjct: 61  MDRAGAMELIMPMVQPAELWDETGRWDKMGDELLRFKDRHERDFALQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQIQ KFRDE RPRFGVMR REF MKDAYSFD + E +  SY+ MF +
Sbjct: 121 ELKSYRQLPKNFYQIQTKFRDERRPRFGVMRGREFTMKDAYSFDRSEEAAGRSYDIMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL+   + A++G IGGD SHEF V+ADTGE  +    D  D+    E
Sbjct: 181 YKRIFDRLGLEYRAVAADTGAIGGDRSHEFQVIADTGEDAIVYCPD-SDYAANIE 234



 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 69/188 (36%), Positives = 104/188 (55%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ + V    RGIEVGH+FY GTKYS  M+ATF   DGK  + +MG 
Sbjct: 393 VADLRNVVEGDPSPDGRGVLAIQRGIEVGHVFYLGTKYSKAMNATFLDEDGKPKHFEMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R++ A IE +HD +GI+WP ++APF++ +  +     Q  RD  +K+Y  L   
Sbjct: 453 YGIGVTRILGAAIEQNHDARGIVWPRAIAPFEVVVCPVGWGKSQAVRDEAQKLYDALVAT 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G D   DD  E+ G  FA  +L+G P +V +G + + +  +E + R       +   EV+
Sbjct: 513 GVDAILDDRDERPGVMFADWELIGVPHRVTIGDRGLKEGVIEYQGRRDAEAAKLPAGEVL 572

Query: 436 NYASHRFS 443
            +   R +
Sbjct: 573 GHVLERLN 580


>gi|251793646|ref|YP_003008376.1| prolyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
 gi|247535043|gb|ACS98289.1| hypothetical protein NT05HA_1971 [Aggregatibacter aphrophilus
           NJ8700]
          Length = 571

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 122/243 (50%), Positives = 161/243 (66%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY    L+E P +A + SH+LMLR GMI   + G+Y+WLP G + L  V  IIR+E
Sbjct: 1   MRTSKYLFSTLKETPAEAAVVSHQLMLRAGMIRPLASGLYNWLPTGLRVLKKVENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKSGAIEVEMPVVQPAELWQESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 EVSSYRQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHTSKESLQETYDVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA++GE  V       D+    E  +  
Sbjct: 181 YSNIFSRLGLDFRAVQADTGSIGGSASHEFQVLANSGEDDVIF-STESDYAANIELAEAV 239

Query: 241 DII 243
            I 
Sbjct: 240 AIG 242



 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNINWERDVALPKVADIRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGDKYSKAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
           +AT +G DG+   + MG YGIG  RVVAA IE  HD +  I   D +APF ++++ +   
Sbjct: 424 NATVQGEDGRPMVLTMGCYGIGVTRVVAAAIEQHHDERGIIWPCDEMAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  ++  E +Y  L   G +V +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQEFAEDLYRTLLAQGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++++   +  
Sbjct: 544 EYKNRRTGEKQMIAKDQLLDFLKSQVK 570


>gi|85375301|ref|YP_459363.1| threonyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
 gi|123293655|sp|Q2N6X5|SYT_ERYLH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84788384|gb|ABC64566.1| threonyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
          Length = 672

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 81/455 (17%), Positives = 151/455 (33%), Gaps = 49/455 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++    L  L+E   RD      ++ L    + + + G   W P G K    + A +R +
Sbjct: 241 KQLNAHLHRLEEAAKRDHRKLGREMDLF--HLQEEAHGSVFWHPQGYKIWRELEAYMRRK 298

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-------------RNDKAMIYG 107
            +  G  E+  P +  A  W +SG +  Y + M  + D             ++   M   
Sbjct: 299 MDGAGYREIKTPQVMDARQWEQSGHWGKYRENMFVIPDEIPNTEDEGELVSKDADWMALK 358

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLT 166
           P +      +F+  I SYR+LP    ++    R+E      G+MR R+F   DA+ F   
Sbjct: 359 PMNCPAHVLVFKQGITSYRDLPIRLGEMGCCHRNEPHGALHGLMRVRQFTQDDAHIFCTE 418

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +  +    + F       +R       ++    P     S E    A+           
Sbjct: 419 DQVVEE--VRAFCKLADEVYRDFGFDYDVKLALRPEQRFGSEEDWDKAEQELRDAVAEAG 476

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             +     E             +    A YA   + H   L D++    +V     +   
Sbjct: 477 MANDDYGWEE------------LPGEGAFYAPKLEWH---LTDAIGRTWQVGTIQGDRVL 521

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                      + AT+ G DG  H    +     G+      ++     G+  +W     
Sbjct: 522 P--------ERLDATYVGEDGGKHRPVMLHRAIFGSYERFIGILIEHFAGRLPVWLAPTQ 573

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
               +++             ++  A+L   G  V  D   E+I  +     L   P  ++
Sbjct: 574 AVVATIV------SDADGYAKEAVAKLEAAGIRVDGDLRNEKINFKVREHSLAKVPHLLV 627

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           VG +   +  V ++      ++ MSL++ I     
Sbjct: 628 VGKREAEEGTVAVRTLGEKEQQVMSLDDAIAMLKD 662


>gi|154249367|ref|YP_001410192.1| prolyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
 gi|171769336|sp|A7HKV2|SYP_FERNB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|154153303|gb|ABS60535.1| prolyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
          Length = 574

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 107/261 (40%), Positives = 161/261 (61%), Gaps = 3/261 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+++ P L+E P DAE+ S +L+ R G I + + G+Y++LPLG++ L  +  I+REE
Sbjct: 1   MRFSQFYAPTLKEAPADAEVPSQELLTRAGFIRKIAAGVYTYLPLGRRVLLKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +Q A+LW +SGR++ YG EM++L DR+ +    GPTHEE++T + ++
Sbjct: 61  MDNIGANEILMPIIQPAELWKQSGRWEDYGPEMMKLKDRHGRDFTLGPTHEELVTFLVQN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T YQ+  K+RDE+RPRFGV+R+REF+MKD YSF    E    +Y     +
Sbjct: 121 ELNSYKQLPITLYQMANKYRDEIRPRFGVLRAREFIMKDGYSFHSDWESLDETYKAHRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  R+GLK   + A SG IGG+ SHEF+  ADTGE+ V   +    +    E   + 
Sbjct: 181 YSNIMERIGLKYAVVEASSGAIGGNESHEFVAFADTGESNVLFCECG--YAGNDERVPYT 238

Query: 241 -DIISLNSIVEQWTAPYAATS 260
            +II  N  ++     Y    
Sbjct: 239 GEIIYDNEELKGMEKVYTPNV 259



 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 69/193 (35%), Positives = 101/193 (52%), Gaps = 7/193 (3%)

Query: 260 SDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   +  D  P       + +GIE+GHIF  GTKYS  M + +   DG+     MG Y
Sbjct: 380 ADLIVTREGDPCPVCGKPLNAKKGIELGHIFKLGTKYSEAMGSKYMDKDGQLKPFIMGCY 439

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G G  R + A++E  HD KGIIWP SVAPF + +  + ++++      E++Y  L + G 
Sbjct: 440 GWGVSRTLGAIVEQLHDEKGIIWPLSVAPFAVVITPV-SNNENLMKFSEELYNFLVEKGE 498

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS--LEEVI 435
           +V  DD     G +F  ADL+G P +V VG K +S+  VEIK R TG +  +   LEE+ 
Sbjct: 499 EVLLDDRNISPGMKFNDADLIGIPFRVTVG-KALSEGMVEIKWR-TGQQFKVKATLEEIY 556

Query: 436 NYASHRFSNNRPV 448
            +         P 
Sbjct: 557 EFLQKSKQEYDPH 569


>gi|87309081|ref|ZP_01091218.1| threonyl-tRNA synthetase [Blastopirellula marina DSM 3645]
 gi|87288072|gb|EAQ79969.1| threonyl-tRNA synthetase [Blastopirellula marina DSM 3645]
          Length = 668

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 145/442 (32%), Gaps = 39/442 (8%)

Query: 11  LQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           L+E  R D      +L L    I+    +G+  WLP G      +   + E+  +     
Sbjct: 238 LEEAKRRDHRTLGKQLELFA--INPLVGQGLILWLPKGAVVRQQLTDFVSEQLKKHEYES 295

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           +  P +   DL+  SG Y  Y           +D+  +  P +      I+++  +SYR 
Sbjct: 296 VFTPNIGKVDLYKTSGHYPYYKDSQFPPIHVSDDEEYLLKPMNCPHHIMIYKNRPRSYRE 355

Query: 128 LPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP    +    +R E      G+ R R F   DA+ F +  E  +  + K       + +
Sbjct: 356 LPVRLSEFGTVYRYEQSGELNGMTRVRGFCQDDAHIFCM-EEQVEEEFRKCIEMTQYVLN 414

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
            LGL    +R                  D    +   +    D    S  +   ++    
Sbjct: 415 SLGLTDYRVRL--------------GFRDPDNGKYVGNSKVWDRAEQSLVSVCKNMGIDA 460

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
                  A Y   +D     + D L    ++    ++           +   +  + GAD
Sbjct: 461 VAEAGEAAFYGPKADF---VVNDCLGREWQLGTVQLDYNLP------STERFALEYVGAD 511

Query: 307 GKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + H   M          R +  +IE       +          +         Q   + 
Sbjct: 512 NQMHRPVMIHRAPFGSLERFMGVLIEHFAGAFPLWLAPEQVRVLVV-------SQKFEEY 564

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+ A L + G  V  D   E+IGS+   A L   P   ++G + +    V ++ R+ G
Sbjct: 565 ARKVEAELKQAGFRVKGDYRPEKIGSKIRDAQLELIPYMFVIGGREMETESVAVRDRIDG 624

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               M + E I+      +  +
Sbjct: 625 DLGSMKVAEAIDKLKQEVAERK 646


>gi|257463827|ref|ZP_05628214.1| threonyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|317061364|ref|ZP_07925849.1| threonyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|313687040|gb|EFS23875.1| threonyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 637

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 157/439 (35%), Gaps = 42/439 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL +++E   RD      +L L    + ++  G   +LP G    + +  + R E  + G
Sbjct: 230 FLKLMEEAEKRDHRKLGKELELF--FLSEYGPGFPFFLPKGMVLRNTLIDLWRAEHEKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +++  P + + +LW  SG + +Y + M   +  +D      P +       F+    SY
Sbjct: 288 YVQIDTPIMLNRELWEISGHWFNYRENMYTSS-IDDVDFAIKPMNCPGGVLAFKYQQHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++    R E      G+ R R F   D++ F +T E  +     +     + 
Sbjct: 347 RDLPARVAELGKVHRHEFSGALHGLFRVRAFTQDDSHIF-MTEEQIESEIIGVVNLIDKF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + +L      +   + P     + E                   +    +       +  
Sbjct: 406 YSKLFGFQYSIELSTRPEKSIGTDE-----------------IWEKAEAALAGALHHLGR 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D    K+ D++    +     ++    F    ++      T+ G
Sbjct: 449 EFKINEGDGAFYGPKLDF---KIKDAIGRTWQCGTIQLD----FNLPERFD----VTYVG 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +     G++     ++   + G   +W   V    +++      +  C  
Sbjct: 498 EDGEKHRPVMIHRVIYGSIERFIGILIEHYAGAFPMWLAPVQIKVLTI------NDDCVS 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRL 422
             ++I  +L + G     DD  E IG +   A+     P+QVI+G   +   +V I+   
Sbjct: 552 YAKEIVEKLKEQGIRAELDDRSESIGYKIREANGRYKIPMQVIIGKNEIEKKEVNIRRFG 611

Query: 423 TGIREDMSLEEVINYASHR 441
           +  +E M L   +      
Sbjct: 612 SQAQESMDLNAFLAMVKEE 630


>gi|56965736|ref|YP_177470.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|56911982|dbj|BAD66509.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 637

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 150/442 (33%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           YF  + +   R+      +L L   M  + + G+  +L  GQ   + + + +R  Q +  
Sbjct: 233 YFAFLEEAEKRNHRKLGKELELF--MFSEEAPGMPFYLANGQIIRNELESFLRNLQAKYD 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG +D Y + M      +++     P +      IF++ + SY
Sbjct: 291 YKEVRTPIMMNQRLWEQSGHWDHYKENM-YFTQVDEQQFALKPMNCPGHMLIFKNGLHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G++R R F   DA+ F  TP+  +            +
Sbjct: 350 RDLPIRMAEFGQVHRHEFSGALNGLLRVRTFCQDDAHIFV-TPQQIEEEITLALKIIDHV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K       + P                      S+   +    +       +  
Sbjct: 409 YQVFGFKYEI-ELSTRP-----------------DDFMGSEHLWEQAETALENVLQKLNY 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D+H   + D++  + + +   ++    F    K+      T+  
Sbjct: 451 AYKVNEGDGAFYGPKIDIH---IKDAIQRSHQCATVQLD----FQLPEKFD----LTYID 499

Query: 305 ADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              +      +     G++     ++     G   +W           + I     V  D
Sbjct: 500 KQNEKKRPVVIHRAVFGSIDRFLGILIEHFAGAFPVW------LAPVQVQIVPVSHVHLD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C  I + L +VG  V  D+  E++G +   A +   P  +++G   + +  V ++    
Sbjct: 554 YCLTIQSELKQVGVRVNIDESDEKLGYKIRKAQMQKIPCTIVLGDNELKEETVTVRQYGK 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              E +  E        +    
Sbjct: 614 PETERVPFEYFKEKLVRQIKER 635


>gi|323344262|ref|ZP_08084488.1| threonine--tRNA ligase [Prevotella oralis ATCC 33269]
 gi|323094991|gb|EFZ37566.1| threonine--tRNA ligase [Prevotella oralis ATCC 33269]
          Length = 654

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 153/444 (34%), Gaps = 36/444 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L T    +  KG+  WLP G +    +  ++R+ Q R 
Sbjct: 232 EYLVMLEEAKKRDHRKIGKEMELFT-FSERVGKGLPIWLPKGTELRLRLQDMLRKIQKRF 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G  E+  P + S +L+V SG Y  YGK+  +       D+  +  P +     ++F    
Sbjct: 291 GYQEVITPHIGSKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEVFAWKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    +R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 351 RSYKDLPLRIAEFGTVYRYEKSGELHGLTRVRSFTQDDAHIFCRPDQVKSE-FLRVMDII 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F      +   +                       +   + +  +    +      +
Sbjct: 410 QTVFKIFNFDNFEAQISLRD-------------PKDREKYIGADEVWEESEQAIKEACAE 456

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I     A Y    D     + D++    ++    ++      F           
Sbjct: 457 KGLDAKIAYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLPQRF--------KLE 505

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D  K   V +     G++    AV+     G   +W           + I    + 
Sbjct: 506 YTDEDNVKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW------LTPDQVAILPISEK 559

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+       G     DD  E+IG +    +L+  P  VIVG K  +D  V ++ 
Sbjct: 560 YNDYAKKVSKYFDAQGVRATIDDRNEKIGRKIRDNELMRVPYMVIVGEKEAADGLVSMRK 619

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           +  G +  M++EE     +   + 
Sbjct: 620 QGGGEQATMTMEEFAKRINGEVAE 643


>gi|117925064|ref|YP_865681.1| prolyl-tRNA synthetase [Magnetococcus sp. MC-1]
 gi|152112926|sp|A0L8I2|SYP_MAGSM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|117608820|gb|ABK44275.1| prolyl-tRNA synthetase [Magnetococcus sp. MC-1]
          Length = 576

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 123/238 (51%), Positives = 163/238 (68%), Gaps = 1/238 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +A++ SHKLMLR G+I Q   GIY+WLP+G K L  V  I+R+E
Sbjct: 1   MRFSQTLIPTLKEEPSEAQVISHKLMLRAGLIRQLGAGIYTWLPMGLKVLRKVETIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P++Q A+LW ESGR+  YGKE+LR+ DR++++  YGPTHEEV++D+ R 
Sbjct: 61  MDRAGAQEVLMPSIQPAELWEESGRWKMYGKELLRITDRHNRSFCYGPTHEEVISDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFG+MR REFLMKDAYSFD+       SY  MF +
Sbjct: 121 EIHSYKQLPANFYQIQTKFRDEVRPRFGIMRGREFLMKDAYSFDIDEAALDKSYRLMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           Y +IF+RL LK  P+ A++G IGG  SHEF VLA +GE  +        +    E   
Sbjct: 181 YNKIFNRLDLKFRPVEADTGAIGGASSHEFHVLAQSGEDVIASCTHCQ-YAANLEKAF 237



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/195 (35%), Positives = 106/195 (54%), Gaps = 3/195 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           P     D+ N +  D  P         +RGIEVGH+F  G KYS  M       DGK+  
Sbjct: 380 PKPEFVDLRNVEEGDGCPRCGPGSMELSRGIEVGHVFKLGYKYSEAMGVKVLDEDGKEKP 439

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + MG YGIG  R+VAA IE +HD  GIIWP ++APF++ ++ +  ++    +  E+I A+
Sbjct: 440 LIMGCYGIGVSRIVAAAIEQNHDENGIIWPLAIAPFEVEVVVMNPNESDAMEKAEEITAQ 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L     +V  DD  E+ GS+F  ADLLG P +V+VG +   +   E+K+R +G+ E + +
Sbjct: 500 LQAGQLEVLLDDRDERAGSKFKDADLLGAPYRVLVGGRAFKEGVCEVKNRRSGVVEKIPV 559

Query: 432 EEVINYASHRFSNNR 446
           E V+       +  +
Sbjct: 560 ESVVETLLQWLAQEK 574


>gi|225852573|ref|YP_002732806.1| threonyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|256263936|ref|ZP_05466468.1| threonyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|254783511|sp|C0RJ44|SYT_BRUMB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225640938|gb|ACO00852.1| threonyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|263094080|gb|EEZ18002.1| threonyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
          Length = 658

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 152/445 (34%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 233 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 HGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLQIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 411 -DHILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 457

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 458 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 508

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 509 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 562

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 563 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 620

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 621 NMRRLGSRDQESMTLDEAIARLCEE 645


>gi|157376262|ref|YP_001474862.1| prolyl-tRNA synthetase [Shewanella sediminis HAW-EB3]
 gi|157318636|gb|ABV37734.1| prolyl-tRNA synthetase [Shewanella sediminis HAW-EB3]
          Length = 584

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 124/240 (51%), Positives = 164/240 (68%), Gaps = 1/240 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P DAE+ SH+LMLR GMI +++ G+YSWLP G + L  V AI+REE
Sbjct: 16  MRVSKYLLSTQKETPADAEVISHQLMLRAGMIRRNASGLYSWLPTGLRVLRKVEAIVREE 75

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G++E+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 76  MNKAGSVEILMPMVQPADLWVETGRFEKFGPELLRFQDRHNRDFVLGPTHEEVITDIVRK 135

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E    +Y  MF +
Sbjct: 136 EVNSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDQETMDETYETMFQA 195

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  RLGL   P+ A++G IGG +SHEF VLA++GE  +       D+    E  +  
Sbjct: 196 YNNILTRLGLAFRPVMADTGSIGGSMSHEFHVLANSGEDLIAY-STESDYAANIEKAEAP 254



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/203 (33%), Positives = 110/203 (54%), Gaps = 3/203 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I  +   P A   D+ N    ++ P  +   A  RGIEVGHIF  G  YS  M
Sbjct: 380 DDKHYFGINWERDLPEAEAFDLRNIIEGEASPCGQGTIALLRGIEVGHIFQLGKNYSEAM 439

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +A     +GK   + MG YG+G  R+VAA IE +HD +GI WPD++APF++ ++ +    
Sbjct: 440 NANVLDHNGKAQTLLMGCYGVGVSRMVAAAIEQNHDDRGITWPDAIAPFRVGILPMNMHK 499

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +D  EK+Y  +   G +V +DD  E+ G  FA  +L+G P  V++G + + +   E
Sbjct: 500 SHRVKDMAEKLYQDMQDAGFEVLFDDRKERAGVMFADMELVGLPHVVVIGDRNIDNGVFE 559

Query: 418 IKHRLTGIREDMSLEEVINYASH 440
            K+R TG ++++  +++I++   
Sbjct: 560 YKNRRTGEKQEIPFDQIIDFLKS 582


>gi|88705599|ref|ZP_01103309.1| prolyl-tRNA synthetase [Congregibacter litoralis KT71]
 gi|88700112|gb|EAQ97221.1| prolyl-tRNA synthetase [Congregibacter litoralis KT71]
          Length = 571

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 121/241 (50%), Positives = 164/241 (68%), Gaps = 1/241 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ +   +E P DAEI SH+LMLR G+I + S G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MRSSEFLITTHKETPADAEIISHRLMLRAGLIRKLSSGLYTWMPMGLRVLRKVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA+E+++P +Q A+LW ESGR++ YG E+LR+ DR+ +    GPTHEEV+TDI R+
Sbjct: 61  MDASGALELAMPMVQPAELWEESGRWEQYGPELLRIQDRHQRDFCLGPTHEEVITDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K RDE+RPRFGVMR+REFLMKDAYSF       + +Y  M  +
Sbjct: 121 EISSYKQLPLNLYQIQNKVRDEIRPRFGVMRAREFLMKDAYSFHADATSLEATYGVMHGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A+SG IGG+ SHEF VLAD+GE  +  S    D+    E  +  
Sbjct: 181 YTRIFERLGLDFRPVMADSGSIGGNTSHEFHVLADSGEDAIAFSD-GSDYAANIERAETV 239

Query: 241 D 241
           D
Sbjct: 240 D 240



 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/188 (33%), Positives = 110/188 (58%), Gaps = 3/188 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M+A      G++  + MG Y
Sbjct: 382 ADLRNVVAGDPSPDGKGQLQIRRGIEVGHIFQLGTKYSEAMNARVLDETGRNVTLSMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVG 376
           GIG  R+VAA IE +HD +GIIWP ++APF+++++ +         +A E ++     +G
Sbjct: 442 GIGVSRIVAAAIEQNHDDRGIIWPSAMAPFQLAIVPLNMHKSAAVAEAAETLHQECLALG 501

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G +FA  +LLG P ++++G + +++ ++E + R     + ++L E ++
Sbjct: 502 IEVLMDDRNERPGVKFADMELLGIPHRIVIGDRSLAEGEIEYQGRRDADSQRVALTEAMS 561

Query: 437 YASHRFSN 444
           + + + ++
Sbjct: 562 FITAQLTS 569


>gi|311103966|ref|YP_003976819.1| prolyl-tRNA synthetase [Achromobacter xylosoxidans A8]
 gi|310758655|gb|ADP14104.1| prolyl-tRNA synthetase [Achromobacter xylosoxidans A8]
          Length = 575

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 124/235 (52%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y +  L+E P +AE+ASH+LM R GMI + + GIY+++PLG K +  V AI+REE
Sbjct: 1   MRASNYHINTLKEAPSEAEVASHQLMTRAGMIRKLAGGIYTYMPLGLKVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q A+LW ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAIELLMPVVQPAELWQESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G++ SY+ M+ +
Sbjct: 121 EIHSYRQLPVNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGAQASYDTMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y+RIF RLGL    + A++G IGG  SHEF V+ADTGE  +  + D  D+    E
Sbjct: 181 YMRIFGRLGLGFRAVAADTGSIGGTRSHEFQVIADTGEDLLVYNADT-DYAANIE 234



 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/189 (36%), Positives = 101/189 (53%), Gaps = 3/189 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGH+FY G KYS  + ATF    GK   ++MG 
Sbjct: 386 VADLRNVVAGDPSPDGKGTLSIQRGIEVGHVFYLGKKYSEALKATFLDETGKPAVLEMGC 445

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE +HD +GIIWP ++APF++ +  +     +  RD  +K+Y  L   
Sbjct: 446 YGIGVTRIVGAAIEQNHDARGIIWPRAIAPFEVVICPVGWGKSETVRDTAQKLYESLLAR 505

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD   + G  FA  +L+G PL+V VG + ++D  VE++ R       + +E  +
Sbjct: 506 GVDVILDDRDARPGVMFAEWELIGAPLRVTVGERGLNDGVVELQARRETEAAKIPVESAL 565

Query: 436 NYASHRFSN 444
                +   
Sbjct: 566 EAVLTKLDT 574


>gi|238759923|ref|ZP_04621077.1| Prolyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
 gi|238701830|gb|EEP94393.1| Prolyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
          Length = 572

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 122/235 (51%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L   +E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTQKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  F+QIQ KFRDE+RPRFGVMR+REFLMKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EINSYKQLPLNFFQIQTKFRDEVRPRFGVMRAREFLMKDAYSFHTTQESLQETYDAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+ L    + A++G IGG  SHEF VLA++GE  +       D+    E
Sbjct: 181 YSKIFARMDLNFRAVLADTGSIGGSASHEFQVLAESGEDDIVF-STESDYAANIE 234



 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      I  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 366 DDKHYFGINWERDLPLPQVADLRNVVEGDISPDGKGTLQIKRGIEVGHIFQLGTKYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            AT +G DG++  + MG YGIG  RVVAA IE ++D +GIIWPD++APF+++++ +  H 
Sbjct: 426 KATVQGEDGRNQVMTMGCYGIGVSRVVAAAIEQNYDERGIIWPDAIAPFQVAILPMNMHK 485

Query: 359 Q-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               ++  E++YA L   G DV  DD  E+ G  FA  +L+G P  +++G + +   +VE
Sbjct: 486 SFRVKELAEELYATLRSHGIDVILDDRKERPGVMFADMELIGVPHNIVIGDRNLDSEEVE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G ++ +   E+I +   +  
Sbjct: 546 YKNRRIGEKQMIKTSEIIEFLLSQIK 571


>gi|118602380|ref|YP_903595.1| prolyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|152016598|sp|A1AW17|SYP_RUTMC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118567319|gb|ABL02124.1| prolyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 559

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 117/239 (48%), Positives = 162/239 (67%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +K  +P  +E P DA+I SH+LM+R G+I + + G+YS+LP+G + L  V  IIR+E
Sbjct: 1   MKTTKLLIPTQKEVPNDAQIISHQLMIRAGLISKLASGLYSYLPMGVRVLHKVENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA E+ +P +Q A+LW  SGR+D YG E+LR  DR+ +    GPTHEEV+T +   
Sbjct: 61  MNKSGAQEVFMPVVQPAELWKTSGRWDKYGTELLRFTDRHQREFCLGPTHEEVITHLAAQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF L     + +Y+ M+ +
Sbjct: 121 YLRSYKQLPMNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHLDQYSLQQTYDVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y  IF RL L    + A+SG IGGD SHEF VLA++GE  + C  D  ++    E   F
Sbjct: 181 YCNIFDRLSLDYHAVLADSGSIGGDASHEFHVLAESGEDTI-CFSDESNYAANIEKVSF 238



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 3/194 (1%)

Query: 252 WTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           W       +D+ +    D  P+ K   +  RGIEVGHIF  GTKYS  M     G  GK 
Sbjct: 366 WQGIEFVDADLRSAVEGDYSPDGKGKLIIKRGIEVGHIFQLGTKYSSAMKVNVIGESGKA 425

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKI 368
               MG YGIG  R++AA IE ++D KGII+P ++APF++ ++ I        +   +K+
Sbjct: 426 ITTTMGCYGIGVTRIIAASIEQNYDDKGIIFPQAIAPFQVVIVPINYNKSTRVKALSDKL 485

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y +    G +V  DD  E+ G  FA ++LLG P ++++      +  VE K R    +  
Sbjct: 486 YQQFIGAGIEVLLDDRKERAGIMFADSELLGIPHRMVISDTHADNGNVEYKARDKIDKMQ 545

Query: 429 MSLEEVINYASHRF 442
           M  ++ +++   + 
Sbjct: 546 MKFDDALSFIQFKL 559


>gi|67920215|ref|ZP_00513735.1| Threonyl-tRNA synthetase, class IIa [Crocosphaera watsonii WH 8501]
 gi|67857699|gb|EAM52938.1| Threonyl-tRNA synthetase, class IIa [Crocosphaera watsonii WH 8501]
          Length = 642

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 155/442 (35%), Gaps = 38/442 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y     +   RD      +L L +  I +    G+  W P G K    +    R+     
Sbjct: 234 YLKQREEAKRRDHRKLGKELKLFS--IQENAGGGLVFWHPRGAKMRYVIEDYWRKAHLDG 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + + DLW  SG +D Y + M       ++A    P +       +++ + S
Sbjct: 292 GYELLYTPHVANLDLWKTSGHFDFYRENMFDSMKIEEQAYQIKPMNCPFHVLTYKNELHS 351

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR  P  + ++   +R E      G+MR R F   DA+ F L  + +      +     +
Sbjct: 352 YREFPLRWAELGTVYRYERSGVLHGLMRVRGFTQDDAHVFCLPTQIASE-ILGVLNLTEK 410

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G K   +   + P     + E                   +    +     +   
Sbjct: 411 ILSDFGFKDYEVNLSTRPDKSVGTDE-----------------GWELATQALVEALNGKG 453

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 +   A Y    D+   K+ D++    + S   ++    F    ++ +   A   
Sbjct: 454 WDYIEDKGGGAFYGPKIDI---KIKDAIGRTWQCSTIQVD----FNLPERFDMEYVAV-- 504

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               +   + +     G++     ++    +     +P  +AP ++ L+ +    +   +
Sbjct: 505 -DGSRQRPIMIHRAIFGSLERFYGILI---ENYAGDFPLWLAPIQLRLLPV---SEAQIE 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E + A L + G  V  D  GE++G Q   A+L   P+  IVG K V    + I+ R  
Sbjct: 558 YGETVVATLKQAGYRVEIDCTGERLGKQIRNAELEKIPVVAIVGKKEVETQTLSIRTRQQ 617

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M+L E+        +N 
Sbjct: 618 GDIGTMTLTELKESFKSAITNK 639


>gi|312623109|ref|YP_004024722.1| prolyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203576|gb|ADQ46903.1| prolyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 572

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 122/265 (46%), Positives = 163/265 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDKSGAQEVHMSALMPKELWEESGRWAVFGPEMFRVKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  +G   SY KM+ +
Sbjct: 121 EISSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDVDEKGLDISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++   K         +    D
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYCKACGYAANLEKAECLD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
           + I  N  +++    Y        E
Sbjct: 241 EPIENNEELKEKQEVYTPNVRTIEE 265



 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/194 (35%), Positives = 103/194 (53%), Gaps = 4/194 (2%)

Query: 256 YAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
               +D+ N    D  P+    K    RGIEVGHIF  GTKY+   +  +    G+   +
Sbjct: 375 VTKFADLRNITQDDLCPKCCSQKVTIERGIEVGHIFKLGTKYTQAFNCVYTDEKGEKKLM 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R  AA+IE  HD  GIIWP +VAP+++ ++ +   D+       +IY  L
Sbjct: 435 IMGCYGIGINRTAAAIIEQMHDEDGIIWPITVAPYEVIIVPVNVKDENQNRIAFEIYENL 494

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            + G +V  DD  E+ G +F  ADL+G P +V VG K +S+ K+EI++R T    ++ +E
Sbjct: 495 QRNGVEVLIDDRDERAGVKFKDADLIGIPFRVTVGKK-ISEGKLEIRNRRTKESFEVEIE 553

Query: 433 EVINYASHRFSNNR 446
           + I    +     +
Sbjct: 554 KAIEVVINLIREEK 567


>gi|95930704|ref|ZP_01313437.1| prolyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684]
 gi|95133184|gb|EAT14850.1| prolyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684]
          Length = 571

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 125/239 (52%), Positives = 166/239 (69%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y LP L+ENP DAEI SH+LM+R GMI + + GIY++LPLG +++  V  I+REE
Sbjct: 1   MRLTEYLLPTLKENPADAEIVSHQLMMRAGMIRKVAAGIYTYLPLGLRSIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +  A LW ESGR++ YGKE+LR+ DR D     GPTHEEV+TD+ R 
Sbjct: 61  MDRAGAMELLMPMVVPAGLWEESGRWEQYGKELLRIRDRKDTEFCLGPTHEEVITDVVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFDL   G+  +Y KM+ +
Sbjct: 121 TVRSYRQLPLNLYQIQGKFRDEIRPRFGLMRGREFIMKDAYSFDLEDAGADTAYEKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y RIF R GLK   + A++G IGG  SHEF+VLA++GE  +       D+    E    
Sbjct: 181 YQRIFKRCGLKFRAVEADTGNIGGSSSHEFMVLAESGEDAIVSCDQC-DYAANVEKAQM 238



 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 68/190 (35%), Positives = 106/190 (55%), Gaps = 2/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
             A +D+   +  D  P         RGIEVGH+F  GTKYS  + AT   A+GK+  + 
Sbjct: 377 VEAYADLRQAQAGDGCPRCDGTLQMWRGIEVGHVFKLGTKYSEALGATVLNAEGKEAPLV 436

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA IE +HD +G+I+P  +APF++ +  +   D+    A  ++Y +L 
Sbjct: 437 MGCYGIGIGRTVAAAIEQNHDDQGVIFPMPIAPFQVIITLLNPKDEQVMQAGSELYQQLM 496

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V  DD  E+ GS+F  A+L+G P++V VG++ + +   E++ RL G R  M + E
Sbjct: 497 DAGVEVLLDDRDERPGSKFKDAELIGIPIRVTVGNRALKEGAFEVQKRLEGERMMMPVAE 556

Query: 434 VINYASHRFS 443
            +++      
Sbjct: 557 TLSWLVDEVK 566


>gi|329113775|ref|ZP_08242547.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
 gi|326696901|gb|EGE48570.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
          Length = 640

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 143/439 (32%), Gaps = 40/439 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
              +   RD      ++ L        + G   W P G      + A +R  Q     +E
Sbjct: 233 RQEEAARRDHRRLGREMDLF--HFQPEAPGAVFWHPNGWTLFQTLLAYLRARQQAENYVE 290

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           ++ P +    LW  SG ++ +G+ M    +   +     P +      +FR  +KSYR+L
Sbjct: 291 INTPDIMDLSLWQASGHWEKFGENMFT-TETEGRTYALKPMNCPGGVQVFRHGLKSYRDL 349

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +     R E      G+MR R F   DA+ F  TPE  +    ++    L I+  
Sbjct: 350 PLRMAEFGKVHRFEPSGALHGLMRVRAFTQDDAHIFC-TPEQMEAETQRICHLVLSIYKD 408

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G  ++ ++    P     S E                   D    +     +      +
Sbjct: 409 FGFNNVRIKFSDRPEKRVGSDE-----------------IWDRSEDALRRGVEASGLSYT 451

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                 A Y    +     L D++  + +     +++               A + GADG
Sbjct: 452 RNPGEGAFYGPKLEF---VLRDAIGRDWQCGTVQVDLNLPQRLD--------AHYVGADG 500

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
             H    +     G++     ++   H G    W   V     ++           +  +
Sbjct: 501 DKHPPVMLHRALFGSLERFIGILLEHHAGHLPFWLAPVQVVVATIT------AAADEYAD 554

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L + G  V  D   E+I  +     L   P+ +IVG K      V I+       
Sbjct: 555 DLIKALRQRGVRVVPDLRNEKIAYKIREHSLAKVPVLLIVGKKEAQAGTVSIREYGNPDA 614

Query: 427 EDMSLEEVINYASHRFSNN 445
             +++E  IN  +    + 
Sbjct: 615 PTIAMETAINLLADASRSR 633


>gi|326409092|gb|ADZ66157.1| threonyl-tRNA synthetase [Brucella melitensis M28]
          Length = 660

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 152/445 (34%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 235 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 292

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 293 HGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 352

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 353 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLQIN 412

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 413 -DHILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 460 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 510

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 511 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 564

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 565 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 622

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 623 NMRRLGSRDQESMTLDEAIARLCEE 647


>gi|157962683|ref|YP_001502717.1| prolyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
 gi|189083515|sp|A8H6J5|SYP_SHEPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157847683|gb|ABV88182.1| prolyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
          Length = 570

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 122/240 (50%), Positives = 164/240 (68%), Gaps = 1/240 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YSWLP G + L  + AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVVSHQLMLRAGMIRRNASGLYSWLPTGLRVLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G++E+ +P +Q ADLWVE+GR++ +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 61  MNKAGSVEILMPMVQPADLWVETGRFEKFGPELLRFQDRHNRDFVLGPTHEEVITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF +  E    +Y  MF +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHIDQETMDETYEAMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  RLGL   P+ A++G IGG +SHEF VLA++GE  +       D+    E  +  
Sbjct: 181 YSNILTRLGLAFRPVMADTGSIGGSMSHEFHVLANSGEDLIAY-STESDYAANIEKCEAP 239



 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 68/190 (35%), Positives = 109/190 (57%), Gaps = 3/190 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A   D+ N    +  P  K   A  RGIEVGHIF  GT YS  M+A     +GK   +
Sbjct: 379 PEAPAFDLRNIIEGEPSPCGKGTIALLRGIEVGHIFQLGTNYSEAMNANVLDQNGKSQTL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE ++D +GIIWP+++APF + ++ +        +D  E++Y  
Sbjct: 439 LMGCYGVGVSRMVAAAIEQNNDDRGIIWPEAIAPFTVGILPMNMHKSHRVKDIAEQLYQD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +V +DD  E+ G  FA  +L+G P  V++G + + +   E K+R TG ++D+ L
Sbjct: 499 LNDAGIEVMFDDRKERPGVMFADMELIGIPHVVVIGDRNIDNGMFEYKNRRTGEKQDIPL 558

Query: 432 EEVINYASHR 441
           ++++ +   +
Sbjct: 559 DQIVEFLKAQ 568


>gi|56551661|ref|YP_162500.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|260752754|ref|YP_003225647.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|73919847|sp|Q5NPH1|SYT_ZYMMO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56543235|gb|AAV89389.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|258552117|gb|ACV75063.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 659

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 82/456 (17%), Positives = 145/456 (31%), Gaps = 52/456 (11%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K  L  L+E   RD      ++ L    + Q ++G   W P G      + A +R  
Sbjct: 233 KQLKAHLERLEEAQKRDHRRLGQEMDLF--HLQQEAQGSVFWHPNGYTIWLQLEAYLRRR 290

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYG 107
                  E+  P L  A LW  SG +  + + M  + D                  M   
Sbjct: 291 MKNANYKEVKTPQLMDAALWEASGHWGKFRENMFVVPDEIPSTDPDKPVLSGKGNLMALK 350

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLT 166
           P +      IF+  I+SYR LP    +     R+E      G+MR R+    DA+ F   
Sbjct: 351 PMNCPAHIQIFKQGIRSYRELPLRMLEFGCCHRNEAHGALHGLMRVRQLTQDDAHIFCTA 410

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +    +          I+  LG  S  ++    P       E    A+ G         
Sbjct: 411 EQIVTET-KDFVNLLDSIYRDLGFTSYAVKLSLRPELRAGDDELWDNAENGLRSALEQVG 469

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             D+                  +    A Y    + H   L D++    +     ++   
Sbjct: 470 ITDYEE----------------LPGEGAFYGPKLEFH---LTDAIGRTWQCGTLQLDYVL 510

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                      + A++   DG       +    IG       ++   H G+  +W   V 
Sbjct: 511 P--------ERLDASYVAEDGSRKRPVMLHRAIIGTFERFIGILIEHHAGRFPLWMAPVQ 562

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
               +++             E +  ++   G  V  D   E+I  +     L   P  ++
Sbjct: 563 AVVATIV------SEADSFAESVVEKMKAAGLRVVSDIRNEKINYKIREHSLTKVPNILV 616

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           VG +   + KV I+   +  +  +S++E I      
Sbjct: 617 VGKREAEEGKVAIRKLGSRDQIILSVDEAIALLLEE 652


>gi|71279026|ref|YP_269920.1| prolyl-tRNA synthetase [Colwellia psychrerythraea 34H]
 gi|114152184|sp|Q47Z50|SYP_COLP3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71144766|gb|AAZ25239.1| prolyl-tRNA synthetase [Colwellia psychrerythraea 34H]
          Length = 569

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 121/237 (51%), Positives = 157/237 (66%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P +AE+ SH+LMLR G++   + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPANAEVISHQLMLRAGLVRNLASGLYTWLPTGLRVLKKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+ +P +Q ADLW ESGR D YG E+LR+ DR+ +  + GPTHEEV+T +  +
Sbjct: 61  MQRAGGNEILMPMVQPADLWQESGRLDDYGPELLRINDRHKRPFVLGPTHEEVVTKLVAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   +QIQ KFRDE+RPRFGVMR REFLMKDAYSF L  E  + +Y  MF +
Sbjct: 121 ELSSYKQLPLNVFQIQSKFRDEIRPRFGVMRGREFLMKDAYSFHLEDECLEKTYQIMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF RL L   P+ A++G IGG+ SHEF VLAD+GE  +  S    DF    E  
Sbjct: 181 YCRIFERLELNFRPVLADTGSIGGEKSHEFHVLADSGEDDIAFSD-ASDFAANIEKA 236



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 112/203 (55%), Gaps = 3/203 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLP 297
           +D   L  +  Q      +  D+ N    D     +      RGIEVGHIF  G KY+  
Sbjct: 367 EDDAHLTGVNWQRDCNEISVHDIRNVVAGDPSPCGQGNIEIKRGIEVGHIFQLGRKYAEA 426

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA- 356
           M+       GK+  + MG YGIG  R+VAA IE +HD  GI WP ++APF+++++ +   
Sbjct: 427 MNCAVLNEGGKNQTLTMGCYGIGVSRIVAAAIEQNHDKYGIKWPKAIAPFQVAIVPMNMA 486

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                ++  E +Y  L++ G +V +DD  E+ G  FA  +L+G PL +I+G + +   ++
Sbjct: 487 KSARVKETAEALYESLNQAGIEVLFDDRKERPGVMFADHELMGTPLLLIIGERNLDAQQI 546

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
           E+K+R+TG +  ++++EV++  +
Sbjct: 547 ELKNRITGEKSLIAIDEVMSLFN 569


>gi|256113621|ref|ZP_05454441.1| threonyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|265994988|ref|ZP_06107545.1| threonyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|262766101|gb|EEZ11890.1| threonyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
          Length = 658

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 151/445 (33%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 233 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D      P +      IF
Sbjct: 291 HGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDHVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLQIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 411 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 457

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 458 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 508

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 509 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 562

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 563 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 620

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 621 NMRRLGSRDQESMTLDEAIARLCEE 645


>gi|218288925|ref|ZP_03493176.1| threonyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
 gi|218241014|gb|EED08191.1| threonyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
          Length = 648

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 71/434 (16%), Positives = 157/434 (36%), Gaps = 34/434 (7%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L + T +  +  +G+  WLP G K    +   I + +   G   +  
Sbjct: 239 EARERDHRRLGKELEIFT-LSPEVGQGLPLWLPNGAKIRRIIERYIVDLEESLGYQHVYT 297

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P L + +L+  SG ++ Y  +M      +++ ++  P +      +++  + SYR LP  
Sbjct: 298 PHLANVELYKISGHWEHYKDDMYPPMKIDNEELVLRPMNCPHHMMVYKHRLHSYRELPIR 357

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             ++    R E+     G+ R R   + DA+ F   P+  +  +  +     R++   G+
Sbjct: 358 IAELGTMHRYEMSGALAGLQRVRAMTLNDAHIFCR-PDQIEQEFTGVVRLIQRVYKDFGI 416

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                R                       +   + +  +    +      D+       E
Sbjct: 417 DDYYHRLS-------------YRDPKNTEKYVQNDEMWELAQSTLRKVMLDLGLEFVEAE 463

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    DV   ++  +L +++ +S   ++    F+   ++    +  + G DG+ H
Sbjct: 464 GEAAFYGPKLDV---QVRTALGKDETLSTIQLD----FHLPNRF----NLEYVGEDGERH 512

Query: 311 YVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              +   G +G M    A +   + G    W         + + + +         E++ 
Sbjct: 513 RPVVIHRGVVGTMERFVAFLIEQYKGAFPTW------LAPTQVVVASVADEFAGYAEEVA 566

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A+L ++G     D    +IG +   A     P  ++VG++   +  V ++    G    M
Sbjct: 567 AKLRELGIRAEADVSDNKIGYKIRQAQTHKIPYTLVVGAREREEGTVSVRKYHAGDLGVM 626

Query: 430 SLEEVINYASHRFS 443
            L++ +        
Sbjct: 627 PLDQFVRQIQDEIE 640


>gi|282877699|ref|ZP_06286514.1| threonine--tRNA ligase [Prevotella buccalis ATCC 35310]
 gi|281300271|gb|EFA92625.1| threonine--tRNA ligase [Prevotella buccalis ATCC 35310]
          Length = 654

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 154/445 (34%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y L + +   RD      ++ L      +  KG+  WLP G +    +  ++R+ Q R 
Sbjct: 232 EYLLMLEEAKKRDHRKIGKEMELFM-FSDRVGKGMPIWLPKGTELRLRLQEMLRKIQKRF 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G  E+  P + S +L+V SG Y  YGK+  +      +D+  +  P +     ++F    
Sbjct: 291 GYQEVITPHIGSKNLYVTSGHYAHYGKDSFQPIHTPEDDEEYMLKPMNCPHHCEVFACKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    +R E      G+ R R F   DA+ F    +        M    
Sbjct: 351 RSYKDLPLRIAEFGTVYRYEKSGELHGLTRVRSFTQDDAHIFCRPDQVKNEFLRVM---- 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                        ++A       D     I L D  + + +   D +         +   
Sbjct: 407 -----------DIIQAVFTIFNFDNFEAQISLRDPNDKEKYIGSDEVWAESEQAIIEACK 455

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L++ V     A Y    D     + D++    ++    ++      F          
Sbjct: 456 EKGLDAKVAYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLPQRF--------KL 504

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D        +     G++    AV+     G   +W           + I    +
Sbjct: 505 EYTAEDNTKQTPVMVHRAPFGSLERFTAVLIEHTAGHFPLW------LTPEQVAILPISE 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +++    ++       DD  E+IG +    +L   P  VIVG K  ++  V ++
Sbjct: 559 KFNGYAQQVVKYFTEQDIRATIDDRNEKIGRKIRDNELKRVPYMVIVGEKEAAEGLVSMR 618

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M +E+     ++  S 
Sbjct: 619 KQGGGEQATMKMEDFAARINNEVSE 643


>gi|265751997|ref|ZP_06087790.1| threonyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
 gi|263236789|gb|EEZ22259.1| threonyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
          Length = 646

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 156/445 (35%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVMLEEAKKRDHRKIGKEMDLFM-FTDMVGKGLPMWLPKGTALRIRLQDFLRRIQARY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + + +L++ SG Y  YGK+  +        +     P +      I+++  
Sbjct: 289 DYQEVMCPPIGNKNLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++    
Sbjct: 349 RSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHLFCR-PDQVKEEFLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  +++  +                  D    + +   D           +  +
Sbjct: 408 NIVFKSMNFENVEAQISLR--------------DKVNREKYIGSDENWEKAEQAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLTAKVEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G+D + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  EK+ A L K       DD  E+IG +    ++   P  +IVG K   + +V ++
Sbjct: 557 KFNEYAEKVKAELRKYDVRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVAVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M +EE     +   SN
Sbjct: 617 KQGEGDKGTMKIEEFGKNLAEEVSN 641


>gi|261855252|ref|YP_003262535.1| prolyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
 gi|261835721|gb|ACX95488.1| prolyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
          Length = 568

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 121/235 (51%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P +AEI SH+LMLR GMI + + G+Y+W PLG + L  V A++REE
Sbjct: 1   MRSSQFPLNTLKETPTEAEIISHQLMLRAGMIRRLASGLYTWSPLGLRVLRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA+E+ +P +Q A+LW ESGR+  YG E+LR+ DR+D+    GPTHEEV++D  R 
Sbjct: 61  MEGIGALELLMPAIQPAELWQESGRWQKYGPELLRVKDRHDREFCVGPTHEEVISDYARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  +YQ+Q KFRDE+RPRFGVMR+REF+MKDAYSF    E  + +Y  M+ +
Sbjct: 121 ELKSYRQLPICYYQVQTKFRDEIRPRFGVMRAREFIMKDAYSFHADVESLRVTYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGLK   + A++G IGG  SHEF VLAD+GE  +  + +  D+    E
Sbjct: 181 YTRIFTRLGLKFRAVEADTGSIGGKGSHEFHVLADSGEDAIAYAVNG-DYAANVE 234



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 3/207 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLP 297
           +D   +  +      P   T+D+ N    D  P+   K   ARGIEVGH+F  GT YS  
Sbjct: 362 EDGWHITGVNWGRDLPEPETADLRNAVEGDPAPDGQDKLAIARGIEVGHVFQLGTTYSEK 421

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M   F    GK     MG YGIG  R+VAA IE +HD  GI+WP  +APF+++++ I  H
Sbjct: 422 MHCEFLDEHGKPATAIMGCYGIGVSRIVAAAIEQNHDDNGIVWPVPLAPFEVAIVPINGH 481

Query: 358 DQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +   E++ A L+  G +V  DD G + G  FA  +L+G PL+++V  + ++  + 
Sbjct: 482 RAPAVQAEAERLEAELTAQGFNVLLDDRGLRPGVAFADMELIGIPLRIVVSERGLAAGEY 541

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E + R     + +  ++++ +      
Sbjct: 542 ETRLRWESENKSIIADQLLAWIGQNLK 568


>gi|170695316|ref|ZP_02886462.1| prolyl-tRNA synthetase [Burkholderia graminis C4D1M]
 gi|170139716|gb|EDT07898.1| prolyl-tRNA synthetase [Burkholderia graminis C4D1M]
          Length = 578

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 136/288 (47%), Positives = 180/288 (62%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQSDFVIGPTHEEVVTDIARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD    G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDAAGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-- 238
           Y+RIF RLGL    + A++G IGG  SHEF V+A+TGE  +       DF    E  +  
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIAETGEDAIAYCPT-SDFAANVEAAEAL 239

Query: 239 --FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
             +    +    +++   P  A  +   E L   L    +      E 
Sbjct: 240 PLYAQRAAPAEELKKTPTPGKAKCEAVAEYLNIPLERTIKSIVLATEN 287



 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/192 (35%), Positives = 108/192 (56%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ + K  D  P+ K V    RGIEVGH+F  GTKYS  M+AT    +GK   +
Sbjct: 382 PEPVVADIRDVKKGDPSPDGKGVLDICRGIEVGHVFQLGTKYSEAMNATCLDENGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YG+G  R++ A IE + D KGIIWP+S+APF++ L  +     +  R+  +K+YA 
Sbjct: 442 EMGCYGVGITRILGAAIEQNFDDKGIIWPESIAPFEVVLCPMGYDRSEAVREQADKLYAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R       + +
Sbjct: 502 LVEAGIDVILDDRGERPGVMFADWELIGVPHRLVIGDRGLKEGKLEYQGRRDAEATLLPV 561

Query: 432 EEVINYASHRFS 443
           +E       +  
Sbjct: 562 DEAAQTVIAKVR 573


>gi|239905697|ref|YP_002952436.1| threonyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
 gi|259516431|sp|C4XL11|SYT_DESMR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239795561|dbj|BAH74550.1| threonyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
          Length = 647

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 81/434 (18%), Positives = 153/434 (35%), Gaps = 40/434 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              Y   I +   RD      +L L +    +   G+  W P G+     +    R E  
Sbjct: 228 LKTYLHHIEEAKKRDHRKLGAQLDLFS-FSEEVGAGMCIWHPKGELIRTIIEDFERREHL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G   +  P +   +LW  SG YD+Y + M    + ++++    P +      I++S +
Sbjct: 287 RRGYDLVRGPLILRRELWERSGHYDNYRENM-YFTEIDEQSYGIKPMNCLSHMLIYKSRV 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  ++++ +  R E      G++R R+F   DA+      +  +     +    
Sbjct: 346 RSYRDLPQRYFELGVVHRHEKSGVLHGLLRVRQFTQDDAHILCRPDQLQEEITGVVRFV- 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                               + G    +F     T   +   S +  D    +     + 
Sbjct: 405 ------------------QDVVGLFGFDFEAELSTRPEKSIGSDEDWDRATKALVDAMES 446

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           I     + E   A Y    D+   KL D+L    + +    +    F    ++       
Sbjct: 447 IGLPYEVNEGDGAFYGPKIDI---KLKDALDRRWQCATIQCD----FTLPERFD----LV 495

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  ADG+      +    +GA+     V+     G    W   V    + +         
Sbjct: 496 YTDADGERKRPVMLHRVILGAVERFLGVLIEHTAGALPTWLSPVQARILIVT------DA 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            ++  E+  ARL + G  V  DD  E++G +   A +   P  ++ G K      + ++ 
Sbjct: 550 QKEFAEQALARLKEAGIRVELDDRNEKLGFKVREAQVEKIPYMLVAGDKEKELGGLNVRL 609

Query: 421 RLTGIREDMSLEEV 434
           R        +L+EV
Sbjct: 610 RSGENLGVKTLDEV 623


>gi|304315915|ref|YP_003851060.1| prolyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302777417|gb|ADL67976.1| prolyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 570

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 118/265 (44%), Positives = 164/265 (61%), Gaps = 1/265 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  M+ + + G+Y +LPLG++ L  +  I+REE
Sbjct: 1   MRLSQLLIPTLREVPAEAEIPSHTLMLKAAMMRKLASGVYIYLPLGKRVLKKIEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +  A+L  ESGR+D +G EM +L DRND+    GPTHEEV TD+ R+
Sbjct: 61  MDRAGAQEVLMPAIIPAELLKESGRWDVFGPEMFKLKDRNDREFCLGPTHEEVFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP T YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD+  +G   S++KM+ +
Sbjct: 121 EVKSYRQLPLTIYQIQTKYRDERRPRFGVMRSREFIMKDAYSFDVDWDGLDASFDKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK   + A+SG +GG  S EF+V +  GE  +        +    E  +  
Sbjct: 181 YCRIFDRCGLKYTVVEADSGAMGGKDSKEFMVTSSVGEAVIAYCDSC-GYAANEEKAECT 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                +  ++     Y       +E
Sbjct: 240 VEHKSDEEIKPLEKIYTPDVRTIDE 264



 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 103/190 (54%), Gaps = 3/190 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             SD+      D  P         RGIEVGHIF  GTKYS  + A +   +G +  + MG
Sbjct: 381 VVSDIRKVVDGDKCPRCGNPLKLERGIEVGHIFKLGTKYSDALGANYIDENGNEKPMIMG 440

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+ AA IE +HD KGIIWP S+AP+   ++ +   +   R+  EKIY  LSK 
Sbjct: 441 CYGIGLNRIAAAAIEQNHDDKGIIWPMSIAPYHAIVVPVNVSNDAQRNLAEKIYDELSKA 500

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +   DD   + G +F  ADLLG P+++ VG K  SD+ VE+K R      +++ +EV+
Sbjct: 501 GIETLIDDRDLRAGVKFNDADLLGIPIRITVGKK-ASDNIVELKLRRDENSIELNYDEVV 559

Query: 436 NYASHRFSNN 445
           N       N+
Sbjct: 560 NKVKELIINS 569


>gi|269119306|ref|YP_003307483.1| prolyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
 gi|268613184|gb|ACZ07552.1| prolyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
          Length = 571

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 127/281 (45%), Positives = 174/281 (61%), Gaps = 1/281 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+   +E P++AE+ SHKLMLR  MI + + G+YS+LPLG + L  V  I+REE
Sbjct: 1   MRLSKAFVKTYKEAPKEAEVISHKLMLRASMIKRLASGVYSYLPLGNRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +P LQ ADLW ESGR+ +YG E++R+ DR+++    GPTHEEV+TDI R+
Sbjct: 61  MDKSGAQEVFMPVLQPADLWKESGRWIAYGPELMRMKDRHEREFALGPTHEEVVTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  T E     Y  M  +
Sbjct: 121 EINSYKDLPMNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHTTHESLDEEYLNMKTT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG IGGD++HEF+VLA++GE  V             + T   
Sbjct: 181 YENIFTRCGLDFRAVEADSGSIGGDVTHEFMVLAESGEDDVLYCDSCDYAANKEKATSKA 240

Query: 241 DIISLNSIVEQWTAPYAA-TSDVHNEKLFDSLPENKRVSAR 280
           D    +   +         T  + +   F ++P +K V A 
Sbjct: 241 DFKESDEEAKSIELVETPNTWTIEDVAAFFNIPTSKTVKAI 281



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 72/191 (37%), Positives = 106/191 (55%), Gaps = 3/191 (1%)

Query: 256 YAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           Y  T D+   K  +  P        ARGIEVGHIF  GTKYS  M A     +GK   ++
Sbjct: 382 YDMTGDIREAKEGEKCPRCGGTLKIARGIEVGHIFELGTKYSEAMKANVLDENGKQATLK 441

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R+++A IE ++D  GIIWP ++AP+++ +I     D+      E +Y  L 
Sbjct: 442 MGCYGIGVSRIMSAAIEQNYDENGIIWPVNIAPYEVDVIIPNIKDKDQVRVAEDVYQLLK 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               DV  DD  E+ G +F  ADL+GFP+++I G K +++ KVE+K R TG  E + +  
Sbjct: 502 DHNIDVILDDRDERAGFKFKDADLIGFPMKIITG-KSIAEGKVEVKDRKTGNTEIVEIGT 560

Query: 434 VINYASHRFSN 444
           +++Y  +    
Sbjct: 561 LLDYVKNHLGK 571


>gi|310815279|ref|YP_003963243.1| threonyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
 gi|308754014|gb|ADO41943.1| threonyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
          Length = 648

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 152/441 (34%), Gaps = 45/441 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  + +L+E   RD      ++ L    + + + G   W P G      +   +R  Q +
Sbjct: 234 KAHMTMLEEAAKRDHRRLGREMDLF--HMQEEAPGQVFWHPNGWTVYTALQDYMRRRQRK 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G +E++ P + +  LW +SG +++Y   M  +       +        P +      IF
Sbjct: 292 DGYVEVNTPQVVNRVLWEKSGHWENYRDNMFIVEVDEEGAKEKVVNALKPMNCPCHVQIF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR LP    +     R E      G+MR R F   D + F  T +  +    K 
Sbjct: 352 NHGLKSYRELPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDGHIFC-TEDQIESETKKF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++  LG +S  ++  + P     + E    A+       C K   D+ +     
Sbjct: 411 IEFLASVYADLGFESWRVKLSTRPEKRIGTEESWDHAEQSLGN-ACRKAGYDYELQ---- 465

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                       E   A Y    +     L D++  + +     ++              
Sbjct: 466 ------------EGEGAFYGPKLEF---VLTDAIGRDWQCGTLQVDPNLP--------ER 502

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A + G DG  H    +    +G+      ++  +  GK   W         S++    
Sbjct: 503 LDANYIGQDGAKHRPIMLHRACLGSFERFVGILIENFAGKLPFWLAPRQVVVASIV---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++ A LS  G     D   E+I  +     L   PL + +G++ V +  V
Sbjct: 559 --SDADDYVHEVVAALSAAGVRAEADTRNEKINYKVREHSLGKVPLILAIGAREVEERTV 616

Query: 417 EIKHRLTGIREDMSLEEVINY 437
            ++         MSL+ ++  
Sbjct: 617 TVRRLGENQTATMSLDAILAE 637


>gi|254881560|ref|ZP_05254270.1| threonyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294778842|ref|ZP_06744259.1| threonine--tRNA ligase [Bacteroides vulgatus PC510]
 gi|254834353|gb|EET14662.1| threonyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294447295|gb|EFG15878.1| threonine--tRNA ligase [Bacteroides vulgatus PC510]
          Length = 646

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 156/445 (35%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVMLEEAKKRDHRKIGKEMDLFM-FTDMVGKGLPMWLPKGTALRIRLQDFLRRIQARY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + + +L++ SG Y  YGK+  +        +     P +      I+++  
Sbjct: 289 DYQEVMCPPIGNKNLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++    
Sbjct: 349 RSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHLFCR-PDQVKEEFLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  +++  +                  D    + +   D           +  +
Sbjct: 408 NIVFKSMNFENVEAQISLR--------------DKVNREKYIGSDENWEKAEQAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLTAKVEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G+D + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  E++ A L K       DD  E+IG +    ++   P  +IVG K   + +V ++
Sbjct: 557 KFNEYAEQVKAELRKFDVRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVAVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M +EE     +   SN
Sbjct: 617 KQGEGDKGTMKIEEFGKNLAEEVSN 641


>gi|330752453|emb|CBL87403.1| threonyl-tRNA synthetase [uncultured Flavobacteria bacterium]
          Length = 646

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 152/439 (34%), Gaps = 36/439 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD      +L L T    +  +G+  WLP G      +   +++ Q + G   +
Sbjct: 235 LEEAKKRDHRKLGKQLELFT-FSKKVGQGLPLWLPNGAALRSRLEDFLKKAQVKAGYEMV 293

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           S P +   +L+V SG Y+ YG++  +     + ++  +  P +     +I+     SY+ 
Sbjct: 294 STPHIGQKELYVTSGHYEKYGEDSFQPIETPKAEEEFLLKPMNCPHHCEIYNFKPYSYKE 353

Query: 128 LPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP  + +    +R E      G+ R R F   DA+ F  TP+     +  +    L +F 
Sbjct: 354 LPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPDQLDSEFKNVIDLVLYVFR 412

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
            LG ++   +                       +   S D  D    +     +D     
Sbjct: 413 SLGFENFTAQVSLRD-------------PKTPEKYIGSVDNWDKSEKAIINAAEDKGLDY 459

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
            I     A Y    D     + D+L  + ++    ++                 T+KGAD
Sbjct: 460 VIETGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERFDLTYKGAD 508

Query: 307 GKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            + H    +     G++    A++     G   +W           + I    +      
Sbjct: 509 NESHRPVMIHRAPFGSLERFVAILLEHTAGNFPLW------LMPQQVVILTISENYEKYA 562

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +K+   L         DD  E +G +   A++   P  +IVG +    + + ++      
Sbjct: 563 QKVLNLLEINEIRGLIDDRSETMGKKIRDAEIKKIPYMIIVGEQEEKSATLSVRQHGGED 622

Query: 426 REDMSLEEVINYASHRFSN 444
             ++SLE  +       + 
Sbjct: 623 LGNLSLEAFVKVVKAEINK 641


>gi|304309881|ref|YP_003809479.1| Threonyl-tRNA synthetase [gamma proteobacterium HdN1]
 gi|301795614|emb|CBL43813.1| Threonyl-tRNA synthetase [gamma proteobacterium HdN1]
          Length = 647

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 80/428 (18%), Positives = 147/428 (34%), Gaps = 41/428 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L      + + G+  W P G      V   +R+    
Sbjct: 241 KAHLTLLEEAAKRDHRRIGKDLDLF--HQQEEAPGMVFWHPKGWAIWQKVEQYVRKVYRE 298

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G  E+  P +    LW +SG +++Y + M    +   +     P +      I+ + + 
Sbjct: 299 SGYQEVRGPQILDVSLWKKSGHWENYQENMF-FTESEKRTYAVKPMNCPGHVQIYNNTLH 357

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  + +     R+E      G+MR R F   D + F    +             +
Sbjct: 358 SYRELPIRYAEFGGCHRNEPSGALHGIMRVRAFTQDDGHIFCTEDQVQAEVTAFHRQ-AM 416

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G ++I ++    P     + +    A+ G      +       +P E       
Sbjct: 417 KVYADFGFENISVKLALRPDKRIGTEDAWDKAENGLRAALAAAGVAWEELPGE------- 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    + H   L DS+        R  ++G I  F       ++A +
Sbjct: 470 ----------GAFYGPKIEYH---LKDSIG-------RAWQMGTI-QFDPMMPERLNAEY 508

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + +      +    +G+M     V+     G   +W   V     ++          
Sbjct: 509 VDENSQRQRPIMLHRAIVGSMERFIGVLIEHFAGNFPLWLSPVPVVVATIT------DDA 562

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           RD  E + A+L   G     D   E+IG +         P   +VG +  ++ KV I+  
Sbjct: 563 RDWAETVVAQLKAAGIQAEADLRNEKIGYKVREHSNAKIPQIWVVGKQEAAEQKVAIRRL 622

Query: 422 LTGIREDM 429
            +   E +
Sbjct: 623 GSQQNEVV 630


>gi|299533556|ref|ZP_07046932.1| threonyl-tRNA synthetase [Comamonas testosteroni S44]
 gi|298718462|gb|EFI59443.1| threonyl-tRNA synthetase [Comamonas testosteroni S44]
          Length = 639

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 140/442 (31%), Gaps = 36/442 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    I +HS G   W P G      V   +R      G
Sbjct: 231 YLFRLEEAEKRDHRKLGRELDLF--HIDEHSPGTVFWHPKGWAVWQQVEQYMRRVYQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D Y + M    D   +     P +      IF+  IKSY
Sbjct: 289 YQEVKAPQILDKGLWEKTGHWDKYRENMFT-TDSEKREYALKPMNCPGHIIIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +     R+E      G+MR R F   D + F  T +  +           ++
Sbjct: 348 RDLPLRFGEFGNCHRNEPTGSLHGIMRVRAFTQDDGHIFC-TEDQIQAEVTAFTSLLQKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +I  R  + P     + E                   D    +          
Sbjct: 407 YADFGFTNILYRLSTRPEKRIGTDE-----------------AWDKAENALAEGLRASGC 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    +     L D+L    +     ++              + A F G
Sbjct: 450 EFEYLPGEGAFYGPKIEY---TLKDALGREWQCGTIQVDPNMP--------ERLDAEFVG 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +    +G++     ++   H G    W          L    A     ++
Sbjct: 499 EDGERHRPIMLHRAILGSLERFIGILVEHHSGALPAWL--APVQAAVLNITDAQADYAQE 556

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L      V  D   E+I  +     +   P  ++ G K  +   V ++ R  
Sbjct: 557 VAQKLQKALPNQSLRVVTDLRNEKITYKIREHSMQKLPYILVAGDKEKAAGAVAVRARGN 616

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS++  I   +   +  
Sbjct: 617 KDLGVMSVDAFIELLAKDIAAK 638


>gi|150006539|ref|YP_001301283.1| threonyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|319642944|ref|ZP_07997580.1| threonyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
 gi|166223322|sp|A6L7J7|SYT_BACV8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|149934963|gb|ABR41661.1| threonyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|317385492|gb|EFV66435.1| threonyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
          Length = 646

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 156/445 (35%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVMLEEAKKRDHRKIGKEMDLFM-FTDMVGKGLPMWLPKGTALRIRLQDFLRRIQARY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + + +L++ SG Y  YGK+  +        +     P +      I+++  
Sbjct: 289 DYQEVMCPPIGNKNLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F   P+  K  + ++    
Sbjct: 349 RSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHLFCR-PDQVKEEFLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  +++  +                  D    + +   D           +  +
Sbjct: 408 NIVFKSMNFENVEAQISLR--------------DKVNREKYIGSDENWEKAEQAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLTAKVEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G+D + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  E++ A L K       DD  E+IG +    ++   P  +IVG K   + +V ++
Sbjct: 557 KFNEYAEQVKAELRKFDVRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVAVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M +EE     +   SN
Sbjct: 617 KQGEGDKGTMKIEEFGKNLAEEVSN 641


>gi|146329716|ref|YP_001210021.1| prolyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
 gi|166980118|sp|A5EXK9|SYP_DICNV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146233186|gb|ABQ14164.1| prolyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
          Length = 572

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 128/237 (54%), Positives = 166/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+++L   +E+P +AE+ SH+LMLR GMI Q + GIYSWLPLG + L+ V+AIIREE
Sbjct: 1   MRLSQFWLVTKKESPAEAEVISHQLMLRAGMIRQTAVGIYSWLPLGLRVLNKVSAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P  Q A+LW ESGR+ +YG E+ R  DR+ +    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGALEVVMPAAQPAELWQESGRWHAYGPELQRFIDRHQRDYCIGPTHEEVVTDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REF+MKD YSFDL   G K+SY KM+ +
Sbjct: 121 DLSSYKQLPVNLYQIQTKFRDEIRPRFGVMRGREFVMKDGYSFDLDVAGMKNSYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF RLGL   P+ A++G IGG  SHEF VLA+TGE  +    +  D+    E  
Sbjct: 181 YCRIFDRLGLNYRPVIADNGAIGGTGSHEFHVLAETGEDSIAF-SNASDYAANIEKA 236



 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/194 (36%), Positives = 100/194 (51%), Gaps = 3/194 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A    T+D+ N    D  P+ +   +  RGIEVGH+F  G KYS  M+ T    DG 
Sbjct: 376 ERDAEITRTADIRNVVEGDPSPDGQGTLLIRRGIEVGHVFQLGEKYSKAMNLTVPLEDGT 435

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
                MG YGIG  RV+AA IE +HD  GIIW   +APF ++++ I     +  RDA E 
Sbjct: 436 LCTPLMGCYGIGVTRVIAAAIEQNHDENGIIWSKELAPFSVAILPINADKSEAVRDAAEA 495

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y +  + G DV  DD   + G  FA  DL+G P ++++  K ++   VE K R      
Sbjct: 496 LYQKFLQAGVDVVLDDRNRRAGVMFADIDLIGIPARIVISDKTLATGSVEFKRRNEQETF 555

Query: 428 DMSLEEVINYASHR 441
            +SLEE++      
Sbjct: 556 HISLEEIVAQFCAE 569


>gi|126663528|ref|ZP_01734525.1| threonine--tRNA ligase (threonine tRNA synthetase) [Flavobacteria
           bacterium BAL38]
 gi|126624476|gb|EAZ95167.1| threonine--tRNA ligase (threonine tRNA synthetase) [Flavobacteria
           bacterium BAL38]
          Length = 633

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 161/445 (36%), Gaps = 39/445 (8%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E  R D      +L L      +  +G+  WLP G    D +   +++ Q + G
Sbjct: 216 YLELLEEAKRRDHRKLGKELDLFH-FSPKVGQGLPLWLPKGAALRDRLEQFLKKAQKKAG 274

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             ++  P +   DL+V SG Y  YG +  +        +  +  P +     +I+ +   
Sbjct: 275 YEQVVTPHIGMKDLYVTSGHYAKYGADSFQPIHTPAEGEEFLLKPMNCPHHCEIYNARPW 334

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP  + +    +R E      G+ R R F   DA+ F  TP+     +  +    L
Sbjct: 335 SYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPDQLDTEFKNVIDLVL 393

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  LG ++   +     +                 +   S +  +    +  +   D 
Sbjct: 394 YVFGSLGFENFTAQVSVRDLD-------------NPDKYIGSVENWEKAENAIISAAKDK 440

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I     A Y    D     + D+L  + ++    ++                 T+
Sbjct: 441 GLNYVIEAGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERFELTY 489

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           KG+D K H    +     G+M    A++     G   IW        +SL       +  
Sbjct: 490 KGSDDKLHRPVMIHRAPFGSMERFIAILLEHTAGNFPIWLMPEQAIILSL------SEKY 543

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +K+   L         D+  E IG +   A++  +P  +IVG +   +  + ++ R
Sbjct: 544 ENYAKKVLDLLENHEIRALIDNRNETIGKKIREAEMNKYPFMLIVGEEEEKNGTISVRQR 603

Query: 422 LTGIREDMS--LEEVINYASHRFSN 444
               + ++S  +E+     +   + 
Sbjct: 604 GQEGKGNISVTIEQFAAMINEEINK 628


>gi|121603656|ref|YP_980985.1| prolyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
 gi|152112939|sp|A1VK86|SYP_POLNA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120592625|gb|ABM36064.1| prolyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
          Length = 581

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 119/237 (50%), Positives = 160/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SH+LM+R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHQLMMRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIEMS+P +Q A+LW E+GR+++ G E+LR+ DR+ +  +  PT EEV+TD+ R 
Sbjct: 61  MNRAGAIEMSMPVIQPAELWQETGRFEAMGPELLRIKDRHGRDFVVQPTSEEVVTDVMRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD     +K SY  M  +
Sbjct: 121 DIRSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQTAAKVSYQNMAEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE  +       D+    E  
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYCPT-SDYAANMEKA 236



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/187 (37%), Positives = 107/187 (57%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K      RGIEVGH+FY GTKYS  M+ATF G +GK  +++MG Y
Sbjct: 394 ADIRNVVAGDPSPDGKGLLAIERGIEVGHVFYLGTKYSRAMNATFLGENGKPQFLEMGCY 453

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVG 376
           GIG  R+ AA IE +HD +GIIWPD++APF + +  I        + A +K+Y+ L   G
Sbjct: 454 GIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVICPITPERFPDVKAAADKLYSELLGAG 513

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD GE+ G+ FA  +L+G P +V +G + + +  +E +HR       +      +
Sbjct: 514 VDVILDDRGERPGAMFADWELIGVPHRVTIGDRGLKEGHIEYQHRRDTAASKVEAAAAFD 573

Query: 437 YASHRFS 443
           +   + +
Sbjct: 574 FLKGKLA 580


>gi|241761215|ref|ZP_04759303.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374122|gb|EER63619.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 659

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 82/456 (17%), Positives = 145/456 (31%), Gaps = 52/456 (11%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K  L  L+E   RD      ++ L    + Q ++G   W P G      + A +R  
Sbjct: 233 KQLKVHLERLEEAQKRDHRRLGQEMDLF--HLQQEAQGSVFWHPNGYTIWLQLEAYLRRR 290

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYG 107
                  E+  P L  A LW  SG +  + + M  + D                  M   
Sbjct: 291 MKNANYKEVKTPQLMDAALWEASGHWGKFRENMFVVPDEIPSTDPDKPVLSGKGNLMALK 350

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLT 166
           P +      IF+  I+SYR LP    +     R+E      G+MR R+    DA+ F   
Sbjct: 351 PMNCPAHIQIFKQGIRSYRELPLRMLEFGCCHRNEAHGALHGLMRVRQLTQDDAHIFCTA 410

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +    +          I+  LG  S  ++    P       E    A+ G         
Sbjct: 411 EQIVTET-KDFVNLLDSIYRDLGFTSYAVKLSLRPELRAGDDELWDNAENGLRSALEQVG 469

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             D+                  +    A Y    + H   L D++    +     ++   
Sbjct: 470 ITDYEE----------------LPGEGAFYGPKLEFH---LTDAIGRTWQCGTLQLDYVL 510

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                      + A++   DG       +    IG       ++   H G+  +W   V 
Sbjct: 511 P--------ERLDASYVAEDGSRKRPVMLHRAIIGTFERFIGILIEHHAGRFPLWMAPVQ 562

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
               +++             E +  ++   G  V  D   E+I  +     L   P  ++
Sbjct: 563 AVVATIV------SEADSFAESVVEKMKAAGLRVVSDIRNEKINYKIREHSLTKVPNILV 616

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           VG +   + KV I+   +  +  +S++E I      
Sbjct: 617 VGKREAEEGKVAIRKLGSRDQIILSVDEAIALLLEE 652


>gi|326538797|gb|ADZ87012.1| threonyl-tRNA synthetase [Brucella melitensis M5-90]
          Length = 661

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 152/445 (34%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 236 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 293

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 294 HGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 353

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 354 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLQIN 413

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 414 -DHILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 461 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 511

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 512 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 565

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 566 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 623

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 624 NMRRLGSRDQESMTLDEAIARLCEE 648


>gi|312877991|ref|ZP_07737931.1| prolyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795226|gb|EFR11615.1| prolyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 572

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 122/265 (46%), Positives = 162/265 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRSGAQEVHMSALMPKELWEESGRWAVFGPEMFRIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  +G   SY KM+ +
Sbjct: 121 EITSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDIDEKGLDISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++   K         +    D
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYCKSCGYAANLEKAECLD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
             +  N  +++    Y        E
Sbjct: 241 TPVENNEELKEKQEVYTPNVRTIEE 265



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/194 (35%), Positives = 103/194 (53%), Gaps = 4/194 (2%)

Query: 256 YAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
               +D+ N    D  P+    K    RGIEVGHIF  GTKY+   +  +    G+   +
Sbjct: 375 VTKFADLRNITQDDLCPKCRSQKVTIERGIEVGHIFKLGTKYTQAFNCVYTDEKGEKKLM 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R  AA+IE  HD  GIIWP +VAP+++ ++ +   D+       +IY  L
Sbjct: 435 IMGCYGIGINRTAAAIIEQMHDEDGIIWPITVAPYEVIIVPVNVKDEAQNKIAFEIYENL 494

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K G +V  DD  E+ G +F  ADL+G P +V VG K VS+ K+EI++R T    ++ ++
Sbjct: 495 QKNGVEVLIDDRDERAGVKFKDADLIGIPFRVTVGKK-VSEGKLEIRNRRTKESFEVEID 553

Query: 433 EVINYASHRFSNNR 446
             + +  +     +
Sbjct: 554 NAVEFIINLIKQEK 567


>gi|284048708|ref|YP_003399047.1| prolyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
 gi|283952929|gb|ADB47732.1| prolyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
          Length = 571

 Score =  240 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 134/364 (36%), Positives = 187/364 (51%), Gaps = 6/364 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+E P +A I SHKLMLR G I + + G+YS+LPL  ++L  +  IIREE
Sbjct: 1   MRVSQLYAPTLREVPAEAVIESHKLMLRAGYIRKVAGGLYSYLPLAWRSLRKIEEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
              TGA E+ +P +Q +++W ESGR+ +YG EM +L DR+ +    GPTHEE++T + R 
Sbjct: 61  MVPTGAQEIMMPIVQPSEIWQESGRWPAYGAEMFKLKDRHGRDFCLGPTHEELVTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP T YQIQ KFRDE RPRFG+MRSREF+MKDAYSFD   EG   SY   + +
Sbjct: 121 DLRSYRQLPVTLYQIQSKFRDEKRPRFGLMRSREFIMKDAYSFDKDAEGLDKSYQDEYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP--IPSENTD 238
           Y RIF R GL   P+ A+SG IGG  SHEF+ LAD+GE  +              +E   
Sbjct: 181 YSRIFTRCGLDYRPVEADSGAIGGKGSHEFMALADSGEAGIVYCDTCEYAADVEKAECAA 240

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN-KRVSARGIEVGHIFYFGTKYSLP 297
            +        +E+   P  +T +   + L   + ++ K V+    E   +  F       
Sbjct: 241 IEAPAEEPKELEKKATPDCSTIEAVCQYLGSPIEKSVKAVAFVTDEGKLVLCFVRGDKEV 300

Query: 298 MSATFKGADGKD---HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                  A G +             G +      I  + D   I+   +V          
Sbjct: 301 NDTKVVNAVGCNEVDMAPDDLIREAGTVPGFMGPIGLNKDKAIILIDHTVMHMHNVCCGA 360

Query: 355 KAHD 358
              D
Sbjct: 361 NEKD 364



 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 67/192 (34%), Positives = 101/192 (52%), Gaps = 3/192 (1%)

Query: 256 YAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           Y   +D+      D  P  +     ARGIEVG +F   TKYS  + AT+   DGK+H + 
Sbjct: 378 YTQVADISTAVAGDKCPHCDGHLKEARGIEVGQVFKLNTKYSEALHATYLDVDGKEHPLV 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R +AA IE  HD  GII P ++AP+++ ++ +   D+       +I+  L+
Sbjct: 438 MGCYGIGVGRTLAAAIEQHHDKDGIIMPRNIAPYQVMVLAMNVKDEESWQKAVEIHDALN 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE- 432
           + G D   DD  E+ G +F  ADL+G PL++++G K +  + +E K R  G   D+S E 
Sbjct: 498 QAGIDTLLDDRDERAGVKFKDADLIGCPLRIVIGPKTMKRNAMETKLRCNGEMADVSFEG 557

Query: 433 EVINYASHRFSN 444
           + I         
Sbjct: 558 DWIQAIRDILDK 569


>gi|254511025|ref|ZP_05123092.1| threonyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
 gi|221534736|gb|EEE37724.1| threonyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
          Length = 652

 Score =  240 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 148/443 (33%), Gaps = 45/443 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W P G K    +   +R  Q+R
Sbjct: 238 KAHLHMLEEAAKRDHRKLGREMDLF--HMQEEAPGQIFWHPNGWKIYTTLQDYMRRMQDR 295

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-----GPTHEEVMTDIF 118
            G +E++ P +    LW  SG +D Y + M  +    + A         P +      +F
Sbjct: 296 DGYVEVNTPQVVDRKLWEASGHWDKYQENMFIVEVDEEHAREKAINALKPMNCPCHVQVF 355

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D + F  + +  +    K 
Sbjct: 356 NQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIFC-SEDQIESETAKF 414

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                +++  LG     ++  + P     S E                   D    +   
Sbjct: 415 IAFLSKVYADLGFHDWTIKLSTRPEKRIGSDE-----------------SWDIVEKALGD 457

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     ++E   A Y    +     L D++  + +     ++              
Sbjct: 458 ACKAAGYDYEVLEGEGAFYGPKLEF---TLTDAIGRDWQCGTLQVDPNLP--------ER 506

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A F GADG  H    +    +G+      ++   H GK   W         S+     
Sbjct: 507 LDANFIGADGAKHRPFMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIT---- 562

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++   L   G     D   E+I  +     +   P+ + VG + V +  V
Sbjct: 563 --SEADDYVMEVVDTLKAAGIRAEADIRNEKINYKVREHSVSKVPVILAVGHREVEERTV 620

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
            I+       +  SLE V N  S
Sbjct: 621 TIRRLGEKQTQVQSLETVTNELS 643


>gi|293400866|ref|ZP_06645011.1| threonine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305892|gb|EFE47136.1| threonine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 577

 Score =  240 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 149/442 (33%), Gaps = 40/442 (9%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD +    ++ L   M+ +++ G+  +LP G    + +     EE  +   
Sbjct: 172 LHMLEEAKKRDHKKLGREMGLF--MMSEYAPGMPFFLPNGMIIRNLLENFWYEEHTKENY 229

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P + S +LW  SG + +Y + M      +D+     P +      +F++ + SY+
Sbjct: 230 KFIKTPIMMSKELWEVSGHWANYKENMYTTM-VDDREFAIKPMNCPGSLLVFKNGLHSYK 288

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++    R E      G+ R R F   DA+ F    +       ++     R++
Sbjct: 289 DLPLRMGELGQVHRHEASGALNGLFRVRTFTQDDAHIFMRPDQIESE-VKELINFIDRVY 347

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL        + P                E +        +    +           
Sbjct: 348 SIFGLSYRI-ELSTRP----------------EKKYIGDLAIWEKSEKALADACVSAGKD 390

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             +     A Y    D H   + DSL    +     +++                T+   
Sbjct: 391 YKVNPGDGAFYGPKLDFH---IKDSLGREWQCGTIQLDMNLP--------ERFDLTYVEK 439

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG     V +     G++     ++   + G    W          ++ +  H +    A
Sbjct: 440 DGTKVRPVMLHRVIFGSIERFIGILIEHYAGHFPTWLA-----PTQVMVVPVHYERHAQA 494

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              I  +L  +G     D   E++G +   A L   P Q+++G   V  + V ++   + 
Sbjct: 495 ANAINEKLLAMGFRSKSDARNEKLGYRIREAQLAKIPYQLVIGDGEVEANTVTVRRAQSK 554

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               M +EE I   S      R
Sbjct: 555 ESVTMPVEEFIAKLSAEVKEKR 576


>gi|118580173|ref|YP_901423.1| prolyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
 gi|166980138|sp|A1APU5|SYP_PELPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118502883|gb|ABK99365.1| prolyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
          Length = 576

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 127/237 (53%), Positives = 164/237 (69%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+YF+P ++E P DAE+ SH+LMLR GMI + + GIY++LPLG +++    AI+REE
Sbjct: 1   MFYSRYFIPTIKETPSDAEVVSHQLMLRAGMIRKLAAGIYNYLPLGLRSIRKFEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIEM +P++Q A+LW ESGR+  YGKE+LR  DR D     GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIEMLMPSVQPAELWEESGRWSFYGKELLRFRDRKDGEFCMGPTHEEVITDMVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+    +  SY  MF +
Sbjct: 121 EIKSYRQMPVNFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDVDSAAADGSYELMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y+RIF R GL    + A++G IGG  SHEF+VLAD+GE  +        +    E  
Sbjct: 181 YMRIFERCGLNFRAVEADTGTIGGSSSHEFMVLADSGEDAIVSCDSCR-YAANVEKA 236



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 77/184 (41%), Positives = 109/184 (59%), Gaps = 3/184 (1%)

Query: 258 ATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              D+ N +  D  P     K    RGIEVGH+F  GTKYS  + AT+  ADGK+  + M
Sbjct: 381 RFVDLRNVEAGDPCPRCEGGKLEMWRGIEVGHVFKLGTKYSQALGATYLDADGKEQVIFM 440

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R VAA IE +HD  GII+P  +APF  S++ +   D+    A E++Y RL +
Sbjct: 441 GCYGIGIGRTVAAAIEQNHDDNGIIFPLPLAPFHCSVVALNTKDKGVMAAAEEMYFRLEQ 500

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V +DD  E+ G +F   DL+G PL+++VGSK +S+ KVE+K R +G    +S +E 
Sbjct: 501 QGIEVLFDDRDERPGVKFKDNDLIGIPLRIVVGSKGLSEGKVEVKIRASGEMLLLSPDEA 560

Query: 435 INYA 438
           +   
Sbjct: 561 VETI 564


>gi|121609349|ref|YP_997156.1| prolyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
 gi|152112961|sp|A1WKI1|SYP_VEREI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|121553989|gb|ABM58138.1| prolyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
          Length = 581

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 161/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L++ P DAE+ SH+LM+R G+I +   GIYS++P+G + L  + AI+REE
Sbjct: 1   MKASRFFVSTLKDAPADAEVVSHQLMMRAGLIKKLGAGIYSYMPMGLRVLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+LW E+GR+D  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELTMPVVQPAELWQETGRFDKMGPELLRIQDRHGRDFVVQPTSEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD  P  +K SY  M  +
Sbjct: 121 ELRSYKQLPKNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDPAAAKASYLVMEQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE  +       D+    E  
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVVAATGEDAIVYCPQ-SDYAANMEKA 236



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/184 (37%), Positives = 106/184 (57%), Gaps = 3/184 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K V    RGIEVGH+FY GTKYS  M+A+F   +GK   ++MG 
Sbjct: 393 VADLRNVVAGDRSPDGKGVLAIERGIEVGHVFYLGTKYSRAMNASFLDENGKPQPLEMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           YGIG  R+ AA IE +HD +GIIWPD++APF   +  I        + A +K+YA     
Sbjct: 453 YGIGITRLPAAAIEQNHDARGIIWPDAIAPFTAVICPIGMERSAAVQAAADKLYADFLAA 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD GE+ G+ FA  +L+G P +V++  + + + ++E +HR       ++  +++
Sbjct: 513 GIDVLLDDRGERPGAMFADWELIGVPHRVVISERGLKEDQLEYQHRRDQSATKVAAADIL 572

Query: 436 NYAS 439
            +  
Sbjct: 573 AHVK 576


>gi|169830802|ref|YP_001716784.1| prolyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C]
 gi|226699139|sp|B1I2J1|SYP_DESAP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169637646|gb|ACA59152.1| prolyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C]
          Length = 566

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 121/321 (37%), Positives = 177/321 (55%), Gaps = 5/321 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y +P L+E P +AE+ SH+L+L+ G I + + G+Y+ LPL  + L  +  IIREE
Sbjct: 1   MRASEYLIPTLREIPAEAEVVSHRLLLKAGFIRKAASGVYTLLPLAHRVLRKIMRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q A+LW+ SGR+  YG E+ RL DR+ +    GPTHEE++T++   
Sbjct: 61  MDRQGGQEILLPIMQPAELWLRSGRWHVYGPELFRLKDRHGRDFCLGPTHEEIITELVMG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++S++ LP   YQIQ K+RDE RPRFG++R REF+MKD YSFD    G + SY KMF +
Sbjct: 121 DVRSHKQLPLLLYQIQNKYRDERRPRFGLLRGREFIMKDLYSFDRDEAGLEVSYRKMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENT-- 237
           Y R+F R GL+  P+ A+SGPIGG +SHEF+VLA +GE   V+C +D   +    E    
Sbjct: 181 YQRVFSRCGLEFRPVEADSGPIGGSVSHEFMVLAGSGEALVVYCPEDACGYAANVEKAES 240

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTKYS 295
             +   +    +     P      V +   F  +   + V       + G          
Sbjct: 241 RAERPKTKEDPLALELLPTPGKRTVEDVCAFLGVGPEQIVKTILYETDRGPCAALVRGDR 300

Query: 296 LPMSATFKGADGKDHYVQMGS 316
                  + A G  H    G 
Sbjct: 301 EVNEVKLQNAIGAMHLEMAGP 321



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/192 (37%), Positives = 106/192 (55%), Gaps = 3/192 (1%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                P    +D+   +  D  P+  R  ++ARGIEVG +F  GTKYS  M  T+    G
Sbjct: 373 PGRDFPLQVVTDLRLVREEDPCPQCGRPLLAARGIEVGQVFKLGTKYSEVMGLTYLDEHG 432

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            +  V MG YGIG  R +AA +E +HD +GIIWP ++APF + ++ +   D+V     EK
Sbjct: 433 TERPVVMGCYGIGVTRTLAAAVEQNHDEQGIIWPTAIAPFAVVVVPVNVRDEVQSALAEK 492

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            Y  LS+ G +V  DD  E+ G +F  ADL+G+PL+V VG K   D  VE++ R  G   
Sbjct: 493 AYTVLSEAGVEVLLDDRPERPGVKFKDADLVGYPLRVTVG-KTAVDGLVELRLRKNGDTR 551

Query: 428 DMSLEEVINYAS 439
            + + E+++   
Sbjct: 552 LVGIGELVDTVR 563


>gi|145630468|ref|ZP_01786248.1| frataxin-like protein [Haemophilus influenzae R3021]
 gi|144983858|gb|EDJ91300.1| frataxin-like protein [Haemophilus influenzae R3021]
          Length = 572

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 147/428 (34%), Positives = 204/428 (47%), Gaps = 39/428 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E     
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAV 239

Query: 236 -------------NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                          D  +  ++  +VEQ+  P   T      K  D       +  RG 
Sbjct: 240 AIGERQAPTAEMCLVDTPNAKTIAELVEQFNLPIEKTVKTLIVKGADENQPLVALIIRGD 299

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
              +         +     F         +  G   +GA+ +    I          +  
Sbjct: 300 HELNEIKAQKHPLVADPLEFADETEIKAKIGAGVGSLGAVNLNIPAIIDRTVALMSDFSC 359

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYA------------RLS-KVGCDV--FWDDMGEQ 387
                     N+     V       +               L  K G +V   +     Q
Sbjct: 360 GANIDGKHYFNVNWERDVAIPKVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIF-----Q 414

Query: 388 IGSQFAVA 395
           +G +++ A
Sbjct: 415 LGKKYSEA 422



 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 110/208 (52%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVAIPKVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +  I   D +APF ++++ +   
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R TG +E +S +++++  + +  N
Sbjct: 544 EYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|313893443|ref|ZP_07827015.1| proline--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442084|gb|EFR60504.1| proline--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 572

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 112/235 (47%), Positives = 160/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  +K + P L+E P DA++ S +LMLR G + + + G+YS+LPLG +++  + AI+REE
Sbjct: 1   MLATKLYAPTLREVPSDADVVSQQLMLRAGFMRKTANGLYSFLPLGWRSIKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRASAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDNEFCLGPTHEEIITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKDAYSFD+   G + SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDAYSFDVDEAGLEESYKSMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF+R GL   P+ A+SG IGG  +HEF+ +A+ GE  +       D+    E
Sbjct: 181 YTRIFNRCGLTFRPVEADSGAIGGSGTHEFMAIAEAGEADIVYCTKC-DYAANIE 234



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/178 (38%), Positives = 100/178 (56%), Gaps = 2/178 (1%)

Query: 269 DSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P        A+GIEVG +F  GTKYS  + ATF   +G+ + + MG YGIG  R +A
Sbjct: 394 DVCPTCGGSLEHAKGIEVGQVFKLGTKYSEALQATFLDQNGRPNPMIMGCYGIGVSRTLA 453

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A IE  HD  GIIWP S+APF+  ++ I A D+      E IY+ L + G DV  DD  +
Sbjct: 454 AAIEQYHDENGIIWPRSIAPFEAVIVPINAKDEALMSTSETIYSALQEAGVDVLLDDRKD 513

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + G +F  ADL+G+PL++ V    + +++VEI+ R TG     +++ V    +    N
Sbjct: 514 RAGVKFKDADLIGYPLRITVSKNTLENNEVEIQIRKTGEALSCAIDSVATKVTELLQN 571


>gi|256848462|ref|ZP_05553904.1| threonyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
 gi|256714729|gb|EEU29708.1| threonyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
          Length = 601

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 153/441 (34%), Gaps = 36/441 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD  +  ++L L    +  +   G+  WLP G      +   I + +   G  
Sbjct: 189 KRQEAKERDHRVIGNQLDLF--FVDPKVGAGLPYWLPKGAAIRRTIERYIIDREVADGYE 246

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + D +  SG ++ Y  +M    D  D  M    P +      +++ H++SYR
Sbjct: 247 HVYTPVLMNLDAYKTSGHWEHYRDDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHLRSYR 306

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++
Sbjct: 307 DLPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQIRSE-FAKILKLIMSVY 365

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +     R                       + + + +  +          DD+   
Sbjct: 366 KDFDITDYSFRLSLRD-------------PKNVKKYYANDEMWEKSQSMLKQAMDDLSLD 412

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G 
Sbjct: 413 YYEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLTYVGK 461

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG++H    +    +G M    A +   + G    W             I   D    D 
Sbjct: 462 DGQEHMPVMIHRGVVGTMERFVAYLTEIYKGAFPTWLAPEQVH-----IIPVSDDKHGDY 516

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++ A L      V  D   E++G +   A     P  ++VG   +++  V ++     
Sbjct: 517 ADQLGAELRAAKIRVNVDHRNEKMGYKIREAQTQKVPYTLVVGDDEMANGSVSVRKYGEK 576

Query: 425 IREDMSLEEVINYASHRFSNN 445
            +  MS ++ ++      ++ 
Sbjct: 577 EQNSMSKQDFMDELLADIASY 597


>gi|161510954|ref|YP_089255.2| prolyl-tRNA synthetase [Mannheimia succiniciproducens MBEL55E]
 gi|114152209|sp|Q65QU0|SYP_MANSM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 571

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 123/243 (50%), Positives = 163/243 (67%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L+ V  IIREE
Sbjct: 1   MRTSKYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPSGIRVLEKVKNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKSGAIEVLMPVVQPAELWQESGRWEQYGLELLRFNDRGNRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTKESLQATYDVMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V       D+    E  +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDYAANIELAEAI 239

Query: 241 DII 243
            + 
Sbjct: 240 AVG 242



 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNINWERDVALPKIADLRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGQKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
           +AT +G DGK   + MG YGIG  RVVA+ IE  HD +  I   D++APF ++++ +   
Sbjct: 424 NATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGIIWPSDAIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G +V +DD  E+ G  FA  +L+G P  VI+G K + + ++
Sbjct: 484 KSESVQAYAEELYQTLLAQGVEVIFDDRKERPGVMFADMELIGVPHMVIIGEKNLENGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R T  ++ ++ ++++++     +
Sbjct: 544 EYKNRRTSEKQMIAKDQLLDFLKANVN 570


>gi|152977868|ref|YP_001343497.1| prolyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
 gi|171472919|sp|A6VKR5|SYP_ACTSZ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150839591|gb|ABR73562.1| prolyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
          Length = 571

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 148/429 (34%), Positives = 203/429 (47%), Gaps = 41/429 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRSMASGLYNWLPTGVKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +QSA+LW ESGR++ YG E+LR +DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQSAELWQESGRWEQYGPELLRFSDRGNRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y  M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTTQESLQQTYEVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP------- 233
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V       DF          
Sbjct: 181 YTNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAI 239

Query: 234 -----------SENTDFDDIISLNSIVEQWTAPYAATSDVHNEK-LFDSLPENKRVSARG 281
                       E  D  +  ++  +VEQ+  P   T      K   +  P    +    
Sbjct: 240 AVGERQAPGKAMELVDTPNAKTIAELVEQFNLPIEKTVKTLIVKGATEDAPLVALIIRGD 299

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
            E+  I        +     F         +  G   +G + +    I          + 
Sbjct: 300 HELNEI-KAQKHPLVADPLEFADETEIKAKIGAGVGSLGPVNLNIPAIIDRSVALMSDFG 358

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYA------------RLS-KVGCDV--FWDDMGE 386
                      NI             +               L  K G +V   +     
Sbjct: 359 AGANIDGKHYFNINWERDAAMPEAFDLRNVAEGDPSPDGKGTLQIKRGIEVGHIF----- 413

Query: 387 QIGSQFAVA 395
           Q+G +++ A
Sbjct: 414 QLGKKYSEA 422



 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     +I  +  A      D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNINWERDAAMPEAFDLRNVAEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
           +AT +G DGK   + MG YGIG  RVVAA IE  HD +  I   D +APF ++++ +   
Sbjct: 424 NATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDERGIIWPTDEIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  R   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K +   ++
Sbjct: 484 KSESVRAFAEELYQTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLDKGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R  G ++ ++ + ++ + +    
Sbjct: 544 EYKNRRNGEKQMIAKDRLLAFLAENVK 570


>gi|256830760|ref|YP_003159488.1| threonyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
 gi|256579936|gb|ACU91072.1| threonyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
          Length = 644

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 149/437 (34%), Gaps = 40/437 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              I +   RD      +L L +    +   G+  W P G      +   + +E  R G 
Sbjct: 230 LAMIEEAKKRDHRKLGPQLDLFSFH-ERGGAGMAYWHPKGGLVRTILEDFVNKEMIRRGY 288

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P +   DLW  SG Y +Y + M    + ++      P +      I+ +  +SYR
Sbjct: 289 GIVRTPQILKRDLWETSGHYANYRENM-YFTEIDEVPYGVKPMNCVAHMLIYNTSQRSYR 347

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP   ++  +  R EL     G+MR R+F   DA+      +             +   
Sbjct: 348 DLPVRLFEFGVVHRHELSGVLHGLMRVRQFTQDDAHIICRPDQLLDE-----IKGVMTWI 402

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             L                    E+ +   T   +   S    +    +       +   
Sbjct: 403 QDLMGVFG--------------FEYSMEISTRPEKSIGSDADWERATSALMDAMGQMELP 448

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
            +I E   A Y    DV   KL D L    + S   ++    F    ++       + G 
Sbjct: 449 YTINEGDGAFYGPKIDV---KLRDCLGRQWQCSTIQVD----FTLPDRFD----LLYVGE 497

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG+ H    +    +G++     ++    +     +P  +AP +  ++ +  +     + 
Sbjct: 498 DGERHRPVMVHRAIMGSVERFIGILT---EHFAGAFPAWLAPVQARILTVTDNHD---EF 551

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K    L + G  V  D   E++G +   A +   P  +++G + V  + V ++     
Sbjct: 552 ARKCQDALQREGVRVELDLRNEKLGYKVREAQMEKVPYALVIGDQEVEQACVNVRMLGGN 611

Query: 425 IREDMSLEEVINYASHR 441
               MS++   ++    
Sbjct: 612 NLGVMSVDAFADHLRQE 628


>gi|15604092|ref|NP_220607.1| threonyl-tRNA synthetase [Rickettsia prowazekii str. Madrid E]
 gi|2501061|sp|O05947|SYT_RICPR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2073475|emb|CAA72469.1| threonyl-tRNA synthetase [Rickettsia prowazekii]
 gi|3860783|emb|CAA14684.1| THREONYL-TRNA SYNTHETASE (thrS) [Rickettsia prowazekii]
 gi|292571818|gb|ADE29733.1| Threonyl-tRNA synthetase [Rickettsia prowazekii Rp22]
          Length = 635

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 157/443 (35%), Gaps = 40/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
            Y   + +   RD      +L L      + ++G+  W   G    + +   IR++  + 
Sbjct: 230 NYLFMLEEAEKRDHRKIGKELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKN 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G IE+  P L    LW  SG +  +  +M  L + +DK +   P +      IF+  IKS
Sbjct: 288 GYIEVKTPVLVDKSLWEASGHWAKFRCDMFTL-ETDDKTLALKPMNCPCHVQIFKQGIKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +  L  R+E      G+MR R  +  DA+ F    + +  +  +       
Sbjct: 347 YRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCAEEQITDETV-RFCKLLTE 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   I ++          + E                   D    +  T  +   
Sbjct: 406 VYKDFGFTDIKVKFSDRSEICAGNDE-----------------VWDKAENALKTAIEKAG 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            + ++     A Y    +     L D++    +     ++    F    +    + A + 
Sbjct: 449 FIYTLNPGEAAFYGPKIEF---VLTDAIGRQWQCGTLQMD----FVLPER----LDANYI 497

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            A G+      +    +G++     ++   + GK  IW   V     ++ N         
Sbjct: 498 AASGEKKRPVMLHRAILGSLERFIGILIEEYAGKFPIWLAPVQVAIATITN------DLN 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++   L   G     +   ++I  +         P+  ++G +  ++ +V I+   
Sbjct: 552 DYALEVQKTLIDNGVRTDINISPDKINYKIREFSNQKIPIIAVIGKQEQANKQVTIRKLG 611

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           T  +E +S+E++I       SN 
Sbjct: 612 TIEQEILSIEQLIAMIKKENSNY 634


>gi|32035109|ref|ZP_00135161.1| COG0442: Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126209292|ref|YP_001054517.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae L20]
 gi|166980093|sp|A3N3C6|SYP_ACTP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|126098084|gb|ABN74912.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 571

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 130/284 (45%), Positives = 169/284 (59%), Gaps = 19/284 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E     
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAV 239

Query: 236 -------------NTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                          D  +  ++N +VEQ+  P   T      K
Sbjct: 240 AVGERQAPTAEMQLVDTPNAKTINELVEQFNLPIGKTVKTLIVK 283



 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     ++  +  A     +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNVNWERDAAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
            AT +G DGK   + MG YGIG  RVVAA IE  HD +  I   D +APF ++++ +   
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFSEELYRTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++ +      
Sbjct: 544 EYKNRRTGEKQMIAKDQLLAFLKENVK 570


>gi|27468275|ref|NP_764912.1| threonyl-tRNA synthetase 1 [Staphylococcus epidermidis ATCC 12228]
 gi|293366369|ref|ZP_06613048.1| threonine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|38258358|sp|Q8CS74|SYT_STAES RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|27315821|gb|AAO04956.1|AE016748_190 threonyl-tRNA synthetase 1 [Staphylococcus epidermidis ATCC 12228]
 gi|291319494|gb|EFE59861.1| threonine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329733742|gb|EGG70068.1| threonine--tRNA ligase [Staphylococcus epidermidis VCU045]
 gi|329737259|gb|EGG73513.1| threonine--tRNA ligase [Staphylococcus epidermidis VCU028]
          Length = 645

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 150/444 (33%), Gaps = 31/444 (6%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLKMLEERRERDHRKIGKDLELFTNN-QLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +D Y ++M      ++   M+  P +      I+++  
Sbjct: 288 MGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPAMKLDEDEAMVLRPMNCPHHMMIYKNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++     
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIQ 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G +    R            +     D  E          +          D++
Sbjct: 408 DVYKDFGFEDYRFRLS-----YRDPEDKHKYFDDDEM--------WEKAESMLKEASDEL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    DV   ++  ++ + + +S   ++    F    ++      T+
Sbjct: 455 GLTYEEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERFD----LTY 503

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG+ H   +   G+ +         +           +    +I  +NI  H     
Sbjct: 504 IGQDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPMQVEIIPVNIDLH----Y 559

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D    +   L   G  V  DD  E++G +   A +   P Q++VG + V   +V ++   
Sbjct: 560 DYARLLQDELKSQGVRVEIDDRNEKMGYKIREAQMKKIPYQIVVGDQEVEHQEVNVRKYG 619

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           +  +E +  +E I          +
Sbjct: 620 SEKQESVEKDEFIWNVIDEIRLKK 643


>gi|255035014|ref|YP_003085635.1| threonyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
 gi|254947770|gb|ACT92470.1| threonyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
          Length = 647

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 87/437 (19%), Positives = 168/437 (38%), Gaps = 38/437 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD      +L L      +  +G+  WLP G    + + A + + Q+R G + +
Sbjct: 240 MEEAKKRDHRRLGKELELFA-FSEKVGQGLPLWLPKGAMLRERLQAFLSKAQSRAGYVPV 298

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
             P + S DL+V SG +D YGK+  +       D+  +  P +     +I+++  +SY++
Sbjct: 299 ITPHIGSKDLYVTSGHWDKYGKDSFQPIKTPNLDEEYMLKPMNCPHHCEIYKTSPRSYKD 358

Query: 128 LPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP  F +    +R E      G+ R R F   DA+ F   P+  K  + ++    L +F 
Sbjct: 359 LPLRFSEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCR-PDQVKEEFIRVIDLVLYVFK 417

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
            LG      +                  D    + +  KD       S   +      L+
Sbjct: 418 SLGFNDYSAQISLR--------------DPNNKEKYIGKDEDWEKAESAIIEAAAERGLS 463

Query: 247 SIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           ++ E    A Y    D     + D+L    ++    ++         ++       + G+
Sbjct: 464 TVTELGEAAFYGPKLDFM---VRDALGRKWQLGTIQVDY----QLPQRF----QLEYTGS 512

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D + H    +     G+M    A++  +  G+  +W           I I    +   D 
Sbjct: 513 DNQKHRPVMIHRAPFGSMERFTAILIENTAGQFPLW------LSPDQIAILPISEKFADY 566

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E+++ +L       F D   E+IG +   A++   P  +IVG K  ++ K+ ++ +  G
Sbjct: 567 AEEVFFQLQDHDIRGFVDHRDEKIGRKIRDAEVTKVPFMLIVGEKEAAEGKLSVRRKGEG 626

Query: 425 IREDMSLEEVINYASHR 441
               M++EE   +    
Sbjct: 627 DLGSMTIEEFAAFFKKE 643


>gi|52308170|gb|AAU38670.1| ProS protein [Mannheimia succiniciproducens MBEL55E]
          Length = 589

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 123/243 (50%), Positives = 163/243 (67%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L+ V  IIREE
Sbjct: 19  MRTSKYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPSGIRVLEKVKNIIREE 78

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 79  MNKSGAIEVLMPVVQPAELWQESGRWEQYGLELLRFNDRGNRDFVLGPTHEEVITDLVRR 138

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 139 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTKESLQATYDVMYQT 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V       D+    E  +  
Sbjct: 199 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDYAANIELAEAI 257

Query: 241 DII 243
            + 
Sbjct: 258 AVG 260



 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  M
Sbjct: 382 DGKHYFNINWERDVALPKIADLRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGQKYSEAM 441

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
           +AT +G DGK   + MG YGIG  RVVA+ IE  HD +  I   D++APF ++++ +   
Sbjct: 442 NATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGIIWPSDAIAPFTVAIVPMNMH 501

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G +V +DD  E+ G  FA  +L+G P  VI+G K + + ++
Sbjct: 502 KSESVQAYAEELYQTLLAQGVEVIFDDRKERPGVMFADMELIGVPHMVIIGEKNLENGEI 561

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R T  ++ ++ ++++++     +
Sbjct: 562 EYKNRRTSEKQMIAKDQLLDFLKANVN 588


>gi|42523121|ref|NP_968501.1| hypothetical protein Bd1617 [Bdellovibrio bacteriovorus HD100]
 gi|73919772|sp|Q6MML0|SYT_BDEBA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|39575326|emb|CAE79494.1| thrS [Bdellovibrio bacteriovorus HD100]
          Length = 656

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 148/442 (33%), Gaps = 38/442 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
            Y   I +   RD      +L +     ++ + G   +   G    +++   +RE    T
Sbjct: 239 TYLHNIEEAKKRDHRKLGKELGMF--YFNELAPGSPFFTGKGATVYNSLQTYLRELYFET 296

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +   +L+  SG Y +Y + M      +++     P +      ++ S   S
Sbjct: 297 GYQEVITPQIFDVNLFHTSGHYQNYKENMF-FTKVDERDFASKPMNCPSHCLLYNSEKYS 355

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP          R E      G+ R R F   DA+ F    +  +    K      R
Sbjct: 356 YRDLPIKMADFGRLHRYEKSGAMHGLTRVRTFCQDDAHIFCRMDQLQEE-IAKFMNLLNR 414

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++ +LG+ +  +   + P     S E+                  D    +       + 
Sbjct: 415 VYDKLGMGNYKIFLSTRPDNRMGSEEY-----------------WDMAEGALAEALKSLN 457

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               +     A Y    D+      D+L    ++    ++      F           + 
Sbjct: 458 LPFELNPGDGAFYGPKLDIMFV---DALNRPWQLGTLQVDPNLPQAFD--------LKYT 506

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           G D K+H   M    I         I    +      P  + P +++++N+         
Sbjct: 507 GEDNKEHRPVMLHRAILGSLER--FIGVYLEHTAGHLPPWMMPVQVAILNVTDR---VNS 561

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            CE++   L      V +D   E++  +   A L   P  +IVG K      V ++ R  
Sbjct: 562 FCEELQNSLKGHSVRVEFDRRNEKLNYKIREAQLQKIPYMIIVGDKEAESRTVSLRLRDG 621

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              + +++++V+N  +      
Sbjct: 622 SEHKGLTVDQVMNLITTDIKTR 643


>gi|17987198|ref|NP_539832.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|256044731|ref|ZP_05447635.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|260564073|ref|ZP_05834559.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|265991152|ref|ZP_06103709.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|22654120|sp|Q8YH89|SYT_BRUME RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|17982868|gb|AAL52096.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|260154089|gb|EEW89181.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|263001936|gb|EEZ14511.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 658

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 152/445 (34%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 233 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 HGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLQIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 411 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 457

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 458 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 508

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 509 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 562

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 563 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 620

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 621 NMRRLGSRDQESMTLDEAIARLCEE 645


>gi|86143057|ref|ZP_01061479.1| threonyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
 gi|85830502|gb|EAQ48961.1| threonyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
          Length = 648

 Score =  240 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 150/437 (34%), Gaps = 40/437 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T    +  +G+  WLP G    + +   ++  Q + G   +  P
Sbjct: 238 AKKRDHRKLGKELQLFT-FSQKVGQGLPLWLPKGAALRERLENFLKAAQKKAGYEMVVSP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG Y  YG++  +        +  +  P +     +IF +   SYR+LP 
Sbjct: 297 HIGQKELYVTSGHYAKYGEDSFQPITTPAEGEEFLLKPMNCPHHCEIFNATQWSYRDLPK 356

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +    +R E      G+ R R F   DA+ F  TP+     + K+    L +F  LG
Sbjct: 357 RFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPDQLDDEFMKVIDLVLYVFGSLG 415

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            ++   +                  D    + +   D       +   +      LN +V
Sbjct: 416 FENFTAQVSLR--------------DPENKEKYIGTDENWAKAENAIINAAKAKGLNYVV 461

Query: 250 E-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATFKGAD 306
           E    A Y    D     + D+L  + ++    ++      F    K S           
Sbjct: 462 ETGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLPERFELAYKGSDNE-------- 510

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            +   V +     G+M    A++     G   +W        ++L       +   +  +
Sbjct: 511 -EHRPVMIHRAPFGSMERFVAILLEHTGGNFPLWLMPEQATVLTL------SENYENYAQ 563

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L         DD GE +G +   A++   P  +I+G K  +D  V ++       
Sbjct: 564 NVLTLLENHDVRATIDDRGETMGRKIREAEMQKTPYMLIIGEKEANDGTVSVRKHGGEDL 623

Query: 427 EDMSLEEVINYASHRFS 443
             M++ +         +
Sbjct: 624 GTMTVADFAKIIEAEIA 640


>gi|62289987|ref|YP_221780.1| threonyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82699915|ref|YP_414489.1| threonyl-tRNA synthetase [Brucella melitensis biovar Abortus 2308]
 gi|189024229|ref|YP_001934997.1| threonyl-tRNA synthetase [Brucella abortus S19]
 gi|254689295|ref|ZP_05152549.1| threonyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|254697431|ref|ZP_05159259.1| threonyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730329|ref|ZP_05188907.1| threonyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|256257545|ref|ZP_05463081.1| threonyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|260545263|ref|ZP_05821004.1| threonyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260883825|ref|ZP_05895439.1| threonyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|73919775|sp|Q57D65|SYT_BRUAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123740930|sp|Q2YQ07|SYT_BRUA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238689368|sp|B2S5S6|SYT_BRUA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|62196119|gb|AAX74419.1| ThrS, threonyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82616016|emb|CAJ11049.1| tRNA synthetases, class-II (G, H, P and S):Prolyl-tRNA synthetase,
           class IIa:Threonyl-tRNA synthetase, class IIa:TGS
           domain:A [Brucella melitensis biovar Abortus 2308]
 gi|189019801|gb|ACD72523.1| threonyl-tRNA synthetase [Brucella abortus S19]
 gi|260096670|gb|EEW80545.1| threonyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260873353|gb|EEX80422.1| threonyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
          Length = 658

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 153/445 (34%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 233 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 HGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +    +  
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLHIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 411 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 457

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 458 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 508

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 509 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 562

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 563 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 620

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 621 NMRRLGSRDQESMTLDEAIARLCEE 645


>gi|254693779|ref|ZP_05155607.1| threonyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|261214058|ref|ZP_05928339.1| threonine-tRNA ligase [Brucella abortus bv. 3 str. Tulya]
 gi|260915665|gb|EEX82526.1| threonine-tRNA ligase [Brucella abortus bv. 3 str. Tulya]
          Length = 658

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 153/445 (34%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 233 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 HGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +    +  
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLHIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 411 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 457

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 458 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 508

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 509 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 562

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 563 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 620

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 621 NMRRLGSRDQESMTLDEAIARLCEE 645


>gi|264679166|ref|YP_003279073.1| threonyl-tRNA synthetase [Comamonas testosteroni CNB-2]
 gi|262209679|gb|ACY33777.1| threonyl-tRNA synthetase [Comamonas testosteroni CNB-2]
          Length = 687

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 140/442 (31%), Gaps = 36/442 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    I +HS G   W P G      V   +R      G
Sbjct: 279 YLFRLEEAEKRDHRKLGRELDLF--HIDEHSPGTVFWHPKGWAVWQQVEQYMRRVYQDNG 336

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D Y + M    D   +     P +      IF+  IKSY
Sbjct: 337 YQEVKAPQILDKGLWEKTGHWDKYRENMFT-TDSEKREYALKPMNCPGHIIIFKQGIKSY 395

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +     R+E      G+MR R F   D + F  T +  +           ++
Sbjct: 396 RDLPLRFGEFGNCHRNEPTGSLHGIMRVRAFTQDDGHIFC-TEDQIQAEVTAFTSLLQKV 454

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +I  R  + P     + E                   D    +          
Sbjct: 455 YADFGFTNILYRLSTRPEKRIGTDE-----------------AWDKAENALAEGLRASGC 497

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    +     L D+L    +     ++              + A F G
Sbjct: 498 EFEYLPGEGAFYGPKIEY---TLKDALGREWQCGTIQVDPNMP--------ERLDAEFVG 546

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +    +G++     ++   H G    W          L    A     ++
Sbjct: 547 EDGERHRPIMLHRAILGSLERFIGILVEHHSGALPAWL--APVQAAVLNITDAQADYAQE 604

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L      V  D   E+I  +     +   P  ++ G K  +   V ++ R  
Sbjct: 605 VAQKLQKALPNQSLRVVTDLRNEKITYKIREHSMQKLPYILVAGDKEKAAGAVAVRARGN 664

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MS++  I   +   +  
Sbjct: 665 KDLGVMSVDAFIELLAKDIAAK 686


>gi|218885229|ref|YP_002434550.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226699140|sp|B8DNM5|SYP_DESVM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218756183|gb|ACL07082.1| prolyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 575

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 132/279 (47%), Positives = 175/279 (62%), Gaps = 2/279 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  ++P L+E P DAE+ SHKL+ R GMI + + GIY ++PLG KA++   AI+REE
Sbjct: 1   MRWSNCYIPTLKEAPADAEVVSHKLLTRAGMIRKLTSGIYIYMPLGLKAIEKTAAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+S+P +Q ADLW ESGR++ YGKE+LR  DRN +    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGALELSMPMVQPADLWQESGRWEFYGKELLRFQDRNGRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G+  SY  M+ +
Sbjct: 121 EVRSYRQLPINLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDRDEAGADKSYWAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP--IPSENTD 238
           Y  +F RLGL+   + A+SG IGG  SHEF+VLADTGE  +              +E   
Sbjct: 181 YQNVFKRLGLRFRAVEADSGSIGGSFSHEFMVLADTGEDTIAACTGCQYAANVERAEVAP 240

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
                +L ++      P      V     F  +P++  V
Sbjct: 241 PAVPATLPAVGAIEEVPTPGKHTVEEVCAFLGVPQSALV 279



 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 101/189 (53%), Gaps = 2/189 (1%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A     +D+      D+ P   +     RGIEVGH+F  GTKYS P+  TF   DGK+ 
Sbjct: 375 DAKIERYADLRVITPADACPRCGQPIELTRGIEVGHVFKLGTKYSEPLKCTFLDEDGKEK 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MG YGIG  RVVA+ IE +HD  GI++P  +APF+  L  +   +       E+ YA
Sbjct: 435 VMVMGCYGIGVSRVVASCIEQNHDADGIVFPPPIAPFEAVLCCLDPKNGETLGKAEEFYA 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G DV  DD  E+ G +F  ADL+G PLQ++VG K ++   VE K R TG + ++ 
Sbjct: 495 ELKAQGVDVILDDRDERPGVKFKDADLVGMPLQLVVGGKGLARGIVEAKDRRTGEKTELP 554

Query: 431 LEEVINYAS 439
           +E       
Sbjct: 555 VEGFAEAFR 563


>gi|150024985|ref|YP_001295811.1| threonine--tRNA ligase [Flavobacterium psychrophilum JIP02/86]
 gi|166223340|sp|A6GY22|SYT_FLAPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|149771526|emb|CAL42995.1| Threonine--tRNA ligase [Flavobacterium psychrophilum JIP02/86]
          Length = 648

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 159/446 (35%), Gaps = 41/446 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E  R D      +L L      +  +G+  WLP G    D +   +++ Q + G
Sbjct: 229 YLELLEEAKRRDHRKLGKELELFA-FSQKVGQGLPLWLPKGAALRDRLEQFLKKAQKKGG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             ++  P +   +L+V SG Y  YG +  +        +  +  P +     +I+     
Sbjct: 288 YEQVVTPHIGQKELYVTSGHYAKYGADSFQPISTPTEGEEFLLKPMNCPHHCEIYNVRPW 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP  + +    +R E      G+ R R F   DA+ F  TP+     + K+    L
Sbjct: 348 SYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPDQLDEEFKKVIDLVL 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  LG ++   +                  D      +   D       +   +    
Sbjct: 407 YVFGSLGFENFTAQISLR--------------DKENRDKYIGSDENWEKAENAIINAARD 452

Query: 243 ISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            +LN++VE    A Y    D     + D+L  + ++    ++                 T
Sbjct: 453 KNLNTVVEYGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERFELT 501

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +KG+D + H    +     G+M    A++     G   +W        + L         
Sbjct: 502 YKGSDDQLHRPVMIHRAPFGSMERFIAILLEHTAGNFPLWLMPEQAIILCL------SDK 555

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +K+   L         D+  E IG +   A++   P  +IVG +   ++ + I+ 
Sbjct: 556 YEIYAKKVLNLLENHEIRALIDNRNESIGRKIRDAEMQKTPFMLIVGEEEEKNNTISIRR 615

Query: 421 RLTGIRE--DMSLEEVINYASHRFSN 444
                +    +++EE     +   S 
Sbjct: 616 HGQEGKGNITVTIEEFARIVNDEISK 641


>gi|312794183|ref|YP_004027106.1| prolyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181323|gb|ADQ41493.1| prolyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 572

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 122/265 (46%), Positives = 162/265 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRSGAQEVHMSALMPKELWEESGRWAVFGPEMFRIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  +G   SY KM+ +
Sbjct: 121 EITSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDIDEKGLDISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++   K         +    D
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYCKSCGYAANLEKAECLD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
             +  N  +++    Y        E
Sbjct: 241 TPVENNEELKEKQEVYTPNVRTIEE 265



 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 70/194 (36%), Positives = 106/194 (54%), Gaps = 4/194 (2%)

Query: 256 YAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
               +D+ N    D  P+    K    RGIEVGHIF  GTKY+   +  +    G+   +
Sbjct: 375 VTKFADLRNITQDDLCPKCRSQKVTIERGIEVGHIFKLGTKYTQAFNCVYTDEKGEKKLM 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R  AA+IE  HD  GIIWP +VAP+++ ++ +  +D+       +IY +L
Sbjct: 435 IMGCYGIGINRTAAAIIEQMHDEDGIIWPITVAPYEVIVVPVNVNDENQNKIAFEIYEKL 494

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K G +V  DD  E+ G +F  ADL+G P +V VG K VS+ K+EI++R T    ++ +E
Sbjct: 495 QKNGVEVLIDDRDERAGVKFKDADLIGIPFRVTVGKK-VSEGKLEIRNRRTKESFEVEIE 553

Query: 433 EVINYASHRFSNNR 446
           + I +  +     +
Sbjct: 554 KAIEFVINLIKEEK 567


>gi|254462954|ref|ZP_05076370.1| threonyl-tRNA synthetase [Rhodobacterales bacterium HTCC2083]
 gi|206679543|gb|EDZ44030.1| threonyl-tRNA synthetase [Rhodobacteraceae bacterium HTCC2083]
          Length = 643

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 75/435 (17%), Positives = 150/435 (34%), Gaps = 39/435 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      ++ L      + + G   W P G +    + A +R  Q+  G 
Sbjct: 237 LTFLEEAAKRDHRKLGREMGLF--HFEEVAPGSVIWHPNGWRVFQTLIAYMRRRQDVAGY 294

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +E++ P +    LW  SG + +Y + M     ++D+     P +      ++   ++SYR
Sbjct: 295 VEVNTPDIMDRALWETSGHWFNYKENMFLAQTQDDRDYALKPMNCPGHMMVYNHSLRSYR 354

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R E      G++R R F   DA+ +    + +           L I+
Sbjct: 355 DLPVKIAEFGKVHRYEPSGALHGLLRVRSFTQDDAHIYCSPEQLTDECLKVN-DLILSIY 413

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G + + ++  + P     S E                   D    +  T  +     
Sbjct: 414 KDFGFEDVHVKLSTRPENRIGSDE-----------------SWDLSEGALKTALERAGMS 456

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
            +I E   A Y    +     L D++  + +     ++      FG+        T+  A
Sbjct: 457 YTIFEGEGAFYGPKLEY---VLRDAIGRDWQCGTLQVDYNLPERFGS--------TYVSA 505

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            G+    V +     G++     ++  + +GK   W         S+I          D 
Sbjct: 506 SGEKLAPVMLHRALFGSLERFIGILIENWEGKLPFWLAPRQVVVASII------SDADDY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +    L   G     D   E+I  +     +   P+ + +G++ V +  V ++     
Sbjct: 560 VYEAVDALKAAGVQAEADIRNEKINYKVREHSVGKVPVILAIGAREVEERTVTVRRLGEK 619

Query: 425 IREDMSLEEVINYAS 439
             +  +LE VI+  S
Sbjct: 620 QTKVEALESVISALS 634


>gi|260754807|ref|ZP_05867155.1| threonine-tRNA ligase [Brucella abortus bv. 6 str. 870]
 gi|260758029|ref|ZP_05870377.1| threonine-tRNA ligase [Brucella abortus bv. 4 str. 292]
 gi|260761852|ref|ZP_05874195.1| threonine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|297248387|ref|ZP_06932105.1| threonyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
 gi|260668347|gb|EEX55287.1| threonine-tRNA ligase [Brucella abortus bv. 4 str. 292]
 gi|260672284|gb|EEX59105.1| threonine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674915|gb|EEX61736.1| threonine-tRNA ligase [Brucella abortus bv. 6 str. 870]
 gi|297175556|gb|EFH34903.1| threonyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
          Length = 660

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 153/445 (34%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 235 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 292

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 293 HGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 352

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +    +  
Sbjct: 353 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLHIN 412

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 413 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 460 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 510

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 511 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 564

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 565 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 622

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 623 NMRRLGSRDQESMTLDEAIARLCEE 647


>gi|329115645|ref|ZP_08244367.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
 gi|326695073|gb|EGE46792.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
          Length = 645

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 150/438 (34%), Gaps = 41/438 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      ++ L      + + G   W   G +    +   +R  Q R G 
Sbjct: 235 LHQLEEAEKRDHRRIGKEMGLF--HFQEEAVGQVFWHAKGWRLYTALQDYMRRAQTRHGY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            E+  P L    LW  SG +D Y   M     +  +K +   P +      IFR  ++SY
Sbjct: 293 QEVRTPQLVDRALWEASGHWDKYRHHMFIATVEDENKTLALKPMNCPCHVQIFRHGLRSY 352

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R E      G+MR R F   DA+ F    + +  +  +       +
Sbjct: 353 RELPLRMAEFGACHRYEPSGALHGLMRVRGFTQDDAHIFCTEDQIADETV-RFVKMLHDV 411

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +  LG + + ++    P     S E                   D    +          
Sbjct: 412 YQDLGFEHVRVKFADRPEQRAGSDE-----------------VWDKAENALKEACTVAGV 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D++  + +     +++             + A++ G
Sbjct: 455 EYEHNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVDLVLP--------ERLDASYIG 503

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D G+   V +    +G+      ++   H G+  +W   V     S++           
Sbjct: 504 EDSGRHRPVMLHRAILGSFERFLGILIEQHAGRFPLWLAPVQVVVASIV------SDAAP 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++ A L + G  V  D   ++I ++     +   P+ ++VG +   +  V ++   T
Sbjct: 558 YAEEVAAALREAGLAVEADVRNDKINAKVREHSVARVPVILVVGRREAEERTVAMRRLGT 617

Query: 424 GIREDMSLEEVINYASHR 441
             +E +SL + +    + 
Sbjct: 618 QAQETLSLNDAVARLKNE 635


>gi|146276901|ref|YP_001167060.1| threonyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
 gi|166225490|sp|A4WQU1|SYT_RHOS5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145555142|gb|ABP69755.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 646

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 149/443 (33%), Gaps = 45/443 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L    + + + G+  W P G +    +   +R    +
Sbjct: 234 KAYLHMLEEAAKRDHRKLGKEMELF--HLQEEAPGMVFWHPNGWQIYRTLEDYMRGRLRK 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIF 118
            G  E+  P +    LW  SG +++Y + M  +    + A         P +      ++
Sbjct: 292 AGYKEIRTPQVVDRKLWEASGHWEAYKENMFLVEVEEEHAKEKRINALKPMNCPCHVQVY 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F+  DA+ F  T +  +      
Sbjct: 352 NQGLKSYRDLPLRLAEFGSCHRYESSGSMHGLMRVRGFVQDDAHIFC-TEDQIEGECAAF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++  LG  S  ++  + P     S E     +T                 +   
Sbjct: 411 IELLSSVYKDLGFDSFEIKLSTRPEVRIGSDEAWDKVET-----------------ALEN 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               + +   I     A Y    D    KL D++    +     ++       G      
Sbjct: 454 AIKKVGAAYEIDPGEGAFYGPKLDF---KLTDAIGRKWQCGTFQVDPNLPTRLG------ 504

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G DG  H    +    +G+      ++  ++ GK   W         S++    
Sbjct: 505 --AEYIGEDGAKHRPYMLHRAILGSFERFIGILIENYAGKLPFWLAPRQVVVASIV---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     ++ A L   G     D   E+I  +     +   P+ + +G + V    V
Sbjct: 559 --SDADPYVAEVVAALRARGVRAEADTRNEKINYKVREHSVGKVPVILAIGMQEVEGRTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
            ++       E   L++V+   +
Sbjct: 617 SVRRLGETGTESAPLDQVVERLA 639


>gi|312128280|ref|YP_003993154.1| prolyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311778299|gb|ADQ07785.1| prolyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 572

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 122/265 (46%), Positives = 163/265 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRSGAQEVHMSALMPKELWEESGRWAVFGPEMFRIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  +G   SY KM+ +
Sbjct: 121 EISSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDIDEKGLDISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++   K         +    D
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYCKACGYAANLEKAECLD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
           + +  N  +++    Y        E
Sbjct: 241 EPVENNEELKEKQEVYTPNVRTIEE 265



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/194 (35%), Positives = 104/194 (53%), Gaps = 4/194 (2%)

Query: 256 YAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
               +D+ N    D  P+    K    RGIEVGHIF  GTKY+   +  +    G+   +
Sbjct: 375 VTKFADLRNITQDDLCPKCRSQKVTIERGIEVGHIFKLGTKYTQAFNCVYTDEKGEKKLM 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R  AA+IE  HD  GIIWP +VAP+++ ++ +   D+       +IY  L
Sbjct: 435 IMGCYGIGINRTAAAIIEQMHDEDGIIWPITVAPYEVIVVPVNVKDENQNKIAFEIYENL 494

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K G +V  DD  E+ G +F  ADL+G P +V VG K +S+ K+EI++R T    ++ +E
Sbjct: 495 QKNGVEVLIDDRDERAGVKFKDADLIGIPFRVTVGKK-ISEGKLEIRNRRTKESFEVEIE 553

Query: 433 EVINYASHRFSNNR 446
           + I +  +     +
Sbjct: 554 KAIEFVMNLIKEEK 567


>gi|85858497|ref|YP_460699.1| threonyl-tRNA synthetase [Syntrophus aciditrophicus SB]
 gi|85721588|gb|ABC76531.1| threonyl-tRNA synthetase [Syntrophus aciditrophicus SB]
          Length = 645

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 154/438 (35%), Gaps = 41/438 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L IL+E   RD       L L      +   G+  + P G      +    ++E  R G
Sbjct: 241 YLKILEEAKKRDHRKLGKDLDLFQV-SEEAGAGLIIFHPKGTILRTIIEDWEKKEHLRRG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DLW +SG +D Y + M    +   ++    P +      I+++ I+SY
Sbjct: 300 YDMVMGPQILKVDLWKKSGHFDHYRENM-YFTEVEGQSYGIKPMNCLSHMLIYKTKIRSY 358

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  ++++    R E      G++R+R+F   DA+      + +     +    ++  
Sbjct: 359 RDLPIRYFELGTVHRHEKTGVLHGLLRARQFTQDDAHILCTPEQLNSE--IRAIADFVGY 416

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++      +   + P                      S    +    +      D   
Sbjct: 417 AMKIFGFEYEVELSTRPDNS-----------------IGSDQDWELATSALENALKDNQM 459

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D    KL D+L    + +    +    F    ++      T+ G
Sbjct: 460 TYDINEGDGAFYGPKIDF---KLKDALKRKWQCATIQCD----FTLPERFD----LTYVG 508

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +    +GA+     V+   + G   +W   V    +S+            
Sbjct: 509 ADGEKHRPVMLHRVILGAIERFMGVLIEHYGGAFPVWLAPVQAILLSVT------DRHIP 562

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +Y +L   G  V  D   E++G +   A     P  +++G K ++  +V ++ R  
Sbjct: 563 YGKTVYQQLMDAGIRVEGDFRNEKLGYKIREAQTQKIPYMLVIGDKEMASGEVAVRQRGG 622

Query: 424 GIREDMSLEEVINYASHR 441
                + +   I     +
Sbjct: 623 DNLGTLPVSAFIELVKEK 640


>gi|223984594|ref|ZP_03634721.1| hypothetical protein HOLDEFILI_02017 [Holdemania filiformis DSM
           12042]
 gi|223963441|gb|EEF67826.1| hypothetical protein HOLDEFILI_02017 [Holdemania filiformis DSM
           12042]
          Length = 590

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 151/443 (34%), Gaps = 39/443 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
            Y   + +   RD +    +L L   M+ ++  G   +LP G    + +     EE  + 
Sbjct: 182 NYLNFLEEAKKRDHKKLGRELDLF--MMSEYGPGFPFFLPNGMILRNVLENYWYEEHTKE 239

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + S DLW  SG + +Y   M      +D+     P +      ++++ + S
Sbjct: 240 GYQFIKTPIMLSKDLWELSGHWANYQDNMYTTM-IDDREFAIKPMNCPGGILVYKNGLHS 298

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y++LP    ++    R E      G+ R R F   DA+ F    +       ++     R
Sbjct: 299 YKDLPLRIGELGQVHRHEASGALNGLFRVRTFTQDDAHIFMREDQIESE-VVRLINFIDR 357

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   GL        + P                E +   S +  D    +         
Sbjct: 358 VYSVFGLSYEI-ELSTRP----------------EKKYIGSIEIWDKAEAALEAACHAAG 400

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I     A Y    D H   L DSL    +     +++                T+ 
Sbjct: 401 KACKINPGDGAFYGPKLDFH---LTDSLGRVWQCGTIQLDMNLP--------ERFDLTYV 449

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            ADG K   + +     G++     ++   + G   +W          ++ +  H +   
Sbjct: 450 DADGSKKRPIMLHRVIFGSIERFIGILIEHYAGAFPMWLA-----PQQVVIVPVHHERHL 504

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +++ A L   G  V  D   E++G +   A     P+Q++VG   V ++   ++   
Sbjct: 505 DYAKELEAMLLAKGVRVKVDGRNEKLGYRVREAQTHKIPMQIVVGDGEVENNTATVRRYG 564

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 +S EE++    +     
Sbjct: 565 KKDSVTLSKEELLESILNEIETK 587


>gi|88798124|ref|ZP_01113711.1| prolyl-tRNA synthetase [Reinekea sp. MED297]
 gi|88779321|gb|EAR10509.1| prolyl-tRNA synthetase [Reinekea sp. MED297]
          Length = 573

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 139/389 (35%), Positives = 194/389 (49%), Gaps = 19/389 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  ++E P DA I SHKLMLR G++ + + G+Y+WLP G++ L+ +  IIREE
Sbjct: 1   MRASRYLLATVKETPADAVIVSHKLMLRAGLVRKLASGLYNWLPTGRRVLNKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +PT+Q A+LW ESGR D    +ML++ DR+ +  +YGPTHEEV+TDI R+
Sbjct: 61  LDRSGAQEVLMPTIQPAELWEESGRIDKMEGQMLKMQDRHQRDFVYGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE RPRFGVMRSREF+MKD YSF +  E     Y+ M+ +
Sbjct: 121 ELTSYKQLPMNFYQIQNKFRDEFRPRFGVMRSREFVMKDGYSFHVDQECLNKEYDNMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP--------- 231
           Y RIF RLGL   P+ A++G +GG  SHEF VLAD+GE  +  S D              
Sbjct: 181 YCRIFDRLGLDYRPVLADTGAMGGSASHEFQVLADSGEDYIVYSTDSSYAANIEQAEAPM 240

Query: 232 ---------IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                          D  +  ++  +V Q+  P   T      K  D +  +        
Sbjct: 241 PAGERAAPTAEMTEVDTPNAKTIEDLVSQFGLPIEKTVKTLMVKASDEVDSDLVALLIRG 300

Query: 283 EVGHIFYFGTK-YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +         K   +    T    +     +  G   +G +      I      K   + 
Sbjct: 301 DHELNEVKAEKLPQVAAPLTMATDEEIRAVMGAGPGSLGPVNASVPCIIDRTVSKMSDFG 360

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYA 370
                      NI     V   A E +  
Sbjct: 361 AGANIDGKHYFNINWERDVALPAVEDLRN 389



 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 109/206 (52%), Gaps = 5/206 (2%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     +I  +      A  D+ N    D  P+ +      +GIEVGHIF  G  YS  +
Sbjct: 366 DGKHYFNINWERDVALPAVEDLRNVVEGDPSPDGQGTLKILKGIEVGHIFQLGDTYSKSL 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
            A     +GK   +QMG YGIG  R+VAA IE +HD  GIIWPD++APF + ++ + A  
Sbjct: 426 KAEVLDQNGKSQAMQMGCYGIGVTRIVAAAIEQNHDENGIIWPDAIAPFHVGIVPLNAHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                +  EK+YA L   G DV  DD  +    G +FA  +L+G P +++V  + ++D K
Sbjct: 486 SPEVMEVAEKLYADLQAAGYDVLLDDRDKKTSPGVKFADMELVGVPHRIVVSDRGLADGK 545

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           VE K R    +E+++L +++ +   +
Sbjct: 546 VEYKARRASDKEEIALTDILAHIQQQ 571


>gi|116252274|ref|YP_768112.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841]
 gi|123261550|sp|Q1MGA7|SYT_RHIL3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115256922|emb|CAK08016.1| putative threonyl-tRNA synthetase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 661

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 142/441 (32%), Gaps = 41/441 (9%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      ++ L      +   G+  W   G +    + A +R       
Sbjct: 234 YLHMLAEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHGKGWRVFQTLVAYMRRRL-AGD 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG +  Y   M ++        +D+     P +      IF+ 
Sbjct: 291 YQEVNAPQVLDKSLWETSGHWGWYRDSMFKVTVAGDDTDDDRVFALKPMNCPGHIQIFKH 350

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR LP    +     R E      G+MR R F   DA+ F    + +         
Sbjct: 351 GLKSYRELPIRLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKIN-D 409

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L ++   G   + ++  + P     S E    A++    V             E    
Sbjct: 410 LILSVYKDFGFDEVTIKLSTRPDKRVGSDELWDRAESVMMGVL------------ETIQQ 457

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   I+    A Y    +     L D++    +     ++      FG        
Sbjct: 458 QSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG-------- 506

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +  ++ +      +     G+M     ++  +  G   +W   +     ++       
Sbjct: 507 AFYIDSNSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLWVSPLQVVVATIT------ 560

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   L + G +V  D   E+I  +     +   P+ ++ G K   +  V I
Sbjct: 561 SEADAYGLEVAEALREAGLNVETDFRNEKINYKIREHSVTKVPVIIVCGRKEAEERTVNI 620

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           +   +  +  M L+  +   +
Sbjct: 621 RRLGSQDQVSMGLDAAVESLA 641


>gi|329767326|ref|ZP_08258851.1| threonyl-tRNA synthetase [Gemella haemolysans M341]
 gi|328836015|gb|EGF85706.1| threonyl-tRNA synthetase [Gemella haemolysans M341]
          Length = 647

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 157/446 (35%), Gaps = 35/446 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++ + + +   RD      +L + T    +   G+  WLP G      +   I +++ 
Sbjct: 228 MEQHLVRLQEARERDHRKLGKELGIFTT-SQKVGAGLPLWLPNGATIRRTIERYIVDKEV 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P + S DL++ SG +D Y ++M    + + + M+  P +      ++++  
Sbjct: 287 ELGYDHVYTPIMGSKDLYITSGHWDHYQEDMFPPMEMDHETMVLRPMNCPHHMMVYKNER 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++ +  R E       ++    +  +     + P+  K  +        
Sbjct: 347 HSYRELPIRIAELGMMHRYEASGAVSGLQRVRGMTLNDAHIFVRPDQLKDEFKLTVGLIE 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDD 241
             +  LG+K+   R                  D   T+ +   D   +          D+
Sbjct: 407 EAYKDLGIKNFSYRLS--------------YRDPENTEKYFDDDAMWNNAQQMLKETADE 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    DV  E    ++ + + +S   ++    F    ++       
Sbjct: 453 LGLDYVEAEGEAAFYGPKLDVQVET---AIGKQETLSTIQLD----FLLPERF----ELE 501

Query: 302 FKGADGKDHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DGK H   +   GI     R+VA ++E            +          I  ++ 
Sbjct: 502 YIGEDGKAHRPVVIHRGIVSTMERMVAFLLEEYKGDLPTWLSPNQVRI------IPVNND 555

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  ++I   L K G  V  DD  E++G +   A     P  +++G K V +  V ++
Sbjct: 556 YHYDYSKEIMQELKKAGVKVAIDDRDEKLGYKIREAASKKIPYTLVIGDKEVENRNVNVR 615

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
              +  +++ S  E         +  
Sbjct: 616 TFGSHDQKEESFAEFKENILKEINER 641


>gi|213403436|ref|XP_002172490.1| threonyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
 gi|212000537|gb|EEB06197.1| threonyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
          Length = 699

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 78/453 (17%), Positives = 145/453 (32%), Gaps = 35/453 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+Y   + +   RD      +  L     H+ S G   +LP G +  + + A IRE+  
Sbjct: 272 MSEYKKFLAEAAKRDHRKIGREQDLF--FFHELSPGSCFFLPHGARIYNQLIAWIREQYK 329

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P + + DLW  SG +++Y + M       DK     P +      I++S  
Sbjct: 330 IRGFQEVITPNMYNVDLWKTSGHWNNYAENMFSFEIEKDK-FALKPMNCPGHCLIYKSRD 388

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP+      +  R+E      G+ R R F   DA+ F    +         F   
Sbjct: 389 RSYRDLPWRCADFGVLHRNEFSGALTGLTRVRRFQQDDAHIFCRPDQVRSE-IENCFDFL 447

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G     +   + P                E +     +  +          D 
Sbjct: 448 KYVYGVFGFTF-HLELSTRP----------------EEKYLGDLETWNKAEAQLKAALDA 490

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS-LPMSA 300
                 + E   A Y    D+    +FD+L    + +   ++    F    ++       
Sbjct: 491 SGYEWELNEGDGAFYGPKIDI---TVFDALKRQHQCATIQLD----FQLPERFELEFHGT 543

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW-PDSVAPFKISLINIKAHDQ 359
           T                 +   R +   +E         +            +++     
Sbjct: 544 TEGDEAADSTNKNKYIRPVMIHRAILGSVERMIAILTEHYGGKWPFWLSPRQVSVVPVSA 603

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+  RL   G     D     +  +   A L  +    +VG++    + V I+
Sbjct: 604 AAFDYANKVQKRLFDAGLFADVDTSDNTLPKKIRNAQLSQYNFIFVVGAEEEKTNSVNIR 663

Query: 420 HRLTGIRE----DMSLEEVINYASHRFSNNRPV 448
           +R    ++     + L+EV+           PV
Sbjct: 664 NRDDPKKQAKTATVPLDEVVAKLVALKETKNPV 696


>gi|262376731|ref|ZP_06069959.1| prolyl-tRNA synthetase [Acinetobacter lwoffii SH145]
 gi|262308441|gb|EEY89576.1| prolyl-tRNA synthetase [Acinetobacter lwoffii SH145]
          Length = 572

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 119/253 (47%), Positives = 169/253 (66%), Gaps = 1/253 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L+ V AI+REE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGVRVLNKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G++++ +P  Q A LW ESGRY  YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MDKVGSLQVYMPVTQPASLWEESGRYVQYGPELLRFNDRHGNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQ+Q KFRDE+RPRFGVMRSREF+MKDAYSF    E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPANFYQVQTKFRDEIRPRFGVMRSREFIMKDAYSFHANQESLQQTYDDMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RLGL   P++A++G IGG  SHEF VLA +GE  +       D+    E  +  
Sbjct: 181 YCKIFTRLGLNFRPVQADTGSIGGSGSHEFHVLASSGEDDIAF-STESDYAANIEMAEAV 239

Query: 241 DIISLNSIVEQWT 253
            +    + +++  
Sbjct: 240 LVGERAAPIQELK 252



 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 71/193 (36%), Positives = 102/193 (52%), Gaps = 3/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A +    D+ N    D  P+ K      RGIEVGHIF  G KYS  +     G DGK
Sbjct: 380 ERDAQFTEVYDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGQKYSEALGCKVLGEDGK 439

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              V MG YGIG  RVVA+ IE + D KGIIWP ++APF+++++ + A       +A E 
Sbjct: 440 PFTVTMGCYGIGVTRVVASAIEQNFDEKGIIWPTAIAPFEVAIVPMNAHKSPRTMEAAEA 499

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA L   G DV  DD  E+ G +F+  +L G P ++++G K +     E K R      
Sbjct: 500 LYAELQAAGFDVLLDDRNERPGVKFSDLELTGIPHRIVIGEKGLDAGTFEYKGRRDAESV 559

Query: 428 DMSLEEVINYASH 440
           ++S EE++   + 
Sbjct: 560 NISKEELLAKIAK 572


>gi|300214322|gb|ADJ78738.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Lactobacillus salivarius CECT 5713]
          Length = 649

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 152/443 (34%), Gaps = 37/443 (8%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           L   +E   RD  +  ++L L    +  +   G+  W+P G      +   I +++   G
Sbjct: 235 LQRQKEARERDHRVIGNELDLF--FVDPKVGAGLPYWMPNGATIRRVIERYIIDKEVAWG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKS 124
              +  P L + +L+ +SG +D Y ++M    D  D  M    P +      ++  H +S
Sbjct: 293 FQHVYTPVLANLNLYKQSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYNHHKRS 352

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    ++ +  R E       +     +  +     + P+  +     +      +
Sbjct: 353 YRELPLRIAELGMMHRYEKSGALTGLSRVREMTLNDGHDFIEPDHIEDEIKTLIKLMTEV 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS-ENTDFDDII 243
           ++   +     R                  D   T+ +   D M     S      DD+ 
Sbjct: 413 YNDFDITDYRFRLS--------------YRDPKNTEKYFDDDEMWEKSQSKLKAAMDDMG 458

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    DV  +    +L   + +S   ++    F    ++       + 
Sbjct: 459 LEYFEAEGEAAFYGPKIDVQTKT---ALGGEETLSTIQLD----FLLPERFD----LKYI 507

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG++H    +    +  M    A +   + G    W          +  I   + +  
Sbjct: 508 GADGEEHRPVMVHRGIVSTMERFTAYLTEMYKGAFPTWLAPHQ-----VDIIPVKNDLHM 562

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D    + ++L   G  V  DD  E++G +   A +   P  +++G + VS+  V ++   
Sbjct: 563 DYVNDLSSKLRAHGIRVTVDDRNEKMGYKIRQAQVNKIPYTLVIGDEEVSNGTVTVRKYG 622

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 M+ +E  N       N 
Sbjct: 623 EEKTNTMTKDEFKNLLFEDIENY 645


>gi|296208047|ref|XP_002750943.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Callithrix jacchus]
          Length = 475

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 144/456 (31%), Positives = 227/456 (49%), Gaps = 44/456 (9%)

Query: 3   RSKYFLPI-LQENP--------RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P  L+E+          D    S +LML+ G+I+  S G Y  LP   +A++ +
Sbjct: 42  LSRVFQPQNLREDQVLSLEGRSGDLTCKSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKL 101

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE 
Sbjct: 102 VRVIDQEMQVIGGQKVNMPSLSPAELWQATNRWDLMGKELLRLRDRHGKEYCLGPTHEEA 161

Query: 114 MT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T  I      SY+ LPF  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ 
Sbjct: 162 ITALIASQKKLSYKQLPFLLYQVTRKFRDEPRPRFGLLRCREFYMKDMYTFDSSPEAAQQ 221

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y+ +  +Y  +F+RLGL+ + ++A  G IGG +SHEF +  D GE  +           
Sbjct: 222 TYSLVCDAYCSLFNRLGLRFVKVQANVGSIGGTMSHEFQLPMDIGEDWLAICPSC----- 276

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                +  A    +   ++     +      +GIEVGH FY GT
Sbjct: 277 ---------------------SFSANMETLDVSQMNCPACQGPLTKTKGIEVGHTFYLGT 315

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F    GK    +MG YG+G  R++AA IE       + WP  +AP++  LI
Sbjct: 316 KYSSIFNAQFTNVYGKPSLAEMGCYGLGVTRILAAAIEVLSTEDCVRWPSLLAPYQACLI 375

Query: 353 NIKA--HDQVCRDACEKIYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
             K    ++   +   ++Y  +++       +V  DD     IG++   A   G+P  +I
Sbjct: 376 PPKKGSKEEAASELAGQLYDHITEAVPQLHGEVLLDDRTHLTIGNRLKDASKFGYPFVII 435

Query: 406 VGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASH 440
            G + + D    E+  + TG    ++ + V++  + 
Sbjct: 436 AGKRALEDPAHFEVWCQNTGEVVFLTKDGVMDLLTQ 471


>gi|158336193|ref|YP_001517367.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|158306434|gb|ABW28051.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 616

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 152/450 (33%), Gaps = 39/450 (8%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIRE 59
           ++ K +L   +E  R D  +    L L +  I      G+  W P G +    +    R+
Sbjct: 203 KQLKAYLHQKEEAQRRDHRLLGKNLKLFS--IEDNAGGGLVFWHPRGARIRQVIETYWRQ 260

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
              + G   +  P + + DLW  SG +D Y   M    +   +A    P +       ++
Sbjct: 261 AHTQGGYELLYTPHMANLDLWKTSGHFDFYRDSMFDQMEVETQAYQIKPMNCPFHVLTYQ 320

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             + SYR  P  + ++   +R E      G+MR R F   DA+ F L  + +      + 
Sbjct: 321 HDLHSYREFPLRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPDQVADE-ILAVL 379

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                +    G +   +   + P     S E                   D       T 
Sbjct: 380 DLTETVLSDFGFRDYEVNLSTRPDKSVGSDE-----------------IWDLATQDLRTA 422

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            D         E   A Y    D+   K+ D++    + S   ++    F    ++ +  
Sbjct: 423 LDRKGWEYLTDEGGGAFYGPKIDL---KIRDAIGRLWQCSTIQVD----FNLPERFKMEY 475

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            A       +   + +     G++     ++  ++ G   +W   V    + +       
Sbjct: 476 VAA---DGTRQRPIMIHRAIFGSLERFFGILIENYAGDFPLWLAPVQIRLLVV------S 526

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              R    ++  +L + G     D  GE++G Q   + L   P+  +VG K V    + I
Sbjct: 527 DAQRPYALEVLEQLQQKGFRAEIDQTGERLGKQIRQSALEKIPVVAVVGQKEVEAQTLNI 586

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           + R +  +E + L E+           + +
Sbjct: 587 RTRHSEEQELLKLPELCEKMQSAIDAKQHI 616


>gi|121593268|ref|YP_985164.1| prolyl-tRNA synthetase [Acidovorax sp. JS42]
 gi|222109990|ref|YP_002552254.1| prolyl-tRNA synthetase [Acidovorax ebreus TPSY]
 gi|152074743|sp|A1W4B3|SYP_ACISJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782898|sp|B9ME00|SYP_DIAST RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120605348|gb|ABM41088.1| prolyl-tRNA synthetase [Acidovorax sp. JS42]
 gi|221729434|gb|ACM32254.1| prolyl-tRNA synthetase [Acidovorax ebreus TPSY]
          Length = 581

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 117/237 (49%), Positives = 160/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SH+LM+R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHQLMMRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E ++P +Q A+LW E+GR+D  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVECTMPVVQPAELWQETGRFDKMGPELLRIHDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD    G+K SY  M  +
Sbjct: 121 ELRSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQAGAKASYQVMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL+   + A+SG IGGDLS EF V+A TGE  +       D+    E  
Sbjct: 181 YRRIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC-PASDYAANMEKA 236



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/188 (38%), Positives = 109/188 (57%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+   +    RGIEVGH+FY GTKYS  M+ATF G DGK  + +MG 
Sbjct: 393 VADLRNVVAGDLSPDGQGELAIERGIEVGHVFYLGTKYSKAMNATFLGEDGKPAFFEMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           YGIG  R+ AA IE +HD +GIIWPD++APF + +  +     +  +   E +YA L   
Sbjct: 453 YGIGVTRLPAAAIEQNHDERGIIWPDAIAPFTVVICPVGMDRSEAVKAQAESLYADLLAA 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD GE+ G+ FA  +L+G P +V +G K + + +VE +HR       + + +++
Sbjct: 513 GVDVILDDRGERPGAMFADWELIGVPHRVTIGDKSLKEGQVEYQHRRDASATKVGVADIL 572

Query: 436 NYASHRFS 443
            +   R +
Sbjct: 573 AHVKERLA 580


>gi|146295842|ref|YP_001179613.1| prolyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|166980111|sp|A4XHN7|SYP_CALS8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145409418|gb|ABP66422.1| prolyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 572

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 123/285 (43%), Positives = 166/285 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P ++E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTMKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +  L   +LW ESGR+  +G EM ++ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRAGAQEVHMSALMPKELWEESGRWAVFGPEMFKIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  EG   SY KM+ +
Sbjct: 121 EVTSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDMNEEGLDISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++   K         +    D
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGSNSHEFMVPSSVGEAEIAYCKACGYAANLEKAECLD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           + +     ++Q    Y        E +     + KR     I   
Sbjct: 241 EPVENTEEIKQMQEVYTPNVRTIEELVNFLNIDAKRFVKTMIYRA 285



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 65/194 (33%), Positives = 104/194 (53%), Gaps = 4/194 (2%)

Query: 256 YAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
               +D+ N    D  P+    K    RGIEVGHIF  GTKY+   +  +    G+   +
Sbjct: 375 VTKFADLRNITQDDLCPKCLSQKVTIERGIEVGHIFKLGTKYTEAFNCVYTDEKGEKKLM 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R  AA+IE  HD  GIIWP +VAP+++ ++ +   D+       +IY  L
Sbjct: 435 IMGCYGIGINRTAAAIIEQMHDEDGIIWPITVAPYEVIVVPVNIKDEQQSKIAFEIYEDL 494

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K G +V  DD  E+ G +F  ADL+G P +V +G K ++D ++E+++R T    ++ +E
Sbjct: 495 QKKGVEVLIDDRDERAGVKFKDADLIGIPFRVTIGRK-IADGRIEVRNRRTKESVEVDIE 553

Query: 433 EVINYASHRFSNNR 446
             + +  +  +  +
Sbjct: 554 SAVEFILNLINEEK 567


>gi|110598676|ref|ZP_01386941.1| threonyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
 gi|110339729|gb|EAT58239.1| threonyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
          Length = 657

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 73/453 (16%), Positives = 151/453 (33%), Gaps = 42/453 (9%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K ++ +L+E  R D      +L L   +  +   G+  WLP G    + + + ++EE
Sbjct: 237 KQLKEYVTLLEEAKRRDHRKLGAELELFM-LSAEVGSGLPIWLPKGAIIRNELESFLKEE 295

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMT 115
           Q + G + +  P + + +L+  SG Y  Y          +D+       +  P +     
Sbjct: 296 QRKRGYLPVYTPHIGNIELYKRSGHYPYYSDSQFPPLTYHDEEGRKEQYLLKPMNCPHHH 355

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSY 174
            I+ S ++SYR+LP    +    +R E      G++R+R F   D++ +    +      
Sbjct: 356 LIYSSKMRSYRDLPIRLTEFGTVYRHEQSGELNGLVRARGFTQDDSHIYCRPDQLVDE-I 414

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIP 233
                    +F  LG   +  R                + D      +  + +       
Sbjct: 415 CSAIELTQFVFGTLGFNDVQTRLS--------------MHDPENQTKYGGTAEVWAQAEK 460

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                 D +     I     + Y    D     + D+L    ++    ++          
Sbjct: 461 DVKEAADRMGIEYFIGIGEASFYGPKIDFI---VRDALGRKWQLGTVQVDYVMP------ 511

Query: 294 YSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
                  T+ G+D + H    +     G+M     V+     G   +W   V    + + 
Sbjct: 512 --ERFDLTYIGSDSQKHRPVVIHRAPFGSMERFIGVLIEHTAGNFPLWLAPVQAVVLPIA 569

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                 +   D  + +   L   G     D   E+IG +   A+L   P  +++G K   
Sbjct: 570 ------EDVHDYAKSVQQALLGAGIRSELDTRNEKIGKKIREAELAKVPCMIVIGQKEKE 623

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +V ++    G     ++  +        +  
Sbjct: 624 SGEVSLRRHRIGDEGCFTVTGLTEKLLKEIAAR 656


>gi|319775327|ref|YP_004137815.1| prolyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|319897767|ref|YP_004135964.1| prolyl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|329122677|ref|ZP_08251255.1| proline--tRNA ligase [Haemophilus aegyptius ATCC 11116]
 gi|317433273|emb|CBY81648.1| prolyl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|317449918|emb|CBY86130.1| prolyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|327472551|gb|EGF17981.1| proline--tRNA ligase [Haemophilus aegyptius ATCC 11116]
          Length = 572

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 146/428 (34%), Positives = 205/428 (47%), Gaps = 39/428 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E     
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAI 239

Query: 236 -------------NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                          D  ++ ++  +VEQ+  P   T      K  D       +  RG 
Sbjct: 240 AIGERQAPTAEMCLVDTPNVKTIAELVEQFNLPIEKTVKTLIVKGADENQPLVALIIRGD 299

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
              +         +     F         +  G   +GA+ +    I          +  
Sbjct: 300 HELNEIKAQKHPLVADPLEFADETEIKAKIGAGVGSLGAVNLNIPAIIDRTVALMSDFSC 359

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYA------------RLS-KVGCDV--FWDDMGEQ 387
                     N+     V       +               L  K G +V   +     Q
Sbjct: 360 GANINGKHYFNVNWERDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIF-----Q 414

Query: 388 IGSQFAVA 395
           +G +++ A
Sbjct: 415 LGKKYSEA 422



 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 4/188 (2%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K      RGIEVGHIF  G KYS  M AT +G DGK   + MG YG
Sbjct: 384 DLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVG 376
           IG  RVVA+ IE  HD +  I   D +APF ++++ +     +  +   E++Y  L   G
Sbjct: 444 IGVTRVVASAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMHKSEAVQKYAEELYRTLQSQG 503

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV +DD  E+ G  FA  +L+G P  V++G K + + ++E K+R TG +E +S +++++
Sbjct: 504 VDVIFDDRKERPGVMFADMELVGVPHMVVIGEKNLDNGEIEYKNRRTGEKEMISKDKLLS 563

Query: 437 YASHRFSN 444
             + +  N
Sbjct: 564 VLNEKLGN 571


>gi|186477394|ref|YP_001858864.1| prolyl-tRNA synthetase [Burkholderia phymatum STM815]
 gi|226699127|sp|B2JHD3|SYP_BURP8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|184193853|gb|ACC71818.1| prolyl-tRNA synthetase [Burkholderia phymatum STM815]
          Length = 578

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 136/288 (47%), Positives = 182/288 (63%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE
Sbjct: 1   MKASRFFIGTLKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPIGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWQESGRWEKYGPELLRFKDRKQSDFVIGPTHEEVVTDIARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQ+Q KFRDE+RPRFGVMR REF+MKDAYSFD   +G + SY KM+ +
Sbjct: 121 QIKSYRQLPVNFYQVQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDMDGLRESYRKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y+RIF RLGL    + A++G IGG  SHEF V+ADTGE  +       DF    E  +  
Sbjct: 181 YVRIFTRLGLDFRAVAADNGSIGGSGSHEFHVIADTGEDDIAYCPT-SDFASNVEAAEAL 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
               +  +    + + + P  A  +   E L   L +  +      E 
Sbjct: 240 PLIAERAAPKEELRKTSTPGKAKCEAVAEHLNIPLEKTIKSIILATEN 287



 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 72/191 (37%), Positives = 105/191 (54%), Gaps = 3/191 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K V    RGIEVGH+F  GTKYS  M+ATF    GK   +
Sbjct: 382 PEPVVADIRNVKKDDPSPDGKGVIDICRGIEVGHVFQLGTKYSEAMNATFLDESGKPQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  R++ A IE + D KGIIWP+S+APF++ L  +        R+  +K++  
Sbjct: 442 QMGCYGIGITRILGAAIEQNFDDKGIIWPESIAPFEVVLCPMGYDRSDAVREQADKLHDE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       + +
Sbjct: 502 LTAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGRRDAEATLLPV 561

Query: 432 EEVINYASHRF 442
           E        + 
Sbjct: 562 EAAAQAVIDKI 572


>gi|167856063|ref|ZP_02478806.1| prolyl-tRNA synthetase [Haemophilus parasuis 29755]
 gi|219871797|ref|YP_002476172.1| prolyl-tRNA synthetase [Haemophilus parasuis SH0165]
 gi|254782903|sp|B8F7C2|SYP_HAEPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167852812|gb|EDS24083.1| prolyl-tRNA synthetase [Haemophilus parasuis 29755]
 gi|219692001|gb|ACL33224.1| prolyl-tRNA synthetase [Haemophilus parasuis SH0165]
          Length = 571

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 146/412 (35%), Positives = 197/412 (47%), Gaps = 36/412 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPLASGMYNWLPTGLRVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++GA+E+ +P +Q ADLWVES R++ YG E+LR  DR D+  + GPTHEEV+TD+ R 
Sbjct: 61  MNKSGALEVEMPVVQPADLWVESERWEDYGPELLRFKDRGDRPFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR REFLMKDAYSF  + E  + +Y+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRGREFLMKDAYSFHTSKESLQETYDVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  IF RLGL   P+ A++G IGG  SHEF VLA +GE  V       D+    E     
Sbjct: 181 YSNIFTRLGLDFRPVAADTGSIGGSASHEFQVLAQSGEDDVVF-STESDYAANIELAEAI 239

Query: 236 -------------NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS--AR 280
                          D  +  ++  +VEQ+  P   T      K   +  E   V+   R
Sbjct: 240 AVGERQAPTAEMTLVDTPNAKTIAELVEQFNLPIEKTVKTLIVK--GASEEQPLVALVIR 297

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           G    +         +     F         +  G   +G + +   VI          +
Sbjct: 298 GDHELNEIKAVKCEEVAEPFEFADEAEIKAKIGAGIGSLGPVNMPIPVIIDRSVALMSDF 357

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYA-------------RLSKVGCDV 379
                       NI     V       +                L K G +V
Sbjct: 358 GAGANIDGKHYFNINWERDVALPKIADLRNVVEGDPSPDGKGTLLIKRGIEV 409



 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     +I  +        +D+ N    D  P+ K   +  RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNINWERDVALPKIADLRNVVEGDPSPDGKGTLLIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
            AT +G DG+   + MG YGIG  RVVAA IE  HD +  I   D++APF ++++ +   
Sbjct: 424 KATVQGEDGRPQTMIMGCYGIGVTRVVAAAIEQHHDERGIIWPTDAIAPFTVAVVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E +Y  L   G DV +DD  E+ G  FA  +L+G P  +++G K + + ++
Sbjct: 484 KSESVQTFAEDLYKTLRSQGVDVIFDDRKERPGVMFADMELIGVPHMLVIGEKNLENGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++++   R +
Sbjct: 544 EYKNRRTGEKQMIAKDQLLDFLKGRIN 570


>gi|325103180|ref|YP_004272834.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Pedobacter
           saltans DSM 12145]
 gi|324972028|gb|ADY51012.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Pedobacter
           saltans DSM 12145]
          Length = 642

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 158/446 (35%), Gaps = 38/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   I +   RD      +L L T    +   G+  WLP G    + + + +++ Q 
Sbjct: 228 LTEYIQRIEEAKKRDHRKLGKELELFT-FSEKVGLGLPLWLPKGTALRERLVSFLQKAQQ 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G  ++  P +   +L++ SG YD YG +  +     +  +     P +     +I++S
Sbjct: 287 KAGYDQVITPHIGHKNLYITSGHYDKYGADSFQPIKTPQEGEEFFLKPMNCPHHCEIYKS 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP    +    +R E      G+ R R F   DA+ F   P+  K  + K+  
Sbjct: 347 KPRSYKDLPVRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFCR-PDQVKEEFKKVID 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG      +                  D      +   D       +   + 
Sbjct: 406 LVLYVFKALGFDEYIAQVSLR--------------DPENKSKYIGSDENWILAENAIIEA 451

Query: 240 DDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                L ++VE    A Y    D     + D+L    ++    ++               
Sbjct: 452 AAEKGLPTVVETGEAAFYGPKLDFM---VKDALGRKWQLGTIQVDYNLP--------ERF 500

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + G+D + H    +     G++    AV+     G   +W        + +      
Sbjct: 501 ELEYTGSDNQKHRPVMIHRAPFGSLERFVAVLIEHCAGNFPLWLTPEQFIVLPI------ 554

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +  +K+   L+        D   E+IG +   A++   P  +I+G K + D  V 
Sbjct: 555 SEKFEEYGKKVLDSLNNSDIRGLIDLRDEKIGRKIRDAEVKKLPYMLIIGEKEMQDGMVS 614

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++    G +  M++EE  +       
Sbjct: 615 VRKHGEGDKGSMTIEEFKSLLLDEIK 640


>gi|296282100|ref|ZP_06860098.1| threonyl-tRNA synthetase [Citromicrobium bathyomarinum JL354]
          Length = 669

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 147/453 (32%), Gaps = 48/453 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++   + +   RD      ++ L    + + + G   W P G K    + + +R + +
Sbjct: 237 LNEHLHRLEEAAKRDHRKLGREMDLF--HLQEEAHGSVFWHPQGYKIWRQLESYMRRKMD 294

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-------------RNDKAMIYGPT 109
             G  E+  P +  A  W +SG +  Y + M  + D             ++   M   P 
Sbjct: 295 GAGYREIKTPQVMDARQWEQSGHWGKYRENMFVIPDEVPNTEDEGELVSKDADWMALKPM 354

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPE 168
           +      +F+  I SYR LP    ++    R+E      G+MR R+F   DA+ F  T +
Sbjct: 355 NCPAHVLVFKQGITSYRELPIRLGEMGCCHRNEPHGALHGLMRVRQFTQDDAHIFC-TEK 413

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                          ++   G K    +    P     S      A+            M
Sbjct: 414 QVVEEVRAFIELADAVYRDFGFKYAI-KLALRPEQRFGSDADWDKAEQELRDAVAEAGMM 472

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +     E             +    A YA   + H   L D++    +V     +     
Sbjct: 473 NDEYGWEE------------LPGEGAFYAPKLEWH---LTDAIGRTWQVGTIQGDRVLP- 516

Query: 289 YFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                    + A++ G DG+ H    +     G+      ++     GK  +W       
Sbjct: 517 -------ERLDASYIGEDGEKHRPVMLHRAIFGSYERFIGILIEHFAGKLPVWLAPTQAV 569

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
             +++          D   +  A+L   G     D   E+I  +     L   P  ++VG
Sbjct: 570 VATIV------SDADDYASEALAKLRAAGIRAESDLRNEKINYKVREHSLAKVPHLLVVG 623

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +   +  V ++      +  MSL+E I     
Sbjct: 624 KREAEEGTVAVRTLGEREQRVMSLDEAIAMLRD 656


>gi|262276749|ref|ZP_06054542.1| threonyl-tRNA synthetase [alpha proteobacterium HIMB114]
 gi|262223852|gb|EEY74311.1| threonyl-tRNA synthetase [alpha proteobacterium HIMB114]
          Length = 637

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 147/448 (32%), Gaps = 44/448 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD       L L      + S G   W   G     ++   +R++Q   
Sbjct: 231 EYLHRIEEAEKRDHRKLGKALDLF--HFQEESPGAVFWHQKGWSLFQSLVKFMRDKQTDA 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E++ P +    LW +SG ++ + + M    D ++K     P +      +F   +KS
Sbjct: 289 GYLEVNTPEMLDKTLWEKSGHWEKFQEHMYT-TDADEKTFAIKPMNCPGHIQVFNQGLKS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y++LP    +     R E      G+MR R F   DA+ F    + ++ S        L 
Sbjct: 348 YKDLPLKISEFGKVHRYEPSGALHGLMRVRAFTQDDAHIFCTEEQITEESLKVT-NLILD 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I+   G K++ ++    P                           +    +         
Sbjct: 407 IYKSFGFKNVKLKFSDRPEKR-----------------VGDDKIWNKSEKALLDAIKTSG 449

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I +   A Y    +     L D++  + +     ++       G        A++ 
Sbjct: 450 LKYEINKGEGAFYGPKIEF---VLIDAIGRDWQCGTLQVDFNLPGRLG--------ASYV 498

Query: 304 GADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             DG      M    +     R +  +IE                               
Sbjct: 499 ANDGSKKIPVMLHRAMFGSLERFIGILIEHHTGKFPFWLSPEQVAVLPI-------SNKQ 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   K+   L K G     DD  E+I  +     +   P+ +I G+K V ++ + I+  
Sbjct: 552 NDYASKVKLLLEKKGLRSIIDDRNEKINYKIREHSVSKIPVLMICGAKEVQNNTITIRRL 611

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
               ++ +SLEE +   S    +N P +
Sbjct: 612 GQTNQQTVSLEEAVTNLS--LESNTPSI 637


>gi|148698861|gb|EDL30808.1| prolyl-tRNA synthetase (mitochondrial)(putative), isoform CRA_a
           [Mus musculus]
 gi|148698862|gb|EDL30809.1| prolyl-tRNA synthetase (mitochondrial)(putative), isoform CRA_a
           [Mus musculus]
          Length = 475

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 147/456 (32%), Positives = 226/456 (49%), Gaps = 46/456 (10%)

Query: 3   RSKYFLPI-LQENP--------RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P  L+E+          D    S +LML+ G+I   S G Y  +P   +A++ +
Sbjct: 42  LSRMFQPQNLREDQVLSLEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKL 101

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++P+L  A+LW  + R+D  G+E+LRL DR+ K    GPTHEE 
Sbjct: 102 VRVIDQEMQAIGGQKINMPSLSPAELWRATSRWDLMGRELLRLRDRHGKEYCLGPTHEEA 161

Query: 114 MT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T  +      SY+ LP   YQ+  KFRDE RPRFG++R REF MKD Y+FD + E ++ 
Sbjct: 162 VTALVASQKKLSYKQLPLLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQE 221

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y R+F RLGL+ +  RA+ G IGG +SHEF +  D GE ++           
Sbjct: 222 TYGLVCDAYCRLFDRLGLQWMKARADVGSIGGTMSHEFQLPVDIGEDRLVVCPSC----- 276

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                   A T  +   +      +      +GIEVGH FY GT
Sbjct: 277 ---------------------HFSANTEILDLSQKICPDCQGPLTETKGIEVGHTFYLGT 315

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F  A G+    +MG YG+G  R++AA IE       I WP  +AP+++ +I
Sbjct: 316 KYSSIFNALFTNAHGESLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPRLLAPYQVCVI 375

Query: 353 NIKA--HDQVCRDACEKIYARLSKV-----GCDVFWDDMGE-QIGSQFAVADLLGFPLQV 404
             K    +    +  EK+Y  + +      G +V  DD     IG++   A+ LG+P  +
Sbjct: 376 PPKKGSKETAATEIVEKLYDDVMEAVPQLRG-EVLLDDRTHLTIGNRLKDANKLGYPFVI 434

Query: 405 IVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYAS 439
           I G + + D    E+  + TG    ++ E V+   +
Sbjct: 435 IAGKRALEDPAHFEVWSQNTGEVVFLTKEGVMELLT 470


>gi|94676542|ref|YP_588910.1| threonyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|123081480|sp|Q1LT04|SYT_BAUCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94219692|gb|ABF13851.1| threonyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 642

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 139/447 (31%), Gaps = 40/447 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+   Y   + +   RD      +L L    I + + G+  W   G      +   IR +
Sbjct: 227 MQLKCYLQSLQEVKKRDHRKIGQQLDLY--HIQEEAPGMVFWHVDGWIIFRELETFIRSK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW ++G + +Y  E +      ++     P +      IF  
Sbjct: 285 LQTYKYQEVKSPVMIDRTLWEQTGHWSNY-AEHIFTTSSENREYCIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            I SYR+LP    +    +R+E      G+MR R F   DA+ F    +      N    
Sbjct: 344 QINSYRDLPLRMAEFGSCYRNEPSGSLHGLMRVRNFTQDDAHIFCTEEQVCDE-INNNIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++H  G K I +   + P                      +    D       T  
Sbjct: 403 MLYEVYHTFGFKKILVNLSTRPAHR-----------------IGNDKIWDKAEQDLATTL 445

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +   L        A Y    +     L DS     +     ++    F   ++    + 
Sbjct: 446 TNNGILFKYNVGAGAFYGPKIEF---TLLDSFDRAWQCGTIQLD----FSLPSR----LK 494

Query: 300 ATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   + +    V +    +G++     ++   + G    W        +++       
Sbjct: 495 AFYINKNNQRLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPTQVVLMNI------S 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +   ++  +LS        D   E+IG +     L   P  +I G + +   KV I
Sbjct: 549 DNQSNYVIQLMQKLSTANIRAKIDLRNEKIGFKIREHTLRRVPYMLICGDQEIKMGKVTI 608

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R         +   I    H  ++ 
Sbjct: 609 RTRYGKNLGMFEMNNFIEKLQHEINHR 635


>gi|164685792|ref|ZP_01945930.2| prolyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|165918393|ref|ZP_02218479.1| prolyl-tRNA synthetase [Coxiella burnetii RSA 334]
 gi|164601306|gb|EAX33436.2| prolyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|165917899|gb|EDR36503.1| prolyl-tRNA synthetase [Coxiella burnetii RSA 334]
          Length = 564

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 130/237 (54%), Positives = 168/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM  + + G+Y+WLPLG + L  V  ++REE
Sbjct: 1   MKVSQFFLATVKETPADAVLASHQLMIRAGMFRKLASGLYTWLPLGLRVLQKVADVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 61  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 121 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S    D+    E  
Sbjct: 181 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSD-ESDYAANIEKA 236



 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 82/203 (40%), Positives = 112/203 (55%), Gaps = 4/203 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
           DD   +N   E+   P  + +D+      D  P+ K     ARGIEVG +F  G KYS  
Sbjct: 363 DDFHWINVNWER-DVPLGSVADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRK 421

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+AT     GK  Y+QMG YGIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H
Sbjct: 422 MNATVVDELGKSRYLQMGCYGIGVSRTVAAAIEQNHDERGIIWPTPMAPFFIALVPVNMH 481

Query: 358 DQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                R+ACEK+Y  L   G +V WDD  E+ G  FA  DL+G P ++++    +    V
Sbjct: 482 KSYRVREACEKLYNELIDAGYEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIV 541

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
           E K R +   E++SLE V++   
Sbjct: 542 EYKARKSKEAENVSLENVLSVFR 564


>gi|282850156|ref|ZP_06259535.1| proline--tRNA ligase [Veillonella parvula ATCC 17745]
 gi|282579649|gb|EFB85053.1| proline--tRNA ligase [Veillonella parvula ATCC 17745]
          Length = 572

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 112/235 (47%), Positives = 158/235 (67%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  +K + P L+E P DA++ S +LMLR G + + + G+YS+LPLG +++  + AI+REE
Sbjct: 1   MLATKLYAPTLREVPSDADVVSQQLMLRAGFMRKTANGLYSFLPLGWRSIKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRASAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDNEFCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKDAYSFD+   G   SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDAYSFDVDEAGLDESYKSMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL   P+ A+SG IGG  +HEF+ +A+ GE  +       D+    E
Sbjct: 181 YTRIFTRCGLTFRPVEADSGAIGGSGTHEFMAIAEAGEADIVYCTKC-DYAANIE 234



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/178 (37%), Positives = 100/178 (56%), Gaps = 2/178 (1%)

Query: 269 DSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+       A+GIEVG +F  GTKYS  + ATF   +G+ + + MG YGIG  R +A
Sbjct: 394 DVCPKCGGALEHAKGIEVGQVFKLGTKYSEALQATFLDQNGRPNPMIMGCYGIGVSRTLA 453

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A IE  HD  GIIWP S+APF+  ++ I A D+      + IY  L   G DV  DD  +
Sbjct: 454 AAIEQYHDENGIIWPRSIAPFEAVIVPINAKDEALMSTSQTIYTALQNAGVDVLLDDRKD 513

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + G +F  ADL+G+PL++ V    + +++VEI+ R +G     +++ V +  +    N
Sbjct: 514 RAGVKFKDADLIGYPLRITVSKNTLENNEVEIQIRKSGEALPCAIDSVADKVTELLQN 571


>gi|160946146|ref|ZP_02093357.1| hypothetical protein PEPMIC_00108 [Parvimonas micra ATCC 33270]
 gi|158447669|gb|EDP24664.1| hypothetical protein PEPMIC_00108 [Parvimonas micra ATCC 33270]
          Length = 648

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 168/444 (37%), Gaps = 37/444 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L  L++   RD      +L +   MI Q    G+  WLP G      V   I +++   
Sbjct: 234 YLEFLEDAKQRDHRKIGKELGIF--MISQNVGAGLPFWLPKGATIRRVVERYIVDKEIEC 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIK 123
           G   +  P L + DL+  SG +D Y   M    D  +   ++  P +     +I+ + + 
Sbjct: 292 GYEHVYTPILANVDLYKTSGHWDHYQDSMFPPMDLGNGELLVLRPMNCPHHMEIYNNDVH 351

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY+  P    ++ +  R E+     G+ R RE  + DA+ F   P+  K  + ++     
Sbjct: 352 SYKEFPIRIAELGMMHRYEMSGTLSGLQRVREMTLNDAHIFVR-PDQIKEEFTRVVNLMK 410

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDD 241
            ++    +K+   R                  D    + +   D M     +   +  DD
Sbjct: 411 SVYEDFDIKNFRFRLS--------------YRDPENKEKYFDDDEMWNNAEAMLKSAMDD 456

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       +   A Y    DV   ++  ++   + +S   ++    F    ++      T
Sbjct: 457 LGYEYFEAKGEAAFYGPKLDV---QVKTAIGLEETLSTIQLD----FLLPERFD----LT 505

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G DGK+ +  +  +  G +  +   +    +     +P  +AP ++ ++ I       
Sbjct: 506 YVGEDGKNTHRPVVIHR-GIVSTMERFVAYLIEEYKGAFPTWLAPEQVKILPISDK---F 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++    +K    V  DD  E+IG +   A L   P  +IVG   V++  V ++ R
Sbjct: 562 NDYAYELQKEFAKKDIRVAVDDRTEKIGLKIREAQLAKIPYSLIVGENEVNERTVSVRKR 621

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G +  M  E  ++      ++ 
Sbjct: 622 GEGDKGSMKFEAFLDKILEEVNSK 645


>gi|73919762|sp|Q8CFI5|SYPM_MOUSE RecName: Full=Probable prolyl-tRNA synthetase, mitochondrial;
           AltName: Full=Proline--tRNA ligase; Short=ProRS; Flags:
           Precursor
 gi|24416455|gb|AAH38817.1| Prolyl-tRNA synthetase (mitochondrial)(putative) [Mus musculus]
          Length = 475

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 147/456 (32%), Positives = 226/456 (49%), Gaps = 46/456 (10%)

Query: 3   RSKYFLPI-LQENP--------RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P  L+E+          D    S +LML+ G+I   S G Y  +P   +A++ +
Sbjct: 42  LSRMFQPQNLREDQVLSLEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKL 101

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++P+L  A+LW  + R+D  G+E+LRL DR+ K    GPTHEE 
Sbjct: 102 VRVIDQEMQAIGGQKINMPSLSPAELWRATSRWDLMGRELLRLRDRHGKEYCLGPTHEEA 161

Query: 114 MT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T  +      SY+ LP   YQ+  KFRDE RPRFG++R REF MKD Y+FD + E ++ 
Sbjct: 162 VTALVASQKKLSYKQLPLLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQE 221

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y R+F RLGL+ +  RA+ G IGG +SHEF +  D GE ++           
Sbjct: 222 TYGLVCDAYCRLFDRLGLRWMKARADVGSIGGTMSHEFQLPVDIGEDRLVVCPSC----- 276

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                   A T  +   +      +      +GIEVGH FY GT
Sbjct: 277 ---------------------HFSANTEILDLSQKICPDCQGPLTETKGIEVGHTFYLGT 315

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F  A G+    +MG YG+G  R++AA IE       I WP  +AP+++ +I
Sbjct: 316 KYSSIFNALFTNAHGESLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPRLLAPYQVCVI 375

Query: 353 NIKA--HDQVCRDACEKIYARLSKV-----GCDVFWDDMGE-QIGSQFAVADLLGFPLQV 404
             K    +    +  EK+Y  + +      G +V  DD     IG++   A+ LG+P  +
Sbjct: 376 PPKKGSKETAATEIVEKLYDDVMEAVPQLRG-EVLLDDRTHLTIGNRLKDANKLGYPFVI 434

Query: 405 IVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYAS 439
           I G + + D    E+  + TG    ++ E V+   +
Sbjct: 435 IAGKRALEDPAHFEVWSQNTGEVVFLTKEGVMELLT 470


>gi|319788986|ref|YP_004150619.1| prolyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
 gi|317113488|gb|ADU95978.1| prolyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
          Length = 568

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 115/254 (45%), Positives = 163/254 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P  +E+P DAEI SHKL++R G I + + G+Y  LPLG + +  +  +IR+E
Sbjct: 1   MRFSRAFIPTKKESPADAEIPSHKLLVRAGFIRKVASGLYDILPLGARVIRKIEQVIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA E+ +P +  A+LW ESGR+D YGKEM++  DR+++    GPT EE++TD+ R 
Sbjct: 61  MERAGAQEVILPIMHPAELWQESGRWDVYGKEMIKFKDRHERDYALGPTAEEMITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQI  KFRDE+RPRFG+MRSREF+MKDAYSF  + E ++  Y  MF +
Sbjct: 121 EVKSYKELPLNLYQIGRKFRDEIRPRFGLMRSREFIMKDAYSFHASDEDAEREYWNMFET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+   + A++G IGG  SHEF+V+ADTGE+++    +        +     
Sbjct: 181 YSRIFKRLGLEFKAVEADTGEIGGSFSHEFMVIADTGESKLVYCPECGYAASTEKAQQVR 240

Query: 241 DIISLNSIVEQWTA 254
             +  N   E    
Sbjct: 241 PEVPPNREGEFEAV 254



 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/189 (40%), Positives = 105/189 (55%), Gaps = 3/189 (1%)

Query: 256 YAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            A   DV   +  +  P+     V  RGIEVGHIF  GTKYS  M ATF    G +  + 
Sbjct: 378 VAEFVDVTEVRGGEPCPKCGAPLVEKRGIEVGHIFKLGTKYSEAMGATFVDEQGNEKPMV 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  RV+AA +E  HD  GIIWP  +APF++ +I +    +   +A E++Y+ L 
Sbjct: 438 MGCYGIGVTRVMAAAVEQGHDENGIIWPVEIAPFEVIVIPVNVKKEEIVEAAERVYSELM 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G DV  DD   + G +F  ADL+G P QVIVG K  S+  VE+K R +G R ++ ++ 
Sbjct: 498 EAGFDVLLDDRNARPGFKFKDADLIGIPYQVIVGKK-ASEGVVELKIRRSGERLELPVDG 556

Query: 434 VINYASHRF 442
           V+       
Sbjct: 557 VVGKLRELI 565


>gi|238019359|ref|ZP_04599785.1| hypothetical protein VEIDISOL_01223 [Veillonella dispar ATCC 17748]
 gi|237864058|gb|EEP65348.1| hypothetical protein VEIDISOL_01223 [Veillonella dispar ATCC 17748]
          Length = 572

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 112/235 (47%), Positives = 158/235 (67%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  +K + P L+E P DA++ S +LMLR G + + + G+YS+LPLG +++  + AI+REE
Sbjct: 1   MLATKLYAPTLREVPSDADVVSQQLMLRAGFMRKTANGLYSFLPLGWRSIKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRASAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDNEFCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKDAYSFD+   G   SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDAYSFDVDEAGLDESYKSMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL   P+ A+SG IGG  +HEF+ +A+ GE  +       D+    E
Sbjct: 181 YTRIFTRCGLTFRPVEADSGAIGGSGTHEFMAIAEAGEADIVYCTKC-DYAANIE 234



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 64/189 (33%), Positives = 102/189 (53%), Gaps = 1/189 (0%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            A    + ++ +  +        A+GIEVG +F  GTKYS  + ATF   +G+ + + MG
Sbjct: 384 VAPIRLITDDDVCPTCG-GTLEHAKGIEVGQVFKLGTKYSEALQATFLDQNGRPNPMIMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R +AA IE  HD  GIIWP ++APF+  ++ I A D+      + IY  L   
Sbjct: 443 CYGIGVSRTLAAAIEQYHDENGIIWPRAIAPFEAVIVPINAKDEALMSTSQTIYTALQDA 502

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  ++ G +F  ADL+G+PL++ V    + +++VEI+ R +G     +++ V 
Sbjct: 503 GVDVLLDDRKDRAGVKFKDADLIGYPLRITVSKNTLENNEVEIQIRKSGEAITCAIDSVA 562

Query: 436 NYASHRFSN 444
              +    +
Sbjct: 563 TKVTELLQD 571


>gi|294791808|ref|ZP_06756956.1| proline--tRNA ligase [Veillonella sp. 6_1_27]
 gi|294793669|ref|ZP_06758806.1| proline--tRNA ligase [Veillonella sp. 3_1_44]
 gi|294455239|gb|EFG23611.1| proline--tRNA ligase [Veillonella sp. 3_1_44]
 gi|294457038|gb|EFG25400.1| proline--tRNA ligase [Veillonella sp. 6_1_27]
          Length = 572

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 112/235 (47%), Positives = 158/235 (67%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  +K + P L+E P DA++ S +LMLR G + + + G+YS+LPLG +++  + AI+REE
Sbjct: 1   MLATKLYAPTLREVPSDADVVSQQLMLRAGFMRKTANGLYSFLPLGWRSIKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRASAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDNEFCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKDAYSFD+   G   SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDAYSFDVDEAGLDESYKSMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL   P+ A+SG IGG  +HEF+ +A+ GE  +       D+    E
Sbjct: 181 YTRIFTRCGLTFRPVEADSGAIGGSGTHEFMAIAEAGEADIVYCTKC-DYAANIE 234



 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 113/232 (48%), Gaps = 3/232 (1%)

Query: 216 TGETQVFCSKDFMD-FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           T E  +   +  M+ + +       D      +    +       + +      D  P+ 
Sbjct: 340 TEEFAIVVDESVMETYNVCGGANKKDAHYVNINPKRDFNVEDIIVAPIRLITKDDVCPKC 399

Query: 275 K--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                 A+GIEVG +F  GTKYS  + ATF   +G+ + + MG YGIG  R +AA IE  
Sbjct: 400 GGALEHAKGIEVGQVFKLGTKYSEALQATFLDQNGRPNPMIMGCYGIGVSRTLAAAIEQY 459

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           HD  GIIWP S+APF+  ++ I A D+      + IY  L   G DV  DD  ++ G +F
Sbjct: 460 HDENGIIWPRSIAPFEAVIVPINAKDEALMSTSQTIYTALQNAGVDVLLDDRKDRAGVKF 519

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             ADL+G+PL++ V    + +++VEI+ R +G     +++ V +  +    N
Sbjct: 520 KDADLIGYPLRITVSKNTLENNEVEIQIRKSGEALPCAIDSVSDKVTELLQN 571


>gi|148826625|ref|YP_001291378.1| prolyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|166980127|sp|A5UDZ4|SYP_HAEIE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148716785|gb|ABQ98995.1| prolyl-tRNA synthetase [Haemophilus influenzae PittEE]
          Length = 572

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 127/265 (47%), Positives = 167/265 (63%), Gaps = 1/265 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E  +  
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
            I    +   + T      +   NE
Sbjct: 240 AIGERQAPTAEMTLVDTPNAKTINE 264



 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/208 (33%), Positives = 110/208 (52%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVAMPEVFDLRNVVEGDRSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +  I   D +APF ++++ +   
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSESVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R +G +E +S +++++  + +  N
Sbjct: 544 EYKNRRSGEKEMISKDKLLSVLNEKLGN 571


>gi|332247927|ref|XP_003273115.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial [Nomascus
           leucogenys]
          Length = 475

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 139/433 (32%), Positives = 221/433 (51%), Gaps = 35/433 (8%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D    S +LML+ G+I+  S G Y  LP   +A++ +  +I +E    G  ++++P+L  
Sbjct: 65  DLTCKSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVNMPSLSP 124

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQI 135
           A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T  I      SY+ LPF  YQ+
Sbjct: 125 AELWQATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLPFLLYQV 184

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F+RLGL  + +
Sbjct: 185 TRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNRLGLPFVKV 244

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           +A+ G IGG +SHEF +  D GE ++                                + 
Sbjct: 245 QADVGTIGGTVSHEFQLPVDIGEDRLAICPRC--------------------------SF 278

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            A    +   ++     +      +GIEVGH FY GTKYS   +A F    GK    +MG
Sbjct: 279 SANMETLDFSQMNCPACQGPLTKTKGIEVGHTFYLGTKYSSIFNAQFTNVYGKPTLAEMG 338

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLS 373
            YG+G  R++AA IE       + WP  +AP++  LI  K    ++   +   ++Y  ++
Sbjct: 339 CYGLGVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEEAASELIGQLYDHIT 398

Query: 374 KV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIRE 427
           +       +V  DD     IG++   A+  G+P  +I G + + D    E+  + TG   
Sbjct: 399 EAVPQLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALEDPAYFEVWCQNTGEVV 458

Query: 428 DMSLEEVINYASH 440
            ++ + V++  + 
Sbjct: 459 FLTKDGVMDLLTQ 471


>gi|300690369|ref|YP_003751364.1| proline--tRNA ligase [Ralstonia solanacearum PSI07]
 gi|299077429|emb|CBJ50055.1| Proline--tRNA ligase [Ralstonia solanacearum PSI07]
          Length = 574

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 118/233 (50%), Positives = 163/233 (69%), Gaps = 1/233 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SHKLM+R GMI +   GIY+++P+G +A+  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEIVSHKLMMRAGMIKKLGAGIYTYMPVGLRAIRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+EM +P +Q  +LW E+GR+D  G+E++R+ DR+++ ++  PT EEV+TDI R+
Sbjct: 61  MNAAGAVEMLMPVVQPGELWQETGRWDKMGEELMRVKDRHERDLVIQPTSEEVVTDIART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ +P  FYQIQ KFRDE RPRFG+MR REF MKDAYSFD   EG K SY KM+ +
Sbjct: 121 EIRSYKQMPVNFYQIQTKFRDERRPRFGIMRGREFTMKDAYSFDRDVEGMKVSYGKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y RIF R GL+   + A++G IGG  SHEF V+A+TGE  +       D+   
Sbjct: 181 YTRIFQRFGLEFRAVAADNGAIGGSGSHEFHVIAETGEDAIVY-SPESDYAAN 232



 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 3/172 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    D  P+ K      RGIEVGH+F  GT+YS  M+ATF   +GK   +
Sbjct: 382 PEAEVADLRNVVEGDPSPDGKGALALCRGIEVGHVFMLGTRYSESMNATFLDENGKTQPM 441

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE ++D +GIIWP S+APF++ +  +     +  R   ++++A 
Sbjct: 442 VMGCYGIGITRILGAAIEQNYDARGIIWPVSIAPFEVVICPVGYDRSEAVRAEADRLHAE 501

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           L+  G DV  DD GE+ G  FA  +L+G P +V+VG + + + K+E++ R  
Sbjct: 502 LAAAGIDVILDDRGERPGVMFADWELIGVPFRVVVGERGLKEGKLELQGRRD 553


>gi|262197045|ref|YP_003268254.1| prolyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
 gi|262080392|gb|ACY16361.1| prolyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
          Length = 584

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 114/254 (44%), Positives = 154/254 (60%), Gaps = 1/254 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F+P L+E+P DA++ SH  M+R G + + + G+Y++LPLG + +  +  I+REE
Sbjct: 1   MRLSWAFIPTLKESPADAQVVSHVYMVRGGYMRRLAAGVYTFLPLGWRVIRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P     +LW ESGR+  YG E+LR  DR      +GPTHEEV+ D+ R 
Sbjct: 61  MDAAGAQEVLMPAAIPGELWQESGRWSKYGPELLRFQDRKGADFCFGPTHEEVVVDMVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSYR LP T YQIQ KFRDELRPR G+MR REF+MKDAYSFD++ E + HSY  M+ +
Sbjct: 121 DTKSYRELPLTLYQIQSKFRDELRPRAGLMRGREFIMKDAYSFDVSEEAAMHSYTGMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDF 239
           Y RIF R GL   P+ A++G IGG  SHEF VLA++GE  +  C        +       
Sbjct: 181 YERIFRRCGLDFRPVEADTGAIGGSRSHEFQVLAESGEDAIVSCDACEYAANVEEAKVPA 240

Query: 240 DDIISLNSIVEQWT 253
                +    E   
Sbjct: 241 PSEPGIVHQGEGEA 254



 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 71/184 (38%), Positives = 110/184 (59%), Gaps = 3/184 (1%)

Query: 269 DSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           D  P     +  + RGIEVGH+FY GT YS PM  TF    G++  ++MG YGIG  R+ 
Sbjct: 396 DRCPRCDSGRLRAHRGIEVGHVFYLGTTYSAPMGCTFLDEAGQETAMEMGCYGIGITRIA 455

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           AA IE +HD  GI+WP S+AP++++++ ++  D+    A E +YA+L + G +V  DD  
Sbjct: 456 AAAIEQNHDEGGIVWPLSIAPYEVAILPLQMKDEDVAAAGETLYAKLKECGIEVLLDDRA 515

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E+ G++F  ADL+G PL+V +G + + D KVE+K R  G  E + + + + + +      
Sbjct: 516 ERPGAKFKDADLIGIPLRVAIGKRSLDDGKVEVKWRKGGDAELVPVADAVEHVAGLIRAE 575

Query: 446 RPVL 449
           R  L
Sbjct: 576 RERL 579


>gi|94986656|ref|YP_594589.1| threonyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
 gi|122988800|sp|Q1MRV8|SYT_LAWIP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94730905|emb|CAJ54268.1| Threonyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
          Length = 642

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 156/442 (35%), Gaps = 41/442 (9%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E  R D      +L L        + G+  W P G      +   +R+E
Sbjct: 223 KLLKTYLTQLEEAKRRDHRKLGKELNLFEFH-EDIAPGMVFWQPNGMLLRTILEDFLRKE 281

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G   +  P L   +LW +SG Y +Y + M    +  +      P +      ++++
Sbjct: 282 HLKRGYQLVQGPQLLRRELWEKSGHYTNYKENM-YFTEIEEDVYGIKPMNCVSHMLLYKT 340

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           H+ SYR LP  ++++ +  R E      G++R R+F   DA+   +  +  +        
Sbjct: 341 HLHSYRELPQRYFELGVVHRHEKSGVLHGLLRVRQFTQDDAHIICMPEQLEEEIIQ---- 396

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             +     L                     + ++  T   +   S    +    +     
Sbjct: 397 -VITFVRDLMSLFDFN--------------YHIVISTRPEKSIGSDYAWELATSALIQAV 441

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           + I    SI     A Y    D+   K+ D++    ++S    +    F    ++     
Sbjct: 442 EKINLPYSINHGDGAFYGPKIDI---KVTDAIGREWQLSTIQCD----FTLPERF----E 490

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + G DGK H    +     G++     ++   + G    W   +    +++       
Sbjct: 491 LEYVGQDGKRHQPVMIHRAIFGSIERFIGILTEHYAGAFPTWLTPIQVKILTVT------ 544

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  + +Y++L  VG  V  D   E++G +   A L   P  +++G K +    V +
Sbjct: 545 DAQTPFAKHVYSQLQDVGIRVGLDIRNEKLGFKIREAQLAKIPYILVIGQKELELESVNV 604

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R        S+ E I    +
Sbjct: 605 RLRTGENIGMQSVTEFIKLVEN 626


>gi|189461814|ref|ZP_03010599.1| hypothetical protein BACCOP_02480 [Bacteroides coprocola DSM 17136]
 gi|189431408|gb|EDV00393.1| hypothetical protein BACCOP_02480 [Bacteroides coprocola DSM 17136]
          Length = 646

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 152/444 (34%), Gaps = 39/444 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      ++ L         KG+  WLP G      +   +R  Q R  
Sbjct: 231 YLALLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRIRLQDFLRRIQARYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             E+  P + +  L+V SG Y  YGK+  +        +     P +      I+++  +
Sbjct: 290 YQEVMCPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCMIYKNTPR 349

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R E      G+ R R F   DA+ F    +     + ++     
Sbjct: 350 SYRDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDIIS 408

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  +GL++   +                  D    + +   D           +  + 
Sbjct: 409 IVFKSMGLENFEAQISLR--------------DKVNREKYIGSDENWEKAEQAIVEACEE 454

Query: 243 ISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             L + VE    A Y    D     + D++    ++    ++                  
Sbjct: 455 KGLKAKVEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQLE 503

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G+D + H    +     G+M    AV+     GK  +W           + I    + 
Sbjct: 504 YMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPISEK 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   L K       DD  E+IG +    ++   P  +IVG K   + +V ++ 
Sbjct: 558 FNDYANQVRLELKKSDIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVAVRK 617

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           +  G +  M +E+     +    N
Sbjct: 618 QGEGDKGTMKIEDFAKNVAEEVHN 641


>gi|260914628|ref|ZP_05921094.1| proline-tRNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260631227|gb|EEX49412.1| proline-tRNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 571

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 120/250 (48%), Positives = 161/250 (64%), Gaps = 1/250 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P +A I SH+LMLR GMI   + G+Y+WLP G + L+ V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPAEASIVSHQLMLRAGMIRPLASGLYTWLPTGLRVLNKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA+E+ +   Q A+LW ESGR++ YG E+LR  DR D+  + GPT+EEV+TD+ R 
Sbjct: 61  MDKSGALEVKMAVTQPAELWQESGRWEEYGPELLRFKDRGDRDFVIGPTNEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY+ LP   Y IQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ECASYKQLPLNLYHIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTTHECLQKTYDVMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E  +  
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVF-STESDFAANIELAEAV 239

Query: 241 DIISLNSIVE 250
            +    +  E
Sbjct: 240 ALGERGAPTE 249



 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 73/192 (38%), Positives = 116/192 (60%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M+AT +G DG+   +
Sbjct: 379 PLPQIADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSAAMNATVQGEDGRPQTM 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YGIG  RV+AA IE  HD +GIIWP+++APFK++++ +     +  +   E++Y  
Sbjct: 439 IMGCYGIGVTRVIAAAIEQHHDERGIIWPENIAPFKVAIVPMNMHKSESVQQFAEELYRT 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G +V +DD  E+ G  FA  +L+G P  +++G K +   ++E K+R +G +E ++ 
Sbjct: 499 LMAQGVEVIFDDRKERPGVMFADMELIGVPHMIVIGEKNLEKGEIEYKNRRSGEKEMIAK 558

Query: 432 EEVINYASHRFS 443
           E++++    +F+
Sbjct: 559 EQLLDVLKAKFN 570


>gi|240947869|ref|ZP_04752309.1| prolyl-tRNA synthetase [Actinobacillus minor NM305]
 gi|240297831|gb|EER48267.1| prolyl-tRNA synthetase [Actinobacillus minor NM305]
          Length = 571

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 123/243 (50%), Positives = 160/243 (65%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  I+REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFNDRGNRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E  +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVIF-STESDFAANIELAEAV 239

Query: 241 DII 243
            + 
Sbjct: 240 AVG 242



 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 111/207 (53%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     ++  +       T D+ N    D  P+ K V    RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVALPETFDLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
           +AT +G DGK   + MG YGIG  RVVAA IE  HD +  I   D +APF ++++ +   
Sbjct: 424 NATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEKVQAFAEELYKTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLENGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ E+++ + +    
Sbjct: 544 EYKNRRTGEKQMIAKEQLLAFLAENVK 570


>gi|74152256|dbj|BAE32409.1| unnamed protein product [Mus musculus]
          Length = 511

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 147/456 (32%), Positives = 226/456 (49%), Gaps = 46/456 (10%)

Query: 3   RSKYFLPI-LQENP--------RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P  L+E+          D    S +LML+ G+I   S G Y  +P   +A++ +
Sbjct: 78  LSRMFQPQNLREDQVLSLEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKL 137

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++P+L  A+LW  + R+D  G+E+LRL DR+ K    GPTHEE 
Sbjct: 138 VRVIDQEMQAIGGQKINMPSLSPAELWRATSRWDLMGRELLRLRDRHGKEYCLGPTHEEA 197

Query: 114 MT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T  +      SY+ LP   YQ+  KFRDE RPRFG++R REF MKD Y+FD + E ++ 
Sbjct: 198 VTALVASQKKLSYKQLPLLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQE 257

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y R+F RLGL+ +  RA+ G IGG +SHEF +  D GE ++           
Sbjct: 258 TYGLVCDAYCRLFDRLGLRWMKARADVGSIGGTMSHEFQLPVDIGEDRLVVCPSC----- 312

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                   A T  +   +      +      +GIEVGH FY GT
Sbjct: 313 ---------------------HFSANTEILDLSQKICPDCQGPLTETKGIEVGHTFYLGT 351

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F  A G+    +MG YG+G  R++AA IE       I WP  +AP+++ +I
Sbjct: 352 KYSSIFNALFTNAHGESLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPRLLAPYQVCVI 411

Query: 353 NIKA--HDQVCRDACEKIYARLSKV-----GCDVFWDDMGE-QIGSQFAVADLLGFPLQV 404
             K    +    +  EK+Y  + +      G +V  DD     IG++   A+ LG+P  +
Sbjct: 412 PPKKGSKETAATEIVEKLYDDVMEAVPQLRG-EVLLDDRTHLTIGNRLKDANKLGYPFVI 470

Query: 405 IVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYAS 439
           I G + + D    E+  + TG    ++ E V+   +
Sbjct: 471 IAGKRALEDPAHFEVWSQNTGEVVFLTKEGVMELLT 506


>gi|189345705|ref|YP_001942234.1| threonyl-tRNA synthetase [Chlorobium limicola DSM 245]
 gi|238692169|sp|B3EEC1|SYT_CHLL2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189339852|gb|ACD89255.1| threonyl-tRNA synthetase [Chlorobium limicola DSM 245]
          Length = 657

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 77/453 (16%), Positives = 153/453 (33%), Gaps = 42/453 (9%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  +   +E  R D      +L L   +  +   G+  WLP G      +   ++EE
Sbjct: 237 KLLKEHIARQEEAKRRDHRKLGTELELFM-LSPEIGSGLPVWLPKGAVIRSELETFLKEE 295

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMT 115
           Q + G + +  P + + +L+  SG Y  Y          +D+       +  P +     
Sbjct: 296 QRKRGYLPVYTPHIGNIELYKRSGHYPYYSDSQFPPLTYHDEDGKQEQYLLKPMNCPHHH 355

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSY 174
            I+ S ++SYR+LP    +    +R E      G++R+R F   D++ +    +      
Sbjct: 356 LIYSSKLRSYRDLPIRLTEFGTVYRHEQSGELNGLVRARGFTQDDSHIYCTPEQLVDE-I 414

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIP 233
                    +F  LG   +  R                + D    Q +  + +  +    
Sbjct: 415 CNAIDLTQFVFGTLGFSEVQTRLS--------------MHDPANQQKYGGTAEIWEQAEK 460

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                 D +     I     + Y    D     + D+L    ++    ++          
Sbjct: 461 DVREAADRMGIDYFIGVGEASFYGPKIDFI---VRDALGRKWQLGTVQVDYVMP------ 511

Query: 294 YSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
                  ++ G+DG+ H    +     G+M     V+     G   +W   V    + + 
Sbjct: 512 --ERFDLSYIGSDGQKHRPVVIHRAPFGSMERFIGVLIEHTAGNFPLWLAPVQAVVLPIA 569

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                 +   D  + I+  L   G  V  D   E+IG +   A++   P  +IVG K   
Sbjct: 570 ------EEVHDYAKTIHTALLAAGIRVEIDTRNEKIGRKIREAEIGKIPCMIIVGQKERD 623

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             ++ ++   +G     ++  +I+      S  
Sbjct: 624 SGEISLRRHRSGDMGSFTVPGLIDILKKEISER 656


>gi|312870359|ref|ZP_07730484.1| threonine--tRNA ligase [Lactobacillus oris PB013-T2-3]
 gi|311094060|gb|EFQ52379.1| threonine--tRNA ligase [Lactobacillus oris PB013-T2-3]
          Length = 600

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 154/441 (34%), Gaps = 36/441 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +    D  +  ++L L    +  +   G+  W+P G      +   I + +   G  
Sbjct: 188 KRQEAREHDHRVIGNQLDLF--FVDPKVGAGLPYWMPKGATIRRTIERYIIDREVADGYE 245

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + D +  SG ++ Y  +M    D  D  M    P +      I++ HI+SYR
Sbjct: 246 HVYTPVLMNLDAYKTSGHWEHYRDDMFPPMDMGDGEMLEIRPMNCPSHIQIYKHHIRSYR 305

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++
Sbjct: 306 DLPMRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVAVDQIRDE-FAKILNLIMDVY 364

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +     R                     + + + + +  D          DD+   
Sbjct: 365 KDFDITDYSFRLSLRD-------------PKNKEKYYGNDEMWDESQKLLKAAMDDLNLD 411

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    D+  +    +L  ++ +S   ++      FG         ++ G 
Sbjct: 412 YYEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLDFMQPDRFG--------LSYVGK 460

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK+H    +    +G M    A +   + G    W             I   ++   D 
Sbjct: 461 DGKEHMPVMIHRGIVGTMERFVAYLTEIYKGAFPTWLAPEQVH-----IIPVSEEKHGDY 515

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+  ++      V  DD  E++G +   A     P  ++VG   V ++ V ++     
Sbjct: 516 AQKLADKMKAAQIRVVVDDRNEKMGYKIREAQTQKVPYTLVVGDDEVKNNAVSVRKYGED 575

Query: 425 IREDMSLEEVINYASHRFSNN 445
            +  MS ++ +N      ++ 
Sbjct: 576 AQNSMSQDDFMNEILADIASY 596


>gi|212219440|ref|YP_002306227.1| prolyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
 gi|212013702|gb|ACJ21082.1| prolyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
          Length = 566

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 130/237 (54%), Positives = 168/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM  + + G+Y+WLPLG + L  V  ++REE
Sbjct: 3   MKVSQFFLATVKETPADAVLASHQLMIRAGMFRKLASGLYTWLPLGLRVLQKVADVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 63  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 123 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S    D+    E  
Sbjct: 183 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSD-ESDYAANIEKA 238



 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 82/203 (40%), Positives = 112/203 (55%), Gaps = 4/203 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
           DD   +N   E+   P  + +D+      D  P+ K     ARGIEVG +F  G KYS  
Sbjct: 365 DDFHWINVNWER-DVPLGSVADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRK 423

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+AT     GK  Y+QMG YGIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H
Sbjct: 424 MNATVVDELGKSRYLQMGCYGIGVSRTVAAAIEQNHDERGIIWPTPMAPFFIALVPVNMH 483

Query: 358 DQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                R+ACEK+Y  L   G +V WDD  E+ G  FA  DL+G P ++++    +    V
Sbjct: 484 KSYRVREACEKLYNELIDAGYEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIV 543

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
           E K R +   E++SLE V++   
Sbjct: 544 EYKARKSKEAENVSLENVLSVFR 566


>gi|149276293|ref|ZP_01882437.1| threonine--tRNA ligase (threonine tRNA synthetase) [Pedobacter sp.
           BAL39]
 gi|149232813|gb|EDM38188.1| threonine--tRNA ligase (threonine tRNA synthetase) [Pedobacter sp.
           BAL39]
          Length = 641

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 154/444 (34%), Gaps = 36/444 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   I +   RD      +L L      +   G+  WLP G    + +   +   Q 
Sbjct: 228 LTEYLHMIEEAKKRDHRKLGKELELFA-FSEKVGMGLPLWLPKGAALRERLVQFLTRAQA 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           ++G  ++  P +   +L++ SG Y+ YGK+  +     +  +     P +     +I++ 
Sbjct: 287 KSGYEQVVTPHIGHKNLYITSGHYEKYGKDSFQPIKTPQEGEEFFLKPMNCPHHCEIYKV 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY++LP  F +    +R E      G+ R R F   DA+ F   P+  K  + K+  
Sbjct: 347 KPRSYKDLPLRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFCR-PDQVKEEFKKVID 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG      +                  D      +   D       S   + 
Sbjct: 406 LVLYVFKSLGFNDYIAQVSLR--------------DPDNKAKYIGSDENWQLAESAIIEA 451

Query: 240 DDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                L ++VE    A Y    D     + D+L    ++    ++      F  +Y+   
Sbjct: 452 AAEKGLPTVVEYGEAAFYGPKLDFM---VKDALGRKWQLGTIQVDYNLPERFELEYTGSD 508

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +            V +     G++    AV+     G   +W             I    
Sbjct: 509 NLK-------HRPVMIHRAPFGSLERFIAVLIEHCAGNFPLW------LSPEQFIILPIS 555

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D  +K+   L+        D   E+IG +   A++   P  +I+G K +++ KV +
Sbjct: 556 EKYEDYAKKVSDELNNSDIRGLIDFRDEKIGRKIRDAEVKKIPYMLIIGEKEMAEGKVSV 615

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           +    G    M+ +E         
Sbjct: 616 RKHGEGDLGAMTQQEFSELLIKEI 639


>gi|329768866|ref|ZP_08260294.1| threonyl-tRNA synthetase [Gemella sanguinis M325]
 gi|328837229|gb|EGF86866.1| threonyl-tRNA synthetase [Gemella sanguinis M325]
          Length = 647

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 156/444 (35%), Gaps = 35/444 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           ++   + +   RD      +L + T    +   G+  WLP G      +   I +++   
Sbjct: 230 QHLHRLQEARERDHRKLGKELGIFTT-SQKVGAGLPLWLPNGATIRRTIERYIVDKEVEL 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + S DL++ SG +D Y ++M    + + + M+  P +      ++++   S
Sbjct: 289 GYDHVYTPIMGSKDLYITSGHWDHYQEDMFPPMEMDHETMVLRPMNCPHHMMVYKNERHS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    ++ +  R E       ++    +  +     + P+  K  +          
Sbjct: 349 YRELPIRIAELGMMHRYEASGAVSGLQRVRGMTLNDAHVFVRPDQLKDEFKLTVGLIQEA 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDFDDII 243
           +  LG+K+   R                  D   T+ +    +  +          D++ 
Sbjct: 409 YKDLGIKNFSYRLS--------------YRDPENTEKYFDDDNMWNNAQQMLKETADELG 454

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    DV  E    ++ + + +S   ++    F    ++       + 
Sbjct: 455 LDYVEAEGEAAFYGPKLDVQVET---AIGKQETLSTIQLD----FLLPERF----ELEYI 503

Query: 304 GADGKDHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G DGK H   +   GI     R+VA ++E            +          I  ++   
Sbjct: 504 GEDGKAHRPVVIHRGIVSTMERMVAFLLEEYKGDLPTWLAPNQVRI------IPVNNDYH 557

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  ++I   L K G  V  DD  E++G +   A     P  +++G K V +  V ++  
Sbjct: 558 YDYSKEIMQELKKAGVKVTIDDRDEKLGYKIREAANKKIPYTLVIGDKEVENKAVNVRTF 617

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +  +++ S  E         +  
Sbjct: 618 GSHDQKEESFVEFKENILKEINER 641


>gi|139948347|ref|NP_758476.2| probable prolyl-tRNA synthetase, mitochondrial isoform 1 [Mus
           musculus]
 gi|123239922|emb|CAM27480.1| prolyl-tRNA synthetase (mitochondrial)(putative) [Mus musculus]
          Length = 475

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 146/456 (32%), Positives = 225/456 (49%), Gaps = 46/456 (10%)

Query: 3   RSKYFLPI-LQENP--------RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P  L+E+          D    S +LML+ G+I   S G Y  +P   +A++ +
Sbjct: 42  LSRMFQPQNLREDQVLSLEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKL 101

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++P+L  A+LW  + R+D  G+E+LRL DR+ K    GPTHEE 
Sbjct: 102 VRVIDQEMQAIGGQKINMPSLSPAELWRATSRWDLMGRELLRLRDRHGKEYCLGPTHEEA 161

Query: 114 MT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T  +      SY+ LP   YQ+  KFRDE RPRFG++R REF MKD Y+FD + E ++ 
Sbjct: 162 VTALVASQKKLSYKQLPLLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQE 221

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y R+F RLGL+ +  RA+ G IGG +SHEF +  D GE ++           
Sbjct: 222 TYGLVCDAYCRLFDRLGLQWMKARADVGSIGGTMSHEFQLPVDIGEDRLVVCPSC----- 276

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                   A T  +   +      +      +GIEVGH FY  T
Sbjct: 277 ---------------------HFSANTEILDLSQKICPDCQGPLTETKGIEVGHTFYLST 315

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F  A G+    +MG YG+G  R++AA IE       I WP  +AP+++ +I
Sbjct: 316 KYSSIFNALFTNAHGESLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPRLLAPYQVCVI 375

Query: 353 NIKA--HDQVCRDACEKIYARLSKV-----GCDVFWDDMGE-QIGSQFAVADLLGFPLQV 404
             K    +    +  EK+Y  + +      G +V  DD     IG++   A+ LG+P  +
Sbjct: 376 PPKKGSKETAATEIVEKLYDDIMEAVPQLRG-EVLLDDRTHLTIGNRLKDANKLGYPFVI 434

Query: 405 IVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYAS 439
           I G + + D    E+  + TG    ++ E V+   +
Sbjct: 435 IAGKRALEDPAHFEVWSQNTGEVVFLTKEGVMELLT 470


>gi|237744663|ref|ZP_04575144.1| threonyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|229431892|gb|EEO42104.1| threonyl-tRNA synthetase [Fusobacterium sp. 7_1]
          Length = 637

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 161/443 (36%), Gaps = 41/443 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  K+   + +   RD      +L L    + ++  G   +LP G    + +  + R+E 
Sbjct: 226 KLKKHLKLVEEAEKRDHRKLGKELELF--FLSEYGPGFPFFLPKGMIVRNVLVDLWRKEH 283

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +   +++  P + + +LW  SG + +Y + M   ++ ++      P +       F+  
Sbjct: 284 EKAEYLQLETPIMLNKELWEISGHWFNYRENMYT-SEIDEVEFAIKPMNCPGGVLAFKHQ 342

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SY++LP    ++    R E      G+MR R F   D++ F    +        +   
Sbjct: 343 LHSYKDLPARLAELGKVHRHEFSGALHGLMRVRSFTQDDSHIFMTPEQVQDE-IIGVVNL 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + + +L      +   + P     S E                   D    +     D
Sbjct: 402 IDKFYSKLFGFEYEIELSTKPEKAIGSQE-----------------IWDMAESALAGALD 444

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     I     A Y    D    K+ D++    +     ++    F    ++      
Sbjct: 445 KLGRKYKINPGDGAFYGPKLDF---KIKDAIGRMWQCGTIQLD----FNLPERFD----V 493

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G DG+ H    +     G++     ++   + G   +W   V    +++      + 
Sbjct: 494 TYIGEDGEKHRPVMLHRVIYGSIERFIGILIEHYAGAFPMWLAPVQVKVMTI------ND 547

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEI 418
            C    ++I A+L ++G     DD  E IG +   A+     P+Q+I+G   V + +V I
Sbjct: 548 ECVPYAKEIMAKLDELGIRAELDDRTETIGYKIREANGRYRIPMQLIIGKNEVENKEVNI 607

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  +   SL+E  NY    
Sbjct: 608 RRFGSKDQFSKSLDEFYNYVVDE 630


>gi|258512139|ref|YP_003185573.1| threonyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478865|gb|ACV59184.1| threonyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 648

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/434 (16%), Positives = 157/434 (36%), Gaps = 34/434 (7%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L + T +  +  +G+  WLP G K    +   I + +   G   +  
Sbjct: 239 EARERDHRRLGKELEIFT-LSPEVGQGLPLWLPNGAKIRRIIERYIVDLEESLGYQHVYT 297

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P L + +L+  SG ++ Y  +M      +++ ++  P +      +++  + SYR LP  
Sbjct: 298 PHLANVELYKISGHWEHYKDDMYPPMKIDNEELVLRPMNCPHHMMVYKHRLHSYRELPIR 357

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             ++    R E+     G+ R R   + DA+ F   P+  +  +  +     R++   G+
Sbjct: 358 IAELGTMHRYEMSGALAGLQRVRAMTLNDAHIFCR-PDQIEQEFTGVVRLIQRVYKDFGI 416

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                R                       +   + +  +    +      D+       E
Sbjct: 417 DDYYHRLS-------------YRDPKNTEKYVQNDEMWELAQSTLRKVMLDLGLEFVEAE 463

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    DV   ++  +L +++ +S   ++    F+   ++    +  + G DG+ H
Sbjct: 464 GEAAFYGPKLDV---QVRTALGKDETLSTIQLD----FHLPNRF----NLEYVGEDGERH 512

Query: 311 YVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              +   G +G M    A +   + G    W         + + + +         E++ 
Sbjct: 513 RPVVIHRGVVGTMERFVAFLIEQYKGAFPTW------LAPTQVVVASVADEFAGYAEEVA 566

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A+L ++G     D    +IG +   A     P  ++VG++   +  V ++    G    M
Sbjct: 567 AKLRELGIRAEADVSDNKIGYKIRQAQTHKIPYTLVVGAREREEGSVSVRKYQAGDLGAM 626

Query: 430 SLEEVINYASHRFS 443
            L++ +        
Sbjct: 627 PLDQFVRQIQDEIE 640


>gi|293603409|ref|ZP_06685836.1| proline--tRNA ligase [Achromobacter piechaudii ATCC 43553]
 gi|292818182|gb|EFF77236.1| proline--tRNA ligase [Achromobacter piechaudii ATCC 43553]
          Length = 576

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 125/265 (47%), Positives = 172/265 (64%), Gaps = 5/265 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y +  L+E P +AE+ASH+LM R GMI + + GIY+++PLG K +  V AI+REE
Sbjct: 1   MRASNYHINTLKEAPSEAEVASHQLMTRAGMIRKLAGGIYTYMPLGLKIIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GAIE+ +P +Q A+LW ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNASGAIELLMPVVQPAELWQESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G+  SY+ M+ +
Sbjct: 121 EIHSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGALKSYDTMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-- 238
           Y+RIF+RLGL+   + A++G IGG  SHEF V+A+TGE  +  +    D+    E  +  
Sbjct: 181 YMRIFNRLGLQFRAVAADTGSIGGTRSHEFQVIAETGEDLLVYNA-ETDYAANIELAEAV 239

Query: 239 --FDDIISLNSIVEQWTAPYAATSD 261
             +    +    +     P AA  +
Sbjct: 240 ALYPTRGAATQTMADVATPGAAKCE 264



 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/189 (36%), Positives = 101/189 (53%), Gaps = 3/189 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGH+FY G KYS  + ATF    GK   ++MG 
Sbjct: 387 VADLRNVVAGDPSPDGKGTLSIQRGIEVGHVFYLGKKYSEALKATFLDETGKPAVLEMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE +HD +GIIWP ++APF++ +  +     +  RD  +K+Y  L   
Sbjct: 447 YGIGVTRIVGAAIEQNHDARGIIWPRAIAPFEVVICPVGWGKSETVRDTAQKLYESLLAR 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD   + G  FA  +L+G PL+V VG + ++D  VE++ R       + +E  +
Sbjct: 507 GVDVILDDRDARPGVMFAEWELIGAPLRVTVGERGLNDGVVELQARRETEAAKIPVESAL 566

Query: 436 NYASHRFSN 444
                +   
Sbjct: 567 EAVLTKLDT 575


>gi|222528589|ref|YP_002572471.1| prolyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
 gi|254782881|sp|B9MPD7|SYP_ANATD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|222455436|gb|ACM59698.1| prolyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
          Length = 572

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 121/265 (45%), Positives = 160/265 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRSGAQEVHMSALMPKELWEESGRWAVFGPEMFRIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+   G   SY KM+ +
Sbjct: 121 EISSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDIDENGLDISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++   K         +    D
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYCKACGYAANLEKAECLD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
           + +      ++    Y        E
Sbjct: 241 EPVENKEEPKEKQEVYTPNVRTIEE 265



 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 103/189 (54%), Gaps = 4/189 (2%)

Query: 261 DVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N    D  P+    K    RGIEVGHIF  GTKY+   +  +    G+   + MG Y
Sbjct: 380 DLRNITQDDLCPKCRSQKVTIERGIEVGHIFKLGTKYTQAFNCVYTDEKGEKKLMIMGCY 439

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R  AA+IE  HD  GIIWP +VAP+++ ++ +   D+  +    +IY  L + G 
Sbjct: 440 GIGINRTAAAIIEQMHDEDGIIWPITVAPYEVIIVPVNVKDENQKKIAFEIYENLQRNGV 499

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +F  ADL+G P +V VG K +S+ K+EI++R T    ++ +E+ I  
Sbjct: 500 EVLIDDRDERAGVKFKDADLIGIPFRVTVGKK-ISEGKLEIRNRRTKESFEVEIEKAIEV 558

Query: 438 ASHRFSNNR 446
             +     +
Sbjct: 559 VINLIREEK 567


>gi|325915741|ref|ZP_08178043.1| prolyl-tRNA synthetase, family II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538005|gb|EGD09699.1| prolyl-tRNA synthetase, family II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 564

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 155/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L+++DR  +   Y PT EE   D  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKISDRKQQEFCYSPTAEEAAADFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE  +       D+    E
Sbjct: 181 YTRIFTRLGLEFRAVQADSGAIGGDASQEFHVIADSGEDSLAF-STASDYAANVE 234



 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 1/166 (0%)

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            +   ARGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +H
Sbjct: 397 GELRLARGIEVGHVFQLGSQYAQALQATVIDESGKPAVLKMGCYGIGISRIVAAAIEQNH 456

Query: 334 DGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           D  GI+WP  +AP+++ +  I    D     A + +   L   G D   DD G + G+ F
Sbjct: 457 DDAGILWPAPMAPWQVVVCVINPKQDAQVVAAAQALLDELLAAGLDAALDDRGLRPGAMF 516

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           A  +LLG P +V+V  + ++    E + R     E++    + +  
Sbjct: 517 ADMELLGIPHRVVVSERGLAAGTFEYRARTAEAAENLDKAGLFSRL 562


>gi|144899402|emb|CAM76266.1| Threonyl-tRNA synthetase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 638

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 72/438 (16%), Positives = 150/438 (34%), Gaps = 40/438 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      ++ L    + + + G   W   G      V + +R       
Sbjct: 233 YLHMLEEAEKRDHRRLGREMNLF--HLQEEAVGAVFWHQKGWALYRTVESYMRNRLEAEN 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG  D + + M  +  ++++ +   P +      IFR  IKSY
Sbjct: 291 YQEVKTPQLVDFSLWEASGHADKFSESMFTIKTQDERHLAVKPMNCPCHVQIFRQGIKSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G+MR R F   DA+ F    + +  +          +
Sbjct: 351 RDLPLRMAEFGSCHRYEPSGALHGIMRVRAFTQDDAHIFCTEDQITSETIAF-CQLLKLV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++    P     S E                   D    +          
Sbjct: 410 YQDFGFTDVRVKFSDRPEKRAGSDE-----------------TWDKAESALLAAAQAAGL 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             ++     A Y    +     L D++  + +     ++    F    +    + A++  
Sbjct: 453 ETTLNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVD----FVLPER----LDASYTA 501

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +    +G+      ++  +  G+  +W   +     +++          D
Sbjct: 502 EDGSRRRPVMLHRAVLGSFERFIGILIENFAGRFPLWLSPIQVVVATIV------SDADD 555

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + + A+L   G  V  D   E+I  + A       P+ ++VG +   +  V ++   +
Sbjct: 556 YAQSVAAKLRGAGLRVETDLRNEKINKKVAEHSNAKVPVLLVVGRREAEEGTVAVRRLGS 615

Query: 424 GIREDMSLEEVINYASHR 441
             +E ++L++ +    + 
Sbjct: 616 QGQEFLALDQALATLVNE 633


>gi|301300332|ref|ZP_07206537.1| threonine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852068|gb|EFK79747.1| threonine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 649

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 150/443 (33%), Gaps = 37/443 (8%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           L   +E   RD  +  ++L L    +  +   G+  W+P G      +   I +++   G
Sbjct: 235 LQRQKEARERDHRVIGNELDLF--FVDPKVGAGLPYWMPNGATIRRVIERYIIDKEVAWG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKS 124
              +  P L +  L+ +SG +D Y ++M    D  D  M    P +      ++  H +S
Sbjct: 293 FQHVYTPVLANLSLYKQSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYNHHKRS 352

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    ++ +  R E       +     +  +     + P+  +     +      +
Sbjct: 353 YRELPLRIAELGMMHRYEKSGALTGLSRVREMTLNDGHDFIEPDHIEDEIKTLIKLMTEV 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS-ENTDFDDII 243
           ++   +     R                  D   T+ +   D M     S      DD+ 
Sbjct: 413 YNDFDITDYRFRLS--------------YRDPKNTEKYFDDDEMWEKSQSKLKAAMDDMG 458

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    DV  +    +L   + +S   ++    F    ++       + 
Sbjct: 459 LEYFEAEGEAAFYGPKIDVQTKT---ALGGEETLSTIQLD----FLLPERFD----LKYI 507

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG++H    +    +  M    A +   + G    W          +  I   + +  
Sbjct: 508 GADGEEHRPVMVHRGIVSTMERFTAYLTEMYKGAFPTWLAPHQ-----VDIIPVKNDLHM 562

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D    + ++L   G  V  DD  E++G +   A +   P  +++G + VS+  V ++   
Sbjct: 563 DYVNDLSSKLRAHGIRVTVDDRNEKMGYKIRQAQVNKIPYTLVIGDEEVSNGTVTVRKYG 622

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 M+  E  N       N 
Sbjct: 623 EEKTNTMTKAEFKNLLFEDIENY 645


>gi|253583421|ref|ZP_04860619.1| proline-tRNA ligase [Fusobacterium varium ATCC 27725]
 gi|251833993|gb|EES62556.1| proline-tRNA ligase [Fusobacterium varium ATCC 27725]
          Length = 569

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 131/297 (44%), Positives = 180/297 (60%), Gaps = 23/297 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AE ASHKL+LR GMI + + G+Y++LPLG KAL  V  I+REE
Sbjct: 1   MRFSKSYIKTLKETPKEAETASHKLLLRAGMIKKLTSGVYTYLPLGYKALRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G+ E+ +P LQ A+LW ESGR+D  G  M++L DRN +  + GPTHEEV+TD+ R+
Sbjct: 61  MNRAGSQEILMPVLQPAELWKESGRWDVMGPLMMKLQDRNKRDFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP + YQIQ KFRDE+RPRFG+MR REF+MKD YSF  T E     +  M  +
Sbjct: 121 DISSYKSLPLSLYQIQTKFRDEIRPRFGLMRGREFVMKDGYSFHATVESLDEEFLNMRDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------- 232
           Y RIF R GLK  P+ A+SG IGG  S EF VLAD+GE ++                   
Sbjct: 181 YSRIFSRCGLKFRPVEADSGAIGGSGSQEFHVLADSGEDEIIYCDSCSYAANVETAVSKV 240

Query: 233 ---------PSENTDFDDIISLNSIVEQWTAPYAATS------DVHNEKLFDSLPEN 274
                     +E  D  ++  ++ IV+    PY+ T       D+ N++++  L   
Sbjct: 241 EAAPKEEIKNAELIDTPNVAKIDDIVQFLNIPYSKTVKAMMYRDMGNDQVYMVLIRG 297



 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 102/189 (53%), Gaps = 3/189 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +DV   K  ++      K  SARGIEVGHIF  G KYS  M+ATF    G+   + MG 
Sbjct: 382 VADVKTVKAGETCERCGGKLHSARGIEVGHIFKLGDKYSKAMNATFLDDKGESKVMIMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +A+ IE ++D  GIIWP ++AP+ + +I     ++      E+IY  L   G
Sbjct: 442 YGIGVSRTLASAIEQNNDEFGIIWPTALAPYIVDVIPANIKNEEQVKVAEEIYEALLNDG 501

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +   DD  E+ G +F  ADL+GFP +V+ G K   +  VE+K R TG   ++S ++V++
Sbjct: 502 IEAMIDDRDERPGFKFKDADLIGFPFKVVSGKK-AGEGIVELKIRRTGETIELSKDDVVS 560

Query: 437 YASHRFSNN 445
                    
Sbjct: 561 TVRELMKKY 569


>gi|297623866|ref|YP_003705300.1| threonyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
 gi|297165046|gb|ADI14757.1| threonyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
          Length = 665

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 152/443 (34%), Gaps = 37/443 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L + T +      G+  WLP G   ++ +  + +E + R G 
Sbjct: 241 LWRLEEAKKRDHRKLGAELEIFT-LDDDIGPGLPLWLPRGAVIVEEIEKLAKEMERRAGY 299

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            ++  P +    L+  SG    Y + M    + ++      P +      IF +  +SYR
Sbjct: 300 QQVRTPHVTKEQLFTRSGHLPYYAESMFPPMELDNVRYYLKPMNCPFHHKIFAARPRSYR 359

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    +    +R E      G+MR R   M DA+ +  TPE  +  +  +   YL  F
Sbjct: 360 ELPLRLAEYGTCYRYEDHGALMGLMRVRSMQMNDAHIYC-TPEQFEDEFMGVIALYLEYF 418

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G++   MR                 +  G  + + +   +     +      +   +
Sbjct: 419 RLFGIRDYVMRLS-------------KHSRAGLGKKYVNNPELWEQTEAMVRGALERGGI 465

Query: 246 NSI-VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           N I VE   A Y    DV   +++  +     ++   ++      FG          +  
Sbjct: 466 NFIEVEDEAAFYGPKIDV---QIYSVIGREFTLATNQVDFAVPARFG--------LEYVA 514

Query: 305 ADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            DG             +   R+V  ++E       +                        
Sbjct: 515 EDGSRKTPLCLHRAPLSTHERLVGFLLEHFAGDFPLWLAPEQVRVVPIA-------DRHN 567

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              + + ARL++ G     D  GE++ ++   A+LL  P  VIVG K V    +  + R 
Sbjct: 568 AYAQSLKARLAEAGLRAEADLRGERMNAKVRDAELLKVPYTVIVGDKEVEAGALSFRSRK 627

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
              ++ +S+E  + +        
Sbjct: 628 EPEQKGVSVEAFVAHLQAHVGAR 650


>gi|217077729|ref|YP_002335447.1| threonyl-tRNA synthetase [Thermosipho africanus TCF52B]
 gi|217037584|gb|ACJ76106.1| threonyl-tRNA synthetase [Thermosipho africanus TCF52B]
          Length = 636

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/426 (18%), Positives = 153/426 (35%), Gaps = 43/426 (10%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L +L+E   RD      KL L    I+   + G+  +LP G   L+ + +  R+     
Sbjct: 232 YLKMLEEAKKRDHRKLGPKLGLF--FINTDVAAGMPIFLPKGATILNELMSFSRQLHKEY 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +  LW +SG +D Y   M    ++ +      P +      I+++ + S
Sbjct: 290 GYKEVMTPLIMNVKLWHQSGHWDHYKDNM-YFTEKEETEYAVKPMNCPGHILIYKNDVVS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP   ++     R E      G++R R F   DA+ F    +  +       V  + 
Sbjct: 349 YRDLPIRLFEFGKVHRYERSGVLHGLLRVRAFTQDDAHIFCRQDQIEEE--VSSVVRLID 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
             ++    +      + P       E                   +    +     +DI 
Sbjct: 407 ELYKPFGFTYRATLSTMPEDHMGDEE-----------------TWEKATNALKKVLEDIK 449

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D H   + DSL    + +   ++    F    ++       + 
Sbjct: 450 LDFDIAEGEGAFYGPKVDFH---VKDSLGREWQCATIQLD----FQMPERFD----LKYV 498

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG +   V + +   G++     ++    +     +P  ++P ++ ++ +        
Sbjct: 499 DKDGIEKRPVMIHTAKYGSLERFFGILI---EHYAGAFPLWISPVQVLVLPVSDK---YI 552

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +K+   LS+    V  D   E +G +   A +   P  +IVG       K+ ++ R 
Sbjct: 553 DYAKKVARLLSESNIRVEVDSRNETLGYKIREAQISKVPYMIIVGENEEKSGKISVRSRD 612

Query: 423 TGIRED 428
               +D
Sbjct: 613 GVEEKD 618


>gi|139948914|ref|NP_001077356.1| probable prolyl-tRNA synthetase, mitochondrial isoform 2 [Mus
           musculus]
 gi|159575933|emb|CAP19280.1| prolyl-tRNA synthetase (mitochondrial)(putative) [Mus musculus]
          Length = 511

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 146/456 (32%), Positives = 225/456 (49%), Gaps = 46/456 (10%)

Query: 3   RSKYFLPI-LQENP--------RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P  L+E+          D    S +LML+ G+I   S G Y  +P   +A++ +
Sbjct: 78  LSRMFQPQNLREDQVLSLEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKL 137

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++P+L  A+LW  + R+D  G+E+LRL DR+ K    GPTHEE 
Sbjct: 138 VRVIDQEMQAIGGQKINMPSLSPAELWRATSRWDLMGRELLRLRDRHGKEYCLGPTHEEA 197

Query: 114 MT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T  +      SY+ LP   YQ+  KFRDE RPRFG++R REF MKD Y+FD + E ++ 
Sbjct: 198 VTALVASQKKLSYKQLPLLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSSEAAQE 257

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y R+F RLGL+ +  RA+ G IGG +SHEF +  D GE ++           
Sbjct: 258 TYGLVCDAYCRLFDRLGLQWMKARADVGSIGGTMSHEFQLPVDIGEDRLVVCPSC----- 312

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                   A T  +   +      +      +GIEVGH FY  T
Sbjct: 313 ---------------------HFSANTEILDLSQKICPDCQGPLTETKGIEVGHTFYLST 351

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F  A G+    +MG YG+G  R++AA IE       I WP  +AP+++ +I
Sbjct: 352 KYSSIFNALFTNAHGESLLAEMGCYGLGVTRILAAAIEVLSTEDCIRWPRLLAPYQVCVI 411

Query: 353 NIKA--HDQVCRDACEKIYARLSKV-----GCDVFWDDMGE-QIGSQFAVADLLGFPLQV 404
             K    +    +  EK+Y  + +      G +V  DD     IG++   A+ LG+P  +
Sbjct: 412 PPKKGSKETAATEIVEKLYDDIMEAVPQLRG-EVLLDDRTHLTIGNRLKDANKLGYPFVI 470

Query: 405 IVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYAS 439
           I G + + D    E+  + TG    ++ E V+   +
Sbjct: 471 IAGKRALEDPAHFEVWSQNTGEVVFLTKEGVMELLT 506


>gi|134299814|ref|YP_001113310.1| prolyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
 gi|172044305|sp|A4J5Y2|SYP_DESRM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|134052514|gb|ABO50485.1| prolyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
          Length = 569

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 113/252 (44%), Positives = 162/252 (64%), Gaps = 1/252 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AE+ SH+L+LR G I + + G+Y++LPL Q+ L  +  IIREE
Sbjct: 1   MRVSQMLVPTLREVPAEAEVVSHQLLLRAGFIRKTASGVYTYLPLAQRVLKKLRQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+ +P +Q A++W+ESGR+  YG E+ RL DR+D+    GPTHEEV+T + R 
Sbjct: 61  IDKQGGQELLMPIIQPAEMWLESGRWHVYGPELFRLKDRHDRNFCLGPTHEEVITILIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ +P   YQIQ K+RDE RPRFG++R REF+MKD YSFD    G   SY KM  +
Sbjct: 121 EVRSYKQMPLLLYQIQNKYRDERRPRFGLLRGREFIMKDLYSFDRDEAGLDISYQKMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R G+K  P+ A+SG IGG  +HEF+VLA++GE  +    D  D+    E     
Sbjct: 181 YTSIFSRCGVKFRPVEADSGAIGGSSTHEFMVLAESGEAAILYCSDC-DYAANVEKATTL 239

Query: 241 DIISLNSIVEQW 252
               L+  ++Q 
Sbjct: 240 PAAGLDPAIQQL 251



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/186 (37%), Positives = 108/186 (58%), Gaps = 2/186 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+   K  +  P+     + ARGIEVG IF  GTKYS  + ATF   +GK+  + MG 
Sbjct: 381 VEDIRMVKAGEPCPKCGAQLLEARGIEVGQIFKLGTKYSKALGATFLDENGKEQPIVMGC 440

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +AA IE ++D  GIIWP S+AP++  +I +   D       E++Y  L++ G
Sbjct: 441 YGIGVSRTMAAAIEQNYDKDGIIWPASIAPYQAIVIPVAPKDDNQMKIAEELYKALNQAG 500

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +   DD  E+ G +F  ADL+G+PL+++VG+K V++  VEI+ R +G  + +S+++ + 
Sbjct: 501 VETILDDRSERPGVKFKDADLIGYPLRIVVGNKAVTEGVVEIRQRRSGQTDLVSVKDSVP 560

Query: 437 YASHRF 442
                 
Sbjct: 561 KILEIL 566


>gi|145219006|ref|YP_001129715.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Prosthecochloris vibrioformis DSM 265]
 gi|189083618|sp|A4SCK4|SYT_PROVI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145205170|gb|ABP36213.1| Ser-tRNA(Thr) hydrolase [Chlorobium phaeovibrioides DSM 265]
          Length = 666

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 81/452 (17%), Positives = 153/452 (33%), Gaps = 40/452 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD      +L L   +  +   G+  WLP G      + + ++EE
Sbjct: 237 KLLKAHLSALEEAKKRDHRKLGTELELFM-LSPEIGSGLPVWLPKGAIIRQELESFLKEE 295

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMT 115
           Q R G + +  P + + DL+  SG Y  Y          +D+       +  P +     
Sbjct: 296 QRRRGYLPVYTPHIGNIDLYKRSGHYPYYSDSQFPPLTYHDEEGKAEQYLLKPMNCPHHH 355

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSY 174
            I+ S ++SYR+LP    +    +R E      G++R+R F   D++ +    +      
Sbjct: 356 LIYSSKMRSYRDLPVRLAEFGTVYRHEQSGELNGLVRARGFTQDDSHIYCRPDQLVDE-I 414

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                    +F  LG   +  R               +      ++   + D  +     
Sbjct: 415 CNAIDLTRYVFATLGFTEVETRLS-------------MHDPLNPSKYGGTADVWEQAEKD 461

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                D +     I     + Y    D     + D+L    ++    ++           
Sbjct: 462 VREAADRMKINYFIGVGEASFYGPKIDFI---VRDALGRKWQLGTVQVDYVMP------- 511

Query: 295 SLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                 ++ G+DG+ H    +     G+M     V+     G   +W   V    + +  
Sbjct: 512 -ERFDLSYVGSDGQKHRPIVIHRAPFGSMERFIGVLIEHTAGNFPLWLAPVQAVVLPIA- 569

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
                +   D   ++   + + G  V  D   E+IG +   A+L   P  VIVG K    
Sbjct: 570 -----EDVHDYGSEVRDAMHRAGIRVELDVRNEKIGRKIREAELAKIPFMVIVGQKEKEG 624

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             V ++    G     S++E+     +  +  
Sbjct: 625 GSVSLRRHRIGDEGAFSIQEMTEKLLNEIAAK 656


>gi|153009484|ref|YP_001370699.1| threonyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
 gi|151561372|gb|ABS14870.1| threonyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
          Length = 661

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 151/445 (33%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 236 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 293

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 294 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDETDDDRVFALKPMNCPGHVMIF 353

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 354 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLRIN 413

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 414 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMSVL------------EKI 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 461 QQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 511

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   D +      +     G+M     ++  +  G   +W   V     ++     
Sbjct: 512 --AFYIDKDSEKRQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 565

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +   +  A+L   G  V  D   E+I  +     L   P+ ++ G +   ++ V
Sbjct: 566 --SDADEYAAQAAAKLKAAGLQVSTDLRNEKINYKVREHSLQKVPVILVCGKREAEENTV 623

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 624 NMRRLGSRDQESMTLDEAIARLVEE 648


>gi|307257929|ref|ZP_07539683.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306863576|gb|EFM95505.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 571

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 122/243 (50%), Positives = 158/243 (65%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E  +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAV 239

Query: 241 DII 243
            + 
Sbjct: 240 AVG 242



 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     ++  +  A     +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNVNWERDAAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
            AT +G DGK   + MG YGIG  RVVAA IE  HD +  I   D +APF ++++ +   
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFSEELYRTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++ +      
Sbjct: 544 EYKNRRTGEKQMIAKDQLLAFLKENVK 570


>gi|190151185|ref|YP_001969710.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307264534|ref|ZP_07546118.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|226731421|sp|B3GZ82|SYP_ACTP7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189916316|gb|ACE62568.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306870133|gb|EFN01893.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 571

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 122/243 (50%), Positives = 158/243 (65%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E  +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAV 239

Query: 241 DII 243
            + 
Sbjct: 240 AVG 242



 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 70/197 (35%), Positives = 108/197 (54%), Gaps = 4/197 (2%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +        +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M AT +G DGK
Sbjct: 374 ERDVAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAMKATVQGDDGK 433

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA-HDQVCRDACE 366
              + MG YGIG  RVVAA IE  HD +  I   D +APF ++++ +     +  +   E
Sbjct: 434 PLVMTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMHKSESVQQFSE 493

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++E K+R TG +
Sbjct: 494 ELYRTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEIEYKNRRTGEK 553

Query: 427 EDMSLEEVINYASHRFS 443
           + ++ ++++ +      
Sbjct: 554 QMIAKDQLLAFLKENVK 570


>gi|165977268|ref|YP_001652861.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|226731422|sp|B0BT03|SYP_ACTPJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|165877369|gb|ABY70417.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 571

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 121/243 (49%), Positives = 157/243 (64%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQ Q KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQTQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E  +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAV 239

Query: 241 DII 243
            + 
Sbjct: 240 AVG 242



 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 111/207 (53%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     ++  +        +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNVNWERDVAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
            AT +G DGK   + MG YGIG  RVVAA IE  HD +  I   D +APF ++++ +   
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFSEELYRTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++ +      
Sbjct: 544 EYKNRRTGEKQMIAKDQLLAFLKENVK 570


>gi|298206753|ref|YP_003714932.1| threonyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
 gi|83849384|gb|EAP87252.1| threonyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
          Length = 648

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 152/436 (34%), Gaps = 36/436 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T    +  +G+  WLP G    + +   +++ Q + G   +  P
Sbjct: 238 AKRRDHRKLGKELSLFT-FSQKVGQGLPLWLPKGAALRERLENFLKKAQKKAGYEMVVTP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG Y  YG++  +        +  +  P +     +I+ +   SYR+LP 
Sbjct: 297 HIGQKELYVTSGHYAKYGEDSFQPISTPAEGEEFLLKPMNCPHHCEIYNNSPWSYRDLPK 356

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + +    +R E      G+ R R F   DA+ F  TP+     + K+    + +F  LG
Sbjct: 357 RYAEFGTVYRYEQSGELHGLSRVRGFTQDDAHIFC-TPDQLDEEFKKVIDLTMYVFSSLG 415

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            ++   +                       +    ++  +    +  +   D      + 
Sbjct: 416 FENFTTQVSLRD-------------PENPDKYIGKEENWEKAENAILSAVKDKGLNYIVE 462

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D     + D+L  + ++    ++                 T+KG+D + 
Sbjct: 463 TGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERFDLTYKGSDNEL 511

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H    +     G+M    A++     G   +W        +SL       +   +  +K+
Sbjct: 512 HRPVMIHRAPFGSMERFVAILLEHTAGNFPLWLMPEQAIILSL------SEKYENYSKKV 565

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L         D   E +G +   A++   P  +IVG +  +D  V ++         
Sbjct: 566 LNLLENHEIRALTDHRSETMGKKIREAEVNKIPYMLIVGEQEENDGTVSVRKHGGEDLGT 625

Query: 429 MSLEEVINYASHRFSN 444
           M++EE     +   S 
Sbjct: 626 MTVEEFSKLVNEEISK 641


>gi|224541524|ref|ZP_03682063.1| hypothetical protein CATMIT_00694 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525561|gb|EEF94666.1| hypothetical protein CATMIT_00694 [Catenibacterium mitsuokai DSM
           15897]
          Length = 585

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 156/441 (35%), Gaps = 34/441 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L +         KG+  WLP G      ++  I  ++   G 
Sbjct: 172 LQLLEEAKERDHRKLGKELGIFM-FADIVGKGLPMWLPNGFTVRRLLSDYIMNKELELGY 230

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P+L +  L+ +SG +  Y  +M    + +D+A +  P +      +++S + SYR
Sbjct: 231 EHVMTPSLGNVKLYKKSGHWAHYKDDMFPAMELDDEAYVLRPMNCPHHMVMYKSTLHSYR 290

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +I   FR E      G+ R+R F   D++ F    + ++  +  +    L ++
Sbjct: 291 DLPVRIAEIANDFRFEASGALTGIERARAFTQNDSHIFCRPDQIAQE-FKNVAHLILDVY 349

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G K    R                       + F + +  +           ++   
Sbjct: 350 KDFGFKDYSFRLSLRDKNNKE-------------KYFGNDELWEKSENELREVLKEMDVE 396

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV   ++  +L  +  +S   ++                 T+   
Sbjct: 397 FYEAEGEAAFYGPKLDV---QVKSALGHDVTLSTIQLDYQLP--------ERFELTYVDE 445

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +G     V +    +G++    A +     G   +W          +  I    +   + 
Sbjct: 446 NGDKVRPVVIHRAILGSLDRFIAFLLEETKGNLPLWLA-----PTQVQVIPVKLEYHDEY 500

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++ A+L K    V  D+  E++G +   A L   P Q+++G     +  V  +     
Sbjct: 501 AKEVVAKLRKAHFRVNNDNRDEKLGYRIREAQLKKIPYQLVLGDNERDNGTVTYRKHGEK 560

Query: 425 IREDMSLEEVINYASHRFSNN 445
            +  ++ +E +   +    N 
Sbjct: 561 KQTTVTFDEFVELLNTEVENK 581


>gi|310779485|ref|YP_003967818.1| prolyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
 gi|309748808|gb|ADO83470.1| prolyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
          Length = 570

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 121/246 (49%), Positives = 163/246 (66%), Gaps = 1/246 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  ++  L+E P+DAE+ SHKLMLR GMI + + G+Y++LPLG KAL  V  I+REE
Sbjct: 1   MKFSNLYVKTLKETPKDAEVISHKLMLRAGMIKKLASGVYTYLPLGYKALRKVEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G+ E+ +P LQ +++W ESGR+D+ G EM+R+ DR+D+  + GPTHEEV+TDI R+
Sbjct: 61  MERAGSQEIFMPVLQPSEIWQESGRWDTMGPEMMRIKDRHDREFVLGPTHEEVITDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   YQIQ KFRDE RPRFG+MRSREFLMKDAYSF  + E   + +  M  +
Sbjct: 121 DISSYKSLPMNLYQIQTKFRDERRPRFGLMRSREFLMKDAYSFHASEECLDNEFENMKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK   + A+SG IGG  S EF VLA++GE ++        +    E  +  
Sbjct: 181 YTRIFERCGLKFRSVEADSGAIGGSGSQEFHVLAESGEDEIIYCDSC-GYAANLEKAESV 239

Query: 241 DIISLN 246
             I   
Sbjct: 240 AFIPEY 245



 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/187 (38%), Positives = 100/187 (53%), Gaps = 3/187 (1%)

Query: 261 DVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   K  +  P       SARGIE GH+F  GTKYS  M ATF   +GK + + MG YG
Sbjct: 385 DIRTVKKDEGCPRCSGTLSSARGIETGHVFKLGTKYSESMKATFLDVNGKSNVMMMGCYG 444

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R  AA IE ++D  GIIWP ++AP+ + ++     ++      EKIY  L + G D
Sbjct: 445 IGVSRTTAAAIEQNYDENGIIWPSAIAPYVVDVVPANMKNKDQVALGEKIYTELLEAGID 504

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              DD  E+ G +F  ADL+GFP +V+ G +  ++  +EIK R TG   D+  EEV+   
Sbjct: 505 TVLDDRNERPGFKFKDADLIGFPFKVVSGKQ-AAEGIIEIKIRKTGETLDVKSEEVVTTI 563

Query: 439 SHRFSNN 445
                  
Sbjct: 564 KELMKKY 570


>gi|317153730|ref|YP_004121778.1| threonyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943981|gb|ADU63032.1| threonyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
          Length = 645

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 84/440 (19%), Positives = 151/440 (34%), Gaps = 40/440 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             K+   + +   RD      +L L +        G+  W P G      +    R+E  
Sbjct: 227 LKKHLDRLEEARKRDHRKLGVQLDLFSTH-EDVGGGMILWHPKGGLIRTILEDFERKEHL 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +   +LW +SG YD+Y + M    + ++++    P +      IF+  I
Sbjct: 286 KRGYQIVQGPLILKRELWEKSGHYDNYRENM-YFTEIDEQSYGIKPMNCLSHMLIFKRKI 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  ++++ +  R E      G+MR R F   DA+      +             
Sbjct: 345 QSYRDLPQRYFELGVVHRHEKSGVLHGLMRVRSFTQDDAHLICRPDQLQTEIIGVFNFV- 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                               I G    EF     T   +   +    +    +     D 
Sbjct: 404 ------------------RDIMGLFGFEFEAEISTRPEKSVGTDADWELATAALKDALDA 445

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +    ++ E   A Y    D+    L DSL    + +    +    F    ++       
Sbjct: 446 LGKPYTVNEGDGAFYGPKIDII---LRDSLDRRWQCATIQCD----FTLPDRFD----LV 494

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DG+ H    +    +G++     V+     G   +W   V    +++         
Sbjct: 495 YVGEDGERHRPVMLHRVILGSIERFIGVLIEHFAGALPVWLAPVQARLLNVT------DA 548

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  EK  A L+  G  V  D   E++G +   A +   P  ++VG K V    V I+ 
Sbjct: 549 QGEFTEKARAYLAGRGIRVEADTRNEKLGYKVREAQVEKIPYMLVVGDKEVEAGCVNIRS 608

Query: 421 RLTGIREDMSLEEVINYASH 440
           R       ++LEE       
Sbjct: 609 RDGDDPGLVTLEEAAQLILD 628


>gi|115475758|ref|NP_001061475.1| Os08g0295300 [Oryza sativa Japonica Group]
 gi|38175524|dbj|BAD01219.1| putative threonyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|38175707|dbj|BAD01414.1| putative threonyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|113623444|dbj|BAF23389.1| Os08g0295300 [Oryza sativa Japonica Group]
 gi|215687347|dbj|BAG91912.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 745

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 159/446 (35%), Gaps = 38/446 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  +Y   + +   RD  +      L     HQ S G   +LP G    + +   +R++ 
Sbjct: 337 RLKEYKHLLEEAKKRDHRLLGQTQDLF--FFHQLSPGSCFFLPHGAIIYNKLMDFLRQQY 394

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + +  LW  SG   +Y + M  + +   +     P +      +F   
Sbjct: 395 RDRGYQEVLSPNIYNMQLWETSGHAANYKENMF-VFEIEKQEFGLKPMNCPGHCLMFEHR 453

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP       +  R+EL     G+ R R F   DA+ F       K     +   
Sbjct: 454 VRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCR-ESQIKDEVKAVLDF 512

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G K   +   + P       E                   +          +
Sbjct: 513 INYVYEIFGFKYE-LELSTRPEKYLGDIE-----------------TWNKAEQQLTEALN 554

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +      I E   A Y    D+    +FD+L    + +   ++    F    ++ L  SA
Sbjct: 555 EFGKPWQINEGDGAFYGPKIDIG---VFDALKRKFQCATLQLD----FQLPLRFKLTYSA 607

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                   +  V +    +G++  + A++    +     WP  ++P +  + +I ++   
Sbjct: 608 E--DEAKLERPVMIHRAILGSVERMFAILL---EHYNGKWPLWLSPRQAIVCSISSNS-- 660

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +++ AR+ + G  V  D+    I  +   A L  F   ++VG++     +V ++ 
Sbjct: 661 -VEYAKQVRARIHEAGFHVAIDETDRTIQKKVREAQLAQFNYILVVGAQEAETGQVSVRV 719

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R       +S++++I       +  +
Sbjct: 720 RDKAELATVSIDDIITRFKEEVAAYK 745


>gi|307262323|ref|ZP_07543971.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306867986|gb|EFM99814.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 571

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 122/243 (50%), Positives = 158/243 (65%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E  +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAV 239

Query: 241 DII 243
            + 
Sbjct: 240 AVG 242



 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 111/207 (53%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     ++  +        +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNVNWERDVAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
            AT +G DGK   + MG YGIG  RVVAA IE  HD +  I   D +APF ++++ +   
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFSEELYRTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++ +      
Sbjct: 544 EYKNRRTGEKQMIAKDQLLAFLKENVK 570


>gi|33598297|ref|NP_885940.1| prolyl-tRNA synthetase [Bordetella parapertussis 12822]
 gi|81836505|sp|Q7W481|SYP_BORPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33566855|emb|CAE39070.1| prolyl-tRNA synthetase [Bordetella parapertussis]
          Length = 576

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 122/233 (52%), Positives = 162/233 (69%), Gaps = 1/233 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P +AEIASH+LM R GMI + + GIY+++PLG K +  +  I+REE
Sbjct: 1   MRASKYHLNTLKEAPAEAEIASHQLMTRAGMIRKLAGGIYTYMPLGLKVIRKIEGIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+ +P +Q A+LW+ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNAAGAIELLMPVVQPAELWMESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G++ SY+ M+ +
Sbjct: 121 EIQSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGAQRSYDIMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y RIF RL L+   + A++G IGG  SHEF V+ADTGE  +  +    D+   
Sbjct: 181 YQRIFQRLSLEFRAVAADTGSIGGSRSHEFQVIADTGEDLIVYN-PESDYAAN 232



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 66/188 (35%), Positives = 102/188 (54%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGH+F+ GTKYS  + ATF   +GK   +QMG 
Sbjct: 387 VADLRNVVEGDPSPDGKGALSIQRGIEVGHVFFLGTKYSEALKATFLDDNGKPAVLQMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE +HD +GIIWP ++AP+++ +  +     +  RD    +Y  L   
Sbjct: 447 YGIGVTRIVGAAIEQNHDARGIIWPRAIAPYEVVICPVGWGKSETVRDTALALYEALRAR 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD   + G  FA  +L+G PL+V VG + +++  VE++ R       + +++ +
Sbjct: 507 GVDVMLDDRDSRPGVMFAEWELIGVPLRVTVGERGLNEGVVELQARREAEAAKVPVDQAL 566

Query: 436 NYASHRFS 443
                +  
Sbjct: 567 AQTLAKLD 574


>gi|329577159|gb|EGG58629.1| threonine--tRNA ligase [Enterococcus faecalis TX1467]
          Length = 412

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 157/439 (35%), Gaps = 33/439 (7%)

Query: 10  ILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
             +   RD      +L L   M+  +   G+  WLP G      +   I +++   G   
Sbjct: 2   REEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISLGYQH 59

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRN 127
           +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I SYR 
Sbjct: 60  VYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIHSYRE 119

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP    ++ +  R E       ++    +  +     + P+  K  + +     + ++  
Sbjct: 120 LPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVAVYAD 179

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISLN 246
             +     R                  D   T  +   D M     +      D++    
Sbjct: 180 FNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDELELDY 225

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV   ++  +L   + +S   ++    F    ++      T+ G D
Sbjct: 226 FEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTYVGED 274

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   +   
Sbjct: 275 GENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHSEYAY 331

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +I  RL   G  V  DD  E++G +   +     P Q++VG K + D+ V ++   +   
Sbjct: 332 EIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVGDKEMEDATVNVRRYGSKET 391

Query: 427 EDMSLEEVINYASHRFSNN 445
               L   I+  +    N 
Sbjct: 392 SVEDLSIFIDSMAAEVHNY 410


>gi|325283002|ref|YP_004255543.1| threonyl-tRNA synthetase [Deinococcus proteolyticus MRP]
 gi|324314811|gb|ADY25926.1| threonyl-tRNA synthetase [Deinococcus proteolyticus MRP]
          Length = 650

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/446 (16%), Positives = 152/446 (34%), Gaps = 38/446 (8%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E  R D      +L L          G+  WLP G      +   I + + + G
Sbjct: 237 YLHLLEEAKRRDHRRLGKELDLF-FTSDVIGPGLPIWLPSGATIRRELERFIVDVELKNG 295

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L  ++L+  SG +D Y ++M  +   + + ++  P +      I+     SY
Sbjct: 296 YQHVYSPALAKSELYKISGHWDHYQEDMFPIMHLDQEELVLRPMNCPHHIQIYAHKPHSY 355

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    ++   +R E   +  G+ R R   + DA+ F    +  +  +  +      +
Sbjct: 356 RELPLKIAELGTMYRYEQSGQLTGLSRVRSMTLNDAHIFCRPDQIQEE-FKAVVRMIQEV 414

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS-KDFMDFPIPSENTDFDDII 243
           +  LG K    R                  D  +T+ +       D           D+ 
Sbjct: 415 YEVLGFKDYSYRLSLR--------------DPQDTEKYYQDDQMWDTAEAQLREALSDLG 460

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y    DV   ++  +L +++ +S   ++    F    K+ L   A   
Sbjct: 461 VDYYESPGDAAFYGPKLDV---QVRSALGKDETISTAQLD----FLLPQKFDLEYVAE-- 511

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               +   +          R+ A +IE++                               
Sbjct: 512 DGSRQRPVMIHRGVISTMERMTAFLIENTAGNFPFWLAPRQVMIIPIA-------DRHNA 564

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-- 421
             E++ A L   G     D   +++ ++   A+L   P+ +IVG K      V ++ R  
Sbjct: 565 YAEELRAELVAAGLRAEVDTSSDRMNAKVRDAELKKIPVMLIVGDKEQEARAVSVRERTP 624

Query: 422 -LTGIREDMSLEEVINYASHRFSNNR 446
                R+ ++  ++ +    R+ + +
Sbjct: 625 EGHQERKGVAFSDLKSELVTRYQSRQ 650


>gi|297539468|ref|YP_003675237.1| prolyl-tRNA synthetase [Methylotenera sp. 301]
 gi|297258815|gb|ADI30660.1| prolyl-tRNA synthetase [Methylotenera sp. 301]
          Length = 573

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 115/235 (48%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F    +E P DAE+ SH LM+R G+I +   G+YSW+PLG + L  V  I+R+E
Sbjct: 1   MRASQFFFNTQKEAPNDAELPSHILMVRAGLIKRLGSGLYSWMPLGLRVLRKVETIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA+E+ +P +Q  +LW E+GR+  +G +ML++ DR+ +   +GPTHEEV+TDI RS
Sbjct: 61  MNKAGALELLMPAVQPRELWDETGRWAVFGPQMLKITDRHSREFCFGPTHEEVITDIARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EVRSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFMMKDAYSFHTDFASLETTYANMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  +F+RLGLK   ++A++G IGGD SHEF VLAD+GE  +       D+    E
Sbjct: 181 YSNVFNRLGLKFRAVKADTGAIGGDGSHEFHVLADSGEDGLAYCDT-SDYAANVE 234



 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/185 (37%), Positives = 105/185 (56%), Gaps = 3/185 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D+ P+ K +    RGIEVGHIF   TKYS  M+AT+     +   ++MG 
Sbjct: 386 VADIRNVVEGDASPDGKGILSLCRGIEVGHIFQLRTKYSEAMNATYLDEASQTQVMEMGC 445

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE  +D +GII+P S+APF +++  I     +    A  KIYA L+  
Sbjct: 446 YGIGVSRIVGAAIEQGNDARGIIFPKSMAPFTVTICPIGYDKSEAVSAAANKIYADLNAA 505

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +   DD GE+ G  FA ADL+G P ++++G + ++D  VE K R     + ++L+ V+
Sbjct: 506 GIEALLDDRGERPGVMFAEADLMGIPHRLVIGERGLADGTVEYKGRTDAEAQMVALKNVV 565

Query: 436 NYASH 440
            +   
Sbjct: 566 EFMQK 570


>gi|157825427|ref|YP_001493147.1| threonyl-tRNA synthetase [Rickettsia akari str. Hartford]
 gi|166225491|sp|A8GML4|SYT_RICAH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157799385|gb|ABV74639.1| threonyl-tRNA synthetase [Rickettsia akari str. Hartford]
          Length = 635

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 151/439 (34%), Gaps = 40/439 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
            Y L + +   RD      +L L      + ++G+  W   G    + +   IR++  + 
Sbjct: 230 NYLLMLEEAEKRDHRKLGKELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKN 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P L    LW  SG ++ +  +M    D +DK +   P +      IF+  IKS
Sbjct: 288 GYTEVKTPVLVDKSLWEASGHWEKFRDDMF-ALDTDDKTLALKPMNCPCHVQIFKQGIKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +  L  R+E      G+MR R  +  DA+ F    + +  + +        
Sbjct: 347 YRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCTEEQITDETVSF-CKLLTE 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G  +I ++    P                      S    D    +     +   
Sbjct: 406 VYKDFGFTNISVKFSDRPEVR-----------------AGSNGTWDKAENALKEAVEKAG 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              ++     A Y    +     L D++    +     ++    F    +    + A++ 
Sbjct: 449 FTYTLNPGEGAFYGPKLEF---VLTDAIGRQWQCGTLQMD----FVLPER----LDASYI 497

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            A G+      +    +G++     ++   + G   +W           + I        
Sbjct: 498 AASGEKKRPVMLHRAILGSLERFIGILIEEYAGCFPLW------LAPIQVAIATITSDLN 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++   L   G     +   ++I  +         P+  ++G +   + +V I+   
Sbjct: 552 DYALEVQKALIDNGVRTDINISPDKINYKIREFYNQKIPMIAVIGKQEQENKQVTIRRLR 611

Query: 423 TGIREDMSLEEVINYASHR 441
           T  +E +SLE++I      
Sbjct: 612 TTEQEVLSLEQLITLIKEE 630


>gi|212704422|ref|ZP_03312550.1| hypothetical protein DESPIG_02477 [Desulfovibrio piger ATCC 29098]
 gi|212672143|gb|EEB32626.1| hypothetical protein DESPIG_02477 [Desulfovibrio piger ATCC 29098]
          Length = 648

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/442 (19%), Positives = 143/442 (32%), Gaps = 43/442 (9%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +    +L  L+E  R D      +L   T      + G+  WLP G      +    R E
Sbjct: 229 KALNAYLKQLEEAKRRDHRKLGRELGFFTFH-EDVAPGMVFWLPKGMMMRTILEDFWRRE 287

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +     +  P L   + W  SG YD Y + M       D      P +      I+R+
Sbjct: 288 HIKRNYDLVQGPQLLRVETWQRSGHYDHYRQNM-YFTQIEDDQYGIKPMNCISHMLIYRN 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR+LP  ++++ +  R E      G++R R+F   DA+      +        +  
Sbjct: 347 DLRSYRDLPQRYFELGVVHRHEKSGTLHGLLRVRQFTQDDAHILCTPEQLEGE-ILGVIH 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               + H  G                      V   T       + +  +    +     
Sbjct: 406 LIRDLMHLFGFDYK------------------VGISTRPKDSIGTDEAWELATNALIEAV 447

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   I E   A Y    DV    L D +    + S   ++    F    ++     
Sbjct: 448 KKADMPYEINEGDGAFYGPKIDVR---LLDCIGREWQCSTIQVD----FTLPERFD---- 496

Query: 300 ATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+ G DG+ H   M    I     R +  +IE              A     L    AH
Sbjct: 497 LTYVGQDGERHRPVMVHRAIMGSLERFIGVLIEQYAGAMPTWLAPEQARI---LTVTDAH 553

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           ++    ACE+    L  +G  V  D   E++G +   A L   P  ++VG K      V 
Sbjct: 554 NEAALKACEE----LKALGIRVTADTRNEKLGFKVREAQLAKVPYILVVGEKEAQAGGVN 609

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
           ++ R        S+ EV     
Sbjct: 610 VRLRNGDNLGLKSVAEVAALIR 631


>gi|189499158|ref|YP_001958628.1| threonyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
 gi|238692225|sp|B3EKG9|SYT_CHLPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189494599|gb|ACE03147.1| threonyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
          Length = 659

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 151/449 (33%), Gaps = 37/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD      +L L   +      G+  WLP G      + A ++EEQ 
Sbjct: 241 LKQHLARLEEAKKRDHRKLGAELELFM-LSQDVGSGLPIWLPKGAIIRSELEAFLKEEQR 299

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEML---RLADRNDKA--MIYGPTHEEVMTDI 117
           + G + +  P + + DL+  SG Y  Y           D   +    +  P +      I
Sbjct: 300 KRGYVPVYTPHIGNIDLYKRSGHYPYYSDSQFPPLTYKDDLGREEQYLLKPMNCPHHHLI 359

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           + S ++SYR+LP    +    +R E      G++R+R F   D++ +    +        
Sbjct: 360 YSSQLRSYRDLPIRMAEFGTVYRHEQSGELNGLIRARGFTQDDSHIYCRPDQLVDEICA- 418

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                  +F  LG   I +R                       +   +++          
Sbjct: 419 AIDLTKFVFTTLGFDDIEVRLSLHDPENQG-------------KYGGTEEVWKQAEKDVR 465

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              D +     I     + Y    D     + D+L    ++    ++             
Sbjct: 466 EAADRMEINYVIGIGEASFYGPKIDFI---VRDALGRKWQLGTVQVDYVMP--------E 514

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               ++ G+DGK H   +              I    +     +P  +AP +++++ I  
Sbjct: 515 RFDLSYIGSDGKPHRPVIIHRAPFGSMER--FIGVLIEHTAGNFPLWLAPVQVAVLPIT- 571

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +      E+++  L   G     D   E+IG +   A++   P  VI+G K     ++
Sbjct: 572 --EEVHAYAERVHQMLIDNGIRADLDIRSEKIGKKIREAEVGKIPYMVIIGQKEADSEEI 629

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++    G +  ++L+ + +       N 
Sbjct: 630 SLRRHRKGDQGSLTLQALKDMLVKEVRNK 658


>gi|148827919|ref|YP_001292672.1| prolyl-tRNA synthetase [Haemophilus influenzae PittGG]
 gi|166980128|sp|A5UHN3|SYP_HAEIG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148719161|gb|ABR00289.1| prolyl-tRNA synthetase [Haemophilus influenzae PittGG]
          Length = 572

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 125/243 (51%), Positives = 161/243 (66%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E  +  
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAI 239

Query: 241 DII 243
            I 
Sbjct: 240 AIG 242



 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 4/188 (2%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K      RGIEVGHIF  G KYS  M AT +G DGK   + MG YG
Sbjct: 384 DLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVG 376
           IG  RVVA+ IE  HD +  I   D +APF ++++ +     +  +   E++Y  L   G
Sbjct: 444 IGVTRVVASAIEQHHDERGIIWPSDEIAPFTVAIVPMNMHKSEAVQKYAEELYRTLQSQG 503

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV +DD  E+ G  FA  +L+G P  V++G K + + ++E K+R TG +E +S +++++
Sbjct: 504 VDVIFDDRKERPGVMFADMELIGIPHMVVIGEKNLDNGEIEYKNRRTGEKEMISKDKLLS 563

Query: 437 YASHRFSN 444
             + +  N
Sbjct: 564 VLNEKLGN 571


>gi|307251435|ref|ZP_07533349.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306856519|gb|EFM88661.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 571

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 122/243 (50%), Positives = 158/243 (65%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E  +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAV 239

Query: 241 DII 243
            + 
Sbjct: 240 AVG 242



 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 111/207 (53%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     ++  +  A     +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNVNWERDAAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
            AT +G DGK   + MG YGIG  RVVAA IE  HD +  I   D +APF ++++ +   
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L     DV +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFSEELYRTLKAQDVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++ +      
Sbjct: 544 EYKNRRTGEKQMIAKDQLLAFLKENVK 570


>gi|146297790|ref|YP_001192381.1| threonyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
 gi|189083608|sp|A5FP01|SYT_FLAJO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146152208|gb|ABQ03062.1| threonyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
          Length = 648

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 153/439 (34%), Gaps = 40/439 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L      +  +G+  WLP G    D +   ++  Q + G  ++  P
Sbjct: 236 AKRRDHRKLGKELELFA-FSQKVGQGLPLWLPKGAALRDRLEQFLKRAQKKAGYEQVVSP 294

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG Y  YG +  +        +  +  P +     +I+     SY++LP 
Sbjct: 295 HIGQKELYVTSGHYAKYGADSFQPIHTPAEGEEFLLKPMNCPHHCEIYNVRPWSYKDLPK 354

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + +    +R E      G+ R R F   DA+ F  TPE     + K+    L +F  LG
Sbjct: 355 RYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPEQLDEEFKKVIDLVLYVFGSLG 413

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            ++   +                  D  + + +   D       +   +      LN++V
Sbjct: 414 FENFTAQISLR--------------DQEDREKYIGTDENWEKAENAIINAAKDKGLNTVV 459

Query: 250 E-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           E    A Y    D     + D+L    ++    ++                 T+KGAD +
Sbjct: 460 EYGEAAFYGPKLDFM---VKDALGRQWQLGTIQVDYNLP--------ERFELTYKGADNE 508

Query: 309 DHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            H    +     G+M    A++     G   +W        +SL       +   +  +K
Sbjct: 509 LHRPVMIHRAPFGSMERFIAILLEHTAGNFPLWLMPEQAIILSL------SEKYENYAKK 562

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L         D+  E IG +   A++   P  +IVG +   +  + I+      + 
Sbjct: 563 VLDLLENHEIRALIDNRNETIGKKIRDAEMQKIPFMLIVGEEEEKNGTISIRRHGQEGKG 622

Query: 428 --DMSLEEVINYASHRFSN 444
              +S+EE  +        
Sbjct: 623 NITVSIEEFASIVDEEIKK 641


>gi|262368848|ref|ZP_06062177.1| prolyl-tRNA synthetase [Acinetobacter johnsonii SH046]
 gi|262316526|gb|EEY97564.1| prolyl-tRNA synthetase [Acinetobacter johnsonii SH046]
          Length = 572

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 120/235 (51%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DAE+ SH+LMLR GMI + + G+Y+WLP+G + L+ V AI+ EE
Sbjct: 1   MRASRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGVRVLNKVAAIVHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G++E+ +P  Q A LW ESGRY  YG E+LR  DR+    + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGSLEVLMPVTQPASLWEESGRYVQYGPELLRFKDRHGNPFVLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQ+Q KFRDE+RPRFGVMRSREF+MKDAYSF    E  + +Y+ M+ +
Sbjct: 121 ELKSYKQLPANFYQVQTKFRDEIRPRFGVMRSREFIMKDAYSFHSNQESLQETYDIMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF RLGL   P++A++G IGG  SHEF VLA +GE  +       D+    E
Sbjct: 181 YCKIFTRLGLDFRPVQADTGSIGGSGSHEFHVLASSGEDDIAF-STESDYAANVE 234



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/217 (34%), Positives = 108/217 (49%), Gaps = 7/217 (3%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEV 284
             DF   +   D            Q+T  Y    D+ N    D  P+ K      RGIEV
Sbjct: 360 LSDFVAGANEIDKHVTGLNWERDAQFTEVY----DLRNVVEGDPSPDGKGTLQIKRGIEV 415

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  G KYS  +     G DGK   V MG YGIG  RVVA+ IE + D KGIIWP ++
Sbjct: 416 GHIFQLGQKYSEALGCKVLGEDGKPFTVTMGCYGIGVTRVVASAIEQNFDEKGIIWPAAI 475

Query: 345 APFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           APF+++++ + A       +A E +YA L+  G DV  DD  E+ G +F+  +L G P +
Sbjct: 476 APFEVAIVPMNAHKSPRSLEAAEALYAELTTAGYDVLLDDRNERPGVKFSDLELTGIPHR 535

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +++G K +     E K R      ++S +E++   + 
Sbjct: 536 IVIGEKGLDAGTFEYKGRRDAESVNISKDELLAKIAK 572


>gi|238898885|ref|YP_002924567.1| threonine tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259516538|sp|C4K776|SYT_HAMD5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229466645|gb|ACQ68419.1| threonine tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 638

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 152/442 (34%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD         L      + + G+  W   G      +  +IRE+     
Sbjct: 232 YLNRLEEATKRDHRKIGKTQDLY--HFQEEAPGMVFWHENGWIVFRELEILIREKLKEYE 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +     +IF+  +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYSENMFT-TLSENREYCIKPMNCPGHLEIFKQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +  K   +        I
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEKQVRKE-VSNCIKMTYDI 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E    A+                     +   +   
Sbjct: 408 YQTFGFKKIAVKLSTRPEKRIGSDEIWTQAE-----------------EDLASVLKEQGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L+D L    +     ++    F    +    ++A +  
Sbjct: 451 TFELQPGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPVR----LNAFYID 499

Query: 305 ADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +    V +    +G++     ++    +     +P  +AP ++ LINI    +   D
Sbjct: 500 ENSERQVPVMIHRAILGSIERFIGILT---EEYAGFFPVWLAPVQVMLINIT---EKQSD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L ++G     D   E+IG +     L   P  ++ G K V  +++ ++    
Sbjct: 554 YVKKVAKNLQQLGVRAKVDLRNEKIGFKIRQHTLYRIPYILVCGDKEVESNQIAVRTHSG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                 S+    +      S+ 
Sbjct: 614 KDLGSFSVNVFADKLLEEISSR 635


>gi|302871195|ref|YP_003839831.1| prolyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574054|gb|ADL41845.1| prolyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
          Length = 572

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 122/265 (46%), Positives = 162/265 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRSGAQEVHMSALMPKELWEESGRWAIFGPEMFRIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR+LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  +G   SY KM+ +
Sbjct: 121 EISSYRDLPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDIDEKGLDISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++   K         +    D
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYCKACGYAANLEKAECLD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
             +  N  +++    Y        E
Sbjct: 241 IPVETNEDLKEKQEVYTPNVRTIEE 265



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/194 (35%), Positives = 102/194 (52%), Gaps = 4/194 (2%)

Query: 256 YAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
               +D+ N    D  P+    K    RGIEVGHIF  GTKY+      +    G+  ++
Sbjct: 375 VTRFADLRNITQDDLCPKCRSQKVTIERGIEVGHIFKLGTKYTEAFGCVYTDEKGEKKFM 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R  AA+IE  HD  GIIWP +VAP+++ ++ +   D+       +IY  L
Sbjct: 435 IMGCYGIGINRTAAAIIEQMHDEDGIIWPITVAPYEVIVVPVNVKDENQSKIAFEIYENL 494

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K G +V  DD  E+ G +F  ADL+G P +V VG K VS+ K+EI++R T    +  ++
Sbjct: 495 QKNGVEVLIDDRDERAGVKFKDADLIGIPFRVTVGKK-VSEGKIEIRNRRTKESFEFEID 553

Query: 433 EVINYASHRFSNNR 446
             + +  +     +
Sbjct: 554 NAVEFIINLIKQEK 567


>gi|224823461|ref|ZP_03696570.1| prolyl-tRNA synthetase [Lutiella nitroferrum 2002]
 gi|224603916|gb|EEG10090.1| prolyl-tRNA synthetase [Lutiella nitroferrum 2002]
          Length = 571

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 125/235 (53%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F+  L+E P DA+I S KLMLR G I + + GIYSW+P+G K+L  V AI+REE
Sbjct: 1   MRASQFFISTLKEAPADADIVSQKLMLRAGFIRKAAAGIYSWMPMGLKSLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A LW E+GR+D+ G+EMLR  DR+++  +  PT EEV+TD+ R 
Sbjct: 61  MNRAGAIEVIMPIVQPAGLWQETGRWDTMGEEMLRFKDRHERDFVIQPTSEEVVTDLIRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQIQ KFRDE RPRFGVMR REF MKDAYSFD + + +  SY+ M+ +
Sbjct: 121 DLKSYRALPKNFYQIQTKFRDERRPRFGVMRGREFTMKDAYSFDRSADAAGVSYDNMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    + A++G IGGD SHEF V+A TGE  +    D  D+    E
Sbjct: 181 YCKIFDRIGLTYRAVAADTGAIGGDRSHEFQVIAATGEDAIIYCPD-SDYAANIE 234



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/197 (38%), Positives = 110/197 (55%), Gaps = 3/197 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
               P    +D+ N    D  P+ K V    RGIEVGH+FY GTKYS  M+ATF   DGK
Sbjct: 375 GRDCPEPIVADIRNVVAGDPSPDGKGVLAIERGIEVGHVFYLGTKYSQAMNATFLDEDGK 434

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
             + +MG YGIG  R++ A IE + D KGIIWPD++APF + L  +        + A ++
Sbjct: 435 PKFFEMGCYGIGVTRILGAAIEQNFDAKGIIWPDAIAPFTVVLCPVGYDRSAEVKAAADQ 494

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA L   G DV  DD GE+ G+ FA  +L+G P +V +G + + + KVE +HR      
Sbjct: 495 LYAELVANGVDVILDDRGERPGAMFADWELIGVPHRVTIGDRGLKEGKVEYQHRRDSEAT 554

Query: 428 DMSLEEVINYASHRFSN 444
            M+++ ++ +   +   
Sbjct: 555 GMAVDAILEHVLVKLGK 571


>gi|299529723|ref|ZP_07043160.1| prolyl-tRNA synthetase [Comamonas testosteroni S44]
 gi|298722586|gb|EFI63506.1| prolyl-tRNA synthetase [Comamonas testosteroni S44]
          Length = 580

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 160/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++ +  L+E P DAE+ SHKLM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFLISTLKEAPADAEVVSHKLMMRAGMIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE ++P +Q A+LW E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAIETTMPVVQPAELWQETGRFEKMGPELLRIQDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + ++ SY  M  +
Sbjct: 121 EFKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDKDRDAAQISYQTMREA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL+   +RA+SG IGGDLS EF V+A TGE  +    +  D+    E  
Sbjct: 181 YKRIFDRFGLQYRAVRADSGAIGGDLSEEFQVIASTGEDAIVYCPN-SDYAANIEKA 236



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 69/189 (36%), Positives = 106/189 (56%), Gaps = 3/189 (1%)

Query: 257 AATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+ N    D  P+   +    RGIE+GH+FY GTKYS  M ATF G +GK  + +M
Sbjct: 390 AVVADLRNVVAGDRSPDGAGELAIERGIEIGHVFYLGTKYSKAMEATFLGDNGKPQHFEM 449

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLS 373
           G YGIG  R+ AA +E +HD +G+IWPD++APF + +  I     +  +   EK+Y  L 
Sbjct: 450 GCYGIGVTRLPAAAVEQNHDERGMIWPDAIAPFTVVICPIGMGRSEAVKTEAEKLYGELL 509

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G DV  DD  E+ G+  A  +L+G P +V++G + + +  VE + R       ++  E
Sbjct: 510 ALGVDVILDDRDERPGAMLADWELIGVPHRVVLGDRGLKEGVVEYQQRRDTEATKLATNE 569

Query: 434 VINYASHRF 442
           V+ +   R 
Sbjct: 570 VLAHLKSRL 578


>gi|114566427|ref|YP_753581.1| prolyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318501|sp|Q0AYJ4|SYP_SYNWW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114337362|gb|ABI68210.1| prolyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 570

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 117/280 (41%), Positives = 179/280 (63%), Gaps = 4/280 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F P L+E P +AE+ SH+L+LR G I + + G+YS+LPL  + L  +  I+REE
Sbjct: 1   MKASELFFPTLREVPSEAEVLSHQLLLRAGFIRKATAGVYSYLPLANRVLKKIMNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q A+LW +SGR++ YG EM RL DR+++    GPTHEE++T +  +
Sbjct: 61  MDRAGGQEVILPIIQPAELWKKSGRWEVYGDEMFRLKDRHNRDFALGPTHEEIITTLVDA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQIQ K+RDE+RPRFG+MR REF+MKD YSFD+  EG   SY+KM+ +
Sbjct: 121 DVHSYRHLPLLLYQIQNKYRDEIRPRFGLMRGREFIMKDLYSFDIDEEGLDISYHKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y RIF RL L+   + A+SG IGG+ SHEF+VLA+ GE ++   K+  D+   +E     
Sbjct: 181 YNRIFQRLKLQYRVVEADSGAIGGNESHEFMVLAENGEAEIVYCKNC-DYGANTEKAVCS 239

Query: 240 --DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             +  ++    +E           + +   + ++P+ K++
Sbjct: 240 LEEPKVTEEEQLELEKVHTPGQRTIQDLVDYMNIPKEKQI 279



 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/185 (34%), Positives = 99/185 (53%), Gaps = 2/185 (1%)

Query: 257 AATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+ N    DS P       S RGIEVGHIF  GTKYS  + A +    G++  + M
Sbjct: 378 AGINDIRNAVAGDSCPVCSAPLYSMRGIEVGHIFKLGTKYSEVLEANYLDQKGQEKPMVM 437

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R +AA +E S D  GI+WP  + PF++ ++ + + ++    A   +Y    +
Sbjct: 438 GCYGIGISRTMAAAVEQSADENGIVWPLPITPFEVIIVPVNSKNEEQMQAAWSLYEEFKQ 497

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +   DD  E+ G +F  ADL+G PL++ +G + + + +VE+K R     E + L+ V
Sbjct: 498 EGLETIVDDRDERAGVKFKDADLIGIPLRITIGPRSLQEKQVEVKKRSDKDIELVPLDAV 557

Query: 435 INYAS 439
            +   
Sbjct: 558 SSRVK 562


>gi|254468329|ref|ZP_05081735.1| prolyl-tRNA synthetase [beta proteobacterium KB13]
 gi|207087139|gb|EDZ64422.1| prolyl-tRNA synthetase [beta proteobacterium KB13]
          Length = 561

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 122/293 (41%), Positives = 177/293 (60%), Gaps = 6/293 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P+DAE+ SH+LM+R G + + S G+Y+W+P+G + L  + +IIREE
Sbjct: 1   MKTSQFFISTLKEAPQDAELKSHQLMVRAGYVKRLSSGLYTWMPIGLRVLRKIESIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GA+E+ +P +Q A+LW E+GR+  +G +ML++ DR+     +GPTHEEV+TDI R 
Sbjct: 61  MNASGAVELLMPAIQPAELWQETGRWQQFGPQMLKINDRHQNEFCFGPTHEEVITDIARK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF       +  Y  MF +
Sbjct: 121 ELNSYKQLPINFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHANENCLQKMYELMFET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL+   + A+SG IGGD SHEF VLAD+GE  +  S          + +   
Sbjct: 181 YNRIFSRIGLQFRSVAADSGAIGGDASHEFHVLADSGEDVIAYSDQSEYAANIEKASTVF 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
              S  + V                   ++L E  ++  + I    +F    +
Sbjct: 241 KKASKENKVP------TEKVHTPEITTIEALQEFFKIDTKSILKAVVFNHDDE 287



 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/214 (34%), Positives = 109/214 (50%), Gaps = 3/214 (1%)

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--NKRVSARGIEVGHIFY 289
           I  EN                +       D+ N    D  P+   K    RGIEVGHIF 
Sbjct: 348 IEMENMVCGANEEHYHFTNFQSINTEKFVDITNVVEGDVSPDESGKLKFCRGIEVGHIFQ 407

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            G KYS  M A+    +GK   + MG YGIG  R+VAA IE ++D  G+I P S+APF++
Sbjct: 408 LGKKYSESMQASILNEEGKSQTMTMGCYGIGVSRIVAAAIEQNNDENGMILPKSIAPFEL 467

Query: 350 SLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            ++ I    +   R    KIYA L K G DV  DD   + G  FA +DL+G P ++++G 
Sbjct: 468 IIVPIGYHKNDKVRAQANKIYADLLKSGIDVILDDRVARPGIMFAESDLIGIPNRLVIGE 527

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           K ++++KVE K R     E +++ ++I++   + 
Sbjct: 528 KSLNENKVEFKSRSESNSEMINISDLIHFIKSKI 561


>gi|90417791|ref|ZP_01225703.1| threonyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337463|gb|EAS51114.1| threonyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
          Length = 659

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/426 (17%), Positives = 147/426 (34%), Gaps = 34/426 (7%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      ++ L      + + G   W P G +    + + +R  Q   G
Sbjct: 236 YLHMLEEAEKRDHRRLGREMDLF--HFQEDAPGTVFWHPKGWRLYQTLVSYVRRRQEAEG 293

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E++ P L    LW  SG ++ Y ++M      +++     P +      IF+  +KSY
Sbjct: 294 YQEVNAPQLLERSLWETSGHWEKYHEDMFVTETEDERVFALKPMNCPGHVQIFKHGLKSY 353

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G+MR R F   DA+ F    + +  S        L I
Sbjct: 354 RDLPLKIAEFGAVHRYEPSGALHGLMRVRAFTQDDAHVFCTEEQITAESLKIN-DLILSI 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + + ++  + P     S E    A+     V      ++       T       
Sbjct: 413 YRDFGFEDVLVKLSTRPEKRVGSDELWDKAEASMRDVLA---IIEEQGKGHITTA----- 464

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    +     L D++    +V    ++      FG        A +  
Sbjct: 465 ---VAEGDGAFYGPKYEY---TLRDAIGRQWQVGTNQVDFNLPGRFG--------AFYID 510

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +      +    +G++     ++  +  G   +W   +     ++           D
Sbjct: 511 RDSEKKTPVMLHRAMLGSVERFIGILIENCAGHLPLWLSPLQVVVATIT------SEADD 564

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G  V  D   E+I  +     +   P+ ++ G +   +  V I+    
Sbjct: 565 YALQVAEELRQAGLQVETDLRNEKINYKVREHSMAKVPVIMVCGKREAEERTVNIRRLGA 624

Query: 424 GIREDM 429
             +  M
Sbjct: 625 REQTPM 630


>gi|127513524|ref|YP_001094721.1| prolyl-tRNA synthetase [Shewanella loihica PV-4]
 gi|166980157|sp|A3QG64|SYP_SHELP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|126638819|gb|ABO24462.1| prolyl-tRNA synthetase [Shewanella loihica PV-4]
          Length = 569

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 124/240 (51%), Positives = 163/240 (67%), Gaps = 1/240 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L   +E P +AE+ SH+LMLR GMI +++ G+YSWLP G + L  V AI+REE
Sbjct: 1   MRVSKYLLSTQKETPANAEVVSHQLMLRAGMIRRNASGLYSWLPSGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q ADLWVE+GR+D +G E+LR  DR+++  + GPTHEEV+TDI R 
Sbjct: 61  MNNAGAVEILMPMVQPADLWVETGRWDKFGPELLRFQDRHNRDFVLGPTHEEVITDIIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E    +Y  M+ +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHLDQETMDDTYQAMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  R+GL   P+ A++G IGG +SHEF VLA++GE  +       D+    E  +  
Sbjct: 181 YSNILGRMGLAFRPVLADTGSIGGSMSHEFHVLANSGEDLIAY-STESDYAANIEKAEAP 239



 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 109/189 (57%), Gaps = 3/189 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    +  P  K      RGIEVGHIF  GT YS  M A+    +GK   +
Sbjct: 379 PQAEVADLRNVIEGEPSPCGKGTIGLLRGIEVGHIFQLGTNYSKAMGASVLDENGKAQTL 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YG+G  R+VAA IE +HD +GIIWP ++APFK+ ++ +        +D  EK+Y+ 
Sbjct: 439 LMGCYGVGVSRIVAAAIEQNHDDRGIIWPAAIAPFKVGILPMNMHKSHRIKDMAEKLYSD 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LS  G +V +DD  E+ G  FA  +L+G P  +++G + + +   E K+R TG ++++  
Sbjct: 499 LSDAGIEVLFDDRKERPGVMFADMELIGLPHVIVIGERNIDNGVFEYKNRRTGEKQEIPF 558

Query: 432 EEVINYASH 440
           EE++++   
Sbjct: 559 EEIVDFIKS 567


>gi|317402479|gb|EFV83047.1| ProS protein [Achromobacter xylosoxidans C54]
          Length = 576

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 127/265 (47%), Positives = 174/265 (65%), Gaps = 5/265 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y +  L+E P +AE+ASH+LM R GMI + + GIY+++PLG K +  V AI+REE
Sbjct: 1   MRASNYHINTLKEAPSEAEVASHQLMTRAGMIRKLAGGIYTYMPLGLKIIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N +GAIE+ +P +Q A+LW+ESGR++ YG E+LR+ DR+ +  +  PT EEV+TDI R+
Sbjct: 61  MNASGAIELLMPVVQPAELWMESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  FY IQ KFRDE RPRFG+MR REF MKDAYSFD    G++ SY+ M+ +
Sbjct: 121 EIHSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSFDRDEAGAQKSYDNMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF RLGL+   + A++G IGG  SHEF V+ADTGE  +  + D  D+    E  +  
Sbjct: 181 YMRIFGRLGLEFRAVAADTGSIGGTRSHEFQVIADTGEDLLVYNAD-SDYAANIELAEAP 239

Query: 241 ----DIISLNSIVEQWTAPYAATSD 261
               +  +    +     P AA  +
Sbjct: 240 GLYAERGAPTQPMADVATPGAAKCE 264



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 100/189 (52%), Gaps = 3/189 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGH+FY G KYS  + ATF    GK   ++MG 
Sbjct: 387 VADLRNVVAGDPSPDGKGTLSIQRGIEVGHVFYLGKKYSEALKATFLDETGKPAVLEMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE +HD +GIIWP ++APF++ +  +     +  R+   K+Y  L   
Sbjct: 447 YGIGITRIVGAAIEQNHDDRGIIWPRAIAPFEVVICPVGWGKSETVRNTSLKLYESLLAR 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD   + G  FA  +L+G PL+V VG + ++D  VE++ R       + +E  +
Sbjct: 507 GVDVILDDRDARPGVMFAEWELIGAPLRVTVGERGLNDGVVELQARRETEAAKIPVESAL 566

Query: 436 NYASHRFSN 444
                +   
Sbjct: 567 ETVLTKLDT 575


>gi|189083494|sp|A9KGU5|SYP_COXBN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 564

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 130/237 (54%), Positives = 169/237 (71%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM+ + + G+Y+WLPLG + L  V  ++REE
Sbjct: 1   MKVSQFFLATVKETPADAVLASHQLMIRAGMLRKLASGLYTWLPLGLRVLQKVADVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 61  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 121 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S    D+    E  
Sbjct: 181 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSD-ESDYAANIEKA 236



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 82/203 (40%), Positives = 112/203 (55%), Gaps = 4/203 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
           DD   +N   E+   P  + +D+      D  P+ K     ARGIEVG +F  G KYS  
Sbjct: 363 DDFHWINVNWER-DVPLGSVADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRK 421

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+AT     GK  Y+QMG YGIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H
Sbjct: 422 MNATVVDELGKSRYLQMGCYGIGVSRTVAAAIEQNHDERGIIWPTPMAPFFIALVPVNMH 481

Query: 358 DQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                R+ACEK+Y  L   G +V WDD  E+ G  FA  DL+G P ++++    +    V
Sbjct: 482 KSYRVREACEKLYNELIDAGYEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIV 541

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
           E K R +   E++SLE V++   
Sbjct: 542 EYKARKSKEAENVSLENVLSVFR 564


>gi|227543651|ref|ZP_03973700.1| threonine--tRNA ligase [Lactobacillus reuteri CF48-3A]
 gi|300908708|ref|ZP_07126171.1| threonine--tRNA ligase [Lactobacillus reuteri SD2112]
 gi|227186362|gb|EEI66433.1| threonine--tRNA ligase [Lactobacillus reuteri CF48-3A]
 gi|300894115|gb|EFK87473.1| threonine--tRNA ligase [Lactobacillus reuteri SD2112]
          Length = 627

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 155/441 (35%), Gaps = 36/441 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD  +  ++L L    +  +   G+  WLP G      +   I + +   G  
Sbjct: 215 KRQEAKERDHRVIGNQLDLF--FVDPKVGAGLPYWLPKGATIRRTIERYIIDREVADGYQ 272

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + D +  SG ++ Y  +M    D  D  M    P +      +++ HI+SYR
Sbjct: 273 HVYTPVLMNLDAYKTSGHWEHYRDDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSYR 332

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++
Sbjct: 333 DLPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVTLDQIRSE-FAKILKLIMSVY 391

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +     R                       + + + +  +       +  DD+   
Sbjct: 392 EDFDITDYSFRLSLRD-------------PKNVKKYYANDEMWEKSQSMLKSAMDDLNLD 438

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    D+  +    +L  ++ +S   ++    F    ++      ++ G 
Sbjct: 439 YYEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLSYVGQ 487

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK+H    +    +G M    A +   + G    W             I  +++   + 
Sbjct: 488 DGKEHQPVMIHRGVVGTMERFMAYLTEIYKGAFPTWLAPEQVH-----IIPVNEEAHGEY 542

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  ++      V  D   E++G +   A     P  ++VG    +++ V ++     
Sbjct: 543 ADNLAKKMKAANIRVNVDHRNEKMGYKIREAQTQKVPYTLVVGDDEKNNNGVSVRKYGEK 602

Query: 425 IREDMSLEEVINYASHRFSNN 445
            + +MS E  +N      ++ 
Sbjct: 603 EQNEMSQEAFMNEILEDIASY 623


>gi|194467309|ref|ZP_03073296.1| threonyl-tRNA synthetase [Lactobacillus reuteri 100-23]
 gi|194454345|gb|EDX43242.1| threonyl-tRNA synthetase [Lactobacillus reuteri 100-23]
          Length = 601

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 155/441 (35%), Gaps = 36/441 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD  +  ++L L    +  +   G+  WLP G      +   I + +   G  
Sbjct: 189 KRQEAKERDHRVIGNQLDLF--FVDPKVGAGLPYWLPKGATIRRTIERYIIDREVADGYQ 246

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + D +  SG ++ Y  +M    D  D  M    P +      +++ HI+SYR
Sbjct: 247 HVYTPVLMNLDAYKTSGHWEHYRDDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSYR 306

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++
Sbjct: 307 DLPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVTLDQIRSE-FAKILKLIMSVY 365

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +     R                       + + + +  +       +  DD+   
Sbjct: 366 EDFDITDYSFRLSLRD-------------PKNVKKYYANDEMWEKSQSMLKSAMDDLNLD 412

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    D+  +    +L  ++ +S   ++    F    ++      ++ G 
Sbjct: 413 YYEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLSYVGQ 461

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK+H    +    +G M    A +   + G    W             I  +++   + 
Sbjct: 462 DGKEHQPVMIHRGVVGTMERFMAYLTEIYKGAFPTWLAPEQVH-----IIPVNEEAHGEY 516

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  ++      V  D   E++G +   A     P  ++VG    +++ V ++     
Sbjct: 517 ADNLAKKMKAANIRVNVDHRNEKMGYKIREAQTQKVPYTLVVGDDEKNNNGVSVRKYGEK 576

Query: 425 IREDMSLEEVINYASHRFSNN 445
            + +MS E  +N      ++ 
Sbjct: 577 EQNEMSQEAFMNEILEDIASY 597


>gi|326404590|ref|YP_004284672.1| threonyl-tRNA synthetase [Acidiphilium multivorum AIU301]
 gi|325051452|dbj|BAJ81790.1| threonyl-tRNA synthetase [Acidiphilium multivorum AIU301]
          Length = 640

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 147/437 (33%), Gaps = 39/437 (8%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E  R D      ++ L    + + + G   W   G +    V A +R  Q   G 
Sbjct: 233 LKQLEEAERRDHRKIGRQMDLF--HMQEEAVGSVFWHEKGWRLYRTVEAYMRRRQEEFGY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           IE+  P L    LW  SG +D+Y   M     +  DK +   P +      IF   ++SY
Sbjct: 291 IEVRTPQLLDRKLWEASGHWDNYRSHMFIAEVEDEDKVLAVKPMNCPCHVQIFNHGLRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R E      G+MR R F   DA+ F    + +  +  +      R+
Sbjct: 351 RELPLRMAEFGACHRYEPSGALHGIMRVRAFAQDDAHIFCTEDQIADETV-RFVEMLRRV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++    P     S E                   D    +  +  +    
Sbjct: 410 YADFGFPEFAVKFADRPTPRSGSDE-----------------VWDKAEAALRSACETAGV 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             ++     A Y    +     L D++  + +     ++    F    +           
Sbjct: 453 TFTVNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVD----FVLPERLDASY---VTA 502

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G+   V +    +G+      ++  +  G+  +W         S++          D 
Sbjct: 503 ESGRARPVMLHRAIVGSFERFIGILIENCAGRFPLWLAPTQAAVASIVT------DANDY 556

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E + A+L + G  V  D   E+I ++     L   P  ++VG +      V I+   + 
Sbjct: 557 AETVAAKLKEAGLAVATDTRNEKINAKVRDLSLALVPNILVVGRREAEQQTVSIRRLGSD 616

Query: 425 IREDMSLEEVINYASHR 441
            ++ M+L+E +      
Sbjct: 617 KQDSMTLDEAVATLKAE 633


>gi|294788637|ref|ZP_06753879.1| proline--tRNA ligase [Simonsiella muelleri ATCC 29453]
 gi|294483514|gb|EFG31199.1| proline--tRNA ligase [Simonsiella muelleri ATCC 29453]
          Length = 571

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 119/240 (49%), Positives = 159/240 (66%), Gaps = 2/240 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLMLR G+I  ++ G+Y+W+P+G + L  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPAEATLASHKLMLRAGLIKANASGLYTWMPMGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G +E+ +P +QSADLW ESGR+  YG E+LR+ DR+D    + PT EE++TDI R 
Sbjct: 61  MNRVGCVELLMPVIQSADLWKESGRWQFYGDELLRITDRHDNEFCFSPTCEEMITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFV 179
            I SY+ LP  FY I  KFRDE RPRFGVMR+REF+MKDAYSF        +  Y  M+ 
Sbjct: 121 EINSYKQLPKNFYHINTKFRDERRPRFGVMRAREFVMKDAYSFHADFESLVRDGYQPMYD 180

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +Y RIF+RLGL   P+ A++G IGG  SHEF VLAD+GE  +  S    D+    E    
Sbjct: 181 AYCRIFNRLGLNFRPVAADTGSIGGTGSHEFQVLADSGEDVIAYSDS-SDYAANVELAQT 239



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 7/227 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDS--LPENKRVS 278
           K + DF               +     +     A      D+ N    D           
Sbjct: 345 KVYADFATEKGADWVIGANQDDYHYTGFNFGRDAAEPEFVDLRNVVAGDPSPCGSGSLKL 404

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F   TKYS  M+ATF   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 405 ARGIEVGHVFQLRTKYSEAMNATFLDNNGKSQIMEMGCYGIGVTRVVAAAIEQNNDEKGI 464

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IW D++APF + ++ +        + A +KI+A L   G DV  DD  E+ G   A ++L
Sbjct: 465 IWTDAMAPFTVVIVPMNYKKSADVKAAADKIHAELLAQGVDVLLDDRDERAGVLLADSEL 524

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           LG P ++++G + + +  VE   R  G  + +++ E++    +  + 
Sbjct: 525 LGIPHRIVIGDRALKEGNVEYAERKVGESQSIAVNEIVGKIKNVLAK 571


>gi|315659856|ref|ZP_07912715.1| threonine--tRNA ligase [Staphylococcus lugdunensis M23590]
 gi|315495144|gb|EFU83480.1| threonine--tRNA ligase [Staphylococcus lugdunensis M23590]
          Length = 638

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 146/442 (33%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           YF  + +   R+      +L L   M  + + G+  +L  GQ   + +   +RE Q +  
Sbjct: 232 YFEFLREAEARNHRKLGKQLKLF--MFSEEAPGMPFYLSNGQFVRNQMENFLREIQLKND 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW ESG +D Y + M      ++      P +      IF++ ++SY
Sbjct: 290 YDEVRTPLMMNQKLWEESGHWDHYHENM-YFTKVDENDYALKPMNCPGHMLIFKNELRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +     R E      G++R R F   DA+ F       K          L++
Sbjct: 349 KDLPLRMAEFGQVHRHEFSGALNGLLRVRTFCQDDAHIF-----IMKSQIKSEVEDILKL 403

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                            I       + +   T            +    S     D++  
Sbjct: 404 ID--------------YIYSVFGFTYSIELSTRPEDYLGELKLWNEAEQSLANVLDELGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +I E   A Y    DVH   + D+L  + + +   ++    F    K+      T+  
Sbjct: 450 KYTINEGDGAFYGPKIDVH---IKDALNRSHQCATVQLD----FQMPEKFD----LTYIN 498

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              +     +      G++     ++     G   +W           +NI         
Sbjct: 499 EQNEKERPVVLHRAIFGSLDRFFGILIEHFKGAFPLW------MAPVQVNIIGVSDNNTA 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K++  L      V  DD  E++G +   + +   P  +++G     ++ V  +    
Sbjct: 553 YVNKVFEALQNNNIRVVIDDRDEKLGKKIRESQMKKIPYTLVLGDHEQENNVVSARKYSH 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              E M ++  I        + 
Sbjct: 613 EDNEVMDIQNFIAQLQEEVESK 634


>gi|260583173|ref|ZP_05850953.1| prolyl-tRNA synthetase [Haemophilus influenzae NT127]
 gi|260093791|gb|EEW77699.1| prolyl-tRNA synthetase [Haemophilus influenzae NT127]
          Length = 572

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 145/428 (33%), Positives = 204/428 (47%), Gaps = 39/428 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E     
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAV 239

Query: 236 -------------NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                          D  +  ++  +VEQ+  P   T      K  D       +  RG 
Sbjct: 240 AIGERQAPTAEMCLVDTPNAKTIAELVEQFNLPIEKTVKTLIVKGADENQPLVALIIRGD 299

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
              +         +     F         +  G   +GA+ +    I          +  
Sbjct: 300 HELNEIKAQKHPLVADPLEFADETEIKAKIGAGVGSLGAVNLNIPAIIDRTVALMSDFSC 359

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYA------------RLS-KVGCDV--FWDDMGEQ 387
                     N+     V       +               L  K G +V   +     Q
Sbjct: 360 GANIDGKHYFNVNWERDVAIPKVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIF-----Q 414

Query: 388 IGSQFAVA 395
           +G +++ A
Sbjct: 415 LGKKYSEA 422



 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 110/208 (52%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVAIPKVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +  I   D +APF ++++ +   
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGIPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R TG +E +S +++++  + +  N
Sbjct: 544 EYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|229496081|ref|ZP_04389803.1| threonyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
 gi|229316977|gb|EEN82888.1| threonyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
          Length = 672

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 146/444 (32%), Gaps = 36/444 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L          G+  WLP G +    +   +++ Q   
Sbjct: 252 EYLAVLEEAKKRDHRKIGKELELFA-FSQTVGAGLPLWLPRGTRLRLRLEDFLKKIQKDF 310

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G  ++  P + + +L+  SG Y  YG +  R     +  +  +  P +     +I+R   
Sbjct: 311 GYQQVMTPHIGNIELYKTSGHYAKYGADSFRPITTPQEGEEFMLKPMNCPHHCEIYRIKP 370

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    +    +R E      G+ R R F   DA+ F  TPE  K  + K+    
Sbjct: 371 HSYRDLPVRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPEQVKDEFLKVMDII 429

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             IF  L  ++   +                       +   S +  D    +      +
Sbjct: 430 FIIFKALKFENFEAQISLRDKNNRE-------------KYIGSDENWDRAEQAIIEACQE 476

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +     A Y    D     + D++    ++    ++                  
Sbjct: 477 KGLPAVVEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFDLE 525

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G D + H    +     G+M    AV+     G+  +W        + +       + 
Sbjct: 526 YTGEDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGRFPLWLTPDQVVVLPIG------EN 579

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   K+   L+        DD  E+IG +    +L   P  +IVG++   +  V ++ 
Sbjct: 580 FNEYAYKVRDFLANHDITATVDDRNEKIGRKIRDNELKRIPYLLIVGAQESENETVSVRK 639

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           +  G +  + L            +
Sbjct: 640 QGEGDQGSVKLSTFAEKICQEVDD 663


>gi|221066194|ref|ZP_03542299.1| threonyl-tRNA synthetase [Comamonas testosteroni KF-1]
 gi|220711217|gb|EED66585.1| threonyl-tRNA synthetase [Comamonas testosteroni KF-1]
          Length = 639

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/437 (18%), Positives = 139/437 (31%), Gaps = 36/437 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    I +HS G   W P G      V   +R      G
Sbjct: 231 YLFRLEEAEKRDHRKLGRELDLF--HIDEHSPGTVFWHPKGWAVWQQVEQYMRRVYQDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D Y + M    D   +     P +      IF+  IKSY
Sbjct: 289 YQEVKAPQILDKGLWEKTGHWDKYRENMFT-TDSEKREYALKPMNCPGHIIIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +     R+E      G+MR R F   D + F  T +  +           ++
Sbjct: 348 RDLPLRFGEFGNCHRNEPTGSLHGIMRVRAFTQDDGHIFC-TEDQIQAEVTAFTSLLQKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +I  R  + P     + E                   D    +          
Sbjct: 407 YADFGFTNILYRLSTRPEKRIGTDE-----------------AWDKAENALAEGLRASGC 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    +     L D+L    +     ++              + A F G
Sbjct: 450 EFEYLPGEGAFYGPKIEY---TLKDALGREWQCGTIQVDPNMP--------ERLDAEFVG 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +    +G++     ++   H G    W          L    A     ++
Sbjct: 499 EDGERHRPIMLHRAILGSLERFIGILVEHHSGALPAWL--APVQAAVLNITDAQADYAQE 556

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L      V  D   E+I  +     +   P  ++ G K  +   V ++ R  
Sbjct: 557 VAQKLQKALPNQSLRVVTDLRNEKITYKIREHSMQKLPYILVAGDKEKAAGAVAVRARGN 616

Query: 424 GIREDMSLEEVINYASH 440
                MS++  I   + 
Sbjct: 617 KDLGVMSVDAFIELLAK 633


>gi|303251144|ref|ZP_07337328.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307253514|ref|ZP_07535384.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302649995|gb|EFL80167.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306859015|gb|EFM91058.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 571

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 122/243 (50%), Positives = 158/243 (65%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E  +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAV 239

Query: 241 DII 243
            + 
Sbjct: 240 AVG 242



 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/194 (36%), Positives = 108/194 (55%), Gaps = 4/194 (2%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +        +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M AT +G DGK
Sbjct: 374 ERDVAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGK 433

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA-HDQVCRDACE 366
              + MG YGIG  RVVAA IE  HD +  I   D +APF ++++ +     +  +   E
Sbjct: 434 PLVMTMGCYGIGVTRVVAAAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMHKSESVQQFSE 493

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++E K+R TG +
Sbjct: 494 ELYRTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEIEYKNRRTGEK 553

Query: 427 EDMSLEEVINYASH 440
           + ++ ++++ +   
Sbjct: 554 QMIAKDQLLAFLKE 567


>gi|269797927|ref|YP_003311827.1| prolyl-tRNA synthetase [Veillonella parvula DSM 2008]
 gi|269094556|gb|ACZ24547.1| prolyl-tRNA synthetase [Veillonella parvula DSM 2008]
          Length = 572

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 113/235 (48%), Positives = 158/235 (67%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  +K + P L+E P DA++ S +LMLR G + + + G+YS+LPLG K++  + AI+REE
Sbjct: 1   MLATKLYAPTLREVPSDADVVSQQLMLRAGFMRKTANGLYSFLPLGWKSIKKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A E+ +P LQ A++W ESGR+++YG EM+R+ DR+D     GPTHEE++T + ++
Sbjct: 61  MDRASAQEIMMPILQPAEIWKESGRWNAYGAEMMRINDRHDNEFCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPR+G+MRSREF+MKDAYSFD+   G   SY  M+ +
Sbjct: 121 EINSYRQLPVNLYQIQSKFRDERRPRYGLMRSREFIMKDAYSFDIDEAGLDESYKSMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL   P+ A+SG IGG  +HEF+ +A+ GE  +       D+    E
Sbjct: 181 YTRIFTRCGLTFRPVEADSGAIGGSGTHEFMAIAEAGEADIVYCTKC-DYAANIE 234



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 3/232 (1%)

Query: 216 TGETQVFCSKDFMD-FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           T E  +   +  M+ + +       D      +    +       + +      D  P+ 
Sbjct: 340 TDEFAIVVDESVMETYNVCGGANKKDAHYVNINPKRDFNVEDIIVAPIRLITKDDVCPKC 399

Query: 275 K--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                 A+GIEVG +F  GTKYS  + ATF   +G+ + + MG YGIG  R +AA IE  
Sbjct: 400 GGALEHAKGIEVGQVFKLGTKYSEALQATFLDQNGRPNPMIMGCYGIGVSRTLAAAIEQY 459

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           HD  GIIWP S+APF+  ++ I A D+      + IY  L   G DV  DD  ++ G +F
Sbjct: 460 HDENGIIWPRSIAPFEAVIVPINAKDEALMATSQTIYTALQNAGVDVLLDDRKDRAGVKF 519

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             ADL+G+PL++ V    + +++VEI+ R +G     +++ V +  +    +
Sbjct: 520 KDADLIGYPLRITVSKNTLENNEVEIQIRKSGEALPCAIDSVADKVTELLQD 571


>gi|148545068|ref|YP_001272438.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Lactobacillus
           reuteri DSM 20016]
 gi|148532102|gb|ABQ84101.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Lactobacillus
           reuteri DSM 20016]
          Length = 601

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 155/441 (35%), Gaps = 36/441 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD  +  ++L L    +  +   G+  WLP G      +   I + +   G  
Sbjct: 189 KRQEAKERDHRVIGNQLDLF--FVDPKVGAGLPYWLPKGATIRRTIERYIIDREVADGYQ 246

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + D +  SG ++ Y  +M    D  D  M    P +      +++ HI+SYR
Sbjct: 247 HVYTPVLMNLDAYKTSGHWEHYRDDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSYR 306

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++
Sbjct: 307 DLPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVTLDQIRSE-FAKILKLIMSVY 365

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +     R                       + + + +  +       +  DD+   
Sbjct: 366 EDFDITDYSFRLSLRD-------------PKNVKKYYANDEMWEKSQSMLKSAMDDLNLD 412

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    D+  +    +L  ++ +S   ++    F    ++      ++ G 
Sbjct: 413 YYEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLSYVGQ 461

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK+H    +    +G M    A +   + G    W             I  +++   + 
Sbjct: 462 DGKEHQPVMIHRGVVGTMERFMAYLTEIYKGAFPTWLAPEQVH-----IIPVNEEAHGEY 516

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  ++      V  D   E++G +   A     P  ++VG    +++ V ++     
Sbjct: 517 ADDLAKKMKAANIRVNVDHRNEKMGYKIREAQTQKVPYTLVVGDDEKNNNGVSVRKYGEK 576

Query: 425 IREDMSLEEVINYASHRFSNN 445
            + +MS E  +N      ++ 
Sbjct: 577 EQNEMSQEAFMNEILEDIASY 597


>gi|184154400|ref|YP_001842741.1| threonyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227364219|ref|ZP_03848315.1| threonine--tRNA ligase [Lactobacillus reuteri MM2-3]
 gi|325683422|ref|ZP_08162938.1| threonine--tRNA ligase [Lactobacillus reuteri MM4-1A]
 gi|183225744|dbj|BAG26261.1| threonyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227070764|gb|EEI09091.1| threonine--tRNA ligase [Lactobacillus reuteri MM2-3]
 gi|324977772|gb|EGC14723.1| threonine--tRNA ligase [Lactobacillus reuteri MM4-1A]
          Length = 627

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 155/441 (35%), Gaps = 36/441 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD  +  ++L L    +  +   G+  WLP G      +   I + +   G  
Sbjct: 215 KRQEAKERDHRVIGNQLDLF--FVDPKVGAGLPYWLPKGATIRRTIERYIIDREVADGYQ 272

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + D +  SG ++ Y  +M    D  D  M    P +      +++ HI+SYR
Sbjct: 273 HVYTPVLMNLDAYKTSGHWEHYRDDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSYR 332

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++
Sbjct: 333 DLPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVTLDQIRSE-FAKILKLIMSVY 391

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +     R                       + + + +  +       +  DD+   
Sbjct: 392 EDFDITDYSFRLSLRD-------------PKNVKKYYANDEMWEKSQSMLKSAMDDLNLD 438

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    D+  +    +L  ++ +S   ++    F    ++      ++ G 
Sbjct: 439 YYEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLSYVGQ 487

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK+H    +    +G M    A +   + G    W             I  +++   + 
Sbjct: 488 DGKEHQPVMIHRGVVGTMERFMAYLTEIYKGAFPTWLAPEQVH-----IIPVNEEAHGEY 542

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  ++      V  D   E++G +   A     P  ++VG    +++ V ++     
Sbjct: 543 ADDLAKKMKAANIRVNVDHRNEKMGYKIREAQTQKVPYTLVVGDDEKNNNGVSVRKYGEK 602

Query: 425 IREDMSLEEVINYASHRFSNN 445
            + +MS E  +N      ++ 
Sbjct: 603 EQNEMSQEAFMNEILEDIASY 623


>gi|307246760|ref|ZP_07528828.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307255744|ref|ZP_07537547.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307260196|ref|ZP_07541905.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306852335|gb|EFM84572.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306861304|gb|EFM93295.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306865741|gb|EFM97620.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 571

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 122/243 (50%), Positives = 158/243 (65%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E  +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAV 239

Query: 241 DII 243
            + 
Sbjct: 240 AVG 242



 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     ++  +  A     +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNVNWERDAAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
            AT +G DGK   + MG YGIG  RVVAA IE  HD +  I   D +APF ++++ +   
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFSEELYRTLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++ +      
Sbjct: 544 EYKNRRTGEKQMIAKDQLLAFLKENVK 570


>gi|303252707|ref|ZP_07338869.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307248901|ref|ZP_07530912.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302648446|gb|EFL78640.1| prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306854596|gb|EFM86788.1| Prolyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 571

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 122/243 (50%), Positives = 158/243 (65%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVDKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E  +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAV 239

Query: 241 DII 243
            + 
Sbjct: 240 AVG 242



 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 111/207 (53%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     ++  +  A     +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNVNWERDAAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
            AT +G DGK   + MG YGIG  RVVAA IE  HD +  I   D +APF ++++ +   
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L     DV +DD  E+ G  FA  +L+G P  V++G K +++ ++
Sbjct: 484 KSESVQQFSEELYRTLKAQDVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLANGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG ++ ++ ++++ +      
Sbjct: 544 EYKNRRTGEKQMIAKDQLLAFLKENVK 570


>gi|50751644|ref|XP_422493.1| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative) [Gallus gallus]
          Length = 470

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 151/430 (35%), Positives = 217/430 (50%), Gaps = 37/430 (8%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
            SH+LML+ G+IH  S G Y  LP   ++++ +  +I       G  ++++P+L SA+LW
Sbjct: 64  RSHRLMLQGGLIHPASPGCYHLLPPAVRSMEKLIRLIDGAMRNIGGQKVNMPSLSSAELW 123

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKF 139
             SGR++  G E+ RLADR+ K    GPTHEE +T  +      SYR LP   YQ+  KF
Sbjct: 124 RTSGRWEQMGPELFRLADRHGKEYCLGPTHEEAVTELVAAHSNLSYRQLPLRLYQVTRKF 183

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE +PRFG++RSREF MKD Y+FD + E ++H+Y  +  +Y  +F RLGL+ + +RA +
Sbjct: 184 RDEPKPRFGLLRSREFYMKDMYTFDASEEAARHTYELVCTAYRSLFKRLGLRCVQVRAAT 243

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G IGG  SHEF + AD GE ++                                   A  
Sbjct: 244 GTIGGTASHEFQLPADIGEDRLVLCPA--------------------------GHFAANV 277

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
             V  E+        K   +RGIEVGH FY GTKYS   +A F   + K    +MG YG+
Sbjct: 278 EMVDEEQTACPACGEKLTQSRGIEVGHTFYLGTKYSSVHNAAFYTPENKLQLAEMGCYGL 337

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC------EKIYARL- 372
           G  R++AA IE       I WP  +AP+++  I  K   +  R A       + +   L 
Sbjct: 338 GVTRILAASIEVLSTEDSIRWPSLIAPYQVCFIPPKKGSREERGAALLEHLYDDVAEALP 397

Query: 373 SKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV-EIKHRLTGIREDMS 430
              G DV  DD  +  IG +   A+ LG+P  V+ G +   D  V E+  + +G    ++
Sbjct: 398 RLAG-DVVLDDRTQMTIGKRLKDANKLGYPYVVVAGRRVCEDPPVFEVWDQSSGTVLYLT 456

Query: 431 LEEVINYASH 440
            E VI   S 
Sbjct: 457 KEGVIELLSK 466


>gi|212213390|ref|YP_002304326.1| prolyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
 gi|212011800|gb|ACJ19181.1| prolyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
          Length = 566

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 130/237 (54%), Positives = 169/237 (71%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM+ + + G+Y+WLPLG + L  V  ++REE
Sbjct: 3   MKVSQFFLATVKETPADAVLASHQLMIRAGMLRKLASGLYTWLPLGLRVLQKVADVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 63  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 123 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S    D+    E  
Sbjct: 183 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSD-ESDYAANIEKA 238



 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/203 (40%), Positives = 112/203 (55%), Gaps = 4/203 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
           DD   +N   E+   P  + +D+      D  P+ K     ARGIEVG +F  G KYS  
Sbjct: 365 DDFHWINVNWER-DVPLGSVADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRQ 423

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+AT     GK  Y+QMG YGIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H
Sbjct: 424 MNATVVDELGKSRYLQMGCYGIGVSRTVAAAIEQNHDERGIIWPTPMAPFFIALVPVNMH 483

Query: 358 DQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                R+ACEK+Y  L   G +V WDD  E+ G  FA  DL+G P ++++    +    V
Sbjct: 484 KSYRVREACEKLYNELIDAGYEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIV 543

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
           E K R +   E++SLE V++   
Sbjct: 544 EYKARKSKEAENVSLENVLSVFR 566


>gi|209364247|ref|YP_001425332.2| prolyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
 gi|207082180|gb|ABS76694.2| prolyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
          Length = 566

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 130/237 (54%), Positives = 169/237 (71%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM+ + + G+Y+WLPLG + L  V  ++REE
Sbjct: 3   MKVSQFFLATVKETPADAVLASHQLMIRAGMLRKLASGLYTWLPLGLRVLQKVADVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 63  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 123 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S    D+    E  
Sbjct: 183 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSD-ESDYAANIEKA 238



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 82/203 (40%), Positives = 112/203 (55%), Gaps = 4/203 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
           DD   +N   E+   P  + +D+      D  P+ K     ARGIEVG +F  G KYS  
Sbjct: 365 DDFHWINVNWER-DVPLGSVADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRK 423

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+AT     GK  Y+QMG YGIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H
Sbjct: 424 MNATVVDELGKSRYLQMGCYGIGVSRTVAAAIEQNHDERGIIWPTPMAPFFIALVPVNMH 483

Query: 358 DQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                R+ACEK+Y  L   G +V WDD  E+ G  FA  DL+G P ++++    +    V
Sbjct: 484 KSYRVREACEKLYNELIDAGYEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIV 543

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
           E K R +   E++SLE V++   
Sbjct: 544 EYKARKSKEAENVSLENVLSVFR 566


>gi|160900913|ref|YP_001566495.1| prolyl-tRNA synthetase [Delftia acidovorans SPH-1]
 gi|226699138|sp|A9BP65|SYP_DELAS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160366497|gb|ABX38110.1| prolyl-tRNA synthetase [Delftia acidovorans SPH-1]
          Length = 581

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 117/237 (49%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMTRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A++W E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVEVTMPVVQPAEMWEETGRFEKMGPELLRIKDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + ++ SY  M  +
Sbjct: 121 ELKSYKQLPKNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDKDRDTAQISYQTMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL+   +RA+SG IGGDLS EF V+A TGE  +       D+    E  
Sbjct: 181 YKRIFDRFGLQYRAVRADSGAIGGDLSEEFQVIASTGEDAIVYC-PSSDYAANIEKA 236



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/188 (38%), Positives = 110/188 (58%), Gaps = 3/188 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+   +    RGIEVGH+FY GTKYS  M+ATF   +GK    +MG
Sbjct: 392 VVADLRNVVAGDKSPDGAGELAIERGIEVGHVFYLGTKYSQAMNATFLAENGKPSLFEMG 451

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
            YGIG  R+ AA IE +HD +GIIWPD++APF + +  I     +  ++A EK++A L  
Sbjct: 452 CYGIGVTRLPAAAIEQNHDERGIIWPDAIAPFTVVVCPIGMDRSEPVKEAAEKLHAELLA 511

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G DV  DD GE+ G+ FA  +L+G P +V++  + + + +VE +HR       M+  +V
Sbjct: 512 LGVDVILDDRGERPGAMFADWELIGVPHRVVLSDRGLKEGQVEYQHRRDTEATKMAAADV 571

Query: 435 INYASHRF 442
           + +   R 
Sbjct: 572 LGHLKQRL 579


>gi|325298803|ref|YP_004258720.1| threonyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
 gi|324318356|gb|ADY36247.1| threonyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
          Length = 647

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 150/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 231 EYLVMLEEAKKRDHRKIGKEMDLFM-FSDMVGKGLPMWLPKGTALRIRLQDFLRRIQARY 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L+V SG Y  YGK+  +        +     P +      I+R+  
Sbjct: 290 DYQEVMCPPIGNKLLYVTSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYRNSP 349

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 350 RSYRDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDII 408

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D    + +   D           +   
Sbjct: 409 SIVFKSMNFENFEAQISLR--------------DKVNREKYIGSDENWEKAEQAIVEACQ 454

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++                 
Sbjct: 455 EKGLKAKVEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQL 503

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GAD + H    +     G+M    AV+     GK  +W           + +    +
Sbjct: 504 EYMGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAVLPISE 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  +++   L K       DD  E+IG +    ++   P  +IVG K  ++ +V ++
Sbjct: 558 KFNEYADQVRLELKKYDIRALVDDRNEKIGRKIRDNEMKHIPYMLIVGEKEAANGEVSVR 617

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  + +EE     +    N
Sbjct: 618 KQGEGDKGTVKIEEFAKNIAEEVHN 642


>gi|289550561|ref|YP_003471465.1| Threonyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|315658055|ref|ZP_07910928.1| threonine--tRNA ligase [Staphylococcus lugdunensis M23590]
 gi|289180093|gb|ADC87338.1| Threonyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|315496945|gb|EFU85267.1| threonine--tRNA ligase [Staphylococcus lugdunensis M23590]
          Length = 645

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 154/445 (34%), Gaps = 33/445 (7%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD       L L T        G+  WLP G      +   I +++  
Sbjct: 229 KAHLQLLEERRERDHRKIGKDLELFTNN-QLVGAGLPLWLPNGATIRREIERYIVDKEVS 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
            G   +  P L + DL+  SG +  Y  +M      ++   M+  P +      I+++  
Sbjct: 288 MGYDHVYTPVLANVDLYRTSGHWAHYRDDMFPPMKLDENEEMVLRPMNCPHHMMIYKNKP 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SYR LP    ++    R E       ++    +  +     + P+  K  + ++     
Sbjct: 348 HSYRELPIRLAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKDEFKRVVHMIQ 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDD 241
            ++   G +    R                  D  + + +   D M     S      D+
Sbjct: 408 DVYKDFGFEDYTFRLS--------------YRDPEDKEKYMDDDDMWNKAESMLKEAVDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  ++ + + +S   ++    F    ++      T
Sbjct: 454 LGLPYVEAIGEAAFYGPKLDV---QVKTAMGKEETLSTAQLD----FLLPERF----ELT 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G+DG+ H   +   G+ +         +           +    +I  +N+  H    
Sbjct: 503 YIGSDGEYHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVEIIPVNVDLH---- 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    +   L   G  V  DD  E++G +   A +   P Q++VG K V +++V ++  
Sbjct: 559 YDYARNLQDELKSQGVRVEIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQY 618

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +  ++ +  +E I          +
Sbjct: 619 GSQDQQTLERDEFIWNLVDEIRLKK 643


>gi|16272670|ref|NP_438888.1| prolyl-tRNA synthetase [Haemophilus influenzae Rd KW20]
 gi|260579822|ref|ZP_05847652.1| prolyl-tRNA synthetase [Haemophilus influenzae RdAW]
 gi|1174537|sp|P43830|SYP_HAEIN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|1573733|gb|AAC22388.1| prolyl-tRNA synthetase (proS) [Haemophilus influenzae Rd KW20]
 gi|260093106|gb|EEW77039.1| prolyl-tRNA synthetase [Haemophilus influenzae RdAW]
          Length = 572

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 146/428 (34%), Positives = 204/428 (47%), Gaps = 39/428 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E     
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAI 239

Query: 236 -------------NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                          D  +  ++  +VEQ+  P   T      K  D       +  RG 
Sbjct: 240 AIGERQAPTAEMCLVDTPNAKTIAELVEQFNLPIEKTVKTLIVKGADENQPLVALIIRGD 299

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
              +         +     F         +  G   +GA+ +    I          +  
Sbjct: 300 HELNEIKAQKHPLVADPLEFADETEIKAKIGSGVGSLGAVNLNIPAIIDRTVALMSDFSC 359

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYA------------RLS-KVGCDV--FWDDMGEQ 387
                     N+     V       +               L  K G +V   +     Q
Sbjct: 360 GANIDGKHYFNVNWERDVAIPKVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIF-----Q 414

Query: 388 IGSQFAVA 395
           +G +++ A
Sbjct: 415 LGKKYSEA 422



 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 110/208 (52%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVAIPKVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +  I   D +APF ++++ +   
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R TG +E +S +++++  + +  N
Sbjct: 544 EYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|253995828|ref|YP_003047892.1| prolyl-tRNA synthetase [Methylotenera mobilis JLW8]
 gi|253982507|gb|ACT47365.1| prolyl-tRNA synthetase [Methylotenera mobilis JLW8]
          Length = 573

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 115/235 (48%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F    +E P +AE+ SH LM+R G+I +   G+YSW+PLG + L  V  ++REE
Sbjct: 1   MRASQFFFNTQKEAPNEAELQSHILMVRAGLIKRLGSGLYSWMPLGLRVLRKVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+ +P +Q  +LW E+GR+  +G +ML++ DR+++   +GPTHEEV+TDI R 
Sbjct: 61  MNNAGALELLMPAVQPKELWEETGRWAVFGPQMLKIQDRHEREFCFGPTHEEVITDIARK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EIRSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFMMKDAYSFHTDFASLEQTYDTMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  +F RLGLK   ++A++G IGGD SHEF VLAD+GE  +   +   DF    E
Sbjct: 181 YSNVFTRLGLKFRAVKADTGAIGGDGSHEFHVLADSGEDGLAYCET-SDFAANVE 234



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/186 (37%), Positives = 107/186 (57%), Gaps = 3/186 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D+ P+ K V    RGIEVGHIF   TKYS  MSAT+   +G+   ++MG 
Sbjct: 387 VADIRNVVAGDASPDGKGVLSLCRGIEVGHIFQLRTKYSEAMSATYLDENGQTQVMEMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+V A IE  +D +GII+P S+APF++ +  I     +  + A +K++  L   
Sbjct: 447 YGIGVSRIVGAAIEQGNDERGIIFPKSMAPFEVVICAIGYDKSEAVQAATKKLHDELQAA 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD GE+ G  FA ADL+G P ++++G + +++  VE K R     + ++L  V+
Sbjct: 507 GVDVLLDDRGERPGVMFAEADLMGIPHRLVIGERGLNEGNVEYKARTQADAQSVALASVV 566

Query: 436 NYASHR 441
            +    
Sbjct: 567 EFVQKL 572


>gi|302121711|gb|ADK92877.1| threonyl-tRNA synthetase [Hypericum perforatum]
          Length = 721

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 147/445 (33%), Gaps = 42/445 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   +E  R D       L L +  I  +   G+  W P G      +    ++   
Sbjct: 312 KAYLHFKEEAKRRDHRRLGQDLDLFS--IQDEAGGGLVFWHPKGAIVRHIIEDAWKKMHI 369

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +  ADLW  SG  D Y + M       D+     P +      I++   
Sbjct: 370 ANGYELLYTPHVAKADLWKISGHLDFYRENMFEQMKIEDEQYQLRPMNCPYHILIYKRKQ 429

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+ P    ++   +R EL     G+ R R F   DA+ F L  +        +    
Sbjct: 430 NSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDE-IRGVLDLT 488

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I    G     +   + P                  +     +  D    +     DD
Sbjct: 489 EEILLLFGFSRYEVNLSTRP-----------------EKAVGGDEIWDKATNALRNALDD 531

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D+L    + S   ++    F    ++      T
Sbjct: 532 KGWDYEIDEGGGAFYGPKIDL---KIEDALGRKWQCSTIQVD----FNLPQRFD----IT 580

Query: 302 FKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  A  +      +    +G++     V+    +     +P  + P ++ ++ +  +   
Sbjct: 581 YVDATSEKKRPILIHRAVLGSLERFFGVLI---EHYAGDFPLWLTPIQVRVLPVTDN--- 634

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             + C ++  +L   G        GE++      A+    PL  +VG K V    V ++ 
Sbjct: 635 QLEFCNEVTRKLKDSGVRAEV-CHGERLPKLIRNAEKQKVPLMAVVGPKEVETQTVTVRS 693

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R +G    + +++ I+         
Sbjct: 694 RSSGDVGTIDIDDFISRIKSTVEER 718


>gi|259502210|ref|ZP_05745112.1| threonine-tRNA ligase [Lactobacillus antri DSM 16041]
 gi|259169828|gb|EEW54323.1| threonine-tRNA ligase [Lactobacillus antri DSM 16041]
          Length = 600

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 153/441 (34%), Gaps = 36/441 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +    D  +  ++L L    +  +   G+  W+P G      +   I + +   G  
Sbjct: 188 KRQEAREHDHRVIGNQLDLF--FVDPKVGAGLPYWMPKGATIRRTIERYIIDREVADGYE 245

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + D +  SG ++ Y  +M    D  D  M    P +      I++ HI+SYR
Sbjct: 246 HVYTPVLMNLDAYKTSGHWEHYRDDMFPPMDMGDGEMLEIRPMNCPSHIQIYKHHIRSYR 305

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++
Sbjct: 306 DLPMRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVAVDQIRDE-FAKILNLIMDVY 364

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +     R                     + + + + +  D          DD+   
Sbjct: 365 KDFDITDYSFRLSLRD-------------PKNKEKYYGNDEMWDESQKLLKAAMDDLNLD 411

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    D+  +    +L  ++ +S   ++      FG         ++ G 
Sbjct: 412 YYEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLDFMQPDRFG--------LSYVGK 460

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK+H    +    +G M    A +   + G    W             I   D+   D 
Sbjct: 461 DGKEHMPVMIHRGIVGTMERFVAYLTEIYKGAFPTWLAPEQVH-----IIPVSDEKHGDY 515

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  ++      V  DD  E++G +   A     P  ++VG   V D+ V ++     
Sbjct: 516 AKQLADKMKAAQIRVVVDDRNEKMGYKIREAQTQKVPYTLVVGDDEVKDNAVSVRKYGEE 575

Query: 425 IREDMSLEEVINYASHRFSNN 445
            +  MS +  +N      ++ 
Sbjct: 576 AQNSMSQDAFMNEILADIASY 596


>gi|204636657|gb|ACI01751.1| putative threonyl-tRNA synthetase [Escherichia coli]
          Length = 652

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 141/436 (32%), Gaps = 39/436 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +     +   RD      +L L       ++ G   W P G     ++ A +R      G
Sbjct: 243 WLEKTAEAEKRDHRKLGRELDLF--HFQDNAPGAVFWHPRGWTIFQSLIAYMRSRHEVAG 300

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E++ P +    LW  SG +D+Y   M      + +     P +      +F+  IKSY
Sbjct: 301 YVEVNTPDVMDRSLWEISGHWDNYRDHMFTTQTEDGRNFALKPMNCPGAVSLFKYGIKSY 360

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G++R R F   DA+ F    +        +    L I
Sbjct: 361 RDLPVRLSEFGKVHRYEPSGSLHGLLRVRHFTQDDAHIFCTLQQVEGEC-KSILQLVLDI 419

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G + + ++  + P                      S    D    + +   +    
Sbjct: 420 YKQFGFEEVAIKLSTRPEKR-----------------MGSDADWDRLENALSASLEAQGL 462

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             S+     A Y    +     L D++  + +     +++                 +  
Sbjct: 463 QWSVNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVDMNLP--------ERFDIGYIA 511

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +     G++     ++    +      P  ++P +  ++ I         
Sbjct: 512 EDGSTKRPVMLHRALFGSLERFTGILL---EHYVGKLPAWLSPVQAVVMTITDK---QHH 565

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++   L K G     D   E+IG +     L   P  +IVG    + ++V ++ R  
Sbjct: 566 YAEQVLKALRKKGLRCEADLRNEKIGFKIREQTLARIPYLLIVGDAEENAARVTVRDRTG 625

Query: 424 GIREDMSLEEVINYAS 439
                + L E  +   
Sbjct: 626 RCMGTLLLNEAADAIK 641


>gi|308272327|emb|CBX28933.1| Threonyl-tRNA synthetase [uncultured Desulfobacterium sp.]
          Length = 637

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 141/443 (31%), Gaps = 41/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   R+       L L +   H  + G+  + P G    + + +  + E    G
Sbjct: 227 YLHFIEEAKKRNHRKIGMVLDLFS--FHDEAPGMPFFHPKGMSVWEALISYWKIEHRAAG 284

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E   P + +  LW  SG +++Y + M      ++      P +      +F     SY
Sbjct: 285 YVETKTPIMLNRSLWERSGHWENYRENMYTSV-VDETEYAIKPMNCPGGMLLFGMKPHSY 343

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +I L  R EL     G+ R R F   DA+ F               +  L++
Sbjct: 344 KDLPLRSAEIGLVHRHELSGVLSGLFRVRAFHQDDAHIFMTP-----EQIESEILGVLKL 398

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             R+                     F +   T   +   + +          +       
Sbjct: 399 VERIYSTFGLS--------------FHLELSTRPEKSIGNDEQWAVATKGLESALKTYGV 444

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    D+H   + D+L    +     +++                ++  
Sbjct: 445 DYKTNEGDGAFYGPKIDIH---IKDALGRTWQCGTVQLDMALP--------ERFDLSYID 493

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +      +     G++     ++    +     +P  +AP + +L+ I         
Sbjct: 494 KNNEKCRPIMIHRVIYGSIERFFGILI---EHFAGKFPLWMAPVQAALLPIN---DELIP 547

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               I   L K G     D   E +  +   A L   PL +  G K +    V +++   
Sbjct: 548 YAAGIRDVLEKEGIRTELDSRTESLKKKIRDAQLSYVPLIITCGPKEMESGTVSVRNLSG 607

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
            I+  +++E+ +     +    +
Sbjct: 608 KIKYGVTIEDFVKIVLFQIKERK 630


>gi|258644607|dbj|BAI39857.1| putative threonyl-tRNA synthetase [Oryza sativa Indica Group]
          Length = 749

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 159/446 (35%), Gaps = 38/446 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  +Y   + +   RD  +      L     HQ S G   +LP G    + +   +R++ 
Sbjct: 341 RLKEYKHLLEEAKKRDHRLLGQTQDLF--FFHQLSPGSCFFLPHGAIIYNKLMDFLRQQY 398

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + +  LW  SG   +Y + M  + +   +     P +      +F   
Sbjct: 399 RDRGYQEVLSPNIYNMQLWETSGHAANYKENMF-VFEIEKQEFGLKPMNCPGHCLMFEHR 457

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP       +  R+EL     G+ R R F   DA+ F       K     +   
Sbjct: 458 VRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCR-ESQIKDEVKAVLDF 516

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G K   +   + P       E                   +          +
Sbjct: 517 INYVYEIFGFKYE-LELSTRPEKYLGDIE-----------------TWNKAEQQLTEALN 558

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +      I E   A Y    D+    +FD+L    + +   ++    F    ++ L  SA
Sbjct: 559 EFGKPWQINEGDGAFYGPKIDIG---VFDALKRKFQCATLQLD----FQLPLRFKLTYSA 611

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                   +  V +    +G++  + A++    +     WP  ++P +  + +I ++   
Sbjct: 612 E--DEAKLERPVMIHRAILGSVERMFAILL---EHYNGKWPLWLSPRQAIVCSISSNS-- 664

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +++ AR+ + G  V  D+    I  +   A L  F   ++VG++     +V ++ 
Sbjct: 665 -VEYAKQVRARIHEAGFHVAIDETDRTIQKKVREAQLAQFNYILVVGAQEAETGQVSVRV 723

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R       +S++++I       +  +
Sbjct: 724 RDKAELATVSIDDIITRFKEEVAAYK 749


>gi|58425026|gb|AAW74063.1| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 595

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 116/250 (46%), Positives = 156/250 (62%), Gaps = 1/250 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 32  MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 91

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 92  MDRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 151

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 152 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 211

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +       D+    E     
Sbjct: 212 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAF-STGSDYAANVETASAA 270

Query: 241 DIISLNSIVE 250
                 +  E
Sbjct: 271 LPAPRAAASE 280



 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 1/193 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +       P       +  +   +    +   ARGIEVGH+F  G++Y+  + AT     
Sbjct: 401 NWGRDLPEPETVADVRNVVEGERAADGGELRLARGIEVGHVFQLGSQYAQALQATVIDEG 460

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDAC 365
           GK   ++MG YGIG  R+VAA IE +HD  GIIWP  +AP+++ +  I    D     A 
Sbjct: 461 GKVAVMKMGCYGIGISRIVAAAIEQNHDDAGIIWPAPMAPWQVVVCVINPKQDAQVVSAA 520

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +   L   G D   DD G + G+ FA  +LLG P +V+V  + ++    E + R    
Sbjct: 521 QALLDELIAAGLDAALDDRGLRPGAMFADMELLGIPHRVVVSERGLAAGTFEYRARTAAA 580

Query: 426 REDMSLEEVINYA 438
            E++    + +  
Sbjct: 581 AENLDKAGLFSRL 593


>gi|153808043|ref|ZP_01960711.1| hypothetical protein BACCAC_02329 [Bacteroides caccae ATCC 43185]
 gi|149129652|gb|EDM20866.1| hypothetical protein BACCAC_02329 [Bacteroides caccae ATCC 43185]
          Length = 646

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 150/444 (33%), Gaps = 39/444 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      ++ L         KG+  WLP G      +   +R  Q R  
Sbjct: 231 YLALLEEAKKRDHRKIGKEMQLFM-FSETVGKGLPMWLPKGTALRLRLQDFLRRIQTRYD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             E+  P + +  L+V SG Y  YGK+  +        +     P +     +I+++  +
Sbjct: 290 YQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEIYKNFPR 349

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    +     R E      G+ R R F   DA+ F    +     + ++     
Sbjct: 350 SYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDIIS 408

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  +  ++   +                  D    + +   D           +  + 
Sbjct: 409 IVFRSMNFQNFEAQISLR--------------DKVNREKYIGSDDNWEKAEQAIIEACEE 454

Query: 243 ISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             L + +E    A Y    D     + D++    ++    ++                  
Sbjct: 455 KGLPAKIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFELE 503

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G+D + H    +     G+M    AV+     GK  +W           + I    + 
Sbjct: 504 YMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPEQVVILPISEK 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  E++   L         DD  E+IG +    ++   P  +IVG K   + +V ++ 
Sbjct: 558 FNDYAEQVKMYLKTHEIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVRR 617

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           +  G +  M  EE     +    N
Sbjct: 618 QGEGDKGTMKFEEFAKILNEEVQN 641


>gi|124023562|ref|YP_001017869.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
 gi|166225478|sp|A2CAU4|SYT_PROM3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123963848|gb|ABM78604.1| Threonyl-tRNA synthatase [Prochlorococcus marinus str. MIT 9303]
          Length = 640

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 150/442 (33%), Gaps = 41/442 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD    + ++ L      + + G+  W   G      +   IRE  + 
Sbjct: 229 KAYLKRLEEAEKRDHRRIAKQMSLF--HTQEEAPGMIFWHAKGWAIYQVLEQYIRETLSL 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW +SG ++ +  +M       ++     P +      IF   +K
Sbjct: 287 HAYQEIRTPQVVDRSLWEKSGHWEKFKDDMFTTT-SENREYAIKPMNCPCHVQIFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T    +   +K      
Sbjct: 346 SYRDLPIRLAEFGSCLRNEPSGSLHGLMRVRNFVQDDAHIFC-TELQVQEEVSKFIDLVF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G  S+ ++  + P     S E                   D    + +   D  
Sbjct: 405 EIYRSFGFDSVLIKLSTRPEKRVGSDE-----------------IWDKSEKALSDALDAK 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                ++    A Y    +     L D L    +     ++       G        A++
Sbjct: 448 GLAWDLLPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQVDFSMPERLG--------ASY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D +      +    +G+      ++    +      P  +AP +++++ I   +   
Sbjct: 497 VAEDSQRRTPVMLHRAILGSFERFIGILI---EHYAGRMPVWLAPVQVAVMGITDRNA-- 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              C+ +  +LS +      D   E+IG +     L   P  +I+G K     +V ++ R
Sbjct: 552 -QTCQDVCKKLSALEYRTEVDLRNEKIGFKVREHTLQRVPFLIIIGDKEQQSGEVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFS 443
                  M L   I+      +
Sbjct: 611 EGKDFGSMPLNSFISLLDEAIA 632


>gi|122879049|ref|YP_199448.6| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|162319805|ref|YP_449766.2| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188578630|ref|YP_001915559.1| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|114152279|sp|Q2P7I5|SYP_XANOM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152280|sp|Q5H4Q7|SYP_XANOR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701357|sp|B2SPG9|SYP_XANOP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|188523082|gb|ACD61027.1| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 564

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 116/250 (46%), Positives = 156/250 (62%), Gaps = 1/250 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MDRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +       D+    E     
Sbjct: 181 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAF-STGSDYAANVETASAA 239

Query: 241 DIISLNSIVE 250
                 +  E
Sbjct: 240 LPAPRAAASE 249



 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 1/193 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +       P       +  +   +    +   ARGIEVGH+F  G++Y+  + AT     
Sbjct: 370 NWGRDLPEPETVADVRNVVEGERAADGGELRLARGIEVGHVFQLGSQYAQALQATVIDEG 429

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDAC 365
           GK   ++MG YGIG  R+VAA IE +HD  GIIWP  +AP+++ +  I    D     A 
Sbjct: 430 GKVAVMKMGCYGIGISRIVAAAIEQNHDDAGIIWPAPMAPWQVVVCVINPKQDAQVVSAA 489

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +   L   G D   DD G + G+ FA  +LLG P +V+V  + ++    E + R    
Sbjct: 490 QALLDELIAAGLDAALDDRGLRPGAMFADMELLGIPHRVVVSERGLAAGTFEYRARTAAA 549

Query: 426 REDMSLEEVINYA 438
            E++    + +  
Sbjct: 550 AENLDKAGLFSRL 562


>gi|84366334|dbj|BAE67492.1| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 583

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 116/250 (46%), Positives = 156/250 (62%), Gaps = 1/250 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 20  MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 79

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 80  MDRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 139

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 140 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 199

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +       D+    E     
Sbjct: 200 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAF-STGSDYAANVETASAA 258

Query: 241 DIISLNSIVE 250
                 +  E
Sbjct: 259 LPAPRAAASE 268



 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 1/193 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +       P       +  +   +    +   ARGIEVGH+F  G++Y+  + AT     
Sbjct: 389 NWGRDLPEPETVADVRNVVEGERAADGGELRLARGIEVGHVFQLGSQYAQALQATVIDEG 448

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDAC 365
           GK   ++MG YGIG  R+VAA IE +HD  GIIWP  +AP+++ +  I    D     A 
Sbjct: 449 GKVAVMKMGCYGIGISRIVAAAIEQNHDDAGIIWPAPMAPWQVVVCVINPKQDAQVVSAA 508

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +   L   G D   DD G + G+ FA  +LLG P +V+V  + ++    E + R    
Sbjct: 509 QALLDELIAAGLDAALDDRGLRPGAMFADMELLGIPHRVVVSERGLAAGTFEYRARTAAA 568

Query: 426 REDMSLEEVINYA 438
            E++    + +  
Sbjct: 569 AENLDKAGLFSRL 581


>gi|301169449|emb|CBW29049.1| prolyl-tRNA synthetase [Haemophilus influenzae 10810]
          Length = 572

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 146/428 (34%), Positives = 204/428 (47%), Gaps = 39/428 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E     
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAI 239

Query: 236 -------------NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                          D  +  ++  +VEQ+  P   T      K  D       +  RG 
Sbjct: 240 AIGERQAPTAEMCLVDTPNAKTIAELVEQFNLPIEKTVKTLIVKGADENQPLVALIIRGD 299

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
              +         +     F         +  G   +GA+ +    I          +  
Sbjct: 300 HELNEIKAQKHPLVADPLEFADETEIKAKIGAGVGSLGAVNLNIPAIIDRTVALMSDFSC 359

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYA------------RLS-KVGCDV--FWDDMGEQ 387
                     N+     V       +               L  K G +V   +     Q
Sbjct: 360 GANIDGKHYFNVNWERDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIF-----Q 414

Query: 388 IGSQFAVA 395
           +G +++ A
Sbjct: 415 LGKKYSEA 422



 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
           +AT +G DGK   + MG YGIG  RVVA+ IE  HD +  I   D +APF ++++ +   
Sbjct: 424 NATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R TG +E +S +++++  + +  N
Sbjct: 544 EYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|227890560|ref|ZP_04008365.1| threonyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|227867498|gb|EEJ74919.1| threonyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
          Length = 649

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 151/443 (34%), Gaps = 37/443 (8%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           L   +E   RD  +  ++L L    +  +   G+  W+P G      +   I +++   G
Sbjct: 235 LQRQKEARERDHRVIGNELDLF--FVDPKVGAGLPYWMPNGATIRRVIERYIIDKEVAWG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKS 124
              +  P L + +L+ +SG +D Y ++M    D  D  M    P +      ++  H +S
Sbjct: 293 FQHVYTPVLANLNLYKQSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYNHHKRS 352

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    ++ +  R E       +     +  +     + P+  +     +      +
Sbjct: 353 YRELPLRIAELGMMHRYEKSGALTGLSRVREMTLNDGHDFIEPDHIEDEIKTLIKLMTEV 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS-ENTDFDDII 243
           ++   +     R                  D   T+ +   D M     S      DD+ 
Sbjct: 413 YNDFDITDYRFRLS--------------YRDPKNTEKYFDDDEMWEKSQSKLKAAMDDMG 458

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    DV  +    +L   + +S   ++    F    ++       + 
Sbjct: 459 LEYFEAEGEAAFYGPKIDVQTKT---ALGGEETLSTIQLD----FLLPERFD----LKYI 507

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG++H    +    +  M    A +   + G    W          +  I   + +  
Sbjct: 508 GADGEEHRPVMVHRGIVSTMERFTAYLTEMYKGAFPTWLAPHQ-----VDIIPVKNDLHM 562

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D    + ++L   G  V  DD  E++G +   A +   P  +++G + VS+  V ++   
Sbjct: 563 DYVNDLSSKLRAHGIRVTVDDRNEKMGYKIRQAQVNKIPYTLVIGDEEVSNGTVTVRKYG 622

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 M+  E  N       N 
Sbjct: 623 EEKTNTMTKAEFKNLLFEDIENY 645


>gi|33862697|ref|NP_894257.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313]
 gi|73919817|sp|Q7V8D2|SYT_PROMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33634613|emb|CAE20599.1| Threonyl-tRNA synthatase [Prochlorococcus marinus str. MIT 9313]
          Length = 640

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 149/442 (33%), Gaps = 41/442 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD    + ++ L      + + G+  W   G      +   IRE  + 
Sbjct: 229 KAYLKRLEEAEKRDHRRIAKQMSLF--HTQEEAPGMIFWHAKGWAIYQVLEQYIRETLSL 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +    LW +SG ++ +  +M       ++     P +      IF   +K
Sbjct: 287 HDYQEIRTPQVVDRSLWEKSGHWEKFKDDMFTTT-SENREYAIKPMNCPCHVQIFNQGLK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F  T    +   +K      
Sbjct: 346 SYRDLPIRLAEFGSCLRNEPSGSLHGLMRVRNFVQDDAHIFC-TELQVQEEVSKFIDLVF 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G  S+ ++  + P     S E                   D    + +   D  
Sbjct: 405 EVYRSFGFDSVLIKLSTRPEKRVGSDE-----------------IWDKSEKALSDALDAK 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                ++    A Y    +     L D L    +     ++       G        A++
Sbjct: 448 GLAWDLLPGEGAFYGPKIEF---SLKDCLGRVWQCGTIQVDFSMPERLG--------ASY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D +      +    +G+      ++   + G+  IW   V    + + +  A     
Sbjct: 497 VAEDSQRRTPVMLHRAILGSFERFIGILIEHYAGRLPIWLAPVQVVVMGITDRNA----- 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             AC+ I  +LS +      D   E+IG +     L   P  +I+G K     +V ++ R
Sbjct: 552 -QACQDICKKLSALEYRTEVDLRNEKIGFKVREHTLQRVPFLIIIGDKEQQSGEVAVRTR 610

Query: 422 LTGIREDMSLEEVINYASHRFS 443
                  M L+   +      +
Sbjct: 611 EGKDFGSMPLKGFTSLLDEAIA 632


>gi|315186787|gb|EFU20545.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Spirochaeta
           thermophila DSM 6578]
          Length = 578

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 149/443 (33%), Gaps = 38/443 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L +    +   G+  W P G +    +    RE+    
Sbjct: 168 QYLEHLKEVEKRDHRRLGKELDLFSVH-EEAGPGLIYWHPKGARIRLEIENFWREQHLAR 226

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +  A LW  SG    Y + M    + +       P +      I+++ ++S
Sbjct: 227 GYEVLYTPHIGKAWLWETSGHLSFYKENMYAPMEVDKSDYYIKPMNCPFHIMIYKTRLRS 286

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  + ++   +R E      G++R R F   DA+ F  TPE  +    +     L 
Sbjct: 287 YRELPLRWAELGTVYRYERSGVLHGLLRVRGFTQDDAHIFC-TPEQIEDEILETLRFSLF 345

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   +     + P       E                   +    S     +   
Sbjct: 346 MWKTFGFSDVKAYLSTRPDKSVGEPE-----------------RWEQATESLRKAIEREG 388

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D+   K+ D+L    + S    +    F    ++      T+ 
Sbjct: 389 LDYEVDEGGGAFYGPKIDI---KVRDALGREWQTSTIQFD----FNLPERFD----ITYV 437

Query: 304 GADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            ADG+      +    +G++     ++   + G   +W   V    I +        V  
Sbjct: 438 DADGREKRPYMVHRALLGSLERFFGILVEHYGGAFPVWLAPVQVVVIPV------SDVFA 491

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++   L + G     D   +++ ++   A     P  VIVG +      V ++ R 
Sbjct: 492 GYAQEVVRALREAGVRAEADLSADRMNAKIRKAQQEKIPYAVIVGQREQEGRTVSVRVRG 551

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
              R  ++L + +   + R    
Sbjct: 552 GEQRNGVALGDFVEDVARRVHER 574


>gi|260220337|emb|CBA27773.1| Prolyl-tRNA synthetase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 580

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 119/237 (50%), Positives = 160/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++ +  L+E P DAE+ SHKLM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFLISTLKEAPTDAEVVSHKLMMRAGMIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+LW E+GR+D  G E+LR+ DR+++  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELTMPVIQPAELWQETGRFDKMGPELLRIKDRHERDYVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + +K SY  M  +
Sbjct: 121 EIKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQDSAKASYQVMAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE  +       D+    E  
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYCPT-SDYAANMEKA 236



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 75/188 (39%), Positives = 107/188 (56%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D+ P+ K V    RGIEVGH+FY GTKYS  M+ATF   +GK  +++MG 
Sbjct: 392 VADLRNVVEGDASPDGKGVLAIERGIEVGHVFYLGTKYSKAMNATFLDVNGKPQFMEMGC 451

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKV 375
           YGIG  R+ AA IE +HD KGIIWPD++APF + L  I        + A +K+Y  L   
Sbjct: 452 YGIGITRLPAAAIEQNHDDKGIIWPDALAPFTVVLCPINPDRFPDVKAAADKLYEELLSA 511

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G+ FA  +L+G P +V +G + + +  VE +HR       + + E+ 
Sbjct: 512 GVDVILDDRNERPGAMFADWELIGVPHRVNIGDRGLKEGVVEYQHRRESAATSVPVAEIA 571

Query: 436 NYASHRFS 443
           +    R  
Sbjct: 572 SLLLGRLK 579


>gi|295106076|emb|CBL03619.1| prolyl-tRNA synthetase, family II [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 585

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 113/255 (44%), Positives = 169/255 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E+P DAEIASHKL+LR GMI + + G+Y++LPLG++ L  V  I+REE
Sbjct: 7   MRMSELCVPTLKEDPTDAEIASHKLLLRAGMIRKTASGVYTFLPLGKRVLAKVERIVREE 66

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E+ +P LQ  +LW ESGR++ YG E++RL DR+D+    GPTHEE++T + R+
Sbjct: 67  MDAIGSQEIMMPALQPGELWHESGRWNDYGPELMRLVDRHDREFCLGPTHEELITALVRN 126

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP T YQIQ+KFRDE+RPRFG++RSREF+MKDAYSF  + E  + +Y+ M  +
Sbjct: 127 ELRSYKELPLTLYQIQVKFRDEIRPRFGLLRSREFIMKDAYSFHASQESLQKTYDDMSAA 186

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RI  R+ +   P+ A+SG IGG ++ EF+ LA+ GE ++            + +    
Sbjct: 187 YGRICERMDMDYRPVEADSGQIGGSVTCEFMALAEAGEAELVHCACGWAANAEAGDCLAR 246

Query: 241 DIISLNSIVEQWTAP 255
             +     +E+   P
Sbjct: 247 PTVYDVPAMEKVATP 261



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 77/191 (40%), Positives = 111/191 (58%), Gaps = 2/191 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+   +  DS P+       ARGIEV  +F  G KYS  M ATF   DG +    MG
Sbjct: 381 EWADLCIVQPGDSCPKCGLPLEGARGIEVSQVFQLGDKYSKAMGATFMAEDGSEQPFLMG 440

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG+G  R +AA++E  +D  GI WP SVAP  + ++ +   D   + A EK+   L+K+
Sbjct: 441 CYGVGVSRTMAAIVEQHNDENGIAWPFSVAPAHVCVLPLTVGDDEVQPAAEKLAGDLAKL 500

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G +FA ADL+G+PLQV+VG + +++ KVEIKHR TG R D+SL  + 
Sbjct: 501 GLEVVIDDRKERAGVKFADADLVGWPLQVVVGKRGLAEGKVEIKHRKTGARRDISLMALT 560

Query: 436 NYASHRFSNNR 446
           +  +    N +
Sbjct: 561 DAVAFAQRNTK 571


>gi|259418221|ref|ZP_05742139.1| threonyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
 gi|259345616|gb|EEW57460.1| threonyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
          Length = 648

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 150/444 (33%), Gaps = 45/444 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G+  W P G +    +   +R  Q++
Sbjct: 234 KAHLTMLEEAAKRDHRKLGREMHLF--HMQEEAPGMVFWHPNGWRIYTTLQDYMRRMQDK 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-----GPTHEEVMTDIF 118
            G +E++ P + +  LW  SG +D+Y + M  +    D A         P +      +F
Sbjct: 292 GGYVEVNTPQVVNRKLWEASGHWDNYQENMFIVEVDEDHAREKAVNALKPMNCPCHIQVF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D + F  T E  +    + 
Sbjct: 352 NQGLKSYRDLPLRMAEFGSCNRYEPSGAMHGIMRVRGFTQDDGHIFC-TEEQVEAETKEF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                +++  LG +   ++  + P     + E                   D    +   
Sbjct: 411 VSFLAKVYQDLGFEKWRVKLSTRPEKRVGTEE-----------------SWDQAEAALAA 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     + E   A Y    +     L D++  + +     I+              
Sbjct: 454 GIQAAGYEYELQEGEGAFYGPKLEF---VLTDAIGRDWQCGTLQIDPNLP--------ER 502

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G DG  H    +    +G+      ++   H GK   W         S+     
Sbjct: 503 LDATYIGQDGDKHRPLMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIT---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++ A L   G     D   E+I  +     +   P+ + VG + V +  V
Sbjct: 559 --SEADDYVNEVVATLRAAGVRAEADIRNEKINYKVREHSVGKVPVILAVGHREVEERTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYASH 440
            ++       +  SL  V    + 
Sbjct: 617 SVRRLGEKQTKVESLTNVTEELAK 640


>gi|309776920|ref|ZP_07671890.1| threonine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915331|gb|EFP61101.1| threonine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 580

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/434 (15%), Positives = 143/434 (32%), Gaps = 37/434 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD +    +L L   M+ +++ G+  +LP G    + +     EE  +     +  P
Sbjct: 180 AKKRDHKKLGRELGLF--MMSEYAPGMPFFLPNGMIIRNLLENFWYEEHTKENYQFIKTP 237

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + S +LW  SG +++Y + M      +D+     P +      +F++ + SY++LP   
Sbjct: 238 IMMSKELWEVSGHWENYKENMYTTM-VDDREFAIKPMNCPGSLLVFKNGLHSYKDLPLRM 296

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R E      G+ R R F   DA+ F    +       ++     R++   GL 
Sbjct: 297 GELGQVHRHEASGALNGLFRVRTFTQDDAHIFMRPDQIEGE-VMRLIQFIDRVYSVFGLS 355

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  + P                E +        +    +             +   
Sbjct: 356 YRI-ELSTRP----------------EKKYIGDLAIWEQSEKALADACVHAGKEYKVNPG 398

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    D H   + DSL    +     +++     F   Y     +           
Sbjct: 399 DGAFYGPKLDFH---IKDSLGREWQCGTIQLDMNLPERFDLTYVEKDGSKV-------RP 448

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +     G++     ++     G   +W          +  +  H +   +   ++  +
Sbjct: 449 VMLHRVIFGSIERFIGILIEHFAGHFPVWLA-----PQQVSVVPVHHEKHLEYANEVNEK 503

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L  +G     D   E++G +   A L   P Q+++G   + +  V ++   +     M L
Sbjct: 504 LLALGYRSKLDARNEKLGYRIREAQLSKIPYQLVIGDGEIENGSVTLRRAQSKKSLTMPL 563

Query: 432 EEVINYASHRFSNN 445
           E+ I   +      
Sbjct: 564 EDFIAMMNSAVEEK 577


>gi|166713436|ref|ZP_02244643.1| prolyl-tRNA synthetase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 564

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 117/250 (46%), Positives = 156/250 (62%), Gaps = 1/250 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +       D+    E     
Sbjct: 181 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAF-STGSDYAANVETASAA 239

Query: 241 DIISLNSIVE 250
                 +  E
Sbjct: 240 LPAPRAAASE 249



 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 1/176 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +       P       +  +   +    +   ARGIEVGH+F  G++Y+  + AT     
Sbjct: 370 NWGRDLPEPETVADVRNVVEGERAADGGELRLARGIEVGHVFQLGSQYAQALQATVIDEG 429

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDAC 365
           GK   ++MG YGIG  R+VAA IE +HD  GIIWP  +AP+++ +  I    D     A 
Sbjct: 430 GKVAVMKMGCYGIGISRIVAAAIEQNHDDAGIIWPAPMAPWQVVVCVINPKQDAQVVSAA 489

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           + +   L   G D   DD G + G+ FA  +LLG P +V+V  + ++    E + R
Sbjct: 490 QALLDELIAAGLDAALDDRGLRPGAMFADMELLGIPHRVVVSERGLAAGTFEYRAR 545


>gi|40063052|gb|AAR37908.1| prolyl-tRNA synthetase [uncultured marine bacterium 560]
          Length = 567

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 121/275 (44%), Positives = 173/275 (62%), Gaps = 3/275 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +P ++E P DA+I SH+LM+R G++ + + G+YS+LP+G + +  V  IIREE
Sbjct: 1   MKSSDLLIPTIKEAPNDAQIISHQLMIRAGLVSKLASGLYSYLPIGLRVIQKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++ A E+ +P  Q A+LW ESGR++ YG E+LR  DR+++    GPTHEEV+T+I + 
Sbjct: 61  MNKSLAQELLMPVAQPAELWQESGRWEEYGPELLRFKDRHERDFCLGPTHEEVITNIAKQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +       +Y  M  +
Sbjct: 121 YLRSYKQLPINFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHIDEASLGETYQVMHQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL+   + A+SG IGGD SHEF VLAD+GE  + C  +  D+    +  +  
Sbjct: 181 YCNIFDRLGLEYKVVLADSGAIGGDSSHEFHVLADSGEDAI-CFSNKSDYAANIDRAETL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE--KLFDSLPE 273
                    E  T          ++  +LFD  P+
Sbjct: 240 PQGEPEPPKETITVTETPDVKTIDDVCQLFDIKPK 274



 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 102/189 (53%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M+A   G DGK   + MG
Sbjct: 379 VVADLRNVVSGDPSPDGKGKLEIKRGIEVGHIFQLGTKYSDAMNANVIGEDGKAVNMNMG 438

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSK 374
            YGIG  R+VAA IE +HD KGII+P+S+APF++ ++ I        R   +++Y +   
Sbjct: 439 CYGIGVTRIVAASIEQNHDDKGIIFPESIAPFQLVIVPINYNKSSRVRKLADELYEQFLS 498

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  D+  E+ G  FA ++LLG P ++++         +E K R    + ++  +  
Sbjct: 499 QGVEVLLDNRKERPGIMFADSELLGIPHRLVISDTHADSGNIEYKSRNEVDKIEIEFKAA 558

Query: 435 INYASHRFS 443
           I++   + +
Sbjct: 559 IDFILAKLA 567


>gi|270290442|ref|ZP_06196667.1| threonyl-tRNA synthetase [Pediococcus acidilactici 7_4]
 gi|304384676|ref|ZP_07367022.1| threonine--tRNA ligase [Pediococcus acidilactici DSM 20284]
 gi|270281223|gb|EFA27056.1| threonyl-tRNA synthetase [Pediococcus acidilactici 7_4]
 gi|304328870|gb|EFL96090.1| threonine--tRNA ligase [Pediococcus acidilactici DSM 20284]
          Length = 647

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 149/439 (33%), Gaps = 38/439 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD  +  + L L    +  +   G+  W+P G      +   I +++ + G   + 
Sbjct: 238 EARERDHRVIGNDLDLF--FVDPEVGAGLPYWMPNGATIRRTIERYIIDKEVQHGYQHVY 295

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLP 129
            P L + D +  SG +  Y ++M    D  D  M    P +      +++ HI+SYR LP
Sbjct: 296 TPVLMNLDAYKTSGHWQHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSYRELP 355

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
               ++ +  R E       ++    +  +     + P+  +  + K+    + ++    
Sbjct: 356 LRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVAPDQIQEEFKKVLQLMVEVYRDFD 415

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISLNSI 248
           +     R                  D   T+ +   D M     S      DD+      
Sbjct: 416 ITDYTFRLS--------------YRDPENTEKYFDDDEMWNHSQSMLKAAMDDLGLDYVE 461

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    DV  +    +L   + +S   ++    F             + GADG+
Sbjct: 462 AEGEAAFYGPKLDVQTKT---ALGNEETLSTIQLD----FMLP----KQFDLHYVGADGE 510

Query: 309 DHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           +H   M   G+     R  A +IE                    +  I   D +  +  +
Sbjct: 511 EHRPVMIHRGLVSTMERFTAYLIEMYKGAFPTWLAP------KQVTIIPVKDDLHGEYAD 564

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+  +++     V  D   E++G +   A     P  ++VG   +  + V ++       
Sbjct: 565 KLREQMADQDIRVEVDHRNEKMGYKIREAQTQKIPYILVVGDNEMDSNAVSVRRYGEDDS 624

Query: 427 EDMSLEEVINYASHRFSNN 445
           + +S+++ +        + 
Sbjct: 625 QTVSVDQFMQDIKADIDSY 643


>gi|260425980|ref|ZP_05779959.1| threonyl-tRNA synthetase [Citreicella sp. SE45]
 gi|260420472|gb|EEX13723.1| threonyl-tRNA synthetase [Citreicella sp. SE45]
          Length = 649

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 146/443 (32%), Gaps = 44/443 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             KY   + +   RD      ++ L    +   + G   W P G     ++   +R  Q 
Sbjct: 233 LKKYLNFLEEAAKRDHRKLGREMDLF--HLQPEAPGQIFWHPNGWTVYTSLQDYMRRMQR 290

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDI 117
           + G +E++ P + +  LW ESG +++Y + M  +       R        P +      I
Sbjct: 291 KDGYVEVNTPQVVNRKLWEESGHWENYRENMFIVEVDEEGAREKTINALKPMNCPCHVQI 350

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F   +KSYR+LP    +     R E      G+MR R F   DA+ F  T +  +    K
Sbjct: 351 FNHGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIFC-TFDQIEEESKK 409

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                 +I+  LG  S  ++  + P     S E                   D    +  
Sbjct: 410 FIDFLAKIYADLGFDSWRVKLSTRPEKRVGSEE-----------------SWDSMEEALA 452

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                      I     A YA   +     L D++  + +     ++             
Sbjct: 453 NACKAAGREFEIFPGEGAFYAPKLEF---VLTDAIGRDWQCGTLQLDPNLP--------E 501

Query: 297 PMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A + G DG+ H    +    +G+      ++   H GK   W         S+    
Sbjct: 502 RLDANYVGQDGEKHRPIMLHRAVLGSFERFIGILIEEHSGKLPFWLAPRQVVVASIT--- 558

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D   +  A L   G     D   E+I  +     L   P+ + VG + V +  
Sbjct: 559 ---SEADDYVHEAVAALRAAGVRAEADVRNEKINYKVREHSLGKVPVILAVGHREVEERT 615

Query: 416 VEIKHRLTGIREDMSLEEVINYA 438
           V ++       +  SL+E+    
Sbjct: 616 VTVRRLGEKQTQVRSLDEIAAEL 638


>gi|255008477|ref|ZP_05280603.1| putative threonyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313146205|ref|ZP_07808398.1| threonine-tRNA ligase [Bacteroides fragilis 3_1_12]
 gi|313134972|gb|EFR52332.1| threonine-tRNA ligase [Bacteroides fragilis 3_1_12]
          Length = 646

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 147/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLALMEEAKKRDHRKIGKEMQLFM-FSDTVGKGLPMWLPKGTALRLRLQDFLRRIQTRY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L+V SG Y  YGK+  +        +     P +     +I+++  
Sbjct: 289 DYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEIYKNFP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKGE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +   +   +                  D    + +   D           +  +
Sbjct: 408 SIVFRSMDFTNFEAQISLR--------------DKVNREKYIGSDENWEKAEQAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLKAKIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFEL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G+D + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPEQVVILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  EK+   L         DD  E+IG +    ++   P  +IVG K   + +V ++
Sbjct: 557 KFNEYAEKVKTYLKTKEIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M  E+     +    N
Sbjct: 617 RQGEGDKGTMKFEDFGEILNEEVQN 641


>gi|145637732|ref|ZP_01793384.1| prolyl-tRNA synthetase [Haemophilus influenzae PittHH]
 gi|145269081|gb|EDK09032.1| prolyl-tRNA synthetase [Haemophilus influenzae PittHH]
          Length = 572

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 145/428 (33%), Positives = 203/428 (47%), Gaps = 39/428 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E     
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAI 239

Query: 236 -------------NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                          D  +  ++  +VEQ+  P   T      K  D       +  RG 
Sbjct: 240 AIGERQAPTAEMCLVDTPNAKTIAELVEQFNLPIEKTVKTLIVKGADENQPLVALIIRGD 299

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
              +         +     F         +  G   +G + +    I          +  
Sbjct: 300 HELNEIKAQKHPLVADPLEFADETEIKAKIGAGVGSLGPVNLNIPAIIDRTVALMSDFSC 359

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYA------------RLS-KVGCDV--FWDDMGEQ 387
                     N+     V       +               L  K G +V   +     Q
Sbjct: 360 GANIDGKHYFNVNWERDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIF-----Q 414

Query: 388 IGSQFAVA 395
           +G +++ A
Sbjct: 415 LGKKYSEA 422



 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 110/208 (52%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +  I   D +APF ++++ +   
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R TG +E +S +++++  + +  N
Sbjct: 544 EYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|319788022|ref|YP_004147497.1| prolyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466534|gb|ADV28266.1| prolyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
          Length = 565

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 116/251 (46%), Positives = 160/251 (63%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SHKLMLR GMI + + G+Y+W PLG + L  V A++REE
Sbjct: 1   MRLSRFHLHTTKETPADAELVSHKLMLRAGMIRKLAAGLYTWTPLGLRVLRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +PT+Q  +LW E+GR+  +G ++L++ DR +    + PT EE +TD  R 
Sbjct: 61  MNRAGAVELQLPTIQPRELWEETGRWGKFGGQLLKIKDRKEAEYCFSPTAEEAITDFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQI  KFRDE+RPRFGVMR+REFLMKDAYSF ++ E     Y  M  +
Sbjct: 121 ELSSYKQLPVNFYQIHTKFRDEIRPRFGVMRAREFLMKDAYSFHVSDEDLAREYENMKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+R+F RLGL+   ++A+SG IGGD S EF VLAD+GE  +       D+    E     
Sbjct: 181 YIRVFGRLGLEFRAVQADSGAIGGDASQEFHVLADSGEDALAF-STASDYAANVETAQAA 239

Query: 241 DIISLNSIVEQ 251
                 +  E+
Sbjct: 240 APGPRPAATEE 250



 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 91/185 (49%), Gaps = 2/185 (1%)

Query: 258 ATSDVHNEKLFDSLPENKRV-SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             +D+ N    D   +   +  ARGIEVGH+F  G KYS  M  T    +GK     MG 
Sbjct: 380 VVADIRNVVAGDRAADGGEIRLARGIEVGHVFQLGRKYSQAMGFTVLDENGKAVVPAMGC 439

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+VAA IE +HD  GI+WP  +AP+ +++  I    D    +A E +   L   
Sbjct: 440 YGIGVSRIVAAAIEQNHDEAGIVWPVPMAPWTVAVCVINPKKDAQVDEAAESLLVELQAA 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G D   DD G + G  FA  +L+G P +V+V ++ +     E + R  G  E +   +++
Sbjct: 500 GIDAVLDDRGLRPGPMFADMELIGIPHRVVVSARGLEAGTYEYRARSGGEAEALDRAQLL 559

Query: 436 NYASH 440
                
Sbjct: 560 ERLRQ 564


>gi|299144001|ref|ZP_07037081.1| threonine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518486|gb|EFI42225.1| threonine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 639

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 153/443 (34%), Gaps = 41/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L T  +H    G   + P G    + +    R      
Sbjct: 232 EYIERIEEAEKRDHRKLGRELDLFT--MHDEGPGFPFFHPNGMILRNELLGWWRNVLIEN 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +  LW  SG +D Y + M      + +     P +    T ++ ++  S
Sbjct: 290 GYGEIQTPIILNEALWHRSGHWDHYKENM-YFTKIDGEDYAVKPMNCPGSTIVYSTNPHS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +     R EL     G+ R R F   DA+ + L P   +    KM      
Sbjct: 349 YRELPIRLSEFGQVHRHELSGALHGLFRVRTFTQDDAHVYCL-PSQIEEEVFKMIDLADY 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G K   +   + P       +F+   +T            +    S     +   
Sbjct: 408 LYSTFGFKYS-VELSTRP------EDFMGDIET-----------WNKAEESLKVALEKKN 449

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              SI E   A Y    D H E   D++    +     ++      F          T+ 
Sbjct: 450 IKYSINEGDGAFYGPKIDFHLE---DAIGRTWQCGTIQLDFQMPVNFD--------LTYI 498

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              G+    V +    +G++     ++     GK  +W           + I    +   
Sbjct: 499 NEKGEKARPVMLHRALLGSVERFMGILIEHFAGKFPLW------LSPIQVEIIPVSEKFA 552

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  +++  +L   G  V+ D+  E++G +   A L      ++VG + V+  K+ ++ R 
Sbjct: 553 EFAKELEIKLKNTGLKVYLDERAEKVGYKIREAQLKKINYMLVVGEQEVNSGKLSVRKRN 612

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
               +D  +EE IN       + 
Sbjct: 613 GEEIKDCEVEEFINILKSEIESK 635


>gi|152976185|ref|YP_001375702.1| prolyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189083487|sp|A7GRE9|SYP_BACCN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152024937|gb|ABS22707.1| prolyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 566

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 129/282 (45%), Positives = 172/282 (60%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LPLG K L  V  IIREE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPLGLKVLHKVEHIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P LQ+A+LW ESGR+ SYG E++R+ DRND+    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPALQAAELWQESGRWYSYGSELMRMKDRNDREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+++F +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              + +   E+     A       E++   L        + +
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEVSAFLNIEPSQCIKTM 281



 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/186 (38%), Positives = 104/186 (55%), Gaps = 3/186 (1%)

Query: 260 SDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   +  D  P+ K      RGIEVGH+F  GT+YS  M+ATF   +GK   + MG Y
Sbjct: 382 ADLRFIQEGDQSPDGKGTIRFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLIMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R VAA+ E  +D  G++WP +VAPF + +I +     V R+  E IY  L + G 
Sbjct: 442 GIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDVQREVAENIYTSLQEQGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R T    ++ +E++  Y
Sbjct: 502 EVLLDDRTERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATNESAEVKVEDLHTY 560

Query: 438 ASHRFS 443
            +    
Sbjct: 561 IADILK 566


>gi|312134482|ref|YP_004001820.1| prolyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
 gi|311774533|gb|ADQ04020.1| prolyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
          Length = 572

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 124/282 (43%), Positives = 168/282 (59%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P DAEI SHKLMLR+G + Q S GIY +LPLG + L  +  I+REE
Sbjct: 1   MKVSELFMPTLKETPSDAEIESHKLMLRSGFMRQLSSGIYVYLPLGYRVLRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW ESGR+  +G EM R+ DRN++    GPTHEE  T I R+
Sbjct: 61  MDRSGAQELHMSALMPKELWEESGRWAVFGPEMFRIKDRNEREYCLGPTHEEAFTYIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ KFRDE RPRFGVMR REF MKDAYSFD+  +G   SY KM+ +
Sbjct: 121 EITSYRELPKILYQIQTKFRDERRPRFGVMRCREFTMKDAYSFDIDEKGLDISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF R GL    + A++G +GG  SHEF+V +  GE ++   K    +    E  +  
Sbjct: 181 YVRIFKRCGLDVKIVEADTGAMGGASSHEFMVPSSVGEAEIAYCKAC-GYAANLEKAECL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           D    N+   +        +    E+L + L  +     + +
Sbjct: 240 DTPVENNEKPKEKQEVYTPNVKTIEELVNFLGIDSTRFVKTM 281



 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 68/194 (35%), Positives = 102/194 (52%), Gaps = 4/194 (2%)

Query: 256 YAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
               +D+ N    D  P+    K    RGIEVGHIF  GTKY+      +    G+   +
Sbjct: 375 VTKFADLRNITQDDLCPKCRSQKVTIERGIEVGHIFKLGTKYTEAFGCVYTDEKGEKKLM 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R  AA+IE  HD  GIIWP +VAP+++ ++ +   D+       +IY  L
Sbjct: 435 IMGCYGIGINRTAAAIIEQMHDEDGIIWPITVAPYEVIVVPVNIKDENQHKIAFEIYENL 494

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K G +V  DD  E+ G +F  ADL+G P +V VG K VS+ K+EI++R T    ++ ++
Sbjct: 495 QKNGIEVLIDDRDERAGVKFKDADLIGIPFRVTVGKK-VSEGKLEIRNRRTKETFEVEID 553

Query: 433 EVINYASHRFSNNR 446
             + +  +     +
Sbjct: 554 NAVEFIMNLIKQEK 567


>gi|312876378|ref|ZP_07736363.1| threonyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796872|gb|EFR13216.1| threonyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 647

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 160/443 (36%), Gaps = 33/443 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L + T       +G+   +P G K L  +   + +E+ + 
Sbjct: 233 EYLKKLEEAKKRDHNRIGRELEIFTT-SEVVGQGLPLLMPKGAKILQILQRFVEDEEEKR 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +    P +  +DL+  SG +D Y   M  + +  ++ +   P        I+ S  +S
Sbjct: 292 GYLLTKTPYMAKSDLYKISGHWDHYRDGMFVIEEDENEVLALRPMTCPFQFLIYNSKQRS 351

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + +    FR+E      G++R R+F + DA+     P+  +  +  +      
Sbjct: 352 YRDLPIRYSETSTLFRNESSGEMHGLIRVRQFTLSDAHIICR-PDQVEEEFKGVLDLIQY 410

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I   LG            I  D+ + F       + +   + +  +          D + 
Sbjct: 411 IMKTLG------------IENDIWYRFSRWDPNNKEKYIDNPEAWEKTENDMKNILDKLG 458

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 +   A Y    D+  + ++    +   +    I+           +     T+ 
Sbjct: 459 INYKEAKGEAAFYGPKLDIQFKNVY---GKEDTIITVQIDFAL--------AERFDMTYV 507

Query: 304 GADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG+     +     IG      A++    +     +P  ++P +I +I +  +     
Sbjct: 508 DRDGQKKRPIIIHRSSIGCYERTLAMLI---EKYNGAFPLWLSPVQIRVIPVSDN---FN 561

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  + +   L + G  V  D   E +G +   A L   P  VIVG K   ++ V ++ R 
Sbjct: 562 EYAKNVARILKENGFRVEEDYRSETVGYKIRDAQLQKIPYMVIVGEKEQKENTVAVRDRK 621

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G     ++E+ I     +    
Sbjct: 622 KGDLGSFTIEDFIAMVKEKVDKK 644


>gi|296329234|ref|ZP_06871735.1| proline--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296153590|gb|EFG94407.1| proline--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 567

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 121/251 (48%), Positives = 164/251 (65%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  IIREE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIRKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIIRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S    ++    E    +
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD-GSEYAANIEKAVSE 239

Query: 241 DIISLNSIVEQ 251
            I      +++
Sbjct: 240 LINPPKEELKE 250



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 74/184 (40%), Positives = 102/184 (55%), Gaps = 2/184 (1%)

Query: 261 DVHNEKLFDSLP-ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           D+   ++ D+     K  SARGIE G IF  G KYS  M+AT+    GK  ++ MG YGI
Sbjct: 383 DIRKVRVGDNCITGGKLHSARGIECGQIFKLGDKYSKAMNATYLDEKGKTQFMLMGCYGI 442

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R +AA IE ++D  GIIWP S+AP+ + +I     ++V     EKIY  L +   DV
Sbjct: 443 GVTRTMAASIEQNNDENGIIWPVSIAPYIVDVIPANIKNEVQVSLAEKIYNELQEEKIDV 502

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E+ G +F  ADL+GFP +V+VG +   +  VE+K R TG   ++S  EVI    
Sbjct: 503 MLDDRDEKPGFKFKDADLIGFPFKVVVGKR-ADEGIVELKIRRTGETLEVSQNEVIAKIK 561

Query: 440 HRFS 443
               
Sbjct: 562 ELMR 565


>gi|94495624|ref|ZP_01302204.1| threonyl-tRNA synthetase [Sphingomonas sp. SKA58]
 gi|94425012|gb|EAT10033.1| threonyl-tRNA synthetase [Sphingomonas sp. SKA58]
          Length = 665

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 85/454 (18%), Positives = 153/454 (33%), Gaps = 48/454 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++   + +   RD      ++ L    + Q + G   W P G     N+ A +R   +
Sbjct: 238 LAEHLTRLEEAGKRDHRKLGAEMDLF--HLQQEAHGSVFWHPKGYVIWRNLEAYMRRAID 295

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-------------AMIYGPT 109
             G  E+  P +  A  W +SG +  Y + M  + D                  M   P 
Sbjct: 296 DAGYREVKTPQVMDARQWEQSGHWGKYRENMFVIPDEVPNVEDEGPLVSDDADWMALKPM 355

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPE 168
           +      IFR  IKSYR+LP  FY+     R+E      G+MR R+F   DA+ F    +
Sbjct: 356 NCPAHVLIFRQGIKSYRDLPLRFYENGCCHRNEPHGALHGLMRVRQFTQDDAHIFCREDQ 415

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             +           RI+   G      +    P     + E    A+          + +
Sbjct: 416 IVEE-VRAFCALADRIYKDFGFTYSI-KLALRPEKRFGTEEMWDKAE----------EEL 463

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
              + +   +  D       +    A YA   + H   L D++    +V     +     
Sbjct: 464 RNAVAAAGLNTPDYG--WEELPGEGAFYAPKLEWH---LTDAIGRTWQVGTIQSDRVLP- 517

Query: 289 YFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                    + A++ G DG+ H    +     G+      ++   + GK  +W   V   
Sbjct: 518 -------ERLDASYIGEDGERHRPVMLHRAIFGSYERFIGILIEHYAGKFPLWLAPVQAV 570

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
             +++          D  +    RL   G     D   E+I  +     L   P  ++VG
Sbjct: 571 VATIV------SDADDYAKATVDRLRAAGIRAELDTRNEKINYKVREHSLAKVPNLLVVG 624

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +   +  V ++      +  +SL++VI      
Sbjct: 625 RREADEGTVALRELGKDGQSVLSLDDVIARLEKE 658


>gi|320352952|ref|YP_004194291.1| prolyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032]
 gi|320121454|gb|ADW17000.1| prolyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032]
          Length = 570

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 118/236 (50%), Positives = 158/236 (66%), Gaps = 1/236 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  LP  +E P +AE+ SH+L++R G I + + G+Y++LP+G  AL  V  I+R+E
Sbjct: 1   MRYSQMLLPTTKETPSEAEVVSHQLLVRGGFIRKLTSGMYTYLPMGFLALQKVTEIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q  DLW ESGR+  YG E+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAQEILMPMVQPGDLWEESGRWKKYGPELLRFRDRHDRDYCLGPTHEEVVTDVARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  SY  M  +
Sbjct: 121 ELQSYRQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDVDDAGASRSYEIMRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL+   + A+SG IGG  SHEF+VLA+TGE  +   +    +    E 
Sbjct: 181 YHRIFERCGLEFRAVEADSGAIGGSFSHEFMVLAETGEDTLVICESCS-YAANVEK 235



 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 82/184 (44%), Positives = 108/184 (58%), Gaps = 2/184 (1%)

Query: 261 DVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+    + D  P          GIEVGHIF  GTKYS  M A F+ +DG++    MG YG
Sbjct: 382 DLRQITVNDRCPVCGGGLRLKEGIEVGHIFKLGTKYSEAMKANFQDSDGQEKPFVMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  RVVAA IE +HD KGII+P  +APF++ ++N+   D+    A E +Y +L   G D
Sbjct: 442 IGVSRVVAAAIEQNHDAKGIIFPVPLAPFQVIVLNLGPKDEGYCTAAEDLYTQLRAQGLD 501

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ GS+FA ADLLG P ++ VG  F  + KVEI+ R TG  + +SLEE   Y 
Sbjct: 502 VLLDDRDERPGSKFADADLLGIPYRLTVGKTFEKEGKVEIRSRKTGETQVLSLEEATAYL 561

Query: 439 SHRF 442
           + R 
Sbjct: 562 AERV 565


>gi|295696152|ref|YP_003589390.1| prolyl-tRNA synthetase [Bacillus tusciae DSM 2912]
 gi|295411754|gb|ADG06246.1| prolyl-tRNA synthetase [Bacillus tusciae DSM 2912]
          Length = 567

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 130/266 (48%), Positives = 178/266 (66%), Gaps = 6/266 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+  L+E P +AE+ SH+LMLR GMI Q   G+YS+LPLG + L  + AI+REE
Sbjct: 1   MRQSHFFVQTLREVPAEAEVPSHRLMLRAGMIRQVVSGVYSYLPLGYRVLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q A LW ESGR+D YGKE+LR  DR+ + ++ GPTHEEV+TD+ R+
Sbjct: 61  MDRAGAQEVLLPAVQPASLWQESGRWDDYGKELLRFEDRHQRMLVLGPTHEEVITDLVRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP T YQIQ KFRDE+RPRFGVMR+REF+MKDAYSFD+  EG   SY  M+ +
Sbjct: 121 EVRSYRQLPMTLYQIQTKFRDEVRPRFGVMRAREFIMKDAYSFDVDEEGLDRSYRAMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCSKDFMDFPIPSE---- 235
           Y +IF R GL+   ++A+ G IGG+  SHEF+VL++ GE  +       D+    E    
Sbjct: 181 YEQIFRRCGLEFRVVQADPGAIGGEGGSHEFMVLSEVGEDTILVCPAC-DYAANVELASG 239

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSD 261
               +D     S  E++  P A T +
Sbjct: 240 KVAGEDGRRSVSEKERFLTPGAKTIE 265



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 73/186 (39%), Positives = 103/186 (55%), Gaps = 3/186 (1%)

Query: 261 DVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   +  D            RGIEVGH+F  GTKYS  +SA+F    G    V MG YG
Sbjct: 382 DIRTARAGDRCVRCGAPLEEYRGIEVGHVFKLGTKYSEALSASFLDERGVQRPVIMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R++AA +E  HD KGI+WP  +APF + ++ +   D   RDA E++  RL   G +
Sbjct: 442 IGVSRLIAAAVEQHHDDKGIMWPMPIAPFHVHVLPVNLKDAAQRDAAEQLCTRLEDAGIE 501

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +F  ADL+G P+Q+IVG + +S+  VE+K R TG    +S +E +  A
Sbjct: 502 VLLDDRDERPGVKFNDADLMGIPIQLIVGKR-ISEGLVEMKRRKTGEVTLLSPDEAVRAA 560

Query: 439 SHRFSN 444
                +
Sbjct: 561 VEAVRS 566


>gi|229086371|ref|ZP_04218548.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-44]
 gi|228696983|gb|EEL49791.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-44]
          Length = 566

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 125/267 (46%), Positives = 169/267 (63%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LPLG K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPLGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P LQ+A+LW ESGR+ SYG E++R+ DRND+    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPALQAAELWQESGRWYSYGSELMRMKDRNDREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSRLYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+ L+D GE  +  S    D+    E     
Sbjct: 181 YSNIFSRCGLNFRAVIADSGAMGGKDTHEFMALSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + ++  E+     A       E++
Sbjct: 240 ASYTKSNEAEKALEKVATPDQKAIEEV 266



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 105/190 (55%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+        RGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTIRFARGIEVGHVFKLGTRYSEAMNATFLDENGKMKPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY+ L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREVGETIYSSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R T    ++ +EE
Sbjct: 498 EQGYEVLLDDRTERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATNESAEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LHTYIANILK 566


>gi|78037678|emb|CAJ25423.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 621

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 155/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 58  MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 117

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 118 MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 177

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 178 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 237

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +       D+    E
Sbjct: 238 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAF-STGSDYAANVE 291



 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 1/193 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +       P       +  +   +    +   ARGIEVGH+F  G++Y+  + AT     
Sbjct: 427 NWGRDLPEPETVADVRNVVEGERAADGGELRLARGIEVGHVFQLGSQYAQALQATVIDEG 486

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDAC 365
           GK   ++MG YGIG  R+VAA IE +HD  GIIWP  +AP+++ +  I    D     A 
Sbjct: 487 GKAAVMKMGCYGIGISRIVAAAIEQNHDDAGIIWPAPMAPWQVVVCVINPKQDPQVLAAA 546

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +  +L   G D   DD G + G+ FA  +LLG P +V+V  + ++    E + R    
Sbjct: 547 QALLDQLLAAGLDAALDDRGLRPGAMFADMELLGIPHRVVVSERGLAAGTFEYRARTADA 606

Query: 426 REDMSLEEVINYA 438
            E +    + +  
Sbjct: 607 AESLDKAALFSRL 619


>gi|52078698|ref|YP_077489.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52784060|ref|YP_089889.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52001909|gb|AAU21851.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52346562|gb|AAU39196.1| ThrZ [Bacillus licheniformis ATCC 14580]
          Length = 639

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 162/445 (36%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + Q    D      +L L   M  + + G+  +LP GQ     +  + RE QN
Sbjct: 232 LNEYLYFLEQAAKHDHRQLGKQLDLF--MFSEEAPGMPFYLPKGQIVRKELEKLSRELQN 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + +  LW +SG +D Y + M   ++ ++      P +      IF++++
Sbjct: 290 NASYDEVHTPFMMNYRLWEKSGHWDHYQENM-YFSEVDNTKFAIKPMNCPGHMLIFKNNL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    +     R E      G++R R F   DA+ F    +       K+F   
Sbjct: 349 YSYRDLPIRLAEYGQVHRHEFSGSLNGLLRVRTFCQDDAHIFVREDQIESE-IKKVFHLI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +++  +G                   E+ V   T       +    +    S     DD
Sbjct: 408 DQVYRTIG------------------FEYSVELSTRPDDSLGNNHLWEVSEGSLKNVLDD 449

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     + E   A Y    D H   + D+L  + +     ++    F    K+      T
Sbjct: 450 LAIKYQVNEGDGAFYGPKIDFH---IKDALKRSHQCGTIQLD----FQMPEKFD----LT 498

Query: 302 FKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   + +    V +     G++     ++     G   +W   +    I + +I      
Sbjct: 499 YINHNNEKVRPVVIHRAIFGSIDRFFGILIEHFAGVFPVWLAPIQVQIIPISHI------ 552

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             + C  I + L + G  V  ++  +++G +   A +   P  ++VG   + ++ V ++ 
Sbjct: 553 HLEYCLGIKSELKQHGIRVQINESNQKLGYKIREAQVQKIPYTLVVGDNEIKENGVNVRK 612

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                ++++S+E        +    
Sbjct: 613 YGEEQQKNVSIESFKKNILQQIKTR 637


>gi|237815491|ref|ZP_04594489.1| threonyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|237790328|gb|EEP64538.1| threonyl-tRNA synthetase [Brucella abortus str. 2308 A]
          Length = 693

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 153/445 (34%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 268 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 325

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 326 HGYQEVNTPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 385

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +    +  
Sbjct: 386 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLHIN 445

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 446 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 492

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 493 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 543

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 544 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 597

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 598 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 655

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 656 NMRRLGSRDQESMTLDEAIARLCEE 680


>gi|163868456|ref|YP_001609665.1| threonyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
 gi|189083598|sp|A9IVB0|SYT_BART1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161018112|emb|CAK01670.1| Threonyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
          Length = 658

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 155/445 (34%), Gaps = 39/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L      +   G+  W   G K   N+   +R   + 
Sbjct: 233 KAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGMIFWHQKGWKMFQNLINYMRRRLDD 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-----NDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y + M +         ++      P +      IF
Sbjct: 291 HQYAEVNAPQVLDRSLWEISGHWGWYKENMFKAIPAAEDLDHEHIYALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  L  R E      G+MR R F   DA+ F    + +    +  
Sbjct: 351 KHGLKSYRDLPIRLAEFGLVHRYEPSGSLHGLMRVRSFTQDDAHIFCTDEQLAAECLSIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G K I ++  + P     S      A++           M+  + +  T
Sbjct: 411 -DLILSTYADFGFKEISLKLSTRPEKRVGSDALWDHAES----------IMESVLKTIET 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            F   I   SI+    A Y    +     L D++    +     ++      FG      
Sbjct: 460 KFAGQIK-TSILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQLDFNLPERFG------ 509

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   D +      +     G+M     ++  +  G   +W         ++     
Sbjct: 510 --AFYIDKDSEKRQPVMIHRAIFGSMERFLGILIENFAGHMPLWLAPEQIVVATIT---- 563

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  +KI ARL  VG     D   E+I  +     L   P+ ++ G +    + V
Sbjct: 564 --SEANEYAQKITARLKAVGLSATTDLRNEKINYKIREHSLQKVPVILVCGKREAETNSV 621

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +  +S+E+ I   S+ 
Sbjct: 622 NMRRLGSPNQTLLSVEDAIKQLSNE 646


>gi|325928567|ref|ZP_08189755.1| prolyl-tRNA synthetase, family II [Xanthomonas perforans 91-118]
 gi|325541106|gb|EGD12660.1| prolyl-tRNA synthetase, family II [Xanthomonas perforans 91-118]
          Length = 564

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 155/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +       D+    E
Sbjct: 181 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAF-STGSDYAANVE 234



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 1/194 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +       P       +  +   +    +   ARGIEVGH+F  G++Y+  + AT     
Sbjct: 370 NWGRDLPEPETVADVRNVVEGERAADGGELRLARGIEVGHVFQLGSQYAQALQATVIDEG 429

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDAC 365
           GK   ++MG YGIG  R+VAA IE +HD  GIIWP  +AP+++ +  I    D     A 
Sbjct: 430 GKAAVMKMGCYGIGISRIVAAAIEQNHDDAGIIWPAPMAPWQVVVCVINPKQDPQVLAAA 489

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +  +L   G D   DD G + G+ FA  +LLG P +V+V  + ++    E + R    
Sbjct: 490 QALLDQLLAAGLDAALDDRGLRPGAMFADMELLGIPHRVVVSERGLAAGTFEYRARTADA 549

Query: 426 REDMSLEEVINYAS 439
            E +    + +  +
Sbjct: 550 AESLDKAALFSRLA 563


>gi|326317187|ref|YP_004234859.1| threonyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374023|gb|ADX46292.1| threonyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 639

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 146/444 (32%), Gaps = 37/444 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + ++  ++E   RD      +L L    I +HS G   W P G      V   +R+    
Sbjct: 229 EAYIKRIEEAEKRDHRRLGRELDLF--HIDEHSPGTVFWHPKGWTIWQGVEQYMRQVYRD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +D Y + M    +         P +      IF   +K
Sbjct: 287 NGYQEVKGPQILDKHLWEKTGHWDKYRENMFT-TESEKHDYALKPMNCPGHILIFNQGVK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F   D + F    +  +   N       
Sbjct: 346 SYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRAFTQDDGHIFCTEDQIQQECINFT-SLLQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   I  +  + P     S E                   D    +        
Sbjct: 405 KVYKDFGFTDIIYKVATRPEKRIGSEE-----------------SWDKAENALIESLKAS 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I     A Y    +     L D++  + +     ++       G        A +
Sbjct: 448 GCDYQIAVGDGAFYGPKLEY---TLRDAIGRHWQCGTIQVDPSMPERLG--------AEY 496

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG+ H   +     +G++     ++   H G   +W          L    A D  C
Sbjct: 497 VGEDGQRHRPIVLHRAIVGSLERFIGILIEQHAGALPVWL--APVQVAVLNITGAQDDYC 554

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           R+   K+   L   G  V  D   E+I  +     L   P  ++VG K  +   V ++ R
Sbjct: 555 REIAAKLQKALPNQGLRVELDLRNEKITYKIREHSLQKLPYILVVGDKEKAAGAVAVRAR 614

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M LE  I+      ++ 
Sbjct: 615 GNRDLGVMPLEAFISLIGQDIADK 638


>gi|254706742|ref|ZP_05168570.1| threonyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261314206|ref|ZP_05953403.1| threonyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261303232|gb|EEY06729.1| threonyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
          Length = 658

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 151/445 (33%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 233 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D      P +      IF
Sbjct: 291 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDCVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLRIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 411 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 457

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 458 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 508

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 509 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 562

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 563 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 620

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 621 NMRRLGSRDQESMTLDEAIARLCEE 645


>gi|212639527|ref|YP_002316047.1| prolyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
 gi|212561007|gb|ACJ34062.1| Prolyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
          Length = 568

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 127/281 (45%), Positives = 179/281 (63%), Gaps = 7/281 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F+P L+E P DAEI SH+L+LR G I Q++ G+YS+LPLG++ L  + AIIREE
Sbjct: 5   MKQSMSFIPTLREVPADAEIKSHQLLLRAGFIRQNASGVYSFLPLGKRVLQKIEAIIREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P LQ A+LW ESGR+ SYG E++RL DR+++    G THEEV+T + R 
Sbjct: 65  MERAGAVELLMPALQQAELWQESGRWYSYGPELMRLKDRHERDFALGATHEEVITALVRD 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E     YNKM+ +
Sbjct: 125 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASHESLDEVYNKMYEA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN---- 236
           Y  +F R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 185 YANVFRRCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDS-SDYAANIEMAPVI 243

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           T ++     ++ +E+   P   T +      F  +P+ K +
Sbjct: 244 TTYERSDEPHAPLEKVHTPEQRTIE--EVSQFLQVPKEKCI 282



 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSL 296
            ++       V       A  +DV   +  D  P+ K      RGIEVGH+F  GT+YS 
Sbjct: 364 ANEAHYHYKGVNPDRDFVAQYADVRFIQEGDPSPDGKGTIRFARGIEVGHVFKLGTRYSE 423

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            M+AT+   +G+   + MG YGIG  R +AA+ E  +D  G+IWP +VAPF + LI++  
Sbjct: 424 AMNATYLDENGRTQPMIMGCYGIGVSRTLAAIAEQYNDEHGLIWPTAVAPFHVHLISVNP 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                R+  ++ Y +L + G +V +DD  E+ G +FA +DL+G P++V VG +  S+  V
Sbjct: 484 KVDEQRELADEWYVQLQQEGFEVLYDDRAERPGVKFADSDLIGLPVRVTVGKR-ASEGIV 542

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
           E+K R TG  E++ + +++       
Sbjct: 543 EVKVRKTGETEEVHVSQLVETLRRYL 568


>gi|162138530|ref|YP_365423.2| prolyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|114152278|sp|Q3BP90|SYP_XANC5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 564

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 155/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +       D+    E
Sbjct: 181 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAF-STGSDYAANVE 234



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 1/193 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +       P       +  +   +    +   ARGIEVGH+F  G++Y+  + AT     
Sbjct: 370 NWGRDLPEPETVADVRNVVEGERAADGGELRLARGIEVGHVFQLGSQYAQALQATVIDEG 429

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDAC 365
           GK   ++MG YGIG  R+VAA IE +HD  GIIWP  +AP+++ +  I    D     A 
Sbjct: 430 GKAAVMKMGCYGIGISRIVAAAIEQNHDDAGIIWPAPMAPWQVVVCVINPKQDPQVLAAA 489

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +  +L   G D   DD G + G+ FA  +LLG P +V+V  + ++    E + R    
Sbjct: 490 QALLDQLLAAGLDAALDDRGLRPGAMFADMELLGIPHRVVVSERGLAAGTFEYRARTADA 549

Query: 426 REDMSLEEVINYA 438
            E +    + +  
Sbjct: 550 AESLDKAALFSRL 562


>gi|78042796|ref|YP_360595.1| prolyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
 gi|114152179|sp|Q3AB89|SYP_CARHZ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|77994911|gb|ABB13810.1| prolyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 569

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 123/272 (45%), Positives = 177/272 (65%), Gaps = 4/272 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P L+ENP +AE+ SHKL+LR G I + + G+Y++LPL Q+ L  +  IIREE
Sbjct: 1   MRLSQYFMPTLRENPAEAEVISHKLLLRAGFIRKSASGVYTYLPLAQRVLKKIMQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P LQ A+LW+E+GR+  YG E+ +L DR+++    GPTHEE++TD+ R 
Sbjct: 61  MDRQGGQELMLPILQPAELWLETGRWHVYGPELFKLKDRHNRDFCLGPTHEEIITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE RPRFG+MR REF+MKD YSFD   EG + SY KM+ +
Sbjct: 121 EVRSYKELPLLLYQIQNKYRDEKRPRFGLMRGREFIMKDLYSFDRDEEGLEISYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIP---SEN 236
           Y  +F R GLK   + A++G IGG  +HEF+VLA++GE   V+C  D   +      +E 
Sbjct: 181 YTNVFTRCGLKFRAVEADAGAIGGSTTHEFMVLANSGEAVVVYCPDDNCGYAANLEKAET 240

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
               ++I   + +++   P   T D   E L 
Sbjct: 241 KFTPEVIGTPAEIQKVATPNVKTVDEVAEFLK 272



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 2/197 (1%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           E+  +P    +D+   +  +  P+     V ARGIEVG IF    KYS  M A +   +G
Sbjct: 372 ERDFSPAVKYADIRLVEEGEPCPKCGKALVFARGIEVGQIFKLKDKYSRKMGAFYLDENG 431

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +   + MG YGIG  R +AA +E +HD  GIIWP ++APF++ ++ +   D+      E+
Sbjct: 432 QQKPIIMGCYGIGVTRTMAAAVEQNHDEDGIIWPAAIAPFEVIVVPVSNKDEQQMKMAEE 491

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y  L   G +V  DD  E+ G +F  ADL+G PL++ VG + VS+   E+K R T   +
Sbjct: 492 VYNLLLNAGFEVVIDDRDERPGVKFKDADLIGIPLRITVGKRTVSEGVYEVKIRRTREEK 551

Query: 428 DMSLEEVINYASHRFSN 444
               EE+++        
Sbjct: 552 VFQKEELVDGLRQLLKT 568


>gi|54310060|ref|YP_131080.1| prolyl-tRNA synthetase [Photobacterium profundum SS9]
 gi|81828683|sp|Q6LN48|SYP_PHOPR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|46914499|emb|CAG21278.1| putative prolyl-tRNA synthetase [Photobacterium profundum SS9]
          Length = 571

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 115/237 (48%), Positives = 154/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVEILMPVVQPFELWEETGRSEKMGPELLRFTDRHSRPFVLSPTAEEVVTSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EISSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +  S D  D+    E  
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAFSSD-SDYAANIEKA 236



 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/190 (33%), Positives = 105/190 (55%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A   D+ N    D     +      RGIEVGHIF  GT YS  M+    G DGK   ++M
Sbjct: 382 AQVEDLRNVVEGDLSPCGQGTIQLKRGIEVGHIFQLGTNYSKKMNCNVLGPDGKSATLEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  R+VA+ IE ++D  GIIWP ++APF+++++ +     +  + A E +YA L+
Sbjct: 442 GCYGIGVSRIVASAIEQNNDENGIIWPTALAPFQVAIVPMNMAKSEEVKAAAESLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F   +L+G P  +++G++ + + ++E K R  G +  + + +
Sbjct: 502 AAGIEVLFDDRKERPGVMFKDIELIGIPHTIVIGNRSLENGEMEYKDRRDGNKVAVPVAD 561

Query: 434 VINYASHRFS 443
           V+     + +
Sbjct: 562 VVEMIKQKLA 571


>gi|90413553|ref|ZP_01221544.1| prolyl-tRNA synthetase [Photobacterium profundum 3TCK]
 gi|90325485|gb|EAS41968.1| prolyl-tRNA synthetase [Photobacterium profundum 3TCK]
          Length = 571

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 113/237 (47%), Positives = 152/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVEILMPVVQPFELWEETGRSEKMGPELLRFTDRHSRPFVLSPTAEEVVTSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EISSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAF-SSESDYAANIEKA 236



 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPM 298
           D      I        A   D+ N    D     +      RGIEVGHIF  GT YS  M
Sbjct: 366 DDKHYFGINWGRDVELAQVEDLRNVVEGDLSPCGQGTIQLKRGIEVGHIFQLGTNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +    G DGK   ++MG YGIG  RVVA+ IE ++D  GIIWP ++APF+++++ +    
Sbjct: 426 NCNVLGPDGKSVTLEMGCYGIGVSRVVASAIEQNYDENGIIWPTALAPFQVAIVPMNMAK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A E +YA L+  G +V +DD  E+ G  F   +L+G P  +++G++ + + ++E
Sbjct: 486 SEEVKAAAESLYAELTAAGIEVLFDDRKERPGVMFKDIELIGIPHTIVIGNRSLENGEME 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K R  G +  + + +V+     + +
Sbjct: 546 YKDRRDGNKVAVPVTDVVEMIKQKLA 571


>gi|148261186|ref|YP_001235313.1| threonyl-tRNA synthetase [Acidiphilium cryptum JF-5]
 gi|166223313|sp|A5G0L2|SYT_ACICJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146402867|gb|ABQ31394.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Acidiphilium
           cryptum JF-5]
          Length = 640

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/437 (18%), Positives = 147/437 (33%), Gaps = 39/437 (8%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E  R D      ++ L    + + + G   W   G +    V A +R  Q   G 
Sbjct: 233 LKQLEEAERRDHRKIGRQMDLF--HMQEEAVGSVFWHEKGWRLYRTVEAYMRRRQEEFGY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           IE+  P L    LW  SG +D+Y   M     +  DK +   P +      IF   ++SY
Sbjct: 291 IEVRTPQLLDRKLWEASGHWDNYRSHMFIAEVEDEDKVLAVKPMNCPCHVQIFNHGLRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R E      G+MR R F   DA+ F    + +  +  +      R+
Sbjct: 351 RELPLRMAEFGACHRYEPSGALHGIMRVRAFAQDDAHIFCTEDQIADETV-RFVEMLRRV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++    P     S E                   D    +  +  +    
Sbjct: 410 YADFGFPEFAVKFADRPTPRSGSDE-----------------VWDKAEAALRSACETAGV 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             ++     A Y    +     L D++  + +     ++    F    +           
Sbjct: 453 EFTVNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVD----FVLPERLDASY---VTA 502

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G+   V +    +G+      ++  +  G+  +W         S++          D 
Sbjct: 503 ESGRARPVMLHRAIVGSFERFIGILIENCAGRFPLWLAPTQAAVASIVT------DANDY 556

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E + ARL + G  V  D   E+I ++     L   P  ++VG +      V I+   + 
Sbjct: 557 AETVAARLKEAGLAVATDTRNEKINAKVRDLSLALVPNILVVGRREAEQQTVSIRRLGSD 616

Query: 425 IREDMSLEEVINYASHR 441
            ++ M+L+E I      
Sbjct: 617 KQDSMTLDEAIATLKAE 633


>gi|298291991|ref|YP_003693930.1| threonyl-tRNA synthetase [Starkeya novella DSM 506]
 gi|296928502|gb|ADH89311.1| threonyl-tRNA synthetase [Starkeya novella DSM 506]
          Length = 666

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 83/434 (19%), Positives = 146/434 (33%), Gaps = 39/434 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      ++ L      +   G+  W P G     N+ A +R       
Sbjct: 247 YILQLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHPKGWNLFQNLVAYMRRRL-AAD 303

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG +  Y   M ++    D           P +      IF+ 
Sbjct: 304 YSEVNAPQVLDKSLWETSGHWGWYKDNMFKVQPAGDAEDNDRVYALKPMNCPGHVQIFKH 363

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R E      G+MR R F   DA+ F    + +         
Sbjct: 364 GLKSYRDLPMRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLKIN-E 422

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L  +   G + I ++  + P     S E    A+    +V          I +E+   
Sbjct: 423 LILSTYADFGFEEIVVKLSTRPEKRVGSDEVWDHAEDVMERVLTQ-------IEAESGGK 475

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                L        A Y    +     L D++    +     ++      FG        
Sbjct: 476 IKTGIL----PGEGAFYGPKFEY---TLRDAIGREWQCGTTQVDFNLPERFG-------- 520

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +  ADG+      +     G+M     ++   H G   +W   V     ++ +     
Sbjct: 521 AFYVDADGQKKTPVMIHRAICGSMERFTGILIEHHAGHFPLWLAPVQAVVATITSDGD-- 578

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  E+I A   K+G  V  D   E+I  +     +   P  ++VG K  ++  V I
Sbjct: 579 ----PYAEEIAAAARKMGLRVELDLRNEKINYKVREHSVAKVPALIVVGRKEAAERTVSI 634

Query: 419 KHRLTGIREDMSLE 432
           +   +  +  ++L+
Sbjct: 635 RRLGSQNQTTLTLD 648


>gi|283851379|ref|ZP_06368661.1| threonyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
 gi|283573329|gb|EFC21307.1| threonyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
          Length = 647

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/435 (17%), Positives = 152/435 (34%), Gaps = 40/435 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              Y   + +   RD      +L L +    +   G+  W P G+     +    R E  
Sbjct: 228 LKTYLKHLEEAKKRDHRKLGTQLDLFS-FSEEVGAGMPIWHPKGELVRTILEDFERREHL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +   +LW  SG YD+Y + M    + ++++    P +      I++S I
Sbjct: 287 KRGYSLVRGPLILRRELWERSGHYDNYRENM-YFTEIDEQSYGIKPMNCLAHMLIYKSRI 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  ++++ +  R E      G++R R+F   DA+      +  +     +    
Sbjct: 346 RSYRDLPQRYFELGVVHRHEKSGVLHGLLRVRQFTQDDAHILCRPDQLLEE-ITGVIKFV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +    G     +   + P     + E                   +    +     + 
Sbjct: 405 QDVVGLFGFDYE-VELSTRPEKSIGADE-----------------DWERATKALTDALES 446

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     I E   A Y    D+   KL D+L    + +    +    F    ++       
Sbjct: 447 LGLPYDINEGDGAFYGPKIDI---KLKDALERRWQCATVQCD----FTLPDRFD----LV 495

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  ADG+      +    +GA+     V+     G    W   V    + +         
Sbjct: 496 YTDADGERKRPVMLHRVILGAVERFLGVLIEHTAGALPTWLAPVQARILIVT------DA 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            ++  E+  ARL + G     DD  E++G +   A +   P  ++ G K      + ++ 
Sbjct: 550 QKEFAEQALARLLEAGIRAELDDRNEKLGFKVREAQVEKIPYMLVAGDKEKELGGLNVRL 609

Query: 421 RLTGIREDMSLEEVI 435
           R        +L+EV+
Sbjct: 610 RSGDNLGVKTLDEVV 624


>gi|120611523|ref|YP_971201.1| threonyl-tRNA synthetase [Acidovorax citrulli AAC00-1]
 gi|166223312|sp|A1TR39|SYT_ACIAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120589987|gb|ABM33427.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Acidovorax
           citrulli AAC00-1]
          Length = 639

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/439 (19%), Positives = 142/439 (32%), Gaps = 36/439 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L    I +HS G   W P G      V   +R+     G  E
Sbjct: 234 RIEEAEKRDHRRLGRELDLF--HIDEHSPGTVFWHPKGWTIWQGVEQYMRQVYRDNGYQE 291

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +    LW ++G +D Y + M    +         P +      IF   +KSYR+L
Sbjct: 292 VKGPQILDKHLWEKTGHWDKYRENMFT-TESEKHDYALKPMNCPGHILIFNQGVKSYRDL 350

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  + +     R+E      G+MR R F   D + F    +  +   N       +++  
Sbjct: 351 PLRYGEFGQCHRNEPTGGLHGIMRVRAFTQDDGHIFCTEDQIQQECINFT-ALLQKVYKD 409

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G   I  +  + P     S E                   D    +             
Sbjct: 410 FGFTDIIYKVATRPEKRIGSEE-----------------SWDKAENALIESLKASGCDYQ 452

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           I     A Y    +     L D++  + +     ++       G        A + G DG
Sbjct: 453 IAVGDGAFYGPKLEY---TLRDAIGRHWQCGTIQVDPSMPERLG--------AEYVGEDG 501

Query: 308 KDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           + H   +     +G++     ++   H G   +W          L    A D  CR+   
Sbjct: 502 QRHRPIVLHRAIVGSLERFIGILIEQHAGALPVWL--APVQVAVLNITGAQDDYCREIAA 559

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L   G  V  D   E+I  +     L   P  ++VG K  +   V ++ R     
Sbjct: 560 KLQKALPNQGLRVELDLRNEKITYKIREHSLQKLPYILVVGDKEKAAGAVAVRARGNRDL 619

Query: 427 EDMSLEEVINYASHRFSNN 445
             M LE  I+      ++ 
Sbjct: 620 GVMPLEAFISLIGQDIADK 638


>gi|73956414|ref|XP_546694.2| PREDICTED: similar to prolyl-tRNA synthetase
           (mitochondrial)(putative) [Canis familiaris]
          Length = 632

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 152/457 (33%), Positives = 229/457 (50%), Gaps = 46/457 (10%)

Query: 3   RSKYFLPI-LQENPR--------DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P  L+E+          D    S +LM + G+I+  S G Y  LP   +A++ +
Sbjct: 199 LSRMFQPQNLREDQVLSLEGRSDDLTCKSQRLMQQVGLIYPASPGCYHLLPYTVRAMEKL 258

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE 
Sbjct: 259 QRVIDQEMQAIGGQKVNMPSLSPAELWRATNRWDLMGKELLRLRDRHGKEYCLGPTHEEA 318

Query: 114 MT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T  +      SYR LPF  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ 
Sbjct: 319 VTALVASQKTLSYRQLPFLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAARQ 378

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y  +F RLGL+ I ++A+ G IGG  SHEF + AD GE +            
Sbjct: 379 TYGLVCGAYSSLFRRLGLRCIRVQADVGSIGGTASHEFQLPADIGEDRFAVCPSC----- 433

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                   A    +   +      ++    ARGIEVGH FY GT
Sbjct: 434 ---------------------GFSANMETLRLSQTDCPACQSPLTEARGIEVGHTFYLGT 472

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F  A G+    +MG YG+G  R++AA IE       I WP  +AP+++ LI
Sbjct: 473 KYSSIFNAQFTDAQGRPCPAEMGCYGLGVTRILAAAIEVLSTEDCIRWPGLLAPYQVCLI 532

Query: 353 NIKA--HDQVCRDACEKIYARLSKV-----GCDVFWDDMGEQ-IGSQFAVADLLGFPLQV 404
             K    ++V  +    +Y  +++      G +V  DD   + IG++   A+  G+P  +
Sbjct: 533 PPKKGSKEEVATELTGHLYDLITEAVPQLRG-EVLLDDRTHRTIGNRLKDANKFGYPFVI 591

Query: 405 IVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASH 440
           I G + + D    E+  + TG    ++ E V  + S 
Sbjct: 592 IAGKRALEDPAHFEVWSQNTGEVVFLTREGVTEFLSQ 628


>gi|254701818|ref|ZP_05163646.1| threonyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
          Length = 658

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 151/445 (33%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K    + + +R   + 
Sbjct: 233 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQKLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLRIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 411 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 457

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 458 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 508

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 509 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 562

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 563 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 620

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 621 NMRRLGSRDQESMTLDEAIARLCEE 645


>gi|229586468|ref|YP_002844969.1| threonyl-tRNA synthetase [Rickettsia africae ESF-5]
 gi|259516664|sp|C3PMR6|SYT_RICAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|228021518|gb|ACP53226.1| Threonyl-tRNA synthetase [Rickettsia africae ESF-5]
          Length = 635

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 154/438 (35%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L      + ++G+  W   G    + +   IR++  + G
Sbjct: 231 YLLMLEEAEKRDHRKLGRELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG ++ +  +M    + +DK +   P +      IF+  IKSY
Sbjct: 289 YTEVKTPVLVDKSLWEASGHWEKFRDDMF-ALETDDKTLALKPMNCPCHVQIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    + +  + +        +
Sbjct: 348 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCAAEQITDETVSF-CKLLTEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S+E                   D    +     +    
Sbjct: 407 YKDFGFTDIKVKFSDRPEIRAGSNE-----------------VWDKAENALKEAVEQAGF 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             ++     A Y    +     L D++    +     ++    F    +    + A++  
Sbjct: 450 NYTLNPGEGAFYGPKLEF---VLTDAIGRQWQCGTLQMD----FVLPER----LDASYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           A G+      +    +G++     ++   + G+  +W           + I        D
Sbjct: 499 ASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW------LAPVQVAIATITSDLND 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G    ++   ++I  +         P+  ++G +   + +V I+   T
Sbjct: 553 YALEVQKALIDNGIRTDFNISPDKINYKIREFSNQKIPMIAVIGKQEQENKQVAIRRLGT 612

Query: 424 GIREDMSLEEVINYASHR 441
             +E +S+E++I      
Sbjct: 613 TDQEVLSVEQLIAVVKEE 630


>gi|161829880|ref|YP_001596051.1| prolyl-tRNA synthetase [Coxiella burnetii RSA 331]
 gi|189083495|sp|A9N9Z2|SYP_COXBR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|161761747|gb|ABX77389.1| prolyl-tRNA synthetase [Coxiella burnetii RSA 331]
          Length = 564

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 130/237 (54%), Positives = 169/237 (71%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM+ + + G+Y+WLPLG + L  V  ++REE
Sbjct: 1   MKVSQFFLATVKETPADAVLASHQLMIRAGMLRKLASGLYTWLPLGLRVLQKVADVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 61  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 121 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S    D+    E  
Sbjct: 181 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSD-ESDYAANIEKA 236



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/203 (40%), Positives = 112/203 (55%), Gaps = 4/203 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
           DD   +N   E+   P  + +D+      D  P+ K     ARGIEVG +F  G KYS  
Sbjct: 363 DDFHWINVNWER-DVPLGSVADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRK 421

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+AT     GK  Y+QMG YGIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H
Sbjct: 422 MNATVVDELGKSRYLQMGCYGIGVSRTVAAAIEQNHDERGIIWPMPMAPFFIALVPVNMH 481

Query: 358 DQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                R+ACEK+Y  L   G +V WDD  E+ G  FA  DL+G P ++++    +    V
Sbjct: 482 KSYRVREACEKLYNELIDAGYEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIV 541

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
           E K R +   E++SLE V++   
Sbjct: 542 EYKARKSKEAENVSLENVLSVFR 564


>gi|241763800|ref|ZP_04761846.1| prolyl-tRNA synthetase [Acidovorax delafieldii 2AN]
 gi|241366932|gb|EER61337.1| prolyl-tRNA synthetase [Acidovorax delafieldii 2AN]
          Length = 580

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 159/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMTRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+LW E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELTMPVVQPAELWQETGRFEKMGPELLRIQDRHGRDFVVQPTSEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD     +K SY  M  +
Sbjct: 121 ELKSYKQLPKNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQAAAKASYQVMAAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE  +       D+    E  
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYCPQ-SDYAANMEKA 236



 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 74/184 (40%), Positives = 106/184 (57%), Gaps = 3/184 (1%)

Query: 259 TSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P    +    RGIEVGH+FY GTKYS  M+ATF G DGK  + +MG 
Sbjct: 392 VADLRNVVAGDRSPDGRGELAIERGIEVGHVFYLGTKYSKGMNATFLGDDGKPAFFEMGC 451

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           YGIG  R+ AA IE +HD +GIIWPD++APF + +  +        + A EK+YA L   
Sbjct: 452 YGIGVTRLPAAAIEQNHDERGIIWPDAIAPFTVVICPVGMDRSDAVKAAAEKLYADLLAA 511

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD GE+ G+ FA  +L+G P +V +G K + +  VE +HR       +++ +++
Sbjct: 512 GVDVILDDRGERPGAMFADWELIGVPHRVTIGDKSLKEGVVEYQHRRDAAATKVAVADIL 571

Query: 436 NYAS 439
               
Sbjct: 572 ARVK 575


>gi|317060327|ref|ZP_07924812.1| prolyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|313686003|gb|EFS22838.1| prolyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 569

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEI SH+L+LR GMI + + G+Y++LPLG + L  V  IIREE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIISHQLLLRAGMIKKLASGLYTYLPLGFRTLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +P LQ A+LW ESGR++  G+EM+RL DR+ +  + GPT+EEV+TDI R+
Sbjct: 61  MDRAGSQELLMPVLQPAELWRESGRWNVMGEEMVRLKDRHQRDFVLGPTNEEVITDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ K RDE RPRFG+MRSREF+MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKVRDERRPRFGLMRSREFIMKDAYSFHTSQESLDEEFENMKNT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S       
Sbjct: 181 YTRIFERCGLKFRPVEADSGAIGGSGSQEFHVLAESGEDEIIYSDGCSYAA 231



 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/183 (38%), Positives = 101/183 (55%), Gaps = 3/183 (1%)

Query: 261 DVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   K  +  P+   K  SARGIE GHIF  G KYS  + A++    G+   + MG YG
Sbjct: 384 DIRLVKAGEDCPKSNGKLHSARGIECGHIFKLGDKYSKALGASYLDEKGESKIMLMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R +AA IE ++D  GIIWP ++AP+ + +I     +       E+IY  L+K   D
Sbjct: 444 IGVGRTMAAAIEQNYDENGIIWPTALAPYLVDVIPANIKNTEQMKLAEEIYENLNKEHLD 503

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              DD  E+ G +F  ADL+GFP ++I G K  +++ VE+K R TG   ++S +EVI   
Sbjct: 504 AMIDDRDERPGFKFKDADLIGFPFKIICGKK-AAENIVELKIRKTGETLEVSADEVIPTI 562

Query: 439 SHR 441
              
Sbjct: 563 KEL 565


>gi|319649026|ref|ZP_08003235.1| ThrZ protein [Bacillus sp. BT1B_CT2]
 gi|317389020|gb|EFV69838.1| ThrZ protein [Bacillus sp. BT1B_CT2]
          Length = 639

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 163/445 (36%), Gaps = 41/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + Q    D      +L L   M  + + G+  +LP GQ     +  + RE QN
Sbjct: 232 LNEYLYFLEQAAKHDHRQLGKQLDLF--MFSEEAPGMPFYLPKGQIVRKELEKLSRELQN 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + +  LW +SG +D Y + M   ++ ++      P +      IF++++
Sbjct: 290 NASYDEVHTPFMMNYRLWEKSGHWDHYQENM-YFSEVDNTKFAIKPMNCPGHMLIFKNNL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP    +     R E      G++R R F   DA+ F    +       K+F   
Sbjct: 349 YSYRDLPIRLAEYGQVHRHEFSGSLNGLLRVRTFCQDDAHIFVREDQIESE-IKKVFHLI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +++  +G                   E+ V   T       +    +    S     DD
Sbjct: 408 DQVYRTIG------------------FEYSVELSTRPDDSLGNNHLWEVSEGSLKNVLDD 449

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     + E   A Y    D H   + D+L  + +     ++    F    K+      T
Sbjct: 450 LAIKYQVNEGDGAFYGPKIDFH---IKDALKRSHQCGTIQLD----FQMPEKFD----LT 498

Query: 302 FKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   + +    V +     G++     ++     G   +W   +    I + +I      
Sbjct: 499 YINHNNEKVRPVVIHRAIFGSIDRFFGILIEHFAGAFPVWLAPIQVQIIPISHI------ 552

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             + C  I + L ++G  V  ++  +++G +   A +   P  ++VG   + ++ V ++ 
Sbjct: 553 HLEYCLGIKSELKQLGIRVQINESNQKLGYKIREAQVQKIPYTLVVGDNEIKENGVNVRK 612

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                ++++S+E        +    
Sbjct: 613 YGEEQQKNVSIESFKKNILQQIKTR 637


>gi|289662612|ref|ZP_06484193.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289668443|ref|ZP_06489518.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 564

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 155/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +       D+    E
Sbjct: 181 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAF-STASDYAANVE 234



 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 1/193 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +       P       +  +   +    +   ARGIEVGH+F  G++Y+  + AT     
Sbjct: 370 NWGRDLPEPETVADVRNVVEGERAADGGELRLARGIEVGHVFQLGSQYAQALQATVIDEG 429

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDAC 365
           GK   ++MG YGIG  R+VAA IE +HD  GIIWP  +AP+++ +  I    D     A 
Sbjct: 430 GKAAVMKMGCYGIGISRIVAAAIEQNHDEAGIIWPAPMAPWQVVVCVINPKQDANVVAAA 489

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +   L   G D   DD G + G+ FA  +LLG P +V+V  + ++    E + R    
Sbjct: 490 QALLDELIAAGLDAALDDRGLRPGAMFADMELLGIPHRVVVSERGLAAGTFEYRARTADA 549

Query: 426 REDMSLEEVINYA 438
            E++    + +  
Sbjct: 550 AENLDRAGLFSRL 562


>gi|264676905|ref|YP_003276811.1| prolyl-tRNA synthetase [Comamonas testosteroni CNB-2]
 gi|262207417|gb|ACY31515.1| prolyl-tRNA synthetase [Comamonas testosteroni CNB-2]
          Length = 580

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 160/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++ +  L+E P DAE+ SHKLM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFLISTLKEAPADAEVVSHKLMMRAGMIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE ++P +Q A+LW E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAIETTMPVVQPAELWQETGRFEKMGPELLRIQDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + ++ SY  M  +
Sbjct: 121 EFKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDKDRDAAQISYQTMREA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL+   +RA+SG IGGDLS EF V+A TGE  +    +  D+    E  
Sbjct: 181 YKRIFDRFGLQYRAVRADSGAIGGDLSEEFQVIASTGEDAIVYCPN-SDYAANIEKA 236



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/189 (36%), Positives = 106/189 (56%), Gaps = 3/189 (1%)

Query: 257 AATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+ N    D  P+   +    RGIE+GH+FY GTKYS  M ATF G +GK  + +M
Sbjct: 390 AVVADLRNVVAGDRSPDGAGELAIERGIEIGHVFYLGTKYSKAMEATFLGDNGKPQHFEM 449

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLS 373
           G YGIG  R+ AA +E +HD +G+IWPD++APF + +  I     +  +   EK+Y  L 
Sbjct: 450 GCYGIGVTRLPAAAVEQNHDERGMIWPDAIAPFTVVICPIGMGRSEAVKTEAEKLYGELL 509

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G DV  DD  E+ G+  A  +L+G P +V++G + + +  VE + R       ++  E
Sbjct: 510 ALGVDVILDDRDERPGAMLADWELIGVPHRVVLGDRGLKEGVVEYQQRRDTEATKLATNE 569

Query: 434 VINYASHRF 442
           V+ +   R 
Sbjct: 570 VLAHLKSRL 578


>gi|261752375|ref|ZP_05996084.1| threonyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|261742128|gb|EEY30054.1| threonyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
          Length = 660

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 151/445 (33%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K    + + +R   + 
Sbjct: 235 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQKLVSYMRRRLDS 292

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 293 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 352

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 353 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLRIN 412

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 413 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 460 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 510

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 511 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 564

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 565 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 622

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 623 NMRRLGSRDQESMTLDEAIARLCEE 647


>gi|312794079|ref|YP_004027002.1| threonyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181219|gb|ADQ41389.1| threonyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 647

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 160/443 (36%), Gaps = 33/443 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L + T       +G+   +P G K L  +   + +E+ + 
Sbjct: 233 EYLKKLEEAKKRDHNRIGRELEIFTT-SEVVGQGLPLLMPKGAKILQILQRFVEDEEEKR 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +    P +  +DL+  SG +D Y   M  + +  ++ +   P        I+ S  +S
Sbjct: 292 GYLLTKTPYMAKSDLYKISGHWDHYRDGMFVIEEDENEVLALRPMTCPFQFLIYNSKQRS 351

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + +    FR+E      G++R R+F + DA+     P+  +  +  +      
Sbjct: 352 YRDLPIRYSETSTLFRNESSGEMHGLIRVRQFTLSDAHIICR-PDQVEEEFKGVLDLIQY 410

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I   LG            I  D+ + F       + +   + +  +          D + 
Sbjct: 411 IMKTLG------------IENDIWYRFSRWDPNNKEKYIDNPEAWEKTENDMKNILDKLG 458

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 +   A Y    D+  + ++    +   +    I+           +     T+ 
Sbjct: 459 INYKEAKGEAAFYGPKLDIQFKNVY---GKEDTIITVQIDFAL--------AERFDMTYV 507

Query: 304 GADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG+     +     IG      A++    +     +P  ++P +I +I +  +     
Sbjct: 508 DRDGQKKRPIIIHRSSIGCYERTLAMLI---EKYNGAFPLWLSPVQIRVIPVSDN---FN 561

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  + +   L + G  V  D   E +G +   A L   P  VIVG K   ++ V ++ R 
Sbjct: 562 EYAKNVARILKENGFRVEEDYRSETVGYKIRDAQLQKIPYMVIVGEKEQKENTVAVRDRK 621

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G     ++E+ I     +    
Sbjct: 622 KGDLGSFTIEDFIAMVKEKVDKK 644


>gi|255019923|ref|ZP_05291997.1| Threonyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756]
 gi|254970582|gb|EET28070.1| Threonyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756]
          Length = 454

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 148/447 (33%), Gaps = 40/447 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y   + +   RD       L L +  I +    G+  W P G +    +    R+   R 
Sbjct: 41  YLAQMAEAERRDHRRIGRDLDLFS--IQEDAGGGLVFWHPQGAQIRKVIEDYWRQAHLRG 98

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +    LW  SG  D Y   M +  +   +     P +      I+++ ++S
Sbjct: 99  GYELLYTPHIAHEKLWFTSGHKDFYADSMFQPMEDEGEPYQLKPMNCPFHILIYKNTLRS 158

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + ++   +R E+     G+MR R F   DA+ F   P+  +     +      
Sbjct: 159 YRDLPIRWAELGTVYRHEMSGALHGLMRVRGFTQDDAHIFCR-PDQIEAEIAGVLALTQN 217

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G +   +   + P     S E                   +    +         
Sbjct: 218 ILGTFGFQRYEVHLSTRPEHSVGSDE-----------------IWETATRALEGALARAG 260

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               +     A Y    D+   K+ D++    + S   ++    F    ++++     + 
Sbjct: 261 LEYRVDAGGGAFYGPKIDL---KIEDAIGRKWQCSTIQLD----FNLPQRFAM----EYV 309

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG       +     G++     ++   ++GK  +W        + +       +   
Sbjct: 310 DEDGSRRTPIMVHRAIFGSIERFFGILIEHYEGKFPLWLAPTQVVVLPI------SEHQA 363

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  + + + L   G  V  D   E+IG +     L   P   +VG +  +  +V ++ R 
Sbjct: 364 DYAQMVQSTLGAAGLRVESDLRNEKIGYKIRAHTLRRVPFLAVVGEREKAAGEVALRSRD 423

Query: 423 TGIREDMSLEEVINYASHRFSNNRPVL 449
                 + L +V         + +  L
Sbjct: 424 GVDLGSLKLADVAANLKAMDESRQNAL 450


>gi|220928798|ref|YP_002505707.1| threonyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|219999126|gb|ACL75727.1| threonyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 645

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 160/445 (35%), Gaps = 35/445 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L T  + +  +G+   +P G + +  +   + +E+ R 
Sbjct: 230 EYVTKLEEAKKRDHNKLGRELELFTT-VEEIGQGLPLLMPKGARIVQTLQRFVEDEEERR 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA--MIYGPTHEEVMTDIFRSHI 122
           G +    P +  +DL+  SG +  Y   M  L D       M   P        I+ + +
Sbjct: 289 GYVLTKTPLMAKSDLYKLSGHWQHYKDGMFLLGDEEKDEEVMALRPMTCPFQFMIYNTKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  + +    FR+E      G++R R+F + + +    TPE  +  +  +    
Sbjct: 349 HSYRDLPIRYGETSTLFRNEASGEMHGLIRVRQFTISEGH-LVCTPEQLEDEFKGVVDLI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +   LG            I  D+++ F       + +   +++  +       T  D 
Sbjct: 408 KFMMETLG------------IQDDVTYRFSKWDPKNKEKYIGNEEDWENVQDQMRTILDH 455

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+  + +     +   +    ++           +  ++  
Sbjct: 456 LKIDYKEAEGEAAFYGPKLDIQCKNVH---GKEDTIITVQVDFAL--------AERLNMV 504

Query: 302 FKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   + +  H   +    IG      A++    +     +P  + P +  ++ +      
Sbjct: 505 YVDKNNEKKHPYIIHRTSIGCYERTLAILI---EKYAGAFPTWLCPVQAKILPLVDKHH- 560

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   L   G  V  D   E+IG +   A +   P  +++G K + ++ V ++ 
Sbjct: 561 --DFAQKVAQMLRDKGVKVEVDTRNEKIGYKIREAQMEKIPYMLVIGDKEMENNAVSVRS 618

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    M  E+ ++         
Sbjct: 619 RKDGDLGAMPAEQFVDRIVEEIRTR 643


>gi|145634860|ref|ZP_01790568.1| prolyl-tRNA synthetase [Haemophilus influenzae PittAA]
 gi|145268026|gb|EDK08022.1| prolyl-tRNA synthetase [Haemophilus influenzae PittAA]
          Length = 572

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 146/428 (34%), Positives = 204/428 (47%), Gaps = 39/428 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E     
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAI 239

Query: 236 -------------NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                          D  +  ++  +VEQ+  P   T      K  D       +  RG 
Sbjct: 240 AIGERQAPTAEMCLVDTPNAKTIAELVEQFNLPIEKTVKTLIVKGADENQPLVALIIRGD 299

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
              +         +     F         +  G   +GA+ +    I          +  
Sbjct: 300 HELNEIKAQKHPLVADPLEFADETEIKAKIGAGVGSLGAVNLNIPAIIDRTVALMSDFSC 359

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYA------------RLS-KVGCDV--FWDDMGEQ 387
                     N+     V       +               L  K G +V   +     Q
Sbjct: 360 GANIDGKHYFNVNWERDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIF-----Q 414

Query: 388 IGSQFAVA 395
           +G +++ A
Sbjct: 415 LGKKYSEA 422



 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 70/208 (33%), Positives = 110/208 (52%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +  I   D +APF ++++ +   
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDERGIIWPSDEIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R +G +E +S +++++  + +  N
Sbjct: 544 EYKNRRSGEKEMISKDKLLSVLNEKLGN 571


>gi|145632080|ref|ZP_01787815.1| frataxin-like protein [Haemophilus influenzae 3655]
 gi|144986987|gb|EDJ93517.1| frataxin-like protein [Haemophilus influenzae 3655]
          Length = 572

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 146/428 (34%), Positives = 204/428 (47%), Gaps = 39/428 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E     
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAI 239

Query: 236 -------------NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                          D  +  ++  +VEQ+  P   T      K  D       +  RG 
Sbjct: 240 AIGERQAPTAEMCLVDTPNAKTIAELVEQFNLPIEKTVKTLIVKGADENQPLVALIIRGD 299

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
              +         +     F         +  G   +GA+ +    I          +  
Sbjct: 300 HELNEIKAQKHPLVADPLEFADETEIKAKIGAGVGSLGAVNLNIPAIIDRTVALMSDFSC 359

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYA------------RLS-KVGCDV--FWDDMGEQ 387
                     N+     V       +               L  K G +V   +     Q
Sbjct: 360 GANIDGKHYFNVNWERDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIF-----Q 414

Query: 388 IGSQFAVA 395
           +G +++ A
Sbjct: 415 LGKKYSEA 422



 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 110/208 (52%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +  I   D +APF ++++ +   
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEAVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGIPHMVVIGEKNLDNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R TG +E +S +++++  + +  N
Sbjct: 544 EYKNRRTGEKEMISKDKLLSVLNEKLGN 571


>gi|90961470|ref|YP_535386.1| threonyl-tRNA synthetase [Lactobacillus salivarius UCC118]
 gi|122993083|sp|Q1WUN2|SYT_LACS1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|90820664|gb|ABD99303.1| Threonyl-tRNA synthetase [Lactobacillus salivarius UCC118]
          Length = 649

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 151/443 (34%), Gaps = 37/443 (8%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           L   +E   RD  +  ++L L    +  +   G+  W+P G      +   I +++   G
Sbjct: 235 LQRQKEARERDHRVIGNELDLF--FVDPKVGAGLPYWMPNGATIRRVIERYIIDKEVAWG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKS 124
              +  P L + +L+ +SG +D Y ++M    D  D  M    P +      ++  H +S
Sbjct: 293 FQHVYTPVLANLNLYKQSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYNHHKRS 352

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    ++ +  R E       +     +  +     + P+  +     +      +
Sbjct: 353 YRELPLRIAELGMMHRYEKSGALTGLSRVREMTLNDGHDFIEPDHIEDEIKTLIKLMTEV 412

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS-ENTDFDDII 243
           ++   +     R                  D   T+ +   D M     S      DD+ 
Sbjct: 413 YNDFDITDYRFRLS--------------YRDPKNTEKYFDDDEMWEKSQSKLKAAMDDMG 458

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    DV  +    +L   + +S   ++    F    ++       + 
Sbjct: 459 LEYFEAEGEAAFYGPKIDVQTKT---ALGGEETLSTIQLD----FLLPERFD----LKYI 507

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           GADG++H    +    +  M    A +   + G    W          +  I   + +  
Sbjct: 508 GADGEEHRPVMVHRGIVSTMERFTAYLTEMYKGAFPTWLAPHQ-----VDIIPVKNDLHM 562

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D    + ++L   G  V  DD  E++G +   A +   P  +++G + VS+  V ++   
Sbjct: 563 DYVNDLSSKLRAHGIRVTVDDRNEKMGYKIRQAQVNKIPYTLVIGDEEVSNGTVTVRKYG 622

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 M+  E  N       N 
Sbjct: 623 EEKTNTMTKAEFKNLLFEDIENY 645


>gi|22325483|ref|NP_671778.1| EMB2761 (EMBRYO DEFECTIVE 2761); ATP binding / aminoacyl-tRNA
           ligase/ ligase, forming aminoacyl-tRNA and related
           compounds / nucleotide binding / threonine-tRNA ligase
           [Arabidopsis thaliana]
 gi|330250779|gb|AEC05873.1| putative threonyl-tRNA synthetase, putative / threonine--tRNA
           ligase [Arabidopsis thaliana]
          Length = 650

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 153/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   +E  R D       L L +  I  +   G+  W P G    + +    ++   
Sbjct: 241 KAYLHFKEEAKRRDHRRIGQDLDLFS--IQDEAGGGLVFWHPKGAIVRNIIEESWKKMHV 298

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +  ADLW  SG  D Y + M    +  D+     P +      +++   
Sbjct: 299 EHGYDLIYTPHVAKADLWKISGHLDFYRENMYDQMEIEDELYQLRPMNCPYHILLYQRKR 358

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    ++   +R EL     G+ R R F   DA+ F L  +        +    
Sbjct: 359 QSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDE-IRGVLDLT 417

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I  R G     +   + P                        D  +    +     DD
Sbjct: 418 EEILSRFGFNKYEVNLSTRPEKS-----------------VGGDDIWEKATCALRDALDD 460

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 + E   A Y    D+   K+ D+L    + S   ++    F    ++ +    T
Sbjct: 461 KGWSYEVDEGGGAFYGPKIDL---KIEDALGRKWQCSTIQVD----FNLPQRFDITYVDT 513

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                     + +    +G++     V+    +     +P  ++P ++ ++ +  +    
Sbjct: 514 NSDK---KRPIMIHRAVLGSLERFFGVLI---EHYAGDFPLWLSPVQVRVLPVTDN---Q 564

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            + C+++  +L   G        GE++      A+    PL  +VG K V    V ++ R
Sbjct: 565 LEFCKEVSKKLRACGVRAEL-CHGERLPKLIRNAETQKIPLMAVVGPKEVETGTVTVRSR 623

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    + ++++IN  +      
Sbjct: 624 FGGELGTIPVDDLINKINIAVETR 647


>gi|29653442|ref|NP_819134.1| prolyl-tRNA synthetase [Coxiella burnetii RSA 493]
 gi|81839111|sp|Q83F67|SYP_COXBU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|29540704|gb|AAO89648.1| prolyl-tRNA synthetase [Coxiella burnetii RSA 493]
          Length = 566

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 130/237 (54%), Positives = 169/237 (71%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++FL  ++E P DA +ASH+LM+R GM+ + + G+Y+WLPLG + L  V  ++REE
Sbjct: 3   MKVSQFFLATVKETPADAVLASHQLMIRAGMLRKLASGLYTWLPLGLRVLQKVADVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A LW ESGR+++YG E+LR+ DR+     +GPTHEEV+TDI R 
Sbjct: 63  MNRAGALELLMPIVQPASLWQESGRWEAYGAELLRIMDRHQNGFCFGPTHEEVITDIARQ 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  +G + +Y KMF +
Sbjct: 123 ELKSYKQLPLNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFDLDEKGMQAAYEKMFDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF RLGL    + A++G IGGD SHEF VLAD GE  V  S    D+    E  
Sbjct: 183 YRRIFTRLGLNFRAVLADTGAIGGDYSHEFQVLADVGEDTVVYSD-ESDYAANIEKA 238



 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/203 (40%), Positives = 112/203 (55%), Gaps = 4/203 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
           DD   +N   E+   P  + +D+      D  P+ K     ARGIEVG +F  G KYS  
Sbjct: 365 DDFHWINVNWER-DVPLGSVADIRKVVEGDISPDGKGRLRFARGIEVGQVFQLGDKYSRK 423

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           M+AT     GK  Y+QMG YGIG  R VAA IE +HD +GIIWP  +APF I+L+ +  H
Sbjct: 424 MNATVVDELGKSRYLQMGCYGIGVSRTVAAAIEQNHDERGIIWPMPMAPFFIALVPVNMH 483

Query: 358 DQV-CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                R+ACEK+Y  L   G +V WDD  E+ G  FA  DL+G P ++++    +    V
Sbjct: 484 KSYRVREACEKLYNELIDAGYEVLWDDRKERPGVMFADMDLIGIPHRLVISESGLDRGIV 543

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
           E K R +   E++SLE V++   
Sbjct: 544 EYKARKSKEAENVSLENVLSVFR 566


>gi|62320472|dbj|BAD94986.1| putative protein [Arabidopsis thaliana]
          Length = 426

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 153/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   +E  R D       L L +  I  +   G+  W P G    + +    ++   
Sbjct: 17  KAYLHFKEEAKRRDHRRIGQDLDLFS--IQDEAGGGLVFWHPKGAIVRNIIEESWKKMHV 74

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +  ADLW  SG  D Y + M    +  D+     P +      +++   
Sbjct: 75  EHGYDLIYTPHVAKADLWKISGHLDFYRENMYDQMEIEDELYQLRPMNCPYHILLYQRKR 134

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    ++   +R EL     G+ R R F   DA+ F L  +        +    
Sbjct: 135 QSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDE-IRGVLDLT 193

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I  R G     +   + P                        D  +    +     DD
Sbjct: 194 EEILSRFGFNKYEVNLSTRPEKS-----------------VGGDDIWEKATCALRDALDD 236

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 + E   A Y    D+   K+ D+L    + S   ++    F    ++ +    T
Sbjct: 237 RGWSYEVDEGGGAFYGPKIDL---KIEDALGRKWQCSTIQVD----FNLPQRFDITYVDT 289

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                     + +    +G++     V+    +     +P  ++P ++ ++ +  +    
Sbjct: 290 NSDK---KRPIMIHRAVLGSLERFFGVLI---EHYAGDFPLWLSPVQVRVLPVTDN---Q 340

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            + C+++  +L   G        GE++      A+    PL  +VG K V    V ++ R
Sbjct: 341 LEFCKEVSKKLRACGVRAEL-CHGERLPKLIRNAETQKIPLMAVVGPKEVETGTVTVRSR 399

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    + ++++IN  +      
Sbjct: 400 FGGELGTIPVDDLINKINIAVETR 423


>gi|332558829|ref|ZP_08413151.1| threonyl-tRNA synthetase [Rhodobacter sphaeroides WS8N]
 gi|332276541|gb|EGJ21856.1| threonyl-tRNA synthetase [Rhodobacter sphaeroides WS8N]
          Length = 646

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 151/443 (34%), Gaps = 45/443 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L    + + + G+  W P G +    +   +R    +
Sbjct: 234 KAYLHMLEEAAKRDHRKLGREMELF--HLQEEAPGMVFWHPNGWQIYRTLEDYMRGRLRQ 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIF 118
            G  E+  P +    LW  SG +++Y + M  +    + A         P +      ++
Sbjct: 292 AGYKEIRTPQVVDRKLWEASGHWEAYKENMFIVEVEEEHAKEKRINALKPMNCPCHVQVY 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F+  DA+ F  T +  +      
Sbjct: 352 NQGLKSYRDLPLRLAEFGSCHRYESSGSMHGLMRVRGFVQDDAHIFC-TEDQIESECAAF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++  LG  S  ++  + P     S E     +T                 +   
Sbjct: 411 IELLSSVYKDLGFDSFEIKLSTRPEVRIGSDEAWDKVET-----------------ALEN 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               + +   I     A Y    D    KL D++    +     ++       G      
Sbjct: 454 AIKKVGAAYEIDPGEGAFYGPKLDF---KLTDAIGRKWQCGTFQVDPNLPTRLG------ 504

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G DG  H    +    +G+      ++  ++ GK   W         S++    
Sbjct: 505 --AEYIGEDGAKHRPYMLHRAILGSFERFIGILIENYAGKLPFWLAPRQVVVASIV---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     ++ A L   G     D   E+I  +     +   P+ + +G + V    V
Sbjct: 559 --SDADPYVAEVVAALRARGVRAEADTRNEKINYKVREHSVGKVPVILAIGMQEVEARSV 616

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
            ++       E M L++V++  +
Sbjct: 617 SVRRLGETRTESMGLDQVVDQLA 639


>gi|53712976|ref|YP_098968.1| threonyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60681188|ref|YP_211332.1| threonyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|253563046|ref|ZP_04840503.1| threonyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|265763073|ref|ZP_06091641.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|73919767|sp|Q5LEQ6|SYT_BACFN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73919768|sp|Q64VP2|SYT_BACFR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|52215841|dbj|BAD48434.1| threonyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60492622|emb|CAH07394.1| putative threonyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|251946822|gb|EES87104.1| threonyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|263255681|gb|EEZ27027.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|301162677|emb|CBW22224.1| putative threonyl-tRNA synthetase [Bacteroides fragilis 638R]
          Length = 646

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 148/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLALMEEAKKRDHRKIGKEMQLFM-FSDTVGKGLPMWLPKGTALRLRLQDFLRRIQTRY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L+V SG Y  YGK+  +        +     P +     +I+++  
Sbjct: 289 DYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEIYKNFP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKGE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F                +  D     I L D    + +   D           +  +
Sbjct: 408 SIVFR--------------SMDFDNFEAQISLRDKVNREKYIGSDENWEKAEQAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLKAKIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFEL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G+D + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPEQVVILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  EK+   L         DD  E+IG +    ++   P  +IVG K   + +V ++
Sbjct: 557 KFNEYAEKVKTYLKMKEIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M  EE     +    N
Sbjct: 617 RQGEGDKGTMKFEEFGEILNEEVQN 641


>gi|222640294|gb|EEE68426.1| hypothetical protein OsJ_26793 [Oryza sativa Japonica Group]
          Length = 701

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 159/446 (35%), Gaps = 38/446 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  +Y   + +   RD  +      L     HQ S G   +LP G    + +   +R++ 
Sbjct: 293 RLKEYKHLLEEAKKRDHRLLGQTQDLF--FFHQLSPGSCFFLPHGAIIYNKLMDFLRQQY 350

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + +  LW  SG   +Y + M  + +   +     P +      +F   
Sbjct: 351 RDRGYQEVLSPNIYNMQLWETSGHAANYKENMF-VFEIEKQEFGLKPMNCPGHCLMFEHR 409

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP       +  R+EL     G+ R R F   DA+ F       K     +   
Sbjct: 410 VRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCR-ESQIKDEVKAVLDF 468

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G K   +   + P       E                   +          +
Sbjct: 469 INYVYEIFGFKYE-LELSTRPEKYLGDIE-----------------TWNKAEQQLTEALN 510

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +      I E   A Y    D+    +FD+L    + +   ++    F    ++ L  SA
Sbjct: 511 EFGKPWQINEGDGAFYGPKIDIG---VFDALKRKFQCATLQLD----FQLPLRFKLTYSA 563

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                   +  V +    +G++  + A++    +     WP  ++P +  + +I ++   
Sbjct: 564 E--DEAKLERPVMIHRAILGSVERMFAILL---EHYNGKWPLWLSPRQAIVCSISSNS-- 616

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +++ AR+ + G  V  D+    I  +   A L  F   ++VG++     +V ++ 
Sbjct: 617 -VEYAKQVRARIHEAGFHVAIDETDRTIQKKVREAQLAQFNYILVVGAQEAETGQVSVRV 675

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R       +S++++I       +  +
Sbjct: 676 RDKAELATVSIDDIITRFKEEVAAYK 701


>gi|109005002|ref|XP_001114166.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Macaca mulatta]
          Length = 475

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 147/458 (32%), Positives = 229/458 (50%), Gaps = 48/458 (10%)

Query: 3   RSKYFLPI-LQENP--------RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P  L+E+          D    S +LML+ G+I+  S G Y  LP   +A++ +
Sbjct: 42  LSRVFQPQNLREDQVLSLQDKFGDLTCKSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKL 101

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++PTL  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE 
Sbjct: 102 VRVIDQEMQAIGGQKVNMPTLSPAELWQATNRWDLMGKELLRLRDRHGKEYCLGPTHEEA 161

Query: 114 MT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T  I      SY+ LPF  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ 
Sbjct: 162 ITALIAAQKKLSYKQLPFLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQQ 221

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +YN +  +Y  +F+RLGL+ + ++A+ G IGG +SHEF +  D GE ++           
Sbjct: 222 TYNLVCDAYCSLFNRLGLRFVKVQADVGSIGGTMSHEFQLPVDVGEDRLAICPHC----- 276

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                +  A    +   ++     ++     +GIEVGH FY GT
Sbjct: 277 ---------------------SFSANLETLDLSQMNCPACQSPLTETKGIEVGHTFYLGT 315

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F    GK    +MG YG+G  R++AA IE       + WP  +AP++  LI
Sbjct: 316 KYSSIFNAQFTNIYGKPSLAEMGCYGLGVTRILAAAIEVLSTEDCVRWPSLLAPYQACLI 375

Query: 353 NIKAHDQVCRDACEKIYARLSKV--------GCDVFWDDMGE-QIGSQFAVADLLGFPLQ 403
             K   +   +A  ++  +L             +V  DD     IG++   A+  G+P  
Sbjct: 376 PPKKGSKE--EAASELIGQLCDHITEAVPQLHGEVLLDDRTHLTIGNRLKDANKFGYPFV 433

Query: 404 VIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASH 440
           +I G + + D    E+  + TG    ++ + V++  + 
Sbjct: 434 IIAGKRALEDPAHFEVWCQNTGEVVFLTKDGVMDLLTQ 471


>gi|297835784|ref|XP_002885774.1| hypothetical protein ARALYDRAFT_319286 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331614|gb|EFH62033.1| hypothetical protein ARALYDRAFT_319286 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 650

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 152/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   +E  R D       L L +  I  +   G+  W P G    + +    ++   
Sbjct: 241 KAYLHFKEEAKRRDHRRIGQDLDLFS--IQDEAGGGLVFWHPKGAIVRNIIEESWKKMHV 298

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +  ADLW  SG  D Y + M    +  D+     P +      +++   
Sbjct: 299 EHGYDLIYTPHVAKADLWKISGHLDFYRENMYDQMEIEDELYQLRPMNCPYHILLYQRKR 358

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    ++   +R EL     G+ R R F   DA+ F L  +        +    
Sbjct: 359 QSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDE-IRGVLDLT 417

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I  R G     +   + P                        D  +    +     DD
Sbjct: 418 EEILSRFGFNKYEVNLSTRPEKS-----------------VGDDDIWEKATCALRDALDD 460

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 + E   A Y    D+   K+ D+L    + S   ++    F    ++ +    T
Sbjct: 461 KGWSYEVDEGGGAFYGPKIDL---KIEDALGRKWQCSTIQVD----FNLPQRFDITYVDT 513

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                     + +    +G++     V+    +     +P  ++P ++ ++ +  +    
Sbjct: 514 NSDK---KRPIMIHRAVLGSLERFFGVLI---EHYAGDFPLWLSPIQVRVLPVTDN---Q 564

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            + C+++  +L   G        GE++      A+    PL  +VG K V    V ++ R
Sbjct: 565 LEFCKEVSKKLRACGVRAEL-CHGERLPKLIRNAETQKIPLMAVVGPKEVETGTVTVRSR 623

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    + +++ IN  +      
Sbjct: 624 FGGELGTIPVDDFINKINIAVETR 647


>gi|319944615|ref|ZP_08018883.1| proline--tRNA ligase [Lautropia mirabilis ATCC 51599]
 gi|319742152|gb|EFV94571.1| proline--tRNA ligase [Lautropia mirabilis ATCC 51599]
          Length = 589

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 121/235 (51%), Positives = 159/235 (67%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +   LP  +E P DAE+ SHKLM R GMI + + GIY+++PLG + +  + AIIREE
Sbjct: 1   MKATALHLPTFKEAPADAEVVSHKLMTRAGMIRKLAGGIYTYMPLGLRVIRRIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE+ +P +Q A+LW+ESGR++ YG E+LR+ DR+ +  +  PT EEV+TD+ R 
Sbjct: 61  MDAAGAIELLMPVIQPAELWMESGRWEEYGPELLRIRDRHQRDFVIQPTSEEVVTDLARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP  FY IQ KFRDE RPRFGVMR REF MKDAYSFD   E +  SY KMF +
Sbjct: 121 DLRSYRQLPKNFYHIQTKFRDERRPRFGVMRGREFTMKDAYSFDRDSESALVSYRKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL+   + A++G IGG  SHEF V+ADTGE  +       D+    E
Sbjct: 181 YHRIFDRLGLQYRAVAADTGSIGGSASHEFQVIADTGEDALVY-STGSDYAANIE 234



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/201 (32%), Positives = 107/201 (53%), Gaps = 3/201 (1%)

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATF 302
           L   + +        +D+ N +  D  P+ +      RGIEVGH+FY GTKYS  M+ATF
Sbjct: 386 LPEPLPEGQVGEVMIADIRNVQAGDPSPDGQGTLAIQRGIEVGHVFYLGTKYSQAMNATF 445

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVC 361
              +G+   ++MG YGIG  R++ A IE +HD KGIIWP S+APF++ +  +     +  
Sbjct: 446 IDENGQSKPLEMGCYGIGVTRLLGAAIEQNHDDKGIIWPASIAPFEVVVCPMGLERSEAV 505

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           R+A +++ A L   G     DD  E+ G  FA  +L+G PL++ VG + + +  +E+  R
Sbjct: 506 REAVDRLAADLQAAGIRYVVDDRNERPGVMFADWELIGVPLRITVGDRGLKEGLLELTVR 565

Query: 422 LTGIREDMSLEEVINYASHRF 442
              +   ++  +V+       
Sbjct: 566 RGMVTHKVAPADVLAEVQKLL 586


>gi|15603235|ref|NP_246309.1| prolyl-tRNA synthetase [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|81856712|sp|Q9CL72|SYP_PASMU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|12721741|gb|AAK03454.1| ProS [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 571

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 119/252 (47%), Positives = 163/252 (64%), Gaps = 1/252 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P +A I SH+LMLR GMI   + G+Y+WLP G + L+ V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPAEASIVSHQLMLRAGMIRPLASGLYTWLPTGLRVLNKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA+E+ +   Q A+LW ESGR++ YG E+LR  DR ++  + GPT+EEV+TD+ R 
Sbjct: 61  MDKSGALEVKMAVTQPAELWQESGRWEEYGPELLRFKDRGERDFVIGPTNEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   Y IQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPLNLYHIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTTHECLQKTYDVMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E  +  
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLAQSGEDDVVF-STESDFAANIELAEAV 239

Query: 241 DIISLNSIVEQW 252
            +    +  E+ 
Sbjct: 240 ALGERGAATEEL 251



 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 73/193 (37%), Positives = 118/193 (61%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M+AT +G DG+   +
Sbjct: 379 PVPHIADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSAAMNATVQGEDGRPQTM 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYAR 371
            MG YGIG  RV+AA IE  HD +GIIWPD++APFK++++ +     +  +   E++Y  
Sbjct: 439 IMGCYGIGVTRVIAAAIEQHHDERGIIWPDNIAPFKVAIVPMNMHKSESVQQFAEELYRT 498

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+  G +V +DD  E+ G  FA  +L+G P  +++G K +   ++E K+R +G +E ++ 
Sbjct: 499 LTAQGVEVIFDDRKERPGVMFADMELIGVPHMIVIGEKNLEKGEIEYKYRRSGEKEMIAK 558

Query: 432 EEVINYASHRFSN 444
           +++++    +F++
Sbjct: 559 DQLLDVLKAKFAS 571


>gi|58039289|ref|YP_191253.1| threonyl-tRNA synthetase [Gluconobacter oxydans 621H]
 gi|73919795|sp|Q5FSP9|SYT_GLUOX RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|58001703|gb|AAW60597.1| Threonyl-tRNA synthetase [Gluconobacter oxydans 621H]
          Length = 645

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 147/438 (33%), Gaps = 40/438 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            L + +   RD      ++ L    I + + G   W   G +    +   +R  Q R   
Sbjct: 233 LLRLEEAEKRDHRRIGREMDLF--HIQEEAVGQIFWHRKGWRLYTVLQDYMRRAQERNNY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            E+  P L    LW  SG +D Y + M     +  DK +   P +      IFR  ++SY
Sbjct: 291 EEVRTPQLVDRALWEASGHWDKYRENMFIATVEDEDKTLALKPMNCPCHVQIFRHGLRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R E      G+MR R F   DA+ F    + +  +  K       +
Sbjct: 351 RELPLRMAEFGACHRYEPSGALHGIMRVRGFTQDDAHIFCTDDQIADET-AKFVKMLAEV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +  LG  +  ++    P     S E                   D    S     +    
Sbjct: 410 YSDLGFDTFRVKFSDRPETRAGSDE-----------------VWDRAEGSLKKACEIAGV 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D++  + +     ++              + A++ G
Sbjct: 453 EYEYNPGEGAFYGPKLEF---VLTDAIGRDWQCGTLQVDYVLP--------ERLDASYIG 501

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D  +   V +    +G+      ++   + GK  +W         S++          D
Sbjct: 502 EDSNRHRPVMLHRAILGSFERFIGILIEQYAGKFPLWLAPTQVVVASIV------SDAAD 555

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A L   G  V  D   ++I ++     L   P+ ++VG +   + KV ++    
Sbjct: 556 YANEVAATLKAAGLQVETDTRSDKINAKIREHSLARVPVILVVGRREAEERKVAMRRLGG 615

Query: 424 GIREDMSLEEVINYASHR 441
             +E +SL++ +   +  
Sbjct: 616 AAQEILSLDDAVAALAKE 633


>gi|256846083|ref|ZP_05551541.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
 gi|256719642|gb|EEU33197.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
          Length = 567

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 120/251 (47%), Positives = 164/251 (65%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S    ++    E    +
Sbjct: 181 YSRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD-GSEYAANIEKAVSE 239

Query: 241 DIISLNSIVEQ 251
            I      +++
Sbjct: 240 LINPPKEELKE 250



 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/184 (39%), Positives = 101/184 (54%), Gaps = 2/184 (1%)

Query: 261 DVHNEKLFDSLP-ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           D+   K+ ++     K  SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG YGI
Sbjct: 383 DIRTAKVGENCITGGKLYSARGIECGQIFKLGDKYSKAMNATYLDENGKTQYMLMGCYGI 442

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R +AA IE ++D  GIIWP S+AP+ + +I     ++V     EKIY  L +   D 
Sbjct: 443 GVTRTMAAAIEQNNDENGIIWPVSIAPYTVDVIPANIKNEVQVSLAEKIYNELEEEKIDT 502

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E+ G +F  ADL+GFP +V+VG +   +  VE+K R TG   ++   E+I    
Sbjct: 503 MLDDRDEKPGFKFKDADLIGFPFKVVVGKR-ADEGIVELKIRRTGETLELPQNEIIAKIK 561

Query: 440 HRFS 443
               
Sbjct: 562 ELMK 565


>gi|212703017|ref|ZP_03311145.1| hypothetical protein DESPIG_01055 [Desulfovibrio piger ATCC 29098]
 gi|212673605|gb|EEB34088.1| hypothetical protein DESPIG_01055 [Desulfovibrio piger ATCC 29098]
          Length = 576

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 121/237 (51%), Positives = 165/237 (69%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  ++P L+E+P +AE+ SHKL+LR GM+ + + G+Y +LPLG KAL+NV  ++REE
Sbjct: 1   MRFSSTYIPTLKESPSEAEVVSHKLLLRAGMVRKLTSGVYIYLPLGLKALENVQRVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +   DLW E+GR++ YGKE+LR  DRND+    GPTHEEV+TD+ R 
Sbjct: 61  MDAAGFSELLMPMVIPGDLWKETGRWEYYGKELLRFKDRNDRDYCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD +  G+  SY  M+ +
Sbjct: 121 EVRSYRQLPVRLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFDSSDAGADESYKLMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF RLGL+   + A++G IGG+ SHEF+VLADTGE  +    +   +    E  
Sbjct: 181 YCRIFKRLGLRFRAVEADTGSIGGNFSHEFMVLADTGEDTIAACTECS-YAANVERA 236



 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/181 (39%), Positives = 104/181 (57%), Gaps = 2/181 (1%)

Query: 260 SDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+    L D  P         +GIEVGHIF  GTKYS  M A +   +GK++ + MG Y
Sbjct: 380 ADLRCITLSDPCPRCGGAIELPKGIEVGHIFKLGTKYSDAMHAVYLDENGKENVMIMGCY 439

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  RVVA+ IE +HD  GII+P +VAP +  L+N+    +  R   E+IYA L K G 
Sbjct: 440 GIGISRVVASAIEQNHDEHGIIFPPTVAPVECILLNLDPGKEEVRAKAEEIYAMLCKAGV 499

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  DD  E+ G +F  ADL+G P+Q+++G K +S   +E K R TG + ++ ++ +   
Sbjct: 500 TVLLDDREERPGVKFKDADLIGAPMQLVLGGKGLSRGVLECKDRRTGEKGELPVDALETA 559

Query: 438 A 438
            
Sbjct: 560 L 560


>gi|160902301|ref|YP_001567882.1| threonyl-tRNA synthetase [Petrotoga mobilis SJ95]
 gi|189083616|sp|A9BHF0|SYT_PETMO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160359945|gb|ABX31559.1| threonyl-tRNA synthetase [Petrotoga mobilis SJ95]
          Length = 640

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 157/442 (35%), Gaps = 41/442 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L +++E  R D      KL L   M+  + + G+  +LP G+  L+ + A  R+   + 
Sbjct: 231 YLNMIEEAKRRDHRKLGPKLNLF--MLQSEMAPGMPFFLPNGKIVLNELMAYSRQVHKKY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E+  P + +  LW +SG +D Y + M    ++ D  M   P +      I++++  S
Sbjct: 289 GYVEVETPQIMNIKLWHQSGHWDHYKENMF-FTEKEDMPMAVKPMNCPGHILIYKNNFVS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP   ++     R E      G+ R R F   DA+ F +  +  +     + +    
Sbjct: 348 YRDLPIRMFEFGKVHRYERSGVLHGLFRVRAFTQDDAHIFCMPSQMEEEIIKVIQL---- 403

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                          +  I      ++  +  T         +  +    +     +   
Sbjct: 404 ---------------TNEIFSTFGFKYEAILSTMPEDHMGDIESWERATDALKKALEKSN 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D     + DSL    + +   ++      F   Y+    A   
Sbjct: 449 MEYRIDEGEGAFYGPKIDF---NVTDSLGRKWQCTTIQLDFQMPERFDMVYADENDA--- 502

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               +   V +     G++     ++  +  G+   W           ++I    +   +
Sbjct: 503 ----QKRPVMIHRAIFGSLERFFGILIENFAGEFPTW------LSPVQVSILPVSEKFNE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K    L + G  V+ +D    +G +     +   P  ++ G K ++   + I+ R  
Sbjct: 553 EAKKFSRILEQEGIRVYVNDSDATVGYKIRNEQMKKVPYMIVFGEKEMNSDTINIRTRKG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              E++S E  I    +   N 
Sbjct: 613 DTIENVSKERFIEEIKNEIKNR 634


>gi|322515550|ref|ZP_08068532.1| proline--tRNA ligase [Actinobacillus ureae ATCC 25976]
 gi|322118393|gb|EFX90656.1| proline--tRNA ligase [Actinobacillus ureae ATCC 25976]
          Length = 571

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 122/243 (50%), Positives = 158/243 (65%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR  +  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWQESGRWNDYGAELLRFVDRGSRDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHVEKASLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E  +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAV 239

Query: 241 DII 243
            + 
Sbjct: 240 AVG 242



 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 110/207 (53%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPM 298
           D     ++  +  A     +D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M
Sbjct: 364 DGKHYFNVNWERDAAMPEVADLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
            AT +G DGK   + MG YGIG  RVVAA IE  HD +  I   D +APF ++++ +   
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSESVQQFSEELYRSLKAQGVDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLVNGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R TG +  ++ ++++ +      
Sbjct: 544 EYKNRRTGEKSMITKDQLLAFLKENVK 570


>gi|221639813|ref|YP_002526075.1| threonyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
 gi|254783534|sp|B9KKC7|SYT_RHOSK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221160594|gb|ACM01574.1| Threonyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
          Length = 646

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 151/443 (34%), Gaps = 45/443 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L    + + + G+  W P G +    +   +R    +
Sbjct: 234 KAYLHMLEEAAKRDHRKLGREMELF--HLQEEAPGMVFWHPNGWQIYRTLEDYMRGRLRQ 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIF 118
            G  E+  P +    LW  SG +++Y + M  +    + A         P +      ++
Sbjct: 292 AGYKEIRTPQVVDRKLWEASGHWEAYKENMFIVEVEEEHAKEKRINALKPMNCPCHVQVY 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F+  DA+ F  T +  +      
Sbjct: 352 NQGLKSYRDLPLRLAEFGSCHRYESSGSMHGLMRVRGFVQDDAHIFC-TEDQIESECAAF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++  LG  S  ++  + P     S E     +T                 +   
Sbjct: 411 IELLSSVYKDLGFDSFEIKLSTRPEVRIGSDEAWDKVET-----------------ALEN 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               + +   I     A Y    D    KL D++    +     ++       G      
Sbjct: 454 AIRKVGAAYEIDPGEGAFYGPKLDF---KLTDAIGRKWQCGTFQVDPNLPTRLG------ 504

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G DG  H    +    +G+      ++  ++ GK   W         S++    
Sbjct: 505 --AEYIGEDGAKHRPYMLHRAILGSFERFIGILIENYAGKLPFWLAPRQVVVASIV---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     ++ A L   G     D   E+I  +     +   P+ + +G + V    V
Sbjct: 559 --SDADPYVAEVVAALRARGVRAEADTRNEKINYKVREHSVGKVPVILAIGMQEVEARSV 616

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
            ++       E M L++V++  +
Sbjct: 617 SVRRLGETRTESMGLDQVVDQLA 639


>gi|229918663|ref|YP_002887309.1| prolyl-tRNA synthetase [Exiguobacterium sp. AT1b]
 gi|229470092|gb|ACQ71864.1| prolyl-tRNA synthetase [Exiguobacterium sp. AT1b]
          Length = 569

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 122/269 (45%), Positives = 165/269 (61%), Gaps = 4/269 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DAE  SH+L++R G I Q++ GIYS+LPLG K L N+  IIREE
Sbjct: 4   MKQSRLLMPTLREVPADAEAVSHQLLVRGGFIRQNAAGIYSYLPLGHKVLHNIQTIIREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q A+LW E+GR+  YG E++RL DR+D+    G THEE++T I R 
Sbjct: 64  MNRAGAQELLMPAIQPAELWEETGRWGIYGPELMRLTDRHDRRFALGATHEELITSIVRD 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE RPRFG++R REFLMKDAYSF  T E     Y  M+ +
Sbjct: 124 ELNSYKKLPMNLYQIQTKYRDERRPRFGLLRGREFLMKDAYSFHATQEDLDEEYTNMYNA 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK  P+ A+SG IGG  +HEF  LAD GE  +  +    D    + N +  
Sbjct: 184 YSRIFDRTGLKYRPVVADSGAIGGKDTHEFQALADIGEDTIVYT----DTSNYAANIEMA 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           + +    + +    P        N  + D
Sbjct: 240 ETLDRYEMQQADVRPLEKVDTEENRTIED 268



 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/186 (39%), Positives = 107/186 (57%), Gaps = 4/186 (2%)

Query: 261 DVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+      D  P+       ARGIEVG +F  GT+YS  M ATF   +G+   + MG YG
Sbjct: 384 DLRFVVEGDLAPDESGPVRFARGIEVGQVFKLGTRYSEAMGATFLNEEGRAEPLIMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R ++A++E  HD +GI+WP +VAPF + LI I A D+   +   ++Y  L +   D
Sbjct: 444 IGVSRTLSAIVEQHHDDRGIVWPRNVAPFDLHLIAINAKDETQVELANRLYEELGQT-YD 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V +DD  E+ G +FA ADL+G P++V VG K   +  VE+K R TG   + S++E+    
Sbjct: 503 VLFDDRKERAGVKFADADLIGLPIRVNVGKK-AGEGIVEVKVRATGEVIETSIDELKEVI 561

Query: 439 SHRFSN 444
           + +FS 
Sbjct: 562 ASKFSE 567


>gi|229845777|ref|ZP_04465889.1| prolyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
 gi|229810781|gb|EEP46498.1| prolyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
          Length = 572

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 145/428 (33%), Positives = 203/428 (47%), Gaps = 39/428 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E     
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAI 239

Query: 236 -------------NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                          D  +  ++  +VEQ+  P   T      K  D       +  RG 
Sbjct: 240 AIGERQAPTAEMCLVDTPNAKTIAELVEQFNLPIEKTVKTLIVKGADENQPLVALIIRGD 299

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
              +         +     F         +  G   +G + +    I          +  
Sbjct: 300 HELNEIKAQKHPLVADPLEFADETEIKAKIGAGVGSLGPVNLNIPAIIDRTVALMSDFSC 359

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYA------------RLS-KVGCDV--FWDDMGEQ 387
                     N+     V       +               L  K G +V   +     Q
Sbjct: 360 GANIDGKHYFNVNWVRDVAMPEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIF-----Q 414

Query: 388 IGSQFAVA 395
           +G +++ A
Sbjct: 415 LGKKYSEA 422



 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/188 (36%), Positives = 106/188 (56%), Gaps = 4/188 (2%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K      RGIEVGHIF  G KYS  + AT +G DGK   + MG YG
Sbjct: 384 DLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAVKATVQGEDGKPLVMTMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVG 376
           IG  RVVA+ IE  HD +  I   D +APF ++++ +     +  +   E++Y  L   G
Sbjct: 444 IGVTRVVASAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMHKSEAVQKYAEELYRTLQSQG 503

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV +DD  E+ G  FA  +L+G P  V++G K + + ++E K+R TG +E +S +++++
Sbjct: 504 VDVIFDDRKERPGVMFADMELIGIPHMVVIGEKNLDNGEIEYKNRRTGEKEMISKDKLLS 563

Query: 437 YASHRFSN 444
             + +  N
Sbjct: 564 VLNEKLGN 571


>gi|255692010|ref|ZP_05415685.1| threonine--tRNA ligase [Bacteroides finegoldii DSM 17565]
 gi|260622256|gb|EEX45127.1| threonine--tRNA ligase [Bacteroides finegoldii DSM 17565]
          Length = 646

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 149/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVLLEEAKKRDHRKIGKEMQLFM-FSETVGKGLPMWLPKGTALRLRLQEFLRRIQTRY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L+V SG Y  YGK+  +        +     P +     +I+++  
Sbjct: 289 DYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEIYKNFP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D    + +   D           +  +
Sbjct: 408 SIVFRSMNFQNFEAQISLR--------------DKVNREKYIGSDDNWEKAEQAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLPAKIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFEL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G+D + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  E++   L         DD  E+IG +    ++   P  +IVG K   + +V ++
Sbjct: 557 KFNEYAEQVKMYLKTHEIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M  EE     +    N
Sbjct: 617 RQGEGDKGTMKFEEFAKILNEEVQN 641


>gi|239947855|ref|ZP_04699608.1| threonyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|241116864|ref|XP_002401645.1| threonyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215493189|gb|EEC02830.1| threonyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|239922131|gb|EER22155.1| threonyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 635

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 151/439 (34%), Gaps = 40/439 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
            Y   + +   RD      +L L      + ++G+  W   G    + +   IR++  + 
Sbjct: 230 NYLFMLEEAEKRDHRKLGRELDLF--HFQEEAQGMVFWHDKGWSIYNIIEQYIRKKIRKN 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G IE+  P L    LW  SG +  +  +M    + +DK +   P +      IF+  IKS
Sbjct: 288 GYIEVKTPVLVDKSLWEASGHWKKFRDDMF-ALETDDKTLALKPMNCPCHVQIFKQGIKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +  L  R+E      G+MR R  +  DA+ F    + +  + +        
Sbjct: 347 YRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCAEEQITDETVSF-CKLLTE 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   I ++    P     S E                   D    +     +   
Sbjct: 406 VYKDFGFNDIKVKFSDRPEIRAGSDE-----------------VWDKAENALKEAVEKAG 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              ++     A Y    +     L D++    +     ++    F    +    + A++ 
Sbjct: 449 FTYTLNPGEGAFYGPKLEF---VLTDAIGRQWQCGTLQMD----FVLPER----LDASYI 497

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            A G+      +    +G++     ++   + G+  +W           + +        
Sbjct: 498 AASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW------ITPIQVAVATITSDLN 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++   L   G     +   ++I  +         P+  ++G +   + +V I+   
Sbjct: 552 DYALEVQKALIDNGVRTDINISPDKINYKIREFSNQKIPMIAVIGKQEKENKQVTIRRLG 611

Query: 423 TGIREDMSLEEVINYASHR 441
           T  +E +S+E++I      
Sbjct: 612 TTEQEVLSIEQLIALVKEE 630


>gi|317495533|ref|ZP_07953901.1| threonyl-tRNA synthetase [Gemella moribillum M424]
 gi|316914347|gb|EFV35825.1| threonyl-tRNA synthetase [Gemella moribillum M424]
          Length = 647

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 156/444 (35%), Gaps = 35/444 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           ++ + + +   RD      +L + T    +   G+  WLP G      +   I +++   
Sbjct: 230 QHLVRLQEARERDHRKLGKELGIFTT-SQKVGAGLPLWLPNGATIRRTIERYIVDKEVEL 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P L S DL++ SG ++ Y ++M    + + + M+  P +      ++++   S
Sbjct: 289 GYDHVYTPVLGSKDLYITSGHWEHYQEDMFPPMEMDHETMVLRPMNCPHHMMVYKNERHS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    ++ +  R E       ++    +  +     + P+  K  +          
Sbjct: 349 YRELPIRIAELGMMHRYESSGAVSGLQRVRGMTLNDAHIFVRPDQLKDEFKLTVGLIEEA 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDII 243
           +  LG+ +   R                  D   T+ +   D   +          D++ 
Sbjct: 409 YKDLGITNFSYRLS--------------YRDPENTEKYFDDDVMWNNAQQMLKETADELG 454

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    DV  E    ++ + + +S   ++    F    ++       + 
Sbjct: 455 LDYVEAEGEAAFYGPKLDVQVET---AIGKQETLSTIQLD----FLLPERF----ELEYI 503

Query: 304 GADGKDHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G DGK H   +   GI     R+VA ++E            +          I  ++   
Sbjct: 504 GEDGKAHRPVVIHRGIVSTMERMVAFLLEEYKGDLPTWLAPNQVRI------IPVNNDYH 557

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  ++I   L K G  V  DD  E++G +   A     P  +++G K V +  V ++  
Sbjct: 558 YDYSKEIMQELKKAGVKVAIDDRDEKLGYKIREAANKKIPYTLVIGDKEVENKGVNVRTF 617

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +  +++ S  E         +  
Sbjct: 618 GSHDQKEESFVEFKENILKEINER 641


>gi|289549510|ref|YP_003470414.1| Threonyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|289179042|gb|ADC86287.1| Threonyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
          Length = 638

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 146/442 (33%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           YF  + +   R+      +L L   M  + + G+  +L  GQ   + +   +RE Q +  
Sbjct: 232 YFEFLREAEARNHRKLGKQLKLF--MFSEEAPGMPFYLSNGQFVRNQMENFLREIQLKND 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW ESG +D Y + M      ++      P +      IF++ ++SY
Sbjct: 290 YDEVRTPLMMNQKLWEESGHWDHYHENM-YFTKVDENDYALKPMNCPGHMLIFKNELRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +     R E      G++R R F   DA+ F       K          L++
Sbjct: 349 KDLPLRMAEFGQVHRHEFSGALNGLLRVRTFCQDDAHIF-----IMKSQIKSEVEDILKL 403

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                            I       + +   T            +    S     D++  
Sbjct: 404 ID--------------YIYSVFGFTYSIELSTRPEDYLGELKLWNEAEQSLANVLDELGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +I E   A Y    DVH   + D+L  + + +   ++    F    K+      T+  
Sbjct: 450 KYTINEGDGAFYGPKIDVH---IKDALNRSHQCATVQLD----FQMPEKFD----LTYIN 498

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              +     +      G++     ++     G   +W           +NI         
Sbjct: 499 EQNEKERPVVLHRAIFGSLDRFFGILIEHFKGAFPLW------MAPVQVNIIGVSDNNTA 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K++  L      V  DD  E++G +   + +   P  +++G     ++ V  +    
Sbjct: 553 YVNKVFEALQNNNIRVVIDDRDEKLGKKIRESQMKKIPYTLVLGDHEQENNVVSARKYSH 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              E M ++  I        + 
Sbjct: 613 EDNELMDIQAFIAQLQEEVESK 634


>gi|293376470|ref|ZP_06622699.1| threonine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325842051|ref|ZP_08167588.1| threonine--tRNA ligase [Turicibacter sp. HGF1]
 gi|292644892|gb|EFF62973.1| threonine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325489773|gb|EGC92129.1| threonine--tRNA ligase [Turicibacter sp. HGF1]
          Length = 645

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 69/441 (15%), Positives = 160/441 (36%), Gaps = 32/441 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L IL+E   RD +    +L L T       +G+  WLP G K    +   I E +   G 
Sbjct: 230 LRILEERKERDHKKLGRELELFT-FSPLVGQGLPIWLPNGMKVRQQIERYITELEEDYGY 288

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             ++ P + S DL+  SG +  Y ++M    + +++ ++  P        ++++ ++SYR
Sbjct: 289 QHVATPVMGSVDLYRTSGHWAHYQEDMFVPMEMDNEELVLRPMSCPHHMMVYKTKLRSYR 348

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           +LP  + +  ++ R E       +     +        + P+  K  +++      R+  
Sbjct: 349 DLPIRYAEQVIQHRFEASGALTGLERVRAMTLTDSHLFVRPDQIKEEFSRCLELIHRVIK 408

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             G++    R                       + F      +           +     
Sbjct: 409 DFGVEINYYRLSLRDPENKE-------------KYFDDDQMWENAESMLRETLIENNIPF 455

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    D+   ++  +L  +  +S   ++    F    ++      T+    
Sbjct: 456 IEAEGEAAFYGPKLDI---QIKTALGHDITMSTIQLD----FLLPERFD----LTYVSET 504

Query: 307 GKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           G+     +   G IG      A +  ++ G   +W          +  I  ++Q   +  
Sbjct: 505 GEKVRPVVMHRGLIGTYERFMAYLIETYKGAFPLWLA-----PTQVTVIPVNNQYHLEYA 559

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +++   L K    +  D+  E++G +   +     P+ +++G K V++++V  +      
Sbjct: 560 KEVAKELRKYRVRLEIDEREEKMGYKIRESQTKKIPMSIVLGDKEVANNEVTFRRFGEQK 619

Query: 426 REDMSLEEVINYASHRFSNNR 446
            + + L+E +++     +  +
Sbjct: 620 TQTLPLKEFVHFLVEEIAERK 640


>gi|21230114|ref|NP_636031.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769896|ref|YP_244658.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|81304150|sp|Q4UQN5|SYP_XANC8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81860394|sp|Q8PCS4|SYP_XANCP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|21111643|gb|AAM39955.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575228|gb|AAY50638.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 564

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 116/250 (46%), Positives = 158/250 (63%), Gaps = 1/250 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYTPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF RLGL+   ++A+SG IGGD S EF V+A++GE  +       D+    E     
Sbjct: 181 YIRIFTRLGLEFRAVQADSGAIGGDASQEFHVIAESGEDSLAF-STGSDYAANVETASAA 239

Query: 241 DIISLNSIVE 250
                 +  E
Sbjct: 240 LPAPRPAAGE 249



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 2/182 (1%)

Query: 259 TSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +DV N    D +    +    RGIEVGH+F  G+KY+  + AT    +GK   ++MG Y
Sbjct: 381 VADVRNVVDGDRASDGGELRLTRGIEVGHVFQLGSKYAEALQATVLDENGKAAVMKMGCY 440

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVG 376
           GIG  R+VAA IE +HD  GI+WP  +AP+K+ +  I    D     A   +   L   G
Sbjct: 441 GIGISRIVAAAIEQNHDDAGIVWPAPMAPWKVVVCVINPKQDAQVAAAAGDLLEELIAAG 500

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            D   DD G + G+ FA  +LLG P +V+V  + ++    E + R     E++    + +
Sbjct: 501 IDAALDDRGLRPGAMFADMELLGVPHRVVVSERGLAAGTFEYRARTAESAENLDKAGLFS 560

Query: 437 YA 438
             
Sbjct: 561 RL 562


>gi|49474171|ref|YP_032213.1| threonyl-tRNA synthetase [Bartonella quintana str. Toulouse]
 gi|73919771|sp|Q6FZZ7|SYT_BARQU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49239675|emb|CAF26046.1| Threonyl-tRNA synthetase [Bartonella quintana str. Toulouse]
          Length = 658

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 155/445 (34%), Gaps = 39/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 233 KAYLHMLEEAEKRDHRRLGREMDLF--HFQEDGPGMIFWHQKGWKMFQNLISYMRRRLDD 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y + M +     +           P +      IF
Sbjct: 291 HQYSEVNAPQVLDKSLWELSGHWGWYKENMFKAIPAIEDWDDKCIYALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + +    N  
Sbjct: 351 KHSLKSYRDLPVRLAEFGVVHRYEPSGALHGLMRVRSFTQDDAHIFCTDEQLADECLNIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G K I ++  + P     S      A+          + M+  + +  T
Sbjct: 411 -DLILSTYADFGFKEISLKLSTRPEKRVGSDSLWDHAE----------NIMESVLKTIET 459

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            F   I   SI+    A Y    +     L D++    +     ++    F    ++   
Sbjct: 460 KFAGQIK-TSILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVD----FNLPERFD-- 509

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   D +      +     G+M     ++  +  G   +W         ++     
Sbjct: 510 --AFYIDKDSEKRQPVMIHRAIFGSMERFLGILIENFAGHMPLWLAPEQVVVAAIT---- 563

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  +KI ARL  VG     D   E+I  +     L   P+ ++ G +    + V
Sbjct: 564 --SEANEYAKKITARLKAVGLSAKSDLRNEKINYKIREHSLQKVPVILVCGKREAETNSV 621

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +  +S+EE I    + 
Sbjct: 622 SMRRLGSTDQVFLSIEETIEQLKNE 646


>gi|188993111|ref|YP_001905121.1| prolyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|226701356|sp|B0RVJ2|SYP_XANCB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167734871|emb|CAP53083.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 564

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 116/250 (46%), Positives = 158/250 (63%), Gaps = 1/250 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYTPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT       Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDADMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF RLGL+   ++A+SG IGGD S EF V+A++GE  +       D+    E     
Sbjct: 181 YIRIFTRLGLEFRAVQADSGAIGGDASQEFHVIAESGEDSLAF-STGSDYAANVETASAA 239

Query: 241 DIISLNSIVE 250
                 +  E
Sbjct: 240 LPAPRPAAGE 249



 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 2/182 (1%)

Query: 259 TSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +DV N    D +    +    RGIEVGH+F  G+KY+  + AT    +GK   ++MG Y
Sbjct: 381 VADVRNVVDGDRASDGGELRLTRGIEVGHVFQLGSKYAEALQATVLDENGKAAVMKMGCY 440

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVG 376
           GIG  R+VAA IE +HD  GI+WP  +AP+K+ +  I    D     A   +   L   G
Sbjct: 441 GIGISRIVAAAIEQNHDDAGIVWPAPMAPWKVVVCVINPKQDAQVAAAAGDLLEELIAAG 500

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            D   DD G + G+ FA  +LLG P +V+V  + ++    E + R     E++    + +
Sbjct: 501 IDAALDDRGLRPGAMFADMELLGIPHRVVVSERGLAAGTFEYRARTAESAENLDKAGLFS 560

Query: 437 YA 438
             
Sbjct: 561 RL 562


>gi|77463957|ref|YP_353461.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Rhodobacter
           sphaeroides 2.4.1]
 gi|123757748|sp|Q3J0X4|SYT_RHOS4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77388375|gb|ABA79560.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 646

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 151/443 (34%), Gaps = 45/443 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L    + + + G+  W P G +    +   +R    +
Sbjct: 234 KAYLHMLEEAAKRDHRKLGREMELF--HLQEEAPGMVFWHPNGWQIYRTLEDYMRGRLRQ 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIF 118
            G  E+  P +    LW  SG +++Y + M  +    + A         P +      ++
Sbjct: 292 AGYKEIRTPQVVDRKLWEASGHWEAYKENMFIVEVEEEHAKEKRINALKPMNCPCHVQVY 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F+  DA+ F  T +  +      
Sbjct: 352 NQGLKSYRDLPLRLAEFGSCHRYESSGSMHGLMRVRGFVQDDAHIFC-TEDQIESECAAF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++  LG  S  ++  + P     S E     +T                 +   
Sbjct: 411 IELLSSVYKDLGFDSFEIKLSTRPEVRIGSDEAWDKVET-----------------ALEN 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               + +   I     A Y    D    KL D++    +     ++       G      
Sbjct: 454 AIRKVGAAYEIDPGEGAFYGPKLDF---KLTDAIGRKWQCGTFQVDPNLPTRLG------ 504

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G DG  H    +    +G+      ++  ++ GK   W         S++    
Sbjct: 505 --AEYIGEDGAKHRPYMLHRAILGSFERFIGILIENYAGKLPFWLAPRQVVVASIV---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     ++ A L   G     D   E+I  +     +   P+ + +G + V    V
Sbjct: 559 --SDADPYVAEVVAALRARGVRAEADTRNEKINYKVREHSVGKVPVILAIGMQEVEARSV 616

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
            ++       E M L++V++  +
Sbjct: 617 SVRRLGETRTESMGLDQVVDQLA 639


>gi|126462800|ref|YP_001043914.1| threonyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
 gi|166225489|sp|A3PLC6|SYT_RHOS1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126104464|gb|ABN77142.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 646

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 151/443 (34%), Gaps = 45/443 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L    + + + G+  W P G +    +   +R    +
Sbjct: 234 KAYLHMLEEAAKRDHRKLGREMELF--HLQEEAPGMVFWHPNGWQIYRTLEDYMRGRLRQ 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIF 118
            G  E+  P +    LW  SG +++Y + M  +    + A         P +      ++
Sbjct: 292 AGYKEIRTPQVVDRKLWEASGHWEAYKENMFIVEVEEEHAKEKRINALKPMNCPCHVQVY 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F+  DA+ F  T +  +      
Sbjct: 352 NQGLKSYRDLPLRLAEFGSCHRYESSGSMHGLMRVRGFVQDDAHIFC-TEDQIESECAAF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++  LG  S  ++  + P     S E     +T                 +   
Sbjct: 411 IELLSSVYKDLGFDSFEIKLSTRPEVRIGSDEAWDKVET-----------------ALEN 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               + +   I     A Y    D    KL D++    +     ++       G      
Sbjct: 454 AIRKVGAAYEIDPGEGAFYGPKLDF---KLTDAIGRKWQCGTFQVDPNLPTRLG------ 504

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G DG  H    +    +G+      ++  ++ GK   W         S++    
Sbjct: 505 --AEYIGEDGAKHRPYMLHRAILGSFERFIGILIENYAGKLPFWLAPRQVVVASIV---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     ++ A L   G     D   E+I  +     +   P+ + +G + V    V
Sbjct: 559 --SDADPYVAEVVAALRARGVRAEADTRNEKINYKVREHSVGKVPVILAIGMQEVEARSV 616

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
            ++       E M L++V++  +
Sbjct: 617 SVRRLGETRTESMGLDQVVDQLA 639


>gi|152996360|ref|YP_001341195.1| prolyl-tRNA synthetase [Marinomonas sp. MWYL1]
 gi|189083502|sp|A6VXT1|SYP_MARMS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150837284|gb|ABR71260.1| prolyl-tRNA synthetase [Marinomonas sp. MWYL1]
          Length = 574

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 159/235 (67%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y    L++ P DA + SH+LM+R GMI Q SKG+Y+WLP G K    +  I+R+E
Sbjct: 1   MRASNYLFSTLRDAPTDAVVTSHQLMIRAGMIRQVSKGLYTWLPTGLKVFRKIENIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G++E+ +P +Q A+LW E+GR+  YG E+LRL DR+ +    GPTHEEV+T++ R+
Sbjct: 61  MEKAGSLEVMMPGVQPAELWQETGRWQKYGPELLRLQDRHGREYCLGPTHEEVITELARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREF MKDAYSF +  E  + +Y+ M  +
Sbjct: 121 ELTSYKQLPMNFFQIQTKFRDEVRPRFGVMRSREFCMKDAYSFHVGAESLQETYDIMHKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  +F R+GL   P+RA++G IGG  SHEF VLAD+GE  +  S    DF    E
Sbjct: 181 YCNVFDRIGLNYRPVRADTGSIGGAYSHEFHVLADSGEDDIAFSDS-SDFAANIE 234



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/194 (36%), Positives = 109/194 (56%), Gaps = 3/194 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +        +D+ N    D  P+ +   V  RGIEVGHIF  G +Y+  + AT    +GK
Sbjct: 380 ERDCAEFEVADIRNVVEGDPSPDGQGTIVIKRGIEVGHIFQLGQQYAEALKATVLDENGK 439

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              + MG YGIG  R+VAA IE + D KGI+WP+S+APF I+++ +     +  R  C++
Sbjct: 440 AQVMHMGCYGIGVSRIVAAAIEQNFDEKGILWPESIAPFDIAIVAMNYDKSEAVRTECDR 499

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA L   G DV  DD  E+ G +FA  +LLG P +++VG K +    +E K+R  G  E
Sbjct: 500 LYAELKAKGLDVLLDDRKERPGVKFADCELLGIPHRLVVGDKGLEKGTLEYKYRKAGDNE 559

Query: 428 DMSLEEVINYASHR 441
           D+++ + + +   +
Sbjct: 560 DIAIADAVEFILSK 573


>gi|34580760|ref|ZP_00142240.1| threonyl-tRNA synthetase [Rickettsia sibirica 246]
 gi|28262145|gb|EAA25649.1| threonyl-tRNA synthetase [Rickettsia sibirica 246]
          Length = 635

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 153/438 (34%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L      + ++G+  W   G    + +   IR++  + G
Sbjct: 231 YLLMLEEAEKRDHRKLGRELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG ++ +  +M    + +DK +   P +      IF+  IKSY
Sbjct: 289 YTEVKTPVLVDKSLWEASGHWEKFRDDMF-ALETDDKTLALKPMNCPCHVQIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    + +  + +        +
Sbjct: 348 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCAAEQITDETVSF-CKLLTEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S+E                   D    +     +    
Sbjct: 407 YKDFGFTDIKVKFSDRPEIRAGSNE-----------------VWDKAENALKEAVEQAGF 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             ++     A Y    +     L D++    +     ++    F    +    + A++  
Sbjct: 450 NYTLNPGEGAFYGPKLEF---VLTDAIGRQWQCGTLQMD----FVLPER----LDASYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           A G+      +    +G++     ++   + G+  +W           + I        D
Sbjct: 499 ASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW------LAPVQVAIATITSDLND 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G     +   ++I  +         P+  ++G +   + +V I+   T
Sbjct: 553 YALEVQKALIDNGVRTDVNISPDKINYKIREFSNQKIPMIAVIGKQEQENKQVAIRRLGT 612

Query: 424 GIREDMSLEEVINYASHR 441
             +E +S+E++I      
Sbjct: 613 TDQEVLSVEQLIAVVKEE 630


>gi|315918544|ref|ZP_07914784.1| prolyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059560|ref|ZP_07924045.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|313685236|gb|EFS22071.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|313692419|gb|EFS29254.1| prolyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 569

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEI SH+L+LR GMI + + G+Y++LPLG + L  V  IIREE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIISHQLLLRAGMIKKLASGLYTYLPLGFRTLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +P LQ A+LW ESGR++  G+EM+RL DR+ +  + GPT+EEV+TDI R+
Sbjct: 61  MDRAGSQELLMPVLQPAELWQESGRWNVMGEEMVRLKDRHQRDFVLGPTNEEVITDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ K RDE RPRFG+MRSREF+MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKVRDERRPRFGLMRSREFIMKDAYSFHTSQESLDEEFENMKNT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S       
Sbjct: 181 YTRIFERCGLKFRPVEADSGAIGGSGSQEFHVLAESGEDEIIYSDGCSYAA 231



 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 3/185 (1%)

Query: 259 TSDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+   K  +  P    K  SARGIE GHIF  G KYS  + A++    G+   + MG 
Sbjct: 382 VKDIRLVKAGEDCPRSNGKLHSARGIECGHIFKLGDKYSKALGASYLDEKGESKIMLMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +AA IE ++D  GIIWP ++AP+ + +I     +       EKIY +L+   
Sbjct: 442 YGIGVGRTMAAAIEQNYDEHGIIWPSALAPYLVDVIPANIKNAEQMQLAEKIYEQLNAEH 501

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            D   DD  E+ G +F  ADL+GFP +VI G K  +++ VE+K R TG   ++ ++E+I+
Sbjct: 502 LDAMLDDRDERPGFKFKDADLIGFPFKVICGKK-AAENIVELKIRKTGETFEIPVDEIIS 560

Query: 437 YASHR 441
                
Sbjct: 561 KIKDL 565


>gi|223997660|ref|XP_002288503.1| threonyl-trna synthetase [Thalassiosira pseudonana CCMP1335]
 gi|220975611|gb|EED93939.1| threonyl-trna synthetase [Thalassiosira pseudonana CCMP1335]
          Length = 592

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 156/441 (35%), Gaps = 39/441 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIRE 59
           ++ K +   ++E   RD  +   KL L +  I +    G+  W P G      +    +E
Sbjct: 163 KQLKLYKKRMEEAKKRDHRVLGKKLDLFS--IQEDAGGGLVFWHPKGSTVRRKIEDFWKE 220

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                    +  P + + DLW  SG YD Y + M    D  ++     P +      +F+
Sbjct: 221 AHIAQDYDIVYTPHIANLDLWKTSGHYDFYREGMFDQMDVENEVYQIKPMNCPFHCLMFK 280

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             I+SYR+LPF + ++   +R E      G+MR R F   DA+ F L  +      + + 
Sbjct: 281 DSIRSYRDLPFRWGELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQLQSEIVD-VL 339

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                I  R G     +   + P                      S    D    +    
Sbjct: 340 KLTKDILSRFGFNKYELMVSTRPEKS-----------------VGSDQIWDDATKALVGA 382

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            D++       E   A Y    D+   K+ D++    + S    +    F    ++ L  
Sbjct: 383 LDELGWEYGTDEGGGAFYGPKIDL---KIKDAIGRTWQCSTVQCD----FNLPERFDLEY 435

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                    K+  + +     G++     ++  +  G    W        + +       
Sbjct: 436 ---VSAEGKKERPIMVHRAIFGSIERFFGILVENTAGDLPFWLAPTQLKLLPVT------ 486

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D C+++  + +K+G  V  D   E++  Q   A+    P+  +VG K + +  + +
Sbjct: 487 DAVVDYCKEVAKKANKMGLRVEVDRGAERLAKQIRNAEQSRIPVMAVVGMKEMEEGTLAL 546

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           + R  G     +++++++   
Sbjct: 547 RSRKLGDLGSFAVDDLLSELK 567


>gi|255262353|ref|ZP_05341695.1| threonyl-tRNA synthetase [Thalassiobium sp. R2A62]
 gi|255104688|gb|EET47362.1| threonyl-tRNA synthetase [Thalassiobium sp. R2A62]
          Length = 649

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 145/440 (32%), Gaps = 45/440 (10%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      ++ L    + + + G   W P G      +   +R +Q   G 
Sbjct: 238 LHMLEEAAKRDHRKLGREMDLF--HMQEEAPGQVFWHPNGWTVYTELQDYMRRKQRAGGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSH 121
           +E++ P +    LW  SG ++ Y + M  +       R        P +      IF   
Sbjct: 296 VEVNTPQVVDRKLWEASGHWEKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVQIFNQG 355

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R E      G+MR R F   D + F    +  + +       
Sbjct: 356 LKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIFCREDQVQEET-AVYIEF 414

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+  LG +   ++    P     S E                   D    +  T   
Sbjct: 415 LSTIYKDLGFEKFRVKYSDRPDTRAGSDE-----------------VWDKAEQALLTATR 457

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +      +     A Y    +     L D++  + +     ++    F    +    + A
Sbjct: 458 NAGIEPEMNPGEGAFYGPKLEF---VLTDAIGRDWQCGTHQVD----FVLPER----LDA 506

Query: 301 TFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G   GK   V +    +G+      ++   H GK   W         +++       
Sbjct: 507 TYIGTDGGKHRPVMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVTTIV------S 560

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   +I   L   G     D   E+I  +     L   P+ + +G + V +  V ++
Sbjct: 561 DADDFAAEIVETLRSKGVRAEADTRNEKINYKVREHSLAKVPVILAIGQREVDERTVSVR 620

Query: 420 HRLTGIREDMSLEEVINYAS 439
                  + ++ +EV    +
Sbjct: 621 RLGEKQSKVIAFDEVAPQLA 640


>gi|326925418|ref|XP_003208912.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Meleagris gallopavo]
          Length = 470

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 155/457 (33%), Positives = 226/457 (49%), Gaps = 46/457 (10%)

Query: 3   RSKYFLPIL---------QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P+          +    +    SH+LML+ G+IH  S G Y  LP   ++++ +
Sbjct: 37  LSQLFQPLNLQVGGVAGCESQAAELSCRSHRLMLQGGLIHPASPGCYHLLPPAVRSMEKL 96

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I       G  ++++P+L SA+LW  SGR++  G E+ RLADR+ K    GPTHEE 
Sbjct: 97  IRLIDGAMRNIGGQKVNMPSLSSAELWRASGRWEQMGPELFRLADRHSKEYCLGPTHEEA 156

Query: 114 MT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T  +      SYR+LP   YQ+  KFRDE +PRFG++RSREF MKD Y+FD + E ++H
Sbjct: 157 VTELVAAHSNLSYRHLPLRLYQVTRKFRDEPKPRFGLLRSREFYMKDMYTFDTSEEAARH 216

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y  +F  LGL+ + +RA +G IGG  SHEF + AD GE ++           
Sbjct: 217 TYELVCRAYRSLFKHLGLRCVQVRAATGTIGGTASHEFQLPADIGEDRLVLCPA------ 270

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                   A    V  E+        K   +RGIEVGH FY GT
Sbjct: 271 --------------------GHFAANVEMVDEEQTACPTCGEKLTQSRGIEVGHTFYLGT 310

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F   + K    +MG YG+G  R++AA IE       I WP  +APF+   I
Sbjct: 311 KYSSVHNAVFYTPENKLQLAEMGCYGLGVTRILAASIEVLSTEDSIRWPSLIAPFQACFI 370

Query: 353 NIKA--HDQVCRDACEKIYARLSKV-----GCDVFWDDMGE-QIGSQFAVADLLGFPLQV 404
             K    ++      E++Y  +++      G DV  DD  +  IG +   A+ LG+P  V
Sbjct: 371 PPKKGSKEEEGAVLLEQLYDDVAEALPCLVG-DVVLDDRTQMTIGKRLKDANKLGYPYVV 429

Query: 405 IVGSKFVSDSKV-EIKHRLTGIREDMSLEEVINYASH 440
           I G +   D  V E+  + TG    ++ E VI   S 
Sbjct: 430 IAGRRACEDPPVFEVWDQSTGTVLYLTKEGVIELLSK 466


>gi|222151097|ref|YP_002560251.1| proline-tRNA ligase [Macrococcus caseolyticus JCSC5402]
 gi|254782906|sp|B9EBE4|SYP_MACCJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|222120220|dbj|BAH17555.1| proline-tRNA ligase [Macrococcus caseolyticus JCSC5402]
          Length = 568

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 119/319 (37%), Positives = 184/319 (57%), Gaps = 5/319 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DA+  SH+L+L+ GMI Q + G+YS+LP+ ++ L+ + +I+REE
Sbjct: 1   MKQSKMFIPTLREVPSDADSKSHQLLLKAGMIKQVASGVYSYLPIAKRVLNKIESIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                 +E+ +P LQ ++LW ESGR+ SYG E++R+ DR+ +    GPTHEE++T + R 
Sbjct: 61  MEAIDGVEILMPALQPSELWSESGRWQSYGAELMRMTDRHGREFALGPTHEEIITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF  T      +Y  M+ +
Sbjct: 121 ELKSYKKLPVTLFQIQNKFRDEKRPRFGLLRGREFIMKDAYSFHATEASLDETYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y +IF RL L+  P+ A+SG IGG  +HEF+ LA+ GE  + C  D  D+    E     
Sbjct: 181 YSKIFSRLNLQFRPVIADSGAIGGSHTHEFMALAEIGEDTI-CYTDGSDYAANIEKAEVV 239

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              +   +  +++E+   P   T+    + L   L E  +     ++   + +    +  
Sbjct: 240 YHPNKKHTEENVLEKVHTPGVKTAQQLADFLKRDLDEIVKSMIVKVDDQFVMFLIRGHHE 299

Query: 297 PMSATFKGADGKDHYVQMG 315
                 K   G +H     
Sbjct: 300 LNDIKVKSFFGTEHVEMAT 318



 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 116/226 (51%), Gaps = 3/226 (1%)

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVS 278
            ++      D    +   + DD   +N+ V+  +            E    +        
Sbjct: 342 DIYADNSVQDLNNLAVGANEDDYHYVNANVDRDFNVKAYGDFRFILEGEPAADGSGPVKF 401

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           A GIE+G +F  GTKYS  M+ATF    G+   + MG YGIG  R ++AVIE  +D KGI
Sbjct: 402 AEGIEIGQVFKLGTKYSESMNATFLNDQGRAEPMIMGCYGIGVSRTLSAVIEQHNDDKGI 461

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           IWP ++ P+++ +I++    +V ++  +++Y        +V +DD  E+ G +F  ADL+
Sbjct: 462 IWPTAITPYEVHIISVNPKQEVQKNLADQLYDTYRTQ-YEVLYDDRAERAGVKFNDADLI 520

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G P++V+VG +  +D  VE+K+R TG   ++ ++ +       +++
Sbjct: 521 GIPVRVVVGKQ-AADGIVEVKNRRTGDAVEVHIDNLQETIQSIYAS 565


>gi|76613805|ref|XP_585755.2| PREDICTED: hypothetical protein [Bos taurus]
 gi|297473149|ref|XP_002686423.1| PREDICTED: hypothetical protein [Bos taurus]
 gi|296489106|gb|DAA31219.1| hypothetical protein BOS_3571 [Bos taurus]
          Length = 475

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 148/457 (32%), Positives = 230/457 (50%), Gaps = 46/457 (10%)

Query: 3   RSKYFLPI-LQENP--------RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P  L+E+          D    S +LML+ G+IH  S G Y  LP   +A++ +
Sbjct: 42  LSRMFQPQKLREDQVLSLEGRSGDLTCKSQRLMLQMGLIHPASPGCYHLLPYTVRAMEKL 101

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++P+L  A+LW  + R+DS G+E+LRL DR+ K    GPTHEE 
Sbjct: 102 VRVIDQEMQTIGGQKVNMPSLSPAELWRATKRWDSMGRELLRLRDRHGKDYCLGPTHEEA 161

Query: 114 MT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T  +      SY+ LPF  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ 
Sbjct: 162 ITALVASQKTLSYKQLPFLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQL 221

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y+ +  +Y  +F+RLGL+ I ++A+ G IGG +SHEF +  D GE ++           
Sbjct: 222 TYSLVCDAYSSLFNRLGLRCIKVQADVGSIGGMVSHEFQLPVDVGEDRLVVCPSC----- 276

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                   A    + + +      +      +GIEVGH FY GT
Sbjct: 277 ---------------------HFSANMETLDSSRTNCPACQGPLTETKGIEVGHTFYLGT 315

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F    GK    +MG YG+G  R++AA IE       + WP  +AP+++ LI
Sbjct: 316 KYSSIFNAQFINVHGKPSLAEMGCYGLGVTRILAAAIEVLSTEDCVRWPGLLAPYQVCLI 375

Query: 353 NIKA--HDQVCRDACEKIYARLSKV-----GCDVFWDDMGE-QIGSQFAVADLLGFPLQV 404
             K    ++   +    +Y  +++      G +V  DD     IG++   A+ LG+P  +
Sbjct: 376 PPKKGSKEEAAAELAGDLYNHITEAVPQLQG-EVLLDDRTHLTIGNRLKDANKLGYPFVI 434

Query: 405 IVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASH 440
           I   + + D    E+  + TG    ++ E V+   S 
Sbjct: 435 IAAKRALDDPAHFEVWCQNTGEVVFLTREGVLELLSQ 471


>gi|194207413|ref|XP_001492689.2| PREDICTED: prolyl-tRNA synthetase 2, mitochondrial (putative)
           [Equus caballus]
          Length = 472

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 152/457 (33%), Positives = 227/457 (49%), Gaps = 46/457 (10%)

Query: 3   RSKYFLPI-LQEN--PR------DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P  L+E+  P       D    S +LML+ G+IH  S G Y  LP   +AL+ +
Sbjct: 39  LSRMFQPQNLREDQVPSLEGGSGDLTCKSQRLMLQVGLIHPASPGCYHLLPYTVRALEKL 98

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++S+P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE 
Sbjct: 99  VRVIDQEMRAIGGQKVSMPSLSPAELWRATNRWDLMGKELLRLRDRHGKEYCLGPTHEEA 158

Query: 114 MT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T  +      SY+ LPF  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ 
Sbjct: 159 VTALVASQKTLSYKQLPFLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAARQ 218

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y  +F RLGL  + ++A  G IGG +SHEF + AD GE Q            
Sbjct: 219 TYGLVCDAYSSLFARLGLPCVKVQAGVGSIGGTMSHEFQLPADVGEDQFAVCPSC----- 273

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                +  A    ++  +      +      +GIEVGH FY GT
Sbjct: 274 ---------------------SFSANVETLNLSQTNCPACQGPLTETKGIEVGHTFYLGT 312

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F    GK    +MG YG+G  R++AA IE       + WP  +AP+++ LI
Sbjct: 313 KYSSVFNAQFTNVHGKPSLAEMGCYGLGVTRILAAAIEVLSTEYCLRWPGLLAPYQVCLI 372

Query: 353 NIKA--HDQVCRDACEKIYARLSKV-----GCDVFWDDMGE-QIGSQFAVADLLGFPLQV 404
             K    ++V  +    +Y  +++      G +V  DD     IG++   A+  G+P  +
Sbjct: 373 PPKKGSKEEVATELAGHLYDHITEAVPQLRG-EVLLDDRTHLTIGNRLKDANKFGYPFVI 431

Query: 405 IVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASH 440
           I G + +      E+  + TG    ++ E V+   S 
Sbjct: 432 IAGKRALEAPAHYEVWCQNTGEVVFLTKEGVVGLLSQ 468


>gi|332809089|ref|XP_513427.3| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial [Pan
           troglodytes]
          Length = 475

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 141/439 (32%), Positives = 224/439 (51%), Gaps = 35/439 (7%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           LQ+   D    S +LML+ G+I+  S G Y  LP   +A++ +  +I +E    G  +++
Sbjct: 59  LQDKSDDLTCKSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVN 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLP 129
           +P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T  I      SY+ LP
Sbjct: 119 MPSLSPAELWQATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           F  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F++LG
Sbjct: 179 FLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNKLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L  + ++A+ G IGG +SHEF +  D GE ++                            
Sbjct: 239 LPFVKVQADVGTIGGTVSHEFQLPVDIGEDRLAICPRC---------------------- 276

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               +  A    +   ++     +      +GIEVGH FY GTKYS   +A F    GK 
Sbjct: 277 ----SFSANMETLDLSQMNCPACQGPLTKTKGIEVGHTFYLGTKYSSIFNAQFTNVCGKP 332

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEK 367
              +MG YG+G  R++AA IE       + WP  +AP++  LI  K    +Q   +   +
Sbjct: 333 TLAEMGCYGLGVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEQAASELIGQ 392

Query: 368 IYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHR 421
           +Y  +++       +V  DD     IG++   A+  G+P  +I G + + D    E+  +
Sbjct: 393 LYDHITEAVPQLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALEDPAHFEVWCQ 452

Query: 422 LTGIREDMSLEEVINYASH 440
            TG    ++ + V++  + 
Sbjct: 453 NTGEVAFLTKDGVMDLLTQ 471


>gi|161507864|ref|YP_001577828.1| theronyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
 gi|172048343|sp|A8YWE1|SYT_LACH4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160348853|gb|ABX27527.1| Theronyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
          Length = 644

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 155/441 (35%), Gaps = 36/441 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD       L L    +  +   G+  W+P G      V   I + +   G  
Sbjct: 232 RRQEIKERDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRAVERYIIDREVADGYQ 289

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + D +  SG +  Y  +M    D  D  M    P +      IF+ HI+SYR
Sbjct: 290 HVYTPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIFKHHIRSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++
Sbjct: 350 DLPLRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQTE-FAKILKLIMEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +     R                       + F + +  +          DD+   
Sbjct: 409 KDFDITDYYFRLS-------------YRDPKNTDKYFANDEMWEKSQKMLKGAMDDLGLD 455

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G 
Sbjct: 456 YVEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPDRF----GLTYVGK 504

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG++H    +    +G M    A +   + G    W        +    I  +++   + 
Sbjct: 505 DGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PVQAEIIPVNNEAHGEY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            EK+ A L+K G  V  DD  E++G +   +     P  +++G + +   KV ++   T 
Sbjct: 560 AEKVRAELAKRGFRVEVDDRNEKMGYKIRESQTQKVPYTLVLGDEEMKSGKVNLRRYGTD 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
                SL++ IN       + 
Sbjct: 620 EEISKSLDDFINEIDADVKSY 640


>gi|15892219|ref|NP_359933.1| threonyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
 gi|22654126|sp|Q92IX4|SYT_RICCN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15619354|gb|AAL02834.1| threonyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
          Length = 635

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 154/438 (35%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L      + ++G+  W   G    + +   IR++  + G
Sbjct: 231 YLLMLEEAEKRDHRKLGRELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG ++ +  +M    + +DK +   P +      IF+  IKSY
Sbjct: 289 YTEVKTPVLVDKSLWEASGHWEKFRDDMF-ALETDDKTLALKPMNCPCHVQIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    + +  + +        +
Sbjct: 348 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCAAEQITDETVSF-CKLLTEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S+E                   D    +     +    
Sbjct: 407 YKDFGFTDIKVKFSDRPEIRAGSNE-----------------VWDKAENALKEAVEQAGF 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             ++     A Y    +     L D++    +     ++    F    +    + A++  
Sbjct: 450 NYTLNPGEGAFYGPKLEF---VLTDAIGRQWQCGTLQMD----FVLPER----LDASYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           A G+      +    +G++     ++   + G+  +W           + I        D
Sbjct: 499 ASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW------LAPVQVAIATITSDLND 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G    ++   ++I  +         P+  ++G +   + +V I+   T
Sbjct: 553 YALEVQKALIDNGVRTDFNISPDKINYKIREFSNQKIPMIAVIGKQEQENKQVAIRRLGT 612

Query: 424 GIREDMSLEEVINYASHR 441
             +E +S+E++I      
Sbjct: 613 TDQEVLSVEQLIAVVKEE 630


>gi|271967410|ref|YP_003341606.1| threonyl-tRNA synthetase [Streptosporangium roseum DSM 43021]
 gi|270510585|gb|ACZ88863.1| threonyl-tRNA synthetase [Streptosporangium roseum DSM 43021]
          Length = 659

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 68/445 (15%), Positives = 144/445 (32%), Gaps = 37/445 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +    +   G+  + P G      +   +R  Q   G
Sbjct: 249 YLHMLEEAEKRDHRRLGAELDLFS-FPSELGSGLPVFHPKGGIIRKEMEDYMRRRQGEAG 307

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              ++ P +  + L+  SG    Y ++M    +         P +  +   IFR+  +SY
Sbjct: 308 YEFVNTPHITKSQLFETSGHLPWYAEDMFPPFELEGVEYRVKPMNCPMHNLIFRARGRSY 367

Query: 126 RNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +    +R E      G+ R R     D++ +    +        +    L +
Sbjct: 368 RELPLRLCEFGSVYRYEKSGVVHGLTRVRGMTQDDSHIYCTREQMVGE-IKSLLTFVLSV 426

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               GL    +   +     D S +FI                 D    +      +   
Sbjct: 427 LRDFGLSEFYLELST----RDDSDKFI-----------GDPADWDEATDALRQTALESGL 471

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y       + +  D++    ++S   +++                 ++ 
Sbjct: 472 ELVDDPGGAAFYGPKI---SVQAKDAIGRTWQLSTIQLDLNQP--------KRFELEYQA 520

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG       +     G++     V+    +     +P  +AP ++  I I    +    
Sbjct: 521 ADGSRQTPVMIHRALFGSIERFLGVLT---EHYAGAFPPWLAPVQVVGIPIA---EAHAS 574

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +  R  + G  +  D   +++  +   A     P  ++ G + +++  V  + R  
Sbjct: 575 YLQDVAKRARERGIRIEVDASDDRMQKKIRNAQKSKVPFMLLAGDEDIANGAVSFRFRNG 634

Query: 424 GIREDMSLEEVINYASHRFSNNRPV 448
             +  + ++E IN           V
Sbjct: 635 EQKNGVPVDEAINEIVDAIERRIQV 659


>gi|284919690|emb|CAX65467.1| hypothetical protein [Enterobacter hormaechei]
          Length = 662

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 141/436 (32%), Gaps = 39/436 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +     +   RD      +L L       ++ G   W P G     ++ A +R      G
Sbjct: 253 WLEKTAEAEKRDHRKLGRELDLF--HFQDNAPGAVFWHPRGWTIFQSLIAYMRSRHEVAG 310

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E++ P +    LW  SG +D+Y   M      + +     P +      +F+  IKSY
Sbjct: 311 YVEVNTPDVMDRSLWEISGHWDNYRDHMFTTQTEDGRNFALKPMNCPGAVSLFKYGIKSY 370

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G++R R F   DA+ F    +        +    L I
Sbjct: 371 RDLPVRLSEFGKVHRYEPSGSLHGLLRVRHFTQDDAHIFCTLQQVEGEC-KSILQLVLDI 429

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G + + ++  + P                      S    D    + +   +    
Sbjct: 430 YKQFGFEEVAIKLSTRPEKR-----------------MGSDADWDRLENALSASLEAQGL 472

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             S+     A Y    +     L D++  + +     +++                 +  
Sbjct: 473 QWSVNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVDMNLP--------ERFDIGYIA 521

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +     G++     ++    +      P  ++P +  ++ I         
Sbjct: 522 EDGSTKRPVMLHRALFGSLERFTGILL---EHYVGKLPAWLSPVQAVVMTITDK---QHH 575

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++   L K G     D   E+IG +     L   P  +IVG    + ++V ++ R  
Sbjct: 576 YAEQVLKALRKKGLRCEADLRNEKIGFKIREQTLARIPFLLIVGDAEENAARVTVRDRTG 635

Query: 424 GIREDMSLEEVINYAS 439
                + L E  +   
Sbjct: 636 RCMGTLLLNEAADAIK 651


>gi|221068963|ref|ZP_03545068.1| prolyl-tRNA synthetase [Comamonas testosteroni KF-1]
 gi|220713986|gb|EED69354.1| prolyl-tRNA synthetase [Comamonas testosteroni KF-1]
          Length = 580

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 117/237 (49%), Positives = 160/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +++ +  L+E P DAE+ SHKLM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKATQFLISTLKEAPADAEVVSHKLMMRAGMIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE ++P +Q A+LW E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAIETTMPVVQPAELWQETGRFEKMGPELLRIQDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + ++ SY  M  +
Sbjct: 121 EFKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDKDRDAAQISYQTMREA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL+   +RA+SG IGGDLS EF V+A TGE  +    +  D+    E  
Sbjct: 181 YKRIFDRFGLQYRAVRADSGAIGGDLSEEFQVIASTGEDAIVYCPN-SDYAANIEKA 236



 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/189 (36%), Positives = 106/189 (56%), Gaps = 3/189 (1%)

Query: 257 AATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+ N    D  P+   +    RGIE+GH+FY GTKYS  M ATF G +GK  + +M
Sbjct: 390 AVVADLRNVVAGDRSPDGAGELAIERGIEIGHVFYLGTKYSKAMDATFLGDNGKPQHFEM 449

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLS 373
           G YGIG  R+ AA +E +HD +G+IWPD++APF + +  I     +  +   EK+Y  L 
Sbjct: 450 GCYGIGVTRLPAAAVEQNHDERGMIWPDAIAPFTVVICPIGMGRSEAVKTEAEKLYGELL 509

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G DV  DD  E+ G+  A  +L+G P +V++G + + +  VE + R       ++  E
Sbjct: 510 ALGVDVILDDRDERPGAMLADWELIGVPHRVVLGDRGLKEGVVEYQQRRDTEATKLATNE 569

Query: 434 VINYASHRF 442
           V+ +   R 
Sbjct: 570 VLGHLKSRL 578


>gi|291299890|ref|YP_003511168.1| threonyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
 gi|290569110|gb|ADD42075.1| threonyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
          Length = 668

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 70/440 (15%), Positives = 135/440 (30%), Gaps = 35/440 (7%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L +    +   G+  + P G      + + +R+ Q   G 
Sbjct: 254 LRMLEEAAKRDHRKLGAQLDLFS-FPDELGSGLPVFHPKGGIIRQEMESYLRQRQKDAGY 312

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             ++ P +   +L++ SG    Y   M    +           +  +   I+RS  +SYR
Sbjct: 313 ELVNTPHITKENLFLTSGHLPYYADSMFPPMEFEGAEYYLKSMNCPMHNLIYRSRGRSYR 372

Query: 127 NLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    +    +R E      G+ R R   M DA+ +  T E        +    L + 
Sbjct: 373 ELPLRLSEFGSVYRYEKSGVVHGLTRVRGLTMDDAHIYC-TEEQRDEELKSLLKFVLELL 431

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL    +   +                             +    +     ++    
Sbjct: 432 RDYGLDDFYLELSTRGDSDKF---------------IGDPKDWEDATETLRRVAEESGLE 476

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                   A Y       + +  D++    ++S   I+      F  +YS          
Sbjct: 477 LVPDPGGAAFYGPKI---SVQAKDAIGRTWQMSTIQIDFNQPARFELEYS-------AAD 526

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             +   V +     G++     V+   + G    W   V    I +              
Sbjct: 527 GTRKQPVMIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQAVGIPI------RDENVPYL 580

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           ++  A+L   G     D   +++  +   A L   P  V+ G        V  ++R    
Sbjct: 581 DEFVAKLRAEGIRAEVDTSDDRMQKKVRNAQLQKIPFMVLAGDTDQEAGTVSFRYRDGSQ 640

Query: 426 REDMSLEEVINYASHRFSNN 445
           R  + LEE + + +    + 
Sbjct: 641 RNGVPLEEAVAHVTDVVRSR 660


>gi|68249330|ref|YP_248442.1| prolyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
 gi|229844600|ref|ZP_04464739.1| prolyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
 gi|81336245|sp|Q4QMG5|SYP_HAEI8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|68057529|gb|AAX87782.1| prolyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
 gi|229812314|gb|EEP48004.1| prolyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
          Length = 572

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 123/243 (50%), Positives = 160/243 (65%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E  +  
Sbjct: 181 YSNIFRRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAI 239

Query: 241 DII 243
            I 
Sbjct: 240 AIG 242



 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 4/188 (2%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K      RGIEVGHIF  G KYS  M AT +G DGK   + MG YG
Sbjct: 384 DLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVG 376
           IG  RVVA+ IE  HD +  I   D +APF ++++ +     +  +   E++Y  L   G
Sbjct: 444 IGVTRVVASAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMHKSEAVQKYAEELYRTLQSQG 503

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV +DD  E+ G  FA  +L+G P  V++G K + + ++E K+R TG +E +S +++++
Sbjct: 504 VDVIFDDRKERPGVMFADMELIGIPHMVVIGEKNLDNGEIEYKNRRTGEKEMISKDKLLS 563

Query: 437 YASHRFSN 444
             + +  N
Sbjct: 564 VLNEKLGN 571


>gi|323466103|gb|ADX69790.1| Threonyl-tRNA synthetase 1 [Lactobacillus helveticus H10]
          Length = 661

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 155/441 (35%), Gaps = 36/441 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD       L L    +  +   G+  W+P G      V   I + +   G  
Sbjct: 249 RRQEIKERDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYQ 306

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + D +  SG +  Y  +M    D  D  M    P +      IF+ HI+SYR
Sbjct: 307 HVYTPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIFKHHIRSYR 366

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++
Sbjct: 367 DLPLRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQTE-FAKILKLIMDVY 425

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +     R                       + F + +  +          DD+   
Sbjct: 426 KDFDITDYYFRLS-------------YRDPKNTDKYFANDEMWEKSQKMLKGAMDDLGLD 472

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G 
Sbjct: 473 YVEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPDRF----GLTYVGK 521

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG++H    +    +G M    A +   + G    W        +    I  +++   + 
Sbjct: 522 DGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PVQAEIIPVNNEAHGEY 576

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            EK+ A L+K G  V  DD  E++G +   +     P  +++G + +   KV ++   T 
Sbjct: 577 AEKVRAELAKRGFRVEVDDRNEKMGYKIRESQTQKVPYTLVLGDEEMKSGKVNVRCYGTD 636

Query: 425 IREDMSLEEVINYASHRFSNN 445
                SL++ IN       + 
Sbjct: 637 EEISKSLDDFINEIDADVKSY 657


>gi|296114661|ref|ZP_06833313.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
 gi|295978757|gb|EFG85483.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
          Length = 603

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 78/434 (17%), Positives = 141/434 (32%), Gaps = 40/434 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
              +   RD      ++ L        + G   W P G      + A +R  Q     +E
Sbjct: 196 RQEEAARRDHRRLGREMDLF--HFQPEAPGAVFWHPNGWTLFQTLLAYLRARQQAENYVE 253

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           ++ P +    LW  SG ++ +G+ M    +   +     P +      +FR  +KSYR+L
Sbjct: 254 INTPDIMDLSLWQASGHWEKFGENMFT-TETEGRTYALKPMNCPGGVQVFRHGLKSYRDL 312

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +     R E      G+MR R F   DA+ F  TPE  +    ++    L I+  
Sbjct: 313 PLRMAEFGKVHRFEPSGALHGLMRVRAFTQDDAHIFC-TPEQMEAETQRICHLVLSIYKD 371

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G   + ++    P     S E                   D    +     +      +
Sbjct: 372 FGFDDVRIKFSDRPEKRVGSDE-----------------IWDRSEEALRRGVEASGLSYT 414

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                 A Y    +     L D++  + +     +++               A + GADG
Sbjct: 415 RNPGEGAFYGPKLEF---VLRDAIGRDWQCGTVQVDLNLPQRLD--------AHYIGADG 463

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
             H    +     G++     ++   H G    W   V     ++           +  +
Sbjct: 464 DKHPPVMLHRALFGSLERFIGILLEHHAGHLPFWLAPVQVVVATIT------AAADNYAD 517

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L + G  V  D   E+I  +     L   P+ +IVG K      V I+   +   
Sbjct: 518 DLIKALRQRGVRVVPDLRNEKIAYKVREHSLAKVPVLLIVGKKEAEAGTVSIREYGSPDT 577

Query: 427 EDMSLEEVINYASH 440
             ++ E  I+  + 
Sbjct: 578 PTIATETAIDLLAS 591


>gi|222528807|ref|YP_002572689.1| threonyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
 gi|222455654|gb|ACM59916.1| threonyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
          Length = 647

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 160/443 (36%), Gaps = 33/443 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L + T       +G+   +P G K L  +   + +E+ + 
Sbjct: 233 EYLKKLEEAKKRDHNRIGRELEIFTT-SEVVGQGLPLLMPKGAKILQILQRFVEDEEEKR 291

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +    P +  +DL+  SG +D Y   M  + +  ++ +   P        I+ S  +S
Sbjct: 292 GYLLTKTPYMAKSDLYKISGHWDHYRDGMFVIEEDENEVLALRPMTCPFQFLIYNSKQRS 351

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + +    FR+E      G++R R+F + DA+     P+  +  +  +      
Sbjct: 352 YRDLPIRYSETSTLFRNESSGEMHGLIRVRQFTLSDAHIICR-PDQVEEEFKGVLDLIQY 410

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I   LG            I  D+ + F       + +   + +  +          D + 
Sbjct: 411 IMKILG------------IENDIWYRFSRWDPNNKEKYIDNPEAWEKTENDMKNILDKLG 458

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 +   A Y    D+  + ++    +   +    I+           +     T+ 
Sbjct: 459 INYKEAKGEAAFYGPKLDIQFKNVY---GKEDTIITIQIDFAL--------AERFDMTYV 507

Query: 304 GADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG+     +     IG      A++    +     +P  +AP +I +I +  +     
Sbjct: 508 DRDGQKKRPIIIHRSSIGCYERTLAMLI---EKYNGAFPLWLAPVQIRVIPVSDN---FN 561

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  + +   L + G  V  D   E +G +   A L   P  VIVG K   ++ V ++ R 
Sbjct: 562 EYAKNVARILKENGFRVEEDYRSETVGYKIRDAQLQKIPYMVIVGEKEQKENTVAVRDRK 621

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G     ++E+ I     +    
Sbjct: 622 KGDLGSFTIEDFIAMVKEKVDKK 644


>gi|19704979|ref|NP_602474.1| prolyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|81848323|sp|Q8RIE2|SYP_FUSNN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|19712883|gb|AAL93773.1| Prolyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 567

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 120/251 (47%), Positives = 164/251 (65%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIIRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S    ++    E    +
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD-GSEYAANIEKAVSE 239

Query: 241 DIISLNSIVEQ 251
            I      +++
Sbjct: 240 LINPPKEELKE 250



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 74/184 (40%), Positives = 102/184 (55%), Gaps = 2/184 (1%)

Query: 261 DVHNEKLFDSLP-ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           D+   ++ D+     K  SARGIE G IF  G KYS  M+AT+    GK  ++ MG YGI
Sbjct: 383 DIRKVRVGDNCITGGKLHSARGIECGQIFKLGDKYSKAMNATYLDEKGKTQFMLMGCYGI 442

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R +AA IE ++D  GIIWP S+AP+ + +I     ++V     EKIY  L +   DV
Sbjct: 443 GVTRTMAASIEQNNDENGIIWPVSIAPYIVDVIPANIKNEVQVSLAEKIYNELQEEKIDV 502

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E+ G +F  ADL+GFP +V+VG +   +  VE+K R TG   ++S  EVI    
Sbjct: 503 MLDDRDEKPGFKFKDADLIGFPFKVVVGKR-ADEGIVELKIRRTGETLEVSQNEVIAKIK 561

Query: 440 HRFS 443
               
Sbjct: 562 ELMR 565


>gi|145628390|ref|ZP_01784191.1| prolyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|145638474|ref|ZP_01794084.1| prolyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|144980165|gb|EDJ89824.1| prolyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|145272803|gb|EDK12710.1| prolyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|309751606|gb|ADO81590.1| Prolyl-tRNA synthetase [Haemophilus influenzae R2866]
 gi|309973773|gb|ADO96974.1| Prolyl-tRNA synthetase [Haemophilus influenzae R2846]
          Length = 572

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 123/243 (50%), Positives = 161/243 (66%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR+D YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWDQYGPELLRFEDRGNRNFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFIMKDAYSFHTTQESLQATYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF+RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E  +  
Sbjct: 181 YSNIFNRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAI 239

Query: 241 DII 243
            I 
Sbjct: 240 AIG 242



 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 106/189 (56%), Gaps = 4/189 (2%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K      RGIEVGHIF  G KYS  M AT +G DGK   + MG YG
Sbjct: 384 DLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVG 376
           IG  RVVA+ IE  HD +  I   D +APF ++++ +     +  +   E++Y  L   G
Sbjct: 444 IGVTRVVASAIEQHHDERGIIWPSDEIAPFTVAIVPMNMHKSEAVQKYAEELYRTLQSQG 503

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV +DD  E+ G  FA  +L+G P  V++G K + + ++E K+R TG +E +S +++++
Sbjct: 504 VDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLENGEIEYKNRRTGEKEMISKDQLLS 563

Query: 437 YASHRFSNN 445
             + +  N 
Sbjct: 564 VLNEKLGNR 572


>gi|300087925|ref|YP_003758447.1| threonyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527658|gb|ADJ26126.1| threonyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 584

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 147/444 (33%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD    + +L L          G+  + P   +    V    R+     
Sbjct: 170 EYLTSLAEAEARDHRRINKQLNLFVT-PEDVGGGLVIYGPKAGRIRTTVEEFWRKAHYDH 228

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +  ++LW  SG   +Y   M    D + +     P +       ++S ++S
Sbjct: 229 GYELLYTPHIGRSNLWETSGHLQNYRDIMYSPMDIDGQDYYVKPMNCPFHILFYKSQMRS 288

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + ++   +R E      G++R R F   DA+    TPE  +   +++      
Sbjct: 289 YRDLPLRWAELGTVYRYERSGVLHGLLRVRGFTQDDAHIIC-TPEQIETEIDEVLRFSFE 347

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   + +   + P                  +   +         +     D   
Sbjct: 348 MWRTFGFTDLKLFLATRP-----------------EKAIGTDLQWQQASDALRRVMDARG 390

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              S+ E   A Y    D+   K+ D L    +++    +    F    ++ +     + 
Sbjct: 391 LEYSLDEGGGAFYGPKIDI---KVRDVLGREWQMTTIQFD----FNLPERFDMV----YT 439

Query: 304 GADGKDH-YVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G DG++H    +    +G+  R    +IE       +                       
Sbjct: 440 GQDGQEHRPYMVHRALLGSWERFFGLLIEHYGGAFPVWLHPEQVAVLPIA-------DRH 492

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  ++I A+L K G  V  DD  E +  +   A L   P  V++G K +    + ++ R
Sbjct: 493 LEYAQEITAKLKKAGVRVALDDRSETVNMKIRQAQLDKIPYIVVIGDKELEKGTLAVRLR 552

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
               +  +   + +          
Sbjct: 553 TGQQKFGVPPNDFVTLIRQVIEER 576


>gi|241889888|ref|ZP_04777186.1| threonyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
 gi|241863510|gb|EER67894.1| threonyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
          Length = 647

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 157/444 (35%), Gaps = 35/444 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           ++ + + +   RD      +L + T    +   G+  WLP G      +   I +++   
Sbjct: 230 QHLVRLQEARERDHRKLGKELGIFTT-SQKVGAGLPLWLPNGATIRRTIERYIVDKEVEL 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + S DL++ SG ++ Y ++M    + + + M+  P +      ++++   S
Sbjct: 289 GYDHVYTPIMGSKDLYITSGHWEHYQEDMFPPMEMDHETMVLRPMNCPHHMMVYKNERHS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    ++ +  R E       ++    +  +     + P+  K  +          
Sbjct: 349 YRELPIRIAELGMMHRYEASGAVSGLQRVRGMTLNDAHIFVRPDQLKDEFKLTVGLIEEA 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDII 243
           +  LG+K+   R                  D   T+ +   D   +          D++ 
Sbjct: 409 YKDLGIKNFSYRLS--------------YRDPENTEKYFDDDAMWNNAQQMLKETADELG 454

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    DV  E    ++ + + +S   ++    F    ++       + 
Sbjct: 455 LDYVEAEGEAAFYGPKLDVQVET---AIGKQETLSTIQLD----FLLPERF----ELEYI 503

Query: 304 GADGKDHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G DGK H   +   GI     R+VA ++E            +          I  ++   
Sbjct: 504 GEDGKAHRPVVIHRGIVSTMERMVAFLLEEYKGDLPTWLSPNQVRI------IPVNNDYH 557

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  ++I   L K G  V  DD  E++G +   A     P  +++G K V +  V ++  
Sbjct: 558 YDYSKEIMQELKKAGVKVAIDDRDEKLGYKIREAASKKIPYTLVIGDKEVENRNVNVRTF 617

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +  +++ S  E         +  
Sbjct: 618 GSLNQKEESFAEFKENILREINER 641


>gi|254477067|ref|ZP_05090453.1| threonyl-tRNA synthetase [Ruegeria sp. R11]
 gi|214031310|gb|EEB72145.1| threonyl-tRNA synthetase [Ruegeria sp. R11]
          Length = 648

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 87/445 (19%), Positives = 154/445 (34%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W P G +    +   +R  Q+R
Sbjct: 234 KAHLTMLEEAAKRDHRKLGKEMGLF--HMQEEAPGQVFWHPNGWRIYTQLQDYMRRMQDR 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-----GPTHEEVMTDIF 118
            G +E++ P +    LW +SG +D Y + M  +    D A         P +      +F
Sbjct: 292 DGYVEVNTPQVVDRKLWEKSGHWDKYQENMFIVEVDEDHAREKAVNALKPMNCPCHVQVF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D + F    + +  +  K 
Sbjct: 352 NQGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDGHIFCAEDQITSET-AKF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                +++  LG  +  ++  + P     S E     +    +  C     DF I     
Sbjct: 411 IAFLSKVYADLGFHNWTIKLSTRPEKRIGSDETWDHMEQALGE-ACKAAGYDFEI----- 464

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                      +E   A Y    +     L D++  N +     ++              
Sbjct: 465 -----------LEGEGAFYGPKLEF---TLTDAIGRNWQCGTLQVDANLP--------ER 502

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + ATF G DG  H    +    +G+      ++   H GK   W         S+     
Sbjct: 503 LEATFIGQDGAKHRPVMLHRACLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIT---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++  +L   G     D   E+I  +     +   P+ + VG++ V +  V
Sbjct: 559 --SEADDYVLEVVEQLKAAGVRAEADMRNEKINYKVREHSVGKVPVILAVGAREVEERTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++       +  SLE V    +  
Sbjct: 617 SVRRLGEKQTKVESLETVTKTLATE 641


>gi|91215264|ref|ZP_01252236.1| threonyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
 gi|91186869|gb|EAS73240.1| threonyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
          Length = 648

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 153/436 (35%), Gaps = 36/436 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L      +   G+  WLP G    D +   +++ Q   G   +  P
Sbjct: 238 AKKRDHRKLGKELKLFA-FSQKVGLGLPLWLPKGAALRDRLEKFLKDAQENAGYQPVVSP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L++ SG +  YG++  +     ++ +  +  P +     +I+ +   SYR+LP 
Sbjct: 297 HIGQKELYMTSGHFQKYGEDSFQPIKTPQDGEEYLLKPMNCPHHCEIYNAQTWSYRDLPQ 356

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + +    +R E      G+ R R F   DA+ F  TPE     + K+    L +F  LG
Sbjct: 357 RYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPEQLDEEFKKVIDLVLYVFGSLG 415

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            ++   +                      ++   S +       +     ++      IV
Sbjct: 416 FENFTAQVSLRD-------------PENPSKYIGSDENWKKAESAILNAAEEKGLTYKIV 462

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           +   A Y    D     + D+L    ++    ++                  +KG+D + 
Sbjct: 463 KGEAAFYGPKLDFM---VKDALGRQWQLGTIQVDYNLP--------ERFELEYKGSDNEM 511

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H    +     G++    A++     G   +W        +S+       +   +  +K+
Sbjct: 512 HRPVMIHRAPFGSLERFIAILIEHTGGNFPLWLMPEQATILSI------SEKYENYSKKV 565

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            + L K      +D+ GE +G +   A++   P  +IVG   V +  V ++         
Sbjct: 566 LSLLKKHEIRATFDNRGETMGKKIREAEMNKTPYMLIVGESEVENETVSVRKHGGEDLGQ 625

Query: 429 MSLEEVINYASHRFSN 444
           MS+       + +   
Sbjct: 626 MSITSFAEIINAQIDK 641


>gi|254360942|ref|ZP_04977088.1| proline--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|261492183|ref|ZP_05988753.1| proline--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261494250|ref|ZP_05990749.1| proline--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153092421|gb|EDN73484.1| proline--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|261310102|gb|EEY11306.1| proline--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261312163|gb|EEY13296.1| proline--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 571

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 125/243 (51%), Positives = 161/243 (66%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G K L  V  IIREE
Sbjct: 1   MRTSQYLFSTLKEMPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIKVLKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LWVESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R 
Sbjct: 61  MNKGGAIEVLMPVVQPAELWVESGRWNDYGPELLRFKDRGERDFVLGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDAYSFHTTQESLQETYDVMYQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  V       DF    E  +  
Sbjct: 181 YSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAV 239

Query: 241 DII 243
            + 
Sbjct: 240 AVG 242



 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +        +D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 364 DGKHYFNVNWERDVAVPEIADLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 423

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
            AT +G DGK   + MG YGIG  RVVAA IE  +D +  I   D +APF ++++ +   
Sbjct: 424 KATVQGEDGKPLVMTMGCYGIGVTRVVAAAIEQHYDDRGIIWPCDEMAPFTVAIVPMNMH 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++YA L   G +V +DD  E+ G  FA  +L+G P  V++G K + + ++
Sbjct: 484 KSEKVQAFAEELYANLKAQGVEVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLENGEI 543

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K+R +G ++ ++ E ++ +      
Sbjct: 544 EYKNRRSGEKQMIAKESLLAFLKANVK 570


>gi|307297853|ref|ZP_07577659.1| prolyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306917113|gb|EFN47495.1| prolyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 580

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 106/239 (44%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+E P DA++ S KL++R G + + + GIYS+LPLG + L  +  I+R+E
Sbjct: 1   MRFSQLYAPTLKEAPADADLISIKLLVRGGFVRKVAAGIYSFLPLGFRVLKKIEDIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G+ E+ +P +Q A+LW E+GR+D YG EM+R+ DR+++    GPTHEE++T + R+
Sbjct: 61  MNAIGSQEILMPIIQPAELWHETGRWDDYGPEMMRMQDRHERFFTLGPTHEEIITHLLRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP + YQI +K+RDE+RPRFG+MRSREFLMKDAYSF  +      +Y + + +
Sbjct: 121 ELNSYKQLPVSLYQIAMKYRDEIRPRFGLMRSREFLMKDAYSFHGSWSSLDETYKQFYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y +I  R+GL+ + + A+SG IGG+ SHEF VLAD GE+ +        +    E  ++
Sbjct: 181 YSKILQRIGLEFLVVEADSGAIGGNESHEFNVLADYGESTLLYCDCG--YAASDEKAEY 237



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/196 (34%), Positives = 100/196 (51%), Gaps = 7/196 (3%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+      D  P+      SA+GIEVGHIF  GTKYS  M+       G   +  MG 
Sbjct: 380 WHDLKMVTEGDPCPKCGAPMKSAKGIEVGHIFKLGTKYSEKMNGYVTDEKGNSIHYIMGC 439

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YG G  R ++A++E  HD  GIIWP +VAPF I +  +   D +  +   ++Y  LS+ G
Sbjct: 440 YGWGVSRTISAIVEQLHDENGIIWPLAVAPFDIIVTAVNIKDPIVSEKSIQLYDILSEAG 499

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL----E 432
            +V  DD     G +F  ADL+G P+++ +G K ++   VE+K R      ++S+    +
Sbjct: 500 FEVLLDDREISPGMKFKDADLIGIPVRITLGKK-LAQGIVEVKPRTEKKPLEVSIVDGFD 558

Query: 433 EVINYASHRFSNNRPV 448
            ++       SN RPV
Sbjct: 559 TLLEEIKKELSNYRPV 574


>gi|228992547|ref|ZP_04152474.1| Prolyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228998595|ref|ZP_04158182.1| Prolyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|228761063|gb|EEM10022.1| Prolyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|228767181|gb|EEM15817.1| Prolyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 566

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 125/267 (46%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LPLG K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPLGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P LQ+A+LW ESGR+ SYG E++R+ DRND+    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPALQAAELWQESGRWYSYGSELMRMKDRNDREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+ L+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMALSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ASYAKSDEAEKALEKVATPDQKAIEEV 266



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 104/190 (54%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+        RGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTIRFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAAV E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAVAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREVGETIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R T    ++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATNESAEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LHAYIANILK 566


>gi|254719143|ref|ZP_05180954.1| threonyl-tRNA synthetase [Brucella sp. 83/13]
 gi|265984137|ref|ZP_06096872.1| threonyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306838428|ref|ZP_07471273.1| threonyl-tRNA synthetase [Brucella sp. NF 2653]
 gi|264662729|gb|EEZ32990.1| threonyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306406568|gb|EFM62802.1| threonyl-tRNA synthetase [Brucella sp. NF 2653]
          Length = 658

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 152/445 (34%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 233 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLRIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 411 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 457

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 458 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 508

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 509 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 562

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 563 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 620

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 621 NMRRLGSRDQESMTLDEAIARLCEE 645


>gi|229006095|ref|ZP_04163783.1| Prolyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228755171|gb|EEM04528.1| Prolyl-tRNA synthetase [Bacillus mycoides Rock1-4]
          Length = 566

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 125/267 (46%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LPLG K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPLGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P LQ+A+LW ESGR+ SYG E++R+ DRND+    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPALQAAELWQESGRWYSYGSELMRMKDRNDREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+ L+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMALSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ASYAKSDEAEKALEKVATPDQKAIEEV 266



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 104/190 (54%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+        RGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTIRFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAAV E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAVAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREVGETIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R T    ++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATNESAEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LHAYIANILK 566


>gi|328861737|gb|EGG10840.1| hypothetical protein MELLADRAFT_42095 [Melampsora larici-populina
           98AG31]
          Length = 486

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 151/478 (31%), Positives = 249/478 (52%), Gaps = 57/478 (11%)

Query: 3   RSKYFLPILQ-ENPRDAEI--ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           +S  + P ++ +   D  I    H L+LR G + Q S GI+++LP   + L  V  I+RE
Sbjct: 32  QSNRYSPTIKTQAQSDTSISSPGHHLLLRAGFLRQSSTGIWNFLPNAIRVLKKVEDIVRE 91

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E  R GA E+S+  LQ++ LW  SGR+++ GKE+ RL+DR D  ++  PTHEE +T + +
Sbjct: 92  EMERIGASEVSLSHLQTSSLWKASGRWNTAGKELFRLSDRKDAHLLLAPTHEEEITQLVK 151

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             + S + LP   + I  K+RDELRPR G++RSREF+MKD Y+FDL    +  +Y+ +  
Sbjct: 152 LDVNSSKQLPVRLFHIGRKYRDELRPRAGLLRSREFIMKDLYTFDLDRTKALETYSAVQG 211

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +Y +I  R+G+  +   A+SG IGG  SHE+   + +GE  V       D+    E    
Sbjct: 212 AYEKILKRIGIPFVVAEADSGAIGGSQSHEYQFESPSGEDTVIKCTKC-DYIANVELAK- 269

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                        +      SDV+  +    L      S++ IEV H FY GTKYS  +S
Sbjct: 270 -------------SVLVPPLSDVNALRCRSPLG-----SSKAIEVAHTFYLGTKYSSSLS 311

Query: 300 ATFKGAD-----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS-LIN 353
           AT+K +D      K++ ++MG +GIG  R++ A+ E SH   G+ WP +VAPFK+  +I 
Sbjct: 312 ATYKISDPKTGLQKENPLEMGCFGIGISRLMGAIAECSHTETGLRWPINVAPFKVCIIIP 371

Query: 354 IKAHDQVCRDACEKIYA--------------RLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           ++ +D    D  + +                 L     +V  DD  ++IG +   ADL+G
Sbjct: 372 MQENDAGSSDLIKSVAQIIGREVESIKTKVGELKG---EVLIDDRIQRIGWKLMDADLVG 428

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTG---IREDMSLEE--------VINYASHRFSNNR 446
           +P+ +++G++++ +  +EI+    G     E++ L +        + +      + ++
Sbjct: 429 YPILIVLGNRWIKNQVIEIRDVKNGKVIELENVGLVDGKLVDQGRLSDTIGSLINESK 486


>gi|291398822|ref|XP_002716008.1| PREDICTED: prolyl-tRNA synthetase (mitochondrial)(putative)
           [Oryctolagus cuniculus]
          Length = 478

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 151/455 (33%), Positives = 231/455 (50%), Gaps = 44/455 (9%)

Query: 3   RSKYFLPI-LQENPR--------DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P  L+E+          +    S +LML+ G+I   S G Y  LP   +AL+ +
Sbjct: 45  LSRIFQPQNLREDQALSLESRSGELTCKSQRLMLQVGLILPASPGCYHLLPYTVRALEKL 104

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++S+P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEEV
Sbjct: 105 VRLIDQEMQAVGGQKVSLPSLSPAELWRATQRWDLMGKELLRLQDRHGKEYCLGPTHEEV 164

Query: 114 MT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T  +      SY+ LPF  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ 
Sbjct: 165 VTALVASQKNLSYKQLPFLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAARQ 224

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y  +  +Y  +F RLGL+ I  +A+ G IGG +SHEF +  + GE Q+           
Sbjct: 225 TYGLVCDAYCSLFSRLGLQVIKAQADVGSIGGTMSHEFQLPVEVGEDQLAVCPSC----- 279

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                   A    + + +    + +      RGIEVGH FY GT
Sbjct: 280 ---------------------GFSANVETLDSSQTNCPVCQGPLTETRGIEVGHTFYLGT 318

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS    A F  A+GK    +MG YG+G  R++AA IE       + WP  +AP+++ LI
Sbjct: 319 KYSSIFRAQFTNAEGKPCLAEMGCYGLGVSRILAAAIEVLATEDSVRWPGLLAPYQVCLI 378

Query: 353 NIKA--HDQVCRDACEKIYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
             K    +    +  E++Y  +++       ++  DD     IGS+   AD LG+P  V+
Sbjct: 379 PPKKGSKEAAATELTERLYDHIAEAVPQLHGELVLDDRTHLTIGSRLKDADKLGYPFVVV 438

Query: 406 VGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYAS 439
            G + + +    E+  + TG +  ++ E V++  +
Sbjct: 439 AGKRALEEPACFEVWCQNTGEQLFLTREGVLDLLT 473


>gi|326318382|ref|YP_004236054.1| prolyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375218|gb|ADX47487.1| prolyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 581

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 116/237 (48%), Positives = 157/237 (66%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFVSTLKEAPADAEVVSHKLMTRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+ W E+GR+D  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVEVTMPVVQPAEFWQETGRFDKMGPELLRIRDRHGRDFVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD     +K SY  M  +
Sbjct: 121 ELRSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQAAAKASYQVMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE  +       D+    E  
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYCPQ-SDYAANMEKA 236



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 109/189 (57%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ K      RGIEVGH+FY GTKYS  M+ATF G DGK  + +MG
Sbjct: 392 VVADLRNVVAGDPSPDGKGALAIERGIEVGHVFYLGTKYSRAMNATFLGEDGKPAFFEMG 451

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
            YGIG  R+ AA IE +HD +GIIWPD++APF + +  I     +  R A EK++A L  
Sbjct: 452 CYGIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVVCPIGMDRSEEVRAAAEKLHADLLA 511

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD GE+ G+ FA  +L+G P +V++  + + + +VE +HR       ++  ++
Sbjct: 512 AGVDVILDDRGERPGAMFADWELIGVPHRVVLSDRGLKEGQVEYQHRRDAAATKVASADI 571

Query: 435 INYASHRFS 443
             +   R  
Sbjct: 572 FAFIKDRIK 580


>gi|256159790|ref|ZP_05457533.1| threonyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|256255048|ref|ZP_05460584.1| threonyl-tRNA synthetase [Brucella ceti B1/94]
 gi|261222239|ref|ZP_05936520.1| threonyl-tRNA synthetase [Brucella ceti B1/94]
 gi|265998203|ref|ZP_06110760.1| threonyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|260920823|gb|EEX87476.1| threonyl-tRNA synthetase [Brucella ceti B1/94]
 gi|262552671|gb|EEZ08661.1| threonyl-tRNA synthetase [Brucella ceti M490/95/1]
          Length = 658

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 151/445 (33%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 233 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLRIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 411 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 457

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++    F         
Sbjct: 458 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVD----FNLP----KR 506

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 507 FGAFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 562

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 563 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 620

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 621 NMRRLGSRDQESMTLDEAIARLCEE 645


>gi|159043329|ref|YP_001532123.1| threonyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
 gi|189083606|sp|A8LQX9|SYT_DINSH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157911089|gb|ABV92522.1| threonyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
          Length = 654

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 149/442 (33%), Gaps = 45/442 (10%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      ++ L    + + + G   W P G      +   +R  Q   G 
Sbjct: 237 LHMLEEAAKRDHRKLGREMNLF--HMQEEAPGQVFWHPNGWTVYTTLQDYMRRRQRENGY 294

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-----GPTHEEVMTDIFRSH 121
           +E++ P +    LW  SG +D Y + M  +    + A         P +      ++   
Sbjct: 295 VEVNTPQVVDRKLWEASGHWDKYQENMFIVEVDEEHAREKAINALKPMNCPCHVQVYNQG 354

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R E      G+MR R F   DA+ F  T +  +    +    
Sbjct: 355 LKSYRDLPLRMAEFGACNRYEPSGALHGLMRVRGFTQDDAHIFC-TEDQIQDETARFIRM 413

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+  LG +S  ++  + P                      S    D    +      
Sbjct: 414 LSTIYRDLGFESFDIKFSTRPEVR-----------------AGSDAVWDKAEAALEAAIR 456

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     +     A Y    D    KL D++    ++     +    F    +    + A
Sbjct: 457 TVTDDFELDPGEGAFYGPKLDF---KLTDAIGREWQLGTFQAD----FVLPER----LDA 505

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           T+ G DG  H    +    +G+      ++  +  GK   W         S+I       
Sbjct: 506 TYIGEDGAKHRPVMLHRAILGSFERFLGILIENFAGKLPFWLAPRQVVVASII------S 559

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++ A L++ G     D   E+I  +     +   P+ + VG + + +  V ++
Sbjct: 560 EADDYVREVVAALTRAGIRAEADIRNEKINYKVREHSVGKVPVILAVGRREMEERTVTLR 619

Query: 420 HRLTGIREDMSLEEVINYASHR 441
                    + L+ ++   +  
Sbjct: 620 RLGEKQTSVVGLDALVADLAAE 641


>gi|23501949|ref|NP_698076.1| threonyl-tRNA synthetase [Brucella suis 1330]
 gi|161619021|ref|YP_001592908.1| threonyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163843337|ref|YP_001627741.1| threonyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|254704361|ref|ZP_05166189.1| threonyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|254710151|ref|ZP_05171962.1| threonyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|254714150|ref|ZP_05175961.1| threonyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|254716792|ref|ZP_05178603.1| threonyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|256031646|ref|ZP_05445260.1| threonyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|256061156|ref|ZP_05451310.1| threonyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|256369496|ref|YP_003107004.1| threonyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|260168776|ref|ZP_05755587.1| threonyl-tRNA synthetase [Brucella sp. F5/99]
 gi|260566393|ref|ZP_05836863.1| threonyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|261218590|ref|ZP_05932871.1| threonyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261317705|ref|ZP_05956902.1| threonyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261321913|ref|ZP_05961110.1| threonyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|261325162|ref|ZP_05964359.1| threonyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261755033|ref|ZP_05998742.1| threonyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|261758257|ref|ZP_06001966.1| threonyl-tRNA synthetase [Brucella sp. F5/99]
 gi|265988738|ref|ZP_06101295.1| threonyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|38258386|sp|Q8G0L8|SYT_BRUSU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083599|sp|A9M582|SYT_BRUC2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083600|sp|B0CGM0|SYT_BRUSI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|23347895|gb|AAN29991.1| threonyl-tRNA synthetase [Brucella suis 1330]
 gi|161335832|gb|ABX62137.1| threonyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163674060|gb|ABY38171.1| threonyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|255999656|gb|ACU48055.1| threonyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|260155911|gb|EEW90991.1| threonyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|260923679|gb|EEX90247.1| threonyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261294603|gb|EEX98099.1| threonyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|261296928|gb|EEY00425.1| threonyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261301142|gb|EEY04639.1| threonyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261738241|gb|EEY26237.1| threonyl-tRNA synthetase [Brucella sp. F5/99]
 gi|261744786|gb|EEY32712.1| threonyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|264660935|gb|EEZ31196.1| threonyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
          Length = 658

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 152/445 (34%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 233 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLRIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 411 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 457

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 458 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 508

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 509 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 562

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 563 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 620

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 621 NMRRLGSRDQESMTLDEAIARLCEE 645


>gi|72162507|ref|YP_290164.1| threonyl-tRNA synthetase [Thermobifida fusca YX]
 gi|123747139|sp|Q47N28|SYT_THEFY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71916239|gb|AAZ56141.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Thermobifida
           fusca YX]
          Length = 659

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 70/447 (15%), Positives = 134/447 (29%), Gaps = 37/447 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      +L L +    +   G+  + P G      +    R     
Sbjct: 247 KSYLTMLEEAAKRDHRKLGVELDLFS-FPDELGSGLAVFHPKGGVVRKVMEEYSRRRHEE 305

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   ++ P +  A L+  SG   +Y   M                +  +   I+RS  +
Sbjct: 306 AGYQFVNTPHISKAGLFETSGHLPNYADAMFPPIQFEGADYYLKAMNCPMHNLIYRSRGR 365

Query: 124 SYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R+R F   DA+ +    +      +++    L
Sbjct: 366 SYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTKEQMPDEL-DRLLTFVL 424

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    GL    +   +         E                   +             
Sbjct: 425 DLLRDYGLSDFYLELSTRDDSPKFIGE---------------PQEWEEATEILRQAAQKQ 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y       + +  D++    ++S   ++                  +
Sbjct: 470 NLELVMDAGGAAYYGPKI---SVQAKDAIGRTWQMSTIQVDFQQP--------KRFELEY 518

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + ADG       +     G++    AV+   + G    W   V    I +          
Sbjct: 519 QAADGSRQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAPVQVVGIPIA------SEH 572

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E +  RL + G  V  D   +++  +   A     P  ++ G   VS   V  ++R
Sbjct: 573 VPYLEDVARRLREHGVRVEVDASDDRMQKKIRNAQKQKIPFMLLAGDNDVSKGAVSFRYR 632

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPV 448
                  + +++ I          R V
Sbjct: 633 DGSQNNGVPIDKAIEEILTVIRERRQV 659


>gi|308068985|ref|YP_003870590.1| Prolyl-tRNA synthetase class II (Proline--tRNA ligase class II)
           [Paenibacillus polymyxa E681]
 gi|305858264|gb|ADM70052.1| Prolyl-tRNA synthetase class II (Proline--tRNA ligase class II)
           [Paenibacillus polymyxa E681]
          Length = 579

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 126/276 (45%), Positives = 173/276 (62%), Gaps = 8/276 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  L  L+E P +AE+ SH+LMLR G I Q + G+Y+++PLG++ L  V  I+R+E
Sbjct: 1   MRQSQLLLTTLREAPAEAEVISHQLMLRGGFIRQLAAGMYTYMPLGRRVLRKVEQIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ  +LW ESGRYD YG E++RL DR+D+    GPTHEEV+T + R+
Sbjct: 61  MDRAGAGELLMPVLQPTELWQESGRYDVYGPELMRLQDRHDREFALGPTHEEVITSLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP T YQIQ KFRDE RPRFG++RSREFLMKDAYSFD   EG  H+Y  MF +
Sbjct: 121 EVNSYRKLPVTLYQIQTKFRDERRPRFGLLRSREFLMKDAYSFDAHWEGLDHTYWTMFRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL-SHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y RIF R GL    + A++G IGG+  +HEF+ LAD GE  +       ++    E    
Sbjct: 181 YHRIFTRCGLYFRAVEADAGAIGGEGETHEFMALADIGEDTIVACTCC-EYAANLEKAVA 239

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                +        AP +  ++  +   FD++   K
Sbjct: 240 RSTGKIE------IAPVSDENEHVSHPSFDTVKMEK 269



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/186 (35%), Positives = 106/186 (56%), Gaps = 4/186 (2%)

Query: 259 TSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            +D+ N    D  P   E +     GIE+GH+F  GTKYS  + ATF  A G +  + MG
Sbjct: 394 VADLRNVIEGDRCPQCNEGELKLHGGIEIGHVFKLGTKYSEKLGATFLDAFGTEQAMIMG 453

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+++A++E +HD  G+IWP ++APF++ +I I   D++     EK+Y +L   
Sbjct: 454 CYGIGVSRILSAIVEQNHDQNGMIWPYALAPFQVHIIPISVKDRLQMQIAEKLYNQLQDR 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G +F  +DL+G P++++VG K     KVE+  R +  +E + +E++ 
Sbjct: 514 GVEVLLDDREERPGVKFKDSDLVGIPVRIVVG-KDAEHGKVELVERKSCNKETIHIEDIE 572

Query: 436 NYASHR 441
                 
Sbjct: 573 RRILEL 578


>gi|120612314|ref|YP_971992.1| prolyl-tRNA synthetase [Acidovorax citrulli AAC00-1]
 gi|152074741|sp|A1TTD0|SYP_ACIAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120590778|gb|ABM34218.1| prolyl-tRNA synthetase [Acidovorax citrulli AAC00-1]
          Length = 581

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 116/237 (48%), Positives = 157/237 (66%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFVSTLKEAPADAEVVSHKLMTRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+ W E+GR+D  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVEVTMPVVQPAEYWQETGRFDKMGPELLRIRDRHGRDFVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD     +K SY  M  +
Sbjct: 121 ELRSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQAAAKASYQVMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE  +       D+    E  
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYCPQ-SDYAANMEKA 236



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 108/189 (57%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ K      RGIEVGH+FY GTKYS  M+ATF G DGK  + +MG
Sbjct: 392 VVADLRNVVAGDPSPDGKGTLAIERGIEVGHVFYLGTKYSRAMNATFLGEDGKPAFFEMG 451

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
            YGIG  R+ AA IE +HD +GIIWPD++APF + +  I        R A EK++A L  
Sbjct: 452 CYGIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVVCPIGMDRSDEVRAAAEKLHADLLT 511

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD GE+ G+ FA  +L+G P +V++  + + + +VE +HR       ++  ++
Sbjct: 512 AGVDVILDDRGERPGAMFADWELIGVPHRVVLSDRGLKEGQVEYQHRRDAAATKVASADI 571

Query: 435 INYASHRFS 443
             +   R  
Sbjct: 572 FAFIKDRIK 580


>gi|160914239|ref|ZP_02076460.1| hypothetical protein EUBDOL_00249 [Eubacterium dolichum DSM 3991]
 gi|158433866|gb|EDP12155.1| hypothetical protein EUBDOL_00249 [Eubacterium dolichum DSM 3991]
          Length = 610

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 139/436 (31%), Gaps = 39/436 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD +    +L +   M+ +++ G+  +LP G    + +     EE  +     +  P
Sbjct: 211 AKKRDHKKLGRELGIF--MMSEYAPGMPFFLPNGMILRNILENFWYEEHTKEHYQFIKTP 268

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + S +LW  SG +D+Y + M      +D+     P +       +++ + SY++ P   
Sbjct: 269 IMMSKELWETSGHWDNYKENMYISM-VDDREFAIKPMNCPGALLAYKAGLHSYKDFPLRM 327

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            ++    R E      G+ R R F   DA+ F    +        +     RI+  LGL 
Sbjct: 328 GELGQVHRHEASGALNGLFRVRTFTQDDAHIFMRPDQIESE-VMSLISFIDRIYASLGLS 386

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  + P                E +        +    +             +   
Sbjct: 387 YRI-ELSTRP----------------EEKYIGDLAIWEASEAALAAACKHAGKDYKVNPG 429

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD-H 310
             A Y    D H   + DSL    +     +++                T+  +DG    
Sbjct: 430 DGAFYGPKLDFH---IKDSLGREWQCGTIQLDMNLP--------ERFDLTYVESDGSKAR 478

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +     G++     ++     G    W          ++ +  H +      EK+  
Sbjct: 479 PVMLHRVIFGSIERFIGILIEHFAGHFPTWLA-----PQQIMVVPVHYEKHLSYAEKVNE 533

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L + G     D   E++G +   A L   P Q+++G     +  V I+         + 
Sbjct: 534 MLVQNGFRSKLDARNEKLGYRIREAQLAKIPYQIVLGDGEEENGTVTIRRAQGKDSTTLP 593

Query: 431 LEEVINYASHRFSNNR 446
           L+  I          R
Sbjct: 594 LDAFIAMLKEEVEEKR 609


>gi|218710332|ref|YP_002417953.1| prolyl-tRNA synthetase [Vibrio splendidus LGP32]
 gi|254782926|sp|B7VIT2|SYP_VIBSL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218323351|emb|CAV19528.1| prolyl-tRNA synthetase [Vibrio splendidus LGP32]
          Length = 571

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 118/277 (42%), Positives = 166/277 (59%), Gaps = 5/277 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVEILMPVVQPFELWEETGRSEKMGPELLRFTDRHSRPFVLSPTAEEVVTSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EISSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN---- 236
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +       D+    E     
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAF-SSESDYAANIEKAEAL 239

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
              +++ +    +E    P A T     E+   ++ +
Sbjct: 240 APTEEVAAPTQEMELVDTPNAKTIAELVEQHGLAIEK 276



 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/190 (35%), Positives = 109/190 (57%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A   D+ N    D     +      RGIEVGHIF  G  YS  M+    G DGK   ++M
Sbjct: 382 AQVEDLRNVVEGDLSPCGQGTIQLKRGIEVGHIFQLGNTYSKAMNCNVLGPDGKSVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVA+ IE +HD  GI WPD++APF+++++ +     +  ++A EK+YA L+
Sbjct: 442 GCYGIGVSRVVASAIEQNHDKFGITWPDALAPFQVAIVPMNMHKSERVKEAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G +V +DD  E+ G  F   +L+G P  +++G + + +   E K+R TG +E ++++ 
Sbjct: 502 AMGIEVLFDDRKERPGVMFKDIELVGIPHTIVIGDRSMDEGNFEYKNRRTGDKEAIAMDT 561

Query: 434 VINYASHRFS 443
           VI +   + +
Sbjct: 562 VIEHLKAQLA 571


>gi|306843943|ref|ZP_07476538.1| threonyl-tRNA synthetase [Brucella sp. BO1]
 gi|306275698|gb|EFM57422.1| threonyl-tRNA synthetase [Brucella sp. BO1]
          Length = 658

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 153/445 (34%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 233 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 291 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 351 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLRIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 411 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 457

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 458 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 508

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 509 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 562

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L  VG  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 563 --SDADEYAKEAAAKLKAVGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 620

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 621 NMRRLGSRDQESMTLDEAIARLCEE 645


>gi|330823518|ref|YP_004386821.1| Prolyl-tRNA synthetase [Alicycliphilus denitrificans K601]
 gi|329308890|gb|AEB83305.1| Prolyl-tRNA synthetase [Alicycliphilus denitrificans K601]
          Length = 581

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 160/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM+R G+I +   GIYS++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMMRAGLIKKLGAGIYSYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E ++P +Q A+LW E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVECTMPVVQPAELWQETGRFEKMGPELLRIQDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD    G+K SY  M  +
Sbjct: 121 ELRSYKQLPRNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQAGAKASYQAMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL+   + A+SG IGGDLS EF V+A TGE  +       D+    E  
Sbjct: 181 YRRIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC-PASDYAANMEKA 236



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/189 (40%), Positives = 109/189 (57%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A +D+ N    D  P+ K V    RGIEVGH+FY  TKYS  M+ATF G DGK  + +MG
Sbjct: 392 AVADLRNVVAGDPSPDGKGVLAIERGIEVGHVFYLSTKYSKAMNATFLGEDGKPAFFEMG 451

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
            YGIG  R+ AA IE +HD +GIIWPD++APF + +  I     +  R   EK++  L  
Sbjct: 452 CYGIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVICPIGMDRSEEVRAVAEKLHGELLA 511

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD GE+ G+ FA  +L+G P ++ +G K + + +VE  HR       + + E+
Sbjct: 512 SGIDVILDDRGERPGAMFADWELIGVPHRITIGDKGLKEGQVEYLHRRDAGATKVGVAEI 571

Query: 435 INYASHRFS 443
           + +   R +
Sbjct: 572 LAHVKERVA 580


>gi|319761647|ref|YP_004125584.1| prolyl-tRNA synthetase [Alicycliphilus denitrificans BC]
 gi|317116208|gb|ADU98696.1| prolyl-tRNA synthetase [Alicycliphilus denitrificans BC]
          Length = 581

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 118/237 (49%), Positives = 160/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM+R G+I +   GIYS++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMMRAGLIKKLGAGIYSYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E ++P +Q A+LW E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVECTMPVVQPAELWQETGRFEKMGPELLRIQDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD    G+K SY  M  +
Sbjct: 121 ELRSYKQLPRNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQAGAKASYQAMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL+   + A+SG IGGDLS EF V+A TGE  +       D+    E  
Sbjct: 181 YRRIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC-PASDYAANMEKA 236



 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 77/189 (40%), Positives = 110/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A +D+ N    D  P+ K V    RGIEVGH+FY GTKYS  M+ATF G DGK  + +MG
Sbjct: 392 AVADLRNVVAGDPSPDGKGVLAIERGIEVGHVFYLGTKYSKAMNATFLGEDGKPAFFEMG 451

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
            YGIG  R+ AA IE +HD +GIIWPD++APF + +  I     +  R   EK++  L  
Sbjct: 452 CYGIGITRLPAAAIEQNHDERGIIWPDAIAPFTVVICPIGMDRSEEVRAVAEKLHGELLA 511

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD GE+ G+ FA  +L+G P ++ +G K + + +VE  HR       + + E+
Sbjct: 512 SGIDVILDDRGERPGAMFADWELIGVPHRITIGDKGLKEGQVEYLHRRDAGATKVGVAEI 571

Query: 435 INYASHRFS 443
           + +   R +
Sbjct: 572 LAHVKERVA 580


>gi|237742688|ref|ZP_04573169.1| prolyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|229430336|gb|EEO40548.1| prolyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
          Length = 567

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 120/251 (47%), Positives = 164/251 (65%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S    ++    E    +
Sbjct: 181 YSRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD-GSEYAANIEKAVSE 239

Query: 241 DIISLNSIVEQ 251
            I      +++
Sbjct: 240 LINPPKEELKE 250



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/186 (39%), Positives = 103/186 (55%), Gaps = 2/186 (1%)

Query: 259 TSDVHNEKLFDSLP-ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +D+   K+ ++     K  SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG Y
Sbjct: 381 VADIRTAKVGENCIIGGKLHSARGIECGQIFKLGDKYSKVMNATYLDENGKTQYMLMGCY 440

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R +AA IE ++D  GIIWP S+AP+ + +I     ++V     EKIY  L +   
Sbjct: 441 GIGVTRTMAAAIEQNNDENGIIWPVSIAPYTVDVIPANIKNEVQVSLAEKIYNELEEEKI 500

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD  E+ G +F  ADL+GFP +++VG +   +  VE+K R TG   ++S  EVI  
Sbjct: 501 DAMLDDRDEKPGFKFKDADLIGFPFKIVVGKR-ADEGIVELKIRRTGETLEISQNEVIAK 559

Query: 438 ASHRFS 443
                 
Sbjct: 560 IKELMK 565


>gi|162289255|ref|YP_522539.2| prolyl-tRNA synthetase [Rhodoferax ferrireducens T118]
 gi|114152240|sp|Q21YZ5|SYP_RHOFD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 580

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 120/237 (50%), Positives = 156/237 (65%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R GMI +   GIYS +P+G + +  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMTRAGMIKKLGAGIYSLMPMGLRVVRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR++S G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELVMPVVQPAELWQETGRFESNGPELLRIKDRHGRDFVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD     +K SY  M  +
Sbjct: 121 EIKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQASAKASYQVMAAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE  +       D+    E  
Sbjct: 181 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC-PGSDYAANMEKA 236



 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 73/190 (38%), Positives = 109/190 (57%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+ N    D+ P+ + V    RGIE+GH+FY GTKYS  M+ATF   +GK  +++M
Sbjct: 390 ALVADLRNVVAGDASPDGQGVLAIERGIEIGHVFYLGTKYSQAMNATFLDVNGKPQFMEM 449

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLS 373
           G YGIG  R+ AA IE +HD +GIIWPD++APF + L  I        + A +K+YA L 
Sbjct: 450 GCYGIGITRLPAAAIEQNHDERGIIWPDALAPFTVVLCPISPERFPDVKAASDKLYAELL 509

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G DV  DD GE+ G+ FA  +L+G P +V +G + +   +VE +HR       + +  
Sbjct: 510 AAGVDVILDDRGERPGAMFADWELIGVPHRVTIGDRGLKAGEVEYQHRRDSAATTVGVTA 569

Query: 434 VINYASHRFS 443
           + +    +  
Sbjct: 570 IFSLLQAKLK 579


>gi|89344805|gb|ABD69008.1| prolyl-tRNA synthetase [Rhodoferax ferrireducens T118]
          Length = 600

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 120/237 (50%), Positives = 156/237 (65%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R GMI +   GIYS +P+G + +  V  I+REE
Sbjct: 21  MKASQFFISTLKEAPADAEVVSHKLMTRAGMIKKLGAGIYSLMPMGLRVVRKVEQIVREE 80

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR++S G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 81  MNRAGAVELVMPVVQPAELWQETGRFESNGPELLRIKDRHGRDFVVQPTSEEVVTDIARQ 140

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD     +K SY  M  +
Sbjct: 141 EIKSYKQLPKNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDQASAKASYQVMAAA 200

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL    + A+SG IGGDLS EF V+A TGE  +       D+    E  
Sbjct: 201 YRRIFDRFGLTYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC-PGSDYAANMEKA 256



 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 73/190 (38%), Positives = 109/190 (57%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+ N    D+ P+ + V    RGIE+GH+FY GTKYS  M+ATF   +GK  +++M
Sbjct: 410 ALVADLRNVVAGDASPDGQGVLAIERGIEIGHVFYLGTKYSQAMNATFLDVNGKPQFMEM 469

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLS 373
           G YGIG  R+ AA IE +HD +GIIWPD++APF + L  I        + A +K+YA L 
Sbjct: 470 GCYGIGITRLPAAAIEQNHDERGIIWPDALAPFTVVLCPISPERFPDVKAASDKLYAELL 529

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G DV  DD GE+ G+ FA  +L+G P +V +G + +   +VE +HR       + +  
Sbjct: 530 AAGVDVILDDRGERPGAMFADWELIGVPHRVTIGDRGLKAGEVEYQHRRDSAATTVGVTA 589

Query: 434 VINYASHRFS 443
           + +    +  
Sbjct: 590 IFSLLQAKLK 599


>gi|294784787|ref|ZP_06750075.1| proline--tRNA ligase [Fusobacterium sp. 3_1_27]
 gi|294486501|gb|EFG33863.1| proline--tRNA ligase [Fusobacterium sp. 3_1_27]
          Length = 567

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 120/251 (47%), Positives = 164/251 (65%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S    ++    E    +
Sbjct: 181 YSRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD-GSEYAANIEKAVSE 239

Query: 241 DIISLNSIVEQ 251
            I      +++
Sbjct: 240 LINPPKEELKE 250



 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/186 (38%), Positives = 102/186 (54%), Gaps = 2/186 (1%)

Query: 259 TSDVHNEKLFDSLP-ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +D+   K+ ++     K  SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG Y
Sbjct: 381 VADIRTAKVGENCIIGGKLHSARGIECGQIFKLGDKYSKVMNATYLDENGKTQYMLMGCY 440

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R +AA IE ++D  GIIWP S+AP+ + +I     ++V     EKIY  L +   
Sbjct: 441 GIGVTRTMAAAIEQNNDENGIIWPVSIAPYTVDVIPANIKNEVQVSLAEKIYNELEEEKI 500

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD  E+ G +F  ADL+GFP +++VG +   +  VE+K R TG   ++   E+I  
Sbjct: 501 DAMLDDRDEKPGFKFKDADLIGFPFKIVVGKR-ADEGIVELKIRRTGETLELPQNEIIAK 559

Query: 438 ASHRFS 443
                 
Sbjct: 560 IKELMK 565


>gi|238650420|ref|YP_002916272.1| threonyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
 gi|259516667|sp|C4K0X3|SYT_RICPU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238624518|gb|ACR47224.1| threonyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
          Length = 635

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 154/438 (35%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L      + ++G+  W   G    + +   IR++  + G
Sbjct: 231 YLLMLEEAEKRDHRKLGRELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG ++ +  +M    + +DK +   P +      IF+  IKSY
Sbjct: 289 YTEVKTPVLVDKSLWEASGHWEKFRDDMF-ALETDDKTLALKPMNCPCHVQIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    + +  + +        +
Sbjct: 348 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCAAEQITDETVSF-CKLLTEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S+E                   D    +     +    
Sbjct: 407 YKDFGFTDIKVKFSDRPEIRAGSNE-----------------VWDKAENALKEAVEQAGF 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             ++     A Y    +     L D++    +     ++    F    +    + A++  
Sbjct: 450 TYTLNPGEGAFYGPKLEF---VLTDAIGRQWQCGTLQMD----FVLPER----LDASYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           A G+      +    +G++     ++   + G+  +W           + I        D
Sbjct: 499 ASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW------LAPVQVAIATITSDLND 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G    ++   ++I  +         P+  ++G +   + +V I+   T
Sbjct: 553 YALEVQKALIDNGVRTDFNISPDKINYKIREFSNQKIPMIAVIGKQEQKNKQVAIRRLGT 612

Query: 424 GIREDMSLEEVINYASHR 441
             +E +S+E++I      
Sbjct: 613 TDQEVLSVEQLIAVVKEE 630


>gi|284031290|ref|YP_003381221.1| threonyl-tRNA synthetase [Kribbella flavida DSM 17836]
 gi|283810583|gb|ADB32422.1| threonyl-tRNA synthetase [Kribbella flavida DSM 17836]
          Length = 673

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 66/456 (14%), Positives = 141/456 (30%), Gaps = 47/456 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  + P G      +    R+     G
Sbjct: 252 YLTRLEEAAKRDHRKLGTELDLFS-FPDEIGSGLAVFHPKGGVLRKVMEDYSRQRHVEDG 310

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              +  P +  A L+  SG  D Y   M                 +  +     P +  +
Sbjct: 311 YEFVYTPHITKAHLFETSGHLDWYADGMYPPMHLDEERGPDGELRKQGQDYYLKPMNCPM 370

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF +  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +    
Sbjct: 371 HNLIFDARGRSYRELPLRLFEFGTVYRLEKSGVIHGMTRARGFTQDDAHIYCTREQMRDE 430

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    L +    GL    +   +                    +   S +      
Sbjct: 431 L-KNLLTFVLGLLADYGLDDFYLELST----------------KNPEKFVGSDEVWQEAT 473

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +                   A Y       + +  D++    ++S   ++    F    
Sbjct: 474 ETLREVAVSSGLELVPDPGGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FNLPE 526

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           ++ L  +A+      +   V +     G++    AV+    +    ++P  +AP ++  I
Sbjct: 527 RFELEYTAS---DGSRQRPVMIHRALFGSIERFVAVLT---EHYAGVFPPWLAPVQVIGI 580

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            I        D   ++ A+L   G  +  D   +++  +   A     P  +I G + ++
Sbjct: 581 PITDGH---VDYLYQVAAQLKAQGIRIEIDASDDRMQKKIRNAQKAKVPYMLIAGDEDMA 637

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
              V  ++R    +  + + + +            V
Sbjct: 638 AGSVSFRYRDGSQKNGIPIADAVAEIVESVQKRVQV 673


>gi|99081562|ref|YP_613716.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ruegeria sp.
           TM1040]
 gi|123077585|sp|Q1GFW2|SYT_SILST RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|99037842|gb|ABF64454.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ruegeria sp.
           TM1040]
          Length = 648

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 148/444 (33%), Gaps = 45/444 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W P G +    +   +R  Q+R
Sbjct: 234 KAHLTMLEEAAKRDHRKLGREMNLF--HMQEEAPGQVFWHPNGWRIYTTLQDYMRRMQDR 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-----GPTHEEVMTDIF 118
            G +E++ P +    LW +SG +D Y + M  +    D A         P +      +F
Sbjct: 292 DGYVEVNTPQVVDRKLWEKSGHWDKYQENMFIVEVDEDHAREKAVNALKPMNCPCHVQVF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D + F    + +  +  K 
Sbjct: 352 NQGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDGHIFCTEDQITSET-AKF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                +++  LG  +  ++  + P     S E                   D    +   
Sbjct: 411 IAFLSKVYADLGFDNWTIKLSTRPEQRIGSDE-----------------TWDNMEQALGD 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+E   A Y    +     L D++  N +     ++              
Sbjct: 454 ACKAAGYDYEILEGEGAFYGPKLEF---TLTDAIGRNWQCGTLQVDANLP--------ER 502

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A+F G DG  H    +    +G+      ++   H GK   W         S+     
Sbjct: 503 LEASFIGQDGSKHRPVMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIT---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++   L   G     D   E+I  +     +   P+ + VG + V +  V
Sbjct: 559 --SEADDYVNEVVETLRAAGVRAEADTRNEKINYKVREHSVGKVPVILAVGHREVEERTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYASH 440
            ++       +  SL  V    + 
Sbjct: 617 SVRRLGEKQTKVESLTNVTEELAK 640


>gi|242033449|ref|XP_002464119.1| hypothetical protein SORBIDRAFT_01g012680 [Sorghum bicolor]
 gi|241917973|gb|EER91117.1| hypothetical protein SORBIDRAFT_01g012680 [Sorghum bicolor]
          Length = 739

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 75/446 (16%), Positives = 152/446 (34%), Gaps = 38/446 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R ++Y   + +   RD  I      L     H+ S G   +LP G +  + +   +R++ 
Sbjct: 331 RLTEYKHFLEEAKKRDHRILGKAQELF--FFHELSPGSCFFLPHGARIYNKLMDFMRQQY 388

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + +  LW  SG   +Y + M  + +   +     P +      +F + 
Sbjct: 389 RARGYQEVLSPNMYNMQLWETSGHAANYKENMF-VFEIEKQEFGLKPMNCPGHCLMFANR 447

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP       +  R+EL     G+ R R F   DA+ F    +        +   
Sbjct: 448 VRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDE-VKAVLDF 506

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G K   +   + P       E                   +          +
Sbjct: 507 INYVYEIFGFKY-ELELSTRPEKYLGEIE-----------------TWNKAEQQLTEALN 548

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +      I E   A Y    D+    +FD+L    + +   ++    F    ++ L  SA
Sbjct: 549 EFGKPWKINEGDGAFYGPKIDIG---VFDALKRKFQCATLQLD----FQLPIRFKLAYSA 601

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                   +  V +    +G++  + A++   ++GK  +W             + +    
Sbjct: 602 E--DEAKIERPVMIHRAILGSVERMFAILLEHYNGKWPLW------LSPRQAIVCSVSSG 653

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +++ A L + G     D     I  +   A L  F   ++VG++      + ++ 
Sbjct: 654 SVEYAKQVLATLHEAGFHADIDASDRTIQKKVREAQLAQFNYILVVGAQEAETGNICVRV 713

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R       MS++  +       +  R
Sbjct: 714 RDNADLATMSVDGFVTRLKEEIAAFR 739


>gi|157828174|ref|YP_001494416.1| threonyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|166225494|sp|A8GR83|SYT_RICRS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157800655|gb|ABV75908.1| threonyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 635

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 154/438 (35%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L      + ++G+  W   G    + +   IR++  + G
Sbjct: 231 YLLMLEEAEKRDHRKLGRELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG ++ +  +M    + +DK +   P +      IF+  IKSY
Sbjct: 289 YTEVKTPVLVDKSLWEASGHWEKFRDDMF-ALETDDKTLALKPMNCPCHVQIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    + +  + +        +
Sbjct: 348 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCAAEQITDETVSF-CKLLTEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S+E                   D    +     +    
Sbjct: 407 YKDFGFTDIKVKFSDRPEIRAGSNE-----------------VWDKAENALKEAVEQAGF 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             ++     A Y    +     L D++    +     ++    F    +    + A++  
Sbjct: 450 TYTLNPGEGAFYGPKLEF---VLTDAIGRQWQCGTLQMD----FVLPER----LDASYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           A G+      +    +G++     ++   + G+  +W           + I        D
Sbjct: 499 ASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW------LAPVQVAIATITSDLND 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G    ++   ++I  +         P+  ++G +   + +V I+   T
Sbjct: 553 YALEVQKALIDNGVRTDFNISPDKINYKIREFSNQKIPMIAVIGKQEQENKQVAIRRLGT 612

Query: 424 GIREDMSLEEVINYASHR 441
             +E +S+E++I      
Sbjct: 613 TDQEVLSVEQLIAVVKEE 630


>gi|262276504|ref|ZP_06054313.1| prolyl-tRNA synthetase [Grimontia hollisae CIP 101886]
 gi|262220312|gb|EEY71628.1| prolyl-tRNA synthetase [Grimontia hollisae CIP 101886]
          Length = 571

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 125/290 (43%), Positives = 168/290 (57%), Gaps = 20/290 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLQKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  INNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR+REF M DAYSFDL  EG + SY  M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDEVRPRFGVMRAREFSMMDAYSFDLDKEGLQKSYEAMHTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y   F R+GL   P+ A++G IGG  SHEF VLA++GE  +       D+    E     
Sbjct: 181 YCAAFDRMGLDYRPVLADTGAIGGSASHEFHVLANSGE-DIIAFSSESDYAANIEMAEAV 239

Query: 236 --------------NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                           D  D  ++  +VEQ+  P   T      K  D++
Sbjct: 240 APAGERAAPTQEMTLVDTPDAKTIAQLVEQFGLPIEKTVKTLFVKASDAV 289



 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I           +D+ N    D  P  K      RGIEVGHIF  GT YS  M
Sbjct: 366 DDKHYFGINWGRDVELGDVADIRNVVEGDPSPCGKGTIQLKRGIEVGHIFQLGTNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
                GADGK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF ++++ +    
Sbjct: 426 GCGVLGADGKNVILEMGCYGIGVSRVVAAAIEQNHDENGIIWPDAIAPFTVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  +DA EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 486 SERVKDAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGIPHTIIIGERSMDNGVFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            KHR  G +  + +E ++ +   + +
Sbjct: 546 YKHRRNGEKVPVDMENMVEFLKAKLA 571


>gi|147669325|ref|YP_001214143.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Dehalococcoides
           sp. BAV1]
 gi|189083604|sp|A5FRB3|SYT_DEHSB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146270273|gb|ABQ17265.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Dehalococcoides
           sp. BAV1]
          Length = 582

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 153/442 (34%), Gaps = 40/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +    +   G+ +WLP G      +    ++E  + G
Sbjct: 174 YLNMLEEAAKRDHRKLGKELELFSLH-QEIGGGLVNWLPNGAIVRHLIEEFWKKEHLKRG 232

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DLW  SG +  Y + M    D + +  +  P +      +F++  +SY
Sbjct: 233 YDLVYTPHIAKVDLWKTSGHWGFYRENMYSPMDIDGEEYVLKPMNCVYHILMFKNRTRSY 292

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP    ++   +R E      G+ R R F   DA+ F L  +  K     +      +
Sbjct: 293 KELPIRMAELGTVYRYERSGVLHGLSRVRGFTQDDAHIFCLYDQLEKEVVK-VLDLAKFM 351

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     +   + P                  +     D  ++         +    
Sbjct: 352 IDTFGFTKYKVMLSTRP-----------------EKYVGELDKWEYATDILAKALEANQI 394

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +       Y    D+  E   D+L    +     ++    F    ++      +  G
Sbjct: 395 PYQVDPGEGVFYGPKIDIKFE---DALGRAWQGPTIQVD----FQLPERFD----VSVVG 443

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGKD  V  +    +G+M    + +    +  G  +P  ++P +  +I I        +
Sbjct: 444 EDGKDQPVAMVHRTVLGSMERFMSCLT---EQYGGAFPAWLSPKQAMVIPIADRH---TE 497

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+   L +    V  D   E +  +   A L   P  ++VG K +    V ++ R T
Sbjct: 498 FAEKLACELREEEVRVEVDSRSETMNQKIRQAQLAKIPYMLVVGDKEIETQSVAVRTR-T 556

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G ++ M   E  +    +    
Sbjct: 557 GSQQVMPFAEFKSMLLAKIKTK 578


>gi|222086050|ref|YP_002544582.1| threonyl-tRNA synthetase [Agrobacterium radiobacter K84]
 gi|254783503|sp|B9JFG4|SYT_AGRRK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221723498|gb|ACM26654.1| threonyl-tRNA synthetase [Agrobacterium radiobacter K84]
          Length = 662

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 143/441 (32%), Gaps = 40/441 (9%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L IL +   RD      ++ L      +   G+  W   G +    + + +R       
Sbjct: 234 YLHILAEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHGKGWRIFQTLVSYMRRRLE-GD 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG +  Y   M ++        +D+     P +      IF+ 
Sbjct: 291 YQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIFKH 350

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR LP    +     R E      G+MR R F   DA+ F    + +         
Sbjct: 351 GLKSYRELPIRLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKIN-D 409

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L ++   G + + ++  + P            A++   +V          I +++   
Sbjct: 410 LILSVYEDFGFEEVVVKLSTRPEKRVGDDALWDRAESVMMEVL-------KTIEAQSGGR 462

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                L        A Y    +     L D++    +     ++      FG        
Sbjct: 463 IKTGIL----PGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG-------- 507

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +     +      +     G+M     ++  +  G   +W   +     ++       
Sbjct: 508 AFYIDQHSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLWVSPLQVVVATIT------ 561

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  E++   L   G  V  D   E+I  +     +   P+ ++ G K   +  V I
Sbjct: 562 SEADGYGEEVAEALRDAGLTVETDFRNEKINYKIREHSVTKVPVIIVCGKKEAEERSVNI 621

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           +   +  +  MSL+E I   S
Sbjct: 622 RRLGSQAQTAMSLDEAIASLS 642


>gi|319653813|ref|ZP_08007907.1| threonyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317394349|gb|EFV75093.1| threonyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 399

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 156/437 (35%), Gaps = 39/437 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++    +      +L L T M  + + G+  +LP G    + + +  R +  R G  E+ 
Sbjct: 1   MEAEKINHRKLGQELELFTSM--EEAPGMPFFLPNGMVMRNELESYWRRKHQRAGYQEIK 58

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +   +LW +SG ++ Y + M   ++ +++     P +      +F S  +SYR LP 
Sbjct: 59  TPIMMKQELWEQSGHWNHYHENM-YFSNVDEQNYAIKPMNCPGAILVFNSKRRSYRELPL 117

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + ++ L  R EL     G++R R F   DA+ F                  L +     
Sbjct: 118 RYAELGLVHRHELSGSLNGLLRVRSFTQDDAHLFV-----MADQIEAEIDKILVLIDEFY 172

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                              ++ V   T   +   S++  +    +  +   +      I 
Sbjct: 173 SHFG--------------FDYKVELSTRPEEYMGSQEMWERAEGALESVLKNKGVNYQIN 218

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D H   + DSL  + +     ++    F           A     +   
Sbjct: 219 PGDGAFYGPKIDFH---ILDSLGRSWQCGTIQLD----FQMPQ---KFNCAYVGEDNKLH 268

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             + +     G++    A++    +     +P  ++P +  +I I        +  + + 
Sbjct: 269 LPIMIHRAIFGSVERFMAILI---EHFAGDFPLWLSPVQAKIIPISDSHA---EYADYVK 322

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           ++L + G     D   E++G +   A     P  +++G K +    + ++ R  G    M
Sbjct: 323 SQLEEAGIRAEADFRTEKMGLKIREAAKQKVPYMLVIGDKEMEQQSLSLRKRKEGNIGVM 382

Query: 430 SLEEVINYASHRFSNNR 446
           S+++VI    +  +  R
Sbjct: 383 SIKDVIERFINETNGGR 399


>gi|254303428|ref|ZP_04970786.1| proline--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148323620|gb|EDK88870.1| proline--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 567

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 120/251 (47%), Positives = 164/251 (65%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGAEMLRLKDRHERDFVLSPTQEEMITAIIRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S    ++    E    +
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD-GSEYAANIEKAVSE 239

Query: 241 DIISLNSIVEQ 251
            I      +++
Sbjct: 240 LINPPKEELKE 250



 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 74/184 (40%), Positives = 103/184 (55%), Gaps = 2/184 (1%)

Query: 261 DVHNEKLFDSLP-ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           D+   K+ ++     K  SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG YGI
Sbjct: 383 DIRTAKVGENCITGGKLHSARGIECGQIFKLGDKYSKAMNATYLDENGKTQYMLMGCYGI 442

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R +AA IE ++D  GIIWP S+AP+ + +I     ++V  +  EKIY  L +   D 
Sbjct: 443 GVTRTMAAAIEQNNDENGIIWPVSIAPYIVDVIPANIKNEVQVNLAEKIYNELEEEKIDS 502

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E+ G +F  ADL+GFP +V+VG +   +  VE+K R TG   ++S  EVI    
Sbjct: 503 MLDDRDEKPGFKFKDADLIGFPFKVVVGKR-ADEGIVELKIRRTGETLEVSENEVIAKIK 561

Query: 440 HRFS 443
               
Sbjct: 562 ELMK 565


>gi|320451414|ref|YP_004203510.1| threonyl-tRNA synthetase [Thermus scotoductus SA-01]
 gi|320151583|gb|ADW22961.1| threonyl-tRNA synthetase [Thermus scotoductus SA-01]
          Length = 659

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 157/450 (34%), Gaps = 41/450 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
             +Y   + +   RD      +L L   +I     KG+  WLP G    + + A +REEQ
Sbjct: 238 LKEYLWQLEEAKKRDHRRLGRELELF--LIDPMVGKGLVLWLPKGNVIREELMAFMREEQ 295

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDI 117
            R G   ++ P + S +L+  SG Y  Y +         ++      +  P +      I
Sbjct: 296 IRRGYQLVTTPHIGSLELYRTSGHYPYYAESQFPPISFKERGEEEEYLLKPMNCPHHIRI 355

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +    +SYR LP    +    +R E      G+ R R F   DA+ F  TPE  K  +  
Sbjct: 356 YAFKKRSYRELPLRLAEFGTVYRYEKAGELLGLTRVRGFTQDDAHLFC-TPEQVKEEFLG 414

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L++   LGLK    R  +               D    +    +           
Sbjct: 415 VLDLVLKVLSTLGLKDYRARIGTR--------------DPKSDKYVGDEAKWSLAERQIE 460

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               +     ++ E   A Y    D     + D+L    ++    ++      FG     
Sbjct: 461 EAALEAGLHYTVEEGDAAFYGPKLDF---VVKDALGREWQLGTIQVDYNLPERFG----- 512

Query: 297 PMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+ G DG +H    +     G++     ++     G   +W   V    + +    
Sbjct: 513 ---LTYVGPDGAEHRPVMIHRAPFGSLERFIGILIEHFAGDFPLWLAPVQVVVVPV---- 565

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   D  +++  +L + G     D   E++ ++   A++   P  ++VG +  ++  
Sbjct: 566 --SEKQEDYAKEVVFKLKEAGLRAEADLRPERMQARIRDAEVQKVPYVLVVGDREKAEGT 623

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V ++ R  G    M L   +  A   +   
Sbjct: 624 VSVRRRHRGNLGSMPLAAFLEAALKEYKER 653


>gi|260103159|ref|ZP_05753396.1| threonine-tRNA ligase [Lactobacillus helveticus DSM 20075]
 gi|260083018|gb|EEW67138.1| threonine-tRNA ligase [Lactobacillus helveticus DSM 20075]
          Length = 644

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 156/441 (35%), Gaps = 36/441 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD       L L    +  +   G+  W+P G      V   I + +   G  
Sbjct: 232 RRQEIKERDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYQ 289

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + D +  SG +  Y  +M    D  D  M    P +      IF+ HI+SYR
Sbjct: 290 HVYTPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIFKHHIRSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ +  R E      G+ R RE  + D ++F +  +     + K+    + ++
Sbjct: 350 DLPLRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVVLDQVQTE-FAKILKLIMEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +     R                       + F + +  +          DD+   
Sbjct: 409 KDFDITDYYFRLS-------------YRDPKNTDKYFANDEMWEKSQKMLKGAMDDLGLD 455

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G 
Sbjct: 456 YVEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPDRF----GLTYVGK 504

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG++H    +    +G M    A +   + G    W        +    I  +++   + 
Sbjct: 505 DGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PVQAEIIPVNNEAHGEY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            EK+ A L+K G  V  DD  E++G +   +     P  +++G + +   KV ++   T 
Sbjct: 560 AEKVRAELAKRGFRVEVDDRNEKMGYKIRESQTQKVPYTLVLGDEEMKSGKVNLRRYGTD 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
                SL++ IN       + 
Sbjct: 620 EEISKSLDDFINEIDADVKSY 640


>gi|166365900|ref|YP_001658173.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|166088273|dbj|BAG02981.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
          Length = 618

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 151/443 (34%), Gaps = 38/443 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            Y     +   RD      +L L +  I +    G+  W P G      +    R+    
Sbjct: 209 NYLQQKEEAQRRDHRKLGQQLKLFS--IQEDAGGGLVFWHPRGATMRYLIEDYWRQAHLE 266

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P L + DLW  SG +D Y   M    +   ++    P +       +++ + 
Sbjct: 267 AGYQFLYTPHLANLDLWKTSGHWDFYRDNMFEAIELEQQSYQIKPMNCPFHVLTYQNDLH 326

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR  P  + ++   +R E      G+MR R F   DA+ F L  + +      +     
Sbjct: 327 SYREFPLRWAELGTVYRYERSGVLHGLMRVRGFTQDDAHIFCLPEQIAAE-ILGVLNLTE 385

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +I    G  +  +   + P                      S    +    +     +  
Sbjct: 386 KILSDFGFTNYQINLSTRPSKS-----------------VGSDSVWELATAALIEALNAK 428

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  +   A Y    D+   K+ D++    + S   ++    F    ++ +   A  
Sbjct: 429 KWDYIEDQGGGAFYGPKIDI---KIQDAIGRMWQCSTIQVD----FNLPERFDMQYVAR- 480

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                ++  + +     G++     ++    +     +P  +AP ++ L+ +       +
Sbjct: 481 --DGTRERPIMIHRAIFGSLERFFGILI---ENYAGDFPLWLAPIQVRLLPV---SDEQQ 532

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                +  +L + G  V  D  GE++G Q    +L   P+  ++G + VS   + ++ R 
Sbjct: 533 HYALGVAMQLKQAGYRVEIDKTGERLGKQIRTGELEKIPVLAVIGKREVSSKTLSVRTRQ 592

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G    M+L +++        + 
Sbjct: 593 GGDLGSMTLVDLLGKMQTAILSK 615


>gi|332978157|gb|EGK14892.1| proline--tRNA ligase [Psychrobacter sp. 1501(2011)]
          Length = 576

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 126/306 (41%), Positives = 181/306 (59%), Gaps = 6/306 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DA+I S +LM+R G+I + + G+Y WLP+G K L  V  I+REE
Sbjct: 1   MRASQFLFATLKETPSDADIVSSQLMVRAGLIRKLASGLYVWLPMGLKVLQKVEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P  Q A+LW ESGR++ YG E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MQNIGAQEVLMPMTQPAELWQESGRFEDYGPELLRFTDRHNRDFVLGPTHEEVITDLARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP TF+QIQ KFRDE+RPRFG+MR+REF MKDAYSF +     + +Y +M+ +
Sbjct: 121 ELRSYKQLPVTFFQIQGKFRDEIRPRFGIMRAREFTMKDAYSFHVDQASLEITYQQMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP---SENT 237
           Y RIF RLGL    + A++G IGG  SHEF VLA +GE  +  S    D+      +E  
Sbjct: 181 YTRIFQRLGLTFRAVLADTGSIGGSASHEFHVLAGSGEDAIAFSD-GSDYAANVELAEAV 239

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D+  +     +    P   T++  +   F  +P    V    ++  HI   GT+    
Sbjct: 240 CNDERAAPTQDRQDVATPKIQTNE--DLAKFLDIPLETTVKTLIVKGHHINEDGTEGDEQ 297

Query: 298 MSATFK 303
           + A   
Sbjct: 298 LVALVV 303



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 69/198 (34%), Positives = 103/198 (52%), Gaps = 8/198 (4%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A      D+ N    D  P+ K      RGIEVGHIF  G KYS  ++ T  G DGK
Sbjct: 379 ERDATITEVVDIRNVVEGDPSPDGKGTLSIKRGIEVGHIFQLGDKYSKALNCTVMGEDGK 438

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA------PFKISLINIKAHDQVCR 362
              + MG YGIG  R++AA IE +HD  GIIW  +        PF I+++ +K+ ++   
Sbjct: 439 PVTLMMGCYGIGVSRIIAAAIEQNHDDNGIIWAKTPNVNDSIAPFDIAIVPMKSKEETVM 498

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E +Y  L   G +V  DD  E+ G +FA  +L+G P +++V  + +++ K E   R 
Sbjct: 499 QTAEALYQELKAKGLNVLLDDRNERPGVKFADLELIGIPHRIVVSDRNLAEEKYEYVDRR 558

Query: 423 TGIREDMSLEEVINYASH 440
            G ++ +S EEV+   S 
Sbjct: 559 DGEKQLLSREEVLAKVSQ 576


>gi|297617181|ref|YP_003702340.1| prolyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
 gi|297145018|gb|ADI01775.1| prolyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
          Length = 567

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 114/277 (41%), Positives = 174/277 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F P L+E+P +AE  SH+L+ R GM+ + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MKASELFFPTLREDPAEAETVSHRLLFRAGMVRKTAAGIYTYLPLGFRVIKKIMNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +P +Q  +LW +SGR++ YG EM RL DR+ +    GPTHEEV+TD+   
Sbjct: 61  MDRAGGQEVGLPIIQPRELWAQSGRWEVYGDEMFRLKDRHQRDFCLGPTHEEVITDVVNH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQIQ K+RDE+RPRFG++R REF+MKD YSFD+   G + SY KM+ +
Sbjct: 121 EVHSYRDLPLLLYQIQNKYRDEIRPRFGLLRGREFIMKDLYSFDVDEAGLEVSYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y R+F RLGL+   + A+SG IGG++SHEFIVLA TGE+ +             +     
Sbjct: 181 YCRVFERLGLQYRVVEADSGAIGGNVSHEFIVLAPTGESVIVFCDACEYAANIEKAECIP 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            + +  + +            + +  +F ++P+ ++V
Sbjct: 241 HMSAAENELPLTKVSTPGQKTIQDISVFLNIPDTRQV 277



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 105/191 (54%), Gaps = 3/191 (1%)

Query: 258 ATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  D+ N +  D  P   E K  + RGIE GHIF  GTKYS  M ATF   +GK+  + M
Sbjct: 377 AFCDLRNAEEGDICPVCREGKLKATRGIETGHIFKLGTKYSGKMGATFLDENGKERLMVM 436

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R +AA +E +HD  GIIWP ++AP++I ++ + + D    +   K+Y  L K
Sbjct: 437 GCYGIGISRTMAAAVEQNHDENGIIWPLAIAPYQIIIVPVNSKDGQQMEIGMKLYHELVK 496

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  ++ G +F  ADL+G P+++ +G K +   +VEIK R     + + +E V
Sbjct: 497 QGYEVIIDDRDQRAGVKFKDADLIGVPVRITIGPKLLKAGQVEIKKRWENEVKGVPIEHV 556

Query: 435 INYASHRFSNN 445
                     +
Sbjct: 557 STEVRSILRED 567


>gi|313674626|ref|YP_004052622.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Marivirga
           tractuosa DSM 4126]
 gi|312941324|gb|ADR20514.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Marivirga
           tractuosa DSM 4126]
          Length = 654

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 158/443 (35%), Gaps = 43/443 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      ++ L      +   G+  WLP G    D +   +++ Q + G   +  P
Sbjct: 241 AKKRDHRKLGKEMELFA-FSEKVGLGLPLWLPKGTMLRDRLENFLKKAQVKAGYQPVITP 299

Query: 73  TLQSADLWVESGRYDSYGKEMLRLA-------DRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            + + +L++ SG Y+ YGK+  R          ++D+  +  P +     +I+++  +SY
Sbjct: 300 HIGNKELYITSGHYEKYGKDSFRPIAAPSDDDSKSDEEYLLKPMNCPHHCEIYKTKPRSY 359

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +    +R E      G+ R R F   DA+ F   P+  K  + K+    L +
Sbjct: 360 KDLPLRLAEFGTVYRYEQSGELHGLTRVRSFTQDDAHIFCR-PDQVKEEFIKVIDLVLFV 418

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F+ LG +    +                       +     +  D    S     ++   
Sbjct: 419 FNSLGFEDFVTQVSLRD-------------PDNREKYIGGDEVWDKAEKSIIEAAEEKGL 465

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D     + D+L  + ++    ++                  + G
Sbjct: 466 KTVIELGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERFKLEYVG 514

Query: 305 ADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           AD   H   M          R VA +IE       +                    +   
Sbjct: 515 ADNSKHRPVMIHRAPFGSMERFVAVLIEHCAGNFPLWLSPEQVAVLPI-------SEKYA 567

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+Y+ L       F D   E+IG +   A++   P  +IVG +  ++ KV I+   
Sbjct: 568 DYANKVYSELEANDITGFIDHRDEKIGRKIRDAEINKIPYMLIVGEQEAAEEKVSIRKHG 627

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G   +MSLE+  ++ + + +++
Sbjct: 628 EGDVGNMSLEDFKSFFNQKVTDS 650


>gi|67459371|ref|YP_246995.1| threonyl-tRNA synthetase [Rickettsia felis URRWXCal2]
 gi|73919821|sp|Q4UKU3|SYT_RICFE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|67004904|gb|AAY61830.1| Threonyl-tRNA synthetase [Rickettsia felis URRWXCal2]
          Length = 635

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 151/439 (34%), Gaps = 40/439 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
            Y   + +   RD      +L L      + ++G+  W   G    + +   IR++  + 
Sbjct: 230 NYLFMLEEAEKRDHRKLGRELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKN 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P L    LW  SG ++ + ++M    + +DK +   P +      IF+  IKS
Sbjct: 288 GYTEVKTPVLVDKSLWEASGHWEKFREDMF-ALETDDKTLALKPMNCPCHVQIFKQGIKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +  L  R+E      G+MR R  +  DA+ F    + +  + +        
Sbjct: 347 YRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCAEEQITDETVSF-CKLLTE 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   I ++    P     S E                   D    +     +   
Sbjct: 406 VYKDFGFTDIKVKFSDRPEIRAGSDE-----------------VWDKAENALKEAVEKAG 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              ++     A Y    +     L D++    +     ++    F    +    + A++ 
Sbjct: 449 FTYTLNPGEGAFYGPKLEF---VLTDAIGRQWQCGTLQMD----FVLPER----LDASYI 497

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            A G+      +    +G++     ++   + G+  IW           + I        
Sbjct: 498 AASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPIW------LAPIQVAIATITSDLN 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++   L   G     +   ++I  +         P+  ++G +   +  V I+   
Sbjct: 552 DYALEVQKALIDNGVRTDINISPDKINYKIREFSNQKIPMIAVIGKQEKENKHVTIRRLG 611

Query: 423 TGIREDMSLEEVINYASHR 441
           T  +E +S+E++I      
Sbjct: 612 TTDQEVLSIEQLIALIKKE 630


>gi|85711988|ref|ZP_01043042.1| Prolyl-tRNA synthetase [Idiomarina baltica OS145]
 gi|85694174|gb|EAQ32118.1| Prolyl-tRNA synthetase [Idiomarina baltica OS145]
          Length = 569

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 120/235 (51%), Positives = 165/235 (70%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAEI SH+LMLR GMI + + G+Y+W P G + L  V  ++REE
Sbjct: 1   MRSSQYLLSTLKETPSDAEIVSHQLMLRAGMIRKVASGLYTWTPTGLRVLKKVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  A+E+ +P +Q ADLW ESGR++ YG E+LR+ DR+++  + GPTHEE+++++ R 
Sbjct: 61  MERINALEILMPMVQPADLWQESGRWEDYGPELLRIKDRHERDFLLGPTHEEIISELVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T +QIQ KFRDE+RPRFGVMR+REF+MKDAYSF LT E  + +Y++M+ +
Sbjct: 121 EVSSYKQLPLTLFQIQTKFRDEIRPRFGVMRAREFMMKDAYSFHLTDESLQQAYDEMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA +GE  +  S    D+    E
Sbjct: 181 YCRIFQRLGLDFRPVIADTGSIGGHASHEFHVLAGSGEDAIAFSD-GSDYAANVE 234



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/195 (33%), Positives = 100/195 (51%), Gaps = 3/195 (1%)

Query: 253 TAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A  +A  D+ N    D     +     ARGIEVGHIF  G KYS  M        GK  
Sbjct: 374 DAEISAVEDIRNVVAGDPSPCGQGTLQIARGIEVGHIFQLGKKYSNAMKVGVLSETGKHE 433

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIY 369
            + MG YGIG  RVVAA IE  HD +GI WP+ +APF+++++ +  H     +    ++Y
Sbjct: 434 TLTMGCYGIGVSRVVAAAIEQFHDDRGINWPNELAPFEVAIVPMNMHKSARVQKVANELY 493

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L   G DV +DD  E+ G  F   +L+G P Q+++G + + +  VE + R    ++ M
Sbjct: 494 QQLRDAGFDVLFDDRKERPGVMFTDMELIGVPHQIVIGERNLDEEMVEYQSRSDRDKQKM 553

Query: 430 SLEEVINYASHRFSN 444
            +  V+ + +    N
Sbjct: 554 PINSVLEFLNQTLRN 568


>gi|294339022|emb|CAZ87369.1| proline tRNA synthetase [Thiomonas sp. 3As]
          Length = 576

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 122/237 (51%), Positives = 166/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+   +++P DA++ S  LMLR GMI +H+ G+YS+LPLG +++  V AI+REE
Sbjct: 1   MKISRFFISTQKDDPADADVRSQALMLRAGMIKKHAAGLYSYLPLGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW E+GR D +G E+LR+ DR+D+  +  PT EEV+TD+ RS
Sbjct: 61  MNRAGAIELLMPVVQPAELWQETGRLDQFGPELLRIKDRHDRDFVIQPTSEEVVTDLVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++S+R LP  FY IQ KFRDE RPRFGVMR+REF MKDAYSFD   E ++ SY  MF +
Sbjct: 121 EVRSWRQLPLNFYHIQTKFRDERRPRFGVMRAREFTMKDAYSFDRDFEAAQISYRVMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y+RIF R G +   + A+SG IGG LSHEF V+ADTGE  +   +   DF    E  
Sbjct: 181 YVRIFQRFGFEFRAVAADSGAIGGSLSHEFHVIADTGEDAIAYCE-GSDFAANIEKA 236



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/192 (37%), Positives = 101/192 (52%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N +  D  P+ K V    RGIEVGH+FY GTKYS  M ATF    GK   +
Sbjct: 384 PEPEVADIRNVQAGDPSPDGKGVLSICRGIEVGHVFYLGTKYSAAMGATFLDDKGKSQTL 443

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R++ A IE +HD KG+IWPD++APF   +  I     +  R A + +YA 
Sbjct: 444 EMGCYGIGITRILGACIEQNHDAKGMIWPDAIAPFTAVICPIGYDRSEAVRQAADALYAE 503

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G      +L+G P ++++  + ++   VE +HR       + L
Sbjct: 504 LIAAGVDVALDDRGERPGVMLGDWELIGVPHRMVISDRGLAAGTVEYQHRRESAPTVLPL 563

Query: 432 EEVINYASHRFS 443
            E       R  
Sbjct: 564 AEASAQLQARLQ 575


>gi|296135005|ref|YP_003642247.1| prolyl-tRNA synthetase [Thiomonas intermedia K12]
 gi|295795127|gb|ADG29917.1| prolyl-tRNA synthetase [Thiomonas intermedia K12]
          Length = 576

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 122/237 (51%), Positives = 166/237 (70%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+   +++P DA++ S  LMLR GMI +H+ G+YS+LPLG +++  V AI+REE
Sbjct: 1   MKISRFFISTQKDDPADADVRSQALMLRAGMIKKHAAGLYSYLPLGLRSIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW E+GR D +G E+LR+ DR+D+  +  PT EEV+TD+ RS
Sbjct: 61  MNRAGAIELLMPVVQPAELWQETGRLDQFGPELLRIKDRHDRDFVIQPTSEEVVTDLVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++S+R LP  FY IQ KFRDE RPRFGVMR+REF MKDAYSFD   E ++ SY  MF +
Sbjct: 121 EVRSWRQLPLNFYHIQTKFRDERRPRFGVMRAREFTMKDAYSFDRDFEAAQISYRVMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y+RIF R G +   + A+SG IGG LSHEF V+ADTGE  +   +   DF    E  
Sbjct: 181 YVRIFQRFGFEFRAVAADSGAIGGSLSHEFHVIADTGEDAIAYCE-GSDFAANIEKA 236



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 101/192 (52%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N +  D  P+ K V    RGIEVGH+FY GTKYS  M ATF    GK   +
Sbjct: 384 PEPEVADIRNVQAGDPSPDGKGVLSICRGIEVGHVFYLGTKYSAAMGATFLDDKGKSQTL 443

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           +MG YGIG  R++ A IE +HD KG+IWPD++APF   +  I     +  R A + +YA 
Sbjct: 444 EMGCYGIGITRILGACIEQNHDAKGMIWPDAIAPFTAVICPIGYDRSEAVRQAADALYAE 503

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G      +L+G P ++++  + ++   VE +HR       + L
Sbjct: 504 LIAAGVDVALDDRGERPGVMLGDWELIGVPHRMVISDRGLAAGTVEYQHRRESAPTVLPL 563

Query: 432 EEVINYASHRFS 443
            +       R  
Sbjct: 564 ADACAQLQARLQ 575


>gi|328464763|gb|EGF36081.1| threonyl-tRNA synthetase [Lactobacillus helveticus MTCC 5463]
          Length = 644

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 156/441 (35%), Gaps = 36/441 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD       L L    +  +   G+  W+P G      V   I + +   G  
Sbjct: 232 RRQEIKERDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYQ 289

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + D +  SG +  Y  +M    D  D  M    P +      IF+ HI+SYR
Sbjct: 290 HVYTPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIFKHHIRSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ +  R E      G+ R RE  + D ++F +  +     + K+    + ++
Sbjct: 350 DLPLRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVVLDQVQTE-FAKILKLIMEVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +     R                       + F + +  +          DD+   
Sbjct: 409 KDFDITDYYFRLS-------------YRDPKNTDKYFANDEMWEKSQKMLKGAMDDLGLD 455

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G 
Sbjct: 456 YVEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPDRF----GLTYVGK 504

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG++H    +    +G M    A +   + G    W        +    I  +++   + 
Sbjct: 505 DGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PVQAEIIPVNNEAHGEY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            EK+ A L+K G  V  DD  E++G +   +     P  +++G + +   KV ++   T 
Sbjct: 560 AEKVRAELAKRGFRVEVDDRNEKMGYKIRESQTQKVPYTLVLGDEEMKSGKVNLRRYGTD 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
                SL++ IN       + 
Sbjct: 620 EEISKSLDDFINEIDADVKSY 640


>gi|34303926|ref|NP_689481.2| probable prolyl-tRNA synthetase, mitochondrial precursor [Homo
           sapiens]
 gi|73919761|sp|Q7L3T8|SYPM_HUMAN RecName: Full=Probable prolyl-tRNA synthetase, mitochondrial;
           AltName: Full=Proline--tRNA ligase; Short=ProRS; Flags:
           Precursor
 gi|33873290|gb|AAH11758.2| Prolyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|39644604|gb|AAH07956.2| Prolyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|56204888|emb|CAI18996.1| prolyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|119627074|gb|EAX06669.1| prolyl-tRNA synthetase (mitochondrial)(putative) [Homo sapiens]
 gi|158260381|dbj|BAF82368.1| unnamed protein product [Homo sapiens]
 gi|312152388|gb|ADQ32706.1| prolyl-tRNA synthetase 2, mitochondrial (putative) [synthetic
           construct]
          Length = 475

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 141/438 (32%), Positives = 224/438 (51%), Gaps = 35/438 (7%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           LQ+   D    S +LML+ G+I+  S G Y  LP   +A++ +  +I +E    G  +++
Sbjct: 59  LQDKSDDLTCKSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVN 118

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLP 129
           +P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE +T  I      SY+ LP
Sbjct: 119 MPSLSPAELWQATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLP 178

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
           F  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F++LG
Sbjct: 179 FLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNKLG 238

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L  + ++A+ G IGG +SHEF +  D GE ++                            
Sbjct: 239 LPFVKVQADVGTIGGTVSHEFQLPVDIGEDRLAICPRC---------------------- 276

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               +  A    +   ++     +      +GIEVGH FY GTKYS   +A F    GK 
Sbjct: 277 ----SFSANMETLDLSQMNCPACQGPLTKTKGIEVGHTFYLGTKYSSIFNAQFTNVCGKP 332

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEK 367
              +MG YG+G  R++AA IE       + WP  +AP++  LI  K    +Q   +   +
Sbjct: 333 TLAEMGCYGLGVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEQAASELIGQ 392

Query: 368 IYARLSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHR 421
           +Y  +++       +V  DD     IG++   A+  G+P  +I G + + D    E+  +
Sbjct: 393 LYDHITEAVPQLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALEDPAHFEVWCQ 452

Query: 422 LTGIREDMSLEEVINYAS 439
            TG    ++ + V++  +
Sbjct: 453 NTGEVAFLTKDGVMDLLT 470


>gi|226313026|ref|YP_002772920.1| prolyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|254782888|sp|C0ZF57|SYP_BREBN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226095974|dbj|BAH44416.1| prolyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 581

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 125/293 (42%), Positives = 178/293 (60%), Gaps = 4/293 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DAEIASHKL+LR GM  Q + GIY++LPL  ++L  + AI+REE
Sbjct: 1   MKQSQMLIPTLREVPSDAEIASHKLLLRAGMARQLASGIYTYLPLALRSLHKIQAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +P +Q A+LW ++GR+D YG E++RL DR+D+    GPTHEEV+T + R 
Sbjct: 61  MNNAGGQELLMPAMQPAELWHQTGRWDVYGPELVRLRDRHDRPFALGPTHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE+RPRFG++R REF+MKDAYSFD + +G   ++  M+ +
Sbjct: 121 EINSYKKLPINLYQIQTKFRDEVRPRFGLIRCREFIMKDAYSFDTSQDGLDRNFQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    + A++G IGG  ++EF+ L D GE  +  S++  DF    E  +  
Sbjct: 181 YTNIFTRVGLNFRAVEADAGAIGGKGTYEFMALCDIGEDTIAYSEEG-DFAANLEKAEVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
              S     E   AP          K  D L +  ++ A+ I    I+    K
Sbjct: 240 YKPSAKPATE---APAREKLHTPGIKTIDQLVQALQIEAKQIIKSLIYRVDDK 289



 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 109/202 (53%), Gaps = 2/202 (0%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSAT 301
            L  +V       +  +D+ N    D  P    V    RG+EVGH+F  GTKYS  M AT
Sbjct: 368 HLTHVVAGRDFTVSKYADLRNITEGDECPRTGGVIKFARGVEVGHVFKLGTKYSTAMGAT 427

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +   +G+   + MG YGIG  R +AAVIE ++D  GIIWP SVAPF + +I +    +  
Sbjct: 428 YLDENGRSQPMIMGCYGIGVSRTIAAVIEQNNDENGIIWPVSVAPFHVHVIPVNVKVEEQ 487

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           R A E+I   L K G +V +DD  E+ G +F  ADL+G PL++ V  K   +  VE++ R
Sbjct: 488 RQASEQITEALRKAGIEVLFDDRPERAGVKFKDADLIGLPLRITVSDKAAQEGTVEVRIR 547

Query: 422 LTGIREDMSLEEVINYASHRFS 443
             G   D+ L+++++      S
Sbjct: 548 KNGETHDVKLDQLVDEVKGILS 569


>gi|47222174|emb|CAG11600.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 483

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 150/459 (32%), Positives = 229/459 (49%), Gaps = 47/459 (10%)

Query: 1   MR----RSKYFLPI-LQENPRD---A---EIASHKLMLRTGMIHQHSKGIYSWLPLGQKA 49
           M+     S+ + P  L++  +D          S +LM + G+IH  + G Y +LP   ++
Sbjct: 45  MKPTLLVSRLYQPSNLRDVGQDSFLHGEMTCKSQRLMQQAGLIHPSNPGCYYYLPATVRS 104

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
           ++ +  +I +E    G  ++ +P+L SA+LW  S R+D  GKE+LRL DR+       PT
Sbjct: 105 VEKLIRVIDQEMQEIGGQKLDMPSLCSAELWKASERWDLMGKELLRLKDRHGGDYCLAPT 164

Query: 110 HEE-VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           HEE V T +      SY+ LP   YQI  KFRDE +PRFG++R REF MKD YSFD++ E
Sbjct: 165 HEEAVTTLVAHQTSLSYKQLPLLLYQITRKFRDEPKPRFGLLRGREFYMKDMYSFDVSEE 224

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
            +  +Y  +  +Y R+F RLGL  + ++A++G IGG LSHEF + AD GE ++    +  
Sbjct: 225 AAYQTYESVCQAYTRLFARLGLHCVQVQADTGNIGGKLSHEFQLPADIGEDRLLLCGNCS 284

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
            F    E    D                                    V ++GIEVGH F
Sbjct: 285 -FAANIETVSSDRT------------------------DCPQCRTGTLVESKGIEVGHTF 319

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           Y G KYS   +ATF  A  K    +MG +G+G  R++AA IE     +GI WP  +AP++
Sbjct: 320 YLGKKYSSVFNATFSNAQNKLAEAEMGCFGLGVTRILAAAIEVMSTEEGIRWPGLLAPYQ 379

Query: 349 ISLINIKAHDQVCRD--ACEKIYARL-----SKVGCDVFWDDMGE-QIGSQFAVADLLGF 400
           + ++  K   +V +     E++   L        G +V  DD  +  IG +   A  LG+
Sbjct: 380 VCVVPPKKGSKVDKATIIAEELVQTLTVTLPRLRG-EVVLDDRTQMTIGRRLKDASKLGY 438

Query: 401 PLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYA 438
           P  V+VG   + +    E+  + TG    +S E +++  
Sbjct: 439 PYVVVVGQGALEEPSRFEVICQQTGATMFLSQEGLLDLL 477


>gi|296117435|ref|ZP_06836023.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976037|gb|EFG82827.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
          Length = 642

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 84/438 (19%), Positives = 144/438 (32%), Gaps = 41/438 (9%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +  L+E  R D      ++ L    I + + G   W P G +    +   +R  Q R G 
Sbjct: 233 IHQLEEAERRDHRRIGREMGLF--HIQEEAVGQIFWHPKGWRLYSVLQDYMRRAQTRNGY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            E+  P L    LW  SG +D Y + M     +  DK +   P +      IFR  ++SY
Sbjct: 291 QEVRTPQLVDRGLWEASGHWDKYRQHMFIATVEDEDKTLALKPMNCPCHVQIFRHGLRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R E      G+MR R F   DA+ F    + +              
Sbjct: 351 RELPLRMAEFGACHRYEPSGALHGIMRVRGFTQDDAHIFCTEEQIADE------------ 398

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                  +  +R  S          F V       Q   S D  D    +          
Sbjct: 399 ------TARFVRMLSAVYQDLGFEHFRVKFADRPEQRAGSDDTWDRSENALKEACHMAGV 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D++  + +     ++              + AT+ G
Sbjct: 453 EYEHNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVDYVMP--------ERLDATYVG 501

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D   H    +    +G+      ++   H G+  +W   V     S++           
Sbjct: 502 EDSARHRPVMLHRAILGSFERFLGILIEQHAGRFPMWLAPVQVVVASIVT------DAEP 555

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++  +L   G  V  D   E+I ++     L   P+ ++VG K   +  V ++    
Sbjct: 556 YAREVVEKLQAAGVVVEADVRNEKINAKIREHSLARVPVILVVGRKEAEERTVALRRLGG 615

Query: 424 GIREDMSLEEVINYASHR 441
             +E + L+E +   +H 
Sbjct: 616 KAQEIVPLDEAVTALAHE 633


>gi|237716078|ref|ZP_04546559.1| threonyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262407690|ref|ZP_06084238.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|294643798|ref|ZP_06721596.1| threonine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294808458|ref|ZP_06767211.1| threonine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|229443725|gb|EEO49516.1| threonyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262354498|gb|EEZ03590.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|292640887|gb|EFF59107.1| threonine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294444386|gb|EFG13100.1| threonine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
          Length = 646

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 148/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLILLEEAKKRDHRKIGKEMQLFM-FSETVGKGLPMWLPKGTALRLRLQEFLRRIQTRY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L+V SG Y  YGK+  +        +     P +     +I+++  
Sbjct: 289 DYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEIYKNFP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPEQVKDE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D    + +   D           +   
Sbjct: 408 SIVFRSMDFQNFEAQISLR--------------DKVNREKYIGSDDNWEKAEQAIIEACA 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLPAKIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFEL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G+D + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPEQVVILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  E++   L         DD  E+IG +    ++   P  +IVG K   + +V ++
Sbjct: 557 KFNEYAEQVKMYLKIHEIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M  EE     +    N
Sbjct: 617 RQGEGDKGTMKFEEFAKILNEEVQN 641


>gi|121594741|ref|YP_986637.1| threonyl-tRNA synthetase [Acidovorax sp. JS42]
 gi|166223314|sp|A1W8I6|SYT_ACISJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120606821|gb|ABM42561.1| Ser-tRNA(Thr) hydrolase [Acidovorax sp. JS42]
          Length = 639

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 142/442 (32%), Gaps = 37/442 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I +HS G   W P G      V   +R      G
Sbjct: 231 YLHMLEEAEKRDHRKLGRELDLF--HIDEHSPGTVFWHPKGWTLWQEVEQYMRRVYRDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D Y   M    +   +     P +      IF+  IKSY
Sbjct: 289 YQEVKGPQILDKTLWEKTGHWDKYRDNMFT-TESEKRDYALKPMNCPGHILIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F   D + F                   ++
Sbjct: 348 RDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIFCTEDHILAECTAYT-ALLQKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G  +I  +  + P     S E                   D    +          
Sbjct: 407 YKDFGFHNIIYKVATRPEARIGSDE-----------------SWDKAEHALMESLRASGC 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    +     L D++    +     ++              + A + G
Sbjct: 450 EFEIAPGDGAFYGPKIEY---TLKDAIGRQWQCGTMQVDFSMP--------ERLDAEYVG 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG  H    +    +G++     ++   H G   +W          L    A    CR+
Sbjct: 499 EDGGRHRPVMLHRAIVGSLERFIGILIEEHAGALPVWL--APVQVAVLNITDAQQDYCRE 556

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L   G  V  D   E+I  +     L   P  ++ G K  +   V ++ R  
Sbjct: 557 IAAKLQKALPNQGLRVVTDLRNEKITYKIREHSLQKLPYILVAGDKEKAAGAVAVRARGN 616

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MSL+  ++  +   ++ 
Sbjct: 617 KDLGVMSLDAFVDLIAQDIASK 638


>gi|307719284|ref|YP_003874816.1| threonyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
 gi|306533009|gb|ADN02543.1| threonyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
          Length = 578

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 148/443 (33%), Gaps = 38/443 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L +    +   G+  W P G +    +    RE+    
Sbjct: 168 QYLEHLKEVEKRDHRRLGKELDLFSVH-EEAGPGLIYWHPKGARIRLEIENFWREQHLAR 226

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +  A LW  SG    Y + M    + +       P +      I+++ ++S
Sbjct: 227 GYEVLYTPHIGKAWLWETSGHLSFYKENMYAPMEVDKSDYYIKPMNCPFHIMIYKTRLRS 286

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  + ++   +R E      G++R R F   DA+ F  TPE  +    +     L 
Sbjct: 287 YRELPLRWAELGTVYRYERSGVLHGLLRVRGFTQDDAHIFC-TPEQIEDEILETLRFSLF 345

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   +     + P       E                   +    S     +   
Sbjct: 346 MWETFGFSDVKAYLSTRPEKSVGEPE-----------------RWEQATGSLRKAIEREG 388

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D+   K+ D+L    + S    +    F    ++      T+ 
Sbjct: 389 LDYEVDEGGGAFYGPKIDI---KVRDALGREWQTSTIQFD----FNLPERFD----ITYV 437

Query: 304 GADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            ADG+      +    +G++     ++   + G   +W   V    I +        V  
Sbjct: 438 DADGREKRPYMVHRALLGSLERFFGILIEHYGGAFPVWLAPVQVVVIPV------SDVFA 491

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++   L + G     D   +++ ++   A     P  VIVG +      V ++ R 
Sbjct: 492 GYAQEVVRALREAGVRAEADLSADRMNAKIRKAQQEKIPYAVIVGQREQEGRTVSVRVRG 551

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
              R  ++L   +   + R    
Sbjct: 552 GEQRNGVALGAFVEDVARRMRER 574


>gi|225023763|ref|ZP_03712955.1| hypothetical protein EIKCOROL_00627 [Eikenella corrodens ATCC
           23834]
 gi|224943457|gb|EEG24666.1| hypothetical protein EIKCOROL_00627 [Eikenella corrodens ATCC
           23834]
          Length = 570

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 120/236 (50%), Positives = 160/236 (67%), Gaps = 2/236 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLMLR G+I  ++ G+Y+W+P+G + L  V A++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMLRAGLIKANASGLYTWMPMGLRVLRKVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q ADLW ESGR+D YG E+LR+ DR+D    + PT EE++TDI R 
Sbjct: 61  MNRAGAIELLMPVIQPADLWKESGRWDFYGDELLRITDRHDNTFCFSPTCEELITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFV 179
            I SY+ LP  FY IQ KFRDE RPRFGVMR+REF+MKDAYSF        +  Y  M+ 
Sbjct: 121 EITSYKQLPKNFYHIQTKFRDERRPRFGVMRAREFVMKDAYSFHADYESLVREGYQPMYN 180

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +Y R+F RLGL   P+ A++G IGG  SHEF VLA++GE  +       DF    E
Sbjct: 181 AYCRVFDRLGLDYRPVAADTGSIGGTGSHEFQVLAESGEDVIAY-SSESDFAANIE 235



 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 115/226 (50%), Gaps = 3/226 (1%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVS 278
              +   ++    +     +D            +P    +D+ N    D  P+ K     
Sbjct: 345 KVYADFAVEKLADTVIGANEDDHHYTGFNFGRDSPEPEFADIRNVIAGDPSPDGKGYLKL 404

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KYS  ++A+F   +GK   ++MG YGIG  R+VAA IE ++D +GI
Sbjct: 405 ARGIEVGHVFQLRDKYSAALNASFLDNNGKSQIMEMGCYGIGITRIVAAAIEQNNDERGI 464

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IW +++APF+  ++ +     +  R+A +KIYA L+  G DV  DD  E+ G   A ++L
Sbjct: 465 IWTNAMAPFQAVIVPMNYKKSEAVREAADKIYAELTAAGVDVLLDDRDERAGVLLADSEL 524

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG P ++ +G + + + KVE   R +G  E ++  E+        +
Sbjct: 525 LGIPHRIAIGDRGLKEGKVEYTERRSGETELVAAGEIAAKLKGLLA 570


>gi|73748565|ref|YP_307804.1| threonyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|289432591|ref|YP_003462464.1| threonyl-tRNA synthetase [Dehalococcoides sp. GT]
 gi|123732511|sp|Q3ZXB5|SYT_DEHSC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73660281|emb|CAI82888.1| threonyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|288946311|gb|ADC74008.1| threonyl-tRNA synthetase [Dehalococcoides sp. GT]
          Length = 582

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 154/442 (34%), Gaps = 40/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +    +   G+ +WLP G      +    ++E  + G
Sbjct: 174 YLNMLEEAAKRDHRKLGKELELFSLH-QEIGGGLVNWLPNGAIVRHLIEEFWKKEHLKRG 232

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DLW  SG +  Y + M    D + +  +  P +      +F++  +SY
Sbjct: 233 YDLVYTPHIAKVDLWKTSGHWGFYRENMYSPMDIDGEEYVLKPMNCVYHILMFKNRTRSY 292

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP    ++   +R E      G+ R R F   DA+ F L  +  K     +      +
Sbjct: 293 KELPIRMAELGTVYRYERSGVLHGLSRVRGFTQDDAHIFCLYDQLEKEVVK-VLDLAKFM 351

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     +   + P                  +     D  ++         +    
Sbjct: 352 IDTFGFTKYKVMLSTRP-----------------EKYVGELDKWEYATDILAKALEANQI 394

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +       Y    D+  E   D+L    +     ++    F    ++      +  G
Sbjct: 395 PYQVDPGEGVFYGPKIDIKFE---DALGRTWQGPTIQVD----FQLPERFD----VSVVG 443

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGKD  V  +    +G+M    + +    +  G  +P  ++P ++ +I I        +
Sbjct: 444 EDGKDQPVAMVHRTVLGSMERFMSCLT---EQYGGAFPAWLSPKQVMVIPIADRH---TE 497

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+   L +    V  D   E +  +   A L   P  ++VG K +    V ++ R T
Sbjct: 498 FAEKLACELREEEVRVEVDSRSETMNQKIRQAQLAKIPYMLVVGDKEIETQSVAVRTR-T 556

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G ++ M   E  +    +    
Sbjct: 557 GSQQVMPFAEFKSMLLAKIKTK 578


>gi|319957838|ref|YP_004169101.1| ser-tRNA(thr) hydrolase ;threonyl-tRNA synthetase [Nitratifractor
           salsuginis DSM 16511]
 gi|319420242|gb|ADV47352.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Nitratifractor
           salsuginis DSM 16511]
          Length = 605

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 160/444 (36%), Gaps = 39/444 (8%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +  +++E  R D      +L L      +   G+  WLP G +    +  I+     R
Sbjct: 198 KKWQQMMEEAKRRDHRKLGTELELFM-FNEEAGAGLPFWLPKGARLRSKLEQILWRSHRR 256

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  AD+W  SG Y  YG+ M  L + + +     P +      IF++  K
Sbjct: 257 RGYEPVRGPEILKADMWRTSGHYACYGENM-YLTEIDGQEYGLKPMNCIGHILIFKNSTK 315

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  +++  +  R E      G++R REF   DA+ F  TPE  K    ++     
Sbjct: 316 SYRDLPLKYFEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFC-TPEQIKPVVLEVVEFVD 374

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +  + G                   E+ +   T   +     +  +    +     D+ 
Sbjct: 375 AVMKKFG------------------FEYTMEISTKPEKAIGDDEVWEVATQALKDALDEN 416

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A Y    DV   K+ D++    +     ++    F    ++ +   A  
Sbjct: 417 GLEYGIDEGGGAFYGPKIDV---KITDAIGRKWQCGTVQVD----FNLPERFDVEYVAE- 468

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              + +   V +    +G+     A++   + G+   +        + +           
Sbjct: 469 --DNTRKRPVMIHRAILGSFERFIAILTEHYAGEFPFFIAPTQVIFVPIA------AEHT 520

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++   L +   D    D  + +  +  +A+    P  VIVG + V +  V ++ R 
Sbjct: 521 AYAKELAEALMEREIDSEIYDRNDSLNKRIRLAEKQKVPYVVIVGDEEVKNRSVAVRDRR 580

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
              + ++S ++ +   S      +
Sbjct: 581 KKEQYNLSADDFMLQLSKELQEGK 604


>gi|294500903|ref|YP_003564603.1| prolyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294350840|gb|ADE71169.1| prolyl-tRNA synthetase [Bacillus megaterium QM B1551]
          Length = 565

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 115/252 (45%), Positives = 163/252 (64%), Gaps = 1/252 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DA+I SH+L+LR G + Q++ G+YS+LPLG++ L  V  I+REE
Sbjct: 1   MRQSSTLIPTLREVPADADIKSHQLLLRAGYMRQNASGVYSFLPLGKRVLQKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G++E+ +P LQ A+LW ESGR+ SYG E++R+ DR+ +    G THEEV+T + R 
Sbjct: 61  MDRAGSVELLMPALQQAELWQESGRWYSYGPELMRMKDRHGREFALGATHEEVITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E     Y+KMF +
Sbjct: 121 EVKSYKRLPLNLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASQESLDEVYDKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL    + A+SG +GG  +HEF+VL++ GE  +  S     +    E     
Sbjct: 181 YSRIFERCGLNFRAVIADSGAMGGKDTHEFMVLSEIGEDTIAYSDTSS-YAANVEMAPVV 239

Query: 241 DIISLNSIVEQW 252
           +    +   E+ 
Sbjct: 240 NTYEKSGEAEKE 251



 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 65/192 (33%), Positives = 108/192 (56%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D    +  D  P+ + V    +GIEVGH+F  GT+YS  M AT+   +G++  +
Sbjct: 375 FNATYEDFRFIQEGDQSPDGQGVIKFAKGIEVGHVFKLGTRYSEAMGATYLDENGRNQPM 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R VAA+ E  +D  G++WP++V P+++ +I +   +   R+  EK+Y  L
Sbjct: 435 IMGCYGIGVSRTVAAIAEQFNDENGLLWPEAVTPYQVHVIPVNVKNDEQRELGEKLYNEL 494

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                +V  DD  E+ G +FA +DL+G P++V VG +  S+  VE+K R TG   ++S++
Sbjct: 495 LDNRFEVLLDDRQERAGVKFADSDLIGLPVRVTVGKR-ASEGIVEVKVRKTGESLEVSVD 553

Query: 433 EVINYASHRFSN 444
            +++      + 
Sbjct: 554 NLVSTVKELLAK 565


>gi|288801328|ref|ZP_06406782.1| threonine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331711|gb|EFC70195.1| threonine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 654

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 147/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y L I +   RD      ++ L      +  KG+  WLP G +    +  ++R+ Q R 
Sbjct: 232 EYLLMIEEAKKRDHRKIGKEMELFM-FSDRVGKGMPIWLPKGTELRLRLQDMLRKIQKRF 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G  E+  P L   +L+V SG Y  Y K+  R        +  +  P +     ++F    
Sbjct: 291 GYQEVMCPVLGGKNLYVTSGHYAHYSKDAFRPITTPEEGEEYMLKPMNCPHHCEVFAWKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    +R E      G+ R R F   DA+ F    +        M    
Sbjct: 351 RSYKDLPLRISEFGNVYRYEKSGELHGLTRVRAFTQDDAHIFCRPEQVKNEFLRVM---- 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                        ++A             I L D    + +   D           D   
Sbjct: 407 -----------DIIQAVLKIFDFKNFEAQISLRDPNNKEKYIGSDEAWHEAEQAIIDACK 455

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L +  E    A Y    D     + D++    ++    ++      F          
Sbjct: 456 EKGLTAKSELGEAAFYGPKLDFM---IKDAIGRRWQLGTIQVDYNLPQRF--------KL 504

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D +      +     G++    AV+     G   +W           + I    +
Sbjct: 505 EYTDEDNQKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW------LTPDQVAILPISE 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++       G     DD  E+IG +    +L   P  VIVG K  ++  V ++
Sbjct: 559 KYNDYAREVARFFDNNGVRATIDDRNEKIGRKIRDNELKRVPYMVIVGEKESAEGLVSMR 618

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M+ +E ++  +   + 
Sbjct: 619 KQGGGEQATMTQQEFVDRVNGEVAE 643


>gi|329961279|ref|ZP_08299445.1| threonine--tRNA ligase [Bacteroides fluxus YIT 12057]
 gi|328531944|gb|EGF58761.1| threonine--tRNA ligase [Bacteroides fluxus YIT 12057]
          Length = 646

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 149/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q+R 
Sbjct: 230 EYLVLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRIRLQDFLRRIQSRY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++  
Sbjct: 289 DYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D      +   D           +  +
Sbjct: 408 SIVFQSMAFENFEAQISLR--------------DKVNRDKYIGSDENWEKAEQAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLKAKVEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GAD + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L +       D+  E+IG +    ++   P  ++VG K   + ++ ++
Sbjct: 557 KFNDYALEVKQLLKQYDIRALVDERNEKIGRKIRDNEMKRIPYMLVVGEKEAENKEIAVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M +EE     S    N
Sbjct: 617 KQGEGDQGTMKIEEFAKKVSEEVRN 641


>gi|149200873|ref|ZP_01877848.1| threonyl-tRNA synthetase [Roseovarius sp. TM1035]
 gi|149145206|gb|EDM33232.1| threonyl-tRNA synthetase [Roseovarius sp. TM1035]
          Length = 648

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 145/443 (32%), Gaps = 45/443 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      ++ L    + + + G   W P G      +   +R +Q R G
Sbjct: 236 YLNFLEEADRRDHRKLGREMDLF--HMQEEAPGQVFWHPNGWTVYTTLQDYMRRQQRRGG 293

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-----GPTHEEVMTDIFRS 120
            +E++ P +    LW  SG ++ Y + M  +    D A         P +      IF  
Sbjct: 294 YVEVNTPQVVDRKLWERSGHWEKYQENMFIVEVDEDHAREKAVNALKPMNCPCHVQIFNQ 353

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R E      G+MR R F   DA+ F  T +  +    +   
Sbjct: 354 GLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIFC-TEDQIESETARFIT 412

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+  LG  +  +   + P     S E                   D    +  +  
Sbjct: 413 FLSGIYTDLGFPNFEVLFSTRPDVRAGSDE-----------------VWDKAEAALLSAT 455

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   +     A Y    +     L D++    +     ++    F    +    + 
Sbjct: 456 RAAGIEPKVNPGEGAFYGPKLEF---TLTDAIGRKWQCGTHQVD----FVLPER----LD 504

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A + G DG  H    +    +G+      ++   H G+   W         S++      
Sbjct: 505 ANYIGTDGAKHRPVMLHRAVLGSFERFIGILIEEHAGRLPFWLAPRQVVVASIV------ 558

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   K+   L+ +      D   E+I  +     L   P+ +  G + V D  V +
Sbjct: 559 SEADDYVTKVAQNLTDLNIRAEADTRNEKINYKVREHSLGKVPVILACGPREVEDGTVSL 618

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +         + L++V    +  
Sbjct: 619 RRLGEKDSRIVPLDQVAAELARE 641


>gi|257467949|ref|ZP_05632045.1| prolyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317062235|ref|ZP_07926720.1| prolyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|313687911|gb|EFS24746.1| prolyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
          Length = 569

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 150/435 (34%), Positives = 207/435 (47%), Gaps = 49/435 (11%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AE ASHKL+LR  MI + + G+Y++LPLG KAL  V  I+REE
Sbjct: 1   MRFSKSYIKTLKETPKEAETASHKLLLRASMIKKLTSGVYTYLPLGYKALKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +P LQ A+LW ESGR+D  G  M++L DRN +  + GPTHEEV+TD+ R+
Sbjct: 61  MDRAGSQEILMPVLQPAELWKESGRWDVMGPLMMKLQDRNKRDFVLGPTHEEVVTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  T E     +  M  +
Sbjct: 121 DISSYKALPLSLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHATAESLDEEFLNMRDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------- 232
           Y RIF R GLK  P+ A+SG IGG  S EF VLAD+GE ++                   
Sbjct: 181 YSRIFSRCGLKFRPVEADSGAIGGSGSQEFHVLADSGEDEIIYCDSCSYAANVETAVSRV 240

Query: 233 ---------PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                     +E  D  ++  ++ IV+    PY+ T      +   +  +   V  RG  
Sbjct: 241 EASPVEELKNAELIDTPNVSKIDDIVQFLNIPYSKTVKAMMYRDMGN-DQVYMVLMRGDY 299

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPD 342
             +        +    A     + + H +  G  G  G       VI  +   +      
Sbjct: 300 EVNETKLKNIVNAVEVALLTDEELEKHGLIKGFIGPYGIELGDIKVIADTAVTEINNHTA 359

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYA------------RL-SKVGCDV---------- 379
                    IN+        D    I              +L S  G +V          
Sbjct: 360 GGNKMDTHYINVNYGRDYKADIVADIKTVKVGETCERCGGKLHSARGIEVGHIFKLGDKY 419

Query: 380 -------FWDDMGEQ 387
                  F DD GE 
Sbjct: 420 SKALNATFLDDKGES 434



 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 103/189 (54%), Gaps = 3/189 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+   K+ ++      K  SARGIEVGHIF  G KYS  ++ATF    G+   + MG 
Sbjct: 382 VADIKTVKVGETCERCGGKLHSARGIEVGHIFKLGDKYSKALNATFLDDKGESKVMLMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +A+ IE ++D  GIIWP ++AP+ + +I     ++      E+IY  L   G
Sbjct: 442 YGIGVSRTLASAIEQNNDEFGIIWPTALAPYIVDVIPANVKNEEQVKVAEEIYEALLNDG 501

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            D   DD  E+ G +F  ADL+GFP +V+ G +   +  VE+K R TG   ++S ++V++
Sbjct: 502 IDSMIDDRDERPGFKFKDADLIGFPFKVVSGKR-AGEGIVELKIRRTGETLEISKDDVVS 560

Query: 437 YASHRFSNN 445
                    
Sbjct: 561 TVRELMKKY 569


>gi|254429307|ref|ZP_05043014.1| threonyl-tRNA synthetase [Alcanivorax sp. DG881]
 gi|196195476|gb|EDX90435.1| threonyl-tRNA synthetase [Alcanivorax sp. DG881]
          Length = 638

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 82/427 (19%), Positives = 148/427 (34%), Gaps = 39/427 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD    + ++ L    I Q + G   W P G +   N+   IR +  + G  E
Sbjct: 236 QIEEAEKRDHRKLAREMGLF--HIQQEAVGSMFWHPKGWRMRQNLENYIRGKMEKGGYQE 293

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +S P +    LW +SG +D YG++M  +   + K M   P +      IF+  I SYR+L
Sbjct: 294 VSTPQMMDRILWEQSGHWDKYGEDMFTVCTHDHKEMAVKPMNCPGHVQIFKQGITSYRDL 353

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +    FR+E      G+MR+R F   DA+ F  T E               ++  
Sbjct: 354 PIRLGEFTTLFRNEAHGALHGLMRARSFSQDDAHIFC-TEEQINEETAGFIKMLREVYED 412

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G  S  ++    P     S E                   D    +  +  + +     
Sbjct: 413 FGFDSFRIKFSDRPDNRAGSDE-----------------TWDKAEGALRSAVESLGLECE 455

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           +     A Y    +     L D++  + +     ++    F    +    + A +   DG
Sbjct: 456 LNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVD----FVLPDR----LDAEYVAEDG 504

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                  +    +G++     ++  S  G   +W         ++ N         +   
Sbjct: 505 SRQRPVMLHRAVLGSLERFLGILIESTAGHLPLWLAPRPVAICTITN------SADEYAT 558

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +  +L   G     D   E+IG +         P   ++G +    ++V I+   +   
Sbjct: 559 AVQQKLVAAGVPAELDIRNEKIGFKVREHSRAKTPRIWVIGEQEAQQNQVAIRTLGSQAT 618

Query: 427 EDMSLEE 433
           E M L+E
Sbjct: 619 ETMDLDE 625


>gi|161831126|ref|YP_001597175.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 331]
 gi|161762993|gb|ABX78635.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 331]
          Length = 660

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 148/447 (33%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD  + + K+ L        S G   W P G   +  +   IR+ 
Sbjct: 235 KALKAYLYRLEEAEKRDHRLLAKKMDLF--HFQPESPGNVFWHPNGWSIILQMREYIRQI 292

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+  P L  A LW +SG  + +G ++  L     +  +  P        IF  
Sbjct: 293 THKYGYQEVHTPQLIDASLWDKSGHLEKFGDDIFSLPLEP-QQYVIKPMSCPAHVQIFNQ 351

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP  + +     R+E      G+MR R F+  DA+ F    +      +    
Sbjct: 352 GVKSYRDLPLRYAEFGACHRNEPSGTLHGLMRLRGFVQDDAHIFCTEDQIQSE-VSAFID 410

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G   +  +  + P     S E    A+    +    K      +P E    
Sbjct: 411 QLHEVYADFGFTEVIHKLSTRPEKRVGSDEVWTKAEQALAEALNRKGVEWDILPGE---- 466

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                         A Y    +     L D L    +     ++       G        
Sbjct: 467 -------------GAFYGPKIEF---SLRDCLGRIWQCGTVQVDFSVPERLG-------- 502

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   DG       +    +G+      ++     GK  +W   V    +++       
Sbjct: 503 AHYIAEDGSKKPPVMIHRAILGSFERFLGILLEESAGKLPLWLAPVQVVVMNIT------ 556

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   +    L  +G     D   E+IG +     +   P  V++G + V+D  + +
Sbjct: 557 DRQADYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREVADKTLSV 616

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           +         ++LEE         S  
Sbjct: 617 RALEDEASTTITLEEFARQLKAEISQR 643


>gi|87121381|ref|ZP_01077270.1| prolyl-tRNA synthetase [Marinomonas sp. MED121]
 gi|86163224|gb|EAQ64500.1| prolyl-tRNA synthetase [Marinomonas sp. MED121]
          Length = 575

 Score =  236 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 122/235 (51%), Positives = 160/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y    L+  P DA + SHKLM+R GMI Q SKG+Y+WLP G K    V  I+REE
Sbjct: 1   MRASNYLFSTLRNPPTDAVVTSHKLMMRAGMIRQVSKGLYTWLPTGLKVFRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q  +LW ESGR+  YG E+LR+ DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MQRAGALEIIMPGVQPKELWEESGRWQEYGPELLRIKDRHERDYCLGPTHEEVVTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   +QIQ KFRDE+RPRFGVMRSREF+MKDAYSF  +PE  + +Y+ M  +
Sbjct: 121 EISSYKQLPLNLFQIQTKFRDEVRPRFGVMRSREFMMKDAYSFHSSPESLQTTYDVMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y ++F R+GL   P+RA++G IGG  SHEF VLA++GE  +  S    DF    E
Sbjct: 181 YCKVFDRVGLNYRPVRADTGSIGGAFSHEFHVLAESGEDDIAFSDS-SDFAANIE 234



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 76/189 (40%), Positives = 110/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ K V    RGIEVGHIF  G KY+  ++A     +GK   + MG
Sbjct: 387 EVADIRNVVAGDPSPDGKGVIEIKRGIEVGHIFQLGQKYADALNANVLDENGKAQTMWMG 446

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSK 374
            YGIG  RVVAA IE + D KGI+WPD++APF++S++ +K    +  R+  ++IYA L  
Sbjct: 447 CYGIGVSRVVAAAIEQNFDDKGILWPDAIAPFQVSIVAMKYEKSEAVREQADRIYAELQA 506

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD     G +FA A+LLG P +V++  K +    +E KHR TG  +D+SL+ +
Sbjct: 507 AGVDVMLDDRKASPGVKFADAELLGIPHRVVISDKGLEKGTIEYKHRRTGDNDDLSLDSL 566

Query: 435 INYASHRFS 443
           +     R +
Sbjct: 567 VKTLISRLN 575


>gi|332528434|ref|ZP_08404426.1| prolyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
 gi|332042113|gb|EGI78447.1| prolyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
          Length = 581

 Score =  236 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 115/237 (48%), Positives = 158/237 (66%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++ +  L+E P DAE+ SH+LM R GMI +   GIY+++P+G + ++ V AI+REE
Sbjct: 1   MKASQFLISTLKEAPADAEVVSHQLMTRAGMIKKLGAGIYTYMPMGLRVINKVAAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+++P +Q A+LW E+GR++  G E+LR+ DR+++  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAIELTMPVIQPAELWQETGRFEKMGPELLRIQDRHERDFVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY+ LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSFD  P  ++ SY  M  +
Sbjct: 121 EFKSYKQLPRNLYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDPASAQISYQAMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y   F R GL+   + A+SG IGGDLS EF V+A TGE  +       D+    E  
Sbjct: 181 YRAAFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIIYCPT-SDYAANIEKA 236



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 77/190 (40%), Positives = 109/190 (57%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+ N    D  P+ K V    RGIE+GHIFY GTKYS  M+ATF   +GK  + +M
Sbjct: 391 ALVADLRNVVEGDLSPDGKGVLAIERGIEIGHIFYLGTKYSKAMNATFLDENGKPQFFEM 450

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLS 373
           G YGIG  R+ AA IE +HD KGIIWPD++APF + +  I        + A EK+YA L 
Sbjct: 451 GCYGIGITRLPAAAIEQNHDAKGIIWPDAIAPFTVVVCPINPDRSPEVKTAAEKLYAELL 510

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G DV  DD GE+ G+ FA  +L+G P +V +G + + + KVE +HR       +++ +
Sbjct: 511 AAGVDVILDDRGERPGAMFADWELIGVPHRVTIGDRTLKEGKVEYQHRRDAEATPLAVGD 570

Query: 434 VINYASHRFS 443
              +   +  
Sbjct: 571 AAAFVLGKLK 580


>gi|196247600|ref|ZP_03146302.1| Proline--tRNA ligase [Geobacillus sp. G11MC16]
 gi|196212384|gb|EDY07141.1| Proline--tRNA ligase [Geobacillus sp. G11MC16]
          Length = 271

 Score =  236 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 119/235 (50%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P  +E P DAE+ SH+L+LR G + Q + G+Y++LPLGQ+ L  V AIIREE
Sbjct: 1   MRQSQGFIPTFREVPADAEVKSHQLLLRAGFVRQSASGVYTFLPLGQRVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P LQ A+LW +SGR+ SYG E++RL DR+++  + GPTHEE++T I R 
Sbjct: 61  MNRAGALELLMPALQPAELWQQSGRWYSYGPELMRLKDRHERDFVLGPTHEEMITTIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +YNKM+ +
Sbjct: 121 EVKTYKRLPLILYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHTSQESLDETYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E
Sbjct: 181 YANIFRRCGLNFRAVIADSGAMGGKDTHEFMVLSDIGEDTIAYSD-ASDYAANIE 234


>gi|332983243|ref|YP_004464684.1| prolyl-tRNA synthetase [Mahella australiensis 50-1 BON]
 gi|332700921|gb|AEE97862.1| prolyl-tRNA synthetase [Mahella australiensis 50-1 BON]
          Length = 569

 Score =  236 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 120/269 (44%), Positives = 166/269 (61%), Gaps = 1/269 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F   L+E P +AEI SH+LMLR G++ + + GIY++LPLG++ L  V  I+REE
Sbjct: 1   MKMSEMFFTTLRETPSEAEIPSHQLMLRAGLMRKLASGIYNYLPLGKRVLKKVEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++TGA E+    L  A+LW E+GR+D +G EM +L DRN++    GPTHEE+ TDI R+
Sbjct: 61  MDKTGAQEILASALLPAELWKETGRWDVFGPEMFKLKDRNEREFCLGPTHEEIFTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LPF  YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   +G   SY KM+ +
Sbjct: 121 EIKSYKQLPFNLYQIQTKYRDEKRPRFGVMRSREFIMKDAYSFDKDWDGLDISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R  LK   + A++G +GG  S+EF+V +D GE +V    +   +    E     
Sbjct: 181 YCAIFDRCDLKYWVVDADTGAMGGKDSNEFMVSSDVGEAEVAYCDEC-GYAANIEKAPCV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           +        E+     A       ++L  
Sbjct: 240 NRPIHAEEAEKEIKKVATPDVKTVDELMH 268



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/188 (36%), Positives = 103/188 (54%), Gaps = 3/188 (1%)

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N ++ D  P+  +     RGIEVGHIF  GTKY+  + AT+   +G++  + MG
Sbjct: 379 VVADIRNIEVGDPCPKCGKPINIARGIEVGHIFKLGTKYTEALGATYLDENGQEQPIIMG 438

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R VAA+IE  HD +GIIWP SV P+ + ++    +      A EKI+  L   
Sbjct: 439 CYGIGINRTVAAIIEQHHDDRGIIWPMSVTPYHVIIVVASNYQPEQIQAAEKIHYELVSR 498

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G +F  ADL+G P+++ VG K +S   VE K R      D+ + +++
Sbjct: 499 GIEVLLDDRDERAGVKFNDADLIGIPIRITVGKK-ISAGMVEFKRRDKADSIDIPVSDIV 557

Query: 436 NYASHRFS 443
           +       
Sbjct: 558 DKVIAEIK 565


>gi|325473136|gb|EGC76332.1| threonyl-tRNA synthetase [Treponema denticola F0402]
          Length = 585

 Score =  236 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 157/441 (35%), Gaps = 38/441 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       + L    I + + G   W P G      +   +R+     G
Sbjct: 174 YLAMLEEAEKRDHRKVGKAMNLF--HIDEENPGQVFWHPKGWTLYLTIQNYVRKRIKEDG 231

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG +  Y + M  + +   +     P +     +IF+  IKSY
Sbjct: 232 YLEVHTPFVMPRSLWERSGHWAKYKENMF-ITESEKRLFALKPMNCPGHVEIFKQGIKSY 290

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +     R+E      G+MR R F+  DA+ F    + S    +K      R+
Sbjct: 291 KDLPLRLAEFGSCTRNEPSGSLHGIMRIRGFVQDDAHIFCTEEQISSE-VSKFCALLKRM 349

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G                   + +V   T   Q        D    + +    D   
Sbjct: 350 YADFGF---------------AEDKILVKFSTRPEQRVGDDATWDRAEKALSDACADAGL 394

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK- 303
              I E   A Y    +     L D+L    +     ++           +  ++A +  
Sbjct: 395 KYEIAEGEGAFYGPKLEF---TLIDALGREWQCGTIQLDYQLP------SAERLNAEYIG 445

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             + K H V +    +G++     ++  +  G    W   V    + +           +
Sbjct: 446 DDNNKHHPVMLHRAVLGSLERFIGILIENCAGIMPPWLAPVQAVIVPVAP------AFNE 499

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L + G  V  D   +++ ++           Q+IVG   + ++ V ++ R  
Sbjct: 500 YAQKVQKVLDEKGFRVIADIGTDRMNAKIRKHQEEKVIYQLIVGQSEMDNNSVAVRMRKG 559

Query: 424 GIREDMSLEEVINYASHRFSN 444
           G ++ M+L+E I++   +  +
Sbjct: 560 G-QKVMTLDEFISFLKDKVDS 579


>gi|291286279|ref|YP_003503095.1| prolyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883439|gb|ADD67139.1| prolyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
          Length = 570

 Score =  235 bits (600), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 129/241 (53%), Positives = 164/241 (68%), Gaps = 1/241 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYF+P L+E P DAE+ SHKLM R GMI + + GIYS+LPLG   +  V  I+R+ 
Sbjct: 1   MRYSKYFIPTLREVPADAEVVSHKLMARAGMIKKVASGIYSYLPLGLVVIKKVEDIVRKC 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   A+E+ +P++Q A+LW ESGR+D YGKE+LR+ DR+++   YGPTHEEV TDI RS
Sbjct: 61  MNEADAVELMMPSVQPAELWQESGRWDFYGKELLRIKDRHNREFCYGPTHEEVTTDIIRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+   G+  SY KM+ +
Sbjct: 121 YINSYKALPVNLYQIQTKFRDEVRPRFGLMRGREFIMKDAYSFDMDDAGANISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF   GL+   + A+SG IGG  SHEF+VLA TGE  V       D+    E     
Sbjct: 181 YRRIFEMCGLRYKVVDADSGAIGGSFSHEFMVLASTGEDFVISCNSC-DYSANVEKATVR 239

Query: 241 D 241
            
Sbjct: 240 K 240



 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 73/191 (38%), Positives = 106/191 (55%), Gaps = 2/191 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           + +  D  N +  D   E        +GIEVGHIF  GTKYS  M+A +   DGK     
Sbjct: 376 FESVDDFRNAEAGDVCCECGGTYEITKGIEVGHIFKLGTKYSSSMNAMYLDKDGKRKPFV 435

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  RVVAA IE +HD KGI+WP ++APFKI ++ +   DQ   +  E IY  L 
Sbjct: 436 MGCYGIGITRVVAAAIEQNHDEKGIVWPVNLAPFKICVLPLAMKDQEVSETAENIYKDLI 495

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V  DD  E+ G +F  A+L+G PL+V++G K ++  K+E+  R +G   ++ +E 
Sbjct: 496 NKGVEVLLDDRDERPGVKFNDAELIGIPLRVVIGKKTLAQGKIEVTVRASGESYEVDVEG 555

Query: 434 VINYASHRFSN 444
            ++    +   
Sbjct: 556 CVDVLLQKLEE 566


>gi|239817181|ref|YP_002946091.1| prolyl-tRNA synthetase [Variovorax paradoxus S110]
 gi|259511631|sp|C5CXW9|SYP_VARPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|239803758|gb|ACS20825.1| prolyl-tRNA synthetase [Variovorax paradoxus S110]
          Length = 581

 Score =  235 bits (600), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 120/237 (50%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ASH+LM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASRFFVSTLKEAPADAEVASHRLMMRAGMIKKLGTGIYTYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A+ W E+GR+D  G E+LR+ DR+D+  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVELTMPVVQPAEFWQETGRFDKMGPELLRIKDRHDRDFVVQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + +K SY  M  +
Sbjct: 121 EIRSYKQLPKNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDLDAAKASYQAMADA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL+   + A+SG IGGDLS EF V+A TGE  +       D+    E  
Sbjct: 181 YRRIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYC-PGSDYAANMEKA 236



 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/188 (36%), Positives = 108/188 (57%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D+ P+ K V    RGIEVGH+F  GTKYS  M+AT+    GK  +++MG 
Sbjct: 393 VADLRNVVAGDASPDGKGVLAIERGIEVGHVFVLGTKYSKDMNATYLDEAGKPQFLEMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           YGIG  R+ AA IE +HD +GIIWPD++APF + +  I        + A E +Y +L   
Sbjct: 453 YGIGITRLPAAAIEQNHDERGIIWPDALAPFTVVVCPIGMDRSPEVKVAAEALYEQLLAA 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD GE+ G+ FA  +L+G P +V++  + + + ++E +HR       +    + 
Sbjct: 513 GVDVLLDDRGERPGAMFADWELIGVPHRVVISDRGLKEGQLEYQHRRDTAATKVPAAGIA 572

Query: 436 NYASHRFS 443
            + + +F+
Sbjct: 573 EFIAGKFA 580


>gi|222110646|ref|YP_002552910.1| threonyl-tRNA synthetase [Acidovorax ebreus TPSY]
 gi|254783520|sp|B9MHX8|SYT_DIAST RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221730090|gb|ACM32910.1| threonyl-tRNA synthetase [Acidovorax ebreus TPSY]
          Length = 639

 Score =  235 bits (600), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 143/444 (32%), Gaps = 37/444 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    I +HS G   W P G      V   +R     
Sbjct: 229 QQYLHMLEEAEKRDHRKLGRELDLF--HIDEHSPGTVFWHPKGWTLWQEVEQYMRRVYRD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +D Y   M    +   +     P +      IF+  IK
Sbjct: 287 NGYQEVKGPQILDKTLWEKTGHWDKYRDNMFT-TESEKRDYALKPMNCPGHILIFKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F   D + F                   
Sbjct: 346 SYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIFCTEDHILAECTAYT-ALLQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G  +I  +  + P     S E                   D    +        
Sbjct: 405 KVYKNFGFHNIIYKVATRPEARIGSDE-----------------SWDKAEHALMESLRAS 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I     A Y    +     L D++    +     ++              + A +
Sbjct: 448 GCEFEIAPGDGAFYGPKIEY---TLKDAIGRQWQCGTMQVDFSMP--------ERLDAEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG  H    +    +G++     ++   H G   +W          L    A    C
Sbjct: 497 VGEDGGRHRPVMLHRAIVGSLERFIGILIEEHAGALPVWL--APVQVAVLNITDAQQDYC 554

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           R+   K+   L   G  V  D   E+I  +     L   P  ++ G K  +   V ++ R
Sbjct: 555 REIAAKLQKALPNQGLRVVTDLRNEKITYKIREHSLQKLPYILVAGDKEKAAGAVAVRAR 614

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MSL+  ++  +   ++ 
Sbjct: 615 GNKDLGVMSLDAFVDLIAQDIASK 638


>gi|295706249|ref|YP_003599324.1| prolyl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294803908|gb|ADF40974.1| prolyl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 565

 Score =  235 bits (600), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 116/252 (46%), Positives = 163/252 (64%), Gaps = 1/252 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DA+I SH+L+LR G + Q+S G+YS+LPLG++ L  V  I+REE
Sbjct: 1   MRQSSTLIPTLREVPADADIKSHQLLLRAGYMRQNSSGVYSFLPLGKRVLQKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G++E+ +P LQ A+LW ESGR+ SYG E++R+ DR+ +    G THEEV+T + R 
Sbjct: 61  MDRAGSVELLMPALQQAELWQESGRWYSYGPELMRMKDRHGREFALGATHEEVITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E     Y+KMF +
Sbjct: 121 EVKSYKRLPLNLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASQESLDEVYDKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL    + A+SG +GG  +HEF+VL++ GE  +  S     +    E     
Sbjct: 181 YSRIFERCGLNFRAVIADSGAMGGKDTHEFMVLSEIGEDTIAYSDTSS-YAANVEMAPVV 239

Query: 241 DIISLNSIVEQW 252
           +    +   E+ 
Sbjct: 240 NTYEKSGEAEKE 251



 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 65/192 (33%), Positives = 107/192 (55%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D    +  D  P+ + V    +GIEVGH+F  GT+YS  M AT+   +G+   +
Sbjct: 375 FNATYEDFRFIQEGDQSPDGQGVIKFAKGIEVGHVFKLGTRYSEAMGATYLDENGRSQPM 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R VAA+ E  +D  G++WP++V P+++ +I +   +   R+  EK+Y  L
Sbjct: 435 IMGCYGIGVSRTVAAIAEQFNDENGLLWPEAVTPYQVHVIPVNVKNDEQRELGEKLYNEL 494

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                +V  DD  E+ G +FA +DL+G P++V VG +  S+  VE+K R TG   ++S++
Sbjct: 495 LDNRFEVLLDDRQERAGVKFADSDLIGLPVRVTVGKR-ASEGIVEVKVRKTGESLEVSVD 553

Query: 433 EVINYASHRFSN 444
            +++      + 
Sbjct: 554 NLVSTVKELLAK 565


>gi|323137534|ref|ZP_08072611.1| threonyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
 gi|322397160|gb|EFX99684.1| threonyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
          Length = 643

 Score =  235 bits (600), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 147/429 (34%), Gaps = 37/429 (8%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      ++ L      +   G   W P G      + + +R  Q   G
Sbjct: 232 YLHRLEEAERRDHRRLGREMDLF--HFQEEGPGAIFWHPKGWTLFQTLVSYMRRRQKAAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E++ P +    LW  SG + +Y + M      +++     P +      IF++ +KSY
Sbjct: 290 YTEVNTPQVLDRALWETSGHWQTYRENMFVTKTEDERIFALKPMNCPGHVQIFKNGLKSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R E      G+MR R F   DA+ F    +    +        L I
Sbjct: 350 RDLPVKIAEFGVVHRYEPSGALHGMMRVRAFTQDDAHIFCSEDQIMDEALKIN-DLILTI 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++  + P     S E    A+    +V       +       T       
Sbjct: 409 YRDFGFDDVVVKLSTRPEKRVGSDEAWDKAEAALGKVL-----DELARRGLKTSIQ---- 459

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    +     L D++    +     ++      FG        A + G
Sbjct: 460 -----EGEGAFYGPKLEY---TLRDAIGREWQCGTTQVDFNLPVRFG--------AFYIG 503

Query: 305 -ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               K   V +     G++     ++     G   +W   +     ++       Q   D
Sbjct: 504 ADSDKKIPVMIHRAMFGSLERFTGILIEHFAGHLPLWLSPLQIVICTIT------QEADD 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A   K+G +V  D   E+I  +     L   P+ ++ G K  ++  + I+   +
Sbjct: 558 YAYEVAAAARKLGLNVDIDARNEKITYKVREHSLAKVPVLLVAGKKEAAERTISIRRLGS 617

Query: 424 GIREDMSLE 432
             +  M ++
Sbjct: 618 QQQTQMGID 626


>gi|330819285|ref|YP_004348147.1| threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327371280|gb|AEA62635.1| threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 682

 Score =  235 bits (600), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 144/435 (33%), Gaps = 39/435 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + Q   RD      +L L      + + G   W P G      + A +R  Q     +E
Sbjct: 253 RLEQAERRDHRRLGRELDLF--HFQEDAPGAVFWHPRGWTVFRELIAYMRRRQEEAAYVE 310

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           ++ P +    LW  SG + +Y   M   A  + +++   P +      ++R  +KSYR+L
Sbjct: 311 VNSPDVMDRSLWEISGHWLNYRDHMFTTATEDGRSLALKPMNCPGSVLLYRHGLKSYRDL 370

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +     R E      G++R R F   DA+ +  TP         +    L I+ +
Sbjct: 371 PIRMGEFGKVHRYEPSGALHGLLRVRHFTQDDAHIYC-TPAQMDQECRAVVALVLDIYRQ 429

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G + + ++  + P                       +   D    +     D +     
Sbjct: 430 FGFEEVRIKLSTRPANR-----------------MGDEATWDRLEGALVNALDAMGLDYR 472

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           +     A Y    +     L D++  + +     +++     FG          +   DG
Sbjct: 473 LNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVDMNLPERFG--------IEYVDEDG 521

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           +      +     G++     ++    +      P  +AP +  +++I    +   D   
Sbjct: 522 QRKRPVMLHRALFGSLERFIGILI---EHHAGKLPPWLAPVQAMVLSI---SEEHADYAR 575

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L+  G     D   E+IG +     L   P  ++ G++      + I+ R     
Sbjct: 576 NVAQWLAASGLRAEADLRREKIGYKIREQTLQRIPFLLVAGTRERETGSIAIRSRGGLDL 635

Query: 427 EDMSLEEVINYASHR 441
             + L + +      
Sbjct: 636 GTLPLAQAVALLVDE 650


>gi|319405749|emb|CBI79372.1| Threonyl-tRNA synthetase [Bartonella sp. AR 15-3]
          Length = 654

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 151/445 (33%), Gaps = 39/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L      + S G+  W P G K   N+ + +R   + 
Sbjct: 233 KAYLHMLEEAEKRDHRRLGREMDLF--HFQEESPGMIFWHPKGWKMFQNLISYMRRRLDN 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIF 118
               E+  P +    LW  SG ++ Y + M +     D           P +      IF
Sbjct: 291 HKYAEVQAPQVLDKSLWEISGHWEWYKENMFKTIPAADDWNNEHIYALKPMNCPGHVQIF 350

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  L  R E      G+MR R F   DA+ F    + +    +  
Sbjct: 351 KHGLKSYRDLPIRLAEFGLVHRYEPSGSLHGLMRVRSFTQDDAHIFCTEEQLADECLSIN 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G K I ++  + P     S E    A++  T V  +          E  
Sbjct: 411 -DLILSTYADFGFKEISIKLSTRPEKRVGSDELWDHAESIMTFVLKT---------IEKK 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               +    SI+    A Y    +     L D++    +     ++      FG      
Sbjct: 461 FSGRVKI--SILPGEGAFYGPKFEY---TLTDAIGREWQCGTTQVDFNLPERFG------ 509

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   D +      +     G+M     ++  +  G    W         ++     
Sbjct: 510 --AFYIDKDSEKRQPVMIHRAIFGSMERFLGILIENFSGHIPFWLAPQQIVVATIT---- 563

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  +KI  +L  +G     D   E+I  +     L   P+ ++ G +    + V
Sbjct: 564 --SDSNEYAKKITEKLKAIGLLATLDSRNEKINYKIREHFLQKIPVILVCGKREAETNSV 621

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +  + +E+V       
Sbjct: 622 NMRRLGSVKQTFLPIEKVFQQLLDE 646


>gi|269101961|ref|ZP_06154658.1| prolyl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161859|gb|EEZ40355.1| prolyl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 572

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 119/277 (42%), Positives = 165/277 (59%), Gaps = 5/277 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEIISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHARPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN---- 236
           Y + F R+GL+  P+ A+SG IGG+ S EF VLA++GE  +       D+    E     
Sbjct: 181 YCKAFDRMGLEYRPVWADSGAIGGNGSQEFHVLAESGEDLIAF-STESDYAANIEKAEAL 239

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               D  +    +     P A T D   E+   ++ +
Sbjct: 240 APAHDRAAPTVELSVIDTPNAKTIDELVEQHGIAIEK 276



 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/195 (34%), Positives = 118/195 (60%), Gaps = 3/195 (1%)

Query: 253 TAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                   D+ N    D     +   +  RGIEVGHIF  GT YS  M+     ++GK+ 
Sbjct: 378 DVALGRVEDLRNVVEGDPSPCGQGTLMLKRGIEVGHIFQLGTTYSEKMNCGVLDSNGKNV 437

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIY 369
            ++MG YGIG  RVVA+ IE ++D  GIIWPD++APF++S++ +     +  ++A EK+Y
Sbjct: 438 ILEMGCYGIGVSRVVASAIEQNNDENGIIWPDAIAPFQVSIVPMNMAKSEEVKEAAEKLY 497

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A L+  G DV +DD  E+ G  FA  +L+G P  +++G++ + + ++E K+R TG +E++
Sbjct: 498 ADLTAAGIDVLFDDRKERPGVMFADHELIGIPHTIVIGNRSLENGEMEYKNRRTGTKENV 557

Query: 430 SLEEVINYASHRFSN 444
           ++ +++ + + + +N
Sbjct: 558 AVTDIVAFVTSKLAN 572


>gi|306841798|ref|ZP_07474483.1| threonyl-tRNA synthetase [Brucella sp. BO2]
 gi|306288128|gb|EFM59518.1| threonyl-tRNA synthetase [Brucella sp. BO2]
          Length = 661

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 152/445 (34%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 236 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 293

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 294 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 353

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 354 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLRIN 413

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 414 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 460

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 461 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 511

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 512 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 565

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 566 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 623

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 624 NMRRLGSRDQESMTLDEAIARLCEE 648


>gi|294664482|ref|ZP_06729831.1| prolyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605740|gb|EFF49042.1| prolyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 621

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 115/223 (51%), Positives = 152/223 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 58  MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 117

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 118 MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 177

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 178 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 237

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  
Sbjct: 238 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAF 280



 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 1/166 (0%)

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            +   ARGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +H
Sbjct: 454 GELRLARGIEVGHVFQLGSQYAQALQATVIDEGGKAAVMKMGCYGIGISRIVAAAIEQNH 513

Query: 334 DGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           D  GIIWP  +AP+++ +  I    D     A + +  +L   G D   DD G + G+ F
Sbjct: 514 DDAGIIWPAPMAPWQVVVCVINPKQDPQVLAAAQALLDQLLAAGLDAALDDRGLRPGAMF 573

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           A  +LLG P +V+V  + ++    E + R     E +    + +  
Sbjct: 574 ADMELLGIPHRVVVSERGLAAGTFEYRARTADAAESLDKAGLFSRL 619


>gi|294625222|ref|ZP_06703863.1| prolyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292600496|gb|EFF44592.1| prolyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 621

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 115/223 (51%), Positives = 152/223 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 58  MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 117

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 118 MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 177

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 178 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 237

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  
Sbjct: 238 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAF 280



 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 1/166 (0%)

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            +   ARGIEVGH+F  G++Y+  + AT     GK   ++MG YGIG  R+VAA IE +H
Sbjct: 454 GELRLARGIEVGHVFQLGSQYAQALQATVIDEGGKAAVMKMGCYGIGISRIVAAAIEQNH 513

Query: 334 DGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           D  GIIWP  +AP+++ +  I    D     A + +  +L   G D   DD G + G+ F
Sbjct: 514 DDAGIIWPAPMAPWQVVVCVINPKQDPQVLAAAQALLDQLLAAGLDAALDDRGLRPGAMF 573

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           A  +LLG P +V+V  + ++    E + R     E +    + +  
Sbjct: 574 ADMELLGIPHRVVVSERGLAAGTFEYRARTADAAESLDKAGLFSRL 619


>gi|221194513|ref|ZP_03567570.1| prolyl-tRNA synthetase [Atopobium rimae ATCC 49626]
 gi|221185417|gb|EEE17807.1| prolyl-tRNA synthetase [Atopobium rimae ATCC 49626]
          Length = 571

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 115/260 (44%), Positives = 163/260 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S  + P L+E+P +A +ASH+L+LR GMI + + G+YS+LPL  ++L  +  IIR+E 
Sbjct: 6   KMSSLYAPTLKEDPAEAVLASHRLLLRAGMIRKTAAGLYSYLPLAWRSLRKIEEIIRDEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ VP L  A+LW ESGR+D YG E++RL DR+++    GPTHEE  TD+ R+ 
Sbjct: 66  DGIGAQEILVPILTPAELWEESGRWDVYGPELMRLHDRHERKFALGPTHEETFTDLVRNE 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +KSY+ LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  T E  +  Y+    +Y
Sbjct: 126 LKSYKQLPVTLYQIQDKFRDEMRPRFGLMRGREFIMKDAYSFSSTQESLQECYDAEKGAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RI  R G++++P+ A+SG IGGD S EF+ LAD GE  +            +       
Sbjct: 186 ARICERTGIRALPVIADSGQIGGDTSVEFMALADAGEAALVYCDCGYAADTEAATVKVHV 245

Query: 242 IISLNSIVEQWTAPYAATSD 261
                  +E+   P  +T +
Sbjct: 246 EEGTAGELEKVATPEVSTIE 265



 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 72/193 (37%), Positives = 106/193 (54%), Gaps = 2/193 (1%)

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A  DV   +  D  P   +     RGIEV  +F  GTKYS  + ATF   DG +    MG
Sbjct: 379 AWVDVVTAREGDLCPTCGQPLHEARGIEVSQVFQLGTKYSEALGATFTAEDGTEQPFLMG 438

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R++AAV+E  +D  GIIWP  VAP+++ ++ +   D       +++     + 
Sbjct: 439 CYGIGVSRLLAAVVEQHNDEHGIIWPVCVAPYEVEIVPLSVGDDTVWPVAKQLADSFVEA 498

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +   DD  E+ G +FA ADL+G P QVIVG + V++   E+K+R TG R D++L+EV 
Sbjct: 499 GLETVVDDRDERPGVKFADADLIGLPWQVIVGKRGVANGVAEVKNRETGERVDVALDEVA 558

Query: 436 NYASHRFSNNRPV 448
            +   R +  R +
Sbjct: 559 AWLVSRIAPLRQL 571


>gi|21109942|gb|AAM38410.1| prolyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 583

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 115/223 (51%), Positives = 152/223 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 20  MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 79

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 80  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 139

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 140 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 199

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  
Sbjct: 200 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAF 242



 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 1/193 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +       P       +  +   +    +   ARGIEVGH+F  G++Y+  + AT     
Sbjct: 389 NWGRDLPEPETVADVRNVVEGERAADGGELRLARGIEVGHVFQLGSQYAQALQATVIDEG 448

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDAC 365
           GK   ++MG YGIG  R+VAA IE +HD  GIIWP  +AP+++ +  I    D     A 
Sbjct: 449 GKAAVMKMGCYGIGISRIVAAAIEQNHDDAGIIWPAPMAPWQVVVCVINPKQDPQVLAAA 508

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +  +L   G D   DD G + G+ FA  +LLG P +V+V  + ++    E + R    
Sbjct: 509 QALLDQLLAAGLDAALDDRGLRPGAMFADMELLGIPHRVVVSERGLAAGTFEYRARTADA 568

Query: 426 REDMSLEEVINYA 438
            E +    + +  
Sbjct: 569 AESLDKAGLFSRL 581


>gi|330839271|ref|YP_004413851.1| Prolyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
 gi|329747035|gb|AEC00392.1| Prolyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
          Length = 568

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 117/276 (42%), Positives = 169/276 (61%), Gaps = 4/276 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+E P DAEI SH+LMLR GMI + + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MLTSKLYAPTLREVPSDAEITSHRLMLRAGMIRKAAGGVYTYLPLAWRTIKKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A++W ESGR+  +G+EM RL D + +    GPTHEE++T + R 
Sbjct: 61  MDAAGGQELCMPIMQPAEIWQESGRWSVFGQEMFRLKDCHGREFCLGPTHEEMITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE+RPRFG+MRSREF+MKD YSFD    G+  SY KM+ +
Sbjct: 121 EVRSYKQLPLLLYQIQNKYRDEIRPRFGLMRSREFIMKDLYSFDKDEAGADISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y  +F R GLK  P+ A++G IGG+ +HEF VLA  GE+++ C     D+    E  +  
Sbjct: 181 YTNVFTRCGLKFRPVEADAGAIGGNHTHEFTVLAAAGESEIACCTAC-DYAANVEKAELL 239

Query: 240 --DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
             D        +++   P   T ++  + L   L  
Sbjct: 240 PIDASEEEAQPLKKVETPACKTIELVADFLRVPLER 275



 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 64/188 (34%), Positives = 99/188 (52%), Gaps = 2/188 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T+D+      D  P         RGIE G +F  GTKYS  + ATF   +GK+  + MG 
Sbjct: 380 TADIRLMAAGDPCPHCGAPVEITRGIEAGQVFKLGTKYSEALGATFLDENGKEKALFMGC 439

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +AA IE  +D  GIIWP ++AP+++ ++ + A         E++Y  L   G
Sbjct: 440 YGIGVGRTMAAAIEQHNDEHGIIWPRAIAPYEVVVVPVNAKASEQLALAEEVYEMLLAAG 499

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            D   DD  ++ G +F  ADL+G+PL++ +G K + + K+E+K R +G   D +  E + 
Sbjct: 500 VDAILDDRKDRAGVKFKDADLIGYPLRITIGPKALEEGKIELKVRRSGESCDCTKAECLA 559

Query: 437 YASHRFSN 444
                  +
Sbjct: 560 KVQELLKD 567


>gi|241204765|ref|YP_002975861.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858655|gb|ACS56322.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 661

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 70/441 (15%), Positives = 142/441 (32%), Gaps = 41/441 (9%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      ++ L      +   G+  W   G +    + A +R       
Sbjct: 234 YLHMLAEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHGKGWRVFQTLVAYMRRRL-AGD 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG +  Y   M ++        +D+     P +      IF+ 
Sbjct: 291 YQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIFKH 350

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR LP    +     R E      G+MR R F   DA+ F    + +         
Sbjct: 351 GLKSYRELPIRLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKIN-D 409

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L ++   G   + ++  + P     S +    A++    V             E    
Sbjct: 410 LILSVYKDFGFDEVTIKLSTRPDKRVGSDDLWDRAESVMMGVL------------ETIQQ 457

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   I+    A Y    +     L D++    +     ++      FG        
Sbjct: 458 QSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG-------- 506

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +  ++ +      +     G+M     ++  +  G   +W   +     ++       
Sbjct: 507 AFYIDSNSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLWVSPLQVVVATIT------ 560

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   L + G +V  D   E+I  +     +   P+ ++ G K   +  V I
Sbjct: 561 SEADAYGLEVAEALREAGLNVETDFRNEKINYKVREHSVTKVPVIIVCGRKEAEERTVNI 620

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           +   +  +  M L+  +   +
Sbjct: 621 RRLGSQDQVSMGLDAAVESLA 641


>gi|160883804|ref|ZP_02064807.1| hypothetical protein BACOVA_01776 [Bacteroides ovatus ATCC 8483]
 gi|237722137|ref|ZP_04552618.1| threonyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|299149166|ref|ZP_07042227.1| threonine--tRNA ligase [Bacteroides sp. 3_1_23]
 gi|156110889|gb|EDO12634.1| hypothetical protein BACOVA_01776 [Bacteroides ovatus ATCC 8483]
 gi|229447947|gb|EEO53738.1| threonyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|298512833|gb|EFI36721.1| threonine--tRNA ligase [Bacteroides sp. 3_1_23]
          Length = 646

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 148/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVLLEEAKKRDHRKIGKEMQLFM-FSETVGKGLPMWLPKGTALRLRLQEFLRRIQTRY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L+V SG Y  YGK+  +        +     P +     +I+++  
Sbjct: 289 DYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEIYKNFP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPEQVKDE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D    + +   D           +   
Sbjct: 408 SIVFRSMDFQNFEAQISLR--------------DKVNREKYIGSDDNWEKAEQAIIEACA 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLPAKIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFEL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G+D + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPEQVVILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  E++   L         DD  E+IG +    ++   P  +IVG K   + +V ++
Sbjct: 557 KFNEYAEQVKMYLKIHEIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M  EE     +    N
Sbjct: 617 RQGEGDKGTMKFEEFAKILNEEVQN 641


>gi|77748729|ref|NP_643874.2| prolyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306]
 gi|114152277|sp|Q8PGP9|SYP_XANAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 564

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 115/223 (51%), Positives = 152/223 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  
Sbjct: 181 YTRIFTRLGLDFRAVQADSGAIGGDASQEFHVIADSGEDSLAF 223



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 1/193 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +       P       +  +   +    +   ARGIEVGH+F  G++Y+  + AT     
Sbjct: 370 NWGRDLPEPETVADVRNVVEGERAADGGELRLARGIEVGHVFQLGSQYAQALQATVIDEG 429

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDAC 365
           GK   ++MG YGIG  R+VAA IE +HD  GIIWP  +AP+++ +  I    D     A 
Sbjct: 430 GKAAVMKMGCYGIGISRIVAAAIEQNHDDAGIIWPAPMAPWQVVVCVINPKQDPQVLAAA 489

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +  +L   G D   DD G + G+ FA  +LLG P +V+V  + ++    E + R    
Sbjct: 490 QALLDQLLAAGLDAALDDRGLRPGAMFADMELLGIPHRVVVSERGLAAGTFEYRARTADA 549

Query: 426 REDMSLEEVINYA 438
            E +    + +  
Sbjct: 550 AESLDKAGLFSRL 562


>gi|290968110|ref|ZP_06559655.1| proline--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781785|gb|EFD94368.1| proline--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 575

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 117/263 (44%), Positives = 171/263 (65%), Gaps = 2/263 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+++P +AE+ASHK ML+ GMI +++ G YS+LPL ++++  +  IIREE
Sbjct: 1   MLASKLYCPTLRDDPAEAEVASHKYMLKAGMIRKNASGFYSFLPLARRSVLKIEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++TGA E+ +P +Q A++W ESGR+D YGKEM +LADR+       PTHEE++T + R+
Sbjct: 61  MDKTGAQEIMMPIVQPAEIWQESGRWDVYGKEMFKLADRHGNEYCLAPTHEELITTLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE+RPRFG+MRSREF+M+D+YSFD   EG + SY  M+ +
Sbjct: 121 ELRSYKQLPVNLYQIQNKYRDEIRPRFGLMRSREFVMQDSYSFDTDQEGLEKSYQAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--D 238
           Y RIF R GL+   + A+SG IGG  SHEF+ LA +GE  +             + T   
Sbjct: 181 YSRIFTRCGLQYRTVLADSGQIGGKHSHEFMALAASGEADIVTCTQCAYAADVEQATPNP 240

Query: 239 FDDIISLNSIVEQWTAPYAATSD 261
                     +E++  P+ AT +
Sbjct: 241 LPAAAEPLQAIEKFATPHCATIE 263



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/180 (37%), Positives = 98/180 (54%), Gaps = 2/180 (1%)

Query: 269 DSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  PE        RGIEVG +F  GTKYS  + A+F   DGK     MG YGIG  R +A
Sbjct: 392 DGCPECGAPVQLTRGIEVGQVFQLGTKYSEALQASFLDKDGKAKPFVMGCYGIGVTRTMA 451

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A IE  HD +GI+WP ++AP++  ++ +   D+V   A  ++Y +LS    ++  DD  E
Sbjct: 452 AAIEQYHDERGILWPVAIAPYEAVILPLNMKDEVMVTAARELYTQLSADSSEIVLDDRPE 511

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + G +F  ADL+G+P+Q++VG    +   VEIK R TG +E + +   +          R
Sbjct: 512 RAGVKFNDADLIGYPVQIVVGKDTKTKGTVEIKVRRTGAKEAVPVRTAVGRVQAILRELR 571


>gi|260170790|ref|ZP_05757202.1| threonyl-tRNA synthetase [Bacteroides sp. D2]
 gi|315919124|ref|ZP_07915364.1| threonyl-tRNA synthetase [Bacteroides sp. D2]
 gi|313692999|gb|EFS29834.1| threonyl-tRNA synthetase [Bacteroides sp. D2]
          Length = 646

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 148/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVLLEEAKKRDHRKIGKEMQLFM-FSETVGKGLPMWLPKGTALRLRLQEFLRRIQTRY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L+V SG Y  YGK+  +        +     P +     +I+++  
Sbjct: 289 DYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEIYKNFP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPEQVKDE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D    + +   D           +   
Sbjct: 408 SIVFRSMDFQNFEAQISLR--------------DKVNREKYIGSDDNWEKAEQAIIEACA 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLPAKIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFEL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G+D + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPEQVVILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  E++   L         DD  E+IG +    ++   P  +IVG K   + +V ++
Sbjct: 557 KFNEYAEQVKMYLKIHEIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M  EE     +    N
Sbjct: 617 RQGEGDKGTMKFEEFAKILNEEVQN 641


>gi|326201675|ref|ZP_08191546.1| threonyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325988275|gb|EGD49100.1| threonyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 645

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 160/444 (36%), Gaps = 33/444 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L T  + +  +G+   +P G + +  +   + +E+ R 
Sbjct: 230 EYVTKLEEAKKRDHNKLGRELELFTT-VEEIGQGLPLLMPKGARIVQTLQRFVEDEEERR 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA--MIYGPTHEEVMTDIFRSHI 122
           G +    P +  +DL+  SG +  Y   M  L D       M   P        I+ + +
Sbjct: 289 GYVLTKTPFMAKSDLYKLSGHWQHYKDGMFLLGDEEKDEEVMALRPMTCPFQFMIYNTKL 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  + +    FR+E      G++R R+F + + +    TPE  +  +  +    
Sbjct: 349 HSYRDLPIRYGETSTLFRNEASGEMHGLIRVRQFTISEGH-LVCTPEQLEDEFKGVVDLI 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +   LG            I  D+++ F       + +   +++  +       T  D 
Sbjct: 408 KFMMETLG------------IEEDVTYRFSKWDPKNKEKYIGNEEDWENVQGQMRTILDH 455

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+  + +     +   +    ++    F    + S+     
Sbjct: 456 LKLDYKEAEGEAAFYGPKLDIQCKNVH---GKEDTIITVQVD----FALAERLSMVY--- 505

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               + K H   +    IG      A++    +     +P  + P +  ++ +       
Sbjct: 506 VDKNNEKKHPYIIHRTSIGCYERTLAMLI---EKYAGAFPTWLCPVQAKILPLVDKHH-- 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +K+   L   G  V  D   E+IG +   A +   P  +++G K +  + V ++ R
Sbjct: 561 -DFAQKVAQMLRDKGVKVEVDTRNEKIGYKIREAQMEKIPYMLVIGDKEMESNAVSVRSR 619

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    MS E+ ++         
Sbjct: 620 KEGDLGAMSAEQFVDKIVEEIRTR 643


>gi|257462679|ref|ZP_05627088.1| prolyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 593

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEI SH+L+LR GMI + + G+Y++LPLG + L  V  IIREE
Sbjct: 25  MRFSKAYIKTLKETPKEAEIISHQLLLRAGMIKKLASGLYTYLPLGFRTLKKVENIIREE 84

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +P LQ A+LW ESGR++  G+EM+RL DR+ +  + GPT+EEV+TDI R+
Sbjct: 85  MDRAGSQELLMPVLQPAELWRESGRWNVMGEEMVRLKDRHQRDFVLGPTNEEVITDIVRN 144

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ K RDE RPRFG+MRSREF+MKDAYSF  + E     +  M  +
Sbjct: 145 DISSYKSLPINLYHIQTKVRDERRPRFGLMRSREFIMKDAYSFHTSQESLDEEFENMKNT 204

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S       
Sbjct: 205 YTRIFERCGLKFRPVEADSGAIGGSGSQEFHVLAESGEDEIIYSDGCSYAA 255



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 70/183 (38%), Positives = 101/183 (55%), Gaps = 3/183 (1%)

Query: 261 DVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   K  +  P+   K  SARGIE GHIF  G KYS  + A++    G+   + MG YG
Sbjct: 408 DIRLVKAGEDCPKSNGKLHSARGIECGHIFKLGDKYSKALGASYLDEKGESKIMLMGCYG 467

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R +AA IE ++D  GIIWP ++AP+ + +I     +       E+IY  L+K   D
Sbjct: 468 IGVGRTMAAAIEQNYDENGIIWPTALAPYLVDVIPANIKNTEQMKLAEEIYENLNKEHLD 527

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              DD  E+ G +F  ADL+GFP ++I G K  +++ VE+K R TG   ++S +EVI   
Sbjct: 528 AMIDDRDERPGFKFKDADLIGFPFKIICGKK-AAENIVELKIRKTGETLEVSADEVIPTI 586

Query: 439 SHR 441
              
Sbjct: 587 KEL 589


>gi|262065930|ref|ZP_06025542.1| proline--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
 gi|291380410|gb|EFE87928.1| proline--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
          Length = 567

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 125/276 (45%), Positives = 167/276 (60%), Gaps = 4/276 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR  MI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAAMIKKLASGIYAYLPLGYRTIRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGAEMLRLQDRHERDFVLSPTQEEMITSIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKD YSF  + E     +  M  +
Sbjct: 121 DISSYKSLPLNLYHIQTKFRDERRPRFGLMRGREFTMKDGYSFHTSQESLDEEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S    D+    E    +
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD-GSDYAANIEKAVSE 239

Query: 241 DIISLN---SIVEQWTAPYAATSDVHNEKLFDSLPE 273
            I         VE    P   T +   + L   L  
Sbjct: 240 LINPPKEDLREVELVHTPDCPTIESLAKYLDIPLER 275



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/184 (39%), Positives = 101/184 (54%), Gaps = 2/184 (1%)

Query: 261 DVHNEKLFDSLP-ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           D+   ++ D+     K  SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG YGI
Sbjct: 383 DIRKVRVGDNCITGGKLHSARGIECGQIFKLGDKYSKAMNATYLDENGKTQYMLMGCYGI 442

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R +AA IE ++D  GIIWP S+AP+ + +I     ++      EKIY  L     DV
Sbjct: 443 GVTRTMAAAIEQNNDENGIIWPVSIAPYIVDVIPANIKNEGQVSLAEKIYNELQAENIDV 502

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E+ G +F  ADL+GFP +V+VG +   +  VE+K R TG   +++  EV+    
Sbjct: 503 MLDDRDEKPGFKFKDADLIGFPFKVVVGKR-ADEGIVEVKIRRTGETLELAQAEVVAKIK 561

Query: 440 HRFS 443
               
Sbjct: 562 ELMK 565


>gi|126740677|ref|ZP_01756363.1| threonyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
 gi|126718192|gb|EBA14908.1| threonyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
          Length = 649

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 146/445 (32%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W P G K    +   +R  Q R
Sbjct: 234 KAHLHMLEEAAKRDHRKLGREMNLY--HMQEEAPGQVFWHPNGWKIYTTLQDYMRRMQER 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-----GPTHEEVMTDIF 118
            G +E++ P +    LW  SG +D Y + M  +    D A         P +      +F
Sbjct: 292 DGYVEVNTPQVVDRKLWEASGHWDKYQENMFIVEVDEDHAREKAINALKPMNCPCHVQVF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D + F  + +  +    K 
Sbjct: 352 NQGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDGHIFC-SEDQIESETAKF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                +++  LG  +  ++  + P     S E                   D    +   
Sbjct: 411 IAFLSKVYADLGFHNWTIKLSTRPEKRIGSDE-----------------SWDLVEKALGD 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     ++E   A Y    +     L D++  N +     ++              
Sbjct: 454 ACKAAGYEYEVLEGEGAFYGPKLEF---TLTDAIGRNWQCGTLQVDPNLP--------ER 502

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A F G DG  H    +    +G+      ++   H GK   W         S+     
Sbjct: 503 LEANFIGQDGNKHRPFMLHRACLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIT---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++   L   G     D   E+I  +     +   P+ + VG + V +  V
Sbjct: 559 --SDADDYVNEVVETLRAAGVRAEADIRNEKINYKVREHSVGKVPVILAVGHREVEERTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++       +   L+E +   +  
Sbjct: 617 SVRRLGEKQTKVEGLDETVAKLTQE 641


>gi|114152274|sp|Q3SH24|SYP_THIDA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 576

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 122/233 (52%), Positives = 165/233 (70%), Gaps = 1/233 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++FL   +E P +AE+ SHKLMLR G+I +   G+Y+W+PLG + L  V A++REE
Sbjct: 1   MRTTQFFLSTTKEAPSEAELVSHKLMLRAGLIKRLGSGLYTWMPLGLRVLRRVEAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW E+GR+  +G +ML++ DR+++   +GPTHEEV+TD+ R 
Sbjct: 61  MNRAGAIELLMPAVQPAELWQETGRWAQFGPQMLKIKDRHEREFCFGPTHEEVITDLARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF  + E    +Y  M+ +
Sbjct: 121 EIKSYRQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHASRESLAATYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y RIF RLGL+   + A++G IGG  SHEF VLAD+GE  +    D  D+   
Sbjct: 181 YGRIFTRLGLRFRAVAADTGAIGGSASHEFHVLADSGEDLIAYCPD-SDYAAN 232



 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/188 (36%), Positives = 104/188 (55%), Gaps = 8/188 (4%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGH+F  G KYS  M+AT+    GK   ++MG 
Sbjct: 383 VADIRNVVAGDPSPDGKGTLALCRGIEVGHVFQLGNKYSQAMNATYLDEAGKAQAMEMGC 442

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+VAA +E +HDGKGI+WP S+APF + ++ I        ++A + +YA L  V
Sbjct: 443 YGIGVSRIVAAAVEQNHDGKGIVWPASMAPFSVVIVAIGYGKSASVKNAADTLYADLMAV 502

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIREDMS 430
           G +V  DD  E+ G  FA A+L+G P +V +G + +++  VE + R            ++
Sbjct: 503 GVEVLLDDRDERPGVMFADAELVGIPHRVTLGERGLNEGVVEYQPRRAAPEQGADARKIA 562

Query: 431 LEEVINYA 438
           + E   + 
Sbjct: 563 VAEAKAFL 570


>gi|74318130|ref|YP_315870.1| prolyl-tRNA synthetase [Thiobacillus denitrificans ATCC 25259]
 gi|74057625|gb|AAZ98065.1| prolyl-tRNA synthetase [Thiobacillus denitrificans ATCC 25259]
          Length = 579

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 122/233 (52%), Positives = 165/233 (70%), Gaps = 1/233 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++FL   +E P +AE+ SHKLMLR G+I +   G+Y+W+PLG + L  V A++REE
Sbjct: 4   MRTTQFFLSTTKEAPSEAELVSHKLMLRAGLIKRLGSGLYTWMPLGLRVLRRVEAVVREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW E+GR+  +G +ML++ DR+++   +GPTHEEV+TD+ R 
Sbjct: 64  MNRAGAIELLMPAVQPAELWQETGRWAQFGPQMLKIKDRHEREFCFGPTHEEVITDLARR 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF  + E    +Y  M+ +
Sbjct: 124 EIKSYRQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHASRESLAATYQAMYDA 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y RIF RLGL+   + A++G IGG  SHEF VLAD+GE  +    D  D+   
Sbjct: 184 YGRIFTRLGLRFRAVAADTGAIGGSASHEFHVLADSGEDLIAYCPD-SDYAAN 235



 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/188 (36%), Positives = 104/188 (55%), Gaps = 8/188 (4%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K      RGIEVGH+F  G KYS  M+AT+    GK   ++MG 
Sbjct: 386 VADIRNVVAGDPSPDGKGTLALCRGIEVGHVFQLGNKYSQAMNATYLDEAGKAQAMEMGC 445

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+VAA +E +HDGKGI+WP S+APF + ++ I        ++A + +YA L  V
Sbjct: 446 YGIGVSRIVAAAVEQNHDGKGIVWPASMAPFSVVIVAIGYGKSASVKNAADTLYADLMAV 505

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIREDMS 430
           G +V  DD  E+ G  FA A+L+G P +V +G + +++  VE + R            ++
Sbjct: 506 GVEVLLDDRDERPGVMFADAELVGIPHRVTLGERGLNEGVVEYQPRRAAPEQGADARKIA 565

Query: 431 LEEVINYA 438
           + E   + 
Sbjct: 566 VAEAKAFL 573


>gi|165932872|ref|YP_001649661.1| threonyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
 gi|165907959|gb|ABY72255.1| threonyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
          Length = 644

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 154/438 (35%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L      + ++G+  W   G    + +   IR++  + G
Sbjct: 240 YLLMLEEAEKRDHRKLGRELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKNG 297

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG ++ +  +M    + +DK +   P +      IF+  IKSY
Sbjct: 298 YTEVKTPVLVDKSLWEASGHWEKFRDDMF-ALETDDKTLALKPMNCPCHVQIFKQGIKSY 356

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    + +  + +        +
Sbjct: 357 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCAAEQITDETVSF-CKLLTEV 415

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S+E                   D    +     +    
Sbjct: 416 YKDFGFTDIKVKFSDRPEIRAGSNE-----------------VWDKAENALKEAVEQAGF 458

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             ++     A Y    +     L D++    +     ++    F    +    + A++  
Sbjct: 459 TYTLNPGEGAFYGPKLEF---VLTDAIGRQWQCGTLQMD----FVLPER----LDASYVA 507

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           A G+      +    +G++     ++   + G+  +W           + I        D
Sbjct: 508 ASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW------LAPVQVAIATITSDLND 561

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G    ++   ++I  +         P+  ++G +   + +V I+   T
Sbjct: 562 YALEVQKALIDNGVRTDFNISPDKINYKIREFSNQKIPMIAVIGKQEQENKQVAIRRLGT 621

Query: 424 GIREDMSLEEVINYASHR 441
             +E +S+E++I      
Sbjct: 622 TDQEVLSVEQLIAVVKEE 639


>gi|330836194|ref|YP_004410835.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Spirochaeta
           coccoides DSM 17374]
 gi|329748097|gb|AEC01453.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Spirochaeta
           coccoides DSM 17374]
          Length = 588

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 143/448 (31%), Gaps = 41/448 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L++   RD      +  L +    +   G+  W P G +    +    R+E  +
Sbjct: 178 RLYLQHLEDVEKRDNRRLGKEQDLFSLH-EEAGPGLVYWHPRGARVRVAIENFWRDEHYK 236

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG    Y   M    + +       P +      I+ +  +
Sbjct: 237 NGYEMVFSPHVGRSWLWETSGHLGFYKDSMYPAMEMDKSDYYVKPMNCPFHIMIYNNSKR 296

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++   +R E      G+MR R F   DA+ F  TPE       K+    L
Sbjct: 297 SYRDLPIRMAELGTVYRYEKAGALHGLMRVRGFTQDDAHLFC-TPEQMDDEIRKVLEFSL 355

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G + +     + P       E                   D    +     +  
Sbjct: 356 YMLRSFGFQDVKAYLSTRPEESVGERE-----------------RWDAATKALRNAIEKE 398

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                + E   A Y    D+   K+ D++    ++S    +           S     TF
Sbjct: 399 GLAYEVDEGGGAFYGPKIDL---KVKDAIGREWQLSTVQFDFN--------MSDRFQMTF 447

Query: 303 KGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              DG++    M    +     R    +IE+                           + 
Sbjct: 448 VDKDGQEKRPYMIHRALLGSIERFFGVLIENYAGAFPPWLAPEQIMVVPVG-------EA 500

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                  +  RL K G     D   +++ ++   A L   P Q++VG +  S+ KV +++
Sbjct: 501 FFPYATALRDRLRKEGLRADADLSDDRMNAKIRNAQLHKIPYQLVVGEREQSEDKVSVRY 560

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPV 448
           R      D+   + I       +    V
Sbjct: 561 RNGNKANDVPTADFIAEVKAAVAAREQV 588


>gi|326533164|dbj|BAJ93554.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 150/446 (33%), Gaps = 38/446 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  +Y   I +   RD  +      L     H  S G   +LP G    + +   +R+E 
Sbjct: 303 RLKEYLHMIEEAKKRDHRLLGQSQELF--FFHPLSPGSCFFLPNGAIIYNKLMDFLRKEY 360

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + +  LW  SG   +Y   M  + +   +     P +      +F   
Sbjct: 361 RERGYREVLSPNIYNMQLWETSGHAANYKDNMF-VFEIEKQEFGLKPMNCPGHCLMFGHK 419

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP       +  R+EL     G+ R R F   DA+ F  T    K         
Sbjct: 420 VRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC-TESQIKDEVGACLEF 478

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G +   +   + P       E                   +          +
Sbjct: 479 IDYVYKIFGFQY-ELELSTRPEKYLGDIE-----------------TWNKAEQQLTEALN 520

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +      I E   A Y    D+    +FD+L    + +   ++    F    ++ L  SA
Sbjct: 521 EFGKPWKINEADGAFYGPKIDIG---VFDALKRKFQCATLQLD----FQLPLRFKLTYSA 573

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                   +  V +    +G++  + A++   ++GK  +W          +         
Sbjct: 574 E--DEAKLERPVMIHRAILGSVERMFAILLEHYNGKWPLWLSPRQAIVCCV------SSN 625

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++++A++   G  V  D     I  +   A L  F   ++VG+K     KV ++ 
Sbjct: 626 SLAYAKEVHAQIHAAGFHVDIDMTDRTIQKKVREAQLAQFNYILVVGAKEAESGKVVLRV 685

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R        S+ +VI   S   ++ +
Sbjct: 686 RDKADLSTESIADVIARFSDEVASFK 711


>gi|317121664|ref|YP_004101667.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591644|gb|ADU50940.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Thermaerobacter
           marianensis DSM 12885]
          Length = 644

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 148/436 (33%), Gaps = 41/436 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L      + + G   W P G      +    RE Q R G  E+  P
Sbjct: 244 AKRRDHRKLGPELDLF--HFEEIAPGYAFWHPKGATVYGLLERFSRELQARYGYQEVRTP 301

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            +   DLW  SG ++ Y + M  L +R        P +      I+RS I+SYR+LP   
Sbjct: 302 EILKVDLWHRSGHWEHYRENMF-LIEREGAQFGVKPMNCPGHCLIYRSRIRSYRDLPLRL 360

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +     R E      G++R R F   DA+   +  +  +    ++      I+    ++
Sbjct: 361 AEYGRLARFERSGTLHGLLRVRGFEQDDAH-LFVREDQIEEEIGRVLELVDAIYGTFDMR 419

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                A                  T   +        +    +     +      S+   
Sbjct: 420 YEIKLA------------------TRPDKFMGEPALWERAEAALARALEAAGRQYSLAPG 461

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    D +   + DSL    + +   ++    F    ++      T+  A G++  
Sbjct: 462 DGAFYGPKLDFY---VIDSLGRKWQTATVQLD----FQMPIRFD----LTYVDASGQEQR 510

Query: 312 V-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              +    +G++     ++    +     +P  +AP ++ ++ +        D   ++  
Sbjct: 511 PVMIHRAIMGSLERFIGILI---EHYAGAFPVWLAPVQVRVLPVSDRHH---DYARRVEE 564

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           RL   G  V  D   E++G +   A +   P  ++VG +   +  V ++ R  G      
Sbjct: 565 RLRAEGLRVEVDARDEKLGYKIRQAQVEKVPYMLVVGDREAQEGTVAVRSRDRGDLGSQP 624

Query: 431 LEEVINYASHRFSNNR 446
           LE      +   +  R
Sbjct: 625 LEAFARQVAAAVAERR 640


>gi|310821380|ref|YP_003953738.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309394452|gb|ADO71911.1| Threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 642

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 131/441 (29%), Gaps = 42/441 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L     H  + G   W P G      ++  +R     T
Sbjct: 236 EYLTRIEESKKRDHRKLGKELDLF--HFHPFAPGSAFWSPKGTTLYQTLSQWMRRLTAET 293

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN--DKAMIYGPTHEEVMTDIFRSHI 122
           G +E+  P + +  LW  SG +  Y + M  + D    +      P +       F    
Sbjct: 294 GYVEIKTPLMFNKGLWEASGHWGKYKENMFLVLDNESGEHDFSLKPMNCPSHHLYFGFKR 353

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP   +   +  R+E      G+ R R+F   DA+ +    +       + FV  
Sbjct: 354 HSYRDLPLRLHTQDVLHRNEAAGSLGGLTRVRQFAQDDAHIYCTEDQIGDE--VRRFVKL 411

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L   +         +  + P                           D    +       
Sbjct: 412 LDHVYNAVGLKYSAKFSTRPEQR-----------------LGEDALWDRAESALEGVLKT 454

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     +     A Y    D     + DS+        R  ++G I       +      
Sbjct: 455 LGVPYEVKPGEGAFYGPKIDFD---VSDSIG-------RKWQLGTI-QLDYLAAQRFDLK 503

Query: 302 FKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G D  +H   +      G+     A++     G    W             +      
Sbjct: 504 YIGEDNAEHRPVVLHRAIYGSFERFIAILIEHFAGAFPAW------LAPIQAVLVTVADR 557

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   K+  +L   G  V  DD G+ + ++     +   P  +++G   V    V  + 
Sbjct: 558 QLDYARKVRDQLRAKGFRVELDDRGQSLNAKIREWQIQKLPFTLVIGDNEVEAGGVAPRR 617

Query: 421 RLTGIREDMSLEEVINYASHR 441
                 + M LE+     S  
Sbjct: 618 YGGEDLKSMKLEDFEALLSKE 638


>gi|298346881|ref|YP_003719568.1| threonyl-tRNA synthetase [Mobiluncus curtisii ATCC 43063]
 gi|298236942|gb|ADI68074.1| threonyl-tRNA synthetase [Mobiluncus curtisii ATCC 43063]
          Length = 669

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 64/457 (14%), Positives = 135/457 (29%), Gaps = 47/457 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD     ++L L +    +   G+  + P G      +    R    
Sbjct: 245 LKEYVTRMEEAAKRDHRRLGNELDLFS-FPEEIGSGLAVFHPKGAMVRMEMENYSRRRHL 303

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTH 110
             G   +  P +    L+  SG  + Y   M                 +        P +
Sbjct: 304 EEGYSFVYTPHVTKGQLFETSGHLEWYKDGMFPPMRVDEECDDQGNVTKEGFDYYLKPMN 363

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
             +   I++S  +SYR LP   ++    +R E      G+ R R F   D++ +    + 
Sbjct: 364 CPMHNLIYKSRSRSYRELPLRLFEFGTVYRYEKSGVVHGLTRGRGFTQDDSHIYCTREQM 423

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                  +    L +    GL    +   +                    +   S +  +
Sbjct: 424 KDELTK-LLTFVLDLLKDYGLDDFYLELST----------------KNPHKFVGSDEIWE 466

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
               +                +  A Y       + +  D++    ++S   ++    F 
Sbjct: 467 EATNTLAEVATASGLELVPDPEGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FN 519

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
              ++ L  +A       +   V +     G++     V+   + G    W         
Sbjct: 520 LPERFDLEYTAA---DGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW------LAP 570

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
             + +    +   D CE I  RL      V  D   ++ G +   A     P  +I G +
Sbjct: 571 VQVRLVPVAEAFNDYCEDIANRLRAENVRVEVDTTDDRFGKKIRNAAKDKIPFTLIAGGE 630

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
               + V  ++R    +  + +++ I        + R
Sbjct: 631 DAEANAVSFRYRGGEQKNGVPIDQAIAEILEVIRSRR 667


>gi|81429010|ref|YP_396010.1| threonyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
 gi|123742216|sp|Q38VT0|SYT_LACSS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78610652|emb|CAI55703.1| Threonyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
          Length = 656

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 156/440 (35%), Gaps = 34/440 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD  +  ++L L    +  +   G+  WLP G     ++   I +++   G  
Sbjct: 235 RRQEAKERDHRVIGNQLDLF--FVDPKVGAGLPYWLPNGATIRRSIERYIIDKEVANGYE 292

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + DL+ +SG +D Y ++M    D  D  M    P +      +++ H +SYR
Sbjct: 293 HVYTPILANLDLYKQSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHPRSYR 352

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++ +  R E       ++    +  +     + P+  +  +  +    + ++ 
Sbjct: 353 ELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIQDEFKSILGLMIDVYA 412

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISL 245
              +     R                  D   T+ +   D M     +      DD+   
Sbjct: 413 DFNINDYTFRLS--------------YRDPANTEKYFDDDEMWNKAQAMLKGAMDDLGLD 458

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV  +    ++   + +S   ++    F    ++ L     + G 
Sbjct: 459 YVEAEGEAAFYGPKLDVQTKT---AMGNEETLSTIQLD----FMLPERFDLH----YVGE 507

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DG+ H   M     G +  +        +     +P  +AP +  +I +   + +  D  
Sbjct: 508 DGEMHRPVMIHR--GLVSTMERFTAYLTEIYKGAFPTWLAPTQAVIIPV--KNDLHYDYA 563

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + I   + K G  V  DD  E++G +   A     P  ++VG + ++ + V ++      
Sbjct: 564 KNIKDEMIKRGLRVRIDDRNEKMGYKIREAQTSKIPYTLVVGDQELAQATVSVRKYGEEN 623

Query: 426 REDMSLEEVINYASHRFSNN 445
             + + +  IN       N 
Sbjct: 624 AVEEASDMFINAIVAEVGNY 643


>gi|293372832|ref|ZP_06619210.1| threonine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|298480838|ref|ZP_06999033.1| threonine--tRNA ligase [Bacteroides sp. D22]
 gi|292632207|gb|EFF50807.1| threonine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|295085227|emb|CBK66750.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Bacteroides
           xylanisolvens XB1A]
 gi|298272861|gb|EFI14427.1| threonine--tRNA ligase [Bacteroides sp. D22]
          Length = 646

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 148/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVLLEEAKKRDHRKIGKEMQLFM-FSETVGKGLPMWLPKGTALRLRLQEFLRRIQTRY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L+V SG Y  YGK+  +        +     P +     +I+++  
Sbjct: 289 DYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEIYKNFP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPEQVKDE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D    + +   D           +   
Sbjct: 408 SIVFRSMDFQNFEAQISLR--------------DKVNREKYIGSDDNWEKAEQAIIEACA 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLPAKIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFEL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G+D + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPEQVVILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  E++   L         DD  E+IG +    ++   P  +IVG K   + +V ++
Sbjct: 557 KFNEYAEQVKMYLKIHEIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M  EE     +    N
Sbjct: 617 RQGEGDKGTMKFEEFAKILNEEVQN 641


>gi|229513024|ref|ZP_04402490.1| prolyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|229349917|gb|EEO14871.1| prolyl-tRNA synthetase [Vibrio cholerae TMA 21]
          Length = 600

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 115/237 (48%), Positives = 154/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/189 (35%), Positives = 109/189 (57%), Gaps = 3/189 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D         +  RGIEVGHIF  GT YS  M+     ++GK+  ++M
Sbjct: 382 GKVEDLRNVVEGDPSPCGNGTLMLKRGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +     +  + A EK+YA L+
Sbjct: 442 GCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E K+R +G +E +++  
Sbjct: 502 AAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFEYKNRRSGEKEAVAMAS 561

Query: 434 VINYASHRF 442
           +I++   + 
Sbjct: 562 IIDFIQAKL 570


>gi|301167107|emb|CBW26686.1| threonyl-tRNA synthetase [Bacteriovorax marinus SJ]
          Length = 584

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 143/444 (32%), Gaps = 42/444 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K  L  L+E   RD       L L     +  +     ++P G    + +   +RE 
Sbjct: 167 KQLKAHLNFLEEAKKRDHRKLGKDLELF--HFNSVAPASPFFMPKGAFVYNRLIEFMREI 224

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+  P +  +DLW  SG Y+ Y + M   +  +++     P +      +F+ 
Sbjct: 225 YRKYDYQEVITPQILDSDLWHTSGHYEHYKENM-YFSRIDEREYAVKPMNCPCHMLMFKH 283

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           +  SYR+LP  +       R E      G+ R R F   DA+ F            K+  
Sbjct: 284 YKYSYRDLPMRYADFGRLHRYEKAGAVTGLTRVRTFCQDDAHIFIDMDGIQDE-ITKLME 342

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +   +   G   I +   + P                           D    +     
Sbjct: 343 MFFICYEHFGFTGIKVNLSTRPEKKS-----------------GDDATWDKAENALEEAL 385

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   I E   A Y    DV   ++ D+L    ++    ++    F    ++     
Sbjct: 386 KKSGHEYFIKEGDGAFYGPKIDV---EIADALGRYYQLGTIQLD----FQLPERF----G 434

Query: 300 ATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            ++  A G D    +    +     R     +E              A           +
Sbjct: 435 LSYTNAQGNDERPVVIHRALLGSLERFFGVYLEHVAGVFPFWLAPEQAVIVPV------N 488

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           ++   D   K+ + L  +G  V  DD  E +G +         P  +++G + + ++ V 
Sbjct: 489 NEFHLDFANKLQSELFAMGLRVKVDDRNESMGYKTRQIQKSKAPFMIVIGDREMENNSVS 548

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++       E +++EE+    S  
Sbjct: 549 LRKHGEKKTESLTIEELKKLFSEL 572


>gi|315656661|ref|ZP_07909548.1| threonine--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315492616|gb|EFU82220.1| threonine--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 669

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 64/457 (14%), Positives = 135/457 (29%), Gaps = 47/457 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD     ++L L +    +   G+  + P G      +    R    
Sbjct: 245 LKEYVTRMEEAAKRDHRRLGNELDLFS-FPEEIGSGLAVFHPKGAMVRMEMENYSRRRHL 303

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTH 110
             G   +  P +    L+  SG  + Y   M                 +        P +
Sbjct: 304 EEGYSFVYTPHVTKGQLFETSGHLEWYKDGMFPPMRVDEECDDQGNVTKEGFDYYLKPMN 363

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
             +   I++S  +SYR LP   ++    +R E      G+ R R F   D++ +    + 
Sbjct: 364 CPMHNLIYKSRSRSYRELPLRLFEFGTVYRYEKSGVVHGLTRGRGFTQDDSHIYCTREQM 423

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                  +    L +    GL    +   +                    +   S +  +
Sbjct: 424 KDELTK-LLTFVLDLLKDYGLDDFYLELST----------------KNPHKFVGSDEIWE 466

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
               +                +  A Y       + +  D++    ++S   ++    F 
Sbjct: 467 EATNTLAEVATASGLELVPDPEGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FN 519

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
              ++ L  +A       +   V +     G++     V+   + G    W         
Sbjct: 520 LPERFDLEYTAA---DGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW------LAP 570

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
             + +    +   D CE I  RL      V  D   ++ G +   A     P  +I G +
Sbjct: 571 VQVRLVPVAEAFNDYCEDIANRLRAENVRVEVDTTDDRFGKKIRNAAKDKIPFTLIAGGE 630

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
               + V  ++R    +  + +++ I        + R
Sbjct: 631 DAEANAVSFRYRGGEQKNGVPIDQAIAEILEVIRSRR 667


>gi|227485697|ref|ZP_03916013.1| threonine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236252|gb|EEI86267.1| threonine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
          Length = 640

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 143/442 (32%), Gaps = 42/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  + +E   RD      ++ L     H+   G   + P G   ++ +    R+  + +G
Sbjct: 232 YEELQKEIARRDHRKIGKEMDLFA--FHEEGPGFPFFHPNGMILMNELLGWWRDVLDHSG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + DLW  SG +D Y + M      +D+     P +       + S   SY
Sbjct: 290 YGEIKTPLILNEDLWHRSGHWDHYKENM-YFTKIDDEDYAIKPMNCPGSVLTYASRQHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R EL     G+ R R F   DA+ + L  +  +  Y         +
Sbjct: 349 RDLPIRLAEFGQVHRHELSGTLHGLFRVRTFTQDDAHVYCLPSQIKEEVYKM-IDLADLL 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K       + P                           DF         ++   
Sbjct: 408 YSTFGFKYTM-ELSTRP-----------------DDYMGDIKDWDFAEEQLKLALEERGI 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D H   L D+     +     ++    F             +  
Sbjct: 450 DYQINPGDGAFYGPKIDFH---LLDAAKREWQCGTIQLD----FQLPA----NFELEYID 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G+      +    +G++     V+     G+  +W           + +        D
Sbjct: 499 ENGEKKRPVMLHRALLGSVERFIGVLTEHFAGRFPLW------INPRQVEVIPVADRFAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I   + K G  V  D+  E +G +   A ++     ++VG K +    + +++R  
Sbjct: 553 KAHEIAKEIEKAGFRVGVDERSEGVGYKIRSAQMMRTNYMLVVGDKEIESGLLTVRNRDG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              +D++L + I   S    + 
Sbjct: 613 EETKDVNLADFIAKISEERDSK 634


>gi|294783936|ref|ZP_06749258.1| proline--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294479748|gb|EFG27527.1| proline--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 567

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 124/276 (44%), Positives = 166/276 (60%), Gaps = 4/276 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEI SHKLMLR  MI + + GIY++LPLG + +  +  IIREE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIVSHKLMLRAAMIKKLASGIYAYLPLGYRTIRKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGAEMLRLKDRHERDFVLSPTQEEMITSIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKD YSF  + E     +  M  +
Sbjct: 121 DISSYKSLPLNLYHIQTKFRDERRPRFGLMRGREFTMKDGYSFHTSQESLDEEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S    ++    E    +
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD-GSEYAANIEKAVSE 239

Query: 241 DI---ISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            I         VE    P   T +   + L   L  
Sbjct: 240 LINPPKEELREVELVHTPDCPTIESLAKYLDIPLER 275



 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/186 (39%), Positives = 103/186 (55%), Gaps = 2/186 (1%)

Query: 259 TSDVHNEKLFDSLP-ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +D+   ++ D+     K  SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG Y
Sbjct: 381 VADIRKVRVGDNCITGGKLHSARGIECGQIFKLGDKYSKAMNATYLDENGKTQYMLMGCY 440

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R +AA IE ++D  GIIWP S+AP+ + +I     ++      EKIY  L     
Sbjct: 441 GIGVTRTMAAAIEQNNDENGIIWPVSIAPYIVDVIPANIKNEGQVSLAEKIYNELQAEDI 500

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD  E+ G +F  ADL+GFP +V+VG + V +  VE+K R TG   ++S  EV+  
Sbjct: 501 DVMLDDRDEKPGFKFKDADLIGFPFKVVVGKR-VDEGIVEVKIRRTGETLEVSESEVVAK 559

Query: 438 ASHRFS 443
                 
Sbjct: 560 IKELMK 565


>gi|300767159|ref|ZP_07077071.1| threonine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300494978|gb|EFK30134.1| threonine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 688

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/440 (16%), Positives = 156/440 (35%), Gaps = 34/440 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD  +  ++L L    +  +   G+  W+P G      +   I +++   G  
Sbjct: 274 RRQEARERDHRVIGNELDLF--FVDPKVGNGLPYWMPNGATIRRQIERYIIDKEVANGYQ 331

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + D++ +SG +D Y ++M    D  D   +   P +      I+  HI+SYR
Sbjct: 332 HVYTPVLANLDVYKQSGHWDHYREDMFPPMDMGDGEQLELRPMNCPSHIQIYNHHIRSYR 391

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++ +  R E       +     +  +     +  +  +  + K+    + ++ 
Sbjct: 392 ELPLRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVALDQIEEEFKKILSLMVEVYE 451

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIISL 245
              +     R                  D    + +   D   +       +  DD+   
Sbjct: 452 DFDISDYRFRLS--------------YRDPENKEKYFDDDAMWERSQKMLKSAMDDMGLD 497

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV  +    +L   + +S   ++    F    ++       + GA
Sbjct: 498 YFEAEGEAAFYGPKLDVQTKT---ALGGEETLSTIQLD----FLLPERFD----LKYVGA 546

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DG++H   M     G +  +   +    +     +P  +AP ++++I +           
Sbjct: 547 DGEEHRPVMIHR--GLVSTMERFVAYLTEIYKGAFPTWLAPKQVTIIPVNNG--AHGAYA 602

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E +  RL+  G  V  DD  E++G +   +     P  ++VG + V++  V ++      
Sbjct: 603 ETVRRRLAAEGVRVSIDDRNEKMGYKIRESQTKKVPYLLVVGDQEVANGSVSVRKYGEER 662

Query: 426 REDMSLEEVINYASHRFSNN 445
            E  +++  I   +    + 
Sbjct: 663 TESEAVDMFIGAITQEIKHY 682


>gi|5911945|emb|CAB55948.1| hypothetical protein [Homo sapiens]
          Length = 409

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 138/428 (32%), Positives = 220/428 (51%), Gaps = 35/428 (8%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
            S +LML+ G+I+  S G Y  LP   +A++ +  +I +E    G  ++++P+L  A+LW
Sbjct: 3   KSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVNMPSLSPAELW 62

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKF 139
             + R+D  GKE+LRL DR+ K    GPTHEE +T  I      SY+ LPF  YQ+  KF
Sbjct: 63  QATNRWDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLPFLLYQVTRKF 122

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE RPRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F++LGL  + ++A+ 
Sbjct: 123 RDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNKLGLPFVKVQADV 182

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G IGG +SHEF +  D GE ++                                +  A  
Sbjct: 183 GTIGGTVSHEFQLPVDIGEDRLAICPRC--------------------------SFSANM 216

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
             +   ++     +      +GIEVGH FY GTKYS   +A F    GK    +MG YG+
Sbjct: 217 ETLDLSQMNCPACQGPLTKTKGIEVGHTFYLGTKYSSIFNAQFTNVCGKPTLAEMGCYGL 276

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSKV-- 375
           G  R++AA IE       + WP  +AP++  LI  K    +Q   +   ++Y  +++   
Sbjct: 277 GVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEQAASELIGQLYDHITEAVP 336

Query: 376 --GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSL 431
               +V  DD     IG++   A+  G+P  +I G + + D    E+  + TG    ++ 
Sbjct: 337 QLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALEDPAHFEVWCQNTGEVAFLTK 396

Query: 432 EEVINYAS 439
           + V++  +
Sbjct: 397 DGVMDLLT 404


>gi|28378228|ref|NP_785120.1| threonine--tRNA ligase 1 [Lactobacillus plantarum WCFS1]
 gi|38258333|sp|Q88WU9|SYT_LACPL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28271063|emb|CAD63968.1| threonine--tRNA ligase 1 [Lactobacillus plantarum WCFS1]
          Length = 654

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/440 (16%), Positives = 156/440 (35%), Gaps = 34/440 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD  +  ++L L    +  +   G+  W+P G      +   I +++   G  
Sbjct: 240 RRQEARERDHRVIGNELDLF--FVDPKVGNGLPYWMPNGATIRRQIERYIIDKEVANGYQ 297

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + D++ +SG +D Y ++M    D  D   +   P +      I+  HI+SYR
Sbjct: 298 HVYTPVLANLDVYKQSGHWDHYREDMFPPMDMGDGEQLELRPMNCPSHIQIYNHHIRSYR 357

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++ +  R E       +     +  +     +  +  +  + K+    + ++ 
Sbjct: 358 ELPLRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVALDQIEEEFKKILSLMVEVYE 417

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIISL 245
              +     R                  D    + +   D   +       +  DD+   
Sbjct: 418 DFDISDYRFRLS--------------YRDPENKEKYFDDDAMWERSQKMLKSAMDDMGLD 463

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV  +    +L   + +S   ++    F    ++       + GA
Sbjct: 464 YFEAEGEAAFYGPKLDVQTKT---ALGGEETLSTIQLD----FLLPERFD----LKYVGA 512

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DG++H   M     G +  +   +    +     +P  +AP ++++I +           
Sbjct: 513 DGEEHRPVMIHR--GLVSTMERFVAYLTEIYKGAFPTWLAPKQVTIIPVNNG--AHGAYA 568

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E +  RL+  G  V  DD  E++G +   +     P  ++VG + V++  V ++      
Sbjct: 569 ETVRRRLAAEGVRVSIDDRNEKMGYKIRESQTKKVPYLLVVGDQEVANGSVSVRKYGEER 628

Query: 426 REDMSLEEVINYASHRFSNN 445
            E  +++  I   +    + 
Sbjct: 629 TESEAVDMFIGAITQEIKHY 648


>gi|29345832|ref|NP_809335.1| threonyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|73919769|sp|Q8AAP2|SYT_BACTN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|29337725|gb|AAO75529.1| threonyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 646

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 149/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVLLEEAKKRDHRKIGKEMQLFM-FSETVGKGLPMWLPKGTALRLRLQEFLRRIQTRY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L+V SG Y  YGK+  +        +     P +     +I+++  
Sbjct: 289 DYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEIYKNFP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D    + +   D           +  +
Sbjct: 408 SIVFRSMNFQNFEAQISLR--------------DKVNREKYIGSDDNWEKAEQAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLPAKIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFEL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G+D + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  E++   L         DD  E+IG +    ++   P  +IVG K   + +V ++
Sbjct: 557 KFNEYAEQVKMYLKMHEIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M  EE     +    N
Sbjct: 617 RQGEGDKGTMKYEEFAKILNEEVQN 641


>gi|254556435|ref|YP_003062852.1| threonine-tRNA ligase 1 [Lactobacillus plantarum JDM1]
 gi|308180379|ref|YP_003924507.1| threonine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|254045362|gb|ACT62155.1| threonine-tRNA ligase 1 [Lactobacillus plantarum JDM1]
 gi|308045870|gb|ADN98413.1| threonine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 654

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/440 (16%), Positives = 156/440 (35%), Gaps = 34/440 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD  +  ++L L    +  +   G+  W+P G      +   I +++   G  
Sbjct: 240 RRQEARERDHRVIGNELDLF--FVDPKVGNGLPYWMPNGATIRRQIERYIIDKEVANGYQ 297

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + D++ +SG +D Y ++M    D  D   +   P +      I+  HI+SYR
Sbjct: 298 HVYTPVLANLDVYKQSGHWDHYREDMFPPMDMGDGEQLELRPMNCPSHIQIYNHHIRSYR 357

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++ +  R E       +     +  +     +  +  +  + K+    + ++ 
Sbjct: 358 ELPLRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVALDQIEEEFKKILSLMVEVYE 417

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIISL 245
              +     R                  D    + +   D   +       +  DD+   
Sbjct: 418 DFDISDYRFRLS--------------YRDPENKEKYFDDDAMWERSQKMLKSAMDDMGLD 463

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    DV  +    +L   + +S   ++    F    ++       + GA
Sbjct: 464 YFEAEGEAAFYGPKLDVQTKT---ALGGEETLSTIQLD----FLLPERFD----LKYVGA 512

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DG++H   M     G +  +   +    +     +P  +AP ++++I +           
Sbjct: 513 DGEEHRPVMIHR--GLVSTMERFVAYLTEIYKGAFPTWLAPKQVTIIPVNNG--AHGAYA 568

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E +  RL+  G  V  DD  E++G +   +     P  ++VG + V++  V ++      
Sbjct: 569 ETVRRRLAAEGVRVSIDDRNEKMGYKIRESQTKKVPYLLVVGDQEVANGSVSVRKYGEER 628

Query: 426 REDMSLEEVINYASHRFSNN 445
            E  +++  I   +    + 
Sbjct: 629 TESEAVDMFIGAITQEIKHY 648


>gi|257453020|ref|ZP_05618319.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|257467420|ref|ZP_05631731.1| prolyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 593

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 117/231 (50%), Positives = 158/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEI SH+L+LR GMI + + G+Y++LPLG + L  V  IIREE
Sbjct: 25  MRFSKAYIKTLKETPKEAEIISHQLLLRAGMIKKLASGLYTYLPLGFRTLKKVENIIREE 84

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +P LQ A+LW ESGR++  G+EM+RL DR+ +  + GPT+EEV+TDI R+
Sbjct: 85  MDRAGSQELLMPVLQPAELWQESGRWNVMGEEMVRLKDRHQRDFVLGPTNEEVITDIVRN 144

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ K RDE RPRFG+MRSREF+MKDAYSF  + E     +  M  +
Sbjct: 145 DISSYKSLPINLYHIQTKVRDERRPRFGLMRSREFIMKDAYSFHTSQESLDEEFENMKNT 204

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S       
Sbjct: 205 YTRIFERCGLKFRPVEADSGAIGGSGSQEFHVLAESGEDEIIYSDGCSYAA 255



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 3/185 (1%)

Query: 259 TSDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+   K  +  P    K  SARGIE GHIF  G KYS  + A++    G+   + MG 
Sbjct: 406 VKDIRLVKAGEDCPRSNGKLHSARGIECGHIFKLGDKYSKALGASYLDEKGESKIMLMGC 465

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +AA IE ++D  GIIWP ++AP+ + +I     +       EKIY +L+   
Sbjct: 466 YGIGVGRTMAAAIEQNYDEHGIIWPSALAPYLVDVIPANIKNAEQMQLAEKIYEQLNAEH 525

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            D   DD  E+ G +F  ADL+GFP +VI G K  +++ VE+K R TG   ++ ++E+I+
Sbjct: 526 LDAMLDDRDERPGFKFKDADLIGFPFKVICGKK-AAENIVELKIRKTGETFEIPVDEIIS 584

Query: 437 YASHR 441
                
Sbjct: 585 KIKDL 589


>gi|291279885|ref|YP_003496720.1| threonyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
 gi|290754587|dbj|BAI80964.1| threonyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
          Length = 640

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/438 (18%), Positives = 155/438 (35%), Gaps = 39/438 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD       L L +    +   G+  W P G +    + A  +EE  + G
Sbjct: 229 YLKRLEEAKKRDHRKLGKDLELFSTF-DEIGAGLICWFPKGARIRSIIEAFWKEEHFKNG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  + LW  SG    Y + M    D +       P +      I++S ++SY
Sbjct: 288 YEMLYTPHIGKSTLWETSGHLAFYQENMYSPMDIDGNEYFIKPMNCPFHIMIYKSKVRSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + ++   +R E      G++R R F   DA+      +       ++    LR+
Sbjct: 348 RDLPLRWAELGTVYRYERSGVLHGLLRVRGFTQDDAHIICTQEQIIDE-IKEVLNFSLRM 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +SI     + P                           +    S      D   
Sbjct: 407 WKAFGFESIKGYIATRPEKS-----------------VGDDAMWEKATQSLEGAIKDSGI 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D++    +++    +    F    ++ +    T+  
Sbjct: 450 DFEIDEGGGAFYGPKIDL---KIKDAIGREWQMTTIQFD----FNLPERFDM----TYID 498

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG +     +    +G++     V+   + G   IW           + I        +
Sbjct: 499 KDGKEKRPFMVHRALLGSLERFFGVLIEHYAGAFPIW------LAPIQVRIINVSDAQYE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C++I  +L + G  V +D   E+IG +   A L   P  +I+G+  V    V ++ R  
Sbjct: 553 YCKEIEKKLKEEGIRVEFDSRNEKIGYKIREAQLQKIPHMIIIGNNEVEAKTVSVRLRNG 612

Query: 424 GIREDMSLEEVINYASHR 441
             + ++   E I+     
Sbjct: 613 ENKNNLDFYEYISVLKEL 630


>gi|316984142|gb|EFV63120.1| prolyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 599

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 122/273 (44%), Positives = 171/273 (62%), Gaps = 5/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E     
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIELAPTL 268

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            +    +  +             N K  DSL +
Sbjct: 269 PLKGERAAAQAELV----KVHTPNVKTIDSLVD 297



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPEN--K 275
           F  K + DF               +     +     A      D+ N    D  P+   +
Sbjct: 370 FAGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGR 429

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D 
Sbjct: 430 LKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDE 489

Query: 336 KGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     
Sbjct: 490 KGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAGVLLND 549

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 550 SELLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIVARVTASLN 598


>gi|239831910|ref|ZP_04680239.1| threonyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
 gi|239824177|gb|EEQ95745.1| threonyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
          Length = 674

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 151/445 (33%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 249 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 306

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 307 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDETDDDRVFALKPMNCPGHVQIF 366

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 367 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLRIN 426

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             +  
Sbjct: 427 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMSVL------------DQI 473

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     ++    A Y    +     L D++    +     ++      FG      
Sbjct: 474 QQQSNNIKTGVLPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 524

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   D +      +     G+M     ++  +  G   +W   V     ++     
Sbjct: 525 --AFYIDKDSEKRQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 578

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +   +  A+L   G  V  D   E+I  +     L   P+ ++ G +   ++ V
Sbjct: 579 --SDADEYAAQAAAKLKAAGLQVATDLRNEKINYKVREHSLQKVPVILVCGKREAEENTV 636

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 637 NMRRLGSRDQESMTLDEAIARLVEE 661


>gi|164685973|ref|ZP_01946163.2| threonyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|212218739|ref|YP_002305526.1| threonyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
 gi|164601497|gb|EAX33218.2| threonyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|212013001|gb|ACJ20381.1| threonyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
          Length = 660

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 84/447 (18%), Positives = 148/447 (33%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD  + + K+ L        S G   W P G   +  +   IR  
Sbjct: 235 KALKAYLYRLEEAEKRDHRLLAKKMDLF--HFQPESPGNVFWHPNGWSIILQMREYIRHI 292

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+  P L  A LW +SG  + +G ++  L     +  +  P        IF  
Sbjct: 293 THKYGYQEVHTPQLIDASLWDKSGHLEKFGDDIFSLPLEP-QQYVIKPMSCPAHVQIFNQ 351

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP  + +     R+E      G+MR R F+  DA+ F    +      +    
Sbjct: 352 GVKSYRDLPLRYAEFGACHRNEPSGTLHGLMRLRGFVQDDAHIFCTEDQIQSE-VSAFID 410

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G   +  +  + P     S E    A+    + F  K      +P E    
Sbjct: 411 QLHEVYADFGFTEVIHKLSTRPEKRVGSDEVWTKAEQALAEAFNRKGVEWDILPGE---- 466

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                         A Y    +     L D L    +     ++       G        
Sbjct: 467 -------------GAFYGPKIEF---SLRDCLGRIWQCGTVQVDFSVPERLG-------- 502

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   DG       +    +G+      ++     GK  +W   V    +++       
Sbjct: 503 AHYIAEDGSKKPPVMIHRAILGSFERFLGILLEESAGKLPLWLAPVQVVVMNIT------ 556

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   +    L  +G     D   E+IG +     +   P  V++G + V+D  + +
Sbjct: 557 DRQADYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREVADKTLSV 616

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           +         ++LEE         S  
Sbjct: 617 RALEDEASTTITLEEFARQLKAEISQR 643


>gi|148979813|ref|ZP_01815720.1| prolyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
 gi|145961607|gb|EDK26907.1| prolyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
          Length = 572

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 117/277 (42%), Positives = 163/277 (58%), Gaps = 5/277 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHSRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN---- 236
           Y   F R+GL+  P+ A+SG IGG  S EF VLA++GE  +       D+    E     
Sbjct: 181 YCNAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAF-STESDYAANIEKAEAL 239

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
              ++  +    +E    P A T     E+   ++ +
Sbjct: 240 APTEEAAAPTQEMELVDTPNAKTIAELVEQHGLAIEK 276



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 113/191 (59%), Gaps = 3/191 (1%)

Query: 257 AATSDVHNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A   D+ N    D     +      RGIEVGHIF  G  YS  M+    G DGK+  ++M
Sbjct: 382 AQVEDLRNVIEGDLSPCGQGTLQLKRGIEVGHIFQLGNVYSQAMNCGVLGPDGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +     +  ++A EK+YA L+
Sbjct: 442 GCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHKSEEVKEAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E K+R  G +E ++++ 
Sbjct: 502 AMGIEVLFDDRKERPGVMFSDIELIGIPHTIVIGDRSMKEGNFEYKNRRAGTKEAVAIDS 561

Query: 434 VINYASHRFSN 444
           ++ + + +F+ 
Sbjct: 562 IVEHVTSQFAK 572


>gi|330720665|gb|EGG98912.1| Prolyl-tRNA synthetase [gamma proteobacterium IMCC2047]
          Length = 576

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 119/235 (50%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++ +  L+E+P DA + SHKLMLR GMI + + G+Y+W PLG + L     IIREE
Sbjct: 1   MRATQFPINTLKESPADAAVISHKLMLRAGMIRRLAAGLYTWSPLGLRVLRKSENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW E+GR+  +G E+LR+ DR+ +    GPTHEEV+TD+ R+
Sbjct: 61  MNRAGALELLMPAVQPAELWEETGRWGQFGDELLRVKDRHGREFCIGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE RPRFGVMRSREFLMKDAYSF L  E  + +Y+ M+ +
Sbjct: 121 ELSSYKQLPVNFYQIQTKFRDERRPRFGVMRSREFLMKDAYSFHLDAESLQQTYDAMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y R+F R+GL    + A+SG IGG  S EF VLA++GE  +  S    D+    E
Sbjct: 181 YCRVFERMGLVFRAVDADSGSIGGSQSQEFHVLAESGEDLIAFSDS-SDYAANIE 234



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 61/189 (32%), Positives = 105/189 (55%), Gaps = 5/189 (2%)

Query: 259 TSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+      D       K V  RGIEVGHIF  G KY+  M+AT     G+   + MG 
Sbjct: 386 VADIREVVEGDPSPCGNGKLVFKRGIEVGHIFQLGQKYAAAMNATVLNEKGQAQVMTMGC 445

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D  GIIWP  +APF++ ++ +     +  ++   ++Y  L ++
Sbjct: 446 YGIGVTRVVAAAIEQNNDDNGIIWPAGLAPFQVGIVPMNYDKSEQVKETANRVYQELKEL 505

Query: 376 GCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G DV+ DD  +    G +FA  DL+G P ++++  + + ++++E + R +  R++++ ++
Sbjct: 506 GIDVYMDDRDKKTSPGVKFADMDLIGIPHRIVISDRGLKENQIEYQERRSQERQNLAADQ 565

Query: 434 VINYASHRF 442
           VI +     
Sbjct: 566 VIAFIKETL 574


>gi|237739058|ref|ZP_04569539.1| prolyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
 gi|229423658|gb|EEO38705.1| prolyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
          Length = 567

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 125/276 (45%), Positives = 167/276 (60%), Gaps = 4/276 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR  MI + + GIY++LPLG + +  +  IIREE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAAMIKKLASGIYAYLPLGYRTIRKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGAEMLRLKDRHERDFVLSPTQEEMITSIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKD YSF  + E     +  M  +
Sbjct: 121 DISSYKSLPLNLYHIQTKFRDERRPRFGLMRGREFTMKDGYSFHTSQESLDEEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S    ++    E    +
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD-GSEYAANIEKAVSE 239

Query: 241 DIISLN---SIVEQWTAPYAATSDVHNEKLFDSLPE 273
            I         VE    P   T +   + L   L  
Sbjct: 240 LINPPKEDLREVELVHTPDCPTIESLAKYLDIPLER 275



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/186 (39%), Positives = 102/186 (54%), Gaps = 2/186 (1%)

Query: 259 TSDVHNEKLFDSLP-ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +D+   ++ D+     K  SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG Y
Sbjct: 381 VADIRKVRVGDNCITGGKLHSARGIECGQIFKLGDKYSKAMNATYLDENGKTQYMLMGCY 440

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R +AA IE ++D  GIIWP S+AP+ + +I     ++      EKIY  L     
Sbjct: 441 GIGVTRTMAAAIEQNNDENGIIWPVSIAPYIVDVIPANIKNEGQVSLAEKIYNELQAEDI 500

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD  E+ G +F  ADL+GFP +V+VG +   +  VE+K R TG   ++S  EV+  
Sbjct: 501 DVMLDDRDEKPGFKFKDADLIGFPFKVVVGKR-ADEGIVEVKIRKTGETLEVSESEVVAK 559

Query: 438 ASHRFS 443
                 
Sbjct: 560 IKELMK 565


>gi|257065041|ref|YP_003144713.1| prolyl-tRNA synthetase, family II [Slackia heliotrinireducens DSM
           20476]
 gi|256792694|gb|ACV23364.1| prolyl-tRNA synthetase, family II [Slackia heliotrinireducens DSM
           20476]
          Length = 570

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 109/260 (41%), Positives = 167/260 (64%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  ++P L+E+P DA+I S KL+ R GMI + + G+YS+LPLG + L  +  I+REE 
Sbjct: 11  RMSTMYVPTLKEDPSDADIPSAKLLTRAGMIRKEAAGLYSFLPLGLRVLRKIENIVREEM 70

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+ +P +QSADLW +SGR+ +YG+EM+ + DR+D     GPT EEV+TD+ ++ 
Sbjct: 71  DSHGGEELLMPFVQSADLWRQSGRWGAYGEEMMTMRDRHDNEFCLGPTAEEVITDLVKNE 130

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SY++LP   Y IQLKFRDE RPRFG++RSREF+MKDAYSFD   EG + +Y  M  +Y
Sbjct: 131 LRSYKDLPKNLYHIQLKFRDERRPRFGLLRSREFIMKDAYSFDKDQEGLEVNYQLMRDAY 190

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            R+  R+G++   ++A+ G IGG+ + EF+ LA+TGE ++          +       + 
Sbjct: 191 SRMCERMGMEYRIVQADPGEIGGNGTEEFMTLAETGEAELVYCDCGYAADVEVGECHPNP 250

Query: 242 IISLNSIVEQWTAPYAATSD 261
           +  +   +E+   P   T +
Sbjct: 251 VGYVGDTMEKIATPGLHTIE 270



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/187 (37%), Positives = 107/187 (57%), Gaps = 2/187 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A  D+      D+ P       +ARGIEVG IF  GTKYS  M A F   DG +    MG
Sbjct: 384 AWGDLCTVVAGDACPCCGKPLQAARGIEVGQIFKLGTKYSEAMGALFMDEDGTEKPFIMG 443

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG+G  R +AA +E SHD  GIIWP  +AP  +++I +        +A E + A+L+  
Sbjct: 444 CYGVGVSRCMAAAVEQSHDDMGIIWPVGIAPAHVAVIPLSTKPDEVTEAAEDVAAKLAAA 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G +FA  DL+G+P QV++G + ++   VE+K+R TG + D+++++V+
Sbjct: 504 GLEVCIDDRDERAGVKFADNDLIGWPAQVVIGKRGLAAGTVEVKNRKTGEKTDVAVDDVV 563

Query: 436 NYASHRF 442
           ++     
Sbjct: 564 SFVESLL 570


>gi|237743345|ref|ZP_04573826.1| prolyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|229433124|gb|EEO43336.1| prolyl-tRNA synthetase [Fusobacterium sp. 7_1]
          Length = 567

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 120/251 (47%), Positives = 164/251 (65%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S    ++    E    +
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD-GSEYAANIETAVSE 239

Query: 241 DIISLNSIVEQ 251
            I      +++
Sbjct: 240 LINPPKEELKE 250



 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 75/186 (40%), Positives = 105/186 (56%), Gaps = 2/186 (1%)

Query: 259 TSDVHNEKLFDSLP-ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +D+   K+ ++     K  SARGIE G IF  G KYS  M+AT+    G+ HY+ MG Y
Sbjct: 381 VADIRKVKVGENCITGGKLHSARGIECGQIFKLGDKYSKAMNATYLDEKGQSHYMLMGCY 440

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R +AA IE  +D  GIIWP S+AP+ + +I +   ++   +  EKIY  L +   
Sbjct: 441 GIGVTRTMAAAIEQYNDENGIIWPVSIAPYIVDVIPVNIKNEAQVNLAEKIYNNLQEEKI 500

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD  E+ G +F  ADL+GFP +V+VG K   +  VE+K R TG   ++S  E+IN 
Sbjct: 501 DVMLDDRDEKPGFKFKDADLIGFPFKVVVGKK-AEEGIVELKIRKTGETFEISQNEIINK 559

Query: 438 ASHRFS 443
                 
Sbjct: 560 IKELMK 565


>gi|298384716|ref|ZP_06994276.1| threonine--tRNA ligase [Bacteroides sp. 1_1_14]
 gi|298262995|gb|EFI05859.1| threonine--tRNA ligase [Bacteroides sp. 1_1_14]
          Length = 646

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 149/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVLLEEAKKRDHRKIGKEMQLFM-FSETVGKGLPMWLPKGTALRLRLQEFLRRIQTRY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L+V SG Y  YGK+  +        +     P +     +I+++  
Sbjct: 289 DYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEIYKNFP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D    + +   D           +  +
Sbjct: 408 SIVFRSMNFQNFEAQISLR--------------DKVNREKYIGSDDNWEKAEQAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLPAKIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFEL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G+D + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  E++   L         DD  E+IG +    ++   P  +IVG K   + +V ++
Sbjct: 557 KFNEYAEQVKMYLKMHEIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M  EE     +    N
Sbjct: 617 RQGEGDKGTMKYEEFAKILNEEVQN 641


>gi|330813582|ref|YP_004357821.1| threonyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486677|gb|AEA81082.1| threonyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 638

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 154/439 (35%), Gaps = 39/439 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD       + L      + S G   W   G      +   +R++Q   
Sbjct: 231 EYLHNLEEAEKRDHRKLGKTMDLF--HFQEESPGAVFWHQKGWALFQTLVDFMRQKQLEA 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E++ P +    LW +SG ++ + + M   +  +++     P +      I+   +KS
Sbjct: 289 GYQEVNTPEIIDRVLWEKSGHWEKFQEYMYTTSTPDERTFAIKPMNCPGHCQIYNQGLKS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y++LP    +     R E      G+MR R F   DA+ F    + ++ S        L 
Sbjct: 349 YKDLPLKLSEFGKVHRYEPSGSLHGLMRVRSFTQDDAHIFCTEDQITEESVKVT-KLILD 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I+   G ++I ++    P                           D    +         
Sbjct: 408 IYKAFGFENITLKYADRPAKR-----------------VGDDSVWDQSEKALLEAIKASK 450

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +I +   A Y    +     L D++  + +     +++               AT+ 
Sbjct: 451 VDYTINKGEGAFYGPKIEF---VLRDAIGRDWQCGTLQVDLNLPGRLD--------ATYV 499

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DGK      +     G++     ++    +      P  ++P +++++ I        
Sbjct: 500 DKDGKKKTPVMLHRALFGSLERFTGILI---EHYAGKLPLWLSPVQVAILPIN---DEHH 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  ++I  +L K+      D   E+I  +     +   P+ +I GSK V +  + ++   
Sbjct: 554 DYAKEILNQLEKISIRPIIDLRNEKINYKIREHSVGKIPILMICGSKEVQNKTITLRRLG 613

Query: 423 TGIREDMSLEEVINYASHR 441
              ++  SLE++I+  S  
Sbjct: 614 QEDQQTESLEKIISSLSKE 632


>gi|319638108|ref|ZP_07992872.1| prolyl-tRNA synthetase [Neisseria mucosa C102]
 gi|317400753|gb|EFV81410.1| prolyl-tRNA synthetase [Neisseria mucosa C102]
          Length = 570

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 234



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 108/226 (47%), Gaps = 7/226 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPE--NKRVS 278
           K + DF               +     +     A      D+ N    D  P+   +   
Sbjct: 344 KVYADFATEKGADWIIGANEDDYHYTGFNFGRDAAEPEFVDLRNVIEGDISPDEQGRLKL 403

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRDKYAKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     ++L
Sbjct: 464 IWTKAMAPFEVVIVPMNYKKSDAVREAADKIYAGLLAAGADVLLDDRDERAGVLLNDSEL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG P ++++G + + +  VE   R     + +++ EV+        
Sbjct: 524 LGIPHRIVIGDRALKEGNVEYAERRDNQAQAVAVSEVVAKVLAALK 569


>gi|303258207|ref|ZP_07344214.1| proline--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|302858960|gb|EFL82044.1| proline--tRNA ligase [Burkholderiales bacterium 1_1_47]
          Length = 582

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 129/275 (46%), Positives = 174/275 (63%), Gaps = 5/275 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR  ++F+   +E P DAEI S KLMLR GMI + + G+Y+++P+G ++L  +  I+REE
Sbjct: 1   MRAKQFFISTQKEAPADAEIVSQKLMLRAGMIRKLAAGVYNYMPMGLRSLKKIERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +P +Q A+LW E+GR+  YG E+LR  DR+D+  +  PT EEV+TDI R 
Sbjct: 61  MDRAGAIELLMPIVQPAELWQETGRWQKYGAELLRFKDRHDRDFVLQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKS+R LP  FYQIQ KFRDE RPRFGVMR R+F+MKDAYSFD T E +  SY+KMF +
Sbjct: 121 EIKSWRQLPVNFYQIQTKFRDERRPRFGVMRGRDFVMKDAYSFDRTAEDAGKSYDKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y RIF RLGL    +RA+SG IGG  S EF V+ADTGE  +    D  ++    E  +  
Sbjct: 181 YCRIFDRLGLVYRAVRADSGSIGGSRSQEFQVIADTGEDLIVFCPD-SEYAANIELAEAP 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +        +E+   P     ++  E L   L
Sbjct: 240 CLIEKRAEATETMEKVPTPGRDKCELVVELLNKPL 274



 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ K      RGIEVGH+F+ G KYS PM+AT+   +GK   +QMG
Sbjct: 392 VVADIRNVVEGDVSPDGKGTLKMQRGIEVGHVFFLGDKYSAPMNATYLDENGKPQLLQMG 451

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSK 374
            YGIG  R++ A IE  HD KGIIWPDS+APF + +  +     +  + A  ++Y RL +
Sbjct: 452 CYGIGISRLLGAAIEQGHDDKGIIWPDSIAPFTVVICPVGYDKSEEVQKASNELYGRLRE 511

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD G + G  FA  +L+G P +V +G + + + +VE  HR     E++ + E+
Sbjct: 512 AGIDVILDDRGLRPGVMFADWELIGVPHRVTIGDRGLKNGEVEYAHRGDLQNENVPVSEI 571

Query: 435 INYASHRFS 443
            +    +  
Sbjct: 572 ADKLIAKIK 580


>gi|21674935|ref|NP_663000.1| threonyl-tRNA synthetase [Chlorobium tepidum TLS]
 gi|34222753|sp|Q8KAN0|SYT_CHLTE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21648164|gb|AAM73342.1| threonyl-tRNA synthetase [Chlorobium tepidum TLS]
          Length = 657

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/453 (16%), Positives = 152/453 (33%), Gaps = 41/453 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  +  L+E   RD      +L L   +  +   G+  WLP G    + +   ++ E
Sbjct: 237 KLLKEHIARLEEARKRDHRKLGAELGLFM-LTPEVGSGLPIWLPNGAIIRNELETFLKAE 295

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML---RLADRNDKA--MIYGPTHEEVMT 115
           Q + G + +  P + + +L+  SG Y  Y           D   +    +  P +     
Sbjct: 296 QRKRGYVPVYTPHIGNIELYKRSGHYPYYSDSQFPPLTYKDETGREEQYLLKPMNCPHHH 355

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSY 174
            I+   ++SYR+LP    +    +R E      G++R+R F   D++ +    +      
Sbjct: 356 LIYSQTLRSYRDLPIRLTEFGTVYRHEQSGELNGLVRARGFTQDDSHIYCRPDQLVDE-I 414

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                    +F+ LG   +  R                     +++   + +        
Sbjct: 415 CNAIDLTRFVFNTLGFDEVETRLSLHD-------------PENQSKYGGTAEVWGQAEKD 461

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                D +     I     + Y    D     + D++    ++    ++           
Sbjct: 462 VKEAADRMGIKYFIGIGEASFYGPKIDFI---VRDAIGRKWQLGTVQVDYVMP------- 511

Query: 295 SLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                 ++ G+DG+ H    +     G+M     V+     G   +W   V    + +  
Sbjct: 512 -ERFDLSYIGSDGQKHRPVVIHRAPFGSMERFIGVLIEHTAGNFPLWLAPVQAVVLPIA- 569

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
                +   D   ++YA+L + G     D   E+IG +   A+L   P  +++G      
Sbjct: 570 -----EEVHDYAREVYAKLHEAGIRTELDLRSEKIGKKIREAELSKIPAMLVIGRNEQEK 624

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +V ++    G      ++E+I        + R
Sbjct: 625 GEVSLRRHRKGDEGSFGVDELIARLCEE-RDRR 656


>gi|310641908|ref|YP_003946666.1| prolyl-tRNA synthetase 1 [Paenibacillus polymyxa SC2]
 gi|309246858|gb|ADO56425.1| Prolyl-tRNA synthetase 1 [Paenibacillus polymyxa SC2]
          Length = 581

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 120/245 (48%), Positives = 161/245 (65%), Gaps = 2/245 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  L  L+E P +AE+ SH+LMLR G I Q + G+Y+++PLG++ L  V  I+R+E
Sbjct: 1   MRQSQLLLTTLREAPAEAEVISHQLMLRAGFIRQLAAGMYTYMPLGRRVLRKVEQIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ  +LW ESGRYD YG E++RL DR+D+    GPTHEEV+T + R+
Sbjct: 61  MDRAGAGELLMPVLQPTELWQESGRYDVYGPELMRLQDRHDREFALGPTHEEVITSLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP T YQIQ KFRDE RPRFG++RSREFLMKDAYSFD    G  H+Y  MF +
Sbjct: 121 EVNSYRKLPVTLYQIQTKFRDERRPRFGLLRSREFLMKDAYSFDANWAGLDHTYWTMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL-SHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y RIF R  L    + A++G IGG+  +HEF+ LA+ GE  +       D+    E  + 
Sbjct: 181 YQRIFTRCSLNFRAVEADAGAIGGEGETHEFMALAEIGEDTIVACTCC-DYAANLEKAEP 239

Query: 240 DDIIS 244
               S
Sbjct: 240 RTTGS 244



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/176 (36%), Positives = 99/176 (56%), Gaps = 1/176 (0%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E K    RGIE+GH+F  GTKYS  + ATF  A G D  + MG YGIG  R+++A
Sbjct: 406 CSRCDEGKLELHRGIEIGHVFKLGTKYSEKLGATFLDASGTDQVMIMGCYGIGVSRILSA 465

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++E +HD  G+IWP ++APF++ +I I   D++     E +Y++L   G +V  DD  E+
Sbjct: 466 IVEQNHDQNGMIWPHALAPFQVHIIPISVKDRLQMQIAEDLYSQLQDRGVEVLLDDREER 525

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G +F  +DL+G P +++VG K     KVE   R +  +E + + +V     +   
Sbjct: 526 PGVKFKDSDLVGIPARIVVG-KDAEHGKVEFVERRSSHKESIHIHDVERRILNLIQ 580


>gi|288553027|ref|YP_003424962.1| prolyl-tRNA synthetase [Bacillus pseudofirmus OF4]
 gi|288544187|gb|ADC48070.1| prolyl-tRNA synthetase [Bacillus pseudofirmus OF4]
          Length = 572

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 121/278 (43%), Positives = 167/278 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+    LP L++ P DA+I SH+LMLR GMI Q + G+YS+LPL ++ L  V +I+REE
Sbjct: 1   MRQRSLLLPTLRDVPADADIISHQLMLRAGMIRQIAAGVYSYLPLAKRVLHKVESIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+++PT+  A+LW E+GR+D  G E++RL DR+D+    GPTHEEV+T I R 
Sbjct: 61  MDAAGAQELTMPTMHPAELWQETGRWDKMGGELMRLKDRHDRDFALGPTHEEVITSILRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  TPE    +Y +M+ +
Sbjct: 121 SISSYKKLPVNLYQIQTKFRDERRPRFGLLRGREFMMKDAYSFHATPESLDEAYKEMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL   P+ A+SG IGG  +HEF+ LAD GE  +  S +              
Sbjct: 181 YSRIFSRAGLTFRPVIADSGAIGGKDTHEFMALADVGEDTIAYSDESDYAANIEMAAVKI 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
           + +  +   E  T     ++    E          ++ 
Sbjct: 241 NYVKPDVEAEDRTKVDTGSAKTIEEVSTALSIREDQII 278



 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 1/189 (0%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A      E       +     A+GIEVG +F  GT YS  M+AT    +GK  
Sbjct: 374 DFKVDQYADLRFIKEGDPSPCGKGTIRFAQGIEVGQVFKLGTVYSEAMNATILDENGKTQ 433

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MG YG+G  R VAA+IE  HD  GI+WP SVAP+ + L+ + + +    +  E++Y 
Sbjct: 434 PMIMGCYGVGVSRTVAAIIEQHHDENGIVWPPSVAPYDVHLLTLNSKNAEQSELSEELYQ 493

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K G DV +DD  E+ G +F  +DL+G PL+V VG +  ++  VE+K R +G   +++
Sbjct: 494 SLKKTGFDVLYDDRPERAGVKFKDSDLIGIPLRVSVGKR-AAEGIVEVKIRKSGEVIEVA 552

Query: 431 LEEVINYAS 439
           + ++     
Sbjct: 553 VADLAEVLK 561


>gi|89100585|ref|ZP_01173444.1| threonyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89084689|gb|EAR63831.1| threonyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 423

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/432 (18%), Positives = 155/432 (35%), Gaps = 41/432 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   R+      +L L   M  + + G+  +LP G +  + +  + +++ ++ G  E+  
Sbjct: 25  EAEKRNHRKLGAELELF--MFREEAPGMPFYLPKGMQVRNILENLWKQKHHKAGYHEVKT 82

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +    LW +SG +D Y + M      ++      P        I+ S  +SYR LP  
Sbjct: 83  PIMMKQALWEQSGHWDHYHENMYFSK-VDEHDYAIKPMSCPGAVLIYSSKRRSYRELPLR 141

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           + ++ L  R EL     G++R R F   DA+   +  +  K    K+       +   G 
Sbjct: 142 YAELGLVHRHELSGSLNGLLRVRSFTQDDAH-LFVREDQIKEEAAKVLELVHEFYSLFGF 200

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           +   +   + P       EF+   +T            +    S  +   +      I  
Sbjct: 201 EY-KVELSTRP------EEFMGSEET-----------WNLAEASLESVLQERGIPFEINS 242

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D H   + DSL  + +     ++      FG +        + G D   H
Sbjct: 243 GDGAFYGPKIDFH---ITDSLGRSWQCGTVQLDFQMPEQFGCQ--------YIGEDNLAH 291

Query: 311 YV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +     G++    A++   + G    W             +    +       ++ 
Sbjct: 292 RPIMIHRAIYGSIERFLAILIEHYAGDFPFW------LSPVQAMVLPVSEAHIGYALEVK 345

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           ARL + GC +  D   E++G +   A+L   P  +I+G K +      ++ +  G    +
Sbjct: 346 ARLEEAGCRIDIDSRAEKLGLKIREAELQKVPYMIIIGEKEIEQGGAALRKKGAGNLGVL 405

Query: 430 SLEEVINYASHR 441
            L+E+++     
Sbjct: 406 HLQELLDRFRDE 417


>gi|256028463|ref|ZP_05442297.1| prolyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289766384|ref|ZP_06525762.1| prolyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289717939|gb|EFD81951.1| prolyl-tRNA synthetase [Fusobacterium sp. D11]
          Length = 567

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 120/251 (47%), Positives = 164/251 (65%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDEEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S    ++    E    +
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD-GSEYAANIETAVSE 239

Query: 241 DIISLNSIVEQ 251
            I      +++
Sbjct: 240 LINPPKEELKE 250



 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 75/186 (40%), Positives = 105/186 (56%), Gaps = 2/186 (1%)

Query: 259 TSDVHNEKLFDSLP-ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +D+   K+ ++     K  SARGIE G IF  G KYS  M+AT+    G+ HY+ MG Y
Sbjct: 381 VADIRKVKVGENCITGGKLHSARGIECGQIFKLGDKYSKAMNATYLDEKGQSHYMLMGCY 440

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R +AA IE  +D  GIIWP S+AP+ + +I +   ++   +  EKIY  L +   
Sbjct: 441 GIGVTRTMAAAIEQYNDENGIIWPVSIAPYIVDVIPVNIKNEAQVNLAEKIYNNLQEEKI 500

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD  E+ G +F  ADL+GFP +V+VG K   +  VE+K R TG   ++S  E+IN 
Sbjct: 501 DVMLDDRDEKPGFKFKDADLIGFPFKVVVGKK-AEEGIVELKIRKTGETFEISQNEIINK 559

Query: 438 ASHRFS 443
                 
Sbjct: 560 IKELMK 565


>gi|301629969|ref|XP_002944104.1| PREDICTED: threonyl-tRNA synthetase-like [Xenopus (Silurana)
           tropicalis]
          Length = 841

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 145/444 (32%), Gaps = 37/444 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    I +H+ G   W P G      V   +R     
Sbjct: 229 QQYLHMLEEAEKRDHRKLGRELDLF--HIDEHAPGTVFWHPKGWMLWQEVEQYMRRVYRD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +D Y + M  + +   +     P +      IF+  IK
Sbjct: 287 NGYQEVKGPQILDKTLWEKTGHWDKYRENMF-ITESEKRDYALKPMNCPGHILIFKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +     R+E      G+MR R F   D + F  T +  +           
Sbjct: 346 SYRDLPLRFGEFGNCHRNEPTGGLHGIMRVRGFTQDDGHIFC-TEDMIQSEVATFTTLLQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           R++   G   I  R  + P     S E                   D    +        
Sbjct: 405 RVYRDFGFTEILYRLSTRPEKRIGSEE-----------------SWDRAESALAEGLRAS 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                 +    A Y    +     L D+L    +     ++              + A F
Sbjct: 448 GCTFEYLPGEGAFYGPKIEY---VLKDALGREWQCGTIQVDPNMP--------ERLDAEF 496

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG  H   +     +G++     ++     G   +W          L    A    C
Sbjct: 497 VGEDGARHRPIVLHRAIVGSLERFIGILIEQFAGALPVWL--APVQVAVLNITDAQADYC 554

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           R+   K++  L         D   E+I  +     L   P  ++VG K  +   V ++ R
Sbjct: 555 REIAAKLHKALPNQSLRAVTDLRNEKITYKIREHALQKLPYILVVGDKEKAAGAVAVRAR 614

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS++  +   +   ++ 
Sbjct: 615 GNKDLGVMSIDAFVELIARDIASK 638


>gi|325923311|ref|ZP_08184984.1| prolyl-tRNA synthetase, family II [Xanthomonas gardneri ATCC 19865]
 gi|325546238|gb|EGD17419.1| prolyl-tRNA synthetase, family II [Xanthomonas gardneri ATCC 19865]
          Length = 564

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 116/235 (49%), Positives = 155/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR++ +G ++L++ DR ++   Y PT EE   +  R 
Sbjct: 61  MNRAGAVEVLFPTIQPRELWDATGRWEKFGGQLLKIKDRKEQEFCYSPTAEEAAAEFARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF LT E     Y+ M  +
Sbjct: 121 EINSYKQLPLNFYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLTDEDMAREYDNMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL+   ++A+SG IGGD S EF V+A +GE  +       D+    E
Sbjct: 181 YTRIFTRLGLEFRAVQADSGAIGGDASQEFHVIAASGEDSLAF-STASDYAANVE 234



 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 1/166 (0%)

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            +   ARGIEVGH+F  G++Y+  + AT    +GK   ++MG YGIG  R+VAA IE +H
Sbjct: 397 GELRLARGIEVGHVFQLGSQYAQALQATVIDENGKLAVMKMGCYGIGISRIVAAAIEQNH 456

Query: 334 DGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           D  GIIWP  +AP+++ +  I    D     A   +   L   G +   DD G + G+ F
Sbjct: 457 DEAGIIWPAPMAPWQVVVCVINPKQDPQVIAAAGALLDELIAAGIEAALDDRGLRPGAMF 516

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           A  +LLG P +V+V  + ++    E + R     E++    + +  
Sbjct: 517 ADMELLGIPHRVVVSERGLAAGTFEYRARTAEAAENLDKAGLFSRL 562


>gi|224499901|ref|ZP_03668250.1| prolyl-tRNA synthetase [Listeria monocytogenes Finland 1988]
          Length = 568

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 124/294 (42%), Positives = 168/294 (57%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S    D+   +E     
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSD-ASDYAANTEMAPVL 239

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                   L   +E++  P   +     E L   + +  +     ++   I   
Sbjct: 240 YMEKKSHELEKDLEKFVTPDQKSITDIVEFLEVPIEKTMKSMLYQVDDEVIMVL 293



 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 383 DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G +W   ++PF + LI +    +      E +Y  L   G  
Sbjct: 443 IGVSRILSAIAEQSNDENGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYTSLQDAGFS 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N  
Sbjct: 503 VLIDDRAERAGVKFADADLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTL 561


>gi|73919786|sp|Q83C10|SYT_COXBU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 651

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 147/447 (32%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD  + + K+ L        S G   W P G   +  +   IR  
Sbjct: 226 KALKAYLYRLEEAEKRDHRLLAKKMDLF--HFQPESPGNVFWHPNGWSIILQMREYIRHI 283

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+  P L  A LW +SG  + +G ++  L     +  +  P        IF  
Sbjct: 284 THKYGYQEVHTPQLIDASLWDKSGHLEKFGDDIFSLPLEP-QQYVIKPMSCPAHVQIFNQ 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP  + +     R+E      G+MR R F+  DA+ F    +      +    
Sbjct: 343 GVKSYRDLPLRYAEFGACHRNEPSGTLHGLMRLRGFVQDDAHIFCTEDQIQSE-VSAFID 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G   +  +  + P     S E    A+    +    K      +P E    
Sbjct: 402 QLHEVYADFGFTEVIHKLSTRPEKRVGSDEVWTKAEQALAEALNRKGVEWDILPGE---- 457

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                         A Y    +     L D L    +     ++       G        
Sbjct: 458 -------------GAFYGPKIEF---SLRDCLGRIWQCGTVQVDFSVPERLG-------- 493

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   DG       +    +G+      ++     GK  +W   V    +++       
Sbjct: 494 AHYIAEDGSKKPPVMIHRAILGSFERFLGILLEESAGKLPLWLAPVQVVVMNIT------ 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   +    L  +G     D   E+IG +     +   P  V++G + V+D  + +
Sbjct: 548 DRQADYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREVADKTLSV 607

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           +         ++LEE         S  
Sbjct: 608 RALEDEASTTITLEEFARQLKAEISQR 634


>gi|160900048|ref|YP_001565630.1| threonyl-tRNA synthetase [Delftia acidovorans SPH-1]
 gi|238687213|sp|A9C3D4|SYT_DELAS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160365632|gb|ABX37245.1| threonyl-tRNA synthetase [Delftia acidovorans SPH-1]
          Length = 643

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 141/444 (31%), Gaps = 37/444 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    I +HS G   W P G      V   +R     
Sbjct: 233 QQYLHMLEEAEKRDHRKLGRELDLF--HIDEHSPGTVFWHPKGWSLWQEVEQYMRRVYRD 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW ++G +D Y + M    +   +     P +      IF+  IK
Sbjct: 291 NGYQEVKGPQILDKTLWEKTGHWDKYRENMFT-TESEKRDYALKPMNCPGHILIFKQGIK 349

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F   D + F    +              
Sbjct: 350 SYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHVFCTEDQIQPEVLAFTT-LLQ 408

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   I  +  + P     S E                   D    +     +  
Sbjct: 409 KVYADFGFSDIIYKVATRPEARIGSDE-----------------SWDKAEAALINSLEAS 451

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I     A Y    +     L D++    +     ++              + A +
Sbjct: 452 GCEYVISPGDGAFYGPKIEY---TLKDAIGRQWQCGTIQVDFSMP--------ERLDAEY 500

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG  H    +    +G++     ++   H G    W          L    A     
Sbjct: 501 VGEDGDRHRPVMLHRAIVGSLERFIGILIEQHAGAMPTWL--APVQAAVLNITDAQADYV 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           R+  +K+       G  V  D   E+I  +     L   P  ++ G K  +   V ++ R
Sbjct: 559 REVAQKLQKAFPNQGLRVATDLRNEKITYKIREHSLQKLPYILVAGDKEKAAGAVAVRAR 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS++  I   +   +  
Sbjct: 619 GNKDLGVMSVDAFIELVAKDIAAK 642


>gi|269925242|ref|YP_003321865.1| threonyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269788902|gb|ACZ41043.1| threonyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 596

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 146/445 (32%), Gaps = 37/445 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y   + +   RD       L L   MI  +   G+  WLP G      +   I + + R 
Sbjct: 185 YLWRLEEAKRRDHRKIGRDLELF--MISDEVGPGLVLWLPNGSIIRRELENFIVKAEARE 242

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIK 123
           G   +  P +    L+  SG +  Y   M       + +     P        I++  ++
Sbjct: 243 GYQHVYTPHIAKLGLYKTSGHWQHYRDAMFPPMVLEDGEEYELRPMTCPHHIMIYKHSLR 302

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    ++   +R E      G+ R R F + DA+ F   P+  K  + ++     
Sbjct: 303 SYRDLPLRIAELGTVYRYEKSGELTGMSRVRGFTINDAHIFCR-PDQLKEEFIRVIQLMH 361

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++  +G      R                       +     +  +    +     D++
Sbjct: 362 EVYRAVGFHDYVYRLSLRDPSDKE-------------KYVEGDEMWNNAENAIRQALDEL 408

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
            +     E   A Y    DV    + D L      S   ++    FY   ++       +
Sbjct: 409 GADYVEAEGEAAFYGPKLDVM---VRDVLGREFAASTNQLD----FYLPERFD----LEY 457

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG+      +    IG+M    A +   H G   +W   V    I +          
Sbjct: 458 IDADGERRRPVMIHRAPIGSMERFFAFLTEQHAGAFPVWLSPVQVVVIPIA------DRH 511

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E++ +  S+    V  D   E++ ++   A +   P  +IVG +      V ++ R
Sbjct: 512 IPYAEEVASAFSRHNVRVNVDARNERMNAKIRDAQMQKIPYMLIVGDREAQAGTVAVRKR 571

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                +   +++V+          +
Sbjct: 572 SGEDLKGQPVQDVVQMVLDDIREYK 596


>gi|215919162|ref|NP_820316.2| threonyl-tRNA synthetase [Coxiella burnetii RSA 493]
 gi|206584046|gb|AAO90830.2| threonyl-tRNA synthetase [Coxiella burnetii RSA 493]
          Length = 660

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 147/447 (32%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD  + + K+ L        S G   W P G   +  +   IR  
Sbjct: 235 KALKAYLYRLEEAEKRDHRLLAKKMDLF--HFQPESPGNVFWHPNGWSIILQMREYIRHI 292

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+  P L  A LW +SG  + +G ++  L     +  +  P        IF  
Sbjct: 293 THKYGYQEVHTPQLIDASLWDKSGHLEKFGDDIFSLPLEP-QQYVIKPMSCPAHVQIFNQ 351

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP  + +     R+E      G+MR R F+  DA+ F    +      +    
Sbjct: 352 GVKSYRDLPLRYAEFGACHRNEPSGTLHGLMRLRGFVQDDAHIFCTEDQIQSE-VSAFID 410

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G   +  +  + P     S E    A+    +    K      +P E    
Sbjct: 411 QLHEVYADFGFTEVIHKLSTRPEKRVGSDEVWTKAEQALAEALNRKGVEWDILPGE---- 466

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                         A Y    +     L D L    +     ++       G        
Sbjct: 467 -------------GAFYGPKIEF---SLRDCLGRIWQCGTVQVDFSVPERLG-------- 502

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   DG       +    +G+      ++     GK  +W   V    +++       
Sbjct: 503 AHYIAEDGSKKPPVMIHRAILGSFERFLGILLEESAGKLPLWLAPVQVVVMNIT------ 556

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   +    L  +G     D   E+IG +     +   P  V++G + V+D  + +
Sbjct: 557 DRQADYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREVADKTLSV 616

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           +         ++LEE         S  
Sbjct: 617 RALEDEASTTITLEEFARQLKAEISQR 643


>gi|71898157|ref|ZP_00680343.1| Prolyl-tRNA synthetase, bacterial [Xylella fastidiosa Ann-1]
 gi|71732131|gb|EAO34187.1| Prolyl-tRNA synthetase, bacterial [Xylella fastidiosa Ann-1]
          Length = 564

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 114/223 (51%), Positives = 151/223 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+R+E
Sbjct: 1   MRLSEFHLHTTKEIPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM +PT+Q  +LW ES R++ +G ++L++ DR      Y PT EE +TD  R 
Sbjct: 61  MNRAGAVEMLLPTIQPRELWEESERWEKFGSQLLKIKDRKQAEYCYSPTAEEAVTDYVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L        Y  M  +
Sbjct: 121 ELTSYKQLPVNFYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLNDADLVREYENMRAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE  +  
Sbjct: 181 YTRIFTRLGLEFRSVQADSGAIGGDASQEFHVIADSGEDVLAF 223



 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/184 (34%), Positives = 95/184 (51%), Gaps = 2/184 (1%)

Query: 258 ATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             +D+ N    D ++   K   ARGIEVGH+F  G KY+  M AT     GK   + MG 
Sbjct: 380 VVADIRNVIEGDRAVDGGKICIARGIEVGHVFQLGRKYTEAMKATVLDEYGKAVTMTMGC 439

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+VAA IE +HD  GIIWP  +AP+++++  I    D V   A E + A L   
Sbjct: 440 YGIGVSRIVAAAIEQNHDVAGIIWPAPIAPWQVAVCVINPKKDPVITAAAELLLAELQSA 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D   DD G + G  FA  +L+G P +++V  + ++    E + R T + E++    ++
Sbjct: 500 DVDTVLDDRGLRPGVMFADMELIGIPHRIVVSERGLAAGTYEYRARRTAMVENLDKTTLL 559

Query: 436 NYAS 439
               
Sbjct: 560 TRIK 563


>gi|150396275|ref|YP_001326742.1| threonyl-tRNA synthetase [Sinorhizobium medicae WSM419]
 gi|166225503|sp|A6U8C7|SYT_SINMW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150027790|gb|ABR59907.1| threonyl-tRNA synthetase [Sinorhizobium medicae WSM419]
          Length = 660

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 146/444 (32%), Gaps = 39/444 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L      +   G+  W   G +   ++ A +R      
Sbjct: 233 QYLHVLAEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHGKGWRIFQSLVAYMRRRLE-G 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFR 119
              E++ P +    LW  SG +  Y   M ++        +D+     P +      IF+
Sbjct: 290 DYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIFK 349

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             +KSYR LP    +     R E      G+MR R F   DA+ F    + +        
Sbjct: 350 HGLKSYRELPVRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKIN- 408

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   G K I ++  + P     S E    A+   T+V          I +++  
Sbjct: 409 DLILSVYEDFGFKEIVVKLSTRPEKRVGSDELWDRAEAVMTEVL-------KTIEAQSEG 461

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                 L        A Y    +     L D++    +     ++      FG       
Sbjct: 462 RIKTGIL----PGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------- 507

Query: 299 SATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +      K   V +     G+M     ++  +  G   +W           + +   
Sbjct: 508 -AFYIDSESEKRQPVMIHRAICGSMERFLGILLENFAGHMPLW------ISPLQVVVATI 560

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++  RL   G  V  D   E+I  +     +   P+ V+ G +   +  V 
Sbjct: 561 TSEADDYGREVAERLRDAGLTVETDFRNEKINYKVREHSVTKVPVIVVCGKREAEERSVN 620

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           I+   +  +  MSL+E +   S  
Sbjct: 621 IRRLGSQAQTAMSLDEAVASLSAE 644


>gi|40062682|gb|AAR37595.1| threonyl-tRNA synthetase [uncultured marine bacterium 314]
          Length = 638

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 154/439 (35%), Gaps = 39/439 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y L + +   RD      ++ L      + S G   W   G      +   +R +Q + 
Sbjct: 231 EYLLRLEEIEKRDHRKLGKEMDLF--HFREESPGAVFWHHKGWTLFQTLVGYMRLKQKKA 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E++ P +   +LW +SG ++ +G+ M      + K     P +      IF   +KS
Sbjct: 289 GYKEINTPEILDKNLWEQSGHWEKFGENMFTSETPDKKTFAIKPMNCPGCLQIFNQGLKS 348

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R E      G++R R F   DA+ F    + +      +    L 
Sbjct: 349 YRDLPLRLSEFGKVHRYEPSGALHGLLRVRAFTQDDAHIFCTEDQITDEC-LSVTNLILE 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I+  LG K++ ++    P                  +        D    +         
Sbjct: 408 IYKDLGFKNVLLQYSDRP-----------------QKRVGDDKIWDKAESALLKAIKQSK 450

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I +   A Y    D     L D++  + +     +++      G        A++ 
Sbjct: 451 LKYEINKGEGAFYGPKIDF---VLRDTIGRDWQCGTLQVDLNLPSRLG--------ASYV 499

Query: 304 GADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            +DG     V +     G++     ++   + GK  +W   +    + +           
Sbjct: 500 SSDGSKKVPVMLHRALFGSLERFIGILIEHYAGKLPLWLAPIQAVVLPIA------SEFD 553

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  +KI+ +  K G +   D   ++I  +     L   PL +I G K V    V I+   
Sbjct: 554 NYAKKIFEQCMKAGINTEVDLKNKKINYKIREHSLSKVPLLLICGEKEVKGKSVTIRKLG 613

Query: 423 TGIREDMSLEEVINYASHR 441
           +  +E +SL+  I   S +
Sbjct: 614 SEKQETLSLDRAIKKISQQ 632


>gi|241760072|ref|ZP_04758170.1| proline--tRNA ligase [Neisseria flavescens SK114]
 gi|241319526|gb|EER55956.1| proline--tRNA ligase [Neisseria flavescens SK114]
          Length = 595

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 118/235 (50%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  I+REE
Sbjct: 26  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENIVREE 85

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 86  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 145

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 146 EVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQNMYDA 205

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGLK  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 206 YCRIFTRLGLKFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 259



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 7/226 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPE--NKRVS 278
           K + DF               +     +     A      D+ N    D  P+   +   
Sbjct: 369 KVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVIEGDISPDEQGRLKL 428

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 429 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 488

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +W  ++APF++ ++ +     +  R+A +KIYA L   G DV  DD  E+ G     ++L
Sbjct: 489 VWTKAMAPFEVVIVPMNYKKSEAVREAADKIYAELLAAGADVLLDDRDERAGVLLNDSEL 548

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG P ++++G + + +  VE   R     + +++ EV+       +
Sbjct: 549 LGIPHRIVIGDRALKEGNVEYAERRDNQAQAVAVSEVVAKVLTALN 594


>gi|218134037|ref|ZP_03462841.1| hypothetical protein BACPEC_01927 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991412|gb|EEC57418.1| hypothetical protein BACPEC_01927 [Bacteroides pectinophilus ATCC
           43243]
          Length = 585

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 163/442 (36%), Gaps = 34/442 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           L +L+E   RD       + L   M+     +G+  +LP G      +   I++++ + G
Sbjct: 172 LQLLEEAKERDHRKIGKDMGLF--MVDDLIGRGLPMFLPKGYVIWQELENYIKDKERKLG 229

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            + +  P + + +L+  SG +D Y + M    D + ++ +  P +      I+ + + SY
Sbjct: 230 YLHVMTPCIGTVNLYKTSGHWDHYKENMFPAMDVDGESFVLRPMNCPHHMMIYANRMHSY 289

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +I   FR E      G+ R R F   DA+ F  TPE  +  + ++       
Sbjct: 290 KDLPIRIGEIAHDFRYESSGTLKGIERGRHFCQNDAHIFV-TPEQIEDEFKRVVDLIFST 348

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G+               + +      D  E          +    +  T  +D+  
Sbjct: 349 YKDFGITDYRCVLSLRDPADKVKY-----HDDDEM--------WNKAEDALRTVLNDLGI 395

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +      A Y    DV    +  ++     +S   ++    F    K+    + T+  
Sbjct: 396 EYTEEIGEAAFYGPKLDV---NVKPAVGNEYTLSTCQLD----FCLPAKF----NLTYID 444

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+     +     +G++    A I    +      P  +AP ++ ++ +K  ++   +
Sbjct: 445 KDGEKKTPVVLHRAILGSLDRFMAYIL---EETKGNLPTWLAPVQVRVMPVKTDNEELME 501

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I + L +    V  DD GE++G +     +   P  +++G     D  V  +    
Sbjct: 502 YAHEICSALEEKNVRVELDDRGEKLGYRMREGQIQKVPYLLVIGFNEKEDRTVSYRLHGE 561

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + L+E +        N 
Sbjct: 562 ADTTVLGLDEFVEKIDSEIKNK 583


>gi|51473419|ref|YP_067176.1| threonyl-tRNA synthetase [Rickettsia typhi str. Wilmington]
 gi|73919822|sp|Q68XE8|SYT_RICTY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|51459731|gb|AAU03694.1| Threonine translase [Rickettsia typhi str. Wilmington]
          Length = 635

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 158/443 (35%), Gaps = 40/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
            Y   + +   RD      +L L      + ++G+  W   G    + +   IR++  + 
Sbjct: 230 NYLFMLEEAEKRDHRKIGKELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKNRKN 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G IE+  P L    LW  SG +  +  +M  L + +DK +   P +      IF+  IKS
Sbjct: 288 GYIEVKTPVLVDKSLWEASGHWAKFRCDMFTL-ETDDKILALKPMNCPCHVQIFKQGIKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +  L  R+E      G+MR R  +  DA+ F    + +  +  +       
Sbjct: 347 YRDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCAEEQITDETV-RFCKLLTE 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   I ++    P     + E                   D    +  T  + + 
Sbjct: 406 VYKDFGFTDIKVKFSDRPEIRAGNDE-----------------VWDKAEHALKTAVEKVG 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            + ++     A Y    +     L D++    +     ++    F    +    + A + 
Sbjct: 449 FIYTLNPGDGAFYGPKLEF---VLTDAIGRQWQCGTLQMD----FVLPER----LDANYI 497

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            A G+      +    +G++     ++   + GK  IW   V     ++ N         
Sbjct: 498 AASGEKKRPVMLHRAILGSLERFIGILIEEYAGKFPIWLAPVQVAIATITN------DLN 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   ++   L         +   ++I  +         P+  ++G K  ++ +V I+   
Sbjct: 552 DYALEVQKTLIDNNIRTDINISPDKINYKIREFSNQKIPMIAVIGKKEQANKQVTIRKFG 611

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           T  +E +S+E++I       SN 
Sbjct: 612 TTGQEILSIEQLIAMIKKENSNY 634


>gi|55981844|ref|YP_145141.1| threonyl-tRNA synthetase [Thermus thermophilus HB8]
 gi|7388285|sp|P56881|SYT_THET8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|6689424|emb|CAB65483.1| threonyl-tRNA synthetase [Thermus thermophilus]
 gi|55773257|dbj|BAD71698.1| threonyl-tRNA synthetase [Thermus thermophilus HB8]
          Length = 659

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 86/451 (19%), Positives = 157/451 (34%), Gaps = 41/451 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
             +Y   + +   RD      +L L   +I     KG+  WLP G    + + A +REEQ
Sbjct: 238 LKEYLWQLEEAKKRDHRRLGRELELF--LIDPLVGKGLVLWLPKGNVVREELMAFMREEQ 295

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDI 117
            R G   ++ P + S +L+  SG Y  Y +         ++      +  P +      I
Sbjct: 296 VRRGYQLVTTPHIGSLELYKTSGHYPYYAESQFPPISFKERGEEEEYLLKPMNCPHHIRI 355

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +    +SYR LP    +    +R E      G+ R R F   DA+ F    E     +  
Sbjct: 356 YAYRKRSYRELPLRLAEFGTVYRYEKAGELLGLTRVRGFTQDDAHIFCTPEEVKGE-FLG 414

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L++F  LGLK    R              I + D    +    +           
Sbjct: 415 VLDLVLKVFATLGLKDYRAR--------------IGVRDPKSDKYVGDEAKWALAERQIE 460

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               +     ++ E   A Y    D     + D+L    ++    ++      FG     
Sbjct: 461 EAAAEAGLRYTVEEGDAAFYGPKLDF---VVKDALGREWQLGTIQVDYNLPERFG----- 512

Query: 297 PMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+ G DG++H    +     G++     ++     G   +W   V    + +    
Sbjct: 513 ---LTYVGKDGEEHRPVMLHRAPFGSLERFIGILIEHFAGDFPLWLAPVQAVVVPV---- 565

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   D   ++  RL + G     D   E++ ++   A++   P  ++VG +  ++  
Sbjct: 566 --SEKQEDYAREVAGRLKEAGLRAEADTRPERMQARIRDAEVQKVPYILVVGEREKAEGA 623

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           V ++ R  G    M L   +  A   +   R
Sbjct: 624 VSVRRRKKGNLGTMPLAAFLEGALREYRERR 654


>gi|27380648|ref|NP_772177.1| threonyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
 gi|27353813|dbj|BAC50802.1| threonyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
          Length = 723

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 138/443 (31%), Gaps = 39/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W P G      + A +R       
Sbjct: 300 YLKQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHPKGWTIFQQLIAYMRRRLT-GD 356

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG +  Y + M       D     +     P +      IF+ 
Sbjct: 357 YSEVNAPQILDKVLWETSGHWGWYRENMFAAQSAGDEAEDKRWFALKPMNCPGHVQIFKH 416

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + ++       +
Sbjct: 417 GLKSYRDLPLRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIFCTEDQLAEECLKINDL 476

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                        + ++  + P     +      A+     V       +  I +E    
Sbjct: 477 ILSTYADFGFTGDLTVKLSTRPDKRVGTDAMWDHAERVMATVLREIQSQNNHIKTE---- 532

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   I     A Y    +     L D++  + +     ++      FG        
Sbjct: 533 --------INPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVDFNLPERFG-------- 573

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   DG K   V +     G+M     ++   + G   +W             +    
Sbjct: 574 AFYIDHDGGKKPPVMVHRAICGSMERYIGILIEHYAGNFPLW------LSPVQAVVTTIT 627

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  +++  +  + G  V  D   E+I  +     L   P  ++VG K      V +
Sbjct: 628 SEGDEYAKQVLEQARRAGLRVEIDLRNEKINYKVREHSLAKIPALLVVGKKEAETHSVSV 687

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  ++ M+  E I      
Sbjct: 688 RRLGSDGQKVMTTAEAIAALVEE 710


>gi|302339715|ref|YP_003804921.1| threonyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301636900|gb|ADK82327.1| threonyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 585

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 148/444 (33%), Gaps = 39/444 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E   RD      +L L +    +   G+  W P G +    +    ++E  +
Sbjct: 175 RLYLKHLEEMEKRDHRKLGRELDLFSLH-EEAGPGLVYWHPKGARIRHQIETFWKDEHFK 233

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y + M      +       P +      I++++  
Sbjct: 234 NGYELLYTPHVGKSWLWETSGHLDFYAEGMYPEMVMDKANYYAKPMNCPFHIMIYKTNKH 293

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LPF + ++   +R E      G+MR R F   DA+ F  TPE  +    ++    L
Sbjct: 294 SYRELPFRWAELGTVYRYEKSGTLHGLMRVRGFTQDDAHIFC-TPEQVEDEILEVLRFSL 352

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G   I     + P                  +     +       S     +  
Sbjct: 353 HMLRAFGFSDIQAYLSTRP-----------------EKAVGDPEQWKLAEASLQKAIEAE 395

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                + E   A Y    D+   K+ D+L  + ++S    +      FG         TF
Sbjct: 396 GLAYEVDEGGGAFYGPKIDL---KVKDALGRSWQLSTVQFDFNEPKRFG--------MTF 444

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG +     +    +G++     V+   + G   +W   V    I +          
Sbjct: 445 VDHDGKEKQPYMVHRALLGSIERFFGVLIEHYGGAFPVWLSPVQVQVIPVAP------AF 498

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               + +   L +       D    ++ ++   A     P  +I+G K      V ++ R
Sbjct: 499 EAYAKSVETELRRHDLRADVDLSDSRMNAKIRNAQKEKIPYMLILGEKEQESRSVSVRKR 558

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  ++L+E I       ++ 
Sbjct: 559 NGEQVNGLALDEFIAQTLKIIASK 582


>gi|307822387|ref|ZP_07652619.1| prolyl-tRNA synthetase [Methylobacter tundripaludum SV96]
 gi|307736953|gb|EFO07798.1| prolyl-tRNA synthetase [Methylobacter tundripaludum SV96]
          Length = 569

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 121/237 (51%), Positives = 165/237 (69%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++ L  ++E P DAEIASH+LM+R G+I + + G+Y+WLPLG + +  V  I REE
Sbjct: 1   MRTTQFPLNTVKETPADAEIASHQLMIRAGLIRKLAAGLYTWLPLGLRVMRKVEKITREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +TGA+E+ +P LQ A+LW E+GR++ YG E+ RL DR+D+    GPTHEE++TD+ R+
Sbjct: 61  MEKTGALEVLMPGLQPAELWQETGRWEQYGPELARLKDRHDRDFCLGPTHEEIITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T+YQIQ KFRDE+RPRFGVMRSREF+MKDAYSF L  E  + +Y  M  +
Sbjct: 121 EIKSYKQLPITYYQIQSKFRDEIRPRFGVMRSREFIMKDAYSFHLDHESLQVTYEAMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF+ LGL    + A+SG IGG +SHEF VLAD+GE  +       ++    E  
Sbjct: 181 YTNIFNHLGLNFRAVIADSGSIGGAVSHEFHVLADSGEDAIAF-STDSEYAANVEKA 236



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/186 (37%), Positives = 102/186 (54%), Gaps = 3/186 (1%)

Query: 260 SDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+      D  P+ K      RGIEVGHIF  GTKYS  M A      GK+  + MG Y
Sbjct: 383 ADLRMVVEGDPSPDGKGQITLARGIEVGHIFQLGTKYSEAMKAGVINEGGKNQIMTMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVG 376
           GIG  RVVAA IE +HD KGIIWP ++APF+++L  +     +  ++A EK+Y  L   G
Sbjct: 443 GIGISRVVAAAIEQNHDDKGIIWPTNLAPFQVALCPMNMHKSERLKEASEKLYQDLLAAG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV +DD   + G  F+  +L+G P  ++VG + +    VE K R     E++   ++I+
Sbjct: 503 IDVLFDDRKVRAGFMFSDMELIGIPHCIVVGDRGLDSGTVEYKARTAEANEEIPFADIID 562

Query: 437 YASHRF 442
           +   + 
Sbjct: 563 FLKAKL 568


>gi|331000280|ref|ZP_08323964.1| proline--tRNA ligase [Parasutterella excrementihominis YIT 11859]
 gi|329572446|gb|EGG54099.1| proline--tRNA ligase [Parasutterella excrementihominis YIT 11859]
          Length = 582

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 129/275 (46%), Positives = 174/275 (63%), Gaps = 5/275 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR  ++F+   +E P DAEI S KLMLR GMI + + G+Y+++P+G ++L  +  I+REE
Sbjct: 1   MRAKQFFISTQKEAPADAEIVSQKLMLRAGMIRKLAAGVYNYMPMGLRSLKKIERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GAIE+ +P +Q A+LW E+GR+  YG E+LR  DR+D+  +  PT EEV+TDI R 
Sbjct: 61  MDRAGAIELLMPIVQPAELWQETGRWQKYGSELLRFKDRHDRDFVLQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKS+R LP  FYQIQ KFRDE RPRFGVMR R+F+MKDAYSFD T E +  SY+KMF +
Sbjct: 121 EIKSWRQLPVNFYQIQTKFRDERRPRFGVMRGRDFVMKDAYSFDRTAEDAGKSYDKMFEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y RIF RLGL    +RA+SG IGG  S EF V+ADTGE  +    D  ++    E  +  
Sbjct: 181 YCRIFDRLGLVYRAVRADSGSIGGSRSQEFQVIADTGEDLIVFCPD-SEYAANIELAEAP 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +        +E+   P     ++  E L   L
Sbjct: 240 CLIEKRAEATETMEKVPTPGRDKCELVVELLNKPL 274



 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ K      RGIEVGH+F+ G KYS PM+AT+   +GK   +QMG
Sbjct: 392 VVADIRNVVEGDVSPDGKGTLKMQRGIEVGHVFFLGDKYSAPMNATYLDENGKPQLLQMG 451

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSK 374
            YGIG  R++ A IE  HD KGIIWPDS+APF + +  +     +  + A  ++Y RL +
Sbjct: 452 CYGIGISRLLGAAIEQGHDDKGIIWPDSIAPFTVVICPVGYDKSEEVQKASNELYGRLRE 511

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD G + G  FA  +L+G P +V +G + + + +VE  HR     E++ + E+
Sbjct: 512 AGIDVILDDRGLRPGVMFADWELIGVPHRVTIGDRGLKNGEVEYAHRGDLQNENVPVTEI 571

Query: 435 INYASHRFS 443
            +    +  
Sbjct: 572 ADKLIAKIK 580


>gi|146339967|ref|YP_001205015.1| threonyl-tRNA synthetase [Bradyrhizobium sp. ORS278]
 gi|146192773|emb|CAL76778.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Bradyrhizobium sp. ORS278]
          Length = 688

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 138/443 (31%), Gaps = 39/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W P G      + A +R       
Sbjct: 264 YLKQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHPKGWSIFQALIAYMRRRL-AGD 320

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M       D     +     P +      IF+ 
Sbjct: 321 YDEVNAPQILDKSLWETSGHWNWYRENMFAAQSAGDEAEDKRWFALKPMNCPGHVQIFKH 380

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + ++       +
Sbjct: 381 GLKSYRDLPMRLAEFGVVHRYEASGAMHGLMRVRGFTQDDAHVFCTEDQLAEECLKINDL 440

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                        + ++  + P     + E    A+     V       +  I +E    
Sbjct: 441 ILSTYSDFGFEGELTVKLSTRPEKRVGTDEMWDHAERVMATVLNEIKAQNNHIRTE---- 496

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   I     A Y    +     L D++  + +     ++      FG        
Sbjct: 497 --------INPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVDFNLPERFG-------- 537

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +  ADG     V +     G+M     ++   + G   +W         ++       
Sbjct: 538 AFYIDADGAKKAPVMVHRAICGSMERFIGILIEHYAGSFPLWLAPTQVVVTTIT------ 591

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  +++ A L + G     D   E+I  +     L   P  ++VG K      V +
Sbjct: 592 SEGDEYAKQVLAALRRAGLRAEIDLRNEKINYKVREHSLQKIPALLVVGKKEAETHSVSV 651

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +      +  M   + I      
Sbjct: 652 RRLGRDGQTVMPTADAIAALVDE 674


>gi|257125504|ref|YP_003163618.1| prolyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
 gi|257049443|gb|ACV38627.1| prolyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
          Length = 570

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 131/296 (44%), Positives = 178/296 (60%), Gaps = 7/296 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK FL   +E P++A+I SH+LMLR  MI+Q ++G+Y++LP G + L  +  I REE
Sbjct: 1   MRLSKAFLKTYKEAPKEAQIVSHQLMLRAFMINQLTRGVYTYLPFGYRVLKKIENITREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ A LW ESGR+ +YG E++RL DRN++    GPTHEEV+TD+ R 
Sbjct: 61  MDRAGAQELLMPVLQPASLWEESGRWFAYGPELMRLKDRNEREFSLGPTHEEVITDVVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LPF  YQIQ KFRDE+RPRFG+MR REF+MKD YSF LT E     Y  M  +
Sbjct: 121 SISSYKELPFNVYQIQTKFRDEMRPRFGLMRGREFVMKDGYSFHLTQESLDEEYLNMKDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--D 238
           Y RIF R+GL    + A++G IGGD SHEF+VLA++GE  +  S    D+    E     
Sbjct: 181 YSRIFERMGLNYRAVEADTGSIGGDASHEFMVLAESGEDDILYSDS-SDYAANVEKATSI 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG----IEVGHIFYF 290
            +   S    + +          + +   F ++P+ K V A      +E G  F  
Sbjct: 240 IELKESNEEKLPKELVETPNAKTIEDLANFLNIPKEKTVKAVMLKEILEDGEKFVL 295



 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 77/208 (37%), Positives = 118/208 (56%), Gaps = 3/208 (1%)

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSL 296
            + +      V      Y   +D+   K  D  P+ K V   ARGIEVGHIF  G KYS 
Sbjct: 364 ANKVDYHYVNVNLEDLAYDLVADIRTAKAGDLSPDGKGVLKIARGIEVGHIFKLGEKYSK 423

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            ++AT    +GK  +++MG YG+G  R+++A IE +HD  GIIWP ++AP+ + +I    
Sbjct: 424 ALNATVLDENGKQQFIKMGCYGMGMSRIISAAIEQNHDEYGIIWPKAIAPYHVDVIIANM 483

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D+   +  EK+Y  L++   +   DD  E+ G +F  ADL+GFPL+++VG K  +D  V
Sbjct: 484 KDETQVNIGEKLYNELNQNKIETVLDDRNERAGFKFKDADLIGFPLKIVVG-KGAADGIV 542

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E+K R TG   D+ +EEV+N+  +  + 
Sbjct: 543 EVKDRKTGESTDVKVEEVLNFVKNFMAE 570


>gi|255065704|ref|ZP_05317559.1| proline--tRNA ligase [Neisseria sicca ATCC 29256]
 gi|255050022|gb|EET45486.1| proline--tRNA ligase [Neisseria sicca ATCC 29256]
          Length = 570

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 123/273 (45%), Positives = 174/273 (63%), Gaps = 5/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E     
Sbjct: 181 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIELAPTL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            +    +  +   A         N K  DSL +
Sbjct: 240 PLKGERAAAQAELA----KVHTPNVKTIDSLVD 268



 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 7/230 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPEN--K 275
           F  K + DF               +     +     A      D+ N    D  P+   +
Sbjct: 341 FTGKVYADFATEKGVDWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGR 400

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D 
Sbjct: 401 LKLARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDE 460

Query: 336 KGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           KGIIW  ++APF++ ++ +        RDA +KIYA L   G DV  DD  E+ G     
Sbjct: 461 KGIIWTKAMAPFEVVIVPMNYKKSDAVRDAADKIYAELLAAGADVLLDDRDERAGVLLND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++LLG P ++++G + + +  VE   R     + +SL E+         +
Sbjct: 521 SELLGIPHRIVIGDRALKEGNVEYAERRDNQAQTVSLNEIAGKVLAALKD 570


>gi|228940907|ref|ZP_04103466.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228973836|ref|ZP_04134412.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980425|ref|ZP_04140735.1| Prolyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228779245|gb|EEM27502.1| Prolyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228785861|gb|EEM33864.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818743|gb|EEM64809.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326941586|gb|AEA17482.1| prolyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 566

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 123/267 (46%), Positives = 168/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
           D  + +   E+     A       E++
Sbjct: 240 DTYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQIYITNILK 566


>gi|194364305|ref|YP_002026915.1| prolyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
 gi|226701341|sp|B4SJ64|SYP_STRM5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194347109|gb|ACF50232.1| prolyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
          Length = 567

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 115/223 (51%), Positives = 150/223 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V  I+REE
Sbjct: 1   MRLSQFHLHTTKETPSDAELTSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E  +PT+Q  +LW ++GR+  +G ++L++ DR D+   Y PT EE   D  RS
Sbjct: 61  MDRAGAVEFQIPTIQPKELWEQTGRWQKFGPQLLKIKDRKDQTFCYSPTAEEAACDFARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF L  E     Y  M  +
Sbjct: 121 ELSSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFLMKDAYSFHLHDECLVREYENMKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  
Sbjct: 181 YSRIFTRLGLDFRMVQADSGAIGGDASQEFHVIADSGEDALVF 223



 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 94/184 (51%), Gaps = 2/184 (1%)

Query: 258 ATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             +D+ N +  D +L   +   ARGIEVGH+F  G  Y+  + AT    +GK   + MG 
Sbjct: 383 EVADIRNVRAGDRALDGGELKIARGIEVGHVFQLGRTYARALDATVLDENGKAAVMAMGC 442

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           YGIG  RVVAA IE +HD  GIIWPD++AP+++ +  I    D    DA   +   L   
Sbjct: 443 YGIGISRVVAAAIEQNHDDAGIIWPDAMAPWQVVVCVINPKGDAAVADAATNLLQELRDA 502

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G D   DD G + G+ FA  +L+G P +V+V  + ++    E + R     E +    ++
Sbjct: 503 GLDAALDDRGLRPGAMFADMELIGIPHRVVVSERGLAAGTYEYRSRRASEAESLDKATLL 562

Query: 436 NYAS 439
               
Sbjct: 563 QRLQ 566


>gi|189424968|ref|YP_001952145.1| prolyl-tRNA synthetase [Geobacter lovleyi SZ]
 gi|226701293|sp|B3E1X5|SYP_GEOLS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189421227|gb|ACD95625.1| prolyl-tRNA synthetase [Geobacter lovleyi SZ]
          Length = 576

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 127/286 (44%), Positives = 179/286 (62%), Gaps = 2/286 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +++F+P L+E P DAE+ SH+LM+R+GMI + + GIY+++PLG +++     I+REE
Sbjct: 1   MRYTQFFIPTLKETPSDAEVVSHQLMMRSGMIRKIAAGIYTYMPLGLRSIRKFEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW+ES R+  YGKE+LR  DR D     GPTHEE++TDI R 
Sbjct: 61  MNRAGAIELLMPGVQPAELWIESKRWAQYGKELLRFKDRKDNEFCMGPTHEEIITDIARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR +P  FYQIQ KFRDE+RPRFG+MR REF+MKDAYSFD+    +  SY+KM+ +
Sbjct: 121 EVKSYRQMPVNFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDVDSSAADLSYDKMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL    + A++G IGG  SHEF+VLA +GE  +        +    E  +  
Sbjct: 181 YNRIFERCGLNFRAVEADTGSIGGSASHEFMVLASSGEDAIVSCNACR-YAANVEKAEGV 239

Query: 241 DIISLNSIVEQWTAPYAA-TSDVHNEKLFDSLPENKRVSARGIEVG 285
                 +  +  T  +      +     F  LP++  V A  +  G
Sbjct: 240 RQQQGGAGQQALTKVHTPDKKTIAEVAEFLGLPQSGTVKALVLSNG 285



 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 73/190 (38%), Positives = 104/190 (54%), Gaps = 4/190 (2%)

Query: 260 SDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           +D+      D  P          RGIEVGH+F  GTKYS  M+AT+   DGK+  + MG 
Sbjct: 382 ADIRLIGAGDPCPRCSGGTLEVWRGIEVGHVFKLGTKYSSSMNATYLDKDGKEQIIFMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKV 375
           YGIG  R VAA IE +HD  G+IWP  +APF  S++ I A  D+    A + I+ RL   
Sbjct: 442 YGIGIGRTVAASIEQNHDENGVIWPLPLAPFHCSVVAINAQKDEAVMAAAQDIHDRLEAA 501

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G +F   DL+G PL+++VG K +++  VE K R  G  + ++ E+ I
Sbjct: 502 GVEVLLDDRDERPGVKFKDHDLIGIPLRIVVGGKNLAEGNVEFKQRAGGEMQLLAPEQAI 561

Query: 436 NYASHRFSNN 445
                +   +
Sbjct: 562 ESVIAKVRES 571


>gi|225627544|ref|ZP_03785581.1| threonyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|225617549|gb|EEH14594.1| threonyl-tRNA synthetase [Brucella ceti str. Cudo]
          Length = 693

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 152/445 (34%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 268 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 325

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 326 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 385

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 386 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLRIN 445

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 446 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 492

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 493 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 543

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 544 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 597

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 598 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 655

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 656 NMRRLGSRDQESMTLDEAIARLCEE 680


>gi|257067150|ref|YP_003153406.1| threonyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
 gi|256799030|gb|ACV29685.1| threonyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
          Length = 640

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 147/442 (33%), Gaps = 42/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  + +E   RD      ++ L T   H+   G   + P G   ++ +     +  N  G
Sbjct: 232 YEELQKEIEKRDHRKIGREMNLFT--FHEEGPGFPFFHPNGMILMNELLGWWTDVLNENG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + DLW  SG +D Y + M      + +A    P +       + S+  SY
Sbjct: 290 YGEIKTPLILNEDLWHRSGHWDHYKENM-YFTKIDGEAYAIKPMNCPGSVLTYASNQHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R EL     G+ R R F   DA+ + L  +  +  Y         +
Sbjct: 349 RDLPIRLAEYGQVHRHELSGTLHGLFRVRTFTQDDAHVYCLPSQIKEEVYRM-IDLADLL 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K       + P                           DF         ++   
Sbjct: 408 YSTFGFKYTI-ELSTRP-----------------DDFMGDIKDWDFAEDQLKKALEERGI 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D H   L D+     +     ++    F     +      T+  
Sbjct: 450 EYEINPGDGAFYGPKIDFH---LLDAAKREWQCGTIQLD----FQLPQNFD----LTYID 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G+      +    +G++     V+     G+  +W           + I        D
Sbjct: 499 ENGEKQRPVMLHRALLGSIERFIGVLTEHFAGRFPLW------LNPQQVEIIPVSDKFID 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            CE +  ++ + G  V  D   E +G +   A L+     ++VG K  +  K+ +++R  
Sbjct: 553 YCEDLKEKIKEAGFRVNIDYRSEGVGYKIRQAQLMRTNYMLVVGEKEETSGKLTVRNRDG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
               D+S++E I   S    + 
Sbjct: 613 EETADVSVDEFIEKISKERDSR 634


>gi|189466356|ref|ZP_03015141.1| hypothetical protein BACINT_02731 [Bacteroides intestinalis DSM
           17393]
 gi|189434620|gb|EDV03605.1| hypothetical protein BACINT_02731 [Bacteroides intestinalis DSM
           17393]
          Length = 646

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 74/446 (16%), Positives = 145/446 (32%), Gaps = 40/446 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVVLEEAKKRDHRKIGREMDLFM-FSDTVGKGLPMWLPKGTALRLRLQEFLRRIQARY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++  
Sbjct: 289 DYQEVITPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +   ++  +                  D    + +   D           +  +
Sbjct: 408 SIVFRSMEFANVEAQISLR--------------DKVNREKYIGSDENWERAEQAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLTARIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFDL 502

Query: 301 TFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            + GAD + H   M          R VA +IE +     +                    
Sbjct: 503 EYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLWLTPEQVAILPI-------S 555

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D  +++   L +       D+  E+IG +    +L   P  +IVG K   + +V +
Sbjct: 556 EKFNDYAQEVKKFLKQYDIRAIVDERNEKIGRKIRDNELKRIPYMLIVGEKEAENREVSV 615

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           + +  G +  M  EE     +    N
Sbjct: 616 RKQGEGDKGTMKFEEFAKILNEEVQN 641


>gi|330466868|ref|YP_004404611.1| threonyl-tRNA synthetase [Verrucosispora maris AB-18-032]
 gi|328809839|gb|AEB44011.1| threonyl-tRNA synthetase [Verrucosispora maris AB-18-032]
          Length = 666

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 143/443 (32%), Gaps = 36/443 (8%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E  R D       L L +    +   G+  + P G      +    R +  +
Sbjct: 250 KAYLKLLEEAARRDHRKLGVDLDLFS-FPDELGSGLAVFHPKGGIIRREMENYSRLKHEQ 308

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   ++ P +    L+  SG  D Y   M    +    +    P +  +   IFRS  +
Sbjct: 309 AGYEFVNTPHITKGHLYEVSGHLDWYADGMFPPMEVEGASYYLKPMNCPMHDLIFRSRGR 368

Query: 124 SYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R R     DA+ F    + +      +    L
Sbjct: 369 SYRELPLRMFEFGTVYRYEKSGVVHGLTRVRGMTQDDAHIFCTEEQMAGEL-KSLLAFVL 427

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    GL    +   +                        + +  +    +  +  ++ 
Sbjct: 428 ELLRDYGLDDFYLELSTRNPEKS----------------VGTDENWERATEALRSAAEES 471

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y       + ++ D++    ++S   ++    F    +++L   A  
Sbjct: 472 GLTLVPDPGGAAFYGPKI---SVQVKDAIGRTWQMSTIQVD----FNLPERFNLEYQAA- 523

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +   V +     G++     V+    +     +P  +AP ++  I I+       
Sbjct: 524 --DGTRQRPVMIHRALFGSIERFFGVLT---EHYAGAFPAWLAPVQVVGIPIRDDHA--- 575

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D      A L   G     D   E++  +   A     P  VI G   V+   V  ++R 
Sbjct: 576 DYLHGFVAALRAEGIRAQVDSGDERMQKKIRNAQQQKIPFMVIAGDDDVAAGTVSFRYRD 635

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
              R  + L E + +     +  
Sbjct: 636 GSQRNGVPLAEAVTHVLDVVNTR 658


>gi|119358269|ref|YP_912913.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355618|gb|ABL66489.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 675

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/444 (14%), Positives = 153/444 (34%), Gaps = 39/444 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      +L L   +  +   G+  WLP G    + +   ++EEQ + G + 
Sbjct: 260 RVEEAKRRDHRKLGAELELFM-LSPEIGSGLPVWLPKGAIIRNELETFLKEEQRKRGYLP 318

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-----AMIYGPTHEEVMTDIFRSHIK 123
           +  P + + +L+  SG Y  Y          +D+       +  P +      I+   ++
Sbjct: 319 VYTPHIGNIELYKRSGHYPYYSDSQFPPLTYHDENGKQEQYLLKPMNCPHHHLIYNVKLR 378

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +    +R E      G++R+R F   D++ +    +              
Sbjct: 379 SYRDLPIRLAEFGTVYRHEQSGELNGLVRARGFTQDDSHIYCRPDQLVDE-ICNAIDLTQ 437

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  LG   +  R                + D    + +     +      + T+  + 
Sbjct: 438 HVFATLGFSDVQTRLS--------------MHDPLNQEKYGGTPEVWEQAEKDVTEAANR 483

Query: 243 ISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           + +N ++     + Y    D     + D++    ++    ++                 +
Sbjct: 484 MGINYVIGIGEASFYGPKIDFI---VRDAIGRKWQLGTVQVDYVMP--------ERFDLS 532

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G+D + H   +              I    +     +P  +AP +  ++ +    +  
Sbjct: 533 YIGSDSQKHRPIVIHRAPFGSMER--FIGVLIEHTAGNFPLWLAPVQAIIMPLG---EEI 587

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               + I+ +L   G     D   E+IG +   A++   P  +I+G K +   ++ ++  
Sbjct: 588 HAYAKSIHEKLLHSGIRAELDLRNEKIGKKIREAEIGKLPYMIIIGQKELESGQLSLRRH 647

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            TG     + + +I+      +  
Sbjct: 648 RTGDEGLFTTDSLIDKLKKEIAAK 671


>gi|311894878|dbj|BAJ27286.1| putative threonyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 659

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/442 (15%), Positives = 136/442 (30%), Gaps = 38/442 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD     ++L L + +  Q   G+  + P G      +    R+     G   +
Sbjct: 253 LEEAAKRDHRKLGNELDLFS-IPEQIGSGLAVFHPKGGIIRRTMEDYSRKRHEEEGYEFV 311

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             P      L+  SG  D Y   M               P +  +   IF +  +SYR L
Sbjct: 312 YTPHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYREL 371

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P   ++    +R E      G+ R+R F   DA+ +    + +    ++     L +   
Sbjct: 372 PLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTREQMADEL-DRTLTFVLDLLRD 430

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            GL    +   +                    +   S D  +       +  +       
Sbjct: 431 YGLNDFYLELST----------------KDPEKFVGSDDAWEEATAVLASVAEKQGLPLV 474

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                 A Y       + +  D++    ++S   ++    F    ++       +  ADG
Sbjct: 475 PDPGGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FNLPERFD----LEYTSADG 523

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                  +     G++    AV+    +      P  +AP  ++ I I            
Sbjct: 524 SRQRPVMIHRALFGSIERFFAVLL---EHYAGAMPPWLAPVTVTGIPIT---DEHVPYLL 577

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + A L K G  V  D   +++  +   A     P  +I G+  V    V  ++R    +
Sbjct: 578 DVAAELKKHGIRVEVDTSDDRMQKKIRNAQKTKVPFMLIAGNDDVEAGAVSFRYRSGEQK 637

Query: 427 EDMSLEEVINYASHRFSNNRPV 448
             +  +E I        +   V
Sbjct: 638 NGVPKDEAIAEIVEAVRSRVQV 659


>gi|297581262|ref|ZP_06943186.1| prolyl-tRNA synthetase [Vibrio cholerae RC385]
 gi|297534578|gb|EFH73415.1| prolyl-tRNA synthetase [Vibrio cholerae RC385]
          Length = 571

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 115/237 (48%), Positives = 154/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  GT YS  M+     ++GK+  ++M
Sbjct: 382 GKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +     +  + A EK+YA L+
Sbjct: 442 GCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E K+R +G +E +++  
Sbjct: 502 AAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFEYKNRRSGEKEAVAMAS 561

Query: 434 VINYASHRFS 443
           +I++   + +
Sbjct: 562 IIDFIQTKLA 571


>gi|119717421|ref|YP_924386.1| prolyl-tRNA synthetase [Nocardioides sp. JS614]
 gi|152112937|sp|A1SLL4|SYP_NOCSJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119538082|gb|ABL82699.1| prolyl-tRNA synthetase [Nocardioides sp. JS614]
          Length = 589

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 106/280 (37%), Positives = 150/280 (53%), Gaps = 5/280 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F+  L+E+P DAE+ SH+L++R G I + + GIY+WLPLG + L  +  +IREE
Sbjct: 3   MRMSSLFVRTLREDPADAEVPSHRLLVRAGYIRRAAPGIYTWLPLGLRVLRKIENVIREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA EM  P L   + +  + R+  YG  + RL DR     + GPTHEE+ T + + 
Sbjct: 63  MDAIGAQEMLFPALLPREPYEATNRWTEYGDGIFRLQDRKGADYLLGPTHEEMFTLVVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY K   +
Sbjct: 123 LYSSYKDLPLSIYQIQTKYRDEARPRAGLLRGREFVMKDSYSFDVDDAGLDVSYQKHRDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF RLG + + + A SG +GG  S EF+  A  GE   +      D+    E     
Sbjct: 183 YVRIFDRLGFEYVIVEAMSGAMGGSKSEEFLAKASVGE-DTYVRCTLCDYAANVEAVHSP 241

Query: 241 DIISLNSI----VEQWTAPYAATSDVHNEKLFDSLPENKR 276
            I  +             P   T +     L +  P   R
Sbjct: 242 PIPPVPYDDAPAAHAEQTPDTPTIETLVAHLNERFPREDR 281



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/188 (34%), Positives = 95/188 (50%), Gaps = 6/188 (3%)

Query: 260 SDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +V   +  D  P        +ARGIE+GHIF  G KY+  +        GK   V MGS
Sbjct: 403 IEVAEVRDGDPCPRGDGGTLETARGIEMGHIFQLGRKYADALDLKVLDEQGKLVTVTMGS 462

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R VAA+ E +HD  G+ WP  VAP  + ++     D+    A E+I   L K G
Sbjct: 463 YGIGPSRAVAAIAEGTHDELGLAWPREVAPADVHIVATG-KDEHVFAAAERIAHELDKQG 521

Query: 377 CDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            +V +DD      G +F  A+L+G P  V+VG K ++   +E+K R TG R+D+  + ++
Sbjct: 522 VEVLYDDRPKVSPGVKFKDAELIGVPTIVVVG-KGLAAGTIEVKDRRTGQRQDVPADHLV 580

Query: 436 NYASHRFS 443
           +       
Sbjct: 581 DRVIAIVR 588


>gi|229525492|ref|ZP_04414897.1| prolyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229339073|gb|EEO04090.1| prolyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|327483617|gb|AEA78024.1| Prolyl-tRNA synthetase Bacterial type [Vibrio cholerae LMA3894-4]
          Length = 571

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 115/237 (48%), Positives = 154/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  GT YS  M+     ++GK+  ++M
Sbjct: 382 GKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +     +  + A EK+YA L+
Sbjct: 442 GCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E K+R +G +E +++  
Sbjct: 502 AAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFEYKNRRSGEKEAVAMAS 561

Query: 434 VINYASHRFS 443
           +I++   + +
Sbjct: 562 IIDFIQAKLA 571


>gi|229152018|ref|ZP_04280213.1| Prolyl-tRNA synthetase [Bacillus cereus m1550]
 gi|228631367|gb|EEK88001.1| Prolyl-tRNA synthetase [Bacillus cereus m1550]
          Length = 566

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALKKVATPDQKAIEEV 266



 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 108/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++++EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVNVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|311747151|ref|ZP_07720936.1| threonine--tRNA ligase [Algoriphagus sp. PR1]
 gi|126578860|gb|EAZ83024.1| threonine--tRNA ligase [Algoriphagus sp. PR1]
          Length = 649

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 160/448 (35%), Gaps = 38/448 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L T    +   G+  WLP G    + +   +++ Q+
Sbjct: 231 LKEYLEMIEEAKKRDHRKLGRELELFT-FSEKVGMGLPLWLPKGTLLRERLVNFLKKAQD 289

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
           + G  ++  P +    L+  SG Y+ YGK+  +        +  +  P +     +I++ 
Sbjct: 290 KAGYQQVITPHIGHKVLYETSGHYEKYGKDSFQPITTPHEGEEFLLKPMNCPHHCEIYKH 349

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SY+ LP  + +    +R E      G+ R R F   DA+ F   P+  K  + K+  
Sbjct: 350 KPHSYKELPIRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCR-PDQVKEEFIKVID 408

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  LG      +                  D    + +   D       S   + 
Sbjct: 409 LVLYVFKALGFDDFTAQISLR--------------DPENPEKYIGGDEAWDKAESAIIEA 454

Query: 240 DDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                L+++ E    A Y    D     + D+L    ++    ++               
Sbjct: 455 AAEKGLDTVTELGEAAFYGPKLDFM---VKDALGRKWQLGTIQVDYQLP--------ERF 503

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + G+D + H    +     G++    AV+     G   +W           INI   
Sbjct: 504 QLEYIGSDNQKHRPVMIHRAPFGSLERFVAVLIEHCAGNFPLW------LSPEQINILPI 557

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D  E+I   L + G     D+  E+IG +   +++   P  +IVG K   + K+ 
Sbjct: 558 SEKFVDYAEEIKGILDEAGISGSIDNRDEKIGRKIRDSEVKKVPFMLIVGEKEKEERKLS 617

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++    G   + S EE INY     S +
Sbjct: 618 VRKHGQGDLGNFSPEEFINYFEGIISES 645


>gi|15677205|ref|NP_274358.1| prolyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|81857571|sp|Q9JZ14|SYP_NEIMB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|7226583|gb|AAF41714.1| prolyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|325134423|gb|EGC57068.1| prolyl-tRNA synthetase [Neisseria meningitidis M13399]
 gi|325200038|gb|ADY95493.1| prolyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 570

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 122/273 (44%), Positives = 171/273 (62%), Gaps = 5/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E     
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIELAPTL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            +    +  +             N K  DSL +
Sbjct: 240 PLKGERAAAQAELV----KVHTPNVKTIDSLVD 268



 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPEN--K 275
           F  K + DF               +     +     A      D+ N    D  P+   +
Sbjct: 341 FAGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGR 400

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D 
Sbjct: 401 LKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDE 460

Query: 336 KGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     
Sbjct: 461 KGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAGVLLND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 521 SELLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIVARVTASLN 569


>gi|260911583|ref|ZP_05918168.1| threonine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634289|gb|EEX52394.1| threonine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 654

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 152/445 (34%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L      +  KG+  WLP G +    +  ++R+ Q R 
Sbjct: 232 EYLVMLEEAKKRDHRKIGKEMELFM-FSERVGKGLPIWLPKGTELRLRLQDMLRKIQKRF 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G  E+  P + S +L+V SG Y  YGK+  +       D+  +  P +     ++F    
Sbjct: 291 GYQEVITPHIGSKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEVFAWKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    +R E      G+ R R F   DA+ F    +        M    
Sbjct: 351 RSYKDLPLRIAEFGTVYRYEKSGELHGLTRVRSFTQDDAHIFCRPEQVKNEFLRVM---- 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                        ++A       D     I L D   T  +   D +         D   
Sbjct: 407 -----------DIIQAVFKIFQFDNFEAQISLRDPNNTTKYIGSDEVWEESEQAIIDACK 455

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L++ +     A Y    D     + D++    ++    ++                 
Sbjct: 456 EKGLDAKIAYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFKL 504

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D        +     G+M   +AV+     G   +W           + I    +
Sbjct: 505 EYTAEDNTKKTPVMVHRAPFGSMERFSAVLIEHTTGHFPLW------LIPDQVAILPISE 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  +++   L  VG     D   E+IG +    ++   P  VIVG K   +  V ++
Sbjct: 559 KFNDYAQRVAKYLDSVGVRATLDVRNEKIGRKIRDNEIKRVPYMVIVGEKEAEEGLVSMR 618

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M++EE     +   + 
Sbjct: 619 KQGGGEQATMTMEEFAKRINDEVAT 643


>gi|222099131|ref|YP_002533699.1| Prolyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
 gi|254782923|sp|B9KBD7|SYP_THENN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|221571521|gb|ACM22333.1| Prolyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
          Length = 577

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 108/227 (47%), Positives = 154/227 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR  + + P L+E P D E  SH+ +LR G I + + GIY++LPLG++ L  +  I+REE
Sbjct: 1   MRMKQLYAPTLKETPSDVETVSHEYLLRGGFIRKVAAGIYTYLPLGRRVLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P LQ A+LW  SGR+D YG EM++L DR+++    GPTHEE++TD+ ++
Sbjct: 61  MNRIGAQEILMPILQPAELWKRSGRWDDYGPEMMKLKDRHERDFTLGPTHEEIVTDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQ+  K+RDE+RPRFG++R+REF+MKDAYSF  + E    +Y     +
Sbjct: 121 ELRSYRQLPLVVYQVANKYRDEIRPRFGLLRAREFIMKDAYSFHSSWESLDETYELFKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RI  RLG+K + + AE+G IGG+ SHEF+V A  GET V   +  
Sbjct: 181 YSRIMERLGVKYMVIEAETGAIGGNASHEFVVPAKIGETNVLYCEKC 227



 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 10/197 (5%)

Query: 258 ATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+      D  P       + +GIE+GHIF  GTKYS  M A F   +G+     MG
Sbjct: 378 EWCDLRTVVEGDPCPVCGEPLRATKGIELGHIFKLGTKYSEAMEAYFMDENGEMKPFIMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG G  R +AAV+E  HD  G+IWP S+AP+ + +  +  +D   +   E+IY  L + 
Sbjct: 438 CYGWGVSRTMAAVVEHFHDENGMIWPLSIAPYTVIVDILNMNDPDQKRVGEEIYRALLEK 497

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE--- 432
           G +V  DD     G +F  ADL+GFP+++ VG + + D  +E+K R +     +S++   
Sbjct: 498 GEEVVLDDREVSPGFKFKDADLIGFPIRINVG-RSLKDGVIELKKRYSKELVKVSIQNGL 556

Query: 433 ----EVINYASHRFSNN 445
               E +N     +   
Sbjct: 557 GSLFEALNRMKAEYDPR 573


>gi|77747502|ref|NP_297735.2| prolyl-tRNA synthetase [Xylella fastidiosa 9a5c]
 gi|114152281|sp|Q9PG57|SYP_XYLFA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 564

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 113/223 (50%), Positives = 150/223 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+R+E
Sbjct: 1   MRLSEFHLHTTKEIPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM +PT+Q  +LW ES R++ +G ++L++ DR      Y PT EE +TD  R 
Sbjct: 61  MNRAGAVEMLLPTIQPRELWEESERWEKFGNQLLKIKDRKQAEYCYSPTAEEAVTDYVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L        Y  M  +
Sbjct: 121 ELTSYKQLPVNLYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLNDADLVREYENMRAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE  +  
Sbjct: 181 YTRIFTRLGLEFRAVQADSGAIGGDASQEFHVIADSGEDVLAF 223



 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/184 (35%), Positives = 96/184 (52%), Gaps = 2/184 (1%)

Query: 258 ATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             +D+ N    D ++   K   ARGIEVGH+F  G KY+  M AT     GK   + MG 
Sbjct: 380 VVADIRNVIEGDRAVDGGKICIARGIEVGHVFQLGRKYAEAMKATVLDEYGKAVTMTMGC 439

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+VAA IE +HD  GIIWP S+AP+++++  I    D V   A E + A L   
Sbjct: 440 YGIGVSRIVAAAIEQNHDVAGIIWPASIAPWQVAVCVINPKKDPVITAAAEVLLAELQSA 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D   DD G + G  FA  +L+G P +++V  + ++    E + R T + E++    ++
Sbjct: 500 DVDTVLDDRGLRPGVMFADMELIGIPHRIVVSERGLAAGTYEYRARHTAMVENLDKTTLL 559

Query: 436 NYAS 439
               
Sbjct: 560 MRIK 563


>gi|282896497|ref|ZP_06304517.1| Prolyl-tRNA synthetase [Raphidiopsis brookii D9]
 gi|281198603|gb|EFA73484.1| Prolyl-tRNA synthetase [Raphidiopsis brookii D9]
          Length = 604

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 126/294 (42%), Positives = 169/294 (57%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL+LR G I +   G+Y++LPL  + L  ++ IIREE
Sbjct: 2   MRLSQKLFVTLRDDPADAEIPSHKLLLRAGYIRRIGSGVYAYLPLMWRVLQKISQIIREE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 62  MNATGAEECLLPQLQPAELWKESGRWDTYTKAEGIMFSLIDRREQHLGLGPTHEEVITTI 121

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF    E  K +Y  M
Sbjct: 122 GRDMIRSYRQLPVHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTDEESLKKTYQDM 181

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           + +Y  I  R GL    + A+SG IGG  S EF+VLAD GE +V  ++D        +  
Sbjct: 182 YKAYSNILRRCGLAFRAVEADSGAIGGSGSTEFMVLADAGEDEVLYTQDGKYAANVEKAV 241

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                   ++       P AAT  +  EK+ D L  +     + +    ++  G
Sbjct: 242 SLPADAEPSNFKTCEKVPTAATETI--EKVCDYLKCSPTQVVKNVLYQTVYDQG 293



 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/202 (35%), Positives = 109/202 (53%), Gaps = 5/202 (2%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
           +  EQ+  P     D+   K  D     P     +ARGIE GHIF  GTKYSL M AT+ 
Sbjct: 401 NWQEQFKLPE-LVVDIRKAKPGDRSVHDPSQTLETARGIEAGHIFQLGTKYSLAMGATYT 459

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              G++  + MG YG+G  R+  + +E S+DG GIIWP ++AP+   +      D    +
Sbjct: 460 NEQGEEKPLVMGCYGVGVSRLAQSAVEQSYDGDGIIWPVAIAPYHAIISIPNIKDSQQVE 519

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EKIY  L+KVG +   DD  E+ G +F  ADL+G P +++ G + ++  KVE+  R T
Sbjct: 520 IAEKIYTELNKVGIETLLDDRNERAGVKFKDADLIGIPYRIVTG-RSITHGKVEVVTRAT 578

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              +++++E+++N      S  
Sbjct: 579 RESKEIAIEDLVNTLESWISQR 600


>gi|148560208|ref|YP_001259002.1| threonyl-tRNA synthetase [Brucella ovis ATCC 25840]
 gi|148371465|gb|ABQ61444.1| threonyl-tRNA synthetase [Brucella ovis ATCC 25840]
          Length = 693

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 152/445 (34%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 268 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWKMFQNLVSYMRRRLDS 325

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 326 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 385

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 386 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLRIN 445

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 446 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 492

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 493 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 543

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 544 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 597

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 598 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 655

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 656 NMRRLGSRDQESMTLDEAIARLCEE 680


>gi|116512847|ref|YP_811754.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Lactococcus
           lactis subsp. cremoris SK11]
 gi|122939966|sp|Q02WN1|SYT_LACLS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116108501|gb|ABJ73641.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 646

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 166/441 (37%), Gaps = 35/441 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L + +E   RD      +L L      +   G   WLP G      +   + +++ + G 
Sbjct: 232 LKLREEAKERDHRKLGRELDLF-FNDAELGAGTAYWLPAGATIRRIIERFVVDQEVKNGY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSY 125
             +  P + + + + +SG +  Y ++M    D  D + M   P +      I++ H+ SY
Sbjct: 291 QHVITPVMMNLNTYKQSGHWQHYHEDMYPPMDMGDGEEMELRPMNCPSHIAIYKHHVHSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +  +  R E      G+ R RE  + D ++F +  +  +  ++K+    + +
Sbjct: 351 RELPIRIAEFGMMHRYEKSGALSGLQRVREMTLNDGHTFVMLEQVQEE-FSKILQLIMDM 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDII 243
           +   G+     R                  D  +T  +   D M     +      DD+ 
Sbjct: 410 YRDFGINDYSFRLS--------------YRDPKDTVKYFPDDEMWEKSQAMLKATMDDMK 455

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    D+   ++  +L   + +S   ++  +              ++ 
Sbjct: 456 LDYVEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLDFLNP--------ENFDISYV 504

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           GADG+ H   M     G +  +   I    +     +P  +AP + ++I +   +++  D
Sbjct: 505 GADGEKHRPVMIHR--GVISTLERFIAYLIEVYKGAFPTWLAPTQATIIPVN--NEIHAD 560

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              KI   L   G  V  D+  E++G +   +     P Q+++G +  ++  V I+   +
Sbjct: 561 YAWKIQRELQDKGFRVVVDEANEKMGWKIRQSQTHKIPYQIVIGDQEQANGTVNIRRYGS 620

Query: 424 GIREDMSLEEVINYASHRFSN 444
              E +  E+ I   S   +N
Sbjct: 621 KETEVIPFEDFIEKISADVAN 641


>gi|302866733|ref|YP_003835370.1| threonyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|302569592|gb|ADL45794.1| threonyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
          Length = 672

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 69/444 (15%), Positives = 131/444 (29%), Gaps = 35/444 (7%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E  R D       L L +    +   G+  + P G      +   +R     
Sbjct: 250 KAYLKLLEEAARRDHRKLGADLDLFS-FPDEIGSGLPVFHPKGGVLKRVMEDYVRARHVE 308

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +    L+  SG    Y   M    +           +  +   I+RS  +
Sbjct: 309 EGFDYVGTPHISKEGLFHTSGHLPYYKDTMFPPMEMEGSDYYLKAMNCPMHNLIYRSRGR 368

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R R F   D++S+    +        +    L
Sbjct: 369 SYRQLPIRLFEFGTVYRYEKSGVIHGLTRVRGFTQDDSHSYCTREQAPSE-IKHLLGFVL 427

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G+    +   +               ++   +   S                + 
Sbjct: 428 SLLRDFGIDDFYLELSTRD-------------ESKPDKFVGSDSDWATATAVLEQCGLET 474

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y       + +  D++    ++S    +      FG          +
Sbjct: 475 GLELVPDPGGAAFYGPKI---SVQAKDAIGRTWQMSTIQYDFNQPKGFG--------LEY 523

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + ADG       +     G++     V+   + G    W   V    I +          
Sbjct: 524 QAADGTRQQPVMIHCAKFGSIERFIGVLTEHYAGAFPAWLAPVQVVGIPI------RDEH 577

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D      A L + G     D   E++  +   A     P  VI G   V+   V  ++R
Sbjct: 578 GDYLVDFAATLRRHGIRAEVDLGDERMQKKIRNAQQQKIPFMVIAGDDDVAAGTVSFRYR 637

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
               R  + ++E + +      + 
Sbjct: 638 DGSQRNGVPVDEAVAHVREVVESR 661


>gi|58337807|ref|YP_194392.1| threonyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227904456|ref|ZP_04022261.1| theronyl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
 gi|73919799|sp|Q5FIW3|SYT_LACAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|58255124|gb|AAV43361.1| theronyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227867831|gb|EEJ75252.1| theronyl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
          Length = 644

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 153/434 (35%), Gaps = 36/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      V   I + +   G   +  P L
Sbjct: 239 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYKHVYTPVL 296

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y  +M    D  D  M    P +      I++ HI+SYR+LP    
Sbjct: 297 MNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSYRDLPLRVA 356

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++    +  
Sbjct: 357 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVELDQVQSE-FAKILKLIMDVYRDFDITD 415

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 416 YYFRLS-------------YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGE 462

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G DG++H  
Sbjct: 463 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLTYVGKDGEEHRP 511

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G M    A +   + G    W        +    I  +++   +  EK+   
Sbjct: 512 VMVHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PVQAEIIPVNNEAHGEYAEKVRQE 566

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+K G  V  DD  E++G +   +     P  +++G + + +  V ++   T      SL
Sbjct: 567 LAKRGFRVEVDDRNEKMGYKIRESQTQKVPYTLVLGDEEMKNGSVNVRRYGTDEEISKSL 626

Query: 432 EEVINYASHRFSNN 445
           ++ IN       + 
Sbjct: 627 DDFINEIDADVKSY 640


>gi|254225105|ref|ZP_04918719.1| prolyl-tRNA synthetase [Vibrio cholerae V51]
 gi|125622492|gb|EAZ50812.1| prolyl-tRNA synthetase [Vibrio cholerae V51]
          Length = 571

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 115/237 (48%), Positives = 154/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  GT YS  M+     ++GK+  ++M
Sbjct: 382 GKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +     +  + A EK+YA L+
Sbjct: 442 GCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E K+R +G +E +++  
Sbjct: 502 AAGIEVLFDDRKERPGVMFSDMELIGVPHTLIIGDRSMDEGHFEYKNRRSGEKEAVAMAS 561

Query: 434 VINYASHRFS 443
           +I++   + +
Sbjct: 562 IIDFIHAKLA 571


>gi|225076521|ref|ZP_03719720.1| hypothetical protein NEIFLAOT_01569 [Neisseria flavescens
           NRL30031/H210]
 gi|224952200|gb|EEG33409.1| hypothetical protein NEIFLAOT_01569 [Neisseria flavescens
           NRL30031/H210]
          Length = 570

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  I+REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 YCRIFARLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 234



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 7/226 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPE--NKRVS 278
           K + DF               +     +     A      D+ N    D  P+   +   
Sbjct: 344 KVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVIEGDISPDEQGRLKL 403

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 404 ARGIEVGHVFQLRNKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 463

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +W  ++APF++ ++ +     +  R+A +KIYA L   G DV  DD  E+ G     ++L
Sbjct: 464 VWTKAMAPFEVVIVPMNYKKSEAVREAADKIYAELLAAGADVLLDDRDERAGVLLNDSEL 523

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG P ++++G + + +  VE   R     + +++ EV+       +
Sbjct: 524 LGIPHRIVIGDRALKEGNVEYAERRDNQAQAVAISEVVAKVLAALN 569


>gi|212212292|ref|YP_002303228.1| threonyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
 gi|212010702|gb|ACJ18083.1| threonyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
          Length = 660

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 147/447 (32%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD  + + K+ L        S G   W P G   +  +   IR  
Sbjct: 235 KALKAYLYRLEEAEKRDHRLLAKKMDLF--HFQPESPGNVFWHPNGWSIILQMREYIRHI 292

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+  P L  A LW +SG  + +G ++  L     +  +  P        IF  
Sbjct: 293 THKYGYQEVHTPQLIDASLWDKSGHLEKFGDDIFSLPLEP-QQYVIKPMSCPAHVQIFNQ 351

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP  + +     R+E      G+MR R F+  DA+ F    +      +    
Sbjct: 352 GVKSYRDLPLRYAEFGACHRNEPSGTLHGLMRLRGFVQDDAHIFCTEDQIQSE-VSAFID 410

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G   +  +  + P     S E    A+    +    K      +P E    
Sbjct: 411 QLHEVYADFGFTEVIHKLSTRPEKRVGSDEVWTKAEQALAEALNRKGVEWDILPGE---- 466

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                         A Y    +     L D L    +     ++       G        
Sbjct: 467 -------------GAFYGPKIEF---SLRDCLGRIWQCGTVQVDFSVPERLG-------- 502

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   DG       +    +G+      ++     GK  +W   V    +++       
Sbjct: 503 AHYIAEDGSKKPPVMIHRAILGSFERFLGILLEESAGKLPLWLAPVQVVVMNIT------ 556

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   +    L  +G     D   E+IG +     +   P  V++G + V+D  + +
Sbjct: 557 DRQADYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREVADKTLSV 616

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           +         ++LEE         S  
Sbjct: 617 RALEDEASTTITLEEFARQLKAEISQR 643


>gi|125624939|ref|YP_001033422.1| ThrS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|166223350|sp|A2RN48|SYT_LACLM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|124493747|emb|CAL98736.1| ThrS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071738|gb|ADJ61138.1| threonyl-tRNA synthetase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 646

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 166/441 (37%), Gaps = 35/441 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L + +E   RD      +L L      +   G   WLP G      +   + +++ + G 
Sbjct: 232 LKLREEAKERDHRKLGRELDLF-FNDAELGAGTAYWLPAGATIRRIIERFVVDQEVKNGY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSY 125
             +  P + + + + +SG +  Y ++M    D  D + M   P +      I++ H+ SY
Sbjct: 291 QHVITPVMMNLNTYKQSGHWQHYHEDMYPPMDMGDGEEMELRPMNCPSHIAIYKHHVHSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +  +  R E      G+ R RE  + D ++F +  +  +  ++K+    + +
Sbjct: 351 RELPIRIAEFGMMHRYEKSGALSGLQRVREMTLNDGHTFVMLEQVQEE-FSKILQLIMDM 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDII 243
           +   G+     R                  D  +T  +   D M     +      DD+ 
Sbjct: 410 YRDFGINDYSFRLS--------------YRDPKDTVKYFPDDEMWEKSQAMLKATMDDMK 455

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    D+   ++  +L   + +S   ++  +              ++ 
Sbjct: 456 LDYVEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLDFLNP--------ENFDISYV 504

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           GADG+ H   M     G +  +   I    +     +P  +AP + ++I +   +++  D
Sbjct: 505 GADGEKHRPVMIHR--GVISTLERFIAYLIEVYKGAFPTWLAPTQATIIPVN--NEIHAD 560

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              KI   L   G  V  D+  E++G +   +     P Q+++G +  +D  V I+   +
Sbjct: 561 YAWKIQRELQDKGFRVVVDEANEKMGWKIRQSQTHKIPYQIVIGDQEQADGTVNIRRYGS 620

Query: 424 GIREDMSLEEVINYASHRFSN 444
              E +  E+ I   S   +N
Sbjct: 621 KETEVIPFEDFIEKISADVAN 641


>gi|325140439|gb|EGC62960.1| prolyl-tRNA synthetase [Neisseria meningitidis CU385]
          Length = 599

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANVE 263



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 7/229 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPEN--K 275
           F  K + DF    +                +     A      D+ N    D  P+   +
Sbjct: 370 FTGKVYADFATEKDADWVIGANEDGYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGR 429

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               RGIEVGH+F    KY+  M+  F   +GK   ++MG YGIG  RVVAA IE ++D 
Sbjct: 430 LKLTRGIEVGHVFQLRDKYTHAMNVNFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDE 489

Query: 336 KGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     
Sbjct: 490 KGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAGVLLND 549

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 550 SELLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIVARVTASLN 598


>gi|254521784|ref|ZP_05133839.1| prolyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
 gi|219719375|gb|EED37900.1| prolyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
          Length = 567

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 114/223 (51%), Positives = 150/223 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V  I+REE
Sbjct: 1   MRLSQFHLHTTKETPSDAELTSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E  +PT+Q  +LW ++GR+  +G ++L++ DR D+   Y PT EE   D  RS
Sbjct: 61  MDRAGAVEFQIPTIQPKELWEQTGRWQKFGPQLLKIKDRKDQVFCYSPTAEEAACDFARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQ+Q KFRDE+RPRFGVMRSREFLMKDAYSF L  E     Y  M  +
Sbjct: 121 ELSSYKQLPVNFYQVQTKFRDEIRPRFGVMRSREFLMKDAYSFHLHDECLVREYENMKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  
Sbjct: 181 YSRIFTRLGLDFRMVQADSGAIGGDASQEFHVIADSGEDALVF 223



 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 2/184 (1%)

Query: 258 ATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             +D+ N +  D +L   +   ARGIEVGH+F  G  Y+  + AT    +GK   + MG 
Sbjct: 383 EVADIRNVRAGDRALDGGELKIARGIEVGHVFQLGRTYAKALDATVLDENGKAAVMAMGC 442

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE-KIYARLSKV 375
           YGIG  RVVAA IE +HD  GIIWPD++AP+++ +  I              +   L   
Sbjct: 443 YGIGISRVVAAAIEQNHDDAGIIWPDAMAPWQVVVCVINPKGDAAVADAAASLLQELRDA 502

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G D   DD G + G+ FA  +L+G P +V+V  + ++    E + R     E +    ++
Sbjct: 503 GLDAALDDRGLRPGAMFADMELIGIPHRVVVSERGLAAGTYEYRSRRASEAESLDKATLL 562

Query: 436 NYAS 439
               
Sbjct: 563 QRLQ 566


>gi|190572717|ref|YP_001970562.1| prolyl-tRNA synthetase [Stenotrophomonas maltophilia K279a]
 gi|226701342|sp|B2FMR5|SYP_STRMK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|190010639|emb|CAQ44248.1| putative prolyl-tRNA synthetase [Stenotrophomonas maltophilia
           K279a]
          Length = 567

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 114/223 (51%), Positives = 150/223 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V  I+REE
Sbjct: 1   MRLSQFHLHTTKETPSDAELTSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E  +PT+Q  +LW ++GR+  +G ++L++ DR D+   Y PT EE   D  RS
Sbjct: 61  MDRAGAVEFQIPTIQPKELWEQTGRWQKFGPQLLKIKDRKDQVFCYSPTAEEAACDFARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQ+Q KFRDE+RPRFGVMRSREFLMKDAYSF L  E     Y  M  +
Sbjct: 121 ELSSYKQLPVNFYQVQTKFRDEIRPRFGVMRSREFLMKDAYSFHLHDECLVREYENMKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y RIF RLGL    ++A+SG IGGD S EF V+AD+GE  +  
Sbjct: 181 YSRIFTRLGLDFRMVQADSGAIGGDASQEFHVIADSGEDALVF 223



 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 95/187 (50%), Gaps = 2/187 (1%)

Query: 255 PYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           P    +D+ N +  D +L   +   ARGIEVGH+F  G KY+  + AT    +GK   + 
Sbjct: 380 PEPEVADIRNVRAGDRALDGGELKIARGIEVGHVFQLGRKYAEALDATVLDENGKAAVMA 439

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARL 372
           MG YGIG  RVVAA IE +HD  GIIWPD++AP+++ +  I    D    DA   +   L
Sbjct: 440 MGCYGIGISRVVAAAIEQNHDDAGIIWPDAMAPWQVVVCVINPKGDAAVADAAASLLQEL 499

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G D   DD G + G+ FA  +L+G P +V+V  + +     E + R     E +   
Sbjct: 500 RDAGLDAALDDRGLRPGAMFADMELIGIPHRVVVSERGLGAGTYEYRSRRASEAESLDKA 559

Query: 433 EVINYAS 439
            ++    
Sbjct: 560 TLLQRLQ 566


>gi|291287861|ref|YP_003504677.1| threonyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885021|gb|ADD68721.1| threonyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
          Length = 637

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 156/443 (35%), Gaps = 42/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L T    +   G   +LP G    + +    ++E  + G
Sbjct: 228 YLNMLEEAEKRDHRKIGKQLKLFT-FSEEAGAGFPIYLPNGGALRNVLETYEKQEHIKRG 286

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P++   DLW +SG YD+Y + M      +D      P +      +F S I+SY
Sbjct: 287 YDIVYGPSILKQDLWKKSGHYDNYRENM-YFTKIDDVDYGVKPMNCLAHMMVFNSDIRSY 345

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  ++++    R E      G++R R F   DA+ F    + +      +      +
Sbjct: 346 RDLPQRYFELGTVHRHEKSGVLHGLLRVRAFTQDDAHLFCTPEQLNDE-IIGIIDFVDEV 404

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             + G                   E+ +   T   +   S D  +    +          
Sbjct: 405 MGKFG------------------FEYEIEVSTKPEKYIGSDDNWEKATNALFEALKTKGL 446

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   KL D++    + +    +    F    K+       + G
Sbjct: 447 EYEINEGDGAFYGPKIDI---KLKDAIGRYWQCATIQAD----FNLPEKFD----LNYIG 495

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +    +G++     V+     G   +W        I++           D
Sbjct: 496 EDGQKHRPVMLHRVILGSVDRFIGVLTEHFAGAFPVWVAPKQVRVINIT------DGQLD 549

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C+ +  +L   G  V  D   E++G +   A +   P  +I+G   V    V ++ R  
Sbjct: 550 YCKALVQKLKAEGFRVDSDLRNEKVGFKIREAQMEKIPHMLIIGQNEVDKELVSVRLRNG 609

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
             + ++     +   +     N+
Sbjct: 610 ENKNELDFSTYLGVLT-ELDKNK 631


>gi|328953980|ref|YP_004371314.1| threonyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
 gi|328454304|gb|AEB10133.1| threonyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
          Length = 640

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/438 (18%), Positives = 145/438 (33%), Gaps = 43/438 (9%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           L  L+E  R D      +L L +  I + +  G+  + P G +    +    R E  R G
Sbjct: 233 LHFLEEAKRRDHRRLGRELGLFS--IEEEAGPGLVIYHPKGARLRLVLEDFERREHLRRG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  PTL   DLW  SG +++Y + M    +         P +      I++S I+SY
Sbjct: 291 YQIVMGPTLLKLDLWKRSGHFENYRENM-YFTEIEGIDYGIKPMNCLAHMLIYKSSIRSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP   +++    R E      G+ R R+F   DA+      +        +      +
Sbjct: 350 RELPLRLFELGTVHRHERSGVLHGLTRVRQFTQDDAHILCRPDQVETE-IAGVIDFVAEV 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G                   E+ V   T   +   S +  +    +          
Sbjct: 409 MAVFG------------------FEYEVELSTRPEKSIGSDEDWERATSALINALQTRNL 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +  E   A Y    D+   KL D++    + +    +    F    ++      T+ G
Sbjct: 451 PFATCEGEGAFYGPKIDI---KLKDAINRRWQCATVQCD----FTLPERFD----LTYIG 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG  H    +    +G++     V+   + G   +W   V    + +            
Sbjct: 500 PDGNPHRPVMLHRVILGSLERFLGVLIEHYAGAFPVWLAPVQAIILPVT------DRAHP 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +  RL      V  D   E++G +   A L   P  +I+G + V+   + ++    
Sbjct: 554 FALDVARRLQAEELRVETDLRNEKLGLKIREAQLQKIPYMIIIGDREVAAQTLSVRRLDG 613

Query: 424 GIREDMSLEEVINYASHR 441
              +D   EE +      
Sbjct: 614 TEIKDTPWEEFVRLLKTE 631


>gi|257456688|ref|ZP_05621878.1| threonyl-tRNA synthetase [Treponema vincentii ATCC 35580]
 gi|257445881|gb|EEV20934.1| threonyl-tRNA synthetase [Treponema vincentii ATCC 35580]
          Length = 586

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 149/438 (34%), Gaps = 38/438 (8%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +  +    D      +L L    I + + G   W P G      V   +R++   
Sbjct: 172 KTYLTMQAEAEKHDHRKIGRELDLF--HIEEDNPGEVFWHPNGWTLYLTVQQHVRQKIKE 229

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E++ P +    LW+ SG ++ Y + M  + +   +     P +     +IF+  IK
Sbjct: 230 DGYVEVNTPFVMPQSLWLRSGHWEKYKENMF-ITESEKRMFALKPMNCPGHVEIFKQGIK 288

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  DA+ F    + S            
Sbjct: 289 SYRDLPLRIAEFGSCTRNEPSGSLHGIMRVRGFVQDDAHIFCTEEQISSEVCK------- 341

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                       +        G      +V   T   +        D    +        
Sbjct: 342 ---------FCNLLKSLYRDFGFDDKAILVKFSTRPEKRVGDDATWDRAENALAEACKAA 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I     A Y    +     L D+L    +      +        +K    ++A +
Sbjct: 393 GLEYEIAPGEGAFYGPKLEF---TLVDALGREWQCGTIQADY----QLPSK--DRLNAEY 443

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D + H    +    +G++     ++     G    W   V    I +  +       
Sbjct: 444 IGEDNQKHQPVMLHRAALGSLERFIGILIEQFGGALPPWLSPVQAMVIPVAPV------F 497

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E+I + L+K G  V  D   +++ ++         P Q++VG K    + V ++  
Sbjct: 498 NEYAEQIASVLTKAGFRVKADIDTDRMNAKIRKYQEQKIPYQLVVGEKEKQSNSVTVRLL 557

Query: 422 LTGIREDMSLEEVINYAS 439
             G ++ MS++E   +  
Sbjct: 558 K-GEQKTMSVDEFAAFLK 574


>gi|57234472|ref|YP_181487.1| threonyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
 gi|123759710|sp|Q3Z8G2|SYT_DEHE1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57224920|gb|AAW39977.1| threonyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
          Length = 582

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 154/442 (34%), Gaps = 40/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +    +   G+ +WLP G      +    ++E  + G
Sbjct: 174 YLNMLEESAKRDHRKLGKELELFSLH-QEIGGGLVNWLPNGAIVRHLIEEFWKKEHLKRG 232

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DLW  SG +  Y + M    D + +  +  P +      +F++  +SY
Sbjct: 233 YSLVYTPHIAKVDLWKTSGHWGFYRENMYSPMDIDGEEYVLKPMNCVYHILMFKNRTRSY 292

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP    ++   +R E      G+ R R F   DA+ F L  +  K     +      +
Sbjct: 293 KELPIRMAELGTVYRYERSGVLHGLSRVRGFTQDDAHIFCLYEQLEKEVVK-VLDLAKFM 351

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     +   + P                  +     D  ++         +    
Sbjct: 352 IDTFGFTRYKVMLSTRP-----------------EKYVGELDKWEYATDILAKALESNQI 394

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +       Y    D+  E   D+L    +     ++    F    ++      +  G
Sbjct: 395 AYQVDPGEGVFYGPKIDIKFE---DALGRAWQGPTIQVD----FQLPERFD----VSVVG 443

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGKD  V  +    +G+M    + +    +  G  +P  ++P ++ LI I        +
Sbjct: 444 EDGKDQPVAMVHRTVLGSMERFMSCLT---EQYGGAFPVWLSPKQVMLIPIADRHS---E 497

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+   L +    V  D+  E +  +   A L   P  ++VG K +    V I+ R +
Sbjct: 498 FAEKLACELREEEVRVEVDNRSETMNQKIRQAQLAKIPYMLVVGDKEIETQSVSIRTR-S 556

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G +  M   E  +    +    
Sbjct: 557 GSQCVMPFAEFKSMLIDKIKTK 578


>gi|315655426|ref|ZP_07908326.1| threonine--tRNA ligase [Mobiluncus curtisii ATCC 51333]
 gi|315490366|gb|EFU79991.1| threonine--tRNA ligase [Mobiluncus curtisii ATCC 51333]
          Length = 669

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 63/457 (13%), Positives = 135/457 (29%), Gaps = 47/457 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD     ++L L +    +   G+  + P G      +    R    
Sbjct: 245 LKEYVTRMEEAAKRDHRRLGNELDLFS-FPEEIGSGLAVFHPKGAMVRMEMENYSRRRHL 303

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTH 110
             G   +  P +    L+  SG  + Y   M                 +        P +
Sbjct: 304 EEGYSFVYTPHVTKGQLFETSGHLEWYKDGMFPPMRVDEECDDQGNVTKEGFDYYLKPMN 363

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
             +   I++S  +SYR LP   ++    +R E      G+ R R F   D++ +    + 
Sbjct: 364 CPMHNLIYKSRSRSYRELPLRLFEFGTVYRYEKSGVVHGLTRGRGFTQDDSHIYCTREQM 423

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                  +    L +    GL    +   +                    +   S +  +
Sbjct: 424 KDELTK-LLTFVLDLLKDYGLDDFYLELST----------------KNPHKFVGSDEIWE 466

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
               +                +  A Y       + +  D++    ++S   ++    F 
Sbjct: 467 EATNTLAEVATASGLELVPDPEGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FN 519

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
              ++ L  +A       +   V +     G++     V+   + G    W         
Sbjct: 520 LPERFDLEYTAA---DGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW------LAP 570

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
             + +    +   D C+ I  RL      V  D   ++ G +   A     P  +I G +
Sbjct: 571 VQVRLVPVAETFNDYCDDIANRLRAENVRVEVDTTDDRFGKKIRNAAKDKIPFTLIAGGE 630

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
               + V  ++R    +  + +++ I        + R
Sbjct: 631 DAEANAVSFRYRGGEQKNGVPIDQAIAEILEAIRSRR 667


>gi|28199512|ref|NP_779826.1| prolyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182682245|ref|YP_001830405.1| prolyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|81839496|sp|Q87B25|SYP_XYLFT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701358|sp|B2I7W6|SYP_XYLF2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28057627|gb|AAO29475.1| prolyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182632355|gb|ACB93131.1| prolyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|307578519|gb|ADN62488.1| prolyl-tRNA synthetase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 564

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 113/223 (50%), Positives = 150/223 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+R+E
Sbjct: 1   MRLSEFHLHTTKEIPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM +PT+Q  +LW ES R++ +G ++L++ DR      Y PT EE +TD  R 
Sbjct: 61  MNRAGAVEMLLPTIQPRELWEESERWEKFGSQLLKIKDRKQAEYCYSPTAEEAVTDYVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L        Y  M  +
Sbjct: 121 ELTSYKQLPVNLYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLNDADLVREYENMRAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE  +  
Sbjct: 181 YTRIFTRLGLEFRAVQADSGAIGGDASQEFHVIADSGEDVLAF 223



 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 64/184 (34%), Positives = 95/184 (51%), Gaps = 2/184 (1%)

Query: 258 ATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             +D+ N    D ++   K   ARGIEVGH+F  G KY+  M AT     GK   + MG 
Sbjct: 380 VVADIRNVIEGDRAVDGGKICIARGIEVGHVFQLGRKYAEAMKATVLDEYGKAVTMTMGC 439

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+VAA IE +HD  GIIWP  +AP+++++  I    D V   A E + A L   
Sbjct: 440 YGIGVSRIVAAAIEQNHDVAGIIWPAPIAPWQVAVCVINPKKDPVITAAAEMLLAELQSA 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D   DD G + G  FA  +L+G P +++V  + ++    E + R T + E++    ++
Sbjct: 500 DVDTVLDDRGLRPGVMFADMELIGIPHRIVVSERGLAAGTYEYRARRTAMVENLDKTTLL 559

Query: 436 NYAS 439
               
Sbjct: 560 TRIK 563


>gi|115638543|ref|XP_783415.2| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative) isoform 1 [Strongylocentrotus
           purpuratus]
 gi|115931464|ref|XP_001186319.1| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative) [Strongylocentrotus
           purpuratus]
          Length = 569

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 152/452 (33%), Positives = 223/452 (49%), Gaps = 42/452 (9%)

Query: 2   RRSKYFLPI--LQE--NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAII 57
           R SK + P   L E     D +  SH+LM+  G+I Q S G +  LPL  +AL+ +  +I
Sbjct: 137 RVSKMYQPSFVLPEGSKVADVKCKSHRLMMEAGLIRQASPGTFHLLPLAMRALEKLIKVI 196

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
             E  + G  ++++P +  + LW  SGRY  YG E++ L DR++     GPTHEE +TDI
Sbjct: 197 DTEMQKVGGQKIAMPGMTPSSLWKTSGRYSDYGPELITLQDRHNVDYCLGPTHEEAVTDI 256

Query: 118 FRSHI-KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
                  S++ LP   YQI  KFRDE+RPR+G++R REFLMKD Y+FD   EG++ +Y  
Sbjct: 257 VAGEKTLSHKRLPIKLYQITNKFRDEMRPRYGLLRGREFLMKDLYTFDSNLEGAEETYRS 316

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +  +Y RIF  L L  +     +G IGG  SHEF +L++ GE  V+              
Sbjct: 317 VCEAYQRIFSILDLPIVQAVGATGAIGGSFSHEFHLLSEIGEDHVYHCSRC--------- 367

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                          +         V +     S P+      +GIEVGH F  GTKYS 
Sbjct: 368 --------------GYAVNQETVEGVPSCPDHPSTPDCNMSLRQGIEVGHAFLLGTKYSK 413

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              A F   DGK    +MG YG+G  R++AA IE     K I WP  +AP+++ +++ K 
Sbjct: 414 TFKADFYDKDGKPRLAEMGCYGLGVTRILAAAIEVLSSEKEIRWPQIIAPYQVCIVSPKE 473

Query: 357 HDQV--CRDACEKIYAR-------LSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIV 406
                      E +Y         L+    D+  DD G   IG +   A  +G+PL V+V
Sbjct: 474 GGAERSAIHLAEWLYQDVCLHVPHLAA---DLLLDDRGHMTIGRRVKDAAHVGYPLIVVV 530

Query: 407 GSKFVS-DSKVEIKHRLTGIREDMSLEEVINY 437
           G + +  D K E+ +  +G  E +S  +++  
Sbjct: 531 GKRALEADPKFEVINTASGSTEYLSKVDLLQR 562


>gi|294673346|ref|YP_003573962.1| threonine--tRNA ligase [Prevotella ruminicola 23]
 gi|294474289|gb|ADE83678.1| threonine--tRNA ligase [Prevotella ruminicola 23]
          Length = 648

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 152/443 (34%), Gaps = 38/443 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      ++ L      +  KG+  WLP G +    +   +R+ Q R G
Sbjct: 234 YLEMLEEAKKRDHRKIGKEMELFM-FSEKVGKGLPIWLPKGTELRLRLQDHLRKVQKRFG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             E+  P + S +L+V SG Y  YGK+  +       D+  +  P +     +IF    +
Sbjct: 293 YQEVITPHIGSKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEIFAWKPR 352

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +    +R E      G+ R R F   DA+ F    +  +  +  +     
Sbjct: 353 SYRDLPLRIAEFGTVYRYEQSGELHGLTRVRSFTQDDAHLFCRPDQVKQE-FLNVMDIIG 411

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G       +   P   D              +   + +       +      + 
Sbjct: 412 IVLTAFGFNFEAQISLRDPNDHD--------------KYVGTDEDWALAEKAIVEACQEK 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    D     + D++    ++    ++               +  +
Sbjct: 458 GLPAKVEYGEAAFYGPKLDFM---IKDAIGRRWQLGTIQVDYNLP--------KRFNLEY 506

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D +      +     G+M    AV+     G   +W           + I    +  
Sbjct: 507 TDEDNQKKTPVMIHRAPFGSMERFCAVLIEHTSGHFPLW------LTPDQVAILPLSEKY 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++  +    G     D   E++G +    +L   P  VIVG K  ++  V ++ +
Sbjct: 561 NDYAQEVAKKFDMGGVRATVDMRNEKLGRKIRDNELKRIPYMVIVGEKEAAEGTVAVRPQ 620

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
             G +   +++E I+  + R + 
Sbjct: 621 GGGEQSVKTIQEFIDEVNARVAE 643


>gi|163735041|ref|ZP_02142478.1| threonyl-tRNA synthetase [Roseobacter litoralis Och 149]
 gi|161391823|gb|EDQ16155.1| threonyl-tRNA synthetase [Roseobacter litoralis Och 149]
          Length = 648

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 140/442 (31%), Gaps = 45/442 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W P G      +   +R +Q  
Sbjct: 234 KAHLTMLEEAAKRDHRKLGREMDLF--HMQEEAPGQVFWHPNGWSIYTTLQDYMRRKQRA 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +D Y + M  +       R        P +      IF
Sbjct: 292 AGYQEVNTPQVVDRKLWEASGHWDKYQEHMFIVEVDEEHAREKAVNALKPMNCPCHVQIF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D + F    +  +      
Sbjct: 352 NQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIFCR-EDQIEAECAAF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++  LG +   +   + P     S E                   D    +   
Sbjct: 411 ITYLSSVYQDLGFEKFEIMFATRPEKRVGSEE-----------------SWDHVEAALEN 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                    ++     A Y    D    KL D++    +     ++              
Sbjct: 454 AIKATGHPYTLDAGEGAFYGPKLDF---KLTDAIGREWQCGTFQVDPNLP--------ER 502

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + ATF G DG  H    +    +G+      ++  +  GK   W         S+I    
Sbjct: 503 LDATFIGEDGAKHRPYMLHRACLGSFERFIGILIENSAGKLPFWLAPRQVVVASIIT--- 559

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++  +L   G     D   E+I  +     +   P+ + VG++ V +  V
Sbjct: 560 ---DANDYVMQVVDQLKAAGVRAEADLRNEKINYKVREHSVGKVPVILAVGAREVEEQTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYA 438
            ++          SLE V    
Sbjct: 617 TLRRLGEKKTTVESLEAVTQAL 638


>gi|148909063|gb|ABR17634.1| unknown [Picea sitchensis]
          Length = 682

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 160/444 (36%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKG-IYSWLPLGQKALDNVNAIIREEQN 62
           K +  + +E  R D      +L L +  I + + G +  W P G     N+    +    
Sbjct: 273 KTYQFLKEEAKRRDHRRLGQELDLFS--IQEEAGGGLVFWHPRGAIIRQNIEDFWKRTHI 330

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  ADLW  SG  + Y + M    D  D+     P +      +++  +
Sbjct: 331 QHGYELLYTPHVDKADLWKISGHLEFYKENMFNQMDIEDELYQLRPMNCPYHILVYKHSL 390

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LPF   ++   +R E+     G+ R R F   DA+ F L P   K     +    
Sbjct: 391 RSYRDLPFKVAELGTVYRYEMSGSLHGLFRVRGFTQDDAHIFCL-PSQIKDEIRGVLDLT 449

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I  +   K+  +   + P                  +   S    +    +     +D
Sbjct: 450 EAILSQFDFKNYEINLSTKP-----------------EKAVGSDVIWEKATSALKDALED 492

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                S+ E   A Y    D+   K+ D+L    + S   ++    F    ++ L     
Sbjct: 493 KGWDYSVDEGGGAFYGPKIDL---KIEDALGRKWQCSTVQVD----FNLPQRFDLFY--- 542

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 K   + +    +G++     ++    +     +P  ++P +  ++ +       
Sbjct: 543 IDSNSEKKRPIMIHRAILGSLERFFGILI---ENYAGDFPLWLSPVQARILPVT---DTQ 596

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              C+K+ A++ +          GE++      ++    PL  +VG + V    + ++ R
Sbjct: 597 VPYCQKVVAKMKEKDIRAELSY-GERLSKLIRNSETHKIPLMAVVGPREVESGTLTVRTR 655

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    M+++EVI       +N 
Sbjct: 656 HGGELGTMTIDEVIEKIKKAAANR 679


>gi|228954095|ref|ZP_04116124.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229071317|ref|ZP_04204540.1| Prolyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228711771|gb|EEL63723.1| Prolyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228805661|gb|EEM52251.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 566

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFTRCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|254285550|ref|ZP_04960514.1| prolyl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|150424412|gb|EDN16349.1| prolyl-tRNA synthetase [Vibrio cholerae AM-19226]
          Length = 571

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 115/237 (48%), Positives = 154/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  GT YS  M+     ++GK+  ++M
Sbjct: 382 GKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +     +  + A EK+YA L+
Sbjct: 442 GCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E K+R +G +E +++  
Sbjct: 502 AAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFEYKNRRSGEKEAVAMAS 561

Query: 434 VINYASHRFS 443
           +I++   + +
Sbjct: 562 IIDFIQAKLA 571


>gi|332529095|ref|ZP_08405059.1| threonyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
 gi|332041318|gb|EGI77680.1| threonyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
          Length = 644

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 150/446 (33%), Gaps = 44/446 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L    + +HS G   W P G      V   +R      G
Sbjct: 231 YILRMEEAEKRDHRKLGRELDLF--HLDEHSPGTVFWHPKGWTVWQEVEQYMRRVYRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D Y + M    +   +     P +      I++  +KSY
Sbjct: 289 YREVKGPQILDKSLWEKTGHWDKYRENMFT-TESEKRDYALKPMNCPGHILIYKQGVKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F   D + F  T +  +           ++
Sbjct: 348 RDLPLRYGEFGACHRNEPTGGLHGIMRVRAFTQDDGHIFC-TEDQIQAEVKAFTSLLQKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  +  + P     S E                   D    +          
Sbjct: 407 YKDFGFTEIIYKLSTRPEKRIGSEE-----------------SWDRAENALAEGLRASGC 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    +     L D+L    +     ++              + A F G
Sbjct: 450 EFDYLPGEGAFYGPKIEY---TLKDALGRQWQCGTIQVDPNLP--------ERLDAEFVG 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG  H    +    +G++     ++    +  G   P  +AP +++++NI        D
Sbjct: 499 EDGGRHRPVMLHRAIVGSLERFIGILI---EQHGGALPAWLAPTQVAVLNIT---DAQAD 552

Query: 364 ACEKIYARLSKV----GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            C++I  +L K        V  D   E+I  +     +   P  ++ G K  +   V ++
Sbjct: 553 YCQEIAQKLRKALPNQELRVETDLRNEKITYKIREHSMQKLPFILVAGDKEKAAGAVAVR 612

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       MSL+  I   +   ++ 
Sbjct: 613 ARGNKDLGVMSLDAFIQLIAQDIAHK 638


>gi|9105289|gb|AAF83255.1|AE003895_6 prolyl-tRNA synthetase [Xylella fastidiosa 9a5c]
          Length = 582

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 113/223 (50%), Positives = 150/223 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+R+E
Sbjct: 19  MRLSEFHLHTTKEIPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVRDE 78

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM +PT+Q  +LW ES R++ +G ++L++ DR      Y PT EE +TD  R 
Sbjct: 79  MNRAGAVEMLLPTIQPRELWEESERWEKFGNQLLKIKDRKQAEYCYSPTAEEAVTDYVRQ 138

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L        Y  M  +
Sbjct: 139 ELTSYKQLPVNLYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLNDADLVREYENMRAT 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE  +  
Sbjct: 199 YTRIFTRLGLEFRAVQADSGAIGGDASQEFHVIADSGEDVLAF 241



 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/184 (35%), Positives = 96/184 (52%), Gaps = 2/184 (1%)

Query: 258 ATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             +D+ N    D ++   K   ARGIEVGH+F  G KY+  M AT     GK   + MG 
Sbjct: 398 VVADIRNVIEGDRAVDGGKICIARGIEVGHVFQLGRKYAEAMKATVLDEYGKAVTMTMGC 457

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+VAA IE +HD  GIIWP S+AP+++++  I    D V   A E + A L   
Sbjct: 458 YGIGVSRIVAAAIEQNHDVAGIIWPASIAPWQVAVCVINPKKDPVITAAAEVLLAELQSA 517

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D   DD G + G  FA  +L+G P +++V  + ++    E + R T + E++    ++
Sbjct: 518 DVDTVLDDRGLRPGVMFADMELIGIPHRIVVSERGLAAGTYEYRARHTAMVENLDKTTLL 577

Query: 436 NYAS 439
               
Sbjct: 578 MRIK 581


>gi|330445168|ref|ZP_08308820.1| prolyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489359|dbj|GAA03317.1| prolyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 571

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 113/237 (47%), Positives = 153/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG+ S EF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLEYRPVWADSGAIGGNGSQEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 116/206 (56%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D     +   +  RGIEVGHIF  GT YS  M
Sbjct: 366 DDKHHVGINWGRDVELGRVEDLRNVVEGDPSPCGQGTLMLKRGIEVGHIFQLGTTYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +     ++GK+  ++MG YGIG  RVVA+ IE ++D  GIIWPD++APF++S++ +    
Sbjct: 426 NCGVLDSNGKNVILEMGCYGIGVSRVVASAIEQNNDENGIIWPDAIAPFQVSIVPMNMAK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+  G DV +DD  E+ G  FA  +L+G P  +++G++ + + ++E
Sbjct: 486 SEEVKEAAEKLYAELTAAGIDVLFDDRKERPGVMFADHELIGIPHTIVIGNRSLENGEME 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G +E +++ +V+ +   + +
Sbjct: 546 YKNRRAGTKEAVAVNDVVEFLKQKLA 571


>gi|284799796|ref|ZP_05984887.2| proline--tRNA ligase [Neisseria subflava NJ9703]
 gi|284796829|gb|EFC52176.1| proline--tRNA ligase [Neisseria subflava NJ9703]
          Length = 595

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  I+REE
Sbjct: 26  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENIVREE 85

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 86  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 145

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 146 EVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 205

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 206 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 259



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 7/226 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPE--NKRVS 278
           K + DF               +     +     A      D+ N    D  P+   +   
Sbjct: 369 KVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVIEGDISPDEQGRLKL 428

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 429 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 488

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +W  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     ++L
Sbjct: 489 VWTKAMAPFEVVIVPMNYKKSDAVREAADKIYAELLAAGADVLLDDRDERAGVLLNDSEL 548

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG P ++++G + + +  VE   R     + +++ EV+       +
Sbjct: 549 LGIPHRIVIGDRALKEGNVEYAERRNNQAQAVAVSEVVAKVLAALN 594


>gi|260433159|ref|ZP_05787130.1| threonyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416987|gb|EEX10246.1| threonyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 652

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 147/443 (33%), Gaps = 45/443 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L    + + + G   W P G      +   +R +Q R
Sbjct: 238 KAYLHMLEEAAKRDHRKLGREMDLF--HMQEEAPGQIFWHPNGWTIYTQLQDYMRRQQRR 295

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G +E++ P +    LW  SG +D Y + M  +       R        P +     +IF
Sbjct: 296 GGYVEVNTPQVVDRKLWERSGHWDKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVEIF 355

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    +       + 
Sbjct: 356 KQGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFAQDDAHIFSTEDQIGDEC-ARF 414

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++  LG  S  ++    P     S E                   D    +  T
Sbjct: 415 IGFLTDVYKDLGFDSFKVKFSDRPEQRAGSDE-----------------VWDKAEEALLT 457

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     +     A Y    +     L D++  + +     ++    F    +    
Sbjct: 458 ATRAAGVEPELNPGEGAFYGPKLEF---VLTDAIGRDWQCGTFQVD----FVLPER---- 506

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ GADG  H    +    +G+      ++   H GK   W         S+     
Sbjct: 507 LDATYIGADGAKHRPVMLHRACLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIT---- 562

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++   L   G     D   E+I  +     +   P+ + VG + V +  V
Sbjct: 563 --SEADDYVLEVVETLKAAGVRAEADIRNEKINYKVREHSVGKVPVILAVGHREVEERTV 620

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
            ++       +   L+ V    +
Sbjct: 621 SVRRLGEKQTQVQPLDAVTKELA 643


>gi|165924098|ref|ZP_02219930.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 334]
 gi|165916454|gb|EDR35058.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 334]
          Length = 653

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 147/447 (32%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD  + + K+ L        S G   W P G   +  +   IR  
Sbjct: 235 KALKAYLYRLEEAEKRDHRLLAKKMDLF--HFQPESPGNVFWHPNGWSIILQMREYIRHI 292

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+  P L  A LW +SG  + +G ++  L     +  +  P        IF  
Sbjct: 293 THKYGYQEVHTPQLIDASLWDKSGHLEKFGDDIFSLPLEP-QQYVIKPMSCPAHVQIFNQ 351

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP  + +     R+E      G+MR R F+  DA+ F    +      +    
Sbjct: 352 GVKSYRDLPLRYAEFGACHRNEPSGTLHGLMRLRGFVQDDAHIFCTEDQIQSE-VSAFID 410

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G   +  +  + P     S E    A+    +    K      +P E    
Sbjct: 411 QLHEVYADFGFTEVIHKLSTRPEKRVGSDEVWTKAEQALAEALNRKGVEWDILPGE---- 466

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                         A Y    +     L D L    +     ++       G        
Sbjct: 467 -------------GAFYGPKIEF---SLRDCLGRIWQCGTVQVDFSVPERLG-------- 502

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   DG       +    +G+      ++     GK  +W   V    +++       
Sbjct: 503 AHYIAEDGSKKPPVMIHRAILGSFERFLGILLEESAGKLPLWLAPVQVVVMNIT------ 556

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   +    L  +G     D   E+IG +     +   P  V++G + V+D  + +
Sbjct: 557 DRQADYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREVADKTLSV 616

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           +         ++LEE         S  
Sbjct: 617 RALEDEASTTITLEEFARQLKAEISQR 643


>gi|270308068|ref|YP_003330126.1| threonyl-tRNA synthetase (thrS) [Dehalococcoides sp. VS]
 gi|270153960|gb|ACZ61798.1| threonyl-tRNA synthetase (thrS) [Dehalococcoides sp. VS]
          Length = 582

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 152/442 (34%), Gaps = 39/442 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+ +WLP G      +    ++E  + G
Sbjct: 174 YLNMIEEAAKRDHRKLGKELELFSLH-QEIGGGLVNWLPNGATIRHLIEEFWKKEHLKRG 232

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DLW  SG +  Y + M    D + +  +  P +      +F++  +SY
Sbjct: 233 YNLVYTPHIAKVDLWKTSGHWGFYRENMYSPMDIDGEEYVLKPMNCVYHILMFKNRTRSY 292

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP    ++   +R E      G+ R R F   DA+ F L  +  K     +      +
Sbjct: 293 KELPIRMAELGTVYRYERSGVLHGLSRVRGFTQDDAHIFCLYEQLEKEVVK-VLDLAKFM 351

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G     +   + P                  +        ++         +    
Sbjct: 352 IDTFGFAKYKVMLSTRP-----------------EKYVGELAKWEYATDILAKALEANGI 394

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +       Y    D+  E   D+L    +     ++    F    ++      +  G
Sbjct: 395 SYQVDPGEGVFYGPKIDIKFE---DALGRAWQGPTIQVD----FQLPERF----EVSVVG 443

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGKD  V  +    +G+M    + +    +  G  +P  ++P ++ +I I        +
Sbjct: 444 EDGKDQPVAMVHRTVLGSMERFMSCLT---EQYGGAFPVWLSPKQVMIIPIADRHS---E 497

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+   L +    V  D+  E +  +   A L   P  ++VG K +    + ++ R+ 
Sbjct: 498 FAEKLACELREEEVRVEVDNRSETMNQKIRQAQLAKIPYMLVVGDKEIETGSIALRSRI- 556

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G ++ M   E  +   ++    
Sbjct: 557 GSQQVMPFAEFKSMLLNKIKTK 578


>gi|225630645|ref|YP_002727436.1| threonyl-tRNA synthetase [Wolbachia sp. wRi]
 gi|254783546|sp|C0R403|SYT_WOLWR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225592626|gb|ACN95645.1| threonyl-tRNA synthetase [Wolbachia sp. wRi]
          Length = 633

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/442 (19%), Positives = 156/442 (35%), Gaps = 40/442 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
             +L  L+E   RD    +  + L    I + + G   W   G    + + + IR++   
Sbjct: 227 NAYLECLKEAEKRDHRKIAKDMDLF--HIQEEAVGQVFWHEQGYILYNVLESYIRKKLIN 284

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L S +LW +SG +D + + M  + +   K +   P +      IF SH +
Sbjct: 285 NGYFEVKTPILVSKELWEKSGHWDKFRENMFIVDESESKKLAIKPMNCPCHVQIFNSHTR 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F +  + +  +         
Sbjct: 345 SYRDLPIRMAEFGTCHRNESSGSLHGLMRVRGFTQDDAHIFCMEEQVNSETIKF-CDLLK 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++  LG   I ++    P       E                   D    +      + 
Sbjct: 404 EVYSELGFNEISVKFSDRPDVRAGDDE-----------------VWDRAEKALLEAVKEA 446

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    +     L D++  + +     ++       G        A +
Sbjct: 447 GLSYELSPGEGAFYGPKLEF---VLKDAIGRSWQCGTLQVDFILPERLG--------AFY 495

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG  H+   +    +G       ++  ++ GK  +W        +++ N        
Sbjct: 496 IGADGHKHHPVMLHRAILGTFERFIGILIENYAGKFPVWLAPTQLAILTITN------EA 549

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                KI   L + G  V  D   E+I  +  +  L   P+  IVG   V+   V +++ 
Sbjct: 550 DGYATKISNVLKEQGVRVKTDLTNEKISYKIRLHSLNKVPILWIVGKNEVTSKTVSVRNL 609

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            +  +E  SLE+ I       +
Sbjct: 610 GSERQESFSLEKAIELLLKSIN 631


>gi|209694468|ref|YP_002262396.1| prolyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
 gi|226731423|sp|B6EHZ8|SYP_ALISL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|208008419|emb|CAQ78577.1| prolyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
          Length = 571

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 115/237 (48%), Positives = 153/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRRLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEEMGPELLRFTDRHARPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y R F R+GL+  P+ A+SG IGG  S EF VLA++GE  +       D+    E  
Sbjct: 181 YCRAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 101/175 (57%), Gaps = 1/175 (0%)

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              +      RGIEVGHIF  GT YS  M+     A+GK+  ++MG YGIG  RVVA+ I
Sbjct: 397 PCGQGTLQLKRGIEVGHIFQLGTAYSEAMNCGVLDANGKNSILEMGCYGIGVSRVVASAI 456

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           E ++D  GI+WP+++APF ++++ +        ++A EK+YA L+ +G DV +DD  E+ 
Sbjct: 457 EQNNDEYGIVWPEALAPFTVAIVPMNMYKSDRVKEAAEKLYAELTAMGIDVLFDDRKERP 516

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G  F   +L+G P  V++G + + +   E K+R    +E + +  ++ +   + S
Sbjct: 517 GVMFKDIELIGIPHTVVIGDRSMDEGNFEYKNRRANSKEVIEIANIVEHIKAQLS 571


>gi|313668476|ref|YP_004048760.1| prolyl-tRNA synthetase [Neisseria lactamica ST-640]
 gi|313005938|emb|CBN87395.1| prolyl-tRNA synthetase [Neisseria lactamica 020-06]
          Length = 570

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 122/273 (44%), Positives = 171/273 (62%), Gaps = 5/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E     
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIELAPTL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            +    +  +             N K  DSL +
Sbjct: 240 PLKGERAAAQAELV----KVHTPNVKTIDSLVD 268



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPEN--K 275
           F  K + DF               +     +     A      D+ N    D  P+   +
Sbjct: 341 FAGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGR 400

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D 
Sbjct: 401 LKLARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDE 460

Query: 336 KGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     
Sbjct: 461 KGIIWAKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAGVLLND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 521 SELLGIPHRIVIGDRALKEGNVEYAERRENEAQAVAIGEIVARVTASLN 569


>gi|315641145|ref|ZP_07896224.1| threonine--tRNA ligase [Enterococcus italicus DSM 15952]
 gi|315483153|gb|EFU73670.1| threonine--tRNA ligase [Enterococcus italicus DSM 15952]
          Length = 650

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 159/443 (35%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 230 FIRMREEAKERDHRKLGKELDLF--MVSKEVGSGLPFWLPKGATIRRIIERYIVDKEVSL 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G + +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 288 GYMHVYTPIMADVNLYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHIMVYKNDIH 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +       
Sbjct: 348 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKEEFKRTLDLMTA 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDI 242
           ++   G+     R                  D   T  +   D   +          D++
Sbjct: 408 VYKDFGIDDYRFRLS--------------YRDPNNTDKYFDDDKMWENAQKMIKAAMDEL 453

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 454 GLDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERF----ELTY 502

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP ++ +I +        
Sbjct: 503 VGEDGENSHRPVMIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPVQVEIIPVSV--DAHS 559

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   ++  RL + G     D   E++G +   A     P Q++VG + ++D+ V I+   
Sbjct: 560 EYAYEVKERLLEKGIRAEVDGRNEKMGYKIRAAQTQKIPYQLVVGDQEMNDATVNIRRYG 619

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +       L   ++       N 
Sbjct: 620 SKETAVEELNMFVDAIVADVQNY 642


>gi|218130015|ref|ZP_03458819.1| hypothetical protein BACEGG_01598 [Bacteroides eggerthii DSM 20697]
 gi|217987818|gb|EEC54144.1| hypothetical protein BACEGG_01598 [Bacteroides eggerthii DSM 20697]
          Length = 646

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 149/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGAALRIRLQEFLRRIQARY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++  
Sbjct: 289 DYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D    + +   D           +  +
Sbjct: 408 SIVFQSMHFENFEAQISLR--------------DKVNREKYIGSDENWEKAEQAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLKAKVEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GAD + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  +++   L +       D+  E+IG +    ++   P  +IVG K   + +V ++
Sbjct: 557 KFNDYAQEVKDYLKRYDVRAIVDERNEKIGRKIRDNEMKRIPYMLIVGEKEAENREVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M  EE     +    N
Sbjct: 617 KQGEGDQGTMKFEEFAKKVNEEVQN 641


>gi|291566329|dbj|BAI88601.1| threonyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 622

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 73/437 (16%), Positives = 153/437 (35%), Gaps = 38/437 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y+    +   RD      +L L +  I +    G+  W P G +    +    R+   + 
Sbjct: 213 YWQQKEEAKKRDHRKLGQELDLFS--IQEDAGGGLVFWHPKGSRMRLLIEDYWRQAHLQG 270

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + +  LW  SG YD Y + M    +  +++    P +       ++SH+ S
Sbjct: 271 GYELLYTPHIANLALWKTSGHYDFYRENMFDQIEIENQSYQLKPMNCPFHVLTYQSHLHS 330

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  + ++   +R E      G+MR R F   DA+ F L  + +      +     +
Sbjct: 331 YRELPIRWAELGTVYRYERSGVLHGLMRVRGFTQDDAHIFCLPEQVADE-ILGVLNLTEK 389

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G     +   + P                      +         +  +  +   
Sbjct: 390 ILSDFGFSKYEVNLSTRPSKS-----------------VGNDGVWQLATDALISALNIKG 432

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D+   K+ D++    + S   ++    F    ++++   A   
Sbjct: 433 WDYVVDEGGGAFYGPKIDI---KIQDAIARLWQCSTIQVD----FNLPERFNMEYVAA-- 483

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               +   + +     G++     ++  ++ G   +W   V    + +          RD
Sbjct: 484 -DGSRQRPIMIHRAIFGSLERFFGILIENYAGDFPLWLAPVMVRVLVV------SDRFRD 536

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + I   L +       D+ GE++G Q    +L   P+ V++G + + +  + ++ R  
Sbjct: 537 YAKSIVQSLKQQNIRAEVDNTGERLGKQIRACELEKIPVTVVIGQRELDNQSLSVRTRSR 596

Query: 424 GIREDMSLEEVINYASH 440
           G    M+L ++      
Sbjct: 597 GDIGTMTLPQLTEEILK 613


>gi|71274618|ref|ZP_00650906.1| Prolyl-tRNA synthetase, bacterial [Xylella fastidiosa Dixon]
 gi|170730883|ref|YP_001776316.1| prolyl-tRNA synthetase [Xylella fastidiosa M12]
 gi|226701359|sp|B0U4A7|SYP_XYLFM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71164350|gb|EAO14064.1| Prolyl-tRNA synthetase, bacterial [Xylella fastidiosa Dixon]
 gi|167965676|gb|ACA12686.1| Proline--tRNA ligase [Xylella fastidiosa M12]
          Length = 564

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 113/223 (50%), Positives = 151/223 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+R+E
Sbjct: 1   MRLSEFHLHTTKEIPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM +PT+Q  +LW ES R++ +G ++L++ DR      Y PT EE +TD  R 
Sbjct: 61  MNRAGAVEMLLPTIQPRELWEESERWEKFGSQLLKIKDRKQAEYCYSPTAEEAVTDYVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+       Y  M  +
Sbjct: 121 ELTSYKQLPVNLYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLSDADLVREYENMRAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE  +  
Sbjct: 181 YTRIFTRLGLEFRSVQADSGAIGGDASQEFHVIADSGEDVLAF 223



 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/184 (34%), Positives = 95/184 (51%), Gaps = 2/184 (1%)

Query: 258 ATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             +D+ N    D ++   K   ARGIEVGH+F  G KY+  M AT     GK   + MG 
Sbjct: 380 VVADIRNVIEGDRAVDGGKICIARGIEVGHVFQLGRKYAEAMKATVLDEYGKAVTMTMGC 439

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+VAA IE +HD  GIIWP  +AP+++++  I    D V   A E + A L   
Sbjct: 440 YGIGVSRIVAAAIEQNHDVAGIIWPAPIAPWQVAVCVINPKKDPVIIAAAELLLAELQSA 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D   DD G + G  FA  +L+G P +++V  + ++    E + R T + E++    ++
Sbjct: 500 DVDTVLDDRGLRPGVMFADMELIGIPHRIVVSERGLAAGTYEYRARRTAMVENLDKTTLL 559

Query: 436 NYAS 439
               
Sbjct: 560 TRIK 563


>gi|325142550|gb|EGC64950.1| prolyl-tRNA synthetase [Neisseria meningitidis 961-5945]
 gi|325198486|gb|ADY93942.1| prolyl-tRNA synthetase [Neisseria meningitidis G2136]
          Length = 570

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 118/235 (50%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ S
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 234



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A      D+ N    D  P+   +   ARGIEVGH+F    KY+  M+ +F   +GK
Sbjct: 374 GRDAAEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGK 433

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +K
Sbjct: 434 SQIMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADK 493

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     +
Sbjct: 494 IYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQ 553

Query: 428 DMSLEEVINYASHRFS 443
            +++ E++   +   +
Sbjct: 554 AVAIGEIVARVTASLN 569


>gi|291521022|emb|CBK79315.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Coprococcus
           catus GD/7]
          Length = 585

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 154/442 (34%), Gaps = 34/442 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           L +L+E   RD       + L   M+     +G+  +LP G      +   I+E++ + G
Sbjct: 172 LQLLEEAKERDHRKIGKDMELF--MVDDLVGRGLPMFLPKGYTIWQELENYIKEKERKLG 229

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + + +L+  SG +D Y + M    + +D+A +  P +      I+ +   SY
Sbjct: 230 YQHVMTPCVGTVNLYKTSGHWDHYKENMFPAMEVDDEAFVLRPMNCPHHMMIYANKRHSY 289

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +I   FR E      G+ R R F   DA+   +TPE  K   +++       
Sbjct: 290 RDLPIRIGEIAHDFRYEASGTLKGIERGRHFCQNDAH-LFVTPEQIKDEISRVVDLIFST 348

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G+                  +     D  E          +    +     +++  
Sbjct: 349 YEDFGITDYRCVLSLRD-----PEDKAKYHDDDEM--------WNKAENALREVMNELGL 395

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +      A Y    DV    +  ++     +S   ++    F    K+      T+  
Sbjct: 396 EYTEEIGEAAFYGPKLDV---NVKPAVGNEITLSTCQLD----FCLPAKF----QLTYVD 444

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+     +     +G++    A I    +      P  +AP ++ ++ +K  D     
Sbjct: 445 KDGEMKTPVVLHRAILGSLDRFMAYIL---EETKGNLPTWLAPIQVKVMPVKTDDDDLNA 501

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I   L      V  DD  E++G +     +   P  +++G     +  V  +    
Sbjct: 502 YANEICELLEAQNVRVDLDDRAEKLGYRMREGQIQKVPYLLVIGFNEKDNRTVSYRLHGE 561

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                + L+E +        N 
Sbjct: 562 KDTTVVGLDEFVEKIVDEIKNK 583


>gi|227892831|ref|ZP_04010636.1| theronyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
 gi|227865333|gb|EEJ72754.1| theronyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
          Length = 645

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 153/433 (35%), Gaps = 34/433 (7%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      V   I + +   G   +  P L
Sbjct: 239 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYDHVYTPVL 296

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y  +M    D  D  M    P +      IF+ HI+SYR+LP    
Sbjct: 297 MNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIFKHHIRSYRDLPLRVA 356

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++    +  
Sbjct: 357 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQDE-FAKILKLIMDVYKDFDITD 415

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 416 YYFRLS-------------YRDPKNTEKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGE 462

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G DG++H  
Sbjct: 463 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLTYVGQDGEEHRP 511

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            M     G +  +   I    +     +P  +AP +  +I +   ++   +  EK+   L
Sbjct: 512 VMIHR--GIVGTMERFIAYLTEIYKGAFPTWLAPIQAEIIPVN--NEAHGEYAEKVRQEL 567

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +K G     DD  E++G +   +     P  +++G   +   KV ++   T      SL+
Sbjct: 568 AKRGFRAEVDDRNEKMGYKIRESQTQKVPYTLVLGDDEMKSGKVNVRRYGTDEEISKSLD 627

Query: 433 EVINYASHRFSNN 445
           + I        + 
Sbjct: 628 DFIKEIDADVKSY 640


>gi|161870212|ref|YP_001599382.1| prolyl-tRNA synthetase [Neisseria meningitidis 053442]
 gi|161595765|gb|ABX73425.1| prolyl-tRNA synthetase [Neisseria meningitidis 053442]
          Length = 599

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 118/235 (50%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ S
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDS 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 263



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A      D+ N    D  P+   +   ARGIEVGH+F    KY+  M+ +F   +GK
Sbjct: 403 GRDAAEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTKAMNVSFLDNNGK 462

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +K
Sbjct: 463 SQIMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADK 522

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     +
Sbjct: 523 IYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQ 582

Query: 428 DMSLEEVINYASHRFS 443
            +++ E++   +   +
Sbjct: 583 AVAIGEIVARVTASLN 598


>gi|312884352|ref|ZP_07744060.1| prolyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367982|gb|EFP95526.1| prolyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 571

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 116/237 (48%), Positives = 154/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPSGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E  +P +Q  +LW E+GR +  G E+LRL DR+D+  +  PT EEV+T + R+
Sbjct: 61  INNAGAVETLMPVVQPFELWEETGRSEKMGAELLRLNDRHDRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMRSREF M DAYSFD+  +G + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRSREFSMMDAYSFDIDKDGLQKSYEAMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y R F R+GL   P+ A++G IGG+ SHEF VLA++GE  +       D+    E  
Sbjct: 181 YCRAFDRMGLNYRPVLADTGAIGGNGSHEFHVLAESGEDLIAF-SSESDYAANIEKA 236



 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 110/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D     +   +  RGIEVGHIF  G  YS  M
Sbjct: 366 DDKHYFGINWGRDVELGQVEDLRNVVEGDPSPCGQGHLILKRGIEVGHIFQLGKNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +    G DGK+  ++MG YGIG  RVVAA IE +HD  GI  PD++APF+++++ +    
Sbjct: 426 NCGVLGPDGKNTILEMGCYGIGVTRVVAAAIEQNHDKFGISLPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  + A E +Y  L+ +G +V +DD  E+ G  F+  +L+G P  V++G + + +   E
Sbjct: 486 SEEVQQAAENLYRELTDLGVEVLFDDRKERPGVMFSDMELIGIPHTVVIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG +E +++ +++ +  ++ +
Sbjct: 546 YKNRRTGEKEAIAMADILGHLKNQLA 571


>gi|42526600|ref|NP_971698.1| threonyl-tRNA synthetase [Treponema denticola ATCC 35405]
 gi|73919840|sp|Q73NR2|SYT_TREDE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|41816793|gb|AAS11579.1| threonyl-tRNA synthetase [Treponema denticola ATCC 35405]
          Length = 585

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 157/441 (35%), Gaps = 38/441 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD       + L    I + + G   W P G      +   +R+     G
Sbjct: 174 YLAMLEEAEKRDHRRIGKAMNLF--HIDEENPGQIFWHPKGWTLYLTIQNYVRKRIKEDG 231

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG +  Y + M  + +   +     P +     +IF+  IKSY
Sbjct: 232 YLEVHTPFVMPRSLWERSGHWAKYKENMF-ITESEKRLFALKPMNCPGHVEIFKQGIKSY 290

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +     R+E      G+MR R F+  DA+ F    + S    +K      R+
Sbjct: 291 KDLPLRLAEFGSCTRNEPSGSLHGIMRIRGFVQDDAHIFCTEEQISSE-VSKFCALLKRM 349

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G                   + +V   T   Q        D    + +    D   
Sbjct: 350 YADFGF---------------AEDKILVKFSTRPEQRVGDDATWDRAEKALSDACADAGL 394

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK- 303
              I E   A Y    +     L D+L    +     ++           +  ++A +  
Sbjct: 395 KYEIAEGEGAFYGPKLEF---TLIDALGREWQCGTIQLDYQLP------SAERLNAEYIG 445

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             + K H V +    +G++     ++  +  G    W   V    + +           +
Sbjct: 446 DDNNKHHPVMLHRAVLGSLERFIGILIENCAGIMPPWLAPVQAVIVPVAP------AFNE 499

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+   L + G  V  D   +++ ++           Q+IVG   + ++ V ++ R  
Sbjct: 500 YAQKVQKVLDEKGFRVIADIGTDRMNAKIRKHQEEKVIYQLIVGQSEMDNNSVAVRMRKG 559

Query: 424 GIREDMSLEEVINYASHRFSN 444
           G ++ M+L+E I++   +  +
Sbjct: 560 G-QKVMTLDEFISFLKDKVDS 579


>gi|319410604|emb|CBY90973.1| prolyl-tRNA synthetase [Neisseria meningitidis WUE 2594]
          Length = 599

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 210 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANVE 263



 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A      D+ N    D  P+   +   ARGIEVGH+F    KY+  M+ +F   +GK
Sbjct: 403 GRDAAEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGK 462

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE ++D KGIIW  ++A F++ ++ +        R+A +K
Sbjct: 463 SQIMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMASFEVVIVPMNYKKSDTVREAADK 522

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     +
Sbjct: 523 IYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRDNEAQ 582

Query: 428 DMSLEEVINYASHRFS 443
            +++ E++   +   +
Sbjct: 583 AIAIGEIVARVTASLN 598


>gi|304387349|ref|ZP_07369541.1| proline--tRNA ligase [Neisseria meningitidis ATCC 13091]
 gi|304338600|gb|EFM04718.1| proline--tRNA ligase [Neisseria meningitidis ATCC 13091]
          Length = 599

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 210 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANVE 263



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A      D+ N    D  P+   +   ARGIEVGH+F    KY+  M+ +F   +GK
Sbjct: 403 GRDAAEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGK 462

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +K
Sbjct: 463 SQIMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADK 522

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     +
Sbjct: 523 IYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQ 582

Query: 428 DMSLEEVINYASHRFS 443
            +++ E++   +   +
Sbjct: 583 AVAIGEIVARVTASLN 598


>gi|227529941|ref|ZP_03959990.1| threonine--tRNA ligase [Lactobacillus vaginalis ATCC 49540]
 gi|227350126|gb|EEJ40417.1| threonine--tRNA ligase [Lactobacillus vaginalis ATCC 49540]
          Length = 601

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 154/441 (34%), Gaps = 36/441 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD  +  ++L L    +  +   G+  W+P G      +   I + +   G  
Sbjct: 189 KRQEAKERDHRVIGNQLDLF--FVDPKVGAGLPYWMPKGATIRRTIERYIIDREVADGYK 246

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + D +  SG ++ Y  +M    D  D  M    P +      I++ HI+SYR
Sbjct: 247 HVYTPVLMNLDAYKTSGHWEHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSYR 306

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++
Sbjct: 307 DLPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVTLDQIRSE-FAKILRLIMDVY 365

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +     R                       + + + +  +          DD+   
Sbjct: 366 KDFDITDYSFRLSLRD-------------PKNVKKYYANDEMWEKSQSMLKKAMDDLNLD 412

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G 
Sbjct: 413 YYEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLTYVGQ 461

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK+H    +    +G M    A +   + G    W             I  ++    + 
Sbjct: 462 DGKEHQPVMIHRGVVGTMERFIAYLTEIYKGAFPTWLAPEQVH-----IIPVNEDAHGEY 516

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  ++      V  D   E++G +   +     P  ++VG    +++ V ++     
Sbjct: 517 ADELAKKMKAANIRVVVDHRNEKMGYKIRESQTQKVPYTLVVGDDEKANNGVSVRKYGEK 576

Query: 425 IREDMSLEEVINYASHRFSNN 445
            + +MS +  +N      ++ 
Sbjct: 577 EQNEMSQDAFMNEILADIASY 597


>gi|167763511|ref|ZP_02435638.1| hypothetical protein BACSTE_01885 [Bacteroides stercoris ATCC
           43183]
 gi|167698805|gb|EDS15384.1| hypothetical protein BACSTE_01885 [Bacteroides stercoris ATCC
           43183]
          Length = 646

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 149/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGAALRIRLQEFLRRIQARY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++  
Sbjct: 289 DYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D    + +   D           +  +
Sbjct: 408 SIVFQSMHFENFEAQISLR--------------DKVNREKYIGSDENWEKAEQAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLKARVEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GAD + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  +++   L +       D+  E+IG +    ++   P  +IVG K   + +V ++
Sbjct: 557 KFNDYAQEVKDYLKRYDVRAIVDERNEKIGRKIRDNEMKRIPYMLIVGEKEAENREVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M  E+     +    N
Sbjct: 617 KQGEGDQGTMKFEDFAKKVNEEVQN 641


>gi|294852343|ref|ZP_06793016.1| threonyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
 gi|294820932|gb|EFG37931.1| threonyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
          Length = 683

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 152/445 (34%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      ++ L      +   G+  W   G K   N+ + +R   + 
Sbjct: 258 QAYLHMLEEAEKRDHRRLGREMDLF--HFQEEGAGVVFWHAKGWKMFQNLVSYMRRRLDS 315

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E++ P +    LW  SG +  Y   M ++        +D+     P +      IF
Sbjct: 316 HGYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHVQIF 375

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 376 KHGLKSYRDLPIKLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTEEQMAAECLRIN 435

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A++    V             E  
Sbjct: 436 -DLILSVYKDFGFEEITIKLSTRPEKRVGSDELWDRAESVMMTVL------------EQI 482

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 483 RQQSNNIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 533

Query: 298 MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G    K   V +     G+M     ++  +  G   +W   V     ++     
Sbjct: 534 --AFYIGADSEKKQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPVQVVVATIT---- 587

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++  A+L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 588 --SDADEYAKEAAAKLKAAGLQVVTDLRNEKINYKVREHSLQKVPVILVCGKREAEEKTV 645

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +E M+L+E I      
Sbjct: 646 NMRRLGSRDQESMTLDEAIARLCEE 670


>gi|325136158|gb|EGC58766.1| prolyl-tRNA synthetase [Neisseria meningitidis M0579]
          Length = 599

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 263



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A      D+ N    D  P+   +   ARGIEVGH+F    KY+  M+ +F   +GK
Sbjct: 403 GRDAAEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGK 462

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +K
Sbjct: 463 SQIMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADK 522

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     +
Sbjct: 523 IYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQ 582

Query: 428 DMSLEEVINYASHRFS 443
            +++ E++   +   +
Sbjct: 583 AVAIGEIVARVTALLN 598


>gi|325132465|gb|EGC55158.1| prolyl-tRNA synthetase [Neisseria meningitidis M6190]
          Length = 599

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 263



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A      D+ N    D  P+   +   ARGIEVGH+F    KY+  M+ +F   +GK
Sbjct: 403 GRDAAEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGK 462

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +K
Sbjct: 463 SQIMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDAVREAADK 522

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     +
Sbjct: 523 IYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQ 582

Query: 428 DMSLEEVINYASHRFS 443
            +++ E++   +   +
Sbjct: 583 AVAIGEIVARVTASLN 598


>gi|254673039|emb|CBA07634.1| Prolyl-tRNA synthetase [Neisseria meningitidis alpha275]
          Length = 599

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 263



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A      D+ N    D  P+   +   ARGIEVGH+F    KY+  M+ +F   +GK
Sbjct: 403 GRDAAEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTKAMNVSFLDNNGK 462

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +K
Sbjct: 463 SQIMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADK 522

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     +
Sbjct: 523 IYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQ 582

Query: 428 DMSLEEVINYASHRFS 443
            +++ E++   +   +
Sbjct: 583 AVAIGEIVARVTASLN 598


>gi|317476770|ref|ZP_07936013.1| threonyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906945|gb|EFV28656.1| threonyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
          Length = 646

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 149/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGAALRIRLQEFLRRIQARY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++  
Sbjct: 289 DYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D    + +   D           +  +
Sbjct: 408 SIVFQSMHFENFEAQISLR--------------DKVNREKYIGSDENWEKAEQAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLKAKVEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GAD + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  +++   L +       D+  E+IG +    ++   P  +IVG K   + +V ++
Sbjct: 557 KFNDYAQEVKDYLKRYDVRAIVDERNEKIGRKIRDNEMKRIPYMLIVGEKEAENREVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M  EE     +    N
Sbjct: 617 KQGEGDQGTMKFEEFAKKVNEEVQN 641


>gi|153802043|ref|ZP_01956629.1| prolyl-tRNA synthetase [Vibrio cholerae MZO-3]
 gi|124122402|gb|EAY41145.1| prolyl-tRNA synthetase [Vibrio cholerae MZO-3]
          Length = 571

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 115/237 (48%), Positives = 154/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 68/190 (35%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  GT YS  M+     ++GK+  ++M
Sbjct: 382 GKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +     +  + A EK+YA L+
Sbjct: 442 GCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E K+R  G +E +++E 
Sbjct: 502 AAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFEYKNRRQGEKEAVAMES 561

Query: 434 VINYASHRFS 443
           +I++   + +
Sbjct: 562 IIDFIQAKLA 571


>gi|229523326|ref|ZP_04412733.1| prolyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|229339689|gb|EEO04704.1| prolyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
          Length = 571

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 114/237 (48%), Positives = 153/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKTGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  GT YS  M+     ++GK+  ++M
Sbjct: 382 GKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +     +  + A EK+YA L+
Sbjct: 442 GCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E K+R +G +E +++  
Sbjct: 502 AAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFEYKNRRSGEKEAVAMAS 561

Query: 434 VINYASHRFS 443
           +I++   + +
Sbjct: 562 IIDFIQAKLA 571


>gi|206972654|ref|ZP_03233595.1| prolyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|206732411|gb|EDZ49592.1| prolyl-tRNA synthetase [Bacillus cereus AH1134]
          Length = 566

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 168/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + + + E+     A       E++
Sbjct: 240 ATYTKSDVAEKALEKVATPDQKAIEEV 266



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|304403794|ref|ZP_07385456.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304346772|gb|EFM12604.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 637

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 141/422 (33%), Gaps = 39/422 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              I +   RD      +L L   M  + + G+  +LP G    + + +  RE Q     
Sbjct: 235 LHRIEEAKKRDHRKLGKELGLF--MFSEEAPGMPFYLPKGMAIRNELESFAREIQRLRAY 292

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  +W +SG +D Y   M      ++      P +      I+++   SYR
Sbjct: 293 AEVRTPLMMNNRIWEQSGHWDHYKDNM-YFTQVDETKFALKPMNCPGHMLIYKNSRHSYR 351

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    +     R E      G+MR R F   DA+ F L  +  +     + +  +   
Sbjct: 352 ELPIRLSEFGQVHRHEFSGALSGMMRVRTFCQDDAHLFVLPSQIEEE--IGLVIELIGHI 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           + +   +  +   + P                      ++   D    S  +  D     
Sbjct: 410 YDVFGFAYKIELSTRP-----------------DDYMGAEALWDQAEQSLQSVLDARGIA 452

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
            +I E   A Y    D H   + D+L  + +     ++    F    K+      T+ G 
Sbjct: 453 YTINEGDGAFYGPKIDFH---ILDALQRSWQCGTIQLD----FQMPEKFD----LTYIGE 501

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           D   H   +    +     +   I    +     +P  +AP +  L+ +        D  
Sbjct: 502 DNLKHRPVVIHRAV--YGSIDRFIGILTEHYAGAFPLWLAPVQAKLLPV---SDQYLDDA 556

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
             +  +L + G     DD  E++G +   A L   P  +I+G        V ++ R    
Sbjct: 557 YAVKKQLEEAGIRAEVDDRNEKLGYKIREAQLEKTPYMLILGENERGSGSVSVRKRSGEE 616

Query: 426 RE 427
             
Sbjct: 617 LG 618


>gi|301055309|ref|YP_003793520.1| prolyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300377478|gb|ADK06382.1| prolyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 566

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKELEKVATPDQKAIEEV 266



 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|325205891|gb|ADZ01344.1| prolyl-tRNA synthetase [Neisseria meningitidis M04-240196]
          Length = 570

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANVE 234



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A      D+ N    D  P+   +   ARGIEVGH+F    KY+  M+ +F   +GK
Sbjct: 374 GRDAAEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGK 433

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +K
Sbjct: 434 SQVMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADK 493

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     +
Sbjct: 494 IYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQ 553

Query: 428 DMSLEEVINYASHRFS 443
            +++ E++   +   +
Sbjct: 554 AVAIGEIVARVTASLN 569


>gi|325144523|gb|EGC66822.1| prolyl-tRNA synthetase [Neisseria meningitidis M01-240013]
 gi|325208298|gb|ADZ03750.1| prolyl-tRNA synthetase [Neisseria meningitidis NZ-05/33]
          Length = 599

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANVE 263



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A      D+ N    D  P+   +   ARGIEVGH+F    KY+  M+ +F   +GK
Sbjct: 403 GRDAAEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGK 462

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +K
Sbjct: 463 SQVMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADK 522

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     +
Sbjct: 523 IYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQ 582

Query: 428 DMSLEEVINYASHRFS 443
            +++ E++   +   +
Sbjct: 583 AVAIGEIVARVTASLN 598


>gi|89075398|ref|ZP_01161815.1| prolyl-tRNA synthetase [Photobacterium sp. SKA34]
 gi|89048814|gb|EAR54384.1| prolyl-tRNA synthetase [Photobacterium sp. SKA34]
          Length = 571

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 121/278 (43%), Positives = 165/278 (59%), Gaps = 5/278 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAEI SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEIISHQLMLRAGMIRKLASGLYAWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHARPFVLSPTAEEVFTSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +       D+    E     
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAF-STESDYAANIEKA--- 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
           + ++      + T   +   D  N K  D L E   ++
Sbjct: 237 EALAPAHNNAEPTVELSV-IDTPNAKTIDELVEQHGIA 273



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 113/190 (59%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +      RGIEVGHIF  G  YS  M+     A+GK+  ++M
Sbjct: 382 GRVEDLRNVVEGDLSPCGKGTLQLKRGIEVGHIFQLGNAYSEKMNCGVLDANGKNAILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVA+ IE +HD  GIIWPD++APF +S++ +     +  ++A EK+YA L+
Sbjct: 442 GCYGIGVSRVVASAIEQNHDENGIIWPDALAPFHVSIVPMNMAKSEEVKEAAEKLYADLT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  FA  +LLG P  +++G++ + + ++E K+R TGI+E +++ +
Sbjct: 502 AAGIEVLFDDRKERPGVMFADHELLGIPHTIVIGNRSLENGEMEYKNRRTGIKEAVAVND 561

Query: 434 VINYASHRFS 443
           V+ +   + +
Sbjct: 562 VVTFLKQKMA 571


>gi|89098602|ref|ZP_01171484.1| prolyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89086564|gb|EAR65683.1| prolyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 568

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 115/252 (45%), Positives = 163/252 (64%), Gaps = 1/252 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P DAE+ SH+L+LR G I Q++ G+YS+LP+ +K L  + AI+REE
Sbjct: 1   MKQSMTLIPTLREVPADAEVRSHQLLLRAGFIRQNAAGVYSYLPMARKVLQKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P LQ A+LW ESGR+ +YG E++RL DRND+    G THEEV+T + R 
Sbjct: 61  MDDAGASELLMPALQQAELWQESGRWYTYGPELMRLKDRNDREFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E     Y+++F +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEQRPRFGILRGREFIMKDAYSFHSSQESLDEVYSRLFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFTRCGLNFRAVIADSGAMGGKDTHEFMVLSDIGEDTIAYSD-ASDYAANVEMAPVI 239

Query: 241 DIISLNSIVEQW 252
           +  + +    + 
Sbjct: 240 NAYAKSDAAPKE 251



 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/193 (34%), Positives = 111/193 (57%), Gaps = 3/193 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       A+GIEVGH+F  GT+YS  M+A +   +G+   + 
Sbjct: 377 VSQFADLRFIQEGDLSPDGNGKILFAKGIEVGHVFKLGTRYSEAMNAVYLDENGRTQPMI 436

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R++AA+ E  +D KG IWP  +APFK+ +I +   D+      E++Y  L 
Sbjct: 437 MGCYGIGVSRILAAIAEQYNDDKGFIWPADLAPFKVHVIAVNMKDEAQAGLGEELYKELR 496

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G +FA ADL+G P+++  G K  S+  VE+K R TG  E++  ++
Sbjct: 497 GNGYEVLFDDRPERAGVKFADADLIGLPVRITAGKK-ASEGIVEVKVRSTGEMEEIHKDQ 555

Query: 434 VINYASHRFSNNR 446
           ++ + +   ++ +
Sbjct: 556 LLEHIASILTSQK 568


>gi|308389457|gb|ADO31777.1| prolyl-tRNA synthetase [Neisseria meningitidis alpha710]
 gi|325130423|gb|EGC53187.1| prolyl-tRNA synthetase [Neisseria meningitidis OX99.30304]
 gi|325201951|gb|ADY97405.1| prolyl-tRNA synthetase [Neisseria meningitidis M01-240149]
          Length = 570

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 234



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A      D+ N    D  P+   +   ARGIEVGH+F    KY+  M+ +F   +GK
Sbjct: 374 GRDAAEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGK 433

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +K
Sbjct: 434 SQIMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADK 493

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     +
Sbjct: 494 IYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQ 553

Query: 428 DMSLEEVINYASHRFS 443
            +++ E++   +   +
Sbjct: 554 AVAIGEIVARVTALLN 569


>gi|261253697|ref|ZP_05946270.1| prolyl-tRNA synthetase [Vibrio orientalis CIP 102891]
 gi|260937088|gb|EEX93077.1| prolyl-tRNA synthetase [Vibrio orientalis CIP 102891]
          Length = 571

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 150/237 (63%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKSGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 111/206 (53%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D     +      RGIEVGHIF  G  YS  M
Sbjct: 366 DDKHYFGINWGRDVELGQVEDLRNVVEGDPSPCGQGTLQLKRGIEVGHIFQLGNTYSQAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +    G DGK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +    
Sbjct: 426 NCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R  G +  +++ +++ +   + +
Sbjct: 546 YKNRRNGEKTAVAMADIVEHIKAQLA 571


>gi|90580993|ref|ZP_01236794.1| prolyl-tRNA synthetase [Vibrio angustum S14]
 gi|90437871|gb|EAS63061.1| prolyl-tRNA synthetase [Vibrio angustum S14]
          Length = 571

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 119/277 (42%), Positives = 164/277 (59%), Gaps = 5/277 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN---- 236
           Y + F R+GL+  P+ A+SG IGG+ S EF VLA++GE  +       D+    E     
Sbjct: 181 YCKAFDRMGLEYRPVWADSGAIGGNGSQEFHVLAESGEDLIAF-STESDYAANIEKAEAL 239

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               D       +     P A T D   E+   ++ +
Sbjct: 240 APAHDRAEPTIELSVIDTPNAKTIDELVEQHGIAIEK 276



 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 114/190 (60%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  G  YS  M+     A+GK+  ++M
Sbjct: 382 GRVEDLRNVVEGDPSPCGQGTLMLKRGIEVGHIFQLGNAYSEKMNCGVLDANGKNTILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVA+ IE +HD  GIIWPD++APF +S++ +     +  ++A EK+YA L+
Sbjct: 442 GCYGIGVSRVVASAIEQNHDENGIIWPDALAPFHVSIVPMNMAKSEEVKEAAEKLYADLT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  FA  +LLG P  +++G++ + + ++E K+R TGI+E +++ +
Sbjct: 502 AAGIEVLFDDRKERPGVMFADHELLGVPHTIVIGNRSLENGEMEYKNRRTGIKEAVAVND 561

Query: 434 VINYASHRFS 443
           V+ +   + +
Sbjct: 562 VVAFLKQKMA 571


>gi|224370824|ref|YP_002604988.1| threonyl-tRNA synthetase [Desulfobacterium autotrophicum HRM2]
 gi|259516390|sp|C0QAP1|SYT_DESAH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|223693541|gb|ACN16824.1| ThrS2 [Desulfobacterium autotrophicum HRM2]
          Length = 636

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 85/445 (19%), Positives = 160/445 (35%), Gaps = 42/445 (9%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +++E   RD      ++ L +   HQ + G+  +   G +  + + A  R+E   
Sbjct: 225 KAYLHLIEEAKKRDHRKIGTRMGLFS--FHQEAAGMPFFHAKGMEMWNELLAYWRDEHRA 282

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E   P + S  LW +SG +++Y + M      + +     P +      ++++   
Sbjct: 283 AGYVETKTPVMMSRHLWEKSGHWENYRENMYTSV-VDGEEYAIKPMNCPGGMLLYKTESH 341

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +I L  R EL     G+ R R F   DA+ F +TPE  +     +     
Sbjct: 342 SYRDLPLRAGEIGLVHRHELSGALSGLFRVRAFHQDDAHIF-MTPEQIESEILGVLELVE 400

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RI+ R GL                   F +   T   +   S +             D  
Sbjct: 401 RIYSRFGLG------------------FHLELSTRPKKSIGSDEQWAEATNGLKNALDKY 442

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +I E   A Y    D+H   + D+L    +     +++                T+
Sbjct: 443 GQPYAINEGDGAFYGPKIDIH---IKDALGRTWQCGTVQLDMALP--------ERFDLTY 491

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           KGAD + H    +     G++     ++    +     +P  +AP +  ++ I       
Sbjct: 492 KGADNEKHRPIMIHRVIYGSIERFFGILV---EHFAGKFPLWLAPVQAVVLPIN---DDL 545

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +   L   G     D   E +  +   A +   PL + +G K      + ++  
Sbjct: 546 ADHAQTVKKELESNGIRCDVDLRTESLKKKIREAQVNYVPLIITIGEKEKESGTLSVRTL 605

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
              +R  +S+ + I          +
Sbjct: 606 DGKVRMGLSMADFIPPVLAHIRARQ 630


>gi|218235963|ref|YP_002368620.1| prolyl-tRNA synthetase [Bacillus cereus B4264]
 gi|226731428|sp|B7HDU2|SYP_BACC4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218163920|gb|ACK63912.1| proline--tRNA ligase [Bacillus cereus B4264]
          Length = 566

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 108/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++++EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVNVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|170744367|ref|YP_001773022.1| threonyl-tRNA synthetase [Methylobacterium sp. 4-46]
 gi|168198641|gb|ACA20588.1| threonyl-tRNA synthetase [Methylobacterium sp. 4-46]
          Length = 670

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 142/438 (32%), Gaps = 35/438 (7%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      ++ L      +   G+  W P G      + A +R    +  
Sbjct: 232 YLHRLEEAERRDHRRLGREMDLF--HFQEEGPGVVFWHPKGWTLFQELIAYMRRRL-KAD 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E++ P +    LW  SG +D Y + M      +++     P +      IF+  +KSY
Sbjct: 289 YREVNAPQILDKALWETSGHWDWYRENMFVTKTEDERVFAIKPMNCPGHVQIFKHGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G+MR R F   DA+ F    + +           L  
Sbjct: 349 RDLPLRLAEFGAVSRYEPSGALHGLMRVRAFTQDDAHVFCTEAQLAAECLKIN-DLILST 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P     S      A+   T+V            SE  +      
Sbjct: 408 YADFGFDEIVVKLSTRPEKRVGSDALWDHAEAVMTRVL-----------SEIEEQSGGRI 456

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +I     A Y    +     L D++  + +     ++      FG        A +  
Sbjct: 457 RTAINPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVDFNLPERFG--------AFYVD 505

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+      +     G+M   A ++     G   +W   +     ++            
Sbjct: 506 ADGQKKTPVMVHRAICGSMERFAGILIEHFAGHFPLWLAPLQVVVATIT------SDADP 559

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               + A     G     D   E+I  +         P+ ++VG +   +  V I+   +
Sbjct: 560 YASDVLAACEAAGLRAEIDLRNEKINYKVREHSHAKVPVMLVVGRREGEERTVSIRRLGS 619

Query: 424 GIREDMSLEEVINYASHR 441
                + L++ +      
Sbjct: 620 QQTRTLPLDQALADLVGE 637


>gi|153216557|ref|ZP_01950520.1| prolyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|153830554|ref|ZP_01983221.1| prolyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|124114232|gb|EAY33052.1| prolyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|148873952|gb|EDL72087.1| prolyl-tRNA synthetase [Vibrio cholerae 623-39]
          Length = 571

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 114/237 (48%), Positives = 153/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  GT YS  M+     ++GK+  ++M
Sbjct: 382 GKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +     +  + A EK+YA L+
Sbjct: 442 GCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E K+R +G +E +++  
Sbjct: 502 AAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFEYKNRRSGEKEAVAMAS 561

Query: 434 VINYASHRFS 443
           +I++   + +
Sbjct: 562 IIDFIQAKLA 571


>gi|325204335|gb|ADY99788.1| prolyl-tRNA synthetase [Neisseria meningitidis M01-240355]
          Length = 570

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 116/235 (49%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ Y KE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYXKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 234



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A      D+ N    D  P+   +   ARGIEVGH+F    KY+  M+ +F   +GK
Sbjct: 374 GRDAAEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTKAMNVSFLDNNGK 433

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +K
Sbjct: 434 SQIMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADK 493

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     +
Sbjct: 494 IYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQ 553

Query: 428 DMSLEEVINYASHRFS 443
            +++ E++   +   +
Sbjct: 554 AVAIGEIVARVTASLN 569


>gi|238922273|ref|YP_002935787.1| threonyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
 gi|238873945|gb|ACR73653.1| threonyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
          Length = 591

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 73/437 (16%), Positives = 157/437 (35%), Gaps = 33/437 (7%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
              RD      ++ L   M      +G+  +LP G      +   I++++ + G + +  
Sbjct: 178 AKERDHRKIGKEMELF--MSDDLIGRGLPMFLPKGYTVWQELENYIKDKERKLGYLHVMT 235

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + + +L+  SG +D Y + M    +   ++ +  P +      I+ + + SY++LP  
Sbjct: 236 PCVGTVNLYKTSGHWDHYKENMFPAMEVEGESFVLRPMNCPHHMMIYANKMHSYKDLPIR 295

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             +I   FR E      G+ R R F   DA+   +TPE  +  + K+       +    +
Sbjct: 296 IGEIAHDFRFEASGTLKGIERGRHFCQNDAH-LFVTPEQIESEFAKVVDLIFETYKDFNI 354

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                             + +   D  E          +    +     +DI    +   
Sbjct: 355 TDYRCVLSLRD-----PEDKVKYHDDDEM--------WNNAENALRKVLNDIGIEYTEEI 401

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    DV    +  ++     +S   ++    F   +K+    + T+   DG+  
Sbjct: 402 GEAAFYGPKLDV---NVKPAIGNEYTLSTCQLD----FCLPSKF----NLTYIDKDGQRK 450

Query: 311 YVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              +     +G++    A I    +      P  +AP + +++ +K  D+        +Y
Sbjct: 451 TPVVLHRAILGSLDRFMAYIL---EETKGNLPLWLAPVQATILPVKNEDEELNAYAHGLY 507

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L+  G  V  D+  E++G +   A +   P  +++G    +D  V  +         +
Sbjct: 508 DYLADNGIRVEIDERAEKLGYRVREAQVKKIPYLIVLGKNEAADGTVSYRLHGEQKSTTV 567

Query: 430 SLEEVINYASHRFSNNR 446
           S +E +       +  +
Sbjct: 568 SKDEFVAMLKDEIATKK 584


>gi|304389414|ref|ZP_07371377.1| threonine--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304327224|gb|EFL94459.1| threonine--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 669

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 64/457 (14%), Positives = 135/457 (29%), Gaps = 47/457 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD     ++L L +    +   G+  + P G      +    R    
Sbjct: 245 LKEYVTRMAEAAKRDHRRLGNELDLFS-FPEEIGSGLAVFHPKGAMVRMEMENYSRRRHL 303

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTH 110
             G   +  P +    L+  SG  + Y   M                 +        P +
Sbjct: 304 EEGYSFVYTPHVTKGQLFETSGHLEWYKDGMFPPMRVDEECDDQGNVTKEGFDYYLKPMN 363

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
             +   I++S  +SYR LP   ++    +R E      G+ R R F   D++ +    + 
Sbjct: 364 CPMHNLIYKSRSRSYRELPLRLFEFGTVYRYEKSGVVHGLTRGRGFTQDDSHIYCTREQM 423

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                  +    L +    GL    +   +                    +   S +  +
Sbjct: 424 KDELTK-LLTFVLDLLKDYGLDDFYLELST----------------KNPHKFVGSDEIWE 466

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
               +                +  A Y       + +  D++    ++S   ++    F 
Sbjct: 467 EATNTLAEVATASGLELVPDPEGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FN 519

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
              ++ L  +A       +   V +     G++     V+   + G    W         
Sbjct: 520 LPERFDLEYTAA---DGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW------LAP 570

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
             + +    +   D CE I  RL      V  D   ++ G +   A     P  +I G +
Sbjct: 571 VQVRLVPVAEAFNDYCEDIANRLRAENVRVEVDTTDDRFGKKIRNAAKDKIPFTLIAGGE 630

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
               + V  ++R    +  + +++ I        + R
Sbjct: 631 DAEANAVSFRYRGGEQKNGVPIDQAIAEILEVIRSRR 667


>gi|115375454|ref|ZP_01462714.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|115367497|gb|EAU66472.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 616

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 131/441 (29%), Gaps = 42/441 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L     H  + G   W P G      ++  +R     T
Sbjct: 210 EYLTRIEESKKRDHRKLGKELDLF--HFHPFAPGSAFWSPKGTTLYQTLSQWMRRLTAET 267

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN--DKAMIYGPTHEEVMTDIFRSHI 122
           G +E+  P + +  LW  SG +  Y + M  + D    +      P +       F    
Sbjct: 268 GYVEIKTPLMFNKGLWEASGHWGKYKENMFLVLDNESGEHDFSLKPMNCPSHHLYFGFKR 327

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP   +   +  R+E      G+ R R+F   DA+ +    +       + FV  
Sbjct: 328 HSYRDLPLRLHTQDVLHRNEAAGSLGGLTRVRQFAQDDAHIYCTEDQIGDE--VRRFVKL 385

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L   +         +  + P                           D    +       
Sbjct: 386 LDHVYNAVGLKYSAKFSTRPEQR-----------------LGEDALWDRAESALEGVLKT 428

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     +     A Y    D     + DS+        R  ++G I       +      
Sbjct: 429 LGVPYEVKPGEGAFYGPKIDFD---VSDSIG-------RKWQLGTI-QLDYLAAQRFDLK 477

Query: 302 FKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G D  +H   +      G+     A++     G    W             +      
Sbjct: 478 YIGEDNAEHRPVVLHRAIYGSFERFIAILIEHFAGAFPAW------LAPIQAVLVTVADR 531

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   K+  +L   G  V  DD G+ + ++     +   P  +++G   V    V  + 
Sbjct: 532 QLDYARKVRDQLRAKGFRVELDDRGQSLNAKIREWQIQKLPFTLVIGDNEVEAGGVAPRR 591

Query: 421 RLTGIREDMSLEEVINYASHR 441
                 + M LE+     S  
Sbjct: 592 YGGEDLKSMKLEDFEALLSKE 612


>gi|281203096|gb|EFA77297.1| threonyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 716

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 152/437 (34%), Gaps = 40/437 (9%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD         L     H +S G   +LP G +  + +   IR E +R G  E+
Sbjct: 316 MKEAALRDHRNVGKNQELF--FFHPYSPGCAFFLPHGTRIYNRLVEFIRHEYHRRGFTEV 373

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             PT+ S  LW ESG +  YG+ M  L   +D+     P +      +F +  +SYR LP
Sbjct: 374 ITPTMFSQQLWEESGHWAKYGENMFNLK-CDDQNYSLKPMNCPSHCLMFGNRSRSYRELP 432

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F    +  R+EL     G+ R R+F   DA+ F  TP+  +   +        ++   
Sbjct: 433 IRFADFGVLHRNELAGALTGLTRVRKFQQDDAHIFC-TPDMVEQEISSCLEFMQHVYGIF 491

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G                   EF +   T       +    D    S     +       +
Sbjct: 492 G------------------FEFQLELSTRPDNHLGTAAQWDVAENSLRDALNKFGKPWKL 533

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    D+   ++FD L    + +   ++    F    ++ L    +      +
Sbjct: 534 NPGDGAFYGPKIDI---QIFDVLKRAHQCATIQLD----FQLPIRFELEYMGSGPEERHR 586

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              +     G    R++A +IE +                          +   D  + +
Sbjct: 587 PVIIHRAILGS-VERMMAILIEHTAGKWPFWVSPRQVLVATV-------SEKFADYAKSV 638

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L+  G     D   + +  +   A L  +   ++VG + ++++ V ++ R   +R  
Sbjct: 639 TKTLTDAGFYADVDLSDKTLPKKVREAQLSQYNYILVVGEEELNNNTVNVRTRDNVVRGS 698

Query: 429 MSLEEVINYASHRFSNN 445
           ++++ +I       +N 
Sbjct: 699 ITVDALIEEFK--LNNK 713


>gi|254805135|ref|YP_003083356.1| Prolyl-tRNA synthetase [Neisseria meningitidis alpha14]
 gi|254668677|emb|CBA06388.1| Prolyl-tRNA synthetase [Neisseria meningitidis alpha14]
          Length = 570

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 234



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A      D+ N    D  P+   +   ARGIEVGH+F    KY+  M+ +F   +GK
Sbjct: 374 GRDAAEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGK 433

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +K
Sbjct: 434 SQIMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADK 493

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     +
Sbjct: 494 IYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQ 553

Query: 428 DMSLEEVINYASHRFS 443
            +++ E++   +   +
Sbjct: 554 AVAIGEIVARVTALLN 569


>gi|269214916|ref|ZP_05987412.2| proline--tRNA ligase [Neisseria lactamica ATCC 23970]
 gi|269208774|gb|EEZ75229.1| proline--tRNA ligase [Neisseria lactamica ATCC 23970]
          Length = 625

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 121/273 (44%), Positives = 170/273 (62%), Gaps = 5/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 56  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 115

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR+  YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 116 MARAGSVELLMPVVQPAELWQESGRWKFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 175

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 176 EVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYQDMYDA 235

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E     
Sbjct: 236 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIELAPTL 294

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            +    +  +             N K  DSL +
Sbjct: 295 PLKGERAAAQAELV----KVHTPNVKTIDSLVD 323



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A      D+ N    D  P+   +   ARGIEVGH+F    KY+  M+ +F   +GK
Sbjct: 429 GRDAAEPEFVDLRNVVEGDESPDGQARLKLARGIEVGHVFQLRDKYTKAMNVSFLDNNGK 488

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +K
Sbjct: 489 SQIMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADK 548

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     +
Sbjct: 549 IYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRENEAQ 608

Query: 428 DMSLEEVINYASHRFS 443
            +++ E++   +   +
Sbjct: 609 AVAIGEIVARVTASLN 624


>gi|261392382|emb|CAX49924.1| prolyl-tRNA synthetase (proline--tRNA ligase; ProRS; global RNA
           synthesis factor) [Neisseria meningitidis 8013]
          Length = 570

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANVE 234



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A      D+ N    D  P+   +   ARGIEVGH+F    KY+  M+ +F   +GK
Sbjct: 374 GRDAAEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGK 433

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +K
Sbjct: 434 SQIMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADK 493

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G     ++LLG P ++++G + + +S VE   R     +
Sbjct: 494 IYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKESNVEYAERRNNEAQ 553

Query: 428 DMSLEEVINYASHRFS 443
            +++ E++   +   +
Sbjct: 554 AVAIGEIVARVTASLN 569


>gi|329954516|ref|ZP_08295607.1| threonine--tRNA ligase [Bacteroides clarus YIT 12056]
 gi|328527484|gb|EGF54481.1| threonine--tRNA ligase [Bacteroides clarus YIT 12056]
          Length = 646

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 149/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGAALRIRLQEFLRRIQARY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++  
Sbjct: 289 DYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D    + +   D           +  +
Sbjct: 408 SIVFQSMHFENFEAQISLR--------------DKVNREKYIGSDENWEKAEQAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLKAKVEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GAD + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  +++   L +       D+  E+IG +    ++   P  +IVG K   + +V ++
Sbjct: 557 KFNDYAQEVKDYLKRYDVRAIVDERNEKIGRKIRDNEMKRIPYMLIVGEKEAENREVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M  E+     +    N
Sbjct: 617 KQGEGDQGTMKFEDFAKKVNEEVQN 641


>gi|228922573|ref|ZP_04085873.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837002|gb|EEM82343.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 566

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 121/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMIFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL++ GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSEVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALKKVATPDQKAIEEV 266



 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 74/185 (40%), Positives = 105/185 (56%), Gaps = 3/185 (1%)

Query: 261 DVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YG
Sbjct: 383 DLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L + G +
Sbjct: 443 IGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYE 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y 
Sbjct: 503 VLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYI 561

Query: 439 SHRFS 443
           ++   
Sbjct: 562 ANILK 566


>gi|153824641|ref|ZP_01977308.1| prolyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|149741859|gb|EDM55888.1| prolyl-tRNA synthetase [Vibrio cholerae MZO-2]
          Length = 571

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 114/237 (48%), Positives = 153/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/190 (34%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  GT YS  M+     ++GK+  ++M
Sbjct: 382 GKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +     +  + A E++YA L+
Sbjct: 442 GCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHKSERVQQAAEQLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E K+R +G +E +++  
Sbjct: 502 AAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFEYKNRRSGEKEAVAMAS 561

Query: 434 VINYASHRFS 443
           +I++   + +
Sbjct: 562 IIDFIHAKLA 571


>gi|30690426|ref|NP_198035.2| threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)
           [Arabidopsis thaliana]
 gi|27735258|sp|O04630|SYTM_ARATH RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; Flags:
           Precursor
 gi|332006227|gb|AED93610.1| threonyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 709

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 158/442 (35%), Gaps = 39/442 (8%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E  + D  +   K  L     HQ S G Y +LPLG +  + +   I+ +
Sbjct: 300 KQLKKYLQFLEEAKKYDHRLLGQKQELF--FSHQLSPGSYFFLPLGTRVYNRLMDFIKNQ 357

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + + +LW  SG  D+Y   M    +   +     P +      IF+ 
Sbjct: 358 YWHRGYTEVITPNMYNMELWQTSGHADNYKDNMFTF-NIEKQEFGLKPMNCPGHCLIFQH 416

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR LP       +  R+E      G+ R R F   DA+ F  T +        +  
Sbjct: 417 RVRSYRELPMRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTTEQVKGE-VQGVLE 475

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G     ++  + P                  +     +  D          
Sbjct: 476 FIDYVYKVFGFTY-ELKLSTRP-----------------EKYLGDLETWDKAEADLKEAI 517

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +       + E   A Y    D+    + D++    + +   ++    F    +++L  +
Sbjct: 518 EAFGKPLVLNEGDGAFYGPKIDI---TVSDAMNRKFQCATLQLD----FQLPIRFNLEYA 570

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A       K   V +    +G++  + A++    +     WP  ++P +  +  I    Q
Sbjct: 571 AE--DEAKKSRPVMIHRAVLGSVERMFAILL---EHYKGKWPFWISPRQAIVCPISEKSQ 625

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 EK+  ++   G  V  D    +I  +   A L  +   ++VG    +  +V ++
Sbjct: 626 ---QYAEKVQKQIKDAGFYVDADLTDRKIDKKVREAQLAQYNYILVVGETEAATGQVSVR 682

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R        S+E+++     +
Sbjct: 683 VRDNAAHSVKSIEDLLEEFKAK 704


>gi|229047505|ref|ZP_04193095.1| Prolyl-tRNA synthetase [Bacillus cereus AH676]
 gi|229081074|ref|ZP_04213584.1| Prolyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|229111290|ref|ZP_04240843.1| Prolyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|229191988|ref|ZP_04318958.1| Prolyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228591539|gb|EEK49388.1| Prolyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228672066|gb|EEL27357.1| Prolyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228702118|gb|EEL54594.1| Prolyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|228723752|gb|EEL75107.1| Prolyl-tRNA synthetase [Bacillus cereus AH676]
          Length = 566

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|218259669|ref|ZP_03475318.1| hypothetical protein PRABACTJOHN_00977 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224962|gb|EEC97612.1| hypothetical protein PRABACTJOHN_00977 [Parabacteroides johnsonii
           DSM 18315]
          Length = 651

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 151/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L T        G+  WLP G +    +   ++  Q + 
Sbjct: 230 EYLALMEEAKKRDHRKIGKELELFT-FSTAVGAGLPLWLPRGTQLRLKLEDFLKRIQKKY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G  ++  P +    L+V SG Y  YGK+  +     +  +  +  P +     +IF+S  
Sbjct: 289 GYQQVMTPHIGGKQLYVTSGHYAKYGKDSFQPIHTPQEGEEFLLKPMNCPHHCEIFKSFP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP  F +    +R E      G+ R R F   DA+ F    +     + K+    
Sbjct: 349 RSYKDLPLRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFCRPDQLKDE-FLKVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             IF  L  ++   +                  D      +   +       S   +   
Sbjct: 408 FIIFKALDFENFEAQISLR--------------DKVNRDKYIGSEENWEKAESAIIEACQ 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLKAKIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFEL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G D K H    +     G+M    AV+     GK  +W           ++I    +
Sbjct: 503 EYTGEDNKKHRPVMIHRAPFGSMERFVAVLIEHTGGKFPLW------LTPDQVSILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L      V  DD  E+IG +    +L   P  +IVG K   +++V ++
Sbjct: 557 KFNDYAYEVKRQLEAEDLSVLVDDRNEKIGRKIRDTELKRIPYMLIVGEKEAENNEVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M +             
Sbjct: 617 KQGEGDKGSMKIATFAALLKGEIEE 641


>gi|196036918|ref|ZP_03104302.1| prolyl-tRNA synthetase [Bacillus cereus W]
 gi|195990473|gb|EDX54457.1| prolyl-tRNA synthetase [Bacillus cereus W]
          Length = 566

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKELEKVATPDQKAIEEV 266



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|121635048|ref|YP_975293.1| prolyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|152112936|sp|A1KUG4|SYP_NEIMF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|120866754|emb|CAM10507.1| prolyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|325138239|gb|EGC60808.1| prolyl-tRNA synthetase [Neisseria meningitidis ES14902]
          Length = 570

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 163/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 234



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A      D+ N    D  P+   +   ARGIEVGH+F    KY+  M+ +F   +GK
Sbjct: 374 GRDAAEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGK 433

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +K
Sbjct: 434 SQIMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDAVREAADK 493

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     +
Sbjct: 494 IYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQ 553

Query: 428 DMSLEEVINYASHRFS 443
            +++ E++   +   +
Sbjct: 554 AVAIGEIVARVTASLN 569


>gi|323144099|ref|ZP_08078739.1| proline--tRNA ligase [Succinatimonas hippei YIT 12066]
 gi|322416114|gb|EFY06808.1| proline--tRNA ligase [Succinatimonas hippei YIT 12066]
          Length = 593

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 130/235 (55%), Positives = 156/235 (66%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+ENP +A + SH+LMLR G+I Q + GIY WLP G + L  V  IIREE
Sbjct: 22  MRTSKYLLSTLKENPVEAAVVSHRLMLRAGLIRQIASGIYVWLPTGMRVLQKVEKIIREE 81

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q ADLW ESGRY+ YG E+ RL DR     + GPTHEEV+T I R 
Sbjct: 82  LNRAGAIELFMPFVQPADLWKESGRYEKYGPELCRLKDRKKNEFVLGPTHEEVITAIARR 141

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKS R LP   YQIQ KFRDE+RPRFGVMR REF+MKDAYSF +     + +Y  M+ +
Sbjct: 142 EIKSARQLPINLYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFHIDHASLEKTYKDMYDA 201

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLAD GE  +  S    D+    E
Sbjct: 202 YSRIFTRLGLDFRPVEADNGSIGGSSSHEFQVLADAGEDTIVFSDK-SDYAANIE 255



 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/193 (40%), Positives = 117/193 (60%), Gaps = 3/193 (1%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
             P    +D+ N +  +  P+ +      +GIEVG +F  GTKYS  M AT  G DGK  
Sbjct: 401 DVPNYEVADLRNVEEGEPSPDGQGTLHLRKGIEVGQVFMLGTKYSESMGATVLGEDGKPI 460

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIY 369
            +QMG YGIG  RV+AA IE  HD KGIIWPDS+APF+++++ IK    Q  R+A EK+Y
Sbjct: 461 NMQMGCYGIGVTRVIAAAIEQHHDDKGIIWPDSMAPFQVAIVAIKPNKSQAVREAAEKLY 520

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A L   G +V +DD  E+ G  FA  +L+G P  + +G + ++   VE K R TG +E++
Sbjct: 521 AELEAKGVEVLYDDRDERPGVMFADMELIGIPHVITIGDRGLAAGSVEYKSRKTGQKEEV 580

Query: 430 SLEEVINYASHRF 442
           S+++++++   + 
Sbjct: 581 SVDKILDFVCAKL 593


>gi|228935133|ref|ZP_04097960.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824498|gb|EEM70303.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 566

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNYRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKELEKVATPDQKAIEEV 266



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|30263823|ref|NP_846200.1| prolyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47529247|ref|YP_020596.1| prolyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186669|ref|YP_029921.1| prolyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|65321146|ref|ZP_00394105.1| COG0442: Prolyl-tRNA synthetase [Bacillus anthracis str. A2012]
 gi|118479041|ref|YP_896192.1| prolyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|165872601|ref|ZP_02217232.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167635829|ref|ZP_02394138.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167639857|ref|ZP_02398126.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170687854|ref|ZP_02879068.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170706810|ref|ZP_02897268.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177652150|ref|ZP_02934696.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190568409|ref|ZP_03021316.1| prolyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|196042144|ref|ZP_03109427.1| proline--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|196044700|ref|ZP_03111935.1| prolyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|218904947|ref|YP_002452781.1| prolyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225865800|ref|YP_002751178.1| prolyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|227813273|ref|YP_002813282.1| prolyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|228916456|ref|ZP_04080022.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228928867|ref|ZP_04091899.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947538|ref|ZP_04109828.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229092859|ref|ZP_04223993.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|229123332|ref|ZP_04252536.1| Prolyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|229186058|ref|ZP_04313228.1| Prolyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|229602364|ref|YP_002868057.1| proline--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254683474|ref|ZP_05147334.1| prolyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254721995|ref|ZP_05183784.1| prolyl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|254735857|ref|ZP_05193563.1| prolyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254739617|ref|ZP_05197311.1| prolyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254756010|ref|ZP_05208041.1| prolyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254759329|ref|ZP_05211354.1| prolyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|81583682|sp|Q81WL6|SYP1_BACAN RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|152074739|sp|A0RHJ2|SYP1_BACAH RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|226731426|sp|B7JJ97|SYP_BACC0 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782882|sp|C3P5M1|SYP_BACAA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782883|sp|C3L7A8|SYP_BACAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782884|sp|C1EP43|SYP_BACC3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|30258467|gb|AAP27686.1| proline--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47504395|gb|AAT33071.1| prolyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180596|gb|AAT55972.1| prolyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|118418266|gb|ABK86685.1| proline--tRNA ligase [Bacillus thuringiensis str. Al Hakam]
 gi|164711633|gb|EDR17179.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167512258|gb|EDR87635.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167528786|gb|EDR91544.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170128228|gb|EDS97097.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170668170|gb|EDT18919.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172082519|gb|EDT67584.1| prolyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190560413|gb|EDV14391.1| prolyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|196024735|gb|EDX63407.1| prolyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|196026996|gb|EDX65620.1| proline--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|218535709|gb|ACK88107.1| prolyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225789269|gb|ACO29486.1| proline--tRNA ligase [Bacillus cereus 03BB102]
 gi|227007610|gb|ACP17353.1| proline--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|228597477|gb|EEK55127.1| Prolyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|228660108|gb|EEL15744.1| Prolyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228690481|gb|EEL44264.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|228812058|gb|EEM58389.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228830674|gb|EEM76279.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843035|gb|EEM88117.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229266772|gb|ACQ48409.1| proline--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 566

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKELEKVATPDQKAIEEV 266



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|325128468|gb|EGC51349.1| prolyl-tRNA synthetase [Neisseria meningitidis N1568]
          Length = 570

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 234



 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A      D+ N    D  P+   +   ARGIEVGH+F    KY+  M+ +F   +GK
Sbjct: 374 GRDAAEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGK 433

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +K
Sbjct: 434 SQIMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADK 493

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     +
Sbjct: 494 IYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQ 553

Query: 428 DMSLEEVINYASHRFS 443
            +++ E++   +   +
Sbjct: 554 AVAIGEIVARVTASLN 569


>gi|323705637|ref|ZP_08117211.1| prolyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535114|gb|EGB24891.1| prolyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 570

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 116/265 (43%), Positives = 167/265 (63%), Gaps = 1/265 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P ++E P +AEI SH LML+  M+ + + G+Y +LPLG++ L  +  I+REE
Sbjct: 1   MRLSQLFIPTMREVPAEAEIPSHILMLKAAMMRKLASGVYIYLPLGKRVLKKIEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +  +  A+L  ESGR+D +G EM +L DRND+    GPTHEEV TD+ R+
Sbjct: 61  MDRAGAQEVLMSAIIPAELLKESGRWDVFGPEMFKLKDRNDREFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP T YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD+  +G   S++KM+ +
Sbjct: 121 DVKSYRQLPLTIYQIQTKYRDERRPRFGVMRSREFIMKDAYSFDVDWDGLDVSFDKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK   + A++G +GG  S EF+V ++ GE  +    +   +    E  +  
Sbjct: 181 YCRIFDRCGLKYTVVEADTGAMGGKDSKEFMVTSNVGEAVIAYCDNC-GYAANEEKAECT 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
              +++  +      Y       +E
Sbjct: 240 VQNTIDEEMRPLEKIYTPDVKTIDE 264



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 76/190 (40%), Positives = 104/190 (54%), Gaps = 3/190 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             SDV      D  P+        RGIEVGHIF  GTKYS  + A +   +G +  + MG
Sbjct: 381 VVSDVRKVVDGDKCPKCGSPLKLDRGIEVGHIFKLGTKYSDALGANYIDENGNEKPIIMG 440

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+ AA IE +HD KGIIWP S+AP+ + ++ +   + V RD  EK+Y  LSK 
Sbjct: 441 CYGIGLNRIAAAAIEQNHDDKGIIWPMSIAPYHVIIVPVNVSNDVQRDLAEKLYDELSKA 500

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD   + G +F  ADLLG P+++ VG K   D+ VE+K R      ++  +EV+
Sbjct: 501 GIEVLIDDRDLRAGVKFNDADLLGIPIRITVGKK-AEDNIVELKLRREEKPIELKYDEVL 559

Query: 436 NYASHRFSNN 445
                  S N
Sbjct: 560 GKVKELISEN 569


>gi|3617770|emb|CAA74705.1| threonyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 709

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 158/442 (35%), Gaps = 39/442 (8%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E  + D  +   K  L     HQ S G Y +LPLG +  + +   I+ +
Sbjct: 300 KQLKKYLQFLEEAKKYDHRLLGQKQELF--FSHQLSPGSYFFLPLGTRVYNRLMDFIKNQ 357

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + + +LW  SG  D+Y   M    +   +     P +      IF+ 
Sbjct: 358 YWHRGYTEVITPNMYNMELWQTSGHADNYKDNMFTF-NIEKQEFGLKPMNCPGHCLIFQH 416

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR LP       +  R+E      G+ R R F   DA+ F  T +        +  
Sbjct: 417 RVRSYRELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTTEQVKGE-VQGVLE 475

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G     ++  + P                  +     +  D          
Sbjct: 476 FIDYVYKVFGFTY-ELKLSTRP-----------------EKYLGDLETWDKAEADLKEAI 517

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +       + E   A Y    D+    + D++    + +   ++    F    +++L  +
Sbjct: 518 EAFGKPLVLNEGDGAFYGPKIDI---TVSDAMNRKFQCATLQLD----FQLPIRFNLEYA 570

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A       K   V +    +G++  + A++    +     WP  ++P +  +  I    Q
Sbjct: 571 AE--DEAKKSRPVMIHRAVLGSVERMFAILL---EHYKGKWPFWISPRQAIVCPISEKSQ 625

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 EK+  ++   G  V  D    +I  +   A L  +   ++VG    +  +V ++
Sbjct: 626 ---QYAEKVQKQIKDAGFYVDADLTDRKIDKKVREAQLAQYNYILVVGETEAATGQVSVR 682

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R        S+E+++     +
Sbjct: 683 VRDNAAHSVKSIEDLLEEFKAK 704


>gi|254932366|ref|ZP_05265725.1| prolyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|293583922|gb|EFF95954.1| prolyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|328475041|gb|EGF45829.1| prolyl-tRNA synthetase [Listeria monocytogenes 220]
 gi|332311762|gb|EGJ24857.1| Prolyl-tRNA synthetase [Listeria monocytogenes str. Scott A]
          Length = 568

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 124/294 (42%), Positives = 167/294 (56%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S    D+   +E     
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSD-ASDYAANTEMAPVL 239

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                   L   +E+   P   +     E L   + +  +     ++   I   
Sbjct: 240 YMEKKSHELEKDMEKVATPDQKSIADIVEFLEVPIEKTMKSMLYQVDDEVIMVL 293



 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 101/180 (56%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 383 DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G +W   ++PF + LI +    +      E +Y+ L   G  
Sbjct: 443 IGVSRILSAIAEQSNDENGFVWDKQISPFDLHLIPVNVKSEEQVAFAETLYSSLQDAGFS 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N  
Sbjct: 503 VLIDDRAERAGVKFADADLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTL 561


>gi|303237224|ref|ZP_07323794.1| threonine--tRNA ligase [Prevotella disiens FB035-09AN]
 gi|302482611|gb|EFL45636.1| threonine--tRNA ligase [Prevotella disiens FB035-09AN]
          Length = 649

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 151/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD       + L      +  KG+  WLP G +    +  ++R+ Q   
Sbjct: 232 EYLVMLEEAKKRDHRKIGKDMELFM-FSERVGKGLPIWLPKGTQVRLRLQEVLRKLQRPY 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P +   +L+V SG Y  YGK+  +        +  +  P +     +IF    
Sbjct: 291 HYQEVITPGIGGKNLYVTSGHYAHYGKDAFQPIQTPEEGEEYMLKPMNCPHHCEIFAHKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    FR E      G+ R R F   DA+ F    +  K  +  +    
Sbjct: 351 RSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHLFVRPEQVKKE-FEDVIDII 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            ++F   G ++   +                  D  + + +   D +         +  +
Sbjct: 410 QKVFITFGFENYEAQISLR--------------DPDDKEKYIGSDEIWEESERAIKEACE 455

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++      F          
Sbjct: 456 EKGLKARVEIGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLPNRF--------KL 504

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D        +     G++    AV+     G   +W           + I    +
Sbjct: 505 EYTAEDNTKQTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW------LTPDQVAILPISE 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E++ A           DD  E+IG +    +L   P  VIVG + ++D  V ++
Sbjct: 559 KYNGYAEEVRAYFEANEVRAIVDDRNEKIGRKIRDNELKRVPYMVIVGEQEMADGLVSMR 618

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M  E+ +    +  + 
Sbjct: 619 QQGGGEQATMPKEDFVKRIQNEVAE 643


>gi|298530062|ref|ZP_07017464.1| threonyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509436|gb|EFI33340.1| threonyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 646

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 151/439 (34%), Gaps = 42/439 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             K+   + +   RD      +L L +    +   G+  + P G      +    R+E  
Sbjct: 228 LKKHLTRLEEARKRDHRKLGAQLDLFS-FSEEAGPGMPIFHPKGALIRTILEDFERKEHL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G   +  P +   +LW +SG YD+Y + M      +++     P +      I++S +
Sbjct: 287 RRGYQIVQGPQILRRELWEKSGHYDNYRENM-YFTHIDEQVYGVKPMNCLSHMLIYKSKL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  ++++    R E      G++R REF   DA+      +        +    
Sbjct: 346 RSYRDLPLRYFELGRVHRHEKSGVLHGLLRVREFTQDDAHILCRPDQLQDE-ITGVVNFV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +    G                   E++V   T   +   S +  +    +  +  D 
Sbjct: 405 RDVMGLFG------------------FEYVVEVSTRPEKHIGSSEAWEKSTRALTSALDA 446

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     I     A Y    D+   KL D+L    + +    +    F    ++      T
Sbjct: 447 LDMPYEINPGDGAFYGPKIDI---KLKDALDRKWQCATVQCD----FTLPERFD----LT 495

Query: 302 FKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG+ +   M    +     R +  +IE              A              
Sbjct: 496 YTGEDGRKYRPVMLHRVVLGAIERFLGVLIEHYGGAFPTWLAPVQARIMNIT-------D 548

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                      R  ++G  V  DD  E++G +   A +   P  ++ G + V +S + ++
Sbjct: 549 AQAGYVHDCADRFRQMGIRVEVDDRNEKLGYKVREAQMEKIPYVLVAGDQEVQESGLNVR 608

Query: 420 HRLTGIREDMSLEEVINYA 438
            R       MS++EV +  
Sbjct: 609 LRGGKNLGLMSIQEVADQI 627


>gi|114570943|ref|YP_757623.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Maricaulis
           maris MCS10]
 gi|122315357|sp|Q0AM08|SYT_MARMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114341405|gb|ABI66685.1| Ser-tRNA(Thr) hydrolase [Maricaulis maris MCS10]
          Length = 644

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 80/439 (18%), Positives = 142/439 (32%), Gaps = 42/439 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              I +   RD      ++ L      + ++G   W P G +    V + +R      G 
Sbjct: 233 LHRIEEAEKRDHRKLGKQMELF--HFQEEAQGQVFWHPNGWRLYRTVTSYMRRRLEAAGY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEML-RLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           +E+  P L     W  SG +D Y + M     D+ +K +   P +      +F    KSY
Sbjct: 291 VEIRTPQLMDRKFWEASGHWDKYRENMFISSIDQEEKVLAVKPMNCPCHVQVFNQGQKSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G+MR R F+  DA+ F  + + +    +        +
Sbjct: 351 RDLPLRMAEFGSCHRYEPSGSLHGLMRVRGFVQDDAHIFCTSDQITAE-VSDFCELLKSV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +   ++    P     S E                   D    S     +    
Sbjct: 410 YADFGFEEPRIKFSDRPEQRVGSDE-----------------VWDQAEASLKAAAEASGL 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK- 303
                    A Y    D     + D++    +      +    F    +    + A+F  
Sbjct: 453 DYEYNPGDGAFYGPKLDF---VVKDAIGREWQTGTIQCD----FNLPER----LDASFIG 501

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               K   V +    +G++     V+  S+ GK   W           + I         
Sbjct: 502 DDSEKHRPVMLHRAILGSLERFLGVLIESYAGKLPFW------LAPRQVVIATITSDADG 555

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++ A + K G     D   E+I  +     +   P+  +VG K   D  + ++    
Sbjct: 556 YAEEVKAAMVKAGLHAETDLRNEKINYKVREHSVGKVPVIAVVGRKEAEDGTLALRFLGE 615

Query: 424 G--IREDMSLEEVINYASH 440
           G   +E +SL + I   S 
Sbjct: 616 GGKTQEILSLADAIARLSE 634


>gi|148652560|ref|YP_001279653.1| prolyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
 gi|172048509|sp|A5WDG2|SYP_PSYWF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148571644|gb|ABQ93703.1| prolyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
          Length = 576

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 120/274 (43%), Positives = 170/274 (62%), Gaps = 4/274 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DA+I S +LMLR G+I + + G+Y WLP+G K L  V  I+REE
Sbjct: 1   MRASQFLFATLKETPSDADIVSSQLMLRAGLIRKLASGLYVWLPMGLKVLQKVEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+ +P  Q A+LW ESGR++ YG E+LR  DR+++  + GPTHEEV+TD+ R 
Sbjct: 61  MQNIGGQEVLMPMTQPAELWQESGRFEDYGPELLRFTDRHNRDFVLGPTHEEVITDLARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP TF+QIQ KFRDE+RPRFG+MR+REF MKDAYSF +     + +Y +M+ +
Sbjct: 121 ELRSYKQLPVTFFQIQGKFRDEIRPRFGIMRAREFTMKDAYSFHVDQASLEVTYQQMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP---SENT 237
           Y RIF RLGL    + A++G IGG  SHEF VLA +GE  +  S    D+      +E  
Sbjct: 181 YTRIFQRLGLNFRAVLADTGSIGGSASHEFHVLAGSGEDAIAFSD-GSDYAANVELAEAI 239

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             D+  +     +  + P   T++   + L   L
Sbjct: 240 CTDERAAPTQDKQNVSTPKIQTNEELAKFLDIPL 273



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/197 (34%), Positives = 103/197 (52%), Gaps = 8/197 (4%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A      D+ N    D+ P+ K      RGIEVGHIF  G KYS  ++ T  G DGK
Sbjct: 379 ERDATITDVVDIRNVVEGDASPDGKGTLSIKRGIEVGHIFQLGDKYSKALNCTVMGEDGK 438

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA------PFKISLINIKAHDQVCR 362
              + MG YGIG  R++AA IE +HD  GIIW  +        PF I+++ +K+ +    
Sbjct: 439 PVTLMMGCYGIGVSRIIAAAIEQNHDDNGIIWAKTPDIKDSIAPFDIAIVPMKSKEDTVM 498

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E +Y  L   G +V  DD  E+ G +FA  +L+G P +++V  + +++ K E   R 
Sbjct: 499 QTAEALYEELKARGLNVILDDRNERPGVKFADLELIGIPHRIVVSDRNLAEDKYEYVDRR 558

Query: 423 TGIREDMSLEEVINYAS 439
            G ++ +S EE++   S
Sbjct: 559 DGEKQLLSREELLAKVS 575


>gi|227821825|ref|YP_002825795.1| threonyl-tRNA synthetase [Sinorhizobium fredii NGR234]
 gi|254783532|sp|C3MB49|SYT_RHISN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|227340824|gb|ACP25042.1| ThrS; threonyl-tRNA synthetase [Sinorhizobium fredii NGR234]
          Length = 661

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 147/444 (33%), Gaps = 39/444 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L      +   G+  W   G +   ++ A +R      
Sbjct: 233 QYLHVLAEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHGKGWRVFQSLVAYMRRRLE-V 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFR 119
              E++ P +    LW  SG +  Y   M ++        +D+     P +      IF+
Sbjct: 290 DYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDETDDDRVFALKPMNCPGHIQIFK 349

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             +KSYR LP    +     R E      G+MR R F   DA+ F    + +        
Sbjct: 350 HGLKSYRELPVRMAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKIN- 408

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   G K I ++  + P     S      A+   T V          I +++  
Sbjct: 409 DLILSVYEDFGFKEIVVKLSTRPDKRVGSDALWDRAEAVMTDVL-------NTIEAQSEG 461

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                 L        A Y    +     L D++    +     ++      FG       
Sbjct: 462 RIKTGIL----PGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------- 507

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +   D +      +     G+M     ++  ++ G   +W           + +   
Sbjct: 508 -AFYIDKDSEKRQPVMIHRAICGSMERFLGILLENYAGHMPLW------ISPLQVVVATI 560

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++ ARL + G  V  D   E+I  +     +   P+ V+ G +   +  V 
Sbjct: 561 TSDADDYGREVAARLREAGLTVETDFRNEKINYKIREHSVTKVPVIVVCGKREAEERSVN 620

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           I+   +  +  MSLEE +   S  
Sbjct: 621 IRRLGSQAQTAMSLEEAVAALSSE 644


>gi|149190039|ref|ZP_01868316.1| prolyl-tRNA synthetase [Vibrio shilonii AK1]
 gi|148836069|gb|EDL53029.1| prolyl-tRNA synthetase [Vibrio shilonii AK1]
          Length = 571

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 112/237 (47%), Positives = 152/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGAELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAF-SSESDYAANIEKA 236



 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  +      RGIEVGHIF  G  YS  M
Sbjct: 366 DDKHYFGINWGRDVELGKVEDLRNVVEGDPSPCGQGTIQLKRGIEVGHIFQLGKNYSEKM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +    G DGK+  ++MG YGIG  RVVA+ IE ++D  GIIWPD++APF+++++ +    
Sbjct: 426 NCGVLGPDGKNTILEMGCYGIGVSRVVASAIEQNNDKYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SERVKEAAEKLYAELTAAGIEVLFDDRKERPGVMFSDIELIGIPHTIVIGDRSMDEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG +  +++E+++ + + + +
Sbjct: 546 YKNRRTGDKTPVAMEQIVAHVTSQLA 571


>gi|282899245|ref|ZP_06307218.1| Prolyl-tRNA synthetase [Cylindrospermopsis raciborskii CS-505]
 gi|281195881|gb|EFA70805.1| Prolyl-tRNA synthetase [Cylindrospermopsis raciborskii CS-505]
          Length = 603

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 124/294 (42%), Positives = 168/294 (57%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL+LR G I +   G+Y++LPL  + L  ++ I+REE
Sbjct: 1   MRLSQKLFVTLRDDPADAEIPSHKLLLRAGYIRRIGSGVYAYLPLMWRVLQKISQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNATGAEECLLPQLQPAELWKESGRWDTYTKAEGIMFSLIDRREQHLGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF    E  K +Y  M
Sbjct: 121 GRDMIRSYRQLPVHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTDEESLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           + +Y  I  R GL    + A+SG IGG  S EF+VLAD GE +V  ++D        +  
Sbjct: 181 YQAYSNILRRCGLAFRAVEADSGAIGGSGSTEFMVLADAGEDEVLYTQDGKYAANVEKAV 240

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                   ++       P  AT  +  EK+ D L  +     + +    ++  G
Sbjct: 241 SLPADAEPSNFKTCEKVPTVATETI--EKVCDYLKCSPTQVVKNVLYQTVYDQG 292



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/202 (35%), Positives = 108/202 (53%), Gaps = 5/202 (2%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
           +  EQ+  P     D+   K  D     P     +ARGIE GHIF  GTKYSL M AT+ 
Sbjct: 400 NWQEQFKLPE-LVVDIRKAKPGDRSVHDPSQTLETARGIEAGHIFQLGTKYSLAMGATYT 458

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              G++  + MG YG+G  R+  + +E S+DG GIIWP ++AP+   +      D    +
Sbjct: 459 NEQGEEKPLVMGCYGVGVSRLAQSAVEQSYDGDGIIWPVAIAPYHAIISIPNIKDTHQVE 518

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EKIY  L+KVG +   DD  E+ G +F  ADL+G P +++ G + +S  KVE+  R T
Sbjct: 519 IAEKIYTELNKVGIETLLDDRNERAGVKFKDADLIGIPYRIVTG-RSISHGKVEVVTRAT 577

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              +++++E +++      S  
Sbjct: 578 RESQEIAIENLVDTLESWISQR 599


>gi|145803|gb|AAA23710.1| RNA synthesis factor (drpA) [Escherichia coli]
          Length = 516

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 118/235 (50%), Positives = 158/235 (67%), Gaps = 2/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+++P  FYQIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +
Sbjct: 121 ELSSYKHVPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +IF R+GL    ++A++G IGG            GE  V  S    D+    E
Sbjct: 181 YSKIFSRMGLDFRAVQADTGSIGG-RPLTNSRCWRRGEDDVVFSDT-SDYAANIE 233



 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/133 (40%), Positives = 83/133 (62%), Gaps = 3/133 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+   + +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 382 EVADIRNVVAGDPSPDGQGRLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 441

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 442 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 501

Query: 375 VGCDVFWDDMGEQ 387
            G +V  DD  E+
Sbjct: 502 QGIEVLLDDRKER 514


>gi|229197929|ref|ZP_04324645.1| Prolyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228585647|gb|EEK43749.1| Prolyl-tRNA synthetase [Bacillus cereus m1293]
          Length = 566

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKELEKVATPDQKAIEEV 266



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|49481697|ref|YP_037880.1| prolyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|81395110|sp|Q6HEZ6|SYP1_BACHK RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|49333253|gb|AAT63899.1| proline--tRNA ligase (prolyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 566

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKELEKVATPDQKAIEEV 266



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|52141669|ref|YP_085160.1| prolyl-tRNA synthetase [Bacillus cereus E33L]
 gi|81686584|sp|Q636K7|SYP1_BACCZ RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|51975138|gb|AAU16688.1| proline--tRNA ligase (prolyl-tRNA synthetase) [Bacillus cereus
           E33L]
          Length = 566

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKELEKVATPDQKAIEEV 266



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEIKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|290893569|ref|ZP_06556552.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
 gi|290556914|gb|EFD90445.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
          Length = 568

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 124/294 (42%), Positives = 167/294 (56%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S    D+   +E     
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSD-ASDYAANTEMAPVL 239

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                   L   +E+   P   +     E L   + +  +     ++   I   
Sbjct: 240 YMEKKSHELEKELEKVATPDQKSIADIVEFLEVPIEKTMKSMLYQVDEEVIMVL 293



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 383 DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSQAMNATILDENGRAQPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G +W   ++PF + LI +    +      E +Y  L   G  
Sbjct: 443 IGVSRILSAIAEQSNDENGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYTSLQGAGFS 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N  
Sbjct: 503 VLIDDRAERAGVKFADADLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTL 561


>gi|269213497|ref|ZP_06158007.1| proline--tRNA ligase [Neisseria cinerea ATCC 14685]
 gi|269146261|gb|EEZ72679.1| proline--tRNA ligase [Neisseria cinerea ATCC 14685]
          Length = 594

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 25  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 84

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 85  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 144

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 145 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 204

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 205 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANVE 258



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 7/230 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPEN--K 275
           F  K + DF               +     +     A      D+ N    D  P+   +
Sbjct: 365 FTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGR 424

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D 
Sbjct: 425 LKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDE 484

Query: 336 KGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     
Sbjct: 485 KGIIWTKAMAPFEVVIVPMNYKKSDAVREAADKIYAELLAAGADVLLDDRDERAGVLLND 544

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++LLG P ++++G + + +  VE   R     + + + E++   +   + 
Sbjct: 545 SELLGIPHRIVIGDRALKEGNVEYAERRDNEAQSVPIGEIVARVTDSLNT 594


>gi|256827500|ref|YP_003151459.1| prolyl-tRNA synthetase, family II [Cryptobacterium curtum DSM
           15641]
 gi|256583643|gb|ACU94777.1| prolyl-tRNA synthetase, family II [Cryptobacterium curtum DSM
           15641]
          Length = 588

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 109/272 (40%), Positives = 167/272 (61%), Gaps = 2/272 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  ++P L+E P DA+IASH+L+LR GM+ + + G Y++LPLG + +  +  I+REE 
Sbjct: 6   RMSALYVPTLKEVPTDADIASHQLLLRAGMMRKSATGAYTYLPLGWRVIRKIERIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G+ E+ +P +Q A+LW ESGR++ YG E++R+ DR+   +  GPTHEE++T + R+ 
Sbjct: 66  DAIGSQEIMMPVIQPAELWHESGRWNDYGPELMRMDDRHGHGLCLGPTHEELITALVRNE 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SY+ LP   YQIQ KFRDE+RPRFG+MRSREF+MKDAYSF  + E  + +Y++M  +Y
Sbjct: 126 LRSYKQLPVILYQIQSKFRDEIRPRFGLMRSREFIMKDAYSFHASKESLQKTYDEMSAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RI  R+GL   P+ A++G IGG ++ E+  LAD GE ++            +E      
Sbjct: 186 ARICERVGLVYRPVEADAGQIGGSVTCEYHALADAGEAELASCSCGW--ASNTEVAACQC 243

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
             +     E         + + +   F   PE
Sbjct: 244 HPTEYPETELRKVATPGVATIADLAQFLKCPE 275



 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 69/178 (38%), Positives = 103/178 (57%), Gaps = 2/178 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+   K  D  PE   +    RGIEVG +F  G KYS  M ATF   DG +    MG 
Sbjct: 380 WADLCTIKAGDVCPECGELVEITRGIEVGQVFQLGDKYSRAMGATFMAEDGSEQPFLMGC 439

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YG+G  R +AAV+E  +D  GI WP SVAP ++ ++ +   D+    A E +   L+ +G
Sbjct: 440 YGVGVSRTMAAVVEQHNDEYGIKWPLSVAPAQVCILPLAVGDEEVEPAAEALAHELAGMG 499

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +V  DD  E+ G +FA ADLLG+PLQ+I+G + +   + E+K+R TG +  ++++E 
Sbjct: 500 LEVVIDDRKERPGVKFAEADLLGWPLQIIIGKRGLDAGEYELKNRSTGAKRTIAIDEF 557


>gi|254828679|ref|ZP_05233366.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
 gi|254829924|ref|ZP_05234579.1| prolyl-tRNA synthetase [Listeria monocytogenes 10403S]
 gi|254898516|ref|ZP_05258440.1| prolyl-tRNA synthetase [Listeria monocytogenes J0161]
 gi|254911993|ref|ZP_05262005.1| prolyl-tRNA synthetase [Listeria monocytogenes J2818]
 gi|254936320|ref|ZP_05268017.1| prolyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|284801704|ref|YP_003413569.1| prolyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284994846|ref|YP_003416614.1| prolyl-tRNA synthetase [Listeria monocytogenes 08-5923]
 gi|258601083|gb|EEW14408.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
 gi|258608910|gb|EEW21518.1| prolyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|284057266|gb|ADB68207.1| prolyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284060313|gb|ADB71252.1| prolyl-tRNA synthetase [Listeria monocytogenes 08-5923]
 gi|293589957|gb|EFF98291.1| prolyl-tRNA synthetase [Listeria monocytogenes J2818]
          Length = 568

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 124/294 (42%), Positives = 167/294 (56%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S    D+   +E     
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSD-ASDYAANTEMAPVL 239

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                   L   +E+   P   +     E L   + +  +     ++   I   
Sbjct: 240 YMEKKSHELEKDLEKVATPDQKSITDIVEFLEVPIEKTMKSMLYQVDDEVIMVL 293



 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 383 DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G +W   ++PF + LI +    +      E +Y  L   G  
Sbjct: 443 IGVSRILSAIAEQSNDENGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYTSLQDAGFS 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N  
Sbjct: 503 VLIDDRAERAGVKFADADLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTL 561


>gi|333029961|ref|ZP_08458022.1| threonyl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
 gi|332740558|gb|EGJ71040.1| threonyl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
          Length = 647

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 152/446 (34%), Gaps = 36/446 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      ++ L         KG+  WLP G      +   +++ Q 
Sbjct: 229 LTEYLEMMEEAKKRDHRKIGKEMELFM-FSETVGKGLPMWLPKGTALRLRLEDFLKKIQK 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
             G  ++  P + +  L+V SG Y  YGK+  +        +  +  P +     +I++ 
Sbjct: 288 EFGYEQVITPHIGNKLLYVTSGHYAKYGKDSFQPIHTPEEGEEYLLKPMNCPHHCEIYKW 347

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP    +    +R E      G+ R R F   DA+ F   P+  K  +  +  
Sbjct: 348 TPRSYRELPLRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCR-PDQVKEEFLSVMD 406

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               IF  L  ++   +                  D    + +   D       +   + 
Sbjct: 407 IIFIIFKALNFENFEAQISLR--------------DPVNREKYIGSDENWEKAENAIVEA 452

Query: 240 DDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                L + +E    A Y    D     + D+L    ++    ++      F  +Y+   
Sbjct: 453 CKEKGLKAKIEYGEAAFYGPKLDFM---VRDALGRKWQLGTIQVDYNLPERFNLEYTGAD 509

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +            V +     G+M    AV+     GK  +W           + I    
Sbjct: 510 NLK-------HRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPIS 556

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D   ++   L K       DD  E+IG +    ++   P  +IVG K   + +V +
Sbjct: 557 ERFNDYAHEVKKYLDKNDIRASVDDRNEKIGRKIRDNEVKRIPYMLIVGEKEAENREVSV 616

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           + +  G +  + LE+     +    N
Sbjct: 617 RKQGEGDQGVIKLEDFAKKLNEEVQN 642


>gi|229129095|ref|ZP_04258068.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|229146390|ref|ZP_04274761.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|296504314|ref|YP_003666014.1| prolyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|228637023|gb|EEK93482.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|228654332|gb|EEL10197.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|296325366|gb|ADH08294.1| prolyl-tRNA synthetase [Bacillus thuringiensis BMB171]
          Length = 566

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|197334450|ref|YP_002155444.1| prolyl-tRNA synthetase [Vibrio fischeri MJ11]
 gi|226701355|sp|B5FBD6|SYP_VIBFM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|197315940|gb|ACH65387.1| prolyl-tRNA synthetase [Vibrio fischeri MJ11]
          Length = 571

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 114/237 (48%), Positives = 153/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRRLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/190 (32%), Positives = 106/190 (55%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +      RGIEVGHIF  GT YS  M+     A+GK+  ++M
Sbjct: 382 GQVEDLRNVVEGDPSPCGKGTLQLKRGIEVGHIFQLGTAYSEAMNCGVLDANGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVA+ IE ++D  GI+WP+++APF ++++ +     +  ++A EK+YA L+
Sbjct: 442 GCYGIGVSRVVASAIEQNNDEYGIVWPEAIAPFTVAIVPMNMHKSERVKEAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G +V +DD  E+ G  F   +L+G P  +++G + + +   E K+R    +E + +  
Sbjct: 502 AMGIEVLFDDRKERPGVMFKDIELIGIPHTIVIGDRSMDEGNFEYKNRRANTKEAVEMAN 561

Query: 434 VINYASHRFS 443
           ++ +   + S
Sbjct: 562 IVEHIKAQLS 571


>gi|307945488|ref|ZP_07660824.1| threonyl-tRNA synthetase [Roseibium sp. TrichSKD4]
 gi|307771361|gb|EFO30586.1| threonyl-tRNA synthetase [Roseibium sp. TrichSKD4]
          Length = 656

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 148/445 (33%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L      +   G+  W   G     N+ + +R     
Sbjct: 237 KAYLHMLEEAEKRDHRKLGREMDLF--HFQEEGPGVVFWHDKGWTLFQNLVSYMRRRL-S 293

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEML-----RLADRNDKAMIYGPTHEEVMTDIF 118
               E++ P + S  LW  SG +  Y + M         D +       P +      IF
Sbjct: 294 GDYQEVNAPQVLSTKLWETSGHWAWYKENMFAVQGADPEDEDTHVFALKPMNCPGHIQIF 353

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + ++      
Sbjct: 354 KHGLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVFCTDEQMAEECLKIN 413

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A+         K        S   
Sbjct: 414 -DLILSVYEHFGFEKIVVKLSTRPEKRVGSDELWDHAEE-----VMGKVLEQIKEQSGGR 467

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              DI      +    A Y    +     L D++    +     ++      FG      
Sbjct: 468 VETDI------LPGEGAFYGPKFEY---TLRDAIGREWQCGTTQVDFNLPERFG------ 512

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   +G+      +     G+M     ++  ++ G   +W   +     ++     
Sbjct: 513 --AFYVDNNGEKQTPVMIHRAICGSMERFLGILIENYSGHFPLWLAPLQVVVATIT---- 566

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++  +L   G  V  D   E+I  +     L   P  V+ G +   +  V
Sbjct: 567 --SEADDYGREVAGKLRAAGLKVETDFRNEKINYKVREHSLAKVPAIVVCGMREAEEKSV 624

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+   +  +  MSL+E I      
Sbjct: 625 NIRRLGSKHQTAMSLDEAIEAFRSE 649


>gi|229134626|ref|ZP_04263436.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|228648887|gb|EEL04912.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
          Length = 566

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 124/311 (39%), Positives = 175/311 (56%), Gaps = 5/311 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+++LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQASELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-- 238
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 239 --FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
             +         +E+   P     +  +  L  +  +  +     ++   +       + 
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEVSAFLNIAAEKCIKSMVFKVDAKLVVVLVRGDNE 299

Query: 297 PMSATFKGADG 307
                 K   G
Sbjct: 300 VNDVKVKNVYG 310



 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|228960035|ref|ZP_04121699.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228799551|gb|EEM46504.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 566

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKAQLLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|294010776|ref|YP_003544236.1| threonyl-tRNA synthetase [Sphingobium japonicum UT26S]
 gi|292674106|dbj|BAI95624.1| threonyl-tRNA synthetase [Sphingobium japonicum UT26S]
          Length = 668

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 149/450 (33%), Gaps = 48/450 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      ++ L    + Q + G   W P G      + A +R   +  G 
Sbjct: 245 LTRLEEAARRDHRKLGAEMDLF--HLQQEAHGSVFWHPKGYIIWRALEAYMRRAIDDAGY 302

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-------------AMIYGPTHEEV 113
            E+  P +  A  W +SG +  Y + M  + D                  M   P +   
Sbjct: 303 REVKTPQVMDARQWEQSGHWGKYRENMFVIPDEVPNVEDEGPLVSDDADWMALKPMNCPA 362

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFR  IKSYR+LP  FY+     R+E      G+MR R+F   DA+ F    +  + 
Sbjct: 363 HVLIFRQGIKSYRDLPLRFYENGCCHRNEPHGALHGLMRVRQFTQDDAHIFCREDQIVEE 422

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                     RI+   G      +    P     S      A+  E +   +   +D P 
Sbjct: 423 -VRAFCALADRIYKDFGFTYSI-KLALRPEKRFGSDAMWDQAE-NELRDAVAAAGLDTPE 479

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                           +    A YA   + H   L D++    +V     +         
Sbjct: 480 YG-----------WEELPGEGAFYAPKLEWH---LTDAIGRTWQVGTIQSDRVLP----- 520

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                + A++ G DG+ H    +     G+      ++   + G+  +W   V     ++
Sbjct: 521 ---ERLDASYVGEDGERHRPVMLHRAIFGSYERFIGILIEHYAGRFPLWLAPVQAVVATI 577

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +              ++  +L   G     D   E+I  +     L   P  ++VG +  
Sbjct: 578 V------SDADGYAIEVAEKLRAAGIRAETDLRNEKINYKVREHSLAKVPNLLVVGRREA 631

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +  V ++      +  +S+++VI   +  
Sbjct: 632 DEGTVALRELGKEGQSVLSVDDVIARLAKE 661


>gi|217964534|ref|YP_002350212.1| prolyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|254782905|sp|B8DG08|SYP_LISMH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|217333804|gb|ACK39598.1| prolyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|307570900|emb|CAR84079.1| proS [Listeria monocytogenes L99]
          Length = 568

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 124/294 (42%), Positives = 167/294 (56%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S    D+   +E     
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSD-ASDYAANTEMAPVL 239

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                   L   +E+   P   +     E L   + +  +     ++   I   
Sbjct: 240 YMEKKSHELEKELEKVATPDQKSIADIVEFLEVPIEKTMKSMLYQVDEEVIMVL 293



 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 383 DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSQAMNATILDENGRAQPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G +W   ++PF + LI +    +      E +Y  L   G  
Sbjct: 443 IGVSRILSAIAEQSNDENGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYTSLQGAGFS 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N  
Sbjct: 503 VLIDDRAERAGVKFADADLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTL 561


>gi|206896471|ref|YP_002247167.1| threonyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
 gi|206739088|gb|ACI18166.1| threonyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
          Length = 632

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 158/444 (35%), Gaps = 40/444 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           FL  L+E  R D      +L L +  I++    G+  W P G      +    R+     
Sbjct: 221 FLHNLEEAERRDHRKLGKQLDLFS--INEDIGPGLILWHPNGAVIRKEIEDFWRQSHIDN 278

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +    LW  SG    Y + M    +  +++ +  P +      I+++  +S
Sbjct: 279 GYQLVYTPHVARTKLWEISGHLSFYKENMFPSMELENQSYLVKPMNCPFHVQIYKTKTRS 338

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y+ LP  F ++   +R E      G++R R F   DA+ F    +  +    K+    L 
Sbjct: 339 YKELPIRFAELGTVYRFERSGVLHGLLRVRGFTQDDAHIFCAREQVEEEV-EKVLDMALG 397

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I+   G +             DL  E  V     + +     D  +    + +       
Sbjct: 398 IYRLFGFE-------------DLRIELSVRDPKNKDKYVGDDDVWELAESALSGALKARD 444

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              ++ E     Y    D+   K+ D+L    +     ++    F    ++++     + 
Sbjct: 445 LDFTVAEGEAKFYGPAIDI---KVKDALGRYWQGPTIQVD----FNLPRRFNM----KYT 493

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG +H    +    +G++    A++   + G   +W        + +       +   
Sbjct: 494 GQDGLEHEPVMIHRALLGSLERFFALLIEQYSGWFPLWVAPEQVRILPIT------EDQM 547

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              + +   L +    V  D D G ++G +         P  ++VGSK V    V ++H 
Sbjct: 548 QYAQSVAEGLKE--FRVKLDTDTGSKLGYRIRRGQTEKVPYMLVVGSKEVESGVVSVRHG 605

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
           + G    MSL+E  +       N 
Sbjct: 606 VKGDLGQMSLDEFKSMIKEEIENK 629


>gi|218768358|ref|YP_002342870.1| prolyl-tRNA synthetase [Neisseria meningitidis Z2491]
 gi|81857470|sp|Q9JU09|SYP_NEIMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|121052366|emb|CAM08698.1| prolyl-tRNA synthetase [Neisseria meningitidis Z2491]
          Length = 570

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANVE 234



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A      D+ N    D  P+   +   ARGIEVGH+F    KY+  M+ +F   +GK
Sbjct: 374 GRDAAEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGK 433

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE ++D KGIIW  ++A F++ ++ +        R+A +K
Sbjct: 434 SQIMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMASFEVVIVPMNYKKSDTVREAADK 493

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     +
Sbjct: 494 IYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRDNEAQ 553

Query: 428 DMSLEEVINYASHRFS 443
            +++ E++   +   +
Sbjct: 554 AIAIGEIVARVTASLN 569


>gi|307309192|ref|ZP_07588863.1| threonyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
 gi|306900338|gb|EFN30954.1| threonyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
          Length = 660

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 146/444 (32%), Gaps = 39/444 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L      +   G+  W   G +   ++ A +R      
Sbjct: 233 QYLHVLAEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHGKGWRIFQSLVAYMRRRLE-G 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFR 119
              E++ P +    LW  SG +  Y   M ++        +D+     P +      IF+
Sbjct: 290 DYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIFK 349

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             +KSYR LP    +     R E      G+MR R F   DA+ F    + +        
Sbjct: 350 HGLKSYRELPVRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKIN- 408

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   G K I ++  + P     S E    A+   T+V   +   +       T 
Sbjct: 409 DLILSVYEDFGFKEIVVKLSTRPEKRVGSDELWDRAEAVMTEVL--QTIEEQSEGRIKTG 466

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                     +    A Y    +     L D++    +     ++      FG       
Sbjct: 467 I---------LPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------- 507

Query: 299 SATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +      K   V +     G+M     ++  ++ G   +W           + +   
Sbjct: 508 -AFYIDSESEKRQPVMIHRAICGSMERFLGILLENYAGHMPLW------ISPLQVVVATI 560

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++  RL   G  V  D   E+I  +     +   P+ V+ G +   +  V 
Sbjct: 561 TSEADDYGREVAERLRDAGLTVETDFRNEKINYKVREHSVTKVPVIVVCGRREAEERSVN 620

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           I+   +  +  MSL+E +   S  
Sbjct: 621 IRRLGSQAQTAMSLDEAVASLSAE 644


>gi|307321522|ref|ZP_07600917.1| threonyl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|306892829|gb|EFN23620.1| threonyl-tRNA synthetase [Sinorhizobium meliloti AK83]
          Length = 660

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 146/444 (32%), Gaps = 39/444 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L      +   G+  W   G +   ++ A +R      
Sbjct: 233 QYLHVLAEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHGKGWRIFQSLVAYMRRRLE-G 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFR 119
              E++ P +    LW  SG +  Y   M ++        +D+     P +      IF+
Sbjct: 290 DYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIFK 349

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             +KSYR LP    +     R E      G+MR R F   DA+ F    + +        
Sbjct: 350 HGLKSYRELPVRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKIN- 408

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   G K I ++  + P     S E    A+   T+V   +   +       T 
Sbjct: 409 DLILSVYEDFGFKEIVVKLSTRPEKRVGSDELWDRAEAVMTEVL--QTIEEQSEGRIKTG 466

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                     +    A Y    +     L D++    +     ++      FG       
Sbjct: 467 I---------LPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------- 507

Query: 299 SATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +      K   V +     G+M     ++  ++ G   +W           + +   
Sbjct: 508 -AFYIDSESEKRQPVMIHRAICGSMERFLGILLENYAGHMPLW------ISPLQVVVATI 560

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++  RL   G  V  D   E+I  +     +   P+ V+ G +   +  V 
Sbjct: 561 TSEADDYGREVAERLRDAGLTVETDFRNEKINYKVREHSVTKVPVIVVCGRREAEERSVN 620

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           I+   +  +  MSL+E +   S  
Sbjct: 621 IRRLGSQAQTAMSLDEAVASLSAE 644


>gi|157964288|ref|YP_001499112.1| threonyl-tRNA synthetase [Rickettsia massiliae MTU5]
 gi|157844064|gb|ABV84565.1| Threonyl-tRNA synthetase [Rickettsia massiliae MTU5]
          Length = 651

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 153/438 (34%), Gaps = 40/438 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L + +   RD      +L L      + ++G+  W   G    + +   IR++  + G
Sbjct: 247 YLLMLEEAEKRDHRKLGRELDLF--HFQEEAQGMVFWHDKGWSIYNTIEQYIRKKIRKNG 304

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG +  +  +M  + + +DK +   P +      IF+  IKSY
Sbjct: 305 YTEVKTPVLVDKSLWEVSGHWAKFRDDMF-VLETDDKTLALKPMNCPCHVQIFKQGIKSY 363

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    + +  + +        +
Sbjct: 364 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCAEEQITDETVSF-CKLLTEV 422

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E                   D    +     +    
Sbjct: 423 YKDFGFTDIKVKFSDRPEVRAGSDE-----------------VWDKAENALKEAVEQAGF 465

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             ++     A Y    +     L D++    +     ++    F    +    + A++  
Sbjct: 466 TYTLNPGEGAFYGPKLEF---VLTDAIGRQWQCGTLQMD----FVLPER----LDASYVA 514

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           A G+      +    +G++     ++   + G+  +W           + I        D
Sbjct: 515 ASGEKKRPVMLHRAILGSLERFIGILIEEYAGRFPLW------LAPVQVAIATITSDLND 568

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G    ++   ++I  +         P+  ++G +   + +V I+   T
Sbjct: 569 YALEVQKALIDNGVRTDFNISPDKINYKIREFSNQKIPMIAVIGKQEQENKQVAIRRLGT 628

Query: 424 GIREDMSLEEVINYASHR 441
             +E +S+E++I      
Sbjct: 629 TDQEVLSVEQLIAVVKEE 646


>gi|47096944|ref|ZP_00234521.1| prolyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|47014704|gb|EAL05660.1| prolyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
          Length = 502

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 124/294 (42%), Positives = 167/294 (56%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S    D+   +E     
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSD-ASDYAANTEMAPVL 239

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                   L   +E+   P   +     E L   + +  +     ++   I   
Sbjct: 240 YMEKKSHELEKDLEKVATPDQKSITDIVEFLEVPIEKTMKSMLYQVDDEVIMVL 293



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 383 DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G +W   ++PF + LI +    +      E +Y  L   G  
Sbjct: 443 IGVSRILSAIAEQSNDENGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYTSLQDAGFS 502


>gi|154706797|ref|YP_001424763.1| threonyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
 gi|154356083|gb|ABS77545.1| threonyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
          Length = 660

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 146/447 (32%), Gaps = 41/447 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD  + + K+ L        S G   W P G   +  +   IR  
Sbjct: 235 KALKAYLYRLEEAEKRDHRLLAKKMDLF--HFQPESPGNVFWHPNGWSIILQMREYIRHI 292

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+  P L  A LW +SG    +G ++  L     +  +  P        IF  
Sbjct: 293 THKYGYQEVHTPQLIDASLWDKSGHLGKFGDDIFSLPLEP-QQYVIKPMSCPAHVQIFNQ 351

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP  + +     R+E      G+MR R F+  DA+ F    +      +    
Sbjct: 352 GVKSYRDLPLRYAEFGACHRNEPSGTLHGLMRLRGFVQDDAHIFCTEDQIQSE-VSAFID 410

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G   +  +  + P     S E    A+    +    K      +P E    
Sbjct: 411 QLHEVYADFGFTEVIHKLSTRPEKRVGSDEVWTKAEQALAEALNRKGVEWDILPGE---- 466

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                         A Y    +     L D L    +     ++       G        
Sbjct: 467 -------------GAFYGPKIEF---SLRDCLGRIWQCGTVQVDFSVPERLG-------- 502

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   DG       +    +G+      ++     GK  +W   V    +++       
Sbjct: 503 AHYIAEDGSKKPPVMIHRAILGSFERFLGILLEESAGKLPLWLAPVQVVVMNIT------ 556

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   +    L  +G     D   E+IG +     +   P  V++G + V+D  + +
Sbjct: 557 DRQADYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREVADKTLSV 616

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           +         ++LEE         S  
Sbjct: 617 RALEDEASTTITLEEFARQLKAEISQR 643


>gi|319902630|ref|YP_004162358.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Bacteroides
           helcogenes P 36-108]
 gi|319417661|gb|ADV44772.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Bacteroides
           helcogenes P 36-108]
          Length = 646

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 149/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRIRLQDFLRRIQARY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++  
Sbjct: 289 DYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D      +   D           +  +
Sbjct: 408 SIVFQSMDFENFEAQISLR--------------DKVNRDKYIGSDENWEKAEQAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLKARIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GAD + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYTGADNQKHRPVMVHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  +++   L K       D+  E+IG +    ++   P  ++VG K   + ++ ++
Sbjct: 557 KFNDYAQEVKLFLKKYDIRAIVDERNEKIGRKIRDNEMKRIPYMLVVGEKEAENKEIAVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M +EE     S    N
Sbjct: 617 KQGEGDKGTMKIEEFAKKISEEVQN 641


>gi|319795456|ref|YP_004157096.1| prolyL-tRNA synthetase [Variovorax paradoxus EPS]
 gi|315597919|gb|ADU38985.1| prolyl-tRNA synthetase [Variovorax paradoxus EPS]
          Length = 581

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 119/237 (50%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ASH+LM+R GMI +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASRFFVSTLKEAPADAEVASHRLMMRAGMIKKLGTGIYTYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+++P +Q A+ W E+GR++  G E+LR+ DR+D+  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAIELTMPVVQPAEFWQETGRFEKMGPELLRIKDRHDRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + +K SY  M  +
Sbjct: 121 EIRSYKQLPKNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDRDLDAAKASYQIMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF R GL+   + A+SG IGGDLS EF V+A TGE  +    D  ++    E  
Sbjct: 181 YRNIFDRFGLRYRAVAADSGAIGGDLSEEFQVIAATGEDAIVYCPD-SNYAANMEKA 236



 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 67/188 (35%), Positives = 108/188 (57%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D+ P+ K V    RGIEVGH+F  GTKYS  M+AT+    GK  +++MG 
Sbjct: 393 VADLRNVVAGDASPDGKGVLAIERGIEVGHVFVLGTKYSKDMNATYLDEGGKPQFLEMGC 452

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV 375
           YGIG  R+ AA IE +HD +GIIWPD++APF + +  I        + + E +Y  L   
Sbjct: 453 YGIGITRLPAAAIEQNHDERGIIWPDALAPFTVVVCPIGMDRSPEVKVSAEALYEELLAK 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD GE+ G+ FA  +L+G P +V++  + + + ++E +HR       +   ++ 
Sbjct: 513 GVDVLLDDRGERPGAMFADWELIGVPHRVVISDRGLKEGQLEYQHRRDTAATKVPSADIA 572

Query: 436 NYASHRFS 443
           ++ + + +
Sbjct: 573 DFIAGKLA 580


>gi|319954103|ref|YP_004165370.1| ser-tRNA(thr) hydrolase ;threonyl-tRNA synthetase [Cellulophaga
           algicola DSM 14237]
 gi|319422763|gb|ADV49872.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Cellulophaga
           algicola DSM 14237]
          Length = 646

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 148/437 (33%), Gaps = 38/437 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T    +  +G+  WLP G    + +   +++ Q + G   +  P
Sbjct: 238 AKQRDHRKLGKELELFT-FSAKVGQGLPLWLPKGAALRERLEDFLKKAQKKAGYEMVITP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            +   +L+V SG Y  YG +  +     + D+  +  P +     +++     SY++LP 
Sbjct: 297 HIGQKELYVTSGHYAKYGADSFQPIKTPKMDEEFLLKPMNCPHHCEVYNFKPHSYKDLPK 356

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +    +R E      G+ R R F   DA+ F  TP+     +  +    L +   LG
Sbjct: 357 RFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPDQLDEEFKNVIDLSLYVLGSLG 415

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +   +                  D  + + +           S   +      LN ++
Sbjct: 416 FDNFTAQVSVR--------------DLTKPEKYIGSVENWEKAESAIINAATEKGLNFVI 461

Query: 250 E-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           E    A Y    D     + D+L    ++    ++                 T+KG+D +
Sbjct: 462 ESGEAAFYGPKLDFM---VKDALGRQWQLGTIQVDYNLP--------ERFDLTYKGSDNE 510

Query: 309 DHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            H    +     G+M    A++     G   +W             I    +      EK
Sbjct: 511 LHRPVMIHRAPFGSMERFIALLLEHTGGNFPLW------LIPEQAIILPVSEKHEKYAEK 564

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L K       D   E +G +   A++   P  +IVG    ++  + ++        
Sbjct: 565 VLKSLEKHEIRALVDKRNETVGKKIREAEMNKLPFMLIVGENEEAEETISVRRHGGEDLG 624

Query: 428 DMSLEEVINYASHRFSN 444
            +++ +     +   ++
Sbjct: 625 SITISDFNELVTTEINS 641


>gi|219113189|ref|XP_002186178.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583028|gb|ACI65648.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 684

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 162/438 (36%), Gaps = 39/438 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +  +L+E   RD  +   KL L +  I +    G+  W P G K    +    ++   
Sbjct: 258 KQYKKMLEEAKKRDHRMLGKKLDLFS--IQEDAGGGLVFWHPKGSKVRRMIEDFWKDAHI 315

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P + + DLW  SG +D Y  +M    D  ++     P +      +++  +
Sbjct: 316 QDGYDVVYSPHIANIDLWKTSGHFDFYRADMFDQMDVENEQYQIKPMNCPFHCLMYKDEL 375

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LPF + ++   +R E      G+MR R F   DA+ F L  +        +    
Sbjct: 376 RSYRDLPFRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQLQDEIV-GVLDLT 434

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I  R G     +   + P     S E                   D    +       
Sbjct: 435 ETILSRFGFDKYDVMLSTRPEKSVGSDE-----------------IWDAATVALEGALKV 477

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                ++ E   A Y    D+   K+ D++    + S    +      FG +Y+      
Sbjct: 478 KGWDYNVDEGGGAFYGPKIDL---KIRDAIGRQWQCSTVQCDFNLPERFGLEYA------ 528

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 ++  + +     G++     ++    +     +P  +AP ++ L+ +       
Sbjct: 529 -SADGTRERPIMVHRAIFGSIERFFGILI---ENCSGDFPLWLAPTQLKLLPVT---DAV 581

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            + C +I A+  K+G  +  D   E++  Q   A+    P+  +VG K +  + + ++ R
Sbjct: 582 HEYCNEIAAKALKMGLRIEVDRGSERLAKQIRNAEQARIPVMAVVGMKEMESNSLAVRSR 641

Query: 422 LTGIREDMSLEEVINYAS 439
             G      +E++++   
Sbjct: 642 KLGDLGSFEVEDLLSELK 659


>gi|317164487|gb|ADV08028.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 599

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 116/235 (49%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 263



 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPEN--K 275
           F  K + DF               +     +     A      D+ N    D  P+   +
Sbjct: 370 FTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGR 429

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D 
Sbjct: 430 LKLARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDE 489

Query: 336 KGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           KGIIW  ++APF++ ++ +        R+A ++IYA L   G DV  DD  E+ G     
Sbjct: 490 KGIIWTKAMAPFEVVIVPMNYKKSDTVREAADRIYAELLAAGADVLLDDRDERAGVLLND 549

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 550 SELLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIVARVTASLN 598


>gi|297808713|ref|XP_002872240.1| AT5g26830/F2P16_90 [Arabidopsis lyrata subsp. lyrata]
 gi|297318077|gb|EFH48499.1| AT5g26830/F2P16_90 [Arabidopsis lyrata subsp. lyrata]
          Length = 713

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 161/445 (36%), Gaps = 39/445 (8%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E  + D  +   K  L     HQ S G Y +LPLG +  + +   I+++
Sbjct: 304 KQLKKYLQFLEEAKKYDHRLLGQKQELF--FSHQLSPGSYFFLPLGTRVYNRLMDFIKKQ 361

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + +  LW  SG  D+Y   M    +   +     P +      IF+ 
Sbjct: 362 YWQRGYTEVITPNMYNMALWETSGHADNYKDNMFTF-NIEKQEFGLKPMNCPGHCLIFQH 420

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR LP       +  R+E      G+ R R F   DA+ F  T +  +     +  
Sbjct: 421 RVRSYRELPMRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTTEQVKEE-VQGVLE 479

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G     ++  + P                  +     +  D          
Sbjct: 480 FIDYVYKVFGFTY-ELKLSTRP-----------------EKYLGELETWDKAEADLKEAI 521

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +       + E   A Y    D+    + D++    + +   ++    F    +++L  +
Sbjct: 522 EAFGKPLVLNEGDGAFYGPKIDI---TVSDAMNRKFQCATLQLD----FQLPIRFNLEYA 574

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A       K   V +    +G++  + A++    +     WP  ++P +  +  I    Q
Sbjct: 575 AE--DEAKKAKPVMIHRAVLGSVERMFAILL---EHYKGKWPFWISPRQAIVCPISEKSQ 629

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 EK+   +   G  +  D    +I  +   A L  +   ++VG    +  +V ++
Sbjct: 630 ---KYAEKVQKEIHDAGFYIDADLTDRKIDKKVREAQLAQYNYILVVGETEAATGQVSVR 686

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R +      S+E+++     + + 
Sbjct: 687 LRDSAAHSVKSIEDLLEEFKAKIAE 711


>gi|288928013|ref|ZP_06421860.1| threonine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330847|gb|EFC69431.1| threonine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 654

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 148/444 (33%), Gaps = 36/444 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L      +  KG+  WLP G +    +  ++R+ Q R 
Sbjct: 232 EYLVMLEEAKKRDHRKIGKEMELFM-FSERVGKGLPIWLPKGTELRLRLQNMLRKIQKRF 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G  E+  P + S +L+V SG Y  YGK+  +       D+  +  P +     ++F    
Sbjct: 291 GYQEVITPHIGSKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEVFAWKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    +R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 351 RSYKDLPLRIAEFGTVYRYEKSGELHGLTRVRSFTQDDAHIFCRPEQVKNE-FLRVMDII 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F          +                      T+   S +  +    +      +
Sbjct: 410 QAVFKIFHFDDFEAQISLRD-------------PKNTTKYIGSDEVWEESEQAIIDACKE 456

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I     A Y    D     + D++    ++    ++                  
Sbjct: 457 KGLDAKIAYGEAAFYGPKLDFM---IKDAIGRRWQLGTIQVDYNLP--------ERFKLE 505

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +     G+M    AV+     G   +W           + I    + 
Sbjct: 506 YTAEDNTKKTPVMVHRAPFGSMERFTAVLIEHTAGHFPLW------LIPDQVAILPISEK 559

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +++      VG     D   E+IG +    ++   P  V+VG K  ++  V ++ 
Sbjct: 560 YNDYAQRVAKYFDSVGVRATLDVRNEKIGRKIRDNEIKRVPYMVVVGEKEAAEGLVSMRK 619

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           +  G +  MS+EE     +   + 
Sbjct: 620 QGGGEQATMSMEEFAKRINDEVAT 643


>gi|240013893|ref|ZP_04720806.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae DGI18]
 gi|240016334|ref|ZP_04722874.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae FA6140]
 gi|240121462|ref|ZP_04734424.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID24-1]
 gi|260440251|ref|ZP_05794067.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
          Length = 570

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 116/235 (49%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 234



 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPEN--K 275
           F  K + DF               +     +     A      D+ N    D  P+   +
Sbjct: 341 FTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGR 400

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D 
Sbjct: 401 LKLARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDE 460

Query: 336 KGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           KGIIW  ++APF++ ++ +        R+A ++IYA L   G DV  DD  E+ G     
Sbjct: 461 KGIIWTKAMAPFEVVIVPMNYKKSDTVREAADRIYAELLAAGADVLLDDRDERAGVLLND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 521 SELLGIPHRIVIGDRALKEGNVEYAERRGNEAQAVAIGEIVARVTASLN 569


>gi|194098918|ref|YP_002001983.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|291043544|ref|ZP_06569260.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|293398861|ref|ZP_06643026.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae F62]
 gi|193934208|gb|ACF30032.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|291012007|gb|EFE03996.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|291610275|gb|EFF39385.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae F62]
          Length = 599

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 116/235 (49%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 30  MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 89

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 90  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 149

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 150 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 209

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 210 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 263



 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPEN--K 275
           F  K + DF               +     +     A      D+ N    D  P+   +
Sbjct: 370 FTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGR 429

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D 
Sbjct: 430 LKLARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDE 489

Query: 336 KGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           KGIIW  ++APF++ ++ +        R+A ++IYA L   G DV  DD  E+ G     
Sbjct: 490 KGIIWTKAMAPFEVVIVPMNYKKSDTVREAADRIYAELLAAGADVLLDDRDERAGVLLND 549

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 550 SELLGIPHRIVIGDRALKEGNVEYAERRGNEAQAVAIGEIVARVTASLN 598


>gi|28899107|ref|NP_798712.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364768|ref|ZP_05777355.1| proline--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|260876810|ref|ZP_05889165.1| proline--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|260895895|ref|ZP_05904391.1| proline--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|81839761|sp|Q87MC3|SYP_VIBPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28807331|dbj|BAC60596.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308089375|gb|EFO39070.1| proline--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|308091476|gb|EFO41171.1| proline--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|308115298|gb|EFO52838.1| proline--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|328474355|gb|EGF45160.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus 10329]
          Length = 571

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 112/237 (47%), Positives = 150/237 (63%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG  S EF VLAD+GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLADSGEDLIAF-STESDYAANIEKA 236



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  G  YS  M+ +  G DGK+  ++M
Sbjct: 382 GQVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGNVYSEAMNCSVLGPDGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +     +  ++A EK+YA L+
Sbjct: 442 GCYGIGVSRVVASAIEQNHDKYGIIWPDAIAPFQVAIVPMNMHKSERVKEAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E K+R TG +  +++ +
Sbjct: 502 AMGIEVLFDDRKERPGVMFSDIELIGIPHTIVIGDRSMDEGNFEYKNRRTGEKTPVAMAD 561

Query: 434 VINYASHRFS 443
           ++ +   +  
Sbjct: 562 IVEHVKSQLK 571


>gi|15640891|ref|NP_230522.1| prolyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121585725|ref|ZP_01675520.1| prolyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121728341|ref|ZP_01681371.1| prolyl-tRNA synthetase [Vibrio cholerae V52]
 gi|147673158|ref|YP_001216355.1| prolyl-tRNA synthetase [Vibrio cholerae O395]
 gi|153819016|ref|ZP_01971683.1| prolyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|153823083|ref|ZP_01975750.1| prolyl-tRNA synthetase [Vibrio cholerae B33]
 gi|227081051|ref|YP_002809602.1| prolyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229505518|ref|ZP_04395028.1| prolyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229510812|ref|ZP_04400291.1| prolyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229517932|ref|ZP_04407376.1| prolyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229608537|ref|YP_002879185.1| prolyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254848011|ref|ZP_05237361.1| prolyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255744669|ref|ZP_05418620.1| prolyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262161198|ref|ZP_06030309.1| prolyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|262168701|ref|ZP_06036396.1| prolyl-tRNA synthetase [Vibrio cholerae RC27]
 gi|81858145|sp|Q9KTM7|SYP_VIBCH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|172047427|sp|A5F340|SYP_VIBC3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782925|sp|C3LTC5|SYP_VIBCM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|9655329|gb|AAF94037.1| prolyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121550088|gb|EAX60104.1| prolyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121629396|gb|EAX61826.1| prolyl-tRNA synthetase [Vibrio cholerae V52]
 gi|126510449|gb|EAZ73043.1| prolyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|126519409|gb|EAZ76632.1| prolyl-tRNA synthetase [Vibrio cholerae B33]
 gi|146315041|gb|ABQ19580.1| prolyl-tRNA synthetase [Vibrio cholerae O395]
 gi|227008939|gb|ACP05151.1| prolyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|227012695|gb|ACP08905.1| prolyl-tRNA synthetase [Vibrio cholerae O395]
 gi|229344647|gb|EEO09621.1| prolyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229350777|gb|EEO15718.1| prolyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229357741|gb|EEO22658.1| prolyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229371192|gb|ACQ61615.1| prolyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254843716|gb|EET22130.1| prolyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255737700|gb|EET93094.1| prolyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262022819|gb|EEY41525.1| prolyl-tRNA synthetase [Vibrio cholerae RC27]
 gi|262028948|gb|EEY47601.1| prolyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
          Length = 571

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 114/237 (48%), Positives = 153/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/190 (35%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  GT YS  M+     ++GK+  ++M
Sbjct: 382 GKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +     +  + A EK+YA L+
Sbjct: 442 GCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E K+R  G +E +++E 
Sbjct: 502 AAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFEYKNRRQGEKEAVAMES 561

Query: 434 VINYASHRFS 443
           +I++   + +
Sbjct: 562 IIDFIQAKLA 571


>gi|300812909|ref|ZP_07093302.1| threonine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496107|gb|EFK31236.1| threonine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 643

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 154/433 (35%), Gaps = 34/433 (7%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      +   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRIIERYIVDKEVAAGYQHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y ++M    D  +  M    P +      I++ HI+SYR LP    
Sbjct: 296 MNLDAYKTSGHWAHYREDMFPPMDMGEGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +  +  + +     + ++H   +  
Sbjct: 356 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQEE-FARTLQIIMDVYHDFDIND 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 415 YYFRLS-------------YRDPKNTDKYFANDEMWERSQSMLKAAMDDMGLDYVEAEGE 461

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      ++ GADG++H  
Sbjct: 462 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----ELSYIGADGEEHRP 510

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            M     G +  +   I    +     +P  +AP +  +I +        D  +K+   L
Sbjct: 511 VMIHR--GIVGTMERFIAYLTEIYKGAFPTWLAPVQAEIIPVNL--DAHSDYAKKVRDEL 566

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G     D   E++G +   +     P  +++G   ++   V ++   T  +   SL 
Sbjct: 567 VAKGFRAEIDFRNEKLGYKIRESQTQKVPYTLVLGDDEMNAGTVNVRPYGTEEQNSESLA 626

Query: 433 EVINYASHRFSNN 445
           E ++  S   ++ 
Sbjct: 627 EFMDKLSKDVASY 639


>gi|15081626|gb|AAK82468.1| AT5g26830/F2P16_90 [Arabidopsis thaliana]
 gi|29028762|gb|AAO64760.1| At5g26830/F2P16_90 [Arabidopsis thaliana]
          Length = 676

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 158/442 (35%), Gaps = 39/442 (8%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E  + D  +   K  L     HQ S G Y +LPLG +  + +   I+ +
Sbjct: 267 KQLKKYLQFLEEAKKYDHRLLGQKQELF--FSHQLSPGSYFFLPLGTRVYNRLMDFIKNQ 324

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + + +LW  SG  D+Y   M    +   +     P +      IF+ 
Sbjct: 325 YWHRGYTEVITPNMYNMELWQTSGHADNYKDNMFTF-NIEKQEFGLKPMNCPGHCLIFQH 383

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR LP       +  R+E      G+ R R F   DA+ F  T +        +  
Sbjct: 384 RVRSYRELPMRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTTEQVKGE-VQGVLE 442

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G     ++  + P                  +     +  D          
Sbjct: 443 FIDYVYKVFGFTY-ELKLSTRP-----------------EKYLGDLETWDKAEADLKEAI 484

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +       + E   A Y    D+    + D++    + +   ++    F    +++L  +
Sbjct: 485 EAFGKPLVLNEGDGAFYGPKIDI---TVSDAMNRKFQCATLQLD----FQLPIRFNLEYA 537

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A       K   V +    +G++  + A++    +     WP  ++P +  +  I    Q
Sbjct: 538 AE--DEAKKSRPVMIHRAVLGSVERMFAILL---EHYKGKWPFWISPRQAIVCPISEKSQ 592

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 EK+  ++   G  V  D    +I  +   A L  +   ++VG    +  +V ++
Sbjct: 593 ---QYAEKVQKQIKDAGFYVDADLTDRKIDKKVREAQLAQYNYILVVGETEAATGQVSVR 649

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R        S+E+++     +
Sbjct: 650 VRDNAAHSVKSIEDLLEEFKAK 671


>gi|307154337|ref|YP_003889721.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 7822]
 gi|306984565|gb|ADN16446.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 7822]
          Length = 600

 Score =  233 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 125/276 (45%), Positives = 161/276 (58%), Gaps = 7/276 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIKSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P LQ ++LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNAIGAQECLLPQLQPSELWKESGRWDTYTKAEGIMFALGDRQERELGLGPTHEEVITFI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       K +Y  M
Sbjct: 121 AREMIRSYRQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHTDETSLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  +F R GL    + A+SG IGG  S EF+VLAD GE +V  + D  ++    E  
Sbjct: 181 DQAYRNMFRRCGLAFRGVEADSGAIGGSGSQEFMVLADAGEDEVLYTADG-NYAANVEKA 239

Query: 238 ---DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                D   S     E+   P   T +   E L  S
Sbjct: 240 VSLPPDVQASPFKSYEKRETPGTDTIEKLAEFLNCS 275



 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 64/196 (32%), Positives = 109/196 (55%), Gaps = 3/196 (1%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSL--PENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +  +Q+  P         ++   ++  P     SARGIEVGHIF  GTKYS  M AT+  
Sbjct: 400 NWGKQFKLPELVVDVRKAKQGDRAVHDPTQTLQSARGIEVGHIFQLGTKYSQAMGATYTN 459

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G++  + MG YG+G  R+  A +E S+D  GIIWP ++AP+   ++    +D +  + 
Sbjct: 460 EQGEEIPLVMGCYGMGVSRLAQAAVEQSYDKDGIIWPVAIAPYHAIVVIPDLNDPLQVET 519

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            EK+Y  L++VG +   DD   + G +F  ++L+G P +++ G + + D KVE+  R + 
Sbjct: 520 AEKLYQELNQVGVETLLDDRDARAGVKFKDSELIGIPYRIVTG-RSLKDGKVEVVERASK 578

Query: 425 IREDMSLEEVINYASH 440
             +D+++EEV++    
Sbjct: 579 KSQDIAIEEVVSTLQQ 594


>gi|229180095|ref|ZP_04307439.1| Prolyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|228603304|gb|EEK60781.1| Prolyl-tRNA synthetase [Bacillus cereus 172560W]
          Length = 566

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 166/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
                +   E+     A       E++
Sbjct: 240 ATYKKSDEAEKALEKVATPDQKAIEEV 266



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|301066747|ref|YP_003788770.1| threonyl-tRNA synthetase [Lactobacillus casei str. Zhang]
 gi|300439154|gb|ADK18920.1| Threonyl-tRNA synthetase [Lactobacillus casei str. Zhang]
          Length = 657

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 164/446 (36%), Gaps = 40/446 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +    D  +    L L    +  +   G+  W+P G      +   I +++   G  
Sbjct: 232 RRQEAAEHDHRVIGRDLDLF--FVDPKVGAGLPYWMPNGATIRRVIERYIIDKEIADGYE 289

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + DL+  SG +D Y ++M    D  D  M    P +      I+  HI+SYR
Sbjct: 290 HVYTPVLANLDLYKTSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++
Sbjct: 350 ELPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQEE-FKKILRLIMDVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
               +     R                  D   T+ +   D M     S      DD+  
Sbjct: 409 EDFNITDYSFRLS--------------YRDPKNTEKYFDDDEMWTRSQSMLKGAMDDLKL 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    D+  +    +L  ++ +S   ++    F    ++    + T+ G
Sbjct: 455 DYYEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----NLTYVG 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG++H   M     G +  +   I    +     +P  +AP +  LI +   + +  D 
Sbjct: 504 KDGEEHRPVMIHR--GIVGTMERFIAYLTEIYKGAFPTWLAPTQAVLIPVN--NDLHLDY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT- 423
             +I  ++   G  V  DD  E++G +   A     P  V+VG K ++D+ V ++     
Sbjct: 560 VNRIKKQMLAAGLRVKVDDRNEKMGYKIREAQTKKIPYTVVVGDKELNDAAVSVRRYGDE 619

Query: 424 ---GIREDMSLEEVINYASHRFSNNR 446
                  +M ++ ++    +   + +
Sbjct: 620 HTEEEAGNMFIDALVAEVKNYSRDGK 645


>gi|210633121|ref|ZP_03297688.1| hypothetical protein COLSTE_01601 [Collinsella stercoris DSM 13279]
 gi|210159275|gb|EEA90246.1| hypothetical protein COLSTE_01601 [Collinsella stercoris DSM 13279]
          Length = 569

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 110/227 (48%), Positives = 161/227 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P L+E+P +AE+ASH+LMLR G+I + + G+YS+LPL  ++L  +  I+R+E
Sbjct: 1   MKMSKLYAPTLKEDPAEAELASHRLMLRAGLIRKQAAGLYSYLPLAWRSLRKIEDIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +  A +W ESGRY++YG E++R+ DR+D+  + GPTHEE +TD+ ++
Sbjct: 61  MDAAGAQELLMPIMVDAQVWRESGRYNAYGPELMRIDDRHDREFVLGPTHEETVTDLIKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF+ T E  + +Y++M  +
Sbjct: 121 ELKSYKQLPVNLYQIQDKFRDEMRPRFGLMRGREFIMKDGYSFNATQESLQETYDEMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y  I  R GLK++P+ A+SG IGGD S EF+ LAD GE  +      
Sbjct: 181 YANICERCGLKALPVVADSGQIGGDTSVEFMALADAGEAALVYCDAC 227



 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 107/191 (56%), Gaps = 2/191 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A  D+      D  P        ARGIEV  +F  GTKYS  M ATF   +G++    MG
Sbjct: 378 AWEDLITVIAGDPCPHCGASLAGARGIEVSQVFQLGTKYSEAMGATFADENGEEKPFLMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG+G  R +AA +E  HDG GIIWP S+AP+++S++ +    + C + C ++   L   
Sbjct: 438 CYGVGVSRTLAASVEQHHDGHGIIWPVSIAPYEVSIMPLDPTIEECAEVCARLTDELCAA 497

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD   + G +FA  DL+GFP Q+++G + + +  VE+K R TG RED++++EV 
Sbjct: 498 GIEVIVDDRDIRPGVKFADNDLMGFPYQIVLGKRGLKNGTVELKDRATGEREDVAIDEVA 557

Query: 436 NYASHRFSNNR 446
              +    + R
Sbjct: 558 AKVADLVISQR 568


>gi|191638692|ref|YP_001987858.1| threonyl-tRNA synthetase [Lactobacillus casei BL23]
 gi|239632065|ref|ZP_04675096.1| ser-tRNA(Thr) hydrolase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|238693055|sp|B3WF49|SYT_LACCB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190712994|emb|CAQ67000.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Lactobacillus casei BL23]
 gi|239526530|gb|EEQ65531.1| ser-tRNA(Thr) hydrolase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|327382733|gb|AEA54209.1| Threonyl-tRNA synthetase [Lactobacillus casei LC2W]
 gi|327385920|gb|AEA57394.1| Threonyl-tRNA synthetase [Lactobacillus casei BD-II]
          Length = 657

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 164/446 (36%), Gaps = 40/446 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +    D  +    L L    +  +   G+  W+P G      +   I +++   G  
Sbjct: 232 RRQEAAEHDHRVIGRDLDLF--FVDPKVGAGLPYWMPNGATIRRVIERYIIDKEIADGYE 289

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + DL+  SG +D Y ++M    D  D  M    P +      I+  HI+SYR
Sbjct: 290 HVYTPVLANLDLYKTSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++
Sbjct: 350 ELPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQEE-FKKILRLIMDVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
               +     R                  D   T+ +   D M     S      DD+  
Sbjct: 409 EDFNITDYSFRLS--------------YRDPKNTEKYFDDDEMWTRSQSMLKGAMDDLKL 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    D+  +    +L  ++ +S   ++    F    ++    + T+ G
Sbjct: 455 DYYEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----NLTYVG 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG++H   M     G +  +   I    +     +P  +AP +  LI +   + +  D 
Sbjct: 504 KDGEEHRPVMIHR--GIVGTMERFIAYLTEIYKGAFPTWLAPTQAVLIPVN--NDLHLDY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT- 423
             +I  ++   G  V  DD  E++G +   A     P  V+VG K ++D+ V ++     
Sbjct: 560 VNRIKKQMLAAGLRVKVDDRNEKMGYKIREAQTKKIPYTVVVGDKELNDAAVSVRRYGDE 619

Query: 424 ---GIREDMSLEEVINYASHRFSNNR 446
                  +M ++ ++    +   + +
Sbjct: 620 HTEEEAGNMFIDALVAEVKNYSRDGK 645


>gi|116514446|ref|YP_813352.1| threonyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093761|gb|ABJ58914.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325126146|gb|ADY85476.1| Threonyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 643

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 154/433 (35%), Gaps = 34/433 (7%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      +   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKAGAGLPYWMPKGATIRRIIERYIVDKEVAAGYQHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y ++M    D  +  M    P +      I++ HI+SYR LP    
Sbjct: 296 MNLDAYKTSGHWAHYREDMFPPMDMGEGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +  +  + +     + ++H   +  
Sbjct: 356 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQEE-FARTLQIIMDVYHDFDIND 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 415 YYFRLS-------------YRDPKNTDKYFANDEMWERSQSMLKAAMDDMGLDYVEAEGE 461

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      ++ GADG++H  
Sbjct: 462 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----ELSYIGADGEEHRP 510

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            M     G +  +   I    +     +P  +AP +  +I +        D  +K+   L
Sbjct: 511 VMIHR--GIVGTMERFIAYLTEIYKGAFPTWLAPVQAEIIPVNL--DAHSDYAKKVRDEL 566

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G     D   E++G +   +     P  +++G   ++   V ++   T  +   SL 
Sbjct: 567 VAKGFRAEIDFRNEKLGYKIRESQTQKVPYTLVLGDDEMNAGTVNVRPYGTEEQNSESLA 626

Query: 433 EVINYASHRFSNN 445
           E ++  S   +N 
Sbjct: 627 EFMDKLSKDVANY 639


>gi|163803792|ref|ZP_02197646.1| prolyl-tRNA synthetase [Vibrio sp. AND4]
 gi|159172411|gb|EDP57283.1| prolyl-tRNA synthetase [Vibrio sp. AND4]
          Length = 571

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 112/237 (47%), Positives = 151/237 (63%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 110/190 (57%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  G  YS  M+    G DGK+  ++M
Sbjct: 382 GQIEDLRNVVEGDPSPCGQGTLMLKRGIEVGHIFQLGNVYSQAMNCGVLGPDGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +     +  ++A EK+YA L+
Sbjct: 442 GCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHKSEEVKEAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E K+R +G +  +++ +
Sbjct: 502 AMGVEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMKEGNFEYKNRRSGEKTAVAMTD 561

Query: 434 VINYASHRFS 443
           ++ +   +  
Sbjct: 562 IVEHVKAQLQ 571


>gi|300787200|ref|YP_003767491.1| threonyl-tRNA synthetase [Amycolatopsis mediterranei U32]
 gi|299796714|gb|ADJ47089.1| threonyl-tRNA synthetase [Amycolatopsis mediterranei U32]
          Length = 675

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 61/442 (13%), Positives = 129/442 (29%), Gaps = 36/442 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  + P G      +    R      G
Sbjct: 253 YLERIAEAERRDHRKLGAELDLFS-FPEEIGSGLPVFHPKGGIIRRELENYSRRRHEEAG 311

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              ++ P +   +L+  SG    Y   M      +++       +  +   IFRS  +SY
Sbjct: 312 YEFVNTPHISKGELFHTSGHLPYYADTMFPPVQFDEENYYLKAMNCPMHNLIFRSRGRSY 371

Query: 126 RNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP   ++    +R E      G+ R R   M D++ +    +        +    L +
Sbjct: 372 RELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDSHIYCTKEQMPGEL-RSLLKFVLDL 430

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               GL    +   +         E                   +    +      D   
Sbjct: 431 LADYGLSDFYLELSTRGDSDKFIGE---------------DWEWEEATETLRQAAVDSGL 475

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y       + +  D++    ++S   ++           +      +  
Sbjct: 476 ELVPDPGGAAFYGPKI---SVQAKDAIGRTWQMSTIQLDFNQ--------NKRFGLEYTA 524

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +     G++     V+    +     +P  ++P ++  I I        +
Sbjct: 525 PDGSRQTPVMIHRALFGSIERFFGVLT---EHYAGAFPAWLSPVQVVGIPIT---ADQVE 578

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L   G     D   +++  +         P  ++ G+K V    V  + R  
Sbjct: 579 YLQDVEKALRAKGLRAEVDASDDRMQKKIRTHTTQKVPFMLLAGAKDVEAGAVSFRFRDG 638

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    + +E+ +   +      
Sbjct: 639 GQINGVPVEKAVEAIAEWVERR 660


>gi|229013002|ref|ZP_04170167.1| Prolyl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|228748256|gb|EEL98116.1| Prolyl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 566

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 166/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+++LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQASELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 106/190 (55%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP SVAPF + +I +       R+    IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKSVAPFHVHVIPVNMKSDAQREMGGNIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|313124186|ref|YP_004034445.1| threonyl-tRNA synthetase 1 [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280749|gb|ADQ61468.1| Threonyl-tRNA synthetase 1 [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 643

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 154/433 (35%), Gaps = 34/433 (7%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      +   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRIIERYIVDKEVAAGYQHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y ++M    D  +  M    P +      I++ HI+SYR LP    
Sbjct: 296 MNLDAYKTSGHWAHYREDMFPPMDMGEGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +  +  + +     + ++H   +  
Sbjct: 356 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQEE-FARTLQIIMDVYHDFDIND 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 415 YYFRLS-------------YRDPKNTDKYFANDEMWERSQSMLKAAMDDMGLDYVEAEGE 461

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      ++ GADG++H  
Sbjct: 462 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----ELSYIGADGEEHRP 510

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            M     G +  +   I    +     +P  +AP +  +I +        D  +K+   L
Sbjct: 511 VMIHR--GIVGTMERFIAYLTEIYKGAFPTWLAPVQAEIIPVNL--DAHSDYAKKVRDEL 566

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G     D   E++G +   +     P  +++G   ++   V ++   T  +   SL 
Sbjct: 567 VAKGFRAEIDFRNEKLGYKIRESQTQKVPYTLVLGDDEMNAGTVNVRPYGTEEQNSESLA 626

Query: 433 EVINYASHRFSNN 445
           E ++  S   ++ 
Sbjct: 627 EFMDKLSKDVASY 639


>gi|317052052|ref|YP_004113168.1| prolyl-tRNA synthetase [Desulfurispirillum indicum S5]
 gi|316947136|gb|ADU66612.1| prolyl-tRNA synthetase [Desulfurispirillum indicum S5]
          Length = 572

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 118/238 (49%), Positives = 152/238 (63%), Gaps = 1/238 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FL   +E P DAE+ SH+LMLR G I + + GIYS+LPL  + L  +  IIREE
Sbjct: 1   MRYSQAFLFTAKETPSDAEVISHQLMLRGGYIKKTAAGIYSYLPLAWRVLRKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA E+ +P    A+LW+ESGR+  YG E+LR  DR+ +    GPTHEE +TDI R 
Sbjct: 61  MTREGAEELMMPAALPAELWMESGRWQKYGPELLRFQDRHGRDFCIGPTHEEAITDIVRH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSFD+  E S  +Y KM+ +
Sbjct: 121 AVSSYRHLPKNLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFDVDDEASATTYEKMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           Y  IF R GL    + A+SG IGG  SHEF+VLA++GE  +        +    E   
Sbjct: 181 YSSIFRRCGLSFKAVEADSGQIGGSFSHEFMVLANSGEDGIASCSKCS-YAANLEKAF 237



 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 100/189 (52%), Gaps = 4/189 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+      D  P    +    RGIEVGH+F  GT YS  M AT+   +GK+  + MG
Sbjct: 378 RFADISTVIEGDCCPRCHSELNILRGIEVGHVFRLGTVYSQSMKATYLDRNGKEQPMVMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
            YGIG  R  AA IE +HD KGIIWP S+AP+++ +  +    D+  R   + +Y RL  
Sbjct: 438 CYGIGVGRTAAAAIEQNHDDKGIIWPMSIAPYQVVICTVNPSRDEQSRATADSLYERL-A 496

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             CDV +DD  E+ G +F  ++L+G PL++ +  K +  S VEI  R +G +    LE +
Sbjct: 497 ATCDVLYDDRDERPGVKFIDSELIGIPLRLTISQKTLEQSSVEITIRKSGEKYLHPLETI 556

Query: 435 INYASHRFS 443
               +    
Sbjct: 557 SEEVARLIQ 565


>gi|239999200|ref|ZP_04719124.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|240080454|ref|ZP_04724997.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|240113176|ref|ZP_04727666.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|240115935|ref|ZP_04729997.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|240118232|ref|ZP_04732294.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|240123781|ref|ZP_04736737.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|240125970|ref|ZP_04738856.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|240128484|ref|ZP_04741145.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|254493969|ref|ZP_05107140.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268603943|ref|ZP_06138110.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268682406|ref|ZP_06149268.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268684564|ref|ZP_06151426.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|226513009|gb|EEH62354.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268588074|gb|EEZ52750.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268622690|gb|EEZ55090.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268624848|gb|EEZ57248.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
          Length = 570

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 116/235 (49%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 234



 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPEN--K 275
           F  K + DF               +     +     A      D+ N    D  P+   +
Sbjct: 341 FTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGR 400

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D 
Sbjct: 401 LKLARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDE 460

Query: 336 KGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           KGIIW  ++APF++ ++ +        R+A ++IYA L   G DV  DD  E+ G     
Sbjct: 461 KGIIWTKAMAPFEVVIVPMNYKKSDTVREAADRIYAELLAAGADVLLDDRDERAGVLLND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 521 SELLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIVARVTASLN 569


>gi|298499001|ref|ZP_07008808.1| prolyl-tRNA synthetase [Vibrio cholerae MAK 757]
 gi|297543334|gb|EFH79384.1| prolyl-tRNA synthetase [Vibrio cholerae MAK 757]
          Length = 571

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 114/237 (48%), Positives = 153/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 68/190 (35%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  GT YS  M+     ++GK+  ++M
Sbjct: 382 GKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +     +  + A EK+YA L+
Sbjct: 442 GCYGIGVSRVVAAAIEKNHDDYGIIWPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E K+R  G +E +++E 
Sbjct: 502 AAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFEYKNRRQGEKEAVAMES 561

Query: 434 VINYASHRFS 443
           +I++   + +
Sbjct: 562 IIDFIQAKLA 571


>gi|238855713|ref|ZP_04646009.1| threonine--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|260665499|ref|ZP_05866346.1| threonyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|282934764|ref|ZP_06340004.1| threonine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|313471817|ref|ZP_07812309.1| threonine--tRNA ligase [Lactobacillus jensenii 1153]
 gi|238831659|gb|EEQ24000.1| threonine--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|239528573|gb|EEQ67574.1| threonine--tRNA ligase [Lactobacillus jensenii 1153]
 gi|260560767|gb|EEX26744.1| threonyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|281301175|gb|EFA93479.1| threonine--tRNA ligase [Lactobacillus jensenii 208-1]
          Length = 643

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 153/434 (35%), Gaps = 36/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      +   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVIERYIIDKELADGYQHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y ++M    D  D  M    P +      +++ HI+SYR LP    
Sbjct: 296 MNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++    +  
Sbjct: 356 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALEQVQEE-FAKILKLIMDVYKDFDITD 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 415 YYFRLS-------------YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGE 461

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      ++ G DG++H  
Sbjct: 462 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERFD----LSYVGQDGEEHRP 510

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G M    A +   + G    W          +  I  +     +  +K+   
Sbjct: 511 VMIHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PEQVEIIPVNLDAHGEYAKKVRDE 565

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G     D   E++G +   +     P  +++G   ++ + V ++   T  +E MSL
Sbjct: 566 LLKHGFRAEVDFRNEKMGYKIRESQTQKVPYTLVLGDDEMNSNAVNVRPYGTEKQESMSL 625

Query: 432 EEVINYASHRFSNN 445
           ++ IN       + 
Sbjct: 626 DQFINELQADVDSY 639


>gi|229815406|ref|ZP_04445738.1| hypothetical protein COLINT_02454 [Collinsella intestinalis DSM
           13280]
 gi|229808939|gb|EEP44709.1| hypothetical protein COLINT_02454 [Collinsella intestinalis DSM
           13280]
          Length = 569

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 109/227 (48%), Positives = 159/227 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  + P L+E+P +AE+ASH+LMLR GMI + + G+YS+LPL  ++L  +  I+R+E
Sbjct: 1   MKMSNLYAPTLKEDPAEAELASHRLMLRAGMIRKQAAGLYSYLPLAWRSLRKIEDIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +  A +W ESGRY+ YG E++R++DR+++  + GPTHEE +TD+ ++
Sbjct: 61  MDAAGAQELLMPIMVDAQVWRESGRYNVYGPELMRISDRHEREFVLGPTHEETVTDLIKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF+ T E  + +Y+ M  +
Sbjct: 121 ELKSYKQLPVNLYQIQDKFRDEMRPRFGLMRGREFIMKDGYSFNATQESLQETYDDMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y  I  R GLK++P+ A+SG IGGD S EF+ LAD GE  +      
Sbjct: 181 YANICERCGLKALPVVADSGQIGGDTSVEFMALADAGEAALVYCDAC 227



 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 109/191 (57%), Gaps = 2/191 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A  D+      D  P        ARGIEV  +F  GTKYS  M ATF   +G++    MG
Sbjct: 378 AWEDLITVVAGDPCPHCGAPLAGARGIEVSQVFQLGTKYSEAMGATFADENGEEKPFLMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG+G  R +AA +E  HD  GIIWP S+AP+++S++ +      C + C+++ A L + 
Sbjct: 438 CYGVGVSRTLAASVEQHHDENGIIWPVSIAPYEVSIMPLDPTIPECAEVCDRLTAELCEA 497

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD   + G +FA  DL+GFP Q+++G + + +  VE+K R TG RED++++EV 
Sbjct: 498 GIEVIVDDRDIRPGVKFADNDLMGFPYQIVLGKRGLKNGTVELKDRATGEREDVAIDEVA 557

Query: 436 NYASHRFSNNR 446
           +  +    + R
Sbjct: 558 SKVADLVISQR 568


>gi|30021908|ref|NP_833539.1| prolyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|81433856|sp|Q819Y4|SYP1_BACCR RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|29897464|gb|AAP10740.1| Prolyl-tRNA synthetase [Bacillus cereus ATCC 14579]
          Length = 566

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|15965178|ref|NP_385531.1| threonyl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|22654127|sp|Q92QB0|SYT_RHIME RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15074358|emb|CAC46004.1| Probable threonyl-tRNA synthetase [Sinorhizobium meliloti 1021]
          Length = 661

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 146/444 (32%), Gaps = 39/444 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L      +   G+  W   G +   ++ A +R      
Sbjct: 234 QYLHVLAEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHGKGWRIFQSLVAYMRRRLE-G 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFR 119
              E++ P +    LW  SG +  Y   M ++        +D+     P +      IF+
Sbjct: 291 DYQEVNAPQVLDKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIFK 350

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             +KSYR LP    +     R E      G+MR R F   DA+ F    + +        
Sbjct: 351 HGLKSYRELPVRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKIN- 409

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L ++   G K I ++  + P     S E    A+   T+V   +   +       T 
Sbjct: 410 DLILSVYEDFGFKEIVVKLSTRPEKRVGSDELWDRAEAVMTEVL--QTIEEQSEGRIKTG 467

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                     +    A Y    +     L D++    +     ++      FG       
Sbjct: 468 I---------LPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------- 508

Query: 299 SATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +      K   V +     G+M     ++  ++ G   +W           + +   
Sbjct: 509 -AFYIDSESEKRQPVMIHRAICGSMERFLGILLENYAGHMPLW------ISPLQVVVATI 561

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   ++  RL   G  V  D   E+I  +     +   P+ V+ G +   +  V 
Sbjct: 562 TSEADDYGREVAERLRDAGLTVETDFRNEKINYKVREHSVTKVPVIVVCGRREAEERSVN 621

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           I+   +  +  MSL+E +   S  
Sbjct: 622 IRRLGSQAQTAMSLDEAVASLSAE 645


>gi|148256517|ref|YP_001241102.1| threonyl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
 gi|146408690|gb|ABQ37196.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Bradyrhizobium
           sp. BTAi1]
          Length = 688

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 140/444 (31%), Gaps = 41/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W P G      + A +R      G
Sbjct: 264 YLKQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHPKGWSIFQALIAYMRRRL--AG 319

Query: 66  -AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFR 119
              E++ P +    LW  SG ++ Y + M       D     +     P +      IF+
Sbjct: 320 EYDEVNAPQILDKSLWETSGHWNWYRENMFAAQSAGDEAEDKRWFALKPMNCPGHVQIFK 379

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + ++       
Sbjct: 380 HGLKSYRDLPLRLAEFGVVHRYEASGAMHGLMRVRGFTQDDAHIFCTEDQLAEECLKIND 439

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +             + ++  + P     + E    A+            M   +      
Sbjct: 440 LILSTYSDFGFEGELTVKLSTRPEKRVGTDEMWDHAE----------RVMATVLNEIKAQ 489

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            ++I +   I     A Y    +     L D++  + +     ++      FG       
Sbjct: 490 RNNIRTE--INPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVDFNLPERFG------- 537

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A +  ADG     V +     G+M     ++   + G   +W         ++      
Sbjct: 538 -AFYIDADGAKKAPVMVHRAICGSMERFIGILIEHYAGSFPLWLAPTQVVVTTIT----- 591

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  +++ A L + G     D   E+I  +     +   P  ++VG K      V 
Sbjct: 592 -SEGDEYAKQVLAALRRAGLRAEIDLRNEKINYKVREHSMQKIPALLVVGKKEAETHSVS 650

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++      +  M   + I      
Sbjct: 651 VRRLGRDGQTVMPTADAIAALVDE 674


>gi|153835582|ref|ZP_01988249.1| prolyl-tRNA synthetase [Vibrio harveyi HY01]
 gi|148867822|gb|EDL67058.1| prolyl-tRNA synthetase [Vibrio harveyi HY01]
          Length = 571

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 112/237 (47%), Positives = 151/237 (63%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 110/190 (57%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  G  YS  M+    G DGK+  ++M
Sbjct: 382 GQVEDLRNVVEGDPSPCGQGTLMLKRGIEVGHIFQLGNVYSQAMNCGVLGPDGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +     +  ++A EK+YA L+
Sbjct: 442 GCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHKSEEVKEAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E K+R +G +  +++ +
Sbjct: 502 AMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMKEGNFEYKNRRSGEKTAVAMAD 561

Query: 434 VINYASHRFS 443
           ++ +   +  
Sbjct: 562 IVEHVKAQLQ 571


>gi|46907545|ref|YP_013934.1| prolyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093943|ref|ZP_00231680.1| prolyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|254824622|ref|ZP_05229623.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|254852630|ref|ZP_05241978.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|255522074|ref|ZP_05389311.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J1-175]
 gi|300765441|ref|ZP_07075423.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|81830231|sp|Q720A3|SYP_LISMF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|46880813|gb|AAT04111.1| prolyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47017681|gb|EAL08477.1| prolyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|258605946|gb|EEW18554.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|293593860|gb|EFG01621.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|300513878|gb|EFK40943.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|328468602|gb|EGF39602.1| prolyl-tRNA synthetase [Listeria monocytogenes 1816]
          Length = 568

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 124/294 (42%), Positives = 167/294 (56%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S    D+   +E     
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSD-ASDYAANTEMAPVL 239

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                   L   +E+   P   +     E L   + +  +     ++   I   
Sbjct: 240 YMEKKSHELEKDMEKVATPDQKSIADIVEFLEVPIEKTMKSMLYQVDDEVIMVL 293



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 101/180 (56%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 383 DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G +W   ++PF + LI +    +      E +Y+ L   G  
Sbjct: 443 IGVSRILSAIAEQSNDENGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYSSLQDAGFS 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N  
Sbjct: 503 VLIDDRAERAGVKFADADLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTL 561


>gi|296314467|ref|ZP_06864408.1| proline--tRNA ligase [Neisseria polysaccharea ATCC 43768]
 gi|296838764|gb|EFH22702.1| proline--tRNA ligase [Neisseria polysaccharea ATCC 43768]
          Length = 570

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTAYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANVE 234



 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPE--NK 275
           F  K + DF               +     +     A      D+ N    D  P+   +
Sbjct: 341 FTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVIEGDISPDEQGR 400

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D 
Sbjct: 401 LKLARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDE 460

Query: 336 KGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     
Sbjct: 461 KGIIWTKTMAPFEVVIVPMNYKKSDAVREATDKIYAELLAAGADVLLDDRDERAGVLLND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 521 SELLGIPHRIVIGDRALKEGNVEYAERRDNEVQAVAIGEIVARVTASLN 569


>gi|228986962|ref|ZP_04147088.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228772740|gb|EEM21180.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 566

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDESGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|229157395|ref|ZP_04285473.1| Prolyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228626122|gb|EEK82871.1| Prolyl-tRNA synthetase [Bacillus cereus ATCC 4342]
          Length = 566

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 73/190 (38%), Positives = 106/190 (55%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDESGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R T   E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATAESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|192292254|ref|YP_001992859.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
 gi|192286003|gb|ACF02384.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
          Length = 687

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 140/443 (31%), Gaps = 38/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W   G     ++   +R       
Sbjct: 263 YLHQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHAKGWSLFQSLVGYMRRRL-AGD 319

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M       D     +     P +      IF+ 
Sbjct: 320 YDEVNAPQILDKVLWETSGHWEWYRENMFAAQSAGDDAEDKRWFALKPMNCPGHVQIFKH 379

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + ++       +
Sbjct: 380 GLKSYRDLPLRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVFCTEAQLAEECIKINDL 439

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                        + ++  + P     + E    A+        +    +      N   
Sbjct: 440 ILSTYSDFGFEGELTVKLSTRPEKRVGTDEMWDHAER-----VMATVLSEIKAKGGNRIK 494

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +I           A Y    +     L D++  + +     ++      FG        
Sbjct: 495 TEI------NPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVDFNLPERFG-------- 537

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +  ADG     V +     G+M     ++   + G   +W   V     ++       
Sbjct: 538 AFYIDADGAKKAPVMVHRAICGSMERFTGILIEHYAGNFPLWLAPVQVVVTTIT------ 591

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  +K+ A L K G     D   E+I  +     L   P  ++VG K      V +
Sbjct: 592 SEGDDYAKKVLAALRKAGLRADIDLRNEKINFKVREHSLAKVPALLVVGKKEAESHSVSV 651

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  ++ M  +E I      
Sbjct: 652 RRLGSEGQKVMPTDEAIAALVDE 674


>gi|327188321|gb|EGE55539.1| threonyl-tRNA synthetase protein [Rhizobium etli CNPAF512]
          Length = 668

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 144/447 (32%), Gaps = 46/447 (10%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      ++ L      +   G+  W   G +    + A +R       
Sbjct: 234 YLHMLAEAEKRDHRKLGREMDLF--HFQEEGPGVVFWHGKGWRIFQTLVAYMRRRL-AAD 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEML-----------RLADRNDKAMIYGPTHEEVM 114
             E++ P +    LW  SG +  Y + M               + +++     P +    
Sbjct: 291 YQEVNAPQVLDTSLWETSGHWGWYQENMFAVKSAHAMTHPEDKEADNRVFALKPMNCPGH 350

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHS 173
             IF+  +KSYR LP    +  L  R E      G+MR R F   DA+ F    + +   
Sbjct: 351 VQIFKHGLKSYRELPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAEC 410

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                   L ++   G K I ++  + P     S      A+   T V          I 
Sbjct: 411 LKIN-DLILSVYEDFGFKEIVVKLSTRPEKRVGSDALWDRAEAVMTDVL-------KTIE 462

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           +++        L        A Y    +     L D++    +     ++      FG  
Sbjct: 463 AQSEGRIKTGIL----PGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG-- 513

Query: 294 YSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
                 A +  ++ +      +     G+M     ++  +  G   +W   +     ++ 
Sbjct: 514 ------AFYIDSNSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLWVSPLQVVVATIT 567

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                         ++   L   G +V  D   E+I  +     +   P+ ++ G K   
Sbjct: 568 ------SEADAYGLEVAEALRDAGLNVETDFRNEKINYKIREHSVTKVPVIIVCGRKEAE 621

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYAS 439
           +  V I+   +  +  M L+  +   +
Sbjct: 622 ERTVNIRRLGSQDQVSMELDAAVESLT 648


>gi|312195608|ref|YP_004015669.1| threonyl-tRNA synthetase [Frankia sp. EuI1c]
 gi|311226944|gb|ADP79799.1| threonyl-tRNA synthetase [Frankia sp. EuI1c]
          Length = 662

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 65/439 (14%), Positives = 135/439 (30%), Gaps = 36/439 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R      G   ++ 
Sbjct: 258 EAEKRDHRRLGAELDLFS-FPTELGPGLAVFHPKGGAIRTVMEDYSRRRHIEAGYEFVNT 316

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P +  + L+  SG  D +   M               P +  +   IF+S  +SYR LP 
Sbjct: 317 PHITKSTLYEISGHLDWFADGMYPPMSLDGGTDYYLKPMNCPMHILIFKSRGRSYRELPL 376

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R R     DA+ F    +  +   +      L +    G
Sbjct: 377 RLFEFGTVYRYEKSGVVHGLTRVRGLTQDDAHLFCARDQLPEEL-DSTLKFVLGLLRDYG 435

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   + P                E +   + +  +          +       + 
Sbjct: 436 LTDFYLELSTRP----------------EGKAIGTDEEWEQATSLLREAAEKQDLELVMD 479

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++    F    ++ +   A       + 
Sbjct: 480 PGGGAFYGPKI---SVQAKDAIGRTWQLSTIQVD----FQLPQRFDMEYQAA---DGTRQ 529

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +     G +    A++    +      P  +AP ++  I I           + + 
Sbjct: 530 RPFMIHRALFGTIERFFAILL---EHYAGAMPPWLAPVQVVGIPIT---DEHVPYLKDVA 583

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A+L+  G  V  D    ++  +   A     P  +I G+  V+   V  ++R    R  +
Sbjct: 584 AKLTAKGIRVEVDASDNRMQKKIRDAQKQKVPYMLIAGADDVAKDAVSFRYRDGTQRNAV 643

Query: 430 SLEEVINYASHRFSNNRPV 448
            ++E +            V
Sbjct: 644 PVDEAVAEILDAVERRIQV 662


>gi|254466098|ref|ZP_05079509.1| threonyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
 gi|206687006|gb|EDZ47488.1| threonyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
          Length = 648

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 85/445 (19%), Positives = 149/445 (33%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W P G K    +   +R +Q +
Sbjct: 234 KAHLHMLEEAAKRDHRKLGREMDLF--HMQEEAPGQIFWHPNGWKVYTTLQDYMRRQQEK 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G +E++ P +    LW  SG ++ Y + M  +       R        P +      IF
Sbjct: 292 GGYVEVNTPQVVDRRLWEASGHWEKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVQIF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   DA+ F    +  +    K 
Sbjct: 352 NQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIFCA-EDQIEAETKKF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 I+  LG +   ++    P     S E                   D    +   
Sbjct: 411 IDFLSEIYKDLGFEKFSVKFSDRPEKRSGSDE-----------------VWDKSEAALKA 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +       +     A Y    +     L D++  + +     ++    F    +    
Sbjct: 454 ATEAAGCAYDLNPGEGAFYGPKLEF---VLTDAIGRDWQCGTLQVD----FVLPER---- 502

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ GADG  H    +    +G+      ++   H GK   W         S+     
Sbjct: 503 LDATYIGADGAKHRPVMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIT---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    +++ A L K G     D   E+I  +     +   P+ + VG + V +  V
Sbjct: 559 --SDADAYVQEVVAELKKAGVRAEADIRNEKINYKVREHSVGKVPVILAVGHREVEERTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++       +  SLE V    +  
Sbjct: 617 SVRRLGEKETKVESLENVTKALAAE 641


>gi|268595028|ref|ZP_06129195.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|268599257|ref|ZP_06133424.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|268686874|ref|ZP_06153736.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|268548417|gb|EEZ43835.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|268583388|gb|EEZ48064.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|268627158|gb|EEZ59558.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
          Length = 580

 Score =  233 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 116/235 (49%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 11  MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 70

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 71  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 130

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 131 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 190

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 191 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 244



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPEN--K 275
           F  K + DF               +     +     A      D+ N    D  P+   +
Sbjct: 351 FTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGR 410

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D 
Sbjct: 411 LKLARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDE 470

Query: 336 KGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           KGIIW  ++APF++ ++ +        R+A ++IYA L   G DV  DD  E+ G     
Sbjct: 471 KGIIWTKAMAPFEVVIVPMNYKKSDTVREAADRIYAELLAAGADVLLDDRDERAGVLLND 530

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 531 SELLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIVARVTASLN 579


>gi|254669934|emb|CBA04522.1| Prolyl-tRNA synthetase [Neisseria meningitidis alpha153]
          Length = 570

 Score =  233 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 164/235 (69%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 234



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPEN--K 275
           F  K + DF    +                +     A      D+ +    D  P+   +
Sbjct: 341 FAGKVYADFATEKDGDWVIGANEDGYHYTGFNFGRDAAEPEFVDLRDVVEGDESPDGQGR 400

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D 
Sbjct: 401 LKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDE 460

Query: 336 KGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     
Sbjct: 461 KGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLDDRDERAGVLLND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 521 SELLGIPHRIVIGDRALKEGNVEYAERRDNEAQAIAIGEIVARVTASLN 569


>gi|323495331|ref|ZP_08100409.1| prolyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
 gi|323310402|gb|EGA63588.1| prolyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
          Length = 571

 Score =  233 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 150/237 (63%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D     +   +  RGIEVGHIF  G  YS  M
Sbjct: 366 DDKHYFGINWGRDVELGQIEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGNTYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +    G DGK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +    
Sbjct: 426 NCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGVPHTIVIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +++ +++ +   + +
Sbjct: 546 YKNRRSGEKTAVAMADIVEHVKAQLA 571


>gi|262382112|ref|ZP_06075250.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|298375301|ref|ZP_06985258.1| threonine--tRNA ligase [Bacteroides sp. 3_1_19]
 gi|262297289|gb|EEY85219.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|298267801|gb|EFI09457.1| threonine--tRNA ligase [Bacteroides sp. 3_1_19]
          Length = 651

 Score =  233 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 140/446 (31%), Gaps = 40/446 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLTLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRLRLQEFLRRIQARY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++  
Sbjct: 289 NYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +  +  +  +    
Sbjct: 349 RSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKQE-FLNVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D    + +   D           +  +
Sbjct: 408 SIVFKTMNFENFEAQISLR--------------DKVNREKYIGSDENWEKAEQAIVEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLKAKIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQL 502

Query: 301 TFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            + GAD + H   M          R VA +IE +     +                    
Sbjct: 503 EYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLWLTPEQVCIMPI-------S 555

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D   +I   L         DD  E+IG +    +L   P  +IVG K   + +V +
Sbjct: 556 EKFNDYAWQIARELGNQEIRAIVDDRNEKIGRKIRDNELKRIPYMLIVGEKEAENGEVSV 615

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           + +  G +  M +       +     
Sbjct: 616 RKQGEGDKGSMKIATFAALLNGEVEE 641


>gi|218282135|ref|ZP_03488434.1| hypothetical protein EUBIFOR_01014 [Eubacterium biforme DSM 3989]
 gi|218216861|gb|EEC90399.1| hypothetical protein EUBIFOR_01014 [Eubacterium biforme DSM 3989]
          Length = 587

 Score =  233 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 147/438 (33%), Gaps = 39/438 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD +    ++ L T  I + + G+  +LP G    + +     +E  + G   +
Sbjct: 182 LEEAKKRDHKKLGKEMGLFT--ISEFAPGMPIFLPDGMILRNILEQYWYQEHTKEGYQFI 239

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + S +LW  SG +D Y   M      +D+     P +      ++ S + SY++LP
Sbjct: 240 KTPIMMSKELWELSGHWDHYKDNMYTSM-VDDREFAIKPMNCPGALLVYNSTLHSYKDLP 298

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++    R E      G+ R R F   DA+   +TP+  +    K+     RI+   
Sbjct: 299 LRLGELGQVHRHEASGALNGLFRVRTFTQDDAH-LFVTPDQLEEEVKKVLQLVDRIYSVF 357

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           GL        + P                E+    S++  D    +             +
Sbjct: 358 GLPYEI-ELSTRP----------------ESGYIGSEEIWDVSEKALAQACVHAGKEYKV 400

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    D+H   + DSL    +     +++                 +  ADG 
Sbjct: 401 NPGDGAFYGPKLDIH---IKDSLGRVWQCGTVQLDMNLP--------ERFECKYVDADGT 449

Query: 309 DHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 +     G++     ++     G   +W           + I  H +   +   K
Sbjct: 450 KKTPIMLHRVVYGSVERFIGILIEHFGGHFPLWLA-----PRQFVVIPVHHEKHVEYANK 504

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L+ +G     D   E++G +   A L     Q++VG     ++ V I+        
Sbjct: 505 VCDALTALGMRATVDSRNEKLGYRVREAQLQKVTYQIVVGDGEQENNTVTIRQSGKKDSV 564

Query: 428 DMSLEEVINYASHRFSNN 445
            +SL E +        N 
Sbjct: 565 TLSLNEALAKFKAEVDNK 582


>gi|163740958|ref|ZP_02148351.1| threonyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
 gi|161385949|gb|EDQ10325.1| threonyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
          Length = 648

 Score =  233 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 145/443 (32%), Gaps = 45/443 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W P G K    +   +R  Q+R
Sbjct: 234 KAHLHMLEEAAKRDHRKLGREMNLF--HMQEEAPGQIFWHPNGWKIYTTLQDYMRRMQDR 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-----GPTHEEVMTDIF 118
            G +E++ P +    LW  SG +D Y + M  +    D A         P +      +F
Sbjct: 292 DGYVEVNTPQVVDRKLWEASGHWDKYQENMFIVEVDEDHAREKAVNALKPMNCPCHVQVF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D + F    +    +  K 
Sbjct: 352 NQGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDGHIFCAEDQIESET-AKF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                +++  LG     ++  + P     S E                   D    +   
Sbjct: 411 IAFLSKVYADLGFHDWTIKLSTRPEKRIGSDE-----------------SWDLVEKALGD 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     ++E   A Y    +     L D++  N +     ++              
Sbjct: 454 ACKAAGYEYELLEGEGAFYGPKLEF---TLTDAIGRNWQCGTLQVDPNLP--------ER 502

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A F G DG  H    +    +G+      ++   H GK   W         S+     
Sbjct: 503 LDANFIGQDGSKHRPFMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIT---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++   L   G     D   E+I  +     +   P+ + VG + V +  V
Sbjct: 559 --SDADDYVNEVVETLRAAGVRAEADIRNEKINYKVREHSVGKVPVILAVGHREVEERTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
            ++       +  +LE V    +
Sbjct: 617 SVRRLGEKQTKVEALEAVTKALA 639


>gi|15614982|ref|NP_243285.1| prolyl-tRNA synthetase [Bacillus halodurans C-125]
 gi|81857777|sp|Q9KA71|SYP_BACHD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|10175039|dbj|BAB06138.1| prolyl-tRNA synthetase [Bacillus halodurans C-125]
          Length = 569

 Score =  233 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 115/235 (48%), Positives = 160/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S + +P ++E P DA++ SH+LMLR GMI Q + GIY++LPL ++ +  + +I+REE
Sbjct: 1   MKQSFFLVPTMREVPADADVVSHQLMLRAGMIRQVAAGIYTYLPLARRVIRKIESIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++TGA E+++PTL  A+LW ESGR++ YG E++RL DR+++    GPTHEEV+T + R 
Sbjct: 61  LDQTGAQEITMPTLHPAELWQESGRWEKYGDELMRLTDRHNRQFALGPTHEEVITSLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF    E     Y  M+ +
Sbjct: 121 SINSYKKLPLNVYQIQSKFRDERRPRFGLLRGREFIMKDAYSFHTGGESLDEMYKVMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL   P+ A+SG IGG  +HEF+ LAD GE  +  S    D+    E
Sbjct: 181 YSRIFRRAGLNVRPVIADSGAIGGKDTHEFMALADVGEDTIAYSDQ-SDYAANIE 234



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 105/206 (50%), Gaps = 3/206 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLP 297
           +       + E+        +D+   +  D  P+ K      +GIEVG +F  GT YS  
Sbjct: 361 ESNKHFIHVNEERDFTVDTYADLRFIQEGDPSPDGKGTIRFAQGIEVGQVFKLGTVYSEK 420

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           + ATF   +GK   + MG YGIG  R+VAAVIE  HD  GI+WP SVAPF + ++ +   
Sbjct: 421 LGATFLDENGKSQPMLMGCYGIGVSRMVAAVIEQHHDEDGIVWPTSVAPFDVHVLALNVK 480

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +      + +Y  L + G DV  DD  E+ G +F  ADL+G PL+V VG +   +  VE
Sbjct: 481 KEEQMKLADSVYHSLQQAGLDVLLDDRPERAGVKFKDADLIGLPLRVAVGKR-ADEGYVE 539

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           +K R TG   ++  +E++     +  
Sbjct: 540 VKVRKTGEVIEVHADELVPTIQAKLQ 565


>gi|228909643|ref|ZP_04073466.1| Prolyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|228849932|gb|EEM94763.1| Prolyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
          Length = 566

 Score =  233 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 123/267 (46%), Positives = 165/267 (61%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDCLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E      A       E++
Sbjct: 240 ATYTKSDEAEMALEKVATPDQKAIEEV 266



 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/190 (39%), Positives = 108/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +     V R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDVQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EKGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|27365189|ref|NP_760717.1| prolyl-tRNA synthetase [Vibrio vulnificus CMCP6]
 gi|81844691|sp|Q8DBH9|SYP_VIBVU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|27361336|gb|AAO10244.1| prolyl-tRNA synthetase [Vibrio vulnificus CMCP6]
          Length = 571

 Score =  233 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 113/237 (47%), Positives = 152/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPINLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG+ S EF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGNGSQEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/190 (32%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              +D+ N    D     +   +  RGIEVGHIF  G  YS  M+     ++GK+  ++M
Sbjct: 382 GQVADLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGNVYSEAMNCGVLDSNGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE ++D  GIIWPD++APF+++++ +     +  ++A EK+YA L+
Sbjct: 442 GCYGIGVSRVVAAAIEQNNDKYGIIWPDALAPFQVAIVPMNMHKSERVQEAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E K+R +G +  +++ +
Sbjct: 502 AMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMDEGHFEYKNRRSGEKTPVAMAD 561

Query: 434 VINYASHRFS 443
           ++ +   +  
Sbjct: 562 IVEHIKAQLK 571


>gi|42782910|ref|NP_980157.1| prolyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|217961239|ref|YP_002339807.1| prolyl-tRNA synthetase [Bacillus cereus AH187]
 gi|229140460|ref|ZP_04269015.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|81409464|sp|Q732Q0|SYP1_BACC1 RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|226731429|sp|B7HLF2|SYP_BACC7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|42738837|gb|AAS42765.1| prolyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|217063356|gb|ACJ77606.1| prolyl-tRNA synthetase [Bacillus cereus AH187]
 gi|228643021|gb|EEK99297.1| Prolyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|324327716|gb|ADY22976.1| prolyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 566

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|37680756|ref|NP_935365.1| prolyl-tRNA synthetase [Vibrio vulnificus YJ016]
 gi|81859846|sp|Q7MIE5|SYP_VIBVY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|37199505|dbj|BAC95336.1| prolyl-tRNA synthetase [Vibrio vulnificus YJ016]
          Length = 571

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 113/237 (47%), Positives = 152/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPINLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG+ S EF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGNGSQEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/190 (33%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              +D+ N    D     +   +  RGIEVGHIF  G  YS  M+     ++GK+  ++M
Sbjct: 382 GQVADLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGNVYSEAMNCGVLDSNGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE ++D  GIIWPD++APF+++++ +     +  ++A EK+YA L+
Sbjct: 442 GCYGIGVSRVVAAAIEQNNDKYGIIWPDALAPFQVAIVPMNMHKSERVQEAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E K+R +G +  +++ +
Sbjct: 502 AMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMDEGHFEYKNRRSGEKTPVAMAD 561

Query: 434 VINYASHRFS 443
           ++ Y   +  
Sbjct: 562 IVEYIKAQLE 571


>gi|197103889|ref|YP_002129266.1| threonyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
 gi|238690165|sp|B4RE95|SYT_PHEZH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|196477309|gb|ACG76837.1| threonyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
          Length = 658

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 78/426 (18%), Positives = 133/426 (31%), Gaps = 40/426 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + ++  L+E   RD      ++ L    + +  KG+  W   G      V + +R   + 
Sbjct: 230 EAYIQRLEEAEKRDHRKLGRQMDLF--HMQEEGKGMVFWHEKGLTLWRTVESYVRRRLDE 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +     W +SG +D Y   M        + +   P +      IF+   K
Sbjct: 288 AGYQEVRTPQVLDRVFWEKSGHWDKYRPNMFVCETEEGEELSLKPMNCPGHVQIFKFGQK 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R E      G+MR R F   DA+ F    +  +    +      
Sbjct: 348 SYRDLPLRMAEFGACHRYEPSGALHGLMRVRAFTQDDAHIFCR-EDQIEEETARFIELAN 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I    GL+   +   + P     S EF                  D             
Sbjct: 407 SIHADFGLERDHIALATRPEVRAGSDEF-----------------WDKAEAQMLAAARKA 449

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A YA   D     L DS+          ++       G        A +
Sbjct: 450 GVEPVIAEGDGAFYAPKLDW---VLKDSIGRTWTCGTIQLDYVLPERLG--------AEY 498

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG       +     G++     V+  ++ G   +W   V     ++ +        
Sbjct: 499 VAEDGSKQRPVMLHRAICGSLERFIGVLIENYAGAFPLWLAPVQVVVATITSDADDYARA 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             A       L   G  V  D   E+I  +     L   P+  +VG +   + KV ++  
Sbjct: 559 AAA------ELKAKGLRVELDLRNEKINYKVREHSLAKVPVIAVVGRREAEEGKVALRRL 612

Query: 422 LTGIRE 427
            +  ++
Sbjct: 613 GSDGQQ 618


>gi|190891876|ref|YP_001978418.1| threonyl-tRNA synthetase [Rhizobium etli CIAT 652]
 gi|238692487|sp|B3PNV4|SYT_RHIE6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190697155|gb|ACE91240.1| threonyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
          Length = 668

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 144/447 (32%), Gaps = 46/447 (10%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      ++ L      +   G+  W   G +    + A +R       
Sbjct: 234 YLHMLAEAEKRDHRKLGREMDLF--HFQEEGPGVVFWHGKGWRIFQTLVAYMRRRL-AAD 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEML-----------RLADRNDKAMIYGPTHEEVM 114
             E++ P +    LW  SG +  Y + M               + +++     P +    
Sbjct: 291 YQEVNAPQVLDTSLWETSGHWGWYQENMFAVKSAHAMTHPEDKEADNRVFALKPMNCPGH 350

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHS 173
             IF+  +KSYR LP    +  L  R E      G+MR R F   DA+ F    + +   
Sbjct: 351 VQIFKHGLKSYRELPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAEC 410

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                   L ++   G K I ++  + P     S      A+   T V          I 
Sbjct: 411 LKIN-DLILSVYEDFGFKEIVVKLSTRPEKRVGSDALWDRAEAVMTDVL-------KTIE 462

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           +++        L        A Y    +     L D++    +     ++      FG  
Sbjct: 463 AQSEGRIKTGIL----PGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG-- 513

Query: 294 YSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
                 A +  ++ +      +     G+M     ++  +  G   +W   +     ++ 
Sbjct: 514 ------AFYIDSNSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLWVSPLQVVVATIT 567

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                         ++   L   G +V  D   E+I  +     +   P+ ++ G K   
Sbjct: 568 ------SEADAYGLEVAEALRDAGLNVETDFRNEKINYKIREHSVTKVPVIIVCGRKEAE 621

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYAS 439
           +  V I+   +  +  M L+  +   +
Sbjct: 622 ERTVNIRRLGSQDQVSMGLDAAVESLT 648


>gi|153836755|ref|ZP_01989422.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|260900371|ref|ZP_05908766.1| proline--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|149749901|gb|EDM60646.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|308108556|gb|EFO46096.1| proline--tRNA ligase [Vibrio parahaemolyticus AQ4037]
          Length = 571

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 112/237 (47%), Positives = 150/237 (63%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG  S EF VLAD+GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLADSGEDLIAF-STESDYAANIEKA 236



 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 110/190 (57%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  G  YS  M+ +  G DGK+  ++M
Sbjct: 382 GQVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGNVYSEAMNCSVLGPDGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +     +  ++  EK+YA L+
Sbjct: 442 GCYGIGVSRVVASAIEQNHDKYGIIWPDAIAPFQVAIVPMNMHKSERVKEEAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E K+R TG +  +++ +
Sbjct: 502 AMGIEVLFDDRKERPGVMFSDIELIGIPHTIVIGDRSMDEGNFEYKNRRTGEKTPVAMAD 561

Query: 434 VINYASHRFS 443
           ++ +   +  
Sbjct: 562 IVEHVKSQLK 571


>gi|226223920|ref|YP_002758027.1| prolyl-tRNA synthetase [Listeria monocytogenes Clip81459]
 gi|259511604|sp|C1L2M5|SYP_LISMC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225876382|emb|CAS05091.1| prolyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
          Length = 568

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 124/294 (42%), Positives = 167/294 (56%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S    D+   +E     
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSD-ASDYAANTEMAPVL 239

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                   L   +E+   P   +     E L   + +  +     ++   I   
Sbjct: 240 YMEKKSHELEKDMEKVATPDQKSIADIVEFLEVPIEKTMKSMLYQVDDEVIMVL 293



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 101/180 (56%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 383 DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G +W   ++PF + LI +    +      E +Y+ L   G  
Sbjct: 443 IGVSRILSAIAEQSNDENGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYSSLQDAGFS 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N  
Sbjct: 503 VLIDDRAERAGVKFADADLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTL 561


>gi|47569097|ref|ZP_00239786.1| prolyl-tRNA synthetase [Bacillus cereus G9241]
 gi|47554259|gb|EAL12621.1| prolyl-tRNA synthetase [Bacillus cereus G9241]
          Length = 566

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 123/267 (46%), Positives = 168/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GLK   + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLKFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDESGLVWPKAVAPFHVHVIPVNMKSDAQREMGESIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|312984108|ref|ZP_07791455.1| threonine--tRNA ligase [Lactobacillus crispatus CTV-05]
 gi|310894462|gb|EFQ43537.1| threonine--tRNA ligase [Lactobacillus crispatus CTV-05]
          Length = 644

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 154/433 (35%), Gaps = 34/433 (7%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      V   I + +   G   +  P L
Sbjct: 239 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVL 296

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y  +M    D  D  M    P +      I++ HI+SYR+LP    
Sbjct: 297 MNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSYRDLPLRVA 356

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++    +  
Sbjct: 357 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQTE-FAKILKLIMDVYKDFDITD 415

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 416 YYFRLS-------------YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGE 462

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G DG++H  
Sbjct: 463 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLTYVGQDGEEHRP 511

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            M     G +  +   I    +     +P  +AP +  +I +   +    +  EK+   L
Sbjct: 512 VMIHR--GIVGTMERFIAYLTEIYKGAFPTWLAPIQAEIIPVN--NDAHGEYAEKVRQEL 567

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +K G  V  D+  E++G +   +     P  +++G + + +  V ++   T      SL 
Sbjct: 568 AKRGFRVEVDNRNEKMGYKIRESQTQKVPYTLVLGDEEMKNGSVNVRRYGTDEEISKSLT 627

Query: 433 EVINYASHRFSNN 445
           + IN       + 
Sbjct: 628 DFINEIDADVKSY 640


>gi|268596592|ref|ZP_06130759.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|268601604|ref|ZP_06135771.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|268550380|gb|EEZ45399.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|268585735|gb|EEZ50411.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
          Length = 580

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 116/235 (49%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 11  MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 70

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 71  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 130

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 131 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 190

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 191 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 244



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPEN--K 275
           F  K + DF               +     +     A      D+ N    D  P+   +
Sbjct: 351 FTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGR 410

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D 
Sbjct: 411 LKLARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDE 470

Query: 336 KGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           KGIIW  ++APF++ ++ +        R+A ++IYA L   G DV  DD  E+ G     
Sbjct: 471 KGIIWTKAMAPFEVVIVPMNYKKSDTVREAADRIYAELLAAGADVLLDDRDERAGVLLND 530

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 531 SELLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIVARVTASLN 579


>gi|75908528|ref|YP_322824.1| prolyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
 gi|114152169|sp|Q3MAQ7|SYP_ANAVT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|75702253|gb|ABA21929.1| Prolyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
          Length = 604

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 114/240 (47%), Positives = 152/240 (63%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLRDDPADAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P LQ ++LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNAAGAQECLLPQLQPSELWKESGRWDTYTKAEGIMFSLIDRREQQLGLGPTHEEVITAI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKD YSF +  +  K +Y  M
Sbjct: 121 ARDMIRSYRQLPLHLYQLQTKFRDEIRPRFGLMRGREFIMKDGYSFHVDEDSLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           + +Y  +  R GL   P+ A+SG IGG  S EF+VLA+ GE +V  + D   +    E  
Sbjct: 181 YQAYSNMLRRAGLAFRPVEADSGAIGGSGSTEFMVLAEAGEDEVLYTDDG-KYAANVEKA 239



 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 96/168 (57%), Gaps = 1/168 (0%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             SARGIEVGHIF  GTKYS  + AT+    G++  + MG YG+G  R+  + +E S+D 
Sbjct: 431 LKSARGIEVGHIFQLGTKYSQALGATYTNEQGEEKPLVMGCYGVGVSRLAQSAVEQSYDK 490

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GIIWP ++AP+   +     +D    +  E++Y  L++ G +   DD  E+ G +F  A
Sbjct: 491 DGIIWPVAIAPYHAIVTIPNINDAQQVEIAERLYTELNQSGVETLLDDRNERAGVKFKDA 550

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           DL+G P +++ G + +++ KVEI  R T   +++ ++EVI        
Sbjct: 551 DLIGIPYRIVTG-RAITNGKVEIVERATRQSQEIPIDEVITTLQQWIK 597


>gi|84687895|ref|ZP_01015762.1| threonyl-tRNA synthetase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664089|gb|EAQ10586.1| threonyl-tRNA synthetase [Rhodobacterales bacterium HTCC2654]
          Length = 649

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 146/446 (32%), Gaps = 44/446 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             K+   + +   RD      ++ L    + + + G   W P G      +   +R +Q 
Sbjct: 234 LKKHLTFLEEAEKRDHRRLGREMDLF--HMQEEAPGQVFWHPNGWTIYTVLQDYMRRQQQ 291

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDI 117
           R G +E++ P +    LW  SG ++ Y + M  +       R        P +      I
Sbjct: 292 RGGYVEVNTPQVVDRKLWEASGHWEKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVQI 351

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F   +KSYR+LP    +     R E      G+MR R F   DA+ F  T +  +    +
Sbjct: 352 FNVGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIFC-TEDQIESETER 410

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                  I+  LG  +  ++    P     S E                   D    +  
Sbjct: 411 FISFLAGIYKDLGFPTYKIKFSDRPDTRAGSDE-----------------IWDKAEKALL 453

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                + +   +     A Y    +     L D++  + +     ++    F    +   
Sbjct: 454 DATHKVTNDVELNPGEGAFYGPKLEF---VLTDAIGRDWQCGTLQVD----FVLPER--- 503

Query: 297 PMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            + A + G DG  H    +    +G+      ++   H GK   W           + + 
Sbjct: 504 -LDANYIGEDGAKHRPVMLHRATLGSFERFIGILIEEHAGKLPFW------IAPRQVVVA 556

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           +      D   ++   L   G     D   E+I  +         P+ + +G K V D  
Sbjct: 557 SIVSDADDYVREVVDALRAKGVRAEADTRNEKINYKVREHSAGKVPVILAIGMKEVEDRT 616

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V ++         ++L+EV+   S  
Sbjct: 617 VTLRRLGEKQTRVVALDEVVQELSTE 642


>gi|295425303|ref|ZP_06818006.1| threonine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
 gi|295065079|gb|EFG55984.1| threonine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
          Length = 659

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 155/440 (35%), Gaps = 34/440 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD       L L    +  +   G+  W+P G      V   I + +   G  
Sbjct: 247 RRQEIKERDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYQ 304

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + D +  SG +  Y  +M    D  D  M    P +      IF+ HI+SYR
Sbjct: 305 HVYTPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIFKHHIRSYR 364

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++
Sbjct: 365 DLPLRVAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQDE-FAKILKLIMDVY 423

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +     R                       + F + +  +          DD+   
Sbjct: 424 KDFDITDYYFRLS-------------YRDPKNTQKYFANDEMWERSQKMLKGAMDDLGLD 470

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G 
Sbjct: 471 YVEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPDRF----GLTYVGK 519

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DG++H   M     G +  +   I    +     +P  +AP +  +I +   +    +  
Sbjct: 520 DGEEHRPVMIHR--GIVGTMERFIAYLTEIYKGAFPTWLAPIQAEIIPVN--NDAHGEYA 575

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           EK+   L+K G     D+  E++G +   +     P  +++G + +  + V ++   T  
Sbjct: 576 EKVRQELAKRGFRAEVDNRNEKLGYKIRESQTQKVPYTLVLGDEEMKSNSVNVRRYGTDE 635

Query: 426 REDMSLEEVINYASHRFSNN 445
               SL++ IN       + 
Sbjct: 636 EISKSLDDFINEIDADVKSY 655


>gi|294668560|ref|ZP_06733657.1| proline--tRNA ligase [Neisseria elongata subsp. glycolytica ATCC
           29315]
 gi|291309523|gb|EFE50766.1| proline--tRNA ligase [Neisseria elongata subsp. glycolytica ATCC
           29315]
          Length = 569

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 122/273 (44%), Positives = 173/273 (63%), Gaps = 5/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RL L+  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E     
Sbjct: 181 YCRIFTRLDLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIELAPTL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            +    +  +   A         N K  DSL +
Sbjct: 240 PLKGERATAQAELA----KVHTPNVKTIDSLVD 268



 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 105/229 (45%), Gaps = 7/229 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPEN--K 275
           F  K + DF               +     +     A      D+ N    D  P+   +
Sbjct: 341 FTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGR 400

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               RGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D 
Sbjct: 401 LKLTRGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDE 460

Query: 336 KGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           KGIIW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     
Sbjct: 461 KGIIWTKAMAPFEVVIVPMNYKKSDAVREAADKIYAELLAAGADVLLDDRDERAGVLLND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++LLG P ++++G + + +  VE   R     + +   E+         
Sbjct: 521 SELLGIPHRIVIGDRALKEGNVEYAERRNNEAQTVPTGEIAAKVLAALK 569


>gi|269960577|ref|ZP_06174949.1| prolyl-tRNA synthetase [Vibrio harveyi 1DA3]
 gi|269834654|gb|EEZ88741.1| prolyl-tRNA synthetase [Vibrio harveyi 1DA3]
          Length = 571

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 112/237 (47%), Positives = 151/237 (63%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 110/190 (57%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  G  YS  M+    G DGK+  ++M
Sbjct: 382 GQVEDLRNVVEGDPSPCGQGTLMLKRGIEVGHIFQLGNVYSEAMNCGVLGPDGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +     +  ++A EK+YA L+
Sbjct: 442 GCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHKSEEVKEAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E K+R +G +  +++ +
Sbjct: 502 AMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMKEGNFEYKNRRSGEKTAVAMAD 561

Query: 434 VINYASHRFS 443
           ++ +   +  
Sbjct: 562 IVEHVKAQLQ 571


>gi|229168558|ref|ZP_04296281.1| Prolyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228614964|gb|EEK72066.1| Prolyl-tRNA synthetase [Bacillus cereus AH621]
          Length = 566

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 121/267 (45%), Positives = 166/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+++LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQASELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +    +  D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAY-SNTSDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 75/190 (39%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP SVAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKSVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|320155572|ref|YP_004187951.1| prolyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
 gi|319930884|gb|ADV85748.1| prolyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
          Length = 571

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 113/237 (47%), Positives = 152/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M  +
Sbjct: 121 EVSSYKQLPINLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG+ S EF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGNGSQEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/190 (32%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              +D+ N    D     +   +  RGIEVGHIF  G  YS  M+     ++GK+  ++M
Sbjct: 382 GQVADLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGNVYSEAMNCGVLDSNGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE ++D  GIIWPD++APF+++++ +     +  ++A EK+YA L+
Sbjct: 442 GCYGIGVSRVVAAAIEQNNDKYGIIWPDALAPFQVAIVPMNMHKSERVQEAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E K+R +G +  +++ +
Sbjct: 502 AMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMDEGHFEYKNRRSGEKTPVAMAD 561

Query: 434 VINYASHRFS 443
           ++ +   +  
Sbjct: 562 IVEHIKAQLK 571


>gi|224058287|ref|XP_002194154.1| PREDICTED: prolyl-tRNA synthetase 2, mitochondrial (putative)
           [Taeniopygia guttata]
          Length = 470

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 152/459 (33%), Positives = 226/459 (49%), Gaps = 47/459 (10%)

Query: 2   RRSKYFLPI---------LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDN 52
           R S+ F P+          +  P +    S +LML+ G+IH  S G Y +LP   +A++ 
Sbjct: 35  RLSQLFQPLALPVGGQVSSEARPGEPTCRSQRLMLQAGLIHPTSPGCYCYLPPTVRAMEK 94

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEE 112
           +  ++ EE    G  ++++P+L SA+LW  SGR+D  G E+ RL DR+D     GPTHEE
Sbjct: 95  LIQLMDEEMQAVGGQKLNLPSLCSAELWRASGRWDQMGPELFRLVDRHDHGYCLGPTHEE 154

Query: 113 VMT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           V+T  +      SY+ LP   YQ+  KFRDE +PRFG++RSREF MKD Y+FD + E ++
Sbjct: 155 VVTALVASQTGLSYKQLPLRLYQVTRKFRDEPKPRFGLLRSREFYMKDMYTFDSSEEAAR 214

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            +Y ++  +Y  +F RLGL  + ++A +G IGG  SHEF + AD GE ++          
Sbjct: 215 RTYEQVCAAYCSLFARLGLPFVKVQAATGSIGGSTSHEFQLPADIGEDRLLLCPQ----- 269

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                                    A    ++ E+        K    +GIEVGH FY G
Sbjct: 270 ---------------------GHFAAKVETLNREQPRAPTCGEKLTETKGIEVGHTFYLG 308

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           TKYS   +A F  A+ K    +MG YG+G  R++AA IE       I WP  +AP+++  
Sbjct: 309 TKYSSVANAVFSSAENKPQLAEMGCYGLGVTRILAASIEVLSTEDSIRWPSLIAPYQLCF 368

Query: 352 INIKAHDQ---VCRDACEKIYARLSK-----VGCDVFWDDMGE-QIGSQFAVADLLGFPL 402
           I  K   +         E++Y  L +      G D   DD  +  IG +   A  LG+P 
Sbjct: 369 IPPKRGSKEEEEGAALLERVYDELEEALPHLAG-DSVLDDRSQLTIGKRLKDAKRLGYPY 427

Query: 403 QVIVGSKFVSDSKV-EIKHRLTGIREDMSLEEVINYASH 440
            V+ G +   D  V E+ ++       ++ E VI   S 
Sbjct: 428 VVVAGKRVCEDPPVFEVWNQNASEVLFLTKEGVIELLSK 466


>gi|260495035|ref|ZP_05815164.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
 gi|260197478|gb|EEW94996.1| prolyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
          Length = 567

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 120/251 (47%), Positives = 164/251 (65%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 1   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 61  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERGFVLSPTQEEMITAIVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y IQ KFRDE RPRFG+MR REF MKDAYSF  + E     +  M  +
Sbjct: 121 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGREFTMKDAYSFHTSQESLDKEFLNMRDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK  P+ A+SG IGG  S EF VLA++GE ++  S    ++    E    +
Sbjct: 181 YTRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAESGEDEIIYSD-GSEYAANIETAVSE 239

Query: 241 DIISLNSIVEQ 251
            I      +++
Sbjct: 240 LINPPKEELKE 250



 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/186 (40%), Positives = 106/186 (56%), Gaps = 2/186 (1%)

Query: 259 TSDVHNEKLFDSLP-ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +D+   K+ ++     K  SARGIE G IF  G KYS  M+AT+    G+ HY+ MG Y
Sbjct: 381 VADIRKVKVGENCITGGKLHSARGIECGQIFKLGDKYSKAMNATYLDEKGQSHYMLMGCY 440

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R +AA IE  +D  GIIWP S+AP+ + +I +   ++   +  EKIY  L +   
Sbjct: 441 GIGVTRTMAAAIEQYNDENGIIWPVSIAPYIVDVIPVNIKNEAQVNLAEKIYNNLQEEKI 500

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD  E+ G +F  ADL+GFP +V+VG K   + +VE+K R TG   ++S  E+IN 
Sbjct: 501 DVMLDDRDEKPGFKFKDADLIGFPFKVVVGKK-AEEGRVELKIRKTGETFEISQNEIINK 559

Query: 438 ASHRFS 443
                 
Sbjct: 560 IKELMK 565


>gi|163941557|ref|YP_001646441.1| prolyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|226731430|sp|A9VT57|SYP_BACWK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|163863754|gb|ABY44813.1| prolyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
          Length = 566

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 166/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+++LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQASELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/190 (39%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP SVAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKSVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|222097264|ref|YP_002531321.1| prolyl-tRNA synthetase [Bacillus cereus Q1]
 gi|254782885|sp|B9IVA8|SYP_BACCQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|221241322|gb|ACM14032.1| prolyl-tRNA synthetase [Bacillus cereus Q1]
          Length = 566

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 122/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|307294661|ref|ZP_07574503.1| threonyl-tRNA synthetase [Sphingobium chlorophenolicum L-1]
 gi|306879135|gb|EFN10353.1| threonyl-tRNA synthetase [Sphingobium chlorophenolicum L-1]
          Length = 660

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 148/450 (32%), Gaps = 48/450 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      ++ L    + Q + G   W P G      + A +R   +  G 
Sbjct: 237 LTRLEEAGKRDHRKLGAEMDLF--HLQQEAHGSVFWHPKGYLIWRELEAYMRRAIDEAGY 294

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-------------AMIYGPTHEEV 113
            E+  P +  A  W +SG +  Y + M  + D                  M   P +   
Sbjct: 295 REVKTPQVMDARQWEQSGHWGKYRENMFVIPDEVPNVEDEGPLVSEAADWMALKPMNCPA 354

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF+  IKSYR+LP  FY+     R+E      G+MR R+F   DA+ F    +  + 
Sbjct: 355 HILIFKQGIKSYRDLPLRFYENGCCHRNEPHGALHGLMRVRQFTQDDAHIFCREDQIVEE 414

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                     RI+   G      +    P     + E    A+                 
Sbjct: 415 -VRAFCALADRIYKDFGFTYSI-KLALRPEKRFGTEEMWDKAEEELRNAV--------AA 464

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
              NT           +    A YA   + H   L D++    +V     +         
Sbjct: 465 AGLNTPEYG----WEELPGEGAFYAPKLEWH---LTDAIGRTWQVGTIQSDRVLP----- 512

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                + A++ G DG+ H    +     G+      ++   + GK  +W   V     ++
Sbjct: 513 ---ERLDASYVGEDGERHRPVMLHRAIFGSYERFIGILIEHYAGKFPLWLAPVQAVVATI 569

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +          D  + +  +L  VG     D   E+I  +     L   P  ++VG +  
Sbjct: 570 V------SDADDYAQTVAEKLRAVGIRAETDVRNEKINYKVREHSLAKVPNLLVVGRREA 623

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +  V ++      +  +S+E+VI   +  
Sbjct: 624 DEGTVALRELGKEGQTILSVEDVIARLAKE 653


>gi|163737374|ref|ZP_02144791.1| threonyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
 gi|161388900|gb|EDQ13252.1| threonyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
          Length = 648

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 145/443 (32%), Gaps = 45/443 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W P G K    +   +R  Q+R
Sbjct: 234 KAHLHMLEEAAKRDHRKLGREMNLF--HMQEEAPGQIFWHPNGWKIYTTLQDYMRRMQDR 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-----GPTHEEVMTDIF 118
            G +E++ P +    LW  SG +D Y + M  +    D A         P +      +F
Sbjct: 292 DGYVEVNTPQVVDRKLWEASGHWDKYQENMFIVEVDEDHAREKAVNALKPMNCPCHVQVF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D + F    +    +  K 
Sbjct: 352 NQGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDGHIFCAEDQIESET-AKF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                +++  LG     ++  + P     S E                   D    +   
Sbjct: 411 IAFLSKVYADLGFHDWTIKLSTRPEKRIGSDE-----------------SWDLVEKALGD 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     ++E   A Y    +     L D++  N +     ++              
Sbjct: 454 ACKAAGYEYELLEGEGAFYGPKLEF---TLTDAIGRNWQCGTLQVDPNLP--------ER 502

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A F G DG  H    +    +G+      ++   H GK   W         S+     
Sbjct: 503 LDANFIGQDGSKHRPFMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIT---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++   L   G     D   E+I  +     +   P+ + VG + V +  V
Sbjct: 559 --SDADDYVNEVVETLRAAGVRAEADIRNEKINYKVREHSVGKVPVILAVGHREVEERTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
            ++       +  +L+ V    +
Sbjct: 617 SVRRLGEKQTKVEALDAVTKALA 639


>gi|301310685|ref|ZP_07216624.1| threonine--tRNA ligase [Bacteroides sp. 20_3]
 gi|300832259|gb|EFK62890.1| threonine--tRNA ligase [Bacteroides sp. 20_3]
          Length = 649

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 140/446 (31%), Gaps = 40/446 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLTLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRLRLQEFLRRIQARY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++  
Sbjct: 289 NYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +  +  +  +    
Sbjct: 349 RSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKQE-FLNVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D    + +   D           +  +
Sbjct: 408 SIVFKTMNFENFEAQISLR--------------DKVNREKYIGSDENWEKAEQAIVEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLKAKIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQL 502

Query: 301 TFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            + GAD + H   M          R VA +IE +     +                    
Sbjct: 503 EYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLWLTPEQVCIMPI-------S 555

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D   +I   L         DD  E+IG +    +L   P  +IVG K   + +V +
Sbjct: 556 EKFNDYAWQIARELGNQEIRAIVDDRNEKIGRKIRDNELKRIPYMLIVGEKEAENGEVSV 615

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           + +  G +  M +       +     
Sbjct: 616 RKQGEGDKGSMKIATFAALLNGEVEE 641


>gi|68536224|ref|YP_250929.1| prolyl-tRNA synthetase [Corynebacterium jeikeium K411]
 gi|260578924|ref|ZP_05846827.1| proline--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
 gi|114152185|sp|Q4JV46|SYP_CORJK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|68263823|emb|CAI37311.1| proS [Corynebacterium jeikeium K411]
 gi|258602898|gb|EEW16172.1| proline--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 596

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 119/384 (30%), Positives = 174/384 (45%), Gaps = 14/384 (3%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I + + G+YSWLPLG + L N+ A++REE 
Sbjct: 4   RMSQLFLRTLRDDPADAEVPSHKLLVRAGYIRRVAPGVYSWLPLGLRVLRNIEAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+S P L   + +  +GR+  YG  + RL DR +   + GPTHEE+ T + +S 
Sbjct: 64  NAIGAQEISFPALLPREPYDTTGRWVEYGDALFRLKDRKNADYLLGPTHEEMFTSVVKSE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQ+Q K+RDE RPR G++R REF+MKD+YSF++  EG + SY     +Y
Sbjct: 124 YNSYKDFPVILYQVQTKYRDEERPRAGILRGREFIMKDSYSFNMDDEGLEESYQLHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             IF RLG+K     A SG +GG  S EF+ +A  GE   F      D+    E      
Sbjct: 184 QNIFDRLGIKYAICSATSGAMGGSASEEFLAVAANGE-DTFVRSTESDYAANVEAVVTQV 242

Query: 242 IISLNSIVEQWTAPY-AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +     +     Y    S+     +  +  E   +  R +E                 
Sbjct: 243 PPAQPIEGQPEAKEYETPDSETIEALVEWANSEGITIDGRAVEAADT--LKCIVIKVNDP 300

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T             G    G   V    +E+S +   +   D     K   +        
Sbjct: 301 TLDEEGKPRGESLAGVLVPGNREVDMKRLEASMEPAQVELADEADFKKNPFLVKGYVGP- 359

Query: 361 CRDACEKIYARLSKVGCDVFWDDM 384
                      L+  G  V  D  
Sbjct: 360 ---------KGLAANGVRVLADPR 374



 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/194 (33%), Positives = 93/194 (47%), Gaps = 6/194 (3%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +       D  P+ K     ARGIE+GHIF  G KY+           GK     MG
Sbjct: 405 GFVEAAEVLEGDPSPDGKGTLALARGIEIGHIFQLGRKYTEAFDVKILDESGKRSVPTMG 464

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R+V  + E   D  G+ WP SVAPF +  + I   D    +A  ++   LS  
Sbjct: 465 SYGVGVSRLVGVIAEQMLDDSGLRWPASVAPFDVH-VVIANKDAAAGEAAVELVETLSND 523

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD      G +F  ++LLG PL V+VG +  +D KVE+++RLTG   ++   + 
Sbjct: 524 GLEVLFDDRPKVSPGVKFKDSELLGMPLVVVVG-RGFADGKVELRNRLTGETYEVDYTDA 582

Query: 435 INYASHRFS-NNRP 447
           +  A        RP
Sbjct: 583 LPEAKRALRGEARP 596


>gi|15673893|ref|NP_268068.1| theronyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|281492524|ref|YP_003354504.1| threonyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|22654138|sp|Q9CED2|SYT_LACLA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|12724948|gb|AAK06009.1|AE006421_2 theronyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|281376188|gb|ADA65679.1| Threonyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|326407464|gb|ADZ64535.1| threonyl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56]
          Length = 646

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 167/441 (37%), Gaps = 35/441 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L + +E   RD      +L L      +   G   WLP G      +   + +++ + G 
Sbjct: 232 LKLREEAKERDHRKLGRELDLF-FNDAELGAGTAYWLPAGATIRRIIERFVVDQEVKNGY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSY 125
             +  P + + + + +SG +  Y ++M    D  D + M   P +      I++ H+ SY
Sbjct: 291 QHVITPVMMNLNTYKQSGHWQHYHEDMYPPMDMGDGEEMELRPMNCPSHIAIYKHHVHSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +  +  R E      G+ R RE  + D ++F +  +  +  ++K+    + +
Sbjct: 351 RELPIRIAEFGMMHRYEKSGALSGLQRVREMTLNDGHTFVMLEQVQEE-FSKILQLIMDM 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDII 243
           +   G+     R                  D  +T  +   D M     +      DD+ 
Sbjct: 410 YRDFGINDYSFRLS--------------YRDPKDTVKYFPDDEMWEKSQAMLKATMDDMN 455

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    D+   ++  +L   + +S   ++  +              ++ 
Sbjct: 456 LDYVEAEGEAAFYGPKLDI---QVKTALGNEETLSTIQLDFLNP--------ENFDISYI 504

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           GADG+ H   M     G +  +   I    +     +P  +AP + ++I +   +++  D
Sbjct: 505 GADGEKHRPVMIHR--GVISTLERFIAYLIEVYKGAFPTWLAPTQATIIPVN--NEIHAD 560

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              KI   L   G  V  D+  E++G +   +     P Q+++G +  +D  V I+   +
Sbjct: 561 YAWKIQRELQDKGFRVVVDEANEKMGWKIRQSQTHKIPYQIVIGDQEQADGTVNIRRYGS 620

Query: 424 GIREDMSLEEVINYASHRFSN 444
              + + LEE I   S   +N
Sbjct: 621 KETKVIPLEEFIENISADVAN 641


>gi|88810462|ref|ZP_01125719.1| prolyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
 gi|88792092|gb|EAR23202.1| prolyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
          Length = 569

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 121/238 (50%), Positives = 163/238 (68%), Gaps = 1/238 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR + + L   +E P DAEI SH+LMLR G+I +   G+Y+WLPLG + L NV  ++REE
Sbjct: 1   MRVTGFPLFTSREIPADAEIISHQLMLRAGLIARLGAGLYTWLPLGLRVLRNVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G++E+ +P +Q A+LW ESGR++ YG E+LRL DR+ +   +GPTHEEV+TD+ R 
Sbjct: 61  MDRIGSLEVLMPAVQPAELWQESGRWEQYGPELLRLKDRHAREFCFGPTHEEVITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP T+YQIQ KFRDE+RPRFGVMR+REFLMKDAYSF L     + +Y  M  +
Sbjct: 121 EIHSYRQLPVTYYQIQTKFRDEIRPRFGVMRAREFLMKDAYSFHLDQASLEATYRAMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           Y RIF RL L    +RA++G IGG +S EF VLAD+GE  +   +   ++   +E   
Sbjct: 181 YSRIFQRLNLDFRAVRADTGAIGGSVSEEFHVLADSGEDAIAVCRHC-NYAANTELAQ 237



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/194 (31%), Positives = 97/194 (50%), Gaps = 3/194 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A     +D+   +  +  P         RGIEVGH+F  G KYS  M A      G 
Sbjct: 372 GRDAALPERADLRTVRSGEGCPSCAGSLQIKRGIEVGHVFQLGAKYSESMDARVLNEHGD 431

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEK 367
              + MG YGIG  RVVAA IE +HD +GIIWP  +APF++++++I AH  +   +  E+
Sbjct: 432 QVPMIMGCYGIGVSRVVAAAIEQNHDERGIIWPTPLAPFQVAIVSINAHRSEAVHNEAER 491

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           ++  L   G +  WDD   + G +FA  +L+G P ++++  + +S   VE + R      
Sbjct: 492 LHEALGAAGLEPLWDDREARPGVKFADMELIGIPHRLVISDRGLSAGTVEYRGRSEPTSR 551

Query: 428 DMSLEEVINYASHR 441
            +  E V+ +    
Sbjct: 552 HLPCERVVEFLRDL 565


>gi|328944057|ref|ZP_08241522.1| proline--tRNA ligase [Atopobium vaginae DSM 15829]
 gi|327492026|gb|EGF23800.1| proline--tRNA ligase [Atopobium vaginae DSM 15829]
          Length = 616

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 115/261 (44%), Positives = 161/261 (61%), Gaps = 1/261 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK + P L+E+P DA+IASHKL++R GMI + + G+YS+LPL  +++  + +IIREE 
Sbjct: 47  RMSKLYAPTLKEDPTDADIASHKLLVRAGMIRKAAAGLYSYLPLAWRSIQKIESIIREEM 106

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
               A EM  P L  A+LW +SGR+ +YG E++RL DR+D     GPTHEE  TD+ R+ 
Sbjct: 107 EAIDAQEMLAPILTDAELWHQSGRWGAYGPELMRLTDRHDHEYALGPTHEETFTDLIRNE 166

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +KSY++LP T Y IQ KFRDE RPRFG+MR REF+MKD YSF    E     Y +   +Y
Sbjct: 167 LKSYKDLPVTLYHIQDKFRDERRPRFGLMRGREFIMKDGYSFCANQESLHECYEQEKDAY 226

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFD 240
             I  R GL+++P+ A+SG IGGD S EF+ LAD GE + ++C          +     +
Sbjct: 227 ATIARRCGLRAVPVVADSGQIGGDTSVEFMALADAGEAELIYCDACDYAADTEAAVGQIN 286

Query: 241 DIISLNSIVEQWTAPYAATSD 261
            +    +  E+   P   T +
Sbjct: 287 VLDDEVAACEKIKTPACQTIE 307



 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 80/194 (41%), Positives = 114/194 (58%), Gaps = 2/194 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+   +  DS P       SARGIE+  +F  GTKYS  M ATF   DG +    MG
Sbjct: 421 EWQDLIVTEAGDSCPCCSAALKSARGIEISQVFQLGTKYSKAMGATFMDEDGTEKPFIMG 480

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R +AAV+E SHD  GIIWP SVAP+++++I +  HD+      +++   L K 
Sbjct: 481 CYGIGVSRTLAAVVEQSHDEHGIIWPVSVAPYEVAVIPLDVHDETVWPVAQRLAEGLIKA 540

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD GE+ G +F  ADL+GFP QV+ G K ++ + VE+K+R TG R ++ ++EV+
Sbjct: 541 GIEVIVDDRGERPGIKFNDADLMGFPYQVVCGKKALAHACVEVKNRATGERTEVPVDEVV 600

Query: 436 NYASHRFSNNRPVL 449
           ++  H     R  L
Sbjct: 601 DHLVHEIVPQRQGL 614


>gi|294499151|ref|YP_003562851.1| threonyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294349088|gb|ADE69417.1| threonyl-tRNA synthetase [Bacillus megaterium QM B1551]
          Length = 405

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 164/438 (37%), Gaps = 41/438 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++   R+ +    +L L   M  + + G+  +LP G    + +    +++  + G  E+ 
Sbjct: 5   MEAEKRNHQKLGQELELF--MSIEEAPGMPFFLPNGMIIRNELENYWKQKHYKAGYQEIK 62

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +   +LW +SG ++ Y + M   ++ +++     P +      +F S  +SYR LP 
Sbjct: 63  TPIMMKQELWEQSGHWEHYHENM-YFSNVDEQNYAIKPMNCPGAILLFSSKRRSYRELPI 121

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + ++ L  R EL     G++R R F   DA+ F         +     ++++  F+   
Sbjct: 122 RYAELGLVHRHELSGSLNGLLRVRSFTQDDAHLFV--ELSQIEAEISRILAFIHDFYSHF 179

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P     + E    A+                  S  +   +      + 
Sbjct: 180 GFDYKVELSTRPEKFMGNIETWNQAEK-----------------SLQSVLSEKGLDYQVN 222

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E   A Y    D H   + DSL  + +     ++    F    K+       + G D K 
Sbjct: 223 EGDGAFYGPKIDFH---ILDSLGRSWQCGTVQLD----FLMPEKFDCM----YIGEDNKP 271

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H    +     G++    A++   ++G+  +W   V    + +           +   K+
Sbjct: 272 HRPVMIHRAIYGSVERFMAILIEHYEGQFPLWLAPVQLKLLPIAP------PHVEYAYKV 325

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L   G  V  DD  E+IG +   A++   P   ++G K V +  + ++         
Sbjct: 326 KHELELKGYRVEVDDRIEKIGLKIREAEMQKVPYMAVIGDKEVENESLAMRKHGKKNIGT 385

Query: 429 MSLEEVINYASHRFSNNR 446
           +S+EE   + +   ++NR
Sbjct: 386 VSMEEAAVHLNKEKNSNR 403


>gi|254294721|ref|YP_003060744.1| threonyl-tRNA synthetase [Hirschia baltica ATCC 49814]
 gi|254043252|gb|ACT60047.1| threonyl-tRNA synthetase [Hirschia baltica ATCC 49814]
          Length = 654

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 82/451 (18%), Positives = 154/451 (34%), Gaps = 54/451 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y + + +   RD     ++L L    +   ++G   W P G      + A IR  Q+  G
Sbjct: 232 YLVRLEEAEKRDHRKLGNQLDLF--HLQSEAQGSVFWHPNGFMIWRQLEAYIRRRQDDDG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYGPTHEE 112
            +E+  P L ++  W +SG +  + + M  + D                + M   P +  
Sbjct: 290 YVEVKTPQLLNSVFWEQSGHWSKFRENMFVVPDEIPSVEEEGPVLSGEGELMALKPMNCP 349

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSK 171
               IF+   +SYR+LP    +     R+E      G+MR R+    DA+ F    + + 
Sbjct: 350 AHVQIFKQGTRSYRDLPLRMAEFGCCHRNEPHGALHGIMRVRQMTQDDAHIFCREDQVAN 409

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            +  +    + R++   GL  I  +  + P     + E                   D  
Sbjct: 410 ET-LRFLNLFKRVYGDFGLDQISYKLATRPEQRAGNDE-----------------TWDQA 451

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
             +  T  ++        E   A Y    + H   L D++    +     ++        
Sbjct: 452 EGALATALNEAGLEFDYAEGEGAFYGPKLEFH---LTDAIGRTWQCGTLQLDYVLP---- 504

Query: 292 TKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
                 + AT+ G DG+ H    +     G       ++  ++ G   +W         +
Sbjct: 505 ----ERLDATYVGEDGEKHRPVMLHRAVFGTFERFMGILIENYAGAFPMWLAPTQVAIAT 560

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +              EK+ ARL   G  V  D   E+I  +      +  P+  ++G   
Sbjct: 561 ITP------KADAYAEKVAARLRAKGIRVELDLRHEKINYKVREHSHMKVPVIAVIGMNE 614

Query: 411 VSDSKVEIKHRLTGIR--EDMSLEEVINYAS 439
             + K+ ++    G    E +SL+E     S
Sbjct: 615 AEEEKLALRRFGAGNARPEILSLDEACQLLS 645


>gi|71064999|ref|YP_263726.1| prolyl-tRNA synthetase [Psychrobacter arcticus 273-4]
 gi|114152234|sp|Q4FUL6|SYP_PSYA2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71037984|gb|AAZ18292.1| prolyl-tRNA synthetase, class IIa [Psychrobacter arcticus 273-4]
          Length = 572

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 112/235 (47%), Positives = 159/235 (67%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LM+R G+I + + G+Y WLP+G + L  V  I+REE
Sbjct: 1   MKASQFLFATLKETPSDADIASSQLMVRAGLIRKIASGLYIWLPMGLRVLQKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P  Q A+LW  +GR++ YG E+LR  DR+D+  + GPTHEEV+T++ + 
Sbjct: 61  MQNIGAQEVLMPMTQPAELWQMTGRFNDYGPELLRFKDRHDRDFVLGPTHEEVITNLAQG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP TF+QIQ KFRDE+RPRFGVMR+REF MKDAYSF +       +Y+ M+ +
Sbjct: 121 ELRSYKQLPITFFQIQNKFRDEIRPRFGVMRAREFTMKDAYSFHVDQASLAKTYDDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S    ++    E
Sbjct: 181 YTRIFTRLGLDFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSDS-SEYAANVE 234



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 106/199 (53%), Gaps = 8/199 (4%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A      D+ N    D  P+ K      RGIEVGHIF  G KYS  M+ T  G DGK
Sbjct: 374 ERDANITRIVDIRNVNQGDPSPDGKGTLQIKRGIEVGHIFQLGNKYSQAMNCTVSGDDGK 433

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA------PFKISLINIKAHDQVCR 362
              + MG YGIG  R++AA IE ++D  GI+WP +        PF+++++ +K+ ++   
Sbjct: 434 PVTLMMGCYGIGVSRIIAAAIEQNNDENGIMWPLTPNISDSLAPFEVAIVPMKSKEETVM 493

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                +Y  L  +G +V  DD  E+ G +FA  +L+G P +++V  + +++ K E  +R 
Sbjct: 494 QTATALYDELKALGVNVLLDDRNERPGVKFADLELIGIPHRIVVSDRNLAEDKYEYINRR 553

Query: 423 TGIREDMSLEEVINYASHR 441
              ++ +S +EV+   S +
Sbjct: 554 DTEKQLLSRDEVLAKVSSK 572


>gi|116492462|ref|YP_804197.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Pediococcus
           pentosaceus ATCC 25745]
 gi|122266074|sp|Q03GB7|SYT_PEDPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116102612|gb|ABJ67755.1| Ser-tRNA(Thr) hydrolase [Pediococcus pentosaceus ATCC 25745]
          Length = 648

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 150/444 (33%), Gaps = 39/444 (8%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           L   +E   RD  +  + L L    +  +   G+  W+P G     ++   I +++ + G
Sbjct: 233 LERQKEAHERDHRVIGNNLDLF--FVDPKVGAGLPYWMPNGATIRRSIERYIIDKEVKHG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKS 124
              +  P L + D +  SG +  Y ++M    D  D  M    P +      +++ HI+S
Sbjct: 291 YQHVYTPVLMNLDAYKTSGHWQHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRS 350

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    ++ +  R E       ++    +  +     + P+  +  + K+    + +
Sbjct: 351 YRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVAPDQIQAEFKKVLQLMVEV 410

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDII 243
           +    +     R                  D   T+ +   D M     S      DD+ 
Sbjct: 411 YRDFNITDYTFRLS--------------YRDPANTEKYFDDDEMWNKSQSMLKAAMDDLG 456

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    DV  +    +L   + +S   ++    F             + 
Sbjct: 457 LDYVEAEGEAAFYGPKLDVQTKT---ALGNEETLSTIQLD----FMLP----KQFDLHYV 505

Query: 304 GADGKDHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           GADG++H   M   G+     R  A +IE                    +  I   D + 
Sbjct: 506 GADGEEHRPVMIHRGLVSTMERFTAYLIEMYKGAFPTWLAP------KQVTIIPVKDDLH 559

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +K+   +      V  D   E++G +   A     P  ++VG   + ++ V ++H 
Sbjct: 560 GAYADKLREEMVDKDIRVEVDHRNEKMGYKIREAQTQKIPYILVVGDNELENNSVSVRHY 619

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                ++ +  + IN       + 
Sbjct: 620 GEDDSKNEASADFINNIVREIESY 643


>gi|304382923|ref|ZP_07365405.1| threonine--tRNA ligase [Prevotella marshii DSM 16973]
 gi|304335948|gb|EFM02196.1| threonine--tRNA ligase [Prevotella marshii DSM 16973]
          Length = 654

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 160/443 (36%), Gaps = 36/443 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L      +  KG+  WLP G +    +  ++R+ Q   
Sbjct: 232 EYLVMLEEAKKRDHRKIGKEMELFM-FSERVGKGLPIWLPKGTELRLRLQGMLRKIQKNY 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G  E+  P + S +L+V SG Y  YGK+  +       D+  +  P +     ++F    
Sbjct: 291 GYQEVITPHIGSKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEVFSWKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    +R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 351 RSYKDLPLRIAEFGTVYRYEKSGELHGLTRVRSFTQDDAHIFCRPEQVKSE-FLRVMDII 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F     K++  +                  D  + + +   D +         +   
Sbjct: 410 QTVFKVFDFKNVEAQISLR--------------DPNDREKYIGSDEVWEHSEQSIIEACK 455

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              LN+ +     A Y    D     + D++    ++    ++         ++ L  +A
Sbjct: 456 EKGLNAKIAYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDY----NLPQRFKLEYTA 508

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                + K   V +     G+M    AV+     G   +W           + I    + 
Sbjct: 509 ---DDNSKQTPVMIHRAPFGSMERFTAVLIEHTAGHFPLW------LTPDQVAILPISEK 559

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   K+   L  VG     D+  E+IG +    ++   P  VIVG K  ++  V ++ 
Sbjct: 560 FNDYARKVAHYLDSVGVRANIDERNEKIGRKIRDNEIKRVPYMVIVGEKEAAEGLVSMRK 619

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           +  G +  MS+E+     +   +
Sbjct: 620 QGGGEQATMSMEDFATRINEEVA 642


>gi|320093816|ref|ZP_08025661.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979249|gb|EFW10747.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 669

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 144/441 (32%), Gaps = 27/441 (6%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   L+E  R D      +L L +    +   G+  + P G      +   +RE     G
Sbjct: 242 YQERLKEAERRDHRRLGAELDLFS-FPEEIGPGLPVFHPKGGVLKRVMEDYVREAHIANG 300

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  A+L+  SG    Y   M    D   +A      +  +   IFRS  +SY
Sbjct: 301 FQYVGTPHISKAELFHTSGHLPYYADGMFPPMDDEGQAYYLKAMNCPMHNLIFRSRGRSY 360

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  F++    +R+E      G+ R R     D++S+    +        +    L +
Sbjct: 361 RELPLRFFEFGTVYRNEKSGVLQGLTRVRSITQDDSHSYCTPEQAPGE-VRHLLTFVLTL 419

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G++   +   +    G    +FI    + E     ++   D           +   
Sbjct: 420 LKDFGMEDFYLEVSTRDEDGAKKDKFIG---SDEQWADATRILADIAAE----CAQENGL 472

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y       + +  D++    ++S    +      FG +Y+    A    
Sbjct: 473 RVVDDPGGAAFYGPKI---SVQAKDAIRRTWQMSTIQYDFNQPHRFGLEYTAADGA---- 525

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              +   V + S   GA+     V+   + G    W           + +        D 
Sbjct: 526 ---RHEPVMIHSAKFGAIERFIGVLTEHYAGAFPAW------LAPVQVRLVPVASAFDDY 576

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E++ A+L + G  V  D   ++ G +   A     P  +I G +      V  + R   
Sbjct: 577 VEEVAAKLRERGIRVETDLSDDRFGKKIRNAAKEKVPFTLIAGGEDAEAGAVSFRLRDGS 636

Query: 425 IREDMSLEEVINYASHRFSNN 445
               + ++  +   +   ++ 
Sbjct: 637 QHNGIPVDRAVELIARHVASR 657


>gi|269126329|ref|YP_003299699.1| threonyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
 gi|268311287|gb|ACY97661.1| threonyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
          Length = 684

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 148/444 (33%), Gaps = 37/444 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +        G+  W P G      +    R+     G
Sbjct: 276 YLKMLEEAEKRDHRKLGVELDLFS-FPSAIGGGLAVWHPKGGIVRKVMEDYSRKRHLEAG 334

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L  + L+  SG  D Y + M    + +       P +  +   IF++  +SY
Sbjct: 335 YEFVVTPHLSKSTLFETSGHLDWYAEGMYPPMELDGATYYPKPMNCPMHIMIFKARGRSY 394

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP   +++   +R E      G+ R+R F   DA+ F    + ++     +    + +
Sbjct: 395 RELPLRMFELGTVYRYEKSGVLHGLTRARGFTQDDAHIFVAPDQLAEEL-ASLLKFVVGL 453

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               GL                  EF     T   +        +    +      +   
Sbjct: 454 LRDYGLT-----------------EFEAELATRPEKYVGEIADWEKAQAALEHALQEAGL 496

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A YA   DVH   + D++    ++S   +++        ++ L   A    
Sbjct: 497 PYVIAEGEGAFYAPKIDVH---IRDAIGRRWQLSTLQVDL----QLPQRFDLEFQAA--- 546

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              +     +     G++    A++    +      P  +AP ++  I I A        
Sbjct: 547 DGTRQRPYMIHRALFGSVERFFAILL---EHYAGALPPWLAPVQVVGIPIGASHVPHL-- 601

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            EK+ A+L   G     D   +++  +   A     P  ++ G   VS   V  ++R   
Sbjct: 602 -EKVVAQLRARGIRAEVDASDDRMQKKIRNAQKAKIPYMLLAGDDDVSKDAVSFRYRSGE 660

Query: 425 IREDMSLEEVINYASHRFSNNRPV 448
            +  + + E +            +
Sbjct: 661 QKNGVPIPEAVEEIVRAVEERIQI 684


>gi|257060371|ref|YP_003138259.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 8802]
 gi|256590537|gb|ACV01424.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 8802]
          Length = 598

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 114/240 (47%), Positives = 153/240 (63%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P LQ A+LW ESGR+++Y K    M  L DR D  +  GPTHEEV+T I
Sbjct: 61  MNAAGAQECLLPQLQPAELWRESGRWETYTKAEGIMFSLIDRRDTELGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  + +  K +Y  M
Sbjct: 121 AKEMIRSYRQLPVNLYQIQSKFRDEIRPRFGLMRGREFIMKDAYSFHASEDSLKETYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  +  R GL+   ++A+SG IGG  S EF++LA+ GE +V  ++D   +    E  
Sbjct: 181 DQAYRNMITRCGLEFRAVQADSGAIGGSASQEFMILAEAGEDEVLYTEDG-KYAANVEKA 239



 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 61/172 (35%), Positives = 98/172 (56%), Gaps = 1/172 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     +ARGIEVGHIF  G KYS  M ATF    G++  + MG YG+G  R+  A +E 
Sbjct: 427 PIQTLQTARGIEVGHIFQLGVKYSQAMGATFTNEQGEEKPLIMGCYGVGVSRLAQAAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GIIWP ++AP+   ++    +D    +  EK+Y  L+KVG +   DD  E+ G +
Sbjct: 487 SYDKDGIIWPVAIAPYHAVVVIPNINDAQQVEVAEKLYTELNKVGVETLLDDRDERAGVK 546

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F  A+L+G P +++ G + +   KVE+  R T   +++++++V+       +
Sbjct: 547 FKDAELIGIPYRIVTG-RSLQSGKVELVERSTKNSQEIAIDQVVETLKKLIN 597


>gi|218248302|ref|YP_002373673.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|226699137|sp|B7K1H5|SYP_CYAP8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218168780|gb|ACK67517.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 8801]
          Length = 598

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 114/240 (47%), Positives = 153/240 (63%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P LQ A+LW ESGR+++Y K    M  L DR D  +  GPTHEEV+T I
Sbjct: 61  MNAAGAQECLLPQLQPAELWRESGRWETYTKAEGIMFSLIDRRDTELGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  + +  K +Y  M
Sbjct: 121 AKEMIRSYRQLPVNLYQIQSKFRDEIRPRFGLMRGREFIMKDAYSFHASEDSLKETYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  +  R GL+   ++A+SG IGG  S EF++LA+ GE +V  ++D   +    E  
Sbjct: 181 DQAYRNMITRCGLEFRAVQADSGAIGGSASQEFMILAEAGEDEVLYTEDG-KYAANVEKA 239



 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 61/172 (35%), Positives = 98/172 (56%), Gaps = 1/172 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     +ARGIEVGHIF  G KYS  M ATF    G++  + MG YG+G  R+  A +E 
Sbjct: 427 PIQTLQTARGIEVGHIFQLGVKYSQAMGATFTNEQGEEKPLIMGCYGVGVSRLAQAAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GIIWP ++AP+   ++    +D    +  EK+Y  L+KVG +   DD  E+ G +
Sbjct: 487 SYDKDGIIWPVAIAPYHAVVVIPNINDAQQVEVAEKLYTELNKVGVETLLDDRDERAGVK 546

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F  A+L+G P +++ G + +   KVE+  R T   +++++++V+       +
Sbjct: 547 FKDAELIGIPYRIVTG-RSLQSGKVELVERSTKNSQEIAIDQVVETLKKLIN 597


>gi|303325499|ref|ZP_07355942.1| threonine--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
 gi|302863415|gb|EFL86346.1| threonine--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
          Length = 648

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 82/437 (18%), Positives = 142/437 (32%), Gaps = 43/437 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      +L L        + G+  WLP G      +    R+E  + G
Sbjct: 234 YLKQLEEAKRRDHRKLGRELSLFA-FQEDVAPGMVFWLPKGMLVRAILEDFWRKEHLKRG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L   + W  SG YD Y + M       D A    P +      I+++ ++SY
Sbjct: 293 YDMVQGPQLLRVETWQRSGHYDHYRENM-YFTRIEDDAYGIKPMNCIAHMLIYKNELRSY 351

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  ++++ +  R E      G++R R+F   DA+      +        +      +
Sbjct: 352 RDLPQRYFELGVVHRHEKSGVLHGLLRVRQFTQDDAHILCAPEQLEGE-ILGVIHLIRDL 410

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            H  G +                    V   T       + +  +    +     +    
Sbjct: 411 MHLFGFQYK------------------VAVSTRPESSIGTDEAWELATNALIQAVEKAGL 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    DV    L D +    + S   ++    F    ++      T+ G
Sbjct: 453 PYEINAGDGAFYGPKIDVR---LLDCIGREWQCSTIQVD----FTLPERFD----LTYVG 501

Query: 305 ADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            DG+ H   M    I     R +  +IE              A             +   
Sbjct: 502 QDGERHRPVMVHRAIMGSLERFIGVLIEQYAGALPAWLAPEQARLLTVT-------EAGD 554

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E++   L  +G  V  D   E++G +   A +   P  ++VG K V    V ++ R 
Sbjct: 555 ATVERMRGELQALGIRVTADTRNEKLGFKVREAQVAKVPYILVVGEKEVQADGVNVRLRS 614

Query: 423 TGIREDMSLEEVINYAS 439
                  S+ +V     
Sbjct: 615 GENLGLKSIADVAALIR 631


>gi|22298319|ref|NP_681566.1| prolyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
 gi|81844949|sp|Q8DKT0|SYP_THEEB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|22294498|dbj|BAC08328.1| proline-tRNA ligase [Thermosynechococcus elongatus BP-1]
          Length = 602

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 127/275 (46%), Positives = 165/275 (60%), Gaps = 7/275 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L++ P +AEI SHKL+LR G I + + GIYS+LPL  + L  V+AI+REE
Sbjct: 1   MRLSQMLFVTLRDEPAEAEIPSHKLLLRAGYIRRIASGIYSYLPLMWRVLQKVSAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            NR+GA+E  +P LQ A+LW ESGR+D+Y K    M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MNRSGALECLLPQLQPAELWQESGRWDTYTKAEGIMFSLTDRAQRQLGLGPTHEEVITAL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF       K +Y  M
Sbjct: 121 AKDLIRSYRQLPVHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHADVASLKETYQVM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           + +Y RI  R GL    + A+SG IGG  SHEF+VLA  GE +V  + D   +    E  
Sbjct: 181 YDTYSRILQRCGLTFRAVEADSGAIGGSGSHEFMVLAAAGEDEVLYTADGQ-YAANVEKA 239

Query: 238 ---DFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                D + +    V     P AAT D   E+L  
Sbjct: 240 VSLPPDAVPTTYKTVATLDTPNAATIDALVEQLQC 274



 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 98/172 (56%), Gaps = 1/172 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     +ARGIE+GHIF  GTKYS  M AT+    G++  + MG YGIG  R+  A +E 
Sbjct: 427 PTQHLEAARGIEIGHIFQLGTKYSEAMKATYTNEQGEEVPLVMGCYGIGISRLAQAAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            HD +GI+WP ++AP+++ ++     D     A   +Y +L   G +V  DD  E+ G +
Sbjct: 487 HHDAQGIVWPLAIAPYQVIIVVPNIGDAQQMQAATDLYEQLQAAGIEVLLDDRDERAGVK 546

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F  ADL+G P +++ G + +++ +VE+  R TG +  + L EV+ Y     +
Sbjct: 547 FKDADLIGIPYRLVTG-RAIANGEVELIIRATGAKSTLPLTEVVRYLQKEIA 597


>gi|288575624|ref|ZP_05977335.2| proline--tRNA ligase [Neisseria mucosa ATCC 25996]
 gi|288567367|gb|EFC88927.1| proline--tRNA ligase [Neisseria mucosa ATCC 25996]
          Length = 581

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 122/273 (44%), Positives = 173/273 (63%), Gaps = 5/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 12  MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 71

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 72  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 131

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 132 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 191

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E     
Sbjct: 192 YCRIFTRLGLEFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIELAPTL 250

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            +    +  +             N K  DSL +
Sbjct: 251 PLKGERAAAQAEL----TKVHTPNVKTIDSLVD 279



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 107/227 (47%), Gaps = 7/227 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPEN--KRVS 278
           K + DF               +     +     A      D+ N    D  P+   +   
Sbjct: 355 KVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGRLKL 414

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D KGI
Sbjct: 415 ARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGI 474

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IW  ++APF++ ++ +        R+A +KIYA L   G DV  DD  E+ G     ++L
Sbjct: 475 IWTKAMAPFEVVIVPMNYKKSDAVREAADKIYAELLAAGADVLLDDRDERAGVLLNDSEL 534

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           LG P ++++G + + +  VE   R     + + L E+         +
Sbjct: 535 LGIPHRIVIGDRALKEGNVEYAERRDNQAQTVGLNEIAGKVLAALKD 581


>gi|156975521|ref|YP_001446428.1| prolyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116]
 gi|166980171|sp|A7N1W0|SYP_VIBHB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|156527115|gb|ABU72201.1| hypothetical protein VIBHAR_03253 [Vibrio harveyi ATCC BAA-1116]
          Length = 571

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 112/237 (47%), Positives = 151/237 (63%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D     +   +  RGIEVGHIF  G  YS  M
Sbjct: 366 DDKHYFGINWGRDVELGQVEDLRNVVEGDPSPCGQGTLMLKRGIEVGHIFQLGNVYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +    G DGK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +    
Sbjct: 426 NCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +++ +++ +   +  
Sbjct: 546 YKNRRSGEKTAVAMADIVEHVKAQLQ 571


>gi|312898748|ref|ZP_07758137.1| prolyl-tRNA synthetase [Megasphaera micronuciformis F0359]
 gi|310620179|gb|EFQ03750.1| prolyl-tRNA synthetase [Megasphaera micronuciformis F0359]
          Length = 574

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 124/286 (43%), Positives = 182/286 (63%), Gaps = 4/286 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+++P +A++ASHKLML+ GM+ +++ G+YS+LPLG+K    V  IIR+E
Sbjct: 1   MLASKLYAPTLRDDPAEADVASHKLMLKAGMLRKNAAGLYSFLPLGRKVCLKVENIIRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GA E+ +P +Q A++W E+GR+D YG EM +L DR+D     GPTHEE++T + R+
Sbjct: 61  MNRSGAQEVMMPIVQPAEIWRETGRWDVYGPEMFKLKDRHDNEYCLGPTHEELITTLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   +Q+Q K+RDE+RPRFG+MRSREF+MKDAYSFD+  EG   SY  M+ +
Sbjct: 121 ELRSYKQLPVNLWQMQNKYRDEIRPRFGLMRSREFVMKDAYSFDVDREGMIKSYESMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF   G++  P+ A+SG IGG+ SHEF+ LA  GE  V        F    E    +
Sbjct: 181 YSRIFTECGIEYRPVLADSGQIGGNYSHEFMALAKAGEADVVICTKC-GFAANVEKAVPN 239

Query: 241 DIISLN---SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
            +IS +      E +  P  AT     E++   + +  +  A  I+
Sbjct: 240 TLISEDEELHEAELFETPECATIQDLVEQVKVPIEKTIKAVAFDID 285



 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 74/194 (38%), Positives = 106/194 (54%), Gaps = 4/194 (2%)

Query: 259 TSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T+ +      D  PE        +GIEVG +F  GTKYS  ++ATF   DGK     MG 
Sbjct: 382 TATIRLITEQDVCPECGGEVKLTQGIEVGQVFGLGTKYSESLNATFLDKDGKAKPFVMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R VAA IE  HD KGIIWP + APF+  ++ +   D+      +K+Y  L  + 
Sbjct: 442 YGIGVTRTVAATIEQLHDDKGIIWPVATAPFEAVVLPVNMKDEAIVSVAKKLYDELLDLD 501

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD  E+ G +F  ADL+G+P+++ VGSK  +D KVE+K R T   E++++E    
Sbjct: 502 VDVLLDDRDERAGVKFNDADLIGYPVRLTVGSK-AADGKVEVKIRRTDEEEEVTIEGAAE 560

Query: 437 YASHRFSN-NRPVL 449
           + +    +  +  L
Sbjct: 561 HVARLLRDLRKKHL 574


>gi|307326749|ref|ZP_07605941.1| threonyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306887512|gb|EFN18506.1| threonyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 659

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 71/447 (15%), Positives = 148/447 (33%), Gaps = 37/447 (8%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L +   RD      +L L +    +   G+  + P G      +    R+  + 
Sbjct: 247 KAYLDFLAEAEKRDHRKLGAELDLFS-FPDELGSGLAVFHPKGGVIRKEMEEYSRKRHDE 305

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G   ++ P +  A L+  SG    Y   M    +   +       +  +   IFR+  +
Sbjct: 306 SGYEFVNTPHITKARLFETSGHLPHYMDGMFPPMEFEGQDYYLKAMNCPMHNLIFRARGR 365

Query: 124 SYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R+R F   D++ +    + +    + +    L
Sbjct: 366 SYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDSHIYCTKEQMADEL-DNLLTFVL 424

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    GL    +   +     D S +FI   +             +          +  
Sbjct: 425 DLLRDYGLNDFYLELST----RDDSDKFIGGPEQ-----------WEEATEELRKAAEKQ 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y       + +  D++    ++S   ++                  +
Sbjct: 470 GLELVMDPGGAAFYGPKI---SVQARDAIGRTWQMSTIQVDFNQP--------ERFELEY 518

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG       +     G++    AV+    +     +P  +AP +   I I       
Sbjct: 519 TAADGSRQQPVMIHRALFGSIERFFAVLL---EHYAGAFPAWLAPVQAVGIPIGDGH--- 572

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E+  A+    G  +  D   +++  +   A     P  VIVG + V+++ V  ++R
Sbjct: 573 VPYLEEFAAQAKAKGLRMEVDSSSDRMQKKIRNAQKSKIPFMVIVGDEDVTNNAVSFRYR 632

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPV 448
               +  + ++E +   +        V
Sbjct: 633 DGSQKNGIPIDEALAEIADAVERRIQV 659


>gi|254508639|ref|ZP_05120754.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus 16]
 gi|219548396|gb|EED25406.1| prolyl-tRNA synthetase [Vibrio parahaemolyticus 16]
          Length = 571

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 112/237 (47%), Positives = 151/237 (63%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLEKSYQAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 113/206 (54%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D     +   +  RGIEVGHIF  G  YS  M
Sbjct: 366 DDKHYFGINWGRDVELGQVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGNTYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +    G DGK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +    
Sbjct: 426 NCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R +G +  +++ +++ +   + +
Sbjct: 546 YKNRRSGEKTAVAMADIVEHVKAQLA 571


>gi|227501051|ref|ZP_03931100.1| threonine--tRNA ligase [Anaerococcus tetradius ATCC 35098]
 gi|227216824|gb|EEI82222.1| threonine--tRNA ligase [Anaerococcus tetradius ATCC 35098]
          Length = 667

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 145/442 (32%), Gaps = 42/442 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  + +E   RD      ++ L     H+   G   + P G   ++ +     +  N  G
Sbjct: 259 YEELQKEIEKRDHRKIGREMNLFA--FHEEGPGFPFFHPNGMILMNELLVWWTDVLNNNG 316

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW  SG +D Y + M      + +A    P +       + ++  SY
Sbjct: 317 YGEIKTPLILNEALWHRSGHWDHYKENM-YFTKIDGEAYAVKPMNCPGSVLTYAANQHSY 375

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R EL     G+ R R F   DA+ + +  +  +  Y         +
Sbjct: 376 RDLPIRLAEYGQVHRHELSGTLHGLFRVRTFTQDDAHVYCMPSQIKEEVYKM-IDLADLL 434

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K       + P                           DF         ++   
Sbjct: 435 YSTFGFKYTI-ELSTRP-----------------DDFMGEIKDWDFAEDQLKKALEERGI 476

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D H   L D+     +     ++    F     +      T+  
Sbjct: 477 EYEINPGDGAFYGPKIDFH---LLDAAKREWQCGTIQLD----FQLPQNFD----LTYID 525

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G+      +    +G++     V+     G+  +W           + I         
Sbjct: 526 ENGEKKRPAMLHRALLGSIERFIGVLTEHFAGRFPLW------LNPQQVEIIPVSDKYIP 579

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++  ++ K G  V  D   E +G +   A L+     ++VG K  +  K+ +++R  
Sbjct: 580 YAEELKEKIKKAGYRVNIDYRSEGVGYKIRQAQLMRTNYMLVVGEKEENSGKLTVRNRDA 639

Query: 424 GIREDMSLEEVINYASHRFSNN 445
               D+SLEE I   +   ++ 
Sbjct: 640 KETPDVSLEEFIEKLNEEKASK 661


>gi|190571398|ref|YP_001975756.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018797|ref|ZP_03334605.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|238055114|sp|B3CMJ4|SYT_WOLPP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190357670|emb|CAQ55114.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995748|gb|EEB56388.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 633

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 157/442 (35%), Gaps = 40/442 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
             +L  L+E   RD    +  + L    I + + G   W   G    + + + IR++   
Sbjct: 227 NTYLKRLEEAEKRDHRKIAKDMDLF--HIQEEAVGQIFWHEQGYTLYNVLESYIRKKLMN 284

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L S +LW +SG +D + + M  + +   K +   P +      IF SHI+
Sbjct: 285 NGYFEVKTPILVSKELWEKSGHWDKFRENMFIIDESESKKLAIKPMNCPCHVQIFNSHIR 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F +  + +  +         
Sbjct: 345 SYRDLPIRMAEFGTCHRNESSGSLHGLMRVRGFTQDDAHIFCMEKQVNSETVKF-CDLLK 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++  LG   I ++    P     + E                   D    +      + 
Sbjct: 404 EVYSELGFNEISVKFSDRPDTRSGNDE-----------------VWDRAERALLEAVKEA 446

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    +     L D++  N +     ++       G        A +
Sbjct: 447 GLSYELNPGEGAFYGPKLEFI---LKDAIGRNWQCGTLQVDFILPERLG--------AFY 495

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG  H+   +    +G       ++    +     +P  +AP +++++ I       
Sbjct: 496 IGTDGHKHHPVMLHRAILGTFERFIGILI---ENYAGKFPVWLAPTQLAILTITNESDG- 551

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                +I   L + G  +  D   E+I  +  +      P+  I+G   V++  V +++ 
Sbjct: 552 --YATEISNVLKEQGVRIKTDLTNEKISYKIRLHSSSKVPILWIIGKNEVTNKTVSVRNL 609

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            +  +E  SLE          +
Sbjct: 610 GSEKQESFSLENATELLLKIIN 631


>gi|91223451|ref|ZP_01258716.1| prolyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|269966231|ref|ZP_06180320.1| prolyl-tRNA synthetase [Vibrio alginolyticus 40B]
 gi|91191537|gb|EAS77801.1| prolyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|269829146|gb|EEZ83391.1| prolyl-tRNA synthetase [Vibrio alginolyticus 40B]
          Length = 571

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 112/236 (47%), Positives = 151/236 (63%), Gaps = 1/236 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMRSREF M DAYSFD+  +G + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRSREFSMMDAYSFDIDKDGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           Y + F R+GL   P+ A+SG IGG  S EF VLA++GE  +       D+    E 
Sbjct: 181 YCKAFDRMGLDYRPVLADSGAIGGSGSQEFHVLAESGE-DIIAFSSESDYAANIEK 235



 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 69/190 (36%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D  P  K +    RGIEVGHIF  G  YS  M+    G DGK+  ++M
Sbjct: 382 GQVEDLRNVVEGDPSPCGKGIIQLKRGIEVGHIFQLGNAYSAAMNCGVLGPDGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +     +  ++A EK+YA L+
Sbjct: 442 GCYGIGITRVVAAAIEQNHDKYGIIWPDAIAPFQVAIVPMNMHKSEEVKEAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E K+R TG +  +++ +
Sbjct: 502 AMGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMKEGNFEYKNRATGEKTAVAMTD 561

Query: 434 VINYASHRFS 443
           ++ +   +  
Sbjct: 562 IVEHVKAQLK 571


>gi|298368808|ref|ZP_06980126.1| proline--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282811|gb|EFI24298.1| proline--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 569

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 122/273 (44%), Positives = 173/273 (63%), Gaps = 5/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQTTYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL+  P+ A++G IGG  SHEF VLA++GE  +  S    D+    E     
Sbjct: 181 YCRIFTRLGLEFRPVAADTGSIGGTDSHEFQVLAESGEDVIAYSDT-SDYAANVELAPTL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            +    +  +             N K  DSL +
Sbjct: 240 PLKGERAAAQAEL----TKVHTPNVKTIDSLVD 268



 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 7/229 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPEN--K 275
           F  K + DF               +     +     A      D+ N    D  P+   +
Sbjct: 341 FTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGR 400

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D 
Sbjct: 401 LKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDE 460

Query: 336 KGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           KGIIW  ++APF++ ++ +        R+A +KIY  L   G DV  DD  E+ G     
Sbjct: 461 KGIIWTKAMAPFEVVIVPMNYKKSDAVREAADKIYTELLAAGADVLLDDRDERAGVLLND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++LLG P ++++G + + +  VE   R     + +  +E+         
Sbjct: 521 SELLGIPHRIVIGDRALKEGNVEYAERRDNEAQTVPTDEIAAKVLAALK 569


>gi|285019440|ref|YP_003377151.1| prolyl-tRNA synthetase [Xanthomonas albilineans GPE PC73]
 gi|283474658|emb|CBA17157.1| probable prolyl-trna synthetase protein [Xanthomonas albilineans]
          Length = 564

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 114/223 (51%), Positives = 148/223 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V  ++REE
Sbjct: 1   MRLSQFHLHTTKETPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVETVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+  PT+Q  +LW  +GR+  +G  MLR+ DR ++   Y PT EE   D  R 
Sbjct: 61  MNRAGALEVVFPTIQPRELWDATGRWKKFGDLMLRIRDRKEQDYCYSPTAEEAAADFARH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FYQIQ KFRDE+RPRFGVMR+REFLMKDAYSF L+       Y  M  +
Sbjct: 121 ELNSYKQLPVNFYQIQSKFRDEIRPRFGVMRAREFLMKDAYSFHLSDTDLAREYENMKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y RIF RLGL+   ++A+SG IGGD S EF VLAD+GE  +  
Sbjct: 181 YHRIFTRLGLQFRAVQADSGDIGGDASQEFHVLADSGEDSLAF 223



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 1/167 (0%)

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            +   ARGIEVGH+F  G +Y+  + AT    +GK   + MG YGIG  R+VAA IE +H
Sbjct: 397 GEIRLARGIEVGHVFQLGRQYAQALDATVLDENGKTVAMAMGCYGIGISRIVAAAIEQNH 456

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDAC-EKIYARLSKVGCDVFWDDMGEQIGSQF 392
           D  GI WP  +AP+ +++  I        DA  + + A L + G D   DD G + G+ F
Sbjct: 457 DAAGIRWPQPMAPWAVAICVINPKHDPAIDAAGDALLADLQQAGLDAILDDRGLRAGTMF 516

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           A  +L+G P +V+V  + ++    E + R  G  E ++   ++    
Sbjct: 517 ADIELIGIPHRVVVSERGLAAGTFEYRARSGGDPESLNHTALLAKLR 563


>gi|170078264|ref|YP_001734902.1| prolyl-tRNA synthetase [Synechococcus sp. PCC 7002]
 gi|226701348|sp|B1XP53|SYP_SYNP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169885933|gb|ACA99646.1| prolyl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 601

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 123/276 (44%), Positives = 167/276 (60%), Gaps = 7/276 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P DAEI SHKL+LR G I +  +GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQSLFVTLREDPADAEIPSHKLLLRAGYIRRIGRGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ A++W ESGR+D+Y +    M  L DR D  +  GPTHEEV+T I
Sbjct: 61  MNATGAQETLLPQLQPAEIWQESGRWDTYTQAEGIMFSLRDRLDGELGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF  + E  K +Y  M
Sbjct: 121 AKDMIRSYRQLPQHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHASEECLKKTYADM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  +  R GL+   + A+SG IGG  S EF++LAD GE ++  ++D   +   +E  
Sbjct: 181 DQAYRNMLRRCGLQFRAVEADSGAIGGSGSQEFMILADAGEDEILYTED-EKYAANTEKA 239

Query: 238 ---DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                + I S  +  E+   P  AT +   + L  S
Sbjct: 240 VSLPVEAIASPFNSFEKRETPNTATIESLCKFLNCS 275



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 98/169 (57%), Gaps = 1/169 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     +ARGIE GHIF  GTKYS  M ATF   +GK+H + MG YG+G  R+  A +E 
Sbjct: 427 PTQILQTARGIEAGHIFQLGTKYSEAMGATFTDENGKEHPLVMGCYGVGVSRLAQAAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GIIWP ++AP+   ++      +    A EK+YA L+  G +   DD  E+ G +
Sbjct: 487 SYDENGIIWPVAIAPYHAVVVVPNVKSEEQMAAAEKLYADLNAAGVETILDDRNERAGVK 546

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           F  A+L+G P +V+ G K + D KVE+  R  G R+D+ L+ V+    +
Sbjct: 547 FKDAELIGIPFRVVTG-KSLKDGKVEVVRRKEGDRQDLDLDAVVATLKN 594


>gi|114152276|sp|Q5E719|SYP_VIBF1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 571

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 114/237 (48%), Positives = 153/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRRLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDINKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 62/190 (32%), Positives = 106/190 (55%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +      RGIEVGHIF  GT YS  M+     A+GK+  ++M
Sbjct: 382 GQVEDLRNVVEGDPSPCGKGTLQLKRGIEVGHIFQLGTAYSEAMNCGVLDANGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVA+ IE ++D  GI+WP+++APF ++++ +     +  ++A EK+YA L+
Sbjct: 442 GCYGIGVSRVVASAIEQNNDEYGIVWPEAIAPFTVAIVPMNMHKSERVKEAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G +V +DD  E+ G  F   +L+G P  +++G + + +   E K+R    +E + +  
Sbjct: 502 AMGIEVLFDDRKERPGVMFKDIELIGIPHTIVIGDRSMDEGHFEYKNRRANTKEAVEMAN 561

Query: 434 VINYASHRFS 443
           ++ +   + S
Sbjct: 562 IVEHIKAQLS 571


>gi|302541133|ref|ZP_07293475.1| threonine-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302458751|gb|EFL21844.1| threonine-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 659

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/447 (15%), Positives = 141/447 (31%), Gaps = 37/447 (8%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L +   RD      +L L +    +   G+  + P G      +    R+    
Sbjct: 247 KAYLEFLAEAEKRDHRKLGAELDLFS-FPDELGSGLAVFHPRGGVIRKEMEDYSRKRHEE 305

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G   ++ P +  A L+  SG    Y   M    +   +       +  +   IFR+  +
Sbjct: 306 SGYEFVNSPHITKAKLFETSGHLPHYMDGMFPPMEFEGQDYYLKAMNCPMHNLIFRARGR 365

Query: 124 SYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R+R F   D++ +    + +    + +    L
Sbjct: 366 SYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDSHIYCTKEQMADEL-DNLLTFVL 424

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    GL    +   +         E                +  +          +  
Sbjct: 425 DLLRDYGLNDFYLELSTRDDSDKFMGE---------------PEQWEEATEELRKAAEKQ 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y       + +  D++    ++S   ++      F        +  +
Sbjct: 470 GLELVMDPGGAAFYGPKI---SVQAKDAIGRTWQMSTIQVDFNQPARF--------NLEY 518

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG       +     G++    AV+    +     +P  +AP +   I I       
Sbjct: 519 TAADGSRQQPVMLHRALFGSIERFFAVLL---EHYAGAFPAWLAPVQAVGIPIGDGH--- 572

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E+  A+    G  V  D   +++  +   A     P  VI G + V+   V  ++R
Sbjct: 573 VPYLEEFAAQARAKGLRVEVDSSSDRMQKKIRNAQRSKVPFMVIAGDEDVAAGAVSFRYR 632

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPV 448
               +  + ++E I            V
Sbjct: 633 DGSQKNGIPIDEAIAEIIDVVERRVQV 659


>gi|73667547|ref|YP_303563.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ehrlichia canis
           str. Jake]
 gi|123745825|sp|Q3YQP0|SYT_EHRCJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72394688|gb|AAZ68965.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ehrlichia canis
           str. Jake]
          Length = 633

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 154/438 (35%), Gaps = 40/438 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              Y   +++   RD      +L L    I   + G   W   G      +   IR++  
Sbjct: 228 LKSYLNNLIEIEKRDHRKIGKELELF--HIQNEACGQVFWHKKGWTIYRTIENYIRKKLE 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G IE+  P L + +LW +SG +D + + M  L++  DK +   P +      IF S I
Sbjct: 286 TNGYIEVKTPMLLNKELWEKSGHWDKFRENMF-LSEAEDKVLAIKPMNCPCHIQIFNSKI 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    +  +  R E      G+MR R F   DA+ F    +    +        
Sbjct: 345 RSYRDLPIRMAEFGICHRYEASGALHGLMRVRGFTQDDAHIFCTESQVISEALKF-CNLL 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++   G  +I ++    P     S E                   D    +     + 
Sbjct: 404 MEVYKDFGFTNILVKFSDRPENRAGSDE-----------------TWDRAESALKKSVEA 446

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +     A Y    +     L D++    +     ++       G        A 
Sbjct: 447 ANLNYVLNPGDGAFYGPKLEF---VLKDAIGREWQCGTLQMDFVLPERLG--------AY 495

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G+DGK H+   +    +G       ++   H GK  IW         + ++I    + 
Sbjct: 496 YVGSDGKKHHPIMLHRAILGTFERFIGILIEHHSGKFPIW------LAPTQLSILTISEE 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +    +  +  +    V  D   E+I  +         P+  IVG K V+++ V I++
Sbjct: 550 SIEYANSLKTKAEEHNIRVELDATNEKINYKIRNHIHKKIPVFWIVGKKEVNENSVSIRY 609

Query: 421 RLTGIREDMSLEEVINYA 438
             +  ++ M +++ +   
Sbjct: 610 LESNTQQVMPIDKALKTL 627


>gi|158335473|ref|YP_001516645.1| prolyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|189083486|sp|B0C230|SYP_ACAM1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|158305714|gb|ABW27331.1| prolyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 600

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 115/240 (47%), Positives = 150/240 (62%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRVGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  GA E  +P +Q A+LW ESGR+D+Y +    M  L DR D+ +  GPTHEEV+T +
Sbjct: 61  MDAAGAQECLLPQIQPAELWQESGRWDTYTQAEGIMFALQDRQDRELGLGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       K  Y+KM
Sbjct: 121 ARDMIRSYRQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFSTDEADLKIIYSKM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  I  R GL    + A+SG IGG  S EF+VLA+ GE +V  + D   +    E  
Sbjct: 181 HDAYCNILQRSGLAYRAVDADSGAIGGSGSQEFMVLAEAGEDEVLYTDDG-KYAANVEKA 239



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 60/173 (34%), Positives = 97/173 (56%), Gaps = 1/173 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P+    +ARGIE+GHIF  GTKYS  + AT+    GK+  + MG YG+G  R+  A +E 
Sbjct: 425 PKQTLQTARGIEIGHIFQLGTKYSQALGATYTNEAGKEQPLVMGCYGVGVSRLAQAAVEQ 484

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GI+WP ++AP+   +I     D    +A EK+Y+ L+  G +   DD  E+ G +
Sbjct: 485 SYDKDGIVWPVAIAPYHAIIIIPNGKDSDQVEAAEKLYSELNAAGIETLLDDRTERAGVK 544

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           F  ADL+G P +++ G + + +  VE+  R T     ++L++V+       + 
Sbjct: 545 FKDADLIGIPYRIVTG-RSLKEGNVEMVERATHDAHQIALDQVLPTLKEYLAK 596


>gi|89897864|ref|YP_514974.1| threonyl-tRNA synthetase [Chlamydophila felis Fe/C-56]
 gi|123722330|sp|Q256F9|SYT_CHLFF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|89331236|dbj|BAE80829.1| threoninyl tRNA synthetase [Chlamydophila felis Fe/C-56]
          Length = 635

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 144/445 (32%), Gaps = 42/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD  +   KL L +    + S G+  + P G    D +    +    
Sbjct: 223 LKEHLHQLEEAKKRDHRVLGTKLDLFSQ--QECSAGMPFFHPRGMIIWDALIGYWKRLHQ 280

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P L +  LW  SG + +Y + M  L   +++     P +       +++ +
Sbjct: 281 LAGYKEILTPQLVNRSLWEVSGHWSNYKENMYTLK-IDEEDYAIKPMNCPGCMLYYKTRL 339

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY+  P    +I    R E+     G+MR R F   DA+   LTPE  +     +    
Sbjct: 340 HSYKEFPLRIAEIGHVHRYEISGALSGLMRVRAFHQDDAH-VFLTPEQVEEETLNILNLV 398

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   GL+   +   + P                E     S +  D    +      +
Sbjct: 399 SELYSTFGLEYH-LELSTRP----------------EKATIGSDELWDLATAALERALIN 441

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             +   I     A Y    D+H           K    R  + G I              
Sbjct: 442 SNTPFVINPGDGAFYGPKIDIHV----------KDAIQRTWQCGTI-QLDMFLPERFELE 490

Query: 302 FKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +  A G+     M    +     R +  +IE       +                     
Sbjct: 491 YTNAQGEKSTPIMLHRALFGSIERFLGILIEHFKGRFPLWLSPEHVRLITVA-------D 543

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   +++     ++G  V  DD  E +  +   A  +     V +G + + ++ + ++
Sbjct: 544 RHQPRAQELATAWQQLGFVVTVDDSNESVSKKIRNAQNMQVNYMVTLGDREIEENTLAVR 603

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R   +  +M+++  IN      ++
Sbjct: 604 TRDNRVLNNMTIDTFINTILEEKNS 628


>gi|103486185|ref|YP_615746.1| threonyl-tRNA synthetase [Sphingopyxis alaskensis RB2256]
 gi|123380057|sp|Q1GVA9|SYT_SPHAL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|98976262|gb|ABF52413.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Sphingopyxis
           alaskensis RB2256]
          Length = 667

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 80/452 (17%), Positives = 145/452 (32%), Gaps = 48/452 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++ + + +   RD      ++ L    + Q + G   W P G      + A +R   +
Sbjct: 238 LAEHLVRLEEAAKRDHRRLGQEMDLF--HLQQEAHGSVFWHPNGFVVWRELEAYMRRAID 295

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-------------AMIYGPT 109
             G  E+  P +  A  W +SG +  Y + M  + D                  M   P 
Sbjct: 296 AAGYREVKTPQVMDARQWEQSGHWGKYRENMFVIPDEVPNTEDEGPIVSDDAEWMALKPM 355

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPE 168
           +      IFR  +KSYR+LP   Y+     R+E      G+MR R+F   DA+ F    +
Sbjct: 356 NCPAHVLIFRQGMKSYRDLPLRLYENGCCHRNEPHGALHGLMRVRQFTQDDAHIFCREDQ 415

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             +        ++  +  R+        A    +  +       + D  E ++  +    
Sbjct: 416 IVEE-----VRNFCALADRIYKDFGFTYAIKLALRPEKRFGSDAMWDKSEDELRNAVIEA 470

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                               +    A YA   + H   L D++    +V     +     
Sbjct: 471 GLATEQYG---------WEELPGEGAFYAPKLEWH---LTDAIGRTWQVGTIQSDRVLPD 518

Query: 289 YFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                      A++ G DG+ H    +     G+      ++     G+   W   V   
Sbjct: 519 RLD--------ASYIGEDGERHRPVMLHRAIFGSYERFIGILIEHFVGRFPTWLAPVQAV 570

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
             +++          D  +   ARL   G     D   E+I  +     L   P  ++VG
Sbjct: 571 VATIV------SDADDYAKAATARLVAAGIRTESDLRNEKINYKVREHSLAKVPHLLVVG 624

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +   +  V I+      +  M L E I    
Sbjct: 625 KREAEEGTVAIRTLGQDGQRIMPLAEAIAMLK 656


>gi|260889054|ref|ZP_05900317.1| proline--tRNA ligase [Leptotrichia hofstadii F0254]
 gi|260861114|gb|EEX75614.1| proline--tRNA ligase [Leptotrichia hofstadii F0254]
          Length = 570

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 128/279 (45%), Positives = 172/279 (61%), Gaps = 3/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK FL   +E P++A+I SH+LMLR  MI Q ++G+Y++LP G + L  +  I REE
Sbjct: 1   MRLSKAFLKTYKEAPKEAQIVSHQLMLRAFMIKQLTRGVYTYLPFGYRVLKKIENITREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ A LW ESGR+ +YG E++RL DRN++    GPTHEEV+TDI R 
Sbjct: 61  MDRAGAQELLMPVLQPASLWEESGRWFAYGPELMRLKDRNEREFSLGPTHEEVITDIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LPF  YQIQ KFRDE+RPRFG+MR REF+MKD YSF LT E     Y  M  +
Sbjct: 121 SISSYKELPFNVYQIQTKFRDEMRPRFGLMRGREFVMKDGYSFHLTQESLDEEYLNMKDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--D 238
           Y RIF R+GL    + A++G IGGD+SHEF+VLA++GE  +  S    D+    E     
Sbjct: 181 YSRIFERMGLNYRAVEADTGSIGGDVSHEFMVLAESGEDDILYSDS-SDYAANVEKATSI 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            +   S    + +          +     F ++P+ K V
Sbjct: 240 IELKESDEEKLPKELVETPNAKTIEELANFLNIPKEKTV 278



 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 113/202 (55%), Gaps = 3/202 (1%)

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATF 302
               V      Y   +D+   +  D  P+ K     ARGIEVGHIF  G KYS  ++AT 
Sbjct: 370 HYVNVNIEDLAYDLAADIRTARAGDLSPDGKGILKIARGIEVGHIFKLGEKYSKALNATV 429

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              +GK   ++MG YG+G  R+++A IE +HD  GIIWP ++AP+   +I     D+   
Sbjct: 430 LDENGKQAIMKMGCYGMGMSRIISAAIEQNHDEYGIIWPKAIAPYHADIIIANMKDETQV 489

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+Y  L++   +   DD  E+ G +F  ADL+GFPL+++VG K  +D  VEIK R 
Sbjct: 490 NIGEKLYNELNQNKIEAVLDDRNERAGFKFKDADLIGFPLKIVVG-KGAADGIVEIKDRK 548

Query: 423 TGIREDMSLEEVINYASHRFSN 444
           TG   D+ +E+V+ + ++  + 
Sbjct: 549 TGESTDVKVEDVLKFVNNFMAE 570


>gi|88657649|ref|YP_506841.1| threonyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
 gi|123750088|sp|Q2GI92|SYT_EHRCR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|88599106|gb|ABD44575.1| threonyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
          Length = 633

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/437 (19%), Positives = 151/437 (34%), Gaps = 41/437 (9%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L +   RD      +L L    I   + G   W   G      +   IR++   
Sbjct: 229 KLYLNNLIEAEKRDHRKIGRELELF--HIQNEACGQIFWHTKGWTIYRIIENYIRKKLEN 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G IE+  P L + +LW +SG +D + + M  L++  DK +   P +      IF S I+
Sbjct: 287 NGYIEVKTPILLNKELWEKSGHWDKFRENMF-LSEAEDKTLAIKPMNCPCHIQIFNSKIR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R E      G+MR R F   DA+ F    + +  +     +   
Sbjct: 346 SYRDLPIRMAEFGTCHRYEASGALHGLMRVRGFTQDDAHIFCTESQITSEALKFCNLLIE 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G   I ++    P     S E                   D    +     +  
Sbjct: 406 -IYKDFGFTDILVKFSDRPKNRAGSDE-----------------IWDKAEAALKKSVEVA 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    +     L D++    +     ++       G        A +
Sbjct: 448 NLSYVLNPGDGAFYGPKLEF---TLKDAIGREWQCGTLQMDFVLPERLG--------AYY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G+DGK H+   +    +G       ++   H GK  +W           ++I    +  
Sbjct: 497 IGSDGKKHHPVMLHRAILGTFERFIGILIEHHSGKFPMW------LAPIQLSILTISEDS 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +    +  +  +    V  D   E+I  +         P+  IVG K V ++ V I++ 
Sbjct: 551 INYANSLKIKAEEHNIRVELDTTNEKINYKIRNHIHKKVPVFWIVGKKEVEENSVSIRYL 610

Query: 422 LTGIREDMSLEEVINYA 438
            +  +  M +++ +   
Sbjct: 611 ESNKQHVMPIDKALKTL 627


>gi|316933337|ref|YP_004108319.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
 gi|315601051|gb|ADU43586.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
          Length = 693

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 140/443 (31%), Gaps = 38/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W   G     ++   +R       
Sbjct: 263 YLHQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHAKGWSLFQSLVGYMRRRL-AGD 319

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M       +     +     P +      IF+ 
Sbjct: 320 YDEVNAPQILDKVLWETSGHWEWYRENMFAAQSAGEDAEDKRWFALKPMNCPGHVQIFKH 379

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + ++       +
Sbjct: 380 GLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVFCTEAQLAEECIKINDL 439

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                        + ++  + P     + E    A+        +    +      N   
Sbjct: 440 ILSTYSDFGFEGELTVKLSTRPDKRVGTDEMWDHAER-----VMATVLSEIKAKGGNRIK 494

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +I           A Y    +     L D++  + +     ++      FG        
Sbjct: 495 TEI------NPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVDFNLPERFG-------- 537

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +  ADG     V +     G+M     ++   + G   +W   V     ++       
Sbjct: 538 AFYIDADGAKKAPVMVHRAICGSMERFTGILIEHYAGNFPLWLAPVQVVVTTIT------ 591

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  +K+ A L K G     D   E+I  +     L   P  ++VG K      V +
Sbjct: 592 SEGDEYAKKVLAALRKAGLRADIDLRNEKINFKVREHSLAKVPALLVVGKKEAETHSVSV 651

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  ++ M  +E I      
Sbjct: 652 RRLGSDGQKVMPTDEAIAALVDE 674


>gi|325957298|ref|YP_004292710.1| threonyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|325333863|gb|ADZ07771.1| threonyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|327184028|gb|AEA32475.1| threonyl-tRNA synthetase [Lactobacillus amylovorus GRL 1118]
          Length = 644

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 77/433 (17%), Positives = 153/433 (35%), Gaps = 34/433 (7%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      V   I + +   G   +  P L
Sbjct: 239 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVL 296

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y  +M    D  D  M    P +      I++ HI+SYR+LP    
Sbjct: 297 MNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSYRDLPLRVA 356

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++    +  
Sbjct: 357 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQDE-FAKILKLIMDVYKDFDITD 415

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 416 YYFRLS-------------YRDPKNTEKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGE 462

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G DG++H  
Sbjct: 463 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLTYVGQDGEEHRP 511

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            M     G +  +   I    +     +P  +AP +  +I +   +    +  EK+   L
Sbjct: 512 VMIHR--GIVGTMERFIAYLTEIYKGAFPTWLAPIQAEIIPVN--NDAHGEYAEKVRQEL 567

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +K G     D+  E++G +   +     P  +++G + + +  V ++   T      SL+
Sbjct: 568 AKRGFRAEVDNRNEKMGYKIRESQTQKVPYTLVLGDEEMKNGSVNVRRYGTDEEISKSLD 627

Query: 433 EVINYASHRFSNN 445
           + I        + 
Sbjct: 628 DFIKEIDADVKSY 640


>gi|86357812|ref|YP_469704.1| threonyl-tRNA synthetase [Rhizobium etli CFN 42]
 gi|123765783|sp|Q2K859|SYT_RHIEC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|86281914|gb|ABC90977.1| threonyl-tRNA synthetase protein [Rhizobium etli CFN 42]
          Length = 668

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 145/447 (32%), Gaps = 46/447 (10%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      ++ L      +   G+  W   G +    + A +R       
Sbjct: 234 YLHMLAEAEKRDHRKLGREMDLF--HFQEEGPGVVFWHGKGWRIFQTLVAYMRRRL-AID 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEML-----------RLADRNDKAMIYGPTHEEVM 114
             E++ P +    LW  SG +  Y + M               + +++     P +    
Sbjct: 291 YEEVNAPQVLDTSLWETSGHWGWYQENMFGVKSAHAMTHPDDKEADNRVFALKPMNCPGH 350

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHS 173
             IF+  +KSYR LP    +  L  R E      G+MR R F   DA+ F    + +   
Sbjct: 351 VQIFKHGLKSYRELPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAEC 410

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                   L ++   G K I ++  + P     S      A+   T V          I 
Sbjct: 411 LKIN-DLILSVYEDFGFKEIVVKLSTRPEKRVGSDALWDRAEAVMTDVL-------KTIE 462

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           +++        L        A Y    +     L D++    +     ++      FG  
Sbjct: 463 AQSEGRIKTGIL----PGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG-- 513

Query: 294 YSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
                 A +  ++ +      +     G+M     ++  +  G   +W   +     ++ 
Sbjct: 514 ------AFYIDSNSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLWVSPLQVVVATIT 567

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                         ++   L + G +V  D   E+I  +     +   P+ ++ G K   
Sbjct: 568 ------SEADAYGLEVAEALREAGLNVETDFRNEKINYKIREHSVTKVPVIIVCGRKEAE 621

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYAS 439
           D  V I+   +  +  M L+  +   +
Sbjct: 622 DRTVNIRRLGSQDQVSMGLDTAVESLA 648


>gi|229530020|ref|ZP_04419410.1| prolyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|229333794|gb|EEN99280.1| prolyl-tRNA synthetase [Vibrio cholerae 12129(1)]
          Length = 571

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 115/237 (48%), Positives = 153/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q   LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFQLWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+   G + SY  M V+
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKAGLEKSYEAMHVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL   P+ A++G IGG+ SHEF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLDYRPVLADTGAIGGNGSHEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/190 (35%), Positives = 111/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  GT YS  M+     ++GK+  ++M
Sbjct: 382 GKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +     +  + A EK+YA L+
Sbjct: 442 GCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHKSERVQQAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E K+R  G +E +++E 
Sbjct: 502 AAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFEYKNRRQGEKEAVAMES 561

Query: 434 VINYASHRFS 443
           +I++   + +
Sbjct: 562 IIDFIQAKLA 571


>gi|315503148|ref|YP_004082035.1| threonyl-tRNA synthetase [Micromonospora sp. L5]
 gi|315409767|gb|ADU07884.1| threonyl-tRNA synthetase [Micromonospora sp. L5]
          Length = 671

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 68/444 (15%), Positives = 132/444 (29%), Gaps = 35/444 (7%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E  R D       L L +    +   G+  + P G      +   +R     
Sbjct: 250 KAYLKLLEEAARRDHRKLGADLDLFS-FPDEIGSGLPVFHPKGGVLKRVMEDYVRARHVE 308

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +    L+  SG    Y   M    +           +  +   I+RS  +
Sbjct: 309 EGFDYVGTPHISKEGLFHTSGHLPYYKDTMFPPMEMEGSDYYLKAMNCPMHNLIYRSRGR 368

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R R F   D++S+    +        +    L
Sbjct: 369 SYRQLPIRLFEFGTVYRYEKSGVIHGLTRVRGFTQDDSHSYCTREQAPSE-IKHLLGFVL 427

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G+    +   +               ++   +   S +              + 
Sbjct: 428 SLLRDFGIDDFYLELSTRD-------------ESKPDKFVGSDEDWATATAVLEQCALET 474

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y       + +  D++    ++S    +      FG          +
Sbjct: 475 GLELVPDPGGAAFYGPKI---SVQAKDAIGRTWQMSTIQYDFNQPKGFG--------LEY 523

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + ADG       +     G++     V+   + G    W   V    I +          
Sbjct: 524 QAADGTRQQPVMIHCAKFGSIERFIGVLTEHYAGAFPAWLAPVQVVGIPI------RDEH 577

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D      A L + G     D   +++  +   A     P  VI G   V+   V  ++R
Sbjct: 578 GDYLVDFAATLRRHGVRAEVDLGDDRMQKKIRNAQQQKIPFMVIAGDDDVAAGTVSFRYR 637

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
               R  + ++E + +      + 
Sbjct: 638 DGSQRNGVPVDEAVAHVREVVESR 661


>gi|260575744|ref|ZP_05843741.1| threonyl-tRNA synthetase [Rhodobacter sp. SW2]
 gi|259022142|gb|EEW25441.1| threonyl-tRNA synthetase [Rhodobacter sp. SW2]
          Length = 648

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 148/445 (33%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G+  W P G +    +   +R  Q  
Sbjct: 234 KAHLTMLEEAAKRDHRRLGKEMDLF--HLQEEAPGMVFWHPNGWQVWRTLEDYMRRRQRE 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G  E+  P +    LW  SG +++Y + M  +       +  +     P +      ++
Sbjct: 292 AGYREIRTPQVVDRVLWERSGHWEAYRENMFIVEVDEEGAKEKRINALKPMNCPCHVQVY 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   DA+ F  T    +      
Sbjct: 352 NQGLKSYRDLPLRLAEFGACHRYESSGSMHGLMRVRGFTQDDAHIFC-TEAQIESECAAF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++H LG +S  ++  + P     + E     +T                 +   
Sbjct: 411 IELLSSVYHDLGFESFDIKLSTRPEVRIGTDEDWDRVET-----------------ALEN 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               +     I     A Y    D    KL D++    +     ++       G      
Sbjct: 454 AIKKVGRSYVIDPGEGAFYGPKLDF---KLTDAIGRQWQCGTFQVDPNLPSRLG------ 504

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A + G DG  H    +    +G+      ++  ++ GK   W          ++    
Sbjct: 505 --AEYIGEDGARHRPFMLHRAILGSFERFLGILIENYAGKLPFWLAPRQVVVAGIV---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     ++ A L K G     D   E+I  +     +   P+ + +G K V +  V
Sbjct: 559 --SDADAYVHEVVAELRKAGVRAEADVRNEKINYKVREHSVGKVPVILAIGMKEVEERSV 616

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++       +  SL  ++   +H 
Sbjct: 617 SVRRLGETRTDSESLTGIVATLAHE 641


>gi|218295928|ref|ZP_03496708.1| threonyl-tRNA synthetase [Thermus aquaticus Y51MC23]
 gi|218243666|gb|EED10194.1| threonyl-tRNA synthetase [Thermus aquaticus Y51MC23]
          Length = 660

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 85/451 (18%), Positives = 156/451 (34%), Gaps = 41/451 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
             +Y   + +   RD      +L L   +I     KG+  WLP G    + + A +REEQ
Sbjct: 238 LKEYLWQLEEAKKRDHRRLGRELELF--LIDPMVGKGLVLWLPKGNVIREELIAFMREEQ 295

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDI 117
            + G   ++ P + S +L+  SG Y  Y +         ++      +  P +      I
Sbjct: 296 IKRGYQLVTTPHIGSLELYKTSGHYPYYAESQFPPISFKERGEEEEYLLKPMNCPHHIRI 355

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +    +SYR LP    +    +R E      G+ R R F   DA+ F    +     +  
Sbjct: 356 YAHKKRSYRELPLRLAEFGTVYRYEKAGELLGLTRVRGFTQDDAHIFCAPEDVKGE-FLG 414

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L++F  LGLK    R  +               D    +    +           
Sbjct: 415 VLDLVLKVFATLGLKDFRARIGTR--------------DPKSDKYVGDEARWSLAERQIE 460

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               +     ++ E   A Y    D     + D+L    ++    ++      FG     
Sbjct: 461 EAALEAGLHYTVEEGDAAFYGPKLDF---VVKDALGREWQLGTIQVDYNLPERFG----- 512

Query: 297 PMSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+ G DG++H   +      G++     ++     G   +W   V    + +    
Sbjct: 513 ---LTYVGKDGEEHRPVVLHRAPFGSLERFIGILIEHFAGDFPLWLSPVQVVVVPV---- 565

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   D   ++  RL + G     D   E++ ++   A+L   P  ++VG K  ++  
Sbjct: 566 --SEKQEDYALEVTHRLKEAGLRAEADTRPERMQARIRDAELKKVPYVLVVGEKEKAEGA 623

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           V ++ R  G    M L   +  A   +   R
Sbjct: 624 VSVRRRHRGNLGVMPLFTFVEGALREYRERR 654


>gi|297620271|ref|YP_003708408.1| Threonyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
 gi|297375572|gb|ADI37402.1| Threonyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
          Length = 642

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 144/444 (32%), Gaps = 38/444 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD  +   KL L +    + + G+    P G      +   +RE   
Sbjct: 225 LKEYLHQMEEAKKRDHRVIGSKLDLFS--FKEEAAGMPFIHPKGMTVWTELTNYLRECLG 282

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
               +E+  P + S  LW  SG + +Y + M   ++  D      P +       ++SH+
Sbjct: 283 SANYVEIKTPIMLSRGLWETSGHWFNYRENMFT-SEIEDHDYAIKPMNCPGCMLYYKSHV 341

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP    +I    R E      G+ R R F   DA+ F   P   +     +   +
Sbjct: 342 HSYRELPLRVAEIGNVHRYEPSGALSGLFRVRSFHQDDAHIFMK-PSDIEGEILSLLNLF 400

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +++   GL    +   + P                E     + +  +          D 
Sbjct: 401 EKLYSTFGLSYH-LELSTRP----------------EKGTIGTDEEWEQATAGLKNALDK 443

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D H   + D++    +     +++        +++L  +A+
Sbjct: 444 WGHDYKINEGDGAFYGPKIDFH---IRDAINRTWQCGTIQLDMA----LPQRFALEYTAS 496

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 +   V +     G++     ++     GK  +W             I       
Sbjct: 497 ---DGERHRPVMLHRAIFGSIERFMGILIEHFAGKFPLW------ISPLQARILTVADRH 547

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++  +L + G  V  D  GE +  +   A L      + VG K +    + ++ R
Sbjct: 548 EPYAHELMQKLKQQGFRVDIDATGESVSKKVRTAQLTQINYILTVGDKEMEHKTLNLRTR 607

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
              +  ++ LE  I          
Sbjct: 608 DNVVHGEIDLEAFIIALKKEKEER 631


>gi|329118470|ref|ZP_08247175.1| proline--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465411|gb|EGF11691.1| proline--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 571

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 118/252 (46%), Positives = 165/252 (65%), Gaps = 2/252 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASRFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+TDI R 
Sbjct: 61  MERAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVITDIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFV 179
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF        +  Y  M+ 
Sbjct: 121 EITSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYESLVRDGYQPMYD 180

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E    
Sbjct: 181 AYCRIFDRLGLNYRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSD-ASDYAANIELAQT 239

Query: 240 DDIISLNSIVEQ 251
             +       E+
Sbjct: 240 LRLQGERRPSEK 251



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/196 (35%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A     +D+ N    D     +     ARGIEVGH+F    KYS  M+A F  ++GK
Sbjct: 375 GRDAAEPEFADLRNVVEGDPSPCGKGSLKLARGIEVGHVFQLRDKYSAAMNAAFLDSNGK 434

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  R+VAA IE ++DG+GIIW D++APF+  ++ +        R+A +K
Sbjct: 435 SQIMEMGCYGIGITRIVAAAIEQNNDGRGIIWTDAMAPFQAVIVPMNYKKSDAVREAADK 494

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G   A ++LLG P ++++G + + + KVE   R     +
Sbjct: 495 IYAELCAAGADVLLDDRDERAGVLLADSELLGIPHRIVIGDRGLKEGKVEYARRTDSEAQ 554

Query: 428 DMSLEEVINYASHRFS 443
            +++EE          
Sbjct: 555 SVAVEEAAAKVLAALR 570


>gi|227824508|ref|ZP_03989340.1| prolyl-tRNA synthetase [Acidaminococcus sp. D21]
 gi|226905007|gb|EEH90925.1| prolyl-tRNA synthetase [Acidaminococcus sp. D21]
          Length = 571

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 188/371 (50%), Gaps = 8/371 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+E P +A + SHKLMLR G I + + G+Y++LPL  K++  +  IIREE
Sbjct: 1   MLVSKLYAPTLREVPAEAVLESHKLMLRAGYIRKIAGGLYTYLPLAWKSIKKIERIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +   + E+ +P +Q +++W ESGR+D YG EM R+ DR+ +    GPTHEE++T + ++
Sbjct: 61  MDAIDSQEIMMPIVQPSEIWKESGRWDVYGAEMFRVRDRHGREFCLGPTHEEMITTLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP + YQIQ KFRDE RPRFG+MRSREF+MKDAY+FD    G   SY KM+ +
Sbjct: 121 ELHSYRQLPTSLYQIQSKFRDEKRPRFGLMRSREFIMKDAYTFDADEAGLDESYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL   P+ A+ G IGG+ SHEF+ +A +GE  +       D+    E  + +
Sbjct: 181 YARIFDRCGLNYRPVEADPGAIGGNGSHEFMGIAASGEAGIVYCDTC-DYAADVEKAECE 239

Query: 241 DIISLNSIVEQW---TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS-L 296
            + S      +      P   T +   E L   + ++ +  A   + G +     +    
Sbjct: 240 ALPSQEEAPRELHTIGTPGCNTIEAVCEYLHAPIEKSVKAVALTSDKGGLILCFVRGDHE 299

Query: 297 PMSATFKGADGKDHYVQMG---SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                   A G +  +          G +      I    +   I+   +V         
Sbjct: 300 VNEIKVTNAVGANEVMMASDEQIRAAGTVPGFMGPIGLDLNKCTILIDATVMNMHNVCCG 359

Query: 354 IKAHDQVCRDA 364
               D    DA
Sbjct: 360 ANEVDTHYVDA 370



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/210 (33%), Positives = 107/210 (50%), Gaps = 4/210 (1%)

Query: 239 FDDIISLNSIVEQWTAP-YAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYS 295
            +++ +     E      Y    D+      D  P  K     ARGIEVG +F   TKYS
Sbjct: 360 ANEVDTHYVDAEPCRDFVYTKVLDIRTAHEGDQCPHCKGHLKEARGIEVGQVFKLYTKYS 419

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
             + ATF   +GK+    MGSYGIG  R +AAVIE  HD  G I P ++AP+++ ++ + 
Sbjct: 420 EALHATFLDPEGKEKPFYMGSYGIGVGRTLAAVIEQYHDANGAIMPKNIAPYEVIVLPVN 479

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             D+       +IY  L+  G D   DD  E+ G +F  ADL+G+P++V+VG K +    
Sbjct: 480 VKDEESFAKAGEIYQALNAQGIDAILDDRDERAGVKFKDADLIGYPVRVVVGPKTLQRGA 539

Query: 416 VEIKHRLTGIREDMSLE-EVINYASHRFSN 444
           +E+K R TG   D+ L+ + ++      S 
Sbjct: 540 MEVKVRYTGEMCDLPLDGDYVSALKDILSK 569


>gi|149185120|ref|ZP_01863437.1| threonyl-tRNA synthetase [Erythrobacter sp. SD-21]
 gi|148831231|gb|EDL49665.1| threonyl-tRNA synthetase [Erythrobacter sp. SD-21]
          Length = 671

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 143/455 (31%), Gaps = 53/455 (11%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      ++ L    + + + G   W P G +    + A +R + +  G 
Sbjct: 242 LTRLEEAAKRDHRKLGREMDLF--HLQEEAHGSVFWHPNGYRIWRELEAYMRRKMDGAGY 299

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADR------------------NDKAMIYGP 108
            E+  P L     W  SG +  Y + M  + D                   +   M   P
Sbjct: 300 REIKTPQLMDVRQWTASGHWGKYAENMFAVPDIVPDVDDSGAASAHPKVADDADWMAIKP 359

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTP 167
            +      +F+  I SYR+LP    ++    R+E      G+MR R+F   DA+ F  + 
Sbjct: 360 MNCPAHVLVFKQGITSYRDLPIRLGEMGCCHRNEPHGALHGLMRVRQFTQDDAHIFC-SE 418

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                           ++   G      +    P     S      A+            
Sbjct: 419 SQVVEEVRAFCKLAESVYKDFGFTFAI-KLALRPEKRLGSDADWDKAEQELRDAVEEAGM 477

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
           M+     E             +    A YA   + H   L D++    +V     +    
Sbjct: 478 MNEEFGWEE------------LPGEGAFYAPKLEWH---LTDAIGRTWQVGTIQGDRVLP 522

Query: 288 FYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
                     + A++ G DG+ H    +     G+      ++   + G+  +W      
Sbjct: 523 --------ERLDASYVGEDGEKHRPVMLHRAIFGSYERFIGILIEHYAGRMPVWLAPTQA 574

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
              +++          D  ++  A+L   G  V  D   E+I  +         P  ++V
Sbjct: 575 VVATIV------SDADDYAKEAVAKLEAAGIRVASDLRNEKINYKVREHSHAKVPHLLVV 628

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G++   +  V ++      ++ M LEE I      
Sbjct: 629 GNREAEEGTVAVRTLGQQHQKVMPLEEAIAMLKAE 663


>gi|114328278|ref|YP_745435.1| threonyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
 gi|122326764|sp|Q0BRP0|SYT_GRABC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114316452|gb|ABI62512.1| threonyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
          Length = 642

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 148/440 (33%), Gaps = 42/440 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      ++ L    I + + G   W   G +    +   +R  Q   G
Sbjct: 232 YLHQLEEAERRDHRRLGKEMDLF--HIQEEAVGSIFWHKKGWRLYRALENYMRRRQIEAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             E+  P L    LW +SG +D Y + M     +  +K +   P +      IFR  ++S
Sbjct: 290 YEEVRTPQLVDRSLWEDSGHWDKYREHMFIATVEDEEKTLALKPMNCPCHVQIFRHGLRS 349

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y+ LP    +     R E      G+MR R F   DA+ F +  + +K +          
Sbjct: 350 YKELPLRMAEFGACHRYEPSGALHGIMRVRSFTQDDAHIFCMPEQIAKET-ADFVAMLAS 408

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++  LG  S  ++    P       E                   D              
Sbjct: 409 VYRDLGFDSFRVKFADRPESRAGKDE-----------------DWDRAEHELREACRLAG 451

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               +     A Y    +     L D++  + +     ++              ++A + 
Sbjct: 452 VEYELNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVDYVLP--------ERLNAEYV 500

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG +   V +    +G+      ++   + G+  +W   V      ++          
Sbjct: 501 AEDGARRRPVMLHRAILGSFERFIGILIEQYAGRFPLWLAPVPVVVAPIV------SDAN 554

Query: 363 DACEKIYARLSKVGCD-VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               ++   L + G      D   E+I ++     L   P+ ++VG +     +V ++  
Sbjct: 555 AYAMEVVTALKRAGVTWAEADLRNEKINAKIREHSLAHVPVILVVGRREAEQRQVALRRL 614

Query: 422 LTGIREDMSLEEVINYASHR 441
            +  ++ M+L+E I+  +  
Sbjct: 615 GSQEQQVMALDEAISALATE 634


>gi|291295577|ref|YP_003506975.1| threonyl-tRNA synthetase [Meiothermus ruber DSM 1279]
 gi|290470536|gb|ADD27955.1| threonyl-tRNA synthetase [Meiothermus ruber DSM 1279]
          Length = 652

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 146/443 (32%), Gaps = 33/443 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y     +   RD       L L T +  +  KG+  WLP G      +   + +++   G
Sbjct: 241 YLWQQEEAKRRDHRRLGQALELFT-ISEEVGKGLPLWLPRGAFIRRQMEDYMYQKEQEHG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P + +A L+  SG    Y  +M    +   +     P +      I+++  KSY
Sbjct: 300 YHYVYTPHIANARLYYTSGHLPYYKDDMYAPIEIEGEEYYLKPMNCPHHHMIYKARPKSY 359

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +    +R EL     G+ R+R F   DA+ +    + ++  + ++   +  +
Sbjct: 360 RDLPLRLAEFGTVYRFELSGTLSGLTRARGFTQNDAHIYCSRAQVTEE-FIRVIQLFDEV 418

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G+     R                  +    +     D     I +     ++  +
Sbjct: 419 YKDFGISDYWFRLSLPDF------------ENNPEKFGEENDNWRDSIKAIRAALEETGA 466

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                      Y    DV    +   L + + ++   ++      FG          F  
Sbjct: 467 KYVEGIGEATFYGPKLDVQIRSV---LGKEETIATNQLDFIVPERFG--------LEFTN 515

Query: 305 ADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G+      +    +G+     A       G   +W             I        +
Sbjct: 516 EKGEKETPVVIHRAIMGSFDRFFAFYLEHTAGDFPLW------LSPIQAVIVPIADRHLE 569

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+ A + K    V  DD  E++ ++   A+L   PL ++VG K      V ++ R  
Sbjct: 570 YAQKVAAEMRKNRLRVEIDDRSERMNAKIRDAELQKIPLILVVGDKEAEAGTVNVRERHV 629

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
             +  +++  +I     R    +
Sbjct: 630 KEQRTLAVAALIEEMKARVEARK 652


>gi|323498007|ref|ZP_08103016.1| prolyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
 gi|323317052|gb|EGA70054.1| prolyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
          Length = 571

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 152/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  +G + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKDGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +       D+    E  
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAF-STESDYAANIEKA 236



 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 112/205 (54%), Gaps = 3/205 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I            D+ N    D  P  +      RGIEVGHIF  G  YS  M
Sbjct: 366 DDKHYFGINWGRDVELGQIEDLRNVVEGDPSPCGQGTIMLKRGIEVGHIFQLGKAYSEAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +    G DGK+  ++MG YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +    
Sbjct: 426 NCGVLGPDGKNVILEMGCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E
Sbjct: 486 SEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
            K+R +G +  +++ +++ +   + 
Sbjct: 546 YKNRRSGEKTAVAMTDIVEHVKAQL 570


>gi|320593705|gb|EFX06114.1| prolyl-tRNA synthetase [Grosmannia clavigera kw1407]
          Length = 495

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 144/473 (30%), Positives = 226/473 (47%), Gaps = 55/473 (11%)

Query: 2   RRSKYFLP----ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAII 57
           R +++++P     L++  ++ E  SH  ++R G   Q   G++  LPLG +  D + A++
Sbjct: 45  RLTQFWVPPPQVALKDAKQNEE--SHAKLVRAGFFRQAHSGVFHMLPLGLRVQDKIEALV 102

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
            +     GA  +++ ++ SA LW  SGR  S   E+ +  DR     +  PTHEE +T++
Sbjct: 103 DKHMRSIGASRVALSSITSAGLWERSGRLGSVKPELFQFEDRKQAKFLLAPTHEEEITEL 162

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               + SYR+LP   YQI  K+RDE+RPR+G++RSREF+MKD Y+FD T E +  +Y ++
Sbjct: 163 VAQSVHSYRDLPLRLYQITRKYRDEMRPRYGILRSREFIMKDLYTFDTTVEAALATYEQV 222

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  IF  L +     RA SG +GGDLSHE+ + A  GE  V   +    F   +E T
Sbjct: 223 RAAYAAIFAELRVPVRVARASSGDMGGDLSHEYHLAASLGEDDVASCRAC-GFAGNTEIT 281

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK----RVSARGIEVGHIFYFGTK 293
                                  D    +  D  P+          R IE+GH FY GT+
Sbjct: 282 HIG-------------------PDSRPARSGDDCPDCGAAGSLQVERAIELGHTFYLGTR 322

Query: 294 YSLPMSATFKGADGKD----HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           YS P++   +G             MG YGIG  R++ AV +   D  G+ WP ++APF+ 
Sbjct: 323 YSEPLNVRVQGDQNTPATSTITPLMGCYGIGISRILGAVADHLADPTGLRWPRAIAPFE- 381

Query: 350 SLINIKAHDQVCRDACEKIYARLSKV---GCDVFWDDMG-EQIGSQFAVADLLGFPLQVI 405
            +  + A         E++Y  L+       D   DD     +  +   ADL G+P+ VI
Sbjct: 382 -VAVVAAGGSPLAQVAERVYDELTANTETRLDALLDDRPAASLPYKLKDADLTGYPVVVI 440

Query: 406 VG---SKFVS------------DSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           VG    +  +            D   E++ R  G+R+D+ L E+  + S   +
Sbjct: 441 VGAAWRRSTATATDSSAPNISLDGLCEVQCRQLGLRQDVPLSELKTFVSGLLA 493


>gi|260775255|ref|ZP_05884152.1| prolyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608436|gb|EEX34601.1| prolyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 571

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 112/236 (47%), Positives = 152/236 (64%), Gaps = 1/236 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDIDKEGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +       D+    E 
Sbjct: 181 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAF-STESDYAANIEK 235



 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 112/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           +   D+ N    D  P  K      RGIEVGHIF  G  YS  M+    G DGK+  ++M
Sbjct: 382 SQVEDLRNVVEGDPSPCGKGTIALKRGIEVGHIFQLGNVYSQAMNCGVLGPDGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +     +  ++A EK+YA L+
Sbjct: 442 GCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHKSEEVKEAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G +V +DD  E+ G  F+  +L+G P  +++G + + +   E K+R TG +  +++ +
Sbjct: 502 AMGIEVLFDDRKERPGVMFSDMELIGIPHTIVIGDRSMKEGNFEYKNRRTGDKTPVAMAD 561

Query: 434 VINYASHRFS 443
           ++ +   + +
Sbjct: 562 IVEHIKAQLA 571


>gi|255030222|ref|ZP_05302173.1| prolyl-tRNA synthetase [Listeria monocytogenes LO28]
          Length = 505

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 123/294 (41%), Positives = 166/294 (56%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S    D+   +E     
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSD-ASDYAANTEMAPVL 239

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                   L   +E+   P   +       L   + +  +     ++   I   
Sbjct: 240 YMEKKSHELEKDLEKVATPDQKSITDIVGFLEVPIEKTMKSMLYQVDDEVIMVL 293



 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 383 DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G +W   ++PF + LI +    +      E +Y  L   G  
Sbjct: 443 IGVSRILSAIAEQSNDENGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYTSLQDAGFS 502

Query: 379 VFW 381
           V  
Sbjct: 503 VLI 505


>gi|257064333|ref|YP_003144005.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Slackia
           heliotrinireducens DSM 20476]
 gi|256791986|gb|ACV22656.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Slackia
           heliotrinireducens DSM 20476]
          Length = 586

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 137/438 (31%), Gaps = 41/438 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      ++ L   M      G   WLP G K  + +     +   +    E+ 
Sbjct: 188 EEAKKRDHRKIGQEMELF--MFADEGPGFPFWLPNGTKLKNALIEYWHDMMAKYNYDEVE 245

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + S  LW  SG +D Y + M      +++     P +      I++S  +SYR+LP 
Sbjct: 246 TPQILSRKLWETSGHWDHYKENMYT-TVIDEEDYAVKPMNCPGACLIYKSRPRSYRDLPL 304

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +  L  R EL+    G+ R R F   D + +    + S              +++  
Sbjct: 305 KLAEAGLDHRHELKGALHGLFRVRAFTQDDGHIYVTPEQISDIVLETAR--LFDEYYQQF 362

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P     S E                   +          + +     + 
Sbjct: 363 GFEYKVELSTRPEDSMGSDE-----------------DWERAENGLREALEKMGKDYILN 405

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E   A Y    D H   L D L    +     ++    F     + L   A       K 
Sbjct: 406 EGDGAFYGPKIDFH---LKDCLGRTWQCGTIQLD----FQLPQNFELEYMAA---DGTKK 455

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             + +   G G+      ++   + GK   W   +    + +       +  RD   ++ 
Sbjct: 456 RPIMIHRAGFGSFERFIGMLTEQYAGKFPTWLAPLQVKILPV------SEKTRDYALEVG 509

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVA-DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             L   G     D   E+IG +   A      P  +I+G +      + ++ R +     
Sbjct: 510 QVLRDAGVRAVVDTRDEKIGYKIREARSTDRVPYMLILGEQERDGKYISVRDR-SNETVA 568

Query: 429 MSLEEVINYASHRFSNNR 446
             L+E I   +   +  R
Sbjct: 569 RQLDEFIADITAEIAERR 586


>gi|224539835|ref|ZP_03680374.1| hypothetical protein BACCELL_04745 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518545|gb|EEF87650.1| hypothetical protein BACCELL_04745 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 519

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/446 (16%), Positives = 145/446 (32%), Gaps = 40/446 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 103 EYLAMLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRLRLQEFLRRIQARY 161

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++  
Sbjct: 162 DYQEVITPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 221

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 222 RSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDII 280

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +   ++  +                  D    + +   D           +  +
Sbjct: 281 SIVFRSMDFANVEAQISLR--------------DKVNREKYIGSDENWERAEQSIIEACE 326

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L++ +E    A Y    D     + D++    ++    ++                 
Sbjct: 327 EKGLSARIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFEL 375

Query: 301 TFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            + GAD + H   M          R VA +IE +     +                    
Sbjct: 376 EYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLWLTPEQVAILPI-------S 428

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D  +++   L +       D+  E+IG +    +L   P  +IVG K   + +V +
Sbjct: 429 EKFNDYAQEVKKFLKQYDIRAIVDERNEKIGRKIRDNELKRIPYMLIVGEKEAENREVSV 488

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           + +  G +  M  EE     +    N
Sbjct: 489 RKQGEGDKGTMKFEEFAKILNEEVQN 514


>gi|172087674|ref|YP_204065.3| prolyl-tRNA synthetase [Vibrio fischeri ES114]
 gi|59479390|gb|AAW85177.1| prolyl-tRNA synthetase [Vibrio fischeri ES114]
          Length = 575

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 114/237 (48%), Positives = 153/237 (64%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 5   MRTSKYLLSTLKETPNDAEVVSHQLMLRAGMIRRLASGLYTWLPTGLRVLRKVENIVRQE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 65  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 125 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFCMMDAYSFDINKEGLQKSYDAMHDA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y + F R+GL+  P+ A+SG IGG  S EF VLA++GE  +       D+    E  
Sbjct: 185 YCKAFDRMGLEYRPVLADSGAIGGSGSQEFHVLAESGEDLIAF-STESDYAANIEKA 240



 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 62/190 (32%), Positives = 106/190 (55%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +      RGIEVGHIF  GT YS  M+     A+GK+  ++M
Sbjct: 386 GQVEDLRNVVEGDPSPCGKGTLQLKRGIEVGHIFQLGTAYSEAMNCGVLDANGKNVILEM 445

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVA+ IE ++D  GI+WP+++APF ++++ +     +  ++A EK+YA L+
Sbjct: 446 GCYGIGVSRVVASAIEQNNDEYGIVWPEAIAPFTVAIVPMNMHKSERVKEAAEKLYAELT 505

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G +V +DD  E+ G  F   +L+G P  +++G + + +   E K+R    +E + +  
Sbjct: 506 AMGIEVLFDDRKERPGVMFKDIELIGIPHTIVIGDRSMDEGHFEYKNRRANTKEAVEMAN 565

Query: 434 VINYASHRFS 443
           ++ +   + S
Sbjct: 566 IVEHIKAQLS 575


>gi|254229498|ref|ZP_04922912.1| prolyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262393498|ref|YP_003285352.1| prolyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|151937963|gb|EDN56807.1| prolyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262337092|gb|ACY50887.1| prolyl-tRNA synthetase [Vibrio sp. Ex25]
          Length = 571

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 112/236 (47%), Positives = 151/236 (63%), Gaps = 1/236 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSNYLLSTLKETPNDAEVVSHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E  +P +Q  +LW E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+
Sbjct: 61  IDNAGAVETLMPVVQPFELWEETGRSEKMGPELLRFTDRHVRPFVLSPTAEEVITSLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMRSREF M DAYSFD+  +G + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRSREFSMMDAYSFDIDKDGLQKSYDAMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           Y + F R+GL   P+ A+SG IGG  S EF VLA++GE  +       D+    E 
Sbjct: 181 YCKAFDRMGLDYRPVLADSGAIGGSGSQEFHVLAESGE-DIIAFSTESDYAANIEK 235



 Score =  173 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPM 298
           D      I     A      D+ N    D  P  K +    RGIEVGHIF  G  YS  M
Sbjct: 366 DGKHYFGINWGRDAELGQVEDLRNVVEGDPSPCGKGIIQLKRGIEVGHIFQLGNAYSAAM 425

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-H 357
           +    G DGK+  ++MG YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +    
Sbjct: 426 NCGVLGPDGKNVILEMGCYGIGITRVVAAAIEQNHDKYGIIWPDAIAPFQVAIVPMNMHK 485

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +  ++A EK+YA L+ +G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E
Sbjct: 486 SEEVKEAAEKLYAELTAMGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMKEGNFE 545

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
            K+R TG +  +++ ++I +   +  
Sbjct: 546 YKNRATGEKTPVAMTDIIEHVKAQLK 571


>gi|297205704|ref|ZP_06923099.1| threonine--tRNA ligase [Lactobacillus jensenii JV-V16]
 gi|297148830|gb|EFH29128.1| threonine--tRNA ligase [Lactobacillus jensenii JV-V16]
          Length = 656

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 153/434 (35%), Gaps = 36/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      +   I +++   G   +  P L
Sbjct: 251 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVIERYIIDKELADGYQHVYTPVL 308

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y ++M    D  D  M    P +      +++ HI+SYR LP    
Sbjct: 309 MNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSYRELPIRIA 368

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++    +  
Sbjct: 369 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALEQVQEE-FAKILKLIMDVYKDFDITD 427

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 428 YYFRLS-------------YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGE 474

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      ++ G DG++H  
Sbjct: 475 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERFD----LSYVGQDGEEHRP 523

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G M    A +   + G    W          +  I  +     +  +K+   
Sbjct: 524 VMIHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PEQVEIIPVNLDAHGEYAKKVRDE 578

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G     D   E++G +   +     P  +++G   ++ + V ++   T  +E MSL
Sbjct: 579 LLKHGFRAEVDFRNEKMGYKIRESQTQKVPYTLVLGDDEMNSNAVNVRPYGTEKQESMSL 638

Query: 432 EEVINYASHRFSNN 445
           ++ I+       + 
Sbjct: 639 DKFIDELQADVDSY 652


>gi|229117305|ref|ZP_04246683.1| Prolyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228666205|gb|EEL21669.1| Prolyl-tRNA synthetase [Bacillus cereus Rock1-3]
          Length = 566

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 121/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    ++    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SNYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQALI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  + IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGKNIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|154490252|ref|ZP_02030513.1| hypothetical protein PARMER_00484 [Parabacteroides merdae ATCC
           43184]
 gi|154089144|gb|EDN88188.1| hypothetical protein PARMER_00484 [Parabacteroides merdae ATCC
           43184]
          Length = 651

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 151/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L T        G+  WLP G +    +   ++  Q + 
Sbjct: 230 EYLALMEEAKKRDHRKIGKELELFT-FSTAVGAGLPLWLPRGTQLRLKLEDFLKRIQKKY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G  ++  P +    L+V SG Y  YGK+  +     +  +  +  P +     +IF+S  
Sbjct: 289 GYQQVMTPHIGGKQLYVTSGHYAKYGKDSFQPIHTPQEGEEFLLKPMNCPHHCEIFKSFP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP  F +    +R E      G+ R R F   DA+ F    +     + K+    
Sbjct: 349 RSYKDLPLRFAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFCRPDQLKDE-FLKVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             IF  L  ++   +                  D      +   +       S   +   
Sbjct: 408 FIIFKALDFENFEAQISLR--------------DKVNRDKYIGSEENWEKAESAIIEACQ 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLKAKIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFEL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G D K H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYTGEDNKKHRPVMIHRAPFGSMERFVAVLIEHTGGKFPLW------LTPDQVAILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L      V  DD  E+IG +    +L   P  +IVG K   +++V ++
Sbjct: 557 KFNDYAYEVKRQLEAEDLSVLVDDRNEKIGRKIRDTELKRIPYMLIVGEKEAENNEVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M +            +
Sbjct: 617 KQGEGDKGSMKITTFAALLKGEVED 641


>gi|78485419|ref|YP_391344.1| prolyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
 gi|114152273|sp|Q31GQ3|SYP_THICR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78363705|gb|ABB41670.1| prolyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
          Length = 572

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 125/282 (44%), Positives = 174/282 (61%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   L   +E P DA + SH+LMLR G+I   + G+Y+WLPLG + L  V AIIR+E
Sbjct: 1   MKTSSLLLATTRETPADAVVISHQLMLRAGIIRPLAGGLYNWLPLGVRVLRKVEAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+  A E+ +P +Q  +LW ESGR ++YG E+LR  DR+ +    GPTHEE++TD+ R 
Sbjct: 61  MNKAQAQELLMPVVQPMELWEESGRAEAYGPELLRFKDRHQREFALGPTHEEIITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP  FYQIQ KFRDE+RPRFGVMRSREF+MKDAYSF +  +  + +Y  M+ +
Sbjct: 121 EIRSYKQLPANFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHMDKDSLQKTYEDMYDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P++A++G IGG+ SHEF VLAD+GE  +  S D  D+    E  +  
Sbjct: 181 YNRIFTRLGLDFRPVQADTGSIGGEGSHEFHVLADSGEDDIAFSSD-SDYAANIELAEAL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                 +   +        +    E + D L   K+  A+ +
Sbjct: 240 APRGERAAATEELTKVETPNKHSIEDVCDFLQLKKKKVAKTL 281



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 104/190 (54%), Gaps = 3/190 (1%)

Query: 259 TSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D     + K    RGIEVGHIF  G KYS  ++AT    + +   ++MG 
Sbjct: 383 VADIRNVVKGDPSPCGKGKIEIRRGIEVGHIFQLGNKYSEALNATVLNENSRAQILEMGC 442

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKV 375
           YGIG  RVVAA IE ++D KGIIWP+++APF++ ++ ++        +A   +Y  L+  
Sbjct: 443 YGIGVTRVVAAAIEQNYDDKGIIWPEAIAPFQVCIVPMQMHKSPRVEEAVMTLYNELTAK 502

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G  F   +L+G P ++++G + +   ++E KHR     +D+   E +
Sbjct: 503 GIEVLLDDRKERPGVMFNDMELIGIPHRIVIGERGLDKGEIEYKHRRDEKSQDIPEAEFM 562

Query: 436 NYASHRFSNN 445
            +   + S N
Sbjct: 563 EFLLGKLSGN 572


>gi|114767278|ref|ZP_01446118.1| threonyl-tRNA synthetase [Pelagibaca bermudensis HTCC2601]
 gi|114540584|gb|EAU43657.1| threonyl-tRNA synthetase [Roseovarius sp. HTCC2601]
          Length = 649

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 144/440 (32%), Gaps = 44/440 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      ++ L    +   + G   W P G     ++   +R +Q+R G
Sbjct: 236 YLNFLEEAAKRDHRKLGREMDLF--HLQPEAPGQIFWHPNGWTIYTSLQDYMRRQQHRDG 293

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-----GPTHEEVMTDIFRS 120
            +E++ P +    LW  SG +D+Y + M  +    + A         P +      IF S
Sbjct: 294 YVEVNTPQVVDRKLWEASGHWDNYQENMFIVEVDEEHAREKSINALKPMNCPCHVQIFNS 353

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R E      G+MR R F   DA+ F    +    +  K   
Sbjct: 354 GLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIFCTDDQIEAET-KKFIE 412

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+  LG  +  ++  + P     S E                   D    +     
Sbjct: 413 FLAGIYADLGFHNWTIKLSTRPEKRIGSEE-----------------SWDRVEAALGDAC 455

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   + E   A Y    +     L D++    +     ++                
Sbjct: 456 KAAGYGFELQEGEGAFYGPKLEF---TLTDAIGREWQCGTLQVDPNLPDRLD-------- 504

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A++ G DG+ H    +    +G+      ++   H GK   W         S+       
Sbjct: 505 ASYIGQDGEKHRPVMLHRAVLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIT------ 558

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   ++ A L   G     D   E+I  +     +   P+ + VG + V +  V +
Sbjct: 559 SEADDYVHEVVAELKAAGVRAEADIRNEKINYKVREHSVGKVPVILAVGHREVEERTVTV 618

Query: 419 KHRLTGIREDMSLEEVINYA 438
           +       +  +L E+    
Sbjct: 619 RRLGEKQTKVAALAEITQEL 638


>gi|309378830|emb|CBX22535.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 570

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 120/273 (43%), Positives = 170/273 (62%), Gaps = 5/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +  +ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEVALASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+D+    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDRDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y  M+ +
Sbjct: 121 EVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHTDYASLQTTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E     
Sbjct: 181 YCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIELAPTL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            +    +  +             N K  DSL +
Sbjct: 240 PLKGERAAAQAELV----KVHTPNVKTIDSLVD 268



 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              A      D+ N    D  P+   +   ARGIEVGH+F    KY+  M+ +F   +GK
Sbjct: 374 GRDAAEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRDKYTKAMNVSFLDNNGK 433

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK 367
              ++MG YGIG  RVVAA IE ++D KGIIW  ++APF++ ++ +        R+A +K
Sbjct: 434 SQIMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADK 493

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           IYA L   G DV  DD  E+ G     ++LLG P ++++G + + +  VE   R     +
Sbjct: 494 IYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRENEAQ 553

Query: 428 DMSLEEVINYASHRFS 443
            +++ E++   +   +
Sbjct: 554 AVAIGEIVARVTASLN 569


>gi|118586378|ref|ZP_01543828.1| threonyl-tRNA synthetase 1 [Oenococcus oeni ATCC BAA-1163]
 gi|118433195|gb|EAV39911.1| threonyl-tRNA synthetase 1 [Oenococcus oeni ATCC BAA-1163]
          Length = 663

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 157/438 (35%), Gaps = 30/438 (6%)

Query: 11  LQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           L+E   RD      ++ L      +   G+  WLP G      +   + E++ + G + +
Sbjct: 240 LEERKERDHRTIGKQMELF-FTNPEIGAGLPVWLPNGAAIRRTIEDYLVEKERQNGYMNV 298

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNL 128
             P + + DL+  SG +D Y  +M      ND   +   P +     +IF    +SYR+L
Sbjct: 299 YTPVVSNLDLYKRSGHWDHYRDDMFPAMTANDGEQLELRPMNCPSHIEIFEHEPRSYRDL 358

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           P+   +     R E       +     +  +     + PE  +  +  +      ++H  
Sbjct: 359 PYRIAEFGQMHRWEKSGALTGLSRVREMTLNDGHTVVAPEQVEPEFKGILQLIRDVYHDF 418

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G               D              + +      +    +     DD+      
Sbjct: 419 GFTDQ-----------DYRFRLSYRDPKNTKKYYDDDAMWEHAQAALKRAMDDMGLDYFE 467

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    D+   +   +L   + +S   ++    F    ++ +     + G DGK
Sbjct: 468 AEGEAAFYGPKLDI---QFKTALGNEETMSTIQLD----FLLPERFDM----KYTGEDGK 516

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           DH   +     G +  +   +    +     +P  +AP +  +I +        D    I
Sbjct: 517 DHRPVLIHR--GVVGTMERFVAFLIEKYKGQFPTWLAPVQAVVIPVNYG--AHGDYARNI 572

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADL-LGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           Y++L K G  +  D+  E++G     A + L  P  ++VG + + D+ V ++ R +   +
Sbjct: 573 YSKLMKDGRRIKLDNRDEKLGYLIRDAQVNLKTPYILVVGDQELRDNSVTVRFRGSDQTK 632

Query: 428 DMSLEEVINYASHRFSNN 445
           +M ++E     +   +N 
Sbjct: 633 EMKIDEFEEMINDDVANY 650


>gi|16803359|ref|NP_464844.1| prolyl-tRNA synthetase [Listeria monocytogenes EGD-e]
 gi|224501738|ref|ZP_03670045.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL R2-561]
 gi|81849855|sp|Q8Y7G2|SYP_LISMO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|16410735|emb|CAC99397.1| prolyl-tRNA synthetase [Listeria monocytogenes EGD-e]
          Length = 568

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 123/294 (41%), Positives = 166/294 (56%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S    D+   +E     
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSD-ASDYAANTEMAPVL 239

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                   L   +E+   P   +       L   + +  +     ++   I   
Sbjct: 240 YMEKKSHELEKDLEKVATPDQKSITDIVGFLEVPIEKTMKSMLYQVDDEVIMVL 293



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 383 DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G +W   ++PF + LI +    +      E +Y  L   G  
Sbjct: 443 IGVSRILSAIAEQSNDENGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYTSLQDAGFS 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N  
Sbjct: 503 VLIDDRAERAGVKFADADLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTL 561


>gi|42520791|ref|NP_966706.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|73919843|sp|Q73GH6|SYT_WOLPM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|42410531|gb|AAS14640.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 633

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 155/442 (35%), Gaps = 40/442 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
             +L  L+E   RD    +  + L    I + + G   W   G    + + + IR++   
Sbjct: 227 NAYLECLKEAEKRDHRKIAKDMDLF--HIQEEAVGQVFWHEQGYILYNVLESYIRKKLIN 284

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L S +LW  SG +D + + M  + +  +K +   P +      IF SH +
Sbjct: 285 NGYFEVKTPILVSKELWERSGHWDKFRENMFIVDESENKKLAIKPMNCPCHVQIFNSHTR 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F +  + +  +         
Sbjct: 345 SYRDLPIRMAEFGTCHRNESSGSLHGLMRVRGFTQDDAHIFCMEEQVNSETIKF-CDLLK 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++  LG   I ++    P     + E                   D    +      + 
Sbjct: 404 EVYSELGFNEISVKFSDRPDIRAGNDE-----------------VWDRAEKALLEAVKEA 446

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    +     L D++  N +     ++       G        A +
Sbjct: 447 GLSYKLNPGEGAFYGPKLEF---VLKDAIGRNWQCGTLQVDFILPERLG--------AFY 495

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG  H+   +    +G       ++  ++ GK  +W        +++ N        
Sbjct: 496 IGADGHKHHPVMLHRAILGTFERFIGILIENYAGKFPVWLAPTQLAILTITN------EA 549

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                +I   L + G  V  D   E+I  +  +      P+  IVG   V+   V +++ 
Sbjct: 550 DGYATEISNILKEQGVRVKTDLTNEKISYKIRLHSSNKVPILWIVGKNEVTSKTVSVRNL 609

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            +  +E  SLE+         +
Sbjct: 610 GSERQESFSLEKANESLLKSIN 631


>gi|75760863|ref|ZP_00740877.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218898971|ref|YP_002447382.1| prolyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228902322|ref|ZP_04066479.1| Prolyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
 gi|228966764|ref|ZP_04127808.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|226731427|sp|B7IUH7|SYP_BACC2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|74491647|gb|EAO54849.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218543850|gb|ACK96244.1| prolyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228792863|gb|EEM40421.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228857291|gb|EEN01794.1| Prolyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
          Length = 566

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 123/267 (46%), Positives = 166/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E      A       E++
Sbjct: 240 ATYTKSDEAEMALEKVATPDQKAIEEV 266



 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EKGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|291566398|dbj|BAI88670.1| prolyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 601

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 124/276 (44%), Positives = 164/276 (59%), Gaps = 7/276 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   G+Y++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPTEAEIPSHKLLLRAGYIRRIGSGVYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P +Q ++LW ESGR+D+Y K    M  L DR D+++  GPTHEEV+T +
Sbjct: 61  MNATGAQECLLPQVQPSELWKESGRWDTYTKAEGIMFSLKDRRDRSLALGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF  + E  K +Y  M
Sbjct: 121 ARDMIRSYQQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTSEESLKQTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  I  R GL    + A+SG IGG  S EF+VLAD GE +V  + D   +    E  
Sbjct: 181 DRAYRNILRRCGLDFCAVEADSGAIGGSGSQEFMVLADAGEDEVLYTPDG-KYAANVEKA 239

Query: 238 ---DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                D + S  +  E+   P  AT     E L  S
Sbjct: 240 VSLPPDAVASGFTTYEKLETPNTATIATLCEFLKCS 275



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 61/172 (35%), Positives = 96/172 (55%), Gaps = 1/172 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     SARGIEVGHIF  GTKYS  M AT+    G+D  + MG YG+G  R+  A +E 
Sbjct: 428 PSQTLESARGIEVGHIFQLGTKYSQAMGATYTSETGEDLPLVMGCYGVGVSRLAQAAVEQ 487

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GIIWP ++AP+   +      D       +++Y++L++ G +   DD  E+ G +
Sbjct: 488 SYDKDGIIWPVAIAPYHAIITVPNVSDNQQMAIAQQLYSQLNQAGVETLLDDRNERAGVK 547

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F  ADL+G P +++ G + +   KVE+  R      ++ +E+V++    + S
Sbjct: 548 FKDADLVGIPYRIVTG-RAIKSGKVELVQRADHESSEVPIEQVVSLLQQKIS 598


>gi|126729010|ref|ZP_01744825.1| threonyl-tRNA synthetase [Sagittula stellata E-37]
 gi|126710940|gb|EBA09991.1| threonyl-tRNA synthetase [Sagittula stellata E-37]
          Length = 660

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/455 (16%), Positives = 143/455 (31%), Gaps = 55/455 (12%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             K+   + +   RD      ++ L    + + + G   W P G      +   +R +Q 
Sbjct: 234 LKKHLNMLEEAAKRDHRKLGREMDLF--HMQEEAPGQVFWHPNGWTIYTTLQEYMRRKQR 291

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIY-------------- 106
             G  E++ P +    LW  SG ++ Y   M  +   +  D                   
Sbjct: 292 AGGYQEINTPQVVDRKLWEASGHWEKYQHHMFIVEVDESRDGEHDDATAKNKEQTRINAL 351

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
            P +      +F   +KSYR+LP    +     R E      G+MR R F   DA+ F  
Sbjct: 352 KPMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCARYEPSGALHGIMRVRGFTQDDAHIFC- 410

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           T +  +    +       I+  LG  +  ++  + P     + E                
Sbjct: 411 TEDQIEAECARFIEFLADIYRELGFPTFEIKFATRPEKRVGTEE---------------- 454

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
              D+   +            ++     A Y    D +   L D++    +     ++  
Sbjct: 455 -SWDYVENALEEAIRKTGRTYTLEPGDGAFYGPKLDFY---LTDAIGRVWQCGTFQVDPN 510

Query: 286 HIFYFGTKYSLPMSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                G        A++   +G       +    +G+      ++   H GK   W    
Sbjct: 511 LPERLG--------ASYIAPNGDKTRPFMLHRATLGSFERFVGILIEEHAGKLPFWLAPR 562

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
                S+           D  +++   L K G     D   E+I  +     +   P+ +
Sbjct: 563 QVVVASIT------SEADDYVQEVTELLRKAGVRAEADIRNEKINYKVREHSVGKVPVIL 616

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +G + V +  V ++          SL ++++  S
Sbjct: 617 AIGHREVEERTVTVRRLGEKQTSVTSLTDIVSELS 651


>gi|229162755|ref|ZP_04290712.1| Prolyl-tRNA synthetase [Bacillus cereus R309803]
 gi|228620637|gb|EEK77506.1| Prolyl-tRNA synthetase [Bacillus cereus R309803]
          Length = 566

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 121/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    ++    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SNYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 108/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY+ L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDESGLVWPKAVAPFHVHVIPVNMKSDAQREMGESIYSSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|229098288|ref|ZP_04229235.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|228685186|gb|EEL39117.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-29]
          Length = 566

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 121/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    ++    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SNYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQALI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|262165127|ref|ZP_06032864.1| prolyl-tRNA synthetase [Vibrio mimicus VM223]
 gi|262172111|ref|ZP_06039789.1| prolyl-tRNA synthetase [Vibrio mimicus MB-451]
 gi|261893187|gb|EEY39173.1| prolyl-tRNA synthetase [Vibrio mimicus MB-451]
 gi|262024843|gb|EEY43511.1| prolyl-tRNA synthetase [Vibrio mimicus VM223]
          Length = 571

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 123/290 (42%), Positives = 168/290 (57%), Gaps = 20/290 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLQKSYDAMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN---- 236
           Y + F R+GL   P+ A+SG IGG+ S EF VLA++GE  +       D+    E     
Sbjct: 181 YCKAFDRMGLDYRPVLADSGAIGGNGSQEFHVLAESGEDLIVF-STESDYAANIEKAEAL 239

Query: 237 ---------------TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                           D  +  ++  +VEQ   P   T      K  D++
Sbjct: 240 APAAEAAAPTQEMTLVDTPNAKTIAELVEQHGLPIEKTVKTLFVKASDAI 289



 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/190 (36%), Positives = 112/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  GT YS  M+     ++GK+  ++M
Sbjct: 382 GKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSAKMNCGVLDSNGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +     +  ++A EK+YA L+
Sbjct: 442 GCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHKSERVQEAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F+  +L+G P  VI+G + + +   E K+R  G +E +++E 
Sbjct: 502 AAGIEVLFDDRKERPGVMFSDMELIGVPHTVIIGDRSMDEGHFEYKNRRNGEKEAVAMES 561

Query: 434 VINYASHRFS 443
           +I++   + +
Sbjct: 562 IIDFIQAKLA 571


>gi|116872750|ref|YP_849531.1| prolyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123463747|sp|A0AIC0|SYP_LISW6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116741628|emb|CAK20752.1| prolyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 568

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 123/279 (44%), Positives = 165/279 (59%), Gaps = 3/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  + AIIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLLPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     Y  M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYKLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-- 238
           Y  IF R GL+   + A+SG IGG+ S EF+ L++ GE  +  S    D+   +E     
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSEIGEDTIAYSD-ASDYAANTEMAPVL 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           + +  S     E      A    + +   F  +P  K +
Sbjct: 240 YMEKKSHELEKELEKVATANQKFIADIVEFLEVPIEKTI 278



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   +  D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 383 DLRMIQAGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G++W   ++PF + LI +    +      E +Y  L K G  
Sbjct: 443 IGVSRILSAIAEQSNDENGLVWDKQISPFDLHLIPVNMKSEEQVAFAESLYDSLQKAGFS 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N  
Sbjct: 503 VLIDDRAERAGVKFADADLIGLPIRITVGKK-AAEGIVEVKIRKTGEMIEVRQDELLNTL 561


>gi|325290366|ref|YP_004266547.1| Prolyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965767|gb|ADY56546.1| Prolyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
          Length = 571

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 119/270 (44%), Positives = 159/270 (58%), Gaps = 10/270 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+   P L+E P +AEI SH+LMLR G I + + G+Y++LPL  + L  +  IIREE
Sbjct: 1   MRVSQLLNPTLREVPAEAEIVSHQLMLRAGFIRKVAGGVYTYLPLALRVLRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +P +Q ++LW E+ R+D YG EM RL DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MNAKGGQELLLPIVQPSELWKETKRWDIYGPEMFRLKDRHDREFCLGPTHEEVITDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE RPRFG+MR REF+MKD YSFD   E    SY KM+ +
Sbjct: 121 EVRSYKQLPLLLYQIQNKYRDERRPRFGLMRGREFIMKDLYSFDRDAEAGAESYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTD 238
           Y +IF R GL   P+ A+     G   +HEF+VLAD+GE   VFC        +    + 
Sbjct: 181 YTKIFSRCGLTFRPVEADAGAIGGTGGTHEFMVLADSGEAAVVFCPACAYAANVEKAESQ 240

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
             DI           AP     +VH   + 
Sbjct: 241 PADIGG--------NAPVEGKKEVHTPTVK 262



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 102/193 (52%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +   Y     +                ARGIEVG +F  GTKYS  + AT+    G++ 
Sbjct: 377 DFKPDYVLDLRMVEAGEPCPCCGVPLQEARGIEVGQVFNLGTKYSEALKATYLDEKGQEK 436

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              MG YGIG  R +AA IE +HD  G+IWP  +APF+  ++ +    +   +  EK+YA
Sbjct: 437 LCYMGCYGIGVSRTMAAAIEQNHDTNGVIWPIPIAPFECIIVPVSLKSEAVVETSEKLYA 496

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           ++ + G +V  DD  E+ G +F  ADL+G+PL++ +G K +++ KVE+  R TG  E + 
Sbjct: 497 QMLEAGIEVIIDDRDERPGVKFKDADLIGYPLRINIGEKSLAEGKVELFRRKTGQMELLD 556

Query: 431 LEEVINYASHRFS 443
           +E+V+        
Sbjct: 557 IEQVMTTVMSMIK 569


>gi|157145208|ref|YP_001452527.1| hypothetical protein CKO_00941 [Citrobacter koseri ATCC BAA-895]
 gi|157082413|gb|ABV12091.1| hypothetical protein CKO_00941 [Citrobacter koseri ATCC BAA-895]
          Length = 652

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 140/436 (32%), Gaps = 39/436 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +     +   RD      +L L       ++ G   W P G     ++ A +R      G
Sbjct: 243 WLEKTAEAEKRDHRKLGRELDLF--HFQDNAPGAVFWHPRGWTIFQSLIAYMRSRHEVAG 300

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E++ P +    LW  SG +D+Y   M      + +     P +      +F+  IKSY
Sbjct: 301 YVEVNTPDVMDRSLWEISGHWDNYRDHMFTTQTEDGRNFALKPMNCPGAVSLFKYGIKSY 360

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G++R R F   DA+ F    +        +    L I
Sbjct: 361 RDLPVRLSEFGKVHRYEPSGSLHGLLRVRHFTQDDAHIFCTLQQVEGEC-KSILQLVLDI 419

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G + + ++  + P                      S    D    + +   +    
Sbjct: 420 YKQFGFEEVAIKLSTRPEKR-----------------MGSDADWDRLENALSASLEAQGL 462

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             S+     A Y    +     L D++  + +     +++                 +  
Sbjct: 463 QWSVNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVDMNLP--------ERFDIGYIA 511

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +     G++     ++    +      P  ++P +  ++ I         
Sbjct: 512 EDGSTKRPVMLHRALFGSLERFTGILL---EHYVGKLPAWLSPVQAVVMTITDK---QHH 565

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++   L K G     D   E+IG       L   P  +IVG    + ++V ++ R  
Sbjct: 566 YAEQVLKALRKKGLRCEADLRNEKIGFIIREQTLARIPFLLIVGDAEENAARVTVRDRTG 625

Query: 424 GIREDMSLEEVINYAS 439
                + L E  +   
Sbjct: 626 RCMGTLLLNEAADAIK 641


>gi|186680962|ref|YP_001864158.1| prolyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
 gi|226701314|sp|B2J707|SYP_NOSP7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|186463414|gb|ACC79215.1| prolyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
          Length = 604

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 116/240 (48%), Positives = 151/240 (62%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL+LR G I +   G+Y++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLRDDPADAEIPSHKLLLRAGYIRRIGSGLYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ ADLW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNATGAQECLLPQLQPADLWKESGRWDTYTKAEGIMFSLIDRREQQLGLGPTHEEVITAI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF       K +Y  M
Sbjct: 121 ARDMIRSYRQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTDEASLKETYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           + +Y  I  R GL    + A+SG IGG  S EF++LA+ GE +V  ++D   +    E  
Sbjct: 181 YKAYSNILRRSGLAFRAVEADSGAIGGSGSTEFMILAEAGEDEVLYTEDG-KYAANVEKA 239



 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 63/198 (31%), Positives = 103/198 (52%), Gaps = 3/198 (1%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSL--PENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +  EQ+  P        +     ++  PE    SARGIE GHIF  GTKYS  M AT+  
Sbjct: 400 NWDEQFKLPERVVDIRKSRPGDRAIHNPEQTLQSARGIEAGHIFQLGTKYSQAMGATYTN 459

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G++  + MG +G+G  R+  A +E S+D  GIIWP ++AP+   +      D    + 
Sbjct: 460 EQGEEKPLLMGCFGVGVSRLAQAAVEQSYDNDGIIWPVAIAPYHAIVTIPNIKDAQQVEV 519

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+Y  L++ G +   DD  E+ G +F  ADL+G P +++ G + +++ KVE+  R T 
Sbjct: 520 AQKLYTELNQAGIETLLDDRDERAGVKFKDADLIGIPYRIVTG-RAIANGKVEVVERATR 578

Query: 425 IREDMSLEEVINYASHRF 442
             +++ ++EV        
Sbjct: 579 KSQEIVIDEVTTTLQQWI 596


>gi|302527884|ref|ZP_07280226.1| threonyl-tRNA synthetase [Streptomyces sp. AA4]
 gi|302436779|gb|EFL08595.1| threonyl-tRNA synthetase [Streptomyces sp. AA4]
          Length = 678

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 59/436 (13%), Positives = 125/436 (28%), Gaps = 36/436 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R      G   ++ 
Sbjct: 262 EAERRDHRKLGAELDLFS-FPEEIGSGLPVFHPKGGIIRRELENYSRRRHEEAGYEFVNT 320

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +   DL+  SG    Y   M       ++       +  +   IFRS  +SYR LP  
Sbjct: 321 PHISKGDLFHTSGHLPYYADTMFPPVQFEEEDYYLKAMNCPMHNLIFRSRGRSYRELPLR 380

Query: 132 FYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            ++    +R E      G+ R R   M D++ +    +        +    L +    GL
Sbjct: 381 LFEFGTVYRYEKSGVVHGLTRVRGLTMDDSHIYCTKEQMPSEL-RSLLKFVLDLLADYGL 439

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +   +         E                   +    +      D         
Sbjct: 440 SDFYLELSTRGDSDKFIGE---------------DWEWEEATETLRQAAVDSGLELVPDP 484

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y       + +  D++    ++S   ++           +      +   DG   
Sbjct: 485 GGAAFYGPKI---SVQAKDAIGRTWQMSTIQLDFNQ--------NKRFGLEYTAPDGSRQ 533

Query: 311 YV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +     G++     V+    +     +P  ++P +   I I        +    + 
Sbjct: 534 RPIMIHRALFGSIERFFGVLT---EHYAGAFPAWLSPVQTVAIPIT---ADQVEYLRGVE 587

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L   G  V  D   +++  +         P  ++ G+K      V  + R  G    +
Sbjct: 588 KALRAKGIRVEVDASDDRMQKKIRTHTTQKVPFLLLAGAKDAEAGAVSFRFRDGGQINGV 647

Query: 430 SLEEVINYASHRFSNN 445
            +++ +   +   +  
Sbjct: 648 PVDQAVEAIAEWVARR 663


>gi|46199818|ref|YP_005485.1| threonyl-tRNA synthetase [Thermus thermophilus HB27]
 gi|73919837|sp|Q72HH1|SYT_THET2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|46197445|gb|AAS81858.1| threonyl-tRNA synthetase [Thermus thermophilus HB27]
          Length = 659

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 85/451 (18%), Positives = 156/451 (34%), Gaps = 41/451 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
             +Y   + +   RD      +L L   +I     KG+  WLP G    + + A +REEQ
Sbjct: 238 LKEYLWQLEEAKKRDHRRLGRELELF--LIDPMVGKGLVLWLPKGNVVREELMAFMREEQ 295

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDI 117
            R G   ++ P + S +L+  SG Y  Y +         ++      +  P +      I
Sbjct: 296 VRRGYQLVTTPHIGSLELYKTSGHYPYYAESQFPPISFKERGEEEEYLLKPMNCPHHIRI 355

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +    +SYR LP    +    +R E      G+ R R F   DA+ F    E     +  
Sbjct: 356 YAYRKRSYRELPLRLAEFGTVYRYEKAGELLGLTRVRGFTQDDAHIFCTPEEVKGE-FLG 414

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L++F  LGLK    R              I + D    +    +           
Sbjct: 415 VLDLVLKVFATLGLKDYRAR--------------IGVRDPKSDKYVGDEAKWALAERQIE 460

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               +     ++ E   A Y    D     + D+L    ++    ++      FG     
Sbjct: 461 EAAAEAGLRYTVEEGDAAFYGPKLDF---VVKDALGREWQLGTIQVDYNLPERFG----- 512

Query: 297 PMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               T+ G DG++H    +     G++     ++     G   +W   V    + +    
Sbjct: 513 ---LTYVGKDGEEHRPVMLHRAPFGSLERFIGILIEHFAGDFPLWLAPVQAVVVPV---- 565

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +       ++  RL + G     D   E++ ++   A++   P  ++VG +  ++  
Sbjct: 566 --SEKQEGYAREVAGRLKEAGLRAEADTRPERMQARIRDAEVQKVPYVLVVGEREKAEGA 623

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           V ++ R  G    M L   +  A   +   R
Sbjct: 624 VSVRRRKKGNLGTMPLAAFLEGALREYRERR 654


>gi|258625204|ref|ZP_05720117.1| prolyl-tRNA synthetase [Vibrio mimicus VM603]
 gi|258582494|gb|EEW07330.1| prolyl-tRNA synthetase [Vibrio mimicus VM603]
          Length = 571

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 123/290 (42%), Positives = 168/290 (57%), Gaps = 20/290 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + SY+ M  +
Sbjct: 121 EVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLQKSYDAMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN---- 236
           Y + F R+GL   P+ A+SG IGG+ S EF VLA++GE  +       D+    E     
Sbjct: 181 YCKAFDRMGLDYRPVLADSGAIGGNGSQEFHVLAESGEDLIVF-STESDYAANIEKAEAL 239

Query: 237 ---------------TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                           D  +  ++  +VEQ   P   T      K  D++
Sbjct: 240 APAAEAAAPTQEMTLVDTPNAKTIAELVEQHGLPIEKTVKTLFVKASDAI 289



 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/190 (36%), Positives = 112/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  GT YS  M+     ++GK+  ++M
Sbjct: 382 GKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSAKMNCGVLDSNGKNAILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +     +  ++A EK+YA L+
Sbjct: 442 GCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHKSERVQEAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F+  +L+G P  VI+G + + +   E K+R  G +E +++E 
Sbjct: 502 AAGIEVLFDDRKERPGVMFSDMELIGVPHTVIIGDRSMDEGHFEYKNRRNGEKEAVAMES 561

Query: 434 VINYASHRFS 443
           +I++   + +
Sbjct: 562 IIDFIQAKLA 571


>gi|311030092|ref|ZP_07708182.1| prolyl-tRNA synthetase [Bacillus sp. m3-13]
          Length = 561

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 121/265 (45%), Positives = 167/265 (63%), Gaps = 5/265 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P DAE+ SH+L+LR G I Q++ GIYS+LPLG+K L  V  ++REE
Sbjct: 1   MKQSNMLIPTLREVPADAEVKSHQLLLRAGYIRQNTSGIYSFLPLGKKVLKKVEDVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA+E+ +P +Q+A+LW ESGR+ SYG E++RL DR+++    G THEEV+T + R 
Sbjct: 61  MENAGAVELLMPAMQAAELWKESGRWYSYGPELMRLNDRHNREFALGATHEEVITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP + YQIQ KFRDE RPRFG++R REFLMKDAYSF    E    +Y KMF +
Sbjct: 121 EVKSYKKLPLSLYQIQTKFRDEKRPRFGLLRGREFLMKDAYSFHANAESLDETYEKMFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN---- 236
           Y  IF RLGL    + A+SG +GG  +HEF+VL+D GE  +        F    E     
Sbjct: 181 YSNIFTRLGLNFRAVIADSGAMGGKDTHEFMVLSDIGEDTIAY-STESSFAANIEMAPVV 239

Query: 237 TDFDDIISLNSIVEQWTAPYAATSD 261
            +++        +E+   P   T D
Sbjct: 240 ANYEKKSEAAREMEKVNTPDQKTID 264



 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 77/205 (37%), Positives = 113/205 (55%), Gaps = 3/205 (1%)

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKY 294
           T  ++    N  V       A  +D+   +  D  P+ + V    +GIEVGHIF  GT+Y
Sbjct: 358 TGANEEGIHNINVNPSRDFNAQYTDLRFIEEGDLSPDGQGVIKFAKGIEVGHIFKLGTRY 417

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           S  M A F   +G++  + MG YGIG  RV+AA++E  HD  GI+WP +V PF + +I +
Sbjct: 418 SEAMGANFLDENGRNQPMIMGCYGIGVSRVLAAIVEQYHDENGIVWPKAVTPFDVHVIPV 477

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              ++      E+IY+ L   G  V  DD  E+ G +FA ADL+G P++V VG K   + 
Sbjct: 478 NIKNEAQASLAEEIYSELKNSGLAVLMDDRQERPGVKFADADLIGLPVRVTVGKK-AEER 536

Query: 415 KVEIKHRLTGIREDMSLEEVINYAS 439
            VE+K R TG  E++S+EE+I    
Sbjct: 537 IVEVKWRETGDMEELSVEELIQKLR 561


>gi|308233721|ref|ZP_07664458.1| prolyl-tRNA synthetase [Atopobium vaginae DSM 15829]
          Length = 575

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 115/261 (44%), Positives = 161/261 (61%), Gaps = 1/261 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK + P L+E+P DA+IASHKL++R GMI + + G+YS+LPL  +++  + +IIREE 
Sbjct: 6   RMSKLYAPTLKEDPTDADIASHKLLVRAGMIRKAAAGLYSYLPLAWRSIQKIESIIREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
               A EM  P L  A+LW +SGR+ +YG E++RL DR+D     GPTHEE  TD+ R+ 
Sbjct: 66  EAIDAQEMLAPILTDAELWHQSGRWGAYGPELMRLTDRHDHEYALGPTHEETFTDLIRNE 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +KSY++LP T Y IQ KFRDE RPRFG+MR REF+MKD YSF    E     Y +   +Y
Sbjct: 126 LKSYKDLPVTLYHIQDKFRDERRPRFGLMRGREFIMKDGYSFCANQESLHECYEQEKDAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFD 240
             I  R GL+++P+ A+SG IGGD S EF+ LAD GE + ++C          +     +
Sbjct: 186 ATIARRCGLRAVPVVADSGQIGGDTSVEFMALADAGEAELIYCDACDYAADTEAAVGQIN 245

Query: 241 DIISLNSIVEQWTAPYAATSD 261
            +    +  E+   P   T +
Sbjct: 246 VLDDEVAACEKIKTPACQTIE 266



 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 80/194 (41%), Positives = 114/194 (58%), Gaps = 2/194 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+   +  DS P       SARGIE+  +F  GTKYS  M ATF   DG +    MG
Sbjct: 380 EWQDLIVTEAGDSCPCCSAALKSARGIEISQVFQLGTKYSKAMGATFMDEDGTEKPFIMG 439

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R +AAV+E SHD  GIIWP SVAP+++++I +  HD+      +++   L K 
Sbjct: 440 CYGIGVSRTLAAVVEQSHDEHGIIWPVSVAPYEVAVIPLDVHDETVWPVAQRLAEGLIKA 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD GE+ G +F  ADL+GFP QV+ G K ++ + VE+K+R TG R ++ ++EV+
Sbjct: 500 GIEVIVDDRGERPGIKFNDADLMGFPYQVVCGKKALAHACVEVKNRATGERTEVPVDEVV 559

Query: 436 NYASHRFSNNRPVL 449
           ++  H     R  L
Sbjct: 560 DHLVHEIVPQRQGL 573


>gi|116490538|ref|YP_810082.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Oenococcus oeni
           PSU-1]
 gi|116091263|gb|ABJ56417.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Oenococcus oeni
           PSU-1]
          Length = 663

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 157/438 (35%), Gaps = 30/438 (6%)

Query: 11  LQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           L+E   RD      ++ L      +   G+  WLP G      +   + E++ + G + +
Sbjct: 240 LEERKERDHRTIGKQMELF-FTNPEIGAGLPVWLPNGAAIRRTIEDYLVEKERQNGYMNV 298

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNL 128
             P + + DL+  SG +D Y  +M      +D   +   P +     +IF    +SYR+L
Sbjct: 299 YTPVVSNLDLYKRSGHWDHYRDDMFPAMTADDGEQLELRPMNCPSHIEIFEHEPRSYRDL 358

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           P+   +     R E       +     +  +     + PE  +  +  +      ++H  
Sbjct: 359 PYRIAEFGQMHRWEKSGALTGLSRVREMTLNDGHTVVAPEQVEPEFKGILQLIRDVYHDF 418

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G               D              + +      +    +     DD+      
Sbjct: 419 GFTDQ-----------DYRFRLSYRDPKNTKKYYDDDAMWEHAQAALKRAMDDMGLDYFE 467

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    D+   +   +L   + +S   ++    F    ++ +     + G DGK
Sbjct: 468 AEGEAAFYGPKLDI---QFKTALGNEETMSTIQLD----FLLPERFDM----KYTGEDGK 516

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           DH   +     G +  +   +    +     +P  +AP +  +I +        D    I
Sbjct: 517 DHRPVLIHR--GVVGTMERFVAFLIEKYKGQFPTWLAPVQAVVIPVNYG--AHGDYARNI 572

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADL-LGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           Y++L K G  +  D+  E++G     A + L  P  ++VG + + D+ V ++ R +   +
Sbjct: 573 YSKLMKDGRRIKLDNRDEKLGYLIRDAQVNLKTPYILVVGDQELRDNSVTVRFRGSDQTK 632

Query: 428 DMSLEEVINYASHRFSNN 445
           +M ++E     +   +N 
Sbjct: 633 EMKIDEFEEMINDDVANY 650


>gi|256850831|ref|ZP_05556220.1| threonyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260661042|ref|ZP_05861956.1| threonyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|256615893|gb|EEU21081.1| threonyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260547979|gb|EEX23955.1| threonyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
          Length = 643

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 153/434 (35%), Gaps = 36/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      +   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVIERYIIDKELADGYQHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y ++M    D  D  M    P +      +++ HI+SYR LP    
Sbjct: 296 MNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++    +  
Sbjct: 356 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALEQVQEE-FAKILKLIMDVYKDFDITD 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 415 YYFRLS-------------YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGE 461

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      ++ G DG++H  
Sbjct: 462 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERFD----LSYVGQDGEEHRP 510

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G M    A +   + G    W          +  I  +     +  +K+   
Sbjct: 511 VMIHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PEQVEIIPVNLDAHGEYAKKVRDE 565

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G     D   E++G +   +     P  +++G   ++ + V ++   T  +E MSL
Sbjct: 566 LLKHGFRAEVDFRNEKMGYKIRESQTQKVPYTLVLGDDEMNSNAVNVRPYGTEKQESMSL 625

Query: 432 EEVINYASHRFSNN 445
           ++ I+       + 
Sbjct: 626 DKFIDELQADVDSY 639


>gi|17232545|ref|NP_489093.1| prolyl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|81852728|sp|Q8YM83|SYP_ANASP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|17134191|dbj|BAB76752.1| prolyl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 604

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 115/240 (47%), Positives = 153/240 (63%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLRDDPSDAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ ++LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNATGAQECLLPQLQPSELWKESGRWDTYTKAEGIMFSLIDRREQQLGLGPTHEEVITAI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKD YSF +  +  K +Y  M
Sbjct: 121 ARDMIRSYRQLPLHLYQLQTKFRDEIRPRFGLMRGREFIMKDGYSFHVDEDSLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           + +Y  +  R GL   P+ A+SG IGG  S EF+VLA+ GE +V  + D   +    E  
Sbjct: 181 YQAYSNMLRRAGLAFRPVEADSGAIGGSGSTEFMVLAEAGEDEVLYTDDG-KYAANVEKA 239



 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 96/168 (57%), Gaps = 1/168 (0%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             SARGIEVGHIF  GTKYS  + AT+    G++  + MG YG+G  R+  + +E S+D 
Sbjct: 431 LKSARGIEVGHIFQLGTKYSQALGATYTNEQGEEKPLVMGCYGVGVSRLAQSAVEQSYDK 490

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GIIWP ++AP+   +     +D    +  EK+Y  L++ G +   DD  E+ G +F  A
Sbjct: 491 DGIIWPVAIAPYHAIVTIPNINDAQQVEIAEKLYTELNQSGVETLLDDRNERAGVKFKDA 550

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           DL+G P +++ G + +++ KVEI  R T   +++ ++EVI        
Sbjct: 551 DLIGIPYRIVTG-RAITNGKVEIVERATRQSQEIPIDEVITTLQQWIR 597


>gi|325685802|gb|EGD27875.1| threonine--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 643

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/433 (17%), Positives = 153/433 (35%), Gaps = 34/433 (7%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      +   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRIIERYIVDKEVAAGYQHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y ++M       +  M    P +      I++ HI+SYR LP    
Sbjct: 296 MNLDAYKTSGHWAHYREDMFPPMGMGEGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +  +  + +     + ++H   +  
Sbjct: 356 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQEE-FARTLQIIMDVYHDFDIND 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 415 YYFRLS-------------YRDPKNTDKYFANDEMWERSQSMLKAAMDDMGLDYVEAEGE 461

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      ++ GADG++H  
Sbjct: 462 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----ELSYIGADGEEHRP 510

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            M     G +  +   I    +     +P  +AP +  +I +        D  +K+   L
Sbjct: 511 VMIHR--GIVGTMERFIAYLTEIYKGAFPTWLAPVQAEIIPVNL--DAHSDYAKKVRDEL 566

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G     D   E++G +   +     P  +++G   ++   V ++   T  +   SL 
Sbjct: 567 VAKGFRAEIDFRNEKLGYKIRESQTQKVPYTLVLGDDEMNAGTVNVRPYGTEEQNSESLA 626

Query: 433 EVINYASHRFSNN 445
           E ++  S   ++ 
Sbjct: 627 EFMDKLSKDVASY 639


>gi|229031449|ref|ZP_04187449.1| Prolyl-tRNA synthetase [Bacillus cereus AH1271]
 gi|228729738|gb|EEL80718.1| Prolyl-tRNA synthetase [Bacillus cereus AH1271]
          Length = 566

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 121/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    ++    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SNYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|237738009|ref|ZP_04568490.1| prolyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
 gi|229419889|gb|EEO34936.1| prolyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
          Length = 569

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 127/289 (43%), Positives = 173/289 (59%), Gaps = 5/289 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKL+LR GMI + + G+Y++LPLG KAL  V  I+R E
Sbjct: 1   MRFSKSYIKTLKETPKEAEIASHKLLLRAGMIKKLTSGVYTYLPLGLKALKKVENIVRRE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ A+LW ESGR++  G  M++L DR  +  + GPTHEEV+TD+ R+
Sbjct: 61  MDRAGAQEIFMPVLQPAELWKESGRWEVMGPLMMKLQDRAKRDFVLGPTHEEVVTDVIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  T E     ++ M  +
Sbjct: 121 DVASYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHATRESLDEEFDNMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y RIF   GLK  P+ A+SG IGG  S EF VLAD+GE ++   +   D+    E     
Sbjct: 181 YKRIFSSCGLKFRPVEADSGAIGGSGSKEFHVLADSGEDEIIYCESC-DYAANVETAVSK 239

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
            F         VE    P  +  +   E L   +    +      ++G 
Sbjct: 240 VFHAEKEELKAVELVDTPNVSKIEDVVEYLKVPVERTVKAMMY-RDMGT 287



 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 73/185 (39%), Positives = 98/185 (52%), Gaps = 3/185 (1%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           DV   K      +      SARGIEVGHIF  GTKYS  + ATF    G  H + MG YG
Sbjct: 384 DVKTVKPGHVCEKCGGTLASARGIEVGHIFKLGTKYSEKLEATFIDEKGVTHPIIMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R +A+ IE ++D  GI+WP ++AP+ + +I     D       E++Y  L   G D
Sbjct: 444 IGVSRTLASAIEQNNDEFGIVWPSAIAPYVVDVIPANMKDAEQVALAEELYNSLLDEGID 503

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              DD  E+ G +F  ADL+GFP +VI G K  ++  VE+K R TG   ++S +EVI   
Sbjct: 504 TILDDRDERPGFKFKDADLIGFPFKVICGKK-AAEGIVELKIRKTGETFEISKDEVIYKV 562

Query: 439 SHRFS 443
                
Sbjct: 563 RELMK 567


>gi|139439769|ref|ZP_01773160.1| Hypothetical protein COLAER_02191 [Collinsella aerofaciens ATCC
           25986]
 gi|133774919|gb|EBA38739.1| Hypothetical protein COLAER_02191 [Collinsella aerofaciens ATCC
           25986]
          Length = 573

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 108/227 (47%), Positives = 155/227 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+E+P DAE+ASH+L+LR GMI + + G+YS+LPL  +++  +  I+R+E
Sbjct: 5   MYMSKLYAPTLKEDPADAELASHRLLLRAGMIRKEAAGLYSYLPLAWRSIRKIENIVRDE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +  A+LW ESGR D+YGKE++R  DR+ +  + GPTHEE +T + R+
Sbjct: 65  MDAAGAQELMMPIMVDAELWRESGRIDAYGKELVRFDDRHGREFVLGPTHEETVTALVRN 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   Y IQ KFRDE RPRFG+MR REF+MKDAYSF  T E  +  Y+KM  +
Sbjct: 125 ELRSYKQLPVNLYHIQDKFRDEFRPRFGLMRGREFIMKDAYSFSATQESLQEEYDKMKQA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y  I  R  +K++P+ A+SG IGGD S E++ LAD GE  +    + 
Sbjct: 185 YANICERCYIKALPVVADSGEIGGDTSVEYMALADAGEASLVYCDEC 231



 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 110/191 (57%), Gaps = 2/191 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+      D  P       +ARGIEV  +F  GTKYS  M ATF   DGK+  + MG
Sbjct: 382 EWADLVTVVAGDPCPHCGKPLSAARGIEVSQVFQLGTKYSEAMGATFMDEDGKEKPLIMG 441

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG+G  R +AAV+E  +D  GI+WP SVAP+++++I +    + C   CE+I   L   
Sbjct: 442 CYGVGVSRSLAAVVEQHNDEHGIVWPVSVAPYEVAVIPLDPKKEECATVCEQIVDGLCAE 501

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G +FA  DL+GFP QV++G + + +  VE+K R TG RED++++EV+
Sbjct: 502 GIEVVVDDRDERPGFKFADNDLMGFPYQVVLGKRGLKNGTVELKDRATGEREDVAIDEVV 561

Query: 436 NYASHRFSNNR 446
              +      R
Sbjct: 562 AKVAELVKAAR 572


>gi|39936469|ref|NP_948745.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
 gi|73919820|sp|Q6N4D3|SYT_RHOPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|39650325|emb|CAE28847.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
          Length = 658

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 140/443 (31%), Gaps = 38/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W   G     ++   +R       
Sbjct: 234 YLHQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHAKGWSLFQSLVGYMRRRL-AGD 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M       D     +     P +      IF+ 
Sbjct: 291 YDEVNAPQILDKVLWETSGHWEWYRENMFAAQSAGDDAEDKRWFALKPMNCPGHVQIFKH 350

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + ++       +
Sbjct: 351 GLKSYRDLPLRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVFCTEAQLAEECIKINDL 410

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                        + ++  + P     + E    A+        +    +      N   
Sbjct: 411 ILSTYSDFGFEGELTVKLSTRPEKRVGTDEMWDHAER-----VMATVLSEIKAKGGNRIK 465

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +I           A Y    +     L D++  + +     ++      FG        
Sbjct: 466 TEI------NPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVDFNLPERFG-------- 508

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +  ADG     V +     G+M     ++   + G   +W   V     ++       
Sbjct: 509 AFYIDADGAKKAPVMVHRAICGSMERFTGILIEHYAGNFPLWLAPVQVVVTTIT------ 562

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  +K+ A L K G     D   E+I  +     L   P  ++VG K      V +
Sbjct: 563 SEGDDYAKKVLAALRKAGLRADIDLRNEKINFKVREHSLAKVPALLVVGKKEAESHSVSV 622

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  ++ M  +E I      
Sbjct: 623 RRLGSDGQKVMPTDEAIAALVDE 645


>gi|187250976|ref|YP_001875458.1| threonyl-tRNA synthetase [Elusimicrobium minutum Pei191]
 gi|186971136|gb|ACC98121.1| Threonyl-tRNA synthetase [Elusimicrobium minutum Pei191]
          Length = 583

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/450 (16%), Positives = 158/450 (35%), Gaps = 35/450 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + ++Y     +   RD      +L L + +      G+    P G      V   IR+E 
Sbjct: 164 KLNEYIKQQEEAAKRDHRKLGIELDLFS-ISEDIGPGLILMHPKGGMLRKVVEDWIRDEN 222

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G   +  P +    LW +SG  + Y + M +  + +D+     P +      I+ SH
Sbjct: 223 IKHGYDLVYSPHIARLHLWQKSGHANFYSENMFQPIEVDDQQYQLKPMNCPFHIAIYESH 282

Query: 122 IKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR+LP    ++   +R E      G++R R F   DA+ F    + +       F  
Sbjct: 283 LRSYRDLPVRLAELGTVYRYERSGVVHGLLRVRGFTQDDAHIFCTPEQMNGE-IEDCFNF 341

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            + +    G +   +   +               +T        K   +    +  +   
Sbjct: 342 AMLVMKTFGFEKFSVELST-------------WDETKPENYTGGKKDWEEAQNALESVLK 388

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 ++     A Y    D+   K+ D++    ++S    +    F    K+      
Sbjct: 389 KNNVPFTVHAGEAAFYGPKIDI---KVMDAIGRYWQLSTIQFD----FNLPQKF----EL 437

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            +   +G+   + +    +G++     V+   + G   +W   V    ++L         
Sbjct: 438 EYVSPEGRKRPLMVHRALLGSIERFLGVLIEHYAGLFPLWLAPVQVKLLTLT------DD 491

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  + +  ++   G     D   E++G +   A +   P  +++G+K   +  + ++ 
Sbjct: 492 QFDFAKDVVKQMKLAGLRAELDSRPEKLGLKIREAHVEKIPYSIVIGAKEAENKTLTLRL 551

Query: 421 RLTGIREDMSLEEVINYASHRFSNN--RPV 448
           R     E +S+ +VI            +P+
Sbjct: 552 RSGKNVEGLSVGDVIAKLKEEADTKSLKPL 581


>gi|298528346|ref|ZP_07015750.1| prolyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511998|gb|EFI35900.1| prolyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 577

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 125/237 (52%), Positives = 164/237 (69%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P L+E P +AE+ SHKLMLR GMI + + GIY++LP G +AL  ++ +IR E
Sbjct: 1   MRWSRYFMPTLKEEPAEAEVVSHKLMLRAGMIRKLTAGIYTYLPAGWRALQKISEVIRGE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR  AIE+ +P +Q  DLW E+GR+++YGKE+LR  DR+D+    GPTHEEV+TD+ R 
Sbjct: 61  MNRFYAIELLMPAVQPGDLWKETGRWEAYGKELLRFRDRHDRDYCIGPTHEEVITDLIRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD    G+  SY  M  +
Sbjct: 121 EVSSYRQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDKDEAGAAQSYEWMRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y+ IF +LGL+   + A+SG IGG +S EF+VLADTGE  +       DF    E  
Sbjct: 181 YVSIFEKLGLQFRGVEADSGAIGGSVSQEFMVLADTGEDVIATCTHC-DFAANLEKA 236



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/210 (35%), Positives = 111/210 (52%), Gaps = 2/210 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPM 298
           D   L  +  +  A   A  D+ +    D  P  +      +GIEVGHIF  G KYS  M
Sbjct: 362 DDAHLRHVDLRRDAQVNAYHDLRSITREDPCPRCQGGIRMTKGIEVGHIFMLGAKYSQSM 421

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A +    G +  + MG YGIG  RV+AA IE +HD  GII+  ++APF++++I +   D
Sbjct: 422 NAAYLDEHGAEKPLIMGCYGIGVGRVLAACIEQNHDENGIIFTPAIAPFEVTIIALNPKD 481

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           ++ R+  E +Y  L     DV  DD  E+ G +F   DL+G PLQVIVG+K + +  +E+
Sbjct: 482 EMVRNHSESLYNELCSQNVDVLLDDRDERPGFKFKDCDLVGSPLQVIVGAKGIKNGVLEV 541

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           K R +G R ++ LE+   +        R  
Sbjct: 542 KERHSGHRHELPLEDFGRHFQEVRRKVREH 571


>gi|15807075|ref|NP_295804.1| threonyl-tRNA synthetase [Deinococcus radiodurans R1]
 gi|22654147|sp|Q9RSP3|SYT_DEIRA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|6459875|gb|AAF11630.1|AE002044_3 threonyl-tRNA synthetase [Deinococcus radiodurans R1]
          Length = 649

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 148/448 (33%), Gaps = 42/448 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +Y   + +   RD      +L L T  I     KG+  WLP G    + +   ++E+Q +
Sbjct: 236 EYLFQLEEAKRRDHRKLGKELELFT--IDPLVGKGLPLWLPNGTVLREELTNFMKEQQFQ 293

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + DL+  SG Y  Y +        +++  +  P +      I+ S  +
Sbjct: 294 RGYQGVVTPNIGNLDLYRTSGHYPYYSESQFNPIQVDEEEYMLKPMNCPHHVRIYASKPR 353

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +    +R E      G+ R R F   DA+ F    +  +  +  +    +
Sbjct: 354 SYRDLPVRLAEFGTVYRYEQSGELNGLTRVRGFTQDDAHIFCRPDQLKRE-FLDVLDLTV 412

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G+  +  R              + + D    +    +              +++
Sbjct: 413 LVLKTFGMTDVRFR--------------VGVRDPESDKYVGDEQNWALAERQIIEAVEEV 458

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +I     A Y    D     + D L    ++    ++                 ++
Sbjct: 459 GLPYTIEPGDAAFYGPKLDF---VVKDVLGREWQLGTIQVDYNLP--------ERFDISY 507

Query: 303 KGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            G DG++H   M          R    +IE       +                      
Sbjct: 508 TGEDGQEHRPIMIHRAPFGSIERFTGILIEHYAGDFPLWLAPRQVMIIPIA-------DR 560

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                E++   L + G     DD   ++ ++   A+L   P+ +IVG K     +V ++ 
Sbjct: 561 HNAYAEELREELHRAGLRAEVDDSSNRMQAKVRDAELHKIPVMLIVGDKEQEAREVSVRE 620

Query: 421 R---LTGIREDMSLEEVINYASHRFSNN 445
           R    T  R+ +  +E+      R  N 
Sbjct: 621 RTGEGTKERKGVKFDELKAELLERRKNR 648


>gi|229104381|ref|ZP_04235050.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228679079|gb|EEL33287.1| Prolyl-tRNA synthetase [Bacillus cereus Rock3-28]
          Length = 566

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 121/267 (45%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL+D GE  +  S    ++    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SNYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ASYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQALI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|94676512|ref|YP_589036.1| prolyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|114152171|sp|Q1LSM8|SYP_BAUCH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94219662|gb|ABF13821.1| prolyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 557

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 121/253 (47%), Positives = 171/253 (67%), Gaps = 3/253 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  ++E P DAE+ SH+LMLR G+I Q + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTIKEIPLDAEVISHQLMLRAGIIRQLASGLYTWLPTGLRILRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q A+LW+ESGR+  YG E+LR  DR+ +  + GPTHEEV+TD+ R+
Sbjct: 61  MNNIGAIEVSMPIVQPANLWLESGRWGQYGPELLRFTDRSTRQFLLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   +QI+ KFRDE+RPR+GVMRSREF+MKDAYSF  + +  + +Y+ M+ +
Sbjct: 121 EVKSYKQLPLNLFQIKTKFRDEVRPRYGVMRSREFIMKDAYSFHTSQQSLQATYDLMYYT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ---VFCSKDFMDFPIPSENT 237
           Y  IF+R+GL    ++A+ G IGG LSHEF+ L    E Q   +  S    +  +PSEN 
Sbjct: 181 YNTIFNRIGLDVRTVQADPGSIGGHLSHEFLALVSNYEDQMLLIDASHKATERNLPSENL 240

Query: 238 DFDDIISLNSIVE 250
              D   + ++ E
Sbjct: 241 QLVDAPGIYTLTE 253



 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/171 (36%), Positives = 103/171 (60%), Gaps = 1/171 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           +      IEVGHIF  G+KYS  M AT +G DG +  + MG YGIG  RVVAA I+  +D
Sbjct: 387 RLHRTNWIEVGHIFQLGSKYSKVMKATVQGEDGNNMIMTMGCYGIGITRVVAAAIDKYND 446

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            +G++ P S+APF++++I I  H   + +   E++Y +LS    DV  DD  E+ G  FA
Sbjct: 447 KQGLLLPVSIAPFQVAIIPINLHKSLLVQTVAEQLYNQLSIRKIDVLLDDRKERPGVMFA 506

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             +L+G P  +I+G + ++  K+E K+R  G ++ M+L  ++++   + ++
Sbjct: 507 DIELIGIPHIIIIGDRNLAVQKIEYKNRSNGEKKLMNLSIIVDWIVAKLNS 557


>gi|282934500|ref|ZP_06339755.1| threonine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|281301447|gb|EFA93736.1| threonine--tRNA ligase [Lactobacillus jensenii 208-1]
          Length = 644

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 153/434 (35%), Gaps = 36/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      +   I +++   G   +  P L
Sbjct: 239 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVIERYIIDKELADGYQHVYTPVL 296

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y ++M    D  D  M    P +      +++ HI+SYR LP    
Sbjct: 297 MNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQVYKHHIRSYRELPIRIA 356

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++    +  
Sbjct: 357 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALEQVQEE-FAKILKLIMDVYKDFDITD 415

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 416 YYFRLS-------------YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGE 462

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      ++ G DG++H  
Sbjct: 463 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERFD----LSYVGQDGEEHRP 511

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G M    A +   + G    W          +  I  +     +  +K+   
Sbjct: 512 VMIHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PEQVEIIPVNLDAHGEYAKKVRDE 566

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G     D   E++G +   +     P  +++G   ++ + V ++   T  +E MSL
Sbjct: 567 LLKHGFRAEVDFRNEKMGYKIRESQTQKVPYTLVLGDDEMNSNAVNVRPYGTEKQESMSL 626

Query: 432 EEVINYASHRFSNN 445
           ++ I+       + 
Sbjct: 627 DKFIDELQADVDSY 640


>gi|224531616|ref|ZP_03672248.1| threonyl-tRNA synthetase [Borrelia valaisiana VS116]
 gi|224511081|gb|EEF81487.1| threonyl-tRNA synthetase [Borrelia valaisiana VS116]
          Length = 581

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 153/443 (34%), Gaps = 37/443 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L + +E   RD      +L L +    +   G+  + P G K    +    REE ++
Sbjct: 172 RSYLNLREEIKKRDHRKLGKELDLFSIH-EEVGPGLVFFHPNGAKIRSLIEDFWREEHSK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y   M    + +       P +      I+ +   
Sbjct: 231 NGYDILFTPHVGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYNTGKH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G+MR+R F   DA+      +       ++    +
Sbjct: 291 SYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHIICTHSQVVDE-IKEVLRFAI 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++++ G  S+     + P                  +   +    +  +        D 
Sbjct: 350 YMWNKFGFNSLKAYLSTKP-----------------DKSVGNDADWEMSLKVLEETLSDF 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I +   A Y    D+   K+ DSL    ++S    +    F    ++++  +A  
Sbjct: 393 EVPYEIDKGGGAFYGPKIDL---KIVDSLEREWQMSTIQFD----FNLPERFNMTYTA-- 443

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +     +    +G++     ++   + G   +W             I   +    
Sbjct: 444 -DDGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLW------LSPVQAVIIPVNNTVE 496

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+  +    G  +  D+   ++ ++         P   I+G + V++ ++ I+ R 
Sbjct: 497 DYAIKVLNKFKNEGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREVAEERISIRTRT 556

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 + L E + +   +  N 
Sbjct: 557 NEQINGIELNEALKFILLKIRNK 579


>gi|220931621|ref|YP_002508529.1| prolyl-tRNA synthetase [Halothermothrix orenii H 168]
 gi|254782904|sp|B8CW65|SYP_HALOH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219992931|gb|ACL69534.1| prolyl-tRNA synthetase [Halothermothrix orenii H 168]
          Length = 568

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 115/277 (41%), Positives = 171/277 (61%), Gaps = 5/277 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  ++P L+E P++AE+ SH+LMLR G+I   + G+YS+LPLG + +  +  IIR+ 
Sbjct: 1   MRMSNLYIPTLKEVPKEAEVVSHQLMLRAGLIRNLTAGVYSFLPLGYRVIKKIEGIIRKV 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA E+ +P + ++DLW ESGR++ +G  M++  DR  +    GPTHEEV+TD+ R 
Sbjct: 61  MDESGAQEVLMPVIHTSDLWKESGRWEKFGPLMIKFEDRKGREYCLGPTHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY++LP   YQIQ K RDE+RPRFG+MRSREF+MKDAYSFD   EG   SY  M+ +
Sbjct: 121 EIRSYKDLPLNLYQIQTKVRDEIRPRFGLMRSREFIMKDAYSFDRDYEGLDKSYQVMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F+R GL+   + A++G +GG  SHEF+VLA++GE  +       D+    E  +  
Sbjct: 181 YTEVFNRCGLEVRAVEADTGAMGGKDSHEFMVLAESGEDDIAFCNRC-DYAANVERAEAR 239

Query: 241 DIISLNS----IVEQWTAPYAATSDVHNEKLFDSLPE 273
            + S  +     +E+   P     D   E L     +
Sbjct: 240 YVKSEKNEEIKPLEKVETPGKKKIDELVEFLKMPSEK 276



 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 105/188 (55%), Gaps = 3/188 (1%)

Query: 261 DVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   K  D  P  +       GIEVGHIF  GTKYS  M AT+   +GK+  + MGSYG
Sbjct: 382 DIRKVKEGDQCPHCEGTIEIKSGIEVGHIFKLGTKYSESMGATYLDENGKEQPIVMGSYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+VAA IE +HD  GIIWP ++AP+++ ++ +   D+      E++Y  L     +
Sbjct: 442 IGVTRLVAAAIEQNHDEHGIIWPKAIAPYQVIILPLGKGDE-VNKRAEELYLELKDNNIE 500

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +F  ADL+G PL++ +GS+ +    +E + R TG   ++S+E+ I   
Sbjct: 501 VLLDDRNERAGVKFNDADLIGIPLRLTIGSRSLDKGVIEARVRGTGQDYEISVEDAIKDI 560

Query: 439 SHRFSNNR 446
                N +
Sbjct: 561 KKLLENVK 568


>gi|282864200|ref|ZP_06273256.1| threonyl-tRNA synthetase [Streptomyces sp. ACTE]
 gi|282560687|gb|EFB66233.1| threonyl-tRNA synthetase [Streptomyces sp. ACTE]
          Length = 658

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 70/442 (15%), Positives = 136/442 (30%), Gaps = 38/442 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD     ++L L +    +   G+  + P G      +    R      G   +
Sbjct: 252 LEEAAKRDHRKLGNELDLFS-FPDEIGPGLAVFHPKGGVIRRAMEDYSRRRHEEEGYEFV 310

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             P      L+ +SG  D Y   M      +D       P +  +   IF +  +SYR L
Sbjct: 311 YSPHATKGKLFEKSGHLDWYADGMYPPMQLDDGVDYYLKPMNCPMHNLIFDARGRSYREL 370

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P   ++    +R E      G+ RSR F   DA+ +    + ++   ++     L +   
Sbjct: 371 PLRLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIYCTREQMAEEL-DRTLTFVLNLLRD 429

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            GL    +   +                    +   S +  +    +     +       
Sbjct: 430 YGLTDFYLELST----------------KDPEKFVGSDEAWEEATETLRQVAEKQGLPLV 473

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                 A Y       + +  D++    ++S   ++    F    ++       + G DG
Sbjct: 474 PDPGGAAFYGPKI---SVQCKDAIGRTWQMSTVQLD----FNLPERFD----LEYTGPDG 522

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                  +     G++    AV+    +     +P  +AP +   I I           +
Sbjct: 523 TKQRPVMIHRALFGSIERFFAVLL---EHYAGAFPVWLAPVQAVGIPIG---DTHIPYLQ 576

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +  A   K G  V  D   +++  +         P  VIVG   ++   V  +HR     
Sbjct: 577 EFAAEARKKGLRVEVDASSDRMQKKIRNHQKAKVPFMVIVGDDDMNAGTVSFRHRDGSQE 636

Query: 427 EDMSLEEVINYASHRFSNNRPV 448
             +  +E I            V
Sbjct: 637 NGIPRDEAIAKLVDLVERRVQV 658


>gi|260662523|ref|ZP_05863418.1| threonyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
 gi|260553214|gb|EEX26157.1| threonyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
          Length = 627

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 150/440 (34%), Gaps = 36/440 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
             +   RD  +  ++L L    +  +   G+  W+P G      +   + +++   G   
Sbjct: 216 RQEARERDHRVIGNQLDLF--FVDPKVGAGLPYWMPKGSTIRRTIERYVIDKEVGDGYEH 273

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRN 127
           +  P L + D +  SG +D Y ++M    D  D  +    P +      I++ HI+SYR 
Sbjct: 274 VYTPVLMNLDAYKTSGHWDHYREDMFPPMDMGDGELLELRPMNCPSHIQIYKHHIRSYRE 333

Query: 128 LPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP    ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++ 
Sbjct: 334 LPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQIQDE-FAKILKLIMDVYK 392

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
              +     R                       + F + +  +          D +    
Sbjct: 393 DFNINDYTFRLS-------------YRDPKNTEKYFANDEMWERSQSMLKAAMDSMGLDY 439

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    D+  +    +L  ++ +S   ++    F    K+ L     + G D
Sbjct: 440 YEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPEKFDLH----YVGED 488

Query: 307 GKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           GK H    +    +G M    A +   + G    W          +  I   D+   D  
Sbjct: 489 GKQHRPVMIHRGVVGTMERFVAYLTEIYKGAFPTWLA-----PNQVNIIPVSDEKHGDYA 543

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +             D   E++G +   +     P  ++VG   V++  V ++      
Sbjct: 544 DDLAREFRAAQLRTVVDHRSEKMGYKIRESQTQKVPYTLVVGEDEVANGTVSVRKYGEKD 603

Query: 426 REDMSLEEVINYASHRFSNN 445
           +  MS ++ ++   H  +  
Sbjct: 604 QVSMSKQDFLDLILHDVATY 623


>gi|303278011|ref|XP_003058299.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460956|gb|EEH58250.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 698

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 144/429 (33%), Gaps = 38/429 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  W P G    + +    ++     G   +  
Sbjct: 295 EAARRDHRKIGKELNLFSIQQEEVGGGLVFWHPKGALMRNIIENFWKDIHMARGYDLLYT 354

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +   DLW  SG  D Y + M +  D  D+     P +      +++    SYR+LP  
Sbjct: 355 PHVGKLDLWKTSGHADFYAENMYKPMDVEDETYQLKPMNCPFHVAVYKDGYFSYRDLPIR 414

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           + ++   +R E      G+ R R F   DA+ F L  + +           L +   +  
Sbjct: 415 WAEMGTVYRYERSGTMHGLFRVRGFTQDDAHIFCLPDQIADE-----IKGVLDLTEDILS 469

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                             EF V   T   +     +  D    +             + E
Sbjct: 470 TF-------------GFTEFEVNLSTKPEKSVGGPEIWDKAEGALKEALAVKGWDYEVDE 516

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KD 309
              A Y    D+   K+ D++    + S   ++    F    ++      T+   +  K 
Sbjct: 517 GGGAFYGPKIDI---KILDAIGRKWQCSTVQLD----FNLPERF----ELTYIDEENSKR 565

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             + +     G++     ++    +     +P  +AP ++ L+ +           E+  
Sbjct: 566 RPIMIHRAIFGSLERFYGILT---ENYAGAFPLWIAPTQVRLLPVT---DAVTPYVEETV 619

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           AR+   G  V      E++      A+    P+  +VG +   D  + ++    G    +
Sbjct: 620 ARMKAAGVRVDV-TSKERLAKLVRNAEKQKVPVMCVVGEQEAKDGTLAVRTYADGDVGVI 678

Query: 430 SLEEVINYA 438
           +++EVI   
Sbjct: 679 TVDEVIARL 687


>gi|227514102|ref|ZP_03944151.1| threonine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
 gi|227087473|gb|EEI22785.1| threonine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
          Length = 634

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 150/440 (34%), Gaps = 36/440 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
             +   RD  +  ++L L    +  +   G+  W+P G      +   + +++   G   
Sbjct: 223 RQEARERDHRVIGNQLDLF--FVDPKVGAGLPYWMPKGSTIRRTIERYVIDKEVGDGYEH 280

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRN 127
           +  P L + D +  SG +D Y ++M    D  D  +    P +      I++ HI+SYR 
Sbjct: 281 VYTPVLMNLDAYKTSGHWDHYREDMFPPMDMGDGELLELRPMNCPSHIQIYKHHIRSYRE 340

Query: 128 LPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP    ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++ 
Sbjct: 341 LPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQIQDE-FAKILKLIMDVYK 399

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
              +     R                       + F + +  +          D +    
Sbjct: 400 DFNINDYTFRLS-------------YRDPKNTEKYFANDEMWERSQSMLKAAMDSMGLDY 446

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    D+  +    +L  ++ +S   ++    F    K+ L     + G D
Sbjct: 447 YEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPEKFDLH----YVGED 495

Query: 307 GKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           GK H    +    +G M    A +   + G    W          +  I   D+   D  
Sbjct: 496 GKQHRPVMIHRGVVGTMERFVAYLTEIYKGAFPTWLA-----PNQVNIIPVSDEKHGDYA 550

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +             D   E++G +   +     P  ++VG   V++  V ++      
Sbjct: 551 DDLAREFRAAQLRTVVDHRSEKMGYKIRESQTQKVPYTLVVGEDEVANGTVSVRKYGEKD 610

Query: 426 REDMSLEEVINYASHRFSNN 445
           +  MS ++ ++   H  +  
Sbjct: 611 QVSMSKQDFLDLILHDVATY 630


>gi|20429011|emb|CAC79651.1| threonyl-tRNA synthetase [Oryza sativa Japonica Group]
          Length = 531

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 158/446 (35%), Gaps = 38/446 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  +Y   + +   RD  +      L     HQ S G   +LP G    + +   +R++ 
Sbjct: 123 RLKEYKHLLEEAKKRDHRLLGQTQDLF--FFHQLSPGSCFFLPHGAIIYNKLMDFLRQQY 180

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + +  LW  SG   +Y + M  + +   +     P +      +F   
Sbjct: 181 RDRGYQEVLSPNIYNMQLWETSGHAANYKENMF-VFEIEKQEFGLKPMNCPGHCLMFEHR 239

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP       +  R+EL     G+ R R F   DA+ F       K     +   
Sbjct: 240 VRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCR-ESQIKDEVKAVLDF 298

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G K   +   + P       E                   +          +
Sbjct: 299 INYVYEIFGFKYE-LELSTRPEKYLGDIE-----------------TWNKAEQQLTEALN 340

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +      I E   A Y    D+    +FD+L    + +   ++    F    ++ L  SA
Sbjct: 341 EFGKPWQINEGDGAFYGPKIDIG---VFDALKRKFQCATLQLD----FQLPLRFKLTYSA 393

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                   +  V +    +G++  + A++    +     WP  ++P +  + +I ++   
Sbjct: 394 E--DEAKLERPVMIHRAILGSVERMFAILL---EHYNGKWPLWLSPRQAIVCSISSNS-- 446

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +++  R+ + G  V  D+    I  +   A L  F   ++VG++     +V ++ 
Sbjct: 447 -VEYAKQVRVRIHEAGFHVAIDETDRTIQKKVREAQLAQFKYILVVGAQEAETGQVSVRV 505

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R       +S++++I       +  +
Sbjct: 506 RDKAELATVSIDDIITRFKEEVAAYK 531


>gi|150388509|ref|YP_001318558.1| prolyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
 gi|166980095|sp|A6TL31|SYP_ALKMQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|149948371|gb|ABR46899.1| prolyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 570

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 112/242 (46%), Positives = 155/242 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++P L+E P +AE+ SH+L+LR GMI +   G+YS+LPLG + L  V  I+REE
Sbjct: 1   MRMSKLYMPTLREVPSEAELPSHQLLLRAGMIRKLVAGVYSYLPLGYRTLKKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E  +  LQ  +LW  +GR+ + G EM+RL DR+++    GPTHEEV+TD+ ++
Sbjct: 61  MDRAGAQEALMSALQPKELWEATGRWQAIGPEMMRLKDRHNREFCLGPTHEEVITDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPRFG+MRSREF+MKDAYSFD   EG K SY  M+  
Sbjct: 121 ELKSYKQLPLNLYQIQTKYRDEKRPRFGLMRSREFIMKDAYSFDKDEEGMKKSYEDMWKG 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y R+F R  LK   +  ++G +G   SHEF+ ++  GE+ V             + T   
Sbjct: 181 YERVFDRCELKYKVVEGDAGAMGDSESHEFMAMSQYGESLVAYCDHCDYAATDEKATVVY 240

Query: 241 DI 242
           D+
Sbjct: 241 DV 242



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 68/187 (36%), Positives = 103/187 (55%), Gaps = 3/187 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+   +  D  P         RGIEVG+IF    KYS  ++ATF   +GK+ Y  MGS
Sbjct: 383 VEDLLLVQEGDLCPTCGETLKLDRGIEVGNIFQLDMKYSKGLNATFLDENGKEQYFYMGS 442

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +AAVIE  HD KGI WP ++AP+++ +  +  +    R+  EKIY++L   G
Sbjct: 443 YGIGIGRTMAAVIEQYHDEKGIKWPLALAPYQVVVTIVNPNKDEQRELGEKIYSKLLSKG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E  G +F  A+L+G P++V+ G K   ++ VE   R T  ++++  +EV+ 
Sbjct: 503 VEVLLDDRKESPGVKFKDAELIGIPIRVVAG-KNAGENIVEFALRATDEKKEVEADEVVE 561

Query: 437 YASHRFS 443
               +  
Sbjct: 562 MVMDQLK 568


>gi|311744140|ref|ZP_07717946.1| proline--tRNA ligase [Aeromicrobium marinum DSM 15272]
 gi|311313270|gb|EFQ83181.1| proline--tRNA ligase [Aeromicrobium marinum DSM 15272]
          Length = 593

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 110/280 (39%), Positives = 158/280 (56%), Gaps = 2/280 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ FL  L+++P DAE+ SH+L++R G + + + GIYSWLPLG K L  V AI+REE
Sbjct: 1   MRMSRLFLRTLRDDPADAEVPSHRLLVRAGYVRRVAPGIYSWLPLGLKVLARVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+  P L   + +  S R+  YG  + RL DR    ++ GPTHEE+ T + + 
Sbjct: 61  MEAIGAQEVRFPALLPREPYEASNRWTEYGPNLFRLTDRKGADLLLGPTHEELFTLLVKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G + SY     +
Sbjct: 121 LYGSYKDLPLSIYQIQTKYRDEARPRAGILRGREFIMKDSYSFDVDDAGLEASYQAHRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF RLG + + + A+SG +GG  S EF+ ++DTGE     S       + +  T   
Sbjct: 181 YVRIFDRLGFEYVVVHADSGAMGGSASEEFLAVSDTGEDTFVRSPGGYAANVEAVTTVAP 240

Query: 241 DIISLN--SIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
           D +  +          P   T D     L +  P + R  
Sbjct: 241 DPVPFDGLPAAHAEQTPDTPTIDTLVAHLQERFPRDDRAW 280



 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 73/195 (37%), Positives = 104/195 (53%), Gaps = 6/195 (3%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+       ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 397 GTIEAAEVRAGDPAPDGSGPLELARGIEMGHIFQLGRKYAEVLDLKVLDENGKLVTVTMG 456

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAAV+ESSHD  GI+WP ++AP+ + LI     D+       ++Y  L   
Sbjct: 457 SYGVGVSRAVAAVVESSHDDLGIVWPRALAPYDVHLIAAG-KDEAVHLGAARLYDELRAA 515

Query: 376 GCDVFWDDM--GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G DV +DD      +G +F  A+LLG P  V+VG K  +D  VE+K R TG R D+ +++
Sbjct: 516 GLDVLFDDRPGKISLGVKFKDAELLGMPTIVVVG-KGFADGVVEVKDRATGDRSDVPVDD 574

Query: 434 VINYASHRFSNNRPV 448
           ++   S      RP+
Sbjct: 575 LVELLSASVREGRPL 589


>gi|184156306|ref|YP_001844646.1| threonyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
 gi|183227650|dbj|BAG28166.1| threonyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
          Length = 634

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 150/440 (34%), Gaps = 36/440 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
             +   RD  +  ++L L    +  +   G+  W+P G      +   + +++   G   
Sbjct: 223 RQEARERDHRVIGNQLDLF--FVDPKVGAGLPYWMPKGSTIRRTIERYVIDKEVGDGYEH 280

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRN 127
           +  P L + D +  SG +D Y ++M    D  D  +    P +      I++ HI+SYR 
Sbjct: 281 VYTPVLMNLDAYKTSGHWDHYREDMFPPMDMGDGELLELRPMNCPSHIQIYKHHIRSYRE 340

Query: 128 LPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP    ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++ 
Sbjct: 341 LPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQIQDE-FAKILKLIMDVYK 399

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
              +     R                       + F + +  +          D +    
Sbjct: 400 DFNINDYTFRLS-------------YRDPKNTEKYFANDEMWERSQSMLKAAMDSMGLDY 446

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    D+  +    +L  ++ +S   ++    F    K+ L     + G D
Sbjct: 447 YEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPEKFDLH----YVGED 495

Query: 307 GKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           GK H    +    +G M    A +   + G    W          +  I   D+   D  
Sbjct: 496 GKQHRPVMIHRGVVGTMERFVAYLTEIYKGAFPTWLA-----PNQVNIIPVSDEKHGDYA 550

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +             D   E++G +   +     P  ++VG   V++  V ++      
Sbjct: 551 DDLAREFRAAQLRTVVDHRSEKMGYKIRESQTQKVPYTLVVGEDEVANGTVSVRKYGEKD 610

Query: 426 REDMSLEEVINYASHRFSNN 445
           +  MS ++ ++   H  +  
Sbjct: 611 QVSMSKQDFLDLILHDVATY 630


>gi|157803434|ref|YP_001491983.1| threonyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
 gi|166225493|sp|A8EXW5|SYT_RICCK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157784697|gb|ABV73198.1| threonyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
          Length = 635

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 151/442 (34%), Gaps = 41/442 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L      + ++G+  W   G    + V   IR++  + G
Sbjct: 231 YLFMLEEAEKRDHRKLGRELDLF--HFQEEAQGMVFWHDKGWSIYNIVEQYIRKKIRKNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW  SG ++ +   M    + ++K +   P +      IF+  IKSY
Sbjct: 289 YTEVKTPVLVDKRLWEASGHWEKFRDNMF-ALEADNKILALKPMNCPCHVQIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  L  R+E      G+MR R  +  DA+ F    + +  + +        +
Sbjct: 348 RDLPLRMSEFGLCHRNEASGALHGLMRVRSLVQDDAHIFCAEEQITDETVSF-CKLLTEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++    P     S E                   D    +     +    
Sbjct: 407 YKDFGFTDIKVKFSDRPEIRAGSDE-----------------VWDKAENALKEAVEKAGF 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             ++     A Y    +     L D++    +     ++   +            A++  
Sbjct: 450 TYTLNPGEGAFYGPKLEF---VLTDAIGRQWQCGTLQMDFVLLEQLD--------ASYVA 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           A G+      +    +G++     ++   + G   +W           + I        D
Sbjct: 499 ASGEKKRPVMLHRAILGSLERFIGILIEEYAGCFPLW------LAPVQVAIATITSDLND 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L   G     +   ++I  +         PL  I+G K   + +V I+   T
Sbjct: 553 YALAVQKALIDNGVRTDINISPDKINYKIREFSNHKVPLIAIIGKKEKENKQVTIRRLGT 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
             ++ +S++++I   S   S  
Sbjct: 613 TDQQVLSVKQLITLISEENSKY 634


>gi|320120274|gb|EFE27922.2| proline--tRNA ligase [Filifactor alocis ATCC 35896]
          Length = 596

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 107/254 (42%), Positives = 167/254 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ +LP L+E P DAE+ SH+L+LR G+I +   G+YS+LPLG++ L  +  +IREE
Sbjct: 24  MKMSRMYLPTLREVPSDAEVISHQLLLRAGLIRKLVSGVYSYLPLGKRVLAKIERVIREE 83

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +   + E+ +  +Q ++LW ESGR++++G EM RL DRN++    GPTHEE+ T + R 
Sbjct: 84  MDAANSQEVLMSAIQPSELWKESGRWENFGPEMFRLYDRNEREFCLGPTHEEIFTSLVRD 143

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP + YQIQ K+RDE RPRFGV+R+REF+MKDAY+FD  P+G K SY +M+ +
Sbjct: 144 ELKSYKQLPLSLYQIQTKYRDEKRPRFGVIRAREFIMKDAYTFDRDPDGMKQSYQEMWEA 203

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RL +K   +  +SG +GG  SHEF  +A++GE+ V  ++         +     
Sbjct: 204 YTKIFDRLHMKYRVVEGDSGAMGGSDSHEFTAMAESGESTVMYAEGCDYAATDEKAECIF 263

Query: 241 DIISLNSIVEQWTA 254
           ++   ++  ++   
Sbjct: 264 ELPVQDTEKKELEK 277



 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 4/189 (2%)

Query: 258 ATSDVHNEKLFDSLPENKR---VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              D+   +  D  P+++R    S RGIEVG+IF  GTKYS  ++ T+   DGK   V M
Sbjct: 405 VVDDLILTQEGDICPQDRRLRLKSDRGIEVGNIFQLGTKYSDSLNLTYLDQDGKSKKVWM 464

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           GS+GIG  R +AA+IE ++D KGIIWP  VAP+ I +  + A  +      E++Y   +K
Sbjct: 465 GSHGIGVSRTMAAIIEQNYDEKGIIWPLVVAPYHILITVVNAKKEDQMQLGEQLYQEYTK 524

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G +V +DD  E+ G +F  ADL+G P+++ VG +   +  VE   R  G +E++ + E+
Sbjct: 525 LGYEVLFDDRNERAGVKFNDADLIGIPIRINVGRR-AEEGIVEFSLRRGGEKEEIPVSEI 583

Query: 435 INYASHRFS 443
                  F+
Sbjct: 584 AQKVKDEFA 592


>gi|104774352|ref|YP_619332.1| threonyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423433|emb|CAI98306.1| Threonyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 643

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 153/433 (35%), Gaps = 34/433 (7%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      +   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKAGAGLPYWMPKGATIRRIIERYIVDKEVAAGYQHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y ++M    D  +  M    P +      I++ HI+SYR LP    
Sbjct: 296 MNLDAYKTSGHWAHYREDMFPPMDMGEGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +  +  + +     + ++H   +  
Sbjct: 356 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQEE-FARTLQIIMDVYHDFDIND 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 415 YYFRLS-------------YRDPKNTDKYFANDEMWERSQSMLKAAMDDMGLDYVEAEGE 461

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      ++ GADG++H  
Sbjct: 462 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----ELSYIGADGEEHRP 510

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            M     G +  +   I    +     +P  +AP +  +I +        D  +K+   L
Sbjct: 511 VMIHR--GIVGTMERFIAYLTEIYKGAFPTWLAPVQAEIIPVNL--DAHSDYAKKVRDEL 566

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G     D   E++G +   +     P  +++G   ++   V ++   T  +   SL 
Sbjct: 567 VAKGFRAEIDFRNEKLGYKIRESQTQKVPYTLVLGDDEMNAGTVNVRPYGTEEQNSESLA 626

Query: 433 EVINYASHRFSNN 445
           E +   S   +N 
Sbjct: 627 EFMGKLSKDVANY 639


>gi|110679173|ref|YP_682180.1| threonyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
 gi|123362019|sp|Q168U9|SYT_ROSDO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|109455289|gb|ABG31494.1| threonyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
          Length = 648

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 143/442 (32%), Gaps = 45/442 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W P G      +   +R +Q  
Sbjct: 234 KAHLTMLEEAAKRDHRKLGREMDLF--HMQEEAPGQVFWHPNGWSIYTTLQDYMRRKQRA 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-----GPTHEEVMTDIF 118
            G  E++ P +    LW  SG +D Y + M  +    D A         P +      IF
Sbjct: 292 AGYQEVNTPQVVDRKLWEASGHWDKYQEHMFIVEVDEDHAREKAVNALKPMNCPCHVQIF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D ++F    +  +      
Sbjct: 352 NQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHTFCR-EDQIEAECAAF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++  LG +   +   + P     S E                   D    +   
Sbjct: 411 ITYLSSVYQDLGFEKFEIMFATRPEKRVGSEE-----------------SWDHVEAALEN 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                    ++ E   A Y    D    KL D++    +     ++              
Sbjct: 454 AIKATGHPYTLDEGEGAFYGPKLDF---KLTDAIGREWQCGTFQVDPNLP--------ER 502

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G DG  H    +    +G+      ++  +  GK   W         S+I    
Sbjct: 503 LDATYIGQDGAKHRPYMLHRACLGSFERFIGILIENSAGKLPFWLAPRQVVVASII---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++  +L   G     D   E+I  +     +   P+ + VG++ V +  V
Sbjct: 559 --SDADDYVLEVVEKLQAAGVRAEADVRNEKINYKVREHSVGKVPVILAVGAREVEEKTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYA 438
            ++          +L+ V    
Sbjct: 617 TLRRLGEKKTSVETLDAVTQAL 638


>gi|289579170|ref|YP_003477797.1| prolyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
 gi|289528883|gb|ADD03235.1| prolyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
          Length = 570

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 115/255 (45%), Positives = 161/255 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  I+REE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+ KM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDVDWEGLDKSFEKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  +    +        +     
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISSVGEAVIAYCDNCGYAANEEKAECLI 240

Query: 241 DIISLNSIVEQWTAP 255
           +   +  ++ +    
Sbjct: 241 NQEIVEEMLPKEKVY 255



 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 102/190 (53%), Gaps = 3/190 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P         RGIEVGHIF  GTKYS  + A +   +G +  + MG
Sbjct: 381 VVADIKNVIEGDKCPRCGSPLKIDRGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIVMG 440

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R VAA+IE +HD KGIIWP SVAP+ + ++ +   ++      E IYA L K 
Sbjct: 441 CYGIGINRTVAAIIEQNHDDKGIIWPMSVAPYHVIIVPVNVSNEAQNGVAEDIYAALQKE 500

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD   + G +F  ADLLG P+++ VG K V D  VEIK R     E++ + +V+
Sbjct: 501 GIEVLIDDRDLRAGVKFNDADLLGIPIRITVGKK-VGDGIVEIKLRENEEAEEVKISDVV 559

Query: 436 NYASHRFSNN 445
               +     
Sbjct: 560 EKVKNIIKEK 569


>gi|283769478|ref|ZP_06342374.1| threonine--tRNA ligase [Bulleidia extructa W1219]
 gi|283103746|gb|EFC05132.1| threonine--tRNA ligase [Bulleidia extructa W1219]
          Length = 584

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 159/444 (35%), Gaps = 34/444 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD       L +          G+  WLP G      ++  I E++  
Sbjct: 169 EAYLQVLEEAKERDHRKLGKDLKMFL-FSETVGSGLPMWLPNGFTVRRLLSDYIMEKEIA 227

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P++ S  L+  SG    Y ++M  + +R+  + +  P +      I+++ + 
Sbjct: 228 LGYEHVLTPSVASTKLYEVSGHLAHYQEDMFPIMERDGDSYVLRPMNCPEHMIIYKASLH 287

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +I   FR E      G+ RSR F   D++ F L P+        +    L
Sbjct: 288 SYRDLPVRIAEIAHDFRFEASGALTGIERSRSFTQNDSHIF-LRPDQIAEEIKNVTKLIL 346

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +++  G K    R     +                 + F + D              ++
Sbjct: 347 DVYNDFGFKDYSFRLSLRDLNNTD-------------KYFGNDDLWTRSENELREVLKEM 393

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L  +  +S   ++                  +
Sbjct: 394 KVPYYEAEGEAAFYGPKIDV---QVKSALGHDVTLSTIQLDYQLP--------ERFELEY 442

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D +    V +    +G++    A +     G   +W        + +  I  + +  
Sbjct: 443 VNKDNQKVRPVVIHRAILGSLDRFVAFLLEETKGVLPLWLA-----PLQVEVIPVNSEAH 497

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   KI   L + G     DD  E++G +   A +   P+Q++VG++ + +  V ++  
Sbjct: 498 GDYASKINRALKREGIRSHLDDRNEKLGYRIREAQMNKVPIQIVVGNRDIENETVTVRTY 557

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +      S ++ +N    + +  
Sbjct: 558 GSKEEVTHSFKDYLNQLVEQIAQK 581


>gi|229544430|ref|ZP_04433488.1| prolyl-tRNA synthetase [Bacillus coagulans 36D1]
 gi|229324915|gb|EEN90592.1| prolyl-tRNA synthetase [Bacillus coagulans 36D1]
          Length = 569

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 114/282 (40%), Positives = 171/282 (60%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L++ P +AE+ SH+L+LR G I Q + G+Y++LPL +K L  + AIIREE
Sbjct: 1   MKQSKLFIPTLRDVPAEAEVKSHQLLLRAGYIRQIASGVYTYLPLAKKVLHKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G++E+ +P+LQ A+LW ESGR+ SYG +++RL DR+++    GPTHEEV+T + R+
Sbjct: 61  LEAIGSMELLMPSLQPAELWQESGRWYSYGPDLMRLKDRHERDFALGPTHEEVITSLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP + YQIQ KFRDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 EVKSYKRLPLSLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHANKESLDETYKDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R  L    + A+SG IGG  + EF+VL++ GE  +  S    D+    E  +  
Sbjct: 181 YTNIFSRCKLDFRAVLADSGAIGGKDTQEFMVLSEIGEDTIAYSDS-SDYAANIEMAEVK 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            + +     E+              ++ D L  +     + +
Sbjct: 240 TVYTKPDEAEKPLEKIPTPGQRTIAQIADFLKADPEKCLKTL 281



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 70/185 (37%), Positives = 103/185 (55%), Gaps = 4/185 (2%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N +  D  P+ K      RGIEVGHIF  GTKYS  M A F   +G++  + MG YG
Sbjct: 383 DLRNIQEGDPSPDGKGTIRFARGIEVGHIFKLGTKYSEAMHAAFLDENGREQVMLMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R + AV E  +D KG++WP ++APF + L+ +   D       E ++A L K    
Sbjct: 443 IGVSRTLTAVCEQHNDDKGLVWPVNLAPFDVHLVPVNMKDAQQSALAESLHAELEKQ-FT 501

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA +DL+G P++V VG K  ++  VE+K R TG   ++  E++    
Sbjct: 502 VLMDDRNERPGVKFADSDLIGLPVRVTVGKK-AAEGIVEVKIRKTGEVLEVKKEDLAETI 560

Query: 439 SHRFS 443
           S+  +
Sbjct: 561 SNILA 565


>gi|195952891|ref|YP_002121181.1| threonyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932503|gb|ACG57203.1| threonyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
          Length = 637

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 157/438 (35%), Gaps = 38/438 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L T +  Q   G+  WLP G      V   ++E+        + 
Sbjct: 236 EEAKKRDHRRLGKELELFT-IDEQVGPGLIIWLPKGAILRQVVEDYLKEKHRALNYQFVY 294

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +  + LW  SG    Y + M       +++    P +      I++S I+S++ LP 
Sbjct: 295 TPHVGKSTLWETSGHLSYYKENMFPGMKIEEESYYVKPMNCPFHMAIYKSKIRSHKELPI 354

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              ++   +R E+     G+MR R F   DA+ F    E  K    +       +    G
Sbjct: 355 KIAELGTVYRYEMSGVLHGLMRVRGFTQDDAHIFCK-EEDVKSVIKETLELAFDVLKDFG 413

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P     + E   ++++                 +     + +     I 
Sbjct: 414 FYDYQIFISTKPKDAIGTEENWKISES-----------------ALKESLEALDKTYEID 456

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E   A Y    D+   K+ D++    + S    +    F    ++      T+ G D K 
Sbjct: 457 EGGGAFYGPKIDI---KIKDAIGRFWQCSTIQFD----FNLPERFD----LTYVGEDNKK 505

Query: 310 HYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H    +    +G++     V+   + G   IW   ++P + ++I I        D  +++
Sbjct: 506 HRPYIIHRALLGSIERFTGVLIEHYAGHLPIW---LSPIQAAIIPIADRH---LDYAKEV 559

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +  L       + DD  E++ ++    +L   P+ ++VG K V +    ++ +    +  
Sbjct: 560 FELLKVQNIRTYIDDRPERMNAKIRDNELQKIPILLVVGDKEVQEKTFSVRSKNEEFQGV 619

Query: 429 MSLEEVINYASHRFSNNR 446
           M + + I        N R
Sbjct: 620 MGIYDFIEKLKTAIQNKR 637


>gi|157115843|ref|XP_001658309.1| threonyl-tRNA synthetase [Aedes aegypti]
 gi|108883479|gb|EAT47704.1| threonyl-tRNA synthetase [Aedes aegypti]
          Length = 716

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 151/434 (34%), Gaps = 42/434 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   IR+E  + G  E+ 
Sbjct: 311 EEAAKRDHRKLGKEQELF--FFHELSPGSCFFQPKGAHIYNTLMNFIRDEYRKRGFQEVI 368

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW  SG +  Y + M       +      P +      +F    +S+R LP 
Sbjct: 369 TPNIYNAKLWQTSGHWQHYAENMFSFESEKET-FALKPMNCPGHCLMFDHRNRSWRELPL 427

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F +  +  +       + +L   + + 
Sbjct: 428 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCMPDQIKQEII--GCLDFLAHVYGVF 485

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P       E                   +    +     D         
Sbjct: 486 GFTFNLVLSTRPEKYLGDIE-----------------VWNEAEKALAESLDKFGQPWKEN 528

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L  N + +   ++    F    ++    +  +    G+ 
Sbjct: 529 PGDGAFYGPKIDI---TIMDALKRNHQCATIQLD----FQLPIRF----NLNYIDDSGEK 577

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +    +G++  + A++    +     WP  ++P ++ ++ +        D  +K+
Sbjct: 578 KRPVIIHRAVLGSVERMIAILT---ESYAGKWPFWLSPRQVMVVPVGP---QYDDYADKV 631

Query: 369 YARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             RL + G     D D G+ +  +   A L  F   ++VG K  S   V ++ R   +  
Sbjct: 632 RQRLHEAGFMAEADLDAGDTMNKKIRNAQLAQFNFILVVGEKERSSETVNVRTRDNKVHG 691

Query: 428 DMSLEEVINYASHR 441
           ++S+++++      
Sbjct: 692 EVSVDDLVAKLRRL 705


>gi|307150016|ref|YP_003885400.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7822]
 gi|306980244|gb|ADN12125.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7822]
          Length = 608

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 156/442 (35%), Gaps = 39/442 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 196 EEALKRDHRKLGRELGLFI-FSDVVGPGLPLWTPKGTIIRTTLEEFLKKEQVKRGYLPVV 254

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P L   DL+  SG + +Y ++M  +   ++++       +  P +      I++S ++S
Sbjct: 255 TPHLARVDLFKISGHWQNYKEDMFPMMAEDEESALHEIGFVLKPMNCPFHIQIYKSELRS 314

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    +    +R E     G +        D     +TPE  +  +  +    L +
Sbjct: 315 YRDLPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPEQLEEEFLSVVDLILSV 374

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F  L LK+   R                  D    +     D  +    +  +    +  
Sbjct: 375 FKSLQLKNFKARLS--------------FRDPASDKYIGGDDVWNKAENAIRSAVQKMNM 420

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +       A Y    D       D+L    ++    ++                  +  
Sbjct: 421 EHFEAPGEAAFYGPKLDFI---FQDALEREWQLGTVQVDYNLP--------ERFDLEYVA 469

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +     G++  +  ++    +     +P  +AP ++ L+ +        D
Sbjct: 470 EDGSRKRPVMIHRAPFGSLERLVGILI---EEYAGDFPLWLAPIQVRLLPV---SDPQLD 523

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++ A+L   G     D  GE++G     A+    P+  +VG+K V  + + I+ R +
Sbjct: 524 FAKEVAAQLLSQGIRAEADTSGERLGKMIRNAEKQKIPVMAVVGAKEVESNTLSIRTRAS 583

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +++ EVI   +   +N+
Sbjct: 584 GELGTIAVSEVIEKVTEAITNH 605


>gi|160902700|ref|YP_001568281.1| prolyl-tRNA synthetase [Petrotoga mobilis SJ95]
 gi|189083505|sp|A9BGA8|SYP_PETMO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160360344|gb|ABX31958.1| prolyl-tRNA synthetase [Petrotoga mobilis SJ95]
          Length = 582

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 100/242 (41%), Positives = 154/242 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK + P L+E P D++I S++L++R G I + S G+YS+LPLG K +  +  I+REE
Sbjct: 1   MRFSKLYAPTLKETPSDSDIKSYELLIRGGFIRKISSGVYSYLPLGWKVIRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G+ E+ +P +  A+LW  +GR++ YG E+++L DR+D+    GPTHEE++T + ++
Sbjct: 61  MEKIGSQEIMLPIIHPAELWKMTGRWEDYGPELMKLKDRHDREFTLGPTHEEIVTFLMKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+  P   +QI  KFRDE+RPRFGV+R+REF+MKDAY+F         SY   + +
Sbjct: 121 ELRSYKQFPVNLFQIATKFRDEIRPRFGVLRAREFIMKDAYTFHTDYNSLHESYQHFYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  R+GLK + + A++G IGG  SHEF VLA  GE ++F  +         +    +
Sbjct: 181 YENIIKRIGLKYVVVEADTGAIGGSFSHEFHVLAQNGEGEIFYCEKCGYAASDEKARSGE 240

Query: 241 DI 242
           D 
Sbjct: 241 DF 242



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/195 (32%), Positives = 101/195 (51%), Gaps = 8/195 (4%)

Query: 260 SDVHNEKLFDSLP----ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           +D+   K  +  P     +     RGIEVG IF  G KYS  M+A F   +G+     MG
Sbjct: 383 ADIRYVKEGEKCPTQGCNSTLKRTRGIEVGQIFELGDKYSSKMNAVFTDENGEQKPYIMG 442

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG G  R + A++E  +D  GIIWP SVAPF++++I +  +D+      ++IY    K 
Sbjct: 443 CYGWGVSRTLGAIVEQLNDENGIIWPKSVAPFEVAIIPVAMNDEAIVSTSQEIYDYFLKE 502

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM---SLE 432
           G DV  DD     G +F   DL+G P+++I+G + + + K+E+K R       +   +++
Sbjct: 503 GIDVIIDDREVSAGFKFKDIDLIGVPIKIIIGKR-LKEGKIELKQRDKEEGTLIEFKNVK 561

Query: 433 EVINYASHRFSNNRP 447
           E+ +    +  N  P
Sbjct: 562 ELYDKVKEKLENYDP 576


>gi|224475774|ref|YP_002633380.1| threonyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420381|emb|CAL27195.1| threonyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 635

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/428 (17%), Positives = 146/428 (34%), Gaps = 40/428 (9%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
                 +L + +    +++ G+  +   GQ     +  ++R+ Q      E+  P +   
Sbjct: 240 HRRLGKELDIFS--FSEYAPGMPFYAHNGQVIRLELQNMLRQLQFEADYEEVYTPFIMDE 297

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            LW  SG +D Y   M    + +++     P +      I+++H+ SYR+LP    +   
Sbjct: 298 TLWKNSGHWDHYQDNM-YFTEVDEQTYALKPMNCPGHMLIYKNHLHSYRDLPIRMAEFGQ 356

Query: 138 KFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             R EL     G+ R R F   DA+ F    +      + +    +   + +      + 
Sbjct: 357 VHRHELSGSLNGLFRVRTFNQDDAHIFVRRDQIESEILDVL--GLIHKVYSVFGFDYSIE 414

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             + P       E                   DF   S     +      ++ E+  A Y
Sbjct: 415 LSTRPDDFMGEIE-----------------LWDFAEQSLENMLNQHGFKYTVNEKDGAFY 457

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MG 315
               D+H   + D+L  + +     ++    F    K+      TF    G+      + 
Sbjct: 458 GPKIDIH---IKDALGRSHQCGTVQLD----FQMPEKFD----LTFINQAGEKERPVVIH 506

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
               G+      ++     G   +W        + +  I  +  +  DA + +  RL K 
Sbjct: 507 RAIYGSSDRFIGILLEHFGGNLPLWLA-----PVQMEVILVNADLHLDAVKDLKRRLKKE 561

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  D   E++G +   A L   P  ++VG   V +  V ++ R       +++E+ +
Sbjct: 562 GFRVELDLSDEKMGYKIRQAHLKKVPYTLVVGDNEVENGTVAVRKRGESEEHSINVEDFV 621

Query: 436 NYASHRFS 443
                   
Sbjct: 622 KQLKEEVD 629


>gi|229025259|ref|ZP_04181679.1| Prolyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228736012|gb|EEL86587.1| Prolyl-tRNA synthetase [Bacillus cereus AH1272]
          Length = 566

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 120/267 (44%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL++ GE  +  S    ++    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSEVGEDTIAYSDT-SNYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|227534800|ref|ZP_03964849.1| threonyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187556|gb|EEI67623.1| threonyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 674

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 164/446 (36%), Gaps = 40/446 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +    D  +    L L    +  +   G+  W+P G      +   I +++   G  
Sbjct: 249 RRQEAAEHDHRVIGRDLDLF--FVDPKVGAGLPYWMPNGATIRRVIERYIIDKEIADGYE 306

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + DL+  SG +D Y ++M    D  D  M    P +      I+  HI+SYR
Sbjct: 307 HVYTPVLANLDLYKTSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYR 366

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++
Sbjct: 367 ELPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQEE-FKKILRLIMDVY 425

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
               +     R                  D   T+ +   D M     S      DD+  
Sbjct: 426 EDFNITDYSFRLS--------------YRDPKNTEKYFDDDEMWTRSQSMLKGAMDDLKL 471

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    D+  +    +L  ++ +S   ++    F    ++    + T+ G
Sbjct: 472 DYYEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----NLTYVG 520

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG++H   M     G +  +   I    +     +P  +AP +  LI +   + +  D 
Sbjct: 521 KDGEEHRPVMIHR--GIVGTMERFIAYLTEIYKGAFPTWLAPTQAVLIPVN--NDLHLDY 576

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT- 423
             +I  ++   G  V  DD  E++G +   A     P  V+VG K ++D+ V ++     
Sbjct: 577 VNRIKKQMLVAGLRVKVDDRNEKMGYKIREAQTKKIPYTVVVGDKELNDAAVSVRRYGDE 636

Query: 424 ---GIREDMSLEEVINYASHRFSNNR 446
                  +M ++ ++    +   + +
Sbjct: 637 HTKEEAGNMFIDALVAEVKNYSRDGK 662


>gi|254503680|ref|ZP_05115831.1| threonyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
 gi|222439751|gb|EEE46430.1| threonyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
          Length = 703

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 151/445 (33%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L      +   G+  W P G     N+ A  R    +
Sbjct: 284 KGYLHMLEEAEKRDHRKLGREMNLF--HFQEEGPGVVFWHPKGWDIFQNLIAYKRRRL-K 340

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEML-----RLADRNDKAMIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y   M           +D+     P +     +IF
Sbjct: 341 DDYKEVNAPQVLHTSLWETSGHWAWYKDNMFSVQCADPESEDDRIFALKPMNCPGHVEIF 400

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + ++      
Sbjct: 401 KHGLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVFCTEEQMAEECLKIN 460

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S E    A+        +         SE  
Sbjct: 461 -DLILSVYEDFGFEEIVVKLSTRPEKRVGSDEVWDHAE-----AVMTSVLKTIEEQSEGR 514

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              DI      +    A Y    +     L D++  + +     ++      FG      
Sbjct: 515 IKTDI------LPGEGAFYGPKFEY---TLKDAIGRDWQCGTTQVDFNLPERFG------ 559

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   +G+    V +     G+M     ++  ++ G   +W   +     ++     
Sbjct: 560 --AFYVDNNGEKKVPVMIHRAICGSMERFLGILIENYAGHFPLWFAPLQIVVATIT---- 613

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    +++   L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 614 --SEADSYGQEVADLLKSKGLKVETDFRNEKINYKVREHSLAKVPVILVCGMREAEERTV 671

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+   +  +  M L+E +      
Sbjct: 672 NIRRLGSKNQTPMGLDEAVAAFVEE 696


>gi|229174485|ref|ZP_04302017.1| Prolyl-tRNA synthetase [Bacillus cereus MM3]
 gi|228609045|gb|EEK66335.1| Prolyl-tRNA synthetase [Bacillus cereus MM3]
          Length = 566

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 120/267 (44%), Positives = 167/267 (62%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+A+LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQAAELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +
Sbjct: 121 EVKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG +GG  +HEF+VL++ GE  +  S    ++    E     
Sbjct: 181 YSNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSEVGEDTIAYSDT-SNYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/185 (40%), Positives = 105/185 (56%), Gaps = 3/185 (1%)

Query: 261 DVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + MG YG
Sbjct: 383 DLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTQPLIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L + G +
Sbjct: 443 IGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQEQGYE 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE+  Y 
Sbjct: 503 VLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEELQTYI 561

Query: 439 SHRFS 443
           ++   
Sbjct: 562 ANILK 566


>gi|114706249|ref|ZP_01439151.1| threonyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
 gi|114538110|gb|EAU41232.1| threonyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
          Length = 670

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 149/451 (33%), Gaps = 46/451 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L      +   G+  W   G +   ++ + +R   + 
Sbjct: 233 KNYLHMLEEAEKRDHRKLGREMDLF--HFQEEGPGVVFWHSKGWRMFQSLVSYMRRRLDG 290

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----------DRNDKAMIYGPTHEE 112
           T   E++ P +    LW  SG +  Y + M  +            + + +     P +  
Sbjct: 291 T-YEEVNAPQILDKALWETSGHWGWYQENMFAVKSAHAFTRPDDAEADHRVFAIKPMNCP 349

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSK 171
               IF+  +KSYR LP  + +     R E      G+MR R F   DA+ F    + + 
Sbjct: 350 GHVQIFKHGLKSYRELPIRYAEFGNVHRYEPSGALHGLMRVRGFTQDDAHVFCTEEQLAA 409

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                     L I+   G + I ++  + P     S E    A+     V          
Sbjct: 410 ECLRIN-DLILSIYADFGFEEIVVKLSTRPEKRVGSDENWDHAEAIMGDVL--------- 459

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
              E           SI+E   A Y    +     L D++    +     ++      FG
Sbjct: 460 --KEIEAKSGGKIRTSILEGEGAFYGPKFEY---TLRDAIGREWQCGTTQVDFNLPERFG 514

Query: 292 TKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
                   A +   + +      +     G+M     ++  ++ G   +W         +
Sbjct: 515 --------AFYIDENSEKKRPVMIHRAICGSMERFLGILLENYAGHMPLWFVPQQAVVAT 566

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +           D   ++   L   G  V  D   E+I  +     L   P+ ++ G + 
Sbjct: 567 IT------SEADDYAREVTEVLRDAGLKVETDLRNEKINYKVREHSLAKVPVIIVCGRRE 620

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             +  V I+   +  +  M LEE +   +  
Sbjct: 621 AEERAVNIRRLGSKDQTAMGLEEAVQTLAAE 651


>gi|154245583|ref|YP_001416541.1| threonyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
 gi|154159668|gb|ABS66884.1| threonyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
          Length = 660

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 145/445 (32%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
             ++  L+E   RD      ++ L      +   G   W P G      + A +R    +
Sbjct: 230 NAYIHRLEEAEKRDHRRLGREMDLF--HFQEEGPGTVFWHPKGWTLFQELVAYMRRRL-K 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-----LADRNDKAMIYGPTHEEVMTDIF 118
               E++ P +  A LW  SG +  Y + M +        ++++     P +      IF
Sbjct: 287 ADYNEVNAPQVLDAGLWETSGHWGWYKENMFKVQSAGDETKDERVFALKPMNCPGHVQIF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +     R E      G+MR R F   DA+ F    + +       
Sbjct: 347 KHGLKSYRDLPLRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHVFCTEEQMAAECLKIN 406

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L  +   G   I ++  + P     S      A+   T+V            +E  
Sbjct: 407 -DLILSTYADFGFDEIVVKLSTRPEKRVGSDAVWDHAEEVMTRVL-----------AEIE 454

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I+    A Y    +     L D++    +     ++      FG      
Sbjct: 455 AASGGRIKTGILPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG------ 505

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +  ADG+      +     G+M     ++     G   +W         ++     
Sbjct: 506 --AFYVDADGQKKTPVMIHRAICGSMERFTGILIEHFAGHFPLWLAPTQVVVATIT---- 559

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++   L   G  V  D   E+I  +     L   P+ ++ G K  ++  +
Sbjct: 560 --SDADDYAAEVAELLKAEGLRVELDVRNEKINLKVREHSLAKVPVLLVAGKKEAAERTL 617

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+   +  +   +L+EV+      
Sbjct: 618 SIRRLGSNAQTGGTLDEVVAALVDE 642


>gi|229061422|ref|ZP_04198767.1| Prolyl-tRNA synthetase [Bacillus cereus AH603]
 gi|228717845|gb|EEL69493.1| Prolyl-tRNA synthetase [Bacillus cereus AH603]
          Length = 566

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 121/267 (45%), Positives = 165/267 (61%), Gaps = 1/267 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F P L+E P DAEI SH+L+LR G + Q++ GIYS+LP G K L  V  I+REE
Sbjct: 1   MKQSMVFSPTLREVPADAEIKSHQLLLRAGFMRQNASGIYSFLPFGLKVLHKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA+E+ +P +Q+++LW ESGR+ SYG E++R+ DRN +    G THEEV+TD+ R 
Sbjct: 61  MERAGAVELLMPAMQASELWQESGRWYSYGSELMRMKDRNAREFALGATHEEVITDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y+ ++ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYSGLYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R  L    + A+SG +GG  +HEF+VL+D GE  +  S    D+    E     
Sbjct: 181 YSNIFARCSLNFRAVIADSGAMGGKDTHEFMVLSDVGEDTIAYSDT-SDYAANIEMAPVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKL 267
              + +   E+     A       E++
Sbjct: 240 ATYTKSDEAEKALEKVATPDQKAIEEV 266



 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 106/190 (55%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 378 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP SVAPF + +I +       R+    IY  L 
Sbjct: 438 MGCYGIGVSRTVAAIAEQFNDENGLVWPKSVAPFHVHVIPVNMKSDAQREMGGNIYNSLQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 498 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 556

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 557 LQTYIANILK 566


>gi|199599516|ref|ZP_03212905.1| Threonyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|258508749|ref|YP_003171500.1| threonyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|199589585|gb|EDY97702.1| Threonyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|257148676|emb|CAR87649.1| Threonyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|259650055|dbj|BAI42217.1| threonyl-tRNA synthetase [Lactobacillus rhamnosus GG]
          Length = 657

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 160/445 (35%), Gaps = 38/445 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD  +    L L    +  +   G+  W+P G      +   I +++   G  
Sbjct: 232 RRKEAAERDHRVIGRDLDLF--FVDPKVGAGLPYWMPNGATIRRVIERYIIDKEIADGYE 289

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + DL+  SG +D Y ++M    D  D  M    P +      I+  HI+SYR
Sbjct: 290 HVYTPVLANLDLYKTSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++ +  R E       ++    +  +     +  +  +  + K+    + ++ 
Sbjct: 350 ELPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQEEFKKILRLIMDVYE 409

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISL 245
              +     R                  D   T+ +   D M     S      DD+   
Sbjct: 410 DFNITDYSFRLS--------------YRDPKNTEKYFDDDEMWTRSQSMLKGAMDDLHLD 455

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    D+  +    +L  ++ +S   ++    F    ++    + T+ G 
Sbjct: 456 YYEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----NLTYVGK 504

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DG++H   M     G +  +   I    +     +P  +AP +  LI +   + +  D  
Sbjct: 505 DGEEHRPVMIHR--GIVGTMERFIAYLTEIYKGAFPTWLAPTQAVLIPVN--NDLHLDYV 560

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-- 423
            +I  ++   G  V  DD  E++G +   A     P  V+VG K ++D+ V ++      
Sbjct: 561 NRIKRQMQAAGLRVKVDDRNEKMGYKIREAQTKKIPYTVVVGDKELNDAAVSVRRYGDEH 620

Query: 424 --GIREDMSLEEVINYASHRFSNNR 446
                 +M ++ ++    +   + +
Sbjct: 621 TEEEAGNMFIDAMVAEVKNYSRDGK 645


>gi|70726243|ref|YP_253157.1| threonyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|68446967|dbj|BAE04551.1| threonyl-tRNA synthetase 1 [Staphylococcus haemolyticus JCSC1435]
          Length = 645

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 70/428 (16%), Positives = 147/428 (34%), Gaps = 32/428 (7%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
               L L T        G+  WLP G      +   I +++   G   +  P L + +L+
Sbjct: 246 IGKDLELFTNN-QLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVELY 304

Query: 81  VESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
             SG +D Y  +M      ++   M+  P +      ++ +   SYR LP    ++    
Sbjct: 305 KTSGHWDHYRDDMFPPMKLDETEEMVLRPMNCPHHMMVYNNRPHSYRELPIRIAELGTMH 364

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E       ++    +  +     + P+  K  + ++      ++   G +    R   
Sbjct: 365 RYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKDEFKRVVNMIQEVYSDFGFEDYTFRLS- 423

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISLNSIVEQWTAPYAA 258
                          D  + + +   D M     +      D++           A Y  
Sbjct: 424 -------------YRDPEDKEKYMDDDEMWNKAETMLKEAVDEMGLPYVEAIGEAAFYGP 470

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
             DV   ++  ++ + + +S   I+    F    ++      T+ G+DG++H   +   G
Sbjct: 471 KLDV---QVKTAMGKEETLSTAQID----FLLPERF----ELTYIGSDGENHRPVVIHRG 519

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           + +         +           +    +I  +N+  H     D    +   L   G  
Sbjct: 520 VVSTMERFVAFLTEETKGAFPTWLAPKQVEIIPVNVDLH----YDYARNLQDELKSQGVR 575

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E++G +   A +   P Q++VG K V +++V ++   +  +E +  +E I   
Sbjct: 576 VEIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRKYGSQDQETVEKDEFIWNL 635

Query: 439 SHRFSNNR 446
                  +
Sbjct: 636 VDEIRLKK 643


>gi|119511594|ref|ZP_01630701.1| prolyl-tRNA synthetase [Nodularia spumigena CCY9414]
 gi|119463755|gb|EAW44685.1| prolyl-tRNA synthetase [Nodularia spumigena CCY9414]
          Length = 602

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 115/240 (47%), Positives = 151/240 (62%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLRDDPADAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N T A E  +P LQ A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T +
Sbjct: 61  MNATNAQECLLPQLQPAELWKESGRWDTYTKAEGIMFSLIDRREQQLGLGPTHEEVITTV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF +     K +Y  M
Sbjct: 121 ARDMIRSYRQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHVDEVSLKETYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           + +Y  +  R GL    + A+SG IGG  S EF+VLAD GE +V  ++D   +    E  
Sbjct: 181 YQAYSNMLRRSGLAFRAVEADSGAIGGSGSTEFMVLADAGEDEVLYTEDG-KYAANVEKA 239



 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 67/200 (33%), Positives = 109/200 (54%), Gaps = 3/200 (1%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSL--PENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +  EQ+  P              ++  PE    +ARGIEVGHIF  GTKYS  MSAT+  
Sbjct: 400 NWDEQFKLPELVVDIRKARPGDRAVHDPEQTLQTARGIEVGHIFQLGTKYSQAMSATYTN 459

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G+++ + MG YG+G  R+  + +E S+D  GIIWP ++AP+   +      D    + 
Sbjct: 460 EQGEENPLFMGCYGVGVSRLAQSAVEQSYDKDGIIWPVAIAPYHAIVTIPNIKDAQQVEI 519

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+Y +L+K G +   DD  E+ G +F  ADL+G P +++ G + +++ KVE+  R T 
Sbjct: 520 AQKLYTQLNKAGVETLLDDRDERAGVKFKDADLIGIPYRIVTG-RAINNGKVEVVKRATR 578

Query: 425 IREDMSLEEVINYASHRFSN 444
             +++++EEV+N        
Sbjct: 579 ETQEIAIEEVVNTLQQWIKT 598


>gi|332705120|ref|ZP_08425202.1| prolyl-tRNA synthetase, family II [Lyngbya majuscula 3L]
 gi|332356070|gb|EGJ35528.1| prolyl-tRNA synthetase, family II [Lyngbya majuscula 3L]
          Length = 603

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 123/276 (44%), Positives = 166/276 (60%), Gaps = 7/276 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L+E+P +AEI SHKL+LR G I +   GIY++LP+  + L  V+ I+REE
Sbjct: 1   MRLSQMLLVTLREDPVEAEIPSHKLLLRAGYIRRIGSGIYAYLPMMWRVLKKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA E  +P LQ ++LW ESGR+D+Y K    M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MDATGAQECLLPQLQPSELWKESGRWDTYTKAEGIMFALIDRQKRELGLGPTHEEVITTV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  K +Y  M
Sbjct: 121 AKDMIRSYRQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHTDHESLKKTYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  +F R GL+   + A+SG IGG  S EF+VLAD GE ++  ++D   +    E  
Sbjct: 181 DQAYRNMFSRSGLEFRAVEADSGAIGGSGSQEFMVLADAGEDEILYTEDG-KYSANVEKA 239

Query: 238 ---DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                D   S  +  E+   P  +T D   + L  S
Sbjct: 240 VSLPPDLEPSPYNTYEKLETPNTSTIDTLCQFLKCS 275



 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 97/173 (56%), Gaps = 1/173 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     SARGIEVGHIF  GTKYS  M AT+    G++  + MG YG+G  R+  A +E 
Sbjct: 427 PNQTLKSARGIEVGHIFQLGTKYSSAMGATYTSEQGEEIPLCMGCYGVGVSRLAQAAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GIIWP ++AP+ + +      D     A EK+Y +L++ G +   DD  E+ G +
Sbjct: 487 SYDKDGIIWPVAIAPYHVIITIPNVGDTQQMAAAEKLYTQLNEAGIETLLDDRNERAGVK 546

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           F  ADL+G P +++ G + + D KVE+  R T    ++SLEEV+         
Sbjct: 547 FKDADLIGIPYRIVTG-RSLKDGKVEVVERATHKSTELSLEEVLPTLKQWIDT 598


>gi|297545340|ref|YP_003677642.1| prolyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843115|gb|ADH61631.1| prolyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 570

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 116/255 (45%), Positives = 161/255 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  IIREE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+ KM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDVDWEGLDKSFEKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  +    +        +     
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISSVGEAVIAYCDNCGYAANEEKAECLI 240

Query: 241 DIISLNSIVEQWTAP 255
           +   +  ++ +    
Sbjct: 241 NQEIVEEMLPKEKVY 255



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/190 (39%), Positives = 103/190 (54%), Gaps = 3/190 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P         RGIEVGHIF  GTKYS  + A +   +G +  + MG
Sbjct: 381 VVADIKNVIEGDKCPRCGSPLKIDRGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIVMG 440

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R VAA+IE +HD KGIIWP SVAP+ + ++ +   ++      E IYA L K 
Sbjct: 441 CYGIGINRTVAAIIEQNHDDKGIIWPMSVAPYHVIIVPVNVSNEAQNGVAEDIYAALQKE 500

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD   + G +F  ADLLG P+++ VG K VSD  VEIK R     E++ + +V+
Sbjct: 501 GIEVLIDDRDLRAGVKFNDADLLGIPIRITVGKK-VSDGIVEIKLRENEEAEEVKISDVV 559

Query: 436 NYASHRFSNN 445
               +     
Sbjct: 560 EKVKNIIKEK 569


>gi|312795091|ref|YP_004028013.1| Prolyl-tRNA synthetase [Burkholderia rhizoxinica HKI 454]
 gi|312166866|emb|CBW73869.1| Prolyl-tRNA synthetase (EC 6.1.1.15) [Burkholderia rhizoxinica HKI
           454]
          Length = 589

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 122/224 (54%), Positives = 166/224 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAEI SH+LM+R GMI + + GIY+++P+G +++  V AI+REE
Sbjct: 12  MKASRFFIGTLKEAPADAEIVSHQLMVRAGMIRRVAGGIYNYMPIGLRSIRKVEAIVREE 71

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q A+LW ES R++ YG E+LR+ DR+D+  + GPTHEEV+TDI R 
Sbjct: 72  MNRAGAVELLMPAVQPAELWQESSRWEQYGPELLRVKDRHDRDFVVGPTHEEVVTDIARK 131

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR +P  FYQ+Q KFRDE+RPRFGVMR REF+MKDAYSFD    G + SY KM+ +
Sbjct: 132 EIKSYRQMPVNFYQVQTKFRDEIRPRFGVMRGREFIMKDAYSFDRDRAGLQLSYQKMYDA 191

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           Y+RIF RLGL+   + A++G IGG  SHEF V+A TGE  +   
Sbjct: 192 YVRIFTRLGLEFRAVAADNGAIGGTGSHEFHVIAATGEDAIAYC 235



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/192 (35%), Positives = 101/192 (52%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N +  D  P    +    RGIEVGH+F  GTKYS  M ATF   +GK   +
Sbjct: 393 PEPEVADLRNVRKGDPSPDGRGELDLCRGIEVGHVFQLGTKYSEAMGATFLDENGKPAPM 452

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D +GIIWP+++APF + L  +        R+   K+Y  
Sbjct: 453 MMGCYGIGITRILGAAIEQNFDERGIIWPEAIAPFHLVLCPMGYERSDAVREQAHKLYDE 512

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD GE+ G  FA  +L+G P ++++G + + + K+E + R       + L
Sbjct: 513 LLGAGMDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKEGKIEYQGRRDVEPTLLPL 572

Query: 432 EEVINYASHRFS 443
           E+   +   R  
Sbjct: 573 EQAAAWVVERVR 584


>gi|295099750|emb|CBK88839.1| threonyl-tRNA synthetase [Eubacterium cylindroides T2-87]
          Length = 391

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 74/416 (17%), Positives = 141/416 (33%), Gaps = 37/416 (8%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + +++ G+  +LP G    + +     EE  + G   +  P + S +LW  SG ++ Y +
Sbjct: 6   VSEYAPGMPIFLPNGMILRNILEQFWYEEHTKAGYQFIKTPIMMSKELWETSGHWEHYKE 65

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVM 150
            M      +D+     P +      ++ S + SY+ LP+   ++    R E      G+ 
Sbjct: 66  NMYTTM-VDDREFAIKPMNCPGALLVYNSSLHSYKELPYRIGELGQVHRHEASGALNGLF 124

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+   +TP+  +     +     RI+   GL        + P         
Sbjct: 125 RVRTFTQDDAH-LFVTPDQIESEVKNVLGLIDRIYSVFGLPYDI-ELSTRP--------- 173

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                  E+    S++       +             +     A Y    D+H   + DS
Sbjct: 174 -------ESGYIGSEEIWQKSEEALANACIHAGKEYKVNPGDGAFYGPKLDIH---IKDS 223

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVI 329
           L    +     +++     FG         T+   DG       +     G++     ++
Sbjct: 224 LGRVWQCGTIQLDMNLPERFG--------CTYVDKDGSKKTPVMLHRVIYGSIERFIGIL 275

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                G   +W           + I  H +   +  +K+   L   G  V  DD  E++G
Sbjct: 276 IEHFAGHFPLWLA-----PRQFVVIPVHQEKHLEYAQKVVKALQDAGMRVELDDRNEKLG 330

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +   A +   P Q++VG     +  V I+       + M+L E +          
Sbjct: 331 YRVREAQMSKVPYQIVVGDGEAENETVTIRQSGKKESKTMALNEALEKFVKEVEEK 386


>gi|226321417|ref|ZP_03796944.1| threonyl-tRNA synthetase [Borrelia burgdorferi Bol26]
 gi|226233213|gb|EEH31965.1| threonyl-tRNA synthetase [Borrelia burgdorferi Bol26]
          Length = 581

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 155/443 (34%), Gaps = 37/443 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L + +E   RD      +L L +    +   G+  + P G K    +    REE ++
Sbjct: 172 RSYLNLREEIKKRDHRKLGKELDLFSIH-EEIGPGLVFFHPNGAKIRALIEDFWREEHSK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y   M    + +       P +      I+ +   
Sbjct: 231 NGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYNTGKH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G+MR+R F   DA+      +       ++    +
Sbjct: 291 SYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHIICTHSQVLDE-IKEVLRFAI 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G  +      + P                  +   +    +  +        D 
Sbjct: 350 YMWSKFGFSNPKAYLSTKP-----------------DKSVGNDSDWEMSLKVLKETLSDF 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I +   A Y    D+   K+ DSL    ++S    +    F    ++++  +A  
Sbjct: 393 EVPYEIDKGGGAFYGPKIDL---KIVDSLEREWQMSTIQFD----FNLPERFNMTYTAE- 444

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +     +    +G++     ++   + G   +W   V    I + NI        
Sbjct: 445 --DGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLWLSPVQVVIIPVNNI------VE 496

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K++ +    G  +  D+   ++ ++         P   I+G +  ++ ++ I+ R 
Sbjct: 497 DYAIKVFNKFKNEGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREATEERISIRTRT 556

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 M L+E + +   +  + 
Sbjct: 557 NEQINGMKLDEALKFILFKIRDK 579


>gi|224476386|ref|YP_002633992.1| prolyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420993|emb|CAL27807.1| putative prolyl-tRNA synthetase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 566

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 113/237 (47%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK F+P ++E P +AE  SH+L+L+ G+I Q + G+YS+LPL  + L+ + AI+REE
Sbjct: 1   MRQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGVYSYLPLATRVLNKITAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ ++LW ESGR+D+YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQPSELWEESGRWDAYGSELMRLTDRNGRQFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +YN+M+ +
Sbjct: 121 EVKSYKQLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDETYNQMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S++  D+    E  
Sbjct: 181 YSRIFKRAGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVYSEN-SDYAANIEKA 236



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 106/196 (54%), Gaps = 7/196 (3%)

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  VE++            E L D   E K   A GIEVG +F  GTKYS  M+ATF   
Sbjct: 374 DFNVEEFGDFRFILE---GEPLSDGSGEAK--FAEGIEVGQVFKLGTKYSETMNATFLDN 428

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            GK   + MG YGIG  R ++A++E + D  GI+WP SV PF + LI I       R+  
Sbjct: 429 QGKAKPLIMGCYGIGVSRTLSAIVEQNSDENGIVWPKSVTPFDLHLITINPKKDDQRELG 488

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           ++IYA L +   +V +DD  E+ G +F  ADL+G P++++VG +   +  VE+K R  G 
Sbjct: 489 DQIYAELQQS-YEVLYDDRKERAGVKFNDADLIGLPIRIVVGKR-ADEGIVEVKRRDNGE 546

Query: 426 REDMSLEEVINYASHR 441
            E++ +  + +Y  + 
Sbjct: 547 SEEVEVSNLASYIDNL 562


>gi|309811262|ref|ZP_07705053.1| threonine--tRNA ligase [Dermacoccus sp. Ellin185]
 gi|308434802|gb|EFP58643.1| threonine--tRNA ligase [Dermacoccus sp. Ellin185]
          Length = 665

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 69/442 (15%), Positives = 139/442 (31%), Gaps = 30/442 (6%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +        G+  + P G      +   +R      G
Sbjct: 246 YLERLAEAEKRDHRKLGAELDLFS-FPENIGPGLPVFHPKGGIIKREMEDYVRRRHIEEG 304

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DL+  SG    Y   M    D + +       +  +  +IFRS  +SY
Sbjct: 305 FSYVGTPHIAKEDLFYTSGHLPYYADGMFPPLDVDGQNYRLKAMNCPMHNEIFRSRGRSY 364

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP  F++    +RDE       +     + +D     +TPE +      +    L + 
Sbjct: 365 RELPLRFFEFGTVYRDEKSGVLSGLTRVRMITQDDSHSYVTPEQAPGEIKHLLDFILGLL 424

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G+    +   +  + GD   +FI   +             D      +    +    
Sbjct: 425 RDFGMNDFYLELSTRDVDGDKKDKFIGTDEQ-----------WDIATKVLSDVALESGLE 473

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                   A Y       + +  D++    ++S    +      FG          ++ A
Sbjct: 474 LVPDPGGAAFYGPKI---SVQARDAIGRTWQMSTIQYDFNQPARFG--------LEYQAA 522

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG       + S   G++     V+   + G    W   V    + +       +   D 
Sbjct: 523 DGSRQQPVMVHSAKFGSIERFLGVLVEHYAGAFPAWLAPVQVLAVPVA------EEYYDY 576

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L + G  V  D   ++   +   A     P  +I G +   +  V  + R   
Sbjct: 577 LQDVAMKLREAGVRVEVDMSDDRFPKKIRNASKSKAPFILIAGEEDRDNGAVSFRFRDGS 636

Query: 425 IREDMSLEEVINYASHRFSNNR 446
            +  + + + I   +   +  +
Sbjct: 637 QKNGVPVADAIAEITRVITERQ 658


>gi|240143521|ref|ZP_04742122.1| threonine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257204557|gb|EEV02842.1| threonine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|291540396|emb|CBL13507.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Roseburia
           intestinalis XB6B4]
          Length = 591

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 152/434 (35%), Gaps = 33/434 (7%)

Query: 16  RDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD      ++ L   M      +G+  +LP G      +   I+ ++ + G + +  P +
Sbjct: 181 RDHRKIGKEMHLF--MSDDLVGRGLPMFLPKGYTVWQELENYIKAKERKLGYLHVMTPCV 238

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            + +L+  SG +D Y + M    +   ++ +  P +      I+ + + SY++LP    +
Sbjct: 239 GTVNLYKTSGHWDHYKENMFPAMEVEGESFVLRPMNCPHHMMIYANRMHSYKDLPIRIGE 298

Query: 135 IQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           I   FR E      G+ R R F   DA+   +TPE  +  + K+       +    +   
Sbjct: 299 IAHDFRFEASGTLKGIERGRHFCQNDAH-LFVTPEQIESEFAKVVELIFDTYKDFNITDY 357

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                          + +   D  E          +    +     DDI    +      
Sbjct: 358 RCVLSLRD-----PEDKVKYHDDDEM--------WNNAENALRKVLDDIGIEYTEEIGEA 404

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           A Y    DV    +  ++     +S   ++    F    K+    + ++  +DG      
Sbjct: 405 AFYGPKLDV---NVKPAIGNEYTLSTCQLD----FCLPAKF----NLSYIDSDGTKKTPV 453

Query: 314 M-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           +     +G++    A I    +      P  +AP +  ++ +K  D+        +Y  L
Sbjct: 454 VLHRAILGSLDRFMAYIL---EETKGNLPLWLAPVQAKILPVKNEDEELNAYSHDLYKYL 510

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G  V  D+  E++G +   A +   P  +++G    +D  V  +         +S E
Sbjct: 511 DDNGIRVEIDERNEKLGYRIREAQMEKVPYLLVLGKNEAADGTVSYRLHGEQNSTTVSRE 570

Query: 433 EVINYASHRFSNNR 446
           + +          +
Sbjct: 571 DFLALLKEDIRTKK 584


>gi|328955488|ref|YP_004372821.1| prolyl-tRNA synthetase [Coriobacterium glomerans PW2]
 gi|328455812|gb|AEB07006.1| prolyl-tRNA synthetase [Coriobacterium glomerans PW2]
          Length = 576

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 107/227 (47%), Positives = 153/227 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  + P L+E+P +A++ SH+L+LR GMI + + GIYS+LPL  ++L  +  I+R+E
Sbjct: 5   MKMSNLYAPTLKEDPAEADLVSHRLLLRAGMIRKMASGIYSYLPLAWRSLKKIEEIVRDE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E  +P L  A+LW  SGR+D+YG E++R+ DR+ +    GPTHEE +TD+ ++
Sbjct: 65  MDAIGAQECLLPILTDAELWRLSGRWDAYGPELMRIVDRHQRQFALGPTHEETVTDLVKN 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP + YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  T    +  Y  M  +
Sbjct: 125 ELASYRQLPVSLYQIQTKFRDEMRPRFGLMRGREFIMKDAYSFSATQASLQECYEDMKAA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RI  R GL ++P+ A+SG IGGD S E++ LAD+GE  +      
Sbjct: 185 YGRICERCGLAALPVAADSGQIGGDTSVEYMALADSGEASLVYCDSC 231



 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 82/191 (42%), Positives = 111/191 (58%), Gaps = 2/191 (1%)

Query: 258 ATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+      D  P    +   ARGIEV  +F  GTKYSLPM ATF    G+   + MG
Sbjct: 381 EWADLVTVVAGDPCPVCGEELSGARGIEVSQVFQLGTKYSLPMGATFTDEAGRTQPMLMG 440

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG+G  R +AAV+E  HD  GIIWP SVAP+++S++ +    Q C  A +++   LS  
Sbjct: 441 CYGVGISRTLAAVVEQHHDEAGIIWPVSVAPYEVSIVLLDTKLQACVAAGDRLAFELSAG 500

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G +FA  DL+GFP Q+IVG + ++   VEIK R TG R D++L++  
Sbjct: 501 GIDVVLDDRAERPGVKFADNDLMGFPYQIIVGKRGIAAGTVEIKDRATGERVDVALDDAS 560

Query: 436 NYASHRFSNNR 446
           NYA  R    R
Sbjct: 561 NYAVERIRRAR 571


>gi|157363113|ref|YP_001469880.1| prolyl-tRNA synthetase [Thermotoga lettingae TMO]
 gi|166980167|sp|A8F3T2|SYP_THELT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157313717|gb|ABV32816.1| prolyl-tRNA synthetase [Thermotoga lettingae TMO]
          Length = 575

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 103/251 (41%), Positives = 157/251 (62%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ + P L+E P DAE+ SH L+ R G I + + G+YS+LPL ++ L  + AI+R+E
Sbjct: 1   MKFSQLYAPTLKEAPADAEVISHALLYRAGFIRKIAAGVYSYLPLAKRTLSKIEAIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E+S+P +Q A+LW  +GR+D YG EM++L DR+++    GPTHEEV T + + 
Sbjct: 61  MNEIGAQEVSMPVIQPAELWKTTGRWDDYGPEMMKLKDRHERDFTLGPTHEEVFTHMVKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQI  K+RDE+RPRFG++R+REF+MKD YSF  + +    +Y     +
Sbjct: 121 ELRSYKQLPLFLYQIGPKYRDEIRPRFGLLRAREFIMKDGYSFHDSDQSLNETYEACKNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  ++GLK I + A SG IGG+ SHEF+  A  GET +   +    +    E   + 
Sbjct: 181 YRKITEKIGLKYIIIEAASGAIGGNESHEFVSFAPVGETNLLKCEKC-GYSSNDEQAPYR 239

Query: 241 DIISLNSIVEQ 251
                +  +E+
Sbjct: 240 GKYHRDEEIEK 250



 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 66/192 (34%), Positives = 96/192 (50%), Gaps = 5/192 (2%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   +  D  P        ++GIE+  IF  GTKYS  M+A +    G+     MG YG
Sbjct: 382 DLRVVQPNDPCPVCGEQLTGSKGIEIAQIFKLGTKYSKAMNALYMDDKGEVKPFIMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G  R +AA++E  HD  GI+WP SVAPF++ +  + A DQ  R   +K+Y  L     D
Sbjct: 442 WGISRTMAAIVEQLHDEDGILWPRSVAPFELIITVVSAQDQDQRIFAQKLYNSLLSSEID 501

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS--LEEVIN 436
           V  DD     G +F  ADL+GFPL++ VG K + +  VE+K R +     +S  L ++ +
Sbjct: 502 VLLDDRDISPGMKFKDADLIGFPLRITVG-KSLKEGMVELKSRNSSKSIKVSAELSKINS 560

Query: 437 YASHRFSNNRPV 448
                     P 
Sbjct: 561 VLFKMLEEYNPH 572


>gi|259500519|ref|ZP_05743421.1| threonine-tRNA ligase [Lactobacillus iners DSM 13335]
 gi|302191209|ref|ZP_07267463.1| threonyl-tRNA synthetase [Lactobacillus iners AB-1]
 gi|309807138|ref|ZP_07701115.1| threonine--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|309810241|ref|ZP_07704086.1| threonine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
 gi|259167903|gb|EEW52398.1| threonine-tRNA ligase [Lactobacillus iners DSM 13335]
 gi|308166489|gb|EFO68691.1| threonine--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|308169513|gb|EFO71561.1| threonine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
          Length = 643

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 154/434 (35%), Gaps = 36/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      +   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y ++M    D  D  M    P +      I+  HI+SYR LP    
Sbjct: 296 MNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++    +  
Sbjct: 356 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVELDQVQSE-FAKILKLIMEVYRDFDITD 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 415 YYFRLS-------------YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEAEGE 461

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++    + ++ G DG++H  
Sbjct: 462 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----NLSYVGKDGEEHRP 510

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G M    A +   + G    W        + +  I  ++    +  + +  +
Sbjct: 511 VMVHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PLQVKIIPVNNDAHGEYAQNVKDQ 565

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K+G     D   E++G +   A     P  +++G   +  + V ++   +  +E  +L
Sbjct: 566 LMKLGFRAEVDFRNEKLGYKIREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESKAL 625

Query: 432 EEVINYASHRFSNN 445
            E ++  S   ++ 
Sbjct: 626 SEFVSELSADVASY 639


>gi|320536876|ref|ZP_08036869.1| threonyl-tRNA synthetase [Treponema phagedenis F0421]
 gi|320146259|gb|EFW37882.1| threonyl-tRNA synthetase [Treponema phagedenis F0421]
          Length = 583

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 152/442 (34%), Gaps = 38/442 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L++   RD         L    + + + G   W P G      V   +RE+    G
Sbjct: 172 YLAMLEDAEKRDHRKLGKSFGLF--HLDEENPGQIFWHPNGWALYLLVQNYVREKIKADG 229

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW  SG +  Y + M  + +   +     P +     +IF+  IKSY
Sbjct: 230 YLEVKTPFVMPQSLWERSGHWAKYRENMF-ITESEKRLFALKPMNCPGHIEIFKQGIKSY 288

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G++R R F+  DA+ F  T         K       +
Sbjct: 289 RDLPLRLAEFGSCTRNEPSGSLHGILRVRGFVQDDAHIFC-TEAQISSEVKKFCALLKNM 347

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     +               +V   T   +        D    +      D   
Sbjct: 348 YADFGFAEDSI---------------LVKFSTRPEKRVGDDATWDRAEKALADACKDAGL 392

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    +     L DSL    +     ++        +K    ++A + G
Sbjct: 393 EYEVAEGEGAFYGPKLEF---TLIDSLGREWQCGTIQVDY----QLPSK--ERLNAEYIG 443

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D + H    +    +G++     ++   + G    W   +    I +           D
Sbjct: 444 EDNQKHNPVMLHRAALGSLERFIGILIEHYAGAFPPWLSPLQAVVIPVAP------TFND 497

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK    L+  G  V  D   +++ ++         P Q+IVG K  ++  + ++    
Sbjct: 498 YAEKTAKDLAAQGLRVKADIDTDRMNAKIRKYQEQRIPYQLIVGEKEAANGSLAVRIHH- 556

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G ++ M+ E  +N+   + + +
Sbjct: 557 GDQKTMTTEAFVNFIKEKIATH 578


>gi|167756637|ref|ZP_02428764.1| hypothetical protein CLORAM_02174 [Clostridium ramosum DSM 1402]
 gi|237733925|ref|ZP_04564406.1| threonyl-tRNA synthetase [Mollicutes bacterium D7]
 gi|167702812|gb|EDS17391.1| hypothetical protein CLORAM_02174 [Clostridium ramosum DSM 1402]
 gi|229383006|gb|EEO33097.1| threonyl-tRNA synthetase [Coprobacillus sp. D7]
          Length = 577

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 67/442 (15%), Positives = 156/442 (35%), Gaps = 40/442 (9%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E  R D +    +L L   M+ +++ G+  +LP G    + +     EE  + G 
Sbjct: 173 LELLEEAKRRDHKKLGKELGLF--MMSEYAPGMPFFLPKGMILRNTLEQFWYEEHAKEGY 230

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P + S +LW  SG +++Y ++M      +D+     P +      ++++ + SY+
Sbjct: 231 EFIKTPIMMSRELWETSGHWENYKEDMYTSM-VDDREFAIKPMNCPGSLLVYKNSLHSYK 289

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++    R E      G+ R R F   DA+ + +TP+  +    ++     R++
Sbjct: 290 DLPLRMGELGQVHRHEASGALNGLFRVRTFTQDDAHIY-MTPDQIEGEIIRLINFIDRVY 348

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             L L        + P                E +        +    +           
Sbjct: 349 GSLNLSYEI-ELSTRP----------------EKKYIGDLAIWEKSEAALAAACKAAGKD 391

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             +     A Y    D H   + DSL    +     +++                T+   
Sbjct: 392 YKVNPGDGAFYGPKLDFH---VKDSLGRVWQCGTIQLDMNLP--------ERFDITYIDD 440

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            G+    V +     G++     ++     G   +W        + +  +  +++   D 
Sbjct: 441 KGEKVRPVMLHRVIFGSIERFIGILIEHFAGVFPLWLA-----PVQVKVLPVNNEYHLDY 495

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++   L   G  V  D   E++G +     +   P  +++G+    +  V  +     
Sbjct: 496 AKEVTELLKDKGFKVELDAREEKLGYRIREGQMEKVPYLLVLGNNERDEKTVTYRKHGEQ 555

Query: 425 IREDMSLEEVINYASHRFSNNR 446
            +  +  ++ +   + +  + +
Sbjct: 556 KQITVPFDDFVAMLNQQIVDKK 577


>gi|99035129|ref|ZP_01314912.1| hypothetical protein Wendoof_01000242 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 536

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 155/442 (35%), Gaps = 40/442 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
             +L  L+E   RD    +  + L    I + + G   W   G    + + + IR++   
Sbjct: 130 NAYLECLKEAEKRDHRKIAKDMDLF--HIQEEAVGQVFWHEQGYILYNVLESYIRKKLIN 187

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L S +LW  SG +D + + M  + +  +K +   P +      IF SH +
Sbjct: 188 NGYFEVKTPILVSKELWERSGHWDKFRENMFIVDESENKKLAIKPMNCPCHVQIFNSHTR 247

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F +  + +  +         
Sbjct: 248 SYRDLPIRMAEFGTCHRNESSGSLHGLMRVRGFTQDDAHIFCMEEQVNSETIKF-CDLLK 306

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++  LG   I ++    P     + E                   D    +      + 
Sbjct: 307 EVYSELGFNEISVKFSDRPDIRAGNDE-----------------VWDRAEKALLEAVKEA 349

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    +     L D++  N +     ++       G        A +
Sbjct: 350 GLSYKLNPGEGAFYGPKLEF---VLKDAIGRNWQCGTLQVDFILPERLG--------AFY 398

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG  H+   +    +G       ++  ++ GK  +W        +++ N        
Sbjct: 399 IGADGHKHHPVMLHRAILGTFERFIGILIENYAGKFPVWLAPTQLAILTITN------EA 452

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                +I   L + G  V  D   E+I  +  +      P+  IVG   V+   V +++ 
Sbjct: 453 DGYATEISNILKEQGVRVKTDLTNEKISYKIRLHSSNKVPILWIVGKNEVTSKTVSVRNL 512

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            +  +E  SLE+         +
Sbjct: 513 GSERQESFSLEKANESLLKSIN 534


>gi|116495184|ref|YP_806918.1| threonyl-tRNA synthetase [Lactobacillus casei ATCC 334]
 gi|122263399|sp|Q037Z6|SYT_LACC3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116105334|gb|ABJ70476.1| Ser-tRNA(Thr) hydrolase [Lactobacillus casei ATCC 334]
          Length = 657

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 164/446 (36%), Gaps = 40/446 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +    D  +    L L    +  +   G+  W+P G      +   I +++   G  
Sbjct: 232 RRQEAAEHDHRVIGRDLDLF--FVDPKVGAGLPYWMPNGATIRRVIERYIIDKEIADGYE 289

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + DL+  SG +D Y ++M    D  D  M    P +      I+  HI+SYR
Sbjct: 290 HVYTPVLANLDLYKTSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++
Sbjct: 350 ELPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQEE-FKKILRLIMDVY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIIS 244
               +     R                  D   T+ +   D M     S      DD+  
Sbjct: 409 EDFNITDYSFRLS--------------YRDPKNTEKYFDDDEMWTRSQSMLKGAMDDLKL 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    D+  +    +L  ++ +S   ++    F    ++    + T+ G
Sbjct: 455 DYYEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----NLTYVG 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG++H   M     G +  +   I    +     +P  +AP +  LI +   + +  D 
Sbjct: 504 KDGEEHRPVMIHR--GIVGTMERFIAYLTEIYKGAFPTWLAPTQAVLIPVN--NDLHLDY 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT- 423
             +I  ++   G  V  DD  E++G +   A     P  V+VG K ++D+ V ++     
Sbjct: 560 VNRIKKQMLVAGLRVKVDDRNEKMGYKIREAQTKKIPYTVVVGDKELNDAAVSVRRYGDE 619

Query: 424 ---GIREDMSLEEVINYASHRFSNNR 446
                  +M ++ ++    +   + +
Sbjct: 620 HTEEEAGNMFIDALVAEVKNYSRDGK 645


>gi|295397484|ref|ZP_06807567.1| threonine--tRNA ligase [Aerococcus viridans ATCC 11563]
 gi|294974284|gb|EFG50028.1| threonine--tRNA ligase [Aerococcus viridans ATCC 11563]
          Length = 656

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 165/445 (37%), Gaps = 36/445 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+   +E   RD      +L +   M++ +   G+  WLP G      +   I +++   
Sbjct: 243 FIKQREEAKERDHRKLGKELDIF--MVNPEVGSGLPFWLPKGATIRRIIERYIIDKEVSL 300

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D   ++  P +      ++++ I 
Sbjct: 301 GYEHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEQLVLRPMNCPHHMMVYKNDIH 360

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR  P    ++ +  R E      G+ R RE  + DA+ F   P+  K  + ++     
Sbjct: 361 SYREFPVRIAELGMMHRYEKSGALSGLQRVREMTLNDAHIFVR-PDQIKEEFTRVIELIK 419

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDD 241
           +++    +     R                  D   T  +   D M     +      DD
Sbjct: 420 QVYDDFNITDYRFRLS--------------YRDPNNTDKYFDDDEMWEKAQAMLKEAMDD 465

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +           A Y    DV   ++  +L   + +S   ++    F    ++      T
Sbjct: 466 LGLEYFEAIGEAAFYGPKLDV---QMKTALGNEETMSTVQLD----FLLPERFD----LT 514

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + G DG+D +  +  +  G +  +   +    +     +P  +AP +  LI +   D+  
Sbjct: 515 YVGQDGQDTHRPVVIHR-GVVSTMERFVAYLIEEYKGAFPTWLAPVQAKLIPVN--DEAH 571

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E+I  R+   G  V  D+  E++G +   A     P Q++ G   ++++ V ++  
Sbjct: 572 GEHVEEIRRRMKAAGMRVEVDNRNEKMGYKIREAQTQKIPYQLVFGDNEIAENTVTVRRY 631

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +     M  +E +          +
Sbjct: 632 GSKETLSMPFDEFLAQLEQDIKEYK 656


>gi|86137404|ref|ZP_01055981.1| threonyl-tRNA synthetase [Roseobacter sp. MED193]
 gi|85825739|gb|EAQ45937.1| threonyl-tRNA synthetase [Roseobacter sp. MED193]
          Length = 648

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 143/442 (32%), Gaps = 45/442 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W P G K    +   +R  Q R
Sbjct: 234 KAHLHMLEEAAKRDHRKLGREMNLY--HMQEEAPGQVFWHPNGWKIYTTLQDYMRRMQER 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G +E++ P +    LW  SG +D Y + M  +       R        P +      +F
Sbjct: 292 DGYVEVNTPQVVDRKLWEASGHWDKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVQVF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D + F    +    +  K 
Sbjct: 352 NQGLKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDGHIFCAEDQIESET-AKF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                +++  LG  +  ++  + P     S E                   D    +   
Sbjct: 411 IAFLSKVYADLGFHNWTIKLSTRPEKRIGSDE-----------------SWDLVEKALGD 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     ++E   A Y    +     L D++  N +     ++              
Sbjct: 454 ACKAAGYEYELLEGEGAFYGPKLEF---TLTDAIGRNWQCGTLQVDPNLP--------ER 502

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A F GADG  H    +    +G+      ++   H GK   W         S+     
Sbjct: 503 LEANFIGADGNKHRPFMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIT---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++   L   G     D   E+I  +     L   P+ + +G + V +  V
Sbjct: 559 --SDADDYVHEVVTELQAAGVRAEADIRNEKINYKVREHSLGKVPVILAIGHREVEERTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYA 438
            I+          SLE V    
Sbjct: 617 SIRRLGEKQTRVDSLENVTKAL 638


>gi|309803316|ref|ZP_07697413.1| threonine--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|308164824|gb|EFO67074.1| threonine--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
          Length = 643

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 154/434 (35%), Gaps = 36/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      +   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y ++M    D  D  M    P +      I+  HI+SYR LP    
Sbjct: 296 MNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++    +  
Sbjct: 356 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVELDQVQSE-FAKILKLIMEVYRDFDITD 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 415 YYFRLS-------------YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEAEGE 461

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++    + ++ G DG++H  
Sbjct: 462 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----NLSYVGKDGEEHRP 510

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G M    A +   + G    W        + +  I  ++    +  + +  +
Sbjct: 511 VMVHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PLQVKIIPVNNDAHGEYAQNVKDQ 565

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K+G     D   E++G +   A     P  +++G   +  + V ++   +  +E  +L
Sbjct: 566 LMKLGFRAEVDFRNEKLGYKIREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESKAL 625

Query: 432 EEVINYASHRFSNN 445
            E ++  S   ++ 
Sbjct: 626 SEFVSELSADVASY 639


>gi|71899288|ref|ZP_00681449.1| Proline--tRNA ligase [Xylella fastidiosa Ann-1]
 gi|71730914|gb|EAO32984.1| Proline--tRNA ligase [Xylella fastidiosa Ann-1]
          Length = 303

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 113/223 (50%), Positives = 151/223 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DAE+ SH+LMLR GMI + + G+Y+W PLG + L  V AI+R+E
Sbjct: 1   MRLSEFHLHTTKEIPADAELVSHRLMLRAGMIRKLASGLYTWSPLGLRVLRKVEAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+EM +PT+Q  +LW ES R++ +G ++L++ DR      Y PT EE +TD  R 
Sbjct: 61  MNRAGAVEMLLPTIQPRELWEESERWEKFGSQLLKIKDRKQAEYCYSPTAEEAVTDYVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L+       Y  M  +
Sbjct: 121 ELTSYKQLPVNLYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLSDADLVREYENMRAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y RIF RLGL+   ++A+SG IGGD S EF V+AD+GE  +  
Sbjct: 181 YTRIFTRLGLEFRSVQADSGAIGGDASQEFHVIADSGEDVLAF 223


>gi|284051766|ref|ZP_06381976.1| prolyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 601

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 114/240 (47%), Positives = 152/240 (63%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   G+Y++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPTEAEIPSHKLLLRAGYIRRIGSGVYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P +Q ++LW ESGR+D+Y K    M  L DR D+++  GPTHEEV+T +
Sbjct: 61  MNATGAQECLLPQVQPSELWKESGRWDTYTKAEGIMFSLKDRRDRSLALGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF  + +  K +Y  M
Sbjct: 121 ARDMIRSYQQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTSEDSLKQTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  I  R GL    + A+SG IGG  S EF+VLAD GE +V  + D   +    E  
Sbjct: 181 DRAYRNILRRCGLDFCAVEADSGAIGGSGSQEFMVLADAGEDEVLYTPDG-KYAANVEKA 239



 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 97/172 (56%), Gaps = 1/172 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     SARGIEVGHIF  GTKYS  M AT+    G+D  + MG YG+G  R+  A +E 
Sbjct: 428 PSQTLESARGIEVGHIFQLGTKYSQAMGATYTSETGEDLPLVMGCYGVGVSRLAQAAVEQ 487

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S++  GIIWP ++AP+ + +      D       +++Y++L++ G +   DD  E+ G +
Sbjct: 488 SYNKDGIIWPVAIAPYHVIITVPNVSDNQQMAIAQQLYSQLNQAGVETLLDDRNERAGVK 547

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F  ADL+G P +++ G + +   KVE+  R      ++ +E+V++    + S
Sbjct: 548 FKDADLVGIPYRIVTG-RAIKSGKVELVQRADHESSEVPIEQVVSLLQQKIS 598


>gi|209525764|ref|ZP_03274300.1| prolyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209493737|gb|EDZ94056.1| prolyl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 601

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 114/240 (47%), Positives = 152/240 (63%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   G+Y++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPTEAEIPSHKLLLRAGYIRRIGSGVYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P +Q ++LW ESGR+D+Y K    M  L DR D+++  GPTHEEV+T +
Sbjct: 61  MNATGAQECLLPQVQPSELWKESGRWDTYTKAEGIMFSLKDRRDRSLALGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF  + +  K +Y  M
Sbjct: 121 ARDMIRSYQQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTSEDSLKQTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  I  R GL    + A+SG IGG  S EF+VLAD GE +V  + D   +    E  
Sbjct: 181 DRAYRNILRRCGLDFCAVEADSGAIGGSGSQEFMVLADAGEDEVLYTPDG-KYAANVEKA 239



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 97/172 (56%), Gaps = 1/172 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     SARGIE+GHIF  GTKYS  M AT+    G+D  + MG YG+G  R+  A +E 
Sbjct: 428 PSQTLESARGIEIGHIFQLGTKYSQAMGATYTSETGEDLPLVMGCYGVGVSRLAQAAVEQ 487

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GIIWP ++AP+ + +      D       +++Y++L++ G +   DD  E+ G +
Sbjct: 488 SYDKDGIIWPVAIAPYHVIITVPNVSDNQQMAIAQQLYSQLNQAGVETLLDDRNERAGVK 547

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F  ADL+G P +++ G + +   KVE+  R      ++ +E+V++    + S
Sbjct: 548 FKDADLVGIPYRIVTG-RAIKSGKVELVQRADHESSEVPIEQVVSLLQQKIS 598


>gi|326572669|gb|EGE22658.1| prolyl-tRNA synthetase [Moraxella catarrhalis CO72]
          Length = 572

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 125/274 (45%), Positives = 171/274 (62%), Gaps = 4/274 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LMLR G+I + + G+Y W+P+G + L  V  I+REE
Sbjct: 1   MKASQFIFATLKETPNDADIASSQLMLRAGLIRKLASGLYVWMPMGLRVLKRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +P  Q  +LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TDI R+
Sbjct: 61  MEKIDSQELLMPVTQPGELWHESGRWEDYGAELLRFKDRHSRDFVLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP TFYQIQ KFRDE+RPRFGVMR+REF MKDAYSF +  E   ++Y  M+ +
Sbjct: 121 ELKSYKQLPITFYQIQTKFRDEIRPRFGVMRAREFTMKDAYSFHIDKESLANTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP---SENT 237
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S D  DF      +E  
Sbjct: 181 YNRIFTRLGLNFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSSD-SDFAANIELAEAV 239

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +D   +          P   T +   E L   L
Sbjct: 240 CYDKRAAPTQARTDVDTPNMTTCEAVAEHLNIPL 273



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 68/194 (35%), Positives = 107/194 (55%), Gaps = 8/194 (4%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A      D  N    D  P+ K V    RGIEVGHIF  G KYS  ++ +  G +GK  
Sbjct: 379 DATITQIVDTRNVVDGDPSPDGKGVISIKRGIEVGHIFQLGDKYSKALNCSVLGKEGKPV 438

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD------SVAPFKISLINIKAHDQVCRDA 364
            + MG YGIG  R++AA IE +HD  GIIW +      S+APF ++++ +K+ D      
Sbjct: 439 TLMMGCYGIGVSRIIAAAIEQNHDDNGIIWAEPEDKADSIAPFYVAIVPMKSKDGDAEAK 498

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +Y  L   G +V  DD  E+ G +FA  +L+G P +++V  + ++++K E  +R TG
Sbjct: 499 AQSLYQTLKARGINVLLDDRDERAGVKFADLELIGIPHRIVVSQRNLAENKYEYTNRATG 558

Query: 425 IREDMSLEEVINYA 438
            ++ +SL+E++   
Sbjct: 559 DQQMLSLDELLALF 572


>gi|326566943|gb|EGE17081.1| prolyl-tRNA synthetase [Moraxella catarrhalis 12P80B1]
          Length = 572

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 125/274 (45%), Positives = 171/274 (62%), Gaps = 4/274 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LMLR G+I + + G+Y W+P+G + L  V  I+REE
Sbjct: 1   MKASQFIFATLKETPNDADIASSQLMLRAGLIRKLASGLYVWMPMGLRVLKRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +P  Q  +LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TDI R+
Sbjct: 61  MEKIDSQELLMPVTQPGELWHESGRWEDYGAELLRFKDRHSRDFVLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP TFYQIQ KFRDE+RPRFGVMR+REF MKDAYSF +  E   ++Y  M+ +
Sbjct: 121 ELKSYKQLPITFYQIQTKFRDEIRPRFGVMRAREFTMKDAYSFHIDKESLANTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP---SENT 237
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S D  DF      +E  
Sbjct: 181 YNRIFTRLGLNFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSSD-SDFAANIELAEAV 239

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +D   +          P   T +   E L   L
Sbjct: 240 CYDKRAAPTQARTDVDTPNMTTCEAVAEHLNIPL 273



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/194 (34%), Positives = 107/194 (55%), Gaps = 8/194 (4%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A      D+ N    D  P+   V    RGIEVGHIF  G KYS  ++ +  G +GK  
Sbjct: 379 DATITQIVDIRNVVDGDPSPDGNGVISIKRGIEVGHIFQLGDKYSKALNCSVLGKEGKPV 438

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD------SVAPFKISLINIKAHDQVCRDA 364
            + MG YGIG  R++AA IE +HD  GIIW +      S+APF ++++ +K+ D      
Sbjct: 439 TLMMGCYGIGVSRIIAAAIEQNHDDNGIIWAEPEDKADSIAPFYVAIVPMKSKDGDAEAK 498

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +Y  L   G +V  DD  E+ G +FA  +L+G P +++V  + ++++K E  +R TG
Sbjct: 499 AQSLYQTLKARGINVLLDDRDERAGVKFADLELIGIPHRIVVSQRNLAENKYEYTNRATG 558

Query: 425 IREDMSLEEVINYA 438
            ++ +SL+E++   
Sbjct: 559 DQQMLSLDELLALF 572


>gi|289434600|ref|YP_003464472.1| hypothetical protein lse_1235 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170844|emb|CBH27386.1| proS [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 568

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 124/294 (42%), Positives = 165/294 (56%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLTLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAVGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     Y+ M  +
Sbjct: 121 EIKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATNESLDEVYDLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y  IF R GL+   + A+SG IGG  + EF+ L+D GE  +  S    D+    E     
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGKETQEFLALSDIGEDTIAYSD-ASDYAANVEMAPVL 239

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                   L   +E+ T P   T       L   + +  +     ++   I   
Sbjct: 240 HMEKKSHELEKELEKVTTPDQKTIADIVTFLEVPIEKTMKSMLYQVDEEVIMVL 293



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 383 DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSQAMNATVLDENGRAQPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G++W   ++PF + LI +    +      E +Y  L + G  
Sbjct: 443 IGVSRILSAIAEQSNDENGLVWDKKISPFDLHLIPVNMKSEEQVAFAETLYQSLQQAGFS 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N  
Sbjct: 503 VLIDDRSERAGVKFADADLIGLPIRITVGKK-AAEGIVEVKIRKTGEMIEVRQDELLNTL 561


>gi|239618079|ref|YP_002941401.1| prolyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
 gi|259511603|sp|C5CFP9|SYP_KOSOT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|239506910|gb|ACR80397.1| prolyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
          Length = 581

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 108/254 (42%), Positives = 163/254 (64%), Gaps = 2/254 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+E P DA++ S KL++R G + +++ G+Y++LPLG + L  V  I+REE
Sbjct: 1   MRFSQLYAPTLKEAPSDADLVSIKLLIRGGFVRKNAAGVYTYLPLGLRVLKKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+ +P +Q A+LW ESGR+D YG EM++  DR+++    GPTHEE++T I R+
Sbjct: 61  MAAIGCQEILMPIIQPAELWFESGRWDDYGPEMMKFKDRHERDFTLGPTHEELLTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR  P + +QI  K+RDE+RPRFG++R+REFLMKDAYSF    E    +Y   + +
Sbjct: 121 ELRSYRQFPLSLFQIANKYRDEIRPRFGLIRAREFLMKDAYSFHTDWESLDKAYKDFYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RI  R+GLK + + A++G IGGD SHEF  LADTGE+ +        +    E  ++ 
Sbjct: 181 YGRIMERIGLKYLVVEADTGAIGGDESHEFNALADTGESTLLYCDCG--YAASDEKAEYM 238

Query: 241 DIISLNSIVEQWTA 254
            +   +  V++  A
Sbjct: 239 MLSDEDPDVQEEKA 252



 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/196 (32%), Positives = 95/196 (48%), Gaps = 8/196 (4%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+      D  P+        +GIE+GHIF  GTKYS  M+  F   +G++H   MG
Sbjct: 381 EWFDLKLAVEGDPCPKCGKPMKMTKGIELGHIFKLGTKYSEKMNGYFTDENGENHPYIMG 440

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG G  R ++AV+E  HD  G+IWP S+APF I +  +    +      E++Y  L + 
Sbjct: 441 CYGWGISRTMSAVVEQMHDEHGMIWPLSIAPFHIIITMVNPSQEQISKVGEELYELLKEK 500

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-- 433
             +V  DD     G +F  ADL+G PL++ VG K ++   +E+K R      ++S+ E  
Sbjct: 501 -YEVLLDDRQASPGVKFKDADLIGIPLRITVGKK-LTKGLIELKLRTEKQLVEVSISEGY 558

Query: 434 --VINYASHRFSNNRP 447
             V+           P
Sbjct: 559 DSVLETVEKLLKKYDP 574


>gi|229552552|ref|ZP_04441277.1| threonine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|258539925|ref|YP_003174424.1| threonyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
 gi|229314104|gb|EEN80077.1| threonine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|257151601|emb|CAR90573.1| Threonyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
          Length = 657

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 160/445 (35%), Gaps = 38/445 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD  +    L L    +  +   G+  W+P G      +   I +++   G  
Sbjct: 232 RRKEAAERDHRVIGRDLDLF--FVDPKVGAGLPYWMPNGATIRRVIERYIIDKEIADGYE 289

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + DL+  SG +D Y ++M    D  D  M    P +      I+  HI+SYR
Sbjct: 290 HVYTPVLANLDLYKTSGHWDHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LP    ++ +  R E       ++    +  +     +  +  +  + K+    + ++ 
Sbjct: 350 ELPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQEEFKKILRLIMDVYE 409

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISL 245
              +     R                  D   T+ +   D M     S      DD+   
Sbjct: 410 DFNITDYSFRLS--------------YRDPKNTEKYFDDDEMWTRSQSMLKGAMDDLHLD 455

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    D+  +    +L  ++ +S   ++    F    ++    + T+ G 
Sbjct: 456 YYEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----NLTYVGK 504

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DG++H   M     G +  +   I    +     +P  +AP +  LI +   + +  D  
Sbjct: 505 DGEEHRPVMIHR--GIVGTMERFIAYLTEIYKGAFPTWLAPTQAVLIPVN--NDLHLDYV 560

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-- 423
            +I  ++   G  V  DD  E++G +   A     P  V+VG K ++D+ V ++      
Sbjct: 561 NRIKRQMQAAGLRVKVDDRNEKMGYKIREAQTKKIPYTVVVGDKELNDAAVSVRRYGDEH 620

Query: 424 --GIREDMSLEEVINYASHRFSNNR 446
                 +M ++ ++    +   + +
Sbjct: 621 TEEEAGNMFIDAMVAEVKNYSRDGK 645


>gi|315038857|ref|YP_004032425.1| threonyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
 gi|312276990|gb|ADQ59630.1| threonyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
          Length = 645

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 152/432 (35%), Gaps = 34/432 (7%)

Query: 17  DAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           D       L L    +  +   G+  W+P G      V   I + +   G   +  P L 
Sbjct: 240 DHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVLM 297

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
           + D +  SG +  Y  +M    D  D  M    P +      I++ HI+SYR+LP    +
Sbjct: 298 NLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSYRDLPLRVAE 357

Query: 135 IQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           + +  R E      G+ R RE  + D ++F    +     + K+    + ++    +   
Sbjct: 358 LGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQDE-FAKILKLIMDVYKDFDITDY 416

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
             R                       + F + +  +          DD+       E   
Sbjct: 417 YFRLS-------------YRDPKNTEKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGEA 463

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G DG++H   
Sbjct: 464 AFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLTYVGQDGEEHRPV 512

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           M     G +  +   I    +     +P  +AP +  +I +   +    +  EK+   L+
Sbjct: 513 MIHR--GIVGTMERFIAYLTEIYKGAFPTWLAPIQAEIIPVN--NDAHGEYAEKVRQELA 568

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           K G     D+  E++G +   +     P  +++G + + +  V ++   T      SL++
Sbjct: 569 KRGFRAEVDNRNEKMGYKIRESQTQKVPYTLVLGDEEMKNGSVNVRRYGTDEEISKSLDD 628

Query: 434 VINYASHRFSNN 445
            I        + 
Sbjct: 629 FIKEIDADVKSY 640


>gi|296113641|ref|YP_003627579.1| prolyl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|295921335|gb|ADG61686.1| prolyl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|326568678|gb|EGE18749.1| prolyl-tRNA synthetase [Moraxella catarrhalis BC7]
          Length = 572

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 125/274 (45%), Positives = 171/274 (62%), Gaps = 4/274 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LMLR G+I + + G+Y W+P+G + L  V  I+REE
Sbjct: 1   MKASQFIFATLKETPNDADIASSQLMLRAGLIRKLASGLYVWMPMGLRVLKRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +P  Q  +LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TDI R+
Sbjct: 61  MEKIDSQELLMPVTQPGELWHESGRWEDYGAELLRFKDRHSRDFVLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP TFYQIQ KFRDE+RPRFGVMR+REF MKDAYSF +  E   ++Y  M+ +
Sbjct: 121 ELKSYKQLPITFYQIQTKFRDEIRPRFGVMRAREFTMKDAYSFHIDKESLANTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP---SENT 237
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S D  DF      +E  
Sbjct: 181 YNRIFTRLGLNFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSSD-SDFAANIELAEAV 239

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +D   +          P   T +   E L   L
Sbjct: 240 CYDKRAAPTQARTDVDTPNMTTCEAVAEHLNIPL 273



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/194 (35%), Positives = 108/194 (55%), Gaps = 8/194 (4%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A      D+ N    D  P+ K V    RGIEVGHIF  G KYS  ++ +  G +GK  
Sbjct: 379 DATITQIVDIRNVVDGDPSPDGKGVISIKRGIEVGHIFQLGDKYSKALNCSVLGKEGKPV 438

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD------SVAPFKISLINIKAHDQVCRDA 364
            + MG YGIG  R++AA IE +HD  GIIW +      S+APF ++++ +K+ D      
Sbjct: 439 TLMMGCYGIGVSRIIAAAIEQNHDDNGIIWAEPEDKADSIAPFYVAIVPMKSKDGDAEAK 498

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +Y  L   G +V  DD  E+ G +FA  +L+G P +++V  + ++++K E  +R TG
Sbjct: 499 AQSLYQTLKARGINVLLDDRDERAGVKFADLELIGIPHRIVVSQRNLAENKYEYTNRATG 558

Query: 425 IREDMSLEEVINYA 438
            ++ +SL+E++   
Sbjct: 559 DQQMLSLDELLALF 572


>gi|312875562|ref|ZP_07735563.1| threonine--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
 gi|311088816|gb|EFQ47259.1| threonine--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
          Length = 643

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 154/434 (35%), Gaps = 36/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      +   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y ++M    D  D  M    P +      I+  HI+SYR LP    
Sbjct: 296 MNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++    +  
Sbjct: 356 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVELDQVQSE-FAKILKLIMEVYRDFDITD 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 415 YYFRLS-------------YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEAEGE 461

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++    + ++ G DG++H  
Sbjct: 462 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----NLSYVGKDGEEHRP 510

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G M    A +   + G    W        + +  I  ++    +  + +  +
Sbjct: 511 VMVHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PLQVKIIPVNNDAHGEYAQNVKDQ 565

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K+G     D   E++G +   A     P  +++G   +  + V ++   +  +E  +L
Sbjct: 566 LMKLGFRAEVDFRNEKLGYKIREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESKAL 625

Query: 432 EEVINYASHRFSNN 445
            E ++  S   ++ 
Sbjct: 626 SEFVSELSADVASY 639


>gi|108758923|ref|YP_631780.1| threonyl-tRNA synthetase [Myxococcus xanthus DK 1622]
 gi|122981032|sp|Q1D6E3|SYT_MYXXD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|108462803|gb|ABF87988.1| threonyl-tRNA synthetase [Myxococcus xanthus DK 1622]
          Length = 642

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 137/443 (30%), Gaps = 42/443 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   I +   RD      +L L     H +S G   W P G      ++  +R+   
Sbjct: 234 LAEYLTRIEESKKRDHRKLGKELDLF--HFHPYSPGSAFWTPKGTTLYTTLSNWMRQLTQ 291

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN--DKAMIYGPTHEEVMTDIFRS 120
             G +E+  P + +  LW  SG +  Y + M  + D    +      P +       +  
Sbjct: 292 NDGYVEIKTPLMFNKGLWETSGHWGKYKENMFLVLDSESGEHDFSLKPMNCPSHHLFYGF 351

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  ++   +  R+E      G+ R R+F   DA+ +    + +     + FV
Sbjct: 352 KKHSYRDLPLRYHTQDVLHRNEAAGSLGGLTRVRQFAQDDAHIYCTEAQITDE--VRRFV 409

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L   ++    +  ++  + P                           D          
Sbjct: 410 KLLDHVYKAVGLTYAVKLSTRPEQR-----------------LGDDSLWDRAEGGLKAAL 452

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           + +     +     A Y    D     + DS+    ++    ++                
Sbjct: 453 ESLGLEYELAPGDGAFYGPKIDF---AVSDSIGRRWQLGTMQLDYLAP--------ERFD 501

Query: 300 ATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+ G D  +H   +      G+     A++     G    W             +    
Sbjct: 502 LTYVGEDNAEHRPVVLHRAIFGSFERFTAILIEHFAGAFPAW------LAPIQAVLVTVA 555

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   K+   L   G  V +D+ G  + ++   A L   P  ++VG   VS   V  
Sbjct: 556 DRQNDYARKVRDSLRAKGYRVEFDERGLSMNAKIREAQLQKVPFTLVVGDNEVSGEGVSP 615

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +       + M + +     +  
Sbjct: 616 RRYGGEDLKTMKVTDFEALLAKE 638


>gi|281211698|gb|EFA85860.1| threonyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 730

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 67/431 (15%), Positives = 145/431 (33%), Gaps = 32/431 (7%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D         L     H +S G   +LP G +  + +++ +R E  + G  E+  P + S
Sbjct: 331 DHRNIGRDQELF--FFHPYSPGSCFFLPHGTRIYNKLHSFLRSEYRKRGFEEVITPNIYS 388

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             LW  SG + +Y   M      +  +    P +      +F     SY++LP       
Sbjct: 389 QKLWETSGHWQNYKDNMF-GFQCDHTSYSLKPMNCPGHCLMFAHKSHSYKDLPMRIADFG 447

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           +  R+E      G+ R R F   DA+ F    +  +    K       ++ + G     +
Sbjct: 448 VLHRNETHGSLTGLTRVRRFQQDDAHIFCRADQIREE-IQKCLEFMQFVYDKFGFSFS-L 505

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              + P                        D  +    S  +  ++      +     A 
Sbjct: 506 ELSTRPTPF-----------------LGDVDMWNRAEASLESVLNEFGREWRVNPGDGAF 548

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y    D+H   + D+  ++ + +   ++    F    ++ L  +A    +  +   +   
Sbjct: 549 YGPKIDIH---IKDANGKSHQCATIQLD----FQLPIRFGLEYTAA--DSRAERPVMIHR 599

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           +      R++A +IE +     +             +N         D    +  RL   
Sbjct: 600 AIFGSTERMMAILIEHTKGKWPLWLSPRQIFIAPVSVNSDGSGGPYNDYLNAVKQRLFDA 659

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  +  D   + I  +   A  L +   V++G +   ++ + I+ R +  +  ++L++ +
Sbjct: 660 GYHIDSDLSDKTINKKLREAITLRYNYLVVIGKEEQDNNTITIRRRDSTDQITLTLDKFL 719

Query: 436 NYASHRFSNNR 446
              +    N +
Sbjct: 720 EELNDNIINFK 730


>gi|304436529|ref|ZP_07396502.1| proline--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370472|gb|EFM24124.1| proline--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 569

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 119/285 (41%), Positives = 164/285 (57%), Gaps = 2/285 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +  + P L+  P +AEIASH+LM R G+I + + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MRATNLYAPTLRNTPAEAEIASHQLMYRAGLIRKSAGGMYTYLPLAWRTIRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P LQ ++LW ESGR+ +YG EM+ + DR+ +    GPTHEE++T + R 
Sbjct: 61  MDAAGGQEIMMPILQPSELWEESGRWGAYGAEMICVKDRHGREFCMGPTHEEMITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFGVMRSREF+MKD YSFD    G   SY KM V+
Sbjct: 121 EVRSYKQLPLMLYQIQDKFRDERRPRFGVMRSREFIMKDLYSFDKDIAGMNESYRKMAVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP--IPSENTD 238
           Y  IF R GL    + A+SG IGG  S EF VLA  GE+++ C            +    
Sbjct: 181 YTNIFTRCGLNFRAVEADSGAIGGGHSEEFTVLAPEGESRIACCDACSYAASDEKAALRP 240

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
            D        +E+   P A T  +  E L   + +  +  A   E
Sbjct: 241 IDAAAEEALPLEKVATPDAHTIAMLAEYLRIPVEKTIKAVAYQTE 285



 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 105/218 (48%)

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
             M   +   N      I++N   +  +        V    L  S         RGIE G
Sbjct: 350 MRMHNAVSGANEQDFHYINVNPQRDFGSVTVTDIRLVAEGDLCPSCGVGHLHIGRGIEAG 409

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            IF  GTKYS  M ATF    GK   +QMG YGIG  R +AA IE +HD  GIIWP ++A
Sbjct: 410 QIFALGTKYSEAMGATFLDESGKTQPLQMGCYGIGVGRTMAAAIEQNHDAHGIIWPRAIA 469

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P+++ ++ + A  +      E+IY  L   G DV  DD  E+ G +F   DL+G+P+++ 
Sbjct: 470 PYEVVVVAVNAKVEEQLAYAEEIYEELRAAGVDVLLDDRRERAGVKFNDCDLIGYPVRIA 529

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G K + +  +E+K R +G   D + +  +       +
Sbjct: 530 IGPKTIENGTIEVKIRQSGELVDFARDTYLKGVKDMLA 567


>gi|291450340|ref|ZP_06589730.1| threonyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291353289|gb|EFE80191.1| threonyl-tRNA synthetase [Streptomyces albus J1074]
          Length = 660

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 63/439 (14%), Positives = 134/439 (30%), Gaps = 35/439 (7%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R      G   ++ 
Sbjct: 255 EAEKRDHRKLGTELDLFS-FPDELGPGLAVFHPKGGVVRKEMENYSRRRHEDAGYEFVNT 313

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +    L+  SG   +Y + M    + + +       +  +   IF+   +SYR LP  
Sbjct: 314 PHISKEHLFETSGHLPNYSEGMFPPIEFDGQNYRLKAMNCPMHNLIFKGRGRSYRELPLR 373

Query: 132 FYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            ++    +R E      G+ RSR F   D++ +    +  +   + +    L +    GL
Sbjct: 374 LFEFGTVYRYEKSGVVHGLTRSRGFTQDDSHIYCTKEQMPEEL-DSLLTFVLDLLRDYGL 432

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +   +               D    +        +    +     +          
Sbjct: 433 NQFELELSTR--------------DPESDKFIGEDAEWEEATEALRQAAEKQGLPLVPDP 478

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y       + +  D++  + ++S   ++      FG          +  ADG   
Sbjct: 479 GGAAYYGPKI---SVQAKDAIGRSWQMSTIQVDFQQPKRFG--------LEYTAADGSRQ 527

Query: 311 YV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +     G++    AV+    +     +P  +AP +   I I           ++  
Sbjct: 528 QPVMIHRALFGSIERFFAVLL---EHYAGAFPAWLAPVQAVGIPIG---DAHVSYLQEFA 581

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A     G  V  D   +++  +         P  +IVG + ++   V  ++R       +
Sbjct: 582 ADAKARGLRVEVDSSSDRMQKKIRNHQKAKVPFMIIVGDEDMNAGTVSFRYRDGSQENGI 641

Query: 430 SLEEVINYASHRFSNNRPV 448
             E+ +            V
Sbjct: 642 PREDALAKLQDVVERRVQV 660


>gi|83816191|ref|YP_446893.1| threonyl-tRNA synthetase [Salinibacter ruber DSM 13855]
 gi|83757585|gb|ABC45698.1| threonyl-tRNA synthetase [Salinibacter ruber DSM 13855]
          Length = 694

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 142/441 (32%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +     +   RD      +L L T    Q   G+  WLP G      +  ++++EQ + G
Sbjct: 276 FLERRRKAKERDHRKLGTELNLFTFDTEQVGPGLPMWLPKGTTLRQTLQEVLQQEQVKQG 335

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRNDKAMIYGPTHEEVMTDIFR 119
              +  P +   DL+  SG Y  Y  +           D  +   +  P +      I++
Sbjct: 336 YKPVCTPHIGRLDLYRTSGHYPHYEDDQFPPMVTGEGDDGEEDGYLLKPMNCPHHVKIYQ 395

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR+LP    +    +R E      G+ R R F   DA+ F  TP   K  +  + 
Sbjct: 396 NDHHSYRDLPVRLAEFGTVYRQEQTGELGGLTRVRGFTQDDAHIFC-TPAQVKDEFKSVI 454

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENT 237
              L++   LG +    +                  D  +T+ +                
Sbjct: 455 DLTLKVLDALGFEEFEAQISLR--------------DPDDTEKYTGRDALWTRAEQDIRE 500

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +            A Y    D   E   D+L    ++    ++              
Sbjct: 501 AVAETDLDAYEEPGEAAFYGPKLDFMVE---DALGRAWQLGTIQVDYNLP--------ER 549

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              T+     +      +     G++     V+     G    W   +AP ++ +I +  
Sbjct: 550 FELTYVDEHDERKRPVMIHRAPFGSLERFIGVLIEHCGGNFPTW---LAPTQVQIIPVG- 605

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +++ A L      V  D   E +G +   A+    P  ++VG        V
Sbjct: 606 --DDFVDYAQEVAATLRAEDVRVEIDTSDETVGYKIREAETQKVPYMLVVGGDEEEAGTV 663

Query: 417 EIKHRLTGIREDMSLEEVINY 437
            ++    G +  +S+++ ++ 
Sbjct: 664 SVRSHADGPQGTVSVQDFLDR 684


>gi|254487235|ref|ZP_05100440.1| threonyl-tRNA synthetase [Roseobacter sp. GAI101]
 gi|214044104|gb|EEB84742.1| threonyl-tRNA synthetase [Roseobacter sp. GAI101]
          Length = 648

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 144/442 (32%), Gaps = 45/442 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  L +L+E   RD      ++ L    + + + G   W P G      +   +R +Q  
Sbjct: 234 RAHLNMLEEAAKRDHRKLGREMDLF--HMQEEAPGQVFWHPNGWLIYTQLQDYMRRKQRA 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G +E++ P +    LW +SG +D Y   M  +       R        P +      IF
Sbjct: 292 GGYVEVNTPQVVDRKLWEKSGHWDKYQDHMFIVEVDEEHAREKSVNALKPMNCPCHVQIF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D + F    +  +      
Sbjct: 352 NQGMKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIFCR-EDQIEEETLIY 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 I+  LG ++  ++    P     S E                   D    +  +
Sbjct: 411 IEFLSAIYKDLGFENFKVKFSDRPDTRAGSDE-----------------VWDKAEAALLS 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     I     A Y    +     L D++  + +     ++    F    +    
Sbjct: 454 ATRKAGIEPEINPGEGAFYGPKLEF---VLTDAIGRDWQCGTHQVD----FVLPER---- 502

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + ATF G+DG  H    +    +G+      ++   H GK   W         S+     
Sbjct: 503 LDATFVGSDGAKHRPVMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIT---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++   L+  G     D   E+I  +     +   P+ + VG++ V +  V
Sbjct: 559 --SEADDYVREVIETLTAAGVRAEADTRNEKINYKVREHSVGKVPVILAVGAREVEEKTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYA 438
            ++          SL +V    
Sbjct: 617 SVRRLGEKQTSVQSLADVAAAL 638


>gi|326559635|gb|EGE10049.1| prolyl-tRNA synthetase [Moraxella catarrhalis 7169]
 gi|326560025|gb|EGE10420.1| prolyl-tRNA synthetase [Moraxella catarrhalis 46P47B1]
 gi|326562507|gb|EGE12824.1| prolyl-tRNA synthetase [Moraxella catarrhalis 103P14B1]
 gi|326567687|gb|EGE17793.1| prolyl-tRNA synthetase [Moraxella catarrhalis BC1]
 gi|326574268|gb|EGE24216.1| prolyl-tRNA synthetase [Moraxella catarrhalis 101P30B1]
 gi|326575054|gb|EGE24983.1| prolyl-tRNA synthetase [Moraxella catarrhalis O35E]
          Length = 572

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 125/274 (45%), Positives = 171/274 (62%), Gaps = 4/274 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LMLR G+I + + G+Y W+P+G + L  V  I+REE
Sbjct: 1   MKASQFIFATLKETPNDADIASSQLMLRAGLIRKLASGLYVWMPMGLRVLKRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +P  Q  +LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TDI R+
Sbjct: 61  MEKIDSQELLMPVTQPGELWHESGRWEDYGAELLRFKDRHSRDFVLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP TFYQIQ KFRDE+RPRFGVMR+REF MKDAYSF +  E   ++Y  M+ +
Sbjct: 121 ELKSYKQLPITFYQIQTKFRDEIRPRFGVMRAREFTMKDAYSFHIDKESLANTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP---SENT 237
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S D  DF      +E  
Sbjct: 181 YNRIFTRLGLNFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSSD-SDFAANIELAEAV 239

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +D   +          P   T +   E L   L
Sbjct: 240 CYDKRAAPTQARTDVDTPNMTTCEAVAEHLNIPL 273



 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/194 (35%), Positives = 108/194 (55%), Gaps = 8/194 (4%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A      D+ N    D  P+ K V    RGIEVGHIF  G KYS  ++ +  G +GK  
Sbjct: 379 DATITQIVDIRNVVDGDPSPDGKGVISIKRGIEVGHIFQLGDKYSKALNCSVLGKEGKPV 438

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD------SVAPFKISLINIKAHDQVCRDA 364
            + MG YGIG  R++AA IE +HD  GIIW +      S+APF ++++ +K+ D      
Sbjct: 439 TLMMGCYGIGVSRIIAAAIEQNHDDNGIIWAEPEDKADSIAPFYVAIVPMKSKDGDAEAK 498

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +Y  L   G +V  DD  E+ G +FA  +L+G P +++V  + ++++K E  +R TG
Sbjct: 499 AQSLYQTLKARGINVLLDDRDERAGVKFADLELIGIPHRIVVSQRNLAENKYEYTNRATG 558

Query: 425 IREDMSLEEVINYA 438
            ++ +SL+E++   
Sbjct: 559 DQQMLSLDELLALF 572


>gi|319763197|ref|YP_004127134.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans BC]
 gi|330825391|ref|YP_004388694.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans K601]
 gi|317117758|gb|ADV00247.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans BC]
 gi|329310763|gb|AEB85178.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans K601]
          Length = 639

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 143/442 (32%), Gaps = 37/442 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I +HS G   W P G      V   +R      G
Sbjct: 231 YLHMLEEAEKRDHRRLGRELDLF--HIDEHSPGTVFWHPKGWTLWQEVEQYMRRVYRDNG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D Y + M  + +   +     P +      IF+  IKSY
Sbjct: 289 YQEVKAPQILDKSLWEKTGHWDKYRENMF-VTESEKRDYALKPMNCPGHILIFKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +     R+E      G+MR R F   D + F    +              R+
Sbjct: 348 RDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIFCTEDQIQHEVLAFTR-LLQRV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  +  + P     S E                   D    +          
Sbjct: 407 YQDFGFTDIVYKVATRPDARIGSDE-----------------IWDKAEAALIESLKASGC 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    +     L D++  + +     ++              + A + G
Sbjct: 450 DFEISPGEGAFYGPKIEY---TLKDAIGRHWQCGTIQVDFSMP--------ERLDAEYVG 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG  H    +    +G++     ++   H G   +W          L    A    CR+
Sbjct: 499 EDGGRHRPVMLHRAIVGSLERFIGILIEQHAGALPVWL--APVQVAVLNITDAQSDYCRE 556

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L      V  D   E+I  +     L   P  ++ G K  +   V ++ R  
Sbjct: 557 IAAKLQKALPHQDLRVVQDLRNEKITYKIREHALQKLPYILVAGDKEKAAGAVAVRARGN 616

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                MSL+  +   +   ++ 
Sbjct: 617 KDLGVMSLDAFVELIARDIASK 638


>gi|325295715|ref|YP_004282229.1| Prolyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325066163|gb|ADY74170.1| Prolyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 576

 Score =  230 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 116/253 (45%), Positives = 169/253 (66%), Gaps = 1/253 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P ++E+P DAEI SHKL++R G I + + G+Y  LPLG K L  +  +IREE
Sbjct: 1   MRFSRAFIPTMKESPADAEIPSHKLLIRAGFIRKKASGLYDILPLGVKVLLKIEKVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P +  A+LW+ESGR+D YGKEM++  DR+D+    GPT EE++TD+ R 
Sbjct: 61  MNKAGAQEVILPIMHPAELWIESGRWDVYGKEMIKFKDRHDRDYALGPTAEEMITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQI  KFRDE+RPRFG+MR+REF+MKDAYSF  + E ++  Y  M+ +
Sbjct: 121 EVKSYKDLPLNLYQIGRKFRDEIRPRFGLMRAREFIMKDAYSFHASNEDAEREYWNMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF ++GL    + A++G IGG  SHEF+V+ADTGE ++   +    +   +E  +  
Sbjct: 181 YSRIFRKMGLVFKAVEADTGEIGGKFSHEFMVIADTGEGKLVYCEKC-GYAASTEKAEQK 239

Query: 241 DIISLNSIVEQWT 253
           +     S  E + 
Sbjct: 240 EPKVPESRKENFK 252



 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 77/190 (40%), Positives = 104/190 (54%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                D    K  D  P+     +  RGIEVGHIF  GTKYS  M+ATF   DGK+  + 
Sbjct: 378 VTEFVDFAEVKGEDPCPKCAAPLIEKRGIEVGHIFKLGTKYSQAMNATFVDEDGKEKPMV 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  RV+AA +E ++D  GIIWP  +APF++ +I +    +   +  E IY  L 
Sbjct: 438 MGCYGIGVTRVMAAAVEQNYDENGIIWPVEIAPFEVIVIPVNVKKEEIIETAENIYDELQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           K G DV  DD   + G +F  ADL+G P Q+IVG K   +  VEIK R TG R ++++ +
Sbjct: 498 KNGFDVAIDDRNARPGFKFKDADLIGIPYQIIVGKK-AGEGVVEIKVRKTGERFEIAVNK 556

Query: 434 VINYASHRFS 443
           V+        
Sbjct: 557 VVEKIGELVR 566


>gi|84496326|ref|ZP_00995180.1| threonyl-tRNA synthetase [Janibacter sp. HTCC2649]
 gi|84383094|gb|EAP98975.1| threonyl-tRNA synthetase [Janibacter sp. HTCC2649]
          Length = 661

 Score =  230 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 68/439 (15%), Positives = 134/439 (30%), Gaps = 32/439 (7%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +   +R      G   +  
Sbjct: 253 EAEKRDHRKLGAELDLFS-FPDELGSGLPVFHPKGGVIKREMEDYVRRRHIEEGFDYVGT 311

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +    L+  SG    Y   M    +           +  +   IF S  +SYR LP  
Sbjct: 312 PHISKDGLFHTSGHLPYYADTMFPPMEFEGSKYQLKAMNCPMHNLIFSSRGRSYRELPLR 371

Query: 132 FYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           F++    +R E      G+ R R     D++S+    +        +    L +    GL
Sbjct: 372 FFEFGSVYRYEKSGVVHGLTRVRGMTQDDSHSYVTAEQAPAE-IKHLLDFVLSLLRDFGL 430

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           +   +   +    G+ S +FI   +             +           D         
Sbjct: 431 EDFYLELSTRDTEGEKSAKFIGSDEQ-----------WEVATSVLEKVATDSGLELVADP 479

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y       + +  D++    ++S    +      FG          ++ +DG   
Sbjct: 480 GGAAFYGPKI---SVQARDAIGRTWQMSTIQYDFNQPERFG--------LEYQASDGSRQ 528

Query: 311 YV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               + S   G++     V+   + G   +W   V    + +           D    + 
Sbjct: 529 QPVMIHSAKFGSIERFFGVLVEHYAGAFPVWLSPVQVLGLPVA------DEYNDYLWDVL 582

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +++   G  V  DD  ++   +   A     P  +I G    S++ V  ++R    +  +
Sbjct: 583 SQMKAKGIRVELDDSDDRFPKKIRNASKAKVPFALIAGEDDRSNNAVSFRYRDGSQKNGV 642

Query: 430 SLEEVINYASHRFSNNRPV 448
            +E+ I            V
Sbjct: 643 PIEDAIAEVLTAIETRAQV 661


>gi|326568855|gb|EGE18925.1| prolyl-tRNA synthetase [Moraxella catarrhalis BC8]
          Length = 572

 Score =  230 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 125/274 (45%), Positives = 171/274 (62%), Gaps = 4/274 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LMLR G+I + + G+Y W+P+G + L  V  I+REE
Sbjct: 1   MKASQFIFATLKETPNDADIASSQLMLRAGLIRKLASGLYVWMPMGLRVLKRVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +P  Q  +LW ESGR++ YG E+LR  DR+ +  + GPTHEEV+TDI R+
Sbjct: 61  MEKIDSQELLMPVTQPGELWHESGRWEDYGAELLRFKDRHSRDFVLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP TFYQIQ KFRDE+RPRFGVMR+REF MKDAYSF +  E   ++Y  M+ +
Sbjct: 121 ELKSYKQLPITFYQIQTKFRDEIRPRFGVMRAREFTMKDAYSFHIDKESLANTYQDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP---SENT 237
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S D  DF      +E  
Sbjct: 181 YNRIFTRLGLNFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSSD-SDFAANIELAEAV 239

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +D   +          P   T +   E L   L
Sbjct: 240 CYDKRAAPTQARTDVDTPNMTTCEAVAEHLNIPL 273



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/194 (34%), Positives = 108/194 (55%), Gaps = 8/194 (4%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A      D+ N    D  P+ K +    RGIEVGHIF  G KYS  ++ +  G +GK  
Sbjct: 379 DATITQIVDIRNVVDGDPSPDGKGIISIKRGIEVGHIFQLGDKYSKALNCSVLGKEGKPV 438

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD------SVAPFKISLINIKAHDQVCRDA 364
            + MG YGIG  R++AA IE +HD  GIIW +      S+APF ++++ +K+ D      
Sbjct: 439 TLMMGCYGIGVSRIIAAAIEQNHDDNGIIWAEPEDKADSIAPFYVAIVPMKSKDGDAEAK 498

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +Y  L   G +V  DD  E+ G +FA  +L+G P +++V  + ++++K E  +R TG
Sbjct: 499 AQSLYQTLKARGINVLLDDRDERAGVKFADLELIGIPHRIVVSQRNLAENKYEYTNRATG 558

Query: 425 IREDMSLEEVINYA 438
            ++ +SL+E++   
Sbjct: 559 DQQMLSLDELLALF 572


>gi|254992869|ref|ZP_05275059.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J2-064]
          Length = 568

 Score =  230 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 125/289 (43%), Positives = 164/289 (56%), Gaps = 18/289 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ------------------VF 222
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE                    ++
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDXXXXXXXXXXXXNTEMAPVLY 240

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             K   +     E     D  S+  IVE    P   T      ++ D +
Sbjct: 241 MEKKSHELEKDMEKVATPDQKSIADIVEFLEVPIEKTMKSMLYQVDDEV 289



 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 101/180 (56%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 383 DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G +W   ++PF + LI +    +      E +Y+ L   G  
Sbjct: 443 IGVSRILSAIAEQSNDENGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYSSLQDAGFS 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N  
Sbjct: 503 VLIDDRAERAGVKFADADLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTL 561


>gi|150007315|ref|YP_001302058.1| threonyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|255014060|ref|ZP_05286186.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_7]
 gi|256839604|ref|ZP_05545113.1| threonyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|166225472|sp|A6L9S2|SYT_PARD8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|149935739|gb|ABR42436.1| threonyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|256738534|gb|EEU51859.1| threonyl-tRNA synthetase [Parabacteroides sp. D13]
          Length = 651

 Score =  230 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 74/446 (16%), Positives = 141/446 (31%), Gaps = 40/446 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLTLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRLRLQEFLRRIQARY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++  
Sbjct: 289 NYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +  +  +  +    
Sbjct: 349 RSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKQE-FLNVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D    + +   D           +  +
Sbjct: 408 SIVFKTMNFENFEAQISLR--------------DKVNREKYIGSDENWEKAEQAIVEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLKAKIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQL 502

Query: 301 TFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            + GAD + H   M          R VA +IE +     +                    
Sbjct: 503 EYTGADNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLWLTPEQVCIMPI-------S 555

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D   +I   L         DD  E+IG +    +L   P  +IVG K   +S+V +
Sbjct: 556 EKFNDYAWQIARELGNQEIRAIVDDRNEKIGRKIRDNELKRIPYMLIVGEKEAENSEVSV 615

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           + +  G +  M +       +     
Sbjct: 616 RKQGEGDKGSMKIATFAALLNGEVEE 641


>gi|93005293|ref|YP_579730.1| prolyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
 gi|114152235|sp|Q1QDK7|SYP_PSYCK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|92392971|gb|ABE74246.1| prolyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
          Length = 572

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 112/235 (47%), Positives = 160/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++    L+E P DA+IAS +LM+R G+I + + G+Y WLP+G + L  V  I+REE
Sbjct: 1   MKASQFLFATLKETPSDADIASSQLMVRAGLIRKIASGLYIWLPMGLRVLQKVERIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P  Q A+LW  +GR++ YG E+LR  DR+D+  + GPTHEEV+T++ + 
Sbjct: 61  MQNIGAQEVLMPMTQPAELWQLTGRFNDYGPELLRFKDRHDRDFVLGPTHEEVITNLAQG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP TF+QIQ KFRDE+RPRFGVMR+REF MKDAYSF +       +Y++M+ +
Sbjct: 121 ELRSYKQLPITFFQIQNKFRDEIRPRFGVMRAREFTMKDAYSFHVDQASLAKTYDEMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL    ++A++G IGG  SHEF VLAD+GE  +  S    ++    E
Sbjct: 181 YTRIFTRLGLDFRAVQADTGSIGGFASHEFHVLADSGEDDIAFSDS-SEYAANVE 234



 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/199 (33%), Positives = 106/199 (53%), Gaps = 8/199 (4%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A      D+ N    D  P+ K      RGIEVGHIF  G KYS  M+ T  G DGK
Sbjct: 374 ERDAHITRIVDIRNVHEGDPSPDGKGTLQIKRGIEVGHIFQLGDKYSQAMNCTVSGEDGK 433

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA------PFKISLINIKAHDQVCR 362
              + MG YGIG  R++AA IE ++D  GI+WP +        PF+++++ +K+ +    
Sbjct: 434 PVTLMMGCYGIGVSRIIAAAIEQNNDENGIMWPSTPDISDSLAPFEVAIVPMKSKEDTVM 493

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +    +Y  L  +G +V  DD  E+ G +FA  +L+G P +++V  + +++ K E  +R 
Sbjct: 494 ETATALYEELKALGINVLLDDRNERPGVKFADLELIGIPHRIVVSDRNLAEDKYEYVNRR 553

Query: 423 TGIREDMSLEEVINYASHR 441
              ++ +S +EVI   S +
Sbjct: 554 DSEKQLLSRDEVIAKVSGK 572


>gi|312871712|ref|ZP_07731800.1| threonine--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
 gi|312872982|ref|ZP_07733042.1| threonine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|312874225|ref|ZP_07734259.1| threonine--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|315653646|ref|ZP_07906566.1| threonine--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|325912186|ref|ZP_08174584.1| threonine--tRNA ligase [Lactobacillus iners UPII 143-D]
 gi|329920107|ref|ZP_08276938.1| threonine--tRNA ligase [Lactobacillus iners SPIN 1401G]
 gi|311090295|gb|EFQ48705.1| threonine--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|311091504|gb|EFQ49888.1| threonine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|311092654|gb|EFQ51010.1| threonine--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
 gi|315489008|gb|EFU78650.1| threonine--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|325476136|gb|EGC79304.1| threonine--tRNA ligase [Lactobacillus iners UPII 143-D]
 gi|328936561|gb|EGG33005.1| threonine--tRNA ligase [Lactobacillus iners SPIN 1401G]
          Length = 643

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 154/434 (35%), Gaps = 36/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      +   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y ++M    D  D  M    P +      I+  HI+SYR LP    
Sbjct: 296 MNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++    +  
Sbjct: 356 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVELDQVQSE-FAKILKLIMEVYRDFDITD 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 415 YYFRLS-------------YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEAEGE 461

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++    + ++ G DG++H  
Sbjct: 462 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----NLSYVGKDGEEHRP 510

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G M    A +   + G    W        + +  I  ++    +  + +  +
Sbjct: 511 VMVHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PLQVKIIPVNNDAHGEYAQNVKDQ 565

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K+G     D   E++G +   A     P  +++G   +  + V ++   +  +E  +L
Sbjct: 566 LMKLGFRAEVDFRNEKLGYKIREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESKAL 625

Query: 432 EEVINYASHRFSNN 445
            E ++  S   ++ 
Sbjct: 626 SEFVSELSADVASY 639


>gi|239978444|ref|ZP_04700968.1| threonyl-tRNA synthetase [Streptomyces albus J1074]
          Length = 655

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 63/439 (14%), Positives = 134/439 (30%), Gaps = 35/439 (7%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R      G   ++ 
Sbjct: 250 EAEKRDHRKLGTELDLFS-FPDELGPGLAVFHPKGGVVRKEMENYSRRRHEDAGYEFVNT 308

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +    L+  SG   +Y + M    + + +       +  +   IF+   +SYR LP  
Sbjct: 309 PHISKEHLFETSGHLPNYSEGMFPPIEFDGQNYRLKAMNCPMHNLIFKGRGRSYRELPLR 368

Query: 132 FYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            ++    +R E      G+ RSR F   D++ +    +  +   + +    L +    GL
Sbjct: 369 LFEFGTVYRYEKSGVVHGLTRSRGFTQDDSHIYCTKEQMPEEL-DSLLTFVLDLLRDYGL 427

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +   +               D    +        +    +     +          
Sbjct: 428 NQFELELSTR--------------DPESDKFIGEDAEWEEATEALRQAAEKQGLPLVPDP 473

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y       + +  D++  + ++S   ++      FG          +  ADG   
Sbjct: 474 GGAAYYGPKI---SVQAKDAIGRSWQMSTIQVDFQQPKRFG--------LEYTAADGSRQ 522

Query: 311 YV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +     G++    AV+    +     +P  +AP +   I I           ++  
Sbjct: 523 QPVMIHRALFGSIERFFAVLL---EHYAGAFPAWLAPVQAVGIPIG---DAHVSYLQEFA 576

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A     G  V  D   +++  +         P  +IVG + ++   V  ++R       +
Sbjct: 577 ADAKARGLRVEVDSSSDRMQKKIRNHQKAKVPFMIIVGDEDMNAGTVSFRYRDGSQENGI 636

Query: 430 SLEEVINYASHRFSNNRPV 448
             E+ +            V
Sbjct: 637 PREDALAKLQDVVERRVQV 655


>gi|313633402|gb|EFS00238.1| prolyl-tRNA synthetase [Listeria seeligeri FSL N1-067]
          Length = 568

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 124/294 (42%), Positives = 165/294 (56%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLTLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAVGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     Y+ M  +
Sbjct: 121 EIKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATNESLDEVYDLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y  IF R GL+   + A+SG IGG  + EF+ L+D GE  +  S    D+    E     
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGKETQEFVALSDIGEDTIAYSD-ASDYAANVEMAPVL 239

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                   L   +E+ T P   T       L   + +  +     ++   I   
Sbjct: 240 HMEKKSHELEKELEKVTTPDQKTIADIVTFLEVPIEKTMKSMLYQVDEEVIMVL 293



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 383 DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSQAMNATVLDENGRAQPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G++W   ++PF + LI +    +      E +Y  L + G  
Sbjct: 443 IGVSRILSAIAEQSNDENGLVWDKKISPFDLHLIPVNMKSEEQVAFAETLYQSLQQAGFS 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N  
Sbjct: 503 VLIDDRSERAGVKFADADLIGLPIRITVGKK-AAEGIVEVKIRKTGEMIEVRQDELLNTL 561


>gi|59800999|ref|YP_207711.1| prolyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
 gi|81311217|sp|Q5F938|SYP_NEIG1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|59717894|gb|AAW89299.1| putative prolyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
          Length = 570

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 115/235 (48%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P +A  ASHKLM+R G+I  ++ G+Y+W+P+G + L  V  ++REE
Sbjct: 1   MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G++E+ +P +Q A+LW ESGR++ YGKE+LRL DR+++    GPT EEV+ DI R 
Sbjct: 61  MARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP  FY IQ KFRDE+RPRFGVMR+REF+MKDAYSF       + +Y+ M+ +
Sbjct: 121 EINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           + RIF RLGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E
Sbjct: 181 HCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDT-SDYAANIE 234



 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLPEN--K 275
           F  K + DF               +     +     A      D+ N    D  P+   +
Sbjct: 341 FTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGR 400

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              ARGIEVGH+F    KY+  M+ +F   +GK   ++MG YGIG  RVVAA IE ++D 
Sbjct: 401 LKLARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDE 460

Query: 336 KGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           KGIIW  ++APF++ ++ +        R+A ++IYA L   G DV  DD  E+ G     
Sbjct: 461 KGIIWTKAMAPFEVVIVPMNYKKSDTVREAADRIYAELLAAGADVLLDDRDERAGVLLND 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++LLG P ++++G + + +  VE   R     + +++ E++   +   +
Sbjct: 521 SELLGIPHRIVIGDRALKEGNVEYAERRGNEAQAVAIGEIVARVTASLN 569


>gi|254517451|ref|ZP_05129507.1| prolyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226911200|gb|EEH96401.1| prolyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 570

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 127/265 (47%), Positives = 163/265 (61%), Gaps = 1/265 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR GMI + + GIY+++PLG K L NV  I+REE
Sbjct: 1   MKMSNMLISTLREVPAEAEIDSHKLMLRAGMIRKMASGIYNYMPLGLKVLKNVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     +Q A+LW ESGR+D YG E++RL DRN++    GPTHEEV TDI R+
Sbjct: 61  MNNAGAQEFLASAVQPAELWQESGRWDVYGAELIRLKDRNNREFCLGPTHEEVFTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   EG   SYNKM  +
Sbjct: 121 EIKSYKQLPVNLYQIQTKYRDERRPRFGVMRSREFIMKDAYSFDKDQEGLDVSYNKMREA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF+R G+ + P+ A+SG IGG  S EF+V ++ GE  V       D+    E     
Sbjct: 181 YIKIFNRCGIDAKPVEADSGAIGGSNSAEFMVRSEVGEDDVVFCTAC-DYAANMEKAPST 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
              +    ++              E
Sbjct: 240 VEKADAEELKDLVKTETPNVKTIEE 264



 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/194 (36%), Positives = 104/194 (53%), Gaps = 4/194 (2%)

Query: 255 PYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 D  N    +  P    K   +RG EVGHIF  GTKYS  M+A F   +GK+   
Sbjct: 375 FQGVVGDYRNITEGEKCPVCGGKVTISRGTEVGHIFKLGTKYSEAMNANFIDENGKEKPF 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R +A++IE  +D  GI+WP SVAP+ +++I +   D+       +IY  L
Sbjct: 435 IMGCYGIGVTRTMASIIEQHNDENGIVWPLSVAPYHVNIIPVNIKDEEQMKIANEIYEDL 494

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             +G D   DD  E+ G +F  +DL+G P+++ VG K + D +VE K R T   E++ +E
Sbjct: 495 KSIGVDAILDDRNERAGVKFKDSDLMGIPMRITVGKK-IVDGEVEFKLR-TSDMENIKIE 552

Query: 433 EVINYASHRFSNNR 446
           E ++     F  N+
Sbjct: 553 EAVDRVREEFKKNK 566


>gi|326492063|dbj|BAJ98256.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326499331|dbj|BAK06156.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 667

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 157/445 (35%), Gaps = 42/445 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K ++   +E  R D       L L +  I +    G+  W P G      +    ++   
Sbjct: 258 KAYIHFKEEAKRRDHRRLGQDLDLFS--IQEDAGGGLVFWHPKGAIIRHILEDSWKQTHL 315

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  ADLW  SG  D Y + M    D  D+     P +      +++  +
Sbjct: 316 QRGYDLLYTPHVAKADLWKISGHIDFYKENMYNQMDVEDEPYQLRPMNCPYHILVYKRKL 375

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    ++   +R EL     G+ R R F   DA+ F L  +        +    
Sbjct: 376 QSYRDLPIRVAELGTVYRYELSGALHGLFRVRGFTQDDAHIFCLEDQIKDE-IRGVLDLT 434

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I  + G ++  +   + P                      S D  +    +     DD
Sbjct: 435 EEILGQFGFRNYEVNLSTRPEKS-----------------VGSDDIWEKATIALKDALDD 477

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +I E   A Y    D+   K+ D+L    + S   ++    F    ++      T
Sbjct: 478 KGWGYTIDEGGGAFYGPKIDL---KIEDALGRKWQCSTVQVD----FNLPERFD----IT 526

Query: 302 FKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +   K   + +    +G++     ++    +     +P  +AP +  ++ +  ++  
Sbjct: 527 YVDSHTEKKRPIMIHRAILGSLERFFGILI---ENYAGDFPLWLAPTQARILPVTNNE-- 581

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C ++ + L   G        GE++      A+    PL  +VG K V    + I+ 
Sbjct: 582 -LQYCNEVASELKSRGIRAEV-CHGERLPKLIRNAETQKVPLMAVVGPKEVEARTLTIRS 639

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    M ++  I+      ++ 
Sbjct: 640 RHNGEMGTMPVDNFISKIQSAVADK 664


>gi|315302972|ref|ZP_07873693.1| prolyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
 gi|313628661|gb|EFR97073.1| prolyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
          Length = 538

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 123/294 (41%), Positives = 165/294 (56%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  + AIIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLTLRKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR+  YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAVGAAELLMPALQPAELWQESGRWSDYGPELMRLKDRAARDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E     Y+ M  +
Sbjct: 121 EIKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASNESLDEVYDLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y  IF R GL+   + A+SG IGG  + EF+ L++ GE  +  S    D+    E     
Sbjct: 181 YSNIFSRCGLEFRSVIADSGSIGGKETKEFMALSEIGEDTIAYSD-ASDYAANVEMAPVL 239

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                   L   +E+ T P   T       L   + +  +     ++   I   
Sbjct: 240 HMEKKSHELEKELEKVTTPNQKTIADIVTFLEVPIEKTMKSMLYQVDEEVIMVL 293



 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/154 (38%), Positives = 87/154 (56%), Gaps = 2/154 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 383 DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSQAMNATILDENGRAQPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G++W   ++PF + LI +    +      E +Y  L + G  
Sbjct: 443 IGVSRILSAIAEQSNDENGLVWDKKISPFDLHLIPVNMKSEEQVAFAETLYVSLQQAGYS 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           V  DD GE+ G +FA ADL+G PL++ VG K   
Sbjct: 503 VLIDDRGERAGVKFADADLIGLPLRITVGKKAAE 536


>gi|296270051|ref|YP_003652683.1| threonyl-tRNA synthetase [Thermobispora bispora DSM 43833]
 gi|296092838|gb|ADG88790.1| threonyl-tRNA synthetase [Thermobispora bispora DSM 43833]
          Length = 657

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 66/445 (14%), Positives = 138/445 (31%), Gaps = 38/445 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      +L L +    +   G+  + P G      +    R      G
Sbjct: 248 YLHFLEEAEKRDHRRLGVELDLFS-FPEELGSGLPVFHPKGGTIRRIMEDYSRRRHEEAG 306

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              ++ P +    L+  SG  + Y   M    +         P +  +   IFR+  +SY
Sbjct: 307 YSFVNTPHITKEKLYQISGHLNWYADAMFPPMELEGARYYLKPMNCPMHNLIFRARGRSY 366

Query: 126 RNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP   ++    +R E      G+ R R     DA+ +    +        +    L +
Sbjct: 367 RELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDAHIYCTQEQMRDEL-RSLLRFVLDL 425

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               GL    +   +                    +   S +  +    +     +    
Sbjct: 426 LRDFGLNDFYLELST----------------KDPEKYVGSDEVWEEATRTLREVAEAENL 469

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y       + +  D++    ++S   ++    F             ++ 
Sbjct: 470 ELVLDPGGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FNLP----ELFELEYQA 518

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG       +     G++     V+    +     +P  +AP ++  I I    +    
Sbjct: 519 ADGTRKRPVMIHRALFGSIERFFGVLV---EHYAGAFPPWLAPVQVVGIPIT---EAHVP 572

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +  RL +    V  D   +++  +   A     P  ++ G K V+   V  ++R  
Sbjct: 573 YLQDVAKRLRERRIRVEVDASDDRMQKKIRNAQKAKVPYMLLAGDKDVAAGAVSFRYRNG 632

Query: 424 GIREDMSLEEVINYASHRFSNNRPV 448
             +  + +++ I            V
Sbjct: 633 EQKNGVPIDQAIEEIVSAVERRIQV 657


>gi|158313600|ref|YP_001506108.1| threonyl-tRNA synthetase [Frankia sp. EAN1pec]
 gi|238686857|sp|A8LE67|SYT_FRASN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|158109005|gb|ABW11202.1| threonyl-tRNA synthetase [Frankia sp. EAN1pec]
          Length = 658

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 69/447 (15%), Positives = 137/447 (30%), Gaps = 37/447 (8%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L +   RD      +L L +    +   G+  + P G      +    R     
Sbjct: 246 KAYQHRLAEAEKRDHRRLGAELDLFS-FPTEIGPGLAVFHPKGGAIRTVMEDYSRRRHIE 304

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHI 122
            G   ++ P +  +DL+  SG  D +   M               P +  +   IFRS  
Sbjct: 305 AGYEFVNTPHITKSDLYEISGHLDWFADGMYPPMQLDGGADYYLKPMNCPMHILIFRSRG 364

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP   ++    +R E      G+ R R     DA+ F    +      + +    
Sbjct: 365 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDAHLFCAREQLPTEL-DTVLKFV 423

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L +    GL+   +   + P                  +   S    +            
Sbjct: 424 LGLLRDYGLEDFYLELSTRP----------------PGKAIGSDKEWEEATELLREAASK 467

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 + E   A Y       + +  D++    ++S   ++    F    ++ +   A 
Sbjct: 468 QDLELVMDEGGGAFYGPKI---SVQARDAIGRTWQLSTIQVD----FQLPQRFDMTYQAA 520

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 +     +     G +    A++    +      P  +AP ++  I I       
Sbjct: 521 ---DGTRQRPFMIHRALFGTIERFFAILL---EHYAGALPPWLAPVQVVGIPIT---DEH 571

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                 + A+L + G  V  D   +++  +   A     P  ++ G + V+   V  + R
Sbjct: 572 VPYLTDVAAKLRQRGIRVEVDSSDDRMQKKIRTAQKQKVPFMLLAGDEDVAKGAVSFRFR 631

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPV 448
               R  + ++E +            V
Sbjct: 632 DGTQRNGVPVDEAVAEILDAVERRIQV 658


>gi|297584075|ref|YP_003699855.1| prolyl-tRNA synthetase [Bacillus selenitireducens MLS10]
 gi|297142532|gb|ADH99289.1| prolyl-tRNA synthetase [Bacillus selenitireducens MLS10]
          Length = 567

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 121/251 (48%), Positives = 166/251 (66%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+  Y  P L++ P DA++ SH+LMLR G+I Q + G+YS+LPLG K L  V AI+REE
Sbjct: 1   MRQRTYLSPTLRDIPSDADVVSHQLMLRAGLIRQSTSGVYSFLPLGYKVLQKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA EM +P++Q A+LW ESGR+D YG E++R  DR+ +    GPTHEEV+T I R 
Sbjct: 61  MDRAGAQEMFMPSIQPAELWQESGRWDDYGAELMRFKDRHQREFALGPTHEEVITAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP T YQIQ KFRDE RPRFGV+R REFLMKDAYSFD+  EG   SY++M+ +
Sbjct: 121 DIRSYKELPMTLYQIQTKFRDERRPRFGVLRGREFLMKDAYSFDVDFEGLDQSYDQMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y ++F R  L    + A+SG +GG  +HEF+VL+  GE  +  S    ++    E  + +
Sbjct: 181 YKKVFTRCDLNFRAVVADSGAMGGKDTHEFMVLSSIGEDTIAYSD-ESEYAANIEIAEVN 239

Query: 241 DIISLNSIVEQ 251
                +   E+
Sbjct: 240 VRYKPSDEAEK 250



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/187 (38%), Positives = 102/187 (54%), Gaps = 3/187 (1%)

Query: 259 TSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            SD+   +  D  P+ K       GIEVGH+F  GTKYS  + AT     GK   + MGS
Sbjct: 381 VSDIRMIQEGDPSPDGKGTIRFKEGIEVGHVFKLGTKYSEALGATVLDDQGKARPIVMGS 440

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R VAA+IE  HD  GIIWP SVAPF+  LI +       +   E +Y  L + G
Sbjct: 441 YGIGVSRTVAAIIEEHHDEDGIIWPLSVAPFQAHLIPVNIKQDEQKALAESLYTELQESG 500

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            D+ +DD  E+ G +F  +DLLG P++V +G K   +  VE+K+R +G   ++  +++ N
Sbjct: 501 LDILFDDRQERPGVKFKDSDLLGLPIRVTIGKK-AGEGIVEVKYRKSGETVEVHRDDLKN 559

Query: 437 YASHRFS 443
                 +
Sbjct: 560 TILEYVN 566


>gi|110833600|ref|YP_692459.1| prolyl-tRNA synthetase [Alcanivorax borkumensis SK2]
 gi|110646711|emb|CAL16187.1| Prolyl-tRNA synthetase [Alcanivorax borkumensis SK2]
          Length = 566

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 131/381 (34%), Positives = 190/381 (49%), Gaps = 19/381 (4%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           L  ++E P DA + SH+LMLR GM+ + + G+Y+WLP G + L  V  +IREE +R GA 
Sbjct: 2   LATVKETPADAVVTSHQLMLRAGMVRKLASGLYTWLPSGLRVLRKVEQVIREEMDRAGAQ 61

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+ +P +Q  +LW ESGR  +YG E+LR+ DR++     GPTHEEV+TD+ R+ + SY+ 
Sbjct: 62  EVLMPVVQPMELWEESGRAPAYGPELLRITDRHNNPFCLGPTHEEVITDMVRNELHSYKQ 121

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP  FYQIQ KFRDE+RPRFG+MRSREF+MKDAYSF    +    +Y  M  +Y  IF R
Sbjct: 122 LPANFYQIQTKFRDEIRPRFGIMRSREFIMKDAYSFHTNMDSLADTYQIMHRAYCAIFDR 181

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----NTDFDDII 243
           LGL   P+ A++G IGG  SHEF VLA++GE  +  S    D+    E         +  
Sbjct: 182 LGLDYRPVEADTGAIGGAASHEFHVLAESGEDDIAFSD-GSDYAANVELAEALAPTSERP 240

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPEN-KRVSARGIEVGHI--------FYFGTKY 294
           +  + +E+   P A T +    +    + +  K +  +G E G +               
Sbjct: 241 APGAAIEKVDTPNAKTIEELVTQFNLPIEKTIKTLVVKGAEEGQLVALLVRGDHELNDIK 300

Query: 295 SLPMSA-----TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           +  + A      F   +     V  G   +G + +   VI          +         
Sbjct: 301 AEKLDAVATPLEFASEEEIRKAVGAGPGSLGPVDLPFTVIADRSVAVMSDFGAGANEDGK 360

Query: 350 SLINIKAHDQVCRDACEKIYA 370
              NI     V       +  
Sbjct: 361 HYFNINWERDVALPQIADLRN 381



 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 116/207 (56%), Gaps = 4/207 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
           +D     +I  +        +D+ N    D  P+        RGIEVGHIF  GTKYS  
Sbjct: 357 EDGKHYFNINWERDVALPQIADLRNVVDGDPSPDGSGTLTIKRGIEVGHIFQLGTKYSEA 416

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-A 356
           + AT    +GK   + MG YGIG  RVVAA IE ++D +GIIWP+++APF+++L+ +   
Sbjct: 417 LGATVLDENGKSVVMPMGCYGIGVTRVVAAAIEQNNDDRGIIWPEAIAPFQVALVPVNIK 476

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                R+  EK+YA L+ +G +V +DD   E++G + A  +LLG P ++++  + + +  
Sbjct: 477 KSPRERELAEKLYAELTAMGIEVLFDDREKERLGVKLADTELLGIPHRIVIAERGMDNGV 536

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           +E K R    + +++++E++ +   + 
Sbjct: 537 LEYKGRRDADKTEVAMDEIVAFLKEKM 563


>gi|313638094|gb|EFS03361.1| prolyl-tRNA synthetase [Listeria seeligeri FSL S4-171]
          Length = 568

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 124/294 (42%), Positives = 165/294 (56%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLTLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAVGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     Y+ M  +
Sbjct: 121 EIKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATNESLDEVYDLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y  IF R GL+   + A+SG IGG  + EF+ L+D GE  +  S    D+    E     
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGKETQEFVALSDIGEDTIAYSD-ASDYAANVEMAPVL 239

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                   L   +E+ T P   T       L   + +  +     ++   I   
Sbjct: 240 HMEKKSHELEKELEKVTTPDQKTIADIVTFLEVPIEKTMKSMLYQVDEEVIMVL 293



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 383 DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSQAMNATVLDENGRAQPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G++W   ++PF + LI +    +      E +Y  L + G  
Sbjct: 443 IGVSRILSAIAEQSNDENGLVWDKKISPFDLHLIPVNMKSEEQVAFAETLYQSLQQAGFS 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N  
Sbjct: 503 VLIDDRSERAGVKFADADLIGLPIRITVGKK-AAEGIVEVKIRKTGEMIEVRQDELLNTL 561


>gi|225548931|ref|ZP_03769908.1| threonyl-tRNA synthetase [Borrelia burgdorferi 94a]
 gi|225370534|gb|EEG99970.1| threonyl-tRNA synthetase [Borrelia burgdorferi 94a]
          Length = 581

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 155/443 (34%), Gaps = 37/443 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L + +E   RD      +L L +    +   G+  + P G K    +    REE ++
Sbjct: 172 RSYLNLREEIKKRDHRKLGKELDLFSIH-EEIGPGLVFFHPNGAKIRALIEDFWREEHSK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y   M    + +       P +      I+ +   
Sbjct: 231 NGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYNTGKH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G+MR+R F   DA+      +       ++    +
Sbjct: 291 SYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHIICTHSQVLDE-IKEVLRFAI 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G  +      + P                  +   +    +  +        D 
Sbjct: 350 YMWSKFGFSNPKAYLSTKP-----------------DKSVGNDYDWEMSLKVLEETLSDF 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I +   A Y    D+   K+ DSL    ++S    +    F    ++++  +A  
Sbjct: 393 EVPYEIDKGGGAFYGPKIDL---KIVDSLEREWQMSTIQFD----FNLPERFNMTYTAE- 444

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +     +    +G++     ++   + G   +W   V    I + NI        
Sbjct: 445 --DGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLWLSPVQVVIIPVNNI------VE 496

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K++ +    G  +  D+   ++ ++         P   I+G +  ++ ++ I+ R 
Sbjct: 497 DYAIKVFNKFKNEGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREATEERISIRTRT 556

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 M L+E + +   +  + 
Sbjct: 557 NEQINGMKLDEALKFILFKIRDK 579


>gi|238063845|ref|ZP_04608554.1| threonyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
 gi|237885656|gb|EEP74484.1| threonyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
          Length = 676

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 136/444 (30%), Gaps = 38/444 (8%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E  R D       L L +    +   G+  + P G      +    R +   
Sbjct: 259 KAYLKLLEEAARRDHRKLGVDLDLFS-FPDELGSGLAVFHPKGGIIRREMENYSRIKHEE 317

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   ++ P +    L+  SG  D Y   M    +         P +  +   IFRS  +
Sbjct: 318 AGYAFVNTPHITKGHLYEVSGHLDWYADGMFPPMEVEGANYYLKPMNCPMHDLIFRSRGR 377

Query: 124 SYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R R     DA+ F    + +      +    L
Sbjct: 378 SYRELPLRMFEFGTVYRYEKSGVVHGLTRVRGMTQDDAHIFCTEEQMAGEL-KSLLAFVL 436

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    GL    +   +                        + +  +    +  T  ++ 
Sbjct: 437 ELLRDYGLDDFYLELSTRNPEKS----------------VGTDENWERATEALRTAAEES 480

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y       + +  D++    ++S   ++    F    ++       +
Sbjct: 481 GLHLVPDPAGAAFYGPKI---SVQAKDAIGRTWQMSTIQVD----FNLPERF----GLEY 529

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + ADG       +     G++     V+   + G    W   V    I +       +  
Sbjct: 530 QAADGTRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPI------REDH 583

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D      A L   G     D   +++  +   A     P  VI G   V+   V  ++R
Sbjct: 584 TDYLRGFVAALRAEGIRAQVDAGDDRMQKKIRTAQQQKIPFMVIAGDDDVAAGTVSFRYR 643

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
               R  +   E + +     ++ 
Sbjct: 644 DGSQRNGVPTAEAVAHVLDVVNSR 667


>gi|228475159|ref|ZP_04059885.1| threonine--tRNA ligase [Staphylococcus hominis SK119]
 gi|228270770|gb|EEK12172.1| threonine--tRNA ligase [Staphylococcus hominis SK119]
          Length = 645

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 70/428 (16%), Positives = 147/428 (34%), Gaps = 32/428 (7%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
               L L T        G+  WLP G      +   I +++   G   +  P L + +L+
Sbjct: 246 IGKDLELFTNN-QLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVELY 304

Query: 81  VESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
             SG +D Y  +M      ++   M+  P +      ++ +   SYR LP    ++    
Sbjct: 305 KTSGHWDHYRDDMFPPMKLDETEEMVLRPMNCPHHMMVYNNKPHSYRELPIRIAELGTMH 364

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E       ++    +  +     + P+  K  + ++      ++   G +    R   
Sbjct: 365 RYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKDEFKRVVHMIQDVYEDFGFEDYTFRLS- 423

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISLNSIVEQWTAPYAA 258
                          D  + + +   D M     S      D++           A Y  
Sbjct: 424 -------------YRDPEDKEKYMDDDDMWNKAESMLKEAVDEMGLPYVEAIGEAAFYGP 470

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
             DV   ++  ++ + + +S   ++    F    ++      ++ G+DG++H   +   G
Sbjct: 471 KLDV---QVKTAMGKEETLSTAQLD----FLLPERFD----LSYIGSDGENHRPVVIHRG 519

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           + +         +           +    +I  +N+  H     D    +   L   G  
Sbjct: 520 VVSTMERFVAFLTEETKGAFPTWLAPKQVEIIPVNVDLH----YDYARNLQDELKSQGVR 575

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E++G +   A +   P Q++VG K V +++V ++   +  +E +  +E I   
Sbjct: 576 VEIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNEVNVRKYGSQDQETIERDEFIWNL 635

Query: 439 SHRFSNNR 446
                  R
Sbjct: 636 VDEIRLKR 643


>gi|172038860|ref|YP_001805361.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171700314|gb|ACB53295.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 608

 Score =  230 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 155/442 (35%), Gaps = 39/442 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 196 EEALKRDHRRLGKELGLFI-FSDPVGPGLPLWTPKGTIIRSTLEDFLKQEQLKRGYLPVV 254

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLA------DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG + +Y ++M  +         ++   +  P +      I++S ++S
Sbjct: 255 TPHIGRVDLFKISGHWQNYKEDMFPMMAETEEAKTSEMGFVLKPMNCPFHIQIYKSELRS 314

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    +    +R E     G +        D     +TP+     +  +    L +
Sbjct: 315 YRDLPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPDQLDDEFLNVVDLILSV 374

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F  L LK+   R                  D    +   S +  +    +       +  
Sbjct: 375 FRSLQLKNFKARLS--------------FRDPNSDKYIGSNEAWNKAENAIRRAVQTLEM 420

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    D       D+L    ++    ++                  + G
Sbjct: 421 DYFEAEGEAAFYGPKLDFI---FQDALEREWQLGTVQVDYNLP--------ERFELEYVG 469

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G  H    +     G++  +  ++    +     +P  +AP ++ L+ +     V  D
Sbjct: 470 EEGNRHRPVMIHRAPFGSLERLIGILI---EEYAGDFPLWLAPTQVRLLPV---SDVQLD 523

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +  ++  +G     D  GE++G      +    P+  IVG+K V  + + I+ R +
Sbjct: 524 YVKDVANKMLSLGIRAEADTSGERLGKMIRNGEKQKIPVMAIVGAKEVEANALSIRTRAS 583

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M+++EVI   +   +N+
Sbjct: 584 GELGTMAVDEVIEKLNDAITNH 605


>gi|320159528|ref|YP_004172752.1| threonyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
 gi|319993381|dbj|BAJ62152.1| threonyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
          Length = 623

 Score =  230 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 68/445 (15%), Positives = 148/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L +      +   G+  W P G   ++ +  + +E + + 
Sbjct: 209 QYLWRLEEAKKRDHRKLGKELDIYL-FDDEIGPGLPLWTPRGGAIIEEIEKLAKEMEFKY 267

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P L   DL++ SG    Y + M    +         P +  +   IF S  +S
Sbjct: 268 GYERVRTPHLAKEDLYLRSGHLPYYAESMYPPMELEGVRYYVKPMNCPMHHKIFASKPRS 327

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP    +    +R E     FG+MR R   M D++ +  + E  +  +  +   YL 
Sbjct: 328 YRELPVRLAEYGTCYRYEKSGELFGLMRVRSMQMNDSHIYC-SEEQFEQEFVGVIHLYLE 386

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
            F   G++   MR  +                 G  + + +   +            D+ 
Sbjct: 387 YFRLFGIQDYLMRLST-------------HHPRGLGKKYVNNPELWRKTEDMVRKALDNN 433

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                 +    A Y    DV   ++  ++     ++   ++                  F
Sbjct: 434 GIPYVEIADEAAFYGPKIDV---QVKSAIGREFTLATNQVDFAQP--------ERFDLKF 482

Query: 303 KGADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               G++    +      +   R++  ++E       +                      
Sbjct: 483 INEKGEEERPLIIHRAPLSTHERLIGFLLEHYAGAFPVWLSPEQVRIIPIT-------DA 535

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +++  RL  +      D   +++ ++   A LL  P  ++VG +      V ++ 
Sbjct: 536 QNEYAKQLERRLRALEVRATADLDSDRMNAKIRKAQLLKIPYMLVVGEREAQAGAVALRK 595

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G ++ +S++E +     + S  
Sbjct: 596 RD-GTQQTLSVDEFVALLQEKISTR 619


>gi|317121850|ref|YP_004101853.1| prolyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
 gi|315591830|gb|ADU51126.1| prolyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
          Length = 586

 Score =  230 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 120/237 (50%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+++P +AEIASH+LMLR G+I + + GIY WLPLG++A+  V AI+REE
Sbjct: 1   MRWSRLLIPTLRDDPAEAEIASHRLMLRAGLIRRVTAGIYEWLPLGRRAVAKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G +E+ +P +Q A+LW E+GR+  YG+EM RL DR+ +    GPTHEE++TD+ R+
Sbjct: 61  MNRKGGLEVGLPIVQPAELWRETGRWAEYGEEMWRLKDRHGREYCLGPTHEEIITDLVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ K+RDE+RPRFGVMR+REF+MKDAYSFD+  EG + SY  M  +
Sbjct: 121 TVSSYRQLPLLLYQIQNKYRDEIRPRFGVMRAREFVMKDAYSFDVDAEGLERSYQAMDDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL    + A+ G IGG  +HEF+ LAD GE  +        +    E  
Sbjct: 181 YRRIFSRCGLVFRAVAADPGAIGGSGTHEFMALADYGEALIVYCDAC-GYAANVEKA 236



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 81/185 (43%), Positives = 108/185 (58%), Gaps = 2/185 (1%)

Query: 261 DVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+      DS P+      SARGIEVG IF   TKYS  +  TFK ADG++  + MG YG
Sbjct: 386 DLRLVGPGDSCPDCGAPMASARGIEVGQIFKLWTKYSEALGCTFKDADGRERPMVMGCYG 445

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R VAAVIE  HD KGIIWP SVAPF   ++ +  ++   R A E+IY +L + G +
Sbjct: 446 IGVTRTVAAVIEQHHDEKGIIWPMSVAPFHAVVVPVNYNEPDQRQAAERIYGQLVEAGVE 505

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              DD  E+ G +F  ADL+GFPL+V VG + +++ KVEI  R TG  + + +E      
Sbjct: 506 AVLDDRDERPGVKFNDADLIGFPLRVTVGPRGLAEGKVEIVDRATGQADPVPVEHAAAEV 565

Query: 439 SHRFS 443
           + R  
Sbjct: 566 ARRVR 570


>gi|117928726|ref|YP_873277.1| prolyl-tRNA synthetase [Acidothermus cellulolyticus 11B]
 gi|152074742|sp|A0LV31|SYP_ACIC1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|117649189|gb|ABK53291.1| prolyl-tRNA synthetase [Acidothermus cellulolyticus 11B]
          Length = 583

 Score =  230 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 98/236 (41%), Positives = 140/236 (59%), Gaps = 1/236 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+  L+E+P DAE+ SH+L++R G I + + GIYSWLPLG   L  +  I+R+E 
Sbjct: 4   RMSKLFVRTLREDPADAEVPSHRLLVRAGYIRRVAPGIYSWLPLGYAVLRKIEEIVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P L   +++  SGR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 64  LHIGGQEVHFPALIPREIYEASGRWNEYGDTLFRLKDRKGADYLLGPTHEELFTLLVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   +QIQ K+RDE RPR G++R REF+MKD+YSFDL   G   SY     +Y
Sbjct: 124 YSSYKDYPVILFQIQTKYRDEARPRAGILRGREFVMKDSYSFDLDDAGLAASYTAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            RIF RLGL+   + A SG +GG  S EF+ + + GE      ++  D+   +E  
Sbjct: 184 RRIFDRLGLRYRIVSAVSGAMGGSASEEFLAVTEVGEDAFVYCRNC-DYAANTEAV 238



 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 6/176 (3%)

Query: 269 DSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D       +   A+GIE+GHIF  G KY+        G DG+   + MGSYGIG  R VA
Sbjct: 407 DPCGRCGGRLALAQGIEIGHIFQLGRKYTDAFELDALGPDGRPIRITMGSYGIGVSRAVA 466

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-G 385
           A+ E  HD  G+IWP SV+P  + ++     +Q      E+  A L   G DV  DD   
Sbjct: 467 AIAEQCHDDAGLIWPRSVSPADVHVVIAGKGEQE--KLAEEFAAALDTAGLDVLLDDRVD 524

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              G +FA A+L+G P   +VG +  +   VE++ R +G R +++L + +      
Sbjct: 525 ASAGVKFADAELIGIPSIAVVG-RGAARGVVEVRDRGSGERRELALTDAVAELRTL 579


>gi|157364839|ref|YP_001471606.1| threonyl-tRNA synthetase [Thermotoga lettingae TMO]
 gi|166987326|sp|A8F8Q8|SYT_THELT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157315443|gb|ABV34542.1| threonyl-tRNA synthetase [Thermotoga lettingae TMO]
          Length = 638

 Score =  230 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 146/444 (32%), Gaps = 42/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L +L+E   RD       L +    I    + G+  + P G   L  +    R+   
Sbjct: 226 KNYLDLLEEARKRDHRKLGPALDIF--FIDFDVAAGMPVFTPNGTVILKELMEFSRQLHI 283

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P + S  LW  SG ++ Y + M     + ++     P +      ++++  
Sbjct: 284 EYGYEEVMTPLVMSEKLWRMSGHWEHYKENM-YFTTKEEQQFAIKPMNCPGHILVYKNKP 342

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  F++     R E      G+ R R F   DA+ F    +        +    
Sbjct: 343 VSYRDLPVRFFEFGKVHRYERSGVLHGLFRVRSFTQDDAHIFCRIDQVENE-IAGVINLV 401

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RI+ + G       AE   +  D                   +   +    +     + 
Sbjct: 402 HRIYSQFGFDYS---AELSTMPEDHM---------------GDEATWEKATEALRKAMES 443

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     + E+  A Y    D H   + DS+    + +   ++      FG  Y+      
Sbjct: 444 VGLQYVVKEKEGAFYGPKIDFH---VRDSIGRTWQCATIQLDFLMPQRFGLVYTSM---- 496

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                     V +     G++     ++   + G    W   V    I +          
Sbjct: 497 ---DGKYQQPVMIHRAIYGSLERFLGILIEHYAGAFPTWLAPVQVIIIPIA------DRH 547

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  EK+ +   K G  V  D   E +G +   A  +  P  ++VG +      V ++ R
Sbjct: 548 FEYAEKVKSEFVKNGVRVKIDARRETVGYKIRDAQSMKIPYMLVVGDREADSEAVSVRTR 607

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +       ++ V+   +   +  
Sbjct: 608 GS-DFGSKPVKLVLEKITEEIATR 630


>gi|284030961|ref|YP_003380892.1| prolyl-tRNA synthetase [Kribbella flavida DSM 17836]
 gi|283810254|gb|ADB32093.1| prolyl-tRNA synthetase [Kribbella flavida DSM 17836]
          Length = 587

 Score =  230 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 110/284 (38%), Positives = 153/284 (53%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+Y+WLPLG + L NV  I+REE 
Sbjct: 4   RMSSLFLRTLREDPADAEVPSHKLLVRAGYIRRTAPGMYTWLPLGLRVLRNVEKIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  +GR+  YG  + RL DR    M+ GPTHEE+ T   +  
Sbjct: 64  DAIGAQELVFPALLPREPYEATGRWTEYGPNLFRLKDRKGADMLLGPTHEEMFTLAVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + YQIQ K+RDE RPR GV+R REF+MKD+YSFD+   G + SY+    +Y
Sbjct: 124 YSSYKDLPLSIYQIQNKYRDEARPRAGVLRGREFVMKDSYSFDVDQAGLQASYDLHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD--F 239
           +RIF RLG   + ++A SG +GG  S EF+ +A+ GE     S       + +       
Sbjct: 184 IRIFDRLGFDYVIVQAMSGAMGGSASEEFLAVAENGEDTFVRSPGGYAANVEAVVVPQSP 243

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
               S     E    P   T D   E L    P          +
Sbjct: 244 PVDASAVPAAEVVDTPDTPTIDTLVETLNAKHPRTDGRQWTAAD 287



 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 89/173 (51%), Gaps = 3/173 (1%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 SARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VAA+ E 
Sbjct: 416 GSGPLQSARGIEMGHIFQLGQKYAEALDLKVLDQNGKLVTVTMGSYGVGVTRAVAAIAEG 475

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           +HD  G+IWP  + P  + L+      +V   A E +   L   G  V +DD      G 
Sbjct: 476 NHDELGLIWPREITPADVHLVATGKETEVFAKAAE-LATELESRGLTVLYDDREKVSPGV 534

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +F  A+LLG P   +VG K ++D  +E+K R +G R D+++ EV++       
Sbjct: 535 KFKDAELLGIPTIAVVG-KGLADGTIEVKDRRSGDRTDVAVTEVVDKLVEVVR 586


>gi|218438366|ref|YP_002376695.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7424]
 gi|218171094|gb|ACK69827.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7424]
          Length = 608

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 154/442 (34%), Gaps = 39/442 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 196 EEALKRDHRRLGRELGLFI-FSDAVGPGLPLWTPKGAIIRSTLEDFLKKEQIKRGYLPVV 254

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADR------NDKAMIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG + +Y ++M  +         N+   +  P +      I++S ++S
Sbjct: 255 TPHIARIDLFKISGHWQNYKEDMFPMMAEDQESALNEMGFVLKPMNCPFHIQIYKSELRS 314

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    +    +R E     G +        D     +TPE  +  +  +    L +
Sbjct: 315 YRDLPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPEQLEEEFLSVVDLILSV 374

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F+ L LK+   R                  D    +     D  +    +  +    +  
Sbjct: 375 FNSLQLKNFKARLS--------------FRDPASDKYIGGDDVWNKAENAIRSAVQKLNM 420

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +       A Y    D       D+L    ++    ++                  +  
Sbjct: 421 EHFEAPGEAAFYGPKLDFI---FKDALEREWQLGTVQVDYNLP--------ERFDLEYVA 469

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +     G++  +  ++    +     +P  +AP ++ L+ +        D
Sbjct: 470 EDGTRKRPVMIHRAPFGSLERLVGILI---EEYAGDFPLWLAPIQVRLLPV---SDPQLD 523

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++ A++   G     D  GE++G     A+    P+  +VG+K V  + + I+ R +
Sbjct: 524 YAKQVAAQMRSQGIRAEADTSGERLGKMIRNAEKQKIPVMGVVGAKEVESNTLSIRTRAS 583

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M++ EVI   +   +N 
Sbjct: 584 GELGTMAVNEVIEKVTEAIANY 605


>gi|154174749|ref|YP_001407384.1| threonyl-tRNA synthetase [Campylobacter curvus 525.92]
 gi|171769252|sp|A7GVZ2|SYT_CAMC5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|112802358|gb|EAT99702.1| threonyl-tRNA synthetase [Campylobacter curvus 525.92]
          Length = 606

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 154/437 (35%), Gaps = 40/437 (9%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      ++ L  G   +   G+  WLP G +    +  I+ +     G   +
Sbjct: 205 IEEAKKRDHRKLGVEMKLF-GFDEEVGGGLPIWLPNGGRLRSKLEQILYKAHRDRGYEPV 263

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P L  AD+W  SG Y +Y + M      +D      P +      ++++ I+SYR+LP
Sbjct: 264 RGPELLKADVWKRSGHYANYKENM-YFTTIDDAEYGIKPMNCVGHIKVYQTEIRSYRDLP 322

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F++  +  R E      G+ R REF   D++ F +         +++  + L I    
Sbjct: 323 LKFFEYGVVHRHEKSGVLHGLFRVREFAQDDSHIFCMP--------SQIKQNILEILSFA 374

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G            I  +   E+ +   T   +   S +  D    +     D+      I
Sbjct: 375 G-----------KIMQNFGFEYEMEISTKPAKAIGSDEIWDIATNALKEALDENGFKYGI 423

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    D+   K+ D+L    +     ++    F    ++       +  A+ +
Sbjct: 424 DEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPERFD----LGYIDANNE 472

Query: 309 DHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 +    +G+      ++            +       + + I        D  ++
Sbjct: 473 RQRPVMLHRALLGSFERFIGILIEHT------AGELPFFIAPTQVVIVPISDAHLDYAKE 526

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I   L K   D       E +  +   A+    P+ +++G   V++  V ++ R    + 
Sbjct: 527 IARELRKFNIDSEVASKNESLNKRIRTAEKQRVPMIIVLGDNEVANRSVALRDRQARTQS 586

Query: 428 DMSLEEVINYASHRFSN 444
           DMSL E +N    + S 
Sbjct: 587 DMSLAEFLNLTKEKLSE 603


>gi|15595065|ref|NP_212854.1| threonyl-tRNA synthetase [Borrelia burgdorferi B31]
 gi|218249246|ref|YP_002375218.1| threonyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|223889476|ref|ZP_03624062.1| threonyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|8928363|sp|O51662|SYT_BORBU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701542|sp|B7J0G5|SYT_BORBZ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2688663|gb|AAC67076.1| threonyl-tRNA synthetase (thrZ) [Borrelia burgdorferi B31]
 gi|218164434|gb|ACK74495.1| threonyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|223885162|gb|EEF56266.1| threonyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|312147875|gb|ADQ30534.1| threonyl-tRNA synthetase [Borrelia burgdorferi JD1]
          Length = 581

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 155/443 (34%), Gaps = 37/443 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L + +E   RD      +L L +    +   G+  + P G K    +    REE ++
Sbjct: 172 RSYLNLREEIKKRDHRKLGKELDLFSIH-EEIGPGLVFFHPNGAKIRALIEDFWREEHSK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y   M    + +       P +      I+ +   
Sbjct: 231 NGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYNTGKH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G+MR+R F   DA+      +       ++    +
Sbjct: 291 SYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHIICTHSQVLDE-IKEVLRFAI 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G  +      + P                  +   +    +  +        D 
Sbjct: 350 YMWSKFGFSNPKAYLSTKP-----------------DKSVGNDSDWEMSLKVLEETLSDF 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I +   A Y    D+   K+ DSL    ++S    +    F    ++++  +A  
Sbjct: 393 EVPYEIDKGGGAFYGPKIDL---KIVDSLEREWQMSTIQFD----FNLPERFNMTYTAE- 444

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +     +    +G++     ++   + G   +W   V    I + NI        
Sbjct: 445 --DGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLWLSPVQVVIIPVNNI------VE 496

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K++ +    G  +  D+   ++ ++         P   I+G +  ++ ++ I+ R 
Sbjct: 497 DYAIKVFNKFKNEGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREATEERISIRTRT 556

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 M L+E + +   +  + 
Sbjct: 557 NEQINGMKLDEALKFILFKIRDK 579


>gi|256391426|ref|YP_003112990.1| threonyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256357652|gb|ACU71149.1| threonyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 666

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 60/439 (13%), Positives = 133/439 (30%), Gaps = 39/439 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R+     G   ++ 
Sbjct: 261 EAEKRDHRKIGAELDLFS-FPDELGSGLPVFHPKGGTIRRVMEDYSRKRHEEAGYEFVNT 319

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           P +   +L+  SG  D Y   M            +     P +  +   I+R+  KSYR+
Sbjct: 320 PHITKGNLYEISGHLDWYKDGMFPPMVLDEGHGKQEYYLKPMNCPMHNLIYRARGKSYRD 379

Query: 128 LPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP   ++    +R E      G+ R R     DA+ +    +      + +    L +  
Sbjct: 380 LPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDAHIYCTREQMRDELVS-LLRFVLDLLR 438

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             GL    +   +                    +   + +  +    +     +      
Sbjct: 439 DYGLNDFYLELST----------------KDPEKYVGTDEEWELATDTLREVAEGEDLEL 482

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
            +     A Y       + +  D++    ++S   ++    F    ++ L   A      
Sbjct: 483 VMDPGGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FQLPQRFDLEYQAA---DG 532

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
            +   + +     G++     V+   + G    W   V    I +              E
Sbjct: 533 SRQRPIMIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPIT------DAHVPYLE 586

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + ++L   G  V  D   +++  +   A     P  ++ G   V+ + V  ++R     
Sbjct: 587 LVASKLRAEGVRVEIDSSDDRMQKKIRNAQKQKVPYMLLAGDDDVAKAAVSFRYRSGEQN 646

Query: 427 EDMSLEEVINYASHRFSNN 445
             + ++E +          
Sbjct: 647 NGVPVDEAVAEIVKAVRER 665


>gi|160889627|ref|ZP_02070630.1| hypothetical protein BACUNI_02053 [Bacteroides uniformis ATCC 8492]
 gi|317479178|ref|ZP_07938315.1| threonyl-tRNA synthetase [Bacteroides sp. 4_1_36]
 gi|156860619|gb|EDO54050.1| hypothetical protein BACUNI_02053 [Bacteroides uniformis ATCC 8492]
 gi|316904666|gb|EFV26483.1| threonyl-tRNA synthetase [Bacteroides sp. 4_1_36]
          Length = 646

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 148/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRIRLQDFLRRIQARY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++  
Sbjct: 289 DYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D    + +   D           +  +
Sbjct: 408 SIVFESMDFENFEAQISLR--------------DKVNREKYIGSDENWEKAERAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLKAKIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GAD + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYTGADNQKHRPVMVHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L +       D+  E+IG +    ++   P  ++VG K   + +V ++
Sbjct: 557 KFNDYAHEVKQYLKRYDIRAIVDERNEKIGRKIRDNEMKRIPYMLVVGEKEAENKEVAVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M  EE     +    N
Sbjct: 617 KQGEGDKGTMKFEEFAKKMNEEVQN 641


>gi|126657277|ref|ZP_01728443.1| threonyl-tRNA synthetase [Cyanothece sp. CCY0110]
 gi|126621548|gb|EAZ92259.1| threonyl-tRNA synthetase [Cyanothece sp. CCY0110]
          Length = 607

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 154/442 (34%), Gaps = 39/442 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 195 EEALKRDHRRLGKELGLFI-FSDPVGPGLPLWTPKGTIIRSTLEDFLKQEQLKRGYLPVV 253

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLA------DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG + +Y ++M  +         ++   +  P +      I++S ++S
Sbjct: 254 TPHIGRVDLFKISGHWQNYKEDMFPMMAENEEAKTSEMGFVLKPMNCPFHIQIYKSELRS 313

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    +    +R E     G +        D     +TP+     +  +    L +
Sbjct: 314 YRDLPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPDQLDDEFLNVVDLILSV 373

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F  L LK+   R                  D    +   S +  +    +       +  
Sbjct: 374 FRSLQLKNFKARLS--------------FRDPNSDKYIGSNEAWNKAENAIRRAVQTLDM 419

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    D       D+L    ++    ++                  + G
Sbjct: 420 NYFEAEGEAAFYGPKLDFI---FQDALEREWQLGTVQVDYNLP--------ERFELEYVG 468

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G  H    +     G++  +  ++    +     +P  +AP ++ L+ +     V  D
Sbjct: 469 EEGNRHRPVMIHRAPFGSLERLIGILI---EEYAGDFPLWLAPIQVRLLPV---SDVQLD 522

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + I  ++  +G     D  GE++G      +    P+  IVG+K V  + + I+ R +
Sbjct: 523 YVKDIANKMLSLGIRAEADTSGERLGKMIRNGEKQKIPVMAIVGAKEVEANALSIRTRAS 582

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M+++EVI       +N+
Sbjct: 583 GELGTMAVDEVIEKLRDTITNH 604


>gi|318057114|ref|ZP_07975837.1| threonyl-tRNA synthetase [Streptomyces sp. SA3_actG]
 gi|318075787|ref|ZP_07983119.1| threonyl-tRNA synthetase [Streptomyces sp. SA3_actF]
          Length = 658

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 134/439 (30%), Gaps = 36/439 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     ++L L +    +   G+  + P G      +    R      G   +  
Sbjct: 254 EAEKRDHRKLGNELDLFS-FPEEVGPGLAVFHPKGGIIRRAMEDYSRRRHEEEGYEFVYS 312

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+ +SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 313 PHTTKGALFQKSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 372

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ RSR F   DA+ +    + ++   +K     L +    G
Sbjct: 373 RLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIYCTKEQMAEEL-DKTLTFVLNLLRDYG 431

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +                  E +   S +  +    +     +         
Sbjct: 432 LDDFYLELST----------------KDEKKFVGSDEVWEEATATLRQVAEKQGLPLVPD 475

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++    F    ++ L  +A       + 
Sbjct: 476 PGGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLPERFDLSYTAA---DGSRQ 525

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +     G++    AV+    +      P  +AP +   I +           ++  
Sbjct: 526 RPVMIHRALFGSIERFFAVLL---EHYAGAMPPWLAPVQAVGIPVG---DAHVPYLKEFA 579

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A   + G  V  D   +++  +         P  VIVG   ++   V  +HR       +
Sbjct: 580 AEARRKGLRVDVDASSDRMQKKIRNHQKQKTPFMVIVGDDDMNAGTVSFRHRDGSQENGI 639

Query: 430 SLEEVINYASHRFSNNRPV 448
             +E I            V
Sbjct: 640 PKDEAIAKLLDIVERRVQV 658


>gi|314936214|ref|ZP_07843561.1| threonine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
 gi|313654833|gb|EFS18578.1| threonine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
          Length = 645

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 70/428 (16%), Positives = 147/428 (34%), Gaps = 32/428 (7%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
               L L T        G+  WLP G      +   I +++   G   +  P L + +L+
Sbjct: 246 IGKDLELFTNN-QLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVELY 304

Query: 81  VESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
             SG +D Y  +M      ++   M+  P +      ++ +   SYR LP    ++    
Sbjct: 305 KTSGHWDHYRDDMFPPMKLDETEEMVLRPMNCPHHMMVYNNKPHSYRELPIRIAELGTMH 364

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E       ++    +  +     + P+  K  + ++      ++   G +    R   
Sbjct: 365 RYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKDEFKRVVHMIQDVYEDFGFEDYTFRLS- 423

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISLNSIVEQWTAPYAA 258
                          D  + + +   D M     S      D++           A Y  
Sbjct: 424 -------------YRDPEDKEKYMDDDDMWNKAESMLKEAVDEMGLPYVEAIGEAAFYGP 470

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
             DV   ++  ++ + + +S   ++    F    ++      ++ G+DG++H   +   G
Sbjct: 471 KLDV---QVKTAMGKEETLSTAQLD----FLLPERFD----LSYIGSDGENHRPVVIHRG 519

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           + +         +           +    +I  +N+  H     D    +   L   G  
Sbjct: 520 VVSTMERFVAFLTEETKGAFPTWLAPKQVEIIPVNVDLH----YDYARNLQDELKSQGVR 575

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E++G +   A +   P Q++VG K V +++V ++   +  +E +  +E I   
Sbjct: 576 VEIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNEVNVRKYGSQDQETIERDEFIWNL 635

Query: 439 SHRFSNNR 446
                  R
Sbjct: 636 VDEIRLKR 643


>gi|260881838|ref|ZP_05893576.1| proline--tRNA ligase [Mitsuokella multacida DSM 20544]
 gi|260847809|gb|EEX67816.1| proline--tRNA ligase [Mitsuokella multacida DSM 20544]
          Length = 571

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 117/263 (44%), Positives = 162/263 (61%), Gaps = 2/263 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  + P L+  P +AEIASH+LM R GMI + + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MRASNLYAPTLRNTPAEAEIASHQLMYRAGMIRKTAGGMYTFLPLAWRTIRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P LQ A+ W ESGR+ +YG EM+R+ DR+ +    GPTHEE++T + R 
Sbjct: 61  MDAAGGQEIMMPILQPAEFWQESGRWGAYGDEMMRIKDRHGRDFCLGPTHEEMITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MRSREF+MKD YSFD   EG   SY KM+ +
Sbjct: 121 EVRSYKELPLMLYQIQDKFRDERRPRFGLMRSREFIMKDLYSFDKDVEGMNESYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP--IPSENTD 238
           Y  IF R+GL+  P+ A++G IGG  SHEF VLAD GE+ +              +E   
Sbjct: 181 YTNIFTRMGLEFRPVEADNGAIGGGHSHEFTVLADAGESNIAVCTKCDYAASDEKAELKP 240

Query: 239 FDDIISLNSIVEQWTAPYAATSD 261
            +        +E+ + P   T +
Sbjct: 241 VEAPAEDELPLEKVSTPGTNTIE 263



 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 2/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            +       +D+   K  D  P         RGIE G +F  GTKYS  M ATF   +GK
Sbjct: 375 DFDKDAIIVTDLRMVKEGDPCPHCGAPLKMTRGIEAGQVFTLGTKYSKAMGATFLDENGK 434

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +  + MG YGIG  R +AA IE ++D +GI+WP ++APF++ ++ + A  +      E I
Sbjct: 435 EQPLVMGCYGIGVGRTMAAAIEQNNDDQGIVWPRAIAPFEVVVVAVNAKKEEQLTYAEGI 494

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y    K G DV  DD  E+ G +F   DL+G+P++V +G K V +  +E+K R TG   +
Sbjct: 495 YDECRKAGLDVLLDDRKERAGVKFKDCDLIGYPVRVTIGPKAVDEDIIEVKVRKTGEVYN 554

Query: 429 MSLEEVINYASHRFSN 444
            +  + +        +
Sbjct: 555 FTRADYLEKVQELLKD 570


>gi|270293969|ref|ZP_06200171.1| threonyl-tRNA synthetase [Bacteroides sp. D20]
 gi|270275436|gb|EFA21296.1| threonyl-tRNA synthetase [Bacteroides sp. D20]
          Length = 646

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 148/445 (33%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVLLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRIRLQDFLRRIQARY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L++ SG Y  YGK+  +        +     P +      I+++  
Sbjct: 289 DYQEVMCPPIGNKLLYITSGHYAKYGKDSFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRLAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D    + +   D           +  +
Sbjct: 408 SIVFESMDFENFEAQISLR--------------DKVNREKYIGSDENWEKAERAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLKAKIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GAD + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYTGADNQKHRPVMVHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L +       D+  E+IG +    ++   P  ++VG K   + +V ++
Sbjct: 557 KFNDYAHEVKQYLKRYDIRAIVDERNEKIGRKIRDNEMKRIPYMLVVGEKEAENKEVAVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M  EE     +    N
Sbjct: 617 KQGEGDKGTMKFEEFAKKMNEEVQN 641


>gi|319941771|ref|ZP_08016093.1| prolyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
 gi|319804704|gb|EFW01571.1| prolyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
          Length = 582

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 119/275 (43%), Positives = 172/275 (62%), Gaps = 5/275 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR   +F+  L+E P DA++ S + M+R+GMI + + G+Y+++PLG + +  +  IIR+E
Sbjct: 1   MRARSFFISTLKEAPADADVISQQYMIRSGMIKKLAAGVYTYMPLGLRVIRKIENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G+IE+ +P +Q A+LW E+GR++ YG E+LR+ DR+ +  +  PT EEV+TD+ R 
Sbjct: 61  MVRAGSIELLMPMVQPAELWQETGRWEKYGPELLRIKDRHMRDFVLQPTSEEVITDVARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKS+R LP  F+ IQ KFRDE RPRFGVMR REF MKDAYSFD    G+  SY+KM+ +
Sbjct: 121 EIKSWRQLPVNFFHIQTKFRDERRPRFGVMRGREFTMKDAYSFDRDEAGAGLSYDKMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-- 238
           Y RIF R+GL    +RA++G IGG  SHEF V+A+ GE  +    D  D+    E  D  
Sbjct: 181 YQRIFTRIGLVFRAVRADTGSIGGSRSHEFQVIANAGEDVIAYCPD-SDYAANIELADAS 239

Query: 239 --FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              D   +  + +E+   P     ++  E L   L
Sbjct: 240 SVLDGRKAPTAALEKRATPGKEKCELVAEYLGLPL 274



 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 4/193 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D  P+ K V    RGIEVGH+F+ GT+YS PM ATF   +G+   +
Sbjct: 388 PEPVVMDLRNVVEGDKSPDGKGVLRLQRGIEVGHVFFLGTRYSEPMHATFLDENGQPKPM 447

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  RV  A IE  HD KGI WPD++APF++ +  +  A  +  R A + +Y  
Sbjct: 448 QMGCYGIGVTRVAGAAIEQRHDDKGIQWPDAIAPFEVVICPMNYAKSEDVRKAADALYED 507

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMS 430
           L   G DV  DD   + G  FA  +L+G P +V++G + + + ++E   R     +  + 
Sbjct: 508 LKARGVDVILDDRDMRPGVMFAEWELIGVPHRVVIGDRGLKNGEIEYAERTNLAEKTMVP 567

Query: 431 LEEVINYASHRFS 443
           + +   +   R  
Sbjct: 568 VADAAAFIVGRIK 580


>gi|262047409|ref|ZP_06020366.1| threonyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
 gi|260572383|gb|EEX28946.1| threonyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
          Length = 644

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 79/433 (18%), Positives = 153/433 (35%), Gaps = 34/433 (7%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD    S  L L    +  +   G+  W+P G      V   I + +   G   +  P L
Sbjct: 239 RDHRTISRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVL 296

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y  +M    D  D  M    P +      I++ HI+SYR+LP    
Sbjct: 297 MNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSYRDLPLRVA 356

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++    +  
Sbjct: 357 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQTE-FAKILKLIMDVYKDFDITD 415

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 416 YYFRLS-------------YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGE 462

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G DG++H  
Sbjct: 463 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLTYVGQDGEEHRP 511

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            M     G +  +   I    +     +P  +AP ++ +I +        +  EK+   L
Sbjct: 512 VMIHR--GIVGTMERFIAYLTEIYKGAFPTWLAPVQVEIIPVNL--DAHGEYAEKVRQEL 567

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +K G     D   E++G +   +     P  +++G + + +  V ++   T      SL 
Sbjct: 568 AKRGFRAEVDTRNEKMGYKIRESQTQKVPYTLVLGDEEMKNGSVNVRRYGTDEEISKSLT 627

Query: 433 EVINYASHRFSNN 445
           + IN       + 
Sbjct: 628 DFINEIDADVKSY 640


>gi|167389590|ref|XP_001739012.1| threonyl-tRNA synthetase, cytoplasmic [Entamoeba dispar SAW760]
 gi|165897485|gb|EDR24628.1| threonyl-tRNA synthetase, cytoplasmic, putative [Entamoeba dispar
           SAW760]
          Length = 676

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 71/445 (15%), Positives = 144/445 (32%), Gaps = 36/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y     + + RD  +   +  L     H  S G   WLP G +  + +  +IR E  
Sbjct: 267 LKEYIKRAEEADKRDHRLIGRQQDLF--FFHVLSPGSCFWLPHGTRIYNKLVQLIRSEYR 324

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P +  + LW  SG +  Y  +M    +   +     P +      +F S  
Sbjct: 325 VLGYQEVITPNIFLSTLWETSGHWQHYKDDMFSF-ECEKQTFALKPMNCPGHCVMFASKK 383

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP  + +  +  R+EL     G+ R R F+  D++ F    +             
Sbjct: 384 RSYRELPLRYAEFGVLHRNELTGALHGLTRVRRFVQDDSHIFCTMDQIESEVT-----GV 438

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L +  ++                      I L+   E +     +  +          +D
Sbjct: 439 LNLMKKIYKIF-------------GFKTEIALSTRNEKKFMGEIETWNKAEAMLTQVLND 485

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I     A Y    D+  E   D+L    +V+   ++    F    ++ L   + 
Sbjct: 486 SHLPFVINPGDGAFYGPKIDIRIE---DALGRKHQVATVQLD----FQLPLRFKLDYMSE 538

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 K   +   +      R  A + E                     + +    +  
Sbjct: 539 DPNQPLKTPVMVHRAVLGSIERFTAILTEHLAGKWPFWLSPR-------QVMVCTVSEKY 591

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   KI   L+  G     DD   ++  +   A +  +   +++G + +  + V ++ R
Sbjct: 592 NEYGAKITKELNDAGFYADLDDSDNKLPKKIRNAQVAQYNFILVIGEEELVSNSVNVRTR 651

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            + +   +   E I +     ++ +
Sbjct: 652 KSKVEGKVEFSEFIKHLKQLEADKQ 676


>gi|300864298|ref|ZP_07109176.1| Prolyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
 gi|300337687|emb|CBN54322.1| Prolyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
          Length = 601

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 114/240 (47%), Positives = 150/240 (62%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E P +AEI SHKL+LR G I +   G+Y +LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFATLREEPAEAEIPSHKLLLRAGYIRRIGSGVYVYLPLLWRVLKKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA E  +P LQ A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MDATGAQECLLPQLQPAELWRESGRWDTYTKAEGIMFALTDRQNRELGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF    E  K +Y  M
Sbjct: 121 AKDMIRSYRQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHKDEESLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  +  R GL+   + A+SG IGG  S EF+VLA+ GE +V  ++D   +    E  
Sbjct: 181 AQAYSNMLRRCGLEFRGVDADSGAIGGSGSQEFMVLAEAGEDEVLYTEDGQ-YAANVEKA 239



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 105/200 (52%), Gaps = 3/200 (1%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSL--PENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +  +++  P         +K   +L  P     +ARGIEVGHIF  GTKYS  M AT+  
Sbjct: 400 NWGKEFQLPEKVVDVRKAKKGDRALHNPAQTLQTARGIEVGHIFQLGTKYSQAMGATYTN 459

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G++  + MG YG+G  R+  + +E S+D  GIIWP ++AP+++ +      D    + 
Sbjct: 460 EQGEEIPLVMGCYGLGVSRLAQSAVEQSYDKDGIIWPVAIAPYQVIISIPNISDAQQIEV 519

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            EK+Y  L++ G +   DD  E+ G +F  ADL+G P +++ G + +   KVE+  R   
Sbjct: 520 AEKLYTELNQAGVETLLDDRDERAGVKFKDADLIGIPYRIVTG-RSLKQGKVEVVERAAH 578

Query: 425 IREDMSLEEVINYASHRFSN 444
              ++++++V +      S 
Sbjct: 579 KSHEIAIDDVKSTLMQWIST 598


>gi|262037473|ref|ZP_06010933.1| proline--tRNA ligase [Leptotrichia goodfellowii F0264]
 gi|261748508|gb|EEY35887.1| proline--tRNA ligase [Leptotrichia goodfellowii F0264]
          Length = 576

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 124/236 (52%), Positives = 159/236 (67%), Gaps = 1/236 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK FL   +E P++AEI SH+LMLR  MI Q ++G+YS+LPLG K L  +  I+REE 
Sbjct: 8   RLSKAFLKTYKEAPKEAEIISHQLMLRASMIKQLTRGVYSYLPLGYKVLRKIENIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           NR  A E+ +P LQ A LW ESGR+ +YG E++RL DRN++    GPTHEEV+TDI R+ 
Sbjct: 68  NRANAQEIHMPVLQPASLWEESGRWFAYGPELMRLKDRNEREFALGPTHEEVVTDIVRNM 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY++LPF  YQIQ KFRDE+RPRFG+MR REFLMKDAYSF +  +     Y  M  +Y
Sbjct: 128 VSSYKDLPFNLYQIQTKFRDEMRPRFGLMRGREFLMKDAYSFHIDQKSLDEEYLNMKSAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            R+F R GL    + A+SG IGGD SHEF+VLAD+GE  +  S     +    E  
Sbjct: 188 ERVFIRCGLDFRAVEADSGSIGGDSSHEFMVLADSGEDDILYSD-VSGYAANIEKA 242



 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 77/207 (37%), Positives = 108/207 (52%), Gaps = 3/207 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
           +        V      Y   +D+   +  D  P+ K     ARGIEVGHIF  G KYS  
Sbjct: 371 NKKGYHYINVNLEDLAYDFVADIREARAGDGSPDGKGTLKVARGIEVGHIFKLGDKYSKA 430

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           ++AT    +GK   + MG YGIG  RV+AA IE +HD  GIIWP ++AP+ + +I     
Sbjct: 431 LNATVLDENGKQQIIAMGCYGIGISRVMAAAIEQNHDEFGIIWPKNIAPYLVDVIIANIK 490

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D+      EK+Y  L   G +   DD  E+ G +F  ADL+G PL+++VG K  ++ KVE
Sbjct: 491 DEAQFSLGEKLYKELCDNGIETVLDDRNERAGFKFKDADLIGIPLKIVVG-KGAAEGKVE 549

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           IK R TG   ++  EEV ++       
Sbjct: 550 IKDRRTGESREVKAEEVTDFVRRFIEE 576


>gi|126306083|ref|XP_001381501.1| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative) [Monodelphis domestica]
          Length = 475

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 148/456 (32%), Positives = 228/456 (50%), Gaps = 44/456 (9%)

Query: 3   RSKYFLPI---------LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S +F P          L+    +    S +LML+TG+IH    G Y +LP   +A++ +
Sbjct: 42  LSHFFQPQNLREDQVVGLESKSAEVTCKSQRLMLQTGLIHPAGPGCYHYLPYTVRAMEKL 101

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++ +PTL SA+LW  + R++  GKE+ RL DR++K    GPTHEEV
Sbjct: 102 VKVIDQEMQAIGGQKLDMPTLSSAELWRVTDRWNLMGKELFRLQDRHNKDYCLGPTHEEV 161

Query: 114 MT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T  +      SY+ LP+  YQI  KFRDE RPRFG++R REF MKD Y+FD + E +  
Sbjct: 162 ITSLMASQKTLSYKQLPYLLYQITRKFRDEPRPRFGLLRGREFYMKDMYTFDCSSEAAHQ 221

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +Y+ +  +Y R+F+RLGL+ + ++A  G IGG +SHEF +  + GE  +    +  +F  
Sbjct: 222 TYDLVCEAYGRVFNRLGLQFVRVQAAVGSIGGTMSHEFQLPLNIGEDVLAVCSNC-NFAA 280

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
             E  D  D                             + + K    +G+EVGH FY GT
Sbjct: 281 NVETLDPRDP-------------------------TCPVCQGKLTETKGVEVGHTFYLGT 315

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS   +A F  A GK   ++MG YG+G  R++AA IE     + I WP  +AP+++ LI
Sbjct: 316 KYSSVFNAEFINAQGKPSLLEMGCYGLGVTRILAAAIEMLSMEECIRWPSLLAPYQVCLI 375

Query: 353 NIKAHD------QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
             K         ++     + I   L ++  +V  DD     IG++   A+ LG+P  VI
Sbjct: 376 PPKKGSKEEMGIELMGTLYDDITEALPQLKGEVLLDDRIHLTIGNRLKDANKLGYPFVVI 435

Query: 406 VGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASH 440
            G +        E+  +       ++ + VI+    
Sbjct: 436 AGKRASEQPCHFEVWCQNNNEVVFLTKQAVIDLLRK 471


>gi|56696171|ref|YP_166527.1| threonyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
 gi|73919826|sp|Q5LTX8|SYT_SILPO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56677908|gb|AAV94574.1| threonyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
          Length = 648

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 143/438 (32%), Gaps = 45/438 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W P G      +   +R +Q R
Sbjct: 234 KAHLHMLEEAAKRDHRKLGREMDLF--HMQEEAPGQIFWHPNGWTIYTTLQDYMRRQQRR 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G +E++ P +    LW  SG ++ Y + M  +       R        P +      IF
Sbjct: 292 GGYVEVNTPQVVDRKLWEASGHWEKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVQIF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D + F    +    +  + 
Sbjct: 352 NQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIFCAEDQIESET-AEF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 I+  LG +   ++    P                      S    D    +  +
Sbjct: 411 IDFLSMIYKDLGFEKFSVKFSDRPDTR-----------------AGSDAVWDKAEAALLS 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     +     A Y    +     L D++  + +     ++    F    +    
Sbjct: 454 ATRAAGIEPELNPGEGAFYGPKLEF---VLTDAIGRDWQCGTHQVD----FVLPER---- 502

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ GADG  H    +    +G+      ++   H GK   W         S+     
Sbjct: 503 LDATYIGADGAKHRPVMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIT---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++ A L   G     D   E+I  +     +   P+ + VG + V +  V
Sbjct: 559 --SEADDYVREVVAELCAAGVRAEADTRNEKINYKVREHSVGKVPVILAVGHREVEERTV 616

Query: 417 EIKHRLTGIREDMSLEEV 434
            ++          SL +V
Sbjct: 617 SVRRLGEKQTSVQSLADV 634


>gi|15643280|ref|NP_228324.1| prolyl-tRNA synthetase [Thermotoga maritima MSB8]
 gi|81859132|sp|Q9WYY4|SYP_THEMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|4981026|gb|AAD35599.1|AE001727_11 prolyl-tRNA synthetase [Thermotoga maritima MSB8]
          Length = 577

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 108/227 (47%), Positives = 156/227 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    + P L+E P D E  SH+ +LR G I + + GIY++LPLG++ L  +  I+REE
Sbjct: 1   MRMKDLYAPTLKETPSDVETVSHEYLLRGGFIRKVAAGIYTYLPLGRRVLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P LQ A+LW +SGR+D YG EM++L DR+++    GPTHEE++TD+ ++
Sbjct: 61  MNRIGAQEILMPILQPAELWKQSGRWDDYGPEMMKLKDRHERDFTLGPTHEEIVTDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP T YQI  K+RDE+RPRFG++R+REF+MKDAYSF  + E    +Y +   +
Sbjct: 121 ELRSYKQLPLTLYQIANKYRDEIRPRFGLLRAREFIMKDAYSFHASWESLDETYEQFKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RI  RLG++ + + AE+G IGG+ SHEF+V A  GET V   +  
Sbjct: 181 YSRIMERLGVRYMIIEAETGAIGGNASHEFVVPAKIGETNVLFCEKC 227



 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/196 (32%), Positives = 98/196 (50%), Gaps = 7/196 (3%)

Query: 258 ATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+      D  P       + +GIE+GHIF  GTKYS  M A F   +G+     MG
Sbjct: 378 EWYDLRTVVEGDPCPVCGEPLKATKGIELGHIFKLGTKYSEAMKAYFMDENGEMKPFIMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG G  R +AAV+E  HD  G+IWP S+AP+ + +  +  +D   +   EKIY  LS+ 
Sbjct: 438 CYGWGVSRTMAAVVEHFHDENGMIWPLSIAPYTVVVDILNMNDAEQKQVGEKIYQVLSEK 497

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-- 433
           G +V  DD     G +F  ADL+GFP+++ VG + + +  VE+K R +     ++++   
Sbjct: 498 GEEVVLDDREVSPGFKFKDADLIGFPIRINVG-RSLKEGVVELKKRYSKELVKVNIKNGF 556

Query: 434 --VINYASHRFSNNRP 447
             ++           P
Sbjct: 557 GALLETLEKMKREYDP 572


>gi|320333471|ref|YP_004170182.1| threonyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
 gi|319754760|gb|ADV66517.1| threonyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
          Length = 649

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 149/448 (33%), Gaps = 42/448 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +Y   + +   RD      +L L    I     KG+  WLP G    + +   +RE+Q  
Sbjct: 236 EYLHRLEEAKKRDHRKLGRELELFV--IDPLVGKGLPMWLPNGTILREELTRFLREQQFA 293

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P + + +L+  SG Y +Y          +D+  +  P +      I+ S  +
Sbjct: 294 RGYQGVVTPNIGNLELYKTSGHYQNYSDSNFSPITVDDEQYMLKPMNCPHHVRIYASKPR 353

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +    +R E      G+ R R F   DA+ F   P+  K  +  +    +
Sbjct: 354 SYRDLPVRLAEFGTVYRYEQSGELNGLTRVRGFTQDDAHLFCR-PDQLKAEFLNVLDLTV 412

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G+  +  R  +               D   T+   ++D  +          +++
Sbjct: 413 LVLRTFGMNDVRFRVGTR--------------DPENTKYVGAEDNWNAAERQIIEAVEEV 458

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               SI     A Y    D     + D L    ++    ++                 ++
Sbjct: 459 GLPYSIEPGDAAFYGPKLDF---VVRDVLGREWQLGTIQVDYNLP--------ERFDISY 507

Query: 303 KGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            G DG DH   M          R V  +IE       +                      
Sbjct: 508 VGEDGADHRPIMIHRAPFGSLERFVGILIEHYGGDFPLWLAPRQVAIIPIA-------DR 560

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +    + A L   G     DD   ++ ++   A+L   P+ +IVG K     +V ++ 
Sbjct: 561 HNEYAYALEAELRAAGLRTEVDDSSNRMNAKVRAAELSKIPVMLIVGDKEQEGRQVSVRE 620

Query: 421 R---LTGIREDMSLEEVINYASHRFSNN 445
           R       R+ ++ +++      R+   
Sbjct: 621 RTPEGHKERKGVAFDDLKAELLERYRTR 648


>gi|293396370|ref|ZP_06640648.1| threonine-tRNA ligase [Serratia odorifera DSM 4582]
 gi|291421159|gb|EFE94410.1| threonine-tRNA ligase [Serratia odorifera DSM 4582]
          Length = 387

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 69/416 (16%), Positives = 137/416 (32%), Gaps = 38/416 (9%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + + + G+  W   G      + A +R +       E+  P +    LW ++G +++Y  
Sbjct: 1   MQEEAPGMVFWHNDGWTIFRELEAFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYKD 60

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVM 150
            M       ++     P +      IF   +KSYR+LP    +     R+E      G+M
Sbjct: 61  AMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMGEFGSCHRNEPSGSLHGLM 119

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R R F   DA+ F  T +  +   N+       ++   G + I ++  + P     + + 
Sbjct: 120 RVRGFTQDDAHIFC-TEDQVRAEVNECIRMVYDVYGTFGFEKIAVKLSTRPEKRIGTDDM 178

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              A+                         +            A Y    +     L D 
Sbjct: 179 WTRAE-----------------EDLAAALTENGIPFEYQPGEGAFYGPKIEF---TLHDC 218

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVI 329
           L    +     ++       G        A++ G + +    V +    +G+M     ++
Sbjct: 219 LDRAWQCGTVQLDFFLPGRLG--------ASYVGENNERVVPVMIHRAILGSMERFIGIL 270

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              + G    W   V    +++           D  +++  +L   G  V  D   E+IG
Sbjct: 271 TEEYAGFYPTWIAPVQVVVMNIT------DSQSDYVQQLTKKLQDAGIRVKADLRNEKIG 324

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +     L   P  ++ G K V   KV ++ R       + + EV++       + 
Sbjct: 325 FKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVNEVVDKLQKEIRSR 380


>gi|281411733|ref|YP_003345812.1| prolyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
 gi|281372836|gb|ADA66398.1| prolyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
          Length = 577

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 108/227 (47%), Positives = 156/227 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    + P L+E P D E  SH+ +LR G I + + GIY++LPLG++ L  +  I+REE
Sbjct: 1   MRMKDLYAPTLKETPSDVETVSHEYLLRGGFIRKVAAGIYTYLPLGRRVLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P LQ A+LW +SGR+D YG EM++L DR+++    GPTHEE++TD+ ++
Sbjct: 61  MNRIGAQEILMPILQPAELWKQSGRWDDYGPEMMKLKDRHERDFTLGPTHEEIVTDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP T YQI  K+RDE+RPRFG++R+REF+MKDAYSF  + E    +Y +   +
Sbjct: 121 ELRSYKQLPLTLYQIANKYRDEIRPRFGLLRAREFIMKDAYSFHASWESLDETYEQFKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RI  RLG++ + + AE+G IGG+ SHEF+V A  GET V   +  
Sbjct: 181 YSRIMERLGVRYMIIEAETGTIGGNASHEFVVPAKIGETNVLFCEKC 227



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 7/196 (3%)

Query: 258 ATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+      D  P       + +GIE+GHIF  GTKYS  M A F   +G+     MG
Sbjct: 378 EWYDLRTVVEGDPCPVCGEPLKATKGIELGHIFKLGTKYSEAMKAYFMDENGEMKPFIMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG G  R +AAV+E  HD  G+IWP S+AP+ + +  +  +D   +   E IY  LS+ 
Sbjct: 438 CYGWGVSRTMAAVVEHFHDENGMIWPLSIAPYTVVVDILNMNDAEQKQIGELIYQVLSEK 497

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-- 433
           G +V  DD     G +F  ADL+GFP+++ VG + + +  VE+K R +     ++++   
Sbjct: 498 GEEVVLDDREVSPGFKFKDADLIGFPIRINVG-RSLKEGVVELKKRYSKELVKVNIKNGF 556

Query: 434 --VINYASHRFSNNRP 447
             ++           P
Sbjct: 557 GALLETLEKMKREYDP 572


>gi|220931402|ref|YP_002508310.1| Threonyl-tRNA synthetase [Halothermothrix orenii H 168]
 gi|219992712|gb|ACL69315.1| Threonyl-tRNA synthetase [Halothermothrix orenii H 168]
          Length = 646

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 157/444 (35%), Gaps = 38/444 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           L +L+E   RD      +L L   M  +   +G+    P G K +  +   + +E+ + G
Sbjct: 233 LKMLEEAKKRDHNKLGRELDLF--MTEESIGQGLPLLKPKGAKVVQILQRFVEDEEEKRG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                 P +  +DL+  SG +D Y ++M      +++D+ +   P        I+ S ++
Sbjct: 291 YQLTKTPYMAKSDLYKISGHWDHYKEDMFILGDEEKDDEVLALRPMTCPFQFMIYNSKLR 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +    FR+E      G++R R+F + + +    TPE  +  +  +     
Sbjct: 351 SYRDLPLRYSETSTLFRNEASGEMHGLIRVRQFTISEGHIIC-TPEQLEEEFRGVVNLIN 409

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +   LG            I  D+ + F         +   +    +          D +
Sbjct: 410 YMMETLG------------IEDDIWYRFSKWDPDNREKYIDNPTAWEESQDKMKNILDKL 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    D+    +     +   +    I+    F    ++ +    T+
Sbjct: 458 NIDYVEAEGEAAFYGPKLDIQFRNVH---GKEDTIITVQID----FALPERFDM----TY 506

Query: 303 KGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D K      +    +G      A++   + G    W           + I       
Sbjct: 507 IDKDNKKKRPYVIHRTSVGCYERTLAMLIEKYAGAFPTW------LAPVQVEIIPVSDDQ 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L + G  V  DD  E++G +   A +   P  +IVG++ V +  V ++ R
Sbjct: 561 VDYAYEVKGILKEAGIRVEVDDTNEKLGYKIRQAQMEKIPYMLIVGNREVENRTVSVRDR 620

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    +S++E            
Sbjct: 621 KEGDLGAISIKEFKEKIVREVEEK 644


>gi|225447618|ref|XP_002270988.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 670

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 150/445 (33%), Gaps = 42/445 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   +E  R D       L L +  I  +   G+  W P G      +    ++   
Sbjct: 261 KAYLHFKEEAKRRDHRRLGQDLDLFS--IQDEAGGGLVFWHPKGAIVRHIIEDSWKKIHI 318

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +  ADLW  SG  D Y + M       D+     P +      I++  +
Sbjct: 319 EHGYDLLYTPHVARADLWKTSGHLDFYRENMYSQITIEDELYQLRPMNCPYHILIYKRKL 378

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+ P    ++   +R EL     G+ R R F   DA+ F L  +        +    
Sbjct: 379 HSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDE-IRGVLDLT 437

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I  + G     +   + P                  +   + D  +    +     DD
Sbjct: 438 EEILLQFGFSKYEVNLSTRP-----------------EKAVGADDIWEKATSALRDALDD 480

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D+L    + S   ++    F    ++      T
Sbjct: 481 KGWSYRIDEGGGAFYGPKIDL---KIEDALGRKWQCSTIQVD----FNLPQRFD----IT 529

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  ++ +      +    +G++     V+    +     +P  ++P +  ++ +      
Sbjct: 530 YVDSNSEKQRPIMIHRAVLGSLERFFGVLI---EHYAGDFPLWLSPIQARVLPVT---DT 583

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             + C ++  +L   G        GE++      ++    PL  +VG K V    V ++ 
Sbjct: 584 QLEYCNEVTNKLKANGIRAEV-CHGERLPKLIRNSEKQRIPLMAVVGPKEVETQTVTVRS 642

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    M +E+ I+       N 
Sbjct: 643 RFGGELGTMIVEDFISRTKSATENR 667


>gi|262402773|ref|ZP_06079334.1| prolyl-tRNA synthetase [Vibrio sp. RC586]
 gi|262351555|gb|EEZ00688.1| prolyl-tRNA synthetase [Vibrio sp. RC586]
          Length = 571

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 122/290 (42%), Positives = 168/290 (57%), Gaps = 20/290 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY L  L+E P DAE+ SHKLMLR GMI + + G+Y+WLP G + L  V  I+R+E
Sbjct: 1   MRTSKYLLSTLKETPNDAEVVSHKLMLRAGMIRKLASGLYTWLPTGLRVLRKVETIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GAIE  +P +Q  +LW E+GR +  G E+LR  DR+++  +  PT EEV+T + R+
Sbjct: 61  IDNAGAIETLMPVVQPFELWEETGRSEKMGPELLRFTDRHERPFVLSPTAEEVITALVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  +G + SY+ M  +
Sbjct: 121 EVNSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKDGLQKSYDAMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN---- 236
           Y + F R+GL   P+ A+SG IGG+ S EF VLA++GE  +       D+    E     
Sbjct: 181 YCKAFDRMGLDYRPVLADSGAIGGNGSQEFHVLAESGEDLIVF-STESDYAANIEKAEAL 239

Query: 237 ---------------TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                           D  +  ++  +VEQ   P   T      K  D++
Sbjct: 240 APATEAAAPTQEMTLVDTPNAKTIAELVEQHGLPIEKTVKTLFVKASDAI 289



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 68/190 (35%), Positives = 112/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  GT YS  M+     ++GK+  ++M
Sbjct: 382 GKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +     +  ++A EK+YA L+
Sbjct: 442 GCYGIGVSRVVAAAIEQNHDDYGIIWPDALAPFQVAIVPMNMHKSERVQEAAEKLYAELT 501

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E K+R  G +E +++E 
Sbjct: 502 AAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFEYKNRRQGEKEAVAMES 561

Query: 434 VINYASHRFS 443
           +I++   + +
Sbjct: 562 IIDFIQAKLA 571


>gi|150015022|ref|YP_001307276.1| prolyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|189083493|sp|A6LPP0|SYP_CLOB8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|149901487|gb|ABR32320.1| prolyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 570

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 123/265 (46%), Positives = 161/265 (60%), Gaps = 1/265 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR GMI + + G+Y+++PLG K L  V  IIREE
Sbjct: 1   MKMSNMLISTLREVPAEAEIDSHKLMLRAGMIRKMAAGVYNYMPLGLKVLKKVEDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     +  A+LW ESGR+D+YG EM RL DR D+    GPTHEEV TDI R+
Sbjct: 61  MNAAGAQEFLASAIIPAELWQESGRWDAYGAEMFRLKDRGDRDFCLGPTHEEVFTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD    G   +Y+KM  +
Sbjct: 121 EIKSYKQLPLNLYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDKDQGGLDLAYDKMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF+R GL +  + A+SG IGG  S EF+V ++ GE  V    +  ++    E     
Sbjct: 181 YVKIFNRCGLDAKCVAADSGAIGGSNSAEFMVKSEVGEDDVVFCSEC-NYAANIEKASSP 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
               L    ++        +   +E
Sbjct: 240 AEKELKQEFKEINKVETPNTKTIDE 264



 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/210 (35%), Positives = 109/210 (51%), Gaps = 4/210 (1%)

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSL 296
            ++     + V           D  N    +  P    K   ARG EVGHIF  GTKYS 
Sbjct: 359 ANETGYHINNVNYGRDFEGVIGDYRNVTEGEKCPVCGGKVTIARGTEVGHIFKLGTKYSE 418

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            M+A F   DGK+    MG YGIG  R +A++IE  HD  GI+WP SVAP+ +S+I +  
Sbjct: 419 AMNAKFIDEDGKEKPFIMGCYGIGVTRTMASIIEQHHDENGIVWPLSVAPYHVSVIPVNV 478

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D+       +IY +L+  G +   DD  E+ G +F  ++L+G P+++ VG K ++D ++
Sbjct: 479 KDEEQARIANEIYEKLTSAGIEALLDDRNERAGVKFKDSELMGIPMRITVGKK-INDGEI 537

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           E K R  G  E + +E+V N     F  N+
Sbjct: 538 EFKLRD-GEMEVIKIEDVYNIIKGEFEKNK 566


>gi|84516459|ref|ZP_01003818.1| threonyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
 gi|84509495|gb|EAQ05953.1| threonyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
          Length = 648

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 144/442 (32%), Gaps = 44/442 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      ++ L    + + + G   W P G      +   +R  Q   G 
Sbjct: 237 LHRLEEAAKRDHRKLGREMNLF--HMQEEAPGQVFWHPDGWTIYTELQDYMRRRQRAGGY 294

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSH 121
           +E++ P +    LW +SG +D Y + M  +       R        P +      IF   
Sbjct: 295 VEVNTPQVVDRKLWEKSGHWDKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVQIFNQG 354

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +KSYR+LP    +     R E      G+MR R F   D + F    +    +  +    
Sbjct: 355 LKSYRDLPLRMAEFGSCARYEPSGALHGIMRVRGFTQDDGHIFCREDQIEPET-ARFIAF 413

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             R++  LG     ++  + P     S     + +       C     DF +        
Sbjct: 414 LSRVYADLGFNDWTIKLSTRPEQRIGSDATWDMMEKALGD-ACRAAGYDFEL-------- 464

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   +E   A Y    +     L D++  N +     ++              + A
Sbjct: 465 --------LEGEGAFYGPKLEF---TLTDAIGRNWQCGTLQVDANLP--------ERLDA 505

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G DG+ H    +    +G+      ++   H GK   W         +++       
Sbjct: 506 EYIGTDGEKHRPVMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVATIV------S 559

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D    + A L+  G     D   E+I  +     +   P+ + VG++ V +     +
Sbjct: 560 DADDYARDLVAALTAAGVRAEADTRNEKINYKVREHSVGKVPVILAVGAREVEERTATAR 619

Query: 420 HRLTGIREDMSLEEVINYASHR 441
                    ++++E++     R
Sbjct: 620 QLGETQTRVVTMDEIVAELKQR 641


>gi|209884754|ref|YP_002288611.1| threonyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
 gi|209872950|gb|ACI92746.1| threonyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
          Length = 680

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 136/443 (30%), Gaps = 39/443 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      ++ L      +   G+  W   G      + A +R       
Sbjct: 256 YLKQLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWTVFQEIIAYMRRRL-AAD 312

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M       D     +     P +      IF+ 
Sbjct: 313 YDEVNAPQMLDKSLWETSGHWEWYRENMFAAQSAGDEAEDKRWFAIKPMNCPGHVLIFKH 372

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR LP    +  +  R E      G+MR R F   DA+ F    + ++       +
Sbjct: 373 GLKSYRELPIRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIFCTEQQLAEECLKINDL 432

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                        + ++  + P     S      A++       +         S N   
Sbjct: 433 ILSTYADFGFEGELTVKLSTRPDKRVGSDAAWDHAES-----VMTTVLEQIKAKSGNRIT 487

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             I           A Y    +     L D++    +     ++      FG        
Sbjct: 488 TSI------NPGEGAFYGPKFEY---VLRDAIGREWQCGTTQVDFNLPERFG-------- 530

Query: 300 ATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +      K   V +     G++   A ++   + G   +W   V     ++ +     
Sbjct: 531 AFYIDEHSNKVAPVMVHRAICGSLERFAGILIEHYAGHFPLWLAPVQAVITTITSDGD-- 588

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   +++      G  V  D   E+I  +     L   P  ++VG K      V I
Sbjct: 589 ----DYAREVFEACRAAGLRVDIDLRNEKINYKVREHSLAKVPALLVVGKKEAETRAVSI 644

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +         + L+E +   +  
Sbjct: 645 RRLGKEGSSVVPLDEALKALTTE 667


>gi|16800424|ref|NP_470692.1| prolyl-tRNA synthetase [Listeria innocua Clip11262]
 gi|81853975|sp|Q92C35|SYP_LISIN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|16413829|emb|CAC96587.1| prolyl-tRNA synthetase [Listeria innocua Clip11262]
          Length = 568

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 120/271 (44%), Positives = 164/271 (60%), Gaps = 1/271 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  + AI+REE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQVASGIYSYLPLATLTLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA EM +P LQ A+LW ESGR+  YG E++RL DR  +  + GPTHEE++T + R 
Sbjct: 61  LEAIGAAEMLMPALQPAELWHESGRWADYGPELMRLKDRAARDFVLGPTHEELITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E    ++  M  +
Sbjct: 121 EIKSYKRLPITLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDETFELMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S    D+   +E     
Sbjct: 181 YSNIFSRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSD-ASDYAANTEMAPVL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +   +  +E+     A  +      + + L
Sbjct: 240 YMEKKSHELEKELEKVATENQKTIADIVEFL 270



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   +  D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 383 DLRMIQAGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G++W   ++PF + LI +    +      E +Y  L K G  
Sbjct: 443 IGLSRILSAIAEQSNDENGLVWDKQISPFDLHLIPVNMKSEEQVAFAESLYDSLQKAGFS 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N  
Sbjct: 503 VLIDDRTERAGVKFADADLIGLPIRITVGKK-AAEGIVEVKIRKTGEMIEVRQDELLNTL 561


>gi|162147243|ref|YP_001601704.1| threonyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544293|ref|YP_002276522.1| threonyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|189083610|sp|A9HFP5|SYT_GLUDA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161785820|emb|CAP55391.1| Threonyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531970|gb|ACI51907.1| threonyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 641

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 87/427 (20%), Positives = 143/427 (33%), Gaps = 41/427 (9%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E  R D      ++ L    I + + G   W P G +    +   +R  Q R G 
Sbjct: 233 LHRLEEAERRDHRRIGREMDLF--HIQEEAVGSIFWHPKGWRLYTALQDYMRRAQTRGGY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            E+  P L    LW  SG +D Y + M     +  DK +   P +      IFR  ++SY
Sbjct: 291 QEVRTPQLVDRALWEASGHWDKYREHMFIATVEDEDKTLALKPMNCPCHVQIFRHGLRSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R E      G+MR R F   DA+ F  T         +       +
Sbjct: 351 RELPLRMAEFGACHRYEPSGALHGIMRVRSFTQDDAHIFC-TESQIAAETARFVRMLAEV 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +  LG +S  ++    P     S E                   D    +          
Sbjct: 410 YADLGFESFRVKFADRPEQRAGSDE-----------------TWDRAEGALIEACRLAGV 452

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D++  + +     ++              + A+F G
Sbjct: 453 EYEYNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVDYVLP--------ERLDASFVG 501

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D   H    +    +G+      ++   H G+  +W   V     S++           
Sbjct: 502 EDSARHRPVMLHRAILGSFERFLGILIEQHAGRFPLWLAPVQVVVASIVT------DAAP 555

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++   L++ G  V  D   E+I ++     L   P+ ++VG K   D  V I+    
Sbjct: 556 YAEQVAETLTQAGLVVETDIRNEKINAKVREHSLARVPVILVVGRKEAEDGTVAIRRLGG 615

Query: 424 GIREDMS 430
             +E MS
Sbjct: 616 AAQEVMS 622


>gi|108804139|ref|YP_644076.1| Ser-tRNA(Thr) hydrolase/threonyl-tRNA synthetase [Rubrobacter
           xylanophilus DSM 9941]
 gi|123368184|sp|Q1AWG4|SYT_RUBXD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|108765382|gb|ABG04264.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 639

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 135/448 (30%), Gaps = 34/448 (7%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ + +L  L+E   RD      +L L T        GI  +LP G+     +   +RE 
Sbjct: 223 KQLRAYLKRLEEARARDHRRLGRELGLFTFAPEDVGPGIPLFLPKGETLRHLMEGFVREV 282

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           Q R G   +    L +  L+  SG  + Y   M       + +    P +      +F S
Sbjct: 283 QTRHGYQHVWTGHLVNERLYARSGHLEHYRDAMFPPMRDGEVSYRLKPMNCPSHMTLFNS 342

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SYR LP  + +    +R E       +     L +D      T E  +  + +    
Sbjct: 343 RPRSYRELPVRYAEFATLYRYEKSGELSGLTRVRSLTQDDAHVFCTEEQVQEEFARALAI 402

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +    G     +R                  D    +    ++       +     D
Sbjct: 403 IREVLDAYGFTDYRVRLSLR--------------DPEGGKYIADEEKWGRAEGALRAALD 448

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                        A Y   +D       D L    ++S   ++       G         
Sbjct: 449 AAGIDYEPAPGEAAFYGPKADFM---ARDVLGREWQLSTIQVDFIQPGRLG--------C 497

Query: 301 TFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G DG+ H    +     G      AV+   + G   +W   V    I +        
Sbjct: 498 EYVGEDGERHTPVLLHRAVTGTTERFMAVLIEHYAGAFPVWLSPVQAVVIPVA------D 551

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   ++   LS+ G  V  DD    +  +         P  +IVG +      V ++
Sbjct: 552 RHLEYARRVREELSEGGLRVEVDDSPNSMQKKIRENARQKTPYLLIVGDREEEAGTVNVR 611

Query: 420 HRLTGI-REDMSLEEVINYASHRFSNNR 446
            R  G  + +M L   +       +  R
Sbjct: 612 RRGEGKRQTEMGLRGFLERVRGEVAARR 639


>gi|319649526|ref|ZP_08003682.1| prolyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317398688|gb|EFV79370.1| prolyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 567

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 118/282 (41%), Positives = 170/282 (60%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P DAE  SH+L+LR G I Q++ GIYS++PL +K L  V AIIREE
Sbjct: 1   MKQSMTLIPTLKEVPADAETRSHQLLLRAGFIRQNASGIYSYMPLAKKVLQKVEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P LQ A+LW ESGR+ +YG E++R+ DR+++    G THEEV+T + R 
Sbjct: 61  MDNAGAVELLMPALQQAELWQESGRWYTYGPELMRMKDRHEREFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF    E     Y+K+F +
Sbjct: 121 AVKSYKKLPLALYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHSNQESLDEMYDKLFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R GL    + A+SG +GG  +HEF+VL++ GE  +  S    ++    E     
Sbjct: 181 YSNVFRRCGLNFRAVIADSGAMGGKDTHEFMVLSEVGEDTIAYSDT-SEYAANIEMAPVL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              S ++   Q     A  +    E++   L   K    + +
Sbjct: 240 AQYSKSNEEPQELEKAATENKKTIEEVSTFLNVAKEQCIKTL 281



 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 111/221 (50%), Gaps = 3/221 (1%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA-- 279
             +   ++  +       ++ I   +            +D+   +  D  P+ +      
Sbjct: 343 IIADHAVEAIVNGVCGANEEGIHYVNANPDRDFYVTRYADLRFIQEGDPSPDGQGTIQFA 402

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  GT+YS  M ATF   +G+   + MG YGIG  R +AAV E   D  G I
Sbjct: 403 KGIEVGHIFKLGTRYSEAMEATFLDENGRTQPMIMGCYGIGVSRTMAAVAEQFSDENGFI 462

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP S+APF + LI I   D+      E++Y  L +   DV  DD  E+ G +FA +DL+G
Sbjct: 463 WPRSLAPFDLHLIPINMKDETQSAVAEELYTMLKRDRYDVLMDDRQERPGVKFADSDLIG 522

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            P+++ VG K  S+  VE+K R TG  +++  +++ +  + 
Sbjct: 523 LPIRITVGKK-ASEGIVEVKVRKTGEMQEIHKDQLADKIAE 562


>gi|253576294|ref|ZP_04853624.1| prolyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844187|gb|EES72205.1| prolyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 571

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 121/238 (50%), Positives = 154/238 (64%), Gaps = 2/238 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+   P L+E P DAE ASH+ +LR G I Q + GIYS+LPLG+K L  +  I+REE
Sbjct: 1   MRQSRLLSPTLREAPSDAEAASHQHLLRAGYIRQLAAGIYSYLPLGRKVLLRIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P +Q A+LW  SGRY+ YG E++R  DR+D+    GPTHEEV+T + R 
Sbjct: 61  MNRAGAQELLLPAMQPAELWQRSGRYERYGPELIRFKDRHDREFALGPTHEEVITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP T YQIQ KFRDE RPRFG++R REFLMKDAYSFD    G   +Y  M  +
Sbjct: 121 EVNSYRQLPLTVYQIQTKFRDERRPRFGLLRGREFLMKDAYSFDTDWTGLDRAYQSMVSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y +IF R GLK   + A+ G IGG+  +HEF+ LAD GE  V       D+    E  
Sbjct: 181 YEKIFRRCGLKFRAVEADPGTIGGEGGTHEFMALADIGE-DVVAVCGNCDYAANLEKA 237



 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/189 (38%), Positives = 104/189 (55%), Gaps = 4/189 (2%)

Query: 253 TAPYAATSDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
             P A+  D  N    D+ P  K       RGIEVGH+F  GT+YS  + A F  A G  
Sbjct: 378 DVPEASIGDFRNVVNGDACPRCKEGRLQLLRGIEVGHVFKLGTRYSEQLGAVFLDAQGHQ 437

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             + MG YGIG  R+++A+ E  HD  G+IWP S+AP+++ +I I   + +  +   ++Y
Sbjct: 438 QPMIMGCYGIGLSRLMSAIAEQHHDEHGLIWPVSIAPYQVHIIPISVTNPLQMELALQLY 497

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L++ G DV  DD  E+ GS+F  ADL+G P +VI+G K     +VE   R    RE +
Sbjct: 498 EKLTQAGIDVLLDDRDERPGSKFHDADLIGIPYRVIIG-KSAEQGQVEWVERNIMKRELI 556

Query: 430 SLEEVINYA 438
           SLEE I   
Sbjct: 557 SLEEAIQRI 565


>gi|195941538|ref|ZP_03086920.1| threonyl-tRNA synthetase (thrZ) [Borrelia burgdorferi 80a]
 gi|312149456|gb|ADQ29527.1| threonyl-tRNA synthetase [Borrelia burgdorferi N40]
          Length = 581

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 156/443 (35%), Gaps = 37/443 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L + +E   RD      +L L +    +   G+  + P G K    +    REE ++
Sbjct: 172 RSYLNLREEIKKRDHRKLGKELDLFSIH-EEIGPGLVFFHPNGAKIRALIEDFWREEHSK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y   M    + +       P +      I+ +   
Sbjct: 231 NGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYNTGKH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G+MR+R F   DA+      +       ++    +
Sbjct: 291 SYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHIICTHSQVLDE-IKEVLRFAI 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G  ++     + P                  +   +    +  +        D 
Sbjct: 350 YMWSKFGFSNLKAYLSTKP-----------------DKSVGNDSDWEMSLKVLEETLSDF 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I +   A Y    D+   K+ DSL    ++S    +    F    ++++  +A  
Sbjct: 393 EVPYEIDKGGGAFYGPKIDL---KIVDSLEREWQMSTIQFD----FNLPERFNMTYTAE- 444

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +     +    +G++     ++   + G   +W   V    I + NI        
Sbjct: 445 --DGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLWLSPVQVVIIPVNNI------VE 496

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K++ +    G  +  D+   ++ ++         P   I+G +  ++ ++ I+ R 
Sbjct: 497 DYAIKVFNKFKNEGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREATEERISIRTRT 556

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 + L+E + +   +  + 
Sbjct: 557 NEQINGIKLDEALKFILFKIRDK 579


>gi|258647088|ref|ZP_05734557.1| threonine--tRNA ligase [Prevotella tannerae ATCC 51259]
 gi|260853035|gb|EEX72904.1| threonine--tRNA ligase [Prevotella tannerae ATCC 51259]
          Length = 647

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 152/444 (34%), Gaps = 39/444 (8%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L +L+E  R D      ++ L   M  +   KG+  WLP G      + + +R+ Q R 
Sbjct: 232 YLQLLEEAKRRDHRKIGREMELF--MFSELVGKGLPIWLPKGTVLRQQLMSFLRKIQKRF 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G +E+  P + S +L+V SG Y  YGK+  +        +  +  P +      ++    
Sbjct: 290 GYMEVITPHIGSKNLYVTSGHYAKYGKDSFQAIHTPEEGEEYMLKPMNCPHHCAVYSWQP 349

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY++LP    +    +R E      G+ R R F   DA+ F    +  +  + ++    
Sbjct: 350 HSYKDLPLRIAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCRPDQVKQE-FLRVMDII 408

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + +F  L  +    +                       +   S D  D    +     ++
Sbjct: 409 MIVFRALNFEQFEAQISLRDKVKRE-------------KYIGSDDVWDKAEQAIIEACEE 455

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I     A Y    D     + D+L    ++    ++                  
Sbjct: 456 KGLQAKIEYGEAAFYGPKLDFM---VKDALGRRWQLGTIQVDYNLP--------ERFQLE 504

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G D K H    +     G++    AV+     G   +W             I    + 
Sbjct: 505 YTGEDSKKHRPVMIHRAPFGSLERFTAVLIEHTGGHFPLW------LMPDQCVILPISER 558

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   K+  +L   G     D+  E++G +    ++   P  ++VG K  +D  V ++ 
Sbjct: 559 FNDYAHKVKEQLEAAGIRANIDERNEKVGRKIRDNEMKHIPYLLVVGEKEQADGSVNVRK 618

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           +  G +E M++           + 
Sbjct: 619 QGEGTQETMTIPMFAEKVLKEVAE 642


>gi|216264494|ref|ZP_03436486.1| threonyl-tRNA synthetase [Borrelia burgdorferi 156a]
 gi|215980967|gb|EEC21774.1| threonyl-tRNA synthetase [Borrelia burgdorferi 156a]
          Length = 581

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 156/443 (35%), Gaps = 37/443 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L + +E   RD      +L L +    +   G+  + P G K    +    REE ++
Sbjct: 172 RSYLNLREEIKKRDHRKLGKELDLFSIH-EEIGPGLVFFHPNGAKIRALIEDFWREEHSK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y   M    + +       P +      I+ +   
Sbjct: 231 NGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYNTGKH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G+MR+R F   DA+      +       ++    +
Sbjct: 291 SYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHIICTHSQVLDE-IKEVLRFAI 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G  ++     + P                  +   +    +  +        D 
Sbjct: 350 YMWSKFGFSNLKAYLSTKP-----------------DKSVGNDSDWEMSLKVLEETLSDF 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I +   A Y    D+   K+ DSL    ++S    +    F    ++++  +A  
Sbjct: 393 EVPYEIDKGGGAFYGPKIDL---KIVDSLEREWQMSTIQFD----FNLPERFNMTYTAE- 444

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +     +    +G++     ++   + G   +W   V    I + NI        
Sbjct: 445 --DGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLWLSPVQVVIIPVNNI------VE 496

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K++ +    G  +  D+   ++ ++         P   I+G +  ++ ++ I+ R 
Sbjct: 497 DYAIKVFNKFKNEGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREATEERISIRTRT 556

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 M L+E + +   +  + 
Sbjct: 557 NEQINGMKLDEALKFILFKIRDK 579


>gi|312132188|ref|YP_003999528.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Leadbetterella
           byssophila DSM 17132]
 gi|311908734|gb|ADQ19175.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Leadbetterella
           byssophila DSM 17132]
          Length = 650

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 157/439 (35%), Gaps = 36/439 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L + T    +  KG+  WLP G    + +   ++  Q R+G + +  P
Sbjct: 239 AKRRDHRKLGAELEIFT-FSEKVGKGLPLWLPKGAMLRERLENFLKRAQLRSGYLPVVTP 297

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            + S  L+V SG +D YG++  +        +  +  P +     +IF+S  +SYR+LP 
Sbjct: 298 HIGSKQLYVTSGHWDKYGEDSFQPIKTPEEGEEFMLKPMNCPHHCEIFKSKPRSYRDLPL 357

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +    +R E      G+ R R F   DA+ F    +     + K+    L +F  LG
Sbjct: 358 RLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCANDQVEDE-FKKVIDLVLYVFKSLG 416

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                 +     +                ++   S +  D    +      +      + 
Sbjct: 417 FDDYSAQVSLRSLE-------------NRSKYIGSDEDWDKAEKAIVNAAAEKGLKTVVE 463

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D     + D+L    ++    ++                  + G+D + 
Sbjct: 464 YGEAAFYGPKLDFM---VKDALGRKWQLGTIQVDYNLP--------KRFDLEYVGSDNQK 512

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H    +     G+M    A++  +  G    W           I +    +   D   ++
Sbjct: 513 HRPVMIHRAPFGSMERFIAILLENTAGNFPFW------LSPEQIAVLPISEKYEDFANEV 566

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +  L +     + D   E+I  +   A++   PL +IVG K   + +V ++ +  G    
Sbjct: 567 FLILQENDIRGYIDHRAEKISRKIRDAEVAKVPLMLIVGEKEQEEGRVSVRKKGEGDLGS 626

Query: 429 MSLEEVINYASHRFSNNRP 447
            S++E I +A +  + N P
Sbjct: 627 FSVQEFIEFAKNEINKNIP 645


>gi|291440752|ref|ZP_06580142.1| threonyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291343647|gb|EFE70603.1| threonyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 658

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 138/439 (31%), Gaps = 36/439 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     H+L L + +  Q   G+  + P G      +    R      G   +  
Sbjct: 254 EAEKRDHRKLGHELDLFS-IPEQIGSGLAVFHPKGGIVRRVMEDYSRRRHEEEGYEFVYT 312

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+  SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 313 PHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 372

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R+R F   DA+ +    + S+   +K     L +    G
Sbjct: 373 RLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTREQMSEEL-DKTLTFVLNLLRDYG 431

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +                    +   + +  +    +     +         
Sbjct: 432 LTDFYLELST----------------KDPEKFVGTDEAWEEATETLRQVAEKQGLPLVPD 475

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++    F    ++ L  +A       K 
Sbjct: 476 PGGAAFYGPKI---SVQAKDAIGRTWQMSTIQLD----FNLPERFDLEYTAA---DGSKT 525

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +     G++    AV+    +     +P  +AP +   I I        +  EK  
Sbjct: 526 RPVMIHRALFGSIERFFAVLL---EHYAGAFPAWLAPVQAVGIPIG---DAHVEHLEKFA 579

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A   K G  V  D   +++  +   A     P  VI G + +++  V  ++R       +
Sbjct: 580 AAARKQGLRVEVDSSSDRMQKKIRNAQKQKVPFMVIAGDEDMANGAVSFRYRDGSQENGI 639

Query: 430 SLEEVINYASHRFSNNRPV 448
            ++E I            V
Sbjct: 640 PVDEAIAKIVKVVEERAQV 658


>gi|225551832|ref|ZP_03772775.1| threonyl-tRNA synthetase [Borrelia sp. SV1]
 gi|225371627|gb|EEH01054.1| threonyl-tRNA synthetase [Borrelia sp. SV1]
          Length = 581

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 156/443 (35%), Gaps = 37/443 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L + +E   RD      +L L +    +   G+  + P G K    +    REE ++
Sbjct: 172 RSYLNLREEIKKRDHRKLGKELDLFSIH-EEIGPGLVFFHPNGAKIRALIEDFWREEHSK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y   M    + +       P +      I+ +   
Sbjct: 231 NGYDILFTPHVGKSWLWQTSGHLDFYKDSMFAKIEMDKSDYYLKPMNCPFHIAIYNTGKH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G+MR+R F   DA+      +       ++    +
Sbjct: 291 SYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHIICTHSQVLDE-IKEVLRFAI 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G  ++     + P                  +   +    +  +        D 
Sbjct: 350 YMWSKFGFSNLKAYLSTKP-----------------DKSVGNDSDWEMSLKVLEETLSDF 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I +   A Y    D+   K+ DSL    ++S    +    F    ++++  +A  
Sbjct: 393 EVPYEIDKGGGAFYGPKIDL---KIVDSLEREWQMSTIQFD----FNLPERFNMTYTAE- 444

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +     +    +G++     ++   + G   +W   V    I + NI        
Sbjct: 445 --DGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLWLSPVQVVIIPVNNI------VE 496

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K++ +    G  +  D+   ++ ++         P   I+G +  ++ ++ I+ R 
Sbjct: 497 DYAIKVFNKFKNEGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREATEERISIRTRT 556

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 + L+E + +   +  + 
Sbjct: 557 NEQINGIKLDEALKFILFKIRDK 579


>gi|150019972|ref|YP_001305326.1| prolyl-tRNA synthetase [Thermosipho melanesiensis BI429]
 gi|166980168|sp|A6LJ40|SYP_THEM4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|149792493|gb|ABR29941.1| prolyl-tRNA synthetase [Thermosipho melanesiensis BI429]
          Length = 564

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 107/252 (42%), Positives = 159/252 (63%), Gaps = 2/252 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+ENP DAEI S  L+ R G I + + G+Y++LPL ++ L  +  I+REE
Sbjct: 1   MRFSQLYAPTLRENPADAEIPSQALLQRAGFIRKIAAGVYTYLPLARRTLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P +Q A+LW++SGR+D YG EM++L DR+++    GPTHEE++T++ ++
Sbjct: 61  MDRIGAQEILMPIIQPAELWIKSGRWDDYGPEMMKLKDRHNRDFTLGPTHEELVTELVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP T YQI  K+RDE+RPRFGV+R+REF+MKDAYSF  + E     Y K   +
Sbjct: 121 ELNSYKQLPVTLYQIANKYRDEIRPRFGVLRAREFIMKDAYSFHDSWESLDEVYKKFKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RI  R+GL+   + A SG IGG  SHEF+  A+ GE+ +        +    E   + 
Sbjct: 181 YSRILERIGLRYTVIEASSGAIGGKESHEFVAFAEYGESNILYCDCG--YAGSDEKVPYM 238

Query: 241 DIISLNSIVEQW 252
               +    E+ 
Sbjct: 239 GEYEVFDEDEKE 250



 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 73/190 (38%), Positives = 99/190 (52%), Gaps = 8/190 (4%)

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +  VE+W     A   V N      +      S RGIE+GHIF  GTKYS  M   +   
Sbjct: 373 DFQVEEW-----ADLVVVNPGEPCPVCGKPLKSERGIELGHIFKLGTKYSETMDVKYMNK 427

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           DGK     MG YG G  R + A++E  HD  GIIWP SVAP+++ +  +   ++  +   
Sbjct: 428 DGKMKPFIMGCYGWGISRTLGAIVEQLHDDNGIIWPVSVAPYEVVITVVGKENE--KSFA 485

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           EK+Y  L   G DV  DD     G +F  ADL+GFPL++ +G K   D KVE+K R+  +
Sbjct: 486 EKLYRYLLDKGVDVLIDDRDVSPGVKFKDADLIGFPLRITIG-KSYKDGKVELKERVGNV 544

Query: 426 REDMSLEEVI 435
               + EEVI
Sbjct: 545 TIIEADEEVI 554


>gi|325848534|ref|ZP_08170194.1| threonine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480762|gb|EGC83819.1| threonine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 641

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 139/442 (31%), Gaps = 42/442 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++ + +E  R D      ++ L +   H+ + G   +   G      +     +     G
Sbjct: 233 YIKLQEEAKRRDHRRIGKEMNLFS--FHEEAPGFPFFKENGMILRHELLNWWTDVLAENG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M      + +     P +      ++     SY
Sbjct: 291 YGEIQTPLIMNEELWHRSGHWDHYKENM-YFTKIDGENYAVKPMNCPGSVLVYGEEPHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R EL     G+ R R F   DA+ + L  +     +         +
Sbjct: 350 RDLPIRLAEYGQVHRHELSGALHGLFRVRTFTQDDAHVYCLPSQVKDEVFKM-IDLADLL 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K       + P       E                   DF   +      +   
Sbjct: 409 YSTFGFKYKI-ELSTRPDDFMGKIE-----------------EWDFAEKALEDALKERGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I  +  A Y    D H E            + R  + G I     +       T+  
Sbjct: 451 DYQINPKDGAFYGPKIDFHLEDA----------AKRTWQCGTI-QLDFQLPQNFDLTYID 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G+      +    +G++      +     G+  +W           + I        D
Sbjct: 500 ENGEKKRPVMLHRALLGSVERFIGSVTEQFAGRFPLW------INPKQVAIIPVSDKFAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +  ++ K G  V  D   E +G +   A L+     ++VG       K+ +++R  
Sbjct: 554 FADDLAKKIKKAGYRVDVDHRSEGVGYKIRQAQLMRTNYMLVVGENEEKSGKLTVRNRDG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              +D+S EE I   +    + 
Sbjct: 614 EETKDVSFEEFIEKLNQERDSK 635


>gi|67922129|ref|ZP_00515644.1| Prolyl-tRNA synthetase, bacterial [Crocosphaera watsonii WH 8501]
 gi|67856029|gb|EAM51273.1| Prolyl-tRNA synthetase, bacterial [Crocosphaera watsonii WH 8501]
          Length = 602

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 112/240 (46%), Positives = 151/240 (62%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P LQ ++LW ESGR+++Y K    M  L DR ++ +  GPTHEEV+T +
Sbjct: 61  MNAAGAQECLLPQLQPSELWKESGRWETYTKAEGIMFSLIDRQERELGLGPTHEEVITTV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF+      + SY  M
Sbjct: 121 AKDMIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFNEDEASLQKSYEAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  I  R GL    + A+SG IGG  S EF++LA+ GE +V  ++D   +    E  
Sbjct: 181 DRAYRNIISRCGLAYRAVEADSGAIGGSASQEFMILAEAGEDEVLYTEDG-KYAANIEKA 239



 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 97/175 (55%), Gaps = 1/175 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     SARGIEVGHIF  GTKYS  M ATF   +G +  + MG YG+G  R+  A +E 
Sbjct: 427 PSQILASARGIEVGHIFQLGTKYSQAMGATFTDENGAEKPIVMGCYGVGVSRLAQASVEQ 486

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GIIWP ++ P+   +I     D+   +  + +Y +L+K+G +   DD  E+ G +
Sbjct: 487 SYDKDGIIWPVAITPYHAIIIVPNIKDKNQMEVAQNLYNQLNKIGVETLLDDRDERAGVK 546

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           F  ADL+G P +V+ G + +   KVE+  R T   +++ +  ++    +   N +
Sbjct: 547 FKDADLIGIPYRVVTG-RSLKAGKVEVVTRQTKESQEIEVTNLVETLKNWLKNIK 600


>gi|315639344|ref|ZP_07894506.1| threonine--tRNA ligase [Campylobacter upsaliensis JV21]
 gi|315480670|gb|EFU71312.1| threonine--tRNA ligase [Campylobacter upsaliensis JV21]
          Length = 602

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 158/443 (35%), Gaps = 38/443 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD     ++L L T    Q   G+  WL  G +    +  ++ +   
Sbjct: 194 LKEYLHIIEEAKKRDHRKLGNELKLFT-FDEQIGGGLPIWLSNGARLRSKLEQMLYKIHR 252

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P L  A+ W  SG Y +Y + M    + +++     P +      I+++ +
Sbjct: 253 LRGYEPVRGPELLKAEAWKISGHYANYKENM-YFTNIDEQEYGIKPMNCVGHIKIYQNEV 311

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++    
Sbjct: 312 RSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILDFV 370

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                               +      E+ +   T   +    +   +    +     D+
Sbjct: 371 ------------------ASLMKIFDFEYEMEISTRPEKAIGDEAIWEVATKALKEALDE 412

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D+L    +     ++      F  +Y+   +A 
Sbjct: 413 QGLKYGIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDFNLPERFELEYTSSENAK 469

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                  +  V +    +G+      ++            +       + + I    +V 
Sbjct: 470 -------ERPVMLHRAILGSFERFIGILTEHC------AGEFPFFIAPTQVGIVPISEVH 516

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               + I   L ++G D    D  E +  +   A+    P+ +++G + +S+  V ++ R
Sbjct: 517 LAYAKGIQRTLLEMGVDSEIYDKNESLSKKIRNAEKQKLPMILVIGDEELSNRAVALRDR 576

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
               ++ +SL+E +N    + + 
Sbjct: 577 RAKEQKSLSLDEFMNLIKEKINE 599


>gi|237752912|ref|ZP_04583392.1| threonyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375179|gb|EEO25270.1| threonyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
          Length = 605

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 151/444 (34%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      ++ L T    +   G+  WLP G +   N+  ++ +   
Sbjct: 197 LTQYLHQLEEAKKRDHRKVGVEMELFT-FDEEVGAGLPIWLPKGARLRRNLENLLTQALI 255

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +  + +W  SG Y +YG+ M      ++      P +      ++++ +
Sbjct: 256 ERGYEPVRGPEILKSAVWKTSGHYANYGENM-YFTTIDEVEYGIKPMNCVGHIKVYQNSL 314

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP  FY+  +  R E      G++R REF   DA+ F    + +      +    
Sbjct: 315 HSYRELPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCRPSQIASE-VESIIDFT 373

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +I +  G         + P     S E                   +    +     + 
Sbjct: 374 QKIMNAFGFSYEM-EISTKPEKSIGSEE-----------------VWEEATQALKGALER 415

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D++    +     I++              + T
Sbjct: 416 CGIAYKIDEGGGAFYGPKIDI---KITDAIGRKWQCGTVQIDMNLP--------ERFALT 464

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +        +    +G+     A++     G+   +        I +       + 
Sbjct: 465 YTDENNSTQQPVMIHRAILGSFERFVAILTEHFGGEFPFFVAPTQVIIIPI------SEA 518

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  ++++  L KVG     ++  E +  +   A+    P+  ++G+K   +  V ++ 
Sbjct: 519 QYNYAKELHNALLKVGVYAEIENKNETLNKRIRNAEKQRVPMIAVLGAKEKEERLVAVRD 578

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    + +MS E  I     +   
Sbjct: 579 RRLKEQSNMSFESFITLTKEKMRE 602


>gi|182420015|ref|ZP_02951249.1| prolyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237666786|ref|ZP_04526771.1| proline--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376052|gb|EDT73639.1| prolyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237657985|gb|EEP55540.1| proline--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 570

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 120/237 (50%), Positives = 155/237 (65%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR GMI + + GIY+++PLG K L NV  I+REE
Sbjct: 1   MKMSNMLISTLREVPAEAEIDSHKLMLRAGMIRKMAAGIYNYMPLGLKVLKNVEDIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     +  A+LW ESGR+D+YG EM R+ DR  +    GPTHEEV TDI R+
Sbjct: 61  MNAAGAQEFLASAMIPAELWQESGRWDAYGAEMFRVKDRGARDFCLGPTHEEVFTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   +G    +NKM  +
Sbjct: 121 EIKSYKQLPLNLYQIQTKYRDERRPRFGVMRSREFIMKDAYSFDKDQDGLDIVFNKMHDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y++IF+R GL +  + A+SG IGG  S EF+V ++ GE  V    +  ++    E  
Sbjct: 181 YVKIFNRCGLDAKCVEADSGAIGGSNSAEFMVKSEVGEDDVVFCSEC-NYAANIEKA 236



 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 75/209 (35%), Positives = 105/209 (50%), Gaps = 4/209 (1%)

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSL 296
            ++       V           D  N    +  P         RG EVGHIF  GTKYS 
Sbjct: 359 ANETGYHVENVNYGRDFEGTVGDFRNVTEGEKCPCCGAPINIARGTEVGHIFKLGTKYSD 418

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            M+A F   DGK+    MG YGIG  R +A++IE  HD  GIIWP SVAP+ IS+I +  
Sbjct: 419 AMNANFIDEDGKEKPFVMGCYGIGVTRTMASIIEQHHDENGIIWPLSVAPYHISVIPVNV 478

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D+       ++Y +L  +G +V  DD  E+ G +F  ++L+G P++V VG K ++D +V
Sbjct: 479 KDEEQVKIATELYDQLFSMGVEVLLDDRNERAGVKFKDSELMGIPMRVTVGKK-ITDGEV 537

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E K R  G  E + + +V N     F  N
Sbjct: 538 EFKLRD-GDMEVIKISDVCNIVKGEFEKN 565


>gi|217076405|ref|YP_002334121.1| prolyl-tRNA synthetase [Thermosipho africanus TCF52B]
 gi|226701439|sp|B7IFB6|SYP_THEAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|217036258|gb|ACJ74780.1| prolyl-tRNA synthetase [Thermosipho africanus TCF52B]
          Length = 561

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 111/289 (38%), Positives = 169/289 (58%), Gaps = 6/289 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ + P L+E+P DAEI S  L+ R G I + + G+Y++LPL ++ L  +  I+REE
Sbjct: 1   MRFSRLYAPTLREDPSDAEIPSQALLQRAGFIRKIAAGVYTYLPLARRTLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +P +Q A+LW  SGR+D YG EM++L DR+++    GPTHEE++T++ R+
Sbjct: 61  MDKIGAQEILMPIIQPAELWQRSGRWDDYGPEMMKLKDRHNRDFTLGPTHEELVTELIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP + YQI  KFRDE+RPRFGV+R+REF+MKDAYSF  + E    +Y     +
Sbjct: 121 ELNSYKQLPVSLYQITTKFRDEIRPRFGVLRAREFIMKDAYSFHDSWESLDETYQLFKDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL+   + A +G IGG+ SHEF+  A+TGE+ V        +    E   + 
Sbjct: 181 YSKIMERIGLRYSVIEAATGAIGGNESHEFVAFANTGESNVLYCDCG--YAGSDERVPYK 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                +   E+            N +  + + E   V  R I    +F 
Sbjct: 239 GDYEKDDEAEKTL----EKVYTPNVRTVEQVAEFLNVPIRKIVKSLVFK 283



 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/189 (33%), Positives = 97/189 (51%), Gaps = 8/189 (4%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+   ++ D  P         +GIE+GHIF  GTKYS  M   +   DGK     MG
Sbjct: 378 EWTDLVVVQIGDPCPVCGKPLKGEKGIELGHIFKLGTKYSDSMDVKYMDKDGKMKSFIMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG G  R + A++E  HD  GIIWP SVAP+++ ++ +    +       K+Y+ L   
Sbjct: 438 CYGWGISRTLGAIVEQLHDDDGIIWPRSVAPYEVDIVVVGKEKEKEFSE--KLYSYLLDK 495

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD     G +F  ADL+GFP+++ VG K + + KVEIK R    +E + ++  +
Sbjct: 496 GVDVIIDDRNVSPGVKFKDADLIGFPIRITVGRK-LKEGKVEIKERG---KEAILVDANM 551

Query: 436 NYASHRFSN 444
               +  + 
Sbjct: 552 EQILNAINE 560


>gi|158299584|ref|XP_319682.4| AGAP008929-PA [Anopheles gambiae str. PEST]
 gi|157013587|gb|EAA14818.5| AGAP008929-PA [Anopheles gambiae str. PEST]
          Length = 761

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 148/434 (34%), Gaps = 42/434 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   IR E  + G  E+ 
Sbjct: 356 EEAAKRDHRKLGKEQELF--FFHELSPGSCFFQPKGAHIYNTLMGFIRSEYRKRGFQEVI 413

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW  SG +  Y + M       +      P +      +F    +S+R LP 
Sbjct: 414 SPNIYNAKLWQTSGHWQHYAENMFSFESEKET-FALKPMNCPGHCLMFDHRNRSWRELPL 472

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F +  +  +            ++   G
Sbjct: 473 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCMPDQIREE-ITGCLDFLRHVYTIFG 531

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P       E                   +    +     D         
Sbjct: 532 FTFNLV-LSTRPEKYLGEIE-----------------VWNEAEKALADSLDKFGEPWKEN 573

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L  N + +   ++    F    ++    +  +    G+ 
Sbjct: 574 PGDGAFYGPKIDI---TIMDALKRNHQCATIQLD----FQLPIRF----NLNYIDDSGEK 622

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +    +G++  + A++    +     WP  ++P ++ ++ +        D  +++
Sbjct: 623 KRPVIIHRAVLGSVERMIAILT---ENYAGKWPFWLSPRQVMVVPVGP---AYDDYADQV 676

Query: 369 YARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             RL + G  V  D D G+ +  +   A L  F   ++VG K  S   V ++ R   +  
Sbjct: 677 RQRLHEAGFMVEADLDAGDTMNKKIRNAQLAQFNFILVVGEKERSSETVNVRTRDNKVHG 736

Query: 428 DMSLEEVINYASHR 441
           ++++ +++   S  
Sbjct: 737 EVTVNDLVTKLSKL 750


>gi|239932385|ref|ZP_04689338.1| threonyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 653

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 138/439 (31%), Gaps = 36/439 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     H+L L + +  Q   G+  + P G      +    R      G   +  
Sbjct: 249 EAEKRDHRKLGHELDLFS-IPEQIGSGLAVFHPKGGIVRRVMEDYSRRRHEEEGYEFVYT 307

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+  SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 308 PHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 367

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R+R F   DA+ +    + S+   +K     L +    G
Sbjct: 368 RLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTREQMSEEL-DKTLTFVLNLLRDYG 426

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +                    +   + +  +    +     +         
Sbjct: 427 LTDFYLELST----------------KDPEKFVGTDEAWEEATETLRQVAEKQGLPLVPD 470

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++    F    ++ L  +A       K 
Sbjct: 471 PGGAAFYGPKI---SVQAKDAIGRTWQMSTIQLD----FNLPERFDLEYTAA---DGSKT 520

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +     G++    AV+    +     +P  +AP +   I I        +  EK  
Sbjct: 521 RPVMIHRALFGSIERFFAVLL---EHYAGAFPAWLAPVQAVGIPIG---DAHVEHLEKFA 574

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A   K G  V  D   +++  +   A     P  VI G + +++  V  ++R       +
Sbjct: 575 AAARKQGLRVEVDSSSDRMQKKIRNAQKQKVPFMVIAGDEDMANGAVSFRYRDGSQENGI 634

Query: 430 SLEEVINYASHRFSNNRPV 448
            ++E I            V
Sbjct: 635 PVDEAIAKIVKVVEERAQV 653


>gi|258652410|ref|YP_003201566.1| prolyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
 gi|258555635|gb|ACV78577.1| prolyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
          Length = 585

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 149/277 (53%), Gaps = 2/277 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SH+L++R G I + + GIY+WLPLG + L NV  I+REE 
Sbjct: 4   RLSTLFLRTLREDPADAEVPSHRLLVRAGYIRRAAPGIYTWLPLGYRVLRNVERIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  +GR+  YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 64  DAIGAQEVHFPALLPREPYEATGRWTEYGDNLFRLQDRKQGDYLLGPTHEEMFTLLVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY+ LP + YQIQ K+RDE RPR G++R REF+MKD+YSFDL   G   SY +   +Y
Sbjct: 124 YSSYKGLPLSLYQIQTKYRDEARPRAGILRGREFVMKDSYSFDLDDAGLAASYQRHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +RIF RLGL+ + + A SG +GG  S EF+     GE     S       + +  T    
Sbjct: 184 IRIFDRLGLRYVIVAAMSGAMGGSASEEFLADCVNGEDTYVRSPAGYAANVEAVTTPVPA 243

Query: 242 IISLNSIVEQ--WTAPYAATSDVHNEKLFDSLPENKR 276
            I L           P   T D        + P   R
Sbjct: 244 AIPLTDQPAAHVEDTPDTPTIDTLVAHSNAAHPRADR 280



 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/188 (36%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+       ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 399 GTVEAAEVREGDQSPDGSGPLTLARGIEMGHIFQLGRKYAQALGLQVLDENGKLVTVTMG 458

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R VAA+ ESS+D KG+IWP  VAP  +  + I        D  E I A L   
Sbjct: 459 SYGIGVSRAVAAIAESSYDDKGLIWPREVAPADVH-VVIAGKSAEIVDTAELIAAGLDAA 517

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  DD    +G +FA A+L+G P   +VG + V++  VE++ R +G + ++ L EV+
Sbjct: 518 GITVMLDDRNASVGVKFADAELIGVPTICVVG-RGVANGVVEVRDRASGDKTEVPLVEVV 576

Query: 436 NYASHRFS 443
                R  
Sbjct: 577 EQLRARVR 584


>gi|256752497|ref|ZP_05493354.1| prolyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748632|gb|EEU61679.1| prolyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 570

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 117/255 (45%), Positives = 163/255 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  I+REE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+NKM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDVDWEGLDKSFNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  +    +        +   F 
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISSIGEAVIAYCDNCGYAANEEKAECFI 240

Query: 241 DIISLNSIVEQWTAP 255
           +   +  ++ +    
Sbjct: 241 NQEIVEEMLPKEEVY 255



 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 101/190 (53%), Gaps = 3/190 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P         RGIEVGHIF  GTKYS  + A +   +G +  + MG
Sbjct: 381 VVADIKNVIEGDKCPRCGSPLKIDRGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIIMG 440

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R VAA+IE  HD KGIIWP SVAP+ + ++ +   ++      E IYA L K 
Sbjct: 441 CYGIGINRTVAAIIEQHHDEKGIIWPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKE 500

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD   + G +F  ADLLG P+++ VG K V D  VEIK R     E++ + +V+
Sbjct: 501 GIEVLIDDRDLRAGVKFNDADLLGIPIRITVGKK-VDDGIVEIKLRENEEAEEVKISDVV 559

Query: 436 NYASHRFSNN 445
               +     
Sbjct: 560 EKVKNIIKEK 569


>gi|313623934|gb|EFR94040.1| prolyl-tRNA synthetase [Listeria innocua FSL J1-023]
          Length = 568

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 120/271 (44%), Positives = 164/271 (60%), Gaps = 1/271 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  + AI+REE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQVASGIYSYLPLATLTLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA EM +P LQ A+LW ESGR+  YG E++RL DR  +  + GPTHEE++T + R 
Sbjct: 61  LEAIGAAEMLMPALQPAELWHESGRWADYGPELMRLKDRAARDFVLGPTHEELITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E    ++  M  +
Sbjct: 121 EIKSYKRLPITLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDETFELMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S    D+   +E     
Sbjct: 181 YSNIFSRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSD-ASDYAANTEMAPVL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +   +  +E+     A  +      + + L
Sbjct: 240 YMEKKSHELEKELEKVATENQKTIADIVEFL 270



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   +  D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 383 DLRMIQAGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G++W   ++PF + LI +    +      E +Y  L K G  
Sbjct: 443 IGLSRILSAIAEQSNDENGLVWDKQISPFDLHLIPVNMKSEEQVAFAESLYDSLQKAGFS 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N  
Sbjct: 503 VLIDDRTERAGVKFADADLIGLPIRITVGKK-AAEGIVEVKIRKTGEMIEVRQDELLNTL 561


>gi|218438508|ref|YP_002376837.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 7424]
 gi|226699136|sp|B7K9K1|SYP_CYAP7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218171236|gb|ACK69969.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 7424]
          Length = 600

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 128/276 (46%), Positives = 165/276 (59%), Gaps = 7/276 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+R+E
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ ++LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNATGAQECLLPQLQPSELWKESGRWDTYTKAEGIMFALEDRQERELGLGPTHEEVITFI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD  PEG K +Y  M
Sbjct: 121 AREMIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDTDPEGLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  I  R GL    + A+SG IGG  S EF+VLAD GE +V  + D   +    E  
Sbjct: 181 DKAYRNILRRCGLAFRAVDADSGAIGGSGSQEFMVLADAGEDEVLYTDDG-KYAANVEKA 239

Query: 238 ---DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                D+  S     E+   P   T +   + L  S
Sbjct: 240 VSLPPDEEPSPFKNYEKRETPNTDTIEKLAQFLKCS 275



 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/165 (35%), Positives = 96/165 (58%), Gaps = 1/165 (0%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             SARGIEVGHIF  GTKYS  M AT+    G++  + MG YGIG  R+  + +E S+D 
Sbjct: 431 LQSARGIEVGHIFQLGTKYSHAMGATYTNEQGEEMPLVMGCYGIGVSRLAQSAVEQSYDK 490

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GIIWP ++AP+   ++    +D    +  EK+Y  L+  G +   DD  E+ G +F  +
Sbjct: 491 DGIIWPVAIAPYHAIVVIPNINDPQQVEVAEKLYTELNAAGIETLLDDRDERAGVKFKDS 550

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +L+G P +++ G + + + K+E+  R T   +D+ ++EV++    
Sbjct: 551 ELVGIPYRIVTG-RSLKEGKLEVVERATKKSQDIPIDEVVSTIQQ 594


>gi|311739686|ref|ZP_07713521.1| proline--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305502|gb|EFQ81570.1| proline--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 589

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 115/387 (29%), Positives = 170/387 (43%), Gaps = 22/387 (5%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G + + + G+Y+WLPLG + L  +  ++R+E 
Sbjct: 4   RLSELFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGVYTWLPLGLRTLRKIEDVVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM  P L   + + ++ R+  YG  + RL DR +  M+ GPTHEE+     +  
Sbjct: 64  DAIGGQEMLFPALLPREPYEKTNRWVEYGDNLFRLKDRKNADMLLGPTHEEMFASAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF MKD+YSFD+T EG   SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFTMKDSYSFDMTDEGLDESYGRHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             IF+RL +     +A SG +GG  S EF+ +++ GE   F      D+    E      
Sbjct: 184 QNIFNRLEIDYAICKATSGAMGGSASEEFLAVSEVGE-DTFVRSTEGDYAANVEAVVTPA 242

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
               +        P A   D    +  + L E  + +   ++                AT
Sbjct: 243 PAEKDI----EGQPEAQEHDTPGAETIEKLVEWAQGAGITVDG-------------REAT 285

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVA-AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                                R    A +    D +        A   +        D  
Sbjct: 286 AADTLKCMMVKLFHPAVESEERESELAAVLIPGDRELDEKRLEAALEPVEFELAGDKDFA 345

Query: 361 CRDACEKIY---ARLSKVGCDVFWDDM 384
             D   K Y     L+  G  V  D  
Sbjct: 346 DNDFLVKGYVGPRALNANGIKVLADPR 372



 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 6/189 (3%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +    K  D  PEN       RGIE+GHIF  G KY+          +GK     MG
Sbjct: 403 EFIEAAEVKEGDLAPENHGTLTLERGIELGHIFQLGRKYTEAFDVQILDENGKRAVPTMG 462

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R++A + E  HD KG+ WP +VAP+++ +      D    +A +K+   LS  
Sbjct: 463 SYGIGITRMLAVLAEQRHDDKGLNWPVAVAPYQVHVAVAN-KDAAAMEAGDKLVEELSAK 521

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD      G +F  A+LLG P   I+G +   + K+E++ R  G   ++  E++
Sbjct: 522 GLEVLFDDRPKVSPGVKFKDAELLGMPFVAILG-RAFKEGKIELRIRG-GETLEVPAEDI 579

Query: 435 INYASHRFS 443
           ++       
Sbjct: 580 VDKILELVR 588


>gi|153870648|ref|ZP_02000004.1| threonyl-tRNA synthetase, class IIa [Beggiatoa sp. PS]
 gi|152072888|gb|EDN69998.1| threonyl-tRNA synthetase, class IIa [Beggiatoa sp. PS]
          Length = 390

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 78/426 (18%), Positives = 148/426 (34%), Gaps = 40/426 (9%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
             +L L    + + + G+  W   G +    +   IR    +    E+  P L    LW 
Sbjct: 2   GKQLDLF--HVQEEAPGMVFWHDKGWQIYIIIQNYIRHLLRQHHYQEVHTPQLVDRSLWE 59

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           +SG +D +G +M  +    ++     P +      IF   +KSYR+LP    +     R+
Sbjct: 60  KSGHWDKFGDDMF-VTQSENREYAVKPMNCPCHIQIFNQGLKSYRDLPLRLAEFGSCHRN 118

Query: 142 ELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           E      G+MR R F+  DA+ F    +  +   +       +++   G K+I ++  + 
Sbjct: 119 EASGTLHGLMRIRGFVQDDAHIFCTDDQIQQE-VSDFIDLLFKVYTDFGFKNILIKLSTR 177

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           P     S E                   D    +     ++      +     A Y    
Sbjct: 178 PEKRVGSDE-----------------VWDKAEKALELALNNKKLAWDLQPGEGAFYGPKI 220

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGI 319
           +     L D L    +     ++       G        AT+  ADG     V +    +
Sbjct: 221 EF---VLKDCLDRVWQCGTIQVDFSMPDRLG--------ATYIAADGSKQVPVMLHRAIL 269

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G++     V+   + G   +W   V    +++           D  ++I  +L K G  V
Sbjct: 270 GSLERFIGVLIEEYAGALPLWLAPVQVVILNIT------DEHADYAKQIEVKLLKEGFRV 323

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             D   E+IG +     L   P  +I+G + +   +V ++ R    +  M ++  I    
Sbjct: 324 ESDLRNEKIGFKIREHTLQKIPYLLIIGGREIETQQVTVRLRNGEDKGAMLIDTFIEQLR 383

Query: 440 HRFSNN 445
              ++ 
Sbjct: 384 SEIASY 389


>gi|71033673|ref|XP_766478.1| threonyl-tRNA synthetase [Theileria parva strain Muguga]
 gi|68353435|gb|EAN34195.1| threonyl-tRNA synthetase,  putative [Theileria parva]
          Length = 779

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 153/441 (34%), Gaps = 35/441 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +   ++E   RD       L L         S G   WLP G K  + +   +R+   
Sbjct: 365 KMYKHRIEEAKQRDHRTIGTDLKLF--YFDTVHSPGSCFWLPNGAKIYNRLVEFMRDNYR 422

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P + S DLW +SG YD+Y + M  L +  D      P +      +F+   
Sbjct: 423 IRGYQEVITPNIFSCDLWKQSGHYDNYKENM-YLFNLEDTEWGMKPMNCPGHCLMFKHLF 481

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY+ LP       +  R+EL     G+ R R F   DA+ F    +  +          
Sbjct: 482 LSYKQLPLRLADFGVLHRNELTGSLSGLTRVRRFQQDDAHIFCTREQIMEE--------V 533

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L I   +G               D  +EF     T   +     +  +    S     + 
Sbjct: 534 LNILTFIGKVYSLF---------DFRYEF--KLSTKPAKALGDNELWEVAEKSLEEALNK 582

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             +   +     A Y    DV    LFD L    +     ++      F  +Y     ++
Sbjct: 583 TGAKWILNPGDGAFYGPKIDV---VLFDCLDREHQCGTIQLDFNLPIRFNLEYRDKSESS 639

Query: 302 FKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            +    G +  V +     G++    A++    +      P  ++P ++  I I      
Sbjct: 640 AENVRCGFNRPVIIHRAIFGSIERFVAIVL---EQTKGKLPFWLSPNQLLFIPITDSH-- 694

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++Y + + +G +V  D     I  +        +    IVG + V    V ++ 
Sbjct: 695 -LDYALELYEKFNALGYNVDVDRSNNTINKKIKFGQQQRWNYMGIVGDREVETRTVSLRP 753

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R +  +  +SL+E++     +
Sbjct: 754 RDSDEQNVVSLDELVKLFESQ 774


>gi|332664427|ref|YP_004447215.1| threonyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333241|gb|AEE50342.1| threonyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
          Length = 645

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 153/443 (34%), Gaps = 39/443 (8%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L      +   G+  WLP G    D +   +R EQ + G 
Sbjct: 233 LVMLEEARKRDHRKLGQELELFM-FSERVGAGLPIWLPKGNALRDRLMNFLRVEQEKRGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             ++ P +   +L+V SG Y  YGK+  +     ++ +  +  P +     +I+     S
Sbjct: 292 KLVTTPHIGRKELYVTSGHYAKYGKDSFQPIHTPKDGEEFLLKPMNCPHHCEIYAHRPHS 351

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +    +R E      G+ R R F   DA+ F    +     +  +      
Sbjct: 352 YRDLPMRIAEFGTVYRYEQTGELHGLSRVRGFTQDDAHIFCTEEQVKGE-FLNVLDLTRT 410

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           + +++G K    +                       +   S +       +      ++ 
Sbjct: 411 VLYKMGFKEFTAQISLRDPNT-------------PEKYLGSDENWRNAENAIIEATREVG 457

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              ++     A Y    D     + D++    ++    ++                  + 
Sbjct: 458 LKTTMELGEAAFYGPKLDFM---VRDAIGRQWQLGTIQVDYNLP--------ERFELEYV 506

Query: 304 GADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           GAD K H   M          R ++ +IE++     +                    +  
Sbjct: 507 GADNKTHRPVMIHRAPFGSMERFISILIENTAGKFPLWLMPEQYALLPI-------SEKF 559

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C++I  +L+      + DD  E IG +    +L   P  +IVG K +  + V ++ +
Sbjct: 560 VDYCKEIEEKLATHDIRGYVDDRNETIGRKIRDTELKRIPYMLIVGEKEMEATGVAVRRQ 619

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
             G +  MSLE  ++      + 
Sbjct: 620 GEGDKGSMSLEAFVSLFGEALAK 642


>gi|323359943|ref|YP_004226339.1| threonyl-tRNA synthetase [Microbacterium testaceum StLB037]
 gi|323276314|dbj|BAJ76459.1| threonyl-tRNA synthetase [Microbacterium testaceum StLB037]
          Length = 666

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 68/456 (14%), Positives = 134/456 (29%), Gaps = 48/456 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +   L+E   RD      +L L +    +   G+  + P G      +   +RE    
Sbjct: 234 RAYQHRLEEAAKRDHRKLGKELDLFS-FPDEIGPGLSVFHPKGGIIRYEIERYMRERLLA 292

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHE 111
           +G   ++ P +   DL++ SG    Y   M                 R  +     P + 
Sbjct: 293 SGYEVVNTPHITKGDLFMTSGHLQWYADGMYPPMVLDEVVDADGHVSREGQEYYLKPMNC 352

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
                IFRS  +SYR LP    +    +R E      G+ R R     D + +    +  
Sbjct: 353 PFHNLIFRSRGRSYRELPLRLSEFGSVYRYEKSGTLSGLTRVRGMTQDDTHIYVTADQVK 412

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                      L+     GL    +   +               + G  +          
Sbjct: 413 GEL-THSLDFVLQTLRDYGLNDFYLELSTK--------------EEGNPKFIGDDSLWVE 457

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +     +             A Y       + +  D++    ++S   ++       
Sbjct: 458 ATETLREVAEASGLELVPDPGGAAFYGPKI---SVQARDAIGRTWQMSTIQLDFNQP--- 511

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
                      + G DG+ H    +     G++    A++   + G   +W   V    +
Sbjct: 512 -----ERFELEYTGPDGEKHRPVMIHRALFGSVERFFAILLEHYAGAFPVWLSPVQVVAV 566

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +           D  + I A L   G     D   +++  +         PL +I G +
Sbjct: 567 PVAA------EYGDYLQGIVADLKSKGVRAEADHSDDRMQKKIRTHTTQKVPLMLIAGEQ 620

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             S+  V  + R       + ++E +   +   S+ 
Sbjct: 621 DRSNGTVSFRFRDGTQLNGIPVDEAVARITGAISSR 656


>gi|307700804|ref|ZP_07637829.1| threonine--tRNA ligase [Mobiluncus mulieris FB024-16]
 gi|307613799|gb|EFN93043.1| threonine--tRNA ligase [Mobiluncus mulieris FB024-16]
          Length = 669

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 65/456 (14%), Positives = 138/456 (30%), Gaps = 48/456 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  L+E   RD      +L L +    +   G+  + P G      +    R+    
Sbjct: 246 KAYVTRLEEAEKRDHRRLGTELDLFS-FPEEIGSGLPVFHPKGALVRMEMENYSRQRHLE 304

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
            G   +S P +    L+  SG    Y + M                 +        P + 
Sbjct: 305 EGYSFVSTPHVTKGQLFETSGHLSWYKEGMFPAMHLDEERDAQGNVTKEGADYYLKPMNC 364

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R+R F   D++ +    +  
Sbjct: 365 PMHNLIFKSRTRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDSHIYCTRDQMK 424

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 425 DELTK-LLTFVLDLLKDYGLDDFYLELST----------------KNPQKFVGSDEVWEE 467

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +     +          +  A Y       + +  D++    ++S   ++    F  
Sbjct: 468 ATRTLQEVAEASGLELRPDPEGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FNL 520

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++ L  +A       +   V +     G++     V+   + G    W          
Sbjct: 521 PERFELEYTAA---DGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW------LAPV 571

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            + +          CE +  +L      V  D+  ++ G +   A     P  +IVG + 
Sbjct: 572 QVRLVPVADTFNAYCEDVAKQLRAENVRVEIDESDDRFGKKIRNAAKDKIPFTLIVGGED 631

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
                V  ++R    +  + +   I   +    + +
Sbjct: 632 AEHGAVSFRYRGGEQKNGVKISAAIQEITETIRSRK 667


>gi|302379784|ref|ZP_07268268.1| proline--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302312372|gb|EFK94369.1| proline--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
          Length = 576

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 115/240 (47%), Positives = 161/240 (67%), Gaps = 1/240 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K+++P L+E+P+DAEIASHKL+LR GMI + + G+YS+LPLG + +  V  I+REE
Sbjct: 1   MRMNKFYMPTLREDPQDAEIASHKLLLRAGMIRKTAAGLYSYLPLGYRIVRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E+ +P  Q  ++W ESGR+ ++G EM +L DRN++    GPT EE  TD+ + 
Sbjct: 61  MDNYGSQEIHMPITQPREIWEESGRWKTFGPEMFKLKDRNNREFCLGPTAEEYFTDLVKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFG+ RSREFLM+DAY+FD+  E    +Y  M+ +
Sbjct: 121 EIKSYKQLPLNIYQIQTKYRDEKRPRFGINRSREFLMQDAYTFDVDEEAMGEAYMNMWRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F+RLGL+   +  +SG +GG+ SHEFI L+D GE  V C  D  DF    E     
Sbjct: 181 YEVVFNRLGLEYKIVAGDSGAMGGNSSHEFIALSDVGEG-VICYSDDSDFAATDEKAYVY 239



 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/199 (34%), Positives = 102/199 (51%), Gaps = 1/199 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +  + +         +  E   D   ++     RGIEVG+IF  G KYS  M+ATF   +
Sbjct: 370 NYGDDFEGEIVEDLLMVQEGDIDPETKSPLKFKRGIEVGNIFQLGQKYSKSMNATFLDEN 429

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK+ +  MGSYGIG  R V+A++E +HD KG+IWP  VAP+ + +  +   D+      E
Sbjct: 430 GKEQFFWMGSYGIGVTRSVSAIVEQNHDDKGMIWPLVVAPYHVIITIVNTKDEEQNTLAE 489

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+Y +L   G +V  DD  E+ G +F   DL+G PL++ VG K   +  VE   R T   
Sbjct: 490 KLYEKLLLQGVEVLLDDRKERAGVKFNDRDLIGIPLRITVGKKAAEE-IVEFSERRTLEN 548

Query: 427 EDMSLEEVINYASHRFSNN 445
            +MS  E  +      + N
Sbjct: 549 VEMSSTEAYDKVMEIINAN 567


>gi|81301415|ref|YP_401623.1| threonyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
 gi|123769177|sp|Q31JY3|SYT_SYNE7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81170296|gb|ABB58636.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Synechococcus
           elongatus PCC 7942]
          Length = 604

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/455 (16%), Positives = 145/455 (31%), Gaps = 41/455 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y     +   RD      +L L          G+  W P G      +   +++EQ 
Sbjct: 183 LTEYKRRKEEALKRDHRKLGRELGLFL-FADPVGPGLPLWTPKGTILRSTLEDFLKQEQM 241

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTD 116
           + G   +  P L   DL+  SG + +Y ++M  +   +D+A       +  P +      
Sbjct: 242 KRGYQSVVTPHLARVDLFKVSGHWQNYREDMFPMMAEDDEARGLEQGFVLKPMNCPFHIQ 301

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I+++ ++SYR LP    +    +R E     G +        D     + P+     +  
Sbjct: 302 IYKNELRSYRELPIRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVRPDQLASEFLS 361

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +F  L LK    R                  D    +   S D  +    +  
Sbjct: 362 VVDLILSVFKALNLKKFKARLS--------------FRDPESDKYIGSDDVWEKAESAIQ 407

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              + +     I     A Y    D       D+L    ++    ++             
Sbjct: 408 AAAETLGMDYFIGVGEAAFYGPKLDFI---FQDALDREWQLGTVQVDYNLP--------E 456

Query: 297 PMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                +   DG      M          R++  +IE       +                
Sbjct: 457 RFDLEYVAEDGSRQRPVMIHRAPFGSLERLIGILIEEYAGDFPLWLAPEQIRLLPVT--- 513

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D C+++  +L  +G  V  D  G+++G     A+    P+  ++G++     
Sbjct: 514 ----ETVLDYCQQVADQLRAIGVRVQVDCSGDRLGKLIRNAEKAKIPVMAVIGAQEAESE 569

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            + I+ R TG    +++ ++    S   +   P L
Sbjct: 570 TLSIRTRATGDLGSLTVADLTKRLSSAIAEKLPHL 604


>gi|148269548|ref|YP_001244008.1| prolyl-tRNA synthetase [Thermotoga petrophila RKU-1]
 gi|166980169|sp|A5IJQ9|SYP_THEP1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|147735092|gb|ABQ46432.1| prolyl-tRNA synthetase [Thermotoga petrophila RKU-1]
          Length = 577

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 110/251 (43%), Positives = 163/251 (64%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    + P L+E P D E  SH+ +LR G I + + GIY++LPLG++ L  +  I+REE
Sbjct: 1   MRMKDLYAPTLKETPSDVETVSHEYLLRGGFIRKVAAGIYTYLPLGRRVLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P LQ A+LW +SGR+D YG EM++L DR+++    GPTHEE++TD+ ++
Sbjct: 61  MNRIGAQEILMPILQPAELWKQSGRWDDYGPEMMKLKDRHERDFTLGPTHEEIVTDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP T YQI  K+RDE+RPRFG++R+REF+MKDAYSF  + E    +Y +   +
Sbjct: 121 ELRSYKQLPLTLYQIANKYRDEIRPRFGLLRAREFIMKDAYSFHASWESLDETYEEFKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RI  RLG++ + + AE+G IGG+ SHEF+V A  GET V   +    +    E  ++ 
Sbjct: 181 YSRIMERLGVRYMIIEAETGAIGGNASHEFVVPAKIGETNVLFCEKC-GYQASDEKAEYR 239

Query: 241 DIISLNSIVEQ 251
              +     E+
Sbjct: 240 GEYTQEQEKEK 250



 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 64/196 (32%), Positives = 98/196 (50%), Gaps = 7/196 (3%)

Query: 258 ATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+      D  P       + +GIE+GHIF  GTKYS  M A F   +G+     MG
Sbjct: 378 EWYDLRTMVEGDPCPVCGEPLKATKGIELGHIFKLGTKYSEAMKAYFMDENGEMKPFIMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG G  R +AAV+E  HD  G+IWP S+AP+ + +  +  +D   +   EKIY  LS+ 
Sbjct: 438 CYGWGVSRTMAAVVEHFHDENGMIWPLSIAPYTVVVDILNMNDAEQKQVGEKIYQVLSEK 497

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-- 433
           G +V  DD     G +F  ADL+GFP+++ VG + + +  VE+K R +     ++++   
Sbjct: 498 GEEVVLDDREVSPGFKFKDADLIGFPIRINVG-RSLKEGVVELKKRYSKELVKVNIKNGF 556

Query: 434 --VINYASHRFSNNRP 447
             ++           P
Sbjct: 557 GTLLETLEKMKREYDP 572


>gi|167039496|ref|YP_001662481.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|300915254|ref|ZP_07132569.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307725178|ref|YP_003904929.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|226701350|sp|B0K5F2|SYP_THEPX RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166853736|gb|ABY92145.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|300888978|gb|EFK84125.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307582239|gb|ADN55638.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X513]
          Length = 570

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 116/255 (45%), Positives = 162/255 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  I+REE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+NKM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDVDWEGLDKSFNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  +    +        +     
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISSIGEAVIAYCDNCGYAANEEKAECLI 240

Query: 241 DIISLNSIVEQWTAP 255
           +   +  ++ +    
Sbjct: 241 NQEIVEEMLPKEEVY 255



 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 101/190 (53%), Gaps = 3/190 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P         RGIEVGHIF  GTKYS  + A +   +G +  + MG
Sbjct: 381 VVADIKNVIEGDKCPRCGSPLKIDRGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIIMG 440

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R VAA+IE  HD KGIIWP SVAP+ + ++ +   ++      E IYA L K 
Sbjct: 441 CYGIGINRTVAAIIEQHHDEKGIIWPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKE 500

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD   + G +F  ADLLG P+++ VG K V D  VEIK R     E++ + +V+
Sbjct: 501 GIEVLIDDRDLRAGVKFNDADLLGIPIRITVGKK-VDDGIVEIKLRENEEAEEVKISDVV 559

Query: 436 NYASHRFSNN 445
               +     
Sbjct: 560 EKVKNIIKEK 569


>gi|313896347|ref|ZP_07829900.1| proline--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975146|gb|EFR40608.1| proline--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 570

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 119/285 (41%), Positives = 170/285 (59%), Gaps = 2/285 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +  + P L+  P +AEIASH+LM R G+I + + G+Y++LPL  + L  +  IIREE
Sbjct: 1   MRATNLYAPTLRNTPAEAEIASHRLMYRAGLIRKSAGGMYTYLPLAWRTLRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P LQ A+LW ESGR+ +YG EM+R+ DR+++A   GPTHEE++T + R 
Sbjct: 61  MDAAGGQEIMMPILQPAELWEESGRWGAYGAEMMRIQDRHERAFCLGPTHEEMITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFGVMRSREF+M+D YSFD   EG   SY KM+ +
Sbjct: 121 ELRSYKQLPVMLYQIQDKFRDERRPRFGVMRSREFIMQDLYSFDKDVEGMHESYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP--IPSENTD 238
           Y  +F R GL    + A+ G IGG  S EF VLA  GE+++ C            ++   
Sbjct: 181 YTNVFTRCGLNFRAVEADCGAIGGGRSEEFTVLAPEGESRIACCDACSYAASDEKAQLRP 240

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
            D        +E+ + P+ +T  +  E L   + +  +  A   E
Sbjct: 241 LDAPDEAELPLEKVSTPHTSTIALLAEFLKIPVEKTIKAVAYQTE 285



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 107/218 (49%)

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
             M   +   N       ++N + +      A    V    L  +  E     +RGIE G
Sbjct: 351 MRMKNAVSGANEQDYHYTNVNPVRDFAHVTVADIRLVAEGDLCPACGEGHLHISRGIEAG 410

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            IF  GTKYS  M A F   DGK   +QMG YGIG  R +AA IE +HD  GIIWP ++A
Sbjct: 411 QIFALGTKYSEAMQANFLDVDGKLKPLQMGCYGIGVGRTMAAAIEQNHDEHGIIWPRAIA 470

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P+++ ++ + A  +      E+IY  L   G DV  DD  E+ G +F   DL+G+P+++ 
Sbjct: 471 PYEVVVVAVNAKVEEQLAYAEEIYEELRAAGIDVLLDDRRERAGVKFNDCDLIGYPVRIA 530

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G K + +  +E+K R TG   + + +  +       +
Sbjct: 531 IGPKTIENGSIEVKLRRTGELVNFARDTYLKGVRDMLA 568


>gi|297587908|ref|ZP_06946552.1| proline--tRNA ligase [Finegoldia magna ATCC 53516]
 gi|297574597|gb|EFH93317.1| proline--tRNA ligase [Finegoldia magna ATCC 53516]
          Length = 576

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 114/240 (47%), Positives = 162/240 (67%), Gaps = 1/240 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K+++P L+E+P+DAEIASHKL+LR GMI + + G+YS+LPLG + +  V  I+REE
Sbjct: 1   MRMNKFYMPTLREDPQDAEIASHKLLLRAGMIRKTAAGLYSYLPLGYRIVRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E+ +P  Q  ++W ESGR+ ++G EM +L DRN++    GPT EE  TD+ + 
Sbjct: 61  MDNYGSQEIHMPVTQPREIWEESGRWKTFGPEMFKLQDRNNREFCLGPTAEEYFTDLVKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFG+ RSREFLM+D+Y+FD+  E  + +Y  M+ +
Sbjct: 121 EIKSYKQLPLNIYQIQTKYRDEKRPRFGINRSREFLMEDSYTFDVDEEAMREAYMNMWRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F+RLGL+   +  +SG +GG+ SHEFI L+D GE  V C  D  DF    E     
Sbjct: 181 YEVVFNRLGLEYKIVAGDSGAMGGNSSHEFIALSDVGEG-VICYSDDSDFAATDEKAYVY 239



 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 68/199 (34%), Positives = 102/199 (51%), Gaps = 1/199 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +  + +         +  E   D   ++     RGIEVG+IF  G KYS  M+ATF   +
Sbjct: 370 NYGDDFEGEIVEDLLMVQEGDIDPETKSPLKFKRGIEVGNIFQLGQKYSKSMNATFLDEN 429

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK+ +  MGSYGIG  R V+A++E +HD KG+IWP  VAP+ + +  +   +       E
Sbjct: 430 GKEQFFWMGSYGIGVTRSVSAIVEQNHDDKGMIWPLVVAPYHVIITIVNTKNDEQNTLAE 489

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+Y +L   G +V  DD  E++G +F   DL+G PL++ VG K   +  VE   R T   
Sbjct: 490 KLYEKLLLQGVEVLLDDRKERVGVKFNDRDLIGIPLRITVGKK-ADEDIVEFSERKTLEN 548

Query: 427 EDMSLEEVINYASHRFSNN 445
            +MS +E         + N
Sbjct: 549 VEMSSQEAYEKVMEIINAN 567


>gi|169344114|ref|ZP_02865097.1| prolyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
 gi|169297725|gb|EDS79824.1| prolyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
          Length = 570

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 130/293 (44%), Positives = 170/293 (58%), Gaps = 6/293 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR G++ + + GIY+++PLG K ++NV  I+REE
Sbjct: 1   MKMSNMLVGTLREVPAEAEIESHKLMLRAGLMRKMAAGIYNYMPLGLKVIENVKNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E   P L  A+LW ESGR+D+YG EM RL DR+++    GPTHEEV TDI R+
Sbjct: 61  MNNAGAQEFLAPALIPAELWQESGRWDAYGAEMFRLKDRHNRDFCLGPTHEEVFTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKD YSFD   EG   +Y KM  +
Sbjct: 121 EIKSYKQLPLNLYQIQTKYRDERRPRFGVMRSREFIMKDGYSFDKDQEGLDLAYEKMRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+ IF+R GL +  + A+SG IGG  S EF+V ++ GE  V       D+    E     
Sbjct: 181 YVNIFNRCGLDAKTVAADSGAIGGSGSAEFMVKSEVGEDDVVFCTAC-DYAANIEKAP-- 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
              S     E+         +    K  + L +    S + I    IF    K
Sbjct: 238 ---STPEHGEKEELMEVEKVETPVVKSIEDLAKFFECSPKKIAKTLIFQADDK 287



 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 103/191 (53%), Gaps = 3/191 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 D  N  + +  PE  +    +RG EVGHIF  GTKYS  M ATF   DGK    
Sbjct: 375 FEGIVGDFRNVTIGEKCPECGKEITISRGTEVGHIFKLGTKYSESMGATFIDEDGKAKPF 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R VA++IE  +D  GIIWP  VAP+ +S+I     ++      E+IY  L
Sbjct: 435 IMGCYGIGVTRTVASIIEQHNDENGIIWPLEVAPYHVSVIPANVKNEEQATKAEEIYNEL 494

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K+G +   DD  E+ G +F  ++L+G P+++ VG K + + +VE K R  G  E +S+E
Sbjct: 495 RKMGVEALLDDRKERAGVKFKDSELMGIPMRITVG-KMIGEGQVEFKLRNGGEVETLSIE 553

Query: 433 EVINYASHRFS 443
           EV N     F 
Sbjct: 554 EVYNRVREEFE 564


>gi|56751513|ref|YP_172214.1| threonyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|73919835|sp|Q5N1X6|SYT_SYNP6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56686472|dbj|BAD79694.1| threonyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
          Length = 607

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/455 (16%), Positives = 145/455 (31%), Gaps = 41/455 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y     +   RD      +L L          G+  W P G      +   +++EQ 
Sbjct: 186 LTEYKRRKEEALKRDHRKLGRELGLFL-FADPVGPGLPLWTPKGTILRSTLEDFLKQEQM 244

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTD 116
           + G   +  P L   DL+  SG + +Y ++M  +   +D+A       +  P +      
Sbjct: 245 KRGYQSVVTPHLARVDLFKVSGHWQNYREDMFPMMAEDDEARGLEQGFVLKPMNCPFHIQ 304

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I+++ ++SYR LP    +    +R E     G +        D     + P+     +  
Sbjct: 305 IYKNELRSYRELPIRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVRPDQLASEFLS 364

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +F  L LK    R                  D    +   S D  +    +  
Sbjct: 365 VVDLILSVFKALNLKKFKARLS--------------FRDPESDKYIGSDDVWEKAESAIQ 410

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              + +     I     A Y    D       D+L    ++    ++             
Sbjct: 411 AAAETLGMDYFIGVGEAAFYGPKLDFI---FQDALDREWQLGTVQVDYNLP--------E 459

Query: 297 PMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                +   DG      M          R++  +IE       +                
Sbjct: 460 RFDLEYVAEDGSRQRPVMIHRAPFGSLERLIGILIEEYAGDFPLWLAPEQIRLLPVT--- 516

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D C+++  +L  +G  V  D  G+++G     A+    P+  ++G++     
Sbjct: 517 ----ETVLDYCQQVADQLRAIGVRVQVDCSGDRLGKLIRNAEKAKIPVMAVIGAQEAESE 572

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            + I+ R TG    +++ ++    S   +   P L
Sbjct: 573 TLSIRTRATGDLGSLTVADLTKRLSSAIAEKLPHL 607


>gi|313609001|gb|EFR84741.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL F2-208]
          Length = 344

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 120/271 (44%), Positives = 162/271 (59%), Gaps = 1/271 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   + A+SG IGG+ S EF+ L++ GE  +  S    D+   +E     
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSEIGEDTIAYSD-ASDYAANTEMAPVL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +   +  +E+     A         + + L
Sbjct: 240 YMEKKSHELEKELKKVATPDQKSIADIVEFL 270


>gi|294508832|ref|YP_003572891.1| threonyl-tRNA synthetase, class IIa [Salinibacter ruber M8]
 gi|294345161|emb|CBH25939.1| threonyl-tRNA synthetase, class IIa [Salinibacter ruber M8]
          Length = 656

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 142/441 (32%), Gaps = 41/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +     +   RD      +L L T    Q   G+  WLP G      +  ++++EQ + G
Sbjct: 238 FLERRRKAKERDHRKLGTELNLFTFDTEQVGPGLPMWLPKGTTLRQTLQEVLQQEQVKQG 297

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRNDKAMIYGPTHEEVMTDIFR 119
              +  P +   DL+  SG Y  Y  +           D  +   +  P +      I++
Sbjct: 298 YKPVCTPHIGRLDLYRTSGHYPHYEDDQFPPMVTGEGDDGEEDGYLLKPMNCPHHVKIYQ 357

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +   SYR+LP    +    +R E      G+ R R F   DA+ F  TP   K  +  + 
Sbjct: 358 NDHHSYRDLPVRLAEFGTVYRQEQTGELGGLTRVRGFTQDDAHIFC-TPAQVKDEFKSVI 416

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENT 237
              L++   LG +    +                  D  +T+ +                
Sbjct: 417 DLTLKVLDALGFEEFEAQISLR--------------DPDDTEKYTGRDALWTRAEQDIRE 462

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              +            A Y    D   E   D+L    ++    ++              
Sbjct: 463 AVAETDLDAYEEPGEAAFYGPKLDFMVE---DALGRAWQLGTIQVDYNLP--------ER 511

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              T+     +      +     G++     V+     G    W   +AP ++ +I +  
Sbjct: 512 FELTYVDEHDERKRPVMIHRAPFGSLERFIGVLIEHCGGNFPTW---LAPTQVQIIPVG- 567

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +++ A L      V  D   E +G +   A+    P  ++VG        V
Sbjct: 568 --DDFVDYAQEVAATLRAEDVRVEIDTSDETVGYKIREAETQKVPYMLVVGGDEEEAGTV 625

Query: 417 EIKHRLTGIREDMSLEEVINY 437
            ++    G +  +S+++ ++ 
Sbjct: 626 SVRSHADGPQGTVSVQDFLDR 646


>gi|325912604|ref|ZP_08174987.1| threonine--tRNA ligase [Lactobacillus iners UPII 60-B]
 gi|325478025|gb|EGC81154.1| threonine--tRNA ligase [Lactobacillus iners UPII 60-B]
          Length = 643

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 154/434 (35%), Gaps = 36/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      +   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y ++M    D  D  M    P +      I+  HI+SYR LP    
Sbjct: 296 MNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++    +  
Sbjct: 356 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVELDQVQSE-FAKILKLIMEVYRDFDITD 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 415 YYFRLS-------------YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEAEGE 461

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++    + ++ G DG++H  
Sbjct: 462 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----NLSYVGKDGEEHRP 510

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G M    A +   + G    W        + +  I  ++    +  + +  +
Sbjct: 511 VMVHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PLQVKIIPVNNDAHGEYAQNVKDQ 565

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K+G     D   E++G +   A     P  +++G   +  + V ++   +  +E  +L
Sbjct: 566 LMKLGFRSEVDFRNEKLGYKIREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESKAL 625

Query: 432 EEVINYASHRFSNN 445
            E ++  S   ++ 
Sbjct: 626 SEFVSELSADVASY 639


>gi|323489584|ref|ZP_08094811.1| prolyl-tRNA synthetase 1 [Planococcus donghaensis MPA1U2]
 gi|323396715|gb|EGA89534.1| prolyl-tRNA synthetase 1 [Planococcus donghaensis MPA1U2]
          Length = 567

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 126/362 (34%), Positives = 184/362 (50%), Gaps = 3/362 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+++  F+P L+E P DAE+ SH+L+LR G I Q++ GIYS+LPLG++ L  V  +IREE
Sbjct: 1   MKQTATFIPTLRETPADAEVRSHQLLLRAGFIRQNTSGIYSFLPLGKRVLQKVETVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                ++E+ +P LQ A+LW ESGR+ SYG E++RL DRND+    G THEEV+T + R 
Sbjct: 61  MEAANSVEIFMPALQQAELWQESGRWYSYGDELMRLKDRNDREFALGATHEEVITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   +QIQ KFRDE RPRFG++R REFLMKDAYSF  T E    +Y+ M  +
Sbjct: 121 EIKSYKKLPLNLFQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHATTESLDETYDVMMQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK---DFMDFPIPSENT 237
           Y  IF RLGL    + A+SG IGG  +HEF+VL++ GE  +  S       +  + + N 
Sbjct: 181 YTNIFTRLGLNFRAVIADSGAIGGKDNHEFMVLSEIGEDTIAYSDTSSYAANIEMAAVNV 240

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +         +E+   P   T     E    +  +  +      +   +          
Sbjct: 241 SYPVSDETPETLEKVATPGKNTITDVAEFFGTTADKCIKTMVFKADEELVIVLARGDHEV 300

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                K A G           +  +           +    I   +    +  +  I   
Sbjct: 301 NDVKVKHATGATVIEMATPEEVQQLLGCDIGSLGPINLPEDIRLFADHAVENMVNGIAGA 360

Query: 358 DQ 359
           ++
Sbjct: 361 NE 362



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 3/229 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     +   ++  +       +      ++         A  D+   +  D+ P+ +  
Sbjct: 340 EDIRLFADHAVENMVNGIAGANESGYHFKNVTPGKDFTVPAFHDLRFIQEGDASPDGQGT 399

Query: 278 SA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               +GIEVGHIF  GT YS+P+  TF    GK     MG YGIG  RV+AAV E   D 
Sbjct: 400 IQFAKGIEVGHIFKLGTTYSIPLKGTFLNDQGKSMPYIMGCYGIGVSRVLAAVAEQFQDE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G  WPD VAP+++ L+ +   D   R+  E++YA L +   +V  DD  E+ G +FA A
Sbjct: 460 NGFTWPDVVAPYEVHLVPVNVKDDTQRELGEELYALLKENRYEVLLDDRKERAGVKFADA 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           DL+G P+++ +G K  ++  +E+K R TG   + + +EV+      F  
Sbjct: 520 DLIGLPIRITIGKK-AAEGILEVKIRRTGETFEWTRDEVLEKIQQFFKK 567


>gi|299534746|ref|ZP_07048076.1| prolyl-tRNA synthetase 1 [Lysinibacillus fusiformis ZC1]
 gi|298729834|gb|EFI70379.1| prolyl-tRNA synthetase 1 [Lysinibacillus fusiformis ZC1]
          Length = 568

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 118/235 (50%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE+ SHK +LR G I Q++ G+YS+LPL ++ L  +  IIREE
Sbjct: 1   MKQSKTFIPTLREVPADAEVKSHKQLLRAGFIRQNTSGVYSYLPLAKRVLTKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+ +P+LQSA+LW ESGR++ YG E++RL DR+D+    GPTHEEV+T + R 
Sbjct: 61  MEAINSIELLMPSLQSAELWQESGRWEKYGPELMRLKDRHDRDFALGPTHEEVITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y  M+ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASRESLDETYEDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF RLGL    + A++G IGG  +HEF+VL++ GE  +  S    D+    E
Sbjct: 181 YSNIFSRLGLNYRAVIADAGSIGGKGTHEFMVLSEIGEDTIAYSDT-SDYAANIE 234



 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/187 (37%), Positives = 97/187 (51%), Gaps = 3/187 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   +  D  P+ +       GIEVGHIF  GT YS  M+ TF    GK     MG YG
Sbjct: 383 DIRFIQEGDPSPDGQGNIKFAEGIEVGHIFKLGTTYSAKMNGTFLDEQGKAQPFIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R++AAV E   D  G  WP  +AP+ I ++ +   D+      E++Y  L     D
Sbjct: 443 IGVSRILAAVAEHFQDDNGFTWPTQLAPYDIHVVPVNTKDEAQVALAEELYGLLKSYRYD 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P++V VG K  ++  VE+K R TG   +   EEVI+  
Sbjct: 503 VLLDDRPERAGVKFADADLIGLPVRVTVGKK-ATEGIVEVKFRQTGETFEWKKEEVIDRL 561

Query: 439 SHRFSNN 445
           +  F  N
Sbjct: 562 NEFFRKN 568


>gi|242046134|ref|XP_002460938.1| hypothetical protein SORBIDRAFT_02g037830 [Sorghum bicolor]
 gi|241924315|gb|EER97459.1| hypothetical protein SORBIDRAFT_02g037830 [Sorghum bicolor]
          Length = 648

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 154/445 (34%), Gaps = 42/445 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K ++   +E  R D       L L +  I      G+  W P G      +    ++   
Sbjct: 239 KAYIHFKEEAKRRDHRRLGQDLDLFS--IQDDAGGGLVFWHPKGAIIRHILEDSWKQIHL 296

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  ADLW  SG  D Y + M    D  D+     P +      +++  +
Sbjct: 297 QHGYDLLYTPHVAKADLWKISGHIDFYKESMYNQMDVEDEMYQLRPMNCPYHILVYKRKL 356

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+ P    ++   +R EL     G+ R R F   DA+ F L  +        +    
Sbjct: 357 HSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDE-IRGVLDLT 415

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +I  + G +   +   + P                      + D  +    +     DD
Sbjct: 416 EQILGQFGFRYYEINLSTRPEKS-----------------VGTDDIWEKATIALKNALDD 458

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 + E   A Y    D+   K+ D+L    + S   ++    F    ++      T
Sbjct: 459 KGWEYKVDEGGGAFYGPKIDL---KIEDALGRKWQCSTVQVD----FNLPERFD----IT 507

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  ++ +      +    +G++     V+    +     +P  +AP +  ++ +  ++  
Sbjct: 508 YVDSNSEKKRPIMIHRAILGSLERFFGVLI---EHYAGDFPLWLAPTQARILPVTDNE-- 562

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C ++ + L   G  V     GE++      A+    PL  +VG K V    + I+ 
Sbjct: 563 -LQYCNEVASELKSRGLRVEV-CHGERLPKLIRNAETQKVPLMAVVGPKEVQARTLTIRS 620

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    M ++E I       +N 
Sbjct: 621 RHNGEIGTMPVDEFITRLQLAVANK 645


>gi|224532379|ref|ZP_03673009.1| threonine--tRNA ligase [Borrelia burgdorferi WI91-23]
 gi|224512686|gb|EEF83057.1| threonine--tRNA ligase [Borrelia burgdorferi WI91-23]
          Length = 581

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 156/443 (35%), Gaps = 37/443 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L + +E   RD      +L L +    +   G+  + P G K    +    REE ++
Sbjct: 172 RSYLNLREEIKKRDHRKLGKELDLFSIH-EEIGPGLVFFHPNGAKIRALIEDFWREEHSK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y   M    + +       P +      I+ +   
Sbjct: 231 NGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYNTGKH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G+MR+R F   DA+      +       ++    +
Sbjct: 291 SYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHIICTHSQVLDE-IKEVLRFAI 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G  ++     + P                  +   +    +  +        D 
Sbjct: 350 YMWSKFGFSNLKAYLSTKP-----------------DKSVGNDSDWEMSLKVLEETLSDF 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I +   A Y    D+   K+ DSL    ++S    +    F    ++++  +A  
Sbjct: 393 EVPYEIDKGGGAFYGPKIDL---KIVDSLEREWQMSTIQFD----FNLPERFNMTYTAE- 444

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +     +    +G++     ++   + G   +W   V    I + NI        
Sbjct: 445 --DGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLWLSPVQVVIIPVNNI------VE 496

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K++ +    G  +  D+   ++ ++         P   I+G +  ++ ++ I+ R 
Sbjct: 497 DYAIKVFNKFKNGGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREATEERISIRTRT 556

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 + L+E + +   +  + 
Sbjct: 557 NEQINGIKLDEALKFILFKIRDK 579


>gi|220903768|ref|YP_002479080.1| threonyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254783519|sp|B8J4E4|SYT_DESDA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219868067|gb|ACL48402.1| threonyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 647

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 146/436 (33%), Gaps = 41/436 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  ++E  R D      +L L T      + G+  WLP G      +    R+E  + G
Sbjct: 233 YLKQMEEAKRRDHRKLGRELSLFT-FKEDVAPGMVFWLPKGMLVRTILEDFWRKEHLKRG 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L   + W +SG YD Y + M       + A    P +      I+ + + SY
Sbjct: 292 YDIVQGPQLLRVETWQKSGHYDHYRENM-YFTQIEEDAYGVKPMNCISHMLIYGNELHSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  ++++ +  R E      G++R R+F   DA+      +        + +     
Sbjct: 351 RDLPQRYFELGVVHRHEKSGVLHGLLRVRQFTQDDAHIICAPEQLEGEILEVIHLI---- 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                            +      E+ V   T       + +  +    +     +    
Sbjct: 407 ---------------RDLMNLFGFEYKVAVSTRPESSIGTDEAWEMATSALVQAVEKAGL 451

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +I E   A Y    DV    L D +    + S   ++    F    ++      T+ G
Sbjct: 452 PYTINEGDGAFYGPKIDVR---LLDCIGREWQCSTIQVD----FTLPERFD----LTYVG 500

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+ H    +    +G++     ++  +  G    W        +++       +   +
Sbjct: 501 QDGERHRPVMVHRAIMGSLERFIGILVENFAGALPTWLAPEQARLLTVT------EAGDE 554

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           A   +      +G     D   E++G +   A L   P  ++VG K V      ++ R  
Sbjct: 555 AVSSMLEEFKALGIRAQADTRNEKLGFKVREAQLAKVPYILVVGEKEVQAGGANVRLRNG 614

Query: 424 GIREDMSLEEVINYAS 439
                 S+ E+     
Sbjct: 615 DNLGLKSVAEIAALIR 630


>gi|10438145|dbj|BAB15178.1| unnamed protein product [Homo sapiens]
          Length = 402

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 136/423 (32%), Positives = 217/423 (51%), Gaps = 35/423 (8%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           ML+ G+I+  S G Y  LP   +A++ +  +I +E    G  ++++P+L  A+LW  + R
Sbjct: 1   MLQVGLIYPASPGCYHLLPYTVRAMEKLVRVIDQEMQAIGGQKVNMPSLSPAELWQATNR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           +D  GKE+LRL DR+ K    GPTHEE +T  I      SY+ LPF  YQ+  KFRDE R
Sbjct: 61  WDLMGKELLRLRDRHGKEYCLGPTHEEAITALIASQKKLSYKQLPFLLYQVTRKFRDEPR 120

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           PRFG++R REF MKD Y+FD +PE ++ +Y+ +  +Y  +F++LGL  + ++A+ G IGG
Sbjct: 121 PRFGLLRGREFYMKDMYTFDSSPEAAQQTYSLVCDAYCSLFNKLGLPFVKVQADVGTIGG 180

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +SHEF +  D GE ++                                +  A    +  
Sbjct: 181 TVSHEFQLPVDIGEDRLAICPRC--------------------------SFSANMETLDL 214

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
            ++     +      +GIEVGH FY GTKYS   +A F    GK    +MG YG+G  R+
Sbjct: 215 SQMNCPACQGPLTKTKGIEVGHTFYLGTKYSSIFNAQFTNVCGKPTLAEMGCYGLGVTRI 274

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSKV----GCD 378
           +AA IE       + WP  +AP++  LI  K    +Q   +   ++Y  +++       +
Sbjct: 275 LAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEQAASELIGQLYDHITEAVPQLHGE 334

Query: 379 VFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVIN 436
           V  DD     IG++   A+  G+P  +I G + + D    E+  + TG    ++ + V++
Sbjct: 335 VLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALEDPAHFEVWCQNTGEVAFLTKDGVMD 394

Query: 437 YAS 439
             +
Sbjct: 395 LLT 397


>gi|294811598|ref|ZP_06770241.1| Threonyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|294324197|gb|EFG05840.1| Threonyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 719

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 65/449 (14%), Positives = 139/449 (30%), Gaps = 38/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L +    +   G+  + P G      +    R+   
Sbjct: 306 LKQYLEFLAEAEKRDHRRLGSELDLFSV-PDEIGSGLAVFHPRGGIVRRVMEDYSRKRHE 364

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSH 121
             G   +  P      L+ +SG  D Y + M               P +  +   IF + 
Sbjct: 365 EEGYEFVYTPHATKGTLFEKSGHLDWYAEGMYPPMQLDGGTDYYLKPMNCPMHNLIFDAR 424

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR LP   ++    +R E      G+ R+R F   DA+ +    + ++   ++    
Sbjct: 425 GRSYRELPLRLFEFGTVYRHEKSGVVHGLTRARGFTQDDAHIYCTREQMAEEL-DRTLTF 483

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L +    GL    +   +                    +   S +  +          +
Sbjct: 484 VLNLLRDYGLTDFYLELST----------------KDPEKYVGSDETWEEATEVLRRVAE 527

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +      A Y       + +  D++    ++S   ++    F    ++    + 
Sbjct: 528 KQGLPLTPDPGGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FNLPERF----NL 576

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   DG       +     G++    AV+    +      P  +AP +   I I     
Sbjct: 577 EYTAPDGSRQRPVMIHRALFGSIERFFAVLL---EHYAGAMPPWLAPVQAVGIPIG---D 630

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  +   A   K G  V  D   +++  +      L  P  +IVG + ++   V  +
Sbjct: 631 AHIEYLQSFAAEAKKRGLRVDVDASSDRMQKKIRNHQKLKVPFMIIVGDEDMNAGTVSFR 690

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPV 448
           +R       +  +  +       ++   V
Sbjct: 691 YRDGSQENGIPRDAALAKLEQVVADRVQV 719


>gi|161344091|ref|YP_400976.2| prolyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
 gi|114152269|sp|Q31LT0|SYP_SYNE7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 600

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 115/240 (47%), Positives = 154/240 (64%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I + + GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIASGIYAYLPLMWRVLRKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA E  +P LQ A+LW ESGR+++Y K    M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MDATGAQETLLPQLQPAELWQESGRWETYTKAEGIMFSLDDRQQRQLGLGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y  M
Sbjct: 121 ARDLIRSYRQLPQNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLRQTYAAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  IF R GL+   + A+SG IGG  S EF++LAD GE ++  ++D   +    E  
Sbjct: 181 DQAYRNIFRRCGLQFRAVEADSGAIGGSASQEFMILADAGEDEILYTEDGR-YAANVEKA 239



 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 92/168 (54%), Gaps = 1/168 (0%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             SARGIE GHIF  G KYS  M ATF   +G +  + MG YGIG  RV  A +E S+D 
Sbjct: 430 LASARGIEAGHIFQLGLKYSQAMGATFTTENGTEEPLWMGCYGIGVSRVAQAAVEQSYDK 489

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GIIWP ++AP++  ++     D     A EKIYA L+  G +   DD  E+ G +F  A
Sbjct: 490 DGIIWPVAIAPYQAVVVIPNITDTEQVAAAEKIYADLTAAGIETLLDDRDERAGVKFKDA 549

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           DL+G P +++ G + + + KVE+  R +     +++  V+       +
Sbjct: 550 DLIGIPYRIVTG-RSLKEGKVEVVQRASKESSVIAVGSVVETVQDWIA 596


>gi|81169649|gb|ABB57989.1| prolyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
          Length = 606

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 115/240 (47%), Positives = 154/240 (64%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I + + GIY++LPL  + L  V+ I+REE
Sbjct: 7   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIASGIYAYLPLMWRVLRKVSQIVREE 66

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA E  +P LQ A+LW ESGR+++Y K    M  L DR  + +  GPTHEEV+T +
Sbjct: 67  MDATGAQETLLPQLQPAELWQESGRWETYTKAEGIMFSLDDRQQRQLGLGPTHEEVITAV 126

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y  M
Sbjct: 127 ARDLIRSYRQLPQNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLRQTYAAM 186

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  IF R GL+   + A+SG IGG  S EF++LAD GE ++  ++D   +    E  
Sbjct: 187 DQAYRNIFRRCGLQFRAVEADSGAIGGSASQEFMILADAGEDEILYTEDGR-YAANVEKA 245



 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 92/168 (54%), Gaps = 1/168 (0%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             SARGIE GHIF  G KYS  M ATF   +G +  + MG YGIG  RV  A +E S+D 
Sbjct: 436 LASARGIEAGHIFQLGLKYSQAMGATFTTENGTEEPLWMGCYGIGVSRVAQAAVEQSYDK 495

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GIIWP ++AP++  ++     D     A EKIYA L+  G +   DD  E+ G +F  A
Sbjct: 496 DGIIWPVAIAPYQAVVVIPNITDTEQVAAAEKIYADLTAAGIETLLDDRDERAGVKFKDA 555

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           DL+G P +++ G + + + KVE+  R +     +++  V+       +
Sbjct: 556 DLIGIPYRIVTG-RSLKEGKVEVVQRASKESSVIAVGSVVETVQDWIA 602


>gi|58584729|ref|YP_198302.1| threonyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|73919844|sp|Q5GSG4|SYT_WOLTR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|58419045|gb|AAW71060.1| Threonyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 632

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 157/441 (35%), Gaps = 40/441 (9%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
             +L  L+E   RD    +  + L    I + + G   W   G    + + + IR++   
Sbjct: 227 NIYLKRLEEAKKRDHRRIAKDMDLF--HIQEEAVGQVFWHEQGYTLYNVLESYIRKKLIN 284

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L S +LW +SG +D + + M  + +   K +   P +      IF S+ +
Sbjct: 285 NGYAEVKTPILVSKELWEKSGHWDKFRENMFIVDESESKKLAIKPMNCPCHVQIFNSYTR 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYRNLP    +  +  R+E      G+MR R F   DA+ F +  + +  +         
Sbjct: 345 SYRNLPIRMAEFGMCHRNESSGSLHGLMRVRGFTQDDAHIFCMEEQVNSETVKF-CALLK 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++  LG   I ++    P      +E                   D    +      + 
Sbjct: 404 EVYSELGFNEISVKFSDRPNVRAGDNE-----------------VWDRAEKALLEAVKEA 446

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    +     L D++  + +     ++       G        A +
Sbjct: 447 GLSYELNPGEGAFYGPKLEFI---LKDAIGRSWQCGTLQVDFILPERLG--------AFY 495

Query: 303 KGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG+  H V +    +G       ++   + GK  +W        +++ N        
Sbjct: 496 IGADGQKYHPVMLHRAILGTFERFIGILIEHYAGKFPLWLAPTQLVILTVTN------EA 549

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   +I   L + G  V  D   E++  +  +      P+  IVG   V+   V +++ 
Sbjct: 550 DNYATEISNVLKEQGVRVKTDLTNEKVSYKIRLHSSNKVPILWIVGKNEVASKTVSVRNL 609

Query: 422 LTGIREDMSLEEVINYASHRF 442
            +  +E  S E+ +     + 
Sbjct: 610 GSEKQESSSCEKAVKLLLKKV 630


>gi|257453930|ref|ZP_05619207.1| prolyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
 gi|257448702|gb|EEV23668.1| prolyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
          Length = 586

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 122/273 (44%), Positives = 170/273 (62%), Gaps = 2/273 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++    L+E P DA+I S +LMLR GMI + + G+Y+WLP+G K L  V  IIREE
Sbjct: 1   MRASQFTFATLKETPSDADIISSQLMLRAGMIRKSASGLYTWLPMGLKTLQKVKKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     E+ +P +QSA+LW ESGR+++YG E+LR  DR+ +  + GPTHEEV+TDI R+
Sbjct: 61  MDAINCQELLMPVVQSAELWQESGRWEAYGPELLRFKDRHQRDFVLGPTHEEVITDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP ++YQ+Q KFRDE+RPRFGVMRSREF+MKDAYSF +     + +Y+ M+ +
Sbjct: 121 LLKSYKQLPVSYYQVQTKFRDEIRPRFGVMRSREFIMKDAYSFHIDQPSLQRTYDDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP--IPSENTD 238
           Y  IF RLGL    ++A++G IGG  SHEF VLA +GE  +  S           +E   
Sbjct: 181 YHNIFTRLGLDFRAVQADTGSIGGFASHEFQVLAGSGEDDIVFSDSSAYAANIELAEAVT 240

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             +  +        + P   T +   E L   L
Sbjct: 241 LGERAAATQNKTAVSTPNMPTCEQVAEHLGLPL 273



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 90/206 (43%), Gaps = 16/206 (7%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A     +D+ N    D  P+ +      RGIEVGHIF  G KY+  ++    G  GK
Sbjct: 376 ERDASITEIADIRNVVEGDPSPDGQGTLQIRRGIEVGHIFQLGDKYAKALNCAVMGEQGK 435

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV------APFKISLINIKAH----- 357
                MG YGIG  R+VAA IE +HD  GIIW  S             +  IK       
Sbjct: 436 PVITMMGCYGIGVTRIVAAAIEQNHDDNGIIWKTSSTGESLAPFTVAIVPMIKGKMKDAA 495

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV-SDSKV 416
                   E +Y  L   G DV  DD  E+ G +FA  +L+G P ++++  K +    +V
Sbjct: 496 TDKAMQLAEALYTELKAQGVDVLLDDRDERAGVKFADLELIGIPHRIVISEKNISETGEV 555

Query: 417 --EIKHRLTGIREDMSLEEVINYASH 440
             E  +R  G ++ ++  ++      
Sbjct: 556 KYEYVNRQDGEKQLLTAAQLNQLFKD 581


>gi|255994086|ref|ZP_05427221.1| proline--tRNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993754|gb|EEU03843.1| proline--tRNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 582

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 117/295 (39%), Positives = 169/295 (57%), Gaps = 17/295 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK +   L+E P +AE+ SH L+LR GMI + + G+Y ++P+G KAL  +  IIR E
Sbjct: 1   MRLSKAYFKTLREVPAEAELKSHILLLRAGMIRKLASGVYGYMPMGLKALKKIENIIRNE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +  LQ A+LW ESGR+++YG EM R+ DR+D+    GPTHEEV TDI R+
Sbjct: 61  MDAEGCQEILMSALQPAELWKESGRWNAYGPEMWRVCDRHDREFCLGPTHEEVFTDIIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + S+R LP   YQIQ K+RDE RPRFG+MRSREF+MKD+YSFD   EG   SY  M+  
Sbjct: 121 DVDSHRKLPINLYQIQTKYRDEARPRFGLMRSREFIMKDSYSFDKDEEGLDVSYENMYKR 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF------------- 227
           Y  +F R+ L  +P+ A++G +GG+ SHEFI  AD GE+++                   
Sbjct: 181 YENVFKRMELDVMPVEADTGAMGGNGSHEFIAKADAGESEIAFCPSCKMAATVERAVCGK 240

Query: 228 ----MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                +  +P          ++ S+ E    P   +      K+  +  + + V+
Sbjct: 241 VKPSSEAELPMNKVHTPGTKTIESVCEYLNKPTDKSIKAIFLKVIPAEGDEQLVA 295



 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 102/207 (49%), Gaps = 9/207 (4%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +    + A   A      E     +   K +  RGIEVG +F  GTKYS PM A +K  D
Sbjct: 376 NYGRDYEADIVADIKQLLEGDPCPVCGEKILYTRGIEVGQLFKLGTKYSEPMKAIYKDED 435

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
             +  + MGSYGIG  R +AAVIE + D  GIIWP  VAP+ + +  I   D+      E
Sbjct: 436 MNERLMYMGSYGIGVSRTLAAVIEQNSDENGIIWPLPVAPYHVIITLINPSDKDQTALAE 495

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT--- 423
            IY +L K   DV  DD  E+ G +F  ADL+G P ++ VG +  +D KVE K R +   
Sbjct: 496 DIYEKLRKSNIDVILDDRDERPGVKFKDADLIGIPFRINVG-RDAADGKVEFKVRGSNYG 554

Query: 424 ---GIREDMSLE--EVINYASHRFSNN 445
                RE + ++  E +       S N
Sbjct: 555 MDMKKRETVVIDSNEAVKNIISVVSEN 581


>gi|269977288|ref|ZP_06184261.1| threonyl-tRNA synthetase [Mobiluncus mulieris 28-1]
 gi|269934591|gb|EEZ91152.1| threonyl-tRNA synthetase [Mobiluncus mulieris 28-1]
          Length = 669

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 65/456 (14%), Positives = 138/456 (30%), Gaps = 48/456 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  L+E   RD      +L L +    +   G+  + P G      +    R+    
Sbjct: 246 KAYVTRLEEAEKRDHRRLGTELDLFS-FPEEIGSGLPVFHPKGALVRMEMENYSRQRHLE 304

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
            G   +S P +    L+  SG    Y + M                 +        P + 
Sbjct: 305 EGYSFVSTPHVTKGQLFETSGHLSWYKEGMFPAMHLDEERDAQGNVTKEGADYYLKPMNC 364

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R+R F   D++ +    +  
Sbjct: 365 PMHNLIFKSRTRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDSHIYCTRDQMK 424

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 425 DELTK-LLTFVLDLLKDYGLDDFYLELST----------------KNPQKFVGSDEVWEE 467

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +     +          +  A Y       + +  D++    ++S   ++    F  
Sbjct: 468 ATRTLQEVAEASGLELRPDPEGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FNL 520

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++ L  +A       +   V +     G++     V+   + G    W          
Sbjct: 521 PERFELEYTAA---DGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW------LAPV 571

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            + +          CE +  +L      V  D+  ++ G +   A     P  +IVG + 
Sbjct: 572 QVRLVPVADTFNAYCEDVAKQLRAENVRVEIDESDDRFGKKIRNAAKDKVPFTLIVGGED 631

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
                V  ++R    +  + +   I   +    + +
Sbjct: 632 AEHGAVSFRYRGGEQKNGVKISAAIQEITETIRSRK 667


>gi|46447649|ref|YP_009014.1| threonyl-tRNA synthetase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|73919812|sp|Q6M9L0|SYT_PARUW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|46401290|emb|CAF24739.1| probable threonine-tRNA ligase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 650

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 149/447 (33%), Gaps = 39/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD ++   KL L +  + + + G+    P G    + + A IRE 
Sbjct: 230 KLLKDYLHQLEEAKKRDHKLLGAKLDLFS--LKEEAPGMPFIHPKGLIVWNQLVAYIREC 287

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R   IE+  PT+ + +LW  SG + +Y + M  ++   D+     P +       ++S
Sbjct: 288 LSRHDYIEIKTPTMMTKELWEISGHWGNYRQNMF-ISQIEDRDFAIKPMNCPGCMLYYKS 346

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           H  SYR LP    +I    R E      G+ R R F   DA+ F   P   +     +  
Sbjct: 347 HTHSYRELPLRIAEIGNVHRYEPSGSLSGLFRVRSFHQDDAHIFMK-PSDIQQEILGVLA 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   GL    +   + P                E     +    +          
Sbjct: 406 LADEIYSTFGLSY-RLELSTRP----------------EKNTIGTDHEWEVATAGLKGAL 448

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D++     I E   A Y    D H   + D++  + +     +++     F  +Y     
Sbjct: 449 DEMGKEYRINEGDGAFYGPKIDFH---IRDAINRSWQCGTIQLDMALPEKFELEY----- 500

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            TF     +   +   +      R    +IE       +    S   F            
Sbjct: 501 -TFSDGTRQRPVMIHRAIFGSIERFFGILIEHYVGKFPLWLSPSQIRFITVA-------D 552

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  ++  R    G  V  D   E +  +   A L  F   + +G + V      ++
Sbjct: 553 RHEPYARELAKRFKNAGFHVDVDSTQESVSKKVRNAQLAQFNYILTIGDQEVEHKTANLR 612

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R   +  ++ ++E I          +
Sbjct: 613 TRDNVVHGEIQIDEFIQKLEIEKQQRQ 639


>gi|308173840|ref|YP_003920545.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307606704|emb|CBI43075.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
          Length = 642

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 155/445 (34%), Gaps = 44/445 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
             +L+E   R+      +L L   M  + + G+  +LP GQ   + + + +R +Q+    
Sbjct: 234 FQLLKEAEKRNHRKLGAELQLF--MFSEEAPGMPFYLPNGQFIRNTLESFLRSKQDAYHY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y + M   ++ + +     P +      IF+  ++SYR
Sbjct: 292 QEVRTPMMMNQRLWEQSGHWDHYKENM-YFSEADQQRFALKPMNCPGHMLIFKERLRSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    +     R E      G++R R F   DA+ F  TPE  +            ++
Sbjct: 351 ELPIRMAEFGQVHRHEFSGALNGLLRVRSFCQDDAHIFV-TPEQIESEIASALQLIHEVY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G         + P                      S+   D    +      +    
Sbjct: 410 TAFGFSYDI-ELSTRP-----------------EDYMGSEHLWDRAESALERVLKEQGYD 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                   A Y    D+H   + D+L  + + +   ++    F    K+      T+   
Sbjct: 452 FRFNRGDGAFYGPKIDIH---IKDALNRSHQCATVQLD----FQMPEKFD----LTYIDE 500

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +     G++     +I   + G   +W        +    I   +   RD 
Sbjct: 501 KNQKVRPVVIHRAVFGSLDRFLGIITEHYGGAFPLWLA-----PVQAKIIPVSNTAHRDC 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E+++ ++ K G     D   E++G +   A +   P   +VG +      V ++     
Sbjct: 556 AEQVHRQMKKAGIRAELDQRDEKLGYKIREAQMKKIPYIAVVGDQECRHHTVHVRQYGQE 615

Query: 425 IREDMSLEEVINYASHRFSNNRPVL 449
              + S+ + I+      +  + V+
Sbjct: 616 NTFEESVSDFISRI---INETKQVI 637


>gi|221217966|ref|ZP_03589433.1| threonyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|224533347|ref|ZP_03673941.1| threonyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
 gi|225549973|ref|ZP_03770934.1| threonyl-tRNA synthetase [Borrelia burgdorferi 118a]
 gi|221192272|gb|EEE18492.1| threonyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|224513512|gb|EEF83869.1| threonyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
 gi|225369432|gb|EEG98884.1| threonyl-tRNA synthetase [Borrelia burgdorferi 118a]
          Length = 581

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 154/443 (34%), Gaps = 37/443 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L + +E   RD      +L L +    +   G+  + P G K    +    REE ++
Sbjct: 172 RSYLNLREEIKKRDHRKLGKELDLFSIH-EEIGPGLVFFHPNGAKIRALIEDFWREEHSK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y   M    + +       P +      I+ +   
Sbjct: 231 NGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYNTGKH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G+MR+R F   DA+      +       ++    +
Sbjct: 291 SYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHIICTHSQVLDE-IKEVLRFAI 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G  +      + P                  +   +    +  +        D 
Sbjct: 350 YMWSKFGFSNPKAYLSTKP-----------------DKSVGNDSDWEMSLKVLEETLSDF 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I +   A Y    D+   K+ DSL    ++S    +    F    ++++  +A  
Sbjct: 393 EVPYEIDKGGGAFYGPKIDL---KIVDSLEREWQMSTIQFD----FNLPERFNMTYTAE- 444

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +     +    +G++     ++   + G   +W   V    I + NI        
Sbjct: 445 --DGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLWLSPVQVVIIPVNNI------VE 496

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K++ +    G  +  D+   ++ ++         P   I+G +   + ++ I+ R 
Sbjct: 497 DYAIKVFNKFKNEGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREAIEERISIRTRT 556

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 M L+E + +   +  + 
Sbjct: 557 NEQINGMKLDEALKFILFKIRDK 579


>gi|153003352|ref|YP_001377677.1| prolyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
 gi|166980097|sp|A7H7J7|SYP_ANADF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152026925|gb|ABS24693.1| prolyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
          Length = 575

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 108/263 (41%), Positives = 149/263 (56%), Gaps = 3/263 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+P L+E P DA++ASHKL++R G I Q   GIY +LPL ++ L  + AI+REE 
Sbjct: 5   RLSQAFVPTLKEAPADAQVASHKLLVRAGFIRQLGAGIYDYLPLAKRTLAKIEAIVREEM 64

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E  +P L  A++W ESGR++  G  M RL DR +     G THEE+ T I R  
Sbjct: 65  DAIGGQEFYLPALHPAEIWKESGRWEVMGDNMFRLKDRKNGDYCLGMTHEEIFTAIARDE 124

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR LP  +YQIQ KFRDE RP+ G++R R+F MKDAYSFD+   G   SY     +Y
Sbjct: 125 LRSYRQLPQVWYQIQTKFRDEPRPKSGLLRVRQFTMKDAYSFDVDRAGLDKSYEDQRRAY 184

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF---MDFPIPSENTD 238
            RIF R GL  + ++A SG +GG  S EF+V  D GE  V          +    +    
Sbjct: 185 ERIFTRCGLDFVAVQAHSGAMGGSESSEFMVRTDAGEDLVAACPRCRYAANTETATSRLA 244

Query: 239 FDDIISLNSIVEQWTAPYAATSD 261
            +   +     E++  P   T +
Sbjct: 245 SEQDGAGLPKPEKFATPGVVTIE 267



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/197 (37%), Positives = 107/197 (54%), Gaps = 3/197 (1%)

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
            T P+A  +++   +  +  P         + +EVGHIF  GTKYS  M AT   ADGK 
Sbjct: 380 LTGPHATVAELRTVRAGEGCPRCDGTLDVFKALEVGHIFKLGTKYSESMKATVLDADGKA 439

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             + MGSYGIG  R++AA IE  HD  GI WP ++APF+ +++ +   +   + A +++ 
Sbjct: 440 VPIVMGSYGIGVERIMAAAIELHHDELGIRWPPAIAPFQATVLTLGP-EPELKKAADELV 498

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             LS  G +V  DD  E+ G +F  ADL+G PL++ VG K +++ KVE K R     E +
Sbjct: 499 KALSDAGLEVLHDDREERAGVKFKDADLVGIPLRISVGKKGLAEGKVEWKLRGDKAVELV 558

Query: 430 SLEEVINYASHRFSNNR 446
            L EV   A+      R
Sbjct: 559 PLAEVARRAAEHVRAGR 575


>gi|327441016|dbj|BAK17381.1| prolyl-tRNA synthetase [Solibacillus silvestris StLB046]
          Length = 568

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 120/269 (44%), Positives = 174/269 (64%), Gaps = 10/269 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+++K F+P L+ENP DA++ SH+++LR G I Q++ G+YS+LPL ++ L  +  IIREE
Sbjct: 1   MKQTKTFIPTLRENPSDADVKSHRMLLRAGFIRQNAAGVYSYLPLARRVLSKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+ +P LQ A+LW ESGR+++YG E++RL DR+D+    G THEEV+T + R 
Sbjct: 61  MEAINSIELLMPALQPAELWQESGRWEAYGPELMRLKDRHDRDFALGATHEEVITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y+ M+ +
Sbjct: 121 EIKSYKKLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHSSRESLDATYDDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    + A++G IGG  +HEF+VL++ GE  +  S    D+    E     
Sbjct: 181 YSNIFTRLGLNFRAVIADAGTIGGKGTHEFMVLSEIGEDTIAYSDT-SDYAANIE----- 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               +  +V ++TAP     D+   +  D
Sbjct: 235 ----MAEVVVEYTAPTTPMKDIEKIETPD 259



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/208 (33%), Positives = 111/208 (53%), Gaps = 3/208 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLP 297
           +D   L ++  +     ++  D+   +  D  P+ + +     GIEVGHIF  GT YS  
Sbjct: 362 EDGFHLLNVNPERDFAISSYEDIRFIQQGDPSPDGQGIIKFAEGIEVGHIFKLGTTYSEK 421

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           ++ATF    GK     MG YGIG  R++AAV E   D  G +WP  +AP+ + L+ + A 
Sbjct: 422 LNATFLDEQGKAKPYIMGCYGIGVSRILAAVAEHFQDENGFVWPAQLAPYDLQLVPVNAK 481

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D+      +++Y  L     +V +D+  E+ G +FA ADL+G P+++ VG K  S+  VE
Sbjct: 482 DEAQVQLADELYGVLKSYRYEVLYDNRAERAGVKFADADLIGLPVRITVGKK-ASEGLVE 540

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           +K R TG   + + EEV++  +  F  N
Sbjct: 541 VKFRSTGESAEWAKEEVVDRLNEYFRQN 568


>gi|320529253|ref|ZP_08030345.1| prolyl-tRNA synthetase [Selenomonas artemidis F0399]
 gi|320138883|gb|EFW30773.1| prolyl-tRNA synthetase [Selenomonas artemidis F0399]
          Length = 570

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 118/285 (41%), Positives = 170/285 (59%), Gaps = 2/285 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +  + P L+  P +AEIASH+L+ R G+I + + G+Y++LPL  + L  +  IIREE
Sbjct: 1   MRATNLYAPTLRNTPAEAEIASHRLLYRAGLIRKSAGGMYTYLPLAWRTLRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P LQ A+LW ESGR+ +YG EM+R+ DR+++A   GPTHEE++T + R 
Sbjct: 61  MDAAGGQEIMMPILQPAELWEESGRWGAYGAEMMRIQDRHERAFCLGPTHEEMITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFGVMRSREF+M+D YSFD   EG   SY KM+ +
Sbjct: 121 ELRSYKQLPVMLYQIQDKFRDERRPRFGVMRSREFIMQDLYSFDKDVEGMHESYRKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP--IPSENTD 238
           Y  +F R GL    + A+ G IGG  S EF VLA  GE+++ C            ++   
Sbjct: 181 YTNVFTRCGLNFRAVEADCGAIGGGRSEEFTVLAPEGESRIACCDACSYAASDEKAQLRP 240

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
            D        +E+ + P+ +T  +  E L   + +  +  A   E
Sbjct: 241 LDAPDEAELPLEKVSTPHTSTIALLAEFLKIPVEKTIKAVAYQTE 285



 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 107/218 (49%)

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
             M   +   N       ++N + +      A    V    L  +  E     +RGIE G
Sbjct: 351 MRMKNAVSGANEQDYHYTNVNPVRDFAHVTVADIRLVAEGDLCPACGEGHLHISRGIEAG 410

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            IF  GTKYS  M A F   DGK   +QMG YGIG  R +AA IE +HD  GIIWP ++A
Sbjct: 411 QIFALGTKYSEAMQANFLDVDGKLKPLQMGCYGIGVGRTMAAAIEQNHDEHGIIWPRAIA 470

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P+++ ++ + A  +      E+IY  L   G DV  DD  E+ G +F   DL+G+P+++ 
Sbjct: 471 PYEVVVVAVNAKVEEQLAYAEEIYEELRAAGIDVLLDDRRERAGVKFNDCDLIGYPVRIA 530

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G K + +  +E+K R TG   + + +  +       +
Sbjct: 531 IGPKTIENGSIEVKLRRTGELVNFARDTYLKGVRDMLA 568


>gi|297626431|ref|YP_003688194.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922196|emb|CBL56764.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 680

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/451 (15%), Positives = 133/451 (29%), Gaps = 47/451 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      +L L +    +   G+  + P G      + + I +     G   
Sbjct: 248 RMAEAAKRDHRKLGQELDLFS-FPEEIGPGLVVFHPKGGILRHEIESYITKRHIDAGFDL 306

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTD 116
           +  P +   DL+  SG    Y   M                    +       +  +   
Sbjct: 307 VDTPIISKGDLFHTSGHLPYYADTMFPPMTVDEEVDAEGNVRHQGQEYYLKAMNCPMHNL 366

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP  FY++   FR E      G+ R R F   D++++    +       
Sbjct: 367 IFRSRGRSYRELPLRFYELGRDFRYEKSGVVQGLTRMRGFTQDDSHTYCTPEQAGDE-IK 425

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +   +L I    GLK   +   +                        S +  +      
Sbjct: 426 MLLGFFLSILRDFGLKEFYLELSTRDASSSKF--------------IGSDEDWEAATEIL 471

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
               +             A Y       + +  D+L    ++S    +      FG    
Sbjct: 472 RVAAESTGLELVADPGGAAFYGPKV---SVQAKDALGRTWQMSTVQYDFNQPARFG---- 524

Query: 296 LPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  ADG       +    +G++     V+   + G    W   V    I +   
Sbjct: 525 ----LEYTAADGSHQQPVMIHCAKLGSVERFIGVLTEHYAGAFPAWLSPVQVVGIPVAG- 579

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      + I  RL + G  V  D+  +++  +   A     P  +I G K     
Sbjct: 580 -----EFNGYLDTIATRLREKGVRVEVDESDDRMQKKIRNATRQKVPFMLIAGEKDREAQ 634

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V  + R       + +++ I+      ++ 
Sbjct: 635 AVSFRFRDGSQLNGVPIDDAIDRIVEHITSR 665


>gi|56752145|ref|YP_172846.1| prolyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|81820564|sp|Q5N044|SYP_SYNP6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56687104|dbj|BAD80326.1| proline-tRNA ligase [Synechococcus elongatus PCC 6301]
          Length = 600

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 115/240 (47%), Positives = 154/240 (64%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I + + GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIASGIYAYLPLMWRVLRKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA E  +P LQ A+LW ESGR+++Y K    M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MDATGAQETLLPQLQPAELWQESGRWETYAKAEGIMFSLDDRQQRQLGLGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y  M
Sbjct: 121 ARDLIRSYRQLPQNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLRQTYAAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  IF R GL+   + A+SG IGG  S EF++LAD GE ++  ++D   +    E  
Sbjct: 181 DQAYRNIFRRCGLQFRAVEADSGAIGGSASQEFMILADAGEDEILYTEDGR-YAANVEKA 239



 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 92/168 (54%), Gaps = 1/168 (0%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             SARGIE GHIF  G KYS  M ATF   +G +  + MG YGIG  RV  A +E S+D 
Sbjct: 430 LASARGIEAGHIFQLGLKYSQAMGATFTTENGTEEPLWMGCYGIGVSRVAQAAVEQSYDK 489

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GIIWP ++AP++  ++     D     A EKIYA L+  G +   DD  E+ G +F  A
Sbjct: 490 DGIIWPVAIAPYQAVVVIPNITDTEQVAAAEKIYADLTAAGIETLLDDRDERAGVKFKDA 549

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           DL+G P +++ G + + + KVE+  R +     +++  V+       +
Sbjct: 550 DLIGIPYRIVTG-RSLKEGKVEVVQRASKESSVIAVGSVVETVQDWIA 596


>gi|320011858|gb|ADW06708.1| threonyl-tRNA synthetase [Streptomyces flavogriseus ATCC 33331]
          Length = 658

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/442 (15%), Positives = 141/442 (31%), Gaps = 38/442 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD     ++L L +    +   G+  + P G      +    R      G   +
Sbjct: 252 LEEAAKRDHRKLGNELDLFS-FPDEIGPGLAVFHPKGGVIRRAMEDYSRRRHEEEGYEFV 310

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             P      L+ +SG  D Y   M      +D       P +  +   IF +  +SYR L
Sbjct: 311 YSPHATKGKLFEKSGHLDWYADGMYPPMQLDDGVDYYLKPMNCPMHNLIFDARGRSYREL 370

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P   ++    +R E      G+ RSR F   DA+ +    + ++   ++     L +   
Sbjct: 371 PLRLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIYCTKEQMAEEL-DRTLTFVLNLLRD 429

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            GL    +   +                    +   S +  +    +     +       
Sbjct: 430 YGLTDFYLELST----------------KDPEKFVGSDEIWEEATETLRQVAEKQGLPLV 473

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                 A Y       + +  D++    ++S   ++    F    ++       + G DG
Sbjct: 474 PDPGGAAFYGPKI---SVQCKDAIGRTWQMSTVQLD----FNLPERFD----LEYTGPDG 522

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                  +     G++    AV+    +     +P  +AP +   I I           +
Sbjct: 523 TKQRPVMIHRALFGSIERFFAVLL---EHYAGAFPVWLAPVQAVGIPIG---DTHIPYLQ 576

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +  A+  K G  V  D   +++  +         P  +I G + +++  V  ++R     
Sbjct: 577 EFAAKARKQGLRVDVDASSDRMQKKIRNQQKQKVPFMIIAGDEDMANGAVSFRYRDGSQE 636

Query: 427 EDMSLEEVINYASHRFSNNRPV 448
             + ++E I   +    +   V
Sbjct: 637 NGIPVDEAIAKIAKAVEDRVQV 658


>gi|297562207|ref|YP_003681181.1| threonyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846655|gb|ADH68675.1| threonyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 657

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 65/442 (14%), Positives = 135/442 (30%), Gaps = 36/442 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L + +  +   G+  + P G      +    R      G 
Sbjct: 250 LTFLEEAEKRDHRKLGSELDLFS-IPDEIGSGLAVFHPKGGTVRRVMEDYSRRRHEEDGY 308

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             +  P      L+ +SG  D Y   M         +     P +  +   IF +  +SY
Sbjct: 309 EFVYTPHATKGTLFEKSGHLDWYADGMYPPMQLDGGQDYYLKPMNCPMHHLIFDARGRSY 368

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP   ++    +R E      G+ R+R F   D++ +    + +    + +    L +
Sbjct: 369 RELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDSHIYCTKEQMADEL-DSLLTFVLDL 427

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               GL    +   +                    +   + +  +               
Sbjct: 428 LRDYGLDDFYLELST----------------KDPEKYVGTDEVWEEATEILREAAQKQGL 471

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y       + +  D++    ++S   ++    F    ++ L  +A    
Sbjct: 472 ELVLDPAGAAFYGPKI---SVQAKDAIGRTWQMSTIQVD----FNMPERFDLEYTAA--- 521

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              +   V +     G++    AV+   + G    W   V    I +             
Sbjct: 522 DGSRQRPVVIHRALFGSIERFFAVLLEHYAGAFPAWLAPVQAVGIPIA------DEHVPY 575

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++ ARL   G  V  D   +++  +   A     P  ++ G + VS + V  ++R   
Sbjct: 576 LRELAARLRAEGIRVEVDASDDRMQKKIRNAQKQKVPFMLLAGDEDVSKNAVSFRYRDGS 635

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               + L+E +          R
Sbjct: 636 QNNGVPLDEAVAEIVAAVRERR 657


>gi|209549439|ref|YP_002281356.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|238065117|sp|B5ZQK2|SYT_RHILW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|209535195|gb|ACI55130.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 668

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 146/447 (32%), Gaps = 46/447 (10%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      ++ L      +   G+  W   G +    + + +R       
Sbjct: 234 YLHMLAEAEKRDHRKLGREMDLF--HFQEEGPGVVFWHGKGWRIFQALVSYMRRRL-AVD 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEML-----------RLADRNDKAMIYGPTHEEVM 114
             E++ P +    LW  SG +  Y + M               + +++     P +    
Sbjct: 291 YEEVNAPQVLDTALWETSGHWGWYQENMFAVKSAHAMTHPEDKEADNRVFALKPMNCPGH 350

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHS 173
             IF+  +KSYR LP    +  L  R E      G+MR R F   DA+ F    + +   
Sbjct: 351 VQIFKHGLKSYRELPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAEC 410

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                   L ++   G K I ++  + P     S      A+   T V          I 
Sbjct: 411 LKIN-DLILSVYEDFGFKEIVVKLSTRPEKRVGSDALWDRAEAVMTDVL-------KTIE 462

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           +++        L        A Y    +     L D++    +     ++      FG  
Sbjct: 463 AQSEGRIKTGIL----PGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG-- 513

Query: 294 YSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
                 A +  ++ +      +     G+M     ++  +  G   +W   +     ++ 
Sbjct: 514 ------AFYIDSNSEKTQPVMIHRAICGSMERFLGILIENFAGHLPLWVSPLQVVVATIT 567

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                         ++   L + G +V  D   E+I  +     +   P+ ++ G K   
Sbjct: 568 ------SEADAYGLEVAEALREAGLNVETDFRNEKINYKVREHSVTKVPVIIVCGRKEAE 621

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYAS 439
           +  V I+   +  +  M L+  ++  +
Sbjct: 622 ERTVNIRRLGSQDQVSMGLDAAVDSLA 648


>gi|227875460|ref|ZP_03993601.1| threonyl-tRNA synthetase [Mobiluncus mulieris ATCC 35243]
 gi|227844014|gb|EEJ54182.1| threonyl-tRNA synthetase [Mobiluncus mulieris ATCC 35243]
          Length = 692

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 65/456 (14%), Positives = 138/456 (30%), Gaps = 48/456 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  L+E   RD      +L L +    +   G+  + P G      +    R+    
Sbjct: 269 KAYVTRLEEAEKRDHRRLGTELDLFS-FPEEIGSGLPVFHPKGALVRMEMENYSRQRHLE 327

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
            G   +S P +    L+  SG    Y + M                 +        P + 
Sbjct: 328 EGYSFVSTPHVTKGQLFETSGHLSWYKEGMFPAMHLDEERDAQGNVTKEGADYYLKPMNC 387

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R+R F   D++ +    +  
Sbjct: 388 PMHNLIFKSRTRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDSHIYCTRDQMK 447

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 448 DELTK-LLTFVLDLLKDYGLDDFYLELST----------------KNPQKFVGSDEVWEE 490

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +     +          +  A Y       + +  D++    ++S   ++    F  
Sbjct: 491 ATRTLQEVAEASGLELRPDPEGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FNL 543

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++ L  +A       +   V +     G++     V+   + G    W          
Sbjct: 544 PERFELEYTAA---DGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW------LAPV 594

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            + +          CE +  +L      V  D+  ++ G +   A     P  +IVG + 
Sbjct: 595 QVRLVPVADTFNAYCEDVAKQLRAENVRVEIDESDDRFGKKIRNAAKDKIPFTLIVGGED 654

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
                V  ++R    +  + +   I   +    + +
Sbjct: 655 AEHGAVSFRYRGGEQKNGVKISAAIQEITETIRSRK 690


>gi|126654116|ref|ZP_01725934.1| prolyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126589396|gb|EAZ83546.1| prolyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 568

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 118/235 (50%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE+ SHK +LR G I Q++ G+YS+LPL ++ L  +  IIREE
Sbjct: 1   MKQSKTFIPTLREVPADAEVKSHKQLLRAGFIRQNTSGVYSYLPLAKRVLSKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+ +P+LQSA+LW ESGR++ YG E++RL DR+D+    GPTHEEV+T + R 
Sbjct: 61  MEAINSIELLMPSLQSAELWQESGRWEKYGPELMRLKDRHDRDFALGPTHEEVITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y+ M+ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASRESLDETYDDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF RLGL    + A++G IGG  +HEF+VL++ GE  +  S    D+    E
Sbjct: 181 YSNIFSRLGLNYRAVIADAGSIGGKGTHEFMVLSEIGEDTIAYSDT-SDYAANIE 234



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 70/187 (37%), Positives = 97/187 (51%), Gaps = 3/187 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   +  D  P+ +       GIEVGHIF  GT YS  M+ TF    GK     MG YG
Sbjct: 383 DIRFIQEGDPSPDGQGTIKFAEGIEVGHIFKLGTTYSAKMNGTFLDEQGKSQPFIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R++AAV E   D  G  WP  +AP+ I ++ +   D+      +++Y  L     D
Sbjct: 443 IGVSRILAAVAEHFQDENGFTWPTQLAPYDIHVVPVNTKDEAQVALADELYGLLKSYRYD 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P++V VG K +    VE+K R TG   +   EEVI++ 
Sbjct: 503 VLLDDRAERAGVKFADADLIGLPVRVTVGKKAIE-GIVEVKFRQTGETFEWKKEEVIDHL 561

Query: 439 SHRFSNN 445
           +  F  N
Sbjct: 562 NEFFRKN 568


>gi|169827162|ref|YP_001697320.1| prolyl-tRNA synthetase 1 [Lysinibacillus sphaericus C3-41]
 gi|226701308|sp|B1HQZ9|SYP_LYSSC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|168991650|gb|ACA39190.1| Prolyl-tRNA synthetase 1 [Lysinibacillus sphaericus C3-41]
          Length = 568

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 118/235 (50%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE+ SHK +LR G I Q++ G+YS+LPL ++ L  +  IIREE
Sbjct: 1   MKQSKTFIPTLREVPADAEVKSHKQLLRAGFIRQNTSGVYSYLPLAKRVLSKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+ +P+LQSA+LW ESGR++ YG E++RL DR+D+    GPTHEEV+T + R 
Sbjct: 61  MEAINSIELLMPSLQSAELWQESGRWEKYGPELMRLKDRHDRDFALGPTHEEVITTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y+ M+ +
Sbjct: 121 EIKSYKKLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHASRESLDETYDDMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF RLGL    + A++G IGG  +HEF+VL++ GE  +  S    D+    E
Sbjct: 181 YSNIFSRLGLNYRAVIADAGSIGGKGTHEFMVLSEIGEDTIAYSDT-SDYAANIE 234



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/187 (37%), Positives = 98/187 (52%), Gaps = 3/187 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   +  D  P+ +       GIEVGHIF  GT YS  M+ TF    GK     MG YG
Sbjct: 383 DIRFIQEGDPSPDGQGTIKFAEGIEVGHIFKLGTTYSAKMNGTFLDEQGKSQPFIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R++AAV E   D  G  WP  +AP+ I ++ +   D+V     +++Y  L     D
Sbjct: 443 IGVSRILAAVAEHFQDENGFTWPTQLAPYDIHVVPVNTKDEVQVALADELYGLLKSYRYD 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P++V VG K  ++  VE+K R TG   +   EEVI+  
Sbjct: 503 VLLDDRAERAGVKFADADLIGLPVRVTVGKK-ATEGIVEVKFRQTGETFEWKKEEVIDRL 561

Query: 439 SHRFSNN 445
           +  F  N
Sbjct: 562 NEFFRKN 568


>gi|166154796|ref|YP_001654914.1| threonyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|166155671|ref|YP_001653926.1| threonyl-tRNA synthetase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336072|ref|ZP_07224316.1| threonyl-tRNA synthetase [Chlamydia trachomatis L2tet1]
 gi|238687393|sp|B0B8F5|SYT_CHLT2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238687442|sp|B0BA34|SYT_CHLTB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|165930784|emb|CAP04281.1| threonyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|165931659|emb|CAP07235.1| threonyl-tRNA synthetase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 635

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 140/445 (31%), Gaps = 42/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD  +   KL L +      S G+  + P G    + +    +    
Sbjct: 223 LKEHLHQLEEAKKRDHRVLGTKLDLFSQ--QTCSAGMPFFHPRGMVVWNALVDYWKRLHQ 280

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  ++  P L + +LW  SG +++Y + M  L   +++     P +       +++ +
Sbjct: 281 RAGYQQIQTPQLMNRELWEISGHWENYKENMYTLT-VDEEDYAIKPMNCPGCMLYYKTQL 339

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR  P    +I    R EL     G+MR R F   DA+   LTPE  +     +    
Sbjct: 340 HSYREFPLRIAEIGHVHRHELSGALSGLMRVRTFHQDDAH-VFLTPEQVEEETLNILNLV 398

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   GL+   +   + P                E     S D  +    +       
Sbjct: 399 SELYGTFGLEY-HLELSTRP----------------EQGTIGSDDLWELATEALKRALVK 441

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I     A Y    D+H           K    R  + G I              
Sbjct: 442 SQKPFIISPGEGAFYGPKIDIHV----------KDAINRTWQCGTI-QLDMFLPERFDLK 490

Query: 302 FKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +  A G+     M    +     R +  +IE       +                     
Sbjct: 491 YTNAQGEKSTPIMLHRALFGSIERFLGILIEHFKGRFPLWLSPEHVRIITVA-------D 543

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +++    S++G  V  D   E +  +   A  +     + +G K +    + ++
Sbjct: 544 RHEARAQELAKHFSQMGIIVSVDSSNESVSKKIRNAQNMQVNYMITIGDKELETHLLAVR 603

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R   +  D+++E+  +       +
Sbjct: 604 TRDNRVLNDIAVEQFSHVILEELRS 628


>gi|85716379|ref|ZP_01047351.1| threonyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
 gi|85696736|gb|EAQ34622.1| threonyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
          Length = 679

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 136/443 (30%), Gaps = 39/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W   G      V A +R       
Sbjct: 257 YLKQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHAKGWTIFQAVIAYMRRRL-AED 313

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M       D     +     P +      +F+ 
Sbjct: 314 YDEVNAPQMLDKALWETSGHWEWYRENMFAAQSAGDEAEDKRWFTIKPMNCPGHVQLFKH 373

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + +        +
Sbjct: 374 GLKSYRDLPLRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVFCTEEQLADECLKINEL 433

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                        + ++  + P     S      A+     V       +  I +E    
Sbjct: 434 ILSTYADFGFDGELTVKLSTRPEKRVGSDAAWDHAEAVMADVLKRIAASNNRIKTE---- 489

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   I     A Y    +     L D++  + +     ++      FG        
Sbjct: 490 --------INPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVDFNLPERFG-------- 530

Query: 300 ATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +     GK   V +     G++     ++     G   +W   V     ++ +     
Sbjct: 531 AFYIDADGGKKAPVMVHRAICGSIERFIGILIEHFAGHFPLWLAPVQAVVTTITSDGD-- 588

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  + + +   + G  V  D   E+I  +     L   P  ++VG K      V I
Sbjct: 589 ----EYAKAVASAARRAGLRVELDLRNEKINYKVREHSLAKIPALLVVGKKEAETESVSI 644

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  ++ M   E I      
Sbjct: 645 RRLGSDGQKVMPTGEAIAALVEE 667


>gi|187933014|ref|YP_001884453.1| prolyl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|226699132|sp|B2TIF5|SYP_CLOBB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|187721167|gb|ACD22388.1| proline--tRNA ligase [Clostridium botulinum B str. Eklund 17B]
          Length = 570

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 130/310 (41%), Positives = 178/310 (57%), Gaps = 4/310 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR+GMI + + GIY+++PLG KAL  V  IIREE
Sbjct: 1   MKMSNMLISTLREVPAEAEIDSHKLMLRSGMIRKMASGIYNYMPLGLKALKKVEDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     +  A+LW  SGR+D+YG EM R+ DRN++    GPTHEEV TDI ++
Sbjct: 61  MNEAGAQEFLASAMIPAELWQSSGRWDAYGAEMFRVKDRNERDFCLGPTHEEVFTDIAKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   +G   SYNKM+ +
Sbjct: 121 EIKSYKQLPVNLYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDKDQQGLDLSYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y++IF+R GL +  + A+SG IGG  S EF+V ++ GE  +    +  ++    E     
Sbjct: 181 YVKIFNRCGLDAKCVEADSGAIGGSNSAEFMVKSEVGEDDIVFCTEC-NYAANIEKATAR 239

Query: 240 --DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +        VE+ + P +   D  +E L  S  +  +     ++   +  F       
Sbjct: 240 LEEAEKEELIEVEKVSTPDSRGIDEVSEFLNISSKKTVKTLLYNVDGKIVAVFVRGDREV 299

Query: 298 MSATFKGADG 307
                  A  
Sbjct: 300 NEVKVANASN 309



 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 106/211 (50%), Gaps = 4/211 (1%)

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKY 294
           T  ++       V           D  N    ++ P    K   +RG EVGHIF  GTKY
Sbjct: 357 TGANETGYHIKNVNYGRDFEGTIGDYRNVVEGEACPTCGGKLTISRGTEVGHIFKLGTKY 416

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           S  M A F   +GK+    MG YGIG  R +A++IE  +D  GI+WP +VAP+ +S+I +
Sbjct: 417 SEAMDAKFIAENGKEAPFIMGCYGIGVTRTMASIIEQHNDENGIVWPLAVAPYHVSVIAV 476

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              D+       K+Y  L  +G +   DD  E+ G +F  ++++G P+++ VG K + D 
Sbjct: 477 NVKDEEQVKIATKLYEDLKSMGVEALLDDRNERAGVKFKDSEIMGIPMRITVGKK-IVDG 535

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +VE K R+ G  E + +E+V       F  N
Sbjct: 536 EVEFKLRI-GDMEVVKIEDVCQMVKGEFDKN 565


>gi|57506155|ref|ZP_00372076.1| threonyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
 gi|57015550|gb|EAL52343.1| threonyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
          Length = 602

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 160/440 (36%), Gaps = 39/440 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L I++E   RD      +L L T    Q   G+  WL  G +    +  ++ +     G
Sbjct: 197 YLHIIEEARKRDHRKLGSELKLFT-FDEQIGGGLPIWLSNGTRLRSKLEQMLYKIHRLRG 255

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L  A+ W  SG Y +Y + M    + +++     P +      I+++ ++SY
Sbjct: 256 YEPVRGPELLKAEAWKISGHYANYKENM-YFTNIDEQEYGIKPMNCVGHIKIYQNDVRSY 314

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++       
Sbjct: 315 RDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILDFV--- 370

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                            +      E+ +   T   +    +   +    +     D+   
Sbjct: 371 ---------------ASLMKIFDFEYEMEISTRPEKAIGDEAIWEVATKALKEALDEQGL 415

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     ++    F    +++L  +     
Sbjct: 416 KYGIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPERFALEYT---TS 465

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + K+  V +    +G+      ++            +         + I    +V    
Sbjct: 466 ENTKERPVMLHRAILGSFERFIGILTEH------CAGEFPFFIAPIQVGIVPISEVHLAY 519

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + I   L ++G D    D  E +  +   A+    P+ +++G + +S+  V ++ R   
Sbjct: 520 AKGIQRTLLEMGVDSEIYDKNESLSKKIRNAEKQKLPMILVIGDEELSNRAVALRDRRAK 579

Query: 425 IREDMSLEEVINYASHRFSN 444
            ++ +SL+E +N    + + 
Sbjct: 580 EQKSLSLDEFMNLIKEKINE 599


>gi|302411110|ref|XP_003003388.1| prolyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
 gi|261357293|gb|EEY19721.1| prolyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
          Length = 474

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 123/434 (28%), Positives = 205/434 (47%), Gaps = 33/434 (7%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           H  ++R G++ Q   GI+  LP+G +    + ++I +     GA  +++ ++ S  LW +
Sbjct: 57  HDKLIRAGLLRQSHSGIFHLLPMGYRIQSKLESLIDKYMQSLGASRVALSSITSKKLWQQ 116

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           SGRY+  G E+    DR     +  PTHEE +T +    +KSY+ LP   YQ   K+RDE
Sbjct: 117 SGRYEKLGSELFNFQDRRGADYMLAPTHEEEVTSLVAQSVKSYKELPLRLYQTTRKYRDE 176

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           LRPR G++R+REF MKD Y+FD+    +  +Y ++  +Y   F  LGL  +  RA SG +
Sbjct: 177 LRPRHGLLRTREFTMKDLYTFDVDTSAAIQTYEQVQGAYASFFGSLGLPVVKARAGSGDM 236

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           GGDLSHE+   +  GE  +    +  +F + S+                  A   A    
Sbjct: 237 GGDLSHEYHFTSPIGEDLIMKCNNC-EFAVNSD-----------------IAEQPANDSA 278

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF--------------KGADGK 308
            + +               +EVGH F+ GT+YS P+ A                  A   
Sbjct: 279 MDAQHCPKCEAGTLEVKEALEVGHTFHLGTRYSEPLGARIALPTTSQGDSQSADTSAARA 338

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
             ++QMG +GIG  R++ AV E   D  G+ WP +++P+++ ++     +       + +
Sbjct: 339 STHIQMGCHGIGVSRLIGAVAEHFADPVGLQWPRAISPYEVEIVFADGLEAQAVQIYDDV 398

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L     DV  DD    +  +   ADL G+P+ V++G  +     +E++ R  GI+E 
Sbjct: 399 VHGL-SHTTDVLLDDRPVSLPWKLKDADLTGYPIVVVLGQVWKKTGNIELQCRRLGIKET 457

Query: 429 MSLEEVINYASHRF 442
           +   +++   S   
Sbjct: 458 VQPSDILQRISELL 471


>gi|299823039|ref|ZP_07054925.1| proline--tRNA ligase [Listeria grayi DSM 20601]
 gi|299816568|gb|EFI83806.1| proline--tRNA ligase [Listeria grayi DSM 20601]
          Length = 566

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 153/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DAE+ +H+L+LR G I Q + G+YS+LPL    L N+  IIREE
Sbjct: 1   MRQSMTFIPTLKEVPADAEVKNHQLLLRAGFIRQTASGVYSYLPLATLTLRNIERIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P LQ A+LW ESGR+  YG E++RL DRN++    GPTHEEV+T + R 
Sbjct: 61  LNKVGASEILMPALQPAELWEESGRWADYGPELMRLKDRNNRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 EIKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHADLESLDKTYQDMYTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL    + A+SG IGG  + EF+ L+  GE  +  S    D+    E
Sbjct: 181 YSNIFTRCGLDFRAVIADSGSIGGKETKEFMALSAIGEDTIAYSDT-SDYAANIE 234



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 102/180 (56%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   +  D  P+ + V     GIEVGHIF  GTKYS  M A F   +G+ + + MG YG
Sbjct: 383 DLRMIQEGDLSPDGEGVIRFAEGIEVGHIFKLGTKYSDAMKANFLDENGRANPIIMGCYG 442

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  RV++A+ E + D  G++W   ++PF + LI +   ++      E++Y  L + G  
Sbjct: 443 IGVSRVLSAIAEQNADENGLVWDREISPFDLHLIPVNMKNEEQASFAEELYVSLQESGFT 502

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V +DD  E+ G +FA ADL+G P+++ VG K   +  VE+K R TG   ++  EE++N  
Sbjct: 503 VLFDDRAERAGVKFADADLIGLPIRITVGKK-ADEGIVEVKIRKTGEMIEVKKEELLNTL 561


>gi|238926724|ref|ZP_04658484.1| proline--tRNA ligase [Selenomonas flueggei ATCC 43531]
 gi|238885256|gb|EEQ48894.1| proline--tRNA ligase [Selenomonas flueggei ATCC 43531]
          Length = 570

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 117/286 (40%), Positives = 165/286 (57%), Gaps = 2/286 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +  + P L+  P +AEIASH+LM R G+I + + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MRATNLYAPTLRNTPAEAEIASHQLMYRAGLIRKSAGGMYTYLPLAWRTIRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P LQ ++LW ESGR+ +YG EM+R+ DR+ +    GPTHEE++T + R 
Sbjct: 61  MDAAGGQEIMMPILQPSELWEESGRWGAYGAEMIRVKDRHGREFCMGPTHEEMITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFGVMRSREF+MKD YSFD    G   SY KM V+
Sbjct: 121 EVRSYKQLPLMLYQIQDKFRDERRPRFGVMRSREFIMKDLYSFDKDIAGMNESYRKMSVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP--IPSENTD 238
           Y  IF R GL    + A+SG IGG  S EF VLA  GE+++ C            +    
Sbjct: 181 YTNIFTRCGLNFRAVEADSGAIGGGHSEEFTVLAPEGESRIACCDACSYAASDEKAALRP 240

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            +        + +   P+ +T  +  E L   + +  +  A   E 
Sbjct: 241 INAPDEAELPLAKVATPHTSTIALLAEYLKIPVEKTIKAVAYQTED 286



 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 64/188 (34%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            +D+   +  D+ P          RGIE G IF  GTKYS  M ATF    GK   +QMG
Sbjct: 381 VADIRLVEEGDACPVCENGHLHIGRGIEAGQIFALGTKYSKAMGATFLDEAGKTQPLQMG 440

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R +AA IE +HD  GIIWP ++AP+++ ++ + A  +      E++Y  L   
Sbjct: 441 CYGIGVGRTMAAAIEQNHDEHGIIWPRAIAPYEVVVVAVNAKAEEQLAYAEEVYEELRAA 500

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G +F   DL+G+P+++ +G K + +  +E+K R +G   + + +  +
Sbjct: 501 GVDVLLDDRRERAGVKFNDCDLIGYPVRIAIGPKTIENGTIEVKIRKSGALVNFARDTYL 560

Query: 436 NYASHRFS 443
                  +
Sbjct: 561 KGVQDMLA 568


>gi|169823842|ref|YP_001691453.1| prolyl-tRNA synthetase [Finegoldia magna ATCC 29328]
 gi|226701290|sp|B0RZJ0|SYP_FINM2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167830647|dbj|BAG07563.1| prolyl-tRNA synthetase [Finegoldia magna ATCC 29328]
          Length = 576

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 115/240 (47%), Positives = 161/240 (67%), Gaps = 1/240 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K+++P L+E+P+DAEIASHKL+LR GMI + + G+YS+LPLG + +  V  I+REE
Sbjct: 1   MRMNKFYMPTLREDPQDAEIASHKLLLRAGMIRKTAAGLYSYLPLGYRIVRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E+ +P  Q  ++W ESGR+ ++G EM +L DRN++    GPT EE  TD+ + 
Sbjct: 61  MDNYGSQEIHMPITQPREIWEESGRWKTFGPEMFKLKDRNNREFCLGPTAEEYFTDLVKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFG+ RSREFLM+DAY+FD+  E    +Y  M+ +
Sbjct: 121 EIKSYKQLPLNIYQIQTKYRDEKRPRFGINRSREFLMQDAYTFDVNEEAMGEAYMNMWRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F+RLGL+   +  +SG +GG+ SHEFI L+D GE  V C  D  DF    E     
Sbjct: 181 YEVVFNRLGLEYKIVAGDSGAMGGNSSHEFIALSDVGEG-VICYSDDSDFAATDEKAYVY 239



 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/199 (35%), Positives = 103/199 (51%), Gaps = 1/199 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +  + +         +  E   D   ++     RGIEVG+IF  G KYS  M+ATF   +
Sbjct: 370 NYGDDFEGEIVEDLLMVQEGDIDPETKSPLKFKRGIEVGNIFQLGQKYSKSMNATFLDEN 429

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK+ +  MGSYGIG  R V+A++E +HD KG+IWP  VAP+ + +  +   D+      E
Sbjct: 430 GKEQFFWMGSYGIGVTRSVSAIVEQNHDDKGMIWPLVVAPYHVIITIVNTKDEEQNTLAE 489

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+Y +L   G +V  DD  E++G +F   DL+G PL++ VG K   D  VE   R T   
Sbjct: 490 KLYEKLLLQGVEVLLDDRKERVGVKFNDRDLIGIPLRITVGKKAAED-IVEFSERRTLEN 548

Query: 427 EDMSLEEVINYASHRFSNN 445
            +MS  E         ++N
Sbjct: 549 VEMSSTEAYEKVMEIINSN 567


>gi|113475053|ref|YP_721114.1| prolyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
 gi|123161090|sp|Q116D3|SYP_TRIEI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110166101|gb|ABG50641.1| prolyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
          Length = 601

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 119/276 (43%), Positives = 164/276 (59%), Gaps = 7/276 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L+++P +AEI SHKL++R G I +   GIY++LPL  + ++ V+ I+REE
Sbjct: 1   MRLSQMLLVTLRDDPAEAEIPSHKLLIRAGYIRRIGNGIYAYLPLMLRVINKVSTIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ A+LW ESGR+D+Y +    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNATGAQECLLPQLQPAELWQESGRWDTYTQAEGIMFSLIDRQNRELGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKD YSF    E  K +Y  M
Sbjct: 121 AKDIIRSYRQLPIHLYQLQTKFRDEIRPRFGLMRGREFIMKDGYSFHADEESLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  +  R GL+   + A+SG IGG  S EF+VLAD GE ++  ++D   +    E  
Sbjct: 181 DKAYRNMLRRSGLQFRAVDADSGAIGGSASQEFMVLADAGEDEILYTQDG-KYAANMEKA 239

Query: 238 ---DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                D   S     ++   P   T +   E L  S
Sbjct: 240 ISLPVDVEASPFDTYDKLETPGTETIEKMCEFLHCS 275



 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 102/200 (51%), Gaps = 3/200 (1%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSL--PENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +  +++  P         +K   ++  P     +ARGIEVGHIF  GTKYS  M AT+  
Sbjct: 400 NWGQEFALPKLVVDVRKAKKGDRAVHDPSKTLETARGIEVGHIFQLGTKYSEAMGATYTN 459

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G++  + MG YG+G  R+  A +E S+D  GIIWP ++AP+ + +      D    + 
Sbjct: 460 EQGQEVPLLMGCYGVGVSRLAQAAVEQSYDKDGIIWPVAIAPYHVVICIPNIKDTQQIEV 519

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +Y  L++ G D   DD  E+ G +F  ADL+G P +++ G + +   KVE+  R T 
Sbjct: 520 AGNLYKELNEAGIDTILDDRDERAGVKFKDADLIGIPYRIVTG-RSLKSGKVELIERSTH 578

Query: 425 IREDMSLEEVINYASHRFSN 444
             +++ + +V++        
Sbjct: 579 QCQEIVVAQVLSTLKDLIEK 598


>gi|303234780|ref|ZP_07321406.1| proline--tRNA ligase [Finegoldia magna BVS033A4]
 gi|302494121|gb|EFL53901.1| proline--tRNA ligase [Finegoldia magna BVS033A4]
          Length = 576

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 115/240 (47%), Positives = 161/240 (67%), Gaps = 1/240 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K+++P L+E+P+DAEIASHKL+LR GMI + + G+YS+LPLG + +  V  I+REE
Sbjct: 1   MRMNKFYMPTLREDPQDAEIASHKLLLRAGMIRKTAAGLYSYLPLGYRIVRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E+ +P  Q  ++W ESGR+ ++G EM +L DRN++    GPT EE  TD+ + 
Sbjct: 61  MDNYGSQEIHMPVTQPREIWEESGRWKTFGPEMFKLKDRNNREFCLGPTAEEYFTDLVKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFG+ RSREFLM+DAY+FD+  E    +Y  M+ +
Sbjct: 121 EIKSYKQLPLNIYQIQTKYRDEKRPRFGINRSREFLMQDAYTFDVNEEAMGEAYMNMWRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F+RLGL+   +  +SG +GG+ SHEFI L+D GE  V C  D  DF    E     
Sbjct: 181 YEVVFNRLGLEYKIVAGDSGAMGGNSSHEFIALSDVGEG-VICYSDDSDFAATDEKAYVY 239



 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/199 (35%), Positives = 103/199 (51%), Gaps = 1/199 (0%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +  + +         +  E   D   ++     RGIEVG+IF  G KYS  M+ATF   +
Sbjct: 370 NYGDDFEGEIVEDLLMVQEGDIDPETKSPLKFKRGIEVGNIFQLGQKYSKSMNATFLDEN 429

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK+ +  MGSYGIG  R V+A++E +HD KG+IWP  VAP+ + +  +   D+      E
Sbjct: 430 GKEQFFWMGSYGIGVTRSVSAIVEQNHDDKGMIWPLVVAPYHVIITIVNTKDEEQNTLAE 489

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+Y +L   G +V  DD  E++G +F   DL+G PL++ VG K   D  VE   R T   
Sbjct: 490 KLYEKLLLQGVEVLLDDRKERVGVKFNDRDLIGIPLRITVGKKAAED-IVEFSERRTLEN 548

Query: 427 EDMSLEEVINYASHRFSNN 445
            +MS  E         ++N
Sbjct: 549 VEMSSTEAYEKVMEIINSN 567


>gi|89071308|ref|ZP_01158467.1| threonyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
 gi|89043173|gb|EAR49409.1| threonyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
          Length = 654

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 139/445 (31%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L  L+E   RD      ++ L    +   + G   W P G      +   +R +Q  
Sbjct: 238 KAHLHRLEEAQKRDHRKLGREMDLF--HMQAEAPGQVFWHPNGWTVYTTLQDYMRRKQRA 295

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-----GPTHEEVMTDIF 118
            G  E++ P +    LW  SG +D Y   M  +    + A         P +      +F
Sbjct: 296 GGYREINTPQVVDRKLWEASGHWDKYQDHMFIVEVDEEHAQEKAINALKPMNCPCHVQVF 355

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   DA+ F  T +  +    + 
Sbjct: 356 NQGLKSYRDLPLRLAEFGSCSRYEPSGALHGIMRVRGFTQDDAHIFC-TEDQIEAECARF 414

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 I+  LG  +  ++  + P                      S    D    +  +
Sbjct: 415 INFLAGIYEDLGFPTFEIKFATRPEKR-----------------VGSDASWDHVENALES 457

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                    ++     A Y    D +   L D++    +     ++       G      
Sbjct: 458 AIRATGRTYTLEPGDGAFYGPKLDFY---LTDAIGRTWQCGTFQVDPNLPERLG------ 508

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             AT+ G DG  H    +    +G+      ++   H GK   W         S++    
Sbjct: 509 --ATYIGEDGAKHRPYMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIV---- 562

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     ++   L   G     D   E+I  +     +   P+ +  G + V +  V
Sbjct: 563 --SDADGYVHEVVDALQAAGVRAEADTRNEKINFKVREHSVGKVPVILACGGREVEERTV 620

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++           L+ ++   S  
Sbjct: 621 SVRRLGDKATRTAGLDALVGELSAE 645


>gi|306818771|ref|ZP_07452493.1| threonine--tRNA ligase [Mobiluncus mulieris ATCC 35239]
 gi|304648457|gb|EFM45760.1| threonine--tRNA ligase [Mobiluncus mulieris ATCC 35239]
          Length = 692

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 65/456 (14%), Positives = 138/456 (30%), Gaps = 48/456 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K ++  L+E   RD      +L L +    +   G+  + P G      +    R+    
Sbjct: 269 KAYVTRLEEAEKRDHRRLGTELDLFS-FPEEIGSGLPVFHPKGALVRMEMENYSRQRHLE 327

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
            G   +S P +    L+  SG    Y + M                 +        P + 
Sbjct: 328 EGYSFVSTPHVTKGQLFETSGHLSWYKEGMFPAMHLDEERDAQGNVTKEGADYYLKPMNC 387

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R+R F   D++ +    +  
Sbjct: 388 PMHNLIFKSRTRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDSHIYCTRDQMK 447

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 448 DELTK-LLTFVLDLLKDYGLDDFYLELST----------------KNPQKFVGSDEVWEE 490

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +     +          +  A Y       + +  D++    ++S   ++    F  
Sbjct: 491 ATRTLQEVAEASGLELRPDPEGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FNL 543

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++ L  +A       +   V +     G++     V+   + G    W          
Sbjct: 544 PERFELEYTAA---DGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAW------LAPV 594

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            + +          CE +  +L      V  D+  ++ G +   A     P  +IVG + 
Sbjct: 595 QVRLVPVADTFNAYCEDVAKQLRAENVRVEIDESDDRFGKKIRNAAKDKVPFTLIVGGED 654

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
                V  ++R    +  + +   I   +    + +
Sbjct: 655 AEHGAVSFRYRGGEQKNGVKISAAIQEITETIRSRK 690


>gi|160894708|ref|ZP_02075483.1| hypothetical protein CLOL250_02259 [Clostridium sp. L2-50]
 gi|156863642|gb|EDO57073.1| hypothetical protein CLOL250_02259 [Clostridium sp. L2-50]
          Length = 591

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 150/434 (34%), Gaps = 33/434 (7%)

Query: 16  RDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD      ++ L   M      +G+  +LP G      +   I+ ++ + G   +  P +
Sbjct: 181 RDHRKIGKEMNLF--MSDDLVGRGLPMFLPKGYIVWQELENYIKNKERKLGYRHVMTPCV 238

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            + +L+  SG +D Y   M    +   ++ +  P +      I+ + + SY++LP    +
Sbjct: 239 GTVNLYKTSGHWDHYKDNMFPAMEVEGESFVLRPMNCPHHMMIYANKMHSYKDLPIRIGE 298

Query: 135 IQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           I   FR E      G+ R R F   DA+   +TPE  +  + ++       +    +   
Sbjct: 299 IAHDFRFEASGTLKGIERGRHFCQNDAH-LFVTPEQIESEFKQVVDLIFDTYKDFNITDY 357

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                          + +   D  E          +    +     DDI    +      
Sbjct: 358 RCVLSLRD-----PEDKVKYHDDDEM--------WNTAEDALRKVLDDIGIEYTEEIGEA 404

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           A Y    DV    +  ++     +S   ++    F    K+    + T+   DG      
Sbjct: 405 AFYGPKLDV---NVKPAIGNEYTLSTCQLD----FCLPAKF----NLTYIDKDGTKKTPV 453

Query: 314 M-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           +     +G++    A I    +      P  +AP +  ++ +K  D+       ++Y  L
Sbjct: 454 VLHRAILGSLDRFMAYIL---EETKGNLPLWLAPVQARILPVKNEDEELNAYAHELYDFL 510

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                 V  D+  E++G +   A +   P  +I+G   V+D  V  +         + ++
Sbjct: 511 DDNNIRVEIDERAEKLGYRVRAAQVEKVPYLIILGKNEVNDKTVSYRLHGEQKTTTVPMD 570

Query: 433 EVINYASHRFSNNR 446
           E +          +
Sbjct: 571 EFLAMLQDEIKTKK 584


>gi|328876049|gb|EGG24413.1| threonyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 786

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 151/440 (34%), Gaps = 41/440 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      +  L     H +S G   +LP G K  + + + +R E  R G  E+  P + S
Sbjct: 378 DHRNIGREQELF--FFHPYSPGSCFFLPHGAKVYNKLLSFLRGEYRRRGYQEVITPNIYS 435

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             LW  SG + +Y   M      +       P +      ++   ++SY+ LP  +    
Sbjct: 436 QKLWEVSGHWQNYKDNMFSFQ-CDHTTYSLKPMNCPGHCLMYAHRVRSYKELPMRYADFG 494

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           +  R+E      G+ R R F   DA+ F  T +  +     +   +L+  +R+   +  +
Sbjct: 495 VLHRNETHGSLTGLTRVRRFQQDDAHIFCRTDQIEEEMRACL--DFLQYVYRVFGFTFSL 552

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD-IISLNSIVEQWTA 254
              + P  G                     D  +    +     ++       + E   A
Sbjct: 553 ELSTRPKEG----------------YLGDLDTWNRAENALEQVLNESFRGHWRLNEGDGA 596

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-----ADGKD 309
            Y    D+H   + D+   + + +   ++      F  +++    A             +
Sbjct: 597 FYGPKIDIH---IKDANGRSHQCATIQLDFQLPQRFNLEFTTSGVAETDDPSALAPSKFE 653

Query: 310 HYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
             V +     G   R++A +IE +                              +  EKI
Sbjct: 654 RPVMIHRAIFGSTERMLAILIEHTKGKWPFWLSPRQVLVTSIG-------DAHNEYAEKI 706

Query: 369 YARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR- 426
              L   G +V  D    + I  +   A +L +   ++VG++ V+++ V ++ R      
Sbjct: 707 RQDLHLAGYEVDIDTSAHKTIKKKLRDAIILKYNYVIVVGNEEVTNNTVSVRRRDGDSTP 766

Query: 427 EDMSLEEVINYASHRFSNNR 446
           + MSL  +++    +  N +
Sbjct: 767 QSMSLSSLLDELQIKTDNYQ 786


>gi|295093898|emb|CBK82989.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Coprococcus sp.
           ART55/1]
          Length = 587

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 69/435 (15%), Positives = 147/435 (33%), Gaps = 33/435 (7%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
              RD       + L   M+     +G+  +LP G      +   I+ ++ + G + +  
Sbjct: 179 AKERDHRKIGKDMQLF--MVDDLVGRGLPMFLPKGYTVWQELENYIKRKERKLGYLHVMT 236

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + + +L+  SG +D Y   M    +   ++ +  P +      I+ + + SY++LP  
Sbjct: 237 PCVGTVNLYKTSGHWDHYKDNMFPAMEMEGESFVLRPMNCPHHMMIYANKMHSYKDLPIR 296

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             +I   FR E      G+ R R F   D++ F  TP+  +  +  +       +   G+
Sbjct: 297 IAEIAHDFRFEASGTLKGIERGRHFCQNDSHIFV-TPDQIEEEFAGVVKLIFDTYKDFGI 355

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                             + +   D  E          +    +     DDI    +   
Sbjct: 356 TDYRCVLSLRD-----PEDKVKYHDDDEM--------WNKAENALRKVLDDIGIDYTEEI 402

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    DV    +  ++     +S   ++    F    K+       +   DG+  
Sbjct: 403 GEAAFYGPKLDV---NVKPAVGNEYTLSTCQLD----FCLPAKFD----LKYIDKDGEKK 451

Query: 311 YVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              +     +G++    A I    +      P  +AP ++ ++ +K  ++       K+ 
Sbjct: 452 TPVVLHRAILGSLDRFMAYIL---EETKGNLPTWLAPVQVRVMPVKTDNEDLMAYAHKVV 508

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L  +   V  DD  E++G +     +   P  +++G     +  V  +         +
Sbjct: 509 DALDAIDVRVELDDRAEKLGYRMREGQVQKVPYLLVIGFNEAENGTVSYRLHGEADTTVL 568

Query: 430 SLEEVINYASHRFSN 444
            L+E +         
Sbjct: 569 PLDEFVQRIDTEIKT 583


>gi|163814284|ref|ZP_02205673.1| hypothetical protein COPEUT_00435 [Coprococcus eutactus ATCC 27759]
 gi|158449919|gb|EDP26914.1| hypothetical protein COPEUT_00435 [Coprococcus eutactus ATCC 27759]
          Length = 587

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 69/435 (15%), Positives = 147/435 (33%), Gaps = 33/435 (7%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
              RD       + L   M+     +G+  +LP G      +   I+ ++ + G + +  
Sbjct: 179 AKERDHRKIGKDMQLF--MVDDLVGRGLPMFLPKGYTVWQELENYIKRKERKLGYLHVMT 236

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + + +L+  SG +D Y   M    +   ++ +  P +      I+ + + SY++LP  
Sbjct: 237 PCVGTVNLYKTSGHWDHYKDNMFPAMEMEGESFVLRPMNCPHHMMIYANKMHSYKDLPIR 296

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             +I   FR E      G+ R R F   D++ F  TP+  +  +  +       +   G+
Sbjct: 297 IAEIAHDFRFEASGTLKGIERGRHFCQNDSHIFV-TPDQIEEEFAGVVKLIFDTYKDFGI 355

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                             + +   D  E          +    +     DDI    +   
Sbjct: 356 TDYRCVLSLRD-----PEDKVKYHDDDEM--------WNKAENALRRVLDDIGIDYTEEI 402

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    DV    +  ++     +S   ++    F    K+       +   DG+  
Sbjct: 403 GEAAFYGPKLDV---NVKPAVGNEYTLSTCQLD----FCLPAKFD----LKYIDKDGEKK 451

Query: 311 YVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              +     +G++    A I    +      P  +AP ++ ++ +K  ++       K+ 
Sbjct: 452 TPVVLHRAILGSLDRFMAYIL---EETKGNLPTWLAPVQVRVMPVKTDNEDLMAYAHKVV 508

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L  +   V  DD  E++G +     +   P  +++G     +  V  +         +
Sbjct: 509 DALDAIDVRVELDDRAEKLGYRMREGQVQKVPYLLVIGFNEAENGTVSYRLHGEADTTVL 568

Query: 430 SLEEVINYASHRFSN 444
            L+E +         
Sbjct: 569 PLDEFVQKIDTEIKT 583


>gi|297748711|gb|ADI51257.1| Threonyl-tRNA synthetase [Chlamydia trachomatis D-EC]
 gi|297749591|gb|ADI52269.1| Threonyl-tRNA synthetase [Chlamydia trachomatis D-LC]
          Length = 660

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 140/445 (31%), Gaps = 42/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD  +   KL L +      S G+  + P G    + +    +    
Sbjct: 248 LKEHLHQLEEAKKRDHRVLGTKLDLFSQ--QTCSAGMPFFHPRGMVVWNALVDYWKRLHQ 305

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  ++  P L + +LW  SG +++Y + M  L   +++     P +       +++ +
Sbjct: 306 RAGYQQIQTPQLMNRELWEISGHWENYKENMYTLT-VDEEDYAIKPMNCPGCMLYYKTQL 364

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR  P    +I    R EL     G+MR R F   DA+   LTPE  +     +    
Sbjct: 365 HSYREFPLRIAEIGHVHRHELSGALSGLMRVRTFHQDDAH-VFLTPEQVEEETLNILNLV 423

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   GL+   +   + P                E     S D  +    +       
Sbjct: 424 SELYGTFGLEY-HLELSTRP----------------EQGTIGSDDLWELATKALKRALVK 466

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I     A Y    D+H           K    R  + G I              
Sbjct: 467 SQKPFIISPGEGAFYGPKIDIHV----------KDAINRTWQCGTI-QLDMFLPERFDLK 515

Query: 302 FKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +  A G+     M    +     R +  +IE       +                     
Sbjct: 516 YTNAQGEKSTPIMLHRALFGSIERFLGILIEHFKGRFPLWLSPEHVRIITVA-------D 568

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +++    S++G  V  D   E +  +   A  +     + +G K +    + ++
Sbjct: 569 RHEARAQELAKHFSQMGIIVSVDSSNESVSKKIRNAQNMQVNYMITIGDKELETHLLAVR 628

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R   +  D+++E+  +       +
Sbjct: 629 TRDNRVLNDIAVEQFSHVILEELRS 653


>gi|302518003|ref|ZP_07270345.1| threonyl-tRNA synthetase [Streptomyces sp. SPB78]
 gi|302426898|gb|EFK98713.1| threonyl-tRNA synthetase [Streptomyces sp. SPB78]
          Length = 658

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 134/439 (30%), Gaps = 36/439 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     ++L L +    +   G+  + P G      +    R      G   +  
Sbjct: 254 EAEKRDHRKLGNELDLFS-FPEEVGPGLAVFHPKGGIIRRAMEDYSRRRHEEEGYEFVYS 312

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+ +SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 313 PHTTKGALFQKSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 372

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ RSR F   DA+ +    + ++   +K     L +    G
Sbjct: 373 RLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIYCTKEQMAEEL-DKTLTFVLNLLRDYG 431

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +                  E +   S +  +    +     +         
Sbjct: 432 LDDFYLELST----------------KDEKKFVGSDEVWEEATATLQQVAEKQGLPLVPD 475

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++    F    ++ L  +A       + 
Sbjct: 476 PGGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLPERFDLSYTAA---DGSRQ 525

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +     G++    AV+    +      P  +AP +   I +           ++  
Sbjct: 526 RPVMIHRALFGSIERFFAVLL---EHYAGAMPPWLAPVQAVGIPVG---DAHVPYLKEFA 579

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A   + G  V  D   +++  +         P  VIVG   ++   V  +HR       +
Sbjct: 580 AEARRKGLRVDVDASSDRMQKKIRNHQKQKTPFMVIVGDDDMNAGTVSFRHRDGSQENGI 639

Query: 430 SLEEVINYASHRFSNNRPV 448
             +E I            V
Sbjct: 640 PKDEAIAKLLDVVERRVQV 658


>gi|188587611|ref|YP_001919651.1| prolyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|226699131|sp|B2UY89|SYP_CLOBA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|188497892|gb|ACD51028.1| prolyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
          Length = 570

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 122/237 (51%), Positives = 159/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR+GMI + + GIY+++PLG KAL  V  IIREE
Sbjct: 1   MKMSNMLISTLREVPAEAEIDSHKLMLRSGMIRKMASGIYNYMPLGLKALKKVEDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     +  A+LW  SGR+D+YG EM R+ DRN++    GPTHEEV TDI ++
Sbjct: 61  MNEAGAQEFLASAMIPAELWQSSGRWDAYGAEMFRVKDRNERDFCLGPTHEEVFTDIAKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   +G   SYNKM+ +
Sbjct: 121 EIKSYKQLPVNLYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDKDQQGLDLSYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y++IF+R GL +  + A+SG IGG  S EF+V ++ GE  +    +  D+    E  
Sbjct: 181 YVKIFNRCGLDAKCVEADSGAIGGSNSAEFMVKSEVGEDDIVFCTEC-DYAANIEKA 236



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 105/211 (49%), Gaps = 4/211 (1%)

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--PENKRVSARGIEVGHIFYFGTKY 294
           T  ++       V           D  N    ++      K   +RG EVGHIF  GTKY
Sbjct: 357 TGANETGYHIKNVNYGRDFEGIIGDYRNVVEGEACSICGGKLTISRGTEVGHIFKLGTKY 416

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           S  M A F   +GK+    MG YGIG  R +A++IE  +D  GI+WP +VAP+ +S+I +
Sbjct: 417 SEAMDAKFIAENGKEAPFIMGCYGIGVTRTMASIIEQHNDESGIVWPLAVAPYHVSVIAV 476

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              D+       K+Y  L  +G +   DD  E+ G +F  ++++G P+++ VG K + D 
Sbjct: 477 NVKDEEQVKIATKLYEDLKSIGVEALLDDRNERAGVKFKDSEIMGIPMRITVGKK-IVDG 535

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +VE K R TG  E + +E+V       F  N
Sbjct: 536 EVEFKLR-TGDMEVVKIEDVCQIVKGEFDKN 565


>gi|15605310|ref|NP_220096.1| threonyl-tRNA synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789318|ref|YP_328404.1| threonyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|237803010|ref|YP_002888204.1| threonyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804932|ref|YP_002889086.1| threonyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311401|ref|ZP_05353971.1| threonyl-tRNA synthetase [Chlamydia trachomatis 6276]
 gi|255317702|ref|ZP_05358948.1| threonyl-tRNA synthetase [Chlamydia trachomatis 6276s]
 gi|255348963|ref|ZP_05380970.1| threonyl-tRNA synthetase [Chlamydia trachomatis 70]
 gi|255503502|ref|ZP_05381892.1| threonyl-tRNA synthetase [Chlamydia trachomatis 70s]
 gi|7388284|sp|O84585|SYT_CHLTR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123731247|sp|Q3KLB6|SYT_CHLTA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|6578108|gb|AAC68183.2| Threonyl tRNA Synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167848|gb|AAX50856.1| threonyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|231273232|emb|CAX10145.1| threonyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274244|emb|CAX11038.1| threonyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|296436115|gb|ADH18289.1| threonyl-tRNA synthetase [Chlamydia trachomatis G/9768]
 gi|296437044|gb|ADH19214.1| threonyl-tRNA synthetase [Chlamydia trachomatis G/11222]
 gi|296437975|gb|ADH20136.1| threonyl-tRNA synthetase [Chlamydia trachomatis G/11074]
 gi|297140477|gb|ADH97235.1| threonyl-tRNA synthetase [Chlamydia trachomatis G/9301]
          Length = 635

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 140/445 (31%), Gaps = 42/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD  +   KL L +      S G+  + P G    + +    +    
Sbjct: 223 LKEHLHQLEEAKKRDHRVLGTKLDLFSQ--QTCSAGMPFFHPRGMVVWNALVDYWKRLHQ 280

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  ++  P L + +LW  SG +++Y + M  L   +++     P +       +++ +
Sbjct: 281 RAGYQQIQTPQLMNRELWEISGHWENYKENMYTLT-VDEEDYAIKPMNCPGCMLYYKTQL 339

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR  P    +I    R EL     G+MR R F   DA+   LTPE  +     +    
Sbjct: 340 HSYREFPLRIAEIGHVHRHELSGALSGLMRVRTFHQDDAH-VFLTPEQVEEETLNILNLV 398

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   GL+   +   + P                E     S D  +    +       
Sbjct: 399 SELYGTFGLEY-HLELSTRP----------------EQGTIGSDDLWELATKALKRALVK 441

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I     A Y    D+H           K    R  + G I              
Sbjct: 442 SQKPFIISPGEGAFYGPKIDIHV----------KDAINRTWQCGTI-QLDMFLPERFDLK 490

Query: 302 FKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +  A G+     M    +     R +  +IE       +                     
Sbjct: 491 YTNAQGEKSTPIMLHRALFGSIERFLGILIEHFKGRFPLWLSPEHVRIITVA-------D 543

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +++    S++G  V  D   E +  +   A  +     + +G K +    + ++
Sbjct: 544 RHEARAQELAKHFSQMGIIVSVDSSNESVSKKIRNAQNMQVNYMITIGDKELETHLLAVR 603

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R   +  D+++E+  +       +
Sbjct: 604 TRDNRVLNDIAVEQFSHVILEELRS 628


>gi|330685674|gb|EGG97315.1| proline--tRNA ligase [Staphylococcus epidermidis VCU121]
          Length = 567

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 198/371 (53%), Gaps = 6/371 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MEKVDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKRLPLTLFQIQSKFRDEQRPRFGLLRGREFIMKDAYSFHADEASLDETYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+G+ + P+ A+SG IGG+ +HEF+ L++ GE  +    +  D+    E  +  
Sbjct: 181 YDRIFKRVGINARPVVADSGAIGGNHTHEFMALSEIGEDTIVY-SNESDYAANIEKAEVV 239

Query: 241 DIISLNSI----VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              +  +     +++   P   T++   + L   L E  +     ++   I      +  
Sbjct: 240 YTANPKNTEVAELKKIETPNIKTAEEVAKYLKRPLDEIVKTMICKVDGEFIMVLIRGHHE 299

Query: 297 PMSATFKGADGKDHYVQMGS-YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                 K   G D          I  +      +   HD    I+ D+      + +   
Sbjct: 300 LNDVKLKAYFGTDQIEMANQDEIINIVGAHPGSLGPIHDKDIKIYADNFVQDLNNFVIGA 359

Query: 356 AHDQVCRDACE 366
             D    +  +
Sbjct: 360 NEDGYHFENAQ 370



 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/161 (41%), Positives = 97/161 (60%), Gaps = 2/161 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E  HD  GIIW
Sbjct: 404 GIEVGQVFKLGTKYSETMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQHHDDNGIIW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI I    +  R+   ++Y +L     DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLITINPKKEDQRELGNQLYDQLM-NNYDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           P++V+VG +   +  VE+K R TG  E++ ++++ NY +  
Sbjct: 523 PIRVVVGKR-AEEGIVEVKQRSTGESEEIHIDDLENYINDL 562


>gi|328553230|gb|AEB23722.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
          Length = 638

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 154/441 (34%), Gaps = 41/441 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
             +L+E   R+      +L L   M  + + G+  +LP GQ   + + + +R +Q+    
Sbjct: 234 FQLLKEAEKRNHRKLGAELQLF--MFSEEAPGMPFYLPNGQFIRNTLESFLRSKQDAYHY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG +D Y + M   ++ + +     P +      IF+  ++SYR
Sbjct: 292 QEVRTPMMMNQRLWEQSGHWDHYKENM-YFSEADQQRFALKPMNCPGHMLIFKERLRSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    +     R E      G++R R F   DA+ F  TP+  +            ++
Sbjct: 351 ELPIRMAEFGQVHRHEFSGALNGLLRVRSFCQDDAHIFV-TPDQIESEIASALQLIHEVY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G         + P                      S+   D    +      +    
Sbjct: 410 TAFGFSYDI-ELSTRP-----------------EDYMGSERLWDRAESALERVLKEQGYD 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                   A Y    D+H   + D+L  + + +   ++    F    K+      T+   
Sbjct: 452 FRFNRGDGAFYGPKIDIH---IKDALNRSHQCATVQLD----FQMPEKFD----LTYIDE 500

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +     G++     +I   + G   +W        +    I   + V RD 
Sbjct: 501 KNQKVRPVVIHRAVFGSLDRFLGIITEHYGGAFPLWLA-----PVQAKIIPVSNTVHRDC 555

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E+++ ++ K G     D   E++G +   A +   P   +VG +      V ++     
Sbjct: 556 AEQVHRQMKKAGIRAELDQRDEKLGYKIREAQIKKIPYIAVVGDQECRHHTVHVRQYGQE 615

Query: 425 IREDMSLEEVINYASHRFSNN 445
              + ++ + ++   +  +  
Sbjct: 616 DTFEENVSDFVSRIINETNKR 636


>gi|170288224|ref|YP_001738462.1| prolyl-tRNA synthetase [Thermotoga sp. RQ2]
 gi|226701351|sp|B1L8Y1|SYP_THESQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|170175727|gb|ACB08779.1| prolyl-tRNA synthetase [Thermotoga sp. RQ2]
          Length = 577

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 114/273 (41%), Positives = 162/273 (59%), Gaps = 1/273 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    + P L+E P D E  SH+ +LR G I + + GIY++LPLG++ L  +  I+REE
Sbjct: 1   MRMKDLYAPTLKETPSDVETVSHEYLLRGGFIRKTAAGIYTYLPLGRRVLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+ +P LQ A+LW +SGR+D YG EM++L DR+++    GPTHEE++TD+ ++
Sbjct: 61  MNRIGAQEILMPILQPAELWKQSGRWDDYGPEMMKLKDRHERDFTLGPTHEEIVTDLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQ+  K+RDE+RPRFG++R+REF+MKDAYSF  + E    +Y     +
Sbjct: 121 ELRSYRQLPLVVYQVANKYRDEIRPRFGLLRAREFIMKDAYSFHSSWESLDETYELFKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDF 239
           Y RI  RLG+K + + AE+G IGG+ SHEF+V A  GET V FC K              
Sbjct: 181 YSRIMERLGVKYMVIEAETGAIGGNASHEFVVPAKIGETNVLFCEKCGYQASDEKAEYKG 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +              P      +     F  +P
Sbjct: 241 EYTQEQEEEKPFKKVPTPGVKTIEEVSEFLGVP 273



 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 64/196 (32%), Positives = 98/196 (50%), Gaps = 7/196 (3%)

Query: 258 ATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+      D  P       + +GIE+GHIF  GTKYS  M A F   +G+     MG
Sbjct: 378 EWYDLRTMVEGDPCPVCGEPLKATKGIELGHIFKLGTKYSEAMKAYFMDENGEMKPFIMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG G  R +AAV+E  HD  G+IWP S+AP+ + +  +  +D   +   EKIY  LS+ 
Sbjct: 438 CYGWGVSRTMAAVVEHFHDENGMIWPLSIAPYTVVVDILNMNDAEQKQVGEKIYQVLSEK 497

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-- 433
           G +V  DD     G +F  ADL+GFP+++ VG + + +  VE+K R +     ++++   
Sbjct: 498 GEEVVLDDREVSPGFKFKDADLIGFPIRINVG-RSLKEGVVELKKRYSKELVKVNIKNGF 556

Query: 434 --VINYASHRFSNNRP 447
             ++           P
Sbjct: 557 GTLLETLEKMKREYDP 572


>gi|15618715|ref|NP_225001.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae CWL029]
 gi|15836339|ref|NP_300863.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|16752234|ref|NP_445602.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|33242166|ref|NP_877107.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
 gi|8928382|sp|Q9Z7A0|SYT_CHLPN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|4377117|gb|AAD18944.1| Threonyl tRNA Synthetase [Chlamydophila pneumoniae CWL029]
 gi|7189978|gb|AAF38837.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|8979180|dbj|BAA99014.1| threonyl tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|33236677|gb|AAP98764.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
          Length = 635

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 139/439 (31%), Gaps = 42/439 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD  +   KL L +    + S G+  + P G    D +    ++     G  E
Sbjct: 229 QIEEAKKRDHRVLGAKLDLFSQ--QESSPGMPFFHPRGMIVWDALIRYWKQLHTAAGYKE 286

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P L +  LW  SG +D+Y   M  L   +D+     P +       +++ + SY+  
Sbjct: 287 ILTPQLMNRQLWEVSGHWDNYKANMYTLQ-IDDEDYAIKPMNCPGCMLYYKTRLHSYKEF 345

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    ++    R E      G+MR R F   DA+   LTPE  +     +      ++  
Sbjct: 346 PLRVAEVGHVHRQEASGALSGLMRVRAFHQDDAH-VFLTPEQVEEETLNILQLVSTLYGT 404

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            GL+   +   + P                E          +    + N       +   
Sbjct: 405 FGLEY-HLELSTRP----------------EKDTIGDDSLWELATDALNRALVQSGTPFI 447

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           +     A Y    D+H           K    R  + G I              +  A G
Sbjct: 448 VRPGEGAFYGPKIDIHV----------KDAIQRTWQCGTI-QLDMFLPERFELEYTTAQG 496

Query: 308 KDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                 M    +     R +  +IE+      +                           
Sbjct: 497 TKSVPVMLHRALFGSIERFLGILIENFKGRFPLWLSPEQVRIITVA-------DRHIPRA 549

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +++     ++G  V  DD  E +  +   A  +     + +G   ++++ + ++ R   +
Sbjct: 550 KELEEAWKRLGLVVTLDDSSESVSKKIRNAQNMQVNYMITLGDHEINENVLAVRTRDNRV 609

Query: 426 REDMSLEEVINYASHRFSN 444
             D+S+E  +N      ++
Sbjct: 610 INDVSVERFLNTILEEKNS 628


>gi|85705178|ref|ZP_01036278.1| threonyl-tRNA synthetase [Roseovarius sp. 217]
 gi|85670500|gb|EAQ25361.1| threonyl-tRNA synthetase [Roseovarius sp. 217]
          Length = 648

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 142/443 (32%), Gaps = 44/443 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      ++ L    + + + G   W P G      +   +R +Q R G
Sbjct: 236 YLTFLEEAERRDHRKLGREMDLF--HMQEEAPGQVFWHPNGWTVYTTLQDYMRRQQRRGG 293

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFRS 120
            +E++ P +    LW  SG ++ Y + M  +       R        P +      IF  
Sbjct: 294 YVEVNTPQVVDRKLWEASGHWEKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVQIFNQ 353

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R E      G+MR R F   DA+ F  T +  +    +   
Sbjct: 354 GLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIFC-TEDQIESETARFIA 412

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+  LG  +  +   + P     S E                   D    +  +  
Sbjct: 413 FLSGIYADLGFPNFEVLFSTRPDVRAGSDE-----------------VWDKAESALLSAT 455

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   +     A Y    +     L D++    +     ++    F    +    + 
Sbjct: 456 RAAGIEPKVNPGEGAFYGPKLEF---TLTDAIGRKWQCGTHQVD----FVLPER----LD 504

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A + G DG  H    +    +G+      ++   H G+   W         S++      
Sbjct: 505 ANYIGTDGAKHRPVMLHRAVLGSFERFIGILIEEHSGRLPFWLAPRQVVVASIV------ 558

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   K+   L+ +      D   E+I  +     +   P+ +  G + V D  V +
Sbjct: 559 SDADDCVTKVARNLTDLNIRAEADTRNEKINYKVREHSVGKVPVILACGPREVEDGTVSL 618

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +         + L++V    +  
Sbjct: 619 RRLGEKDSRIVPLDQVAAELARE 641


>gi|269302597|gb|ACZ32697.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN]
          Length = 635

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 139/439 (31%), Gaps = 42/439 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD  +   KL L +    + S G+  + P G    D +    ++     G  E
Sbjct: 229 QIEEAKKRDHRVLGAKLDLFSQ--QESSPGMPFFHPRGMIVWDALIRYWKQLHTAAGYKE 286

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P L +  LW  SG +D+Y   M  L   +D+     P +       +++ + SY+  
Sbjct: 287 ILTPQLMNRQLWEVSGHWDNYKANMYTLQ-IDDEDYAIKPMNCPGCMLYYKTRLHSYKEF 345

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +I    R E      G+MR R F   DA+   LTPE  +     +      ++  
Sbjct: 346 PLRVAEIGHVHRQEASGALSGLMRVRAFHQDDAH-VFLTPEQVEEETLNILQLVSTLYGT 404

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            GL+   +   + P                E          +    + N       +   
Sbjct: 405 FGLEY-HLELSTRP----------------EKDTIGDDSLWELATDALNRALVQSGTPFI 447

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           +     A Y    D+H           K    R  + G I              +  A G
Sbjct: 448 VRPGEGAFYGPKIDIHV----------KDAIQRTWQCGTI-QLDMFLPERFELEYTTAQG 496

Query: 308 KDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                 M    +     R +  +IE+      +                           
Sbjct: 497 TKSVPVMLHRALFGSIERFLGILIENFKGRFPLWLSPEQVRIITVA-------DRHIPGA 549

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +++     ++G  V  DD  E +  +   A  +     + +G   ++++ + ++ R   +
Sbjct: 550 KELEEAWKRLGLVVTLDDSSESVSKKIRNAQNMQVNYMITLGDHEINENVLAVRTRDNRV 609

Query: 426 REDMSLEEVINYASHRFSN 444
             D+S+E  +N      ++
Sbjct: 610 INDVSVERFLNTILEEKNS 628


>gi|224417829|ref|ZP_03655835.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253827169|ref|ZP_04870054.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313141370|ref|ZP_07803563.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253510575|gb|EES89234.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313130401|gb|EFR48018.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
          Length = 605

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/444 (15%), Positives = 150/444 (33%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      ++ L T    +   G+  WLP G +   N+  ++ +   
Sbjct: 197 LNQYLRQMEEAKKRDHRKVGTEMELFT-FDEEIGAGLPIWLPKGARLRRNIERLLTKALI 255

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  + +W  SG Y +YG+ M      +       P +      +++S +
Sbjct: 256 QRGYEPVRGPEILKSAVWKTSGHYSNYGENM-YFTTIDGVEYGIKPMNCVGHIKVYQSAL 314

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  FY+  +  R E      G++R REF   DA+ F    + +      +    
Sbjct: 315 RSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCRPSQIATE-VENIIDF- 372

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                            +  I       + +   T   +   S +  +    +     + 
Sbjct: 373 -----------------TKKIMDSFDFSYEMEISTRPEKSIGSDEVWEEATQALKNALEI 415

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D++    +     I++                 
Sbjct: 416 CNIPYKIDEGGGAFYGPKIDI---KITDAIGRKWQCGTIQIDMNLP--------ERFKLE 464

Query: 302 FKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +      V +    +G+     A++            +       + I I    + 
Sbjct: 465 YTDENNSSKQPVMIHRAILGSFERFIAILTEHFG------GEFPFFIAPTQIIIIPLGEA 518

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L  V      D+  E +  +   A+    P+ V++G+K   +  V I+ 
Sbjct: 519 QESYAKELRNQLLNVNVYAEIDNKNETLNKRIRNAEKQRVPMIVVLGAKEEQEKIVAIRD 578

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    +  M  +E I ++  +   
Sbjct: 579 RREKQQSTMGFDEFIKFSKEKMRE 602


>gi|282890339|ref|ZP_06298867.1| hypothetical protein pah_c016o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499721|gb|EFB42012.1| hypothetical protein pah_c016o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 641

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD ++   KL L +  + + + G+    P G    + + A +R+  +   
Sbjct: 230 YLTSVEEAKKRDHKVLGAKLDLFS--LKEEAPGMPFIHPKGTIIWNELLAYLRQCLDDKN 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            IE+  PT+ + DLW  SG + +Y + M   ++  ++     P +       +R  I SY
Sbjct: 288 YIEIKTPTMMTRDLWELSGHWSNYRQNMFT-SEIENRDFAIKPMNCPGCMLYYRGQIHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +I    R E      G+ R R F   DA+ F    +        +      I
Sbjct: 347 RELPLRVAEIGNVHRFEPSGSLSGLFRVRSFHQDDAHIFMKPSDIRSE-ILNVLNLAHEI 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL    +   + P                E     +    +          D+   
Sbjct: 406 YSTFGLTYR-LELSTRP----------------EKNTIGTDKEWEIATEGLKNALDETGR 448

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D H   + D++    +     +++     F           +  
Sbjct: 449 PYRINEGDGAFYGPKIDFH---IQDAINRTWQCGTIQLDMALPEKF--------ELEYTA 497

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +     G++     ++     G+  +W           + +        +
Sbjct: 498 EDGSRQRPVMIHRAIFGSIERFFGILIEHFSGRFPLW------ISPLQVRLIPVADRHVE 551

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +  +  + G     D+  E +  +   A L      + VG + V +  V ++ R  
Sbjct: 552 YARTLRKQFKQAGFHCDIDESNESVSKKVRNAQLSQINYMLTVGDQEVQNHTVNLRTREN 611

Query: 424 GIREDMSLEEVINYASHRFSNN 445
            +  ++  EE+I        + 
Sbjct: 612 VVLGEIKPEELIASMLEEKRSR 633


>gi|251778178|ref|ZP_04821098.1| proline--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082493|gb|EES48383.1| proline--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 570

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 122/237 (51%), Positives = 159/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR+GMI + + GIY+++PLG KAL  V  IIREE
Sbjct: 1   MKMSNMLISTLREVPAEAEIDSHKLMLRSGMIRKMASGIYNYMPLGLKALKKVEDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     +  A+LW  SGR+D+YG EM R+ DRN++    GPTHEEV TDI ++
Sbjct: 61  MNEAGAQEFLASAMIPAELWQSSGRWDAYGAEMFRVKDRNERDFCLGPTHEEVFTDIAKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   +G   SYNKM+ +
Sbjct: 121 EIKSYKQLPVNLYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDKDQQGLDLSYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y++IF+R GL +  + A+SG IGG  S EF+V ++ GE  +    +  D+    E  
Sbjct: 181 YVKIFNRCGLDAKCVEADSGAIGGSNSAEFMVKSEVGEDDIVFCTEC-DYAANIEKA 236



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 105/211 (49%), Gaps = 4/211 (1%)

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--PENKRVSARGIEVGHIFYFGTKY 294
           T  ++       V           D  N    ++      K   +RG EVGHIF  GTKY
Sbjct: 357 TGANETGYHIKNVNYGRDFEGIIGDYRNVVEGEACSICGGKLTISRGTEVGHIFKLGTKY 416

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           S  M A F   +GK+    MG YGIG  R +A++IE  +D  GI+WP +VAP+ +S+I +
Sbjct: 417 SEAMDAKFIAENGKEAPFIMGCYGIGVTRTMASIIEQHNDESGIVWPLAVAPYHVSVIAV 476

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              D+       K+Y  L  +G +   DD  E+ G +F  ++++G P+++ VG K + D 
Sbjct: 477 NVKDEEQVKIATKLYEDLKSIGVEALLDDRNERAGVKFKDSEIMGIPMRITVGKK-IVDG 535

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +VE K R TG  E + +E+V       F  N
Sbjct: 536 EVEFKLR-TGDMEVVKIEDVCQIVKGEFDKN 565


>gi|226355500|ref|YP_002785240.1| threonyl-tRNA synthetase [Deinococcus deserti VCD115]
 gi|259516378|sp|C1D0W2|SYT_DEIDV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226317490|gb|ACO45486.1| putative threonine--tRNA ligase (threonyl-tRNA synthetase)
           [Deinococcus deserti VCD115]
          Length = 649

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 151/447 (33%), Gaps = 43/447 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L  L+E  R D      +L L T  I     KG+  WLP G    + +   ++E+Q R 
Sbjct: 237 YLHQLEEAKRRDHRKLGRELELFT--IDPLVGKGLPLWLPNGTVLREELAGFLKEQQFRR 294

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + + +L+  SG Y  Y        + +D+  +  P +      I+ S  +S
Sbjct: 295 GYQGVITPNIGNLELYKTSGHYPYYADGQFNPIEVDDEQYMLKPMNCPHHVRIYASKPRS 354

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +    +R E      G+ R R F   DA+ F    +  K  +  +    + 
Sbjct: 355 YRDLPVRLAEFGTVYRYEQSGELNGLTRVRGFTQDDAHLFCRPDQLKKE-FLDVLDLTVL 413

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G+  +  R  +               D    +    +   +          D++ 
Sbjct: 414 VLKTFGMNDVRFRVGTR--------------DPESDKYVGDEANWELAERQILEAVDEVG 459

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +I     A Y    D     + D L    ++    ++                 ++ 
Sbjct: 460 LPYTIEPGDAAFYGPKLDF---VVKDVLGREWQLGTIQVDYNLP--------ERFDISYV 508

Query: 304 GADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G DG+DH   M          R V  +IE       +                       
Sbjct: 509 GEDGQDHRPIMIHRAPFGSLERFVGILIEHYAGDFPLWLAPRQVMIIPIA-------DRH 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  E++ + L   G     DD   ++ ++   A+L   P+ +IVG K     +V ++ R
Sbjct: 562 NEYAEELRSELHAAGLRAEVDDSSNRMQAKVRTAELSKIPVMLIVGDKEQEARQVSVRER 621

Query: 422 ---LTGIREDMSLEEVINYASHRFSNN 445
                  R+ ++ +++      R+   
Sbjct: 622 SVEGHKERKGVAFDDLCAELLERYRAR 648


>gi|309789973|ref|ZP_07684549.1| threonyl-tRNA synthetase [Oscillochloris trichoides DG6]
 gi|308227993|gb|EFO81645.1| threonyl-tRNA synthetase [Oscillochloris trichoides DG6]
          Length = 594

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 137/443 (30%), Gaps = 39/443 (8%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E  R D      +L L          G+  + P G+     +   +RE Q R G 
Sbjct: 185 LHNLEEAKRRDHRKLGKELGLF-FFSEDVGPGLPIFTPKGEILRYEMERYVREVQTRYGY 243

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEE-VMTDIFRSHIKS 124
             +    +    L+  SG Y++Y   M     +  D      P +    MT   +  + S
Sbjct: 244 QHVWTGNVVKEQLYHRSGHYENYRDSMFPPMVESEDLVFRLKPMNCPSHMTLFNQMGVIS 303

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  F +    +R E      G+ R R     D + F    +  +  ++        
Sbjct: 304 YRDLPMRFAEFATLYRYEDSGALNGLTRVRALTQDDCHIFCRPDQIQEE-FSLALNLIRE 362

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +          +R       G                     +  +    +     D   
Sbjct: 363 VLSTYHFTDYKVRLSLRGDTGKF---------------VADDEKWEQATSALRAALDANG 407

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +      A Y   +D       D L    ++S   ++       G          + 
Sbjct: 408 VEYTEEAGEAAFYGPKADFL---ARDVLGREWQLSTIQVDFIQPSRLG--------CEYI 456

Query: 304 GADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G D + H   +      G       V+    +     +P  +AP +  +I I        
Sbjct: 457 GEDNQPHTPVVLHRAVTGTTERFLGVLI---EHYAGAFPLWLAPVQAVIIPITDK---QM 510

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +A + +  RL  VG  V  D   +++  +   A L   P  +I+G+K +    V ++ R 
Sbjct: 511 EAAQAVRQRLMAVGMRVEVDSSRDRMQGKIRRAQLQKIPYMLIIGNKELEAGAVAVRLRS 570

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 + +++ I  A       
Sbjct: 571 GEDLGAIPVDDFIARAQEEIKTR 593


>gi|326780460|ref|ZP_08239725.1| threonyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
 gi|326660793|gb|EGE45639.1| threonyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
          Length = 658

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/442 (15%), Positives = 141/442 (31%), Gaps = 38/442 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD     ++L L +    +   G+  + P G      +    R      G   +
Sbjct: 252 LEEAAKRDHRKLGNELDLFS-FPDEIGPGLAVFHPKGGVIRRAMEDYSRRRHEEEGYEFV 310

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             P      L+ +SG  D Y   M      +D       P +  +   IF +  +SYR L
Sbjct: 311 YSPHATKGKLFEKSGHLDWYADGMYPPMQLDDGVDYYLKPMNCPMHNLIFDARGRSYREL 370

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P   ++    +R E      G+ RSR F   DA+ +    + ++   ++     L +   
Sbjct: 371 PLRLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIYCTKEQMAEEL-DRTLTFVLNLLRD 429

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            GL    +   +                    +   S +  +    +     +       
Sbjct: 430 YGLTDFYLELST----------------KDPEKYVGSDETWEEATETLRQVAEKQGLPLV 473

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                 A Y       + +  D++    ++S   ++    F    ++       + G DG
Sbjct: 474 PDPGGAAFYGPKI---SVQCKDAIGRTWQMSTVQLD----FNLPERFD----LEYTGPDG 522

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                  +     G++    AV+    +     +P  +AP +   I I           +
Sbjct: 523 SKQRPVMIHRALFGSIERFFAVLL---EHYAGAFPVWLAPVQAVGIPIG---DAHIPYLQ 576

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +  A+  K G  V  D   +++  +         P  +I G + +++  V  ++R     
Sbjct: 577 EFAAKARKQGLRVDVDASSDRMQKKIRNQQKNKVPFMIIAGDEDMANGAVSFRYRDGSQE 636

Query: 427 EDMSLEEVINYASHRFSNNRPV 448
             + ++E I   +    +   V
Sbjct: 637 NGIPVDEAIAKIAKAVEDRVQV 658


>gi|326693745|ref|ZP_08230750.1| threonyl-tRNA synthetase [Leuconostoc argentinum KCTC 3773]
          Length = 654

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 144/443 (32%), Gaps = 35/443 (7%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
                +   RD       + L      +   G+  WLP G      V   I +++   G 
Sbjct: 236 LQRREEAKERDHRTIGRDMDLF-FTSQEVGSGLPVWLPNGATIRRQVERYITDKELANGY 294

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSY 125
             +  P L + +L+  SG +D Y ++M    D  D       P +      +F+   +SY
Sbjct: 295 QHVYTPVLSNLNLYKTSGHWDHYREDMFPPMDMGDGEFLELRPMNCPSHIMVFKHKPRSY 354

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++ +  R E       +     +  +     + PE  +  +  +    + ++
Sbjct: 355 RELPIRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVEPEKLEEEFKSILTMMMEVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS-ENTDFDDIIS 244
               +     R                  D   T+ +   D M     +      DD+  
Sbjct: 415 RDFNITDYRFRLS--------------YRDPKNTEKYFDDDEMWEKSQAQLKRAMDDLGL 460

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV  +    +L   + +S   ++    F    ++    + T+ G
Sbjct: 461 DYYEAEGEAAFYGPKLDVQTKT---ALGNEETMSTIQLD----FLLPERF----NLTYIG 509

Query: 305 ADGKDHYV--QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           ADG+D++    +    +G M    A +   + G    W   +AP ++ +I +        
Sbjct: 510 ADGQDNHRPVMLHRGIVGTMERFTAYLIEMYKGAFPTW---LAPLQVQIIPVNLG--AHG 564

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E+I  +L   G     +    ++G     A     P  +++G   V    V ++   
Sbjct: 565 AYAEQIKKQLQDAGLRANVETKDAKMGYLIREAQTNKIPYTLVLGDSEVEGQTVTVRKYG 624

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 M + +         +N 
Sbjct: 625 EEKTTTMPIADFQAEILADVANY 647


>gi|149183492|ref|ZP_01861921.1| prolyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148848804|gb|EDL63025.1| prolyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 569

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 120/282 (42%), Positives = 167/282 (59%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P DAE+ SH+ +LR G I Q+S GIYS+LPLG+K L  V  IIREE
Sbjct: 1   MKQSMTLIPTLRETPADAEVKSHQQLLRAGFIRQNSSGIYSFLPLGRKVLQKVEEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +E+ +P LQ A+LW ESGR+ +YG E++RL DR+ ++   G THEEV+T + R 
Sbjct: 61  MINAGGVELLMPALQQAELWQESGRWGTYGPELMRLEDRHKRSFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y K+F +
Sbjct: 121 EIKSYKKLPLTLFQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHSSYESLDDTYEKIFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R GL    + A+SG +GG  +HEF+VL+D GE  +  S     +    E     
Sbjct: 181 YSNVFTRCGLNFRAVIADSGAMGGKDTHEFMVLSDIGEDTIAYSDTSQ-YAANIEMAPVT 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                ++  E        T     E++   L   K    + +
Sbjct: 240 ARYEESTEAENEMQKIETTGQKSIEEVSSHLQVEKDKCLKSL 281



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 100/187 (53%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   +  D  P+ +      +GIEVGH+F  GT+YS  M A +   +G+   + MG Y
Sbjct: 382 ADLRFIQEGDPSPDGQGTIVFAKGIEVGHVFKLGTRYSDAMGAQYLDENGRAQSMIMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R +AAV E   D  G+ WP S+ PF + ++ I   +   R+  E++Y+ L +   
Sbjct: 442 GIGVSRTLAAVAEQYCDENGLQWPSSLTPFDVHIVPINIKNDEQRELAEQLYSELKEQRF 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD  E+ G +F  +DL+G P +V VG K  +D  VE+K R TG   ++  +E+   
Sbjct: 502 DVLLDDRQERPGVKFTDSDLIGLPFRVTVGKK-AADGVVEVKIRKTGDVIEVHKDELTAK 560

Query: 438 ASHRFSN 444
               F N
Sbjct: 561 LQELFRN 567


>gi|167036776|ref|YP_001664354.1| prolyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115198|ref|YP_004185357.1| prolyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|226701349|sp|B0KCH5|SYP_THEP3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166855610|gb|ABY94018.1| prolyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319928289|gb|ADV78974.1| prolyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 570

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 116/255 (45%), Positives = 162/255 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  I+REE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+NKM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDMDWEGLDKSFNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  +    +        +     
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISGVGEAVIAYCDNCGYAANEEKAECLI 240

Query: 241 DIISLNSIVEQWTAP 255
           +   +  ++ +    
Sbjct: 241 NQEIVEEMLPKEEVY 255



 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 101/190 (53%), Gaps = 3/190 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P         RGIEVGHIF  GTKYS  + A +   +G +  + MG
Sbjct: 381 VVADIKNVIEGDKCPRCGSPLKIDRGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIIMG 440

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R VAA+IE  HD KGIIWP SVAP+ + ++ +   ++      E IYA L K 
Sbjct: 441 CYGIGINRTVAAIIEQHHDEKGIIWPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKE 500

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD   + G +F  ADLLG P+++ VG K V D  VEIK R     E++ + +V+
Sbjct: 501 GIEVLIDDRDLRAGVKFNDADLLGIPIRITVGKK-VDDGIVEIKLRENEEAEEVKISDVV 559

Query: 436 NYASHRFSNN 445
               +     
Sbjct: 560 EKVKNIIKEK 569


>gi|222148633|ref|YP_002549590.1| threonyl-tRNA synthetase [Agrobacterium vitis S4]
 gi|254783504|sp|B9JWF4|SYT_AGRVS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221735619|gb|ACM36582.1| threonyl-tRNA synthetase [Agrobacterium vitis S4]
          Length = 666

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 78/449 (17%), Positives = 148/449 (32%), Gaps = 46/449 (10%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L IL +   RD      ++ L      +   G+  W   G K   ++ A +R     T 
Sbjct: 234 YLHILAEAEKRDHRKLGREMDLF--HFQEEGPGVVFWHGKGWKMFQSLTAYMRRRLANT- 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----------DRNDKAMIYGPTHEEVM 114
             E++ P +    LW  SG +  Y + M  +            + + +     P +    
Sbjct: 291 YQEVNAPQVLDKSLWETSGHWGWYQENMFAVKSAHAFTNPNDPEADQRVFALKPMNCPGH 350

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHS 173
             IF+  +KSYR LP    +  L  R E      G+MR R F   DA+ F    + +   
Sbjct: 351 VQIFKHGLKSYRELPVRLAEFGLVHRYEASGALHGLMRVRGFTQDDAHVFCTEEQMAAEC 410

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                   L ++   G K + ++  + P     S E    A++  T+V          I 
Sbjct: 411 LRIN-DLILSVYEDFGFKEVVVKLSTRPEKRVGSDELWDRAESVMTEVL-------KAIE 462

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
            ++        L        A Y    +     L D++    +     ++      FG  
Sbjct: 463 EQSGGRIKTGIL----PGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG-- 513

Query: 294 YSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
                 A +     +      +     G+M     ++  +  G   +W   +     ++ 
Sbjct: 514 ------AFYIDQHSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPLQVVVATIT 567

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                     D    +  +L   G +V  D   E+I  +     +   P+ ++ G +   
Sbjct: 568 ------SEADDYGRDVAEQLRDAGLEVETDFRNEKINYKVREHSVGKVPVIMVCGKREAE 621

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V I+   +  +  M+L+E I      
Sbjct: 622 ERTVNIRRLGSQDQVSMTLDEAIASLVDE 650


>gi|115446545|ref|NP_001047052.1| Os02g0538000 [Oryza sativa Japonica Group]
 gi|50251985|dbj|BAD27919.1| putative threonyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|50252661|dbj|BAD28830.1| putative threonyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|113536583|dbj|BAF08966.1| Os02g0538000 [Oryza sativa Japonica Group]
 gi|215765092|dbj|BAG86789.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222623006|gb|EEE57138.1| hypothetical protein OsJ_07040 [Oryza sativa Japonica Group]
          Length = 674

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 152/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K ++   +E  R D       L L +  I +    G+  W P G      +    ++   
Sbjct: 264 KAYIHFKEEAKRRDHRRLGLDLDLFS--IQEDAGGGLVFWHPKGAIIRHVLEDSWKQIHL 321

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  A+LW  SG  D Y + M    D  D+     P +      +++  +
Sbjct: 322 QRGYDLLYTPHVAKAELWKVSGHIDFYKENMYNQMDVEDELYQLRPMNCPYHILVYKRKL 381

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+ P    ++   +R EL     G+ R R F   DA+ F L  +        +    
Sbjct: 382 HSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDE-IRGVLDLT 440

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +I  + G +   +   + P                      S D  +    +     +D
Sbjct: 441 EQILGQFGFRYYEINLSTRPEKS-----------------VGSDDIWEKATLALKDALED 483

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 + E   A Y    D+   K+ D+L    + S   ++    F    ++ +     
Sbjct: 484 KGWEYKVDEGGGAFYGPKIDL---KIEDALGRKWQCSTVQVD----FNLPERFDITY--- 533

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 K   + +    +G++     V+    +     +P  +AP +  ++ +  ++   
Sbjct: 534 VNSNSEKKRPIMIHRAILGSLERFFGVLI---EHYAGDFPLWLAPIQARILPVTDNE--- 587

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              C ++ + L   G        GE++      A+    PL  +VG K V    + I+ R
Sbjct: 588 LQYCNEVASELKSKGIRAEV-CHGERLPKLIRNAETKKVPLMAVVGPKEVQARTLTIRSR 646

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +G    M ++E         +N 
Sbjct: 647 HSGEIGTMPVDEFFRRIQLAIANK 670


>gi|242309942|ref|ZP_04809097.1| threonyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
 gi|239523239|gb|EEQ63105.1| threonyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
          Length = 605

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 154/444 (34%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      ++ L T    +   G+  WLP G +   N+  ++ +   
Sbjct: 197 LNQYLHQMEEAKKRDHRKVGTEMELFT-FDEEIGAGLPIWLPKGSRLRRNIENLLTKALI 255

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  + +W  SG Y +YG+ M      +       P +      +++S +
Sbjct: 256 QRGYEPVRGPEILKSAVWKTSGHYANYGENM-YFTTIDGVEYGIKPMNCVGHIKVYQSAL 314

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP  FY+  +  R E      G++R REF   DA+ F    +        +    
Sbjct: 315 RSYRELPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCRPSQIGIE-VENIIDFT 373

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +I    G         + P     S E                   +    +     + 
Sbjct: 374 KKIMDSFGFSYEM-EISTRPQKSIGSDE-----------------VWEEATEALKNALNR 415

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D++    +     I++     F           
Sbjct: 416 CNIPYKIDEGGGAFYGPKIDI---KITDAIGRKWQCGTVQIDMNLPDRF--------KLE 464

Query: 302 FKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +      V +    +G+     A++     G+   +   +AP +  +I I    + 
Sbjct: 465 YTDENNSSKQPVMIHRAILGSFERFIAILTEHFGGEFPFF---IAPTQAIIIPIG---ES 518

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++   L  VG     D+  E +  +   A+    P+ +I+G+K   +  + I+ 
Sbjct: 519 QESYAKELRNALLNVGVYTEIDNKNETLNKRIRNAEKQRVPMILILGAKEQEERIIAIRD 578

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    +  M  +E I ++  +   
Sbjct: 579 RREKQQFTMGFDEFIKFSKEKMRE 602


>gi|290889941|ref|ZP_06553027.1| hypothetical protein AWRIB429_0417 [Oenococcus oeni AWRIB429]
 gi|290480383|gb|EFD89021.1| hypothetical protein AWRIB429_0417 [Oenococcus oeni AWRIB429]
          Length = 663

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 156/438 (35%), Gaps = 30/438 (6%)

Query: 11  LQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           L+E   RD      ++ L      +   G+  WLP G      +   + E++ +   + +
Sbjct: 240 LEERKERDHRTIGKQMELF-FTNPEIGAGLPVWLPNGAAIRRTIEDYLVEKERQNSYMNV 298

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNL 128
             P + + DL+  SG +D Y  +M      +D   +   P +     +IF    +SYR+L
Sbjct: 299 YTPVVSNLDLYKRSGHWDHYRDDMFPAMTADDGEQLELRPMNCPSHIEIFEHEPRSYRDL 358

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           P+   +     R E       +     +  +     + PE  +  +  +      ++H  
Sbjct: 359 PYRIAEFGQMHRWEKSGALTGLSRVREMTLNDGHTVVAPEQVEPEFKGILQLIRDVYHDF 418

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G               D              + +      +    +     DD+      
Sbjct: 419 GFTDQ-----------DYRFRLSYRDPKNTKKYYDDDAMWEHAQAALKRAMDDMGLDYFE 467

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    D+   +   +L   + +S   ++    F    ++ +     + G DGK
Sbjct: 468 AEGEAAFYGPKLDI---QFKTALGNEETMSTIQLD----FLLPERFDM----KYTGEDGK 516

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           DH   +     G +  +   +    +     +P  +AP +  +I +        D    I
Sbjct: 517 DHRPVLIHR--GVVGTMERFVAFLIEKYKGQFPTWLAPVQAVVIPVNYG--AHGDYARNI 572

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADL-LGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           Y++L K G  +  D+  E++G     A + L  P  ++VG + + D+ V ++ R +   +
Sbjct: 573 YSKLMKDGRRIKLDNRDEKLGYLIRDAQVNLKTPYILVVGDQELRDNSVTVRFRGSDQTK 632

Query: 428 DMSLEEVINYASHRFSNN 445
           +M ++E     +   +N 
Sbjct: 633 EMKIDEFEEMINDDVANY 650


>gi|317125361|ref|YP_004099473.1| prolyl-tRNA synthetase [Intrasporangium calvum DSM 43043]
 gi|315589449|gb|ADU48746.1| prolyl-tRNA synthetase [Intrasporangium calvum DSM 43043]
          Length = 588

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 106/282 (37%), Positives = 151/282 (53%), Gaps = 3/282 (1%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DAE+ SH+L++R G I + S G+Y+WLPLG + L NV  I+REE +
Sbjct: 5   MSSLFLRTLREDPADAEVPSHRLLVRAGYIRRVSPGVYTWLPLGLRVLRNVERIVREEMD 64

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  SGR+  YG  + RL DR     + GPTHEE+ T   +   
Sbjct: 65  AIGAQELLFPALLPREPFDASGRWAEYGDNIFRLQDRKGADHLLGPTHEEMFTLTVKDLY 124

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY     +Y+
Sbjct: 125 SSYKDLPLSIYQIQTKYRDEARPRAGLLRGREFVMKDSYSFDIDEAGLDKSYQAHRDAYV 184

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFDD 241
           RIF RLG   + + A +G +GG  S EF+  A+ GE   V C+       + +      +
Sbjct: 185 RIFDRLGFHYVIVEAMAGAMGGSKSEEFLATAEVGEDTYVHCTNCGYAANVEAVRVPAPE 244

Query: 242 IISLN--SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
            +  +          P   T +     L    P   R  + G
Sbjct: 245 PVGWDGVPAAHAEDTPDTPTIETLVNHLNAHHPRPDRPWSAG 286



 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 5/187 (2%)

Query: 260 SDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +    +  D  P    V    RGIE+GH+F  G KY+  +       +GK   V MGSY
Sbjct: 402 IEAAEVRFGDPCPNCDHVLEGARGIEMGHVFQLGKKYAEALDLRVLDQNGKLTTVVMGSY 461

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G+G  R VA V+E ++D  GIIWP  + P  + ++     D+    A + I   L   G 
Sbjct: 462 GVGVSRAVACVVEGNYDDSGIIWPRELTPADVHIVAAG-KDEPLFRAADDIARDLEAHGL 520

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               DD  G   G +F  ++L+G P  ++VG + ++D KVEIK R +G R +++L+ V+ 
Sbjct: 521 TCIVDDRKGVSPGVKFKDSELIGVPTIIVVG-RGLADGKVEIKDRRSGERREVALDSVVE 579

Query: 437 YASHRFS 443
                  
Sbjct: 580 SVLAEVR 586


>gi|118591255|ref|ZP_01548654.1| threonyl-tRNA synthetase [Stappia aggregata IAM 12614]
 gi|118436331|gb|EAV42973.1| threonyl-tRNA synthetase [Stappia aggregata IAM 12614]
          Length = 656

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 147/445 (33%), Gaps = 40/445 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L      +   G+  W P G     ++ A  R     
Sbjct: 237 KAYLHMLEEAEKRDHRKLGREMDLF--HFQEEGPGVVFWHPKGWDMFQSLIAYKRRVLKD 294

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIF 118
           T   E++ P +    LW  SG +  Y + M  +        +++     P +      IF
Sbjct: 295 T-YKEVNAPQVLHTSLWETSGHWTWYKENMFSVQCADPEAEDERVFALKPMNCPGHVQIF 353

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + +       
Sbjct: 354 KHGLKSYRDLPMRLAEFGMVHRYEPSGALHGLMRVRGFTQDDAHVFCTEEQMADECLKIN 413

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G   I ++  + P     +      A+             D     E  
Sbjct: 414 -DLILSVYEDFGFDEIVVKLSTRPEKRVGTDAAWDHAEA---------IMSDVLKQIEAQ 463

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               + +   I+    A Y    +     L D++    +     ++      FG      
Sbjct: 464 SGGRVKT--DILPGEGAFYGPKFEY---TLRDAIGREWQCGTTQVDFNLPERFG------ 512

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   DG+      +     G+M     ++  +  G   +W   +     ++     
Sbjct: 513 --AFYVDKDGEKKTPVMIHRAICGSMERFLGILIENFAGHFPLWFAPLQIVVATIT---- 566

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +++   L   G  V  D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 567 --SEADDYGQEVADLLKAKGLKVETDFRNEKINYKVREHSLAKVPVIIVCGMREAEERTV 624

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++   +  +  M L+E I      
Sbjct: 625 NVRRLGSKDQTPMGLDEAIAAFVEE 649


>gi|182439796|ref|YP_001827515.1| threonyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|238689023|sp|B1W3F0|SYT_STRGG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|178468312|dbj|BAG22832.1| putative threonyl-tRNA synthetase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 658

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 67/442 (15%), Positives = 141/442 (31%), Gaps = 38/442 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD     ++L L +    +   G+  + P G      +    R      G   +
Sbjct: 252 LEEAAKRDHRKLGNELDLFS-FPDEIGPGLAVFHPKGGVIRRAMEDYSRRRHEEEGYEFV 310

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             P      L+ +SG  D Y   M      +D       P +  +   IF +  +SYR L
Sbjct: 311 YSPHATKGKLFEKSGHLDWYADGMYPPMQLDDGVDYYLKPMNCPMHNLIFDARGRSYREL 370

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P   ++    +R E      G+ RSR F   DA+ +    + ++   ++     L +   
Sbjct: 371 PLRLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIYCTKEQMAEEL-DRTLTFVLNLLRD 429

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            GL    +   +                    +   S +  +    +     +       
Sbjct: 430 YGLTDFYLELST----------------KDPEKYVGSDETWEEATETLRQVAEKQGLPLV 473

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                 A Y       + +  D++    ++S   ++    F    ++       + G DG
Sbjct: 474 PDPGGAAFYGPKI---SVQCKDAIGRTWQMSTVQLD----FNLPERFD----LEYTGPDG 522

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                  +     G++    AV+    +     +P  +AP +   I I           +
Sbjct: 523 SKQRPVMIHRALFGSIERFFAVLL---EHYAGAFPVWLAPVQAVGIPIG---DAHIPYLQ 576

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +  A+  K G  V  D   +++  +         P  +I G + +++  V  ++R     
Sbjct: 577 EFAAKARKQGLRVDVDASSDRMQKKIRNQQKNKVPFMIIAGDEDMANGAVSFRYRDGSQE 636

Query: 427 EDMSLEEVINYASHRFSNNRPV 448
             + ++E I   +    +   V
Sbjct: 637 NGIPVDEAIAKIAKAVEDRVQV 658


>gi|323339586|ref|ZP_08079860.1| threonine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
 gi|323092981|gb|EFZ35579.1| threonine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
          Length = 685

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 148/439 (33%), Gaps = 32/439 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              + + RD  +  + L L    +  +   G+  W+P G      +   I +++   G  
Sbjct: 272 RQQEAHERDHRVIGNNLDLF--FVDPKVGAGLPYWMPNGATIRRTIERYIIDKEVSWGYE 329

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + DL+ +SG +D Y ++M    D  D  +    P +      I+  HI+SYR
Sbjct: 330 HVYTPILANVDLYKQSGHWDHYREDMFPPMDMGDGELLELRPMNCPSHIQIYNRHIRSYR 389

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           +LP    ++ +  R E       +     +  +     +TP+  +  + +     + ++H
Sbjct: 390 DLPLRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVTPDQIEAEFKRTLQLMVEVYH 449

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
              +     R                       + +   +  +          DD+    
Sbjct: 450 DFNINDYRFRLS-------------YRDPKNTHKYYDDDEMWEKSQRMLKAAMDDLGLEY 496

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV  +    +L   + +S   ++    F    ++       + GAD
Sbjct: 497 FEAEGEAAFYGPKLDVQTKT---ALGGEETLSTIQLD----FLLPERFD----LKYVGAD 545

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G++H   M   GI +         +           +    ++  +N+  H     D   
Sbjct: 546 GEEHRPVMIHRGIVSTMERFTAYLTEMYKGAFPTWLAPKQVEVIPVNLDLH----TDYAR 601

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+ + L+     V  DD  E++G +   A +   P  ++VG        V ++       
Sbjct: 602 KLASALAARQIRVSVDDRNEKMGYKIRQAQVNKVPYTLVVGDNEKEQGTVTVRRYGQEKT 661

Query: 427 EDMSLEEVINYASHRFSNN 445
           E M+ ++      H     
Sbjct: 662 ETMAFDDFKKILDHDLETY 680


>gi|124267077|ref|YP_001021081.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylibium
           petroleiphilum PM1]
 gi|166225459|sp|A2SH07|SYT_METPP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|124259852|gb|ABM94846.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylibium
           petroleiphilum PM1]
          Length = 635

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 147/444 (33%), Gaps = 41/444 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    + +H+ G+  W P G      V   +R     
Sbjct: 229 QQYLHMLEEAEKRDHRKLGRELDLF--HLDEHAPGLVFWHPKGWTVWQQVEQYMRAVYRD 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G +E+  P +    LW ++G +D Y + M  + +   +     P +      I++  IK
Sbjct: 287 NGYLEVKGPQILDQGLWEKTGHWDKYRENMF-VTESEKRDYALKPMNCPGHILIYKQGIK 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +     R+E      G+MR R F   D + F                   
Sbjct: 346 SYRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIFCTEEHILPECVAYT-ALLQ 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++   G   I  +  + P                      S    D    +        
Sbjct: 405 KVYKDFGFNDIIYKVATRPEKR-----------------IGSDAVWDKAEHALMESLRAS 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    +     L D+L    +     ++    F    +    + A +
Sbjct: 448 GCEFVVSPGDGAFYGPKIEY---TLKDALGRQWQCGTMQVD----FSLPER----LDAVY 496

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               G+    V +    +G++     ++    +      P  +AP ++ ++NI       
Sbjct: 497 VAESGERLFPVMLHRAIVGSLERFIGILI---EQHAGALPAWLAPVQVMVLNITDG---Q 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   +I   L K G     D   E+I  +     +   P  ++VG K  +   V ++ R
Sbjct: 551 ADYAAEIAKTLQKQGVRAGVDLRNEKITYKIREHSMQKLPYILVVGDKEKAAGAVAVRAR 610

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  M L+      +   ++ 
Sbjct: 611 GNQDLGVMPLDAFSQRMASDIAHK 634


>gi|296446450|ref|ZP_06888394.1| threonyl-tRNA synthetase [Methylosinus trichosporium OB3b]
 gi|296256085|gb|EFH03168.1| threonyl-tRNA synthetase [Methylosinus trichosporium OB3b]
          Length = 643

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 77/425 (18%), Positives = 145/425 (34%), Gaps = 37/425 (8%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      ++ L      +   G   W   G     ++ + +R  Q   G
Sbjct: 232 YLHRLEEAERRDHRRLGREMDLF--HFQEEGPGTIFWHEKGWALFQSLVSYMRRRQKAAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E++ P +    LW  SG + +Y + M      +++     P +      IF++ +KSY
Sbjct: 290 YKEVNTPQVLDRALWETSGHWQTYRENMFLTKTEDERIFALKPMNCPGHVQIFKNGLKSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R E      G+MR R F   DA+ F    +  + +        L I
Sbjct: 350 RDLPVKIAEFGIVHRYEPSGALHGMMRVRAFTQDDAHIFCNEDQIMEEALKIN-DLILTI 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   + ++  + P     S E    A+    +V       +       T  +    
Sbjct: 409 YRDFGFDDVVVKLSTRPEKHVGSDEAWAKAEAALYKVL-----DELKARGLKTGVN---- 459

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D++    +     ++      FG        A + G
Sbjct: 460 -----PGEGAFYGPKLEY---TLRDAIGREWQCGTTQVDFNLPGRFG--------AFYIG 503

Query: 305 -ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               K   V +     G++     ++   + G   +W   +     ++       Q   D
Sbjct: 504 SDSEKKTPVMIHRAMFGSLERFTGILIEHYAGHLPLWLSPLQIVVCTIT------QDADD 557

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A    VG  V  D   E+I  +     L   P+ ++VG K  ++  V I+   +
Sbjct: 558 YAYEVAAEARNVGLAVDLDLRNEKITYKVREHSLAKVPVLLVVGKKEAAEHTVSIRRLGS 617

Query: 424 GIRED 428
             +  
Sbjct: 618 QAQSS 622


>gi|288920333|ref|ZP_06414645.1| threonyl-tRNA synthetase [Frankia sp. EUN1f]
 gi|288348281|gb|EFC82546.1| threonyl-tRNA synthetase [Frankia sp. EUN1f]
          Length = 658

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 138/445 (31%), Gaps = 37/445 (8%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   L +   RD      +L L +    +   G+  + P G      +    R      G
Sbjct: 248 YQHRLAEAEKRDHRRLGAELDLFS-FPTEIGPGLAVFHPKGGAIRTVMEDYSRRRHIEAG 306

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKS 124
              ++ P +  +DL+  SG  D +   M               P +  +   IFRS  +S
Sbjct: 307 YEFVNTPHITKSDLYEISGHLDWFADGMYPPMQLDGGADYYLKPMNCPMHILIFRSRGRS 366

Query: 125 YRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP   ++    +R E      G+ R R     DA+ F    +  +   + +    L 
Sbjct: 367 YRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDAHLFCAREQLPEEL-DSVLKFVLG 425

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    GL+   +   + P                E +   S +                 
Sbjct: 426 LLRDYGLEDFYLELSTRP----------------EGKAIGSDEEWAEATELLREAASKQD 469

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y       + +  D++    ++S   ++    F    ++ +   A   
Sbjct: 470 LELVMDEGGGAFYGPKI---SVQAKDAIGRTWQLSTIQVD----FQLPQRFDMTYQAA-- 520

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               +     +     G +    A++    +      P  +AP ++  I I         
Sbjct: 521 -DGTRQRPFMIHRALFGTIERFFAILL---EHYAGALPPWLAPVQVVGIPIT---DEHVP 573

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               + A+L + G  V  D   +++  +   A     P  ++ G + VS   V  + R  
Sbjct: 574 YLADVAAKLRERGIRVEVDSSDDRMQKKIRTAQKQKVPFMLLAGDEDVSKGAVSFRFRDG 633

Query: 424 GIREDMSLEEVINYASHRFSNNRPV 448
             R  + ++E +            V
Sbjct: 634 TQRNGVPVDEAVAEILDVVERRVQV 658


>gi|119484696|ref|ZP_01619178.1| prolyl-tRNA synthetase [Lyngbya sp. PCC 8106]
 gi|119457514|gb|EAW38638.1| prolyl-tRNA synthetase [Lyngbya sp. PCC 8106]
          Length = 604

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 123/276 (44%), Positives = 162/276 (58%), Gaps = 7/276 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK     L+E+P +AEI SHKL++R G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSKMLFVTLREDPAEAEIPSHKLLVRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P +Q A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNATGAEECLLPQVQPAELWQESGRWDTYTKAEGIMFALRDRRNRDLALGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF +  E  K +Y  M
Sbjct: 121 AKEMIRSYQQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHIDEESLKATYKDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  I  R GL    + A+SG IGG  S EF+VLA+ GE +V  ++D   +    E  
Sbjct: 181 DRAYRNILTRSGLAFRAVEADSGAIGGSGSQEFMVLAEAGEDEVLYTEDG-KYAANVEKA 239

Query: 238 ---DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                D   S     E+   P  AT +     L  S
Sbjct: 240 VSLPADAEPSTFKTYEKRETPNTATIETVCNFLKCS 275



 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 1/172 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     +ARGIEVGHIF  GTKYS  M AT     G++  + MG YG+G  R+  + +E 
Sbjct: 427 PNQILETARGIEVGHIFQLGTKYSQMMGATCTNEKGEEIPLVMGCYGVGVSRLAQSAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GIIWP ++AP+   +     +D    +  E +Y +L++VG +   DD  E+ G +
Sbjct: 487 SYDKDGIIWPVAIAPYHAIITIPNINDTQQLETAENLYTQLNQVGIETLLDDRNERAGVK 546

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F  ADL+G P +++ G + +   KVEI  R T   +++++E+V++Y     +
Sbjct: 547 FKDADLIGIPYRIVTG-RSLKSGKVEIVERATHTSQEVAVEDVVSYLQKSIA 597


>gi|332187352|ref|ZP_08389090.1| threonyl-tRNA synthetase [Sphingomonas sp. S17]
 gi|332012513|gb|EGI54580.1| threonyl-tRNA synthetase [Sphingomonas sp. S17]
          Length = 664

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 86/454 (18%), Positives = 159/454 (35%), Gaps = 48/454 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++   + +   RD     +++ L    + Q + G   W P G +    + A +R   +
Sbjct: 236 LAEHLTRLEEAAKRDHRKLGNEMDLF--HLQQEAHGSVFWHPKGYRIWRELEAYMRRAID 293

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYGPT 109
            TG  E+  P +  A  W +SG +  Y + M  + D              + + M   P 
Sbjct: 294 ATGYREVKTPQVMDARQWEQSGHWGKYRENMFVIPDEVPNTEDEGPLVSDDAQWMALKPM 353

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPE 168
           +      IFR  IKSYR+LP  FY+     R+E      G+MR R+F   DA+ F    +
Sbjct: 354 NCPAHVLIFRQGIKSYRDLPLRFYENGCCHRNEPHGALHGLMRVRQFTQDDAHIFCREDQ 413

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             +           RI+   G      +    P     + E    A+        +    
Sbjct: 414 IVEE-VRAFCELADRIYKDFGFTYSI-KLALRPEKRFGTEEMWDQAEEELRNAVVAAGLA 471

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                 E             +    A YA   + H   L D++    +V     +     
Sbjct: 472 TEQYGWEE------------LPGEGAFYAPKLEWH---LTDAIGRTWQVGTIQSDRVLP- 515

Query: 289 YFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                    + A++ G DG+ H    +     G+      ++   + G+  +W   V   
Sbjct: 516 -------ERLDASYIGEDGERHRPIMLHRAIFGSYERFIGILIEHYAGRFPVWLAPVQAV 568

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
             +++             E+  A+L+  G  V  D   E+I  +     +   P+ ++VG
Sbjct: 569 VATIV------SDADGYAEEAAAKLAAAGIRVETDLRNEKINYKVREHSVAKVPVLLVVG 622

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +   + KV ++   +  +E M+L+E I      
Sbjct: 623 KREAEEGKVAVRRLGSQAQEVMTLDEAIATLRGE 656


>gi|29833364|ref|NP_827998.1| threonyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
 gi|73919829|sp|Q827U8|SYT_STRAW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|29610487|dbj|BAC74533.1| putative threonyl-tRNA synthetase [Streptomyces avermitilis
           MA-4680]
          Length = 658

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 71/440 (16%), Positives = 136/440 (30%), Gaps = 38/440 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     ++L L + +  Q   G+  + P G      +    R      G   +  
Sbjct: 254 EAEKRDHRKLGNELDLFS-IPDQIGSGLAVFHPKGGIVRRVMEDYSRRRHEEEGYEFVYT 312

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+  SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 313 PHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 372

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R+R F   DA+ +    + +    +K     L +    G
Sbjct: 373 RLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTREKMADEL-DKTLTFVLNLLRDYG 431

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +                    +   S +  +    +     +         
Sbjct: 432 LTDFYLELST----------------KDPEKFVGSDEVWEEATETLRQVAEKQGLPLVPD 475

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++    F    ++       + G DG  
Sbjct: 476 PGGAAFYGPKI---SVQAKDAIGRTWQMSTVQLD----FNLPERFD----LEYTGPDGSK 524

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +     G++    AV+    +     +P  +AP +   I I        +  +K 
Sbjct: 525 QRPVMIHRALFGSIERFFAVLL---EHYAGAFPAWLAPVQAVGIPIG---DAHVEYLQKF 578

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A   K G  V  D   +++  +   A     P  VI G + ++   V  ++R       
Sbjct: 579 AAEAKKKGLRVEVDSSSDRMQKKIRNAQKQKVPFMVIAGDEDMTAGAVSFRYRDGSQENG 638

Query: 429 MSLEEVINYASHRFSNNRPV 448
           + L+E I   +        V
Sbjct: 639 IPLDEAIAKIAKVVEERTQV 658


>gi|254383626|ref|ZP_04998976.1| threonyl-tRNA synthetase [Streptomyces sp. Mg1]
 gi|194342521|gb|EDX23487.1| threonyl-tRNA synthetase [Streptomyces sp. Mg1]
          Length = 658

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 65/440 (14%), Positives = 139/440 (31%), Gaps = 38/440 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     ++L L +    +   G+  + P G      +    R      G   +  
Sbjct: 254 EAEKRDHRKLGNELDLFSV-PDEIGSGLAVFHPRGGIIRRTMEDYSRRRHEEEGYEFVYT 312

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+ +SG  D Y + M               P +  +   IF +  +SYR LP 
Sbjct: 313 PHATKGALFEKSGHLDWYAEGMYPPMQLDGGTDYYLKPMNCPMHNLIFDARGRSYRELPL 372

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R+R F   DA+ +    + ++   ++     L +    G
Sbjct: 373 RLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTREQMAEEL-DRTLTFVLNLLRDYG 431

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +                    +   S +  +          +         
Sbjct: 432 LTDFYLELST----------------KDPEKFVGSDEAWEEATAVLAQVAEKQGLPLVPD 475

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++    F    ++    +  +   DG  
Sbjct: 476 PGGAAFYGPKI---SVQCKDAIGRTWQMSTVQLD----FNLPERF----NLEYTAPDGSR 524

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +     G++    AV+    +      P  +AP +   I I        +  ++ 
Sbjct: 525 QRPVMIHRALFGSIERFFAVLL---EHYAGAMPPWLAPVQAVGIPIGDGH---VEYLQEF 578

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A   K G  V  D   +++  +      L  P  +IVG + ++   V  ++R       
Sbjct: 579 AAEAKKQGLRVEVDASSDRMQKKIRNHQKLKVPFMIIVGDEDMAAGTVSFRYRDGSQENG 638

Query: 429 MSLEEVINYASHRFSNNRPV 448
           ++ +E +   +   ++   V
Sbjct: 639 IAKDEALAKLAKVVADRVQV 658


>gi|281419389|ref|ZP_06250404.1| prolyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|281407009|gb|EFB37272.1| prolyl-tRNA synthetase [Clostridium thermocellum JW20]
          Length = 572

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 117/267 (43%), Positives = 159/267 (59%), Gaps = 6/267 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F   L+E P +AEIASH+LMLR G++ + + GIYS+LPLG +    +  I+REE
Sbjct: 1   MRVSNMFFQTLREVPAEAEIASHQLMLRAGLMRKLASGIYSFLPLGYRVFRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +  L  A+ +  SGR++ +G EM RL DRN +    GPTHEE+ T+  +S
Sbjct: 61  MDRAGAQELIMSALLPAESYQASGRWEVFGAEMFRLKDRNGRDFCLGPTHEEIFTETVKS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SYR+LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 VTRSYRSLPLILYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDRDEAGLDISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS------ 234
           Y RIF RLGL  I + A++G +GG  S EF+V +  GE+++   +               
Sbjct: 181 YCRIFDRLGLDYIIVDADTGAMGGSGSQEFMVKSAVGESRIAYCEACGYAANDEKAECVP 240

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSD 261
           E    D        +E+   P   T +
Sbjct: 241 EKCCDDKECCGELGLEKVATPDVRTIE 267



 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+   K  D+ P+         GIEVGHIF  GTKYS  +   +    GK+  + MG 
Sbjct: 382 VKDIRTIKEGDACPKCGAPVKVEFGIEVGHIFKLGTKYSEALDCIYLDETGKERPMIMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +AAVIE ++D  GIIWP S+AP+ + +I +   D V  +  EKIY +L ++G
Sbjct: 442 YGIGINRSMAAVIEQNNDENGIIWPISIAPYHVIVIPVNTTDSVQMELAEKIYTQLGEMG 501

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G +F  ADL+G P+++ VG +   +  VE K R       +  EE I 
Sbjct: 502 IEVLLDDRDERPGVKFKDADLIGIPIRITVGKR-AGEGIVEYKLRREKDFAAIPYEEAIA 560

Query: 437 YASHRFSN 444
            A    + 
Sbjct: 561 KAKKEVAE 568


>gi|169347105|ref|ZP_02866047.1| threonyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
 gi|169296788|gb|EDS78917.1| threonyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
          Length = 643

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 153/444 (34%), Gaps = 35/444 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L + T       +G+   +P G + +  +   I +E+ R G
Sbjct: 229 YLEALEEAKKRDHNKLGRELGIFTT-DENVGQGLPLLMPKGARIIQTLQRWIEDEEQRRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA--MIYGPTHEEVMTDIFRSHIK 123
            +    P +  +DL+  SG +D Y   M  L D    +      P        I+ S   
Sbjct: 288 YVLTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDSEVFALRPMTCPFQYAIYNSTQH 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +    FR+E      G++R R+F + D +    TPE  +  +        
Sbjct: 348 SYRDLPVRFAETSTLFRNESSGEMHGLIRVRQFTLADGHIVC-TPEQLEDEFKNTVDLVK 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +   LG            I  D+++ F         +     +  +          + +
Sbjct: 407 YVMETLG------------IADDITYRFSKWDPNNTEKYINDPEAWENTQNIMREILNHL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +  +   A Y    D+  + +     +   +    I+      FG          +
Sbjct: 455 NIDFTEADDEAAFYGPKLDIQFKNVH---GKEDTIITIQIDFALAERFG--------MYY 503

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG+     +     IG      A++    +      P  +AP +  ++ +       
Sbjct: 504 IDKDGEKKRPYIIHRSSIGCYERTLAMLI---EKYAGALPTWIAPVQAKVLPLSDK---Y 557

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L + G  V  D   E+IG +   A L   P  ++VG K   + +V ++ R
Sbjct: 558 ADYANEVVEELRRRGVRVEADHRAEKIGYKIREARLERTPYILVVGEKEAENKEVSVRSR 617

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    M L + +N      +N 
Sbjct: 618 KNGEEGAMPLADFVNRIVLEIANR 641


>gi|110802298|ref|YP_699583.1| threonyl-tRNA synthetase [Clostridium perfringens SM101]
 gi|123047184|sp|Q0SQM4|SYT_CLOPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110682799|gb|ABG86169.1| threonine--tRNA ligase [Clostridium perfringens SM101]
          Length = 643

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 153/444 (34%), Gaps = 35/444 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L + T       +G+   +P G + +  +   I +E+ R G
Sbjct: 229 YLEALEEAKKRDHNKLGRELGIFTT-DENVGQGLPLLMPKGARIIQTLQRWIEDEEQRRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA--MIYGPTHEEVMTDIFRSHIK 123
            +    P +  +DL+  SG +D Y   M  L D    +      P        I+ S   
Sbjct: 288 YVLTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDSEVFALRPMTCPFQYAIYNSTQH 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +    FR+E      G++R R+F + D +    TPE  +  +        
Sbjct: 348 SYRDLPVRFAETSTLFRNESSGEMHGLIRVRQFTLADGHIVC-TPEQLEDEFKNTVDLVK 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +   LG            I  D+++ F         +     +  +          + +
Sbjct: 407 YVMETLG------------IADDITYRFSKWDPNNTEKYINDPEAWENTQNIMREILNHL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +  +   A Y    D+  + +     +   +    I+      FG          +
Sbjct: 455 NIDFTEADDEAAFYGPKLDIQFKNVH---GKEDTIITIQIDFALAERFG--------MYY 503

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG+     +     IG      A++    +      P  +AP +  ++ +       
Sbjct: 504 IDKDGEKKRPYIIHRSSIGCYERTLAMLI---EKYAGALPTWIAPVQAKVLPLSDK---Y 557

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L + G  V  D   E+IG +   A L   P  ++VG K   + +V ++ R
Sbjct: 558 ADYANEVVEELRRRGVRVEADHRAEKIGYKIREARLERTPYILVVGEKEAENKEVSVRSR 617

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    M L + +N      +N 
Sbjct: 618 KNGEEGAMPLADFVNRIVLEIANR 641


>gi|18311304|ref|NP_563238.1| threonyl-tRNA synthetase [Clostridium perfringens str. 13]
 gi|110801319|ref|YP_697012.1| threonyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|168205151|ref|ZP_02631156.1| threonyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|168210374|ref|ZP_02635999.1| threonyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|168213233|ref|ZP_02638858.1| threonyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|168216713|ref|ZP_02642338.1| threonyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
 gi|182625789|ref|ZP_02953556.1| threonyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|22654117|sp|Q8XI02|SYT_CLOPE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123148532|sp|Q0TMX8|SYT_CLOP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|18145987|dbj|BAB82028.1| threonine-tRNA ligase [Clostridium perfringens str. 13]
 gi|110675966|gb|ABG84953.1| threonyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|170663286|gb|EDT15969.1| threonyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|170711530|gb|EDT23712.1| threonyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|170715283|gb|EDT27465.1| threonyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|177908945|gb|EDT71432.1| threonyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|182381219|gb|EDT78698.1| threonyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
          Length = 643

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 153/444 (34%), Gaps = 35/444 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L + T       +G+   +P G + +  +   I +E+ R G
Sbjct: 229 YLEALEEAKKRDHNKLGRELGIFTT-DENVGQGLPLLMPKGARIIQTLQRWIEDEEQRRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA--MIYGPTHEEVMTDIFRSHIK 123
            +    P +  +DL+  SG +D Y   M  L D    +      P        I+ S   
Sbjct: 288 YVLTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDSEVFALRPMTCPFQYAIYNSTQH 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +    FR+E      G++R R+F + D +    TPE  +  +        
Sbjct: 348 SYRDLPVRFAETSTLFRNESSGEMHGLIRVRQFTLADGHIVC-TPEQLEDEFKNTVDLVK 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +   LG            I  D+++ F         +     +  +          + +
Sbjct: 407 YVMETLG------------IADDITYRFSKWDPNNTEKYINDPEAWENTQNIMREILNHL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +  +   A Y    D+  + +     +   +    I+      FG          +
Sbjct: 455 NIDFTEADDEAAFYGPKLDIQFKNVH---GKEDTIITIQIDFALAERFG--------MYY 503

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG+     +     IG      A++    +      P  +AP +  ++ +       
Sbjct: 504 IDKDGEKKRPYIIHRSSIGCYERTLAMLI---EKYAGALPTWIAPVQAKVLPLSDK---Y 557

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++   L + G  V  D   E+IG +   A L   P  ++VG K   + +V ++ R
Sbjct: 558 ADYANEVVEELRRRGVRVEADHRAEKIGYKIREARLERTPYILVVGEKEAENKEVSVRSR 617

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    M L + +N      +N 
Sbjct: 618 KNGEEGAMPLADFVNRIVLEIANR 641


>gi|255507180|ref|ZP_05382819.1| threonyl-tRNA synthetase [Chlamydia trachomatis D(s)2923]
 gi|289525626|emb|CBJ15104.1| threonyl-tRNA synthetase [Chlamydia trachomatis Sweden2]
 gi|296435188|gb|ADH17366.1| threonyl-tRNA synthetase [Chlamydia trachomatis E/150]
 gi|296438907|gb|ADH21060.1| threonyl-tRNA synthetase [Chlamydia trachomatis E/11023]
          Length = 635

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 140/445 (31%), Gaps = 42/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD  +   KL L +      S G+  + P G    + +    +    
Sbjct: 223 LKEHLHQLEEAKKRDHRVLGTKLDLFSQ--QTCSAGMPFFHPRGMVVWNALVDYWKRLHQ 280

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  ++  P L + +LW  SG +++Y + M  L   +++     P +       +++ +
Sbjct: 281 RAGYQQIQTPQLMNRELWEISGHWENYKENMYTLT-VDEEDYAIKPMNCPGCMLYYKTQL 339

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR  P    +I    R EL     G+MR R F   DA+   LTPE  +     +    
Sbjct: 340 HSYREFPLRIAEIGHVHRHELSGALSGLMRVRTFHQDDAH-VFLTPEQVEEETLNILNLV 398

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   GL+   +   + P                E     S D  +    +       
Sbjct: 399 SELYGTFGLEY-HLELSTRP----------------EQGTIGSDDLWELATEALKRALVK 441

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I     A Y    D+H           K    R  + G I              
Sbjct: 442 SQKPFIISPGEGAFYGPKIDIHV----------KDAINRTWQCGTI-QLDMFLPERFDLK 490

Query: 302 FKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +  A G+     M    +     R +  +IE       +                     
Sbjct: 491 YTNAQGEKSTPIMLHRALFGSIERFLGILIEHFKGRFPLWLSPEHVRIITVA-------D 543

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +++    S++G  V  D   E +  +   A  +     + +G K +    + ++
Sbjct: 544 RHEARAQELAKHFSQMGIIVSVDSSNESVSKKIRNAQNMQVNYMITIGDKELETHLLAVR 603

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R   +  D+++E+  +       +
Sbjct: 604 IRDNRVLNDIAVEQFSHVILEELRS 628


>gi|225424719|ref|XP_002265302.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296086530|emb|CBI32119.3| unnamed protein product [Vitis vinifera]
          Length = 686

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 157/443 (35%), Gaps = 38/443 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  +Y   I +    D  +   K  L     H  S G + +LP G +  + +   I+ + 
Sbjct: 278 RLKEYIARIEEAKKYDHRLLGVKQELF--FCHPLSPGSWFFLPHGGRIYNKLMEFIKAQY 335

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  PT+ +  LW  SG   +Y + M  + +   +     P +      +F   
Sbjct: 336 RERGYHEVFSPTMYNMQLWETSGHAANYKENMF-VFEVEKQEFGLKPMNCPGHCLMFEHR 394

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP       +  R+E      G+ R R F   DA+ F       K     +   
Sbjct: 395 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCR-ESQIKDEVMGVLEF 453

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
               ++  G     ++  + P                  +     +  +    +     D
Sbjct: 454 INYAYNIFGFTYE-LKLSTRP-----------------EKYLGDLETWEKAEAALTEALD 495

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  I E   A Y    D+    + D+L    + +   ++    F   +++ L  SA
Sbjct: 496 QSGKPWEINEGDGAFYGPKIDI---SVSDALSRKFQCATLQLD----FQLPSRFDLSYSA 548

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                  ++  V +    +G++  + A++    +     WP  ++P +  +  +    Q 
Sbjct: 549 E--DEAKRERPVMIHRAILGSVERMFAILL---EHYKGKWPFWLSPRQAIVCPVSEKSQ- 602

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 K+  ++ + G  V  D    +I  +   A L  +   ++VG +  +  +V ++ 
Sbjct: 603 --PYALKVRDQIHQAGYYVDVDTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRV 660

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R  G    MS+E ++++     +
Sbjct: 661 RDKGDHSVMSMENLLSFFKSEIA 683


>gi|256005276|ref|ZP_05430242.1| prolyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|255990712|gb|EEU00828.1| prolyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|316939553|gb|ADU73587.1| prolyl-tRNA synthetase [Clostridium thermocellum DSM 1313]
          Length = 572

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 117/267 (43%), Positives = 159/267 (59%), Gaps = 6/267 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F   L+E P +AEIASH+LMLR G++ + + GIYS+LPLG +    +  I+REE
Sbjct: 1   MRVSNMFFQTLREVPAEAEIASHQLMLRAGLMRKLASGIYSFLPLGYRVFRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +  L  A+ +  SGR++ +G EM RL DRN +    GPTHEE+ T+  +S
Sbjct: 61  MDRAGAQELIMSALLPAESYQASGRWEVFGAEMFRLKDRNGRDFCLGPTHEEIFTETVKS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SYR+LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 VTRSYRSLPLILYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDRDEAGLDISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS------ 234
           Y RIF RLGL  I + A++G +GG  S EF+V +  GE+++   +               
Sbjct: 181 YCRIFDRLGLDYIIVDADTGAMGGSGSQEFMVKSAVGESRIAYCEACGYAANDEKAECVP 240

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSD 261
           E    D        +E+   P   T +
Sbjct: 241 EKCCDDKECCGELGLEKVATPDVRTIE 267



 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+   K  D+ P+         GIEVGHIF  GTKYS  +   +    GK+  + MG 
Sbjct: 382 VKDIRTIKEGDACPKCGAPVKVEFGIEVGHIFKLGTKYSEALDCIYLDETGKERPMIMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +AAVIE ++D  GIIWP S+AP+ + +I +   D V  +  EKIY +L ++G
Sbjct: 442 YGIGINRSMAAVIEQNNDENGIIWPISIAPYHVIVIPVNTTDSVQMELAEKIYTQLGEMG 501

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G +F  ADL+G P+++ VG +   +  VE K R       +  EE I 
Sbjct: 502 IEVLLDDRDERPGVKFKDADLIGIPIRITVGKR-AGEGIVEYKLRREKDFAAIPYEEAIA 560

Query: 437 YASHRFSN 444
            A    + 
Sbjct: 561 KAKEEVAE 568


>gi|83951679|ref|ZP_00960411.1| threonyl-tRNA synthetase [Roseovarius nubinhibens ISM]
 gi|83836685|gb|EAP75982.1| threonyl-tRNA synthetase [Roseovarius nubinhibens ISM]
          Length = 648

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 149/445 (33%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W P G      +   +R  Q  
Sbjct: 234 KAHLHMLEEAAKRDHRKLGREMDLF--HMQEEAPGQVFWHPNGWTIYTELQDYMRRAQRA 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G +E++ P +    LW +SG ++ Y + M  +       R        P +      IF
Sbjct: 292 GGYVEVNTPQVVDRKLWEKSGHWEKYQEHMFIVEVDEEHAREKAVNALKPMNCPCHVQIF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      GVMR R F   D + F    +    +  + 
Sbjct: 352 NQGLKSYRDLPLRMAEFGSCNRYEPSGALHGVMRVRGFTQDDGHIFCREDQIESET-KRF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                R++  LG ++  ++    P     S E    A+T                 +  +
Sbjct: 411 IDFLSRVYRDLGFENFSVKFSDRPEKRSGSDEVWDKAET-----------------ALKS 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +      ++     A Y    +     L D++  + +     ++    F    +    
Sbjct: 454 ATEAANCSFTLNPGEGAFYGPKLEF---VLTDAIGRDWQCGTLQVD----FVLPER---- 502

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G DG  H    +    +G+      ++   H GK   W         S++    
Sbjct: 503 LDATYIGEDGAKHRPVMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIV---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++ A L   G     D   E+I  +     +   P+ +  G + V +  V
Sbjct: 559 --SEADDYVHEVVAGLRAQGVRAEADIRNEKINYKVREHSVGKVPVILACGLREVEEKTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++          +L +V    +  
Sbjct: 617 SVRRLGEKQTSVQALADVTKALATE 641


>gi|299783724|gb|ADJ41722.1| Threonyl-tRNA synthase [Lactobacillus fermentum CECT 5716]
          Length = 601

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/440 (16%), Positives = 150/440 (34%), Gaps = 36/440 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
             +   RD  +  ++L L    +  +   G+  W+P G      +   + +++   G   
Sbjct: 190 RQEARERDHRVIGNQLDLF--FVDPKVGAGLPYWMPKGSTIRRTIERYVIDKEVGDGYEH 247

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRN 127
           +  P L + + +  SG +D Y ++M    D  D  +    P +      I++ HI+SYR 
Sbjct: 248 VYTPVLMNLNAYKTSGHWDHYREDMFPPMDMGDGELLELRPMNCPSHIQIYKHHIRSYRE 307

Query: 128 LPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP    ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++ 
Sbjct: 308 LPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQIQDE-FAKILKLIMDVYK 366

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
              +     R                       + F + +  +          D +    
Sbjct: 367 DFNINDYTFRLS-------------YRDPKNTEKYFANDEMWERSQSMLKAAMDSMGLDY 413

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    D+  +    +L  ++ +S   ++    F    K+ L     + G D
Sbjct: 414 YEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPEKFDLH----YVGED 462

Query: 307 GKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           GK H    +    +G M    A +   + G    W          +  I   D+   D  
Sbjct: 463 GKQHRPIMIHRGVVGTMERFVAYLTEIYKGAFPTWLA-----PNQVNIIPVSDEKHGDYA 517

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +             D   E++G +   +     P  ++VG   V++  V ++      
Sbjct: 518 DDLAREFRAAQLRTVVDHRSEKMGYKIRESQTQKVPYTLVVGEDEVANGTVSVRKYGEKD 577

Query: 426 REDMSLEEVINYASHRFSNN 445
           +  MS ++ ++   H  +  
Sbjct: 578 QVSMSKQDFLDLILHDVATY 597


>gi|114769524|ref|ZP_01447150.1| threonyl-tRNA synthetase [alpha proteobacterium HTCC2255]
 gi|114550441|gb|EAU53322.1| threonyl-tRNA synthetase [alpha proteobacterium HTCC2255]
          Length = 649

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 147/445 (33%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W P G K    +   +R  Q++
Sbjct: 234 KAHLTMLEEAALRDHRKLGREMDLF--HMQEEAPGQIFWHPNGWKIYTALQDYMRRMQDK 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-----GPTHEEVMTDIF 118
            G +E++ P +    LW  SG ++ Y + M  +    D A         P +      IF
Sbjct: 292 NGYVEVNTPQVVDRKLWEASGHWEKYQENMFIVEVDEDHAREKAVNALKPMNCPCHVQIF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D + F    +    +    
Sbjct: 352 NQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIFCSEEQIESET-KIY 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++  LG     ++    P     S E                   D    +  +
Sbjct: 411 IDFLSNVYKDLGFNEFKVKFSDRPEKRSGSDE-----------------VWDKAEKALLS 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     +     A Y    +     L D++  + +     ++    F    +    
Sbjct: 454 ATRAAGIEPELNIGEGAFYGPKLEF---VLTDAIGRDWQCGTHQVD----FVLPER---- 502

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A++ G DG  H    +    +G+      ++  SH GK   W         S++    
Sbjct: 503 LDASYIGKDGDKHRPVMLHRATLGSFERFIGILIESHAGKLPFWLAPRQVVVASIV---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   +  A L+  G     D   E+I  +     L   P+ + VG++ V +  V
Sbjct: 559 --SDANDYVLEKVAALNTAGIRAEADIRNEKINYKVREHSLGKVPVILAVGAREVEEDTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            ++       E     ++I   S  
Sbjct: 617 TVRRLGQKQTEVNQFNDIIAILSSE 641


>gi|169836558|ref|ZP_02869746.1| prolyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 282

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 131/278 (47%), Positives = 173/278 (62%), Gaps = 3/278 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK FL   +E P++AE+ SHKLMLR  MI Q ++G+YS+LPLG K L  +  I+REE
Sbjct: 1   MRLSKAFLKTYKEAPKEAEVISHKLMLRASMIRQLTRGVYSYLPLGYKVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +P LQ A LW ESGR+ +YG E++R+ DRN++    GPTHEEV+TDI R+
Sbjct: 61  MDRAGSQEILMPVLQPASLWEESGRWFAYGSELMRMKDRNEREFALGPTHEEVVTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LPF  YQIQ KFRDE+RPRFG+MR REFLMKDAYSF LT E     +  M  +
Sbjct: 121 TITSYKELPFNLYQIQTKFRDEMRPRFGLMRGREFLMKDAYSFHLTKESLDEEFLNMKNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--D 238
           Y RI  R+ LK   + A+SG IGGD S+EF+VLA+ GE  +  S    D+    E     
Sbjct: 181 YSRILERMELKFRAVDADSGSIGGDASNEFMVLAENGEDDILYSDS-SDYAANVEKATSI 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            +   S    + +       T  +     F ++PE K 
Sbjct: 240 IELKESSEEKLPKELVETPNTKTIKELSEFLNIPEEKL 277


>gi|84501632|ref|ZP_00999804.1| Threonyl-tRNA synthetase, class IIa [Oceanicola batsensis HTCC2597]
 gi|84390253|gb|EAQ02812.1| Threonyl-tRNA synthetase, class IIa [Oceanicola batsensis HTCC2597]
          Length = 659

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 80/456 (17%), Positives = 147/456 (32%), Gaps = 56/456 (12%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W P G      +   +R +Q  
Sbjct: 234 KAHLNMLEEAAKRDHRKLGREMGLF--HMQEEAPGQVFWHPNGWTIYTTLQDYVRRKQRA 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIY--------------G 107
            G  E++ P +    LW  SG ++ Y   M  +   +  D                    
Sbjct: 292 GGYNEINTPQVVDRKLWEASGHWEKYQHHMFIVEVDESRDGEHDDAAAKSREHTRINALK 351

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLT 166
           P +      +F   +KSYR+LP    +     R E      G+MR R F   DA+ F  T
Sbjct: 352 PMNCPCHVQVFNQGLKSYRDLPLRLAEFGSCARFEPSGALHGIMRVRGFTQDDAHIFC-T 410

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            E  +    +       I+  LG     +R  + P     + E                 
Sbjct: 411 EEQIQEECARFIDFLADIYRELGFPEFEIRFATRPEKRVGTEE----------------- 453

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             D+   +             +     A Y    D +   L D++    +     ++   
Sbjct: 454 SWDYVEGALENAIKATGHDYVLEPGDGAFYGPKLDFY---LTDAIGRVWQCGTFQVDPNL 510

Query: 287 IFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                      + A +  ADG+ H    +    +G+      ++  +H GK  +W     
Sbjct: 511 P--------ERLDAGYIAADGERHRPFMLHRAVLGSFERFIGILIENHAGKLPLWLAPRQ 562

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
               +++          D C ++ A+L   G     D   E+I  +     +   P  + 
Sbjct: 563 VVVAAIV------SDADDYCREVVAKLQAAGIRAETDLRNEKINYKVREHSVGKVPYILA 616

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            G K V +  V ++          +L+E+++     
Sbjct: 617 CGMKEVEERTVSVRKLGEKQTSGATLDEIVDRLRTE 652


>gi|163746007|ref|ZP_02153366.1| threonyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
 gi|161380752|gb|EDQ05162.1| threonyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
          Length = 648

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 144/444 (32%), Gaps = 45/444 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  L +L+E   RD      ++ L    + + + G   W P G      +   +R +Q +
Sbjct: 234 RAHLNMLEEAAKRDHRKLGREMDLF--HMQEEAPGQIFWHPNGWSIYTQLQDYMRRQQRK 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G +E++ P +    LW  SG ++ Y   M  +       R        P +      IF
Sbjct: 292 GGYVEVNTPQVVDRKLWEASGHWEKYQDHMFIVEVDEEHAREKAVNALKPMNCPCHVQIF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D + F    +  +    K 
Sbjct: 352 NQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIFCA-EDQIEAETAKF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 I+  LG ++  ++    P     S E                   D    +  +
Sbjct: 411 IAFLSEIYRDLGFENFKVKFSDRPEKRSGSDE-----------------VWDKAEAALLS 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     +     A Y    +     L D++  + +     ++    F    +    
Sbjct: 454 ATRAAGIEPELNPGEGAFYGPKLEF---VLTDAIGRDWQCGTHQVD----FVLPER---- 502

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ GADG  H    +    +G+      ++   H GK   W         S+     
Sbjct: 503 LDATYIGADGGKHRPVMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIT---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++   L   G     D   E+I  +     +   P+ + VG++ V +  V
Sbjct: 559 --SEADDYVAEVVETLKAAGVRAEADMRNEKINYKVREHSVGKVPVILAVGAREVEERTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYASH 440
            ++           L+ +    + 
Sbjct: 617 SVRRLGQKQTSVQPLDTLTAELAQ 640


>gi|307266366|ref|ZP_07547904.1| prolyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918602|gb|EFN48838.1| prolyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 570

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 116/255 (45%), Positives = 161/255 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  I+REE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+NKM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDVDWEGLDKSFNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  +    +        +     
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISGVGEAVIAYCDNCGYAANEEKAECLI 240

Query: 241 DIISLNSIVEQWTAP 255
           +      ++ +    
Sbjct: 241 NQEIDEEMLPKEKVY 255



 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 101/190 (53%), Gaps = 3/190 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P         RGIEVGHIF  GTKYS  + A +   +G +  + MG
Sbjct: 381 VVADIKNVIEGDKCPRCGSPLKIDRGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIIMG 440

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R VAA+IE  HD KGIIWP SVAP+ + ++ +   ++      E IYA L K 
Sbjct: 441 CYGIGINRTVAAIIEQHHDEKGIIWPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKE 500

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD   + G +F  ADLLG P+++ VG K V D  VEIK R     E++ + +V+
Sbjct: 501 GIEVLIDDRDLRAGVKFNDADLLGIPIRITVGKK-VDDGIVEIKLREKEEAEEVKISDVV 559

Query: 436 NYASHRFSNN 445
               +     
Sbjct: 560 EKVKNIIKEK 569


>gi|212550461|ref|YP_002308778.1| threonyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|229470721|sp|B6YQ95|SYT_AZOPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|212548699|dbj|BAG83367.1| threonyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 648

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 150/445 (33%), Gaps = 36/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+Y   + +   RD      ++ L T   H+  +G+  WLP G +    +   ++  Q 
Sbjct: 229 LSEYLALMEKAKKRDHRRIGKEMELFT-FSHKVGRGLPLWLPKGTQLRLRLEDFLKRIQK 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN--DKAMIYGPTHEEVMTDIFRS 120
           + G  ++  P + +  L++ SG Y  YGK+  +        +  +  P +     +I+++
Sbjct: 288 KYGYQQVITPHIGNKTLYIASGHYAKYGKDSFQPIHTPELGEEFLLKPMNCPHHCEIYKA 347

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SY+ LP    +    +R E      G+ R R F   DA+ F    +  +     +  
Sbjct: 348 FLRSYKELPLRLAEFGTVYRYERSGELQGLTRVRGFTQDDAHIFCSPEQVKEELIK-VID 406

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               IF  L      ++     +                 +   S++       +     
Sbjct: 407 IVRVIFCALNFNDYEVQISLRDLN-------------NRIKYIGSEENWKNSEGAIIEVC 453

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      I     A Y    D     + D+L  N ++    ++                
Sbjct: 454 QEKKIKAKIKLGEAAFYGPKLDFM---VKDALGRNWQLGTIQVDYNLP--------ERFE 502

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             + GAD + H    +     G+M    AV+     GK  +W  S     + +       
Sbjct: 503 LEYVGADNQKHRPVMIHRAPFGSMERFVAVMIEHTGGKFPLWLVSDQVVILPV------S 556

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      E+I     K    V  D   E++G +    +L   P  +I+G K   +S++ +
Sbjct: 557 ENYNQYAEEIAKEFHKRDIRVTIDKRNEKVGRKIRDNELKKIPYLLIIGEKERRNSEISV 616

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           +         M + E   +      
Sbjct: 617 RKHGKENIGIMKVTEFAEFLKKEVE 641


>gi|224438525|ref|ZP_03659445.1| threonyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313144952|ref|ZP_07807145.1| threonyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313129983|gb|EFR47600.1| threonyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
          Length = 603

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 161/442 (36%), Gaps = 38/442 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      ++ L T    +   G+  WLP G +   N+  ++    N  G
Sbjct: 198 YLFAIEEAKKRDHRKLGQEMGLFT-FDEEIGAGLPIWLPKGARLRQNLERLLTIALNERG 256

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W +SG YD+Y + M      +++     P +      +++S  +SY
Sbjct: 257 YEPVRGPEILKSDVWKKSGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSSPRSY 315

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  FY+  +  R E      G++R REF   DA+ F  T +          +S+ + 
Sbjct: 316 RELPLRFYEYGIVHRHEKSGVLHGLLRVREFTQDDAHIFCQTNQIKDE--VNHIISFTKS 373

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                  +  M   + P                  +   +    +    +     ++   
Sbjct: 374 ILDAFNFAYEMELSTRP-----------------DKSIGNDGVWESATNALKNALEENKI 416

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++     F   Y+   +A  + 
Sbjct: 417 AYQIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLPERFALSYTDENNAQVQ- 472

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                  V +    +G+     A++     G+  ++   +AP ++ LI I          
Sbjct: 473 ------PVMIHRAILGSFERFVAILTEHFAGEFPLF---IAPTQVILIPIG---DAQLGY 520

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++   + K+G      D  E +  +  +A+    PL V++G+K V    + I+ R   
Sbjct: 521 ARELRNEIIKIGGYAEIMDKNESLNKKIRLAEKQKVPLIVVIGAKEVERKILAIRDRREK 580

Query: 425 IREDMSLEEVINYASHRFSNNR 446
            +  +S  E I     +    R
Sbjct: 581 AQYGLSQAEFITTLKTKIGEIR 602


>gi|20808685|ref|NP_623856.1| prolyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
 gi|81848077|sp|Q8R7S9|SYP_THETN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|20517322|gb|AAM25460.1| Prolyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
          Length = 573

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 116/247 (46%), Positives = 157/247 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P DAEI SH LML+ G++ + + GIY +LPLG++ L  V  I+REE
Sbjct: 1   MRLSQLLMPTLREVPADAEIPSHVLMLKAGLMRKLAAGIYVYLPLGKRVLKKVEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L+ E+GR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDREGSQEVLMSALIPAELFKETGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD   EG   S+NKM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDADWEGLDESFNKMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK + + A+ G +GG  S EF+V++  GE  +             +     
Sbjct: 181 YCRIFDRCGLKYLVVEADPGAMGGRDSKEFMVISSVGEAVIAYCDSCGYAANEEKAECLI 240

Query: 241 DIISLNS 247
           +      
Sbjct: 241 ESRDEEM 247



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/163 (42%), Positives = 95/163 (58%), Gaps = 3/163 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ +    D  P        ARGIEVGHIF  GTKYS  + AT+   +G +  + MG 
Sbjct: 381 VADIKSVVEGDRCPRCGAPLKIARGIEVGHIFKLGTKYSEALGATYTDEEGNEKPIVMGC 440

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R VAA+IE  HD KGIIWP SVAP+ + ++ +   D+  +   EKIY +L +  
Sbjct: 441 YGIGINRTVAAIIEQHHDEKGIIWPMSVAPYHVIVVPVNVSDEEQKQIAEKIYNKLLEEK 500

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            +V  DD   + G +F  ADL+G P++V +G K V +  VEIK
Sbjct: 501 LEVLIDDRDVRAGVKFNDADLIGIPVRVTIGKK-VKEGIVEIK 542


>gi|326391122|ref|ZP_08212668.1| prolyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325992821|gb|EGD51267.1| prolyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 570

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 116/255 (45%), Positives = 161/255 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  +P L+E P +AEI SH LML+  ++ + + G+Y +LPLGQ+ L  V  I+REE
Sbjct: 1   MRLSQLLVPTLREIPAEAEIPSHILMLKAALMRKLASGVYIYLPLGQRVLRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  L  A+L  ESGR+D +G EM +L DRN++    GPTHEEV TD+ R+
Sbjct: 61  MDRAGSQEVLMSALIPAELLKESGRWDVFGPEMFKLKDRNERDFCLGPTHEEVFTDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP   YQIQ KFRDE RPRFGVMRSREF+MKDAYSFD+  EG   S+NKM+ +
Sbjct: 121 EVKSYRQLPLILYQIQTKFRDERRPRFGVMRSREFIMKDAYSFDVDWEGLDKSFNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GLK + + A+SG +GG  S EF+V++  GE  +    +        +     
Sbjct: 181 YCRIFDRCGLKYLVVEADSGAMGGKDSKEFMVISGVGEAVIAYCDNCGYAANEEKAECLI 240

Query: 241 DIISLNSIVEQWTAP 255
           +      ++ +    
Sbjct: 241 NQEIDEEMLPKEKVY 255



 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 101/190 (53%), Gaps = 3/190 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P         RGIEVGHIF  GTKYS  + A +   +G +  + MG
Sbjct: 381 VVADIKNVIEGDKCPRCGSLLKIDRGIEVGHIFKLGTKYSDALGAKYVDEEGNEKPIIMG 440

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R VAA+IE  HD KGIIWP SVAP+ + ++ +   ++      E IYA L K 
Sbjct: 441 CYGIGINRTVAAIIEQHHDEKGIIWPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKE 500

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD   + G +F  ADLLG P+++ VG K V D  VEIK R     E++ + +V+
Sbjct: 501 GIEVLIDDRDLRAGVKFNDADLLGIPIRITVGKK-VDDGIVEIKLREKEEAEEVKISDVV 559

Query: 436 NYASHRFSNN 445
               +     
Sbjct: 560 EKVKNIIKEK 569


>gi|257459979|ref|ZP_05625083.1| threonyl-tRNA synthetase [Campylobacter gracilis RM3268]
 gi|257442420|gb|EEV17559.1| threonyl-tRNA synthetase [Campylobacter gracilis RM3268]
          Length = 607

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 155/444 (34%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             K+   + +   RD      + M       Q   G+  WLP G +    +   +  +  
Sbjct: 199 LKKHLTMLEEAKKRDHRKLGTE-MKFFTFDEQIGAGLPIWLPAGTRMRIKLEGRLYRQLR 257

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  +D W  SG Y +Y + M       ++     P +      +++S I
Sbjct: 258 KRGYEPVRGPEILKSDAWKISGHYSNYKENM-YFTTIEEQEYGIKPMNCVGHIKVYQSEI 316

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  F +  +  R E      G+ R REF   DA+ F + P   K +  ++    
Sbjct: 317 RSYRDLPLKFCEYGVVHRHEKSGVLHGLFRVREFTQDDAHLFVM-PSQIKENVYEILDFV 375

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +    G                   E+ +   T   +     +  D    +     D+
Sbjct: 376 ELLMKAFG------------------FEYELEISTKPQKAVGDDEVWDIATKALKDALDE 417

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 + E   A Y    D+   K+ D+L    +     ++    F    ++       
Sbjct: 418 KGLKYGLDEGGGAFYGPKIDI---KITDALGRKWQCGTVQVD----FNLPARF----ELG 466

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   + +      +    +G+      ++     G+   W   + P ++S++ I    + 
Sbjct: 467 YIDENNEKKQPVMLHRAILGSFERFVGILLEHTAGELPFW---ICPTQVSIVPIG---EA 520

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I   L     D    D  E +  +   A+    PL +++G   VS   V ++ 
Sbjct: 521 HASYAKEILNLLRAADIDGEILDRNETLNKRIRTAEKQKVPLIIVLGDNEVSARSVALRD 580

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    + ++ L+E +N+   + + 
Sbjct: 581 RRAREQRNLGLDEFLNFVKAKLNE 604


>gi|239636259|ref|ZP_04677261.1| prolyl-tRNA synthetase [Staphylococcus warneri L37603]
 gi|239597614|gb|EEQ80109.1| prolyl-tRNA synthetase [Staphylococcus warneri L37603]
          Length = 567

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 197/371 (53%), Gaps = 6/371 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MEKVDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKRLPLTLFQIQSKFRDEQRPRFGLLRGREFIMKDAYSFHADEASLDETYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+G+ + P+ A+SG IGG+ +HEF+ L++ GE  +    +  D+    E  +  
Sbjct: 181 YDRIFKRVGINARPVVADSGAIGGNHTHEFMALSEIGEDTIVY-SNESDYAANIEKAEVV 239

Query: 241 DIISLNSI----VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              +  +     +++   P   T++   E L   L E  +     ++   I      +  
Sbjct: 240 YTANPKNTEVAELKKVETPNIKTAEEVAEYLNRPLDEIVKTMIFKVDGEFIMVLVRGHHE 299

Query: 297 PMSATFKGADGKDHYVQMGS-YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                 K   G D          +  +      +   HD    I+ D       + +   
Sbjct: 300 LNDVKLKAYFGTDQIEMASQDEIVNIVGAHPGSLGPIHDKDIKIYADHFVQDLNNFVIGA 359

Query: 356 AHDQVCRDACE 366
             D    +  +
Sbjct: 360 NEDGYHFENAQ 370



 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/161 (42%), Positives = 96/161 (59%), Gaps = 2/161 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E  HD  GIIW
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQHHDDNGIIW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI I    +  R   +++Y +L     DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLITINPKKEEQRKLGDQLYDQLM-NNYDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           PL+V+VG +   +  VE+K R TG  E++ ++++ NY    
Sbjct: 523 PLRVVVGKR-AEEGIVEVKQRSTGESEEIHIDDLENYIKDL 562


>gi|70725135|ref|YP_252049.1| threonyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|68445859|dbj|BAE03443.1| threonyl-tRNA synthetase 2 (Threonine--tRNA ligase) [Staphylococcus
           haemolyticus JCSC1435]
          Length = 638

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 153/442 (34%), Gaps = 41/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           YF  + +   R+      +L L   M  + + G+  +L  GQ   + +   +RE Q +  
Sbjct: 232 YFEFLREAEERNHRRLGKQLKLF--MFSEEAPGMPFYLSNGQFIRNQMENFLREVQLKHD 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW ESG +D Y + M      ++      P +      IF++ ++SY
Sbjct: 290 YDEVRTPLMMNKRLWEESGHWDHYHENM-YFTKVDENDYALKPMNCPGHMLIFKNELRSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +     R E      G++R R F   DA+ F +  +        + +     
Sbjct: 349 KDLPLRIAEFGQVHRHEFSGALNGLLRVRTFCQDDAHIFIMKSQIKSEVQEILKLI---- 404

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                            I      E+ +   T         D  +    S     DD+  
Sbjct: 405 ---------------DYIYSVFGFEYSIELSTRPDDYLGELDLWNEAEQSLAHVLDDLGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             SI E   A Y    DVH   + D+L  + + +   ++    F    K+      T+  
Sbjct: 450 DYSINEGDGAFYGPKIDVH---IKDALNRSHQCATVQLD----FQMPEKF----ELTYIN 498

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              +     +      G++     ++    +     +P  +AP +++LI +  ++     
Sbjct: 499 EQNEKERPVVLHRAVFGSLDRFFGILI---EHFKGAFPLWMAPVQVNLIGVSDNNDG--- 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +   L      V  DD  E++G +   + L      +++G        V ++    
Sbjct: 553 YVRTVAEALRDENIRVAIDDREEKLGKKIRESQLNKISYTLVLGDDEQQHHTVSVRKYAH 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              E M ++  I    H   + 
Sbjct: 613 DDNETMDIQAFIEKLKHEIESK 634


>gi|92117217|ref|YP_576946.1| threonyl-tRNA synthetase [Nitrobacter hamburgensis X14]
 gi|91800111|gb|ABE62486.1| Ser-tRNA(Thr) hydrolase [Nitrobacter hamburgensis X14]
          Length = 681

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 133/443 (30%), Gaps = 38/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      ++ L      +   G+  W   G      + A +R       
Sbjct: 257 YLKQIEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWTLFQEIIAYMRRRL-AED 313

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M       D     +     P +      IF+ 
Sbjct: 314 YDEVNAPQMLDKSLWETSGHWEWYRENMFAAQSAGDEAEDKRWFAIKPMNCPGHVLIFKH 373

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR LP    +  +  R E      G+MR R F   DA+ F    + +        +
Sbjct: 374 GLKSYRELPIRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIFCTEQQLADECLKINDL 433

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                        + ++  + P     S      A++  T V   +           T  
Sbjct: 434 ILSTYEDFGFEGELTVKLSTRPDKRVGSDAAWDHAESVMTAVL--EQIKARSGNRVKTSI 491

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +             A Y    +     L D++    +     ++      FG        
Sbjct: 492 N---------PGEGAFYGPKFEY---VLRDAIGREWQCGTTQVDFNLPERFG-------- 531

Query: 300 ATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +      K   V +     G++   A ++     G   +W   V     ++       
Sbjct: 532 AFYIDEHSNKVAPVMVHRAICGSLERFAGILIEHFAGHFPLWLAPVQAVVATIT------ 585

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   ++ A   + G  +  D   E+I  +     L   P  ++VG K      V I
Sbjct: 586 SDADDYAREVVAAARRAGLRIEIDLRNEKINYKVREHSLAKVPALLVVGKKEAESRSVSI 645

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  +  +  +E I      
Sbjct: 646 RRLGSDGQTVLPTDEAIAALVEE 668


>gi|255325212|ref|ZP_05366318.1| proline--tRNA ligase [Corynebacterium tuberculostearicum SK141]
 gi|255297777|gb|EET77088.1| proline--tRNA ligase [Corynebacterium tuberculostearicum SK141]
          Length = 589

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 170/387 (43%), Gaps = 22/387 (5%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G + + + G+Y+WLPLG + L  +  ++R+E 
Sbjct: 4   RLSELFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGVYTWLPLGLRTLRKIEDVVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM  P L   + + ++ R+  YG  + RL DR +  M+ GPTHEE+     +  
Sbjct: 64  DAIGGQEMLFPALLPREPYEKTNRWVEYGDNLFRLKDRKNADMLLGPTHEEMFASAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF MKD+YSFD+T EG   SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFTMKDSYSFDMTDEGLDESYGRHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             IF+RL +     +A SG +GG  S EF+ +++ GE   F      D+    E      
Sbjct: 184 QNIFNRLEIDYAICKATSGAMGGSASEEFLAVSEVGE-DTFVRSTEGDYAANVEAVVTPA 242

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
               +        P A   D    +  + L E  + +   ++                AT
Sbjct: 243 PAEKDI----EGQPEAQEHDTPGAETIEKLVEWAQGAGITVDG-------------REAT 285

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVA-AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                                R    A +    D +        A   +        +  
Sbjct: 286 AADTLKCMMVKLYHPAVESEERESELAAVLIPGDRELDEKRLEAALEPVEFELAGDKEFA 345

Query: 361 CRDACEKIY---ARLSKVGCDVFWDDM 384
             D   K Y     L+  G  V  D  
Sbjct: 346 DNDFLVKGYVGPRALNANGIKVLADPR 372



 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 60/188 (31%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +    K  D  PEN       RGIE+GHIF  G KY+          +GK     MG
Sbjct: 403 EFIEAAEVKEGDLAPENHGTLTLERGIELGHIFQLGRKYTEAFDVQILDENGKRAVPTMG 462

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R++A + E  HD KG+ WP +VAP+++ +      D    +A +K+   LS  
Sbjct: 463 SYGIGITRMLAVLAEQRHDDKGLNWPVAVAPYQVHVAVAN-KDAAAMEAGDKLVEELSAK 521

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD      G +F  A+LLG P   I+G +   + K+E++ R  G   ++  E++
Sbjct: 522 GLEVLFDDRPKVSPGVKFKDAELLGMPFVAILG-RAFKEGKIELRIRG-GETLEVPAEDI 579

Query: 435 INYASHRF 442
           ++      
Sbjct: 580 VDKILELV 587


>gi|329939431|ref|ZP_08288767.1| threonyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
 gi|329301660|gb|EGG45554.1| threonyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
          Length = 666

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 138/429 (32%), Gaps = 35/429 (8%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E  R D      +L L +    +   G+  + P G      +    R +   
Sbjct: 249 KAYLKLLEEASRRDHRKLGAELDLFS-FPDEIGSGLAVFHPKGGIVRREMENYSRVKHEE 307

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   ++ P +    L+  SG    Y   M    +         P +      IF+S  +
Sbjct: 308 AGYSFVNSPHITKGKLFETSGHLPYYADTMFPPIEMEGADYYLKPMNCPFHNLIFKSRGR 367

Query: 124 SYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R R   M D++ +    + +      +    L
Sbjct: 368 SYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDSHIYCTREQMAGEL-TSLLRFVL 426

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    GL    +   +     D S +FI   +             +    +  +   + 
Sbjct: 427 ALLRDYGLDDFYLELST----RDDSPKFIGSDED-----------WEEATEALRSAAAES 471

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y       + +  D++    ++S   ++      FG +YS       
Sbjct: 472 GLELVPDPGGAAFYGPKI---SVQAKDAIGRTWQMSTIQVDFNQPKRFGLEYS------- 521

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G++  V +     G++     V+   + G    W   V    I +       +   
Sbjct: 522 AANGGREQPVMIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPI------REDHA 575

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +  A+L + G     D   +++  +   A     P   I G   V+   V  ++R 
Sbjct: 576 DYLAEFVAKLREHGIRAEVDHSDDRMQKKIRTAQQQKIPFMAIAGDDDVNGGTVSFRYRD 635

Query: 423 TGIREDMSL 431
              R  + L
Sbjct: 636 GSQRNGVPL 644


>gi|299139552|ref|ZP_07032726.1| prolyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
 gi|298598480|gb|EFI54644.1| prolyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
          Length = 614

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 110/221 (49%), Positives = 147/221 (66%), Gaps = 1/221 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+P L+E P DAE+ASHKL+LR G I Q   GIYS+LPLGQ++L+ + AI+REE 
Sbjct: 3   RWSKLFIPTLREAPTDAEVASHKLLLRAGYIRQLGAGIYSYLPLGQRSLNKIIAIVREEM 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N+ G  E  +P L   +LW ESGR+   G+ +  L DR    +    THEEVMT I R+ 
Sbjct: 63  NKIG-QEFLLPALNPRELWEESGRWTGMGQNLFHLQDRKGAELCLAMTHEEVMTSIARNE 121

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SY+ LP  +YQIQ KFRDE RP+ G++R R+F MKDAYSFD+   G   SY K + +Y
Sbjct: 122 LRSYKQLPQIWYQIQTKFRDEPRPKAGLLRVRQFTMKDAYSFDVDQAGLDESYRKHYDTY 181

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           +RIF R GL+ + + A+SG +GG  S EF+V  D GE  + 
Sbjct: 182 VRIFKRCGLEFVAVDADSGAMGGSGSQEFMVYTDAGEDLIA 222



 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 60/199 (30%), Positives = 92/199 (46%), Gaps = 4/199 (2%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +T+   A     NE   D +        + +E+GHIF  GTKYS  M A    A+GK+ 
Sbjct: 416 DFTSTVVADIRNINEGEPDPIGGEPLRLGKAVEIGHIFKLGTKYSESMGARVLDANGKEV 475

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEK 367
              MG YGIG  R++ A IESS            A      + +      +     A EK
Sbjct: 476 LPIMGCYGIGIERILTAAIESSAAANAGEQYALPAAIAPFAVVVTITNVREADLLAAGEK 535

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I A L   G DV  DD  E+ G +F  A+L+G P ++ +G K +++ +VE+  RLT    
Sbjct: 536 IAADLEAAGVDVLLDDRDERAGVKFKDAELIGVPYRINIGKK-LAEGQVELVDRLTQTTT 594

Query: 428 DMSLEEVINYASHRFSNNR 446
           D+ L+ +  +     + ++
Sbjct: 595 DLPLDAITAHIQSLLAASK 613


>gi|254527233|ref|ZP_05139285.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
 gi|221538657|gb|EEE41110.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
          Length = 638

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 135/445 (30%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   I +   RD      K  L    I + S G+  W P G      +   IRE   
Sbjct: 228 LNNYLKRIEEAEKRDHRKLGKKHSLF--HIQEESPGMIFWHPNGWTIYQVLEKYIREILK 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +   +E+  P      LW +SG ++ +  +M       ++     P +      +F   +
Sbjct: 286 KNDYLEIKTPQAVDKSLWEKSGHWEKFRDDMFT-TASENRTYAIKPMNCPCHIQVFNQGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSY++LP    +     R+E      G+MR R F   DA+ F  T E  +   +      
Sbjct: 345 KSYKDLPIRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIFC-TEEQIQEEVSTFIDLV 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G   I ++  + P     S E                   D    +     D+
Sbjct: 404 FEVYKTFGFDEIIIKLSTRPEKKVGSEE-----------------IWDKSEEALTKALDN 446

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +     A Y    +     L D L    +     ++                AT
Sbjct: 447 KNLKWELQPGEGAFYGPKIEF---SLKDCLNRVWQCGTIQVDFSMPVRLD--------AT 495

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D +      +    +G+      ++   ++ K  IW        +S+         
Sbjct: 496 YVDIDNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIWLAPYQITLLSIT------DR 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             + C K    L   G     D   E+IG +   A L   PL  ++G K      V ++ 
Sbjct: 550 NIEKCLKFNELLINNGYRSTVDIRNEKIGYKIREATLGRVPLIAVIGDKEEEIDSVSLRA 609

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                    +L  +           
Sbjct: 610 LDGRDLGIFNLTNLCKLMDGLIEKR 634


>gi|168027962|ref|XP_001766498.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682407|gb|EDQ68826.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 615

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 151/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +    +E  R D       L L +  I +    G+  W P G      +    ++   
Sbjct: 206 KAYQVQKEEAKRRDHRRLGQDLNLFS--IQEDAGGGLVFWHPKGAMIRHIIEDYWKKMHF 263

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +   DLW  SG YD Y + M       ++     P +      +++  +
Sbjct: 264 ANGYELLYTPHIAKLDLWKTSGHYDFYKENMFDQMQIEEELYQIRPMNCPFHIQVYKDAL 323

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP    ++   +R E      G+ R R F   D + F L  +        +    
Sbjct: 324 RSYRELPMRVAELGTVYRYERSGTLHGLFRVRGFTQDDGHIFCLPDQIRDE-IRGVLDLT 382

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I  + G     +   + P                  +   S +  +    +  +  +D
Sbjct: 383 EMILKQFGFSKFEINLSTRP-----------------EKAVGSDEIWEKATTALKSALED 425

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    DV   K+ D++    + S   ++    F    ++++     
Sbjct: 426 KGWEYGIDEGGGAFYGPKIDV---KIEDAIGRKWQCSTIQVD----FNLPERFNMVY--- 475

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 +   + +     G++     ++    +     +P  +AP +  L+ +  ++   
Sbjct: 476 VDSDTSRKQPIMIHRAIFGSIERFFGILT---ENYAGDFPLWLAPVQARLLPVTDNE--- 529

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C+K+ A L            GE++G     A+    P+  +VG K V    + ++ R
Sbjct: 530 VDYCKKVVAELKAREIRAEV-IFGERLGKLIRNAETQKIPVMAVVGRKEVETETLTVRTR 588

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G   ++++ ++ +      S  
Sbjct: 589 HGGELGNVTVADLADRIQLAISTR 612


>gi|295693387|ref|YP_003601997.1| threonyl-tRNA synthetase [Lactobacillus crispatus ST1]
 gi|295031493|emb|CBL50972.1| Threonyl-tRNA synthetase [Lactobacillus crispatus ST1]
          Length = 645

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 78/433 (18%), Positives = 152/433 (35%), Gaps = 34/433 (7%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      V   I + +   G   +  P L
Sbjct: 239 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVL 296

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y  +M    D  D  M    P +      I++ HI+SYR+LP    
Sbjct: 297 MNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSYRDLPLRVA 356

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++    +  
Sbjct: 357 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQTE-FAKILKLIMDVYKDFDITD 415

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 416 YYFRLS-------------YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGE 462

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G DG++H  
Sbjct: 463 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLTYVGQDGEEHRP 511

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            M     G +  +   I    +     +P  +AP ++ +I +        +  EK+   L
Sbjct: 512 VMIHR--GIVGTMERFIAYLTEIYKGAFPTWLAPVQVEIIPVNL--DAHGEYAEKVRQEL 567

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +K G     D   E++G +   +     P  +++G   +  + V ++   T     MSL+
Sbjct: 568 AKRGFRAEVDTRNEKMGYKIRESQTQKVPYTLVLGDDEMKANGVNVRPYGTDQENSMSLD 627

Query: 433 EVINYASHRFSNN 445
           + I        + 
Sbjct: 628 DFIKEIDADVKSY 640


>gi|257878529|ref|ZP_05658182.1| prolyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257882947|ref|ZP_05662600.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257894712|ref|ZP_05674365.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|293567720|ref|ZP_06679062.1| prolyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|294618726|ref|ZP_06698258.1| prolyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|294620760|ref|ZP_06699967.1| prolyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|257812757|gb|EEV41515.1| prolyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257818605|gb|EEV45933.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257831091|gb|EEV57698.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|291589563|gb|EFF21369.1| prolyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|291595039|gb|EFF26384.1| prolyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|291599740|gb|EFF30750.1| prolyl-tRNA synthetase [Enterococcus faecium U0317]
          Length = 569

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 114/273 (41%), Positives = 160/273 (58%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--D 238
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  + C     D+    E     
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTI-CYSTESDYAANLEMATSY 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +    S  + +E           +     F S+
Sbjct: 240 YVSKKSHETQLELEKVATPNVKSIDEVADFFSV 272



 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 117/231 (50%), Gaps = 6/231 (2%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVHNEKLFDSLPEN 274
           + + +V+  +   D       T  ++       V         +  D+   +  D  P+N
Sbjct: 339 SDDVKVYADRYVQDLANAI--TGANETGFHYKNVNPERDFTVLSYEDLRFVQEGDPSPDN 396

Query: 275 KRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             V    RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+++A++E  
Sbjct: 397 NGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRLLSAIVEQH 456

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D +GI WP  +APF + ++ +   D+       ++   ++K G +V  DD  E+ G +F
Sbjct: 457 SDEQGINWPKGIAPFDLHIVQMNLKDEYQTSLTNELEEAMTKAGYEVLVDDRNERAGVKF 516

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           A +DL+G P+++ VG K V D  VE+K + TG   ++  EE+ N      +
Sbjct: 517 ADSDLIGCPIRITVGKKAV-DGIVEVKIKKTGEMVEVRKEELANTLPILLN 566


>gi|50952758|gb|AAT90291.1| putative threonyl-tRNA synthetase [uncultured proteobacterium
           eBACred25D05]
          Length = 650

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 149/442 (33%), Gaps = 45/442 (10%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      ++ L    + + + G   W P G K    +   +R +Q   G 
Sbjct: 237 LNMLEEAAKRDHRKLGKEMDLF--HMQEEAPGQIFWHPNGWKIYTLLQDYMRRQQEVGGY 294

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-----GPTHEEVMTDIFRSH 121
           +E++ P +    LW ESG +D Y + M  +    + A         P +      ++   
Sbjct: 295 VEVNTPQVVDRKLWEESGHWDKYQEHMFIVEVDEEHAREKSINALKPMNCPCHVQVYNQG 354

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           IKSYR+LP    +     R E      G+MR R F   DA+ F    +    +  K    
Sbjct: 355 IKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIFCQEDQIESET-KKFINF 413

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++  LG     ++    P                      S D  D    +  +   
Sbjct: 414 LSGVYKDLGFPKFAVKFSDRPKNR-----------------AGSDDVWDKAEGALKSATT 456

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  +     A Y    +     L D++  + +     ++    F    +    + A
Sbjct: 457 SAGFDFELNPGEGAFYGPKLEF---VLTDAIGRDWQCGTLQVD----FVLPDR----LDA 505

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            F G DG+ H    +    +G+      ++  +  G+   W         S++       
Sbjct: 506 NFIGEDGQKHRPVMLHRAVLGSFERFIGILIENFAGRLPFWLAPRQVVVASIVT------ 559

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              + C +I   L  VG     D   E+I  +     +   P  + +G++ V D  + ++
Sbjct: 560 DANEYCTEIVDALKLVGIRAESDLRNEKISYKVREHSVAKVPTILAIGNREVEDRAITVR 619

Query: 420 HRLTGIREDMSLEEVINYASHR 441
                  + ++ ++VI      
Sbjct: 620 TLGEKQTKTINFDQVILELQKE 641


>gi|184201017|ref|YP_001855224.1| threonyl-tRNA synthetase [Kocuria rhizophila DC2201]
 gi|183581247|dbj|BAG29718.1| threonyl-tRNA synthetase [Kocuria rhizophila DC2201]
          Length = 718

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 66/448 (14%), Positives = 134/448 (29%), Gaps = 48/448 (10%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    RE   R G   +  
Sbjct: 260 EAERRDHRKLGVELDLFS-FPDELGSGLPVFHPKGGIIRKEMEDYSRERHARAGYEFVYT 318

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-------------RNDKAMIYGPTHEEVMTDIF 118
           P +    L+  SG  D Y   M                  +  +     P +  +   I+
Sbjct: 319 PHITKGHLYEVSGHLDWYRDGMFPPMHVDEERDPDTGELTKPGQDYYLKPMNCPMHNLIY 378

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           RS  +SYR LP   ++    +R E      G+ R R     DA+ +    +         
Sbjct: 379 RSRGRSYRELPLRLFEFGAVYRYEKSGVIHGLTRVRGMTQDDAHIYCTREQMKGEL-TNT 437

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L +    G++   +   +                    +   S +  D    +   
Sbjct: 438 LNFVLSLLKDYGMEDFYLELST----------------KDPNKFVGSDEIWDEATRTLRE 481

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +D            A Y       + +  D++    ++S   ++    F    ++ L 
Sbjct: 482 VAEDSGLELVPDPAGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FNLPERFDLE 534

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             A+      +   V +     G++     V+    +     +P  ++P ++  I +   
Sbjct: 535 YQAS---DGSRRRPVMIHRALFGSVERFMGVLT---EHYAGAFPAWLSPVQVRAIPVA-- 586

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D  ++    L + G  V  D   ++   +   A     P  VI G +      V 
Sbjct: 587 -EAFNDYLDEFAQTLRERGIRVEVDTSSDRFPKKIRTASKDKIPFVVIAGGEDAEAGTVS 645

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            + R       +S  E +   +   +  
Sbjct: 646 FRFRDGSQHNGVSQAEAVELIARHVAER 673


>gi|33861154|ref|NP_892715.1| threonyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|73919818|sp|Q7V287|SYT_PROMP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33639886|emb|CAE19056.1| Threonyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 638

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 139/442 (31%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      K  L    I + S G+  W P G      +   +RE  N+  
Sbjct: 231 YLKRIEEAEKRDHRKLGKKHSLF--HIQEESPGMIFWHPNGWTIYQVLEKYVREILNKND 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P      LW +SG +D + ++M       ++     P +      +F   +KSY
Sbjct: 289 YLEIKTPQAVDKSLWEKSGHWDKFREDMFT-TASENRTYAIKPMNCPCHIQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +     R+E      G+MR R F   DA+ F    +      +        +
Sbjct: 348 KDLPIRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIFCTEEQIQAE-VSTFIDLVFEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P                      S++  D    +     D+   
Sbjct: 407 YKTFGFDEIIIKLSTRPEKR-----------------VGSENIWDKSEEALMKALDNKSL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++                AT+  
Sbjct: 450 KWVLQPGEGAFYGPKIEF---SLKDCLDRVWQCGTIQVDFSMPIRLD--------ATYID 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +      +    +G+      ++   ++ K  IW        +S+           +
Sbjct: 499 LNNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIWLAPYQIILLSIT------DRNIE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C K    ++  G     D   E+IG +   A +   PL  ++G K      V ++    
Sbjct: 553 KCLKFNQLINSKGYRSKVDIRNEKIGYKIREATIGRIPLIAVIGDKEEQFDSVALRALDG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                  L+++    ++     
Sbjct: 613 KNLGIFKLDDLYKLMNNLIEKK 634


>gi|329925255|ref|ZP_08280198.1| proline--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328940088|gb|EGG36421.1| proline--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 575

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 117/232 (50%), Positives = 151/232 (65%), Gaps = 1/232 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  +  +++ P +AE  SH+ MLR G I Q + GIYS+LPLG + L  + AIIR+E
Sbjct: 1   MRQSQLLMTTMRDVPSEAEALSHQWMLRGGYIRQTAAGIYSYLPLGWRVLRKIEAIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A+LW ESGRYD YG E++RL DR+D+  + GPTHEEV+T I R 
Sbjct: 61  MDSAGGQELLMPAVQPAELWKESGRYDVYGAELIRLHDRHDREFVLGPTHEEVITSIVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ K+RDE RPRFG++R REFLMKDAYSFD    G   SY  M+ +
Sbjct: 121 EISSYRKLPVNLYQIQSKYRDERRPRFGLLRGREFLMKDAYSFDRDWGGLDASYRNMYET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL-SHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL    + A++G IGG   +HEF+ LAD GE  V    D     
Sbjct: 181 YERIFRRCGLMFRAVEADAGAIGGQGETHEFMALADIGEDTVVSCSDCRYAA 232



 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/183 (36%), Positives = 95/183 (51%), Gaps = 4/183 (2%)

Query: 261 DVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D  N    +  P         RGIE+GH+F  GTKYS  M+  +  ADG++  + MG YG
Sbjct: 389 DFRNVAEGEPCPRCGAPLQFHRGIELGHVFKLGTKYSDAMNGKYLDADGREKPLIMGCYG 448

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  RV+AA+ E       ++WP SVAPFK+ +I +   D+      E IY  LS  G +
Sbjct: 449 IGVSRVMAAIAEQRISDGRLVWPMSVAPFKVHIIPVAVKDETQMQLAEHIYRELSGAGLE 508

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              DD  E+ G +F  ADL G PL++IVG +  +  +VE      GI+  + +EE I  +
Sbjct: 509 PLLDDRDERAGVKFKDADLAGAPLRIIVG-RGAASGEVEWMG-EDGIKISLPVEEAIQRS 566

Query: 439 SHR 441
              
Sbjct: 567 REE 569


>gi|300780959|ref|ZP_07090813.1| proline--tRNA ligase [Corynebacterium genitalium ATCC 33030]
 gi|300532666|gb|EFK53727.1| proline--tRNA ligase [Corynebacterium genitalium ATCC 33030]
          Length = 611

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 177/386 (45%), Gaps = 17/386 (4%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+YSWLPLG KA+ N+  I+REE 
Sbjct: 17  RLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRAAPGVYSWLPLGLKAVRNIEEIVREEM 76

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L   + +  + R+  YG ++ RL DR    M+ GPTHEE+ T   +  
Sbjct: 77  NAIGAQELLFPALLPREPYEATNRWTEYGDDLFRLQDRKGTDMLLGPTHEEMFTLAVKDL 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T EG   SY     +Y
Sbjct: 137 YSSYKDFPVTLYQIQTKYRDEARPRAGILRGREFVMKDSYSFDMTDEGLSESYAAHRRAY 196

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             IF R+GLK    +A SG +GG  S EF+  +D GE   F      DF    E      
Sbjct: 197 QAIFDRVGLKYEICQATSGAMGGSASEEFLAYSDNGE-DTFVVSTAGDFAANVEAVQT-- 253

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY---FGTKYSLPM 298
           I   +  VE    P A   +    +  +SL +    +   +E   +              
Sbjct: 254 IAPADRPVEGL--PEAVVHETPASETIESLVDWANSAGVNVEDREVTAADTLKCMVVKID 311

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                  DG     Q+    +   R +      +          S   F  S   +K + 
Sbjct: 312 DPRVVSEDGTPVGPQLTGILMPGDRALDEKRLEASLEPAAFELASDEDFAKSSFLVKGYV 371

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDM 384
                        L+  G  V  D  
Sbjct: 372 GP---------RGLNANGVRVLADPR 388



 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 8/193 (4%)

Query: 260 SDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +    K  D  P        ARGIE+GHIF  G KY+  M       +GK     MGSY
Sbjct: 421 IEAAEIKEGDPSPTGNGTLRLARGIELGHIFQLGRKYTEAMDVQILDENGKRAVPTMGSY 480

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R++A + E  HD KG++WP  +AP+++ L      D    +A E++       G 
Sbjct: 481 GIGVTRMLAVIAEQLHDDKGLVWPVEIAPYQVHLAVAN-KDAAAMEASERLVGEFEAAGI 539

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---TGIREDMSLEE 433
           DV  DD      G +F  A+LLG P  VI+G +  +D  +E++ R     G   ++  +E
Sbjct: 540 DVLVDDRPKVSPGVKFKDAELLGMPFIVILG-RSFADGIIELRIRGGENGGEILEVPADE 598

Query: 434 VINYASHRFSNNR 446
           +++      +  R
Sbjct: 599 IVSRVQELIAAAR 611


>gi|295839903|ref|ZP_06826836.1| threonine-tRNA ligase [Streptomyces sp. SPB74]
 gi|197696732|gb|EDY43665.1| threonine-tRNA ligase [Streptomyces sp. SPB74]
          Length = 658

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 68/439 (15%), Positives = 133/439 (30%), Gaps = 36/439 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     ++L L +    +   G+  + P G      +    R      G   +  
Sbjct: 254 EAEKRDHRKLGNELDLFS-FPEEVGPGLAVFHPKGGIIRRAMEDYSRRRHEEEGYEFVYS 312

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+ +SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 313 PHTTKGALFQKSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 372

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ RSR F   DA+ +    + ++   +K     L +    G
Sbjct: 373 RLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIYCTKEQMAEEL-DKTLTFVLNLLRDYG 431

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +                  E +   S +  +    +     +         
Sbjct: 432 LDDFYLELST----------------KDEKKFVGSDEVWEEATSTLAEVAEKQGLPLVPD 475

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++    F    ++ L  +A       + 
Sbjct: 476 PGGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FNLPERFDLSYTAA---DGSRQ 525

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +     G++    AV+    +      P  +AP +   I +           ++  
Sbjct: 526 RPVMIHRALFGSIERFFAVLL---EHYAGAMPPWLAPVQAVGIPVG---DAHVPYLKEFA 579

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A   K G  V  D   +++  +         P  +IVG   ++   V  +HR       +
Sbjct: 580 AEARKQGLRVDVDASSDRMQKKIRNHQKQKTPFMIIVGDDDMNAGTVSFRHRDGSQENGI 639

Query: 430 SLEEVINYASHRFSNNRPV 448
              E +            V
Sbjct: 640 PKGEALAKLRDVVERRVQV 658


>gi|257884339|ref|ZP_05663992.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|261207398|ref|ZP_05922084.1| prolyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289566680|ref|ZP_06447097.1| prolyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|294613940|ref|ZP_06693875.1| prolyl-tRNA synthetase [Enterococcus faecium E1636]
 gi|257820177|gb|EEV47325.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|260078289|gb|EEW65994.1| prolyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289161539|gb|EFD09422.1| prolyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|291593215|gb|EFF24789.1| prolyl-tRNA synthetase [Enterococcus faecium E1636]
          Length = 569

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 114/273 (41%), Positives = 160/273 (58%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--D 238
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  + C     D+    E     
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTI-CYSTESDYAANLEMATSY 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +    S  + +E           +     F S+
Sbjct: 240 YVSKKSHETQLELEKVATPNVKSIDEVADFFSV 272



 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 118/231 (51%), Gaps = 6/231 (2%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVHNEKLFDSLPEN 274
           + + +V+  +   D       T  ++       V         +  D+   +  D  P+N
Sbjct: 339 SDDVKVYADRYVQDLANAI--TGANETGFHYKNVNPERDFTVLSYEDLRFVQEGDPSPDN 396

Query: 275 KRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             V    RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+++A++E  
Sbjct: 397 NGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRLLSAIVEQH 456

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D +GI WP  +APF + ++ +   D+   +   ++   ++K G +V  DD  E+ G +F
Sbjct: 457 SDEQGINWPKGIAPFDLHIVQMNLKDEYQTNLTNELEEAMTKAGYEVLVDDRNERAGVKF 516

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           A +DL+G P+++ VG K V D  VE+K + TG   ++  EE+ N      +
Sbjct: 517 ADSDLIGCPIRITVGKKAV-DGIVEVKIKKTGEMVEVRKEELANTLPILLN 566


>gi|254453851|ref|ZP_05067288.1| threonyl-tRNA synthetase [Octadecabacter antarcticus 238]
 gi|198268257|gb|EDY92527.1| threonyl-tRNA synthetase [Octadecabacter antarcticus 238]
          Length = 649

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 149/443 (33%), Gaps = 45/443 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  + +L+E   RD      ++ L    + + + G   W P G      +   +R +Q  
Sbjct: 235 RAHMNMLEEAAKRDHRKLGREMDLF--HMQEEAPGQIFWHPNGWLIYTQLQDYMRRKQRA 292

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-----GPTHEEVMTDIF 118
            G +E++ P +    LW +SG ++ Y + M  +    D A         P +      I+
Sbjct: 293 GGYVEVNTPQVVDRKLWEQSGHWEKYQEHMFVVEVDEDHAREKSVNALKPMNCPCHVLIY 352

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   DA+ F  T +  +      
Sbjct: 353 NQGLKSYRDLPMRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIFC-TEDQIEEETLTY 411

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++  LG ++  ++    P     S E    A+T                 +   
Sbjct: 412 IEFLTGVYKDLGFENFKVKFSDRPDTRAGSDEVWDKAET-----------------ALLA 454

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     +     A Y    +     L D++  + +     ++    F    +    
Sbjct: 455 ATRKAGIEPELNPGEGAFYGPKLEF---VLTDAIGRDWQCGTHQVD----FVLPDR---- 503

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A + GADG+ H    +    +G+      ++   H GK   W         S+I    
Sbjct: 504 LDANYIGADGEKHRPVMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVASII---- 559

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++ A L   G     D   E+I  +     L   P+ +  G++ V +  V
Sbjct: 560 --SDADDYVREVVAALQAKGVRAEADIRNEKINYKVREHSLGKVPVILACGAREVEERTV 617

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
            ++          +L  ++    
Sbjct: 618 SVRRLGDKQTSVTTLAVIVEDLQ 640


>gi|69246859|ref|ZP_00604151.1| Prolyl-tRNA synthetase, bacterial [Enterococcus faecium DO]
 gi|257889274|ref|ZP_05668927.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|258615945|ref|ZP_05713715.1| prolyl-tRNA synthetase [Enterococcus faecium DO]
 gi|260560114|ref|ZP_05832292.1| prolyl-tRNA synthetase [Enterococcus faecium C68]
 gi|293560203|ref|ZP_06676705.1| prolyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|314937502|ref|ZP_07844835.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|314942161|ref|ZP_07849015.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|314947499|ref|ZP_07850914.1| prolyl-tRNA synthetase [Enterococcus faecium TX0082]
 gi|314951486|ref|ZP_07854535.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|314992576|ref|ZP_07857994.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|314995489|ref|ZP_07860589.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|68195040|gb|EAN09503.1| Prolyl-tRNA synthetase, bacterial [Enterococcus faecium DO]
 gi|257825634|gb|EEV52260.1| prolyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|260073949|gb|EEW62273.1| prolyl-tRNA synthetase [Enterococcus faecium C68]
 gi|291605875|gb|EFF35307.1| prolyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|313590323|gb|EFR69168.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|313592868|gb|EFR71713.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|313596326|gb|EFR75171.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|313599084|gb|EFR77929.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|313643143|gb|EFS07723.1| prolyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|313646049|gb|EFS10629.1| prolyl-tRNA synthetase [Enterococcus faecium TX0082]
          Length = 569

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 114/273 (41%), Positives = 160/273 (58%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--D 238
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  + C     D+    E     
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTI-CYSTESDYAANLEMATSY 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +    S  + +E           +     F S+
Sbjct: 240 YVSKKSHETQLELEKVATPNVKSIDEVADFFSV 272



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVHNEKLFDSLPEN 274
           + + +V+  +   D       T  ++       V         +  D+   +  D  P+N
Sbjct: 339 SDDVKVYADRYVQDLANAI--TGANETGFHYKNVNPERDFTVLSYEDLRFVQEGDPSPDN 396

Query: 275 KRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             V    RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+++A++E  
Sbjct: 397 NGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRLLSAIVEQH 456

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D +GI WP  +APF + ++ +   D+   +   ++   ++K G +V  DD  E+ G +F
Sbjct: 457 SDEQGINWPKGIAPFDLHIVQMNLKDEYQTNLTNELEEAMTKAGYEVLVDDRNERAGVKF 516

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           A +DL+G P+++ VG K V D  VE+K + TG   ++  EE++N      +
Sbjct: 517 ADSDLIGCPIRITVGKKAV-DGIVEVKIKKTGEMVEVRKEELVNTLPILLN 566


>gi|313901629|ref|ZP_07835066.1| prolyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
 gi|313468110|gb|EFR63587.1| prolyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
          Length = 586

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 119/237 (50%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++  +P L+++P +AEIASH+LMLR G+I + + GIY WLPLG++A+  V  I+REE
Sbjct: 1   MRWTRLLIPTLRDDPAEAEIASHRLMLRAGLIRRVTAGIYEWLPLGRRAVVKVETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR G +E+ +P +Q A+LW E+GR+  YG+EM RL DR+ +    GPTHEE++TD+ R+
Sbjct: 61  MNRKGGLEVGLPIVQPAELWRETGRWAQYGEEMWRLKDRHGREYCLGPTHEEIITDLVRA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQIQ K+RDE+RPRFGVMR+REF+MKDAYSFD+  EG + SY  M  +
Sbjct: 121 TVSSYRQLPLLLYQIQNKYRDEIRPRFGVMRAREFIMKDAYSFDVDAEGLERSYQAMDDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL   P+ A+ G IGG  +HEF+ LAD GE  +        +    E  
Sbjct: 181 YRRIFSRCGLVFRPVAADPGAIGGSGTHEFMALADYGEALIVYCDAC-GYAANVEKA 236



 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 107/185 (57%), Gaps = 2/185 (1%)

Query: 261 DVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+      D+ PE      +ARGIEVG IF   TKYS  +  TFK ADG++  + MG YG
Sbjct: 386 DLRLVGAGDACPECGTPMAAARGIEVGQIFKLWTKYSEALGCTFKDADGQERPMVMGCYG 445

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R VAAVIE  HD KGIIWP SVAP+ + ++ +   +   R A E++Y +L + G +
Sbjct: 446 IGITRTVAAVIEQHHDEKGIIWPMSVAPYHVVVVPVNYAEPDQRQAAERVYGQLLEAGVE 505

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              DD  E+ G +F  ADL+GFPL+V VG + + + KVE+  R TG    + +++     
Sbjct: 506 AVLDDRDERPGVKFNDADLIGFPLRVTVGPRGLVEGKVEVVERATGRATPVPVDQAAAEV 565

Query: 439 SHRFS 443
           + R  
Sbjct: 566 ARRVR 570


>gi|163846770|ref|YP_001634814.1| threonyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222524584|ref|YP_002569055.1| threonyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
 gi|163668059|gb|ABY34425.1| threonyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222448463|gb|ACM52729.1| threonyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
          Length = 594

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 142/446 (31%), Gaps = 39/446 (8%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E   RD      +L L          G+  + P G+     +   +RE Q R
Sbjct: 182 EAYLHRLEEARKRDHRRLGKELGLF-FFSDDIGPGLPIFTPKGEIIRHEMEKFVREVQTR 240

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEE-VMTDIFRSH 121
            G   +    +    L+ +SG YD+Y   M     +  D      P +    MT   +  
Sbjct: 241 YGYQHVWTGNVVKEQLYRKSGHYDNYRDSMFPPMVESEDLVFRLKPMNCPSHMTLYNQLG 300

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+LP  F +    +R E      G+ R R     D + F    +  +  ++     
Sbjct: 301 VISYRDLPLRFAEFATLYRYEDSGALSGLTRVRALTQDDCHIFCRPDQIQEE-FSLALQV 359

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +          +R                     E +     +  +    +  +  +
Sbjct: 360 IREVLGTYQFTDYKVRLSLRG---------------SEGKYVQDDEKWELATAALRSALE 404

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   VE   A Y   +D       D L    ++S   ++       G         
Sbjct: 405 ANGVEYFEVEGEAAFYGPKADFL---ARDVLGREWQLSTIQVDFIQPARLG--------C 453

Query: 301 TFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G D K H   +      G       ++    +  G  +P  +AP +  +I I     
Sbjct: 454 EYIGEDDKPHTPVVLHRAVTGTTERFMGILI---EHYGGAFPLWLAPVQAVVIPITDK-- 508

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   ++  RL   G  V  DD  +++  +   A L   P  +I+G++  +   V ++
Sbjct: 509 -QMEFARQVRQRLFMAGLRVELDDNRDRMQGKIRRAQLQKIPYMLIIGAREEAADSVAVR 567

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       M ++  +  A       
Sbjct: 568 TRAGEDLGAMPVDAFLARALEEIRTR 593


>gi|209969467|dbj|BAG80638.1| hypothetic protein [Streptococcus parauberis]
          Length = 395

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 69/421 (16%), Positives = 147/421 (34%), Gaps = 31/421 (7%)

Query: 31  MI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI  +  +G+  WLP G      +   I +++  +G   +  P + S +L+  SG ++ Y
Sbjct: 1   MISQEVGQGLPFWLPNGATIRRTLERYITDKELASGYQHVYTPPMASVELYKTSGHWEHY 60

Query: 90  GKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
            ++M    D  D +  +  P +      ++++H+ SYR LP    ++ +  R E      
Sbjct: 61  QEDMFPTMDMGDGEEFVLRPMNCPHHIQVYKNHVHSYRELPIRIAELGMMHRYEKSGALS 120

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            ++    +  +     +TPE  +  + +     + ++    L     R            
Sbjct: 121 GLQRVREMTLNDGHLFVTPEQIQEEFQRALQLIIDVYEDFNLTDYRFRLS---------- 170

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                      + + + +  +          D++       E   A Y    D+   ++ 
Sbjct: 171 ---YRDPKDTHKYYDNDEMWENAQAMLKAALDEMGVDYFEAEGEAAFYGPKLDI---QVK 224

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            +L   + +S   ++    F    ++       + GADG++H   M   G+ +       
Sbjct: 225 TALGNEETLSTIQLD----FLLPERFD----LKYIGADGEEHRPVMIHRGVISTMERFTA 276

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I             +          I   ++   D   ++   L   G     DD  E++
Sbjct: 277 ILIETYKGAFPTWLAPHQV----TVIPISNEAHIDYAWEVAKTLRDRGIRADVDDRNEKM 332

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF-SNNRP 447
             +   +     P Q+IVG K + D  V ++   +      S+EE ++         +RP
Sbjct: 333 QYKIRASQTSKIPYQLIVGDKEMEDKAVNVRRYGSKATHTESIEEFVDNILADIARKSRP 392

Query: 448 V 448
           V
Sbjct: 393 V 393


>gi|332830447|gb|EGK03075.1| threonyl-tRNA synthetase [Dysgonomonas gadei ATCC BAA-286]
          Length = 650

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 153/445 (34%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      +L L         KG+  WLP G +    +   +++ Q + 
Sbjct: 230 EYLIMLEEAKKRDHRKIGKELELFA-FSENVGKGLPLWLPRGTQLRLKLEDFLKKIQRKF 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              ++  P + S  L+V SG Y+ YGK+  +        +  +  P +     +I++   
Sbjct: 289 DYQQVMTPHIGSKILYVTSGHYEKYGKDSFQPIHTPEEGEEFLLKPMNCPHHCEIYKIIP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    +R E      G+ R R F   DA+ F  TPE  K  + K+    
Sbjct: 349 RSYKDLPLRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPEQLKAEFLKVMDIV 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             IF  L  ++   +                  D    + +   D           +  +
Sbjct: 408 FIIFKALDFENFEAQISLR--------------DPENREKYIGSDENWEKAERAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D+L    ++    ++                 
Sbjct: 454 EKGLPAKVELGEAAFYGPKLDFM---VKDALGRRWQLGTIQVDYNLP--------ERFEL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GAD + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYTGADNQKHRPVMIHRAPFGSMERFIAVLIEHTAGKFPLW------LAPDQVVILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++ +   + G     DD  E+IG +    +L   P  +IVG K     +V ++
Sbjct: 557 KFNDYAHRVNSYFKQQGISSQVDDRNEKIGRKIRDNELKRIPYLLIVGEKEAETEEVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M         +     
Sbjct: 617 KQGEGDKGSMKFTNFAAQLNEEVEK 641


>gi|125975428|ref|YP_001039338.1| prolyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|152016597|sp|A3DJL6|SYP_CLOTH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|125715653|gb|ABN54145.1| prolyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
          Length = 572

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 117/267 (43%), Positives = 159/267 (59%), Gaps = 6/267 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F   L+E P +AEIASH+LMLR G++ + + GIYS+LPLG +    +  I+REE
Sbjct: 1   MRVSNMFFQTLREVPAEAEIASHQLMLRAGLMRKLASGIYSFLPLGYRVFRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +  L  A+ +  SGR++ +G EM RL DRN +    GPTHEE+ T+  +S
Sbjct: 61  MDRAGAQELIMSALLPAESYQASGRWEVFGAEMFRLKDRNGRDFCLGPTHEEIFTETVKS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SYR+LP   YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD    G   SY KM+ +
Sbjct: 121 VTRSYRSLPLILYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDRDEAGLDISYKKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS------ 234
           Y RIF RLGL  I + A++G +GG  S EF+V +  GE+++   +               
Sbjct: 181 YCRIFDRLGLDYIIVDADTGAMGGSDSQEFMVKSAVGESRIAYCEACGYAANDEKAECVP 240

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSD 261
           E    D        +E+   P   T +
Sbjct: 241 EKCCDDKECCGELGLEKVATPDVRTIE 267



 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+   K  D+ P+         GIEVGHIF  GTKYS  +   +    GK+  + MG 
Sbjct: 382 VKDIRTIKEGDACPKCGAPVKVEFGIEVGHIFKLGTKYSEALDCIYLDETGKERPMIMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +AAVIE ++D  GIIWP S+AP+ + +I +   D V  +  EKIY +L ++G
Sbjct: 442 YGIGINRSMAAVIEQNNDENGIIWPISIAPYHVIVIPVNTTDSVQMELAEKIYTQLGEMG 501

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G +F  ADL+G P+++ VG +   +  VE K R       +  EE I 
Sbjct: 502 IEVLLDDRDERPGVKFKDADLIGIPIRITVGKR-AGEGIVEYKLRREKDFAAIPYEEAIA 560

Query: 437 YASHRFSN 444
            A    + 
Sbjct: 561 KAKKEVAE 568


>gi|126725645|ref|ZP_01741487.1| threonyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
 gi|126704849|gb|EBA03940.1| threonyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
          Length = 649

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 78/433 (18%), Positives = 140/433 (32%), Gaps = 44/433 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD       + L    + + + G   W P G +    +   +R +Q   G +E+
Sbjct: 241 LEEAAKRDHRKLGRDMDLF--HMQEEAPGQVFWHPNGWRIYTTLQDFMRRKQVAGGYVEV 298

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           + P +    LW  SG ++ Y + M  +       R        P +      IF   +KS
Sbjct: 299 NTPQVVDRKLWEASGHWEKYQENMFIVEVDEEHAREKAVNALKPMNCPCHVQIFNVGLKS 358

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +     R E      G+MR R F   D + F       +            
Sbjct: 359 YRDLPIRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIFCE-ESQIEEETAIYIEFLTS 417

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I+  LG ++  ++    P     S E    A+T                 +         
Sbjct: 418 IYKDLGFENFRVKFSDRPEVRAGSDEVWDRAET-----------------ALLNATRAAG 460

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               +     A Y    +     L D++  + +     ++    F    +    + A + 
Sbjct: 461 IEPEMNPGEGAFYGPKLEF---VLTDAIGRDWQCGTHQVD----FVLPER----LDANYV 509

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG  H    +    +G+      ++   H GK   W         S++          
Sbjct: 510 GQDGAKHRPVMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIVT------DAN 563

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +++ A L   G     D   E+I  +     L   P+ + VG K V++  V ++   
Sbjct: 564 DYAQEVVAELRAAGVLAEADIRNEKINYKVREHSLGKVPVILAVGMKEVAERTVSVRRLG 623

Query: 423 TGIREDMSLEEVI 435
                   L EV+
Sbjct: 624 QKQSTVQELGEVV 636


>gi|315645695|ref|ZP_07898819.1| prolyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315279173|gb|EFU42483.1| prolyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 576

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 119/232 (51%), Positives = 153/232 (65%), Gaps = 1/232 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  +  +++ P +AE  SH+ MLR G I Q + GIYS+LPLG + L  +  IIR+E
Sbjct: 1   MRQSQLLMTTMRDMPSEAEALSHQWMLRGGYIRQTAAGIYSYLPLGWRVLRKIEGIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA EM +P +Q A+LW ESGRYD YG E++RL DR+D+  + GPTHEEV+T I R 
Sbjct: 61  MDAAGAQEMLMPAVQPAELWKESGRYDVYGPELIRLHDRHDREFVLGPTHEEVITSIVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ K+RDE RPRFG++R REFLMKDAYSFD   EG   SY  M+ +
Sbjct: 121 EISSYRKLPVNLYQIQSKYRDERRPRFGLLRGREFLMKDAYSFDRDWEGLDVSYRSMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL-SHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL    + A++G IGG   +HEF+ LAD GE  V   +D     
Sbjct: 181 YERIFERCGLTFRAVEADAGAIGGQGETHEFMALADIGEDTVVSCRDCRYAA 232



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 4/180 (2%)

Query: 261 DVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D  N K  +  P         RGIE+GH+F  GTKYS  M+  +  +DG++  + MG YG
Sbjct: 388 DFRNVKEGEPCPRCGAPLQFHRGIELGHVFKLGTKYSEVMNGMYLDSDGREKPLIMGCYG 447

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  RV+AA+ E    G+ ++WP SVAPF++ +I +   D+   +  E IY  L K G +
Sbjct: 448 IGVSRVMAAIAEQRISGERLVWPMSVAPFQVHVIPVAVKDEAQMNLAEHIYKELIKAGLE 507

Query: 379 VFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
              DD  E+ G +F  A+   G P ++I+G +  +  +VE      G++ ++     I  
Sbjct: 508 PLLDDRDERAGVKFKDAESRHGAPQRLIIG-RGAASGEVEWDRVEDGVKVNLPAAAAIQR 566


>gi|42519522|ref|NP_965452.1| threonyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
 gi|73919800|sp|Q74IC0|SYT_LACJO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|41583811|gb|AAS09418.1| threonyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
          Length = 643

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 154/434 (35%), Gaps = 36/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      V   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIVDKEVADGYEHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y  +M    D  D  M    P +      I++ HI+SYR LP    
Sbjct: 296 MNVDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++    +  
Sbjct: 356 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQIREE-FAKVLKLIMDVYKDFDITD 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + + + +  +          DD+       E  
Sbjct: 415 YYFRLS-------------YRDPKNTDKYYANDEMWETSQSMLKAAMDDLGLDYVEAEGE 461

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G DG++H  
Sbjct: 462 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLTYVGQDGEEHRP 510

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G M    A +   + G    W        +    I  +++   +  +K+ A 
Sbjct: 511 VMIHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PVQAEIIPVNEEAHGEYADKVRAE 565

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+K G     D   E++G +   +     P  +++G + ++ + V ++   T  +   SL
Sbjct: 566 LAKRGFRAEVDHRNEKLGYKIRESQTQKVPYTLVLGDEEMNANGVNVRRYGTEEQISKSL 625

Query: 432 EEVINYASHRFSNN 445
           ++ I        + 
Sbjct: 626 DDFIAEIDADVKSY 639


>gi|292670562|ref|ZP_06603988.1| proline-tRNA ligase [Selenomonas noxia ATCC 43541]
 gi|292647728|gb|EFF65700.1| proline-tRNA ligase [Selenomonas noxia ATCC 43541]
          Length = 570

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 116/286 (40%), Positives = 164/286 (57%), Gaps = 2/286 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +  + P L+  P +AEIASH+LM R G+I + + G+Y++LPL  + +  +  IIR E
Sbjct: 1   MRATNLYAPTLRNTPAEAEIASHRLMYRAGLIRKSAGGMYTYLPLAWRTIRKIEEIIRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+ +P LQ ++LW ESGR+ +YG EM+R+ DR+D+    GPTHEE++T + R 
Sbjct: 61  MEAVGGQEIMMPILQPSELWEESGRWGAYGAEMIRIKDRHDREFCMGPTHEEMITALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE RPRFG+MRSREF+M+D YSFD   EG   SY KM+ +
Sbjct: 121 ELRSYKQLPVLLYQIQDKFRDERRPRFGIMRSREFIMQDLYSFDEDIEGMNESYRKMYAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP--IPSENTD 238
           Y  IF R GL    + A+SG IGG  S EF VLA  GE+++ C            +    
Sbjct: 181 YSNIFTRCGLDFRVVEADSGAIGGGRSEEFTVLAPEGESRIACCDACSYAASDEKAALRP 240

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            +        +E+   P   T  +  E L   + +  +  A   E 
Sbjct: 241 INAPAETELPLEKVATPGTHTIALLAEYLKIPVEKTIKAVAYQTED 286



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/218 (31%), Positives = 102/218 (46%)

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
             M   +   N      +++N   +      A    V                +RGIE G
Sbjct: 351 MRMHNAVSGANEADFHFLNVNPKRDFGEVTVADIRLVAEGDECPVCGGGHLHISRGIEAG 410

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            IF  GTKYS  M ATF  A GK   +QMG YGIG  R +AA IE +HD  GIIWP ++A
Sbjct: 411 QIFALGTKYSEAMDATFLDAAGKAQPLQMGCYGIGVGRTMAAAIEQNHDDSGIIWPRAIA 470

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P+++ ++ + A         E++Y  L   G D   DD  E+ G +F   DL+G+P+++ 
Sbjct: 471 PYEVVVVAVNAKVPEQLAYAEEVYEELRAAGVDALLDDRRERAGVKFNDCDLIGYPVRIA 530

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           VG K +    +E+K R TG   + + +  +       +
Sbjct: 531 VGPKTIESGSIEVKLRRTGELVNFARDTYLKGVQDMLA 568


>gi|291443408|ref|ZP_06582798.1| threonyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|291346355|gb|EFE73259.1| threonyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
          Length = 658

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 67/442 (15%), Positives = 141/442 (31%), Gaps = 38/442 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD     ++L L +    +   G+  + P G      +    R      G   +
Sbjct: 252 LEEAAKRDHRKLGNELDLFS-FPDEIGPGLAVFHPKGGVIRRAMEDYSRRRHEEEGYEFV 310

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             P      L+ +SG  D Y   M      +D       P +  +   IF +  +SYR L
Sbjct: 311 YSPHATKGKLFEKSGHLDWYADGMYPPMQLDDGVDYYLKPMNCPMHNLIFDARGRSYREL 370

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P   ++    +R E      G+ RSR F   DA+ +    + ++   ++     L +   
Sbjct: 371 PLRLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIYCTKEQMAEEL-DRTLTFVLNLLRD 429

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            GL    +   +                    +   S +  +    +     +       
Sbjct: 430 YGLTDFYLELST----------------KDPEKYVGSDETWEEATATLQQVAEKQGLPLV 473

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                 A Y       + +  D++    ++S   ++    F    ++       + G DG
Sbjct: 474 PDPGGAAFYGPKI---SVQCKDAIGRTWQMSTVQLD----FNLPERFD----LEYTGPDG 522

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                  +     G++    AV+    +     +P  +AP +   I I           +
Sbjct: 523 SKQRPVMIHRALFGSIERFFAVLL---EHYAGAFPVWLAPVQAVGIPIG---DAHIPYLQ 576

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +  A+  K G  V  D   +++  +         P  +I G + +++  V  ++R     
Sbjct: 577 EFAAKARKQGLRVDVDASSDRMQKKIRNQQKNKVPFMIIAGDEDMANGAVSFRYRDGSQE 636

Query: 427 EDMSLEEVINYASHRFSNNRPV 448
             + ++E I   +    +   V
Sbjct: 637 NGIPVDEAIAKIAKAVEDRVQV 658


>gi|227495497|ref|ZP_03925813.1| threonine--tRNA ligase [Actinomyces coleocanis DSM 15436]
 gi|226831044|gb|EEH63427.1| threonine--tRNA ligase [Actinomyces coleocanis DSM 15436]
          Length = 665

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 68/456 (14%), Positives = 135/456 (29%), Gaps = 50/456 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  + P G      +    R+   + G
Sbjct: 243 YLHRLSEAEKRDHRKLGTELDLFS-FPDEIGSGLACFHPKGGIIRMEMEEYSRKRHVQAG 301

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLR-------------LADRNDKAMIYGPTHEE 112
              +  P +    L+ +SG    Y   M                  +  +     P +  
Sbjct: 302 YDFVYSPHITKGALFEKSGHLSWYKDGMYPALSIDEERNPETGEITKAGQDYYLKPMNCP 361

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSK 171
           +   IF S  +SYR LP   ++    +R E      G+ R R F   DA+ +    +   
Sbjct: 362 MHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLARGRGFTQDDAHIYCTREQMKD 421

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                +    L +    GL    +   +                  E +        +  
Sbjct: 422 EL-TSLLTFVLDLLKDYGLNDFYLELST----------------KNEEKFVGDDATWEEA 464

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
             +     +             A Y       + +  D++    ++S   ++    F   
Sbjct: 465 TRTLAEVAEASGLQLVPDPGGAAFYGPKI---SVQAKDAIGRTWQMSTIQLD----FNLP 517

Query: 292 TKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++       +   DG       +     G++    AV+    +     +P  +AP ++ 
Sbjct: 518 ERF----ELEYTAPDGTRQRPVMIHRALFGSIERFFAVLT---EHYAGAFPAWLAPVQVR 570

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            I +    +   D  E+I  +L   G  V  D   ++ G +   A     P  +I G   
Sbjct: 571 CIPVA---EKFEDYLEEIAKQLRAEGVRVEIDRSDDRFGKKIRNASKDKVPFTLIAGGDD 627

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           V  + V  + R       + + E +          R
Sbjct: 628 VDANAVSFRLRDGSQDNQVPVAEAVERILTVIRERR 663


>gi|301300275|ref|ZP_07206484.1| proline--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852116|gb|EFK79791.1| proline--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 570

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 111/282 (39%), Positives = 163/282 (57%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DAE+ SH+LMLR G I Q + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MKQSQMLIPTLKEIPSDAEVVSHQLMLRGGYIKQITAGMYAYLPLAYRVMKKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A+EM VP +  A+LW ESGRY++YG  + +L DR+++  I GPTHEE  T I R 
Sbjct: 61  MDRIDAVEMLVPAVVPAELWQESGRYETYGPTLFKLKDRHERDFILGPTHEETFTTIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ+K+RDE RPRFG++R REFLM D YSF +     +  +N    +
Sbjct: 121 AIKSYKKLPLYLYQIQMKYRDENRPRFGLLRGREFLMLDGYSFHVDDASMEKVFNDTDKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL    + A+SG +GG+ S EF  +A+ GE  +  S    D+    E     
Sbjct: 181 YQRIFERCGLDFRGIIADSGAMGGNRSKEFQAIAEVGEDTIAYSDS-SDYAANIEMAKNL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            I   +    +     A  +     ++ + L  + +   + +
Sbjct: 240 RIPKQSHETPKDLEKVATPNAKTIVEVAEFLGTDTQNEIKTL 281



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 1/173 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E      RGIE+GHIF  GT+YS  + A     +G+   ++MG YGIG  R+++A++E 
Sbjct: 395 GEGVLKFTRGIEIGHIFQLGTRYSESLGADVLDENGRQVPMRMGCYGIGVSRLLSAIVEQ 454

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            +D  GI WP  +APF I ++ +   +   R+  EK+ A L   G  V  DD  E+ G +
Sbjct: 455 HNDENGIAWPREIAPFDIHVVPVNVKNDTQRELSEKVTAMLEDAGYQVLVDDRKERAGVK 514

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           FA +DL+G P+++ VG K   +  VEIK R  G + ++ LEE++N     F+ 
Sbjct: 515 FADSDLIGLPIRITVGKK-ADEGIVEIKLRQNGEKIEVKLEELLNSVKILFNE 566


>gi|309805191|ref|ZP_07699243.1| threonine--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
 gi|308165425|gb|EFO67656.1| threonine--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
          Length = 461

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 154/434 (35%), Gaps = 36/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      +   I +++   G   +  P L
Sbjct: 56  RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTPVL 113

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y ++M    D  D  M    P +      I+  HI+SYR LP    
Sbjct: 114 MNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIRIA 173

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++    +  
Sbjct: 174 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVELDQVQSE-FAKILKLIMEVYRDFDITD 232

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 233 YYFRLS-------------YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEAEGE 279

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++    + ++ G DG++H  
Sbjct: 280 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----NLSYVGKDGEEHRP 328

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G M    A +   + G    W        + +  I  ++    +  + +  +
Sbjct: 329 VMVHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PLQVKIIPVNNDAHGEYAQNVKDQ 383

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K+G     D   E++G +   A     P  +++G   +  + V ++   +  +E  +L
Sbjct: 384 LMKLGFRAEVDFRNEKLGYKIREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESKAL 443

Query: 432 EEVINYASHRFSNN 445
            E ++  S   ++ 
Sbjct: 444 SEFVSELSADVASY 457


>gi|296084987|emb|CBI28402.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 148/448 (33%), Gaps = 37/448 (8%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   +E  R D       L L +  I  +   G+  W P G      +    ++   
Sbjct: 268 KAYLHFKEEAKRRDHRRLGQDLDLFS--IQDEAGGGLVFWHPKGAIVRRIIEDSWKKIHI 325

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +  ADLW  SG  D Y + M       D+     P +      I++  +
Sbjct: 326 EHGYDLLYTPHVARADLWKTSGHLDFYRENMYSQITIEDELYQLRPMNCPYHILIYKRKL 385

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+ P    ++   +R EL     G+ R R F   DA+ F L  +        +    
Sbjct: 386 HSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDE-IRGVLDLT 444

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I  + G     +   + P                  +   + D  +    +     DD
Sbjct: 445 EEILLQFGFSKYEVNLSTRP-----------------EKAVGADDIWEKATSALRDALDD 487

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG---IEVGHIFYFGTKYSLPM 298
                 I E   A Y    D+   K+ D+L    + S      +++              
Sbjct: 488 KGWSYRIDEGGGAFYGPKIDL---KIEDALGRKWQCSTIQANRLDLSFTKEVDFNLPQRF 544

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+  ++ +      +    +G++     V+    +     +P  ++P +  ++ +   
Sbjct: 545 DITYVDSNSEKQRPIMIHRAVLGSLERFFGVLI---EHYAGDFPLWLSPIQARVLPVT-- 599

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                + C ++  +L   G        GE++      ++    PL  +VG K V    V 
Sbjct: 600 -DTQLEYCNEVTNKLKANGIRAEV-CHGERLPKLIRNSEKQRIPLMAVVGPKEVETQTVT 657

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R  G    M +E+ I+       N 
Sbjct: 658 VRSRFGGELGTMIVEDFISRTKSATENR 685


>gi|169351009|ref|ZP_02867947.1| hypothetical protein CLOSPI_01786 [Clostridium spiroforme DSM 1552]
 gi|169292071|gb|EDS74204.1| hypothetical protein CLOSPI_01786 [Clostridium spiroforme DSM 1552]
          Length = 606

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 68/432 (15%), Positives = 150/432 (34%), Gaps = 39/432 (9%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD +    +L L   M+ +++ G+  +LP G    + +     EE  + G + +  P + 
Sbjct: 211 RDHKKIGKELGLF--MMSEYAPGMPIFLPKGMILRNTLEQFWYEEHTKEGYVFIKTPIMM 268

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           S +LW  SG + +Y  +M      +D+     P +      ++++ + SY++LP    ++
Sbjct: 269 SRELWETSGHWANYKDDMYTSM-VDDREFAIKPMNCPGSLLVYKNGLHSYKDLPLRMGEL 327

Query: 136 QLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               R E      G+ R R F   DA+ F +TP+  +    K+     R+++ L L    
Sbjct: 328 GQVHRHEASGALNGLFRVRTFTQDDAHIF-MTPDQIESEIIKLINFIDRVYNSLNLSYEI 386

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               + P                E +        +    +             I     A
Sbjct: 387 -ELSTRP----------------EEKYIGDLAIWEKSEAALAAACKAAGKDYKINPGDGA 429

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQ 313
            Y    D H   + DSL    +     +++                T+    G+    V 
Sbjct: 430 FYGPKLDFH---VKDSLGRVWQCGTIQLDMNLP--------ERFDITYIDDKGEKARPVM 478

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +     G++     ++     G   +W        + +  +  +++   +  +++   L 
Sbjct: 479 LHRVIFGSIERFIGILIEHFAGVFPLWLA-----PVQVKVLPVNNEYHLEYAKEVTKLLQ 533

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G  V  D   E++G +     +   P  +++G+    +  V  +      +  +  +E
Sbjct: 534 EAGLKVEMDAREEKLGYRIREGQMEKVPYLLVLGNNERDEKTVTYRQHGQQKQITVPFDE 593

Query: 434 VINYASHRFSNN 445
            ++       N 
Sbjct: 594 FVSMLKKEIENK 605


>gi|227488647|ref|ZP_03918963.1| prolyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227543250|ref|ZP_03973299.1| prolyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091541|gb|EEI26853.1| prolyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227181059|gb|EEI62031.1| prolyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 588

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 95/221 (42%), Positives = 135/221 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+Y+WLPLG + L  +  I+REE 
Sbjct: 4   RLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRVAPGVYTWLPLGLRVLRKIENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L   + +  + R+  YG  + RL DR    M+ GPTHEE+ T + +  
Sbjct: 64  NAIGGQELRFPALLPREPYELTQRWTEYGNSLFRLKDRKGNDMLLGPTHEEMFTQVVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSF++  EG   SY     +Y
Sbjct: 124 YSSYKDFPVLLYQIQTKYRDEERPRAGILRGREFVMKDSYSFNMDDEGLDESYQNHRQAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
             IF+RLGL  +  +A SG +GG  S EF+ +++ GE    
Sbjct: 184 QNIFNRLGLDYVICKATSGAMGGSASEEFLAVSENGEDTFV 224



 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +    +  D  P         RGIE+GHIF  G KY+  M       +GK     MGSY
Sbjct: 400 IEAAEVREGDPAPNGTGTLTLQRGIEIGHIFQLGRKYTTAMDVQILDENGKRSVPTMGSY 459

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R +A ++E S+D KG++WP  VAP+ + ++     D+  +DA EK+ A L   G 
Sbjct: 460 GIGVSRAMAVIVEQSYDDKGLVWPACVAPYHVHVVVAN-KDKEAQDAAEKLVADLDAAGI 518

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +V +DD      G +F  A+LLG P  V++G +   D ++E + R  G    + ++  + 
Sbjct: 519 EVLFDDRPKVSPGVKFKDAELLGIPYTVVLG-RAFKDGEIEFRVRA-GETSTIPVDGALE 576

Query: 437 YASHRFSN 444
           +       
Sbjct: 577 HIVTTVRE 584


>gi|172039373|ref|YP_001805874.1| prolyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171700827|gb|ACB53808.1| prolyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 623

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 113/240 (47%), Positives = 152/240 (63%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 21  MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 80

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P LQ ++LW ESGR+++Y K    M  L DR D+ +  GPTHEEV+T +
Sbjct: 81  MNAAGAQECLLPQLQPSELWKESGRWETYTKAEGIMFSLIDRQDRELGLGPTHEEVITTV 140

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF+      + SY+ M
Sbjct: 141 AKDMIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFNEDEASLQRSYDAM 200

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  I  R GL    + A+SG IGG  S EF++LA+ GE +V  ++D   +    E  
Sbjct: 201 DQAYRNIISRCGLAYRAVEADSGAIGGSASQEFMILAEAGEDEVLYTEDG-KYAANVEKA 259



 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 61/171 (35%), Positives = 101/171 (59%), Gaps = 1/171 (0%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             SARGIEVGHIF  GTKYS  M ATF   +G++  + MG YG+G  R+  A +E S+D 
Sbjct: 451 LASARGIEVGHIFQLGTKYSEAMGATFTDENGEEKPIVMGCYGVGVSRLAQAAVEQSYDK 510

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GIIWP ++AP+++ +I    +DQ   +  + +Y +L+K+G +   DD  E+ G +F  A
Sbjct: 511 DGIIWPVAIAPYQVIIIVPNINDQNQIEVAQNLYDKLNKMGVETLLDDRDERAGVKFKDA 570

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G P +V+ G + +   KVE+  R +   +++ ++ ++    +     +
Sbjct: 571 DLIGIPYRVVTG-RSLKSGKVEVVTRKSKESQEIEVKNLVETLHNWVEQGK 620


>gi|282858709|ref|ZP_06267863.1| threonine--tRNA ligase [Prevotella bivia JCVIHMP010]
 gi|282588513|gb|EFB93664.1| threonine--tRNA ligase [Prevotella bivia JCVIHMP010]
          Length = 649

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 158/445 (35%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L      +  KG+  WLP G +    +  ++R+     
Sbjct: 232 EYLVMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQDLLRKLLKPY 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + S +L+V SG Y  YGK+  +       D+  +  P +     +I+    
Sbjct: 291 NYQEVITPGIGSKNLYVTSGHYAHYGKDAFQPIQTPEEDEEYMLKPMNCPHHCEIYAHKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    +R E      G+ R R F   DA+ F   P+  K  +       
Sbjct: 351 RSYKDLPLRIAEFGTVYRYEKSGELHGLTRVRNFTQDDAHIFVR-PDQVKAEFENNIDII 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L++F   G ++   +                  D  + + +  +D +         +   
Sbjct: 410 LKVFKTFGFENYEAQISLR--------------DPEDKEKYIGEDDVWNESEQAIKEACA 455

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++      F          
Sbjct: 456 EKGLKATVELGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLPQRF--------HL 504

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D        +     G+M    AV+     G   +W           + I    +
Sbjct: 505 EYTAEDNTKKTPVMVHRAPFGSMERFTAVLIEHTAGHFPLW------LTPDQVAILPISE 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G     DD  E+IG +    +L   P  V+VG K  ++  V ++
Sbjct: 559 KYNDYAREVMQKLDTAGVRALIDDRNEKIGRKIRDNELKRIPYMVVVGEKEAAEGLVAMR 618

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M++++ I+  +   + 
Sbjct: 619 KQGGGEQSTMTIQQFIDRVNAEVAE 643


>gi|329667761|gb|AEB93709.1| threonyl-tRNA synthetase [Lactobacillus johnsonii DPC 6026]
          Length = 643

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 154/434 (35%), Gaps = 36/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      V   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIVDKEVADGYEHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y  +M    D  D  M    P +      I++ HI+SYR LP    
Sbjct: 296 MNVDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++    +  
Sbjct: 356 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQIREE-FAKVLKLIMDVYKDFDITD 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + + + +  +          DD+       E  
Sbjct: 415 YYFRLS-------------YRDPKNTDKYYANDEMWETSQSMLKAAMDDLGLDYVEAEGE 461

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G DG++H  
Sbjct: 462 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLTYVGQDGEEHRP 510

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G M    A +   + G    W        +    I  +++   +  +K+ A 
Sbjct: 511 VMIHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PVQAEIIPVNEEAHGEYADKVRAE 565

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+K G     D   E++G +   +     P  +++G + ++ + V ++   T  +   SL
Sbjct: 566 LAKRGFRAEVDHRNEKLGYKIRESQTQKVPYTLVLGDEEMNANGVNVRRYGTEEQISKSL 625

Query: 432 EEVINYASHRFSNN 445
           ++ I        + 
Sbjct: 626 DDFIAEIDADVKSY 639


>gi|227877040|ref|ZP_03995129.1| theronyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256843644|ref|ZP_05549132.1| threonyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256850110|ref|ZP_05555540.1| threonyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|293381761|ref|ZP_06627738.1| threonyl-tRNA synthetase [Lactobacillus crispatus 214-1]
 gi|227863358|gb|EEJ70788.1| theronyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256615064|gb|EEU20265.1| threonyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256713082|gb|EEU28073.1| threonyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|290921681|gb|EFD98706.1| threonyl-tRNA synthetase [Lactobacillus crispatus 214-1]
          Length = 644

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 148/434 (34%), Gaps = 36/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L      +  +   G+  W+P G      V   I + +   G   +  P L
Sbjct: 239 RDHRTIGRDLDFF--FVDPKVGAGLPYWMPKGATIRRVVERYIIDREVADGYQHVYTPVL 296

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y  +M    D  D  M    P +      I++ HI+SYR+LP    
Sbjct: 297 MNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSYRDLPLRVA 356

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++    +  
Sbjct: 357 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQVQTE-FAKILKLIMDVYKDFDITD 415

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + F + +  +          DD+       E  
Sbjct: 416 YYFRLS-------------YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLDYVEAEGE 462

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G DG++H  
Sbjct: 463 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLTYVGQDGEEHRP 511

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G M    A +   + G    W        + +  I  +     +  EK+   
Sbjct: 512 VMIHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PVQVKIIPVNLDAHGEYAEKVRQE 566

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+K G     D   E++G +   +     P  +++G + + +  V ++   T      SL
Sbjct: 567 LAKRGFRAEVDTRNEKMGYKIRESQTQKVPYTLVLGDEEMKNGSVNVRRYGTDEEISKSL 626

Query: 432 EEVINYASHRFSNN 445
            + IN       + 
Sbjct: 627 TDFINEIDADVKSY 640


>gi|256545863|ref|ZP_05473219.1| threonine--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
 gi|256398559|gb|EEU12180.1| threonine--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
          Length = 641

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 138/442 (31%), Gaps = 42/442 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++ + +E  R D      ++ L +   H  + G   +   G      +     +     G
Sbjct: 233 YIELQEEAKRRDHRKIGKEMNLFS--FHDEAPGFPFFKENGMILRHELLNWWTDVLAENG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + + +LW  SG +D Y + M      + +     P +      ++     SY
Sbjct: 291 YGEIQTPLIMNEELWHRSGHWDHYKENM-YFTKIDGENYAVKPMNCPGSVLVYGEEPHSY 349

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R EL     G+ R R F   DA+ + L  +     +         +
Sbjct: 350 RDLPIRLAEYGQVHRHELSGALHGLFRVRTFTQDDAHVYCLPSQVKDEVFKM-IDLADLL 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K       + P       E                   DF   +      +   
Sbjct: 409 YSTFGFKYKI-ELSTRPDDFMGKIE-----------------EWDFAEKALEDALIERGI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +I  +  A Y    D H E            + R  + G I     +       T+  
Sbjct: 451 EYTINPKDGAFYGPKIDFHLEDA----------AKRTWQCGTI-QLDFQLPQNFDLTYID 499

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +G+      +    +G++      +     G+  +W           + I        D
Sbjct: 500 ENGEKKRPVMLHRALLGSIERFIGSVTEQFAGRFPLW------INPKQVEIIPVSDKFAD 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +  ++ K G  V  D   E +G +   A L+     ++VG       K+ +++R  
Sbjct: 554 FADDLAKKIKKAGYRVEVDHRSEGVGYKIRQAQLMRTNYMLVVGENEEKSGKLTVRNRDG 613

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              +D+S EE I        N 
Sbjct: 614 EETKDVSFEEFIEKLDEERDNK 635


>gi|227890630|ref|ZP_04008435.1| prolyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|227867568|gb|EEJ74989.1| prolyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|300214372|gb|ADJ78788.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
           [Lactobacillus salivarius CECT 5713]
          Length = 571

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 111/282 (39%), Positives = 163/282 (57%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DAE+ SH+LMLR G I Q + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MKQSQMLIPTLKEIPSDAEVVSHQLMLRGGYIKQITAGMYAYLPLAYRVMKKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A+EM VP +  A+LW ESGRY++YG  + +L DR+++  I GPTHEE  T I R 
Sbjct: 61  MDRIDAVEMLVPAVVPAELWQESGRYETYGPTLFKLKDRHERDFILGPTHEETFTTIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ+K+RDE RPRFG++R REFLM D YSF +     +  +N    +
Sbjct: 121 AIKSYKKLPLYLYQIQMKYRDENRPRFGLLRGREFLMLDGYSFHVDDASMEKVFNDTDKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL    + A+SG +GG+ S EF  +A+ GE  +  S    D+    E     
Sbjct: 181 YQRIFERCGLDFRGIIADSGAMGGNRSKEFQAIAEVGEDTIAYSDS-SDYAANIEMAKNL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            I   +    +     A  +     ++ + L  + +   + +
Sbjct: 240 RIPKQSHETPKDLEKVATPNAKTIVEVAEFLGTDTQNEIKTL 281



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 1/173 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E      RGIE+GHIF  GT+YS  + A     +G+   ++MG YGIG  R+++A++E 
Sbjct: 396 GEGVLKFTRGIEIGHIFQLGTRYSESLGADVLDENGRQVPMRMGCYGIGVSRLLSAIVEQ 455

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            +D  GI WP  +APF I ++ +   +   R+  EK+ A L   G  V  DD  E+ G +
Sbjct: 456 HNDENGIAWPREIAPFDIHVVPVNVKNDTQRELSEKVTAMLEDAGYQVLVDDRKERAGVK 515

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           FA +DL+G P+++ VG K   +  VEIK R  G + ++ LEE++N     F+ 
Sbjct: 516 FADSDLIGLPIRITVGKK-ADEGIVEIKLRQNGEKIEVKLEELLNSVKILFNE 567


>gi|333028319|ref|ZP_08456383.1| putative threonyl-tRNA synthetase [Streptomyces sp. Tu6071]
 gi|332748171|gb|EGJ78612.1| putative threonyl-tRNA synthetase [Streptomyces sp. Tu6071]
          Length = 580

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 134/439 (30%), Gaps = 36/439 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     ++L L +    +   G+  + P G      +    R      G   +  
Sbjct: 176 EAEKRDHRKLGNELDLFS-FPEEVGPGLAVFHPKGGIIRRAMEDYSRRRHEEEGYEFVYS 234

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+ +SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 235 PHTTKGALFEKSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 294

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ RSR F   DA+ +    + ++   +K     L +    G
Sbjct: 295 RLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIYCTKEQMAEEL-DKTLTFVLNLLRDYG 353

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +                  E +   S +  +    +     +         
Sbjct: 354 LDDFYLELST----------------KDEKKFVGSDEVWEEATATLQQVAEKQGLPLVPD 397

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++    F    ++ L  +A       + 
Sbjct: 398 PGGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLPERFDLSYTAA---DGSRQ 447

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +     G++    AV+    +      P  +AP +   I +           ++  
Sbjct: 448 RPVMIHRALFGSIERFFAVLL---EHYAGAMPPWLAPVQAVGIPVG---DAHVPYLKEFA 501

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A   + G  V  D   +++  +         P  VIVG   ++   V  +HR       +
Sbjct: 502 AEARRKGLRVDVDASSDRMQKKIRNHQKQKTPFMVIVGDDDMNAGTVSFRHRDGSQENGI 561

Query: 430 SLEEVINYASHRFSNNRPV 448
             +E I            V
Sbjct: 562 PKDEAIAKLLDVVERRVQV 580


>gi|257898235|ref|ZP_05677888.1| prolyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|293570616|ref|ZP_06681667.1| prolyl-tRNA synthetase [Enterococcus faecium E980]
 gi|257836147|gb|EEV61221.1| prolyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|291609287|gb|EFF38558.1| prolyl-tRNA synthetase [Enterococcus faecium E980]
          Length = 569

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 114/273 (41%), Positives = 160/273 (58%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--D 238
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  + C     D+    E     
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTI-CYSTESDYAANLEMATSY 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +    S  + +E           +     F S+
Sbjct: 240 YVSKKSHETQLELEKVATPNVKSIDEVADFFSV 272



 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 118/231 (51%), Gaps = 6/231 (2%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVHNEKLFDSLPEN 274
           + + +V+  +   D       T  ++       V         +  D+   +  D  P+N
Sbjct: 339 SDDVKVYADRYVQDLANAI--TGANETGFHYKNVNPERDFTVLSYEDLRFVQEGDPSPDN 396

Query: 275 KRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             V    RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+++A++E  
Sbjct: 397 NGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRLLSAIVEQH 456

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D +GI WP  +APF + ++ +   D+   +   ++   ++K G +V  DD  E+ G +F
Sbjct: 457 SDEQGINWPKGIAPFDLHIVQMNLKDEYQTNLTNELEEAMTKAGYEVLVDDRNERAGVKF 516

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           A +DL+G P+++ VG K V D  VE+K + TG   ++  EE+ N      +
Sbjct: 517 ADSDLIGCPIRITVGKKAV-DGIVEVKIKKTGEMVEVRKEELANTLPILLN 566


>gi|225849769|ref|YP_002730003.1| prolyl-tRNA synthetase [Persephonella marina EX-H1]
 gi|254782911|sp|C0QTI8|SYP_PERMH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225645347|gb|ACO03533.1| prolyl-tRNA synthetase [Persephonella marina EX-H1]
          Length = 563

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 110/251 (43%), Positives = 157/251 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+P L+E P +AE+ SH  ++R G I Q + G+Y +LPLG + L  +  IIR+ 
Sbjct: 1   MRASQYFIPTLKEAPAEAEVPSHIYLIRAGFIRQLAAGLYEYLPLGFRVLKKIEGIIRKY 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P L  A+LW E+GR+D YGKE+ R+ DR  +    GPTHEE +TD+ R 
Sbjct: 61  MDDAGALEVLLPILAPAELWQETGRWDVYGKELFRVEDRKGRFFALGPTHEETITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SY++LP  FYQIQ KFRDE RPR+G++R REF+MKDAYSFD++ E +  SY  M  +
Sbjct: 121 NIRSYKDLPKNFYQIQTKFRDEARPRYGLIRGREFIMKDAYSFDISEEMAVKSYEIMKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF  LGL  + + A+ G IGG  SHEF+V    GE  +    +              
Sbjct: 181 YKKIFDELGLDYLMVEADVGAIGGKYSHEFVVKVPNGEAHIVFCDNCGYAANVEAAKYEF 240

Query: 241 DIISLNSIVEQ 251
           ++  L    E+
Sbjct: 241 ELDKLPPEDEK 251



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 122/247 (49%), Gaps = 4/247 (1%)

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
              A S  +      E  V     +  V+      D        + +D   +N  + +  
Sbjct: 316 CHLASSEELKDLGIVEGFVGPMGLDIPVYADISVKDLHNFVVGANEEDYHYINVNIPRDF 375

Query: 254 APYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
            P     D    +  D  P  K       G+EVGHIF  GTKYS  + A F   DG++  
Sbjct: 376 KPV-DFVDFSTAREGDPCPVCKKPLNETTGLEVGHIFLLGTKYSEALKAYFVDKDGREKP 434

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + MG YGIG  R++AA +E SHD  GIIWP+++APFK+ ++ +   D   +   E IY +
Sbjct: 435 IVMGCYGIGVSRLMAAAVEQSHDENGIIWPENIAPFKLHILALNIKDDQIKTVAEDIYTK 494

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             + G +V +DD     G++F  ADL+G P +++VG + V + KVEI+ R  G +E++ +
Sbjct: 495 AKEKGIEVLFDDRDISPGAKFKDADLIGIPYRIVVG-RGVKNGKVEIQTRKDGKKEEIDI 553

Query: 432 EEVINYA 438
            E+ N+ 
Sbjct: 554 NEIDNFL 560


>gi|268319910|ref|YP_003293566.1| threonyl-tRNA synthetase 1 [Lactobacillus johnsonii FI9785]
 gi|262398285|emb|CAX67299.1| threonyl-tRNA synthetase 1 [Lactobacillus johnsonii FI9785]
          Length = 643

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 154/434 (35%), Gaps = 36/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      V   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIVDKEVADGYEHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y  +M    D  D  M    P +      I++ HI+SYR LP    
Sbjct: 296 MNVDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++    +  
Sbjct: 356 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQIREE-FAKVLKLIMDVYKDFDITD 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + + + +  +          DD+       E  
Sbjct: 415 YYFRLS-------------YRDPKNTDKYYANDEMWEKSQSMLKAAMDDLGLDYVEAEGE 461

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G DG++H  
Sbjct: 462 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLTYVGQDGEEHRP 510

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G M    A +   + G    W        +    I  +++   +  +K+ A 
Sbjct: 511 VMIHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PVQAEIIPVNEEAHGEYADKVRAE 565

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+K G     D   E++G +   +     P  +++G + ++ + V ++   T  +   SL
Sbjct: 566 LAKRGFRAEVDHRNEKLGYKIRESQTQKVPYTLVLGDEEMNANGVNVRRYGTEEQISKSL 625

Query: 432 EEVINYASHRFSNN 445
           ++ I        + 
Sbjct: 626 DDFIAEIDADVKSY 639


>gi|73662814|ref|YP_301595.1| prolyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|114152258|sp|Q49X48|SYP_STAS1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|72495329|dbj|BAE18650.1| prolyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 566

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 115/237 (48%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P  AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N+ AI+REE
Sbjct: 1   MKQSKVFIPTMKEVPAGAEALSHRLLLKAGLIKQSTSGIYSYLPLAARVLNNIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T I R 
Sbjct: 61  MERIDAVEILMPALQQAELWEESGRWSAYGPELMRLQDRNGREFALGPTHEEVVTSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REF+MKDAYSF    +    SY  M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKYRDEKRPRFGLLRGREFIMKDAYSFHADEDSLDASYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S+   D+    E  
Sbjct: 181 YGRIFKRVGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVYSEQ-SDYAANIEKA 236



 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 71/164 (43%), Positives = 103/164 (62%), Gaps = 2/164 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GIIW
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLLMGCYGIGVSRTLSAIVEQNNDENGIIW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI I       R+  +++Y +L +   DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLITINPKKDDQRELADQLYTQLKE-NYDVLYDDRKERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           P++V+VG K  ++  VE+K R TG  ED+ ++ +INY +  +SN
Sbjct: 523 PVRVVVG-KNAAEGIVEVKRRDTGESEDVHVDNLINYVNTLYSN 565


>gi|302533417|ref|ZP_07285759.1| threonyl-tRNA synthetase [Streptomyces sp. C]
 gi|302442312|gb|EFL14128.1| threonyl-tRNA synthetase [Streptomyces sp. C]
          Length = 658

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 66/440 (15%), Positives = 140/440 (31%), Gaps = 38/440 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     ++L L + +  +   G+  + P G      +    R      G   +  
Sbjct: 254 EAEKRDHRKLGNELDLFS-IPDEIGSGLAVFHPRGGIIRRVMEDYSRRRHEEEGYEFVYS 312

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+ +SG  D Y + M               P +  +   IF +  +SYR LP 
Sbjct: 313 PHATKGALFEKSGHLDWYAEGMYPPMQLDGGTDYYLKPMNCPMHNLIFDARGRSYRELPL 372

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R+R F   DA+ +    + ++   ++     L +    G
Sbjct: 373 RLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTREQMAEEL-DRTLTFVLNLLRDYG 431

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +                    +   S +  +          +      +  
Sbjct: 432 LTDFYLELST----------------KDPEKFVGSDEVWEEATAVLQQVAEKQGLPLTPD 475

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++    F    ++       + G DG  
Sbjct: 476 PGGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLPERFD----LEYTGPDGSR 524

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +     G++    AV+    +      P  +AP +   I I        +  ++ 
Sbjct: 525 QRPVMIHRALFGSIERFFAVLL---EHYAGAMPPWLAPVQAVGIPIGDGH---VEYLQEF 578

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A   K G  V  D   +++  +      L  P  +IVG + ++   V  ++R       
Sbjct: 579 AAAAKKQGLRVEVDASSDRMQKKIRNHQKLKVPFMIIVGDEDMAAGTVSFRYRDGSQENG 638

Query: 429 MSLEEVINYASHRFSNNRPV 448
           +  +E +   +   ++   V
Sbjct: 639 IPKDEALAKLAKVVADRVQV 658


>gi|298373605|ref|ZP_06983594.1| threonine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274657|gb|EFI16209.1| threonine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 650

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 83/437 (18%), Positives = 158/437 (36%), Gaps = 38/437 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L T       KG+  WLP G      +   +++ Q R G  ++  P
Sbjct: 242 AKKRDHRKIGKELELFT-FSDMVGKGLPLWLPKGTDLRLRLENFLKKLQKRYGYQQVITP 300

Query: 73  TLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            + +  L+V SG +  YGK+  +        +  +  P +     +I++S  KSY++LPF
Sbjct: 301 HIGAKQLYVTSGHWAKYGKDSFQPIQTPEEGEEYLLKPMNCPHHCEIYKSTPKSYKDLPF 360

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +    +R E      G+ R R F   DA+ F   P+  K  + K+    L IF  L 
Sbjct: 361 RVAEFGTVYRYEQSGELHGLTRVRSFTQDDAHLFCR-PDQIKEEFIKVMEIILIIFKALR 419

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +   +                  D  + + +   D       +   +      L ++V
Sbjct: 420 FDNFEAQISLR--------------DKVDREKYIGSDENWEKAENAIIEACRETGLKAVV 465

Query: 250 E-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           E    A Y    D     + D+L    ++    ++                  + GAD +
Sbjct: 466 EYGEAAFYGPKLDFM---VKDALGRRWQLGTIQVDYNLP--------ERFELEYTGADNQ 514

Query: 309 DHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            H    +     G+M    AV+     GK  +W        + +       +   +  ++
Sbjct: 515 KHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLWLTPEQAVVLPI------SEKFNEYAQQ 568

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + +RL+ +      D   E+IG +    +L   P  +IVG+  +  + V ++ +  G + 
Sbjct: 569 VASRLNILDVRAIGDFRDEKIGRKIRDNELKHIPYLLIVGNDEMETNTVAVRRQGEGDKG 628

Query: 428 DMSLEEVINYASHRFSN 444
            M ++E     +   + 
Sbjct: 629 KMKVDEFAKMINDEVNE 645


>gi|239939977|ref|ZP_04691914.1| threonyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|239986461|ref|ZP_04707125.1| threonyl-tRNA synthetase [Streptomyces roseosporus NRRL 11379]
          Length = 653

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 67/442 (15%), Positives = 141/442 (31%), Gaps = 38/442 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD     ++L L +    +   G+  + P G      +    R      G   +
Sbjct: 247 LEEAAKRDHRKLGNELDLFS-FPDEIGPGLAVFHPKGGVIRRAMEDYSRRRHEEEGYEFV 305

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNL 128
             P      L+ +SG  D Y   M      +D       P +  +   IF +  +SYR L
Sbjct: 306 YSPHATKGKLFEKSGHLDWYADGMYPPMQLDDGVDYYLKPMNCPMHNLIFDARGRSYREL 365

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P   ++    +R E      G+ RSR F   DA+ +    + ++   ++     L +   
Sbjct: 366 PLRLFEFGTVYRYEKSGVVHGLTRSRGFTQDDAHIYCTKEQMAEEL-DRTLTFVLNLLRD 424

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            GL    +   +                    +   S +  +    +     +       
Sbjct: 425 YGLTDFYLELST----------------KDPEKYVGSDETWEEATATLQQVAEKQGLPLV 468

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                 A Y       + +  D++    ++S   ++    F    ++       + G DG
Sbjct: 469 PDPGGAAFYGPKI---SVQCKDAIGRTWQMSTVQLD----FNLPERFD----LEYTGPDG 517

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                  +     G++    AV+    +     +P  +AP +   I I           +
Sbjct: 518 SKQRPVMIHRALFGSIERFFAVLL---EHYAGAFPVWLAPVQAVGIPIG---DAHIPYLQ 571

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +  A+  K G  V  D   +++  +         P  +I G + +++  V  ++R     
Sbjct: 572 EFAAKARKQGLRVDVDASSDRMQKKIRNQQKNKVPFMIIAGDEDMANGAVSFRYRDGSQE 631

Query: 427 EDMSLEEVINYASHRFSNNRPV 448
             + ++E I   +    +   V
Sbjct: 632 NGIPVDEAIAKIAKAVEDRVQV 653


>gi|291519633|emb|CBK74854.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Butyrivibrio
           fibrisolvens 16/4]
          Length = 588

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 148/443 (33%), Gaps = 36/443 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           L +L+E   RD       + L   M      +G+  +LP G      +   IR ++ + G
Sbjct: 174 LALLEEAKERDHRKIGKDMQLF--MADDLIGRGLPMYLPNGYTIWTELENYIRNKERKLG 231

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            + +  P + +  L+  SG +D Y + M    +   ++ +  P +      IF +   SY
Sbjct: 232 YLHVMTPCVGTVQLYQTSGHWDHYKENMFPAMEVEGESFVLRPMNCPHHMRIFANRPHSY 291

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP    +I   FR E      G+ R R F   D++ F    +        +       
Sbjct: 292 KELPIRIAEIAHDFRFESSGTLKGIERGRHFCQNDSHIFCTQEQIKSE-VKSVCDLIFST 350

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDII 243
           +   G+                        D  +T+ +   D   +    +      +I 
Sbjct: 351 YEDFGITDYRCVLSLR--------------DPADTKKYHQDDEMWNTAEQALRETLTEIG 396

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +      A Y    DV    +  ++     +S   ++    F    K+      T+ 
Sbjct: 397 IEFTEEIGEAAFYGPKLDV---NVKPAIGNEITLSTCQLD----FCLPAKFD----LTYT 445

Query: 304 G-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                K   V +    +G++    A I    +      P  +AP ++ ++ +K  D    
Sbjct: 446 DADSNKQTPVVIHRAILGSLDRFMAYIL---EETKGNLPLWLAPTQVKVLPVKNDDADLN 502

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +K+   L+     V +D   E++G +   A +   P   ++G    ++  V  +   
Sbjct: 503 AYAQKLVDALADADVRVEFDTRSEKLGYKMREAQIQKVPYLAVLGKNEEAEGTVSYRLHG 562

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 +  +E +    +   + 
Sbjct: 563 EHGTTTVKFDEFVELIVNEIKSK 585


>gi|332287873|ref|YP_004422774.1| threonyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|313848445|emb|CBY17449.1| threonyl-tRNA synthetase [Chlamydophila psittaci RD1]
 gi|325506736|gb|ADZ18374.1| threonyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|328915135|gb|AEB55968.1| threonyl-tRNA synthetase [Chlamydophila psittaci 6BC]
          Length = 635

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 143/441 (32%), Gaps = 43/441 (9%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD  +   KL L +    + S G+  + P G    D +    +      G 
Sbjct: 227 LHQLEEAKQRDHRVLGTKLDLFSQ--QECSAGMPFFHPRGMIIWDALIGYWKRLHQLAGY 284

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P L +  LW  SG + +Y + M  L   +D+     P +       +++ + SY+
Sbjct: 285 KEIQTPQLMNRSLWEVSGHWSNYRENMYTLK-IDDEDYAIKPMNCPGCMLYYKTRLHSYK 343

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
             P    +I    R E+     G+MR R F   DA+   LTPE  +     +      ++
Sbjct: 344 QFPLRIAEIGHVHRYEVSGALSGLMRVRAFHQDDAH-VFLTPEQVEEETLNILHLVSELY 402

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL+   +   + P                E     S +  +    +      +  + 
Sbjct: 403 STFGLEY-HLELSTRP----------------EKATIGSDELWELATAALERALINSNTP 445

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I     A Y    D+H           K    R  + G I              +  A
Sbjct: 446 FIINPGDGAFYGPKIDIHV----------KDAIQRTWQCGTI-QLDMFLPERFELEYTNA 494

Query: 306 DGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            G+     M    +     R +  +IE       +                       + 
Sbjct: 495 QGEKSTPVMLHRALFGSIERFLGILIEHFKGRFPLWLSPEHIRLITVA-------DRHQP 547

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+     K+G  V  DD  E +  +   A  +     V +G + +  + + I+ R  
Sbjct: 548 RAQKLATAWQKLGLIVTVDDSNESVSKKIRNAQNMQVNYMVTLGDREIEQNTLAIRTRDN 607

Query: 424 GIREDMSLEEVINYASHRFSN 444
            +  DM+ ++ IN      ++
Sbjct: 608 RVLNDMTEDKFINTILEEKNS 628


>gi|227889526|ref|ZP_04007331.1| threonyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
 gi|227850004|gb|EEJ60090.1| threonyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
          Length = 643

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 153/434 (35%), Gaps = 36/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      V   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIVDKEVADGYEHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y  +M    D  D  M    P +      I++ HI+SYR LP    
Sbjct: 296 MNVDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++    +  
Sbjct: 356 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQIREE-FAKVLKLIMDVYKDFDITD 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + + + +  +          DD+       E  
Sbjct: 415 YYFRLS-------------YRDPKNTDKYYANDEMWERSQSMLKAAMDDLGLDYVEAEGE 461

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G DG++H  
Sbjct: 462 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLTYVGQDGEEHRP 510

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G M    A +   + G    W        +    I  +++      +K+   
Sbjct: 511 VMIHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PVQAEIIPVNEEAHGAYADKVREE 565

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+K G     D   E++G +   +     P  +++G + ++ + V ++   T  +   SL
Sbjct: 566 LAKRGFRAEVDHRNEKLGYKIRESQTQKVPYTLVLGDEEMNANGVNVRRYGTEEQISKSL 625

Query: 432 EEVINYASHRFSNN 445
           +E IN       + 
Sbjct: 626 DEFINEIDADVKSY 639


>gi|90961542|ref|YP_535458.1| prolyl-tRNA synthetase [Lactobacillus salivarius UCC118]
 gi|114152204|sp|Q1WUG0|SYP_LACS1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|90820736|gb|ABD99375.1| Prolyl-tRNA synthetase [Lactobacillus salivarius UCC118]
          Length = 571

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 111/282 (39%), Positives = 163/282 (57%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DAE+ SH+LMLR G I Q + G+Y++LPL  + +  +  IIREE
Sbjct: 1   MKQSQMLIPTLKEIPSDAEVVSHQLMLRGGYIKQITAGMYAYLPLAYRVMKKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A+EM VP +  A+LW ESGRY++YG  + +L DR+++  I GPTHEE  T I R 
Sbjct: 61  MDRIDAVEMLVPAVVPAELWQESGRYETYGPTLFKLKDRHERDFILGPTHEETFTTIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ+K+RDE RPRFG++R REFLM D YSF +     +  +N    +
Sbjct: 121 AIKSYKKLPLYLYQIQMKYRDENRPRFGLLRGREFLMLDGYSFHVDDASMEKVFNDTDKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL    + A+SG +GG+ S EF  +A+ GE  +  S    D+    E     
Sbjct: 181 YQRIFERCGLDFRGIIADSGAMGGNRSKEFQAIAEVGEDTIAYSDS-SDYAANIEMAKNL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            I   +    +     A  +     ++ + L  + +   + +
Sbjct: 240 RIPKQSHETPKDLEKVATPNAKTIVEVAEFLGTDTQNEIKTL 281



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 1/173 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E      RGIE+GHIF  GT+YS  + A     +G+   ++MG YGIG  R+++A++E 
Sbjct: 396 GEGVLKFTRGIEIGHIFQLGTRYSESLGADVLDENGRQVPMRMGCYGIGVSRLLSAIVEQ 455

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            +D  GI WP  +APF I ++ +   +   R+  EK+ A L   G  V  DD  E+ G +
Sbjct: 456 HNDENGIAWPREIAPFDIHVVPVNVKNDTQRELSEKVTAMLEDAGYQVLVDDRKERAGVK 515

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           FA +DL+G P+++ VG K   +  VEIK R  G + ++ LEE++N     F+ 
Sbjct: 516 FADSDLIGLPIRITVGKK-ADEGIVEIKLRQNGEKIEVKLEELLNSVKILFNE 567


>gi|56963999|ref|YP_175730.1| prolyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|81822102|sp|Q5WFT6|SYP_BACSK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56910242|dbj|BAD64769.1| proline-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 566

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 119/271 (43%), Positives = 172/271 (63%), Gaps = 5/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S Y  P +++ P DAE  SH+LMLR GM+ Q + G+Y++LPL ++ +  + AIIREE
Sbjct: 1   MRQSTYLAPTMRDVPADAEAISHQLMLRAGMMRQIAAGVYAYLPLAKRTIAKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+++P+L  A+LW  SGR+++ G E++RL DR+++    GPTHEEV+T + + 
Sbjct: 61  LDAIGAQELTLPSLHPAELWQASGRWEAMGDELVRLKDRHNRDFALGPTHEEVITSLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q KFRDE RPRFG++R REF+MKDAYSF  +PE    +Y +M  +
Sbjct: 121 GIASYKKLPLCVYQVQTKFRDERRPRFGLLRGREFIMKDAYSFHDSPESLDEAYWQMHGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE--NTD 238
           Y RIF R+GL+  P+ A+SG +GG  +HEF+ LA  GE  V  S    D+    E     
Sbjct: 181 YSRIFTRVGLEFRPVIADSGAMGGKDTHEFMALASVGEDTVVYSD-GSDYAANLEMAKAA 239

Query: 239 FDDIISLNSI--VEQWTAPYAATSDVHNEKL 267
             +  S+ +   +E+   P A T D   E L
Sbjct: 240 LPEAPSVQAHGLLEKRATPEAKTVDEAAEAL 270



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 65/191 (34%), Positives = 104/191 (54%), Gaps = 3/191 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
             A  D+   +  D  P+ K       GIE+G IF  GT+YS  + A +    GK     
Sbjct: 377 VTAYKDLRTVREGDPSPDGKGTLRFAEGIEIGQIFKLGTRYSESLDAKYLDGQGKAQPFL 436

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R +AAVIE  HD  GI+WP +VAPF + L+ +   ++  +   E++Y+ + 
Sbjct: 437 MGCYGIGVSRTLAAVIEQHHDEAGIVWPKAVAPFDVHLLALNVKNEDQKTLAEQLYSDIR 496

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G DV +DD  E+ G +F  ADL+G P++V VG +   +  +E+K R TG + +++  E
Sbjct: 497 QAGIDVLYDDRPERAGVKFKDADLIGLPVRVAVGKR-AGEGIIEVKVRKTGEQLELTASE 555

Query: 434 VINYASHRFSN 444
           ++ + +     
Sbjct: 556 LVRWLNDFLRE 566


>gi|223039114|ref|ZP_03609404.1| threonyl-tRNA synthetase [Campylobacter rectus RM3267]
 gi|222879475|gb|EEF14566.1| threonyl-tRNA synthetase [Campylobacter rectus RM3267]
          Length = 606

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 153/437 (35%), Gaps = 40/437 (9%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      ++ L      +   G+  WLP G +    +  I+ +     G   +
Sbjct: 205 IEEAKKRDHRKLGVEMKLFA-FDEEVGGGLPIWLPNGGRLRSKLEQILYKAHRDRGYEPV 263

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P L  AD+W +SG Y +Y + M      ++      P +      +++S I+SYR+LP
Sbjct: 264 RGPELLKADVWKKSGHYANYKENM-YFTTIDEAEYGIKPMNCVGHIKVYQSDIRSYRDLP 322

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F++  +  R E      G+ R REF   D++ F + P   K +  ++     +I    
Sbjct: 323 LKFFEYGVVHRHEKSGVLHGLFRVREFAQDDSHIFCM-PSQIKENILEILKFAGKIMENF 381

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G                          T   +     +  +    +     D+      I
Sbjct: 382 GFHYEMEI------------------STKPAKAIGGDEIWETATKALKEALDENGFKYGI 423

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    D+   K+ D+L    +     ++    F    ++       +  A+ +
Sbjct: 424 DEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPERFD----LGYIDANNE 472

Query: 309 DHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 +    +G+      ++     G+   +         + + I        D  + 
Sbjct: 473 RRQPVMLHRALLGSFERFIGILIEHTGGELPFF------VAPTQVVIVPISDAHLDYAKT 526

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L K+G D       E +  +   A+    P+  ++G   V++S + ++ R T  ++
Sbjct: 527 VAKELRKIGVDSEIASKNESLNKRIRTAEKQRVPMIAVLGDNEVANSAIALRDRTTREQK 586

Query: 428 DMSLEEVINYASHRFSN 444
           DM L+E +     + + 
Sbjct: 587 DMKLDEFVGLLKSKLAE 603


>gi|317131189|ref|YP_004090503.1| threonyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315469168|gb|ADU25772.1| threonyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 645

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 158/444 (35%), Gaps = 37/444 (8%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           + +L+E   RD      +L   T  +    +G+   LP G + L  +   + +E+ + G 
Sbjct: 233 ITMLEEARKRDHNKLGRELGFFTT-VDYIGQGLPVMLPKGSRVLQLLQRFVEDEEEKRGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           +    P L  +DL+  SG +D Y   M      +++D+     P        ++ +  +S
Sbjct: 292 LLTKTPLLAKSDLYKISGHWDHYRDGMFVLGDEEKDDEVFALRPMTCPFQFQVYLNKKRS 351

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP    +    FR+E      G++R R+F + + +     P+  +  +         
Sbjct: 352 YRDLPMRLGETSTLFRNEASGEMHGLIRVRQFTISEGHIACR-PDQLEEEFKGCVDLANF 410

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +   +GL              D+S+ F    +    +   + +  +          DD+ 
Sbjct: 411 MLKTVGLDE------------DVSYRFSKWDENDRDKYIGTSEQWEEVQDRMRNILDDLG 458

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +      A Y    D+    +F    +   +    I+    F      +      + 
Sbjct: 459 IQYTEASGEAAFYGPKLDIQIRNVF---GKEDTLITVQID----FQL----AKRFEMKYT 507

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG++ Y   +    IG      A++    +      P  +AP ++ ++ I    +   
Sbjct: 508 DTDGQEKYPYVIHRTSIGCYERTLALLI---EKYAGAMPTWLAPEQVRVLPISEKHE--- 561

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              + +  +L   G     D   E+IG +   A L   P  ++ G +   +  V ++ R+
Sbjct: 562 AYAQPVLEKLRAAGLRATVDQRNEKIGYRIREAQLEKVPYMLVAGDREAEEGTVSVRARV 621

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
            G     +++  +       +  R
Sbjct: 622 -GEGGTQTVDAFLKDILQEIAEKR 644


>gi|196008377|ref|XP_002114054.1| hypothetical protein TRIADDRAFT_58133 [Trichoplax adhaerens]
 gi|190583073|gb|EDV23144.1| hypothetical protein TRIADDRAFT_58133 [Trichoplax adhaerens]
          Length = 473

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 139/456 (30%), Positives = 239/456 (52%), Gaps = 34/456 (7%)

Query: 4   SKYFLPILQ--ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           S  F+P+++  +    A ++   ++   G++ Q   G+Y  LP+  +A+  +  ++ EE 
Sbjct: 33  SSLFIPMMRTSDQSASASVSRKTILENAGLLKQSRPGLYYILPVALRAMYKLIKVVDEEM 92

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R G  ++  P L  ADLW  SGR+D+ G EM +L DR+++    GPTHEE ++++  ++
Sbjct: 93  TRIGGSKLGTPCLIPADLWQSSGRWDTLGAEMFKLKDRHNRHYCLGPTHEESISELVGTY 152

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + S   +P   YQI  KFRDE+RPR G+ R+REF MKD YSFD+  E S +SY  +  +Y
Sbjct: 153 LNSKNMMPLRLYQIDRKFRDEIRPRLGLRRAREFWMKDMYSFDIDKEASLNSYEIICEAY 212

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +RIF+RLGL  + + A+SG +GGD SHEF ++AD GE ++          +  E     D
Sbjct: 213 VRIFNRLGLNVVKVVADSGAMGGDTSHEFHLIADDGEDEILICDQCHK-AMNMETLKSGD 271

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +++  ++ E                             RG+E+GH FY GTKYS   S T
Sbjct: 272 VMAECNLCEGKQ-------------------NKNIQKYRGVEIGHAFYLGTKYSKAASVT 312

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-- 359
           +   +    YV+MGSYGIG  R++ A +E       I WP  + P+ I ++ + +     
Sbjct: 313 YTDENNCKVYVEMGSYGIGVTRLLDAALEVQSTCNKIRWPSVITPYNICIVPLGSPKDNS 372

Query: 360 --VCRDACEKIYARLS--KVGCDVFWDDM-----GEQIGSQFAVADLLGFPLQVIVGSKF 410
                   +++Y +L+  K+  +V  DD          G++   A LLG+P  +I+G + 
Sbjct: 373 SQQLLQLAQQLYDKLAVGKLQNEVVIDDRIYLSKTVGPGTRLRQATLLGYPYLIILGKQA 432

Query: 411 V-SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +     +E++ +L G ++++ ++ ++++    +   
Sbjct: 433 LQKQGYIELEDQLNGSKQNIHIDNIVDHIQQVYEKR 468


>gi|163851744|ref|YP_001639787.1| threonyl-tRNA synthetase [Methylobacterium extorquens PA1]
 gi|163663349|gb|ABY30716.1| threonyl-tRNA synthetase [Methylobacterium extorquens PA1]
          Length = 675

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 142/443 (32%), Gaps = 40/443 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      ++ L      +   G+  W   G      + A +R    +  
Sbjct: 232 YLHRLEEAERRDHRRLGKEMDLF--HFQEEGPGVVFWHAKGWTIFQELIAYMRRRL-KGD 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG +  Y + M       +     +     P +      IF+ 
Sbjct: 289 YAEVNAPQILDKSLWETSGHWGWYRENMFAAQSAGEEAEDKRWFALKPMNCPGHVQIFKH 348

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + +         
Sbjct: 349 GLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIFCTEDQLAAECLKIN-D 407

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L  +   G   I ++  + P     S      A+   TQV             E    
Sbjct: 408 LILSTYADFGFDQILVKLSTRPEKRVGSDALWDHAEAVMTQVL---------AQIEEQSG 458

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             I +  ++     A Y    +     L D++  + +     ++    F    ++     
Sbjct: 459 GRIKT--AVNPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVD----FNLPERFD---- 505

Query: 300 ATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A++      K   V +     G+M     ++     G   +W   V     ++       
Sbjct: 506 ASYIDADSQKKPPVMIHRAICGSMERFTGILIEHFAGHFPLWLAPVQVVVATIT------ 559

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   L + G  V  D   E+I  +     L   P+ + +G +   +  V +
Sbjct: 560 SDADPYAREVVRVLERAGLRVEADLRNEKINYKVREHSLAKVPVLLALGRREAEERTVSV 619

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +     M+L+  +      
Sbjct: 620 RRMGSQKTTTMALDAALAAFIEE 642


>gi|322371434|ref|ZP_08045983.1| threonyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320548966|gb|EFW90631.1| threonyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 645

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 140/445 (31%), Gaps = 45/445 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +     +   RD      ++ L +  +  HS G  ++ P G      +   +RE+    G
Sbjct: 235 FLERREEAAKRDHRKIGREMDLFS--VPDHSPGCVNFHPNGMAIRRELEEYVREKNAELG 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             E+  P L   +LW +SG YD + +E      ++N       P +      I+    +S
Sbjct: 293 YEEVKTPELNHTELWKKSGHYDHFKEEGEMFAWEQNGHEYGLKPMNCANHAHIYDDQRRS 352

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  F +  + +R+E      G++R R F   D ++F       +    +       
Sbjct: 353 YRDLPLRFSEFGMCYRNEQSGELSGMLRVRGFTQDDGHAFVRPEGIREE-IARTLSVIDG 411

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   GL +                   ++ +T         +  +    +     +D  
Sbjct: 412 MYEAFGLDA------------------HLVLETKPDDAIGDDELWERAHEALRNALEDEG 453

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y     ++ E   D++     +    ++              +  ++ 
Sbjct: 454 LEYDVAEGEGAFYGPKIAINVE---DAIGREWTIGTVQLDFVQP--------ERLDISYV 502

Query: 304 GADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G D ++H   M    +     R +   IE                     + I   +   
Sbjct: 503 GEDNEEHRPVMIHRALLGSMERFMGVFIEHVAGKFPFWLAPEQVRI----LPITDDESG- 557

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E+I   L      V  DD    +G +         P  +IVGS       + ++ R
Sbjct: 558 --YAEEIADELGS--FRVEVDDRDWTLGKKIRAGHDDRVPYMIIVGSDEAESGTISVRDR 613

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                  +  ++   +    +   R
Sbjct: 614 EERQEGGVERDDFRRHLEAEYGEKR 638


>gi|257887080|ref|ZP_05666733.1| prolyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257895645|ref|ZP_05675298.1| prolyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|293377744|ref|ZP_06623933.1| proline--tRNA ligase [Enterococcus faecium PC4.1]
 gi|257823134|gb|EEV50066.1| prolyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257832210|gb|EEV58631.1| prolyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|292643744|gb|EFF61865.1| proline--tRNA ligase [Enterococcus faecium PC4.1]
          Length = 569

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 114/273 (41%), Positives = 160/273 (58%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--D 238
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  + C     D+    E     
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTI-CYSTESDYAANLEMATSY 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +    S  + +E           +     F S+
Sbjct: 240 YVSKKSHETQLELEKVATPNVKSIDEVADFFSV 272



 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 65/186 (34%), Positives = 105/186 (56%), Gaps = 3/186 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +  D  P+N  V    RGIE+GHIF  GT+YS  M AT    +G++ +V MG Y
Sbjct: 382 EDLRFVQEGDPSPDNNGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D +GI WP  +APF + ++ +   D+   +   ++   ++K G 
Sbjct: 442 GIGVSRLLSAIVEQHSDEQGINWPKGIAPFDLHIVQMNLKDEYQTNLTNELEEAMTKAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA +DL+G P+++ VG K V    VE+K + TG   ++  EE+ N 
Sbjct: 502 EVLVDDRNERAGVKFADSDLIGCPIRITVGKKAVE-GIVEVKIKKTGEMVEVRKEELANT 560

Query: 438 ASHRFS 443
                +
Sbjct: 561 LPILLN 566


>gi|254561516|ref|YP_003068611.1| threonine tRNA synthetase [Methylobacterium extorquens DM4]
 gi|254268794|emb|CAX24755.1| threonine tRNA synthetase [Methylobacterium extorquens DM4]
          Length = 675

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 142/443 (32%), Gaps = 40/443 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      ++ L      +   G+  W   G      + A +R    +  
Sbjct: 232 YLHRLEEAERRDHRRLGKEMDLF--HFQEEGPGVVFWHAKGWTIFQELIAYMRRRL-KGD 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG +  Y + M       +     +     P +      IF+ 
Sbjct: 289 YAEVNAPQILDKSLWETSGHWGWYRENMFAAQSAGEEAEDKRWFALKPMNCPGHVQIFKH 348

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + +         
Sbjct: 349 GLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIFCTEDQLAAECLKIN-D 407

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L  +   G   I ++  + P     S      A+   TQV             E    
Sbjct: 408 LILSTYADFGFDQILVKLSTRPEKRVGSDALWDHAEAVMTQVL---------AQIEEQSG 458

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             I +  ++     A Y    +     L D++  + +     ++    F    ++     
Sbjct: 459 GRIKT--AVNPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVD----FNLPERFD---- 505

Query: 300 ATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A++      K   V +     G+M     ++     G   +W   V     ++       
Sbjct: 506 ASYIDADSQKKPPVMIHRAICGSMERFTGILIEHFAGHFPLWLAPVQVVVATIT------ 559

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   L + G  V  D   E+I  +     L   P+ + +G +   +  V +
Sbjct: 560 SDADPYAREVVRVLERAGLRVEADLRNEKINYKVREHSLAKVPVLLALGRREAEERTVSV 619

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +     M+L+  +      
Sbjct: 620 RRMGSQKTTTMALDAALAAFIEE 642


>gi|29840712|ref|NP_829818.1| threonyl-tRNA synthetase [Chlamydophila caviae GPIC]
 gi|33301681|sp|Q821I3|SYT_CHLCV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|29835062|gb|AAP05696.1| threonyl-tRNA synthetase [Chlamydophila caviae GPIC]
          Length = 635

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 143/445 (32%), Gaps = 42/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD  +   KL L +    + S G+  + P G    D +    +    
Sbjct: 223 LKEHLHQLEEAKKRDHRVLGAKLDLFSQ--QECSAGMPFFHPRGMIVWDALIGYWQRLHQ 280

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  ++  P L +  LW  SG + +Y   M  L   +++     P +       +++ +
Sbjct: 281 LAGYKQILTPQLMNRSLWETSGHWSNYKANMYTLK-IDEEDYAIKPMNCPGCMLYYKTRL 339

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY+  P    +I    R E+     G+MR R F   DA+   LTPE  +     +    
Sbjct: 340 HSYKEFPLRIAEIGHVHRYEVSGALSGLMRVRAFHQDDAH-VFLTPEQVEEETLNILNLV 398

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   GL+   +   + P                E     S +  +    +      +
Sbjct: 399 SELYSTFGLEYH-LELSTRP----------------EKDTIGSDELWELATSALERALIN 441

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             +   I     A Y    D+H           K    R  + G I              
Sbjct: 442 SNTPFIINPGDGAFYGPKIDIHV----------KDAIQRTWQCGTI-QLDMFLPERFELE 490

Query: 302 FKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +  A G+     M    +     R +  +IE       +                     
Sbjct: 491 YTNAQGEKSTPIMLHRALFGSIERFLGILIEHFKGKFPLWLSPEHIRLITVA-------D 543

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   +++ A   K+G  V  DD  E +  +   A  +     V +G + + ++ + I+
Sbjct: 544 RHQPHAKELAAAWQKLGLVVTVDDSNESVSKKIRNAQNMQVNYMVTLGDREIEENTLAIR 603

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R   +   M++E  IN      ++
Sbjct: 604 TRDNRVLNAMTVETFINTILEEKNS 628


>gi|240138908|ref|YP_002963383.1| threonine tRNA synthetase [Methylobacterium extorquens AM1]
 gi|240008880|gb|ACS40106.1| threonine tRNA synthetase [Methylobacterium extorquens AM1]
          Length = 675

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 142/443 (32%), Gaps = 40/443 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      ++ L      +   G+  W   G      + A +R    +  
Sbjct: 232 YLHRLEEAERRDHRRLGKEMDLF--HFQEEGPGVVFWHAKGWTIFQELIAYMRRRL-KGD 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG +  Y + M       +     +     P +      IF+ 
Sbjct: 289 YAEVNAPQILDKSLWETSGHWGWYRENMFAAQSAGEEAEDKRWFALKPMNCPGHVQIFKH 348

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + +         
Sbjct: 349 GLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIFCTEDQLAAECLKIN-D 407

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L  +   G   I ++  + P     S      A+   TQV             E    
Sbjct: 408 LILSTYADFGFDQILVKLSTRPEKRVGSDALWDHAEAVMTQVL---------AQIEEQSG 458

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             I +  ++     A Y    +     L D++  + +     ++    F    ++     
Sbjct: 459 GRIKT--AVNPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVD----FNLPERFD---- 505

Query: 300 ATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A++      K   V +     G+M     ++     G   +W   V     ++       
Sbjct: 506 ASYIDADSQKKPPVMIHRAICGSMERFTGILIEHFAGHFPLWLAPVQVVVATIT------ 559

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   L + G  V  D   E+I  +     L   P+ + +G +   +  V +
Sbjct: 560 SDADPYAREVVRVLERAGLRVEADLRNEKINYKVREHSLAKVPVLLALGRREAEERTVSV 619

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +     M+L+  +      
Sbjct: 620 RRMGSQKTTTMTLDAALAAFIEE 642


>gi|110633361|ref|YP_673569.1| threonyl-tRNA synthetase [Mesorhizobium sp. BNC1]
 gi|123058100|sp|Q11JM1|SYT_MESSB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110284345|gb|ABG62404.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chelativorans
           sp. BNC1]
          Length = 656

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 145/443 (32%), Gaps = 40/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      ++ L      +   G+  W   G +   N+ + +R   +   
Sbjct: 235 YLQMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWRMFQNLVSYMRRRLDGV- 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG +  Y + M ++   +++A         P +      IF+ 
Sbjct: 292 YQEVNAPQVLDHSLWQTSGHWGWYKENMFKVECADEEAEDKRTFALKPMNCPGHVQIFKH 351

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R E      G+MR R F   DA+ F    + ++        
Sbjct: 352 GLKSYRDLPIRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIFCTEDQLAEECLKIN-D 410

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L  +   G + I +   + P     S      A+  E      +   +       T  
Sbjct: 411 LILSTYADFGFEEIQVFFSTRPEKRVGSDALWDHAE--EIMGGVLEQIAERSGGRIKTAI 468

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +             A Y    D     L D++    +     ++      FG        
Sbjct: 469 N---------PGDGAFYGPKFDY---VLKDAIGRQWQCGTTQVDFNLPERFG-------- 508

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +   D +      +     G+M     ++  ++ G   +W   +     ++       
Sbjct: 509 AFYIDKDSEKKQPVMIHRAICGSMERFLGILIENYAGHFPLWFAPLQVVVATIT------ 562

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   ++  +L   G     D   E+I  +     L   P+ ++ G +   +  V I
Sbjct: 563 SDADDYARQVTQQLKAAGLTAEADLRNEKINYKVREHSLAKVPVILVCGKREAEEGSVNI 622

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  +  + L E I      
Sbjct: 623 RRLGSRDQASLLLAEAIAQLIDE 645


>gi|62422036|gb|AAX82600.1| putative threonyl-tRNA synthetase [Lactobacillus reuteri]
          Length = 601

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 151/441 (34%), Gaps = 36/441 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              +   RD  +  ++L L    +  +   G+  WLP G      +   I + +   G  
Sbjct: 189 KRQEAKERDHRVIGNQLDLF--FVDPKVGAGLPYWLPKGATIRRTIERYIIDREVADGHQ 246

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + D +  SG +  Y  +M    D  D  M    P +      +++ HI+SYR
Sbjct: 247 HVYTPVLMNLDAYKTSGHWAHYRDDMFPPMDMGDGEMLESRPMNCPSHIQVYKHHIRSYR 306

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    ++ +  R E      G+ R RE  + D ++F    +     + K+    + ++
Sbjct: 307 DLPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVTLDQIRSE-FAKILKLIMSVY 365

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               +     R                       + + + +  +       +  DD+   
Sbjct: 366 EDFDITDYSFRLSLRD-------------PKNVKKYYANDEMWEKSQSMLKSAMDDLNLD 412

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
               E   A Y    D+  +    +L  ++ +S   ++    F    ++      ++ G 
Sbjct: 413 YYEAEGEAAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLSYVGQ 461

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DGK+H    +    +G M    A +   + G    W             I  +++   + 
Sbjct: 462 DGKEHQPVMIHRGVVGTMERFMAYLTEIYKGAFPTWLAPEQVH-----IIPVNEEAHGEY 516

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  ++      V      E++G +   A     P  ++VG    + + V +      
Sbjct: 517 ADNLAKKMKAANIRVNVAHRNEKMGYKIREAQTQKVPYTLVVGDDEKNSNGVSVSKYGEK 576

Query: 425 IREDMSLEEVINYASHRFSNN 445
            + +MS E  +N      ++ 
Sbjct: 577 EQNEMSQEAFMNEILEDIASY 597


>gi|313619139|gb|EFR90927.1| prolyl-tRNA synthetase [Listeria innocua FSL S4-378]
          Length = 409

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 120/271 (44%), Positives = 164/271 (60%), Gaps = 1/271 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  + AI+REE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQVASGIYSYLPLAILTLRKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA EM +P LQ A+LW ESGR+  YG E++RL DR  +  + GPTHEE++T + R 
Sbjct: 61  LEAIGAAEMLMPALQPAELWHESGRWADYGPELMRLKDRAARDFVLGPTHEELITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E    ++  M  +
Sbjct: 121 EIKSYKRLPITLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDETFELMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S    D+   +E     
Sbjct: 181 YSNIFSRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSD-ASDYAANTEMAPVL 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +   +  +E+     A  +      + + L
Sbjct: 240 YMEKKSHELEKELEKVATENQKTIADIVEFL 270


>gi|227551759|ref|ZP_03981808.1| proline--tRNA ligase [Enterococcus faecium TX1330]
 gi|227179064|gb|EEI60036.1| proline--tRNA ligase [Enterococcus faecium TX1330]
          Length = 569

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 114/273 (41%), Positives = 160/273 (58%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--D 238
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  + C     D+    E     
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTI-CYSTESDYAANLEMATSY 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +    S  + +E           +     F S+
Sbjct: 240 YVSKKSHETQLELEKVATPNVKSIDEVADFFSV 272



 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 65/186 (34%), Positives = 105/186 (56%), Gaps = 3/186 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +  D  P+N  V    RGIE+GHIF  GT+YS  M AT    +G++ +V MG Y
Sbjct: 382 EDLRFVQEGDPSPDNNGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D +GI WP  +APF + ++ +   D+   +   ++   ++K G 
Sbjct: 442 GIGVSRLLSAIVEQHSDEQGINWPKGIAPFDLHIVQMNLKDEYQTNLTNELEEAMTKAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA +DL+G P+++ VG K V    VE+K + TG   ++  EE+ N 
Sbjct: 502 EVLVDDRNERAGVKFADSDLIGCPIRITVGKKAVE-GIVEVKIKKTGEMVEVRKEELANT 560

Query: 438 ASHRFS 443
                +
Sbjct: 561 LPILLN 566


>gi|111224550|ref|YP_715344.1| threonyl-tRNA synthetase [Frankia alni ACN14a]
 gi|111152082|emb|CAJ63808.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) [Frankia alni
           ACN14a]
          Length = 692

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 68/447 (15%), Positives = 138/447 (30%), Gaps = 37/447 (8%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L +   RD      +L L +    +   G+  + P G      +    R     
Sbjct: 280 KAYQTRLAEAEKRDHRRLGAELDLFS-FPTEIGPGLAVFHPKGGAIRTAMEDYARRRHIE 338

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHI 122
            G   ++ P +  +DL+  SG  D +   M    +          P +  +   I+RS  
Sbjct: 339 AGYSFVNTPHITKSDLYEISGHLDWFADGMYPPMELDGGTDYYLKPMNCPMHILIYRSRG 398

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP   ++    +R E      G+ R R     DA+ F    +      + +    
Sbjct: 399 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDAHLFCAREQLPAEL-DSVLNFV 457

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L +    GL    +   + P                E +   +    +            
Sbjct: 458 LGLLRDYGLSDFYLELSTKP----------------EGKAVGTDAEWEEATELLRAAAQK 501

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +     A Y       + +  D++    ++S   ++    F    ++ L   A 
Sbjct: 502 QDLELVLDAGGGAFYGPKI---SVQARDAIGRTWQLSTIQVD----FQLPQRFDLEYQAA 554

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 +     +     G +    A++    +      P  +AP +   I I       
Sbjct: 555 ---DGTRQRPFMIHRALFGTIERFLAILL---EHYAGALPPWLAPVQAIGIPIT---DEH 605

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               + + A+LS  G  V  D   +++  +   A     P  ++ G + V+   V  + R
Sbjct: 606 VPYLDGVAAKLSAHGVRVEVDSSDDRMQKKIRTAQKQKVPFMLLAGDEDVAKGAVSFRFR 665

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPV 448
               R  + +++ +       +    V
Sbjct: 666 DGTQRNGVPVDDAVAEILDAVTRRLQV 692


>gi|123965897|ref|YP_001010978.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
 gi|166225479|sp|A2BVR0|SYT_PROM5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123200263|gb|ABM71871.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
          Length = 638

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 143/445 (32%), Gaps = 40/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   I +   RD      K  L    I + S G+  W P G      +   IRE   
Sbjct: 228 LTNYLKRIEEAEKRDHRKLGKKHSLF--HIQEESPGMIFWHPNGWIIYQILEKYIREILR 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +   +E+  P      LW +SG ++ +  +M       ++     P +      +F   +
Sbjct: 286 KNEYLEIKTPQAVDKSLWEKSGHWEKFRDDMFT-TASENRTYAIKPMNCPCHIQVFNQGL 344

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSY++LP    +     R+E      G+MR R F   DA+ F  T E  +   +      
Sbjct: 345 KSYKDLPLRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIFC-TEEQIQEEVSTFIDLV 403

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +++  G   I ++  + P     S +    ++   T+   +K+      P E      
Sbjct: 404 FEVYNTFGFDEIIIKLSTRPEKRVGSEDIWDKSEEALTEALNNKNLKWELQPGE------ 457

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y    +     L D L    +     ++                AT
Sbjct: 458 -----------GAFYGPKIEF---SLKDCLNRIWQCGTIQVDFSMPVRLD--------AT 495

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           F   + +      +    +G+      ++   ++ K  IW        +S+       + 
Sbjct: 496 FVDINNEKKSPVMLHRAILGSFERFIGILIEQYEAKFPIWLAPTQIILLSIT------ER 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C +    L+  G     D   E+IG +   + L   PL  IVG K    + V ++ 
Sbjct: 550 NIKKCIEFNNLLNTKGYRSKIDIRNEKIGYKIRESTLARIPLIGIVGDKEQELNSVTLRA 609

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
                     L+ +    +      
Sbjct: 610 LDGSNLGIYELDNLFKLMNTLIEKK 634


>gi|323337178|gb|EGA78432.1| Ths1p [Saccharomyces cerevisiae Vin13]
          Length = 734

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 156/440 (35%), Gaps = 40/440 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           + + RD      +  L   + ++ S G   WLP G +  + +  ++R E  + G  E+  
Sbjct: 324 EASMRDHRKIGKEQELF--LFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVIT 381

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + ++ LW  SG + +Y + M       +      P +      +F+S  +SYR LP+ 
Sbjct: 382 PNMYNSKLWETSGHWANYKENMFTFEVEKET-FGLKPMNCPGHCLMFKSRERSYRELPWR 440

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                +  R+E      G+ R R F   DA+ F                +          
Sbjct: 441 VADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCT-----HDQIESEIENIFNFLQ---- 491

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                      I G    EF +   T   +     +  D       +          I  
Sbjct: 492 ----------YIYGVFGFEFKMELSTRPEKYVGKIETWDAAESKLESALKKWGGNWEINA 541

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+    + D+L    + +   ++    F    ++ L   +  + ++  + 
Sbjct: 542 GDGAFYGPKIDIM---ISDALRRWHQCATIQLD----FQLPNRFELEFKSKDQDSESYER 594

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  + A++    +     WP  ++P ++ ++ +    Q      E +  
Sbjct: 595 PVMIHRAILGSVERMTAILT---EHFAGKWPFWLSPRQVLVVPVGVKYQG---YAEDVRN 648

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE--- 427
           +L   G     D  G  +  +     +L +    IVG + +++  V I++R    ++   
Sbjct: 649 KLHDAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDVMEQQGKN 708

Query: 428 -DMSLEEVINYASHRFSNNR 446
             +S+EEV+    +     R
Sbjct: 709 ATVSVEEVLKQLRNLKDEKR 728


>gi|296110556|ref|YP_003620937.1| threonyl-tRNA synthetase [Leuconostoc kimchii IMSNU 11154]
 gi|295832087|gb|ADG39968.1| threonyl-tRNA synthetase [Leuconostoc kimchii IMSNU 11154]
          Length = 654

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 145/441 (32%), Gaps = 35/441 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
              +   RD       L L      +   G+  WLP G      V   I +++   G   
Sbjct: 238 RREEAKERDHRTIGRDLDLF-FTSQEVGSGLPVWLPNGATIRRQVERYITDKELANGYQH 296

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRN 127
           +  P L + +L+  SG +D Y ++M    D  D       P +      +F+   +SYR 
Sbjct: 297 VYTPVLSNLNLYKTSGHWDHYREDMFPPMDMGDGEFLELRPMNCPSHIMVFKHKPRSYRE 356

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP    ++ +  R E       +     +  +     + PE  +  +  +    + ++  
Sbjct: 357 LPIRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVEPEKLEEEFKSILTMMMEVYRD 416

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS-ENTDFDDIISLN 246
             +     R                  D   T+ +   D M     +      DD+    
Sbjct: 417 FNITDYRFRLS--------------YRDPKNTEKYFDDDEMWEKSQAQLKRAMDDLKLDY 462

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV  +    +L   + +S   ++    F    ++    + T+ GAD
Sbjct: 463 YEAEGEAAFYGPKLDVQTKT---ALGGEETMSTIQLD----FLLPERF----NLTYIGAD 511

Query: 307 GKDHYV--QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           G+D++    +    +G M    A +   + G    W        + +  I  +     D 
Sbjct: 512 GQDNHRPVMLHRGIVGTMERFTAYLIEMYKGAFPTWLS-----PLQVQIIPVNLAAHGDY 566

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +   L   G  V  +    ++G     A     P  +++G   V++  V I+     
Sbjct: 567 ANAVQKELQAAGLRVNVEKKEAKMGYLIREAQTNKVPYTLVLGDSEVNEQTVTIRKYGEE 626

Query: 425 IREDMSLEEVINYASHRFSNN 445
             + ++L +  N+     +N 
Sbjct: 627 KTQTVALADFKNHILADVANY 647


>gi|157413014|ref|YP_001483880.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
 gi|166987324|sp|A8G3W3|SYT_PROM2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157387589|gb|ABV50294.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
          Length = 638

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 134/442 (30%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      K  L    I + S G+  W P G      +   IRE   +  
Sbjct: 231 YLKRIEEAEKRDHRKLGKKHSLF--HIQEESPGMIFWHPNGWTIYQVLEKYIREILKKND 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P      LW +SG ++ +  +M       ++     P +      +F   +KSY
Sbjct: 289 YLEIKTPQAVDKSLWEKSGHWEKFRDDMFT-TASENRTYAIKPMNCPCHIQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +     R+E      G+MR R F   DA+ F  T E  +   +        +
Sbjct: 348 KDLPIRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIFC-TEEQIQEEVSTFIDLVFEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P     S E                   D    +     D+   
Sbjct: 407 YKTFGFDEIIIKLSTRPKKKVGSEE-----------------IWDKSEEALTKALDNKNL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++                AT+  
Sbjct: 450 KWELQPGEGAFYGPKIEF---SLKDCLNRVWQCGTIQVDFSMPIRLD--------ATYVD 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +      +    +G+      ++   ++ K  IW        +S+           +
Sbjct: 499 IDNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIWLAPYQLTLLSIT------DRNIE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C K    L   G     D   E+IG +   A L   PL  ++G K      V ++    
Sbjct: 553 KCLKFNELLINNGYRSTVDIRNEKIGYKIREATLERVPLIAVIGDKEEEIDSVSLRALDG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                 +L  +           
Sbjct: 613 RNLGIFNLPNLCKLMDGLIEKR 634


>gi|167740276|ref|ZP_02413050.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 14]
          Length = 568

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 127/225 (56%), Positives = 162/225 (72%), Gaps = 1/225 (0%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE NR GAIE+ 
Sbjct: 1   MKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREEMNRAGAIELL 60

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+ IKSYR +P 
Sbjct: 61  MPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARNQIKSYRQMPV 120

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +Y+RIF R+GL
Sbjct: 121 NFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDAYVRIFTRIGL 180

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +  P+ A++G IGG  SHEF V+ADTGE  +       DF    E
Sbjct: 181 EFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPT-SDFAANVE 224



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 69/179 (38%), Positives = 100/179 (55%), Gaps = 3/179 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 372 PEPVVADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 431

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D KGI+W +++APF++ L  +        R+A +K+YA 
Sbjct: 432 VMGCYGIGITRILGAAIEQNFDDKGIVWAEAIAPFEVVLCPMGYDRSDAVREAADKLYAD 491

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       + 
Sbjct: 492 LAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGRRDAEATLLP 550


>gi|324505892|gb|ADY42525.1| Threonyl-tRNA synthetase [Ascaris suum]
          Length = 706

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 68/432 (15%), Positives = 145/432 (33%), Gaps = 40/432 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD         L     H  S G   W P G    + +   +R +  + G  E+ 
Sbjct: 296 EEAAKRDHRKIGRDQELF--FFHPLSPGAAFWYPKGAHIYNTLCNFMRNQYRKRGFTEVI 353

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + ++ LW +SG +  Y   M ++    +      P +      ++    +++  LP 
Sbjct: 354 SPNMFNSKLWEQSGHWQHYSDGMFKIEVEKEL-FGLKPMNCPGHCLMYSHMPRTHNELPM 412

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            +    +  R+EL     G+ R R F   DA+ F    + +             ++  + 
Sbjct: 413 RYADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRPDQINSE-IKGCIDFINYVYVDVF 471

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P                E          D          D+      + 
Sbjct: 472 GFTFKLNLSTRP----------------EEGFLGDIATWDHAEAELKKALDESGHPWELN 515

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    DV    + D+L    + +   ++    F    ++ L   A F   + + 
Sbjct: 516 PGDGAFYGPKIDV---TIQDALKRYHQCATIQLD----FQLPQRFDL---AYFDENNERK 565

Query: 310 HYVQMGSYGIGAMRVVAAVIESSH-DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
             V +    +G++  + A++  +             A             +  R   +++
Sbjct: 566 RPVMVHRALLGSIERMTAILTENFGGKWPFWLSPRQAKVITV-------HESQRVYAKEV 618

Query: 369 YARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             +L + G +V +D+M  + +  Q   A L  F   ++VG K   +  V ++ R   +R 
Sbjct: 619 QKKLYEAGFEVEFDEMCSDTLNKQIRNAQLAQFNFILVVGPKEAQNGTVNVRTRDNAVRG 678

Query: 428 DMSLEEVINYAS 439
           ++ L+++I   +
Sbjct: 679 EVKLDDLIEKFT 690


>gi|119716597|ref|YP_923562.1| threonyl-tRNA synthetase [Nocardioides sp. JS614]
 gi|166225470|sp|A1SJ90|SYT_NOCSJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119537258|gb|ABL81875.1| Ser-tRNA(Thr) hydrolase [Nocardioides sp. JS614]
          Length = 668

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 141/444 (31%), Gaps = 32/444 (7%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              I +   RD       L L +    +   G+  + P G      +   +R+     G 
Sbjct: 255 LHRIEEAERRDHRKLGRDLDLFS-FPDEIGSGLPVFHPKGGVIKRVMEDYVRQRHVEEGF 313

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P +    L+  SG    YG+ M    D +         +  +   IFRS  +SYR
Sbjct: 314 EYVGTPHIAKEGLFYTSGHLPYYGEAMFPPLDVDGMDYRLKAMNCPMHNLIFRSRQRSYR 373

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP   ++    +R E      G+ R R F   D++S+    +        +    L +F
Sbjct: 374 ELPLRLFEFGHVYRHEKSGVIHGLTRVRGFAQDDSHSYVTKEQAPAE-IKHLLDFCLGLF 432

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL    +   +               D+   +   S +                   
Sbjct: 433 RDFGLDDFYLELSTRD-------------DSKPDKFIGSDEDWAVATKVLEDVCIASGLE 479

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                   A Y       + +  D++    ++S    +      F    +      +  A
Sbjct: 480 LVPDPGGAAYYGPKV---SVQARDAIGRTWQMSTIQYD------FNQPSADRFDLHYTAA 530

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG       + S   G++     V+    +     +P  +AP ++  I I    +   D 
Sbjct: 531 DGSRQQPVMIHSAKFGSIERFIGVLV---EHYAGAFPPWLAPVQVQAIPIA---ERHNDY 584

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  R+   G  V  DD  +++  +   A LL  P  +I G   V+   V  ++R   
Sbjct: 585 LYDVAKRMQAQGLRVEVDDSDDRMQKKIRNAQLLKVPFMMIAGDDDVAAGAVSFRYRDGR 644

Query: 425 IREDMSLEEVINYASHRFSNNRPV 448
               + L+E I   +   ++   V
Sbjct: 645 QDNGVPLDEAIRRVADAVASREQV 668


>gi|255323684|ref|ZP_05364814.1| threonyl-tRNA synthetase [Campylobacter showae RM3277]
 gi|255299398|gb|EET78685.1| threonyl-tRNA synthetase [Campylobacter showae RM3277]
          Length = 606

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 154/437 (35%), Gaps = 40/437 (9%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      ++ L T    +   G+  WLP G +    +  I+ +     G   +
Sbjct: 205 IEEAKKRDHRKLGVEMKLFT-FDDEVGGGLPIWLPNGGRLRSKLEQILYKAHRDRGYEPV 263

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P L  AD+W +SG Y +Y + M      ++      P +      +++S I+SYR+LP
Sbjct: 264 RGPELLKADVWKKSGHYANYKENM-YFTTIDEAEYGIKPMNCVGHIKVYQSDIRSYRDLP 322

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F++  +  R E      G+ R REF   D++ F + P   K +  ++     +I    
Sbjct: 323 LKFFEYGVVHRHEKSGVLHGLFRVREFAQDDSHIFCM-PSQIKENILEILKFAGKIMENF 381

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G                          T   +     +  +    +     D+      I
Sbjct: 382 GFHYEMEI------------------STKPAKAIGGDEIWETATKALKEALDENGFKYGI 423

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    D+   K+ D+L    +     ++    F    ++       +  A+ +
Sbjct: 424 DEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPERFD----LGYIDANNE 472

Query: 309 DHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 +    +G+      ++     G+   +         + + I        D  + 
Sbjct: 473 RQQPVMLHRALLGSFERFIGILIEHTGGELPFF------VAPTQVVIVPISDAHLDYAKT 526

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L K+G D       E +  +   A+    P+  ++G   V++S + ++ R T  ++
Sbjct: 527 VAKELRKIGVDSEIASKNESLNKRIRTAEKQRVPMIAVLGDNEVANSAIALRDRTTREQK 586

Query: 428 DMSLEEVINYASHRFSN 444
           DM L+E +     + + 
Sbjct: 587 DMKLDEFVGLLKSKLAE 603


>gi|110799310|ref|YP_697117.1| prolyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|168211250|ref|ZP_02636875.1| prolyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|123049576|sp|Q0TMM3|SYP_CLOP1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110673957|gb|ABG82944.1| prolyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|170710790|gb|EDT22972.1| prolyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
          Length = 570

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 129/293 (44%), Positives = 169/293 (57%), Gaps = 6/293 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR G++ + + GIY+++PLG K ++NV  I+REE
Sbjct: 1   MKMSNMLVGTLREVPAEAEIESHKLMLRAGLMRKMAAGIYNYMPLGLKVIENVKNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     L  A+LW ESGR+D+YG EM RL DR+++    GPTHEEV TDI R+
Sbjct: 61  MNNAGAQEFLASALIPAELWQESGRWDAYGAEMFRLKDRHNRDFCLGPTHEEVFTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKD YSFD   EG   +Y KM  +
Sbjct: 121 EIKSYKQLPLNLYQIQTKYRDERRPRFGVMRSREFIMKDGYSFDKDQEGLDLAYEKMRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+ IF+R GL +  + A+SG IGG  S EF+V ++ GE  V       D+    E     
Sbjct: 181 YVNIFNRCGLDAKAVAADSGAIGGSGSAEFMVKSEVGEDDVVFCTAC-DYAANIEKAP-- 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
              S     E+         +    K  + L +    S + I    IF    K
Sbjct: 238 ---STPEHAEKEELMEVEKVETPAVKSIEDLAKFFECSPKKIAKTLIFQADDK 287



 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 103/191 (53%), Gaps = 3/191 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 D  N  + +  PE  +    +RG EVGHIF  GTKYS  M ATF   DGK    
Sbjct: 375 FEGIVGDFRNVTIGEKCPECGKEITISRGTEVGHIFKLGTKYSESMGATFIDEDGKAKPF 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R VA++IE  +D  GIIWP  VAP+ +S+I     ++      E+IY  L
Sbjct: 435 IMGCYGIGVTRTVASIIEQHNDENGIIWPLEVAPYHVSVIPANVKNEEQATKAEEIYNEL 494

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K+G +   DD  E+ G +F  ++L+G P+++ VG K + + +VE K R  G  E +S+E
Sbjct: 495 RKMGVEALLDDRKERAGVKFKDSELMGIPMRITVG-KMIGEGQVEFKLRNGGEVETLSIE 553

Query: 433 EVINYASHRFS 443
           EV N     F 
Sbjct: 554 EVYNRVREEFE 564


>gi|269123109|ref|YP_003305686.1| prolyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
 gi|268314435|gb|ACZ00809.1| prolyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
          Length = 574

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 122/237 (51%), Positives = 161/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+   +E P++AE  SH+LMLR  MI Q ++G+Y++LPLG K L  +  I+REE
Sbjct: 1   MRFSKSFIKTYKEVPKEAETISHQLMLRASMIKQLTRGVYTYLPLGLKVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+  A E+ +P LQ ADLW ESGR+ SYG E++RL DRN++  + GPTHEEV+ D+FR+
Sbjct: 61  LNKINAQEILMPVLQPADLWQESGRWFSYGAELMRLHDRNNRDFVLGPTHEEVIVDLFRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP   YQIQ KFRDE RPRFG+MR REF+MKDAYSF LT E     YNK+  +
Sbjct: 121 IVTSYKDLPLNVYQIQTKFRDERRPRFGLMRGREFIMKDAYSFHLTQECLDREYNKVKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y +IF R GL    + A++G IGG  SHEF+VLA +GE  +  S    D+    E  
Sbjct: 181 YCKIFERCGLNFRAVDADTGSIGGSESHEFMVLASSGEDDILYSDK-SDYAANVEKA 236



 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 79/205 (38%), Positives = 107/205 (52%), Gaps = 3/205 (1%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +      Y    D+   +  D +L       ARGIEVGHIF  G KYS  M+  
Sbjct: 372 GHHYINMNLSDIHYDLVGDIRKAQKGDKALDGGTLDIARGIEVGHIFKLGKKYSAAMNTK 431

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                G    V MG YGIG  RV AA IE + D  GIIWP S+AP+ + LI +   D++ 
Sbjct: 432 VLNDKGVAETVIMGCYGIGVSRVAAAAIEQNFDDFGIIWPKSIAPYLVDLILVNVKDEIA 491

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           ++  EKIY+ +     DV +DD  E+ G +F  ADL+G PL+VIVG K   +  VEIKHR
Sbjct: 492 KEVSEKIYSDMLLNNIDVIYDDRDEKAGFKFKDADLIGIPLKVIVG-KGAVNGMVEIKHR 550

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                 ++ +E+VI+Y    F  N+
Sbjct: 551 DGSFSGEIKVEDVISYIK-EFEKNK 574


>gi|110801651|ref|YP_699687.1| prolyl-tRNA synthetase [Clostridium perfringens SM101]
 gi|123341520|sp|Q0SQC0|SYP_CLOPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110682152|gb|ABG85522.1| prolyl-tRNA synthetase [Clostridium perfringens SM101]
          Length = 570

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 129/293 (44%), Positives = 169/293 (57%), Gaps = 6/293 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR G++ + + GIY+++PLG K ++NV  I+REE
Sbjct: 1   MKMSNMLVGTLREVPAEAEIESHKLMLRAGLMRKMAAGIYNYMPLGLKVIENVKNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     L  A+LW ESGR+D+YG EM RL DR+++    GPTHEEV TDI R+
Sbjct: 61  MNNAGAQEFLASALIPAELWQESGRWDAYGAEMFRLKDRHNRDFCLGPTHEEVFTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKD YSFD   EG   +Y KM  +
Sbjct: 121 EIKSYKQLPLNLYQIQTKYRDERRPRFGVMRSREFIMKDGYSFDKDQEGLDLAYEKMRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+ IF+R GL +  + A+SG IGG  S EF+V ++ GE  V       D+    E     
Sbjct: 181 YVNIFNRCGLDAKAVAADSGAIGGSGSAEFMVKSEVGEDDVVFCTAC-DYAANIEKAP-- 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
              S     E+         +    K  + L +    S + I    IF    K
Sbjct: 238 ---STPEHAEKEELMEVEKVETPAVKSIEDLAKFFECSPKKIAKTLIFQADDK 287



 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 103/191 (53%), Gaps = 3/191 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 D  N  + +  PE  +    +RG EVGHIF  GTKYS  M ATF   DGK    
Sbjct: 375 FEGIVGDFRNVTIGEKCPECGKEITISRGTEVGHIFKLGTKYSESMGATFIDEDGKAKPF 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R VA++IE  +D  GIIWP  VAP+ +S+I     ++      E+IY  L
Sbjct: 435 IMGCYGIGVTRTVASIIEQHNDENGIIWPLEVAPYHVSVIPANVKNEEQATKAEEIYNEL 494

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K+G +   DD  E+ G +F  ++L+G P+++ VG K + + +VE K R  G  E +S+E
Sbjct: 495 RKMGVEALLDDRKERAGVKFKDSELMGIPMRITVG-KMIGEGQVEFKLRNGGEVETLSIE 553

Query: 433 EVINYASHRFS 443
           EV N     F 
Sbjct: 554 EVYNRVRKEFE 564


>gi|75676225|ref|YP_318646.1| threonyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
 gi|74421095|gb|ABA05294.1| Ser-tRNA(Thr) hydrolase [Nitrobacter winogradskyi Nb-255]
          Length = 686

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 134/443 (30%), Gaps = 39/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W   G      V A +R       
Sbjct: 256 YLKQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHAKGWTIFQAVIAYMRRRL-AED 312

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M       D     +     P +      +F+ 
Sbjct: 313 YDEVNAPQMLDKSLWETSGHWEWYRENMFAAQSAGDEAEDKRWFTIKPMNCPGHVQLFKH 372

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + +        +
Sbjct: 373 GLKSYRDLPLRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVFCTEEQLADECLKINEL 432

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                        + ++  + P     S      A+     V       +  I +E    
Sbjct: 433 ILSTYADFGFDGELTVKLSTRPEKRVGSDAAWDHAEAVMADVLKHIAASNNRIRTE---- 488

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                         A Y    +     L D++  + +     ++      FG        
Sbjct: 489 --------TNPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVDFNLPERFG-------- 529

Query: 300 ATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +     GK   V +     G++     ++     G   +W   V     ++ +     
Sbjct: 530 AFYIDADGGKKAPVMVHRAICGSIERFIGILIEHFAGHFPLWLAPVQAVVTTITSDGD-- 587

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  + + +   + G  V  D   E+I  +     L   P  ++VG K      V I
Sbjct: 588 ----EYAKVVASAARRAGLRVELDLRNEKINYKVREHSLAKIPALLVVGKKEAETQSVSI 643

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  ++     E I      
Sbjct: 644 RRLGSDGQKVTPTGEAIAALVAE 666


>gi|291277468|ref|YP_003517240.1| prolyl-tRNA synthetase [Helicobacter mustelae 12198]
 gi|290964662|emb|CBG40517.1| prolyl-tRNA synthetase [Helicobacter mustelae 12198]
          Length = 577

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 117/255 (45%), Positives = 163/255 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYF+P L+ENP+DA + SH+ ++R G I Q   GIY++LPLG+K L+ ++ IIREE
Sbjct: 1   MRFSKYFIPTLKENPKDAVLKSHQYLVRGGFIEQIGSGIYNFLPLGKKVLEKISQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+EM+   +  ++LW +SGRY+ YGKE+LR  DR +   + GPT EE +T++ ++
Sbjct: 61  MNEAGALEMAAGFVVPSELWKQSGRYEKYGKELLRFKDRRENEFVLGPTCEEALTNLAKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY++LP  FYQI LKFRDE+RPRFG+MR REF+MKDAYSF    E     +  M  +
Sbjct: 121 LIKSYKSLPLNFYQIHLKFRDEVRPRFGLMRGREFIMKDAYSFHANFEDLDREFENMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    + A+SG IGG  S EF+VLAD GE  +   ++              
Sbjct: 181 YCRIFTRLGLDFRVVDADSGAIGGSGSKEFMVLADCGEDIIVVCENCDYAANIEAAKRKK 240

Query: 241 DIISLNSIVEQWTAP 255
            + S+ +   ++   
Sbjct: 241 KLSSIEAPRAEFAKF 255



 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/217 (28%), Positives = 98/217 (45%), Gaps = 1/217 (0%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           TG   +   ++  D        +  D   +   +  +     A           +  + K
Sbjct: 354 TGAKWIIFDEELRDERDLICGANERDYHFVGVDLSTFEGLVYADLVNVQAGDVCTCCDGK 413

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               +GIEVGHIF  GTKYS  M A F   +GK     MG YGIG  R++ A++E   D 
Sbjct: 414 LTHKKGIEVGHIFKLGTKYSQAMQAVFLDQNGKSQAFVMGCYGIGVSRLLPAILEQKSDA 473

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G +W  + APFK+ +I     +    +  +++Y  L + G DV  DD  E+ G +    
Sbjct: 474 LGCVWSSTTAPFKVVIIPSNKKNPSEVEFSQRLYENLLQRGVDVLLDDRDERFGFKMKDF 533

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +L+GF   ++VG K +   +VEI  R    ++ +S +
Sbjct: 534 ELIGFEFAIVVG-KELEGGRVEIFEREGMQKQVVSAD 569


>gi|241764278|ref|ZP_04762308.1| threonyl-tRNA synthetase [Acidovorax delafieldii 2AN]
 gi|241366347|gb|EER60877.1| threonyl-tRNA synthetase [Acidovorax delafieldii 2AN]
          Length = 639

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 137/443 (30%), Gaps = 36/443 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L    I  H+ G+  W P G      V   +R      
Sbjct: 230 QYLTMLEEAEKRDHRKLGRELDLF--HIDDHAPGVVFWHPKGWAVWQQVEQYMRRVYRDN 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E+  P L    LW ++G +D Y   M    +   +     P +      IF+  IKS
Sbjct: 288 GYLEVKGPQLLDKTLWEKTGHWDKYRDNMFT-TESEKRDYALKPMNCPGHILIFKQGIKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + +     R+E      G+MR R F   D + F                   +
Sbjct: 347 YRDLPLRYGEFGQCHRNEPTGGLHGIMRVRGFTQDDGHIFCTEDHILPECTAYT-ALLQK 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G  +I  +  + P     S E                   D    +         
Sbjct: 406 VYKDFGFSNIIYKVATRPEARIGSDE-----------------SWDKAEHALMESLRASG 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I     A Y    +     L D++    +     ++              + A + 
Sbjct: 449 CEFEIAPGDGAFYGPKIEY---TLKDAIGRQWQCGTMQVDFSMP--------ERLDAEYV 497

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG  H    +    +G++     ++   H G    W          L    A    CR
Sbjct: 498 GEDGARHRPVMLHRAIVGSLERFIGILIEQHSGALPTWL--APVQISVLNITDAQADYCR 555

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   K+   L      V  D   E+I  +     L   P  ++ G K  +   V ++ R 
Sbjct: 556 EIAAKLQKLLPHQDLRVGLDLRNEKITYKIREHSLQKLPYILVAGDKEKAAGAVAVRARG 615

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 MS+E      +   ++ 
Sbjct: 616 NRDLGVMSVEAFAELIAQDIASK 638


>gi|293556646|ref|ZP_06675211.1| prolyl-tRNA synthetase [Enterococcus faecium E1039]
 gi|291601181|gb|EFF31468.1| prolyl-tRNA synthetase [Enterococcus faecium E1039]
          Length = 569

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 114/273 (41%), Positives = 160/273 (58%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK  +P L+E P DAE+ SH+++LR G I Q S GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MRQSKILIPTLREVPNDAEVLSHQILLRAGYIRQVSAGIYSYLPLANRVLEKLKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P +  A+LW ESGRY++YG  + R  DRND+ MI GPTHEE  TD+ R+
Sbjct: 61  FEKIGAVEMLMPAILPAELWEESGRYETYGPNLYRFKDRNDRKMILGPTHEETFTDLMRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG++R REF+MKDAYSF  T E    +Y     +
Sbjct: 121 EINSYKKLPLNLYQIQPKYRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYKDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--D 238
           Y  +F R GL+   +  + G +GG  S EF+ +++ GE  + C     D+    E     
Sbjct: 181 YTEVFKRCGLEFRSIIGDGGAMGGKDSKEFMAISEIGEDTI-CYSTESDYAANLEMATSY 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +    S  + +E           +     F S+
Sbjct: 240 YVSKKSHETQLELEKVATPNVKSIDEVADFFSV 272



 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 117/231 (50%), Gaps = 6/231 (2%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVHNEKLFDSLPEN 274
           + + +V+  +   D       T  ++       V         +  D+   +  D  P+N
Sbjct: 339 SDDVKVYADRYVQDLANAI--TGANETGFHYKNVNPERDFTVLSYEDLRFVQEGDPSPDN 396

Query: 275 KRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             V    RGIE+GHIF  GT+YS  M AT    +G++ +V MG YGIG  R+++A++E  
Sbjct: 397 NGVLAFTRGIEIGHIFKIGTRYSESMGATVLDENGREKFVIMGCYGIGVSRLLSAIVEQH 456

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D +GI WP  +APF + ++ +   D+       ++   ++K G +V  DD  E+ G +F
Sbjct: 457 SDEQGINWPKGIAPFDLHIVQMNLKDEYQTSLTNELEEAMTKAGYEVLVDDRNERAGVKF 516

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           A +DL+G P+++ VG K V D  VE+K + TG   ++  EE+ N      +
Sbjct: 517 ADSDLIGCPIRITVGKKAV-DGIVEVKIKKTGEMVEVRKEELANTLPILLN 566


>gi|227496236|ref|ZP_03926533.1| threonine--tRNA ligase [Actinomyces urogenitalis DSM 15434]
 gi|226834224|gb|EEH66607.1| threonine--tRNA ligase [Actinomyces urogenitalis DSM 15434]
          Length = 679

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/454 (16%), Positives = 146/454 (32%), Gaps = 45/454 (9%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L +   RD      +L L +    +   G+  + P G      +   + E   R
Sbjct: 243 KAYQTRLAEAAKRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGGMLRHEIEKYVIERHER 301

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHE 111
            G   +  P +  A L+  SG    Y   M                 +  +       + 
Sbjct: 302 AGFDFVHTPEITKAGLFHTSGHLPYYADTMFPPMLADEETDAEGNVTKAGQEYYLKAMNC 361

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IFRS  +SYR LP   +++   +R E      G+ R R F   D++++    +  
Sbjct: 362 PMHNLIFRSRGRSYRELPLRLFEMGHDYRYEKSGVVHGLTRMRGFTQDDSHTYCTREQAP 421

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           +    K    ++ I    GL    +   +    G    +FI   +             + 
Sbjct: 422 EE-IKKQIEFFISILKAFGLTDFYLELSTRDEDGAKKDKFIGSDED-----------WEA 469

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              + +                 A Y       + ++ D++    ++S    +       
Sbjct: 470 ATRTLSQVCASTGLDLVPDPGGAAFYGPKV---SVQVKDAIGRTWQMSTIQYDFNQP--- 523

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
                      +  ADG       + S  +G++     V+    +     +P  +AP ++
Sbjct: 524 -----ERFDLEYTAADGSHQRPIMLHSAKLGSVERFIGVLT---EHYAGAFPAWLAPVQV 575

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            LI +    +   D   ++ ARL + G  V  D   ++ G +   A     P  +I G +
Sbjct: 576 RLIPVA---EAFDDYVTQVAARLRERGVRVETDLSDDRFGKKIRNASKEKVPFTLIAGGE 632

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                 V  + R       + ++E I + +   +
Sbjct: 633 DAEAGAVSFRFRDGEQTNGVPVDEAIEHIADVIA 666


>gi|167817496|ref|ZP_02449176.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 91]
 gi|167847384|ref|ZP_02472892.1| prolyl-tRNA synthetase [Burkholderia pseudomallei B7210]
 gi|167904356|ref|ZP_02491561.1| prolyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
 gi|167912616|ref|ZP_02499707.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 112]
          Length = 568

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 127/225 (56%), Positives = 162/225 (72%), Gaps = 1/225 (0%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE NR GAIE+ 
Sbjct: 1   MKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREEMNRAGAIELL 60

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+ IKSYR +P 
Sbjct: 61  MPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARNQIKSYRQMPV 120

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +Y+RIF R+GL
Sbjct: 121 NFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDAYVRIFTRIGL 180

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +  P+ A++G IGG  SHEF V+ADTGE  +       DF    E
Sbjct: 181 EFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPT-SDFAANVE 224



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 101/179 (56%), Gaps = 3/179 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 372 PEPVVADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 431

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D KGI+WP+++APF++ L  +        R+A +K+YA 
Sbjct: 432 VMGCYGIGITRILGAAIEQNFDDKGIVWPEAIAPFEVVLCPMGYDRSDAVREAADKLYAD 491

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       + 
Sbjct: 492 LAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGRRDAEATLLP 550


>gi|299143351|ref|ZP_07036431.1| proline--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298517836|gb|EFI41575.1| proline--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 584

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 109/242 (45%), Positives = 154/242 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK ++P L+E P DAEIASH+L+LR   I + + GIY++LPLG K +  V  I+REE
Sbjct: 1   MKLSKLYMPTLREVPADAEIASHQLLLRGAFIRKSASGIYTYLPLGYKVIKKVEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  +Q  ++W  S R+D +G EM +L DRND+    GPT EE  T + + 
Sbjct: 61  MDRAGSQEILMSAIQPKEIWEASDRWDRFGPEMFKLRDRNDREFCLGPTAEEYFTTLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPRFG+ R+REF MKDAYSFD TPE  + SY +M+ +
Sbjct: 121 EVKSYKQLPLNLYQIQTKYRDEKRPRFGINRAREFSMKDAYSFDTTPETMQVSYMEMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RLGL    +  ++G +GG  SHEFI L++TGE  +  S          +     
Sbjct: 181 YEKIFDRLGLDYKIVEGDNGAMGGKKSHEFIALSETGEGVIAYSPTGKYAATQEKAKVVY 240

Query: 241 DI 242
           ++
Sbjct: 241 EL 242



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 100/173 (57%), Gaps = 1/173 (0%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             K   ARGIEVG+IF  GTKYS  ++AT+   +GK+  + MGSYG+G  R V A++E +
Sbjct: 397 NEKFKFARGIEVGNIFQLGTKYSEALNATYLDENGKEQLIWMGSYGVGVTRTVTAIVEQN 456

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           +D  GIIWP SVAP+ + +  +   D++  +  EKIY  L ++G +V  DD  E+ G +F
Sbjct: 457 YDENGIIWPMSVAPYHVIVTVVNPKDEIQLELGEKIYNSLVELGHEVLLDDRNERAGVKF 516

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              DL+G P+++ VG +   +  VE   R    + ++  +E I   S    N+
Sbjct: 517 KDRDLIGIPIRITVGKRAAEE-IVEYSLRRETEKTEIFAKEAIEKVSGEIFNS 568


>gi|16331761|ref|NP_442489.1| threonyl-tRNA synthetase [Synechocystis sp. PCC 6803]
 gi|2501062|sp|Q55806|SYT_SYNY3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|1001722|dbj|BAA10559.1| threonyl-tRNA synthetase [Synechocystis sp. PCC 6803]
          Length = 603

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 69/447 (15%), Positives = 148/447 (33%), Gaps = 40/447 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +    +E   RD      +L L          G+  W P G      +   +++EQ + G
Sbjct: 186 YQRRKEEALKRDHRKLGKELGLFI-FADPVGPGLPLWTPKGTIIRTILEDFLKQEQIKRG 244

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR------NDKAMIYGPTHEEVMTDIFR 119
            + +  P +   DL+ +SG +  Y ++M  +          +   +  P +      I++
Sbjct: 245 YLPVVTPHIARVDLFKQSGHWQKYQEDMFPMMAESPEEAAQEMGFVLKPMNCPFHIQIYK 304

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           S ++SYR+LP    +    +R E     G +        D     +TP+     +  +  
Sbjct: 305 SELRSYRDLPLRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPDQLDEEFLSVVD 364

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  L LK+   R                  D    +   S +  +    +     
Sbjct: 365 LILTVFKSLQLKNFKARLS--------------FRDPESDKYIGSDEAWEKAQGAIRRAV 410

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            ++           A Y    D       D+L    ++    ++                
Sbjct: 411 QELEMDYFEAPGEAAFYGPKLDFI---FQDALEREWQLGTVQVDYNLP--------ERFD 459

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +  ADG       +     G++  +  ++   + G   +W           + + A  
Sbjct: 460 LEYIAADGSRQRPVMIHRAPFGSLERLIGILIEEYAGDFPLW------LAPIQVRLLAVS 513

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  + I  ++  +G     D  G+++G     A+    P+  ++G+K V  + + I
Sbjct: 514 DEFLPFAQSIVQQMQSLGLRAEVDTSGDRLGKMIRNAEKQKIPVMAVIGAKEVEANALNI 573

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R +G   ++ + EV+       +N+
Sbjct: 574 RTRASGELGEIPVTEVLEKLQATVTNH 600


>gi|332638317|ref|ZP_08417180.1| threonyl-tRNA synthetase [Weissella cibaria KACC 11862]
          Length = 658

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/437 (15%), Positives = 141/437 (32%), Gaps = 32/437 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
              +   RD      +  L      +   G+  W+P G      +   I + + + G   
Sbjct: 237 RREEAKERDHRKIGAEQDLF-FTSQEVGAGLAVWMPNGAAIRRTLERYIVDREVQDGYQH 295

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRN 127
           +  P + + +L+ +SG +D Y  +M    D  D       P +      +F+   +SYR 
Sbjct: 296 VYTPIMSNLNLYKQSGHWDHYRDDMFPPMDMGDGEFLELRPMNCPSHIMVFKHKPRSYRE 355

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LPF   ++ +  R E       +     +  +     + P+  +  + K+    + ++  
Sbjct: 356 LPFRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVMPDQIEDEFKKILGLMIDVYAD 415

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIISLN 246
             +     R                  D   T+ +   D   +          DD+    
Sbjct: 416 FDITDYRFRLS--------------YRDPENTEKYYDDDDMWEKAQTMLKKAMDDLELDY 461

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV   ++  +L   + +S   ++    F    ++       + G D
Sbjct: 462 FEAEGEAAFYGPKLDV---QIKTALGGEETLSTIQLD----FLLPERFD----VNYVGPD 510

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G+ H   M   GI +         +           +    +     I  +        +
Sbjct: 511 GELHRPVMIHRGIISTMERFTAYLTEMYKGAFPTWLAPHQVR----IIPVNRDAHGKFAK 566

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +  RL K G    ++D  E++G     A     P  +++G + V+++ V I+   +   
Sbjct: 567 DLADRLIKQGIRAEYEDRNEKLGYLIRDAQTSKVPYTLVIGDEEVNNNTVTIRRFGSTDT 626

Query: 427 EDMSLEEVINYASHRFS 443
           +  S++          +
Sbjct: 627 KSKSVDAFEAQLMADIA 643


>gi|297198372|ref|ZP_06915769.1| threonyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197714430|gb|EDY58464.1| threonyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 658

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/440 (16%), Positives = 135/440 (30%), Gaps = 38/440 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L + +  Q   G+  + P G      +    R      G   +  
Sbjct: 254 EAEKRDHRKLGSELDLFS-IPEQIGSGLAVFHPKGGIIRRVMEDYSRRRHEEEGYEFVYT 312

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+ +SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 313 PHATKGKLFEQSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 372

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R+R F   DA+ +    + S+   +K     L +    G
Sbjct: 373 RLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTREQMSEEL-DKTLTFVLGLLRDYG 431

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +                    +   S +  +    +     +         
Sbjct: 432 LTDFYLELST----------------KDPEKFVGSDEVWEEATETLRQVAEKQGLPLVPD 475

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++    F    ++       +   DG  
Sbjct: 476 PGGAAFYGPKI---SVQTKDAIGRTWQMSTIQLD----FNLPERF----ELEYTSPDGSK 524

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +     G++    AV+    +     +P  +AP +   I I        +  EK 
Sbjct: 525 QRPVMIHRALFGSIERFFAVLL---EHYAGAFPAWLAPVQALGIPIG---DAHVEYLEKF 578

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A   K G  V  D   +++  +   A     P  VI G + ++   V  ++R       
Sbjct: 579 AAAAKKQGLRVEVDSSSDRMQKKIRNAQKQKVPFMVIAGDEDMAGGSVSFRYRDGSQENG 638

Query: 429 MSLEEVINYASHRFSNNRPV 448
           +  +E I   +        V
Sbjct: 639 IPFDEAIAKIAKVVEERAQV 658


>gi|167721308|ref|ZP_02404544.1| prolyl-tRNA synthetase [Burkholderia pseudomallei DM98]
          Length = 568

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 127/225 (56%), Positives = 163/225 (72%), Gaps = 1/225 (0%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE NR GAIE+ 
Sbjct: 1   MKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREEMNRAGAIELL 60

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P +Q A+LW ESGR++ YG E+LR+ DR     + GPTHEEV+TDI R+ IKSYR +P 
Sbjct: 61  MPAVQPAELWQESGRWEQYGPELLRIKDRKQNEFVIGPTHEEVVTDIARNQIKSYRQMPV 120

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +Y+RIF R+GL
Sbjct: 121 NFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDAYVRIFTRIGL 180

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +  P+ A++G IGG  SHEF V+ADTGE  +       DF    E
Sbjct: 181 EFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPT-SDFAANVE 224



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 101/179 (56%), Gaps = 3/179 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 372 PEPVVADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 431

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D KGI+WP+++APF++ L  +        R+A +K+YA 
Sbjct: 432 VMGCYGIGITRILGAAIEQNFDDKGIVWPEAIAPFEVVLCPMGYDRSDAVREAADKLYAN 491

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       + 
Sbjct: 492 LAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYQGRRDAEATLLP 550


>gi|227510530|ref|ZP_03940579.1| threonine--tRNA ligase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190182|gb|EEI70249.1| threonine--tRNA ligase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 658

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 162/451 (35%), Gaps = 39/451 (8%)

Query: 2   RRSKY---FLPILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAII 57
           ++S+         + + RD  +  ++L L    +  +   G+  W+P G      +   I
Sbjct: 236 KQSELDEDLKKRQEAHERDHRVIGNQLDLF--FVDPKVGAGLPYWMPNGATIRRTIERYI 293

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTD 116
            +++   G   +  P L + DL+ +SG ++ Y ++M    D  D + +   P +      
Sbjct: 294 VDKEVANGYEHVYTPVLANLDLYKQSGHWEHYREDMFPPMDMGDGEELELRPMNCPSHIQ 353

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+  HI+SYR LP    ++ +  R E      G+ R RE  + D ++F    +  +   N
Sbjct: 354 IYNHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQIQEEFQN 413

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            + +                               +   D   T+ +   D M     S 
Sbjct: 414 ILKLMVEVYHDFDINDYTFR---------------LSYRDPENTEKYFDDDEMWNRAQSM 458

Query: 236 -NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                D++       E   A Y    DV  +    +L   + +S   ++    F    ++
Sbjct: 459 LKGAMDELGLDYVEAEGEAAFYGPKLDVQTKT---ALGNEETLSTIQLD----FMLPERF 511

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
            L     + G DGK H   M     G +  +   +    +     +P  +AP ++ +I +
Sbjct: 512 DLH----YVGEDGKQHRPVMIHR--GLVSTMERFVAYLTEIYKGAFPTWLAPHQVKIIPV 565

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D  ++I  +L ++      D   E++G     A     P  ++VG + V+  
Sbjct: 566 --SQDKHGDYAKQINDQLRRLKIRSSVDTRAEKMGYLIRDAQTHKIPYTLVVGDEEVNGK 623

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++       +  SL+  ++      ++ 
Sbjct: 624 SVSVRRYGEKETQAESLDAFVDEIQKDIASY 654


>gi|145594327|ref|YP_001158624.1| threonyl-tRNA synthetase [Salinispora tropica CNB-440]
 gi|145303664|gb|ABP54246.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Salinispora
           tropica CNB-440]
          Length = 671

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/444 (15%), Positives = 131/444 (29%), Gaps = 35/444 (7%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E  R D       L L +    +   G+  + P G      +   +R     
Sbjct: 250 KAYLRLLEEAARRDHRKLGADLDLFS-FPDEIGSGLPVFHPKGGVLKRTMEDYVRSRHIE 308

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +    L+  SG    Y   M                +  +   I+RS  +
Sbjct: 309 EGFDYVGTPHISKEGLFHTSGHLPYYADGMFPPMQFEGADYYLKAMNCPMHNLIYRSRGR 368

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R R F   D++S+    +        +    L
Sbjct: 369 SYRELPMRLFEFGSVYRYEKSGVIHGLTRVRGFTQDDSHSYCTKEQAPAE-IKHLLAFVL 427

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G+    +   +               DT   +   S +              D 
Sbjct: 428 GLLQDFGITDFFLELSTRD-------------DTKPDKFVGSAEDWATATAVLEQCARDT 474

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y       + +  D++    ++S    +      FG          +
Sbjct: 475 GLELVPDPGGAAFYGPKI---SVQAKDAIGRTWQMSTIQYDFNQPAGFG--------LEY 523

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + ADG       +     G++     V+   + G    W   V    I +          
Sbjct: 524 QAADGTRQQPIMIHCAKFGSIERFIGVLTEHYAGAFPAWLAPVQVVGIPI------RAEH 577

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +   A L   G     D   +++  +   A     P  VI G   V+   +  ++R
Sbjct: 578 TEYLDGFVAALRAAGIRAQVDAGDDRMQKKIRTAQQQKIPFMVIAGDDDVAAGTMSFRYR 637

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
               R  +   E +N+     ++ 
Sbjct: 638 DGSQRNGVPAAEAVNHVLDVVNSR 661


>gi|312384017|gb|EFR28854.1| hypothetical protein AND_02684 [Anopheles darlingi]
          Length = 766

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/433 (17%), Positives = 149/433 (34%), Gaps = 40/433 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   IR E  + G  E+ 
Sbjct: 269 EEAAKRDHRKLGREQELF--FFHELSPGSCFFQPKGAFIYNTLMNFIRAEYRKRGFQEVI 326

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW  SG +  Y + M       +      P +      IF    +S+R LP 
Sbjct: 327 SPNIYNAKLWQTSGHWQHYAENMFSFESEKET-FALKPMNCPGHCLIFDHRNRSWRELPL 385

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F +  +  +            ++   G
Sbjct: 386 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCMPDQIREE-ITGCLDFLRHVYTVFG 444

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P       E                   +    +     D         
Sbjct: 445 FTFNLV-LSTRPEKYLGEIE-----------------VWNEAEKALAESLDKFGEPWKEN 486

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L  + + +   ++    F    +++L        +  K 
Sbjct: 487 PGDGAFYGPKIDI---TIMDALKRHHQCATIQLD----FQLPIRFNLNY---VDDSGEKK 536

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +     WP  ++P ++ ++ +        +  +K+ 
Sbjct: 537 RPVIIHRAVLGSVERMIAILT---ENYAGKWPFWLSPRQVMVVPVGP---AYDEYADKVR 590

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            RL   G  V  D D G+ +  +   A L  F   ++VG K  S   V ++ R   +  +
Sbjct: 591 LRLHDAGFTVEADLDAGDTMNKKIRNAQLAQFNFILVVGEKERSSETVNVRTRDNKVHGE 650

Query: 429 MSLEEVINYASHR 441
           ++++E++   +  
Sbjct: 651 VTVDELVTKLAKL 663


>gi|167895971|ref|ZP_02483373.1| prolyl-tRNA synthetase [Burkholderia pseudomallei 7894]
          Length = 568

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 127/225 (56%), Positives = 162/225 (72%), Gaps = 1/225 (0%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++E P DAEI SHKLM+R GMI + + GIY++LP+G +++  V AI+REE NR GAIE+ 
Sbjct: 1   MKEAPADAEIVSHKLMVRAGMIRRVAGGIYNYLPVGLRSIRKVEAIVREEMNRAGAIELL 60

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P +Q A+LW ESGR++ YG E+LR  DR     + GPTHEEV+TDI R+ IKSYR +P 
Sbjct: 61  MPAVQPAELWQESGRWEQYGPELLRFKDRKQNEFVIGPTHEEVVTDIARNQIKSYRQMPV 120

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            FYQIQ KFRDE+RPRFGVMR REF+MKDAYSFD   E  K SY KM+ +Y+RIF R+GL
Sbjct: 121 NFYQIQTKFRDEIRPRFGVMRGREFIMKDAYSFDKDHESLKESYKKMYDAYVRIFTRIGL 180

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +  P+ A++G IGG  SHEF V+ADTGE  +       DF    E
Sbjct: 181 EFRPVAADNGSIGGSGSHEFHVIADTGEDAIAYCPT-SDFAANVE 224



 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/179 (39%), Positives = 101/179 (56%), Gaps = 3/179 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N K  D  P+ K      RGIEVGH+F  GTKYS  M ATF    GK   +
Sbjct: 372 PEPVVADIRNVKAGDPSPDGKGALDICRGIEVGHVFQLGTKYSDAMGATFIDESGKAQPM 431

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++ A IE + D KGI+WP+++APF++ L  +        R+A +K+YA 
Sbjct: 432 VMGCYGIGITRILGAAIEQNFDDKGIVWPEAIAPFEVVLCPMGYDRSDAVREAADKLYAD 491

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L+  G DV  DD GE+ G  FA  +L+G P ++++G + + D K+E + R       + 
Sbjct: 492 LAAAGIDVILDDRGERPGVMFADWELIGVPHRLVIGERGLKDGKIEYRGRRDAEATLLP 550


>gi|328881181|emb|CCA54420.1| Threonyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 640

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 67/440 (15%), Positives = 140/440 (31%), Gaps = 38/440 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     ++L L + +  +   G+  + P G      +    R+     G   +  
Sbjct: 236 EAEKRDHRKLGNELDLFS-IPDEIGSGLAVFHPKGGIIRRVMEDYSRKRHEEEGYEFVYS 294

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+ +SG  D Y + M               P +  +   IF +  +SYR LP 
Sbjct: 295 PHATKGKLFEKSGHLDWYAEGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 354

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R+R F   DA+ +    + ++   +K     L +    G
Sbjct: 355 RLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTKEQMAEEL-DKTLTFVLNLLRDYG 413

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +                    +   S +  +          +      +  
Sbjct: 414 LTDFYLELST----------------KDPEKFVGSDEIWEEATAVLQQVAEKQGLPLTPD 457

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++    F    ++       +   DG  
Sbjct: 458 PGGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLPERFD----LEYTAPDGTK 506

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +     G++    AV+    +      P  +AP + + I I        D   + 
Sbjct: 507 QRPVMIHRALFGSIERFFAVLL---EHYAGAMPPWLAPVQATGIPIG---DAHVDYLHEF 560

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A+  K G  V  D   +++  +   A     P  +I G + ++   V  ++R       
Sbjct: 561 AAKAKKQGLRVDVDSSSDRMQKKIRNAQKQKVPFMIIAGDEDMAAGAVSFRYRDGSQENG 620

Query: 429 MSLEEVINYASHRFSNNRPV 448
           + ++E I   +    +   V
Sbjct: 621 IPVDEAIAKIAKIVEDRVQV 640


>gi|116617774|ref|YP_818145.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122272025|sp|Q03YF0|SYT_LEUMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116096621|gb|ABJ61772.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 652

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 141/441 (31%), Gaps = 35/441 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
              +   RD  +    L L      +   G+  WLP G      V   I +++   G   
Sbjct: 238 RREEAKERDHRVIGRDLDLF-FTSQEVGSGLPVWLPNGATIRRQVERYITDKELSNGYQH 296

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRN 127
           +  P L + +L+  SG +D Y ++M    D  D       P +      +F    +SYR 
Sbjct: 297 VYTPVLSNLNLYKTSGHWDHYREDMFPPMDMGDGEFLELRPMNCPSHIMVFNHKPRSYRE 356

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP    ++ +  R E       +     +  +     + PE  +  +  +    + ++  
Sbjct: 357 LPMRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVEPEKLEEEFKSILTMMMGVYRD 416

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIISLN 246
             +K    R                  D   T+ +   D   +       T  DD+    
Sbjct: 417 FNIKDYRFRLS--------------YRDPKNTEKYFDDDEMWEKSQKQLKTAMDDLGLDY 462

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV  +    +L   + +S   ++    F    ++       + G D
Sbjct: 463 FEAEGEAAFYGPKLDVQTKT---ALGNEETLSTIQLD----FLLPERFD----LKYIGRD 511

Query: 307 G--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           G      V +    +G M    A +   + G    W   ++P ++ +I +        + 
Sbjct: 512 GLDNHRPVMLHRGIVGTMERFTAYLIEMYKGAFPTW---LSPLQVQIIPVNLG--AHGNY 566

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L   G     +    ++G     A     P  +++G   V+ + V ++     
Sbjct: 567 ANAVQQKLQDAGLRANVETKDAKMGYLIREAQTNKIPYTLVLGDSEVNSNTVTVRKYGDT 626

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS +E         SN 
Sbjct: 627 KTVTMSYDEFQYLILSDVSNY 647


>gi|297195484|ref|ZP_06912882.1| threonyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722098|gb|EDY66006.1| threonyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 657

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/440 (15%), Positives = 133/440 (30%), Gaps = 38/440 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L + +  Q   G+  + P G      +    R+     G   +  
Sbjct: 253 EAEKRDHRKLGSELDLFS-IPEQIGSGLAVFHPKGGIIRRVMEDYSRKRHEEEGYEFVYT 311

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+  SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 312 PHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 371

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R+R F   DA+ +    + +    +      L +    G
Sbjct: 372 RLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTKEQMADEL-DSTLTFVLNLLRDYG 430

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +                    +   S +  +    +     +         
Sbjct: 431 LTDFYLELST----------------KDPEKFVGSDEVWEEATETLRQVAEKQGLPLVPD 474

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++    F    ++       + G DG  
Sbjct: 475 PGGAAFYGPKI---SVQAKDAIGRTWQMSTVQLD----FNLPERFD----LEYTGPDGTK 523

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H    +     G++    AV+    +      P  +AP +   I I        +  +  
Sbjct: 524 HRPVMIHRALFGSIERFFAVLL---EHYAGAMPPWLAPVQAVGIPIG---DAHVEYLQDF 577

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A   K G  V  D   +++  +      L  P  +IVG   ++   V  ++R       
Sbjct: 578 AADAKKKGLRVEVDSSSDRMQKKIRNQQKLKVPFMIIVGDDDMNAGTVSFRYRDGSQENG 637

Query: 429 MSLEEVINYASHRFSNNRPV 448
           +  E+ +   +        V
Sbjct: 638 IPREDALAKIADVVERRVQV 657


>gi|227432351|ref|ZP_03914343.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227351872|gb|EEJ42106.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 652

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 141/441 (31%), Gaps = 35/441 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
              +   RD  +    L L      +   G+  WLP G      V   I +++   G   
Sbjct: 238 RREEAKERDHRVIGRDLDLF-FTSQEVGSGLPVWLPNGATIRRQVERYITDKELSNGYQH 296

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRN 127
           +  P L + +L+  SG +D Y ++M    D  D       P +      +F    +SYR 
Sbjct: 297 VYTPVLSNLNLYKTSGHWDHYREDMFPPMDMGDGEFLELRPMNCPSHIMVFNHKPRSYRE 356

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP    ++ +  R E       +     +  +     + PE  +  +  +    + ++  
Sbjct: 357 LPMRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVEPEKLEEEFKSILTMMMGVYRD 416

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIISLN 246
             +K+   R                  D   T+ +   D   +       T  DD+    
Sbjct: 417 FNIKNYRFRLS--------------YRDPKNTEKYFDDDEMWEKSQKQLKTAMDDLGLDY 462

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV  +    +L   + +S   ++    F    ++       + G D
Sbjct: 463 FEAEGEAAFYGPKLDVQTKT---ALGNEETLSTIQLD----FLLPERFD----LKYIGRD 511

Query: 307 G--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           G      V +    +G M    A +   + G    W   ++P ++ +I +        + 
Sbjct: 512 GLDNHRPVMLHRGIVGTMERFTAYLIEMYKGAFPTW---LSPLQVQIIPVNLG--AHGNY 566

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  +L   G     +    ++G     A     P  +++G   V  + V ++     
Sbjct: 567 ANAVQQKLQDAGLRANVETKDAKMGYLIREAQTNKIPYTLVLGDSEVDSNTVTVRKYGDT 626

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MS +E         SN 
Sbjct: 627 KTVTMSYDEFQYLILSDVSNY 647


>gi|319892279|ref|YP_004149154.1| Prolyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161975|gb|ADV05518.1| Prolyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
          Length = 567

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 109/237 (45%), Positives = 159/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P +AE  SH+L+L+ G+I Q++ G+YS+LP+  + +  ++ IIR+E
Sbjct: 1   MKQSKVFIPTLREVPAEAEAISHQLLLKAGLIKQNAAGVYSYLPVATRVIHKISDIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  A+E+ +P LQ ++LW ESGR+D+YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MERIDAVEVVMPVLQQSELWKESGRWDAYGMELMRLRDRNQREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 ELRSYKQLPLTLFQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHTDEESLMETYQNMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF R+GL   P+ A+SG IGG+ +HEF  L+  GE  +    +  D+    E  
Sbjct: 181 YSTIFKRVGLNVRPVVADSGAIGGNHTHEFHALSAIGEDTIVY-SNNSDYAANIEKA 236



 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/164 (40%), Positives = 97/164 (59%), Gaps = 4/164 (2%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  G KYS  M AT     G++  + MG YGIG  R ++A+IE  HD  GIIW
Sbjct: 405 GIEVGQVFVLGEKYSEAMKATVLNQQGREQNLTMGCYGIGVSRTLSAIIEQHHDDNGIIW 464

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADLLG 399
           P SV PF + LI++       R   +++Y +L  +G  DV +DD  E+ G +F  ADL+G
Sbjct: 465 PKSVTPFDVHLISVNPKKDEQRACADRLYDQL--LGTYDVLYDDRNERAGVKFNDADLIG 522

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P++V+VG K  S+  VE+K R TG  ED+ + +++ +    + 
Sbjct: 523 IPVRVVVG-KNASEGIVEVKRRDTGDSEDVHVNDLVTHLEKLYE 565


>gi|289550945|ref|YP_003471849.1| Bacterial type prolyl-tRNA synthetase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658447|ref|ZP_07911319.1| proline--tRNA ligase [Staphylococcus lugdunensis M23590]
 gi|289180477|gb|ADC87722.1| Bacterial type prolyl-tRNA synthetase [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496776|gb|EFU85099.1| proline--tRNA ligase [Staphylococcus lugdunensis M23590]
          Length = 566

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 120/289 (41%), Positives = 176/289 (60%), Gaps = 5/289 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MRQSKVFIPTMREVPAEAEALSHQLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MERIDAVEILMPVLQQAELWEESGRWSAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKRLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDATYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+G+   P+ A+SG IGG+ +HEF+ L+  GE  +    +  D+    E  +  
Sbjct: 181 YGRIFKRVGINVRPVLADSGAIGGNHTHEFMALSKIGEDTIVY-SNESDYAANIEKAE-- 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
             +      ++ ++      +  N K    L +  ++    I    IF 
Sbjct: 238 --VVYQPQRQEESSADLTKIETPNVKTAQELADFLQLPLNAIVKSMIFK 284



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 102/173 (58%), Gaps = 2/173 (1%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
              K   A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E 
Sbjct: 395 GSGKAQFAEGIEVGQVFKLGTKYSEAMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQ 454

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++D  GIIWP +V PF + LI +    +  +   + +Y +L+ +  DV +DD  E+ G +
Sbjct: 455 NNDDNGIIWPKTVTPFDLHLITVNPKKEEQQSLADNLYEQLNGM-FDVLYDDRKERAGVK 513

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           F  ADL+G P++++VG +  ++  VE+K R TG  ED+ +E++  Y    ++ 
Sbjct: 514 FNDADLIGLPIRIVVGKQ-AAEGIVEVKVRRTGTSEDVHVEQLEQYIKAIYNE 565


>gi|66806197|ref|XP_636821.1| threonyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|74852684|sp|Q54J66|SYTC1_DICDI RecName: Full=Probable threonyl-tRNA synthetase 1, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|60465220|gb|EAL63315.1| threonyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 710

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 148/436 (33%), Gaps = 37/436 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD         L     H +S G   +LP G +  + +   IREE +R G  E+  
Sbjct: 311 EAALRDHRNVGKAQELF--FFHPYSPGSAFFLPHGTRIYNKLVEFIREEYHRRGFTEVIS 368

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P++ S  LW +SG +  Y + M  L    D      P +      +F S  +SYR LP  
Sbjct: 369 PSIFSQKLWEQSGHWQKYSENMFVLPVDKDN-FSLKPMNCPGHCLMFGSRQRSYRELPLR 427

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           F    +  R+EL     G+ R R+F   DA+ F  T                        
Sbjct: 428 FADFGVLHRNELAGALTGLTRVRKFQQDDAHIFCTTEMIEDEI----------------- 470

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                      + G    EF +   T            D    S     +       +  
Sbjct: 471 --NSCLGFMQYVYGIFGFEFGLELSTRPDNFLGEIAQWDIAEASLEKALNKFGKPWKLNP 528

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           +  A Y    D+H   + D L  + + +   ++    F    ++ L   +       K  
Sbjct: 529 KDGAFYGPKIDIH---ITDCLKRSHQCATIQLD----FQLPIRFDLEYQSDDAAELKKRP 581

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            +   +      R++A +IE +     +      A            ++   +  +K+  
Sbjct: 582 VIIHRAILGSVERMMAILIEHTGGKWPLWVSPRQAIVVTV-------NKTHNEYGQKVCK 634

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            +S  G     DD  + I  +   A L  +   ++VG + ++ + V ++ R   +R  ++
Sbjct: 635 EISDAGFYCDIDDSDKTISKKVREAQLAQYNYILVVGQEEINGNTVNVRTRDNVVRGSLT 694

Query: 431 LEEVINYASHRFSNNR 446
           + ++I+         +
Sbjct: 695 VNDLISEFKQLVKEFK 710


>gi|309811510|ref|ZP_07705292.1| proline--tRNA ligase [Dermacoccus sp. Ellin185]
 gi|308434561|gb|EFP58411.1| proline--tRNA ligase [Dermacoccus sp. Ellin185]
          Length = 587

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 106/283 (37%), Positives = 156/283 (55%), Gaps = 1/283 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+  HKL++R G I + + G+Y+WLPLG K L NV  I+REE 
Sbjct: 4   RMSNLFLRTLREDPADAELPGHKLLVRAGYIRRAAPGVYTWLPLGLKVLRNVETIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+S P L   + +  + R+D YG  + RL DR    M+ GPTHEE+ T   +  
Sbjct: 64  EAIGAQELSFPALLPREPYEATNRWDEYGPNLFRLQDRKGVDMLLGPTHEEMFTITVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T +QIQ K+RDE RPR G++R REF+MKD+YSFD T +G + SY K   +Y
Sbjct: 124 FSSYKDLPTTLFQIQTKYRDEARPRAGLLRGREFIMKDSYSFDHTKQGLEESYAKHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           ++IF RLG + + + A+SG +GG  S EF+ ++  GE     S       + +      +
Sbjct: 184 VKIFDRLGFEYVVVHADSGAMGGSASEEFLAVSRHGEDTFVRSPGGFAANVEAVVVPQAE 243

Query: 242 IISLNSIVEQ-WTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
            + ++         P   T +     L  + P +        +
Sbjct: 244 PVEVSVGPAHIEDTPETPTIETLVAALNANHPRDDGREWTAAD 286



 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 90/173 (52%), Gaps = 3/173 (1%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                  ARGIE+GHIF  GTKY+  +       +GK   V MGSYGIG  R VAA+ E 
Sbjct: 415 GSGPLTLARGIEMGHIFQLGTKYAEALGLKVLDENGKLVTVTMGSYGIGVSRAVAAIAED 474

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           + D KG+IWP  +APF + ++     D    +  E++ A L   G  V +DD      G 
Sbjct: 475 NLDDKGLIWPRHIAPFDVHVVATG-KDAAVFEKAEQVVADLESAGLGVLFDDRPKVSPGV 533

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +F  A+L+G P  V++G + +SD  +E+K R +G   D+ ++EV         
Sbjct: 534 KFKDAELIGVPTIVVLG-RGLSDGTIEVKDRRSGTSRDVGVDEVAAEVLSEVR 585


>gi|190406293|gb|EDV09560.1| threonyl-tRNA synthetase [Saccharomyces cerevisiae RM11-1a]
 gi|259147177|emb|CAY80430.1| Ths1p [Saccharomyces cerevisiae EC1118]
 gi|323333154|gb|EGA74554.1| Ths1p [Saccharomyces cerevisiae AWRI796]
 gi|323354584|gb|EGA86420.1| Ths1p [Saccharomyces cerevisiae VL3]
          Length = 734

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 156/440 (35%), Gaps = 40/440 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           + + RD      +  L   + ++ S G   WLP G +  + +  ++R E  + G  E+  
Sbjct: 324 EASMRDHRKIGKEQELF--LFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVIT 381

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + ++ LW  SG + +Y + M       +      P +      +F+S  +SYR LP+ 
Sbjct: 382 PNMYNSKLWETSGHWANYKENMFTFEVEKET-FGLKPMNCPGHCLMFKSRERSYRELPWR 440

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                +  R+E      G+ R R F   DA+ F                +          
Sbjct: 441 VADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCT-----HDQIESEIENIFNFLQ---- 491

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                      I G    EF +   T   +     +  D       +          I  
Sbjct: 492 ----------YIYGVFGFEFKMELSTRPEKYVGKIETWDAAESKLESALKKWGGNWEINA 541

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+    + D+L    + +   ++    F    ++ L   +  + ++  + 
Sbjct: 542 GDGAFYGPKIDIM---ISDALRRWHQCATIQLD----FQLPNRFELEFKSKDQDSESYER 594

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  + A++    +     WP  ++P ++ ++ +    Q      E +  
Sbjct: 595 PVMIHRAILGSVERMTAILT---EHFAGKWPFWLSPRQVLVVPVGVKYQG---YAEDVRN 648

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE--- 427
           +L   G     D  G  +  +     +L +    IVG + +++  V I++R    ++   
Sbjct: 649 KLHDAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDVMEQQGKN 708

Query: 428 -DMSLEEVINYASHRFSNNR 446
             +S+EEV+    +     R
Sbjct: 709 ATVSVEEVLKQLRNLKDEKR 728


>gi|323464624|gb|ADX76777.1| prolyl-tRNA synthetase [Staphylococcus pseudintermedius ED99]
          Length = 567

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 110/237 (46%), Positives = 160/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P +AE  SH+L+L+ G+I Q++ G+YS+LP+  + +  ++ IIR+E
Sbjct: 1   MKQSKVFIPTLREVPAEAEAISHQLLLKAGLIKQNAAGVYSYLPVATRVIHKISDIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  A+E+ +P LQ ++LW ESGR+D+YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MERIDAVEVVMPVLQQSELWKESGRWDAYGMELMRLRDRNQREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 ELRSYKQLPLTLFQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHTDEESLMETYQNMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF R+GL   P+ A+SG IGG+ +HEF  L+  GE  +  S +  D+    E  
Sbjct: 181 YSTIFKRVGLNVRPVVADSGAIGGNHTHEFHALSAIGEDTIVYSDN-SDYAANIEKA 236



 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/164 (40%), Positives = 97/164 (59%), Gaps = 4/164 (2%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  G KYS  M AT     G++  + MG YGIG  R ++A+IE  HD  GIIW
Sbjct: 405 GIEVGQVFVLGEKYSEAMKATVLNQQGREQNLTMGCYGIGVSRTLSAIIEQHHDDNGIIW 464

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADLLG 399
           P SV PF + LI++       R   +++Y +L  +G  DV +DD  E+ G +F  ADL+G
Sbjct: 465 PKSVTPFDVHLISVNPKKDEQRACADRLYDQL--LGTYDVLYDDRNERAGVKFNDADLIG 522

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P++V+VG K  S+  VE+K R TG  ED+ + +++ +    + 
Sbjct: 523 IPVRVVVG-KNASEGIVEVKRRDTGDSEDVHVNDLVTHLEKLYE 565


>gi|256273733|gb|EEU08659.1| Ths1p [Saccharomyces cerevisiae JAY291]
          Length = 734

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 156/440 (35%), Gaps = 40/440 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           + + RD      +  L   + ++ S G   WLP G +  + +  ++R E  + G  E+  
Sbjct: 324 EASMRDHRKIGKEQELF--LFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVIT 381

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + ++ LW  SG + +Y + M       +      P +      +F+S  +SYR LP+ 
Sbjct: 382 PNMYNSKLWETSGHWANYKENMFTFEVEKET-FGLKPMNCPGHCLMFKSRERSYRELPWR 440

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                +  R+E      G+ R R F   DA+ F                +          
Sbjct: 441 VADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCT-----HDQIESEIENIFNFLQ---- 491

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                      I G    EF +   T   +     +  D       +          I  
Sbjct: 492 ----------YIYGVFGFEFKMELSTRPEKYVGKIETWDAAESKLESALKKWGGNWEINA 541

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+    + D+L    + +   ++    F    ++ L   +  + ++  + 
Sbjct: 542 GDGAFYGPKIDIM---ISDALRRWHQCATIQLD----FQLPNRFELEFKSKDQDSESYER 594

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  + A++    +     WP  ++P ++ ++ +    Q      E +  
Sbjct: 595 PVMIHRAILGSVERMTAILT---EHFAGKWPFWLSPRQVLVVPVGVKYQG---YAEDVRN 648

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE--- 427
           +L   G     D  G  +  +     +L +    IVG + +++  V I++R    ++   
Sbjct: 649 KLHDAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDVMEQQGKN 708

Query: 428 -DMSLEEVINYASHRFSNNR 446
             +S+EEV+    +     R
Sbjct: 709 ATVSVEEVLKQLRNLKDEKR 728


>gi|4619|emb|CAA26666.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 734

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 156/440 (35%), Gaps = 40/440 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           + + RD      +  L   + ++ S G   WLP G +  + +  ++R E  + G  E+  
Sbjct: 324 EASMRDHRKIGKEQELF--LFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVIT 381

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + ++ LW  SG + +Y + M       +      P +      +F+S  +SYR LP+ 
Sbjct: 382 PNMYNSKLWETSGHWANYKENMFTFEVEKET-FGLKPMNCPGHCLMFKSRERSYRELPWR 440

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                +  R+E      G+ R R F   DA+ F                +          
Sbjct: 441 VADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCT-----HDQIESEIENIFNFLQ---- 491

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                      I G    EF +   T   +     +  D       +          I  
Sbjct: 492 ----------YIYGVFGFEFEMELSTRPEKYVGKIETWDAAESKLESALKKWGGNWEINA 541

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+    + D+L    + +   ++    F    ++ L   +  + ++  + 
Sbjct: 542 GDGAFYGPKIDIM---ISDALRRWHQCATIQLD----FQLPNRFELEFKSKDQDSESYER 594

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  + A++    +     WP  ++P ++ ++ +    Q      E +  
Sbjct: 595 PVMIHRAILGSVERMTAILT---EHFAGKWPFWLSPRQVLVVPVGVKYQG---YAEDVRN 648

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE--- 427
           +L   G     D  G  +  +     +L +    IVG + +++  V I++R    ++   
Sbjct: 649 KLHDAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDVMEQQGKN 708

Query: 428 -DMSLEEVINYASHRFSNNR 446
             +S+EEV+    +     R
Sbjct: 709 ATVSVEEVLKQLRNLKDEKR 728


>gi|151943085|gb|EDN61420.1| threonyl-tRNA synthetase [Saccharomyces cerevisiae YJM789]
          Length = 734

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 156/440 (35%), Gaps = 40/440 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           + + RD      +  L   + ++ S G   WLP G +  + +  ++R E  + G  E+  
Sbjct: 324 EASMRDHRKIGKEQELF--LFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVIT 381

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + ++ LW  SG + +Y + M       +      P +      +F+S  +SYR LP+ 
Sbjct: 382 PNMYNSKLWETSGHWANYKENMFTFEVEKET-FGLKPMNCPGHCLMFKSRERSYRELPWR 440

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                +  R+E      G+ R R F   DA+ F                +          
Sbjct: 441 VADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCT-----HDQIESEIENIFNFLQ---- 491

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                      I G    EF +   T   +     +  D       +          I  
Sbjct: 492 ----------YIYGVFGFEFKMELSTRPEKYVGKIETWDAAESKLESALKKWGGNWEINA 541

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+    + D+L    + +   ++    F    ++ L   +  + ++  + 
Sbjct: 542 GDGAFYGPKIDIM---ISDALRRWHQCATIQLD----FQLPNRFELEFKSKDQDSESYER 594

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  + A++    +     WP  ++P ++ ++ +    Q      E +  
Sbjct: 595 PVMIHRAILGSVERMTAILT---EHFAGKWPFWLSPRQVLVVPVGVKYQG---YAEDVRN 648

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE--- 427
           +L   G     D  G  +  +     +L +    IVG + +++  V I++R    ++   
Sbjct: 649 KLHDAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDVMEQQGKN 708

Query: 428 -DMSLEEVINYASHRFSNNR 446
             +S+EEV+    +     R
Sbjct: 709 ATVSVEEVLKQLRNLKDEKR 728


>gi|14318437|ref|NP_116578.1| Ths1p [Saccharomyces cerevisiae S288c]
 gi|730881|sp|P04801|SYTC_YEAST RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|556869|emb|CAA86092.1| threonyl-tRNA synthetase [Saccharomyces cerevisiae]
 gi|285812573|tpg|DAA08472.1| TPA: Ths1p [Saccharomyces cerevisiae S288c]
          Length = 734

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 156/440 (35%), Gaps = 40/440 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           + + RD      +  L   + ++ S G   WLP G +  + +  ++R E  + G  E+  
Sbjct: 324 EASMRDHRKIGKEQELF--LFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVIT 381

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + ++ LW  SG + +Y + M       +      P +      +F+S  +SYR LP+ 
Sbjct: 382 PNMYNSKLWETSGHWANYKENMFTFEVEKET-FGLKPMNCPGHCLMFKSRERSYRELPWR 440

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                +  R+E      G+ R R F   DA+ F                +          
Sbjct: 441 VADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCT-----HDQIESEIENIFNFLQ---- 491

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                      I G    EF +   T   +     +  D       +          I  
Sbjct: 492 ----------YIYGVFGFEFKMELSTRPEKYVGKIETWDAAESKLESALKKWGGNWEINA 541

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+    + D+L    + +   ++    F    ++ L   +  + ++  + 
Sbjct: 542 GDGAFYGPKIDIM---ISDALRRWHQCATIQLD----FQLPNRFELEFKSKDQDSESYER 594

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  + A++    +     WP  ++P ++ ++ +    Q      E +  
Sbjct: 595 PVMIHRAILGSVERMTAILT---EHFAGKWPFWLSPRQVLVVPVGVKYQG---YAEDVRN 648

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE--- 427
           +L   G     D  G  +  +     +L +    IVG + +++  V I++R    ++   
Sbjct: 649 KLHDAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDVMEQQGKN 708

Query: 428 -DMSLEEVINYASHRFSNNR 446
             +S+EEV+    +     R
Sbjct: 709 ATVSVEEVLKQLRNLKDEKR 728


>gi|189485254|ref|YP_001956195.1| threonyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287213|dbj|BAG13734.1| threonyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 598

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 147/439 (33%), Gaps = 39/439 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y   I + + RD       L L +  I +    G+  W P G    D +    ++     
Sbjct: 189 YLTGIEEAHKRDHRKLGEDLDLFS--IDETVGGGLVLWHPKGALLKDIIENYWKKFHLEN 246

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +S P + S +L+  SG   +Y + M    +   K     P +  +   I+++ + S
Sbjct: 247 GYDLLSTPHIASEELFKVSGHLQTYSENMYASMEIEGKPYRIKPMNCPMHLMIYKTKLHS 306

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  + ++   +R E      G++R R F   D +      +  +     +F   + 
Sbjct: 307 YRELPVRYAELGTVYRFEKSGVLHGLLRVRGFTQDDGHIIVAPEQLEEEM-LGVFNMAVN 365

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                G     +   + P                E +     ++ +    S         
Sbjct: 366 CLKTFGFNEYKIYFATRP----------------EKKYVGEIEYWEKAQNSIENALKKTG 409

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            +  I E   A Y    D+   K+ D +    + S    +    F    ++       + 
Sbjct: 410 CVYEIDEGGGAFYGPKIDI---KIKDVIGRLWQCSTLQFD----FNLPERFD----IFYV 458

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            + GK      +    +G++     V+   + G   +W           + +   ++  R
Sbjct: 459 NSSGKKARPYMIHRALLGSLERFIGVLLEHYAGALPLW------LSPIQVAVANINEEQR 512

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             CE +   L K    V +D   E+IG +     +   P   ++G+K      V ++ R 
Sbjct: 513 GFCEGLSQELKKNNIRVIFDGRNEKIGRKIRENAMQKIPYIAVIGNKEKDACAVAVRARG 572

Query: 423 TGIREDMSLEEVINYASHR 441
                 MS++  I++    
Sbjct: 573 NRDLGVMSVDNFISFVKEE 591


>gi|18311410|ref|NP_563344.1| prolyl-tRNA synthetase [Clostridium perfringens str. 13]
 gi|168206822|ref|ZP_02632827.1| prolyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|168214717|ref|ZP_02640342.1| prolyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|168217921|ref|ZP_02643546.1| prolyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
 gi|182626988|ref|ZP_02954718.1| prolyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|81849146|sp|Q8XHQ4|SYP_CLOPE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|18146094|dbj|BAB82134.1| proline-tRNA ligase [Clostridium perfringens str. 13]
 gi|170661763|gb|EDT14446.1| prolyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|170713833|gb|EDT26015.1| prolyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|177907658|gb|EDT70282.1| prolyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|182380028|gb|EDT77507.1| prolyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
          Length = 570

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 129/293 (44%), Positives = 169/293 (57%), Gaps = 6/293 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR G++ + + GIY+++PLG K ++NV  I+REE
Sbjct: 1   MKMSNMLVGTLREVPAEAEIESHKLMLRAGLMRKMAAGIYNYMPLGLKVIENVKNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     L  A+LW ESGR+D+YG EM RL DR+++    GPTHEEV TDI R+
Sbjct: 61  MNNAGAQEFLASALIPAELWQESGRWDAYGAEMFRLKDRHNRDFCLGPTHEEVFTDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFGVMRSREF+MKD YSFD   EG   +Y KM  +
Sbjct: 121 EIKSYKQLPLNLYQIQTKYRDERRPRFGVMRSREFIMKDGYSFDKDQEGLDLAYEKMRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+ IF+R GL +  + A+SG IGG  S EF+V ++ GE  V       D+    E     
Sbjct: 181 YVNIFNRCGLDAKAVAADSGAIGGSGSAEFMVKSEVGEDDVVFCTAC-DYAANIEKAP-- 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
              S     E+         +    K  + L +    S + I    IF    K
Sbjct: 238 ---STPEHGEKEELMEVEKVETPAVKSIEDLAKFFECSPKKIAKTLIFQADDK 287



 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 75/191 (39%), Positives = 103/191 (53%), Gaps = 3/191 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 D  N  + +  PE  +    +RG EVGHIF  GTKYS  M ATF   DGK    
Sbjct: 375 FEGIVGDFRNVTIGEKCPECGKEITISRGTEVGHIFKLGTKYSESMGATFIDEDGKAKPF 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R VA++IE  +D  GIIWP  VAP+ +S+I     ++      E+IY  L
Sbjct: 435 IMGCYGIGVTRTVASIIEQHNDENGIIWPLEVAPYHVSVIPANVKNEEQATKAEEIYNEL 494

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K+G +   DD  E+ G +F  ++L+G P+++ VG K + + +VE K R  G  E +S+E
Sbjct: 495 RKMGVEALLDDRKERAGVKFKDSELMGIPMRITVG-KMIGEGQVEFKLRNGGEVETLSIE 553

Query: 433 EVINYASHRFS 443
           EV N     F 
Sbjct: 554 EVYNRVREEFE 564


>gi|2191162|gb|AAB61048.1| Similar to threonyl-tRNA synthetase; coded for by A. thaliana cDNA
           R65376 [Arabidopsis thaliana]
          Length = 702

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 79/455 (17%), Positives = 158/455 (34%), Gaps = 52/455 (11%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E  + D  +   K  L     HQ S G Y +LPLG +  + +   I+ +
Sbjct: 280 KQLKKYLQFLEEAKKYDHRLLGQKQELF--FSHQLSPGSYFFLPLGTRVYNRLMDFIKNQ 337

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + + +LW  SG  D+Y   M    +   +     P +      IF+ 
Sbjct: 338 YWHRGYTEVITPNMYNMELWQTSGHADNYKDNMFTF-NIEKQEFGLKPMNCPGHCLIFQH 396

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            ++SYR LP       +  R+E      G+ R R F   DA+ F  T +        +  
Sbjct: 397 RVRSYRELPMRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTTEQVKGE-VQGVLE 455

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G     ++  + P                  +     +  D          
Sbjct: 456 FIDYVYKVFGFTY-ELKLSTRP-----------------EKYLGDLETWDKAEADLKEAI 497

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +       + E   A Y    D+    + D++    + +   ++    F    +++L  +
Sbjct: 498 EAFGKPLVLNEGDGAFYGPKIDI---TVSDAMNRKFQCATLQLD----FQLPIRFNLEYA 550

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A       K   V +    +G++  + A++    +     WP  ++P +  +  I    Q
Sbjct: 551 AE--DEAKKSRPVMIHRAVLGSVERMFAILL---EHYKGKWPFWISPRQAIVCPISEKSQ 605

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ-------------FAVADLLGFPLQVIV 406
                 EK+  ++   G  V  D    +I  +                A L  +   ++V
Sbjct: 606 ---QYAEKVQKQIKDAGFYVDADLTDRKIDKKVNDFGSCSKFCSVVREAQLAQYNYILVV 662

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G    +  +V ++ R        S+E+++     +
Sbjct: 663 GETEAATGQVSVRVRDNAAHSVKSIEDLLEEFKAK 697


>gi|309389227|gb|ADO77107.1| prolyl-tRNA synthetase [Halanaerobium praevalens DSM 2228]
          Length = 568

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 108/254 (42%), Positives = 163/254 (64%), Gaps = 1/254 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK +LP L+E+P +A++ SH+LMLR GM+ +H+ GIYS+LPLG K +  +  I R+ 
Sbjct: 1   MRMSKLYLPTLKEDPAEADVISHQLMLRAGMMRKHASGIYSYLPLGYKVIKKIEKIARKH 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + + A E+ +P +Q + +W +S R+D +G  M++  DR ++    GPTHEEV+TD+ R 
Sbjct: 61  MDNSEAQEVLLPIMQDSQIWKDSKRWDKFGPLMIKFNDRKNREFCLGPTHEEVVTDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LP   YQIQ K RDE+RPRFGVMR REF+MKDAYS D+   G   SY  M+ +
Sbjct: 121 EVRSYKDLPLNLYQIQTKVRDEIRPRFGVMRGREFIMKDAYSLDIDSAGLDKSYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF   GL+++ + A++G +GG  SHEF+VLAD+GE ++    D  ++    E     
Sbjct: 181 YEKIFAECGLEAVSVEADTGAMGGKDSHEFMVLADSGEDEIAFCNDC-NYAANVERATSQ 239

Query: 241 DIISLNSIVEQWTA 254
            +     I   +  
Sbjct: 240 KVGIDFEIESDFEK 253



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 109/213 (51%), Gaps = 1/213 (0%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            I   N +     ++    +     +A    V + +      + K     GIEVGHIF  
Sbjct: 354 AIVGANEEDYHFKNVKVKRDFEVEAFADLRSVKSGERCPKCEKGKLDIKAGIEVGHIFKL 413

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           GTKYS  M A +   +GK   + MGSYGIG  R+VAA IE ++D  GI WP ++AP++I 
Sbjct: 414 GTKYSENMDANYLDENGKAQPIVMGSYGIGITRLVAAAIEQNNDQYGIKWPKAIAPYQII 473

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ +  +D   +   E IY  L   G +V  DD  E+ G +F  ++L+G PL++ +GS+ 
Sbjct: 474 ILPLG-NDDEVQTKSEAIYQDLKAKGWEVLIDDRKERAGVKFNDSELIGIPLRLTIGSRS 532

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + +  VE   R   ++ ++ LE++       F+
Sbjct: 533 LKNGVVEAMTRENNMKTEIELEQLETKIEALFA 565


>gi|313887818|ref|ZP_07821498.1| proline--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846161|gb|EFR33542.1| proline--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 567

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 116/298 (38%), Positives = 177/298 (59%), Gaps = 6/298 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++P L+E+P+DAEIASHK +LR GMI + + G+Y++LPLG +++  +  I+R+E
Sbjct: 1   MRLSKLYMPTLREDPQDAEIASHKFLLRAGMIRKSASGVYTYLPLGYRSIRKIENIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E+ +  +Q A++W ESGR++ +G EM +L DRND+    GPT EE  T + R 
Sbjct: 61  MDKAGAMEILMSAIQPAEIWKESGRWEKFGPEMFKLRDRNDREFCLGPTAEEYFTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ K+RDE RPRFG+ R+REF MKDAY+FD +PE    +Y  M+ +
Sbjct: 121 EVKSYKDLPLNLYQIQTKYRDEKRPRFGINRAREFSMKDAYTFDTSPETLHTAYMNMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RL L    +  ++G +GG  SHEFI L++TGE  +  S+    F    E    +
Sbjct: 181 YEKIFDRLELDYKIVEGDNGAMGGTGSHEFIALSETGEGVIVYSESG-KFGATEEKAPVE 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS-----ARGIEVGHIFYFGTK 293
            I+      +     +   +    E       + K+ +       G E   +F  G +
Sbjct: 240 YILPQAEDKKDLEKVHTPNASTIEEVANFLKVDQKKCAKAIDLMLGDEPALVFIPGDR 297



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/191 (37%), Positives = 96/191 (50%), Gaps = 3/191 (1%)

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+      D +P    V    RGIEVG+IF  GTKYS  ++AT+   +GK +Y  MG
Sbjct: 378 VVDDLLLVAEGDKVPGTDEVYKFARGIEVGNIFKLGTKYSEALNATYLDENGKANYFYMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R V AVIE +HD  GIIWP SVAP++  +  +   D+      EKIY  L   
Sbjct: 438 SYGVGVTRSVTAVIEQNHDDNGIIWPISVAPYEAIVTIVNTKDEEQVALGEKIYKELEAK 497

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G +F   DL+G PL++  G K      VE   R      ++S +E I
Sbjct: 498 GVEVLLDDRKERPGVKFKDRDLIGIPLRITCGKKSGES-IVEYSTRREMENSEISADEAI 556

Query: 436 NYASHRFSNNR 446
                     R
Sbjct: 557 KNILSEVEKVR 567


>gi|269217138|ref|ZP_06160992.1| proline--tRNA ligase [Slackia exigua ATCC 700122]
 gi|269129275|gb|EEZ60360.1| proline--tRNA ligase [Slackia exigua ATCC 700122]
          Length = 569

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 111/233 (47%), Positives = 164/233 (70%), Gaps = 1/233 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ ++P ++E+P DA++ S KL+ R GM+ + + G+YS+LPLG + L+ + +IIREE +
Sbjct: 1   MSELYMPTIKEDPADADVTSAKLLYRAGMLRKEASGLYSFLPLGMRVLNKLESIIREEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+ +P +QS+DLW ESGR+ +YG+EMLR+ADR+      GPTHEEV+TD+ ++ +
Sbjct: 61  SHGAQEILMPFVQSSDLWRESGRWGAYGEEMLRMADRHGNEFCLGPTHEEVVTDLVKNEL 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SY++LP   YQIQLKFRDE RPRFG++RSREF+MKDAYSFD   EG   SY +M  +Y 
Sbjct: 121 RSYKDLPRNLYQIQLKFRDERRPRFGLLRSREFIMKDAYSFDADREGLDASYERMREAYE 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGD-LSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            +  R+GL+   + A++G IGGD  + EF+VLAD GE ++          + +
Sbjct: 181 NVCDRMGLEYRVVVADAGQIGGDGGTEEFMVLADNGEAELVYCDCGYAADVEA 233



 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 72/188 (38%), Positives = 107/188 (56%), Gaps = 2/188 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A  D+   +  D+ P+      SARGIEVG IF  G KYS  M ATF  ADG +    MG
Sbjct: 382 AWGDLCTVREGDACPQCGSPLRSARGIEVGQIFKLGDKYSRAMGATFMDADGSEKPFIMG 441

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R +AA +E  +D  GIIWP ++AP  +++I +         A E++   L+  
Sbjct: 442 CYGIGVSRAMAAAVEQRNDEHGIIWPAAIAPAHVAVIPLSPKPDEVTAAAEELAGALADA 501

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G +F   DL+G+P+QV+VG + + +  VE+K R TG +E ++L++V+
Sbjct: 502 GLEVVIDDRDERAGVKFNDNDLIGWPVQVVVGKRGLKEGVVEVKDRATGEKESVALDQVL 561

Query: 436 NYASHRFS 443
           +      S
Sbjct: 562 SAVERVLS 569


>gi|290961808|ref|YP_003492990.1| threonine-tRNA synthetase [Streptomyces scabiei 87.22]
 gi|260651334|emb|CBG74456.1| threonine-tRNA synthetase [Streptomyces scabiei 87.22]
          Length = 658

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/440 (15%), Positives = 140/440 (31%), Gaps = 38/440 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     ++L L + +  Q   G+  + P G      +    R      G   +  
Sbjct: 254 EAEKRDHRKLGNELDLFS-IPDQIGSGLAVFHPKGGIIRRVMEDYSRRRHEEEGYEFVYT 312

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+  SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 313 PHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 372

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R+R F   DA+ +    + ++   +K     L +    G
Sbjct: 373 RLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTKEQMAEEL-DKTLTFVLNLLRDYG 431

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +                    +   S +  +    +     +    L    
Sbjct: 432 LTDFYLELST----------------KDPEKFVGSDEIWEESTETLRQVAEKQGLLLVPD 475

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + ++ D++    ++S   ++    F    ++       + G DG  
Sbjct: 476 PGGAAFYGPKI---SVQVKDAIGRTWQMSTVQLD----FNLPERFD----LEYTGPDGSK 524

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +     G++    AV+    +     +P  +AP +   I I        +  +K 
Sbjct: 525 QRPVMIHRALFGSIERFFAVLL---EHYAGAFPAWLAPVQAVGIPIG---DAHVEYLQKF 578

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A   + G  V  D   +++  +   A     P  VI G + ++   V  ++R       
Sbjct: 579 AAEAKRKGLRVDVDASSDRMQKKIRNAQKAKVPFMVIAGDEDMAAGAVSFRYRDGSQENG 638

Query: 429 MSLEEVINYASHRFSNNRPV 448
           + +EE I   +    +   +
Sbjct: 639 IPVEEAIAKIAKVVEDRVQI 658


>gi|297155818|gb|ADI05530.1| threonyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1]
          Length = 659

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 140/447 (31%), Gaps = 37/447 (8%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L +   RD      +L L +    +   G+  + P G      + A  R+    
Sbjct: 247 KAYLDFLVEAEKRDHRKLGSELDLFS-FPDELGSGLAVFHPKGGIIRREMEAYSRKRHEE 305

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +G   ++ P +  A L+  SG    Y + M    +   +       +  +   IFR+  +
Sbjct: 306 SGYEFVNTPHITKAKLFETSGHLPHYMEGMFPPMEFEGQDYYLKAMNCPMHNLIFRARGR 365

Query: 124 SYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R+R F   D++ +    +      + +    L
Sbjct: 366 SYRELPLRLFEFGTVYRYEKSGVVHGLTRTRGFTQDDSHIYCTREQAPDEL-DSLLTFVL 424

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    GL    +   +     D S +FI   +                        +  
Sbjct: 425 DLLRDYGLNDFYLELST----RDDSDKFIGSDEQ-----------WAEATDMLRQAAEKQ 469

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y       + +  D++    ++S   ++      F           +
Sbjct: 470 GLELVMDPGGAAYYGPKI---SVQAKDAIGRTWQMSTIQVDFNQPARF--------ELEY 518

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             ADG       +     G++    AV+    +     +P  +AP +   I I       
Sbjct: 519 TAADGSRQQPIMLHRALFGSIERFFAVLL---EHYAGAFPVWLAPVQAVGIPIGDSH--- 572

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E+  A     G  V  D   +++  +   A     P  +I G   ++   V  ++R
Sbjct: 573 VPYLEEFAAEAKAKGLRVEVDSSSDRMQKKIRNAQRAKIPFMIIAGDDDMAAGAVSFRYR 632

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPV 448
               +  +   E I            V
Sbjct: 633 DGSQKNGIPRYEAIAEILDAVQRRIQV 659


>gi|332295560|ref|YP_004437483.1| Prolyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
 gi|332178663|gb|AEE14352.1| Prolyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
          Length = 572

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 107/241 (44%), Positives = 148/241 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F   L+E P DAE  SH L+LR G I + S GIY++LPL ++ L  +  I+REE
Sbjct: 1   MKLSKLFFKTLKEVPGDAEAISHVLLLRAGYIRRLSSGIYTYLPLAKRVLLKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                + E+ +P LQ  ++W  SGR+  YG E++R  DR+DK    GPTHEEV+TD+   
Sbjct: 61  MININSQELLLPALQPREIWEISGRWKKYGLELMRFKDRHDKDYALGPTHEEVITDLINR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP + +QIQ KFRDE+RPRFG+MR+REF+MKDAYSF    E    +Y  MF +
Sbjct: 121 EVNSYKQLPISVFQIQTKFRDEIRPRFGLMRTREFIMKDAYSFHRNEEDLDKTYWDMFHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG +SHEF+VL   GE ++             + T   
Sbjct: 181 YEKILTRMGLNFKSVEADSGAIGGSVSHEFMVLTPFGEDKILYCSSCSYAANLEKATSTY 240

Query: 241 D 241
           +
Sbjct: 241 E 241



 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 3/208 (1%)

Query: 239 FDDIISLNSIVEQWTAPYAATS-DVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYS 295
            +        V      Y     D+   K  +       + + + G E GH+F  GTKYS
Sbjct: 362 ANKEGYHYKNVYFKRDFYTDKIFDLRISKAGEFCSRCGSRLLESTGSEAGHVFKLGTKYS 421

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            PM A FK  DGK+   +MG YGIG  R++A V+E  HD  GIIWP+S++P+++ +I   
Sbjct: 422 EPMKAYFKDEDGKEKPFEMGCYGIGISRLLAIVVEQHHDEFGIIWPNSISPYQVIIIPTN 481

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
            +D+      E I+  L + G  V +DD  E+ G +F  ADLLG P+++I+GS F     
Sbjct: 482 INDKNQLTTSEMIFYELKERGISVLFDDRDERAGVKFKDADLLGIPIKIIIGSHFSKSGL 541

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           VEIK R  G    +  +E   Y S +  
Sbjct: 542 VEIKVRRDGSSNLVPPDEASVYVSLKLR 569


>gi|300933077|ref|ZP_07148333.1| prolyl-tRNA synthetase [Corynebacterium resistens DSM 45100]
          Length = 592

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 105/282 (37%), Positives = 154/282 (54%), Gaps = 5/282 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ SHKL++R G I + + G+YSWLPLG + L  V  ++R E 
Sbjct: 4   RMSTLFLRTLRDDPADAEVPSHKLLVRAGYIRRAAPGVYSWLPLGLRVLRKVENVVRNEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+S P L   + +  +GR+  YG  +LRL DR     + GPTHEE+ T + +  
Sbjct: 64  DAIGAQELSFPALLPREPYETTGRWTEYGDALLRLKDRKGADYLLGPTHEEMFTSVVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+  EG + SY+K   +Y
Sbjct: 124 YNSYKDFPVTLYQIQNKYRDEERPRAGILRGREFIMKDSYSFDMDDEGLERSYHKHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +IF  LG++     A SG +GG  S EF+ +A+ GE   F      D+    E      
Sbjct: 184 QKIFDTLGVQYAICAATSGAMGGSASEEFLAVAENGE-DTFVRSTGSDYAANVEAV---- 238

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +            P     +  N    D+L +    +   ++
Sbjct: 239 VTQAPDPRPIDGQPALEVRESPNTTTIDALVKWANEAGITVD 280



 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/186 (35%), Positives = 99/186 (53%), Gaps = 5/186 (2%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +    K  D  P+ K     ARGIE+GHIF  G KY+          +GK     MGSY
Sbjct: 407 IEAAEVKEGDPSPDGKGALTLARGIEIGHIFQLGRKYTEAFDVQILDENGKRAVPTMGSY 466

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+VA + E  HD  G+ WP +VAP+ +  + I   D    +A EK+   LS  G 
Sbjct: 467 GIGVSRLVAVLAEQMHDEYGLRWPVAVAPYDVH-VVIANKDAAAAEAAEKLTTELSSTGL 525

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           DV  DD      G +F  ++LLG PL V+VG +  ++ KVE+++RL+G + +++ E+ ++
Sbjct: 526 DVLIDDRPKVSPGVKFKDSELLGMPLVVVVG-RGFAEGKVELRNRLSGDKLEVAYEDAVS 584

Query: 437 YASHRF 442
               + 
Sbjct: 585 AVQQQL 590


>gi|159037395|ref|YP_001536648.1| threonyl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|157916230|gb|ABV97657.1| threonyl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 671

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 69/444 (15%), Positives = 132/444 (29%), Gaps = 35/444 (7%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E  R D       L L +    +   G+  + P G      +   +R     
Sbjct: 250 KAYLRLLEEAARRDHRKLGTDLDLFS-FPEEIGSGLPVFHPKGGVLKRTMEDYVRARHIE 308

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +    L+  SG    Y   M                +  +   I+RS  +
Sbjct: 309 EGFDYVGTPHISKEGLFHTSGHLPYYADGMFPPMHLEGADYYLKAMNCPMHNLIYRSRGR 368

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +RDE      G+ R R F   D++S+    +        +    L
Sbjct: 369 SYRELPMRLFEFGSVYRDEKSGVIHGLTRVRGFTQDDSHSYCTKEQAPAE-IKHLLAFVL 427

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G+    +   +               D    +   S +              D 
Sbjct: 428 GLLQDFGITDFVLELSTRD-------------DANPDKFVGSAEDWATATAVLEQCARDT 474

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y       + +  D++    ++S    +      FG          +
Sbjct: 475 GLDLVPDPGGAAFYGPKI---SVQAKDAIGRTWQMSTIQYDFNQPAGFG--------LEY 523

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + ADG       +     G++     V+   + G    W   V    I +       +  
Sbjct: 524 QAADGSRQRPVMIHCAKFGSIERFIGVLTEHYAGAFPAWLAPVQVVGIPI------REDH 577

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +   A L   G     D   +++  +   A     P   I G   V+   V  ++R
Sbjct: 578 TEYLDGFVAGLRAAGIRAQVDAGDDRMQKKIRTAQQQKIPFMAIAGDDDVAAGTVSFRYR 637

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
               R  + + E +++     ++ 
Sbjct: 638 DGSQRNGVPVAEAVSHVLDVVNSR 661


>gi|222823074|ref|YP_002574647.1| threonyl-tRNA synthetase [Campylobacter lari RM2100]
 gi|254783514|sp|B9KEB1|SYT_CAMLR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|222538295|gb|ACM63396.1| threonyl-tRNA synthetase [Campylobacter lari RM2100]
          Length = 603

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 157/443 (35%), Gaps = 41/443 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L I++E   RD     +++ L      +   G+  WL  G K    +  ++ +     G
Sbjct: 198 YLKIIEEAKKRDHRKLGNEMKLFA-FDDEIGGGLPIWLSNGAKLRSKLEHLLYKAHRLRG 256

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L  AD W  SG Y +Y + M      +++     P +      I++S ++SY
Sbjct: 257 YEPVRGPELLKADAWKISGHYANYKENM-YFTQIDEQEYGIKPMNCVGHIKIYQSDVRSY 315

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++      +
Sbjct: 316 RDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILSFVDTL 374

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G                          T   +     +  D    +     D+   
Sbjct: 375 MKAFGFDYEMEI------------------STRPAKAIGDDEIWDIATNALKQALDEQGL 416

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     ++    F   +++       +  
Sbjct: 417 KYGIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPSRF----KLEYTD 465

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           AD +      +    +G+      ++            +       + + I    Q   +
Sbjct: 466 ADNEKKQPVMLHRAILGSFERFIGILIEHC------AGELPFFIAPTQVAIVPISQNHHE 519

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++I  +L ++G D       E +  +   A+    P+ +++G + V++  V ++ R  
Sbjct: 520 YAKEIAKKLLELGIDSEVYSKNESLNKKIRTAEKAHVPMILVLGDEEVANKSVALRDRRA 579

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
             ++ ++L+E I     + S  R
Sbjct: 580 KEQKTLTLDEFITLTKEKLSEVR 602


>gi|227524682|ref|ZP_03954731.1| threonine--tRNA ligase [Lactobacillus hilgardii ATCC 8290]
 gi|227088166|gb|EEI23478.1| threonine--tRNA ligase [Lactobacillus hilgardii ATCC 8290]
          Length = 658

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 162/451 (35%), Gaps = 39/451 (8%)

Query: 2   RRSKY---FLPILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAII 57
           ++S+         + + RD  +  ++L L    +  +   G+  W+P G      +   I
Sbjct: 236 KQSELDEDLKKRQEAHERDHRVIGNQLDLF--FVDPKVGAGLPYWMPNGATIRRTIERYI 293

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTD 116
            +++   G   +  P L + DL+ +SG ++ Y ++M    D  D + +   P +      
Sbjct: 294 VDKEVANGYEHVYTPVLANLDLYKQSGHWEHYREDMFPPMDMGDGEELELRPMNCPSHIQ 353

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+  HI+SYR LP    ++ +  R E      G+ R RE  + D ++F    +  +   N
Sbjct: 354 IYNHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQIQEEFQN 413

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            + +                               +   D   T+ +   D M     S 
Sbjct: 414 ILKLMVEVYHDFDINDYTFR---------------LSYRDPENTEKYFDDDEMWNRAQSM 458

Query: 236 -NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                D++       E   A Y    DV  +    +L   + +S   ++    F    ++
Sbjct: 459 LKGAMDELGLDYVEAEGEAAFYGPKLDVQTKT---ALGNEETLSTIQLD----FMLPERF 511

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
            L     + G DGK H   M     G +  +   +    +     +P  +AP ++ +I +
Sbjct: 512 DLH----YVGEDGKQHRPVMIHR--GLVSTMERFVAYLTEIYKGAFPTWLAPHQVKIIPV 565

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D  ++I  +L ++      D   E++G     A     P  ++VG + V+  
Sbjct: 566 --SQDKHGDYAKQINDQLRRLKIRSSVDTRAEKMGYLIRDAQTHKIPYTLVVGDEEVNGK 623

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++       +  SL+  ++      ++ 
Sbjct: 624 SVSVRRYGEKETQAESLDTFVDEIQKDIASY 654


>gi|225374732|ref|ZP_03751953.1| hypothetical protein ROSEINA2194_00352 [Roseburia inulinivorans DSM
           16841]
 gi|225213424|gb|EEG95778.1| hypothetical protein ROSEINA2194_00352 [Roseburia inulinivorans DSM
           16841]
          Length = 594

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 153/434 (35%), Gaps = 33/434 (7%)

Query: 16  RDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD      ++ L   M      +G+  +LP G      +   I+ ++ + G + +  P +
Sbjct: 184 RDHRKIGKEMNLF--MSDDLVGRGLPMFLPKGYTVWQELENYIKAKERKLGYLHVMTPCV 241

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            + +L+  SG +D Y   M    +   ++ +  P +      I+ + + SY++LP    +
Sbjct: 242 GTVNLYKTSGHWDHYKDNMFPAMEVEGESFVLRPMNCPHHMMIYANRMHSYKDLPIRIGE 301

Query: 135 IQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           I   FR E      G+ R R F   DA+   +TPE  +  ++++       +    +   
Sbjct: 302 IAHDFRFEASGTLKGIERGRHFCQNDAH-LFVTPEQIESEFSQVVDLIFDTYKDFNITDY 360

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                       + +      D  E          +    +     DD+    +      
Sbjct: 361 RCVLSLRDPADKVKY-----HDDDEM--------WNTAENALRKVLDDLGIDYTEEIGEA 407

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           A Y    DV    +  ++     +S   ++    F    K+    + T+   DG      
Sbjct: 408 AFYGPKLDV---NVKPAIGNEYTLSTCQLD----FCLPEKF----NLTYIDKDGTKKTPV 456

Query: 314 M-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           +     +G++    A I    +      P  +AP +  +I +K  D+       ++ + L
Sbjct: 457 VLHRAILGSLDRFMAYIL---EETKGNLPLWLAPVQARIIPVKNEDEELNAYSHELLSYL 513

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            + G  V  D+  E++G +   A +   P  +I+G   V D  V  +         +  E
Sbjct: 514 DENGIRVEIDERAEKLGYRVRAAQVEKVPYLIILGKNEVKDGTVSYRLHGEQATTTVPKE 573

Query: 433 EVINYASHRFSNNR 446
           E +       +  +
Sbjct: 574 EFLAMLKDEIATKK 587


>gi|205373425|ref|ZP_03226229.1| prolyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 494

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 115/264 (43%), Positives = 165/264 (62%), Gaps = 3/264 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S  F+P L+E P DAEI SH+L+LR G + Q++ GIYS+LPLG++ L  V  IIREE
Sbjct: 1   MKQSMTFIPTLRETPADAEIKSHQLLLRAGFMKQNTSGIYSFLPLGKRVLAKVEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +EM +P LQ A+LW ESGR+ +YG E++R+ DR+ +    G THEEV+T + R 
Sbjct: 61  MENAGVVEMFMPALQQAELWQESGRWYTYGSELMRMKDRHGREFALGATHEEVITSLLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP + YQIQ K+RDE RPRFG++R REF+MKDAYSF  + E    +Y+++F +
Sbjct: 121 DVKSYKKLPLSLYQIQTKYRDEARPRFGLLRGREFIMKDAYSFHASKESLDETYDRIFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN---T 237
           Y  IF R GL    + A+SG +GG  +HEF+VL++ GE  +  S               T
Sbjct: 181 YSNIFERCGLNYRAVIADSGAMGGKDTHEFMVLSEVGEDTIAYSDTSSYAANIEMAPVVT 240

Query: 238 DFDDIISLNSIVEQWTAPYAATSD 261
            ++        +E+   P   T +
Sbjct: 241 QYEMSSEEQLSIEKIATPGQKTIE 264



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA- 279
              +   + + +       ++ +   ++     A      D+      D  P+ K V   
Sbjct: 341 KVIADHAVKYIVNGIAGANEEDVHYKNVNIDRDAKVERYEDLRFILEGDPSPDGKGVIKF 400

Query: 280 -RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +GIEVGH+F  GT+YS  M+AT    +GK  ++ MG YGIG  R +AAV E  +D  G+
Sbjct: 401 AKGIEVGHVFKLGTRYSEAMNATVLDENGKAKHMIMGCYGIGVSRTLAAVAEQYNDENGL 460

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDA 364
           +WP+++AP+++ ++ +   +   +  
Sbjct: 461 LWPENLAPYQVHIVPVNMKNDETKKI 486


>gi|154148459|ref|YP_001406198.1| threonyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
 gi|171769701|sp|A7I107|SYT_CAMHC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|153804468|gb|ABS51475.1| threonyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
          Length = 609

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 163/441 (36%), Gaps = 41/441 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L IL+E   RD  I  +++ L T    Q   G+  WLP G +    +  I+     R G
Sbjct: 204 YLRILEEAKKRDHRIIGNEMKLFT-FDDQIGAGLPVWLPNGARMRSKLEKILFGVHRRRG 262

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  AD W  SG Y +Y + M      +++     P +      +++S I+SY
Sbjct: 263 YEPVRGPEILKADAWKISGHYTNYKENM-YFTKIDEQEYGIKPMNCVGHIKVYQSEIRSY 321

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F++  +  R E      G+ R REF   DA+ F + P   K +  ++     +I
Sbjct: 322 RDLPLKFFEYGVVHRHEKSGVMHGLFRVREFTQDDAHIFCM-PSQIKENVLEILDFVDKI 380

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G                          T   +        +    +     D+   
Sbjct: 381 MKNFGFSYEMEI------------------STKPEKAIGDDKVWEIATNALKEALDENGF 422

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     ++    F   +++       +  
Sbjct: 423 KYGIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPSRFD----LGYID 471

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +      +    +G+      ++     G+   +   +AP  +S+I I        +
Sbjct: 472 ENNERKQPVMLHRAILGSFERFIGILIEHTAGELPFF---IAPTGVSIIPIN---DAHLN 525

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++   L+ +  D       E +  +   A+    P+ +++G   V +  V ++ R  
Sbjct: 526 YAKEVQKALANLEVDSEILSKNETLNKRIRTAEKGRVPMILVLGDNEVKNRSVALRDRRA 585

Query: 424 GIREDMSLEEVINYASHRFSN 444
             + ++SL+E + +  ++ + 
Sbjct: 586 RAQSNLSLDEFLEFVKNKLNE 606


>gi|308509394|ref|XP_003116880.1| CRE-TARS-1 protein [Caenorhabditis remanei]
 gi|308241794|gb|EFO85746.1| CRE-TARS-1 protein [Caenorhabditis remanei]
          Length = 749

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 148/433 (34%), Gaps = 43/433 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H  S G   W P G    + +   IR++  R G  E+ 
Sbjct: 339 EEAAKRDHRKLGKEQDLF--FFHPLSPGSAFWYPKGAHIYNKLVDFIRKQYRRRGFTEVI 396

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +  LW  SG +  Y ++M +  +   +     P +      +F     +Y  LPF
Sbjct: 397 TPNMYNKKLWETSGHWQHYSEDMFK-IEVEKEEFGLKPMNCPGHCLMFGHMPHTYNELPF 455

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F    +  R+E+     G+ R R F   DA+ F    + ++    +        + ++ 
Sbjct: 456 RFADFGVLHRNEMSGALTGLTRVRRFQQDDAHIFCRKDQIAEE-IKQCLDFLEYAYEKVF 514

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P G     E    A+   T+                   +      ++ 
Sbjct: 515 GFTFKLNLSTRPEGFLGEIETWNQAEADLTEAL-----------------NATGRKWALN 557

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L  N + +   ++    F    ++      ++    G+ 
Sbjct: 558 PGDGAFYGPKIDI---TIQDALKRNFQCATIQLD----FQLPNQFD----LSYFDEKGEK 606

Query: 310 HYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               M    +     R+ A + ES                           +  RD    
Sbjct: 607 QRPVMIHRAVLGSVERMTAILTESYGGKWPFWLSPRQCKIITV-------HESVRDYASD 659

Query: 368 IYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +  ++ + G +V +D   G+ +  Q   + L  F   +++G+K   +  V ++ R   +R
Sbjct: 660 VKKKIFEAGFEVEYDATCGDTMNKQVRNSQLAQFNFILVIGAKEKENGTVNVRTRDNAVR 719

Query: 427 EDMSLEEVINYAS 439
            ++ LE++++   
Sbjct: 720 GEVPLEKLLSKFR 732


>gi|91070150|gb|ABE11072.1| threonyl-tRNA synthetase [uncultured Prochlorococcus marinus clone
           HF10-11A3]
          Length = 638

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 135/442 (30%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      K  L    I + S G+  W P G      +   IR    +  
Sbjct: 231 YLTRIEEAEKRDHRKLGKKHSLF--HIQEESPGMIFWHPNGWTIYQVLEKYIRGILKKND 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P      LW +SG ++ +  +M       ++     P +      +F   +KSY
Sbjct: 289 YLEIKTPQAVDKSLWEKSGHWEKFRDDMFT-TASENRTYAIKPMNCPCHIQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +     R+E      G+MR R F   DA+ F  T E  +   +        +
Sbjct: 348 KDLPIRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIFC-TEEQIQEEVSTFIDLVFEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P     S E                   D    + +   D+   
Sbjct: 407 YKTFGFDEIIIKLSTRPQKRVGSEE-----------------IWDKSEEALSKALDNKNL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++                AT+  
Sbjct: 450 KWELQPGEGAFYGPKIEF---SLKDCLNRVWQCGTIQVDFSMPIRLD--------ATYVD 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            + +      +    +G+      ++   ++ K  IW           I + +      D
Sbjct: 499 INNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIW------IAPYQIILLSITDRNID 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C K    L+  G     D   E+IG +   A L   PL  ++G K      + ++    
Sbjct: 553 KCLKFNELLNNNGYRSKVDIRNEKIGYKIREATLKRVPLIAVIGDKEEEIDSIALRALNG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                 +L  +           
Sbjct: 613 RNLGIFNLPNLYKLMDELIDKK 634


>gi|332295956|ref|YP_004437879.1| threonyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
 gi|332179059|gb|AEE14748.1| threonyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
          Length = 606

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 141/433 (32%), Gaps = 41/433 (9%)

Query: 11  LQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           L+E   RD      +L L + M  +   G+  W P G      +   +R+E  + G   +
Sbjct: 202 LEEVYKRDHRKLGKELDLYS-MADEVGAGLILWHPNGGVIRTIIEDYLRKEHVKRGYEIV 260

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + +  +W  SG +D Y + M  + + + +     P +      I+ S  +SYR+LP
Sbjct: 261 YTPHMMNLKIWKISGHFDFYKENM-YIFENDGQEYAVKPMNCPGHMMIYNSKTRSYRDLP 319

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F+++   +R E      G++R R F   DA+ F    +             L     +
Sbjct: 320 IRFFELGTVYRFERSGALHGLLRVRGFTQDDAHIFCTNEQLQDEII-----GVLNFAKDM 374

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                     S     D S                + +  +    S  +          I
Sbjct: 375 MELFGFKYVVSVGTRPDGS--------------IGTDEQWNLATNSLISALKQKNIEFEI 420

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           ++   A Y     V   +L D+L          ++               +  +   DG 
Sbjct: 421 IDGDGAFYGPKIQV---ELIDALGRKWTGPTIQVDFALP--------ERFNLEYADKDGT 469

Query: 309 DHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                M    +     R + A+IE+                          D    +   
Sbjct: 470 KKRPVMIHRTVVGSMERFLGALIENYAGVFPAWLSPIQIIIIPV-----KEDSELLEYSS 524

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++  +LSK    V  D   E +  +   A+L   P  +++G K + +  + ++ R     
Sbjct: 525 EVEKKLSKEDYRVKVDKRNETLKYRIRDAELNRIPYILVIGKKELDEKLISLRTRGMKDE 584

Query: 427 EDMSLEEVINYAS 439
             MS+EE +   S
Sbjct: 585 GQMSIEEFLKRLS 597


>gi|224534482|ref|ZP_03675058.1| threonine--tRNA ligase [Borrelia spielmanii A14S]
 gi|224514159|gb|EEF84477.1| threonine--tRNA ligase [Borrelia spielmanii A14S]
          Length = 581

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 150/443 (33%), Gaps = 37/443 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L + +E   RD      +L L +    +   G+  + P G K    +    REE ++
Sbjct: 172 RSYLNLREEIKKRDHRKLGKELDLFSIH-EEIGPGLVFFHPNGAKIRALIEDFWREEHSK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y   M    + +       P +      I+ +   
Sbjct: 231 NGYDILFSPHIGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYNTGKH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G+MR+R F   DA+      +       ++    +
Sbjct: 291 SYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHIICTHSQVVDE-IKEVLRFAI 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G  S+     + P                  +   +    +  +          
Sbjct: 350 YMWSKFGFNSLKAYLSTKP-----------------EKFVGNDSDWEMSLKVLEEALSGF 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I +   A Y    D+   K+ DSL    ++S    +    F    ++++  +A  
Sbjct: 393 KVPYEIDKGGGAFYGPKIDL---KIVDSLEREWQMSTVQFD----FNLPERFNMTYTAE- 444

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +     +    +G++     ++   + G   +W             I   +    
Sbjct: 445 --DGKEKRPFMIHRALLGSIERFFGILIEHYGGAFPLW------LSPIQAVIIPVNNAVE 496

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+  +    G  +  D+   ++ ++         P   I+G +  ++ K+ I+ R 
Sbjct: 497 DYAIKVLNKFKNEGIRIKLDNTSSRMNAKIREYQAKKIPYMFIIGEREATEEKISIRTRT 556

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 + L+E   +   +  + 
Sbjct: 557 NEQINGIKLDEAFEFILLKIRDK 579


>gi|67475342|ref|XP_653365.1| threonyl-tRNA synthetase [Entamoeba histolytica HM-1:IMSS]
 gi|56470308|gb|EAL47979.1| threonyl-tRNA synthetase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 676

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 144/445 (32%), Gaps = 36/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y     + + RD  +   +  L     H  S G   WLP G +  + +  ++R E  
Sbjct: 267 LKEYIKRAEEADKRDHRLIGRQQDLF--FFHVLSPGSCFWLPHGTRIYNKLVELMRSEYR 324

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P +  + LW  SG +  Y  +M    +   +     P +      +F S  
Sbjct: 325 VLGYQEVITPNIFLSTLWETSGHWQHYKDDMFSF-ECEKQTFALKPMNCPGHCVMFASKK 383

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP  + +  +  R+EL     G+ R R F+  D++ F    +             
Sbjct: 384 RSYRELPLRYAEFGVLHRNELTGALHGLTRVRRFVQDDSHIFCTMDQIESEVT-----GV 438

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L +  ++                      I L+   E +     +  +          +D
Sbjct: 439 LNLMKKIYKIF-------------GFKTEIALSTRNEKKFMGEIETWNKAEAMLTQVLND 485

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I     A Y    D+  E   D+L    +V+   ++    F    ++ L   + 
Sbjct: 486 SHLPFVINAGDGAFYGPKIDIRIE---DALGRKHQVATVQLD----FQLPLRFKLDYMSE 538

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 K   +   +      R  A + E                     + +    +  
Sbjct: 539 DPNQPLKTPVMVHRAVLGSIERFTAILTEHLAGKWPFWLSPR-------QVMVCTVSEKY 591

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   K+   L+  G     DD   ++  +   A +  +   +++G + +  + V ++ R
Sbjct: 592 NEYGAKVTKELNDAGFYADLDDSDNKLPKKIRNAQVAQYNFILVIGEEELVSNSVNVRTR 651

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
              +   +  +E I +     ++ +
Sbjct: 652 ENKVEGKVEFKEFIKHLKQLEADKQ 676


>gi|325963430|ref|YP_004241336.1| Ser-tRNA hydrolase; threonyl-tRNA synthetase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469517|gb|ADX73202.1| Ser-tRNA hydrolase; threonyl-tRNA synthetase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 669

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 63/450 (14%), Positives = 122/450 (27%), Gaps = 47/450 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L +    +   G+  + P G      +    R+     G   
Sbjct: 252 RIAEAERRDHRKLGSELDLFS-FPDELGSGLPVFHPKGGIIRKEMEDYSRQRHVEAGYEF 310

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTD 116
           +  P +    L+  SG  D Y   M                 +  +     P +  +   
Sbjct: 311 VYTPHITKGHLYEVSGHLDWYRDGMFPAMHVDAELNEDGTVRKPGQDYYLKPMNCPMHNL 370

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP   ++    +R E      G+ R R     DA+ +    +       
Sbjct: 371 IFRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYCTREQMKDELTK 430

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                 L +    GL    +   +                    +        +    + 
Sbjct: 431 -TLNFVLGLLKDYGLNDFYLELST----------------KDPEKYVGEDAAWEEATRTL 473

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                +            A Y       + +  D+L    ++S   ++    F    ++ 
Sbjct: 474 AEVAQESGLELVPDPGGAAFYGPKI---SVQAKDALGRTWQMSTIQLD----FNLPERFE 526

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
           L   A       +   V +     G++     V+   + G    W   V    I +    
Sbjct: 527 LEFQAA---DGTRQRPVMIHRALFGSIERFMGVLTEHYAGAFPAWLAPVQVVGIPVA--- 580

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   +    +  +L   G     D   ++   +   A     P  +I G        
Sbjct: 581 ---ETFNEYMFDVVDQLKAAGIRAEVDTSSDRFPKKIRTASKDKIPFVLIAGGDDAEAGA 637

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  + R       + + E +   +    N 
Sbjct: 638 VSFRFRDGSQDNGVPVAEAVKRITEAVRNR 667


>gi|315282166|ref|ZP_07870634.1| prolyl-tRNA synthetase [Listeria marthii FSL S4-120]
 gi|313614198|gb|EFR87874.1| prolyl-tRNA synthetase [Listeria marthii FSL S4-120]
          Length = 308

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 124/294 (42%), Positives = 167/294 (56%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR++  F+P L+E P DAE+ SH+L+LR G I Q + GIYS+LPL    L  +  IIREE
Sbjct: 1   MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLPLATLMLRKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GPTHEEV+T + R 
Sbjct: 61  LEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGPTHEEVITALLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E     YN M  +
Sbjct: 121 EVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSESLDEVYNLMHQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y  IF R GL+   + A+SG IGG+ S EF+ L+D GE  +  S    D+   +E     
Sbjct: 181 YSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGEDTIAYSD-ASDYAANTEMAPVL 239

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                   L   +E+   P   +     E L   + +  +     ++   I   
Sbjct: 240 YMEKKSHELEKDLEKVATPDQKSIGDIVEFLEVPIEKTMKSMLYQVDEEVIMVL 293


>gi|162447220|ref|YP_001620352.1| threonyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
 gi|189083597|sp|A9NF46|SYT_ACHLI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161985327|gb|ABX80976.1| threonyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
          Length = 642

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 165/442 (37%), Gaps = 34/442 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD       L +      +   G+  WLP G      +   I +++   G 
Sbjct: 230 LVMLEERKLRDHRKIGKDLDIFMT-SQEVGSGLPFWLPKGATIRRIIERYITDKELELGY 288

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSY 125
           + +  P + + + + +SG +D Y + M    D  D  M +  P +      I++  I SY
Sbjct: 289 LHVYTPIMANVEFYKQSGHWDHYHENMYPPMDLGDGEMLVLRPMNCPHHMMIYKKDIHSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  F ++ +  R E      G+ R RE  + DA+ F    +  +     + +     
Sbjct: 349 RELPIRFAELGMMHRYEKSGALSGLQRVREMTLNDAHIFVRPDQIKEEFMRVVHLIIEVY 408

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDII 243
                                     +   D    + +   D M     SE     D++ 
Sbjct: 409 KDFKITDYSFR---------------LSYRDPENKEKYFDDDQMWQRAESELKNVMDEMK 453

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y    D+   ++  ++   + +S   ++    F    ++      T+ 
Sbjct: 454 LPYKEAIGEAAFYGPKLDI---QVRTAMGMEETLSTVQLD----FLLPERFD----LTYV 502

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           G DGK+++  +  +  G +  +   +    +     +P  +AP ++ LI +     + +D
Sbjct: 503 GEDGKNNHRPVVIHR-GVVSTMERFVAYLIEEYKGSFPLWLAPVQLKLIPVNL--DLHKD 559

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               ++ +L K+G  V  D   E++G +   A  L  P Q++VG   ++   +  +   +
Sbjct: 560 YVMNLHEQLKKLGFRVESDFRNEKLGYKIREAQTLKIPYQLVVGDNEMNTHSITYRPYGS 619

Query: 424 GIREDMSLEEVINYASHRFSNN 445
             + ++S++  I   + R  N 
Sbjct: 620 EKQINISIDGFIKLLNERMINK 641


>gi|317129168|ref|YP_004095450.1| prolyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315474116|gb|ADU30719.1| prolyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 566

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 127/281 (45%), Positives = 175/281 (62%), Gaps = 1/281 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S +  P L++ P DAE+ SH+LMLR G+I Q + G+YS LPLG KAL  V AI+REE
Sbjct: 1   MKQSTFLAPTLRDVPSDAEVTSHQLMLRAGLIRQSTSGVYSLLPLGLKALKKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA EM +P +Q ++LW ESGR+++YG E++RL DR+ +    GPTHEEV+T + R 
Sbjct: 61  MNRAGAQEMLMPAIQQSELWKESGRWEAYGPELMRLHDRHGREFALGPTHEEVITTVVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP T YQIQ KFRDE RPRFGV+RSREFLMKDAYSFD + EG   SYNKM+ +
Sbjct: 121 DVKTYKKLPMTLYQIQTKFRDERRPRFGVLRSREFLMKDAYSFDTSQEGLDESYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP-IPSENTDF 239
           Y  IF R GL    + A+SG +GG  +HEF+VL++ GE  +  S        I     + 
Sbjct: 181 YTNIFTRCGLDFRAVVADSGAMGGKDTHEFMVLSEIGEDTIAYSDSSSFAANIEIAPVNV 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
           +   +   + E+          +     F  +   K + + 
Sbjct: 241 EYETTNELLKEKELVNTPEKKSIDEVAEFLQVERQKLIKSI 281



 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 68/190 (35%), Positives = 104/190 (54%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+ N +  D  P+ K       GIEVGH+F  GT+YS  M A +   +GK+  + 
Sbjct: 378 VSQFADLRNIQEGDPSPDGKGTIRFKEGIEVGHVFKLGTRYSEAMGAMYLDENGKNKPMI 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R +AA+IE  HD  GIIWP SV PF + ++ I    +  +   E++Y  L+
Sbjct: 438 MGCYGIGVTRTLAAIIEQFHDESGIIWPTSVTPFDVHIVPINMKQEEQKQLAEELYNELT 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +   +V  DD  E+ G +F  ADL GFP++V VG K  ++  VE+K R TG   ++  ++
Sbjct: 498 EERLEVLIDDRPERPGVKFKDADLYGFPVRVTVGKK-ANEGVVELKVRKTGETLEVHKKD 556

Query: 434 VINYASHRFS 443
           ++        
Sbjct: 557 LLRTMKELLK 566


>gi|261405336|ref|YP_003241577.1| prolyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261281799|gb|ACX63770.1| prolyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 575

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 117/232 (50%), Positives = 151/232 (65%), Gaps = 1/232 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  +  +++ P +AE  SH+ MLR G I Q + GIYS+LPLG + L  +  IIR+E
Sbjct: 1   MRQSQLLMTTMRDVPSEAEALSHQWMLRGGYIRQTAAGIYSYLPLGWRVLRKIETIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +Q A+LW ESGRYD YG E++RL DR+D+  + GPTHEEV+T I R 
Sbjct: 61  MDAAGGQELLMPAVQPAELWKESGRYDVYGAELIRLYDRHDREFVLGPTHEEVITSIVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQIQ K+RDE RPRFG++R REFLMKDAYSFD   EG   SY  M+ +
Sbjct: 121 EISSYRKLPVNLYQIQSKYRDERRPRFGLLRGREFLMKDAYSFDRDWEGLDASYRNMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL-SHEFIVLADTGETQVFCSKDFMDFP 231
           Y RIF R GL    + A++G IGG   +HEF+ LAD GE  V    D     
Sbjct: 181 YERIFSRCGLMFRAVEADAGAIGGQGETHEFMALADIGEDTVVSCSDCRYAA 232



 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 67/183 (36%), Positives = 95/183 (51%), Gaps = 4/183 (2%)

Query: 261 DVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D  N    +  P         RGIE+GH+F  GTKYS  M+  +  ADG++  + MG YG
Sbjct: 389 DFRNVTEGEPCPRCGAPLQFHRGIELGHVFKLGTKYSDAMNGKYLDADGREKPLIMGCYG 448

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  RV+AA+ E     + ++WP SVAPF++ +I +   D+      E IY  LS  G +
Sbjct: 449 IGVSRVMAAIAEQRISDERLVWPMSVAPFRVHIIPVAVKDETQMQLAEHIYRELSGAGLE 508

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              DD  E+ G +F  ADL G PL++IVG +  +  +VE      GI+  M  EE I  +
Sbjct: 509 PLLDDRDERAGVKFKDADLAGAPLRIIVG-RGAASGEVEWMG-EDGIKISMPAEEAIQRS 566

Query: 439 SHR 441
              
Sbjct: 567 REE 569


>gi|116630042|ref|YP_815214.1| threonyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|238853770|ref|ZP_04644136.1| threonine--tRNA ligase [Lactobacillus gasseri 202-4]
 gi|282851336|ref|ZP_06260701.1| threonine--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|311110329|ref|ZP_07711726.1| threonine--tRNA ligase [Lactobacillus gasseri MV-22]
 gi|122273021|sp|Q041U6|SYT_LACGA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116095624|gb|ABJ60776.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Lactobacillus
           gasseri ATCC 33323]
 gi|238833579|gb|EEQ25850.1| threonine--tRNA ligase [Lactobacillus gasseri 202-4]
 gi|282557304|gb|EFB62901.1| threonine--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|311065483|gb|EFQ45823.1| threonine--tRNA ligase [Lactobacillus gasseri MV-22]
          Length = 643

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 151/434 (34%), Gaps = 36/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      V   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIVDKEVADGYEHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y  +M    D  D  M    P +      I++ HI+SYR LP    
Sbjct: 296 MNVDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++    +  
Sbjct: 356 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQIREE-FAKVLKLIMDVYKDFDITD 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + + + +  +          DD+       E  
Sbjct: 415 YYFRLS-------------YRDPKNTDKYYANDEMWEKSQSMLKAAMDDLGLDYVEAEGE 461

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G DG++H  
Sbjct: 462 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLTYVGQDGEEHRP 510

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G M    A +   + G    W        +    I  +++      +K+   
Sbjct: 511 VMIHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PVQAEIIPVNEEAHGAYADKVREE 565

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+K G     D   E++G +   +     P  +++G   ++ + V ++   T  +   SL
Sbjct: 566 LAKRGFRAEVDHRNEKLGYKIRESQTQKVPYTLVLGDDEMNANGVNVRRYGTEEQISKSL 625

Query: 432 EEVINYASHRFSNN 445
           ++ I        + 
Sbjct: 626 DDFIAEIDADVKSY 639


>gi|255326388|ref|ZP_05367472.1| proline--tRNA ligase [Rothia mucilaginosa ATCC 25296]
 gi|255296605|gb|EET75938.1| proline--tRNA ligase [Rothia mucilaginosa ATCC 25296]
          Length = 610

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 113/317 (35%), Positives = 162/317 (51%), Gaps = 7/317 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASHKL++R G I + + G+Y+WLPLG K L  V  IIREE 
Sbjct: 4   RLSNLFVRTLREDPVDAEVASHKLLVRAGYIRRAAPGVYTWLPLGLKVLRKVENIIREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  + R+D YG  + RL DR    M+  PTHEE+ T + +  
Sbjct: 64  DAIGAQEVHFPALLPREPYEATNRWDEYGDNLFRLKDRKGADMLLAPTHEEMFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF++  EG   +Y     +Y
Sbjct: 124 YSSYKDLPVYLYQIQTKYRDEARPRAGLLRGREFVMKDSYSFNIDDEGLNEAYMAHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL+ + + A+SG +GG  S EF+     GE     S       + +  T   +
Sbjct: 184 QRIFERLGLEIVIVTAQSGAMGGSRSEEFLHPTPIGEDTFVRSAGGYAANVEAVTTVVPE 243

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I +         P A   D  +    ++L E        +  G +    T        T
Sbjct: 244 EIEIT-----EDTPAALVVDTPDSATIETLVERMNELHSEVTGGTLEASQTL--KCFLGT 296

Query: 302 FKGADGKDHYVQMGSYG 318
                G+     +G  G
Sbjct: 297 VITPSGERKVFAVGVPG 313



 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 5/189 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +    +  D  P+   + V+ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 422 GVIEACEVREGDPAPDGSGELVAARGIEMGHIFALGRKYAEALGLKVLDQNGKLQTVTMG 481

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R +AA+ E +HD KG+IWP ++AP  +  I I   +    +  E++ A L   
Sbjct: 482 SYGVGVTRALAAIAEGNHDEKGLIWPRNLAPADVH-IVITGKEAASHEYAEELSASLESA 540

Query: 376 GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V  DD  +   G +F  A+LLG P  +++G +   D  +E+K R +G   ++S+E  
Sbjct: 541 GLQVMLDDRPKTSPGVKFGDAELLGVPTILVIG-RGFKDGVLELKDRRSGEAREVSVENA 599

Query: 435 INYASHRFS 443
           +        
Sbjct: 600 VAEVIAEVR 608


>gi|326329871|ref|ZP_08196188.1| threonine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
 gi|325952338|gb|EGD44361.1| threonine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
          Length = 659

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/444 (14%), Positives = 133/444 (29%), Gaps = 35/444 (7%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              I +   RD      +L L +    +   G+  + P G      +   +R      G 
Sbjct: 249 LARIEEAERRDHRKLGRELDLYS-FPDELGSGLPVFHPKGGVIKREMEDYVRRRHIEEGF 307

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P +    L+  SG    Y   M    +              +   I+++  +SYR
Sbjct: 308 SYVGTPHISKDGLFHTSGHLPYYADTMFPPMELEGAKYQLKAMSCPMHNLIYKAKGRSYR 367

Query: 127 NLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP   ++    +R E      G+ R R     D++S+    +        +    L + 
Sbjct: 368 ELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHSYVTKEQAPAE-IKHLLDFVLGVL 426

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL    +   +               D    +   S +  +           +    
Sbjct: 427 KDFGLDDFYLELSTR--------------DADNAKFIGSDEQWETATKILEDVATESGLE 472

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                   A Y       + +  D++    ++S    +      FG          ++ A
Sbjct: 473 LVADPGGAAFYGPKI---SVQARDAIGRTWQMSTIQYDFNQPARFG--------LEYQAA 521

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG       + S   G++     V+    +      P  +AP ++  I +        D 
Sbjct: 522 DGTRQEPVMIHSAKFGSIERFLGVLV---EHYAGAMPPWLAPVQVVGIPVA---DAFADY 575

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L   G  V  D+  ++   +   A L   P  +I G + V    V  ++R   
Sbjct: 576 LYEVAGKLKAKGIRVEVDESDDRFQKKIRNAQLQKIPFMLIAGGEDVEKGAVSFRYRDGR 635

Query: 425 IREDMSLEEVINYASHRFSNNRPV 448
               + ++E I        ++  V
Sbjct: 636 QENGIPVDEAIERIVAAVESHEQV 659


>gi|166367159|ref|YP_001659432.1| prolyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|189083503|sp|B0JTD7|SYP_MICAN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166089532|dbj|BAG04240.1| proline-tRNA ligase [Microcystis aeruginosa NIES-843]
          Length = 603

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHK ++R G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQQLFVTLREDPAEAEIPSHKCLVRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N+ GA E  +P LQ A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T +
Sbjct: 61  MNKAGAQECLLPQLQPAELWQESGRWDTYTKAEGIMFALTDRQNRELGLGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF+L  E  K +Y  M
Sbjct: 121 ARDLIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFNLDEECLKKTYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            ++Y  IF R GL    + A+SG IGG  S EF+VLAD GE +V  + D   +    E  
Sbjct: 181 DIAYRNIFRRCGLAFRAVEADSGAIGGSASQEFMVLADAGEDEVLFTAD-EKYAANVEKA 239



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 1/173 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     SARGIEVGHIF  G KYS  M+A +    G+   + MG YGIG  R+  A +E 
Sbjct: 427 PNQTLQSARGIEVGHIFQLGYKYSQAMNAFYTNEAGESTPICMGCYGIGVSRLAQAAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GIIWP ++AP++  ++     D       E +Y  L++ G +   DD  E+ G +
Sbjct: 487 SYDKDGIIWPVAIAPYQAIVVIPNLADAEQVKTAESLYNELNQAGIETLLDDRDERAGVK 546

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           F  ADL+G P +++ G K +   KVE+  R +    ++++ EV++Y     S 
Sbjct: 547 FKDADLIGIPYRIVTG-KSLKSGKVELVERASKKASEVAINEVVSYLKTAISK 598


>gi|159030425|emb|CAO91326.1| proS [Microcystis aeruginosa PCC 7806]
          Length = 603

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 118/240 (49%), Positives = 154/240 (64%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHK ++R G I +   GIY++LPL  + L  V+ I+REE
Sbjct: 1   MRLSQQLFVTLREDPAEAEIPSHKCLVRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N+ GA E  +P LQ A+LW ESGR+D+Y K    M  L DR ++ +  GPTHEEV+T +
Sbjct: 61  MNKAGAQECLLPQLQPAELWQESGRWDTYTKAEGIMFALTDRQNRELGLGPTHEEVITAV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF+L  E  K +Y  M
Sbjct: 121 ARDLIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFNLDEECLKKTYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            ++Y  IF R GL    + A+SG IGG  S EF+VLAD GE +V  + D   +    E  
Sbjct: 181 DIAYRNIFRRCGLAFRAVEADSGAIGGSASQEFMVLADAGEDEVLFTAD-EKYAANVEKA 239



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 1/173 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     SARGIEVGHIF  G KYS  M+A +    G+   + MG YGIG  R+  A +E 
Sbjct: 427 PNQTLQSARGIEVGHIFQLGYKYSQAMNAFYTNEAGESTPICMGCYGIGVSRLAQAAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GIIWP ++AP++  ++     D       E +Y  L++ G +   DD  E+ G +
Sbjct: 487 SYDKDGIIWPVAIAPYQAIVVIPNLADAEQVKTAESLYNELNQAGIETLLDDRNERAGVK 546

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           F  ADL+G P +++ G K +   KVE+  R +    ++++ EV++Y     S 
Sbjct: 547 FKDADLIGIPYRIVTG-KSLKSGKVELVERASKKASEVAINEVVSYLKTAISK 598


>gi|218190922|gb|EEC73349.1| hypothetical protein OsI_07557 [Oryza sativa Indica Group]
          Length = 674

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 152/444 (34%), Gaps = 40/444 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K ++   +E  R D       L L +  I +    G+  W P G      +    ++   
Sbjct: 264 KAYIHFKEEAKRRDHRRLGLDLDLFS--IQEDAGGGLVFWHPKGAIIRHVLEDSWKQIHL 321

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  A+LW  SG  D Y + M    D  D+     P +      +++  +
Sbjct: 322 QRGYDLLYTPHVAKAELWKVSGHIDFYKENMYNQMDVEDELYQLRPMNCPYHILVYKRKL 381

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+ P    ++   +R EL     G+ R R F   DA+ F L  +        +    
Sbjct: 382 HSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDE-IRGVLDLT 440

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +I  + G +   +   + P                      S D  +    +     +D
Sbjct: 441 EQILGQFGFRYYEINLSTRPEKS-----------------VGSDDIWEKATLALKDALED 483

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 + E   A Y    D+   K+ D+L    + S   ++    F    ++ +     
Sbjct: 484 KGWEYKVDEGGGAFYGPKIDL---KIEDALGRKWQCSTVQVD----FNLPERFDITY--- 533

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 K   + +    +G++     V+    +     +P  +AP +  ++ +  ++   
Sbjct: 534 VNSNSEKKRPIMIHRAILGSLERFFGVLI---EHYAGDFPLWLAPIQARILPVTDNE--- 587

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              C ++ + L   G        GE++      A+    PL  +VG K V    + I+ R
Sbjct: 588 LQYCNEVASELKSKGIRAEV-CHGERLPKLIRNAETKKVPLMAVVGPKEVQARTLTIRSR 646

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +G    M ++E         +N 
Sbjct: 647 HSGEIGTMPVDEFFRRMQLAIANK 670


>gi|300361194|ref|ZP_07057371.1| threonine--tRNA ligase [Lactobacillus gasseri JV-V03]
 gi|300353813|gb|EFJ69684.1| threonine--tRNA ligase [Lactobacillus gasseri JV-V03]
          Length = 643

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 151/434 (34%), Gaps = 36/434 (8%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      V   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVVERYIVDKEVADGYEHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y  +M    D  D  M    P +      I++ HI+SYR LP    
Sbjct: 296 MNVDAYKTSGHWAHYRDDMFPPMDMGDGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++ +  R E      G+ R RE  + D ++F    +  +  + K+    + ++    +  
Sbjct: 356 ELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQIREE-FAKVLKLIMDVYKDFDITD 414

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R                       + + + +  +          DD+       E  
Sbjct: 415 YYFRLS-------------YRDPKNTDKYYANDEMWEKSQSMLKAAMDDLGLDYVEAEGE 461

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  +    +L  ++ +S   ++    F    ++      T+ G DG++H  
Sbjct: 462 AAFYGPKLDIQTKT---ALGNDETMSTIQLD----FMLPERF----GLTYVGQDGEEHRP 510

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G M    A +   + G    W        +    I  +++      +K+   
Sbjct: 511 VMIHRGIVGTMERFIAYLTEIYKGAFPTWLA-----PVQAEIIPVNEEAHGAYADKVREE 565

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L+K G     D   E++G +   +     P  +++G   ++ + V ++   T  +   SL
Sbjct: 566 LAKRGFRAEVDHRNEKLGYKIRESQTQKVPYTLVLGDDEMNANGVNVRRYGTEEQISKSL 625

Query: 432 EEVINYASHRFSNN 445
           ++ I        + 
Sbjct: 626 DDFIAEIDADVKSY 639


>gi|188581528|ref|YP_001924973.1| threonyl-tRNA synthetase [Methylobacterium populi BJ001]
 gi|179345026|gb|ACB80438.1| threonyl-tRNA synthetase [Methylobacterium populi BJ001]
          Length = 675

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 142/443 (32%), Gaps = 40/443 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      ++ L      +   G+  W   G      + A +R    +  
Sbjct: 232 YLHRLEEAERRDHRRLGKEMDLF--HFQEEGPGVVFWHAKGWTIFQELIAYMRRRL-KGD 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG +  Y + M       +     +     P +      IF+ 
Sbjct: 289 YAEVNAPQILDKSLWETSGHWGWYRENMFAAQSAGEEAEDKRWFALKPMNCPGHVQIFKH 348

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + +         
Sbjct: 349 GLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIFCTEDQLAAECLKIN-D 407

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L  +   G   I ++  + P     S      A+   T+V             E    
Sbjct: 408 LILSTYADFGFDQILVKLSTRPEKRVGSDALWDHAEAVMTRVL---------AQIEEQSG 458

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             I +  ++     A Y    +     L D++  + +     ++    F    ++     
Sbjct: 459 GRIKT--AVNPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVD----FNLPERFD---- 505

Query: 300 ATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A++      K   V +     G+M     ++     G   +W   V     ++       
Sbjct: 506 ASYIDADSQKKPPVMIHRAICGSMERFTGILIEHFAGHFPLWLAPVQVVVATIT------ 559

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   L + G  V  D   E+I  +     L   P+ + +G +   +  V +
Sbjct: 560 SDADPYAREVVRVLERAGLRVEADLRNEKINYKVREHSLAKVPVLLALGRREAEERTVSV 619

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +     ++L+  +      
Sbjct: 620 RRLGSQKTTTLTLDAAVAAFIEE 642


>gi|238618767|ref|YP_002913592.1| threonyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
 gi|259516721|sp|C4KKV9|SYT_SULIK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238379836|gb|ACR40924.1| threonyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
          Length = 545

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 152/443 (34%), Gaps = 39/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +    D  +   KL L +    +   G+  + P GQ   + + A +RE  +  G
Sbjct: 128 YLTWLEKAEETDHRLIGEKLDLFSFH-EEAGSGLVLFHPKGQTIRNELIAFMREINDSMG 186

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+    +   D+W  SG Y  Y  +++ + +         P +      I++S  ++Y
Sbjct: 187 YQEVYTSHVFKTDIWKISGHYTLYRDKLI-VFNMEGDEYGVKPMNCPAHILIYKSKPRTY 245

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +    +R E +   +G++R R F+  D + F    +  +     +  +    
Sbjct: 246 RDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLMEEIKMLISKTVEVW 305

Query: 185 FHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                    I     + P     S E                   +    +  +   +  
Sbjct: 306 HKFGFKDDDIKPYLSTRPDESIGSDE-----------------LWEKATNALISALQESG 348

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E+  A Y    D    ++ DSL    ++S   ++    F    ++       + 
Sbjct: 349 LKFGIKEKEGAFYGPKIDF---EIRDSLGRWWQLSTIQVD----FNLPERF----KLEYI 397

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG       +     G++    A++     GK   W   ++  ++ ++ I        
Sbjct: 398 DKDGIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTW---LSSVQVRVLPIT---DEVN 451

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   + K       D  GE +  +   A   G P  +IVG K  S+  V ++ R 
Sbjct: 452 EYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRARG 511

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                ++  E+ +       +  
Sbjct: 512 NIEVRNVKFEKFLELLITEIAQR 534


>gi|254391301|ref|ZP_05006505.1| threonyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|326440214|ref|ZP_08214948.1| threonyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|197704992|gb|EDY50804.1| threonyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 658

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/449 (14%), Positives = 139/449 (30%), Gaps = 38/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L +    +   G+  + P G      +    R+   
Sbjct: 245 LKQYLEFLAEAEKRDHRRLGSELDLFSV-PDEIGSGLAVFHPRGGIVRRVMEDYSRKRHE 303

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSH 121
             G   +  P      L+ +SG  D Y + M               P +  +   IF + 
Sbjct: 304 EEGYEFVYTPHATKGTLFEKSGHLDWYAEGMYPPMQLDGGTDYYLKPMNCPMHNLIFDAR 363

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR LP   ++    +R E      G+ R+R F   DA+ +    + ++   ++    
Sbjct: 364 GRSYRELPLRLFEFGTVYRHEKSGVVHGLTRARGFTQDDAHIYCTREQMAEEL-DRTLTF 422

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L +    GL    +   +                    +   S +  +          +
Sbjct: 423 VLNLLRDYGLTDFYLELST----------------KDPEKYVGSDETWEEATEVLRRVAE 466

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +      A Y       + +  D++    ++S   ++    F    ++    + 
Sbjct: 467 KQGLPLTPDPGGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FNLPERF----NL 515

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   DG       +     G++    AV+    +      P  +AP +   I I     
Sbjct: 516 EYTAPDGSRQRPVMIHRALFGSIERFFAVLL---EHYAGAMPPWLAPVQAVGIPIG---D 569

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  +   A   K G  V  D   +++  +      L  P  +IVG + ++   V  +
Sbjct: 570 AHIEYLQSFAAEAKKRGLRVDVDASSDRMQKKIRNHQKLKVPFMIIVGDEDMNAGTVSFR 629

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPV 448
           +R       +  +  +       ++   V
Sbjct: 630 YRDGSQENGIPRDAALAKLEQVVADRVQV 658


>gi|218245600|ref|YP_002370971.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|257058646|ref|YP_003136534.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8802]
 gi|218166078|gb|ACK64815.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|256588812|gb|ACU99698.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8802]
          Length = 607

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/450 (16%), Positives = 154/450 (34%), Gaps = 39/450 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y     +   RD      +L L          G+  W P G      +   ++ EQ 
Sbjct: 187 LTEYKRRKEEALKRDHRKLGKELGLFI-FSDPVGPGLPLWTPKGTIIRSTLEDFLKREQL 245

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTD 116
           + G + +  P +   DL+  SG + +Y ++M  +   N +           P +      
Sbjct: 246 KRGYLSVVTPHIGRVDLFKISGHWQNYKEDMFPMMAENAEEAAQEIGFALKPMNCPFHIQ 305

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I++S ++SYR LP    +    +R E     G +        D     +TP+     +  
Sbjct: 306 IYKSELRSYRELPIRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPDQLDAEFLN 365

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +F  L LK+   R                  D    +   S +  +    +  
Sbjct: 366 VVDLILAVFKSLQLKNFKARLS--------------FRDPESDKYIGSDEAWEKAQNAIR 411

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                +           A Y    D       D L    ++    ++      F      
Sbjct: 412 RAVQTLEMDYFEAPGEAAFYGPKLDFI---FHDVLEREWQLGTVQVDYNLPQRF------ 462

Query: 297 PMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +   DG       +     G++  +  ++    +     +P  ++P +  L+ + 
Sbjct: 463 --ELEYVAEDGTRQRPVMIHRAPFGSLERLIGILI---EEYAGDFPLWLSPIQARLLPV- 516

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
               +  D  +++ +++ ++G     D  GE++G     A+    P+  ++G+K V  + 
Sbjct: 517 --SDLQLDYAKEVASKMQQLGIRAEADTSGERLGKMVRNAEKQKIPVMGVIGAKEVESNS 574

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + I+ R +G    ++ +EVI   +   +N+
Sbjct: 575 LSIRTRASGELGTIATDEVIKKLAEAITNH 604


>gi|149916340|ref|ZP_01904860.1| threonyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
 gi|149809794|gb|EDM69646.1| threonyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
          Length = 663

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 143/447 (31%), Gaps = 44/447 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +   Y   + +   RD      ++ L    + + + G   W P G      +   +R +Q
Sbjct: 232 KLKDYLTFLEEAEKRDHRKLGREMDLF--HMQEEAPGQIFWHPNGWTIYTTLQDYMRRQQ 289

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-----GPTHEEVMTD 116
            R G +E++ P +    LW  SG +D Y + M  +    D A         P +      
Sbjct: 290 RRGGYVEVNTPQVVDRKLWEASGHWDKYQEHMFIVEVDEDHAREKSINALKPMNCPCHVQ 349

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF   +KSYR+LP    +     R E      G+MR R F   DA+ F    +  +    
Sbjct: 350 IFNRGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDAHIFCR-EDQIEAETK 408

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K       I+  LG     ++    P     S +    +++       +    DF +   
Sbjct: 409 KFIGFLSEIYRDLGFSDFKVKFSDRPEKRAGSDDVWDKSESALKAAT-AAAGADFELNL- 466

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                             A Y    +     L D++  + +     ++    F    +  
Sbjct: 467 ---------------GEGAFYGPKLEF---VLTDAIGRDWQCGTLQVD----FVLPER-- 502

Query: 296 LPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + AT+   DG  H    +    +G+      ++   H GK   W         S++  
Sbjct: 503 --LDATYIAEDGAKHRPVMLHRAVLGSFERFIGILIEEHAGKLPFWMAPRQVVVASIV-- 558

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      + + ARL   G     D   E+I  +     +   P+ +  G K V D 
Sbjct: 559 ----SEANAYVQDVVARLVAAGVRAEADIRNEKINYKVREHSVGKVPVILACGMKEVEDG 614

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
            V ++           L +V       
Sbjct: 615 TVSLRRLGEKQSTVQPLADVTEALKRE 641


>gi|227513539|ref|ZP_03943588.1| threonine--tRNA ligase [Lactobacillus buchneri ATCC 11577]
 gi|227083412|gb|EEI18724.1| threonine--tRNA ligase [Lactobacillus buchneri ATCC 11577]
          Length = 658

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 162/451 (35%), Gaps = 39/451 (8%)

Query: 2   RRSKY---FLPILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAII 57
           ++S+         + + RD  +  ++L L    +  +   G+  W+P G      +   I
Sbjct: 236 KQSELDEDLKKRQEAHERDHRVIGNQLDLF--FVDPKVGAGLPYWMPNGATIRRTIERYI 293

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTD 116
            +++   G   +  P L + DL+ +SG ++ Y ++M    D  D + +   P +      
Sbjct: 294 VDKEVANGYEHVYTPVLANLDLYKQSGHWEHYREDMFPPMDMGDGEELELRPMNCPSHIQ 353

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+  HI+SYR LP    ++ +  R E      G+ R RE  + D ++F    +  +   N
Sbjct: 354 IYNHHIRSYRELPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQIQEEFQN 413

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            + +                               +   D   T+ +   D M     S 
Sbjct: 414 ILKLMVEVYHDFDINDYTFR---------------LSYRDPENTEKYFDDDEMWNRAQSM 458

Query: 236 -NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                D++       E   A Y    DV  +    +L   + +S   ++    F    ++
Sbjct: 459 LKGAMDELGLDYVEAEGEAAFYGPKLDVQTKT---ALGNEETLSTIQLD----FMLPERF 511

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
            L     + G DGK H   M     G +  +   +    +     +P  +AP ++ +I +
Sbjct: 512 DLH----YVGEDGKQHRPVMIHR--GLVSTMERFVAYLTEIYKGAFPTWLAPHQVKIIPV 565

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D  ++I  +L ++      D   E++G     A     P  ++VG + V+  
Sbjct: 566 --SQDKHGDYAKQINDQLRRLKIRSSVDTRAEKMGYLIRDAQTHKIPYTLVVGDEEVNGK 623

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++       +  SL+  ++      ++ 
Sbjct: 624 SVSVRRYGEKETQAESLDTFVDEIQKDIASY 654


>gi|168012416|ref|XP_001758898.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690035|gb|EDQ76404.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 613

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 153/438 (34%), Gaps = 40/438 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +    +E  R D       L L +  I +    G+  W P G      +    ++   
Sbjct: 204 KAYQVQKEEAKRRDHRRLGQDLNLFS--IQEDAGGGLVFWHPKGSMVRHIIEDYWKKMHF 261

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +   DLW  SG Y+ Y + M       ++     P +      +++  +
Sbjct: 262 ANGYELLYTPHIAKLDLWKTSGHYEFYKENMFDQMRIEEELYQIRPMNCPFHIQVYKDSL 321

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP    ++   +R E      G+ R R F   D + F L  +        +    
Sbjct: 322 RSYRELPMRVAELGTVYRYERSGALHGLFRVRGFTQDDGHIFCLPDQIRDE-IRGVLDLT 380

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +  + G     +   + P     SHE                   +    +      D
Sbjct: 381 EIVLKQFGFTKFEINLSTKPEKAVGSHE-----------------IWEKSTTALREALQD 423

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                SI E   A Y    DV   K+ D++    + S   ++    F    ++++     
Sbjct: 424 KGWEYSIDEGGGAFYGPKIDV---KIEDAIGRKWQCSTIQVD----FNLPERFNMVY--- 473

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 +   + +    +G++     ++    +     +P  +AP +  L+ +  H+   
Sbjct: 474 VDTDTSRKQPILIHRAILGSIERFFGILV---ENYAGDFPLWLAPVQARLLPVTDHE--- 527

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D C+ + A+L + G        GE++G     A+    P+  +VG K V  + + ++ R
Sbjct: 528 VDYCKNVVAKLREKGIRAEVVF-GERLGKLIRNAETQKIPVMAVVGPKEVESATLTVRTR 586

Query: 422 LTGIREDMSLEEVINYAS 439
             G    +SL+++ +   
Sbjct: 587 HGGELGTLSLDDLTHKIQ 604


>gi|293189858|ref|ZP_06608572.1| proline--tRNA ligase [Actinomyces odontolyticus F0309]
 gi|292821273|gb|EFF80218.1| proline--tRNA ligase [Actinomyces odontolyticus F0309]
          Length = 602

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 107/276 (38%), Positives = 152/276 (55%), Gaps = 2/276 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +FL  L+E+P DAE+ SHKL++R G I + + GIY+WLPLG + L  +  I+REE +
Sbjct: 5   LSTFFLRTLREDPADAEVNSHKLLVRAGYIRRSAPGIYTWLPLGLRTLRKIEDIVREEMD 64

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L  A+ +  + R++ YG  + +L DR     +  PTHEE+ T + +   
Sbjct: 65  AMGAQEVHFPGLIPAEPYKATNRWEEYGPTLFKLNDRKGGDYLLAPTHEEMFTLLVKDMY 124

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFD+  EG   SY     +Y 
Sbjct: 125 SSYKDLPATLYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDIDDEGLNASYQAERDTYE 184

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF RLGL+ + + A SG +GG  S EF+  +  GE     S         +  T   + 
Sbjct: 185 RIFQRLGLRYVIVSAMSGAMGGSRSEEFLHPSPIGEDTFVASPGGYAANAEAVTTPVPEA 244

Query: 243 ISLNSIVEQWTA--PYAATSDVHNEKLFDSLPENKR 276
              + +        P A T +   + L D  P   R
Sbjct: 245 QDASGVPAPLEVPTPDAPTIESLVDLLNDQYPREDR 280



 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 95/187 (50%), Gaps = 5/187 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+        RGIE+GHIF  G KY+  +  T    +GK   V MG
Sbjct: 410 GTIEAAEVREGDLAPDGSGPLHLERGIEIGHIFQLGRKYAKALGLTVLDENGKTQVVTMG 469

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+AA+ E++ D KG+ WP  +APF + ++     D+   +  + +   L   
Sbjct: 470 SYGIGVTRVMAALAEANCDDKGLSWPAQIAPFDVHVLATGKGDE-VFETAQSLGEELDAA 528

Query: 376 GCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G DV  DD      G +F   +L+G P  ++VG + ++DS+VEI+ R TG    + +EE 
Sbjct: 529 GLDVLVDDRRKVSAGVKFKDYELVGVPFGLVVG-RSLADSEVEIRVRATGETIVLPVEEA 587

Query: 435 INYASHR 441
           +      
Sbjct: 588 VARLREL 594


>gi|207344345|gb|EDZ71519.1| YIL078Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 689

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 156/440 (35%), Gaps = 40/440 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           + + RD      +  L   + ++ S G   WLP G +  + +  ++R E  + G  E+  
Sbjct: 279 EASMRDHRKIGKEQELF--LFNEMSPGSCFWLPHGTRIYNTLVDLLRTEYRKRGYEEVIT 336

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + ++ LW  SG + +Y + M       +      P +      +F+S  +SYR LP+ 
Sbjct: 337 PNMYNSKLWETSGHWANYKENMFTFEVEKET-FGLKPMNCPGHCLMFKSRERSYRELPWR 395

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                +  R+E      G+ R R F   DA+ F                +          
Sbjct: 396 VADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCT-----HDQIESEIENIFNFLQ---- 446

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                      I G    EF +   T   +     +  D       +          I  
Sbjct: 447 ----------YIYGVFGFEFKMELSTRPEKYVGKIETWDAAESKLESALKKWGGNWEINA 496

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+    + D+L    + +   ++    F    ++ L   +  + ++  + 
Sbjct: 497 GDGAFYGPKIDIM---ISDALRRWHQCATIQLD----FQLPNRFELEFKSKDQDSESYER 549

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  + A++    +     WP  ++P ++ ++ +    Q      E +  
Sbjct: 550 PVMIHRAILGSVERMTAILT---EHFAGKWPFWLSPRQVLVVPVGVKYQG---YAEDVRN 603

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE--- 427
           +L   G     D  G  +  +     +L +    IVG + +++  V I++R    ++   
Sbjct: 604 KLHDAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDVMEQQGKN 663

Query: 428 -DMSLEEVINYASHRFSNNR 446
             +S+EEV+    +     R
Sbjct: 664 ATVSVEEVLKQLRNLKDEKR 683


>gi|154509145|ref|ZP_02044787.1| hypothetical protein ACTODO_01666 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798779|gb|EDN81199.1| hypothetical protein ACTODO_01666 [Actinomyces odontolyticus ATCC
           17982]
          Length = 602

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 107/276 (38%), Positives = 152/276 (55%), Gaps = 2/276 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +FL  L+E+P DAE+ SHKL++R G I + + GIY+WLPLG + L  +  I+REE +
Sbjct: 5   LSTFFLRTLREDPADAEVNSHKLLVRAGYIRRSAPGIYTWLPLGLRTLRKIEDIVREEMD 64

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L  A+ +  + R++ YG  + +L DR     +  PTHEE+ T + +   
Sbjct: 65  AMGAQEVHFPGLIPAEPYKATNRWEEYGPTLFKLNDRKGGDYLLAPTHEEMFTLLVKDMY 124

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFD+  EG   SY     +Y 
Sbjct: 125 SSYKDLPATLYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDIDDEGLNASYQAERDTYE 184

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF RLGL+ + + A SG +GG  S EF+  +  GE     S         +  T   + 
Sbjct: 185 RIFQRLGLRYVIVSAMSGAMGGSRSEEFLHPSPIGEDTFVASPGGYAANAEAVTTPVPEA 244

Query: 243 ISLNSIVEQWTA--PYAATSDVHNEKLFDSLPENKR 276
              + +        P A T +   + L D  P   R
Sbjct: 245 QDASGVPAPLEVPTPDAPTIESLVDLLNDQYPREDR 280



 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 93/187 (49%), Gaps = 5/187 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+        RGIE+GHIF  G KY+  +  T    +GK   V MG
Sbjct: 410 GTIEAAEVREGDLAPDGSGPLHLERGIEIGHIFQLGRKYAKALGLTVLDENGKTQVVTMG 469

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+AA+ E++ D KG+ WP  +APF + ++     D+   +  + +   L   
Sbjct: 470 SYGIGVTRVMAALAEANCDDKGLSWPAQIAPFDVHVLATGKGDE-VFETAQSLGEELDAA 528

Query: 376 GCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G DV  DD      G +F   +L+G P  ++VG + ++D  VEI+ R TG    + +EE 
Sbjct: 529 GLDVLVDDRRKVSAGVKFKDYELVGVPFGLVVG-RSLADGDVEIRVRGTGETIVVPVEEA 587

Query: 435 INYASHR 441
           +      
Sbjct: 588 VARLREL 594


>gi|327270906|ref|XP_003220229.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Anolis carolinensis]
          Length = 472

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 147/432 (34%), Positives = 227/432 (52%), Gaps = 41/432 (9%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
            S +LML  G+I   S G Y ++P   +A++ +  +I +E    G  +M++PTL SA LW
Sbjct: 66  KSQRLMLLGGLICPASPGCYHYMPYAVRAMEKLIKVIDQEMQAIGGQKMNMPTLCSAKLW 125

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKF 139
            +SGR++  GKE+LR+ DR+ +    GPTHEE +T  I      SY+ LP   YQ+  KF
Sbjct: 126 RDSGRWELMGKELLRMKDRHGQEYCLGPTHEEAITDLIASQGCLSYKQLPLLLYQVTRKF 185

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE +PRFG++R REF MKD Y+FD + E +  +Y  +  +Y  IF+ LGL+ I ++A +
Sbjct: 186 RDEPKPRFGLLRGREFYMKDMYTFDASKEAALQTYECVSNAYSNIFNNLGLQFIKVQAAT 245

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G IGG +SHEF + A+ GE Q+    +  DF    E  + +++                 
Sbjct: 246 GSIGGTMSHEFQLPAEVGEDQLMMCANC-DFSANVETMNSNEMG---------------- 288

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                      + + K + ++GIEVGH F+ GTKYS   +AT   A  K    +MG YG+
Sbjct: 289 ---------CPVCKGKLIESKGIEVGHTFFLGTKYSSVFNATVHTAQNKPVSAEMGCYGL 339

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEKIYA------- 370
           G  R++AA IE       I WPD +AP+++ LI  K   +++      E++Y        
Sbjct: 340 GVSRILAASIEVLSTEDAIRWPDLIAPYQVCLIPPKKGSNEEKGAILLEELYDFISETVP 399

Query: 371 RLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV-EIKHRLTGIRED 428
           RL     ++  DD     IG +   A+ LG+P  +I G K      + E+ ++ TG    
Sbjct: 400 RLKN---EMVLDDRTRLTIGKRLKDANKLGYPYVIIGGKKVFDKPSLFELHNQNTGEILF 456

Query: 429 MSLEEVINYASH 440
           ++ E +I+  S 
Sbjct: 457 LTKEAIIDLLSK 468


>gi|302816173|ref|XP_002989766.1| hypothetical protein SELMODRAFT_447798 [Selaginella moellendorffii]
 gi|300142543|gb|EFJ09243.1| hypothetical protein SELMODRAFT_447798 [Selaginella moellendorffii]
          Length = 564

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 155/442 (35%), Gaps = 39/442 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y     +   RD  +      L     H+ S G   +LP G    + +   IR E  + G
Sbjct: 158 YMTKYEEAKKRDHRLLGKNQQLF--FFHELSPGSAFFLPKGTIVYNKLLQFIRSEYRKRG 215

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG    Y + M  + +   +     P +      +F+  ++SY
Sbjct: 216 FDEVVTPNIYNMKLWEQSGHAAHYKENMF-VFEIEKQEFGLKPMNCPGHCLLFQHRVRSY 274

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP       +  R+EL     G+ R R F   DA+ F +  +               +
Sbjct: 275 RELPLRIADFGVLHRNELSGALTGLTRVRRFSQDDAHIFCMESQVYDE-VKGCLDFLDYV 333

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++  + P                           D    +     +    
Sbjct: 334 YTIFGFTY-DLKLSTRPENF-----------------LGESSLWDRAEGALADALNAHAK 375

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D+   ++ D+L    + +   ++    F    ++ L  SA    
Sbjct: 376 PWQMNEGDGAFYGPKIDI---QVSDALNRKFQCATIQLD----FQSPIRFKLSYSAE--D 426

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
               +  V +    +G++  + A++   + GK   W        +++       +  +D 
Sbjct: 427 EAKIERPVIIHRAILGSIERMFAILLEDNAGKWPFWLSPRQAIVLTI------SEKFKDY 480

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT- 423
            E++ A+L   G +V  D    ++  +   A +  +   ++VG+      +V ++ R + 
Sbjct: 481 AEEVRAKLHAAGFEVDVDVSDRKVDKKVREAQMAHYNYLLVVGAMEQEKGEVNVRTRGSK 540

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G R  +++E++I       +N 
Sbjct: 541 GQRGCITIEKLIAEFQDLVANY 562


>gi|283458510|ref|YP_003363138.1| prolyl-tRNA synthetase [Rothia mucilaginosa DY-18]
 gi|283134553|dbj|BAI65318.1| prolyl-tRNA synthetase [Rothia mucilaginosa DY-18]
          Length = 624

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 114/317 (35%), Positives = 162/317 (51%), Gaps = 7/317 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASHKL++R G I + + G+Y+WLPLG K L  V  IIREE 
Sbjct: 18  RLSNLFVRTLREDPVDAEVASHKLLVRAGYIRRAAPGVYTWLPLGLKVLRKVENIIREEM 77

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  + R+D YG  + RL DR    M+  PTHEE+ T + +  
Sbjct: 78  DAIGAQEVHFPALLPREPYEATNRWDEYGDNLFRLKDRKGADMLLAPTHEEMFTLLVKDL 137

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF++  EG   +Y     +Y
Sbjct: 138 YSSYKDLPVYLYQIQTKYRDEARPRAGLLRGREFVMKDSYSFNIDDEGLNEAYMAHRAAY 197

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL+ + + A+SG +GG  S EF+     GE     S       + +  T   +
Sbjct: 198 QRIFERLGLEIVIVTAQSGAMGGSRSEEFLHPTPIGEDTFVRSAGGYAANVEAVTTVVPE 257

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I +         P A   D  +    ++L E        +  G I    T        T
Sbjct: 258 EIEIT-----EDTPAAILVDTPDSATIETLVERMNELHTEVTGGAIEASQTL--KCFLGT 310

Query: 302 FKGADGKDHYVQMGSYG 318
                G+     +G  G
Sbjct: 311 VITPSGERKVFAVGVPG 327



 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 62/189 (32%), Positives = 96/189 (50%), Gaps = 5/189 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +    +  D  P+   + V+ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 436 GVIEACEVREGDPAPDGSGELVAARGIEMGHIFALGRKYAEALGLKVLDQNGKLQTVTMG 495

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R +AA+ E +HD KG+IWP ++AP  +  I I   D    +  E++ A L   
Sbjct: 496 SYGVGVTRALAAIAEGNHDEKGLIWPRNLAPADVH-IVITGKDAASHEYAEELSASLESA 554

Query: 376 GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V  DD  +   G +F  A+LLG P  +++G +   D  +E+K R +G   ++S+E  
Sbjct: 555 GLQVMLDDRPKTSPGVKFGDAELLGVPTILVIG-RGFKDGVLELKDRRSGEAREVSVENA 613

Query: 435 INYASHRFS 443
           +        
Sbjct: 614 VAEVIAEVR 622


>gi|78778982|ref|YP_397094.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Prochlorococcus
           marinus str. MIT 9312]
 gi|123755107|sp|Q31BT7|SYT_PROM9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78712481|gb|ABB49658.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Prochlorococcus
           marinus str. MIT 9312]
          Length = 638

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 134/442 (30%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      K  L    I + S G+  W P G      +   IRE   +  
Sbjct: 231 YLTRIEEAEKRDHRKLGKKHSLF--HIQEESPGMIFWHPNGWTIYQVLEKYIREILKKND 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P      LW +SG ++ +  +M       ++     P +      +F   +KSY
Sbjct: 289 YLEIKTPQAVDKSLWEKSGHWEKFRDDMFT-TASENRTYAIKPMNCPCHIQLFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +     R+E      G+MR R F   DA+ F    +  +   +        +
Sbjct: 348 KDLPIRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIFCKEEQIQEE-VSTFIDLVFEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P     S E                   D    +     D+   
Sbjct: 407 YKTFGFDEIIIKLSTRPEKRVGSEE-----------------IWDKSEEALTKALDNKNL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++                AT+  
Sbjct: 450 KWELQPGEGAFYGPKIEF---SLKDCLNRVWQCGTIQVDFSMPIRL--------EATYVD 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +      +    +G+      ++   ++ K  IW        +S+           +
Sbjct: 499 IDNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIWLAPYQIILLSIT------DRNNE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C K    ++  G     D   E+IG +   A +   PL  ++G K      V ++    
Sbjct: 553 KCLKFNELINNNGYRSKVDIRNEKIGYKIREATISRIPLIAVIGDKEEEIDSVALRALDG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                 +L  +           
Sbjct: 613 TNLGIFNLPNLYKLMDELIDKK 634


>gi|291545263|emb|CBL18372.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Ruminococcus sp.
           18P13]
          Length = 646

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 152/447 (34%), Gaps = 36/447 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E   RD      +L L T  +    +G+   LP G + +  +   + +E+ R
Sbjct: 230 EAYLKQLEEAKLRDHNKLGRELELFTT-VDCIGQGLPIMLPKGARVIQLLQRFVEDEEQR 288

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSH 121
            G +    P +  +DL+  SG +D Y + M      +++ +     P        +F + 
Sbjct: 289 RGYLLTKTPLMAKSDLYKISGHWDHYKEGMFVLGDEEKDKEVFALRPMTCPFQYQVFLNR 348

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR+LP    +    FR+E      G++R R+F + + +      +            
Sbjct: 349 PRSYRDLPMRLGETSTLFRNEDSGEMHGLIRVRQFTISEGHLILRPEQLEDEF------- 401

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                 R  L+       +  +  D+++ F         +   + +  D    +     D
Sbjct: 402 ------RGCLELANYMLTTLGLADDVTYRFSQWDPNNTEKYIGTPEQWDEAQGAMKKILD 455

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +    +I     A Y    D+  + +     +   +    I+      FG         
Sbjct: 456 HLGIHYTIGIDEAAFYGPKLDIQIKNVH---GKEDTLITIQIDQMLAQLFG--------M 504

Query: 301 TFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   DG       +    +G      A++   + G   +W        I +        
Sbjct: 505 EYTDVDGTKRRPYIIHRTSLGCYERTLALLIEKYAGAFPLWLAPEQVKLIPIA------D 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++  +L   G  +  DD  E++G +   A L   P  + +G   V    V ++
Sbjct: 559 RHMDYTLELARKLEAAGMRITVDDRAEKVGYKIRQAVLEKVPYMLTIGDNEVESKTVSVR 618

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R  G    M+ + ++       +  +
Sbjct: 619 SRRDGDLGSMTQDALLAKLVEEVATKK 645


>gi|227829326|ref|YP_002831105.1| threonyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|259516733|sp|C3MKT5|SYT_SULIL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|227455773|gb|ACP34460.1| threonyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
          Length = 545

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 154/443 (34%), Gaps = 39/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +    D  +   KL L +    +   G+  + P GQ   + + A +RE  +  G
Sbjct: 128 YLTWLEKAEETDHRLIGEKLDLFSFH-EEAGSGLVLFHPKGQTIRNELIAFMREINDSMG 186

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+    +   D+W  SG Y  Y  +++ + +         P +      I++S  ++Y
Sbjct: 187 YQEVYTSHVFKTDIWKISGHYTLYRDKLI-VFNMEGDEYGVKPMNCPAHILIYKSKPRTY 245

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +    +R E +   +G++R R F+  D + F    +  +     +  +    
Sbjct: 246 RDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVW 305

Query: 185 FHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                    I     + P     S E                   +    +  +   +  
Sbjct: 306 HKFGFKDDDIKPYLSTRPDESIGSDE-----------------LWEKATNALISALQESG 348

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E+  A Y    D    ++ DSL    ++S   ++    F    ++       + 
Sbjct: 349 LKFGIKEKEGAFYGPKIDF---EIRDSLGRWWQLSTIQVD----FNLPERF----KLEYI 397

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +     G++    A++     GK   W   ++  ++ ++ I        
Sbjct: 398 DKDGIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTW---LSSVQVRVLPIT---DEVN 451

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   + K       D  GE +  +   A   G P  +IVG K  S+  V ++ R 
Sbjct: 452 EYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRARG 511

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                ++  E+ +       +  
Sbjct: 512 NIEVRNVKFEKFLELLITEIAQR 534


>gi|332885366|gb|EGK05615.1| threonyl-tRNA synthetase [Dysgonomonas mossii DSM 22836]
          Length = 650

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 151/444 (34%), Gaps = 38/444 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      +L L         KG+  WLP G +    +   +++ Q + 
Sbjct: 230 EYLVMLEEAKKRDHRKIGKELELFA-FSENVGKGLPLWLPRGTQLRLKLEDFLKKIQKKF 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              ++  P + S  L+V SG Y  YG++  +        +  +  P +     +I++   
Sbjct: 289 EYQQVMTPHIGSKLLYVTSGHYAKYGQDSFQPIHTPEEGEEFLLKPMNCPHHCEIYKIVP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP    +    +R E      G+ R R F   DA+ F  TPE  K  + K+    
Sbjct: 349 RSYRDLPLRMAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPEQLKEEFLKVMDIV 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             IF  L  ++   +                  D    + +   D           +  +
Sbjct: 408 FIIFKALNFENFEAQISLR--------------DPNNREKYIGSDANWEKAERAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D+L    ++    ++                 
Sbjct: 454 EKGLPARVELGEAAFYGPKLDFM---VKDALGRRWQLGTIQVDYNLP--------ERFEL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + GAD + H    +     G+M    AV+     GK  +W           + I    +
Sbjct: 503 EYTGADNQKHRPVMIHRAPFGSMERFIAVLIEHTAGKFPLW------LAPDQVVILPISE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++     + G     DD  E+IG +    +L   P  +IVG K     +V I+
Sbjct: 557 KFNDYAHRVSHYFKQQGISSQVDDRNEKIGRKIRDNELKRIPYLLIVGEKEAESEEVSIR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            +  G +  M         +    
Sbjct: 617 KQGDGDKGSMKFVNFAAQLNEEME 640


>gi|229583844|ref|YP_002842345.1| threonyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
 gi|259516679|sp|C3N1B5|SYT_SULIA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|228018893|gb|ACP54300.1| threonyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
 gi|323476419|gb|ADX81657.1| threonyl-tRNA synthetase [Sulfolobus islandicus HVE10/4]
          Length = 545

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 154/443 (34%), Gaps = 39/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +    D  +   KL L +    +   G+  + P GQ   + + A +RE  +  G
Sbjct: 128 YLTWLEKAEETDHRLIGEKLDLFSFH-EEAGSGLVLFHPKGQTIRNELIAFMREINDSMG 186

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+    +   D+W  SG Y  Y  +++ + +         P +      I++S  ++Y
Sbjct: 187 YQEVYTSHVFKTDIWKISGHYTLYRDKLI-VFNMEGDEYGVKPMNCPAHILIYKSKPRTY 245

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +    +R E +   +G++R R F+  D + F    +  +     +  +    
Sbjct: 246 RDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVW 305

Query: 185 FHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                    I     + P     S E                   +    +  +   +  
Sbjct: 306 HKFGFKDDDIKPYLSTRPDESIGSDE-----------------LWEKATNALISALQESG 348

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E+  A Y    D    ++ DSL    ++S   ++    F    ++       + 
Sbjct: 349 LKFGIKEKEGAFYGPKIDF---EIRDSLGRWWQLSTIQVD----FNLPERF----KLEYI 397

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +     G++    A++     GK   W   ++  ++ ++ I        
Sbjct: 398 DKDGIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTW---LSSVQVRVLPIT---DEVN 451

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   + K       D  GE +  +   A   G P  +IVG K  S+  V ++ R 
Sbjct: 452 EYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRARG 511

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                ++  E+ +       +  
Sbjct: 512 NIEVRNVKFEKFLELLITEIAQR 534


>gi|284996685|ref|YP_003418452.1| threonyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
 gi|284444580|gb|ADB86082.1| threonyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
          Length = 545

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 152/443 (34%), Gaps = 39/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +    D  +   KL L +    +   G+  + P GQ   + + A +RE  +  G
Sbjct: 128 YLTWLEKAEETDHRLIGEKLDLFSFH-EEAGSGLVLFHPKGQTIRNELIAFMREINDSMG 186

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+    +   D+W  SG Y  Y  +++ + +         P +      I++S  ++Y
Sbjct: 187 YQEVYTSHVFKTDIWKISGHYTLYRDKLI-VFNMEGDEYGVKPMNCPAHILIYKSKPRTY 245

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +    +R E +   +G++R R F+  D + F    +  +     +  +    
Sbjct: 246 RDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVW 305

Query: 185 FHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                    I     + P     S E                   +    +  +   +  
Sbjct: 306 HKFGFKDDDIKPYLSTRPDESIGSDE-----------------LWEKATNALISALQESG 348

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E+  A Y    D    ++ DSL    ++S   ++    F    ++       + 
Sbjct: 349 LKFGIKEKEGAFYGPKIDF---EIRDSLGRWWQLSTIQVD----FNLPERF----KLEYI 397

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG       +     G++    A+I     GK   W   ++  ++ ++ I        
Sbjct: 398 DKDGIKKRPVMVHRAIYGSIDRFVAIILEHFKGKLPTW---LSSVQVRVLPIT---DEVN 451

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   + K       D  GE +  +   A   G P  +IVG K  S+  V ++ R 
Sbjct: 452 EYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRARG 511

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                ++  E+ +       +  
Sbjct: 512 NIEVRNVKFEKFLELLITEIAQR 534


>gi|224099691|ref|XP_002311580.1| predicted protein [Populus trichocarpa]
 gi|222851400|gb|EEE88947.1| predicted protein [Populus trichocarpa]
          Length = 678

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 75/446 (16%), Positives = 156/446 (34%), Gaps = 38/446 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  +Y   + +    D  +   K  L     H  S G + +LP G +  + +   I++E 
Sbjct: 270 RLQEYKQFLEEAKKYDHRLLGIKQELF--FCHPLSPGSWFFLPHGTRVYNKLMQFIKDEY 327

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            + G  E+  P + +  LW  SG   +Y + M  L +  ++     P +      +F+  
Sbjct: 328 RKRGYEEVKSPNIFNMKLWETSGHAANYKENMF-LLEIENQEFGLKPMNCPGHCLMFQHR 386

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP          R+E      G+ R R F   DA+ F    +        +   
Sbjct: 387 VRSYRELPLRLADFGALHRNEASGALTGLTRVRRFQQDDAHIFCRKSQIKDE-VRGVLEF 445

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
               + + G     ++  + P                  +     +  D    +     D
Sbjct: 446 IDYTYGKFGFTY-ELKLSTRP-----------------EKYLGVLETWDEAEKALTEALD 487

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +      I E   A Y    D+    + D+L    + +   ++    F    ++ L  SA
Sbjct: 488 EFGKPWKIDEGDGAFYGPKIDI---SVSDALKRKFQCATLQLD----FQLPDRFKLEYSA 540

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                   +  V +    +G++  + A++    +     WP  ++P +  +  +    Q 
Sbjct: 541 E--DEARSEAPVMIHRAILGSVERMFAILL---EHYKGKWPFWLSPRQAIVCPVSEKSQS 595

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++  ++ + G  V  D    +I  +   A L  +   ++VG +     +V ++ 
Sbjct: 596 ---YALQVRDQIHEAGYYVDVDATDRKIQKKVREAQLAQYNYILVVGEEESKTGQVSVRV 652

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R       MS+E ++       ++ R
Sbjct: 653 RDNADHSVMSIESLLGLFKELVADFR 678


>gi|124516423|gb|EAY57931.1| Threonyl-tRNA synthetase [Leptospirillum rubarum]
          Length = 617

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 146/438 (33%), Gaps = 42/438 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L   +E  R D      +L L   +  +   G+  WLP G +    +  + +   +R G
Sbjct: 203 YLRQQEEIQRRDHRKLGRELGLFRTLDEK-GAGLVLWLPRGSQIRRTLEELWKILHDRHG 261

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DLW++SG +D Y   M R  +    A    P +      IFR  ++SY
Sbjct: 262 YRYVYTPHIARLDLWMQSGHWDYYQDSMFRPMETEGTAYELKPMNCPFHILIFRESVQSY 321

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++   +R E      G+MR R F   DA+ F    + +      +     ++
Sbjct: 322 RDLPIRLSELGTVYRYERSGTLHGLMRVRGFTQDDAHIFYPPEDLAGE-IRNVLALVDQM 380

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             R G     +   + P     S E                   +    S     ++   
Sbjct: 381 IGRFGFTDRTVYLSTRPEKSVGSDE-----------------NWEMATGSLRRALEESGI 423

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +       Y    D+   K  D++    ++S   ++    F    K+      T++ 
Sbjct: 424 PYEVDPGEGVFYGPKIDI---KFHDAIGRAWQLSTIQVD----FNLPEKFD----LTYRN 472

Query: 305 ADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             G+     M    +     R    +IE       +                        
Sbjct: 473 DSGEPCRPIMIHRALFGSIERFFGILIEHYAGAFPLWLAPEQVRIMTIA-------DRHI 525

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              + +  RL   G     D   E+IG +   A +   P   +VG + V +++V ++ R 
Sbjct: 526 PYAQTVLNRLKDRGVRAEGDFRNEKIGFKVREAQMAKIPEMWVVGDREVEENRVSVRTRE 585

Query: 423 TGIREDMSLE-EVINYAS 439
              ++   LE E+ +   
Sbjct: 586 GEKKDLRPLESELEDLFR 603


>gi|315924324|ref|ZP_07920547.1| threonine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622395|gb|EFV02353.1| threonine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 644

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 144/443 (32%), Gaps = 37/443 (8%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    +   + G+  WLP G K  + +    R+E  + G 
Sbjct: 231 LAKLEEAQKRDHRKLGPQLDLF--FLDDTAPGMPYWLPKGWKLFNTLLEFWRDEHEKRGY 288

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+S P +    LW +SG +D Y   M  +    ++     P +      +++   +SYR
Sbjct: 289 QEISSPQINYNKLWRQSGHWDHYKDNMFVIPVSENEIYGVKPMNCPNAIVVYKRKTRSYR 348

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           +LP       +  R E   +   +   +   +D     +T +      N++       + 
Sbjct: 349 DLPLRLSDCDVLHRKEKSGQLHGLLRVQMFRQDDSHNFITEDQIYDEINEILDIADLFYG 408

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             GL+       + P            A+    ++   +                     
Sbjct: 409 IFGLEY-RPELSTRPADFMGDIALWDKAEAALKEILDKRYGE---------------GGY 452

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
            + E   A Y    D+    + D+L    ++    ++    F     +      T+   D
Sbjct: 453 DVNEGDGAFYGPKIDIM---MKDALDRTWQMGTIQVD----FQLPRNFD----LTYMDKD 501

Query: 307 GK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           G+    V +     G++     ++  S  GK   W           + I    +   +  
Sbjct: 502 GELKVPVMIHRVIYGSLERFIGLLIESTAGKFPFW------LSPVQVGIVPVREFHNEYA 555

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + I  +L      V  DD   Q+G + +       P  +IVG K    + V ++ R    
Sbjct: 556 QSIADQLRDHRIRVEVDDRDAQMGGKISKFRKELLPYILIVGDKEKEANAVSVRIRDGVQ 615

Query: 426 REDMSLEEVINYASHRFSNNRPV 448
             D+ ++  +       +  R +
Sbjct: 616 LHDIPVDAFL-KVVDVMNKKREL 637


>gi|312901397|ref|ZP_07760674.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|311291473|gb|EFQ70029.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0470]
          Length = 626

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 71/405 (17%), Positives = 148/405 (36%), Gaps = 34/405 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           F+ + +E   RD      +L L   M+  +   G+  WLP G      +   I +++   
Sbjct: 252 FIKMREEAKERDHRKLGKELDLF--MVSQEVGSGLPFWLPKGATIRRTIERYIVDKEISL 309

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIK 123
           G   +  P +   +L+  SG +D Y ++M    D  D  M +  P +      ++++ I 
Sbjct: 310 GYQHVYTPIMADVELYKTSGHWDHYHEDMFPPMDMGDGEMLVLRPMNCPHHMMVYKNDIH 369

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP    ++ +  R E       ++    +  +     + P+  K  + +     + 
Sbjct: 370 SYRELPIRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVRPDQIKDEFKRTLELMVA 429

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDI 242
           ++    +     R                  D   T  +   D M     +      D++
Sbjct: 430 VYADFNITDYRFRLS--------------YRDPNNTDKYFDDDAMWEKAQAMLKAAMDEL 475

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    DV   ++  +L   + +S   ++    F    ++      T+
Sbjct: 476 ELDYFEAEGEAAFYGPKLDV---QVKTALGMEETLSTIQLD----FLLPERFD----LTY 524

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G DG++ +  +  +  G +  +   +    +     +P  +AP + ++I +    +   
Sbjct: 525 VGEDGENTHRPVVIHR-GIVSTMERFVAYLTEVYKGAFPTWLAPIQATIIPVSV--EAHS 581

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +   +I  RL   G  V  DD  E++G +   +     P Q++VG
Sbjct: 582 EYAYEIKERLQAQGLRVEVDDRNEKMGYKIRASQTQKVPYQLVVG 626


>gi|269956006|ref|YP_003325795.1| prolyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304687|gb|ACZ30237.1| prolyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
          Length = 607

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 100/245 (40%), Positives = 143/245 (58%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASH+L++R G I + + GIY+WLPLG + L  V AI+REE 
Sbjct: 12  RLSSLFVRTLREDPADAEVASHRLLIRAGYIRRAAPGIYTWLPLGLRVLAKVEAIVREEM 71

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P L   + +  +GR++ YG  + RL DR     +  PTHEE+ T + +  
Sbjct: 72  AAIGGQEVHFPALLPREPYEATGRWEEYGPNLFRLQDRKRADYLLAPTHEEMFTLLVKDL 131

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T +QIQ K+RDE RPR G++R REF+MKD+YSFD T  G   +Y +   +Y
Sbjct: 132 YSSYKDLPLTLFQIQTKYRDEARPRAGLIRGREFVMKDSYSFDHTDAGLDEAYQRHRDAY 191

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL  + + A SG +GG  S EF+  +  GE     S       + +  T   +
Sbjct: 192 ERIFTRLGLDYVIVSAMSGAMGGSRSEEFLSPSVIGEDTFVRSPGGYAANVEAVITPVPE 251

Query: 242 IISLN 246
            I  +
Sbjct: 252 AIGYD 256



 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 21/177 (11%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+       ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 418 GTIEAAEVRAGDPAPDGSGPLELARGIEMGHIFQLGRKYAEALGLKVLDENGKAVTVTMG 477

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R +AA+ E++HD +G+ WP  VAP  + ++      +V   A E +   L   
Sbjct: 478 SYGIGVTRALAALAEANHDERGLAWPAHVAPAHVHVVATGRGAEVFDAAAE-LAEGLVAN 536

Query: 376 GCDVFWDDM-GEQIGSQFAVAD--------LLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           G +V +DD      G +FA A+        ++          + ++D  VE++ R  
Sbjct: 537 GVEVVYDDRPKVSPGVKFADAELLGVPLLVVV---------GRGLADGVVEVRPRAG 584


>gi|119513050|ref|ZP_01632106.1| threonyl-tRNA synthetase [Nodularia spumigena CCY9414]
 gi|119462292|gb|EAW43273.1| threonyl-tRNA synthetase [Nodularia spumigena CCY9414]
          Length = 602

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 152/441 (34%), Gaps = 39/441 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L      Q   G+  W P G      +   +++EQ + G + + 
Sbjct: 190 EEALRRDHRKLGKELGLFI-FSEQVGPGLPLWTPKGTLLRSVLEDFLKKEQLKRGYLPVV 248

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  L   +++A       +  P +      I++S ++S
Sbjct: 249 TPHIARVDLFKTSGHWQKYKEDMFPLMSDDEEAAALEQGFVLKPMNCPFHIQIYKSELRS 308

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    +    +R E     G +        D     +TPE     +  +    L +
Sbjct: 309 YRELPIRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPEQLDSEFLNVVDLILSV 368

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F  L LK+   R                  D    +   S +  D    +     + +  
Sbjct: 369 FKSLQLKNFKARLS--------------FRDPASDKYIGSNEVWDKAEGAIRRAVEKLGM 414

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    D       D+L    ++    ++                  +  
Sbjct: 415 NYFEGIGEAAFYGPKLDFI---FSDALEREWQLGTVQVDYNLP--------ERFDLEYVA 463

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +     G++  +  ++    +     +P  +AP +  L+ +    +   D
Sbjct: 464 EDGSRQRPVMIHRAPFGSLERLIGILI---EEYAGDFPLWLAPVQARLLPVG---EAQLD 517

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + + A++   G     D  G+++G     A+    P+  ++G+K V  + + I+ R +
Sbjct: 518 FAKDVAAKMVAEGIRAEVDTSGDRLGKIIRNAEKQKIPVMAVIGAKEVESNSLSIRTRAS 577

Query: 424 GIREDMSLEEVINYASHRFSN 444
           G    + ++EV++      +N
Sbjct: 578 GELGAIPVDEVVDKMKQAIAN 598


>gi|28212194|ref|NP_783138.1| prolyl-tRNA synthetase [Clostridium tetani E88]
 gi|81841121|sp|Q890M2|SYP_CLOTE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28204638|gb|AAO37075.1| prolyl-tRNA synthetase [Clostridium tetani E88]
          Length = 570

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 117/293 (39%), Positives = 167/293 (56%), Gaps = 6/293 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E P +AEI SHKLMLR GM+ + + G+Y+++P G + +  +  I+REE
Sbjct: 1   MKLSNMLVSTLREVPAEAEIPSHKLMLRAGMMRKMASGVYNFMPFGLRVIKKIEDIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E     L  ++LW ESGR+D +G EM RL DRN++    GPTHEEV TDI R+
Sbjct: 61  MDNAGAQEFLASALLPSELWKESGRWDVFGPEMFRLQDRNNREFCLGPTHEEVFTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPRFG+MRSREF+MKDAYSFD   E    SY KM+ +
Sbjct: 121 EINSYKQLPLNLYQIQTKYRDERRPRFGLMRSREFIMKDAYSFDKDYEDLDVSYKKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   + A+SG +GG  S EF+V ++ GE ++                + +
Sbjct: 181 YHNIFIRCGLECNCVEADSGAMGGAGSAEFMVKSEVGEDEIAFCDSC------GYGANIE 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
              +++   +Q      A  +  N K  D L +   ++   +    I+    K
Sbjct: 235 KAPAISEKFDQEELKELAKIETPNVKTIDQLIKFLEINPAKLVKTLIYKVDDK 287



 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 73/211 (34%), Positives = 104/211 (49%), Gaps = 3/211 (1%)

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKY 294
              ++                   D       D  P        ARGIEVGHIF  GTKY
Sbjct: 357 IGANETGYHYKNANYKRDFEGIVGDYRKVIQGDKCPLCGGNIEIARGIEVGHIFKLGTKY 416

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           S  M A F    G+   + MG YGIG  R +AA IE +HD  GI+WP S+AP+ + ++ +
Sbjct: 417 SESMGANFLDEKGESRPLVMGCYGIGVSRTMAAAIEQNHDENGIVWPLSIAPYHVIVVPV 476

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              D+    A E+IY +L  +G +V  DD  E+ G +F  ADL+G P++V VG K + + 
Sbjct: 477 ITKDEEQMKAAEEIYNKLKSMGVEVLLDDRAERPGVKFKDADLIGIPIRVTVGKK-IKEG 535

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           KVE K R     E +++E+V +     F  +
Sbjct: 536 KVEYKLRKEEDLEILNIEQVYDKVREEFEKS 566


>gi|323473769|gb|ADX84375.1| threonyl-tRNA synthetase [Sulfolobus islandicus REY15A]
          Length = 545

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 152/443 (34%), Gaps = 39/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +    D  +   KL L +    +   G+  + P GQ   + + A +RE  +  G
Sbjct: 128 YLTWLEKAEETDHRLIGEKLDLFSFH-EEAGSGLVLFHPKGQTIRNELIAFMREINDSMG 186

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+    +   D+W  SG Y  Y  +++ + +         P +      I++S  ++Y
Sbjct: 187 YQEVYTSHVFKTDIWKISGHYTLYRDKLI-VFNMEGDEYGVKPMNCPAHILIYKSKPRTY 245

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +    +R E +   +G++R R F+  D + F    +  +     +  +    
Sbjct: 246 RDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVW 305

Query: 185 FHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                    I     + P     S E                   +    +  +   +  
Sbjct: 306 HKFGFKDDDIKPYLSTRPDESIGSDE-----------------LWEKATNALISALQESG 348

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E+  A Y    D    ++ DSL    ++S   ++    F    ++       + 
Sbjct: 349 LKFGIKEKEGAFYGPKIDF---EIRDSLGRWWQLSTIQVD----FNLPERF----KLEYI 397

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG       +     G++    A++     GK   W   ++  ++ ++ I        
Sbjct: 398 DKDGIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTW---LSSVQVRVLPIT---DEVN 451

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   + K       D  GE +  +   A   G P  +IVG K  S+  V ++ R 
Sbjct: 452 EYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRARG 511

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                ++  E+ +       +  
Sbjct: 512 NIEVRNVKFEKFLELLITEIAQR 534


>gi|27467857|ref|NP_764494.1| prolyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57866745|ref|YP_188412.1| prolyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251810694|ref|ZP_04825167.1| prolyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876305|ref|ZP_06285172.1| proline--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|293366773|ref|ZP_06613449.1| proline-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|81175026|sp|Q8CST7|SYP_STAES RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81175027|sp|Q5HPS8|SYP_STAEQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|27315402|gb|AAO04536.1|AE016747_33 proline-tRNA ligase [Staphylococcus epidermidis ATCC 12228]
 gi|57637403|gb|AAW54191.1| prolyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251805854|gb|EES58511.1| prolyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295330|gb|EFA87857.1| proline--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|291319074|gb|EFE59444.1| proline-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329736329|gb|EGG72601.1| proline--tRNA ligase [Staphylococcus epidermidis VCU028]
 gi|329736632|gb|EGG72898.1| proline--tRNA ligase [Staphylococcus epidermidis VCU045]
          Length = 567

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 191/366 (52%), Gaps = 6/366 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWSAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REFLMKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKYRDEKRPRFGLLRGREFLMKDAYSFHSDEASLDATYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +    +  D+    E  +  
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVY-SNESDYAANIEKAEVV 239

Query: 241 DIISLNSIV----EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              S          +   P   T+    E L   L E  +     I+   I +    +  
Sbjct: 240 YHPSHKHSALAELTKVETPNVKTAQEVAEYLKRPLDEIVKTMIFKIDGEFIMFLVRGHHE 299

Query: 297 PMSATFKGADGKDHYVQMGS-YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                 K   G +H         +  +      +    D    I+ D+      + +   
Sbjct: 300 LNEVKLKSYFGTEHVEMATPDEIVNLVDANPGSLGPIFDKDIKIYADNYLQDLNNFVVGA 359

Query: 356 AHDQVC 361
             D   
Sbjct: 360 NEDHYH 365



 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 99/166 (59%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GIIW
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQNNDENGIIW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF I LI I       R   +++Y +L     DV +DD  E+ G +F  +DL+G 
Sbjct: 464 PKSVTPFDIHLITINPKKDDQRTLGDQLYQKLMDS-YDVLYDDRKERAGVKFNDSDLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           P++V+VG +   +  VE+K R+ G+ E++ ++E+  Y    F N +
Sbjct: 523 PVRVVVGKR-AEEGIVEVKQRINGLSEEVQIDELEYYLQELFKNIK 567


>gi|213964749|ref|ZP_03392949.1| prolyl-tRNA synthetase [Corynebacterium amycolatum SK46]
 gi|213952942|gb|EEB64324.1| prolyl-tRNA synthetase [Corynebacterium amycolatum SK46]
          Length = 590

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 172/386 (44%), Gaps = 21/386 (5%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G I + + G+YSWLPLG K L NV  ++REE 
Sbjct: 4   RMSQLFLRTLREDPADAEVPSHKLLVRAGYIRRTAPGVYSWLPLGLKVLRNVEKVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E++ P L   + +  + R+  YG E+ RL DR     + GPTHEE+     +  
Sbjct: 64  EGIGAQELAFPALLPREPYEATNRWTEYGPELFRLKDRKGADYLLGPTHEEMFALAVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T +QIQ K+RDE RPR G++R REF+MKD+YSFD+  EG ++SY +   +Y
Sbjct: 124 FSSYKDFPTTLFQIQTKYRDEARPRAGILRGREFVMKDSYSFDMDDEGLENSYQQHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLG+K     A SG +GG  S EF+ +++ GE     S D  ++    E      
Sbjct: 184 QRIFDRLGIKYEICHATSGAMGGSASEEFLAVSENGEDSFVVSTDG-EYAANVEAVKIPA 242

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +            P A   +  N     +L +    +  G EV                 
Sbjct: 243 VEPQPI----EGQPEAKVYESPNCTTIAALVDWANGADLGREVTAADTLKCVLVAVDPKK 298

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                             G             D +       VA        ++  D   
Sbjct: 299 VDKEGNALPEQLTAILVPG-------------DREVDEKRLEVAFEPGEARLLEDKDFAA 345

Query: 362 RDACEKIY---ARLSKVGCDVFWDDM 384
            D   K Y     L+  G  V  D  
Sbjct: 346 NDFLIKGYVGPQGLADRGVKVLADPR 371



 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 5/216 (2%)

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFY 289
                   ++   +  +V           DV   +  D  PE        RGIE+GHIF 
Sbjct: 376 TNWITGANEEGKHIVDVVAGRDFQIDGICDVAEVRDGDPAPEGHGTLKIERGIEIGHIFQ 435

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            G KY+          +GK     MGSYGIG  R+VA + E   D KG+ WP + AP+K+
Sbjct: 436 LGRKYTNAFEIDILDVNGKRARPTMGSYGIGVSRLVAVLAEQQLDEKGLKWPVAAAPYKV 495

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGS 408
            +     + +    A +     LS+ G +V +DD      G +F  A+LLG P  VI G 
Sbjct: 496 HIAVAGKNAEAAEAAEQL-AEDLSQQGIEVLFDDRPKVSPGVKFKDAELLGMPFVVIFG- 553

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  +D KVE+++RLT   ++++ + +  + +   S 
Sbjct: 554 RGYADGKVELRNRLTNETDEVAADGIAAHVAELVSK 589


>gi|309364909|emb|CAP23504.2| CBR-TARS-1 protein [Caenorhabditis briggsae AF16]
          Length = 729

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 147/433 (33%), Gaps = 43/433 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     HQ S G   W P G    + +   IR++  R G  E+ 
Sbjct: 319 EEAAKRDHRKLGKEQDLF--FFHQLSPGSAFWYPKGAHIYNKLVDFIRKQYRRRGFTEVI 376

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +  LW  SG +  Y ++M +  +   +     P +      +F     +Y  LPF
Sbjct: 377 TPNMYNKKLWETSGHWQHYSEDMFK-IEVEKEEFGLKPMNCPGHCLMFGHMPHTYNELPF 435

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F    +  R+E+     G+ R R F   DA+ F    + S+    +        + ++ 
Sbjct: 436 RFADFGVLHRNEMSGALTGLTRVRRFQQDDAHIFCRQDQISEE-IKQCLDFLEYAYEKVF 494

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P G     E                   D          +      ++ 
Sbjct: 495 GFTFKLNLSTRPEGFLGKIE-----------------TWDQAEADLTEALNATGRKWALN 537

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L  N + +   ++    F    ++      ++    G+ 
Sbjct: 538 PGDGAFYGPKIDI---TIQDALKRNFQCATIQLD----FQLPNQFD----LSYFDEKGEK 586

Query: 310 HYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               M    +     R+ A + ES                           +  RD  + 
Sbjct: 587 QRPVMIHRAVLGSVERMTAILTESYGGKWPFWLSPRQCKIITV-------HESVRDYAKD 639

Query: 368 IYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +  ++   G +V +D+  G+ +  Q   + L  F   +++G+K   +  V ++ R   +R
Sbjct: 640 VKKQIFDAGFEVEYDEFCGDTMNKQVRNSQLAQFNFILVLGAKEKENGTVNVRTRDNAVR 699

Query: 427 EDMSLEEVINYAS 439
            ++ +E++++   
Sbjct: 700 GEVPIEKLLSKFR 712


>gi|19112749|ref|NP_595957.1| mitochondrial proline-tRNA ligase (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74676105|sp|O74765|SYPM_SCHPO RecName: Full=Probable prolyl-tRNA synthetase, mitochondrial;
           AltName: Full=Proline--tRNA ligase; Short=ProRS; Flags:
           Precursor
 gi|3687477|emb|CAA21147.1| mitochondrial proline-tRNA ligase (predicted) [Schizosaccharomyces
           pombe]
          Length = 425

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 135/418 (32%), Positives = 208/418 (49%), Gaps = 29/418 (6%)

Query: 24  KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           +L++  G I     GI+ +LPLG +  + +  ++       GA  +S+  L S ++W +S
Sbjct: 29  QLLIDMGFIQPSMPGIFQYLPLGLRVQNKICDLLHISMRSLGASAISLAHLSSKEIWEKS 88

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           GR+   G E+ RL DRND+ M   PTHEE +T    + I S + LP   YQI  KFRDEL
Sbjct: 89  GRWQKTGSELFRLHDRNDREMCLAPTHEEDVTRTMATIIDSQKQLPIRVYQIGRKFRDEL 148

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RPR G++R REF+MKD Y+FD+    +  +Y  +  +Y   F  +GL  + ++A +G IG
Sbjct: 149 RPRGGLLRGREFMMKDLYTFDIDKASAMKTYEDVLQAYHTFFKEVGLPFVMVKAATGNIG 208

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           G+LSHEF      GE  ++       +   SE  D     S                   
Sbjct: 209 GNLSHEFHYRHPVGEDVIYTCPSCH-YSTNSEMLDLSKTSS------------------- 248

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +      ++  S   IEVGH FY G  YS   +AT +    K   + MG YGIG  R
Sbjct: 249 --DISCPNCNDQLTSTTAIEVGHAFYLGKIYSSKFNATVE-VKNKQEVLHMGCYGIGVSR 305

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-VGCD-VFW 381
           ++AAV   + D KG++WP S+AP+K+ ++    +      + E +Y   +  VG D V  
Sbjct: 306 LIAAVAHVTKDAKGLVWPSSIAPWKVLVVPTSDNH---IQSAETVYDATANVVGFDNVLL 362

Query: 382 DDMGEQI-GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +D   +  G +   A+L+G+P  ++VGS+F  +   EI  R +G R  +  + +    
Sbjct: 363 EDRQNRAFGYKMRDAELIGYPFVIVVGSRFQEEGICEIIVRSSGERYKLDKDSLHQVL 420


>gi|268678723|ref|YP_003303154.1| threonyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
 gi|268616754|gb|ACZ11119.1| threonyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
          Length = 605

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 151/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD     ++L L T    +   G+  WLP G K    +  ++     + G
Sbjct: 200 YVTMIEEAKKRDHRKIGNELKLFT-FDDEVGAGLPIWLPQGGKLRAKLEKLLFTAHRKRG 258

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D W  SG Y +YG+ M      ++      P +      +F+S ++SY
Sbjct: 259 YQPVRGPEILKSDAWKISGHYQNYGENM-YFTVIDEAEYGIKPMNCLGHIKVFQSEVRSY 317

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F++  +  R E      G+ R REF   DA+ F  TP+  K +  ++      I
Sbjct: 318 RDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFC-TPDQIKENVLEILSFVDSI 376

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G                          T   +    + + +          D+   
Sbjct: 377 MKTFGFHYEMEI------------------STRPEKSIGDERYWEAATQGLKNALDENGI 418

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     ++    F    ++      ++  
Sbjct: 419 TYGIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPERFD----ISYVD 467

Query: 305 ADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           A+ +    V +    +G+      ++            +       + + I        +
Sbjct: 468 ANNEHARPVMLHRAILGSFERFIGILIEHT------SGEFPFFLAPTQVVIVPISDAHLE 521

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L     DV      E +  +   A+ +  P+ +++G   V +  V ++ R  
Sbjct: 522 YAKSVANALMAEEIDVEVSSKNESLNKRIRNAETMRVPMILVIGDAEVENQSVAVRDRRE 581

Query: 424 GIREDMSLEEVINYASHRFSN 444
             + ++S  E+I     + S 
Sbjct: 582 RTQYNLSKVELIKTLKEKLSE 602


>gi|225461914|ref|XP_002265484.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 745

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 156/441 (35%), Gaps = 38/441 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  +Y   I +    D  +   K  L     H  S G + +LP G +  + +   I+ + 
Sbjct: 337 RLKEYIARIEEAKKYDHRLLGVKQELF--FCHPLSPGSWFFLPHGGRIYNKLMEFIKAQY 394

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  PT+ +  LW  SG   +Y + M  + +   +     P +      +F   
Sbjct: 395 RERGYHEVFSPTMYNMQLWETSGHAANYKENMF-VFEVEKQEFGLKPMNCPGHCLMFEHR 453

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP       +  R+E      G+ R R F   DA+ F       K     +   
Sbjct: 454 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCR-ESQIKDEVMGVLDF 512

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
               ++  G     ++  + P                  +     +  +    +     +
Sbjct: 513 INYAYNIFGFTYE-LKLSTRP-----------------EKYLGDLETWEKAEAALTEALN 554

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  I E   A Y    D+    + D+L    + +   ++    F   +++ L  SA
Sbjct: 555 QSGKPWEINEGDGAFYGPKIDI---SVSDALNRKFQCATLQLD----FQLPSRFDLSYSA 607

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                  ++  V +    +G++  + A++    +     WP  ++P +  +  +    Q 
Sbjct: 608 E--DEAKRERPVMIHRAILGSVERMFAILL---EHYKGKWPFWLSPRQAIVCPVSEKSQ- 661

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++  ++ + G  V  D    +I  +   A L  +   ++VG +  +  +V ++ 
Sbjct: 662 --PYALQVRDQIHQAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEANTRQVSVRV 719

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R  G    MS+E +++Y    
Sbjct: 720 RDKGDHSVMSMENLLSYFKSE 740


>gi|330443967|ref|YP_004376953.1| threonyl-tRNA synthetase [Chlamydophila pecorum E58]
 gi|328807077|gb|AEB41250.1| threonyl-tRNA synthetase [Chlamydophila pecorum E58]
          Length = 635

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 147/445 (33%), Gaps = 42/445 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD  +   KL L +    +++ G+  + P G    D +    +E   
Sbjct: 223 LKEHLHQLEEAKKRDHRVLGVKLDLFSQ--QEYAAGMPFFHPRGMIIWDALINFWKELHA 280

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  ++  P L +  LW  SG + +Y + M  L    +      P +       +++H+
Sbjct: 281 RAGYQQIKTPQLMNQRLWEISGHWQNYKENMYTLTLDEEN-YAIKPMNCPGCMLYYKTHL 339

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY+  P    +I    R E+     G+MR R F   DA+   LTPE  +     +    
Sbjct: 340 HSYKEFPLRVAEIGHVHRHEVSGALSGLMRVRAFHQDDAH-VFLTPEQVEEETLNILDLV 398

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +++H  GL    +   + P  G                   S +  +    +     + 
Sbjct: 399 AKLYHTFGLAY-HLELSTRPKTG----------------TIGSDELWEHATSALQRALEK 441

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             S   I  +  A Y    D+H           K    R  + G I              
Sbjct: 442 SGSSFIITPEEGAFYGPKIDIHV----------KDAINRTWQCGTI-QLDMFLPERFHLE 490

Query: 302 FKG-ADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     GK   V +     G   R +  +IE       +                     
Sbjct: 491 YTNAEGGKSIPVMLHRALFGSIERFLGILIEHFKGKFPLWISPEQVRLITVA-------D 543

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  ++  +   +G  V  DD  E +  +   A  +     V +G + V+++ + I+
Sbjct: 544 RHIPRARELAQKWQNLGLVVTVDDASESVSKKIRNAQTMQVNYMVTLGDQEVANNTLAIR 603

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R   +  D+S E+ +N      ++
Sbjct: 604 TRDNRVINDVSEEKFLNAILEEKNS 628


>gi|299135303|ref|ZP_07028494.1| threonyl-tRNA synthetase [Afipia sp. 1NLS2]
 gi|298590280|gb|EFI50484.1| threonyl-tRNA synthetase [Afipia sp. 1NLS2]
          Length = 681

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 137/434 (31%), Gaps = 39/434 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      ++ L      +   G+  W   G      + A +R       
Sbjct: 257 YLKQLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWTLFQAIIAYMRRRL-AAD 313

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M       D     +     P +      IF+ 
Sbjct: 314 YDEVNAPQMLDKSLWETSGHWEWYRENMFAAQSAGDEAEDKRWFAIKPMNCPGHVLIFKH 373

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR LP    +  +  R E      G+MR R F   DA+ F    + +        +
Sbjct: 374 GLKSYRELPIRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIFCTEDQLADECLKINDL 433

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                 +      + ++  + P     +      A++  T+V             E    
Sbjct: 434 ILSTYANFGFEGELTVKLSTRPDKRVGTDAAWDHAESVMTKVL---------AQIEAKSG 484

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           + I +  SI     A Y    +     L D++    +     ++      FG        
Sbjct: 485 NRIKT--SINPGEGAFYGPKFEY---VLRDAIGREWQCGTTQVDFNLPERFG-------- 531

Query: 300 ATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +      K   V +     G++     ++     G   +W   V     ++ +     
Sbjct: 532 AFYIDEHSNKVAPVMVHRAICGSLERFTGILIEHFAGHFPLWLAPVQAVITTITSDGD-- 589

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   +++      G  V  D   E+I  +     L   P  ++VG K      V I
Sbjct: 590 ----DYAREVFEACRAAGLRVEIDLRNEKINYKVREHSLAKVPALLVVGKKEAETRAVSI 645

Query: 419 KHRLTGIREDMSLE 432
           +      +  + L+
Sbjct: 646 RRLGREGQTVLPLD 659


>gi|289642063|ref|ZP_06474216.1| threonyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
 gi|289508136|gb|EFD29082.1| threonyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
          Length = 610

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 138/442 (31%), Gaps = 34/442 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD  +    L L         KG+  WLP G    D +    RE +   G
Sbjct: 191 YLWQLEEAKKRDHRVIGEALDLFA-FSPAVGKGLPLWLPNGTIVRDELETWAREVERAHG 249

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +DL+  SG    Y  ++    D + +     P +      ++++  +SY
Sbjct: 250 YQRIVTPHITKSDLYYISGHLPYYADDLYSPIDIDGEEYYLKPMNCPHHHMVYKARPRSY 309

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +    +R E   + FG+MR R F   DA+ +    +        M +  L  
Sbjct: 310 RELPLRLAEYGTVYRYERSGQLFGMMRVRGFSQNDAHIYCTREQAIDEFLAVMRLHALYY 369

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     + A   P   +  H                +              +    
Sbjct: 370 DKLGIEDYHMVLALRDPKNTEKYH--------------GDELMWQEAERITRDAMEQSGI 415

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    D     +          S   +++     FG         TF  
Sbjct: 416 PYIEDIGGAAHYGPKVDFVLTSVT---GREFAASTNQVDLYMPEQFG--------LTFTN 464

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G+ +  V +    +G+     A +    +     +P  +AP ++ ++ I        D
Sbjct: 465 RHGEAEQAVVLHRAPLGSHERFVAFLI---EHFAGAFPVWLAPVQVRVVPI---SDRQAD 518

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               ++ RL   G     DD    + ++   A+    P   ++G + + +  V ++ R  
Sbjct: 519 GAAAVWRRLVDAGIRAELDDSDNTMQAKIRRAEQQKVPYVAVIGDRELENDSVSVRARGR 578

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                  + E+I       ++ 
Sbjct: 579 RNLGSRPVPELIEKLGRLIADR 600


>gi|257784517|ref|YP_003179734.1| prolyl-tRNA synthetase [Atopobium parvulum DSM 20469]
 gi|257473024|gb|ACV51143.1| prolyl-tRNA synthetase [Atopobium parvulum DSM 20469]
          Length = 565

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 120/369 (32%), Positives = 178/369 (48%), Gaps = 22/369 (5%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  + P L+E+P +A +ASH+L+LR GMI + + G+YS+LPL  ++L  + AIIR+E +
Sbjct: 1   MSSLYAPTLKEDPAEAVLASHRLLLRAGMIRKTAAGLYSYLPLAWRSLLKIEAIIRDEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+ VP +  A+LW ESGR+D YG E++R+ DR+D+    GPTHEE  TD+ R+ +
Sbjct: 61  GIGAQEILVPIMTPAELWEESGRWDVYGDELMRMHDRHDRQFALGPTHEETFTDLIRNEL 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           KSY+ LP T YQIQ KFRDE RPRFG+MR REF+MKD YSF    E  +  Y++  V+Y 
Sbjct: 121 KSYKQLPVTLYQIQDKFRDERRPRFGLMRGREFIMKDGYSFSANQESLQECYDQEKVAYQ 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD------------- 229
            +  R  L+++ + A+SG IGGD S EF+ LA+ GE  +                     
Sbjct: 181 NVCDRTRLRALQVVADSGQIGGDTSVEFMALAEAGEASLVYCDCGYAADTEAAAAKIKVE 240

Query: 230 --FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
              P         DI S++ + E      AAT          +L +           G  
Sbjct: 241 EREPGQMCEIHTPDIGSIDDVAEFLHVSPAATRKAL------ALVDGNGKPVVCFVPGT- 293

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                  +      +     ++        G      +   I    D         +   
Sbjct: 294 HELNEVKAEHAFGEYHMMTDEELDEFGLIKGFIGPVGLPEGIRVVGDLSLEDTQWWLCGA 353

Query: 348 KISLINIKA 356
             +  ++  
Sbjct: 354 NKADYHLDH 362



 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/193 (39%), Positives = 111/193 (57%), Gaps = 2/193 (1%)

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+   +  D  PE        RGIEVG +F  GTKYS  ++ATF   +G+D  + MG
Sbjct: 373 EWKDLVTSQEGDICPECGLPLHAARGIEVGQVFQLGTKYSSALNATFTDENGQDKPLVMG 432

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R++AAV+E  +D KGI WP SVAP+++S++ +   D    DA   +       
Sbjct: 433 CYGIGVSRLLAAVVEQYNDEKGIKWPVSVAPYEVSVLCLSNKDPEIWDAAGAVADACVAA 492

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +   DD  E+ G +FA ADL+GFP QVIVG K V++   E+K R TG R +++L+EV 
Sbjct: 493 GLETVVDDRVERPGVKFADADLIGFPWQVIVGKKGVTNGIAEVKERATGERFEVALDEVA 552

Query: 436 NYASHRFSNNRPV 448
           ++ + +    R +
Sbjct: 553 SWLAEKILPEREL 565


>gi|283457978|ref|YP_003362585.1| threonyl-tRNA synthetase [Rothia mucilaginosa DY-18]
 gi|283134000|dbj|BAI64765.1| threonyl-tRNA synthetase [Rothia mucilaginosa DY-18]
          Length = 706

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 70/439 (15%), Positives = 134/439 (30%), Gaps = 32/439 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L +        G+    P G      +   +R    + G   
Sbjct: 285 RIAEAERRDHRRLGRELDLFS-FPKNIGPGLPVIHPKGGVIKREMEDYVRTRHIQEGFQY 343

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +S P +   DL+  SG    Y   M    + ++        +  +  +I+RS  +SYR L
Sbjct: 344 VSTPHISKEDLFYTSGHLPYYADGMFPPMELDNGHYRLKAMNCPMHNEIYRSRGRSYREL 403

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F++    +RDE      G+ R R     D++S+    +        +    L +   
Sbjct: 404 PLRFFEFGTVYRDEKSGVLQGLTRVRMITQDDSHSYVTKEQAPDE-VRHLLKFMLSLLED 462

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G+    +   +    GD   +FI   +             +           +      
Sbjct: 463 FGMTDFYLELSTRDTEGDKKDKFIGTDEQ-----------WEEATAVLEQVAKETGLELV 511

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                 A Y       + +  D++    ++S    +      FG          ++ ADG
Sbjct: 512 PDPGGAAFYGPKI---SVQAKDAIGRTWQMSTVQYDFNQPSRFG--------LEYQAADG 560

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                  + S   G++     V+   + G    W   V    + +       +   D   
Sbjct: 561 TVQEPVMIHSAKFGSIERFLGVLTEHYAGAFPAWLAPVQVIGVPVA------EAFNDYMT 614

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +I  +L   G  V  D   ++   +   A     P  +I G +      V  + R     
Sbjct: 615 EIADKLRAHGVRVEVDYGSDRFTKKIRTASTEKVPFILIAGGEDAEHGAVSFRFRGNKQE 674

Query: 427 EDMSLEEVINYASHRFSNN 445
             + ++E +        N 
Sbjct: 675 NGVPVDEAVARIVEHIRNR 693


>gi|225016667|ref|ZP_03705859.1| hypothetical protein CLOSTMETH_00576 [Clostridium methylpentosum
           DSM 5476]
 gi|224950631|gb|EEG31840.1| hypothetical protein CLOSTMETH_00576 [Clostridium methylpentosum
           DSM 5476]
          Length = 646

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 72/451 (15%), Positives = 162/451 (35%), Gaps = 38/451 (8%)

Query: 2   RRSK---YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           + S+   Y   + +   RD  +   KL   T  +    +G+   LP G + +  +   + 
Sbjct: 225 KASELEAYLAAVEEAKKRDHNVIGRKLGYFTT-VDVIGQGLPVLLPKGARVIQILQRFVE 283

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTD 116
           +E+ + G +    P    +D +  SG +  Y + M  +   +++ +     P        
Sbjct: 284 DEEEKRGYLLTKTPYFAKSDFYKISGHWQHYREGMFVMGDEEKDKEVFALRPMTCPFQFQ 343

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
            + + ++SYR+LP  + +    FR+E      G++R R+F + + +     P+  +  + 
Sbjct: 344 AYLNEMRSYRDLPLRYNETSTLFRNEASGEMHGLIRVRQFTISEGHLACR-PDQVEEEFK 402

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +       +             E+  +  D+++ F    +    +   S +  +      
Sbjct: 403 QCLELAKFM------------LETLGLDEDVTYRFSKWDENNRDKYIGSAEEWENVQNLM 450

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
               + +    +  +   A Y    D+  + ++    +   +    I+    F   +++ 
Sbjct: 451 RGILNHLELDYTEADGEAAFYGPKLDIQIKNVY---GKEDTLITIQID----FQLASRFD 503

Query: 296 LPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           +     +   DG+  Y   +    +G      A++   + G   +W             I
Sbjct: 504 MV----YTDTDGQKKYPYVIHRTSLGCYERTLALLLEKYAGALPLW------IAPEQARI 553

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   DA       L K G  V  DD  E+IG +   A L   P  +++G K V  +
Sbjct: 554 LPIGERQHDAAYACRDELRKAGLRVEVDDRSEKIGYKIREAQLEKIPYMLVIGDKEVEAN 613

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++ R  G    M + + + +A +     
Sbjct: 614 AVSVRSRKHGEMGAMPVTQFMEHALNEVRTK 644


>gi|323481345|gb|ADX80784.1| prolyl-tRNA synthetase [Enterococcus faecalis 62]
          Length = 572

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 107/235 (45%), Positives = 147/235 (62%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ + AI+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKAIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  + C     D+    E
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTI-CYSTESDYAANLE 234



 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 107/187 (57%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +  D  P+   V    +GIE+GHIF  GT+YS  M AT    +G++  V MG Y
Sbjct: 382 EDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E + D +GI WP  +APF + ++ +   D+      +++ A +++ G 
Sbjct: 442 GIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+ + 
Sbjct: 502 EVLVDDRNERAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELEST 560

Query: 438 ASHRFSN 444
            S   + 
Sbjct: 561 LSILMNT 567


>gi|302335688|ref|YP_003800895.1| prolyl-tRNA synthetase [Olsenella uli DSM 7084]
 gi|301319528|gb|ADK68015.1| prolyl-tRNA synthetase [Olsenella uli DSM 7084]
          Length = 571

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 112/226 (49%), Positives = 155/226 (68%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S+ + P L+E+P DAE+ASH+L+LR GMI + + G+YS+LPL  +++  + AIIR+E 
Sbjct: 6   KMSRLYAPTLKEDPTDAELASHRLLLRAGMIRKGAAGLYSYLPLAWRSIRKIEAIIRDEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA EM VP L  ADLW +SGR++ YG E++R+ DR+  +   GPTHEE  TD+  + 
Sbjct: 66  ETIGAQEMQVPILTDADLWHQSGRWEVYGPELMRIDDRHGHSYALGPTHEESFTDLVHNE 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +KSY+ LP T YQ+Q KFRDE RPRFG+MR REF+MKDAYSF  T E  +  Y +   +Y
Sbjct: 126 LKSYKQLPVTLYQVQDKFRDERRPRFGLMRGREFIMKDAYSFSATQESLRQCYEEEKAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            RI  R GL+++P+ A+SG IGGD S EF+ LAD GE ++      
Sbjct: 186 ARIAERCGLRALPVVADSGQIGGDSSVEFMALADAGEAELVYCDGC 231



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 107/222 (48%), Gaps = 8/222 (3%)

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVG 285
                 +E         L    E       +  DV   +  D  P        ARGIE+ 
Sbjct: 355 WWIVGANEADYHFVRAKLGRDFE-----IGSWVDVIGAREGDVCPSCGAALKGARGIEIS 409

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            +F  GTKYS  M ATF   DG++    MG YGIG  R +AAV+E  HD  GI WP SVA
Sbjct: 410 QVFQLGTKYSEAMGATFTDEDGREKPFLMGCYGIGVSRTLAAVVEQHHDEHGISWPVSVA 469

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P+++ +I +   D +     E++   L   G +V  DD  E+ G +F  ADL+GFP QV+
Sbjct: 470 PYEVEVIPLDVRDDLVWPVAERLATGLVDAGVEVVVDDRKERPGVKFNDADLMGFPFQVV 529

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR-FSNNR 446
            G K + D  VE+K R TG R ++ + E +   + R  +  R
Sbjct: 530 CGKKAIRDGNVELKLRATGERLELPIAEAVRAVAERVLAQRR 571


>gi|307169877|gb|EFN62386.1| Threonyl-tRNA synthetase, cytoplasmic [Camponotus floridanus]
          Length = 689

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 141/441 (31%), Gaps = 44/441 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   IR E  + G  E+ 
Sbjct: 283 EEAAKRDHRKIGKEQELF--FFHELSPGSCFFQPRGAYIYNTLVEFIRSEYRKRGFQEVI 340

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + ++ LW  SG +  Y + M    D   +     P +      IF    +S+R LP 
Sbjct: 341 SPNIYNSKLWQTSGHWQHYAENMFSF-DVEKETFALKPMNCPGHCMIFDVRCRSWRELPL 399

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +               ++   G
Sbjct: 400 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCSVEQIKDEMIA-ALEFLRHVYGIFG 458

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F +   T   +   S    D    +     +      ++ 
Sbjct: 459 FT------------------FNLCLSTRPEKYLGSLKVWDRAEKALEESLNAFGQPWTLN 500

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
            Q  A Y    D+    L D+L    + +   ++    F    ++    + ++   +G+ 
Sbjct: 501 PQDGAFYGPKIDI---TLMDALKRAHQTATIQLD----FQLPMRF----NLSYVNENGEK 549

Query: 310 HYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               +    I     R++A + ES             A     +           +   +
Sbjct: 550 TRPVIIHRAILGSVERMIAILTESYGGKWPYWLSPRQAMVVPVV-------SQFDEYAYE 602

Query: 368 IYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +  +L   G  V  D D  + +  +   A L  F   ++VG K  +   V I+ R   + 
Sbjct: 603 VKQKLWDAGVMVEVDTDSSDTLNKKIRNAQLAQFNFILVVGEKERNAGTVNIRTRDNVVH 662

Query: 427 EDMSLEEVINYASHRFSNNRP 447
            +M++EE+I           P
Sbjct: 663 GEMAVEELIAKLKIMKETRDP 683


>gi|319779147|ref|YP_004130060.1| Prolyl-tRNA synthetase [Taylorella equigenitalis MCE9]
 gi|317109171|gb|ADU91917.1| Prolyl-tRNA synthetase [Taylorella equigenitalis MCE9]
          Length = 582

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 122/235 (51%), Positives = 161/235 (68%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SKY +  L+E P +AE+ SHK MLR GMI +   GIY+++PLG K L  V AI+REE
Sbjct: 1   MLASKYHINTLKEAPAEAEVVSHKYMLRAGMIRKLGAGIYTYMPLGFKVLKKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GAIE+ +P +Q A+LW+++ R+++YG E+LR  DR+ +  I  PT EEV+TDI  +
Sbjct: 61  MNRAGAIELLMPIVQPAELWMKTERWNAYGPELLRFKDRHSRDFIIQPTSEEVITDIVAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + S+R LP  FY IQ KFRDE RPRFG+MR REFLMKDAYSFD T E +  SY KM+ +
Sbjct: 121 EVHSWRQLPLNFYHIQTKFRDERRPRFGLMRGREFLMKDAYSFDRTEEEANISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y+RIF RLGLK   + A++G IGG  SHEF V+A TGE  +  +    ++    E
Sbjct: 181 YVRIFTRLGLKFRAVNADTGSIGGSRSHEFQVIAQTGEDLIVYNPQ-SEYAANIE 234



 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/189 (35%), Positives = 102/189 (53%), Gaps = 3/189 (1%)

Query: 255 PYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D   +        RGIEVGH+F+ G KYS  + A +   +GK+  +
Sbjct: 385 PEPQVEDIRNVVEGDPTSDGVGTLAIDRGIEVGHVFFLGDKYSSKLRAVYLDENGKEAVI 444

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
           QMG YGIG  R+VAA IE +HD  GIIWP  +AP++I +  I  +  +  ++   ++Y +
Sbjct: 445 QMGCYGIGVSRIVAAAIEQNHDENGIIWPLPMAPYEIVICPIGWSKSEEVKNKSLELYEQ 504

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD   + G  F   +L+G P+++ VG + + D  +E++ R     + +SL
Sbjct: 505 LKAEGYDVILDDRDLRTGVMFTEWELIGVPIRITVGDRGLKDGVIEVQKRTEKEAKKLSL 564

Query: 432 EEVINYASH 440
            EVINY   
Sbjct: 565 NEVINYVKS 573


>gi|91977727|ref|YP_570386.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
 gi|91684183|gb|ABE40485.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Rhodopseudomonas palustris BisB5]
          Length = 687

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 139/443 (31%), Gaps = 38/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W   G     ++ A +R       
Sbjct: 263 YLKQIEEAEKRDHRRLGRELDLF--HFQEEGPGVVFWHAKGWSVFQSLVAYMRRRL-AGN 319

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-----AMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG +D Y + M       +           P +      IF+ 
Sbjct: 320 YDEVNAPQILDKVLWETSGHWDWYRENMFAAQSAGENAEDKRWFALKPMNCPGHVQIFKH 379

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + ++       +
Sbjct: 380 GLKSYRDLPLRMAEFGIVHRYEPSGAMHGLMRVRGFTQDDAHVFCTEAQLAEECLKINDL 439

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                        + ++  + P     + E    A+        +    +     +N   
Sbjct: 440 ILSTYSDFGFDGELTVKLSTRPDKRVGTDEMWDHAER-----VMATVLSEIKAQGDNRIK 494

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +I           A Y    +     L D++  + +     ++      FG        
Sbjct: 495 TEI------NPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVDFNLPERFG-------- 537

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +  ADG     V +     G+M     ++     G   +W   V     ++       
Sbjct: 538 AFYIDADGAKKAPVMVHRAICGSMERFIGILIEHFAGNFPLWLAPVQLVVATIT------ 591

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  +K+ A   + G  V  D   E+I  +     L   P  ++VG K      V +
Sbjct: 592 SEGDEYAKKVVAAARRAGLRVDIDLRNEKINLKVREHSLAKVPALLVVGRKEAETHSVSV 651

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  +  M+  + I      
Sbjct: 652 RRLGSDGQTVMATADAIAALVEE 674


>gi|257055068|ref|YP_003132900.1| prolyl-tRNA synthetase [Saccharomonospora viridis DSM 43017]
 gi|256584940|gb|ACU96073.1| prolyl-tRNA synthetase, family II [Saccharomonospora viridis DSM
           43017]
          Length = 586

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 172/386 (44%), Gaps = 27/386 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G + + + G YSWLPLG + L NV AI+REE 
Sbjct: 4   RMSSLFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGGYSWLPLGLRVLRNVEAIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  +GR+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DAIGAQEIQFPALLPKEPYETTGRWTEYGPSLFRLVDRKGADYLLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFDL  EG   SY     +Y
Sbjct: 124 YSSYKDYPVILYQIQTKYRDEARPRAGILRGREFIMKDSYSFDLDDEGLARSYELHRNAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           LRIF RLGL  + + A SG +GG  S EF+ +A+TGE   +      ++    E      
Sbjct: 184 LRIFDRLGLDYVVVAATSGAMGGSASEEFLAVAETGE-DTYVRSTESEYAANVEAVVTP- 241

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                  VE    P A      N    ++L +         ++G  F             
Sbjct: 242 -APPEQSVED--KPAAQVHYTPNTPTIETLVD----FLNAADLGRTFTAAD--------- 285

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                     V + +   G        I    D +  +     +     +  ++  D   
Sbjct: 286 ------TLKNVLVKTRMPGEEDWKLLGIGVPGDREVDMKRLEASLAPAEVALLEDSDFAA 339

Query: 362 RDACEKIY---ARLSKVGCDVFWDDM 384
                K Y     L   G     D  
Sbjct: 340 NPFLVKGYIGPGALQANGVRYLVDPR 365



 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 68/188 (36%), Positives = 102/188 (54%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+ +   V+ARGIE+GHIF  G KY+        G D K   + MG
Sbjct: 396 GTVEAAEVREGDPSPDGRGTLVTARGIEIGHIFQLGRKYTDAFEVDALGPDSKPIRITMG 455

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RVVAA+ E  HD  G++WP SVAP  +  + I   D    +  E++ A+L++ 
Sbjct: 456 SYGIGVSRVVAAIAEQHHDELGLVWPRSVAPADVH-VVIAGKDDAVTEGGERLAAQLAER 514

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  DD     G +FA A+L+G P  V+VG + ++   VE+K R TG R +++++  +
Sbjct: 515 GVRVLLDDRKATPGVKFADAELIGVPTIVVVG-RGLAKGVVEVKDRATGERTEVAVDSAV 573

Query: 436 NYASHRFS 443
            +     S
Sbjct: 574 GHLVDLVS 581


>gi|218530550|ref|YP_002421366.1| threonyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
 gi|218522853|gb|ACK83438.1| threonyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
          Length = 675

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 141/443 (31%), Gaps = 40/443 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      ++ L      +   G+  W   G      + A +R    +  
Sbjct: 232 YLHRLEEAERRDHRRLGKEMDLF--HFQEEGPGVVFWHAKGWTIFQELIAYMRRRL-KGD 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG +  Y + M       +     +     P +      IF+ 
Sbjct: 289 YAEVNAPQILDKSLWETSGHWGWYRENMFAAQSAGEEAEDKRWFALKPMNCPGHVQIFKH 348

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + +         
Sbjct: 349 GLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIFCTEDQLAAECLKIN-D 407

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L  +   G   I ++    P     S      A+   TQV             E    
Sbjct: 408 LILSTYADFGFDQILVKLSMRPEKRVGSDALWDHAEAVMTQVL---------AQIEEQSG 458

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             I +  ++     A Y    +     L D++  + +     ++    F    ++     
Sbjct: 459 GRIKT--AVNPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVD----FNLPERFD---- 505

Query: 300 ATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A++      K   V +     G+M     ++     G   +W   V     ++       
Sbjct: 506 ASYIDADSQKKPPVMIHRAICGSMERFTGILIEHFAGHFPLWLAPVQVVVATIT------ 559

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   L + G  V  D   E+I  +     L   P+ + +G +   +  V +
Sbjct: 560 SDADPYAREVVRVLERAGLRVEADLRNEKINYKVREHSLAKVPVLLALGRREAEERTVSV 619

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +     M+L+  +      
Sbjct: 620 RRMGSQKTTTMALDAALAAFIEE 642


>gi|329724323|gb|EGG60835.1| proline--tRNA ligase [Staphylococcus epidermidis VCU144]
          Length = 567

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 191/366 (52%), Gaps = 6/366 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWSAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REFLMKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKYRDEKRPRFGLLRGREFLMKDAYSFHSDEASLDATYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +    +  D+    E  +  
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVY-SNESDYAANIEKAEVV 239

Query: 241 DIISLNSIV----EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              S          +   P   T+    E L   L E  +     I+   I +    +  
Sbjct: 240 YHPSHKHSALAELTKVETPNVKTAQEVAEYLERPLDEIVKTMIFKIDGEFIMFLVRGHHE 299

Query: 297 PMSATFKGADGKDHYVQMGS-YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                 K   G +H         +  +      +    D    I+ D+      + +   
Sbjct: 300 LNEVKLKSYFGTEHVEMATPDEIVNLVDANPGSLGPIFDKDIKIYADNYLQDLNNFVVGA 359

Query: 356 AHDQVC 361
             D   
Sbjct: 360 NEDHYH 365



 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 99/166 (59%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GIIW
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQNNDENGIIW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF I LI I       R   +++Y +L     DV +DD  E+ G +F  +DL+G 
Sbjct: 464 PKSVTPFDIHLITINPKKDDQRTLGDQLYQKLMDS-YDVLYDDRKERAGVKFNDSDLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           P++V+VG +   +  VE+K R+ G+ E++ ++E+  Y    F N +
Sbjct: 523 PVRVVVGKR-AEEGIVEVKQRINGLSEEVQIDELEYYLQDLFKNIK 567


>gi|325068893|ref|ZP_08127566.1| threonine--tRNA ligase [Actinomyces oris K20]
          Length = 683

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/456 (15%), Positives = 139/456 (30%), Gaps = 45/456 (9%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L +   RD      +L L +    +   G+  + P G      +   + +    
Sbjct: 246 KAYQTRLAEAAKRDHRKLGAELDLYS-FPEEIGPGLVVFHPKGAMLRHQIEQYVVDRHQD 304

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHE 111
            G   +  P +    L+  SG    Y   M                 +  +       + 
Sbjct: 305 YGFDFVHTPEISKGGLFHTSGHLPYYADTMFPPMLADEERDAEGNITKAGQEYYLKAMNC 364

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +  
Sbjct: 365 PMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFTQDDSHTYCTPEQAG 424

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           +         +L I    GL    +   +    G    +FI            S      
Sbjct: 425 EE-IRAQIDFFLSILKAFGLTDFYLELSTRDEDGAKKDKFI-----------GSDADWAA 472

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +     D             A Y       + ++ D++    ++S    +       
Sbjct: 473 ATQALQDACDASGLEVVPDPGGAAFYGPKV---SVQVKDAIGRTWQMSTIQYDFNQP--- 526

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
                      +  ADG       + S  +G++     V+    +     +P  ++P ++
Sbjct: 527 -----ERFDLEYTAADGTHQRPIMIHSAKLGSVERFIGVLT---EHYAGAFPAWLSPVQV 578

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            LI +    +      + + A+L   G  V  D   ++ G +   A     P  +I G +
Sbjct: 579 RLIPVA---EAFDAYVDDVAAQLRAQGVRVEVDHSDDRFGKKIRNASKDKIPFTLIAGGE 635

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
                 V  + R       + ++E + +        
Sbjct: 636 DAEAGAVSFRFRDGQQTNGVPVKEAVAHIVSVIDAR 671


>gi|195387892|ref|XP_002052626.1| GJ17652 [Drosophila virilis]
 gi|194149083|gb|EDW64781.1| GJ17652 [Drosophila virilis]
          Length = 745

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 75/432 (17%), Positives = 149/432 (34%), Gaps = 40/432 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +  +IR E  + G  E+ 
Sbjct: 340 EEAAKRDHRKIGREQELF--FFHELSPGSCFFQPRGAHIYNTLMNLIRGEYRKRGFQEVI 397

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW+ SG +  Y   M       +K     P +      IF +  +S+R LP 
Sbjct: 398 SPNIYNAKLWMTSGHWQHYADNMFSFEAEKEK-FALKPMNCPGHCLIFDNRNRSWRELPL 456

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +               ++   G
Sbjct: 457 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAPEQIKSEM-KGCLDFLRHVYTIFG 515

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F ++  T   +     +  D    +     ++        
Sbjct: 516 FS------------------FQLVLSTRPDKYLGELEQWDAAEKALAESLNEFGMPWKEN 557

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    +++L   A       K 
Sbjct: 558 PGDGAFYGPKIDI---TIMDALKRPFQCATIQLD----FQLPIRFNLNYIA---DDGEKK 607

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +     WP  ++P ++ ++ +        +  + + 
Sbjct: 608 RPVIIHRAILGSVERMIAILT---ENYAGKWPFWLSPRQVMVVPVGP---AYDEYAKSVR 661

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R   +  +
Sbjct: 662 DQLYAAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGE 721

Query: 429 MSLEEVINYASH 440
           +S+ E+I     
Sbjct: 722 VSVAELITKLQK 733


>gi|195114918|ref|XP_002002014.1| GI17149 [Drosophila mojavensis]
 gi|193912589|gb|EDW11456.1| GI17149 [Drosophila mojavensis]
          Length = 691

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 148/432 (34%), Gaps = 40/432 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +  +IR E  + G  E+ 
Sbjct: 286 EEAAKRDHRKIGREQELF--FFHELSPGSCFFQPRGAHIYNTLMNLIRGEYRKRGFQEVI 343

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW+ SG +  Y   M       +K     P +      IF +  +S+R LP 
Sbjct: 344 SPNIYNAKLWMTSGHWQHYADNMFSFEAEKEK-FALKPMNCPGHCLIFDNRNRSWRELPL 402

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +               ++   G
Sbjct: 403 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAPEQIKSEM-KGCLDFLRHVYTIFG 461

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F ++  T   +     D  D    +     ++        
Sbjct: 462 FS------------------FQLVLSTRPDKYLGELDQWDAAEKALAESLNEFGMPWKEN 503

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    +++L   A       K 
Sbjct: 504 PGDGAFYGPKIDI---TIMDALKRPFQCATIQLD----FQLPIRFNLNYIA---DDGEKR 553

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +     WP  ++P ++ ++ +        +  + + 
Sbjct: 554 RPVIIHRAILGSVERMIAILT---ENYAGKWPFWLSPRQVMVVPVGP---AYDEYAKTVR 607

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             L   G     D D G+ +  +   A L  F   ++VG K  S   V ++ R   +  +
Sbjct: 608 DELYAAGFMSEVDCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSKTVNVRTRDNKVHGE 667

Query: 429 MSLEEVINYASH 440
           +S+ E+I+    
Sbjct: 668 VSVAELISKLQK 679


>gi|111115550|ref|YP_710168.1| threonyl-tRNA synthetase [Borrelia afzelii PKo]
 gi|216263396|ref|ZP_03435391.1| threonyl-tRNA synthetase [Borrelia afzelii ACA-1]
 gi|122956324|sp|Q0SMD6|SYT_BORAP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110890824|gb|ABH01992.1| threonyl-tRNA synthetase [Borrelia afzelii PKo]
 gi|215980240|gb|EEC21061.1| threonyl-tRNA synthetase [Borrelia afzelii ACA-1]
          Length = 581

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 150/443 (33%), Gaps = 37/443 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L + +E   RD      +L L +    +   G+  + P G K    +    REE ++
Sbjct: 172 RSYLNLREEIKKRDHRKLGKELDLFSIH-EEIGPGLVFFHPNGAKIRALIEDFWREEHSK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y   M    + +       P +      I+ +   
Sbjct: 231 NGYDILFTPHIGKSWLWQTSGHLDFYKDSMFEKMEMDKSDYYLKPMNCPFHIAIYNTGKH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G+MR+R F   DA+      +       ++    +
Sbjct: 291 SYRDLPFRWAELGTVYRYEKIGALHGIMRARGFTQDDAHIICTHSQVLDE-IKEVLRFAI 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G  S+     + P                  +   +    +  +          
Sbjct: 350 YMWSKFGFNSLKAYLSTKP-----------------DKFVGNDSDWEMSLKVLEEALSGF 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I +   A Y    D+   K+ DSL    ++S    +    F    ++++  +A  
Sbjct: 393 EVPYEIDKGGGAFYGPKIDL---KIVDSLEREWQMSTIQFD----FNLPERFNMTYTAE- 444

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +     +    +G++     ++   + G   +W             I   +    
Sbjct: 445 --DGKEKRPFMIHRALLGSIERFFGILIEHYGGAFPLW------LSPIQAVIIPVNNAVE 496

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K++ +    G  +  D+   ++ ++         P   I+G +   + K+ I+ R 
Sbjct: 497 DYAIKVFNKFKNEGMRIKLDNTSSRMNAKIREYQAKKIPYMFIIGEREAKEEKISIRTRT 556

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 + L+E +     +  + 
Sbjct: 557 NEQINGLELDEALKLILLKIRDK 579


>gi|182419388|ref|ZP_02950640.1| threonyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237666667|ref|ZP_04526652.1| threonine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376719|gb|EDT74291.1| threonyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237657866|gb|EEP55421.1| threonine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 643

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 154/445 (34%), Gaps = 35/445 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           ++   + +   RD      +L L T    +  +G+   +P G K +  +   + +E+ + 
Sbjct: 228 EFLEALEEAKKRDHNKLGRELKLFTT-DEKVGQGLPLLMPKGAKIVQTLQRWVEDEEEKR 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G +    P +  +DL+  SG +D Y   M      +++D+     P        I+ +  
Sbjct: 287 GYVLTKTPLMAKSDLYKVSGHWDHYKDGMFVLGDEEKDDEVFALRPMTCPFQYTIYNAEQ 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  + +    FR+E      G++R R+F         +TPE  +  +  +    
Sbjct: 347 HSYRDLPIRYAETSTLFRNEASGEMHGLIRVRQFT-LADGHLIVTPEQLEEEFKGVVELI 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +   LG            I   +++ F         +     D  +    +     D 
Sbjct: 406 QYLMETLG------------IAEKITYRFSKWDPNNTEKYINDPDAWNHTQDTMRNILDH 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       +   A Y    D+    +     +   +    I+           +     T
Sbjct: 454 LKINYVEADDEAAFYGPKLDLQFRNVH---GKEDTLFTVQIDFAL--------AERFDMT 502

Query: 302 FKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +G+     +     IG      A++    +     +P  ++P +  ++ +      
Sbjct: 503 YIDKNGEKKRPYIIHRSSIGCYERTLAMLI---EEYAGAFPTWLSPVQAKILPLSDK--- 556

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  EK+   L   G  V  D   E+IG +   A L   P  ++VG K   +++V ++ 
Sbjct: 557 YNDYAEKVTKALKDKGIRVETDYRAEKIGYKIREARLERTPYILVVGEKEAENNQVSVRS 616

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       M L   ++      +N 
Sbjct: 617 RKNDDEGAMDLNAFVDRIVSEVANK 641


>gi|145295898|ref|YP_001138719.1| prolyl-tRNA synthetase [Corynebacterium glutamicum R]
 gi|166980117|sp|A4QF01|SYP_CORGB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|140845818|dbj|BAF54817.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 588

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 109/282 (38%), Positives = 155/282 (54%), Gaps = 5/282 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + GIYSWLPLG +A+ N+ A++REE 
Sbjct: 4   RLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRVAPGIYSWLPLGLRAVRNIEAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DAIGGQELLFPALLPREPYETTQRWTEYGDSLFRLKDRKGADYLLGPTHEEMFAATVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF+MKD+YSFD++  G   SY K   +Y
Sbjct: 124 YNSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFVMKDSYSFDMSDAGLDESYAKHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL+    +A SG +GG  S EF+ +++ GE   F      ++    E      
Sbjct: 184 QRIFDRLGLEYAICQATSGAMGGSASEEFLAVSENGE-DTFVRSTSGNYAANVEAVVTQ- 241

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
              +   +E    P A T +    +  D+L +        IE
Sbjct: 242 -PGVERDIEGL--PEAVTYETPVSETIDALVDWANSIDVQIE 280



 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 6/192 (3%)

Query: 258 ATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +    K  D  P  E     ARGIE+GHIF  G KY+          +GK     MG
Sbjct: 399 GFIEAAEIKEGDPAPAGEGTLTLARGIEIGHIFQLGRKYTEAFDVQILDENGKRAIPTMG 458

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R++A + E  HD  G+ W   VAP+++ ++     D    +A E+  A LS  
Sbjct: 459 SYGLGVTRLLAVLAEQRHDDAGLNWSVEVAPYQVHVVAAN-KDAAAIEAAERFAAELSAA 517

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G DV +DD      G +F  A+LLG P  +I+G +  ++ KVE++ R  G + ++  ++ 
Sbjct: 518 GLDVLFDDRPKVSPGVKFKDAELLGMPFALILG-RGYAEGKVELRVRG-GEKSELDADQA 575

Query: 435 INYASHRFSNNR 446
           +       +  R
Sbjct: 576 VAQIVEMVAQAR 587


>gi|206603264|gb|EDZ39744.1| Threonyl-tRNA synthetase [Leptospirillum sp. Group II '5-way CG']
          Length = 617

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 147/438 (33%), Gaps = 42/438 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L   +E  R D      +L L   +  +   G+  WLP G +    +  + +   +R G
Sbjct: 203 YLRQQEEVQRRDHRKLGRELGLFRTLDEK-GAGLVLWLPKGSQIRRTLEELWKILHDRHG 261

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +   DLW++SG +D Y   M R  +    A    P +      IFR  ++SY
Sbjct: 262 YRYVYTPHIARLDLWMQSGHWDYYQDSMFRPMETEGTAYELKPMNCPFHILIFRESVQSY 321

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++   +R E      G+MR R F   DA+ F    + +      +     ++
Sbjct: 322 RDLPIRLSELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCKPEDLAGE-IRNVLALVDQM 380

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             R G     +   + P     S E                   +    S     ++   
Sbjct: 381 IGRFGFTDRTVYLSTRPEKSVGSDE-----------------NWEMATGSLRKALEESGI 423

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +       Y    D+   K  D++    ++S   ++    F    K+      T++ 
Sbjct: 424 PYEVDPGEGVFYGPKIDI---KFHDAIGRAWQLSTIQVD----FNLPEKFD----LTYRN 472

Query: 305 ADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             G+     M    +     R    +IE       +                        
Sbjct: 473 DSGEPCRPIMIHRALFGSIERFFGILIEHYAGAFPLWLAPEQVRIMTIA-------DRHI 525

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              + + +RL   G     D   E+IG +   A +   P   +VG + V +++V ++ R 
Sbjct: 526 PYAQTVLSRLKDRGVRAEGDFRNEKIGFKVREAQMEKIPEMWVVGDREVEETRVSVRSRE 585

Query: 423 TGIREDMSLE-EVINYAS 439
              ++   LE E+ +   
Sbjct: 586 GEKKDLCPLESELEDLFR 603


>gi|268532388|ref|XP_002631322.1| C. briggsae CBR-TRS-1 protein [Caenorhabditis briggsae]
          Length = 704

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 147/433 (33%), Gaps = 43/433 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     HQ S G   W P G    + +   IR++  R G  E+ 
Sbjct: 295 EEAAKRDHRKLGKEQDLF--FFHQLSPGSAFWYPKGAHIYNKLVDFIRKQYRRRGFTEVI 352

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +  LW  SG +  Y ++M +  +   +     P +      +F     +Y  LPF
Sbjct: 353 TPNMYNKKLWETSGHWQHYSEDMFK-IEVEKEEFGLKPMNCPGHCLMFGHMPHTYNELPF 411

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F    +  R+E+     G+ R R F   DA+ F    + S+    +        + ++ 
Sbjct: 412 RFADFGVLHRNEMSGALTGLTRVRRFQQDDAHIFCRQDQISEE-IKQCLDFLEYAYEKVF 470

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P G     E                   D          +      ++ 
Sbjct: 471 GFTFKLNLSTRPEGFLGKIE-----------------TWDQAEADLTEALNATGRKWALN 513

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L  N + +   ++    F    ++      ++    G+ 
Sbjct: 514 PGDGAFYGPKIDI---TIQDALKRNFQCATIQLD----FQLPNQFD----LSYFDEKGEK 562

Query: 310 HYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               M    +     R+ A + ES                           +  RD  + 
Sbjct: 563 QRPVMIHRAVLGSVERMTAILTESYGGKWPFWLSPRQCKIITV-------HESVRDYAKD 615

Query: 368 IYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +  ++   G +V +D+  G+ +  Q   + L  F   +++G+K   +  V ++ R   +R
Sbjct: 616 VKKQIFDAGFEVEYDEFCGDTMNKQVRNSQLAQFNFILVLGAKEKENGTVNVRTRDNAVR 675

Query: 427 EDMSLEEVINYAS 439
            ++ +E++++   
Sbjct: 676 GEVPIEKLLSKFR 688


>gi|331701570|ref|YP_004398529.1| threonyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
 gi|329128913|gb|AEB73466.1| threonyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
          Length = 648

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 162/441 (36%), Gaps = 36/441 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
              + + RD  +  ++L L    +  +   G+  W+P G      +   I +++   G  
Sbjct: 235 KRKEAHERDHRVIGNELDLF--FVDPKVGAGLPYWMPNGATIRRTIERYIVDKEVANGYQ 292

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYR 126
            +  P L + DL+ +SG +D Y ++M    D  D + +   P +      I+  HI+SYR
Sbjct: 293 HVYTPVLANLDLYKQSGHWDHYREDMFPPMDMGDGEELELRPMNCPSHIQIYNHHIRSYR 352

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    ++ +  R E      G+ R RE  + D ++F    +  +  +  +    + ++
Sbjct: 353 ELPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVALDQIQEE-FKNILNLMVEVY 411

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF-PIPSENTDFDDIIS 244
           H   +     R                  D   T+ +   D M            D++  
Sbjct: 412 HDFDINDYTFRLS--------------YRDPKNTEKYFDDDEMWTRAQTMLKGAMDEMGL 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV  +    +L   + +S   ++    F    ++ L     + G
Sbjct: 458 DYVEAEGEAAFYGPKLDVQTKT---ALGNEETLSTIQLD----FMLPERFDLH----YIG 506

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGK H   M     G +  +   +    +     +P  +AP ++ +I +        D 
Sbjct: 507 EDGKQHRPVMIHR--GLVSTMERFVAYLTEIYKGAFPTWLAPHQVKIIPV--SQDKHLDY 562

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +KI  +L  +      D   E++G     A     P  ++VG + VS + V ++     
Sbjct: 563 AKKINDQLRALKIRSSVDTRAEKMGYLIRDAQTHKIPYTLVVGDEEVSGNSVSVRKYGEQ 622

Query: 425 IREDMSLEEVINYASHRFSNN 445
             +  S+ + I+  S   ++ 
Sbjct: 623 DTQSESVPDFIDEVSKDIASY 643


>gi|256824985|ref|YP_003148945.1| prolyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
 gi|256688378|gb|ACV06180.1| prolyl-tRNA synthetase, family II [Kytococcus sedentarius DSM
           20547]
          Length = 596

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 103/269 (38%), Positives = 151/269 (56%), Gaps = 3/269 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  FL  L+E+P DAE+  H+L++R G + + + GIY+WLPLG K ++ V  I+REE
Sbjct: 3   MRMSTLFLRTLREDPTDAELPGHRLLVRAGYVRRVAPGIYTWLPLGLKVMEKVKGIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E++ P+L   + +  S R+  YG ++ RL DR    M+ GPTHEE+ T   + 
Sbjct: 63  MEAIGDQEIAFPSLLPREPYEASNRWTEYGDDLFRLTDRKGADMLLGPTHEEMFTLAVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP   +QI  K+RDELRPR GV+R REF MKDAYSFD+   G + +Y +   +
Sbjct: 123 LYTSYKDLPLGLFQILPKYRDELRPRAGVLRGREFTMKDAYSFDVDEAGLEAAYQRHRKA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y R+F RLG + + + A+SG +GG  S EF+ + D+GE      +    +    E     
Sbjct: 183 YTRVFDRLGFEYVAVHADSGAMGGSASEEFLAVMDSGEDTFVRDESG--YAANVEAVQMP 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            +       E+ TA +      H E   D
Sbjct: 241 VVPVPTDEAER-TALWGHLPAAHVEDTPD 268



 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
               +TA     +    E             ARG+E+GHIF  GTKY+  +       +G
Sbjct: 400 HGRDFTADGTIHAASIREGDPSPTGAGPLRLARGVEMGHIFQLGTKYAEALGLKVLDQNG 459

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K   VQMGSYGIG  R V  V E+ HD  G++WP  ++P  + ++     D    +  E+
Sbjct: 460 KLVTVQMGSYGIGITRAVGVVAETHHDEIGLVWPRELSPADVHVVATG-KDAAVLEKAEE 518

Query: 368 IYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           + A L + G  V  DD      G +F  A+L+G P  ++VG K +++ +VEIK R  G
Sbjct: 519 LTAALEQQGLTVLLDDRPKVSPGVKFKDAELIGVPTILVVG-KGLAEGEVEIKDRAAG 575


>gi|220912797|ref|YP_002488106.1| threonyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
 gi|254783507|sp|B8H9E8|SYT_ARTCA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219859675|gb|ACL40017.1| threonyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
          Length = 669

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 63/450 (14%), Positives = 124/450 (27%), Gaps = 47/450 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L +    +   G+  + P G      +    R+     G   
Sbjct: 252 RIAEAERRDHRKLGSELDLFS-FPDELGSGLPVFHPKGGIIRKEMEDYSRQRHVEAGYEF 310

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTD 116
           +  P +    L+  SG  D Y + M                 +  +     P +  +   
Sbjct: 311 VYTPHITKGHLYEVSGHLDWYKEGMFPAMHVDAELNEDGTVRKPGQDYYLKPMNCPMHNL 370

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP   ++    +R E      G+ R R     DA+ +    +  +    
Sbjct: 371 IFRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYCTREQMKEELTK 430

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                 L +    GL    +   +                    +        +    + 
Sbjct: 431 -TLTFVLDLLKDYGLNDFYLELST----------------KDPEKYVGEDAAWEEATRTL 473

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                +            A Y       + +  D+L    ++S   ++    F    ++ 
Sbjct: 474 AEVAQESGLELVPDPGGAAFYGPKI---SVQAKDALGRTWQMSTIQLD----FNLPERFE 526

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
           L   A       +   V +     G++     V+   + G    W   V    I +    
Sbjct: 527 LEFQAA---DGSRQRPVMIHRALFGSVERFMGVLTEHYAGAFPAWLAPVQVVGIPVA--- 580

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   +    +  +L   G     D   ++   +   A     P  +I G        
Sbjct: 581 ---ETFNEYMFDVVDQLKAAGIRAEVDTSSDRFPKKIRTASKDKIPFVLIAGGDDAEAGA 637

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  + R       + + E +   +    N 
Sbjct: 638 VSFRFRDGSQDNGVPVAEAVKRITEAVRNR 667


>gi|315604524|ref|ZP_07879587.1| proline--tRNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313536|gb|EFU61590.1| proline--tRNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 602

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 101/239 (42%), Positives = 141/239 (58%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +FL  L+E+P DAE+ SHKL++R G I + + GIY+WLPLG + L  +  I+REE +
Sbjct: 5   LSTFFLRTLREDPADAEVNSHKLLVRAGYIRRTAPGIYTWLPLGLRTLRKIEDIVREEMD 64

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L  A+ +  + R++ YG  + +L DR     +  PTHEE+ T + +   
Sbjct: 65  AMGAQEVHFPGLIPAEPYKATNRWEEYGPTLFKLEDRKGGDYLLAPTHEEMFTLLVKDMF 124

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFD+T  G   SY     +Y 
Sbjct: 125 SSYKDLPTTLYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDVTEVGLDASYQAERDTYE 184

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           RIF RLGL+ + + A SG +GG  S EF+  +  GE     S         +  T   D
Sbjct: 185 RIFTRLGLRYVIVSAMSGAMGGSRSEEFLHPSPIGEDTFVASPGGYAANAEAVTTVAPD 243



 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 89/187 (47%), Gaps = 5/187 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+        RGIE+GHIF  G KY+  +  T     GK   V MG
Sbjct: 410 GTIEAAEVREGDPAPDGSGPLHLERGIEIGHIFQLGRKYAQALGLTVLDECGKTQVVTMG 469

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+AA+ E++ D +G+ WP  +APF + ++      +        +   L   
Sbjct: 470 SYGIGVTRVMAALAEANCDERGLSWPAQIAPFDVHVLATGKG-EEVFATAASLGDELDVA 528

Query: 376 GCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G DV  DD      G +F   +L+G P  ++VG + ++D KVEI+ R TG    + +EE 
Sbjct: 529 GLDVLVDDRRKVSAGVKFKDFELVGIPFGLVVG-RSLADGKVEIRVRATGETIVVPVEEA 587

Query: 435 INYASHR 441
                  
Sbjct: 588 AARLREL 594


>gi|86741833|ref|YP_482233.1| threonyl-tRNA synthetase [Frankia sp. CcI3]
 gi|86568695|gb|ABD12504.1| Ser-tRNA(Thr) hydrolase [Frankia sp. CcI3]
          Length = 701

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 70/448 (15%), Positives = 141/448 (31%), Gaps = 39/448 (8%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L +   RD      +L L +    +   G+  + P G      +    R     
Sbjct: 289 KAYQTRLAEAEKRDHRKLGAELDLFS-FPTEIGPGLAVFHPRGGAIRTAMEDYSRRRHIE 347

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHI 122
            G   ++ P +  ++L+  SG  D + + M               P +  +   IFRS  
Sbjct: 348 AGYSFVNTPHITKSELYQISGHLDWFAEGMYPPMQLDGGTDYYLKPMNCPMHILIFRSRG 407

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP   ++    +R E      G+ R R     DA+ F    +      + +    
Sbjct: 408 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDAHLFCAREQLPTEL-DSVLTFV 466

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L +    GL    +   + P G                +   + +               
Sbjct: 467 LGLLRDFGLTDFYLELSTRPAG----------------KAVGTDEEWAQATELLREAAQK 510

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +     A Y       + +  D++    ++S   ++    F    ++       
Sbjct: 511 QDLELVMDPGGGAFYGPKI---SVQARDAIGRTWQLSTIQVD----FQLPRRF----GLE 559

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           ++ ADG +     +     G +    A++    +      P  +AP ++  I I      
Sbjct: 560 YQAADGTRQRPFMIHRALFGTIERFFAILL---EHYAGALPPWLAPVQVVGIPIT---DE 613

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  RL+  G  V  D   +++  +   A     P  ++ G   V+   V  + 
Sbjct: 614 HVPYLDEVARRLAAHGLRVEVDSSDDRMQKKIRTAQKQKVPFMLLAGDSDVAQGAVSFRF 673

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPV 448
           R    R  + ++E +          R V
Sbjct: 674 RDGTQRNGVPVDEAVAEILDAVERRRQV 701


>gi|302550176|ref|ZP_07302518.1| threonyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302467794|gb|EFL30887.1| threonyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 658

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 72/440 (16%), Positives = 134/440 (30%), Gaps = 38/440 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    Q   G+  + P G      +    R      G   +  
Sbjct: 254 EAEKRDHRKLGSELDLFSV-PEQIGSGLAVFHPKGGIIRRVMEDYSRRRHEEEGYEFVYT 312

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+  SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 313 PHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 372

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R+R F   DA+ +    + ++   +K     L +    G
Sbjct: 373 RLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTREQMAEEL-DKTLTFVLGLLRDYG 431

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +                    +   S +  +    +     +         
Sbjct: 432 LTDFYLELST----------------KDPEKFVGSDEAWEEATETLRQVAEKQGLPLVPD 475

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++    F    ++       + GADG  
Sbjct: 476 PGGAAFYGPKI---SVQTKDAIGRTWQMSTIQLD----FNLPERFD----LEYTGADGAK 524

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +     G++    AV+    +     +P  +AP +   I I        +  EK 
Sbjct: 525 QRPVMIHRALFGSIERFFAVLL---EHYAGAFPAWLAPVQAVGIPIG---DAHVEYLEKF 578

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A   + G  V  D   +++  +   A     P  VI G + +S   V  ++R       
Sbjct: 579 AAAAKRKGLRVEVDSSSDRMQKKIRNAQKQKVPFMVIAGDEDMSHGSVSFRYRDGSQENG 638

Query: 429 MSLEEVINYASHRFSNNRPV 448
           +  +E I            V
Sbjct: 639 IPFDEAIAKIQKVVEERAQV 658


>gi|123968188|ref|YP_001009046.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
 gi|166225480|sp|A2BQ78|SYT_PROMS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123198298|gb|ABM69939.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
          Length = 638

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 136/442 (30%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      K  L    I + S G+  W P G      +   IRE   +  
Sbjct: 231 YLTRIEEAEKRDHRKLGKKHSLF--HIQEESPGMIFWHPNGWTIYQVLEKYIREILKKND 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P      LW +SG ++ +  +M       ++     P +      IF   +KSY
Sbjct: 289 YLEIKTPQAVDKSLWEKSGHWEKFRDDMFT-TASENRTYAIKPMNCPCHIQIFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +     R+E      G+MR R F   DA+ F  T E  +   +        +
Sbjct: 348 KDLPIRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIFC-TEEQIQEEVSTFIDLVFEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P                      S+D  D    +     D+   
Sbjct: 407 YKTFGFDEIIIKLSTRPEKR-----------------VGSEDIWDKSEEALTKALDNKNL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++                AT+  
Sbjct: 450 KWELQPGEGAFYGPKIEF---SLKDCLNRVWQCGTIQVDFSMPIRLD--------ATYVD 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +      +    +G+      ++   ++ K  IW        +S+           +
Sbjct: 499 IDNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIWLAPYQIILLSIT------DRNIE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C K    ++  G     D   E+IG +   A L   PL  ++G K      V ++    
Sbjct: 553 KCLKFNELINNNGYRSKVDIRNEKIGYKIREATLGRVPLIAVIGDKEEEIDSVALRALNG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                 +L  +           
Sbjct: 613 KNLGIFNLPNLFKLMDELIEKK 634


>gi|255071699|ref|XP_002499524.1| predicted protein [Micromonas sp. RCC299]
 gi|226514786|gb|ACO60782.1| predicted protein [Micromonas sp. RCC299]
          Length = 613

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 143/429 (33%), Gaps = 36/429 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD       L L +        G+  W P G    D +    ++     G   +  
Sbjct: 210 EAARRDHRKVGKDLNLFSIQQEDVGGGLVFWHPKGALMRDMIERFWKDIHLERGYDLLYT 269

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +   DLW  SG  D Y + M R  D  D+     P +      +++    SYR+LP  
Sbjct: 270 PHVGKLDLWKTSGHADFYSENMYRPIDVEDETYQLKPMNCPFHVAVYKDGYFSYRDLPIR 329

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           + ++   +R E      G+ R R F   DA+ F L  + +           L +   +  
Sbjct: 330 WAEMGTVYRYERSGTMHGLFRVRGFTQDDAHIFCLPDQIADE-----IKGVLDLTEDILS 384

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                             EF V   T   +     +  D    +             + E
Sbjct: 385 TF-------------GFKEFEVNLSTQPEKSVGGPEIWDKAEGALKDALAQKGWDYEVDE 431

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+   K+ D++    + S   ++    F    ++ L   A     + K  
Sbjct: 432 GGGAFYGPKIDI---KILDAIGRKWQCSTVQLD----FNLPERFDL---AYIDKENVKQR 481

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + +     G++     ++    +     +P  +AP ++ L+ +        D  ++   
Sbjct: 482 PIMIHRAIFGSLERFFGILT---ENYAGAFPLWIAPTQVRLLPVT---DAVDDYVQETAR 535

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G         E++      A+    P+  +VG +   D  + ++    G +  +S
Sbjct: 536 KLRAAGIRCDV-QSQERLAKLVRNAEKAKIPVMCVVGEQEAKDGTLAVRTYADGDQGVLS 594

Query: 431 LEEVINYAS 439
           +++V+   S
Sbjct: 595 VDDVVARIS 603


>gi|289426352|ref|ZP_06428095.1| proline--tRNA ligase [Propionibacterium acnes SK187]
 gi|289153080|gb|EFD01798.1| proline--tRNA ligase [Propionibacterium acnes SK187]
          Length = 585

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 107/272 (39%), Positives = 156/272 (57%), Gaps = 6/272 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE 
Sbjct: 4   RMSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +  
Sbjct: 64  ASIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y
Sbjct: 124 YSSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D
Sbjct: 184 IRIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRVAVPD 243

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            + ++        P A   D  + +  +SL  
Sbjct: 244 PLPID------GLPEAEVVDTPDARTIESLVR 269



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              DV   +  D  P+   +   ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 399 GVIDVAEIREGDPAPDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMG 458

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ 
Sbjct: 459 SYGLGVSRAVAAIAEGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEA 517

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 518 GLEVLLDDRKASPGVKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 576

Query: 436 NYASHRFS 443
                   
Sbjct: 577 CAVLKEVR 584


>gi|296129629|ref|YP_003636879.1| threonyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
 gi|296021444|gb|ADG74680.1| threonyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
          Length = 670

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 67/457 (14%), Positives = 133/457 (29%), Gaps = 49/457 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD     ++L L +    +   G+  + P G      +    R    + G
Sbjct: 249 YLERIAEAERRDHRKLGNELDLFS-FPEEIGSGLAVFHPKGGIIRMEMEEYSRRRHVQAG 307

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              ++ P +    L+  SG  D Y   M                 R  +     P +  +
Sbjct: 308 YSFVNSPHITKEQLFQISGHLDWYADGMYPPMQLDEERDAEGHVKRQGQNYYLKPMNCPM 367

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF +  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +    
Sbjct: 368 HNLIFAARGRSYRELPLRLFEFGTVYRYEKSGVVHGMTRARGFTQDDAHIYCTREQMKDE 427

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    L +    GL    +   +                        S D  D   
Sbjct: 428 L-TSLLTFVLDLLKDYGLDDFYLELSTRNPEKS----------------VGSDDVWDEAT 470

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +     +             A Y       + +  D++    ++S   ++    F    
Sbjct: 471 ETLREVAEASGLELVPDPGGAAFYGPKI---SVQAKDAIGRTWQMSTIQLD----FNLPE 523

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       +   DG       +     G++    AV+   + G    W   V    + +
Sbjct: 524 RF----ELEYTAPDGTRQRPVMIHRALFGSIERFFAVLTEHYAGAFPAWLAPVQVLAVPV 579

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                  +      +++  RL   G     D   ++ G +   A     P  +I G +  
Sbjct: 580 A------EPFEPYLQQVVDRLRAQGVRAEVDRSDDRFGKKIRNASTQKIPFVLIAGGEDA 633

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
               V  ++R       + ++E +        +   V
Sbjct: 634 DAGAVSFRYRDGRQDNGVPVDEAVERIVAAVRDRVQV 670


>gi|188994826|ref|YP_001929078.1| threonyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
 gi|238691475|sp|B2RJD6|SYT_PORG3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188594506|dbj|BAG33481.1| threonyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
          Length = 653

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 69/436 (15%), Positives = 142/436 (32%), Gaps = 36/436 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L          G+  WLP G +    +   +++ Q   G  ++  P
Sbjct: 239 AKKRDHRKIGKELELFA-FSQNVGAGLPLWLPRGTQLRLRLEDFLKQIQKHFGYQQVITP 297

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            + + +L++ SG Y  YG++  R     +  +  +  P +     +IF+    SYR+LP 
Sbjct: 298 HIGNKNLYITSGHYAKYGQDSFRPINTPQEGEEFMLKPMNCPHHCEIFKITPHSYRDLPI 357

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +    +R E      G+ R R F   DA+ F    +  +     M + ++       
Sbjct: 358 RLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFCRPDQLKEEFCKVMDIIFIIFKALDF 417

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                  +    +  +              +   S++  +    +     ++      I 
Sbjct: 418 KNFEAQISLRDKVNRE--------------KYIGSEENWERAERAIIEACEEKGLPAVIE 463

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D     + D+L    ++    ++                  + G D K 
Sbjct: 464 YGEAAFYGPKLDFM---VKDALGRRWQLGTIQVDYNLP--------ERFDLEYTGEDNKK 512

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H    +     G+M    AV+     GK  +W           + +    +   +   ++
Sbjct: 513 HRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVVVLPVSERFNEYAHRV 566

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L++    V  DD  E++G +    +L   P  +IVG     + +V ++ +  G    
Sbjct: 567 AKELNQRDIRVQVDDRNEKVGRKIRDNELKRIPYMLIVGENESREEEVSVRKQGEGDMGI 626

Query: 429 MSLEEVINYASHRFSN 444
           M +            +
Sbjct: 627 MKITTFAELIEKEVDD 642


>gi|291060195|gb|ADD72930.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 582

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 140/442 (31%), Gaps = 38/442 (8%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +  E  R D       L L    + + + G   W P G      +   +R   +  G
Sbjct: 172 YLRMQDEAKRRDHRKLGPALGLF--HLDEENPGQVFWHPEGWTLYVAIQQYLRRVMHEDG 229

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG +D Y   M  L +   ++    P +     +IF+   +SY
Sbjct: 230 YAEVHTPFVMPQSLWERSGHWDKYRANM-YLTEGEKRSFALKPMNCPGHVEIFKQKTRSY 288

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      GVMR R F+  DA+ F    + +              
Sbjct: 289 RDLPLRLSEFGSCTRNEPSGSLHGVMRVRGFVQDDAHIFCTEAQIASEV----------- 337

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                 +   + A      G    +  V   T   Q        D    +     +    
Sbjct: 338 -----TRFCRLLARVYADFGFAQEQIRVKFSTRPEQRIGDDATWDRAERALAEACEAAGL 392

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D+L    +     ++        +     ++A + G
Sbjct: 393 SYEHAPGEGAFYGPKLEF---ALIDTLEREWQCGTIQVDY----QLPSC--ERLNAEYVG 443

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D + H    +    IG++     ++   + G    W   V    I +           +
Sbjct: 444 EDNQRHMPVILHRTVIGSLERFIGILIEHYGGAFPPWLAPVQAVVIPVAP------AFLE 497

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L      V  D   E++ ++   A     P  +IVG + +   +V ++ R T
Sbjct: 498 YAQHVARELCARSLRVQADVSAERMNAKIRTAQTQKVPYLLIVGERELRAQQVAVRPR-T 556

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G +  M L     +   +    
Sbjct: 557 GPQHSMGLSAFSTFLLAKLETR 578


>gi|183221968|ref|YP_001839964.1| prolyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189912036|ref|YP_001963591.1| prolyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|226701304|sp|B0SDM9|SYP_LEPBA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701305|sp|B0SM58|SYP_LEPBP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167776712|gb|ABZ95013.1| Prolyl-tRNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167780390|gb|ABZ98688.1| Prolyl-tRNA synthetase (Proline--tRNA ligase; ProRS) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 586

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 124/393 (31%), Positives = 193/393 (49%), Gaps = 5/393 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S Y +P  +E+P+DA +ASHKLM+R G+I + + G+YS+LPLG + L  +  I+R+E
Sbjct: 1   MKASSYLIPTAKEDPQDAVVASHKLMMRAGLIRKSAAGLYSYLPLGLRVLRKIEGIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G +E  +P L  +++W ESGR+D  GKEM RL DR+D     GPTHEE    + + 
Sbjct: 61  MDKAGGLEFQLPILTPSEIWKESGRWDKMGKEMFRLKDRHDNESCLGPTHEESFCVLVKP 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY++LP   YQI  KFRDE+RPRFGV+RSREF MKDAYSF L  E    +Y  M  +
Sbjct: 121 MVRSYKDLPINVYQIHTKFRDEIRPRFGVIRSREFTMKDAYSFHLDDESLDKTYQTMRKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDF 239
           Y RIF  +GL +IP++A+SG +GG  S EF+V++  GE  +  C        I       
Sbjct: 181 YRRIFAGMGLTTIPVQADSGNMGGSASEEFMVVSPIGEETLTICPSCHYSGNIEKTPVIV 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI--EVGHIFYFGTKYSLP 297
           +   +      +      A   +     F +  E   + A  +  +  +I  F       
Sbjct: 241 NRNATKQVFDGKGKLHTPAKKSITEVAEFLNTKEENLLKAVAVVADGQYILVFLEGDREL 300

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                K   G +    MG   +  + +V   I         +     A    +   I   
Sbjct: 301 NENKLKNHLGCNELRPMGPAEMEKLGLVPGFIGPGFPKSESLKIYIDALLDWNFSYIAGG 360

Query: 358 DQVCRDAC-EKIYARLSKVGCDVFWDDMGEQIG 389
           +++       ++ +   +       D    ++G
Sbjct: 361 NEIDHHIAGVQLTSIFKEEEV-TKIDISQAKVG 392



 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 6/197 (3%)

Query: 252 WTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           +        D+   K+ D  P       + +GIEVGHIF  G KYS     T     GK 
Sbjct: 376 FKEEEVTKIDISQAKVGDPCPSCGTGLTAEKGIEVGHIFKLGQKYSKAFDITVLNDKGKA 435

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               MG YGIG  R +A VIE  +D KGI WP S+APF + L++I  +        E IY
Sbjct: 436 TTTTMGCYGIGVNRCMATVIEQCNDEKGIFWPVSIAPFTVCLVSIAKNPDDIAKI-ETIY 494

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L + G +V WDD     G +F  ++L+GFP+++ +G  F+  +++ I  R +   + +
Sbjct: 495 KSLVESGIEVLWDDRDLGPGFKFKDSELIGFPIRITLGKGFLEKNEITILDRKSMAEDTL 554

Query: 430 ---SLEEVINYASHRFS 443
              + EE++ +   + S
Sbjct: 555 VYTTNEELVTHLKLKIS 571


>gi|322796311|gb|EFZ18882.1| hypothetical protein SINV_16250 [Solenopsis invicta]
          Length = 807

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 73/436 (16%), Positives = 137/436 (31%), Gaps = 44/436 (10%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
             RD      +  L     H+ S G   + P G    + +   IR E  + G  E+  P 
Sbjct: 405 AKRDHRKIGKEQELY--FFHELSPGSCFFQPRGAYIYNTLMEFIRSEYRKRGFQEVITPN 462

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + ++ LW  SG +  Y + M    D   +     P +      IF    +S+R LP    
Sbjct: 463 IYNSKLWQTSGHWQHYAENMFSF-DVEKETFALKPMNCPGHCLIFDVRCRSWRELPLRLA 521

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
              +  R+EL     G+ R R F   DA+ F    +      +        ++  LG   
Sbjct: 522 DFGVLHRNELSGALTGLTRVRRFQQDDAHIFCSIEQIKDE-ISGALDFLWHVYSVLGFTF 580

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                 + P       E                   +    +     +      S+  + 
Sbjct: 581 NLC-LSTRPEKFMGDIE-----------------VWNEAEKALEESLNAFGQPWSLNPED 622

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+    + D+L    + +   ++    F    ++    + ++    G+    
Sbjct: 623 GAFYGPKIDI---TIMDALKRAHQTATIQLD----FQLPIRF----NLSYVNEAGEKTRP 671

Query: 313 QMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            +    I     R++A V ES             A                 D   ++  
Sbjct: 672 VIIHRAILGSVERMIAIVTESYGGKWPYWLSPRQAMVVPVA-------SQFDDYAYEVKQ 724

Query: 371 RLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +L   G  V  D D  + +  +   A L  F   ++VG K  +   V ++ R   +  ++
Sbjct: 725 KLWDAGVMVEVDTDSSDTLNKKIRNAQLAQFNFILVVGEKERNAGTVNVRTRDNTVHGEI 784

Query: 430 SLEEVINYASHRFSNN 445
           +++E+I          
Sbjct: 785 AVDELIVKLKVLKETR 800


>gi|220906778|ref|YP_002482089.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 7425]
 gi|254782895|sp|B8HNJ7|SYP_CYAP4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219863389|gb|ACL43728.1| prolyl-tRNA synthetase [Cyanothece sp. PCC 7425]
          Length = 613

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 120/268 (44%), Positives = 164/268 (61%), Gaps = 4/268 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E+P +AEI SHKL+LR G I +   G+Y++LPL  + L  V+ I+R+E
Sbjct: 1   MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGVYAYLPLMWRVLGKVSQIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P +Q A+LW ESGR+D+Y K    M  L DR D+ +  GPTHEEV+T I
Sbjct: 61  MNAAGAQECLLPQIQPAELWQESGRWDTYTKAEGIMFALTDRQDRQLGLGPTHEEVITTI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I++YR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSFD   E  + +Y KM
Sbjct: 121 ARDLIRTYRQLPQNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFDADVESLRVAYGKM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  I  R GLK   + A+SG IGG  S EF+VLAD GE +V  ++D   +    E  
Sbjct: 181 HQAYCNILQRCGLKYRAVDADSGAIGGSGSQEFMVLADAGEDEVLYTEDGR-YAANVEKA 239

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNE 265
               + +  S + ++       +D  ++
Sbjct: 240 ISLPVDAEPSGLTKFEKRETPGTDTIDK 267



 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 99/172 (57%), Gaps = 1/172 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           PE    +ARGIE+GHIF  GTKYS  M AT+    G++  + MG YGIG  R+  A +E 
Sbjct: 438 PEQTLKTARGIEIGHIFQLGTKYSQAMGATYTNEQGEEVPLVMGCYGIGVSRLAQAAVEQ 497

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GIIWP ++AP++  ++    ++    +A  ++Y  L+  G +   DD  E+ G +
Sbjct: 498 SYDKDGIIWPVAIAPYQAIVVIPNLNETTQVEAATQLYQDLNAAGIETLLDDRNERAGVK 557

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F  ADL+G P +++ G + ++  KVE+  R +    +++L++VI       +
Sbjct: 558 FKDADLIGIPYRIVTG-RSLAQGKVEVVQRASRSSTEIALDQVIPTLKEWIA 608


>gi|328543265|ref|YP_004303374.1| Threonyl-tRNA synthetase [polymorphum gilvum SL003B-26A1]
 gi|326413011|gb|ADZ70074.1| Threonyl-tRNA synthetase [Polymorphum gilvum SL003B-26A1]
          Length = 654

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 77/435 (17%), Positives = 144/435 (33%), Gaps = 40/435 (9%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   RD      ++ L      +   G+  W   G     ++ A +R     
Sbjct: 230 KAYLHMLEEAEKRDHRKLGREMDLF--HFQEEGPGVVFWHAKGWSLFQSLVAYMRRRL-A 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +  Y + M  +   + +A         P +      IF
Sbjct: 287 ADYDEVNAPQILDTSLWETSGHWGWYKENMFAVQCADTEAEDTRLFALKPMNCPGHVQIF 346

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +  +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + +       
Sbjct: 347 KHGLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHIFCTEEQLAAECLKIN 406

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               L ++   G + I ++  + P     S      A+  E      K   D       T
Sbjct: 407 -DLILSVYQDFGFEEIVVKLSTRPEKRVGSDALWDHAE--EVMTRVLKQIEDQSGGRIKT 463

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                      +    A Y    +     L D++    +     ++      FG      
Sbjct: 464 GI---------LPGEGAFYGPKFEY---TLRDAIGREWQCGTTQVDFNLPERFG------ 505

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             A +   DG+      +     G+M     ++  +  G   +W         ++     
Sbjct: 506 --AFYVDKDGEKKTPVMVHRAICGSMERFLGILIENFAGHFPLWLAPRQVVVATIT---- 559

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  ++++A L+K G     D   E+I  +     L   P+ ++ G +   +  V
Sbjct: 560 --SEADDYAKEVHAALTKAGLRADLDLRNEKINYKVREHSLAKTPVILVCGKREAEERTV 617

Query: 417 EIKHRLTGIREDMSL 431
            ++      +  M L
Sbjct: 618 NVRRLGKADQVAMGL 632


>gi|257084658|ref|ZP_05579019.1| prolyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|256992688|gb|EEU79990.1| prolyl-tRNA synthetase [Enterococcus faecalis Fly1]
          Length = 572

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 106/235 (45%), Positives = 146/235 (62%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  + C     D+    E
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTI-CYSTESDYAANLE 234



 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 107/187 (57%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +  D  P+   V    +GIE+GHIF  GT+YS  M AT    +G++  V MG Y
Sbjct: 382 EDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E + D +GI WP  +APF + ++ +   D+      +++ A +++ G 
Sbjct: 442 GIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+ + 
Sbjct: 502 EVLVDDRNERAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELEST 560

Query: 438 ASHRFSN 444
            S   + 
Sbjct: 561 LSILMNT 567


>gi|53803705|ref|YP_114445.1| prolyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
 gi|81823621|sp|Q606K3|SYP_METCA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|53757466|gb|AAU91757.1| prolyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
          Length = 583

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 127/235 (54%), Positives = 168/235 (71%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  L+E P DAEI SH+LMLR G+I + + G+Y+WLPLG K L  V  ++REE
Sbjct: 1   MRTSQFPLNTLKEIPSDAEIVSHQLMLRAGLIRKLAAGLYTWLPLGLKVLRRVERVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR++ YG E+ RL DR+D+A   GPTHEE++TD+ R+
Sbjct: 61  MDRAGALEVLMPVVQPAELWQESGRWEQYGPELARLHDRHDRAFCLGPTHEEIITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSYR LP  FYQIQ KFRDE+RPRFGVMR+REF+MKDAYSF L  E    +Y+ M+V+
Sbjct: 121 ELKSYRQLPVNFYQIQTKFRDEIRPRFGVMRAREFVMKDAYSFHLDQESLAQTYDAMYVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF RLGL+  P+ A++G IGG  SHEF VLAD+GE  +       D+    E
Sbjct: 181 YSNIFSRLGLRFRPVLADTGAIGGSHSHEFHVLADSGEDAIAF-STVSDYAANVE 234



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 104/189 (55%), Gaps = 3/189 (1%)

Query: 260 SDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+ N    D  P+       ARGIEVGHIF  GTKYS  ++AT    +G+   + MG Y
Sbjct: 395 CDLRNVVEGDPSPDGLGTLRIARGIEVGHIFQLGTKYSAALNATVLNEEGRSQVMLMGCY 454

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVG 376
           GIG  RVVAA IE +HD +GI+WP+++APF+++L  I        R   E++YA LS  G
Sbjct: 455 GIGVSRVVAAAIEQNHDERGIVWPEALAPFQVALCPINMQTSARVRTTAERLYAELSAAG 514

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V +DD   + G  FA  +L+G P ++++  + +    +E K R     + + ++ VI 
Sbjct: 515 FEVLYDDRKVRPGVMFADMELIGIPHRIVISERGLDSGALEYKGRRDADNQSIGIDGVIE 574

Query: 437 YASHRFSNN 445
           +   R  + 
Sbjct: 575 FLRERSESR 583


>gi|303232756|ref|ZP_07319441.1| proline--tRNA ligase [Atopobium vaginae PB189-T1-4]
 gi|302481242|gb|EFL44317.1| proline--tRNA ligase [Atopobium vaginae PB189-T1-4]
          Length = 574

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 115/266 (43%), Positives = 164/266 (61%), Gaps = 5/266 (1%)

Query: 1   MR----RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAI 56
           M+     S+ + P L+ENP DA+IASH+L+ R GMI + + G+Y++LPL  +++  +  I
Sbjct: 1   MKRYATMSRLYAPTLKENPVDADIASHRLLCRAGMIRKAASGLYTYLPLAWRSILKIEGI 60

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           IR+E       EM  P L SA+LW +SGR+D YG E++RL DR+D     GPTHEE   D
Sbjct: 61  IRDEMEAIDCQEMLTPILTSAELWHQSGRWDVYGPELMRLTDRHDHEYALGPTHEETYVD 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           + RS ++SY+ LP T Y IQ KFRDE RPRFG+MRSREF+MKDAYSF  T E  +  Y+ 
Sbjct: 121 LVRSELRSYKQLPVTLYHIQDKFRDERRPRFGLMRSREFIMKDAYSFCATQESLQQCYDD 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSE 235
              +Y  +  R G++++P+ A+SG IGGD S EF+ LAD GE + V+C          + 
Sbjct: 181 QKQAYANVARRCGIRALPVVADSGQIGGDTSVEFMALADAGEAELVYCDSCGYAADAEAA 240

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSD 261
            T      +  + +++   P  +T D
Sbjct: 241 TTRIAIENTTQTTLKKVHTPQCSTID 266



 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 74/203 (36%), Positives = 109/203 (53%), Gaps = 2/203 (0%)

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           V           DV + +  D  P       SARGIE+  +F  GTKYS  M ATF   D
Sbjct: 371 VPGRDFELGEYVDVVSAQAGDGCPRCAASLKSARGIEISQVFQLGTKYSSAMGATFMDED 430

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G +    MG YGIG  R +AAV+E  +D  GIIWP SVAP+++ +I +  +D V      
Sbjct: 431 GTEKPFIMGCYGIGVSRTLAAVVEQHYDDHGIIWPISVAPYEVEVIALDTNDDVIWPQAT 490

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            I  +L+  G +V  DD   + G +F  ADL+GFP QV+ G K +    VE+K R  G R
Sbjct: 491 AIAEKLTARGIEVIVDDRELRPGVKFNDADLMGFPYQVVCGKKALERGCVELKCRADGSR 550

Query: 427 EDMSLEEVINYASHRFSNNRPVL 449
            +++L+ +++    R ++++ +L
Sbjct: 551 VEVALDAIVSELEQRIAHDKELL 573


>gi|226226691|ref|YP_002760797.1| threonyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
 gi|226089882|dbj|BAH38327.1| threonyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
          Length = 660

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 143/447 (31%), Gaps = 46/447 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           ++   + +   RD  +    L L    I   + G   W P G    + +   +RE Q   
Sbjct: 235 QHLHNLEEAKKRDHRVLGKALGLFQ--IFPQAPGAAFWTPKGTTLYNTLEGFVRERQQEA 292

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN--DKAMIYGPTHEEVMTDIFRSHI 122
              E+  P L +  LW +SG +  Y + M  + D    +  M   P +      +F S  
Sbjct: 293 -FQEIKTPLLYNKKLWEQSGHWGKYKENMFLVLDNETGEHDMSLKPMNCPSHHVLFASEK 351

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR +P  F    +  R+EL     G+ R R+F   D + + L  +  +     +    
Sbjct: 352 HSYRQMPVRFVTFDVLHRNELSGALSGLTRVRQFSQDDCHVY-LREDQIESEVKFLMDFI 410

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L  +   GLK+    A + P     S E                   D    +     + 
Sbjct: 411 LSYYDTFGLKANLKFA-TRPEQRIGSDE-----------------LWDRAEAALKAALES 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 + E   A Y    D     + DS+    ++    ++                  
Sbjct: 453 TGRSYEMKEGDGAFYGPKIDFD---VTDSIGRAWQLGTIQLDYNAP--------ERFELA 501

Query: 302 FKGADGKDHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G D   H   +    +     R +A +IE       +             I+  AH Q
Sbjct: 502 YTGEDNAPHRPVVIHRAVSGSFERFIAILIEHFAGAFPVWLAPEQVRVIPIAIDFNAHGQ 561

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                   +  R+   G     D   E +  +    ++   P   ++G +   ++ V ++
Sbjct: 562 A-------LVDRMKAAGIRATLDARNETLNYRVREGEVEKVPYMCVIGRRESEENTVALR 614

Query: 420 HRLTGIREDM-SLEEVINYASHRFSNN 445
            R  G ++++ S +  +        + 
Sbjct: 615 TRGAGKKQEILSADAFLARLQDEVRSR 641


>gi|62185526|ref|YP_220311.1| threonyl-tRNA synthetase [Chlamydophila abortus S26/3]
 gi|73919780|sp|Q5L4T1|SYT_CHLAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|62148593|emb|CAH64365.1| threonyl-tRNA synthetase [Chlamydophila abortus S26/3]
          Length = 635

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 142/441 (32%), Gaps = 43/441 (9%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD  +   KL L +    + S G+  + P G    D +    +      G 
Sbjct: 227 LHQLKEAKKRDHRVLGMKLDLFSQ--QECSAGMPFFHPRGMIIWDALIGYWKRLHQLAGY 284

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P L S  LW  SG + +Y + M  L    D+     P +       +++ + SY+
Sbjct: 285 KEIQTPQLMSRSLWEVSGHWSNYRENMYTLK-IEDEDYAIKPMNCPGCMLYYKTRLHSYK 343

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
             P    +I    R E+     G+MR R F   DA+   LTPE  +     +      ++
Sbjct: 344 QFPLRIAEIGHVHRYEVSGALSGLMRVRAFHQDDAH-VFLTPEQVEEETLNILHLVSELY 402

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL+   +   + P                E     S +  +    +      +  + 
Sbjct: 403 STFGLEY-HLELSTRP----------------EKATIGSDELWELATAALERALVNSHTP 445

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I     A Y    D+H           K    R  + G I              +  A
Sbjct: 446 FIINPGDGAFYGPKIDIHV----------KDAIQRTWQCGTI-QLDMFLPERFELEYTNA 494

Query: 306 DGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            G+     M    +     R +  +IE       +                       + 
Sbjct: 495 QGEKSTPVMLHRALFGSIERFLGILIEHFKGRFPLWLSPEHIRVITVA-------DRHQP 547

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+     K+G  V  DD  E +  +   A  +     V +G + +  + + I+ R  
Sbjct: 548 RAQKLATAWQKLGFVVTVDDSNESVSKKIRNAQNMQVNYMVTLGDREIEQNTLAIRTRDN 607

Query: 424 GIREDMSLEEVINYASHRFSN 444
            +  DM+ ++ +N      ++
Sbjct: 608 RVLNDMTEDKFLNTLLEEKNS 628


>gi|168064726|ref|XP_001784310.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664141|gb|EDQ50872.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 685

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 143/445 (32%), Gaps = 38/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +  L     H+ S G   +LP G +  + + A IR+E  
Sbjct: 278 LKEYLHNVEEAKKRDHRKLGQQQELF--FFHELSPGSCFFLPHGARIYNKLQAFIRDEYR 335

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + +  LW  SG   +Y   M    +   +     P +      IF   +
Sbjct: 336 KRGYEEVVSPNMFNMQLWETSGHAANYKDNMFTF-EVEKQEFGLKPMNCPGHCLIFDHRV 394

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP       +  R+EL     G+ R R F   DA+ F +  +             
Sbjct: 395 RSYRELPLRLADFGVLHRNELSGALSGLTRVRRFQQDDAHIFCMESQLLTE-VKGALDFL 453

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
              +   G     +   + P       E    A+                  +     + 
Sbjct: 454 EFAYGVFGFTF-ELELSTRPEKYLGEIETWNRAEK-----------------ALEAALNA 495

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+    +FD+L    + +   ++    F    +++L  S  
Sbjct: 496 FGKPWQINEADGAFYGPKIDI---TVFDALKRKFQCATIQLD----FQLPIRFNLSYSTE 548

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 ++  V +    +G++  + A++                        +    +  
Sbjct: 549 --DEAKREKPVIIHRAILGSVERMFAILLEH------YAGKWPFWLSPRQCIVCPVSEKF 600

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++   ++  G     D    ++  +   A L  F   ++VG +  S  +V I+ R
Sbjct: 601 THYAVEVRDAINAAGYFCEADVTDRKLQKKIREAQLAQFNYILVVGEEETSKKQVNIRTR 660

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
              +    S+ E++       +  R
Sbjct: 661 DNVVHGTKSVTELLADFQKETAEYR 685


>gi|282854645|ref|ZP_06263980.1| proline--tRNA ligase [Propionibacterium acnes J139]
 gi|282582227|gb|EFB87609.1| proline--tRNA ligase [Propionibacterium acnes J139]
          Length = 585

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 107/272 (39%), Positives = 156/272 (57%), Gaps = 6/272 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE 
Sbjct: 4   RMSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +  
Sbjct: 64  ANIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y
Sbjct: 124 YSSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D
Sbjct: 184 IRIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPD 243

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            + ++        P A   D  + +  +SL  
Sbjct: 244 PLPID------GLPEAEVVDTPDARTIESLVR 269



 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              DV   +  D  P+   +   ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 399 GVIDVAEIREGDLAPDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMG 458

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ 
Sbjct: 459 SYGLGVSRAVAAIAEGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEA 517

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 518 GLEVLLDDRKASPGVKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 576

Query: 436 NYASHRFS 443
                   
Sbjct: 577 CAVLKEVR 584


>gi|15899227|ref|NP_343832.1| threonyl-tRNA synthetase [Sulfolobus solfataricus P2]
 gi|229578099|ref|YP_002836497.1| threonyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
 gi|229583311|ref|YP_002841710.1| threonyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
 gi|22654132|sp|Q97VW8|SYT_SULSO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516740|sp|C3NMY1|SYT_SULIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516744|sp|C3N9B3|SYT_SULIY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|13815789|gb|AAK42622.1| Threonyl-tRNA synthetase (thrS) [Sulfolobus solfataricus P2]
 gi|228008813|gb|ACP44575.1| threonyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
 gi|228014027|gb|ACP49788.1| threonyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
          Length = 545

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 154/443 (34%), Gaps = 39/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +    D  +   KL L +    +   G+  + P GQ   + + A +RE  +  G
Sbjct: 128 YLSWLEKAEETDHRLIGEKLDLFSFH-EEAGSGLVLFHPKGQTIRNELIAFMREINDSMG 186

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+    +   D+W  SG Y  Y  +++ + +         P +      I++S  ++Y
Sbjct: 187 YQEVYTSHVFKTDIWKISGHYTLYRDKLI-VFNMEGDEYGVKPMNCPAHILIYKSKPRTY 245

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +    +R E +   +G++R R F+  D + F    +  +     +  +    
Sbjct: 246 RDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVW 305

Query: 185 FHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                    I     + P     S E                   +    +  +   +  
Sbjct: 306 HKFGFKDDDIKPYLSTRPDESIGSDE-----------------LWEKATNALISALQESG 348

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E+  A Y    D    ++ DSL    ++S   ++    F    ++       + 
Sbjct: 349 LKFGIKEKEGAFYGPKIDF---EIRDSLGRWWQLSTIQVD----FNLPERF----KLEYI 397

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +     G++    A++     GK   W   ++  ++ ++ I        
Sbjct: 398 DKDGIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTW---LSSVQVRVLPIT---DEVN 451

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   + K       D  GE +  +   A   G P  +IVG K  S+  V ++ R 
Sbjct: 452 EYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRARG 511

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                ++  E+ +       +  
Sbjct: 512 NIEVRNVKFEKFLELLITEIAQR 534


>gi|319401447|gb|EFV89657.1| prolyl-tRNA synthetase [Staphylococcus epidermidis FRI909]
          Length = 567

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 119/289 (41%), Positives = 170/289 (58%), Gaps = 5/289 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWSAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REFLMKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKYRDEKRPRFGLLRGREFLMKDAYSFHFDEASLDATYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +    +  D+    E  +  
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVY-SNESDYAANIEKAEVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
              S                +  N K    + E        I    IF 
Sbjct: 240 YHPSHKHS----ALAELTKVETPNVKTAQEVAEYLERPLDEIVKAMIFK 284



 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 99/166 (59%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GIIW
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQNNDENGIIW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF I LI I       R   +++Y +L     DV +DD  E+ G +F  +DL+G 
Sbjct: 464 PKSVTPFDIHLITINPKKDDQRTLGDQLYQKLMDS-YDVLYDDRKERAGVKFNDSDLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           P++V+VG +   +  VE+K R+ G+ E++ ++E+  Y    F N +
Sbjct: 523 PVRVVVGKR-AEEGIVEVKQRINGLSEEVQVDELETYLQELFKNIK 567


>gi|34540737|ref|NP_905216.1| threonyl-tRNA synthetase [Porphyromonas gingivalis W83]
 gi|73919814|sp|Q7MVQ5|SYT_PORGI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|34397051|gb|AAQ66115.1| threonyl-tRNA synthetase [Porphyromonas gingivalis W83]
          Length = 653

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 69/436 (15%), Positives = 142/436 (32%), Gaps = 36/436 (8%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L          G+  WLP G +    +   +++ Q   G  ++  P
Sbjct: 239 AKKRDHRKIGKELELFA-FSQNVGAGLPLWLPRGTQLRLRLEDFLKQIQKHFGYQQVITP 297

Query: 73  TLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            + + +L++ SG Y  YG++  R     +  +  +  P +     +IF+    SYR+LP 
Sbjct: 298 HIGNKNLYITSGHYAKYGQDSFRPINTPQEGEEFMLKPMNCPHHCEIFKITPHSYRDLPI 357

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +    +R E      G+ R R F   DA+ F    +  +     M + ++       
Sbjct: 358 RLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFCRPDQLKEEFCKVMDIIFIIFKALDF 417

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                  +    +  +              +   S++  +    +     ++      I 
Sbjct: 418 KNFEAQISLRDKVNRE--------------KYIGSEENWERAERAIIEACEEKGLPAVIE 463

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D     + D+L    ++    ++                  + G D K 
Sbjct: 464 YGEAAFYGPKLDFM---VKDALGRRWQLGTIQVDYNLP--------ERFDLEYTGEDNKK 512

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H    +     G+M    AV+     GK  +W           + +    +   +   ++
Sbjct: 513 HRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVVVLPVSERFNEYAHRV 566

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L++    V  DD  E++G +    +L   P  +IVG     + +V ++ +  G    
Sbjct: 567 AKELNQRDIRVQVDDRNEKVGRKIRDNELKRIPYMLIVGENESREEEVSVRKQGEGDMGI 626

Query: 429 MSLEEVINYASHRFSN 444
           M +            +
Sbjct: 627 MKITTFAELIEKEVDD 642


>gi|315032880|gb|EFT44812.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0017]
 gi|315150170|gb|EFT94186.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0012]
          Length = 572

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 106/235 (45%), Positives = 146/235 (62%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  + C     D+    E
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTI-CYSTESDYAANLE 234



 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 107/187 (57%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +  D  P+   V    +GIE+GHIF  GT+YS  M AT    +G++  V MG Y
Sbjct: 382 EDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E + D +GI WP  +APF + ++ +   D+      +++ A +++ G 
Sbjct: 442 GIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+ + 
Sbjct: 502 EVLVDDRNERAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELEST 560

Query: 438 ASHRFSN 444
            S   + 
Sbjct: 561 LSILMNT 567


>gi|229549443|ref|ZP_04438168.1| prolyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255972147|ref|ZP_05422733.1| prolyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|257421971|ref|ZP_05598961.1| prolyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|312953422|ref|ZP_07772262.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|229305680|gb|EEN71676.1| prolyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255963165|gb|EET95641.1| prolyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|257163795|gb|EEU93755.1| prolyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|310628631|gb|EFQ11914.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|315152090|gb|EFT96106.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0031]
 gi|315155317|gb|EFT99333.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0043]
 gi|315159106|gb|EFU03123.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0312]
 gi|327535671|gb|AEA94505.1| proline--tRNA ligase [Enterococcus faecalis OG1RF]
          Length = 572

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 106/235 (45%), Positives = 146/235 (62%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  + C     D+    E
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTI-CYSTESDYAANLE 234



 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 107/187 (57%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +  D  P+   V    +GIE+GHIF  GT+YS  M AT    +G++  V MG Y
Sbjct: 382 EDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E + D +GI WP  +APF + ++ +   D+      +++ A +++ G 
Sbjct: 442 GIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+ + 
Sbjct: 502 EVLVDDRNERAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELEST 560

Query: 438 ASHRFSN 444
            S   + 
Sbjct: 561 LSILMNT 567


>gi|227553916|ref|ZP_03983963.1| prolyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|255975215|ref|ZP_05425801.1| prolyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256617163|ref|ZP_05474009.1| prolyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256763073|ref|ZP_05503653.1| prolyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256961317|ref|ZP_05565488.1| prolyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256963555|ref|ZP_05567726.1| prolyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|257082033|ref|ZP_05576394.1| prolyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257416590|ref|ZP_05593584.1| prolyl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|257419837|ref|ZP_05596831.1| prolyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|293383602|ref|ZP_06629512.1| proline--tRNA ligase [Enterococcus faecalis R712]
 gi|293387285|ref|ZP_06631842.1| proline--tRNA ligase [Enterococcus faecalis S613]
 gi|307271494|ref|ZP_07552766.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|307277205|ref|ZP_07558309.1| prolyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|307285834|ref|ZP_07565968.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|312899806|ref|ZP_07759125.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|312906152|ref|ZP_07765164.1| prolyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312909497|ref|ZP_07768352.1| prolyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|227176902|gb|EEI57874.1| prolyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|255968087|gb|EET98709.1| prolyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256596690|gb|EEU15866.1| prolyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256684324|gb|EEU24019.1| prolyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256951813|gb|EEU68445.1| prolyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256954051|gb|EEU70683.1| prolyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|256990063|gb|EEU77365.1| prolyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257158418|gb|EEU88378.1| prolyl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
 gi|257161665|gb|EEU91625.1| prolyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|291079114|gb|EFE16478.1| proline--tRNA ligase [Enterococcus faecalis R712]
 gi|291083322|gb|EFE20285.1| proline--tRNA ligase [Enterococcus faecalis S613]
 gi|295113413|emb|CBL32050.1| prolyl-tRNA synthetase, family II [Enterococcus sp. 7L76]
 gi|306502595|gb|EFM71862.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|306506135|gb|EFM75301.1| prolyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|306511766|gb|EFM80764.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|310627798|gb|EFQ11081.1| prolyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|311290170|gb|EFQ68726.1| prolyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|311293056|gb|EFQ71612.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|315146006|gb|EFT90022.1| prolyl-tRNA synthetase [Enterococcus faecalis TX2141]
 gi|315146660|gb|EFT90676.1| prolyl-tRNA synthetase [Enterococcus faecalis TX4244]
 gi|315161730|gb|EFU05747.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0645]
 gi|315166430|gb|EFU10447.1| prolyl-tRNA synthetase [Enterococcus faecalis TX1341]
 gi|315170318|gb|EFU14335.1| prolyl-tRNA synthetase [Enterococcus faecalis TX1342]
 gi|315173646|gb|EFU17663.1| prolyl-tRNA synthetase [Enterococcus faecalis TX1346]
 gi|315574384|gb|EFU86575.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315580142|gb|EFU92333.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0309A]
          Length = 572

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 106/235 (45%), Positives = 146/235 (62%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  + C     D+    E
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTI-CYSTESDYAANLE 234



 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 107/187 (57%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +  D  P+   V    +GIE+GHIF  GT+YS  M AT    +G++  V MG Y
Sbjct: 382 EDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E + D +GI WP  +APF + ++ +   D+      +++ A +++ G 
Sbjct: 442 GIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+ + 
Sbjct: 502 EVLVDDRNERAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELEST 560

Query: 438 ASHRFSN 444
            S   + 
Sbjct: 561 LSILMNT 567


>gi|156552955|ref|XP_001603180.1| PREDICTED: similar to threonyl-tRNA synthetase [Nasonia
           vitripennis]
          Length = 859

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 69/432 (15%), Positives = 145/432 (33%), Gaps = 42/432 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   IR E  + G  E+ 
Sbjct: 453 EEAAKRDHRKIGKEQELF--FFHELSPGSCFFQPRGAHIYNTLVEFIRGEYKKRGFQEVV 510

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + ++ LW  SG +  Y + M    D   +     P +      IF    +S+R LP 
Sbjct: 511 TPNIYNSKLWQTSGHWQHYSENMFSF-DVEKETFALKPMNCPGHCMIFDVRNRSWRELPL 569

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F  + +               ++   G
Sbjct: 570 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTSEQIKDEM-LGALDFLDHVYSVFG 628

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F +   T   +        D    + +   D      ++ 
Sbjct: 629 FT------------------FNLCLSTRPEKFLGEVAVWDAAEKALSESLDAFGKPWTLN 670

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    ++    +  +    G+ 
Sbjct: 671 PGDGAFYGPKIDI---TIMDALKRAHQCATIQLD----FQLPIRF----NLNYVNETGEK 719

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +    +G++  + A++    +     WP  ++P ++ +I +        +   + 
Sbjct: 720 TRPVIIHRAILGSVERMIAILT---ESYAGKWPFWLSPRQVMVIPVGPS---LDEYATQT 773

Query: 369 YARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             ++   G     D D G+ +  +   A L  F   ++VG K  +   V ++ R   +  
Sbjct: 774 RDKIHAAGFMTEVDTDHGDTLNKKIRNAQLDQFNFILVVGEKEKAAGTVNVRTRDNKVHG 833

Query: 428 DMSLEEVINYAS 439
           ++ ++++I    
Sbjct: 834 EIGVDDLIQKFQ 845


>gi|229545199|ref|ZP_04433924.1| prolyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|256853721|ref|ZP_05559086.1| prolyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|257079587|ref|ZP_05573948.1| prolyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|294779463|ref|ZP_06744861.1| proline--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|307270862|ref|ZP_07552149.1| prolyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307287732|ref|ZP_07567775.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|307291052|ref|ZP_07570938.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|229309744|gb|EEN75731.1| prolyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|256710664|gb|EEU25707.1| prolyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|256987617|gb|EEU74919.1| prolyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|294453469|gb|EFG21873.1| proline--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|306497901|gb|EFM67432.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|306501470|gb|EFM70773.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|306512775|gb|EFM81420.1| prolyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|315030982|gb|EFT42914.1| prolyl-tRNA synthetase [Enterococcus faecalis TX4000]
          Length = 572

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 106/235 (45%), Positives = 146/235 (62%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  + C     D+    E
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTI-CYSTESDYAANLE 234



 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 107/187 (57%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +  D  P+   V    +GIE+GHIF  GT+YS  M AT    +G++  V MG Y
Sbjct: 382 EDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E + D +GI WP  +APF + ++ +   D+      +++ A +++ G 
Sbjct: 442 GIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+ + 
Sbjct: 502 EVLVDDRNERAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELEST 560

Query: 438 ASHRFSN 444
            S   + 
Sbjct: 561 LSILMNT 567


>gi|126695961|ref|YP_001090847.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
 gi|166225476|sp|A3PBX1|SYT_PROM0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126543004|gb|ABO17246.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
          Length = 638

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 136/442 (30%), Gaps = 40/442 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      K  L    I + S G+  W P G      +   IRE   +  
Sbjct: 231 YLTRIEEAEKRDHRKLGKKHSLF--HIQEESPGMIFWHPNGWTIYQVLEKYIREILKKND 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P      LW +SG ++ +  +M       ++     P +      +F   +KSY
Sbjct: 289 YLEIKTPQAVDKSLWEKSGHWEKFRDDMFT-TASENRTYAIKPMNCPCHIQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +     R+E      G+MR R F   DA+ F  T E  +   +        +
Sbjct: 348 KDLPIRLAEFGSCHRNEPSGALHGLMRVRNFTQDDAHIFC-TEEQIQEEVSTFIDLVFEV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P                      S+D  D    +     D+   
Sbjct: 407 YKTFGFDEIIIKLSTRPEKR-----------------VGSEDIWDKSEEALTKALDNKNL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++                AT+  
Sbjct: 450 KWELQPGEGAFYGPKIEF---SLKDCLSRVWQCGTIQVDFSMPIRLD--------ATYVD 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D +      +    +G+      ++   ++ K  IW        +S+           +
Sbjct: 499 IDNEKRNPVMLHRAILGSFERFIGILIEQYEAKFPIWLAPYQIILLSIT------DRNIE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C K    ++  G     D   E+IG +   A L   PL  ++G K      V ++    
Sbjct: 553 KCLKFNELINNNGYRSKVDIRNEKIGYKIREATLGRVPLIAVIGDKEEEIDSVALRALNG 612

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                 +L  +           
Sbjct: 613 KNLGIFNLPNLFKLMDELIEKK 634


>gi|83859100|ref|ZP_00952621.1| threonyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
 gi|83852547|gb|EAP90400.1| threonyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
          Length = 613

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 146/446 (32%), Gaps = 41/446 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + ++  RD      +L L T ++ +   G+  WLP G    D +  + R  ++R G   
Sbjct: 193 RLEEQAKRDHRKIGKELGLFT-LVEEVGAGLPMWLPAGNVIRDELEKLARITEHRAGYKR 251

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +S P +   DL+  SG    Y ++M      +++     P +      I+     SYR+L
Sbjct: 252 VSTPHITKGDLYHRSGHLPYYAEDMYAPIMIDEQEYYLRPMNCPHHHMIYAHDQWSYRDL 311

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P    +    +R E      G+MR R F   DA+ +    +        M +     +  
Sbjct: 312 PVRLSEYGQVYRYEASGGLSGLMRVRGFCQNDAHIYCRPDQAKDEFLAVMHMHA-DYYRL 370

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G++   MR     +                 +     +     +       D+      
Sbjct: 371 FGIQDFWMRLSLPDME-------------NLDKYVDDAEGWKTALSILKQAMDESGYPYK 417

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
            VE   A Y    D   + +                           +   +  +   DG
Sbjct: 418 EVEGEAAFYGPKVDFMVKSVV-----------GTEYAISTNQLDFMATKRFNLVYTAEDG 466

Query: 308 KDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
               V  +    +G+    AA +   + GK   W   ++P +  +I I    +   +  +
Sbjct: 467 SKQPVYVIHRAPMGSHERFAAFLIEHYAGKFPTW---LSPTQAVVIPIADRHE---EYAQ 520

Query: 367 KIYARL-------SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            +  +L          G     D   E++  +   A     P  ++VG     + +V ++
Sbjct: 521 TVRDQLFFSEVDSVNTGIRTETDFASERMQKKIRNAQHRQIPYMLVVGDAEAENGEVAVR 580

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
           HR  G    M +E++I   +   S  
Sbjct: 581 HRDHGDMGTMKVEDLIARIAKEQSGR 606


>gi|317052582|ref|YP_004113698.1| threonyl-tRNA synthetase [Desulfurispirillum indicum S5]
 gi|316947666|gb|ADU67142.1| threonyl-tRNA synthetase [Desulfurispirillum indicum S5]
          Length = 657

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 149/448 (33%), Gaps = 43/448 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L      + +     + P G    + +   IRE     
Sbjct: 235 EYLFFLEEAKKRDHRKLGKELDLFH-FDPEVAVASPFFHPKGTVVYNQLLEFIREMYRYY 293

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +   +LW  SG YD+Y + M    + + +     P +      I+ +  +S
Sbjct: 294 GYGEVITPQVMDVELWKRSGHYDNYVENM-YFTELDGQHNALKPMNCPTHVMIYGASSRS 352

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  +       R E      G+ R R F   DA+ F   P+  +     +    L+
Sbjct: 353 YRDLPVRYADFGRLHRYERSGVVQGLTRVRTFCQDDAHIFCR-PDQIEDEIKNLIDLILK 411

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            +     + I +   + P     S E    A++                 +     + + 
Sbjct: 412 TYKVFDFEDIAIGLSTRPEKSIGSDEIWQKAES-----------------ALAAALNSLS 454

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              SI E   A Y    D    ++ D++  + +++   ++      FG        A++ 
Sbjct: 455 VKFSINEGDGAFYGPKIDF---QVRDAIRRSWQLATVQLDFSMPQRFG--------ASYV 503

Query: 304 GADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              G+     M    +     R +   +E +                         +   
Sbjct: 504 DEQGQRQAPVMIHRAVLGSIERFMGLYLEHTAGALPFWLAPVQCSIIPV-------NDEL 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              C+++   L+++G  V  D   E +G +   +     P  ++VG K + +    ++  
Sbjct: 557 LPFCQQLRQILTRLGYRVEVDASSESMGKKIRRSQTQKHPYTLVVGKKELEERIFAVRAY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
                   S EE++        NNR  L
Sbjct: 617 GHKDTFASSWEELLERFHQE--NNRARL 642


>gi|19553198|ref|NP_601200.1| prolyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|62390834|ref|YP_226236.1| prolyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|81847611|sp|Q8NP31|SYP_CORGL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|21324764|dbj|BAB99387.1| Prolyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|41326172|emb|CAF20335.1| PROBABLE PROLYL-TRNA SYNTHETASE PROTEIN [Corynebacterium glutamicum
           ATCC 13032]
          Length = 588

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 109/282 (38%), Positives = 155/282 (54%), Gaps = 5/282 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + GIYSWLPLG +A+ N+ A++REE 
Sbjct: 4   RLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRVAPGIYSWLPLGLRAVRNIEAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DAIGGQELLFPALLPREPYETTQRWTEYGDSLFRLKDRKGADYLLGPTHEEMFAATVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF+MKD+YSFD++  G   SY K   +Y
Sbjct: 124 YNSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFVMKDSYSFDISDAGLDESYAKHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL+    +A SG +GG  S EF+ +++ GE   F      ++    E      
Sbjct: 184 QRIFDRLGLEYAICQATSGAMGGSASEEFLAVSENGE-DTFVRSTSGNYAANVEAVVTQ- 241

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
              +   +E    P A T +    +  D+L +        IE
Sbjct: 242 -PGVERDIEGL--PEAVTYETPVSETIDALVDWANSIDVQIE 280



 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 6/192 (3%)

Query: 258 ATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +    K  D  P  E     ARGIE+GHIF  G KY+          +GK     MG
Sbjct: 399 GFIEAAEIKEGDPAPAGEGTLTLARGIEIGHIFQLGRKYTEAFDVQILDENGKRAIPTMG 458

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R++A + E  HD  G+ W   VAP+++ ++     D    +A E+  A LS  
Sbjct: 459 SYGLGVTRLLAVLAEQRHDDAGLNWSVEVAPYQVHVVAAN-KDAAAIEAAERFAAELSAA 517

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G DV +DD      G +F  A+LLG P  +I+G +  ++ KVE++ R  G + ++  ++ 
Sbjct: 518 GLDVLFDDRPKVSPGVKFKDAELLGMPFALILG-RGYAEGKVELRVRG-GEKSELDADQA 575

Query: 435 INYASHRFSNNR 446
           +       +  R
Sbjct: 576 VAQIVEMVAQAR 587


>gi|257087410|ref|ZP_05581771.1| prolyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|256995440|gb|EEU82742.1| prolyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|315025439|gb|EFT37371.1| prolyl-tRNA synthetase [Enterococcus faecalis TX2137]
          Length = 572

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 106/235 (45%), Positives = 146/235 (62%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  + C     D+    E
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTI-CYSTESDYAANLE 234



 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 106/187 (56%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +  D  P+   V    +GIE+GHIF  GT+YS  M AT    +G++  V MG Y
Sbjct: 382 EDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E + D  GI WP  +APF + ++ +   D+      +++ A +++ G 
Sbjct: 442 GIGVSRLLSAIVEQNADEHGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+ + 
Sbjct: 502 EVLVDDRNERAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELEST 560

Query: 438 ASHRFSN 444
            S   + 
Sbjct: 561 LSILMNT 567


>gi|301779664|ref|XP_002925249.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like
           [Ailuropoda melanoleuca]
          Length = 890

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 154/446 (34%), Gaps = 40/446 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 473 KMMKTWEKFQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLMDFIREE 530

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    E+  P + ++ LW  SG +  Y + M    D         P +      IF  
Sbjct: 531 YHRRNFTEVLSPNMYNSRLWETSGHWQHYSENMFTF-DIEKDTFALKPMNCPGHCLIFAH 589

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F    +  +   N    
Sbjct: 590 RPRSWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEINGCLQ 648

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 649 FLQSVYSTFGFSFQLN-LSTRPENFLGEVE-----------------LWDEAEKQLQNSL 690

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 691 VEFGKPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 743

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K + V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 744 SK--DGDDKRNPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP--- 795

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C     ++ +   + G     D D    +  +   A L  +   ++VG K  +++ V +
Sbjct: 796 TCEKYALQVSSAFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKTNNAVNV 855

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           + R   I  ++S+   I+   +   +
Sbjct: 856 RTRDNKIHGEISVTSAIDKLKNLKKS 881


>gi|256956661|ref|ZP_05560832.1| prolyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|257090544|ref|ZP_05584905.1| prolyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|300861128|ref|ZP_07107215.1| proline--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|312903702|ref|ZP_07762876.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|256947157|gb|EEU63789.1| prolyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256999356|gb|EEU85876.1| prolyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|300850167|gb|EFK77917.1| proline--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|310632894|gb|EFQ16177.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|315035640|gb|EFT47572.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0027]
 gi|315578695|gb|EFU90886.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0630]
          Length = 572

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 106/235 (45%), Positives = 146/235 (62%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  + C     D+    E
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTI-CYSTESDYAANLE 234



 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 106/187 (56%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +  D  P+   V    +GIE+GHIF  GT+YS  M AT    +G++  V MG Y
Sbjct: 382 EDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E + D +GI WP  +APF + ++ +   D+      +++ A + + G 
Sbjct: 442 GIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMIEAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+ + 
Sbjct: 502 EVLVDDRNERAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELEST 560

Query: 438 ASHRFSN 444
            S   + 
Sbjct: 561 LSILMNT 567


>gi|254441196|ref|ZP_05054689.1| threonyl-tRNA synthetase [Octadecabacter antarcticus 307]
 gi|198251274|gb|EDY75589.1| threonyl-tRNA synthetase [Octadecabacter antarcticus 307]
          Length = 649

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 145/443 (32%), Gaps = 45/443 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W P G      +   +R +Q  
Sbjct: 235 KAHLHMLEEAAKRDHRKLGREMNLF--HMQEEASGQIFWHPNGWLIFTQLQDYMRRKQRA 292

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G +E++ P +    LW +SG ++ + + M  +       R        P +      I+
Sbjct: 293 GGYVEVNTPQVVDRKLWEQSGHWEKFQEHMFIVEVDEEHAREKAVNALKPMNCPCHVQIY 352

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D + F    +    +    
Sbjct: 353 NQGLKSYRDLPVRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIFCTEEQIEVETIAF- 411

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++  LG     ++    P     S E                   D    +   
Sbjct: 412 IALLSEVYQDLGFSDFKVKFSDRPDVRSGSDE-----------------VWDKAEAALLA 454

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                    ++     A Y    +     L D++  + +     ++    F    +    
Sbjct: 455 ATRAAGIEPTLNPGEGAFYGPKLEF---VLTDAIGRDWQCGTHQVD----FVLPER---- 503

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A + G+DG+ H    +    +G+      ++   H GK   W         S+I    
Sbjct: 504 LDANYIGSDGEKHRPVMLHRALLGSFERFIGILIEEHAGKLPFWLAPRQVVVASII---- 559

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++ A L+  G     D   E+I  +     L   P+ +  G++ V D  V
Sbjct: 560 --SDADDYVREVVAALNAKGVRAEADIRNEKINYKVREHSLGKVPVILACGAREVEDRTV 617

Query: 417 EIKHRLTGIREDMSLEEVINYAS 439
            ++          +L  +++   
Sbjct: 618 SVRRLGEKQTSVTTLAAIVDDLQ 640


>gi|126735278|ref|ZP_01751024.1| threonyl-tRNA synthetase [Roseobacter sp. CCS2]
 gi|126715833|gb|EBA12698.1| threonyl-tRNA synthetase [Roseobacter sp. CCS2]
          Length = 648

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 139/442 (31%), Gaps = 45/442 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W P G      +   +R +Q  
Sbjct: 234 KAHLHMLEEAAKRDHRKLGREMNLF--HMQEEAPGQVFWHPNGWTVYTELQDYVRRKQRA 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIF 118
               E++ P +    LW  SG +D Y + M  +    + A         P +      +F
Sbjct: 292 GDYREINTPQVVDRKLWEASGHWDKYHEHMFVVEVEEEHAKEKAINALKPMNCPCHVQVF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D + F    +       + 
Sbjct: 352 NQGLKSYRDLPLRLAEFGSCARYEPSGALHGIMRVRGFTQDDGHIFCTEEQIETEC-ARF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 I+  LG +   +   + P     S E                   D    +   
Sbjct: 411 INFLADIYKDLGFEDFEIAFATRPEKRVGSDE-----------------SWDHVEGALEA 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                     +     A Y    D +   L D+L    +     ++       G      
Sbjct: 454 AIKSTGRDFRLEPGDGAFYGPKLDFY---LTDALGRTWQCGTFQVDPNLPERLG------ 504

Query: 298 MSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             AT+ G DG  H    +    +G+      ++   H GK   W         +++    
Sbjct: 505 --ATYIGQDGSKHRPFMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVATIV---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++   L  VG     D   E+I  +     +   P+ + +G++ V +  V
Sbjct: 559 --SDADDYAMEVVNALKAVGVRAEADLRNEKINFKVREHSVGKVPVILALGAREVEEKTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYA 438
             +          SL E++   
Sbjct: 617 TARRLGENKTSVTSLTEIVAEL 638


>gi|15639823|ref|NP_219273.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189026061|ref|YP_001933833.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
 gi|6094415|sp|O83809|SYT_TREPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238689347|sp|B2S475|SYT_TREPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|3323150|gb|AAC65804.1| threonyl-tRNA synthetase (thrS) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018636|gb|ACD71254.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
          Length = 592

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 140/442 (31%), Gaps = 38/442 (8%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +  E  R D       L L    + + + G   W P G      +   +R   +  G
Sbjct: 182 YLRMQDEAKRRDHRKLGPALGLF--HLDEENPGQVFWHPEGWTLYVAIQQYLRRVMHEDG 239

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW  SG +D Y   M  L +   ++    P +     +IF+   +SY
Sbjct: 240 YAEVHTPFVMPQSLWERSGHWDKYRANM-YLTEGEKRSFALKPMNCPGHVEIFKQKTRSY 298

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      GVMR R F+  DA+ F    + +              
Sbjct: 299 RDLPLRLSEFGSCTRNEPSGSLHGVMRVRGFVQDDAHIFCTEAQIASEV----------- 347

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                 +   + A      G    +  V   T   Q        D    +     +    
Sbjct: 348 -----TRFCRLLARVYADFGFAQEQIRVKFSTRPEQRIGDDATWDRAERALAEACEAAGL 402

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D+L    +     ++        +     ++A + G
Sbjct: 403 SYEHAPGEGAFYGPKLEF---ALIDTLEREWQCGTIQVDY----QLPSC--ERLNAEYVG 453

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D + H    +    IG++     ++   + G    W   V    I +           +
Sbjct: 454 EDNQRHMPVILHRTVIGSLERFIGILIEHYGGAFPPWLAPVQAVVIPVAP------AFLE 507

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L      V  D   E++ ++   A     P  +IVG + +   +V ++ R T
Sbjct: 508 YAQHVARELCARSLRVQADVSAERMNAKIRTAQTQKVPYLLIVGERELRAQQVAVRPR-T 566

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G +  M L     +   +    
Sbjct: 567 GPQHSMGLSAFSTFLLAKLETR 588


>gi|315164831|gb|EFU08848.1| prolyl-tRNA synthetase [Enterococcus faecalis TX1302]
          Length = 572

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 106/235 (45%), Positives = 146/235 (62%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  + C     D+    E
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTI-CYSTESDYAANLE 234



 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 107/187 (57%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +  D  P+   V    +GIE+GHIF  GT+YS  M AT    +G++  V MG Y
Sbjct: 382 EDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E + D +GI WP  +APF + ++ +   D+      +++ A +++ G 
Sbjct: 442 GIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+ + 
Sbjct: 502 EVLVDDRNERAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELEST 560

Query: 438 ASHRFSN 444
            S   + 
Sbjct: 561 LSILMNT 567


>gi|320534417|ref|ZP_08034899.1| threonyl-tRNA synthetase [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320133364|gb|EFW25830.1| threonyl-tRNA synthetase [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 678

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 72/456 (15%), Positives = 140/456 (30%), Gaps = 45/456 (9%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L +   RD      +L L +    +   G+  + P G      +   + +    
Sbjct: 241 KAYQTRLAEAAKRDHRRLGAELDLYS-FPEEIGPGLVVFHPKGAMLRHQIEQYVVDRHLD 299

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHE 111
            G   +  P +    L+  SG    Y   M                 +  +       + 
Sbjct: 300 YGFDFVHTPEISKGGLFHTSGHLPYYADTMFPPMLADEERDAEGNITKAGQEYYLKAMNC 359

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   +FRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +  
Sbjct: 360 PMHNLVFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFTQDDSHTYCTPDQAG 419

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           +         +L I    GL    +   +    G    +FI            S    D 
Sbjct: 420 EE-IRAQIDFFLSILKAFGLTDFHLELSTRDEEGAKKDKFI-----------GSDADWDA 467

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +     D             A Y       + ++ D++    ++S    +       
Sbjct: 468 ATQALQNACDASGLEVVPDPGGAAFYGPKV---SVQVKDAIGRTWQMSTIQYDFNQP--- 521

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
                      +  ADG       + S  +G++     V+   + G    W   ++P ++
Sbjct: 522 -----ERFDLEYTAADGTHQRPIMIHSAKLGSVERFIGVLTEHYAGAFPTW---LSPVQV 573

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            LI +    +      + + ARL   G  V  D   ++ G +   A     P  +I G +
Sbjct: 574 RLIPVA---EAFDTYVDDVAARLRAKGVRVEVDHSDDRFGKKIRNASKDKIPFTLIAGGE 630

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
                 V  + R       + +EE + +        
Sbjct: 631 DAEAGAVSFRFRDGQQTNGVPVEEAVTHIVSVIDAR 666


>gi|329945633|ref|ZP_08293366.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528636|gb|EGF55601.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 683

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 71/456 (15%), Positives = 141/456 (30%), Gaps = 45/456 (9%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L +   RD      +L L +    +   G+  + P G      +   + +    
Sbjct: 246 KAYQTRLAEAAKRDHRKLGAELDLYS-FPEEIGPGLVVFHPKGAMLRHQIEQYVVDRHQD 304

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHE 111
            G   +  P +    L+  SG    Y   M                 +  +       + 
Sbjct: 305 YGFDFVHTPEISKGGLFHTSGHLPYYADTMFPPMLADEERDGQGNITKAGQEYYLKAMNC 364

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +  
Sbjct: 365 PMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFTQDDSHTYCTPEQAG 424

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           +         +L I    GL    +   +    G    +FI            S      
Sbjct: 425 EE-IRAQIDFFLSILKAFGLTDFYLELSTRDEDGAKKDKFI-----------GSDADWAA 472

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +     D             A Y       + ++ D++    ++S    +       
Sbjct: 473 ATRALQDACDASGLEVVPDPGGAAFYGPKV---SVQVKDAIGRTWQMSTIQYDFNQP--- 526

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
                      +  ADG       + S  +G++     V+   + G    W   ++P ++
Sbjct: 527 -----ERFDLEYTAADGTHQRPIMIHSAKLGSVERFIGVLTEHYAGAFPTW---LSPVQV 578

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            LI +    +   D  + + A+L   G  V  D   ++ G +   A     P  +I G +
Sbjct: 579 RLIPVA---EAFDDYVDDVAAQLRAQGVRVEVDHSDDRFGKKIRNASKDKIPFTLIAGGE 635

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
                 V  + R       ++++E + +        
Sbjct: 636 DAEAGAVSFRFRDGEQTNGVAVKEAVAHIVSVIDAR 671


>gi|32265941|ref|NP_859973.1| threonyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
 gi|73919797|sp|Q7VJ09|SYT_HELHP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|32261990|gb|AAP77039.1| threonyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
          Length = 604

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 165/446 (36%), Gaps = 43/446 (9%)

Query: 2   RRS-KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           ++S K +L  L+E   RD      ++ L T    +   G+  WLP G +   N+  ++ +
Sbjct: 192 KQSLKDYLFTLEEAKKRDHRKLGQEMGLFT-FDEEIGAGLPIWLPKGARLRHNIEHLLTQ 250

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                G   +  P +  +D+W +SG Y +Y + M      +++     P +      +++
Sbjct: 251 ALKERGYEPVRGPEILKSDVWKKSGHYSNYKENM-YFTIIDEQEYGIKPMNCVGHIKVYQ 309

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP  FY+  +  R E      G++R REF   DA+ F +T +      N++ 
Sbjct: 310 SSPRSYRELPLRFYEYGIVHRHERSGVLHGLLRVREFTQDDAHIFCMTSQIKSE-VNQIL 368

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                I +  G         + P     + E                   +    +  + 
Sbjct: 369 DFTKGIMNAFGFHYEM-ELSTRPQKSIGNDE-----------------VWENATAALKSA 410

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            ++      I E   A Y    D+   K+ D+L    +     I++              
Sbjct: 411 LEENHISYQIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQIDMNLP--------ERF 459

Query: 299 SATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             ++          V +    +G+     A++    +  G  +P  +AP ++ LI I   
Sbjct: 460 ELSYTDEHNVQVQPVMIHRAILGSFERFVAILT---EHFGGEFPLFIAPTQVILIPIG-- 514

Query: 358 DQVCRDACEKIYAR-LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   +    +  + +++ G      D  E +  +  +A+    PL V++G+K V    +
Sbjct: 515 -EAQLEYARILRDKIITQSGAYAELMDKNESLSKKIRLAEKQRVPLIVVIGAKEVESKIL 573

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            I+ R    + ++  E  I     + 
Sbjct: 574 AIRDRREKSQYELPEEAFIATLKTKI 599


>gi|255654136|ref|ZP_05399545.1| prolyl-tRNA synthetase [Clostridium difficile QCD-23m63]
 gi|296449825|ref|ZP_06891592.1| proline--tRNA ligase [Clostridium difficile NAP08]
 gi|296877889|ref|ZP_06901909.1| proline--tRNA ligase [Clostridium difficile NAP07]
 gi|296261312|gb|EFH08140.1| proline--tRNA ligase [Clostridium difficile NAP08]
 gi|296431086|gb|EFH16913.1| proline--tRNA ligase [Clostridium difficile NAP07]
          Length = 571

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 115/258 (44%), Positives = 162/258 (62%), Gaps = 1/258 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F+P L+E P DAEI SH+LM+R+GMI + + G+Y+ LP+G +    +  IIREE
Sbjct: 1   MKMSKMFMPTLKEVPADAEITSHQLMVRSGMIKKMTSGVYNQLPMGLRVFKKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+    E+    L  ++LW ESGR+ + G+EM RL DR ++    GPTHEE  TDI R 
Sbjct: 61  LNKKDCQEILCAALLPSELWKESGRWTAMGEEMFRLKDRTEREYCLGPTHEEAFTDIIRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ+K+RDE RPRFGVMR++ F MKDAYSFD+  +G   SY  MF +
Sbjct: 121 EITSYKQLPLNLYQIQVKYRDERRPRFGVMRTKTFTMKDAYSFDVDDKGLDKSYQDMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+ IF R GL++ P++A+SG IGG  S EF+V ++ GE +V       D+    E  +  
Sbjct: 181 YVSIFDRCGLENSPVQADSGAIGGSTSTEFMVKSEVGEDEVVFCSGC-DYAANVERAESC 239

Query: 241 DIISLNSIVEQWTAPYAA 258
           ++ S    +++    Y  
Sbjct: 240 NVASEKEEMKELEEVYTP 257



 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 94/169 (55%), Gaps = 3/169 (1%)

Query: 255 PYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 D  N +  D           ARG+EVGHIF  GTKYS  M+A F   DGK   +
Sbjct: 375 FEGVVGDFRNVQEGDKCIVCGKPLEIARGVEVGHIFKLGTKYSESMNANFIDRDGKSKPI 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R  AA+IE  +D KGIIWP SVAP+ + ++     ++      EKIY  L
Sbjct: 435 VMGCYGIGVERTAAAIIEQHNDEKGIIWPLSVAPYHVVIVPANMKNEEQISIAEKIYNDL 494

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             +G +V  DD  E+IG +F  ++L+G P+++ VG K +++ KVE K R
Sbjct: 495 QAMGVEVLLDDRDERIGVKFNDSELIGIPMRITVG-KNINEGKVEFKFR 542


>gi|50842977|ref|YP_056204.1| prolyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289428734|ref|ZP_06430417.1| proline--tRNA ligase [Propionibacterium acnes J165]
 gi|295131048|ref|YP_003581711.1| proline--tRNA ligase [Propionibacterium acnes SK137]
 gi|81826419|sp|Q6A7L9|SYP_PROAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|50840579|gb|AAT83246.1| prolyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289158132|gb|EFD06352.1| proline--tRNA ligase [Propionibacterium acnes J165]
 gi|291375052|gb|ADD98906.1| proline--tRNA ligase [Propionibacterium acnes SK137]
 gi|332675928|gb|AEE72744.1| proline--tRNA ligase [Propionibacterium acnes 266]
          Length = 585

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 107/272 (39%), Positives = 156/272 (57%), Gaps = 6/272 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE 
Sbjct: 4   RMSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +  
Sbjct: 64  ASIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y
Sbjct: 124 YSSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D
Sbjct: 184 IRIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPD 243

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            + ++        P A   D  + +  +SL  
Sbjct: 244 PLPID------GLPEAEVVDTPDARTIESLVR 269



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              DV   +  D  P+   +   ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 399 GVIDVAEIREGDPAPDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMG 458

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ 
Sbjct: 459 SYGLGVSRAVAAIAEGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEA 517

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 518 GLEVLLDDRKASPGVKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 576

Query: 436 NYASHRFS 443
                   
Sbjct: 577 CAVLKEVR 584


>gi|166365884|ref|YP_001658157.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|166088257|dbj|BAG02965.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
          Length = 599

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 152/442 (34%), Gaps = 39/442 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 187 EEALKRDHRKLGKELGLFI-FSDSVGPGLPLWTPKGTLIRSLLEDFLKKEQLKRGYLPVV 245

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  +   ++++       +  P +      I++S ++S
Sbjct: 246 TPHIARVDLFKISGHWQKYKEDMFPMMADDEESAGKEIGFVLKPMNCPFHIQIYKSDLRS 305

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    +    +R E     G +        D     +TPE     +  +    L +
Sbjct: 306 YRELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPEQLDKEFLSVVDLILTV 365

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F  L LK+   R                  D    +   S +  +    +       +  
Sbjct: 366 FKSLQLKNFKARLS--------------FRDPESDKYIGSDEAWEKAQSAIRKAVQTLGM 411

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    D       D+L    ++    ++                  +  
Sbjct: 412 DYFEAPGEAAFYGPKLDFI---FQDALEREWQLGTVQVDYNLP--------ERFELEYVA 460

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +     G++  +  ++    +     +P  +AP +I L+ +        D
Sbjct: 461 EDGNRKRPVMIHRAPFGSLERLIGILI---EEYAGDFPLWLAPVQIRLLPV---SDTQLD 514

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++ A++  +G     D  GE++G     A+    P+  +VG+K +  + + I+ R T
Sbjct: 515 YAKEVTAKMQLLGIRAETDTSGERLGKMIRNAETAKIPVMAVVGAKEMESNSLSIRTRAT 574

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +S+EEV+        N+
Sbjct: 575 GDLGVISVEEVVAKLESAIQNH 596


>gi|312143669|ref|YP_003995115.1| prolyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
 gi|311904320|gb|ADQ14761.1| prolyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
          Length = 568

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 116/277 (41%), Positives = 167/277 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  +LP L+E+P +A+I SHKLMLR G++  HS GIYS+LPLG + +  +  I R+ 
Sbjct: 1   MRMSNLYLPTLKEDPAEADITSHKLMLRAGLMRNHSAGIYSYLPLGYRVIKKIENITRKH 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA E+ +P LQ+A +W +S R+D +G  M+RL DR D+    GPTHEEV+TD+ + 
Sbjct: 61  MDASGAQEVLLPILQTAQIWKDSKRWDKFGPLMMRLRDRKDREYCLGPTHEEVVTDLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY++LP   YQIQ K RDE+RPRFGVMR REF+MKDAYS D+  EG   SY  M+ +
Sbjct: 121 EIRSYKDLPLNLYQIQTKVRDEIRPRFGVMRGREFIMKDAYSLDIDYEGLDKSYQAMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y + F   GL ++ + A++G +GG  SHEF+VLAD+GE QV                   
Sbjct: 181 YEKTFAECGLDAVAVEADTGAMGGKDSHEFMVLADSGEDQVAFCDSCGYAANVERAVANK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           +++      E           +   + +  LP  + +
Sbjct: 241 ELLDFEEENEMEKIHTPDIKTIAELEAYLDLPAARMI 277



 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 110/214 (51%), Gaps = 1/214 (0%)

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +   N       ++N   +     +A    V + +      E K     GIEVGHIF  
Sbjct: 354 AVTGANQKDYHFKNVNIERDFQVEEFADLRLVKDGESCLQCTEGKLNIKAGIEVGHIFKL 413

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           GTKYS  M A +   +G+   + MGSYGIG  R+VAA IE ++D  GIIWP ++AP++I 
Sbjct: 414 GTKYSENMGANYLDENGRTQPIVMGSYGIGITRLVAAAIEQNNDEYGIIWPKAIAPYQII 473

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ +  +D+   +  E+IY  L   G +V  DD  E+ G +F  ++L+G PL++ +GS+ 
Sbjct: 474 ILALG-NDEAVAEKSEEIYQELEAEGWEVLLDDRKERAGVKFNDSELIGIPLRLTIGSRS 532

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + + ++E   R    +  + ++ +    +   + 
Sbjct: 533 LENGEIEAMIRENNQKSKIKIDNLKEKTAELMAE 566


>gi|328907631|gb|EGG27395.1| proline--tRNA ligase [Propionibacterium sp. P08]
          Length = 585

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 105/253 (41%), Positives = 151/253 (59%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + L  + AI REE 
Sbjct: 4   RMSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVLRRIEAICREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +  
Sbjct: 64  AGIGAQEVSFPALLASDPYKETGRWAEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y
Sbjct: 124 YSSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDDAYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S D     + +      D
Sbjct: 184 IRIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVHSADGYAANVEAVRIAAPD 243

Query: 242 IISLNSIVEQWTA 254
            + ++ + E    
Sbjct: 244 PLPIDGLPEAEVV 256



 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 4/170 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              DV   +  D  P+   +   +RGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 399 GVIDVAEIREGDPAPDGSGELHLSRGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMG 458

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E + D KG++WP  VAPF + ++       +  +   +I + L++V
Sbjct: 459 SYGLGVSRAVAAIAEGTCDEKGLVWPREVAPFDVQVLATGKGTDILDE-ATRIASELAEV 517

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           G +V  DD     G +FA +++LG P  V+VG + + D  VE++ R TG 
Sbjct: 518 GLEVLLDDRKASPGVKFADSEILGVPTSVVVG-RGLKDGLVEVRDRATGE 566


>gi|254517592|ref|ZP_05129648.1| threonyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226911341|gb|EEH96542.1| threonyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 645

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 151/440 (34%), Gaps = 35/440 (7%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD      +L + T    +  +G+   +P G K +  +   + +E+ + G +  
Sbjct: 235 LEEAKKRDHNKLGRELKIFTT-DEKVGQGLPLIMPKGAKIVQLLQRWVEDEEEKRGYVFT 293

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
             P++   DL+  SG +D Y   M      D++ + M   P        I+ +   SYR 
Sbjct: 294 KTPSMSKNDLFKVSGHWDHYKDGMFVLGDEDKDPEVMALRPMTCPFQYTIYNAEQHSYRE 353

Query: 128 LPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP  + +    +R+E      G++R R+F + D +     P+  +  +         I  
Sbjct: 354 LPIRYAETSTLYRNEASGEMHGLIRVRQFTLSDGHIVCR-PDQIEEEFKGCVELINHIM- 411

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
                       +  I GD+S  F         +   + +  +          D +    
Sbjct: 412 -----------STLGIDGDISFRFSKWDPNNTDKYINNPEAWEETQVLMKAILDHLGIDY 460

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    D+  + +     +   +    I+           +     T+   D
Sbjct: 461 VEAEGEAAFYGPKLDIQFKNVH---GKEDTIITIQIDFAL--------AERFDMTYIDKD 509

Query: 307 GKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           G      +     IG      A++    +     +P  +AP +  ++ I        D  
Sbjct: 510 GNKKRPYIIHRSSIGCYERTLAMLI---EKYAGAFPTWLAPTQAIVLPISDK---YNDYA 563

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E I       G  +  D   E+IG +   A L   P  ++VG K  ++++  ++ R  G 
Sbjct: 564 ESIVKDFKDSGIRITADYRSEKIGYKIREARLERIPYILVVGEKEAANNEASVRSRKNGE 623

Query: 426 REDMSLEEVINYASHRFSNN 445
              + + E+ N      +N 
Sbjct: 624 EGALPVSELKNRLILEIANK 643


>gi|116670864|ref|YP_831797.1| threonyl-tRNA synthetase [Arthrobacter sp. FB24]
 gi|166223319|sp|A0JXC7|SYT_ARTS2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116610973|gb|ABK03697.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Arthrobacter
           sp. FB24]
          Length = 669

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 67/450 (14%), Positives = 125/450 (27%), Gaps = 47/450 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L +    +   G+  + P G      +    R+     G   
Sbjct: 252 RIAEAERRDHRKLGAELDLFS-FPDELGSGLPVFHPKGGIIRKAMEDYSRQRHVDAGYDF 310

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTD 116
           +  P +    L+  SG  D Y + M                 +  +     P +  +   
Sbjct: 311 VYTPHITKGHLYEVSGHLDWYKEGMFPAMHIDAELNEDGTVRKPGQDYYLKPMNCPMHNL 370

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP   ++    +R E      G+ R R     DA+ +    +       
Sbjct: 371 IFRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYCTREQMKDEL-T 429

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                 L +    GL    +   +                  E +        D    + 
Sbjct: 430 TTLNFVLGLLKDYGLDDFYLELST----------------KNEDKFVGDDATWDEATRTL 473

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
               +             A Y       + +  D+L    ++S   ++    F    ++ 
Sbjct: 474 AEVAEASGLELIPDPGGAAFYGPKI---SVQAKDALGRTWQMSTIQLD----FNLPERFE 526

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
           L   A       +   V +     G++     V+   + G    W   V    I +    
Sbjct: 527 LEFQAA---DGTRQRPVMIHRALFGSVERFMGVLTEHYAGAFPAWLAPVQVVGIPVA--- 580

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   D    +  +L  VG     D   ++   +   A     P  +I G +      
Sbjct: 581 ---EAFNDYMFDVVDQLKAVGIRAEVDISSDRFPKKIRTASKDKIPFVLIAGGEDAEAGA 637

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  + R       + + E +        N 
Sbjct: 638 VSFRFRDGSQDNGVPVAEAVQRIVEAVRNR 667


>gi|271963639|ref|YP_003337835.1| proline--tRNA ligase [Streptosporangium roseum DSM 43021]
 gi|270506814|gb|ACZ85092.1| Proline--tRNA ligase [Streptosporangium roseum DSM 43021]
          Length = 580

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 104/244 (42%), Positives = 144/244 (59%), Gaps = 1/244 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ SHKL++R G + + + GIYSWLPLG+  L+NV  I+REE 
Sbjct: 4   RMSSLFLRTLRDDPADAEVPSHKLLVRAGYVRRVAPGIYSWLPLGKMVLENVTRIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           NR G  E+  P L   + +  +GR+  YG  + RL DR     + GPTHEE+ TD+ +  
Sbjct: 64  NRMGGQEVLFPALLPREYYEATGRWTEYGDTLFRLQDRKGADYLLGPTHEEMFTDMVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFDL  +G K SY +   +Y
Sbjct: 124 YSSYKDYPVTLYQIQTKYRDEARPRAGILRGREFVMKDSYSFDLDDDGLKRSYEQHRETY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +R F RLG+      A SG +GG  S EF+  A TGE           +   +E      
Sbjct: 184 IRTFDRLGISYKICFATSGAMGGSASEEFLAPAATGEDTFVACHQC-GYAANAEAVTTPA 242

Query: 242 IISL 245
             ++
Sbjct: 243 PAAI 246



 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 90/184 (48%), Gaps = 6/184 (3%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D+ P         RGIE+GHIF  G KY+        G DGK   V MG
Sbjct: 394 GTIEAAEVRAGDACPVCGSGLSIDRGIEIGHIFQLGRKYADAAKLDALGPDGKPIRVTMG 453

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VA + E  HD  G++WP  VAP  +    +        +A  ++   L   
Sbjct: 454 SYGVGVSRAVAVLAEQRHDELGLVWPREVAPVDVH--VVGTGKDGQIEAANRLAEDLQAR 511

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V  DD  G   G +F  A+LLG P  +I+G + ++    E++ R+TG++E++ ++E 
Sbjct: 512 GLRVLVDDRAGVSPGVKFKDAELLGMPTILIIG-RGLAQGVAELRDRVTGVKEEIPIDEA 570

Query: 435 INYA 438
            +  
Sbjct: 571 ADRV 574


>gi|296139628|ref|YP_003646871.1| threonyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
 gi|296027762|gb|ADG78532.1| threonyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
          Length = 677

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 61/455 (13%), Positives = 127/455 (27%), Gaps = 50/455 (10%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      +L L +        G+  + P G      +    R+     G
Sbjct: 243 YLELLAEAEKRDHRRLGAELDLFS-FPDALGSGLPVFHPKGGIIRKELEEYSRQRHVDAG 301

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              ++ P L  + L+  SG  D Y   M                 +  +     P +  +
Sbjct: 302 YEFVNTPHLTKSALYEVSGHLDWYKDGMFPAMHLDAEYDDEGNVTKPGQDYYVKPMNCPM 361

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF +  +SYR LP   ++    +R E      G+ R R     DA+ +    +    
Sbjct: 362 HNLIFDARGRSYRELPLRLFEFGSVYRYEKSGVIHGLTRVRGMTQDDAHIYCTKEQMHGE 421

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                    L +    GL    +   +                    +     D  +   
Sbjct: 422 L-TTTLKFVLSLLKDYGLDDFYLELST----------------KNPEKYVGDDDVWEEAT 464

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +     +             A Y       + +  D+L    ++S   ++    F    
Sbjct: 465 KTLQQVAEASGLDLVPDPGGAAFYGPKI---SVQAKDALGRTWQMSTIQLD----FNLPE 517

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       +   DG       +     G++     V+   + G    W        I +
Sbjct: 518 RF----ELEYTAPDGTKQRPVMIHRALFGSIERFFGVLTEHYAGAFPAWLAPEQVVGIPV 573

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                  +   D  E +  +L   G     D   +++  +         P  ++ G +  
Sbjct: 574 A------EQFGDHLETVIRKLRAEGIRAHVDHSDDRMQKKIRNHTTQKVPFMLLAGERDR 627

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
               V  + R      ++ +++ +          R
Sbjct: 628 EAGAVSFRFRDGTQVNEVPVDDAVQRIVEWVRARR 662


>gi|269219602|ref|ZP_06163456.1| proline--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210844|gb|EEZ77184.1| proline--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 594

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 138/235 (58%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  F+  L+E+P DAE+ASH+L++R G I + + GIY+WLPLG + L  +  I+REE  
Sbjct: 1   MSSLFVRTLREDPADAEVASHRLLVRAGYIRRAAPGIYTWLPLGLRVLRKIERIVREEME 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G+ E+  P L   + +  SGR+  YG  + +L DR +   +  PTHEE+ T + +   
Sbjct: 61  AAGSQEVHFPALLPREPYEASGRWSDYGPTLFKLKDRKESDYLLAPTHEELFTLLVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP + YQIQ K+RDE RPR GV+RSREF+MKDAYSFD+   G   SY  M  +Y 
Sbjct: 121 SSYKDLPLSLYQIQTKYRDEARPRAGVIRSREFVMKDAYSFDVDEAGLDASYAAMRSAYQ 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           RIF RLGL  +   A SG +GG  S EF+   + GE     S         +  T
Sbjct: 181 RIFARLGLPFVICSAVSGAMGGSRSEEFLFPCEIGEDAFVRSAGGYAANTEAVTT 235



 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/188 (34%), Positives = 96/188 (51%), Gaps = 6/188 (3%)

Query: 260 SDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +    +  D  P+       A+GIEVGHIF  G KY+  +  +    +GK   V MGSY
Sbjct: 404 IEAAEVRAGDEAPDGSGPLEIAKGIEVGHIFQLGRKYAKALGLSVLDENGKSRTVTMGSY 463

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  RV+AA+ E +HDG+G++WP SVAP  + ++     D     A E+I A L   G 
Sbjct: 464 GIGITRVLAALAEENHDGRGLMWPASVAPAHVHIVAAG-KDDALYAAAEEIAAGLEADGV 522

Query: 378 DVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +V  DD      G +FA  +LLG P  V+VG + +++  VEI+ R  G   +  +E+   
Sbjct: 523 EVLLDDRRKVSAGVKFADYELLGVPFGVVVG-RGLAEGLVEIRDRA-GETIEAPVEQARE 580

Query: 437 YASHRFSN 444
                  +
Sbjct: 581 RIGELVRS 588


>gi|317969695|ref|ZP_07971085.1| threonyl-tRNA synthetase [Synechococcus sp. CB0205]
          Length = 590

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 134/439 (30%), Gaps = 36/439 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+Y     +   RD       L L + +  +   G+  W P G +    +  + RE   
Sbjct: 173 LSEYKRRQEEAKRRDHRRIGTDLDLFS-IEDEAGAGLVFWHPRGARMRLLIENLWRELHF 231

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +    LW  SG  D Y + M      +++     P +       + S +
Sbjct: 232 NAGYELLYTPHVADISLWKTSGHLDFYSESMFGPMQVDEREYQLKPMNCPFHVLTYASTL 291

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP  + ++   +R E      G+MR R F   DA+ F L  + S      +    
Sbjct: 292 RSYRELPIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCLPEQISDE-ILAILDLT 350

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +I      ++  +   + P                           D          + 
Sbjct: 351 EQILSTFDFRNYEINLSTRPEKS-----------------IGEDAVWDLATQGLIEALER 393

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D++    + S   ++    F    ++ L   A 
Sbjct: 394 KGWAYKIDEGGGAFYGPKIDL---KIEDAIGRMWQCSTVQLD----FNLPERFDLEYVAA 446

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 +   +   +      R    + E+                              
Sbjct: 447 --DGSRQRPIMIHRAIFGSLERFFGIMTENYAGDFPFWLAPEQIRLLPVT-------DEV 497

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E + A L   G     D  G+++G      + +  P+  ++G+K      + ++ R
Sbjct: 498 TGYAESVAAALKAAGVRASVDHSGDRLGKLIRNGEQMKIPVLGVIGAKEAEGGTISLRSR 557

Query: 422 LTGIREDMSLEEVINYASH 440
             G    + LE V+  A  
Sbjct: 558 REGDLGSIELETVVAAAKE 576


>gi|161344762|ref|NP_441328.2| prolyl-tRNA synthetase [Synechocystis sp. PCC 6803]
 gi|114152887|sp|P73942|SYP_SYNY3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 603

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 114/240 (47%), Positives = 154/240 (64%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL++R G I +   G+Y++LPL  + L+ V  I++EE
Sbjct: 1   MRLSQMLFVTLRDDPADAEIPSHKLLVRAGFIRRLGSGLYAYLPLIWRVLEKVKRIVQEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            NRTGA E  +P LQ ++LW  SGR+D+Y +    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNRTGAQECLLPQLQPSELWKMSGRWDTYTESEGIMFALRDRLERELGLGPTHEEVITAI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       K +Y  M
Sbjct: 121 AKEMIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEASLKATYGAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  IF R GL   P+ A+SG IGG  S EF+VLAD GE ++  ++D + +    E  
Sbjct: 181 DQAYRNIFSRCGLDFRPVDADSGAIGGSGSQEFMVLADAGEDEILYTEDGL-YSANVEKA 239



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 1/175 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P  +  +ARGIEVGHIF  GTKYS  M ATF    G++  + MG YGIG  R+  A +E 
Sbjct: 427 PTGELKTARGIEVGHIFQLGTKYSQAMGATFTNEQGEEKPLVMGCYGIGVSRLAQAAVEQ 486

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GIIWP ++AP+++ ++     D+      E+IY        DV  DD  E+ G +
Sbjct: 487 SYDKDGIIWPTAIAPYEVVIVVPNVGDEEQMQVAEQIYTEFQAAEVDVLLDDRNERAGVK 546

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           F  ++L+G P +V+ G K +   ++E+  R     +++++  V+   +      +
Sbjct: 547 FKDSELIGIPYRVVTG-KSLKQGQLEVVKRADKSVQNLAIAAVVPTLTAWIKAEK 600


>gi|1653092|dbj|BAA18008.1| proline-tRNA ligase [Synechocystis sp. PCC 6803]
          Length = 617

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 114/240 (47%), Positives = 154/240 (64%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+++P DAEI SHKL++R G I +   G+Y++LPL  + L+ V  I++EE
Sbjct: 15  MRLSQMLFVTLRDDPADAEIPSHKLLVRAGFIRRLGSGLYAYLPLIWRVLEKVKRIVQEE 74

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            NRTGA E  +P LQ ++LW  SGR+D+Y +    M  L DR ++ +  GPTHEEV+T I
Sbjct: 75  MNRTGAQECLLPQLQPSELWKMSGRWDTYTESEGIMFALRDRLERELGLGPTHEEVITAI 134

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  I+SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       K +Y  M
Sbjct: 135 AKEMIRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEASLKATYGAM 194

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  IF R GL   P+ A+SG IGG  S EF+VLAD GE ++  ++D + +    E  
Sbjct: 195 DQAYRNIFSRCGLDFRPVDADSGAIGGSGSQEFMVLADAGEDEILYTEDGL-YSANVEKA 253



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 1/175 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P  +  +ARGIEVGHIF  GTKYS  M ATF    G++  + MG YGIG  R+  A +E 
Sbjct: 441 PTGELKTARGIEVGHIFQLGTKYSQAMGATFTNEQGEEKPLVMGCYGIGVSRLAQAAVEQ 500

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GIIWP ++AP+++ ++     D+      E+IY        DV  DD  E+ G +
Sbjct: 501 SYDKDGIIWPTAIAPYEVVIVVPNVGDEEQMQVAEQIYTEFQAAEVDVLLDDRNERAGVK 560

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           F  ++L+G P +V+ G K +   ++E+  R     +++++  V+   +      +
Sbjct: 561 FKDSELIGIPYRVVTG-KSLKQGQLEVVKRADKSVQNLAIAAVVPTLTAWIKAEK 614


>gi|296117670|ref|ZP_06836254.1| proline--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969401|gb|EFG82642.1| proline--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 585

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 105/283 (37%), Positives = 155/283 (54%), Gaps = 5/283 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P +AE+ SHKL++R G + + + GIYSWLPLG + L  +  ++REE 
Sbjct: 4   RLSELFLRTLREDPAEAEVPSHKLLVRAGYLRRAAPGIYSWLPLGLRTLRKIEDVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L   + +  + R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 64  NAIGGQELLFPALLPREPYELTDRWTEYGDNLFRLKDRKGADMLLGPTHEEMFAQTVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD++ EG   SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFIMKDSYSFDMSDEGLDKSYARHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +IF RLG++    +A SG +GG  S EF+ +++ GE   F      D+    E      
Sbjct: 184 QKIFDRLGIEYAICQATSGAMGGSASEEFLAVSEVGE-DTFVRATDGDYAANVEAVVTPV 242

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
              ++        P A   D  + +  D+L E  R     I+ 
Sbjct: 243 PAEIDYS----NLPEAKEYDTPDSETIDTLVEWARSEGITIDD 281



 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 6/188 (3%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +       D  PE +      RGIE+GHIF  G KY+          +GK     MG
Sbjct: 398 EFVEASEVHEGDPAPEGQGTLTLKRGIELGHIFQLGRKYTQAFDVQILDENGKRAIPTMG 457

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R++A + E  HD KG+ WP  VAP+++ +      D+    A  ++   L K 
Sbjct: 458 SYGIGVSRMMAVLAEQRHDEKGLNWPLDVAPYQVHVAVAN-KDEDATKAGNELVEALDKA 516

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD      G +F  A+LLG P   I+G +   D  +E++ R  G   ++  E +
Sbjct: 517 GVEVLFDDRPKVSPGVKFKDAELLGMPYCAILG-RSFKDGIIELRIRG-GETLEVPAESI 574

Query: 435 INYASHRF 442
           ++    R 
Sbjct: 575 VDELLQRL 582


>gi|270307741|ref|YP_003329799.1| prolyl-tRNA synthetase [Dehalococcoides sp. VS]
 gi|270153633|gb|ACZ61471.1| prolyl-tRNA synthetase [Dehalococcoides sp. VS]
          Length = 569

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 107/252 (42%), Positives = 162/252 (64%), Gaps = 1/252 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +E P DAE  SH+L+LR+GMI Q + G+YS++PL  +++  +  IIR+E
Sbjct: 1   MRYSRLFGKTQREIPSDAETISHQLLLRSGMIAQLTAGVYSFMPLAWRSIQKIENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++G  E+++P LQ  ++W +SGR   +G+ +  L DR D+ ++ GPTHEEV+TD+   
Sbjct: 61  MNKSGCQELAMPVLQPVEIWQQSGREAPFGQTLFHLKDRKDRNLVLGPTHEEVITDLASR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SYR+LP   YQIQ KFRDE RPR G++R REF+MKD YSFD +PEG   SY  M  +
Sbjct: 121 YIQSYRDLPQRLYQIQTKFRDEPRPRGGLIRVREFIMKDMYSFDASPEGLDESYQTMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  ++ R GL+S+ + A+SG IGG  SHEF+++A++GE  +       ++   +E   F 
Sbjct: 181 YESVYRRCGLESMVIDADSGAIGGKASHEFMIVAESGEDSIIYCPKC-NYAANAEKAVFK 239

Query: 241 DIISLNSIVEQW 252
                   ++  
Sbjct: 240 KKTLPKEPLKDL 251



 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/194 (33%), Positives = 96/194 (49%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            + A   A   +  E       +    S RG+EVGHIF  GT  S    A F  A+G  H
Sbjct: 372 DFKADKMADIALAAEGAACPFCDGTFASKRGVEVGHIFKLGTFLSERFGANFTDAEGISH 431

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MG YG+G  R++AA IE +HD KGIIWP  +AP+++ +  +         A EK+YA
Sbjct: 432 PIIMGCYGMGVGRLLAAAIEQNHDEKGIIWPMPIAPYQVYICGLFLDKPAVSQAAEKMYA 491

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G +V +DD     G +F  ADLLG PL++ +  + +    VE+K R     E + 
Sbjct: 492 ELEAQGVEVLFDDRELTAGVKFNDADLLGIPLRLTISPRNLDKGGVELKLRRNKEAELVP 551

Query: 431 LEEVINYASHRFSN 444
           L+ ++        +
Sbjct: 552 LDNIVEKVIATIKS 565


>gi|57234857|ref|YP_181114.1| prolyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
 gi|114152187|sp|Q3Z9I5|SYP_DEHE1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|57225305|gb|AAW40362.1| prolyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
          Length = 569

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 107/252 (42%), Positives = 161/252 (63%), Gaps = 1/252 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +E P DAE  SH+L+LR+GMI Q + G+YS++PL  +++  +  IIR+E
Sbjct: 1   MRYSRLFGKTQREIPSDAETISHQLLLRSGMIAQLTAGVYSFMPLAWRSIQKIENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N++G  E+++P LQ  ++W +SGR   +G+ +  L DR D+ ++ GPTHEEV+TD+   
Sbjct: 61  MNKSGCQELAMPVLQPVEIWQQSGREAPFGQTLFHLKDRKDRNLVLGPTHEEVITDLASR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SYR+LP   YQIQ KFRDE RPR G++R REF+MKD YSFD +PEG   SY  M  +
Sbjct: 121 YIQSYRDLPQRLYQIQTKFRDEPRPRGGLIRVREFIMKDMYSFDASPEGLDESYQTMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  ++ R GL+S+ + A+SG IGG  SHEF+++A++GE  +       ++   +E   F 
Sbjct: 181 YENVYRRCGLESMVIDADSGAIGGKASHEFMIVAESGEDSIIYCPKC-NYAANAEKAVFK 239

Query: 241 DIISLNSIVEQW 252
                    +  
Sbjct: 240 KKTLPKEPPKDL 251



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/194 (34%), Positives = 96/194 (49%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            + A   A   +  E       +    S RG+EVGHIF  GT  S    A F  A+G  H
Sbjct: 372 DFKADKMADIALAAEGAACPFCDGTFASKRGVEVGHIFKLGTFLSERFGANFTDAEGISH 431

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MG YG+G  R++AA IE +HD KGIIWP  +AP++I +  +   +     A EKIY 
Sbjct: 432 PIIMGCYGMGVGRLLAAAIEQNHDEKGIIWPMPIAPYQIYICGLFLDNPAVSQAAEKIYT 491

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G +V +DD     G +F  ADLLG PL++ +  + +    VE+K R     E + 
Sbjct: 492 ELEAQGVEVLFDDRELTAGVKFNDADLLGIPLRLTISPRNLDKGGVELKLRRNKESELVP 551

Query: 431 LEEVINYASHRFSN 444
           LE ++        +
Sbjct: 552 LESIMERVITCIKS 565


>gi|320531911|ref|ZP_08032821.1| prolyl-tRNA synthetase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135880|gb|EFW27918.1| prolyl-tRNA synthetase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 610

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 98/284 (34%), Positives = 151/284 (53%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASH+L++R   + + + G+Y+WLPLG + L  +  I+R+E 
Sbjct: 4   RLSTSFIRTLREDPADAEVASHRLLVRACYVRRAAPGVYTWLPLGLRTLRKIEDIVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L  A+ +  +GR+D YG  + +L DR D   +  PTHEE+ T   +  
Sbjct: 64  DAMGGQEVHFPALLPAEPYQATGRWDDYGPTLFKLRDRKDGDYLLAPTHEEMFTLAVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   +Y     +Y
Sbjct: 124 YSSYKDLPAIVYQIQTKYRDEARPRAGIIRGREFVMKDSYSFDIDDAGLAAAYQAHRDTY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL  + + A +G +GG  S EF+   + GE     S         +  T   +
Sbjct: 184 ERIFTRLGLDYVIVNAMAGAMGGSHSEEFLYPCEIGEDTFVRSSSGYAANAEAVITVVPE 243

Query: 242 IISLNSIVEQWTA--PYAATSDVHNEKLFDSLPENKRVSARGIE 283
            +  + +        P   T D   E   ++ P +   +    +
Sbjct: 244 TVDASGVGPARVVDTPDTPTIDSLVELCNEAYPRSDGRAWTAAD 287



 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 94/189 (49%), Gaps = 4/189 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+       ARGIE+GHIF  G KYS  +  +    +GK   V MG
Sbjct: 415 GTIEAAEVREGDPAPDGSGPLHLARGIEIGHIFELGRKYSQALGLSVLDENGKARVVTMG 474

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+AA+ E++HD KG+ WP  +AP+ + ++     DQ   D   +I + L   
Sbjct: 475 SYGIGVSRVMAALAEANHDDKGLTWPVQIAPYHVQVLATG-KDQAVFDVAGQIASSLDAD 533

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD      G +FA A+LLG P  V+VG     +  VEI+ R TG    +  +  
Sbjct: 534 GVEVLYDDRRKVSAGVKFADAELLGLPYTVVVGRDLAREGTVEIRDRRTGEHRSVPADAA 593

Query: 435 INYASHRFS 443
               S    
Sbjct: 594 ATELSATVR 602


>gi|86749289|ref|YP_485785.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
 gi|86572317|gb|ABD06874.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Rhodopseudomonas palustris HaA2]
          Length = 661

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 136/443 (30%), Gaps = 38/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W   G     ++   +R       
Sbjct: 236 YLKQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHAKGWSIFQSLVGYMRRRL-AGD 292

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M       +     +     P +      IF+ 
Sbjct: 293 YDEVNAPQILDKVLWETSGHWEWYRENMFAAQSAGEDAEDKRWFALKPMNCPGHVQIFKH 352

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + +        +
Sbjct: 353 GLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVFCTEAQLADECMKINDL 412

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                        + ++  + P     + E    A+        +    +      N   
Sbjct: 413 IMSTYSDFGFDGELTVKLSTRPDKRVGTDEMWDHAER-----VMATVLSEIKAQGSNRIK 467

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +I           A Y    +     L D++  + +     ++      FG        
Sbjct: 468 TEI------NPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVDFNLPERFG-------- 510

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +  ADG     V +     G+M     ++     G   +W   V     ++       
Sbjct: 511 AFYIDADGAKKAPVMVHRAICGSMERFIGILIEHFAGNFPLWLAPVQLVVATIT------ 564

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  +++ A   + G  V  D   E+I  +     L   P  ++VG K      V +
Sbjct: 565 SEGDEYAKQVVAAARRAGLRVDIDLRNEKINLKVREHSLAKVPALLVVGKKEAETHSVSV 624

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  +  M   E I      
Sbjct: 625 RRLGSDGQTVMPTAEAIAALVDE 647


>gi|242242546|ref|ZP_04796991.1| prolyl-tRNA synthetase [Staphylococcus epidermidis W23144]
 gi|242233973|gb|EES36285.1| prolyl-tRNA synthetase [Staphylococcus epidermidis W23144]
          Length = 567

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 112/237 (47%), Positives = 160/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWSAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REFLMKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKYRDEKRPRFGLLRGREFLMKDAYSFHSDEASLDATYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +    +  D+    E  
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVY-SNESDYAANIEKA 236



 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/166 (39%), Positives = 99/166 (59%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D  GIIW
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQNNDENGIIW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF I LI I    +  R   +++Y +L     D+ +DD  E+ G +F  +DL+G 
Sbjct: 464 PKSVTPFDIHLITINPKKEDQRTLGDQLYQKLMDS-YDILYDDRKERAGVKFNDSDLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           P++V+VG +   +  VE+K R  G+ E++ ++E+  Y    F N +
Sbjct: 523 PVRVVVGKR-AEEGIVEVKQRFNGLSEEVQIDELETYLQDLFKNIK 567


>gi|227826680|ref|YP_002828459.1| threonyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|259516736|sp|C3MUC7|SYT_SULIM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|227458475|gb|ACP37161.1| threonyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
          Length = 545

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 153/443 (34%), Gaps = 39/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +    D  +   KL L +    +   G+  + P GQ   + + A +RE  +  G
Sbjct: 128 YLTWLEKAEETDHRLIGEKLDLFSFH-EEAGSGLVLFHPKGQTIRNELIAFMREINDSMG 186

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+    +   D+W  SG Y  Y  +++ + +         P +      I++S  ++Y
Sbjct: 187 YQEVYTSHVFKTDIWKISGHYTLYRDKLI-VFNMEGDEYGVKPMNCPAHILIYKSKPRTY 245

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +    +R E +   +G++R R F+  D + F    +  +     +  +    
Sbjct: 246 RDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVW 305

Query: 185 FHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                    I     + P     S E                   +    +  +   +  
Sbjct: 306 HKFGFKDDDIKPYLSTRPDESIGSDE-----------------LWEKATNALISALQESG 348

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E+  A Y    D    ++ DSL    ++S   ++    F    ++       + 
Sbjct: 349 LKFGIKEKEGAFYGPKIDF---EIRDSLGRWWQLSTIQVD----FNLPERF----KLEYI 397

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG K   V +     G++    A++     GK   W   ++  ++ ++ I        
Sbjct: 398 DKDGIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTW---LSSVQVRVLPIT---DEVN 451

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   + K       D  GE +  +   A   G P  +IVG K  S+  V ++ R 
Sbjct: 452 EYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRARG 511

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                ++  E+ +          
Sbjct: 512 NIEVRNVKFEKFLELLITEIGQR 534


>gi|255327209|ref|ZP_05368284.1| threonine--tRNA ligase [Rothia mucilaginosa ATCC 25296]
 gi|255295827|gb|EET75169.1| threonine--tRNA ligase [Rothia mucilaginosa ATCC 25296]
          Length = 677

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 70/439 (15%), Positives = 134/439 (30%), Gaps = 32/439 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L +        G+    P G      +   +R    + G   
Sbjct: 256 RIAEAERRDHRRLGRELDLFS-FPKNIGPGLPVIHPKGGVIKREMEDYVRTRHIQEGFQY 314

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +S P +   DL+  SG    Y   M    + ++        +  +  +I+RS  +SYR L
Sbjct: 315 VSTPHISKEDLFYTSGHLPYYADGMFPPMELDNGHYRLKAMNCPMHNEIYRSRGRSYREL 374

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  F++    +RDE      G+ R R     D++S+    +        +    L +   
Sbjct: 375 PLRFFEFGTVYRDEKSGVLQGLTRVRMITQDDSHSYVTKEQAPDE-VRHLLKFMLSLLED 433

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G+    +   +    GD   +FI   +             +           +      
Sbjct: 434 FGMTDFYLELSTRDTEGDKKDKFIGTDEQ-----------WEAATAVLEQVAKETGLELV 482

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                 A Y       + +  D++    ++S    +      FG          ++ ADG
Sbjct: 483 PDPGGAAFYGPKI---SVQAKDAIGRTWQMSTVQYDFNQPSRFG--------LEYQAADG 531

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                  + S   G++     V+   + G    W   V    + +       +   D   
Sbjct: 532 TVQEPVMIHSAKFGSIERFLGVLTEHYAGAFPAWLAPVQVIGVPVA------EAFNDYMT 585

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +I  +L   G  V  D   ++   +   A     P  +I G +      V  + R     
Sbjct: 586 EIADKLRAHGVRVEVDYGSDRFTKKIRTASTEKVPFILIAGGEDAEHGAVSFRFRGNKQE 645

Query: 427 EDMSLEEVINYASHRFSNN 445
             + ++E +        N 
Sbjct: 646 NGVPVDEAVARIVEHIRNR 664


>gi|156740370|ref|YP_001430499.1| threonyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
 gi|156231698|gb|ABU56481.1| threonyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
          Length = 595

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 134/444 (30%), Gaps = 38/444 (8%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      +L L          G+  + P G+     + + +RE Q R G
Sbjct: 184 YLHRLEEAKRRDHRRIGKELGLFY-FSEDIGPGLPLFTPKGEMLRHLMESYVREVQTRYG 242

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEE-VMTDIFRSHIK 123
              +    +    L+ +SG Y++Y + M     +  +      P +    MT      I 
Sbjct: 243 YQHVWTGHIVKETLYKKSGHYEAYRENMFPPMIEDEEHVYRLKPMNCPSHMTLYKEMGIH 302

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +    +R E R    G+ R R     D + F   P+  +  +        
Sbjct: 303 SYRDLPLRFAEFATLYRYEERGTLTGLTRVRALTQDDCHIFCR-PDQIEEEFGLALRLIR 361

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +       +  +R      GG                     +  D    +  T  D  
Sbjct: 362 EVLETYRFTNYRVRLSLRGEGGK---------------YIADDEAWDLAERALRTALDHY 406

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y   +D       D L    ++S   ++       G          +
Sbjct: 407 SVQYEEAPGEAAIYGPKADFL---AHDVLGREWQLSTIQVDFIQPRRLG--------LEY 455

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG+     +      G       V+     G   +W        +  + I   D+  
Sbjct: 456 IAEDGQPRTPVVLHRAVTGTTERFMGVLIEHFAGAFPLWLA-----PVQAVVIPISDERH 510

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                 +  +L+  G  V  D   E++ ++   A L   P  +I+G +      V ++ R
Sbjct: 511 GAYAADVGRQLTAAGLRVEVDLSRERMQAKIRQAQLQKIPYMLIIGDREQHAGAVAVRCR 570

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + +   I  A       
Sbjct: 571 SGEDLGAVPVAAFIARARAEIEAK 594


>gi|291004232|ref|ZP_06562205.1| prolyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
          Length = 581

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 98/221 (44%), Positives = 136/221 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SH+L++R G + +   GIYSWLPLG + L N+  I+R+E 
Sbjct: 4   RMSTLFLRTLREDPADAEVPSHRLLVRAGYVRRIGPGIYSWLPLGLRVLRNIEEIVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  DAIGAQEIHFPALLPKEPYEATNRWTEYGPNLFRLKDRKGGDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFDL  EG  +SY     +Y
Sbjct: 124 YSSYKDYPVILYQIQTKYRDEERPRAGILRGREFVMKDSYSFDLDDEGLTNSYRLHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           +RIF R+GL+ + + A SG +GG  S EF+  A TGE    
Sbjct: 184 IRIFDRVGLRYVIVAATSGAMGGSASEEFLAEAPTGEDTFV 224



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/188 (36%), Positives = 102/188 (54%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+ +   V+ARGIE+GHIF  G KY+   S    G DGK   + MG
Sbjct: 395 GTIEAAEVREGDPSPDGEGTLVAARGIEIGHIFQLGRKYADAFSLDALGQDGKPKRITMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R+VAA+ E SHD  G++WP  VAP  +  + I   D+  R+  E++ A L   
Sbjct: 455 SYGVGVSRMVAAIAEQSHDELGLVWPREVAPADVH-VVIAGKDESVREGAERLAADLDAA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  DD     G +FA A+L+G P  ++VG K ++   VE+K R +G RE++ ++  +
Sbjct: 514 GVRVLLDDRNASPGVKFADAELVGVPTILVVG-KGLAKGVVEVKDRRSGDREEVPVDGAV 572

Query: 436 NYASHRFS 443
            +      
Sbjct: 573 EHLVSTIR 580


>gi|167517909|ref|XP_001743295.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778394|gb|EDQ92009.1| predicted protein [Monosiga brevicollis MX1]
          Length = 421

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 137/418 (32%), Positives = 215/418 (51%), Gaps = 30/418 (7%)

Query: 24  KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           +L+++ G I Q S G+Y  LPL ++ L  +  ++R E +  GA E+S+ TL   DLW  S
Sbjct: 6   QLLVQAGYIAQSSSGMYHMLPLAKRVLGKLENLVRAEMSAIGAQEISLSTLTGKDLWTHS 65

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           GR+D+   E+ R+ DR        PTHEE +T + +S+++S RN+P   YQ+  K+RDEL
Sbjct: 66  GRWDTVSSELFRVEDRRGAVYCLAPTHEEAITTLAKSYVRSARNMPLYLYQLDRKYRDEL 125

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RPR G++R REF MKD Y+FD+  + ++ +Y  +  +Y  +F  L +  + + A++G IG
Sbjct: 126 RPRSGLLRGREFYMKDLYTFDVDEQAARLTYESVVKAYHNLFTHLHVPYVAVEADTGAIG 185

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           G +SHEF VLA  GE  V       D     E         +    E  T P A T    
Sbjct: 186 GSMSHEFQVLAPVGEDSVTVCHTC-DRAANLE---------VMPGSEAGTTPVAPTDHCQ 235

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E            S  GIEVGH F  G KYS     T+    G +     G YG+G  R
Sbjct: 236 FE------------SHAGIEVGHTFLLGHKYSSMFDVTYDSPSGPELAFM-GCYGLGTSR 282

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKV--GCDVF 380
           ++AAV E+     G+ WP S+AP+++++I + A  +     A   +  +L++   G DV 
Sbjct: 283 ILAAVTEALASENGLRWPLSLAPYRVAVITLGASRNDNIESAATCLTEQLNEAMPG-DVL 341

Query: 381 WDDM--GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DD      +  + A   L+G P  V+VGS++ +  ++E+          +++ ++I 
Sbjct: 342 LDDRCVDLSLRQKIATMRLIGVPYVVVVGSRY-NARQLEVYDSHNEAPRKIAVHDLIQ 398


>gi|328866339|gb|EGG14724.1| threonyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 706

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 80/438 (18%), Positives = 152/438 (34%), Gaps = 41/438 (9%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD         L     H +S G   +LP G +  + +   IR E +R G  E+
Sbjct: 306 MEEAAKRDHRNVGKAQELF--FFHPYSPGCTFFLPHGTRIYNKLVEFIRFEYHRRGFSEV 363

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             PT+ S  LW +SG +  Y + M  +   ++      P +      +F S  +SYR LP
Sbjct: 364 ITPTMFSQSLWEQSGHWAKYSENMFPVK-CDNSNYSMKPMNCPGHCLMFASRSRSYRELP 422

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F    +  R+E+     G+ R R+F   DA+ F  T   ++            ++   
Sbjct: 423 IRFADFGVLHRNEMAGALTGLTRVRKFQQDDAHIFC-TLAQTETEIKSCLEFMQHVYGIF 481

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G                   EF +   T       S +  D    S      +      +
Sbjct: 482 G------------------FEFSLELSTRPENRLGSDEMWDKAEKSLEVALTNFGKPWKL 523

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    D+H   + D L  + + +   ++    F    ++      T K  D +
Sbjct: 524 NPGDGAFYGPKIDIH---ITDVLKRSHQCATIQLD----FQLPIRF-ELEYMTDKAEDLQ 575

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              +   +      R++A +IE +            A             Q   +  +++
Sbjct: 576 RPVIIHRAILGSVERMMAILIEHTGGKWPFWVSPRQAIIVPV-------SQQFNEYADQL 628

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             ++   G     D   + +  +   A L  +   ++VG K   ++ V ++ R   +R+ 
Sbjct: 629 QKKIVDAGFYCDVDGSDKTLPKKVREAQLAQYNYILVVGQKEKDENTVGVRTRDNVVRDA 688

Query: 429 MSLEEVINYASHRFSNNR 446
           +SL+ ++        NN+
Sbjct: 689 ISLDALLAEFDQ---NNK 703


>gi|325293128|ref|YP_004278992.1| Threonyl-tRNA synthetase [Agrobacterium sp. H13-3]
 gi|325060981|gb|ADY64672.1| Threonyl-tRNA synthetase [Agrobacterium sp. H13-3]
          Length = 667

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 144/449 (32%), Gaps = 46/449 (10%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      ++ L      +   G+  W   G +    + A +R     T 
Sbjct: 234 YLHVLAEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHGKGWRMFQTLTAYMRRRLANT- 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEML-----------RLADRNDKAMIYGPTHEEVM 114
             E++ P +    LW  SG +  Y + M               D + +     P +    
Sbjct: 291 YQEVNAPQVLDKSLWETSGHWGWYQENMFAVKSAHAFTHPDDEDADQRVFALKPMNCPGH 350

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHS 173
             IF+  +KSYR +P    +     R E      G+MR R F   DA+ F    + +   
Sbjct: 351 VQIFKHGLKSYREMPVRLAEFGNVHRYEASGALHGLMRVRGFTQDDAHVFCTEEQMAAEC 410

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                   L ++   G   I ++  + P     S +    A++   +V   K   +    
Sbjct: 411 LRIN-DLILSVYEDFGFSEIVVKLSTRPEKRVGSDDLWDRAESVMMEVL--KTIEEQSGG 467

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
              T           +    A Y    +     L D++    +     ++      FG  
Sbjct: 468 RIKTGI---------LPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG-- 513

Query: 294 YSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
                 A +   + +      +     G+M     ++  +  G   +W   +     ++ 
Sbjct: 514 ------AFYIDQNSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPLQVVVATIT 567

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                     D   ++   L + G  V  D   E+I  +     +   P+ ++ G K   
Sbjct: 568 ------SDADDYGREVAEALREAGMAVETDFRNEKINYKVREHSVTKVPVIIVCGRKEAE 621

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V I+   +  +  MSLE+ I      
Sbjct: 622 ERTVNIRRLGSQNQTPMSLEDAITSLVEE 650


>gi|225849003|ref|YP_002729167.1| prolyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644474|gb|ACN99524.1| prolyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 563

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 112/277 (40%), Positives = 163/277 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+YF+P L+ENP +A++ SH  ++R G I   + GIY +LPLG + L  +  IIR+ 
Sbjct: 1   MLASRYFMPTLKENPSEAQVPSHIYLIRGGFIRSLAAGIYEYLPLGFRVLKKIENIIRKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P L  A+LW E+GR+D YGKE+ RL DR D     GPTHEE +TD+ R 
Sbjct: 61  MDEAGALELLLPILTPAELWKETGRWDVYGKELFRLKDRKDADFALGPTHEETITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP  FYQIQ KFRDE RPR+G++R REF+MKD YSFD++ E +  +Y  M  +
Sbjct: 121 NVRSYKDLPLNFYQIQTKFRDEARPRYGLIRGREFIMKDGYSFDVSEEDAIKTYEVMKET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF  L L  + + A+ G IGG  SHEF+V   +GE  +   ++              
Sbjct: 181 YHKIFQDLKLDYLMVEADVGAIGGKFSHEFVVKVPSGEAHIVYCENCGYAANVEAAKFHH 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             + + ++           S V     F +LP  K V
Sbjct: 241 HKLPVENLKPLEKVYTPNVSSVEEVAKFLNLPTEKIV 277



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 105/196 (53%), Gaps = 4/196 (2%)

Query: 251 QWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                     D+   K  D  P  +N      G+EVGHIF  GTKYS  M A F   DGK
Sbjct: 369 GRDVKVEEFYDLATAKEGDPCPVCKNPLKETTGLEVGHIFLLGTKYSQAMKAYFTDKDGK 428

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +  + MG YGIG  R+++A++E  HD KGIIWPD VAPF + ++ +   D+    A  +I
Sbjct: 429 EKPIIMGCYGIGVSRLISAIVEQYHDDKGIIWPDVVAPFDLHILVLNVKDEKSLKAGFEI 488

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIRE 427
           Y +  + G DV  D+     GS+F  ADL+G P ++++G K +++ KVE + R     ++
Sbjct: 489 YEKAKRQGLDVLLDERDISPGSKFKDADLIGIPNRIVIG-KSLNEGKVEYQRRDKVEEKQ 547

Query: 428 DMSLEEVINYASHRFS 443
            + L E+ N+ +    
Sbjct: 548 LVDLLEIDNFLNSLKR 563


>gi|254973700|ref|ZP_05270172.1| prolyl-tRNA synthetase [Clostridium difficile QCD-66c26]
 gi|255091090|ref|ZP_05320568.1| prolyl-tRNA synthetase [Clostridium difficile CIP 107932]
 gi|255312745|ref|ZP_05354328.1| prolyl-tRNA synthetase [Clostridium difficile QCD-76w55]
 gi|255515506|ref|ZP_05383182.1| prolyl-tRNA synthetase [Clostridium difficile QCD-97b34]
 gi|255648598|ref|ZP_05395500.1| prolyl-tRNA synthetase [Clostridium difficile QCD-37x79]
 gi|260681818|ref|YP_003213103.1| prolyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260685415|ref|YP_003216548.1| prolyl-tRNA synthetase [Clostridium difficile R20291]
 gi|306518722|ref|ZP_07405069.1| prolyl-tRNA synthetase [Clostridium difficile QCD-32g58]
 gi|260207981|emb|CBA60132.1| prolyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260211431|emb|CBE01529.1| prolyl-tRNA synthetase [Clostridium difficile R20291]
          Length = 571

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 124/310 (40%), Positives = 174/310 (56%), Gaps = 4/310 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F+P L+E P DAEI SH+LM+R+GMI + + G+Y+ LP+G +    +  IIREE
Sbjct: 1   MKMSKMFMPTLKEIPADAEITSHQLMVRSGMIKKMTSGVYNQLPMGLRVFKKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+    E+    L  ++LW ESGR+ + G+EM RL DR ++    GPTHEE  TDI R 
Sbjct: 61  LNKKDCQEILCAALLPSELWKESGRWTAMGEEMFRLKDRTEREYCLGPTHEEAFTDIIRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ+K+RDE RPRFGVMR++ F MKDAYSFD+  +G   SY  MF +
Sbjct: 121 EITSYKQLPLNLYQIQVKYRDERRPRFGVMRTKTFTMKDAYSFDVDDKGLDKSYQDMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+ IF R GL++ P++A+SG IGG  S EF+V ++ GE +V       D+    E  +  
Sbjct: 181 YVSIFDRCGLENSPVQADSGAIGGSTSAEFMVKSEVGEDEVVFCSGC-DYAANVERAESC 239

Query: 241 DIISLNSIV---EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           ++ S    +   E+   P AAT     E L  S  +  +      +   +          
Sbjct: 240 NLASQKEEMKELEEVHTPGAATIKELEEFLKTSPDKFAKTLVYEADGKTVVVVVRGDREV 299

Query: 298 MSATFKGADG 307
                  A G
Sbjct: 300 NEIKVSNAIG 309



 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 93/169 (55%), Gaps = 3/169 (1%)

Query: 255 PYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 D  N +  D           ARG+EVGHIF  GTKYS  M+A F   DGK   +
Sbjct: 375 FEGIVGDFRNVQEGDQCIVCGKPLEIARGVEVGHIFKLGTKYSESMNANFIDKDGKSKPI 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R  AA+IE  +D KGIIWP SVAP+ + ++     ++      E IY  L
Sbjct: 435 VMGCYGIGVERTAAAIIEQHNDEKGIIWPLSVAPYHVVIVPANMKNEEQISIAENIYNDL 494

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             +G +V  DD  E+IG +F  ++L+G P+++ VG K +++ KVE K R
Sbjct: 495 QAMGVEVLLDDRDERIGVKFNDSELIGIPMRITVG-KNINEGKVEFKLR 542


>gi|160935092|ref|ZP_02082478.1| hypothetical protein CLOLEP_03968 [Clostridium leptum DSM 753]
 gi|156866545|gb|EDO59917.1| hypothetical protein CLOLEP_03968 [Clostridium leptum DSM 753]
          Length = 660

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/454 (17%), Positives = 158/454 (34%), Gaps = 44/454 (9%)

Query: 2   RRSKYFLP---ILQENPRDAEIASHKLMLRTGMIHQ---HSKGIYSWLPLGQKALDNVNA 55
           + S+       + +   RD      +L    G         +G+   LP G + +  +  
Sbjct: 239 KASELTAHLEAMEEAKKRDHNKLGREL----GYFTTCDIIGQGLPILLPNGARVIQLLQR 294

Query: 56  IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEV 113
            + +E+ + G +    P +  +DL+  SG +D Y   M      +++D+     P     
Sbjct: 295 FVEDEEQKRGWLLTKTPYMAKSDLYKLSGHWDHYKDGMFVLGDEEKDDEVFALRPMTCPF 354

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
               + +  +SYR+LP  + +    FR+E      G++R R+F + + +      +  + 
Sbjct: 355 QYQAYLNKKRSYRDLPLRYNETSTLFRNEASGEMHGLIRVRQFTISEGHLMCRPDQLEEE 414

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                         +  L+      E+  +  D+S+ F       + +   + +  D   
Sbjct: 415 F-------------KSCLQLANYMLETLGLAEDVSYRFSQWDPEDKDKYIGTPEQWDEAQ 461

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +     D +    +I     A Y    D+  + +F    +   +    I+      FG 
Sbjct: 462 SAMKRILDHLGIEYAIGVGEAAFYGPKLDIQIKNVF---GKEDTLITIQIDQLLAEKFG- 517

Query: 293 KYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADGK  +   +    IG      A++   + G   +W        + +
Sbjct: 518 -------MEYVDADGKAKNPYIIHRTSIGCYERTLALLIEKYAGALPMWLMPEQVRVLPI 570

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                  +   D   ++   L   G     D   E+IG +   A +   P  +I+G K V
Sbjct: 571 ------SEKFLDKALEVDRELKAQGIRSTADSRNEKIGYKIREAQMEKIPYMLIIGEKEV 624

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ V ++ R  G+   MSLE  +  A       
Sbjct: 625 QENVVSVRSRKDGVLGSMSLETFLEKALTEIREK 658


>gi|188997600|ref|YP_001931851.1| prolyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|226701347|sp|B2V6W5|SYP_SULSY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|188932667|gb|ACD67297.1| prolyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 564

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 118/287 (41%), Positives = 164/287 (57%), Gaps = 17/287 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK+F+P L+ENP DA + SH  ++R G I   S GIY +LPLG K L  +  IIR+ 
Sbjct: 1   MLASKFFMPTLKENPSDAVVPSHIYLVRGGFIRSLSAGIYEYLPLGLKVLRKIENIIRKH 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA+E+ +P L  A+LW E+GR+  YGKE+ RL DR D     GPTHEE +TD+ R 
Sbjct: 61  MDDSGALEVLLPILTPAELWKETGRWHVYGKELFRLKDRKDAEFALGPTHEETITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP  FYQIQ KFRDE RPR+G++R REF+MKD YSFD++ E +K +Y  M  +
Sbjct: 121 NVRSYKDLPLNFYQIQTKFRDEARPRYGLIRGREFIMKDGYSFDVSEEDAKKTYEVMKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF------------- 227
           Y +IF  LGL  + + A+ G IGG  SHEF+V   +GE  +   +               
Sbjct: 181 YHKIFKELGLDYLMVEADVGAIGGKFSHEFVVKVPSGEAHIVYCEKCGYAANVEAAKFHH 240

Query: 228 ----MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                + P P E     DI S+  +      P          K+ D 
Sbjct: 241 HKLPPEEPKPIEKVYTPDIKSVEDVANFLNVPLTKLVKTLIYKIDDK 287



 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/185 (37%), Positives = 105/185 (56%), Gaps = 3/185 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +   D+   K  D  P          G+EVGHIF  GTKYS  M A F   DGK+  + 
Sbjct: 375 VSGFYDLATAKEGDPCPVCHLPLKETTGLEVGHIFLLGTKYSESMKAYFVDKDGKEKSII 434

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R+++A++E  HD KGIIWP+++APF + ++ +   DQ   +    IY +L 
Sbjct: 435 MGCYGIGVSRLISAIVEQYHDDKGIIWPENLAPFNVHILVLNPKDQESLNVGFDIYKKLK 494

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G DV  D+  E  G++F  ADL+G P ++++G K + + KVE + R   I+E + ++ 
Sbjct: 495 EKGLDVLLDERDESAGAKFKDADLIGIPHRIVIG-KALKEGKVEYQKRDGSIKELVDVKL 553

Query: 434 VINYA 438
           +IN  
Sbjct: 554 IINKL 558


>gi|83954081|ref|ZP_00962801.1| threonyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
 gi|83841118|gb|EAP80288.1| threonyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
          Length = 649

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 145/442 (32%), Gaps = 45/442 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W   G      +   +R +Q  
Sbjct: 234 KAHLNMLEEAAKRDHRKLGREMDLY--HMQEEAPGQVFWHANGWLIYTQLQDYMRRKQRA 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G +E++ P +    LW  SG ++ Y   M  +       R        P +      IF
Sbjct: 292 GGYVEVNTPQVVDRKLWEASGHWEKYQDHMFIVEVDEEHAREKSVNALKPMNCPCHVQIF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D + F    +  +    K 
Sbjct: 352 NQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIFCA-EDQIEAETAKF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 I+  LG ++  ++    P     S E                   D    +  +
Sbjct: 411 IEFLSGIYKDLGFENFSVKFSDRPEKRSGSDE-----------------VWDKAEAALLS 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                    ++     A Y    +     L D++  + +     ++    F    +    
Sbjct: 454 ATRKAGIEPTLNPGEGAFYGPKLEF---VLTDAIGRDWQCGTHQVD----FVLPER---- 502

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G+DG  H    +    +G+      ++   H GK   W         S+     
Sbjct: 503 LDATYIGSDGAKHRPVMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIT---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++ A L   G     D   E+I  +     +   P+ + VG++ V +  V
Sbjct: 559 --SEADDYVHEVVATLKAQGVRAEADIRNEKINYKVREHSVGKVPVILAVGAREVEEKTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYA 438
            ++          +L +V N  
Sbjct: 617 SVRRLGEKQTSVQALSDVANAL 638


>gi|298489744|ref|YP_003719921.1| prolyl-tRNA synthetase ['Nostoc azollae' 0708]
 gi|298231662|gb|ADI62798.1| prolyl-tRNA synthetase ['Nostoc azollae' 0708]
          Length = 597

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 115/240 (47%), Positives = 152/240 (63%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S      L+++P DAEI SH+L+LR G I +   G+Y++LPL  + L  V+ I+REE
Sbjct: 1   MRLSNKLFVTLRDDPGDAEIPSHQLLLRAGYIRRIGSGVYAYLPLMWRVLQKVSQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N TGA E  +P LQ A+LW +SGR+D+Y K    M  L DR ++ +  GPTHEEV+T +
Sbjct: 61  MNATGAEECLLPQLQPAELWKDSGRWDTYTKAEGIMFSLIDRREQQLGLGPTHEEVITTV 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  I+SYR LP   YQIQ KFRDE+RPRFG+MRSREF+MKD YSF    E  K +Y  M
Sbjct: 121 ARDMIRSYRQLPLHLYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHTDEESLKKTYQDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           + +Y  +  R GL    + A+SG IGG  S EF+VLAD GE +V  ++D   +    E  
Sbjct: 181 YQAYSNMLRRAGLAFRAVEADSGAIGGSGSTEFMVLADAGEDEVLYTEDG-KYAANVEKA 239



 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 5/200 (2%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
           +  EQ+  P     D+   ++ D     P     +ARGIEVGHIF  GTKYS  M AT+ 
Sbjct: 400 NWCEQFKLPE-LVVDIRKARVGDRSLHDPSQTLKTARGIEVGHIFQLGTKYSEAMGATYI 458

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              G+   + MG YG+G  R+  + +E S+D  GIIWP ++AP+   +      D    +
Sbjct: 459 NEQGEKKPLIMGCYGVGVSRLAQSAVEQSYDKDGIIWPVAIAPYHSIITIPNIKDAQQIE 518

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+Y  L+K G +   DD  E+ G +F  ADL+G P +++ G + +++ KVE+  R  
Sbjct: 519 VAEKLYTELNKAGVETLLDDRDERAGVKFKDADLIGIPFRIVTG-RAIANGKVEVVKRAN 577

Query: 424 GIREDMSLEEVINYASHRFS 443
              + +++EEV+N       
Sbjct: 578 RESQQIAIEEVVNTLQQWLK 597


>gi|296122745|ref|YP_003630523.1| prolyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
 gi|296015085|gb|ADG68324.1| prolyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
          Length = 590

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 125/291 (42%), Positives = 172/291 (59%), Gaps = 5/291 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+P L+ENP DAEI SH+LMLR G + Q   G Y++LPLG +++  + AIIREE
Sbjct: 1   MRWSQSFIPTLKENPSDAEIPSHQLMLRAGYVRQLMAGAYTYLPLGWRSIRKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR---NDKAMIYGPTHEEVMTDI 117
            + TGA+EM +P LQ  DL+  +GR +++G  ++    R   +   +  GPTHEEV+TD+
Sbjct: 61  MDATGALEMLMPALQPIDLFERTGRKEAFGNVLINFNIRRQNHQVHLALGPTHEEVVTDL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              HI SYR LP T YQIQ KFR+E RPRFGV+R+ EF+MKDAYSF  + E    +Y K+
Sbjct: 121 MSRHISSYRQLPMTVYQIQTKFRNEERPRFGVLRTSEFIMKDAYSFHSSVESLSETYQKI 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           + +Y RIF R GL+ +P+ AESGPIGGD SHEF+  A  GE Q+   +    +    E  
Sbjct: 181 YRAYCRIFARCGLEYLPVEAESGPIGGDASHEFMAPAANGEDQIVFCRKTR-YAANLERA 239

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +   + S    V+    P +      N    D+L          +    IF
Sbjct: 240 ETGRVRSQVKPVDT-ALPASEKLHTPNVGSIDALCRLLNCQPTQLIKTLIF 289



 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/218 (26%), Positives = 106/218 (48%), Gaps = 3/218 (1%)

Query: 232 IPSENTDFDDII-SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIF 288
             +E+    +++   +  + +       T D+ N    D  P  +       GIEVGH+F
Sbjct: 364 ANAEDYHLANVVLGRDFDLPRTAEGEYETFDLRNAAAGDPSPRGEGTLELVHGIEVGHVF 423

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             GTKYS+ ++AT+         + MG YGIG  R++A++ E+  D  G++ P S+AP+ 
Sbjct: 424 KLGTKYSVSLNATYDDEAATRQPLIMGCYGIGVNRILASMAETKFDDNGLVLPLSIAPYS 483

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + +  I  +D    +   ++   L+  G D+  DD  ++ G +F  ADL+G PL+V++G 
Sbjct: 484 VVISTIGVNDPEVDEVVNQLEKELTAAGVDLLIDDRDQRPGVKFKDADLIGIPLRVVIGG 543

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           K + + +VE+K R       + +         + +  R
Sbjct: 544 KGLKEGQVELKWRHLPEATKIPVTGAAQAILDQLATRR 581


>gi|227833360|ref|YP_002835067.1| Prolyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|262184346|ref|ZP_06043767.1| prolyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|254782894|sp|C3PH25|SYP_CORA7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|227454376|gb|ACP33129.1| Prolyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
          Length = 589

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 105/282 (37%), Positives = 154/282 (54%), Gaps = 5/282 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G + + + G+Y+WLPLG +A+  +  +IR+E 
Sbjct: 4   RLSELFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGVYTWLPLGLRAMRKIEDVIRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  EM  P L   + + ES R+  YG  + RL DR    M+ GPTHEE+ T   +  
Sbjct: 64  NAIGGQEMLFPALLPREPYEESNRWTEYGDNLFRLKDRKGADMLLGPTHEEMFTTAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF MKD+YSFD+T EG   SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFTMKDSYSFDMTDEGLDESYARHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             IF RL +     +A SG +GG  S EF+ +++ GE   F      ++    E      
Sbjct: 184 QNIFDRLEIDYAICKATSGAMGGSASEEFLAVSEVGE-DTFVRATEGEYAANVEAVVTQA 242

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
              ++        P A   +    +  +SL E  + +   ++
Sbjct: 243 PEEISF----EGLPEAQEHETPKSETIESLVEWAKGAGITVD 280



 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 6/189 (3%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +    K  D  P  +      RGIE+GHIF  G KY+          +GK     MG
Sbjct: 403 EFIEAAEVKEGDPAPNGQGTLTLERGIELGHIFQLGRKYTEAFDVQILDENGKRAVPTMG 462

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R++A + E  HD KG+ WP +VAP+++ +      D    +A +K+   L + 
Sbjct: 463 SYGIGVTRMLAVLAEQRHDEKGLNWPVAVAPYQVHVAVAN-KDAAALEAGQKLVEDLDRA 521

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD      G +F  A+LLG P   I+G +  +D  +E++ R  G   ++  + +
Sbjct: 522 GIEVLYDDRPKVSPGVKFKDAELLGMPFIAILG-RAFADGIIELRIRG-GETREVPADSI 579

Query: 435 INYASHRFS 443
           ++  +    
Sbjct: 580 VDTLTELIR 588


>gi|325067070|ref|ZP_08125743.1| prolyl-tRNA synthetase [Actinomyces oris K20]
          Length = 605

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 99/284 (34%), Positives = 150/284 (52%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASH+L++R   + + + G+Y+WLPLG + L  +  I+R+E 
Sbjct: 4   RLSTSFIRTLREDPADAEVASHRLLVRACYVRRAAPGVYTWLPLGLRTLRKIEDIVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L  A+ +  +GR+D YG  + +L DR D   +  PTHEE+ T   +  
Sbjct: 64  DAMGGQEVHFPALLPAEPYQATGRWDDYGPTLFKLRDRKDGDYLLAPTHEEMFTLAVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   +Y     +Y
Sbjct: 124 YSSYKDLPAVIYQIQTKYRDEARPRAGIIRGREFVMKDSYSFDIDDAGLAAAYQAHRDTY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL  + + A +G +GG  S EF+   + GE     S         +  T   +
Sbjct: 184 ERIFTRLGLDYVIVNAMAGAMGGSHSEEFLHPCEIGEDTFVRSSSGYAANAEAVTTVVPE 243

Query: 242 IISLNSIVEQWTA--PYAATSDVHNEKLFDSLPENKRVSARGIE 283
            +  + I        P   T D   E    + P +   +    +
Sbjct: 244 AVDASGIGPARVVDTPDTPTIDSLVELCNRAYPRSDGRAWTAAD 287



 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/189 (36%), Positives = 97/189 (51%), Gaps = 4/189 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+       ARGIE+GHIF  G KYS  +  T    +GK   V MG
Sbjct: 415 GTIEAAEVREGDPAPDGSGPLHLARGIEIGHIFELGRKYSQALGLTVLDENGKARVVTMG 474

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+AA+ E++HD KG+ WP  +AP+ + ++     DQ   D  E+I + L   
Sbjct: 475 SYGIGVSRVMAALAEANHDDKGLTWPVQIAPYHVQVLATG-KDQAVFDVAEQIASSLDAD 533

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD      G +FA A+LLG P  ++VG     +  VEI+ R TG R  +S +  
Sbjct: 534 GVEVLYDDRRKVSAGVKFADAELLGLPYTLVVGRDLAKEGTVEIRDRRTGERRSVSADAA 593

Query: 435 INYASHRFS 443
               S    
Sbjct: 594 AAELSSTVR 602


>gi|160946442|ref|ZP_02093651.1| hypothetical protein PEPMIC_00402 [Parvimonas micra ATCC 33270]
 gi|158447558|gb|EDP24553.1| hypothetical protein PEPMIC_00402 [Parvimonas micra ATCC 33270]
          Length = 567

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 111/263 (42%), Positives = 163/263 (61%), Gaps = 2/263 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  +Y++P L+E+P++AEI SHKL+LR GMI + + GIYS+LPLG + +  V  I+REE
Sbjct: 1   MKMKRYYMPTLREDPQEAEIISHKLLLRAGMIRKSAAGIYSYLPLGYRTIRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+ +  LQ  ++W ESGR+ ++G EM ++ DRN++    GPT EE  T +   
Sbjct: 61  MDRMGGYEILMSALQPKEIWEESGRWQTFGPEMFKVKDRNEREFCLGPTAEEYFTTLISG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFG+ R+REF MKDAY+FD++PE    SY +M+ +
Sbjct: 121 EIKSYKQLPLNIYQIQTKYRDEKRPRFGINRAREFSMKDAYTFDVSPEMMMESYKEMWKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI--PSENTD 238
           Y ++F+RLGL    +  ++G +GG+ SHEFI L+D GE  +    +         +E   
Sbjct: 181 YEKVFNRLGLNYKIVAGDAGAMGGNSSHEFIALSDVGEGVICYCDESGYAATDEKAEVIY 240

Query: 239 FDDIISLNSIVEQWTAPYAATSD 261
             D       +E    P   T +
Sbjct: 241 KVDESGDEKELELVYTPNCKTIE 263



 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 69/196 (35%), Positives = 100/196 (51%), Gaps = 1/196 (0%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +    A    +  E     +       ARGIEVG+IF  GTKYS  ++ATF   +G   
Sbjct: 373 DFDGEIADDLLMVQEGDVCPISGKPLKFARGIEVGNIFQLGTKYSKALNATFLDENGVSQ 432

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           Y  MGS+GIG  R + A+IE ++D KGIIWP  VAP+   +  +  +D+      EKI+ 
Sbjct: 433 YFWMGSHGIGITRSITAIIEQNNDEKGIIWPIQVAPYHAIVTVVNINDEEQMKLGEKIHD 492

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G +V  DD  E+IG +F   DL+G PL++ VG K  +++ +E   R      +MS
Sbjct: 493 ELEAQGVEVMLDDRKERIGVKFNDRDLIGIPLRITVGKK-ANENIIEFSTRREMENVEMS 551

Query: 431 LEEVINYASHRFSNNR 446
            E+ IN         +
Sbjct: 552 SEDAINIVVEEVRKIK 567


>gi|323447698|gb|EGB03610.1| hypothetical protein AURANDRAFT_55515 [Aureococcus anophagefferens]
          Length = 657

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/435 (17%), Positives = 156/435 (35%), Gaps = 38/435 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKG-IYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            + +   RD  +   KL L +  I + + G +  W P G +    +    +    R G  
Sbjct: 227 RLEEAKKRDHRVLGKKLDLFS--IQEAAGGGLCFWHPRGARIRMLMEDTWKAAHERGGYE 284

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            +  P + + DLW  SG +D Y + M    D   +     P +      +++  ++SYR+
Sbjct: 285 LLVTPHIANVDLWKTSGHFDFYAEGMFDQMDVEKEQYQLKPMNCPFHCLVYKDQLRSYRD 344

Query: 128 LPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LPF + ++   +R E      G+MR R F   DA+ F    +        +      I  
Sbjct: 345 LPFRWAELGTVYRYERSGTLQGLMRVRGFTQDDAHIFCTPEQLEDEIVA-VLELTEEILS 403

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           + G     +   + P                  +   S +       +     D     +
Sbjct: 404 KFGFDDYELMLSTRP-----------------DKAVGSDEIWTKATAALKGALDRKGWDH 446

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
            + E   A Y    D+   K+ D+L    + S    +    F    ++ L   A    + 
Sbjct: 447 GVDEGGGAFYGPKIDL---KIKDALGRQWQCSTVQCD----FNLPERFELEYRAA---SG 496

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
             +  + +     G++    A++    +  G   P  +AP ++ L+ +       RD  +
Sbjct: 497 QAERPIMVHRAIFGSLERFFAILL---ESCGGDLPLWLAPTQMRLLPVT---DDARDFSK 550

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + A+ ++ G     D   +++  Q   A+    P+  +VG K ++   + ++ R  G  
Sbjct: 551 AVAAKAAQRGIRCEIDSGKDRLNKQIRNAETQRVPIMCVVGEKEMASGDLAVRARTMGDL 610

Query: 427 EDMSLEEVINYASHR 441
             + ++ + +     
Sbjct: 611 GTIDVDALFDELKDL 625


>gi|304440717|ref|ZP_07400601.1| proline--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370904|gb|EFM24526.1| proline--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 582

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 109/254 (42%), Positives = 160/254 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K ++P L+E P DAE+ SHKL+LR  MI + + GIYS+LPLG + +  +  I+REE
Sbjct: 1   MRLTKLYMPTLREVPTDAEVESHKLLLRAAMIRRSTTGIYSYLPLGYRVVRKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  +Q A++W ESGR+D +G EM +L DRN +    GPT EE  T + + 
Sbjct: 61  MDRAGSQEILMSAIQPAEIWEESGRWDKFGPEMFKLVDRNGRDFCLGPTAEEYFTTLVKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE RPRFG+ R+REFLMKDAYSFD   EG + SY+  + +
Sbjct: 121 EVSSYKQLPLNIYQIQTKYRDEKRPRFGINRAREFLMKDAYSFDKDEEGLQKSYDMYYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F RL L    +  ++G +GG +SHEFI L++TGE  +F S++        +     
Sbjct: 181 YQNVFDRLSLDYKIVEGDNGAMGGHMSHEFIALSETGEGIIFYSENSDKAYTEEKAPVHY 240

Query: 241 DIISLNSIVEQWTA 254
           D +  +  +E+   
Sbjct: 241 DFVDTSEPLEKEEV 254



 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 69/187 (36%), Positives = 99/187 (52%), Gaps = 3/187 (1%)

Query: 258 ATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D+      D +P  +    + RGIEVG+IF  GTKYS  + ATF   +GK  Y  MG
Sbjct: 380 VVEDLLMAVEGDKIPGTDEVYKTRRGIEVGNIFQLGTKYSEALDATFLDENGKSQYFVMG 439

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R V+AV+E  HD  GI+WP ++AP++I +  +    +   +  EK++A L  +
Sbjct: 440 SYGIGVTRSVSAVVEQYHDDHGIVWPMAIAPYQIIITVMNPKKEEQLELGEKLHAALVNM 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +F   DL+G PL++ VG K   DS VE   R      +M+ +E I
Sbjct: 500 GYEVLLDDRNVGAGVKFNDRDLIGIPLRITVGKK-AQDSIVEFSRRDNRENIEMTSKEAI 558

Query: 436 NYASHRF 442
           +      
Sbjct: 559 DRVVSEM 565


>gi|239917224|ref|YP_002956782.1| prolyl-tRNA synthetase, family II [Micrococcus luteus NCTC 2665]
 gi|281414302|ref|ZP_06246044.1| prolyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
 gi|259511606|sp|C5C9S6|SYP_MICLC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|239838431|gb|ACS30228.1| prolyl-tRNA synthetase, family II [Micrococcus luteus NCTC 2665]
          Length = 608

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 102/239 (42%), Positives = 142/239 (59%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P +AE+ASH+L++R G I + + GIYSWLPLG K L  V  I+REE 
Sbjct: 4   RMSTLFLRTLRDDPAEAEVASHRLLVRAGYIRRAAPGIYSWLPLGLKVLAKVERIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  +GR+D YG  + RL DR     +  PTHEE+ T + +  
Sbjct: 64  DAIGAQEVHFPALLPREPYEATGRWDEYGDGLFRLQDRRGNDYLLAPTHEEMFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF +   G   +Y     +Y
Sbjct: 124 YSSYKDLPAYLYQIQTKYRDEARPRAGLLRGREFIMKDSYSFTVDDAGLDAAYEAHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           LRIF RLGL+ +P+RA SG +GG  S EF+   + GE     S       + +  T   
Sbjct: 184 LRIFDRLGLEVVPVRATSGAMGGSRSEEFLHPTEVGEDTFVESDGGYRANVEAVTTVAP 242



 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 3/176 (1%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 + RG+E+GHIF  G KY+  +        GK   V MGSYGIG  R VAA+ E 
Sbjct: 435 GSGPLHTRRGMEMGHIFQLGRKYAEALDLKVLDVHGKQVVVTMGSYGIGITRAVAAIAER 494

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
            HD KG+ WP +VAP  +  + +    +    A E + A L   G  V  DD      G 
Sbjct: 495 YHDDKGLAWPRAVAPADVH-VVVATKGEDGLAAAETLAASLEAEGLTVLVDDRPKVSPGV 553

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +F  A+L+G P  V++G + ++D ++E+K R TG    + ++  +        + R
Sbjct: 554 KFKDAELIGVPTTVVIG-RGLADGELELKDRATGEARPVPVDGAVAAVLAEVRDGR 608


>gi|126697615|ref|YP_001086512.1| prolyl-tRNA synthetase [Clostridium difficile 630]
 gi|255099207|ref|ZP_05328184.1| prolyl-tRNA synthetase [Clostridium difficile QCD-63q42]
 gi|255304990|ref|ZP_05349162.1| prolyl-tRNA synthetase [Clostridium difficile ATCC 43255]
 gi|123174666|sp|Q18CD2|SYP1_CLOD6 RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|115249052|emb|CAJ66863.1| Prolyl-tRNA synthetase [Clostridium difficile]
          Length = 571

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 124/310 (40%), Positives = 174/310 (56%), Gaps = 4/310 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F+P L+E P DAEI SH+LM+R+GMI + + G+Y+ LP+G +    +  IIREE
Sbjct: 1   MKMSKMFMPTLKEIPADAEITSHQLMVRSGMIKKMTSGVYNQLPMGLRVFKKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+    E+    L  ++LW ESGR+ + G+EM RL DR ++    GPTHEE  TDI R 
Sbjct: 61  LNKKDCQEILCAALLPSELWKESGRWTAMGEEMFRLKDRTEREYCLGPTHEEAFTDIIRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ+K+RDE RPRFGVMR++ F MKDAYSFD+  +G   SY  MF +
Sbjct: 121 EITSYKQLPLNLYQIQVKYRDERRPRFGVMRTKTFTMKDAYSFDVDDKGLDKSYQDMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+ IF R GL++ P++A+SG IGG  S EF+V ++ GE +V       D+    E  +  
Sbjct: 181 YVSIFDRCGLENSPVQADSGAIGGSTSAEFMVKSEVGEDEVVFCSGC-DYAANVERAESC 239

Query: 241 DIISLNSIV---EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           ++ S    +   E+   P AAT     E L  S  +  +      +   +          
Sbjct: 240 NLASQKEEMKELEEVHTPGAATIKELEEFLKTSPDKFAKTLVYEADGKTVVVVVRGDREV 299

Query: 298 MSATFKGADG 307
                  A G
Sbjct: 300 NEIKVSNAIG 309



 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 93/169 (55%), Gaps = 3/169 (1%)

Query: 255 PYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 D  N +  D           ARG+EVGHIF  GTKYS  M+A F   DGK   +
Sbjct: 375 FEGIVGDFRNVQEGDKCIVCGKPLEIARGVEVGHIFKLGTKYSESMNANFIDKDGKSKPI 434

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R  AA+IE  +D KGIIWP SVAP+ + ++     ++      E IY  L
Sbjct: 435 VMGCYGIGVERTAAAIIEQHNDEKGIIWPLSVAPYHVVIVPANMKNEEQISIAENIYNDL 494

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             +G +V  DD  E+IG +F  ++L+G P+++ VG K +++ KVE K R
Sbjct: 495 QAMGVEVLLDDRDERIGVKFNDSELIGIPMRITVG-KNINEGKVEFKLR 542


>gi|296269038|ref|YP_003651670.1| prolyl-tRNA synthetase [Thermobispora bispora DSM 43833]
 gi|296091825|gb|ADG87777.1| prolyl-tRNA synthetase [Thermobispora bispora DSM 43833]
          Length = 580

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 103/239 (43%), Positives = 143/239 (59%), Gaps = 1/239 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+YSWLPLG+  L+N+  ++REE 
Sbjct: 4   RMSTLFLRTLREDPADAELPSHKLLVRAGYIRRVAPGVYSWLPLGKIVLENIARVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R GA E+  P L   + +  +GR+  YG  + RL DR     + GPTHEE+ TD+ +  
Sbjct: 64  DRMGAQEVLFPALLPREYYEATGRWTEYGDTLFRLKDRKGADYLLGPTHEEMFTDMVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFDL  +G K SY     +Y
Sbjct: 124 LSSYKDFPVTLYQIQTKYRDEARPRAGLLRAREFVMKDSYSFDLDDDGLKRSYEAHRETY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +RIF RLGL      A SG +GG  S EF+     GE           +   +E     
Sbjct: 184 IRIFDRLGLDYRICFAVSGAMGGSASEEFLAPCPNGEDTFVAC-HGCGYAANAEAVVTP 241



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 90/184 (48%), Gaps = 6/184 (3%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    K  D+ P         RGIE+GHIF  G KYS        G DGK   + MG
Sbjct: 394 GTIEAAEIKPGDACPRCGGPLSIDRGIEIGHIFQLGRKYSDAAGLDALGPDGKPIRITMG 453

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA + E  HD  G++WP  VAP  +    +    +   +   ++   L   
Sbjct: 454 SYGIGVSRLVAVIAEQRHDELGLVWPREVAPADVH--IVGTGKENQIEVAVELAETLESR 511

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V  DD  G   G +F  A+LLG P  VIVG + +++  +E++ R +G RE++ L E 
Sbjct: 512 GLRVLVDDRPGVSPGVKFKDAELLGMPTIVIVG-RGLANGVLELRDRASGAREEIPLGEA 570

Query: 435 INYA 438
            +  
Sbjct: 571 ADRI 574


>gi|195035423|ref|XP_001989177.1| GH11579 [Drosophila grimshawi]
 gi|193905177|gb|EDW04044.1| GH11579 [Drosophila grimshawi]
          Length = 493

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/432 (17%), Positives = 150/432 (34%), Gaps = 40/432 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +  +IR E  + G  E+ 
Sbjct: 88  EEAAKRDHRKIGREQELF--FFHELSPGSCFFQPRGAHIYNTLMNLIRGEYRKRGFQEVI 145

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW+ SG +  Y   M       +K     P +      IF +  +S+R LP 
Sbjct: 146 SPNIYNAKLWMTSGHWQHYADNMFSFEAEKEK-FALKPMNCPGHCLIFDNRNRSWRELPL 204

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +               ++   G
Sbjct: 205 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAPEQIKSEM-KGCLDFLRHVYTIFG 263

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F ++  T   Q     +  D    +     D+        
Sbjct: 264 FS------------------FQLVLSTRPEQYLGELEQWDAAEKALAESLDEFGMPWKEN 305

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    +++L   A       K 
Sbjct: 306 HGDGAFYGPKIDI---TIMDALKRPFQCATIQLD----FQLPIRFNLNYIA---DDGEKK 355

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +     WP  ++P ++ ++ +        +  + + 
Sbjct: 356 RPVIIHRAILGSVERMIAILT---ENYAGKWPFWLSPRQVMVVPVGP---AYDEYAKSVR 409

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R   +  +
Sbjct: 410 DQLYAAGFMSESDCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGE 469

Query: 429 MSLEEVINYASH 440
           +S+ E+I+    
Sbjct: 470 VSVAELISKLQK 481


>gi|17232215|ref|NP_488763.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|17133860|dbj|BAB76422.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 612

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 83/443 (18%), Positives = 160/443 (36%), Gaps = 38/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKG-IYSWLPLGQKALDNVNAIIREEQNRT 64
           Y     +   RD      +L L +  I + + G +  W P G      +    R+    +
Sbjct: 206 YLKQREEALRRDHRKLGQELNLFS--IQEEAGGGLVFWHPKGASIRYIIEDYWRKCHLES 263

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + + DLW  SG +D Y + M    +  ++A    P +       ++  + S
Sbjct: 264 GYQLLYTPHVANLDLWKTSGHFDFYQENMFDSMEVENQAYQIKPMNCPFHVLTYKHQLHS 323

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  + ++   +R E      G+MR R F   DA+ F L  + +      +      
Sbjct: 324 YRELPLRWAELGTVYRYERSGALHGLMRVRGFTQDDAHIFCLPHQIADE-ILGVLNLTEH 382

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G K+  +   + P     ++E                   +    +     D   
Sbjct: 383 ILSDFGFKNYEVNLSTRPDKSVGNNE-----------------VWELATSALRQALDAKG 425

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D+   K+ D++    + S   ++    F    ++ +   AT  
Sbjct: 426 WNYIVDEGGGAFYGPKIDI---KIQDAIGRLWQCSTIQVD----FNLPERFDMEYIAT-- 476

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               +   + +     G++     ++    +     +P  +AP +I L+ +       R 
Sbjct: 477 -DGSRQRPIMIHRAIFGSLERFFGILI---ENYAGDFPLWLAPVQIRLLPV---SDDVRG 529

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E +   L K G  V  D  GE++G Q   A+L   P+  +VG K V +  + ++ R  
Sbjct: 530 YTESVAIALQKDGFRVEIDISGERLGKQIRTAELEKIPVVGVVGKKEVENQNLSVRTRAN 589

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
           G    ++L ++ N+        +
Sbjct: 590 GDLGAINLNDLTNHLRETIIAKK 612


>gi|295105820|emb|CBL03363.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 637

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 149/440 (33%), Gaps = 46/440 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD      +L +   M      G+  +LP G + +  +   +R +    G  E+
Sbjct: 232 LEEAEKRDHRKLGRELGIYV-MDPLAGAGLPLYLPKGARIIRTLQEWLRRDLYTRGYEEV 290

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-------AMIYGPTHEEVMTDIFRSHI 122
             P + +AD+W  SG Y  Y + M                     P +      +++S +
Sbjct: 291 ITPHIYNADVWKTSGHYGFYKENMYFFEINEGDDENPRMTEYAVKPMNCPGHVMLYKSEL 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  +++    +R E+     G++R+R F   DA+ F    +        + +  
Sbjct: 351 HSYRDLPLRYFEFGTVYRHEMSGVVHGLLRARGFTQDDAHVFCTRDQVVDEVVAILGLV- 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                               I      E+     T   +   + D  +    +     + 
Sbjct: 410 ------------------DHIMSTFGFEYEAEISTRPEKSIGTDDMWEHATGALKEACER 451

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D++    + S   ++      FG         T
Sbjct: 452 HGLSYDINEGDGAFYGPKIDI---KVKDAIGRTWQCSTVQVDFNMPERFG--------LT 500

Query: 302 FKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           ++  D  ++    +     G++     ++   + G   +W   V    + L         
Sbjct: 501 YRTEDNTEERPWMLHRAIFGSIERFLGILIEHYAGALPLWLAPVQAAVLPLA------DR 554

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +A  ++  +L+  G  V   D  E +  + A A     P  V++G K + +  V ++ 
Sbjct: 555 HNEAAHELALKLADAGGRVEVYDQNEPMRVKIAKAQSQKIPYMVVLGDKEIENGTVSVRE 614

Query: 421 RLTGIREDMSLEEVINYASH 440
           R  G      +E+++     
Sbjct: 615 RHEGDLGAWDVEKLVQTIKD 634


>gi|289432262|ref|YP_003462135.1| prolyl-tRNA synthetase [Dehalococcoides sp. GT]
 gi|288945982|gb|ADC73679.1| prolyl-tRNA synthetase [Dehalococcoides sp. GT]
          Length = 569

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 107/252 (42%), Positives = 159/252 (63%), Gaps = 1/252 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +E P DAE  SH+L+LR+GMI Q + G+YS++PL  +++  +  IIR+E
Sbjct: 1   MRYSRLFGKTQREIPSDAETISHQLLLRSGMIAQLTAGVYSFMPLAWRSIQKIENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G  E+++P LQ  ++W +SGR   +G+ +  L DR D  ++ GPTHEEV+TD+   
Sbjct: 61  MNKAGCQELAMPVLQPVEIWQQSGREAPFGQTLFHLKDRKDHNLVLGPTHEEVITDLASR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SYR+LP   YQIQ KFRDE RPR G++R REF+MKD YSFD +PEG   SY  M  +
Sbjct: 121 YIQSYRDLPQRLYQIQAKFRDEPRPRGGLIRVREFIMKDMYSFDASPEGLDDSYQTMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  ++ R GL+S+ + A+SG IGG  SHEF+++A++GE  +        +   +E   F 
Sbjct: 181 YESVYRRCGLESMVIDADSGAIGGKASHEFMIVAESGEDSIIYCPKCS-YAANAEKAVFK 239

Query: 241 DIISLNSIVEQW 252
                   ++  
Sbjct: 240 KKTLPKETLKDL 251



 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+       + P  +    S RG+EVGHIF  GT  S    A F  A+G  H + MG Y
Sbjct: 379 ADIALAAEGSACPFCDGTFASKRGVEVGHIFKLGTFLSERFGANFTDAEGVSHPIIMGCY 438

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G+G  R++AA IE +HD KGIIWP  +AP+++ +  +   + V R++ EKIY  L     
Sbjct: 439 GMGVGRLLAAAIEQNHDEKGIIWPMPIAPYQVYICGLFLDNPVVRESAEKIYKELEAKSI 498

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V +DD     G +F  ADLLG PL++ +  + +    VE K R     E + L+ ++  
Sbjct: 499 EVLFDDRELTAGVKFNDADLLGIPLRLTISPRNLDKGGVEFKLRRNKESELVPLDSIVER 558

Query: 438 ASHRFSN 444
                 +
Sbjct: 559 VIATIKS 565


>gi|37522455|ref|NP_925832.1| threonyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
 gi|73919794|sp|Q7NCU0|SYT_GLOVI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|35213456|dbj|BAC90827.1| threonyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
          Length = 627

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 133/442 (30%), Gaps = 41/442 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
              RD      +L L          G+  W P G      +   +R+EQ + G  ++  P
Sbjct: 217 AKKRDHRKLGRELGLFV-FSDLVGPGLPLWTPKGALLRYILEEFLRKEQVKRGYQQVVTP 275

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRN 127
            +   DL+  SG +  Y  +M  L   +++       +  P +      I++S + SYR 
Sbjct: 276 HIARVDLFKTSGHWFKYKDDMFPLMATSEEEGAEEGFVMKPMNCPFHIQIYKSELHSYRE 335

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP    +    +R E     G +        D     +TPE     + K+      +F  
Sbjct: 336 LPIRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPEQLDDEFKKVVDLIQFVFRS 395

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           L L             GD     +   D    +   S    +    +      D+     
Sbjct: 396 LQL-------------GDGFSARLSFRDPTSDKYIGSDAAWEKAQAAILKASQDLGLKYF 442

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           + E   A Y    D       D+L    ++    ++                  +   DG
Sbjct: 443 VAEGEAAFYGPKLDFI---FRDALGREWQLGTVQVDYILP--------ERFELEYVAEDG 491

Query: 308 KDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                 M          R +A +IE       +                           
Sbjct: 492 SRRRPVMIHRAPFGSLERFIAILIEHFAGDFPLWLAPEQVRILPVT-------DQFVGYA 544

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E +  RL  +      D   E++G +    +    P+ ++VG    +   V ++ R+ G 
Sbjct: 545 ESVKDRLVSLEMRAEVDASSERLGKKIRNGETAKVPVLLVVGESEANSGTVAVRTRVEGE 604

Query: 426 --REDMSLEEVINYASHRFSNN 445
             +  + +EE I Y   R +  
Sbjct: 605 KDKGTLPVEEAIAYLQERLAKR 626


>gi|83942907|ref|ZP_00955367.1| threonyl-tRNA synthetase [Sulfitobacter sp. EE-36]
 gi|83845915|gb|EAP83792.1| threonyl-tRNA synthetase [Sulfitobacter sp. EE-36]
          Length = 649

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 145/442 (32%), Gaps = 45/442 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L    + + + G   W   G      +   +R +Q  
Sbjct: 234 KAHLNMLEEAAKRDHRKLGREMDLY--HMQEEAPGQVFWHANGWLIYTQLQDYMRRKQRA 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
            G +E++ P +    LW  SG ++ Y   M  +       R        P +      IF
Sbjct: 292 GGYVEVNTPQVVDRKLWEASGHWEKYQDHMFIVEVDEEHAREKSVNALKPMNCPCHVQIF 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F   D + F    +  +    K 
Sbjct: 352 NQGLKSYRDLPLRMAEFGSCNRYEPSGALHGIMRVRGFTQDDGHIFCA-EDQIEAETAKF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 I+  LG ++  ++    P     S E                   D    +  +
Sbjct: 411 IEFLSGIYKDLGFENFSVKFSDRPEKRSGSDE-----------------VWDKAEAALLS 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                    ++     A Y    +     L D++  + +     ++    F    +    
Sbjct: 454 ATRKAGIEPTLNPGEGAFYGPKLEF---VLTDAIGRDWQCGTHQVD----FVLPER---- 502

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + AT+ G+DG  H    +    +G+      ++   H GK   W         S+     
Sbjct: 503 LDATYIGSDGAKHRPVMLHRATLGSFERFIGILIEEHAGKLPFWLAPRQVVVASIT---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++ A L   G     D   E+I  +     +   P+ + VG++ V +  V
Sbjct: 559 --SEADDYVHEVVATLKAQGVRADADIRNEKINYKVREHSVGKVPVILAVGAREVEEKTV 616

Query: 417 EIKHRLTGIREDMSLEEVINYA 438
            ++          +L +V N  
Sbjct: 617 SVRRLGEKQTSVQALSDVANAL 638


>gi|38234063|ref|NP_939830.1| prolyl-tRNA synthetase [Corynebacterium diphtheriae NCTC 13129]
 gi|81829888|sp|Q6NGM7|SYP_CORDI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|38200325|emb|CAE50010.1| prolyl-tRNA synthetase [Corynebacterium diphtheriae]
          Length = 585

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 179/386 (46%), Gaps = 24/386 (6%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+Y+WLPLG + L  V  ++REE 
Sbjct: 4   RLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRTAPGVYTWLPLGLRTLRKVETVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + + ++ R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DAIGAQELLFPALLPREPYEQTHRWTEYGDSLFRLKDRKGGDYLLGPTHEEMFASAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD++  G + SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMSDAGLEDSYQRHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RI  RLG++ +   A SG +GG  S EF+ ++D GE          + P  +       
Sbjct: 184 QRILDRLGVEYVICAATSGAMGGSASEEFLAVSDNGEDTFV---RATEGPYAANVEAVVT 240

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
              +   +EQ  AP A   +  N +  ++L +  + +   +E   +    T   L +  T
Sbjct: 241 QPGVERPLEQ--APEAVEYETPNAETIEALVQWAQSAGVTVEDRSVAAADTLKCLLVKIT 298

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                             GA     A I    D +  +     +     +      D   
Sbjct: 299 ----------------QPGAEEAELAGILLPGDREVDMKRLEASVEPAEVELASEEDFKN 342

Query: 362 RDACEKIY---ARLSKVGCDVFWDDM 384
                K Y     L+  G  V  D  
Sbjct: 343 NPFLVKGYVGPRALNAHGVKVLADPR 368



 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +    +  D  PE +     ARGIEVGHIF  G KY+           GK     MGSY
Sbjct: 401 IEAAEIREGDPAPEGQGTLTLARGIEVGHIFQLGRKYTEAFDVQILDESGKRAIPTMGSY 460

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R++A + E  HD  G+ WP  VAP+++ ++     D+   +A + + A L   G 
Sbjct: 461 GIGVSRLMAVLAEQRHDETGLNWPLEVAPYQVHVVVAN-KDKEAIEAGDALVAALDSHGI 519

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +V +DD      G +F  A+LLG P  V++G +   D  +E++ R       +S +E+++
Sbjct: 520 EVLFDDRPKVSPGVKFKDAELLGMPFVVVLG-RAFKDGNIELRERG-QETVLVSADEIVD 577

Query: 437 YASHRFS 443
               + +
Sbjct: 578 TVVAKLN 584


>gi|326333619|ref|ZP_08199856.1| proline--tRNA ligase [Nocardioidaceae bacterium Broad-1]
 gi|325948525|gb|EGD40628.1| proline--tRNA ligase [Nocardioidaceae bacterium Broad-1]
          Length = 582

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 108/281 (38%), Positives = 158/281 (56%), Gaps = 2/281 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  F+  L+E+P DAE+ASHKL++R G I + + GIYSWLPLG + L  V  IIREE  
Sbjct: 1   MSTLFVRTLREDPADAEVASHKLLVRAGYIRRAAPGIYSWLPLGLRVLGKVEQIIREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G+ E+  P L   + +  +GR+  YG  + RL DR +   + GPTHEE+ T + +   
Sbjct: 61  SIGSQEVHFPALLPREPYEATGRWTEYGDGIFRLKDRKEADYLLGPTHEEMFTLLVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+T EG + +Y     +Y+
Sbjct: 121 GSYKDLPLSIYQIQTKYRDEARPRAGLLRGREFIMKDSYSFDVTDEGLEAAYQAHRDAYV 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           R+F RLG + + ++A SG +GG  S EF+ +++ GE     S       + +  T   + 
Sbjct: 181 RVFDRLGFEYVIVKATSGAMGGSASEEFLAVSEAGEDTFVRSPGGYAANVEAVTTLAPEP 240

Query: 243 ISLN--SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
           IS            P   T     + L  + P + R    G
Sbjct: 241 ISYEGVPAAHAEDTPETPTIQTLVDHLNKAFPRDDRPWEAG 281



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 5/189 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+       ARGIE+GH+F  G KY+  +       +GK   V MG
Sbjct: 395 GTIEAAEVREGDPAPDGSGPLTLARGIEMGHVFQLGRKYADALGLQVLDENGKLVTVTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R VAA+ E + D  G+ WP +VAP+ + L+     D    +A   +   L   
Sbjct: 455 SYGIGVTRAVAAIAEGTLDEIGLAWPRNVAPYDVHLVATG-KDSAVFEAAATLAEELEAA 513

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G DV +DD      G +F  A+L+G P  V VG K + + K+E+K R +G + +++L + 
Sbjct: 514 GIDVLYDDRPKVSPGVKFKDAELIGVPTIVTVG-KGLVEGKIEVKDRKSGEKTEVALADA 572

Query: 435 INYASHRFS 443
           + + +   +
Sbjct: 573 VAHLTEVVA 581


>gi|300813650|ref|ZP_07093972.1| proline--tRNA ligase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512192|gb|EFK39370.1| proline--tRNA ligase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 570

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 105/275 (38%), Positives = 162/275 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++P L+E+P+DAEI SHK +LR G I + + GIY++L LG + +  +  I+REE
Sbjct: 1   MRLSKLYMPTLREDPQDAEIVSHKFLLRGGFIRKSASGIYTYLTLGYRVVRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  +Q  ++W +SGR++ YG EM +L DR+D+    GPT EE  T + + 
Sbjct: 61  MDRCGSQEILMSAIQPREIWEDSGRWEKYGPEMFKLKDRHDRDFCLGPTAEEYFTTLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP   YQIQ K+RDE RPRFG+ R+REF MKDAY+FD   EG + SY  M+ +
Sbjct: 121 EVNSYKDLPLNLYQIQTKYRDEKRPRFGINRAREFSMKDAYTFDEDLEGLEKSYMNMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y ++F RL L    +  ++G +GG  SHEFI LA++GE  +  S++        +     
Sbjct: 181 YEKVFDRLSLNYKIVEGDNGAMGGSGSHEFIALAESGEGVIVFSENGKYGATDEKAPVEY 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                    E         S + +   F ++ + +
Sbjct: 241 KAPQKEDKKELEKVYTPNCSSIDDVSKFLNIEKGR 275



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 99/173 (57%), Gaps = 1/173 (0%)

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
           ++   ARGIEVG+IF  GTKYS  ++AT+   +GK  Y  MGSYGIG  R VAA++E ++
Sbjct: 398 DEYKFARGIEVGNIFQLGTKYSKSLNATYLDRNGKAQYFYMGSYGIGITRTVAAIVEQNY 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  GIIWP + AP++  +  I  +++  ++  EKIY  L + G +V  DD   + G +F 
Sbjct: 458 DENGIIWPVATAPYECIVTVINPNNEEQKELGEKIYKSLQEKGIEVLIDDRDLRAGVKFK 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             DL+G P+++ VG K  SD  VE   R      ++S +  I  A     + R
Sbjct: 518 DRDLIGIPVRITVGKK-ASDDVVEYSLRKEMKNSEISSQSAIESAIKEVYDGR 569


>gi|99034562|ref|ZP_01314532.1| hypothetical protein Wendoof_01000659 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 339

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 171/358 (47%), Positives = 242/358 (67%), Gaps = 19/358 (5%)

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           GRYD YGKEMLR+ DR+++ M++GPTHEE+ TD+ R  +KSY++LP   YQIQ KFRDE+
Sbjct: 1   GRYDDYGKEMLRIKDRHEEDMLFGPTHEEIATDLIRDVVKSYKDLPLCLYQIQWKFRDEV 60

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RPR+GVMR REFLMKDAYSFD+  EG+ +SYN M+ +Y++IF R+G   I +RA++GPIG
Sbjct: 61  RPRYGVMRGREFLMKDAYSFDVDYEGALNSYNLMYKTYIKIFKRMGFTPIGVRADTGPIG 120

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           G+LSHEF +LA+TGE+ ++    F +     +             +E   + YA   D+H
Sbjct: 121 GNLSHEFHILANTGESTLYYDNKFSELLESED-------------IESLKSIYAVADDMH 167

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           + +    + + +   ++GIE+GHIFYFG KYS PM A+    DGK+  + MGSYGIG  R
Sbjct: 168 DPE-TCPISQEQLNVSKGIEIGHIFYFGDKYSKPMKASVTSQDGKNVNIHMGSYGIGVSR 226

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           +V A+IE+ HD KGIIWP+ VAPF+I LIN++       +A +KIY  L     +V +DD
Sbjct: 227 LVGAIIEAFHDDKGIIWPEEVAPFRIGLINLQTK---VTEAADKIYKALKSD--EVLYDD 281

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
               +G +F+  DL+G P Q+IVG K VS++ VE+K+R TG  ++M +EE IN+ S +
Sbjct: 282 TEGSVGVKFSRMDLIGLPWQIIVGKKAVSENIVEVKNRATGEVKEMQIEEAINHFSAK 339


>gi|157414515|ref|YP_001481771.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|172047019|sp|A8FK07|SYT_CAMJ8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157385479|gb|ABV51794.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747157|gb|ADN90427.1| Threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni M1]
 gi|315932015|gb|EFV10968.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 327]
          Length = 602

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 150/444 (33%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L T    +   G+  WL  G +    +  I+ +   
Sbjct: 194 LKEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHILYKIHR 252

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S +
Sbjct: 253 LRGYEPVRGPELLKADAWKISGHYANYKENM-YFTQIDEQEYGIKPMNCVGHIKIYQSDV 311

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++    
Sbjct: 312 RSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFV 370

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +                               T   +     +  +    +     D+
Sbjct: 371 DNLMKLFDFSYEMEI------------------STKPEKAIGDDEIWEVATKALKEALDE 412

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D+L    +     ++    F   +++       
Sbjct: 413 QGLKYGIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPSRF----KLE 461

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +D +      +    +G+      ++            +       + + I    + 
Sbjct: 462 YTDSDNEKKQPVMLHRAILGSFERFIGILTEHC------AGEFPFFIAPTAVGIVPIGEA 515

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I   L ++  D    +  E +  +   A+    P+ +++G   V+   V ++ 
Sbjct: 516 HIAYAKEIQKELLELNIDSEVYEKNESLSKKIRTAEKQKLPMILVLGDDEVAKRSVALRD 575

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    ++++SL+E I     + S 
Sbjct: 576 RRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|170036087|ref|XP_001845897.1| threonyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167878588|gb|EDS41971.1| threonyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 699

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 149/442 (33%), Gaps = 50/442 (11%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   IR E  + G  E+ 
Sbjct: 294 EEAAKRDHRKLGKEQELF--FFHELSPGSCFFQPKGAHIYNTLMNFIRAEYRKRGFQEVI 351

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW  SG +  Y + M       +      P +      IF    +S+R LP 
Sbjct: 352 SPNIYNAKLWQTSGHWQHYAENMFSFESEKET-FALKPMNCPGHCLIFDHRNRSWRELPL 410

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F +  +  +            ++   G
Sbjct: 411 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCMPDQIREE-ITGCLDFLKHVYGVFG 469

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P       E    A+                  +     D         
Sbjct: 470 FTFNLV-LSTRPEKYLGEIEVWNDAEK-----------------ALAESLDKFGEPWKEN 511

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    ++    +  +   +G+ 
Sbjct: 512 PGDGAFYGPKIDI---TIMDALKRAHQCATIQLD----FQLPIRF----NLNYIDDNGEK 560

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +    +G++  + A++    +     WP  ++P +I ++ +        +  +K+
Sbjct: 561 KRPVIVHRAILGSVERMIAILT---ENYAGKWPFWLSPRQIMVVPVGP---AYDEYADKV 614

Query: 369 YARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             RL   G     D D G+ +  +   A L  F   ++VG K  S   V ++ R   +  
Sbjct: 615 RLRLHDAGFMAEADLDAGDTMNKKIRNAQLAQFNFILVVGEKERSSETVNVRTRDNKVHG 674

Query: 428 DMSLEEVI--------NYASHR 441
           ++S+EE++         +  + 
Sbjct: 675 EVSVEELLVKLRRQADEFIKNE 696


>gi|27904622|ref|NP_777748.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29839437|sp|P59554|SYT_BUCBP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|27904019|gb|AAO26853.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 643

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/432 (16%), Positives = 146/432 (33%), Gaps = 40/432 (9%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD    S  L L    I +   G+  W   G      +  +IR +  +    E+  P + 
Sbjct: 243 RDHRKISKILDLY--HIQEDLPGMIFWHRNGWIVFQELKKLIRVKLRKYNYQEVKTPVMM 300

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           +  +W +SG  D+Y + M  +   ++      P +      IF   ++SYR+LP    + 
Sbjct: 301 NKKIWKDSGHLDNYKESMF-MVCSSNFEYGIKPMNCPGHVQIFNHVVRSYRDLPIRISEF 359

Query: 136 QLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               R+E      G+MR R F   DA+ F    +      N + + Y  I+   G K I 
Sbjct: 360 GSCHRNEPSGALHGLMRIRNFTQDDAHIFCREDQICSEVSNCIRMVYE-IYKIFGFKKIL 418

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +R  + P                      + +  D       T   +            A
Sbjct: 419 VRLSTRPKNR-----------------IGNDNIWDKAENDLATSLRESKIEFEYQHGEGA 461

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQ 313
            Y    ++    LFDSL    + +   ++                A +   + +    + 
Sbjct: 462 FYGPKIEL---SLFDSLGRVWQCATIQLDFCLPINL--------KAFYIDHNNERKVPII 510

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G++     ++    +     +P  +AP ++ L N+ ++        + +Y    
Sbjct: 511 VHRAVLGSIERFIGILI---EEYIGNFPTWLAPIQVVLANVNSNH---LQYIKLLYKEFY 564

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G     D   E I  +         P  +I G K V ++ + ++ R       + ++ 
Sbjct: 565 ALGIRSEIDSRNETISYKIREHIARKIPYIIICGDKEVKNNTITLRTRSGKNFYCIDVQF 624

Query: 434 VINYASHRFSNN 445
            I+      ++ 
Sbjct: 625 FISKLCKEINSY 636


>gi|170077251|ref|YP_001733889.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7002]
 gi|169884920|gb|ACA98633.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 604

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 136/443 (30%), Gaps = 42/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +    +E   RD      +L L      Q   G+  W P G      +   ++ EQ + G
Sbjct: 187 YQRRKEEALKRDHRKLGRELGLFM-FSDQVGPGLPLWTPKGTLIRSTLENFLKAEQTKRG 245

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFR 119
              +  P +   DL+  SG + +Y ++M  +    D         +  P +      I++
Sbjct: 246 YQGVVTPHIARVDLFKVSGHWQNYREDMFPMMADGDAERAAEQGFVMKPMNCPFHIQIYK 305

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             ++SYR LP    +    +R E     G +        D     +TP+  +  +  +  
Sbjct: 306 DQLRSYRELPIRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPDQLEAEFFNVVD 365

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  L LK+   R                  D    +   S +  +    +     
Sbjct: 366 LILTVFKSLQLKNFKARLS--------------FRDPNSDKYIGSDEVWEKAQNAIRKAV 411

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             +       E   A Y    D       D L    ++    ++                
Sbjct: 412 TKLDMDYFEAEGEAAFYGPKLDFI---FQDVLEREWQLGTVQVDYNLP--------ERFE 460

Query: 300 ATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             +    G      M          R++  +IE       +                   
Sbjct: 461 LEYVTEHGDRQRPIMIHRAPFGSLERLIGILIEEYAGDFPLWLAPEQVRILPV------- 513

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  ++  A+L  +G     D  GE++G     A+    P+  I G+K V  + + 
Sbjct: 514 SDEFYDYAKEQAAKLQAMGIRAVADASGERLGKLIRNAEKQKIPVMAIAGAKEVEANSLS 573

Query: 418 IKHRLTGIREDMSLEEVINYASH 440
           I+ R +G    + +EEVI+    
Sbjct: 574 IRTRASGELGAIPMEEVISRLIE 596


>gi|223044242|ref|ZP_03614279.1| prolyl-tRNA synthetase [Staphylococcus capitis SK14]
 gi|222442392|gb|EEE48500.1| prolyl-tRNA synthetase [Staphylococcus capitis SK14]
          Length = 567

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 110/237 (46%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ I+REE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 ELKSYKRLPLTLFQIQSKYRDEKRPRFGLLRGREFIMKDAYSFHADEESLDATYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y +IF R+G+ + P+ A+SG IGG+ +HEF+ L++ GE  +    +  D+    E  
Sbjct: 181 YSKIFKRVGINARPVVADSGAIGGNHTHEFMALSEIGEDTIVY-SNESDYAANIEKA 236



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 118/231 (51%), Gaps = 3/231 (1%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENK 275
            E +++      D        + D    +N+ VE  +            E    S    K
Sbjct: 339 KEIKIYADNYVKDLNNLVIGANEDGYHYVNANVERDFNIDEYGDFRFILEGEMLSDGSGK 398

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D 
Sbjct: 399 AQFAEGIEVGQVFKLGTKYSEAMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNNDD 458

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GIIWP SV PF + LI I       R+  +++Y +L+    D+ +DD  E+ G +F  A
Sbjct: 459 NGIIWPKSVTPFDLHLITINPKKDDQRELGDQLYDQLNGK-FDILYDDRKERAGVKFNDA 517

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G P++V+VG +   +  VE+K RL+G  E++ + ++ NY    + N +
Sbjct: 518 DLIGLPMRVVVGKR-AEEGIVEVKQRLSGESEEIHVNDLENYLKDLYDNLK 567


>gi|152989860|ref|YP_001355582.1| threonyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
 gi|151421721|dbj|BAF69225.1| threonyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
          Length = 613

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/450 (15%), Positives = 147/450 (32%), Gaps = 46/450 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      ++ L      +   G+  WLP G +    + +++     + G
Sbjct: 200 YLTMIEEAKKRDHRKLGSEMELFM-FSEEVGAGLPIWLPKGARLRSKLESLLFAAHRKRG 258

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-------AMIYGPTHEEVMTDIF 118
              +  P +  +DLW +SG Y +Y + M      +D+            P +      I+
Sbjct: 259 YEPVRGPEILKSDLWKKSGHYQNYKENMYFTEICDDETKKETCVEYGIKPMNCVGHIMIY 318

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +S  +SYR LP  F++  +  R E      G+ R REF   DA+ F    +        +
Sbjct: 319 KSKKRSYRELPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCKPEQIKDIVIEVL 378

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                   I    + ++ +   T   +        +    +   
Sbjct: 379 -------------------GFVDEIMRSFNFKYEMEISTKPKKAIGDDAIWEIATQALKE 419

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D+      I E   A Y    D+   K+ D++    +     ++    F    ++   
Sbjct: 420 ALDENGHEYGIDEGGGAFYGPKIDI---KITDAIGRKWQCGTIQVD----FNLPERF--- 469

Query: 298 MSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               F  +D      V +    +G+      ++   + G+   +        + +     
Sbjct: 470 -ELEFTDSDNSAKRPVMIHRAILGSFERFIGILIEHYAGEFPFFIAPTQIIFVPIA---- 524

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    +++  +L ++  D    D  + +  +   A+    P+  I+G K V    +
Sbjct: 525 --DSHVAYAKELQDKLLQMDVDSEIYDSKDSLNKRIRNAEKQKVPMVAIIGDKEVESKSL 582

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            I+ R    + +++  E       + S  R
Sbjct: 583 AIRDRREKTQYNITESEFFTKIKEKLSEVR 612


>gi|242373554|ref|ZP_04819128.1| prolyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
 gi|242348917|gb|EES40519.1| prolyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
          Length = 567

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 110/237 (46%), Positives = 161/237 (67%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ I+REE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKRLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDATYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG+ +HEF+ L++ GE  +    +  ++    E  
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGNHTHEFMALSEIGEDTIVY-SNESEYAANIEKA 236



 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/175 (40%), Positives = 104/175 (59%), Gaps = 2/175 (1%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
              +   A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E 
Sbjct: 395 GSGEAQFAEGIEVGQVFKLGTKYSEAMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQ 454

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++D  GIIWP SV PF++ LI I       R+   ++Y++L+    DV +DD  E+ G +
Sbjct: 455 NNDENGIIWPKSVTPFELHLITINPKKDEQRELGNQLYSQLNGR-YDVLYDDRQERAGVK 513

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           F  ADL+G PL+V+VG +   +  VE+K RL G  ED+ ++++ NY    + N +
Sbjct: 514 FNDADLIGLPLRVVVGKR-AGEGIVEVKQRLNGESEDVHIDDLENYLKSLYENLK 567


>gi|20071917|gb|AAH27073.1| Pars2 protein [Mus musculus]
          Length = 397

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 135/419 (32%), Positives = 209/419 (49%), Gaps = 37/419 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           +I   S G Y  +P   +A++ +  +I +E    G  ++++P+L  A+LW  + R+D  G
Sbjct: 1   LILPASPGCYHLMPYTVRAVEKLVRVIDQEMQAIGGQKINMPSLSPAELWRATSRWDLMG 60

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           +E+LRL DR+ K    GPTHEE +T  +      SY+ LP   YQ+  KFRDE RPRFG+
Sbjct: 61  RELLRLRDRHGKEYCLGPTHEEAVTALVASQKKLSYKQLPLLLYQVTRKFRDEPRPRFGL 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R REF MKD Y+FD + E ++ +Y  +  +Y R+F RLGL+ +  RA+ G IGG +SHE
Sbjct: 121 LRGREFYMKDMYTFDSSSEAAQETYGLVCDAYCRLFDRLGLQWMKARADVGSIGGTMSHE 180

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F +  D GE ++                                   A T  +   +   
Sbjct: 181 FQLPVDIGEDRLVVCPSC--------------------------HFSANTEILDLSQKIC 214

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              +      +GIEVGH FY  TKYS   +A F  A G+    +MG YG+G  R++AA I
Sbjct: 215 PDCQGPLTETKGIEVGHTFYLSTKYSSIFNALFTNAHGESLLAEMGCYGLGVTRILAAAI 274

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSKV-----GCDVFWD 382
           E       I WP  +AP+++ +I  K    +    +  EK+Y  + +      G +V  D
Sbjct: 275 EVLSTEDCIRWPRLLAPYQVCVIPPKKGSKETAATEIVEKLYDDIMEAVPQLRG-EVLLD 333

Query: 383 DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYAS 439
           D     IG++   A+ LG+P  +I G + + D    E+  + TG    ++ E V+   +
Sbjct: 334 DRTHLTIGNRLKDANKLGYPFVIIAGKRALEDPAHFEVWSQNTGEVVFLTKEGVMELLT 392


>gi|302206413|gb|ADL10755.1| Putative prolyl-tRNA synthetase [Corynebacterium pseudotuberculosis
           C231]
 gi|302330969|gb|ADL21163.1| Putative prolyl-tRNA synthetase [Corynebacterium pseudotuberculosis
           1002]
 gi|308276656|gb|ADO26555.1| Putative prolyl-tRNA synthetase [Corynebacterium pseudotuberculosis
           I19]
          Length = 585

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 106/282 (37%), Positives = 154/282 (54%), Gaps = 5/282 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+Y+WLPLG + L  +  I+REE 
Sbjct: 4   RLSALFLRTLREDPADAEVPSHKLLVRAGYIRRAAPGVYTWLPLGLRTLKKIENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DGIGAQELLFPALLPREPYQATNRWTEYGDSLFRLKDRKGADYLLGPTHEEMFAGAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T +G + SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDDGLESSYQRHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RI  RLG++     A SG +GG  S EF+ +++ GE   F      ++    E      
Sbjct: 184 QRILDRLGVEYAICSATSGAMGGSASEEFLAISENGE-DTFVRATQGNYAANVEAVVTQ- 241

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
              +   +E    P A   D  N +  DSL    + +   IE
Sbjct: 242 -PGVERSIEGL--PEAKEYDTPNSETIDSLVAWAQNAGITIE 280



 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 6/184 (3%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +    +  D  PE +     ARGIEVGHIF  G KY+          +GK     MGSY
Sbjct: 401 IEAAEVREGDPAPEGQGTLTLARGIEVGHIFQLGRKYTEAFDVQILDENGKRAIPTMGSY 460

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R++A + E  HD KG+ WP  VAPF + ++     D    +A + + + L   G 
Sbjct: 461 GIGVSRLMAVLAEQRHDEKGLNWPIEVAPFAVHVVVAN-KDTAAIEAGDALVSELDAAGV 519

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +V +DD      G +F  A+LLG P  V++G +   + KVE++ R      ++   E   
Sbjct: 520 EVLFDDRPKVSPGVKFKDAELLGMPYVVVLG-RSFKEGKVELRVRGE-EAVEIPAAEAAA 577

Query: 437 YASH 440
               
Sbjct: 578 RIID 581


>gi|311113703|ref|YP_003984925.1| threonine--tRNA ligase [Rothia dentocariosa ATCC 17931]
 gi|310945197|gb|ADP41491.1| threonine--tRNA ligase [Rothia dentocariosa ATCC 17931]
          Length = 678

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/443 (15%), Positives = 139/443 (31%), Gaps = 32/443 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L +        G+    P G      +   +R      
Sbjct: 253 EYKHRIAEAERRDHRRLGKELDLFS-FPKNIGPGLPVIHPKGGVIKREMEDYVRARHIAE 311

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +S P +   DL+  SG    Y   M      ++        +  +  +I+RS  +S
Sbjct: 312 GFQYVSTPHISKEDLFYTSGHLPYYADGMFPAMVLDNGNYRLKAMNCPMHNEIYRSRGRS 371

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  F++    +RDE      G+ R R     D++S+    +        +    L 
Sbjct: 372 YRELPLRFFEFGTVYRDEKSGVLQGLTRVRMITQDDSHSYVTKEQAPDE-VRHLLNFMLS 430

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G+    +   +    GD   +FI   +             +           +  
Sbjct: 431 LLEDFGMTDFYLELSTRDTEGDKKDKFIGTDEQ-----------WEQATAVLEQVAQETG 479

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y       + +  D++    ++S    +      FG          ++
Sbjct: 480 LELVPDPGGAAFYGPKI---SVQAKDAIGRTWQMSTVQYDFNQPSRFG--------LEYQ 528

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            ADG       + S   G++     V+    +     +P  ++P ++  + +    +   
Sbjct: 529 AADGSIQEPVMIHSAKFGSIERFLGVLT---EHYAGAFPAWLSPVQVICVPVA---EAFN 582

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +I  +L + G  V  D   ++   +   A     P  +I G +      V  + R 
Sbjct: 583 DYMTEIADKLREQGVRVEVDYGSDRFTKKIRTASTEKVPFILIAGGEDAEAGAVSFRFRG 642

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 + ++E +        N 
Sbjct: 643 NKQENGVPVDEAVARIVEHIRNR 665


>gi|89053589|ref|YP_509040.1| threonyl-tRNA synthetase [Jannaschia sp. CCS1]
 gi|88863138|gb|ABD54015.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Jannaschia sp.
           CCS1]
          Length = 648

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 144/433 (33%), Gaps = 44/433 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           KY   + +   RD      ++ L    + + + G   W P G      +   +R +Q   
Sbjct: 235 KYLNFLEEAEKRDHRRLGREMDLY--HMQEEAPGQVFWHPNGWTIYTTLQDYMRRKQRAD 292

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY-----GPTHEEVMTDIFR 119
           G +E++ P +    LW +SG +D Y + M  +    + A         P +     ++F 
Sbjct: 293 GYVEVNTPQVVDRALWEKSGHWDKYQEHMFIVEVDEEHAQTKAINALKPMNCPCHVEVFN 352

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             +KSYR+LP    +     R E      G+MR R F   DA+ F  T +  +    K  
Sbjct: 353 QGLKSYRDLPLRMAEFGSCSRYEPSGALHGIMRVRGFTQDDAHIFC-TEDQIEAECAKFI 411

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++  LG +S  +   + P     + E                   D    +    
Sbjct: 412 TFLSGVYKDLGFESFDIAFATRPEKRVGTDE-----------------AWDHVEGALEAA 454

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
              + +   I E   A Y    D +   L D++    +     ++       G       
Sbjct: 455 IKSVGNPYRIEEGDGAFYGPKLDFY---LTDAIGRVWQCGTFQVDPNLPERLG------- 504

Query: 299 SATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            A++ G DG  H    +    +G+      ++  + +G+   W         S++     
Sbjct: 505 -ASYVGQDGDKHRPYMLHRACLGSFERFIGILIENSEGRLPFWLAPRQVVVASIV----- 558

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +   ++ A L   G     D   E+I  +     +   P  + +G + V +  V 
Sbjct: 559 -SDADEFVHEVVAALKATGIRAEADTRNEKINYKVREHSVGKVPAILAIGKQEVENRTVT 617

Query: 418 IKHRLTGIREDMS 430
           ++         + 
Sbjct: 618 LRRLGEKQTRVVP 630


>gi|326771743|ref|ZP_08231028.1| proline--tRNA ligase [Actinomyces viscosus C505]
 gi|326637876|gb|EGE38777.1| proline--tRNA ligase [Actinomyces viscosus C505]
          Length = 610

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 99/284 (34%), Positives = 150/284 (52%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASH+L++R   + + + G+Y+WLPLG + L  +  I+R+E 
Sbjct: 4   RLSTSFIRTLREDPADAEVASHRLLVRACYVRRAAPGVYTWLPLGLRTLRKIEDIVRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L  A+ +  +GR+D YG  + +L DR D   +  PTHEE+ T   +  
Sbjct: 64  DAMGGQEVHFPALLPAEPYQATGRWDDYGPTLFKLRDRKDGDYLLAPTHEEMFTLAVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   +Y     +Y
Sbjct: 124 YSSYKDLPAVVYQIQTKYRDEARPRAGIIRGREFVMKDSYSFDIDDAGLAAAYQAHRDTY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL  + + A +G +GG  S EF+   + GE     S         +  T   +
Sbjct: 184 ERIFTRLGLDYVIVNAMAGAMGGSHSEEFLHPCEIGEDTFVRSSSGYAANAEAVTTVVPE 243

Query: 242 IISLNSIVEQWTA--PYAATSDVHNEKLFDSLPENKRVSARGIE 283
            +  + I        P   T D   E    + P +   +    +
Sbjct: 244 PVDASGIGPARVVDTPDTPTIDSLVELCNRAYPRSDGRAWTAAD 287



 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 96/189 (50%), Gaps = 4/189 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+       ARGIE+GHIF  G KYS  +  T    +GK   V MG
Sbjct: 415 GTIEAAEVREGDPAPDGSGPLHLARGIEIGHIFELGRKYSQALGLTVLDENGKARVVTMG 474

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+AA+ E++HD KG+ WP  +AP+ + ++     DQ   D  E+I + L   
Sbjct: 475 SYGIGVSRVMAALAEANHDDKGLTWPAQIAPYHVQVLATG-KDQAVFDVAEQIASSLDAD 533

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD      G +FA A+LLG P  ++VG     +  VEI+ R TG R  +  +  
Sbjct: 534 GVEVLYDDRRKVSAGVKFADAELLGLPYTLVVGRDLAKEGTVEIRDRRTGERRSVPADAA 593

Query: 435 INYASHRFS 443
               S    
Sbjct: 594 AAELSTTVR 602


>gi|282883093|ref|ZP_06291693.1| proline--tRNA ligase [Peptoniphilus lacrimalis 315-B]
 gi|281297070|gb|EFA89566.1| proline--tRNA ligase [Peptoniphilus lacrimalis 315-B]
          Length = 570

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 105/275 (38%), Positives = 162/275 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++P L+E+P+DAEI SHK +LR G I + + GIY++L LG + +  +  I+REE
Sbjct: 1   MRLSKLYMPTLREDPQDAEIVSHKFLLRGGFIRKSASGIYTYLTLGYRVVRKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G+ E+ +  +Q  ++W +SGR++ YG EM +L DR+D+    GPT EE  T + + 
Sbjct: 61  MDRCGSQEILMSAIQPREIWEDSGRWEKYGPEMFKLKDRHDRDFCLGPTAEEYFTTLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP   YQIQ K+RDE RPRFG+ R+REF MKDAY+FD   EG + SY  M+ +
Sbjct: 121 EVNSYKDLPLNLYQIQTKYRDEKRPRFGINRAREFSMKDAYTFDEDLEGLEKSYMNMYRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y ++F RL L    +  ++G +GG  SHEFI LA++GE  +  S++        +     
Sbjct: 181 YEKVFDRLSLNYKIVEGDNGAMGGSGSHEFIALAESGEGVIVFSENGKYGATDEKAPVEY 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                    E         S + +   F ++ + +
Sbjct: 241 KAPQKEDKKELEKVYTPNCSSIDDVSKFLNIEKGR 275



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 99/173 (57%), Gaps = 1/173 (0%)

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
           ++   ARGIEVG+IF  GTKYS  ++AT+   +GK  Y  MGSYGIG  R VAA++E ++
Sbjct: 398 DEYKFARGIEVGNIFQLGTKYSKSLNATYLDRNGKAQYFYMGSYGIGITRTVAAIVEQNY 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  GIIWP + AP++  +  I  +++  ++  EKIY  L + G +V  DD   + G +F 
Sbjct: 458 DENGIIWPVATAPYECIVTVINPNNEEQKELGEKIYKSLQEKGIEVLIDDRDLRAGVKFK 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             DL+G P+++ VG K  SD  VE   R      ++S +  I  A     + R
Sbjct: 518 DRDLIGIPVRITVGKK-ASDDVVEYSLRKEMKNSEISSQSAIESAIKEVYDGR 569


>gi|256396855|ref|YP_003118419.1| prolyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256363081|gb|ACU76578.1| prolyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 582

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 152/237 (64%), Gaps = 1/237 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G + + + GIYSWLPLG++ L+NV  ++REE 
Sbjct: 4   RMSSLFLRTLREDPADAEVPSHKLLVRGGYVRRVAPGIYSWLPLGKQVLENVTRVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  P L   + +  +GR+  YG  + RL DR     + GPTHEE+ TD+ +S 
Sbjct: 64  DRMGGQEVQFPALLPREYYEATGRWTEYGDNLFRLQDRRGNDYLLGPTHEEMFTDMVKSE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY++LP T YQIQ K+RDE RPR G++R REFLMKD+YSFDL  +G KHSY +   +Y
Sbjct: 124 VSSYKDLPVTLYQIQTKYRDEARPRAGILRGREFLMKDSYSFDLDDDGLKHSYAEHRDTY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENT 237
           +RIF RLG+K   + A SG +GG  S EF+  A TGE   V C        + +  T
Sbjct: 184 IRIFDRLGIKYKIVSAVSGAMGGSASEEFLATAPTGEDTYVACHNCGYAANVEAVET 240



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 93/200 (46%), Gaps = 6/200 (3%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSA 300
             +   V         T +    +  D  P    +    RGIE+GHIF  G KY+     
Sbjct: 379 KHVAYAVAGRDFDIEGTVEAAEVRAGDVCPRCAHELSIDRGIEIGHIFQLGRKYADAAKL 438

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
              G DGK   V MGSYG+G  R VA + E  HD  G++WP  VAP  + ++     D  
Sbjct: 439 DVLGKDGKPVRVTMGSYGVGVSRAVAVLAEQLHDELGLVWPREVAPADVHIVAAG-KDPA 497

Query: 361 CRDACEKIYARLSKVGCDVFWDDM--GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             +   +    L   G  V +DD       G +F  A+L+G P  V+VG + ++D  VE+
Sbjct: 498 IYETANRYAEELGARGVRVLYDDRVGSVSPGVKFKDAELIGVPTIVVVG-RNLADGVVEV 556

Query: 419 KHRLTGIREDMSLEEVINYA 438
           + R TG + ++++ +++ + 
Sbjct: 557 RDRQTGEKAEVAVPDLVEHV 576


>gi|84498663|ref|ZP_00997420.1| prolyl-tRNA synthetase [Janibacter sp. HTCC2649]
 gi|84381060|gb|EAP96946.1| prolyl-tRNA synthetase [Janibacter sp. HTCC2649]
          Length = 593

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 103/271 (38%), Positives = 156/271 (57%), Gaps = 5/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  FL  L+E+P DAE+  H+L++R G + + + GIY+WLPLG + L  V AI+REE
Sbjct: 1   MRMSSLFLRTLREDPVDAELPGHRLLVRAGYVRRAAPGIYTWLPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E++ P L   + +  + R+  YG  + RL DR     + GPTHEE+ T   + 
Sbjct: 61  MDAIGAQELTFPALLPREPYEATNRWTEYGDNIFRLKDRKGGDYLLGPTHEEMFTLAVKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD++ EG + SY     +
Sbjct: 121 MFSSYKDLPLSLYQIQNKYRDEARPRAGLLRGREFVMKDSYSFDVSDEGLEASYQAHRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF RLG + + + A SG +GG  S EF+ ++  GE     +     +    E     
Sbjct: 181 YIKIFDRLGFEYVIVSAMSGAMGGSASEEFLAVSAIGEDTFVRNDAGT-YAANVEAV--- 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +++  + V+    P A   D  +    D+L
Sbjct: 237 -VVTQAAPVDASGVPAAHVEDTPDTPTIDTL 266



 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 7/195 (3%)

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T      +  D  P+   V    RGIE+GHIF  G K++  +       +GK   V MG
Sbjct: 399 GTIQAAVVRDGDPSPDGNGVLHTARGIEMGHIFQLGRKFAEALDLKVLDENGKLVTVTMG 458

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARL 372
           SYG+G  R VAA+ E + D  G+IWP +V P  + ++    +   D       ++I A L
Sbjct: 459 SYGVGVSRAVAAIAEDNLDDLGLIWPRAVTPADVHVVATGKNRDRDGDVFAKADEITASL 518

Query: 373 SKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
              G  V +DD      G +F  ++L+G P  V+VG K + +  +EIK R +G R ++++
Sbjct: 519 EAQGISVLYDDREKVSPGVKFKDSELIGIPTIVVVG-KSLENGVIEIKDRRSGERREVAV 577

Query: 432 EEVINYASHRFSNNR 446
           + VI+         R
Sbjct: 578 DSVIDEVLAEVRGGR 592


>gi|119953497|ref|YP_945706.1| threonyl-tRNA synthetase [Borrelia turicatae 91E135]
 gi|254783510|sp|A1R0E4|SYT_BORT9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119862268|gb|AAX18036.1| threonyl-tRNA synthetase [Borrelia turicatae 91E135]
          Length = 583

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 163/448 (36%), Gaps = 39/448 (8%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L + +E  R D      +L L +    +   G+  + P G +    +    REE  +
Sbjct: 172 KAYLKLREEIKRRDHRKLGRELDLFSVH-EEIGPGLIFFHPSGARIRALIEDFWREEHFK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y + M    + +       P +      I+ +   
Sbjct: 231 NGYDILFTPHVGKSWLWETSGHLDFYKESMFEKMEMDKSNYYVKPMNCPFHIAIYNTGRH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G MR R F   DA+    T +  K    ++    L
Sbjct: 291 SYRDLPFRWAELGTVYRYEKVGALHGTMRVRGFTQDDAHIIC-TYDQVKFEVQEVLRFAL 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++++ G  ++     + P       +  +++                 +        ++
Sbjct: 350 YMWNKFGFTALKAYLSTKPEKSVGDEDDWIMS-----------------VKVLKEALINL 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A Y    D+   K+ DSL    ++S    +    F    ++ +  +A  
Sbjct: 393 GIDYDIDEGGGAFYGPKIDL---KIIDSLGREWQMSTIQFD----FNLPARFKMTYTAE- 444

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +     +    +G++     ++   + G   +W   +    I + NI        
Sbjct: 445 --DGKERQPFMIHRALLGSIERFFGILVEHYGGAFPVWLAPLQVVIIPVNNI------VE 496

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   ++ +R  K G  +  D D   ++ ++         P   IVG K V + K+ I+ R
Sbjct: 497 EYALEVLSRFKKEGIRIKLDNDCNMRMNAKIRQYQSQKVPYMFIVGEKEVVEGKISIRTR 556

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
                  + L+E + +   + SN + +L
Sbjct: 557 TNEQINGLELKEALEFVKLKVSN-KEIL 583


>gi|219684484|ref|ZP_03539428.1| threonyl-tRNA synthetase [Borrelia garinii PBr]
 gi|219672473|gb|EED29526.1| threonyl-tRNA synthetase [Borrelia garinii PBr]
          Length = 593

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 150/443 (33%), Gaps = 37/443 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L + +E   RD      +L L +    +   G+  + P G K    +    REE ++
Sbjct: 184 RSYLNLREEIKKRDHRKLGKELDLFSIH-EEIGPGLIFFHPNGAKIRALIEDFWREEHSK 242

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y   M    + +       P +      I+ +   
Sbjct: 243 NGYDILFTPHVGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYNTGKH 302

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G+MR+R F   DA+      +       ++    +
Sbjct: 303 SYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHIICTHSQVVDE-IKEVLRFAI 361

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G  S+     + P                  +   +    +  +        + 
Sbjct: 362 YMWSKFGFSSLKAYLSTKP-----------------DKSVGNDYDWEMSLKVLEEALSNF 404

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I +   A Y    D+   K+ DSL    ++S    +    F    ++++  +A  
Sbjct: 405 EVPYEIDKGGGAFYGPKIDL---KIVDSLEREWQMSTIQFD----FNLPERFNMTYTAE- 456

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +     +    +G++     ++   + G   +W             I   +    
Sbjct: 457 --DGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLW------LSPVQAVIIPVNNTVE 508

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+  +    G  +  D+   ++ ++         P   I+G +   + K+ I+ R 
Sbjct: 509 DYTIKVLNKFKNAGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREAIEEKISIRTRT 568

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 + L+E +     +  + 
Sbjct: 569 NEQINGIELDEALKLILLKVRDK 591


>gi|290980243|ref|XP_002672842.1| predicted protein [Naegleria gruberi]
 gi|284086421|gb|EFC40098.1| predicted protein [Naegleria gruberi]
          Length = 720

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 156/449 (34%), Gaps = 47/449 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD  + + K  L     H++S G   +LP G +  + +   IR+E  + G  E+
Sbjct: 307 IEEALKRDHRLIAKKQDLF--FFHEYSPGTPFFLPHGTRLFNKLVEFIRKEYRKRGYDEV 364

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRL---ADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             P +   +LW  SG +  Y  +M  +       ++ +   P +      +F S I+SYR
Sbjct: 365 ITPQMFQKELWETSGHWQHYKDDMFTVIEGTQHKEETIGIKPMNCPAHCLMFDSKIRSYR 424

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP          R+E R    G+ R R F   D++ F    +               ++
Sbjct: 425 ELPVRLADFSPLHRNEPRGSLTGLTRVRRFHQDDSHIFCTHDQVKSE-IENCLQFVKFVY 483

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             +   ++     + P       E                   D    S     D     
Sbjct: 484 SEIFGFNLRFNLSTRPEKFVGDIE-----------------MWDKAEQSLKECLD--GYN 524

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             + E   A Y    D+  E   DSL    + +   ++    F    +++L   +     
Sbjct: 525 WKLNEGDGAFYGPKIDIQIE---DSLQRFHQCATIQLD----FQLPRRFNLKYQSQ---N 574

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           D     V +    +G++    A++    +     WP  + P +  +  + A +    D C
Sbjct: 575 DQLITPVIIHRAILGSIERFIALLT---EHLSGRWPFWLNPRQCFICPVSAENASLVDYC 631

Query: 366 EKIYARLSK--------VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +++  ++ K            +  D   + +  +   A +L +   +++G K + +  V 
Sbjct: 632 KEVKDQIFKTAEERGVFSNYFIDVDLSDKTMKKKIRDAQVLQYNFILVLGEKEMQEKTVS 691

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ R   +   M ++ +++         +
Sbjct: 692 VRKRDGTLVGTMKIDALLSMWEELLRTYQ 720


>gi|312143811|ref|YP_003995257.1| threonyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
 gi|311904462|gb|ADQ14903.1| threonyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
          Length = 652

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 152/445 (34%), Gaps = 35/445 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           KY     +   RD      +L L    + +  +G+    P G K +  +   + +E+ + 
Sbjct: 231 KYLERREEAKKRDHNKLGRELDLFMT-VDEIGQGLPLLKPKGAKVVQILQRFVEDEEEKR 289

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G      P +  +DL+  SG ++ Y   M      +++D  M   P        I+ S +
Sbjct: 290 GYQITKTPFMAKSDLYEISGHWEHYKDGMFILGDEEKDDNLMALRPMTCPFQFQIYNSKL 349

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  + +    FR+E      G++R R+F + + +    TPE  +  +  +    
Sbjct: 350 RSYRDLPIRYSETSSLFRNEASGEMHGLIRLRQFTISEGHLIV-TPEQLEEEFRGVIDLI 408

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +   +G            I  D+ + F       + +   + +          T  D+
Sbjct: 409 NYMMESIG------------IEDDIWYRFSKWDPENKDKYIDNPEAWKDSQAKMKTILDN 456

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       +   A Y    D+  + +     +   +    I+    F    ++ +    T
Sbjct: 457 LDMEYEEADGEAAFYGPKLDIQFKNVH---GKEDTIITVQID----FALPERFDM----T 505

Query: 302 FKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   + +  +   +    IG      A++   + G    W   V    I +         
Sbjct: 506 YIDENNEKQHPIVIHRTSIGCYERTLAMLIEKYAGAFPTWLAPVQAKIIPV------SDD 559

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   +I   L      V  D   E++G +   A +   P  +IVGS+   +  V ++ 
Sbjct: 560 QLDYAYQIKKELEADDIRVEVDARTEKVGYKIREAQVEQVPYMLIVGSREEENGSVSVRE 619

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G      L E          N 
Sbjct: 620 RREGDLGTSPLAEFKERILAEIENK 644


>gi|257791654|ref|YP_003182260.1| threonyl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|257475551|gb|ACV55871.1| threonyl-tRNA synthetase [Eggerthella lenta DSM 2243]
          Length = 637

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 147/443 (33%), Gaps = 47/443 (10%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +L + T M      G+  +LP G + +  +   +R +    G 
Sbjct: 229 LRNLEEAEKRDHRKLGRELGIYT-MDPLAGVGLPMYLPKGARVIRTMQEWLRRDLYERGY 287

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFR 119
            E+  P + +AD+W  SG Y  Y + M           D         P +      +++
Sbjct: 288 EEVITPHVYNADVWKTSGHYGFYKENMYFFNINEGTDEDPRLTEYAVKPMNCPGHVMLYK 347

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S + SYR+LP  +++    +R E+     G++R+R F   DA+ F    +          
Sbjct: 348 SELHSYRDLPLRYFEFGTVYRHEMSGVVHGLLRARGFTQDDAHVFCTRDQVVDEVVAI-L 406

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                I    G +                        T   +   + D  +    +    
Sbjct: 407 DLVDHIMSTFGFQYE------------------AEISTRPEKSIGTDDMWEHATNALKEA 448

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                    I E   A Y    D+   K+ D++    + S   ++               
Sbjct: 449 CARHELAYDINEGDGAFYGPKIDI---KVKDAIGRTWQCSTVQVDFNMP--------ERF 497

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T++  D  ++    +     G++     ++   + G   +W   V    + L      
Sbjct: 498 ELTYRTEDNTEERPWMLHRAIFGSIERFLGILIEHYAGALPLWLAPVQVAVLPLA----- 552

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +A  ++  +L   G  +   D  E +  + A A     P  V++G K + +  V 
Sbjct: 553 -DRHNEAAAELAKQLKAAGGRIEVYDQNEPMRVKIAKAQSQKIPYMVVLGDKEIENGTVS 611

Query: 418 IKHRLTGIREDMSLEEVINYASH 440
           ++ R  G      +E+++     
Sbjct: 612 VRERHEGDLGAWPVEQLVEKLRE 634


>gi|262038762|ref|ZP_06012119.1| threonine--tRNA ligase [Leptotrichia goodfellowii F0264]
 gi|261747220|gb|EEY34702.1| threonine--tRNA ligase [Leptotrichia goodfellowii F0264]
          Length = 636

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 169/439 (38%), Gaps = 43/439 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E  R D      ++ L    + +H  G   ++P G + ++ +  I R+E  +  
Sbjct: 230 YLTMLEEAERRDHRKLGKQMDLF--FLDEHGPGFPFFMPKGMELMNKLQEIWRKEHKKRK 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +   +LW  SG + +Y + M   ++ ++K     P +       +++++ SY
Sbjct: 288 YEEIRTPVMLDKELWEISGHWFNYRENMYT-SEIDEKVYAIKPMNCPGSIIAYKNNLHSY 346

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP  + ++ L  R E      G+MR R F   DA+ F  T E  +    ++   Y + 
Sbjct: 347 KDLPLKYGEMGLVHRHEFSGALHGLMRVRAFTQDDAHVFC-TKEQIEEQIIEIIDLYDKF 405

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G         + P     S E   +A+                     +  +    
Sbjct: 406 YTLFGFDYNI-ELSTKPEKAIGSDEIWAVAEA-----------------DLASALEKKGI 447

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    D    K+ DS+    +     ++    F    ++      ++ G
Sbjct: 448 KYKLNPGDGAFYGPKIDF---KMRDSIGRIWQCGTIQLD----FNLPARF----EMSYIG 496

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+ H    +     G+M     ++   + G    W             I    +    
Sbjct: 497 ADGEKHEPVMIHRAMYGSMERFIGILIEHYAGAFPTW------LAPVQARILTISKEQVP 550

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD-LLGFPLQVIVGSKFVSDSKVEIKHRL 422
             EK+Y  L + G  V  D   E+IG +   A+     P+Q+I+G   V +++V ++   
Sbjct: 551 FAEKLYEELQEAGIRVDIDTRDEKIGYKIREANGDQKIPVQLIIGKNEVENNEVNVRRFG 610

Query: 423 TGIREDMSLEEVINYASHR 441
           +   +++S++E+++     
Sbjct: 611 SQDSQNVSVKEIVDMLLEE 629


>gi|29376876|ref|NP_816030.1| prolyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227519897|ref|ZP_03949946.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|81838863|sp|Q831W7|SYP_ENTFA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118138617|pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
           Complexed With A Prolyl-Adenylate Analogue
           ('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
 gi|118138618|pdb|2J3L|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
           Complexed With A Prolyl-Adenylate Analogue
           ('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
 gi|118138619|pdb|2J3M|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
           Complexed With Atp, Manganese And Prolinol
 gi|118138620|pdb|2J3M|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
           Complexed With Atp, Manganese And Prolinol
 gi|29344341|gb|AAO82100.1| prolyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227072691|gb|EEI10654.1| prolyl-tRNA synthetase [Enterococcus faecalis TX0104]
          Length = 572

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 105/235 (44%), Positives = 145/235 (61%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T++ R 
Sbjct: 61  FEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RDE R R G++R REF+MKD YSF         SY     +
Sbjct: 121 EINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF R GL+   +  + G +GG  S EF+ +++ GE  + C     D+    E
Sbjct: 181 YSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTI-CYSTESDYAANLE 234



 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 107/187 (57%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +  D  P+   V    +GIE+GHIF  GT+YS  M AT    +G++  V MG Y
Sbjct: 382 EDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E + D +GI WP  +APF + ++ +   D+      +++ A +++ G 
Sbjct: 442 GIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+ + 
Sbjct: 502 EVLVDDRNERAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELEST 560

Query: 438 ASHRFSN 444
            S   + 
Sbjct: 561 LSILMNT 567


>gi|70726652|ref|YP_253566.1| prolyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|114152257|sp|Q4L5W5|SYP_STAHJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|68447376|dbj|BAE04960.1| proline-tRNA ligase [Staphylococcus haemolyticus JCSC1435]
          Length = 566

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 120/294 (40%), Positives = 180/294 (61%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P  ++ P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ IIREE
Sbjct: 1   MKQSKVFIPTRRDVPAEAEALSHQLLLKAGLIKQSTSGIYSYLPLASRVLNNISKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T I R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDETYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y RIF R+G+ + P+ A+SG IGG+ +HEF+ L++ GE  +  S+   D+    E     
Sbjct: 181 YDRIFKRVGINARPVVADSGAIGGNHTHEFMALSEIGEDTIVYSEH-SDYAANIEKAEVV 239

Query: 238 -DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              ++  +  + +E+   P   T+    + L   + E  +     I+   I + 
Sbjct: 240 YHPNEKHTEVAELEKVETPNVKTAQELADFLNRPVDEIVKSMIFKIDGEFIMFL 293



 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/180 (39%), Positives = 105/180 (58%), Gaps = 4/180 (2%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E L D   E K   A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R 
Sbjct: 390 ETLSDGSGEAK--FAEGIEVGQVFKLGTKYSEAMNATFLDNQGKAKPLIMGCYGIGVSRT 447

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++A++E ++D  GIIWP SV PF + LI I        +  +++Y  L +   DV +DD 
Sbjct: 448 LSAIVEQNNDENGIIWPKSVTPFDLHLITINPKKDEQLELGDQLYKELQQQ-YDVLYDDR 506

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ G +F  ADL+G P++++VG K  S+  VE+K R TG  E++ + ++  + +  +SN
Sbjct: 507 KDRAGVKFNDADLIGLPIRIVVG-KNASEGIVEVKVRQTGESEEVHINDLNTHIATLYSN 565


>gi|270009374|gb|EFA05822.1| hypothetical protein TcasGA2_TC008604 [Tribolium castaneum]
          Length = 685

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 148/432 (34%), Gaps = 42/432 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD         L     H+ S G   + P G    + +   I++E  + G  E+ 
Sbjct: 280 EEAAKRDHRKIGRDQELF--FFHELSPGSCFFQPRGAHIYNTLINFIKKEYRKRGFQEVI 337

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW  SG +  Y   M    D         P +      IF +  +S+R LP 
Sbjct: 338 SPNIFNAKLWQVSGHWAHYADNMFSF-DVEKDKFALKPMNCPGHCLIFDNRTRSWRELPL 396

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F       +            ++   G
Sbjct: 397 RLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCALEHIKQE-IKGALDFLSHVYSVFG 455

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F V+  T   +        +    + +   DD  +  S+ 
Sbjct: 456 FT------------------FNVVLSTRPEKYLGDLAMWEQAEKALSEGLDDFGAPWSVN 497

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    +     ++    F    ++    + ++    G+ 
Sbjct: 498 PGDGAFYGPKIDI---TVHDALKRAHQCGTIQLD----FQLPIRF----NLSYVSESGEK 546

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +    +G++  + A++    +  G  WP  ++P +  +I +        +  + +
Sbjct: 547 KRPVIIHRAILGSVERMIAILT---ESCGGKWPFWISPRQAMVIPVGP---TYDEYAQDV 600

Query: 369 YARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             +L + G     D D G+ +  +   A L  F   ++VG K  S   V ++ R   +  
Sbjct: 601 KKKLYEAGFMAEVDTDAGDTMNKKIRNAQLAQFNFILVVGEKERSSQTVNVRTRDNIVHG 660

Query: 428 DMSLEEVINYAS 439
           ++S+E +I    
Sbjct: 661 EISVEGLIEKFK 672


>gi|323446287|gb|EGB02506.1| hypothetical protein AURANDRAFT_59726 [Aureococcus anophagefferens]
          Length = 452

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/435 (17%), Positives = 156/435 (35%), Gaps = 38/435 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKG-IYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            + +   RD  +   KL L +  I + + G +  W P G +    +    +    R G  
Sbjct: 22  RLEEAKKRDHRVLGKKLDLFS--IQEAAGGGLCFWHPRGARIRMLMEDTWKAAHERGGYE 79

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            +  P + + DLW  SG +D Y + M    D   +     P +      +++  ++SYR+
Sbjct: 80  LLVTPHIANVDLWKTSGHFDFYAEGMFDQMDVEKEQYQLKPMNCPFHCLVYKDQLRSYRD 139

Query: 128 LPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LPF + ++   +R E      G+MR R F   DA+ F    +        +      I  
Sbjct: 140 LPFRWAELGTVYRYERSGTLQGLMRVRGFTQDDAHIFCTPEQLEDEIVA-VLELTEEILS 198

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           + G     +   + P                  +   S +       +     D     +
Sbjct: 199 KFGFDDYELMLSTRP-----------------DKAVGSDEIWTKATAALKGALDRKGWDH 241

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
            + E   A Y    D+   K+ D+L    + S    +    F    ++ L   A    + 
Sbjct: 242 GVDEGGGAFYGPKIDL---KIKDALGRQWQCSTVQCD----FNLPERFELEYRAA---SG 291

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
             +  + +     G++    A++    +  G   P  +AP ++ L+ +       RD  +
Sbjct: 292 QAERPIMVHRAIFGSLERFFAILL---ESCGGDLPLWLAPTQMRLLPVT---DDARDFSK 345

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + A+ ++ G     D   +++  Q   A+    P+  +VG K ++   + ++ R  G  
Sbjct: 346 AVAAKAAQRGIRCEIDSGKDRLNKQIRNAETQRVPIMCVVGEKEMASGDLAVRARTMGDL 405

Query: 427 EDMSLEEVINYASHR 441
             + ++ + +     
Sbjct: 406 GTIDVDALFDELKDL 420


>gi|227503402|ref|ZP_03933451.1| prolyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
 gi|227075905|gb|EEI13868.1| prolyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
          Length = 594

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 106/282 (37%), Positives = 159/282 (56%), Gaps = 7/282 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G + + + GIY+WLPLG +AL  +  ++R+E 
Sbjct: 9   RLSELFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGIYTWLPLGLRALRKIEDVVRQEM 68

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM  P L   + + ++ R+  YG  + RL DR +  ++ GPTHEE+  +  +  
Sbjct: 69  DAIGGQEMLFPALLPREPYEKTNRWVEYGPNLFRLQDRKNADLLLGPTHEEMFANAVKDM 128

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF+MKD+YSFD+  EG   SY +   +Y
Sbjct: 129 YSSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFVMKDSYSFDMNDEGLDSSYARHRKAY 188

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
             +F RL +     +A SG +GG  S EF+ L++ GE  +F      D+    E      
Sbjct: 189 QNVFDRLEIDYAICKATSGAMGGSASEEFLALSEVGE-DLFVRSTEGDYAANVEAVVTQA 247

Query: 240 --DDIISLNSIVEQWTAPYAATSD--VHNEKLFDSLPENKRV 277
             +  I+     +++  P AAT +  VH  K  D   +   V
Sbjct: 248 PPEKDIAGQPAAKEYRTPDAATIEALVHWAKTEDIAVDGHEV 289



 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 6/199 (3%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
            V           +    K  D  P+        RGIE+GHIF  G KY+          
Sbjct: 398 CVAGRDFHVDEFVEAAEVKEGDPAPDNQGTLALQRGIELGHIFQLGRKYTEAFDVQILDE 457

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           +GK     MGSYGIG  R++A + E  HD KG+ WP +VAP+++ +      D    +A 
Sbjct: 458 NGKRAIPTMGSYGIGISRMLAVLAEQRHDDKGLNWPVAVAPYQVHVAVAN-KDAAAMEAG 516

Query: 366 EKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +K+   LS+ G +V +DD      G +F  A+LLG P   IVG +   D  +E++ R   
Sbjct: 517 DKLVEELSQAGLEVLFDDRPKVSPGVKFKDAELLGMPFVAIVG-RAFKDGIIELRIRG-Q 574

Query: 425 IREDMSLEEVINYASHRFS 443
              ++  +E+++       
Sbjct: 575 ETLEVPADEIVDKLLELVR 593


>gi|52080260|ref|YP_079051.1| prolyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52785637|ref|YP_091466.1| prolyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|319645960|ref|ZP_08000190.1| prolyl-tRNA synthetase [Bacillus sp. BT1B_CT2]
 gi|81825303|sp|Q65JJ1|SYP_BACLD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|52003471|gb|AAU23413.1| prolyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52348139|gb|AAU40773.1| ProS [Bacillus licheniformis ATCC 14580]
 gi|317391710|gb|EFV72507.1| prolyl-tRNA synthetase [Bacillus sp. BT1B_CT2]
          Length = 572

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 111/266 (41%), Positives = 161/266 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+  +P L+E P DAE  SH+L+LR G I Q++ G+YS++PL  K +  + +I+REE
Sbjct: 1   MRQSRTLIPTLREVPADAEAKSHQLLLRAGFIRQNTSGVYSYMPLANKVIHKIQSIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P LQ A+ W ESGR+ +YG E++RL DR+ +    G THEEV+T I R 
Sbjct: 61  MEKINAVEMLMPALQQAETWQESGRWYTYGPELMRLKDRHGREFALGATHEEVITSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +YN M+ +
Sbjct: 121 EVKSYKRLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHSSAESLDETYNDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R GL   P+ A+SG +GG  +HEF+ L+D GE  +  S               +
Sbjct: 181 YTNVFTRCGLNFRPVIADSGAMGGKDTHEFMALSDVGEDTIAYSDQSSYAANIEMAEVKE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEK 266
                 + +++    +  +     E 
Sbjct: 241 TDAGEQAEMKELQEVHTPSVKTIEEV 266



 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 104/187 (55%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   +  D  P+ K      +GIEVG +F  GT+YS  M AT+   +G+   + MG Y
Sbjct: 382 ADLRFIQEGDPSPDGKGTIRFAKGIEVGQVFKLGTRYSEAMDATYLDENGRAQPMLMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R ++A++E  HD KG+IWP  V P+ + ++ +   +       EK+Y      G 
Sbjct: 442 GIGISRTLSAIVEQHHDDKGLIWPLEVTPYDLHILALNMKNDAQVQLAEKLYEEFKANGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV +DD  E+ G +FA +DL+G P+++ VG +   +  VE+K R TG   +++ +E+ ++
Sbjct: 502 DVLFDDRAERAGVKFADSDLIGLPIRITVGKR-ADEGVVEVKIRKTGESFEIAADELFDF 560

Query: 438 ASHRFSN 444
              +  +
Sbjct: 561 IEKQVKS 567


>gi|108799043|ref|YP_639240.1| prolyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119868158|ref|YP_938110.1| prolyl-tRNA synthetase [Mycobacterium sp. KMS]
 gi|126434646|ref|YP_001070337.1| prolyl-tRNA synthetase [Mycobacterium sp. JLS]
 gi|122977105|sp|Q1BAA0|SYP_MYCSS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152112933|sp|A1UER2|SYP_MYCSK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|108769462|gb|ABG08184.1| prolyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119694247|gb|ABL91320.1| prolyl-tRNA synthetase [Mycobacterium sp. KMS]
 gi|126234446|gb|ABN97846.1| prolyl-tRNA synthetase [Mycobacterium sp. JLS]
          Length = 584

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 93/250 (37%), Positives = 141/250 (56%), Gaps = 1/250 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G +     G+Y+WLPLG +    +  I+R+E 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYVRPVGPGLYTWLPLGLRVFRKIEQIVRDEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P L     +  + R+  YG  + RL DR D   + GPTHEE+ T   +  
Sbjct: 64  TAIGGQEILFPALLPRAPYETTNRWTEYGDTLFRLKDRRDNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   +QIQ K+RDE RPR G++R REF+MKD+YSFD+  +G K +Y+    +Y
Sbjct: 124 YSSYKDFPLILFQIQTKYRDEARPRAGILRGREFVMKDSYSFDVDDDGLKTAYHLHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFD 240
            RIF RLG+  + + A SG +GG  S EF+  ++ GE   V C +      + +  T   
Sbjct: 184 QRIFARLGVHYVIVSAVSGAMGGSASEEFLAESEVGEDTFVRCLQSGYAANVEAVLTRVP 243

Query: 241 DIISLNSIVE 250
           + + +    E
Sbjct: 244 EPLPIEGQPE 253



 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 66/188 (35%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     VSARGIE+GHIF  G KY+   SA   G DGK   + MG
Sbjct: 399 GTIEAAEVRDGDPSPDGAGPLVSARGIEIGHIFQLGRKYTEAFSADVLGEDGKPVRLTMG 458

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA + E  HD  G+ WP +VAPF +  + I   D   R    ++   L ++
Sbjct: 459 SYGIGVSRLVAVIAEQQHDELGLRWPAAVAPFDVH-VVIANKDDGARTGATELAGELDRL 517

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +F  A+LLG P  V+VG +   D  VE++ R +G + ++ +++  
Sbjct: 518 GLEVLLDDRKSSPGVKFKDAELLGVPWIVVVG-RGWGDGVVELRDRFSGEKREIGVDDAA 576

Query: 436 NYASHRFS 443
                   
Sbjct: 577 TEILATVR 584


>gi|73748213|ref|YP_307452.1| prolyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|114152188|sp|Q3ZZD0|SYP_DEHSC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|73659929|emb|CAI82536.1| prolyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
          Length = 569

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 107/252 (42%), Positives = 160/252 (63%), Gaps = 1/252 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +E P DAE  SH+L+LR+GMI Q + G+YS++PL  +++  +  IIR+E
Sbjct: 1   MRYSRLFGKTQREIPSDAETISHQLLLRSGMIAQLTAGVYSFMPLAWRSIQKIENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G  E+++P LQ  ++W +SGR   +G+ +  L DR D+ ++ GPTHEEV+TD+   
Sbjct: 61  MNKAGCQELAMPVLQPVEIWQQSGREAPFGQTLFHLKDRKDRNLVLGPTHEEVITDLASR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SYR+LP   YQIQ KFRDE RPR G++R REF+MKD YSFD +PEG   SY  M  +
Sbjct: 121 YIQSYRDLPQRLYQIQAKFRDEPRPRGGLIRVREFIMKDMYSFDASPEGLDDSYQTMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  ++ R GL+S+ + A+SG IGG  SHEF+++A++GE  +        +   +E   F 
Sbjct: 181 YESVYRRCGLESMVIDADSGAIGGKASHEFMIVAESGEDSIIYCPKCS-YAANAEKAVFK 239

Query: 241 DIISLNSIVEQW 252
                   ++  
Sbjct: 240 KKTLPKETLKDL 251



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 99/187 (52%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+       + P  +    S RG+EVGHIF  GT  S    A F  A+G  H + MG Y
Sbjct: 379 ADIALAAEGSACPFCDGTFASKRGVEVGHIFKLGTFLSERFGANFTDAEGVSHPIIMGCY 438

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G+G  R++AA IE +HD KGIIWP  +AP+++ +  +   + V R++ EKIYA L   G 
Sbjct: 439 GMGVGRLLAAAIEQNHDEKGIIWPMPIAPYQVYICGLFLDNPVVRESAEKIYAELEAKGI 498

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V +DD     G +F  ADLLG PL++ +  + +    VE K R     E + L+ ++  
Sbjct: 499 EVLFDDRELTAGVKFNDADLLGIPLRLTISPRNLDKGGVEFKLRRNKESELVPLDSIVER 558

Query: 438 ASHRFSN 444
                 +
Sbjct: 559 VIATIKS 565


>gi|260802092|ref|XP_002595927.1| hypothetical protein BRAFLDRAFT_268618 [Branchiostoma floridae]
 gi|229281179|gb|EEN51939.1| hypothetical protein BRAFLDRAFT_268618 [Branchiostoma floridae]
          Length = 681

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 145/449 (32%), Gaps = 51/449 (11%)

Query: 9   PILQENP--------RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
            +L+E          RD      +  L     H+ S G   +LP G    + +   I+EE
Sbjct: 261 KMLKEWKEFQEQAKERDHRKIGREQELF--FFHELSPGSCFFLPKGAHIYNKLIDYIKEE 318

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+  P + +  LW  SG +D Y + M       +      P +      ++  
Sbjct: 319 YHKRGFQEVVSPNMYNVKLWKTSGHWDHYEENMFSFEVEKET-FALKPMNCPGHCLMYDV 377

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 378 RPRSWRELPLRMADFGVLHRNELSGTLTGLTRVRRFQQDDAHIFCTMEQLEDE-IEGCLE 436

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G   + +   + P                  +    K+  D       +  
Sbjct: 437 FMNSIYTTFGF-DLKLFLSTRP-----------------EKAIGDKETWDRAEKHLASAL 478

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D       +     A Y    D+   ++FD+L    + +   ++  +            +
Sbjct: 479 DKFGMPWKLNPGDGAFYGPKIDI---QVFDALRRAHQCATIQLDFNNP--------ERFN 527

Query: 300 ATFKGADGK--DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG      V +    +G++    A++  +                     I   
Sbjct: 528 LTYVSGDGDEKKRPVMIHRAILGSVERFIAILCENFG------GKWPFWLSPRQAMIVPV 581

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                +  +K+   + + G     D D G+ +  +   A L  +   ++VG K V    V
Sbjct: 582 SPDQNEYAQKVRNSIHEAGFMCEADCDPGDTMNKKIRNAQLAQYNFIMVVGKKEVESGTV 641

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R   +  + S+E+VI       +  
Sbjct: 642 NVRTRDNKVHGERSVEDVILRFKKLQNER 670


>gi|223939080|ref|ZP_03630964.1| prolyl-tRNA synthetase [bacterium Ellin514]
 gi|223892240|gb|EEF58717.1| prolyl-tRNA synthetase [bacterium Ellin514]
          Length = 576

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 115/237 (48%), Positives = 165/237 (69%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++  +P L+E P +AEI SHKL+LR G++ + S G+Y+++PLG +AL  V  I+REE
Sbjct: 1   MRWTQTLIPTLKETPAEAEITSHKLLLRAGLVRKLSGGLYTFMPLGLRALRKVEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+ +P +Q  ++W +SGRY +  +   ++ DR  K  I GPTHEEV+T +   
Sbjct: 61  MNRAGALELLMPAMQPPEIWEKSGRYVTASEVFFKVRDRAKKEWILGPTHEEVITTLVAG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP  FYQIQ KFRDE+RPRFG+MR++EF+MKDAYSFD+T E ++ SY KM+ +
Sbjct: 121 EISSYRQLPKNFYQIQTKFRDEIRPRFGLMRAKEFIMKDAYSFDVTDELAQISYQKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GLK++ + A++G +GG  SHEF+V A+TGE +V   +   ++    E  
Sbjct: 181 YTRIFQRCGLKAVAVEADTGVMGGKFSHEFMVPAETGENEVVYCEAC-NYSANIEKA 236



 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 108/226 (47%), Gaps = 5/226 (2%)

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVS 278
           V+      D    +   + D     N  VE+         D+ + ++ ++          
Sbjct: 352 VYADTQLRDAAEMTTGANEDGFHYRNVSVERDIK-VNHWVDLRSVQVSEACSSCGKPLKI 410

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R IEVGH+F  GTKYS  + A F   DGK     MG YGIG  R + A+IE S+D  GI
Sbjct: 411 QRAIEVGHVFKLGTKYSEKLGALFLDEDGKQKPAVMGCYGIGVTRTLQAIIEQSNDKDGI 470

Query: 339 IWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IWP SVAP+ + +  +  A         EKIY+ L   G DV  DD  E+ G +F  ++L
Sbjct: 471 IWPVSVAPYTVCITPLGVAAGSATMVLAEKIYSELVAQGIDVILDDRDERPGVKFKDSEL 530

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +GFP+++ +G K ++  +VE+K R  G+   +  EE +        
Sbjct: 531 VGFPIRLGIGEKSLAKGEVELKLRG-GVLTPVKTEEAVAKILETIK 575


>gi|116070824|ref|ZP_01468093.1| Threonyl-tRNA synthetase, class IIa [Synechococcus sp. BL107]
 gi|116066229|gb|EAU71986.1| Threonyl-tRNA synthetase, class IIa [Synechococcus sp. BL107]
          Length = 615

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 145/439 (33%), Gaps = 36/439 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD       L L + +  +   G+  W P G +    +    R+     G   +  
Sbjct: 204 EALRRDHRRLGKDLDLFS-IEDEAGAGLVFWHPRGARMRLLIEDFWRQAHFEGGYELLYT 262

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +    LW  SG  D Y + M      +++     P +       + S ++SYR LP  
Sbjct: 263 PHVADISLWKTSGHLDFYAESMFGPMQVDEREYQLKPMNCPFHVLTYASKLRSYRELPIR 322

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           + ++   +R E      G+MR R F   DA+ F L  + S     ++     RI      
Sbjct: 323 WAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCLPDQISDE-ILRILDLTERILSTFDF 381

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            +  +   + P                      S+   D          +       I E
Sbjct: 382 NNYEINLSTRPEKS-----------------IGSEAVWDLATKGLTEALERKGWNYKIDE 424

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+   K+ D++    + S   ++      FG  Y             K  
Sbjct: 425 GGGAFYGPKIDL---KIEDAIGRMWQCSTIQLDFNLPERFGLDY-------VAADGSKQQ 474

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + +     G++     ++  ++ G    W        + +          +   E++  
Sbjct: 475 PIMIHRAIFGSLERFFGIMTENYAGDFPFWLAPEQIRLLPVT------DDVQPYAEQLLD 528

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G     D  G+++G      + +  P+  ++G+K    + V ++ R  G     S
Sbjct: 529 QLKTAGIRATIDQSGDRLGKIIRTGEQMKIPVLAVIGAKEAEQNAVSLRSRRDGDLGVTS 588

Query: 431 LEEVINYASHRFSNNRPVL 449
           ++ ++N A    +  +P L
Sbjct: 589 VDALLNAAKWANTERQPGL 607


>gi|187918575|ref|YP_001884138.1| threonyl-tRNA synthetase [Borrelia hermsii DAH]
 gi|238689297|sp|B2S162|SYT_BORHD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119861423|gb|AAX17218.1| threonyl-tRNA synthetase [Borrelia hermsii DAH]
          Length = 583

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 156/448 (34%), Gaps = 39/448 (8%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L + +E  R D      +L L +        G+  + P G +    +    REE  +
Sbjct: 172 KAYLKLREEIKRRDHRKLGRELDLFSVH-EDIGPGLIFFHPNGARIRAIIEDFWREEHFK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y + M    + +       P +      I+ +   
Sbjct: 231 NGYDVLFTPHIGKSCLWETSGHLDFYKESMFEKMEMDKSNYYVKPMNCPFHIAIYNTGKH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G MR R F   DA+      +       ++    L
Sbjct: 291 SYRDLPFRWAELGTVYRYEKIGALHGTMRVRGFTQDDAHIICAYEQVKSE-VQEVLRFAL 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++++ G   +     + P                  +    KD  +  +        D+
Sbjct: 350 YMWNQFGFADLKAYLSTKP-----------------EKAVGDKDDWEMSVKVLEEALIDL 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A Y    D+   K+ DSL    ++S    +    F    ++ +  +A  
Sbjct: 393 NIAYDIDEGGGAFYGPKIDL---KIIDSLGREWQMSTIQFD----FNLPERFKMTYTAE- 444

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +     +    +G++     ++   + G   +W   +    I + N+        
Sbjct: 445 --DGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPVWLAPLQVIIIPVNNV------VE 496

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   +I +     G  +  D D   ++ ++         P   I+G K V + K+ I+ R
Sbjct: 497 EYALEILSLFKNEGIRIKLDNDCNMRMNAKIRQYQSKKVPYMFIIGEKEVVEGKISIRTR 556

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
                  + L+E + +   +  N + +L
Sbjct: 557 TNDQINGLELKEALEFVRLKVKN-KEIL 583


>gi|15889049|ref|NP_354730.1| threonyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
 gi|22654115|sp|Q8UEL1|SYT_AGRT5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15156846|gb|AAK87515.1| threonyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
          Length = 667

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 144/449 (32%), Gaps = 46/449 (10%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      ++ L      +   G+  W   G +    + A +R     T 
Sbjct: 234 YLHVLAEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHGKGWRMFQTLTAYMRRRLANT- 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEML-----------RLADRNDKAMIYGPTHEEVM 114
             E++ P +    LW  SG +  Y + M               + + +     P +    
Sbjct: 291 YQEVNAPQVLDKSLWETSGHWGWYQENMFAVKSAHAFTHPDDKEADQRVFALKPMNCPGH 350

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHS 173
             IF+  +KSYR +P    +     R E      G+MR R F   DA+ F    + +   
Sbjct: 351 VQIFKHGLKSYREMPVRLAEFGNVHRYEASGALHGLMRVRGFTQDDAHVFCTEEQMAAEC 410

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                   L ++   G   I ++  + P     S +    A++   +V   K   +    
Sbjct: 411 LRIN-DLILSVYEDFGFSEIVVKLSTRPEKRVGSDDLWDRAESVMLEVL--KTIEEQSGG 467

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
              T           +    A Y    +     L D++    +     ++      FG  
Sbjct: 468 RIKTGI---------LPGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG-- 513

Query: 294 YSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
                 A +   + +      +     G+M     ++  +  G   +W   +     ++ 
Sbjct: 514 ------AFYIDQNSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPLQVVVATIT 567

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                     D   ++   L + G  V  D   E+I  +     +   P+ ++ G K   
Sbjct: 568 ------SDADDYGREVAEALREAGMAVETDFRNEKINYKVREHSVTKVPVIIVCGRKEAE 621

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V I+   +  +  MSLEE I      
Sbjct: 622 ERTVNIRRLGSQNQTSMSLEEAITSLVDE 650


>gi|50555740|ref|XP_505278.1| YALI0F11231p [Yarrowia lipolytica]
 gi|49651148|emb|CAG78085.1| YALI0F11231p [Yarrowia lipolytica]
          Length = 755

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/452 (15%), Positives = 156/452 (34%), Gaps = 41/452 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++   + +   RD      +  L   + +  S G   WLP G +    +  ++R+E  
Sbjct: 327 MTEHLKFLEEAAKRDHRKIGREQELF--LFNDMSPGSCFWLPHGARIYSALTDLLRKEYR 384

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW  SG + +Y  +M    +   +     P +      +F++  
Sbjct: 385 KRGYEEVITPNMYNSKLWETSGHWQNYKDDMFTF-EIEKEKFGLKPMNCPGHCLMFKARD 443

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP+      +  R+E      G+ R R F   DA+ F +  +        +F   
Sbjct: 444 RSYKELPWRVADFGVIHRNEASGALTGLTRVRRFQQDDAHIFCMPSQIQSE-ITGIFDFL 502

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +I+   G                   EF +   T   +     +  +          + 
Sbjct: 503 KKIYTIFG------------------FEFKMKLSTRPDKYVGEIETWNDAEKQLEEALNK 544

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             +   +     A Y    D+    + D+L    + +   ++    F    ++ L    +
Sbjct: 545 WGANWELNPGDGAFYGPKIDI---VISDALHRWHQCATIQLD----FQLPNRFDLNFKNS 597

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESS----HDGKGIIWPDSVAPFKISLINIKAH 357
               +G+     + +  +   R +    E       +     WP  ++P ++ +I +   
Sbjct: 598 AAMGEGEADSAALYTRPVMIHRAIYGSFERMTAILCEHFAGKWPFWLSPRQVLVIPVGPK 657

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +++   L   G     D+    +  +   A L  +    IVG +  +   V 
Sbjct: 658 ---YNDYAQEVRDELVDAGFFADVDNGPNTLQKKVREAQLKQYNFTFIVGEEEKTAKSVN 714

Query: 418 IKHRLTGIRE----DMSLEEVINYASHRFSNN 445
           I+ R    ++     + L+EVI+       + 
Sbjct: 715 IRDRDDQSKQAKAASIPLDEVISRLHKLKDSK 746


>gi|260424720|ref|ZP_05778980.1| proline--tRNA ligase [Dialister invisus DSM 15470]
 gi|260402944|gb|EEW96491.1| proline--tRNA ligase [Dialister invisus DSM 15470]
          Length = 576

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 112/237 (47%), Positives = 155/237 (65%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK + P L+E P DA + SH+ ML+ GM+ + S G+Y++LPL  +++  V  I+REE
Sbjct: 3   MLASKLYSPTLREIPSDAVVVSHQYMLKAGMMRKVSNGLYAFLPLALRSVRKVEDIVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G+ E+ +P  Q A++W +S R+D YG+EM +L DR+      GPTHEE++T + + 
Sbjct: 63  MNAIGSQEILMPITQPAEIWKQSERWDVYGEEMFKLNDRHGHEYCLGPTHEELVTVLAKM 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY+ LP + YQIQ K+RDE RPRFG+MRSREF+MKDAY+FD+  EG    Y+ M+ +
Sbjct: 123 DTSSYKQLPVSLYQIQNKYRDEKRPRFGLMRSREFIMKDAYTFDMDEEGLDRQYHLMYDA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R GL   P+ A+SG IGG  SHEF V+AD+GE  +   KD  DF    E  
Sbjct: 183 YTRIFTRCGLHFRPVVADSGAIGGSGSHEFEVIADSGEADIVYCKDC-DFAANIEAV 238



 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 5/233 (2%)

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           AD  E  V  +   M+      N      + +N   +           +      D  P+
Sbjct: 341 ADNFEIIVDTTVMEMEDACCGANAVDKHYVHVNPKRDFGDV---RVETIRLITAEDCCPK 397

Query: 274 NKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
              +    +GIEVG +F  GTKYS  +  T+   DGK H + MG YGIG  R VAA IE 
Sbjct: 398 CGGMIELKKGIEVGQVFKLGTKYSEKLGCTYLDRDGKTHPMVMGCYGIGITRTVAASIEQ 457

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           +HD  GIIWP ++AP+++ ++     D+   +A   +Y ++     +V  DD  E+ G +
Sbjct: 458 NHDKDGIIWPVAIAPYEVVIVPANNKDEGVMNAARHLYDKMEDCRDEVILDDRDERAGIK 517

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           F  ADL+G+P++V +G K+     VE++ R +G+  +++L +           
Sbjct: 518 FKDADLIGYPIRVTIGKKWKESGLVEVRLRRSGVVSEVALADCKTKVLEMLEE 570


>gi|156838419|ref|XP_001642915.1| hypothetical protein Kpol_411p2 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113495|gb|EDO15057.1| hypothetical protein Kpol_411p2 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 729

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 156/446 (34%), Gaps = 42/446 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +  L   + ++ S G   WLP G +    +  ++R E  + G 
Sbjct: 313 LKFLEEAAKRDHRRLGKEQELF--LFNEMSPGSCFWLPHGTRIYSTLVDMMRTEYRKRGY 370

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + ++ LW  SG + +Y + M       +      P +      +F+S  +SYR
Sbjct: 371 EEVITPNMYNSKLWETSGHWANYKENMFTFEVEKET-YGLKPMNCPGHCLMFKSRERSYR 429

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP+      +  R+E      G+ R R F   DA+ F       +        +     
Sbjct: 430 ELPWRVADFGVIHRNEYSGALSGLTRVRRFQQDDAHIFCT-----QDQIEGEIENIFNFL 484

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             +                    EF +   T   +     +  +       +  +     
Sbjct: 485 QFVYGVF--------------GFEFKMELSTRPEKYVGELETWNNAEAKLQSALEKWGGD 530

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             +     A Y    D+    + D+L    + +   ++    F    ++ L   A     
Sbjct: 531 WELNPGDGAFYGPKIDIM---ISDALKRWHQCATIQLD----FQLPNRFELEFKAKDNQE 583

Query: 306 D-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +   +  V +    +G++  + A++    +     WP  ++P ++ ++ +       ++ 
Sbjct: 584 NENYERPVMIHRAILGSVERMTAILT---EHFAGKWPFWLSPRQVLVVPVGVK---YQEY 637

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L   G     D  G  +  +     LL +    IVG   +++  V I++R   
Sbjct: 638 AQEVRDKLHAAGFYADVDLSGNTLQKKVRTGQLLKYNFIFIVGEDELTNKTVNIRNRDIV 697

Query: 425 IRE----DMSLEEVINYASHRFSNNR 446
            ++     ++L+ V+   S      R
Sbjct: 698 EQQGKNAAIALDLVVEQLSSLKQEKR 723


>gi|227549046|ref|ZP_03979095.1| prolyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078900|gb|EEI16863.1| prolyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 604

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 113/323 (34%), Positives = 164/323 (50%), Gaps = 4/323 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G + + + G+YSWLPLG + L  +  ++REE 
Sbjct: 15  RLSELFLRTLREDPADAEVPSHKLLVRAGYVRRAAPGVYSWLPLGLRTLRKIETVVREEM 74

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA+E+  P L   + + ++ R+  YG ++ RL DR    M+ GPTHEE+ T   +S 
Sbjct: 75  DAMGALELLFPALLPREPYEQTNRWTEYGDDLFRLKDRKGADMLLGPTHEEMFTVAVKSM 134

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T EG + SY K   +Y
Sbjct: 135 FSSYKDFPVTLYQIQTKYRDEARPRAGILRGREFVMKDSYSFDMTDEGLEQSYQKHRSAY 194

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF R+G++     A SG +GG  S EF+  +D+GE     S    D+    E      
Sbjct: 195 QRIFDRVGIRYEICEATSGAMGGSASEEFLAYSDSGEDTFVISTAG-DYAANVEAVVTVA 253

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPE-NKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   +     Y+       E L D   E    V  R ++                 
Sbjct: 254 PEPRPIEGQPEAQEYSTPRSETIEALVDWANEQGVLVDGRPVQASDT--LKCMMIKVDDP 311

Query: 301 TFKGADGKDHYVQMGSYGIGAMR 323
                DG     ++    I   R
Sbjct: 312 RVLDDDGAPVGPRLTGVLIPGDR 334



 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 91/189 (48%), Gaps = 6/189 (3%)

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +    +  D  P         RGIE+GHIF  G KY+  M        GK     MG
Sbjct: 417 GFIEAAEVREGDPSPTGNGTVKLARGIELGHIFQLGRKYTEAMDVQILDEGGKRAVPTMG 476

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R++A V E  HD KG++WP ++AP+++ ++     D     A E I   L   
Sbjct: 477 SYGIGVSRMMAVVAEQRHDEKGLVWPVAIAPYQVHVVVAN-KDAAALQAGEDIAGELDAA 535

Query: 376 GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD  +   G +F  A+LLG P  VI+G +  ++  VE++ R  G   +++  EV
Sbjct: 536 GLEVLFDDRPKTSPGVKFKDAELLGMPFIVILG-RSFAEGIVELRIRG-GETLEVASAEV 593

Query: 435 INYASHRFS 443
           +       +
Sbjct: 594 VAKVRELVA 602


>gi|195443008|ref|XP_002069231.1| GK21088 [Drosophila willistoni]
 gi|194165316|gb|EDW80217.1| GK21088 [Drosophila willistoni]
          Length = 699

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 153/436 (35%), Gaps = 41/436 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   ++ E  + G  E+ 
Sbjct: 294 EEAAKRDHRKIGREQELF--FFHELSPGSCFFQPRGAHIYNTLMNFMKAEYRKRGFQEVI 351

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW+ SG +  Y + M       +K     P +      IF +  +S+R LP 
Sbjct: 352 SPNIYNAKLWMTSGHWQHYAENMFSFEVEKEK-FALKPMNCPGHCLIFDNRNRSWRELPL 410

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +               +++  G
Sbjct: 411 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTPDQIKSEM-KGCLDFLHHVYNIFG 469

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F ++  T   +     +  +    +     D+        
Sbjct: 470 FS------------------FQLVLSTRPEKYLGELEQWNDAEKALAESLDEFGIPWKEN 511

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    +++L   A       K 
Sbjct: 512 PGDGAFYGPKIDI---TIMDALKRAHQCATIQLD----FQLPIRFNLNYIA---DDGEKK 561

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +     WP  ++P ++ ++ +        +  + + 
Sbjct: 562 RPVIIHRAILGSVERMIAILT---ENYAGKWPFWLSPRQVMVVPVGP---AYDEYAQSVR 615

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R   +  +
Sbjct: 616 EQLHAAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGE 675

Query: 429 MSLEEVINYASHRFSN 444
           +S+ E+I+    +  N
Sbjct: 676 VSVAELISKL-QKIRN 690


>gi|306836356|ref|ZP_07469334.1| proline--tRNA ligase [Corynebacterium accolens ATCC 49726]
 gi|304567716|gb|EFM43303.1| proline--tRNA ligase [Corynebacterium accolens ATCC 49726]
          Length = 594

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 105/282 (37%), Positives = 158/282 (56%), Gaps = 7/282 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G + + + GIY+WLPLG + L  +  ++R+E 
Sbjct: 9   RLSELFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGIYTWLPLGLRTLRKIEDVVRQEM 68

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM  P L   + + ++ R+  YG  + RL DR +  ++ GPTHEE+  +  +  
Sbjct: 69  DAIGGQEMLFPALLPREPYEKTNRWVEYGPNLFRLQDRKNADLLLGPTHEEMFANAVKDM 128

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR GV+R REF+MKD+YSFD+  EG   SY +   +Y
Sbjct: 129 YSSYKDFPVTLYQIQTKYRDEERPRAGVLRGREFVMKDSYSFDMNDEGLDSSYARHRKAY 188

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
             +F RL +     +A SG +GG  S EF+ L++ GE  +F      D+    E      
Sbjct: 189 QNVFDRLEIDYAICKATSGAMGGSASEEFLALSEVGE-DLFVRSTEGDYAANVEAVVTQA 247

Query: 240 --DDIISLNSIVEQWTAPYAATSD--VHNEKLFDSLPENKRV 277
             +  I+     +++  P AAT +  VH  K  D   +   V
Sbjct: 248 PPEKDIAGQPAAKEYRTPDAATIEALVHWAKTEDIAVDGHEV 289



 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 6/199 (3%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
            V           +    K  D  P+        RGIE+GHIF  G KY+          
Sbjct: 398 CVAGRDFHVDEFVEAAEVKEGDPAPDNQGTLALQRGIELGHIFQLGRKYTEAFDVQILDE 457

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           +GK     MGSYGIG  R++A + E  HD KG+ WP +VAP+++ +      D    +A 
Sbjct: 458 NGKRAIPTMGSYGIGISRMLAVLAEQRHDDKGLNWPVAVAPYQVHVAVAN-KDAAAMEAG 516

Query: 366 EKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +K+   LS+ G +V +DD      G +F  A+LLG P   IVG +   D  +E++ R   
Sbjct: 517 DKLVEELSQAGLEVLFDDRPKVSPGVKFKDAELLGMPFVAIVG-RAFKDGIIELRIRG-Q 574

Query: 425 IREDMSLEEVINYASHRFS 443
              ++  +E+++       
Sbjct: 575 ETLEVPADEIVDKLLELVR 593


>gi|257459695|ref|ZP_05624804.1| prolyl-tRNA synthetase [Campylobacter gracilis RM3268]
 gi|257443120|gb|EEV18254.1| prolyl-tRNA synthetase [Campylobacter gracilis RM3268]
          Length = 572

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 120/320 (37%), Positives = 163/320 (50%), Gaps = 22/320 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F P L+E PRDA + SH L++R G I Q   G+Y++LPLG+  L+ + A+IR+E
Sbjct: 1   MKFSKLFAPSLKEAPRDAVLPSHALLIRAGFIEQLGSGLYNFLPLGKIVLERICAVIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+S   + SAD W +SGRY  YGKE+LR  DR D   +  PT+EE    +   
Sbjct: 61  MDAAGAQEVSFSVVTSADAWKKSGRYAKYGKELLRFKDRKDNDFVLSPTNEEAAVLMVAD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPRFG++R REF MKDAYSF       K  +  M  +
Sbjct: 121 KITSYKQLPLNIYQINTKFRDEARPRFGLLRGREFTMKDAYSFHADAADMKREFEVMRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    + A+SG IGG  S EF+VLAD GE  +   K   ++    E     
Sbjct: 181 YSRIFTRLGLNFRTVDADSGAIGGSGSKEFMVLADNGEDDIVVCKRC-EYAANIE----- 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF----YFGTKYSL 296
                        A  A  +        D + + K  + + I+    F     F T  ++
Sbjct: 235 ------------AARRAPKTTNAAAPETDGMMKFKTPAMKTIDAVAEFFKVDKFYTIKAV 282

Query: 297 PMSATFKGADGKDHYVQMGS 316
              A ++       +   G 
Sbjct: 283 IKKALYEDRSEIVAFFIRGC 302



 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/192 (35%), Positives = 105/192 (54%), Gaps = 4/192 (2%)

Query: 257 AATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           +  +D+    + D+ P    +    +GIEVGHIF  GT+YS PM A F  A+GK     M
Sbjct: 382 SRFADLAAVGVGDACPCCGGELSITKGIEVGHIFQLGTRYSEPMGARFLDANGKARAFYM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIGA R++A  IESSHD +G +WP  +APF++ +I     D    +  EK+Y +  +
Sbjct: 442 GCYGIGASRLIAVAIESSHDERGCVWPRELAPFELEIIISNHKDAAAVEFAEKLYEQCRE 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V  DD  E+ G +    +L+GFP  V+VG K +++  VE   R    R+ +S +E+
Sbjct: 502 RGIRVLLDDRAERFGVKMNDFELMGFPYAVLVG-KALAERSVEFITRAGLKRQSVSADEI 560

Query: 435 INYA-SHRFSNN 445
           +++        N
Sbjct: 561 LSFIERKLIEKN 572


>gi|50954739|ref|YP_062027.1| threonyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71657985|sp|Q6AFC3|SYT_LEIXX RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|50951221|gb|AAT88922.1| threonyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 695

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 63/451 (13%), Positives = 130/451 (28%), Gaps = 49/451 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      +L L +    +   G+  + P G      +   +R+     G   
Sbjct: 271 RMEEAAKRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIIRKEIEDYMRDRLIANGYEM 329

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTD 116
           ++ P +    L+  S   + Y + M                 R  +     P +  +   
Sbjct: 330 VNTPHITKGHLFETSQHLNWYREGMFPPMHLDEERDAEGNVTRQGQDYYLKPMNCPMHNL 389

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP    +    +R E      G+ R R     DA+ +    +     + 
Sbjct: 390 IFRSRGRSYRELPLRLSEFGTVYRYEKSGTLSGLTRVRGLTQDDAHIYVTEEQIRDE-FA 448

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +     L      GL    +   +                    +   S +  +    + 
Sbjct: 449 RQLQFVLETLRGYGLTDFYLELST----------------KDPEKYVGSDESWETATETL 492

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                +            A Y       + +  D++    ++S   ++            
Sbjct: 493 REVAVESGLELVDDPGGAAFYGPKI---SVQARDAIGRTWQLSTVQLDFNQP-------- 541

Query: 296 LPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  ADG       +    +G++    A++   H G   +W        I +   
Sbjct: 542 ELFELEYNAADGTRKQPAMIHRALLGSIERFFAILLEHHAGAFPVWLAPTQVVGIPVA-- 599

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      + + A+L   G     D   +++  +         P Q+IVG +  S  
Sbjct: 600 ----DAYGPFLDDVIAQLRARGVRAEVDHSDDRMQKKIRTHTKAKVPFQLIVGEEDASAG 655

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V  + R       ++++E I         +
Sbjct: 656 TVSFRFRDGTQLNGVAVDEAIERIVASIQTH 686


>gi|91087799|ref|XP_967345.1| PREDICTED: similar to RH56418p [Tribolium castaneum]
          Length = 707

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 148/432 (34%), Gaps = 42/432 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD         L     H+ S G   + P G    + +   I++E  + G  E+ 
Sbjct: 302 EEAAKRDHRKIGRDQELF--FFHELSPGSCFFQPRGAHIYNTLINFIKKEYRKRGFQEVI 359

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW  SG +  Y   M    D         P +      IF +  +S+R LP 
Sbjct: 360 SPNIFNAKLWQVSGHWAHYADNMFSF-DVEKDKFALKPMNCPGHCLIFDNRTRSWRELPL 418

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F       +            ++   G
Sbjct: 419 RLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCALEHIKQE-IKGALDFLSHVYSVFG 477

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F V+  T   +        +    + +   DD  +  S+ 
Sbjct: 478 FT------------------FNVVLSTRPEKYLGDLAMWEQAEKALSEGLDDFGAPWSVN 519

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    +     ++    F    ++    + ++    G+ 
Sbjct: 520 PGDGAFYGPKIDI---TVHDALKRAHQCGTIQLD----FQLPIRF----NLSYVSESGEK 568

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +    +G++  + A++    +  G  WP  ++P +  +I +        +  + +
Sbjct: 569 KRPVIIHRAILGSVERMIAILT---ESCGGKWPFWISPRQAMVIPVGP---TYDEYAQDV 622

Query: 369 YARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             +L + G     D D G+ +  +   A L  F   ++VG K  S   V ++ R   +  
Sbjct: 623 KKKLYEAGFMAEVDTDAGDTMNKKIRNAQLAQFNFILVVGEKERSSQTVNVRTRDNIVHG 682

Query: 428 DMSLEEVINYAS 439
           ++S+E +I    
Sbjct: 683 EISVEGLIEKFK 694


>gi|87124051|ref|ZP_01079901.1| threonyl-tRNA synthetase [Synechococcus sp. RS9917]
 gi|86168620|gb|EAQ69877.1| threonyl-tRNA synthetase [Synechococcus sp. RS9917]
          Length = 612

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 66/432 (15%), Positives = 132/432 (30%), Gaps = 37/432 (8%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +    +E   RD       L L + +  +   G+  W P G +    +    R+     G
Sbjct: 198 YQRRKEEALRRDHRRLGKDLDLFS-IEDEAGAGLVFWHPRGARMRLLIEDFWRQAHFEGG 256

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +    LW  SG  D Y + M      +++     P +       + S ++SY
Sbjct: 257 YDLLYTPHVADIGLWKTSGHLDFYSESMFGPMQVDEREYQLKPMNCPFHVLTYASRLRSY 316

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + ++   +R E      G+MR R F   DA+ F L  + S     ++      I
Sbjct: 317 RELPIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCLPEQISDE-ILRILNLTETI 375

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                 ++  +   + P                           D          +    
Sbjct: 376 LSAFDFRNYEINLSTRPEKS-----------------IGDDAVWDLATQGLIEALERKGW 418

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    D+   K+ D++    + S   ++    F    +++L   A    
Sbjct: 419 AYKVDAGGGAFYGPKIDL---KIEDAIGRMWQCSTIQLD----FNLPERFALDYVAA--D 469

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              +   +   +      R    + E+                                 
Sbjct: 470 GSKQRPIMIHRAIFGSLERFFGIMTENYAGDFPFWLAPEQIRLLPVT-------DEVLAD 522

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  +L   G     D  GE++G      + +  PL  ++G+K      V ++ R  G
Sbjct: 523 AQQLSDQLRAAGIRATVDRSGERLGKLIRTGEQMKIPLLAVIGAKEAEQGSVSLRSRRDG 582

Query: 425 IREDMSLEEVIN 436
               ++ + +I 
Sbjct: 583 DLGSVNRKALIE 594


>gi|317487879|ref|ZP_07946471.1| threonyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|325830610|ref|ZP_08164031.1| threonine--tRNA ligase [Eggerthella sp. HGA1]
 gi|316913005|gb|EFV34522.1| threonyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|325487356|gb|EGC89798.1| threonine--tRNA ligase [Eggerthella sp. HGA1]
          Length = 637

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 147/443 (33%), Gaps = 47/443 (10%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +L + T M      G+  +LP G + +  +   +R +    G 
Sbjct: 229 LRNLEEAEKRDHRKLGRELGIYT-MDPLAGVGLPMYLPKGARVIRTMQEWLRRDLYERGY 287

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFR 119
            E+  P + +AD+W  SG Y  Y + M           D         P +      +++
Sbjct: 288 EEVITPHVYNADVWKTSGHYGFYKENMYFFNINEGTDEDPRLTEYAVKPMNCPGHVMLYK 347

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S + SYR+LP  +++    +R E+     G++R+R F   DA+ F    +          
Sbjct: 348 SELHSYRDLPLRYFEFGTVYRHEMSGVVHGLLRARGFTQDDAHVFCTRDQVVDEVVAI-L 406

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                I    G +                        T   +   + D  +    +    
Sbjct: 407 DLVDHIMSTFGFQYE------------------AEISTRPEKSIGTDDMWEHATNALKEA 448

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                    I E   A Y    D+   K+ D++    + S   ++               
Sbjct: 449 CARHELAYDINEGDGAFYGPKIDI---KVKDAIGRTWQCSTVQVDFNMP--------ERF 497

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T++  D  ++    +     G++     ++   + G   +W   V    + L      
Sbjct: 498 ELTYRTEDNTEERPWMLHRAIFGSIERFLGILIEHYAGALPLWLAPVQVAVLPLA----- 552

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +A  ++  +L   G  +   D  E +  + A A     P  V++G K + +  V 
Sbjct: 553 -DRHNEAAHELAKQLKAAGGRIEVYDQNEPMRVKIAKAQSQKIPYMVVLGDKEIENGTVS 611

Query: 418 IKHRLTGIREDMSLEEVINYASH 440
           ++ R  G      +E+++     
Sbjct: 612 VRERHEGDLGAWPVEQLVEKLRE 634


>gi|314933442|ref|ZP_07840807.1| proline--tRNA ligase [Staphylococcus caprae C87]
 gi|313653592|gb|EFS17349.1| proline--tRNA ligase [Staphylococcus caprae C87]
          Length = 567

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N++ I+REE
Sbjct: 1   MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T + R 
Sbjct: 61  MESIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ K+RDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 ELKSYKRLPLTLFQIQSKYRDEKRPRFGLLRGREFIMKDAYSFHADEESLDATYQDMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG+ +HEF+ L++ GE  +    +  D+    E  
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGNHTHEFMALSEIGEDTIVY-SNESDYAANIEKA 236



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 78/231 (33%), Positives = 117/231 (50%), Gaps = 3/231 (1%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENK 275
            E +++      D        + D    +N+ VE  +            E    S    K
Sbjct: 339 KEIKIYADNYVKDLNNLVIGANEDGYHYVNANVERDFNIDEYGDFRFILEGEMLSDGSGK 398

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E ++D 
Sbjct: 399 AQFAEGIEVGQVFKLGTKYSEAMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNNDE 458

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GIIWP SV PF + LI I       R+  +++YA+L+    DV +DD  E+ G +F  A
Sbjct: 459 NGIIWPKSVTPFDLHLITINPKKDDQRELGDQLYAQLNDK-FDVLYDDRKERAGVKFNDA 517

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G PL+V+VG +   +  VE+K RL G  E++ + ++ NY    +   +
Sbjct: 518 DLIGLPLRVVVGKR-AEEGVVEVKQRLNGESEEIHVNDLENYLKDLYDKLK 567


>gi|194765983|ref|XP_001965104.1| GF21565 [Drosophila ananassae]
 gi|190617714|gb|EDV33238.1| GF21565 [Drosophila ananassae]
          Length = 749

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 72/432 (16%), Positives = 148/432 (34%), Gaps = 40/432 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   ++ E  + G  E+ 
Sbjct: 344 EEAAKRDHRKIGREQELF--FFHELSPGSCFFQPRGAHIYNTLMDFMKAEYRKRGFQEVI 401

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW+ SG +  Y + M       +K     P +      IF +  +S+R LP 
Sbjct: 402 SPNIYNAKLWMTSGHWQHYAENMFSFEVEKEK-FALKPMNCPGHCLIFDNRNRSWRELPL 460

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +               ++   G
Sbjct: 461 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAPEQIKSEM-KGCLEFLKHVYTIFG 519

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F ++  T   +     +  +    +     ++        
Sbjct: 520 FS------------------FQLVLSTRPEKYLGELEQWNDAEKALAESLNEFGMPWKEN 561

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    +++L   A       K 
Sbjct: 562 PGDGAFYGPKIDI---TIMDALKRAHQCATIQLD----FQLPIRFNLSYIA---DDGEKK 611

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +     WP  ++P ++ ++ +           + + 
Sbjct: 612 RPVIIHRAILGSVERMIAILT---ENFAGKWPFWLSPRQVMVVPVGP---AYDQYAQSVR 665

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R   +  +
Sbjct: 666 DQLHAAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGE 725

Query: 429 MSLEEVINYASH 440
           +S+ E+I     
Sbjct: 726 VSVAELITKLQK 737


>gi|226306390|ref|YP_002766350.1| threonyl-tRNA synthetase [Rhodococcus erythropolis PR4]
 gi|259516659|sp|C0ZZ26|SYT_RHOE4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226185507|dbj|BAH33611.1| threonyl-tRNA synthetase [Rhodococcus erythropolis PR4]
          Length = 685

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 65/451 (14%), Positives = 132/451 (29%), Gaps = 50/451 (11%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      +L L +    +   G+  + P G      +    R      G
Sbjct: 251 YLELLAEAERRDHRKLGTELDLFS-FPDELGSGLPVFHPKGGIIRTEMENYSRSRHIEAG 309

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              ++ P +    L+  SG  D Y   M                 +  +     P +  +
Sbjct: 310 YEFVNTPHITKGHLYEVSGHLDWYRDGMFPAMHVDEELNEDGTVRKPGQDYYLKPMNCPM 369

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFR+  +SYR LP   ++    +R E      G+ R R     DA+ +    +    
Sbjct: 370 HNLIFRARGRSYRELPLRLFEFGSVYRYEKSGVIHGLTRVRGMTQDDAHIYCTREQMRDE 429

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                    L +    GL    +   +                    +   S D  +   
Sbjct: 430 L-TTTLQFVLNLLKDYGLDDFYLELST----------------KNPDKFVGSDDVWEEAT 472

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +     +             A Y       + ++ D+L    ++S   ++    F    
Sbjct: 473 ATLAEVGEASGLTLVPDPGGAAFYGPKI---SVQVKDALGRTWQMSTIQLD----FNLPE 525

Query: 293 KYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       + G DG K   V +     G++     V+   + G    W   V    I +
Sbjct: 526 RF----ELEYTGNDGVKTRPVMIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPV 581

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                  +   D    +  +L   G     D   +++  +         P  ++ G + V
Sbjct: 582 A------EAFADHLFDVTKKLKAAGVRAEVDFSDDRMQKKIRNHTTQKVPFMLLAGERDV 635

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               V  + R       + +++ +   +   
Sbjct: 636 EAGAVSFRFRDGTQINGIPVDDAVRIITEWI 666


>gi|260436778|ref|ZP_05790748.1| prolyl-tRNA synthetase [Synechococcus sp. WH 8109]
 gi|260414652|gb|EEX07948.1| prolyl-tRNA synthetase [Synechococcus sp. WH 8109]
          Length = 597

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 115/277 (41%), Positives = 157/277 (56%), Gaps = 6/277 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +AEI SH+L+LR G I +   GIY++LPL  + L  + A++REE
Sbjct: 5   MRVSRLLLVTLRDIPAEAEITSHQLLLRAGYIRRVGSGIYAYLPLMWRVLQKITAVVREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            NR GA E  +P L  A+LW +SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 65  MNRAGAQETLLPQLHPAELWQKSGRWQGYTAGEGIMFHLEDRQGRELGIGPTHEEVITSL 124

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  +    + +Y  M
Sbjct: 125 AGELLRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHASEADLRETYGAM 184

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y RIF R GL ++P+ A+SG IGG  S EF+V AD GE  +  S D        +  
Sbjct: 185 DQAYRRIFERCGLDAVPVDADSGAIGGAASQEFMVTADAGEDLILISDDGQYAANQEKAV 244

Query: 238 DFDDIISLNSIVEQWTAP---YAATSDVHNEKLFDSL 271
                 S      + + P     +   + N K +D  
Sbjct: 245 SIPSAASPLPDGPEESIPTPGLGSIESLCNAKGWDPS 281



 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/185 (34%), Positives = 93/185 (50%), Gaps = 4/185 (2%)

Query: 261 DVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N +  D     P+++    RGIEVGHIF  G KYS  M + F   +GK     MG Y
Sbjct: 412 DLRNARAGDVCQHNPKSRLTEKRGIEVGHIFQLGRKYSQAMESRFTNENGKTEPFWMGCY 471

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+  A +E  HD  GI WP ++APF+  ++     D +     E +YA L   G 
Sbjct: 472 GIGVSRLAQAAVEQHHDDSGICWPTAIAPFEAIVVVANIQDDIQAQLGEALYAELQAAGV 531

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD  E+ G +F  ADL+G P +++VG +  S+  VE+  R +   + +   E +  
Sbjct: 532 DVLLDDRKERAGVKFKDADLIGIPWRIVVG-RDASEGTVELVCRSSREVQKLPHAEAVTC 590

Query: 438 ASHRF 442
                
Sbjct: 591 LIKAL 595


>gi|313681237|ref|YP_004058975.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154097|gb|ADR32775.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 602

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/440 (16%), Positives = 162/440 (36%), Gaps = 38/440 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      ++ L T    +   G   WLP G +    +  ++ +   + G
Sbjct: 197 YLDQMAEAEKRDHRKIGAEMKLFT-FREEVGAGFPIWLPAGARMRSRLEQLLFKAHRKRG 255

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +DLW  SG Y +YG+ M      ++      P +      ++   + SY
Sbjct: 256 YEPVRGPEMLRSDLWKVSGHYQNYGENM-YFTHIDELEFGVKPMNCVGHIKVYEHDLHSY 314

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  +++  +  R E+     G+ R REF   DA+ F  T +  +    ++     +I
Sbjct: 315 RDLPLKYFEYGVVHRHEMTGALHGLFRVREFTQDDAHIFC-TADQIEQQIIEVVDFVDKI 373

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                                       +  T   +        +    +  T  D    
Sbjct: 374 MKTFEFNYKM------------------MISTKPEKAVGDDAVWEISTNALKTAMDKNNL 415

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D++    +     ++      F  +Y+   +A  + 
Sbjct: 416 SYEIDEGGGAFYGPKIDI---KITDAIGREWQCGTIQLDFNLPARFELEYNGEENAKIQ- 471

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                  V +    +G+      ++   + G+  ++   +AP +++++ I    +     
Sbjct: 472 ------PVMIHRAILGSFERFVGILTEHYAGEFPMF---IAPTQVAIVPIAPTHE---AY 519

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++  +L  +G D    D  E +  +   A+    P+ +++G + V++  + ++ R + 
Sbjct: 520 ARELADKLIDMGADFEIFDKNESLNKRIRTAEKGRVPMIIVLGDEEVANKSIAVRDRRSR 579

Query: 425 IREDMSLEEVINYASHRFSN 444
            + ++S E+ I+    + + 
Sbjct: 580 EQYNLSEEDFISLVKQKINE 599


>gi|148654295|ref|YP_001274500.1| threonyl-tRNA synthetase [Roseiflexus sp. RS-1]
 gi|148566405|gb|ABQ88550.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Roseiflexus sp.
           RS-1]
          Length = 595

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 133/444 (29%), Gaps = 38/444 (8%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      +L L          G+  + P G+     + + +RE Q R G
Sbjct: 184 YLHRLEEAKRRDHRRIGKELGLFY-FSDDIGPGLPLFTPKGEMLRHLMESYVREVQTRYG 242

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +    +    L+ +SG Y++Y + M      D      +        MT      I 
Sbjct: 243 YQHVWTGHIVREALYKKSGHYEAYRENMFPPMVEDEEHIYRLKPMNCPSHMTLYKEMGIH 302

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +    +R E R    G+ R R     D + F   P+  +  +        
Sbjct: 303 SYRDLPLRFAEFATLYRYEDRGTLTGLTRVRALTQDDCHIFCR-PDQIEEEFGLALRLIR 361

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +          +R      GG                     +  D    +  T  D  
Sbjct: 362 EVLETYRFTDYRVRLSLRGAGGK---------------YITDDEAWDLAEHALRTALDHY 406

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y   +D       D L    ++S   ++       G          +
Sbjct: 407 GVEYEEAPGEAAIYGPKADFL---ARDVLGREWQLSTIQVDFIQPRRLG--------LEY 455

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG+     +      G+      V+   + G   +W   V         I   D+  
Sbjct: 456 IAEDGQPRTPVVLHRAVTGSTERFLGVLIEHYAGAFPLWLAPVQAI-----VIPISDERH 510

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++  +L+     V  D   +++ ++   A L   P  +I+G +      V ++ R
Sbjct: 511 SAYAAEVGRQLTAAQLRVEVDLSKDRMQAKIRQAQLQKIPYMLIIGDREQRAGAVAVRTR 570

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  MS+   I  A       
Sbjct: 571 SGEDLGAMSVAAFIERARAEIEAK 594


>gi|313793980|gb|EFS42004.1| prolyl-tRNA synthetase [Propionibacterium acnes HL110PA1]
 gi|313801367|gb|EFS42618.1| prolyl-tRNA synthetase [Propionibacterium acnes HL110PA2]
 gi|313839912|gb|EFS77626.1| prolyl-tRNA synthetase [Propionibacterium acnes HL086PA1]
 gi|314963668|gb|EFT07768.1| prolyl-tRNA synthetase [Propionibacterium acnes HL082PA1]
 gi|315079518|gb|EFT51511.1| prolyl-tRNA synthetase [Propionibacterium acnes HL053PA2]
 gi|327451998|gb|EGE98652.1| prolyl-tRNA synthetase [Propionibacterium acnes HL092PA1]
          Length = 581

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 106/271 (39%), Positives = 155/271 (57%), Gaps = 6/271 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRVAVPDP 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           + ++        P A   D  + +  +SL  
Sbjct: 241 LPID------GLPEAEVVDTPDARTIESLVR 265



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              DV   +  D  P+   +   ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 395 GVIDVAEIREGDPAPDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ 
Sbjct: 455 SYGLGVSRAVAAIAEGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 514 GLEVLLDDRKASPGVKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572

Query: 436 NYASHRFS 443
                   
Sbjct: 573 CAVLKEVR 580


>gi|318041155|ref|ZP_07973111.1| prolyl-tRNA synthetase [Synechococcus sp. CB0101]
          Length = 609

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 119/281 (42%), Positives = 160/281 (56%), Gaps = 11/281 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L+++P +AEI SHKL+LR G I +   GIY++LPL  + L  ++AI+REE
Sbjct: 1   MRVSRLMLVTLRDDPAEAEIPSHKLLLRAGYIRRVGSGIYAYLPLLWRVLQKISAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA+E  +P LQ A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  LNAAGALETLLPQLQPAELWQRSGRWAGYTAGEGIMFHLEDRQGRELGLGPTHEEVITAL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       K +Y  M
Sbjct: 121 AGDLLRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEACLKQTYAAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-------FCSKDFMDF 230
             +Y RIF R GL+++ + A+SG IGG  S EF+V AD GE  +       + +      
Sbjct: 181 DQAYRRIFSRCGLRAVAVEADSGAIGGSASQEFMVTADAGEDLILASGDGRYAANQERAV 240

Query: 231 PIPSENTDFDDIISLNSIVEQWTAP-YAATSDVHNEKLFDS 270
            +P+E              E  T P   A  D+ +   FD 
Sbjct: 241 SLPAEAVPLPGGARAAGAGEDLTTPGQTAIDDLCSAHGFDP 281



 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 104/196 (53%), Gaps = 4/196 (2%)

Query: 254 APYAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            P   + D+   +  D    +   +  ++RGIEVGHIF  G KYS  + ATF    G++ 
Sbjct: 409 CPAPESLDLRAAQPGDRCLHDASQQLEASRGIEVGHIFQLGRKYSAALEATFTNEAGQEE 468

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MG YGIG  R+  A +E  HD  GI WP ++APF++ ++     D   R+  E++YA
Sbjct: 469 PLWMGCYGIGVSRLAQAAVEQHHDANGICWPTAIAPFEVIVVIANVADAAQRELGEQLYA 528

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
                G DV  DD  E+ G +F  ADLLG P +V+VG +  +D KVE+  R  G R D++
Sbjct: 529 EFQVAGMDVLLDDRTERAGVKFKDADLLGIPWRVVVG-RGAADGKVELVQRAGGERSDLA 587

Query: 431 LEEVINYASHRFSNNR 446
             +V+     +    R
Sbjct: 588 AADVLAQLQGQLERER 603


>gi|298250750|ref|ZP_06974554.1| threonyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297548754|gb|EFH82621.1| threonyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 624

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 69/448 (15%), Positives = 152/448 (33%), Gaps = 41/448 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L          G+  + P G    D +   ++  Q   G
Sbjct: 203 YLWLLEESKKRDHRRLGQELDLFA-FSDLVGGGLPLFTPKGTLVRDLLEEFVQSLQEPLG 261

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              + +P +   DL+  SG ++ + +++  ++ ++ +     P +    T I+ S ++SY
Sbjct: 262 YQRVHIPHITKNDLYKTSGHWEKFQEDIFHVSGKSGEDFCMKPMNCPHHTQIYASRMRSY 321

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++   +RDEL      +     + +D      TP+  +    +++      +
Sbjct: 322 RELPIRLSEVTTVYRDELPGTLHGLSRVRAITQDDAHVFCTPDQVQEEVLRIYSIIENFY 381

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G+        +  +   L  E          +   + +  +                
Sbjct: 382 KPFGM--------TLAVRLSLWDEEH------PEKYLGTPELWNSAQEQLRAVLRMKGIE 427

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                   A Y    D       D+L    +++   ++    F    ++    +  + G 
Sbjct: 428 WVEEVGEAAFYGPKIDF---TALDALERTWQLATIQLD----FNLPERF----NLEYMGP 476

Query: 306 DGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG     V +    +G++    +V+   + G    W   ++P +  +I I        D 
Sbjct: 477 DGHAARPVMLHRAVLGSVERFMSVLIEHYAGAFPTW---LSPVQAMIIPIADRH---LDY 530

Query: 365 CEKIYARLSKVG-------CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             ++   L  V          V  D+  E +  +   A L   P  +++G K   + +V 
Sbjct: 531 AYQVKQSLLDVRLSSARESIRVEVDEARESMQKKIRNAQLQKVPYMLVLGDKEAENGEVN 590

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++HR       +S+  +           
Sbjct: 591 VRHRSGVNLGTLSVSALAERIKQEILTR 618


>gi|294628375|ref|ZP_06706935.1| threonyl-tRNA synthetase [Streptomyces sp. e14]
 gi|292831708|gb|EFF90057.1| threonyl-tRNA synthetase [Streptomyces sp. e14]
          Length = 659

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 65/448 (14%), Positives = 136/448 (30%), Gaps = 36/448 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L +    +   G+  + P G      +    R    
Sbjct: 246 LKQYLDFLAEAEKRDHRKLGAELDLFS-FPDELGPGLAVFHPKGGVVRKVMEDYSRRRHE 304

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
            +G   ++ P +    L+  SG    Y + M      +++       +  +   IF+S  
Sbjct: 305 VSGYEFVNTPHISKEHLFEISGHLPHYAEGMFPPIQFDEQNYRLKAMNCPMHNLIFKSRG 364

Query: 123 KSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP   ++    +R E      G+ RSR F   D++ +    +  +   + +    
Sbjct: 365 RSYRELPLRLFEFGTVYRYEKSGVVHGLTRSRGFTQDDSHIYCTKEQMPQEL-DTLLTFV 423

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L +    GL    +   +     D S +FI   +                  +     + 
Sbjct: 424 LDLLRDYGLTEFELELST----RDDSDKFIGSDE-----------DWAEATEALRQAAEK 468

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y       + ++ D++  + ++S   ++               +  
Sbjct: 469 QNLPLVPDPGGAAYYGPKI---SVQVRDAIGRSWQMSTIQVDFNQP--------KRFNLE 517

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  ADG       +     G++     V+   + G    W   V    I +         
Sbjct: 518 YTAADGSRRQPVMIHRALFGSIERFFGVLLEHYAGAFPAWLAPVQAVGIPVG------DA 571

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                EK        G  V  D   +++  +   A     P  +IVG   ++   V  ++
Sbjct: 572 HVGYLEKFALEAKSKGLRVEVDASSDRMQKKIRNAQKQKVPFMIIVGDDDMNAGTVSFRY 631

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPV 448
           R       +  ++ +            V
Sbjct: 632 RDGSQENGIPRDQALAKLVDVVERRAQV 659


>gi|195472319|ref|XP_002088448.1| Aats-thr [Drosophila yakuba]
 gi|194174549|gb|EDW88160.1| Aats-thr [Drosophila yakuba]
          Length = 747

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/432 (16%), Positives = 147/432 (34%), Gaps = 40/432 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + + + ++ E  + G  E+ 
Sbjct: 342 EEAAKRDHRKIGREQELF--FFHELSPGSCFFQPRGAHIYNTLMSFMKAEYRKRGFQEVI 399

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW+ SG +  Y + M       +      P +      IF +  +S+R LP 
Sbjct: 400 SPNIYNAKLWMTSGHWQHYAENMFSFEAEKET-FALKPMNCPGHCLIFDNRNRSWRELPL 458

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +               ++   G
Sbjct: 459 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTPEQIKSEM-KGCLEFLHHVYTIFG 517

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F ++  T         +  +    +     ++        
Sbjct: 518 FS------------------FQLVLSTRPDNYLGELEQWNAAEKALAESLNEFGMPWKEN 559

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    +++L   A       K 
Sbjct: 560 PGDGAFYGPKIDI---TIMDALKRAHQCATIQLD----FQLPIRFNLSYIA---DDGEKK 609

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +     WP  ++P ++ ++ +           + + 
Sbjct: 610 RPVIIHRAILGSVERMIAILT---ENFAGKWPFWLSPRQVMVVPVGP---AYDQYAQSVR 663

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R   +  +
Sbjct: 664 DQLHAAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGE 723

Query: 429 MSLEEVINYASH 440
           +S+ E+I     
Sbjct: 724 VSVAELITKLQK 735


>gi|170781142|ref|YP_001709474.1| threonyl-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155710|emb|CAQ00831.1| threonine-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 684

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 67/454 (14%), Positives = 132/454 (29%), Gaps = 47/454 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L +    +   G+  + P G      +    R      G   
Sbjct: 260 RIEEALKRDHRRLGAELDLFS-FPDEIGSGLAVFHPKGGIIRREMEDYSRRRHETAGYEF 318

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTD 116
           +  P +  ++L+  SG  D Y   M                 R        P +  +   
Sbjct: 319 VYSPHITKSNLFETSGHLDFYKDGMFPAMHLDEARNDEGEITRQGADYYLKPMNCPMHVL 378

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+RS  +SYR LP   ++    +R+E      G+ R R     DA+ F      +     
Sbjct: 379 IYRSRQRSYRELPLRLFEFGTVYRNEKSGVIHGLTRVRGMTQDDAHIFTTRERMADEL-K 437

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                 L +    GL    +   +                    +   S +  +    + 
Sbjct: 438 GTLEFVLSLLRDYGLDDFYLELST----------------KDPEKFVGSDEVWEEATETL 481

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                D            A Y       + +  D++    ++S   ++    F    ++ 
Sbjct: 482 RQVAVDTGLELVPDPAGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FNLPERFG 534

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
           L  +A       +   V +     G++     V+   + G   +W   V    I +    
Sbjct: 535 LEYTA---NDGTRKQPVMIHRALFGSIERFFGVLTEHYAGAFPVWLSPVQVVGIPVA--- 588

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   +    +  RL   G  V  D   +++  +         P Q+I G    +   
Sbjct: 589 ---EDYEEYLGGVLDRLRAEGVRVQLDTSDDRMPKKIRTHTKARVPYQLIAGEDDRAAGS 645

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           V  + R       + + E +   +   +    V+
Sbjct: 646 VSFRFRDGTQVNGVPVAEAVERITGAIARREQVV 679


>gi|194206357|ref|XP_001491149.2| PREDICTED: similar to threonyl-tRNA synthetase-like 2 [Equus
           caballus]
          Length = 754

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 152/447 (34%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 337 KMMKNWEKFQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLMDFIREE 394

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y + M    D         P +      +F  
Sbjct: 395 YHQRNFTEVLSPNMYNSKLWEASGHWQHYSENMFTF-DIEKDTFALKPMNCPGHCLMFAH 453

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 454 RPRSWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLQ 512

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T            D          
Sbjct: 513 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEIGLWDEAEKQLQNSL 554

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 555 MEFGKPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 607

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K + V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 608 SK--DGDDKKNPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP--- 659

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C     ++     + G     D D    +  +   A L  +   ++VG K  +++ V +
Sbjct: 660 TCEKYALQVSNEFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKTNNAVNV 719

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   I  ++S+   I+   H   + 
Sbjct: 720 RTRDNKIHGEISVTSAIDKLKHLKKSR 746


>gi|150015183|ref|YP_001307437.1| threonyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|149901648|gb|ABR32481.1| threonyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 643

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 153/444 (34%), Gaps = 36/444 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL  L+E   RD      +L L T       +G+   +P G K +  +   + +E+ + G
Sbjct: 229 FLEALEEAKKRDHNKLGRELKLFTT-DENVGQGLPLLMPKGAKIVQLLQRWVEDEEEKRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            +    P +  +DL+  SG +D Y   M      +++D+     P        I+ +   
Sbjct: 288 YLLTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDDEVFALRPMTCPFQYTIYNAEQH 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +    FR+E      G++R R+F         +TPE  +  +  +     
Sbjct: 348 SYRDLPLRYGETSTLFRNEASGEMHGLIRVRQFT-LADGHLVVTPEQLEEEFKGVLELIQ 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +   LG            I   +++ F         +     D  +    +     D +
Sbjct: 407 YLMGTLG------------IAEKITYRFSKWDPNNTEKYINDPDAWNKTQDTMRNILDHL 454

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  +   A Y    D+    +     +   +    I+           +     ++
Sbjct: 455 NINYVEADDEAAFYGPKLDLQFRNVH---GKEDTLFTVQIDFAL--------AERFDMSY 503

Query: 303 KGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG+      +    IG      A++    +     +P  ++P +  ++ I       
Sbjct: 504 VDKDGEKKRPYIIHRSSIGCYERTLAMLI---EEYAGAFPTWLSPVQAKVLPISDK---Y 557

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  E +   L   G  V  D   E+IG +   A L   P  ++VG K  ++++V ++ R
Sbjct: 558 NDYAEAVTKALKNKGIRVETDYRAEKIGYKIREARLERTPYILVVGEKEAANNEVSVRSR 617

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + L+  I        N 
Sbjct: 618 KNDDEGAVKLDAFIERIVKEIENK 641


>gi|24657723|gb|AAH39225.1| Threonyl-tRNA synthetase-like 2 [Mus musculus]
          Length = 790

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 155/448 (34%), Gaps = 42/448 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +  I +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 373 KMMKDWEKIQEEAKSRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNALMDFIREE 430

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y   M    D         P +      +F  
Sbjct: 431 YHKRNFTEVLSPNMYNSKLWETSGHWQHYSNNMFTF-DVEKDTFALKPMNCPGHCLMFAH 489

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F +  +  +        
Sbjct: 490 RPRSWREMPVRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCMVEQ-IEEEIKGCLH 548

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 549 FLQSVYSTFGFSFQLN-LSTRPEHFLGEIE-----------------IWDEAERQLQNSL 590

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      I     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 591 VEFGKPWKINPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 643

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K+  V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 644 SK--DGDDKNRPVIIHRAILGSVERMIAILS---ENYGGKWPLWLSPRQVMVIPVGP--- 695

Query: 360 VCRDACEKIYARLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            C +   ++     + G   DV  DD    +  +   A L  +   ++VG K   ++ V 
Sbjct: 696 ACENYALQVSKECFEEGFMADVDLDDS-CTLNKKIRNAQLAQYNFILVVGEKEKINNAVN 754

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R   I  ++S+  VI    +   + 
Sbjct: 755 VRTRDNKIHGEISIASVIEKLKNLKKSR 782


>gi|186685902|ref|YP_001869098.1| threonyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
 gi|186468354|gb|ACC84155.1| threonyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
          Length = 611

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 156/441 (35%), Gaps = 39/441 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 199 EEALRRDHRKLGKELGLFI-FSDLVGPGLPLWTPKGTLLRSTLEDFLKQEQVKRGYLSVV 257

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  L   +++A       +  P +      I++S ++S
Sbjct: 258 TPHIARVDLFKTSGHWQKYKEDMFPLMADDEEAAAQEQGFVMKPMNCPFHIQIYKSELRS 317

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    +    +R E     G +        D     +TPE     +  +    L +
Sbjct: 318 YRELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPEQLDSEFLSVVDLILSV 377

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F++L LK+   R                  D    +   S +  D    +     + +  
Sbjct: 378 FNKLQLKNFKARLS--------------FRDPASDKYIGSDEVWDKAEGAIRRAVETLGM 423

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +       A Y    D       D+L    ++    ++                  +  
Sbjct: 424 EHFEGIGEAAFYGPKLDFI---FSDALDREWQLGTVQVDYNLP--------ERFELEYVA 472

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG +   V +     G++  +  ++    +     +P  +AP +  L+ +        D
Sbjct: 473 EDGVRKRPVMIHRAPFGSLERLIGILI---EEYAGDFPLWLAPVQARLLPVG---DTQLD 526

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + + A++  +G     D  G+++G Q   A+    P+  +VG+K V  + + I+ R +
Sbjct: 527 FAKDVVAKMRALGIRAEVDTSGDRLGKQIRNAEKEKIPVMAVVGAKEVETNTLSIRTRAS 586

Query: 424 GIREDMSLEEVINYASHRFSN 444
           G    + ++EV++      + 
Sbjct: 587 GELGVIPVDEVVDKMKDAIAK 607


>gi|71021529|ref|XP_760995.1| hypothetical protein UM04848.1 [Ustilago maydis 521]
 gi|46100879|gb|EAK86112.1| hypothetical protein UM04848.1 [Ustilago maydis 521]
          Length = 759

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 78/452 (17%), Positives = 154/452 (34%), Gaps = 43/452 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+Y   +L+   RD      +  L   M H+ S G   WLP G +  + +   ++ E  
Sbjct: 337 MSEYKQFLLEAAKRDHRKIGKEQELF--MFHELSPGSCFWLPHGARIYNTLQEFLKSEYR 394

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW  SG + +Y  +M  +   + +     P +      +F S  
Sbjct: 395 QRGFDEVVTPNMYNSKLWQTSGHWQNYKDDMF-VLGVDKEQFALKPMNCPGHCLMFASRD 453

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP       +  R+E      G+ R R F   DA+ F ++ +  +      F   
Sbjct: 454 RSYKELPLRLADFGVIHRNEASGALSGLTRVRRFCQDDAHIFCMSSQIEQEM-AGCFDFL 512

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            R++   G                   EF +   T   +     +  +          D 
Sbjct: 513 ERVYGLFG------------------FEFKLELSTRPEKFLGDIETWNAAEARLGAALDK 554

Query: 242 II-SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     +     A Y    D+    + D++  + + +   ++    F    ++ L    
Sbjct: 555 FVPGKWELNPGDGAFYGPKIDI---TISDAMRRHFQCATIQLD----FQLPQQFKLEYRT 607

Query: 301 TFK--GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G    +  V +    +G++    A++     GK   W        + + N     
Sbjct: 608 AVSQGGETQAERPVMIHRAVVGSLERFIAILTEHFAGKWPFWLSPRQLLVVPVTN----- 662

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  + +  RL   G     D     +  +    ++  +    +VG + +  + V I
Sbjct: 663 -TVFDYAKSVQQRLWDQGFFADVDLSDNTLPKKIRNGEIAQYNFVFVVGHEEMQTNSVNI 721

Query: 419 KHRLT----GIREDMSLEEVINYASHRFSNNR 446
           ++R      G  E M L++ I       S  R
Sbjct: 722 RNRDDVNQKGKAETMDLDKTITLLKALKSQRR 753


>gi|312139482|ref|YP_004006818.1| threonine-tRNA ligase thrs [Rhodococcus equi 103S]
 gi|311888821|emb|CBH48133.1| threonine-tRNA ligase ThrS [Rhodococcus equi 103S]
          Length = 683

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 58/441 (13%), Positives = 123/441 (27%), Gaps = 49/441 (11%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R+     G   +  
Sbjct: 257 EAERRDHRKLGAELDLFS-FPDELGSGLPVFHPKGGIIRQEMENYSRKRHVEEGYEFVYS 315

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDIFR 119
           P +    L+  SG  D Y   M                 +  +     P +  +   +F 
Sbjct: 316 PHITKGHLYEVSGHLDWYKDGMFPAMHIDEELNEDGTVRKPGQDYYLKPMNCPMHNLVFG 375

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP   ++    +R E      G+ R R     DA+ +    +          
Sbjct: 376 SRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYCTKEQMRDEL-TTTL 434

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    GL    +   +                    +        +    +    
Sbjct: 435 KFVLGLLKDYGLDDFYLELST----------------KNPDKFVGDDALWEEATETLREV 478

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +             A Y       + ++ D+L  + ++S   ++    F    ++    
Sbjct: 479 GEASGLNLVPDPGGAAFYGPKI---SVQVQDALGRSWQMSTIQLD----FNLPERFD--- 528

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + G+DG       +     G++     V+   + G    W   V    I +      
Sbjct: 529 -LEYTGSDGTKQRPVMIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPVA----- 582

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D    +  +L   G     D   +++  +         P  ++ G + V    V 
Sbjct: 583 -EAFEDHLFDVVKQLKAAGVRAEVDVSDDRMQKKIRNHTTQKVPFMLLAGERDVEAGAVS 641

Query: 418 IKHRLTGIREDMSLEEVINYA 438
            + R       + + + +   
Sbjct: 642 FRFRDGTQVNGVPVADAVETI 662


>gi|314923910|gb|EFS87741.1| prolyl-tRNA synthetase [Propionibacterium acnes HL001PA1]
 gi|314966030|gb|EFT10129.1| prolyl-tRNA synthetase [Propionibacterium acnes HL082PA2]
 gi|314981915|gb|EFT26008.1| prolyl-tRNA synthetase [Propionibacterium acnes HL110PA3]
 gi|315090730|gb|EFT62706.1| prolyl-tRNA synthetase [Propionibacterium acnes HL110PA4]
 gi|315094978|gb|EFT66954.1| prolyl-tRNA synthetase [Propionibacterium acnes HL060PA1]
 gi|315104203|gb|EFT76179.1| prolyl-tRNA synthetase [Propionibacterium acnes HL050PA2]
 gi|327328087|gb|EGE69856.1| proline--tRNA ligase [Propionibacterium acnes HL103PA1]
          Length = 581

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 106/271 (39%), Positives = 155/271 (57%), Gaps = 6/271 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  NIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           + ++        P A   D  + +  +SL  
Sbjct: 241 LPID------GLPEAEVVDTPDARTIESLVR 265



 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              DV   +  D  P+   +   ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 395 GVIDVAEIREGDLAPDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ 
Sbjct: 455 SYGLGVSRAVAAIAEGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 514 GLEVLLDDRKASPGVKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572

Query: 436 NYASHRFS 443
                   
Sbjct: 573 CAVLKEVR 580


>gi|195147146|ref|XP_002014541.1| GL19239 [Drosophila persimilis]
 gi|198473694|ref|XP_001356405.2| GA18821 [Drosophila pseudoobscura pseudoobscura]
 gi|194106494|gb|EDW28537.1| GL19239 [Drosophila persimilis]
 gi|198138068|gb|EAL33469.2| GA18821 [Drosophila pseudoobscura pseudoobscura]
          Length = 754

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 73/432 (16%), Positives = 148/432 (34%), Gaps = 40/432 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   I+ E  + G  E+ 
Sbjct: 349 EEAAKRDHRKIGREQELF--FFHELSPGSCFFQPRGAHIYNTLMGFIKSEYRKRGFQEVI 406

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW+ SG +  Y + M       +K     P +      IF +  +S+R LP 
Sbjct: 407 SPNIYNAKLWMTSGHWQHYAENMFSFEAEKEK-FALKPMNCPGHCLIFDTRNRSWRELPL 465

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +               ++   G
Sbjct: 466 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAPEQIKSEM-KGCLEFLKHVYTIFG 524

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F ++  T   +     +  +    +     ++        
Sbjct: 525 FT------------------FQLVLSTRPEKYLGELEQWNDAEKALEESLNEFGMPWKEN 566

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    +++L   A       K 
Sbjct: 567 PGDGAFYGPKIDI---TIMDALKRAHQCATIQLD----FQLPIRFNLNYIA---DDGEKK 616

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +     WP  ++P ++ ++ +           + + 
Sbjct: 617 RPVIIHRAILGSVERMIAILT---ENYAGKWPFWLSPRQVMVVPVGP---AYDQYAQTVK 670

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R   +  +
Sbjct: 671 DQLHAAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGE 730

Query: 429 MSLEEVINYASH 440
           +S+ E+I     
Sbjct: 731 VSVSELITKLQK 742


>gi|269795644|ref|YP_003315099.1| prolyl-tRNA synthetase, family II [Sanguibacter keddieii DSM 10542]
 gi|269097829|gb|ACZ22265.1| prolyl-tRNA synthetase, family II [Sanguibacter keddieii DSM 10542]
          Length = 591

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 99/239 (41%), Positives = 141/239 (58%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASH+L++R G I + + GIY+WLPLG + L  V A++REE 
Sbjct: 4   RLSTLFVRTLREDPADAEVASHRLLVRAGYIRRAAPGIYTWLPLGLRVLAKVEAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+  P L   + +  +GR+  YG  + RL DR D   +  PTHEE+ T + +  
Sbjct: 64  QAAGAQEVHFPALLPREPYEATGRWTEYGPNLFRLKDRRDNDYLLAPTHEEMFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T +Q+Q K+RDE RPR G++R REF+MKDAYSFD+   G + SY     +Y
Sbjct: 124 YSSYKDLPVTLFQVQTKYRDEARPRAGLIRGREFVMKDAYSFDVDDAGLEASYLVQRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            +IF RLGL+ + + A SG +GG  S EF+     GE     S       + +  T   
Sbjct: 184 EKIFTRLGLEYVVVAATSGAMGGSRSEEFLHPTAIGEDTFVRSPGGYAANVEAVTTIVP 242



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 82/202 (40%), Gaps = 31/202 (15%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+       ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 403 GTVECAEVRAGDPAPDGSGPLELARGIEIGHIFQLGRKYADALGLKVLDVNGKQVTVTMG 462

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R +AA+ E++HD KG+ WP  VAP  + ++     D     A E I   LS  
Sbjct: 463 SYGIGVTRALAALAEANHDEKGLAWPAHVAPAHVHVVATG-KDPAVFAAAETIAQELSAQ 521

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKF-------------VSDSKVEIKHR 421
             +V +DD      G +FA A                            ++D  VE++ R
Sbjct: 522 RVEVLYDDRPKVSPGVKFADA--------------ELLGVPLVVVVGRGLADGVVEVRPR 567

Query: 422 LTGIREDMSLEEVINYASHRFS 443
           + G    + + E          
Sbjct: 568 VGGEAVSVPVAEAAQRVVEMVE 589


>gi|302554518|ref|ZP_07306860.1| prolyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302472136|gb|EFL35229.1| prolyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 566

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 102/239 (42%), Positives = 144/239 (60%), Gaps = 1/239 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + GI+SWLPLG+K L NV  I+REE 
Sbjct: 8   RMSQLLAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGIWSWLPLGKKVLANVERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P +   + +  +GR++ YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAVGAQEVLLPAILPREPYEATGRWEEYGPELFRLQDRKGGDYLLGPTHEEIFTLLVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REFLMKD+YSFD   EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQNKYRDEARPRAGILRGREFLMKDSYSFDTDDEGLAQSYALHREAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            +IF RLGL      A +G +GG  S EF+  A+ GE   F      DF   +E   ++
Sbjct: 188 QKIFARLGLDYRICAATAGAMGGSKSEEFLAPAEAGE-DTFADCPNCDFAANTEAITYE 245



 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 92/177 (51%), Gaps = 6/177 (3%)

Query: 266 KLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           +  D  P+     V  R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R
Sbjct: 392 QEGDPCPKCGTGLVLDRAIEIGHIFQLGRKYADALKLDVLGQNGKPVRVTMGSYGIGVSR 451

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            VAA+ E S D KG+ WP  VAP  +    + A   +  +    I  +L+  G  V  DD
Sbjct: 452 AVAALAEQSADDKGLCWPKEVAPADVH--VVAAGKALQTELALDISGKLAAAGVRVLVDD 509

Query: 384 M-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             G   G +F  ++L+G P  ++ G +  +D  VE+K R TG RE++++EE +   +
Sbjct: 510 RAGVSPGVKFTDSELIGVPQILVAGRR-AADGVVELKDRRTGEREELTVEEAVARLT 565


>gi|300741607|ref|ZP_07071628.1| threonine--tRNA ligase [Rothia dentocariosa M567]
 gi|300380792|gb|EFJ77354.1| threonine--tRNA ligase [Rothia dentocariosa M567]
          Length = 677

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/443 (15%), Positives = 141/443 (31%), Gaps = 32/443 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L +        G+    P G      +   +R      
Sbjct: 253 EYKHRIAEAERRDHRRLGKELDLFS-FPKNIGPGLPVIHPKGGVIKREMEDYVRARHIAE 311

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +S P +   DL+  SG    Y   M    + ++        +  +  +I+RS  +S
Sbjct: 312 GFQYVSTPHISKEDLFYTSGHLPYYADGMFPAMELDNGNYRLKAMNCPMHNEIYRSRGRS 371

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  F++    +RDE      G+ R R     D++S+    +        +    L 
Sbjct: 372 YRELPLRFFEFGTVYRDEKSGVLQGLTRVRMITQDDSHSYVTKEQAPDE-VRHLLNFMLS 430

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G+    +   +    GD   +FI   +             +           +  
Sbjct: 431 LLEDFGMTDFYLELSTRDTEGDKKDKFIGTDEQ-----------WEQATAVLEQVAKETG 479

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y       + +  D++    ++S    +      FG          ++
Sbjct: 480 LELVPDPGGAAFYGPKI---SVQAKDAIGRTWQMSTVQYDFNQPSRFG--------LEYQ 528

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            ADG       + S   G++     V+    +     +P  ++P ++  + +    +   
Sbjct: 529 AADGSIQEPVMIHSAKFGSIERFLGVLT---EHYAGAFPAWLSPVQVICVPVA---EAFN 582

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +I  +L + G  V  D   ++   +   A     P  +I G +      V  + R 
Sbjct: 583 DYMTEIADKLREQGVRVEVDYGSDRFTKKIRTASTEKVPFILIAGGEDAEAGAVSFRFRG 642

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 + ++E +    +   N 
Sbjct: 643 NKQENGVPVDEAVVRIVNHIRNR 665


>gi|148273002|ref|YP_001222563.1| threonyl-tRNA synthetase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830932|emb|CAN01876.1| thrS [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 684

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 67/454 (14%), Positives = 132/454 (29%), Gaps = 47/454 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L +    +   G+  + P G      +    R      G   
Sbjct: 260 RIEEALKRDHRRLGAELDLFS-FPDEIGSGLAVFHPKGGIIRREMEDYSRRRHETAGYEF 318

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTD 116
           +  P +  ++L+  SG  D Y   M                 R        P +  +   
Sbjct: 319 VYSPHITKSNLFETSGHLDFYKDGMFPAMHLDEARNDEGEITRQGADYYLKPMNCPMHVL 378

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I+RS  +SYR LP   ++    +R+E      G+ R R     DA+ F      +     
Sbjct: 379 IYRSRQRSYRELPLRLFEFGTVYRNEKSGVIHGLTRVRGMTQDDAHIFTTRERMADEL-K 437

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                 L +    GL    +   +                    +   S +  +    + 
Sbjct: 438 GTLEFVLSLLRDYGLDDFYLELST----------------KDPEKFVGSDEVWEEATETL 481

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                D            A Y       + +  D++    ++S   ++    F    ++ 
Sbjct: 482 RQVAVDTGLELVPDPAGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FNLPERFG 534

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
           L  +A       +   V +     G++     V+   + G   +W   V    I +    
Sbjct: 535 LEYTA---NDGTRKQPVMIHRALFGSIERFFGVLTEHYAGAFPVWLSPVQVVGIPVA--- 588

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   +    +  RL   G  V  D   +++  +         P Q+I G    +   
Sbjct: 589 ---EDYEEYLGGVLDRLRAEGVRVQLDTSDDRMPKKIRTHTKARVPYQLIAGEDDRAAGS 645

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           V  + R       + + E +   +   +    V+
Sbjct: 646 VSFRFRDGTQVNGVPVAEAVERITGAIARREQVV 679


>gi|47575750|ref|NP_001001219.1| threonyl-tRNA synthetase [Xenopus (Silurana) tropicalis]
 gi|301626626|ref|XP_002942489.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Xenopus
           (Silurana) tropicalis]
 gi|45709710|gb|AAH67949.1| threonyl-tRNA synthetase-like 2 [Xenopus (Silurana) tropicalis]
          Length = 721

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 156/449 (34%), Gaps = 44/449 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD      +  L     H+ S G   +LP G    + + A IR+E
Sbjct: 304 KMLKEWEKFQEEAKNRDHRKIGREQELF--FFHELSPGSCFFLPKGAYIYNQLIAFIRQE 361

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW  SG +  Y + M       +      P +      +F  
Sbjct: 362 YRKRGFQEVVTPNVYNSKLWQTSGHWQHYSENMFSFEVEKEI-FALKPMNCPGHCLMFDH 420

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 421 RPRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQ-IEEEIKSCLD 479

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +++  G         + P       E    A+                        
Sbjct: 480 FLRAVYNVFGFTFKLN-LSTRPEKFLGDIEVWNQAEK-----------------QLENSL 521

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 522 NEFGEKWVLNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 570

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 571 LTYVSHDGDDKKRPVIIHRAILGSVERMIAILT---ENFGGKWPLWLSPQQVMVVPVGP- 626

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +++  +  + G     D D G  +  +   A L  +   +++G K  +   V
Sbjct: 627 --TCDEYAQQVREQFHRAGLMTDVDLDPGCTLNKKIRNAQLAQYNFILVIGEKEKASGTV 684

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I+ R   +  + ++ E I        + 
Sbjct: 685 NIRTRDNKVHGERTIAETIERLLQLKDSR 713


>gi|157165430|ref|YP_001465955.1| threonyl-tRNA synthetase [Campylobacter concisus 13826]
 gi|171855003|sp|A7ZAZ7|SYT_CAMC1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|112801821|gb|EAT99165.1| threonyl-tRNA synthetase [Campylobacter concisus 13826]
          Length = 606

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 149/437 (34%), Gaps = 40/437 (9%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      ++ L T    +   G+  WLP G +    +  ++ +     G   +
Sbjct: 205 IEEAKKRDHRKLGVEMKLFT-FDEEVGGGLPIWLPNGGRLRSKLEQLLYKAHRDRGYEPV 263

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P L  AD+W  SG Y +Y + M      ++      P +      +++S I+SYR+LP
Sbjct: 264 RGPELLKADVWRRSGHYANYKENM-YFTTIDETEYGIKPMNCVGHIKVYQSDIRSYRDLP 322

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F++  +  R E      G+ R REF   D++ F + P   K +  ++      I    
Sbjct: 323 LKFFEYGVVHRHEKSGVLHGLFRVREFAQDDSHIFCM-PSQIKENILEILKFAGTIMENF 381

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G                          T   +     +  D    +     D+      I
Sbjct: 382 GFHYEMEI------------------STKPAKAIGGDEIWDTATKALKEALDENGFKYGI 423

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    D+   K+ D+L    +     ++    F    ++       +  A+ +
Sbjct: 424 DEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPERFD----LGYIDANNE 472

Query: 309 DHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 +    +G+      ++            +       + + I        D  ++
Sbjct: 473 RQRPVMLHRALLGSFERFIGILLEHT------AGELPFFIAPTQVVIVPISDAHLDYAKE 526

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I   L K+  D       E +  +   A+    P+ V++G   V++  V ++ R    + 
Sbjct: 527 ISRELRKINVDSEIASKNESLNKRIRTAEKQRVPMIVVLGDNEVANKSVALRDRQARTQS 586

Query: 428 DMSLEEVINYASHRFSN 444
           DMSL E +N    + S 
Sbjct: 587 DMSLAEFVNLTKEKLSE 603


>gi|163760291|ref|ZP_02167374.1| threonyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
 gi|162282690|gb|EDQ32978.1| threonyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
          Length = 668

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 149/449 (33%), Gaps = 46/449 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      ++ L      +   G+  W   G K   N+ A +R       
Sbjct: 234 YLHMLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHSKGWKMFQNLLAYMRRRLEN-D 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEML-----------RLADRNDKAMIYGPTHEEVM 114
             E++ P +    LW  SG +  Y + M               + +++     P +    
Sbjct: 291 YEEVNAPQILDKSLWETSGHWGWYQENMFAVKSAHAFTNPDDEEADNRIFALKPMNCPGH 350

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHS 173
             IF+  +KSYR+LP    +     R E      G+MR R F   DA+ F    +     
Sbjct: 351 VQIFKHGLKSYRDLPVRLAEFGNVHRYEPSGALHGLMRVRAFTQDDAHVFCTEEQLEAEC 410

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                   + ++   G + + ++  + P     +      A+    +V          + 
Sbjct: 411 LKIN-DLMMSVYSDFGFEEVVVKLATRPEKRVGTDAMWDHAEDILRKVL-------DKMA 462

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           +E+     +     I E     Y    +     L D++  + +     ++      FG  
Sbjct: 463 AESGGRIKVG----INEGEGTFYGPKFEY---TLRDAIGRDWQCGTTQVDFNLPERFG-- 513

Query: 294 YSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
                 A + G    K   V +     G++     ++  SH G   +W   +     ++ 
Sbjct: 514 ------AFYIGADSEKKQPVMVHRAICGSLERFLGILIESHAGHMPLWFAPLQVVVATIT 567

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                     D    +  RL   G  V  D   E+I  +     +   P+ ++ G +   
Sbjct: 568 ------SEADDYGAAVAQRLRDAGLQVETDFRNEKINYKVREHSVAKVPVILVCGMREAE 621

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  V ++   +  +  MSL + I   +  
Sbjct: 622 EQTVNVRRLGSRDQVSMSLADAIAKLAEE 650


>gi|21672408|ref|NP_660475.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|22654285|sp|P46244|SYT_BUCAP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21623017|gb|AAM67686.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 642

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 74/434 (17%), Positives = 133/434 (30%), Gaps = 40/434 (9%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
             RD       L L    + + S G+  W   G    + +   +RE+       E+  P 
Sbjct: 240 KKRDHRKIGKLLNLY--HMQKESPGMIFWHNNGWIIFNELEIFVREKLKEYKYKEVKTPL 297

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L    +W +SG +D+Y   +       ++     P +      IF   +KSYR+LP    
Sbjct: 298 LIDKSIWQKSGHWDNYQDAIFT-TSSENREYCIKPMNCPGHVQIFNCGLKSYRDLPIRMA 356

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR R F   DA+ F    +      N        ++     K 
Sbjct: 357 EFGSCHRNESSGSLHGLMRIRNFTQDDAHIFCTQEQLRYE-INNCIKMIYDLYSTFNFKK 415

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           I ++  + P            A+   + V                   +        E  
Sbjct: 416 ILVKFSTRPKKRIGDESVWDQAEKDLSDVLI-----------------ENNLKFEHQEGE 458

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HY 311
            A Y    +     L DSL  N +     ++    FY   +        +          
Sbjct: 459 GAFYGPKIEF---VLQDSLDRNWQCGTIQLD----FYLPIRLRSF----YIDEHNHQKIP 507

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + +    +G++     ++     GK   W           + I +      +  +KI   
Sbjct: 508 IIIHRAILGSIERFIGILIEEFSGKLPTW------LSPIQVVILSITDSHINYVKKIVQH 561

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            S +   V  D   E+IG +     L   P  +I G K +   K+ ++ R       + +
Sbjct: 562 FSDINIRVESDLRNEKIGFKIREHTLRQIPYILICGEKEIKSKKISVRTRNGYNLGIIDI 621

Query: 432 EEVINYASHRFSNN 445
           +  I          
Sbjct: 622 DCFIKKLQKEIFTR 635


>gi|54026044|ref|YP_120286.1| prolyl-tRNA synthetase [Nocardia farcinica IFM 10152]
 gi|81822939|sp|Q5YSB9|SYP_NOCFA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|54017552|dbj|BAD58922.1| putative prolyl-tRNA synthetase [Nocardia farcinica IFM 10152]
          Length = 585

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 128/436 (29%), Positives = 187/436 (42%), Gaps = 48/436 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ SHKL++R G + + + G+YSWLPLG + L  V  ++R E 
Sbjct: 4   RLSHLFLRTLRDDPADAEVPSHKLLVRAGYVRRVAPGVYSWLPLGLRVLRKVEDVVRAEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+S+P L   D +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  NAIGGQEISLPALLPRDPYETTNRWTEYGDSLFRLHDRKGADYLLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKD+YSFDL  +G K SYN    +Y
Sbjct: 124 YNSYKDLPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDLDEDGLKASYNAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFD 240
            RIF RLG+K + + A SG +GG  S EF+  +  GE   V C +      + +  T   
Sbjct: 184 QRIFDRLGVKYVIVAATSGAMGGSASEEFLADSPVGEDTYVICRESGYAANVEAVVTPAP 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   +         P A   D  +     SL E           G    FG   +   + 
Sbjct: 244 EPQPIEGR------PAAVVHDTPDTPTIASLVE------WANAAGIAEQFGRPVTAADTL 291

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                  +    +    GIG             D +        +     +  +   D  
Sbjct: 292 KNVMVKLRHPDGKTEIVGIGVP----------GDREVDDKRLGASVEPAEVELLTDADFA 341

Query: 361 CRDACEKIY---ARLSKVGCDVFWDDM----------GEQIGSQFAVADLLGFPLQVIVG 407
                 K Y     L + G     D             +  G       ++G    +I G
Sbjct: 342 ANPFLVKGYIGPKALQENGIRYLVDPRVGTGTAWITGADSPGK-----HVVG----LIAG 392

Query: 408 SKFVSDSKV---EIKH 420
             F  D  +   E++ 
Sbjct: 393 RDFTPDGTIEAAEVRD 408



 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 95/173 (54%), Gaps = 4/173 (2%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+ +    +ARGIE+GHIF  G KY+        G +GK   + MG
Sbjct: 399 GTIEAAEVRDGDPSPDGRGTLEAARGIEIGHIFQLGYKYTDAFEVDVLGENGKPVRLIMG 458

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA + E  HD KG+ WP +VAPF + ++     D+  R   E++ A L   
Sbjct: 459 SYGIGVSRMVAVIAEQQHDEKGLRWPAAVAPFDVHVVVAN-KDEAARTGAEQVVAGLDAQ 517

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           G DV +DD     G +F  A+LLG P  V++G +  +D  VE+++R TG  E+
Sbjct: 518 GLDVLFDDRTASPGVKFKDAELLGMPWVVVIG-RGWADGTVELRNRFTGEAEN 569


>gi|327446413|gb|EGE93067.1| prolyl-tRNA synthetase [Propionibacterium acnes HL013PA2]
          Length = 581

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 106/271 (39%), Positives = 156/271 (57%), Gaps = 6/271 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A +GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAASGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           + ++        P A   D  + +  +SL  
Sbjct: 241 LPID------GLPEAEVVDTPDARTIESLVR 265



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              DV   +  D  P+   +   ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 395 GVIDVAEIREGDPAPDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ 
Sbjct: 455 SYGLGVSRAVAAIAEGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 514 GLEVLLDDRKASPGVKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572

Query: 436 NYASHRFS 443
                   
Sbjct: 573 CAVLKEVR 580


>gi|297191728|ref|ZP_06909126.1| prolyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151037|gb|EDY65325.2| prolyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 691

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 106/263 (40%), Positives = 154/263 (58%), Gaps = 4/263 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + +++ GI+SWLPLG++ L+NV  ++REE 
Sbjct: 133 RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRNAAGIWSWLPLGKRVLENVTRVVREEM 192

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR++ YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 193 DAIGAQEVLLPALLPKEPYEATGRWEEYGAELFRLKDRKGADYLLGPTHEEIFTQLVKDQ 252

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF MKD+YSFD + EG   SY     +Y
Sbjct: 253 CTSYKDLPVILYQIQTKYRDEARPRSGILRGREFQMKDSYSFDTSDEGLAESYALHREAY 312

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
           +RIF RLGLK   + A SG +GG  S EF+  A  GE          D+   +E   F  
Sbjct: 313 VRIFERLGLKHKIVSAVSGAMGGSASEEFLAPAPAGEDTFVYCPSC-DYAANTEAVTFAL 371

Query: 240 -DDIISLNSIVEQWTAPYAATSD 261
                + +  VE+   P   T +
Sbjct: 372 APVEGAEHGPVEELDTPDTPTIE 394



 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 6/174 (3%)

Query: 269 DSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P         R IE+GHIF  G KY+        G +GK   V MGSYG+G  R VA
Sbjct: 520 DPCPSCGTGLKLDRAIEIGHIFQLGRKYADAFQLDVLGQNGKPVRVTMGSYGVGVSRAVA 579

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-G 385
           A+ E + D +G+ WP  +AP  +    + A   +  +    +  +L   G  V  DD  G
Sbjct: 580 ALAEQTADEQGLCWPREIAPADVH--VVAAGKALQTELALDVAEQLGAAGLRVLVDDRAG 637

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              G +F  A+L+G P  ++ G +      +E+K R TG RE++++ + +    
Sbjct: 638 VSPGVKFTDAELIGVPKILVAGRRSAE-GVLELKDRRTGEREELTVADAVARLR 690


>gi|297156817|gb|ADI06529.1| prolyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1]
          Length = 566

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 112/272 (41%), Positives = 152/272 (55%), Gaps = 4/272 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  L  L+E+P DAE ASHKL++R G + + S GI++WLP+G+K L+NV  I+REE 
Sbjct: 6   RMSRLMLKTLREDPADAETASHKLLVRAGYVRRTSAGIWTWLPIGKKVLENVARIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + R+ DR     + GPTHEE+ T   +  
Sbjct: 66  DAIGAQEVLLPALLPREPYEASGRWEEYGDLLFRIKDRKGADYLLGPTHEEIFTQTVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG   SY     +Y
Sbjct: 126 CTSYKDLPVILYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTTDEGLAESYRLHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
            RIF RLGL    + A SG +GG  S EF+  A  GE       +  D+   +E      
Sbjct: 186 QRIFERLGLDYRIVSAISGAMGGSASEEFLAPAAAGEDTFVDCPNC-DYAANTEAVTLAL 244

Query: 240 -DDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                + +  VE+   P   T D   E L   
Sbjct: 245 TPVEGAEHGPVEELDTPDTPTIDTLAEHLNIP 276



 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/182 (34%), Positives = 91/182 (50%), Gaps = 6/182 (3%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           DV   +  D  P         R IE+GHIF  G KY+        G +GK   V MGSYG
Sbjct: 387 DVVVVRPGDPCPRCGAGIELDRAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYG 446

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R VAA+ E +HD  G+ WP  VAP  +    + A   +  +   ++  +L   G  
Sbjct: 447 IGVSRAVAALAEQTHDESGLCWPREVAPADVH--IVAAGKALQTELALELADKLGTAGVR 504

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V  DD  G   G +F  A+L+G P  ++VG +   D  VE+K R TG RE++ ++E ++ 
Sbjct: 505 VMVDDRAGVSPGVKFTDAELIGVPTILVVG-RGAKDGVVELKDRRTGEREELPVDEALSR 563

Query: 438 AS 439
            +
Sbjct: 564 LT 565


>gi|313816766|gb|EFS54480.1| prolyl-tRNA synthetase [Propionibacterium acnes HL059PA1]
          Length = 581

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 106/271 (39%), Positives = 153/271 (56%), Gaps = 6/271 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREAPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY+ LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKALPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           + ++        P A   D  + +  +SL  
Sbjct: 241 LPID------GLPEAEVVDTPDARTIESLVR 265



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              DV   +  D  P+   +   ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 395 GVIDVAEIREGDPAPDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ 
Sbjct: 455 SYGLGVSRAVAAIAEGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 514 GLEVLLDDRKASPGVKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572

Query: 436 NYASHRFS 443
                   
Sbjct: 573 CAVLKEVR 580


>gi|153004735|ref|YP_001379060.1| threonyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
 gi|152028308|gb|ABS26076.1| threonyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
          Length = 681

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 144/445 (32%), Gaps = 44/445 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD       L L     H+ + G   WLP G    + +   +R   ++ G 
Sbjct: 266 LARMEEVRKRDHRKLGPALGLFA--FHEVAPGAAFWLPNGTTLYNVLEDAMRRLVSKGGY 323

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA---------MIYGPTHEEVMTDI 117
            E+  P L +  LW +SG +  Y + M  + D+             M   P +      I
Sbjct: 324 QEVKTPLLFNKRLWEQSGHWGVYRENMFLVFDKESDPALPVDERLSMSLKPMNCPSHHLI 383

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           ++   +SYR+LP  ++ +    R+EL    G +       +D     L         +++
Sbjct: 384 YKMGKRSYRDLPIRYFTVDTLHRNELSGSLGGLTRVRQFAQDDAHLYLMESQIPEEVSRI 443

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++   GL+   +   + P+                          D    +   
Sbjct: 444 VELMKTVYGAFGLEF-SLLFSTRPV--------------KPEDRIGDDALWDKAEGALRA 488

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             D I     +     A Y    D     + DSL    +     ++              
Sbjct: 489 ALDRIGLPWQLNPGDGAFYGPKIDF---VVTDSLGRKWQTCTIQLDYAAP--------ER 537

Query: 298 MSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              T+ G D  +H    +     G+     A++    +     +P  +AP +  ++ +  
Sbjct: 538 FDLTYVGDDNHEHRPVVIHRAVYGSFERFIAILT---EHYAGAFPAWLAPVQARVVTVSD 594

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +       ++ A+L+  G  V  D+  +++G++   A L   P  +++G K V    V
Sbjct: 595 RFEGW---AREVQAKLATAGWRVELDESSDKLGAKIRNAQLAKIPFALVIGEKEVEAQGV 651

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
             +       + M L+         
Sbjct: 652 APRRHGGEDLKTMPLDAFEALLRRE 676


>gi|110668486|ref|YP_658297.1| threonyl-tRNA synthetase [Haloquadratum walsbyi DSM 16790]
 gi|121687233|sp|Q18H54|SYT_HALWD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|109626233|emb|CAJ52691.1| threonine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 642

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 148/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +     +   RD      +L L +  I      G+  + P G+K L+ +++  R      
Sbjct: 231 FLERRKKAKERDHRKIGQELDLFS--IPDITGPGLPLYHPDGKKILNELSSFARSLNLEA 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P L   +LW +SG Y++Y  +M  L D +D+     P +      IF  H  S
Sbjct: 289 GYEPVETPHLFRTELWKQSGHYENYVDDMF-LLDVSDEEYGLKPMNCPGHATIFDQHSWS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  +++    +R E R    G+ R   F + D + F    +  +   + M   Y  
Sbjct: 348 YRDLPVRYFEDGKVYRKEQRGELSGLSRVWSFTIDDGHLFCQPEQIEQEVTHVMDAIYSV 407

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                         ++  +      E  V   T   +     +  +       +  +   
Sbjct: 408 -------------LDTFGL------EAHVALATRPEKSVGGDEIWENAETQLRSVLESQN 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               +     A Y    D   E   D+L          ++    F    ++      T+ 
Sbjct: 449 IDYDLEPGDGAFYGPKIDFAFE---DALGRQWDGPTVQLD----FNMPDRF----ELTYT 497

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G D  DH    +     G+      V+    +GK  +W           + I        
Sbjct: 498 GEDNTDHQPVMIHRALYGSYERFFMVLIEHFNGKFPLW------LAPDQVRILPISDDQL 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I   LS     V  +D    +G +   A     P  +I+G   VS   + ++ R 
Sbjct: 552 GYAHRIKNELSD--FRVSIEDRAWTLGRKIRAAQEERVPYMIIIGDDEVSTETISVRDRK 609

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
              ++D+ L    ++    + N R
Sbjct: 610 EREKQDVDLSTFHSHLKSEYENKR 633


>gi|297562530|ref|YP_003681504.1| prolyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846978|gb|ADH68998.1| prolyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 582

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 130/438 (29%), Positives = 191/438 (43%), Gaps = 48/438 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G + + + G+Y+WLPLG+  L+NV  I+REE 
Sbjct: 4   RMSTLFLRTLREDPADAEVPSHKLLVRGGFVRRAAPGVYTWLPLGKIVLENVARIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 64  DAIGAQEVLLPALLPREYYEATGRWEEYGDTLFRLKDRKGADYLLGPTHEELFTLLVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ KFRDE RPR GV+R REF MKD+YSFD+  EG + SY     +Y
Sbjct: 124 YSSYKDFPVTLYQIQEKFRDEARPRAGVLRGREFHMKDSYSFDIDDEGLRASYADHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +R+F RLGL+ + + A SG +GG  S EF+ +A TGE   F      D+    E      
Sbjct: 184 IRVFDRLGLEYVIVSATSGAMGGSASEEFLAVAPTGE-DTFVRSTESDYAANVEAVAVPA 242

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             +L        A +        + L D L                   G  +S   +  
Sbjct: 243 PEALPVEGLPEAAVHHTPDTATIQTLVDFLNGAG--------------LGRDFSEADTLK 288

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                     V + +   GA       +    D +        A     +  ++  D   
Sbjct: 289 ---------NVLVKTRAPGAKEWELLAVGLPGDREVDFKRLEAALEPAEVALLEEADFAA 339

Query: 362 RDACEKIY---ARLSKVGCDVFWDDM-----------GEQIGSQFAVADLLGFPLQVIVG 407
                K Y     L         D              E      A   ++G    ++ G
Sbjct: 340 NPFLVKGYIGPRALLDNKVRYLVDPRVVTGTSWVTGADE------ADHHVVG----LVAG 389

Query: 408 SKFVSDSKVEIKHRLTGI 425
             FV D  +++     G 
Sbjct: 390 RDFVPDGTIDVAEVRDGD 407



 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 71/183 (38%), Positives = 96/183 (52%), Gaps = 6/183 (3%)

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T DV   +  D  P+ +      RGIE+GHIF  G KY+        G DGK   + MG
Sbjct: 396 GTIDVAEVRDGDPSPDGRGTLYTARGIEIGHIFQLGRKYTDAFQVDALGPDGKPRRITMG 455

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R VAAV+E SHD KG++WP  VAP  +    +        +   +I   L   
Sbjct: 456 SYGIGVSRAVAAVVEQSHDDKGVVWPREVAPADVH--VVGTGKGEQIEEALRIARELEAR 513

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V  DD  G   G +F  A+LLG P  VIVG + + D  VE++ R TG RE+++L E+
Sbjct: 514 GLRVLVDDRKGVSPGVKFTDAELLGVPTGVIVG-RGLKDGLVELRDRATGDREEVALAEI 572

Query: 435 INY 437
           ++ 
Sbjct: 573 VDR 575


>gi|88809590|ref|ZP_01125097.1| threonyl-tRNA synthetase [Synechococcus sp. WH 7805]
 gi|88786340|gb|EAR17500.1| threonyl-tRNA synthetase [Synechococcus sp. WH 7805]
          Length = 611

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 68/431 (15%), Positives = 137/431 (31%), Gaps = 36/431 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD       L L + +  +   G+  W P G +    +    R+     G   + 
Sbjct: 203 EEALRRDHRRIGKDLDLFS-IEDEAGAGLVFWHPRGARMRLLIEDFWRQAHFEGGYELLY 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW  SG  D Y + M      +++     P +       + S ++SYR LP 
Sbjct: 262 TPHVADISLWKTSGHLDFYAESMFGPMQVDEREYQLKPMNCPFHVLTYASKLRSYRELPI 321

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + ++   +R E      G+MR R F   DA+ F L  + S     K+     RI     
Sbjct: 322 RWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCLPEQISDE-ILKILDLTERILSTFD 380

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P                           D          +       I 
Sbjct: 381 FNTYEINLSTRPEKS-----------------IGDDAVWDLATKGLIEALERKGWAYKID 423

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E   A Y    D+   K+ D++    + S   ++    F    ++ L   A       + 
Sbjct: 424 EGGGAFYGPKIDL---KIEDAIGRMWQCSTIQLD----FNLPERFKLDYIAA--DGSKQR 474

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             +   +      R    + E+                              +   E++ 
Sbjct: 475 PIMIHRAIFGSLERFFGIMTENYAGDYPFWLAPEQVRLLPVT-------DEVQPYAERLL 527

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L++VG     D  G+++G      + +  P+  ++G+K    + V ++ R  G    +
Sbjct: 528 DQLTQVGVRATIDRSGDRLGKLIRTGEQMKIPVLAVIGAKEAEQNAVSLRSRRDGDLGVV 587

Query: 430 SLEEVINYASH 440
           ++ +++    +
Sbjct: 588 TMADLLRAVQN 598


>gi|258593203|emb|CBE69542.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS) [NC10
           bacterium 'Dutch sediment']
          Length = 572

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 108/262 (41%), Positives = 160/262 (61%), Gaps = 1/262 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++  +P L+E P +AE  SHKLM+R G++ Q + GIY  LPLGQ+ +D ++AIIREE
Sbjct: 1   MRWTRSLIPTLKEEPAEAEAISHKLMVRAGLVRQLAAGIYITLPLGQRVMDKISAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR    E+++P L  A+LW ++GR+ + G+EM RL DR  + M  G THEEV+  +   
Sbjct: 61  MNRIDGQEITMPVLHPAELWQQTGRWATIGEEMFRLYDRGKRQMCLGMTHEEVVAWLAAR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR+LP T+YQIQ K RDE RP+ GV+R+REF+MKD+YS D    G + SY     +
Sbjct: 121 EIRSYRDLPQTWYQIQTKLRDEARPKSGVLRTREFVMKDSYSLDRDDAGLEKSYELHKEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDF 239
           Y RIF R GL    + ++ G +GG ++HEF+  ++ GE ++  C +      I    +  
Sbjct: 181 YCRIFTRCGLSFHAVESDPGMMGGAVAHEFMAPSEAGEDEIALCDRCGYSANIELAVSRP 240

Query: 240 DDIISLNSIVEQWTAPYAATSD 261
              +     +E+   P A T +
Sbjct: 241 RSPVFTTWDLEEIATPGAGTIE 262



 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/196 (35%), Positives = 109/196 (55%), Gaps = 4/196 (2%)

Query: 254 APYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                 +D+H     D  P  E      R IE+G+IF  GTKYS+PM A +    G+++ 
Sbjct: 368 HFQPRWADIHQVSNGDRCPHCEGSLRIERVIEIGNIFRLGTKYSIPMKAVYLSEAGEEYP 427

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + MGSYGIG  R+ AA +E  HD  GIIWP ++APF++ L+ +   DQ   +  E +Y++
Sbjct: 428 IVMGSYGIGLARIAAAAVEQHHDDLGIIWPSAIAPFQLHLLPVNMRDQKMAELAEALYSQ 487

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G +  +DD  E+ G +F  ADLLG P+++ +G++ + +  V++K R T     + L
Sbjct: 488 LQQAGIETLYDDRDERAGVKFKDADLLGLPMRMTIGTRTLKEGMVDLKIRKTAKEVQIPL 547

Query: 432 EEVINYASHRFSNNRP 447
            E ++      S  RP
Sbjct: 548 SEAVSTVHSLLS--RP 561


>gi|84998192|ref|XP_953817.1| threonyl-tRNA synthetase [Theileria annulata]
 gi|65304814|emb|CAI73139.1| threonyl-tRNA synthetase, putative [Theileria annulata]
          Length = 743

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 154/457 (33%), Gaps = 51/457 (11%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +   ++E   RD       L L         S G   WLP G K  + +   +R+   
Sbjct: 313 KMYKNRIEEAKQRDHRTIGTDLKLF--YFDTVHSPGSCFWLPNGAKIYNRLVEFMRDNYR 370

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P + S DLW +SG YD+Y + M  L +  D      P +      +F+   
Sbjct: 371 VRGYQEVITPNIFSCDLWKQSGHYDNYKENM-YLFNLEDTEWGMKPMNCPGHCLMFKHLF 429

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY+ LP       +  R+EL     G+ R R F   DA+ F    +             
Sbjct: 430 LSYKQLPLRLADFGVLHRNELTGSLSGLTRVRRFQQDDAHIFCTREQIMDE--------V 481

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L I   +G               D  +EF     T   +     +  +    S     + 
Sbjct: 482 LNILTFIGKVYSLF---------DFRYEF--KLSTKPAKALGEDELWEIAEKSLEEALNK 530

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             +  ++     A Y    DV    LFD L    +     ++      F  +Y     ++
Sbjct: 531 TGTKWTMNPGDGAFYGPKIDV---VLFDCLDREHQCGTIQLDFNLPIRFNLEYRDKSESS 587

Query: 302 FKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            +    G +  V +     G++    A++    +      P  ++P ++  I I  +   
Sbjct: 588 AENVRCGFNRPVIIHRAIFGSIERFVAIVL---EQTKGKLPFWLSPNQLLFIPITDNH-- 642

Query: 361 CRDACEKIYARLSK----------------VGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
             D   ++Y + +                 +G +V  D     I  +        +    
Sbjct: 643 -LDYALELYEKFNALGSNTNYIILIMIINGLGYNVDVDKSNNTINKKIKFGQQQRWNYMG 701

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           IVG + V    V ++ R +  +  +SL++++     +
Sbjct: 702 IVGDREVETRTVSLRPRDSDEQNVISLDDLVKLFESQ 738


>gi|254796675|ref|YP_003081511.1| threonyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
 gi|254589907|gb|ACT69269.1| threonyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
          Length = 647

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 153/445 (34%), Gaps = 41/445 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L E  R D       + L    + + ++G   W   G      +   IR +   
Sbjct: 232 ESYLSFLHEAKRRDHRAIGKTMELF--HLQEEAQGQVFWHENGFLLYRVLENYIRSKLKA 289

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P + S  LW  SG +  + + M  +   +D      P +     ++F+  +K
Sbjct: 290 HDYREVKTPVVYSKCLWERSGHWSKFKENMF-VIRSDDGEFSLKPMNCPAHIEVFKQSLK 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R+E      G+MR R F+  DA+ F    +    +         
Sbjct: 349 SYRDLPLRLAEFGMCHRNEASGALHGLMRVRGFVQDDAHIFCTPEQICDETVAF-CELLK 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++  LG   + +R    P     + E                   D    +  +  D  
Sbjct: 408 EVYRDLGFTEVEVRFSDRPEVRLGNDE-----------------TWDKAEIALKSAMDKA 450

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             + ++     A Y    +     L D+L    +     ++    F    +    + AT+
Sbjct: 451 GLVYTLNPGEGAFYGPKIEF---VLVDALKRKWQCGTLQVD----FVLPER----LDATY 499

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +G K H V +    +G       ++   +DGK  +W        +++       +  
Sbjct: 500 IDHEGKKQHPVMLHRAILGTFERFLGILIEHYDGKFPLWLAPTQVAVLTIT------EKV 553

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   LSK G     D   ++I  +         P+  I+G     ++ V ++  
Sbjct: 554 EEYAKSLLNHLSKTGIRAVSDFSNQRIDYKIRYHTTRRVPILWIIGRIEEKNNSVTVRRM 613

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            +   E  +++  ++     F+  +
Sbjct: 614 GSSESEVKTVDTALDDILGEFNVRQ 638


>gi|86608959|ref|YP_477721.1| threonyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557501|gb|ABD02458.1| threonyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 603

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 68/444 (15%), Positives = 142/444 (31%), Gaps = 42/444 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   L+E  R D      +L L      +   G+  W P G      +   +++EQ + G
Sbjct: 192 YKRRLEEAKRRDHRKLGKELGLFL-FSDEVGPGLPLWTPKGTTLRWVLEDFLKQEQLKRG 250

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFR 119
            + +  P +   DL+  SG +  Y ++M  +   N++A       +  P +      I++
Sbjct: 251 YLPVVTPHIARVDLFKISGHWQKYREDMFPMMAENEQARAAEQGFVMKPMNCPFHIQIYK 310

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           S ++SYR+LP  + +    +R E     G +        D     + P+  +  + K+  
Sbjct: 311 SELRSYRDLPLRYAEFGTVYRYEQSGELGGLTRVRGFTVDDAHLFVRPDQLEEEFLKVVD 370

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F +L LK    R                  D    +   S +  D    +     
Sbjct: 371 LILVVFDKLKLKDFRARLS--------------FRDPKSDKYLGSPEDWDRAENAIRRAV 416

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           + +   +       A Y    D       D+L    ++    ++  +   F         
Sbjct: 417 EKLSMPHFEGIGEAAFYGPKLDFI---FRDALDREWQLGTVQVDYQNPQRFD-------- 465

Query: 300 ATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             +   DG      M          R++  +IE                           
Sbjct: 466 LQYVAEDGSRQRPVMIHRAPFGSLERLIGILIEEYAGDFPFWLAPEQVRILPV------- 518

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                    ++  +L + G  V  D   +++  +   A+    P  +IVG +  +   V 
Sbjct: 519 SDQYLGYATQVRDQLREQGIRVHIDADSDRLPKKIRNAEKARIPFMLIVGEQEQAAGTVS 578

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++ R       +++ + ++     
Sbjct: 579 VRQRHGQELGSLTVADFLDQVQAL 602


>gi|313813363|gb|EFS51077.1| prolyl-tRNA synthetase [Propionibacterium acnes HL025PA1]
          Length = 581

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 106/271 (39%), Positives = 155/271 (57%), Gaps = 6/271 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           + ++        P A   D  + +  +SL  
Sbjct: 241 LPID------GLPEAEVVDTPDARTIESLVR 265



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              DV   +  D  P+   +   ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 395 GVIDVAEIREGDPAPDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ 
Sbjct: 455 SYGLGVSRAVAAIAEGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 514 GLEVLLDDRKASPGVKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572

Query: 436 NYASHRFS 443
                   
Sbjct: 573 CAVLKEVR 580


>gi|313811577|gb|EFS49291.1| prolyl-tRNA synthetase [Propionibacterium acnes HL083PA1]
          Length = 581

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 106/271 (39%), Positives = 155/271 (57%), Gaps = 6/271 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           + ++        P A   D  + +  +SL  
Sbjct: 241 LPID------GLPEAEVVDTPDARTIESLVR 265



 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              DV   +  D  P+   +   ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 395 GVIDVAEIREGDPAPDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ 
Sbjct: 455 SYGLGVSRAVAAIAEGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 514 GLEVLLDDRKASPGVKFADSEILGMPTSVVVGRR-LKDGLVEVRDRSTGENRQVSVAEAV 572

Query: 436 NYASHRFS 443
                   
Sbjct: 573 CAVLKEVR 580


>gi|313773524|gb|EFS39490.1| prolyl-tRNA synthetase [Propionibacterium acnes HL074PA1]
 gi|313831317|gb|EFS69031.1| prolyl-tRNA synthetase [Propionibacterium acnes HL007PA1]
 gi|313834927|gb|EFS72641.1| prolyl-tRNA synthetase [Propionibacterium acnes HL056PA1]
 gi|314974192|gb|EFT18288.1| prolyl-tRNA synthetase [Propionibacterium acnes HL053PA1]
 gi|314976699|gb|EFT20794.1| prolyl-tRNA synthetase [Propionibacterium acnes HL045PA1]
 gi|314984337|gb|EFT28429.1| prolyl-tRNA synthetase [Propionibacterium acnes HL005PA1]
 gi|315095331|gb|EFT67307.1| prolyl-tRNA synthetase [Propionibacterium acnes HL038PA1]
 gi|327328406|gb|EGE70168.1| proline--tRNA ligase [Propionibacterium acnes HL096PA2]
 gi|327444193|gb|EGE90847.1| prolyl-tRNA synthetase [Propionibacterium acnes HL043PA2]
 gi|327444928|gb|EGE91582.1| prolyl-tRNA synthetase [Propionibacterium acnes HL043PA1]
 gi|328760064|gb|EGF73644.1| proline--tRNA ligase [Propionibacterium acnes HL099PA1]
          Length = 581

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 106/271 (39%), Positives = 155/271 (57%), Gaps = 6/271 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           + ++        P A   D  + +  +SL  
Sbjct: 241 LPID------GLPEAEVVDTPDARTIESLVR 265



 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              DV   +  D  P+   +   ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 395 GVIDVAEIREGDPAPDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ 
Sbjct: 455 SYGLGVSRAVAAIAEGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 514 GLEVLLDDRKASPGVKFADSEILGMPTSVVVGRR-LKDGLVEVRDRSTGENRQVSVAEAV 572

Query: 436 NYASHRFS 443
                   
Sbjct: 573 CAVLKEVR 580


>gi|313763586|gb|EFS34950.1| prolyl-tRNA synthetase [Propionibacterium acnes HL013PA1]
 gi|313807954|gb|EFS46435.1| prolyl-tRNA synthetase [Propionibacterium acnes HL087PA2]
 gi|313822153|gb|EFS59867.1| prolyl-tRNA synthetase [Propionibacterium acnes HL036PA1]
 gi|313823613|gb|EFS61327.1| prolyl-tRNA synthetase [Propionibacterium acnes HL036PA2]
 gi|313825936|gb|EFS63650.1| prolyl-tRNA synthetase [Propionibacterium acnes HL063PA1]
 gi|314914740|gb|EFS78571.1| prolyl-tRNA synthetase [Propionibacterium acnes HL005PA4]
 gi|314919298|gb|EFS83129.1| prolyl-tRNA synthetase [Propionibacterium acnes HL050PA1]
 gi|314920792|gb|EFS84623.1| prolyl-tRNA synthetase [Propionibacterium acnes HL050PA3]
 gi|314924644|gb|EFS88475.1| prolyl-tRNA synthetase [Propionibacterium acnes HL036PA3]
 gi|314930471|gb|EFS94302.1| prolyl-tRNA synthetase [Propionibacterium acnes HL067PA1]
 gi|314954371|gb|EFS98777.1| prolyl-tRNA synthetase [Propionibacterium acnes HL027PA1]
 gi|314957443|gb|EFT01546.1| prolyl-tRNA synthetase [Propionibacterium acnes HL002PA1]
 gi|314962089|gb|EFT06190.1| prolyl-tRNA synthetase [Propionibacterium acnes HL002PA2]
 gi|314968504|gb|EFT12602.1| prolyl-tRNA synthetase [Propionibacterium acnes HL037PA1]
 gi|314978817|gb|EFT22911.1| prolyl-tRNA synthetase [Propionibacterium acnes HL072PA2]
 gi|314986526|gb|EFT30618.1| prolyl-tRNA synthetase [Propionibacterium acnes HL005PA2]
 gi|314990885|gb|EFT34976.1| prolyl-tRNA synthetase [Propionibacterium acnes HL005PA3]
 gi|315081252|gb|EFT53228.1| prolyl-tRNA synthetase [Propionibacterium acnes HL078PA1]
 gi|315083450|gb|EFT55426.1| prolyl-tRNA synthetase [Propionibacterium acnes HL027PA2]
 gi|315087136|gb|EFT59112.1| prolyl-tRNA synthetase [Propionibacterium acnes HL002PA3]
 gi|315089308|gb|EFT61284.1| prolyl-tRNA synthetase [Propionibacterium acnes HL072PA1]
 gi|315099214|gb|EFT71190.1| prolyl-tRNA synthetase [Propionibacterium acnes HL059PA2]
 gi|315100435|gb|EFT72411.1| prolyl-tRNA synthetase [Propionibacterium acnes HL046PA1]
 gi|315106771|gb|EFT78747.1| prolyl-tRNA synthetase [Propionibacterium acnes HL030PA1]
 gi|315109012|gb|EFT80988.1| prolyl-tRNA synthetase [Propionibacterium acnes HL030PA2]
 gi|327329728|gb|EGE71484.1| proline--tRNA ligase [Propionibacterium acnes HL096PA3]
 gi|327454965|gb|EGF01620.1| prolyl-tRNA synthetase [Propionibacterium acnes HL087PA3]
 gi|327457749|gb|EGF04404.1| prolyl-tRNA synthetase [Propionibacterium acnes HL083PA2]
 gi|328752168|gb|EGF65784.1| prolyl-tRNA synthetase [Propionibacterium acnes HL020PA1]
 gi|328755200|gb|EGF68816.1| prolyl-tRNA synthetase [Propionibacterium acnes HL087PA1]
 gi|328758320|gb|EGF71936.1| prolyl-tRNA synthetase [Propionibacterium acnes HL025PA2]
          Length = 581

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 106/271 (39%), Positives = 155/271 (57%), Gaps = 6/271 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           + ++        P A   D  + +  +SL  
Sbjct: 241 LPID------GLPEAEVVDTPDARTIESLVR 265



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              DV   +  D  P+   +   ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 395 GVIDVAEIREGDPAPDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ 
Sbjct: 455 SYGLGVSRAVAAIAEGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 514 GLEVLLDDRKASPGVKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572

Query: 436 NYASHRFS 443
                   
Sbjct: 573 CAVLKEVR 580


>gi|304319895|ref|YP_003853538.1| Threonyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
 gi|303298798|gb|ADM08397.1| Threonyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
          Length = 657

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 149/448 (33%), Gaps = 55/448 (12%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E   RD      ++ L    + + + G   W P G      + A IR  
Sbjct: 227 KALKAYLTRLEEAEKRDHRRLGKQMDLF--HLQEEAHGSVFWHPKGYTMWLALEAYIRRR 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-------------RLADRNDKAMIYG 107
            +  G  E+  P L  A LW  SG +  Y + M               + D   K M   
Sbjct: 285 LDAAGYKEVKTPQLIDAKLWQSSGHWGKYSQNMFVVPDEVPDVEGEGPVIDPEAKLMAVK 344

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLT 166
           P +      IFR  I SYR+LP    +     R+E      G+MR R+F   DA+ F   
Sbjct: 345 PMNCPAHVQIFRQGITSYRDLPIRMAEFGCCHRNEPHGALHGIMRVRQFTQDDAHIFCTE 404

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +  + +  +       ++  LG + + +   + P     + EF    ++   +   +  
Sbjct: 405 EQIVEETI-RFCELASSVYRDLGFEDVRVAMATRPEQRIGTDEFWDKMESALEEALIAAG 463

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                +P E                  A YA   + H   L D++  + +     ++   
Sbjct: 464 LEFEVLPGE-----------------GAFYAPKLEYH---LRDAIGRSWQCGTLQLDALL 503

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSV 344
                      + A +   DG      M    I     R +  +IE+      +    + 
Sbjct: 504 P--------ERLDAVYIDEDGAKKRPIMLHRAILGSMERFLGILIENHAGRMPLWLAPTQ 555

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
                   ++ A  +   DA              V  D   E+I  +         P+  
Sbjct: 556 IVVATITTDVNAFAEEAADAF-------RAANLRVETDLRNEKINYKVREHSDGKVPIIA 608

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           ++G++   +  + ++   +   + +SL+
Sbjct: 609 VIGAREAEERTLSVRRLGSKQSQTLSLD 636


>gi|313836817|gb|EFS74531.1| prolyl-tRNA synthetase [Propionibacterium acnes HL037PA2]
 gi|314929774|gb|EFS93605.1| prolyl-tRNA synthetase [Propionibacterium acnes HL044PA1]
 gi|314972203|gb|EFT16300.1| prolyl-tRNA synthetase [Propionibacterium acnes HL037PA3]
          Length = 581

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 104/252 (41%), Positives = 150/252 (59%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + L  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVLRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  GIGAQEVSFPALLASDPYKETGRWAEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDDAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S D     + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVHSADGYAANVEAVRIAAPDP 240

Query: 243 ISLNSIVEQWTA 254
           + ++ + E    
Sbjct: 241 LPIDGLPEAEVV 252



 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 4/170 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              DV   +  D  P+   +   +RGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 395 GVIDVAEIREGDPAPDGSGELHLSRGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E + D KG++WP  VAPF + ++       +  +   +I + L++V
Sbjct: 455 SYGLGVSRAVAAIAEGTCDEKGLVWPREVAPFDVQVLATGKGTDILDE-ATRIASELAEV 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           G +V  DD     G +FA +++LG P  V+VG + + D  VE++ R TG 
Sbjct: 514 GLEVLLDDRKASPGVKFADSEILGVPTSVVVG-RGLKDGLVEVRDRATGE 562


>gi|284992392|ref|YP_003410946.1| prolyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
 gi|284065637|gb|ADB76575.1| prolyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
          Length = 582

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 97/245 (39%), Positives = 139/245 (56%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ SH+L++R G I + + G ++WLPLG +   NV  ++REE 
Sbjct: 4   RMSTLFLRTLRDDPADAEVPSHRLLVRAGYIRRAAPGGFTWLPLGYRVFRNVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R GA E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 64  DRMGAQEVHFPALLPREPYEATNRWTEYGPNLFRLQDRRGADFLLGPTHEEMFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + YQIQ K+RDE RPR G+ R REF MKD+YSFD+   G   SY     +Y
Sbjct: 124 YSSYKDLPLSLYQIQTKYRDEARPRAGLFRGREFTMKDSYSFDVDDAGLDKSYAAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +R+F RLGL  + + A SG +GG  S EF+     GE     S       + +  T   D
Sbjct: 184 IRVFDRLGLDYVIVSAMSGAMGGSRSEEFLHPTPIGEDTFVRSSGGYAANVEAVTTVVPD 243

Query: 242 IISLN 246
            + L 
Sbjct: 244 EVPLE 248



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/189 (32%), Positives = 91/189 (48%), Gaps = 5/189 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +       D  P+       ARG+E+GHIF  G KY+  +       +GK   V MG
Sbjct: 395 GVVEAAEVLAGDPAPDGSGPLELARGVEMGHIFQLGRKYAEALDLKVLDENGKLVTVTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R VAA+ ES+HD  G++WP  VAP  + ++     D    +  E +   L   
Sbjct: 455 SYGIGVSRAVAAIAESTHDELGLVWPREVAPADVHVVATG-KDAAVFETAEALAQELLAA 513

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +DD      G +F  A+LLG P  V VG + +++  +E++ R TG RE++ + EV
Sbjct: 514 GLTVLYDDRPKVSPGVKFKDAELLGMPTIVTVG-RGLAEGVLELRDRATGEREEVPVGEV 572

Query: 435 INYASHRFS 443
                    
Sbjct: 573 AARVLAAVR 581


>gi|256832247|ref|YP_003160974.1| prolyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
 gi|256685778|gb|ACV08671.1| prolyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
          Length = 594

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 116/279 (41%), Positives = 155/279 (55%), Gaps = 2/279 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASH+L++R G I + + GIYSWLPLG + LD V+A++REE 
Sbjct: 4   RLSTLFVRTLREDPVDAEVASHRLLVRAGYIRRAAPGIYSWLPLGLRVLDKVDAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R GA  +  P L   + +  +GR+  YG  + RL DR D   +  PTHEE+ T + +  
Sbjct: 64  ERAGAQRVHFPALLPREPYEATGRWTEYGPNLFRLQDRKDGDYLLAPTHEEMFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFDLT EG   SY     +Y
Sbjct: 124 YSSYKDLPVTLYQIQTKYRDEARPRAGLIRGREFIMKDAYSFDLTEEGLAESYRAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL  + + A SG +GG  S EF+   D GE     S       + +  T    
Sbjct: 184 ERIFRRLGLDYVIVAATSGAMGGSRSEEFLTPTDIGEDTFVRSPGGYAANVEAVTTIAPP 243

Query: 242 I--ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
               +     +    P A+T D     L D  P   R  
Sbjct: 244 AQDATNVPAAQTVNTPGASTIDALVTWLNDHEPREDRAW 282



 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 96/189 (50%), Gaps = 6/189 (3%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+       ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 402 GTIEAAQVRAGDPAPDGSGPLDLARGIEIGHIFQLGRKYAEALGLKVLDVNGKHTTVTMG 461

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+AA+ ++ HD +G+ WP  VAP  + L+     D    +A E +  RLS  
Sbjct: 462 SYGIGVTRVMAALAQAHHDSQGLAWPIQVAPAHVHLVATG-KDARIFEAAESLAQRLSDR 520

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD      G +F  A+L G P  V+VG + + +  +E + R+ G  + + + + 
Sbjct: 521 GVEVIYDDRVKVSPGVKFKDAELFGVPFIVVVG-RGLDEGTIEFRTRV-GEPQQVHINDA 578

Query: 435 INYASHRFS 443
           ++  +   +
Sbjct: 579 VDVVTDAVA 587


>gi|302561695|ref|ZP_07314037.1| threonyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
 gi|302479313|gb|EFL42406.1| threonyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
          Length = 658

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 132/439 (30%), Gaps = 36/439 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L + +  Q   G+  + P G      +    R      G   +  
Sbjct: 254 EAEKRDHRKLGSELDLFS-IPEQIGSGLAVFHPKGGIIRRVMEDYSRRRHEEEGYEFVYT 312

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+  SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 313 PHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 372

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R+R F   DA+ +    + S+   +K     L +    G
Sbjct: 373 RLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTREQMSEEL-DKTLTFVLNLLRDYG 431

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +                    +   S +  +    +     +         
Sbjct: 432 LTDFYLELST----------------KDPEKFVGSDEAWEEATQTLREVAEKQGLELVAD 475

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++    F    ++ L  +A       K 
Sbjct: 476 PGGAAFYGPKI---SVQTKDAIGRTWQMSTIQLD----FNLPERFDLEYTAA---DGSKT 525

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +     G++    AV+   + G    W   V    I +           +  EK  
Sbjct: 526 RPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAPVQAVGIPVG------DAHVEYLEKFA 579

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
               + G  V  D   +++  +      L  P  +IVG + ++   V  ++R       +
Sbjct: 580 TEARQKGLRVEVDSSSDRMQKKIRTQQKLKVPFMIIVGDEDMNAGTVSFRYRDGSQENGI 639

Query: 430 SLEEVINYASHRFSNNRPV 448
             E+ +            V
Sbjct: 640 PREQALAKLLDVVERRVQV 658


>gi|157692336|ref|YP_001486798.1| prolyl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|166980100|sp|A8FDC1|SYP_BACP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157681094|gb|ABV62238.1| proline--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 565

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DAE  SH+L++R G I Q++ GIY +LPL  K + ++ +I+R+E
Sbjct: 1   MRQSLTFIPTLREVPADAEAKSHQLLVRAGFIRQNTSGIYHYLPLAHKVIQHIQSIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA E+ +P LQ A++W ESGR+ +YG E++R+ DR+ +    GPTHEEV+T + RS
Sbjct: 61  MEKAGAAELLMPVLQQAEMWQESGRWYTYGPELMRMKDRHGREFALGPTHEEVITSLVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  +PE    +YNKMF +
Sbjct: 121 EVKSYKKLPLTLYQIQSKFRDEQRPRFGLLRGREFIMKDAYSFHSSPESLDDTYNKMFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F ++GL   P+ A+SG +GG  +HEF+ L++ GE  +  S       
Sbjct: 181 YSNVFSKVGLNFRPVIADSGAMGGKDTHEFMALSEVGEDTIAYSDTSSYAA 231



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/182 (35%), Positives = 108/182 (59%), Gaps = 3/182 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   +  D  P+ +      +GIEVG +F  GT+YS  M AT+   +G+   + MG YG
Sbjct: 384 DLRFIQEGDVSPDGEGTIQFAKGIEVGQVFKLGTRYSESMDATYLDENGRAQPMIMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R ++A++E  HD KGIIWP++VAP+ + L+ +   +   ++  E +Y RL   G D
Sbjct: 444 IGISRTLSAIVEQHHDEKGIIWPEAVAPYDLHLLALNMKNDAQKELAETLYERLENEGFD 503

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V +DD  E+ G +FA +DL+G P+++  G +   +  VE+K R +G   ++S++E+I++ 
Sbjct: 504 VLFDDRQERAGVKFADSDLIGLPIRISCGKRS-EEGIVEVKFRKSGESHEVSVDELISFI 562

Query: 439 SH 440
             
Sbjct: 563 RQ 564


>gi|284991611|ref|YP_003410165.1| threonyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
 gi|284064856|gb|ADB75794.1| threonyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
          Length = 690

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 66/448 (14%), Positives = 132/448 (29%), Gaps = 49/448 (10%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R      G   ++ 
Sbjct: 260 EAERRDHRRLGAELDLFS-FPDEIGSGLAVFHPKGGVVRREMEDYSRRRHEEAGYSFVNT 318

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDIFR 119
           P +    L+  SG  + Y + M                 R  +     P +  V   +FR
Sbjct: 319 PHITKGQLFQTSGHLEWYAEGMYPAMHLDEERDAEGKVRRQGQDYYLKPMNCPVHNLVFR 378

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SY+ LP   ++    +R E      G+ R+R F   DA+ +    +        + 
Sbjct: 379 SRGRSYKELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTPEQMQGE-IRSLL 437

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    GL+   +   +                        S +  +    +    
Sbjct: 438 QFVLDLLADYGLEDFYLELSTRNPEKS----------------IGSDEDWERATDALREA 481

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +       +     A YA      + +  D++    ++S   +++     FG       
Sbjct: 482 AEASGLDLVLDPGGAAFYAPKI---SVQARDAIGRTWQMSTIQVDLMLPERFG------- 531

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +  ADG       +     G+M     V+   + G    W   V    I +      
Sbjct: 532 -LEYTAADGTRQRPVMIHRALFGSMERFFGVLTEHYAGAFPAWLAPVQVVGIPVT----- 585

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                     +  +L   G  V  DD  +++  +   A     P  +I G+       V 
Sbjct: 586 -DEQVGYLRDVALQLRARGIRVEVDDSDDRMQKKIRTASKQRIPFVLIAGATDAEAGAVS 644

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            + R       + +E+ +   +   +  
Sbjct: 645 FRFRDGSQHNGVPVEKAVAAIAEWVAGR 672


>gi|313819523|gb|EFS57237.1| prolyl-tRNA synthetase [Propionibacterium acnes HL046PA2]
          Length = 581

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 106/271 (39%), Positives = 154/271 (56%), Gaps = 6/271 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY+ LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKALPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           + ++        P A   D  + +  +SL  
Sbjct: 241 LPID------GLPEAEVVDTPDARTIESLVR 265



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              DV   +  D  P+   +   ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 395 GVIDVAEIREGDPAPDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ 
Sbjct: 455 SYGLGVSRAVAAIAEGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 514 GLEVLLDDRKASPGVKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572

Query: 436 NYASHRFS 443
                   
Sbjct: 573 CAVLKEVR 580


>gi|307200699|gb|EFN80796.1| Threonyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator]
          Length = 691

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 149/441 (33%), Gaps = 44/441 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   IR E  + G  E+ 
Sbjct: 285 EEAAKRDHRKIGKEQELF--FFHELSPGSCFFQPRGAYIYNTLIDFIRSEYRKRGFQEVI 342

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + ++ LW  SG +  Y + M    D   +     P +      IF    +S+R LP 
Sbjct: 343 SPNIYNSKLWQVSGHWQHYAENMFSF-DVEKETYALKPMNCPGHCMIFDVRSRSWRELPL 401

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+E+     G+ R R F   DA+ F    + +K            ++   G
Sbjct: 402 RLADFGVLHRNEMSGALTGLTRVRRFQQDDAHIFCSVDQINKE-ILSALDFLRHVYSVFG 460

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F +   T   +        +    +     +      ++ 
Sbjct: 461 FT------------------FDLCLSTRPEKFLGDIAIWNQAEKALEDSLNTFDEPWTLN 502

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
            Q  A Y    D+    + D+L    + +   ++    F    ++    + ++    G+ 
Sbjct: 503 PQDGAFYGPKIDI---TIRDALKRAHQCATIQLD----FQLPIRF----NLSYVNESGEK 551

Query: 310 -HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              V +    +G++  + A++    +     WP  ++P +  ++ +        +   ++
Sbjct: 552 VRPVIIHRAILGSVERMIAILT---ESYAGKWPFWLSPRQAMVVPVA---SQLDEYAYQV 605

Query: 369 YARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             +L   G  V  D D  +    +   A L  F   ++VG K  +   V I+ R   +  
Sbjct: 606 KQKLWDAGIMVEIDVDPNDSFNKKIRNAQLAQFNFILVVGEKERNAGTVNIRTRDNVVHG 665

Query: 428 DMSLEEVINYAS--HRFSNNR 446
           +M +E++I          + R
Sbjct: 666 EMGVEDLIEKLKILKETKDRR 686


>gi|325672628|ref|ZP_08152324.1| threonine--tRNA ligase [Rhodococcus equi ATCC 33707]
 gi|325556505|gb|EGD26171.1| threonine--tRNA ligase [Rhodococcus equi ATCC 33707]
          Length = 683

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 58/441 (13%), Positives = 123/441 (27%), Gaps = 49/441 (11%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R+     G   +  
Sbjct: 257 EAERRDHRKLGAELDLFS-FPDELGSGLPVFHPKGGIIRQEMENYSRKRHVEEGYEFVYS 315

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDIFR 119
           P +    L+  SG  D Y   M                 +  +     P +  +   +F 
Sbjct: 316 PHITKGHLYEVSGHLDWYKDGMFPAMHIDEELNEDGTVRKPGQDYYLKPMNCPMHNLVFG 375

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP   ++    +R E      G+ R R     DA+ +    +          
Sbjct: 376 SRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYCTKEQMRDEL-TTTL 434

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    GL    +   +                    +        +    +    
Sbjct: 435 KFVLGLLKDYGLDDFYLELST----------------KNPDKFVGDDALWEEATETLREV 478

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +             A Y       + ++ D+L  + ++S   ++    F    ++    
Sbjct: 479 GEASGLNLVPDPGGAAFYGPKI---SVQVQDALGRSWQMSTIQLD----FNLPERFD--- 528

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + G+DG       +     G++     V+   + G    W   V    I +      
Sbjct: 529 -LEYTGSDGTKQRPVMIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPVA----- 582

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D    +  +L   G     D   +++  +         P  ++ G + V    V 
Sbjct: 583 -EAFEDHLFDVVKQLKAAGVRADVDVSDDRMQKKIRNHTTQKVPFMLLAGERDVEAGAVS 641

Query: 418 IKHRLTGIREDMSLEEVINYA 438
            + R       + + + +   
Sbjct: 642 FRFRDGTQVNGVPVADAVETI 662


>gi|320096236|ref|ZP_08027820.1| proline--tRNA ligase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976817|gb|EFW08576.1| proline--tRNA ligase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 594

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 101/238 (42%), Positives = 142/238 (59%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DAE+ SHKL++R G I + + GIY+WLPLG + L  +  I+REE +
Sbjct: 5   YSTLFLRTLREDPADAEVNSHKLLVRAGYIRRAAPGIYTWLPLGLRTLRKIEGIVREEMD 64

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R GA E+  P L  A+ +  + R++ YG  + +LADR     +  PTHEE+ T + +   
Sbjct: 65  RMGAQEVHFPGLIPAEPYKATNRWEDYGPTLFKLADRKGGDYLLAPTHEEMFTLLVKDMY 124

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFD+   G + SY     +Y 
Sbjct: 125 SSYKDLPTTLYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDIDEAGLEASYQAERDTYE 184

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           RIF RLGL+ + + A SG +GG  S EF+  +  GE     S       + +  T   
Sbjct: 185 RIFTRLGLEYVIVSAMSGAMGGSRSEEFLHPSPIGEDTFVRSPGGYAANVEAVTTPAP 242



 Score = 80.2 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 54/200 (27%), Positives = 83/200 (41%), Gaps = 31/200 (15%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+        RGIE+GHIF  G+KY+  +  +    +GK   V MG
Sbjct: 402 GTIEAAGIREGDEAPDGSGPLHVERGIEIGHIFQLGSKYAEALGLSVLDENGKSRVVTMG 461

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+AA+ E++ D KG+ WP  +APF + ++     D    +A   + A L   
Sbjct: 462 SYGIGVTRVMAALAEANCDDKGLSWPAGIAPFDVHVLATG-KDNAVFEAAASLAAALDAA 520

Query: 376 GCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKF-------------VSDSKVEIKHR 421
           G DV +DD      G +FA                              +    VE++ R
Sbjct: 521 GLDVVFDDRRKVSAGVKFADF--------------ELVGVPLGVVVGRGLKTGNVEVRVR 566

Query: 422 LTGIREDMSLEEVINYASHR 441
            TG   ++ ++         
Sbjct: 567 GTGESFEVPVDAAAARVVEL 586


>gi|15835484|ref|NP_297243.1| threonyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270285665|ref|ZP_06195059.1| threonyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270289673|ref|ZP_06195975.1| threonyl-tRNA synthetase [Chlamydia muridarum Weiss]
 gi|301337060|ref|ZP_07225262.1| threonyl-tRNA synthetase [Chlamydia muridarum MopnTet14]
 gi|13878797|sp|Q9PJF9|SYT_CHLMU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|7190897|gb|AAF39666.1| threonyl-tRNA synthetase [Chlamydia muridarum Nigg]
          Length = 635

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 134/442 (30%), Gaps = 42/442 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD  +   KL L +     +S G+  + P G    + +    +    
Sbjct: 223 LKEHLHQLEEAKKRDHRVLGTKLDLFSQ--QSYSAGMPFFHPRGMVIWNALIDYWKRLHQ 280

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  ++  P L S +LW  SG +++Y + M  L   +++     P +       +++ +
Sbjct: 281 LAGYQQIQTPQLMSRELWEISGHWENYKENMYTLT-VDEEDYAIKPMNCPGCMLYYKTQL 339

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR  P    +I    R EL     G+MR R F   DA+   LTPE  +     +    
Sbjct: 340 HSYREFPLRIAEIGHVHRHELSGALSGLMRVRTFHQDDAH-VFLTPEQVEEETLNILNLV 398

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   GL    +   + P                E     S D  +    +       
Sbjct: 399 SELYGTFGLDY-HLELSTRP----------------EQGTIGSDDLWELATEALKNALVK 441

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I     A Y    D+H           K    R  + G I              
Sbjct: 442 SQKPFIISPGEGAFYGPKIDIHV----------KDAINRTWQCGTI-QLDMFLPERFDLK 490

Query: 302 FKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +    G+     M    +     R +  +IE       +                     
Sbjct: 491 YTNPQGEKSTPIMLHRALFGSIERFLGILIEHFKGRFPLWLSPEHVRIITVA-------D 543

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +++    ++ G     D   E +  +   A  +     + +G K +    + ++
Sbjct: 544 RHEARAQELAKYFTQQGILATVDQASESVSKKIRNAQNMQVNYMITIGDKELETQLLAVR 603

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R   +  D+S+E   N     
Sbjct: 604 TRDNRVLNDISVEHFTNTILEE 625


>gi|328957405|ref|YP_004374791.1| proline--tRNA ligase [Carnobacterium sp. 17-4]
 gi|328673729|gb|AEB29775.1| proline--tRNA ligase [Carnobacterium sp. 17-4]
          Length = 568

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 106/251 (42%), Positives = 155/251 (61%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L++ P +AE+ SHK++LR G I Q S G+YS+LPL  + L+ +  I+REE
Sbjct: 1   MKQSKLFIPTLRDVPNEAEVLSHKMLLRAGYIRQISSGVYSYLPLATRVLEKLKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P+L   +LW ESGRY++YG++++ L DR+ +  + GPTHEE  T + R 
Sbjct: 61  FEKINAVEMLMPSLLPRELWEESGRYETYGEDLMTLQDRHGRDYLLGPTHEEAFTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ KFRDE RPR G++R REF+MKDAYSF  + E    +Y     +
Sbjct: 121 EITSYKRLPLSLYQIQTKFRDEKRPRSGLLRGREFIMKDAYSFHDSFESLDATYQDFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL    +  ++G +GG  S EF+ L+D GE  +  S    D+    E     
Sbjct: 181 YTRIFERCGLDFRNIIGDAGAMGGSNSKEFMALSDIGEDTIVYSDS-SDYSANLEMATSF 239

Query: 241 DIISLNSIVEQ 251
            +   +   E+
Sbjct: 240 HMHKKSLENEK 250



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 103/187 (55%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +  +  P+ + V    +GIE+GHIF  GT+YS  M+AT    +G+   V MG Y
Sbjct: 382 IDLRFVQEGELSPDGQGVLKFAKGIEIGHIFKLGTRYSESMNATVLDNNGRSIPVVMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A+ E     +G+ WP  +AP+++ LI +        +   ++Y  L   G 
Sbjct: 442 GIGVSRLLSAITEQQSSEEGLNWPRHLAPYELHLIPVNMKADDQVNLSNELYTSLQNAGF 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  DD  E++G +F  +DL+G P+++ VG K   ++ VE+K R TG   ++  EE+I+ 
Sbjct: 502 SVLLDDRNERVGVKFKDSDLIGMPIRITVGKK-AQENIVELKLRKTGEALEVRTEELIDT 560

Query: 438 ASHRFSN 444
            +   S+
Sbjct: 561 LNILLSS 567


>gi|289705162|ref|ZP_06501565.1| proline--tRNA ligase [Micrococcus luteus SK58]
 gi|289558106|gb|EFD51394.1| proline--tRNA ligase [Micrococcus luteus SK58]
          Length = 608

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 102/239 (42%), Positives = 142/239 (59%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P +AE+ASH+L++R G I + + GIYSWLPLG K L  V  I+REE 
Sbjct: 4   RMSTLFLRTLRDDPAEAEVASHRLLVRAGYIRRAAPGIYSWLPLGLKVLAQVERIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  +GR+D YG  + RL DR     +  PTHEE+ T + +  
Sbjct: 64  DAIGAQEVHFPALLPREPYEATGRWDEYGDGLFRLQDRRGNDYLLAPTHEEMFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF +   G   +Y     +Y
Sbjct: 124 YSSYKDLPAYLYQIQTKYRDEARPRAGLLRGREFIMKDSYSFTVDDAGLDAAYEAHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           LRIF RLGL+ +P+RA SG +GG  S EF+   + GE     S       + +  T   
Sbjct: 184 LRIFDRLGLEVVPVRATSGAMGGSRSEEFLHPTEVGEDTFVESDGGYRANVEAVTTVAP 242



 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 3/176 (1%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 + RG+E+GHIF  G KY+  +        GK   V MGSYGIG  R VAA+ E 
Sbjct: 435 GSGPLHTRRGMEMGHIFQLGRKYAEALDLKVLDVHGKQVVVTMGSYGIGITRAVAAIAER 494

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
            HD KG+ WP +VAP  +  + +    +    A E + A L   G  V  DD      G 
Sbjct: 495 YHDDKGLAWPRAVAPADVH-VVVATKGEDGLAAAETLAAGLEAEGLTVLVDDRPKVSPGV 553

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +F  A+L+G P  V+VG + ++D ++E+K R TG    + ++  +        + R
Sbjct: 554 KFKDAELIGVPTAVVVG-RGLADGELELKDRATGEARPVPVDGAVAAVLAEVRDGR 608


>gi|237785730|ref|YP_002906435.1| prolyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758642|gb|ACR17892.1| Prolyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 594

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 103/239 (43%), Positives = 143/239 (59%), Gaps = 1/239 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ SHKL++R G I + + G+YSWLPLG K L N+  I+REE 
Sbjct: 8   RMSSLFVRTLREDPADAEVPSHKLLVRAGFIRRIAPGVYSWLPLGLKVLRNIERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   D +  +GR+  YG  + RL DR     + GPTHEE+ T+  +  
Sbjct: 68  DGIGAQEIELPALLPRDAYEVTGRWTEYGDALFRLKDRKKGDYLLGPTHEEIFTETVKGE 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+M D+YSFD+  EG + SY K   +Y
Sbjct: 128 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMCDSYSFDMKDEGLEESYQKHRAAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            R+F+RLGL      A SG +GG  S EF+ ++  GE   F +    D+    E     
Sbjct: 188 QRMFNRLGLDYAICAATSGAMGGSASEEFLAVSPVGE-DTFVTSTSSDYAANVEAVVTP 245



 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 5/189 (2%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    K  D  P+     +  +GIE+GHIF  G KY+          +GK     MG
Sbjct: 407 GTIEAAEVKEGDPAPDGTGTLLLKQGIEIGHIFQLGRKYTNAFELDVLDENGKRSRPTMG 466

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R+VA V E  HD KG+ WP SVAPF + L+     D    +A   +   LS  
Sbjct: 467 SYGVGVSRLVAVVAEQYHDDKGLKWPVSVAPFPVHLVVAN-KDAEAAEAASTLAEELSNR 525

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G D+ +DD      G +F  ++LLG P  V++G +   + K+E++ RL    E + +++ 
Sbjct: 526 GLDILFDDRPKVSPGVKFKDSELLGMPYVVVLG-RAFKEGKIEVRDRLADSVETVPVDDA 584

Query: 435 INYASHRFS 443
             + +    
Sbjct: 585 AEHIARLVK 593


>gi|170016922|ref|YP_001727841.1| threonyl-tRNA synthetase [Leuconostoc citreum KM20]
 gi|238688955|sp|B1MXZ5|SYT_LEUCK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169803779|gb|ACA82397.1| Threonyl-tRNA synthetase [Leuconostoc citreum KM20]
          Length = 653

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 146/445 (32%), Gaps = 36/445 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
              +   RD       + L      +   G+  WLP G      V   I +++   G   
Sbjct: 238 RREEAKERDHRTIGRDMDLF-FTSQEVGSGLPVWLPNGATIRRQVERYIIDKELANGYQH 296

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRN 127
           +  P L + +L+  SG +D Y ++M    D  +       P +      +F    +SYR 
Sbjct: 297 VYTPVLSNLNLYKTSGHWDHYREDMFPPMDMGEGEFLELRPMNCPSHIMVFNHKPRSYRE 356

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP    ++ +  R E       +     +  +     + PE  +  +  +    + ++  
Sbjct: 357 LPIRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVEPEKLEEEFKSILTMMMGVYRD 416

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS-ENTDFDDIISLN 246
             +     R                  D   T+ +   D M     +      DD+    
Sbjct: 417 FNITDYRFRLS--------------YRDPENTEKYFDDDDMWEKSQAQLKRAMDDLKLDY 462

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV  +    +L   + +S   ++    F    ++    + T+ GAD
Sbjct: 463 YEAEGEAAFYGPKLDVQTKT---ALGSEETMSTIQLD----FLLPERF----NLTYIGAD 511

Query: 307 GKDHYV--QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           G+D++    +    +G M    A +   + G    W   ++P ++ +I +        D 
Sbjct: 512 GQDNHRPVMLHRGIVGTMERFTAYLIEMYKGAFPTW---LSPLQVQIIPVNLG--AHGDY 566

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              I A+L   G     +    ++G     A     P  +++G   V    V ++     
Sbjct: 567 ANDIQAQLQAAGLRAHVETKDAKMGYLIREAQTNKIPYTLVLGDSEVDGQTVTVRKYGEE 626

Query: 425 IREDMSLEEVINYASHRFSNN-RPV 448
               M   +  +      +N  RPV
Sbjct: 627 KTRTMRFADFQSEILADVANYSRPV 651


>gi|188588550|ref|YP_001919768.1| threonyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|238689641|sp|B2UYW3|SYT_CLOBA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188498831|gb|ACD51967.1| threonyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
          Length = 643

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 152/445 (34%), Gaps = 35/445 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I +   RD      +L L T       +G+   +P G K +  +   + +E+ R 
Sbjct: 228 EYLEAIEEAKKRDHNKLGRELKLFTT-DENVGQGLPLLMPKGAKIVQTLQRWVEDEEERR 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA--MIYGPTHEEVMTDIFRSHI 122
           G +    P +  +DL+  SG +D Y   M  L D           P        I+ +  
Sbjct: 287 GYVLTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDEEVFALRPMTCPFQYTIYNAEQ 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  + +    FR+E      G++R R+F         +TPE  +  +  +    
Sbjct: 347 HSYRDLPIRYGETSTLFRNESSGEMHGLIRVRQFT-LADGHLIVTPEQLEEEFKGVLELI 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +   LG            I  D+S+ F         +     +  +    +  T  D 
Sbjct: 406 QYLMKTLG------------IDEDISYRFSKWDPNNTEKYINDPEAWNKTQDTMRTILDH 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       +   A Y    D+    +     +   +    I+           +     +
Sbjct: 454 LKINYVEADDEAAFYGPKLDLQCRNVH---GKEDTLFTVQIDFAL--------AERFDMS 502

Query: 302 FKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +G+     +     IG      A++    +     +P  ++P ++ ++ I      
Sbjct: 503 YIDKNGEKKRPYIIHRSSIGCYERTLAMLI---EKYAGAFPTWLSPVQVKVLPISDK--- 556

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  E +   L   G  +  D   E+IG +   A L   P  ++VG K  ++++V ++ 
Sbjct: 557 YNDYAESVVKSLRNKGVRIEADYRAEKIGYKIREARLERTPYILVVGEKEAANNEVSVRS 616

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       + L+       +  +  
Sbjct: 617 RKNDDEGAIKLDAFTERLLNEIATK 641


>gi|328885400|emb|CCA58639.1| Prolyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 566

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 104/239 (43%), Positives = 146/239 (61%), Gaps = 1/239 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + GI+SWLPLG+K L N+  I+REE 
Sbjct: 8   RMSQLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGIWSWLPLGKKVLSNIERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+++P L   + +  +GR+D YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVTLPALLPREPYEATGRWDEYGAELFRLQDRKGGDYLLGPTHEEIFTLLVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ KFRDE RPR G++R REFLMKD+YSFD   EG   SY     +Y
Sbjct: 128 CSSYKDLPVILYQIQNKFRDEARPRAGILRGREFLMKDSYSFDTEDEGLAQSYALHRQAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            R+F RLGL    + A +G +GG  S EF+  A+ GE   F      DF   +E   ++
Sbjct: 188 QRVFERLGLDYRIVAATAGAMGGSKSEEFLAPAEAGE-DTFADCPNCDFAANTEAISYE 245



 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 90/174 (51%), Gaps = 6/174 (3%)

Query: 269 DSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+        R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R VA
Sbjct: 395 DPCPKCGTGLKLDRAIEIGHIFQLGRKYADALKLDVLGQNGKPVRVTMGSYGIGVSRAVA 454

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-G 385
           A+ E + D KG+ WP  VAP  +    + A   +  +   ++  +LS  G  V  DD  G
Sbjct: 455 ALAEQTADEKGLCWPAEVAPADVH--VVAAGKALQTELALEVSDKLSAAGLRVLVDDRAG 512

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              G +F  A+L+G P  ++ G +   +  VE+K R TG RE++++EE +   +
Sbjct: 513 VSPGVKFTDAELMGVPKILVAGRRS-GEGIVELKDRRTGDREELTVEEALTRLT 565


>gi|71984184|ref|NP_001022033.1| Threonyl tRNA Synthetase family member (trs-1) [Caenorhabditis
           elegans]
 gi|1711653|sp|P52709|SYTC_CAEEL RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|3875006|emb|CAA93762.1| C. elegans protein C47D12.6a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 725

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 148/433 (34%), Gaps = 43/433 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     HQ S G   W P G    + +   IR++  R G  E+ 
Sbjct: 315 EEAAKRDHRKLGKEHDLF--FFHQLSPGSAFWYPKGAHIYNKLVDFIRKQYRRRGFTEVI 372

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +  LW  SG +  Y ++M +  +   +     P +      +F     +Y  LPF
Sbjct: 373 TPNMYNKKLWETSGHWQHYSEDMFK-IEVEKEEFGLKPMNCPGHCLMFGHMPHTYNELPF 431

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F    +  R+E+     G+ R R F   DA+ F    + S+    +        + ++ 
Sbjct: 432 RFADFGVLHRNEMSGALTGLTRVRRFQQDDAHIFCRQDQISEE-IKQCLDFLEYAYEKVF 490

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P G   + E                   D          +       + 
Sbjct: 491 GFTFKLNLSTRPEGFLGNIE-----------------TWDKAEADLTNALNASGRKWVLN 533

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L  N + +   ++    F    ++      ++    G+ 
Sbjct: 534 PGDGAFYGPKIDI---TIQDALKRNFQCATIQLD----FQLPNQFD----LSYFDEKGEK 582

Query: 310 HYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               M    +     R+ A + ES                           +  RD    
Sbjct: 583 QRPVMIHRAVLGSVERMTAILTESYGGKWPFWLSPRQCKIITV-------HESVRDYAND 635

Query: 368 IYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +  ++ + G ++ +++  G+ +  Q   A L  F   +++G+K   +  V ++ R   +R
Sbjct: 636 VKKQIFEAGFEIEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTRDNAVR 695

Query: 427 EDMSLEEVINYAS 439
            +++L+++I+   
Sbjct: 696 GEVALDKLISKFR 708


>gi|300087319|ref|YP_003757841.1| prolyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527052|gb|ADJ25520.1| prolyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 573

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 106/272 (38%), Positives = 155/272 (56%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +E P +AE  SH+L+LR GMI Q + G+YS+LP   +    +  IIR+E
Sbjct: 1   MRLSQLFGKTQREIPGEAETISHRLLLRAGMIAQLTAGVYSYLPPAWRTSRKIMDIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+++P LQ  +LW +SGR  ++G  + +L DR +  +  GPTHEEV++D+   
Sbjct: 61  MDAAGCQEITMPVLQPIELWQKSGRGAAFGDNLFQLTDRKEHTLALGPTHEEVVSDLASR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SYR+LP   YQIQ K RDE RPR G++R REF+MKD YSFD    G + SY +M  +
Sbjct: 121 YIQSYRDLPQRLYQIQTKLRDEPRPRGGLIRVREFIMKDMYSFDADEAGLEESYQRMVQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I+ R GLK++ + A+SG IGG  SHEF+VLA++GE +V             +     
Sbjct: 181 YKNIYRRCGLKAMAIEADSGAIGGKASHEFMVLAESGEDEVIFCAGCGYAANKEKAVFNK 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                 + +            + +   F  LP
Sbjct: 241 GKTEPEAPLPTEEVATPGREAIEDVADFLGLP 272



 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 65/188 (34%), Positives = 99/188 (52%), Gaps = 2/188 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T+D+ +  +            + RGIEVGH+F  GT  +    A +  A+G      MG 
Sbjct: 377 TTDIASAAVGAKCARCGGTLDATRGIEVGHVFKLGTFLAETFGAVYTDAEGNQKPCIMGC 436

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R++AA IE +HD KGIIWP  +AP+++ L  +   ++  R A EK+Y  L+  G
Sbjct: 437 YGIGIGRLLAAAIEQNHDDKGIIWPMPIAPWQVHLTGLGLENEPVRAAAEKLYGELTSAG 496

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V +DD  E  G +F  ADLLG PL++ +  + +    VE+K R     E +  +EV+ 
Sbjct: 497 IEVLYDDRPESPGVKFNDADLLGMPLRLTISPRSMDKGSVEVKQRAEKAFELVPADEVVE 556

Query: 437 YASHRFSN 444
                 S+
Sbjct: 557 VTRKLVSD 564


>gi|294631730|ref|ZP_06710290.1| prolyl-tRNA synthetase [Streptomyces sp. e14]
 gi|292835063|gb|EFF93412.1| prolyl-tRNA synthetase [Streptomyces sp. e14]
          Length = 567

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 103/239 (43%), Positives = 144/239 (60%), Gaps = 1/239 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + G++SWLPLG++ L NV  I+REE 
Sbjct: 8   RMSQLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGVWSWLPLGRRVLANVERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR+D YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVLLPALLPKEPYEATGRWDEYGGELFRLKDRKGGDYLLGPTHEEIFTLLVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REFLMKD+YSFD   EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQSKYRDEARPRAGILRGREFLMKDSYSFDTADEGLAESYALHRQAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            RIF RLGL      A +G +GG  S EF+  A+ GE   F      DF   +E   ++
Sbjct: 188 QRIFERLGLDYRICAATAGAMGGSKSEEFLAPAEAGE-DTFADCPNCDFAANTEAITYE 245



 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 6/173 (3%)

Query: 270 SLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             P+        R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R VAA
Sbjct: 397 PCPKCGTGLKLDRAIEIGHIFQLGRKYTDALKLDVLGQNGKPVRVTMGSYGIGVSRAVAA 456

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GE 386
           + E   D  G++WP  VAP  +    + A   +  +    +  +L+  G  V  DD  G 
Sbjct: 457 LAEQHADEHGLVWPAEVAPADVH--VVAAGKALQTEVALDVSQKLAAAGVRVLVDDRAGV 514

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             G +F  A+L+G P  ++ G +   +  +E+K+R TG RE++++EE +   +
Sbjct: 515 SPGVKFTDAELIGVPQILVAGRR-AGEGVLELKNRRTGEREELTVEEALTRLT 566


>gi|194014474|ref|ZP_03053091.1| prolyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194013500|gb|EDW23065.1| prolyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 565

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 159/231 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DAE  SH+L++R G I Q++ GIY +LPL  K + ++ +I+R+E
Sbjct: 1   MRQSLTFIPTLREVPADAEAKSHQLLVRAGFIRQNTSGIYHYLPLAHKVIQHIQSIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA E+ +P LQ A++W ESGR+ +YG E++R+ DR+ +    GPTHEEV+T + RS
Sbjct: 61  MEKAGAAELLMPVLQQAEMWQESGRWYTYGPELMRMKDRHGREFALGPTHEEVITSLVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  +PE    +YNKMF +
Sbjct: 121 EVKSYKKLPLTLYQIQSKFRDEQRPRFGLLRGREFIMKDAYSFHSSPESLDDTYNKMFTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           Y  +F ++GL   P+ A+SG +GG  +HEF+ L++ GE  +  S       
Sbjct: 181 YSNVFSKVGLNFRPVIADSGAMGGKDTHEFMALSEVGEDTIAYSDTSSYAA 231



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/182 (35%), Positives = 108/182 (59%), Gaps = 3/182 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   +  D  P+ +      +GIEVG +F  GT+YS  M AT+   +G+   + MG YG
Sbjct: 384 DLRLIQEGDVSPDGEGTIQFAKGIEVGQVFKLGTRYSESMDATYLDENGRAQPMIMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R ++A++E  HD KGIIWP++VAP+ + L+ +   +   ++  E +Y RL   G D
Sbjct: 444 IGISRTLSAIVEQHHDEKGIIWPEAVAPYDLHLLALNMKNDAQKELAETLYERLEDEGFD 503

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V +DD  E+ G +FA +DL+G P+++  G +   +  VE+K R +G   ++S++E+I++ 
Sbjct: 504 VLFDDRQERAGVKFADSDLIGLPIRISCGKRS-EEGIVEVKFRKSGESHEVSVDELISFI 562

Query: 439 SH 440
             
Sbjct: 563 RQ 564


>gi|51598972|ref|YP_073160.1| threonyl-tRNA synthetase [Borrelia garinii PBi]
 gi|73919774|sp|Q660F3|SYT_BORGA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|51573543|gb|AAU07568.1| threonyl-tRNA synthetase [Borrelia garinii PBi]
          Length = 582

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 156/444 (35%), Gaps = 39/444 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L + +E   RD      +L L +    +   G+  + P G K    +    REE ++
Sbjct: 172 RSYLNLREEIKKRDHRKLGKELDLFSIH-EEIGPGLIFFHPNGAKIRALIEDFWREEHSK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  + Y   M    + +       P +      I+ +   
Sbjct: 231 NGYDILFTPHVGKSWLWQTSGHLNFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYNTGKH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G+MR+R F   DA+      +       ++    +
Sbjct: 291 SYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHIICTHSQVVDE-IKEVLRFAI 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G  S+     + P                  +   +    +  +        D 
Sbjct: 350 YMWSKFGFNSLKAYLSTKP-----------------DKSVGNNSDWEMSLKVLKEALSDF 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I +   A Y    D+   K+ DSL    ++S    +    F    ++++    T+
Sbjct: 393 EVPYEIDKGGGAFYGPKIDL---KIVDSLEREWQMSTIQFD----FNLPERFNM----TY 441

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG +     +    +G++     ++   + G   +W   V    I + NI       
Sbjct: 442 TSEDGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLWLSHVQAVIIPVNNI------V 495

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   K++ +    G  +  D+   ++ ++         P   I+G +   + ++ I+ R
Sbjct: 496 EDYTIKVFNKFKNAGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREAIEERISIRTR 555

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                  + L+E +     +  + 
Sbjct: 556 TNEQINGIELDEALKLILLKVRDK 579


>gi|227908819|ref|NP_758514.2| probable threonyl-tRNA synthetase 2, cytoplasmic [Mus musculus]
 gi|81896660|sp|Q8BLY2|SYTC2_MOUSE RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           AltName: Full=Threonyl-tRNA synthetase-like protein 2
 gi|26334063|dbj|BAC30749.1| unnamed protein product [Mus musculus]
          Length = 790

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 154/448 (34%), Gaps = 42/448 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 373 KMMKDWEKFQEEAKSRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNALMDFIREE 430

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y   M    D         P +      +F  
Sbjct: 431 YHKRNFTEVLSPNMYNSKLWETSGHWQHYSNNMFTF-DVEKDTFALKPMNCPGHCLMFAH 489

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F +  +  +        
Sbjct: 490 RPRSWREMPVRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCMVEQ-IEEEIKGCLH 548

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 549 FLQSVYSTFGFSFQLN-LSTRPEHFLGEIE-----------------IWDEAERQLQNSL 590

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      I     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 591 VEFGKPWKINPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 643

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K+  V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 644 SK--DGDDKNRPVIIHRAILGSVERMIAILS---ENYGGKWPLWLSPRQVMVIPVGP--- 695

Query: 360 VCRDACEKIYARLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            C +   ++     + G   DV  DD    +  +   A L  +   ++VG K   ++ V 
Sbjct: 696 ACENYALQVSKECFEEGFMADVDLDDS-CTLNKKIRNAQLAQYNFILVVGEKEKINNAVN 754

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R   I  ++S+  VI    +   + 
Sbjct: 755 VRTRDNKIHGEISIASVIEKLKNLKKSR 782


>gi|319441431|ref|ZP_07990587.1| prolyl-tRNA synthetase [Corynebacterium variabile DSM 44702]
          Length = 585

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 120/385 (31%), Positives = 176/385 (45%), Gaps = 23/385 (5%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S +FL  L+E+P DAE+ SHKL++R G I + + G+YSWLPLG + L N+ AI+R E 
Sbjct: 4   RMSSFFLRTLREDPADAEVPSHKLLVRAGYIRRVTPGVYSWLPLGLRVLHNIEAIVRREM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+ +P L   + +  S R+  YG  +LRL DR     + GPTHEE+ TD+ +  
Sbjct: 64  NAIGAQEIRLPALLPREPYERSNRWTEYGDSLLRLKDRKGADYLLGPTHEEMFTDLVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSF +   G   +Y    V+Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFIMKDSYSFTMDDAGLDEAYQAHRVAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF  LG++     A SG +GG  S EF+ ++ +GE   F      D+    E      
Sbjct: 184 QRIFDSLGVEYAICAATSGAMGGSASEEFLAVSASGE-DTFVRATDGDYAANVEAVITPA 242

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                        P A   +  +    D+L +  R     ++ G      T     +   
Sbjct: 243 PAERPID----GQPEAKVYETPDATTMDTLLDWARSEGLEVD-GRPAEL-TDTLKCLVVK 296

Query: 302 FKGADGKDHYVQMGSYG--IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                G+     +   G     M+ + A +E +          +  PF +          
Sbjct: 297 ITEPGGEPELTGVLLPGDREADMKRLEASLEPAVVELASDEDFAKNPFLVKGYVGPKG-- 354

Query: 360 VCRDACEKIYARLSKVGCDVFWDDM 384
                       L+  G  V  D  
Sbjct: 355 ------------LADNGIKVLADPR 367



 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 5/187 (2%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +    +  D+ PE        RGIE+GHIF  G KY+          +GK     MG
Sbjct: 398 GFIEAAEIREGDAAPEGMGTLTLERGIEIGHIFQLGRKYTEAFDVKILDENGKRSVPTMG 457

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R++A + E  HD KG+ WP +VAPF +  + I   D    +A   +   L   
Sbjct: 458 SYGLGVSRLIAVLAEQMHDDKGLRWPTTVAPFDVH-VVIANKDAAAGEAAGSLAGELDAA 516

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +D+      G +F  A+LLG PL VIVG +  ++  VE+++RLTG   +++  + 
Sbjct: 517 GLEVIFDERPKVGPGVKFKDAELLGMPLVVIVG-RGFAEGTVELRNRLTGETTNIAYGDA 575

Query: 435 INYASHR 441
           +      
Sbjct: 576 VATIREL 582


>gi|189485415|ref|YP_001956356.1| prolyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|226701354|sp|B1H063|SYP_UNCTG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|170287374|dbj|BAG13895.1| prolyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 569

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 118/264 (44%), Positives = 153/264 (57%), Gaps = 2/264 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK  +P L+E P DA+I S KLM+R+GMI + + G Y  LPLG K L  V  IIR+E
Sbjct: 1   MFFSKMLIPTLKEAPSDADIVSVKLMVRSGMIRKLASGFYELLPLGLKVLRKVENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+  P +    LW+E+ R+++YGKE+ +L DR D      PT EEV+TD+ R 
Sbjct: 61  MNSAGGQEVIFPLVFPKALWLETDRWNAYGKELFKLKDRKDAEFCLAPTAEEVVTDLIRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ   KFRDE+RPRFGVMRSREFLMKDAYSF       +  Y  MF +
Sbjct: 121 DIKSYKQLPVMLYQFGTKFRDEIRPRFGVMRSREFLMKDAYSFHADEADLEKYYKTMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDF 239
           Y  I  + G +   + A SG IGG  SHEF+VL DTGE ++ +CS  +      +E    
Sbjct: 181 YTNICIKCGFQFRAVEAASGVIGGSFSHEFMVLTDTGEEEMTWCSCGYGANSAKTECLKI 240

Query: 240 DDIISLNSIVEQ-WTAPYAATSDV 262
           +         E+ +T    A  DV
Sbjct: 241 EQSKEEPLPSEEIFTTDVCAIEDV 264



 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 86/358 (24%), Positives = 147/358 (41%), Gaps = 13/358 (3%)

Query: 88  SYGKEMLRLADRNDKAMI---YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           S+  E + L D  ++ M     G       T+  +        LP            E  
Sbjct: 205 SFSHEFMVLTDTGEEEMTWCSCGYGANSAKTECLKIEQSKEEPLPSEEIFTTDVCAIEDV 264

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
            +   +  ++F+    Y  D  P       +                 +    ++     
Sbjct: 265 AKLLNLSPKKFIKTMIYIADKKPVAVLVRGDYEINEIKLQTLLGADGMLLADEQTVISVT 324

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +    F   A     ++       +        +  D    N   ++        +D+  
Sbjct: 325 NAPIGFAGPAGLKNIKIIADLSVAELSNALTGANKKDYHLKNVNFKRDYNAD-IVADIRK 383

Query: 265 EKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            K  D+ P  K      +RGIE+GH F  G KYS  M+A++  A+GK+ ++ MG YGIG 
Sbjct: 384 VKRGDTCPRCKKEELKFSRGIEIGHTFKLGDKYSKSMNASYLDANGKEKFIIMGCYGIGV 443

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++AA+IE SHD  GIIW +++APF++ ++ +   D+  ++  EKIY  LS  G DV  
Sbjct: 444 TRILAAIIEQSHDDDGIIWTNNIAPFEVVIVPLNYADEKTKETTEKIYKELSSKGLDVLI 503

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           DD  E+ G +F  ADL+G P ++ +  K +++  VE+K R  G       ++ +    
Sbjct: 504 DDRDERAGIKFKDADLIGIPYRITISEKNLANGNVELKARRDGK------DDAVRLFK 555


>gi|86607055|ref|YP_475818.1| threonyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
 gi|86555597|gb|ABD00555.1| threonyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 603

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 68/444 (15%), Positives = 142/444 (31%), Gaps = 42/444 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   L+E  R D      +L L      +   G+  W P G      +   +++EQ + G
Sbjct: 192 YKRRLEEAKRRDHRKLGKELGLFI-FADEVGPGLPLWTPKGTTLRWVLEDFLKQEQLKRG 250

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFR 119
            + +  P +   DL+  SG +  Y ++M  +   +++A       +  P +      I++
Sbjct: 251 YLPVVTPHIARVDLFKISGHWQKYREDMFPMMAESEEARAAEQGFVMKPMNCPFHIQIYK 310

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           S ++SYR+LP  + +    +R E     G +        D     + P+  +  + K+  
Sbjct: 311 SELRSYRDLPLRYAEFGTVYRYEQSGELGGLTRVRGFTVDDAHLFVRPDQLEEEFLKVVD 370

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F +L LK    R                  D    +   S +  D    +     
Sbjct: 371 LILVVFDKLKLKDFRARLS--------------FRDPKSDKYLGSPEEWDMAENAIRRAV 416

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           + +   +       A Y    D       D+L    ++    ++  +   F         
Sbjct: 417 EKLSMPHFEGIGEAAFYGPKLDFI---FRDALDREWQLGTVQVDYQNPQRFD-------- 465

Query: 300 ATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             +   DG      M          R++  +IE                           
Sbjct: 466 LYYVAEDGSRQRPVMIHRAPFGSLERLIGILIEEYAGDFPFWLAPEQVRILPV------- 518

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                    ++  +L + G  V  D   +++  +   A+    P  +IVG K  +   V 
Sbjct: 519 SDQYLGYATQVRDQLREQGIRVHIDADSDRLPKKIRNAEKAKVPFMLIVGEKEQATGTVS 578

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++ R       +++ + ++     
Sbjct: 579 VRQRHGKDLGSLTVADFLDQVQAL 602


>gi|19113156|ref|NP_596364.1| cytoplasmic threonine-tRNA ligase Trs1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|3183175|sp|P87144|SYTC_SCHPO RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2104451|emb|CAB08788.1| cytoplasmic threonine-tRNA ligase Trs1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 703

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 153/437 (35%), Gaps = 45/437 (10%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  K FL   +   RD         L     ++ S G   +LP G +  + +   +R +
Sbjct: 276 MQEYKTFLA--EAAKRDHRKIGRDQELF--FFNEISPGSCFFLPHGARIYNTLLKYMRYQ 331

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+  P + + +LW  SG +++Y + M    D   +     P +      +F+S
Sbjct: 332 YSKRGYQEVITPNMYNVNLWKTSGHWNNYSENMFSF-DIEKEKYALKPMNCPGHCVMFKS 390

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR+LP+      +  R+E      G+ R R F   DA+ F    +         F 
Sbjct: 391 RDRSYRDLPWRVADFGVLHRNEFSGALSGLTRVRRFQQDDAHIFCTPDQVRSE-IEGCFD 449

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G     +   + P                E +        D          
Sbjct: 450 FLKEVYGTFGFTF-HLELSTRP----------------EEKYLGDLATWDKAEAQLKAAL 492

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D       +     A Y    D+    +FD+L    + +   ++    F    ++ L   
Sbjct: 493 DASGYKWELNAGDGAFYGPKIDI---TVFDALKRQHQCATIQLD----FQLPERFQLEFH 545

Query: 300 A--------TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           A             +     V +    +G++  + A++    +     WP  ++P ++ +
Sbjct: 546 APASAEEAKESGNNNKYTRPVMVHRAILGSLERMIAILT---EHYAGKWPFWMSPRQVCI 602

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I +        +  +K++  LS+    V  D     +  +   A L  +    +VG++  
Sbjct: 603 IPV---SAAAYNYADKVHNILSEADIFVDTDKSDNTLPKKIRNAQLAQYNFIFVVGAEEE 659

Query: 412 SDSKVEIKHRLTGIRED 428
           S + V +++R    ++ 
Sbjct: 660 STNSVNVRNRDDPKKQS 676


>gi|302682704|ref|XP_003031033.1| hypothetical protein SCHCODRAFT_77271 [Schizophyllum commune H4-8]
 gi|300104725|gb|EFI96130.1| hypothetical protein SCHCODRAFT_77271 [Schizophyllum commune H4-8]
          Length = 728

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 68/440 (15%), Positives = 140/440 (31%), Gaps = 44/440 (10%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +  L     H  S G   +LP G +  + +  ++R E  + G  E+  
Sbjct: 318 EAAKRDHRKIGREQELF--FFHDLSPGSCFFLPHGTRIYNTLIELMRSEYFKRGYQEVIS 375

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + +A LW  SG +++Y  +M  L D         P +      IF S  +SYR LP  
Sbjct: 376 PNMYNAKLWETSGHWENYKDDMFTL-DIEKDNWALKPMNCPGHCLIFDSRDRSYRELPIR 434

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             +  +  R+E      G+ R R F+  D + F + P   +     +F     ++   G 
Sbjct: 435 MAEFGIIHRNEASGALSGLTRVRRFVQDDTHIFCM-PSQVEAEMAGLFDFMQHVYGIFG- 492

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD-IISLNSIV 249
                             EF +   T   +     +  +          +        + 
Sbjct: 493 -----------------FEFHLELSTRPEKYLGEVETWNAAEDQLKQALEKYYPGKWELN 535

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    +++L   +     + + 
Sbjct: 536 PGDGAFYGPKIDI---TIRDALKRAYQCATIQLD----FQLPQRFNLKYRSN--NEEVQR 586

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             +   +      R VA   E                        K       +   ++ 
Sbjct: 587 PIIIHRAILGSIERFVAIATEHFAGKWPFWLSPRQVLVIPVAAPYK-------EYASEVA 639

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIRED 428
             LSK       D+    +  +    ++  +   ++VG   +    V +++R   G +  
Sbjct: 640 ETLSKANLYAEVDNSDNTLQKKIRNGEIAQYNFILVVGETELESKSVNVRNRDDVGTKAR 699

Query: 429 ---MSLEEVINYASHRFSNN 445
              + L ++++       + 
Sbjct: 700 SATIPLADIVDKLVKLKESR 719


>gi|170748342|ref|YP_001754602.1| threonyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
 gi|170654864|gb|ACB23919.1| threonyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
          Length = 675

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 137/443 (30%), Gaps = 40/443 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      ++ L      +   G+  W   G      + A +R    R  
Sbjct: 232 YLHRLEEAERRDHRRLGREMDLF--HFQEEGPGVVFWHAKGWTIFQELIAYMRRRL-RGD 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG +  Y + M       +     +     P +      IF+ 
Sbjct: 289 YAEVNAPQILDKALWETSGHWGWYRENMFAAQSAGEEAEDKRWFALKPMNCPGHVQIFKH 348

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + +         
Sbjct: 349 GLKSYRDLPLRMAEFGIVHRYEPSGAMHGLMRVRGFTQDDAHVFCTEDQLADECLKIN-D 407

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L  +   G   I ++  + P     S      A+   T+V       +       T  
Sbjct: 408 LILSTYADFGFDQIVVKLSTRPEKRVGSDALWDHAEDVMTRVLA--QIEEQSGGRIRTAV 465

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +             A Y    +     L D++  + +     ++      FG        
Sbjct: 466 N---------PGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVDFNLPERFG-------- 505

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +  ADG       +     G+M     ++     G   +W   V     ++       
Sbjct: 506 AFYIDADGARKPPVMVHRAICGSMERFTGILIEHFAGHFPLWLAPVQVVVATITG----- 560

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                    +   L + G  V  D   E+I  +     L   P+ + +G +   +  V I
Sbjct: 561 -EADAYARDVIRTLERAGLRVEADLRNEKINYKVREHSLAKVPVLLALGRREAEERTVSI 619

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +     + L E +      
Sbjct: 620 RRLGSQQTRTLPLTEAVAAFVEE 642


>gi|71984192|ref|NP_001022034.1| Threonyl tRNA Synthetase family member (trs-1) [Caenorhabditis
           elegans]
 gi|30145813|emb|CAD89723.1| C. elegans protein C47D12.6b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 684

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 148/433 (34%), Gaps = 43/433 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     HQ S G   W P G    + +   IR++  R G  E+ 
Sbjct: 274 EEAAKRDHRKLGKEHDLF--FFHQLSPGSAFWYPKGAHIYNKLVDFIRKQYRRRGFTEVI 331

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +  LW  SG +  Y ++M +  +   +     P +      +F     +Y  LPF
Sbjct: 332 TPNMYNKKLWETSGHWQHYSEDMFK-IEVEKEEFGLKPMNCPGHCLMFGHMPHTYNELPF 390

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F    +  R+E+     G+ R R F   DA+ F    + S+    +        + ++ 
Sbjct: 391 RFADFGVLHRNEMSGALTGLTRVRRFQQDDAHIFCRQDQISEE-IKQCLDFLEYAYEKVF 449

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P G   + E                   D          +       + 
Sbjct: 450 GFTFKLNLSTRPEGFLGNIE-----------------TWDKAEADLTNALNASGRKWVLN 492

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L  N + +   ++    F    ++      ++    G+ 
Sbjct: 493 PGDGAFYGPKIDI---TIQDALKRNFQCATIQLD----FQLPNQFD----LSYFDEKGEK 541

Query: 310 HYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               M    +     R+ A + ES                           +  RD    
Sbjct: 542 QRPVMIHRAVLGSVERMTAILTESYGGKWPFWLSPRQCKIITV-------HESVRDYAND 594

Query: 368 IYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +  ++ + G ++ +++  G+ +  Q   A L  F   +++G+K   +  V ++ R   +R
Sbjct: 595 VKKQIFEAGFEIEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTRDNAVR 654

Query: 427 EDMSLEEVINYAS 439
            +++L+++I+   
Sbjct: 655 GEVALDKLISKFR 667


>gi|241894947|ref|ZP_04782243.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Weissella
           paramesenteroides ATCC 33313]
 gi|241871665|gb|EER75416.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Weissella
           paramesenteroides ATCC 33313]
          Length = 699

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 153/436 (35%), Gaps = 32/436 (7%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD         L      +   G+  W+P G      +   I + + + G   +  
Sbjct: 280 EAKERDHRKIGADQDLF-FTSQEVGSGLAVWMPNGAAIRRTLERYIVDREVQDGYQHVYT 338

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P L + +L+ +SG +D Y  +M    D  D       P +      +++ H +SYR+LPF
Sbjct: 339 PVLSNLNLYKQSGHWDHYRDDMFPPMDMGDGEFLELRPMNCPSHIMVYKHHQRSYRDLPF 398

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              ++ +  R E      G+ R RE  + D ++F +  +         F   L++   + 
Sbjct: 399 RVAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVMLDQIEDE-----FKKILQLMVDVY 453

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                          D              + F   +  +          DD+       
Sbjct: 454 KDFDIT---------DYRFRLSYRDPKNTEKYFDDDEMWEKAQRMLKGAMDDMDLEYFEA 504

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E   A Y    DV   ++  +L   + +S   ++    F    ++      T+ G+DG+ 
Sbjct: 505 EGEAAFYGPKLDV---QIKTALGGEETLSTIQLD----FLLPERFD----VTYVGSDGEL 553

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           H   M     G +  +        +     +P  +AP ++ +I +    +   +  + + 
Sbjct: 554 HRPVMIHR--GIISTMERFTAYLTEMYKGAFPTWLAPHQVRIIPVNR--EAHGEFAQALT 609

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            RL K      +D   E++G     A  L  P  +++G + VS+  V I+   +      
Sbjct: 610 DRLVKQDIRADYDGRNEKLGYLIRNAQSLKIPYTLVIGDEEVSNDTVTIRRFGSRDTSVK 669

Query: 430 SLEEVINYASHRFSNN 445
           S+++         +N+
Sbjct: 670 SVDQFETDLLADIANH 685


>gi|296089916|emb|CBI39735.3| unnamed protein product [Vitis vinifera]
          Length = 686

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 156/441 (35%), Gaps = 38/441 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  +Y   I +    D  +   K  L     H  S G + +LP G +  + +   I+ + 
Sbjct: 278 RLKEYIARIEEAKKYDHRLLGVKQELF--FCHPLSPGSWFFLPHGGRIYNKLMEFIKAQY 335

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  PT+ +  LW  SG   +Y + M  + +   +     P +      +F   
Sbjct: 336 RERGYHEVFSPTMYNMQLWETSGHAANYKENMF-VFEVEKQEFGLKPMNCPGHCLMFEHR 394

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP       +  R+E      G+ R R F   DA+ F       K     +   
Sbjct: 395 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCR-ESQIKDEVMGVLDF 453

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
               ++  G     ++  + P                  +     +  +    +     +
Sbjct: 454 INYAYNIFGFTYE-LKLSTRP-----------------EKYLGDLETWEKAEAALTEALN 495

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  I E   A Y    D+    + D+L    + +   ++    F   +++ L  SA
Sbjct: 496 QSGKPWEINEGDGAFYGPKIDI---SVSDALNRKFQCATLQLD----FQLPSRFDLSYSA 548

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                  ++  V +    +G++  + A++    +     WP  ++P +  +  +    Q 
Sbjct: 549 E--DEAKRERPVMIHRAILGSVERMFAILL---EHYKGKWPFWLSPRQAIVCPVSEKSQ- 602

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++  ++ + G  V  D    +I  +   A L  +   ++VG +  +  +V ++ 
Sbjct: 603 --PYALQVRDQIHQAGYYVDVDTTDRKIQKKVREAQLAQYNFILVVGEEEANTRQVSVRV 660

Query: 421 RLTGIREDMSLEEVINYASHR 441
           R  G    MS+E +++Y    
Sbjct: 661 RDKGDHSVMSMENLLSYFKSE 681


>gi|332670551|ref|YP_004453559.1| threonyl-tRNA synthetase [Cellulomonas fimi ATCC 484]
 gi|332339589|gb|AEE46172.1| threonyl-tRNA synthetase [Cellulomonas fimi ATCC 484]
          Length = 670

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 67/457 (14%), Positives = 131/457 (28%), Gaps = 49/457 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  + P G      + A  R+     G
Sbjct: 249 YLERVAEAERRDHRRLGSELDLFS-FPDEIGSGLAVFHPKGGLIRMEMEAYSRKRHVEAG 307

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              ++ P +    L+  SG  D Y   M                 R  +     P +  +
Sbjct: 308 YSFVNTPHITKERLFQLSGHLDWYADGMYPPMHLDEELDDEGNVKRQGQNYYLKPMNCPM 367

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              ++RS  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +    
Sbjct: 368 HNLVYRSRGRSYRELPLRLFEFGTVYRYEKSGVVHGMTRARGFTQDDAHIYCTLDQMKDE 427

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              ++    L +    GL    +   +                    +     D  +   
Sbjct: 428 L-TRLLTFVLDLLKDYGLDDFYLELST----------------KNPEKFVGDDDVWERAT 470

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +                   A Y       + +  D++    ++S   ++    F    
Sbjct: 471 ETLREVAQSSGLELVPDPGGAAFYGPKI---SVQAKDAIGRTWQMSTIQLD----FNLP- 522

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +   DG       +     G++    AV+   + G    W   V    + +
Sbjct: 523 ---ELFELEYTAPDGSRQRPVMIHRALFGSIERFFAVLTEHYAGAFPAWLAPVQVLAVPV 579

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                  +      E + A+L   G     D   ++ G +   A     P  +IVG +  
Sbjct: 580 A------EPFEPYLEDVVAQLRAEGIRAEIDRSDDRFGKKIRNASTQKIPFVLIVGGEDA 633

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
               V  ++R       + + E +            V
Sbjct: 634 DAGAVSFRYRDGRQDNGVPVAEAVQRIVTAVRERAQV 670


>gi|78212243|ref|YP_381022.1| prolyl-tRNA synthetase [Synechococcus sp. CC9605]
 gi|114152271|sp|Q3ALR5|SYP_SYNSC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78196702|gb|ABB34467.1| prolyl-tRNA synthetase [Synechococcus sp. CC9605]
          Length = 593

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 114/277 (41%), Positives = 157/277 (56%), Gaps = 6/277 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +AEI SH+L+LR G I +   GIY++LPL  + L  + A++REE
Sbjct: 1   MRVSRLLLVTLRDVPAEAEITSHQLLLRAGYIRRVGSGIYAYLPLMWRVLQKITAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            NR GA E  +P L  A+LW +SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MNRAGAQETLLPQLHPAELWQKSGRWQGYTAGEGIMFHLEDRQGRELGLGPTHEEVITSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  +    + +Y  M
Sbjct: 121 AGELLRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHASEADLRETYGAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y RIF R GL ++P+ A+SG IGG  S EF+V AD GE  +  S D        +  
Sbjct: 181 DQAYRRIFERCGLDAVPVDADSGAIGGAASQEFMVTADAGEDLILISDDGQYAANLEKAV 240

Query: 238 DFDDIISLNSIVEQWTAP---YAATSDVHNEKLFDSL 271
                 S      + + P     +   + + K +D  
Sbjct: 241 SIPSAASPLPDGPEESIPTPGLGSIESLCDTKCWDPS 277



 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 91/187 (48%), Gaps = 4/187 (2%)

Query: 259 TSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           T D+ N +  D      E++    RGIEVGHIF  G KYS  M + F   +GK     MG
Sbjct: 406 TLDLRNARAGDVCQHNLESRLTEKRGIEVGHIFQLGRKYSEAMESGFTNENGKTEPFWMG 465

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+  A +E  HD  GI WP ++APF+  ++     D       E +YA L   
Sbjct: 466 CYGIGVSRLAQAAVEQHHDDSGICWPTAIAPFEAIVVVANIQDDTQGQLGEALYAELQAA 525

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             DV  DD  E+ G +F  ADL+G P +++VG +  S+  VE+  R +     +   E +
Sbjct: 526 DVDVLLDDRKERAGVKFKDADLIGIPWRIVVG-RDASEGIVELVRRSSREVRKLPHAEAV 584

Query: 436 NYASHRF 442
           +      
Sbjct: 585 SCLIKAL 591


>gi|50294994|ref|XP_449908.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49529222|emb|CAG62888.1| unnamed protein product [Candida glabrata]
          Length = 726

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 70/441 (15%), Positives = 159/441 (36%), Gaps = 41/441 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           + + RD      +  L   + ++ S G   WLP G +  + +  ++R E  + G  E+  
Sbjct: 315 EASMRDHRKIGKEQELF--LFNEMSPGSCFWLPHGTRIYNTLVDLLRSEYRKRGYEEVIT 372

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + ++ LW  SG + +Y + M       +      P +      +F++  +SYR LP+ 
Sbjct: 373 PNMYNSKLWETSGHWANYKENMFTFEVEKET-FGLKPMNCPGHCLMFKARERSYRELPWR 431

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                +  R+E      G+ R R F   DA+ F  T +  +     +F            
Sbjct: 432 VADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFC-TQDQIEQEIENIFDFLKF------- 483

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                      + G    EF +   T   +     +  D          +       +  
Sbjct: 484 -----------MYGVFGFEFKMELSTRPEKYVGELETWDAAEKKLENALNKWGGAWELNP 532

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKD 309
              A Y    D+    + D+L    + +   ++    F    ++ L   A      +  +
Sbjct: 533 GDGAFYGPKIDIM---ISDALRRWHQCATIQLD----FQLPQRFELEFKAKDTEESENYE 585

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +     WP  ++P +I ++ +       ++  +++ 
Sbjct: 586 RPVMIHRAILGSVERMTAILT---EHFAGKWPFWLSPRQILVVPVGVK---YQEYAQQVR 639

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE-- 427
            ++   G     D  G  +  +     L+ +    IVG   ++++ V I++R    ++  
Sbjct: 640 DKMHNAGFYADVDLTGNTLQKKVRTGQLMKYNFIFIVGETEMNENSVNIRNRDVMEQQGK 699

Query: 428 --DMSLEEVINYASHRFSNNR 446
              ++++ V+       +  R
Sbjct: 700 NATVNVDIVLEQLQKLKAEKR 720


>gi|73951031|ref|XP_857184.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 3
           [Canis familiaris]
          Length = 711

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 153/447 (34%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 294 KMMKTWEKFQEEAKNRDHRKVGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLMDFIREE 351

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    E+  P + ++ LW  SG +  Y + M    D         P +      +F  
Sbjct: 352 YHRRNFTEVLSPNMFNSKLWETSGHWQHYSENMFTF-DIEKDTFALKPMNCPGHCLMFAH 410

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P       +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 411 RPRSWREMPVRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLQ 469

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  D          
Sbjct: 470 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEVELWDEAEKQLQNSL 511

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 512 VEFGKPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 564

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K + V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 565 SK--DGDDKRNPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP--- 616

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C     ++ +   + G     D D    +  +   A L  +   ++VG K  +++ V +
Sbjct: 617 TCEKYALQVSSAFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKTNNAVNV 676

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   I  ++S+   I+   +   + 
Sbjct: 677 RTRDNKIHGEISVTSAIHKLKNLKKSR 703


>gi|220919170|ref|YP_002494474.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254782880|sp|B8J9M0|SYP_ANAD2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219957024|gb|ACL67408.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 574

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 108/263 (41%), Positives = 148/263 (56%), Gaps = 3/263 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+P L+E P DA++ASHKL++R G I Q   GIY +LPL +++L  V AI+REE 
Sbjct: 5   RYSQAFIPTLKEAPADAQVASHKLLVRAGFIRQLGAGIYDYLPLAKRSLAKVEAIVREEM 64

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E  +P L  A++W ESGR+D  G  M RL DR       G THEE+ T + R  
Sbjct: 65  DAIGGQEFYLPALHPAEIWKESGRWDVMGDNMFRLKDRKGGDYCLGMTHEEIFTAVARDE 124

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR LP  +YQIQ KFRDE RP+ G++R R+F MKDAYSFD+   G   SY     +Y
Sbjct: 125 LRSYRQLPQVWYQIQTKFRDEPRPKSGLLRVRQFTMKDAYSFDVDRAGLDRSYEDQRRAY 184

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF---MDFPIPSENTD 238
            +IF R GL  + ++A SG +GG  S EF+V  D GE  V          +    +    
Sbjct: 185 EKIFTRCGLDFVAVQAHSGSMGGSESSEFMVRTDAGEDLVAACPRCRYAANTETATSRVA 244

Query: 239 FDDIISLNSIVEQWTAPYAATSD 261
            +         E++  P   T +
Sbjct: 245 AEADGPGLGTPEKFATPGVVTIE 267



 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 105/192 (54%), Gaps = 3/192 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A  A  +++   K  +  P         + +E+GHIF  GTKYS  M AT   A+GK   
Sbjct: 381 AHGATLAELRTVKAGEGCPRCDGTLDVFKALEIGHIFKLGTKYSESMKATVLDAEGKQVP 440

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + MGSYGIG  R++AA IE  HD  GI++P ++APF  +++ +   +   R A E++ A 
Sbjct: 441 IVMGSYGIGVERILAAAIELHHDDNGIVFPMAIAPFHATVLTLGP-EPELRKAAEEVVAA 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G +V +DD  E+ G +F  ADLLG P+++ VG K ++   VE K R  G  E + +
Sbjct: 500 LGKEGVEVLFDDRDERAGVKFKDADLLGIPIRIAVGKKGLAAGNVEWKLRKGGAVELVPV 559

Query: 432 EEVINYASHRFS 443
            EV   A+    
Sbjct: 560 GEVARKAAEAVR 571


>gi|330719257|ref|ZP_08313857.1| threonyl-tRNA synthetase [Leuconostoc fallax KCTC 3537]
          Length = 654

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 70/441 (15%), Positives = 141/441 (31%), Gaps = 35/441 (7%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
                +   RD       L L      +   G+  WLP G      V   I +++     
Sbjct: 236 LQRRQEAKERDHRNIGRDLDLF-FTSQEVGSGLPVWLPNGATIRRQVERYIVDKELSNDY 294

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSY 125
           + +  P L + +L+  SG ++ Y ++M    D  D       P +      I++   +SY
Sbjct: 295 LHVYTPILSNLNLYKTSGHWEHYREDMFPPMDMGDGEFLELRPMNCPSHIMIYKHKPRSY 354

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    ++ +  R E       +     +  +     + PE  +  +  +    + ++
Sbjct: 355 RELPMRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVEPEKLEEEFKSILKMMMEVY 414

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIIS 244
               +     R                  D   T  +   D   +       T  DD+  
Sbjct: 415 EDFNITDYRFRLS--------------YRDPKNTAKYFDDDEMWEKSQKQLKTAMDDLGL 460

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    DV  +    +L   + +S   ++    F    ++      ++ G
Sbjct: 461 DYFEAEGEAAFYGPKLDVQTKT---ALGGEETLSTIQLD----FLLPERFD----LSYIG 509

Query: 305 ADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            DG      V +    +G M    A +   + G    W   ++P ++ +I +        
Sbjct: 510 EDGKDNHRPVMLHRGIVGTMERFTAYLIEMYKGAFPTW---LSPLQVQIIPVNLG--AHG 564

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +I  +L   G     +    ++G     A     P  +++G   V+D  V ++   
Sbjct: 565 DYARRIQQQLQVAGLRANVETKDAKMGYLIREAQTKKVPYTLVLGDNEVADETVTVRQYG 624

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +   E +S+           +
Sbjct: 625 SEKTETISIAAFEKLILADVA 645


>gi|296330872|ref|ZP_06873347.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674390|ref|YP_003866062.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151877|gb|EFG92751.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412634|gb|ADM37753.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 564

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 110/225 (48%), Positives = 151/225 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DAE  SH+L+LR G I Q++ G+YS++PL  K + N+  I+REE
Sbjct: 1   MRQSLTLIPTLREVPADAEAKSHQLLLRAGFIRQNTSGVYSYMPLAYKVIQNIQQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P LQ A+ W ESGR+ +YG E++RL DR+ +    G THEEV+T + R 
Sbjct: 61  MEKIDAVEMLMPALQQAETWQESGRWYTYGPELMRLKDRHGREFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  T E    +Y KM+ +
Sbjct: 121 EVKSYKRLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHATEESLDETYQKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R G+   P+ A+SG +GG  +HEF+ L+  GE  +  S 
Sbjct: 181 YSNIFARCGINVRPVIADSGAMGGKDTHEFMALSAIGEDTIAYSD 225



 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/191 (35%), Positives = 110/191 (57%), Gaps = 3/191 (1%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A     +D+   K  D  P+ K       GIEVG +F  GT+YS  M+AT+   +G+  
Sbjct: 375 DAQIKEFADLRFIKEGDPSPDGKGTIRFAEGIEVGQVFKLGTRYSEAMNATYLDENGRAQ 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MG YG+G  R ++A+ E  HD KG+IWP SVAP+ + ++ +   +   R+  EK+YA
Sbjct: 435 PMLMGCYGVGVSRTLSAIAEQHHDDKGLIWPKSVAPYDLHILALNMKNDSQRELAEKLYA 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G +V +DD  E+ G +FA +DL+G P+++ VG +   +  VE+K R TG   ++S
Sbjct: 495 NLKAEGYEVLYDDRAERAGVKFADSDLIGLPIRITVGKR-ADEGIVEVKIRQTGESTEVS 553

Query: 431 LEEVINYASHR 441
           ++E+  + S +
Sbjct: 554 VDELTAFISKQ 564


>gi|86149734|ref|ZP_01067964.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85840002|gb|EAQ57261.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           CF93-6]
          Length = 602

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 150/444 (33%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L T    +   G+  WL  G +    +  ++ +   
Sbjct: 194 LKEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHR 252

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S +
Sbjct: 253 LRGYEPVRGPELLKADAWKISGHYANYKENM-YFTQIDEQEYGIKPMNCVGHIKIYQSDV 311

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++    
Sbjct: 312 RSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFV 370

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +                               T   +     +  +    +     D+
Sbjct: 371 DNLMKLFDFSYEMEI------------------STKPEKAIGDDEIWEIATKALKEALDE 412

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D+L    +     ++    F   +++       
Sbjct: 413 QGLKYGIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPSRF----KLE 461

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +D +      +    +G+      ++            +       + + I    + 
Sbjct: 462 YTDSDNEKKQPVMLHRAILGSFERFIGILTEHC------AGEFPFFIAPTAVGIVPIGEA 515

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I   L ++  D    +  E +  +   A+    P+ +++G   V+   V ++ 
Sbjct: 516 HIAYAKEIQKELLELNIDSEVYEKNESLSKKIRTAEKQKLPMILVLGDDEVAKRSVALRD 575

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    ++++SL+E I     + S 
Sbjct: 576 RRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|218200880|gb|EEC83307.1| hypothetical protein OsI_28676 [Oryza sativa Indica Group]
          Length = 716

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 71/446 (15%), Positives = 141/446 (31%), Gaps = 67/446 (15%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  +Y   + +   RD  +      L     HQ S G   +LP G    + +   +R++ 
Sbjct: 337 RLKEYKHLLEEAKKRDHRLLGQTQDLF--FFHQLSPGSCFFLPHGAIIYNKLMDFLRQQY 394

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + +  LW  SG   +Y + M  + +   +     P +      +F   
Sbjct: 395 RDRGYQEVLSPNIYNMQLWETSGHAANYKENMF-VFEIEKQEFGLKPMNCPGHCLMFEHR 453

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP       +  R+EL     G+ R R F   DA+ F       K     +   
Sbjct: 454 VRSYRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCR-ESQIKDEVKAVLDF 512

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G K   +   + P       E                   +          +
Sbjct: 513 INYVYEIFGFKY-ELELSTRPEKYLGDIE-----------------TWNKAEQQLTEALN 554

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +      I E   A Y    D+    +FD+L    + +     +G +             
Sbjct: 555 EFGKPWQINEGDGAFYGPKIDIG---VFDALKRKFQCATLQAILGSV------------- 598

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                                 R+ A ++E  +    +               + +    
Sbjct: 599 ---------------------ERMFAILLEHYNGKWPLWLSPR-------QAIVCSISSN 630

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +++ AR+ + G  V  D+    I  +   A L  F   ++VG++     +V ++ 
Sbjct: 631 SVEYAKQVRARIHEAGFHVAIDETDRTIQKKVREAQLAQFNYILVVGAQEAETGQVSVRV 690

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R       +S++++I       +  +
Sbjct: 691 RDKAELATVSIDDIITRFKEEVAAYK 716


>gi|327334245|gb|EGE75959.1| proline--tRNA ligase [Propionibacterium acnes HL097PA1]
          Length = 581

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 106/271 (39%), Positives = 154/271 (56%), Gaps = 6/271 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFVRTLREDPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           + +         P A   D  + +  +SL  
Sbjct: 241 LPI------VGLPEAEVVDTPDARTIESLVR 265



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              DV   +  D  P+   +   ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 395 GVIDVAEIREGDPAPDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ 
Sbjct: 455 SYGLGVSRAVAAIAEGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 514 GLEVLLDDRKASPGVKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572

Query: 436 NYASHRFS 443
                   
Sbjct: 573 CAVLKEVR 580


>gi|297202727|ref|ZP_06920124.1| prolyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197713306|gb|EDY57340.1| prolyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 567

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 102/239 (42%), Positives = 144/239 (60%), Gaps = 1/239 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + GI+SWLPLG+K L NV  I+REE 
Sbjct: 8   RMSQLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGIWSWLPLGKKVLANVERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P +   + +  +GR+D YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVLLPAILPREPYEATGRWDEYGPELFRLQDRKGGDYLLGPTHEEIFTLLVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REFLMKD+YSFD   EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQHKYRDEARPRAGILRGREFLMKDSYSFDTEDEGLARSYALHRQAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            ++F RLGL      A +G +GG  S EF+  A+ GE   F      DF   +E   ++
Sbjct: 188 QKVFERLGLDYRICAATAGAMGGSKSEEFLAPAEAGE-DTFADCPNCDFAANTEAITYE 245



 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 6/177 (3%)

Query: 266 KLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           +  D  P+        R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R
Sbjct: 393 QEGDPCPKCGTGLKLDRAIEIGHIFQLGRKYADALKLDVLGQNGKPVRVTMGSYGIGVSR 452

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            VAA+ E + D KG+ WP  VAP  +    + A   +  +    +  +L + G  V  DD
Sbjct: 453 AVAALAEQTADDKGLCWPAEVAPADVH--VVAAGKALQIELALDVSEKLREAGLRVLVDD 510

Query: 384 M-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             G   G +F  ++L+G P  ++ G +      +E+K R TG RE+++++E I   +
Sbjct: 511 RAGVSPGVKFTDSELIGVPKILVAGRRSAE-GVLELKDRRTGEREELTVDEAIARLT 566


>gi|256376220|ref|YP_003099880.1| threonyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
 gi|255920523|gb|ACU36034.1| threonyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
          Length = 682

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 69/448 (15%), Positives = 131/448 (29%), Gaps = 49/448 (10%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R      G   +  
Sbjct: 259 EAERRDHRKLGVELDLFS-FPDEIGSGLAVFHPRGGIIRKAMEDYSRARHEAEGYEFVYS 317

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDIFR 119
           P +   +L+  SG  D Y   M                 R  +     P +      IFR
Sbjct: 318 PHITKGNLFETSGHLDWYRDGMYPAMHLDAELNEDGTIRRPGQDYYLKPMNCPFHDLIFR 377

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP   ++    +R E      G+ R R     DA+ F    +  +     + 
Sbjct: 378 SRGRSYRELPLRMFEFGSVYRYEKSGVIHGLTRVRGMTQDDAHIFCTLDQVQEEL-KSLL 436

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    GL    +   +                  + +   S +  +    +    
Sbjct: 437 AFVLGLLRDYGLDDFYLELSTR----------------NDEKYVGSDELWETATETLRVA 480

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +D            A Y       + +  D+L    ++S   ++    F    ++    
Sbjct: 481 AEDSGLELVPDPGGAAFYGPKI---SVQAKDALGRTWQMSTIQLD----FNLPERF---- 529

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + G DG       +     G++     V+    +     +P  +AP ++  I I   
Sbjct: 530 ELEYTGPDGSRQRPVMIHRALFGSIERFFGVLT---EHYAGAFPAWLAPVQVVGIPIADE 586

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                     +   L K G  V  D   +++  +         P  ++ G K V    V 
Sbjct: 587 HADHL---FAVAKELKKHGVRVEIDASDDRMQKKIRNHTTQKVPFMLLAGGKDVESGAVS 643

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            + R       + +E+ +       S  
Sbjct: 644 FRFRDGTQINGVPVEQAVATVVGWISRR 671


>gi|314936576|ref|ZP_07843923.1| proline--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
 gi|313655195|gb|EFS18940.1| proline--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
          Length = 566

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 113/237 (47%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L++++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPSEAEALSHQLLLKAGLIKQSTSGIYSYLPLATRVLNHISRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T I R 
Sbjct: 61  MENIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y +M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQEMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S++  D+    E  
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGHHTHEFMALSEIGEDTIVYSEN-SDYAANIEKA 236



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 99/173 (57%), Gaps = 2/173 (1%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                  A GIEVG +F  GTKYS  M+A F    GK   + MG YGIG  R ++A++E 
Sbjct: 395 GSGNAKFAEGIEVGQVFKLGTKYSEAMNAKFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQ 454

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++D  GIIWP SV PF + LI I    +   +  +K+Y+ L     DV +DD  E+ G +
Sbjct: 455 NNDENGIIWPKSVTPFDLHLITINPKKEEQLELGDKLYSELQSK-YDVLYDDRKERAGVK 513

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           F  ADL+G P++++VG K  S+  VE+K R TG  E++ + E+ N+ +  +  
Sbjct: 514 FNDADLIGLPIRIVVG-KNASEGIVEVKVRQTGESEEVHINELDNHIASLYEK 565


>gi|149200279|ref|ZP_01877300.1| threonyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
 gi|149136643|gb|EDM25075.1| threonyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
          Length = 603

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 71/438 (16%), Positives = 143/438 (32%), Gaps = 39/438 (8%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D +    +L +      +  KG+  W+P G    D +    RE + + G   +S P + S
Sbjct: 187 DHKKLGKELDIFH-FDEKVGKGLALWMPNGTIIRDEIEKYAREMEMKYGYQRVSTPHIAS 245

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKA-------MIYGPTHEEVMTDIFRSHIKSYRNLP 129
             L+  SG    Y   M    + N+               +      I+ +  +SY+ LP
Sbjct: 246 EKLFQTSGHLPYYADSMFPPMELNEGDDAENSEKYYLKAMNCPYHHLIYSARPRSYKELP 305

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           +   +    +R E      G++R R   M DA+ + LT +  +  +  M   Y+  +   
Sbjct: 306 YRLCEYGTCYRYEKSGELSGLLRVRCMTMNDAHVY-LTEDQFEEEFRSMVKMYMEFYETF 364

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                  R        D S +F                  D          D++     +
Sbjct: 365 KFSDYSFRLS----VRDDSDKF-----------VGDPAVWDQAEALLAKVMDELGLEYFV 409

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    DV  + L       + +S   ++      F +      +  +  +D  
Sbjct: 410 GEGEAAFYGPKIDVQFKNLM---GREETLSTIQVD------FQSACKEKFALKYVDSDNT 460

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +    +       +      I    +  G  +P   AP ++ ++ +      C +    I
Sbjct: 461 EKEPIIIHRA--PLSTHERFISFIMEYYGGAFPAWCAPVQVCILPV---QDSCMEFTNSI 515

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L++    V  DD       +         P+ +I+G + V+D+ V ++   +  +  
Sbjct: 516 ANELTRDLYRVEIDDSNNTFNKKIRTNTKRKIPILLIIGEQEVADNTVTVRRYGSRDQIT 575

Query: 429 MSLEEVINYASHRFSNNR 446
           +S +E +          +
Sbjct: 576 VSRDEFVAIFKAEVKERK 593


>gi|302542146|ref|ZP_07294488.1| proline-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302459764|gb|EFL22857.1| proline-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 569

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 112/268 (41%), Positives = 150/268 (55%), Gaps = 2/268 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S   L  L+E+P DAE ASHKL++R G + + S GI++WLP+G+K L+NV+ I+REE 
Sbjct: 9   RMSTLMLKTLREDPADAETASHKLLVRAGYVRRASAGIWTWLPVGKKVLENVSRIVREEM 68

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 69  DAIGAQEVLLPALLPKEPYEASGRWEEYGDLLFRLKDRKGGDYLLGPTHEEIFTQTVKDQ 128

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD + EG   SY     +Y
Sbjct: 129 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTSDEGLAESYRLHREAY 188

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFD 240
            RIF RLGL    + A SG +GG  S EF+  A  GE   V C          +  T   
Sbjct: 189 QRIFERLGLDYRIVSAVSGAMGGSASEEFLAPAAAGEDTFVDCPNCDYAANTEAVTTAVP 248

Query: 241 DIISLNS-IVEQWTAPYAATSDVHNEKL 267
            +       VE+   P   T +   E L
Sbjct: 249 AVEGAEHGPVEELDTPDTPTIETLAEHL 276



 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 269 DSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+        R IE+GHIF  G KY+        G +GK   V MGSYGIG  RVVA
Sbjct: 398 DPCPQCGTGIALDRAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVSRVVA 457

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-G 385
           A+ E + D  G+ WP  VAP  +    + A   +  +    +  +L   G  V  DD  G
Sbjct: 458 ALAEQTFDDSGLCWPREVAPADVH--IVAAGKALQTELALDLAEKLGTAGVRVMVDDRAG 515

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              G +F  A+L+G P  ++VG +   D  VE+K R TG RE++ ++E ++  + 
Sbjct: 516 VSPGVKFTDAELIGVPTILVVG-RGAKDGVVELKDRRTGDREELPIDEALSRLTS 569


>gi|302063985|ref|ZP_07255526.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato K40]
          Length = 590

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 74/398 (18%), Positives = 129/398 (32%), Gaps = 40/398 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M        +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TQSESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        L +
Sbjct: 348 RELPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES-AAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E                   D    +  +  D    
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDE-----------------LWDRAESALASALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +     A Y    +     L D L    +     ++    F    + S    A +  
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVWQCGTLQLD----FNLPIRLS----AEYVS 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D        +    +G+      ++   ++     +P  +AP +  ++NI        D
Sbjct: 499 EDNSRKNPVMLHRAILGSFERFIGILIEHYE---GAFPAWLAPTQAVIMNITDK---QAD 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
              ++   L++ G     D   E+IG +     LL  P
Sbjct: 553 FALEVEKTLAESGFRAKSDLRNEKIGFKIREHTLLKVP 590


>gi|320528406|ref|ZP_08029568.1| threonyl-tRNA synthetase [Solobacterium moorei F0204]
 gi|320131320|gb|EFW23888.1| threonyl-tRNA synthetase [Solobacterium moorei F0204]
          Length = 591

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 149/438 (34%), Gaps = 32/438 (7%)

Query: 11  LQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           L++   RD       + +          G+  WLP G      ++  I  ++   G   +
Sbjct: 176 LEDAKQRDHRKLGKDMQIFM-FSDIVGGGLPLWLPNGLTVRRLLSDYIMNKELARGYQHV 234

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P++ S  L+  SG    Y  +M  +  R+D   +  P +      I++S + SYR+LP
Sbjct: 235 LTPSVASTKLYKISGHLAHYKDDMFPIMSRDDDEFVLRPMNCPEHMIIYKSQLHSYRDLP 294

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               +I   FR E      G+ RSR F   D++ F    + +      +    L ++   
Sbjct: 295 IRIAEIANDFRFEASGALTGIERSRAFTQNDSHIFCTEEQIASE-IKAVTELILDVYKDF 353

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            L     R                       + F + D  +           ++      
Sbjct: 354 NLNQFEFRLSLRDKENTE-------------KYFGNDDLWERSESELREVLKEMNVPYYE 400

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    DV   ++  +L  +  +S   ++         ++ L   A       K
Sbjct: 401 AEGEAAFYGPKIDV---QVRSALGHDVTLSTIQLDY----QLPERFELEYVA---NGGEK 450

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              V +    +G++    A +     G   +W        I +       +   +  +K+
Sbjct: 451 KRPVVIHRAILGSIDRFVAFLLEETKGILPLWLAPRQAVVIPVSP-----EAHGEYAKKV 505

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K+G     DD  E++G +   A     P++V+VG   + ++ + ++   +     
Sbjct: 506 VEELRKIGVRTELDDRNEKLGYRIREAQTNKLPIEVVVGDGEIENNGITLRRYGSRQETK 565

Query: 429 MSLEEVINYASHRFSNNR 446
           MSLEE +          R
Sbjct: 566 MSLEEFLAAIKVEIDEKR 583


>gi|317125011|ref|YP_004099123.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Intrasporangium
           calvum DSM 43043]
 gi|315589099|gb|ADU48396.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Intrasporangium
           calvum DSM 43043]
          Length = 664

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 69/447 (15%), Positives = 135/447 (30%), Gaps = 33/447 (7%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L +   RD      +L L +    +   G+  + P G      +   +R     
Sbjct: 248 KAYLDRLAEAERRDHRRLGAELDLFS-FPDELGSGLPVFHPKGGVIKREMEDYVRRRHIE 306

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +    L+  SG    Y   M    +           +  +   I++S  +
Sbjct: 307 EGFDYVGTPHITKDGLFHTSGHLPYYADTMFPPMELEGAKYQLKAMNCPMHNLIYQSRGR 366

Query: 124 SYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  F++    +R E      G+ R R     D++S+    +        +    L
Sbjct: 367 SYRELPLRFFEFGSVYRYEKSGVVHGLTRVRGMTQDDSHSYVTPEQAPAE-IKHLLDFVL 425

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    GL    +   +    G+ S +FI   +             +             
Sbjct: 426 SLLRDFGLDDFYLELSTRDTEGEKSAKFIGSDEQ-----------WEVATKVLEDVATAS 474

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y       + +  D++    ++S    +      FG          +
Sbjct: 475 GLELVADPGGAAFYGPKI---SVQARDAIGRTWQMSTIQYDFNQPERFG--------LEY 523

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + ADG       + S   G++     V+   + G   +W   V    + +          
Sbjct: 524 QAADGTRQQPVMIHSAKFGSIERFLGVLVEHYAGAFPVWLSPVQVLGVPVA------DEY 577

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    +  RL + G  V  D   ++   +   A     P  +I G    +   V  + R
Sbjct: 578 ADYLGGVLDRLRRKGVRVELDASDDRFPKKIRNASKAKVPFVLIAGEDDRAADAVSFRFR 637

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPV 448
               +  + +++ I       ++   V
Sbjct: 638 DGSQKNGVPIDDAIAEVLAAIASRAQV 664


>gi|300743963|ref|ZP_07072983.1| proline--tRNA ligase [Rothia dentocariosa M567]
 gi|300380324|gb|EFJ76887.1| proline--tRNA ligase [Rothia dentocariosa M567]
          Length = 605

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 100/239 (41%), Positives = 141/239 (58%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASHKL++R G I + + G+Y+WLPLG K L  V  I+REE 
Sbjct: 4   RLSNLFVRTLREDPVDAEVASHKLLVRAGYIRRAAPGVYTWLPLGLKVLRKVENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L   + +  + R++ YG  + RL DR    M+  PTHEE+ T + +  
Sbjct: 64  NAIGAQEVLFPALLPREPYEATNRWEEYGDNLFRLQDRKGADMLLAPTHEEMFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF +  EG   +Y     +Y
Sbjct: 124 YSSYKDLPLYIYQIQNKYRDEARPRAGLLRGREFVMKDSYSFTVDDEGLNEAYEAHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            RIF+RLGL ++ + A+SG +GG  S EF+     GE     S       + +  T   
Sbjct: 184 QRIFNRLGLDTVIVTAQSGAMGGSRSEEFLHPTPVGEDTFVRSAGGYAANVEAVTTVVP 242



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/190 (32%), Positives = 95/190 (50%), Gaps = 5/190 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     ++ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 418 GTLEACEVREGDPAPDGSGPLIAARGIEMGHIFQLGRKYAEALGLKVLDQNGKLQTVTMG 477

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R +AA+ E +HD KG+IWP ++AP  +  I I   D    +  E + A L   
Sbjct: 478 SYGIGVTRALAAIAEGNHDEKGLIWPRNLAPADVH-IVITNKDAQSHEYAETLSAELEGA 536

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V  DD      G +F  A+LLG P  +++G +   D  +E+K R +G   D+++ + 
Sbjct: 537 GVQVLLDDRLKTSPGVKFGDAELLGVPTILVIG-RGFKDGTLELKDRRSGEARDIAVSDA 595

Query: 435 INYASHRFSN 444
           +        +
Sbjct: 596 VREILAEIRS 605


>gi|311113213|ref|YP_003984435.1| proline--tRNA ligase [Rothia dentocariosa ATCC 17931]
 gi|310944707|gb|ADP41001.1| proline--tRNA ligase [Rothia dentocariosa ATCC 17931]
          Length = 605

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 100/239 (41%), Positives = 141/239 (58%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASHKL++R G I + + G+Y+WLPLG K L  V  I+REE 
Sbjct: 4   RLSNLFVRTLREDPVDAEVASHKLLVRAGYIRRAAPGVYTWLPLGLKVLRKVENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L   + +  + R++ YG  + RL DR    M+  PTHEE+ T + +  
Sbjct: 64  NAIGAQEVLFPALLPREPYEATNRWEEYGDNLFRLQDRKGADMLLAPTHEEMFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF +  EG   +Y     +Y
Sbjct: 124 YSSYKDLPLYIYQIQNKYRDEARPRAGLLRGREFVMKDSYSFTVDDEGLNEAYEAHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            RIF+RLGL ++ + A+SG +GG  S EF+     GE     S       + +  T   
Sbjct: 184 QRIFNRLGLDTVIVTAQSGAMGGSRSEEFLHPTPVGEDTFVRSAGGYAANVEAVTTVVP 242



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/190 (32%), Positives = 94/190 (49%), Gaps = 5/190 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     ++ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 418 GTLEACEVREGDPAPDGSGPLIAARGIEMGHIFQLGRKYAEALGLKVLDQNGKLQTVTMG 477

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R +AA+ E +HD KG+IWP ++AP  +  I I   D    +  E + A L   
Sbjct: 478 SYGIGVTRALAAIAEGNHDEKGLIWPRNLAPADVH-IVITNKDAQSHEYAETLSAELEGA 536

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V  DD      G +F  A+LLG P  +++G +   D  +E+K R  G   D+++ + 
Sbjct: 537 GVQVLLDDRLKTSPGVKFGDAELLGVPTILVIG-RGFKDGTLELKDRRNGEARDIAVSDA 595

Query: 435 INYASHRFSN 444
           +        +
Sbjct: 596 VREILAEIRS 605


>gi|86160363|ref|YP_467148.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|114152165|sp|Q2IGK6|SYP1_ANADE RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|85776874|gb|ABC83711.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 575

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 119/393 (30%), Positives = 177/393 (45%), Gaps = 7/393 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R ++ F+P L+E P DA++ASHKL++R G I Q   GIY +LPL +++L  + AI+REE 
Sbjct: 5   RYTQAFIPTLKEAPADAQVASHKLLVRAGFIRQLGAGIYDYLPLAKRSLTKIEAIVREEM 64

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E  +P L  A++W ESGR++  G  M RL DR       G THEE+ T I R  
Sbjct: 65  NAIGGQEFFLPALHPAEIWKESGRWEVMGDNMFRLKDRKGGDYGLGMTHEEIFTAIARDE 124

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR LP  +YQIQ KFRDE RP+ G++R R+F MKDAYSFD+   G   SY     +Y
Sbjct: 125 LRSYRQLPQVWYQIQTKFRDEPRPKSGLLRVRQFTMKDAYSFDVDRAGLDKSYEDQRQAY 184

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF---MDFPIPSENTD 238
            +IF R GL  + ++A SG +GG  S EF+V  D GE  V          +    +    
Sbjct: 185 EKIFTRCGLDFVAVQAHSGSMGGSESSEFMVRTDAGEDLVAACPRCRYAANTETATSRVA 244

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSL 296
            +      +  E++  P   T +   E+   S+P     +      +   +         
Sbjct: 245 AEADGPGLAAPEKFPTPGVVTIEA-LEQAPHSVPARRQLKTLVYMADERPVIAVVRGDQE 303

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              A  + A G        +  I  +    A    +            +      +   A
Sbjct: 304 LNEAKLQTATGAQVVRPAHAEEIPPLMGAHAGSLGAVRFTRARVVVDPSLADRKDMVTGA 363

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           ++         +   L   G     +    + G
Sbjct: 364 NEDGFHLRGVDVRRDLLAHGA-TLAELRTVKAG 395



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/192 (38%), Positives = 104/192 (54%), Gaps = 3/192 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A  A  +++   K  +  P         + +EVGHIF  GTKYS  M AT   A GK   
Sbjct: 381 AHGATLAELRTVKAGEGCPRCDGALEVFKALEVGHIFKLGTKYSESMKATVLDAGGKQVP 440

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + MGSYGIG  R++AA IE  HD  GI++P ++APF  +++ +   +   R A E++ A 
Sbjct: 441 IVMGSYGIGVERILAAAIELHHDDNGIVFPMAIAPFHATVLTLGP-EPELRKAAEEVVAA 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G +V +DD  E+ G +F  ADLLG P++V VG K ++   VE K R  G  E + L
Sbjct: 500 LGKEGVEVLFDDRDERAGVKFKDADLLGIPIRVAVGKKGLAAGNVEWKLRRGGAVELVPL 559

Query: 432 EEVINYASHRFS 443
            EV   A+    
Sbjct: 560 GEVARKAAEAVR 571


>gi|203284615|ref|YP_002222355.1| threonyl-tRNA synthetase [Borrelia duttonii Ly]
 gi|238690570|sp|B5RMR3|SYT_BORDL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|201084058|gb|ACH93649.1| threonyl-tRNA synthetase [Borrelia duttonii Ly]
          Length = 583

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 158/448 (35%), Gaps = 39/448 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L + +E   RD      +L L +    +   G+  + P G +    +    REE  +
Sbjct: 172 KAYLKLQEEIKKRDHRKLGRELNLFSVH-DEIGPGLIFFHPHGARIRALIENFWREEHFK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y + M    + +       P +      I+ +   
Sbjct: 231 NGYDILFTPHIGKSWLWETSGHLDFYKESMFEKIEMDRSDYYVKPMNCPFHIAIYNTDKH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G MR R F   DA+      + +     ++    +
Sbjct: 291 SYRDLPFRWAELGTVYRYEKIGAIHGTMRVRGFTQDDAHIICTYEQVNFE-VREVLRFAI 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++++ G  ++     + P                  +     D     +        D 
Sbjct: 350 DMWNKFGFTNLKAYLSTKP-----------------EKAVGDDDDWQMAVKVLEKALIDF 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A Y    D+   K+ DSL    ++S    +    F    ++ +  +A  
Sbjct: 393 NIDFDIDEGGGAFYGPKIDL---KIIDSLGRAWQMSTIQFD----FNLPVRFKMTYTAE- 444

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +     +    +G++     ++   + G   +W           + I   + +  
Sbjct: 445 --DGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPVW------LAPLQVVIIPVNSIVE 496

Query: 363 DACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   ++ +R    G  + +D+    ++ ++         P   I+G + V + K+ I+ R
Sbjct: 497 EYALEVLSRFQNEGIRIKFDNYCNMRMNAKIRQYQSKKVPYMFIIGEREVVEGKISIRTR 556

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
                  + L+E + +   + SN + +L
Sbjct: 557 TNEQINGLELKEALEFVKLKISN-KEIL 583


>gi|119963667|ref|YP_947320.1| prolyl-tRNA synthetase [Arthrobacter aurescens TC1]
 gi|152074745|sp|A1R508|SYP_ARTAT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119950526|gb|ABM09437.1| prolyl-tRNA synthetase [Arthrobacter aurescens TC1]
          Length = 603

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 108/272 (39%), Positives = 153/272 (56%), Gaps = 6/272 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ SHKL++R G I + + GIY+WLPLG   L  V  IIR+E 
Sbjct: 4   RLSQLFLRTLREDPVDAEVDSHKLLVRAGYIRRAAPGIYTWLPLGLSVLRKVEDIIRQEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  + R+  YG+ + RL DR     +  PTHEE+ T + +  
Sbjct: 64  SAIGAQEVHFPALLPREPYEATNRWTEYGEGLFRLQDRKGADYLLAPTHEEMFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY     +Y
Sbjct: 124 YSSYKDLPLSLYQIQNKYRDEARPRAGLLRGREFIMKDSYSFDIDDAGLDASYAAHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L+IF RLGL+ IP+ A +G +GG  S EF+   + GE     S       + +  T   D
Sbjct: 184 LKIFERLGLEVIPVAATAGAMGGSKSEEFLFPTEIGEDTFVRSAGGYYANVEAVTTVVPD 243

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                  ++   AP A   D  N    D+L +
Sbjct: 244 ------EIDFSNAPAAEVLDTPNTPTIDTLVD 269



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/191 (33%), Positives = 103/191 (53%), Gaps = 5/191 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +    +  D  P+      +ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 415 GVIESTEVRAGDPAPDGSGPLETARGIEMGHIFQLGRKYAEALDLKVLDQNGKQQVVTMG 474

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E+++D +G++WP SVAP  + ++ +   D+   +A EK+   L   
Sbjct: 475 SYGVGVTRAVAALAEANNDDRGLVWPRSVAPADVHVVAVGRGDE-IFEAAEKLSLELEAA 533

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G DV +DD      G +F  A+L+G P  + VG + + D  VEIK R +G  E++S+++ 
Sbjct: 534 GLDVIFDDRPKVSPGVKFGDAELVGVPTILAVG-RGLVDGVVEIKDRRSGEAENISVDKA 592

Query: 435 INYASHRFSNN 445
           ++Y  +     
Sbjct: 593 VDYVVNAVRTR 603


>gi|228474993|ref|ZP_04059721.1| proline--tRNA ligase [Staphylococcus hominis SK119]
 gi|228270978|gb|EEK12366.1| proline--tRNA ligase [Staphylococcus hominis SK119]
          Length = 566

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 113/237 (47%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P ++E P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L++++ IIREE
Sbjct: 1   MKQSKVFIPTMREVPSEAEALSHQLLLKAGLIKQSTSGIYSYLPLATRVLNHISRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+E+ +P LQ A+LW ESGR+ +YG E++RL DRN +    GPTHEEV+T I R 
Sbjct: 61  MENIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y +M+ +
Sbjct: 121 ELKSYKQLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQEMYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L++ GE  +  S++  D+    E  
Sbjct: 181 YSRIFKRVGINARPVVADSGAIGGHHTHEFMALSEIGEDTIVYSEN-SDYAANIEKA 236



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 67/173 (38%), Positives = 99/173 (57%), Gaps = 2/173 (1%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                  A GIEVG +F  GTKYS  M+A F    GK   + MG YGIG  R ++A++E 
Sbjct: 395 GSGNAKFAEGIEVGQVFKLGTKYSEAMNAKFIDNQGKAQPLIMGCYGIGVSRTLSAIVEQ 454

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++D  GIIWP SV PF + LI I    +   +  +K+Y+ L     DV +DD  E+ G +
Sbjct: 455 NNDENGIIWPKSVTPFDLHLITINPKKEEQLELGDKLYSELQSK-YDVLYDDRKERAGVK 513

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           F  ADL+G P++++VG K  S+  VE+K R TG  E++ + E+ N+ +  +  
Sbjct: 514 FNDADLIGLPIRIVVG-KNASEGIVEVKVRQTGESEEVHINELDNHIASLYEK 565


>gi|116669968|ref|YP_830901.1| prolyl-tRNA synthetase [Arthrobacter sp. FB24]
 gi|152074746|sp|A0JUT1|SYP_ARTS2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116610077|gb|ABK02801.1| prolyl-tRNA synthetase [Arthrobacter sp. FB24]
          Length = 603

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 109/276 (39%), Positives = 153/276 (55%), Gaps = 2/276 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK FL  L+E+P DAE+ASH+L++R G I + + GIY+WLPLG   L  V  +IREE 
Sbjct: 4   RLSKLFLRTLREDPADAEVASHRLLVRAGYIRRAAPGIYTWLPLGLSVLRKVEKVIREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+  P L   + +  + R+  YG+ + RL DR     +  PTHEE+ T + +  
Sbjct: 64  AAIGAQEVHFPALLPKEPYEATNRWTEYGEGIFRLKDRKGGDYLLAPTHEEMFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SYN    +Y
Sbjct: 124 YSSYKDLPLSIYQIQNKYRDEARPRAGLLRGREFIMKDSYSFDVDDAGLDASYNAHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L+IF RLGL+ IP+ A +G +GG  S EF+   + GE     S       + +  T    
Sbjct: 184 LKIFERLGLEVIPVAATAGAMGGSRSEEFLHPTEIGEDTFVRSAGGYAANVEAVTTVVPA 243

Query: 242 II--SLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            I  S     E    P   T D   +     +P ++
Sbjct: 244 EIDFSNAPAAEIRDTPNTPTIDTLVDAANQLVPRDE 279



 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 102/191 (53%), Gaps = 5/191 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +    +  D  P+      +ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 415 GVIECTEVRAGDEAPDGSGPLETARGIEMGHIFQLGRKYAEALELKVLDQNGKQVVVTMG 474

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ ES+HD KG++WP +VAP  + ++ +    +    A E++   L   
Sbjct: 475 SYGVGVTRAVAALAESNHDAKGLVWPRAVAPADVHVVAVGRG-EEIFAAAEQLSLELEAA 533

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD      G +F  A+L+G P  + VG + + D  VEIK R +G  E++++E+ 
Sbjct: 534 GLEVIYDDRPKVSPGVKFGDAELIGVPTILAVG-RGLVDGVVEIKDRRSGEAENVAVEKA 592

Query: 435 INYASHRFSNN 445
           ++Y  +   + 
Sbjct: 593 VDYVVNAVRSK 603


>gi|307198619|gb|EFN79469.1| Probable prolyl-tRNA synthetase, mitochondrial [Harpegnathos
           saltator]
          Length = 434

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 139/446 (31%), Positives = 218/446 (48%), Gaps = 46/446 (10%)

Query: 2   RRSKYFLPI---LQENPRDAEIASH--KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAI 56
           R SK F P+   +  N    EI S   KLM+  G+I   S G+YS LPLG + L+ +  I
Sbjct: 11  RTSKIFQPLPSGIFANKDKTEILSKSYKLMINYGIIKSVSTGMYSILPLGMRVLNKLIKI 70

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           I +E    GA ++ +P L SA LW +S RY+S   E+  + DR+DK  I  PT+EE + D
Sbjct: 71  IDKEMTDLGAEKIMLPALTSAKLWKKSNRYNSNKTELFTVTDRHDKEYILSPTYEEAICD 130

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +  +     ++LP   YQI  K+RDE++PR G +RSREF+MKD Y+FD T   ++ +YN 
Sbjct: 131 LVSATYLPEKSLPLRLYQISSKWRDEMKPRLGFIRSREFIMKDLYTFDTTLNKAQDTYNL 190

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +  SY  IF ++G+  +    + G IGG  SHE+  ++D GE  +              N
Sbjct: 191 VCESYSNIFKQIGIDHMKAVGDVGTIGGLSSHEYHYISDIGEDVILWCSSC--------N 242

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTKY 294
              ++IIS                         + PE K    R   +E+GH F   TKY
Sbjct: 243 YTINEIISK----------------------ITTCPECKGELQRHNSVEIGHTFLLNTKY 280

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN- 353
           S P++A +   + K   + MG YG+G  R+ A ++E       + WP  +AP+   +I  
Sbjct: 281 SQPLNAMYI-ENNKLKPMIMGCYGLGVSRIFALIVEILSTNNEMRWPTKLAPYTACIIPP 339

Query: 354 -IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFV 411
              + ++      E+++  L K   D   DD  +  IG +   A  +G+P  +++G    
Sbjct: 340 KTGSKEEYISAYIEQLFEILQKRDIDTILDDRTQFTIGKRLVYARAIGYPYIIVIGK--A 397

Query: 412 SDSKV---EIKHRLTGIREDMSLEEV 434
           +   +   EI      +   +SLE++
Sbjct: 398 ATQSIPLFEIHDINNSVSHKLSLEQI 423


>gi|261337772|ref|ZP_05965656.1| threonine--tRNA ligase [Bifidobacterium gallicum DSM 20093]
 gi|270277225|gb|EFA23079.1| threonine--tRNA ligase [Bifidobacterium gallicum DSM 20093]
          Length = 681

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 62/454 (13%), Positives = 133/454 (29%), Gaps = 49/454 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      ++ L +    +   G+  + P G   ++ +    R+   R     
Sbjct: 247 RMEEAAKRDHRKLGQEMDLFS-FPDEIGPGLAVFHPKGAAIINAMEDYSRDMHRRHHYSF 305

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTD 116
           +  P +    L+  SG    Y   M                 +        P +  +   
Sbjct: 306 VQTPHITKGKLYETSGHLQWYKDGMYPAMHLDEEKDAEGNIVKQGFDYYLKPMNCPMHNL 365

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +       
Sbjct: 366 IFKSRQRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHIYCTREQMKDEL-K 424

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +    L++    GL    +   +                  E +   S +  +    + 
Sbjct: 425 NLLQFVLKLLKDYGLNDFYLELST----------------KDEHKFVGSDEIWEEATNTL 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                D            A Y       + +  D++    +VS   ++      FG    
Sbjct: 469 AEVAKDSGLELVADPGGAAFYGPKI---SVQARDAIGRTWQVSTIQLDFNLPERFG---- 521

Query: 296 LPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +   DG       +     G++    A++   + G    W   V    + +   
Sbjct: 522 ----LEYIAKDGTHQRPVMIHRALFGSIERFFAILLEHYAGALPAWIAPVQALGVPVA-- 575

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      ++    L +    V  D   ++ G +   A     P  +IVG + +S++
Sbjct: 576 ----DEFAPHLQRFMDSLEEDLVRVEIDLSDDRFGKKIRNASKSKVPFILIVGEEDMSNN 631

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            V  + R       + +++   +     +    V
Sbjct: 632 AVSFRFRDGSQLNGVPVDDARQWILKAINERVQV 665


>gi|169630222|ref|YP_001703871.1| prolyl-tRNA synthetase [Mycobacterium abscessus ATCC 19977]
 gi|226701313|sp|B1MD96|SYP_MYCA9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169242189|emb|CAM63217.1| Prolyl-tRNA synthetase ProS [Mycobacterium abscessus]
          Length = 580

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 98/250 (39%), Positives = 144/250 (57%), Gaps = 1/250 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+++P DAE+ SHKL++R G +   + G+YSWLPLG + L  +  I+REE 
Sbjct: 4   RLSELFVRTLRDDPADAEVPSHKLLIRAGYVRPVAPGVYSWLPLGLRVLRKIENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+ +P L     +  + R+  YG  + RL DR D  M+ GPTHEE+     +  
Sbjct: 64  NAIGGQEILLPALLPRAPYETTNRWTEYGDSLFRLKDRRDNDMMLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQ+Q K+RDE RPR G++R REF+MKD+YSFD + +G K +Y+    +Y
Sbjct: 124 YSSYKDFPVILYQVQTKYRDEARPRAGILRGREFVMKDSYSFDTSDDGLKAAYHAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFD 240
            RIF RLGL  + + A SG +GG  S EF+  + TGE   V C +      + +  T   
Sbjct: 184 QRIFGRLGLDYVIVAATSGAMGGSASEEFLAESPTGEDTFVRCVESGYAANVEAVITPAP 243

Query: 241 DIISLNSIVE 250
               +  + E
Sbjct: 244 PARPIEGLAE 253



 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 100/187 (53%), Gaps = 4/187 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+   + VSARGIE+GHIF  G KY+   +    G +GK   +  G
Sbjct: 395 GTIEAAEVRDGDPSPDGAGQLVSARGIEIGHIFQLGRKYTDAFTVDVLGENGKPVRLTQG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA V E  HD  G+ WP +V+PF +  + I   D   R   E++ A L ++
Sbjct: 455 SYGIGVSRLVAVVAEQQHDELGLRWPSAVSPFDVH-VVIANKDDAARAGAEELAAELDRL 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +F  A+LLG P  V++G +  +D  +E+++R TG  + +++ + +
Sbjct: 514 GHEVLLDDRTASPGVKFKDAELLGVPWIVVIG-RGWADGTIELRNRFTGETQPIAVTDAV 572

Query: 436 NYASHRF 442
              +   
Sbjct: 573 ASVTQAI 579


>gi|197124440|ref|YP_002136391.1| prolyl-tRNA synthetase [Anaeromyxobacter sp. K]
 gi|226731425|sp|B4UGI0|SYP_ANASK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|196174289|gb|ACG75262.1| prolyl-tRNA synthetase [Anaeromyxobacter sp. K]
          Length = 574

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 110/274 (40%), Positives = 153/274 (55%), Gaps = 4/274 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+P L+E P DA++ASHKL++R G I Q   GIY +LPL +++L  V AI+REE 
Sbjct: 5   RYSQAFIPTLKEAPADAQVASHKLLVRAGFIRQLGAGIYDYLPLAKRSLAKVEAIVREEM 64

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E  +P L  A++W ESGR+D  G  M RL DR       G THEE+ T + R  
Sbjct: 65  DAIGGQEFYLPALHPAEIWKESGRWDVMGDNMFRLKDRKGGDYCLGMTHEEIFTAVARDE 124

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR LP  +YQIQ KFRDE RP+ G++R R+F MKDAYSFD+   G   SY     +Y
Sbjct: 125 LRSYRQLPQVWYQIQTKFRDEPRPKSGLLRVRQFTMKDAYSFDVDRAGLDRSYEDQRRAY 184

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF---MDFPIPSENTD 238
            +IF R GL  + ++A SG +GG  S EF+V  + GE  V          +    +    
Sbjct: 185 EKIFTRCGLDFVAVQAHSGSMGGSESSEFMVRTEAGEDLVAACPRCRYAANTETATSRVA 244

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            +         E++  P   T +   E+   S+P
Sbjct: 245 AEADGPGLGAPEKFATPGVVTIEA-LEQAPHSVP 277



 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 105/192 (54%), Gaps = 3/192 (1%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A  A  +++   K  +  P         + +E+GHIF  GTKYS  M AT   A+GK   
Sbjct: 381 AHGATLAELRTVKAGEGCPRCDGTLDVFKALEIGHIFKLGTKYSESMKATVLDAEGKQVP 440

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + MGSYGIG  R++AA IE  HD  GI++P ++APF  +++ +   +   R A E++ A 
Sbjct: 441 IVMGSYGIGVERILAAAIELHHDDNGIVFPMAIAPFHATVLTLGP-EPELRKAAEEVVAA 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G +V +DD  E+ G +F  ADLLG P+++ VG K ++   VE K R  G  E + +
Sbjct: 500 LGKEGVEVLFDDRDERAGVKFKDADLLGIPIRIAVGKKGLAAGNVEWKLRKGGAVELVPV 559

Query: 432 EEVINYASHRFS 443
            EV   A+    
Sbjct: 560 GEVARKAAEAVR 571


>gi|320535781|ref|ZP_08035862.1| prolyl-tRNA synthetase [Treponema phagedenis F0421]
 gi|320147329|gb|EFW38864.1| prolyl-tRNA synthetase [Treponema phagedenis F0421]
          Length = 576

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 103/271 (38%), Positives = 152/271 (56%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P L+E P +A IASH+L+LR GMI +   G++++LPLG ++   +  IIREE
Sbjct: 1   MKMSQMFMPTLREVPSEAVIASHQLLLRAGMIRKIGNGLFAYLPLGLRSFHKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G +E     +   +LW ESGR+D+ G E+LR+ +R ++ ++  PT EE  T + R 
Sbjct: 61  LDAIGCLECKPSVVIPGELWQESGRWDAMGDELLRMKNRLNQDLVVSPTAEEAFTALLRF 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+  P T YQI  K+RDE+RPR+G+MR+REF M DAYSF  T E     Y     +
Sbjct: 121 ELSSYKQFPLTLYQINTKYRDEIRPRYGLMRAREFTMMDAYSFHTTQESLDEVYEHFSQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R GL  IP+RA+SG +GG  S EF+V ++ G+  +             +     
Sbjct: 181 YRKIFARCGLSVIPVRADSGAMGGSGSEEFMVESEVGDDTLILCPKCGYAANVEKAACAP 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           D         Q   P    +    E+L D L
Sbjct: 241 DAKINVQKTAQKPEPIDTPNVKTIEELTDFL 271



 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 64/188 (34%), Positives = 96/188 (51%), Gaps = 5/188 (2%)

Query: 259 TSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             DV   K  D          S +G E+GHIF  G KY+  M+ TF   +GK  Y  MG 
Sbjct: 387 VCDVRTVKAGDRCLHCGAPFYSKKGNELGHIFKLGFKYTKSMNMTFLDENGKQQYPTMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +A+VIE  HD  GI+WP +VAP+   ++ IK      ++A + +Y  L   G
Sbjct: 447 YGIGVDRTLASVIEEHHDEDGIVWPLTVAPYHAVIVPIKYEG-KMKEAADALYTELQTAG 505

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G +F   DL+G P++++VG K +   ++E K R     + ++ +EV  
Sbjct: 506 VEVLLDDRHERPGVKFKDMDLIGIPIRLVVGEKNLP--QIECKLRTEKESKLIAQKEVCA 563

Query: 437 YASHRFSN 444
           +       
Sbjct: 564 FVQKLVQE 571


>gi|147668995|ref|YP_001213813.1| prolyl-tRNA synthetase [Dehalococcoides sp. BAV1]
 gi|189083496|sp|A5FS84|SYP_DEHSB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146269943|gb|ABQ16935.1| prolyl-tRNA synthetase [Dehalococcoides sp. BAV1]
          Length = 569

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 107/252 (42%), Positives = 160/252 (63%), Gaps = 1/252 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +E P DAE  SH+L+LR+GMI Q + G+YS++PL  +++  +  IIR+E
Sbjct: 1   MRYSRLFGKTQREIPSDAETISHQLLLRSGMIAQLTAGVYSFMPLAWRSIQKIETIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G  E+++P LQ  ++W +SGR   +G+ +  L DR D+ ++ GPTHEEV+TD+   
Sbjct: 61  MNKAGCQELAMPVLQPVEIWQQSGREAPFGQTLFHLKDRKDRNLVLGPTHEEVITDLASR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +I+SYR+LP   YQIQ KFRDE RPR G++R REF+MKD YSFD +PEG   SY  M  +
Sbjct: 121 YIQSYRDLPQRLYQIQAKFRDEPRPRGGLIRVREFIMKDMYSFDASPEGLDDSYQTMKQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  ++ R GL+S+ + A+SG IGG  SHEF+++A++GE  +        +   +E   F 
Sbjct: 181 YESVYRRCGLESMVIDADSGAIGGKASHEFMIVAESGEDSIIYCPKCS-YAANAEKAVFK 239

Query: 241 DIISLNSIVEQW 252
                   ++  
Sbjct: 240 KKTLSKETLKDL 251



 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+       + P  +    S RG+EVGHIF  GT  S    A F  A+G  H + MG Y
Sbjct: 379 ADIALAAEGSACPFCDGTFASKRGVEVGHIFKLGTFLSERFGANFTDAEGVSHPIIMGCY 438

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G+G  R++AA IE +HD KGIIWP  +AP+++ +  +   + V R++ EKIY  L     
Sbjct: 439 GMGVGRLLAAAIEQNHDEKGIIWPMPIAPYQVYICGLFLDNPVVRESAEKIYKELEAKSI 498

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V +DD     G +F  ADLLG PL++ +  + +    VE K R     E + L+ ++  
Sbjct: 499 EVLFDDRELTAGVKFNDADLLGIPLRLTISPRNLDKGGVEFKLRRNKESELVPLDSIVER 558

Query: 438 ASHRFSN 444
                 +
Sbjct: 559 VIATIKS 565


>gi|157736342|ref|YP_001489025.1| threonyl-tRNA synthetase [Arcobacter butzleri RM4018]
 gi|157698196|gb|ABV66356.1| threonyl-tRNA synthetase [Arcobacter butzleri RM4018]
          Length = 602

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 156/443 (35%), Gaps = 41/443 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +L+E   RD      +L L T        G+  WLP G +    +  ++ +     G
Sbjct: 197 YTRMLEEAKKRDHRKLGTELELFT-FNDDVGAGLPMWLPKGARLRSKLEHLLYKAHRIRG 255

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  A++W  SG Y +Y + M      +D+     P +      IF++++ SY
Sbjct: 256 YEPVRGPEILKAEMWKISGHYANYKENM-YFTTIDDQEYGIKPMNCVGHIQIFKNNLVSY 314

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP   ++  +  R E+     G+ R REF   D++ F    +  +  +  +       
Sbjct: 315 KELPKKLFEYGVVHRHEMSGAMHGLFRVREFTQDDSHIFCTQDQIKQVIFEVL------- 367

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                        ++     D  +E  V   T   +      F +          D+   
Sbjct: 368 ----------EFVDTLLKVFDFKYEIEV--STKPEKAIGDDIFWEKTTKGIMDALDENNI 415

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D++    +     +++     F        +  +  
Sbjct: 416 SYGIDEGGGAFYGPKIDI---KILDAIGRKWQCGTVQVDMNLPSRF--------NVEYIN 464

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G+      +    +G+      ++            +       + + +        +
Sbjct: 465 EKGEKEQPVMIHRAILGSFERFIGILTEHC------AGEFPFIIAPTQVILVPIADSHVE 518

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++   L +   D    +M E +  +  +A+    P+ V++G + V +  V +++R T
Sbjct: 519 YAKELQKALLENDLDSEIYNMNESLNKRIRMAEKQRVPMIVVIGDEEVENKTVALRNRRT 578

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
             + +MS  E I+  +   + +R
Sbjct: 579 REQSNMSKNEFISMLNEIKNGSR 601


>gi|239928618|ref|ZP_04685571.1| prolyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291436943|ref|ZP_06576333.1| prolyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291339838|gb|EFE66794.1| prolyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 567

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 104/239 (43%), Positives = 145/239 (60%), Gaps = 1/239 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + GI++WLPLG+K L NV  I+REE 
Sbjct: 8   RMSQLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGIWTWLPLGKKVLANVERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR+D YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVLLPALLPREPYEATGRWDEYGPELFRLQDRKGGDYLLGPTHEEIFTLLVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ KFRDE RPR G++R REFLMKD+YSFDL  EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQTKFRDEARPRAGILRGREFLMKDSYSFDLEDEGLARSYALHRQAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            ++F RLGL      A +G +GG  S EF+  A+ GE   F      DF   +E   ++
Sbjct: 188 QKVFERLGLDYRICAATAGAMGGSKSEEFLAPAEAGE-DTFADCPNCDFAANTEAIAYE 245



 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 88/173 (50%), Gaps = 6/173 (3%)

Query: 270 SLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             P         R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R VAA
Sbjct: 396 PCPRCGTGLKLDRAIEIGHIFQLGRKYTDALKLDVLGQNGKPVRVTMGSYGIGVSRAVAA 455

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GE 386
           + E + D KG+ WP  VAP  +    + A   +  +    +  +L+  G  V  DD  G 
Sbjct: 456 LAEQTADDKGLCWPQEVAPADVH--VVAAGKALQTELALDVSEKLAAAGVRVLVDDRPGV 513

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             G +F  ++L+G P  ++ G +  ++  VE+K R TG RE++++EE I   +
Sbjct: 514 SPGVKFTDSELIGVPRILVAGRR-AAEGVVELKDRRTGEREELTVEEAIARLT 565


>gi|294786915|ref|ZP_06752169.1| threonine--tRNA ligase [Parascardovia denticolens F0305]
 gi|315226550|ref|ZP_07868338.1| threonine--tRNA ligase [Parascardovia denticolens DSM 10105]
 gi|294485748|gb|EFG33382.1| threonine--tRNA ligase [Parascardovia denticolens F0305]
 gi|315120682|gb|EFT83814.1| threonine--tRNA ligase [Parascardovia denticolens DSM 10105]
          Length = 687

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 65/462 (14%), Positives = 142/462 (30%), Gaps = 51/462 (11%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+   Y   + +   RD      ++ L +    +   G+  + P G   ++ +    R +
Sbjct: 243 MKA--YLARLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMKEYSRLQ 299

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGP 108
             +     +  P +    L+  SG    Y   M                 R        P
Sbjct: 300 HRKNHYSFVQTPHITKGGLYETSGHLQWYKDGMYPPMRLDEERDENGNVIREGFDYYLKP 359

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTP 167
            +  +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    
Sbjct: 360 MNCPMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHIYCTRE 419

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +        +    L++    GL    +   +                  E +   S + 
Sbjct: 420 QMRDEL-KSLLNFVLQLLKDFGLNDFYLELST----------------KDEHKFVGSDEI 462

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            +    +      +            A Y       + +  D+L    +VS   ++    
Sbjct: 463 WEEATKTLADVAKESGLELVDDPGGAAFYGPKI---SVQARDALGRTWQVSTIQLD---- 515

Query: 288 FYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           F    ++       +  ADG       +     G++    A++    +     +P  +AP
Sbjct: 516 FNLPERF----QLEYIAADGSRQRPVMIHRALFGSIERFFAILL---EHYAGAFPAWLAP 568

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            ++  + +        D  +++  RL +       D   ++ G +   A     P  +IV
Sbjct: 569 TQVLGVPVADSS---LDYLKEVLDRLDENLVRTELDASDDRFGKKIRNASKSKVPFILIV 625

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           G +      V  + R       +  ++ I + +    ++  V
Sbjct: 626 GDEDREKGAVSFRFRDGSQLNGVPADQAIAWITEAIDSHAQV 667


>gi|203288149|ref|YP_002223164.1| threonyl-tRNA synthetase [Borrelia recurrentis A1]
 gi|238690577|sp|B5RQ59|SYT_BORRA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|201085369|gb|ACH94943.1| threonyl-tRNA synthetase [Borrelia recurrentis A1]
          Length = 583

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 158/448 (35%), Gaps = 39/448 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L + +E   RD      +L L +    +   G+  + P G +    +    REE  +
Sbjct: 172 KAYLKLQEEIKKRDHRKLGRELNLFSVH-DEIGPGLIFFHPHGARIRALIENFWREEHFK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y + M    + +       P +      I+ +   
Sbjct: 231 NGYDILFTPHIGKSWLWETSGHLDFYKESMFEKIEMDRSDYYVKPMNCPFHIAIYNTDKH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G MR R F   DA+      + +     ++    +
Sbjct: 291 SYRDLPFRWAELGTVYRYEKIGAIHGTMRVRGFTQDDAHIICTYEQVNFE-VREVLRFAI 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++++ G  ++     + P                  +     D     +        D 
Sbjct: 350 DMWNKFGFTNLKAYLSTKP-----------------EKAVGDDDDWQMAVKVLEKALIDF 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A Y    D+   K+ DSL    +++    +    F    ++ +  +A  
Sbjct: 393 NIDFDIDEGGGAFYGPKIDL---KIIDSLGRAWQMTTIQFD----FNLPVRFKMTYTAE- 444

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +     +    +G++     ++   + G   +W           + I   + +  
Sbjct: 445 --DGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPVW------LAPLQVVIIPVNSIVE 496

Query: 363 DACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   ++ +R    G  + +D+    ++ ++         P   I+G + V + K+ I+ R
Sbjct: 497 EYALEVLSRFQNEGIRIKFDNYYNMRMNAKIRQYQSKKVPYMFIIGEREVVEGKISIRTR 556

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
                  + L+E + +   + SN + +L
Sbjct: 557 TNEQINGLELKEALEFVKLKISN-KEIL 583


>gi|156086662|ref|XP_001610740.1| threonyl-tRNA synthetase [Babesia bovis T2Bo]
 gi|154797993|gb|EDO07172.1| threonyl-tRNA synthetase, putative [Babesia bovis]
          Length = 736

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 153/446 (34%), Gaps = 35/446 (7%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   +++    D  +    L L     + HS G   WLP G K  + +   +RE    
Sbjct: 312 KAYERRIEDAKANDHRLLGTTLNLFH-FDNIHSPGSCFWLPNGAKIYNRLVDFMRENYRL 370

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + S +LW  SG YD+Y + M      ++        +      +F+    
Sbjct: 371 RGYQEVITPNIYSCELWKTSGHYDNYKENMYMFT-VDEAEWGMKGMNCPGHCLMFKHMNP 429

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  F    +  R+EL     G+ R R F   DA+ F    + S    +      L
Sbjct: 430 SYRQLPLRFADFGVLHRNELTGSLSGLTRVRRFQQDDAHIFCTPEQISAEVLSM-----L 484

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +    +                  + E+     T   +     +  +          +  
Sbjct: 485 KFIDDVYSLF--------------NFEYNFKLSTKPAKALGDDELWNKAEAGLQDALEKC 530

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSA 300
               ++     A Y    DV    L DSL    +     ++      F  G +       
Sbjct: 531 GRPWTLNPGDGAFYGPKIDVI---LLDSLEREHQCGTVQLDFNLPIRFNLGYRDKDSEDN 587

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T     G    V +     G++    A++     GK   W   ++P +++++ I      
Sbjct: 588 T-DCKRGYSRPVIVHRAIFGSLERFIAIVIEHMKGKLPFW---LSPTQVAVLPISDKH-- 641

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   KIY +L  +G + + D     +  +  +     +   +I+G + V    V ++ 
Sbjct: 642 -LDYANKIYRKLLHLGYNCYVDSSANTMNKKIKLNQAQRYNYMLILGDREVETETVSVRA 700

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
             +   E ++LE++    +    + +
Sbjct: 701 MDSQDNEVLTLEQLYAKLADEAESYK 726


>gi|254368866|ref|ZP_04984879.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157121787|gb|EDO65957.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 565

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 113/333 (33%), Positives = 187/333 (56%), Gaps = 6/333 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E     
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDYAANIELATYA 239

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             D    ++  + +E+   P   T +   +++   + +  +        G+ F    +  
Sbjct: 240 KPDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIKDAGGNFFALVIRGD 299

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             ++ T      +       +       +  A 
Sbjct: 300 HELNETKINKLDQIIAPYTLATKEEIFSIFNAN 332



 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 68/183 (37%), Positives = 102/183 (55%), Gaps = 3/183 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVG 376
           G G  RV+AA IE SHD  GIIWP+S+AP++++++ I        ++  +K+   L   G
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSAKVKEVADKLCQDLLGDG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I 
Sbjct: 503 IDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITIAELIK 562

Query: 437 YAS 439
              
Sbjct: 563 ILK 565


>gi|17227831|ref|NP_484379.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|17129680|dbj|BAB72293.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 615

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 153/442 (34%), Gaps = 39/442 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L      Q   G+  W P G      +   +++EQ + G + + 
Sbjct: 203 EEALRRDHRKLGKELGLFI-FSEQVGPGLPLWTPKGTLLRSTLEQFLQQEQLKRGYLPVV 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  L   ++ A       +  P +      I++S ++S
Sbjct: 262 TPHIARVDLFKTSGHWQKYKEDMFPLMAEDEAAAAIEQGFVLKPMNCPFHIQIYKSELRS 321

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    +    +R E     G +        D     +TPE   + +  +    L +
Sbjct: 322 YRELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPEQLDNEFLNVVDLILSV 381

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F  L LK+   R                  D    +   S +  +    +     + +  
Sbjct: 382 FKSLQLKNFKARLS--------------FRDPASDKYIGSDEVWNKAEGAIRRAVEQLGM 427

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +       A Y    D       D+L    ++    ++                  +  
Sbjct: 428 EHFEGIGEAAFYGPKLDFI---FSDALEREWQLGTVQVDYNLP--------ERFDLEYVA 476

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +     G++  +  ++    +     +P  +AP +  L+ +    +   D
Sbjct: 477 EDGTRKRPVMIHRAPFGSLERLIGILI---EEYAGDFPLWLAPVQARLLPVG---EAQLD 530

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + + A+L  +G     D  G+++G     A+    P+  +VG+K V  + + I+ R +
Sbjct: 531 FTKDVVAKLRSLGIRAEVDTSGDRLGKLIRNAEKDKIPVMAVVGAKEVETNSLSIRTRAS 590

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    + ++EV+       +N 
Sbjct: 591 GELGAIPVDEVVQKMKDAIANY 612


>gi|302558076|ref|ZP_07310418.1| prolyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
 gi|302475694|gb|EFL38787.1| prolyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
          Length = 566

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 103/239 (43%), Positives = 145/239 (60%), Gaps = 1/239 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + GI++WLPLG+K L NV  I+REE 
Sbjct: 8   RMSQLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGIWTWLPLGKKVLANVERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR+D YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVLLPALLPREPYEATGRWDEYGPELFRLQDRKGGDYLLGPTHEEIFTLMVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REFLMKD+YSFDL  EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQSKYRDEARPRAGILRGREFLMKDSYSFDLEDEGLAKSYALHRAAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            ++F RLGL      A +G +GG  S EF+  A+ GE   F      DF   +E   ++
Sbjct: 188 QKVFERLGLDYRICAATAGAMGGSKSEEFLAPAEAGE-DTFADCPNCDFAANTEAISYE 245



 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 92/177 (51%), Gaps = 6/177 (3%)

Query: 266 KLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           +  D  P+        R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R
Sbjct: 392 QEGDPCPKCGTGLRLDRAIEIGHIFQLGRKYADALKLDVLGQNGKPVRVTMGSYGIGVSR 451

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            VAA+ E + D KG+ WP  VAP  +    + A   +  +   ++  +LS  G  V  DD
Sbjct: 452 AVAALAEQTADDKGLCWPAEVAPADVH--VVAAGKALQTELALEVSEKLSAAGLRVLVDD 509

Query: 384 M-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             G   G +F  ++L+G P  ++ G +  ++  VE+K R TG RE++++EE +   +
Sbjct: 510 RPGVSPGVKFTDSELIGVPQILVAGRR-AAEGVVELKDRRTGEREELTIEEALTRLT 565


>gi|239917575|ref|YP_002957133.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Micrococcus
           luteus NCTC 2665]
 gi|281413939|ref|ZP_06245681.1| threonyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
 gi|259516574|sp|C5CBI2|SYT_MICLC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239838782|gb|ACS30579.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Micrococcus
           luteus NCTC 2665]
          Length = 672

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 67/456 (14%), Positives = 128/456 (28%), Gaps = 49/456 (10%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L +   RD      +L L +    +   G+  + P G      +    R     
Sbjct: 247 KAYQERLAEAERRDHRKLGAELDLFS-FPDELGSGLPVFHPRGGIIRKEMEDYSRRRHTE 305

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-------------RNDKAMIYGPTH 110
            G   +  P +    L+  SG  D Y   M                  R  +     P +
Sbjct: 306 AGYEFVYTPHITKQHLYEVSGHLDWYANGMFPPMHIDEVRDPETGEITRQGQNYYLKPMN 365

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
             +   I+RS  +SYR LP   ++    +R E      G+ R R     DA+ +    + 
Sbjct: 366 CPMHNLIYRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYCTREQM 425

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
            +          L +    GL    +   +                    +   S +  +
Sbjct: 426 KEEL-TTTLNFVLDLLKDYGLNDFHLELST----------------KDPEKFVGSDEIWE 468

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
               +     +             A Y       + +  D++    ++S   ++    F 
Sbjct: 469 EATRTLAEVAEASGLQLVPDPGGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FN 521

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
              ++ L   A       +   V +     G++     V+   + G    W        I
Sbjct: 522 LPERFDLEYQAA---DGTRQRPVMIHRALFGSIERFLGVLTEHYAGAFPAWLAPEQVVAI 578

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +       +   D  + + A+L   G     DD  ++   +   A     P  +I G +
Sbjct: 579 PVA------EAFNDYLDDVVAKLRAEGIRARLDDSSDRFPKKIRTAAKEKAPFVLIAGGE 632

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
                 V  + R       + +EE I          
Sbjct: 633 DREAGAVSFRFRDGTQDNGVPVEEAIERIVKAVRER 668


>gi|117928565|ref|YP_873116.1| threonyl-tRNA synthetase [Acidothermus cellulolyticus 11B]
 gi|117649028|gb|ABK53130.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Acidothermus
           cellulolyticus 11B]
          Length = 685

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/446 (15%), Positives = 143/446 (32%), Gaps = 37/446 (8%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E  R D      +L L +    +   G+  + P G      +    R +  + G
Sbjct: 273 YLDLLREAERRDHRRLGVELDLFS-FPDEIGSGLAVFHPKGGIIRREMENYSRLQHEKAG 331

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKS 124
            + ++ P +   DL+  SG   S+ + M    +          P +  +   I+RS  +S
Sbjct: 332 YLFVNTPHITKHDLFATSGHLQSFAEGMFPPFELDGGVTYYLKPMNCPMHILIYRSRGRS 391

Query: 125 YRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP   ++    +R E      G+ R+R F   DA+ F    +        +    L 
Sbjct: 392 YRELPMRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIFCTREQMGAEL-RDLLRFVLD 450

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    GL    +   +     D S +F                       +      D  
Sbjct: 451 LLRDYGLTDFYLELST----RDDSPKF-----------VGDPADWAQATEALEAAARDSG 495

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y       + +  D++  + ++S   ++    F             ++
Sbjct: 496 LELVPDPGGAAYYGPKI---SVQARDAIGRSWQISTIQLD----FNLP----KRFDLEYQ 544

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            ADG       +     G++     V+    +     +P  +AP +   I +   D    
Sbjct: 545 AADGTRQRPVMIHRALFGSIERFFGVLL---EHYAGAFPPWLAPVQAVGIPV--SDAHVP 599

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              + + A L   G     DD  +++  +   A     P  +I G   ++   V  ++R 
Sbjct: 600 YLRDTVGASLRAAGIRYEVDDSDDRMQKKIRNAAKQKIPYLLIAGDDDIARHAVSFRYRD 659

Query: 423 TGIREDMSLEEVINYASHRFSNNRPV 448
              +  + + + +            V
Sbjct: 660 GSQKNGVPIADAVAEIRDAIDRRIQV 685


>gi|227544954|ref|ZP_03975003.1| prolyl-tRNA synthetase [Lactobacillus reuteri CF48-3A]
 gi|300910015|ref|ZP_07127475.1| proline--tRNA ligase [Lactobacillus reuteri SD2112]
 gi|227185065|gb|EEI65136.1| prolyl-tRNA synthetase [Lactobacillus reuteri CF48-3A]
 gi|300892663|gb|EFK86023.1| proline--tRNA ligase [Lactobacillus reuteri SD2112]
          Length = 577

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 115/271 (42%), Positives = 159/271 (58%), Gaps = 6/271 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +E P DAE  SHK+M+R G I+Q S G++S+LPL  + +  V  IIR+E
Sbjct: 1   MKQSKVLIPTKKEAPSDAEALSHKMMIRAGYIYQVSAGVWSYLPLAYRVIRKVENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM +P L  ADLW ESGRY+SYG  + +L DR D+  I GPTHEE  T++ R 
Sbjct: 61  MDKAGAVEMLMPGLLPADLWKESGRYESYGDNLFKLKDRRDRDFILGPTHEETFTEVLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE RPR+G++R +EF M D YSF    EG   +YN    +
Sbjct: 121 SIKSYKKLPLVVYQLQDKFRDEDRPRYGILRGKEFEMLDGYSFSADQEGLDEAYNNQAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    + A+SG +GG  S EF   A+ GE  +  +    D+    E  +  
Sbjct: 181 YRNIFDRIGLNYKVILADSGTMGGKNSQEFSAPAEVGEDIIAYTDG--DYAANIEKAESK 238

Query: 241 DII----SLNSIVEQWTAPYAATSDVHNEKL 267
                  +  + +E+   P A T D   E L
Sbjct: 239 FTGVQQTAAPAPIEKKATPGAHTVDEAAESL 269



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 107/190 (56%), Gaps = 5/190 (2%)

Query: 261 DVHNEKLFDSLPENK-RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           D  N K  +  P+ K      GIE+GHIF  GT YS  + A    ++G+   V MGSYGI
Sbjct: 387 DFRNVKEGEIAPDGKPLKFTPGIEIGHIFKLGTHYSSKLGAQVLDSNGRLTDVIMGSYGI 446

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R+++AV E + D  G++WP+S+APF + +I + A  +      +KI  +L++ G +V
Sbjct: 447 GVTRLLSAVAEQNADENGLVWPNSIAPFDVHVIPVNAKKEDQMAMADKIDQQLTEAGYEV 506

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY-- 437
             DD  E+ G +FA +DL+G P++V VG K   D  VEIK R TG   ++  EE++N   
Sbjct: 507 LVDDRKERAGVKFADSDLIGIPIRVTVGKK-AQDGIVEIKIRKTGETVEVKQEELVNTVG 565

Query: 438 -ASHRFSNNR 446
               + +  +
Sbjct: 566 ILLKQLNEEK 575


>gi|145224625|ref|YP_001135303.1| prolyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
 gi|145217111|gb|ABP46515.1| prolyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
          Length = 588

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 100/250 (40%), Positives = 146/250 (58%), Gaps = 1/250 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G +     G+YSWLPLG K L  +  I+R E 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYVRPVGPGLYSWLPLGLKVLRKIEHIVRSEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L     +  + R+  YG  + RL DR D   + GPTHEE+ T   +  
Sbjct: 64  DAIGGQEILFPALLPRAPYETTNRWTEYGDTLFRLQDRRDNDYLLGPTHEEMFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFD+  +G K++Y+    +Y
Sbjct: 124 YSSYKDFPLRLYQIQNKYRDEARPRAGILRGREFLMKDSYSFDVDDDGLKNAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFD 240
            RIF RL ++ + + A SG +GG  S EF+  ++ GE   V C++      + +  T   
Sbjct: 184 QRIFDRLKVRYVIVSAVSGAMGGSASEEFLAESEVGEDTFVRCAQSGYAANVEAVVTTAP 243

Query: 241 DIISLNSIVE 250
           D I L+ + E
Sbjct: 244 DPIPLDGLPE 253



 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/176 (36%), Positives = 94/176 (53%), Gaps = 4/176 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     V+ARGIE+GH+F  G KY+   +A   G +GK   + MG
Sbjct: 399 GTIEAAEVREGDPSPDGAGPLVAARGIEIGHVFQLGRKYADAFNADVLGENGKPVRLTMG 458

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA + E  HD  G+ WP SVAPF +  + I   D   R    ++   L + 
Sbjct: 459 SYGIGVSRLVAVIAEQHHDELGLRWPGSVAPFAVH-VVIANKDAEARAGATELATALDRA 517

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           G DV  DD     G +F  A+LLG P  V+VG +  +D  VE++ R +G + ++ +
Sbjct: 518 GADVLLDDRTASPGVKFKDAELLGVPWIVVVG-RGWADGVVELRDRFSGEKREIPV 572


>gi|152965404|ref|YP_001361188.1| prolyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
 gi|189083501|sp|A6W7Y5|SYP_KINRD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|151359921|gb|ABS02924.1| prolyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
          Length = 586

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 98/237 (41%), Positives = 138/237 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  FL  L+E+P +AE+ASHKL++R G + + + GIY+WLPLG K L  V  ++REE
Sbjct: 3   MRMSTLFLRTLREDPVEAEVASHKLLVRAGYVRRAAPGIYTWLPLGLKVLRKVEQVVREE 62

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+  P L   + +  + R+  YG  + +L DR     +  PTHEE+ T + + 
Sbjct: 63  MDAAGAQEVHFPALLPREPYEATNRWSDYGDGIFKLKDRKGADYLLAPTHEEMFTLLVKD 122

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++LP + YQIQ K+RDE RPR G++R REF MKD+YSFD+   G + SY     +
Sbjct: 123 LYSSYKDLPLSIYQIQTKYRDEARPRAGIIRGREFTMKDSYSFDVDDAGLERSYELHRQA 182

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y+RIF RLGL  + + A SG +GG  S EF+     GE     S         +  T
Sbjct: 183 YVRIFERLGLDFVIVSAVSGAMGGSRSEEFLHPTAIGEDTFVRSPGGYAANAEAVTT 239



 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 5/189 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +    K  D  P+       ARGIE+ HIF  G +++  +       +GK   V MG
Sbjct: 399 GFVEAAEVKAGDPAPDGSGPLELARGIEIAHIFALGRRFAQALDLKVLDENGKQVVVTMG 458

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R +A V E +HD KG++WP ++AP  + ++     D       E++   L   
Sbjct: 459 SYGVGVTRALACVAEGNHDEKGLVWPRALAPADVHVVATG-KDPEIFATAERLAGELVAQ 517

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD      G +F  A+L+G P  ++VG K +++  VE+K R +G  E ++L++ 
Sbjct: 518 GLEVLYDDRPKVSPGVKFKDAELIGVPTILVVG-KGLAEGLVELKDRRSGDSEQVALDDA 576

Query: 435 INYASHRFS 443
           ++  +    
Sbjct: 577 VSRVATAVR 585


>gi|78060370|ref|YP_366945.1| threonyl-tRNA synthetase, class IIA [Burkholderia sp. 383]
 gi|77964920|gb|ABB06301.1| Threonyl-tRNA synthetase, class IIa [Burkholderia sp. 383]
          Length = 477

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 84/437 (19%), Positives = 149/437 (34%), Gaps = 52/437 (11%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  I  +KL L      Q   G+  W P G      +   +R    R G  E+  P L +
Sbjct: 71  DHRILGNKLGLF--HQQQEGPGMVFWHPRGWALYRVLEDYVRMRMRRAGFREIRTPQLLA 128

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKA------------MIYGPTHEEVMTDIFRSHIKS 124
             LW  SG +D +G +M  L DR+               +   P        +F   ++S
Sbjct: 129 RSLWERSGHWDKFGSQMYALPDRSPIEPSADVDHDDALALCLKPMSCPCHVQVFNQGLRS 188

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  + +     RDE      G+ R+R F+  DA+ F  T    ++   +       
Sbjct: 189 YRELPIRYSEFGACHRDEPSGSLEGLKRTRAFVQDDAHVFC-TKSQIENEVARFCNLLRA 247

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++  LG  S+ +   + P+                      +   D    S         
Sbjct: 248 VYADLGFSSVTVALATRPMQR-----------------AGEEAVWDQAEASLAAAARAAG 290

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    +    KL D      +     ++    F    +    ++A F 
Sbjct: 291 LEFELSEGEGAFYGPKLEF---KLADRRGREWQCGTIQLD----FVLPGR----LNAHFI 339

Query: 304 G-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              + ++  V +    +G+M    A++   ++G   +W           I + +      
Sbjct: 340 NAENVQETPVMLHHAVLGSMERFIAILLEHYEGWLPVW------LAPEQIVVASISDAHA 393

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++   L   G  V  D   E++  +   A  L  P  + VG++   +  V I++R 
Sbjct: 394 PYAMRVVQMLDDAGLRVVADCRAERLERKIIDARKLQIPFLIAVGARDERNGTVSIRNR- 452

Query: 423 TGIREDMSLEEVINYAS 439
            G +  + L+E I   S
Sbjct: 453 NGDQVTLPLDEAITVLS 469


>gi|89256041|ref|YP_513403.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314517|ref|YP_763240.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502051|ref|YP_001428116.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010208|ref|ZP_02275139.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|290953930|ref|ZP_06558551.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312679|ref|ZP_06803424.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|114152197|sp|Q2A4E9|SYP_FRATH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|122325457|sp|Q0BMT1|SYP_FRATO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980124|sp|A7NB07|SYP_FRATF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|89143872|emb|CAJ79090.1| Prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129416|gb|ABI82603.1| proline--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156252654|gb|ABU61160.1| prolyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 565

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 113/333 (33%), Positives = 187/333 (56%), Gaps = 6/333 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E     
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDYAANIELATYA 239

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             D    ++  + +E+   P   T +   +++   + +  +        G+ F    +  
Sbjct: 240 KPDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIKDAGGNFFALVIRGD 299

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             ++ T      +       +       +  A 
Sbjct: 300 HELNETKINKLDQIIAPYTLATKEEIFSIFNAN 332



 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/183 (37%), Positives = 102/183 (55%), Gaps = 3/183 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVG 376
           G G  RV+AA IE SHD  GIIWP+S+AP++++++ I        ++  +K+   L   G
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKVKEVADKLCQDLLGDG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I 
Sbjct: 503 IDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITIAELIK 562

Query: 437 YAS 439
              
Sbjct: 563 LLK 565


>gi|219685509|ref|ZP_03540326.1| threonine--tRNA ligase [Borrelia garinii Far04]
 gi|219672908|gb|EED29930.1| threonine--tRNA ligase [Borrelia garinii Far04]
          Length = 581

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 150/443 (33%), Gaps = 37/443 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L + +E   R+      +L L +    +   G+  + P G K    +    REE ++
Sbjct: 172 RSYLNLREEIKKRNHRKLGKELDLFSIH-EEIGPGLIFFHPNGAKIRALIEDFWREEHSK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +  + LW  SG  D Y   M    + +       P +      I+ +   
Sbjct: 231 NGYDILFTPHVGKSWLWQTSGHLDFYKDSMFEKIEMDKSDYYLKPMNCPFHIAIYNTGKH 290

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LPF + ++   +R E      G+MR+R F   DA+      +       ++    +
Sbjct: 291 SYRDLPFRWAELGTVYRYEKIGALHGMMRARGFTQDDAHIICTHSQVVDE-IKEVLRFAI 349

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G  S+     + P                  +   +    +  +        + 
Sbjct: 350 YMWSKFGFSSLKAYLSTKP-----------------DKSVGNDYDWEMSLKVLEEALSNF 392

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I +   A Y    D+   K+ DSL    ++S    +    F    ++++  +A  
Sbjct: 393 EVPYEIDKGGGAFYGPKIDL---KIVDSLEREWQMSTIQFD----FNLPERFNMTYTAE- 444

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +     +    +G++     ++   + G   +W             I   +    
Sbjct: 445 --DGKEKRPFMIHRALLGSIERFFGILVEHYGGAFPLW------LSPVQAVIIPVNNTVE 496

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+  +    G  +  D+   ++ ++         P   I+G +   + K+ I+ R 
Sbjct: 497 DYTIKVLNKFKNAGIRIKLDNSSSRMNAKIREYQAKKIPYMFIIGEREAIEEKISIRTRT 556

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                 + L+E +     +  + 
Sbjct: 557 NEQISGIELDEALKLILLKVRDK 579


>gi|302876555|ref|YP_003845188.1| prolyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|307687227|ref|ZP_07629673.1| prolyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|302579412|gb|ADL53424.1| prolyl-tRNA synthetase [Clostridium cellulovorans 743B]
          Length = 566

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 118/265 (44%), Positives = 162/265 (61%), Gaps = 1/265 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  ++E P +AEI+SH+LMLR G++ + + G+Y+++P+G KAL  V  IIR+E
Sbjct: 1   MKLSKALMLTMREVPAEAEISSHQLMLRAGLMRKMASGVYNYMPMGLKALKKVEDIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E     L  A+LW ESGR+D+ G EM RL DRND+    GPTHEEV TDI R+
Sbjct: 61  MDKAGAQEFLASALIPAELWKESGRWDTMGPEMFRLKDRNDRDFCLGPTHEEVFTDIARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ K+RDE RPRFGVMRSREF+MKDAYSFD   EG   SYN M+ +
Sbjct: 121 EIKSYKQLPITLYQIQTKYRDERRPRFGVMRSREFVMKDAYSFDKDSEGLDISYNAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R  ++     A+SG +GG  S EF+V ++ GE  +       D+    E +   
Sbjct: 181 YKNIFFRCDIECKAAEADSGAMGGSGSAEFMVKSEVGEDDIVFCSAC-DYAANIEKSPAT 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
             +     ++     +   +    E
Sbjct: 240 AEVMKKEELKNLEKIHTPNAKTIEE 264



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/208 (35%), Positives = 105/208 (50%), Gaps = 3/208 (1%)

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSL 296
            ++     + V           D       +  P+        RGIEVGHIF  GTKYS 
Sbjct: 359 ANETDYHYTNVNYNRDFTGKVGDFRKVTEGEKCPKCGAPINIARGIEVGHIFKLGTKYSE 418

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            M+A F   DG      MG YGIG  R +AAVIE  +D  GIIWP  VAP+++ ++    
Sbjct: 419 SMNAVFTDQDGTQKPFIMGCYGIGVNRTLAAVIEQHNDENGIIWPLEVAPYQVIVVPAVF 478

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D+V     E++Y  L  +G DV  DD  E+ G +F  ADLLG P+++ VG K +++ +V
Sbjct: 479 KDEVQMKKAEELYDALKAIGVDVILDDRNERAGIKFKDADLLGIPMRITVGKK-IAEGEV 537

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K R +   E ++ ++VI+     F  
Sbjct: 538 EFKLRSSADLEVIAYDKVIDRVKEEFKK 565


>gi|205356549|ref|ZP_03223312.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205345554|gb|EDZ32194.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 510

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 151/444 (34%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L T    +   G+  WL  G +    +  ++ +   
Sbjct: 102 LKEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHR 160

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S +
Sbjct: 161 LRGYEPVRGPELLKADAWKISGHYANYKENM-YFTQIDEQEYGIKPMNCVGHIKIYQSDV 219

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++    
Sbjct: 220 RSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFV 278

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +                               T   +     +  +    +     D+
Sbjct: 279 DNLMKLFDFSYEMEI------------------STKPEKAIGDDEIWEIATKALKEALDE 320

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D+L    +     ++    F   +++       
Sbjct: 321 QGLKYGIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPSRF----KLE 369

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +D +      +    +G+      ++            +       + + I    + 
Sbjct: 370 YTDSDNEKKQPVMLHRAILGSFERFIGILTEHC------AGEFPFFIAPTAVGIVPIGEA 423

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V ++ 
Sbjct: 424 HIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALRD 483

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    ++++SL+E I     + S 
Sbjct: 484 RRAKEQKNLSLDEFIKLVKEKMSE 507


>gi|45656749|ref|YP_000835.1| prolyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|81830828|sp|Q72U06|SYP_LEPIC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|45599985|gb|AAS69472.1| prolyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 576

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 159/239 (66%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SKY LP  +ENP DA +ASH+LM+R G++ + S G+Y +LPLG K L  +  I+REE
Sbjct: 1   MKASKYILPTEKENPADAVVASHRLMIRAGLVRKSSAGLYFYLPLGLKVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N TGA+E  +P L  +D W +SGR+ + GKEM R+ DR+D +   GPTHEE  + + + 
Sbjct: 61  MNSTGALEFDLPILTPSDFWEQSGRWSAMGKEMFRIQDRHDLSYALGPTHEESFSFLLKP 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPRFGV+RSREF+MKDAYSF +       +Y  M V+
Sbjct: 121 LLKSYKDLPVNVYQIQTKFRDEIRPRFGVIRSREFIMKDAYSFHIDDSSLDDTYQAMRVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y +IF R GLK+IP++A+SG +GG  S EF+V++  GE  +        +   SE T  
Sbjct: 181 YRKIFDRCGLKTIPVQADSGSMGGSASEEFMVVSPIGEETLLLCNSC-GYSSNSEKTPL 238



 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 69/256 (26%), Positives = 112/256 (43%), Gaps = 13/256 (5%)

Query: 197 AESGPIGGDLSHE------FIVLADTGETQVFCSKDFMDFPIP-SENTDFDDIISLNSIV 249
           A+S P+      E      FI      +         +    P    +  +D  +   I+
Sbjct: 312 ADSEPMTDLEIRELGLIPGFISPIAPNDKIKVLYDRSLQKDFPYVVGSSKEDFHTQGFIL 371

Query: 250 EQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           E+  +     +DV   +  D  P       + +GIEVGHIF  G KY+          +G
Sbjct: 372 EKEISGLPEFADVALAREGDLCPNCSSPLKAEKGIEVGHIFKLGDKYTKAFGIQVLDQNG 431

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K   +  G YGIG  R +A VIE  +D KGI WP S+APF++SL++I   +       E+
Sbjct: 432 KSKTLTTGCYGIGVNRTMATVIEQCNDEKGIFWPISIAPFEVSLVSIVKGEDQYSKI-EE 490

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            Y  L   G +VFWDD     G +   ++L+GFP+++ +G KF    ++ I +R     +
Sbjct: 491 FYNVLINEGIEVFWDDRDLGPGFKLKDSELIGFPIRITIGKKFFESGEISIYNRKKDQED 550

Query: 428 DM---SLEEVINYASH 440
                  ++++     
Sbjct: 551 SFVFSGFDDLVARVES 566


>gi|325000692|ref|ZP_08121804.1| threonyl-tRNA synthetase [Pseudonocardia sp. P1]
          Length = 682

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/453 (15%), Positives = 133/453 (29%), Gaps = 47/453 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  + P G      +  + RE     G
Sbjct: 251 YLERVAEAERRDHRRLGSELDLFS-FPDEIGSGLPVFHPKGGVVRKELEDLSRERHAAAG 309

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              +  P      L+  SG  D Y   M                 R        P +  +
Sbjct: 310 YEFVYTPHATKGQLFELSGHLDWYADGMYPPMQLDAEYDAEGQLKRPAVDYYLKPMNCPM 369

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +    
Sbjct: 370 HNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTRDQMQDE 429

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    L +    GL    +   +                        S +  +   
Sbjct: 430 -IRSLLQFVLDLLRDYGLDDFYLELSTRNPEKS----------------IGSDELWEEAT 472

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +      +            A YA      + +  D++    ++S   +++        
Sbjct: 473 DALREAAGNFGLELRDDPGGAAFYAPKI---SVQARDAIGRYWQMSTIQVDL----MLPD 525

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           ++ L  +A   G   +   V +     G++     V+   + G    W   V    I + 
Sbjct: 526 RFELEYTA---GDGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPVT 582

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                     D   +I ARL   G  +  D   +++  +     L   P  ++ G + V 
Sbjct: 583 ------DTQEDYVREIAARLRAEGIRIDVDAGDDRMQKKIRTHTLQKVPFLLLAGGRDVE 636

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              V  + R       + +++ +        + 
Sbjct: 637 AGAVSFRFRDGSQTNGVPVDDAVRSIVAWVRSR 669


>gi|71892071|ref|YP_277801.1| prolyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|114152172|sp|Q493B4|SYP_BLOPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71796177|gb|AAZ40928.1| prolyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 581

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 102/222 (45%), Positives = 149/222 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P++ +  SH+LMLR G+I Q S G+Y+WLP G + L  +  IIREE
Sbjct: 1   MRTSQYLLATLKEAPKNCKAISHQLMLRAGLIRQVSSGLYTWLPTGLRVLRKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GAIE+++P +Q A LW +SGR+  YG E+LR  +RN++  + GPTHEE++++I   
Sbjct: 61  MSKIGAIEIAMPIVQPARLWKKSGRWTGYGTELLRFKNRNNQEFVLGPTHEEMVSEIICK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
               Y+  P   YQI  K+RDE RPR GV+R+REF+MKD YSF +  +  +++YN M+ +
Sbjct: 121 ETMLYKQFPLIVYQIHTKYRDEARPRSGVIRAREFIMKDGYSFHINQKSLQNTYNNMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           Y  IF+R+GL    ++AE G IGG LSHEF   ++ GE  + 
Sbjct: 181 YHTIFNRIGLNFCVVQAEPGKIGGALSHEFQAYSENGEDSIA 222



 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 95/174 (54%), Gaps = 4/174 (2%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYS--LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +N       IE+GHIF  G KY       +        +  ++MG YGIG  R++A +IE
Sbjct: 405 KNILSIHNCIEIGHIFQLGQKYLNLHTNYSQKNNEHKHNLSMEMGCYGIGITRIIAVIIE 464

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSK-VGCDVFWDDMGEQI 388
            ++D  GI+WPD +APFK+++I I  +  V  R+  EKIY +L   +G D+  DD  E  
Sbjct: 465 QNYDKNGILWPDVIAPFKLAIIPIDMYRSVNVRNIAEKIYTQLLSVIGIDILIDDRKEYP 524

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G+ FA  DL+G P  +I+  + +++ +VE K+R     E + LE +I Y   + 
Sbjct: 525 GTMFADIDLIGIPHILIISDRSLANQEVEYKYRKKNKIEKIKLEMLIRYLIEKI 578


>gi|256379843|ref|YP_003103503.1| prolyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
 gi|255924146|gb|ACU39657.1| prolyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
          Length = 581

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 98/239 (41%), Positives = 139/239 (58%), Gaps = 1/239 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G + + + G YSWLPLG + L N+  ++REE 
Sbjct: 4   RMSSLFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGGYSWLPLGLRVLRNIERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DAIGAQEIQFPALLPKEPYEATNRWTEYGPNIFRLKDRKGADYLLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFDLT EG   +Y +   +Y
Sbjct: 124 YSSYKDYPVALYQIQTKYRDEARPRAGILRGREFVMKDSYSFDLTDEGLAEAYQRHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           ++IF RLG+  + + A SG +GG  S EF+ +A  GE   F      D+    E     
Sbjct: 184 IKIFDRLGMDYVIVSATSGAMGGSASEEFLAVAPNGE-DTFVRSTESDYAANVEAVTTP 241



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/183 (38%), Positives = 103/183 (56%), Gaps = 4/183 (2%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T DV   +  D  P+ K   V+ARGIE+GHIF  G KY+   S    G DGK   + MG
Sbjct: 395 GTIDVAEVREGDPSPDGKGVLVAARGIEIGHIFQLGRKYADAFSLDALGPDGKPVRITMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VAA+ E SHD +G+IWP +VAP  + ++     D    +  EK+   LS  
Sbjct: 455 SYGIGVSRLVAAIAEQSHDDRGLIWPRNVAPADVHVVVAG-KDATLLEGGEKLAGELSSA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  DD     G +FA A+L+G P  ++VG + ++   VE+K R +G R ++ ++E +
Sbjct: 514 GLSVLLDDRKASPGVKFADAELVGVPTILVVG-RGLASGLVEVKDRRSGERVEVPVDEAV 572

Query: 436 NYA 438
            + 
Sbjct: 573 QHV 575


>gi|148242044|ref|YP_001227201.1| threonyl-tRNA synthetase [Synechococcus sp. RCC307]
 gi|147850354|emb|CAK27848.1| Threonyl-tRNA synthetase [Synechococcus sp. RCC307]
          Length = 609

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 132/437 (30%), Gaps = 40/437 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++   I +   RD       L L + +  +   G+  W P G +    +    RE   
Sbjct: 192 LSEHKRRIEEAKRRDHRRIGTDLDLFS-IEDEAGAGLVFWHPRGARMRLLIEDFWREAHF 250

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +   DLW  SG  D Y + M      +++     P +       + S +
Sbjct: 251 AGGYELLYTPHVADIDLWKTSGHLDFYRESMFGPMTVDEREYQLKPMNCPFHVLTYASTL 310

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP  + ++   +R E      G+MR R F   DA+ F L  + S     K+    
Sbjct: 311 RSYKELPIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCLPEQISDE-ILKILDLT 369

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I      ++  +   + P                           D            
Sbjct: 370 ETILSTFDFRNYEINLSTRPEKS-----------------IGDDAVWDLATKGLTEALQR 412

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D++    + S   ++      FG          
Sbjct: 413 KGWDYKIDEGGGAFYGPKIDL---KIEDAIGRMWQCSTIQLDFNLPERFG--------LE 461

Query: 302 FKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +  ADG      M    I     R    + E+                            
Sbjct: 462 YVAADGSRQRPIMIHRAIFGSLERFFGIMTENYAGDFPFWLAPEQIRLLPVT-------D 514

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E I + LS  G     D  GE++G      +    P+  ++G++      + ++
Sbjct: 515 EVMGYAETIQSELSAAGIRSRIDRSGERLGKLIRSGEQQKIPVLAVIGAQEAEQGTLSLR 574

Query: 420 HRLTGIREDMSLEEVIN 436
            R  G    +   +V+ 
Sbjct: 575 SRRQGDLGSVGRSQVLQ 591


>gi|326773248|ref|ZP_08232531.1| threonine--tRNA ligase [Actinomyces viscosus C505]
 gi|326636478|gb|EGE37381.1| threonine--tRNA ligase [Actinomyces viscosus C505]
          Length = 683

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/456 (14%), Positives = 138/456 (30%), Gaps = 45/456 (9%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L +   RD      +L L +    +   G+  + P G      +   + +    
Sbjct: 246 KAYQTRLAEAAKRDHRKLGAELDLYS-FPEEIGPGLVVFHPKGAMLRHQIEQYVVDRHLD 304

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHE 111
            G   +  P +    L+  SG    Y   M                 +  +       + 
Sbjct: 305 YGFDFVHTPEISKGGLFHTSGHLPYYADTMFPPMLADEERDAEGNITKAGQEYYLKAMNC 364

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +  
Sbjct: 365 PMHNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFTQDDSHTYCTPEQAG 424

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           +         +L I    GL    +   +    G    +FI            S      
Sbjct: 425 EE-IRAQIDFFLSILKAFGLTDFYLELSTRDEDGAKKDKFI-----------GSDADWTA 472

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +     D             A Y       + ++ D++    ++S    +       
Sbjct: 473 ATQALQDACDASGLEVVPDPGGAAFYGPKV---SVQVKDAIGRTWQMSTIQYDFNQP--- 526

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
                      +  ADG       + S  +G++     V+    +     +P  ++P ++
Sbjct: 527 -----ERFDLEYTAADGTHQRPIMIHSAKLGSVERFIGVLT---EHYAGAFPAWLSPVQV 578

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            LI +    +      + + A+L   G  V  D   ++ G +         P  +I G +
Sbjct: 579 RLIPVA---EAFDAYVDDVAAQLRAQGVRVEVDHSDDRFGKKIRNTSKDKIPFTLIAGGE 635

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
                 V  + R       + ++E + +        
Sbjct: 636 DAEAGAVSFRFRDGQQTNGVPVKEAVAHIVSVIDAR 671


>gi|260662303|ref|ZP_05863199.1| prolyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
 gi|260553686|gb|EEX26578.1| prolyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
          Length = 573

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 102/250 (40%), Positives = 147/250 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P  +E P DAE+ SHK+M+R G I+Q S G++++LPL  + +  +  IIREE
Sbjct: 1   MKQSQMLIPTQKEAPADAEVLSHKMMVRAGYIYQVSAGVWAYLPLAYRVIRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E+ +P L  ADLW ESGRYD+YG  + +L DR ++  I GPTHEE +T I R 
Sbjct: 61  MDKAGAVEILLPGLLPADLWKESGRYDAYGDNLFKLKDRRERDFILGPTHEETVTSILRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q K+RDE RPR+G++R +EF M D YSF     G   +Y+    +
Sbjct: 121 AIHSYKKLPLVVYQLQDKYRDEDRPRYGILRGKEFEMLDGYSFSADQAGLDQAYDLQAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    + A+SG +GG  S EF   A  GE  +  +       +    T F 
Sbjct: 181 YRNIFDRIGLDYKVILADSGTMGGKNSQEFSAPAAIGEDVIAYTDGDYAANLEKATTKFT 240

Query: 241 DIISLNSIVE 250
               +    E
Sbjct: 241 PTKQIGEEAE 250



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/184 (36%), Positives = 99/184 (53%), Gaps = 2/184 (1%)

Query: 261 DVHNEKLFDSLPEN-KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           D    +  ++ P+        GIE+GHIF  GT YS    AT    +G+D  + MG YGI
Sbjct: 387 DFRTVQEGETAPDGLPIKFTNGIEIGHIFKLGTHYSEVFGATVLDQNGRDVPMIMGCYGI 446

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R+++A+ E + D  G++WP +VAPF I +I + A  +      E+I A L + G +V
Sbjct: 447 GVSRLLSAISEQNADENGLVWPQAVAPFDIHVIPVNAKKEDQMAMAEEITANLEEAGYEV 506

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E+ G +FA ADL+G P++V VG K   +  VEIK R TG   ++  EE+    +
Sbjct: 507 LVDDRKERAGVKFADADLIGVPIRVTVGKK-AGEGIVEIKIRKTGETLEVHKEELATNIA 565

Query: 440 HRFS 443
               
Sbjct: 566 ILLK 569


>gi|300858703|ref|YP_003783686.1| prolyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686157|gb|ADK29079.1| Prolyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
          Length = 585

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 105/282 (37%), Positives = 153/282 (54%), Gaps = 5/282 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R   I + + G+Y+WLPLG + L  +  I+REE 
Sbjct: 4   RLSALFLRTLREDPADAEVPSHKLLVRARYIRRAAPGVYTWLPLGLRTLKKIENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DGIGAQELLFPALLPREPYQATNRWTEYGDSLFRLKDRKGADYLLGPTHEEMFAGAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T +G + SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDDGLESSYQRHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RI  RLG++     A SG +GG  S EF+ +++ GE   F      ++    E      
Sbjct: 184 QRILDRLGVEYAICSATSGAMGGSASEEFLAISENGE-DTFVRATQGNYAANVEAVVTQ- 241

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
              +   +E    P A   D  N +  DSL    + +   IE
Sbjct: 242 -PGVERSIEGL--PEAKEYDTPNSETIDSLVAWAQNAGITIE 280



 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 6/184 (3%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +    +  D  PE +     ARGIEVGHIF  G KY+          +GK     MGSY
Sbjct: 401 IEAAEVREGDPAPEGQGTLTLARGIEVGHIFQLGRKYTEAFDVQILDENGKRAIPTMGSY 460

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R++A + E  HD KG+ WP  VAPF + ++     D    +A + + + L   G 
Sbjct: 461 GIGVSRLMAVLAEQRHDEKGLNWPIEVAPFAVHVVVAN-KDTAAIEAGDALVSELDAAGV 519

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +V +DD      G +F  A+LLG P  V++G +   + KVE++ R      ++   E   
Sbjct: 520 EVLFDDRPKVSPGVKFKDAELLGMPYVVVLG-RSFKEGKVELRVRGE-EAVEIPAAEAAA 577

Query: 437 YASH 440
               
Sbjct: 578 RIID 581


>gi|254413846|ref|ZP_05027615.1| prolyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196179443|gb|EDX74438.1| prolyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 596

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 120/270 (44%), Positives = 160/270 (59%), Gaps = 5/270 (1%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
             L  L+E+P +AEI SHKL++R G I +   GIY++LPL  + L  V+ I+REE N TG
Sbjct: 1   MLLVTLREDPAEAEIPSHKLLVRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREEMNATG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           A E  +P LQ +DLW ESGR+D+Y K    M  L+DR ++ +  GPTHEEV+T I R  I
Sbjct: 61  AQECLLPQLQPSDLWRESGRWDTYTKAEGIMFALSDRQNRELGLGPTHEEVITTIAREMI 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF +  +  K +Y  M  +Y 
Sbjct: 121 RSYRQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHVNEDSLKKTYQDMDQAYR 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP--IPSENTDFD 240
            +  R GL    + A+SG IGG  S EF+VLAD GE ++  ++D         + +   D
Sbjct: 181 NMISRCGLAFRAVEADSGAIGGSGSQEFMVLADIGEDEILYTEDGNYSANVEKASSLPAD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              S     E+   P   T D   + L  S
Sbjct: 241 PQPSPFETYEKRETPNTPTIDSLCKFLNCS 270



 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 94/172 (54%), Gaps = 1/172 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     SARGIE GHIF  GTKYS  M AT+    G+++ + MG YG+G  R+  A +E 
Sbjct: 422 PSQILHSARGIEAGHIFQLGTKYSKAMGATYTNEAGEENPLYMGCYGVGVSRLAQAAVEQ 481

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D  GIIW  ++AP+   +      D    +A E +Y +L + G +   DD  E+ G +
Sbjct: 482 SYDKDGIIWAPAIAPYHAIITVPNISDTKQMEAAETLYQQLWQAGVETLLDDRNERAGVK 541

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F  ADL+G P +++ G + +   KVE+  R T   +++ L++V++       
Sbjct: 542 FKDADLIGIPYRIVTG-RSLKQGKVEVAVRATHQSQELPLDQVVSTLKQWLD 592


>gi|194861340|ref|XP_001969762.1| GG23767 [Drosophila erecta]
 gi|190661629|gb|EDV58821.1| GG23767 [Drosophila erecta]
          Length = 746

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/432 (16%), Positives = 146/432 (33%), Gaps = 40/432 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   I+ E  + G  E+ 
Sbjct: 341 EEAAKRDHRKIGREQELF--FFHELSPGSCFFQPRGAHIYNTLMGFIKSEYRKRGFQEVI 398

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW+ SG +  Y + M       +      P +      IF +  +S+R LP 
Sbjct: 399 SPNIYNAKLWMTSGHWQHYAENMFSFEAEKET-FALKPMNCPGHCLIFDNRNRSWRELPL 457

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +               ++   G
Sbjct: 458 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAPEQIKSEM-KGCLEFLKYVYTIFG 516

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P       E    A+                  +     ++        
Sbjct: 517 FSFQLV-LSTRPDNYLGELEQWNDAEK-----------------ALAESLNEFGMPWKEN 558

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    +++L   A       K 
Sbjct: 559 PGDGAFYGPKIDI---TIMDALKRAHQCATIQLD----FQLPIRFNLSYIA---DDGEKK 608

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +     WP  ++P ++ ++ +           + + 
Sbjct: 609 RPVIIHRAILGSVERMIAILT---ENFAGKWPFWLSPRQVMVVPVGP---AYDQYAQSVR 662

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R   +  +
Sbjct: 663 DQLHDAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGE 722

Query: 429 MSLEEVINYASH 440
           +S+ E+I     
Sbjct: 723 VSVAELITKLQK 734


>gi|283955362|ref|ZP_06372861.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
 gi|283793122|gb|EFC31892.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
          Length = 602

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 150/444 (33%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L T    +   G+  WL  G +    +  ++ +   
Sbjct: 194 LKEYLTIIEEAKKRDHRKLGAELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHR 252

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S++
Sbjct: 253 LRGYEPVRGPELLKADAWKISGHYANYKENM-YFTQIDEQEYGIKPMNCVGHIKIYQSNV 311

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++    
Sbjct: 312 RSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFV 370

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +                               T   +     +  +    +     D+
Sbjct: 371 DNLMKLFDFSYEMEI------------------STKPEKAIGDDEIWEVATKALKEALDE 412

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D+L    +     ++    F    ++       
Sbjct: 413 QGLKYGIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPNRF----KLE 461

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  ++ +      +    +G+      ++            +       + I I    + 
Sbjct: 462 YTDSNNEKKQPVMLHRAILGSFERFIGILTEHC------AGEFPFFIAPTAIGIVPIGEA 515

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I   L K   D    +  E +  +  +A+    P+ +++G   V+   V ++ 
Sbjct: 516 HIAYAKEIQKELLKFNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALRD 575

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    ++++SL+E I     + S 
Sbjct: 576 RRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|270290317|ref|ZP_06196542.1| prolyl-tRNA synthetase [Pediococcus acidilactici 7_4]
 gi|270281098|gb|EFA26931.1| prolyl-tRNA synthetase [Pediococcus acidilactici 7_4]
          Length = 571

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 107/279 (38%), Positives = 160/279 (57%), Gaps = 3/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P ++E P DAE+ SHK+MLR G I Q S G+Y++LP+  K ++ +  IIREE
Sbjct: 1   MKQSKILIPTVKEVPNDAEVLSHKMMLRAGYIRQISAGMYAYLPMAYKVMEKIKRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+EM  P +  A+LW +SGRY++YG+E+ +  +R+D+  I GPTHEE MT + R 
Sbjct: 61  MTAIDAVEMLTPAVLPAELWKKSGRYETYGQELYKFKNRHDRDFILGPTHEETMTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ+K+RDE RPR+G++R REFLM DAYSF    E    S+     +
Sbjct: 121 EVKSYKKLPLTLYQIQMKYRDEDRPRYGLLRGREFLMSDAYSFHADEETLDESFRAFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--D 238
           Y  IF R GLK   +  ++G +GG  S EF  +A  GE  +  S+   D+    E     
Sbjct: 181 YQNIFDRCGLKYREIVGDAGAMGGHDSKEFSAIASIGEDTIAYSE-ESDYAANLEMASSV 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           ++D+    +  E           +        + + + +
Sbjct: 240 YEDLQMHENPAEIEKVATGDAHSIDEVAKELGVDDGRLI 278



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 66/172 (38%), Positives = 96/172 (55%), Gaps = 1/172 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            + K    +GIE+GHIF  GTKYS  + AT    +G+   V MG YGIG  R+++AV E 
Sbjct: 398 GKGKLKFTKGIEIGHIFKIGTKYSKALDATVLDQNGRAIPVIMGCYGIGVSRLLSAVSEQ 457

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++WP ++APF + +I + A +       ++I   L   G DV  DD  E+ G +
Sbjct: 458 LADENGLVWPKNIAPFDVHVIPVNAKNDEQMQVADQINTELVAAGYDVLIDDRKERAGVK 517

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           FA +DL+G PL+V VG K  S+  VE+K R TG   ++ L E+ N      +
Sbjct: 518 FADSDLIGIPLRVTVGKK-ASEGIVEVKLRQTGETVEVKLAELKNTVEILLN 568


>gi|148543925|ref|YP_001271295.1| prolyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|184153321|ref|YP_001841662.1| prolyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227364834|ref|ZP_03848881.1| prolyl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|325682540|ref|ZP_08162057.1| proline--tRNA ligase [Lactobacillus reuteri MM4-1A]
 gi|166980132|sp|A5VJD4|SYP_LACRD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701303|sp|B2G6V0|SYP_LACRJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148530959|gb|ABQ82958.1| prolyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|183224665|dbj|BAG25182.1| prolyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227070097|gb|EEI08473.1| prolyl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|324978379|gb|EGC15329.1| proline--tRNA ligase [Lactobacillus reuteri MM4-1A]
          Length = 577

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 109/250 (43%), Positives = 150/250 (60%), Gaps = 2/250 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +E P DAE  SHK+M+R G I+Q S G++S+LPL  + +  V  IIR+E
Sbjct: 1   MKQSKVLIPTKKEAPSDAEALSHKMMIRAGYIYQVSAGVWSYLPLAYRVIRKVENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM +P L  ADLW ESGRY+SYG  + +L DR D+  I GPTHEE  T++ R 
Sbjct: 61  MDKAGAVEMLMPGLLPADLWKESGRYESYGDNLFKLKDRRDRDFILGPTHEETFTEVLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE RPR+G++R +EF M D YSF    EG   +YN    +
Sbjct: 121 SIKSYKKLPLVVYQLQDKFRDEDRPRYGILRGKEFEMLDGYSFSADQEGLDEAYNNQAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    + A+SG +GG  S EF   A+ GE  +  +    D+    E  +  
Sbjct: 181 YRNIFDRIGLNYKVILADSGTMGGKNSQEFSAPAEVGEDIIAYTDG--DYAANIEKAESK 238

Query: 241 DIISLNSIVE 250
                 + V 
Sbjct: 239 FTGVQQTAVP 248



 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 106/190 (55%), Gaps = 5/190 (2%)

Query: 261 DVHNEKLFDSLPEN-KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           D  N K  +  P+        GIE+GHIF  GT YS  + A    ++G+   V MGSYGI
Sbjct: 387 DFRNVKEGEIAPDGQPLKFTPGIEIGHIFKLGTHYSSKLGAQVLDSNGRLTDVIMGSYGI 446

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R+++AV E + D  G++WPDS+APF + +I + A  +      +KI  +L++ G +V
Sbjct: 447 GVTRLLSAVAEQNADENGLVWPDSIAPFDVHVIPVNAKKEDQMAMADKIDQQLTEAGYEV 506

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY-- 437
             DD  E+ G +FA +DL+G P++V VG K   D  VEIK R TG   ++  EE++N   
Sbjct: 507 LVDDRKERAGVKFADSDLIGIPIRVTVGKK-AQDGIVEIKIRKTGETVEVKQEELVNTVG 565

Query: 438 -ASHRFSNNR 446
               + +  +
Sbjct: 566 ILLKQLNEEK 575


>gi|296536619|ref|ZP_06898695.1| threonine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
 gi|296263053|gb|EFH09602.1| threonine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
          Length = 660

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 136/443 (30%), Gaps = 46/443 (10%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      ++ L    + + + G   W P G +    +   +R  Q   G
Sbjct: 232 YLHQLEEAERRDHRKIGKEMGLF--HLQEEAVGSIFWHPKGWRLYTTLQDYMRRRQEAGG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSH 121
             E+  P L    LW  SG +D Y + M      ++      +   P +      IF   
Sbjct: 290 YQEVRTPQLVDRKLWEASGHWDKYRENMFIATVDDESEKDRVLALKPMNCPCHVQIFNHG 349

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP    +     R E      G+MR R F+  DA+ F    + +  +       
Sbjct: 350 LRSYRELPLRMAEFGACHRYEPSGALHGIMRVRSFVQDDAHIFCAEDQIAAETVEF-VAL 408

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++  LG     ++    P     S E                   D    +      
Sbjct: 409 LSAVYRDLGFTDFRVKFSDRPEKRAGSDE-----------------TWDRSEGALKEACR 451

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  +     A Y    +     L D++  + +     ++    F    +    + A
Sbjct: 452 IAGVEYELNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVD----FVLPER----LDA 500

Query: 301 TFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            + G DG  H   M    I     R +  +IE       +            +       
Sbjct: 501 EYVGEDGNRHRPVMLHRAILGSFERFLGILIEEHAGRFPLWLAPVQVAVATIVDEAAPFA 560

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +    A  K        G  V  D   E+I  +         P+  ++G +     KV +
Sbjct: 561 REAAAAFRK-------AGLSVELDLRNEKINRKVVDHIEQRVPVLAVIGRREAEQGKVVL 613

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +      + +MSL E +   +  
Sbjct: 614 RRLPGREQVEMSLAEAVATLAAE 636


>gi|163781697|ref|ZP_02176697.1| prolyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882917|gb|EDP76421.1| prolyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 570

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 112/239 (46%), Positives = 154/239 (64%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFL  L+E+P +AE  SH+L+L+ G I Q S GIY  LP G + +  + +I+R+E
Sbjct: 1   MRWSRYFLYTLKEDPAEAEAPSHRLLLKAGFIKQVSAGIYEILPAGWRVIRKIESIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L  A+LW E+GR+D+YG E+ RL DR+ +    GPTHEE +TD+ R 
Sbjct: 61  MDRSGAQELLLTVLNPAELWKETGRWDTYGNELFRLKDRSGREYCLGPTHEEEITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP T YQIQ+KFRDE RPRFG++R REF+MKDAYSFD     +  SY  M  +
Sbjct: 121 VVHSYRQLPVTLYQIQVKFRDEKRPRFGLIRGREFIMKDAYSFDADEFSATMSYENMKFA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y R+F +L L+ I  +A +G IGG  SHEFI   D GE +V   +    +   +E    
Sbjct: 181 YDRVFKKLRLEVIMAQASTGQIGGKQSHEFIAFTDYGEAKVGYCESC-GYAANAEIIPL 238



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/193 (38%), Positives = 111/193 (57%), Gaps = 3/193 (1%)

Query: 256 YAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           Y    DV      D  P+        RG+E+GHIF  GT+YS PM A F   +G +  + 
Sbjct: 378 YGEFVDVAEVVEGDPCPQCGSPLKVKRGLELGHIFLLGTRYSEPMKAYFTDPEGNEKPII 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R+++A++E  HD KGI WP  VAPF++ +I +   D    +  EK+Y    
Sbjct: 438 MGCYGIGISRIMSAIVEQYHDDKGIKWPTPVAPFELEIICLNMSDSQMTEVAEKLYLEAE 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V +DD  E  G +FA ADL+GFP +++VG K V + KVE++ R TG + D+ +EE
Sbjct: 498 EKGIEVIYDDREESAGFKFADADLVGFPYRIVVGRK-VKEGKVELQKRATGEKLDVPVEE 556

Query: 434 VINYASHRFSNNR 446
           VI+      + ++
Sbjct: 557 VIDRVKEMIAEDK 569


>gi|304384864|ref|ZP_07367210.1| proline--tRNA ligase [Pediococcus acidilactici DSM 20284]
 gi|304329058|gb|EFL96278.1| proline--tRNA ligase [Pediococcus acidilactici DSM 20284]
          Length = 571

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 107/279 (38%), Positives = 160/279 (57%), Gaps = 3/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P ++E P DAE+ SHK+MLR G I Q S G+Y++LP+  K ++ +  IIREE
Sbjct: 1   MKQSKILIPTVKEVPNDAEVLSHKMMLRAGYIRQISAGMYAYLPMAYKVMEKIKRIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+EM  P +  A+LW +SGRY++YG+E+ +  +R+D+  I GPTHEE MT + R 
Sbjct: 61  MTAIDAVEMLTPAVLPAELWKKSGRYETYGQELYKFKNRHDRDFILGPTHEETMTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ+K+RDE RPR+G++R REFLM DAYSF    E    S+     +
Sbjct: 121 EVKSYKKLPLTLYQIQMKYRDEDRPRYGLLRGREFLMSDAYSFHADEETLDESFRAFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--D 238
           Y  IF R GLK   +  ++G +GG  S EF  +A  GE  +  S+   D+    E     
Sbjct: 181 YQNIFDRCGLKYREIVGDAGAMGGHDSKEFSAIASIGEDTIAYSE-ESDYAANLEMASSV 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           ++D+    +  E           +        + + + +
Sbjct: 240 YEDLQMHENPAEIEKVATGDAHSIDEVAKELGVDDGRLI 278



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 117/251 (46%), Gaps = 19/251 (7%)

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              R E   I  D   E +V +  G  +       ++      + + D    + ++ E  
Sbjct: 337 FDKRPEDIQIVADKYVEQMVNSVIGANEDGYHYTNVNV---GRDFNVDQFADIRTVKEGE 393

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            AP                 + K    +GIE+GHIF  GTKYS  + AT    +G+   V
Sbjct: 394 LAPDG---------------KGKLKFTKGIEIGHIFKIGTKYSKALDATVLDQNGRAIPV 438

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R+++AV E   D  G++WP ++APF + +I + A +       ++I   L
Sbjct: 439 IMGCYGIGVSRLLSAVSEQLADENGLVWPKNIAPFDVHVIPVNAKNDEQMQVADQINTEL 498

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G DV  DD  E+ G +FA +DL+G PL+V VG K  S+  VE+K R TG   ++ L 
Sbjct: 499 VAAGYDVLIDDRKERAGVKFADSDLIGIPLRVTVGKK-ASEGIVEVKLRQTGETVEVKLA 557

Query: 433 EVINYASHRFS 443
           E+ N      +
Sbjct: 558 ELKNTVEILLN 568


>gi|260434317|ref|ZP_05788287.1| threonyl-tRNA synthetase [Synechococcus sp. WH 8109]
 gi|260412191|gb|EEX05487.1| threonyl-tRNA synthetase [Synechococcus sp. WH 8109]
          Length = 611

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 69/426 (16%), Positives = 135/426 (31%), Gaps = 36/426 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD       L L + +  +   G+  W P G +    +    R+     G   + 
Sbjct: 203 EEALRRDHRRIGKDLDLFS-IEDEAGAGLVFWHPRGARMRLLIEEFWRQAHFEGGYELLY 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW  SG  D Y + M    + +++     P +       + S ++SYR LP 
Sbjct: 262 TPHVADISLWKTSGHLDFYAESMFGPMEVDEREYQLKPMNCPFHVLTYASKLRSYRELPI 321

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + ++   +R E      G+MR R F   DA+ F L  + S     K+     RI     
Sbjct: 322 RWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCLPEQISDE-ILKILDLTERILSSFD 380

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P                           D          D       I 
Sbjct: 381 FSNYEINLSTRPEKS-----------------IGDDTVWDLATKGLIEALDRKGWAYKID 423

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E   A Y    D+   K+ D++    + S   ++    F    ++ L   A       + 
Sbjct: 424 EGGGAFYGPKIDL---KIEDAIGRMWQCSTIQLD----FNLPERFDLDYVAA--DGSKQR 474

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             +   +      R    + E+                              +   E++ 
Sbjct: 475 PIMIHRAIFGSLERFFGIMTENYAGDYPFWLAPEQVRLLPVT-------DEVQPYAEQVL 527

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L+K G     D  G+++G      + +  P+  ++G+K    + V ++ R  G     
Sbjct: 528 DQLTKAGVRATIDRSGDRLGKLIRTGEQIKIPVLAVIGAKEAEQNAVSLRSRRDGDLGVT 587

Query: 430 SLEEVI 435
           ++ +++
Sbjct: 588 AVADLL 593


>gi|260903858|ref|ZP_05912180.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Brevibacterium
           linens BL2]
          Length = 668

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 72/451 (15%), Positives = 139/451 (30%), Gaps = 44/451 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +   +R      G   +  
Sbjct: 248 EAERRDHRKLGAELDLFS-FPEELGSGLPVFHPKGGVIKREMEDYVRARHIEEGFEYVGT 306

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDIFR 119
           P +    L+  SG    YG+ M                 +          +  +   IFR
Sbjct: 307 PHISKEALYYTSGHLPYYGENMFPPISVDEVRDESGEIVKEGTPYRLKAMNCPMHNLIFR 366

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP   ++    +RDE      G+ R R     D++S+    + +K     + 
Sbjct: 367 SRGRSYRELPLRLFEFGTVYRDEASGVVHGLTRVRALTQDDSHSYVAQEDAAKE-IRHLL 425

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    GL    +   +    G    +FI   +                       
Sbjct: 426 EFVLSLLRDFGLNDFYLELSTRDEDGKKKDKFIGSDEQ-----------WAEATQVLEEV 474

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             +            A Y       + +  D++    ++S   ++      FG       
Sbjct: 475 ASETGLELVPDPGGAAFYGPKV---SVQARDAIGRTWQMSTVQLDFNQPERFG------- 524

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              ++ ADG       + S   G++     V+    +     +P  +AP +++ I +   
Sbjct: 525 -LEYQAADGTRKQPVMIHSAKFGSIERFMGVLI---EHYAGAFPVWLAPVQVTCIPVA-- 578

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D   ++ A+L   G  V  DD  ++   +   A     P  +I G      + V 
Sbjct: 579 -EEFNDYLAEVAAQLKAAGVRVEIDDSDDRFPKKIRNASKSKVPFVLIAGGDDRDANAVS 637

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            + R       +S+ E ++           V
Sbjct: 638 FRFRDGEQDNGVSVAEAVSRIVESIETKAQV 668


>gi|319948036|ref|ZP_08022210.1| prolyl-tRNA synthetase [Dietzia cinnamea P4]
 gi|319438275|gb|EFV93221.1| prolyl-tRNA synthetase [Dietzia cinnamea P4]
          Length = 581

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 126/438 (28%), Positives = 183/438 (41%), Gaps = 49/438 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ SHKL++R G I + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RLSHLFLRTLRDDPSDAEVLSHKLLVRAGYIRRVAPGVYSWLPLGLRTLRRVEQVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+S+P L   + +  +GR+  YG  + RL DR    M+ GPTHEE+ T   +  
Sbjct: 64  DAFGAQEISLPALLPREPYETTGRWTEYGPALFRLKDRKGNDMMLGPTHEELFTLTVQGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY     +Y
Sbjct: 124 YSSYKDLPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDVDDAGLGRSYRAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLG++ +   A SG +GG  S EF+ ++  GE   F       +    E      
Sbjct: 184 QRIFDRLGIEYVICAATSGAMGGSASEEFLAVSAAGE-DTFVRSTDGAYAANVEAVVTPA 242

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                        P A   D  +    DSL      +  G E+G            +   
Sbjct: 243 ----PPARPLEGLPEATVHDTPDTPTIDSLVAWANSAGLGREIGAADTL-----KNVMLK 293

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            +    +   + +G  G               D +  +     A     +  ++  D   
Sbjct: 294 VRRPGEEWELLAVGLPG---------------DREVDMKRVEAALEPAEVAILEEADFAA 338

Query: 362 RDACEKIY---ARLSKVGCDVFWDDM-----------GEQIGSQFAVADLLGFPLQVIVG 407
                K Y     L         D              E  G              ++ G
Sbjct: 339 NPFLVKGYIGPRALRDNEVRYLVDPRVVEGTAWITGADE-PGRHVVD---------LVCG 388

Query: 408 SKFVSDSKVEIKHRLTGI 425
             F  D  +E+     G 
Sbjct: 389 RDFTPDGTIEVAEVREGD 406



 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 4/187 (2%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +V   +  D  P+       ARGIE+GHIF  G KY+        G +GK   V MG
Sbjct: 395 GTIEVAEVREGDPAPDGHGTLTLARGIEIGHIFQLGRKYTDAFGFDVLGENGKPARVTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA + E   D KG++WP   AP  +  + I   DQ   D    +     + 
Sbjct: 455 SYGIGVSRLVAVLAEQFADDKGLVWPAEAAPADVH-VVIANKDQAAIDGAATLVEAFDRA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +V +DD     G +F  A+L+G P  V+VG +  S+  VE++HR TG    ++++   
Sbjct: 514 RLEVLFDDRKASPGVKFKDAELIGVPWVVVVG-RGWSEGTVELRHRATGDVTQVAVDGAA 572

Query: 436 NYASHRF 442
                  
Sbjct: 573 EEIIRLI 579


>gi|56708459|ref|YP_170355.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670930|ref|YP_667487.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457616|ref|ZP_03666089.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254371083|ref|ZP_04987085.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875304|ref|ZP_05248014.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|81820763|sp|Q5NF37|SYP_FRATT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123359400|sp|Q14GJ0|SYP_FRAT1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|56604951|emb|CAG46045.1| Prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321263|emb|CAL09428.1| Prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151569323|gb|EDN34977.1| hypothetical protein FTBG_00840 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841303|gb|EET19739.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159660|gb|ADA79051.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 565

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 113/333 (33%), Positives = 188/333 (56%), Gaps = 6/333 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E     
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDYAANIELATYA 239

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
            +D    ++  + +E+   P   T +   +++   + +  +        G+ F    +  
Sbjct: 240 KSDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIKDAGGNFFALVIRGD 299

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             ++ T      +       +       +  A 
Sbjct: 300 HELNETKINKLDQIIAPYTLATKEEIFSIFNAN 332



 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/183 (37%), Positives = 103/183 (56%), Gaps = 3/183 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVG 376
           G G  RV+AA IE SHD  GIIWP+S+AP++++++ I        ++  +K+Y  L   G
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKIKEVADKLYQDLLGDG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I 
Sbjct: 503 IDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITIAELIK 562

Query: 437 YAS 439
              
Sbjct: 563 ILK 565


>gi|331698443|ref|YP_004334682.1| Prolyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
 gi|326953132|gb|AEA26829.1| Prolyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
          Length = 577

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 99/238 (41%), Positives = 140/238 (58%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DAE+ SHKL++R G + + + G+YSWLPLG + L  +  I+REE +
Sbjct: 1   MSSLFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGVYSWLPLGLRVLRRIEEIVREEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   D +  + R+  YG  + RL DR     + GPTHEE+ T   +   
Sbjct: 61  AIGAQEIQFPALLPRDPYESTNRWTEYGPNLFRLKDRKGNDYLLGPTHEELFTLAVKGEY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFDL+ EG   SY     +Y+
Sbjct: 121 SSYKDYPVILYQIQNKYRDEERPRAGILRGREFLMKDSYSFDLSDEGLSESYALHRKAYV 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           ++F RL L+ + + A SG +GG  S EF+  A+TGE     S+      + +  T   
Sbjct: 181 KVFDRLSLRYVIVSATSGAMGGSASEEFLAEAETGEDTYVRSESGYAANVEAVVTPAP 238



 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 65/183 (35%), Positives = 101/183 (55%), Gaps = 4/183 (2%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+ +    SARGIE+GHIF  G KY+        G D K   + MG
Sbjct: 391 GTIEAAEVRDGDPSPDGRGTLESARGIEIGHIFQLGRKYTNAFGLDALGPDSKPVRITMG 450

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA + E SHD  G++WP +V+P+ + ++     ++      EK+ A L   
Sbjct: 451 SYGIGVSRLVAVIAEQSHDESGLVWPRAVSPYDVHVVVAG-KNEEITAGGEKLAAELEAA 509

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  DD     G +FA A+L+G P  V+VG + ++D K+E+K R +G RE+++L+  +
Sbjct: 510 GLSVLLDDRKASPGVKFADAELVGVPTIVVVG-RGLADGKIEVKDRRSGEREEIALDGAV 568

Query: 436 NYA 438
            + 
Sbjct: 569 AHL 571


>gi|208779640|ref|ZP_03246985.1| prolyl-tRNA synthetase [Francisella novicida FTG]
 gi|208744601|gb|EDZ90900.1| prolyl-tRNA synthetase [Francisella novicida FTG]
          Length = 565

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 113/333 (33%), Positives = 187/333 (56%), Gaps = 6/333 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLNDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E     
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDYAANIELATYA 239

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             D    ++  + +E+   P   T +   +++   + +  +        G+ F    +  
Sbjct: 240 KPDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIKDAEGNFFALVIRGD 299

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             ++ T      +       +       +  A 
Sbjct: 300 HELNETKINKLEQIVAPYTLATKEEIFSIFNAN 332



 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 69/183 (37%), Positives = 104/183 (56%), Gaps = 3/183 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVG 376
           G G  RV+AA IE SHD  GIIWP+S+AP++++++ I        ++  +K+Y  L   G
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKVKEVADKLYQDLLGDG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I 
Sbjct: 503 IDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQELIEYKNRKTQEKQEITIAELIK 562

Query: 437 YAS 439
             +
Sbjct: 563 ILT 565


>gi|78184510|ref|YP_376945.1| threonyl-tRNA synthetase [Synechococcus sp. CC9902]
 gi|123757112|sp|Q3AYC6|SYT_SYNS9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78168804|gb|ABB25901.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Synechococcus
           sp. CC9902]
          Length = 611

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/439 (16%), Positives = 143/439 (32%), Gaps = 36/439 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD       L L + +  +   G+  W P G +    +    R+     G   +  
Sbjct: 204 EALRRDHRRLGKDLELFS-IEDEAGAGLVFWHPRGARMRLLIEDFWRQAHFEGGYELLYT 262

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +    LW  SG  D Y + M      +++     P +       + S ++SYR LP  
Sbjct: 263 PHVADISLWKTSGHLDFYAESMFGPMQVDEREYQLKPMNCPFHVLTYASKLRSYRELPIR 322

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           + ++   +R E      G+MR R F   DA+ F L  + S     ++     RI      
Sbjct: 323 WAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCLPDQISDE-ILRILDLTERILSTFDF 381

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +   + P                      S+   +          +       I E
Sbjct: 382 NHYEINLSTRPEKS-----------------IGSEAVWELATKGLTEALERKGWNFKIDE 424

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+   K+ D++    + S   ++      FG  Y             K  
Sbjct: 425 GGGAFYGPKIDL---KIEDAIGRMWQCSTIQLDFNLPERFGLDY-------VAADGSKQQ 474

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + +     G++     ++  ++ G    W        + +          +   E++  
Sbjct: 475 PIMIHRAIFGSLERFFGIMTENYAGDFPFWLAPEQIRLLPVT------DDVQPYAEQVLN 528

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G     D  G+++G      + +  P+  ++G+K    + + ++ R  G     S
Sbjct: 529 QLKTAGIRATIDQSGDRLGKIIRTGEQMKIPVLAVIGAKEAEQNAISLRSRRDGDLGVTS 588

Query: 431 LEEVINYASHRFSNNRPVL 449
           ++ ++  A    +  +P L
Sbjct: 589 VDALLKAAQRANAERQPGL 607


>gi|257068210|ref|YP_003154465.1| prolyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
 gi|256559028|gb|ACU84875.1| prolyl-tRNA synthetase, family II [Brachybacterium faecium DSM
           4810]
          Length = 594

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 103/239 (43%), Positives = 142/239 (59%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASHKL++R G I + + G+Y+WLPLG K L  V  I+REEQ
Sbjct: 3   RLSSSFIRTLREDPADAEVASHKLLVRAGYIRRSAAGVYTWLPLGLKVLRKVEQIVREEQ 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+    LQ  + +  +GR++ YG  + RL DR     +  PTHEE+ T   +  
Sbjct: 63  DAIGGQEVLFSALQPREPYEATGRWEDYGPNLFRLQDRKQDDYLLAPTHEEMFTLTVKDL 122

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R+REFLMKDAYSFD+  EG   SY K  ++Y
Sbjct: 123 FSSYKDLPTMLYQIQAKYRDEARPRAGLLRTREFLMKDAYSFDVDDEGLDASYEKQRLAY 182

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            R F RLGL ++  RA++G +GG  S EF+     GE     S       + +  T   
Sbjct: 183 QRTFERLGLPTVICRADAGAMGGSRSEEFLHPTPVGEDTFVVSDGGYAANVEAVTTPAP 241



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 91/189 (48%), Gaps = 5/189 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+        RG+E+GHIF  G  Y+  +       +GK   V MG
Sbjct: 406 GTIEAAEVRDGDPAPDGSGPMRLTRGMEMGHIFQLGRTYAEALGLKVLDENGKSVVVTMG 465

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R +AAV E  HD KG+ WP  +AP  + ++     D       E+I   L   
Sbjct: 466 SYGIGVTRAIAAVAELCHDEKGLCWPRQLAPADVHIVATG-KDPAIFAEAERIAGALEAR 524

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD      G +F  ++LLG P  V+VG + ++   VE++ R  G   ++S EEV
Sbjct: 525 GLEVLYDDRPKVSPGVKFKDSELLGVPTSVVVG-RGLATGVVEVRDRAGGEIREVSPEEV 583

Query: 435 INYASHRFS 443
           ++  +    
Sbjct: 584 VDAVTAEVR 592


>gi|331697398|ref|YP_004333637.1| threonyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
 gi|326952087|gb|AEA25784.1| threonyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
          Length = 682

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 66/433 (15%), Positives = 135/433 (31%), Gaps = 47/433 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    Q   G+  + P G      +    R    + G
Sbjct: 250 YLERVAEAERRDHRRLGAELDLFS-FPDQIGSGLAVFHPKGGIVRKELEDYSRRRHEQAG 308

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
              ++ P +    L+  SG  + Y + M                 +  +     P +  +
Sbjct: 309 YEFVNTPHITKGQLFRTSGHLEWYEEGMYPGMILDEERDADGNVRKPGQDYYLKPMNCPM 368

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF +  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +    
Sbjct: 369 HNLIFDARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTEEQMEGE 428

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    L +    GL    +   +                        S +  +   
Sbjct: 429 -IASLLQFVLELLRDYGLDDFYLELSTRNPEKS----------------IGSDEAWERAT 471

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                  ++            A YA      + +  D++    ++S   +++        
Sbjct: 472 NVLRKVAEETGLHLVDDPGGAAFYAPKI---SVQAKDAIGRTWQMSTIQVDL----MLPD 524

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           ++ L  +A+      +   V +     G++    AV+   + G    W   V    I + 
Sbjct: 525 RFDLEYTAS---DGSRKRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAPVQVVGIPVT 581

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                    R+  E++ A L + G  V  D   +++  +     L   P  ++VG++ V 
Sbjct: 582 ------DDQREYVEQVAATLRERGVRVEVDSGDDRMQKKIRTHTLQKVPFMLVVGARDVE 635

Query: 413 DSKVEIKHRLTGI 425
              V  + R    
Sbjct: 636 AGAVSFRFRDGTQ 648


>gi|108757584|ref|YP_630572.1| threonyl-tRNA synthetase [Myxococcus xanthus DK 1622]
 gi|108461464|gb|ABF86649.1| threonyl-tRNA synthetase [Myxococcus xanthus DK 1622]
          Length = 400

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 135/433 (31%), Gaps = 44/433 (10%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      +L L    + + + G+  W P G      +   +R+   R G  E+  P L +
Sbjct: 6   DHRALGQRLDLF--HLQEEAPGMVFWHPRGLVLYRLLEEHVRQRMRREGYQEVRTPQLYA 63

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             LW  SG +D++ + M  + D   + +   P       ++ +    SYR+LP    +  
Sbjct: 64  QPLWERSGHWDNFRENMFLVEDGA-RHLGVKPVSCPGHIELVQRMAPSYRDLPLRLGEFG 122

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           L  R E      G+ R R+F   D + F   P+           S    +   G   + +
Sbjct: 123 LVHRAEPGGALHGLFRLRQFTQDDGHIFCAEPQVVPEVVRFAR-SLKDFYAGFGFDDVQV 181

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                P       E                   D           +      +     A 
Sbjct: 182 AFSGRPASRAGRDE-----------------LWDKAESWLLLAAKEAGLQCHMQPGEGAF 224

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y    +     L D L    +     +++                 +  A G      M 
Sbjct: 225 YGPKLEF---VLKDRLGRAWQCGTIQLDLVLP--------ERFDLHYVDASGARVRPVM- 272

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
                  R +   +E            ++ P+      + A   +   D  E+  A+L +
Sbjct: 273 -----LHRALLGSLERFIGVMLEHHGGALPPWLAPQQVVVASVGEGAADYAERFAAKLQE 327

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            GC    D  GE +  +   A   G P  V+ G++ V+   V ++ R  G + D+  E+ 
Sbjct: 328 AGCRASVDRRGESLSRKVLDAHAAGVPWLVVAGAREVAAGNVRLRQRD-GAQRDVPWEDA 386

Query: 435 INYASHRFSNNRP 447
                   ++ RP
Sbjct: 387 AA---ELVASCRP 396


>gi|187931393|ref|YP_001891377.1| prolyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|226701291|sp|B2SFQ6|SYP_FRATM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|187712302|gb|ACD30599.1| prolyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 565

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 113/333 (33%), Positives = 187/333 (56%), Gaps = 6/333 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E     
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDYAANIELATYA 239

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             D    ++  + +E+   P   T +   +++   + +  +        G+ F    +  
Sbjct: 240 KPDLSKRVNSQNTIEKIHTPNIKTIEKLYKEMSFDIKKTIKTMVIKDAGGNFFALVIRGD 299

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             ++ T      +       +       +  A 
Sbjct: 300 HELNETKINKLDQIIAPYTLATKEEIFSIFNAN 332



 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/183 (38%), Positives = 103/183 (56%), Gaps = 3/183 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDCKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVG 376
           G G  RV+AA IE SHD  GIIWP+S+AP++++++ I        ++  +K+Y  L   G
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKVKEVADKLYQDLLGDG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD G + G  FA ADL+G+   V++G K +    +E K+R T  ++++++ E+I 
Sbjct: 503 IDVLLDDRGARPGVMFADADLIGYSHHVVIGDKLLEQGLIEYKNRKTQEKQEITIAELIK 562

Query: 437 YAS 439
              
Sbjct: 563 ILK 565


>gi|254374768|ref|ZP_04990249.1| hypothetical protein FTDG_00943 [Francisella novicida GA99-3548]
 gi|151572487|gb|EDN38141.1| hypothetical protein FTDG_00943 [Francisella novicida GA99-3548]
          Length = 565

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 113/333 (33%), Positives = 187/333 (56%), Gaps = 6/333 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E     
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDYAANIELATYA 239

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             D    ++  + +E+   P   T +   +++   + +  +        G+ F    +  
Sbjct: 240 KPDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIKDAEGNFFALVIRGD 299

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             ++ T      +       +       +  A 
Sbjct: 300 HELNETKINKLEQIVAPYTLATKEEIFSIFNAN 332



 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 69/183 (37%), Positives = 104/183 (56%), Gaps = 3/183 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVG 376
           G G  RV+AA IE SHD  GIIWP+S+AP++++++ I        ++  +K+Y  L   G
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKVKEVADKLYQDLLGDG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I 
Sbjct: 503 IDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITIAELIK 562

Query: 437 YAS 439
             +
Sbjct: 563 ILT 565


>gi|118497952|ref|YP_899002.1| prolyl-tRNA synthetase [Francisella tularensis subsp. novicida
           U112]
 gi|194323174|ref|ZP_03056958.1| prolyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE]
 gi|152112922|sp|A0Q7N3|SYP_FRATN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118423858|gb|ABK90248.1| prolyl-tRNA synthetase [Francisella novicida U112]
 gi|194322538|gb|EDX20018.1| prolyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE]
          Length = 565

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 113/333 (33%), Positives = 187/333 (56%), Gaps = 6/333 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E     
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDYAANIELATYA 239

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             D    ++  + +E+   P   T +   +++   + +  +        G+ F    +  
Sbjct: 240 KPDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIKDAEGNFFALVIRGD 299

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             ++ T      +       +       +  A 
Sbjct: 300 HELNETKINKLEQIVAPYTLATKEEIFSIFNAN 332



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/183 (37%), Positives = 104/183 (56%), Gaps = 3/183 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVG 376
           G G  RV+AA IE SHD  GIIWP+S+AP++++++ I        ++  +K+Y  L   G
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKVKEVADKLYQDLLGDG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I 
Sbjct: 503 IDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITITELIK 562

Query: 437 YAS 439
             +
Sbjct: 563 ILT 565


>gi|116333948|ref|YP_795475.1| prolyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
 gi|122269368|sp|Q03QS8|SYP_LACBA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116099295|gb|ABJ64444.1| Prolyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
          Length = 569

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 105/235 (44%), Positives = 145/235 (61%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DAE  SH++MLR G I Q + G+Y++LPL  + L N+  IIREE
Sbjct: 1   MKQSQLLIPTLKEVPNDAEALSHQMMLRAGYIRQVTAGMYAYLPLAFRVLTNIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P +  A LW ESGRY++YG  + +  +R+D   I  PTHEE  T + R 
Sbjct: 61  MEKINAVEMLMPAVLPASLWQESGRYETYGPNLFKFKNRHDSDFILAPTHEETFTMLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPR+G++R REF+MKDAYSF L+ E     YN+M  +
Sbjct: 121 AIKSYKRLPLVMYQIQPKYRDEDRPRYGLLRGREFIMKDAYSFSLSDEDLDRIYNQMEQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R+GL    +  + G +GG  S EF  +A  GE  +  S    D+    E
Sbjct: 181 YENIFDRIGLNYRAIVGDGGAMGGKDSKEFSAIAPVGEDTIVYSDS-SDYAANLE 234



 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 64/189 (33%), Positives = 102/189 (53%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A +D+   +  D  P+   V    +GIE+GHIF  GT+YS  + AT     G+   V MG
Sbjct: 380 AFADLREVQPGDLSPDGSGVLKFTKGIEIGHIFKLGTRYSDALGATVLDEGGRQKPVVMG 439

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+++A+ E   D KG++WP ++APF I L+ +            ++  +L+  
Sbjct: 440 SYGIGVSRLLSAIAEQQADDKGLVWPRNIAPFDIHLVPVNLKKDDQAQLTSELEEQLTAK 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  +  DD  E+ G +FA +DL+G P+++ +G K   +  VEIK R TG   ++  +EV 
Sbjct: 500 GYRILTDDRKERPGVKFADSDLMGIPVRITIGKK-AGEGIVEIKIRKTGETVEVIKDEVA 558

Query: 436 NYASHRFSN 444
           +     F +
Sbjct: 559 STVEILFKD 567


>gi|25028444|ref|NP_738498.1| prolyl-tRNA synthetase [Corynebacterium efficiens YS-314]
 gi|259507503|ref|ZP_05750403.1| proline--tRNA ligase [Corynebacterium efficiens YS-314]
 gi|81846817|sp|Q8FP97|SYP_COREF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|23493729|dbj|BAC18698.1| putative prolyl-tRNA synthetase [Corynebacterium efficiens YS-314]
 gi|259164888|gb|EEW49442.1| proline--tRNA ligase [Corynebacterium efficiens YS-314]
          Length = 588

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 100/236 (42%), Positives = 141/236 (59%), Gaps = 1/236 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+YSWLPLG +AL N+  ++REE 
Sbjct: 4   RLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRVAPGVYSWLPLGLRALRNIEQVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  DAIGGQELLFPGLLPREPYETTQRWTEYGDSLFRLKDRKGADYLLGPTHEEMFASTVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T  G + SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDAGLEESYARHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            RIF RLG++ +  +A SG +GG  S EF+ ++  GE   F      DF    E  
Sbjct: 184 QRIFDRLGIEYVICKATSGAMGGSASEEFLAVSANGE-DTFVRATDGDFAANVEAV 238



 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 6/192 (3%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +    +  D  PE +     ARGIE+GHIF  G KY+          +GK     MG
Sbjct: 399 GFIEAAEIREGDPAPEGQGTLTLARGIEIGHIFQLGRKYTEAFDVQILDENGKRAIPTMG 458

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R++A + E  HD  G+ W  +VAP+++ ++     D    +A E+    LS+ 
Sbjct: 459 SYGIGVSRLLAVLAEQRHDEAGLNWSPAVAPYQVHVVAAN-KDAAAIEAAERYATELSQA 517

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G DV +DD      G +F  A+LLG P  +I+G +  +D  VE++ R  G + ++ ++E 
Sbjct: 518 GIDVLFDDRPKVSPGVKFKDAELLGMPFALILG-RGYADGTVELRVRG-GEKTELPVDEA 575

Query: 435 INYASHRFSNNR 446
           +       +  R
Sbjct: 576 VETIVRLVNEAR 587


>gi|296129352|ref|YP_003636602.1| prolyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
 gi|296021167|gb|ADG74403.1| prolyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
          Length = 597

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 105/270 (38%), Positives = 147/270 (54%), Gaps = 6/270 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASH+L++R G I + + GIY+WLPLG + L  V  ++REE 
Sbjct: 4   RMSTLFVRTLREDPADAEVASHRLLVRAGYIRRAAPGIYTWLPLGLRVLAKVEQVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+  P L   + +  +GR+  YG  + RL DR     +  PTHEE+ T + +  
Sbjct: 64  AAIGAQEVHFPALLPKEPYEATGRWTEYGPNIFRLKDRKGGDYLLAPTHEEMFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKDAYSFD+   G   SY     +Y
Sbjct: 124 YSSYKDLPLALYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDVDDAGLAASYEAQRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL+ + + A SG +GG  S EF+     GE     S       + +  T   +
Sbjct: 184 QRIFDRLGLEYVIVAATSGAMGGSRSEEFLTPTAIGEDTFVRSAGGYAANVEAVTTVVPE 243

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  V+    P A   D  +    D+L
Sbjct: 244 ------PVDASEVPAAHVEDTPDTPTIDTL 267



 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 87/203 (42%), Gaps = 31/203 (15%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+       ARGIE+GHIF  G KY+  +  T    +GK   V MG
Sbjct: 406 GTVEAAEVRAGDPAPDGSGPLELARGIEIGHIFQLGRKYAQALGLTVLDQNGKAQVVTMG 465

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+AA+ E++HD +G+ WP  VAP  + ++     D    +A E +   LS  
Sbjct: 466 SYGIGVTRVLAALAEANHDERGLAWPADVAPAHVHVLATG-KDAAVFEAAEALATTLSAR 524

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKF-------------VSDSKVEIKHR 421
           G +V +DD      G +FA A                            ++D  VE++ R
Sbjct: 525 GVEVLYDDRPKVSPGVKFADA--------------ELLGVPLVVVVGRGLADGVVEVRPR 570

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
             G  E + +    +  +     
Sbjct: 571 AGGTSEQVPVATAADRVAELVDE 593


>gi|195578689|ref|XP_002079196.1| GD23818 [Drosophila simulans]
 gi|194191205|gb|EDX04781.1| GD23818 [Drosophila simulans]
          Length = 747

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 148/432 (34%), Gaps = 40/432 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   I+ E  + G  E+ 
Sbjct: 342 EEAAKRDHRKIGREQELF--FFHELSPGSCFFQPRGAHIYNTLMGFIKAEYRKRGFQEVI 399

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW+ SG ++ Y + M       +K     P +      IF +  +S+R LP 
Sbjct: 400 SPNIYNAKLWMTSGHWEHYAENMFSFEAEKEK-FALKPMNCPGHCLIFDNRNRSWRELPL 458

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +               ++   G
Sbjct: 459 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAPEQIKSEM-KGCLEFLKYVYTIFG 517

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P       E    A+                  +     ++        
Sbjct: 518 FSFQLV-LSTRPDNYLGELEQWNDAEK-----------------ALAESLNEFGMPWKEN 559

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    +++L   A       K 
Sbjct: 560 PGDGAFYGPKIDI---TIMDALKRAHQCATIQLD----FQLPIRFNLSYIA---DDGEKK 609

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +     WP  ++P ++ ++ +           + + 
Sbjct: 610 RPVIIHRAILGSVERMIAILT---ENFAGKWPFWLSPRQVMVVPVGP---AYDQYAQAVR 663

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R   +  +
Sbjct: 664 DQLHDAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGE 723

Query: 429 MSLEEVINYASH 440
           +S+ E+I     
Sbjct: 724 VSVAELITKLQK 735


>gi|195351005|ref|XP_002042027.1| GM26732 [Drosophila sechellia]
 gi|194123851|gb|EDW45894.1| GM26732 [Drosophila sechellia]
          Length = 747

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 148/432 (34%), Gaps = 40/432 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   I+ E  + G  E+ 
Sbjct: 342 EEAAKRDHRKIGREQELF--FFHELSPGSCFFQPRGAHIYNTLMGFIKAEYRKRGFQEVI 399

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW+ SG ++ Y + M       +K     P +      IF +  +S+R LP 
Sbjct: 400 SPNIYNAKLWMTSGHWEHYAENMFSFEAEKEK-FALKPMNCPGHCLIFDNRNRSWRELPL 458

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +               ++   G
Sbjct: 459 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAPEQIKSEM-KGCLEFLKYVYTIFG 517

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P       E    A+                  +     ++        
Sbjct: 518 FSFQLV-LSTRPDNYLGELEQWNDAEK-----------------ALAESLNEFGMPWKEN 559

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    +++L   A       K 
Sbjct: 560 PGDGAFYGPKIDI---TIMDALKRAHQCATIQLD----FQLPIRFNLSYIA---DDGEKK 609

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +     WP  ++P ++ ++ +           + + 
Sbjct: 610 RPVIIHRAILGSVERMIAILT---ENFAGKWPFWLSPRQVMVVPVGP---AYDQYAQAVR 663

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R   +  +
Sbjct: 664 DQLHDAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGE 723

Query: 429 MSLEEVINYASH 440
           +S+ E+I     
Sbjct: 724 VSVAELITKLQK 735


>gi|78212568|ref|YP_381347.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Synechococcus
           sp. CC9605]
 gi|123756917|sp|Q3AKU0|SYT_SYNSC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78197027|gb|ABB34792.1| threonyl-tRNA synthetase [Synechococcus sp. CC9605]
          Length = 611

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 136/427 (31%), Gaps = 36/427 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD       L L + +  +   G+  W P G +    +    R+     G   + 
Sbjct: 203 EEALRRDHRRIGKDLDLFS-IEDEAGAGLVFWHPRGARIRLLIEEFWRQAHFEGGYELLY 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW  SG  D Y + M    + +++     P +       + S ++SYR LP 
Sbjct: 262 TPHVADISLWKTSGHLDFYAESMFGPMEVDEREYQLKPMNCPFHVLTYASKLRSYRELPI 321

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + ++   +R E      G+MR R F   DA+ F L  + S     K+     RI     
Sbjct: 322 RWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCLPEQISDE-ILKILDLTERILSAFD 380

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P                           D          +       I 
Sbjct: 381 FSNYEINLSTRPEKS-----------------IGEDAVWDLATKGLIEALERKGWAYKID 423

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E   A Y    D+   K+ D++    + S   ++    F    ++ L   A       + 
Sbjct: 424 EGGGAFYGPKIDL---KIEDAIGRMWQCSTIQLD----FNLPERFELDYIAA--DGSKQR 474

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             +   +      R    + E+                              +   E++ 
Sbjct: 475 PIMIHRAIFGSLERFFGIMTENYAGDYPFWLAPEQVRLLPVT-------DEVQPYAEQLL 527

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L+K G     D  G+++G      + +  P+  ++G+K    + V ++ R  G     
Sbjct: 528 DQLTKAGVRATVDRSGDRLGKLIRTGEQMKIPVLAVIGAKEAEQNAVSLRSRRDGDLGVT 587

Query: 430 SLEEVIN 436
           ++ ++++
Sbjct: 588 AVSDLLS 594


>gi|300783993|ref|YP_003764284.1| prolyl-tRNA synthetase [Amycolatopsis mediterranei U32]
 gi|299793507|gb|ADJ43882.1| prolyl-tRNA synthetase [Amycolatopsis mediterranei U32]
          Length = 582

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 99/221 (44%), Positives = 139/221 (62%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SH+L++R G + + + G YSWLPLG + L  + A++REE 
Sbjct: 4   RTSSLFLRTLREDPADAEVPSHRLLVRAGYVRRVAPGGYSWLPLGLRVLRRIEAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L   + +  +GR+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  NAMGAQEIQFPALLPREPYETTGRWTEYGDGLFRLKDRKGADYLLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SYR+ P T YQIQ K+RDE RPR G++R REF+MKD+YSFDL  EG   SY     +Y
Sbjct: 124 YSSYRDYPVTLYQIQTKYRDEARPRAGILRGREFVMKDSYSFDLDDEGLARSYQAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           +++F RLGL+ + ++A SG +GG  S EF+ +A+TGE    
Sbjct: 184 VKLFDRLGLEYVVVKATSGAMGGSASEEFLAVAETGEDTYV 224



 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 4/189 (2%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D+ P+     V+ARGIE+GHIF  G KY+        G D K   + MG
Sbjct: 396 GTIEAAEVREGDASPDGHGTLVAARGIEIGHIFQLGRKYTDAFEVDALGPDSKPIRITMG 455

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R+V  + E +HD  G+IWP   +PF +  I I   D+      EKI A L   
Sbjct: 456 SYGVGVSRLVGVLAEQNHDDLGLIWPRVASPFDVH-IVIAGKDETIAAGAEKIAAELDAA 514

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +FA A+L+G P  ++VG + +++  VE+K R +G RE++++E V+
Sbjct: 515 GVEVILDDRKATPGVKFADAELVGVPTILVVG-RGLANGVVEVKDRRSGEREEIAVEAVV 573

Query: 436 NYASHRFSN 444
            +      +
Sbjct: 574 EHLVKLVRS 582


>gi|229491972|ref|ZP_04385789.1| threonyl-tRNA synthetase [Rhodococcus erythropolis SK121]
 gi|229321104|gb|EEN86908.1| threonyl-tRNA synthetase [Rhodococcus erythropolis SK121]
          Length = 649

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 65/451 (14%), Positives = 132/451 (29%), Gaps = 50/451 (11%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      +L L +    +   G+  + P G      +    R      G
Sbjct: 215 YLELLAEAERRDHRKLGTELDLFS-FPDELGSGLPVFHPKGGIIRTEMENYSRSRHIEAG 273

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              ++ P +    L+  SG  D Y   M                 +  +     P +  +
Sbjct: 274 YEFVNTPHITKGHLYEVSGHLDWYRDGMFPAMHVDEELNEDGTVRKPGQDYYLKPMNCPM 333

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFR+  +SYR LP   ++    +R E      G+ R R     DA+ +    +    
Sbjct: 334 HNLIFRARGRSYRELPLRLFEFGSVYRYEKSGVIHGLTRVRGMTQDDAHIYCTREQMRDE 393

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                    L +    GL    +   +                    +   S D  +   
Sbjct: 394 L-TTTLQFVLNLLKDYGLDDFYLELST----------------KNPDKFVGSDDVWEEAT 436

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +     +             A Y       + ++ D+L    ++S   ++    F    
Sbjct: 437 ATLAEVGEASGLTLVPDPGGAAFYGPKI---SVQVKDALGRTWQMSTIQLD----FNLPE 489

Query: 293 KYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       + G DG K   V +     G++     V+   + G    W   V    I +
Sbjct: 490 RF----ELEYTGNDGVKTRPVMIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPV 545

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                  +   D    +  +L   G     D   +++  +         P  ++ G + V
Sbjct: 546 A------EAFADHLFDVTKKLKAAGVRAEVDFSDDRMQKKIRNHTTQKVPFMLLAGERDV 599

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               V  + R       + +++ +   +   
Sbjct: 600 EAGAVSFRFRDGTQINGIPVDDAVRIITEWI 630


>gi|281420278|ref|ZP_06251277.1| threonine--tRNA ligase [Prevotella copri DSM 18205]
 gi|281405773|gb|EFB36453.1| threonine--tRNA ligase [Prevotella copri DSM 18205]
          Length = 650

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 147/444 (33%), Gaps = 36/444 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L      +  KG+  WLP G +    +  ++R      
Sbjct: 232 EYLVILEEAKKRDHRKIGKEMELFM-FSERVGKGLPIWLPKGTQLRLRLQELLRSLLKPY 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P +    L+V SG Y  YGK+  +       D+  +  P +     +++    
Sbjct: 291 NYQEVICPGIGGKSLYVTSGHYAHYGKDAFQPIQTPEEDEEYMLKPMNCPHHCEVYARKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    FR E      G+ R R F   DA+ F  + +     +  +    
Sbjct: 351 RSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIFVRSDQVKSE-FENVIDVI 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L++F   G ++   +                       +   S +  +    +      +
Sbjct: 410 LKVFKIFGFENYEAQISLHD-------------PKDTEKYIGSDEIWEESENAIREACKE 456

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y    D     + D++    ++    ++                  
Sbjct: 457 KGLETREEVGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFKLE 505

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +     G++    AV+     G   +W           + I    + 
Sbjct: 506 YTAEDNSKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW------LTPDQVAILPISEK 559

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+   L K G     DD  E+IG +    +L   P  VIVG K  ++  V ++ 
Sbjct: 560 FNDYAQKVRQYLDKQGVRALVDDRNEKIGRKIRDNELKRVPYMVIVGEKESAEGLVSMRK 619

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           +  G +  MS+EE     +   + 
Sbjct: 620 QGGGEQATMSMEEFAQRINAEVAE 643


>gi|134301543|ref|YP_001121511.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|166980125|sp|A4IWT9|SYP_FRATW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|134049320|gb|ABO46391.1| prolyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 565

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 113/333 (33%), Positives = 187/333 (56%), Gaps = 6/333 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E     
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDYAANIELATYA 239

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             D    ++  + +E+   P   T +   +++   + +  +        G+ F    +  
Sbjct: 240 KPDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIKDAGGNFFALVIRGD 299

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             ++ T      +       +       +  A 
Sbjct: 300 HELNETKINKLDQIIAPYTLATKEEIFSIFNAN 332



 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/183 (37%), Positives = 103/183 (56%), Gaps = 3/183 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVG 376
           G G  RV+AA IE SHD  GIIWP+S+AP++++++ I        ++  +K+Y  L   G
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKIKEVADKLYQDLLGDG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I 
Sbjct: 503 IDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITIAELIK 562

Query: 437 YAS 439
              
Sbjct: 563 ILK 565


>gi|242024338|ref|XP_002432585.1| Threonyl-tRNA synthetase, cytoplasmic, putative [Pediculus humanus
           corporis]
 gi|212518045|gb|EEB19847.1| Threonyl-tRNA synthetase, cytoplasmic, putative [Pediculus humanus
           corporis]
          Length = 717

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/439 (16%), Positives = 134/439 (30%), Gaps = 44/439 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   IR E  + G  E+ 
Sbjct: 311 EEAAKRDHRKLGREQELY--FFHELSPGSCFFYPKGAFIYNTLVEFIRSEYRKRGFQEVI 368

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +  LW  SG +  Y + M       +      P +      IF +  +S+R LP 
Sbjct: 369 TPNIYNVKLWETSGHWQHYAENMFSFELEKET-YALKPMNCPGHCLIFDNRNRSWRELPL 427

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+E      G+ R R F   DA+ F  T    K   +        ++   G
Sbjct: 428 RMADFGVLHRNEFSGALSGLTRVRRFQQDDAHIFC-TVNQIKSEISGALEFLKNVYGVFG 486

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F +   T   +     +  D          D+      + 
Sbjct: 487 FT------------------FQLRLSTRPEKYLGEINVWDQAEKQLTESLDEFGFPWKLN 528

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    ++    +  + G  G  
Sbjct: 529 PGDGAFYGPKIDI---TILDALKRAHQCATIQLD----FQLPIRF----NLNYIGESGDK 577

Query: 310 HYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               +    I     R++A + ES             +      +          +  +K
Sbjct: 578 IRPVIIHRAILGSVERMIAILTESYGGKWPFWLSPRQSIVIPVGLP-------FYEYAKK 630

Query: 368 IYARLSKVGCDVFW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +   +   G    + DD G+ +  +   A L  +    +VG K  +   V ++ R   + 
Sbjct: 631 VKDDIFNAGFSCDFDDDEGDTMNKKIRNAQLAQYNFIFVVGEKEKNAGTVNVRTRDNIVH 690

Query: 427 EDMSLEEVINYASHRFSNN 445
            + S+ +VI          
Sbjct: 691 GEFSVGDVIKKFQELKEKR 709


>gi|315635477|ref|ZP_07890743.1| threonine--tRNA ligase [Arcobacter butzleri JV22]
 gi|315480235|gb|EFU70902.1| threonine--tRNA ligase [Arcobacter butzleri JV22]
          Length = 602

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 156/443 (35%), Gaps = 41/443 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +L+E   RD      +L L T        G+  WLP G +    +  ++ +     G
Sbjct: 197 YTRMLEEAKKRDHRKLGTELELFT-FNDDVGAGLPMWLPKGARLRSKLEHLLYKAHRIRG 255

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  A++W  SG Y +Y + M      +D+     P +      IF++++ SY
Sbjct: 256 YEPVRGPEILKAEMWKISGHYANYKENM-YFTTIDDQEYGIKPMNCVGHIQIFKNNLVSY 314

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP   ++  +  R E+     G+ R REF   D++ F    +  +  +  +       
Sbjct: 315 KELPKKLFEYGVVHRHEMSGAMHGLFRVREFTQDDSHIFCTQDQIKQVIFEVL------- 367

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                        ++     D  +E  V   T   +      F +          D+   
Sbjct: 368 ----------EFVDTLLKVFDFKYEIEV--STKPEKAIGDDIFWEKTTKGIMDALDENNI 415

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D++    +     +++     F        +  +  
Sbjct: 416 SYGIDEGGGAFYGPKIDI---KILDAIGRKWQCGTVQVDMNLPSRF--------NVEYIN 464

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G+      +    +G+      ++     G+            + +           +
Sbjct: 465 EKGEKEQPVMIHRAILGSFERFIGILTEHCAGEFPFIIAPTQVIFVPIA------DSHVE 518

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++   L +   D    +M E +  +  +A+    P+ V++G + V +  V +++R T
Sbjct: 519 YAKELQKALLENDLDSEIYNMNESLNKRIRMAEKQRVPMIVVIGDEEVENKTVALRNRRT 578

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
             + +MS  E I+  +   + +R
Sbjct: 579 REQSNMSKNEFISMLNEIKNGSR 601


>gi|284173635|ref|ZP_06387604.1| threonyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
 gi|261600981|gb|ACX90584.1| threonyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
          Length = 545

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 152/443 (34%), Gaps = 39/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +    D  +   KL L +    +   G+  + P GQ   + +   +RE  +  G
Sbjct: 128 YLTWLEKAEETDHRLIGEKLDLFSFH-EEAGSGLVLFHPKGQTLRNELITFMREINDSMG 186

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+    +   D+W  SG Y  Y  +++ + +         P +      I++S  ++Y
Sbjct: 187 YQEVYTSHVLKTDIWKISGHYTLYRDKLI-VFNMEGDEYGVKPMNCPAHILIYKSKPRTY 245

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +    +R E +   +G++R R F+  D + F    +  +     +  +    
Sbjct: 246 RDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLKEDQLKEEIKMLISKTVEVW 305

Query: 185 FHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                    I     + P     S E                   +    +  +   +  
Sbjct: 306 HKFGFKDDDIKPYLSTRPDESIGSDE-----------------LWEKATNALISALQESG 348

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E+  A Y    D    ++ DSL    ++S   ++    F    ++       + 
Sbjct: 349 LKFGIKEKEGAFYGPKIDF---EIRDSLGRWWQLSTIQVD----FNLPERF----KLEYI 397

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             DG       +     G++    A++     GK   W   ++P ++ ++ I        
Sbjct: 398 DKDGTKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTW---LSPVQVKVLPIT---DEVN 451

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+   + K       D  GE +  +   A   G P  +IVG K  S   V ++ R 
Sbjct: 452 EYAEKVLNDMRKRRIRAEIDYAGETLSRRIKNAYDQGVPYILIVGKKEASQGTVTVRARG 511

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
                ++  E+ ++      +  
Sbjct: 512 NIEVRNVKFEKFLDLMITEITQR 534


>gi|225550529|ref|ZP_03771478.1| threonine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225379683|gb|EEH02045.1| threonine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 580

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 157/444 (35%), Gaps = 34/444 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y + + +   RD       L L T   +   +G+  WLP G      V   I E + +  
Sbjct: 168 YLVDLQERKERDHRKIGKDLNLFT-FNNLAGQGLPIWLPNGTIIKSQVQKFINEVEFQFN 226

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S DL+  SG +D Y   +      +++ +I  P      T ++ + ++SY
Sbjct: 227 FDTVITPILGSIDLYKTSGHWDHYKDNIFSPVQIDNEVLILRPMTCPHHTLVYSNELRSY 286

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R E      G  R RE +++D + F    +         F      
Sbjct: 287 RSLPIRLSEHSILHRYESSGGLTGFERVREMILEDCHVFCRPDQIEHE-VINAFKMIQEA 345

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK-DFMDFPIPSENTDFDDII 243
              LG+K+  +                   D  + + +       +    +      D  
Sbjct: 346 QEGLGIKTFEIHLSLN--------------DPNDKEKYYDDPQMWEHSQNALRKMLKDHK 391

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                +    A Y    D   + +   L     VS   ++    F    ++    + ++ 
Sbjct: 392 IPYKEMVGEAAFYGPKIDFQVKTV---LNRIITVSTIQLD----FLLPNRF----NLSYI 440

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             + +     M    IG +     ++    +    + P  ++P ++ +I +  +  +  D
Sbjct: 441 NENNEQSTPVMIH--IGIIGTYERLLAILLEQTKGVLPLWLSPVQVVIIPVNEN--LHAD 496

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRL 422
             +++ A+L K       D   E++  +   A +   P Q++VG + + + K V  +   
Sbjct: 497 YAKELNAKLRKHLVRSSLDLRNERLSKKIREAQIQKIPYQIVVGDEEIKNDKMVTYRRYG 556

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           +     +S+++ I    +   + +
Sbjct: 557 SEETTTVSVDDFIKVLENDIRSKK 580


>gi|168702447|ref|ZP_02734724.1| threonyl-tRNA synthetase [Gemmata obscuriglobus UQM 2246]
          Length = 620

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 64/446 (14%), Positives = 138/446 (30%), Gaps = 35/446 (7%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
              + +   RD      +L L           G    LP G      +   I + + R G
Sbjct: 198 LARLEEAAKRDHRKVGRELDLFAN--EPVFGSGFPMLLPKGATIRRLLETFITDYERRAG 255

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIFRS 120
            + +  P +   +L+  SG +D Y   M    D      +D+ +   P        +++S
Sbjct: 256 YLHVFTPDIAKKELYKISGHWDHYKDSMFPPMDMGEGGNDDEELCLRPMCCPHHIQVYKS 315

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SYR+LP    ++   +R E     G +     +  +     + P+  KH    +   
Sbjct: 316 KARSYRDLPIRIAELGNMYRFERSGVVGGLSRVRCMTLNDAHLFVRPDQVKHEIAGVLQL 375

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             + +  LG+     R            +          +   +    +           
Sbjct: 376 MKKAYADLGITEYRFRLSKNADPDGPPSD----------KYVDNPAMWESSTKMLREVLQ 425

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +            A Y    DV   ++ D +   + +S    +      F          
Sbjct: 426 ESGMPFFEAWNEAAFYGPKIDV---QVKDVMGREETLSTIQADQHLPAKF--------EL 474

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            +K +D       M     G +  +  ++    +     +P  +AP +++++ I      
Sbjct: 475 EYKDSDDTPKRPVMIHR--GVISTMERMMSYLIELYAGAFPVWLAPVQVAIVPIADRH-- 530

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +K+   L      V  D   +++ ++   A L   P  +++G K +  + V ++ 
Sbjct: 531 -FAFAQKLGDELLDKDYRVDVDLGDKRMQAKIRDAQLQKIPYILVIGDKEMEANAVAVRL 589

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R           E +       + +R
Sbjct: 590 RDGTDLGAKPAAEFVAML-EAVAKSR 614


>gi|149499809|ref|XP_001513531.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2, partial
           [Ornithorhynchus anatinus]
          Length = 677

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 152/447 (34%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 260 KMMKTWEKFQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFLYNTLLDFIREE 317

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y + M    D   +     P +      +F  
Sbjct: 318 YHKRNFTEVVSPNVYNSKLWETSGHWQHYSENMFSF-DVEKETFALKPMNCPGHCLMFAH 376

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P       +  R+EL     G+ R R F   DA+ F +  +  +        
Sbjct: 377 RPRSWREMPIRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCMMEQIEEEM-KGCLQ 435

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  D          
Sbjct: 436 FLQSVYSVFGFS------------------FQLNLSTRPENFLGEIETWDQAEKQLQNSL 477

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 478 KEFGEPWKLNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 530

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +       K   V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 531 SKESDD--KKRPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP--- 582

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C +  ++I +   + G     D D    +  +   A L  +   ++VG K   ++ V +
Sbjct: 583 TCEEYAQQIRSEFFEAGFMADVDLDQSSTLNKKIRNAQLAQYNFILVVGEKEKGNNAVNV 642

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   I  ++S+   I        + 
Sbjct: 643 RTRDNKIHGEISVNSAIEKLKKLKKSR 669


>gi|332030887|gb|EGI70523.1| Threonyl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior]
          Length = 714

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 143/438 (32%), Gaps = 42/438 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   IR E  + G  E+ 
Sbjct: 309 EEAAKRDHRKIGKEQELY--FFHELSPGSCFFQPRGAYIYNTLVDFIRSEYRKRGFQEVV 366

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + ++ LW  SG +  Y + M    D   +     P +      IF    +S+R LP 
Sbjct: 367 TPNIFNSKLWQTSGHWQHYAENMFSF-DVEKETFALKPMNCPGHCMIFDVRCRSWRELPI 425

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F    +  R+EL     G++R R F   DA+ F    +      N        ++  LG
Sbjct: 426 RFADFGVLHRNELSGALTGLIRVRRFQQDDAHIFCSIDQIKDE-INGALDFLWHVYSILG 484

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F +   T   +        +    +     +      S+ 
Sbjct: 485 FT------------------FSLCLSTRPEKFLGDIKVWNEAEKALEESLNAFGQPWSLN 526

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
            +  A Y    DV    + D+L    + +   ++    F    ++    + ++    G+ 
Sbjct: 527 PEDGAFYGPKIDV---TILDALKRPHQTATIQLD----FQLPIRF----NLSYVNEAGEK 575

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +    +G++  + A++  S+                    +        D   ++
Sbjct: 576 TRPIIIHRAILGSVERMIAILTESYG------GKWPYWISPRQAMVVPVASQFDDYAFEV 629

Query: 369 YARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             +L   G  V  D D  + +  +   A L  F   ++VG K  +   V I+ R   +  
Sbjct: 630 KQKLWDAGVMVEIDIDPSDTLNKKIRNAQLAQFNFILVVGEKERNAGTVNIRTRDNVVHG 689

Query: 428 DMSLEEVINYASHRFSNN 445
           +M+++E+I          
Sbjct: 690 EMAVDELITKLKILKETR 707


>gi|229820980|ref|YP_002882506.1| prolyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
 gi|229566893|gb|ACQ80744.1| prolyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
          Length = 586

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 106/278 (38%), Positives = 151/278 (54%), Gaps = 2/278 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ FL  L+E+P DAE+ SH+L++R G I + + GIY+WLPLG + L  V AI+REE +
Sbjct: 1   MSRLFLRTLREDPVDAEVDSHRLLVRAGYIRRAAPGIYTWLPLGLRVLARVEAIVREEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  SGR+ +YG+ + RL DR +   +  PTHEE+ T + +   
Sbjct: 61  AAGAQEVHFPALLPREPYEASGRWTTYGQGIFRLKDRREGDYLLAPTHEEMFTLLVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFD+     + SY+    +Y 
Sbjct: 121 SSYKDLPLTLYQIQTKYRDEARPRAGLLRGREFIMKDAYSFDVDLARFERSYDAQRHAYQ 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF RLGL+ + ++A SG +GG  S EF+     GE     S       + +  T   + 
Sbjct: 181 RIFDRLGLEYVIVKASSGLMGGTRSEEFLSPCAIGEDTFVRSPGGYAANVEAVTTPVPEA 240

Query: 243 ISLNSIVEQ--WTAPYAATSDVHNEKLFDSLPENKRVS 278
           I             P   T +          P   R  
Sbjct: 241 IPYEDAPPAHVEDTPDTPTIETLVAHANAHQPRADRAW 278



 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 5/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+       ARGIE+GHIF  GT +S  +  T    +GK     MG
Sbjct: 395 GTIEAAEVRPGDPAPDGSGPLELARGIEIGHIFDLGTTFSDALGLTVLDENGKAIVPTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E+ HD +G+ WP  VAP ++ ++     D V   A E   A  +  
Sbjct: 455 SYGVGVSRAVAALAETHHDERGLTWPVHVAPAQVHIVATGKDDAVFAAAEELGAAL-TAR 513

Query: 376 GCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             DV  DD      G +FA  +LLG P+ V+VG + ++D  +E++ R + +RED+ +   
Sbjct: 514 RIDVLLDDRRKVSAGVKFADGELLGMPVIVVVG-RGLADGTIEVRLRASDLREDVEVARA 572

Query: 435 INYASHRF 442
            ++ +   
Sbjct: 573 ADHVAELV 580


>gi|171920625|ref|ZP_02695822.2| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|188524282|ref|ZP_03004325.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195867906|ref|ZP_03079904.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198273446|ref|ZP_03205982.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209554092|ref|YP_002284982.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|238065120|sp|B5ZC42|SYT_UREU1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|171903344|gb|EDT49633.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|195660016|gb|EDX53396.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195660383|gb|EDX53642.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198249966|gb|EDY74746.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209541593|gb|ACI59822.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
          Length = 580

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 157/444 (35%), Gaps = 34/444 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y + + +   RD       L L T   +   +G+  WLP G      V   I E + +  
Sbjct: 168 YLVDLQERKERDHRKIGKDLNLFT-FNNLAGQGLPIWLPNGTIIKSQVQKFINEVEFQFN 226

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S DL+  SG +D Y   +      +++ +I  P      T ++ + ++SY
Sbjct: 227 FDTVITPILGSIDLYKTSGHWDHYKDNIFSPVQIDNEVLILRPMTCPHHTLVYSNELRSY 286

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R E      G  R RE +++D + F    +         F      
Sbjct: 287 RSLPIRLSEHSILHRYESSGGLTGFERVREMILEDCHVFCRPDQIEHE-VINAFKMIQEA 345

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK-DFMDFPIPSENTDFDDII 243
              LG+K+  +                   D  + + +       +    +      D  
Sbjct: 346 QEGLGIKTFEIHLSLN--------------DPNDKEKYYDDPQMWEHSQNALRKMLKDHK 391

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                +    A Y    D   + +   L     VS   ++    F    ++    + ++ 
Sbjct: 392 IPYKEMVGEAAFYGPKIDFQVKTV---LNRIITVSTIQLD----FLLPNRF----NLSYI 440

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             + +     M    IG +     ++    +    + P  ++P ++ +I +  +  +  D
Sbjct: 441 NENNEQSTPVMIH--IGIIGTYERLLAILLEQTKGVLPLWLSPVQVVIIPVNEN--LHAD 496

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRL 422
             +++ A+L K       D   E++  +   A +   P Q++VG + + + K V  +   
Sbjct: 497 YAKELNAKLRKHLVRSSLDLRNERLSKKIREAQIQKIPYQIVVGDEEIKNDKMVTYRRYG 556

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           +     +S+++ I    +   + +
Sbjct: 557 SEETTTVSVDDFIKVLENDIRSKK 580


>gi|159030629|emb|CAO88297.1| thrS [Microcystis aeruginosa PCC 7806]
          Length = 599

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 150/442 (33%), Gaps = 39/442 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 187 EEALKRDHRKLGKELGLFI-FSDSVGPGLPLWTPKGTLIRSLLEDFLKKEQLKRGYLPVV 245

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  +   ++++       +  P +      I++S ++S
Sbjct: 246 TPHIARVDLFKISGHWQKYKEDMFPMMADDEESASKEIGFVLKPMNCPFHIQIYKSDLRS 305

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    +    +R E     G +        D     +TPE     +  +    L +
Sbjct: 306 YRELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPEQLDKEFLSVVDLILTV 365

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F  L LK+   R                  D    +   S +  +    +       +  
Sbjct: 366 FKSLQLKNFKARLS--------------FRDPESDKYIGSDEAWEKAQSAIRKAVQTLGM 411

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    D       D+L    ++    ++                  +  
Sbjct: 412 DYFEAPGEAAFYGPKLDFI---FQDALEREWQLGTVQVDYNLP--------ERFELEYVA 460

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +     G++  +  ++    +     +P  +AP +I L+ +        D
Sbjct: 461 EDGNRKRPVMIHRAPFGSLERLIGILI---EEYAGDFPLWLAPVQIRLLPV---SDSQLD 514

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  ++  +G     D  GE++G     A+    P+  +VG+K +  + + I+ R  
Sbjct: 515 YAKEVTVKMQLLGIRAETDTSGERLGKMIRNAETAKIPVMAVVGAKEMESNSLSIRTRAA 574

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    +S+EEV+        N+
Sbjct: 575 GDLGVISVEEVVAKLESAIQNH 596


>gi|317495744|ref|ZP_07954109.1| prolyl-tRNA synthetase [Gemella moribillum M424]
 gi|316914197|gb|EFV35678.1| prolyl-tRNA synthetase [Gemella moribillum M424]
          Length = 566

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 128/411 (31%), Positives = 187/411 (45%), Gaps = 35/411 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P  +E P  AE  SHKL+++ GM+ Q S G+Y++LPL  K + N+  +IREE
Sbjct: 1   MRQSRTFIPTTREVPSSAEAISHKLLIKAGMVKQVSAGVYTYLPLATKVIQNIERVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E+ +P LQS D W ESGR+   G E++RL DR        PT EE++     +
Sbjct: 61  HDKIGAVELLMPLLQSEDYWKESGRWYKMGDELMRLKDRKGAGYALSPTAEEIICQTVNN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPR G++R +EF+MKD YSF  +PE  + +Y   + +
Sbjct: 121 MLTSYKQLPMNLYQIQTKFRDEMRPRLGLLRGKEFIMKDGYSFHDSPESLRETYLDYYNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y  IF R  LK   ++A+SG IGG  +HEF  LA+ GE  +  ++   D+    E     
Sbjct: 181 YSNIFDRFELKYRAVKADSGNIGGSYTHEFQALAEIGEDTIAYTE-ESDYAANIETAAVV 239

Query: 238 ----------DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-----PENKRVSARGI 282
                     +  +   L +  +Q     AA   V   +   +L      E   V  RG 
Sbjct: 240 EQNYTIPSGFEKKERELLETPDQQTIDDIAAYCGVEVNRAMKALALKADGEFYLVLMRGN 299

Query: 283 EV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           +      F   T  S    AT +  +     V       G       VI  +        
Sbjct: 300 DQLNDIKFMKATGTSEVEMATEQEIEEVMGSVVGYMGPFGI--KNCKVIGDNAIKYMYNH 357

Query: 341 PDSVAPFKISLINIKAHDQVCRDACE-------KIYARLS-----KVGCDV 379
                      IN+   D       +        I   LS       G +V
Sbjct: 358 SCGANKKGYHYINVNPGDYEVDAYYDLRMIEEGDIAEDLSGKIKFAKGIEV 408



 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 71/165 (43%), Positives = 102/165 (61%), Gaps = 1/165 (0%)

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            K   A+GIEVG +F  G  YS  M+ T+  A+G+ ++  MG YGIG  RV++A+IE  +
Sbjct: 398 GKIKFAKGIEVGQVFELGKGYSEAMNITYLDANGRANHFYMGCYGIGVSRVISAIIEQHN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D KGIIWP  VAPF++ L+ +    Q   +  EK+YA L+  G  V +DD  E+ G +F 
Sbjct: 458 DEKGIIWPKEVAPFQVHLVCVDVKKQEQLELSEKLYAELTSAGYTVLYDDRAERAGVKFN 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            ADL+G PLQV+VG K  ++  VE+K R T  + D S+ EV++  
Sbjct: 518 DADLIGIPLQVVVGKK-ATEGIVEVKERKTLEKVDTSITEVLSKV 561


>gi|315930217|gb|EFV09332.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 305]
          Length = 602

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 152/444 (34%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L T    +   G+  WL  G +    +  ++ +   
Sbjct: 194 LKEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHR 252

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S +
Sbjct: 253 LRGYEPVRGPELLKADAWKISGHYANYKENM-YFTQIDEQEYGIKPMNCVGHIKIYQSDV 311

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++    
Sbjct: 312 RSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFV 370

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +                               T   +     +  +    +     D+
Sbjct: 371 DNLMKLFDFSYEMEI------------------STKPEKAIGDDEIWEIATKALKEALDE 412

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D+L    +     ++    F   +++       
Sbjct: 413 QGLKYGIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPSRF----KLE 461

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +D +      +    +G+      ++            +       + + I    + 
Sbjct: 462 YTDSDNEKKQPVMLHRAILGSFERFIGILTEHC------AGEFPFFIAPTAVGIVPIGEA 515

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  ++I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V ++ 
Sbjct: 516 HIDYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALRD 575

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    ++++SL+E I     + S 
Sbjct: 576 RRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|294786669|ref|ZP_06751923.1| proline--tRNA ligase [Parascardovia denticolens F0305]
 gi|294485502|gb|EFG33136.1| proline--tRNA ligase [Parascardovia denticolens F0305]
          Length = 601

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 107/284 (37%), Positives = 154/284 (54%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DA++ S KL++R G I +   G+YSWLPLG K L+ + AIIREE 
Sbjct: 11  RMSTLFLRTLRDDPADADVDSAKLLIRAGYIRKIGPGLYSWLPLGLKVLNKIEAIIREEI 70

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P +   + +  S R++ YG  + R  DR+    +  PTHEE+ T + +  
Sbjct: 71  NALGAQEVHFPAMMPREPYQMSNRWEEYGDNIFRFKDRHGADYLLAPTHEEMFTLMVKDM 130

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R R+F+MKDAYSFD+  EG K SY     +Y
Sbjct: 131 YTSYKDLPVTLYQIQGKYRDEFRPRAGMIRGRQFVMKDAYSFDIDEEGLKKSYLAERAAY 190

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIFHRL +  + + A SGP+GG  S EF+     GE     +     + + +  T   D
Sbjct: 191 ERIFHRLAVDYVIVHAVSGPMGGSESEEFLAPLPIGEDTFALAPSGKAWNVEALTTPAMD 250

Query: 242 IISLNSIVEQWTA--PYAATSDVHNEKLFDSLPENKRVSARGIE 283
            +  +          P + T D    +L  S P     +    +
Sbjct: 251 PVDYSQTPAATVVDTPDSPTIDSLVSQLNASSPREDGRAWAASD 294



 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 89/172 (51%), Gaps = 2/172 (1%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   RG+E+G +F  G KYS  M       +GK   V MG YGIG  RV++ + E+
Sbjct: 428 GSGPLSFERGVEIGQVFQLGLKYSKAMGLNVLNQNGKAVPVWMGCYGIGVSRVMSCIAEA 487

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
            HD KG+IWP SVAP ++ LI     DQ   D  E +   L K   +V +DD      G 
Sbjct: 488 HHDDKGLIWPLSVAPAQVHLIATG-KDQKAYDLAESLLGDLEKADVEVLYDDRAKMSPGV 546

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +F  ++LLG P+ V+VG   +SD  VEI++R TG ++ + L++         
Sbjct: 547 KFKDSELLGLPMIVVVGRDTLSDGTVEIRNRATGEKDVVPLDQAAQAVQDLL 598


>gi|15896426|ref|NP_349775.1| prolyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|81854743|sp|Q97ED5|SYP_CLOAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|15026247|gb|AAK81115.1|AE007813_2 Prolyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|325510583|gb|ADZ22219.1| prolyl-tRNA synthetase [Clostridium acetobutylicum EA 2018]
          Length = 570

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 119/263 (45%), Positives = 163/263 (61%), Gaps = 2/263 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S   +  L+E+P +AEI SHKLMLR+GMI + + G+Y+++PLG KAL  V  IIREE
Sbjct: 1   MKMSNMLMLTLRESPAEAEIESHKLMLRSGMIRKMASGVYNYMPLGLKALKKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA E     L  ++LW ESGR++ +G EM +L DRN++    GPTHEEV TD  RS
Sbjct: 61  MNAAGAQEFLASALLPSELWKESGRWEVFGPEMFKLKDRNEREFCLGPTHEEVFTDFARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPRFG++RSREF+MKDAYSFD   EG   SYNKM+ +
Sbjct: 121 EIKSYKQLPVNLYQIQTKYRDERRPRFGMIRSREFVMKDAYSFDKDNEGLDVSYNKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R  +    + A+SG +GG  S EF+V ++ GE ++    +        +     
Sbjct: 181 YTKIFKRCNVSCSAVAADSGAMGGSGSAEFMVKSEIGEDEIAFCTECNYAANIEKAPAVP 240

Query: 241 DIISLNSIVE--QWTAPYAATSD 261
           +      + E  +   P+A T +
Sbjct: 241 EKADKEELGELKKVETPHAKTIE 263



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 74/209 (35%), Positives = 106/209 (50%), Gaps = 3/209 (1%)

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSL 296
            ++     +             D  N    +  P+       ARGIEVGHIF  GTKYS 
Sbjct: 358 ANETGYHYANANYDRDFKGTVGDFRNAVEGEKCPKCGKPLTIARGIEVGHIFKLGTKYSE 417

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            M A F   +G+   + MG YGIG  R ++AV+E  HD  GI+WP SVAP+++ ++    
Sbjct: 418 AMKAYFVDENGESKPLIMGCYGIGVNRTMSAVVEQHHDDNGIVWPLSVAPYEVIVVPAVF 477

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +      EK+Y  L K+G D   DD  E+ G +F  ADL+G P+++ VG K +S+ KV
Sbjct: 478 KSEEQMKEAEKLYTELKKIGVDALLDDRNERAGVKFKDADLIGIPMRITVGKK-ISEGKV 536

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E K R +   E + L++VI      F  N
Sbjct: 537 EFKCRNSEEVEVIDLDKVIARVEEEFEKN 565


>gi|308176793|ref|YP_003916199.1| proline--tRNA ligase [Arthrobacter arilaitensis Re117]
 gi|307744256|emb|CBT75228.1| proline--tRNA ligase [Arthrobacter arilaitensis Re117]
          Length = 595

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 108/279 (38%), Positives = 153/279 (54%), Gaps = 2/279 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S  FL  L+E+P DAE+ASHKL++R G I + + GIY+WLPLG K L  V AI+REE 
Sbjct: 4   KLSTTFLRTLREDPVDAEVASHKLLVRAGYIRRAAPGIYTWLPLGLKVLARVEAIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L   + + ++GR+  YG  + RL DR D   +  PTHEE+ T + +  
Sbjct: 64  NAIGAQEVHFPALLPREPYEQTGRWAEYGDGLFRLKDRKDADYLLAPTHEEMFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSF++  EG   +Y     +Y
Sbjct: 124 YNSYKDLPVYLYQIQNKYRDEARPRAGLLRGREFIMKDSYSFNIDDEGLDEAYMAHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L+IF RLGL+ +P+ A++G +GG  S EF+     GE     S       + +  T   +
Sbjct: 184 LKIFERLGLEVVPVFAQAGAMGGSKSEEFLHPTAIGEDTFVRSPGGYAANVEAVTTVVPE 243

Query: 242 II--SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            I  +     E    P   T +          P      
Sbjct: 244 AIEYTNAPAFEVLDTPDTPTIETLVAAANSLRPRESGAW 282



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/185 (36%), Positives = 97/185 (52%), Gaps = 5/185 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +  N    D  P+      + RGIE+GHIF  G KY+  ++      +GK   V MG
Sbjct: 412 GTIESVNVVAGDPAPDGSGPLRTERGIEMGHIFQLGRKYAEALNLKVLDQNGKQTVVTMG 471

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R VAA+ E+ HD  G+ WP  VAP  I  I +        +A EK+  +    
Sbjct: 472 SYGIGVTRAVAALAEAYHDENGLAWPKQVAPADIH-IVVTGKGPELLEAAEKLAGQFEAA 530

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V  DD      G +F+ A+L+G P  V+VG + ++D  VE+K R TG R D+++E V
Sbjct: 531 GKEVILDDRPKVSAGVKFSDAELIGIPTIVVVG-RGLADGVVEVKDRATGERRDVNVENV 589

Query: 435 INYAS 439
           +   +
Sbjct: 590 VAELT 594


>gi|318056620|ref|ZP_07975343.1| prolyl-tRNA synthetase [Streptomyces sp. SA3_actG]
 gi|318080757|ref|ZP_07988089.1| prolyl-tRNA synthetase [Streptomyces sp. SA3_actF]
          Length = 563

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 111/269 (41%), Positives = 155/269 (57%), Gaps = 4/269 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + + + GI+SWLPLG+K LDN++ I+REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRTAAGIWSWLPLGKKVLDNISQIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGAQEVLLPALLPREPYEASGRWEEYGDLLFRLKDRKGADYLLGPTHEEIFTQVVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ+Q K+RDE RPR GV+R REF+MKD+YSFD T EG   SY     +Y
Sbjct: 126 CTSYKDLPVMLYQVQTKYRDEARPRSGVLRGREFVMKDSYSFDTTEEGLAESYALHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
            +IF RLGL    + A SG +GG  S EF+  A  GE   F       F   +E   F  
Sbjct: 186 RKIFARLGLDYRIVSAVSGAMGGSASEEFLAPAAAGE-DTFADCPNCGFAANTEAVTFKG 244

Query: 240 -DDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +   S +  VE+   P   T +   E L
Sbjct: 245 AEVDGSAHGPVEELDTPDTPTIESLAEHL 273



 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 89/177 (50%), Gaps = 6/177 (3%)

Query: 266 KLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           +  D  P   +     R IE+GHIF  G KY+        G +GK   V MGSYGIG  R
Sbjct: 389 EEGDPCPNCGQGLHLDRAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVSR 448

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            VAA+ E + D KG+ WP  V+P  +    + A   +  +   +I  +L+  G  V  DD
Sbjct: 449 AVAALAEQTADDKGLCWPAEVSPADVH--VVAAGKVLQTELALEIADKLAAAGARVLVDD 506

Query: 384 M-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             G   G +F  A+L+G P  VI G +      VE+K R TG RE++S+EE +   +
Sbjct: 507 RAGVSPGVKFTDAELIGVPKTVIAGRRSAE-GIVELKDRRTGEREELSVEEAVARLT 562


>gi|170782218|ref|YP_001710551.1| prolyl-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|189083492|sp|B0RDZ1|SYP_CLAMS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169156787|emb|CAQ01950.1| prolyl tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 590

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 109/284 (38%), Positives = 153/284 (53%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+  L+E+P DAE+ASH+L++R G I + + GI++WLPLG +  + V AI+REE 
Sbjct: 4   RLSKLFVRTLREDPVDAEVASHRLLVRAGYIRRQAPGIFAWLPLGLRVKNKVEAIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R GA E+  P L  A+ +  +GRYD YG  M RL DR    M+  PTHEE    + +  
Sbjct: 64  ERIGAQEVHFPALLPAEPYQATGRYDEYGPGMFRLEDRKRAPMVLAPTHEEFFALLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + YQIQ K+RDE RPR G++R REF MKDAYSFD T  G   SY     +Y
Sbjct: 124 YSSYKDLPLSIYQIQDKYRDEARPRAGILRGREFTMKDAYSFDHTDAGLAVSYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL+ + + A++G +GG  S EF+     GE     S       + +  T   +
Sbjct: 184 ERIFQRLGLEYVIVAADAGAMGGSKSEEFLHPTPIGEDTFVRSPGGYAANVEAFTTLVPE 243

Query: 242 IISLNSI--VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
            I +        + +P   T     +      P     +    +
Sbjct: 244 SIPIEGQPAARVFDSPDTPTIQTLVDLANAREPREDGRAWTAAD 287



 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 5/180 (2%)

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +  + +  D  P+     +  RG E+GH+F  G KY+  +       +GK   V MG
Sbjct: 405 GVVEAADVRDGDPAPDGSGPISTARGTEIGHVFELGRKYAEALGLKVLDENGKLVTVTMG 464

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R +A V E++ DG+G++WP S++PF +  + +   D     A E++   L   
Sbjct: 465 SYGIGITRNLALVAEATQDGRGLLWPASISPFDVH-VVMTGKDPAVGTAAEELVDALDAA 523

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G DV +DD      G +F  A+L+G P  VIVG +   D   E+  R T  R  ++L +V
Sbjct: 524 GLDVLFDDRPKVSPGVKFGDAELIGVPTVVIVG-RGAVDGMAELWDRRTNERTPVALADV 582


>gi|332678669|gb|AEE87798.1| Prolyl-tRNA synthetase Bacterial type [Francisella cf. novicida
           Fx1]
          Length = 565

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 113/333 (33%), Positives = 187/333 (56%), Gaps = 6/333 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E     
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDYAANIELATYA 239

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             D    ++  + +E+   P   T +   +++   + +  +        G+ F    +  
Sbjct: 240 KPDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIKDAEGNFFALVIRGD 299

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             ++ T      +       +       +  A 
Sbjct: 300 HELNETKINKLEQIVAPYTLATKEEIFSIFNAN 332



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/183 (37%), Positives = 103/183 (56%), Gaps = 3/183 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVG 376
           G G  RV+AA IE SHD  GIIWP+S+AP++++++ I        ++  +K+Y  L   G
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKVKEVADKLYQDLLGDG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I 
Sbjct: 503 IDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITIAELIK 562

Query: 437 YAS 439
              
Sbjct: 563 ILK 565


>gi|172040525|ref|YP_001800239.1| prolyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109]
 gi|226699134|sp|B1VGB6|SYP_CORU7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|171851829|emb|CAQ04805.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 592

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 98/236 (41%), Positives = 141/236 (59%), Gaps = 1/236 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ASHKL++R G I + + G+YSWLP+G + L  V  ++R E 
Sbjct: 4   RMSSLFLHTLRDDPADAELASHKLLVRAGYIRRVAPGVYSWLPMGLRVLRKVENVVRREM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L   + +  + R+D YG E+ RL DR +   + GPTHEE+ T + +  
Sbjct: 64  DAIGGQELMFPALLPKEPYEVTRRWDEYGPELFRLKDRKEADYLLGPTHEELFTWLVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSF++T EG   SY     +Y
Sbjct: 124 LNSYKDFPKVLYQIQTKYRDEARPRAGILRGREFVMKDSYSFNMTDEGLDESYRLHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            RIF  LG++ +   A SG +GG  S EF+ +A  GE   F      D+    E  
Sbjct: 184 QRIFDALGIEYVICYATSGAMGGSASEEFLAVAADGE-DTFVRSTESDYAANVEAV 238



 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 5/184 (2%)

Query: 260 SDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +    +  D  P+ K V    RGIE+GHIF  G KY+          +G+     MGSY
Sbjct: 407 VEAAEVREGDPSPDGKGVLTLSRGIEIGHIFQLGRKYTEAFDVQILDENGRRTVPTMGSY 466

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R++A V E  HD KG+ WP S+AP+ +  + I   D+   +A  ++   LS  G 
Sbjct: 467 GIGVSRLLAVVAEQMHDEKGLRWPRSIAPYDVH-VVIANKDEAAGEAARELAEALSDAGL 525

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +V +DD      G +F  ++LLG P  V+VG +  ++ KVE++ RL   R ++   + ++
Sbjct: 526 EVLFDDRPKVSPGVKFKDSELLGMPQVVVVG-RGFAEGKVELRDRLNDERSEIDYADAVD 584

Query: 437 YASH 440
             + 
Sbjct: 585 VITK 588


>gi|324998197|ref|ZP_08119309.1| prolyl-tRNA synthetase [Pseudonocardia sp. P1]
          Length = 577

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 175/385 (45%), Gaps = 29/385 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DAE+ SHKL++R G + + + G+YSWLPLG K L  +  ++REE +
Sbjct: 1   MSSLFLRTLREDPADAEVPSHKLLVRAGYVRRVAPGVYSWLPLGLKVLRRIENVVREEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P L   + +  + R+  YG  + R+ DR     + GPTHEE+ T   +   
Sbjct: 61  AMGGQEIQFPALLPREPYEATNRWTEYGPALFRIQDRKGGDYLLGPTHEELFTLAVKGEY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFDL+ EG   SY K   +Y+
Sbjct: 121 SSYKDYPVVLYQIQTKYRDEERPRAGILRGREFLMKDSYSFDLSDEGLSESYGKHRDTYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF RL LK + + A SG +GG  S EF+  ++TGE                 +T     
Sbjct: 181 RIFDRLALKYVIVAATSGAMGGSASEEFLAESETGE-----------------DTFVRGP 223

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               + VE  T P      +      D LP          +   I    T  +     TF
Sbjct: 224 GGYAANVEAVTTPAPPAIPL------DGLPAA--QVHHTPDTPTIETLVTYLNEHTDRTF 275

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             AD   + +       GA R     +    D +  +     A     +  ++  D    
Sbjct: 276 TAADTLKNVLVKTRQP-GAERWELVGVGVPGDREVDMKRLEAALEPAQVELLEEADFARN 334

Query: 363 DACEKIY---ARLSKVGCDVFWDDM 384
               K Y   A L+  G     D  
Sbjct: 335 AFLVKGYIGPAALAANGVRYLVDPR 359



 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/184 (36%), Positives = 97/184 (52%), Gaps = 4/184 (2%)

Query: 258 ATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+   V  +ARGIE+GHIF  G KY+   S    G D K   + MG
Sbjct: 390 GTIEAAEVRAGDPSPDGDGVLEAARGIEIGHIFQLGRKYADAFSLDALGPDSKPVRITMG 449

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VAA+ E  HD  G++WP SVAPF + ++          +  E + A L   
Sbjct: 450 SYGIGVSRLVAAIAEQCHDDSGLVWPRSVAPFDVHVVVAG-KSAELLEGGEVLAAELEAE 508

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  DD     G +FA A+L+G P  V+VG + ++D K+E+K R TG R ++  +   
Sbjct: 509 GLSVILDDRKASPGVKFADAELVGVPTIVVVG-RGLADGKIELKDRATGERTEIPRDGAA 567

Query: 436 NYAS 439
            + +
Sbjct: 568 AHVA 571


>gi|291404015|ref|XP_002718268.1| PREDICTED: threonyl-tRNA synthetase-like 2-like [Oryctolagus
           cuniculus]
          Length = 709

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 154/443 (34%), Gaps = 40/443 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +  + +E   RD      +  L     H  S G   +LP G      +  +IREE
Sbjct: 292 KMMKTWEQVQEEAKNRDHRKIGKEQELF--FFHDVSPGSCFFLPRGAFVYSTLMDLIREE 349

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++   +E+  P + ++ LW  SG +  Y + M       +      P +      +F  
Sbjct: 350 YHKRDFLEVLSPNVYNSKLWETSGHWQHYSENMFTFRVEKET-FALKPMNCPGHCLMFAH 408

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 409 RPRSWREMPVRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLQ 467

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E    A+                        
Sbjct: 468 FLQSVYSTFGFTFQLN-LSTRPENFLGESEMWAEAEK-----------------QLQNSL 509

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 510 VEFGKPWKLNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 562

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 563 SK--DGDDKKRPVIIHRATLGSVERMVAILS---ENCGGKWPLWLSPRQVMVIPVGP--- 614

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C     ++Y    + G     D D    +  +   A L  +   ++VG K ++++ V +
Sbjct: 615 TCEKYALQVYNEFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEMANNAVNV 674

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R   I  ++S+   I    + 
Sbjct: 675 RTRDNKIHGEISVISAIEKLKNL 697


>gi|289705559|ref|ZP_06501951.1| threonine--tRNA ligase [Micrococcus luteus SK58]
 gi|289557788|gb|EFD51087.1| threonine--tRNA ligase [Micrococcus luteus SK58]
          Length = 672

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/456 (14%), Positives = 129/456 (28%), Gaps = 49/456 (10%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L +   RD      +L L +    +   G+  + P G      +    R     
Sbjct: 247 KAYQERLAEAERRDHRKLGAELDLFS-FPDELGSGLPVFHPRGGIIRKEMEDYSRRRHTE 305

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-------------RNDKAMIYGPTH 110
            G   +  P +    L+  SG  D Y   M                  R  +     P +
Sbjct: 306 AGYEFVYTPHITKQHLYEVSGHLDWYADGMFPPMHIDEVRDPETGEITRQGQNYYLKPMN 365

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
             +   I+RS  +SYR LP   ++    +R E      G+ R R     DA+ +    + 
Sbjct: 366 CPMHNLIYRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYCTREQM 425

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
            +          L +    GL    +   +                    +   S +  +
Sbjct: 426 KEEL-TTTLNFVLDLLKDYGLNDFYLELST----------------KDPEKFVGSDEIWE 468

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
               +     +             A Y       + +  D++    ++S   ++    F 
Sbjct: 469 EATRTLAEVAEASGLQLVPDPGGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FN 521

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
              ++ L   A       +   V +     G++     V+   + G    W        I
Sbjct: 522 LPERFDLEYQAA---DGTRQRPVMIHRALFGSIERFLGVLTEHYAGAFPAWLAPEQVVAI 578

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +       +   D  + + A+L   G     DD  ++   +   A     P  +I G +
Sbjct: 579 PVA------EAFNDYLDDVVAKLRAEGIRARLDDSSDRFPKKIRTAAKEKAPFVLIAGGE 632

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
               + V  + R       + +EE I          
Sbjct: 633 DREANAVSFRFRDGTQDNGVPVEEAIERIVKAVRER 668


>gi|148273336|ref|YP_001222897.1| prolyl-tRNA synthetase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|166980116|sp|A5CSZ7|SYP_CLAM3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|147831266|emb|CAN02222.1| proS [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 590

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 106/245 (43%), Positives = 145/245 (59%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+  L+E+P DAE+ASH+L++R G I + + GI++WLPLG +  + V AI+REE 
Sbjct: 4   RLSKLFVRTLREDPVDAEVASHRLLVRAGYIRRQAPGIFAWLPLGLRVKNKVEAIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R GA E+  P L  A+ +  +GRYD YG  M RL DR    M+  PTHEE    + +  
Sbjct: 64  ERIGAQEVHFPALLPAEPYQATGRYDEYGPGMFRLEDRKRAPMVLAPTHEEFFALLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + YQIQ K+RDE RPR G++R REF MKDAYSFD T  G   SY     +Y
Sbjct: 124 YSSYKDLPLSIYQIQDKYRDEARPRAGILRGREFTMKDAYSFDHTDAGLAVSYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL+ + + A++G +GG  S EF+     GE     S       + +  T   +
Sbjct: 184 ERIFQRLGLEYVIVAADAGAMGGSKSEEFLHPTPIGEDTFVRSPGGYAANVEAFTTLVPE 243

Query: 242 IISLN 246
            I + 
Sbjct: 244 SIPIE 248



 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 5/181 (2%)

Query: 258 ATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +  + +  D  P+      + RG E+GH+F  G KY+  +       +GK   V MG
Sbjct: 405 GVVEAADVRDGDPAPDGSGPITAGRGTEIGHVFELGRKYAEALGLKVLDENGKLVTVTMG 464

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R +A V E++ DG+G++WP S++PF + ++     D++   A E++   L   
Sbjct: 465 SYGIGITRNLALVAEATQDGRGLLWPASISPFDVHVVMTGKGDEIAS-ASEELVDALDAA 523

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G DV +DD      G +F  A+L+G P  VIVG +   D   E+  R T  R  ++L +V
Sbjct: 524 GLDVLFDDRPKVSPGVKFGDAELIGVPTIVIVG-RGAVDGMAELWDRRTNERTPVALADV 582

Query: 435 I 435
           +
Sbjct: 583 V 583


>gi|116327681|ref|YP_797401.1| prolyl-tRNA synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|122284523|sp|Q053M7|SYP_LEPBL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116120425|gb|ABJ78468.1| Prolyl-tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 576

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 158/239 (66%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SKY LP  +ENP DA +ASH+LM+R G+  + S G+Y +LPLG K L  +  IIREE
Sbjct: 1   MKASKYILPTEKENPSDAVVASHRLMIRAGLARKSSAGLYFYLPLGLKILQKIKQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+TGA+E  +P L  +D W +SGR+ + GKEM R+ DR+D +   GPTHEE  + + + 
Sbjct: 61  MNKTGALEFDLPILTPSDFWEQSGRWTAMGKEMFRIKDRHDLSYALGPTHEESFSFLLKP 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPRFGV+RSREF+MKDAYSF +       +Y  M  +
Sbjct: 121 LLKSYKDLPLNVYQIQTKFRDEIRPRFGVIRSREFIMKDAYSFHIDDVSLDETYQSMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y +IF R GLK+IP++A+SG +GG  S EF+V++  GE  +        +   SE T  
Sbjct: 181 YRKIFDRCGLKTIPVQADSGSMGGSASEEFMVVSPIGEETLLLCNSC-GYSSNSEKTPL 238



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/261 (27%), Positives = 115/261 (44%), Gaps = 11/261 (4%)

Query: 198 ESGPIGGDLSHE------FIVLADTGETQVFCSKDFMDFPIP-SENTDFDDIISLNSIVE 250
           +S P+      E      FI      +         +    P    ++ +D  +   ++E
Sbjct: 313 DSEPMTDAEIRELGLVPGFIAPVAPNDKVKVLYDRSLQKDFPYVVASNKEDFHTQGFVLE 372

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  +     +DV   +  D  P       + +GIEVGHIF  G KY+          +GK
Sbjct: 373 KEVSGLPEFADVALAREGDLCPNCNAPLKAEKGIEVGHIFKLGEKYTKAFGIQVLDQNGK 432

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              + MG YGIG  R +A VIE  +D KGI WP S+APF+++L++I    +      E+ 
Sbjct: 433 ARTLTMGCYGIGVNRTMATVIEQRNDEKGIFWPISIAPFEVTLVSITKG-EEQYSKAEEF 491

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L     +VFWDD     G +   ++L+GFP++V +G KF  + ++ I +R     E 
Sbjct: 492 YNVLKNENLEVFWDDRDVGPGFKLKDSELIGFPIRVTIGKKFFENGEISIYNRKADKEES 551

Query: 429 MSLEEVINYASHRFSNNRPVL 449
                  N  + R  + R  L
Sbjct: 552 FVFAGFENLIA-RVESLRQEL 571


>gi|24215989|ref|NP_713470.1| prolyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
 gi|81846319|sp|Q8F148|SYP_LEPIN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|24197213|gb|AAN50488.1|AE011490_3 prolyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 576

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 159/239 (66%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SKY LP  +ENP DA +ASH+LM+R G++ + S G+Y +LPLG K L  +  I+REE
Sbjct: 1   MKASKYILPTEKENPADAVVASHRLMIRAGLVRKSSAGLYFYLPLGLKVLKKIEQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N TGA+E  +P L  +D W +SGR+ + GKEM R+ DR+D +   GPTHEE  + + + 
Sbjct: 61  MNSTGALEFDLPILTPSDFWEQSGRWSAMGKEMFRIQDRHDLSYALGPTHEESFSFLLKP 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPRFGV+RSREF+MKDAYSF +       +Y  M V+
Sbjct: 121 LLKSYKDLPVNVYQIQTKFRDEIRPRFGVIRSREFIMKDAYSFHIDDSSLDDTYQAMRVA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y +IF R GLK+IP++A+SG +GG  S EF+V++  GE  +        +   SE T  
Sbjct: 181 YRKIFDRCGLKTIPVQADSGSMGGSASEEFMVVSPIGEETLLLCNSC-GYSSNSEKTPL 238



 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 113/256 (44%), Gaps = 13/256 (5%)

Query: 197 AESGPIGGDLSHE------FIVLADTGETQVFCSKDFMDFPIP-SENTDFDDIISLNSIV 249
           A+S P+      E      FI      +         +    P    +  +D  +   I+
Sbjct: 312 ADSEPMTDLEIRELGLIPGFISPIAPNDKIKVLYDRSLQKDFPYVVGSSKEDFHTQGFIL 371

Query: 250 EQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           E+  +     +DV   +  D  P       + +GIEVGHIF  G KY+          +G
Sbjct: 372 EKEISGLPEFADVALAREGDLCPNCSFPLKAEKGIEVGHIFKLGDKYTKAFGIQVLDQNG 431

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K   + MG YGIG  R +A VIE  +D KGI WP S+APF++SL++I   +       E+
Sbjct: 432 KSKTLTMGCYGIGVNRTMATVIEQCNDEKGIFWPISIAPFEVSLVSIVKGEDQYFKI-EE 490

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            Y  L   G +VFWDD     G +   ++L+GFP+++ +G KF    ++ I +R     +
Sbjct: 491 FYNVLMNEGIEVFWDDRDLGPGFKLKDSELIGFPIRITIGKKFFESGEISIYNRKKDQED 550

Query: 428 DM---SLEEVINYASH 440
                  ++++     
Sbjct: 551 SFVFSGFDDLVARVES 566


>gi|187932904|ref|YP_001884583.1| threonyl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|238691610|sp|B2TIT5|SYT_CLOBB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187721057|gb|ACD22278.1| threonine--tRNA ligase [Clostridium botulinum B str. Eklund 17B]
          Length = 643

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 152/445 (34%), Gaps = 35/445 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L T       +G+   +P G K +  +   + +E+ R 
Sbjct: 228 EYLDAVEEAKKRDHNKLGRELKLFTT-DENVGQGLPLLMPKGAKIVQTLQRWVEDEEERR 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA--MIYGPTHEEVMTDIFRSHI 122
           G +    P +  +DL+  SG +D Y   M  L D           P        I+ +  
Sbjct: 287 GYVLTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDEEVFALRPMTCPFQYTIYNAEQ 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  + +    FR+E      G++R R+F         +TPE  +  +  +    
Sbjct: 347 HSYRDLPIRYGETSTLFRNESSGEMHGLIRVRQFT-LADGHLIVTPEQLEEEFKGVLELI 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +   LG            I  D+S+ F         +     +  +    +  T  D 
Sbjct: 406 QYLMKTLG------------IDEDISYRFSKWDPNNTEKYINDPEAWNKTQDTMRTILDH 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       +   A Y    D+    +     +   +    I+           +     +
Sbjct: 454 LKINYVEADDEAAFYGPKLDLQCRNVH---GKEDTLFTVQIDFAL--------AERFDMS 502

Query: 302 FKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +G+     +     IG      A++    +     +P  ++P ++ ++ I      
Sbjct: 503 YIDKNGEKKRPYIIHRSSIGCYERTLAMLI---EKYAGAFPTWLSPVQVKVLPISDK--- 556

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  E +   L   G  +  D   E+IG +   A L   P  ++VG K  ++++V ++ 
Sbjct: 557 YNDYAESVVKSLRNKGVRIEADYRAEKIGYKIREARLERTPYILVVGEKEAANNEVSVRS 616

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       + L+       +  +  
Sbjct: 617 RKNDDEGAIKLDAFTERLLNEIATK 641


>gi|86151198|ref|ZP_01069413.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841545|gb|EAQ58792.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 602

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 149/444 (33%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L T    +   G+  WL  G +    +  ++ +   
Sbjct: 194 LKEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHR 252

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S +
Sbjct: 253 LRGYEPVRGPELLKADAWKISGHYANYKENM-YFTQIDEQEYGIKPMNCVGHIKIYQSDV 311

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++    
Sbjct: 312 RSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFV 370

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +                               T   +     +  +    +     D+
Sbjct: 371 DNLMKLFDFSYEMEI------------------STKPEKAIGDDEIWEIATKALKEALDE 412

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D+L    +     ++    F   +         
Sbjct: 413 QGLKYGIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPS----CFKLE 461

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +D +      +    +G+      ++            +       + + I    + 
Sbjct: 462 YTDSDNEKKQPVMLHRAILGSFERFIGILTEHC------AGEFPFFIAPTAVGIVPIGEA 515

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V ++ 
Sbjct: 516 HIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALRD 575

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    ++++SL+E I     + S 
Sbjct: 576 RRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|326382111|ref|ZP_08203803.1| threonyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198841|gb|EGD56023.1| threonyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
          Length = 700

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 70/454 (15%), Positives = 141/454 (31%), Gaps = 47/454 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  + P G      +    RE+    G
Sbjct: 261 YLDRLAEAEKRDHRRLGAELDLFS-FPDELGSGLPVFHPKGGIIRKEMEDYSREQHAAGG 319

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              ++ P L  + L+  SG  D Y   M                 +  +     P +  +
Sbjct: 320 YEFVNTPHLTKSTLFEVSGHLDWYADGMFPPMHLDAEYNEDGTLRKPGQDYYVKPMNCPM 379

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +  + 
Sbjct: 380 HNLIFGSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRARGFTQDDAHIYCTQEQVVEE 439

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                    L++    GL    +   +                    +   S +  D   
Sbjct: 440 L-TTTLNFVLQLLKDYGLDDFYLELST----------------KDPAKYVGSDEVWDEAT 482

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +     +          +  A Y       + ++ D+L    ++S   ++    F    
Sbjct: 483 ETLRQVGESSGLELVPDPEGAAFYGPKI---SVQVKDALGRTWQMSTIQLD----FNLPE 535

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           ++ L  +AT      K   V +     G++     V+   + G   +W   V    I + 
Sbjct: 536 RFQLEYTAT---DGTKKRPVMIHRALFGSIERFFGVLTEHYAGAFPVWLSPVQVVGIPVA 592

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                 +   D  + + +RL         D   +++  +         P  ++ G + V 
Sbjct: 593 ------EAFADHLQNVVSRLKGRRVRAEVDFSDDRMQKKIRNHTTAKVPFMLLAGERDVQ 646

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            + V  + R       + ++E I        + R
Sbjct: 647 ANAVSFRFRDGTQLNGVPVDEAIVAIDEWEESRR 680


>gi|148239112|ref|YP_001224499.1| threonyl-tRNA synthetase [Synechococcus sp. WH 7803]
 gi|166225511|sp|A5GJT7|SYT_SYNPW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|147847651|emb|CAK23202.1| Threonyl-tRNA synthetase [Synechococcus sp. WH 7803]
          Length = 610

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 136/426 (31%), Gaps = 36/426 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD       L L + +  +   G+  W P G +    +    R+     G   + 
Sbjct: 203 EEALRRDHRRIGKDLDLFS-IEDEAGAGLVFWHPRGARMRLLIEEFWRQAHFEGGYELLY 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW  SG  D Y + M    + +++     P +       + S ++SYR LP 
Sbjct: 262 TPHVADISLWKTSGHLDFYAESMFGPMEVDEREYQLKPMNCPFHVLTYASKLRSYRELPI 321

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + ++   +R E      G+MR R F   DA+ F L  + S     K+     RI     
Sbjct: 322 RWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCLPEQISDE-ILKILDLTERILSTFD 380

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P                           D          +       I 
Sbjct: 381 FNTYEINLSTRPEKS-----------------IGDDAVWDLATKGLIEALERKGWAYKID 423

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E   A Y    D+   K+ D++    + S   ++    F    ++ L   A       + 
Sbjct: 424 EGGGAFYGPKIDL---KIEDAIGRMWQCSTIQLD----FNLPERFKLDYIAA--DGSKQR 474

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             +   +      R    + E+      +                       +   E + 
Sbjct: 475 PIMIHRAIFGSLERFFGIMTENYAGDYPLWLAPEQVRLLPVT-------DEVQPYAESLL 527

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L++ G     D  G+++G      + +  P+  ++G+K    + V ++ R  G    +
Sbjct: 528 DQLTQAGVRATIDRSGDRLGKLIRTGEQMKIPVLAVIGAKEAEQNAVSLRSRRDGDLGVV 587

Query: 430 SLEEVI 435
           ++ +++
Sbjct: 588 AVADLL 593


>gi|164686598|ref|ZP_02210626.1| hypothetical protein CLOBAR_00190 [Clostridium bartlettii DSM
           16795]
 gi|164604327|gb|EDQ97792.1| hypothetical protein CLOBAR_00190 [Clostridium bartlettii DSM
           16795]
          Length = 566

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 118/260 (45%), Positives = 153/260 (58%), Gaps = 1/260 (0%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
             +P L+E P DAEI SH+LMLR GMI + + GIY+ LP+G +    V  IIREE N  G
Sbjct: 1   MLMPTLKEVPSDAEITSHQLMLRAGMIRKMASGIYNQLPMGIRVFRKVEDIIREEMNAKG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A E+S   L  A+LW ESGR+D  G EM RL DRN +    GPTHEE  T I R+ I SY
Sbjct: 61  AQEISCALLVPAELWQESGRWDVMGPEMFRLKDRNGRDYCLGPTHEETFTHIVRNEITSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + LP   YQI+ KFRDE RPRFGVMR+R F MKDAYSFD   EG   SY+ MF +Y RIF
Sbjct: 121 KQLPLNLYQIETKFRDERRPRFGVMRTRNFTMKDAYSFDADQEGLDKSYDDMFDAYTRIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
            R  L + P++A+SG +GG  S EF+V ++ GE ++       D+    E     +  + 
Sbjct: 181 ARCELDNSPVQADSGAMGGSASAEFMVKSEVGEDEIVFCSGC-DYAANIEKATSVNHEAS 239

Query: 246 NSIVEQWTAPYAATSDVHNE 265
              +++ +           E
Sbjct: 240 TEEMKEMSEIETPNVHTIEE 259



 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/193 (39%), Positives = 107/193 (55%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 D  N +  D  P+  +     RG+EVGHIF  GTKYS  M ATF   +GK   +
Sbjct: 370 FEGQVGDFRNVQEGDKCPKCGQPLEIMRGVEVGHIFKLGTKYSESMGATFLDQNGKSQPI 429

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R VAAVIE  HD  GIIWP ++AP+ + ++ +    +   +  EKIY  L
Sbjct: 430 IMGCYGIGVERTVAAVIEQHHDENGIIWPLAIAPYHVVVVPVNVKKEEHLENAEKIYKEL 489

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G +V  DD  E+ G +F  +DLLG P+++ VG K + D KVE K R    +E +S++
Sbjct: 490 EAAGVEVLLDDRNERAGFKFKDSDLLGIPMRITVG-KDIVDGKVEFKLRKEADKEIISVD 548

Query: 433 EVINYASHRFSNN 445
           EV++     F+ N
Sbjct: 549 EVLDRVKAEFAKN 561


>gi|148675292|gb|EDL07239.1| threonyl-tRNA synthetase-like 2, isoform CRA_b [Mus musculus]
          Length = 559

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/448 (17%), Positives = 154/448 (34%), Gaps = 42/448 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 142 KMMKDWEKFQEEAKSRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNALMDFIREE 199

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y   M    D         P +      +F  
Sbjct: 200 YHKRNFTEVLSPNMYNSKLWETSGHWQHYSNNMFTF-DVEKDTFALKPMNCPGHCLMFAH 258

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F +  +  +        
Sbjct: 259 RPRSWREMPVRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCMVEQ-IEEEIKGCLH 317

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 318 FLQSVYSTFGFSFQLN-LSTRPEHFLGEIE-----------------IWDEAERQLQNSL 359

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      I     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 360 VEFGKPWKINPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 412

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K+  V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 413 SK--DGDDKNRPVIIHRAILGSVERMIAILS---ENYGGKWPLWLSPRQVMVIPVGP--- 464

Query: 360 VCRDACEKIYARLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            C +   ++     + G   DV  DD    +  +   A L  +   ++VG K   ++ V 
Sbjct: 465 ACENYALQVSKECFEEGFMADVDLDDS-CTLNKKIRNAQLAQYNFILVVGEKEKINNAVN 523

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R   I  ++S+  VI    +   + 
Sbjct: 524 VRTRDNKIHGEISIASVIEKLKNLKKSR 551


>gi|290989139|ref|XP_002677200.1| threonyl-tRNA synthetase [Naegleria gruberi]
 gi|284090806|gb|EFC44456.1| threonyl-tRNA synthetase [Naegleria gruberi]
          Length = 672

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 148/437 (33%), Gaps = 42/437 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  +    + +   RD  I      L     H ++ G+  +LP GQ+  +++ +++R E
Sbjct: 265 MKEWQTL--MEEAKKRDHRIIGKDQEL--WFFHPYAPGMVFFLPHGQRLFNSIQSLMRNE 320

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P +  +DLW  SG +D Y + M  + + +       P +      +F+ 
Sbjct: 321 YWHRGYSEVQTPNVFHSDLWKTSGHWDKYAENMF-VLEIDKAQHSLKPMNCPSHCLMFKH 379

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP  F    +  R+EL+    G+ R R+F   DA+ F    +          +
Sbjct: 380 RTRSYRELPIRFADFGVLHRNELKGALTGMTRLRKFQQDDAHIFCRPDQIKSE-----IM 434

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             LR+   +                     F +   T   +        D          
Sbjct: 435 GALRMMQDIYKIFGFG--------------FRLFLSTRPEKYLGEISQWDEAEGQLEAAL 480

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++        E   A Y    D+    + D+L    + +   ++    F    ++ L  +
Sbjct: 481 NEFGHSWQKNEGDGAFYGPKIDIL---ISDALKREHQCATVQLD----FQLPIRFDLTYA 533

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A           +   +      R +A   E              A              
Sbjct: 534 AE--DKTESRPVIVHRAIFGSLERFLAIATEHFGGKWPFWLSPRQAIVVPV-------SN 584

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            C +  EK+  RL +    V  D    +I  +   A L  +   ++VG K +    V I+
Sbjct: 585 KCNEYAEKVQKRLHEAKYYVDVDLSSNRIDKKIRNAQLSQYNYILVVGPKEMESDSVNIR 644

Query: 420 HRLT-GIREDMSLEEVI 435
            R +   +   ++EE++
Sbjct: 645 IRDSDKEQGVKTIEELL 661


>gi|149057086|gb|EDM08409.1| threonyl-tRNA synthetase-like 2, isoform CRA_b [Rattus norvegicus]
          Length = 708

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 150/438 (34%), Gaps = 41/438 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H  S G   +LP G    + +   IREE ++    E+ 
Sbjct: 301 EEARSRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLMDFIREEYHKRNFTEVL 358

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + ++ LW  SG +  Y   M    D         P +      +F    +S+R +P 
Sbjct: 359 SPNMYNSKLWETSGHWQHYSNNMFTF-DIEKDTFALKPMNCPGHCLMFAHRPRSWREMPV 417

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F    +  R+EL     G+ R R F   DA+ F +  +  +            ++   G
Sbjct: 418 RFADFGVLHRNELSGTLTGLTRVRRFQQDDAHIFCMVEQ-IEEEIKGCLHFLQSVYSTFG 476

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F +   T         +  D                  I 
Sbjct: 477 FS------------------FQLNLSTRPEHFLGETEIWDEAERQLQNSLTGFGKPWKIN 518

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+   K+ D++    + +   ++    F    +++L   +     D K+
Sbjct: 519 PGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYVSK--DGDDKN 569

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +  G  WP  ++P ++ +I +      C +   ++ 
Sbjct: 570 RPVIIHRAILGSVERMIAILS---ENYGGKWPLWLSPRQVMIIPVGP---ACENYALQVS 623

Query: 370 ARLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
               + G   DV  DD    +  +   A L  +   ++VG K   ++ V ++ R   I  
Sbjct: 624 KECFEEGFMADVDLDDS-CTLNKKIRNAQLAQYNFILVVGEKEKLNNSVNVRTRDNKIHG 682

Query: 428 DMSLEEVINYASHRFSNN 445
           ++S+  VI    +   + 
Sbjct: 683 EISITSVIEKLKNLKKSR 700


>gi|111219789|ref|YP_710583.1| threonyl-tRNA synthetase [Frankia alni ACN14a]
 gi|111147321|emb|CAJ58970.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) [Frankia alni
           ACN14a]
          Length = 682

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 137/445 (30%), Gaps = 35/445 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD       L L      +  KG+  WLP G    D +    R+ + 
Sbjct: 248 LKEYLTALAEAAKRDHRRIGEDLDLFA-FSPEIGKGLPLWLPNGTIIRDELEGWARQTER 306

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G   +  P +   DL+  SG    Y +++        +     P +      ++++  
Sbjct: 307 RLGYRRVVTPHITQEDLYFLSGHLPYYAEDLYAPIQIEGENYYLKPMNCPHHHMVYKARP 366

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR LP+   +    +R E   +  G+MR+R F   DA+ +    +  +     M +  
Sbjct: 367 KSYRELPYKIAEYGTVYRFERSGQLHGLMRARGFTQNDAHIYCTREQAKEQFLEVMRMHD 426

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                        + A   P      H+   + +  E                     D+
Sbjct: 427 EYYRALGITDFYMVLALRDPANTTKYHDDAQMWEDAERIT--------------REAMDE 472

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y    D     +     +    S   +++     F           
Sbjct: 473 SGIPYVEELGGAAHYGPKVDFIIRSVT---GKEFAASTNQVDLYTPQRFD--------LK 521

Query: 302 FKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  ADG D   V +    +G+     A +     G   +W        I ++        
Sbjct: 522 YHDADGTDKQVVVIHRAPLGSHERFVAFLTEHFGGAFPVWLAPEQVRVIPIMP------E 575

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  E +   L      V  D    ++ ++   A     PL V+VG + V +  V ++ 
Sbjct: 576 LDEYAETVSQALLDADVRVDVDASDGRLPARVRTAVTRKIPLIVVVGRREVEEGSVSVRD 635

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R +G    M L + +          
Sbjct: 636 R-SGQETSMPLADFVRRVRELIDTR 659


>gi|149057085|gb|EDM08408.1| threonyl-tRNA synthetase-like 2, isoform CRA_a [Rattus norvegicus]
          Length = 790

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 150/438 (34%), Gaps = 41/438 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H  S G   +LP G    + +   IREE ++    E+ 
Sbjct: 383 EEARSRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLMDFIREEYHKRNFTEVL 440

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + ++ LW  SG +  Y   M    D         P +      +F    +S+R +P 
Sbjct: 441 SPNMYNSKLWETSGHWQHYSNNMFTF-DIEKDTFALKPMNCPGHCLMFAHRPRSWREMPV 499

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F    +  R+EL     G+ R R F   DA+ F +  +  +            ++   G
Sbjct: 500 RFADFGVLHRNELSGTLTGLTRVRRFQQDDAHIFCMVEQ-IEEEIKGCLHFLQSVYSTFG 558

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F +   T         +  D                  I 
Sbjct: 559 FS------------------FQLNLSTRPEHFLGETEIWDEAERQLQNSLTGFGKPWKIN 600

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+   K+ D++    + +   ++    F    +++L   +     D K+
Sbjct: 601 PGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYVSK--DGDDKN 651

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +  G  WP  ++P ++ +I +      C +   ++ 
Sbjct: 652 RPVIIHRAILGSVERMIAILS---ENYGGKWPLWLSPRQVMIIPVGP---ACENYALQVS 705

Query: 370 ARLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
               + G   DV  DD    +  +   A L  +   ++VG K   ++ V ++ R   I  
Sbjct: 706 KECFEEGFMADVDLDDS-CTLNKKIRNAQLAQYNFILVVGEKEKLNNSVNVRTRDNKIHG 764

Query: 428 DMSLEEVINYASHRFSNN 445
           ++S+  VI    +   + 
Sbjct: 765 EISITSVIEKLKNLKKSR 782


>gi|49483426|ref|YP_040650.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425317|ref|ZP_05601742.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427978|ref|ZP_05604376.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430611|ref|ZP_05606993.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433371|ref|ZP_05609729.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436213|ref|ZP_05612260.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|282905581|ref|ZP_06313436.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908556|ref|ZP_06316386.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910835|ref|ZP_06318638.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914040|ref|ZP_06321827.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282918962|ref|ZP_06326697.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282924085|ref|ZP_06331761.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|283958006|ref|ZP_06375457.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293501072|ref|ZP_06666923.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510034|ref|ZP_06668742.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|293526620|ref|ZP_06671305.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|295427750|ref|ZP_06820382.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297591292|ref|ZP_06949930.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|81175023|sp|Q6GHH2|SYP_STAAR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|49241555|emb|CAG40241.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271774|gb|EEV03912.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274819|gb|EEV06306.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278739|gb|EEV09358.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281464|gb|EEV11601.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410]
 gi|257284495|gb|EEV14615.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|282314057|gb|EFB44449.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282316772|gb|EFB47146.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282322108|gb|EFB52432.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282325440|gb|EFB55749.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327618|gb|EFB57901.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330873|gb|EFB60387.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|283790155|gb|EFC28972.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920692|gb|EFD97755.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|291096077|gb|EFE26338.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466978|gb|EFF09496.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|295128108|gb|EFG57742.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297576178|gb|EFH94894.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|312438357|gb|ADQ77428.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus TCH60]
 gi|315194151|gb|EFU24544.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 567

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 115/282 (40%), Positives = 173/282 (61%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK   D+    E  +  
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSK-ESDYAANIEKAEVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              +      Q        +    ++L D L        + +
Sbjct: 240 YEPNHKHTTVQPIEKIETPNVKTAQELADFLGRPVDEIVKTM 281



 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 110/188 (58%), Gaps = 4/188 (2%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D       + L +   V+    GIEVG +F  GTKYS  M+ATF    GK   + MG YG
Sbjct: 382 DFRFILEGEKLSDGSGVAHFAEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R ++A++E +HD  GI+WP SV PF + LI+I       R+  + +YA  +    D
Sbjct: 442 IGISRTLSAIVEQNHDDNGIVWPKSVTPFDLHLISINPKKDDQRELADALYAEFNTK-FD 500

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V +DD  E+ G +F  ADL+G PL+++VG +  S+  VE+K RLTG  E++ +++++   
Sbjct: 501 VLYDDRQERAGVKFNDADLIGLPLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVI 559

Query: 439 SHRFSNNR 446
           ++++ N +
Sbjct: 560 TNKYDNLK 567


>gi|330834508|ref|YP_004409236.1| threonyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
 gi|329566647|gb|AEB94752.1| threonyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
          Length = 562

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 169/442 (38%), Gaps = 37/442 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + + +  D  I   ++ L +    +   G+  + P GQ   + + + +RE  +  G
Sbjct: 145 YLQWLEKASETDHRIIGERMDLFSFH-DETGPGLVLFHPKGQLIRNEMISYMREINSSMG 203

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+    +    LW  SG YD+Y  +ML   +++D  +   P +      I++S ++SY
Sbjct: 204 YQEVYTSHVFRTVLWKISGHYDTYRDKMLIF-NKDDDELGIKPMNCPAHILIYKSRVRSY 262

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +    +R E +   +G++R+R F   D + F    +        +    L +
Sbjct: 263 RDLPLRFSEFGNVYRWEKKGELYGLLRTRGFTQDDGHIFLREDQIRDE-VKTLINKTLEV 321

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            ++ G +   +R                   T   +   S +  +    S      ++ +
Sbjct: 322 LNKFGFRGDDVRINL---------------STRPDESIGSDEQWEKATNSLLNVLKELGT 366

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E+  A Y    D     + DSL    ++S   ++    F    ++       +  
Sbjct: 367 QFIIKEKEGAFYGPKIDFD---IRDSLNRWWQLSTIQVD----FNLPERF----KLEYVD 415

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +     G++  + A++     G+   W   ++P ++ ++ I    +  ++
Sbjct: 416 EDGSKKRPVMIHRAIYGSLDRMIAILLEHFRGRLPAW---LSPVQVRILPI---SEENQE 469

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              KI   L + G     D  GE +  +   A   G P  VIVG K   + KV I+ R  
Sbjct: 470 YANKILVMLRENGIRGELDPSGETLSKRIKRAYDEGVPYLVIVGRKEALEEKVTIRSRGN 529

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              + + L++ I   +    N 
Sbjct: 530 VEVKGVPLKDFIEKINLEVRNR 551


>gi|194467742|ref|ZP_03073728.1| prolyl-tRNA synthetase [Lactobacillus reuteri 100-23]
 gi|194452595|gb|EDX41493.1| prolyl-tRNA synthetase [Lactobacillus reuteri 100-23]
          Length = 577

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 115/271 (42%), Positives = 160/271 (59%), Gaps = 6/271 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +E P DAE  SHK+M+R G I+Q S G++S+LPL  + +  V  IIR+E
Sbjct: 1   MKQSKVLIPTKKEVPSDAEALSHKMMIRAGYIYQVSAGVWSYLPLAYRVIRKVENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM +P L  ADLW ESGRY+SYG  + +L DR D+  I GPTHEE  T++ R 
Sbjct: 61  MDKAGAVEMLMPGLLPADLWKESGRYESYGDNLFKLKDRRDRDFILGPTHEETFTEVLRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE RPR+G++R +EF M D YSF    EG   +YN    +
Sbjct: 121 SIKSYKKLPLVVYQLQDKFRDEDRPRYGILRGKEFEMLDGYSFSADQEGLDEAYNNQAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    + A+SG +GG  S EF   A+ GE  +  +    D+    E  +  
Sbjct: 181 YRNIFDRIGLNYKVILADSGTMGGKNSQEFSAPAEVGEDIIAYTDG--DYAANIEKAESK 238

Query: 241 DII----SLNSIVEQWTAPYAATSDVHNEKL 267
            +     +  + +E+   P A T D   E L
Sbjct: 239 FVGVQQTAAPAPIEKKATPGAHTVDEAAESL 269



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 106/190 (55%), Gaps = 5/190 (2%)

Query: 261 DVHNEKLFDSLPENK-RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           D  N K  +  P+ K      GIE+GHIF  GT YS  + A    ++G+   V MGSYGI
Sbjct: 387 DFRNVKEGEIAPDGKPLKFTPGIEIGHIFKLGTHYSSKLGAQVLDSNGRLTDVIMGSYGI 446

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R+++AV E + D  G++WPDS+APF + +I + A  +      +KI  +L++ G +V
Sbjct: 447 GVTRLLSAVAEQNADENGLVWPDSIAPFDVHVIPVNAKKEDQMAMADKIDQQLTEAGYEV 506

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---IN 436
             DD  E+ G +FA +DL+G P++V VG K   D  VEIK R TG   ++  EE+   + 
Sbjct: 507 LVDDRKERAGVKFADSDLIGIPIRVTVGKK-AQDGIVEIKIRKTGETVEVKQEELVNTVE 565

Query: 437 YASHRFSNNR 446
               + +  +
Sbjct: 566 ILLKQLNEEK 575


>gi|254373305|ref|ZP_04988793.1| prolyl-tRNA synthetase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151571031|gb|EDN36685.1| prolyl-tRNA synthetase [Francisella novicida GA99-3549]
          Length = 565

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 113/333 (33%), Positives = 187/333 (56%), Gaps = 6/333 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGVKVLQKIQNIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E     
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDYAANIELATYA 239

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             D    ++  + +E+   P   T +   +++   + +  +        G+ F    +  
Sbjct: 240 KPDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIKDAEGNFFALVIRGD 299

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             ++ T      +       +       +  A 
Sbjct: 300 HELNETKINKLEQIVAPYTLATKEEIFSIFNAN 332



 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 69/183 (37%), Positives = 104/183 (56%), Gaps = 3/183 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVG 376
           G G  RV+AA IE SHD  GIIWP+S+AP++++++ I        ++  +K+Y  L   G
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKVKEVADKLYQDLLGDG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I 
Sbjct: 503 IDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITIAELIK 562

Query: 437 YAS 439
             +
Sbjct: 563 ILT 565


>gi|283955645|ref|ZP_06373138.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792870|gb|EFC31646.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 602

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 151/444 (34%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L T    +   G+  WL  G +    +  ++ +   
Sbjct: 194 LKEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHR 252

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S +
Sbjct: 253 LRGYEPVRGPELLKADAWKISGHYANYKENM-YFTQIDEQEYGIKPMNCVGHIKIYQSDV 311

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++    
Sbjct: 312 RSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFV 370

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +                               T   +     +  +    +     D+
Sbjct: 371 DNLMKLFDFSYEMEI------------------STKPEKAIGDDEIWEIATKALKEALDE 412

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D+L    +     ++    F   +++       
Sbjct: 413 QGLKYGIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPSRF----KLE 461

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +D +      +    +G+      ++            +       + + I    + 
Sbjct: 462 YTDSDNEKKQPVMLHRAILGSFERFIGILTEHC------AGEFPFFIAPTAVGIVPIGEA 515

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V ++ 
Sbjct: 516 HIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALRD 575

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    ++++SL+E I     + S 
Sbjct: 576 RRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|152993995|ref|YP_001359716.1| threonyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
 gi|166225510|sp|A6QD00|SYT_SULNB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|151425856|dbj|BAF73359.1| threonyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
          Length = 604

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 159/444 (35%), Gaps = 39/444 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +++E   RD      ++ L      +   G+  W+P G K    +  I+ +    
Sbjct: 197 KSYLKMMEEAKKRDHRKIGTEMELFM-FNEESGAGLPFWMPQGAKLRYKLEQILHKAHLV 255

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                +  P +  AD+W  SG Y  YG+ M  L + + +     P +      IF+   K
Sbjct: 256 RDYEPVRGPEILKADMWRTSGHYACYGENM-YLTEIDGQEYGIKPMNCIGHIQIFKQTQK 314

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  +Y+  +  R E      G++R REF   DA+ F    + +      +     
Sbjct: 315 SYRDLPVKYYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCAPEQIASEVLEVVEFV-- 372

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                              +      E+ +   T   +     +  +             
Sbjct: 373 -----------------DSVMKLFEFEYTMEISTKPEKAIGDDEVWETATQGLKDALKGN 415

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +I E   A Y    D+   K+ D++    +     ++    F    ++ +   A  
Sbjct: 416 DLPYTIDEGGGAFYGPKIDI---KITDAIGRKWQCGTIQVD----FNLPERFDVEYVAE- 467

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              + +   V +    +G+      ++   + G+   +   +AP ++  + I    +   
Sbjct: 468 --DNSRKRPVMLHRAILGSFERFIGILTEHYAGEFPFF---IAPTQVIFVPI---SEGHA 519

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                +  +L   G D    D  + +  +   A+    P  VI+G + V ++ V I++R 
Sbjct: 520 GYAYGLKKKLMLEGIDSEVSDKNDSLNKRIRTAEKQRVPYVVIIGDEEVQNNTVAIRNRR 579

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           T  + +++ +E +   + +    +
Sbjct: 580 TREQYNLTQDEFMVELTKQLQEGK 603


>gi|88597312|ref|ZP_01100547.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561885|ref|YP_002343664.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|73919778|sp|Q9PIS3|SYT_CAMJE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|88190373|gb|EAQ94347.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359591|emb|CAL34375.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284925497|gb|ADC27849.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315928137|gb|EFV07455.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 602

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 151/444 (34%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L T    +   G+  WL  G +    +  ++ +   
Sbjct: 194 LKEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHR 252

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S +
Sbjct: 253 LRGYEPVRGPELLKADAWKISGHYANYKENM-YFTQIDEQEYGIKPMNCVGHIKIYQSDV 311

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++    
Sbjct: 312 RSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFV 370

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +                               T   +     +  +    +     D+
Sbjct: 371 DNLMKLFDFSYEMEI------------------STKPEKAIGDDEIWEIATKALKEALDE 412

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D+L    +     ++    F   +++       
Sbjct: 413 QGLKYGIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPSRF----KLE 461

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +D +      +    +G+      ++            +       + + I    + 
Sbjct: 462 YTDSDNEKKQPVMLHRAILGSFERFIGILTEHC------AGEFPFFIAPTAVGIVPIGEA 515

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V ++ 
Sbjct: 516 HIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALRD 575

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    ++++SL+E I     + S 
Sbjct: 576 RRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|119963884|ref|YP_948047.1| threonyl-tRNA synthetase [Arthrobacter aurescens TC1]
 gi|166223318|sp|A1R735|SYT_ARTAT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119950743|gb|ABM09654.1| threonyl-tRNA synthetase [Arthrobacter aurescens TC1]
          Length = 669

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 65/451 (14%), Positives = 125/451 (27%), Gaps = 49/451 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L +    +   G+  + P G      +    R+     G   
Sbjct: 252 RIAEAERRDHRKLGVELDLFS-FPDELGSGLPVFHPKGGIIRKAMEDYSRQRHVDAGYEF 310

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTD 116
           +  P +    L+  SG  D Y   M                 +  +     P +  +   
Sbjct: 311 VYTPHITKGHLYEVSGHLDWYKDGMFPAMQVDAEFNEDGSVRKPAQDYYLKPMNCPMHNL 370

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP   ++    +R E      G+ R R     DA+ +    +       
Sbjct: 371 IFRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYCTREQMKDEL-T 429

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                 L +    GL    +   +                  E +        +    + 
Sbjct: 430 TTLNFVLGLLKDYGLDDFYLELST----------------KNEEKFVGDDAAWEEATRTL 473

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
           +   +             A Y       + +  D+L    ++S   ++    F    ++ 
Sbjct: 474 SEVAEASGLHLVPDPGGAAFYGPKI---SVQAKDALGRTWQMSTIQLD----FNLPERF- 525

Query: 296 LPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 ++ ADG       +     G++     V+   + G    W   V    I +   
Sbjct: 526 ---ELEYQAADGTRQRPVMIHRALFGSVERFMGVLTEHYAGAFPAWLAPVQVVGIPVA-- 580

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D    +  +L   G     D   ++   +   A     P  +I G +     
Sbjct: 581 ----ETFNDYMFDVVGQLKAAGIRAEVDISSDRFPKKIRTASKDKIPFVLIAGGEDAEAG 636

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V  + R       + + E +        N 
Sbjct: 637 AVSFRFRDGSQDNGVPVAEAVRRIVDAVKNR 667


>gi|256825369|ref|YP_003149329.1| threonyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
 gi|256688762|gb|ACV06564.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Kytococcus
           sedentarius DSM 20547]
          Length = 660

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 66/446 (14%), Positives = 137/446 (30%), Gaps = 31/446 (6%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L +   RD      ++ L +    +   G+  + P G      +   + +    
Sbjct: 244 KAYQERLAEAERRDHRKLGAEMDLYS-FPEEVGPGLPVFHPKGAILRRTMEDYVWKRHVE 302

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   ++ P L    L+  SG    Y   M+   D + +A      +  +   I+RS  +
Sbjct: 303 EGFSYVTTPHLSKEGLFHTSGHLPYYADGMMPELDDDGQAYRIKAMNCPMHNLIYRSQQR 362

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  +++    +R+E      G+ R R     D++S+    +        +    L
Sbjct: 363 SYRELPLRYFEFGTVYRNEKSGVLQGLTRVRMITQDDSHSYVTREQAPGE-VKHLLDFVL 421

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G+    +   +    GD   +FI   +                         + 
Sbjct: 422 SLLRDFGMDDYYLELSTRAEEGDKKDKFIGTDEQ-----------WAEATAVLEQVATET 470

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y       + +  D++    ++S    +      FG +YS       
Sbjct: 471 GLELVPDPGGAAYYGPKI---SVQARDAIGRTWQMSTIQYDFNQPERFGLEYS------- 520

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +   V + S   G++     V+   + G+  +W   V    + +       +  +
Sbjct: 521 AADGTRQQPVMIHSAKFGSIERFIGVLVEHYAGQFPVWLAPVQVLGVPVA------EDFQ 574

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E + A++   G     D   ++   +   A     P  +I G +      V  + R 
Sbjct: 575 PYLEDVLAQMRAQGIRTEIDASDDRFPKKIRNASKSKVPFTLIAGGEDRDAGAVSFRFRD 634

Query: 423 TGIREDMSLEEVINYASHRFSNNRPV 448
                 + + + I            V
Sbjct: 635 GSQENGVPVADAIARIREAIDTRAQV 660


>gi|57237210|ref|YP_178222.1| threonyl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|73919779|sp|Q5HWW3|SYT_CAMJR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57166014|gb|AAW34793.1| threonyl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|315057643|gb|ADT71972.1| Threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni S3]
          Length = 602

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 151/444 (34%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L T    +   G+  WL  G +    +  ++ +   
Sbjct: 194 LKEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHR 252

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S +
Sbjct: 253 LRGYEPVRGPELLKADAWKISGHYANYKENM-YFTQIDEQEYGIKPMNCVGHIKIYQSDV 311

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++    
Sbjct: 312 RSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFV 370

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +                               T   +     +  +    +     D+
Sbjct: 371 DNLMKLFDFSYEMEI------------------STKPEKAIGDDEIWEVATKALKEALDE 412

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D+L    +     ++    F   +++       
Sbjct: 413 QGLKYGIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPSRF----KLE 461

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +D +      +    +G+      ++            +       + + I    + 
Sbjct: 462 YTDSDNEKKQPVMLHRAILGSFERFIGILTEHC------AGEFPFFIAPTAVGIVPIGEA 515

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V ++ 
Sbjct: 516 HIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALRD 575

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    ++++SL+E I     + S 
Sbjct: 576 RRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|120403299|ref|YP_953128.1| prolyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
 gi|152112935|sp|A1T7H2|SYP_MYCVP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119956117|gb|ABM13122.1| prolyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
          Length = 585

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 98/249 (39%), Positives = 140/249 (56%), Gaps = 1/249 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G +     G+YSWLPLG K L  +  I+R E 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYVRPVGPGLYSWLPLGLKVLRKIENIVRNEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR +   + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTEYGDTLFRLQDRRNNDYLLGPTHEEMFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFD+  +G K++Y     +Y
Sbjct: 124 YSSYKDFPLRLYQIQNKYRDEARPRAGILRGREFLMKDSYSFDIDDDGLKNAYIAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFD 240
            RIF  L ++ + + A SG +GG  S EF+  +D GE     C +      + +  T   
Sbjct: 184 QRIFDLLKVRYVIVSAVSGAMGGSASEEFLAESDVGEDTYVRCLQSGYAANVEAVVTMVP 243

Query: 241 DIISLNSIV 249
           + IS   I 
Sbjct: 244 EPISSEQIA 252



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/188 (34%), Positives = 97/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     V+ARGIE+GH+F  G KY+    A   G +GK   + MG
Sbjct: 398 GTIEAAEVREGDPSPDGAGPLVAARGIEIGHVFQLGRKYADAFGADVLGENGKPVRLTMG 457

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA + E  HD  G+ WP +V+PF +  + I   D   R    ++ A L ++
Sbjct: 458 SYGIGVSRLVAVIAEQHHDELGLRWPSTVSPFDVH-VVIANKDADARTGATELAAELDRL 516

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD     G +F  A+LLG P  V+VG +  +D  VE++ R  G + ++ ++   
Sbjct: 517 GVDVLLDDRTASPGVKFKDAELLGVPWIVVVG-RGWADGIVELRDRFGGDKHEIPVDGAA 575

Query: 436 NYASHRFS 443
              S   +
Sbjct: 576 ERISAALA 583


>gi|332184487|gb|AEE26741.1| Prolyl-tRNA synthetase Bacterial type [Francisella cf. novicida
           3523]
          Length = 565

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 112/289 (38%), Positives = 170/289 (58%), Gaps = 4/289 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 1   MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQDIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLRDRHNRDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNIMYTT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E   + 
Sbjct: 181 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDYAANIELATYA 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                  +V Q            N K  D L        +      I  
Sbjct: 240 KPDLSKRVVSQ---NLITKIHTPNIKTIDKLCNQMNFDIKQTIKTMIIK 285



 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/184 (36%), Positives = 102/184 (55%), Gaps = 3/184 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K       GIEVGHIF     YS PM+A     DGK   + MG 
Sbjct: 382 VADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIDQDGKSKPMLMGC 441

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YG G  RV+AA IE SHD  GIIWP+++AP++++++ I        ++  +K+Y  L   
Sbjct: 442 YGFGVSRVMAAAIEQSHDQNGIIWPEAIAPYQVAILPINYNKSDKVKEVADKLYQDLLTN 501

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I
Sbjct: 502 GIDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITVTELI 561

Query: 436 NYAS 439
               
Sbjct: 562 EILK 565


>gi|183601640|ref|ZP_02963010.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683826|ref|YP_002470209.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190862|ref|YP_002968256.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196268|ref|YP_002969823.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|254783508|sp|B8DUF4|SYT_BIFA0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|183219246|gb|EDT89887.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621476|gb|ACL29633.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249254|gb|ACS46194.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250822|gb|ACS47761.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|289178601|gb|ADC85847.1| Threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295793851|gb|ADG33386.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 692

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 59/454 (12%), Positives = 135/454 (29%), Gaps = 49/454 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      ++ L +    +   G+  + P G   ++ +    RE   +     
Sbjct: 247 RMEEAAKRDHRKLGQEMDLFS-FPDEIGPGLAVFHPKGAAIINAMEDYSREMHRKNHYSF 305

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTD 116
           +  P +    L+  SG    Y   M                 +        P +  +   
Sbjct: 306 VQTPHITKGGLYETSGHLQWYKDGMYPPMHLDEEKDENGNIVKQGFDYYLKPMNCPMHNL 365

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +       
Sbjct: 366 IFKSRQRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHIYCTREQMKDEL-K 424

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +    L++    GL    +   +                  E +   S +  +    + 
Sbjct: 425 NLLNFVLKVLKDYGLNDFYLELST----------------KDEHKFVGSDEIWEEATNTL 468

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
               ++            A Y       + +  D++    +VS   ++    F    ++ 
Sbjct: 469 AEVAEESGLELVADPGGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNLPERF- 520

Query: 296 LPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +   DG       +     G++    A++   + G    W   V    + +   
Sbjct: 521 ---QLEYIAPDGSHQRPVMIHRALFGSIERFFAILLEHYAGAFPAWLAPVQALGVPVA-- 575

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      +K    L +    V  D+  ++ G +   A     P  +I G + ++++
Sbjct: 576 ----DEFAPHLDKFMNSLEEDLVRVETDNSDDRFGKKIRNASKSKVPYIIIAGEEDMNNN 631

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            V  + R       + +++   +     +    V
Sbjct: 632 AVSFRFRDGSQLNGVPVDQAKAWILETITKRVQV 665


>gi|158334707|ref|YP_001515879.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|158304948|gb|ABW26565.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 606

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 139/442 (31%), Gaps = 41/442 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + ++
Sbjct: 194 EEALRRDHRKLGKELGLFL-FSDLVGPGLPLWTPKGTLLRSQLEDFLKQEQIQRGYLGVT 252

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  L   ND         +  P +      I++S ++S
Sbjct: 253 TPHIARVDLFKTSGHWQKYQEDMFPLMSENDADRSSEQGFVMKPMNCPFHIQIYKSELRS 312

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    +    +R E     G +        D     +TP+     + K+    L +
Sbjct: 313 YRDLPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPDQLDDEFLKVVDLILSV 372

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F +L LK+   R                  D    +   S +  +    +     + +  
Sbjct: 373 FEKLQLKNFKARLS--------------FRDPDSDKYIGSDEAWEKSQNAIRRAVETLGM 418

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +       A Y    D       D L    ++    ++                  F G
Sbjct: 419 EHFEGIGEAAFYGPKLDFI---FQDVLDREWQLGTVQVDYNLP--------ERFDLEFMG 467

Query: 305 ADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            DG      M          R++  +IE       +                   +    
Sbjct: 468 EDGNRQRPIMIHRAPFGSLERLIGILIEEYAGVFPLWLAPEQVRLLTV-------NDDHM 520

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              + +   L   G  V  D  G+++G +   A+    P+  ++G K V    + I+ R 
Sbjct: 521 PFAQAVATDLQAAGIRVSVDQSGDRLGKKIRNAEKAKIPVMSVIGDKEVEAHSLNIRTRA 580

Query: 423 TGIREDMSLEEVINYASHRFSN 444
           +G    + ++EV        S 
Sbjct: 581 SGELGAIPVDEVKQKLGDAIST 602


>gi|116330596|ref|YP_800314.1| prolyl-tRNA synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122281649|sp|Q04U64|SYP_LEPBJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116124285|gb|ABJ75556.1| Prolyl-tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 576

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 115/239 (48%), Positives = 158/239 (66%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SKY LP  +ENP DA +ASH+LM+R G+  + S G+Y +LPLG K L  +  IIREE
Sbjct: 1   MKASKYILPTEKENPSDAVVASHRLMIRAGLARKSSAGLYFYLPLGLKILQKIKQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+TGA+E  +P L  +D W +SGR+ + GKEM R+ DR+D +   GPTHEE  + + + 
Sbjct: 61  MNKTGALEFDLPILTPSDFWEQSGRWTAMGKEMFRIKDRHDLSYALGPTHEESFSFLLKP 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY++LP   YQIQ KFRDE+RPRFGV+RSREF+MKDAYSF +       +Y  M  +
Sbjct: 121 LLKSYKDLPLNVYQIQTKFRDEIRPRFGVIRSREFIMKDAYSFHIDDVSLDETYQSMRAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y +IF R GLK+IP++A+SG +GG  S EF+V++  GE  +        +   SE T  
Sbjct: 181 YRKIFDRCGLKTIPVQADSGSMGGSASEEFMVVSPIGEETLLLCNSC-GYSSNSEKTPL 238



 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/261 (27%), Positives = 115/261 (44%), Gaps = 11/261 (4%)

Query: 198 ESGPIGGDLSHE------FIVLADTGETQVFCSKDFMDFPIP-SENTDFDDIISLNSIVE 250
           +S P+      E      FI      +         +    P    ++ +D  +   ++E
Sbjct: 313 DSEPMTDAEIRELGLVPGFIAPVAPNDKVKVLYDRSLQKDFPYVVASNKEDFHTQGFVLE 372

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  +     +DV   +  D  P       + +GIEVGHIF  G KY+          +GK
Sbjct: 373 KEVSGLPEFADVALAREGDLCPNCNAPLKAEKGIEVGHIFKLGEKYTKAFGIQVLDQNGK 432

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              + MG YGIG  R +A VIE  +D KGI WP S+APF+++L++I    +      E+ 
Sbjct: 433 ARTLTMGCYGIGVNRTMATVIEQRNDEKGIFWPISIAPFEVTLVSITKG-EEQYSKAEEF 491

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L     +VFWDD     G +   ++L+GFP++V +G KF  + ++ I +R     E 
Sbjct: 492 YNVLKNENLEVFWDDRDVGPGFKLKDSELIGFPIRVTIGKKFFENGEISIYNRKADKEES 551

Query: 429 MSLEEVINYASHRFSNNRPVL 449
                  N  + R  + R  L
Sbjct: 552 FVFAGFENLIA-RVESLRQEL 571


>gi|282903818|ref|ZP_06311706.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282595436|gb|EFC00400.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
          Length = 567

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 118/294 (40%), Positives = 176/294 (59%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK   D+    E  +  
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSK-ESDYAANIEKAEVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
              +      Q        +    ++L D L        +      IF    +Y
Sbjct: 240 YEPNHKHTTVQPIEKIETPNVKTAQELADFLGRPVDEIVKT----MIFKVDDEY 289



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 110/188 (58%), Gaps = 4/188 (2%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D       + L +   V+    GIEVG +F  GTKYS  M+ATF    GK   + MG YG
Sbjct: 382 DFRFILEGEKLSDGSGVAHFAEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R ++A++E +HD  GI+WP SV PF + LI+I       R+  + +YA  +    D
Sbjct: 442 IGISRTLSAIVEQNHDDNGIVWPKSVTPFDLHLISINPKKDDQRELADALYAEFNTK-FD 500

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V +DD  E+ G +F  ADL+G PL+++VG +  S+  VE+K RLTG  E++ +++++   
Sbjct: 501 VLYDDRQERAGVKFNDADLIGLPLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVI 559

Query: 439 SHRFSNNR 446
           ++++ N +
Sbjct: 560 TNKYDNLK 567


>gi|72161176|ref|YP_288833.1| prolyl-tRNA synthetase [Thermobifida fusca YX]
 gi|114152272|sp|Q47RV7|SYP_THEFY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71914908|gb|AAZ54810.1| prolyl-tRNA synthetase, bacterial [Thermobifida fusca YX]
          Length = 582

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 108/239 (45%), Positives = 148/239 (61%), Gaps = 1/239 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G + + + G+YSWLPLG+  L+NV A++REE 
Sbjct: 4   RMSNLFLRTLREDPADAEVPSHKLLVRGGFVRRTAPGVYSWLPLGKIVLENVAAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           NR GA E+ +P L   + +  +GR+  YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 64  NRIGAQEVLLPALLPREYYEATGRWTEYGDTLFRLKDRKGADYLLGPTHEELFTLLVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ KFRDE RPR G++R REF MKD+YSFDL  EG + SY     +Y
Sbjct: 124 YTSYKDYPVILYQIQEKFRDEARPRAGILRGREFHMKDSYSFDLDDEGLQRSYEAHRQAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +RIF RLGL+ + ++A SG +GG  S EF+ +A TGE   F      D+    E     
Sbjct: 184 IRIFDRLGLEYVIVKATSGAMGGSASEEFLAIAPTGE-DTFVRSTGSDYAANVEAVVTP 241



 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 102/189 (53%), Gaps = 6/189 (3%)

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+ K      RGIE+GH+F  G KY+   S    G DGK   + MG
Sbjct: 396 GTIEAAEVRDGDPAPDGKGTLYTARGIEIGHVFQLGRKYTDAFSLDALGPDGKPVRITMG 455

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RVVAA++E SHD +GIIWP  VAP  + ++     DQV  +   +I   L   
Sbjct: 456 SYGIGVSRVVAAIVEQSHDERGIIWPREVAPADVHVVGTGKGDQV--EVALRISQELVDR 513

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V  DD  G   G +F  A+LLG P  +IVG + +++  VE++ R +G R ++S++ V
Sbjct: 514 GVRVLVDDRKGVSPGVKFTDAELLGVPTVLIVG-RGLANGVVELRDRASGDRSEVSVDTV 572

Query: 435 INYASHRFS 443
           ++   +   
Sbjct: 573 VDTIVNLVR 581


>gi|86153772|ref|ZP_01071975.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85842733|gb|EAQ59945.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 602

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 150/444 (33%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L T    +   G+  WL  G +    +  ++ +   
Sbjct: 194 LKEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHR 252

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S +
Sbjct: 253 LRGYEPVRGPELLKADAWKISGHYANYKENM-YFTQIDEQEYGIKPMNCVGHIKIYQSDV 311

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++    
Sbjct: 312 RSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFV 370

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +                               T   +     +  +    +     D 
Sbjct: 371 DNLMKLFDFSYEMEI------------------STKPEKAIGDDEIWEIATKALKEALDK 412

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D+L    +     ++    F   +++       
Sbjct: 413 QGLKYGIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPSRF----KLE 461

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +D +      +    +G+      ++            +       + + I    + 
Sbjct: 462 YTDSDNEKKQPVMLHRAILGSFERFIGILTEHC------AGEFPFFIAPTAVGIVPIGEA 515

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V ++ 
Sbjct: 516 HIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALRD 575

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    ++++SL+E I     + S 
Sbjct: 576 RRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|269795047|ref|YP_003314502.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Sanguibacter
           keddieii DSM 10542]
 gi|269097232|gb|ACZ21668.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Sanguibacter
           keddieii DSM 10542]
          Length = 676

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/450 (15%), Positives = 130/450 (28%), Gaps = 47/450 (10%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R+     G   ++ 
Sbjct: 261 EAERRDHRRLGSELDLFS-FPDEIGSGLAVFHPKGGIIRSEMEQYSRKRHVEEGYSFVNT 319

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDIFR 119
           P +    L++ SG  D Y   M                 +  +     P +  +   IF 
Sbjct: 320 PHITKEQLFLTSGHLDWYADGMYPPMHLDEEVDADGTVRKAGQNYYLKPMNCPMHNLIFA 379

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP   ++    +R E      G+ R R F   DA+ +    +          
Sbjct: 380 SRGRSYRELPLRLFEFGTVYRYEKSGVVHGLARGRGFTQDDAHIYCTREQMKDEL-TTSL 438

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    GL    +   +                        + D  +    +    
Sbjct: 439 NFVLGLLKDYGLDDFYLELSTRDPEKS----------------VGTDDAWEEATRTLEEV 482

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                          A Y       + +  D++    ++S   ++    F    K+ L  
Sbjct: 483 AVASGLDLVPDPGGAAFYGPKI---SVQAKDAIGRTWQMSTIQLD----FNLPEKFDLEF 535

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A       +   V +     G++    AV+   + G    W   V    + +       
Sbjct: 536 AAA---DGTRQRPVMIHRALFGSIERFFAVLTEHYAGAFPAWLAPVQVLAVPVA------ 586

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D    + A+L K G     DD  ++   +   A     P  +I G +      V  
Sbjct: 587 EPFNDYLADVVAQLRKAGVRADLDDSSDRFAKKIRTASTQKIPFVLIAGGEDAEAGAVSF 646

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           ++R       + + E I        +   V
Sbjct: 647 RYRDGRQENGVPVAEAIERVLAAVRDRVQV 676


>gi|297571190|ref|YP_003696964.1| prolyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931537|gb|ADH92345.1| prolyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
          Length = 595

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 98/236 (41%), Positives = 140/236 (59%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+++P DAE+ SHKL++R G + + + GIY+WLPLG K L  V A++REE +
Sbjct: 1   MSELFVRTLRDDPADAEVRSHKLLVRAGYVRRAAPGIYTWLPLGLKVLRKVEAVVREEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G+ EM  P L   + +  + R++ YG  + RL DR +   +  PTHEE+ T   +   
Sbjct: 61  AAGSQEMHFPALLPREPYEATNRWEEYGPNLFRLKDRRENDYLLAPTHEEMFTLAVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP + YQIQ K+RDE RPR G++R+REF+MKDAYSFD+   G  HSY  M  +Y 
Sbjct: 121 SSYKDLPVSLYQIQHKYRDEARPRAGIIRTREFIMKDAYSFDIDDSGLDHSYETMRNAYQ 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           RIF RLG+  +   A+SG +GG  S EF+     GE     S         +  T 
Sbjct: 181 RIFTRLGVPFVICSAQSGAMGGSRSEEFLAPCAIGEDTFVKSAGGYAANTEAVTTP 236



 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 5/192 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+        RGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 406 GTIEAVEVRAGDQAPDGSGPLSIERGIEIGHIFQLGRKYAKALDLKVLDQNGKAVVVTMG 465

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+AA+ E + D KG+ WP  +AP  + +I     D    D   +  A LS+ 
Sbjct: 466 SYGIGVSRVMAALAELNSDDKGLAWPAHLAPATVHVIATG-KDDAVFDTASRFAAELSEQ 524

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD      G +FA  +L+G P  ++VG + + D KVEI+ R +G   ++ + + 
Sbjct: 525 GVEVIYDDRVKVSAGVKFADYELIGVPFAIVVG-RGLKDGKVEIRDRRSGENVEVPVGDA 583

Query: 435 INYASHRFSNNR 446
           +       +  +
Sbjct: 584 LATLDSVMAAAK 595


>gi|292655832|ref|YP_003535729.1| threonyl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291370664|gb|ADE02891.1| threonyl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 643

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 86/445 (19%), Positives = 149/445 (33%), Gaps = 47/445 (10%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           FL + +E   RD      +L L    I +    G+  + P G++ LD +    ++     
Sbjct: 231 FLEMREEAKERDHRKLGQELNLFA--IDETTGPGLPLYQPNGKRILDELADYAKQLNLDA 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P L   +LW +SG Y++Y  +M  L D ND+     P +      IF     S
Sbjct: 289 GYDPVETPHLFRTELWKKSGHYENYVDDMF-LLDVNDEEYGLKPMNCPGHATIFDQQSWS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  +++    +R E R    G+ R   F + D +   + P+  +   N +  + L 
Sbjct: 348 YRDLPVRYFEDGKVYRKEQRGELSGLSRVWSFTIDDGH-LFVRPDQIEDEINLIIDNILT 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +F   GL +    A                  T   +   S +  +          DD  
Sbjct: 407 VFDTFGLDAEVALA------------------TRPDKSVGSDEIWEQAETQLRAVLDDSG 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I     A Y    D       D+L          ++    F    ++      T+ 
Sbjct: 449 IDYGIEAGDGAFYGPKIDF---AFKDALGRKWDGPTVQLD----FNMPDRFD----LTYT 497

Query: 304 GADGKDHYV-QMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G D +DH    +     G+  R    +IE  +                            
Sbjct: 498 GEDNEDHQPVMIHRALYGSYERFFMVLIEHFNGKFPFWLAPEQVRILPI-------SDDQ 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +K+   L+     V  +D    +G +   A     P  VIVG     D  + ++ R
Sbjct: 551 IGYAKKLQYELND--FRVDIEDRSWTLGRKIREAQTDRVPYMVIVGGDEEEDGTISVRDR 608

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                +D+S+E   ++    +   R
Sbjct: 609 KEREAKDVSVEAFRDHLRSEYDEKR 633


>gi|158422571|ref|YP_001523863.1| threonyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
 gi|158329460|dbj|BAF86945.1| threonyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
          Length = 636

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 150/443 (33%), Gaps = 40/443 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      ++ L      +   G+  W P G      + + +R    +  
Sbjct: 210 YLHRLEEAEKRDHRRLGREMDLF--HFQEEGPGVVFWHPKGWSLFQGLVSYMRRRL-KAD 266

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-----NDKAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG +  Y + M ++        +++     P +      IF+ 
Sbjct: 267 YNEVNAPQVLDKSLWETSGHWGWYKENMFKVQSAGEETGDERVFALKPMNCPGHVQIFKH 326

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R E      G+MR R F   DA+ F    + +         
Sbjct: 327 GLKSYRDLPLRLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHVFCTEEQMAAECLKIN-D 385

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L  +   G + I ++  + P     S      A+   ++V          I +E+   
Sbjct: 386 LILSTYADFGFEEITVKLSTRPEKRVGSDAVWDHAEDVMSRVL-------KQIEAESGGR 438

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                L        A Y    +     L D++    +     ++      FG        
Sbjct: 439 IKTGIL----PGEGAFYGPKFEY---TLSDAIGREWQCGTTQVDFNLPERFG-------- 483

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +  ADG+      +     G+M     ++     G   +W   V     ++       
Sbjct: 484 AFYVDADGQKKTPVMIHRAICGSMERFTGILIEHFAGHFPLWLAPVQLAVCTIT------ 537

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           Q   D   ++ +    +   V  D   E+I  +     L   P+Q  +G K  ++  V I
Sbjct: 538 QEADDYAAEVASAARALDLKVELDTRNEKISYKVREHSLAKIPVQFALGKKEAAERTVSI 597

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  ++ + LEE +   +  
Sbjct: 598 RRLGSQEQKVLPLEEALKLLADE 620


>gi|21428938|gb|AAM50188.1| GH20022p [Drosophila melanogaster]
          Length = 747

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 147/432 (34%), Gaps = 40/432 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   I+ E  + G  E+ 
Sbjct: 342 EEAAKRDHRKIGREQELF--FFHELSPGSCFFQPRGAHIYNTLMGFIKAEYRKRGFQEVI 399

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW+ SG +  Y + M       +K     P +      IF +  +S+R LP 
Sbjct: 400 SPNIYNAKLWMTSGHWQHYAENMFSFEAEKEK-FALKPMNCPGHCLIFDNRNRSWRELPL 458

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +               ++   G
Sbjct: 459 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAPEQIKSEM-KGCLEFLKYVYTIFG 517

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P       E    A+                  +     ++        
Sbjct: 518 FSFQLV-LSTRPDNYLGELEQWNDAEK-----------------ALAESLNEFGMPWKEN 559

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    +++L   A       K 
Sbjct: 560 PGDGAFYGPKIDI---TIMDALKRAHQCATIQLD----FQLPIRFNLSYIA---DDGEKK 609

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +     WP  ++P ++ ++ +           + + 
Sbjct: 610 RPVIIHRAILGSVERMIAILT---ENFAGKWPFWLSPRQVMVVPVGP---AYDQYAQSVR 663

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R   +  +
Sbjct: 664 DQLHDAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGE 723

Query: 429 MSLEEVINYASH 440
           +S+ E+I     
Sbjct: 724 VSVAELITKLQK 735


>gi|24583839|ref|NP_723725.1| Threonyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|22946307|gb|AAF53166.2| Threonyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|211938559|gb|ACJ13176.1| FI05224p [Drosophila melanogaster]
          Length = 747

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 147/432 (34%), Gaps = 40/432 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   I+ E  + G  E+ 
Sbjct: 342 EEAAKRDHRKIGREQELF--FFHELSPGSCFFQPRGAHIYNTLMGFIKAEYRKRGFQEVI 399

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW+ SG +  Y + M       +K     P +      IF +  +S+R LP 
Sbjct: 400 SPNIYNAKLWMTSGHWQHYAENMFSFEAEKEK-FALKPMNCPGHCLIFDNRNRSWRELPL 458

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +               ++   G
Sbjct: 459 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAPEQIKSEM-KGCLEFLKYVYTIFG 517

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P       E    A+                  +     ++        
Sbjct: 518 FSFQLV-LSTRPDNYLGELEQWNDAEK-----------------ALAESLNEFGMPWKEN 559

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    +++L   A       K 
Sbjct: 560 PGDGAFYGPKIDI---TIMDALKRAHQCATIQLD----FQLPIRFNLSYIA---DDGEKK 609

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +     WP  ++P ++ ++ +           + + 
Sbjct: 610 RPVIIHRAILGSVERMIAILT---ENFAGKWPFWLSPRQVMVVPVGP---AYDQYAQSVR 663

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R   +  +
Sbjct: 664 DQLHDAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGE 723

Query: 429 MSLEEVINYASH 440
           +S+ E+I     
Sbjct: 724 VSVAELITKLQK 735


>gi|283470478|emb|CAQ49689.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ST398]
          Length = 567

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK   D+    E  
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSK-ESDYAANIEKA 236



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 118/231 (51%), Gaps = 3/231 (1%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENK 275
            E +++      D        + D    +N  V   +            E    S     
Sbjct: 339 KEIKIYADNFVQDLNNLVVGANEDGYHLINVNVGRDFNVDEYGDFRFILEGEKLSDGSGV 398

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD 
Sbjct: 399 AHFAEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDD 458

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GI+WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  A
Sbjct: 459 NGIVWPKSVTPFDLHLISINPKKDDQRELADALYAEFNTK-FDVLYDDRQERAGVKFNDA 517

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 518 DLIGLPLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|254730106|ref|ZP_05188684.1| prolyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
          Length = 213

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 148/210 (70%), Positives = 181/210 (86%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 4   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 63

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 64  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 123

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 124 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 183

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           YLR F R+GL++IPMRA++GPIGGDLSHEF
Sbjct: 184 YLRTFARVGLQAIPMRADTGPIGGDLSHEF 213


>gi|50310653|ref|XP_455348.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644484|emb|CAG98056.1| KLLA0F05918p [Kluyveromyces lactis]
          Length = 744

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 75/446 (16%), Positives = 160/446 (35%), Gaps = 42/446 (9%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L E   RD      +  L     ++ S G   WLP G +  + +  ++R E  + G 
Sbjct: 328 LKFLAEASMRDHRKIGREQELF--YFNEMSPGSCFWLPHGTRIYNTLVDLLRSEYRKRGY 385

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + ++ LW  SG + +Y + M       +      P +      +F++  +SYR
Sbjct: 386 DEVITPNMYNSKLWETSGHWANYKENMFSFEVEKET-FGLKPMNCPGHCLMFKARERSYR 444

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP+      +  R+E      G+ R R F   DA+ F    +        +F     ++
Sbjct: 445 ELPWRVADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCTQDQIENE-IANIFDFLKYVY 503

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G                   EF +   T   +     +  +       T        
Sbjct: 504 GVFG------------------FEFKMELSTRPEKYVGELETWNNAESKLETALKKWGGN 545

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS-LPMSATFKG 304
             +     A Y    D+    + D+L    + +   ++    F    ++     +   +G
Sbjct: 546 WELNPGDGAFYGPKIDIM---ISDALKRWHQCATIQLD----FQLPNRFELEFKTKELEG 598

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +D  +  V +    +G++  + A++    +     WP  ++P +I ++ +       ++ 
Sbjct: 599 SDNYERPVMIHRAILGSVERMTAILT---EHFAGKWPFWLSPRQILVVPVGVK---FQEY 652

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++  ++ + G     D  G  +  +     +L +    IVG + +++  V I++R   
Sbjct: 653 AQEVRDKMVEAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMTEKSVNIRNRDVM 712

Query: 425 IRE----DMSLEEVINYASHRFSNNR 446
             +     + ++ VIN  S      R
Sbjct: 713 DLQGKNATVQVDAVINQLSKLKEEKR 738


>gi|332708267|ref|ZP_08428248.1| threonyl-tRNA synthetase [Lyngbya majuscula 3L]
 gi|332352932|gb|EGJ32491.1| threonyl-tRNA synthetase [Lyngbya majuscula 3L]
          Length = 605

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 147/441 (33%), Gaps = 39/441 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L          G+  W P G      +   +++EQ + G + +  
Sbjct: 194 EALKRDHRKLGKELGLFI-FSDPVGPGLPLWTPKGTVLRTLLEDFLKQEQVKRGYLPVVT 252

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKSY 125
           P +   DL+  SG + +Y ++M  +   +++A       +  P +      I++S ++SY
Sbjct: 253 PHIGRVDLFKVSGHWQNYKEDMFPMMAEDEEAAAAEQGFVLKPMNCPFHIQIYKSELRSY 312

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    +    +R E     G +        D     + P+     +  +    L +F
Sbjct: 313 RELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVMPDQLDQEFLSVVDLILSVF 372

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             L +K+   R                  D    +   S    +    +     D +   
Sbjct: 373 KSLQMKNFKARLS--------------FRDPASDKYIGSDQAWEKAQSAIRRAVDTLGME 418

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +       A Y    D       D L    ++    ++                  +   
Sbjct: 419 SFEAPGEAAFYGPKLDFI---FQDILDREWQLGTVQVDYNLP--------ERFDLEYVAE 467

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG       +     G++  +  ++    +  G  +P  +AP +  L+ +          
Sbjct: 468 DGTRQRPIMIHRAPFGSLERLTGILI---EQYGGDFPFWLAPVQARLLPVG---DAQLPF 521

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++ A++   G     D  GE++G     A+    P+  +VG+K V  + + I+ R  G
Sbjct: 522 AQEVAAKMRSHGIRAEVDTSGERLGKAIRNAEKAKIPVMSVVGAKEVEANSLNIRTRAAG 581

Query: 425 IREDMSLEEVINYASHRFSNN 445
               M +++V+        N 
Sbjct: 582 ELGMMPIDQVVEKMEQANRNR 602


>gi|184155197|ref|YP_001843537.1| prolyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
 gi|226701302|sp|B2GBM5|SYP_LACF3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|183226541|dbj|BAG27057.1| prolyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
          Length = 573

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 102/250 (40%), Positives = 147/250 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P  +E P DAE+ SHK+M+R G I+Q S G++++LPL  + +  +  IIREE
Sbjct: 1   MKQSQMLIPTQKEAPADAEVLSHKMMVRAGYIYQVSAGVWAYLPLAYRVIRKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM +P L  ADLW ESGRY++YG  + +L DR ++  I GPTHEE +T I R 
Sbjct: 61  MDKAGAVEMLLPGLLPADLWKESGRYEAYGDNLFKLKDRRERDFILGPTHEETVTSILRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q K+RDE RPR+G++R +EF M D YSF     G   +Y+    +
Sbjct: 121 AIHSYKKLPLVVYQLQDKYRDEDRPRYGILRGKEFEMLDGYSFSADQAGLDQAYDLQAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    + A+SG +GG  S EF   A  GE  +  +       +    T F 
Sbjct: 181 YRNIFDRIGLDYKVILADSGTMGGKNSQEFSAPAAIGEDVIAYTDGDYAANLEKATTKFT 240

Query: 241 DIISLNSIVE 250
               +    E
Sbjct: 241 PTKQIGEEAE 250



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/184 (36%), Positives = 98/184 (53%), Gaps = 2/184 (1%)

Query: 261 DVHNEKLFDSLPEN-KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           D    +  ++ P+        GIE+GHIF  GT YS    AT    +G+D  + MG YGI
Sbjct: 387 DFRTVQEGETAPDGLPIKFTNGIEIGHIFKLGTHYSEVFGATVLDQNGRDVPMIMGCYGI 446

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R+++A+ E + D  G++WP +VAPF I +I + A  +      E I A L + G +V
Sbjct: 447 GVSRLLSAISEQNADENGLVWPQAVAPFDIHVIPVNAKKEDQMAMAEGITANLEEAGYEV 506

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E+ G +FA ADL+G P++V VG K   +  VEIK R TG   ++  EE+    +
Sbjct: 507 LVDDRKERAGVKFADADLIGVPIRVTVGKK-AGEGIVEIKIRKTGETLEVHKEELATNIA 565

Query: 440 HRFS 443
               
Sbjct: 566 ILLK 569


>gi|154686074|ref|YP_001421235.1| prolyl-tRNA synthetase [Bacillus amyloliquefaciens FZB42]
 gi|166980099|sp|A7Z4S8|SYP_BACA2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|154351925|gb|ABS74004.1| ProS [Bacillus amyloliquefaciens FZB42]
          Length = 564

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 109/254 (42%), Positives = 154/254 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DAE  SHKL+LR G I Q++ G+YS++PL  + + N+  I+REE
Sbjct: 1   MRQSLTLIPTLREVPADAEAKSHKLLLRAGFIRQNTSGVYSYMPLAYRVIQNIQKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P LQ A+ W ESGR+ +YG E++RL DR+ +    G THEEV+T + R 
Sbjct: 61  MEKINAVEMLMPALQQAETWQESGRWYTYGPELMRLKDRHGREFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E  + +Y  M+ +
Sbjct: 121 EVKSYKRLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHASEESLEETYQNMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R  L   P+ A+SG +GG  +HEF+ L++ GE  +  S                
Sbjct: 181 YSSIFARCELNVRPVIADSGAMGGKDTHEFMALSEIGEDTIAYSDGSSYAANTEMAEVVM 240

Query: 241 DIISLNSIVEQWTA 254
           +    +   E    
Sbjct: 241 NSEPSDETPEALEK 254



 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 122/227 (53%), Gaps = 4/227 (1%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G+ +++  +            +  D    N  +E+  A   A +D+   +  D  P+ K 
Sbjct: 340 GDIEIYADQAVKVMVNAVSGANEKDRHYRNVNIER-DASVKAYADLRIIQEGDPSPDGKG 398

Query: 277 VSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                 GIEVG +F  GT+YS  M+AT+   +G+   + MG YGIG  R ++A+ E  HD
Sbjct: 399 TIRFAEGIEVGQVFKLGTRYSEAMNATYLDENGRAQPMLMGCYGIGVSRTLSAIAEQHHD 458

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG+IWP SVAP+ + ++ +   ++  ++  E++Y +    G +V +DD  E+ G +FA 
Sbjct: 459 EKGLIWPKSVAPYDLHILALNMKNEAQKELAEQLYGKFQAEGYEVLYDDRAERAGVKFAD 518

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +DL+G P+++ VG +   +  VE+K R TG   ++S++E+  +   +
Sbjct: 519 SDLIGLPIRITVGKR-ADEGIVEVKIRKTGESAEVSVDELSEFIKTK 564


>gi|297571384|ref|YP_003697158.1| threonyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931731|gb|ADH92539.1| threonyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
          Length = 670

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 63/451 (13%), Positives = 141/451 (31%), Gaps = 49/451 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L +    +   G+  + P G      +    R++        
Sbjct: 252 RIAEAERRDHRKLGSELDLFS-FPDEIGSGLAVFHPKGGIIRMEMENYSRQKHIEGNYSF 310

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTD 116
           ++ P +   +L+  SG  D Y   M                 +        P +  +   
Sbjct: 311 VNTPHITKGNLFEVSGHLDFYADGMYPPMHMDEERDADGNITKQGADYYLKPMNCPMHNL 370

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +++S  +SYR LP   ++    +R+E      G+ R+R F   DA+ +    +       
Sbjct: 371 VYKSRGRSYRELPLRLFEFGTVYRNEASGVVHGLTRARGFTQDDAHIYCTRDQMKDEL-T 429

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           ++    L +    GL    +   +                    +     D  +    + 
Sbjct: 430 RLLTFVLDLLKDYGLDDFYLELST----------------KNPKKFVGDDDVWEESTRTL 473

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
               +          +  A Y       + +  D+L    ++S   ++    F    ++ 
Sbjct: 474 QEVAEASGLELVPDPEGAAFYGPKI---SVQAKDALGRTWQMSTIQLD----FNLPERFD 526

Query: 296 LPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 + G DG+ H    +     G++     V+    +     +P  +AP ++  + +
Sbjct: 527 ----LEYTGPDGERHRPVMIHRALFGSIERFFGVLT---EHYAGAFPAWLAPVQVRCVPV 579

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   D  + +  +L   G  V  D   ++   +   A     P  +I G + +   
Sbjct: 580 A---DAFNDYLDSVADKLRAQGVRVEVDKSDDRFPKKIRNASKDKVPFTLIAGGEDMEAG 636

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V  + R       ++++E +        N+
Sbjct: 637 AVSFRMRDGSQDNGVAVDEAVARIVDHIRNH 667


>gi|332265242|ref|XP_003281637.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic isoform
           2 [Nomascus leucogenys]
          Length = 713

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 151/447 (33%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 296 KMMRNWEKSQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLTDFIREE 353

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y + M       D      P +      +F  
Sbjct: 354 YHKRDFTEVLSPNMYNSKLWEASGHWQHYSENMFTFEIEKDT-FALKPMNCPGHCLMFAH 412

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 413 RPRSWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLQ 471

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  +       +  
Sbjct: 472 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEIEMWNEAEKQLQSSL 513

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 514 MDFGEPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPVRFNLTYV 566

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 567 SK--DGDDKKRPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPHQVMVIPVGP--- 618

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C     ++ +   + G     D D    +  +   A L  +   ++VG K   ++ V +
Sbjct: 619 ACEKYALQVSSEFFEEGFMADVDLDHNCTLNKKIRNAQLAQYNFILVVGEKEKVNNAVNV 678

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   I  ++ +   I+   +     
Sbjct: 679 RTRDNKIHGEILVTSAIDKLKNLKKTR 705


>gi|258423896|ref|ZP_05686781.1| prolyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|257845925|gb|EEV69954.1| prolyl-tRNA synthetase [Staphylococcus aureus A9635]
          Length = 567

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 162/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L+ G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK   D+    E  
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSK-ESDYAANIEKA 236



 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 71/188 (37%), Positives = 110/188 (58%), Gaps = 4/188 (2%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D       + L +   V+    GIEVG +F  GTKYS  M+ATF    GK   + MG YG
Sbjct: 382 DFRFILEGEKLSDGSGVAHFAEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R ++A++E +HD  GI+WP SV PF + LI+I       R+  E +YA  +    D
Sbjct: 442 IGISRTLSAIVEQNHDDNGIVWPKSVTPFDLHLISINPKKDDQRELAEALYAEFNTK-FD 500

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V +DD  E+ G +F  ADL+G PL+++VG +  S+  VE+K RLTG  E++ +++++   
Sbjct: 501 VLYDDRQERAGVKFNDADLIGLPLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVI 559

Query: 439 SHRFSNNR 446
           ++++ N +
Sbjct: 560 TNKYDNLK 567


>gi|227504819|ref|ZP_03934868.1| prolyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
 gi|227198669|gb|EEI78717.1| prolyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
          Length = 591

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 105/283 (37%), Positives = 154/283 (54%), Gaps = 4/283 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G + + + G+Y+WLPLG + L  +  I+REE 
Sbjct: 4   RLSNLFLRTLREDPADAEVLSHKLLVRAGYVRRAAPGVYTWLPLGLRTLTKIENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  EM  P L   + +  + R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 64  NAIGGQEMLFPALLPREPYELTDRWTEYGDNLFRLKDRKGADMLLGPTHEEMFAGAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T EG   SY +   +Y
Sbjct: 124 YSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDEGLDESYMRHRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN--TDF 239
             IF+RL +     +A SG +GG  S EF+ ++  GE   F      D+    E   T  
Sbjct: 184 QNIFNRLEIDYAICKATSGAMGGSASEEFLAVSPAGE-DTFVRATEGDYAANVEAVVTPA 242

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            +   L  + E         S+  +  +  +  E  +V++R +
Sbjct: 243 PEETPLEGLAEA-KVYETPDSETIDTLVEWANSEGIQVNSRAV 284



 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 91/207 (43%), Gaps = 6/207 (2%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLP 297
           +    + + V           +    K  D  P         RGIE+GHIF  G KY+  
Sbjct: 387 EKNHHVVNCVAGRDFEVDEFIEAAEIKEGDPAPGGMGTLTLERGIELGHIFQLGRKYTKA 446

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                   +GK     MGSYGIG  R++A + E   D KG+ WP  VAPF++ +      
Sbjct: 447 FDVQILDENGKRAVPTMGSYGIGVSRMMAVLAEQQADEKGLRWPVDVAPFQVHVAVAN-K 505

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           D    +A +K+   L   G +V +DD      G +F  A+LLG P   I+G +  +D  +
Sbjct: 506 DAAALEAGQKLVEDLDAAGIEVLFDDRPKVSPGVKFKDAELLGMPFIAILG-RSFADGII 564

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E++ R  G   ++  +E+++       
Sbjct: 565 ELRIRG-GETLEVPADEIVDKLLELVR 590


>gi|94985607|ref|YP_604971.1| threonyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
 gi|123079875|sp|Q1IY82|SYT_DEIGD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94555888|gb|ABF45802.1| threonyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
          Length = 649

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 70/447 (15%), Positives = 148/447 (33%), Gaps = 40/447 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +Y   + +   RD      +L L   +I     KG+  WLP G    + +   +RE+Q +
Sbjct: 236 EYLERLEEARRRDHRKLGRELELF--LIDPLVGKGLPMWLPNGTVLREELTRFLREQQFQ 293

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                +  P + + DL+  SG Y  Y          +++  +  P +      I+ S  +
Sbjct: 294 RDYQGVVTPNIGNLDLFRTSGHYPYYSDSQFEPLSVDEEQYMLKPMNCPFHIRIYASKPR 353

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +    +R E+     G+ R R F   DA+ F    +  K  +  +    +
Sbjct: 354 SYRDLPVRLAEFGTVYRYEMSGELNGLTRVRGFTQDDAHIFARPDQLKKE-FLDVLDLTV 412

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    G+  +  R              + + D    +        +          +++
Sbjct: 413 LVLKTFGMNDVRFR--------------VGVRDPASDKYVGDPAQWEVAERQIIEAVEEV 458

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               ++     A Y    D     + D L    ++    ++                 T+
Sbjct: 459 GLPYTVEPGDAAFYGPKLDF---VVKDVLGREWQLGTIQVDYNLP--------ERFDLTY 507

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G DG++H    +     G++     ++   + G    W        I +          
Sbjct: 508 TGEDGQEHRPVMIHRAPFGSLERFVGILIEHYGGDFPFWLAPRQIMLIPIA------DRH 561

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               + +       G     DD   ++ ++   A+L   P+ +IVG +  +  +V ++ R
Sbjct: 562 NAYAQTLANEFKAAGLRAEVDDSNNRMNAKVRNAELHKIPVMLIVGDQEEARREVSVRER 621

Query: 422 ---LTGIREDMSLEEVINYASHRFSNN 445
                  R+ +    ++     R+   
Sbjct: 622 TPEGHKERKGVDFTALLAELQERYRTR 648


>gi|308173620|ref|YP_003920325.1| prolyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307606484|emb|CBI42855.1| prolyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|328553448|gb|AEB23940.1| prolyl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
 gi|328911761|gb|AEB63357.1| prolyl-tRNA synthetase [Bacillus amyloliquefaciens LL3]
          Length = 564

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 109/254 (42%), Positives = 154/254 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DAE  SHKL+LR G I Q++ G+YS++PL  + + N+  I+REE
Sbjct: 1   MRQSLTLIPTLREVPADAEAKSHKLLLRAGFIRQNTSGVYSYMPLAYRVIQNIQKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P LQ A+ W ESGR+ +YG E++RL DR+ +    G THEEV+T + R 
Sbjct: 61  MEKINAVEMLMPALQQAETWQESGRWYTYGPELMRLKDRHGREFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E  + +Y  M+ +
Sbjct: 121 EVKSYKRLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHASEESLEETYQNMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R  L   P+ A+SG +GG  +HEF+ L++ GE  +  S                
Sbjct: 181 YSSIFARCELNVRPVIADSGAMGGKDTHEFMALSEIGEDTIAYSDGSSYAANTEMAEVVM 240

Query: 241 DIISLNSIVEQWTA 254
           +    +   E    
Sbjct: 241 NTEPSDEKPEALEK 254



 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 4/227 (1%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G+ +++  +            +  D    N  +E+  A   A +D+   +  D  P+ K 
Sbjct: 340 GDIEIYADQAVKVMVNAVSGANEKDRHYRNVNIER-DASVKAYADLRIIQEGDPSPDGKG 398

Query: 277 VSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                 GIEVG +F  GT+YS  M+AT+   +G+   + MG YGIG  R ++A+ E  HD
Sbjct: 399 TIRFAEGIEVGQVFKLGTRYSEAMNATYLDENGRAQPMLMGCYGIGVSRTLSAIAEQHHD 458

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            KG+IWP SVAP+ + ++ +   ++  ++  EK+Y +    G +V +DD  E+ G +FA 
Sbjct: 459 EKGLIWPKSVAPYDLHILALNMKNEAQKELAEKLYGKFQAEGYEVLYDDRAERAGVKFAD 518

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +DL+G P+++ VG +   +  VE+K R TG   ++S++E+  +   +
Sbjct: 519 SDLIGLPIRITVGKR-ADEGIVEVKIRKTGESAEVSVDELSEFIKTK 564


>gi|62261354|gb|AAX77983.1| unknown protein [synthetic construct]
          Length = 600

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 113/333 (33%), Positives = 188/333 (56%), Gaps = 6/333 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+PLG K L  +  I+R+E
Sbjct: 27  MKATQTLIATTKELPKEAVLISHQYMLKAGLIKKLASGIYTWMPLGLKVLQKIQNIVRDE 86

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 87  MNKAGASELLLPSILPSELLQETHRWDKFGPELLKLHDRHNRDFCYGPTHEEPIVDMARD 146

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +  +++YN M+ +
Sbjct: 147 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLRNTYNTMYAT 206

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  I  ++GL   P++A++G IGGD SHEF VLA+ GE  + C  +  D+    E     
Sbjct: 207 YCNILDKIGLAYRPVKADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDYAANIELATYA 265

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
            +D    ++  + +E+   P   T +   +++   + +  +        G+ F    +  
Sbjct: 266 KSDLSKRVNSQNTIEKIHTPNIKTIEKLCKEMSFDIKKTIKTMVIKDAGGNFFALVIRGD 325

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             ++ T      +       +       +  A 
Sbjct: 326 HELNETKINKLDQIIAPYTLATKEEIFSIFNAN 358



 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 69/183 (37%), Positives = 103/183 (56%), Gaps = 3/183 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ K       GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 409 ADIRNVVTGDISPDGKGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 468

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVG 376
           G G  RV+AA IE SHD  GIIWP+S+AP++++++ I        ++  +K+Y  L   G
Sbjct: 469 GFGVSRVMAAAIEQSHDENGIIWPESIAPYQVAILPINYNKSDKIKEVADKLYQDLLGDG 528

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  ++++++ E+I 
Sbjct: 529 IDVLLDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITIAELIK 588

Query: 437 YAS 439
              
Sbjct: 589 ILK 591


>gi|260757796|ref|ZP_05870144.1| prolyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|260668114|gb|EEX55054.1| prolyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
          Length = 210

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 148/210 (70%), Positives = 181/210 (86%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFLPIL+ENP++AEI SH+LMLR+GMI Q S GIYSWLP+G K L+ V  IIREE
Sbjct: 1   MRLSRYFLPILKENPKEAEIVSHRLMLRSGMIRQQSAGIYSWLPIGLKVLNKVCTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           QNR GA E+ +PT+QSADLW ESGRYD+YGKEMLR+ DR  + M++GPT+EE++TDIFRS
Sbjct: 61  QNRAGANEILMPTIQSADLWRESGRYDAYGKEMLRIQDRQKREMLFGPTNEEMVTDIFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +++SY++LP   Y IQ KFRDE+RPRFGVMRSREFLMKDAYSFDL  EG+K +Y +MFVS
Sbjct: 121 YVRSYKDLPLNLYHIQWKFRDEVRPRFGVMRSREFLMKDAYSFDLDYEGAKMAYYRMFVS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           YLR F R+GL++IPMRA++GPIGGDLSHEF
Sbjct: 181 YLRTFARVGLQAIPMRADTGPIGGDLSHEF 210


>gi|320104617|ref|YP_004180208.1| prolyl-tRNA synthetase [Isosphaera pallida ATCC 43644]
 gi|319751899|gb|ADV63659.1| prolyl-tRNA synthetase [Isosphaera pallida ATCC 43644]
          Length = 595

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 118/261 (45%), Positives = 156/261 (59%), Gaps = 1/261 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK  +P L+E P  A   SH+L+L+ GMI Q   G Y++LPLG + L+ + AI+R+ 
Sbjct: 1   MRWSKALIPTLKEAPAGAVAPSHQLLLKAGMIRQLGSGAYTYLPLGWRVLNKIVAIVRKG 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA EM +P LQ  +LW E+GRY ++G  +++L    D+ M  GPTHEEV+TD+ R 
Sbjct: 61  MDDAGAQEMLMPALQPVELWKETGRYQTFGDLLMQLKVGGDQTMALGPTHEEVVTDLARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP T YQIQ KFRDE RPRFGV+R+REFLMKDAYSFD   +    SY+ M+ +
Sbjct: 121 LIKSYRQLPMTLYQIQTKFRDEPRPRFGVLRTREFLMKDAYSFDANLDQLNQSYDAMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF   G+  + + AESGPIGGD SHEF+V A  GE  +        +    E     
Sbjct: 181 YQRIFDECGIPYVVVEAESGPIGGDSSHEFMVPASIGEDVIL-QCPASGYAANVERAAVG 239

Query: 241 DIISLNSIVEQWTAPYAATSD 261
            +           A  A   +
Sbjct: 240 ALKLPTQTERVARAAVAPPFE 260



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/191 (36%), Positives = 102/191 (53%), Gaps = 2/191 (1%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            L  +V     P    +D+ N    D  P      +  RGIEVGH+F  GTKYS  M AT
Sbjct: 371 HLTGVVPGRDFPLDRVADLRNAVAGDPCPLSGQPMIETRGIEVGHVFKLGTKYSKAMGAT 430

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F    G    + MG YGIG  R++AA +E+ HD  GI+WP ++AP+++ LI +K  +   
Sbjct: 431 FLDETGTAQDIIMGCYGIGINRILAAAVEALHDAHGIVWPLAIAPYEVILIPLKVSNPDL 490

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E +   L+  G DV  DD   Q G +F  ADL+G PL+V++G + + + K+E+K R
Sbjct: 491 MAVVETLERELAAAGIDVLTDDRDHQPGFKFKDADLIGIPLRVVIGERGLKEGKLELKWR 550

Query: 422 LTGIREDMSLE 432
                + + +E
Sbjct: 551 HEKEADSIPVE 561


>gi|294790871|ref|ZP_06756029.1| threonine--tRNA ligase [Scardovia inopinata F0304]
 gi|294458768|gb|EFG27121.1| threonine--tRNA ligase [Scardovia inopinata F0304]
          Length = 685

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 69/459 (15%), Positives = 142/459 (30%), Gaps = 50/459 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L+E   RD      ++ L +    +   G+  + P G   ++ +    R E  +
Sbjct: 244 KAYLQRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMKEYSRIEHRK 302

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 R        P + 
Sbjct: 303 NHYSFVQTPHITKGGLYETSGHLQWYKDGMYPPMHLDEEKDANGKVIREGFDYYLKPMNC 362

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 363 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHIYCTREQMK 422

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L++    GL    +   +                  E +   S +  + 
Sbjct: 423 GEL-TSLLSFVLKLLKDFGLNDFYLELST----------------KDEHKYVGSDEIWEE 465

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +      D            A Y       + +  D+L    ++S   ++      F
Sbjct: 466 ATRTLAEVARDSGLDLVDDPGGAAFYGPKI---SVQARDALGRTWQLSTIQLDFNLPERF 522

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           G          +  ADG       +     GA+    A++   + G    W   V    +
Sbjct: 523 G--------LEYIAADGTRQRPVMIHRALFGAIERFFAILLEHYAGAFPAWLAPVQVLGV 574

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +       +   D  ++I  RL +       D   ++ G +   A     P  +IVG  
Sbjct: 575 PV------SEANSDYLKEILDRLDESLVRCEMDASDDRFGKKIRNASKSKTPFILIVGDD 628

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
             +   V  + R       ++++  + + +   ++++ +
Sbjct: 629 DQARGAVSFRFRDGSQLNGVAVDNALAWINQAITSHQQI 667


>gi|185179115|ref|ZP_02964840.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188024051|ref|ZP_02996803.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188518364|ref|ZP_03003871.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|225551314|ref|ZP_03772260.1| threonine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|184209012|gb|EDU06055.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188019085|gb|EDU57125.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188998237|gb|EDU67334.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|225379129|gb|EEH01494.1| threonine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 580

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 157/444 (35%), Gaps = 34/444 (7%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y + + +   RD       L L T   +   +G+  WLP G      V   I E + +  
Sbjct: 168 YLVDLQERKERDHRKIGKDLNLFT-FNNLAGQGLPIWLPNGTIIKSQVQKFINEVEFQFN 226

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S DL+  SG +D Y   +      +++ +I  P      T ++ + ++SY
Sbjct: 227 FDTVITPILGSIDLYKTSGHWDHYKDNIFSPVQIDNEVLILRPMTCPHHTLVYSNELRSY 286

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R E      G  R RE +++D + F    +         F      
Sbjct: 287 RSLPIRLSEHSILHRYESSGGLTGFERVREMILEDCHVFCRPDQIEHE-VINAFKMIQEA 345

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK-DFMDFPIPSENTDFDDII 243
              LG+K+  +                   D  + + +       +    +      D  
Sbjct: 346 QEGLGIKTFEIHLSLN--------------DPNDKEKYYDDPQMWEHSQNTLRKMLKDHK 391

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                +    A Y    D   + +   L     VS   ++    F    ++    + ++ 
Sbjct: 392 IPYKEMVGEAAFYGPKIDFQVKTV---LNRIITVSTIQLD----FLLPNRF----NLSYI 440

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             + +     M    IG +     ++    +    + P  ++P ++ +I +  +  +  D
Sbjct: 441 NENNEQSTPVMIH--IGIIGTYERLLAILLEQTKGVLPLWLSPVQVVIIPVNEN--LHAD 496

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRL 422
             +++ A+L K       D   E++  +   A +   P Q++VG + + + K V  +   
Sbjct: 497 YAKELNAKLRKHLVRSSLDLRNERLSKKIREAQIQKIPYQIVVGDEEIKNDKMVTYRRYG 556

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           +     +S+++ I    +   + +
Sbjct: 557 SEETTTVSVDDFIKVLENDIRSKK 580


>gi|73951037|ref|XP_536172.2| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 1
           [Canis familiaris]
          Length = 802

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 153/447 (34%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 385 KMMKTWEKFQEEAKNRDHRKVGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLMDFIREE 442

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    E+  P + ++ LW  SG +  Y + M    D         P +      +F  
Sbjct: 443 YHRRNFTEVLSPNMFNSKLWETSGHWQHYSENMFTF-DIEKDTFALKPMNCPGHCLMFAH 501

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P       +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 502 RPRSWREMPVRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLQ 560

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  D          
Sbjct: 561 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEVELWDEAEKQLQNSL 602

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 603 VEFGKPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 655

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K + V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 656 SK--DGDDKRNPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP--- 707

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C     ++ +   + G     D D    +  +   A L  +   ++VG K  +++ V +
Sbjct: 708 TCEKYALQVSSAFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKTNNAVNV 767

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   I  ++S+   I+   +   + 
Sbjct: 768 RTRDNKIHGEISVTSAIHKLKNLKKSR 794


>gi|333024111|ref|ZP_08452175.1| putative prolyl-tRNA synthetase [Streptomyces sp. Tu6071]
 gi|332743963|gb|EGJ74404.1| putative prolyl-tRNA synthetase [Streptomyces sp. Tu6071]
          Length = 563

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 111/269 (41%), Positives = 154/269 (57%), Gaps = 4/269 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + + + GI+SWLPLG+K LDN++ I+REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRTAAGIWSWLPLGKKVLDNISQIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGAQEVLLPALLPREPYEASGRWEEYGDLLFRLKDRKGADYLLGPTHEEIFTQVVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ+Q K+RDE RPR GV+R REF+MKD+YSFD T EG   SY     +Y
Sbjct: 126 CTSYKDLPVMLYQVQTKYRDEARPRSGVLRGREFVMKDSYSFDTTDEGLAESYALHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +IF RLGL    + A SG +GG  S EF+  A  GE   F       F   +E   F  
Sbjct: 186 RKIFARLGLDYRIVSAVSGAMGGSASEEFLAPAAAGE-DTFADCPNCGFAANTEAVTFKG 244

Query: 242 I---ISLNSIVEQWTAPYAATSDVHNEKL 267
                S +  VE+   P   T +   E L
Sbjct: 245 AAMDGSAHGPVEELDTPDTPTIESLAEHL 273



 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 64/177 (36%), Positives = 89/177 (50%), Gaps = 6/177 (3%)

Query: 266 KLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           +  D  P   +     R IE+GHIF  G KY+        G +GK   V MGSYGIG  R
Sbjct: 389 EEGDPCPNCGQGLHLDRAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVSR 448

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            VAA+ E + D KG+ WP  VAP  +    + A   +  +   +I  +L+  G  V  DD
Sbjct: 449 AVAALAEQTADDKGLCWPAEVAPADVH--VVAAGKVLQTELALEIADKLAAAGARVLVDD 506

Query: 384 M-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             G   G +F  A+L+G P  VI G +      VE+K R TG RE++S+EE +   +
Sbjct: 507 RAGVSPGVKFTDAELIGVPKTVIAGRRSAE-GIVELKDRRTGEREELSVEEAVARLT 562


>gi|302522218|ref|ZP_07274560.1| prolyl-tRNA synthetase [Streptomyces sp. SPB78]
 gi|302431113|gb|EFL02929.1| prolyl-tRNA synthetase [Streptomyces sp. SPB78]
          Length = 563

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 111/269 (41%), Positives = 154/269 (57%), Gaps = 4/269 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + + + GI+SWLPLG+K LDN++ I+REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRTAAGIWSWLPLGKKVLDNISQIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGAQEVLLPALLPREPYEASGRWEEYGDLLFRLKDRKGADYLLGPTHEEIFTQVVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ+Q K+RDE RPR GV+R REF+MKD+YSFD T EG   SY     +Y
Sbjct: 126 CTSYKDLPVMLYQVQTKYRDEARPRSGVLRGREFVMKDSYSFDTTDEGLAESYALHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +IF RLGL    + A SG +GG  S EF+  A  GE   F       F   +E   F  
Sbjct: 186 RKIFARLGLDYRIVSAVSGAMGGSASEEFLAPAAAGE-DTFADCPNCGFAANTEAVTFKG 244

Query: 242 I---ISLNSIVEQWTAPYAATSDVHNEKL 267
                S +  VE+   P   T +   E L
Sbjct: 245 AAVDGSAHGPVEELDTPDTPTIESLAEHL 273



 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 89/177 (50%), Gaps = 6/177 (3%)

Query: 266 KLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           +  D  P   +     R IE+GHIF  G KY+        G +GK   V MGSYGIG  R
Sbjct: 389 EEGDPCPNCGQGLHLDRAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVSR 448

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            VAA+ E + D KG+ WP  V+P  +    + A   +  +   +I  +L+  G  V  DD
Sbjct: 449 AVAALAEQTADDKGLCWPAEVSPADVH--VVAAGKVLQTELALEIADKLAAAGARVLVDD 506

Query: 384 M-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             G   G +F  A+L+G P  VI G +      VE+K R TG RE++S+EE +   +
Sbjct: 507 RAGVSPGVKFTDAELIGVPKTVIAGRRSAE-GIVELKDRRTGEREELSVEEAVARLT 562


>gi|25013040|gb|AAN71609.1| RH56418p [Drosophila melanogaster]
 gi|220950596|gb|ACL87841.1| Aats-thr-PB [synthetic construct]
          Length = 711

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 147/432 (34%), Gaps = 40/432 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   I+ E  + G  E+ 
Sbjct: 306 EEAAKRDHRKIGREQELF--FFHELSPGSCFFQPRGAHIYNTLMGFIKAEYRKRGFQEVI 363

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW+ SG +  Y + M       +K     P +      IF +  +S+R LP 
Sbjct: 364 SPNIYNAKLWMTSGHWQHYAENMFSFEAEKEK-FALKPMNCPGHCLIFDNRNRSWRELPL 422

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +               ++   G
Sbjct: 423 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAPEQIKSEM-KGCLEFLKYVYTIFG 481

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P       E    A+                  +     ++        
Sbjct: 482 FSFQLV-LSTRPDNYLGELEQWNDAEK-----------------ALAESLNEFGMPWKEN 523

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    +++L   A       K 
Sbjct: 524 PGDGAFYGPKIDI---TIMDALKRAHQCATIQLD----FQLPIRFNLSYIA---DDGEKK 573

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +     WP  ++P ++ ++ +           + + 
Sbjct: 574 RPVIIHRAILGSVERMIAILT---ENFAGKWPFWLSPRQVMVVPVGP---AYDQYAQSVR 627

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R   +  +
Sbjct: 628 DQLHDAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGE 687

Query: 429 MSLEEVINYASH 440
           +S+ E+I     
Sbjct: 688 VSVAELITKLQK 699


>gi|170575688|ref|XP_001893343.1| threonyl-tRNA synthetase, cytoplasmic [Brugia malayi]
 gi|158600735|gb|EDP37841.1| threonyl-tRNA synthetase, cytoplasmic, putative [Brugia malayi]
          Length = 685

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 64/433 (14%), Positives = 137/433 (31%), Gaps = 42/433 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD         L     H  S G   W P G    + +   IR+E  + G  E+ 
Sbjct: 275 EEAAKRDHRKIGRDQELY--FFHPLSPGSAFWYPKGAHIYNTLCNFIRKEYRKRGFTEVI 332

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + ++ LW +SG ++ Y   M +  D   +     P +      ++    +++  LP 
Sbjct: 333 SPNMYNSKLWEQSGHWEHYSDNMFK-IDIEKETFGLKPMNCPGHCLMYSHMPRTHNELPL 391

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            +    +  R+E+     G+ R R F   DA+ F    +  +             +  + 
Sbjct: 392 RYADFGVLHRNEMSGALTGLTRVRRFQQDDAHIFCRQDQVVEE-IMGCIDFLKYAYLDVF 450

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P                E       +  +          +       + 
Sbjct: 451 GFTFKLNLSTRP----------------EVGYLGDIETWNAAEDKLREALNASGHKWELN 494

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    ++      ++   + + 
Sbjct: 495 PGDGAFYGPKIDI---TIQDALRRLHQCATIQLD----FQLPVRFD----LSYFDENNER 543

Query: 310 HYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               M    +     R+ A + E+             A             +   D   K
Sbjct: 544 QRPVMIHRALLGSIERMTAILAENYGGKWPFWLSPRQAKVITV-------HESQNDYGRK 596

Query: 368 IYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +   + + G +V +D D  + +  Q   A +  F   ++VG     +  V ++ R   +R
Sbjct: 597 VQQEIYEAGFEVEFDVDSSDTLNKQIRNAQIAQFNFILVVGPAEARNGTVNVRTRDNAVR 656

Query: 427 EDMSLEEVINYAS 439
            ++ LE++I    
Sbjct: 657 GEVKLEDLIEKFK 669


>gi|323342132|ref|ZP_08082365.1| threonine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464557|gb|EFY09750.1| threonine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 596

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 144/442 (32%), Gaps = 40/442 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+    RD +    +L L   M+ +   G   WLP G      ++        + G
Sbjct: 185 YLEWLEAAKARDHKKLGKELELF--MMSEFGPGFPFWLPNGMTLRHALDEYYYNAHIKRG 242

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +    PT+ + +LW  SG +++Y + M      +D+     P +      ++++ + SY
Sbjct: 243 YVFTQTPTMLNKELWEVSGHWENYRENMYTST-IDDREFAIKPMNCPGGMLVYKNGLHSY 301

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    ++    R E      G+ R R F   DA+ F    +        +      I
Sbjct: 302 RDLPIRLAEMGHVHRHEASGALNGLFRVRSFTQDDAHLFMREDQLQDEIVE-ILDFINEI 360

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   GL        + P                E +     D  D    +          
Sbjct: 361 YSTFGLSYSI-ELSTRP----------------EDKYIGDIDVWDRSEQALKEACMAAGV 403

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D    K+ DSL    +     +++                T+  
Sbjct: 404 DFKINEGDGAFYGPKLDF---KVRDSLNRVWQCGTVQLDMNLP--------ERFDLTYVA 452

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DGK      +     G++     ++     G   +W          +  I  + +   D
Sbjct: 453 EDGKKKRPIMLHRAIFGSIERFIGILIEHFAGGFPLW-----MAPKQIEIIPVNTEFHMD 507

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L + G     D   E++G +   A     PLQ+I+G + + D  V ++    
Sbjct: 508 YANEVCDLLLEKGIRAHVDGRNEKLGYRLREAQKNKIPLQLIIGDQEIEDRSVNVRRYGE 567

Query: 424 GIREDMSLEEVINYASHRFSNN 445
             +    L+  +    +  S  
Sbjct: 568 RAQNPFDLDVFMQMVENEISTR 589


>gi|28378679|ref|NP_785571.1| prolyl-tRNA synthetase [Lactobacillus plantarum WCFS1]
 gi|254556877|ref|YP_003063294.1| prolyl-tRNA synthetase [Lactobacillus plantarum JDM1]
 gi|300768192|ref|ZP_07078097.1| proline--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308180820|ref|YP_003924948.1| prolyl-tRNA synthetase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|81840975|sp|Q88VK1|SYP_LACPL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28271515|emb|CAD64420.1| proline--tRNA ligase [Lactobacillus plantarum WCFS1]
 gi|254045804|gb|ACT62597.1| prolyl-tRNA synthetase [Lactobacillus plantarum JDM1]
 gi|300494256|gb|EFK29419.1| proline--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308046311|gb|ADN98854.1| prolyl-tRNA synthetase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 569

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 106/235 (45%), Positives = 146/235 (62%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE  SH++MLR G I Q S G+Y++LPL  + L N+  IIR+E
Sbjct: 1   MKQSKLLIPTLKEVPNDAEALSHQMMLRAGYIRQISAGMYAYLPLAYRVLTNIEKIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A EM VP +  A+LW  +GRY++YG E+ +L +R+D+  I GPTHEE  T I R 
Sbjct: 61  MEKIDAAEMLVPAVIPAELWKATGRYETYGPELFKLKNRHDREFILGPTHEETFTSIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ K+RDE RPR+G++R REF+MKDAYSF         ++  M  +
Sbjct: 121 EIKSYKRLPLTLYQIQAKYRDEDRPRYGLLRGREFIMKDAYSFHADEASLDDTFQDMAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R+GLK   +  + G +GG  S E+  +A  GE  +  S    D+    E
Sbjct: 181 YQNIFERVGLKFRSIIGDGGAMGGKDSREYSAIAPVGEDTIVYSD-ASDYAANLE 234



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 110/207 (53%), Gaps = 3/207 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLP 297
           +D     ++  +      A  D+   +  +  P+   V    +GIE+GHIF  GT+YS  
Sbjct: 362 EDGHHFTNVNPERDFHAEAYVDIRFVQEGELSPDGAGVLKFTKGIEIGHIFKLGTRYSKD 421

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           + A    A+G++  V MG YGIG  R+++A+ E   D  G+IWP ++APF + +I +   
Sbjct: 422 LHAEVLDANGRNIPVIMGCYGIGVSRLLSAIAEQRADENGLIWPKAIAPFDVHVIPVNPK 481

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  +++ A+L   G +V +DD  E+ G +FA +DL+G P ++ +G K  S+  VE
Sbjct: 482 KADQVEVADQVEAQLEAAGYNVLYDDRKERPGVKFADSDLMGIPARITIGKK-ASEGIVE 540

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           IK R TG   ++  EE+ N  +    N
Sbjct: 541 IKLRQTGETLEVKQEEIANNLAVLLKN 567


>gi|118095671|ref|XP_413774.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 903

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 152/441 (34%), Gaps = 43/441 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H  S G   +LP G    + +   IREE +R    E+ 
Sbjct: 496 EEARNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFLYNTLTDFIREEYHRRNFTEVV 553

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + ++ LW  SG +  Y + M       +      P +      +F    +S+R +P 
Sbjct: 554 SPNIFNSKLWETSGHWQHYSENMFSFEIEKET-FALKPMNCPGHCLMFAHRPRSWREMPL 612

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ +    +  +            ++   G
Sbjct: 613 RLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIYCTIEQ-IEEEIKGCLDFLKSVYSIFG 671

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F +   T         +  D          D+     ++ 
Sbjct: 672 FT------------------FQLHLSTRPENYLGELEIWDHAEKQLQNSLDNFGVQWTLN 713

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+   K+ D+L    + +   ++    F    ++    + T+ G DG D
Sbjct: 714 PGDGAFYGPKIDI---KIKDALGRYHQCATIQLD----FQLPIRF----NLTYVGKDGDD 762

Query: 310 --HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               V +    +G++  + A++    +  G  WP  ++P ++ ++ +    +   +  ++
Sbjct: 763 KKRPVIIHRAVLGSVERMIAILA---ENYGGKWPFWLSPRQVMVVPVGPTSE---EYAQQ 816

Query: 368 IYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           + +   + G     D D    +  +   A L  +   ++VG K  ++  V ++ R   + 
Sbjct: 817 VCSEFFEAGFMSDVDLDQSCTLNKKIRNAQLAQYNFILVVGEKEKANHAVNVRTRDNKVH 876

Query: 427 EDMSLEEVINYASHRFSNNRP 447
            ++S+   I       S   P
Sbjct: 877 GEISVSSAIEKLKKFKSLRLP 897


>gi|227874914|ref|ZP_03993066.1| proline--tRNA ligase [Mobiluncus mulieris ATCC 35243]
 gi|269976484|ref|ZP_06183469.1| prolyl-tRNA synthetase [Mobiluncus mulieris 28-1]
 gi|306818238|ref|ZP_07451968.1| proline--tRNA ligase [Mobiluncus mulieris ATCC 35239]
 gi|307701739|ref|ZP_07638753.1| proline--tRNA ligase [Mobiluncus mulieris FB024-16]
 gi|227844491|gb|EEJ54648.1| proline--tRNA ligase [Mobiluncus mulieris ATCC 35243]
 gi|269935285|gb|EEZ91834.1| prolyl-tRNA synthetase [Mobiluncus mulieris 28-1]
 gi|304648977|gb|EFM46272.1| proline--tRNA ligase [Mobiluncus mulieris ATCC 35239]
 gi|307612997|gb|EFN92252.1| proline--tRNA ligase [Mobiluncus mulieris FB024-16]
          Length = 633

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 106/277 (38%), Positives = 153/277 (55%), Gaps = 2/277 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S YF   L+E+P +AE+ SHKL++R G I + + GIY+WLPLG + L N+  ++REE 
Sbjct: 4   RMSSYFARTLREDPVEAEVDSHKLLVRAGYIRRAAPGIYTWLPLGLRVLRNIENVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  P L   + +  + R++ +G  + +L DR     + GPTHEE+ T I +  
Sbjct: 64  DRIGGQELQFPVLLPREPYEATNRWEEFGSSLFKLQDRKGGDYLLGPTHEEMFTVIVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQI+ K+RDE RPR GV+R REF+MKD YSFDLT EG  HSY     +Y
Sbjct: 124 FSSYKDLPILLYQIKEKYRDEARPRAGVIRGREFVMKDLYSFDLTDEGLAHSYALNRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            R++ RLGL+    +A+SG +GG  S EF+   D GE     S         +  T   +
Sbjct: 184 RRVYTRLGLEFAICQAQSGAMGGSASEEFLFPCDIGEDTFVRSPGGYAANAEAVTTAVPE 243

Query: 242 IISLN--SIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            +  +     E    P + T +    K  +  P   R
Sbjct: 244 ALPFDDAPAPEVLPTPDSTTIESLVAKANELYPRKDR 280



 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 97/189 (51%), Gaps = 5/189 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +       D  P+       ARGIE+GHIF  G KY+  +  T    +GK   V MG
Sbjct: 410 GTVEAAEVLPGDPAPDGSGPLTLARGIEIGHIFALGRKYAKALGLTVLDENGKAQVVTMG 469

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VAA+ E++HD KG++WP +VAPF++ ++     D     A EK+   L   
Sbjct: 470 SYGIGVSRLVAAIAENTHDDKGLVWPVNVAPFQVHVLATG-KDPQVFAAAEKLARELEAA 528

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +DD      G +F  A+L+G P  ++VG K +++  VEI+ R  G   D ++E  
Sbjct: 529 GIPVLYDDRAKASAGVKFKDAELMGMPYLLVVG-KGLANGTVEIRDRRAGNTLDCTVEAA 587

Query: 435 INYASHRFS 443
           +        
Sbjct: 588 VEKLLGFIR 596


>gi|21220031|ref|NP_625810.1| threonyl-tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|289772757|ref|ZP_06532135.1| threonyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|22654145|sp|Q9L278|SYT_STRCO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|6822227|emb|CAB70933.1| threonine-tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|289702956|gb|EFD70385.1| threonyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 658

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 68/439 (15%), Positives = 133/439 (30%), Gaps = 36/439 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L + +  Q   G+  + P G      +    R      G   +  
Sbjct: 254 EAEKRDHRKLGSELDLFS-IPEQIGSGLAVFHPKGGIIRRVMEDYSRRRHEEEGYEFVYT 312

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+  SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 313 PHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 372

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R+R F   DA+ +    + S+   +K     L +    G
Sbjct: 373 RLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTREQMSEEL-DKTLTFVLNLLRDYG 431

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +                    +   S +  +    +     +         
Sbjct: 432 LNDFYLELST----------------KDPEKFVGSDEAWEEATETLRQVAEKQNLELVAD 475

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++    F    ++SL  +A       K 
Sbjct: 476 PGGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FNLPERFSLEYTAA---DGAKT 525

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +     G++    AV+    +      P  +AP +   I +           E+  
Sbjct: 526 RPVMIHRALFGSIERFFAVLL---EHYAGAMPPWLAPVQAVGIPVG---DAHVQYLEEFA 579

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A   + G  V  D   +++  +         P  +IVG + +    V  ++R       +
Sbjct: 580 AEARRKGLRVDVDASSDRMQKKIRTQQKQKVPFMIIVGDEDMHGGTVSFRYRDGSQENGI 639

Query: 430 SLEEVINYASHRFSNNRPV 448
             ++ +            V
Sbjct: 640 PRDQALAKLVDVVERRIQV 658


>gi|16078720|ref|NP_389539.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309535|ref|ZP_03591382.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313859|ref|ZP_03595664.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221318782|ref|ZP_03600076.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323054|ref|ZP_03604348.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321315424|ref|YP_004207711.1| prolyl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|11134893|sp|O31755|SYP_BACSU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|2634029|emb|CAB13530.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484212|dbj|BAI85287.1| prolyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
 gi|320021698|gb|ADV96684.1| prolyl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 564

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 109/225 (48%), Positives = 151/225 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DAE  SH+L+LR G I Q++ G+YS++PL  K + N+  I+REE
Sbjct: 1   MRQSLTLIPTLREVPADAEAKSHQLLLRAGFIRQNTSGVYSYMPLAYKVIQNIQQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P LQ A+ W ESGR+ +YG E++RL DR+ +    G THEEV+T + R 
Sbjct: 61  MEKIDAVEMLMPALQQAETWQESGRWYTYGPELMRLKDRHGREFALGATHEEVITSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y KM+ +
Sbjct: 121 EVKSYKRLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHASAESLDETYQKMYEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R G+   P+ A+SG +GG  +HEF+ L+  GE  +  S 
Sbjct: 181 YSNIFARCGINVRPVIADSGAMGGKDTHEFMALSAIGEDTIAYSD 225



 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/191 (36%), Positives = 110/191 (57%), Gaps = 3/191 (1%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A     +D+   K  D  P+ K       GIEVG +F  GT+YS  M+AT+   +G+  
Sbjct: 375 DAQIKEFADLRFIKEGDPSPDGKGTIRFAEGIEVGQVFKLGTRYSEAMNATYLDENGRAQ 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MG YGIG  R ++A+ E  HD KG+IWP SVAP+ + ++ +   +   R+  EK+YA
Sbjct: 435 PMLMGCYGIGVSRTLSAIAEQHHDEKGLIWPKSVAPYDLHILALNMKNDGQRELAEKLYA 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G +V +DD  E+ G +FA +DL+G P+++ VG +   +  VE+K R TG   ++S
Sbjct: 495 DLKAEGYEVLYDDRAERAGVKFADSDLIGLPIRITVGKR-ADEGIVEVKIRQTGESTEIS 553

Query: 431 LEEVINYASHR 441
           ++E+  + S +
Sbjct: 554 VDELSAFISKQ 564


>gi|224002114|ref|XP_002290729.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974151|gb|EED92481.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 791

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 153/439 (34%), Gaps = 37/439 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD    + +  L   M H+ S G   WLP G +  + +   I+E   R G  E+ 
Sbjct: 387 EKAKERDHRRIAQQQDL--VMFHELSAGSAFWLPHGARIYNKLIEFIKEHYWRRGYDEII 444

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + + DLW +SG    Y   M    D   K     P +      +F   I+SYR+LP 
Sbjct: 445 TPNIYNLDLWHQSGHAMHYKDAMF-CFDVEGKEWAMKPMNCPGHCLMFAGKIRSYRDLPI 503

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F    +  R+EL     G+ R R F   DA+ +    +  +            ++   G
Sbjct: 504 RFADFGVLHRNELSGALSGLTRVRRFQQDDAHIYCR-EDQIEDEVLGALDFMKSVYDTFG 562

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           +    +   + P                  +    K+  D    +     D         
Sbjct: 563 MTY-KLELSTRP-----------------AKALGDKELWDRAEAALARAMDTFAGKGGWR 604

Query: 250 E--QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           E     A Y    D+   K+ D++    + +   ++      FG +Y+            
Sbjct: 605 ENPGDGAFYGPKIDI---KVMDAMERVHQCATVQLDFQLPIRFGLEYNTGSKEK---GSE 658

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               V +    +G++  + AV+    +  G  WP  ++P ++ ++ I        D  + 
Sbjct: 659 FARPVMVHRAMLGSVERMFAVL---CEHYGGKWPLWLSPRQVMVVPIHKD---WNDYSQG 712

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  +L   G     D        +   A +  +  Q++VG   V +  V I+ R   +  
Sbjct: 713 VRDKLHAEGFYADVDLSKATFQKKVRNAQVEQYNFQLVVGEAEVKNDTVNIRTRDNKVEG 772

Query: 428 DMSLEEVINYASHRFSNNR 446
           +  ++E+I Y     +  +
Sbjct: 773 EKKVDELIEYLKQLRAEYK 791


>gi|307331523|ref|ZP_07610636.1| prolyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306882840|gb|EFN13913.1| prolyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 573

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 109/263 (41%), Positives = 150/263 (57%), Gaps = 4/263 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S   L  L+E+P DAE ASHKL++R G + + + GI++WLP+G+K L+NV  I+REE 
Sbjct: 9   RLSTTMLKTLREDPADAETASHKLLVRAGYVRRAAAGIWTWLPIGKKVLENVARIVREEM 68

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR+D YG  + R+ DR     + GPTHEE+ T   +  
Sbjct: 69  DAIGAQEVLLPALLPREPYEVSGRWDEYGDLLFRIKDRKGADYLLGPTHEEIFTLTVKDQ 128

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REFLMKD+YSFD T EG   SY     +Y
Sbjct: 129 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFLMKDSYSFDTTDEGLAESYRLHREAY 188

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
            RIF RLGL    + A SG +GG  S EF+  A  GE       +  D+   +E      
Sbjct: 189 QRIFQRLGLDYRIVSAVSGAMGGSASEEFLAPAAAGEDTFVDCPNC-DYAANTEAVTVAV 247

Query: 240 -DDIISLNSIVEQWTAPYAATSD 261
                + +  +E+   P   T +
Sbjct: 248 SPVEGAEHGPLEELDTPDTPTIE 270



 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 62/174 (35%), Positives = 87/174 (50%), Gaps = 6/174 (3%)

Query: 269 DSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P         R IE+GHIF  G KY+        G +GK   V MGSYG+G  R VA
Sbjct: 398 DPCPRCGTGIELDRAIEIGHIFQLGRKYADAFQLDVLGQNGKPARVTMGSYGVGVSRAVA 457

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-G 385
           A+ E +HD  G+ WP  VAP  +    + A   +  +    I  +L   G  V  DD  G
Sbjct: 458 ALAEQTHDESGLCWPREVAPADVH--IVAAGKALQTELALDIAEKLGTAGVRVMVDDRAG 515

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              G +F  A+L+G P  ++VG +   D  VE+K R TG RE++ ++E I+  +
Sbjct: 516 VSPGVKFTDAELIGVPTILVVG-RGAKDGVVELKDRRTGEREELPIDEAISRLT 568


>gi|218563696|ref|NP_001116258.1| threonyl-tRNA synthetase, cytoplasmic isoform 1 [Danio rerio]
 gi|158253608|gb|AAI54372.1| Zgc:92586 protein [Danio rerio]
          Length = 718

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 152/447 (34%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD      +  L     H  S G   +LP G    + +   IR E
Sbjct: 301 KMLKEWEKFQEEAKNRDHRKLGREQDLF--FFHDLSPGSCFFLPKGAYIYNTLIEFIRSE 358

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW  SG +  Y + M       +      P +      +F  
Sbjct: 359 YRKRGFQEVVTPNIYNSKLWQTSGHWQHYSENMFSFEVEKEI-FALKPMNCPGHCLMFDH 417

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 418 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCSMDQIESE-IKGCLD 476

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T   +     +  D          
Sbjct: 477 FLRTVYDVFGFT------------------FKLNLSTRPEKFLGEPEVWDQAEKQLENSL 518

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +D      +     A Y    D+   ++ D++    + +   ++    F    +++L   
Sbjct: 519 NDFGEKWVLNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRFNLTFV 571

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ ++ I     
Sbjct: 572 SH--DGDDKKRPVIIHRAILGSVERMIAILT---ENYGGKWPLWLSPRQVMVVPIGP--- 623

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C +  +++     KVG     D D G  +  +   A L  +   ++VG K  S   V +
Sbjct: 624 TCDEYAQRVQKEFHKVGLMTDVDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKSSDTVNV 683

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   +  + SL + +       ++ 
Sbjct: 684 RTRDNKVHGERSLTDCMERLKQLKASR 710


>gi|331232891|ref|XP_003329107.1| threonyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309308097|gb|EFP84688.1| threonyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 765

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 142/445 (31%), Gaps = 38/445 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD         L     H+ S G   WLP G +  + +    + E  + G  E+
Sbjct: 345 LEEAAKRDHRKIGKDQDLF--FFHELSPGSCFWLPHGTRIYNTLVEFFKSEYRKRGYDEV 402

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + +A LW  SG +++Y   M +L D   +     P +      IF S  +SYR LP
Sbjct: 403 ISPNMYNAKLWQTSGHWENYADSMFKL-DIEKETFGLKPMNCPGHCLIFGSRDRSYRELP 461

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                  +  R+E      G+ R R F   DA+ F  T +        +F     ++  L
Sbjct: 462 IRMADFGVLHRNEASGALSGLTRVRRFCQDDAHHFCTTEQIDSEM-AGIFDLLKTVYGML 520

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G     ++  + P       E   LA+    Q        +F  P E            +
Sbjct: 521 GFTY-KLKLSTRPDNYIGDLEVWNLAEKRLGQAL-----DEFVGPGE----------WDV 564

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATFKGAD 306
                A Y    D+    + D+L    + +   ++      F    +          GA+
Sbjct: 565 DPGDGAFYGPKIDI---TISDALKRRHQCATIQLDFQLPERFKLQYRTDQGGQGAEAGAE 621

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHD-GKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            +   V +    +G++    A++                                 +   
Sbjct: 622 ERKRPVMIHRAIMGSVERFTAILTEHFAGKWPFWLSPRQVMVIPVAAP-------HKAYA 674

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-- 423
           +++  +L   G     D     +  +    ++  +   ++VGS+ +    V ++      
Sbjct: 675 QEVAQKLWDAGLYADADMSDATLPKKIRNGEVASYNFILVVGSEELESRSVNVRSADDVG 734

Query: 424 --GIREDMSLEEVINYASHRFSNNR 446
             G  E +  E  +       +  R
Sbjct: 735 QKGKAEALPFEAALEKLLSLKNERR 759


>gi|295101322|emb|CBK98867.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Faecalibacterium
           prausnitzii L2-6]
          Length = 594

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 148/438 (33%), Gaps = 38/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD      ++ L   M      +G+  +LP G      +   I+E++   G + + 
Sbjct: 189 EARERDHRKIGKEMGLF--MTDDLVGRGLPMFLPAGYTVWQELENYIKEKERARGYLHVM 246

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + + +L+  SG +D Y + M    +   ++ +  P +      I+ +   SYR+LP 
Sbjct: 247 TPCIGTVNLYKTSGHWDHYRENMFPAMEMEGESYVLRPMNCPHHMMIYANRPHSYRDLPM 306

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +I   FR E      G+ R R F   DA+ F    +      +   + +        
Sbjct: 307 RIGEIAHDFRYESSGTLKGIERGRHFCQNDAHLFCTPEQIKSEVADVCNLIFETYKDFNI 366

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                + +   P      H+                   +    +      ++    +  
Sbjct: 367 TDYRCVLSLRDPADKKKYHD--------------DDAMWNHAENALREVLTELGIHFTEE 412

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    DV    +  ++     +S   ++    F    K+      T+   DG +
Sbjct: 413 IGEAAFYGPKLDV---NVKPAVGAEYTLSTCQLD----FCLPAKF----HLTYVDKDGTE 461

Query: 310 HYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
               +     +G++    A +     GK   W   V    + +       +   +  E I
Sbjct: 462 KTPVVLHRAILGSLDRFMAYLIEETKGKFPTWLAPVQVKVLPV------SEKTLEYSEAI 515

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             +L + G  V  DD  ++IG +   A  +   P  +++G+K      V ++ R  G   
Sbjct: 516 TEKLVEAGVRVALDDDNQKIGYKIRAAQQVDRVPYMLVLGAKEAEAGNVSVRDRK-GETT 574

Query: 428 DMSLEEVINYASHRFSNN 445
            M ++E I   +    N 
Sbjct: 575 TMEVDEFIAKVTSEIKNR 592


>gi|122891384|emb|CAM13348.1| novel prtoein similar to vertebrate threonyl-tRNA synthetase (TARS,
           zgc:92586) [Danio rerio]
          Length = 718

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 152/447 (34%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD      +  L     H  S G   +LP G    + +   IR E
Sbjct: 301 KMLKEWEKFQEEAKNRDHRKLGREQDLF--FFHDLSPGSCFFLPKGAYIYNTLIEFIRSE 358

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW  SG +  Y + M       +      P +      +F  
Sbjct: 359 YRKRGFQEVVTPNIYNSKLWQTSGHWQHYSENMFSFEVEKEI-FALKPMNCPGHCLMFDH 417

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 418 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCSMDQIESE-IKGCLD 476

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T   +     +  D          
Sbjct: 477 FLRTVYDVFGFT------------------FKLNLSTRPEKFLGEPEVWDQAEKQLENSL 518

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +D      +     A Y    D+   ++ D++    + +   ++    F    +++L   
Sbjct: 519 NDFGEKWVLNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRFNLTFV 571

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ ++ I     
Sbjct: 572 SH--DGDDKKRPVIIHRAILGSVERMIAILT---ENYGGKWPLWLSPRQVMVVPIGP--- 623

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C +  +++     KVG     D D G  +  +   A L  +   ++VG K  S   V +
Sbjct: 624 TCDEYAQRVQKEFHKVGLMTDVDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKSSDTVNV 683

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   +  + SL + +       ++ 
Sbjct: 684 RTRDNKVHGERSLTDCMERLKQLKASR 710


>gi|290957026|ref|YP_003488208.1| prolyl tRNA synthetase [Streptomyces scabiei 87.22]
 gi|260646552|emb|CBG69649.1| prolyl tRNA synthetase [Streptomyces scabiei 87.22]
          Length = 567

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 107/263 (40%), Positives = 149/263 (56%), Gaps = 4/263 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+++P DAE+ SHKL++R G + + + G+++WLPLG+K L NV  I+REE 
Sbjct: 8   RMSQLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGVWTWLPLGKKVLANVERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR+D YG E+ RL DR     + GPTHEE+ T I +  
Sbjct: 68  DAIGAQEVLLPALLPKEPYEATGRWDEYGPELFRLKDRKGGDYLLGPTHEEIFTLIVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ KFRDE RPR G++R REFLMKD+YSFD   EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQTKFRDEARPRAGILRGREFLMKDSYSFDTEDEGLAQSYALHRAAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            ++F RLGL      A +G +GG  S EF+  A  GE   F      DF   +E   F+ 
Sbjct: 188 QKVFERLGLDYRICAATAGAMGGSKSEEFLAPAGAGE-DTFADCPACDFAANTEAITFEL 246

Query: 242 I---ISLNSIVEQWTAPYAATSD 261
                     +E+   P   T +
Sbjct: 247 KPVDAGDTPALEEIPTPDTPTIE 269



 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/197 (31%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFK 303
            ++V        A  DV   +  D  P         R IE+GHIF  G KY+  +     
Sbjct: 373 KNVVAGRDFEVGAYVDVVVVQEGDPCPNCGTGLKLDRAIEIGHIFQLGRKYADALKLDVL 432

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           G  GK   V MGSYGIG  R VAA+ E S D KG+ WP  VAP  +    + A   +  +
Sbjct: 433 GQHGKPVRVTMGSYGIGVSRAVAALAEQSADDKGLCWPAEVAPADVH--VVAAGKALQTE 490

Query: 364 ACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +  +L   G  V  DD  G   G +F  ++L+G P  ++ G +      +E+K R 
Sbjct: 491 LALDVSEKLRAAGLRVLVDDRAGVSPGVKFTDSELIGVPKILVAGRRSAE-GVLELKDRR 549

Query: 423 TGIREDMSLEEVINYAS 439
           TG RE+++++E I   +
Sbjct: 550 TGEREELTVDEAIARLT 566


>gi|256788869|ref|ZP_05527300.1| threonyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 653

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 68/439 (15%), Positives = 133/439 (30%), Gaps = 36/439 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L + +  Q   G+  + P G      +    R      G   +  
Sbjct: 249 EAEKRDHRKLGSELDLFS-IPEQIGSGLAVFHPKGGIIRRVMEDYSRRRHEEEGYEFVYT 307

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           P      L+  SG  D Y   M               P +  +   IF +  +SYR LP 
Sbjct: 308 PHATKGKLFETSGHLDWYADGMYPPMQLDEGVDYYLKPMNCPMHNLIFDARGRSYRELPL 367

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             ++    +R E      G+ R+R F   DA+ +    + S+   +K     L +    G
Sbjct: 368 RLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTREQMSEEL-DKTLTFVLNLLRDYG 426

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +                    +   S +  +    +     +         
Sbjct: 427 LNDFYLELST----------------KDPEKFVGSDEAWEEATETLRQVAEKQNLELVAD 470

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++    F    ++SL  +A       K 
Sbjct: 471 PGGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FNLPERFSLEYTAA---DGAKT 520

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +     G++    AV+    +      P  +AP +   I +           E+  
Sbjct: 521 RPVMIHRALFGSIERFFAVLL---EHYAGAMPPWLAPVQAVGIPVG---DAHVQYLEEFA 574

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A   + G  V  D   +++  +         P  +IVG + +    V  ++R       +
Sbjct: 575 AEARRKGLRVDVDASSDRMQKKIRTQQKQKVPFMIIVGDEDMHGGTVSFRYRDGSQENGI 634

Query: 430 SLEEVINYASHRFSNNRPV 448
             ++ +            V
Sbjct: 635 PRDQALAKLVDVVERRIQV 653


>gi|75908999|ref|YP_323295.1| threonyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
 gi|75702724|gb|ABA22400.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Anabaena
           variabilis ATCC 29413]
          Length = 615

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 152/442 (34%), Gaps = 39/442 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L      Q   G+  W P G      +   +++EQ + G + + 
Sbjct: 203 EEALRRDHRKLGKELGLFI-FSEQVGPGLPLWTPKGTLLRSTLEQFLQQEQLKRGYLPVV 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  L   ++ A       +  P +      I++S ++S
Sbjct: 262 TPHIARVDLFKTSGHWQKYKEDMFPLMAEDEAAAAIEQGFVLKPMNCPFHIQIYKSELRS 321

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    +    +R E     G +        D     +TPE     +  +    L +
Sbjct: 322 YRELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPEQLDSEFLNVVDLILSV 381

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F  L LK+   R                  D    +   S +  +    +     + +  
Sbjct: 382 FKSLQLKNFKARLS--------------FRDPASDKYIGSDEVWNKAEGAIRRAVEQLGM 427

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +       A Y    D       D+L    ++    ++                  +  
Sbjct: 428 EHFEGIGEAAFYGPKLDFI---FSDALEREWQLGTVQVDYNLP--------ERFDLEYVA 476

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +     G++  +  ++    +     +P  +AP +  L+ +    +   D
Sbjct: 477 EDGTRKRPVMIHRAPFGSLERLIGILI---EEYAGDFPLWLAPVQARLLPVG---EAQLD 530

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + + A+L  +G     D  G+++G     A+    P+  +VG+K V  + + I+ R +
Sbjct: 531 FTKDVVAKLRSLGIRAEVDTSGDRLGKLIRNAEKDKIPVMGVVGAKEVETNSLSIRTRAS 590

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    + ++EV+       +N 
Sbjct: 591 GELGAIPVDEVVQKMKDAIANY 612


>gi|118472270|ref|YP_886958.1| prolyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
 gi|302595855|sp|A0QVM0|SYP_MYCS2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118173557|gb|ABK74453.1| prolyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
          Length = 585

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 96/241 (39%), Positives = 143/241 (59%), Gaps = 1/241 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G +     GIYSWLPLG + L  +  ++R E 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYVRAVGPGIYSWLPLGLRVLRKIENVVRSEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+ +P L     +  + R+  YG  + RL DR +   + GPTHEE+ T   +  
Sbjct: 64  NAIGAQEILLPALLPRGPYETTNRWTEYGDTLFRLQDRRNNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFD+  +G K++Y +   +Y
Sbjct: 124 YSSYKDFPVILYQIQTKYRDEARPRAGILRGREFVMKDSYSFDVDDDGLKNAYYQHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFD 240
            RIF RLG++ + + A SG +GG  S EF+  ++ GE   V C +      + +  T   
Sbjct: 184 QRIFARLGVRYVIVSAVSGAMGGSASEEFLAESEVGEDTFVRCVESGYAANVEAVITRAP 243

Query: 241 D 241
           +
Sbjct: 244 E 244



 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 67/188 (35%), Positives = 98/188 (52%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+   V    RGIE+GHIF  G KY+   SA   G DGK   + MG
Sbjct: 399 GTIEAAEVRDGDPSPDGAGVLTSARGIEIGHIFQLGRKYTDAFSADVLGEDGKPLRLTMG 458

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA + E  HD  G+ WP SVAPF + ++     D   R    ++ A L ++
Sbjct: 459 SYGIGVSRLVAVIAEQQHDQLGLRWPSSVAPFDVHVVVAN-KDAGARAGAAELVADLDRL 517

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V +DD     G +F  A+LLG P  V+VG +  +D  VE+++R TG   +++ +   
Sbjct: 518 GHEVLFDDRQASPGVKFKDAELLGMPWIVVVG-RGWADGVVELRNRFTGETREIAADGAA 576

Query: 436 NYASHRFS 443
              S   +
Sbjct: 577 AEISSVLA 584


>gi|308177541|ref|YP_003916947.1| threonine--tRNA ligase [Arthrobacter arilaitensis Re117]
 gi|307745004|emb|CBT75976.1| threonine--tRNA ligase [Arthrobacter arilaitensis Re117]
          Length = 671

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 63/456 (13%), Positives = 135/456 (29%), Gaps = 48/456 (10%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L +   RD      +L L +    +   G+  + P G      +   +R+    
Sbjct: 245 KAYQERLAEAERRDHRKLGAELDLFS-FPDELGSGLPVFHPKGGIIKREMEDYVRDRHVE 303

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR------------LADRNDKAMIYGPTHE 111
            G   +  P +    L+  SG    Y   M                 +  +       + 
Sbjct: 304 EGFQYVGTPHISKDGLFHTSGHLPYYADTMFPALHIDEERDEDGNITKQGQEYRLKAMNC 363

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IFR   +SYR LP   ++    +R E      G+ R R F   D++S+    +  
Sbjct: 364 PMHNLIFRGRGRSYRELPLRLFEFGHVYRYEKSGVVHGLTRVRGFSQDDSHSYVTKEQAP 423

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    G+    +   +     D                  S +  + 
Sbjct: 424 AE-VEHLLNFMLSLLRDFGMDDFYLELSTRDPESDKF--------------IGSDEQWNE 468

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                     +            A Y       + +  D++    ++     +      F
Sbjct: 469 ATAVLERVATESGVELVADPGGAAFYGPKI---SVQAKDAIGRTWQMGTVQYDFNQPARF 525

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           G          ++ ADG       + +   G++     V+    +     +P  ++P ++
Sbjct: 526 G--------LEYQAADGTRQEPVMIHAAKFGSIERFLGVLT---EHYAGAFPAWLSPVQV 574

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
             I +    +   D   ++ A+L   G  V  DD  ++   +   A     P  +I G +
Sbjct: 575 RAIPVA---EAFNDYLGEVVAKLKAAGVRVELDDSSDRFPKKIRNASKDKIPFVLIAGGE 631

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
               + V  + R       + +++ +        + 
Sbjct: 632 DADANAVSFRFRDGSQENQVPVDDAVARIVEAIKSR 667


>gi|322379034|ref|ZP_08053437.1| threonyl-tRNA synthetase [Helicobacter suis HS1]
 gi|322380800|ref|ZP_08054906.1| threonyl-tRNA synthetase [Helicobacter suis HS5]
 gi|321146804|gb|EFX41598.1| threonyl-tRNA synthetase [Helicobacter suis HS5]
 gi|321148526|gb|EFX43023.1| threonyl-tRNA synthetase [Helicobacter suis HS1]
          Length = 601

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 147/444 (33%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      +L L          G+  WLP G +    +  ++ +   
Sbjct: 193 LKEYLYQLEEAKKRDHRKLGQELGLF-CFDENLGAGLPIWLPNGMRLRVRLENLLSKALL 251

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  + LW +SG Y +Y + M      ++      P +      ++   +
Sbjct: 252 QYGYEPVRGPEILKSSLWQKSGHYQNYKENM-YFTTIDEVEYGIKPMNCVGHIKVYEHAL 310

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP  FY+  +  R E      G++R REF   DA+ F               +S 
Sbjct: 311 RSYRELPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCR-----FDQIKTEVLSI 365

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L                +  + G    E+ +   T   +        +    +     ++
Sbjct: 366 LEF--------------TKKVMGVFGFEYEMELSTKPAKYIGEDHIWEQATNALKQALEE 411

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I     A Y    D+   K+ D++    +     +++     F          +
Sbjct: 412 HNISFGIDAGGGAFYGPKIDI---KITDAIRRKWQCGTVQVDMNLPARF--------ELS 460

Query: 302 FKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    G  +  V +    +G+     A++   + G    +           I +      
Sbjct: 461 YTNETGNLEQPVMIHRAILGSFERFIAILTEHYSGNYPFF------IAPVQIALVPVSMD 514

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  ++IY +L+K G  V   D  E +  +    +    P  V+VG + V+   + I+ 
Sbjct: 515 QLEYAQEIYHKLNKRGFFVCMADKNETLSKRIRSLEKQKIPFIVVVGKEEVAQGSLAIRD 574

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R  G +  M  EE       +   
Sbjct: 575 RALGKQYTMLQEEFFQSMEAKMRE 598


>gi|147899539|ref|NP_001087812.1| threonyl-tRNA synthetase [Xenopus laevis]
 gi|51895835|gb|AAH81263.1| MGC86352 protein [Xenopus laevis]
          Length = 721

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 155/449 (34%), Gaps = 44/449 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD      +  L     H+ S G   +LP G    + +   IR+E
Sbjct: 304 KMLKEWEKFQEEAKNRDHRKLGKEQELF--FFHELSPGSCFFLPKGAYIYNQLIGFIRQE 361

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW  SG +  Y + M       +      P +      +F  
Sbjct: 362 YRKRGFQEVVTPNVYNSKLWQTSGHWQHYSENMFSFEVEKEI-FALKPMNCPGHCLMFDH 420

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 421 RPRSWRELPMRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQ-IEEEIKSCLD 479

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +++  G         + P       E    A+                        
Sbjct: 480 FLRSVYNVFGFTFKLN-LSTRPEKFLGDIEVWNQAEK-----------------QLENSL 521

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 522 NEFGEKWVLNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 570

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 571 LTYVSHDGDDKKRPVIIHRAILGSVERMIAILT---ENFGGKWPLWLSPQQVMVVPVGP- 626

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +++  +  + G     D D G  +  +   A L  +   ++VG K  +   V
Sbjct: 627 --TCDEYAQQVREQFHRAGLMTDVDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASETV 684

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I+ R   +  + ++ E I        + 
Sbjct: 685 NIRTRDNKVHGERTVTETIQRLLQLKESR 713


>gi|320167861|gb|EFW44760.1| threonyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 726

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 68/439 (15%), Positives = 140/439 (31%), Gaps = 44/439 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L+   RD      +  L     H+ S G   +LP G +  + +   IR E    G  E+ 
Sbjct: 309 LEAAKRDHRKLGTEQSLF--FFHELSPGSCFFLPHGTRIYNTLMEFIRSEYWARGFTEVI 366

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + ++ LW +SG +  Y + M    D   +     P +      +F    +S++ LP 
Sbjct: 367 TPNMYNSKLWQQSGHWQHYAENMFSF-DIEKEKFALKPMNCPGHCLMFDQAFRSHKELPI 425

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F    +  R+E      G+ R R F   DA+ F    + +         + L     + 
Sbjct: 426 RFADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCKPSDIANE-----IDNALAFLKAVY 480

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F +   T            D          +   +   + 
Sbjct: 481 TVFGFT--------------FQLKLSTRPEGFLGDIALWDKAEKQLEESLNKFGAPWKLN 526

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L  + + +   ++    F    ++       ++  DG +
Sbjct: 527 PGDGAFYGPKIDI---TIMDALRRSHQCATIQLD----FQLPIRF----GLKYQAPDGTE 575

Query: 310 HYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               +    I     R++A + E+             A             + C D   +
Sbjct: 576 QTPVIIHRAILGSVERMIAILTENFAGKWPFWLSPRQALVIAV-------SKDCNDYAHE 628

Query: 368 IYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +  +L   G  V +D    E +  +   A L  +   ++VG++        ++ R   + 
Sbjct: 629 VQKQLHDAGFHVDYDLWPDETLNKKVRNAQLAQYNFILVVGARERESRSANVRTRDNKVH 688

Query: 427 EDMSLEEVINYASHRFSNN 445
            + ++ ++I   +    + 
Sbjct: 689 GERTIPQLIAEFTELAKSR 707


>gi|313112983|ref|ZP_07798626.1| threonyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624703|gb|EFQ08015.1| threonyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 594

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 153/439 (34%), Gaps = 40/439 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD      ++ L   M      +G+  +LP G      +   I+E++   G + + 
Sbjct: 189 EARERDHRKIGKEMGLF--MTDDLVGRGLPMFLPAGYTVWQELENYIKEKERARGYLHVM 246

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + + +L+  SG +D Y + M    +   ++ +  P +      I+ +   SYR+LP 
Sbjct: 247 TPCIGTVNLYKTSGHWDHYRENMFPAMEMEGESYVLRPMNCPHHMMIYANRPHSYRDLPM 306

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +I   FR E      G+ R R F   DA+ F    +        +      ++    
Sbjct: 307 RIGEIAHDFRYESSGTLKGIERGRHFCQNDAHLFCTPEQIKSE-VANVCDLIFEVYKDFN 365

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIISLNSI 248
           +                        D  + + +   D   +    +      ++    + 
Sbjct: 366 ITDYRCVLSLR--------------DPADKKKYHDDDAMWNHAEQALREVLTELGIHFTE 411

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    DV    +  ++     +S   ++    F    K+      T+   DG 
Sbjct: 412 EIGEAAFYGPKLDV---NVKPAVGAEYTLSTCQLD----FCLPAKF----HLTYVDKDGT 460

Query: 309 DHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +    +     +G++    A +    +     +P  +AP ++ ++ +    +   D  E 
Sbjct: 461 EKTPVVLHRAILGSLDRFMAYLI---EETKGKFPTWLAPTQVKVLPV---SEKTLDYAEG 514

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +  +L + G  V  DD  ++IG +   A  +   P  +++G+K      + ++ R  G  
Sbjct: 515 VTEKLVEAGVRVVLDDDNQKIGYKIREAQQVDRVPYMLVLGAKEAEAGNISVRDRK-GET 573

Query: 427 EDMSLEEVINYASHRFSNN 445
             M L+  I   +    N 
Sbjct: 574 TTMELDAFIAKVTAEIRNR 592


>gi|73951029|ref|XP_857141.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 2
           [Canis familiaris]
          Length = 799

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 153/447 (34%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 382 KMMKTWEKFQEEAKNRDHRKVGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLMDFIREE 439

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    E+  P + ++ LW  SG +  Y + M    D         P +      +F  
Sbjct: 440 YHRRNFTEVLSPNMFNSKLWETSGHWQHYSENMFTF-DIEKDTFALKPMNCPGHCLMFAH 498

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P       +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 499 RPRSWREMPVRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLQ 557

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  D          
Sbjct: 558 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEVELWDEAEKQLQNSL 599

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 600 VEFGKPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 652

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K + V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 653 SK--DGDDKRNPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP--- 704

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C     ++ +   + G     D D    +  +   A L  +   ++VG K  +++ V +
Sbjct: 705 TCEKYALQVSSAFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKTNNAVNV 764

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   I  ++S+   I+   +   + 
Sbjct: 765 RTRDNKIHGEISVTSAIHKLKNLKKSR 791


>gi|282916523|ref|ZP_06324281.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283770327|ref|ZP_06343219.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|282319010|gb|EFB49362.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283460474|gb|EFC07564.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
          Length = 567

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK   D+    E  
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSK-ESDYAANIEKA 236



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 118/231 (51%), Gaps = 3/231 (1%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENK 275
            E +++      D        + D    +N  V   +            E    S     
Sbjct: 339 KEIKIYADNFVQDLNNLVVGANEDGYHLINVNVGRDFNVDEYGDFRFILEGEKLSDGSGV 398

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD 
Sbjct: 399 AHFAEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDD 458

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GI+WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  A
Sbjct: 459 NGIVWPKSVTPFDLHLISINPKKDDQRELADALYAEFNTK-FDVLYDDRQERAGVKFNDA 517

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 518 DLIGLPLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|239944683|ref|ZP_04696620.1| prolyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|239991146|ref|ZP_04711810.1| prolyl-tRNA synthetase [Streptomyces roseosporus NRRL 11379]
 gi|291448145|ref|ZP_06587535.1| prolyl-tRNA synthetase 1 [Streptomyces roseosporus NRRL 15998]
 gi|291351092|gb|EFE77996.1| prolyl-tRNA synthetase 1 [Streptomyces roseosporus NRRL 15998]
          Length = 567

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 111/269 (41%), Positives = 156/269 (57%), Gaps = 4/269 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + +++ GI++WLPLG+K LDN++ ++REE 
Sbjct: 6   RMSRLMIKTLRDDPADAETLSHKLLVRAGYVRRNAAGIWTWLPLGKKVLDNISNVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 66  DAIGAQEVLLPALLPKEPYEASGRWEEYGDLLFRLKDRKGGDYLLGPTHEEIFTQTVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG  HSY     +Y
Sbjct: 126 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTTDEGLAHSYALHRAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
           ++IF RLGL    + A SG +GG  S EF+  A  GE   F      D+   +E   F  
Sbjct: 186 IKIFERLGLDHRIVSAVSGAMGGSASEEFLAPAAAGE-DTFADCPNCDYAANTEAVTFAL 244

Query: 240 -DDIISLNSIVEQWTAPYAATSDVHNEKL 267
                S +  VE+   P   T +   E L
Sbjct: 245 APVDGSAHGAVEELDTPDTPTIETLAEHL 273



 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 6/186 (3%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           DV   +  D  P+     V  R IE+GHIF  G KY+        G  GK   V MGSYG
Sbjct: 385 DVVVVEEGDPCPKCGTGLVLDRAIEIGHIFQLGRKYADTFQLDVLGQQGKPVRVTMGSYG 444

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R VAA+ E + D KG+ WP  +AP  +    + A   +  +    +  +L+  G  
Sbjct: 445 IGVSRAVAALTEQTADDKGLCWPREIAPADVH--VVAAGKALQTELALDVSEKLNAAGLR 502

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V  DD  G   G +F  ++L+G P  ++ G +  +D  +E+K R TG RE+++++E I  
Sbjct: 503 VLVDDRAGVSPGVKFTDSELIGVPKILVAGRRS-ADGVLELKDRRTGEREELTVDEAIAR 561

Query: 438 ASHRFS 443
            +   +
Sbjct: 562 LTADLA 567


>gi|282927605|ref|ZP_06335221.1| prolyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|282590608|gb|EFB95685.1| prolyl-tRNA synthetase [Staphylococcus aureus A10102]
          Length = 567

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 119/294 (40%), Positives = 176/294 (59%), Gaps = 5/294 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK   D+    E  +  
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSK-ESDYAANIEKAEVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
              +        T       +  N K    L +        I    IF    +Y
Sbjct: 240 YEPNHKHS----TVQPLEKIETPNVKTAQELADFLGRPVDEIVKTMIFKVDDEY 289



 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 110/188 (58%), Gaps = 4/188 (2%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D       + L +   V+    GIEVG +F  GTKYS  M+ATF    GK   + MG YG
Sbjct: 382 DFRFILEGEKLSDGSGVAHFAEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R ++A++E +HD  GI+WP SV PF + LI+I       R+  + +YA  +    D
Sbjct: 442 IGISRTLSAIVEQNHDDNGIVWPKSVTPFDLHLISINPKKDDQRELADALYAEFNTK-FD 500

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V +DD  E+ G +F  ADL+G PL+++VG +  S+  VE+K RLTG  E++ +++++   
Sbjct: 501 VLYDDRQERAGVKFNDADLIGLPLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVI 559

Query: 439 SHRFSNNR 446
           ++++ N +
Sbjct: 560 TNKYDNLK 567


>gi|220905829|ref|YP_002481140.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7425]
 gi|219862440|gb|ACL42779.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7425]
          Length = 610

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 69/448 (15%), Positives = 140/448 (31%), Gaps = 42/448 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +    +E  R D      +L L          G+  W P G      +   +++EQ + G
Sbjct: 193 YQRRKEEAQRRDHRKLGKELGLFI-FSDLVGPGLPLWTPKGTILRSTLEDFLKQEQLKRG 251

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFR 119
              +  P +   DL+  SG +  Y ++M  L   +++        +  P +      I++
Sbjct: 252 YQPVVSPHIARVDLFKTSGHWQKYKEDMFPLMSEDEQERQSEVGFVMKPMNCPFHIQIYK 311

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           S ++SYR+LP    +    +R E     G +        D     +TP      + K+  
Sbjct: 312 SELRSYRDLPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPSQLDDEFLKVVD 371

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F +L LK+   R                  D    +   S    +    +     
Sbjct: 372 LILSVFAQLQLKNFKARLS--------------FRDPNSDKYIGSDQAWEKAQTAIRQAV 417

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           + +   +       A Y    D       D+L    ++    ++                
Sbjct: 418 ETLGMDHFEGIGEAAFYGPKLDFI---FQDALEREWQLGTVQVDYNLP--------ERFE 466

Query: 300 ATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             +   DG      M          R++  +IE       +                   
Sbjct: 467 LEYVAEDGSRQRPVMIHRAPFGSLERLIGILIEEYAGDFPLWLAPEQVRLLTVG------ 520

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                    ++  ++  +G  V  D  G+++  +   A+    P+  ++G+K V    + 
Sbjct: 521 -DDQMPFARQVAEQMQALGVRVVIDTSGDRLPKKIRNAEKEKIPVMAVIGAKEVEADSLS 579

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+ R  G    +S+ EV+   +    + 
Sbjct: 580 IRTRAAGELGVISVPEVVERLAKAIHDR 607


>gi|110004597|emb|CAK98934.1| probable threonyl-trna synthetase 1 protein [Spiroplasma citri]
          Length = 638

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 60/443 (13%), Positives = 135/443 (30%), Gaps = 33/443 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +      +   RD       L + T        G+  WLP G      +   IRE++   
Sbjct: 226 QVLFAYEERRERDHRKIGKDLEIFT-FDKLVGPGLPIWLPNGMALKKVLQEYIREKEWEY 284

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              E+  P + +++++  SG +D Y + M     +N++  +  P        ++    +S
Sbjct: 285 DFTEVDTPVIGTSEMYKISGHWDHYQENMFAPMAQNNEISVLRPMACPHHIAVYNYKQRS 344

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    +  +  R E       +     +        L  +  K  + + F     +
Sbjct: 345 YRELPLRIAEHAILHRYETSGSLTGLERVRMMQLTDSHIFLRHDQLKEEFKRCFKLINEV 404

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK-DFMDFPIPSENTDFDDII 243
              L +                        D    + +       +          DD+ 
Sbjct: 405 LTDLKITVDYYSLSLR--------------DPANKEKYYDDNQMWNHAEQMLQEALDDLK 450

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                +    A Y    D+   ++  +L     VS    +    F          + ++ 
Sbjct: 451 IPYVPMIGEAAFYGPKLDI---QIKTALNHEITVSTLQFD----FLLP----KKFNLSYI 499

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              G     V +    IG      A++     G    W          ++ I  +++   
Sbjct: 500 DETGAKAMPVMLHRGLIGTYERFIAILLEQTKGVLPFWLA-----PKQIVIIPVNNEHHL 554

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +++ +  K+      DD  E++  +   A +   P Q+++G +      +  +   
Sbjct: 555 EYVNELHQQFKKLKLRTTIDDRDERLSYKIREAQVAKIPYQIVIGDQERDKKMITYRIYG 614

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
              +   + ++ I   + +  N 
Sbjct: 615 QEDQITTTFDKFIILINEQIINK 637


>gi|49486102|ref|YP_043323.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|81175024|sp|Q6G9V0|SYP_STAAS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|49244545|emb|CAG42974.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 567

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK   D+    E  
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSK-ESDYAANIEKA 236



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 118/231 (51%), Gaps = 3/231 (1%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENK 275
            E +++      D        + D    +N  V   +            E    S     
Sbjct: 339 KEIKIYADNFVQDLNNLVVGANEDGYHLINVNVGRDFNVDEYGDFRFILEGEKLSDGSGV 398

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD 
Sbjct: 399 AHFAEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDD 458

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GI+WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  A
Sbjct: 459 NGIVWPKSVTPFDLHLISINPKKDDQRELADALYAEFNTK-FDVLYDDRQERAGVKFNDA 517

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 518 DLIGLPLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|298694555|gb|ADI97777.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED133]
          Length = 567

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 115/282 (40%), Positives = 174/282 (61%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK   D+    E  +  
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSK-ESDYAANIEKAEVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              +      Q        +    ++L D L        + +
Sbjct: 240 YEPNHKHTTVQSLEKIETPNVKTAQELADFLGRPVDEIVKTM 281



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 118/231 (51%), Gaps = 3/231 (1%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENK 275
            E +++      D        + D    +N  V   +            E    S     
Sbjct: 339 KEIKIYADNFVQDLNNLVVGANEDGYHLINVNVGRDFNVDEYGDFRFILEGEKLSDGSGV 398

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD 
Sbjct: 399 AHFAEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDD 458

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GI+WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  A
Sbjct: 459 NGIVWPKSVTPFDLHLISINPKKDDQRELADALYAEFNTK-FDVLYDDRQERAGVKFNDA 517

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 518 DLIGLPLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|258452562|ref|ZP_05700568.1| prolyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|257859780|gb|EEV82622.1| prolyl-tRNA synthetase [Staphylococcus aureus A5948]
          Length = 567

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK   D+    E  
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSK-ESDYAANIEKA 236



 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 118/231 (51%), Gaps = 3/231 (1%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENK 275
            E +++      D        + D    +N  V   +            E    S     
Sbjct: 339 KEIKIYADNFVQDLNNLVVGANEDGYHLINVNVGRDFNVDEYGDFRFILEGEKLSDGSGV 398

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD 
Sbjct: 399 AHFAEGIEVGQVFKLGTKYSESMNATFLDNQGKAQSLIMGCYGIGISRTLSAIVEQNHDD 458

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GI+WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  A
Sbjct: 459 NGIVWPKSVTPFDLHLISINPKKDDQRELADALYAEFNTK-FDVLYDDRQERAGVKFNDA 517

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 518 DLIGLPLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|332670041|ref|YP_004453049.1| prolyl-tRNA synthetase [Cellulomonas fimi ATCC 484]
 gi|332339079|gb|AEE45662.1| prolyl-tRNA synthetase [Cellulomonas fimi ATCC 484]
          Length = 597

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 106/277 (38%), Positives = 147/277 (53%), Gaps = 2/277 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASHKL++R G I + + GIY+WLPLG + L  V A++REE 
Sbjct: 4   RLSTLFVRTLREDPADAEVASHKLLVRAGYIRRAAPGIYTWLPLGLRVLAKVEAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+  P L   + +  +GR+  YG  + RL DR     +  PTHEE+ T + +  
Sbjct: 64  AAAGAQEVHFPALLPKEPYEATGRWTEYGPNIFRLKDRKGGDYLLAPTHEELFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T +QIQ K+RDE RPR G++R REF+MKDAYSFD+   G   SY     +Y
Sbjct: 124 YSSYKDLPLTLFQIQTKYRDEARPRAGLIRGREFVMKDAYSFDVDDAGLDASYAAQRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            R+F RLGL+ + + A SG +GG  S EF+     GE     S       + +  T    
Sbjct: 184 QRVFERLGLEYVIVSATSGAMGGSRSEEFLTPTAIGEDTFVRSAGGYAANVEAVTTVAPP 243

Query: 242 IISLNSIVEQ--WTAPYAATSDVHNEKLFDSLPENKR 276
            +  +          P   T D       D  P   R
Sbjct: 244 ALDWSDAPAAHVEDTPDTPTIDTLVTVSNDRFPRADR 280



 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 103/190 (54%), Gaps = 5/190 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+       ARGIE+GHIF  G KY+  +  T    +GK   V MG
Sbjct: 406 GTVEAAEVRAGDPAPDGSGPLELARGIEIGHIFQLGRKYAQALGLTVLDQNGKSQVVTMG 465

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+AA+ E++HD +G+ WP  VAP  + ++     D    +A E + A+L   
Sbjct: 466 SYGIGVTRVLAALAEANHDDRGLAWPAHVAPAHVHVVATG-KDASVFEAAEDVAAQLVAR 524

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD      G +FA A+L G PL V+VG + +++  VE++ R+ G    + + +V
Sbjct: 525 GVEVLYDDRPKVSPGVKFADAELFGVPLVVVVG-RGLAEGLVEVRPRVGGEPVQVPVADV 583

Query: 435 INYASHRFSN 444
           + + + R + 
Sbjct: 584 VEHVAGRVAE 593


>gi|57651833|ref|YP_186139.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|81175020|sp|Q5HGG8|SYP_STAAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|57286019|gb|AAW38113.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
          Length = 567

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK   D+    E  
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSK-ESDYAANIEKA 236



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 118/231 (51%), Gaps = 3/231 (1%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENK 275
            E +++      D        + D    +N  V   +            E    S     
Sbjct: 339 KEIKIYADNFVQDLNNLVVGANEDGYHLINVNVGRDFNVDEYGDFRFILEGEKLSDGSGA 398

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD 
Sbjct: 399 AHFAEGIEVGQVFKLGTKYSESMNATFLDNQGKAQSLIMGCYGIGISRTLSAIVEQNHDD 458

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GI+WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  A
Sbjct: 459 NGIVWPKSVTPFDLHLISINPKKDDQRELADALYAEFNTK-FDVLYDDRQERAGVKFNDA 517

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 518 DLIGLPLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|87161679|ref|YP_493853.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194973|ref|YP_499773.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151221385|ref|YP_001332207.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509429|ref|YP_001575088.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142497|ref|ZP_03566990.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|262048155|ref|ZP_06021042.1| prolyl-tRNA synthetase [Staphylococcus aureus D30]
 gi|262051325|ref|ZP_06023548.1| prolyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|282920507|ref|ZP_06328228.1| prolyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|284024256|ref|ZP_06378654.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132]
 gi|294848259|ref|ZP_06789006.1| prolyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|304381173|ref|ZP_07363826.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|114152254|sp|Q2FHH5|SYP_STAA3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152255|sp|Q2G1Z4|SYP_STAA8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|172049021|sp|A6QGG3|SYP_STAAE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189083518|sp|A8Z3U3|SYP_STAAT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|87127653|gb|ABD22167.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202531|gb|ABD30341.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150374185|dbj|BAF67445.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368238|gb|ABX29209.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|259160700|gb|EEW45721.1| prolyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|259163721|gb|EEW48276.1| prolyl-tRNA synthetase [Staphylococcus aureus D30]
 gi|282594169|gb|EFB99156.1| prolyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|294825059|gb|EFG41481.1| prolyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|302751086|gb|ADL65263.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340156|gb|EFM06097.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315198505|gb|EFU28834.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140920|gb|EFW32767.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144364|gb|EFW36130.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329313933|gb|AEB88346.1| Prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus T0131]
 gi|329727831|gb|EGG64282.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus 21189]
          Length = 567

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK   D+    E  
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSK-ESDYAANIEKA 236



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 118/231 (51%), Gaps = 3/231 (1%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENK 275
            E +++      D        + D    +N  V   +            E    S     
Sbjct: 339 KEIKIYADNFVQDLNNLVVGANEDGYHLINVNVGRDFNVDEYGDFRFILEGEKLSDGSGV 398

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD 
Sbjct: 399 AHFAEGIEVGQVFKLGTKYSESMNATFLDNQGKAQSLIMGCYGIGISRTLSAIVEQNHDD 458

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GI+WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  A
Sbjct: 459 NGIVWPKSVTPFDLHLISINPKKDDQRELADALYAEFNTK-FDVLYDDRQERAGVKFNDA 517

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 518 DLIGLPLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|82750864|ref|YP_416605.1| prolyl-tRNA synthetase [Staphylococcus aureus RF122]
 gi|114152256|sp|Q2YXK5|SYP_STAAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|82656395|emb|CAI80814.1| prolyl-tRNA synthetase [Staphylococcus aureus RF122]
          Length = 567

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 115/282 (40%), Positives = 174/282 (61%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGTELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK   D+    E  +  
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSK-ESDYAANIEKAEVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              +      Q        +    ++L D L        + +
Sbjct: 240 YEPNHKHTTVQSLEKIETPNVKTAQELADFLGRPVDEIVKTM 281



 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD  GI+W
Sbjct: 404 GIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDDNGIVW 463

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  ADL+G 
Sbjct: 464 PKSVTPFDLHLISINPKKDDQRELADALYAEFNTK-FDVLYDDRQERAGVKFNDADLIGL 522

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           PL+++VG +  S+  VE+K RLTG  E++ + +++   ++++ N +
Sbjct: 523 PLRIVVGKR-ASEGIVEVKERLTGDSEEVHIADLMTVITNKYDNLK 567


>gi|15924253|ref|NP_371787.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926846|ref|NP_374379.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|21282875|ref|NP_645963.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|148267753|ref|YP_001246696.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393812|ref|YP_001316487.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|156979584|ref|YP_001441843.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315619|ref|ZP_04838832.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253733499|ref|ZP_04867664.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006050|ref|ZP_05144651.2| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795681|ref|ZP_05644660.1| prolyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|258416084|ref|ZP_05682352.1| prolyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|258421667|ref|ZP_05684591.1| prolyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|258434823|ref|ZP_05688897.1| prolyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|258444601|ref|ZP_05692930.1| prolyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|258447566|ref|ZP_05695710.1| prolyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|258449408|ref|ZP_05697511.1| prolyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|258454787|ref|ZP_05702751.1| prolyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|269202880|ref|YP_003282149.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282892751|ref|ZP_06300986.1| prolyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|295406200|ref|ZP_06816007.1| prolyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|296274821|ref|ZP_06857328.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1]
 gi|297208091|ref|ZP_06924522.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297244428|ref|ZP_06928311.1| prolyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|300912172|ref|ZP_07129615.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|81175021|sp|Q99UK9|SYP_STAAM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81175022|sp|Q7A5Y3|SYP_STAAN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81175025|sp|Q7A120|SYP_STAAW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980161|sp|A7X1P3|SYP_STAA1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189083516|sp|A6U182|SYP_STAA2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189083517|sp|A5ISE7|SYP_STAA9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|13701063|dbj|BAB42358.1| proline-tRNA ligase [Staphylococcus aureus subsp. aureus N315]
 gi|14247033|dbj|BAB57425.1| proline-tRNA ligase [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204314|dbj|BAB95011.1| proline-tRNA ligase [Staphylococcus aureus subsp. aureus MW2]
 gi|147740822|gb|ABQ49120.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946264|gb|ABR52200.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|156721719|dbj|BAF78136.1| proline-tRNA ligase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253728553|gb|EES97282.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789653|gb|EEV27993.1| prolyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|257839232|gb|EEV63708.1| prolyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|257842353|gb|EEV66778.1| prolyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|257849184|gb|EEV73166.1| prolyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|257850094|gb|EEV74047.1| prolyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|257853757|gb|EEV76716.1| prolyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|257857396|gb|EEV80294.1| prolyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|257863170|gb|EEV85934.1| prolyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|262075170|gb|ACY11143.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282764748|gb|EFC04873.1| prolyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|285816945|gb|ADC37432.1| Prolyl-tRNA synthetase [Staphylococcus aureus 04-02981]
 gi|294968788|gb|EFG44810.1| prolyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|296887334|gb|EFH26236.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297178458|gb|EFH37704.1| prolyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|300886418|gb|EFK81620.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|312829657|emb|CBX34499.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315131057|gb|EFT87041.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727670|gb|EGG64126.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus 21172]
          Length = 567

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK   D+    E  
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSK-ESDYAANIEKA 236



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 118/231 (51%), Gaps = 3/231 (1%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENK 275
            E +++      D        + D    +N  V   +            E    S     
Sbjct: 339 KEIKIYADNFVQDLNNLVVGANEDGYHLINVNVGRDFNVDEYGDFRFILEGEKLSDGSGV 398

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD 
Sbjct: 399 AHFAEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDD 458

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GI+WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  A
Sbjct: 459 NGIVWPKSVTPFDLHLISINPKKDDQRELADALYAEFNTK-FDVLYDDRQERAGVKFNDA 517

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 518 DLIGLPLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|329733665|gb|EGG69993.1| proline--tRNA ligase [Staphylococcus aureus subsp. aureus 21193]
          Length = 567

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK   D+    E  
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSK-ESDYAANIEKA 236



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 118/231 (51%), Gaps = 3/231 (1%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENK 275
            E +++      D        + D    +N  V   +            E    S     
Sbjct: 339 KEIKIYADNFVQDLNNLVVGANEDGYHLINVNVGRDFNVDEYGDFRFILEGEKLSDGSGV 398

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
              A GIEVG +F  GTKYS  M+ATF    GK   + MG YGIG  R ++A++E +HD 
Sbjct: 399 AHFAEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYGIGISRTLSAIVEQNHDD 458

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GI+WP SV PF + LI+I       R+  + +YA  +    DV +DD  E+ G +F  A
Sbjct: 459 NGIVWPKSVTPFDLHLISINPKKDDQRELADALYAEFNTK-FDVLYDDRQERAGVKFNDA 517

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G PL+++VG +  S+  VE+K RLTG  E++ +++++   ++++ N +
Sbjct: 518 DLIGLPLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVITNKYDNLK 567


>gi|148284343|ref|YP_001248433.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
 gi|166225471|sp|A5CD12|SYT_ORITB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146739782|emb|CAM79649.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
          Length = 648

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 72/451 (15%), Positives = 148/451 (32%), Gaps = 53/451 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L        ++G+  W   G      +   I  +  R G
Sbjct: 232 YLHRLSEAQKRDHRKLGRELELF--HFQDEAQGMPFWHDKGWTIFKIIKNYISCQIQRAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--------------NDKAMIYGPTHE 111
            IE++ P + S  LW +SG ++ + + M  L                    A+   P + 
Sbjct: 290 YIEVNTPMVLSQKLWEKSGHWEKFRENMFTLDTNVAEKDHNLIKDSIETKCALALKPMNC 349

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
                IF   IKSYR+LP    +     R E     +G+MR R F+  DA+ F    + +
Sbjct: 350 PGHIQIFNYTIKSYRDLPLRMAEFGSCHRYEPSGALYGLMRVRSFVQDDAHIFCTEDQIT 409

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
             +         +++   G   + ++    P                      +    D 
Sbjct: 410 DETIKFCH-LLKQVYQDFGFPEVKIKFSDRPEKR-----------------AGTDKIWDK 451

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +       +    +I     A Y    +     L D++    +     ++    F  
Sbjct: 452 AEQALIHAIQTLGEEYTINRGEGAFYGPKLEFI---LTDAIGREWQCGTLQVD----FVL 504

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
             +    ++A++  ++G       +    +G+      ++   + G+  IW        I
Sbjct: 505 PER----LNASYISSEGSKKRPVILHRAILGSFERFIGILIEHYSGRLPIWLA-----PI 555

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +  +   D+      ++++  L         D   ++I  +         PL  I+G K
Sbjct: 556 QVAVVSITDEAVN-YAKQLHQELIDNNIRSTLDISNQKINYKIRNFFTAKVPLIAILGKK 614

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                K+ I+   +  ++ +S  E+I +   
Sbjct: 615 ESESGKIAIRTLGSQEQQVISSSELIAHIRK 645


>gi|305681315|ref|ZP_07404122.1| proline--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
 gi|305659520|gb|EFM49020.1| proline--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
          Length = 666

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 102/282 (36%), Positives = 150/282 (53%), Gaps = 5/282 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+Y+WLPLG + L  +  ++REE 
Sbjct: 86  RLSSLFLRTLREDPADAEVPSHKLLVRAGYIRRAAPGVYTWLPLGLRTLRKIEKVVREEM 145

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L S + + ++ R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 146 DNIGAQELLFPALLSREPYEQTRRWTEYGDNLFRLKDRKGNDMLLGPTHEEMFARQVKDM 205

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T  G + SY     +Y
Sbjct: 206 FTSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDAGLEQSYLAHRAAY 265

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             IF RL L+    +A SG +GG  S EF+ ++  GE   F      D+    E      
Sbjct: 266 QAIFDRLNLEYAICKATSGAMGGSASEEFLAISPNGE-DTFVRATEGDYAANVEAVTT-- 322

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                +  +    P A   +        +L +    +   I+
Sbjct: 323 --QPGTTRDFTNLPEAVVHETPESTTIAALVDWANGAGITID 362



 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 260 SDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +V   +  D  P+ + V    RGIE+GHIF  G KY+           GK     MGSY
Sbjct: 482 VEVAEIREGDPAPDGQGVLTLERGIEIGHIFQLGRKYTEVFDVQILDEHGKRTIPTMGSY 541

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+V  + E  HD  G+ WP  VAP+++ ++     D+    A + I A+L   G 
Sbjct: 542 GIGISRLVGVIAEQHHDDNGLNWPVEVAPYQVHVVVAN-KDKAALAAGDDIVAQLDATGV 600

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +V +DD      G +F  ++LLG P  V++G +  S+  VE++ R  G   ++   ++++
Sbjct: 601 EVLFDDRPKVSPGVKFKDSELLGMPYIVVLG-RSFSNGIVELRIRG-GETLEVPAADIVD 658

Query: 437 YASHRFSN 444
             +     
Sbjct: 659 TVTKLIHK 666


>gi|160943529|ref|ZP_02090762.1| hypothetical protein FAEPRAM212_01020 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445208|gb|EDP22211.1| hypothetical protein FAEPRAM212_01020 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103777|emb|CBL01321.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 594

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 155/439 (35%), Gaps = 40/439 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD      ++ L   M      +G+  +LP G      +   I+E++   G + + 
Sbjct: 189 EARERDHRKIGKEMGLF--MTDDLVGRGLPMFLPAGYTVWQELENYIKEKERARGYLHVM 246

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + + +L+  SG +D Y + M    +   ++ +  P +      I+ +   SYR+LP 
Sbjct: 247 TPCIGTVNLYKTSGHWDHYRENMFPAMEMEGESYVLRPMNCPHHMMIYANRPHSYRDLPM 306

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +I   FR E      G+ R R F   DA+ F    +        +      ++    
Sbjct: 307 RIGEIAHDFRYESSGTLKGIERGRHFCQNDAHLFCTPEQIKSE-VANVCDLIFEVYKDFN 365

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIISLNSI 248
           +                        D  + + +   D   +    +      ++    + 
Sbjct: 366 ITDYRCVLSLR--------------DPADKKKYHDDDAMWNHAEQALREVLTELGIHFTE 411

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    DV    +  ++     +S   ++    F    K+      T+   DG 
Sbjct: 412 EIGEAAFYGPKLDV---NVKPAVGAEYTLSTCQLD----FCLPAKF----HLTYVDKDGS 460

Query: 309 DHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +    +     +G++    A +    +     +P  +AP ++ ++ +    +   +  + 
Sbjct: 461 EKTPVVLHRAILGSLDRFMAYLI---EETKGKFPTWLAPTQVKVLPV---SEKTLEYAQD 514

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +  +LS  G  V  DD  ++IG +   A  +   P  +++G+K      + ++ R  G  
Sbjct: 515 VTEKLSDAGIRVVLDDDNQKIGYKIRAAQQVDRVPYMLVLGAKEAEAGNISVRDRK-GET 573

Query: 427 EDMSLEEVINYASHRFSNN 445
            +MSLE+ I   +      
Sbjct: 574 AEMSLEDFIAKVTTEIRTR 592


>gi|269940754|emb|CBI49136.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TW20]
          Length = 567

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK   D+    E  
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSK-ESDYAANIEKA 236



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 110/188 (58%), Gaps = 4/188 (2%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D       + L +   V+    GIEVG +F  GTKYS  M+ATF    GK   + MG YG
Sbjct: 382 DFRFILEGEKLSDGSGVAHFAEGIEVGQVFKLGTKYSESMNATFLDNQGKAQSLIMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R ++A++E +HD  GI+WP SV PF + LI+I       R+  + +YA  +    D
Sbjct: 442 IGISRTLSAIVEQNHDDNGIVWPKSVTPFDLHLISINPKKDDQRELADALYAEFNTK-FD 500

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V +DD  E+ G +F  ADL+G PL+++VG +  S+  VE+K RLTG  E++ +++++   
Sbjct: 501 VLYDDRQERAGVKFNDADLIGLPLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVI 559

Query: 439 SHRFSNNR 446
           ++++ N +
Sbjct: 560 TNKYDNLK 567


>gi|297626631|ref|YP_003688394.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922396|emb|CBL56968.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 588

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 118/385 (30%), Positives = 175/385 (45%), Gaps = 19/385 (4%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK F+  L+++P  AEI SH+ ++R G I + + GIYSWLPLG K L  V  I+REE +
Sbjct: 1   MSKLFVRTLRDDPAAAEIPSHRFLVRAGYIRRVAPGIYSWLPLGLKVLQRVENIVREEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+ +P L   + +  S R+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  AMGGQEVLLPALLPREPYEISNRWAEYGPNLFRLVDRKGADMLLGPTHEEMFTLLVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+  EG   SY K   +Y+
Sbjct: 121 SSYKDLPVILYQIQTKYRDEARPRAGILRGREFVMKDSYSFDVDDEGLDASYLKHRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF RLG + + ++A +G +GG  S EF+ L++ GE     S       + +      D 
Sbjct: 181 RIFDRLGFEYVIVKANAGAMGGSASEEFLALSENGEDTFVRSAGGYAANVEAVTVPVPD- 239

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                 ++   AP A   D  +    D+L     ++ R       +  G      +  T 
Sbjct: 240 -----PIDFTDAPPARVVDTPDVPTIDTLV--ALLNERYPREDRAWQAGDTLKNVVFMTV 292

Query: 303 --KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP-FKISLINIKAHDQ 359
              G          G   +   R+  AV  S  +              K  +  +     
Sbjct: 293 APDGTRAPLVIGLPGDRDVDPDRLAVAVEPSVIEPFEDEDFKRYPGLVKGYIGPVLDGAA 352

Query: 360 VCRDACEKIYARLSKVGCDVFWDDM 384
           +  +            G     D  
Sbjct: 353 LLGEKA--------SSGVRYLLDPR 369



 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 4/183 (2%)

Query: 258 ATSDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +DV + +  D  P+       ARG+E+GHIF  G KY+  +       +GK   V MG
Sbjct: 400 GVADVADVREGDPAPDNSGPLTLARGVEMGHIFQLGRKYAESLDLKVLDKNGKLVTVTMG 459

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R V  + ES+ D KG+ WP  VAPF++ ++      +   +A  +I  +L   
Sbjct: 460 SYGIGVSRAVGMIAESTCDDKGLCWPAEVAPFQVQIVATGKGGE-ILEAATRIAEQLDAA 518

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  DD     G +F  A+LLG P  ++VG + ++D  VE++ R TG + ++S+EE +
Sbjct: 519 GVRVLLDDRKASPGVKFTDAELLGMPTSLVVG-RGLADGVVELRDRKTGSKREVSVEEAV 577

Query: 436 NYA 438
           +  
Sbjct: 578 DEV 580


>gi|21224048|ref|NP_629827.1| prolyl-tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|256784874|ref|ZP_05523305.1| prolyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|289768768|ref|ZP_06528146.1| prolyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|15214317|sp|Q9KYR6|SYP_STRCO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|7801271|emb|CAB91135.1| prolyl tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|289698967|gb|EFD66396.1| prolyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 567

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 103/238 (43%), Positives = 144/238 (60%), Gaps = 1/238 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK     L+++P DAE+ SHKL++R G + + + G++SWLPLG+K L N+  I+REE 
Sbjct: 8   RMSKLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGLWSWLPLGKKVLGNIERIVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR+  YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVQLPALLPREPYEATGRWQEYGPELFRLQDRKGGDYLLGPTHEEIFTLLVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REFLMKD+YSFD+  EG   SY     +Y
Sbjct: 128 ASSYKDLPVILYQIQNKYRDEARPRAGILRGREFLMKDSYSFDVADEGLAESYALHRAAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            RIF RLGL    + A +G +GG  S EF+  A+ GE   F      D+   +E   F
Sbjct: 188 QRIFERLGLDYRIVAATAGAMGGSKSEEFLAPAEAGE-DTFADCPNCDYAANTEAITF 244



 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 269 DSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P         R IE+GHIF  G KY+  +     G +GK   V MGSYGIG  R VA
Sbjct: 396 DPCPNCGTGLKLDRAIEIGHIFQLGRKYADALKLDVLGQNGKPARVTMGSYGIGVSRAVA 455

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-G 385
           A+ E   D KG++W   VAP  +    + A   +  +   ++  +L+  G  V  DD  G
Sbjct: 456 ALAEQHADDKGLVWSKEVAPADVH--VVAAGKALQTELALEVSDKLAAAGVRVLVDDRAG 513

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              G +F  A+L+G P  ++ G +   +  VE+K R TG RE++++EE +   + 
Sbjct: 514 VSPGVKFTDAELIGVPQILVAGRRS-GEGVVELKDRRTGEREEVTVEEALTRLTS 567


>gi|325962798|ref|YP_004240704.1| prolyl-tRNA synthetase, family II [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468885|gb|ADX72570.1| prolyl-tRNA synthetase, family II [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 603

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 109/270 (40%), Positives = 152/270 (56%), Gaps = 6/270 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ASH+L++R G I + + GIY+WLPLG   L  V A+IREE 
Sbjct: 4   RLSQLFLRTLREDPVDAEVASHRLLVRAGYIRRAAPGIYTWLPLGLSVLRKVEAVIREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+  P L   + +  + R+  YG+ + RL DR     +  PTHEE+ T + +  
Sbjct: 64  AAIGAQEVHFPALLPREPYEATNRWTEYGEGLFRLQDRKGADYLLAPTHEEMFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY     +Y
Sbjct: 124 YSSYKDLPLSLYQIQNKYRDEARPRAGLLRGREFIMKDSYSFDVDDAGLDASYAAHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           LRIF RLGL+ IP+ A +G +GG  S EF+   D GE     S       + +  T    
Sbjct: 184 LRIFERLGLEVIPVTATAGAMGGSKSEEFLHPTDIGEDTFVRSAGGYAANVEAVTTVVP- 242

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  ++   AP A   D  +    D+L
Sbjct: 243 -----GEIDFTGAPAAVVRDTPDTPTIDTL 267



 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 114/240 (47%), Gaps = 5/240 (2%)

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E ++ A++    ++     +           +    +  +V      +    +    +  
Sbjct: 366 ESLLGAESATKLLYLVDPRVVRGTAWITGANEAGKHVYGLVAGRDFTWDGVIECTEVREG 425

Query: 269 DSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+       ARGIE+GHIF  G KY+  +       +GK   V MGSYG+G  R VA
Sbjct: 426 DPAPDGSGPLEIARGIEMGHIFQLGRKYAEALELKVLDQNGKQVTVTMGSYGVGVTRAVA 485

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-G 385
           A+ ES+HD +G++WP +VAP  + ++ +    +      E++ A L   G DV  DD   
Sbjct: 486 ALAESNHDARGLVWPRAVAPADVHVVAVGKG-EEIFATAERLAAELEAAGLDVLLDDRPK 544

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              G +F  A+L+G P  + VG + + D  VEIK R +G  E++++++ ++Y  +    +
Sbjct: 545 VSPGVKFGDAELVGVPTILAVG-RGLVDGVVEIKDRRSGEAENVAVDKAVDYVVNAVRAS 603


>gi|87303299|ref|ZP_01086092.1| Threonyl-tRNA synthetase, class IIa [Synechococcus sp. WH 5701]
 gi|87282194|gb|EAQ74155.1| Threonyl-tRNA synthetase, class IIa [Synechococcus sp. WH 5701]
          Length = 603

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 67/428 (15%), Positives = 127/428 (29%), Gaps = 36/428 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y     +   RD       L L + +  +   G+  W P G +    +    R+   
Sbjct: 182 LAEYKHRKQEALRRDHRRLGTDLQLFS-IEDEAGAGLVFWHPRGARMRLLIEDFWRQAHF 240

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +    LW  SG  D Y + M      +++     P +       + S +
Sbjct: 241 AAGYDLLYTPHVADLSLWKTSGHLDFYSESMFGPMQVDERQYQLKPMNCPFHVLTYASTL 300

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP  + ++   +R E      G+MR R F   DA+ F L  +             
Sbjct: 301 RSYRELPIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHIFCLPEQIGDEIL------- 353

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                        +      +     H + V   T   +        D          D 
Sbjct: 354 -----------GVLNLTETILSSFDFHTYEVNLSTRPEKSIGDDAVWDLATTGLIEALDR 402

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D++    + S   ++    F    ++ L   A 
Sbjct: 403 KGWPYKIDEGGGAFYGPKIDI---KIEDAIGRMWQCSTIQLD----FNLPERFDLHYVAA 455

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 +   +   +      R    ++E+                              
Sbjct: 456 --DGSRQRPIMIHRAIFGSLERFFGIMVENYAGDFPFWLAPEQVRLLPVT-------DEV 506

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E++  +L   G     D  G+++G      +    P+  ++G+K      V ++ R
Sbjct: 507 IPYAEEVLGQLRSAGVRAAIDRSGDRLGKLIRHGEQQKIPVLAVIGAKEAEQGSVSLRSR 566

Query: 422 LTGIREDM 429
             G    +
Sbjct: 567 RDGDLGSV 574


>gi|296171596|ref|ZP_06852836.1| proline--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894051|gb|EFG73813.1| proline--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 582

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 96/246 (39%), Positives = 140/246 (56%), Gaps = 1/246 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I   + G+YSWLPLG + L  +  I+REE 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYIRPVAPGLYSWLPLGLRVLRRIERIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  DAIGGQEILFPALLPRAPYETTNRWTEYGDGVFRLKDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPVLLYQIQNKYRDEARPRAGILRVREFLMKDSYSFDIDDAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFD 240
            RIF+RL ++ + + A SG +GG  S EF+  +  GE   V C +      + +  T   
Sbjct: 184 QRIFNRLRVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRCLESGYAANVEAVVTARP 243

Query: 241 DIISLN 246
           +   + 
Sbjct: 244 ETRPIE 249



 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/176 (36%), Positives = 92/176 (52%), Gaps = 4/176 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     VSARGIEV HIF  G KY+   +A   G DGK   + MG
Sbjct: 395 GTIEAAEVRDGDPSPDGAGPLVSARGIEVAHIFQLGRKYTDAFAADVLGEDGKPVRLTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R+VA + E  HD  G+ WP SVAPF + L  I   D   R     +   L ++
Sbjct: 455 SYGLGVSRMVAVIAEQHHDELGLRWPSSVAPFDVHL-VIANKDAEARTGATGLATDLDRL 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           G +V  DD     G +F  A+LLG P  ++VG +  ++  VE++ R  G   ++++
Sbjct: 514 GVEVLLDDRQASPGVKFKDAELLGVPWILVVG-RGWANGVVELRDRFGGQTRELAV 568


>gi|73981327|ref|XP_860843.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 6
           [Canis familiaris]
          Length = 701

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 91/444 (20%), Positives = 154/444 (34%), Gaps = 43/444 (9%)

Query: 8   LPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   +E   +AE+  H+ + +       H+ S G   +LP G +  + + A IR E  R 
Sbjct: 287 LRAWEEWKGEAELRDHRRIGKAQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYTRR 346

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PTL SA LW  SG ++ Y ++M  L    D  +   P +      +F    +S
Sbjct: 347 GFSEVKTPTLFSAKLWELSGHWEHYQEDMFVLHHSTDT-LALKPMNCPAHCLMFAHRPRS 405

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R LP       +  R E      G+ R R F   DA+ F   P+  +            
Sbjct: 406 WRELPLRLADFGVLHRAEASGSLGGLTRLRCFQQDDAHIFCA-PDQLEEEIQGCLDFLRS 464

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++  LG         + P G                         D          ++  
Sbjct: 465 VYAVLGFSFRLA-LSTRPSGF-----------------LGESCLWDQAEQVLQRALEEFG 506

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               +     A Y    DVH   L D+L    +     ++    F    ++       +K
Sbjct: 507 EPWDLKPGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPLRFD----LQYK 555

Query: 304 GADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G  G  +  V +    +G++  +  V+    +  G  WP  ++PF++ +I +        
Sbjct: 556 GQAGVLERPVLIHRAVLGSVERMLGVLA---ESYGGKWPLWLSPFQVVVIPVG---AEQE 609

Query: 363 DACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   +   RL   G     D D G  +  +   A L  +  Q +VG K  S   V I+ R
Sbjct: 610 EYAREAQQRLQAAGLVCDLDADSGLTLSRRVRRAQLAHYNFQFVVGQKEQSKKTVNIRTR 669

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
                 +  L E +       +  
Sbjct: 670 DNRQLGERDLTEAVQRLLELQNTR 693


>gi|68536143|ref|YP_250848.1| threonyl-tRNA synthetase [Corynebacterium jeikeium K411]
 gi|123748238|sp|Q4JVC7|SYT_CORJK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|68263742|emb|CAI37230.1| thrS [Corynebacterium jeikeium K411]
          Length = 691

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 64/458 (13%), Positives = 135/458 (29%), Gaps = 49/458 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L +    +   G   + P G      +    R+   
Sbjct: 254 LAEYQTMMAEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPDGGIVRLEMEEHSRKRHI 312

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND------------KAMIYGPTH 110
            +G   ++ P +   DL+ +SG  D Y   M      +             +     P +
Sbjct: 313 ASGYSFVNTPHVTKGDLFQKSGHLDFYADGMFPPMQLDGETDDEGNVTKPAQDYYAKPMN 372

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
             +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T + 
Sbjct: 373 CPMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIYC-TEDQ 431

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
            +     +    + +    GL    +   +                    +   S +  +
Sbjct: 432 LEQELTTVLEFIISLLRDYGLDDFYLELST----------------KDPNKFVGSDEIWE 475

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                                   A Y       + +  D++    ++S   ++    F 
Sbjct: 476 RSTEILERVATKSGLELVPDPAGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FN 528

Query: 290 FGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++    +  +   DG       +     G++     V+   + G    W        
Sbjct: 529 LPERF----NLEYTAPDGSKQRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVVG 584

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           I +           +  E   A L   G     D   +++  +         P  ++VG 
Sbjct: 585 IPVA------DEFNEYLENFAADLRAQGIRAEVDTSDDRMQKKIRNHTTGKVPFMLLVGG 638

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + V  + V  +         +  E+ +   S+  +  R
Sbjct: 639 RDVEANAVSFRFLDGTQVNGVPREDALRIISNWIAERR 676


>gi|326674558|ref|XP_002664809.2| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like, partial
           [Danio rerio]
          Length = 441

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 146/438 (33%), Gaps = 42/438 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD         L     H  S G   ++P G    + +   I+ E  R G  E+ 
Sbjct: 37  EEARRRDHRRIGKAQELF--FFHDVSPGSCFFMPKGAHIYNTLTDFIKSEYRRRGFSEVV 94

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            PTL S  LW  SG +  Y + M  ++          P +      +F   ++S+R +P 
Sbjct: 95  TPTLFSTALWERSGHWQHYSENMFSVSSET-HTFALKPMNCPAHCVMFEQRLRSWREMPI 153

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            +       R+E      G+ R R F   DA+ F  TPE  +            ++   G
Sbjct: 154 RWADFGALHRNEASGTLGGLTRVRRFCQDDAHIFC-TPEQLEQEITACLDFVRSVYRVFG 212

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P                           D       +          + 
Sbjct: 213 FSFHCL-LSTRPASS-----------------MGDSALWDCAEQQLESSLKLFQERWELN 254

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    ++    +  + GADG+ 
Sbjct: 255 PGDGAFYGPKIDIL---IRDALGRQHQCATIQLD----FQLPIRF----NLQYVGADGQM 303

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +    +G++  + A++    +  G  WP  ++P ++ ++ +    +      +++
Sbjct: 304 KRPIMIHRAVLGSLERMIAILA---ENFGGKWPFWLSPAQVMVVPVGGSSE---AYAQQV 357

Query: 369 YARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            +RL + G     DD  G  +  +   A L  +    +VG K      V ++ R      
Sbjct: 358 VSRLREAGFMADIDDDHGNTLNKKIRSAQLAQYNYIFVVGEKESECGTVSVRTRAGQQIG 417

Query: 428 DMSLEEVINYASHRFSNN 445
             +LE+V+   +      
Sbjct: 418 QKTLEDVMKTLTQLTETR 435


>gi|88855365|ref|ZP_01130029.1| prolyl-tRNA synthetase [marine actinobacterium PHSC20C1]
 gi|88815272|gb|EAR25130.1| prolyl-tRNA synthetase [marine actinobacterium PHSC20C1]
          Length = 593

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 99/245 (40%), Positives = 145/245 (59%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+E+P DAE+ASH+L++R G I + + G+++WLPLG K    + AIIREE 
Sbjct: 4   RLSQLFVRTLREDPVDAEVASHRLLVRAGYIRRQAPGVFAWLPLGLKVRRKIEAIIREEL 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+  P L   + +  +GR+  YG  + RL DR D   +  PTHEEV T + +  
Sbjct: 64  ESFGAQEVLFPALLPREPYELTGRWTEYGDGIFRLKDRKDADYLLAPTHEEVFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + YQIQ K+RDE RPR G++R REF MKD+YSFD T  G   SY +   +Y
Sbjct: 124 YSSYKDLPLSLYQIQDKYRDEARPRAGLLRGREFSMKDSYSFDYTDAGLDLSYQQHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL+ + + A++G +GG  S EF+     GE     +       + +  T   +
Sbjct: 184 ERIFTRLGLEYVVVSADAGAMGGSKSEEFLHPTPIGEDTFVRTAGGYAANVEAYRTTPPE 243

Query: 242 IISLN 246
            + ++
Sbjct: 244 ALPID 248



 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 5/180 (2%)

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +V + +  D  P+        RG+E+GH+F  G KY+  +       +GK   V MG
Sbjct: 410 GTVEVSDVRAGDPAPDGSGPIETARGMEIGHVFQLGRKYAEVLGLKVLDENGKLVTVTMG 469

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R++AA+ E+++DGKG++WP +++PF + ++     D V  +  E +   L   
Sbjct: 470 SYGIGVTRLMAAIAETTNDGKGLLWPKNISPFDVHIVAAG-KDAVVFETAESLVTTLESA 528

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G DV +DD      G +F  A+LLG P  VIVG +  ++  VE+  R+T  R   ++ +V
Sbjct: 529 GLDVLFDDRVKVSPGVKFGDAELLGVPKIVIVG-RDAANGMVEVWDRVTNERTSTAIADV 587


>gi|323441042|gb|EGA98749.1| prolyl-tRNA synthetase [Staphylococcus aureus O11]
 gi|323443911|gb|EGB01522.1| prolyl-tRNA synthetase [Staphylococcus aureus O46]
          Length = 567

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 112/237 (47%), Positives = 164/237 (69%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF    E    +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEESLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK   D+    E  
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSK-ESDYAANIEKA 236



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 110/188 (58%), Gaps = 4/188 (2%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D       + L +   V+    GIEVG +F  GTKYS  M+ATF    GK   + MG YG
Sbjct: 382 DFRFILEGEKLSDGSGVAHFAEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R ++A++E +HD  GI+WP SV PF + LI+I       R+  + +YA  +    D
Sbjct: 442 IGISRTLSAIVEQNHDDNGIVWPKSVTPFDLHLISINPKKDDQRELADALYAEFNTK-FD 500

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V +DD  E+ G +F  ADL+G PL+++VG +  S+  VE+K RLTG  E++ +++++   
Sbjct: 501 VLYDDRQERAGVKFNDADLIGLPLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVI 559

Query: 439 SHRFSNNR 446
           ++++ N +
Sbjct: 560 TNKYDNLK 567


>gi|302788105|ref|XP_002975822.1| hypothetical protein SELMODRAFT_267898 [Selaginella moellendorffii]
 gi|300156823|gb|EFJ23451.1| hypothetical protein SELMODRAFT_267898 [Selaginella moellendorffii]
          Length = 420

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 150/444 (33%), Gaps = 46/444 (10%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +    +E  R D       L + +  I +    G+  W P G      +    ++   
Sbjct: 17  KAYQTQKEEAKRRDHRRLGQDLEIFS--IQEDAGGGLVFWHPKGALIRHLIEDYWKKVHL 74

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G   +  P +  A+LW  SG  D Y + M       ++     P +      I++  +
Sbjct: 75  RRGYELLYTPHIAKAELWKRSGHLDFYKENMFEQIKIEEEFYQLRPMNCPFHIQIYKDRV 134

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR LP  F ++   +R EL               DA+ F L  +        +     
Sbjct: 135 RSYRELPIKFAELGTVYRYELSG-----ALHGLFRDDAHIFCLPEQIRGE-IKSVLDLTE 188

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I  + G ++  +   + P                  +   S D       +      D 
Sbjct: 189 EILSQFGFQNYEINLSTKP-----------------EKAVGSDDIWHKATEALKDAISDK 231

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A Y    D+   K+ D++    + S   ++    F    ++      T+
Sbjct: 232 GWTYGIDEGGGAFYGPKIDL---KIEDAIGRKWQCSTIQVD----FNLPERFD----LTY 280

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 +   + +     G++     ++    +     +P  +AP +  L+ +   +   
Sbjct: 281 VDPSQARKQPIMIHRAIFGSIERFVGILI---ESYAGDFPLWIAPVQARLLPVTDTE--- 334

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              C+++ ARL +          GE++      A++   PL  +VG K V    + ++ R
Sbjct: 335 LPYCKQVLARLREKDIRAEI-ACGERLSKLIRNAEVQKIPLMAVVGPKEVEAQTLTVRTR 393

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G    +S++EVI+      +  
Sbjct: 394 HGGELGTLSVDEVIDRIETAVATR 417


>gi|153950997|ref|YP_001397450.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. doylei
           269.97]
 gi|166223330|sp|A7H1S0|SYT_CAMJD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|152938443|gb|ABS43184.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 602

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 151/444 (34%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L T    +   G+  WL  G +    +  ++ +   
Sbjct: 194 LKEYLAIIEEAKKRDHRKLGIELKLFT-FNDEIGGGLPIWLGNGARLRSKLEHMLYKIHR 252

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P L  AD W  SG Y +Y + M      +++     P +      +++S +
Sbjct: 253 LRGYEPVRGPELLKADAWKISGHYANYKENM-YFTQIDEQEYGIKPMNCVGHIKVYQSDV 311

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++    
Sbjct: 312 RSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFV 370

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +                               T   +     +  +    +     D+
Sbjct: 371 DNLMKLFDFSYEMEI------------------STKPEKAIGDDEIWEVATKALKEALDE 412

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D+L    +     ++    F   +++       
Sbjct: 413 QGLKYGIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPSRF----KLE 461

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +D +      +    +G+      ++            +       + + I    + 
Sbjct: 462 YTDSDNEKKQPVMLHRAILGSFERFIGILTEHC------AGEFPFFIAPTAVGIVPIGEA 515

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I   L ++  D    +  E +  +  +A+    P+ +++G   V+   V ++ 
Sbjct: 516 HIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVAKRSVALRD 575

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    ++++SL+E I     + S 
Sbjct: 576 RRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|227497547|ref|ZP_03927775.1| proline--tRNA ligase [Actinomyces urogenitalis DSM 15434]
 gi|226833001|gb|EEH65384.1| proline--tRNA ligase [Actinomyces urogenitalis DSM 15434]
          Length = 614

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 101/248 (40%), Positives = 145/248 (58%), Gaps = 2/248 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  F+  L+E+P DAE+ASHKL++R   I + + GIY+WLPLG   +  + AI+REE N
Sbjct: 5   LSTAFIRTLREDPADAEVASHKLLVRASYIRRTAPGIYTWLPLGLAVVRKIEAIVREEMN 64

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G  E+  P L  A+ +  + R+D YG  +  L DR     +  PTHEE+ T + +   
Sbjct: 65  RMGGQEVHFPALLPAEPYKATQRWDEYGPTLFTLQDRKGGDYLLAPTHEEMFTLLAKDMF 124

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY +   +Y 
Sbjct: 125 SSYKDLPATLYQIQTKYRDEARPRAGLIRGREFIMKDSYSFDVDDAGLDASYQRHRDAYE 184

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF RLGL+ +P+ A +G +GG  S EF+  +  GE     S     +   +E       
Sbjct: 185 RIFRRLGLEYVPVNAMAGAMGGSHSEEFLHPSPIGEDTFVRSDGG--YAANAEAVTTPVP 242

Query: 243 ISLNSIVE 250
            S+++  E
Sbjct: 243 PSVDASAE 250



 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 89/176 (50%), Gaps = 4/176 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+        RGIEVGHIF  G KY+  +  T    +GK   V MG
Sbjct: 415 GTIEAAEVREGDLAPDGSGPLHLERGIEVGHIFALGRKYAQALGFTVLDENGKARVVTMG 474

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+AA+ E++HD +G+ WP  VAP+ + ++     D+        +   L   
Sbjct: 475 SYGIGVSRVMAALAEANHDERGLAWPIQVAPYHVQVLATG-KDEQVFATAHALARELDAA 533

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           G +V +DD      G +FA ++LLG P  V+VG     +  VEI+ R +G R  + 
Sbjct: 534 GLEVLYDDRRKVSAGVKFADSELLGVPFTVVVGRDLAKEGTVEIRDRRSGERRSVP 589


>gi|315444957|ref|YP_004077836.1| prolyl-tRNA synthetase, family II [Mycobacterium sp. Spyr1]
 gi|315263260|gb|ADU00002.1| prolyl-tRNA synthetase, family II [Mycobacterium sp. Spyr1]
          Length = 584

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 99/249 (39%), Positives = 145/249 (58%), Gaps = 1/249 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ FL  L+++P DAE+ SHKL++R G +     G+YSWLPLG K L  +  I+R E +
Sbjct: 1   MSELFLRTLRDDPADAEVPSHKLLIRAGYVRPVGPGLYSWLPLGLKVLRKIEHIVRSEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P L     +  + R+  YG  + RL DR D   + GPTHEE+ T   +   
Sbjct: 61  AIGGQEILFPALLPRAPYETTNRWTEYGDTLFRLQDRRDNDYLLGPTHEEMFTLTVKGEY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFD+  +G K++Y+    +Y 
Sbjct: 121 SSYKDFPLRLYQIQNKYRDEARPRAGILRGREFLMKDSYSFDVDDDGLKNAYHAHREAYQ 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFDD 241
           RIF RL ++ + + A SG +GG  S EF+  ++ GE   V C++      + +  T   D
Sbjct: 181 RIFDRLKVRYVIVSAVSGAMGGSASEEFLAESEVGEDTFVRCAQSGYAANVEAVVTTAPD 240

Query: 242 IISLNSIVE 250
            I L+ + E
Sbjct: 241 PIPLDGLPE 249



 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/176 (36%), Positives = 94/176 (53%), Gaps = 4/176 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     V+ARGIE+GH+F  G KY+   +A   G +GK   + MG
Sbjct: 395 GTIEAAEVREGDPSPDGAGPLVAARGIEIGHVFQLGRKYADAFNADVLGENGKPVRLTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA + E  HD  G+ WP SVAPF +  + I   D   R    ++   L + 
Sbjct: 455 SYGIGVSRLVAVIAEQHHDELGLRWPGSVAPFAVH-VVIANKDAEARAGATELATALDRA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           G DV  DD     G +F  A+LLG P  V+VG +  +D  VE++ R +G + ++ +
Sbjct: 514 GADVLLDDRTASPGVKFKDAELLGVPWIVVVG-RGWADGVVELRDRFSGEKREIPV 568


>gi|227495079|ref|ZP_03925395.1| proline--tRNA ligase [Actinomyces coleocanis DSM 15436]
 gi|226831531|gb|EEH63914.1| proline--tRNA ligase [Actinomyces coleocanis DSM 15436]
          Length = 603

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 103/271 (38%), Positives = 151/271 (55%), Gaps = 6/271 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +F+  L+E+P DAE+ SHKL++R G I + + GIY+WLPLG + L  +  ++REE +
Sbjct: 5   MSSFFVRTLREDPADAEVTSHKLLVRAGYIRRTAPGIYTWLPLGLQVLKRIEKVVREEMD 64

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L  A+ + ++ R++ YG  + +L DR     +  PTHEE+ T + +   
Sbjct: 65  AVGAQEVHFPALLPAEPYQKTNRWEEYGPTLFKLRDRKAADYLLAPTHEEMFTLLVKDMY 124

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSFD+  EG   SY+    +Y 
Sbjct: 125 SSYKDLPVTLYQIQTKYRDEARPRAGLIRGREFVMKDAYSFDIDQEGLNTSYDLQRQAYQ 184

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF RLGL+ +   A SG +GG  S EF+   + GE     S         +  T     
Sbjct: 185 RIFERLGLEYVICSAMSGAMGGSRSEEFLHPCEIGEDTFVRSPGGYAANAEAVTTPVPA- 243

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                 V+    P  +  +    K  ++L E
Sbjct: 244 -----PVDATNVPAFSVHETPGAKTMEALVE 269



 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 5/193 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+       ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 410 GTIEAAEIREGDPAPDGSGPLELARGIEIGHIFQLGKKYAEALDLKVLDQNGKTQVVTMG 469

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  RV+AA+ ES +D  G+ WP  +APF + ++      +   +    I   +S  
Sbjct: 470 SYGVGVSRVLAALAESCNDENGLAWPMILAPFHLQVLATGKG-EELFETAGSIAKAVSDA 528

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G DV +DD      G +FA A+LLG P  ++VG + + D  VE++ R  G   ++ + E 
Sbjct: 529 GFDVLYDDRPKVSAGVKFADAELLGMPYVLVVG-RGLKDGVVELRDRRNGTAVELPVAEA 587

Query: 435 INYASHRFSNNRP 447
                     NR 
Sbjct: 588 SAEILRVLEENRE 600


>gi|172040605|ref|YP_001800319.1| threonyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109]
 gi|171851909|emb|CAQ04885.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 662

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 65/455 (14%), Positives = 134/455 (29%), Gaps = 50/455 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +L+E   RD      +L L +    +   G   + P G      +    R     +G
Sbjct: 229 YQHMLEEAEKRDHRRLGAELDLFS-FPDEVGSGFPVFHPNGGIVRLEMEEHSRRRHLASG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              ++ P +   DL+ +SG  D Y + M                 +  +     P +  +
Sbjct: 288 YSFVNTPHITKGDLFQKSGHLDFYAEGMFPPMQLDGETDEEGNVTKPGQDYYAKPMNCPM 347

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  + 
Sbjct: 348 HNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYC-TEDQLED 406

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    + +    GL    +   +                    +   + +  +   
Sbjct: 407 ELTTVLEFIISLLRDYGLDDFYLELST----------------KDPKKFVGTDEIWERST 450

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                  +             A Y       + +  D++    ++S   ++    F    
Sbjct: 451 EILQRVAEKSGLELVPDPAGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLPE 503

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       +   DG       +     G++     V+   + G    W        I +
Sbjct: 504 RFD----LEYTAPDGTKKRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVMGIPV 559

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                  +   +  E+  A L K G     D   +++  +         P  ++VG + V
Sbjct: 560 A------EDFTEYLEEFVADLRKDGIRAEVDTSDDRMQKKIRTHTKGKIPFMLLVGGRDV 613

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +  V  +         +  EE            R
Sbjct: 614 ENGAVSFRFHDGTQVNGVPREEAAKAIKEWIGQRR 648


>gi|251777990|ref|ZP_04820910.1| threonine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082305|gb|EES48195.1| threonine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 643

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 153/445 (34%), Gaps = 35/445 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L T       +G+   +P G K +  +   I +E+ R 
Sbjct: 228 EYLEAVEEAKKRDHNKLGRELKLFTT-DENVGQGLPLLMPKGAKIVQTLQRWIEDEEERR 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA--MIYGPTHEEVMTDIFRSHI 122
           G +    P +  +DL+  SG +D Y   M  L D           P        I+ +  
Sbjct: 287 GYVLTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDEEVFALRPMTCPFQYTIYNAEQ 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  + +    FR+E      G++R R+F         +TPE  +  +  +    
Sbjct: 347 HSYRDLPIRYGETSTLFRNESSGEMHGLIRVRQFT-LADGHLIVTPEQLEEEFKGVLELI 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I   LG            I  D+S+ F         +     D  +    +  T  D 
Sbjct: 406 KYIMKTLG------------IDEDISYRFSKWDPNNTEKYINDPDAWNKTQDTMRTILDH 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       +   A Y    D+  + +     +   +    I+           +     +
Sbjct: 454 LKIDYVEADDEAAFYGPKLDLQFKNVH---GKEDTIITLQIDFAL--------AERFDMS 502

Query: 302 FKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +G+     +     IG      A++    +     +P  ++P ++ ++ I      
Sbjct: 503 YIDKNGEKKRPYIIHRSSIGCYERTLAMLI---EKYAGAFPTWLSPVQVKVLPISDK--- 556

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  E +   L   G  +  D   E+IG +   A L   P  ++VG K  ++S+V ++ 
Sbjct: 557 YNDYAESVVKSLRNKGVRIEADYRAEKIGYKIREARLERTPYILVVGEKEAANSEVSVRS 616

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R       M L+       +  +  
Sbjct: 617 RKNDDEGAMKLDIFTERLLNEIATK 641


>gi|58263294|ref|XP_569057.1| threonine-tRNA ligase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108684|ref|XP_776995.1| hypothetical protein CNBB5220 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259678|gb|EAL22348.1| hypothetical protein CNBB5220 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223707|gb|AAW41750.1| threonine-tRNA ligase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 772

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 76/452 (16%), Positives = 157/452 (34%), Gaps = 43/452 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  K +L   +   RD         L   + +  S G   +LP+G +  + + + I++E
Sbjct: 350 MKEYKKYL--EEAAKRDHRKIGKDQELF--IFNDLSPGSAFFLPMGMRIYNTLMSFIKDE 405

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + +A+LW  SG + +Y ++M +L   +++ +   P +      IF +
Sbjct: 406 YFKRGFSEVGSPNIFNANLWKTSGHWQNYAEDMFQLK-ADEEQLALKPMNCPGHCLIFDA 464

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY+ LP  F +  +  R+E      G+ R R F+  DA+ F    +     Y   F 
Sbjct: 465 RERSYKELPLRFAEFGVLHRNEASGALSGLTRVRRFVQDDAHIFCTPDQVEAELY-SAFE 523

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G       +   P       E    A+    +V   K              
Sbjct: 524 FLDAVYKPFGFTYKVGLSTRNPKKWMGDLELWNKAEGTLREVLEQK-------------- 569

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             +     + E+  A Y    D    +L D+L  + +     ++    F    +++L   
Sbjct: 570 --VPGNWHVNEEDAAFYGPKLDF---QLTDALKRSWQCGTIQLD----FNLPERFNLKYH 620

Query: 300 ATFKGADGKDH--YVQMGSYGIGAMRVVAAVIESSH-DGKGIIWPDSVAPFKISLINIKA 356
           +  +  DG      V +    +G++    A+I  S      +                  
Sbjct: 621 SPEQNPDGTQFARPVMIHRAILGSLERFIAIITESTGGKWPLWLSPRQVVVIPVAKPFT- 679

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  +K+     + G     D     +  +   A    +   ++VG   +    V
Sbjct: 680 ------EYAQKVAKTFQEAGLYAEVDLTDNTLNKKIRNAQTAQWNFIMVVGQDELDAQAV 733

Query: 417 EIKHRLTGIR---EDMSLEEVINYASHRFSNN 445
            I++R   ++   E ++L   +        + 
Sbjct: 734 NIRNRDDEVQGREETVALSRAVEQIVKLKESK 765


>gi|254431853|ref|ZP_05045556.1| threonyl-tRNA synthetase [Cyanobium sp. PCC 7001]
 gi|197626306|gb|EDY38865.1| threonyl-tRNA synthetase [Cyanobium sp. PCC 7001]
          Length = 575

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 69/429 (16%), Positives = 130/429 (30%), Gaps = 36/429 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
              +   RD       L L + +  +   G+  W P G +    +    RE     G   
Sbjct: 161 RQEEARRRDHRRLGTDLDLFS-IEDEAGAGLVFWHPRGARMRLEIENFWREAHFAAGYEL 219

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +    LW  SG  D Y + M      +++     P +       + S ++SYR L
Sbjct: 220 LYTPHVADIGLWKTSGHLDFYSESMFGPMQVDEREYQLKPMNCPFHVLTYASTLRSYREL 279

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  + ++   +R E      G+MR R F   DA+ F L  + S      +     RI  R
Sbjct: 280 PIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCLPEQISDE-ILAILDLTERILSR 338

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
              +S  +   + P                                      D       
Sbjct: 339 FDFRSYEINLSTRPEKS-----------------IGEDAVWQLATQGLIEALDRKGWAYK 381

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           + E   A Y    D+   K+ D++    + S   ++    F    ++ L   A       
Sbjct: 382 VDEGGGAFYGPKIDL---KIEDAIGRMWQCSTIQLD----FNLPERFDLHYVAA--DGSR 432

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +   +   +      R    + E+                              R   E+
Sbjct: 433 QRPIMIHRAIFGSLERFFGIMTENYAGDFPFWLAPEQIRLLPVT-------DEVRPYAEE 485

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  +L   G     D  G+++G      + +  P+  ++G+K      V ++ R  G   
Sbjct: 486 LLGQLKGAGVRASVDHSGDRLGKLIRNGEQMKIPVLGVIGAKEAETGSVSLRSRRDGDLG 545

Query: 428 DMSLEEVIN 436
            ++   ++ 
Sbjct: 546 CVAASTLLE 554


>gi|33866012|ref|NP_897571.1| threonyl-tRNA synthetase [Synechococcus sp. WH 8102]
 gi|73919836|sp|Q7U662|SYT_SYNPX RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33638987|emb|CAE07993.1| threonyl-tRNA synthetase [Synechococcus sp. WH 8102]
          Length = 611

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 134/426 (31%), Gaps = 36/426 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD       L L + +  +   G+  W P G +    +    R+     G   + 
Sbjct: 203 EEALRRDHRRIGKDLDLFS-IEDEAGAGLVFWHPRGARMRLLIEEFWRQAHFEGGYELLY 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW  SG  D Y + M    + +++     P +       + S ++SYR LP 
Sbjct: 262 TPHVADISLWKTSGHLDFYAESMFGPMEVDEREYQLKPMNCPFHVLTYASKLRSYRELPI 321

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + ++   +R E      G+MR R F   DA+ F L  + S     K+     RI     
Sbjct: 322 RWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCLPEQISDE-ILKILDLTERILSTFD 380

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +   + P                           D          +       I 
Sbjct: 381 FNTYEINLSTRPEKS-----------------IGDDAVWDLATKGLIEALERKGWKYKID 423

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E   A Y    D+   K+ D++    + S   ++    F    ++ L   A       + 
Sbjct: 424 EGGGAFYGPKIDL---KIEDAIGRMWQCSTIQLD----FNLPERFKLDYVAA--DGSKQR 474

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             +   +      R    + E+                              +   E + 
Sbjct: 475 PIMIHRAIFGSLERFFGIMTENYAGDYPFWLAPEQVRLLPVT-------DEVQPYAESLL 527

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L++ G     D  G+++G      + +  P+  ++G+K    + V ++ R  G     
Sbjct: 528 DQLTQAGVRATIDRSGDRLGKLIRTGEQMKIPVLAVIGAKEAEQNAVSLRSRRDGDLGVA 587

Query: 430 SLEEVI 435
           ++ +++
Sbjct: 588 AVADLL 593


>gi|189183871|ref|YP_001937656.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
 gi|238692247|sp|B3CSS5|SYT_ORITI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189180642|dbj|BAG40422.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
          Length = 648

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 72/451 (15%), Positives = 147/451 (32%), Gaps = 53/451 (11%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L        ++G+  W   G      +   I  +  R G
Sbjct: 232 YLHRLSEAQKRDHRKLGRELELF--HFQDEAQGMPFWHSKGWTIFKIIKDYISCQIQRAG 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--------------NDKAMIYGPTHE 111
            IE++ P + +  LW +SG ++ + + M  L                    A+   P + 
Sbjct: 290 YIEVNTPMVLNQKLWEKSGHWEKFRENMFTLDTNAAEQDHNLIKDSIETKCALALKPMNC 349

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
                IF   IKSYR+LP    +     R E     +G+MR R F+  DA+ F    + +
Sbjct: 350 PGHIQIFNYTIKSYRDLPLRMAEFGSCHRYEPSGALYGLMRVRSFVQDDAHIFCTEDQIT 409

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
             +         +++   G   + ++    P                      +    D 
Sbjct: 410 DETIKFCH-LLKQVYQDFGFPEVKIKFSDRPEKR-----------------AGTDKIWDK 451

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +       +    +I     A Y    +     L D++    +     ++    F  
Sbjct: 452 AEQALIHAIQTLGEEYTINRGEGAFYGPKLEFI---LTDAIGREWQCGTLQVD----FVL 504

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
             +    ++A++  ++G       +    +G+      ++   + GK  IW        I
Sbjct: 505 PER----LNASYISSEGSKKRPVILHRAILGSFERFIGILIEHYSGKLPIWLA-----PI 555

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +  +   D+      ++++  L         D   ++I  +         PL  I+G K
Sbjct: 556 QVAVVSITDEAVN-YAKQLHQELIDNNIRSTLDISNQKINYKIRNFFTAKVPLIAILGKK 614

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                K+ I+   +  +  +S  E+I +   
Sbjct: 615 ESESGKIAIRTLGSQEQHVISSSELIAHIRK 645


>gi|302332869|gb|ADL23062.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 567

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRQFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK   D+    E  
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSK-ESDYAANIEKA 236



 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 114/188 (60%), Gaps = 4/188 (2%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D       + L +   V+    GIEVG +F  GTKYS  M+ATF    GK   + MG YG
Sbjct: 382 DFRFILEGEKLSDGSGVAHFAEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R ++A++E +HD  GI+WP SV+PF + LI+I       R+  +++YA+ ++   D
Sbjct: 442 IGISRTLSAIVEQNHDDNGIVWPKSVSPFDVHLISINPKKDDQRELADQLYAKFNEK-FD 500

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V +DD  E+ G +F  ADL+G PL+++VG +  S+  VE+K RLTG  E++ +++++   
Sbjct: 501 VLYDDRQERAGVKFNDADLIGLPLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVI 559

Query: 439 SHRFSNNR 446
           ++++ N +
Sbjct: 560 TNKYDNLK 567


>gi|227514714|ref|ZP_03944763.1| proline--tRNA ligase [Lactobacillus fermentum ATCC 14931]
 gi|227086918|gb|EEI22230.1| proline--tRNA ligase [Lactobacillus fermentum ATCC 14931]
          Length = 581

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 102/250 (40%), Positives = 147/250 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P  +E P DAE+ SHK+M+R G I+Q S G++++LPL  + +  +  IIREE
Sbjct: 9   MKQSQMLIPTQKEAPADAEVLSHKMMVRAGYIYQVSAGVWAYLPLAYRVIRKIEQIIREE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM +P L  ADLW ESGRY++YG  + +L DR ++  I GPTHEE +T I R 
Sbjct: 69  MDKAGAVEMLLPGLLPADLWKESGRYEAYGDNLFKLKDRRERDFILGPTHEETVTSILRD 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q K+RDE RPR+G++R +EF M D YSF     G   +Y+    +
Sbjct: 129 AIHSYKKLPLVVYQLQDKYRDEDRPRYGILRGKEFEMLDGYSFSADQAGLDQAYDLQAKA 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GL    + A+SG +GG  S EF   A  GE  +  +       +    T F 
Sbjct: 189 YRNIFDRIGLDYKVILADSGTMGGKNSQEFSAPAAIGEDVIAYTDGDYAANLEKATTKFT 248

Query: 241 DIISLNSIVE 250
               +    E
Sbjct: 249 PTKQIGEEAE 258



 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 67/184 (36%), Positives = 99/184 (53%), Gaps = 2/184 (1%)

Query: 261 DVHNEKLFDSLPEN-KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           D    +  ++ P+        GIE+GHIF  GT YS    AT    +G+D  + MG YGI
Sbjct: 395 DFRTVQEGETAPDGLPIKFTNGIEIGHIFKLGTHYSEVFGATVLDQNGRDVPMIMGCYGI 454

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R+++A+ E + D  G++WP +VAPF I +I + A  +      E+I A L + G +V
Sbjct: 455 GVSRLLSAISEQNADENGLVWPQAVAPFDIHVIPVNAKKEDQMAMAEEITANLEEAGYEV 514

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E+ G +FA ADL+G P++V VG K   +  VEIK R TG   ++  EE+    +
Sbjct: 515 LVDDRKERAGVKFADADLIGVPIRVTVGKK-AGEGIVEIKIRKTGETLEVHKEELATNIA 573

Query: 440 HRFS 443
               
Sbjct: 574 ILLK 577


>gi|254392125|ref|ZP_05007314.1| prolyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|294815425|ref|ZP_06774068.1| Prolyl-tRNA synthetase 1 [Streptomyces clavuligerus ATCC 27064]
 gi|326443777|ref|ZP_08218511.1| prolyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|197705801|gb|EDY51613.1| prolyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|294328024|gb|EFG09667.1| Prolyl-tRNA synthetase 1 [Streptomyces clavuligerus ATCC 27064]
          Length = 566

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 110/269 (40%), Positives = 154/269 (57%), Gaps = 4/269 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + +++ GI+SWLPLG+K L+NV  ++REE 
Sbjct: 7   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRNAAGIWSWLPLGKKVLENVTRVVREEM 66

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR+D YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 67  DAIGAQEVLLPALLPKEPYEITGRWDEYGAELFRLKDRKGAEYLLGPTHEEIFTQLVKDQ 126

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF MKD+YSFD T EG   SY     +Y
Sbjct: 127 CSSYKDLPVILYQIQTKYRDEARPRSGILRGREFQMKDSYSFDTTDEGLAESYALHREAY 186

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +RIF RLGL    + A SG +GG  S EF+  A  GE   F      D+   +E   +  
Sbjct: 187 IRIFRRLGLDHRIVSAVSGAMGGSASEEFLAPAAAGE-DTFVHCPSCDYAANTEAVTYVA 245

Query: 242 IISL---NSIVEQWTAPYAATSDVHNEKL 267
                  +  VE    P   T +   E L
Sbjct: 246 AAPEAVDHPAVELLDTPDTPTIETLAEHL 274



 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 270 SLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             P+        R IE+GHIF  G KY+        G +GK   V MGSYGIG  R VAA
Sbjct: 395 PCPKCGTGLKLDRAIEIGHIFQLGRKYADAFQLDVLGQNGKPTRVTMGSYGIGVSRAVAA 454

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GE 386
           + E + D KG+ WP  +AP  +    + A   V  +   ++  +L+  G  V  D+  G 
Sbjct: 455 LAEQTADEKGLCWPAEIAPADVH--VVAAGKAVQIELALEVADQLAAAGLRVLVDERPGV 512

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             G +F  A+L+G P  ++ G +      VE+K R TG RE++ + E +    
Sbjct: 513 SPGVKFTDAELIGVPTILVAGRRSAE-GVVELKDRRTGEREELPVAEAVARLR 564


>gi|291242165|ref|XP_002740982.1| PREDICTED: prolyl-tRNA synthetase (mitochondrial)(putative)-like
           [Saccoglossus kowalevskii]
          Length = 443

 Score =  215 bits (548), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 129/415 (31%), Positives = 204/415 (49%), Gaps = 46/415 (11%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
            S +LM+  G+I Q S G+Y  LPL  ++L+ +  +I EE +  G  ++S+P + +++LW
Sbjct: 47  KSQRLMMEHGLIRQSSPGVYHLLPLALRSLEKLIRLIDEEMHSIGGTKISMPCMTTSELW 106

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKF 139
             + R+++ G E+ ++ DR+      GPTHEE +T  I      S++ LP   YQI  KF
Sbjct: 107 KATNRWETNGPELFKVEDRHGIQYCLGPTHEEAVTDLIASQGRLSHKQLPLRIYQITRKF 166

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE RPRFG++R REF MKD Y+FD   E +  +Y  +  +Y               A++
Sbjct: 167 RDEKRPRFGLLRGREFYMKDMYTFDANTENAIKTYEAVNQAYFS-------------ADT 213

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G IGG +SHE+ + ADTGE +++                             + A     
Sbjct: 214 GSIGGSMSHEYHLPADTGEDELWFCNRC-----------------------GFGAN-KEL 249

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            D+  E        N   S +GIEVGH FY GTKYS   +A +  ++ +    +MG YG+
Sbjct: 250 GDIDIEHCSHCGTTNSLESRQGIEVGHAFYLGTKYSKVFNADYSDSNNQTRTTEMGCYGL 309

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEKIYAR----LS 373
           G  R++AA IE S     I WP  +AP++I +I  K    +   +     +Y +    L 
Sbjct: 310 GVTRILAAAIEVSSTDNEIRWPHLLAPYQIYIIPSKDGSKEAGAQPIAVGLYDQIVSHLP 369

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVS-DSKVEIKHRLTGIR 426
            +  ++  DD     IG +   A  LG+P  +++G K +  +   E+ +  TG  
Sbjct: 370 HLKHEIILDDRNHMTIGKRMKEAKSLGYPFVIVIGKKALQPEPLFELCNVNTGET 424


>gi|262202217|ref|YP_003273425.1| threonyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
 gi|262085564|gb|ACY21532.1| threonyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
          Length = 691

 Score =  215 bits (548), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 68/454 (14%), Positives = 131/454 (28%), Gaps = 48/454 (10%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      +L L +    +   G+  + P G      +    R    + G
Sbjct: 251 YLEMLAEAEKRDHRKLGSELDLFS-FPDEIGSGLPVFHPKGGVIRKELEDYSRLRHAQAG 309

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              +  P     DL+  SG  D Y   M                 R        P +  +
Sbjct: 310 YEFVYTPHATKGDLFSLSGHLDWYADGMYPPMQLDEEVDADGTVRRPAIDYYLKPMNCPM 369

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +  + 
Sbjct: 370 HNLIFRSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTREQMGEE 429

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    L +    GL    +   +                        S +  +   
Sbjct: 430 -VRSLLQFVLDLLRDYGLDDFYLELSTRNPDKS----------------IGSDEAWEEAT 472

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                A YA      + +  D++    ++S   +++     F  
Sbjct: 473 EVLRAAATSFGLDLVDDPGGAAFYAPKI---SVQARDAIGRTWQMSTIQVDMMLPDRFEL 529

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           +Y+    A           V +     G++     V+   + G    W   V    I + 
Sbjct: 530 EYTGTDGAK-------HRPVMIHRALFGSIERFFGVLTEHYAGAFPAWLSPVQVVGIPVA 582

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                     D  + +   L   G     D   +++  +         P  ++ G + V 
Sbjct: 583 ------DAFADHLQGVVDTLRAAGLRAEVDHSDDRMQKKIRNHTTGKVPFMLLAGERDVE 636

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              V  + R       + + E +   +   ++ R
Sbjct: 637 AGAVSFRFRDGTQVNGVPVAEAVGIITDWVTSRR 670


>gi|253731882|ref|ZP_04866047.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724292|gb|EES93021.1| prolyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 567

 Score =  215 bits (548), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 163/237 (68%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P +++ P +AE  SH+L+L++G+I Q + GIYS+LPL  + L+N+ AI+R+E
Sbjct: 1   MKQSKVFIPTMRDVPSEAEAQSHRLLLKSGLIKQSTSGIYSYLPLATRVLNNITAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R  ++E+ +P LQ A+LW ESGR+ +YG E++RL DR+ +    GPTHEE++T I R+
Sbjct: 61  MERIDSVEILMPALQQAELWEESGRWGAYGPELMRLQDRHGRRFALGPTHEELVTSIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T +QIQ KFRDE RPRFG++R REF+MKDAYSF         +Y  M+ +
Sbjct: 121 ELKSYKQLPMTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQDMYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y RIF R+G+ + P+ A+SG IGG  +HEF+ L+  GE  +  SK   D+    E  
Sbjct: 181 YSRIFERVGINARPVVADSGAIGGSHTHEFMALSAIGEDTIVYSK-ESDYAANIEKA 236



 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 110/188 (58%), Gaps = 4/188 (2%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D       + L +   V+    GIEVG +F  GTKYS  M+ATF    GK   + MG YG
Sbjct: 382 DFRFILEGEKLSDGSGVAHFAEGIEVGQVFKLGTKYSESMNATFLDNQGKAQPLIMGCYG 441

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R ++A++E +HD  GI+WP SV PF + LI+I       R+  + +YA  +    D
Sbjct: 442 IGISRTLSAIVEQNHDDNGIVWPKSVTPFDLHLISINPKKDDQRELADALYAEFNTK-FD 500

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V +DD  E+ G +F  ADL+G PL+++VG +  S+  VE+K RLTG  E++ +++++   
Sbjct: 501 VLYDDRQERAGVKFNDADLIGLPLRIVVGKR-ASEGIVEVKERLTGDSEEVHIDDLMTVI 559

Query: 439 SHRFSNNR 446
           ++++ N +
Sbjct: 560 TNKYDNLK 567


>gi|73951033|ref|XP_857231.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 4
           [Canis familiaris]
          Length = 798

 Score =  215 bits (548), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 154/448 (34%), Gaps = 43/448 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 382 KMMKTWEKFQEEAKNRDHRKVGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLMDFIREE 439

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    E+  P + ++ LW  SG +  Y + M    D         P +      +F  
Sbjct: 440 YHRRNFTEVLSPNMFNSKLWETSGHWQHYSENMFTF-DIEKDTFALKPMNCPGHCLMFAH 498

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P       +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 499 RPRSWREMPVRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLQ 557

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  D          
Sbjct: 558 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEVELWDEAEKQLQNSL 599

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     A Y    D+   K+ D++    + +   ++    F    ++    +
Sbjct: 600 VEFGKPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRF----N 648

Query: 300 ATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T++   GK  + V +    +G++  + A++    +  G  WP  ++P ++ +I +    
Sbjct: 649 LTYRSRSGKIRNPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP-- 703

Query: 359 QVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             C     ++ +   + G     D D    +  +   A L  +   ++VG K  +++ V 
Sbjct: 704 -TCEKYALQVSSAFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKTNNAVN 762

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R   I  ++S+   I+   +   + 
Sbjct: 763 VRTRDNKIHGEISVTSAIHKLKNLKKSR 790


>gi|240172755|ref|ZP_04751414.1| prolyl-tRNA synthetase [Mycobacterium kansasii ATCC 12478]
          Length = 582

 Score =  215 bits (548), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 97/268 (36%), Positives = 145/268 (54%), Gaps = 1/268 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G +   + G+YSWLPLG + L N+  ++REE 
Sbjct: 4   RMSQLFLRTLRDDPADAEVPSHKLLIRAGYVRPIAPGLYSWLPLGLRVLRNIERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTEYGDSVFRLQDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YNSYKDFPLVLYQIQNKYRDEARPRAGILRVREFVMKDSYSFDIDSAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFD 240
            RIF RL ++ + + A SG +GG  S EF+  +  GE   V C +      + +  T   
Sbjct: 184 QRIFERLRVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRCPESGYAANVEAVITARP 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +   ++   E        T  +     +
Sbjct: 244 ETRPIDGQPEAVVHDTGDTPTIATLVEW 271



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 92/175 (52%), Gaps = 4/175 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     V ARGIE+GHIF  G KY+   SA   G DGK   + MG
Sbjct: 395 GTIEAAEVREGDPSPDGAGSLVMARGIEIGHIFQLGQKYTDAFSADVLGEDGKPVRLTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA V E  HD  G+ WP ++APF + L  I   D   R     +   L++ 
Sbjct: 455 SYGIGVSRLVAVVAEQHHDELGLRWPPAIAPFDVHL-VIANKDAEARTGAVALATELNQQ 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           G +V  DD     G +F  A+LLG P  V+VG +  +D  VE++ R +G   +++
Sbjct: 514 GVEVLLDDRQASPGVKFKDAELLGMPWIVVVG-RGWADGVVELRDRFSGQTRELA 567


>gi|239982632|ref|ZP_04705156.1| prolyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291454473|ref|ZP_06593863.1| prolyl-tRNA synthetase 1 [Streptomyces albus J1074]
 gi|291357422|gb|EFE84324.1| prolyl-tRNA synthetase 1 [Streptomyces albus J1074]
          Length = 564

 Score =  215 bits (548), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 106/262 (40%), Positives = 148/262 (56%), Gaps = 2/262 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + + + GI+SWLPLG+K LDN++ I+REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETISHKLLVRAGYVRRTAAGIWSWLPLGKKVLDNISHIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGAQEVLLPALLPKEPYEASGRWEEYGDLLFRLKDRKGADYLLGPTHEEIFTQVVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG + SY     +Y
Sbjct: 126 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTTDEGLEESYQLHRAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD--F 239
            +IF RLGL    + A SG +GG  S EF+  A  GE       +          T    
Sbjct: 186 QKIFARLGLDYRIVSAVSGAMGGSASEEFLAPAPAGEDTFADCPNCSYAANTEAVTFALA 245

Query: 240 DDIISLNSIVEQWTAPYAATSD 261
               + +  VE    P   T +
Sbjct: 246 PVEGAEHGPVEVLDTPDTPTIE 267



 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 88/177 (49%), Gaps = 6/177 (3%)

Query: 266 KLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           +  D  P         R IE+GHIF  G KY+        G  GK   V MGSYGIG  R
Sbjct: 390 EEGDPCPNCGNGLKLDRAIEIGHIFQLGRKYADTFQLDVLGQQGKPVRVTMGSYGIGVSR 449

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            VAA+ E + DG+G+ WP  VAP  +    + A   +  +   ++  +L+  G  V  DD
Sbjct: 450 AVAALAEQTADGQGLCWPAEVAPADVH--VVAAGKALQTELALEVSEKLNAAGVRVLVDD 507

Query: 384 M-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             G   G +F  A+L+G P  ++ G +  +D  VE+K R TG RE++ + E +   +
Sbjct: 508 RAGVSPGVKFTDAELIGVPKILVAGRRS-ADGIVELKDRRTGEREELPVAEAVARLT 563


>gi|114559271|ref|XP_001168925.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 8 [Pan
           troglodytes]
          Length = 701

 Score =  215 bits (548), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 147/441 (33%), Gaps = 42/441 (9%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
             +   RD      +  L     H+ S G   +LP G +  + + A IR E    G  E+
Sbjct: 294 REEAELRDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEV 351

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             PTL S  LW +SG ++ Y ++M  +    D  +   P +      +F    +S+R LP
Sbjct: 352 KTPTLFSTKLWEQSGHWEHYQEDMFAVQHITDT-LALKPMNCPAHCLMFAHRPRSWRELP 410

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                     R E      G+ R R F   DA+ F  T +               ++  L
Sbjct: 411 LRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAE-IQSCLDFLRSVYAVL 469

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G         + P G                         D           +      +
Sbjct: 470 GFSFRLA-LSTRPSGF-----------------LGDPCLWDQAEQVLKQALKEFGEPWDL 511

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    DVH   L D+L    +     ++    F    ++       +KG  G 
Sbjct: 512 NSGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPLRFD----LQYKGQAGA 560

Query: 309 -DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            +  V +    +G++  +  V+    +  G  WP  ++PF++ +I + +  +   +  ++
Sbjct: 561 LERPVLIHRAVLGSVERLLGVLA---ESCGGKWPLWLSPFQVVVIPVGSEQE---EYAKE 614

Query: 368 IYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
               L   G     D D G  +  +   A L  +  Q +VG K  S   V I+ R     
Sbjct: 615 AQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQFVVGQKEQSKRTVNIRTRDNRRL 674

Query: 427 EDMSLEEVINYASHRFSNNRP 447
            +  L E +       +   P
Sbjct: 675 GEWDLPEAVQRLVELQNTRVP 695


>gi|327398599|ref|YP_004339468.1| Prolyl-tRNA synthetase [Hippea maritima DSM 10411]
 gi|327181228|gb|AEA33409.1| Prolyl-tRNA synthetase [Hippea maritima DSM 10411]
          Length = 578

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 118/268 (44%), Positives = 165/268 (61%), Gaps = 1/268 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+  L+E+ ++A I SH L+LR G I + + GIY++LPLG + +  V+ I+REE
Sbjct: 1   MRYSESFIYTLKEDQKEAAIVSHNLLLRGGFILKLASGIYNYLPLGLRVIRKVSDIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +  +Q A+LW ESGR++ YGKE+LR+ DR D+  ++GPTHEEV+TDI R 
Sbjct: 61  MNKAGAQEILMAAIQPAELWKESGRWNDYGKELLRIKDRGDRDFVFGPTHEEVVTDIVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDELRPRFG+MR REF+MKDAYSFD    G   SY KM ++
Sbjct: 121 FVKSYKQMPLNLYQIQTKFRDELRPRFGLMRGREFIMKDAYSFDKDEAGMDVSYEKMNIA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A++G IGG  S EF+VL+ TGE ++       ++    E     
Sbjct: 181 YHNIFRRCGLAFRSVEADTGSIGGKDSEEFMVLSQTGEDEIVICDSC-EYASNVERATSI 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLF 268
                   +E           + +   F
Sbjct: 240 VEDEPAQEIELKEVATPGKQTIKDVCEF 267



 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/190 (36%), Positives = 102/190 (53%), Gaps = 3/190 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
               T+D+   K  +  P  K       RGIEVGHIF  G KYS  M+ATF   +G+   
Sbjct: 375 FECDTADLRVVKEGELCPRCKKGTLKKIRGIEVGHIFKLGQKYSKAMNATFLDENGRSVP 434

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             MG YGIG  R   A IE +HD  GIIWP S+APF+I ++++   ++   + C+ +Y +
Sbjct: 435 YYMGCYGIGIGRTAQAAIEQNHDEYGIIWPISIAPFEIEIVSLDTRNKELVEFCDILYEQ 494

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           + K G DV +DD  E+ G +    DL+G P++VIVG K     +VE+  R    ++ +  
Sbjct: 495 MKKEGFDVLYDDRDERAGIKLNDMDLIGIPIRVIVGKKAFEKGEVEVSLRRDRQKQSVEK 554

Query: 432 EEVINYASHR 441
           +EV+      
Sbjct: 555 DEVLEKVKEL 564


>gi|330800299|ref|XP_003288175.1| threonyl-tRNA synthetase [Dictyostelium purpureum]
 gi|325081805|gb|EGC35308.1| threonyl-tRNA synthetase [Dictyostelium purpureum]
          Length = 713

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 149/438 (34%), Gaps = 40/438 (9%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD         L     H  S G   +LP G +  + +   IR E +  G  E+
Sbjct: 312 MKEAALRDHRNIGRAQELF--FFHPFSPGSAFFLPHGTRIYNKLVDFIRAEYHNRGFSEV 369

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P++ S  LW +SG +  Y + M      + +     P +      +F S  +SYR LP
Sbjct: 370 ISPSVFSQKLWEQSGHWAKYSENMF-NIPVDKETFSLKPMNCPGHCLMFGSRQRSYRELP 428

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F    +  R+EL     G+ R R+F   DA+ F           N        ++   
Sbjct: 429 LRFADFGVLHRNELAGALTGLTRVRKFQQDDAHIFCTVDMIENE-INSCLEFMQHVYGIF 487

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G                   EF +   T            +    S     +       +
Sbjct: 488 G------------------FEFQLNLSTRPENFLGEISQWNEAEKSLEKALNRFGKPWQL 529

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    D+   +++D L    + +   ++    F    ++ L   +       K
Sbjct: 530 NPGDGAFYGPKIDI---QIYDCLKRAHQCATIQLD----FQLPIRFDLEYQSDDATDVKK 582

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              +   +      R++A ++E +            A             +   +   K+
Sbjct: 583 RPVIIHRAILGSVERMMAILMEHTAGKWPFWVSPRQAIVVTVA-------KQHNEYGHKV 635

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             ++S++G     D+  + IG +   A L  +   ++VG + + ++KV ++ R   +R  
Sbjct: 636 AKQISELGYYCDIDESDKTIGKKVREAQLAQYNYILVVGQEEIDNNKVNVRTRDNVVRGS 695

Query: 429 MSLEEVINY---ASHRFS 443
           +S+EE++      S  F 
Sbjct: 696 ISVEELVAEFAVLSKEFK 713


>gi|306785673|ref|ZP_07423995.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu003]
 gi|308329673|gb|EFP18524.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu003]
          Length = 582

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 101/259 (38%), Positives = 149/259 (57%), Gaps = 1/259 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ASHKL++R G I   + G+YSWLPLG + L N+  +IR+E 
Sbjct: 4   RMSELFLRTLRDDPADAEVASHKLLIRAGYIRPVAPGLYSWLPLGLRVLRNIERVIRDEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTQYGDSVFRLKDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPLTLYQIQTKYRDEARPRAGILRAREFVMKDSYSFDIDAAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFD 240
            RIF RL ++ + + A SG +GG  S EF+  + +GE   V C +      + +  T   
Sbjct: 184 QRIFDRLQVRYVIVSAVSGAMGGSASEEFLAESPSGEDAFVRCLESGYAANVEAVVTARP 243

Query: 241 DIISLNSIVEQWTAPYAAT 259
           D + ++ + E        T
Sbjct: 244 DTLPIDGLPEAVVHDTGDT 262



 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 93/174 (53%), Gaps = 4/174 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     V ARGIE+GHIF  G+KY+   +A   G DGK   + MG
Sbjct: 395 GTIEAAEVREGDPSPDGAGPLVMARGIEIGHIFQLGSKYTDAFTADVLGEDGKPVRLTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA V E  HD  G+ WP +VAPF + L  I   D   R     + A L ++
Sbjct: 455 SYGIGVSRLVAVVAEQHHDELGLRWPSTVAPFDVHL-VIANKDAQARAGATALAADLDRL 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           G +V  DD     G +F  A+LLG P  V+VG +  +D  VE++ R +G   ++
Sbjct: 514 GVEVLLDDRQASAGVKFKDAELLGMPWIVVVG-RGWADGVVELRDRFSGQTREL 566


>gi|294790672|ref|ZP_06755830.1| proline--tRNA ligase [Scardovia inopinata F0304]
 gi|294458569|gb|EFG26922.1| proline--tRNA ligase [Scardovia inopinata F0304]
          Length = 598

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 105/270 (38%), Positives = 153/270 (56%), Gaps = 6/270 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DA++ S KL++R G I +   G+YSWLPLG + L+ + AIIREE 
Sbjct: 7   RMSSLFLRTLRDDPADADVDSAKLLIRAGYIRKIGPGLYSWLPLGLRVLNKIEAIIREEI 66

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P +   + +  S R++ YG  + R  DR+    +  PTHEE+ T + +  
Sbjct: 67  NAIGAQEVHFPAMMPREPYQMSNRWEEYGDNIFRFKDRHGADYLLAPTHEEMFTLMVKDM 126

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R R+F+MKDAYSFD+  EG K +Y +   +Y
Sbjct: 127 YTSYKDLPVTLYQIQGKYRDEFRPRAGMIRGRQFVMKDAYSFDIDEEGLKKAYLQERGAY 186

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIFHRL L  + + A SGP+GG  S EF+     GE     +     + + +  T   +
Sbjct: 187 ERIFHRLDLNYVIVHAVSGPMGGSESEEFLAPMPIGEDTFALAPSGKAWNVEALTTPESE 246

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  ++  + P A   D  +    DSL
Sbjct: 247 ------PLDFSSIPAAQVKDTPDSTTIDSL 270



 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 4/186 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+        RG+E+G +F  G KYS  M       +G+   V MG
Sbjct: 408 GTVEAAEVRHGDMSPDGSGPLSFERGVEIGQVFQLGLKYSHAMGLKVLNKNGQAVPVWMG 467

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  RV++ + E+ HD KG+IWP ++AP ++ L+     D       + +  +L   
Sbjct: 468 CYGIGVSRVMSCIAETHHDDKGLIWPAAIAPAQVHLVATG-KDDRAFHIADDLLHQLEGE 526

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD      G +F  ++LLG PL ++VG   V++  VEI++R +G  + + LE+ 
Sbjct: 527 GIEVLYDDRLKVSPGVKFKDSELLGMPLVLVVGRDAVNNGTVEIRNRRSGQVQIVPLEQA 586

Query: 435 INYASH 440
            +    
Sbjct: 587 FHTVKE 592


>gi|260187861|ref|ZP_05765335.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A]
 gi|289448507|ref|ZP_06438251.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis CPHL_A]
 gi|289421465|gb|EFD18666.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis CPHL_A]
          Length = 582

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 101/259 (38%), Positives = 149/259 (57%), Gaps = 1/259 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ASHKL++R G I   + G+YSWLPLG + L N+  +IR+E 
Sbjct: 4   RMSELFLRTLRDDPADAEVASHKLLIRAGYIRPVAPGLYSWLPLGLRVLRNIERVIRDEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTQYGDSVFRLKDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPLTLYQIQTKYRDEARPRAGILRAREFVMKDSYSFDIDAAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFD 240
            RIF RL ++ + + A SG +GG  S EF+  + +GE   V C +      + +  T   
Sbjct: 184 QRIFDRLQVRYVIVSAVSGAMGGSASEEFLAESPSGEDAFVRCLESGYAANVEAVVTARP 243

Query: 241 DIISLNSIVEQWTAPYAAT 259
           D + ++ + E        T
Sbjct: 244 DTLPIDGLPEAVVHDTGDT 262



 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 93/174 (53%), Gaps = 4/174 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     V ARGIE+GHIF  G+KY+   +A   G DGK   + MG
Sbjct: 395 GTIEAAEVREGDPSPDGAGPLVMARGIEIGHIFQLGSKYTDAFTADVLGEDGKPVRLTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA V E  HD  G+ WP +VAPF + L  I   D   R     + A L ++
Sbjct: 455 SYGIGVSRLVAVVAEQHHDELGLRWPSTVAPFDVHL-VIANKDAQARAGATALAADLDRL 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           G +V  DD     G +F  A+LLG P  V+VG +  +D  VE++ R +G   ++
Sbjct: 514 GVEVLLDDRQASPGVKFKDAELLGMPWIVVVG-RGWADGVVELRDRFSGQTREL 566


>gi|15609982|ref|NP_217361.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis H37Rv]
 gi|148662686|ref|YP_001284209.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148824035|ref|YP_001288789.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis F11]
 gi|161350062|ref|NP_337423.2| prolyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|167967198|ref|ZP_02549475.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|215404817|ref|ZP_03416998.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|215412677|ref|ZP_03421395.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|215428284|ref|ZP_03426203.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis T92]
 gi|215431786|ref|ZP_03429705.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|218754593|ref|ZP_03533389.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis GM 1503]
 gi|219558862|ref|ZP_03537938.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis T17]
 gi|253798069|ref|YP_003031070.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis KZN 1435]
 gi|254232940|ref|ZP_04926267.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis C]
 gi|254365491|ref|ZP_04981536.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551909|ref|ZP_05142356.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260201976|ref|ZP_05769467.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|260206156|ref|ZP_05773647.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis K85]
 gi|289444396|ref|ZP_06434140.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289553367|ref|ZP_06442577.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis KZN 605]
 gi|289571033|ref|ZP_06451260.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis T17]
 gi|289575546|ref|ZP_06455773.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis K85]
 gi|289746643|ref|ZP_06506021.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289751506|ref|ZP_06510884.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis T92]
 gi|289754953|ref|ZP_06514331.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289763021|ref|ZP_06522399.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis GM 1503]
 gi|297635458|ref|ZP_06953238.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis KZN 4207]
 gi|297732457|ref|ZP_06961575.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis KZN R506]
 gi|298526313|ref|ZP_07013722.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|306777129|ref|ZP_07415466.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu001]
 gi|306781035|ref|ZP_07419372.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu002]
 gi|306789713|ref|ZP_07428035.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu004]
 gi|306794347|ref|ZP_07432649.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu005]
 gi|306798770|ref|ZP_07437072.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu006]
 gi|306804616|ref|ZP_07441284.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu008]
 gi|306807350|ref|ZP_07444018.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu007]
 gi|306968909|ref|ZP_07481570.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu009]
 gi|306973245|ref|ZP_07485906.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu010]
 gi|307080954|ref|ZP_07490124.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu011]
 gi|307085549|ref|ZP_07494662.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu012]
 gi|313659789|ref|ZP_07816669.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis KZN V2475]
 gi|2501040|sp|O05814|SYP_MYCTU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|2078014|emb|CAB08445.1| PROBABLE PROLYL-TRNA SYNTHETASE PROS (PROLINE--TRNA LIGASE) (PRORS)
           (GLOBAL RNA SYNTHESIS FACTOR) (PROLINE TRANSLASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|124601999|gb|EAY61009.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis C]
 gi|134151004|gb|EBA43049.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506838|gb|ABQ74647.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148722562|gb|ABR07187.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis F11]
 gi|253319572|gb|ACT24175.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis KZN 1435]
 gi|289417315|gb|EFD14555.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289437999|gb|EFD20492.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis KZN 605]
 gi|289539977|gb|EFD44555.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis K85]
 gi|289544787|gb|EFD48435.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis T17]
 gi|289687171|gb|EFD54659.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289692093|gb|EFD59522.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis T92]
 gi|289695540|gb|EFD62969.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289710527|gb|EFD74543.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis GM 1503]
 gi|298496107|gb|EFI31401.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|308214498|gb|EFO73897.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu001]
 gi|308326143|gb|EFP14994.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu002]
 gi|308333812|gb|EFP22663.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu004]
 gi|308337323|gb|EFP26174.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu005]
 gi|308340981|gb|EFP29832.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu006]
 gi|308346273|gb|EFP35124.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu007]
 gi|308348796|gb|EFP37647.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu008]
 gi|308353522|gb|EFP42373.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu009]
 gi|308357363|gb|EFP46214.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu010]
 gi|308361316|gb|EFP50167.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu011]
 gi|308364916|gb|EFP53767.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis SUMu012]
 gi|323718544|gb|EGB27714.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis CDC1551A]
 gi|326904458|gb|EGE51391.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis W-148]
 gi|328457842|gb|AEB03265.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis KZN 4207]
          Length = 582

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 101/259 (38%), Positives = 149/259 (57%), Gaps = 1/259 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ASHKL++R G I   + G+YSWLPLG + L N+  +IR+E 
Sbjct: 4   RMSELFLRTLRDDPADAEVASHKLLIRAGYIRPVAPGLYSWLPLGLRVLRNIERVIRDEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTQYGDSVFRLKDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPLTLYQIQTKYRDEARPRAGILRAREFVMKDSYSFDIDAAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFD 240
            RIF RL ++ + + A SG +GG  S EF+  + +GE   V C +      + +  T   
Sbjct: 184 QRIFDRLQVRYVIVSAVSGAMGGSASEEFLAESPSGEDAFVRCLESGYAANVEAVVTARP 243

Query: 241 DIISLNSIVEQWTAPYAAT 259
           D + ++ + E        T
Sbjct: 244 DTLPIDGLPEAVVHDTGDT 262



 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 93/174 (53%), Gaps = 4/174 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     V ARGIE+GHIF  G+KY+   +A   G DGK   + MG
Sbjct: 395 GTIEAAEVREGDPSPDGAGPLVMARGIEIGHIFQLGSKYTDAFTADVLGEDGKPVRLTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA V E  HD  G+ WP +VAPF + L  I   D   R     + A L ++
Sbjct: 455 SYGIGVSRLVAVVAEQHHDELGLRWPSTVAPFDVHL-VIANKDAQARAGATALAADLDRL 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           G +V  DD     G +F  A+LLG P  V+VG +  +D  VE++ R +G   ++
Sbjct: 514 GVEVLLDDRQASPGVKFKDAELLGMPWIVVVG-RGWADGVVELRDRFSGQTREL 566


>gi|94968092|ref|YP_590140.1| prolyl-tRNA synthetase [Candidatus Koribacter versatilis Ellin345]
 gi|122986393|sp|Q1IST4|SYP_ACIBL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94550142|gb|ABF40066.1| prolyl-tRNA synthetase [Candidatus Koribacter versatilis Ellin345]
          Length = 587

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 106/236 (44%), Positives = 146/236 (61%), Gaps = 2/236 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+P L+E P DAE+ASHK ++R G I Q + GIYS+L LG ++++ +  I+REE 
Sbjct: 3   RWSKLFIPTLREAPADAEVASHKFLVRAGYIRQLAAGIYSYLFLGNRSMNKIIGIVREEM 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           ++ G  E  +P L   ++W  SGR+   G  M RL DR    +  G THEE+MT+I R  
Sbjct: 63  DKIG-QEYYLPALNPREIWEASGRWAVMGDNMFRLKDRKGAELCLGMTHEEIMTEIARKE 121

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SY+ LP  +YQIQ KFRDE RPR G++R R+F+MKD+YSFD+   G   SY K   +Y
Sbjct: 122 LRSYKQLPQIWYQIQTKFRDEPRPRSGLLRVRQFIMKDSYSFDIDAAGLDISYQKHHDAY 181

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            RIF R GLK + + A+SG +GG  S EF+V  D GE  V    +   +    E  
Sbjct: 182 CRIFDRCGLKYVVVHADSGAMGGSGSQEFMVYTDAGEDLVASCANCS-YAANVEKA 236



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 3/196 (1%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
              +  +  ++D+      +  P         + +E+GHIF  G KY+  M A     DG
Sbjct: 390 PGESFQFTGSADLRMVAEGEPCPNCGHALKVGKTVEIGHIFKLGYKYTDAMGARVLDKDG 449

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           K+    MGSYGIG  R++ A +E S+D  G   P  +APF++ +      D+      E+
Sbjct: 450 KEVMPIMGSYGIGMERILTASVEQSNDDNGFWLPAQIAPFEVVVTPTNVSDEKLAKGAEE 509

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I A+L   G DV  DD  E+ G +F  ADL+G P+++ VG KFV   KVE+ HR T    
Sbjct: 510 IAAKLEAAGFDVILDDRDERPGVKFKDADLVGIPVRINVGKKFVE-GKVEVIHRSTRESL 568

Query: 428 DMSLEEVINYASHRFS 443
           D ++ E++   +    
Sbjct: 569 DATIPEIVEKIAAWLK 584


>gi|268679949|ref|YP_003304380.1| prolyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617980|gb|ACZ12345.1| prolyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
          Length = 567

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 109/287 (37%), Positives = 159/287 (55%), Gaps = 4/287 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P  ++ P+DA + SH+ ++R G I Q   G+Y++LP+G+  LD +  +++EE
Sbjct: 1   MKFSKLYAPTTKDAPKDATLPSHQYLVRGGFIVQVGSGLYNFLPMGKIVLDKIRNVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + TGA E+ +  +  A+LW +SGRYD +GKE+ R+ DR +   + GPTHEEV+ DI R+
Sbjct: 61  MDETGAQEIQMGVVSPAELWKQSGRYDVFGKELCRIKDRKENEFVLGPTHEEVVVDIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPRFG++R REF+MKD YSF       K  ++ M  +
Sbjct: 121 RINSYKQLPLHLYQITTKFRDEARPRFGLLRGREFIMKDGYSFHEDEASMKAEFDVMEQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF+RLGL    + A+SG IGG  S EF+VLA  GE  +   +               
Sbjct: 181 YTKIFNRLGLDFRAVEADSGAIGGSGSKEFMVLAQNGEDDIVVCEQCSYAANIEAAKRAP 240

Query: 241 DIISLNSIVEQWTAPYAAT----SDVHNEKLFDSLPENKRVSARGIE 283
              +L +     +           DV N    D+    K V  + I 
Sbjct: 241 KTTTLEAPEANLSKFKTPDMKTIEDVCNFFKVDAFYSIKAVVKKAIY 287



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 102/233 (43%), Gaps = 6/233 (2%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN-----EKLFDS 270
            G   + C K ++D  +            ++  +              +     E    +
Sbjct: 336 IGPVGLECVKFYIDLELKEAKNLICGANEVDYHMVGVGMFNFKEERYADLVAVKEGDVCA 395

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
               +    +GIEVGHIF  G KY+  M ATF   +GK     MG YG+G  R+VA +IE
Sbjct: 396 CCGGRLGITKGIEVGHIFQLGQKYAKAMGATFLDKNGKAQPFYMGCYGVGVSRLVAVMIE 455

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +SHD KG IW    AP+ + +I   + D+      E+IY+ L +    V  DD  E+ G 
Sbjct: 456 ASHDEKGCIWNKQTAPYLLDIIVSNSKDEAQSAYAEEIYSALMQERLSVLLDDRNERFGF 515

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +    +L+G P  +IVG K + +  VEI  R T  +  +  EE +       +
Sbjct: 516 KMKDYELIGLPYALIVG-KELEEGFVEIVERKTLEKTVVKKEEALLKLRELLA 567


>gi|116075451|ref|ZP_01472711.1| threonyl-tRNA synthetase [Synechococcus sp. RS9916]
 gi|116067648|gb|EAU73402.1| threonyl-tRNA synthetase [Synechococcus sp. RS9916]
          Length = 609

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/436 (15%), Positives = 133/436 (30%), Gaps = 36/436 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD       L L + +  +   G+  W P G +    +    R+     G   + 
Sbjct: 203 EEALRRDHRRIGTDLDLFS-IEDEAGAGLVFWHPRGARMRLLIEDFWRQAHFEGGYELLY 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +    LW  SG  D Y + M      +++     P +       + S ++SYR LP 
Sbjct: 262 TPHVADISLWKTSGHLDFYSESMFGPMVVDEREYQLKPMNCPFHVLTYASTLRSYRELPI 321

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + ++   +R E      G+MR R F   DA+ F L  + S     ++     RI     
Sbjct: 322 RWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCLPEQISDE-ILRILDLTERILSTFD 380

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            K+  +   + P                           D          +       + 
Sbjct: 381 FKNYEINLSTRPEKS-----------------IGDDAVWDLATKGLIEALERKGWDYKVD 423

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E   A Y    D+   K+ D++    + S   ++    F    ++ L   A    +  + 
Sbjct: 424 EGGGAFYGPKIDL---KIEDAIGRMWQCSTIQLD----FNLPERFKLDYVAA--DSSKQR 474

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             +   +      R    + E+                              +   E + 
Sbjct: 475 PIMIHRAIFGSLERFFGIMTENYAGDFPFWLAPEQIRLLPVT-------DEVQSYAESLC 527

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L   G     D  GE++G      + +  P+  ++G+K    +   ++ R  G    +
Sbjct: 528 DQLKAAGVRASVDRSGERLGKLIRTGEKMKIPVLAVIGAKEAEQASASLRSRRDGDLGLV 587

Query: 430 SLEEVINYASHRFSNN 445
             + +I  A     N 
Sbjct: 588 GADALIEAARQANQNR 603


>gi|295396369|ref|ZP_06806535.1| proline--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970809|gb|EFG46718.1| proline--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 609

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 95/240 (39%), Positives = 146/240 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E P DA++ SHKL+ R   I + + GIY+WLPLG + LD V AI+R+E 
Sbjct: 4   RMSTLFVRTLKEEPADADVKSHKLLHRASYIRRSAPGIYTWLPLGLRVLDKVEAIVRDEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           ++ G+ E+  P L  A+ + +SGR++++G+ + RL DR     +  PTHEEV T + +  
Sbjct: 64  SKAGSQEVHFPALLPAEPYEKSGRWEAFGEGIFRLQDRKKADYLLAPTHEEVFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + YQIQ K+RDE RPR G++R REF+MKDAYSFD    G   +Y KM  +Y
Sbjct: 124 YSSYKDLPASLYQIQTKYRDEARPRAGLLRGREFIMKDAYSFDTDDAGLDAAYEKMRKAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + +++RL L  + + A  G +GG  +HEF+  ++ GE     +       + +  T   +
Sbjct: 184 INVYNRLQLPFVMVEATPGAMGGSGTHEFLYPSEVGEDTYVRTDGGYAANVEAVTTVVPE 243



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 101/201 (50%), Gaps = 11/201 (5%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +       D  P+   +   ARG+E+G IF  GT+Y+  +  +    +GK   V MG
Sbjct: 409 EFIEAAEVVAGDPAPDGSGELQLARGVEIGQIFKLGTRYAEALGLSVLDENGKARVVTMG 468

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+A + E   D KG++WP ++AP  + ++     D    D  E++ A + K 
Sbjct: 469 SYGIGVSRVLACIAEEHADDKGLVWPANLAPADVHIVATG-KDAQVFDVAEELTAEVEKA 527

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE-- 432
           G  V  DD      G +F  A+LLG P  V+VG + + D  VE++ R TG   ++ ++  
Sbjct: 528 GYTVLLDDRPKVSPGMKFGDAELLGMPTIVVVG-RGLKDGVVELRDRATGETTNLPVDTA 586

Query: 433 --EVINYASHRFS--NNRPVL 449
             ++++  + +    NN  +L
Sbjct: 587 GQKIVDAIAEKLDAINNIELL 607


>gi|284929344|ref|YP_003421866.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [cyanobacterium
           UCYN-A]
 gi|284809788|gb|ADB95485.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [cyanobacterium
           UCYN-A]
          Length = 608

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 150/442 (33%), Gaps = 39/442 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L     +    G+  W P G      +   +REEQ + G + + 
Sbjct: 196 EEALKRDHRKLGKELGLFI-FSNSVGPGLPLWTPKGTIIRSVLENFLREEQLKRGYLPVV 254

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG + +Y ++M  L   N+ A       +  P +      I++S +KS
Sbjct: 255 TPHIGKVDLFKTSGHWQNYKEDMFPLMSDNEVARGEEIGFVLKPMNCPFHIQIYKSDLKS 314

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    +    +R E     G +        D     +TP+     +  +    L +
Sbjct: 315 YRDLPVRLAEFGTVYRYEKSGELGGLTRVRGFTVDDSHLFVTPDQLDDEFLNVVNLILSV 374

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F  L LK+   R                  D    +   S +  +    +       +  
Sbjct: 375 FENLQLKNFKARLS--------------FRDPSSNKYIGSDEVWEKSQNAIYRAVKMLNI 420

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E   A Y    D       D+L    ++    ++               +  + G
Sbjct: 421 DYFEAEGEAAFYGPKLDFI---FQDALDREWQLGTVQVDYNLP--------ERFNLEYIG 469

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G  H    +     G++  +  ++    +     +P  ++P ++ ++ +     +  D
Sbjct: 470 EKGDKHRPIMIHRAPFGSLERLIGILI---EEYVGDFPLWLSPVQVRILPV---SDLYLD 523

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   +         D  GE++G      +    P+  I+GSK +  + + I+ R +
Sbjct: 524 YAKGVMQTMLMSKIRAEVDTSGERLGKMIRKGEKEKIPVMAIIGSKEMETNSLNIRTRKS 583

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    M + + +       SN+
Sbjct: 584 GELGLMPINDFMKSILETISNH 605


>gi|326382934|ref|ZP_08204624.1| prolyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198524|gb|EGD55708.1| prolyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
          Length = 576

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 105/271 (38%), Positives = 149/271 (54%), Gaps = 5/271 (1%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+++P DAE+ SHKL++R G I + + GIY WLPLG K    V  ++REE +
Sbjct: 1   MSNLFLRTLRDDPADAEVPSHKLLVRAGYIRRAAPGIYEWLPLGLKVFRAVENLVREEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+ +P L   D +  +GR+  YG  + R+ DR    M+ GPTHEE+ T + +   
Sbjct: 61  AMGAQEILLPALLPRDPYETTGRWTEYGPALFRVKDRKGADMMLGPTHEEIFTQLVKGEY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G + SY+    +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEERPRAGLLRGREFVMKDSYSFDIDDAGLQASYDAHRAAYQ 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF RLG+K + + A SG +GG  S EF+   + GE   F       +    E       
Sbjct: 181 RIFDRLGVKYVIVAATSGAMGGSASEEFLAECEVGE-DTFVRSTESGYAANVEAVVTPAP 239

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
             +         P A   D  +    D+L +
Sbjct: 240 APIPLD----GQPAAVVHDTGDTPTIDTLVD 266



 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/183 (33%), Positives = 93/183 (50%), Gaps = 4/183 (2%)

Query: 258 ATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +    +  D  P+ K V    +GIE+GHIF  G KY+   +    G +GK     MG
Sbjct: 390 GVIEAAEVRAGDPSPDGKGVLETAKGIEIGHIFQLGRKYTDAFAFDVLGENGKPVRPTMG 449

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R+VA + E  HD KG+ WP  VAPF + L  I   D+      +++ A L   
Sbjct: 450 SYGLGVSRMVAVLAEQLHDEKGLRWPREVAPFDVHL-VIANKDEAAVAGAQRLAADLDAA 508

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V +DD     G +F  A+LLG P+ V+VG +  +D  +EI+ RL+G      ++  +
Sbjct: 509 GVSVLFDDRKASPGVKFKDAELLGMPVVVVVG-RGWADGTIEIRDRLSGETTAAPVDGAV 567

Query: 436 NYA 438
           +  
Sbjct: 568 DAV 570


>gi|164657235|ref|XP_001729744.1| hypothetical protein MGL_3288 [Malassezia globosa CBS 7966]
 gi|159103637|gb|EDP42530.1| hypothetical protein MGL_3288 [Malassezia globosa CBS 7966]
          Length = 635

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/451 (15%), Positives = 141/451 (31%), Gaps = 40/451 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +  L   M H  S G   WLP G +  + +   I+ E  
Sbjct: 210 MTEYKHFLAEAAKRDHRRIGREQELF--MFHDLSPGSCFWLPHGARIYNTLQDFIKSEYR 267

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW  SG + +Y  +M  L+   +      P +      +F S  
Sbjct: 268 KRGFDEVISPNMYNSKLWETSGHWANYKDDMFVLSVDKET-FALKPMNCPGHCLMFASRD 326

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP  F    +  R+E      G+ R R F+  DA+ F    +      N  F   
Sbjct: 327 RSYKELPLRFADFGVIHRNEASGALSGLTRVRRFVQDDAHIFCRASQIEDEMINC-FDFL 385

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G         + P       E    A+                          
Sbjct: 386 QTVYGHFGFSFKM-ELSTRPEKHLGDVETWDAAEKRLASALDRF---------------- 428

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     +     A Y    D+    + D++    + +   ++    F    ++    +  
Sbjct: 429 VPGRWELNPGDGAFYGPKIDI---TISDAMRREHQCATIQLD----FQLPQRF----NLE 477

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG-KGIIWPDSVAPFKISLINIKAHDQV 360
           +K   G     +     +   R V   +E                      + +    Q 
Sbjct: 478 YKTPQGGAEADKHTERPVMIHRAVVGSLERFIAILIENFAGKWPFWLSPRQVLVVPVTQS 537

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  E++ A L   G     D     +  +    +L  +    +VG +      V +++
Sbjct: 538 VYEYAEEVRALLWDRGFFADADLSDNTLNKKIRNGELAQYNFVFVVGHEEKETRSVNVRN 597

Query: 421 RLT------GIREDMSLEEVINYASHRFSNN 445
           R        G  + + L++++        + 
Sbjct: 598 RDNDPKVMKGKTDTIKLDDILAKLQKLKESR 628


>gi|300173545|ref|YP_003772711.1| threonyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887924|emb|CBL91892.1| Threonyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
          Length = 655

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/430 (16%), Positives = 144/430 (33%), Gaps = 35/430 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
              +   RD       L L      +   G+  WLP G      V   I +++   G   
Sbjct: 238 RREEAKERDHRTIGRDLDLF-FTSQEVGSGLPVWLPNGATIRRQVERYITDKELANGYQH 296

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRN 127
           +  P L + +L+  SG +D Y ++M    D  D       P +      +F+   +SYR 
Sbjct: 297 VYTPVLSNLNLYKTSGHWDHYREDMFPPMDMGDGEFLELRPMNCPSHIMVFKHKPRSYRE 356

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP    ++ +  R E       +     +  +     + PE  +  +  +    + ++  
Sbjct: 357 LPIRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVEPEKIEEEFKSILTMMMAVYRD 416

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS-ENTDFDDIISLN 246
             +     R                  D   T+ +   D M     +   +  DD+    
Sbjct: 417 FNITDYRFRLS--------------YRDPKNTEKYFDDDEMWEKSQAQLKSAMDDLKLDY 462

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   A Y    DV  +    +L   + +S   ++    F    ++      T+ GAD
Sbjct: 463 YEAEGEAAFYGPKLDVQTKT---ALGNEETMSTIQLD----FLLPERFD----LTYIGAD 511

Query: 307 GKDHYV--QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           G+D++    +    +G M    A +   + G    W   ++P ++ +I +        + 
Sbjct: 512 GQDNHRPVMLHRGIVGTMERFTAYLIEMYKGAFPTW---LSPLQVQIIPVNLG--AHGEY 566

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +  +L  VG     +    ++G     A     P  +++G   V    V ++     
Sbjct: 567 ADGVQKKLQAVGLRANVETKEAKMGYLIREAQTNKIPYTLVLGDSEVDAQTVTVRKYGEE 626

Query: 425 IREDMSLEEV 434
             + MS  + 
Sbjct: 627 KTQTMSFIDF 636


>gi|41409011|ref|NP_961847.1| prolyl-tRNA synthetase [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|81831677|sp|Q73VU8|SYP_MYCPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|41397370|gb|AAS05230.1| ProS [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 582

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 185/436 (42%), Gaps = 52/436 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I   + G+YSWLPLG + L  +  I+REE 
Sbjct: 4   RMSQLFLRTLRDDPADAEVPSHKLLIRAGYIRPVAPGLYSWLPLGLRVLRRIEHIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYEATNRWTEYGDSVFRLQDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPVLLYQIQNKYRDEARPRAGILRVREFVMKDSYSFDIDDAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFD 240
            RIF RL ++ + + A SG +GG  S EF+  +  GE   V C +      + +  T   
Sbjct: 184 QRIFARLQVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRCLESGYAANVEAVITARP 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D       VE    P A   D  +     +L +    +  G  V             +  
Sbjct: 244 D----PQPVEGL--PEAVVHDTGDTPTIATLVDWANRAGLGRAVTAADTL-----KNVLL 292

Query: 301 TFKGADGKDHYVQMGSYGIGA--MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +   G    + +G  G      + + A +E +          +  PF +         
Sbjct: 293 KVRQPGGDWELLAIGLPGDREVDDKRLGAALEPAEYVLLDDADFARYPFLVKGYIGPK-- 350

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDM-----------GEQIGSQFAVADLLGFPLQVIVG 407
                        L   G     D              E  G       ++G    ++ G
Sbjct: 351 ------------ALKDNGVRYLVDPRVVDGTSWITGADE-PGR-----HVVG----LVAG 388

Query: 408 SKFVSDSKV---EIKH 420
             F +D  +   E++ 
Sbjct: 389 RDFTADGTIEAAEVRD 404



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 91/175 (52%), Gaps = 4/175 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     VSARGIEV HIF  G KY+   +A   G DGK   + MG
Sbjct: 395 GTIEAAEVRDGDPSPDGAGPLVSARGIEVAHIFQLGRKYTDAFTADVLGEDGKPVRLTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R+VA + E  HD  G+ WP SVAPF + L  I   D   R     +   L ++
Sbjct: 455 SYGLGVSRMVAVIAEQHHDELGLRWPASVAPFDVHL-VIANKDAQARAGATALADDLDRL 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           G +V  DD     G +F  A+LLG P  V+VG +  +D  VE++ R  G   +++
Sbjct: 514 GVEVLLDDRQASPGVKFKDAELLGVPWIVVVG-RGWADGVVELRDRFAGQTRELA 567


>gi|254819680|ref|ZP_05224681.1| prolyl-tRNA synthetase [Mycobacterium intracellulare ATCC 13950]
          Length = 583

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 121/436 (27%), Positives = 186/436 (42%), Gaps = 52/436 (11%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ASHKL++R G I   + G+YSWLPLG + L  +  I+REE 
Sbjct: 4   RMSQLFLRTLRDDPADAEVASHKLLIRAGYIRPVAPGLYSWLPLGLRVLRRIEGIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYEATNRWTEYGDSVFRLKDRRGSDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REFLMKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPVLLYQIQNKYRDEARPRAGILRVREFLMKDSYSFDVDDAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFD 240
            RIF RL ++ + + A SG +GG  S EF+  +  GE   V C +      + +  T   
Sbjct: 184 QRIFARLQVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRCLESGYAANVEAVVTSRP 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +   ++        P A   D  +     +L +    +  G  V             +  
Sbjct: 244 EAQPID------GLPEAVVHDTGDTPTIATLVDWANTADLGRTVTAADTL-----KNVLL 292

Query: 301 TFKGADGKDHYVQMGSYGIGA--MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +   G    + +G  G      + + A +E +          +  PF +         
Sbjct: 293 KVREPGGDWELLAIGLPGDREVDDKRLGAALEPAEYAMLDDADFAKYPFLVKGYIGPK-- 350

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDM-----------GEQIGSQFAVADLLGFPLQVIVG 407
                        L   G     D              E  G       ++G    ++ G
Sbjct: 351 ------------ALRDNGVRYLVDPRVVDGTSWITGADE-PGR-----HVVG----LVAG 388

Query: 408 SKFVSDSKV---EIKH 420
             F +D  +   E++ 
Sbjct: 389 RDFTADGTIEAAEVRD 404



 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 67/175 (38%), Positives = 92/175 (52%), Gaps = 4/175 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     VSARGIEV HIF  G KY+   +A   G DGK   + MG
Sbjct: 395 GTIEAAEVRDGDPSPDGAGPLVSARGIEVAHIFQLGRKYTDAFTADVLGEDGKPVRLTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R+VA + E  HD  G+ WP SVAPF + L  I   D   R    ++   L ++
Sbjct: 455 SYGLGVSRMVAVIAEQHHDELGLRWPSSVAPFDVHL-VIANKDDRARTGATELAGELDRL 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           G DV  DD     G +F  A+LLG P  V+VG +  +D  VE++ R  G   +++
Sbjct: 514 GVDVLLDDRQASPGVKFKDAELLGVPWIVVVG-RGWADGVVELRDRFGGQTRELA 567


>gi|300726434|ref|ZP_07059882.1| threonine--tRNA ligase [Prevotella bryantii B14]
 gi|299776282|gb|EFI72844.1| threonine--tRNA ligase [Prevotella bryantii B14]
          Length = 654

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 147/444 (33%), Gaps = 36/444 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L      +  KG+  WLP G +    +  ++R      
Sbjct: 232 EYLVMLEEAKKRDHRKIGKEMELFM-FSERVGKGLPIWLPKGTQLRLRLQELLRRVLKPY 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + S +L++ SG +  YGK+  +       D+  +  P +     +I+    
Sbjct: 291 NYQEVITPGIGSKNLYITSGHWAHYGKDAFQPIHTPEEDEEYMLKPMNCPHHCEIYARKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    FR E      G+ R R F   DA+ F   P+  K  +       
Sbjct: 351 RSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIFVR-PDQVKAEFENNIDII 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            ++F   G      +                       +   S +  +    +      +
Sbjct: 410 QKVFSIFGFNDYEAQISLRD-------------PKDTEKYIGSDEIWEESQNAIREACKE 456

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                   E   A Y    D     + D++    ++    ++                  
Sbjct: 457 KGLKAVEEEGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFKLE 505

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +     G++    AV+     G+  +W           + I    + 
Sbjct: 506 YTDVDNTKKTPVMIHRAPFGSLERFTAVLIEHTAGRFPLW------LIPDQVAILPISEK 559

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+ A L K     + DD  E++G +    +L   P  VIVG K      V ++ 
Sbjct: 560 YNDYAKKVKAYLDKHDVRGYIDDRNEKVGRKIRDNELKRVPYMVIVGEKEAEGGLVSMRK 619

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           +  G +  M++EE     +   + 
Sbjct: 620 QGGGDQASMTMEEFAKRINEEVAE 643


>gi|254776130|ref|ZP_05217646.1| prolyl-tRNA synthetase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 582

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 97/241 (40%), Positives = 138/241 (57%), Gaps = 1/241 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I   + G+YSWLPLG + L  +  I+REE 
Sbjct: 4   RMSQLFLRTLRDDPADAEVPSHKLLIRAGYIRPVAPGLYSWLPLGLRVLRRIEHIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYEATNRWTEYGDSVFRLQDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPVLLYQIQNKYRDEARPRAGILRVREFVMKDSYSFDIDDAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFD 240
            RIF RL ++ + + A SG +GG  S EF+  +  GE   V C +      + +  T   
Sbjct: 184 QRIFARLQVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRCLESGYAANVEAVITARP 243

Query: 241 D 241
           D
Sbjct: 244 D 244



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 91/175 (52%), Gaps = 4/175 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     VSARGIEV HIF  G KY+   +A   G DGK   + MG
Sbjct: 395 GTIEAAEVRDGDPSPDGAGPLVSARGIEVAHIFQLGRKYTDAFTADVLGEDGKPVRLTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R+VA + E  HD  G+ WP SVAPF + L  I   D   R     +   L ++
Sbjct: 455 SYGLGVSRMVAVIAEQHHDELGLRWPASVAPFDVHL-VIANKDAQARAGATALADDLDRL 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           G +V  DD     G +F  A+LLG P  V+VG +  +D  VE++ R  G   +++
Sbjct: 514 GVEVLLDDRQASPGVKFKDAELLGVPWIVVVG-RGWADGVVELRDRFAGQTRELA 567


>gi|118463800|ref|YP_882877.1| prolyl-tRNA synthetase [Mycobacterium avium 104]
 gi|152112931|sp|A0QIY9|SYP_MYCA1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118165087|gb|ABK65984.1| prolyl-tRNA synthetase [Mycobacterium avium 104]
          Length = 582

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 97/241 (40%), Positives = 138/241 (57%), Gaps = 1/241 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I   + G+YSWLPLG + L  +  I+REE 
Sbjct: 4   RMSQLFLRTLRDDPADAEVPSHKLLIRAGYIRPVAPGLYSWLPLGLRVLRRIEHIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYEATNRWTEYGDSVFRLQDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YSSYKDFPVLLYQIQNKYRDEARPRAGILRVREFVMKDSYSFDIDDAGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFD 240
            RIF RL ++ + + A SG +GG  S EF+  +  GE   V C +      + +  T   
Sbjct: 184 QRIFARLQVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRCLESGYAANVEAVITARP 243

Query: 241 D 241
           D
Sbjct: 244 D 244



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 91/175 (52%), Gaps = 4/175 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     VSARGIEV HIF  G KY+   +A   G DGK   + MG
Sbjct: 395 GTIEAAEVRDGDPSPDGAGPLVSARGIEVAHIFQLGRKYTDAFTADVLGEDGKPVRLTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R+VA + E  HD  G+ WP SVAPF + L  I   D   R     +   L ++
Sbjct: 455 SYGLGVSRMVAVIAEQHHDELGLRWPASVAPFDVHL-VIANKDAQARAGATALADDLDRL 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           G +V  DD     G +F  A+LLG P  V+VG +  +D  VE++ R  G   +++
Sbjct: 514 GVEVLLDDRQASPGVKFKDAELLGVPWIVVVG-RGWADGVVELRDRFAGQTRELA 567


>gi|315226277|ref|ZP_07868065.1| proline--tRNA ligase [Parascardovia denticolens DSM 10105]
 gi|315120409|gb|EFT83541.1| proline--tRNA ligase [Parascardovia denticolens DSM 10105]
          Length = 590

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 106/283 (37%), Positives = 153/283 (54%), Gaps = 2/283 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+++P DA++ S KL++R G I +   G+YSWLPLG K L+ + AIIREE N
Sbjct: 1   MSTLFLRTLRDDPADADVDSAKLLIRAGYIRKIGPGLYSWLPLGLKVLNKIEAIIREEIN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P +   + +  S R++ YG  + R  DR+    +  PTHEE+ T + +   
Sbjct: 61  ALGAQEVHFPAMMPREPYQMSNRWEEYGDNIFRFKDRHGADYLLAPTHEEMFTLMVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R R+F+MKDAYSFD+  EG K SY     +Y 
Sbjct: 121 TSYKDLPVTLYQIQGKYRDEFRPRAGMIRGRQFVMKDAYSFDIDEEGLKKSYLAERAAYE 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIFHRL +  + + A SGP+GG  S EF+     GE     +     + + +  T   D 
Sbjct: 181 RIFHRLAVDYVIVHAVSGPMGGSESEEFLAPLPIGEDTFALAPSGKAWNVEALTTPAMDP 240

Query: 243 ISLNSIVEQWTA--PYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +  +          P + T D    +L  S P     +    +
Sbjct: 241 VDYSQTPAATVVDTPDSPTIDSLVSQLNASSPREDGRAWAASD 283



 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 89/172 (51%), Gaps = 2/172 (1%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   RG+E+G +F  G KYS  M       +GK   V MG YGIG  RV++ + E+
Sbjct: 417 GSGPLSFERGVEIGQVFQLGLKYSKAMGLNVLNQNGKAVPVWMGCYGIGVSRVMSCIAEA 476

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
            HD KG+IWP SVAP ++ LI     DQ   D  E +   L K   +V +DD      G 
Sbjct: 477 HHDDKGLIWPLSVAPAQVHLIATG-KDQKAYDLAESLLGDLEKADVEVLYDDRAKMSPGV 535

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +F  ++LLG P+ V+VG   +SD  VEI++R TG ++ + L++         
Sbjct: 536 KFKDSELLGLPMIVVVGRDTLSDGTVEIRNRATGEKDVVPLDQAAQAVQDLL 587


>gi|83319726|ref|YP_424209.1| threonyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|83283612|gb|ABC01544.1| threonyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 639

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 160/436 (36%), Gaps = 37/436 (8%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD  + + +L +  G       G+  WLP G    + +   +R+++     I +  P + 
Sbjct: 236 RDHRLINKRLNIF-GFDQLVGAGLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETPPIG 294

Query: 76  SADLWVESGRYDSYGKEMLRLADR---NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           + +L+  SG +D YG++M +  +    +D+  I  P +      +++   +SYR+LP   
Sbjct: 295 TVELYKTSGHWDHYGEDMFQPFNGGKGSDEQFILRPMNCPHHIAVYKQEQRSYRDLPLRI 354

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +  ++ R E      G+ R R   + D++ F  + +                  R   K
Sbjct: 355 CEHAIQHRFESSGSLTGLERVRGMKLTDSHIFVRSDQIEDEF-------------RSTYK 401

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIISLNSIVE 250
            I    ++  I  D     + L D  +   F   D   D    S      D+        
Sbjct: 402 LISEVLKTFNIQIDYLS--LSLRDPNDKVKFYKDDLMWDKAESSLEKVLIDLGLKYEKRI 459

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+   ++  +      VS   ++      F          T+   D K  
Sbjct: 460 GDAAFYGPKLDI---QIKTAQNHEITVSTIQLDFLMPNKFD--------LTYIDKDQKLV 508

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              M     G +      I +  +    + P  +AP ++ +I I    +   +    I+ 
Sbjct: 509 RPIMIHR--GLIGTYERFIATLLEQTKGVLPLWLAPKQVEIIPI---SESNLEYANLIHQ 563

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L K       D   E++  +   A     P Q+++G+K V ++ +  +   +  +  +S
Sbjct: 564 KLKKEFIRSHIDLRDERLSYKIRDAQTKKVPYQLVLGNKEVENNTITYRQYGSDAQITVS 623

Query: 431 LEEVINYASHRFSNNR 446
           ++E I+    + ++ +
Sbjct: 624 IQEFIDMLKQQINDKK 639


>gi|325120065|emb|CBZ55617.1| hypothetical protein NCLIV_060420 [Neospora caninum Liverpool]
          Length = 781

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 84/469 (17%), Positives = 146/469 (31%), Gaps = 54/469 (11%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD  +    L L        S G   WLP G K  + + A +REE    G  E+ 
Sbjct: 327 EEAKKRDHRMLGQNLHLF-FFDTNVSPGSCFWLPDGAKVYNKLCAFMREEYRFRGFQEVI 385

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + S DLW  SG Y +Y + M  L D   K     P +      +F+    SYR LP 
Sbjct: 386 SPNIFSCDLWKMSGHYQNYKENM-YLFDVEGKEWGLKPMNCPGHCIMFKHLAPSYRQLPL 444

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +  +            ++ + G
Sbjct: 445 RLADFGVLHRNELSGSLTGLTRVRRFQQDDAHIFCRMDQVKQE-VADALNFLFFVYDQFG 503

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F +   T   +    +   D    +     ++      + 
Sbjct: 504 FS------------------FELFLSTRPKKALGDRSLWDAAEGALKEALEETGRPWQLN 545

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP------------ 297
               A Y    D+    L+D+L    +     ++      F  +Y               
Sbjct: 546 PGDGAFYGPKIDIR---LWDALKRPHQCGTIQLDFQLPIRFNLQYRTQDEAVAASREKAK 602

Query: 298 -------------MSATFKGADGKDHYVQMGS-YGIGAMRVVAAVIESSHDGKGIIWPDS 343
                          AT +   G +  ++ G    +   R +   IE             
Sbjct: 603 DEKSEKRTENGDEPEATKEEEFGVEQPLRPGMARPVIIHRAILGSIERMCAVVIEHTGGK 662

Query: 344 VAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           +  +      I         D    +   L   G +V  D     +  +   A L  +  
Sbjct: 663 LPFWLSPRQCIVLPISDKVNDYATSVRDVLHSCGYEVGLDVSNNTVNKKIREAQLQQWNY 722

Query: 403 QVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHR-FSNNRPVL 449
            ++VG K  +D  V ++ R     +  +S+E+++     +   N++  L
Sbjct: 723 LLVVGEKERADKTVTVRDRADPEHQHVLSMEDLLQLFEKQGMPNSKKTL 771


>gi|325269899|ref|ZP_08136509.1| threonine--tRNA ligase [Prevotella multiformis DSM 16608]
 gi|324987872|gb|EGC19845.1| threonine--tRNA ligase [Prevotella multiformis DSM 16608]
          Length = 649

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/450 (17%), Positives = 151/450 (33%), Gaps = 38/450 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L      +  KG+  WLP G +    +  ++R      
Sbjct: 232 EYLVMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQDLLRRLLRPY 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P +   +L+V SG Y  YGK+  +       D+  +  P +     +++    
Sbjct: 291 NYQEVITPGIGGKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEVYAYKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    FR E      G+ R R F   DA+ F    +     +       
Sbjct: 351 RSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIFVRPEQVKTE-FETNIDII 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L++F   G  +   +                  D  + + +   D +     +      +
Sbjct: 410 LKVFKTFGFDNYEAQISLR--------------DPNDKEKYIGSDEVWEESEAAIKQACE 455

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++      F          
Sbjct: 456 EKGLKARVELGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLPNRF--------KL 504

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D        +     G++    AV+     G   +W           + I    +
Sbjct: 505 EYTAEDNSKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW------LTPDQVAILPISE 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+ A L         DD  E+IG +    +L   P  VIVG K  ++  V ++
Sbjct: 559 KYNDYAFKVKAYLDAHNVRSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEAAEGLVSMR 618

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  G +  M++E      +   ++    L
Sbjct: 619 QQGGGEQATMTMEAFAERINAEVADQLKTL 648


>gi|254456980|ref|ZP_05070408.1| threonyl-tRNA synthetase [Campylobacterales bacterium GD 1]
 gi|207085772|gb|EDZ63056.1| threonyl-tRNA synthetase [Campylobacterales bacterium GD 1]
          Length = 602

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 67/444 (15%), Positives = 152/444 (34%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +   + +   RD     +++ L T    +   G   WLP G +    + +++ +   
Sbjct: 194 LSAHMTMLAEAEKRDHRKIGNEMNLFT-FREEVGAGFPIWLPAGGRLRARLESLLYKAHR 252

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  +DLW  SG Y +YG+ M      +D      P +      ++   +
Sbjct: 253 KRGYEPVRGPEMLRSDLWKTSGHYQNYGENM-YFTKIDDIEFGVKPMNCVGHIKVYEDEL 311

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  +++  +  R E      G+ R REF   DA+ F  + +  +     +    
Sbjct: 312 RSYRDLPIKYFEYGVVHRHEFTGALHGLFRVREFTQDDAHIFCTSEQIEEQIIEVVDFV- 370

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                               I      ++ ++  T   +   S +  +    +     D 
Sbjct: 371 ------------------DKIMSTFEFDYKMMVSTKPEKAVGSDEVWEVSTQALKNAMDK 412

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D++    +     ++    F    ++       
Sbjct: 413 NNLPYEIDEGGGAFYGPKIDI---KITDAIGREWQCGTIQLD----FNLPERF----ELE 461

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G + +      +    +G+      ++   +        +       + + I      
Sbjct: 462 YNGENNEKIQPVMIHRAILGSFERFIGILTEHY------AGEFPMFIAPTQVAIVPIADT 515

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  +L  +  D       + +  +   A+    P+ VI+G + V    V I+ 
Sbjct: 516 HHGYAKELADKLIDINADSEIYSKNDSLNKRIRTAEKTRVPMLVIIGDEEVEGRTVAIRD 575

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R T  + ++S +E +     + + 
Sbjct: 576 RRTREQYNLSEDEFLKLIQTKINE 599


>gi|332296932|ref|YP_004438854.1| Prolyl-tRNA synthetase [Treponema brennaborense DSM 12168]
 gi|332180035|gb|AEE15723.1| Prolyl-tRNA synthetase [Treponema brennaborense DSM 12168]
          Length = 615

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 102/254 (40%), Positives = 147/254 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+  +  L+E P +A IASH+LMLR G+I +   G++++LP G ++   V  IIREE
Sbjct: 1   MKTSETLISTLREVPAEAVIASHQLMLRAGLIRKLGNGLFTYLPFGLRSFRKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+    +   +LW ESGR+D+ G  MLR+ +R D+ ++  PT EE +T + R 
Sbjct: 61  MDAIGALEIKPSVVVPGELWRESGRWDTMGAGMLRIKNRVDQELVVSPTAEEAVTALIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  K+RDE+RPR+GVMR REF+MKDAYSF    E    +Y  M  +
Sbjct: 121 ELSSYKQLPIVAYQINTKYRDEIRPRYGVMRGREFMMKDAYSFHADAESLDKTYLAMEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL  IP+ A+SG +GG  S EF+V +  G+  +             +     
Sbjct: 181 YKRIFKRLGLSVIPVSADSGAMGGSGSEEFMVESPIGDDTLILCPKCGYAANTEKAACAP 240

Query: 241 DIISLNSIVEQWTA 254
           D +       Q  A
Sbjct: 241 DEVQDKDGKPQVAA 254



 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 61/174 (35%), Positives = 97/174 (55%), Gaps = 5/174 (2%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T+DV      D  P    +  S +G E+GHIF  G KY+  M+ T+   +GK     MG 
Sbjct: 424 TADVRTVVAGDLCPCCGAEFYSKKGNELGHIFKLGYKYTKSMNVTYLDENGKQQVPTMGC 483

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +A++IE  HDG GI+WP S AP+++ ++ +K      ++  + +YA L + G
Sbjct: 484 YGIGVDRSLASIIEEHHDGNGIVWPMSAAPYQVVIVPVKYEG-TMKEIADSLYAELRQAG 542

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            +V  DD  E+ G +F   DL+G P++++VG K + +  VE+K R     + + 
Sbjct: 543 IEVLLDDRNERPGVKFKDMDLIGIPVRIVVGEKNLPN--VELKLRSAADSDLVP 594


>gi|328955410|ref|YP_004372743.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Coriobacterium
           glomerans PW2]
 gi|328455734|gb|AEB06928.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Coriobacterium
           glomerans PW2]
          Length = 643

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 135/440 (30%), Gaps = 44/440 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD +    +L + T M  +   G+  +LP G + +  +   +  E  R G 
Sbjct: 235 LFRLEEAAKRDHKKLGRELGIFT-MFDEAGPGLPLYLPAGARVIRLMETWLSRELYRRGY 293

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK-------AMIYGPTHEEVMTDIFR 119
            E+  P +  +D+W  SG Y  Y   M                     P +      I++
Sbjct: 294 QEVITPHIYKSDVWKTSGHYGYYRDNMYFFNINEGTAEEPRLSEFGVKPMNCPGHVLIYK 353

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           + + SYR LP  +++    +R EL     G+ R+R F   DA+ F    +      + + 
Sbjct: 354 NDLHSYRELPIRYFEFGTVYRHELSGAVNGLFRARGFTQDDAHVFCREDQVIDE-IDSIM 412

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +   I     L                         T   +     D  +         
Sbjct: 413 DTVDFIMGTFELPYTCEI------------------STRPDKSIGGDDMWEKAERFLAEA 454

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            D       I     A Y    DV   K+ DSL    + S   ++    F    ++ L  
Sbjct: 455 LDRRGIPFEINAGDGAFYGPKIDV---KVKDSLGRTWQCSTIQVD----FNLPERFDLSY 507

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                         +     I   R +  VIE +     +                    
Sbjct: 508 RTADNDELRPWMLHRAIFGSI--DRFLGIVIEHTAGNFPLWLAPVQCAIIPIA------- 558

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   +I   +   G      +  E + ++ A A+    P  ++VG K  +   V +
Sbjct: 559 DRHLDYACEIKRLIEAAGGRAEVAEHNEPMRAKIARAEAKKVPYMLVVGDKEAAARTVSV 618

Query: 419 KHRLTGIREDMSLEEVINYA 438
           +    G R  M ++E ++  
Sbjct: 619 REHSEGDRGSMPIDEFLSII 638


>gi|297243465|ref|ZP_06927397.1| threonyl-tRNA synthetase [Gardnerella vaginalis AMD]
 gi|296888510|gb|EFH27250.1| threonyl-tRNA synthetase [Gardnerella vaginalis AMD]
          Length = 660

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 62/457 (13%), Positives = 135/457 (29%), Gaps = 49/457 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      ++ L +    +   G+  + P G   ++ +    RE+  +  
Sbjct: 228 YTTRMEEAAKRDHRKLGQEMDLFS-FPDEIGPGLAVFHPKGAAIINAMEDYSREQHRKHH 286

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R        P +  +
Sbjct: 287 YSFVQTPHITKGGLYETSGHLQWYKDGMYPPMKLDEERDENGNVTRQGADYYLKPMNCPM 346

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +    
Sbjct: 347 HNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHIYCTREQMRDE 406

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    L +    GL    +   +                  E +   S +  +   
Sbjct: 407 L-KSLLNFVLGLLKDFGLNDFYLELST----------------KDEHKFVGSDEIWEEAT 449

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +      +            A Y       + +  D++    +VS   ++    F    
Sbjct: 450 NTLAEVAKESGLELVDDPGGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNLPE 502

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       +  ADG       +     G++    A++   + G    W   V    + +
Sbjct: 503 RF----KLEYIAADGSHQRPVMIHRALFGSIERFFAILLEHYAGAFPAWLAPVQVTGVPV 558

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                         +K+ + L +       D+  ++ G +   A     P  +I G + V
Sbjct: 559 A------DEFAPHLQKLISDLEENMVRCEMDNSDDRFGKKIRNASKSKVPFTLIAGEEDV 612

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           +++ V  + R       + + +   +          V
Sbjct: 613 NNNAVSFRFRDGSQLNGVPVSQAKEWILSIIKQRVQV 649


>gi|184201256|ref|YP_001855463.1| prolyl-tRNA synthetase [Kocuria rhizophila DC2201]
 gi|226701301|sp|B2GKS1|SYP_KOCRD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|183581486|dbj|BAG29957.1| prolyl-tRNA synthetase [Kocuria rhizophila DC2201]
          Length = 606

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 99/240 (41%), Positives = 139/240 (57%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DA++ SHKL++R G I + + GIY+WLPLG   L  V  I+REE 
Sbjct: 4   RLSSLFLRTLREDPVDADVDSHKLLVRAGYIRRAAPGIYTWLPLGLAVLRRVEGIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  S R+  YG+ + RL DR     +  PTHEE+ T + +  
Sbjct: 64  DAIGAQEVHFPALLPREPYEASNRWTEYGENLFRLQDRKGADYLLAPTHEEMFTLLVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   +Y K   +Y
Sbjct: 124 YSSYKDLPVMLYQIQTKYRDEARPRAGLLRGREFIMKDSYSFDVDDAGLDDAYAKHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +RIF RLGL  + + A SG +GG  S EF+  +  GE     S       + +  T   +
Sbjct: 184 VRIFERLGLPVVAVSATSGAMGGSRSEEFMHPSVVGEDTFVRSAGGYAANVEAVTTVVPE 243



 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 5/204 (2%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSA 300
             +  +V +    + AT +    +  D  P+       ARG+E+GH+F  G KY+  +  
Sbjct: 397 AHVYDLVAERDFTWDATLEACTVREGDPAPDGSGPLEIARGMEMGHVFQLGRKYAEALGL 456

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                +GK   V MGSYGIG  R +AAV E  HD  G++WP +++P  + ++      + 
Sbjct: 457 KVLDNNGKLVTVTMGSYGIGVTRALAAVAEFYHDEHGLLWPRNLSPADVHVVATGKGPE- 515

Query: 361 CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +A E+I A L   G  V +DD      G +F  A+LLG P  ++VG + ++D  +E+K
Sbjct: 516 VLEAAEEIVAHLEAAGVSVLFDDRPKVSPGVKFRDAELLGVPTVLVVG-RGLADGVLELK 574

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R +G   D++ + V+   +    
Sbjct: 575 DRRSGTSRDIARDRVVAEITAELQ 598


>gi|321252491|ref|XP_003192424.1| threonine-tRNA ligase [Cryptococcus gattii WM276]
 gi|317458892|gb|ADV20637.1| Threonine-tRNA ligase, putative [Cryptococcus gattii WM276]
          Length = 771

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/452 (17%), Positives = 152/452 (33%), Gaps = 43/452 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  K +L   +   RD         L     +  S G   +LP+G +  + +   I+EE
Sbjct: 349 MKEYKKYL--EEAAKRDHRKIGKDQELFV--FNDLSPGSAFFLPMGMRIYNTLMTFIKEE 404

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + +A+LW  SG + +Y ++M +L   ++      P +      IF +
Sbjct: 405 YFKRGFSEVGSPNIFNANLWKTSGHWQNYAEDMFQLK-VDEDQFALKPMNCPGHCLIFDA 463

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SY+ LP  F +  +  R+E      G+ R R F+  DA+ F    +     Y   F 
Sbjct: 464 RERSYKELPLRFAEFGVLHRNEASGALSGLTRVRRFVQDDAHIFCTPDQVEAELY-SAFE 522

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G       +   P       E    A+    +V   K              
Sbjct: 523 FLDAVYKPFGFTYKVGLSTRNPKKWMGELELWNKAENTLREVLEQK-------------- 568

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
             +     + E+  A Y    D    +L D+L  N +     ++    F    +++L   
Sbjct: 569 --VPGNWHVNEEDAAFYGPKLDF---QLTDALKRNWQCGTIQLD----FNLPERFNLKYH 619

Query: 300 ATFKGADGKDH--YVQMGSYGIGAMRVVAAVIESSH-DGKGIIWPDSVAPFKISLINIKA 356
           +  +  DG      V +    +G++    A+I  S      +                  
Sbjct: 620 SAEQSPDGTQFARPVMIHRAILGSLERFIAIITESTGGKWPLWLSPRQVVVIPVAKPFT- 678

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  +K+     + G     D     +  +   A    +   ++VG   +    V
Sbjct: 679 ------EYAQKVAKTFQEAGLYAEVDLTDNTLNKKIRNAQTAQWNFIMVVGQDELDAQAV 732

Query: 417 EIKHRLTGIR---EDMSLEEVINYASHRFSNN 445
            I++R   ++   E + L   +        + 
Sbjct: 733 NIRNRDDEVQGREETVVLSRAVEQIVKLKESK 764


>gi|57239615|ref|YP_180751.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58579605|ref|YP_197817.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|73919788|sp|Q5H9Z4|SYT_EHRRW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57161694|emb|CAH58624.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58418231|emb|CAI27435.1| Threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
          Length = 633

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 149/439 (33%), Gaps = 41/439 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L E   RD      +L L    I   + G   W   G      +   IR++   
Sbjct: 229 KLYLNNLIEVEKRDHRKIGKELELF--HIQNEALGQIFWHEKGLIIYRIIENYIRKKLEN 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G IE+  P L S  LW +SG +D + + M  L++ ++K +   P +      IF S I+
Sbjct: 287 NGYIEVKTPYLLSKTLWEQSGHWDKFREHMF-LSEIDNKVVAIKPMNCPCHVQIFNSKIR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    +     R E      G+MR R F   DA+ F    +  + +        +
Sbjct: 346 SYKDLPLRMAEFGTCHRYESSGALHGLMRVRSFTQDDAHIFCTEDQIIEEALKF-CNLLM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G K I ++    P                      S    D    +        
Sbjct: 405 EVYEVFGFKDILVKFSDRPEKR-----------------AGSDKIWDKAEEALKASVKAA 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    +     L D++    +     ++       G        A +
Sbjct: 448 NLNYVLNPGDGAFYGPKLEF---TLKDAIGREWQCGTLQMDFVLPERLG--------AYY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G+DGK H+   +    +G +     ++   H GK  IW   V    +++       +  
Sbjct: 497 TGSDGKKHHPIMLHRAILGTIERFIGILIEHHSGKLPIWLAPVQLSILTIT------EDA 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    +  +  K       D   E+I  +         P+  I+G K +    V I++ 
Sbjct: 551 IDYAISLKHKAMKQNIRAEVDITNEKINYKIRSHISKKIPVLWIIGKKEIETESVSIRYL 610

Query: 422 LTGIREDMSLEEVINYASH 440
            +  +  MS ++ +     
Sbjct: 611 ESKDQHIMSSDKALKTLLS 629


>gi|257055522|ref|YP_003133354.1| threonyl-tRNA synthetase [Saccharomonospora viridis DSM 43017]
 gi|256585394|gb|ACU96527.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase
           [Saccharomonospora viridis DSM 43017]
          Length = 692

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 63/449 (14%), Positives = 134/449 (29%), Gaps = 50/449 (11%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      +L L +    +   G+  + P G      +    R      G
Sbjct: 258 YLEMLAEAERRDHRKLGAELDLFS-FPEEIGSGLPVFHPKGGVVRKVLEDYSRRRHEEAG 316

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              ++ P +  A L+  SG    Y + M                 +  +     P +  +
Sbjct: 317 YEFVNTPHITKAQLFETSGHLHWYREGMYPGMHLDAEYNDDGTVRKPGQDYFLKPMNCPM 376

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKH 172
              I+RS  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +    
Sbjct: 377 HNLIYRSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTVDQMHDE 436

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    L +    GL    +   +                        S +  +   
Sbjct: 437 -IKSLLQFVLDLLRDYGLDDFYLELSTRDPEKS----------------IGSDEDWERAT 479

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +  +  +       +     A YA      + +  D++  + ++S   +++     FG 
Sbjct: 480 DALRSAAEASGLDLVLDPGGAAFYAPKI---SVQAKDAIGRSWQMSTIQVDLMEPELFG- 535

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    ++ +DG       +     G++     V+   + G    W   V    I +
Sbjct: 536 -------LEYQASDGSKQQPVMIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPI 588

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                      +    +   L   G  V  D   +++  +         P  ++ G + V
Sbjct: 589 A------DAHVEHLRGVEKALRDRGIRVELDTSDDRMQKKIRTHTTQKVPFLLLAGGRDV 642

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASH 440
               V  + R       + +   ++    
Sbjct: 643 EAGAVSFRFRDGSQINGVPVATAVDAVVD 671


>gi|67605980|ref|XP_666722.1| threonyl-tRNA synthetase [Cryptosporidium hominis TU502]
 gi|54657772|gb|EAL36495.1| threonyl-tRNA synthetase [Cryptosporidium hominis]
          Length = 763

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 148/450 (32%), Gaps = 40/450 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  +Y   + +   RD  +    L L        S G   WLP G +  + +   IR E 
Sbjct: 319 RLDEYLNMLEEAKKRDHRLLGSNLQLF-FFDSNVSPGSCFWLPAGARLYNKLMDFIRSEY 377

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P + S DLW  SG Y +Y + M  + D  +K     P +      +F+  
Sbjct: 378 RIREFTEVITPNIFSCDLWKTSGHYFAYKENMF-IFDVEEKEWGLKPMNCPGHCVMFKHM 436

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR LP       +  R+E      G+ R R F   DA+ F    +  +  +      
Sbjct: 437 NPSYRQLPIRLADFGVLHRNEFSGALNGLTRVRRFQQDDAHIFCTPEQIQEEVFK-ALDF 495

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+ +LG                    F +   T   +   +++       +  +  D
Sbjct: 496 LFFIYGQLGFT------------------FDLFLSTMPKEHLGTEEQWKEAENALKSALD 537

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPM 298
                  +     A Y    D+    L+D+L    +     ++      F    +    +
Sbjct: 538 KTGRDWKLNPGDGAFYGPKIDIM---LWDALKRQHQCGTIQLDFQLPIRFNLQYRTDENI 594

Query: 299 SATFKGADGKDHY-----------VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           S      +    +            Q     +   R +   +E             +  +
Sbjct: 595 SEESTNQEQPPSHQNADQNPDNSLKQGYKRPVIIHRAILGSVERMSAVILEHTGGKLPFW 654

Query: 348 KISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
                 I     +   +  + +   LS+ G DV  D     I  +   + LL +   +++
Sbjct: 655 LSPRQAIVLSISEKTVEYAKSVERELSRRGFDVSGDYSAATINKKIRESQLLQWNYMLVI 714

Query: 407 GSKFVSDSKVEIKHRLTGI-REDMSLEEVI 435
           G     D KV ++ R T I +E ++L+++I
Sbjct: 715 GENEARDKKVTLRCRDTTIPQELLTLDQLI 744


>gi|326776245|ref|ZP_08235510.1| prolyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
 gi|326656578|gb|EGE41424.1| prolyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
          Length = 567

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 110/263 (41%), Positives = 154/263 (58%), Gaps = 4/263 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + +++ GI+SWLPLG+K LDN++ ++REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRNAAGIWSWLPLGKKVLDNISNVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 66  DAIGAQEVLLPALLPKEPYEASGRWEEYGDLLFRLKDRKGGDYLLGPTHEEIFTQTVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG  HSY     +Y
Sbjct: 126 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTTDEGLAHSYALHRAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
           ++IF RLGL    + A SG +GG  S EF+  A  GE   F      D+   +E   F  
Sbjct: 186 IKIFERLGLDHRIVSAVSGAMGGSASEEFLAPAAAGE-DTFADCPHCDYAANTEAVTFAL 244

Query: 240 -DDIISLNSIVEQWTAPYAATSD 261
                S +  VE+   P   T +
Sbjct: 245 APVDGSAHGAVEELDTPDTPTIE 267



 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 6/186 (3%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           DV   +  D  P+     V  R IE+GHIF  G KY+        G  GK   V MGSYG
Sbjct: 385 DVVVVEEGDPCPKCGTGLVLDRAIEIGHIFQLGRKYADTFQLDVLGQQGKPVRVTMGSYG 444

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R VAA+ E + D KG+ WP  +AP  +    + A   +  +    +  +L+  G  
Sbjct: 445 IGVSRAVAALTEQTADDKGLCWPREIAPADVH--VVAAGKALQTELALDVSEKLNAAGLR 502

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V  DD  G   G +F  ++L+G P  ++ G +  +D  +E+K R TG RE+++++E I  
Sbjct: 503 VLVDDRPGVSPGVKFTDSELIGVPKILVAGRRS-ADGVLELKDRRTGEREELTVDEAIAR 561

Query: 438 ASHRFS 443
            +   +
Sbjct: 562 LTADLA 567


>gi|45185649|ref|NP_983365.1| ACL039Wp [Ashbya gossypii ATCC 10895]
 gi|44981367|gb|AAS51189.1| ACL039Wp [Ashbya gossypii ATCC 10895]
          Length = 724

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/431 (17%), Positives = 157/431 (36%), Gaps = 41/431 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +  L   M ++ S G   WLP G +  +N+  ++R E  + G 
Sbjct: 309 LKFLEEAAKRDHRKIGREQELF--MFNEMSPGSCFWLPHGTRIYNNLVELLRNEYRKRGY 366

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + ++ LW  SG + +Y + M    +   ++    P +      +F+S  +SYR
Sbjct: 367 EEVITPNMYNSKLWETSGHWANYKENMFTF-EVEKESFGLKPMNCPGHCVMFKSRERSYR 425

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP+      +  R+E      G+ R R F   DA+ F    +        +F     ++
Sbjct: 426 ELPWRVADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCAQDQIETE-IEGLFDFLKYVY 484

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G                   EF +   T         +  +       +  +     
Sbjct: 485 GVFG------------------FEFKLELSTRPENYVGDLETWNNAEARLESALNKWGGD 526

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    D+    + D+L    + +   ++    F    ++ L         
Sbjct: 527 WEINEGDGAFYGPKIDIM---ISDALKRWHQCATIQLD----FQLPNRFELEYKGKGNDE 579

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           +  +  V +    +G++  + A++    +     WP  ++P ++ ++ +       +D  
Sbjct: 580 NAYERPVMIHRALLGSVERMTAILT---EHYAGKWPFWLSPRQVLVVPVGVK---YQDYA 633

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--- 422
           ++I  +L   G     D     +  +     +L +    +VG + ++++ V I++R    
Sbjct: 634 QQIRDKLVGAGFYADADLGSNTLQKKVRTGQMLKYNFIFVVGEQEMNENSVNIRNRDVTD 693

Query: 423 -TGIREDMSLE 432
             G  E +  +
Sbjct: 694 LQGKNETVDFD 704


>gi|58617659|ref|YP_196858.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
 gi|73919787|sp|Q5FGP1|SYT_EHRRG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|58417271|emb|CAI28384.1| Threonyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
          Length = 633

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 149/439 (33%), Gaps = 41/439 (9%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L E   RD      +L L    I   + G   W   G      +   IR++   
Sbjct: 229 KLYLNNLIEVEKRDHRKIGKELELF--HIQNEALGQIFWHEKGLIIYRIIENYIRKKLEN 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G IE+  P L S  LW +SG +D + + M  L++ ++K +   P +      IF S I+
Sbjct: 287 NGYIEVKTPYLLSKTLWEQSGHWDKFREHMF-LSEIDNKVVAIKPMNCPCHVQIFNSKIR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    +     R E      G+MR R F   DA+ F    +  + +        +
Sbjct: 346 SYKDLPLRMAEFGTCHRYEASGALHGLMRVRSFTQDDAHIFCTEDQIIEEALKF-CNLLM 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G K I ++    P                      S    D    +        
Sbjct: 405 EVYEVFGFKDILVKFSDRPEKR-----------------AGSDKIWDKAEEALKASVKAA 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    +     L D++    +     ++       G        A +
Sbjct: 448 NLNYVLNPGDGAFYGPKLEF---TLKDAIGREWQCGTLQMDFVLPERLG--------AYY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G+DGK H+   +    +G +     ++   H GK  IW   V    +++       +  
Sbjct: 497 TGSDGKKHHPIMLHRAILGTIERFIGILIEHHSGKLPIWLAPVQLSILTIT------EDA 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    +  +  K       D   E+I  +         P+  I+G K +    V I++ 
Sbjct: 551 IDYAISLKHKAMKQNIRAEVDITNEKINYKIRSHISKKIPVLWIIGKKEIETESVSIRYL 610

Query: 422 LTGIREDMSLEEVINYASH 440
            +  +  MS ++ +     
Sbjct: 611 ESKDQHIMSSDKALKTLLS 629


>gi|88856273|ref|ZP_01130933.1| threonyl-tRNA synthetase [marine actinobacterium PHSC20C1]
 gi|88814592|gb|EAR24454.1| threonyl-tRNA synthetase [marine actinobacterium PHSC20C1]
          Length = 653

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 68/456 (14%), Positives = 135/456 (29%), Gaps = 48/456 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +    +E   RD      +L L +    +   G+  + P G      +    R    + G
Sbjct: 232 YQARQEEALKRDHRKLGAELDLFS-FPDEIGSGLAVFHPKGGIIRHEMENYSRTRHLQEG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              ++ P +    L+  SG    Y   M                 R        P +  +
Sbjct: 291 YSFVNTPHITKEALFETSGHLGWYKDGMFPPMHLDEARNEEGEITRQGADYYLKPMNCPM 350

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              I++S  +SYR LP   ++    +R+E      G+ R R   M DA+ F  T EG K 
Sbjct: 351 HILIYKSSGRSYRELPMRLFEFGTVYRNEKSGVIHGLTRVRGLTMDDAHIF-TTKEGMKA 409

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                    L +    GL    +   +                    +     +  D   
Sbjct: 410 ELTNTLNFVLSLLRDYGLTDFYLELST----------------KDPEKYVGDDEIWDEAT 453

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +      +            A Y       + +  D++    ++S   ++    F    
Sbjct: 454 QTLAEVAAESGLELVPDPGGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLPE 506

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           ++ L  +A       +   V +     G++     V+   + G   +W   V    I + 
Sbjct: 507 RFDLEYTAA---DGSRQRPVMIHRALFGSIERFFGVLTEHYAGAFPVWLSPVQVVGIPVA 563

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                 +   +    +  +L  +G     D   E++  +         P Q+I G +  +
Sbjct: 564 ------EAYEEYLGGVVDQLKALGVRAELDASSERMQKKIRTHTKSKIPFQLIAGEQDQA 617

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
              +  + R       + + + I   +   S    V
Sbjct: 618 AGSISFRFRDGSQENGIPIADAIARITDAISTRAQV 653


>gi|299140628|ref|ZP_07033766.1| threonine--tRNA ligase [Prevotella oris C735]
 gi|298577594|gb|EFI49462.1| threonine--tRNA ligase [Prevotella oris C735]
          Length = 649

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 148/444 (33%), Gaps = 36/444 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L      +  KG+  WLP G +    +  ++R      
Sbjct: 232 EYLVMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQELLRSLLRPY 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P +    L+V SG Y  YGK+  +       D+  +  P +     +++    
Sbjct: 291 NYQEVITPGIGGKSLYVTSGHYAHYGKDAFQPIHTPEEDEEYMLKPMNCPHHCEVYARKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    FR E      G+ R R F   DA+ F   P+  K  +       
Sbjct: 351 RSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIFVR-PDQVKAEFETNIDII 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L++F      +   +                     + +   S +  +    +      +
Sbjct: 410 LKVFKTFQFDNYEAQISLRD-------------PKDKEKYIGSDEIWEESQNAIREACKE 456

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
              +        A Y    D     + D++    ++    ++      F           
Sbjct: 457 KGLVAREEIGEAAFYGPKLDFM---VKDAIGRKWQLGTIQVDYNLPARF--------KLE 505

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +     G++    AV+     G   +W           + I    + 
Sbjct: 506 YTAEDNTKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW------LTPDQVAILPISEK 559

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +++      VG     DD  E+IG +    +L   P  VIVG K  ++  V ++ 
Sbjct: 560 YNDYAKQVSKYFDSVGVRAVIDDRNEKIGRKIRDNELKRIPYMVIVGEKEAAEGLVSMRK 619

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           +  G +  M +EE  N  +   ++
Sbjct: 620 QGGGEQATMKMEEFANRINAEVAD 643


>gi|281423114|ref|ZP_06254027.1| threonine--tRNA ligase [Prevotella oris F0302]
 gi|281402450|gb|EFB33281.1| threonine--tRNA ligase [Prevotella oris F0302]
          Length = 649

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 148/444 (33%), Gaps = 36/444 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L      +  KG+  WLP G +    +  ++R      
Sbjct: 232 EYLVMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQELLRSLLRPY 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P +    L+V SG Y  YGK+  +       D+  +  P +     +++    
Sbjct: 291 NYQEVITPGIGGKSLYVTSGHYAHYGKDAFQPIHTPEEDEEYMLKPMNCPHHCEVYARKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    FR E      G+ R R F   DA+ F   P+  K  +       
Sbjct: 351 RSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIFVR-PDQVKAEFETNIDII 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L++F      +   +                     + +   S +  +    +      +
Sbjct: 410 LKVFKTFQFDNYEAQISLRD-------------PKDKEKYIGSDEIWEESQNAIREACKE 456

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
              +        A Y    D     + D++    ++    ++      F           
Sbjct: 457 KGLVAREEIGEAAFYGPKLDFM---VKDAIGRKWQLGTIQVDYNLPARF--------KLE 505

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +     G++    AV+     G   +W           + I    + 
Sbjct: 506 YTAEDNTKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW------LTPDQVAILPISEK 559

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +++      VG     DD  E+IG +    +L   P  VIVG K  ++  V ++ 
Sbjct: 560 YNDYAKQVSKYFDSVGVRAVIDDRNEKIGRKIRDNELKRIPYMVIVGEKEAAEGLVSMRK 619

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           +  G +  M +EE  N  +   ++
Sbjct: 620 QGGGEQATMKMEEFANRINAEVAD 643


>gi|24583842|ref|NP_723726.1| Threonyl-tRNA synthetase, isoform C [Drosophila melanogaster]
 gi|28574141|ref|NP_524839.3| Threonyl-tRNA synthetase, isoform B [Drosophila melanogaster]
 gi|7297922|gb|AAF53167.1| Threonyl-tRNA synthetase, isoform B [Drosophila melanogaster]
 gi|22946308|gb|AAN10805.1| Threonyl-tRNA synthetase, isoform C [Drosophila melanogaster]
          Length = 690

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 147/432 (34%), Gaps = 40/432 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   I+ E  + G  E+ 
Sbjct: 285 EEAAKRDHRKIGREQELF--FFHELSPGSCFFQPRGAHIYNTLMGFIKAEYRKRGFQEVI 342

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +A LW+ SG +  Y + M       +K     P +      IF +  +S+R LP 
Sbjct: 343 SPNIYNAKLWMTSGHWQHYAENMFSFEAEKEK-FALKPMNCPGHCLIFDNRNRSWRELPL 401

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +               ++   G
Sbjct: 402 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAPEQIKSEM-KGCLEFLKYVYTIFG 460

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P       E    A+                  +     ++        
Sbjct: 461 FSFQLV-LSTRPDNYLGELEQWNDAEK-----------------ALAESLNEFGMPWKEN 502

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    +++L   A       K 
Sbjct: 503 PGDGAFYGPKIDI---TIMDALKRAHQCATIQLD----FQLPIRFNLSYIA---DDGEKK 552

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +     WP  ++P ++ ++ +           + + 
Sbjct: 553 RPVIIHRAILGSVERMIAILT---ENFAGKWPFWLSPRQVMVVPVGP---AYDQYAQSVR 606

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L   G     D D G+ +  +   A L  F   ++VG K  S + V ++ R   +  +
Sbjct: 607 DQLHDAGFMSEADCDAGDTMNKKIRNAQLAQFNFILVVGDKERSSNTVNVRTRDNKVHGE 666

Query: 429 MSLEEVINYASH 440
           +S+ E+I     
Sbjct: 667 VSVAELITKLQK 678


>gi|163791590|ref|ZP_02185991.1| prolyl-tRNA synthetase [Carnobacterium sp. AT7]
 gi|159873139|gb|EDP67242.1| prolyl-tRNA synthetase [Carnobacterium sp. AT7]
          Length = 568

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 104/251 (41%), Positives = 155/251 (61%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L++ P +AE+ SHK++LR G I Q S G+YS+LPL  + ++ +  I+REE
Sbjct: 1   MKQSKLFIPTLRDVPNEAEVLSHKMLLRAGYIRQISSGVYSYLPLANRVIEKLKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P+L   +LW ESGRY++YG ++++L DR+ +  + GPTHEE  T + R 
Sbjct: 61  FEKIDAVEMLMPSLLPRELWEESGRYETYGDDLMKLQDRHGRDYLLGPTHEEAFTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ KFRDE RPR G++R REF+MKDAYSF  + E    +Y     +
Sbjct: 121 EITSYKRLPLSLYQIQTKFRDEKRPRSGLLRGREFIMKDAYSFHDSYESLDETYLDFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R GL    +  ++G +GG  S EF+ ++D GE  +  S    D+    E     
Sbjct: 181 YTRIFERCGLDFRSIIGDAGAMGGSNSKEFMAISDIGEDTIVYSDS-SDYSANLEMATSF 239

Query: 241 DIISLNSIVEQ 251
            +   +   E+
Sbjct: 240 HMHKKSLENEK 250



 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 8/227 (3%)

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
            V+           +EN      ++L    +  T       D+   +  +  P+ + V  
Sbjct: 347 DVYVQDMVNAVAGANENGYHYLNVNLERDSKVET-----YIDLRFVQEGELSPDGQGVLK 401

Query: 280 --RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             +GIE+GHIF  GT+YS  M+AT    +G+   V MG YGIG  R+++A+ E     +G
Sbjct: 402 FAKGIEIGHIFKLGTRYSEAMNATVLDNNGRSIPVVMGCYGIGVTRLLSAITEQQATEEG 461

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + WP  ++PF++ L+ +            ++Y  L   G  V  DD  E++G +F  +DL
Sbjct: 462 LNWPRHLSPFELHLVPVNMKADDQVTLSNELYETLQHAGFSVLLDDRNERVGVKFKDSDL 521

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P+++ VG K   ++ VE+K R TG   ++  +E+++  +   S+
Sbjct: 522 IGLPIRITVGKK-AQENIVELKLRKTGEALEVRADELVDTLNILLSS 567


>gi|332265240|ref|XP_003281636.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic isoform
           1 [Nomascus leucogenys]
          Length = 793

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 151/447 (33%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 376 KMMRNWEKSQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLTDFIREE 433

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y + M       D      P +      +F  
Sbjct: 434 YHKRDFTEVLSPNMYNSKLWEASGHWQHYSENMFTFEIEKDT-FALKPMNCPGHCLMFAH 492

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 493 RPRSWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLQ 551

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  +       +  
Sbjct: 552 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEIEMWNEAEKQLQSSL 593

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 594 MDFGEPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPVRFNLTYV 646

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 647 SK--DGDDKKRPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPHQVMVIPVGP--- 698

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C     ++ +   + G     D D    +  +   A L  +   ++VG K   ++ V +
Sbjct: 699 ACEKYALQVSSEFFEEGFMADVDLDHNCTLNKKIRNAQLAQYNFILVVGEKEKVNNAVNV 758

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   I  ++ +   I+   +     
Sbjct: 759 RTRDNKIHGEILVTSAIDKLKNLKKTR 785


>gi|134102383|ref|YP_001108044.1| prolyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915006|emb|CAM05119.1| prolyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
          Length = 574

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 96/217 (44%), Positives = 134/217 (61%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            FL  L+E+P DAE+ SH+L++R G + +   GIYSWLPLG + L N+  I+R+E +  G
Sbjct: 1   MFLRTLREDPADAEVPSHRLLVRAGYVRRIGPGIYSWLPLGLRVLRNIEEIVRQEMDAIG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+ T   +    SY
Sbjct: 61  AQEIHFPALLPKEPYEATNRWTEYGPNLFRLKDRKGGDYLLGPTHEELFTLTVKGEYSSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           ++ P   YQIQ K+RDE RPR G++R REF+MKD+YSFDL  EG  +SY     +Y+RIF
Sbjct: 121 KDYPVILYQIQTKYRDEERPRAGILRGREFVMKDSYSFDLDDEGLTNSYRLHRDAYIRIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            R+GL+ + + A SG +GG  S EF+  A TGE    
Sbjct: 181 DRVGLRYVIVAATSGAMGGSASEEFLAEAPTGEDTFV 217



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/188 (36%), Positives = 102/188 (54%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+ +   V+ARGIE+GHIF  G KY+   S    G DGK   + MG
Sbjct: 388 GTIEAAEVREGDPSPDGEGTLVAARGIEIGHIFQLGRKYADAFSLDALGQDGKPKRITMG 447

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R+VAA+ E SHD  G++WP  VAP  +  + I   D+  R+  E++ A L   
Sbjct: 448 SYGVGVSRMVAAIAEQSHDELGLVWPREVAPADVH-VVIAGKDESVREGAERLAADLDAA 506

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  DD     G +FA A+L+G P  ++VG K ++   VE+K R +G RE++ ++  +
Sbjct: 507 GVRVLLDDRNASPGVKFADAELVGVPTILVVG-KGLAKGVVEVKDRRSGDREEVPVDGAV 565

Query: 436 NYASHRFS 443
            +      
Sbjct: 566 EHLVSTIR 573


>gi|224062355|ref|XP_002195014.1| PREDICTED: similar to probable threonyl-tRNA synthetase 2,
           cytoplasmic [Taeniopygia guttata]
          Length = 719

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 153/444 (34%), Gaps = 44/444 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +  I +E   RD      +  L     H  S G   +LP G    + +   IR E
Sbjct: 302 KMMKEWEKIQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFLYNTLVDFIRGE 359

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R    E+  P + ++ LW  SG +  Y + M       +      P +      +F  
Sbjct: 360 YRRRNFTEVVSPNVFNSKLWEASGHWQHYSENMFSFEVEKET-FAIKPMNCPGHCLMFAH 418

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 419 RPRSWRELPLRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTMEQ-IEEEIKDCLD 477

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  D          
Sbjct: 478 FLKSVYAVFGFT------------------FQLHLSTRPENYLGDLEIWDHAEKQLQNSL 519

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++     ++     A Y    D+   K+ D++    + +   ++    F    ++    +
Sbjct: 520 NNFGEQWNLNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRF----N 568

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+ G DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 569 LTYVGKDGDDKKRPVIIHRAILGSVERMIAILA---ENYGGKWPFWLSPRQVMVVPVGPA 625

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +      +++  +  + G     D D    +  +   A L  +   ++VG K  +++ V
Sbjct: 626 SE---QYAQQVCDQFFEAGFMSDVDLDQSCTLNKKIRNAQLAQYNFILVVGEKEKANNAV 682

Query: 417 EIKHRLTGIREDMSLEEVINYASH 440
            ++ R   +  ++S+   I     
Sbjct: 683 NVRTRDNKVHGEISVSSTIEKLKK 706


>gi|315123806|ref|YP_004065810.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017528|gb|ADT65621.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 457

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 150/444 (33%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L T    +   G+  WL  G +    +  ++ +   
Sbjct: 49  LKEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHR 107

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S +
Sbjct: 108 LRGYEPVRGPELLKADAWKISGHYANYKENM-YFTQIDEQEYGIKPMNCVGHIKIYQSDV 166

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++    
Sbjct: 167 RSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFV 225

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +                               T   +     +  +    +     ++
Sbjct: 226 DNLMKLFDFSYEMEI------------------STKPEKAIGDDEIWEIATKALKEALNE 267

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D+L    +     ++    F   +++       
Sbjct: 268 QGLKYGIDEGGGAFYGPKIDI---KITDALKRKWQCGTVQVD----FNLPSRF----KLE 316

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +D +      +    +G+      ++            +       + + I    + 
Sbjct: 317 YTDSDNEKKQPVMLHRAILGSFERFIGILTEHC------AGEFPFFIAPTAVGIVPIGEA 370

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I   L ++  D    +  E +  +  +A+    P+ +++G   V    V ++ 
Sbjct: 371 HIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVVKRSVALRD 430

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    ++++SL+E I     + S 
Sbjct: 431 RRAKEQKNLSLDEFIKLVKEKMSE 454


>gi|225021160|ref|ZP_03710352.1| hypothetical protein CORMATOL_01172 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946067|gb|EEG27276.1| hypothetical protein CORMATOL_01172 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 584

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 102/282 (36%), Positives = 150/282 (53%), Gaps = 5/282 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAE+ SHKL++R G I + + G+Y+WLPLG + L  +  ++REE 
Sbjct: 4   RLSSLFLRTLREDPADAEVPSHKLLVRAGYIRRAAPGVYTWLPLGLRTLRKIEKVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L S + + ++ R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 64  DHIGAQELLFPALLSREPYEQTRRWTEYGDNLFRLKDRKGNDMLLGPTHEEMFARQVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFD+T  G + SY     +Y
Sbjct: 124 FTSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDAGLEQSYLAHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             IF RL L+    +A SG +GG  S EF+ ++  GE   F      D+    E      
Sbjct: 184 QAIFDRLNLEYAICKATSGAMGGSASEEFLAISPNGE-DTFVRATEGDYAANVEAVTT-- 240

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                +  +    P A   +        +L +    +   I+
Sbjct: 241 --QPGTTRDFTNLPEAVIHETPESTTIAALVDWANGAGITID 280



 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 6/188 (3%)

Query: 260 SDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +V   +  D  P+ + V    RGIE+GHIF  G KY+           GK     MGSY
Sbjct: 400 VEVAEIREGDPAPDGQGVLTLERGIEIGHIFQLGRKYTEVFDVQILDEHGKRAIPTMGSY 459

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+V  + E  HD  G+ WP  VAP+++ ++     D+    A + I  +L   G 
Sbjct: 460 GIGVSRLVGVIAEQHHDDNGLNWPVEVAPYQVHVVVAN-KDKAALAAGDDIVVQLDAAGV 518

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +V +DD      G +F  ++LLG P  V++G +  S+  VE++ R  G   ++   ++++
Sbjct: 519 EVLFDDRPKVSPGVKFKDSELLGMPYIVVLG-RSFSNGIVELRIRG-GETLEVPATDIVD 576

Query: 437 YASHRFSN 444
             +     
Sbjct: 577 TVTKLIHK 584


>gi|301168478|emb|CBW28068.1| proline tRNA synthetase [Bacteriovorax marinus SJ]
          Length = 573

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 109/284 (38%), Positives = 159/284 (55%), Gaps = 3/284 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  F    +E P DAEI SH+LM+R G+IH+   G+YS+LP G +++  V  IIREE
Sbjct: 1   MKLSTGFWQTYKEVPADAEIPSHQLMVRAGLIHKMGSGLYSYLPFGYRSIRKVEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+ +  +   +LW ESGR+D+ G +ML++ D+  + +   PT+EE +TDIFR 
Sbjct: 61  LDKAGCHEILMSMVTPGELWQESGRWDAMGDQMLKVKDKGGRDLCLSPTNEEAVTDIFRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+NLP T YQI  KFRDELRPRFG+MR REF MKD YSF +  +     Y+++F +
Sbjct: 121 TIKSYKNLPVTLYQINTKFRDELRPRFGLMRGREFTMKDGYSFHIDKDSLDEVYDRIFKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLS--HEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           Y  IF R GL+   + A++G +       HEF V+A+TGE +V    +   +    E   
Sbjct: 181 YEAIFTRAGLEFSAVEADAGAMADSDQKTHEFQVIANTGEDEVIYC-NETGYAANIEKAQ 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                    +           +    E + D L   K  S + +
Sbjct: 240 TKRGKLQFDLSASEVTRVETPNMGTIESVCDFLKVPKEQSIKSL 283



 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/167 (38%), Positives = 89/167 (53%), Gaps = 2/167 (1%)

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RGIEVGHIF  G KY+  M  T   ++GK     MG YGIG  RVVAA +E  HD KG
Sbjct: 407 IRRGIEVGHIFQLGDKYTKAMGTTVLDSNGKAMNPLMGCYGIGVTRVVAAAVEQHHDDKG 466

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I+WP ++AP+ +    I       ++  EKIY  + +   +V +DD     G +F  ADL
Sbjct: 467 IVWPMALAPYHVYFAEIT-KSAENKELAEKIYNEILEANIEVVFDDRKAGPGFKFKDADL 525

Query: 398 LGFPLQVIVGSKF-VSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG PLQ++ G +    D  +EI+ R TG    +  E+V++       
Sbjct: 526 LGLPLQLVFGERDFKKDGMLEIRIRKTGESLKVKPEDVVSKLQELIK 572


>gi|315453307|ref|YP_004073577.1| threonyl-tRNA synthetase [Helicobacter felis ATCC 49179]
 gi|315132359|emb|CBY82987.1| threonyl-tRNA synthetase [Helicobacter felis ATCC 49179]
          Length = 612

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 153/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L      +   G+  WLP G +    +  ++     R+G
Sbjct: 207 YLTQLEEAKKRDHRKLGQELGLFR-FDEEVGAGLPIWLPNGMRLRKRIEDLLSVALLRSG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  + LW  SG Y++Y + M      ++      P +      +++  ++SY
Sbjct: 266 YEPVRGPEILKSSLWKISGHYENYKENM-YFTTIDEVEYGIKPMNCVGHIKVYQHALRSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F                     
Sbjct: 325 RDLPLRFYEYGVVHRHEQSGVLHGLLRVREFTQDDAHIFCR------------------- 365

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F ++  +   + A +  + G    ++ +   T  T+   S +  +    +     ++   
Sbjct: 366 FDQIKAEVQAILAFTKRVMGAFGFDYEMELSTKPTKYIGSDEVWEQATSALKEALEEQGV 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D+   K+ D++    +     +++     F          ++  
Sbjct: 426 PFKVDEGGGAFYGPKIDI---KITDAIRRKWQCGTVQVDMNLPARF--------HLSYAS 474

Query: 305 AD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     AV+   + G    +           + +        D
Sbjct: 475 EQDSPEMPVMIHRAILGSFERFIAVLTEHYGGNFPFF------IAPVQVALVPISADQHD 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +  +L   G      +  E +  +    +    PL  ++G+K   ++ + I+ R  
Sbjct: 529 YAQDLCTQLRHAGIFAEVANKNESLAKRIRTLEKQKVPLIAVIGAKETQENALAIRDRAL 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
           G +  M  +E IN    +   
Sbjct: 589 GEQYTMDSKEFINMCQEKMQE 609


>gi|329120957|ref|ZP_08249588.1| proline--tRNA ligase [Dialister micraerophilus DSM 19965]
 gi|327471119|gb|EGF16573.1| proline--tRNA ligase [Dialister micraerophilus DSM 19965]
          Length = 574

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 111/273 (40%), Positives = 162/273 (59%), Gaps = 2/273 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P L+E P +A + SHK ML+ GMI + S G YS+LPL  +++  +  II EE
Sbjct: 1   MKASKLYAPTLREIPSEAVVISHKYMLKAGMIRKISSGFYSYLPLAWRSIKKIENIIHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +   Q A++W ++GR+D YG+EM RL DR+++     PTHEE++T +   
Sbjct: 61  MAKIESQEILMSIAQPAEIWQQTGRWDVYGEEMFRLKDRHERDYCLAPTHEELVTTLVHI 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY+ LP + YQIQ K+RDE RPRFG+MRSREF+MKDAY+FD+  EG    Y+ M+ +
Sbjct: 121 DTFSYKQLPVSLYQIQNKYRDEKRPRFGLMRSREFIMKDAYTFDVDEEGLDKQYHDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF + GL    + A+SG IGG  SHEF VLA+ GE  +   +   +F    E    D
Sbjct: 181 YTNIFTKCGLNFRTVIADSGAIGGSSSHEFEVLAEAGEADIVY-EVDGEFAANVEAVIPD 239

Query: 241 DII-SLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            I  +L + +E+          + +   F  LP
Sbjct: 240 TISCNLKNDLEKEIVATPGQETIEDVCKFLGLP 272



 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 62/189 (32%), Positives = 101/189 (53%)

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            T  + ++         +    +GIEVG +F  GTKYS  ++ T+   +GK   + MG Y
Sbjct: 382 ETIRLIDKNDVSPWTGKEIEFKKGIEVGQVFKLGTKYSESLNCTYLDKNGKSKPMVMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R +AA IE +HD  GIIW  S+AP+++ +I     +       E++Y  +SK   
Sbjct: 442 GIGVTRTMAASIEQNHDKDGIIWAVSIAPYEVVIIPANNKNSEIMKVAEELYRNMSKENN 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++ +DD  E+ G +F  ADL+G+P++V +G K+  + KVEIK R TG   ++  ++    
Sbjct: 502 EIVFDDRNERAGIKFKDADLIGYPIRVTIGKKWEENGKVEIKIRRTGEVIEIDYKDCKAK 561

Query: 438 ASHRFSNNR 446
                 + R
Sbjct: 562 VESILDDLR 570


>gi|328710126|ref|XP_001950747.2| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like
           [Acyrthosiphon pisum]
          Length = 714

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 140/434 (32%), Gaps = 42/434 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   I+ E  + G  E+ 
Sbjct: 308 EEAARRDHRKIGREQELF--FFHELSPGSCFFQPKGAHIYNTLIEFIKSEYRKRGFQEVV 365

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +  LW  SG +  Y + M    D   +     P +      +F    +S+R LP 
Sbjct: 366 SPNIYNVKLWQTSGHWAHYAENMFSF-DVEKETYALKPMNCPGHCLMFDHRNRSWRELPL 424

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F  T +  +            ++   G
Sbjct: 425 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTTDQIGQEM-MSSLDFLRHVYTVFG 483

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F +   T   +     +  +          +      ++ 
Sbjct: 484 FT------------------FHLRLSTRPEKYLGELEMWENAEKQLADSLNSFGEPWTLN 525

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    ++    +  F    G+ 
Sbjct: 526 PGDGAFYGPKIDI---TISDALKRQHQCATIQLD----FQLPIRF----NLNFISESGEK 574

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +     G++  + A++  S  GK   W        I +           +  EK+
Sbjct: 575 KRPVIIHRAIFGSVERMIAILTESFAGKWPFWLSPRQAIVIPVGP------QFDEYSEKV 628

Query: 369 YARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              + + G     D D G+ +  +   A L  +   ++VG K  + + V ++ R   +  
Sbjct: 629 KKEIYEAGFMCDVDVDHGDTLNKKIRNAQLAQYNFILVVGDKEKTANTVNVRTRDNNVHG 688

Query: 428 DMSLEEVINYASHR 441
           + S+EE I      
Sbjct: 689 EFSIEETIQRLQKL 702


>gi|113954220|ref|YP_731070.1| threonyl-tRNA synthetase [Synechococcus sp. CC9311]
 gi|123031674|sp|Q0I902|SYT_SYNS3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113881571|gb|ABI46529.1| threonyl-tRNA synthetase [Synechococcus sp. CC9311]
          Length = 617

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/448 (15%), Positives = 137/448 (30%), Gaps = 36/448 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++     +   RD       L L + +  +   G+  W P G +    +    R+   
Sbjct: 195 LSEHKRRKEEALRRDHRRLGKDLDLFS-IEDEAGAGLVFWHPRGARMRLLIEDFWRQAHF 253

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +    LW  SG  D Y + M    + +++     P +       + S +
Sbjct: 254 EGGYELLYTPHVADISLWKTSGHLDFYAESMFGPMEVDERQYQLKPMNCPFHVLTYASKL 313

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP  + ++   +R E      G+MR R F   DA+ F L  + S        +  
Sbjct: 314 RSYRELPIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCLPEQISDE-----ILRI 368

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L +  R+                     + +   T   +        +            
Sbjct: 369 LNLTERILSTFDFSN-------------YEINLSTKPDKAIGDDAVWELATKGLIEALKR 415

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D++    + S   ++    F    ++ L   A 
Sbjct: 416 KGWAYKIDEGGGAFYGPKIDL---KIEDAIGRMWQCSTIQLD----FNLPERFELDYIAA 468

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 +   +   +      R    + E+                              
Sbjct: 469 --DGSKQRPIMIHRAIFGSLERFFGIMTENYAGDFPFWLAPEQIRLLPVT-------DEV 519

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E+   +L   G     D  G+++G    + + +  P+  ++G+K        ++ R
Sbjct: 520 LGYAEEFQNQLKAAGIRASIDRSGDRLGKLIRIGEKMKIPVLAVIGAKEAEQGAASLRSR 579

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
             G    ++ E +I  A     + +  L
Sbjct: 580 RDGDLGVITKERLIATAQSANQDRKASL 607


>gi|163840754|ref|YP_001625159.1| threonyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
 gi|162954230|gb|ABY23745.1| threonyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
          Length = 700

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/451 (14%), Positives = 128/451 (28%), Gaps = 49/451 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L +    +   G+  + P G      +    R      G   
Sbjct: 270 RIAEAERRDHRKLGTELDLFS-FPDELGSGLPVFHPKGGIIRKEMEDYSRARHIAAGYEF 328

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTD 116
           +  P +  A+L+  SG  D Y   M                 +  +     P +  +   
Sbjct: 329 VYTPHITKANLYEVSGHLDWYRDGMFPPMHVDEELNEDGTVRKPGQDYYLKPMNCPMHNL 388

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP   ++    +R E      G+ R R     DA+ +    +       
Sbjct: 389 IFRSRGRSYRELPLRLFEFGSVYRYEKSGVIHGLTRVRGMTQDDAHIYCTRDQMKDEL-T 447

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                 L +    GL+   +   +                    +   S D  +    + 
Sbjct: 448 STLNFVLGLLKDYGLEDFYLELST----------------KDPEKYVGSDDVWEEATRTL 491

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                +            A Y       + +  D++    ++S   ++    F    ++ 
Sbjct: 492 AEVAAESGLDLVPDPGGAAFYGPKI---SVQARDAIGRTWQMSTIQLD----FNLPERF- 543

Query: 296 LPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 ++ ADG       +     G++    AV+   + G    W   V    I +   
Sbjct: 544 ---ELEYQAADGSRQRPVMIHRALFGSVERFMAVLTEHYAGAFPAWLAPVQVVGIPVA-- 598

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D    +  +L   G     D   ++   +   A     P  +I G   V   
Sbjct: 599 ----ETFNDYMADVVGQLRSAGVLAELDISSDRFPKKIRTASKEKIPFVLIAGGDDVEAG 654

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V  + R       + + E +        + 
Sbjct: 655 AVSFRFRDGSQDNGVPVAEAVQRIVRAVQDR 685


>gi|298252757|ref|ZP_06976551.1| threonyl-tRNA synthetase [Gardnerella vaginalis 5-1]
 gi|297533121|gb|EFH72005.1| threonyl-tRNA synthetase [Gardnerella vaginalis 5-1]
          Length = 660

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 62/457 (13%), Positives = 135/457 (29%), Gaps = 49/457 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      ++ L +    +   G+  + P G   ++ +    RE+  +  
Sbjct: 228 YTTRMEEAAKRDHRKLGQEMDLFS-FPDEIGPGLAVFHPKGAAIINAMEDYSREQHRKHH 286

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R        P +  +
Sbjct: 287 YSFVQTPHITKGGLYETSGHLQWYKDGMYPPMKLDEERDENGNVTRQGADYYLKPMNCPM 346

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +    
Sbjct: 347 HNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHIYCTREQMRDE 406

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    L +    GL    +   +                  E +   S +  +   
Sbjct: 407 L-KSLLNFVLGLLKDFGLNDFYLELST----------------KDEHKFVGSDEIWEEAT 449

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +      +            A Y       + +  D++    +VS   ++    F    
Sbjct: 450 NTLAEVAKESGLELVDDPGGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNLPE 502

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       +  ADG       +     G++    A++   + G    W   V    + +
Sbjct: 503 RF----KLEYIAADGSHQRPVMIHRALFGSIERFFAILLEHYAGAFPAWLAPVQVTGVPV 558

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                         +K+ + L +       D+  ++ G +   A     P  +I G + V
Sbjct: 559 A------DEFAPHLQKLISDLEENMVRCEMDNSDDRFGKKIRNASKSKVPFTLIAGEEDV 612

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           +++ V  + R       + + +   +          V
Sbjct: 613 NNNAVSFRFRDGSQLNGVPVSQAKEWILSIIKQRVQV 649


>gi|241895744|ref|ZP_04783040.1| prolyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
 gi|241870787|gb|EER74538.1| prolyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
          Length = 570

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 114/235 (48%), Positives = 155/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE+ SH++MLR G + Q + G+Y++LPL Q+ L+ +NAIIREE
Sbjct: 1   MKQSKVFIPTLRETPADAEVISHQMMLRAGYVRQVTAGVYAYLPLAQRVLNKINAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  AIEM+ P L  A+LW ESGRY++YG  + +L +R+ + MI GPTHEE MT + R 
Sbjct: 61  MEKIDAIEMTAPVLLPAELWEESGRYETYGPNLFKLKNRHGRDMILGPTHEETMTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ K RDE RPRFGV+R REF+MKDAYSF +   G   +Y KM  +
Sbjct: 121 DIKSYKRLPLTLYQIQTKLRDEDRPRFGVLRGREFIMKDAYSFSIDEAGLDDAYKKMETA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y+ IF R+GL    +  ++G +GG  S EF   A  GE  +  S    ++    E
Sbjct: 181 YVNIFDRVGLNYRVIVGDAGAMGGSDSKEFSAPAAAGEDTIAYSD-ESEYAANLE 234



 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 4/231 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK-- 275
           E ++   +   D        +      LN+ V++        +DV   +  D   +NK  
Sbjct: 341 EVKIIADEWVTDMANIVVGGNEAGFHYLNANVDR-DFRIDEVADVRIAREGDPAIDNKGH 399

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               +GIEVGHIF  GT+YS  M A    A+G+   V MGSYGIG  R++AA+ E + D 
Sbjct: 400 LQFTKGIEVGHIFKLGTRYSKSMGAQVLDANGRQADVIMGSYGIGVSRLLAAIAEQNADE 459

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G+ WP +VAP+ + L+ IK  D+      + +   L   G +V  DD  E+ G +FA +
Sbjct: 460 HGLSWPAAVAPWDVHLVPIKYKDETQAKLTDDLNESLVAAGYEVLVDDRNERPGVKFADS 519

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           DL+G P++V VG K  SD  VE+K R      ++  +E+++        N+
Sbjct: 520 DLIGLPVRVTVGKK-ASDGIVEVKLRQADEAIEVRADELVSTLQVFLDGNK 569


>gi|262202081|ref|YP_003273289.1| prolyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
 gi|262085428|gb|ACY21396.1| prolyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
          Length = 576

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 105/270 (38%), Positives = 155/270 (57%), Gaps = 7/270 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+++P DAE+ SHKL++R G + + + G+Y+WLPLG + L  +  ++REE +
Sbjct: 1   MSTLFLRTLRDDPADAEVPSHKLLVRGGYVRRAAPGVYTWLPLGLRVLKAIENVVREEMD 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+ +P L   D +  +GR+  YG  + RL DR    M+ GPTHEE+  ++ +   
Sbjct: 61  AIGAQEILLPALLPRDPYETTGRWTEYGDALFRLKDRKGADMLLGPTHEELFANLVKGEY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+MKDAYSFDL  +G K SY     +Y 
Sbjct: 121 SSYKDLPVILYQIQTKYRDEERPRAGILRGREFVMKDAYSFDLDDDGLKVSYQAHREAYQ 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFDD 241
           R+F RLG+K + + A SG +GG  S EF+  ++ GE   V C +      + +  T   +
Sbjct: 181 RLFARLGVKYVIVAATSGAMGGSASEEFLAESEVGEDTFVRCLESGYAANVEAVITPAPE 240

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  +     P A T D  +    D+L
Sbjct: 241 ------PIPFDGLPVATTYDTGDTPTIDTL 264



 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 93/183 (50%), Gaps = 4/183 (2%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+ K   VSA+GIE+GHIF  G KY+        G  GK   + MG
Sbjct: 390 GTIEAAEVRDGDPSPDGKGPLVSAKGIEIGHIFQLGQKYTDAFEVDVLGESGKPVRLTMG 449

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R+VA + E  HD KG+ WP  VAPF + L+     D     A E +   L   
Sbjct: 450 SYGVGVSRLVAVIAEQCHDDKGLRWPREVAPFAVHLVIANKDDAAVTGAGE-LAEDLDAA 508

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  DD     G +F  A+LLG P  V+VG +  ++  +EI+ R TG   +++++  +
Sbjct: 509 GVSVLLDDRKASPGVKFKDAELLGMPTVVVVG-RGYANGTIEIRDRFTGETTEVAVDSAV 567

Query: 436 NYA 438
           +  
Sbjct: 568 DAI 570


>gi|283783304|ref|YP_003374058.1| threonine--tRNA ligase [Gardnerella vaginalis 409-05]
 gi|283441631|gb|ADB14097.1| threonine--tRNA ligase [Gardnerella vaginalis 409-05]
          Length = 676

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 62/457 (13%), Positives = 135/457 (29%), Gaps = 49/457 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      ++ L +    +   G+  + P G   ++ +    RE+  +  
Sbjct: 244 YTTRMEEAAKRDHRKLGQEMDLFS-FPDEIGPGLAVFHPKGAAIINAMEDYSREQHRKHH 302

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R        P +  +
Sbjct: 303 YSFVQTPHITKGGLYETSGHLQWYKDGMYPPMKLDEERDENGNVTRQGADYYLKPMNCPM 362

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +    
Sbjct: 363 HNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHIYCTREQMRDE 422

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    L +    GL    +   +                  E +   S +  +   
Sbjct: 423 L-KSLLNFVLGLLKDFGLNDFYLELST----------------KDEHKFVGSDEIWEEAT 465

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +      +            A Y       + +  D++    +VS   ++    F    
Sbjct: 466 NTLAEVAKESGLELVDDPGGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNLPE 518

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       +  ADG       +     G++    A++   + G    W   V    + +
Sbjct: 519 RF----KLEYIAADGSHQRPVMIHRALFGSIERFFAILLEHYAGAFPAWLAPVQVTGVPV 574

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                         +K+ + L +       D+  ++ G +   A     P  +I G + V
Sbjct: 575 A------DEFAPHLQKLISDLEENMVRCEMDNSDDRFGKKIRNASKSKVPFTLIAGEEDV 628

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           +++ V  + R       + + +   +          V
Sbjct: 629 NNNAVSFRFRDGSQLNGVPVSQAKEWILSIIKQRVQV 665


>gi|182435611|ref|YP_001823330.1| prolyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|226701340|sp|B1VYP2|SYP_STRGG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|178464127|dbj|BAG18647.1| putative prolyl-tRNA synthetase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 567

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 110/263 (41%), Positives = 154/263 (58%), Gaps = 4/263 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + +++ GI+SWLPLG+K LDN++ ++REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRNAAGIWSWLPLGKKVLDNISNVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR++ YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 66  DAIGAQEVLLPALLPKEPYEASGRWEEYGDLLFRLKDRKGGDYLLGPTHEEIFTQTVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG  HSY     +Y
Sbjct: 126 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTTDEGLAHSYALHRAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
           ++IF RLGL    + A SG +GG  S EF+  A  GE   F      D+   +E   F  
Sbjct: 186 IKIFERLGLDHRIVSAVSGAMGGSASEEFLAPAAAGE-DTFADCPNCDYAANTEAVTFAL 244

Query: 240 -DDIISLNSIVEQWTAPYAATSD 261
                S +  VE+   P   T +
Sbjct: 245 APVDGSAHGAVEELDTPDTPTIE 267



 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 6/186 (3%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           DV   +  D  P+     V  R IE+GHIF  G KY+        G  GK   V MGSYG
Sbjct: 385 DVVVVEEGDPCPKCGTGLVLDRAIEIGHIFQLGRKYADTFQLDVLGQQGKPVRVTMGSYG 444

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R VAA+ E + D KG+ WP  +AP  +    + A   +  +    +  +L+  G  
Sbjct: 445 IGVSRAVAALTEQTADDKGLCWPREIAPADVH--VVAAGKALQTELALDVSEKLNAAGLR 502

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V  DD  G   G +F  ++L+G P  ++ G +  +D  +E+K R TG RE+++++E I  
Sbjct: 503 VLVDDRPGVSPGVKFTDSELIGVPKILVAGRRS-ADGVLELKDRRTGEREELTVDEAIAR 561

Query: 438 ASHRFS 443
            +   +
Sbjct: 562 LTADLA 567


>gi|229817631|ref|ZP_04447913.1| hypothetical protein BIFANG_02901 [Bifidobacterium angulatum DSM
           20098]
 gi|229785420|gb|EEP21534.1| hypothetical protein BIFANG_02901 [Bifidobacterium angulatum DSM
           20098]
          Length = 677

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 66/459 (14%), Positives = 134/459 (29%), Gaps = 50/459 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDSMYPPMRLDEEKDENGNVTKQGFDYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 420

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 421 DEL-KNLLTFVLGLLKDFGLDDFYLELST----------------KDPHKYVGSDEIWEE 463

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +      D            A Y       + +  D++    +VS   ++    F  
Sbjct: 464 ATNTLAEVAKDSGLELVDDPCGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 516

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
             ++       +  ADG       +     G++    AV+   + G    W   V    +
Sbjct: 517 PERF----QLEYIAADGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAPVQVLGV 572

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +              +K  A L +       D   ++ G +   A     P  +IVG +
Sbjct: 573 PVA------DEFAPHLQKFIASLEEETVRCEIDLSDDRFGKKIRNASKSKAPFILIVGEE 626

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            ++++ V  + R       + ++E              V
Sbjct: 627 DMNNNAVSFRFRDGSQLNGVPVDEAKANIMKVIKKRVQV 665


>gi|206895814|ref|YP_002247094.1| prolyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
 gi|226699133|sp|B5Y8J7|SYP_COPPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|206738431|gb|ACI17509.1| prolyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
          Length = 558

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 105/232 (45%), Positives = 150/232 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK+F   L+E+P+DAE  SHKL++R  MI Q + G+Y++LP G K L  +  ++REE
Sbjct: 1   MRASKFFYKTLREDPKDAEATSHKLLIRASMIKQIASGVYAFLPFGHKVLKKIETVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  EM++  +  A++W ++GR++ YG +M++  DR ++    GPTHEE +T +   
Sbjct: 61  MDRIGGQEMTMSIMMPAEMWKKTGRWELYGDDMIKFKDRKEQDFCLGPTHEEQITTLAGQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E  K +Y+++  +
Sbjct: 121 LISSYKQLPQLVYQIQTKFRDEPRPRFGLIRLREFVMKDAYSFHDSEESLKTTYDQVLNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           Y RI  R+GL    + A+ G IGG LSHEFIV A+ GE+ VF          
Sbjct: 181 YKRILERIGLNYEVVAADPGQIGGTLSHEFIVPAEVGESTVFKCDSCGYVAT 232



 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 75/192 (39%), Positives = 106/192 (55%), Gaps = 8/192 (4%)

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           VE    P+    D+      D  P+      S  G+EVGHIF  GT+YS P+ A +   D
Sbjct: 366 VEVSELPFHEIVDLAEVAEGDLCPQCGSPLRSFTGLEVGHIFRLGTRYSEPLEAFYHSED 425

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G+     MG YGIG  R+V+AVIE  HD  GI+WP SVAP+ + +I I   +       +
Sbjct: 426 GERKPFIMGCYGIGVTRLVSAVIEQHHDDFGIVWPWSVAPYHVVIIPIGDVEAQV----Q 481

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++   LS  G DVF DD  E+ G +F  ADL+GFP++++V +K   + KVEIK R TG  
Sbjct: 482 ELENTLSSAGLDVFVDDRDERPGVKFVDADLIGFPVRLVVNAK--KEGKVEIKFRKTGET 539

Query: 427 EDMSLEEVINYA 438
             +  E+V++  
Sbjct: 540 LLVGQEDVLDTV 551


>gi|313891975|ref|ZP_07825576.1| proline--tRNA ligase [Dialister microaerophilus UPII 345-E]
 gi|313119618|gb|EFR42809.1| proline--tRNA ligase [Dialister microaerophilus UPII 345-E]
          Length = 574

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 111/273 (40%), Positives = 162/273 (59%), Gaps = 2/273 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P L+E P +A + SHK ML+ GMI + S G YS+LPL  +++  +  II EE
Sbjct: 1   MKASKLYAPTLREIPSEAVVISHKYMLKAGMIRKISSGFYSYLPLAWRSIKKIENIIHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ +   Q A++W ++GR+D YG+EM RL DR+++     PTHEE++T +   
Sbjct: 61  MAKIESQEILMSIAQPAEIWQQTGRWDVYGEEMFRLKDRHERDYCLAPTHEELVTTLVHM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY+ LP + YQIQ K+RDE RPRFG+MRSREF+MKDAY+FD+  EG    Y+ M+ +
Sbjct: 121 DTFSYKQLPVSLYQIQNKYRDEKRPRFGLMRSREFIMKDAYTFDVDEEGLDKQYHDMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF + GL    + A+SG IGG  SHEF VLA+ GE  +   +   +F    E    D
Sbjct: 181 YTNIFTKCGLNFRTVIADSGAIGGSSSHEFEVLAEAGEADIVY-EVDGEFAANVEAVIPD 239

Query: 241 DII-SLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            I  +L + +E+          + +   F  LP
Sbjct: 240 TISCNLKNDLEKEIVETPGQETIEDVCKFLGLP 272



 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/189 (32%), Positives = 101/189 (53%)

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            T  + ++         +    +GIEVG +F  GTKYS  ++ T+   +GK   + MG Y
Sbjct: 382 ETIRLIDKNDVSPWTGKEIEFKKGIEVGQVFKLGTKYSESLNCTYLDKNGKSKPMVMGCY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R +AA IE +HD  GIIW  S+AP+++ +I     +       E++Y  +SK   
Sbjct: 442 GIGVTRTMAASIEQNHDKDGIIWAVSIAPYEVVIIPANNKNSEVMKVAEELYRNMSKENN 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           ++ +DD  E+ G +F  ADL+G+P++V +G K+  + KVEIK R TG   ++  ++    
Sbjct: 502 EIVFDDRNERAGIKFKDADLIGYPIRVTIGKKWEENGKVEIKIRRTGEVIEIDYKDCKAK 561

Query: 438 ASHRFSNNR 446
                 + R
Sbjct: 562 VESILDDLR 570


>gi|88608148|ref|YP_506185.1| threonyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
 gi|123763729|sp|Q2GEB1|SYT_NEOSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|88600317|gb|ABD45785.1| threonyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
          Length = 637

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 151/442 (34%), Gaps = 41/442 (9%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L +   RD       + L    + + ++G   W   G      +   IR +   
Sbjct: 232 EAYLSFLHEAKKRDHRAIGKTMELF--HLQEEAQGQVFWHENGFILYRVLENYIRNKLKT 289

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + +  LW  SG +  + + M  +   +D      P +     ++++  +K
Sbjct: 290 HGYREVKTPLVYNKCLWERSGHWSKFKENMF-VIRSDDGEFSLKPMNCPAHIEVYKQSLK 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +  +  R+E      G+MR R F+  DA+ F    +    +         
Sbjct: 349 SYRDLPLRLAEFGMCHRNEASGALHGLMRVRGFVQDDAHIFCTPQQICDETIAF-CGLLK 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++  LG   + +R    P     + E                   D    +  +  D  
Sbjct: 408 EVYRDLGFTEVEVRFSDRPEVRLGNDE-----------------TWDKAEIALKSAMDKA 450

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             + ++     A Y    +     L D+L    +     ++    F    +    + AT+
Sbjct: 451 GLIYTLNPGEGAFYGPKIEF---VLVDALKRKWQCGTLQVD----FVLPER----LDATY 499

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +G K H V +    +G       ++   +DGK  +W        +++       +  
Sbjct: 500 IDHEGKKQHPVMLHRAILGTFERFLGILIEHYDGKFPLWLAPTQVAVLTIT------EKV 553

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + +   LSK G     D   ++I  +         P+  I+G      + V ++  
Sbjct: 554 EEYAKSLLNHLSKTGIRAVSDFSNQRIDYKIRYHTTRRVPILWIIGRIEEKSNSVTVRRM 613

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            +   E  +++  +      F+
Sbjct: 614 GSSESEVKTVDTALGDILREFN 635


>gi|86606966|ref|YP_475729.1| prolyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
 gi|114152267|sp|Q2JSB6|SYP_SYNJA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|86555508|gb|ABD00466.1| prolyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 609

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 109/241 (45%), Positives = 147/241 (60%), Gaps = 6/241 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+E+P +AE+ SHKL+LR G I + S GIY++LPL  + L  ++ I+REE 
Sbjct: 6   RLSQMLFVTLREDPAEAELISHKLLLRGGFIRRLSPGIYTYLPLLWRVLQKISDIVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDIF 118
           N  GA E  +P LQ A++W ESGR+D Y +    M  L DR  +    GPTHEEV+T + 
Sbjct: 66  NAIGAQECLLPQLQPAEIWRESGRWDVYTQAEGIMFALKDRQGREQALGPTHEEVITLLA 125

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           R  I+SYR LP   YQIQ KFRDE+RPRFG++R REFLMKDAYSF    E  + +Y  M+
Sbjct: 126 RDLIRSYRQLPQILYQIQTKFRDEIRPRFGLLRGREFLMKDAYSFHANEESLRQTYQDMY 185

Query: 179 VSYLRIFHRLGLKSIPMRAESGPI--GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
            +Y RI  R GL+   + A++G I      S EF+VLA  GE ++  + D   +    E 
Sbjct: 186 RAYGRILRRCGLEFCVVEADAGAIGGPSAASQEFMVLASAGEDEILYTPDGS-YAANVEK 244

Query: 237 T 237
            
Sbjct: 245 A 245



 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 102/196 (52%), Gaps = 4/196 (2%)

Query: 251 QWTAPYAATSDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
               P A   DV   +  D     P+    +ARGIE+GHIF  G K+SLPM A+F    G
Sbjct: 408 GEQYPLAEVVDVRKAQAGDRCLLNPDQILETARGIEIGHIFQLGLKFSLPMRASFTDEQG 467

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            +  + MG YGIG  R+  A +E SHD  GIIWP ++AP+ + ++     D       EK
Sbjct: 468 SEQPLWMGCYGIGVSRLAQAAVEQSHDANGIIWPVAIAPYHVVVVVPNVSDPEQTKVAEK 527

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L+  G +  WDD  E+ G +F  ADL+G P ++  G + +   KVE+  R TG   
Sbjct: 528 LVQELAAAGIETLWDDRDERAGVKFKDADLIGIPYRLTTG-RSLKQGKVELAERATGQAV 586

Query: 428 DMSLEEVINYASHRFS 443
           ++ +EEV+     R +
Sbjct: 587 EIPIEEVVATLKERIA 602


>gi|318041217|ref|ZP_07973173.1| threonyl-tRNA synthetase [Synechococcus sp. CB0101]
          Length = 570

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 128/424 (30%), Gaps = 37/424 (8%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +    +E  R D       L L + +  +   G+  W P G +    +  + RE     G
Sbjct: 158 YKRRQEEAKRRDHRRIGTDLDLFS-IEDEAGAGLVFWHPRGARMRLLIENLWRELHFAAG 216

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +    LW  SG  D Y + M      +++     P +       + S ++SY
Sbjct: 217 YELLYTPHVADISLWKTSGHLDFYSESMFGPMQVDEREYQLKPMNCPFHVLTYASTLRSY 276

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + ++   +R E      G+MR R F   DA+ F L  + S      +     +I
Sbjct: 277 RELPIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHVFCLPDQISDE-ILAILNLTEQI 335

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                 +   +   + P                           +          D    
Sbjct: 336 LSTFDFRHYEINLSTRPEKS-----------------IGEDAVWELATQGLIEALDRKGW 378

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D++    + S   ++    F    ++ L   A    
Sbjct: 379 AYKIDEGGGAFYGPKIDL---KIEDAIGRMWQCSTIQLD----FNLPERFDLEYVAA--D 429

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              +   +   +      R    + E+                              RD 
Sbjct: 430 GSRQRPIMIHRAIFGSLERFFGIMTENYAGDFPFWLAPEQIRLLPVT-------DEVRDY 482

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              + A L   G     D  G+++G      + +  P+  ++G+K     ++ ++ R  G
Sbjct: 483 AAGVAAELQAAGVRASIDHSGDRLGKLIRNGEQMKIPVLGVIGAKEAESGQISLRSRRDG 542

Query: 425 IRED 428
               
Sbjct: 543 DLGS 546


>gi|260578838|ref|ZP_05846745.1| threonine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
 gi|258603136|gb|EEW16406.1| threonine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 667

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 64/458 (13%), Positives = 135/458 (29%), Gaps = 49/458 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L +    +   G   + P G      +    R+   
Sbjct: 230 LAEYQTMMAEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPDGGIVRLEMEEHSRKRHI 288

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND------------KAMIYGPTH 110
            +G   ++ P +   DL+ +SG  D Y   M      +             +     P +
Sbjct: 289 ASGYSFVNTPHVTKGDLFQKSGHLDFYADGMFPPMQLDGETDDEGNVTKPAQDYYAKPMN 348

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
             +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T + 
Sbjct: 349 CPMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIYC-TEDQ 407

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
            +     +    + +    GL    +   +                    +   S +  +
Sbjct: 408 LEQELTTVLEFIISLLRDYGLDDFYLELST----------------KDPNKFVGSDEIWE 451

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                                   A Y       + +  D++    ++S   ++    F 
Sbjct: 452 RSTEILERVATKSGLELVPDPAGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FN 504

Query: 290 FGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++    +  +   DG       +     G++     V+   + G    W        
Sbjct: 505 LPERF----NLEYTAPDGSKQRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVVG 560

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           I +           +  E   A L   G     D   +++  +         P  ++VG 
Sbjct: 561 IPVA------DEFNEYLENFAADLRAQGIRAEVDTSDDRMQKKIRNHTTGKVPFMLLVGG 614

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + V  + V  +         +  E+ +   S+  +  R
Sbjct: 615 RDVEANAVSFRFLDGTQVNGVPREDALRIISNWIAERR 652


>gi|39725443|emb|CAE45679.1| Threonyl-tRNA synthetase [Streptomyces parvulus]
          Length = 675

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 145/441 (32%), Gaps = 35/441 (7%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L      +  +G+  WLP G    D +    R+ + + G 
Sbjct: 254 LAALEEAAKRDHRRIGEELDLFA-FNKEIGRGLPLWLPNGAIIRDELEDWARKTERKLGY 312

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P +   DL+  SG    Y +++    D + +     P +      ++++   SYR
Sbjct: 313 KRVVTPHITQEDLYYLSGHLPYYAEDLYAPIDIDGEKYYLKPMNCPHHHMVYKARPHSYR 372

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP+   +    +R E   +  G+MR+R F   DA+ +    +        M +      
Sbjct: 373 DLPYKVAEYGTVYRFERSGQLHGMMRTRGFSQNDAHIYCTADQAKDQFLEVMRMHADYYR 432

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                    + A       D  H+   + +  E     + +  D P   +          
Sbjct: 433 TLGISDFYMVLALRDSANKDKYHDDEQMWEDAERITREAMEESDIPFQIDL--------- 483

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                   A Y    D     +     +    S   +++     FG         T+  +
Sbjct: 484 -----GGAAHYGPKVDFMIRAVT---GKEFAASTNQVDLYTPQRFG--------LTYHDS 527

Query: 306 DGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG +   V +    +G+     A +     G   +W        I ++      +   D 
Sbjct: 528 DGTEKPVVVIHRAPLGSHERFTAYLTEHFAGAFPVWLAPEQVRIIPIV------EELTDY 581

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E++   L         D    ++ ++   A     PL V+VG +      V ++ R +G
Sbjct: 582 AEEVRDMLLDADVRADVDAGDGRLNAKVRAAVTRKIPLVVVVGRREAEQRTVTVRDR-SG 640

Query: 425 IREDMSLEEVINYASHRFSNN 445
               MSLE+ + + +      
Sbjct: 641 EETPMSLEKFVAHVTGLIRTK 661


>gi|66362768|ref|XP_628350.1| threonyl-tRNA synthetase (RNA binding domain TGS+HxxxH+tRNA
           synthetase) [Cryptosporidium parvum Iowa II]
 gi|46229397|gb|EAK90215.1| threonyl-tRNA synthetase (RNA binding domain TGS+HxxxH+tRNA
           synthetase) [Cryptosporidium parvum Iowa II]
          Length = 763

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 80/450 (17%), Positives = 147/450 (32%), Gaps = 40/450 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  +Y   + +   RD  +    L L        S G   WLP G +  + +   IR E 
Sbjct: 319 RLDEYLNMLEEAKKRDHRLLGSNLQLF-FFDSNVSPGSCFWLPAGARLYNKLMDFIRNEY 377

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P + S DLW  SG Y +Y + M  + D  +K     P +      +F+  
Sbjct: 378 RIREFTEVITPNIFSCDLWKTSGHYFAYKENMF-IFDVEEKEWGLKPMNCPGHCVMFKHM 436

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR LP       +  R+E      G+ R R F   DA+ F    +  +  +      
Sbjct: 437 NPSYRQLPIRLADFGVLHRNEFSGALNGLTRVRRFQQDDAHIFCTPEQIQEEVFK-ALDF 495

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+ +LG                    F +   T   +   +++       +  +  D
Sbjct: 496 LFFIYGQLGFT------------------FDLFLSTMPKEHLGTEEQWKEAENALKSALD 537

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPM 298
                  +     A Y    D+    L+D+L    +     ++      F    +    +
Sbjct: 538 KTGRDWKLNPGDGAFYGPKIDIM---LWDALKRQHQCGTIQLDFQLPIRFNLQYRTDENI 594

Query: 299 SATFKGADGKDHY-----------VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           S      +    +            Q     +   R +   +E             +  +
Sbjct: 595 SEESTNQEQPPSHQNADQNPDNSLKQGYRRPVIIHRAILGSVERMSAVILEHTGGKLPFW 654

Query: 348 KISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
                 I     +   +  + +   L + G DV  D     I  +   + LL +   +++
Sbjct: 655 LSPRQAIVLSISEKTVEYAKSVERELCRRGFDVSGDYSAATINKKIRESQLLQWNYMLVI 714

Query: 407 GSKFVSDSKVEIKHRLTGI-REDMSLEEVI 435
           G     D KV ++ R T I +E ++L+++I
Sbjct: 715 GENEARDKKVTLRCRDTTIPQELLTLDQLI 744


>gi|241668104|ref|ZP_04755682.1| prolyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876639|ref|ZP_05249349.1| prolyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842660|gb|EET21074.1| prolyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 565

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 107/241 (44%), Positives = 160/241 (66%), Gaps = 1/241 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+P+G K L  +  I+REE
Sbjct: 1   MKATQTLIATTKELPKEAVLTSHQYMLKAGLIKKLASGIYTWMPIGLKVLQKIQNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSVLPSELLQETHRWDKFGPELLKLKDRHERDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    +   ++YNKM  +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSQCLHNTYNKMHET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  ++GL   P+RA++G IGGD SHEF VLA+ GE  + C  +  D+    E   + 
Sbjct: 181 YCNILDKIGLVYRPVRADTGAIGGDNSHEFQVLANAGE-DIICYSNSSDYAANIELATYA 239

Query: 241 D 241
            
Sbjct: 240 K 240



 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 67/183 (36%), Positives = 105/183 (57%), Gaps = 3/183 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+N        GIEVGHIF     YS PM+A     DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDNNGTLELTNGIEVGHIFELEDVYSKPMNANIISQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVG 376
           G G  RV+AA IE SHD  GIIWP+++AP++++++ I     +  +   +K+Y  L   G
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPEAIAPYQVAILPINYNKSESVKQTADKLYQELLAKG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD G + G  FA ADL+G+   V++G + +    +E K+R T  +++++LE++++
Sbjct: 503 IDVILDDRGARPGVMFADADLIGYSHHVVIGDRLLEQGLIEYKNRKTQEKQEITLEKLLD 562

Query: 437 YAS 439
             +
Sbjct: 563 ILA 565


>gi|254580109|ref|XP_002496040.1| ZYRO0C09086p [Zygosaccharomyces rouxii]
 gi|238938931|emb|CAR27107.1| ZYRO0C09086p [Zygosaccharomyces rouxii]
          Length = 716

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 164/447 (36%), Gaps = 43/447 (9%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +  L   M ++ S G   WLP G +    +  +++ E  + G 
Sbjct: 299 LKFLEEASLRDHRRIGREQELF--MFNEMSPGSCFWLPHGTRIYSTLVDLLKNEYRKRGY 356

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + ++ LW  SG +  Y + M       +      P +      +F+S  +SYR
Sbjct: 357 EEVITPNMYNSKLWETSGHWGHYKENMFTFEVEKEM-YGLKPMNCPGHALMFKSRERSYR 415

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP+      +  R+E      G+ R R F   DA+ F  + +  +    ++F       
Sbjct: 416 ELPWRVADFGVIHRNEFSGALTGLTRVRRFQQDDAHIFCRSDQIGQE-IERIFDFLSF-- 472

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                           I G    EF +   T   +     +  +    +     +     
Sbjct: 473 ----------------IYGVFGFEFKMELSTRPEKYVGKLETWNAAEATLEAALNKWGGK 516

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             +     A Y    D+    + D+L    + +   ++    F    +++L   +     
Sbjct: 517 WELNPADGAFYGPKIDIM---ISDALRRWHQCATIQLD----FQLPDRFALEYKSKDNDN 569

Query: 306 DGKDH--YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           +G+ +   V +    +G++  + A++    +     WP  ++P +I ++ +       + 
Sbjct: 570 EGETYERPVMIHRAILGSVERMTAILT---EHFAGKWPFWLSPRQILVVPVGVK---YQP 623

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  ++   G     D  G  +  +     +L +    IVG + +++  V I++R  
Sbjct: 624 YAQEVRDKMHNAGFYADVDLSGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDV 683

Query: 424 GIRE----DMSLEEVINYASHRFSNNR 446
             ++     +S+E V+       S+ R
Sbjct: 684 MEQQGKNATVSVETVLEQLKKLKSDMR 710


>gi|167627536|ref|YP_001678036.1| prolyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189083499|sp|B0TXX4|SYP_FRAP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167597537|gb|ABZ87535.1| prolyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 565

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 108/241 (44%), Positives = 160/241 (66%), Gaps = 1/241 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++  +   +E P++A + SH+ ML+ G+I + + GIY+W+P+G K L  +  I+REE
Sbjct: 1   MKATQTLIATTKELPKEAVLTSHQYMLKAGLIKKLASGIYTWMPIGLKVLQKIQNIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GA E+ +P++  ++L  E+ R+D +G E+L+L DR+++   YGPTHEE + D+ R 
Sbjct: 61  MNKAGASELLLPSVLPSELLQETHRWDKFGPELLKLKDRHERDFCYGPTHEEPIVDMARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE+RPRFGVMR+REF+MKDAYSF    E   ++YNKM  +
Sbjct: 121 TIKSYKQLPLNLYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHENSECLHNTYNKMHET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  ++GL   P+RA++G IGGD SHEF VLA+ GE  + C  +  D+    E   + 
Sbjct: 181 YCNILDKIGLVYRPVRADTGAIGGDNSHEFQVLANAGE-DIICYSNGSDYAANIELATYA 239

Query: 241 D 241
            
Sbjct: 240 K 240



 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/183 (38%), Positives = 104/183 (56%), Gaps = 3/183 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+N        GIEVGHIF     YS PM+A   G DGK   + MG Y
Sbjct: 383 ADIRNVVTGDISPDNNGTLELTNGIEVGHIFELEDVYSKPMNANIIGQDGKSKPMLMGCY 442

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVG 376
           G G  RV+AA IE SHD  GIIWP+++AP++++++ I     +  +   +K+Y  L   G
Sbjct: 443 GFGVSRVMAAAIEQSHDENGIIWPETIAPYQVAILPINYNKSESVKQTADKLYQELLVKG 502

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD G + G  FA ADL+GF   V++G + +    VE K+R T  ++++ LE++ +
Sbjct: 503 IDVILDDRGARPGVMFADADLIGFSHHVVIGDRLLEQGLVEYKNRKTQEKQEIRLEKLFD 562

Query: 437 YAS 439
             +
Sbjct: 563 ILA 565


>gi|325860506|ref|ZP_08173616.1| threonine--tRNA ligase [Prevotella denticola CRIS 18C-A]
 gi|325481987|gb|EGC85010.1| threonine--tRNA ligase [Prevotella denticola CRIS 18C-A]
          Length = 649

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/450 (17%), Positives = 151/450 (33%), Gaps = 38/450 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L      +  KG+  WLP G +    +  ++R      
Sbjct: 232 EYLVMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQDLLRRLLRPY 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P +   +L+V SG Y  YGK+  +       D+  +  P +     +++    
Sbjct: 291 NYQEVITPGIGGKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEVYAYKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    FR E      G+ R R F   DA+ F    +     +       
Sbjct: 351 RSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIFVRPEQVKTE-FETNIDII 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L++F   G  +   +                  D  + + +   D +     +      +
Sbjct: 410 LKVFKTFGFDNYEAQISLR--------------DPNDKEKYIGSDEVWEESEAAIKQACE 455

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++      F          
Sbjct: 456 EKGLKARVELGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLPNRF--------KL 504

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D        +     G++    AV+     G   +W           + I    +
Sbjct: 505 EYTAEDNSKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW------LTPDQVAILPISE 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+ A L         DD  E+IG +    +L   P  VIVG K  ++  V ++
Sbjct: 559 KYNDYAFKVKAYLDAHDVRSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEAAEGLVSMR 618

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  G +  M++E      +   ++    L
Sbjct: 619 QQGGGEQATMTMEAFAERINAEVADQLKTL 648


>gi|329947841|ref|ZP_08294773.1| proline--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328523465|gb|EGF50563.1| proline--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 619

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 93/240 (38%), Positives = 138/240 (57%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+  L+E+P DAE+ASH+L++R   I + + G+Y+WLPLG + L  + AI+R+  
Sbjct: 12  RLSTSFIRTLREDPADAEVASHRLLVRACYIRRAAPGVYTWLPLGLRTLRKIEAIVRQGM 71

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+  P L  ++ +  +GR++ YG  + +L DR D   +  PTHEE+ T   +  
Sbjct: 72  DAMGGQEVHFPALLPSEPYQATGRWNDYGPTLFKLHDRKDGDYLLAPTHEEMFTLAVKDL 131

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   +Y     +Y
Sbjct: 132 YSSYKDLPAIVYQIQTKYRDEARPRAGIIRGREFVMKDSYSFDIDDAGLAAAYQAHRDAY 191

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL  + + A +G +GG  S EF+   + GE     S         +  T   D
Sbjct: 192 ERIFARLGLDYVIVNAMAGAMGGSHSEEFLYPCEIGEDTFVRSSGGYAANAEAVTTVVPD 251



 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 68/198 (34%), Positives = 98/198 (49%), Gaps = 8/198 (4%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+       ARGIE+GHIF  G KYS  +  T    +GK   V MG
Sbjct: 423 GTIEAAEVREGDPAPDGSGPLHLARGIEIGHIFELGRKYSQALGLTVLDENGKARVVTMG 482

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+AA+ E++HD KG+ WP  +AP+ + ++     DQ   D  E++ + L   
Sbjct: 483 SYGIGVSRVMAALAEANHDDKGLSWPVQIAPYHVQVLATG-KDQAVFDVAEQVASALDAD 541

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS---- 430
           G +V +DD      G +FA A+LLG P  ++VG     +  VEI+ R TG R  +     
Sbjct: 542 GVEVLYDDRRKVSAGVKFADAELLGLPYTLVVGRDLAKEGTVEIRDRRTGDRRSVPADAA 601

Query: 431 LEEVINYASHRFSNNRPV 448
             E+           R +
Sbjct: 602 AAELSATVRAALEAARNL 619


>gi|297697604|ref|XP_002825941.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like
           [Pongo abelii]
          Length = 707

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 150/447 (33%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 290 KMMRNWEKFQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLTDFIREE 347

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y + M       D      P +      +F  
Sbjct: 348 YHKRDFTEVLSPNMYNSKLWEASGHWQHYSENMFTFEIEKDT-FALKPMNCPGHCLMFAH 406

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 407 RPRSWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLQ 465

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  +          
Sbjct: 466 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEIEMWNEAEKQLQNSL 507

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 508 MDFGEPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 560

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 561 SK--DGDDKKRPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP--- 612

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C     ++ +   + G     D D    +  +   A L  +   ++VG K   D+ V +
Sbjct: 613 TCEKYALQVSSEFFEEGFMADVDLDHNCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNV 672

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   I  ++ +   I+   +     
Sbjct: 673 RTRDNKIHGEILVTSAIDKLKNLKKTR 699


>gi|116492650|ref|YP_804385.1| prolyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745]
 gi|122265886|sp|Q03FS9|SYP_PEDPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116102800|gb|ABJ67943.1| Prolyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745]
          Length = 571

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 107/263 (40%), Positives = 156/263 (59%), Gaps = 2/263 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +  ++E P DAE+ SHK+MLR G I Q S G+Y++LPL  K +  +  I+REE
Sbjct: 1   MKQSKILISTVKEVPNDAEVLSHKMMLRAGYIRQISAGMYAYLPLAYKVISKIEKIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+EM  P +  A+LW +SGRY++YG+E+ +  +R+D+  I GPTHEE MT + R 
Sbjct: 61  MEAIDAVEMLTPAVLPAELWKQSGRYETYGQELYKFKNRHDRDFILGPTHEETMTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP + YQIQ+K+RDE RPR+G++R REFLMKDAYSF    E    S+     +
Sbjct: 121 EVKSYKKLPLSLYQIQMKYRDEDRPRYGLLRGREFLMKDAYSFHADEETLDQSFRDFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    +  ++G +GG  S EF  +A  GE  +  S++          +   
Sbjct: 181 YQNIFRRCGLNFREIVGDAGAMGGRDSKEFSAIASIGEDTIAYSEESDYAANLEMASSVY 240

Query: 241 DIISLNSIVEQWTAPYAATSDVH 263
             + ++   E+ T    AT D H
Sbjct: 241 TDLQMHENQEELTK--VATDDAH 261



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 2/229 (0%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLPEN 274
               ++   K            + D     N  VE  +T    A      E       + 
Sbjct: 341 PENLKIVADKYIEQMVNSVVGANEDGFHLKNVNVERDFTVDEYADIRTVREGELAPDGKG 400

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                +GIE+GHIF  GTKYS  + A     +G+   V MG YGIG  R+++AV E   D
Sbjct: 401 ALKFTKGIEIGHIFKIGTKYSEALDAKVLDENGRAIPVIMGCYGIGVSRLLSAVSEQQSD 460

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             G++WP ++AP+ + +I + A +    +  ++I   L+K G DV  DD  E+ G +FA 
Sbjct: 461 ENGLVWPKNIAPYDVHVIPVNAKNAEQMEIADQINGELTKAGYDVLVDDRKERAGVKFAD 520

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +DL+G PL+V +G K  S+  VE+K R TG   ++ + E+ N      +
Sbjct: 521 SDLIGIPLRVTIGKK-ASEGIVEVKLRKTGEAVEVKVAELNNTVEILLN 568


>gi|57168347|ref|ZP_00367481.1| threonyl-tRNA synthetase [Campylobacter coli RM2228]
 gi|57020155|gb|EAL56829.1| threonyl-tRNA synthetase [Campylobacter coli RM2228]
          Length = 602

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/437 (16%), Positives = 147/437 (33%), Gaps = 40/437 (9%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L T    +   G+  WL  G +    +  ++ +     G   +
Sbjct: 201 IEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPV 259

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P L  AD W  SG Y +Y + M      +++     P +      I++S ++SYR+LP
Sbjct: 260 RGPELLKADAWKISGHYANYKENM-YFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLP 318

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F++  +  R E      G+ R REF   DA+ F + P   K    ++      +    
Sbjct: 319 LKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFVDNLMKLF 377

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                                      T   +     +  D    +     D+      I
Sbjct: 378 DFSYEMEI------------------STKPAKAIGDDEIWDTATKALKEALDEQGLKYGI 419

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    D+   K+ D+L    +     ++    F    ++       +  ++ +
Sbjct: 420 DEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPERF----KLEYTDSNNE 468

Query: 309 DHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 +    +G+      ++            +       + + I           ++
Sbjct: 469 KKQPVMLHRAILGSFERFIGILTEHC------AGEFPFFIAPTAVGIVPISDSHIAYAKE 522

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I   L ++  D    +  E +  +   A+    P+ +++G + V+   V ++ R    ++
Sbjct: 523 IQRALLELNIDSEVYEKNESLSKKIRTAEKQKLPMILVLGDEEVAKRSVALRDRRAKEQK 582

Query: 428 DMSLEEVINYASHRFSN 444
           ++SL+E I     + S 
Sbjct: 583 NLSLDEFIKLVKEKMSE 599


>gi|227890230|ref|ZP_04008035.1| prolyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
 gi|227849232|gb|EEJ59318.1| prolyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
          Length = 565

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 115/282 (40%), Positives = 155/282 (54%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF+R G+   P+ A+SG +GG  S EF   A  GE  +  +++   +    E     
Sbjct: 181 YLKIFNRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNENGT-YAANLEMAKSI 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           D         +  A  A       EKL D L        + I
Sbjct: 240 DTFKQEPEEAKDLAKVATPGMDTIEKLADFLKVPSTRIVKSI 281



 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 65/192 (33%), Positives = 94/192 (48%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFADIRTANEGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTDTMGADFLDNNGKAK 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++A +E      GI WP  +APF I LI +K  D+   +  EK+  
Sbjct: 435 PVIMGSYGIGVTRMLSAAVEQHLTENGIAWPKEIAPFAIHLIQMKMKDETQTELAEKLEK 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            LS    DV +DD  E+ G +F  ADL+G PL++ +G K   D  VE+K  +     +++
Sbjct: 495 ELSAK-YDVLYDDRNERPGVKFNDADLVGAPLRITIGRK-AKDGIVEVKRPMDEKATEVN 552

Query: 431 LEEVINYASHRF 442
           + ++    +   
Sbjct: 553 ISDLDAVITKEL 564


>gi|85057943|ref|YP_456859.1| threonyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|123738887|sp|Q2NIG3|SYT_AYWBP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84790048|gb|ABC65780.1| threonyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 641

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 154/445 (34%), Gaps = 37/445 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD +  + +L L      +   G+  WLP G      V   I +++    
Sbjct: 229 YLQLLEERKERDHKKINKELDLFM-FNKEVGLGLPFWLPKGATVRRIVERYIVDKELSYD 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKS 124
              +  P + + +L+  SG  D Y   M  +    +   ++  P +      I++ +  S
Sbjct: 288 YHHVYTPIMANTELYRISGHLDHYASNMFPIMSLENGEKLVLRPMNCPHHMMIYKKNPHS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y+ LP    ++ +  R E      G+ R RE  + DA+ F   P+  K    K+    L 
Sbjct: 348 YKELPLRIAELGMMHRFEKSGAVSGLQRVREMTLNDAHIF-ARPDQIKEEIKKIINLILE 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++    +K+  +R                       + F           +      ++ 
Sbjct: 407 VYCDFNIKNYELRLS-------------YRNPNNTEKYFNDDQMWYNAEKTLKETIKELG 453

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y    DV   ++F++L   + +S   ++    F    K+      TF 
Sbjct: 454 LPFKEAIGEAAFYGPKLDV---QVFNALGNEETLSTVQLD----FLLPQKFD----LTFI 502

Query: 304 GADGKDHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G D K H   +    +     R +A ++E +     +               +       
Sbjct: 503 GEDNKHHRPVVIHRAVVSTMERFLAHLVEETKGVFPLWLAPVQVLLIPVSAPL------H 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  +KI   L      V  +     +G +   A  L  P QV++G   + ++ +  +  
Sbjct: 557 FEFSQKIKETLQLQNFRVEINSKDNTLGYKIREAQKLKIPYQVVIGDHEMINNLITFRKY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            + ++  + ++E ++    +    +
Sbjct: 617 GSHLQTTIKVDEFVSLLKDKVLQKK 641


>gi|257440090|ref|ZP_05615845.1| threonine--tRNA ligase [Faecalibacterium prausnitzii A2-165]
 gi|257197442|gb|EEU95726.1| threonine--tRNA ligase [Faecalibacterium prausnitzii A2-165]
          Length = 611

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 72/438 (16%), Positives = 147/438 (33%), Gaps = 38/438 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD      ++ L   M      +G+  +LP G      +   I+E++   G + + 
Sbjct: 204 EARERDHRKIGKEMGLF--MTDDLVGRGLPMFLPAGYTVWQELENYIKEKERARGYLHVM 261

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + + +L+  SG +D Y + M    +   ++ +  P +      I+ +   SYR+LP 
Sbjct: 262 TPCIGTVNLYKTSGHWDHYRENMFPAMEMEGESYVLRPMNCPHHMMIYANRPHSYRDLPM 321

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +I   FR E      G+ R R F   DA+ F    +      +   + +        
Sbjct: 322 RIGEIAHDFRYESSGTLKGIERGRHFCQNDAHLFCTPEQIKSEVADVCNLIFETYKDFKI 381

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                + +   P      H+                   +    +      ++    +  
Sbjct: 382 TDYRCVLSLRDPADKKKYHD--------------DDAMWNHAENALREVLTELGIHFTEE 427

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    DV    +  ++     +S   ++    F    K+      T+   DG +
Sbjct: 428 IGEAAFYGPKLDV---NVKPAVGAEYTLSTCQLD----FCLPAKF----HLTYVDKDGSE 476

Query: 310 HYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
               +     +G++    A +     GK   W   V    + +       +   +  E I
Sbjct: 477 KTPVVLHRAILGSLDRFMAYLIEETKGKFPTWLAPVQVKVLPV------SEKTLEYAESI 530

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLL-GFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             +L + G  V  DD  ++IG +   A  +   P  +++G+K      + ++ R  G   
Sbjct: 531 TEKLVEAGVRVALDDDNQKIGYKIRAAQQVDRVPYMLVLGAKEAEAGNLSVRDRK-GETT 589

Query: 428 DMSLEEVINYASHRFSNN 445
            M ++E I   +      
Sbjct: 590 TMEVDEFIAKVTEEIKTR 607


>gi|242309901|ref|ZP_04809056.1| prolyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
 gi|239523198|gb|EEQ63064.1| prolyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
          Length = 578

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 106/260 (40%), Positives = 158/260 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S +F+P L+E P+D  + SH+ +LR G I Q   GIY++LPLG++ LD ++ I+++E
Sbjct: 1   MRFSNFFIPTLKETPKDVVLKSHEYLLRGGFIQQIGSGIYNFLPLGKRVLDKISKIVKQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +  +  A LW  SGRY+ YGKE+LR  DR +   ++GPTHEE +T++ ++
Sbjct: 61  MDNAGANEVLLGCVTPASLWQASGRYERYGKELLRFKDRKENEFVFGPTHEETITELVKT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF  + E  K  +++M  +
Sbjct: 121 YVKSYKQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHSSYEDLKREFDEMERT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF +LGL    + A+SG IGG  S EF+VLA++GE  +    +             +
Sbjct: 181 YSVIFSKLGLDFRAVEADSGAIGGSGSKEFMVLAESGEDTICVCDNCSYAANLEAANRLE 240

Query: 241 DIISLNSIVEQWTAPYAATS 260
                      +T  +    
Sbjct: 241 KSTQTPPPQANFTKFHTPDV 260



 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 1/181 (0%)

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +V    +     +      +GIEVGHIF  G KYS  M ATF   +GK     MG YGIG
Sbjct: 393 EVQEGDICKKCQKGHLYFTKGIEVGHIFQLGEKYSQAMGATFLDENGKSKPFIMGCYGIG 452

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R++AA+IE  +D KG+ W  + APF + ++     D    +   +IY  LS+   +  
Sbjct: 453 ISRLLAAIIEQHYDEKGMKWTKATAPFLLDIVISNVKDCEQVELATRIYHALSEQKIECL 512

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  E+ G++ A  +L+G P  +IVG K + + KVE+  R    +    + +   +   
Sbjct: 513 LDDRNERYGAKMADFELIGMPYALIVG-KGIQEGKVELVCRANLEKTMFEVNDFEGFLES 571

Query: 441 R 441
            
Sbjct: 572 L 572


>gi|32490830|ref|NP_871084.1| hypothetical protein WGLp081 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31340448|sp|Q8D3C0|SYT_WIGBR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|25166036|dbj|BAC24227.1| thrS [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 636

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 147/444 (33%), Gaps = 39/444 (8%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K F+  ++E   RD      KL L    I+++S G+  W   G      +   IR++  +
Sbjct: 229 KNFIKNIKELEHRDHRKIGKKLDLF--HIYENSPGMVFWHHNGWIIFRILEKFIRKKLKK 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               E+  P +   DLW  SG  D+Y   M    +  +K     P +      IF+  I+
Sbjct: 287 FYYQEVKTPCIIDHDLWRLSGHLDNYKNYMFH-TNSENKQYCIKPMNCPAHVLIFKKKIR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY+ LPF   +     R+E      G+MR R F   DA+ F +  +      +       
Sbjct: 346 SYKELPFRISEFGSCHRNEPSGSLHGLMRIRNFTQDDAHIFCMHDQILSE-VSSCIKMIY 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++   G K I ++  + P     S E                   DF            
Sbjct: 405 EVYSCFGFKKILVKLSTRPENRIGSDE-----------------IWDFAEKQLELSLKKN 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             L  I     A Y    +     L DSL    +     +++               A +
Sbjct: 448 KILFKIDLNEGAFYGPKIEF---TLLDSLNRKWQCGTIQLDLCLANKLQ--------AYY 496

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                +     +    I         I    +     +P  ++P ++ +IN+        
Sbjct: 497 INNKNEKTNPVIIHRAILGSMER--FIGIITEEFSGKYPLWISPIQVGVINVSVD---QI 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +KI     +    +  D   E+I  +     L   P  +I G K +  + + ++++ 
Sbjct: 552 DYVKKITKFFLQKKIRIISDLRNEKISFKIREYTLRFIPYIIICGKKEMESNSISVRNKY 611

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
               +  SLE+  N         +
Sbjct: 612 GKQLKYSSLEKFYNVIYEEIKQKK 635


>gi|315607978|ref|ZP_07882971.1| threonine--tRNA ligase [Prevotella buccae ATCC 33574]
 gi|315250447|gb|EFU30443.1| threonine--tRNA ligase [Prevotella buccae ATCC 33574]
          Length = 650

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 153/445 (34%), Gaps = 38/445 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L      +  KG+  WLP G +    +  ++R      
Sbjct: 232 EYLVMLEEAKKRDHRKIGKEMELFM-FSERVGKGLPIWLPKGTELRLRLQELLRSMLRPY 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P +    L+V SG Y  YGK+  +       D+  +  P +     ++F    
Sbjct: 291 NYQEVITPGIGGKSLYVTSGHYAHYGKDAFQPIHTPEEDEEYMLKPMNCPHHCEVFARKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    FR E      G+ R R F   DA+ F   P+  K  +       
Sbjct: 351 RSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIFVR-PDQVKAEFETNIDII 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L++F+  G  +   +                  D  + + +   D +     +   +   
Sbjct: 410 LKVFNIFGFDNYEAQISLR--------------DPNDKEKYIGSDEVWEESETAIKEACA 455

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++      F          
Sbjct: 456 EKGLKARVELGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLPNRF--------KL 504

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D        +     G++    AV+     G   +W           + I    +
Sbjct: 505 EYTAEDNSKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW------LTPDQVAILPISE 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  + +      VG     D+  E+IG +    +L   P  VIVG K  ++  V ++
Sbjct: 559 KYNDYAKSVARYFDSVGVRAIIDERNEKIGRKIRDNELKRVPYMVIVGEKESAEGLVSMR 618

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            +  G +  M++EE     +   ++
Sbjct: 619 KQGGGEQATMTMEEFAQRINSEVAD 643


>gi|42527722|ref|NP_972820.1| prolyl-tRNA synthetase [Treponema denticola ATCC 35405]
 gi|81831353|sp|Q73KJ8|SYP_TREDE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|41818550|gb|AAS12739.1| prolyl-tRNA synthetase [Treponema denticola ATCC 35405]
          Length = 595

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 101/271 (37%), Positives = 155/271 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++ ++P L+E P +A + SHKL+LR GMI   + G++++LPLG KA   V  IIREE
Sbjct: 1   MKMTQMYMPTLREIPNEAVVESHKLLLRAGMIRNLANGLFAYLPLGLKAFRKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G +E   P +   ++W ESGR+DS G E+LR+ +R ++ ++  PT EE  T + ++
Sbjct: 61  MDAIGCLEFKPPVIVPGEIWQESGRWDSMGPELLRIKNRLNQELVVSPTAEEAFTALLKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+N P   YQI  K+RDE+RPR+G+MR+REF MKDAYSF    +    +Y     +
Sbjct: 121 ELSSYKNYPLLTYQINTKYRDEIRPRYGLMRTREFTMKDAYSFHTNDKSLDEAYLSFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R GL  I ++A+SG +GG  S EF+V +  G+  +             +     
Sbjct: 181 YIKIFKRCGLTVIGVKADSGAMGGSGSQEFMVESSVGDDTLLLCPSCGYAANEEKAACAP 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           D    N  + Q +A      D  N K  + L
Sbjct: 241 DKEQGNGNMPQGSALSIEEIDTPNVKTIEDL 271



 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 98/181 (54%), Gaps = 7/181 (3%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             ++      + +G E+GHIF  G KY+  M+ T+   +GK  +  MG YGIG  R+ A+
Sbjct: 416 KCAVCGTALYTKKGNELGHIFKLGYKYTKAMNMTYLDENGKQQHPSMGCYGIGLDRLTAS 475

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++E  HD  GIIWP S+APF+++++ IK   ++ ++  +++Y    K G +   DD  E+
Sbjct: 476 IVEEHHDEDGIIWPMSIAPFQVAIVPIKYEGEMQKE-ADRLYEECKKRGIEALLDDRKER 534

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN----YASHRFS 443
            G +F   DL+G P++++VG K + +  +E K R       +  ++V++          +
Sbjct: 535 TGVKFKDMDLIGIPIRLVVGEKNLPN--IEFKLRKAVESSLVDKDKVVDLVEKTVKEELA 592

Query: 444 N 444
            
Sbjct: 593 K 593


>gi|31794022|ref|NP_856515.1| prolyl-tRNA synthetase [Mycobacterium bovis AF2122/97]
 gi|121638725|ref|YP_978949.1| prolyl-tRNA synthetase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224991217|ref|YP_002645906.1| prolyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|81834897|sp|Q7TXQ5|SYP_MYCBO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152112932|sp|A1KMI8|SYP_MYCBP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|31619616|emb|CAD95055.1| PUTATIVE PROLYL-TRNA SYNTHETASE PROS (PROLINE--TRNA LIGASE) (PRORS)
           (GLOBAL RNA SYNTHESIS FACTOR) (PROLINE TRANSLASE)
           [Mycobacterium bovis AF2122/97]
 gi|121494373|emb|CAL72854.1| Putative prolyl-tRNA synthetase proS [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224774332|dbj|BAH27138.1| prolyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 582

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 101/259 (38%), Positives = 148/259 (57%), Gaps = 1/259 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ASHKL++R G I   + G+YSWLPLG + L N+  +IR+E 
Sbjct: 4   RMSELFLRTLRDDPADAEVASHKLLIRAGYIRPVAPGLYSWLPLGLRVLRNIERVIRDEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTQYGDSVFRLKDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y     +Y
Sbjct: 124 YSSYKDFPLTLYQIQTKYRDEARPRAGILRAREFVMKDSYSFDIDAAGLKAAYRAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFD 240
            RIF RL ++ + + A SG +GG  S EF+  + +GE   V C +      + +  T   
Sbjct: 184 QRIFDRLQVRYVIVSAVSGAMGGSASEEFLAESPSGEDAFVRCLESGYTANVEAVVTARP 243

Query: 241 DIISLNSIVEQWTAPYAAT 259
           D + ++ + E        T
Sbjct: 244 DTLPIDGLPEAVVHDTGDT 262



 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 93/174 (53%), Gaps = 4/174 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     V ARGIE+GHIF  G+KY+   +A   G DGK   + MG
Sbjct: 395 GTIEAAEVREGDPSPDGAGPLVMARGIEIGHIFQLGSKYTDAFTADVLGEDGKPVRLTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA V E  HD  G+ WP +VAPF + L  I   D   R     + A L ++
Sbjct: 455 SYGIGVSRLVAVVAEQHHDELGLRWPSTVAPFDVHL-VIANKDAQARAGATALAADLDRL 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           G +V  DD     G +F  A+LLG P  V+VG +  +D  VE++ R +G   ++
Sbjct: 514 GVEVLLDDRQASPGVKFKDAELLGMPWIVVVG-RGWADGVVELRDRFSGQTREL 566


>gi|113955222|ref|YP_731224.1| prolyl-tRNA synthetase [Synechococcus sp. CC9311]
 gi|123031649|sp|Q0I8J8|SYP_SYNS3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|113882573|gb|ABI47531.1| prolyl-tRNA synthetase [Synechococcus sp. CC9311]
          Length = 598

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 112/240 (46%), Positives = 151/240 (62%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEIAS +L++R G I +   GIY++LPL  + L  V  I+REE
Sbjct: 1   MRVSRLMLVTLRDVPADAEIASQQLLIRGGFIRRVGSGIYAYLPLMWRVLQRVMRIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N+ GA+E  +P LQ A+LW +SGR+  Y      M  L DR ++++  GPTHEEV+T++
Sbjct: 61  MNQIGALETLLPQLQPAELWEKSGRWQGYTAGEGIMFHLEDRQERSLGLGPTHEEVITEL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF          Y +M
Sbjct: 121 ASDLLRSYRQLPVTLYQIQSKFRDEIRPRFGLMRGREFIMKDAYSFHGDEGDLARMYEEM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y R+F R GL ++ + A+SG IGG  S EF+V AD GE  +  S D  D+    E  
Sbjct: 181 EKAYTRVFQRCGLTAVGVDADSGAIGGAASQEFMVTADAGEDLILISPDG-DYAANQEKA 239



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/188 (38%), Positives = 97/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              D+ N K  D     PE      RGIEVGHIF  G KYSL M A     +GK  ++ M
Sbjct: 404 PAMDLRNAKAGDHCVHRPEQSLEERRGIEVGHIFQLGRKYSLSMGAQITTKEGKQEHLWM 463

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R+  A +E  HD  GIIWP S+APF++ ++     D+V     E+IY  L  
Sbjct: 464 GCYGIGISRLAQAAVEQHHDDAGIIWPLSIAPFQVIVVVANVQDEVQMALGEEIYNELLA 523

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD GE+ G +F  ADL+G P +V+VG +  ++  VE+  R       +S  E 
Sbjct: 524 SGIDVLLDDRGERAGVKFKDADLIGIPWRVVVG-RAAAEGNVELVKRSERDANVLSRAEA 582

Query: 435 INYASHRF 442
           I+      
Sbjct: 583 ISSLLEAI 590


>gi|296110429|ref|YP_003620810.1| prolyl-tRNA synthetase [Leuconostoc kimchii IMSNU 11154]
 gi|295831960|gb|ADG39841.1| prolyl-tRNA synthetase [Leuconostoc kimchii IMSNU 11154]
          Length = 571

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 103/235 (43%), Positives = 147/235 (62%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+L+L+ G I   + G++S+LPL ++ L+ +  IIREE
Sbjct: 1   MKQSKLLMPTLREVPADAEVKSHQLLLKAGFIRPVAAGMFSYLPLAKRVLNKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A EM VP +  A+LW +SGRY +YG ++ +  +R D+  I GPTHEE  T +   
Sbjct: 61  MANIDANEMLVPEVLPAELWQKSGRYATYGPDLYKFKNRQDRDFILGPTHEETYTQLMAD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R+REF+MKDAYSF    EG   +++ M  +
Sbjct: 121 EIKSYKKLPLTVYQIQPKFRDENRPRFGLLRTREFIMKDAYSFSADQEGLDQTFHAMENA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y+ IF R+G+    +  ++G +GG  S EF   A  GE  +  S    D+    E
Sbjct: 181 YINIFDRIGISYRAIVGDAGAMGGSDSKEFSAPAAAGEDTIAYSDST-DYAANLE 234



 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 1/175 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            +   +  +GIE+GHIF  GT+YS  M A     +G+   + MGSYGIG  R+++A+ E 
Sbjct: 398 GKGHLIFTKGIEIGHIFKLGTRYSKAMGAQVLDENGRQTDMIMGSYGIGVSRLLSAIAEQ 457

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++WP S+APF + ++ +   D        ++   L   G +V  DD  E+ G +
Sbjct: 458 KADDLGLVWPASIAPFDVHIVPVNMKDDEQSRVANQLETLLMAQGLEVLVDDRKERAGVK 517

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           FA ADL+G P+++ VG K   +  VE+K R +    +M + EV++  S   + ++
Sbjct: 518 FADADLIGLPIRITVGKK-AGEDIVEVKVRASNTNIEMRMSEVVDSVSVLLNGDK 571


>gi|325475063|gb|EGC78249.1| prolyl-tRNA synthetase [Treponema denticola F0402]
          Length = 595

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 101/271 (37%), Positives = 155/271 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ ++ ++P L+E P +A + SHKL+LR GMI   + G++++LPLG KA   V  IIREE
Sbjct: 1   MKMTQMYMPTLREIPNEAVVESHKLLLRAGMIRNLANGLFAYLPLGLKAFRKVEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G +E   P +   ++W ESGR+DS G E+LR+ +R ++ ++  PT EE  T + ++
Sbjct: 61  MDAIGCLEFKPPVIVPGEIWQESGRWDSMGPELLRIKNRLNQELVVSPTAEEAFTALLKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+N P   YQI  K+RDE+RPR+G+MR+REF MKDAYSF    +    +Y     +
Sbjct: 121 ELSSYKNYPLLTYQINTKYRDEIRPRYGLMRTREFTMKDAYSFHTNDKSLDEAYLSFEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF R GL  I ++A+SG +GG  S EF+V +  G+  +             +     
Sbjct: 181 YIKIFKRCGLTVIGVKADSGAMGGSGSQEFMVESSVGDDTLLLCPSCGYAANEEKAACAP 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           D    N  + Q +A      D  N K  + L
Sbjct: 241 DKEQGNGNMPQGSALSIEEIDTPNVKTIEDL 271



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 97/181 (53%), Gaps = 7/181 (3%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             ++      + +G E+GHIF  G KY+  M+ T+   +GK  +  MG YGIG  R+ A+
Sbjct: 416 KCAVCGTALYTKKGNELGHIFKLGYKYTKAMNMTYLDENGKQQHPSMGCYGIGLDRLTAS 475

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++E  HD  GIIWP S+APF+++++ IK   ++ ++  +++Y    K G +   DD  E+
Sbjct: 476 IVEEHHDEDGIIWPMSIAPFQVAIVPIKYEGEMQKE-ADRLYEECKKRGIEALLDDRKER 534

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN----YASHRFS 443
            G +F   DL+G P++++VG K + +  +E K R       +   +V++          +
Sbjct: 535 TGVKFKDMDLIGIPIRLVVGEKNLPN--IEFKLRKAVESSLVDKNKVVDLVEKTVKEELA 592

Query: 444 N 444
            
Sbjct: 593 K 593


>gi|305432763|ref|ZP_07401922.1| threonine--tRNA ligase [Campylobacter coli JV20]
 gi|304444160|gb|EFM36814.1| threonine--tRNA ligase [Campylobacter coli JV20]
          Length = 610

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 71/437 (16%), Positives = 147/437 (33%), Gaps = 40/437 (9%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L T    +   G+  WL  G +    +  ++ +     G   +
Sbjct: 209 IEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPV 267

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P L  AD W  SG Y +Y + M      +++     P +      I++S ++SYR+LP
Sbjct: 268 RGPELLKADAWKISGHYANYKENM-YFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLP 326

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F++  +  R E      G+ R REF   DA+ F + P   K    ++      +    
Sbjct: 327 LKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFVDNLMKLF 385

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                                      T   +     +  D    +     D+      I
Sbjct: 386 DFSYEMEI------------------STKPAKAIGDDEIWDTATKALKEALDEQGLKYGI 427

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    D+   K+ D+L    +     ++    F    ++       +  ++ +
Sbjct: 428 DEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPERF----KLEYTDSNNE 476

Query: 309 DHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 +    +G+      ++            +       + + I           ++
Sbjct: 477 KKQPVMLHRAILGSFERFIGILTEHC------AGEFPFFIAPTAVGIVPISDSHIAYAKE 530

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I   L ++  D    +  E +  +   A+    P+ +++G + V+   V ++ R    ++
Sbjct: 531 IQRALLELNIDSEVYEKNESLSKKIRTAEKQKLPMILVLGDEEVAKRSVALRDRRAKEQK 590

Query: 428 DMSLEEVINYASHRFSN 444
           ++SL+E I     + S 
Sbjct: 591 NLSLDEFIKLVKEKMSE 607


>gi|310287485|ref|YP_003938743.1| threonyl-tRNA synthetase [Bifidobacterium bifidum S17]
 gi|309251421|gb|ADO53169.1| threonyl-tRNA synthetase [Bifidobacterium bifidum S17]
          Length = 676

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 60/461 (13%), Positives = 129/461 (27%), Gaps = 54/461 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPEEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEYDADGNITKPGADYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 420

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 421 DEL-TSLLTFVLNLLKDFGLSDFYLELST----------------KDPDKYVGSDEIWEE 463

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +     +             A Y       + +  D++    +VS   ++    F  
Sbjct: 464 ATRTLREVAEASHLDLVADPGGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 516

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++       +   DG           +   R +   IE         +  +   +   
Sbjct: 517 PERF----QLEYIAKDGT------HQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAP 566

Query: 351 LINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  +     V  +    +      L         D   ++ G +   A     P  +IVG
Sbjct: 567 VQVLGV--PVADEFAPHLAGFVKSLEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVG 624

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            + ++++ V  + R       + ++E              V
Sbjct: 625 EEDMNNNAVSFRFRDGSQLNGVPVDEAREKILAVIKKRAQV 665


>gi|32267225|ref|NP_861257.1| prolyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
 gi|81835913|sp|Q7VFF0|SYP_HELHP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|32263278|gb|AAP78323.1| prolyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
          Length = 588

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 116/269 (43%), Positives = 160/269 (59%), Gaps = 1/269 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+  L+E+P+DA + SH+ ++R G I Q   GIY++LPLG+K LD V  I++EE
Sbjct: 1   MRFSQLFVNTLKESPKDAVLKSHQYLIRGGFIQQIGSGIYNFLPLGKKLLDKVRFIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +++GA E+ +  +  A+LW ESGRY+ YG+E+LR  DR +   + GPTHEEV+T I ++
Sbjct: 61  MDKSGAQEILMGFVTPAELWRESGRYEQYGRELLRFVDRKENEFVLGPTHEEVITHIAKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDELRPRFG+MR REF+MKD YSF          ++ M  +
Sbjct: 121 TIKSYKQLPLHLYQIHSKFRDELRPRFGLMRGREFIMKDGYSFHSNYADLNREFDVMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDF 239
           Y RI  R+GL+   + A+SG IGG  S EF+VLA  GE  +  C        I +     
Sbjct: 181 YKRILQRMGLEFKVVEADSGAIGGSGSKEFMVLAPCGEDTIVVCKGCEYGANIEASKRAP 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                 N I     AP AA +      + 
Sbjct: 241 RTAPRPNEIKYDSNAPQAAFARFFTPDIK 269



 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 96/189 (50%), Gaps = 10/189 (5%)

Query: 260 SDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P+   +    +GIEVGHIF  G KYS  M+A F   DGK   + MG Y
Sbjct: 401 ADIAQSKEGDLCPKCAQELYYTKGIEVGHIFKLGDKYSRAMNAQFLDNDGKTQPLIMGCY 460

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G G  R++ A++E   D  G IW   V+ F I++I     D V  D    +Y  LS  G 
Sbjct: 461 GFGISRILPAILEQKSDDLGCIWSKEVSVFDIAIIISNTKDSVQNDFGSALYEILSACGI 520

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR-------EDMS 430
           DV  D+  E+ G +    +LLGF   +IVG K +++ KVE+  R    +       +++ 
Sbjct: 521 DVLLDERDERFGVKMKDFELLGFHSALIVG-KGLNEGKVELIKREGLKKYELCATDKEIL 579

Query: 431 LEEVINYAS 439
           LEE++   +
Sbjct: 580 LEEILKIIA 588


>gi|15921207|ref|NP_376876.1| threonyl-tRNA synthetase [Sulfolobus tokodaii str. 7]
 gi|22654128|sp|Q973C8|SYT_SULTO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15621992|dbj|BAB65985.1| 540aa long hypothetical threonyl-tRNA synthetase [Sulfolobus
           tokodaii str. 7]
          Length = 540

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 157/442 (35%), Gaps = 38/442 (8%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E    D  I   +L L +    + + G+  +   GQ     +   + E     G
Sbjct: 123 YLKWLEEVSEYDHRIIGERLDLFS-FPDETAPGLALFHYKGQIIRKELMKFMEEINESMG 181

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+    +  + LW  SG YD Y  +M+      D+ +   P +      I++S  +SY
Sbjct: 182 YQEVFTAEIYRSILWKTSGHYDYYKDKMVLFK-MEDEELGLKPMNCPAHILIYKSKTRSY 240

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP  F +  L FR E R   +G++R R F+  D + F    +        +  +    
Sbjct: 241 KDLPIRFSEFGLVFRWEKRGELYGLLRVRGFVQDDGHIFLTEDQIKDEVKMLVKKTI--- 297

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                        +   I G    +  +   T   +   S +  +    +  +  +++  
Sbjct: 298 -------------DVLSIFGFKGDDVRINLSTRPDESIGSDELWEKATNALVSALNELGI 344

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E+  A Y    D     + DSL    ++S   ++    F    ++       +  
Sbjct: 345 KYIVKEKEGAFYGPKIDFD---IRDSLGRWWQLSTIQVD----FNLPERF----KLEYID 393

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +     G++    A++     GK   W   ++P ++ ++ I        D
Sbjct: 394 KDGSRKRPVMIHRAIYGSIERFMAILLEHFRGKLPTW---LSPVQVRILPISKD---VED 447

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               + ++L +    V  D   E +  +   A   G P  +IVG K   + KV ++ R  
Sbjct: 448 YALNLLSKLKENKIRVELDMSDETLSKRIKKAYDEGVPYMIIVGKKEREEGKVTVRGRNN 507

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                +  ++ +        N 
Sbjct: 508 VEIRGVKFDDFLKALLEEIRNR 529


>gi|332637693|ref|ZP_08416556.1| prolyl-tRNA synthetase [Weissella cibaria KACC 11862]
          Length = 573

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 121/265 (45%), Positives = 166/265 (62%), Gaps = 5/265 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE+ SH++MLR G +   S G+Y++LPL Q+ L+ +NAIIREE
Sbjct: 1   MKQSKVFIPTLRETPADAEVISHQMMLRAGYMRPVSAGVYAYLPLAQRVLNKINAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  AIEMS P L  A++W ESGRY++YG  + +L +R+D+ MI GPTHEE MT + R 
Sbjct: 61  MEKIDAIEMSAPMLLPAEMWQESGRYETYGPNLFKLKNRHDRDMILGPTHEETMTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFGV+R REF+MKDAYSF +  +G   SY  M  +
Sbjct: 121 DIKSYKRLPLTVYQIQTKFRDENRPRFGVLRGREFIMKDAYSFSVDQDGLDESYKNMESA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF- 239
           Y+ IF R+GL    +  ++G +GG  S EF   A+ GE  +  S    D+    E     
Sbjct: 181 YINIFDRIGLDYRVIVGDAGAMGGSDSKEFSAPAEAGEDIIAYSD-ESDYAANLEMAKDL 239

Query: 240 ---DDIISLNSIVEQWTAPYAATSD 261
              +   +  + +E+   P   T D
Sbjct: 240 YTPNKSHAQMADLEKIATPEVKTID 264



 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 60/172 (34%), Positives = 96/172 (55%), Gaps = 1/172 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            +      +GIE+GHIF  GT+YS  M A    A+G+   V MGSYGIG  R++AA+ E 
Sbjct: 396 GKGHLKFTKGIEIGHIFKLGTRYSKSMGAQVLDANGRQADVIMGSYGIGVSRLLAAIAEQ 455

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           + D  G+ WP SVAP+ + L+ +K  D+  R   +++  +L + G +V  DD  E+ G +
Sbjct: 456 NADENGLAWPTSVAPWDVHLVPMKYSDETQRALTDELNDKLVEAGYEVLVDDRNERAGVK 515

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F  +DL+G P++V +G K   +  VE+K R      ++  EE+++       
Sbjct: 516 FNDSDLIGLPVRVTIGKK-AGEGIVEVKLRKADEAIEVRTEELVSTLQILLQ 566


>gi|254411303|ref|ZP_05025080.1| threonyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196181804|gb|EDX76791.1| threonyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 609

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 62/449 (13%), Positives = 146/449 (32%), Gaps = 38/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y     +   RD       L L   +      G+  W P G      +   +++EQ 
Sbjct: 190 LTEYKRRKQEALKRDHRKLGKDLGLFI-LSDPVGPGLPLWTPKGTILRSTLEDFLKQEQI 248

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSH 121
           + G   +  P +   +L+  SG +  Y +++  +   ++    +    +      I++  
Sbjct: 249 KRGYQPVVTPHIGRVELFKTSGHWQKYKEDLFPMMGESEAEGFVLKAMNCPFHVQIYKHE 308

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR+LP    +    +R E     G +       +D     +TPE     + ++    
Sbjct: 309 LRSYRDLPMRLAEFGTVYRYEQSGELGGLTRVRGFTQDDAHLFVTPEQLDDEFLRVVDLT 368

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L +F+ LGL+    R                  D  + +   S +  +    +     + 
Sbjct: 369 LSVFNTLGLQDFKARLS--------------FRDPSQDKYIGSDEAWNKSENAIRRAVET 414

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +   +       A Y    D       D+L    ++    ++               +  
Sbjct: 415 LGMGHFEGIGEAAFYGPKLDFM---FHDALDREWQLGTVQVDYNLP--------ERFNLE 463

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DG       +     G++  +  ++   + G    W             +      
Sbjct: 464 YVAEDGTRQRPVMIHRAPFGSLERLIGILIEEYAGDFPFW------LAPVQARLLPVSDE 517

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +++  ++  VG  V  D  G+++       +    P+  +VG+K V  + + ++ 
Sbjct: 518 QLTFAKEVAQKMRLVGVRVEVDTSGDRLPKMIRNGEKAKIPVMAVVGAKEVESNSLSVRI 577

Query: 421 RLTGIR----EDMSLEEVINYASHRFSNN 445
           R  G +      + + +V+       +N 
Sbjct: 578 REAGKQSQDLGAIPVAQVLERMESAIANR 606


>gi|296139421|ref|YP_003646664.1| prolyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
 gi|296027555|gb|ADG78325.1| prolyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
          Length = 585

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 97/245 (39%), Positives = 143/245 (58%), Gaps = 1/245 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G + + + G+YSWLPLG + L NV  ++REE 
Sbjct: 4   RFSQLFLRTLRDDPADAEVPSHKLLVRAGYVRRIAPGVYSWLPLGLRVLRNVEHVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+ +P L   + +  + R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 64  NAIGGQEILLPALLPREPYETTNRWTEYGDSLFRLQDRKGADMMLGPTHEEIFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD + EG   +Y K   +Y
Sbjct: 124 YNSYKDLPVILYQIQNKYRDEERPRAGILRGREFVMKDSYSFDTSDEGLSEAYAKHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RL ++ + + A SG +GG  S EF+ ++  GE   +      D+    E      
Sbjct: 184 QRIFARLAIEHVIVSATSGAMGGSASEEFLAVSPVGE-DTYVHSTESDYAANVEAVVTPA 242

Query: 242 IISLN 246
             ++ 
Sbjct: 243 PPAIP 247



 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/176 (36%), Positives = 92/176 (52%), Gaps = 4/176 (2%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D+ P+ +   VSARGIE+GHIF  G KY+        G +GK   +  G
Sbjct: 400 GTIEAAEVRDGDASPDGRGTLVSARGIEIGHIFQLGRKYTDAFEVDVLGENGKPVRLTQG 459

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA + E  HD KG+ WP  VAPF +  + I   D+      E + A L   
Sbjct: 460 SYGIGVSRLVAVIAEQQHDDKGLRWPKGVAPFDVH-VVIANKDEGAWTGAESLAAELDAA 518

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           G  V  DD     G +F  ++LLG P  V+VG +  +D  VE++ RLTG   ++ +
Sbjct: 519 GLQVLLDDRKASPGIKFKDSELLGVPTVVVVG-RGWADGVVELRDRLTGESREIPV 573


>gi|118617676|ref|YP_906008.1| prolyl-tRNA synthetase [Mycobacterium ulcerans Agy99]
 gi|152112934|sp|A0PQB8|SYP_MYCUA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118569786|gb|ABL04537.1| prolyl-tRNA synthetase ProS [Mycobacterium ulcerans Agy99]
          Length = 582

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 99/259 (38%), Positives = 146/259 (56%), Gaps = 1/259 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I     G+YSWLPLG + L N+  +IREE 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYIRPVGPGLYSWLPLGLRVLRNIERVIREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTEYGDGVFRLEDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ+K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YNSYKDFPLTLYQIQIKYRDEARPRAGILRAREFVMKDSYSFDIDSGGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFD 240
            RIF RL ++ + + A SG +GG  S EF+  +  GE   V C +      + +  T   
Sbjct: 184 QRIFDRLRVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRCVESGYAANVEAVVTARP 243

Query: 241 DIISLNSIVEQWTAPYAAT 259
           + + ++   +        T
Sbjct: 244 ESLPIDGQPDAVVHDTGET 262



 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 95/189 (50%), Gaps = 5/189 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+   + V ARGIE+GHIF  G KY+   +A   G DGK   + MG
Sbjct: 395 GTIEAAEVREGDPAPDGAGQLVMARGIEIGHIFQLGRKYTDAFTADVLGEDGKPVRLTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA + E  HD  G+ WP  +APF + L  I   D   R     +   L  +
Sbjct: 455 SYGIGVSRLVAVIAEQHHDNLGLRWPAEIAPFGVHL-VIANKDAEARAGAIGLAGELDGL 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL-EEV 434
           G +V  DD     G +F  A+LLG P  V+VG +  +D  VE++ R  G   ++++ + +
Sbjct: 514 GVEVLLDDRQASPGVKFKDAELLGMPWVVVVG-RGWADGVVELRDRFGGQTRELTVGDSL 572

Query: 435 INYASHRFS 443
               +   S
Sbjct: 573 ATDIAAAIS 581


>gi|329769169|ref|ZP_08260589.1| prolyl-tRNA synthetase [Gemella sanguinis M325]
 gi|328839388|gb|EGF88966.1| prolyl-tRNA synthetase [Gemella sanguinis M325]
          Length = 566

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 125/411 (30%), Positives = 187/411 (45%), Gaps = 35/411 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P  +E P  AE  SHKL+++ GM+ Q S G+Y++LPL  K + N+  +IR+E
Sbjct: 1   MRQSRTFIPTTREVPSSAEAISHKLLIKAGMVKQVSAGVYTYLPLATKVIQNIEKVIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA E+ +P LQS D W +SGR+   G E++R+ DR +      PT EEV+     +
Sbjct: 61  HAKIGASELLMPILQSEDYWKQSGRWYKMGDELIRVTDRKNAGYALSPTAEEVICQTVSN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPR G++R +EF+MKD YSF  +PE  + +YN  + +
Sbjct: 121 MVTSYKQLPVNLYQIQTKFRDEIRPRLGLLRGKEFIMKDGYSFHDSPESLRETYNDYYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----- 235
           Y  IF R  LK   ++A+SG IGG  +HEF  LA+ GE  +  ++   D+    E     
Sbjct: 181 YSNIFDRFELKYRAVKADSGNIGGSYTHEFQALAEVGEDTIVYTE-ESDYAANIETAAVV 239

Query: 236 --------NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-----PENKRVSARGI 282
                   + +  +   L +  +Q     AA   V   +   +L      E   V  RG 
Sbjct: 240 EQNYTMPTDYEKKERSLLETPNQQTIDDIAAYCGVEVNRAMKALALKADGEFYLVLMRGN 299

Query: 283 EV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           +      F   T  S    AT +  +             G       VI  +        
Sbjct: 300 DQLNDIKFMKATGTSEVEMATEQEIEEVMGSAVGYMGPFGI--KNCKVIGDNAIKYMYNH 357

Query: 341 PDSVAPFKISLINIKAHDQVCRDACE-------KIYARLS-----KVGCDV 379
                      IN+   D       +        +   LS       G +V
Sbjct: 358 SCGANKKGFHYINVNPGDYEVDAYYDLRMIEEGDLAEDLSGPVKFAKGIEV 408



 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 99/165 (60%), Gaps = 1/165 (0%)

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                A+GIEVG +F  G  YS  M  T+  A+G+ ++  MG YGIG  RV++A+IE  +
Sbjct: 398 GPVKFAKGIEVGQVFELGKGYSESMDITYLDANGRANHFYMGCYGIGVSRVISAIIEQHN 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  GIIWP  V P+++ L+ +    +      E++Y +L++ G +V +DD  E+ G +F 
Sbjct: 458 DENGIIWPKEVTPYQVHLVCVDIKKEEQVKQSEELYKQLTEAGYEVLYDDRAERAGVKFN 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            ADL+G PLQV+VG K V D  VE+K R T  + D  +E+V++  
Sbjct: 518 DADLIGIPLQVVVGKK-VGDGIVEVKERKTLEKVDTKVEDVLSKV 561


>gi|183981901|ref|YP_001850192.1| prolyl-tRNA synthetase ProS [Mycobacterium marinum M]
 gi|183175227|gb|ACC40337.1| prolyl-tRNA synthetase ProS [Mycobacterium marinum M]
          Length = 582

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 99/259 (38%), Positives = 146/259 (56%), Gaps = 1/259 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+++P DAE+ SHKL++R G I     G+YSWLPLG + L N+  +IREE 
Sbjct: 4   RMSELFLRTLRDDPADAEVPSHKLLIRAGYIRPVGPGLYSWLPLGLRVLRNIERVIREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +  
Sbjct: 64  NAIGGQEILFPALLPRAPYETTNRWTEYGDGVFRLQDRRGNDYLLGPTHEELFTLTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQIQ+K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y+    +Y
Sbjct: 124 YNSYKDFPLTLYQIQIKYRDEARPRAGILRAREFVMKDSYSFDIDSGGLKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFD 240
            RIF RL ++ + + A SG +GG  S EF+  +  GE   V C +      + +  T   
Sbjct: 184 QRIFDRLRVRYVIVSAVSGAMGGSASEEFLAESPVGEDTFVRCVESGYAANVEAVVTARP 243

Query: 241 DIISLNSIVEQWTAPYAAT 259
           + + ++   +        T
Sbjct: 244 ESLPIDGQPDAVVHDTGET 262



 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 96/189 (50%), Gaps = 5/189 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+   + V ARGIE+GHIF  G KY+   +A   G DGK   + MG
Sbjct: 395 GTIEAAEVREGDPAPDGAGQLVMARGIEIGHIFQLGRKYTDAFTADVLGEDGKPVRLTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA + E  HD  G+ WP  +APF + L  I   D   R     + + L  +
Sbjct: 455 SYGIGVSRLVAVIAEQHHDNLGLRWPAEIAPFGVHL-VIANKDAEARAGAIGLASELDGL 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL-EEV 434
           G +V  DD     G +F  A+LLG P  V+VG +  +D  VE++ R  G   ++++ + +
Sbjct: 514 GVEVLLDDRQASPGVKFKDAELLGMPWVVVVG-RGWADGVVELRDRFGGQTRELTVGDSL 572

Query: 435 INYASHRFS 443
               +   S
Sbjct: 573 ATDIAAAIS 581


>gi|300173485|ref|YP_003772651.1| prolyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887864|emb|CBL91832.1| Prolyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
          Length = 571

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 102/235 (43%), Positives = 147/235 (62%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+L+L+ G I   + G++S+LP+ ++ L+ +  IIREE
Sbjct: 1   MKQSKLLMPTLREIPADAEVKSHQLLLKAGFIRPVAAGMFSYLPMAKRVLNKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   A EM VP +  A+LW +SGRY++YG  + +  +R D+  I GPTHEE  T +   
Sbjct: 61  MNAIDANEMLVPEILPAELWEKSGRYETYGPALYKFKNRQDRDFILGPTHEETFTQLMSD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG++R+REF+MKDAYSF     G   +++ M  +
Sbjct: 121 DIKSYKKLPLVVYQIQPKFRDENRPRFGLLRTREFIMKDAYSFSADQAGLDQAFHNMETA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y++IF R+GL    +  ++G +GG  S EF   A  GE  +  S    D+    E
Sbjct: 181 YIKIFDRIGLSYRAIVGDAGAMGGSDSKEFSAPAAAGEDIIAYSD-ATDYAANLE 234



 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 99/175 (56%), Gaps = 1/175 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            + + V   GIE+GHIF  GT+YS  + A     +G+   + MGSYGIG  R+++A++E 
Sbjct: 398 GKGQLVFTPGIEIGHIFKLGTRYSKVLGAQVLNENGRQTDMIMGSYGIGVSRLLSAIVEQ 457

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G+IWP +VAPF + ++ +   D        ++   L+  G +V  DD  E+ G +
Sbjct: 458 KADADGLIWPANVAPFDVHIVPVNIKDADQVRVAGQLETLLTTQGLEVLVDDRKERAGVK 517

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           FA ADL+G P+++ VG K  S+  VE+K R +    +M L EV++  S   S ++
Sbjct: 518 FADADLIGLPIRITVGKK-ASEDIVEVKVRASNTNIEMRLSEVVDSVSVLLSGDK 571


>gi|42519365|ref|NP_965295.1| prolyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
 gi|81832202|sp|Q74IS2|SYP_LACJO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|41583653|gb|AAS09261.1| prolyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
          Length = 565

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 115/282 (40%), Positives = 154/282 (54%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF+R G+   P+ A+SG +GG  S EF   A  GE  +  ++    +    E     
Sbjct: 181 YLKIFNRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGT-YAANLEMAKSI 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           D         +  A  A       EKL D L        + I
Sbjct: 240 DTFKQEPEEAKDLAKVATPGMDTIEKLADFLKVPSTRIVKSI 281



 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/192 (33%), Positives = 93/192 (48%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFADIRTANEGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTDTMGADFLDNNGKAK 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++A +E      GI WP  +APF I LI +K  D+      EK+  
Sbjct: 435 PVIMGSYGIGVTRMLSAAVEQHLTENGIAWPKEIAPFAIHLIQMKMKDETQTKLAEKLEK 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            LS    DV +DD  E+ G +F  ADL+G PL++ +G K   D  VE+K  +     +++
Sbjct: 495 ELSAK-YDVLYDDRNERPGVKFNDADLVGAPLRITIGRK-AKDGIVEVKRPMDEKATEVN 552

Query: 431 LEEVINYASHRF 442
           + ++    +   
Sbjct: 553 ISDLDAVITKEL 564


>gi|268319258|ref|YP_003292914.1| hypothetical protein FI9785_773 [Lactobacillus johnsonii FI9785]
 gi|262397633|emb|CAX66647.1| proS [Lactobacillus johnsonii FI9785]
          Length = 565

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 115/282 (40%), Positives = 154/282 (54%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF+R G+   P+ A+SG +GG  S EF   A  GE  +  ++    +    E     
Sbjct: 181 YLKIFNRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGT-YAANLEMAKSI 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           D         +  A  A       EKL D L        + I
Sbjct: 240 DTFKQEPEEAKDLAKVATPGMDTIEKLADFLKVPSTRIVKSI 281



 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/192 (33%), Positives = 94/192 (48%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFADIRTANEGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTDTMGADFLDNNGKAK 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++A +E      GI WP  +APF I LI +K  D+   +  EK+  
Sbjct: 435 PVIMGSYGIGVTRMLSAAVEQHLTENGIAWPKEIAPFAIHLIQMKMKDETQTELAEKLEK 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            LS    DV +DD  E+ G +F  ADL+G PL++ +G K   D  VE+K  +     +++
Sbjct: 495 ELSAK-YDVLYDDRNERPGVKFNDADLVGAPLRITIGRK-AKDGIVEVKRPMDEKATEVN 552

Query: 431 LEEVINYASHRF 442
           + ++    +   
Sbjct: 553 ISDLDAVITKEL 564


>gi|329667116|gb|AEB93064.1| prolyl-tRNA synthetase [Lactobacillus johnsonii DPC 6026]
          Length = 565

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 115/282 (40%), Positives = 154/282 (54%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF+R G+   P+ A+SG +GG  S EF   A  GE  +  ++    +    E     
Sbjct: 181 YLKIFNRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGT-YAANLEMAKSI 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           D         +  A  A       EKL D L        + I
Sbjct: 240 DTFKQEPEEAKDLAKVATPGMDTIEKLADFLKVPSTRIVKSI 281



 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/192 (33%), Positives = 94/192 (48%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFADIRTANEGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTDTMGADFLDNNGKAK 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++A +E      GI WP  +APF I LI +K  D+   +  EK+  
Sbjct: 435 PVIMGSYGIGVTRMLSAAVEQHLTENGIAWPKEIAPFAIHLIQMKMKDETQTELAEKLEK 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            LS    DV +DD  E+ G +F  ADL+G PL++ +G K   D  VE+K  +     +++
Sbjct: 495 ELSAK-YDVLYDDRNERPGVKFNDADLVGAPLRITIGRK-AKDGIVEVKRPMDEKATEVN 552

Query: 431 LEEVINYASHRF 442
           + ++    +   
Sbjct: 553 ISDLDAVITKEL 564


>gi|116629465|ref|YP_814637.1| prolyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|282850819|ref|ZP_06260193.1| proline--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|311110887|ref|ZP_07712284.1| proline--tRNA ligase [Lactobacillus gasseri MV-22]
 gi|122273597|sp|Q044C3|SYP_LACGA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116095047|gb|ABJ60199.1| Prolyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|282557771|gb|EFB63359.1| proline--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|311066041|gb|EFQ46381.1| proline--tRNA ligase [Lactobacillus gasseri MV-22]
          Length = 565

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 109/265 (41%), Positives = 148/265 (55%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MNNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF+R G+   P+ A+SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YLKIFNRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGTYAANLEMAKSID 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                    ++ T       D  ++
Sbjct: 241 TFKQDPEDAKELTKVATPGMDTIDK 265



 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 93/192 (48%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFADIRTANEGELDPVDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDNNGKAK 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++A +E      GI WP  +APF + LI +K  D+   +  EK+  
Sbjct: 435 PVIMGSYGIGVTRMLSAAVEQHLTENGIAWPKEIAPFDVHLIQMKMKDEAQTELAEKLEK 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            LS    DV +DD  E+ G +F  ADL+G PL++ +G K   D  VE+K        +++
Sbjct: 495 ELSTK-YDVLYDDRNERPGVKFNDADLVGAPLRITIGRK-AKDGIVEVKRPTDEKAMEVN 552

Query: 431 LEEVINYASHRF 442
           + ++    +   
Sbjct: 553 ISDLDAMITKEL 564


>gi|121612820|ref|YP_999926.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|166223331|sp|A1VXT5|SYT_CAMJJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|87250382|gb|EAQ73340.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 602

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 150/444 (33%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD      +L L T    +   G+  WL  G +    +  ++ +   
Sbjct: 194 LKEYLTIIEEAKKRDHRKLGTELKLFT-FDDEIGGGLPIWLSNGARLRSKLEHMLYKIHR 252

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P L  AD W  SG Y +Y + M      +++     P +      I++S +
Sbjct: 253 LRGYEPVRGPELLKADAWKISGHYANYKENM-YFTQIDEQEYGIKPMNCVGHIKIYQSDV 311

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LP  F++  +  R E      G+ R REF   DA+ F + P   K    ++    
Sbjct: 312 RSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCM-PSQIKEQVLEILAFV 370

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +                               T   +     +  +    +     ++
Sbjct: 371 DNLMKLFDFSYEMEI------------------STKPEKAIGDDEIWEIATKALKEALNE 412

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D+L    +     ++    F   +++       
Sbjct: 413 QGLKYGIDEGGGAFYGPKIDI---KITDALKRKWQCGTVQVD----FNLPSRF----KLE 461

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  +D +      +    +G+      ++            +       + + I    + 
Sbjct: 462 YTDSDNEKKQPVMLHRAILGSFERFIGILTEHC------AGEFPFFIAPTAVGIVPIGEA 515

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                ++I   L ++  D    +  E +  +  +A+    P+ +++G   V    V ++ 
Sbjct: 516 HIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEVVKRSVALRD 575

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    ++++SL+E I     + S 
Sbjct: 576 RRAKEQKNLSLDEFIKLVKEKMSE 599


>gi|327314606|ref|YP_004330043.1| threonine--tRNA ligase [Prevotella denticola F0289]
 gi|326946255|gb|AEA22140.1| threonine--tRNA ligase [Prevotella denticola F0289]
          Length = 649

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 78/450 (17%), Positives = 151/450 (33%), Gaps = 38/450 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L      +  KG+  WLP G +    +  ++R      
Sbjct: 232 EYLVMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQDLLRRLLRPY 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P +   +L+V SG Y  YGK+  +       D+  +  P +     +++    
Sbjct: 291 NYQEVITPGIGGKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEVYAYKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    FR E      G+ R R F   DA+ F    +     +       
Sbjct: 351 RSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIFVRPEQVKTE-FETNIDII 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L++F   G  +   +                  D  + + +   D +     +      +
Sbjct: 410 LKVFKTFGFDNYEAQISLR--------------DPNDKEKYIGSDEVWEESEAAIKQACE 455

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++      F          
Sbjct: 456 EKGLKARVELGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLPNRF--------KL 504

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D        +     G++    AV+     G   +W           + I    +
Sbjct: 505 EYTAEDNSKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW------LTPDQVAILPISE 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+ A L         DD  E+IG +    +L   P  VIVG K  ++  V ++
Sbjct: 559 KYNDYAFKVKAYLDAHDLRSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEAAEGLVSMR 618

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  G +  M++E      +   ++    L
Sbjct: 619 QQGGGEQATMTMEAFAERINAEVADQLKTL 648


>gi|42560810|ref|NP_975261.1| threonine-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|42492306|emb|CAE76903.1| threonine-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301321098|gb|ADK69741.1| threonine--tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 639

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 156/436 (35%), Gaps = 37/436 (8%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD  + +  L +  G       G+  WLP G    + +   +R+++     I +  P + 
Sbjct: 236 RDHRLINKTLNIF-GFDQLVGAGLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETPPIG 294

Query: 76  SADLWVESGRYDSYGKEMLRLADR---NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           + +L+  SG +D YG++M +  +    +D+  I  P +      +++   +SYR+LP   
Sbjct: 295 TVELYKTSGHWDHYGEDMFQPFNGGKGSDEQFILRPMNCPHHIAVYKQEQRSYRDLPLRI 354

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +  ++ R E      G+ R R   + D++ F  + +                  R   K
Sbjct: 355 CEHAIQHRFESSGSLTGLERVRGMKLTDSHIFVRSDQIEDEF-------------RSTYK 401

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIISLNSIVE 250
            I     +  I  D     + L D  +   F   D   D    S      D+        
Sbjct: 402 LISEVLNTFNIQIDYLS--LSLRDPNDKVKFYKDDLMWDKAESSLEKVLIDLGLKYEKRI 459

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+   ++  +      VS   ++      F          T+   D K  
Sbjct: 460 GDAAFYGPKLDI---QIKTAQNHEITVSTIQLDFLMPNKFD--------LTYIDKDQKLV 508

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              M     G +      I +  +    + P  + P ++ +I I    +   +    I+ 
Sbjct: 509 RPIMIHR--GLIGTYERFIATLLEQTKGVLPLWLVPKQVEIIPI---SESNLEYANLIHQ 563

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L K       D   E++  +   A     P Q+++G+K V ++ +  +   +  +  +S
Sbjct: 564 KLKKEFIRSHIDLRDERLSYKIRDAQTKKVPYQLVLGNKEVENNTITYRQYGSEKQITIS 623

Query: 431 LEEVINYASHRFSNNR 446
           ++E ++    +  + +
Sbjct: 624 IQEFVDMLKQQIKDKK 639


>gi|227503501|ref|ZP_03933550.1| threonyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
 gi|227076004|gb|EEI13967.1| threonyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
          Length = 687

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 61/448 (13%), Positives = 135/448 (30%), Gaps = 47/448 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L +    +   G   + P G      +    R    + G   ++
Sbjct: 260 EEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPNGATVRMEMENHSRNRHVQAGYSFVN 318

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRND------------KAMIYGPTHEEVMTDIF 118
            P +   DL+ +SG  D Y   M      +             +     P +  +   IF
Sbjct: 319 TPHITKGDLFRKSGHLDFYSDGMFPPMQLDGEYDAEGNTVKEPQDYYAKPMNCPMHNLIF 378

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            S  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +  +    ++
Sbjct: 379 ASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTEEQLEEEL-TQV 437

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               + +    GL    +   +                    +   S +  +       +
Sbjct: 438 LDFIISLLEDYGLSDFYLELST----------------KDPNKFVGSDEIWERSTAILQS 481

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +          +  A Y       + +  D++    ++S   ++    F    ++ L 
Sbjct: 482 VAEKSGLELVPDPEGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLPERFELE 534

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +A+      K   + +     G++     V+   + G    W        I +      
Sbjct: 535 YTAS---DGTKKRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVMGIPVA----- 586

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   E + A+L + G     D   +++  +         P  ++ G++ V    V 
Sbjct: 587 -DDFVPHLEGVAAKLRRKGIRADVDTSDDRMQKKIRNHTTGKVPFMLVAGARDVEAGAVS 645

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            +         + ++E +   S   +  
Sbjct: 646 FRFLDGTQVNGVPVDEAVELISTWVAER 673


>gi|315124065|ref|YP_004066069.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017787|gb|ADT65880.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 508

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 112/271 (41%), Positives = 159/271 (58%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAA--- 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                    E+  A YA+     N K  DSL
Sbjct: 237 KRAKKTCQDERPEANYASKFHTPNIKTIDSL 267



 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 5/162 (3%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 346 DFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKEGDCCVKCGAKLKQS 405

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD KG I
Sbjct: 406 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEANHDEKGCI 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           W  ++APF + +I     D+   +   K+Y  L+ +G +V  
Sbjct: 466 WNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLL 507


>gi|161760548|ref|NP_907033.2| threonyl-tRNA synthetase [Wolinella succinogenes DSM 1740]
          Length = 602

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 149/441 (33%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      ++ L          G+  WLP G +    + A++ E   R  
Sbjct: 197 YLHQMEEAKKRDHRKVGTEMGLFI-FDEDVGAGLPIWLPAGARLRRRLEAMLTEAHIRRN 255

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +DLW  SG Y +Y + M      ++      P +      ++ S ++SY
Sbjct: 256 YEPVRGPEILKSDLWKISGHYQNYKENM-YFTKIDEVEYGIKPMNCVGHIKVYGSGVRSY 314

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  FY+  +  R E      G++R REF   DA+ F    +      + +     +I
Sbjct: 315 RELPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCRPEQIKDEVVDIVH-FVDKI 373

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G                          T   +    +   +    +     +    
Sbjct: 374 MSAFGFNYEMEI------------------STRPEKSIGDEAIWEKGTQALKEALEAQGL 415

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D++    +     I++                 +  
Sbjct: 416 QYGIDEGGGAFYGPKIDI---KITDAIGRKWQCGTVQIDMNLP--------ERFELAYTD 464

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +        +    +G+     A++     G+   +   +AP  ++++ I    +   +
Sbjct: 465 ENNTPQRPVMIHRAILGSFERFVAILTEHFGGEFPFF---IAPTPVAIVPIG---EEQLE 518

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L KVG      D  E +  +    +    P+ V++G + V++ KV I+ R  
Sbjct: 519 YAKHLRLELQKVGVYAEIHDKNETLNKKIRTVEKQRVPMIVVLGEREVNEKKVAIRDRRE 578

Query: 424 GIREDMSLEEVINYASHRFSN 444
             + ++   E I  A  + S 
Sbjct: 579 KRQYELGEAEFIQLAKEKMSE 599


>gi|319442178|ref|ZP_07991334.1| threonyl-tRNA synthetase [Corynebacterium variabile DSM 44702]
          Length = 697

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 66/454 (14%), Positives = 139/454 (30%), Gaps = 48/454 (10%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +L +   RD      +L L +    +   G   + P G      +    R     +G
Sbjct: 265 YQTMLAEAEKRDHRRLGSELDLFS-FPDEIGSGFPVFHPDGATVRMEMEEHSRRRHIASG 323

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEEV 113
              ++ P +   DL+ +SG  D Y   M      +++                 P +  +
Sbjct: 324 YSFVNTPHITKGDLFKKSGHLDWYADGMFPAMKLDEERDADGNITKQAVDYYAKPMNCPM 383

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  + 
Sbjct: 384 HNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYC-TEDQLEV 442

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    + +    GL    +   +                    +   S +  +   
Sbjct: 443 ELTTVLEFIISLLKDYGLDDFYLELST----------------KDPKKFVGSDEVWEKAT 486

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +     +          +  A Y       + +  D++    ++S   ++    F    
Sbjct: 487 NTLRAVAEKSGLELVPDPEGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLPE 539

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           ++ L  +A+      K   V +     G++     V+   + G    W        I + 
Sbjct: 540 RFDLEYTAS---DGTKQRPVMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVTGIPVA 596

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                        E++ A L   G     D   +++  +         P  ++VG + V 
Sbjct: 597 ------DEFIPYLEEVTAELRGHGIRAAVDTSDDRMQKKIRNHTTGKVPFMLLVGGRDVE 650

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              V  +         +  E+ +   +   S+ R
Sbjct: 651 AGAVSFRFLDGTQVNGVPKEDAVRIIAEWVSSRR 684


>gi|225619417|ref|YP_002720643.1| prolyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
 gi|254782887|sp|C0QY98|SYP_BRAHW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225214236|gb|ACN82970.1| prolyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
          Length = 578

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 114/251 (45%), Positives = 163/251 (64%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+P L+E P DA IAS+KLMLR  +  + S G+YS+LPLG + L+ ++ IIREE
Sbjct: 1   MRLSKLFMPTLKEAPSDAIIASNKLMLRAALARKISNGLYSYLPLGVRVLNKISNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E  +P L S +L   SGR++ + KE+ RL DRND  M  GPTHEE  T   ++
Sbjct: 61  MDAIGSNECIMPILVSKELLTPSGRWERFKKELFRLKDRNDVDMAMGPTHEEAFTITAQN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY++ P T YQI  KFRDE+RPRFGV+RS+EF MKDAYSF +T E    +YN M  +
Sbjct: 121 EIQSYKDFPLTLYQIHTKFRDEIRPRFGVIRSKEFTMKDAYSFHITKECLDKTYNDMSGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL ++ ++A+SG +GG+ S EF+VL++ GE  +       D+    E  +  
Sbjct: 181 YTKIFKRMGLDTVSVKADSGAMGGEGSEEFMVLSEVGEETIIFCSKC-DYRANVEKANVK 239

Query: 241 DIISLNSIVEQ 251
           +  +  S  ++
Sbjct: 240 EEEAAKSYTDK 250



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 9/197 (4%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D    K  D  P+        +G+E+GHIF  G KY+   +      + K+    MG
Sbjct: 381 VWGDFRTAKEGDRCPQCGETLYQKKGLELGHIFKLGDKYTEAFNFKVLDENNKEITPIMG 440

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R +A+VIE ++D KGII+P SVAP++  ++ I    +      E+IY  L+ +
Sbjct: 441 CYGIGVNRALASVIEQNYDDKGIIFPISVAPYEAIVVAIDKETEDSFKKAEEIYNTLNSI 500

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +  +DD  E++G +    DL+G P+++IVG K +    VE K R +    ++ +E++I
Sbjct: 501 GVETMFDDRKERLGVKLNDCDLIGIPIRIIVGKKSLQKGVVEFKLRKSQESVEVKVEDII 560

Query: 436 NYAS-------HRFSNN 445
            Y         +  ++ 
Sbjct: 561 EYVKTKKQELFNEINSR 577


>gi|307747462|gb|ADN90732.1| Prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni M1]
 gi|315931738|gb|EFV10693.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 327]
          Length = 568

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 113/271 (41%), Positives = 159/271 (58%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G I Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFIEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAA--- 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                    E+  A YA+     N K  DSL
Sbjct: 237 KRAKKTCQDERPEANYASKFHTPNIKTIDSL 267



 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 346 DFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKEGDCCAKCGAKLKQS 405

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE+SHD KG I
Sbjct: 406 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEASHDEKGCI 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +    +L+G
Sbjct: 466 WNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMNDFELMG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 526 FPYALVIG-KGLENNEIELIQREGLVKELIKTDELMEILKKKV 567


>gi|301089746|ref|XP_002895146.1| threonyl-tRNA synthetase [Phytophthora infestans T30-4]
 gi|262101719|gb|EEY59771.1| threonyl-tRNA synthetase [Phytophthora infestans T30-4]
          Length = 744

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 150/442 (33%), Gaps = 38/442 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  K+F    +   RD         L     H  S G   WLP G      +   IRE+
Sbjct: 332 MKEWKHFQA--EAAKRDHRRLGVSEELF--FFHSLSPGSGFWLPHGSAIYFKLLKFIREQ 387

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G  E+  P + + +LW  SG    Y + M  + D   +     P +    + +F  
Sbjct: 388 YRARGYTEIITPNIYNMELWNISGHAQHYKENMF-VFDVEGQEYALKPMNCPAASLMFDF 446

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+EL     G+ R R F   DA+ F    +  K      F+
Sbjct: 447 RQRSYRELPIRLADCGVLHRNELSGALTGLTRVRRFQQDDAHIFCRDDQIKKE--VLDFL 504

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           ++++  + +      +   + P       E    A+T                 ++  D 
Sbjct: 505 TFMKYVYDVFGIEFNLELSTRPEKAMGELEQWERAETQL---------------AQALDE 549

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   +     A Y    D+    + D+L    + +   ++    F    +++L   
Sbjct: 550 FVGAGKWVVNPGDGAFYGPKIDIM---ITDALKRQHQCATVQLD----FQLPIRFNLKYR 602

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                A+     V +     G++    AV+   + GK   W           I I     
Sbjct: 603 T--DDAENFKRPVIIHRAIYGSLERFVAVLVEHYAGKFPFW------LSPRQILIVTVGA 654

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++   L + G DV  DD G+ +  +     +  +   ++VG+       V I+
Sbjct: 655 AFVDYGYEVKDALFRAGFDVEIDDSGKTLNKKIREGQMAHYNFILVVGAHEKETRSVNIR 714

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R   +R   +LEE I+     
Sbjct: 715 TRDNKVRGTKTLEEAISMFKDL 736


>gi|325847870|ref|ZP_08170092.1| proline--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480888|gb|EGC83941.1| proline--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 572

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 106/239 (44%), Positives = 161/239 (67%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S Y++P L+++P+DAE  SHKL++R   I + S G+YS+LPLG + ++ +  I+R+ 
Sbjct: 1   MRLSNYYMPTLRDDPQDAETQSHKLLVRGAFIRKTSSGVYSYLPLGMRVINKIENIVRKS 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  +IE+S   LQS D+W +SGR+ ++G EM ++ DR+D+    GPT EE  T + + 
Sbjct: 61  MEKYDSIEVSTSVLQSKDIWEKSGRWQNFGPEMFKIKDRHDREYCLGPTAEEQFTSLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG+ RSR+F+MKDAYSFD+  EG + SY KM+ +
Sbjct: 121 ELNSYKQLPLNLYQIVSKFRDEKRPRFGINRSRDFIMKDAYSFDVDMEGLEKSYQKMWDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y+ +F  LGL    +  +SG +GG+ SHEF+ LA+TGE ++F +++  D+    E+  F
Sbjct: 181 YVEVFDALGLDYKIVEGDSGAMGGNTSHEFMALAETGEGEIFYTEN-SDYAATDESAKF 238



 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 91/174 (52%), Gaps = 1/174 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            + +   ARGIEVG+IF  GTKYS  + A F   +GK     MGSYGIG  R ++A+IE 
Sbjct: 397 GKEELKIARGIEVGNIFQLGTKYSESLEAYFLDENGKQKPFIMGSYGIGITRSISAIIEQ 456

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++D  GIIWP  VAPF+  +  +  + +  +   EKIY  L   G +V  DD  E+ G +
Sbjct: 457 NYDDNGIIWPTKVAPFEAWITLVNKNKEDQKQLAEKIYESLLDQGIEVMLDDRKERAGVK 516

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           F   DL+G P ++ VG K  SD  VE   R       MS +E I         +
Sbjct: 517 FNDRDLVGCPYRITVG-KDASDDIVEFSKRSDMENLKMSSDEAIEKIVTSIKED 569


>gi|157414824|ref|YP_001482080.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|172047085|sp|A8FKW6|SYP_CAMJ8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157385788|gb|ABV52103.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
          Length = 568

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 113/271 (41%), Positives = 159/271 (58%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G I Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFIEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGCEFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAA--- 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                    E+  A YA+     N K  DSL
Sbjct: 237 KRAKKTCQDERPEANYASKFHTPNIKTIDSL 267



 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 346 DFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKEGDCCAKCGAKLKQS 405

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE+SHD KG I
Sbjct: 406 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEASHDEKGCI 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +    +L+G
Sbjct: 466 WNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMNDFELMG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 526 FPYALVIG-KGLENNEIELIQREGLVKELIKTDELMEILKKKV 567


>gi|238852615|ref|ZP_04643025.1| proline--tRNA ligase [Lactobacillus gasseri 202-4]
 gi|238834761|gb|EEQ26988.1| proline--tRNA ligase [Lactobacillus gasseri 202-4]
          Length = 565

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 109/265 (41%), Positives = 147/265 (55%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MNNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF R G+   P+ A+SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YLKIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGTYAANLEMAKSID 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                    ++ T       D  ++
Sbjct: 241 TFKQDPEDAKELTKVATPGMDTIDK 265



 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/192 (33%), Positives = 93/192 (48%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFADIRTANEGELDPVDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDNNGKAK 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++A IE      GI WP  +APF + LI +K  D+   +  EK+  
Sbjct: 435 PVIMGSYGIGVTRMLSAAIEQHLTENGIAWPKEIAPFDVHLIQMKMKDEDQTELAEKLEK 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            LS    DV +DD  E+ G +F  ADL+G PL++ +G K   D  VE+K       +++ 
Sbjct: 495 ELSTK-YDVLYDDRNERPGVKFNDADLVGAPLRITIGRK-AKDGIVEVKRPTDEKAKEVD 552

Query: 431 LEEVINYASHRF 442
           + ++    +   
Sbjct: 553 ISDLDAMITKEL 564


>gi|300361905|ref|ZP_07058082.1| proline--tRNA ligase [Lactobacillus gasseri JV-V03]
 gi|300354524|gb|EFJ70395.1| proline--tRNA ligase [Lactobacillus gasseri JV-V03]
          Length = 565

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 109/265 (41%), Positives = 148/265 (55%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SH+LMLR G I Q + G+Y++LPLG + L     II EE
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLGYRVLRKAENIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MNNINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLQDRHGRESLLGPTHEETFTEIVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDQQFDDQKGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF+R G+   P+ A+SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YLKIFNRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGTYAANLEMAKSID 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                    ++ T       D  ++
Sbjct: 241 TFKQEPEDAKELTKVATPGMDTIDK 265



 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/192 (34%), Positives = 93/192 (48%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFADIRTANEGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDNNGKAK 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++A +E      GI WP  +APF I LI +K  D+   +  EK+  
Sbjct: 435 PVIMGSYGIGVTRMLSAAVEQHLTKNGIAWPKEIAPFAIHLIQMKMKDETQTELAEKLEK 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            LS    DV +DD  E+ G +F  ADL+G PL++ +G K   D  VE+K        ++S
Sbjct: 495 ELSTK-YDVLYDDRNERPGVKFNDADLVGAPLRITIGRK-AKDGIVEVKRPTDEKATEIS 552

Query: 431 LEEVINYASHRF 442
           + ++    +   
Sbjct: 553 ISDLDAMITKEL 564


>gi|323356826|ref|YP_004223222.1| prolyl-tRNA synthetase [Microbacterium testaceum StLB037]
 gi|323273197|dbj|BAJ73342.1| prolyl-tRNA synthetase [Microbacterium testaceum StLB037]
          Length = 600

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 99/249 (39%), Positives = 144/249 (57%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S +FL  L+E+P DAE+ASH+L++R G I +++ GI++WLPLG K    +  ++REE 
Sbjct: 6   RLSNFFLRTLREDPSDAEVASHRLLVRAGYIRRNAPGIFAWLPLGLKVKAKIETVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+  P L   + +  +GR++ YG  + RL DR     +  PTHEE+ T + +  
Sbjct: 66  ANAGAFEVHFPALLPREPYEVTGRWEEYGDALFRLQDRKGADYLLAPTHEEMFTLLVKDL 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF MKDAYSFD T  G   SY     +Y
Sbjct: 126 YSSYKDLPLTIYQIQDKYRDEARPRAGLLRGREFTMKDAYSFDATDAGLNASYQAQRDAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL+ + + A++G +GG  S EF+     GE     S       + +  T   +
Sbjct: 186 ERIFTRLGLEYVIVAADAGAMGGSKSEEFLHPTPIGEDTFVRSAGGYAANVEAFTTVVPE 245

Query: 242 IISLNSIVE 250
            + +    +
Sbjct: 246 ALPIEGQPD 254



 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 98/185 (52%), Gaps = 5/185 (2%)

Query: 258 ATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +V   +  D  P+       ARG+E+GH+F  G KY+  +       +GK   V MG
Sbjct: 417 GFVEVSTVRAGDPAPDGSGPVELARGMEIGHVFQLGRKYAEALGLKVLDENGKLATVTMG 476

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R++A + E ++D KG+IWP SVAPF + ++     D    +  E++ A L   
Sbjct: 477 SYGIGVTRILAIIAELNNDEKGLIWPASVAPFDVHVVATG-RDAAAFELAEQVSADLEAA 535

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G DV +DD      G +F  A+L+G P  +IVG +  ++ +VE+  R TG RE + + + 
Sbjct: 536 GLDVLYDDRPKVSPGVKFGDAELVGIPRILIVG-RGAAEGQVELWDRRTGERETLPVADA 594

Query: 435 INYAS 439
           +   +
Sbjct: 595 LAALA 599


>gi|317008795|gb|ADU79375.1| threonyl-tRNA synthetase [Helicobacter pylori India7]
          Length = 612

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 150/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F    +      + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSE-VSTILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G         + P                           +    +      +   
Sbjct: 384 MQAFGFSYEM-ELSTRPAKS-----------------IGDDKVWEKATNALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 EYNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +   A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FAFKLKEALKKHDIFVEVLDKNDSLNKKVRSAEKQKIPMILVLGNEEVESEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|261368006|ref|ZP_05980889.1| threonine--tRNA ligase [Subdoligranulum variabile DSM 15176]
 gi|282569994|gb|EFB75529.1| threonine--tRNA ligase [Subdoligranulum variabile DSM 15176]
          Length = 596

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 150/439 (34%), Gaps = 40/439 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD      ++  R  M      +G+  +LP G      +   I++++   G + + 
Sbjct: 189 EARERDHRKIGKEM--RLFMTDDLVGRGLPMFLPNGYIVWQQLEDYIKQKERERGYLHVM 246

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + + +L+  SG +D Y + M    +   ++ +  P +      I+ +   SYR LP 
Sbjct: 247 TPCIGTVNLYRTSGHWDHYRENMFPAMEMEGESYVLRPMNCPHHMMIYANQPHSYRQLPI 306

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +I   FR E      G+ R R F   DA+   +TPE  K     +      ++    
Sbjct: 307 RIGEIAHDFRYESSGTLKGIERGRHFCQNDAH-LFVTPEQIKDEVAAVCALIFDVYKDFH 365

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIISLNSI 248
           +                        D  + + +   D   +    +      ++    + 
Sbjct: 366 ITDYRCVLSLR--------------DPADKKKYHDDDAMWNHAEQALREVLTELGIQFTE 411

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    DV    +  ++     +S   ++    F    K+      T+   DG 
Sbjct: 412 EIGEAAFYGPKLDV---NVKPAVGAEYTLSTCQLD----FCLPAKF----HLTYVDKDGS 460

Query: 309 DHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +    +     +G++    A +     G+   W   V    + +       +   D   +
Sbjct: 461 EKTPVVLHRAILGSLDRFMAYLIEETKGRFPTWLAPVQVKVLPV------SEKTLDYARE 514

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVA-DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +  +L   G     D+  E+IG +  +A      P  +++G+K V    + +++R  G  
Sbjct: 515 VNDKLKAAGIRAVLDESNEKIGYKIRLAQQEDRAPYMLVLGAKEVEAGNISVRNRK-GET 573

Query: 427 EDMSLEEVINYASHRFSNN 445
             M L+  +       +N 
Sbjct: 574 TAMDLDAFVAQVKDEIANK 592


>gi|50954884|ref|YP_062172.1| prolyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|81826655|sp|Q6AEX8|SYP_LEIXX RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|50951366|gb|AAT89067.1| prolyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 590

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 102/284 (35%), Positives = 144/284 (50%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R + YFL  L+E+P DAE+ SH+L++R G I + + G+++WLPLG +    +  IIREE 
Sbjct: 4   RLTNYFLRTLREDPADAEVTSHRLLVRAGYIRRQAPGVFAWLPLGLRVKAKIERIIREEL 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA E+  P L   + +  +GR++ YG  +  L DR     +  PTHEE  T + +  
Sbjct: 64  AAAGAHEVHFPALLPREPYEITGRWEEYGDALFHLKDRKGADYLLAPTHEEAFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T +QIQ K+RDE RPR G++R REF MKDAYSFD T  G   SY     +Y
Sbjct: 124 YSSYKDLPLTIFQIQDKYRDEARPRAGLLRGREFTMKDAYSFDATDAGLDVSYQAQRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL  + ++A++G +GG  S EF+     GE     S       + +  T    
Sbjct: 184 ERIFARLGLDFVIVQADAGAMGGSRSEEFLHPTPIGEDTFVRSAGGYAANVEAFTTVAPP 243

Query: 242 IISLN--SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                     E    P A T     E   +  P          +
Sbjct: 244 ARPFEGLPSPEVHDTPNAPTIQALVEVANEQSPRPDGRVWTAAD 287



 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/185 (34%), Positives = 100/185 (54%), Gaps = 5/185 (2%)

Query: 258 ATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +V   K  D  P+       ARG+E+GH+F  G KY+  +  T    +GK   V MG
Sbjct: 405 GTVEVAEVKAGDPAPDGSGPVELARGMEIGHVFQLGRKYADALGLTVLDENGKLVTVTMG 464

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R++A + E ++D KG++WP++VAPF + ++     +QV  D  E+  A+L  V
Sbjct: 465 SYGIGVTRILAIIAEENNDDKGLVWPEAVAPFDVHVVAAG-REQVAFDVAEQAVAQLEAV 523

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G DV +DD      G +F  A+L+G P  ++VG +  +  +VE+  R  G    + L E 
Sbjct: 524 GLDVLYDDRPKVSPGVKFGDAELIGVPRVLVVG-RGAAQGEVELWDRRGGNHTTLPLSEA 582

Query: 435 INYAS 439
           +   +
Sbjct: 583 VAALT 587


>gi|295836236|ref|ZP_06823169.1| proline-tRNA ligase [Streptomyces sp. SPB74]
 gi|295825921|gb|EFG64555.1| proline-tRNA ligase [Streptomyces sp. SPB74]
          Length = 563

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 111/269 (41%), Positives = 154/269 (57%), Gaps = 4/269 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + + + G++SWLPLG+K LDN++ I+REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLSHKLLVRAGYVRRTAAGVWSWLPLGKKVLDNISQIVREEL 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  +GR++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGAQEVLLPALLPREPYEATGRWEEYGDLLFRLKDRKGADYLLGPTHEEIFTQVVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REFLMKD+YSFD T EG   SY     +Y
Sbjct: 126 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFLMKDSYSFDTTDEGLAESYALHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +IF RLGL    + A SG +GG  S EF+  A  GE   F       F   +E   F  
Sbjct: 186 RKIFARLGLDYRIVSAVSGAMGGSASEEFLAPAAAGE-DTFADCPNCGFAANTEAVTFKG 244

Query: 242 I---ISLNSIVEQWTAPYAATSDVHNEKL 267
                S +  VE+   P   T +   E L
Sbjct: 245 AAVDGSAHGPVEELDTPDTPTIETLAEHL 273



 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 6/177 (3%)

Query: 266 KLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           +  D  P   +     R IE+GHIF  G KY+        G +GK   V MGSYGIG  R
Sbjct: 389 QEGDPCPNCGQGLHLDRAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYGIGVSR 448

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            VAA+ E + D KG+ WP  VAP  +    + A   +  +   ++  +L+  G  V  DD
Sbjct: 449 AVAALAEQTADDKGLCWPAEVAPADVH--VVAAGKVLQTELALEVADKLAAAGARVLVDD 506

Query: 384 M-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             G   G +F  A+L+G P  VI G +  ++  VE+K R TG RE++ +EE +   +
Sbjct: 507 RAGVSPGVKFTDAELIGVPKTVIAGRR-AAEGIVELKDRRTGEREELPVEEAVARLT 562


>gi|332797162|ref|YP_004458662.1| threonyl-tRNA synthetase [Acidianus hospitalis W1]
 gi|332694897|gb|AEE94364.1| threonyl-tRNA synthetase [Acidianus hospitalis W1]
          Length = 542

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 160/438 (36%), Gaps = 37/438 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + + +  D  I   K+ L +    +   G+  + P GQ   + +   ++E     G  E+
Sbjct: 128 LEKASETDHRILGEKMDLFS-FPEEAGPGLVLYHPKGQIIRNELIDYMKEINASMGYQEV 186

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
               +    LW  SG Y+ Y  +ML     +D+ +   P +      I++S  +SY++LP
Sbjct: 187 YTTHVYRTILWKISGHYEMYKDKMLIFTH-DDEELGIKPMNCPAHILIYKSRTRSYKDLP 245

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F +    +R E +   +G++R R F   D +   L  +  ++    +    L +  + 
Sbjct: 246 IRFSEFGNVYRWEQKGELYGLLRVRGFTQDDGH-VFLREDQLENEVKMLISKTLEVLAKF 304

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G K   +R                   T   +   + +  +    +       +     +
Sbjct: 305 GFKGDDVRINL---------------STRPDESIGTDEQWEKATNALVNALRSLNLKYQV 349

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E+  A Y    D     + DSL    ++S   ++    F    ++       +   DG 
Sbjct: 350 KEKEGAFYGPKIDFD---IRDSLGRWWQLSTIQVD----FNLPERF----KLEYVDKDGS 398

Query: 309 DHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 +     G++    A++     GK   W   ++P ++ ++ I       R+  EK
Sbjct: 399 KKRPVMVHRAIYGSIDRFLAILLEHFKGKLPTW---LSPIQVRILPINP---EVREYAEK 452

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + ++L  V      D   E +  +   A   G P  +I+G K    + V I+ R     +
Sbjct: 453 VLSKLVSVKIRAEIDSEEETLSKRIKKAYDDGVPYILIIGKKEAESNSVTIRARGNIEVK 512

Query: 428 DMSLEEVINYASHRFSNN 445
            + L++ ++  S    N 
Sbjct: 513 GVPLDKCVDAISKEIQNR 530


>gi|225874389|ref|YP_002755848.1| proline--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
 gi|254782879|sp|C1F3P3|SYP_ACIC5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225793232|gb|ACO33322.1| proline--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 585

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 109/236 (46%), Positives = 146/236 (61%), Gaps = 2/236 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+P L+E P DAE+ASHK +LR+G I Q   GIYS+L  GQ++++ +  I+REE 
Sbjct: 3   RWSRLFVPTLREAPSDAEVASHKFLLRSGYIRQLGAGIYSYLLFGQRSINKIVGIVREEM 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           ++ G  E  +P +  ADLW ESGR+   G  M RL DR    +  G THEEVMTDI R+ 
Sbjct: 63  DKIG-QEFLLPAIHPADLWRESGRWTVMGDNMFRLKDRKGAELCLGMTHEEVMTDIARNE 121

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SY+ LP  +YQIQ KFRDE RPR G++R R+FLMKD+YSFDL   G   SY+    +Y
Sbjct: 122 LRSYKQLPQIWYQIQNKFRDEPRPRSGLLRVRQFLMKDSYSFDLNQAGLDKSYDLHDAAY 181

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             IF R GL  + + A+SG +GG  S EF+V  D GE  +        +    E  
Sbjct: 182 RAIFTRCGLNFVVVEADSGAMGGSGSQEFMVYTDAGEDLIASCAKC-GYAANMEKA 236



 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 91/191 (47%), Gaps = 1/191 (0%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +T   AA      E     +       A+ +E+GHIF  GTKY+  M A     +GK+ 
Sbjct: 394 DFTWTVAADIRNAAEGEGCPVCGEPLKVAKAVEIGHIFKLGTKYTESMGARVLDENGKEV 453

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              MG YGIG  R++ A IE ++D  G   P S+APF + +      D+  R A E + A
Sbjct: 454 MPVMGCYGIGIERILTASIEQNNDANGFWLPRSIAPFDVVVTITNMADETLRQAGEALAA 513

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G DV  DD  E+ G +F  ADL+G P +  VG K +     E+  R T   +D++
Sbjct: 514 QLEAAGYDVLLDDREERAGVKFKDADLVGIPYRFNVGKKTLEGKT-ELVTRATASSQDVA 572

Query: 431 LEEVINYASHR 441
           L+  +      
Sbjct: 573 LDAAVEALKAL 583


>gi|119025818|ref|YP_909663.1| threonyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765402|dbj|BAF39581.1| threonyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
          Length = 711

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 63/461 (13%), Positives = 133/461 (28%), Gaps = 54/461 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 276 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 334

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 335 HHYSFVQTPHITKGGLYETSGHLQWYKDSMYPPMRLDEEKDENGNVIKQGFDYYLKPMNC 394

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 395 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 454

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 455 DEL-KSLLTFVLGLLKDFGLDDFYLELST----------------KDPHKYVGSDEIWEE 497

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +      +            A Y       + +  D++    +VS   ++    F  
Sbjct: 498 ATNTLAEVAKESGLDLVDDPCGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 550

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++       +  ADG           +   R +   IE         +  +   +   
Sbjct: 551 PERF----KLEYIAADGT------HQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAP 600

Query: 351 LINIKAHDQVCRDAC---EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  +     V  +     +K  A L +       D   ++ G +   A     P  +IVG
Sbjct: 601 VQVLGV--PVADEFAPHLQKFIASLEEETVRCEIDLSDDRFGKKIRNASKSKAPFILIVG 658

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            + ++++ V  + R       + ++E              V
Sbjct: 659 EEDMNNNAVSFRFRDGSQLNGVPVDEAKANILTVIKKRVQV 699


>gi|331703296|ref|YP_004399983.1| Threonine tRNA ligase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801851|emb|CBW54004.1| Threonine tRNA ligase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 639

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 158/436 (36%), Gaps = 37/436 (8%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD  + +  L +  G       G+  WLP G    + +   +R+++     I +  P + 
Sbjct: 236 RDHRLINKTLNIF-GFDQLVGAGLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETPPIG 294

Query: 76  SADLWVESGRYDSYGKEMLRLADR---NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           + +L+  SG +D YG++M +  +    +D+  I  P +      +++   +SYR+LP   
Sbjct: 295 TVELYKTSGHWDHYGEDMFQPFNGGKGSDEQFILRPMNCPHHIAVYKQEQRSYRDLPLRI 354

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +  ++ R E      G+ R R   + D++ F  + +                  R   K
Sbjct: 355 CEHAIQHRFESSGSLTGLERVRGMKLTDSHIFVRSDQIEDEF-------------RSTYK 401

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIISLNSIVE 250
            I    ++  I  D     + L D  +   F   D   D    S      D+        
Sbjct: 402 LISEVLKTFNIQIDYLS--LSLRDPNDKVKFYKDDLMWDKAESSLEKVLIDLGLKYEKRI 459

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+   ++  +      VS   ++      F          T+   D K  
Sbjct: 460 GDAAFYGPKLDI---QIKTAQNHEITVSTIQLDFLMPNKFD--------LTYIDKDQKLV 508

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              M     G +      I +  +    + P  +AP ++ +I I    +   +    I+ 
Sbjct: 509 RPIMIHR--GLIGTYERFIATLLEQTKGVLPLWLAPKQVEIIPI---SESNLEYANLIHQ 563

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L K       D   E++  +   A     P Q+++G+K V ++ +  +   +  +  + 
Sbjct: 564 KLKKEFIRSHIDLRDERLSYKIRDAQTKKVPYQLVLGNKEVENNTITYRQYGSDAQITVP 623

Query: 431 LEEVINYASHRFSNNR 446
           ++E I+    + ++ +
Sbjct: 624 IQEFIDMLKQQINDKK 639


>gi|269219392|ref|ZP_06163246.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211185|gb|EEZ77525.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 709

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 68/444 (15%), Positives = 130/444 (29%), Gaps = 45/444 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L +    +   G+  + P G      V + +       G   
Sbjct: 247 RIAEAERRDHRRLGAELDLFS-FPEEIGPGLVVFHPKGGILRHIVESYVTRRHLEEGFDF 305

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTD 116
           +  P +    L+  SG    Y   M                 R  +       +  +   
Sbjct: 306 VHTPEISKGGLFHTSGHLPYYADTMFPPMKVDEERGADGEVTRAGQDYYLKAMNCPMHNL 365

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +       
Sbjct: 366 IFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFTQDDSHTYCTPEQAKGE-IE 424

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +   +L I    GL    +   +   G                +   S +         
Sbjct: 425 MLLNFFLDILRDFGLTDFYLELSTRDEGKKKD------------KFIGSDEDWAAATRIL 472

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                             A Y       + ++ D+L    ++S    +            
Sbjct: 473 EEACAATGLDLVPDPGGAAFYGPKV---SVQVKDALGRTWQMSTVQYDFNQP-------- 521

Query: 296 LPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +   DG       + S  +G++     V+   + G    W             +
Sbjct: 522 ERFDLEYTAPDGSRRRPVMIHSAKLGSVERFIGVLTEHYAGAFPAW------LAPVQARL 575

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +     CE++ A+L   G  V  D   ++ G +   A     P  +I G +     
Sbjct: 576 VPVAEAFNPYCEEVAAKLRAAGIRVDVDLSDDRFGKKIRNAAKEKIPFTLIAGGEDAEAE 635

Query: 415 KVEIKHRLTGIREDMSLEEVINYA 438
            V  ++R       +S++E + + 
Sbjct: 636 AVSFRYRDGHQENGVSVDEAVAHI 659


>gi|71895375|ref|NP_001026618.1| threonyl-tRNA synthetase, cytoplasmic [Gallus gallus]
 gi|53128235|emb|CAG31282.1| hypothetical protein RCJMB04_4k14 [Gallus gallus]
          Length = 711

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 79/449 (17%), Positives = 158/449 (35%), Gaps = 44/449 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 294 KMLKEWEKFQEEAKNRDHRKIGRDQELF--FFHELSPGSCFFLPKGAYIYNTLIEFIRSE 351

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 352 YRKRGFQEVVTPNIFNSKLWMTSGHWQHYSENMFSFEVEKEI-FALKPMNCPGHCLMFDH 410

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +  +    K  +
Sbjct: 411 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCSVEQIEEE--IKSCL 468

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +LR  + +   S  +   + P       E    A+                        
Sbjct: 469 QFLRAVYDVFGFSFKLNLSTRPEKYLGDIEVWNRAEK-----------------QLENSL 511

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +D      +     A Y    D+   ++ D++    + +   ++    F      S+  +
Sbjct: 512 NDFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQL----SIRFN 560

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            TF   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 561 LTFVSHDGNDKTRPVIIHRAILGSVERMIAILT---ENYGGKWPLWLSPQQVMVVPVGP- 616

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +    G     D D G  +  +   A L  +   ++VG K  +   V
Sbjct: 617 --TCDEYAQKVRQQFHDAGLMADIDVDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTV 674

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I+ R   +  + ++ + +        + 
Sbjct: 675 NIRTRDNKVHGERTIADTVKRLLELKCSR 703


>gi|227529103|ref|ZP_03959152.1| prolyl-tRNA synthetase [Lactobacillus vaginalis ATCC 49540]
 gi|227350947|gb|EEJ41238.1| prolyl-tRNA synthetase [Lactobacillus vaginalis ATCC 49540]
          Length = 580

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 104/237 (43%), Positives = 145/237 (61%), Gaps = 2/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +E P DAE  SHK+M+R G I+Q S G++++LP+  + +  V  IIR+E
Sbjct: 1   MQQSKILIPTKKEAPSDAEALSHKMMVRAGYIYQVSAGVWAYLPMAYRVIRKVENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM +P L  ADLW ESGRY+SYG  + +L DR D+  I GPTHEE  T++ R 
Sbjct: 61  MEKAGAVEMMMPALLPADLWKESGRYESYGDNLFKLKDRRDRDFIMGPTHEETFTEVIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE RPR+G++R +EF M D YSF     G   +Y+    +
Sbjct: 121 SIKSYKKLPLVVYQLQDKFRDEDRPRYGILRGKEFEMLDGYSFSADQAGLDQAYDLQARA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF R+GL    + A+SG +GG  S EF   A+ GE  +  +    D+    E  
Sbjct: 181 YRNIFDRIGLDYKVILADSGTMGGKNSQEFSAPAEVGEDIIAYTDG--DYAANLEKA 235



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 2/228 (0%)

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK- 275
           GE     + +++   +       DD     +             D  N K  +  P+   
Sbjct: 343 GEDVKIYADNYVKVMVNMACGANDDGHHYINANIDRDFCVDQFGDFRNVKEGEIAPDGHP 402

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                GIE+GHIF  GT YS  + A     +G+   V MGSYGIG  R+++AV E + D 
Sbjct: 403 IKFTPGIEIGHIFKLGTHYSKKLGAQVLDNNGRLVDVIMGSYGIGVSRLLSAVAEQTADD 462

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++WPDS+APF + +I + A      +   ++   L K G DV  DD  E+ G +FA +
Sbjct: 463 NGLVWPDSIAPFDVHVIPVNAKKADQMEMANELTVALEKAGYDVLVDDRKERAGVKFADS 522

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           DL+G P+++ VG K  SD  VE+K R TG   ++  EEV+N  +    
Sbjct: 523 DLIGIPIRITVGKK-ASDGIVEVKIRKTGETVEVKTEEVVNTVAILLK 569


>gi|328778641|ref|XP_395662.3| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like isoform 1
           [Apis mellifera]
          Length = 718

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 70/439 (15%), Positives = 146/439 (33%), Gaps = 43/439 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   IR E  + G  E+ 
Sbjct: 312 EEAAKRDHRKIGKEQELF--FFHELSPGSCFFQPRGAYIYNTLVEFIRSEYRKRGFQEVV 369

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +  LW  SG +  Y + M    D   +     P +      IF    +S+R LP 
Sbjct: 370 TPNIYNNKLWQTSGHWLHYAENMFSF-DVEKETFALKPMNCPGHCMIFDVRNRSWRELPL 428

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+E+     G+ R R F   DA+ F    +               ++   G
Sbjct: 429 RMADFGVLHRNEMSGALTGLTRVRRFQQDDAHIFCSVDQIKDEMI-GALEFLKHVYSVFG 487

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                    + P       E    A+                  +     D       I 
Sbjct: 488 FTFNLC-LSTRPEKYLGDLEMWNQAEK-----------------ALAESLDAFGEQWKIN 529

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
            +  A Y    D+    + D+L    + +   ++    F    ++    + ++    G+ 
Sbjct: 530 PEDGAFYGPKIDI---TIMDALKRAHQCATIQLD----FQLPIRF----NLSYVNEAGEK 578

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +    +G++  + A++    +     WP  ++P ++ +I +        D   ++
Sbjct: 579 TRPVIIHRAILGSVERMIAILT---ESYAGKWPFWLSPRQVMVIPV---SSQFDDYAIQV 632

Query: 369 YARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             +L   G     D D  + +  +   A L  F   ++VG K ++   V ++ R   +  
Sbjct: 633 KDKLWNDGFMAELDTDPSDTLNKKIRNAQLAQFNFILVVGEKELNAGTVNVRTRDNVVHG 692

Query: 428 DMSLEEVINYASHRFSNNR 446
           ++ +++++      F   +
Sbjct: 693 EILVDDLLKKFR-IFKERK 710


>gi|305433094|ref|ZP_07402250.1| proline--tRNA ligase [Campylobacter coli JV20]
 gi|304443795|gb|EFM36452.1| proline--tRNA ligase [Campylobacter coli JV20]
          Length = 569

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 112/271 (41%), Positives = 159/271 (58%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MKFSKLYAPSLKEAPKDATLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAAV-- 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +     E+  A YA+     N K  DSL
Sbjct: 239 -RANKTCDEERPEANYASKFHTPNIKTIDSL 268



 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 105/224 (46%), Gaps = 6/224 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++D  +  E          +  +              D+   K  D   +   K   +
Sbjct: 347 DFYLDKELEGEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLAEVKENDCCAKCGAKLKLS 406

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD KG I
Sbjct: 407 KGIEVGHIFKLGQKYSKAMNANFLDENGKSKPFYMGCYGIGVSRLLAVAIEANHDEKGCI 466

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  LS  G +V  DD  E+ G +    +L+G
Sbjct: 467 WNKTLAPFTLEIIISNIKDEKSLEFATKLYEDLSNAGIEVLLDDRNERFGVKMNDFELMG 526

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           FP  ++VG K +   ++E   R T  ++ +S +EV ++      
Sbjct: 527 FPYALVVG-KGLEKDELEFIDRKTLEKKIISSKEVFDFIKKSVE 569


>gi|311739567|ref|ZP_07713402.1| threonine--tRNA ligase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305383|gb|EFQ81451.1| threonine--tRNA ligase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 687

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 60/448 (13%), Positives = 134/448 (29%), Gaps = 47/448 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L +    +   G   + P G      +    R    + G   ++
Sbjct: 260 EEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPNGATVRMEMENHSRNRHVQAGYSFVN 318

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRND------------KAMIYGPTHEEVMTDIF 118
            P +   DL+ +SG  D Y   M      +             +     P +  +   IF
Sbjct: 319 TPHITKGDLFKKSGHLDFYADGMFPPMQLDGEYDEEGNTVKEPQDYYAKPMNCPMHNLIF 378

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            S  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +  +     +
Sbjct: 379 ASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTEEQLEEELTK-V 437

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               + +    GL    +   +                    +   S +  +       +
Sbjct: 438 LDFIISLLKDYGLSDFYLELST----------------KDPNKFVGSDEIWERSTSILQS 481

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +             A Y       + +  D++    ++S   ++    F    ++ L 
Sbjct: 482 VAEKSGLELVPDPAGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLPERFELE 534

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +A+      K   + +     G++     V+   + G    W        I +      
Sbjct: 535 YTAS---DGTKKRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVVGIPVA----- 586

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   E++ A+L + G     D   +++  +         P  ++ G++ V    V 
Sbjct: 587 -DEFSPHLEEVAAQLRQKGIRADVDTSDDRMQKKIRNHTTGKVPFMLVAGARDVEADAVS 645

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            +         + ++E +   +   +  
Sbjct: 646 FRFLDGTQVNGVPVKEAVELIAAWVAER 673


>gi|219113513|ref|XP_002186340.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583190|gb|ACI65810.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 766

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 80/439 (18%), Positives = 158/439 (35%), Gaps = 37/439 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD    + K  L   M H  S G   WLP G +  + +   I+      G  E+ 
Sbjct: 362 EKAKERDHRRIAAKQDL--IMFHDLSAGSAFWLPHGARIYNKLIDFIKSHYWNRGYDEII 419

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + + DLW +SG    Y   M    D   +     P +      +F + I+SYR+LP 
Sbjct: 420 TPNIYNLDLWHKSGHALHYKDAMF-CFDVEGQEWAMKPMNCPGHCLMFANSIRSYRDLPL 478

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F    +  R+EL     G+ R R F   DA+ +    +  K   + +  ++++  +   
Sbjct: 479 RFADFGVLHRNELSGALTGLTRVRRFQQDDAHIYCREDQIEKEVVDAL--NFMKDVYDTF 536

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL--NS 247
             +  +   + P                  +        +    +     D         
Sbjct: 537 GMTYKLELSTRP-----------------QKALGDVALWERAEEALANAMDMFAGKGGWR 579

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           +     A Y    D+   K+ D++    + +   ++      F  +Y+   +A+ +    
Sbjct: 580 VNPGDGAFYGPKIDI---KVMDAMDRVHQCATVQLDFQLPIRFDLQYT---TASKEEGQQ 633

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               V +    +G++  + AV+    +  G  WP  ++P ++ L+ +        D  E 
Sbjct: 634 FARPVMIHRAMLGSVERMFAVL---CEHYGGKWPFWLSPRQVMLVPV---HAEFFDYSED 687

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I A+L   G  V  D        +   A +  +  Q +VG   V++  V I++R   +  
Sbjct: 688 IRAKLHAEGFYVDVDTSKNTFQKKVRNAQVAQYNFQFVVGKAEVANGSVNIRNRENQVEG 747

Query: 428 DMSLEEVINYASHRFSNNR 446
           +  ++E+I         ++
Sbjct: 748 EKKIDEMIAMLKQLREEHK 766


>gi|13882685|gb|AAK47237.1| prolyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
          Length = 578

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 100/258 (38%), Positives = 148/258 (57%), Gaps = 1/258 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ FL  L+++P DAE+ASHKL++R G I   + G+YSWLPLG + L N+  +IR+E N
Sbjct: 1   MSELFLRTLRDDPADAEVASHKLLIRAGYIRPVAPGLYSWLPLGLRVLRNIERVIRDEMN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P L     +  + R+  YG  + RL DR     + GPTHEE+ T   +   
Sbjct: 61  AIGGQEILFPALLPRAPYETTNRWTQYGDSVFRLKDRRGNDYLLGPTHEELFTLTVKGEY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++ P T YQIQ K+RDE RPR G++R+REF+MKD+YSFD+   G K +Y+    +Y 
Sbjct: 121 SSYKDFPLTLYQIQTKYRDEARPRAGILRAREFVMKDSYSFDIDAAGLKAAYHAHREAYQ 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFDD 241
           RIF RL ++ + + A SG +GG  S EF+  + +GE   V C +      + +  T   D
Sbjct: 181 RIFDRLQVRYVIVSAVSGAMGGSASEEFLAESPSGEDAFVRCLESGYAANVEAVVTARPD 240

Query: 242 IISLNSIVEQWTAPYAAT 259
            + ++ + E        T
Sbjct: 241 TLPIDGLPEAVVHDTGDT 258



 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 93/174 (53%), Gaps = 4/174 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     V ARGIE+GHIF  G+KY+   +A   G DGK   + MG
Sbjct: 391 GTIEAAEVREGDPSPDGAGPLVMARGIEIGHIFQLGSKYTDAFTADVLGEDGKPVRLTMG 450

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA V E  HD  G+ WP +VAPF + L  I   D   R     + A L ++
Sbjct: 451 SYGIGVSRLVAVVAEQHHDELGLRWPSTVAPFDVHL-VIANKDAQARAGATALAADLDRL 509

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           G +V  DD     G +F  A+LLG P  V+VG +  +D  VE++ R +G   ++
Sbjct: 510 GVEVLLDDRQASPGVKFKDAELLGMPWIVVVG-RGWADGVVELRDRFSGQTREL 562


>gi|197122302|ref|YP_002134253.1| threonyl-tRNA synthetase [Anaeromyxobacter sp. K]
 gi|238689843|sp|B4UAM8|SYT_ANASK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|196172151|gb|ACG73124.1| threonyl-tRNA synthetase [Anaeromyxobacter sp. K]
          Length = 650

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 136/446 (30%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L T   H+ + G   WLP G    + +   +R    + G 
Sbjct: 238 LAKLEEVKKRDHRRLGPQLGLFT--FHEFAPGAPFWLPAGTVLYNVLEDAMRRLVLKNGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---------RNDKAMIYGPTHEEVMTDI 117
            E+  P L +  LW  SG +  Y + M  + D          +  +    P +      I
Sbjct: 296 QEVKTPLLFNKRLWETSGHWGKYRENMFLVVDSESDPALPLEDRCSFSLKPMNCPSHHLI 355

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +R   +SYR LP  ++      R+E      G+ R R+F   DA+ +    + +     +
Sbjct: 356 YRMDKRSYRELPVRYFTTDALHRNEASGSLGGLTRVRQFEQDDAHIYLREEQVTDE-VLR 414

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +F     ++   GL                   F     T   Q        D       
Sbjct: 415 IFELMKVVYGAFGLG------------------FEATFSTRPEQRIGDDALWDRAEALLR 456

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              D      ++     A Y    D+    + DSL    +     ++             
Sbjct: 457 KSLDATGLKWTLNAGDGAFYGPKIDML---VTDSLGRKWQTCTIQLDYAAP--------E 505

Query: 297 PMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               TF G D K+H    +     G+     A++   + G    W             + 
Sbjct: 506 RFDLTFVGEDNKEHRPVVIHRAIYGSFERFVAILVEHYAGAFPAW------LAPVQARVV 559

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                      +    L   G  V  D   +++G++   A L   P  ++VG K V    
Sbjct: 560 TVSDRFEAWAREAGEALQARGWRVEVDASSDKLGAKIRNAQLAKIPFTLVVGEKEVEAKG 619

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V  +       + M LE      +  
Sbjct: 620 VSPRRHGGEDLKTMPLEAFAELMTRE 645


>gi|322434762|ref|YP_004216974.1| prolyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
 gi|321162489|gb|ADW68194.1| prolyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
          Length = 612

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 121/312 (38%), Positives = 168/312 (53%), Gaps = 9/312 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+P L+E P DAE+ASHKL+LR G + Q   GIYS+L LGQ++++ + AIIR+E 
Sbjct: 3   RWSKLFIPTLREAPSDAEVASHKLLLRAGYVRQLGAGIYSYLFLGQRSVNKIVAIIRQEM 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E  +PT+   ++W ESGR+   G  M RL DR    +  G THEEVMT I RS 
Sbjct: 63  DTIG-QEFLLPTIHPREVWEESGRWTGMGDNMFRLKDRKGAELCLGMTHEEVMTTIARSE 121

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SY+ LP  +YQIQ KFRDE RP+ G++R R+F+MKD+YSFD+   G   SYN    +Y
Sbjct: 122 LRSYKQLPQIWYQIQTKFRDEPRPKSGLLRVRQFIMKDSYSFDIDEAGLDLSYNLHDAAY 181

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF R GL+ + + A+SG +GG  S EF+V  D GE  +  S       +    +    
Sbjct: 182 RRIFDRCGLEYVAVEADSGAMGGSQSQEFMVYTDAGEDLIASSTSGYAANLEKATSALTP 241

Query: 242 IISLNSIVEQ-----WTAPYAATSDVHNEKLFDSLPENKRVSA---RGIEVGHIFYFGTK 293
           +I L    +       T    A SDV       +  + K V+    R  + G        
Sbjct: 242 VIDLEPTGDGLPELVLTPGLGAISDVTAFFGIHASQDIKCVAFMGTRTAQPGTTEPLRPV 301

Query: 294 YSLPMSATFKGA 305
            +      F   
Sbjct: 302 VAFLRGDHFVNE 313



 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/183 (32%), Positives = 85/183 (46%), Gaps = 4/183 (2%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E   D +        + +E+GHIF  G KYS  M AT    DGK+    MGSYGIG  R+
Sbjct: 431 EGELDPIGNLPLRLGKAVEIGHIFKLGYKYSKSMGATVLNRDGKEVTPIMGSYGIGVERI 490

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFW 381
           + A IE+S    G       A      + +      +    +A EKI A L+  G DV  
Sbjct: 491 LTAAIETSAAKNGGEAYALPASIAPFQVIVTVTNIKEPALVEAGEKIAADLAAAGLDVLL 550

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  E+ G +F  ADL G P ++ VG K +S+ +VE+  RL     D+ +E  +    + 
Sbjct: 551 DDRDERAGVKFKDADLTGVPYRIAVGKK-LSEGQVELLDRLQNQTLDIPVEAAVQTLRNL 609

Query: 442 FSN 444
              
Sbjct: 610 LGK 612


>gi|256384406|gb|ACU78976.1| threonine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385238|gb|ACU79807.1| threonine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455488|gb|ADH21723.1| threonine--tRNA ligase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 639

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 157/436 (36%), Gaps = 37/436 (8%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD  + +  L +  G       G+  WLP G    + +   +R+++     I +  P + 
Sbjct: 236 RDHRLINKTLNIF-GFDQLVGAGLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETPPIG 294

Query: 76  SADLWVESGRYDSYGKEMLRLADR---NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           + +L+  SG +D YG++M +  +    +D+  I  P +      +++   +SYR+LP   
Sbjct: 295 TVELYKTSGHWDHYGEDMFQPFNGGKGSDEQFILRPMNCPHHIAVYKQEQRSYRDLPLRI 354

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +  ++ R E      G+ R R   + D++ F  + +                  R   K
Sbjct: 355 CEHAIQHRFESSGSLTGLERVRGMKLTDSHIFVRSDQIEDEF-------------RSTYK 401

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIISLNSIVE 250
            I    ++  I  D     + L D  +   F   D   D    S      D+        
Sbjct: 402 LISEVLKTFNIQIDYLS--LSLRDPNDKVKFYKDDLMWDKAESSLEKVLIDLGLKYEKRI 459

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+   ++  +      VS   ++      F          T+   D K  
Sbjct: 460 GDAAFYGPKLDI---QIKTAQNHEITVSTIQLDFLMPNKFD--------LTYIDKDQKLV 508

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              M     G +      I +  +    +    +AP ++ +I I    +   +    I+ 
Sbjct: 509 RPIMIHR--GLIGTYERFIATLLEQTKGVLSLWLAPKQVEIIPI---SESNLEYANLIHQ 563

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L K       D   E++  +   A     P Q+++G+K V ++ +  +   +  +  + 
Sbjct: 564 KLKKEFIRSHIDLRDERLSYKIRDAQTKKVPYQLVLGNKEVENNTITYRQYGSDAQITVP 623

Query: 431 LEEVINYASHRFSNNR 446
           ++E I+    + ++ +
Sbjct: 624 IQEFIDMLKQQINDKK 639


>gi|33866303|ref|NP_897862.1| prolyl-tRNA synthetase [Synechococcus sp. WH 8102]
 gi|81835080|sp|Q7U5D6|SYP_SYNPX RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33639278|emb|CAE08286.1| Prolyl-tRNA synthetase [Synechococcus sp. WH 8102]
          Length = 593

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 109/244 (44%), Positives = 147/244 (60%), Gaps = 3/244 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +AEI SH+L+LR G I +   GIY++LP+  K L  +  IIREE
Sbjct: 1   MRVSRLMLVTLRDVPAEAEITSHQLLLRGGFIRRVGSGIYAYLPMMWKVLQRITTIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            NR GA+E  +P L  ++LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MNRAGALETLLPQLHPSELWQRSGRWQGYTAGEGIMFHLEDRQGRELGLGPTHEEVITSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSF       + +Y  M
Sbjct: 121 AGELLRSYRQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEADLQATYAVM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y RIF R GL+++P+ A+SG IGG  S EF+V A+ GE  +  S D        +  
Sbjct: 181 DQAYRRIFERCGLEAVPVDADSGAIGGAASQEFMVTAEAGEDLILISDDGAYAANQEKAV 240

Query: 238 DFDD 241
              D
Sbjct: 241 SIPD 244



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 59/172 (34%), Positives = 88/172 (51%), Gaps = 1/172 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P+ +    RGIEVGHIF  G KYS  +   F   +G+D    MG YGIG  R+  A +E 
Sbjct: 422 PDARLQEKRGIEVGHIFQLGRKYSQALDCCFTNENGRDEPFWMGCYGIGVSRLAQAAVEQ 481

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            HD  GI WP ++AP+++ ++    HD    D  + +YA L + G DV  DD  E+ G +
Sbjct: 482 HHDDGGIRWPAAIAPYEVIVVIANNHDDAQTDLGDTVYATLLEAGIDVLLDDRKERAGVK 541

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F  ADL+G P ++++G +  ++  VE+  R       +   E I        
Sbjct: 542 FKDADLIGIPWRLVIG-RDAAEGTVELVQRSNREMRKLPHGEAIGELLKALR 592


>gi|315586098|gb|ADU40479.1| threonine--tRNA ligase [Helicobacter pylori 35A]
 gi|317179509|dbj|BAJ57297.1| threonyl-tRNA synthetase [Helicobacter pylori F30]
          Length = 612

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 151/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F                + L  
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCS-----FEQIQSEVSAILDF 379

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                         +  I       + +   T   +        +    +      +   
Sbjct: 380 --------------THKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATNALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 EHNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHA 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|126313772|ref|XP_001370758.1| PREDICTED: similar to Threonyl-tRNA synthetase-like 1 [Monodelphis
           domestica]
          Length = 717

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 141/458 (30%), Gaps = 57/458 (12%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
              +   RD         L     H+ S G   +LP G +  + +   IR+E  R G  E
Sbjct: 292 QREEAAARDHRRIGKDQELF--FFHELSPGSCFFLPRGTRVYNALMTFIRDEYARRGFSE 349

Query: 69  MSVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKAMIYGPTHEE 112
           +  PTL S  LW +SG +  Y  +M                    +     +   P +  
Sbjct: 350 VRTPTLFSTKLWEQSGHWKHYSGDMFVLRPPDPDGPADCQNNCSTNHPQSMLALKPMNCP 409

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSK 171
               IF    +S+R LP          R E      G+ R R F   DA+ F    +   
Sbjct: 410 AHCLIFAHRPRSWRELPLRLADFGALHRTEASGGLGGLTRLRRFQQDDAHIFCAQDQLES 469

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                       ++   G                    F ++  T  +         D  
Sbjct: 470 E-IRGCLDFLRSVYTVFGFS------------------FHLVLSTRPSSFLGESFLWDQA 510

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                   D+      +     A Y    DVH   + D+L    +     ++    F   
Sbjct: 511 EQILQQALDEFGEPWDLNPGDGAFYGPKIDVH---IQDALGRPHQCGTIQLD----FQLP 563

Query: 292 TKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++       + G  G  +  V +    +G++  +  V+    +  G  WP  ++P +  
Sbjct: 564 LRF----GLQYMGQAGVLERPVLIHRAVLGSVERMLGVLT---ENYGGKWPLWLSPLQAM 616

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSK 409
           +I + A  +       ++   L   G     D D    +  +   A L  +  Q +VG +
Sbjct: 617 VIPVGAEQEG---YAREVQEALQAAGLAGDLDKDPSLTLSRRVRRAQLSQYNFQFVVGPR 673

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
             S   V I+ R +G   +  + E +           P
Sbjct: 674 EQSRGTVNIRTRDSGQLGERPVAEAVVRLRELRDARVP 711


>gi|315604309|ref|ZP_07879375.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314015|gb|EFU62066.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 677

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 71/451 (15%), Positives = 140/451 (31%), Gaps = 44/451 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L +    +   G+  + P G      + + + +   R G   
Sbjct: 245 RIKEAERRDHRRLGVELDLFS-FPEEIGPGLVVFHPKGGILRHEIESYVTDRHKRAGFDF 303

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEVMTD 116
           +  P +    L+  SG    Y   M                 +  +       +  +   
Sbjct: 304 VHTPEISKGGLFHTSGHLPYYADTMFPPMLVDEERDADGNVTKAGQEYYLKAMNCPMHNL 363

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP  FY++   +R E      G+ R R F   D++++    + S+    
Sbjct: 364 IFRSRGRSYRELPLRFYELGHDYRYEKSGVVHGLTRMRGFTQDDSHTYCTPEQASQE-IR 422

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                +L I    GLK   +   +    G    +FI   +                  + 
Sbjct: 423 TQIEFFLSILSAFGLKDFYLELSTRDEDGKKKDKFIGSDED-----------WAAATKAL 471

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                             A Y       + ++ D++    ++S    +            
Sbjct: 472 QDACAATGLDLVPDPGGAAFYGPKV---SVQVKDAIGRTWQMSTIQYDFNQP-------- 520

Query: 296 LPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +  ADG       + S  +G++     V+    +     +P  ++P ++ LI +
Sbjct: 521 ERFDLEYTAADGTRQRPVMIHSAKLGSVERFIGVLT---EHYAGAFPAWLSPVQVRLIPV 577

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +        + A+L + G  V  D   ++ G +   A     P  +I G + V   
Sbjct: 578 A---EAFDGYVADVAAKLRERGVRVETDLSDDRFGKKIRNASKDKIPFTLIAGGEDVEAG 634

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V  + R       + +E  ++         
Sbjct: 635 AVSFRLRDGSQHNGVPVERAVDLIVAHVEER 665


>gi|323339428|ref|ZP_08079710.1| proline--tRNA ligase [Lactobacillus ruminis ATCC 25644]
 gi|323093139|gb|EFZ35729.1| proline--tRNA ligase [Lactobacillus ruminis ATCC 25644]
          Length = 572

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 113/278 (40%), Positives = 158/278 (56%), Gaps = 5/278 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE  SH+LMLR G I Q + G+Y++LPL  + L N+ AIIREE
Sbjct: 1   MKQSKLLIPTLKEVPSDAEAISHQLMLRGGYIKQITAGMYAYLPLAYRVLRNIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A EM VP    A+LW ++GRY++YG  + +  DR+++  I GPTHEE  T I R 
Sbjct: 61  MENIDAAEMLVPAALPAELWQQTGRYETYGPNLFKFQDRHERDFILGPTHEETFTTIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +K+Y+ LP T YQIQ K+RDE RPRFG++R REF+MKDAYSF    E    ++  M  +
Sbjct: 121 AVKTYKKLPITLYQIQTKYRDENRPRFGLLRGREFIMKDAYSFHAEEESLDKTFRDMDSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----N 236
           Y  +F+R+GL    +  ++G +GG+ S EF+ +A  GE  V  S    D+    E     
Sbjct: 181 YTNVFNRVGLNFRSIIGDAGAMGGNNSKEFMAIAPIGEDTVVYSD-ESDYAANLEMAQNK 239

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                       +++   P A T D   E L  S    
Sbjct: 240 RTMPKSHETLGELQKVATPGAKTIDEVAEFLGSSADRE 277



 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 2/228 (0%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKR 276
           E ++    D  +    S   + D    LN+ +   ++  + A      E       + + 
Sbjct: 341 EIEILADLDVENMANASVGANEDGFHYLNANLGRDFSVTHFADLRTVQEGEISPDGKGRL 400

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RGIE+GHIF  GT+YS  + A     +G+   + MG YGIG  R+++A++E   D  
Sbjct: 401 KFTRGIEIGHIFKLGTRYSKDLDAVVLDENGRQLPIIMGCYGIGVSRLLSAIVEQHSDEN 460

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           GI+WP S+APF + +I +    +   +  EK+   L   G  V  DD  E+ G +FA +D
Sbjct: 461 GIVWPRSIAPFDVHVIPVNVKKEEQVELSEKVTELLENAGYKVLVDDRKERPGVKFADSD 520

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           L+G P ++ VG K  ++  VEIK R TG   ++ L+E++N        
Sbjct: 521 LIGIPARITVGKK-AAEGIVEIKLRRTGETLEVKLDELLNSLQILLKE 567


>gi|227504970|ref|ZP_03935019.1| threonyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
 gi|227198420|gb|EEI78468.1| threonyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
          Length = 687

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 64/455 (14%), Positives = 136/455 (29%), Gaps = 48/455 (10%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +  ++ +   RD      +L L +    +   G   + P G      +    R    +
Sbjct: 253 EAYQHMIAEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPNGAVVRMEMEEHSRRRHIQ 311

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND------------KAMIYGPTHE 111
            G   +S P L   DL+ +SG  D Y   M      +             +     P + 
Sbjct: 312 DGYSFVSTPHLTKGDLFKKSGHLDFYADGMFPPMQLDGEYDEDGNCTKQPQDYYAKPMNC 371

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF S  +SYR LP   ++    +R E      G+ R+R F   D++ +    +  
Sbjct: 372 PMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDSHIYCTPEQLE 431

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    + +    GL    +   +                    +   S +  + 
Sbjct: 432 DELTK-VLDFIISLLKDYGLDDFYLELST----------------KDPNKYVGSDEIWER 474

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                 +  +             A Y       + +  D++    ++S   ++    F  
Sbjct: 475 STSILQSVAEKSGLELVPDPAGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNL 527

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++ L  +A+      K   + +     G++     V+   + G    W        I 
Sbjct: 528 PERFELEYTAS---DGTKQRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVVGIP 584

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +              E I A+L K G     D   +++  +         P  ++ G + 
Sbjct: 585 VA------DEFSPHLEAIAAKLRKRGIRADVDTSDDRMQKKIRNHTTGKVPFMLLAGERD 638

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  + V  +         + ++E I   +   +  
Sbjct: 639 VDANAVSFRFLDGSQVNGVPVDEAIELIAAWVAER 673


>gi|114659241|ref|XP_001144153.1| PREDICTED: hypothetical protein [Pan troglodytes]
 gi|332844841|ref|XP_001144319.2| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic isoform
           1 [Pan troglodytes]
          Length = 707

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 150/447 (33%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 290 KMMRDWEKFQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLTDFIREE 347

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y + M       D      P +      +F  
Sbjct: 348 YHKRDFTEVLSPNMYNSKLWEASGHWQHYSENMFTFEIEKDT-FALKPMNCPGHCLMFAH 406

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 407 RPRSWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLR 465

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  +          
Sbjct: 466 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEIEMWNEAEKQLQNSL 507

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 508 MDFGEPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 560

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 561 SK--DGDDKKRPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP--- 612

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C     ++ +   + G     D D    +  +   A L  +   ++VG K   D+ V +
Sbjct: 613 TCEKYALQVSSEFFEEGFMADVDLDHNCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNV 672

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   I  ++ +   I+   +     
Sbjct: 673 RTRDNKIHGEILVTSAIDKLKNLKKTR 699


>gi|311742315|ref|ZP_07716124.1| threonine--tRNA ligase [Aeromicrobium marinum DSM 15272]
 gi|311313943|gb|EFQ83851.1| threonine--tRNA ligase [Aeromicrobium marinum DSM 15272]
          Length = 661

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 140/444 (31%), Gaps = 33/444 (7%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              I +   RD      +L L +    +   G+  + P G      +   +R      G 
Sbjct: 249 LFRIEEAQRRDHRRLGTELDLFS-FPDEIGSGLPVFHPRGGVIKREMEDYVRRRHIEEGF 307

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
             +  P +    L+  SG    YG+ M    D +         +  +   IFRS  +SYR
Sbjct: 308 EYVGTPHIAKEGLFHTSGHLPYYGEGMFPALDVDGSDYRLKAMNCPMHNLIFRSRGRSYR 367

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP  F++    +R+E      G+ R R F   D++S+    +        +    L + 
Sbjct: 368 ELPLRFFEFGHVYRNEKSGVIHGLTRVRGFAQDDSHSYVTPEQAPGE-IRHLLQFVLSLL 426

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL    +   +               D  + +   S +              +    
Sbjct: 427 RDFGLDDFYLELSTR--------------DASKDKFIGSDEDWATATKVLEDVCLESGLE 472

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                   A Y       + +  D++  + ++S    +      F        +  +  A
Sbjct: 473 LVPDPGGAAYYGPKV---SVQARDAIGRSWQMSTIQYD------FNQPSPERFNLEYVAA 523

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG       + S   G++     V+    +     +P  +AP ++  I +    +   D 
Sbjct: 524 DGSRRQPVMIHSAKFGSIERFMGVLV---EHYAGAFPPWLAPVQVVGIPVA---ERHADY 577

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              + ARL  +G     D   E++  +   A     P  ++ G   +    V  ++R   
Sbjct: 578 LVNLTARLRALGIRAEVDHSDERMQKKIRNAQTQKVPFMLLAGDNDIDGGAVSFRYRNGE 637

Query: 425 IREDMSLEEVINYASHRFSNNRPV 448
               ++L+E I        +   V
Sbjct: 638 QDNGVALDEAIERIVAAVRDRVQV 661


>gi|319760426|ref|YP_004124364.1| prolyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039140|gb|ADV33690.1| prolyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
          Length = 595

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 95/215 (44%), Positives = 145/215 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  L+E P++ E  SH+LMLR+GMI Q S G+Y+WLP+G + L  V  I+R+E
Sbjct: 1   MRATQYLLTTLKEIPKNCETISHQLMLRSGMIRQISTGLYTWLPIGLRVLRKVENIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N    IE+S+P +Q A+LW +SGR+  YG E+LR  +R ++  + GPTHEE+++++   
Sbjct: 61  MNNISFIEISMPIIQPANLWKQSGRWSEYGPELLRFKNRVNQEFVLGPTHEEMISNLICK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+  P   YQ+  K+RDE+RPRFG++R++EF MKD YSF    +  +++YN ++  
Sbjct: 121 EIISYKQFPIKLYQMNTKYRDEIRPRFGLIRAKEFTMKDGYSFHTNNKCLQNTYNNIYHQ 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           Y  IF+R+GL    ++A++G  GG LSHEF    +
Sbjct: 181 YHTIFNRIGLNFHVVQADTGNTGGTLSHEFQAYPE 215



 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/163 (35%), Positives = 95/163 (58%), Gaps = 2/163 (1%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IE+GHIF  G KYS  + +  +  +  +  + MG YGIG  R++  +IE ++D  GIIWP
Sbjct: 430 IEIGHIFQLGDKYSRSIYSCIQKYNKFNIKIIMGCYGIGITRIIPTIIEQNYDQYGIIWP 489

Query: 342 DSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADLLG 399
           DS+APFK+++I I  H  V  R+  E++Y +   + G DVF  D  E  G  FA  DL+G
Sbjct: 490 DSIAPFKLAIIPINMHVSVNVRNTTEELYTQFKSIIGSDVFIYDRKENPGIMFADIDLIG 549

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            P  +++  + +++ +VE KHR T     + L+ ++ +  ++ 
Sbjct: 550 IPHILVISDRNLNNQEVEYKHRKTRTTTKIKLDVILQFLINKL 592


>gi|258653602|ref|YP_003202758.1| threonyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
 gi|258556827|gb|ACV79769.1| threonyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
          Length = 699

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 65/449 (14%), Positives = 125/449 (27%), Gaps = 49/449 (10%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R +    G   +  
Sbjct: 261 EAERRDHRKLGVELDLFS-FPDELGSGLPVFHPKGGIIRKELEDYSRAKHIAAGYSFVYT 319

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDIFR 119
           P +  A L+  SG  D Y   M                 +  +     P +  +   IFR
Sbjct: 320 PHITKAKLYEISGHLDWYADGMFPAMHLDAELGPDGEVRKPGQDYYLKPMNCPMHDLIFR 379

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP   ++    +R E      G+ R R     DA+ F    +        + 
Sbjct: 380 SRGRSYRELPLRMFEFGAVYRYEKSGVIHGLTRVRGMTQDDAHIFCTREQMRDEL-TSLL 438

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    GL    +   +                  E +   + +       +    
Sbjct: 439 RFVLELLADYGLDDYYLELSTR----------------NEDKYVGTDENWAVATETLAEV 482

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             +            A Y       + +  D+L    ++S   ++    F    ++    
Sbjct: 483 ARESGLDLVDDPGGAAFYGPKI---SVQARDALGRTWQMSTIQLD----FNLPERF---- 531

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + G DG       +     G++     V+   + G    W   V    I +      
Sbjct: 532 ELEYTGPDGSKQRPVMIHRALFGSVERFFGVLTEHYAGAFPAWLSPVQVVGIPVA----- 586

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  + +  +L   G     D   +++  +         P  ++ G K V+   V 
Sbjct: 587 -DAFGDYLQDVVDQLVARGIRAEADHSDDRMQKKIRTHTTAKVPFLLLAGEKDVAAGAVS 645

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNR 446
            + R       +     +          R
Sbjct: 646 FRFRDGTQINGVPAAAAVQAIVDWVGQRR 674


>gi|169629982|ref|YP_001703631.1| threonyl-tRNA synthetase [Mycobacterium abscessus ATCC 19977]
 gi|238688903|sp|B1MCK6|SYT_MYCA9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169241949|emb|CAM62977.1| Threonyl-tRNA synthetase [Mycobacterium abscessus]
          Length = 684

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 64/453 (14%), Positives = 131/453 (28%), Gaps = 50/453 (11%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E  R D      +L L +    +   G+  + P G      +    R +    G 
Sbjct: 251 LELLEEAQRRDHRKLGVELDLFS-FPDEIGSGLPVFHPKGGIVRKELEDYSRAKHTAAGY 309

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVM 114
             ++ P +   +L+  SG  D Y   M                 +  +     P +  + 
Sbjct: 310 EFVNTPHITKENLYQTSGHLDWYSDGMFPPMHIDAELNEDGTVRKPGQNYYLKPMNCPMH 369

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHS 173
             I+R+  +SYR LP   ++    +R E      G+ R R     DA+ +    +  +  
Sbjct: 370 HLIYRARGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYTTREQMHEEL 429

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
              +    L +    GL    +   +                  E +   S +  +    
Sbjct: 430 -TSLLRFVLDLLSDYGLDDFYLELST----------------KDEAKFVGSDEVWEEATK 472

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           +      D            A Y       + +  D+L  + ++S   ++          
Sbjct: 473 TLEQVALDSGLQLVPDPGGAAFYGPKI---SVQAKDALGRSWQMSTIQLDFNMP------ 523

Query: 294 YSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
                +  +  ADG       +     G++     V+   + G    W   V    I + 
Sbjct: 524 --ERFNLEYTAADGTRKQPVLIHRALFGSIERFFGVLTEHYAGAFPAWLSPVQAVGIPIA 581

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                          I ++L   G     D   +++  +         P  ++ G + V 
Sbjct: 582 ------DAHAPYLNDIVSQLKAQGIRAEVDSSDDRMNKKIVNHTNQRVPFLLLAGDRDVE 635

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              V  + R       +  +E +       +  
Sbjct: 636 AGAVSFRFRDRTQVNGVPRDEAVAAIVDWVNRR 668


>gi|317181405|dbj|BAJ59189.1| threonyl-tRNA synthetase [Helicobacter pylori F57]
          Length = 612

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 151/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F                + L  
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCS-----FEQIQSEVSAILDF 379

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                         +  I       + +   T   +        +    +      +   
Sbjct: 380 --------------THKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATNALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 EHNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHA 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|255322659|ref|ZP_05363803.1| prolyl-tRNA synthetase [Campylobacter showae RM3277]
 gi|255300220|gb|EET79493.1| prolyl-tRNA synthetase [Campylobacter showae RM3277]
          Length = 570

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 110/256 (42%), Positives = 155/256 (60%), Gaps = 1/256 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P  +E P+DA +ASHK +LR G   Q   G+Y++LPLG++ L+N+  I++EE
Sbjct: 1   MKFSKLYAPTAKEAPKDASLASHKFLLRAGYAEQVGSGLYNFLPLGKRVLENIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+S+  + SADLW ESGR+D YGKE+LR  DR +   +  PT+EE +  + R 
Sbjct: 61  LDEAGAQEISMSFVTSADLWRESGRFDVYGKELLRFKDRKENDFVLSPTNEESVVALVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG++R REFLMKD YSF    E     ++ M  +
Sbjct: 121 KVTSYKQLPLNLYQINTKFRDEARPRFGLLRGREFLMKDGYSFHANAEDLDREFDLMEKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RLGL    +RA+SG IGG  S EF+VLA++GE  +   ++  D+    E     
Sbjct: 181 YSKIFTRLGLNFRAVRADSGAIGGSGSKEFMVLANSGEDDIIVCENC-DYAANIEAATRA 239

Query: 241 DIISLNSIVEQWTAPY 256
              +     E   A +
Sbjct: 240 KRTTQAERPEADAAKF 255



 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/183 (38%), Positives = 97/183 (53%), Gaps = 3/183 (1%)

Query: 261 DVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   K  D  P        ++GIEVGHIF  GTKYS PM ATF   +GK     MG YG
Sbjct: 389 DLTAVKAGDKCPCCGGNLSVSKGIEVGHIFKLGTKYSEPMGATFLDENGKAKPFIMGCYG 448

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+VA  +E+SHD KGIIW +++APFK  +I     D+      + +Y  L   G  
Sbjct: 449 IGVSRLVAVAVEASHDEKGIIWNETLAPFKFEIIVSNLKDEEGVKFAQGLYEDLRGAGVS 508

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G + +  +L+GFP  VIVG K +++  VE+  R    +E +   E++   
Sbjct: 509 VLLDDRNERFGVKMSEFELMGFPYAVIVG-KGLAEGTVELVTRDGLAKETVKASEILARL 567

Query: 439 SHR 441
              
Sbjct: 568 KSL 570


>gi|329936661|ref|ZP_08286368.1| prolyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
 gi|329303891|gb|EGG47774.1| prolyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
          Length = 564

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 112/272 (41%), Positives = 155/272 (56%), Gaps = 6/272 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  SHKL++R G + ++S GI+SWLPLG+K LDNV+ ++REE 
Sbjct: 6   RMSRLLVKTLRDDPADAETLSHKLLVRAGYVRRNSAGIWSWLPLGKKVLDNVSRVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  S R++ YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGAQEVLLPALLPKEPYEASARWEEYGDLLFRLKDRKGGEYLLGPTHEEIFTLVVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG   SY     +Y
Sbjct: 126 VSSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDTTDEGLAESYRLHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +IF RLGL    + A SG +GG  S EF+  A  GE       +  D+   +E   F  
Sbjct: 186 QKIFARLGLDYRIVSAVSGAMGGSASEEFLAPAAAGEDTFVDCPNC-DYAANTEAVTFAL 244

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                  VE    P A   D  +    +SL E
Sbjct: 245 T-----PVEGAAHPAAEELDTPDTPTIESLAE 271



 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/182 (32%), Positives = 90/182 (49%), Gaps = 6/182 (3%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           DV   +  D  P+        R IE+GHIF  G KY+        G +GK   V MGSYG
Sbjct: 385 DVVVVEEGDPCPKCGTGLKLDRAIEIGHIFQLGRKYADTFQLDVLGQNGKPVRVTMGSYG 444

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R VAA+ E   D +G+ WP  +AP  +    + A   +  +    +  +L+  G  
Sbjct: 445 IGVSRAVAALAEQHADEQGLYWPKEIAPADVH--VVAAGKALQTELALDVSEKLAAAGVR 502

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V  D+  G   G +F  A+L+G P  ++ G +   +  VE+K R TG RE++++EE I  
Sbjct: 503 VLVDERSGVSPGVKFTDAELIGVPQILVAGRRS-GEGVVELKDRRTGEREELTVEEAIAR 561

Query: 438 AS 439
            +
Sbjct: 562 LT 563


>gi|148241975|ref|YP_001227132.1| prolyl-tRNA synthetase [Synechococcus sp. RCC307]
 gi|166980166|sp|A5GSC0|SYP_SYNR3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|147850285|emb|CAK27779.1| Prolyl-tRNA synthetase [Synechococcus sp. RCC307]
          Length = 600

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 121/285 (42%), Positives = 165/285 (57%), Gaps = 9/285 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S   L  L+++P +AEI SHKL+LR G I + + GIY++LPL  + L  V+AI+R+E
Sbjct: 1   MRVSALLLVTLRDDPAEAEIPSHKLLLRGGYIRRVASGIYAYLPLMWRVLRKVSAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  GA+E  +P LQ A+LW  SGR+  Y      M  L DR D+ +  GPTHEEV+T +
Sbjct: 61  MDAAGALETLLPQLQPAELWQRSGRWSGYTAGEGIMFHLQDRQDRELGLGPTHEEVITAL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF  + E     Y  M
Sbjct: 121 AADLLRSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHASAEDLGRGYAAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y RIF R GL+ + ++A+SG IGG  S EF+V A+ GE  +  S D   +    E  
Sbjct: 181 DQAYRRIFSRCGLQVVAVQADSGAIGGSASQEFMVTAEAGEDLILSSADGS-YAANQERA 239

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                 SL +      +  AA  D   +   D+L E +   A  +
Sbjct: 240 -----ESLPAEPVPLQSATAAELDTPGQTSIDALVEAQGWHASQL 279



 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 98/178 (55%), Gaps = 1/178 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P  +  + RGIEVGHIF  G KYS  + ATF    G+D  + MG YGIG  R+  A +E 
Sbjct: 424 PSQQLQARRGIEVGHIFQLGLKYSEALGATFANEQGQDAPLWMGCYGIGVSRLAQAAVEQ 483

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            HD  G++WP  +APF++ ++   + +    +  E +Y +L + G DV  DD  E+ G +
Sbjct: 484 HHDSAGMVWPVPIAPFEVVIVIASSKEAQQVELAEDLYGQLQQAGVDVLLDDRNERAGVK 543

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           F  A+L+G P +++VG +   + +VE+  R +G +++   ++++          R  L
Sbjct: 544 FKDAELIGIPWRLVVG-RGAVNGQVELVERCSGEKQEGPHQDLMAQLLQTLDQQRQGL 600


>gi|91204601|emb|CAJ70829.1| strongly similar to prolyl-tRNA synthetase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 576

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 119/265 (44%), Positives = 163/265 (61%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+  +P L+E+P +AEI SHKLM+R G+I + + G Y++LPLG   L+ V AI+REE
Sbjct: 1   MKWSQTLIPTLKESPSEAEIDSHKLMIRAGLIRRITSGAYAYLPLGTLVLNKVIAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR+GAIE+ +P LQ  DL  ESGR D +G +++   DR+ K  +  PTHEEV+T I ++
Sbjct: 61  MNRSGAIEVFLPALQHLDLLKESGRLDVFGADLITFQDRHGKETVLSPTHEEVITYIVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQIQ KFRDE+RPRFGV+RS+EF+MKDAYSFDL  +G  +SY  M+ +
Sbjct: 121 EINSYKQLPITLYQIQTKFRDEMRPRFGVLRSKEFIMKDAYSFDLDEKGLNNSYQLMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R  L  I   A+SG +GGD SHEF+V +  GE  +   ++              
Sbjct: 181 YCRIFDRCRLDYIIAEADSGAMGGDASHEFMVPSPVGEDILILCRNCGYSANRERAEAAP 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                N  + +    Y        E
Sbjct: 241 LPQQENYSLRKLEEIYTPDKRTIRE 265



 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/194 (36%), Positives = 105/194 (54%), Gaps = 7/194 (3%)

Query: 260 SDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +++      D+ P    V     GIE+GH+F  GTKY+  + A +  ADGK+    MG Y
Sbjct: 380 ANIRYVTQGDNCPHCNHVLEISQGIEIGHVFKLGTKYTSALKAHYLDADGKEKPKVMGCY 439

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-VG 376
           GIG  R++AA+IE SHD  GIIWP S+AP+ + +I +   D +C DA   IY  ++   G
Sbjct: 440 GIGVNRIIAAIIEISHDENGIIWPMSLAPYHVIIIPVNVKDTICMDAARSIYDDMTNMKG 499

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE---- 432
            DV  DD   + G +F  ADL+G P+++I+G K+    ++EIK R +G      +E    
Sbjct: 500 IDVLLDDRDLRPGVKFKDADLIGIPVKIIIGKKYTETKELEIKLRKSGEVFLTHIENTKQ 559

Query: 433 EVINYASHRFSNNR 446
           E+     H     R
Sbjct: 560 ELERILQHLIKTER 573


>gi|224283116|ref|ZP_03646438.1| threonyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140266|ref|ZP_07802459.1| threonyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132776|gb|EFR50393.1| threonyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
          Length = 676

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 60/461 (13%), Positives = 129/461 (27%), Gaps = 54/461 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPEEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEYDADGNITKPGADYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 420

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 421 DEL-TSLLTFVLNLLKDFGLSDFYLELST----------------KDPDKYVGSDEIWEE 463

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +     +             A Y       + +  D++    +VS   ++    F  
Sbjct: 464 ATRTLREVAEASHLDLVADPGGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 516

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++       +   DG           +   R +   IE         +  +   +   
Sbjct: 517 PERF----QLEYIAKDGT------HQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAP 566

Query: 351 LINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  +     V  +    +      L         D   ++ G +   A     P  +IVG
Sbjct: 567 VQVLGV--PVADEFAPHLAGFVKSLEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVG 624

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            + ++++ V  + R       + ++E              V
Sbjct: 625 EEDMNNNAVSFRFRDGSRLNGVPVDEAREKILAVIKKRAQV 665


>gi|308061413|gb|ADO03301.1| threonyl-tRNA synthetase [Helicobacter pylori Cuz20]
          Length = 612

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 152/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQMEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F                + L  
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCS-----FEQIQSEVSAILDF 379

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                         +  I       + +   T   +        +    +      +   
Sbjct: 380 --------------THKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATNALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +  R 
Sbjct: 475 EHNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHRA 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEELKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVGTEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|296454700|ref|YP_003661843.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296184131|gb|ADH01013.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 604

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 107/284 (37%), Positives = 156/284 (54%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE 
Sbjct: 7   RMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREEI 66

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +  
Sbjct: 67  NGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDM 126

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y
Sbjct: 127 YSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTIDEEGMRKAYYDERGAY 186

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
            RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + + +T    
Sbjct: 187 ERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEALSTPELP 246

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +   S      +   P A T D   E+     P       +  +
Sbjct: 247 EIDASATPAASKEATPDAKTIDNMIERANADHPRTDGREWQASD 290



 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 4/207 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLP 297
           ++ +   ++V           +    +  D  P+        RG+E+G +F  G KYS  
Sbjct: 396 ENEVDYYNLVYGRDFKADGVVEAVEVRHGDMSPDGSGPLSFERGVEIGQVFQLGLKYSKA 455

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +       +GK   V MG YGIG  RV+A + E+ HD  G+ W  SV       +     
Sbjct: 456 LDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLAW-PSVIAPAAVHVVATGK 514

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           D V  +  EK+ A L   G +V +DD  +   G +F  A+L+G PL  +VG  +V+D  +
Sbjct: 515 DAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELIGVPLIAVVGRDYVNDGTI 574

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           EI+ R    +  +   E     + RF+
Sbjct: 575 EIRDRNGENKVAVPAAEAAGTLADRFA 601


>gi|308235415|ref|ZP_07666152.1| prolyl-tRNA synthetase [Gardnerella vaginalis ATCC 14018]
 gi|311114822|ref|YP_003986043.1| proline--tRNA ligase [Gardnerella vaginalis ATCC 14019]
 gi|310946316|gb|ADP39020.1| proline--tRNA ligase [Gardnerella vaginalis ATCC 14019]
          Length = 602

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 108/283 (38%), Positives = 157/283 (55%), Gaps = 2/283 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ FL  L+E+P DA++ S KLM R G I + + G+++WLPLG K L+ V AIIREE N
Sbjct: 1   MSQLFLRTLREDPADADVTSAKLMQRAGYIRKSAPGVWTWLPLGLKVLNKVQAIIREEIN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEEV T + +   
Sbjct: 61  GIGAQEVHFPALLPREPYEATNRWEEYGDNIFRLKDRHEADYLLAPTHEEVFTLLVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+M+DAYSF +  +G K +Y +   +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMQDAYSFSIDEDGLKSAYVEERAAYA 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--DFD 240
           RIF RLG+K + + A SGP+GG  S EF+     GE     +     + + +  T    D
Sbjct: 181 RIFDRLGIKYVIVHAVSGPMGGSDSEEFLAPMAIGEDTFALAPSGKAWNVEALTTPEMQD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
              S    +E    P A T +   +   D  P       +  +
Sbjct: 241 VDCSATPKMETLDTPDAKTIEALVKVSNDLHPREDGREWQASD 283



 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 4/208 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLP 297
           +D   + + V           +    +  D  P+        RG+E+G +F  G KYS  
Sbjct: 394 EDGKHVYNAVYGRDFEADGVVEAAQVRDGDMSPDGSGPLSFERGVEIGQVFQLGLKYSKA 453

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +  +    +GK   V MG YGIG  RV+A + E+ HD  G+ WP ++AP ++ ++     
Sbjct: 454 LGLSVLNENGKAVPVWMGCYGIGVSRVIACLAETHHDDAGLAWPMAIAPAQVHVVATG-K 512

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           DQV  DA EK+   LSK G +V +DD      G +F  A+L+G PL  + G   V++  +
Sbjct: 513 DQVAFDAAEKVVEELSKQGIEVIFDDRPKVSPGVKFKDAELVGVPLIAVAGRDTVNNGTI 572

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           EI+ R     E + ++E       R   
Sbjct: 573 EIRDRNGSNVEAIPVDEAAARIVERVRE 600


>gi|109947952|ref|YP_665180.1| threonyl-tRNA synthetase [Helicobacter acinonychis str. Sheeba]
 gi|123362536|sp|Q17VZ5|SYT_HELAH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|109715173|emb|CAK00181.1| thrS [Helicobacter acinonychis str. Sheeba]
          Length = 612

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 150/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F    +          + +   
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSE--VSAILDFTHK 382

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             +    S  M   + P                           +    +      +   
Sbjct: 383 IMKAFDFSYEMELSTRPAKS-----------------IGDDKVWEKATNALKEALKEHHI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 NYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I LI I    +    
Sbjct: 475 EHNNAEQPVMIHRAILGSFERFIAILSEHFWGNFPFF---VAPTQIVLIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ +    + I+ R  
Sbjct: 529 FALKLKEELKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEMETEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|326692543|ref|ZP_08229548.1| prolyl-tRNA synthetase [Leuconostoc argentinum KCTC 3773]
          Length = 571

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 103/235 (43%), Positives = 146/235 (62%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+L+L+ G I   + G++++LPL Q+ L+ + AIIREE
Sbjct: 1   MKQSKLLMPTLREVPADAEVKSHQLLLKAGFIRPVAAGMFAYLPLAQRVLNKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A EM VP +  A+LW +SGRY++YG  + +  +R  +  I GPTHEE  T +   
Sbjct: 61  MDRIDANEMLVPEILPAELWEKSGRYETYGPALYKFKNRQARDFILGPTHEETFTQLMAD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQ+Q KFRDE RPRFG++R+REF+MKDAYSF     G   +Y+ M  +
Sbjct: 121 DIKSYKKLPLIVYQLQAKFRDENRPRFGLLRTREFIMKDAYSFSADQAGLDQAYHDMEAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R+GL    +  ++G +GG  S EF   A  GE  +  S    D+    E
Sbjct: 181 YTNIFDRIGLSYRAIVGDAGAMGGSDSKEFSAPAAAGEDIIAYSD-ASDYAANLE 234



 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 1/158 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            +   V  RGIE+GHIF  GT+YS  M A     +G+   + MGSYGIG  R+++A+ E 
Sbjct: 398 GKGHLVFTRGIEIGHIFKLGTRYSKTMGAQILDENGRQIDMIMGSYGIGVSRLLSAIAEQ 457

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++WP SVAPF + ++ +   D+       ++ A L+  G DV  DD  E+ G +
Sbjct: 458 MADDDGLVWPASVAPFDVHIVPVNLKDEDQARITSQLEAELTAQGLDVLVDDRKERAGVK 517

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           FA ADL+G P+++ VG K   D  VE+K R +    +M
Sbjct: 518 FADADLIGLPIRITVGKKAAED-VVEVKVRASNTNIEM 554


>gi|220917084|ref|YP_002492388.1| threonyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254783505|sp|B8J823|SYT_ANAD2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219954938|gb|ACL65322.1| threonyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 650

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 136/446 (30%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L T   H+ + G   WLP G    + +   +R    + G 
Sbjct: 238 LAKLEEVKKRDHRRLGPQLGLFT--FHEFAPGAPFWLPAGTVLYNVLEDAMRRLVLKNGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---------RNDKAMIYGPTHEEVMTDI 117
            E+  P L +  LW  SG +  Y + M  + D          +  +    P +      I
Sbjct: 296 QEVKTPLLFNKRLWETSGHWGKYRENMFLVVDSESDPALPLEDRCSFSLKPMNCPSHHLI 355

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +R   +SYR LP  ++      R+E      G+ R R+F   DA+ +    + +     +
Sbjct: 356 YRMDKRSYRELPVRYFTTDALHRNEASGSLGGLTRVRQFEQDDAHIYLREEQVTDE-VLR 414

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +F     ++   GL                   F     T   Q        D       
Sbjct: 415 IFELMKVVYGAFGLG------------------FEATFSTRPEQRIGDDALWDRAEALLR 456

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              D      ++     A Y    D+    + DSL    +     ++             
Sbjct: 457 KSLDATGLKWTLNAGDGAFYGPKIDML---VTDSLGRKWQTCTIQLDYAAP--------E 505

Query: 297 PMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               TF G D K+H    +     G+     A++   + G    W             + 
Sbjct: 506 RFDLTFVGEDNKEHRPVVIHRAIYGSFERFVAILVEHYAGAFPAW------LAPVQARVV 559

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                      +    L   G  V  D   +++G++   A L   P  ++VG K V    
Sbjct: 560 TVSDRFEAWAREAGEALQARGWRVEVDASSDKLGAKIRNAQLAKIPFTLVVGEKEVEAKG 619

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V  +       + M LE      +  
Sbjct: 620 VSPRRHGGEDLKTMPLETFAELMARE 645


>gi|295396075|ref|ZP_06806258.1| threonine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971016|gb|EFG46908.1| threonine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 667

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/457 (14%), Positives = 137/457 (29%), Gaps = 44/457 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y + I +   RD      +L L +    +   G+  + P G      +   +R      G
Sbjct: 241 YQVRIAEAERRDHRRLGAELDLFS-FPDELGSGLPVFHPKGGVIKREMEDYVRARHIEEG 299

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              +  P +    L+  SG    YG+ M                 +  +       +  +
Sbjct: 300 FEYVGTPHISKEALYYTSGHLPYYGENMFPAMQVDEQRDENGEIIKQGQPYRLKAMNCPM 359

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              I+RS  +SYR+LP   ++    +R+E      G+ R R     D++S+    + +  
Sbjct: 360 HNLIYRSRGRSYRDLPLRLFEFGTVYRNEASGVVHGLTRVRALTQDDSHSYVAVEDAASE 419

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    L +    GL    +   +    G  +++FI   +             D   
Sbjct: 420 -IKHLLDFMLSLLRDFGLDDFYLELSTRDAVGKKANKFIGSDEQ-----------WDEAT 467

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +                   A Y       + +  D++    ++S   ++         
Sbjct: 468 RTLEEVARATGLELVPDPGGAAFYGPKI---SVQARDAIGRTWQMSTVQLDFNQP----- 519

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    ++ ADG       + S   G++     V+   + G   +W   V    + +
Sbjct: 520 ---ERFDLEYQAADGSRKRPVMIHSAKFGSIERFLGVLTEHYAGAFPVWLSPVQAIMVPV 576

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                         E+I  +L   G  V  DD  ++   +   A     P  +I G +  
Sbjct: 577 A------DEFLPYVEEIAQKLKAHGIRVEIDDSTDRFPKKIRNASKSKVPYTLIAGGEDR 630

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
               V  + R       + +++ +            V
Sbjct: 631 DAHAVSFRFRDGSQENGVPVDQAVERIVDAIKTKAQV 667


>gi|223040968|ref|ZP_03611229.1| prolyl-tRNA synthetase [Campylobacter rectus RM3267]
 gi|222877765|gb|EEF12885.1| prolyl-tRNA synthetase [Campylobacter rectus RM3267]
          Length = 570

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 110/256 (42%), Positives = 155/256 (60%), Gaps = 1/256 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P  +E P+DA +ASHK +LR G   Q   G+Y++LPLG++ L+N+  I++EE
Sbjct: 1   MKFSKLYAPTAKEAPKDASLASHKFLLRAGYAEQVGSGLYNFLPLGKRVLENIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+S+  + SADLW ESGR+D YGKE+LR  DR +   +  PT+EE +  + R 
Sbjct: 61  LDEAGAQEISMSFVTSADLWRESGRFDVYGKELLRFKDRKENDFVLSPTNEESVVALVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG++R REFLMKD YSF    E     ++ M  +
Sbjct: 121 KVTSYKQLPLNLYQINTKFRDEARPRFGLLRGREFLMKDGYSFHANAEDLDREFDLMEKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RLGL    +RA+SG IGG  S EF+VLA++GE  +   ++  D+    E     
Sbjct: 181 YSKIFTRLGLNFRAVRADSGAIGGSGSKEFMVLANSGEDDIIVCENC-DYAANIEAATRA 239

Query: 241 DIISLNSIVEQWTAPY 256
              +     E   A +
Sbjct: 240 KRTTQAERPEADAAKF 255



 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/183 (37%), Positives = 99/183 (54%), Gaps = 3/183 (1%)

Query: 261 DVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   K  D  P        ++GIEVGHIF  GTKYS PM+ATF   +GK     MG YG
Sbjct: 389 DLTAVKAGDKCPCCGGNLSVSKGIEVGHIFKLGTKYSEPMNATFLDENGKAKPFIMGCYG 448

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+VA  +E+ HD KGIIW ++++PFK  +I     D+      + +Y  L + G  
Sbjct: 449 IGVSRLVAVAVEAKHDEKGIIWNETLSPFKFEIIISNLKDEEGVKFAQGLYEDLREAGVS 508

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G + +  +L+GFP  VIVG K +++  VE+  R   ++E +   E++   
Sbjct: 509 VLLDDRNERFGVKMSEFELMGFPYAVIVG-KGLAEGTVELVTRGGLVKETVKASEILARL 567

Query: 439 SHR 441
              
Sbjct: 568 KSL 570


>gi|260591627|ref|ZP_05857085.1| threonine--tRNA ligase [Prevotella veroralis F0319]
 gi|260536427|gb|EEX19044.1| threonine--tRNA ligase [Prevotella veroralis F0319]
          Length = 649

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 80/450 (17%), Positives = 151/450 (33%), Gaps = 38/450 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L      +  KG+  WLP G +    +  ++R      
Sbjct: 232 EYLVMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQELLRRLLRPY 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P +   +L+V SG Y  YGK+  +       D+  +  P +     +++    
Sbjct: 291 NYQEVITPGIGGKNLYVTSGHYAHYGKDAFQPIHTPEEDEEYMLKPMNCPHHCEVYAYKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    FR E      G+ R R F   DA+ F   P+  K  +       
Sbjct: 351 RSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIFVR-PDQVKAEFETNIDII 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L++F   G  +   +                  D  + + +   D +     +      +
Sbjct: 410 LKVFATFGFDNYEAQISLR--------------DPNDKEKYIGSDEVWEESEAAIKAACE 455

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++      F          
Sbjct: 456 EKGLKARVELGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLPNRF--------KL 504

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D        +     G++    AV+     G   +W           + I    +
Sbjct: 505 EYTAEDNTKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW------LTPDQVAILPISE 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   K+ A           DD  E+IG +    +L   P  VIVG K  +   V ++
Sbjct: 559 KYNDYARKVKAYFDAHDVRSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEAAQGLVSMR 618

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  G +  M++EE     +   +     L
Sbjct: 619 QQGGGEQATMTMEEFTKRINDEVAEQLKTL 648


>gi|146304348|ref|YP_001191664.1| threonyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
 gi|172046910|sp|A4YH38|SYT_METS5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145702598|gb|ABP95740.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Metallosphaera
           sedula DSM 5348]
          Length = 541

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 162/442 (36%), Gaps = 37/442 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + + +  D  I   ++ L +    +   G+  + P GQ   + +   +RE     G
Sbjct: 124 YLQWLEKASETDHRIIGERMDLFSFH-EESGPGLVLFHPKGQLIRNEMINYMREINASMG 182

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+    +    LW  SG YD+Y  +ML    ++D  +   P +      I++S ++SY
Sbjct: 183 YQEVYTSHVFRTVLWKISGHYDTYRDKMLIFQ-KDDDELGIKPMNCPAHILIYKSRVRSY 241

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +    +R E +   +G++R+R F   D + F    +      N +  +    
Sbjct: 242 RDLPIRFSEFGNVYRWEKKGELYGLLRTRGFTQDDGHIFLREDQLKDEVKNLVRKT---- 297

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                        +     G    +  +   T   +   S +  +    +      ++  
Sbjct: 298 ------------LDVLGKFGFKGEDVRINLSTRPDESIGSDEQWEKATKALLDVLKELNV 345

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E+  A Y    D     + DSL    ++S   ++    F    ++       +  
Sbjct: 346 PYVVKEKEGAFYGPKIDFD---IRDSLNRWWQLSTIQVD----FNLPERF----KLEYVD 394

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +     G++  + A++     GK   W   ++P ++ ++ I    +   D
Sbjct: 395 EDGSKKRPVMVHRAIYGSLDRMIAILLEHFRGKLPTW---LSPVQVRVLPI---SEDNLD 448

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++   L + G     D  GE +  +       G P  VIVG K  S+ KV I+ R  
Sbjct: 449 YAKRVMDVLVQRGIRTEIDPSGETLSKRIKRGYDDGVPYLVIVGRKEASEEKVTIRARGN 508

Query: 424 GIREDMSLEEVINYASHRFSNN 445
              + + L   ++  S    N 
Sbjct: 509 VEIKGVPLSRFVDELSLEIGNR 530


>gi|88597079|ref|ZP_01100315.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190768|gb|EAQ94741.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315927040|gb|EFV06395.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 568

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 112/271 (41%), Positives = 159/271 (58%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAA--- 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                    E+  A YA+     N K  DSL
Sbjct: 237 KRAKKTCQDERPEANYASKFHTPNIKTIDSL 267



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 346 DFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKEGDCCVKCGAKLKQS 405

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD KG I
Sbjct: 406 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEANHDEKGCI 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +    +L+G
Sbjct: 466 WNKTLAPFVLEIIVSNLKDEKALEFANKLYRDLTNLGLEVLLDDRNERFGVKMNDFELMG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 526 FPYALVIG-KGLENNEIELIQREGLVKELIKTDELMEILKKKV 567


>gi|315057961|gb|ADT72290.1| Prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni S3]
          Length = 568

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 112/271 (41%), Positives = 159/271 (58%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAA--- 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                    E+  A YA+     N K  DSL
Sbjct: 237 KRAKKTCQDERPEANYASKFHTPNIKTIDSL 267



 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 108/223 (48%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 346 DFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKEGDCCVKCGAKLKQS 405

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A   E+SHD KG I
Sbjct: 406 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVATEASHDEKGCI 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +    +L+G
Sbjct: 466 WNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMNDFELMG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  ++VG K +  +++E+  R   I+E +  +E++     + 
Sbjct: 526 FPYALVVG-KGLEKNEIELIQREGLIKELIKTDELMEILKKKV 567


>gi|313829616|gb|EFS67330.1| prolyl-tRNA synthetase [Propionibacterium acnes HL063PA2]
          Length = 581

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 105/271 (38%), Positives = 152/271 (56%), Gaps = 6/271 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F    +E P DAE+ SH+ ++R G I + + G+YSWLPLG + +  + AI REE  
Sbjct: 1   MSQLFARPRREAPADAEVPSHRWLVRAGYIRRVAPGVYSWLPLGLRVMRRIEAICREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+S P L ++D + E+GR+  YG  + RL DR    M+ GPTHEE+ T + +   
Sbjct: 61  SIGAQEVSFPALLASDPYKETGRWVEYGDNLFRLKDRKGVDMLLGPTHEEMFTLMVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP   YQIQ K+RDE RPR G++R REF+M DAYSFD+  EG   +Y     +Y+
Sbjct: 121 SSYKDLPLCLYQIQNKYRDEARPRAGILRGREFVMMDAYSFDVAQEGLDEAYQAQRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RLG     ++A SGP+GG  S EF+ +A  GE     S       + +      D 
Sbjct: 181 RIFNRLGFDYAIVKAMSGPMGGSRSEEFLAVAANGEDTFVRSSGGYAANVEAVRMAVPDP 240

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           + ++        P A   D  + +  +SL  
Sbjct: 241 LPID------GLPEAEVVDTPDARTIESLVR 265



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              DV   +  D  P+   +   ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 395 GVIDVAEIREGDPAPDGSGELHLARGIEIGHIFQLGKKYADALGLKVLDHNGKLVTVTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E + D KG+ WP  VAP+ + ++      ++  +   +I + L++ 
Sbjct: 455 SYGLGVSRAVAAIAEGTCDEKGLCWPREVAPYDVQVLATGKGTEILDE-ATRIASELAEA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +FA +++LG P  V+VG + + D  VE++ R TG    +S+ E +
Sbjct: 514 GLEVLLDDRKASPGVKFADSEILGMPTSVVVG-RGLKDGLVEVRDRSTGENRQVSVAEAV 572

Query: 436 NYASHRFS 443
                   
Sbjct: 573 CAVLKEVR 580


>gi|308234806|ref|ZP_07665543.1| threonyl-tRNA synthetase [Gardnerella vaginalis ATCC 14018]
 gi|311114574|ref|YP_003985795.1| threonine--tRNA ligase [Gardnerella vaginalis ATCC 14019]
 gi|310946068|gb|ADP38772.1| threonine--tRNA ligase [Gardnerella vaginalis ATCC 14019]
          Length = 676

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/457 (13%), Positives = 134/457 (29%), Gaps = 49/457 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      ++ L +    +   G+  + P G   ++ +    RE+  +  
Sbjct: 244 YTTRMEEAAKRDHRKLGQEMDLFS-FPDEIGPGLAVFHPKGAAIINAMEDYSREQHRKHH 302

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R        P +  +
Sbjct: 303 YSFVQTPHITKGGLYETSGHLQWYKDGMYPPMKLDEERDENGNVTRQGADYYLKPMNCPM 362

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +    
Sbjct: 363 HNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTQDDSHIYCTREQMRDE 422

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    L +    GL    +   +                  E +   S +  +   
Sbjct: 423 L-KSLLNFVLGLLKDFGLNDFYLELST----------------KDEHKFVGSDEIWEEAT 465

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +      +            A Y       + +  D++    +VS   ++    F    
Sbjct: 466 NTLAEVAKESGLELVDDPGGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNLPE 518

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       +  ADG       +     G++    A++   + G    W   V    + +
Sbjct: 519 RF----KLEYIAADGSHQRPVMIHRALFGSIERFFAILLEHYAGAFPAWLAPVQVTGVPV 574

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                         +K  + L +       D   ++ G +   A     P  +I G + V
Sbjct: 575 A------DEFAPHLQKFISDLEENMVRCEMDSSDDRFGKKIRNASKSKVPFTLIAGEEDV 628

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           +++ V  + R       + +E+   +          V
Sbjct: 629 NNNAVSFRFRDGSQLNGVPVEQAKEWILSIIKQRVQV 665


>gi|255325106|ref|ZP_05366212.1| threonine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
 gi|255297671|gb|EET76982.1| threonine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
          Length = 687

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 59/448 (13%), Positives = 133/448 (29%), Gaps = 47/448 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L +    +   G   + P G      +    R    + G   ++
Sbjct: 260 EEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPNGATVRMEMENHSRNRHVQAGYSFVN 318

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRND------------KAMIYGPTHEEVMTDIF 118
            P +   DL+ +SG  D Y   M      +             +     P +  +   IF
Sbjct: 319 TPHITKGDLFKKSGHLDFYADGMFPPMQLDGEYDEEGNTVKEPQDYYAKPMNCPMHNLIF 378

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            S  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +  +     +
Sbjct: 379 ASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTEEQLEEELTK-V 437

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               + +    GL    +   +                    +   S +  +       +
Sbjct: 438 LDFIISLLKDYGLSDFYLELST----------------KDPNKFVGSDEIWERSTSILQS 481

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +             A Y       + +  D++    ++S   ++    F    ++ L 
Sbjct: 482 VAEKSGLELVPDPAGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLPERFELE 534

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +A+      K   + +     G++     V+   + G    W        I +      
Sbjct: 535 YTAS---DGTKKRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVVGIPVA----- 586

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   E++  +L + G     D   +++  +         P  ++ G++ V    V 
Sbjct: 587 -DEFSPHLEEVATQLRQKGIRADVDTSDDRMQKKIRNHTTGKVPFMLVAGARDVEADAVS 645

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            +         + ++E +   +   +  
Sbjct: 646 FRFLDGTQVNGVPVKEAVELIAAWVAER 673


>gi|15644753|ref|NP_206923.1| threonyl-tRNA synthetase [Helicobacter pylori 26695]
 gi|2501057|sp|P56071|SYT_HELPY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2313207|gb|AAD07192.1| threonyl-tRNA synthetase (thrS) [Helicobacter pylori 26695]
          Length = 612

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 151/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSQALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F                + L  
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCS-----FEQIQSEVSAILDF 379

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                         +  I       + +   T   +        +    +      +   
Sbjct: 380 --------------THKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATNALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 EYNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QDQYKMPLKEFLNMVESKMQE 609


>gi|34557905|ref|NP_907720.1| prolyl-tRNA synthetase [Wolinella succinogenes DSM 1740]
 gi|81832821|sp|Q7M8L1|SYP_WOLSU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|34483623|emb|CAE10620.1| PROLYL-TRNA SYNTHETASE [Wolinella succinogenes]
          Length = 570

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 103/235 (43%), Positives = 150/235 (63%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S +F P L+E P+DA + SH+ ++R G I Q   GIY++LPLG++ +D +  +++EE
Sbjct: 1   MRFSAFFAPTLKEAPKDATLKSHEYLIRGGYIQQVGSGIYNFLPLGKRVMDKIRQVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +  +  A+LW  SGR++ YGKE+LR  DR +   + GPTHEE++ ++ + 
Sbjct: 61  MDQAGAQEVMLGFVTPAELWRNSGRFEKYGKELLRFKDRKENDFVLGPTHEEMVVELAKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   YQI LKFRDE+RPRFG+MR REF+MKD YSF          +  M  +
Sbjct: 121 YVKSYKQLPLHLYQIHLKFRDEIRPRFGLMRGREFVMKDGYSFHANEADLIREFELMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL    + A+SG IGG  S EF+VLA +GE  +       ++    E
Sbjct: 181 YKRIFTRLGLDFRVVEADSGAIGGSGSKEFMVLAQSGEDTIAVCDSC-EYAANIE 234



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/183 (37%), Positives = 97/183 (53%), Gaps = 3/183 (1%)

Query: 261 DVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+      D  P  E +    +GIEVGHIF  GT+YS P+ A F   +GK   + MG YG
Sbjct: 389 DLAEVGEGDGCPLCEGRLTYKKGIEVGHIFQLGTRYSEPLGANFLNPEGKSQPLVMGCYG 448

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R++AAVIE  HD KG IW  S APF + ++     D   +   E +Y  L K G +
Sbjct: 449 IGVSRLLAAVIEQHHDEKGCIWTKSTAPFNLVIVVSNVKDPSQKAYAENLYNALQKEGIE 508

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ GS+ A  +LLG P  VIVG K + + +VE+ +R    +  +  ++++   
Sbjct: 509 VLLDDRDERYGSKMADFELLGIPYAVIVG-KGLIEGQVELVNRANLQKGIVLADDILGRI 567

Query: 439 SHR 441
              
Sbjct: 568 LEL 570


>gi|212696507|ref|ZP_03304635.1| hypothetical protein ANHYDRO_01045 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676492|gb|EEB36099.1| hypothetical protein ANHYDRO_01045 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 390

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/423 (16%), Positives = 131/423 (30%), Gaps = 41/423 (9%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           + L +   H+ + G   +   G      +     +     G  E+  P + + +LW  SG
Sbjct: 1   MNLFS--FHEEAPGFPFFKENGMILRHELLNWWTDVLAENGYGEIQTPLIMNEELWHRSG 58

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
            +D Y + M      + +     P +      ++     SYR+LP    +     R EL 
Sbjct: 59  HWDHYKENM-YFTKIDGENYAVKPMNCPGSVLVYGEEPHSYRDLPIRLAEYGQVHRHELS 117

Query: 145 PR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G+ R R F   DA+ + L  +     +         ++   G K       + P  
Sbjct: 118 GALHGLFRVRTFTQDDAHVYCLPSQVKDEVFKM-IDLADLLYSTFGFKYKI-ELSTRPDD 175

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                E                   DF   +      +      I  +  A Y    D H
Sbjct: 176 FMGKIE-----------------EWDFAEKALEDALKERGIDYQINPKDGAFYGPKIDFH 218

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAM 322
            E            + R  + G I     +       T+   +G+      +    +G++
Sbjct: 219 LEDA----------AKRTWQCGTI-QLDFQLPQNFDLTYIDENGEKKRPVMLHRALLGSV 267

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                 +     G+  +W           + I        D  + +  ++ K G  V  D
Sbjct: 268 ERFIGSVTEQFAGRFPLW------INPKQVAIIPVSDKFADFADDLAEKIKKAGYRVDVD 321

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              E +G +   A L+     ++VG       K+ +++R     +D+S EE I   +   
Sbjct: 322 HRSEGVGYKIRQAQLMRTNYMLVVGENEEKSGKLTVRNRDGEETKDVSFEEFIEKLNQER 381

Query: 443 SNN 445
            + 
Sbjct: 382 DSK 384


>gi|218562195|ref|YP_002343974.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|81858473|sp|Q9PHX1|SYP_CAMJE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|112359901|emb|CAL34689.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
          Length = 569

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 112/271 (41%), Positives = 159/271 (58%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAA--- 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                    E+  A YA+     N K  DSL
Sbjct: 238 KRAKKTCQDERPEANYASKFHTPNIKTIDSL 268



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 347 DFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKEGDCCVKCGAKLKQS 406

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD KG I
Sbjct: 407 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEANHDEKGCI 466

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +    +L+G
Sbjct: 467 WNKTLAPFVLEIIVSNLKDEKALEFANKLYRDLTNLGLEVLLDDRNERFGVKMNDFELMG 526

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 527 FPYALVIG-KGLENNEIELIQREGLVKELIKTDELMEILKKKV 568


>gi|298346548|ref|YP_003719235.1| proline--tRNA ligase [Mobiluncus curtisii ATCC 43063]
 gi|298236609|gb|ADI67741.1| proline--tRNA ligase [Mobiluncus curtisii ATCC 43063]
          Length = 623

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 104/277 (37%), Positives = 153/277 (55%), Gaps = 2/277 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S +F+  L+E+P +AE+ SHKL++R G I + + GIY+WLPLG K L  V  I+REE 
Sbjct: 4   KMSSFFVRTLREDPVEAEVDSHKLLVRAGYIRRAAPGIYTWLPLGLKTLRRVENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  P L S++ +V + R++ +G  + +L DR +   +  PTHEE+ T   +  
Sbjct: 64  DRIGGQELQFPMLLSSEPYVATNRWEEFGPSLFKLKDRKEGDYLLAPTHEEMFTLAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ++ K+RDE RPR G++R REF+MKD+YSFDLT +G +HSY     +Y
Sbjct: 124 YTSYKDLPVILYQMKEKYRDEARPRAGIIRGREFVMKDSYSFDLTDDGLEHSYALHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            R+F RLGL  +   A SGP+GG  S EF+     GE     S         +  T   +
Sbjct: 184 RRVFTRLGLDFVICHAMSGPMGGSASEEFLFPCAIGEDTFVKSPGGYAANAEAVTTIAPE 243

Query: 242 IISLN--SIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            +        E    P A T +    +     P   R
Sbjct: 244 PLPYEDAPAAEVRPTPDATTIEALVNQANKLYPRPDR 280



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 5/190 (2%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           AT +       D  P+        RGIE+GHIF  G KY+  +  +    +GK   V MG
Sbjct: 410 ATIEAAEVMEGDPAPDGSGSLTLERGIEIGHIFALGRKYAKALGLSVLDENGKSQVVTMG 469

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VAA+ E +HD +G++WP ++APF++ ++     D       EK+  +L   
Sbjct: 470 SYGIGVSRLVAAIAEENHDDRGLMWPLNIAPFQVHVLATG-KDPEIFATAEKLACQLDAA 528

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +DD      G +F  A+LLG P  ++VG K +++ KVEI+ R  G  ++ + E  
Sbjct: 529 GLQVLYDDRPKASAGVKFKDAELLGMPYALVVG-KGLAEGKVEIRQRREGTTQETTPESC 587

Query: 435 INYASHRFSN 444
           +         
Sbjct: 588 VEELLQAIEK 597


>gi|156354210|ref|XP_001623293.1| predicted protein [Nematostella vectensis]
 gi|156209976|gb|EDO31193.1| predicted protein [Nematostella vectensis]
          Length = 559

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 148/437 (33%), Gaps = 39/437 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD         L     H+ S G   +LP G    + +   I+E+  + G  E+ 
Sbjct: 152 EEAAKRDHRKIGRDQELF--FFHELSPGSCFFLPKGAVIYNTLINFIKEQYWKRGFQEVV 209

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + S  LW  SG +  Y + M    +   ++    P +      +F    +S+R LP 
Sbjct: 210 SPNIYSTKLWETSGHWQHYSEHMFSF-EVEKESYALKPMNCPGHCLMFDHRPRSWRELPL 268

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +  +   +        ++   G
Sbjct: 269 RMADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTADQIGQEIISC-LDFLKHVYGVFG 327

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                    + P       E    A+                        +       + 
Sbjct: 328 FTFKLN-LSTRPEKYLGKIELWNQAEK-----------------ELEAALNGFGQAWVLN 369

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+   ++ D+L    + +   ++    F    +++L           + 
Sbjct: 370 PGDGAFYGPKIDI---QIQDALRRYHQCATIQLD----FQLPERFNLTYVTGEGDE--RK 420

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +  G  WP  ++P +  +I I        +  +K+ 
Sbjct: 421 RPVIVHRAILGSVERMIAILT---ESFGGKWPFWLSPRQAIVIPIGPK---YDEYAQKVM 474

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           + +   G  V  D D G  +  +   A L  +    +VG K  +   V ++ R   +  +
Sbjct: 475 SDILAAGYHVDADLDHGTTLNKKVRNAQLAQYNFIFVVGEKEATTGTVNVRTRDNKVHGE 534

Query: 429 MSLEEVINYASHRFSNN 445
            S+E V+N  +   S  
Sbjct: 535 FSVEAVLNKFATLTSER 551


>gi|315657037|ref|ZP_07909922.1| proline--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315492429|gb|EFU82035.1| proline--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 623

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 98/240 (40%), Positives = 144/240 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S +F+  L+E+P +AE+ SHKL++R G I + + GIY+WLPLG K L  V  I+REE 
Sbjct: 4   KMSSFFVRTLREDPVEAEVDSHKLLVRAGYIRRAAPGIYTWLPLGLKTLRRVENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  P L S++ +V + R++ +G  + +L DR +   +  PTHEE+ T   +  
Sbjct: 64  DRIGGQELQFPMLLSSEPYVATNRWEEFGPSLFKLKDRKEGDYLLAPTHEEMFTLAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ++ K+RDE RPR G++R REF+MKD+YSFDLT +G +HSY     +Y
Sbjct: 124 YTSYKDLPVILYQMKEKYRDEARPRAGIIRGREFVMKDSYSFDLTDDGLEHSYALHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            R+F RLGL  +   A SGP+GG  S EF+     GE     S         +  T   +
Sbjct: 184 RRVFTRLGLDFVICHAMSGPMGGSASEEFLFPCAIGEDTFVKSPGGYAANAEAVTTIAPE 243



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 5/190 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           AT +       D  P+        RGIE+GHIF  G KY+  +  +    +GK   V MG
Sbjct: 410 ATIEAAEVMEGDPAPDGSGPLTLERGIEIGHIFALGRKYAKALGLSVLDENGKSQVVTMG 469

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VAA+ E +HD +G++WP ++APF++ ++     D       EK+  +L   
Sbjct: 470 SYGIGVSRLVAAIAEENHDDRGLMWPLNIAPFQVHVLATG-KDPEIFATAEKLACQLDAA 528

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +DD      G +F  A+LLG P  ++VG K +++ KVEI+ R  G  ++ + E  
Sbjct: 529 GLQVLYDDRPKASAGVKFKDAELLGMPYALVVG-KGLAEGKVEIRQRREGTTQETTPESC 587

Query: 435 INYASHRFSN 444
           +         
Sbjct: 588 VEELLQAIEK 597


>gi|315655105|ref|ZP_07908007.1| proline--tRNA ligase [Mobiluncus curtisii ATCC 51333]
 gi|315490586|gb|EFU80209.1| proline--tRNA ligase [Mobiluncus curtisii ATCC 51333]
          Length = 623

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 98/240 (40%), Positives = 144/240 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S +F+  L+E+P +AE+ SHKL++R G I + + GIY+WLPLG K L  V  I+REE 
Sbjct: 4   KMSSFFVRTLREDPVEAEVDSHKLLVRAGYIRRAAPGIYTWLPLGLKTLRRVENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  P L S++ +V + R++ +G  + +L DR +   +  PTHEE+ T   +  
Sbjct: 64  DRIGGQELQFPMLLSSEPYVATNRWEEFGPSLFKLKDRKEGDYLLAPTHEEMFTLAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ++ K+RDE RPR G++R REF+MKD+YSFDLT +G +HSY     +Y
Sbjct: 124 YTSYKDLPVILYQMKEKYRDEARPRAGIIRGREFVMKDSYSFDLTDDGLEHSYALHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            R+F RLGL  +   A SGP+GG  S EF+     GE     S         +  T   +
Sbjct: 184 RRVFTRLGLDFVICHAMSGPMGGSASEEFLFPCAIGEDTFVKSPGGYAANAEAVTTIAPE 243



 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 98/190 (51%), Gaps = 5/190 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           AT +       D  P+        RGIE+GHIF  G KY+  +  +    +GK   V MG
Sbjct: 410 ATIEAAEIMEGDPAPDGSGPLTMERGIEIGHIFALGRKYAKALGLSVLDENGKSQVVTMG 469

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VAA+ E +HD KG+IWP ++APF++ ++     D       EK+  +L   
Sbjct: 470 SYGIGVSRLVAAIAEENHDDKGLIWPLNIAPFQVHVLATG-KDPEIFATAEKLACQLDAA 528

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +DD      G +F  A+LLG P  ++VG K +++ K+EI+ R  G  ++ + E  
Sbjct: 529 GLQVLYDDRPKASAGVKFKDAELLGMPYALVVG-KGLAEGKIEIRQRREGTTQETTPESC 587

Query: 435 INYASHRFSN 444
           +        N
Sbjct: 588 VEELLQAIEN 597


>gi|304389734|ref|ZP_07371693.1| proline--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304326910|gb|EFL94149.1| proline--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 623

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 98/240 (40%), Positives = 144/240 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S +F+  L+E+P +AE+ SHKL++R G I + + GIY+WLPLG K L  V  I+REE 
Sbjct: 4   KMSSFFVRTLREDPVEAEVDSHKLLVRAGYIRRAAPGIYTWLPLGLKTLRRVENIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  E+  P L S++ +V + R++ +G  + +L DR +   +  PTHEE+ T   +  
Sbjct: 64  DRIGGQELQFPMLLSSEPYVATNRWEEFGPSLFKLKDRKEGDYLLAPTHEEMFTLAVKDM 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQ++ K+RDE RPR G++R REF+MKD+YSFDLT +G +HSY     +Y
Sbjct: 124 YTSYKDLPVILYQMKEKYRDEARPRAGIIRGREFVMKDSYSFDLTDDGLEHSYALHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            R+F RLGL  +   A SGP+GG  S EF+     GE     S         +  T   +
Sbjct: 184 RRVFTRLGLDFVICHAMSGPMGGSASEEFLFPCAIGEDTFVKSPGGYAANAEAVTTIAPE 243



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 5/190 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           AT +       D  P+        RGIE+GHIF  G KY+  +  +    +GK   V MG
Sbjct: 410 ATIEAAEVMEGDPAPDGSGPLTLERGIEIGHIFALGRKYAKALGLSVLDENGKSQVVTMG 469

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VAA+ E +HD +G++WP ++APF++ ++     D       EK+  +L   
Sbjct: 470 SYGIGVSRLVAAIAEENHDDRGLMWPLNIAPFQVHVLATG-KDPEIFATAEKLACQLDAA 528

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +DD      G +F  A+LLG P  ++VG K +++ KVEI+ R  G  ++ + E  
Sbjct: 529 GLQVLYDDRPKASAGVKFKDAELLGMPYALVVG-KGLAEGKVEIRQRREGTTQETTPESC 587

Query: 435 INYASHRFSN 444
           +         
Sbjct: 588 VEELLQAIEK 597


>gi|153952152|ref|YP_001398429.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97]
 gi|166980114|sp|A7H4J9|SYP_CAMJD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152939598|gb|ABS44339.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 569

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 112/271 (41%), Positives = 159/271 (58%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANIEAA--- 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                    E+  A YA+     N K  DSL
Sbjct: 238 KRAKKTCQDERPEANYASKFHTPNIKTIDSL 268



 Score =  156 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 347 DFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKEGDCCVKCGAKLKQS 406

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE+SHD KG I
Sbjct: 407 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEASHDEKGCI 466

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  L+++G +V  DD  E+ G +    +L+G
Sbjct: 467 WNKTLAPFVLEIIVSNIKDEKTLEFANKLYEDLTELGLEVLLDDRNERFGVKMNDFELMG 526

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  +++G K + ++++E   R   ++E +  +E+      + 
Sbjct: 527 FPYALVIG-KGLENNEIEFIQREGLVKELIKTDELTEILKKKV 568


>gi|145295791|ref|YP_001138612.1| threonyl-tRNA synthetase [Corynebacterium glutamicum R]
 gi|140845711|dbj|BAF54710.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 686

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 65/454 (14%), Positives = 133/454 (29%), Gaps = 50/454 (11%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +L +   RD      +L L +        G+  + P G    + +    R      G
Sbjct: 254 YQTMLAEAEKRDHRRLGTELDLFS-FPDDLGSGLPVFHPNGGIVRNEMEDHSRRRHIAAG 312

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              ++ P +   DL+  SG    Y   M                 +  +     P +  +
Sbjct: 313 YSFVNTPHITKQDLFERSGHLGFYKDGMFPPMQVDAEFDEDGNVTKPGQEYYLKPMNCPM 372

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  + 
Sbjct: 373 HNLIFDSRGRSYRELPLRLFEFGNVYRYEKSGVIHGLTRARGFTQDDAHIYC-TEDQLEA 431

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    L +    GL    +   +                        S +  +   
Sbjct: 432 ELTSVLDFILSLLRDYGLDDFYLELSTRDPKKS----------------VGSDEIWERST 475

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
              N    +         +  A Y       + +  D++    ++S   ++         
Sbjct: 476 EILNRVATNSGLELVPDPEGAAFYGPKI---SVQARDAIGRTWQMSTVQLDFNMP----- 527

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                 +  +  +DG       +     G++     V+   + G    W        I +
Sbjct: 528 ---ERFNLEYTSSDGSKQQPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVMGIPV 584

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                    C    E I A+L + G     D   +++  +         P  ++ G++ V
Sbjct: 585 A------DDCIPHLETITAQLREKGIRADVDTSDDRMQKKIRNHTTGKVPFMLLAGARDV 638

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + V  +         + ++E I   S    + 
Sbjct: 639 EANAVSFRFLDGTQVNGVPVDEAIAVISSWIGDR 672


>gi|73919785|sp|Q8NPZ0|SYT_CORGL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 695

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 65/454 (14%), Positives = 133/454 (29%), Gaps = 50/454 (11%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +L +   RD      +L L +        G+  + P G    + +    R      G
Sbjct: 263 YQTMLAEAEKRDHRRLGTELDLFS-FPDDLGSGLPVFHPNGGIVRNEMEDHSRRRHIAAG 321

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              ++ P +   DL+  SG    Y   M                 +  +     P +  +
Sbjct: 322 YSFVNTPHITKQDLFERSGHLGFYKDGMFPPMQVDAEFDEDGNVTKPGQEYYLKPMNCPM 381

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  + 
Sbjct: 382 HNLIFDSRGRSYRELPLRLFEFGNVYRYEKSGVIHGLTRARGFTQDDAHIYC-TEDQLEA 440

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    L +    GL    +   +                        S +  +   
Sbjct: 441 ELTSVLDFILSLLRDYGLDDFYLELSTRDPKKS----------------VGSDEIWERST 484

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
              N    +         +  A Y       + +  D++    ++S   ++         
Sbjct: 485 EILNRVATNSGLELVPDPEGAAFYGPKI---SVQARDAIGRTWQMSTVQLDFNMP----- 536

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                 +  +  +DG       +     G++     V+   + G    W        I +
Sbjct: 537 ---ERFNLEYTSSDGSKQQPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVMGIPV 593

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                    C    E I A+L + G     D   +++  +         P  ++ G++ V
Sbjct: 594 A------DDCIPHLETITAQLREKGIRADVDTSDDRMQKKIRNHTTGKVPFMLLAGARDV 647

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + V  +         + ++E I   S    + 
Sbjct: 648 EANAVSFRFLDGTQVNGVPVDEAIAVISSWIGDR 681


>gi|62390552|ref|YP_225954.1| threonyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|41325890|emb|CAF20053.1| THREONYL-TRNA SYNTHETASE [Corynebacterium glutamicum ATCC 13032]
          Length = 700

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 65/454 (14%), Positives = 133/454 (29%), Gaps = 50/454 (11%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +L +   RD      +L L +        G+  + P G    + +    R      G
Sbjct: 268 YQTMLAEAEKRDHRRLGTELDLFS-FPDDLGSGLPVFHPNGGIVRNEMEDHSRRRHIAAG 326

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              ++ P +   DL+  SG    Y   M                 +  +     P +  +
Sbjct: 327 YSFVNTPHITKQDLFERSGHLGFYKDGMFPPMQVDAEFDEDGNVTKPGQEYYLKPMNCPM 386

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  + 
Sbjct: 387 HNLIFDSRGRSYRELPLRLFEFGNVYRYEKSGVIHGLTRARGFTQDDAHIYC-TEDQLEA 445

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    L +    GL    +   +                        S +  +   
Sbjct: 446 ELTSVLDFILSLLRDYGLDDFYLELSTRDPKKS----------------VGSDEIWERST 489

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
              N    +         +  A Y       + +  D++    ++S   ++         
Sbjct: 490 EILNRVATNSGLELVPDPEGAAFYGPKI---SVQARDAIGRTWQMSTVQLDFNMP----- 541

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                 +  +  +DG       +     G++     V+   + G    W        I +
Sbjct: 542 ---ERFNLEYTSSDGSKQQPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVMGIPV 598

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                    C    E I A+L + G     D   +++  +         P  ++ G++ V
Sbjct: 599 A------DDCIPHLETITAQLREKGIRADVDTSDDRMQKKIRNHTTGKVPFMLLAGARDV 652

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + V  +         + ++E I   S    + 
Sbjct: 653 EANAVSFRFLDGTQVNGVPVDEAIAVISSWIGDR 686


>gi|19552881|ref|NP_600883.1| threonyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|21324440|dbj|BAB99064.1| Threonyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
          Length = 686

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 65/454 (14%), Positives = 133/454 (29%), Gaps = 50/454 (11%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +L +   RD      +L L +        G+  + P G    + +    R      G
Sbjct: 254 YQTMLAEAEKRDHRRLGTELDLFS-FPDDLGSGLPVFHPNGGIVRNEMEDHSRRRHIAAG 312

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEV 113
              ++ P +   DL+  SG    Y   M                 +  +     P +  +
Sbjct: 313 YSFVNTPHITKQDLFERSGHLGFYKDGMFPPMQVDAEFDEDGNVTKPGQEYYLKPMNCPM 372

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  + 
Sbjct: 373 HNLIFDSRGRSYRELPLRLFEFGNVYRYEKSGVIHGLTRARGFTQDDAHIYC-TEDQLEA 431

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    L +    GL    +   +                        S +  +   
Sbjct: 432 ELTSVLDFILSLLRDYGLDDFYLELSTRDPKKS----------------VGSDEIWERST 475

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
              N    +         +  A Y       + +  D++    ++S   ++         
Sbjct: 476 EILNRVATNSGLELVPDPEGAAFYGPKI---SVQARDAIGRTWQMSTVQLDFNMP----- 527

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                 +  +  +DG       +     G++     V+   + G    W        I +
Sbjct: 528 ---ERFNLEYTSSDGSKQQPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVMGIPV 584

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                    C    E I A+L + G     D   +++  +         P  ++ G++ V
Sbjct: 585 A------DDCIPHLETITAQLREKGIRADVDTSDDRMQKKIRNHTTGKVPFMLLAGARDV 638

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + V  +         + ++E I   S    + 
Sbjct: 639 EANAVSFRFLDGTQVNGVPVDEAIAVISSWIGDR 672


>gi|86149024|ref|ZP_01067256.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85840382|gb|EAQ57639.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6]
          Length = 569

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 112/271 (41%), Positives = 159/271 (58%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAA--- 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                    E+  A YA+     N K  DSL
Sbjct: 238 KRAKKTCQDERPEANYASKFHTPNIKTIDSL 268



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 347 DFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKEGDCCVKCGAKLKQS 406

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD KG I
Sbjct: 407 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEANHDEKGCI 466

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +    +L+G
Sbjct: 467 WNKTLAPFVLEIIVSNLKDEKALEFANKLYRDLTNLGLEVLLDDRNERFGVKMNDFELMG 526

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 527 FPYALVIG-KGLENNEIELIQREGLVKELIKTDELMEILKKKV 568


>gi|57238257|ref|YP_178662.1| prolyl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|81819550|sp|Q5HVM3|SYP_CAMJR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|57167061|gb|AAW35840.1| prolyl-tRNA synthetase [Campylobacter jejuni RM1221]
          Length = 569

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 112/271 (41%), Positives = 159/271 (58%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAA--- 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                    E+  A YA+     N K  DSL
Sbjct: 238 KRAKKTCQDERPEANYASKFHTPNIKTIDSL 268



 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 108/223 (48%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 347 DFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKEGDCCVKCGAKLKQS 406

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A   E+SHD KG I
Sbjct: 407 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVATEASHDEKGCI 466

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +    +L+G
Sbjct: 467 WNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMNDFELMG 526

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  ++VG K +  +++E+  R   I+E +  +E++     + 
Sbjct: 527 FPYALVVG-KGLEKNEIELIQREGLIKELIKTDELMEILKKKV 568


>gi|154508918|ref|ZP_02044560.1| hypothetical protein ACTODO_01429 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798552|gb|EDN80972.1| hypothetical protein ACTODO_01429 [Actinomyces odontolyticus ATCC
           17982]
          Length = 677

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/450 (15%), Positives = 144/450 (32%), Gaps = 42/450 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L +    +   G+  + P G      + + + +     G   
Sbjct: 245 RIKEAERRDHRRLGAELDLYS-FPEEIGPGLVVFHPKGGILRHEIESYVTDRHKAAGFDF 303

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEVMTD 116
           +  P +    L+  SG    Y   M                 +  +       +  +   
Sbjct: 304 VHTPEISKGGLFHTSGHLPYYADTMFPPMLVDEERDEDGNVTKAGQEYYLKAMNCPMHNL 363

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP  FY++   +R E      G+ R R F   D++++    + S+    
Sbjct: 364 IFRSRGRSYRELPLRFYELGHDYRYEKSGVVHGLTRMRGFTQDDSHTYCTPEQASEE-IR 422

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                +L I    GLK   +   +    G    +FI   +                  + 
Sbjct: 423 TQIEFFLSILSAFGLKDFYLELSTRDEDGKKKDKFIGSDED-----------WAAATKAL 471

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                             A Y       + ++ D++    ++S    +    F    ++ 
Sbjct: 472 EDACAATGLDLVPDPGGAAFYGPKV---SVQVKDAIGRTWQMSTIQYD----FNQPDRFD 524

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
           L  +A       +   V + S  +G++     V+    +     +P  ++P ++ LI + 
Sbjct: 525 LEYTAA---DGSRQRPVMIHSAKLGSVERFIGVLT---EHYAGAFPAWLSPVQVRLIPVA 578

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +      + + A+L + G  V  D   ++ G +   A     P  +I G + V    
Sbjct: 579 ---EAFDGYVKDVAAKLRERGVRVETDLSDDRFGKKIRNASKDKIPFTLIAGGEDVEAGA 635

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  + R       ++++  +          
Sbjct: 636 VSFRLRDGSQHNGVAVDRAVELIVSHIEQR 665


>gi|288818560|ref|YP_003432908.1| prolyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288787960|dbj|BAI69707.1| prolyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308752150|gb|ADO45633.1| prolyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
          Length = 569

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 112/253 (44%), Positives = 154/253 (60%), Gaps = 1/253 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S YF    +E P DAE  SHK +L+ G I Q + GIY++ P G + L  +  I+R+E
Sbjct: 1   MRWSTYFWYTSKEEPADAEAPSHKYLLKGGFIKQVASGIYAFTPAGYRVLKKIENIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L  A+LW E+GR+D YG+E+  L DR+ +    GPTHEE +TD+ R+
Sbjct: 61  MDRSGAQELLLTVLNPAELWRETGRWDLYGRELFTLKDRHGRDYCLGPTHEEEITDMVRT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LPF  YQIQ+KFRDE RPRFG++R REF+MKDAYSFD     +  SY  M  +
Sbjct: 121 FVNSYRQLPFILYQIQVKFRDEKRPRFGLIRGREFIMKDAYSFDTDEFSALMSYETMKFA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF +L LK++ + A  G IGG  SHEF++L D GE +V   +    +   +E    +
Sbjct: 181 YERIFKKLRLKTLMVEASVGAIGGMSSHEFVILTDYGEARVAYCESC-GYSANAEIVKLN 239

Query: 241 DIISLNSIVEQWT 253
                     Q T
Sbjct: 240 KGKEEEEEERQLT 252



 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 71/194 (36%), Positives = 108/194 (55%), Gaps = 3/194 (1%)

Query: 256 YAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           Y    DV      D  P+       ++G+E+GHIF  GT+YSLPM A +K   G+D  + 
Sbjct: 377 YGEFFDVAQVVEKDPCPKCGAPLKVSKGLELGHIFLLGTRYSLPMKAFYKDQQGEDKPIY 436

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R ++A++E   D  GI WP  VAPF++++I +   D   +   EKIY +  
Sbjct: 437 MGCYGIGISRCMSAIVEQYSDELGIKWPTVVAPFELNVICLNPSDAEQKTVAEKIYYQAQ 496

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           ++G DV +DD     G +FA ADL GFP +++VG K   + KVE++ R TG + D+ +E+
Sbjct: 497 EMGLDVIYDDREASAGFKFADADLCGFPYRIVVGKKT-KEGKVELQKRHTGEKLDVPIED 555

Query: 434 VINYASHRFSNNRP 447
            +         ++ 
Sbjct: 556 AVRIVKEFVDKDKE 569


>gi|194477315|ref|YP_002049494.1| Threonyl-tRNA synthetase, class IIa [Paulinella chromatophora]
 gi|171192322|gb|ACB43284.1| Threonyl-tRNA synthetase, class IIa [Paulinella chromatophora]
          Length = 599

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 140/445 (31%), Gaps = 43/445 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +    +E   RD       L L + +  +   G+  W P G +    +    R+     G
Sbjct: 188 YKRRKKEALRRDHRRLGTDLDLFS-IEDEAGSGLVFWHPNGARIRLLIEDFWRQSHLEAG 246

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +    LW  SG  D Y + M      +++     P +       + S ++SY
Sbjct: 247 YELLYTPHIADIRLWKTSGHLDFYSESMFSPMQVDEREYQLKPMNCPFHVLTYASKLRSY 306

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  + ++   +R E      G+MR R F   DA+ F L  +             L +
Sbjct: 307 RELPIRWAELGTVYRYERPGVMHGLMRVRGFTQDDAHIFCLPEQIGSEVLE-----VLNL 361

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             R+       +             + +   T   +     D  D          +    
Sbjct: 362 TERILSAFDFTK-------------YEINLSTRPEKFIGGDDVWDLATNGLVEALNAKNW 408

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D++    + S   ++    F    ++    +  + G
Sbjct: 409 NYKIDEGGGAFYGPKIDL---KIKDAIGRTWQCSTIQLD----FNLPERF----NIEYVG 457

Query: 305 ADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           +DG      M    I     R    +IES                               
Sbjct: 458 SDGSRQRPIMIHRAIFGSLERFFGVMIESCAGDFPFWLAPEQIRLLPVT-------DEVI 510

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E++ ++L   G     D  G+++G      +    P+  +VG+K        ++ R 
Sbjct: 511 TYAEELLSQLKIAGVRASIDRTGDRLGKLIRNGEQKKIPILAVVGAKEAEVGGASLRSRY 570

Query: 423 TGIREDMSLEEVINYASHRFSNNRP 447
            G    ++   ++  A+   +N + 
Sbjct: 571 EGELGLVNAYNLVQTAT--LANCKQ 593


>gi|331701343|ref|YP_004398302.1| Prolyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
 gi|329128686|gb|AEB73239.1| Prolyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
          Length = 569

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 108/251 (43%), Positives = 153/251 (60%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P+ AE  SH++++R G I Q S G+Y++LPL  + L+ +  IIR+E
Sbjct: 1   MKQSQMLIPTLKETPKGAEALSHQMLVRGGYIRQISAGMYAYLPLAYRVLNKIETIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +T A EM +P +  ADLW ESGRYD+YG E+ +  +R++   I GPTHEE  T + R 
Sbjct: 61  MEKTSAHEMLMPDILPADLWKESGRYDTYGPELFKFKNRHETDFILGPTHEETFTALIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPR+G++RSREF+MKDAYSF    E    +YN M  +
Sbjct: 121 SIKSYKQLPLVLYQIQNKYRDENRPRYGLLRSREFIMKDAYSFATNDEDLDKTYNAMEQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP-IPSENTDF 239
           Y  IF R+GLK   +  + G +GG  S EF  +A  GE  +  S +   F  +    +  
Sbjct: 181 YRNIFDRIGLKYKVIIGDGGAMGGSDSKEFSAMAAVGEDTIVYSDESDYFANLEMAKSKV 240

Query: 240 DDIISLNSIVE 250
           DD  S     +
Sbjct: 241 DDQPSTEPEAD 251



 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 97/173 (56%), Gaps = 1/173 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            +      RGIE+GHIF  GT+YS  + A     +G+   V MGSYGIG  R+++A+ E 
Sbjct: 396 GKGTLKFTRGIEIGHIFKLGTRYSKSLKANVLDENGRAVPVIMGSYGIGVSRLLSAISEQ 455

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           + D  G++WP +VAPF + +I I A   V  D   +I A+L+     V  DD  E+ G +
Sbjct: 456 NADENGLVWPKAVAPFDVHVIPINAKKAVQMDLAHQIEAQLTADQLQVLVDDRKERAGVK 515

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           FA +DL+G PL+V +G K   +  VEIK R TG   ++++ E+ +       N
Sbjct: 516 FADSDLMGIPLRVTIGKK-AEEGIVEIKIRKTGETVEVNVTELSDTIKKMLKN 567


>gi|302537254|ref|ZP_07289596.1| prolyl-tRNA synthetase [Streptomyces sp. C]
 gi|302446149|gb|EFL17965.1| prolyl-tRNA synthetase [Streptomyces sp. C]
          Length = 570

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 105/238 (44%), Positives = 144/238 (60%), Gaps = 1/238 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+E+P DAE  SH+L++R G + + S G+++WLPLG+K LDNV+ I+REE 
Sbjct: 13  RMSRLMAKTLREDPADAETLSHRLLVRAGYVRRSSAGVWTWLPLGKKVLDNVSRIVREEM 72

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR+  YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 73  DAIGAQEVLLPALLPKEPYEVSGRWSEYGDLLFRLKDRKGADYLLGPTHEEIFTLVVKDQ 132

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD++ EG   SY     +Y
Sbjct: 133 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDVSDEGLAESYRLHREAY 192

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +RIF RLGL    + A SG +GG  S EF+  A  GE   F      D+   +E   F
Sbjct: 193 VRIFERLGLDHRIVSAVSGAMGGSASEEFLAPAGAGE-DTFADCPSCDYAANTEAVTF 249



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 80/181 (44%), Gaps = 6/181 (3%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           DV   +  D  P         R IE+GHIF  G KY+        G +GK   V MGSYG
Sbjct: 392 DVVVVEPGDPCPACGAGLKLDRAIEIGHIFQLGRKYADAFGLDVLGKEGKPVRVTMGSYG 451

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R VAA+ E + D +G+ WP +VAP  + ++       +               G  
Sbjct: 452 IGVSRAVAALAEQTADERGLRWPAAVAPADVHVVAAGKAVPLALAEEAAAALA--AAGRR 509

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V  DD  G   G +   A+L+G P  ++ G +      VE++ R  G RE++ L E +  
Sbjct: 510 VLLDDRPGLSPGVKLTDAELIGVPWILVAGRRSAE-GVVELQDRAAGTREELPLTEALAR 568

Query: 438 A 438
            
Sbjct: 569 L 569


>gi|205355399|ref|ZP_03222170.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346633|gb|EDZ33265.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 569

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 112/271 (41%), Positives = 159/271 (58%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAA--- 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                    E+  A YA+     N K  DSL
Sbjct: 238 KRAKKTCQDERPEANYASKFHTPNIKTIDSL 268



 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 109/223 (48%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 347 DFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKEGDCCVKCGAKLKQS 406

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE+SHD KG I
Sbjct: 407 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEASHDEKGCI 466

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +    +L+G
Sbjct: 467 WNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMNDFELMG 526

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  ++VG K +  +++E+  R   I+E +  +E++     + 
Sbjct: 527 FPYALVVG-KGLEKNEIELIQREGLIKELIKTDELMEILKKKV 568


>gi|220912189|ref|YP_002487498.1| prolyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
 gi|219859067|gb|ACL39409.1| prolyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
          Length = 599

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 99/238 (41%), Positives = 139/238 (58%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ FL  L+E+P DAE+ASHKL++R G I + + GIY+WLPLG   L  V  +IREE  
Sbjct: 1   MSQLFLRTLREDPVDAEVASHKLLVRAGYIRRAAPGIYTWLPLGLSVLRKVEQVIREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  + R+  YG+ + RL DR     +  PTHEE+ T + +   
Sbjct: 61  AIGAQEVHFPALLPREPYEATNRWTEYGEGLFRLQDRKGADYLLAPTHEEMFTLLVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP + YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G   SY     +YL
Sbjct: 121 SSYKDLPLSLYQIQNKYRDEARPRAGLLRGREFIMKDSYSFDVDDAGLDASYAAHRSAYL 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +IF RLGL  +P+ A +G +GG  S EF+   + GE     S       + +  T   
Sbjct: 181 KIFERLGLDVVPVAATAGAMGGSRSEEFLFPTEIGEDTFVRSAAGYAANVEAVTTVVP 238



 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/191 (34%), Positives = 102/191 (53%), Gaps = 5/191 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              +    +  D  P+      +ARGIE+GHIF  G KY+  +       +GK   V MG
Sbjct: 411 GVIECTEVRAGDPAPDGSGPLETARGIEMGHIFQLGRKYAAALDLKVLDQNGKQVTVTMG 470

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R VAA+ E++HD KG+ WP +VAP  + ++ +    +    A E++   L   
Sbjct: 471 SYGVGVTRAVAALAEANHDAKGLTWPRAVAPADVHVVAVGKG-EDIFAAAEQLSVGLEAA 529

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G DV +DD      G +F  A+LLG P  + VG + + D  VEIK R TG  E++++++ 
Sbjct: 530 GLDVIYDDRFKVSPGVKFGDAELLGVPTILAVG-RGLVDGVVEIKDRRTGEAENVAVDKA 588

Query: 435 INYASHRFSNN 445
           ++Y  +   N+
Sbjct: 589 VDYVVNAVRNS 599


>gi|213691491|ref|YP_002322077.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213522952|gb|ACJ51699.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320457566|dbj|BAJ68187.1| prolyl-tRNA synthase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 604

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 107/284 (37%), Positives = 156/284 (54%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE 
Sbjct: 7   RMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREEI 66

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +  
Sbjct: 67  NGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDM 126

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y
Sbjct: 127 YSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTIDEEGMRKAYYDERGAY 186

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
            RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + + +T    
Sbjct: 187 ERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEALSTPELP 246

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +   S      +   P A T D   E+     P       +  +
Sbjct: 247 EIDASATPAASKEATPDAKTIDNMIERANADHPRTDGREWQASD 290



 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 4/191 (2%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLP 297
           ++ +   ++V           +    +  D  P+        RG+E+G +F  G KYS  
Sbjct: 396 ENEVDYYNLVYGRDFKADGVVEAVEVRHGDMSPDGSGPLSFERGVEIGQVFQLGLKYSKA 455

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +       +GK   V MG YGIG  RV+A + E+ HD  G+ W  SV       +     
Sbjct: 456 LDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLAW-PSVIAPAAVHVVATGK 514

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           D V  +  EK+ + L   G +V +DD  +   G +F  A+L+G PL  +VG  +V+D  +
Sbjct: 515 DAVAFEGAEKLVSELEAKGLEVIYDDRKKVSPGVKFKDAELIGVPLVAVVGRDYVNDGTI 574

Query: 417 EIKHRLTGIRE 427
           E++ R    + 
Sbjct: 575 ELRDRNGENKV 585


>gi|328947096|ref|YP_004364433.1| threonyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
 gi|328447420|gb|AEB13136.1| threonyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
          Length = 585

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 154/447 (34%), Gaps = 45/447 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++ +L+E   RD      +L L    +     G   W P G      +   +RE+  + G
Sbjct: 172 YITMLEEADKRDHRKLGVQLDLF--HLDPEDPGQIFWHPNGWTMYVTLQDYMREKIRKDG 229

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E++ P +    LW  SG +  Y K M  + +   +     P +     +IF S ++SY
Sbjct: 230 YMEVNTPAIMPRSLWERSGHWGHYQKNMF-VTESEKRMFAIKPMNCPGALEIFNSRVRSY 288

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +     R+E      G+MR R F+  DA+      +          +     
Sbjct: 289 KDLPLRLAEFGHCVRNEPSGTLHGIMRVRGFVQDDAHIICTEDQIESEVSKFCRLLLDVY 348

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                 K++ ++  + P       E    A+       C    M++ I            
Sbjct: 349 KDFGFDKNLLVKLSTMPEDHVGDLETWQHAEKAL-AAACKSAGMEYEIQ----------- 396

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D+L    +     ++           +  ++A + G
Sbjct: 397 -----PGEGAFYGPKLEF---TLIDALGRQWQCGTIQLDYQLP------SAERLNAEYIG 442

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           AD + H+   +    +G++     ++  ++ G    W        + +            
Sbjct: 443 ADNQKHHPVMLHRAVLGSLERFLGILIENYAGVFPAWLSFEQVAVVPVAP------EFNA 496

Query: 364 ACEKIYARLSKVGCD--VFWDDMGEQIGSQFAV-ADLLGFPLQVIVGSKFVSDSKVEIKH 420
             EK+   L  +G     + DD   +  ++    +     P  ++VG K   ++ V  + 
Sbjct: 497 YAEKVADELKSLGVRANAYTDDSNMK--NKIKNISTEHRTPYILVVGEKEQGENSVTCRF 554

Query: 421 RLTGI--REDMSLEEVINYASHRFSNN 445
           R +    ++  +L+E  +Y   +   +
Sbjct: 555 RFSSKIPQKTFALKEFEDYVLDKIRTH 581


>gi|297243824|ref|ZP_06927754.1| prolyl-tRNA synthetase [Gardnerella vaginalis AMD]
 gi|296888245|gb|EFH26987.1| prolyl-tRNA synthetase [Gardnerella vaginalis AMD]
          Length = 604

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 107/283 (37%), Positives = 156/283 (55%), Gaps = 2/283 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ FL  L+E+P DA++ S KLM R G I + + G+++WLPLG K L+ V AIIREE N
Sbjct: 1   MSQLFLRTLREDPADADVTSAKLMQRAGYIRKSAPGVWTWLPLGLKVLNKVQAIIREEIN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEEV T + +   
Sbjct: 61  GIGAQEVHFPALLPREPYEATNRWEEYGDNIFRLKDRHEADYLLAPTHEEVFTLLVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+M+D YSF +  +G K +Y +   +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMQDGYSFSIDEDGLKSAYVEERAAYA 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--DFD 240
           RIF+RLG+K + + A SGP+GG  S EF+     GE     +     + + +  T    D
Sbjct: 181 RIFNRLGIKYVIVHAVSGPMGGSDSEEFLAPMPIGEDTFALAPSGKAWNVEALTTPEMSD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
              S     E    P A T +   +   D  P       +  +
Sbjct: 241 VDYSATPAAEALETPDAKTIEALVKVSNDLHPRKDGREWQADD 283



 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 4/207 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLP 297
           +D   + + V           +    +  D  P+        RG+E+G +F  G KYS  
Sbjct: 394 EDGKHVYNAVYGRDFEADGVVEAAQVRDGDMSPDGSGPLSFERGVEIGQVFQLGLKYSKA 453

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +  +    +GK   V MG YGIG  RV+A + E+ HD  G+ WP ++AP ++ ++     
Sbjct: 454 LGLSVLNENGKAVPVWMGCYGIGVSRVIACLAETHHDDAGLAWPMAIAPAQVHVVATG-K 512

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           DQV  DA EK+   LSK G +V +DD      G +F  A+L+G PL  + G   V++  +
Sbjct: 513 DQVAFDAAEKVVEELSKQGIEVIFDDRPKVSPGVKFKDAELVGVPLIAVAGRDTVNNGTI 572

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           EI+ R     E + ++E  +    R  
Sbjct: 573 EIRDRNGSNVEAVPVDEAASRIVKRVK 599


>gi|154487350|ref|ZP_02028757.1| hypothetical protein BIFADO_01200 [Bifidobacterium adolescentis
           L2-32]
 gi|154083868|gb|EDN82913.1| hypothetical protein BIFADO_01200 [Bifidobacterium adolescentis
           L2-32]
          Length = 677

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/459 (14%), Positives = 134/459 (29%), Gaps = 50/459 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLQWYKDSMYPPMRLDEEKDENGNVIKQGFDYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 420

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 421 DEL-KSLLTFVLGLLKDFGLDDFYLELST----------------KDPHKYVGSDEIWEE 463

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +      +            A Y       + +  D++    +VS   ++    F  
Sbjct: 464 ATNTLAEVAKESGLDLVDDPCGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 516

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
             ++       +  ADG       +     G++    AV+   + G    W   V    +
Sbjct: 517 PERF----KLEYIAADGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAPVQVLGV 572

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +              +K  A L +       D   ++ G +   A     P  +IVG +
Sbjct: 573 PVA------DEFAPHLQKFIASLEEETVRCEIDLSDDRFGKKIRNASKSKAPFILIVGEE 626

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            ++++ V  + R       + ++E              V
Sbjct: 627 DMNNNAVSFRFRDGSQLNGVPVDEAKANILTVIKKRVQV 665


>gi|307636813|gb|ADN79263.1| threonyl tRNA sythetase [Helicobacter pylori 908]
 gi|325995402|gb|ADZ50807.1| Threonyl-tRNA synthetase [Helicobacter pylori 2018]
          Length = 612

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 152/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F    +          + +   
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSE--VSAILDFTHK 382

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             +    S  M   + P       E                   +    +      +   
Sbjct: 383 IMKAFDFSYEMELSTRPAKSIGDDE-----------------VWEKATNALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 ERNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEELKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|319760484|ref|YP_004124422.1| threonyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039198|gb|ADV33748.1| threonyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
          Length = 411

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 136/434 (31%), Gaps = 40/434 (9%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
             +D    S++L L        + G+  W   G      +   IR++  +    E+  P 
Sbjct: 9   KKKDHRTLSNQLDLF--HTQDDAPGMIFWHKNGWIIFQELKKFIRKKLQQYQYQEVKSPI 66

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +   +LW ++G +D+Y  E + +    ++     P +      IF   IKSY++LP    
Sbjct: 67  MIDQELWKKTGHWDNYY-EHIFITASENRTYCIKPMNCPGHIQIFNYGIKSYKDLPLRIA 125

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR REF   DA+ F    +      N        ++H  G K 
Sbjct: 126 EFGHCHRNEPSGSLHGLMRIREFTQDDAHIFCSIEQIPTEL-NYCIKMMYDVYHTFGFKK 184

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           I ++  + PI                          D                 +   Q 
Sbjct: 185 IIVKLSTRPIKR-----------------IGEDSIWDITEQCLVHILQKKNIEFTYQPQD 227

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    +     L DSL    +     ++    F         + A +   + K    
Sbjct: 228 GAFYGPKIEFI---LLDSLKRAWQCGTVQLD----FSLP----KLLKAKYIDNNNKYQIP 276

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G++     +I   + G    W        +++                I  R
Sbjct: 277 VMIHRAILGSIERFIGLITEEYSGFLPTWLAPTQIVLMNVT------DAQSLYVTNIANR 330

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L      V  D   E+IG +  +  +   P  +I G+  V    + I+        + ++
Sbjct: 331 LKFENFRVQIDLRNEKIGCKIRLHTMHRVPYMIICGNSEVDHGTISIRTFRGRKINNYNI 390

Query: 432 EEVINYASHRFSNN 445
           +  I       +  
Sbjct: 391 DTFIQKLKQEINTY 404


>gi|114659237|ref|XP_510628.2| PREDICTED: threonyl-tRNA synthetase-like 2 [Pan troglodytes]
          Length = 801

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 149/448 (33%), Gaps = 43/448 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 385 KMMRDWEKFQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLTDFIREE 442

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y + M       D      P +      +F  
Sbjct: 443 YHKRDFTEVLSPNMYNSKLWEASGHWQHYSENMFTFEIEKDT-FALKPMNCPGHCLMFAH 501

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 502 RPRSWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLR 560

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  +          
Sbjct: 561 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEIEMWNEAEKQLQNSL 602

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D      +     A Y    D+   K+ D++    + +   ++    F    ++    +
Sbjct: 603 MDFGEPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRF----N 651

Query: 300 ATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+    G     V +    +G++  + A++    +  G  WP  ++P ++ +I +    
Sbjct: 652 LTYMNKVGILGRPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP-- 706

Query: 359 QVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             C     ++ +   + G     D D    +  +   A L  +   ++VG K   D+ V 
Sbjct: 707 -TCEKYALQVSSEFFEEGFMADVDLDHNCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVN 765

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R   I  ++ +   I+   +     
Sbjct: 766 VRTRDNKIHGEILVTSAIDKLKNLKKTR 793


>gi|313665156|ref|YP_004047027.1| threonine--tRNA ligase [Mycoplasma leachii PG50]
 gi|312949904|gb|ADR24500.1| threonine--tRNA ligase [Mycoplasma leachii PG50]
          Length = 639

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 155/436 (35%), Gaps = 37/436 (8%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD  + +  L +  G       G+  WLP G    + +   +R+++     I +  P + 
Sbjct: 236 RDHRLINKTLNIF-GFDQLVGAGLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETPPIG 294

Query: 76  SADLWVESGRYDSYGKEMLRLADR---NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           + +L+  SG +D YG++M +  +    +D+  I  P +      +++   +SYR+LP   
Sbjct: 295 TVELYKTSGHWDHYGEDMFQPFNGGKGSDEQFILRPMNCPHHIAVYKQEQRSYRDLPLRI 354

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +  ++ R E      G+ R R   + D++ F  + +                  R   K
Sbjct: 355 CEHAIQHRFESSGSLTGLERVRGMKLTDSHIFVRSDQIEDEF-------------RSTYK 401

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDIISLNSIVE 250
            I    ++  I  D     + L D  +   F   D   D    S      D+        
Sbjct: 402 LISEVLKTFNIQIDYLS--LSLRDPNDKVKFYKDDLMWDKAESSLEKVLIDLGLKYEKRI 459

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+   ++  +      VS   ++           +               
Sbjct: 460 GDAAFYGPKLDI---QIKTAQNHEITVSTIQLDF-------LMPNKFDLIYIDKDQKLVR 509

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + +    IG      A +    +    + P  +AP ++ +I I    +   +    I+ 
Sbjct: 510 PIMIHRGLIGTYERFIATLL---EQTKGVLPLWLAPKQVEIIPI---SESNLEYANLIHQ 563

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L K       D   E++  +   A     P Q+++G+K V ++ +  +   +  +  +S
Sbjct: 564 KLKKEFIRSHIDLRDERLSYKIRDAQTKKVPYQLVLGNKEVENNTITYRQYGSEKQITIS 623

Query: 431 LEEVINYASHRFSNNR 446
           ++E ++    +  + +
Sbjct: 624 IQEFVDMLKQQIKDKK 639


>gi|76801848|ref|YP_326856.1| threonyl-tRNA synthetase [Natronomonas pharaonis DSM 2160]
 gi|121731906|sp|Q3IRE7|SYT_NATPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|76557713|emb|CAI49296.1| threonine--tRNA ligase [Natronomonas pharaonis DSM 2160]
          Length = 642

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 135/444 (30%), Gaps = 43/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +     +   RD      +L L +  I      G+  + P G+  L  +   + +  +  
Sbjct: 231 FLQRREEAKKRDHRKLGQELDLFS--IPDVTGPGLPLYHPNGKAVLRELEDFVDQLNDDQ 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P L   +LW +SG Y++Y  +M  L D ND+     P +      IF     S
Sbjct: 289 GYEFVETPHLFRTELWKQSGHYENYVDDMF-LLDVNDEEYGLKPMNCPGHATIFNQGNWS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + +    +R E R    G+ R   F + D + F       +   N +      
Sbjct: 348 YRDLPVRYAENGKVYRKEQRGELSGLSRVWAFTIDDGHLFVERDAIEQE-VNVIMDQIEE 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +     L      A                  T   +   S +  +       +  +   
Sbjct: 407 VLDTFDLDYEVALA------------------TRPEKSVGSDEIWEQAQTQLRSVLESSG 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I     A Y    D   E   D+L  N          G               T+ 
Sbjct: 449 MDYDIESGDGAFYGPKIDFAFE---DALGRNW--------DGPTVQLDFNMPERFDLTYT 497

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G D ++H    +     G+      V+    DG    W           + I        
Sbjct: 498 GEDNEEHRPVMIHRALYGSYERFFMVLIEHFDGNFPTW------LAPEQVRILPVSDDNI 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +++  R       V  +D    +G +   A     P  ++VG        V ++ R 
Sbjct: 552 GYAKQLKNRYLD-DFRVEIEDRSWTVGKKIQTAHDDRVPYMLVVGDNEEEAGTVSVRDRF 610

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
              R+D+ +E   ++ +      R
Sbjct: 611 EDERKDVDVETFRDHLASEVEEKR 634


>gi|317176942|dbj|BAJ54731.1| threonyl-tRNA synthetase [Helicobacter pylori F16]
          Length = 612

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 150/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FNDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F                + L  
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCS-----FEQIQSEVSAILDF 379

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                         +  I       + +   T   +        +    +      +   
Sbjct: 380 --------------THKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATNALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 ECNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +   A+    P+ +++G++ +    + I+ R  
Sbjct: 529 FALKLKEELKKRDIFVEVLDKNDSLNKKVRSAEKQKIPMILVLGNEEMESEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|237750837|ref|ZP_04581317.1| threonyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
 gi|229373282|gb|EEO23673.1| threonyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
          Length = 612

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 67/447 (14%), Positives = 145/447 (32%), Gaps = 46/447 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD      ++ L T        G+  WLP G +    +  ++     
Sbjct: 198 LKQYLFQLEEAKKRDHRKLGVEMELFT-FEEDVGAGLPIWLPKGARLRRRIEELLTRALI 256

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                 +  P +  +D+W  SG Y  Y + M      ++      P +      ++++ I
Sbjct: 257 LNEYEPVRCPEILKSDVWKISGHYTHYKENM-YFTTIDEVEYGIKPMNCVGHIKVYQNSI 315

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP  FY+  +  R E      G++R REF   DA+ F    +      N +    
Sbjct: 316 RSYRELPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCRPEQIENE-VNNILRFT 374

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +I +  G         + P                           +    +       
Sbjct: 375 HKIMNAFGFSYEM-ELSTRPEQS-----------------IGEDSVWESATLALQNALAG 416

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 + E   A Y    D+   K+ D++    +     I++              + +
Sbjct: 417 NNISYQVDEGGGAFYGPKIDI---KITDAIGRKWQCGTIQIDMNLP--------ERFNLS 465

Query: 302 FKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   + +    V +    +G+     A++            +       + + I   ++ 
Sbjct: 466 YIDENNEHAMPVMIHRAILGSFERFVAILTEHFG------GEFPFFIAPTQVIIIPINES 519

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                + +   L   G         E +  +   A+    P+  ++G K ++++ V I+ 
Sbjct: 520 HVSMAQNLQNELRLRGIYAELSLKNESLNKKIRTAEKQKVPMIALIGDKELNNNSVSIRD 579

Query: 421 R----LTGI--REDMSLEEVINYASHR 441
           R     +G   + +MS++E +   S+ 
Sbjct: 580 RRMKMDSGENMQYEMSMQEFLEKTSNL 606


>gi|86151603|ref|ZP_01069817.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85841232|gb|EAQ58480.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 569

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 112/271 (41%), Positives = 159/271 (58%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAA--- 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                    E+  A YA+     N K  DSL
Sbjct: 238 KRAKKTCQDERPEANYASKFHTPNIKTIDSL 268



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 347 DFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKEGDCCVKCGAKLKQS 406

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD KG I
Sbjct: 407 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEANHDEKGCI 466

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +    +L+G
Sbjct: 467 WNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMNDFELMG 526

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 527 FPYALVIG-KGLENNEIELIQREDLVKELIKTDELMEILKKKV 568


>gi|317506992|ref|ZP_07964761.1| threonyl-tRNA synthetase [Segniliparus rugosus ATCC BAA-974]
 gi|316254750|gb|EFV14051.1| threonyl-tRNA synthetase [Segniliparus rugosus ATCC BAA-974]
          Length = 683

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/448 (14%), Positives = 130/448 (29%), Gaps = 49/448 (10%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R +    G   ++ 
Sbjct: 257 EAERRDHRKLGTELDLFS-FPDELGSGLPVFHPKGGILRKELEDYSRAKHIEAGYEFVNT 315

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDIFR 119
           P +  + L+  SG  D Y   M                 +  +     P +  +   IFR
Sbjct: 316 PHITKSHLYEVSGHLDWYADGMFPPMHVDAELDADGAVRKPGQDYYLKPMNCPMHNLIFR 375

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP   ++    +R E      G+ R R     DA+ +    +       K  
Sbjct: 376 SRGRSYRELPLRLFEFGSVYRYEKSGVIHGLTRVRGMTQDDAHIYCTRDQMKDEL-AKTL 434

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    GL    +   +                  E +   S +  +    +    
Sbjct: 435 QFVLDLLRDYGLDDFYLELST----------------KDEEKFVGSDEIWEEATRTLAEV 478

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +             A Y       + +  D+L    ++S   ++    F    ++    
Sbjct: 479 AEASGLTLVPDPGGAAFYGPKI---SVQAKDALGRTWQMSTIQLD----FNLPERF---- 527

Query: 299 SATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + G  G     V +     G++     V+    +     +P  ++P +   I +   
Sbjct: 528 GLEYTGPSGHREQPVMIHRALFGSIERFIGVLV---EHYAGAFPAWLSPVQAMGIPVSDD 584

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                         L   G     D   +++  +         P  V+ G++ V    V 
Sbjct: 585 HVPHL---RAFVDSLRAGGVRAHLDTSDDRMQKKIFTHTAQKIPFLVLAGARDVEAGTVS 641

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            + R  G R  + ++E         +  
Sbjct: 642 FRFRDGGQRNAVPVDEAKRLVLDWVARR 669


>gi|189440768|ref|YP_001955849.1| prolyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|189429203|gb|ACD99351.1| Prolyl-tRNA synthetase [Bifidobacterium longum DJO10A]
          Length = 604

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 107/284 (37%), Positives = 156/284 (54%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE 
Sbjct: 7   RMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREEI 66

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +  
Sbjct: 67  NGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDM 126

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y
Sbjct: 127 YSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYYDERGAY 186

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
            RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + + +T    
Sbjct: 187 ERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEALSTPELP 246

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +   S      +   P A T D   E+     P       +  +
Sbjct: 247 EIDASTTPAASKEATPDAKTIDNMIERANADHPRTDGREWQASD 290



 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 4/191 (2%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLP 297
           ++ +   ++V           +    +  D  P+        RG+E+G +F  G KYS  
Sbjct: 396 ENEVDYYNLVYGRDFKADGVVEAVEVRHGDMSPDGSGPLSFERGVEIGQVFQLGLKYSKA 455

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +       +GK   V MG YGIG  RV+A + E+ HD  G+ W  SV       +     
Sbjct: 456 LDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLAW-PSVIAPAAVHVVATGK 514

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           D V  +  EK+ A L   G +V +DD  +   G +F  A+L+G PL  +VG  +V+D  +
Sbjct: 515 DAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELIGVPLVAVVGRDYVNDGTI 574

Query: 417 EIKHRLTGIRE 427
           E++ R    + 
Sbjct: 575 ELRDRNGENKV 585


>gi|312134020|ref|YP_004001359.1| pros [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773326|gb|ADQ02814.1| ProS [Bifidobacterium longum subsp. longum BBMN68]
          Length = 604

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 107/284 (37%), Positives = 156/284 (54%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE 
Sbjct: 7   RMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREEI 66

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +  
Sbjct: 67  NGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDM 126

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y
Sbjct: 127 YSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYYDERGAY 186

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
            RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + + +T    
Sbjct: 187 ERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEALSTPELP 246

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +   S      +   P A T D   E+     P       +  +
Sbjct: 247 EIDASTTPAASKEATPDAKTIDNMIERANADHPRTDGREWQASD 290



 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 4/191 (2%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLP 297
           ++ +   ++V           +    +  D  P+        RG+E+G +F  G KYS  
Sbjct: 396 ENEVDYYNLVYGRDFKVDGVVEAVEVRHGDMSPDGSGPLSFERGVEIGQVFQLGLKYSKA 455

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +       +GK   V MG YGIG  RV+A + E+ HD  G+ W  SV       +     
Sbjct: 456 LDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLAW-PSVIAPAAVHVVATGK 514

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           D V  +  EK+ A L   G +V +DD  +   G +F  A+L+G PL  +VG  +V+D  +
Sbjct: 515 DAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELIGVPLVAVVGRDYVNDGTI 574

Query: 417 EIKHRLTGIRE 427
           E++ R    + 
Sbjct: 575 ELRDRNGENKV 585


>gi|283955965|ref|ZP_06373455.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792625|gb|EFC31404.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 568

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 113/271 (41%), Positives = 160/271 (59%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAAKRA 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             I      E+  A YA+     N K  DSL
Sbjct: 240 KKI---CQDERPEANYASKFHTPNIKTIDSL 267



 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 346 DFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKEGDCCAKCGAKLKQS 405

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE+SHD KG I
Sbjct: 406 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEASHDEKGCI 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +    +L+G
Sbjct: 466 WNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMNDFELMG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  +++G K + ++++E   R   ++E +  +E++     + 
Sbjct: 526 FPYALVIG-KGLENNEIEFIQREGLVKELIKTDELMEILKKKV 567


>gi|213966110|ref|ZP_03394297.1| threonyl-tRNA synthetase [Corynebacterium amycolatum SK46]
 gi|213951208|gb|EEB62603.1| threonyl-tRNA synthetase [Corynebacterium amycolatum SK46]
          Length = 686

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/455 (14%), Positives = 136/455 (29%), Gaps = 49/455 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   +L+   RD      +L L +    +   G   +   G    + +    R      
Sbjct: 254 EYLDRMLEAEKRDHRRLGSELDLFS-FPDEIGSGFPVFHVKGGIIRNEMEQHSRRRHIEA 312

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND------------KAMIYGPTHEE 112
           G   ++ P +   DL+ +SG  D Y   M      +             +     P +  
Sbjct: 313 GYDFVNTPHVTKGDLFKKSGHLDFYADGMFPPMQLDGEYDEHGNCTKAPQDYYVKPMNCP 372

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSK 171
           +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  +
Sbjct: 373 MHNLIFASRGRSYRELPIRMFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIYC-TEDQLE 431

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                +    + +    GL    +   +                  E +   S +  +  
Sbjct: 432 EELTNVLDFIISLLRDYGLDDFYLELST----------------KDEKKFVGSDEIWEKS 475

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                   D             A Y       + +  D++    ++S   ++    F   
Sbjct: 476 TAILQRVADASGLELVPDPGGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLP 528

Query: 292 TKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++       +   DG       +     G++     V+   + G    W        I 
Sbjct: 529 ERF----ELEYTAPDGTKKRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPEQVVGIP 584

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +         C    E   A+L   G  V  D   +++  +         P  ++ G++ 
Sbjct: 585 VA------DDCIPHLEDFAAQLKSRGIRVHVDTSDDRMQKKIRNHTQAKVPFMILAGARD 638

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +    V  +         +++E+ ++      ++ 
Sbjct: 639 IEAGAVSFRFLDGTQINGVAVEKAVDIICDWVASR 673


>gi|296125160|ref|YP_003632412.1| prolyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
 gi|296016976|gb|ADG70213.1| prolyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
          Length = 578

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 114/251 (45%), Positives = 162/251 (64%), Gaps = 1/251 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+P L+E P DA IAS+KLM+R  +  + S G+YS+LPLG + L  ++ IIREE
Sbjct: 1   MRLSKLFMPTLKEAPSDAIIASNKLMIRAALARKISNGLYSYLPLGVRVLSKISNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G+ E  +P L S +L   SGR++ + KE+ RL DRND  M  GPTHEE  T   ++
Sbjct: 61  MDAIGSNECIMPILVSKELLTPSGRWERFKKELFRLKDRNDVDMAMGPTHEEAFTITAQN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY++LP T YQI  KFRDE+RPRFGV+RS+EF MKDAYSF +T E    +YN M  +
Sbjct: 121 EIQSYKDLPLTLYQIHTKFRDEIRPRFGVIRSKEFTMKDAYSFHITKECLDKTYNDMSRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R+GL ++ ++A+SG +GG+ S EF+VL++ GE  +       D+    E  +  
Sbjct: 181 YTKIFKRMGLDTVSVKADSGAMGGEGSEEFMVLSEVGEETIIFCSKC-DYRANVEKANVK 239

Query: 241 DIISLNSIVEQ 251
               + S  ++
Sbjct: 240 KDEEVKSYTDK 250



 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 2/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D    K  D  PE        +G+E+GHIF  G KY+   +      + K+    MG
Sbjct: 381 VWGDFRTAKEGDKCPECGETLYQKKGLELGHIFKLGDKYTQAFNFKVLDENNKEITPIMG 440

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R +A+VIE ++D KGII+P SVAP++  ++ I    +      E+IY  L+ +
Sbjct: 441 CYGIGVNRALASVIEQNYDDKGIIFPISVAPYEAIVVAIDKEGEESFKKAEEIYNALNAL 500

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +  +DD  E++G +    DL+G P++++VG K +    VE K R +    ++  +E++
Sbjct: 501 KVETMFDDRKERLGVKLNDCDLIGIPMRIMVGKKSLQRGVVEFKLRSSSESIEVKADEIV 560

Query: 436 NYASHRFSN 444
            Y   +   
Sbjct: 561 EYVKAKKEE 569


>gi|308062983|gb|ADO04870.1| threonyl-tRNA synthetase [Helicobacter pylori Sat464]
          Length = 612

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 150/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F                + L  
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCS-----FEQIQSEVSAILDF 379

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                         +  I       + +   T   +        +    +      +   
Sbjct: 380 --------------THKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATNALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 EYNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +   A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEALKKRDIFVEVLDKNDSLNKKVRSAEKQKIPMILVLGNEEVETEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|145511956|ref|XP_001441900.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409161|emb|CAK74503.1| unnamed protein product [Paramecium tetraurelia]
          Length = 609

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 162/441 (36%), Gaps = 46/441 (10%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK F    ++   D         L     ++ + G   +LP G K  + +  +IR+E   
Sbjct: 212 SKLFQEYQKQQECDHRHIGKHQHLFV--FNKLAPGSAFFLPHGTKIYNKLIEMIRKEYRE 269

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L + +LW +SG  D Y + +      +D  M   P +      ++++   
Sbjct: 270 RGYQEVITPQLFNKELWKQSGHLDKYAENIYMT---HDHQMGLKPMNCPGHCLLYKTLQH 326

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY+ LP  F    +  R+E+     G+ R R+F   DA+ F    +  +           
Sbjct: 327 SYKELPIRFADFGVLHRNEVHGTLTGLTRVRKFTQDDAHIFCTIEQIQQE-IKNTLDFLS 385

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           R++ R G     +   + P                  +        D           D 
Sbjct: 386 RVYGRFGFT-WELTLSTRP-----------------DKYIGDLQIWDEAERQLRIALSD- 426

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
            +  +      A Y    DV            +  + +  + G I             T+
Sbjct: 427 -TQYTENPGDGAFYGPKIDVLI----------RDHNQKQHQCGTI-QLDFNLPERFDLTY 474

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + K    V +    +G++  + A++    +     WP  ++P ++ +I +    ++ 
Sbjct: 475 HHENDKFSRPVMIHRAILGSIERMMAILT---EQYNGKWPFWLSPRQVMIIPV---SEIS 528

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   ++IY +L K+G +V  +D  + +G +    ++L F   + VG+K    + V+++ R
Sbjct: 529 KQYAKEIYDQLYKLGFEVELEDTEQTLGKRIRKGEMLHFNYIITVGAKEQESNTVDVRER 588

Query: 422 LTGIR-EDMSLEEVINYASHR 441
               + + M L+E I   +  
Sbjct: 589 GDNHKHQSMKLDEFITKINQL 609


>gi|288802831|ref|ZP_06408268.1| threonine--tRNA ligase [Prevotella melaninogenica D18]
 gi|288334648|gb|EFC73086.1| threonine--tRNA ligase [Prevotella melaninogenica D18]
          Length = 649

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 154/444 (34%), Gaps = 39/444 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R       
Sbjct: 233 YLEMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQELLRRLLRPYN 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             E+  P +   +L+V SG Y  YGK+  +       D+  +  P +     +I+    +
Sbjct: 292 YQEVITPGIGGKNLYVTSGHYAHYGKDAFQPIHTPEEDEEYMLKPMNCPHHCEIYAYKPR 351

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    +    FR E      G+ R R F   DA+ F   P+  K  +       L
Sbjct: 352 SYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIFVR-PDQVKAEFENNIDIIL 410

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           ++F   G  +   +                  D  + + +   D +     +   +    
Sbjct: 411 KVFKTFGFDNYEAQISLR--------------DPEDKEKYIGSDEVWEESEAAIKEACAE 456

Query: 243 ISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             LN+ VE    A Y    D     + D++    ++    ++      F           
Sbjct: 457 KGLNARVELGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLPNRF--------KLE 505

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +     G++    AV+     G   +W           + I    + 
Sbjct: 506 YTAEDNSKKTPVMVHRAPFGSLERFTAVLIEHTAGHFPLW------LTPDQVAILPISEK 559

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+ A           DD  E+IG +    +L   P  VIVG K  ++  V ++ 
Sbjct: 560 YNDYAQKVKAYFDAHDVRSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEAAEGLVSMRQ 619

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           +  G +  M++E      ++  + 
Sbjct: 620 QGGGEQATMTMEAFAERINNEVAE 643


>gi|86153499|ref|ZP_01071703.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85843225|gb|EAQ60436.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 569

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 112/271 (41%), Positives = 159/271 (58%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAA--- 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                    E+  A YA+     N K  DSL
Sbjct: 238 KRAKKTCQDERPEANYASKFHTPNIKTIDSL 268



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 347 DFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKEGDCCVKCGAKLKQS 406

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD KG I
Sbjct: 407 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEANHDEKGCI 466

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +    +L+G
Sbjct: 467 WNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMNDFELMG 526

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 527 FPYALVIG-KGLENNEIELIQREDLVKELIKTDELMEILKKKV 568


>gi|261880448|ref|ZP_06006875.1| threonine-tRNA ligase [Prevotella bergensis DSM 17361]
 gi|270332871|gb|EFA43657.1| threonine-tRNA ligase [Prevotella bergensis DSM 17361]
          Length = 521

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 143/444 (32%), Gaps = 36/444 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y L + +   RD      ++ L      +  KG+  WLP G +    +  ++R+     
Sbjct: 103 EYLLMLEEAKKRDHRKIGKEMELFM-FSERVGKGLPIWLPKGTQLRLRLQELLRKLLKPY 161

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + S +L+V SG Y  YGK+  +       D+  +  P +     +I+    
Sbjct: 162 NYQEVIAPGIGSKNLYVTSGHYAHYGKDAFQPIRTPEEDEEYMLKPMNCPHHCEIYARKP 221

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     +  +    
Sbjct: 222 RSYKDLPLRIAEFGTVMRYEKSGELHGLTRVRSFTQDDAHIFVRPEQVKAE-FENVIDII 280

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            ++F   G  +   +                       +   S +  +    +      +
Sbjct: 281 QKVFAIFGFDNYEAQISLRD-------------PKDTDKYIGSDEIWEESQNAIREACQE 327

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                       A Y    D     + D++    ++    ++                  
Sbjct: 328 KGMKAREEIGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFKLE 376

Query: 302 FKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D      V +     G++    AV+     G   +W           + I    + 
Sbjct: 377 YTAEDNSKQVPVMIHRAPFGSLERFTAVLIEHTAGHFPLW------LTPDQVAILPISEK 430

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++           + DD  E+IG +    +L   P  VIVG K  ++  V ++ 
Sbjct: 431 FNDYALEVKKHFDANDVRAYIDDRNEKIGRKIRDNELKRVPYMVIVGEKEANEGLVSMRK 490

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           +  G +  M + + I       ++
Sbjct: 491 QGGGEQASMKITDFIQRIKDEVAD 514


>gi|291457352|ref|ZP_06596742.1| proline--tRNA ligase [Bifidobacterium breve DSM 20213]
 gi|291381187|gb|EFE88705.1| proline--tRNA ligase [Bifidobacterium breve DSM 20213]
          Length = 597

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 107/283 (37%), Positives = 154/283 (54%), Gaps = 2/283 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG K L+ +  IIREE N
Sbjct: 1   MSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLKVLNKIEDIIREEIN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +   
Sbjct: 61  GIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTIDEEGMRKAYYDERGAYE 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF--D 240
           RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + +  T    +
Sbjct: 181 RIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEALTTPELPE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
              S      +  AP A T D   E+     P       +  +
Sbjct: 241 VDASNTPAASKEAAPDAKTIDNMIERANADHPRTDGREWQASD 283



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 4/207 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLP 297
           ++ +   ++V           +    +  D  P+        RG+E+G +F  G KYS  
Sbjct: 389 ENEVDYYNLVYGRDFKADGVVEAVEVRHGDMSPDGSGPLSFERGVEIGQVFQLGLKYSKA 448

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +       +GK   V MG YGIG  RV+A + E+ HD  G+ W  SV       +     
Sbjct: 449 LDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLAW-PSVIAPAAVHVVATGK 507

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           D+   +  EK+ A L   G +V +DD  +   G +F  A+L+G PL  +VG  +V+D  +
Sbjct: 508 DEKAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELIGVPLVAVVGRDYVNDGTI 567

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           EI+ R    +  +   E     + RF+
Sbjct: 568 EIRDRNGENKVAVPAAEAAGTLADRFA 594


>gi|148925913|ref|ZP_01809600.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844899|gb|EDK22003.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 576

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 112/271 (41%), Positives = 159/271 (58%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 9   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 69  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 129 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 189 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAA--- 244

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                    E+  A YA+     N K  DSL
Sbjct: 245 KRAKKTCQDERPEANYASKFHTPNIKTIDSL 275



 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 108/223 (48%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 354 DFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKEGDCCVKCGAKLKQS 413

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A   E+SHD KG I
Sbjct: 414 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVATEASHDEKGCI 473

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +    +L+G
Sbjct: 474 WNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMNDFELMG 533

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  ++VG K +  +++E+  R   I+E +  +E++     + 
Sbjct: 534 FPYALVVG-KGLEKNEIELIQREGLIKELIKTDELMEILKKKV 575


>gi|73954351|ref|XP_536509.2| PREDICTED: similar to threonyl-tRNA synthetase [Canis familiaris]
          Length = 789

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/453 (15%), Positives = 147/453 (32%), Gaps = 43/453 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 363 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNTLIEFIRSE 420

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 421 YRKRGFQEVVTPNIYNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 479

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 480 RPRSWRELPLRIADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAIEQIEDE-IKGCLD 538

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E    A+                        
Sbjct: 539 FLRTVYSIFGFSFKLN-LSTRPEKYLGDIEVWNQAEK-----------------QLENSL 580

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    +++L   
Sbjct: 581 NEFGEKWELNPGDGAFYGPKIDI---QIKDAIGRFHQCATIQLD----FQLPIRFNLTFV 633

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIE------SSHDGKGIIWPDSVAPFKISLIN 353
           +     D K   V +    +G++  + A++                 P  ++P ++ ++ 
Sbjct: 634 SH--DGDDKKRPVIVHRAILGSVERMIAILTENYGGKWWFKASSGTMPFWLSPRQVMVVP 691

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           +      C +  +K+  +       V  D D G  +  +   A L  +   +++G K  +
Sbjct: 692 VGP---TCDEYAQKVRQQFHDAKFMVDIDLDPGCTLNKKIRNAQLAQYNFILVIGEKEKA 748

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              V I+ R   +  + ++ E I        + 
Sbjct: 749 SGTVNIRTRDNKVHGERTILETIERLQQLKQSR 781


>gi|227892604|ref|ZP_04010409.1| prolyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
 gi|227865589|gb|EEJ73010.1| prolyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
          Length = 565

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 108/265 (40%), Positives = 147/265 (55%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L    AII +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEAIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDRINVPEMIMPHLLPATLWQESGRYKKYGPEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKRIFKRAGVSVHPVIADSGTMGGKNSTEFQAPAAVGEDTIAMNETGTYAANLEMAKSID 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                    ++ T       D   +
Sbjct: 241 TFKQEPEEAKELTKVATPDCDTIEK 265



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 96/192 (50%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFADLRTANEGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAK 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++A +E      G+ WP  +APF I ++ +K +     +  EK+  
Sbjct: 435 PVIMGSYGIGVTRMLSAAVEQHLTEHGVAWPKEIAPFSIHIVQMKMNKDDQTELAEKLEK 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           + S    DV +DD  E+ G +FA ADL+G P+++ VG K  +D  VE+K        +MS
Sbjct: 495 KFSDK-YDVLYDDRKERAGVKFADADLVGAPIRITVGKK-AADGIVEVKRPTDEKATEMS 552

Query: 431 LEEVINYASHRF 442
           ++E+  + +   
Sbjct: 553 IDELDKFVNQEL 564


>gi|302346317|ref|YP_003814615.1| threonine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
 gi|302150675|gb|ADK96936.1| threonine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
          Length = 649

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 153/444 (34%), Gaps = 39/444 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      ++ L      +  KG+  WLP G +    +  ++R       
Sbjct: 233 YLEMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQELLRRLLRPYN 291

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             E+  P +   +L+V SG Y  YGK+  +       D+  +  P +     +I+    +
Sbjct: 292 YQEVITPGIGGKNLYVTSGHYAHYGKDAFQPIHTPEEDEEYMLKPMNCPHHCEIYAHKPR 351

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP    +    FR E      G+ R R F   DA+ F   P+  K  +       L
Sbjct: 352 SYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIFVR-PDQVKAEFENNIDIIL 410

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           ++F   G  +   +                  D  + + +   D +     +   +    
Sbjct: 411 KVFKTFGFDNYEAQISLR--------------DPEDKEKYIGSDEVWEESEAAIKEACAE 456

Query: 243 ISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             LN+ VE    A Y    D     + D++    ++    ++      F           
Sbjct: 457 KGLNARVELGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLPNRF--------KLE 505

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +     G++    AV+     G   +W           + I    + 
Sbjct: 506 YTAEDNSKKTPVMVHRAPFGSLERFTAVLIEHTAGHFPLW------LTPDQVAILPISEK 559

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   K+ A           DD  E+IG +    +L   P  VIVG K  ++  V ++ 
Sbjct: 560 YNDYARKVKAYFDAHDVRSIMDDRNEKIGRKIRDNELKRVPYMVIVGEKEAAEGLVSMRQ 619

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           +  G +  M++E      ++  + 
Sbjct: 620 QGGGEQATMTMEAFAERINNEVAE 643


>gi|114659235|ref|XP_001144545.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic isoform
           2 [Pan troglodytes]
          Length = 802

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 150/447 (33%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 385 KMMRDWEKFQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLTDFIREE 442

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y + M       D      P +      +F  
Sbjct: 443 YHKRDFTEVLSPNMYNSKLWEASGHWQHYSENMFTFEIEKDT-FALKPMNCPGHCLMFAH 501

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 502 RPRSWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLR 560

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  +          
Sbjct: 561 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEIEMWNEAEKQLQNSL 602

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 603 MDFGEPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 655

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 656 SK--DGDDKKRPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP--- 707

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C     ++ +   + G     D D    +  +   A L  +   ++VG K   D+ V +
Sbjct: 708 TCEKYALQVSSEFFEEGFMADVDLDHNCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNV 767

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   I  ++ +   I+   +     
Sbjct: 768 RTRDNKIHGEILVTSAIDKLKNLKKTR 794


>gi|34482934|emb|CAE09933.1| THREONYL-TRNA SYNTHETASE [Wolinella succinogenes]
          Length = 536

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 149/441 (33%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      ++ L          G+  WLP G +    + A++ E   R  
Sbjct: 131 YLHQMEEAKKRDHRKVGTEMGLFI-FDEDVGAGLPIWLPAGARLRRRLEAMLTEAHIRRN 189

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +DLW  SG Y +Y + M      ++      P +      ++ S ++SY
Sbjct: 190 YEPVRGPEILKSDLWKISGHYQNYKENM-YFTKIDEVEYGIKPMNCVGHIKVYGSGVRSY 248

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  FY+  +  R E      G++R REF   DA+ F    +      + +     +I
Sbjct: 249 RELPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCRPEQIKDEVVDIVH-FVDKI 307

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G                          T   +    +   +    +     +    
Sbjct: 308 MSAFGFNYEMEI------------------STRPEKSIGDEAIWEKGTQALKEALEAQGL 349

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D++    +     I++                 +  
Sbjct: 350 QYGIDEGGGAFYGPKIDI---KITDAIGRKWQCGTVQIDMNLP--------ERFELAYTD 398

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +        +    +G+     A++     G+   +   +AP  ++++ I    +   +
Sbjct: 399 ENNTPQRPVMIHRAILGSFERFVAILTEHFGGEFPFF---IAPTPVAIVPIG---EEQLE 452

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L KVG      D  E +  +    +    P+ V++G + V++ KV I+ R  
Sbjct: 453 YAKHLRLELQKVGVYAEIHDKNETLNKKIRTVEKQRVPMIVVLGEREVNEKKVAIRDRRE 512

Query: 424 GIREDMSLEEVINYASHRFSN 444
             + ++   E I  A  + S 
Sbjct: 513 KRQYELGEAEFIQLAKEKMSE 533


>gi|126659940|ref|ZP_01731064.1| prolyl-tRNA synthetase [Cyanothece sp. CCY0110]
 gi|126618804|gb|EAZ89549.1| prolyl-tRNA synthetase [Cyanothece sp. CCY0110]
          Length = 598

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 109/235 (46%), Positives = 148/235 (62%), Gaps = 4/235 (1%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
                L+E+P +AEI SHKL+LR G I +   GIY++LPL  + L  V+ I+REE N  G
Sbjct: 1   MLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLQKVSQIVREEMNAAG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           A E  +P LQ ++LW ESGR+++Y K    M  L DR ++ +  GPTHEEV+T + +  I
Sbjct: 61  AQECLLPQLQPSELWKESGRWETYTKAEGIMFSLIDRQERELGLGPTHEEVITTVAKDMI 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF+      + SY+ M  +Y 
Sbjct: 121 RSYRQLPVNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFNENEASLQKSYDAMDQAYR 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            I  R GL    + A+SG IGG  S EF++LA+ GE +V  ++D   +    E  
Sbjct: 181 NIISRCGLAYRAVEADSGAIGGSASQEFMILAEAGEDEVLYTEDG-KYAANVEKA 234



 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 113/239 (47%), Gaps = 21/239 (8%)

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             F+  AD     +       DF +P    D                    T+ + +  +
Sbjct: 378 ENFVTGADEINYHIVGGNWNKDFKLPQLVCDI------------------RTAMIGDRAI 419

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D        SARGIEVGHIF  GTKYS  M ATF   +G++  + MG YG+G  R+  A
Sbjct: 420 HDRS--QTLASARGIEVGHIFQLGTKYSEAMGATFTDENGEEKPIVMGCYGVGVSRLAQA 477

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
            +E S+D  GIIWP ++AP+ + +I     D+   +  E +Y  L+K+G +   DD  E+
Sbjct: 478 AVEQSYDKDGIIWPVAIAPYHVIIIVPNIKDKNQIEVAENLYNELNKIGIETMLDDRDER 537

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            G +F  ADL+G P +V+ G + +   KVE+  R +   +++ +  ++    +     +
Sbjct: 538 AGVKFKDADLIGIPYRVVTG-RSLKAGKVEVVTRKSKESQEIEVTNLVETLHNWVEQAK 595


>gi|317508518|ref|ZP_07966185.1| prolyl-tRNA synthetase [Segniliparus rugosus ATCC BAA-974]
 gi|316253209|gb|EFV12612.1| prolyl-tRNA synthetase [Segniliparus rugosus ATCC BAA-974]
          Length = 606

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 100/264 (37%), Positives = 148/264 (56%), Gaps = 7/264 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DAE+ +HKL++R G   + S G+++WLPLG KAL  +  ++REE 
Sbjct: 4   RLSELFLRTLREDPADAEVPNHKLLVRGGYFRRVSPGVFAWLPLGLKALRQIENVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+ +P L     +  S R+  YG  + RL DR     +  PTHEE+   + +  
Sbjct: 64  DGIGGQEILLPALAPRQPYETSNRWTEYGDNLFRLKDRKGGDYLLAPTHEELFALLVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKD+YSFD+   G+K +Y+    +Y
Sbjct: 124 YTSYKDLPVILYQIQTKYRDEERPRAGILRGREFVMKDSYSFDVDEAGNKAAYHAHREAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFD 240
            RIF RLG+  + + A SG +GG  S EF+  +  GE     C +      + +  T   
Sbjct: 184 QRIFDRLGISYVIVAATSGAMGGSASEEFLAESAIGEDTYVRCLESGYAANVEAVTTPVA 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHN 264
           +       V+   AP A T D  +
Sbjct: 244 E------PVDFSGAPEAQTYDTGD 261



 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 93/180 (51%), Gaps = 3/180 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+   K V+ARGIE+GH+F  GTKY+   S    G +GK   + MG
Sbjct: 399 GTIEAAEVREGDPSPDGAGKLVAARGIEIGHVFALGTKYTDAFSVDVLGENGKPARLIMG 458

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+V  + E  HD KG+ WP  VAPF++ +++          A +         
Sbjct: 459 SYGIGVSRLVGVIAEQWHDEKGLRWPPQVAPFQVHVLSTGKGSAEAEAAEQYAAEL-EAH 517

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  DD     G +FA A+LLG P+ V+VG  + S+ KVE+K R  G    +  + V+
Sbjct: 518 GLRVLLDDRKASPGVKFADAELLGAPVIVVVGRDWASEGKVELKERFAGESGSVDADVVV 577


>gi|254778840|ref|YP_003056945.1| threonyl-tRNA synthetase [Helicobacter pylori B38]
 gi|254000751|emb|CAX28675.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Helicobacter pylori B38]
          Length = 612

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 151/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++       G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSRALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSTLHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F    +      + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSE-VSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G         + P       E                   +    +      +   
Sbjct: 384 MQAFGFSYEM-ELSTRPAKSIGDDE-----------------VWEKATDALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 NYKIDEGGGAFYGPKIDI---KITDALRRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 EYNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEELKKHDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|254569696|ref|XP_002491958.1| Threonyl-tRNA synthetase, essential cytoplasmic protein [Pichia
           pastoris GS115]
 gi|238031755|emb|CAY69678.1| Threonyl-tRNA synthetase, essential cytoplasmic protein [Pichia
           pastoris GS115]
 gi|328351547|emb|CCA37946.1| threonyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 712

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 154/445 (34%), Gaps = 42/445 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +  L     ++ S G   WLP G +  + +  ++R E  + G 
Sbjct: 299 LKFLKEAAERDHRRIGREQELF--YFNEMSPGSCFWLPHGTRIYNTLTDLLRTEYRKRGY 356

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + ++ LW  SG + +Y + M       +      P +      +F+S  +SYR
Sbjct: 357 EEVITPNMYNSKLWETSGHWANYKENMFTFEVEKET-FGLKPMNCPGHCLMFKSRERSYR 415

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP+      +  R+E      G+ R R F   DA+ F  T +  +   + +F       
Sbjct: 416 ELPWRVADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFC-TQDQIEDEISNIFDFLKF-- 472

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                           I G    EF +   T   +     +  +          +     
Sbjct: 473 ----------------IYGLFGFEFKMELSTRPEKFVGDIETWNNAEAKLENALNKWGGK 516

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             +     A Y    D+    + D+L    + +   ++    F    ++ L       G 
Sbjct: 517 WEVNPGDGAFYGPKIDIM---ISDALKRWHQCATVQLD----FQLPQRFELEYRTK-DGQ 568

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           D     V +    +G++  + A++    +     WP  ++P ++ ++ +        D  
Sbjct: 569 DDLTRPVMIHRAILGSVERMTAILT---EHFAGKWPFWLSPRQVLIVPVGVK---YFDYA 622

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +++   L  +      D  G  +  +     L  +    IVG +  +D  V +++R    
Sbjct: 623 QQVQQELKGLDLYADVDLSGNTLQKKIRTGQLQRYNFIFIVGEQEQNDKSVNVRNRDIQE 682

Query: 426 RED----MSLEEVINYASHRFSNNR 446
            ++    + L +VI          R
Sbjct: 683 LQNKNEAVPLVDVIPKLLQLRDERR 707


>gi|126277226|ref|XP_001373323.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 806

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 151/447 (33%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD      +  L     H  S G   +LP G    + +   I+EE
Sbjct: 389 KMMKTWEKFQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLMDFIKEE 446

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    E+  P + ++ LW  SG +  Y + M    D   +     P +      +F  
Sbjct: 447 YHRRNFTEVISPNVYNSKLWETSGHWQHYSENMFSF-DIEKETFALKPMNCPGHCLMFAH 505

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P       +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 506 RPRSWREMPIRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCRMEQIEEEM-KGCLE 564

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E    A+                        
Sbjct: 565 FLQSVYTVFGFSFQLN-LSTRPENFLGEIEIWNQAE-----------------EQLQNSL 606

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 607 KEFGKPWKLNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 659

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +    +D K   V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 660 SK--DSDDKTRPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPCQVMVIPVGP--- 711

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C +   +I     + G     D D    +  +   A L  +   ++VG K   ++ V +
Sbjct: 712 TCEEYALQISKEFFEAGFMADVDLDQSCTLNKKIRNAQLAQYNFILVVGEKEKLNNAVNV 771

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   I  + S+   I+       + 
Sbjct: 772 RTRDNKIHGEASVVSTISKLKKLKESR 798


>gi|77735697|ref|NP_001029542.1| threonyl-tRNA synthetase, cytoplasmic [Bos taurus]
 gi|110287979|sp|Q3ZBV8|SYTC_BOVIN RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73586669|gb|AAI03083.1| Threonyl-tRNA synthetase [Bos taurus]
 gi|296475710|gb|DAA17825.1| threonyl-tRNA synthetase [Bos taurus]
          Length = 723

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 151/447 (33%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNTLIEFIRSE 363

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LWV SG ++ Y + M       +      P +      +F  
Sbjct: 364 YRKRGFQEVVTPNIYNSRLWVTSGHWEHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 422

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 423 RPRSWRELPLRVADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 481

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E    A+                        
Sbjct: 482 FLRTVYSIFGFSFKLN-LSTRPEKFLGDIEVWNQAEK-----------------QLENSL 523

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +D      +     A Y    D+   ++ D++    + +   ++    F    +++L   
Sbjct: 524 NDFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRFNLTFV 576

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ ++ +     
Sbjct: 577 SH--DGDDKKKPVIIHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP--- 628

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C +  +K+  +       V  D D G  +  +   A L  +   ++VG K  +   V I
Sbjct: 629 TCDEYAQKVRQQFHNAKFMVDIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKTSGTVNI 688

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   +  + ++ E I        + 
Sbjct: 689 RTRDNKVHGERTISETIERLQQLKHSR 715


>gi|15611183|ref|NP_222834.1| threonyl-tRNA synthetase [Helicobacter pylori J99]
 gi|8928389|sp|Q9ZMV3|SYT_HELPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|4154621|gb|AAD05692.1| THREONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
          Length = 612

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 151/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSQALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F    +      + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSE-VSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G         + P                           +    +      +   
Sbjct: 384 MQAFGFSYEM-ELSTRPAKS-----------------IGDDKVWEKATNALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 EYNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEALKKCDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|317179928|dbj|BAJ57714.1| threonyl-tRNA synthetase [Helicobacter pylori F32]
          Length = 612

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 151/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F    +          + +   
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSE--VSAILDFTHK 382

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             +    +  M   + P                           +    +      +   
Sbjct: 383 IMQAFDFNYEMELSTRPAKS-----------------IGDDKVWEKATNALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 ERNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVESEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|300934571|ref|ZP_07149827.1| threonyl-tRNA synthetase [Corynebacterium resistens DSM 45100]
          Length = 706

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 61/457 (13%), Positives = 134/457 (29%), Gaps = 50/457 (10%)

Query: 5   KYFLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +  +L +   RD      +L L +    +   G   + P G      +    R     
Sbjct: 271 ESYQEMLAEAEKRDHRRLGAELDLFS-FPDEIGSGFPVFHPNGGIVRLEMEEHSRRRHIE 329

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND------------KAMIYGPTHE 111
           +G   ++ P +   DL+ +SG  D Y + M      +             +     P + 
Sbjct: 330 SGYSFVNTPHITKGDLFQKSGHLDFYAEGMFPPMQLDGEVDAEGNVTKQAQDYYAKPMNC 389

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  
Sbjct: 390 PMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIYC-TEDQL 448

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           +     +    + +    GL    +   +                    +   S +  + 
Sbjct: 449 EQELTTVLEFIISLLRDYGLDDFYLELST----------------KDPNKFVGSDEIWER 492

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                     +            A Y       + +  D++    ++S   ++    F  
Sbjct: 493 STEILQRVATNSGLELVPDPAGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNL 545

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
             ++    +  +   DG       +     G++     V+   + G    W        I
Sbjct: 546 PERF----NLEYTAPDGSKQRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVVGI 601

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +           +  + + + L K G     D   +++  +         P  ++VG +
Sbjct: 602 PVA------DEFNEYLDSVASDLRKRGIRAEVDTSDDRMQKKIRTHTTGKVPFMLLVGGR 655

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            V    V  +         +  +  +   +      R
Sbjct: 656 DVEADAVSFRFLDGSQVNGVPRDRAVELIAQWIGERR 692


>gi|213692035|ref|YP_002322621.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|254783509|sp|B7GR13|SYT_BIFLI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|213523496|gb|ACJ52243.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320458147|dbj|BAJ68768.1| threonyl-tRNA synthase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 677

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 59/461 (12%), Positives = 130/461 (28%), Gaps = 54/461 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPAMHLDEEYDADGNVTKPGFDYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 420

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 421 DEL-TSLLTFVLNLLKDFGLSDFYLELST----------------KDPDKYVGSDEIWEE 463

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +     +             A Y       + +  D++    +VS   ++    F  
Sbjct: 464 ATRTLREVAEASHLDLVADPGGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 516

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++       +   DG           +   R +   IE         +  +   +   
Sbjct: 517 PERF----QLEYIAKDGT------HQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAP 566

Query: 351 LINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  +     V  +    +      L         D   ++ G +   A     P  +IVG
Sbjct: 567 VQVLGV--PVADEFAPHLAGFVKSLEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVG 624

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            + ++++ V  + R       + +++         +    V
Sbjct: 625 EEDMNNNAVSFRFRDGSQLNGVPVDKAREQILAVIAKRVQV 665


>gi|322689774|ref|YP_004209508.1| prolyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F]
 gi|322691722|ref|YP_004221292.1| prolyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320456578|dbj|BAJ67200.1| prolyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320461110|dbj|BAJ71730.1| prolyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F]
          Length = 614

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 107/284 (37%), Positives = 156/284 (54%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE 
Sbjct: 17  RMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREEI 76

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +  
Sbjct: 77  NGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDM 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y
Sbjct: 137 YSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYYDERGAY 196

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
            RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + + +T    
Sbjct: 197 ERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEALSTPELP 256

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +   S      +   P A T D   E+     P       +  +
Sbjct: 257 EIDASTTPAASKEATPDAKTIDNMIERANADHPRTDGREWQASD 300



 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 4/191 (2%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLP 297
           ++ +   ++V           +    +  D  P+        RG+E+G +F  G KYS  
Sbjct: 406 ENEVDYYNLVYGRDFKVDGVVEAVEVRHGDMSPDGSGPLSFERGVEIGQVFQLGLKYSKA 465

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +       +GK   V MG YGIG  RV+A + E+ HD  G+ W  SV       +     
Sbjct: 466 LDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLAW-PSVIAPAAVHVVATGK 524

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           D V  +  EK+ A L   G +V +DD  +   G +F  A+L+G PL  +VG  +V+D  +
Sbjct: 525 DAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELIGVPLVAVVGRDYVNDGTI 584

Query: 417 EIKHRLTGIRE 427
           E++ R    + 
Sbjct: 585 ELRDRNGENKV 595


>gi|320105902|ref|YP_004181492.1| prolyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
 gi|319924423|gb|ADV81498.1| prolyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
          Length = 613

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 108/236 (45%), Positives = 146/236 (61%), Gaps = 2/236 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R SK F+P L+E P DA +ASH+++LR G + Q   G+YS+L L  ++++ + AI+REE 
Sbjct: 30  RWSKLFIPTLREAPADAVVASHQILLRAGYVRQLGAGLYSYLFLATRSINKIVAIVREEM 89

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +R G  EM +P L  A++W ESGR+   G  M RL DR    +  G THEEVMT I RS 
Sbjct: 90  DRIG-QEMYLPALNPAEVWQESGRWTGMGDNMFRLKDRKGADLCLGMTHEEVMTSIARSE 148

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SY+ LP  +YQIQ KFRDE RP+ G++R R+F MKD+YSFDL  EG   SY     +Y
Sbjct: 149 IRSYKQLPQIWYQIQTKFRDEPRPKSGLLRVRQFTMKDSYSFDLNEEGLDVSYKLHDEAY 208

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             IF R GL  + + A+SG +GG  S EF+V  + GE  +  S D   +    E  
Sbjct: 209 RCIFTRCGLSFVAVEADSGAMGGSQSQEFMVYTEAGEDLIASSPDGQ-YAANIEKA 263



 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 62/194 (31%), Positives = 87/194 (44%), Gaps = 9/194 (4%)

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           A     NE   D +        + +E+GHIF  G KY+  M A     +GK+    MG Y
Sbjct: 420 ADIRNINEGEPDPITGQPLRLGKAVEIGHIFKLGYKYTESMGARVLDQNGKETMPIMGCY 479

Query: 318 GIGAMRVVAAVIESSHDGK--------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           GIG  R++ A +E S                P S+APF++ +   K  D    +A E I 
Sbjct: 480 GIGIERILTAAMERSAASMGLSDRGDIRYALPASIAPFQVIVTVTKQSDATLAEAGETIA 539

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L   G DV  DD  +  G +F  ADL+G P +V VG K + D  VE+  RLTG   + 
Sbjct: 540 KALDSAGFDVLLDDRDQSAGVKFKDADLIGVPYRVNVGKK-LVDGLVELVDRLTGNTIEC 598

Query: 430 SLEEVINYASHRFS 443
           ++ EV+        
Sbjct: 599 AVNEVVPQLQAAIK 612


>gi|116491012|ref|YP_810556.1| prolyl-tRNA synthetase [Oenococcus oeni PSU-1]
 gi|122276806|sp|Q04F81|SYP_OENOB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116091737|gb|ABJ56891.1| Prolyl-tRNA synthetase [Oenococcus oeni PSU-1]
          Length = 570

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 108/250 (43%), Positives = 152/250 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P  +E P +A++ SH  MLR G I Q + GIY++LPL  + ++ + +IIREE
Sbjct: 1   MKQSKIFIPTEKEVPAEAQVKSHIFMLRAGFIRQVAGGIYAYLPLANRIINKIESIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR  A EM +P +  A+LW ESGR+ +YG +M +L DR+D+  I  PTHEE  T I   
Sbjct: 61  MNRIDANEMLMPEMIPAELWKESGRFYTYGPQMYQLKDRHDREFIMAPTHEETFTKIISD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDELRP+ G++R REF+MKDAYSF    +G   +Y+ +  +
Sbjct: 121 EIKSYKKLPLILYQIQQKFRDELRPKNGLLRGREFIMKDAYSFSSDQKGLDDAYDLIESA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    + A+SG +GG  S EF  +A TGE  +  S             +F 
Sbjct: 181 YKRIFDRVGLDYREIIADSGSMGGKDSAEFQAIAATGEDIIAYSNSGKYAANIEMAEEFF 240

Query: 241 DIISLNSIVE 250
           +    +   +
Sbjct: 241 EKKIPDEDKK 250



 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 1/175 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            + K V  +GIE+GHIF  GT Y+  M    +   GK   + MG YGIG  R+++A+ E 
Sbjct: 397 GKGKLVFTKGIEIGHIFKLGTFYTSKMGGQIQNEKGKLSDIIMGCYGIGISRLLSAIAEQ 456

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D KG IWP +VAPF + LI +   ++   +  ++I   L + G +V  DD  E+ G +
Sbjct: 457 SNDPKGFIWPKAVAPFNVHLITMNTKNESQVNLTKQIDKNLQEAGFEVLVDDRKERPGVK 516

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           FA +DL+G P++V+VG +      VE+K R      D+S + +I +   + +  +
Sbjct: 517 FADSDLIGIPIRVVVGRQ-ADQQIVEVKARGQESTNDVSTDNLIAFLKDKLNELK 570


>gi|167005199|ref|ZP_02270957.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 568

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 112/271 (41%), Positives = 158/271 (58%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR     + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKKNEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAA--- 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                    E+  A YA+     N K  DSL
Sbjct: 237 KRAKKTCQDERPEANYASKFHTPNIKTIDSL 267



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 346 DFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKEGDCCVKCGAKLKQS 405

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD KG I
Sbjct: 406 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEANHDEKGCI 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +    +L+G
Sbjct: 466 WNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMNDFELMG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 526 FPYALVIG-KGLENNEIELIQREDLVKELIKTDELMEILKKKV 567


>gi|283783528|ref|YP_003374282.1| proline--tRNA ligase [Gardnerella vaginalis 409-05]
 gi|283441181|gb|ADB13647.1| proline--tRNA ligase [Gardnerella vaginalis 409-05]
          Length = 610

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 106/284 (37%), Positives = 155/284 (54%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ FL  L+E+P DA++ S KLM R G I + + G+++WLPLG K L+ V AIIR+E 
Sbjct: 7   RMSQLFLRTLREDPADADVTSAKLMQRAGYIRKSAPGVWTWLPLGLKVLNKVQAIIRDEI 66

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L   + +  + R++ YG  + RL DR+    +  PTHEEV T + +  
Sbjct: 67  NGIGAQEVHFPALLPREPYEATNRWEEYGDNIFRLKDRHQADYLLAPTHEEVFTLLVKDM 126

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+M+D YSF +  +G K +Y +   +Y
Sbjct: 127 YSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMQDGYSFSIDEDGLKSAYVEERAAY 186

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--DF 239
            RIF RLG+K + + A SGP+GG  S EF+     GE     +     + + +  T    
Sbjct: 187 ARIFDRLGIKYVIVHAVSGPMGGSDSEEFLAPMPIGEDTFALAPSGKAWNVEALTTPEMQ 246

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           D   S     +    P A T +   +   D  P       +  +
Sbjct: 247 DVDYSATPAAQSLETPDAKTIEALVKVSNDLHPRKDGREWQADD 290



 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 99/208 (47%), Gaps = 4/208 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLP 297
           +D   + + V           +    +  D  P+        RG+E+G +F  G KYS  
Sbjct: 401 EDGKHVYNAVYGRDFEADGVVEAAQVRDGDMSPDGSGPLSFERGVEIGQVFQLGLKYSKA 460

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +  +    +GK   V MG YGIG  RV+A + E+ HD  G+ WP ++AP ++ ++     
Sbjct: 461 LGLSVLNENGKAVPVWMGCYGIGVSRVIACLAETHHDDAGLAWPMAIAPAQVHVVATG-K 519

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           DQV  DA EK+   LSK G +V +DD      G +F  A+L+G PL  + G   V++  +
Sbjct: 520 DQVAFDAAEKVVEELSKQGIEVIFDDRPKVSPGVKFKDAELVGVPLIAVAGRDTVNNGTI 579

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           EI+ R     E + ++E       R S 
Sbjct: 580 EIRDRNGSNVEAVPVDEAAARIVERVSE 607


>gi|311064400|ref|YP_003971125.1| threonyl-tRNA synthetase [Bifidobacterium bifidum PRL2010]
 gi|310866719|gb|ADP36088.1| ThrS Threonyl-tRNA synthetase [Bifidobacterium bifidum PRL2010]
          Length = 676

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 60/461 (13%), Positives = 129/461 (27%), Gaps = 54/461 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPEEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEYDADGNITKPGADYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 420

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 421 DEL-TSLLTFVLNLLKDFGLSDFYLELST----------------KDPDKYVGSDEIWEE 463

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +     +             A Y       + +  D++    +VS   ++    F  
Sbjct: 464 ATRTLREVAEASHLDLVADPGGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 516

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++       +   DG           +   R +   IE         +  +   +   
Sbjct: 517 PERF----QLEYIAKDGT------HQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAP 566

Query: 351 LINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  +     V  +    +      L         D   ++ G +   A     P  +IVG
Sbjct: 567 VQVLGV--PVADEFAPHLAGFVKSLEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVG 624

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            + ++++ V  + R       + ++E              V
Sbjct: 625 EEDMNNNAVSFRFRDGSQLNGVPVDEAREKILAVIKMRAQV 665


>gi|217031884|ref|ZP_03437386.1| hypothetical protein HPB128_3g3 [Helicobacter pylori B128]
 gi|298736935|ref|YP_003729465.1| threonyl-tRNA synthetase [Helicobacter pylori B8]
 gi|216946353|gb|EEC24958.1| hypothetical protein HPB128_3g3 [Helicobacter pylori B128]
 gi|298356129|emb|CBI67001.1| threonyl-tRNA synthetase [Helicobacter pylori B8]
          Length = 612

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 152/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSQALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F    +          + +   
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSE--VSAILDFTHK 382

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             +    S  M   + P       E                   +    +      +   
Sbjct: 383 IMKAFNFSYEMELSTRPTKSIGDDE-----------------VWEKATSALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALRRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 EHNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEELKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QDQYKMPLKEFLNMVESKMQE 609


>gi|113475159|ref|YP_721220.1| threonyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
 gi|110166207|gb|ABG50747.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Trichodesmium
           erythraeum IMS101]
          Length = 608

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/450 (15%), Positives = 156/450 (34%), Gaps = 39/450 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y     +   R+      +L L          G+  W P G    +++   +++EQ 
Sbjct: 188 LTEYKRRKEEALKRNHRKLGKELGLFI-FSDLVGPGLPLWTPKGTMLKNSLKDFLQQEQL 246

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRNDKAMIYGPTHEEVMTD 116
           + G + +  P +   DL+  SG +  Y ++M  +       +  ++  +  P +      
Sbjct: 247 KRGYLPVDTPHIARIDLFKTSGHWQKYKEDMFPMMAEDEQAEALEQGFVLKPMNCPFHIQ 306

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I+++ ++SYR LP    +    +R E     G +       +D     +TPE     +  
Sbjct: 307 IYKNELRSYRELPIRLAEFGTVYRHEKSGELGGLTRVRGFTQDDSHLFVTPEQLDAEFLS 366

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +F  L L++   R                  D    +   S +  +    +  
Sbjct: 367 VVDLTLFVFKSLQLQNFKARLS--------------FRDPNLDKYIGSDEAWEKAEGAIR 412

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              + +   +       A Y    D       D+L    ++    ++             
Sbjct: 413 RAVEKMGMDHFEGIGEAAFYGPKLDFI---FQDALEREWQLGTVQVDYNLP--------E 461

Query: 297 PMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +   DG       +     G++  +  ++    +     +P  +AP ++ L+ + 
Sbjct: 462 RFDLEYVAEDGTRKRPVMIHRAPFGSLERLIGILI---EEYAGDFPVWLAPTQVKLLPVN 518

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     +++  ++ +VG     D   E++G     A+    P+  +VG+K V  + 
Sbjct: 519 ---SEFWPFAQEVAEQMLQVGIRAEVDMSNERLGKLIRNAEKAKIPIMAVVGAKEVESNS 575

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + I+ R TG    + + EVI   +   +N 
Sbjct: 576 LSIRTRSTGELGSIPVMEVIQKMTKAIANY 605


>gi|291456785|ref|ZP_06596175.1| threonine--tRNA ligase [Bifidobacterium breve DSM 20213]
 gi|291382062|gb|EFE89580.1| threonine--tRNA ligase [Bifidobacterium breve DSM 20213]
          Length = 677

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 59/461 (12%), Positives = 130/461 (28%), Gaps = 54/461 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEYDEDGNVTKPGFDYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 420

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 421 DEL-TSLLTFVLNLLKDFGLSDFYLELST----------------KDPDKYVGSDEIWEE 463

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +     +             A Y       + +  D++    +VS   ++    F  
Sbjct: 464 ATRTLREVAEASHLDLVADPGGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 516

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++       +   DG           +   R +   IE         +  +   +   
Sbjct: 517 PERF----QLEYIAKDGT------HQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAP 566

Query: 351 LINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  +     V  +    +      L         D   ++ G +   A     P  +IVG
Sbjct: 567 VQVLGV--PVADEFAPHLAGFVKSLEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVG 624

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            + ++++ V  + R       + +++         +    V
Sbjct: 625 EEDMNNNAVSFRFRDGSQLNGVPVDKAREQILAVIAKRVQV 665


>gi|254382091|ref|ZP_04997453.1| prolyl-tRNA synthetase 1 [Streptomyces sp. Mg1]
 gi|194340998|gb|EDX21964.1| prolyl-tRNA synthetase 1 [Streptomyces sp. Mg1]
          Length = 565

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 108/301 (35%), Positives = 157/301 (52%), Gaps = 17/301 (5%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+E+P DAE  SHKL++R G + + S G+++WLPLG++ LDNV+ ++REE 
Sbjct: 8   RMSRLMAKTLREDPADAETLSHKLLVRAGYVRRSSAGVWTWLPLGKRVLDNVSRVVREEM 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L   + +  SGR+  YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 68  DAIGAQEVLLPALLPKEPYEVSGRWSEYGDLLFRLKDRKGADYLLGPTHEEIFTLVVKDQ 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD++ EG   SY     +Y
Sbjct: 128 CTSYKDLPVMLYQIQTKYRDEARPRSGVLRGREFQMKDSYSFDVSDEGLAESYALHRAAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP---------- 231
            RIF RLGL    + A SG +GG  S EF+  A  GE                       
Sbjct: 188 RRIFERLGLDHRIVSAVSGAMGGSASEEFLAPAAAGEDTFVDCPSCDYAANTEAVTFAAP 247

Query: 232 -------IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                   P++     D  ++ ++      P +AT      K+   +        R +++
Sbjct: 248 AVDGAGHAPAQEIPTPDTPTIEALAAHLGVPASATLKNLLVKVDGEIVAVGVPGDREVDL 307

Query: 285 G 285
           G
Sbjct: 308 G 308



 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 85/182 (46%), Gaps = 6/182 (3%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           DV   +  D  P         R IE+GHIF  G KY+        G +GK   V MGSYG
Sbjct: 387 DVVVVEAGDPCPSCGAGLRLDRAIEIGHIFQLGRKYADAFGLDVLGREGKPVRVTMGSYG 446

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R VAA+ E + D +G+ WP  VAP  + ++       +               G  
Sbjct: 447 IGVSRAVAALAEQTADERGLCWPAEVAPADVHVVAAGKAVPLALAESAAAALS--ASGLR 504

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V  DD  G   G +   A+L+G P  ++ G +   D  VE++HR TG RE+++L+E +  
Sbjct: 505 VLLDDRAGLSPGVKLTDAELIGVPWILVAGRRS-GDGVVELQHRPTGTREELTLDEALAR 563

Query: 438 AS 439
            +
Sbjct: 564 LT 565


>gi|71892130|ref|YP_277862.1| threonyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|71796236|gb|AAZ40987.1| threonyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 408

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 137/434 (31%), Gaps = 40/434 (9%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
              D    + +L L      + + G+  W   G   L  +  IIR +       E+  PT
Sbjct: 6   KKNDHRNLAKQLHLY--HTQKDAPGMVFWHQNGWILLQELKKIIRTQLKEYKYQEVKSPT 63

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           + +  LW ++G +D+Y  E +             P +      IF   IKSY++LP+   
Sbjct: 64  MINHTLWKKTGHWDNY-HEHIFTTSSESHEYCIKPMNCPGHIQIFNQGIKSYKDLPYRIA 122

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +     R+E      G+MR+REF   D + F    +      N        I++  G K+
Sbjct: 123 EFGNCHRNEPSGSLHGLMRTREFTQDDGHIFCTKTQIFDEL-NHCIKMMYDIYNTFGFKT 181

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           I ++  + P                      +    D      +T               
Sbjct: 182 ILVKLSTRPAKR-----------------IGTDSIWDTAEQHLSTVLQHNNISFQYQPND 224

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-Y 311
            A Y    +     L DSL    +     ++               +A +          
Sbjct: 225 GAFYGPKIEF---ALLDSLDRTWQCGTIQLDFSLPNLL--------NARYIDRHNSRVVP 273

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G+M     +I   + G    W        +++           +    I  +
Sbjct: 274 VMIHRAILGSMERFIGLITEEYAGFFPTWLAPTQVVLMNVT------DQQSEYVSVIEKK 327

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L         D   E+IG +     L   P  +I G+K ++ + V I+       ++ ++
Sbjct: 328 LINKKIRTKVDLRNEKIGFKIRYYTLQRIPYMLICGNKEMNQNTVAIRTYRGQTLKNCNI 387

Query: 432 EEVINYASHRFSNN 445
           +  I       ++ 
Sbjct: 388 DIFIKKLLCEINSY 401


>gi|297663737|ref|XP_002810324.1| PREDICTED: LOW QUALITY PROTEIN: threonyl-tRNA synthetase,
           mitochondrial-like [Pongo abelii]
          Length = 719

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 86/457 (18%), Positives = 146/457 (31%), Gaps = 57/457 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
             +   RD      +  L     H+ S G   +LP G +  + + A IR E  R G  E+
Sbjct: 295 REEAELRDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFSEV 352

Query: 70  SVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKAMIYGPTHEEV 113
             PTL S  LW +SG ++ Y ++M                          +   P +   
Sbjct: 353 KTPTLFSTKLWKQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPA 412

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              +F    +S+R LP          R E      G+ R R F   DA+ F  T +    
Sbjct: 413 HCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAE 472

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                      ++  LG                    F +   T  +         D   
Sbjct: 473 -IQSCLDFLRSVYAVLGFS------------------FHLALSTRPSGFLGDPCLWDQAE 513

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                   +      +     A Y    DVH   L D+L    +     ++    F    
Sbjct: 514 QVLKQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPL 566

Query: 293 KYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       +KG  G  +  V +    +G++  +  V+    +  G  WP  ++PF++ +
Sbjct: 567 RFD----LQYKGQAGALERPVLIHRAVLGSVERLLGVLA---ESCGGKWPLWLSPFQVVV 619

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           I +    +   +  ++    L   G     D D G  +  +   A L  +  Q +VG K 
Sbjct: 620 IPVGTEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRVRRAQLAHYNFQFVVGQKE 676

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            S   V I+ R      +  L E +       +   P
Sbjct: 677 QSKRTVNIRTRDNRRLGEWDLPEAVQRLVELQNTRVP 713


>gi|219849385|ref|YP_002463818.1| threonyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
 gi|219543644|gb|ACL25382.1| threonyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
          Length = 594

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 140/446 (31%), Gaps = 39/446 (8%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L  L+E+ R D      +L L          G+  + P G+     +   +RE Q R
Sbjct: 182 EAYLHRLEESRRRDHRRLGKELGLF-FFSDDIGPGLPIFSPKGEIIRHEMEKFVREVQTR 240

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEE-VMTDIFRSH 121
            G   +    +    L+ +SG YD+Y   M     +  D      P +    MT   +  
Sbjct: 241 YGYQHVWTGNVVKEQLYRKSGHYDNYRDSMFPPMVESEDLIFRLKPMNCPSHMTLYNQLG 300

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + SYR+LP  F +    +R E      G+ R R     D + F    +  +  ++     
Sbjct: 301 VISYRDLPLRFAEFATLYRYEDSGALSGLTRVRALTQDDCHIFCRPDQIQEE-FSLALQV 359

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +          +R                     E +     +  +    +     +
Sbjct: 360 IREVLGTYKFTDYKVRLSLRG---------------KEGKYVQDDEKWELATAALRAALE 404

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                    E   A Y   +D       D L    ++S   ++       G         
Sbjct: 405 ANGVEYFEAEGEAAFYGPKADFL---ARDVLGREWQLSTIQVDFIQPARLG--------C 453

Query: 301 TFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            + G D K H   +      G       ++    +     +P  +AP +  +I I     
Sbjct: 454 EYIGEDDKPHTPVVLHRAVTGTTERFMGILI---EHYAGAFPLWLAPVQAVIIPITDK-- 508

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   K+  RL   G  V  D+  +++  +   A L   P  +I+G++  S   V ++
Sbjct: 509 -QMEYARKVRQRLFAAGLRVELDENRDRMQGKIRRAQLQKIPYMLIIGAREESADAVAVR 567

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R       M +E  +  A       
Sbjct: 568 TRAGDDLGAMPVEAFLARALEEIRTR 593


>gi|301768134|ref|XP_002919483.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Ailuropoda
           melanoleuca]
          Length = 723

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 151/447 (33%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNTLIEFIRSE 363

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 364 YRKRGFQEVVSPNIYNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 422

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 423 RPRSWRELPLRIADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAIEQIEDE-IKGCLD 481

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +++  G         + P       E    A+                        
Sbjct: 482 FLRTVYNVFGFSFKLN-LSTRPEKFLGDIEVWNQAEK-----------------QLENSL 523

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    +++L   
Sbjct: 524 NEFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRFNLTFV 576

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ ++ +     
Sbjct: 577 SH--DGDDKKRPVIVHRAILGSVERMIAILT---ENFGGKWPFWLSPRQVMVVPVGP--- 628

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C +  +K+  +       V  D D G  +  +   A L  +   +++G K  +   V I
Sbjct: 629 TCDEYAQKVRQQFHDAKFTVDIDLDPGCTLNKKIRNAQLAQYNFILVIGEKEKASGTVNI 688

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   +  + ++ E I        + 
Sbjct: 689 RTRDNKVHGERTISETIERLQQLKQSR 715


>gi|88607718|ref|YP_505783.1| threonyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
 gi|88598781|gb|ABD44251.1| threonyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
          Length = 615

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 164/446 (36%), Gaps = 41/446 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +L+E  R D    +  L      I   + G   W   G      +   +R++    G
Sbjct: 208 YFKLLEEAERRDHRKIAKDLEWF--HIQNEALGQVFWHDKGWTLYRTIEEYLRKKLRENG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW +SG ++ + + M  ++D+N + +   P +      IF+S  +SY
Sbjct: 266 YTEIKTPIMLDRKLWEKSGHWEKFRENMFIVSDQNSQELAIKPMNCPCHVQIFKSKTRSY 325

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP    +  +  R+E     +G+MR R F   DA+ F    +       K +   + +
Sbjct: 326 KDLPIRMAEFGMCHRNEPSGSLYGLMRVRGFTQDDAHIFCTHDQIRDE-VRKFYKLLVEV 384

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           ++  G K+I ++    P     S E   +A+                        DD   
Sbjct: 385 YNDFGFKNIDVKLSDRPEERIGSDEMWDMAERSLMD-----------------SMDDEGV 427

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +I +   A Y    +     L D+L  N +     ++       G        A + G
Sbjct: 428 KYTINKGDGAFYGPKLEF---TLKDALGRNWQCGTIQLDFVLPSRLG--------AYYVG 476

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           +DG  H+   +    +G +     ++    +      P  +AP ++ ++ + ++     +
Sbjct: 477 SDGNKHHPVMIHRAILGTLERFIGILI---ESYAGNLPAWLAPVQLEILTVNSN---ALE 530

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +  +  +    V  +   E IG +   +     P+  +VGS   +D  V ++H  T
Sbjct: 531 YATTLANKAREHNIRVELNSGEESIGQKIRKSIFNKIPVLWVVGSAETADCTVSVRHYGT 590

Query: 424 GIREDMSLEEVINYASHRFSNNRPVL 449
                M  ++ +       S  R VL
Sbjct: 591 SNACSMEADKALKTLVTYVS-IRQVL 615


>gi|317969639|ref|ZP_07971029.1| prolyl-tRNA synthetase [Synechococcus sp. CB0205]
          Length = 633

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 108/225 (48%), Positives = 148/225 (65%), Gaps = 3/225 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L+++P +AEIASHKL+LR G I +   GIY++LPL  + L  V+A++REE
Sbjct: 26  MRVSRLMLVTLRDDPAEAEIASHKLLLRAGYIRRIGSGIYAYLPLLWRVLQKVSAVVREE 85

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA+E  +P LQ ++LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 86  LNAAGALETLLPQLQPSELWQRSGRWAGYTDGEGIMFHLEDRQGRELGLGPTHEEVITAL 145

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSF    +  K +Y  M
Sbjct: 146 AADLLRSYRQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFHANEDCLKQTYGLM 205

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
             +Y RIF R GL+++ + A+SG IGG  S EF+V A++GE  + 
Sbjct: 206 DQAYRRIFQRCGLRAVAVEADSGAIGGSASQEFMVTAESGEDLIL 250



 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 8/241 (3%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL- 271
            A   E     +   ++  I   N  +   + ++       AP +A  D+ + +  D   
Sbjct: 392 WAPRFERFADGTATALEVFICGANERYAHRLGVSWAALG-GAPDSA--DLRSAQPGDRCI 448

Query: 272 --PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P     ++RGIEVGHIF  G KYS  + ATF    G++  + MG YGIG  R+  A +
Sbjct: 449 HDPSQTLEASRGIEVGHIFQLGRKYSTALDATFTNESGQEEPLWMGCYGIGVSRLAQAAV 508

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E  HD  GI WP ++AP+++ ++          D  E +Y +L   G DV  DD  E+ G
Sbjct: 509 EQHHDANGICWPTAIAPYEVIVVIANVKATEQVDLAEGLYDQLQAAGVDVLLDDRSERAG 568

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS-HRFSNNRPV 448
            +F   +LLG P +V+VG +  ++ +VE+  R TG ++D++ +++            + +
Sbjct: 569 VKFKDTELLGIPWRVVVG-RGAAEGQVELVQRSTGAKQDLAADQLEATLLPQLLLERQGL 627

Query: 449 L 449
           L
Sbjct: 628 L 628


>gi|194223978|ref|XP_001498225.2| PREDICTED: threonyl-tRNA synthetase [Equus caballus]
          Length = 722

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 150/447 (33%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 305 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNTLIEFIRSE 362

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 363 YRKRGFQEVVTPNIYNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 421

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 422 RPRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAIEQIEDE-IKGCLD 480

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E    A+                        
Sbjct: 481 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIEVWNQAEK-----------------QLENSL 522

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    +++L   
Sbjct: 523 NEFGEKWVLNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRFNLTFV 575

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ ++ +     
Sbjct: 576 SH--DGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP--- 627

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C +  +K+  +       V  D D G  +  +   A L  +   ++VG K  +   V I
Sbjct: 628 TCDEYAQKVRQQFHDAKFMVDVDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKTSGTVNI 687

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   +  + +L E I        + 
Sbjct: 688 RTRDNKVHGERTLSETIERLQQLKQSR 714


>gi|189219987|ref|YP_001940627.1| Threonyl-tRNA synthetase [Methylacidiphilum infernorum V4]
 gi|189186845|gb|ACD84030.1| Threonyl-tRNA synthetase [Methylacidiphilum infernorum V4]
          Length = 611

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 84/465 (18%), Positives = 144/465 (30%), Gaps = 61/465 (13%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + Q   RD      +L L   +  +   G+  WLP G      +   + EE  + G   
Sbjct: 180 QLEQAKKRDHRKIGKELELFL-IDERVGAGLPLWLPKGAVIRRELQNFLTEELLQRGYQL 238

Query: 69  MSVPTLQSADLWVESGRYDSYG----------KEMLRLADRNDKA--------------M 104
           +  P + S DL+  SG Y  Y            E+    D+                   
Sbjct: 239 VYTPHIGSLDLFRTSGHYPYYRESQFPPILDPDELKAFEDKTGSCAELANRLEKGEVGGY 298

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSF 163
           +  P +  +   IF S  +SYR+LP    +    +R E      G+ R R F   DA+ F
Sbjct: 299 LLKPMNCPMHIRIFDSKPRSYRDLPVRIAEFGTVYRFEKSGELSGLTRVRGFTQDDAHIF 358

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
             T    +            +  ++GL       ++    G    E        + +   
Sbjct: 359 C-TESQVEGELMDCLDLVKVVIQKVGL------LDTKARLGLRGEE--------KEKYVG 403

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           S +                           A Y    D     + D++  + ++    ++
Sbjct: 404 SPESWKKAEEGLRRAAAKSGIDFVEEPGEAAFYGPKVDFL---VKDAIGRSWQLGTVQLD 460

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWP 341
                 F        S ++ G DG+ H   +          R +A +IE       +   
Sbjct: 461 YNLPARF--------SLSYVGEDGQLHAPVIIHRAPFGSLERFLAILIEHYEGHFPLWLA 512

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
                                   EKI   L +    V  D   + +G++  VA L   P
Sbjct: 513 PEQVRVIPV-------SDGLIAYGEKIKEILQQNRFRVSLDRKNDTLGAKIRVAQLQKVP 565

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             +IVG K    S+V ++    G   +MSL+  I+  +  +   R
Sbjct: 566 YMLIVGKKEEQMSRVSVRTSKKGNIGEMSLDTFISLITAEYKERR 610


>gi|222480176|ref|YP_002566413.1| threonyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
 gi|222453078|gb|ACM57343.1| threonyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
          Length = 649

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 136/440 (30%), Gaps = 42/440 (9%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
             +   RD      ++ L +  I      G+  + P G+  L  ++    E     G  E
Sbjct: 240 REEALERDHRKIGQEMNLFS--IPTVTGPGLPLYHPPGKTVLRELSNFANELNRENGYEE 297

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +   +LW +SG Y++Y  +M  L D ND+     P +      IF     SYR+L
Sbjct: 298 VETPHVFRTELWKKSGHYENYKDDMF-LLDVNDEEYGLKPMNCPGHATIFDQQSWSYRDL 356

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  +++    +R E R    G+ R   F + D + F    +  +     +      +   
Sbjct: 357 PQRYFENGKVYRKEQRGELSGLSRVWSFTIDDGHLFVRPDQIRQE-IESVIEMIFEVVET 415

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           L L      A                  T   +     +  +          +       
Sbjct: 416 LDLDVEVALA------------------TRPDKSVGGDEIWESAEEQLRDVLESGGYEYD 457

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           +     A Y    D   E   D+L          ++    F    ++      T+ G D 
Sbjct: 458 VEPGDGAFYGPKIDFGFE---DALGRVWDGPTVQLD----FNMPDRFD----LTYTGEDN 506

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           +DH    +     G+      V+    DG   +W           + I            
Sbjct: 507 EDHQPVMIHRALYGSYERFFMVLIEHFDGDFPLW------LAPEQVRILPVSDETLGYAH 560

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++   L   G  V  +D    +G +         P  VIVG        V ++ R    R
Sbjct: 561 RVKNELEDAGFRVEVEDRDWTVGRKIRAGHDDRLPYMVIVGEDEQEAGTVSVRDRFENQR 620

Query: 427 EDMSLEEVINYASHRFSNNR 446
            D+ L+  +++        R
Sbjct: 621 GDVDLDAFVDHLVAERDEKR 640


>gi|121612398|ref|YP_001000243.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|152016593|sp|A1VYQ2|SYP_CAMJJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|87250412|gb|EAQ73370.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 569

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 112/271 (41%), Positives = 158/271 (58%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR     + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKKNEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAA--- 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                    E+  A YA+     N K  DSL
Sbjct: 238 KRAKKTCQDERPEANYASKFHTPNIKTIDSL 268



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 347 DFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKEGDCCVKCGAKLKQS 406

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD KG I
Sbjct: 407 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEANHDEKGCI 466

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +    +L+G
Sbjct: 467 WNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMNDFELMG 526

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 527 FPYALVIG-KGLENNEIELIQREDLVKELIKTDELMEILKKKV 568


>gi|317011967|gb|ADU82575.1| threonyl-tRNA synthetase [Helicobacter pylori Lithuania75]
          Length = 612

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 151/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F                + L  
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCS-----FEQIQSEVSAILDF 379

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                         +  I       + +   T   +        +    +      +   
Sbjct: 380 --------------THKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATNALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALRRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 ERNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QDQYKMPLKEFLNMVESKMQE 609


>gi|281341862|gb|EFB17446.1| hypothetical protein PANDA_008118 [Ailuropoda melanoleuca]
          Length = 678

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 151/447 (33%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 261 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNTLIEFIRSE 318

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 319 YRKRGFQEVVSPNIYNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 377

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 378 RPRSWRELPLRIADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAIEQIEDE-IKGCLD 436

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +++  G         + P       E    A+                        
Sbjct: 437 FLRTVYNVFGFSFKLN-LSTRPEKFLGDIEVWNQAEK-----------------QLENSL 478

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    +++L   
Sbjct: 479 NEFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRFNLTFV 531

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ ++ +     
Sbjct: 532 SH--DGDDKKRPVIVHRAILGSVERMIAILT---ENFGGKWPFWLSPRQVMVVPVGP--- 583

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C +  +K+  +       V  D D G  +  +   A L  +   +++G K  +   V I
Sbjct: 584 TCDEYAQKVRQQFHDAKFTVDIDLDPGCTLNKKIRNAQLAQYNFILVIGEKEKASGTVNI 643

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   +  + ++ E I        + 
Sbjct: 644 RTRDNKVHGERTISETIERLQQLKQSR 670


>gi|308183917|ref|YP_003928050.1| threonyl-tRNA synthetase [Helicobacter pylori SJM180]
 gi|308059837|gb|ADO01733.1| threonyl-tRNA synthetase [Helicobacter pylori SJM180]
          Length = 612

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 151/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F                + L  
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCS-----FEQIQSEVSAILDF 379

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                         +  I       + +   T   +        +    +      +   
Sbjct: 380 --------------THKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATNALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 EHNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ +    + I+ R  
Sbjct: 529 FALKLKEELKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEMETEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QTQYKMPLKEFLNMVESKMQE 609


>gi|239621659|ref|ZP_04664690.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515534|gb|EEQ55401.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 607

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 107/284 (37%), Positives = 156/284 (54%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE 
Sbjct: 10  RMSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREEI 69

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +  
Sbjct: 70  NGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDM 129

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y
Sbjct: 130 YSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYYDERGAY 189

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-- 239
            RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + + +T    
Sbjct: 190 ERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEALSTPELP 249

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +   S      +   P A T D   E+     P       +  +
Sbjct: 250 EIDASTTPAASKEATPDAKTIDNMIERANADHPRTDGREWQASD 293



 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 4/191 (2%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLP 297
           ++ +   ++V           +    +  D  P+        RG+E+G +F  G KYS  
Sbjct: 399 ENEVDYYNLVYGRDFKVDGVVEAVEVRHGDMSPDGSGPLSFERGVEIGQVFQLGLKYSKA 458

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +       +GK   V MG YGIG  RV+A + E+ HD  G+ W  SV       +     
Sbjct: 459 LDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLAW-PSVIAPAAVHVVATGK 517

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           D V  +  EK+ A L   G +V +DD  +   G +F  A+L+G PL  +VG  +V+D  +
Sbjct: 518 DAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELIGVPLVAVVGRDYVNDGTI 577

Query: 417 EIKHRLTGIRE 427
           E++ R    + 
Sbjct: 578 ELRDRNGENKV 588


>gi|327183775|gb|AEA32222.1| prolyl-tRNA synthetase [Lactobacillus amylovorus GRL 1118]
          Length = 565

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 109/265 (41%), Positives = 148/265 (55%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L    AII +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEAIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDRINVPEMIMPHLLPATLWQESGRYKKYGPEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     +N    +
Sbjct: 121 NLKSYKQMPMALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFNDQENA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  +++             D
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNENGTYAANLEMAKSID 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                    ++ T       D   +
Sbjct: 241 TFKQDPEDPKELTKIATPDCDTIEK 265



 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A   V NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFADLRVANEGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAQ 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++A +E     +G+ WP  +APF+I ++ +K +     +  EK+  
Sbjct: 435 PVIMGSYGIGVTRMLSAAVEQHLTERGVAWPKEIAPFEIHIVQMKMNKDDQTELAEKLEK 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           + S+   DV +DD  E+ G +FA ADL+G P+++ +G K  +D  VE+K        +MS
Sbjct: 495 KFSEK-YDVLYDDRKERAGVKFADADLVGAPIRITIGKK-AADGIVEVKRPTDAKATEMS 552

Query: 431 LEEVINYASHRF 442
           ++E+  + +   
Sbjct: 553 IDELDKFVNQEL 564


>gi|45190711|ref|NP_984965.1| AER105Wp [Ashbya gossypii ATCC 10895]
 gi|44983690|gb|AAS52789.1| AER105Wp [Ashbya gossypii ATCC 10895]
          Length = 457

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 159/447 (35%), Gaps = 44/447 (9%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR-EEQNRTGAIEMSVPTLQS 76
           A   S +  L   +    S G   +LP G K  + +   ++ ++QN+ G  E+  P +  
Sbjct: 37  AREVSSRQDLY--LTDPISPGSTFFLPNGTKVFNKLIQFMKLQQQNKFGFQEVITPLIYR 94

Query: 77  ADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             LW +SG +++Y  +M R+   D   +     P +      +F+   +SY  LP  F  
Sbjct: 95  KSLWEQSGHWENYKDDMFRVEGNDCAKEEYGLKPMNCPGHCVMFKRFDRSYTELPLRFSD 154

Query: 135 IQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
                R+E      G+ R R+F   D + F    +        + +  L     L L   
Sbjct: 155 FSPLHRNEASGALSGLTRVRKFHQDDGHIFCTPEQVEGEIEKCLQLVDLCYGSVLPLGET 214

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
             RAE   +      E          +     D  +       +  D+     SI E   
Sbjct: 215 SDRAELYTMCLSTRPE----------KYVGELDVWNHAESVLKSILDNSGKQWSINEGDG 264

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV- 312
           A Y    D+   K+ D   +  +V+   ++    F    ++ +     +K AD       
Sbjct: 265 AFYGPKVDI---KVKDHTGKYHQVATIQLD----FQLPERFDMR----YKDADNTYKRPI 313

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA-- 370
            +     G++    A++    D     WP  + P +  ++ + A +     A + +    
Sbjct: 314 MIHRAVFGSVERFMALLL---DSNKGNWPFWLNPHQCMVLPVSASNGEMVQAAKALVDKL 370

Query: 371 -----------RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                       L+    +   D   E +G +   A    +   V++G++ ++ +KV ++
Sbjct: 371 CGRDTSSTKPVELNSFHFNAEIDLRDESVGYRLRDAISRKYSYIVLIGARELAQNKVAVR 430

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R +   + MS EE+ +         +
Sbjct: 431 SRDSSKIQMMSTEELYDMFCDLERKYK 457


>gi|170016989|ref|YP_001727908.1| prolyl-tRNA synthetase [Leuconostoc citreum KM20]
 gi|226701307|sp|B1MY62|SYP_LEUCK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169803846|gb|ACA82464.1| Prolyl-tRNA synthetase [Leuconostoc citreum KM20]
          Length = 571

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 108/271 (39%), Positives = 152/271 (56%), Gaps = 5/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH+L+L+ G I   S G +S+LP+ ++ L+ +  IIREE
Sbjct: 1   MKQSKLLMPTLREVPADAEVKSHQLLLKAGFIRPVSAGTFSYLPMAKRVLNKIEQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A EM VP +  A+LW +SGRY +YG  + +  +R D+  I GPTHEE  T +   
Sbjct: 61  MDRIDANEMLVPEILPAELWQKSGRYTTYGPNLYKFKNRQDRDFILGPTHEETFTQLMAD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG++R+REF+MKDAYSF     G   ++  M  +
Sbjct: 121 DIKSYKKLPLVVYQIQPKFRDENRPRFGLLRTREFIMKDAYSFSADQAGLDTAFRNMESA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +F R+GL    +  ++G +GG  S EF   A  GE  +  S    D+    E     
Sbjct: 181 YTNVFDRIGLNYRAIVGDAGAMGGSDSKEFSAPAAAGEDIIAYSDTT-DYAANLE----M 235

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                      ++A      D  NEK  + L
Sbjct: 236 AKDFYERQKPTFSAEPLEKIDTPNEKTIEEL 266



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 1/158 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                V  +GIE+GHIF  GT+YS  M A     +G+   + MGSYGIG  R+++A++E 
Sbjct: 398 GHGHLVFTKGIEIGHIFKLGTRYSKAMGAQVLDENGRQVDMIMGSYGIGVSRLLSAIVEQ 457

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++WP SVAPF + ++ +   D        ++   L+K G +V  DD  E+ G +
Sbjct: 458 KADDDGLVWPASVAPFDVHIVPVNTKDDEQAGVASQLEELLTKQGLEVLIDDRKERAGVK 517

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           FA ADL+G P+++ VG K  S+  VE+K R +    +M
Sbjct: 518 FADADLIGLPIRITVGKK-ASEDVVEVKVRASNTNIEM 554


>gi|16552114|dbj|BAB71241.1| unnamed protein product [Homo sapiens]
          Length = 707

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 150/447 (33%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 290 KMMRDWEKFQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLTDFIREE 347

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y + M       D      P +      +F  
Sbjct: 348 YHKRDFTEVLSPNMYNSKLWEASGHWQHYSENMFTFEIEKDT-FALKPMNCPGHCLMFAH 406

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 407 RPRSWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLQ 465

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  +          
Sbjct: 466 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEIEMWNEAEKQLQNSL 507

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 508 MDFGEPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 560

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 561 SK--DGDDKKRPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP--- 612

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C     ++ +   + G     D D    +  +   A L  +   ++VG K   D+ V +
Sbjct: 613 TCEKYALQVSSEFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNV 672

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   I  ++ +   I+   +     
Sbjct: 673 RTRDNKIHGEILVTSAIDKLKNLRKTR 699


>gi|121610033|ref|YP_997840.1| threonyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
 gi|166225514|sp|A1WMG5|SYT_VEREI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|121554673|gb|ABM58822.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Verminephrobacter eiseniae EF01-2]
          Length = 639

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 150/447 (33%), Gaps = 44/447 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L    I +HS G   W P G      V   +R      
Sbjct: 230 QYLTMLEEAEKRDHRKLGRELDLF--HIDEHSPGTVFWHPKGWTLWQEVEQYMRRVYRDN 287

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    LW ++G +D Y + M  + +   +     P +      IF+  IKS
Sbjct: 288 GYQEVKGPQILDQGLWEKTGHWDKYRENMF-VTESEKRDYALKPMNCPGHIIIFKQGIKS 346

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  F +     R+E      G+MR R F   D + F    +              +
Sbjct: 347 YRDLPLRFGEFGQCHRNEPSGGLHGIMRVRAFTQDDGHIFCTAQQIQSE-ILAFTALVQK 405

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G   I  +  + P     + E                   D    +         
Sbjct: 406 VYRDFGFTDIIYKLATRPEKHIGTEE-----------------SWDQAEHALAQGLRASG 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                +    A Y    +     L D+L    +     ++              + A F 
Sbjct: 449 CEFEYLPGEGAFYGPKVEY---TLKDALGRQWQCGTIQVDPNMP--------ERLDAEFV 497

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G DG  H    +    +G++     ++    +      P  +AP +++L+NI    +   
Sbjct: 498 GEDGARHRPIMLHRAIVGSLERFIGILL---EQHAGALPAWLAPVQLALLNIT---EAQS 551

Query: 363 DACEKIYARLSKV----GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           D C +I A++ K     G  +  D   E+I  +     +   P  ++ G K  +   V +
Sbjct: 552 DYCREIAAKMQKALSHLGLRLLLDLRNEKITYKIREHSMQKLPYILVAGDKERAAGAVAV 611

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G    MS++  I   +   S  
Sbjct: 612 RARGHGDLGVMSVDAFIERIADEISTK 638


>gi|330718639|ref|ZP_08313239.1| prolyl-tRNA synthetase [Leuconostoc fallax KCTC 3537]
          Length = 572

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 108/235 (45%), Positives = 147/235 (62%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE+ SH L+L+ G I   + G++S+LPL Q+ L+ + AI+REE
Sbjct: 1   MKQSKLLMPTLREVPADAEVRSHALLLKAGYIRPVAAGMFSYLPLAQRVLNKIEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A EMSVP +  A+LW ESGRY +YG  + +  +R ++  I GPTHEE  T + R 
Sbjct: 61  MAKIDANEMSVPEILPAELWQESGRYATYGPALYKFKNRQNRDFILGPTHEETFTQLMRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDE RPRFG++R+REF+MKDAYSF    EG   +Y  M  +
Sbjct: 121 DIKSYKKLPLLVYQIQAKFRDENRPRFGLLRTREFIMKDAYSFSADQEGLDDAYRAMEQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R+GL    +  ++G +GG  S EF   AD GE  +  S    D+    E
Sbjct: 181 YTNIFDRVGLTYRAIVGDAGAMGGSDSKEFSAPADAGEDIIAYSD-ATDYAANLE 234



 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 3/207 (1%)

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--PENKRVSARGIEVGHIFYFGTKYS 295
             D  +S  +     T P     D    +  D     + K V  +GIE+GHIF  GT+YS
Sbjct: 363 HDDQHLSHINWQRDVTLPEENVGDFRVAREGDLSVDGKGKLVFTKGIEIGHIFKLGTRYS 422

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
             + A     +G+   + MGSYGIG  R+++A+ E   D  G++WP SVAPF + ++ I 
Sbjct: 423 EALGAQVLDKNGRQTDMIMGSYGIGISRLLSAISEQKADEDGLVWPTSVAPFDVHIVPIN 482

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             D        ++ +     G +V  DD  E+ G +FA ADL+G P+++ VG K   +  
Sbjct: 483 LKDTEQARVTRQLESEFLAQGLEVLVDDRKERAGVKFADADLIGLPIRITVGKK-AEEDI 541

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           VE+K R +    +M + EV++  +   
Sbjct: 542 VEVKVRASNTNIEMRVSEVVDSVAVLL 568


>gi|295426319|ref|ZP_06818978.1| proline--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
 gi|295063992|gb|EFG54941.1| proline--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
          Length = 566

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 111/282 (39%), Positives = 151/282 (53%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLMLR G I Q + G+YS+LPLG + L     I+ +E
Sbjct: 1   MRQSKFFMPTLKEAPADAVAESHKLMLRGGYIRQVTAGVYSYLPLGFRVLRKAENIMEDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    EM +P    A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MEKINVPEMMMPHFLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M DAYSF  T E     ++    +
Sbjct: 121 NLKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDAYSFAATREQLDEQFDDEKRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +  ++ R G+   P+ A+SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 FENVYRRCGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNESGTYAANLEMAKSID 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                    ++ T       D   EKL   L   K    +GI
Sbjct: 241 TFKQDPEDAKELTKVSTPGCDT-IEKLAKFLDVPKTRIVKGI 281



 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 66/193 (34%), Positives = 97/193 (50%), Gaps = 3/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFADIRTANEGEPDPVDHEPLKFTTSIEVGHIFKLGTYYTKTMGADFLDNNGKAK 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKIY 369
            V MGSYGIG  R+++AV+E      G I WP  +APF I LI +K ++       EK+ 
Sbjct: 435 PVIMGSYGIGVTRMLSAVVEQHLTNHGGIAWPKEIAPFSIHLIQMKMNNDEQTQLAEKLE 494

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             LS    DV +DD  E+ G +F  ADL+G P+++ +G K  +D  VE+K        ++
Sbjct: 495 KELSAK-YDVLYDDRKERPGVKFNDADLVGAPVRITIGRK-AADGIVEVKRPNDDKATEI 552

Query: 430 SLEEVINYASHRF 442
           S++++ +Y +   
Sbjct: 553 SVDQLNDYLTKEL 565


>gi|293192627|ref|ZP_06609581.1| threonine--tRNA ligase [Actinomyces odontolyticus F0309]
 gi|292820134|gb|EFF79131.1| threonine--tRNA ligase [Actinomyces odontolyticus F0309]
          Length = 677

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/450 (15%), Positives = 144/450 (32%), Gaps = 42/450 (9%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L +    +   G+  + P G      + + + +     G   
Sbjct: 245 RIKEAERRDHRRLGAELDLYS-FPEEIGPGLVVFHPKGGILRHEIESYVTDRHKAAGFDF 303

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEVMTD 116
           +  P +    L+  SG    Y   M                 +  +       +  +   
Sbjct: 304 VHTPEISKGGLFHTSGHLPYYADTMFPPMLVDEERDEDGNVTKAGQEYYLKAMNCPMHNL 363

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IFRS  +SYR LP  FY++   +R E      G+ R R F   D++++    + S+    
Sbjct: 364 IFRSRGRSYRELPLRFYELGHDYRYEKSGVVHGLTRMRGFTQDDSHTYCTPEQASEE-IR 422

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                +L I    GLK   +   +    G    +FI   +                  + 
Sbjct: 423 TQIAFFLSILSAFGLKDFYLELSTRDEDGKKKDKFIGSDED-----------WAAATKAL 471

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                             A Y       + ++ D++    ++S    +    F    ++ 
Sbjct: 472 EDACAATGLDLVPDPGGAAFYGPKV---SVQVKDAIGRTWQMSTIQYD----FNQPDRFD 524

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
           L  +A       +   V + S  +G++     V+    +     +P  ++P ++ LI + 
Sbjct: 525 LEYTAA---DGSRQRPVMIHSAKLGSVERFIGVLT---EHYAGAFPAWLSPVQVRLIPVA 578

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +      + + A+L + G  V  D   ++ G +   A     P  +I G + V    
Sbjct: 579 ---EAFDGYVKDVAAKLRERGVRVETDLSDDRFGKKIRNASKDKIPFTLIAGGEDVEAGA 635

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  + R       ++++  +          
Sbjct: 636 VSFRLRDGSQHNGVAVDRAVELIVSHIEQR 665


>gi|224090286|ref|XP_002193839.1| PREDICTED: threonyl-tRNA synthetase [Taeniopygia guttata]
          Length = 711

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 154/447 (34%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 294 KMLKEWEKFQEEAKSRDHRKIGRDQELF--FFHELSPGSCFFLPKGAYIYNTLIEFIRSE 351

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y   M       +      P +      +F  
Sbjct: 352 YRKRGFQEVVTPNVFNSKLWMTSGHWQHYSDNMFSFEVEKEI-FALKPMNCPGHCLMFDH 410

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +  +    K  +
Sbjct: 411 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEEE--IKSCL 468

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +LR  + +   S  +   + P       E    A+                        
Sbjct: 469 GFLRTVYDVFGFSFKLNLSTRPEKYLGDIEVWNQAEK-----------------QLENSL 511

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +       +     A Y    D+   ++ D++    + +   ++    F    +++L   
Sbjct: 512 NAFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPVRFNLTFV 564

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     + K   V +    +G++  + A++    +  G  WP  ++P ++ ++ +     
Sbjct: 565 SH--DGNDKTRPVIIHRAILGSVERMIAILT---ENYGGKWPLWLSPQQVMVVPVGP--- 616

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C +  +K+       G     D D G  +  +   A +  +   ++VG K  +   V I
Sbjct: 617 ACDEYAQKVRQHFHDAGFMADVDVDPGCTLNKKIRNAQIAQYNFILVVGEKEKASGTVNI 676

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   +  + ++ + +        + 
Sbjct: 677 RTRDNKVHGERTIADTVERLLQLKCSR 703


>gi|317503053|ref|ZP_07961132.1| threonine--tRNA ligase [Prevotella salivae DSM 15606]
 gi|315665826|gb|EFV05414.1| threonine--tRNA ligase [Prevotella salivae DSM 15606]
          Length = 649

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 73/449 (16%), Positives = 146/449 (32%), Gaps = 36/449 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L      +  KG+  WLP G +    +  ++R      
Sbjct: 232 EYLVMLEEAKKRDHRKIGKEMELFM-FSDRVGKGLPIWLPKGTQLRLRLQKLLRSLLRPY 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P +    L+V SG Y  YGK+  +       D+  +  P +     +++    
Sbjct: 291 HYQEVITPGIGGKSLYVTSGHYAHYGKDAFQPIHTPEEDEEYMLKPMNCPHHCEVYARKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    FR E      G+ R R F   DA+ F    +     +       
Sbjct: 351 RSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIFVRPDQVKSE-FETNIDII 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L++F      +   +                     + +   S +  +    +      +
Sbjct: 410 LKVFKTFHFDNYEAQISLRD-------------PKDKEKYIGSDEIWEESENAIREACKE 456

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
              +        A Y    D     + D++    ++    ++      F           
Sbjct: 457 KGLVAHEEIGEAAFYGPKLDFM---VKDAIGRKWQLGTIQVDYNLPARF--------KLE 505

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   D        +     G++    AV+     G   +W           + I    + 
Sbjct: 506 YTAEDNTKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW------LTPDQVAILPISEK 559

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +++      VG     DD  E+IG +    +L   P  VIVG K  ++  V ++ 
Sbjct: 560 YNDYAKQVGQYFDTVGVRSVIDDRNEKIGRKIRDNELKRIPYMVIVGEKEAAEGLVSMRK 619

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  G +  M +EE     +   ++    L
Sbjct: 620 QGGGEQATMKMEEFAKRITDEVADQLKTL 648


>gi|296203929|ref|XP_002749128.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like
           [Callithrix jacchus]
          Length = 726

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 151/447 (33%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 309 KMMRNWEKFQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLVDFIREE 366

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y + M       D      P +      +F  
Sbjct: 367 YHKRDFTEVLSPNMFNSKLWEASGHWQHYSENMFTFEIEKDT-FALKPMNCPGHCLMFAH 425

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 426 RPRSWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLQ 484

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  +          
Sbjct: 485 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEIEMWNEAEKQLQNSL 526

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 527 MEFGEPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 579

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 580 SK--DGDDKKRPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP--- 631

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C     ++ +   + G     D D    +  +   A L  +   ++VG K   ++ V +
Sbjct: 632 TCEKYALQVSSEFFEEGFMADIDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKINNAVNV 691

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   I  ++ +   I+   +   + 
Sbjct: 692 RTRDNRIHGEILVTSAIDKLKNLKKSR 718


>gi|321475248|gb|EFX86211.1| hypothetical protein DAPPUDRAFT_127463 [Daphnia pulex]
          Length = 688

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 154/439 (35%), Gaps = 43/439 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +   +R E  + G  E+ 
Sbjct: 282 EEAAKRDHRKLGREYELF--FFHELSPGACFFTPHGAHIYNTLVEFLRNEYKQRGFQEVI 339

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + ++ LW+ SG +  Y + M       +      P +      +F   ++S+R LP 
Sbjct: 340 TPNVYNSKLWLTSGHWQHYSENMFSFEVEKET-YAMKPMNCPGHCLLFDHRVRSWRELPL 398

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +          +++LR  +++ 
Sbjct: 399 RLADFGVLHRNELSGALSGLTRVRRFQQDDAHIFCTMGQIKSE--INGALAFLRDVYKIF 456

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +  +R  + P       E    A+                        ++      + 
Sbjct: 457 GFTFQLRLSTRPEKFLGEIETWNHAEK-----------------ELTESLNEFGETWLLN 499

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    ++    + +F    G+ 
Sbjct: 500 PGDGAFYGPKIDI---TIMDALRRPHQCATIQLD----FQLPIRF----NLSFINEAGEK 548

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +    +G++  + A++  S+ GK   W        + +  +           +++
Sbjct: 549 EKPVIIHRAILGSVERMIAILTESYAGKWPFWLSPRQCVVVPVGPVFDG------YAQQV 602

Query: 369 YARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             +++  G  +  D D G+ +  +     L      ++VG K  ++  V I+ R   +  
Sbjct: 603 REQIAAAGFRITADIDAGDTMNKKIRNGQLSQHNFILVVGEKEQTNGTVNIRTRDNKVHG 662

Query: 428 DMSLEEVINYASHRFSNNR 446
           + ++ +VI   +   S ++
Sbjct: 663 EHTIAKVIERFTQ-LSKDK 680


>gi|308182296|ref|YP_003926423.1| threonyl-tRNA synthetase [Helicobacter pylori PeCan4]
 gi|308064481|gb|ADO06373.1| threonyl-tRNA synthetase [Helicobacter pylori PeCan4]
          Length = 612

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 150/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F                + L  
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCS-----FEQIQSEVSAILDF 379

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                         +  I       + +   T   +        +    +      +   
Sbjct: 380 --------------THKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATNALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 EYNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +   A+    P+ +++G++ +    + I+ R  
Sbjct: 529 FALKLKEVLKKRNIFVEVLDKNDSLNKKVRSAEKQKIPMILVLGNEEMETENLSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|254819890|ref|ZP_05224891.1| threonyl-tRNA synthetase [Mycobacterium intracellulare ATCC 13950]
          Length = 691

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 69/449 (15%), Positives = 139/449 (30%), Gaps = 47/449 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 261 IEEAQRRDHRKLGTELDLFS-FPDEIGSGLAVFHPKGGIVRRELEEYSRRKHIAAGYEFV 319

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDI 117
           + P +  ADL+  SG  D Y + M                 +  +     P +  + T I
Sbjct: 320 NTPHITKADLFHTSGHLDWYAEGMYPPMHLDAEYDDDGTVRKPGQDYYLKPMNCPMHTLI 379

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FRS  +SYR LP   ++    +R E      G+ R+R F M DA+ F    +        
Sbjct: 380 FRSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTMDDAHIFCAREQLHAEL-AS 438

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +    GL+   +   +                    +   S    +    +  
Sbjct: 439 LLRFILELLGDYGLEDFYLELST----------------KDPEKFVGSDAMWEESTKALA 482

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               +            A Y       + +  D+L  + ++S   ++    F F  ++ L
Sbjct: 483 DVAAESGLQLVPDPGGAAFYGPKI---SVQARDALGRSWQMSTIQVD----FNFPERFEL 535

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             +A       +   V +     G++     ++   + G    W   V    I +     
Sbjct: 536 EYTAA---DGSRQRPVMIHRALFGSIERFFGILTEHYAGAFPAWLAPVQVVGIPVA---- 588

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D    + A+L   G  V  D   +++  +         P  ++ G + V+   V
Sbjct: 589 --DDHVDYLNDVAAQLRSHGVRVEVDASDDRMAKKIVNHTNQRVPFMLLAGDRDVAAGAV 646

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +         +  +  ++      ++ 
Sbjct: 647 SFRFGDRTQINGVPRDGAVDAIVKWIADR 675


>gi|317013544|gb|ADU80980.1| threonyl-tRNA synthetase [Helicobacter pylori Gambia94/24]
          Length = 612

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 152/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ E     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPIWLPKGARLRKRIEDLLSEALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F    +          + +   
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSE--VSAILDFTHK 382

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             +    S  M   + P       E                   +    +      +   
Sbjct: 383 IMQAFDFSYEMELSTRPAKSIGDDE-----------------VWEKATNALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 EHNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ +    + I+ R  
Sbjct: 529 FALKLKEELKKRDIFVEALDKNDSLNKKVRLAEKQKIPMILVLGNEEMETEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|315038578|ref|YP_004032146.1| prolyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
 gi|312276711|gb|ADQ59351.1| prolyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
          Length = 565

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 109/265 (41%), Positives = 148/265 (55%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L    AII +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEAIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDRINVPEMIMPHLLPATLWQESGRYKKYGPEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     +N    +
Sbjct: 121 NLKSYKQMPMALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFNDQENA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  +++             D
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNENGTYAANLEMAKSID 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                    ++ T       D   +
Sbjct: 241 TFKQDPEDPKELTKVATPDCDTIEK 265



 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A   V NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFADLRVANEGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAQ 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++A +E     +G+ WP  +APF+I ++ +K +     +  EK+  
Sbjct: 435 PVIMGSYGIGVTRMLSAAVEQHLTERGVAWPKEIAPFEIHIVQMKMNKDDQTELAEKLEK 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           + S+   DV +DD  E+ G +FA ADL+G P+++ +G K  +D  VE+K        +MS
Sbjct: 495 KFSEK-YDVLYDDRKERAGVKFADADLVGAPIRITIGKK-AADGIVEVKRPTDAKATEMS 552

Query: 431 LEEVINYASHRF 442
           ++E+  + +   
Sbjct: 553 IDELDKFVNQEL 564


>gi|108562547|ref|YP_626863.1| threonyl-tRNA synthetase [Helicobacter pylori HPAG1]
 gi|123247050|sp|Q1CV33|SYT_HELPH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|107836320|gb|ABF84189.1| threonyl-tRNA synthetase [Helicobacter pylori HPAG1]
          Length = 612

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 152/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSQALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F    +          + +   
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSE--VSAILDFTHK 382

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             +    S  M   + P       E                   +    +      +   
Sbjct: 383 IMQAFDFSYEMELSTRPAKSIGDDE-----------------VWEKATNALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALRRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 ERNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEELKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|156042356|ref|XP_001587735.1| hypothetical protein SS1G_10975 [Sclerotinia sclerotiorum 1980]
 gi|154695362|gb|EDN95100.1| hypothetical protein SS1G_10975 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 791

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 81/470 (17%), Positives = 151/470 (32%), Gaps = 56/470 (11%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD         L     H+ S G   WLP G +  + + + +REE  + G  E+
Sbjct: 320 LEEAAKRDHRKLGKDQELF--FFHELSPGSAMWLPHGARIYNTIQSFLREEYWKRGYNEV 377

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + +++LW  SG +  Y  +M       D      P +      +F    +S+R LP
Sbjct: 378 ITPNMYNSELWKTSGHWAYYKDDMFTFPVEKDV-FALKPMNCPGHCLMFGHRERSHRELP 436

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           +      +  R+E      G+ R R F   DA+ F    +        +F     I+  L
Sbjct: 437 WRVADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCREDQIKDE-ITGLFDFLRAIYGLL 495

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G     ++  + P       E   +A+             D  +P E             
Sbjct: 496 GFTF-KLKLSTRPEKFLGKIETWDMAEDKLRSALDEFASSDGGVPWEL------------ 542

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG----------------- 291
            E   A Y    D+    + D L    + +   ++      FG                 
Sbjct: 543 NEGDGAFYGPKIDI---TICDCLKREWQCATIQLDFQLPQNFGLEYNTGDVPTKKEEAAV 599

Query: 292 -------TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS----HDGKGIIW 340
                   K + P                  +  +   R +A  IE       +     W
Sbjct: 600 KEPVVKPKKDTEPEDPNVPKERVYKPLTPGCARPVMIHRAMAGSIERFTAILIEHFAGKW 659

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  ++P +I +I +        +  +++ +   K    +  D  G  +  +     L  +
Sbjct: 660 PFWLSPRQILVIPVGVG---YFEYAKEVQSIFHKQQMFIDVDLSGNTLQKKIRTGQLAQY 716

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
               +VG   ++  +V +++R     +D    +SL+E I   +      R
Sbjct: 717 NFIFVVGDTEMNGREVNVRNRDDTSSQDRGKPVSLQEAIEKLTALRDERR 766


>gi|311068179|ref|YP_003973102.1| prolyl-tRNA synthetase [Bacillus atrophaeus 1942]
 gi|310868696|gb|ADP32171.1| prolyl-tRNA synthetase [Bacillus atrophaeus 1942]
          Length = 564

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 107/225 (47%), Positives = 150/225 (66%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S   +P L+E P DA+  SH+L+LR G I Q++ G+YS++PL  K + N+  I+REE
Sbjct: 1   MRQSLTLIPTLREVPADADAKSHQLLLRAGFIRQNTSGVYSYMPLAYKVIKNIQTIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM +P LQ A+ W ESGR+ +YG E++RL DR+ +    G THEEV+T + R 
Sbjct: 61  LEKINAVEMLMPALQQAETWQESGRWYTYGPELMRLKDRHGREFALGATHEEVVTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP T YQIQ KFRDE RPRFG++R REF+MKDAYSF  + E    +Y  M+ +
Sbjct: 121 EVKSYKRLPLTLYQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHASEESLDETYENMYGA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           Y  IF R  L   P+ A+SG +GG  +HEF+ L++ GE  +  S 
Sbjct: 181 YTNIFARCELNVRPVIADSGAMGGKDTHEFMALSEIGEDTIAYSD 225



 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 120/234 (51%), Gaps = 3/234 (1%)

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F+   +  +     +   +   + +     +      ++     A     +D+   +  D
Sbjct: 332 FVGPVEVSKEVEVYADLAVKAMVNAVAGANEQDYHYKNVNVDRDAAIKEYADLRFIQEGD 391

Query: 270 SLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             P+ K       GIEVG +F  GT+YS  M+AT+   +G+   + MG YGIG  R ++A
Sbjct: 392 PSPDGKGTIRFAEGIEVGQVFKLGTRYSEAMNATYLDENGRSQPMLMGCYGIGISRTLSA 451

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           + E  HD KG+IWP SVAP+ + ++ +   +   ++  EK+Y      G DV +DD  E+
Sbjct: 452 IAEQHHDEKGLIWPKSVAPYDLHILALNMKNDAQKELAEKLYETFKTEGYDVLFDDRAER 511

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            G +FA +DL+G P+++ VG +   +  VE+K R TG   ++S+EE+ ++ + +
Sbjct: 512 AGVKFADSDLIGLPIRITVGKR-ADEGIVEVKIRKTGESSEVSIEELSDFINKQ 564


>gi|325997000|gb|ADZ49208.1| Threonyl-tRNA synthetase [Helicobacter pylori 2017]
          Length = 573

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 152/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 168 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 226

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 227 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 285

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F    +          + +   
Sbjct: 286 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSE--VSAILDFTHK 343

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             +    S  M   + P       E                   +    +      +   
Sbjct: 344 IMKAFDFSYEMELSTRPAKSIGDDE-----------------VWEKATNALKEALKEHRI 386

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 387 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 435

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 436 ERNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 489

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 490 FALKLKEELKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREK 549

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 550 QAQYKMPLKEFLNMVESKMQE 570


>gi|219681500|ref|YP_002467885.1| threonyl-tRNA synthetase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471181|ref|ZP_05635180.1| threonyl-tRNA synthetase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|254783512|sp|B8D8S6|SYT_BUCA5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219624343|gb|ACL30498.1| threonyl-tRNA synthetase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 642

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 141/441 (31%), Gaps = 42/441 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +L  L+   RD       L L    + + S G+  W   G    + +   +R +      
Sbjct: 235 YLNELE--KRDHRKIGKFLQLY--HMQEESPGMIFWHNKGWIIFNELQNFVRVKLKEYKY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P L    +W +SG +D+Y   +        +     P +      IF S +KSYR
Sbjct: 291 EEVKTPLLIDKLIWKQSGHWDNYKNAIFT-TLSEHREYCIKPMNCPGHVQIFNSRLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F    +      N        ++
Sbjct: 350 DLPIRMAEFGSCHRNEPSGSLHGLMRVRNFTQDDAHIFCTREQVRSE-INDCIKMIYDLY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                K I ++  + P                      +    +      +    +    
Sbjct: 409 STFHFKKILVKLSTRPEKR-----------------IGTDSLWNESEKDLSDMLIENHLS 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                   A Y    +     L DSL  N +     ++    FY   + S      +   
Sbjct: 452 FEYQSGEGAFYGPKIEFI---LQDSLDRNWQCGTIQLD----FYLPLRLSSF----YINE 500

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +    +G++     ++     G    W   V    IS+ +I +        
Sbjct: 501 KNEKKVPVIIHRAILGSIERFIGILIEECSGNLPTWLSPVQVVIISITDISSG------Y 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++++ + S V   +  D   E+IG +     L   P  +I G K  S  K+ +++R   
Sbjct: 555 VKELFKKFSDVNIRIECDLRNEKIGFKIREHTLRRIPYILICGEKESSSKKISVRNRQGH 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
               + ++  I          
Sbjct: 615 NFGMIDVDFFIKKLQKEIITR 635


>gi|332251676|ref|XP_003274972.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic isoform 2
           [Nomascus leucogenys]
          Length = 756

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 148/449 (32%), Gaps = 44/449 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +  + +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 339 KMLKEWEKLQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 396

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y   M       +      P +      +F  
Sbjct: 397 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSDNMFSFEVEKEL-FALKPMNCPGHCLMFDH 455

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 456 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 514

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 515 FLRTVYSIFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 556

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 557 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 605

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 606 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 661

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K      V
Sbjct: 662 --TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTV 719

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I+ R   +  + ++ E I        + 
Sbjct: 720 NIRTRDNKVHGERTISETIERLQQLKQSR 748


>gi|306822719|ref|ZP_07456097.1| threonine--tRNA ligase [Bifidobacterium dentium ATCC 27679]
 gi|304554264|gb|EFM42173.1| threonine--tRNA ligase [Bifidobacterium dentium ATCC 27679]
          Length = 708

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 65/459 (14%), Positives = 135/459 (29%), Gaps = 50/459 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 273 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 331

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 332 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPAMRLDEEKDENGNIIKQGFDYYLKPMNC 391

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 392 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 451

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 452 DEL-KNLLTFVLGLLKDFGLDDFYLELST----------------KDPHKYVGSDEIWEE 494

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +      +            A Y       + +  D++    +VS   ++    F  
Sbjct: 495 ATNTLAEVAKESGLELVDDPCGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 547

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
             ++       +  ADG       +     G++    AV+   + G    W   V    +
Sbjct: 548 PERF----KLEYIAADGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAPVQVLGV 603

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +              ++  A L +       D   ++ G +   A     P  +IVG +
Sbjct: 604 PVA------DEFAPHLQRFIASLEEETVRCEIDMSDDRFGKKIRNASKSKVPFILIVGEE 657

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            ++++ V  + R       + ++E  N           V
Sbjct: 658 DMNNNAVSFRFRDGSQLNGVPVDEAKNQIMTVLRKRVQV 696


>gi|296394267|ref|YP_003659151.1| prolyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
 gi|296181414|gb|ADG98320.1| prolyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
          Length = 599

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 96/223 (43%), Positives = 137/223 (61%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ F+  L+E+P DAE+A+HKL++R G + + S G+++WLPLG K L  V A++REE 
Sbjct: 4   RLSELFVRTLREDPADAEVANHKLLVRGGYVRRVSPGVFTWLPLGLKVLRQVEAVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+ +P L     +  S R+  YG  + RL DR     +  PTHEE+   I +  
Sbjct: 64  DAIGAQEILLPALAPRQPYETSNRWTEYGDNLFRLKDRKGGDYLLAPTHEELFALIVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REF+MKDAYSFD+   G+K +Y+    +Y
Sbjct: 124 YTSYKDLPVILYQIQTKYRDEERPRAGILRGREFVMKDAYSFDVDEAGNKAAYHAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            RIF RLG+  + + A SG +GG  S EF+  +  GE      
Sbjct: 184 QRIFDRLGVSYVIVAATSGAMGGSASEEFLAESAIGEDTYVRC 226



 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 87/172 (50%), Gaps = 3/172 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T D    +  D  P+ +   V+ARGIE+GH+F  GTKY+   S    G +GK   + MG
Sbjct: 394 GTIDAAEVREGDPSPDGRGPLVAARGIEIGHVFALGTKYTDAFSVDVLGENGKPARLIMG 453

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+V  + E   D KG+ WP  VAPF++ +++          A           
Sbjct: 454 SYGIGVSRLVGVIAEQWLDEKGLRWPPQVAPFQVHVLSTGKGGAEAEAAERYAAEL-ESH 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           G  V  DD     G +FA A+LLG P+ V+VG  +  + KVE+K R +G   
Sbjct: 513 GLRVLLDDRKASPGVKFADAELLGAPVVVVVGRDWAGEGKVELKERFSGASG 564


>gi|261837575|gb|ACX97341.1| threonyl-tRNA synthetase [Helicobacter pylori 51]
          Length = 612

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 151/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L  G   +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLF-GFDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F                + L  
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCS-----FEQIQSEVSAILDF 379

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                         +  I       + +   T   +        +    +      +   
Sbjct: 380 --------------THKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATSALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 ERNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEALKKCDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVESEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|206900126|ref|YP_002250745.1| threonyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
 gi|206739229|gb|ACI18287.1| threonyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
          Length = 638

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 135/438 (30%), Gaps = 38/438 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
             +   RD      +L +      +   G+  + P G      +    R+E  + G + +
Sbjct: 231 REEAQRRDHRKLGRELEIFDTF-EEAGPGLIFYPPKGAMLRLIIEEFERKEHLKRGYLPV 289

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P L  A+LW  SG +D+Y + M  L    DK     P +      I+ S ++SYR+LP
Sbjct: 290 ITPHLMQAELWKRSGHWDNYRENMFFLQ-VEDKDYAVKPMNCPGHILIYNSKVRSYRDLP 348

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F+++   +R E     +G+ R+R F   DA+ F    +        +      +    
Sbjct: 349 LRFFEMGTVYRYERSGVLYGLERARGFTQDDAHIFCTQEQLEDE-IKGVLDFVFYMLDSF 407

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           GLK   +   + P     S E                   +    +     + +     I
Sbjct: 408 GLKDYVVTLSTKPEKYIGSDE-----------------IWEKATQALKNALESVGIDYRI 450

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    DV  + L   L +  +     ++    F    ++ L   A       K
Sbjct: 451 AEGEGAFYGPKIDVGLKGL---LGKMWQGPTIQVD----FNLPERFDLTYDA--PDGTKK 501

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              +   +      R +  +IE       +                    +   +  E +
Sbjct: 502 RPVMIHRAILGSYERFIGILIEHYGGRFPLWLAPEQVRILPI-------SEKHNEYAEYV 554

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L         D    ++  +   A     P   IVG K   + KV ++         
Sbjct: 555 LRTLRDNEIRAEIDKDQAKLNYKLRKAIAEKVPYIFIVGDKEKEEGKVSVRIH-NKDLGV 613

Query: 429 MSLEEVINYASHRFSNNR 446
             L  VI        + +
Sbjct: 614 FDLSYVIAKLLEEIKSKK 631


>gi|241190576|ref|YP_002967970.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241195982|ref|YP_002969537.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|240248968|gb|ACS45908.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250536|gb|ACS47475.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|295793563|gb|ADG33098.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis V9]
          Length = 605

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 103/284 (36%), Positives = 154/284 (54%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG   L+ +  +IREE 
Sbjct: 6   RMSTLFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLAVLNKIEDVIREEI 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +  
Sbjct: 66  NGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDM 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y
Sbjct: 126 YSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTVDEEGMRQAYMDERGAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + + +T   +
Sbjct: 186 ERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEALHTPAVE 245

Query: 242 IISLNSIVE--QWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
            +  +   +  +   P A T D          P       +  +
Sbjct: 246 AVDCSQTPDATKRATPNARTIDEMIAFANAEYPREDGRDWQASD 289



 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 2/172 (1%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+
Sbjct: 430 GSGPLSFERGVEIGQVFQLGLKYSEALDLKVLNQNGKTVPVWMGCYGIGVSRVLACIAET 489

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
            HD KG+ WP ++AP ++ ++     D+   +A E++   LS  G +V +DD      G 
Sbjct: 490 HHDDKGLAWPMNIAPAQVHVMATG-KDEAAFEAAERLVDELSANGIEVLYDDRRKVSPGV 548

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +F  A+L+G P+  + G   V++  +E++ R     E++S++ V      R 
Sbjct: 549 KFKDAELIGVPIIAVAGRDTVNNGTIEVRDRDGSNSENISVDSVAQVIVDRV 600


>gi|306836251|ref|ZP_07469233.1| threonine--tRNA ligase [Corynebacterium accolens ATCC 49726]
 gi|304567843|gb|EFM43426.1| threonine--tRNA ligase [Corynebacterium accolens ATCC 49726]
          Length = 687

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 60/448 (13%), Positives = 134/448 (29%), Gaps = 47/448 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L +    +   G   + P G      +    R    + G   ++
Sbjct: 260 EEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPNGATVRMEMENHSRNRHVQAGYSFVN 318

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRND------------KAMIYGPTHEEVMTDIF 118
            P +   DL+ +SG  D Y   M      +             +     P +  +   IF
Sbjct: 319 TPHITKGDLFRKSGHLDFYSDGMFPPMQLDGEYDAEGNAVKEPQDYYAKPMNCPMHNLIF 378

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            S  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +  +    ++
Sbjct: 379 ASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTEEQLEEEL-TQV 437

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               + +    GL    +   +                    +   S +  +       +
Sbjct: 438 LDFIISLLEDYGLSDFYLELST----------------KDPNKFVGSDEIWERSTAILQS 481

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +          +  A Y       + +  D++    ++S   ++    F    ++ L 
Sbjct: 482 VAEKSGLELVPDPEGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLPERFELE 534

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +A+      K   + +     G++     V+   + G    W        I +      
Sbjct: 535 YTAS---DGTKKRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVMGIPVA----- 586

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   E + A+L + G     D   +++  +         P  ++ G++      V 
Sbjct: 587 -DDFVPHLEGVAAKLRRKGIRADVDTSDDRMQKKIRNHTTGKVPFMLVDGARDAEAGAVS 645

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            +         + ++E +   S   +  
Sbjct: 646 FRFLDGTQVNGVPVDEAVELISTWVAER 673


>gi|325685949|gb|EGD28012.1| proline--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 565

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 106/265 (40%), Positives = 145/265 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA   SH++MLR G I Q + G+YS+LPLG K L     II EE
Sbjct: 1   MRQSIFFMPTLKETPADAVAKSHQVMLRGGYIRQVTAGVYSYLPLGYKVLRKTEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +EM +P +  A +W ESGR   YG EM RL DR+ + M+ GPTHEE  TD+   
Sbjct: 61  MANAGVVEMIMPHMLPASMWEESGRLPKYGPEMFRLKDRHGREMLLGPTHEETFTDVVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  + E     ++    +
Sbjct: 121 SLKSYKQMPLHLYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAASQEQLDKQFDNEKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF R G++  P+ A+SG +GG  S EF   A  GE  +  +               D
Sbjct: 181 YLKIFKRTGVEVRPVIADSGTMGGKNSIEFQAPAAVGEDTIATNASGTYAANLEMAVSVD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                   ++          D  ++
Sbjct: 241 TFKQEPEELKAMEKVATPGCDSIDK 265



 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/193 (32%), Positives = 98/193 (50%), Gaps = 3/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A   V NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 376 DFKVDRFADLRVANEGEPDPVDHEPLKFTTSIEVGHIFKLGTYYTETMGAKFLDQNGKSQ 435

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++AV+E      G+ WP  +APF I +I +K  D++     E + A
Sbjct: 436 PVIMGSYGIGVTRLLSAVVEQYATENGVAWPKEIAPFGIHIIQMKMKDEIQSKLAEDLEA 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +      DV +DD  E+ G +F  ADL+G P+++ VG +  +D  VE+K       + ++
Sbjct: 496 KF--AKYDVLYDDRNERPGVKFNDADLVGAPIRITVG-RDAADGIVEVKRPGDDQAQKLA 552

Query: 431 LEEVINYASHRFS 443
           + ++ ++ ++   
Sbjct: 553 VADLEDFIANELD 565


>gi|312132685|ref|YP_004000024.1| thrs [Bifidobacterium longum subsp. longum BBMN68]
 gi|322689212|ref|YP_004208946.1| threonyl-tRNA synthase [Bifidobacterium longum subsp. infantis
           157F]
 gi|311773642|gb|ADQ03130.1| ThrS [Bifidobacterium longum subsp. longum BBMN68]
 gi|320460548|dbj|BAJ71168.1| threonyl-tRNA synthase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 677

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 59/461 (12%), Positives = 129/461 (27%), Gaps = 54/461 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEKDADGNITKPGADYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 420

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 421 DEL-TSLLTFVLNLLKDFGLTDFYLELST----------------KDPNKYVGSDEIWEE 463

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +      +            A Y       + +  D++    +VS   ++    F  
Sbjct: 464 ATNTLAEVAKESNLELVDDPCGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 516

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++       +   DG           +   R +   IE         +  +   +   
Sbjct: 517 PERF----QLEYIAKDGT------HQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAP 566

Query: 351 LINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  +     V  +    +      L         D   ++ G +   A     P  +IVG
Sbjct: 567 VQVLGV--PVADEFAPHLAGFVKSLEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVG 624

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            + ++++ V  + R       + +++              V
Sbjct: 625 EEDMNNNAVSFRFRDGSQLNGVPVDKAREQILTVIKKRVQV 665


>gi|219682056|ref|YP_002468440.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|254783513|sp|B8D730|SYT_BUCAT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219621789|gb|ACL29945.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311085869|gb|ADP65951.1| threonyl-tRNA synthetase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086439|gb|ADP66520.1| threonyl-tRNA synthetase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087022|gb|ADP67102.1| threonyl-tRNA synthetase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087587|gb|ADP67666.1| threonyl-tRNA synthetase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 642

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 141/441 (31%), Gaps = 42/441 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +L  L+   RD       L L    + + S G+  W   G    + +   +R +      
Sbjct: 235 YLNELE--KRDHRKIGKFLQLY--HMQEESPGMIFWHNKGWIIFNELQNFVRVKLKEYKY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P L    +W +SG +D+Y   +        +     P +      IF S +KSYR
Sbjct: 291 EEVKTPLLIDKLIWKQSGHWDNYKNAIFT-TLSEHREYCIKPMNCPGHVQIFNSRLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F    +      N        ++
Sbjct: 350 DLPIRMAEFGSCHRNEPSGSLHGLMRVRNFTQDDAHIFCTREQVRSE-INDCIKMIYDLY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                K I ++  + P                      +    +      +    +    
Sbjct: 409 STFHFKKILVKLSTRPEKR-----------------IGTDSLWNESEKDLSDMLIENHLS 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                   A Y    +     L DSL  N +     ++    FY   + S      +   
Sbjct: 452 FEYQSGEGAFYGPKIEFI---LQDSLDRNWQCGTIQLD----FYLPLRLSSF----YINE 500

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +    +G++     ++     G    W   V    IS+ +I +        
Sbjct: 501 KNEKKVPVIIHRAILGSIERFIGILIEECSGNLPTWLSPVQVVIISITDISSG------Y 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++++ + S V   +  D   E+IG +     L   P  +I G K  S  K+ +++R   
Sbjct: 555 VKELFKKFSDVNIRIECDLRNEKIGFKIREHTLRRIPYILICGEKESSSKKISVRNRQGH 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
               + ++  I          
Sbjct: 615 NFGMIDVDFFIKKLQKEIITR 635


>gi|189200603|ref|XP_001936638.1| threonyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187983737|gb|EDU49225.1| threonyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 768

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 81/479 (16%), Positives = 147/479 (30%), Gaps = 64/479 (13%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  L  L+E   RD      +  L     H+ S G   +LP GQ   + + A +REE   
Sbjct: 312 QAHLKFLEEAAKRDHRKIGKEQELF--FFHEFSPGSCFFLPHGQIIYNTLQAFLREEYWN 369

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW  SG +  Y  +M    D   +     P +      IF+   +
Sbjct: 370 RGYQEVGSPNMYNSALWKISGHWQHYADDMFTF-DVEKEKWALKPMNCPGHCLIFKHRER 428

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP       +  R+E      G+ R R F   D + F    + ++   + +F    
Sbjct: 429 SYRELPIRMADFGILHRNEASGALTGLTRVRRFQQDDTHVFCTQDQITEE-ISALFDFLR 487

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G      +  + P G     E    A+                  + N      
Sbjct: 488 AVYGKFGFTFKM-KLSTRPEGFLGDIETWDKAEAKL-------------TEALNQFTAAG 533

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSA 300
            S   +     A Y    D+    + D+L    + +   ++      F      S  +  
Sbjct: 534 GSAWELNPGDGAFYGPKIDI---TISDALKREFQCATIQLDFQLPNQFELEYMTSEVIPV 590

Query: 301 TFKG-----------------------------ADGKDHYVQMGSYGIGAMRVVAAVIES 331
             K                                G    V +     G+     A++  
Sbjct: 591 KNKDQPQEGGHIEQKKEKLEGADVTIPKKIKEPQPGYARPVMIHRAIYGSFERFIAILTE 650

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
              G+   W        I ++          D  +++ A L K       D  G  +  +
Sbjct: 651 HFAGRWPFWLSPRQVMVIPVMP------GANDYVKEVQAELRKHRLHADIDISGNTMQKK 704

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
              A L  +   ++VG++      V  ++R     +     + L+E +          R
Sbjct: 705 IRTAQLALYNFIMVVGAEEQQARAVNWRNRDDQETQQRGVIVPLDEAVKKLVELRDERR 763


>gi|332672963|gb|AEE69780.1| threonine--tRNA ligase [Helicobacter pylori 83]
          Length = 612

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 151/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGMELGLFS-FDDEIGVGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F    +      + +     +I
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSE-VSAILDFTHKI 383

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G         + P                           +    +      +   
Sbjct: 384 MQAFGFSYEM-ELSTRPAKS-----------------IGDDKVWEKATNALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 EHNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEALKKHDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVESEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|291395207|ref|XP_002714160.1| PREDICTED: threonyl-tRNA synthetase-like [Oryctolagus cuniculus]
          Length = 723

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 150/447 (33%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNTLMEFIRSE 363

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 364 YRKRGFQEVVTPNIYNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 422

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 423 RPRSWRELPLRVADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 481

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +++  G         + P       E    A+                        
Sbjct: 482 FLRTVYNVFGFSFKLN-LSTRPEKFLGDIEVWNQAEK-----------------QLENSL 523

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    +++L   
Sbjct: 524 NEFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRFNLTFV 576

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ ++ +     
Sbjct: 577 SH--DGDDKKRPVIIHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP--- 628

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C +  +K+  +          D D G  +  +   A L  +   ++VG K  +   V I
Sbjct: 629 TCDEYAQKVRQQFHDAKFMADIDLDAGCTLNKKIRNAQLAQYNFILVVGEKEKTSGTVNI 688

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   +  + ++ E I        + 
Sbjct: 689 RTRDNKVHGERTISETIERLQQLKQSR 715


>gi|171742906|ref|ZP_02918713.1| hypothetical protein BIFDEN_02023 [Bifidobacterium dentium ATCC
           27678]
 gi|171278520|gb|EDT46181.1| hypothetical protein BIFDEN_02023 [Bifidobacterium dentium ATCC
           27678]
          Length = 708

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 65/459 (14%), Positives = 135/459 (29%), Gaps = 50/459 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 273 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 331

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 332 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPAMRLDEEKDENGNIIKQGFDYYLKPMNC 391

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 392 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 451

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 452 DEL-KNLLTFVLGLLKDFGLDDFYLELST----------------KDPHKYVGSDEIWEE 494

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +      +            A Y       + +  D++    +VS   ++    F  
Sbjct: 495 ATNTLAEVAKESGLELVDDPCGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 547

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
             ++       +  ADG       +     G++    AV+   + G    W   V    +
Sbjct: 548 PERF----KLEYIAADGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAPVQVLGV 603

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +              ++  A L +       D   ++ G +   A     P  +IVG +
Sbjct: 604 PVA------DEFAPHLQRFIASLEEETVRCEIDMSDDRFGKKIRNASKSKVPFILIVGEE 657

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            ++++ V  + R       + ++E  N           V
Sbjct: 658 DMNNNAVSFRFRDGSQLNGVPVDEAKNQIMTVLRKRVQV 696


>gi|330936741|gb|EGH40917.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 548

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 108/214 (50%), Positives = 150/214 (70%), Gaps = 1/214 (0%)

Query: 24  KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           +LMLR GMI + + G+Y+WLP+G + L  V AI+REE +  GA+E+ +P +Q A+LW ES
Sbjct: 1   QLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREEMDAAGALEILMPGIQPAELWQES 60

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           GR++ YG E++RL DR+++    GPTHEEV+TD+ R+ + SY+ LP   YQIQ KFRDE+
Sbjct: 61  GRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARNELNSYKQLPINLYQIQTKFRDEI 120

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RPRFG+MR REF+MKDAYSF    E  + +Y++M ++Y  IF RLGLK  P+ A++G IG
Sbjct: 121 RPRFGLMRGREFVMKDAYSFHADHESLQVTYDRMHLAYSNIFTRLGLKFRPVEADNGSIG 180

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           G  SHEF VLA++GE  +  S    D+    E  
Sbjct: 181 GAGSHEFHVLAESGEDDIVFSD-GSDYAANIEKA 213



 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D      +  +   P    +D+ N    D  P+ K      RGIEVGHIF  GTKYS  M
Sbjct: 341 DDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGTKYSEAM 400

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                G +GK   + MG YGIG  RVVAA IE + D  GIIW D++APF+I+L+ ++   
Sbjct: 401 KCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTLAPFQIALVPLRYET 460

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P +++V  + +++  +
Sbjct: 461 DAVREATDKLYADLTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLAEGNL 520

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           E K R     + +++ +V+++   + +
Sbjct: 521 EYKSRTESQPQAIAVADVLSFIQGKVN 547


>gi|289178315|gb|ADC85561.1| Prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 615

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 103/284 (36%), Positives = 154/284 (54%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG   L+ +  +IREE 
Sbjct: 16  RMSTLFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLAVLNKIEDVIREEI 75

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +  
Sbjct: 76  NGIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDM 135

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y
Sbjct: 136 YSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTVDEEGMRQAYMDERGAY 195

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + + +T   +
Sbjct: 196 ERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEALHTPAVE 255

Query: 242 IISLNSIVE--QWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
            +  +   +  +   P A T D          P       +  +
Sbjct: 256 AVDCSQTPDATKRATPNARTIDEMIAFANAEYPREDGRDWQASD 299



 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 2/172 (1%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+
Sbjct: 440 GSGPLSFERGVEIGQVFQLGLKYSEALDLKVLNQNGKTVPVWMGCYGIGVSRVLACIAET 499

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
            HD KG+ WP ++AP ++ ++     D+   +A E++   LS  G +V +DD      G 
Sbjct: 500 HHDDKGLAWPMNIAPAQVHVMATG-KDEAAFEAAERLVDELSANGIEVLYDDRRKVSPGV 558

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +F  A+L+G P+  + G   V++  +E++ R     E++S++ V      R 
Sbjct: 559 KFKDAELIGVPIIAVAGRDTVNNGTIEVRDRDGSNSENISVDSVAQVIVDRV 610


>gi|15616745|ref|NP_239957.1| threonyl-tRNA synthetase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11134938|sp|P57225|SYT_BUCAI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|25292947|pir||C84944 threonine-tRNA ligase (EC 6.1.1.3) [imported] - Buchnera sp.
           (strain APS)
 gi|10038808|dbj|BAB12843.1| threonyl-tRNA synthetase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 642

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 141/441 (31%), Gaps = 42/441 (9%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +L  L+   RD       L L    + + S G+  W   G    + +   +R +      
Sbjct: 235 YLNELE--KRDHRKIGKFLQLY--HMQEESPGMIFWHNKGWIIFNELQNFVRVKLKEYKY 290

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P L    +W +SG +D+Y   +        +     P +      IF S +KSYR
Sbjct: 291 EEVKTPLLIDKLIWKQSGHWDNYKNAIFT-TLSEHREYCIKPMNCPGHVQIFNSRLKSYR 349

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F    +      N        ++
Sbjct: 350 DLPIRMAEFGSCHRNEPSGSLHGLMRVRNFTQDDAHIFCTREQVRSE-INDCIKMIYDLY 408

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                K I ++  + P                      +    +      +    +    
Sbjct: 409 STFHFKKILVKLSTRPEKR-----------------IGTDSLWNESEKDLSDMLIENHLS 451

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                   A Y    +     L DSL  N +     ++    FY   + S      +   
Sbjct: 452 FEYQSGEGAFYGPKIEFI---LQDSLDRNWQCGTIQLD----FYLPLRLSSF----YINE 500

Query: 306 DGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             +    V +    +G++     ++     G    W   V    IS+ +I +        
Sbjct: 501 KNEKKVPVIIHRAILGSIERFIGILIEECSGNLPTWLSPVQVVIISITDISSG------Y 554

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++++ + S V   +  D   E+IG +     L   P  +I G K  S  K+ +++R   
Sbjct: 555 VKELFKKFSDVNIRIECDLRNEKIGFKIREHTLRRIPYILICGEKESSSKKISVRNRQGH 614

Query: 425 IREDMSLEEVINYASHRFSNN 445
               + ++  I          
Sbjct: 615 NFGMIDVDFFIKKLQKEIITR 635


>gi|296454199|ref|YP_003661342.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183630|gb|ADH00512.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 677

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 59/461 (12%), Positives = 129/461 (27%), Gaps = 54/461 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEKDADGNITKPGADYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 420

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 421 DEL-TSLLTFVLNLLKDFGLTDFYLELST----------------KDPNKYVGSDEIWEE 463

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +      +            A Y       + +  D++    +VS   ++    F  
Sbjct: 464 ATNTLAEVAKESNLELVDDPCGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 516

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++       +   DG           +   R +   IE         +  +   +   
Sbjct: 517 PERF----QLEYIAKDGT------HQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAP 566

Query: 351 LINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  +     V  +    +      L         D   ++ G +   A     P  +IVG
Sbjct: 567 VQVLGV--PVADEFAPHLAGFVKSLEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVG 624

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            + ++++ V  + R       + +++              V
Sbjct: 625 EEDMNNNAVSFRFRDGSQLNGVPVDKAREQILTVIKKRVQV 665


>gi|300812560|ref|ZP_07092977.1| proline--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496433|gb|EFK31538.1| proline--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 565

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 106/265 (40%), Positives = 145/265 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA   SH++MLR G I Q + G+YS+LPLG K L     II EE
Sbjct: 1   MRQSIFFMPTLKETPADAVAKSHQVMLRGGYIRQVTAGVYSYLPLGYKVLRKTEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +EM +P +  A +W ESGR   YG EM RL DR+ + M+ GPTHEE  TD+   
Sbjct: 61  MANAGVVEMIMPHMLPASMWEESGRLPKYGPEMFRLKDRHGREMLLGPTHEETFTDVVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  + E     ++    +
Sbjct: 121 SLKSYKQMPLHLYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAASQEQLDKQFDDEKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF R G++  P+ A+SG +GG  S EF   A  GE  +  +               D
Sbjct: 181 YLKIFKRTGVEVRPVIADSGTMGGKNSIEFQAPAAVGEDTIATNASGTYAANLEMAVSVD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                   ++          D  ++
Sbjct: 241 TFKQEPEELKAMEKVATPGCDSIDK 265



 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 3/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            + A   A   V NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 376 DFKADRFADLRVANEGEPDPVDHEPLKFTTSIEVGHIFKLGTYYTETMGAKFLDQNGKSQ 435

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++AV+E      G+ WP  + PF I +I +K  D++     E + A
Sbjct: 436 PVIMGSYGIGVTRLLSAVVEQHATENGVAWPKEITPFGIHIIQMKMKDEIQSKLAEDLEA 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +      DV +DD  E+ G +F  ADL+G P+++ VG +  +D  VE+K       + ++
Sbjct: 496 KF--AKYDVLYDDRNERPGVKFNDADLVGAPIRITVG-RDAADGIVEVKRPGDDQAQKLA 552

Query: 431 LEEVINYASHRFS 443
           + ++ ++ +    
Sbjct: 553 VTDLEDFIASELD 565


>gi|254692871|ref|NP_001157090.1| threonyl-tRNA synthetase, mitochondrial isoform 3 [Mus musculus]
          Length = 642

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 83/451 (18%), Positives = 143/451 (31%), Gaps = 57/451 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      +  L     H+ S G   +LP G +  + + A IR E  R G  E+  PTL 
Sbjct: 224 RDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFSEVKTPTLF 281

Query: 76  SADLWVESGRYDSYGKEMLRLAD----------------RNDKAMIYGPTHEEVMTDIFR 119
           S  LW +SG ++ Y  +M  L                       +   P +      +F 
Sbjct: 282 STKLWEQSGHWEHYRADMFSLKPPGTDGVDNSQSGHPARCPKDTLALKPMNCPAHCLMFA 341

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +S+R LP          R E      G+ R   F   DA+ F   P   +       
Sbjct: 342 HRPRSWRELPVRLADFGALHRAEASGSLGGLTRLWRFQQDDAHIFCA-PHQLEAEIQGCL 400

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++  LG                    F +   T            D         
Sbjct: 401 DFLRCVYSVLGFS------------------FHLALSTRPPGFLGEPRLWDQAEQVLQQA 442

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +       +     A Y    DVH   L D+L    +     ++    F    ++    
Sbjct: 443 LEKFGEPWDLNPGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPLRFD--- 492

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +KG  G  +  V +    +G++  +  V+    +  G  WP  ++P ++ +I ++  
Sbjct: 493 -LQYKGPAGTPECPVLIHRAVLGSVERLLGVLA---ESCGGKWPLWLSPLQVVVIPVRTE 548

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   +   ++   L   G     D D G  +  +   A L  +  Q +VG +  S   V
Sbjct: 549 QE---EYARQVQQCLQAAGLVSDLDADSGLTLSRRVRRAQLAHYNFQFVVGQREQSQRTV 605

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++ R      +  L E +       +   P
Sbjct: 606 NVRTRDNRQLGERDLAESVQRLLELQNARVP 636


>gi|148706886|gb|EDL38833.1| threonyl-tRNA synthetase-like 1 [Mus musculus]
          Length = 630

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 83/451 (18%), Positives = 143/451 (31%), Gaps = 57/451 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      +  L     H+ S G   +LP G +  + + A IR E  R G  E+  PTL 
Sbjct: 212 RDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFSEVKTPTLF 269

Query: 76  SADLWVESGRYDSYGKEMLRLAD----------------RNDKAMIYGPTHEEVMTDIFR 119
           S  LW +SG ++ Y  +M  L                       +   P +      +F 
Sbjct: 270 STKLWEQSGHWEHYRADMFSLKPPGTDGVDNSQSGHPARCPKDTLALKPMNCPAHCLMFA 329

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +S+R LP          R E      G+ R   F   DA+ F   P   +       
Sbjct: 330 HRPRSWRELPVRLADFGALHRAEASGSLGGLTRLWRFQQDDAHIFCA-PHQLEAEIQGCL 388

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++  LG                    F +   T            D         
Sbjct: 389 DFLRCVYSVLGFS------------------FHLALSTRPPGFLGEPRLWDQAEQVLQQA 430

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +       +     A Y    DVH   L D+L    +     ++    F    ++    
Sbjct: 431 LEKFGEPWDLNPGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPLRFD--- 480

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +KG  G  +  V +    +G++  +  V+    +  G  WP  ++P ++ +I ++  
Sbjct: 481 -LQYKGPAGTPECPVLIHRAVLGSVERLLGVLA---ESCGGKWPLWLSPLQVVVIPVRTE 536

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   +   ++   L   G     D D G  +  +   A L  +  Q +VG +  S   V
Sbjct: 537 QE---EYARQVQQCLQAAGLVSDLDADSGLTLSRRVRRAQLAHYNFQFVVGQREQSQRTV 593

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++ R      +  L E +       +   P
Sbjct: 594 NVRTRDNRQLGERDLAESVQRLLELQNARVP 624


>gi|254692865|ref|NP_082207.2| threonyl-tRNA synthetase, mitochondrial isoform 1 [Mus musculus]
 gi|118597388|sp|Q3UQ84|SYTM_MOUSE RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; AltName:
           Full=Threonyl-tRNA synthetase-like 1; Flags: Precursor
 gi|74216488|dbj|BAE25159.1| unnamed protein product [Mus musculus]
 gi|187956085|gb|AAI47502.1| Threonyl-tRNA synthetase 2, mitochondrial (putative) [Mus musculus]
          Length = 723

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 83/451 (18%), Positives = 143/451 (31%), Gaps = 57/451 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      +  L     H+ S G   +LP G +  + + A IR E  R G  E+  PTL 
Sbjct: 305 RDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFSEVKTPTLF 362

Query: 76  SADLWVESGRYDSYGKEMLRLAD----------------RNDKAMIYGPTHEEVMTDIFR 119
           S  LW +SG ++ Y  +M  L                       +   P +      +F 
Sbjct: 363 STKLWEQSGHWEHYRADMFSLKPPGTDGVDNSQSGHPARCPKDTLALKPMNCPAHCLMFA 422

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +S+R LP          R E      G+ R   F   DA+ F   P   +       
Sbjct: 423 HRPRSWRELPVRLADFGALHRAEASGSLGGLTRLWRFQQDDAHIFCA-PHQLEAEIQGCL 481

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++  LG                    F +   T            D         
Sbjct: 482 DFLRCVYSVLGFS------------------FHLALSTRPPGFLGEPRLWDQAEQVLQQA 523

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +       +     A Y    DVH   L D+L    +     ++    F    ++    
Sbjct: 524 LEKFGEPWDLNPGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPLRFD--- 573

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +KG  G  +  V +    +G++  +  V+    +  G  WP  ++P ++ +I ++  
Sbjct: 574 -LQYKGPAGTPECPVLIHRAVLGSVERLLGVLA---ESCGGKWPLWLSPLQVVVIPVRTE 629

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   +   ++   L   G     D D G  +  +   A L  +  Q +VG +  S   V
Sbjct: 630 QE---EYARQVQQCLQAAGLVSDLDADSGLTLSRRVRRAQLAHYNFQFVVGQREQSQRTV 686

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++ R      +  L E +       +   P
Sbjct: 687 NVRTRDNRQLGERDLAESVQRLLELQNARVP 717


>gi|12847728|dbj|BAB27683.1| unnamed protein product [Mus musculus]
          Length = 723

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 83/451 (18%), Positives = 143/451 (31%), Gaps = 57/451 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      +  L     H+ S G   +LP G +  + + A IR E  R G  E+  PTL 
Sbjct: 305 RDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFSEVKTPTLF 362

Query: 76  SADLWVESGRYDSYGKEMLRLAD----------------RNDKAMIYGPTHEEVMTDIFR 119
           S  LW +SG ++ Y  +M  L                       +   P +      +F 
Sbjct: 363 STKLWEQSGHWEHYRADMFSLKPPGTDGVDNSQSGHPARCPKDTLALKPMNCPAHCLMFA 422

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +S+R LP          R E      G+ R   F   DA+ F   P   +       
Sbjct: 423 HRPRSWRELPVRLADFGALHRAEASGSLGGLTRLWRFQQDDAHIFCA-PHQLEAEIQGCL 481

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++  LG                    F +   T            D         
Sbjct: 482 DFLRCVYSVLGFS------------------FHLALSTRPPGFLGEPRLWDQAEQVLQQA 523

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +       +     A Y    DVH   L D+L    +     ++    F    ++    
Sbjct: 524 LEKFGEPWDLNPGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPLRFD--- 573

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +KG  G  +  V +    +G++  +  V+    +  G  WP  ++P ++ +I ++  
Sbjct: 574 -LQYKGPAGTPECPVLIHRAVLGSVERLLGVLA---ESCGGKWPLWLSPLQVVVIPVRTE 629

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   +   ++   L   G     D D G  +  +   A L  +  Q +VG +  S   V
Sbjct: 630 QE---EYARQVQQCLQAAGLVSDLDADSGLTLSRRVRRAQLAHYNFQFVVGQREQSQRTV 686

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++ R      +  L E +       +   P
Sbjct: 687 NVRTRDNRQLGERDLAESVQRLLELQNARVP 717


>gi|303277979|ref|XP_003058283.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460940|gb|EEH58234.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 725

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 150/442 (33%), Gaps = 41/442 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  +Y L I +   RD  +    L          S G   +LP G    +N+   I+E+
Sbjct: 283 MK--EYKLRIEEAKKRDHRVLG--LHQELFFFDILSPGSCFFLPDGATIYNNLINFIKEK 338

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P + + DLW  SG    Y + M       +      P +      +F  
Sbjct: 339 YWEYEYSEVVTPNIYNFDLWKTSGHAAHYKENMFSFNVEKE-EFGLKPMNCPGHCVMFGH 397

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+E      G+ R R F   DA+ F    +      N M  
Sbjct: 398 RKRSFRELPMRLADFGVLHRNEFSGALHGLTRVRRFQQDDAHIFCRPDQMEHELVNFMK- 456

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +L   + +   +  M+  + P G     E    A+                  +     
Sbjct: 457 -FLDEVYEVFGLTYEMKLSTRPEGYLGELEVWNQAED-----------------ALRNAL 498

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +       +     A Y    D+    +FD+L    + +   ++    F    +++L   
Sbjct: 499 NKSGKEWKLNPGDGAFYGPKIDI---TVFDALKRRFQCATVQLD----FQLPIRFNLSY- 550

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                 +     + +    +G++  + A++     GK   W           + +    +
Sbjct: 551 --VTENNEPARPIIIHRAILGSVERMFAILTEHFAGKYPYW------LSPKQVMLVPISE 602

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             R+   ++  +L K G     D+   ++  +   A L  +   ++VG    ++  V ++
Sbjct: 603 ASREYALEVKKQLRKAGHHAQVDETDRKMQKKVREAQLEHWNYILVVGEGEKTNRTVNVR 662

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R   +  ++ LEE++   +  
Sbjct: 663 TRDNVVHGEVKLEELMTVLNEE 684


>gi|325957052|ref|YP_004292464.1| prolyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|325333617|gb|ADZ07525.1| prolyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
          Length = 565

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 109/265 (41%), Positives = 148/265 (55%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L    AII +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEAIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDRINVPEMIMPHLLPATLWQESGRYKKYGPEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     +N    +
Sbjct: 121 NLKSYKQMPMALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFNDQENA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  +++             D
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNENGTYAANLEMAKSID 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                    ++ T       D   +
Sbjct: 241 TFKQDPEDPKELTKVSTPDCDTIEK 265



 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A   V NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFADLRVANEGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAQ 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++A +E     +G+ WP  +APF+I ++ +K +     +  EK+  
Sbjct: 435 PVIMGSYGIGVTRMLSAAVEQHLTERGVAWPKEIAPFEIHIVQMKMNKDDQTELAEKLEK 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           + S+   DV +DD  E+ G +FA ADL+G P+++ +G K  +D  VE+K        +MS
Sbjct: 495 KFSEK-YDVLYDDRKERAGVKFADADLVGAPIRITIGKK-AADGIVEVKRPTDAKATEMS 552

Query: 431 LEEVINYASHRF 442
           ++E+  + +   
Sbjct: 553 IDELDKFVNQEL 564


>gi|329767542|ref|ZP_08259065.1| prolyl-tRNA synthetase [Gemella haemolysans M341]
 gi|328835876|gb|EGF85598.1| prolyl-tRNA synthetase [Gemella haemolysans M341]
          Length = 566

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 123/411 (29%), Positives = 186/411 (45%), Gaps = 35/411 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S+ F+P  +E P  AE  SHKL+++ GM+ Q S G+Y+ LPL  + +  +  +IREE
Sbjct: 1   MRQSRTFIPTTREVPSSAEATSHKLLIKAGMVKQVSAGVYTHLPLATRVIQKIEKVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+E+ +P LQS + W +SGR++  G E++R+ DR +      PT EE++     +
Sbjct: 61  HEKIGAVELLMPILQSDEYWKKSGRWNKMGDELIRVTDRKNAGYALSPTAEEIICQTVSN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ KFRDE+RPR G++R +EF+MKD YSF  TPE  + +Y   + +
Sbjct: 121 MVTSYKQLPVNLYQIQTKFRDEIRPRLGLLRCKEFIMKDGYSFHDTPESLRETYKDYYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--- 237
           Y  IF R  LK   ++A+SG IGG  +HEF  LA+ GE  +  ++   D+    E     
Sbjct: 181 YSNIFDRFELKYRAVKADSGNIGGSYTHEFQALAEVGEDTIAYTE-ESDYAANIETAAVV 239

Query: 238 ----------DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-----PENKRVSARGI 282
                     +  +   L +  +Q     AA   V   +   +L      E   V  RG 
Sbjct: 240 EQNYTMPTGFEKKERSLLETPNQQTIDDIAAYCGVDVNRAMKALALKADGEFYLVLMRGN 299

Query: 283 EV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           +      F   T  S    AT +  +     V       G       VI  +        
Sbjct: 300 DQLNDIKFMKATGTSEVEMATEQEIEEVMGGVVGYMGPFGI--KNCKVIGDNAIKYMYNH 357

Query: 341 PDSVAPFKISLINIKAHDQVCRDACE-------KIYARLS-----KVGCDV 379
                      IN+   D       +        +   LS       G +V
Sbjct: 358 SCGANKKGFHYINVNPGDYEIDAHYDLRMIEEGDLAEDLSGPIKFAKGIEV 408



 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 97/165 (58%), Gaps = 1/165 (0%)

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                A+GIEVG +F  G  YS  M  T+  A+G+ ++  MG YGIG  RV++A+IE   
Sbjct: 398 GPIKFAKGIEVGQVFELGKGYSESMDITYLDANGRANHFYMGCYGIGVTRVISAIIEQHS 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D KGIIWP  VAP+++ L+ +    +      E++YA+L+  G +V +DD  E+ G +F 
Sbjct: 458 DDKGIIWPKEVAPYQVHLVCVDVKKEEQVKLSEELYAQLTAAGYEVLYDDRAERAGVKFN 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            ADL+G PLQV+VG K   +  VE+K R T  + D  + +V+   
Sbjct: 518 DADLIGIPLQVVVGKK-AGEGIVEVKERKTLEKVDTEVADVLAKV 561


>gi|168334535|ref|ZP_02692696.1| threonyl-tRNA synthetase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 635

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 157/447 (35%), Gaps = 35/447 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L         +G+   +P G K +  +   I + + 
Sbjct: 208 LTEYLAAVEEAKKRDHNKLGRELKLFAT-DETVGQGLPLIMPKGAKVIQTLQRWIEDLEE 266

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRS 120
             G +    P +   DL+  SG +  Y   M  +   +++D+ +   P        I++ 
Sbjct: 267 ENGYLLTKTPNMAKNDLYKISGHWSHYKDGMFVMGNEEKDDEIIALRPMTCPFQFMIYKQ 326

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  + +     R+E      G++R R+F + D +    TP+  +  +  +  
Sbjct: 327 EQHSYRDLPIRYAETATLARNESSGEMHGLIRVRQFTLADGHIVC-TPDQLETEFKNVVD 385

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I   LG            I  D+S+ F   +   + +   + +  +          
Sbjct: 386 LIKYIMKTLG------------IDKDISYRFSKWSPEFKEKYIDNPEAWETTETIMKNIL 433

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D +       E   A Y    DV  + +     +   +    I+           +   +
Sbjct: 434 DHLKIDYKEAENEAAFYGPKLDVQFKNVH---GKEDTIITVQIDFAL--------AERFN 482

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            T+  ADG+      +    +G      A++    +     +P  +AP  + ++ I    
Sbjct: 483 MTYVDADGEKKLPYIIHRSSLGCYERTLAMLI---EKYAGAFPTWLAPTAVKILPISDK- 538

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   ++ A L K    V  D   E+IG +   A     P  V+VG+  + +  V +
Sbjct: 539 --YADYAAEVAATLRKNKILVEIDQRTEKIGYKIREARNERVPYIVVVGADEMENKTVSV 596

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G     +L+      +   ++ 
Sbjct: 597 RSRQKGEEGVFALDVFAQRVADEIASK 623


>gi|283954167|ref|ZP_06371692.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
 gi|283794446|gb|EFC33190.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
          Length = 568

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 121/358 (33%), Positives = 181/358 (50%), Gaps = 14/358 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDAILPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E  +  +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLEREFELMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 181 YSQILQRMGLDFRAVEANSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAA--- 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +      E+  A YA+     N K  +SL           +   I  F T  ++   A
Sbjct: 237 KRVKKTCQDERPEANYASKFYTPNIKTIESL----------AQFFKINAFYTIKAVVKKA 286

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++       +   GS  +  ++   A              + V      +  I   D
Sbjct: 287 IYENESKLVVFFIRGSDDLQEVKAQNACNALELVNANEEELEKVGLTPGFIGFIGLKD 344



 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 346 DFYIDFELENEKQMIMGANEKDYHLVGIDVVNLNKDRFKDLVEVKQGDCCAKCGAKLKQS 405

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD KG I
Sbjct: 406 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGISRLLAVAIEANHDEKGCI 465

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W   +APF + +I     D+   +   K+Y  L+K+G +V  DD  E+ G +    +L+G
Sbjct: 466 WNKVLAPFVLEIIVSNIKDEKALEFANKLYEDLTKLGLEVLLDDRNERFGVKMNDFELMG 525

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  +++G K + +++VE+  R    +E + ++E++     + 
Sbjct: 526 FPYALVIG-KGLENNEVELIQREALTKELVKIDELMEILKKKV 567


>gi|282861434|ref|ZP_06270499.1| prolyl-tRNA synthetase [Streptomyces sp. ACTE]
 gi|282564092|gb|EFB69629.1| prolyl-tRNA synthetase [Streptomyces sp. ACTE]
          Length = 566

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 106/263 (40%), Positives = 151/263 (57%), Gaps = 4/263 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  +HKL++R G + + + G++SWLPLG+K L+NV+ ++REE 
Sbjct: 6   RMSRLMIKTLRDDPADAETLNHKLLVRAGYVRRTAAGLWSWLPLGKKVLENVSRVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+ +P L   + +  SGRYD YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGGQEVLLPALLPKEPYEASGRYDEYGDLLFRLRDRKGAEYLLGPTHEEIFTQVVKDM 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG   SY     +Y
Sbjct: 126 CSSYKDLPVILYQIQTKYRDEARPRAGVLRGREFQMKDSYSFDTTDEGLAESYQLHRAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +RIF RLGL    + A SG +GG  S EF+  A  GE       +  D+   +E   +  
Sbjct: 186 IRIFERLGLDHRIVSAVSGAMGGSASEEFLAPAPAGEDTFVDCPNC-DYAANTEAVTYVA 244

Query: 242 IISLNS---IVEQWTAPYAATSD 261
             +       VE+   P   T +
Sbjct: 245 TPAEAPAAGPVEELDTPDTPTIE 267



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 6/184 (3%)

Query: 261 DVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           DV   +  D  P         R IE+GHIF  G KY+   S    G  GK   V MGSYG
Sbjct: 385 DVVVVEPGDPCPRCGTGLQVDRAIEIGHIFQLGRKYADIFSLDVLGQQGKPVRVTMGSYG 444

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R VAA+ E + D KG+ WP  VAP  +    + A   +  +    +  +L   G  
Sbjct: 445 IGVSRAVAALAEQTADDKGLCWPREVAPADVH--VVAAGKALQTELALDVSEKLGAAGLR 502

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V  DD  G   G +F  ++L+G P  ++ G +      +E+K R TG RE+++++E +  
Sbjct: 503 VIVDDRAGVSPGVKFTDSELIGVPKILVAGRRSAE-GVLELKDRRTGEREELTVDEALAR 561

Query: 438 ASHR 441
            + +
Sbjct: 562 LTDQ 565


>gi|116748707|ref|YP_845394.1| prolyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
 gi|152112959|sp|A0LHQ7|SYP_SYNFM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116697771|gb|ABK16959.1| prolyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
          Length = 581

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 112/286 (39%), Positives = 160/286 (55%), Gaps = 4/286 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKYF+  L E P++AE  SH L+LR   IH  + G+YS LPLG +  + + AI+REE
Sbjct: 1   MRYSKYFIHTLFEVPKEAETPSHILLLRGCYIHPVAAGVYSLLPLGHRVAEKIKAILREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N    +E+++P L  A+LW +S RY   G+E+ R+ DR D+  +   THEEV+TDI R 
Sbjct: 61  LNAIEGLEVTMPVLNPAELWKKSSRYYDIGQELFRIKDRKDREFVLAMTHEEVITDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR+LP   YQIQ K RDE RPR G++R REF M DAYSF          Y ++F +
Sbjct: 121 FLRSYRHLPVMLYQIQTKIRDEARPRAGLLRVREFFMNDAYSFHPDFADLDAYYPRIFNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-- 238
           YLRIF R GL ++P+ A+SG +GG  SHEF++ +  GE +        D+   +E     
Sbjct: 181 YLRIFTRCGLTTVPIEADSGIMGGTGSHEFMLESPNGEDRFVVCTQC-DYRANTEKAQGL 239

Query: 239 -FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                 S ++       P      + +   F   PE++ +     E
Sbjct: 240 IPPVKYSGDAPPPMEAVPTPGIKTIADLMRFFDCPEDRLLKTVAYE 285



 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 103/203 (50%), Gaps = 5/203 (2%)

Query: 248 IVEQWTAPYAAT-SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS--LPMSATFKG 304
               +T   AA  ++V +        E      RGIE+GH F  GTKY+    M AT+  
Sbjct: 371 CGRDFTPFDAADLAEVRDGDRCTRCAEGILRIRRGIELGHTFKLGTKYTAAESMDATYLD 430

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           A G    V MG YGIG  R++A+ +E  HD  G+ +P S+APF++ L ++    +   +A
Sbjct: 431 AAGNQQRVVMGCYGIGVERLMASAVEQWHDEGGMSFPYSIAPFQVILCSLGRKPE-ILEA 489

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +Y RL     D  +DD  E  G +   ADLLG P++V+V  K +   +VEIK R TG
Sbjct: 490 AQALYERL-GAHYDTIYDDRDESPGVKLKDADLLGVPIRVVVSQKLLQKGEVEIKVRRTG 548

Query: 425 IREDMSLEEVINYASHRFSNNRP 447
           +      +E++       ++ +P
Sbjct: 549 VVIVCPRDELLETLERIVADLQP 571


>gi|320008235|gb|ADW03085.1| prolyl-tRNA synthetase [Streptomyces flavogriseus ATCC 33331]
          Length = 565

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 106/261 (40%), Positives = 147/261 (56%), Gaps = 1/261 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  +HKL++R G + + + GI+SWLPLG+K L+NV  ++REE 
Sbjct: 6   RMSRLMIKTLRDDPADAETLNHKLLVRAGYVRRTAAGIWSWLPLGKKVLENVTRVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+ +P L   + +  SGRYD YG  + RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAIGGQEVLLPALLPKEAYEASGRYDEYGDLLFRLQDRKGADYLLGPTHEEIFTQVVKDM 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR GV+R REF MKD+YSFD T EG   +Y     +Y
Sbjct: 126 CSSYKDLPVILYQIQTKYRDEARPRAGVLRGREFQMKDSYSFDTTDEGLAEAYQLHRAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFD 240
           +RIF RLGL    + A SG +GG  S EF+  A  GE   V C          +      
Sbjct: 186 IRIFERLGLDHRVVSAVSGAMGGSASEEFLAPAPAGEDTFVDCPNCDYAANTEAVTYKVT 245

Query: 241 DIISLNSIVEQWTAPYAATSD 261
            +      VE+   P   T +
Sbjct: 246 AVADAAGAVEELDTPDTPTIE 266



 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 6/176 (3%)

Query: 269 DSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P         R IE+GHIF  G KY+   S    G  GK   V MGSYGIG  R VA
Sbjct: 392 DPCPNCGTGLQVDRAIEIGHIFQLGRKYADIFSLDVLGQQGKPVRVTMGSYGIGVSRAVA 451

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-G 385
           A+ E + D KG+ WP  +AP  +    + A   +  +    +  +L+  G  V  DD  G
Sbjct: 452 ALAEQTADDKGLCWPREIAPADVH--VVAAGKALQTELALDVSEKLNAAGLRVLVDDRAG 509

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              G +F  ++L+G P  ++ G +      +E+K R TG RE+++++E I   + R
Sbjct: 510 VSPGVKFTDSELIGVPKILVAGRRSAE-GVLELKDRRTGEREELTVDEAIARLTDR 564


>gi|239621470|ref|ZP_04664501.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|239515931|gb|EEQ55798.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
          Length = 686

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 59/461 (12%), Positives = 128/461 (27%), Gaps = 54/461 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 251 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 309

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 310 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEKDADGNITKPGADYYLKPMNC 369

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 370 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 429

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 430 DEL-TSLLTFVLNLLKDFGLTDFYLELST----------------KDPNKYVGSDEIWEE 472

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +      +            A Y       + +  D++    +VS   ++    F  
Sbjct: 473 ATNTLAEVAKESNLELVDDPCGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 525

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++       +   DG           +   R +   IE         +  +   +   
Sbjct: 526 PERF----QLEYIAKDGT------HQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAP 575

Query: 351 LINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  +     V  +    +      L         D   ++ G +   A     P  +IVG
Sbjct: 576 VQVLGV--PVADEFAPHLAGFVKSLEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVG 633

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            + ++++ V  + R       + ++               V
Sbjct: 634 EEDMNNNAVSFRFRDGSQLNGVPVDTAREQILTVIKKRVQV 674


>gi|257076511|ref|ZP_05570872.1| threonyl-tRNA synthetase [Ferroplasma acidarmanus fer1]
          Length = 668

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 71/461 (15%), Positives = 153/461 (33%), Gaps = 38/461 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           + L   +   RD      ++ L T   ++ + G+  + P G    + +   ++E   ++G
Sbjct: 221 FLLRREEAIKRDHRKIGQEMDLFT-FDNERAPGMPFYAPNGAIIRNELINYMKELNEKSG 279

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+         +W +SG Y  Y  +M      N       P +      IF+  + SY
Sbjct: 280 WEEVWTAHAFKDIIWKQSGHYYKYKDDMFLFTLPNGDNYGLKPMNCPGHIAIFQRSVYSY 339

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R++P  + +    +R E      G+ R R F + D + F    +    + + + +     
Sbjct: 340 RDMPVKYSEAGTVYRYEKSGEMGGLTRPRGFTIDDGHGFVREDQIFDETISLLKIIPSIF 399

Query: 185 FHRLGLKSIPMRAESGP-----------IGGDLSHEFIVLADTGETQVFCS--------K 225
              LG + I                          +F++ A + E +             
Sbjct: 400 KTILGTEEITYDLSVMDKQHPENYLMSYECSSCGEKFMLRAASQEYKCPACGSENLNSDF 459

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
              D    +     +++    +      A Y    DVH   + D+L    ++S   I+  
Sbjct: 460 SMWDNATENLRRALEELKLKYTEYPGEAAFYGPKIDVH---IKDALGRLWQLSTIQIDFF 516

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
               F   Y                 V +     G+     A++    +GK  +W   + 
Sbjct: 517 MPANFDLYYIDKNDTKV-------RPVIIHRAIYGSYERFIAILLEHFNGKLPLWLTPLQ 569

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
            + I +       +   +   +I  +L + G     D     I  +  +   +     ++
Sbjct: 570 AYIIPV------SEAYNEYATEINKKLREKGIRSKVDISDGTISKKIKLIRTMRPSYILV 623

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           VG K ++++ V +++R    RE   ++E +   +      +
Sbjct: 624 VGEKELANNSVSVRNRKDKTRE-YGMDEFMGIMAEEIREKK 663


>gi|311064741|ref|YP_003971466.1| prolyl-tRNA synthetase ProS [Bifidobacterium bifidum PRL2010]
 gi|310867060|gb|ADP36429.1| ProS Prolyl-tRNA synthetase [Bifidobacterium bifidum PRL2010]
          Length = 616

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 100/237 (42%), Positives = 144/237 (60%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DA+  S KL+LR G + + + GI++WLPLG K L+ + AI+REE 
Sbjct: 17  RMSTMFLRTLREDPADADTDSAKLLLRAGYVRKAAPGIWTWLPLGLKVLNKIEAIVREEI 76

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  GA E+  P L   + +  + R++ YG+ + RL DR++   +  PTHEE+ T + +  
Sbjct: 77  DGIGAQEVHFPALLPREPYEATHRWEEYGENLFRLKDRHEADYLLAPTHEEMFTLLVKDM 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG K +Y     +Y
Sbjct: 137 YSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTIDEEGMKKAYYDERGAY 196

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + +  T 
Sbjct: 197 ERIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMAIGEDTFALAPSGKAWNVEALTTP 253



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 4/234 (1%)

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A   E   F     +           +        V         T +    +  D  P+
Sbjct: 380 AGVAEPVRFFIDAHVAEGTEWIIGGDEAGKHRFHAVYGRDFKADGTVEAVEVRHGDMSPD 439

Query: 274 N--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+
Sbjct: 440 GSGPLSFERGVEIGQVFQLGLKYSKALDLKVLDQNGKTVPVWMGCYGIGVSRVLACIAET 499

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGS 390
            HD +G+ W  +V       +     D    DA EK+ A L + G +V +DD  +   G 
Sbjct: 500 HHDERGLAW-PAVIAPAQVHVVATGKDAAAFDAAEKLVAELEERGIEVIYDDRKKVSPGV 558

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +F  A+L+G PL  + G   V++  +EI++R +     + + +     + R   
Sbjct: 559 KFKDAELIGVPLIAVAGRDTVNNGTIEIRNRDSSDSVAVPVADAAQTLASRLDT 612


>gi|111023830|ref|YP_706802.1| threonyl-tRNA synthetase [Rhodococcus jostii RHA1]
 gi|123339593|sp|Q0S1E2|SYT_RHOSR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110823360|gb|ABG98644.1| threonine--tRNA ligase [Rhodococcus jostii RHA1]
          Length = 685

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 62/444 (13%), Positives = 127/444 (28%), Gaps = 47/444 (10%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R+     G   ++ 
Sbjct: 257 EAERRDHRKLGSELDLFS-FPDELGSGLPVFHPRGGIIRTEMEDYSRKRHVEEGYEFVNT 315

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDIFR 119
           P +    L+  SG  D Y   M                 +  +     P +  +   IFR
Sbjct: 316 PHITKGHLYEVSGHLDWYRDGMFPAMHIDEELNEDGTVRKPGQDYYLKPMNCPMHNLIFR 375

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP   ++    +R E      G+ R R     DA+ +    +          
Sbjct: 376 SRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYCTREQMRDEL-ATTL 434

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    GL    +   +                    +        +    +    
Sbjct: 435 QFVLGLLKDYGLDDFYLELST----------------KNPDKFVGDDAVWEEATATLAEV 478

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +             A Y       + ++ D+L    ++S   ++    F    ++ L  
Sbjct: 479 AESSGLNLVPDPGGAAFYGPKI---SVQVQDALGRTWQMSTIQLD----FNLPERFDLEY 531

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A       K   V +     G++     V+   + G    W   V    I +       
Sbjct: 532 TA---NDGTKQRPVMIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPVA------ 582

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D    +  RL   G     D   +++  +         P  ++ G++ V    V  
Sbjct: 583 ETFADHLFDVVKRLKAAGVRAEVDASDDRMQKKIFNNTAQKVPFMLLAGARDVEAGAVSF 642

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R       + +++ +   +   
Sbjct: 643 RFRDGTQVNGVPVDDAVRIVTEWI 666


>gi|50364993|ref|YP_053418.1| threonyl-tRNA synthetase [Mesoplasma florum L1]
 gi|50363549|gb|AAT75534.1| threonyl-tRNA synthetase [Mesoplasma florum L1]
          Length = 644

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 61/435 (14%), Positives = 142/435 (32%), Gaps = 34/435 (7%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD  I +  L +  G  H    G+  W+P G    + +   ++E++     I ++ P + 
Sbjct: 240 RDHRIINKTLKIF-GFDHLVGPGLPLWMPNGTIVKEEIKKYLKEKEWEYDYINVTTPVIG 298

Query: 76  SADLWVESGRYDSYGKEMLRLADR---NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           + +L+ +SG +D YG++M +  +    +D+  I  P +      +++   +SYR+LP   
Sbjct: 299 TVELYKKSGHWDHYGEDMFQPFNGGSGSDEQFILRPMNCPHHVAVYKQEQRSYRDLPLRI 358

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
            +  L+ R E       +     +        + P+  +  +  ++     +     ++ 
Sbjct: 359 AEHALQHRYESSGSLTGLERVRAMELTDSHIFVRPDQVEAEFKSIYKLITEVLETFNIQI 418

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             +                        + +      D    +      D+          
Sbjct: 419 DYLSLSLRDPEDK-------------VKYYQDDKMWDEAEAALEKVLQDLNIDYKKCIGE 465

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-Y 311
            A Y    D+   ++  +      VS   ++    F            T+   + +    
Sbjct: 466 AAFYGPKLDI---QIKTAQNHEITVSTIQLD----FLLP----KKFDVTYIDQNQEFKAP 514

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + +    IG      A +     G   +W          +  I    +   +   ++  +
Sbjct: 515 IMIHRGLIGTYERFIATLLEQTKGVLPLWLA-----PNQIEIIPVGSEENIEYANEVKKQ 569

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K       D   E++  +   A     P Q+++G +   D+ V  +   +  +  + L
Sbjct: 570 LKKDFIRTHVDLRDERLSYKIRDAQTSKIPYQLVLGDQERKDNSVTYRQYGSEQQTTIKL 629

Query: 432 EEVINYASHRFSNNR 446
            E  N  +    N +
Sbjct: 630 NEFKNMITDLICNKK 644


>gi|313235460|emb|CBY19737.1| unnamed protein product [Oikopleura dioica]
          Length = 800

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 149/437 (34%), Gaps = 37/437 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L T      S G   WLP G    + +   IR E  + G  E+ 
Sbjct: 373 EEAKKRDHRRIGTQQELWT--FDPVSAGSCFWLPRGAVIYNRLQDFIRSEYRKRGFKEVV 430

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +++LW  SG +  Y  +M       D      P +      +F S ++SY+ LP 
Sbjct: 431 TPNIFNSELWKTSGHWQHYEDDMFTFK-VEDDKWAMKPMNCPGHCVMFGSRLRSYKELPL 489

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F    +  R+EL     G+ R R F   DA+ F    +            +  ++   G
Sbjct: 490 RFADFGVLHRNELSGALSGLTRVRRFQQDDAHIFCAREQIEGE-ITAALDFFKFVYDTFG 548

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                    + P             +    +V    +       + NT      +   + 
Sbjct: 549 FTFELN-LSTRP-------------EKYLGEVADWDEAEGMLKNALNTFCSTNETKWELN 594

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+   K+ D+L    +++   ++    F    ++       F   + ++
Sbjct: 595 PGDGAFYGPKIDI---KILDALKRRHQLATIQLD----FQLPQRF----KLKFVRDNKEE 643

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++    A++    +  G  WP  ++P ++ ++ I           + I 
Sbjct: 644 TPVMIHRAILGSIERCVAILT---ESFGGKWPFWLSPRQVRVVPIGKS---QVPFAQSIA 697

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L   G +   D D  +    +   A L  +   ++VG K +      ++ R       
Sbjct: 698 NKLFDAGLEAEADPDCADTFNYRIRRAQLEQWNFILVVGDKELEAGTCAVRTRDAQQHGV 757

Query: 429 MSLEEVINYASHRFSNN 445
           + ++ V++       N 
Sbjct: 758 LDVDFVVDELVRLHKNR 774


>gi|266623074|ref|ZP_06116009.1| threonine--tRNA ligase [Clostridium hathewayi DSM 13479]
 gi|288865169|gb|EFC97467.1| threonine--tRNA ligase [Clostridium hathewayi DSM 13479]
          Length = 691

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 76/435 (17%), Positives = 143/435 (32%), Gaps = 37/435 (8%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      +L L    +    +G+   +P G K +  +   I +E+ + G +    P + 
Sbjct: 281 RDHNKLGRELELFAT-VDVIGQGLPLLMPKGAKIIQTLQRWIEDEEEKRGYMRTKTPLMA 339

Query: 76  SADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
             DL+V S  +D Y + M      +++D+     P        +++   KSYR+LP  + 
Sbjct: 340 KKDLYVISDHWDHYKEGMFVLGDEEKDDEVFALRPMTCPFQYYVYKQSPKSYRDLPCRYG 399

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +    FR+E      G+ R R+F + + +   + P+  +  +             LGL+ 
Sbjct: 400 ETSTLFRNEDSGEMHGLTRVRQFTISEGH-LVVRPDQLEEEFKGCVDLAKYCLTTLGLEE 458

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                       D+++               + +  D    +     DDI    +     
Sbjct: 459 ------------DVTYRMSKWDPEKADHYLGNAEMWDEVEAAMRKILDDIGIEYTEEVGE 506

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  + ++      K  +   I            +     +F   DG     
Sbjct: 507 AAFYGPKLDIQAKNVY-----GKEDTMITI------QLDMFLAERFDMSFVDKDGTKKRP 555

Query: 313 QM-GSYGIGAMRVVAAVIESSHD-GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            +     +G      A +   ++                         +   D  EK+ +
Sbjct: 556 YIIHRTSMGCYERTLAWLIEKYEGAFPTWLCPEQVRVLPI-------SEKYHDYAEKVES 608

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G     D+  E+IG +   A L   P  ++VG K   D  V ++ R  G     S
Sbjct: 609 ELKSNGILATVDERAEKIGYKIREARLAKLPYMLVVGQKEEEDGLVSVRSRFNGDEGQKS 668

Query: 431 LEEVINYASHRFSNN 445
           L + I+  S      
Sbjct: 669 LSDFIDAISREIRTK 683


>gi|295693140|ref|YP_003601750.1| prolyl-tRNA synthetase [Lactobacillus crispatus ST1]
 gi|295031246|emb|CBL50725.1| Prolyl-tRNA synthetase [Lactobacillus crispatus ST1]
          Length = 565

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 107/265 (40%), Positives = 146/265 (55%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L     II +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEGIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDKINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGTYAANLEMAKSID 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                    +Q T       D   +
Sbjct: 241 TFKQEPEDAKQLTKVATPGCDTIEK 265



 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFADIRTANEGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAK 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++A +E     +G+ WP  +APF I ++ +K + +   +  EK+  
Sbjct: 435 PVIMGSYGIGVTRMLSAAVEQHLTERGVAWPKEIAPFAIHIVQMKMNKEDQTELAEKLEK 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           + S+   DV +DD  E+ G +FA ADL+G P+++ +G K  +D  VE+K        +MS
Sbjct: 495 KFSEK-YDVLYDDRKERAGVKFADADLVGAPIRITIGKK-AADGIVEVKRPTDNKATEMS 552

Query: 431 LEEVINYASHRF 442
           ++E+  + +   
Sbjct: 553 IDELDKFVNQEL 564


>gi|241888520|ref|ZP_04775828.1| prolyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
 gi|241864787|gb|EER69161.1| prolyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
          Length = 572

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 124/410 (30%), Positives = 188/410 (45%), Gaps = 35/410 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R+SK F+P  +E P  AE  SHKL+++ GM+ Q S G+Y++LPL  + +  +  +IREE 
Sbjct: 8   RQSKTFIPTTREVPSSAEAISHKLLIKAGMVKQVSAGVYTYLPLATRVIQKIEKVIREEH 67

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           ++ GA E+ +P LQS + W +SGR+D  G+E++R+ DR        PT EE+++    + 
Sbjct: 68  SKIGAAELLMPILQSDEYWKKSGRWDKMGEELIRVTDRKKAGYALSPTAEEIVSQTVNNM 127

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SY+ LP   YQIQ KFRDE+RPR G++R +EF+MKDAYSF  +PE  + +Y   + +Y
Sbjct: 128 VTSYKQLPMNLYQIQTKFRDEIRPRLGLLRCKEFIMKDAYSFHDSPESLRETYKDYYQAY 187

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT---- 237
             IF R  LK   ++A+SG IGG  +HEF  LA+ GE  +  ++   D+    E      
Sbjct: 188 SSIFDRFELKYRAVQADSGNIGGSYTHEFQALAEVGEDTIVYTE-ESDYSANIETAAVVE 246

Query: 238 ---------DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-----PENKRVSARGIE 283
                    +  +   L +  +Q     AA   V   +   +L      E   V  RG +
Sbjct: 247 QNYTMPTGFEKKERSLLETPDQQSIDDVAAFCGVEVNRAMKALALKADGEFYLVLMRGND 306

Query: 284 V--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
                 F   T  S    AT +  +     V       G       VI  +         
Sbjct: 307 QLNDIKFMKATGTSEVEMATEQEIEEVMGSVAGYMGPFGI--KNCKVIGDNAIKYMYNHS 364

Query: 342 DSVAPFKISLINIKAHDQVCRDACE-------KIYARLS-----KVGCDV 379
                     IN+   D       +        +   LS       G +V
Sbjct: 365 CGANKKGFHYINVNPGDYEIDAHYDLRMIEEGDLAEDLSGPVKFAKGIEV 414



 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 63/165 (38%), Positives = 97/165 (58%), Gaps = 1/165 (0%)

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                A+GIEVG +F  G  YS  M  T+  A+G+ ++  MG YGIG  R ++A+IE  +
Sbjct: 404 GPVKFAKGIEVGQVFELGKGYSEAMDVTYLDANGRANHFYMGCYGIGVTRCISAIIEQHN 463

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D KGIIWP  VAP+++ L+ +    +      +++YA+L+  G +V +DD  E+ G +F 
Sbjct: 464 DEKGIIWPKEVAPYQVHLVCVDVKKEDQVKLSDELYAQLTAAGYEVLYDDRAERAGVKFN 523

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            ADL+G PLQV+VG K   +  VE+K R T  + D  + +V+   
Sbjct: 524 DADLIGIPLQVVVGKK-AGEGIVEVKERQTLEKVDTQVVDVLAKV 567


>gi|13358098|ref|NP_078372.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170761869|ref|YP_001752619.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920446|ref|ZP_02690665.2| threonyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508529|ref|ZP_02958053.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701866|ref|ZP_02971526.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|13959578|sp|Q9PPV6|SYT_UREPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083629|sp|B1AJH5|SYT_UREP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|11271125|pir||H82878 threonyl-tRNA synthetase UU534 [imported] - Ureaplasma urealyticum
 gi|6899538|gb|AAF30947.1|AE002152_6 threonyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827446|gb|ACA32708.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902899|gb|EDT49188.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182675966|gb|EDT87871.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701170|gb|EDU19452.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 580

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 159/444 (35%), Gaps = 35/444 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  LQE   RD       L L T   +   +G+  WLP G    + V   I E + +  
Sbjct: 168 YLKDLQERKERDHRKIGKDLNLFT-FNNLAGQGLPIWLPNGTIIKNQVQKFINEVEFQFN 226

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L S DL+  SG +D Y   +      +++ ++  P      T ++ + ++SY
Sbjct: 227 FDTVITPILGSIDLYKTSGHWDHYKDNIFSPVQIDNEILVLRPMTCPHHTLVYSNELRSY 286

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +  +  R E      G  R RE +++D + F    +  +H     F      
Sbjct: 287 RSLPIRLSEHSILHRYESSGGLTGFERVREMILEDCHVFCR-FDQIEHEVINAFKMIQEA 345

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK-DFMDFPIPSENTDFDDII 243
              LG+K+  +                   D  + + +       +           D  
Sbjct: 346 QEGLGIKTFEIHLSLN--------------DPNDKEKYYDDPQMWEQSQNVLRKMLKDHN 391

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                +    A Y    D   + +   L     VS   ++    F    ++    + T+ 
Sbjct: 392 IPYKEMVGEAAFYGPKIDFQVKTV---LNRIITVSTIQLD----FLLPNRF----NLTYI 440

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               +     M    IG +     ++    +    I P  ++P ++ +I +  +  +  D
Sbjct: 441 NESNEQSVPVMIH--IGIIGTYERLLAILLEQTKGILPLWLSPIQVVIIPVNEN--LHTD 496

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRL 422
             +++  +L K       D   E++  +   A +   P Q+++G + + ++K V  +   
Sbjct: 497 YVKELNIKLRKHLIRSNVDLRNERLSKKIREAQIQKIPYQIVIGDEEIKNNKMVTYRCYG 556

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           +     +S+ + IN   ++    +
Sbjct: 557 SEKTTTVSITDFINMLENKIRLKK 580


>gi|307721910|ref|YP_003893050.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306980003|gb|ADN10038.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 602

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 63/435 (14%), Positives = 149/435 (34%), Gaps = 40/435 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD     +++ L T    +   G   WLP G +    + +++ +   + G   +  
Sbjct: 203 EAEKRDHRKIGNEMKLFT-FREEVGAGFPIWLPAGGRLRARLESLLFKAHRKRGYEPVRG 261

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +  +DLW+ SG Y +YG+ M      ++      P +      ++   + SYR+LP  
Sbjct: 262 PEMLRSDLWMTSGHYQNYGENM-YFTHIDELEFGVKPMNCVGHIKVYEDELHSYRDLPIK 320

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           +++  +  R E      G+ R REF   DA+ F    +  +     +             
Sbjct: 321 YFEYGVVHRHEASGALHGLFRVREFTQDDAHIFCRADQIEEQIIEVVDFV---------- 370

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                      I      ++ ++  T   +        +    +     D       I E
Sbjct: 371 ---------DKIMSTFEFDYKMMISTKPEKAVGDDKVWEISTQALKNAMDKNELAYEIDE 421

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+   K+ D++    +     ++    F    ++       + G +    
Sbjct: 422 GGGAFYGPKIDI---KITDAIGREWQCGTVQLD----FNLPERF----KLEYNGEENDKI 470

Query: 311 YV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +    +G+      ++   +        +       + + I    +  ++  + + 
Sbjct: 471 QPVMIHRAILGSFERFIGILTEHY------AGEFPMFVAPTQVAIVPVAETHKEYAKLLS 524

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L  +  D       + +  +   A+    P+ V++G + +++  V I+ R T  + ++
Sbjct: 525 DKLIDINADSEIYAKNDSLNKRIRTAEKTRVPMIVVIGDEEIANKTVAIRDRRTREQYNL 584

Query: 430 SLEEVINYASHRFSN 444
           S EE +     + + 
Sbjct: 585 SEEEFLKLIQTKINE 599


>gi|104774217|ref|YP_619197.1| prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|122983932|sp|Q1G9P3|SYP_LACDA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|103423298|emb|CAI98139.1| Prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 565

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 106/265 (40%), Positives = 145/265 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA   SH++MLR G I Q + G+YS+LPLG K L     II EE
Sbjct: 1   MRQSIFFMPTLKETPADAVAKSHQVMLRGGYIRQVTAGVYSYLPLGYKVLRKTEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +EM +P +  A +W ESGR   YG EM RL DR+ + M+ GPTHEE  TD+   
Sbjct: 61  MANAGVVEMIMPHMLPASMWEESGRLPKYGPEMFRLKDRHGREMLLGPTHEETFTDVVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  + E     ++    +
Sbjct: 121 SLKSYKQMPLQLYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAASQEQLDKQFDDEKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF R G++  P+ A+SG +GG  S EF   A  GE  +  +               D
Sbjct: 181 YLKIFKRTGVEVRPVIADSGTMGGKNSIEFQAPAAVGEDTIATNASGTYAANLEMAVSVD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                   ++          D  ++
Sbjct: 241 TFKQEPEELKAMEKVATPGCDSIDK 265



 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 3/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            + A   A   V NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 376 DFRADRFADLRVANEGEPDPVDHEPLKFTTSIEVGHIFKLGTYYTETMGAKFLDQNGKSQ 435

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++AV+E      G+ WP  +APF I +I +K  D++     E + A
Sbjct: 436 PVIMGSYGIGVTRLLSAVVEQHATENGVAWPKEIAPFGIHIIQMKMKDEIQSKLAEDLEA 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +      DV +DD  E+ G +F  ADL+G P+++ VG +  +D  VE+K       + ++
Sbjct: 496 KF--AKYDVLYDDRNERPGVKFNDADLVGAPIRITVG-RDAADGIVEVKRPGDDQAQKLA 552

Query: 431 LEEVINYASHRFS 443
           + ++ ++ ++   
Sbjct: 553 VADLEDFIANELD 565


>gi|227878822|ref|ZP_03996729.1| prolyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256843344|ref|ZP_05548832.1| prolyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256849837|ref|ZP_05555268.1| prolyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|262046917|ref|ZP_06019877.1| prolyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
 gi|293381211|ref|ZP_06627219.1| prolyl-tRNA synthetase [Lactobacillus crispatus 214-1]
 gi|312978246|ref|ZP_07789990.1| proline--tRNA ligase [Lactobacillus crispatus CTV-05]
 gi|227861570|gb|EEJ69182.1| prolyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256614764|gb|EEU19965.1| prolyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256713326|gb|EEU28316.1| prolyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|260572899|gb|EEX29459.1| prolyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
 gi|290922251|gb|EFD99245.1| prolyl-tRNA synthetase [Lactobacillus crispatus 214-1]
 gi|310894964|gb|EFQ44034.1| proline--tRNA ligase [Lactobacillus crispatus CTV-05]
          Length = 565

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 107/265 (40%), Positives = 146/265 (55%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L     II +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEGIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDKINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGTYAANLEMAKSID 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                    +Q T       D   +
Sbjct: 241 TFKQEPEDAKQLTKVATPGCDTIEK 265



 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFADIRTANEGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAK 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++A +E     +G+ WP  +APF I ++ +K + +   +  EK+  
Sbjct: 435 PVIMGSYGIGVTRMLSAAVEQHLTERGVAWPKEIAPFAIHIVQMKMNKEDQTELAEKLEK 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           + S+   DV +DD  E+ G +FA ADL+G P+++ +G K  +D  VE+K        +MS
Sbjct: 495 KFSEK-YDVLYDDRKERAGVKFADADLVGAPIRITIGKK-AADGIVEVKRPTDDKATEMS 552

Query: 431 LEEVINYASHRF 442
           ++E+  + +   
Sbjct: 553 IDELDKFVNQEL 564


>gi|257387444|ref|YP_003177217.1| threonyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
 gi|257169751|gb|ACV47510.1| threonyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
          Length = 640

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 143/446 (32%), Gaps = 46/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +Y     +   RD      ++ L +  I +    G+  + P G+  L+ ++  + +    
Sbjct: 230 EYLERRQKAKERDHRKIGQEMDLFS--IDETTGPGLPLYEPNGKTVLNELSEYVADLNRE 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +   +LW +SG YD+Y  +M  L D ND+     P +      IF     
Sbjct: 288 AGYDEVETPHVFRTELWKKSGHYDNYVDDMF-LLDVNDEEYGLKPMNCPGHATIFDQKSW 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  +++    +R E R    G+ R+  F + D + F    +          +  +
Sbjct: 347 SYRDLPIRYFEDGKVYRKEQRGELSGLSRTWSFTIDDGHLFVRPDQIEAE--VLSIMDII 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                       ++  + P     S E                   +          +  
Sbjct: 405 LDILDTFSLDYTVQFATRPEKSTGSDE-----------------IWEKAESQLEAVLEQE 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                + E   A Y    D   E   D+L  +       ++    F    ++      T+
Sbjct: 448 GIDYVVEEGDGAFYGPKIDFAFE---DALGRHWDGPTVQLD----FNMPDRFD----LTY 496

Query: 303 KGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            G D +DH   M    +     R    +IE  +                           
Sbjct: 497 TGEDNEDHRPVMIHRALYGSYERFFMVLIEHYNGKFPPWLAPEQVRILPV-------SDD 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D CE+I A L      V  +D    +G +  VA     P  +++G    +   + ++ 
Sbjct: 550 NIDYCEEIAAELDD--FRVEIEDRSWTVGKKIQVAHDDKVPYMMVIGDDEEAAGTISVRD 607

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R     +D+ L +   +        R
Sbjct: 608 RKEREEKDLELADFEQHLEREVEQKR 633


>gi|116514305|ref|YP_813211.1| prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|122274963|sp|Q049U9|SYP_LACDB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116093620|gb|ABJ58773.1| Prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|325126002|gb|ADY85332.1| Prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 565

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 106/265 (40%), Positives = 145/265 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA   SH++MLR G I Q + G+YS+LPLG K L     II EE
Sbjct: 1   MRQSIFFMPTLKETPADAVAKSHQVMLRGGYIRQVTAGVYSYLPLGYKVLRKTEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +EM +P +  A +W ESGR   YG EM RL DR+ + M+ GPTHEE  TD+   
Sbjct: 61  MANAGVVEMIMPHMLPASMWEESGRLPKYGPEMFRLKDRHGREMLLGPTHEETFTDVVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  + E     ++    +
Sbjct: 121 SLKSYKQMPLQLYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAASQEQLDKQFDDEKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF R G++  P+ A+SG +GG  S EF   A  GE  +  +               D
Sbjct: 181 YLKIFKRTGVEVRPVIADSGTMGGKNSIEFQAPAAVGEDTIATNASGTYAANLEMAVSVD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                   ++          D  ++
Sbjct: 241 TFKQEPEELKAMEKVATPGCDSIDK 265



 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 3/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            + A   A   V NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 376 DFKADRFADLRVANEGEPDPVDHEPLKFTTSIEVGHIFKLGTYYTETMGAKFLDQNGKSQ 435

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++AV+E      G+ WP  +APF I +I +K  D++     E + A
Sbjct: 436 PVIMGSYGIGVTRLLSAVVEQHATENGVAWPKEIAPFGIHIIQMKMKDEIQSKLAEDLEA 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +      DV +DD  E+ G +F  ADL+G P+++ VG +  +D  VE+K       + ++
Sbjct: 496 KF--AKYDVLYDDRNERPGVKFNDADLVGAPIRITVG-RDAADGIVEVKRPGDDQAQKLA 552

Query: 431 LEEVINYASHRFS 443
           + ++ ++ ++   
Sbjct: 553 VADLEDFIANELD 565


>gi|313246933|emb|CBY35782.1| unnamed protein product [Oikopleura dioica]
          Length = 800

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 149/437 (34%), Gaps = 37/437 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L T      S G   WLP G    + +   IR E  + G  E+ 
Sbjct: 373 EEAKKRDHRRIGTQQELWT--FDPVSAGSCFWLPRGAVIYNRLQDFIRSEYRKRGFKEVV 430

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +++LW  SG +  Y  +M       D      P +      +F S ++SY+ LP 
Sbjct: 431 TPNIFNSELWKTSGHWQHYEDDMFTFK-VEDDKWAMKPMNCPGHCVMFGSRLRSYKELPL 489

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F    +  R+EL     G+ R R F   DA+ F    +            +  ++   G
Sbjct: 490 RFADFGVLHRNELSGALSGLTRVRRFQQDDAHIFCAREQIEGE-ITAALDFFKFVYDTFG 548

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                    + P             +    +V    +       + NT      +   + 
Sbjct: 549 FTFELN-LSTRP-------------EKYLGEVADWDEAEGMLKNALNTFCSTNETKWELN 594

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+   K+ D+L    +++   ++    F    ++       F   + ++
Sbjct: 595 PGDGAFYGPKIDI---KILDALKRRHQLATIQLD----FQLPQRF----KLKFVRDNKEE 643

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++    A++    +  G  WP  ++P ++ ++ I           + I 
Sbjct: 644 TPVMIHRAILGSIERCVAILT---ESFGGKWPFWLSPRQVRVVPIGKS---QVPFAQSIA 697

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L   G +   D D  +    +   A L  +   ++VG K +      ++ R       
Sbjct: 698 NKLFDAGLEAEADPDCADTFNYRIRRAQLEQWNFILVVGDKELEAGTCAVRTRDAQQHGV 757

Query: 429 MSLEEVINYASHRFSNN 445
           + ++ V++       N 
Sbjct: 758 LHVDFVVDELVRLHKNR 774


>gi|23465302|ref|NP_695905.1| threonyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|227547263|ref|ZP_03977312.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|317483234|ref|ZP_07942229.1| threonyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
 gi|73919773|sp|Q8G6C2|SYT_BIFLO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|23325940|gb|AAN24541.1| threonyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|227212222|gb|EEI80118.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|316915303|gb|EFV36730.1| threonyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 677

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 59/461 (12%), Positives = 128/461 (27%), Gaps = 54/461 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEKDADGNITKPGADYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 420

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 421 DEL-TSLLTFVLNLLKDFGLTDFYLELST----------------KDPNKYVGSDEIWEE 463

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +      +            A Y       + +  D++    +VS   ++    F  
Sbjct: 464 ATNTLAEVAKESNLELVDDPCGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 516

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++       +   DG           +   R +   IE         +  +   +   
Sbjct: 517 PERF----QLEYIAKDGT------HQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAP 566

Query: 351 LINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  +     V  +    +      L         D   ++ G +   A     P  +IVG
Sbjct: 567 VQVLGV--PVADEFAPHLAGFVKSLEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVG 624

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            + ++++ V  + R       + ++               V
Sbjct: 625 EEDMNNNAVSFRFRDGSQLNGVPVDTAREQILTVIKKRVQV 665


>gi|322691278|ref|YP_004220848.1| threonyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320456134|dbj|BAJ66756.1| threonyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 677

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 59/461 (12%), Positives = 128/461 (27%), Gaps = 54/461 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEKDVDGNITKPGADYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 420

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 421 DEL-TSLLTFVLNLLKDFGLTDFYLELST----------------KDPNKYVGSDEIWEE 463

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +      +            A Y       + +  D++    +VS   ++    F  
Sbjct: 464 ATNTLAEVAKESNLELVDDPCGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 516

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++       +   DG           +   R +   IE         +  +   +   
Sbjct: 517 PERF----QLEYIAKDGT------HQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAP 566

Query: 351 LINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  +     V  +    +      L         D   ++ G +   A     P  +IVG
Sbjct: 567 VQVLGV--PVADEFAPHLAGFVKSLEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVG 624

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            + ++++ V  + R       + ++               V
Sbjct: 625 EEDMNNNAVSFRFRDGSQLNGVPVDTAREQILTVIKKRVQV 665


>gi|291277001|ref|YP_003516773.1| threonyl-tRNA synthetase [Helicobacter mustelae 12198]
 gi|290964195|emb|CBG40041.1| threonyl-tRNA synthetase [Helicobacter mustelae 12198]
          Length = 603

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 67/441 (15%), Positives = 144/441 (32%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      ++ L T    +   G+  WLP G +    +  ++ +      
Sbjct: 198 YLHQIEEAKKRDHRKLGVEMGLFT-FDEEVGAGLPIWLPNGARLRRRIEELLTKALMIRD 256

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P L  + +W  SG +D+YG+ M      ++      P +      +++S ++SY
Sbjct: 257 YEPVRGPELLKSSVWKTSGHFDNYGENM-YFTTIDEVEYGLKPMNCVGHIKVYQSSVRSY 315

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  FY+  +  R E      G++R REF   DA+ F   P   K   + +     +I
Sbjct: 316 RELPLRFYEYGIVHRHEKSGVLHGLLRVREFTQDDAHIFCR-PTQIKTEVSNIIAFTDKI 374

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G       A                  T   +        +    +      +   
Sbjct: 375 MQAFGFCYEMELA------------------TRPQKSIGQDAVWEVATQALIDALQENHI 416

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D++    +     I++              +  +  
Sbjct: 417 HYKIDEGGGAFYGPKIDI---KITDAIGRKWQCGTIQIDMNLP--------ERFALEYID 465

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            +      V +    +G+    +A++            +         + +    +    
Sbjct: 466 ENNTAQQPVMIHRAILGSFERFSAILTEHFG------GEFPFFIAPVQVVLIPITESQHQ 519

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +  ++  +G      +  E +  +   A+    P+ +++G K  +   + I+ R  
Sbjct: 520 YAQSLRKKIIALGAYAEVMNKNETLNKKIRNAEKQHVPMILVIGQKEQNSGTLAIRDRRE 579

Query: 424 GIREDMSLEEVINYASHRFSN 444
             + +M  EE ++    +   
Sbjct: 580 KSQYEMKEEEFLHMVEQKMKE 600


>gi|313124034|ref|YP_004034293.1| prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312280597|gb|ADQ61316.1| Prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 565

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 105/265 (39%), Positives = 145/265 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA   SH++MLR G I Q + G+YS+LPLG K L     II EE
Sbjct: 1   MRQSIFFMPTLKETPADAVAKSHQVMLRGGYIRQVTAGVYSYLPLGYKVLRKTEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +EM +P +  + +W ESGR   YG EM RL DR+ + M+ GPTHEE  TD+   
Sbjct: 61  MANAGVVEMIMPHMLPSSMWEESGRLPKYGPEMFRLKDRHGREMLLGPTHEETFTDVVAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  + E     ++    +
Sbjct: 121 SLKSYKQMPLHLYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAASQEQLDKQFDNEKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL+IF R G++  P+ A+SG +GG  S EF   A  GE  +  +               D
Sbjct: 181 YLKIFKRTGVEVRPVIADSGTMGGKNSIEFQAPAAVGEDTIATNASGTYAANLEMAVSVD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                   ++          D  ++
Sbjct: 241 TFKQEPEELKAMEKVATPGCDSIDK 265



 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 3/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            + A   A   V NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 376 DFKADRFADLRVANEGEPDPVDHEPLKFTTSIEVGHIFKLGTYYTETMGAKFLDQNGKSQ 435

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++AV+E      G+ WP  +APF I +I +K  D++     E + A
Sbjct: 436 PVIMGSYGIGVTRLLSAVVEQHATENGVAWPKEIAPFGIHIIQMKMKDEIQSKLAEDLEA 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +      DV +DD  E+ G +F  ADL+G P+++ VG +  +D  VE+K       + ++
Sbjct: 496 KF--AKYDVLYDDRNERPGVKFNDADLVGAPIRITVG-RDAADGIVEVKRPGDDQAQKLA 552

Query: 431 LEEVINYASHRFS 443
           + ++ ++ ++   
Sbjct: 553 VADLEDFIANELD 565


>gi|290890493|ref|ZP_06553568.1| hypothetical protein AWRIB429_0958 [Oenococcus oeni AWRIB429]
 gi|290479889|gb|EFD88538.1| hypothetical protein AWRIB429_0958 [Oenococcus oeni AWRIB429]
          Length = 570

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 107/250 (42%), Positives = 152/250 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P  +E P +A++ SH  MLR G I Q + GIY++LPL  + ++ + +IIREE
Sbjct: 1   MKQSKIFIPTEKEVPAEAQVKSHIFMLRAGFIRQVAGGIYAYLPLANRIINKIESIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R  A EM +P +  A+LW ESGR+ +YG +M +L DR+D+  I  PTHEE  T I   
Sbjct: 61  MSRIDANEMLMPEMIPAELWKESGRFYTYGPQMYQLKDRHDREFIMAPTHEETFTKIISD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ KFRDELRP+ G++R REF+MKDAYSF    +G   +Y+ +  +
Sbjct: 121 EIKSYKKLPLILYQIQQKFRDELRPKNGLLRGREFIMKDAYSFSSDQKGLDDAYDLIESA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+GL    + A+SG +GG  S EF  +A TGE  +  S             +F 
Sbjct: 181 YKRIFDRVGLDYREIIADSGSMGGKDSAEFQAIAATGEDIIAYSNSGKYAANIEMAEEFF 240

Query: 241 DIISLNSIVE 250
           +    +   +
Sbjct: 241 EKKIPDEDKK 250



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 1/175 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            + K V  +GIE+GHIF  GT Y+  M    +   GK   + MG YGIG  R+++A+ E 
Sbjct: 397 GKGKLVFTKGIEIGHIFKLGTFYTSKMGGQIQNEKGKLSDIIMGCYGIGISRLLSAIAEQ 456

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S+D KG IWP +VAPF + LI +   ++   +  ++I   L + G +V  DD  E+ G +
Sbjct: 457 SNDPKGFIWPKAVAPFNVHLITMNTKNESQVNLAKQIDKNLQEAGFEVLVDDRKERPGVK 516

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           FA +DL+G P++V+VG +      VE+K R      D+S + +I +   + +  +
Sbjct: 517 FADSDLIGIPIRVVVGRQ-ADQQIVEVKARGQESTNDVSTDNLIAFLKDKLNELK 570


>gi|193661987|ref|XP_001946406.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Acyrthosiphon pisum]
          Length = 433

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 140/426 (32%), Positives = 208/426 (48%), Gaps = 32/426 (7%)

Query: 22  SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           S KLML  G+I Q + G+Y  LPL Q++LD +  II +     GA ++S+P L  ++LW 
Sbjct: 29  SQKLMLELGIIRQSANGLYHLLPLAQRSLDKLIFIINKNMMDIGAQKISMPVLIHSNLWK 88

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           ++GR +   +++  + DR  K  +  PTHEEV+TD+F S  K+Y+ LP   YQ+  KFRD
Sbjct: 89  KTGRLNKNIEDLYLVNDRKSKEFLLSPTHEEVVTDLFSSDPKTYKQLPLMLYQVGTKFRD 148

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E+RP+ G++RS+EFLMKD YSFD     +  +YNK+  +Y +IF  +G+K I +   SG 
Sbjct: 149 EIRPKLGIIRSKEFLMKDLYSFDRDQTSATFTYNKVCQAYEKIFKHIGVKFIRVEGASGM 208

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           +GG+ SHEF   A+ G+  +   K                                    
Sbjct: 209 MGGNQSHEFHYPAEVGDDTLLQCKKC--------------------------GFGMNKEM 242

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                             + IEVGH F+ GT YS  +SAT+   DG      M SYG+G 
Sbjct: 243 SPESVQCPKCSSTDIEFTKAIEVGHTFHLGTFYSSALSATYSDTDGTMKPPYMCSYGLGV 302

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSKV-GC 377
            R++ A +E       I WP S++PF I +I  K     +    +    +Y   +++ G 
Sbjct: 303 SRIIGASVECLSTQDVIQWPRSISPFTICIIPAKEGSIEENASLNNVHSLYNHFTEIFGD 362

Query: 378 DVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV-EIKHRLTGIREDMSLEEVI 435
           D+  DD     IG +   A  LGFP  V++G K      + E+    T   E   L  +I
Sbjct: 363 DIIVDDRTHMTIGKRLIEAKKLGFPFVVVMGKKMNETPSLYELYEANTNKSEHYELSNLI 422

Query: 436 NYASHR 441
           NY   +
Sbjct: 423 NYLKQQ 428


>gi|118462301|ref|YP_882672.1| threonyl-tRNA synthetase [Mycobacterium avium 104]
 gi|254775941|ref|ZP_05217457.1| threonyl-tRNA synthetase [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|166225462|sp|A0QID4|SYT_MYCA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118163588|gb|ABK64485.1| threonyl-tRNA synthetase [Mycobacterium avium 104]
          Length = 684

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 68/452 (15%), Positives = 141/452 (31%), Gaps = 48/452 (10%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +++E  R D      +L L +    +   G+  + P G      +    R +    G 
Sbjct: 251 LRLIEEAQRRDHRKLGSELDLFS-FPDEIGSGLAVFHPRGGVVRRELEEYSRRKHIEAGY 309

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVM 114
             ++ P +  A L+  SG  D Y   M                 +  +     P +  + 
Sbjct: 310 EFVNTPHITKAQLFHTSGHLDWYADGMFPPMHLDAEYDDDGTVRKPGQDYYLKPMNCPMH 369

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T I+RS  +SYR LP   ++    +R E      G+ R+R F M D++ F    +     
Sbjct: 370 TLIYRSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTMDDSHIFCTREQLHGEL 429

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
              +    L +    GL    +   +                    +   S +  +    
Sbjct: 430 -ASLLRFVLELLGDYGLTDFYLELST----------------KDPDKFVGSDEMWEQATT 472

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           S      +            A Y       + +  D+L  + ++S   ++    F F  +
Sbjct: 473 SLADVAAESGLELVPDPGGAAFYGPKI---SVQARDALGRSWQMSTIQVD----FNFPER 525

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           + L  +A+      +   V +     G++     ++   + G    W   V    I +  
Sbjct: 526 FELEYTAS---DGTRQRPVMIHRALFGSIERFFGILTEHYAGAFPAWLAPVQAVGIPVA- 581

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
                       E + A+L   G  V  D   +++  +         P  ++ G + V+ 
Sbjct: 582 -----DEHVPYLESVAAQLKSHGVRVEVDASDDRMAKKIVHHTAQKVPFMLLAGDRDVAA 636

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             V  +         +  +  ++      ++ 
Sbjct: 637 GAVSFRFGDRTQINGVPRDSAVDAIVKWIADR 668


>gi|309782526|ref|ZP_07677250.1| threonine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918863|gb|EFP64536.1| threonine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
          Length = 580

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 125/388 (32%), Gaps = 41/388 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L    I ++S G   W P G      +   +R      G
Sbjct: 231 YLHMLEEAEKRDHRKLGRELDLF--HIDEYSPGTVFWHPKGWTLWQEIEQYMRRVYRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D Y + M  + +   +     P +      I++  IKSY
Sbjct: 289 YQEVKGPQILDKTLWEKTGHWDKYRENMF-ITESEKREYALKPMNCPGHILIYKQGIKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F +     R+E      G+MR R F   D + F  T +  +           ++
Sbjct: 348 RDLPLRFGEFGACHRNEPSGGLHGIMRVRGFTQDDGHIFC-TEDMIQAEVTAFTTLLQKV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I  +  + P     + E                   D    +          
Sbjct: 407 YKDFGFTEILYKLSTRPDKRIGTEE-----------------SWDRAEAALAEGLRASGC 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    +     L D+L    +     ++              + A F G
Sbjct: 450 EFEYLPGEGAFYGPKIEY---VLKDALGRQWQCGTIQVDPNLP--------ERLDAEFVG 498

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG  H    +    +G++     ++   + G    W           + + +      +
Sbjct: 499 EDGARHRPIMLHRAIVGSLERFIGILIEQYAGALPTW------LSPVQVAVLSITDSHAE 552

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             + +   L K G     D   E+IG +
Sbjct: 553 YAQSVAQSLQKQGFRAVVDLRNEKIGYK 580


>gi|323142407|ref|ZP_08077233.1| threonine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322413100|gb|EFY03993.1| threonine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 597

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 142/446 (31%), Gaps = 37/446 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y     +   RD       L   T  +    +G+   LP G + +  +   + + + + G
Sbjct: 180 YLEQQAEALKRDHNKLGRDLEYFTT-VDYIGQGLPILLPKGARVIQLLQRWVEDVEQKRG 238

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK---AMIYGPTHEEVMTDIFRSHI 122
            +    P +   DL+  SG +D Y   M  L D +D+        P        +F +  
Sbjct: 239 YLLTKTPLMAKRDLYRISGHWDHYLDGMFILGDPHDETKECFALRPMTCPFQYQVFLNRQ 298

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP    +    FR+E      G++R R+F + + +   L P+  +  +       
Sbjct: 299 RSYRELPMRLGETSTLFRNEDSGEMHGLIRVRQFTISEGHLI-LRPDQLEEEFKGCLDLA 357

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFD 240
                           E+  +    +  F           +  + +  D    +     D
Sbjct: 358 KYC------------LETVGMLDKCTFRFSQWNPANPNNKYEGTAEQWDHAQAAMKKILD 405

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D+     +     A Y    D+    +F    +   +    I++     FG         
Sbjct: 406 DLGVNYEVGFDEAAFYGPKLDIQFHNVF---GKEDTIVTIQIDMLLAEKFG--------M 454

Query: 301 TFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   +G+      +    +G      A +  ++ G    W        + +        
Sbjct: 455 YYVDENGEKKLPYIIHRTSLGCYERTLAYLIETYAGALPTWMAPEQVRFLPVT------D 508

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D C ++  +L   G     D   E+IG +     L   P  ++VG + + ++ V  +
Sbjct: 509 RAVDYCYELAHKLEANGYRATVDARNEKIGKKIREGQLEKIPYMLVVGDRDMENNTVSPR 568

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
           +R  G    MS E           + 
Sbjct: 569 NRTEGDMGAMSFEAFEAILKDVVDSK 594


>gi|46191233|ref|ZP_00120366.2| COG0441: Threonyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|189439311|ref|YP_001954392.1| threonyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|238692055|sp|B3DRX5|SYT_BIFLD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189427746|gb|ACD97894.1| Threonyl-tRNA synthetase [Bifidobacterium longum DJO10A]
          Length = 677

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 59/461 (12%), Positives = 128/461 (27%), Gaps = 54/461 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEKDADGNITKPGADYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 420

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 421 DEL-TSLLTFVLNLLKDFGLTDFYLELST----------------KDPNKYVGSDEIWEE 463

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +      +            A Y       + +  D++    +VS   ++    F  
Sbjct: 464 ATNTLAEVAKESNLELVDDPCGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 516

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++       +   DG           +   R +   IE         +  +   +   
Sbjct: 517 PERF----QLEYIAKDGT------HQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAP 566

Query: 351 LINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  +     V  +    +      L         D   ++ G +   A     P  +IVG
Sbjct: 567 VQVLGV--PVADEFAPHLAGFVKSLEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVG 624

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            + ++++ V  + R       + ++               V
Sbjct: 625 EEDMNNNAVSFRFRDGSQLNGVPVDTAREQILTVIKKRVQV 665


>gi|73981325|ref|XP_850160.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 2
           [Canis familiaris]
          Length = 721

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 153/460 (33%), Gaps = 58/460 (12%)

Query: 8   LPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   +E   +AE+  H+ + +       H+ S G   +LP G +  + + A IR E  R 
Sbjct: 290 LRAWEEWKGEAELRDHRRIGKAQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYTRR 349

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKAMIYGP 108
           G  E+  PTL SA LW  SG ++ Y ++M                      +   +   P
Sbjct: 350 GFSEVKTPTLFSAKLWELSGHWEHYQEDMFVLQPPGSDRLASSLSVCSTSHSTDTLALKP 409

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTP 167
            +      +F    +S+R LP       +  R E      G+ R R F   DA+ F   P
Sbjct: 410 MNCPAHCLMFAHRPRSWRELPLRLADFGVLHRAEASGSLGGLTRLRCFQQDDAHIFCA-P 468

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +  +            ++  LG         + P G                        
Sbjct: 469 DQLEEEIQGCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------LGESCL 510

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            D          ++      +     A Y    DVH   L D+L    +     ++    
Sbjct: 511 WDQAEQVLQRALEEFGEPWDLKPGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD---- 563

Query: 288 FYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           F    ++       +KG  G  +  V +    +G++  +  V+    +  G  WP  ++P
Sbjct: 564 FQLPLRFD----LQYKGQAGVLERPVLIHRAVLGSVERMLGVLA---ESYGGKWPLWLSP 616

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVI 405
           F++ +I +        +   +   RL   G     D D G  +  +   A L  +  Q +
Sbjct: 617 FQVVVIPVG---AEQEEYAREAQQRLQAAGLVCDLDADSGLTLSRRVRRAQLAHYNFQFV 673

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           VG K  S   V I+ R      +  L E +       +  
Sbjct: 674 VGQKEQSKKTVNIRTRDNRQLGERDLTEAVQRLLELQNTR 713


>gi|317010401|gb|ADU84148.1| threonyl-tRNA synthetase [Helicobacter pylori SouthAfrica7]
          Length = 612

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 151/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F    +          + +   
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSE--VSAILDFTHK 382

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             +    S  M   + P                           +    +      +   
Sbjct: 383 IMKAFDFSYEMELSTRPAKS-----------------IGDDKVWEKATNALKEALKEHHI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 NYKIDEGGGAFYGPKIDI---KITDALRRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 EHNNAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHG 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEELKKCDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEMLSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QTQYKMPLKEFLNMVESKMQE 609


>gi|224437778|ref|ZP_03658725.1| prolyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313144224|ref|ZP_07806417.1| prolyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313129255|gb|EFR46872.1| prolyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
          Length = 593

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 109/228 (47%), Positives = 150/228 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F+  L+E P+DA + SH+ ++R G I Q   GIY++LPLG+K LD V  II+EE
Sbjct: 1   MRFSQLFVNTLKEAPKDALLKSHQYLVRGGFIQQVGSGIYNFLPLGKKLLDKVRFIIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + T A E+ +  +  ADLW ESGRY+ YG+E+LRL DR +   + GPTHEEV+T I ++
Sbjct: 61  MDITNAQEILMGFVTPADLWRESGRYEKYGRELLRLVDRKENEFVLGPTHEEVVTFIAKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQI  KFRDE+RPRFG+MR REF+MKD YSF  + E     ++ M  +
Sbjct: 121 GVKSYKQLPVHLYQIHTKFRDEVRPRFGLMRGREFIMKDGYSFHSSFEDLDREFDVMEQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
           Y +I  R+G+    + A+SG IGG  S EF+VLA  GE  +   K+  
Sbjct: 181 YKKILERIGVDFKIVEADSGAIGGSGSKEFMVLAPCGEDTIVVCKNCE 228



 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 91/185 (49%), Gaps = 5/185 (2%)

Query: 260 SDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   +  D  P+   +    +GIEVGHIF  GTKYS  M+A F   DGK   + MG Y
Sbjct: 405 ADLAQTQEGDLCPKCNGELYYTKGIEVGHIFKLGTKYSHAMNAQFLDKDGKAQDLIMGCY 464

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G G  R++ A++E   D  G +W   V  F +++I     D    +   KIY      G 
Sbjct: 465 GFGVSRILPAILEQKSDELGCVWGKEVKVFDLAIIISNVKDIAQSEFATKIYEECKARGI 524

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD  E+ G +    +LLGF   +IVG K +++ ++E+  R    + ++  +E  N 
Sbjct: 525 DVLLDDRDERFGVKMKDFELLGFSFALIVG-KGLNEGRLELIKREGLKKFELQCDE--NI 581

Query: 438 ASHRF 442
             +  
Sbjct: 582 LENLL 586


>gi|217034632|ref|ZP_03440039.1| hypothetical protein HP9810_881g25 [Helicobacter pylori 98-10]
 gi|216942927|gb|EEC22414.1| hypothetical protein HP9810_881g25 [Helicobacter pylori 98-10]
          Length = 612

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 152/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F                + L  
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCS-----FEQIQSEVSAILDF 379

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                         +  I       + +   T   +        +    +      +   
Sbjct: 380 --------------THKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATSALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 EHNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I++R  
Sbjct: 529 FALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRNREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|254423005|ref|ZP_05036723.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7335]
 gi|196190494|gb|EDX85458.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7335]
          Length = 618

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 61/443 (13%), Positives = 138/443 (31%), Gaps = 35/443 (7%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +    +E  R D      +L L      +   G+  W P G      +   ++ EQ   G
Sbjct: 204 YKRRKEEAKRRDHRKLGKELGLFI-FSDEVGPGLPLWTPKGTVLRSTLEDYLKGEQVARG 262

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKS 124
            + +  P +   DL+  SG +  Y +++  +   ++    +    +      I++S ++S
Sbjct: 263 YLPVVTPHVGRVDLFKTSGHWQKYSEDLFPMMGESEDEGFVLKAMNCPFHVQIYKSQLRS 322

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           Y+ LP    +    +R E     G +       +D     +TP      + K+       
Sbjct: 323 YKELPIRLAEFGTVYRYEQSGELGGLTRVRGFTQDDAHLFVTPNQLNDEFLKVVDLIQAT 382

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                        +   +               +++   S +  +    +     + +  
Sbjct: 383 ------------LKVLQMDQSFRARLSFRDPKNKSKYIGSDEAWEKAQSAIRQAVETMGM 430

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +       A Y    D     + D+L    ++    ++               +  +  
Sbjct: 431 DHFEGIGEAAFYGPKLDFI---VRDALDREWQLGTVQVDYNLP--------ERFNLEYVA 479

Query: 305 ADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            DG      M          R++  +IE       +                    +   
Sbjct: 480 EDGSRQRPIMIHRAPFGSLERLIGILIEQYAGDFPLWLAPEQVRLLPVA-------ESHW 532

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  E+    + K+G  V  D  GE++G     ++    P+  ++G + V+D+ + I+ R 
Sbjct: 533 EYAERAAIDMRKLGARVEVDKSGERLGKMIRNSEKAKIPVMSVIGDQEVTDNTLSIRTRK 592

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
            G    ++L EV++         
Sbjct: 593 EGDLGAIALPEVLSRIKAALETR 615


>gi|119485182|ref|ZP_01619567.1| threonyl-tRNA synthetase [Lyngbya sp. PCC 8106]
 gi|119457410|gb|EAW38535.1| threonyl-tRNA synthetase [Lyngbya sp. PCC 8106]
          Length = 608

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 68/441 (15%), Positives = 146/441 (33%), Gaps = 39/441 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 196 EEALKRDHRKLGKELGLFI-FADVVGPGLPLWTPKGTVLRSTLEDFLKKEQLKRGYLPVV 254

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  +   +++A       +  P +      I++S ++S
Sbjct: 255 TPHIGRIDLFKASGHWQQYREDMFPMMAEDEEAAKLEQGFVLKPMNCPFHIQIYKSELRS 314

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    +    +R E     G +        D     +TPE  +  +  +    L +
Sbjct: 315 YRELPIRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPEQLESEFLNVVDLILSV 374

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F +L L +   R                  D    +   S    +    +     + +  
Sbjct: 375 FGKLKLSNFKARLS--------------FRDPESDKYIGSDQVWNKAESAITKAVETLEM 420

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            + +     A Y    D       D L    ++    ++                  +  
Sbjct: 421 DHFLGIGEAAFYGPKLDFI---FQDVLDREWQLGTVQVDYNLP--------ERFDLEYVA 469

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +     G++  +  ++   + G   +W           + + A       
Sbjct: 470 EDGTRQRPVMIHRAPFGSLERLIGILIEQYAGDFPLW------LAPIQVRLLAVSDEFLT 523

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  ++  +      D   E++G Q   A+    P+  I+G+K V  + + I+ R +
Sbjct: 524 YTQEVVEKMRSLDIRAEVDRSRERLGKQIRNAEKEKIPVMAIIGAKEVEANSLSIRTRAS 583

Query: 424 GIREDMSLEEVINYASHRFSN 444
           G    + ++EV     +  +N
Sbjct: 584 GELGTLPVDEVCQRIQNAIAN 604


>gi|296170866|ref|ZP_06852424.1| threonine--tRNA ligase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894491|gb|EFG74233.1| threonine--tRNA ligase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 677

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 68/453 (15%), Positives = 139/453 (30%), Gaps = 50/453 (11%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E  R D      +L L +    +   G+  + P G      +    R +    G 
Sbjct: 244 LELLEEAQRRDHRKLGTELDLFS-FPDEIGSGLAVFHPKGGVVRRELEEYSRRKHIEAGY 302

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVM 114
             ++ P +  A L+  SG  D Y + M                 +  +     P +  + 
Sbjct: 303 EFVNTPHITKAQLFHTSGHLDWYAEGMFPPMHLDAEIGDDGTVRKPGQDYYLKPMNCPMH 362

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T IFRS  +SYR LP   ++    +R E      G+ R+R F M D++ F    +     
Sbjct: 363 TLIFRSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTMDDSHIFCTREQLHGEL 422

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
              +    L +    GL+   +   +                    +   + +  +    
Sbjct: 423 -ASLLRFVLELLGDYGLEDFYLELST----------------KDPEKFVGTDEMWEQATN 465

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           S      +            A Y       + +  D+L  + ++S   ++    F F  +
Sbjct: 466 SLAEVAAESGLELVPDPGGAAFYGPKI---SVQARDALGRSWQMSTIQVD----FNFPER 518

Query: 294 YSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           +       +   DG       +     G++     ++   + G    W   V    I + 
Sbjct: 519 F----ELEYTAPDGTRQRPVMIHRALFGSIERFFGILTEHYAGAFPAWLAPVQVVGIPVA 574

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                        E + A+L   G  V  D   +++  +         P  ++ G + V 
Sbjct: 575 ------DEHVPYLESVAAQLKSHGVRVEVDASDDRMAKKIVHHTGQKVPFMLLAGDRDVQ 628

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              V  +         +  +  ++      ++ 
Sbjct: 629 AKAVSFRFGDRTQINGVPRDSAVDAIVKWIADR 661


>gi|87123890|ref|ZP_01079740.1| tRNA synthetases, class-II (G, H, P and S):Prolyl-tRNA synthetase
           [Synechococcus sp. RS9917]
 gi|86168459|gb|EAQ69716.1| tRNA synthetases, class-II (G, H, P and S):Prolyl-tRNA synthetase
           [Synechococcus sp. RS9917]
          Length = 594

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 113/240 (47%), Positives = 149/240 (62%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEIASH+L+LR G I +   GIY++LPL  + L  +NAI+REE
Sbjct: 1   MRVSRLMLVTLRDVPADAEIASHQLLLRGGFIRRVGSGIYAYLPLMWRVLQRINAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA+E  +P LQ A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MNALGALETLLPQLQPAELWERSGRWQGYTAGEGIMFHLDDRQGRQLGLGPTHEEVITSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       +  Y  M
Sbjct: 121 AGELLRSYRQLPVTLYQIQSKFRDEIRPRFGLMRGREFIMKDAYSFHADASDLQACYGAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y RIF R GL+++ + A+SG IGG  S EF+V A+ GE  +  S+    +    E  
Sbjct: 181 DGAYRRIFDRCGLQTVAVEADSGAIGGAASQEFMVTAEAGEDLILMSESGS-YAANLEKA 239



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/187 (35%), Positives = 100/187 (53%), Gaps = 4/187 (2%)

Query: 260 SDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            D+ N +  D     PE   ++ RGIEVGHIF  G KYS  M A+F  ADG    + MG 
Sbjct: 407 VDLRNAQAGDRCQSDPEQTLMARRGIEVGHIFQLGRKYSQAMDASFTNADGGQEALWMGC 466

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+  A +E  HD  GI WP ++APF++ ++     +   R   E +YARL   G
Sbjct: 467 YGIGVSRLAQAAVEQHHDDAGICWPLAIAPFQVIVVVANLQEATQRSLGEDLYARLMAQG 526

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            D   DD  E+ G +F  ADL+G P +++VG +  +D +VE+  R T   + ++++  + 
Sbjct: 527 VDALLDDRQERAGVKFKDADLIGIPWRIVVG-RAAADGQVELVERATRQADVLTVDAALE 585

Query: 437 YASHRFS 443
                 +
Sbjct: 586 RVLAAVA 592


>gi|332220153|ref|XP_003259222.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial isoform 1
           [Nomascus leucogenys]
          Length = 718

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 83/456 (18%), Positives = 138/456 (30%), Gaps = 55/456 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
             +   RD      +  L     H+ S G   +LP G +  + + A IR E  R G  E+
Sbjct: 294 REEAELRDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFSEV 351

Query: 70  SVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKAMIYGPTHEEV 113
             PTL S  LW +SG ++ Y ++M                          +   P +   
Sbjct: 352 KTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPA 411

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              +F    +S+R LP          R E      G+ R R F   DA+ F  T +    
Sbjct: 412 HCLMFAHRPRSWRELPLRLADFGALHRAEASGSLRGLTRLRCFQQDDAHIFCTTDQLEAE 471

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                      ++  LG         + P G                         D   
Sbjct: 472 -IQSCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------LGDPCLWDQAE 512

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                   +      +     A Y    DVH   L D+L    +     ++    F    
Sbjct: 513 QVLKQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPL 565

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           ++       +KG  G      +    +        ++    +  G  WP  ++PF++ +I
Sbjct: 566 RFD----LQYKGQAGALERPVLIHRAVLGSMER--LLGVLAESCGGKWPLWLSPFQVVVI 619

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +    +   +   +    L   G     D D G  +  +   A L  +  Q +VG K  
Sbjct: 620 PVGTEQE---EYAREAQQSLQAAGLVSDLDADSGLTLSRRIRQAQLAHYNFQFVVGQKEQ 676

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           S   V I+ R      +  L E +       +   P
Sbjct: 677 SKRTVNIRTRDNRRLGEWDLPEAVQRLVELQNTRVP 712


>gi|296194829|ref|XP_002745122.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic [Callithrix
           jacchus]
          Length = 723

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 149/447 (33%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIDFIRSE 363

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       ++     P +      +F  
Sbjct: 364 YRKRGFQEVVTPNIYNSRLWMTSGHWQHYSENMFSFEVEKEQ-FALKPMNCPGHCLMFDH 422

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 423 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 481

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E    A+                        
Sbjct: 482 FLRMVYSVFGFSFKLN-LSTRPEKFLGDIEVWNQAEK-----------------QLENSL 523

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    +++L   
Sbjct: 524 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRFNLTFV 576

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ ++ +     
Sbjct: 577 SH--DGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGPS-- 629

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C +  +K+  +          D D G  +  +   A L  +   ++VG K      V I
Sbjct: 630 -CDEYAQKVRQQFHAAKFMADVDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNI 688

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   +  + ++ E +        + 
Sbjct: 689 RTRDNKVHGERTVSETVERLQQLKESR 715


>gi|149195433|ref|ZP_01872516.1| threonyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
 gi|149134438|gb|EDM22931.1| threonyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
          Length = 613

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 72/444 (16%), Positives = 137/444 (30%), Gaps = 46/444 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      +L L      + + G+  WLP G     N+  ++     +  
Sbjct: 202 YLKRLEEALKRDHRKLGKELELWL-FDEEVAPGMPIWLPRGAMLRANLEKLLFSAHIQRE 260

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------AMIYGPTHEEVMTDIFR 119
              +  P +  +++W  SG Y +Y + M      +D            P +      IF 
Sbjct: 261 YEPVRGPEILRSEMWKISGHYYNYKENMYFTEIAHDDNQKQAEEYGIKPMNCLSHVKIFG 320

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             ++SY+ LP  F++     R E      G++R REF   DA+ F    +  +     + 
Sbjct: 321 HKVRSYKELPLRFFEFGTVHRHEKSGVLHGLLRVREFTQDDAHIFCRPEQIEEEVIK-VL 379

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                I  R G K       + P     S E                   +    +    
Sbjct: 380 DFVDSIMQRFGFKYEM-EISTRPEKSIGSDE-----------------IWEKATEALKNA 421

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            + +     I E   A Y    D+   K+ D++    +     ++    F    ++    
Sbjct: 422 LNKLNREYGIDEGGGAFYGPKIDI---KITDAIGRKWQCGTIQVD----FNLPERFD--- 471

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             ++   + +      +    IG+     A++            +               
Sbjct: 472 -ISYIDENNERKRPVMIHRAIIGSFERFIAILTEH------YAGEFPTFIAPIKAIFVPI 524

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   D  ++I   L K           + +  +   A+       VI+G + V D  V 
Sbjct: 525 SENHIDYAKEIQKELLKDDLKTEIYASNDSLNKRIRNAEKQKVAYVVIIGDEEVKDGTVA 584

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           I+ R    +  M   E +      
Sbjct: 585 IRDRRKRTQYKMKKGEFVEMIKKL 608


>gi|206889362|ref|YP_002248875.1| prolyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|226701352|sp|B5YKW0|SYP_THEYD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|206741300|gb|ACI20357.1| prolyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 571

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 109/256 (42%), Positives = 153/256 (59%), Gaps = 1/256 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+P ++E P      SH LML+ G + Q + G++ +LPLG + L+ +N I++EE
Sbjct: 1   MRYSKLFIPTMREIPSGINAISHILMLKAGYVRQLAAGLFIFLPLGWRVLNKINMILKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA E+S+P L  A++W E+GR+ +  +EM RL DR  + M  G THEE+MT I   
Sbjct: 61  MERIGAQEISMPILHPAEIWQETGRWYTIKEEMFRLKDRTGRDMCLGMTHEEIMTWIASK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSYR LP  +YQIQ K RDE RPR GV+R+REF+MKD+YSFD+  EG   SYN    +
Sbjct: 121 EIKSYRQLPQIWYQIQTKLRDEARPRGGVLRTREFIMKDSYSFDIDWEGLDKSYNLHAEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDF 239
           Y RIF + GLK   + ++ G +G   SHEF+     GE ++  C        I    ++ 
Sbjct: 181 YHRIFTKCGLKYYQVESDPGIMGDMESHEFMAPTPAGEDEIVLCDSCGYSANIEVAKSEL 240

Query: 240 DDIISLNSIVEQWTAP 255
             + SLN   ++   P
Sbjct: 241 PTLPSLNFEYKEIYTP 256



 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 116/228 (50%), Gaps = 12/228 (5%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWT---APYAATSDVHNEKLFDSLPENK--RVSA 279
           K   DF I  E +        N  ++         A  +D+   K  D  P+        
Sbjct: 338 KKIADFSIQKEISYISGANKKNYHLQGIIPGIHFDAQWADIRRVKEEDRCPKCGNSLKIE 397

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + IEVG+IF  GTKY+ P+ A F   DGK+  + MGSYGIG  RV AA IE +HD  GII
Sbjct: 398 KAIEVGNIFKLGTKYTEPLHAYFLDKDGKEKPIIMGSYGIGPARVAAAAIEQNHDSDGII 457

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------LSKVGCDVFWDDMGEQIGSQF 392
           WP S++PF I +I +   D+      E++Y +        +    +V  DD  E+ G +F
Sbjct: 458 WPKSISPFDIEIIPLNMDDEKTVSIAEELYEKVTEIYNSFADRHMEVLIDDRDERPGVKF 517

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             ADL+G P+Q+++G K + ++KVEIK R T   + +S+ + +    +
Sbjct: 518 KDADLIGIPIQIVIGKKGLKENKVEIKKRRTKETKKVSVNKAVVEIVN 565


>gi|145230123|ref|XP_001389370.1| threonyl-tRNA synthetase, cytoplasmic [Aspergillus niger CBS
           513.88]
 gi|134055485|emb|CAK44000.1| unnamed protein product [Aspergillus niger]
          Length = 718

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 76/464 (16%), Positives = 144/464 (31%), Gaps = 51/464 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ +  L  L+E   R+      +  L      + S G    LP G K  + + +++R E
Sbjct: 282 KQMQEHLKFLEEAEKRNHVKLGKEQELF--FFDEVSPGCPFLLPNGTKIFNALQSLLRSE 339

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W  SG +  Y  +M +L D   +     P +      +F  
Sbjct: 340 YRKRGYQEVQTPNMYDVGIWKTSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHFVLFGH 398

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    + +      +F 
Sbjct: 399 RERSYRELPLRIADFGVLHRNEASGALSGLTRVRKFQQDDTHIFCTQDQITSE-IEGLFD 457

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G     ++  + P                  +     +  ++         
Sbjct: 458 FLQAIYGLFGFTF-KLKLSTRP-----------------EKYLGELETWNYAEEQLKAAM 499

Query: 240 DDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSL 296
                 +  + E   A Y    D+    + D+L    + +   ++      F      + 
Sbjct: 500 TKFKGNDWTIDEGDGAFYGPKIDI---TIADALKREFQCATIQLDYQAPINFKLEYMSNE 556

Query: 297 PMSATFKGA---------DGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAP 346
             SA               G+   V +    IG+  R +  +IE                
Sbjct: 557 KASADAAKEGEAKPNEPGPGRARPVVIHRAIIGSFERFLGILIEHFGGKWPFWISPRQIL 616

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
               +  +        D  E++   L     +V  D  G  +  +     L  +    +V
Sbjct: 617 IVPVMPAVN-------DYVEELQTILRGDKLNVDIDLSGNTMQKKIRTGQLQQYNFIFVV 669

Query: 407 GSKFVSDSKVEIKHRL---TGIREDM-SLEEVINYASHRFSNNR 446
           G+       V I++R    T  +  M  L+EV           R
Sbjct: 670 GASEKESRTVNIRNRDDPATQKQGVMIPLDEVREKLRSLRKERR 713


>gi|330932301|ref|XP_003303723.1| hypothetical protein PTT_16056 [Pyrenophora teres f. teres 0-1]
 gi|311320083|gb|EFQ88182.1| hypothetical protein PTT_16056 [Pyrenophora teres f. teres 0-1]
          Length = 776

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 82/479 (17%), Positives = 149/479 (31%), Gaps = 64/479 (13%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  L  L+E   RD      +  L     H+ S G   +LP GQ   + + A +REE   
Sbjct: 320 QAHLKFLEEAAKRDHRKIGKEQELF--FFHEFSPGSCFFLPHGQIIYNTLQAFLREEYWN 377

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW  SG +  Y  +M    D   +     P +      IF+   +
Sbjct: 378 RGYQEVGSPNMYNSALWKISGHWQHYADDMFTF-DVEKEKWALKPMNCPGHCLIFKHRER 436

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP       +  R+E      G+ R R F   D + F    + ++   + +F    
Sbjct: 437 SYRELPIRMADFGILHRNEASGALTGLTRVRRFQQDDTHVFCTQDQITEE-ISALFDFLR 495

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G      +  + P G     E     D  E ++            + N      
Sbjct: 496 AVYGKFGFTFKM-KLSTRPEGFLGDIE---TWDKAEGKL----------TEALNQFTAAG 541

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSA 300
            S   +     A Y    D+    + D+L    + +   ++      F      S  +  
Sbjct: 542 GSAWELNPGDGAFYGPKIDI---TISDALKREFQCATIQLDFQLPNQFELEYMTSEVIPV 598

Query: 301 TFKG-----------------------------ADGKDHYVQMGSYGIGAMRVVAAVIES 331
             K                                G    V +     G+     A++  
Sbjct: 599 KNKDQLQEGGHIEQKKEKLEGADVTIPKKIKEPQPGYARPVMIHRAIYGSFERFIAILTE 658

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
              G+   W        I ++          D  +++ A L K       D  G  +  +
Sbjct: 659 HFAGRWPFWLSPRQVMIIPVMP------GANDYVKEVQAELRKHRLHADIDISGNTMQKK 712

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
              A L  +   ++VG++      V  ++R     +     + L+E +          R
Sbjct: 713 IRTAQLALYNFIMVVGAEEQQARAVNWRNRDDQETQQRGVIVPLDEAVKKLVELRDERR 771


>gi|332251674|ref|XP_003274971.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic isoform 1
           [Nomascus leucogenys]
          Length = 723

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 148/449 (32%), Gaps = 44/449 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +  + +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 306 KMLKEWEKLQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 363

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y   M       +      P +      +F  
Sbjct: 364 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSDNMFSFEVEKEL-FALKPMNCPGHCLMFDH 422

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 423 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 481

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 482 FLRTVYSIFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 523

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 524 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 572

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 573 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 628

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K      V
Sbjct: 629 --TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTV 686

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I+ R   +  + ++ E I        + 
Sbjct: 687 NIRTRDNKVHGERTISETIERLQQLKQSR 715


>gi|116072890|ref|ZP_01470155.1| prolyl-tRNA synthetase [Synechococcus sp. BL107]
 gi|116064416|gb|EAU70177.1| prolyl-tRNA synthetase [Synechococcus sp. BL107]
          Length = 593

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 109/240 (45%), Positives = 148/240 (61%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +AEIASH+L+LR G I +   GIY +LPL  K +  + AI+R+E
Sbjct: 1   MRVSRLLLVTLRDVPAEAEIASHQLLLRGGYIRRVGSGIYGYLPLMWKVIQRITAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N+ GA E  +P L  A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  LNKAGAQETLLPQLHPAELWQRSGRWQGYTAGEGIMFHLEDRQGRELGLGPTHEEVVTSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SY+ LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSF  +    +++Y  M
Sbjct: 121 AGDLLQSYKQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFHASEADLRNTYLDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y RIF R GL ++P+ A+SG IGG  S EF+V AD GE  +  S D   +    E  
Sbjct: 181 DQAYRRIFERCGLAAVPVDADSGAIGGAASQEFMVTADAGEDLILLSDDGT-YAANQEKA 239



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 61/172 (35%), Positives = 87/172 (50%), Gaps = 1/172 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           PE   +  RGIEVGHIF  G KYS  M + F    GK  +  MG YGIG  R+  A +E 
Sbjct: 422 PEAHLIEKRGIEVGHIFQLGRKYSEAMDSRFTNEAGKTEHFWMGCYGIGISRLAQAAVEQ 481

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            HD  GI WP ++AP++  ++     DQ   +  E +Y +L   G D  +DD  E+ G +
Sbjct: 482 HHDDAGICWPPAIAPYEAIVVVANMQDQTQAELGESLYEQLLAAGVDALFDDRKERAGVK 541

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F  ADL+G P +V+VG +   D  VE+  R     + +   + +N       
Sbjct: 542 FKDADLIGIPWRVVVG-RDAGDGVVELVERANRGVQKLPHADALNELLSTLR 592


>gi|81428868|ref|YP_395868.1| prolyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
 gi|114152205|sp|Q38W72|SYP_LACSS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78610510|emb|CAI55561.1| Prolyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
          Length = 569

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 104/235 (44%), Positives = 151/235 (64%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P  AE  SH++MLR G IHQ S G+YS+LPL  + L+N+ AII++E
Sbjct: 1   MKQSKLFIPTLKEVPNSAEAKSHRMMLRAGYIHQVSAGVYSYLPLAYRVLENIQAIIKDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++  A++M +P +  A+LW ESGRY +YG  + +  DR+ +  I GPTHEE   D+ R+
Sbjct: 61  MSKIDAVQMQMPGILPAELWEESGRYATYGPNLFKFKDRHSRDFILGPTHEETFADLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ LP T YQIQ K+RDE RPR+G++R REF+M+DAYSF         ++ +M  +
Sbjct: 121 NIKSYKKLPLTLYQIQTKYRDEDRPRYGLLRGREFIMQDAYSFSANEADLDTTFQQMRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL    +  ++G +GG  S EF  +A+ GE  +  S    D+    E
Sbjct: 181 YTNIFERCGLDFRAIVGDAGAMGGKDSMEFSAIAEIGEDTIVYSDQ-SDYAANLE 234



 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/196 (32%), Positives = 103/196 (52%), Gaps = 1/196 (0%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A      E       E K    +GIE+GHIF  GT+Y+    ATF   +G+  
Sbjct: 375 DFNVADYADLRFVQEGETAPDGEGKLQFTKGIEIGHIFKLGTRYTEQFGATFLDENGRAK 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MGSYGIG  R+++A+ E   D  G++WP ++AP+ + ++ +   D    +  E+I  
Sbjct: 435 PIIMGSYGIGVSRLLSAITEQQADENGLVWPSAIAPYDLHVVPVNVKDDAQVELAEQIEG 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L + G  V  DD  E+ G +FA +DL+G P+++ VG K   +  VE+K R TG   ++ 
Sbjct: 495 LLEEAGYSVLVDDRKERAGVKFADSDLIGLPIRITVGKKAAEE-IVEVKLRKTGETLEVK 553

Query: 431 LEEVINYASHRFSNNR 446
            +E+IN  S   ++ +
Sbjct: 554 KDELINSLSILLASEK 569


>gi|115524346|ref|YP_781257.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
 gi|115518293|gb|ABJ06277.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Rhodopseudomonas palustris BisA53]
          Length = 679

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 141/429 (32%), Gaps = 39/429 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W   G      + A +R       
Sbjct: 257 YLKQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHAKGWTIFQALIAYMRRRL-AGD 313

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG +D Y + M       D     +     P +      I++ 
Sbjct: 314 YDEVNAPQILDKVLWETSGHWDWYRENMFAAQSAGDEAEDKRWFALKPMNCPGHIQIYKH 373

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F  T         K+  
Sbjct: 374 GLKSYRDLPLRMAEFGIVHRYEPSGAMHGLMRVRGFTQDDAHVFC-TELQLAEECLKINE 432

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L  +   G   I ++  + P     + E    A+     V            +E    
Sbjct: 433 LILSTYSDFGFGDIVVKLSTRPDKRVGTDESWDHAERVMATVL-----------AEIEAA 481

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                  +I     A Y    +     L D++  + +     ++      FG        
Sbjct: 482 SGGRIKTAINPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVDFNLPERFG-------- 530

Query: 300 ATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +  ADG K   + +     G+M     ++    +     +P  ++P ++ +  I +  
Sbjct: 531 AFYIDADGAKKTPIMVHRAICGSMERFTGILI---EHFAGHFPLWLSPVQVMVTTITSEG 587

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  + + A   K G  V  D   E+I  +     L   P  ++VG K      V +
Sbjct: 588 D---DYAKVVAAAARKAGLRVEIDLRNEKINYKVREHSLAKIPAMLVVGKKEAETHSVSV 644

Query: 419 KHRLTGIRE 427
           +   +  + 
Sbjct: 645 RRLGSDGQT 653


>gi|171910788|ref|ZP_02926258.1| threonyl-tRNA synthetase [Verrucomicrobium spinosum DSM 4136]
          Length = 652

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/497 (14%), Positives = 136/497 (27%), Gaps = 86/497 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +K+   + +   RD      +L L   +  +  +G+  WLP G      +   I EE  
Sbjct: 188 LAKHLEQLEEAKKRDHRKLGRELQLFA-IDEKVGQGLILWLPKGAVIRQELQNFIGEELR 246

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-------------------------- 96
           + G  ++  P +   +L+  SG +  Y +                               
Sbjct: 247 KQGYQQVFTPHIGKLELYKTSGHFPYYKESQFSPVVENDELAKAADCGCSCAEVMARLEG 306

Query: 97  -------------------ADRNDKA------MIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
                              ADR           +  P +      I+    KSYR+LP  
Sbjct: 307 VSKKLREEINSRTGQDTITADRVMPEEDLMDGFLLKPMNCPHHIRIYAQSPKSYRDLPVR 366

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
             +    +R E     G +       +D      T +  +            +   LG+ 
Sbjct: 367 LAEFGTVYRWEQSGELGGLTRVRGFTQDDAHLFCTEDQVEQEIMGCLSLVKTVLTTLGMS 426

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +R              + L D    +   + +  D    S       +    +    
Sbjct: 427 DYRVR--------------VGLRDPDSNKYTGTAESWDKAEASCRKAASTLGVPFTEEPG 472

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    D     + D +    ++    ++  +   F          T+ GAD   H 
Sbjct: 473 EAAFYGPKIDF---VVKDVIGREWQLGTVQVDYNNPVRFD--------LTYIGADNAAHR 521

Query: 312 VQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             M          R    +IE       +                    +       ++ 
Sbjct: 522 PVMIHRAPFGSMERFTGVLIEHFAGHFPVWLAPEQVRVLTV-------SEKSDAFANEVL 574

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L   G  V  D   ++IG++   A +   P  +++G K  +   V ++H   G     
Sbjct: 575 NELKAKGVRVVLDQSSDKIGAKIRNAQIDKIPYMLVIGEKEANSGAVAVRHSKKGDLGVK 634

Query: 430 SLEEVINYASHRFSNNR 446
           +L E +       +  +
Sbjct: 635 ALGEFVTGLQEEIAERK 651


>gi|116075299|ref|ZP_01472559.1| prolyl-tRNA synthetase [Synechococcus sp. RS9916]
 gi|116067496|gb|EAU73250.1| prolyl-tRNA synthetase [Synechococcus sp. RS9916]
          Length = 600

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 111/240 (46%), Positives = 153/240 (63%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEIASH+L+LR G I +   GIY++LPL  + L  ++AI+++E
Sbjct: 1   MRVSRLMLVTLRDVPADAEIASHQLLLRGGYIRRVGSGIYAYLPLMWRVLRKISAIVQQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA+E  +P LQ A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MDATGALETLLPQLQPAELWERSGRWQGYTAGEGIMFHLEDRQGRQVGLGPTHEEVVTSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    +     Y +M
Sbjct: 121 AGELLRSYRQLPVTVYQIQNKFRDEIRPRFGLMRGREFIMKDAYSFHADEQDLGRCYGEM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            ++Y RIF R GL+++ + A+SG IGG  S EF+V A+ GE  +  S+D   +    E  
Sbjct: 181 DLAYRRIFERCGLQAVAVEADSGAIGGAASQEFMVTAEAGEDLILTSEDGS-YAANLEKA 239



 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/184 (36%), Positives = 96/184 (52%), Gaps = 4/184 (2%)

Query: 260 SDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            D+ N +  D     P+   V+ RGIEVGHIF  G KYS  M ATF  A+G      MG 
Sbjct: 407 IDLRNAQAGDRCLQSPDQTLVARRGIEVGHIFQLGRKYSQAMDATFTTAEGGQDAFWMGC 466

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+  A +E  HD  GI WP ++APF++ ++     D       E++Y+ L   G
Sbjct: 467 YGIGVSRLAQAAVEQHHDKAGICWPLAIAPFQVVIVVANMQDDTQLQLGEQLYSTLQASG 526

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD  E+ G +F  ADL+G P +++VG +  ++ +VE+  R T   + +   E I 
Sbjct: 527 IDVLLDDRSERAGVKFKDADLIGIPWRLVVG-RDAANGQVELVERATRDTQVLPHAEAIT 585

Query: 437 YASH 440
               
Sbjct: 586 ALRQ 589


>gi|38570111|ref|NP_689547.2| probable threonyl-tRNA synthetase 2, cytoplasmic [Homo sapiens]
 gi|189083596|sp|A2RTX5|SYTC2_HUMAN RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           AltName: Full=Threonyl-tRNA synthetase-like protein 2
 gi|119622721|gb|EAX02316.1| threonyl-tRNA synthetase-like 2 [Homo sapiens]
 gi|124376838|gb|AAI32672.1| Threonyl-tRNA synthetase-like 2 [Homo sapiens]
 gi|187953219|gb|AAI36316.1| Threonyl-tRNA synthetase-like 2 [Homo sapiens]
          Length = 802

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 150/447 (33%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 385 KMMRDWEKFQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLTDFIREE 442

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y + M       D      P +      +F  
Sbjct: 443 YHKRDFTEVLSPNMYNSKLWEASGHWQHYSENMFTFEIEKDT-FALKPMNCPGHCLMFAH 501

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 502 RPRSWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLQ 560

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  +          
Sbjct: 561 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEIEMWNEAEKQLQNSL 602

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 603 MDFGEPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 655

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 656 SK--DGDDKKRPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP--- 707

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C     ++ +   + G     D D    +  +   A L  +   ++VG K   D+ V +
Sbjct: 708 TCEKYALQVSSEFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNV 767

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   I  ++ +   I+   +     
Sbjct: 768 RTRDNKIHGEILVTSAIDKLKNLRKTR 794


>gi|270284377|ref|ZP_05966008.2| proline--tRNA ligase [Bifidobacterium gallicum DSM 20093]
 gi|270276752|gb|EFA22606.1| proline--tRNA ligase [Bifidobacterium gallicum DSM 20093]
          Length = 602

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 101/242 (41%), Positives = 144/242 (59%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DA++ S KL+ R G + + + GI++WLPLG   L+ + AIIREE 
Sbjct: 6   RMSSLFLRTLREDPADADVDSDKLLQRAGYLRKAAPGIWTWLPLGLSVLNKIEAIIREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+  P L     +  + R++ YG+ + RL DR++   +  PTHEE+ T + +  
Sbjct: 66  NGIGAQEVHFPALLPRAPYEATHRWEEYGENLFRLKDRHEADYLLAPTHEEMFTLLVKDM 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG K  Y +   +Y
Sbjct: 126 YSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDEEGMKRCYMEERAAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RL L+ +P+ A SGP+GG  S EF+     GE     +     + + +  T   +
Sbjct: 186 ERIFQRLDLQYVPVFAMSGPMGGSASEEFLAPLAIGEDTFALAPSGKAWNVEALKTPEVE 245

Query: 242 II 243
            I
Sbjct: 246 EI 247



 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 4/190 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+        RG+E+G +F  G KYS  +       +GK   V MG
Sbjct: 413 GTVEAVVVRDGDMSPDGSGPLSFERGVEIGQVFQLGLKYSEALGLNVLNQNGKSVPVWMG 472

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  RV+A + ES HD +G+ WP ++AP ++ ++     D+   +A EK+ A L   
Sbjct: 473 CYGIGVSRVLACIAESHHDERGLAWPANIAPAQVHVVATG-KDEAAFEAAEKLVAELEAR 531

Query: 376 GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD  +   G +F  A+L+G PL  + G   V+D  +E++ R    ++ +  E  
Sbjct: 532 GVEVIFDDRKKVSPGVKFKDAELIGVPLIAVAGRDTVNDGTIEVRLRDGSDKQAVPAETA 591

Query: 435 INYASHRFSN 444
               + R +N
Sbjct: 592 AQVIADRVAN 601


>gi|309800860|ref|ZP_07694992.1| threonine--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
 gi|308222396|gb|EFO78676.1| threonine--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
          Length = 677

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/459 (14%), Positives = 135/459 (29%), Gaps = 50/459 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPAMRLDEEKDENGNIIKQGFDYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 420

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 421 DEL-KNLLTFVLGLLKDFGLDDFYLELST----------------KDPHKYVGSDEIWEE 463

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +      +            A Y       + +  D++    +VS   ++    F  
Sbjct: 464 ATNTLAEVAKESGLELVDDPCGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 516

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
             ++       +  ADG       +     G++    AV+   + G    W   V    +
Sbjct: 517 PERF----KLEYIAADGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAPVQVLGV 572

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +              ++  A L +       D   ++ G +   A     P  +IVG +
Sbjct: 573 PVA------DEFAPHLQRFIASLEEETVRCEIDMSDDRFGKKIRNASKSKVPFILIVGEE 626

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            ++++ V  + R       + ++E  N           V
Sbjct: 627 DMNNNAVSFRFRDGSQLNGVPVDEAKNQIMTVLRKRVQV 665


>gi|208434081|ref|YP_002265747.1| threonyl-tRNA synthetase [Helicobacter pylori G27]
 gi|238065115|sp|B5Z9Q1|SYT_HELPG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|208432010|gb|ACI26881.1| threonyl-tRNA synthetase [Helicobacter pylori G27]
          Length = 612

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 151/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F                + L  
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCS-----FEQIQSEVSAILDF 379

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                         +  I       + +   T   +        +    +      +   
Sbjct: 380 --------------THKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATSALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 ERNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E ++    +   
Sbjct: 589 QAQYKMPLKEFLSMVESKMQE 609


>gi|260905197|ref|ZP_05913519.1| prolyl-tRNA synthetase [Brevibacterium linens BL2]
          Length = 615

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 107/279 (38%), Positives = 156/279 (55%), Gaps = 2/279 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  F+   +E+P  AE+ASHKL+ R G I + + GIY+WLPLG + L  + AI+REE 
Sbjct: 4   RMSSLFVRTQKEDPVGAEVASHKLLHRAGYIRRSAPGIYTWLPLGLQVLGKIEAIVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R G+ E+  P L  AD + +SGR++++G ++  L DR D   I  PTHEEV T + +  
Sbjct: 64  ARAGSQEVHFPGLLPADPYRKSGRWEAFGPDLFHLKDRKDNDYILAPTHEEVFTLLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + YQ+Q K+RDE RPR G++R REF+MKDAYSFD+   G   SY  M V+Y
Sbjct: 124 YSSYKDLPLSIYQVQTKYRDEARPRAGLLRGREFIMKDAYSFDIDDAGLDASYEAMRVAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           LR F RLG+  +P++A  G +GG  + EFI  ++ GE     S       + +  +   +
Sbjct: 184 LRAFARLGVPCLPVKATPGAMGGSGTEEFIYPSEVGEDTFVRSPGGYAANVEAVTSIVPE 243

Query: 242 IISLNSIVEQ--WTAPYAATSDVHNEKLFDSLPENKRVS 278
            I   +         P   T +   +    + P   R  
Sbjct: 244 TIPFENSPAAHVEDTPDTPTIETLVDAANANHPREDRAW 282



 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/182 (32%), Positives = 94/182 (51%), Gaps = 5/182 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +     L D  P+       ARG+E+G IF  G KY+  +       +GK   V MG
Sbjct: 409 GTIEAAEVVLGDPAPDGSGPLELARGVEIGQIFKLGRKYAEALDLKVLDQNGKATTVTMG 468

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  RV+A + E  H   G++WP  +AP  + +I      +   +A EK+ A L   
Sbjct: 469 SYGLGVTRVMACIAEEYHSEGGLLWPQHLAPADVHIIAAGKG-EEIAEAAEKLTAELESE 527

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V  DD      G +FA A+L+G P  ++VG + ++D  VE+++RL   ++++ + EV
Sbjct: 528 GVSVLLDDRLKVSPGFKFADAELIGIPTVIVVG-RGLADGVVEVRNRLADEKQEVPVAEV 586

Query: 435 IN 436
           + 
Sbjct: 587 VA 588


>gi|55741823|ref|NP_001006977.1| threonyl-tRNA synthetase, cytoplasmic [Rattus norvegicus]
 gi|59896667|sp|Q5XHY5|SYTC_RAT RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53734298|gb|AAH83914.1| Threonyl-tRNA synthetase [Rattus norvegicus]
          Length = 695

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 150/445 (33%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 278 KLLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNTLMEFIRSE 335

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M    +   +     P +      +F  
Sbjct: 336 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSF-EVEKEQFALKPMNCPGHCLMFDH 394

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 395 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 453

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E    A+                        
Sbjct: 454 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIEIWNQAEK-----------------QLENSL 495

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 496 NEFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 544

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 545 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 600

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+          V  D D G  +  +   A L  +   ++VG K  +   V
Sbjct: 601 --TCDEYAQKVRQEFHDAKFMVDIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTV 658

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R   +  + ++ E +      
Sbjct: 659 NIRTRDNKVHGERTVGETVERLQQL 683


>gi|116617800|ref|YP_818171.1| prolyl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122271999|sp|Q03YC4|SYP_LEUMM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116096647|gb|ABJ61798.1| Prolyl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 572

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 103/235 (43%), Positives = 148/235 (62%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L++ P +AE+ SH+L+L+ G I   + G++S+LPL ++ L+ +  IIREE
Sbjct: 1   MKQSKLLMPTLRDIPAEAEVKSHQLLLKAGYIRPIAAGMFSYLPLAKRVLNKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++  A EM VP +  A+LW  SGRY++YG  + +  +R D+  I GPTHEE  T +   
Sbjct: 61  MDKIDANEMLVPEVLPAELWQRSGRYETYGPALYKFKNRQDRDFILGPTHEETFTQLIAD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R+REF+MKDAYSF    EG   +++ M  +
Sbjct: 121 EIKSYKKLPLTVYQIQAKFRDENRPRFGLLRTREFIMKDAYSFSADQEGLDEAFHNMEEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF RLGL+   +  ++G +GG  S EF   A  GE  +  S    D+    E
Sbjct: 181 YTNIFDRLGLEYRAIVGDAGAMGGSDSKEFSAPAAAGEDTIAYSD-ATDYAANLE 234



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 88/158 (55%), Gaps = 1/158 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            + K     GIE+GHIF  GT+YS  + A     +G+   V MGSYGIG  R+++A+ E 
Sbjct: 398 GKGKLQFTSGIEIGHIFKLGTRYSKTLGAQVLDNNGRQTDVIMGSYGIGVSRLLSAIAEQ 457

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++WP SVAPF I ++ I   D+      E++   L   G +V  DD  E+ G +
Sbjct: 458 KADEDGLVWPASVAPFDIHIVPINMKDEDQARVAEQLETLLVAQGMEVLVDDRKERAGVK 517

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           FA ADL+G P+++ VG K   +  VE+K R +    +M
Sbjct: 518 FADADLIGLPIRITVGKK-ADEDVVEVKVRASNTNIEM 554


>gi|126321714|ref|XP_001373481.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 723

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 73/449 (16%), Positives = 152/449 (33%), Gaps = 44/449 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   ++P G    + +   IR E
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFMPKGAYIYNTLVEFIRNE 363

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 364 YRKRGFQEVVTPNIYNSKLWLTSGHWQHYSENMFSFEVEKEI-FALKPMNCPGHCLMFDH 422

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 423 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTMEQ-IEEEIKNCLD 481

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +++  G         + P       E    A+                     +  
Sbjct: 482 FLRTVYNVFGFSFKLN-LSTRPEKFLGDVEIWNQAEK-----------------QLESSL 523

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 524 NEFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 572

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 573 LTYVSHDGDDKKRPVIIHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 628

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K  +   V
Sbjct: 629 --TCDEYAQKVQQQFHNANLMTDSDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKTSGTV 686

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I+ R   +  + ++ E I          
Sbjct: 687 NIRTRDNKVHGERTVSETIERLQQLKQTR 715


>gi|254421628|ref|ZP_05035346.1| prolyl-tRNA synthetase [Synechococcus sp. PCC 7335]
 gi|196189117|gb|EDX84081.1| prolyl-tRNA synthetase [Synechococcus sp. PCC 7335]
          Length = 597

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 116/235 (49%), Positives = 153/235 (65%), Gaps = 4/235 (1%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
                L+E+P +AEI SHKL+LR G + + + G+Y++LPL Q+ LD V+AI+REE N TG
Sbjct: 1   MLFVTLREDPAEAEIPSHKLLLRAGYMRRIASGLYAYLPLLQRVLDKVSAIVREEMNATG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           A E  +P LQ A LW ESGR+D+Y K    M  L DR D+ +  GPTHEEV+T I R  I
Sbjct: 61  AQECLLPQLQPASLWKESGRWDTYTKAEGIMFSLGDRRDQELALGPTHEEVITAIARDMI 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKD YSF    E  K +Y++M+ +Y 
Sbjct: 121 RSYKQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTDAESLKATYDQMYRTYS 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            I  R GL    + A+SG IGG  S EF+VLA+ GE +V  ++D   +    E  
Sbjct: 181 NILRRTGLAFRAVEADSGAIGGSGSTEFMVLAEAGEDEVLYTEDGH-YSANVEKA 234



 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 102/195 (52%), Gaps = 3/195 (1%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKG 304
           +  +++  P              ++ +  ++    RGIE+GHIF  G KYS  + AT+  
Sbjct: 395 NWGKEFVLPQRRMDLRTAIAGDRAVHDPTQIIQTARGIEIGHIFQLGHKYSEALGATYTS 454

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             GK+  ++MG YG+G  R+  A +E S+D  GIIWP ++AP+   ++     D     A
Sbjct: 455 EQGKEVPLEMGCYGVGVSRLAQAAVEQSYDKNGIIWPVAIAPYHAIVVVPNIGDDDQMAA 514

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++Y  L+  G +   DD  E+ G +F  A+L+G P +V+ G + +   KVE+  R  G
Sbjct: 515 AKQLYDDLNSAGVETLLDDRKERAGVKFKDAELVGIPFRVVTG-RSLKQGKVEVAKRANG 573

Query: 425 IREDMSLEEVINYAS 439
             E+++L+E ++   
Sbjct: 574 EVEEIALDEAVHTIK 588


>gi|124022453|ref|YP_001016760.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
 gi|152112941|sp|A2C7N5|SYP_PROM3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123962739|gb|ABM77495.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
          Length = 599

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 113/240 (47%), Positives = 151/240 (62%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEIASH+L+LR G I + + GIY++LPL  + L  + AI++EE
Sbjct: 1   MRVSRLMLVTLRDVPADAEIASHQLLLRGGYIRRVTSGIYAYLPLMWRVLRKITAIVQEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA+E  +P LQ A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MDATGALETLLPQLQPAELWRRSGRWQGYTAGEGLMFHLEDRQGRELGLGPTHEEVITSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF         +Y  M
Sbjct: 121 AGDLLRSYRQLPVTLYQIQSKFRDEIRPRFGLMRGREFIMKDAYSFHACEADLAMTYTAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y RIF R GL+++ + A+SG IGG  S EF+V AD GE  +  S D + +    E  
Sbjct: 181 DEAYQRIFSRCGLETVAVEADSGAIGGASSQEFMVTADAGEDLILISGDGL-YAANQEKA 239



 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 4/190 (2%)

Query: 260 SDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            D+   +  D    +        RGIEVGHIF  G KYS  + A F    G      MG 
Sbjct: 407 VDLRKSQAGDRCIHDSSQILEERRGIEVGHIFQLGRKYSEALEACFTNDKGTQEPFWMGC 466

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+  A +E  HD  G+ WP ++APF++ ++     D+V +   E++Y+ L    
Sbjct: 467 YGIGISRLAQAAVEQHHDEAGMNWPLAIAPFEVIIVVANIQDEVQQKLAEQLYSELQAAD 526

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G +F  ADL+G P +++VG +  +  +VE+  R +   E +S  +   
Sbjct: 527 IEVLLDDRNERAGVKFKDADLIGIPWRIVVG-RDAAKGQVELIQRSSRKVEILSATQAFT 585

Query: 437 YASHRFSNNR 446
                 + N+
Sbjct: 586 ALVQEIAANQ 595


>gi|298252610|ref|ZP_06976404.1| prolyl-tRNA synthetase [Gardnerella vaginalis 5-1]
 gi|297532974|gb|EFH71858.1| prolyl-tRNA synthetase [Gardnerella vaginalis 5-1]
          Length = 603

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 106/283 (37%), Positives = 155/283 (54%), Gaps = 2/283 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ FL  L+E+P DA++ S KLM R G I + + G+++WLPLG K L+ V AIIR+E N
Sbjct: 1   MSQLFLRTLREDPADADVTSAKLMQRAGYIRKSAPGVWTWLPLGLKVLNKVQAIIRDEIN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  + R++ YG  + RL DR+    +  PTHEEV T + +   
Sbjct: 61  GIGAQEVHFPALLPREPYEATNRWEEYGDNIFRLKDRHQADYLLAPTHEEVFTLLVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+M+DAYSF +  +G K +Y +   +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMQDAYSFSIDEDGLKSAYVEERAAYA 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--DFD 240
           RIF RLG+K + + A SGP+GG  S EF+     GE     +     + + +  T    D
Sbjct: 181 RIFDRLGIKYVIVHAVSGPMGGSDSEEFLAPMPIGEDTFALAPSGKAWNVEALTTPEMQD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
              S     +    P A T +   +   D  P       +  +
Sbjct: 241 VDYSATPAAQSLETPDAKTIEALVKVSNDLHPRKDGREWQASD 283



 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 4/208 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLP 297
           +D   + + V           +    +  D  P+        RG+E+G +F  G KYS  
Sbjct: 394 EDGKHVYNAVYGRDFEADGVVEAAQVRDGDMSPDGSGPLSFERGVEIGQVFQLGLKYSKA 453

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +  +    +GK   V MG YGIG  RV+A + E+ HD  G+ WP ++AP ++ ++     
Sbjct: 454 LGLSVLNENGKAVPVWMGCYGIGVSRVIACLAETHHDDAGLAWPMAIAPAQVHVVATG-K 512

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           DQV  DA EK+   LSK G +V +DD      G +F  A+L+G PL  + G   V++  +
Sbjct: 513 DQVAFDAAEKVVEELSKQGIEVIFDDRPKVSPGVKFKDAELVGVPLIAVAGRDTVNNGTI 572

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           EI++R     E + ++E       R ++
Sbjct: 573 EIRNRDGSNVEAVPVDEAAARIVSRVND 600


>gi|328774228|gb|EGF84265.1| hypothetical protein BATDEDRAFT_8061 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 581

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/448 (16%), Positives = 151/448 (33%), Gaps = 41/448 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           ++ L   + + RD  +   K  L        S G   +LP G + +  +   +R E  + 
Sbjct: 155 EWTLQRQEASKRDHRLIGQKQSLF--YFSPLSLGAPFFLPHGTRIIQRLTDFLRHEYRKY 212

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P + +  LW +SG + +Y +++      +       P +      +F S  +S
Sbjct: 213 GFDEIVTPLVFNKSLWEKSGHWKNYKEDITVDQLNDADIQALKPMNCPGHCLLFSSTSRS 272

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + +     R+E      G+ R R+F   D + F  TP                
Sbjct: 273 YRDLPIRYAEFSPLHRNEASGALTGLTRVRKFHQDDGHIFC-TPSQIAQEIQSTLKFIDT 331

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++ ++        A S                  E+    +    +    +         
Sbjct: 332 MYTKILHFPQYTLALSTRP---------------ESGHVGTLTQWEAAETALKEALTQFG 376

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +I     A Y    D+   K+ D++  + + +   ++      F  +YS     T  
Sbjct: 377 KPWTINHGDGAFYGPKIDI---KVRDAIGRDHQTATVQLDFQLPKQFQLQYSTGK--TGP 431

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G++  + A++    +  G  WP  ++P +  +I          +
Sbjct: 432 EDAAMETPVMIHRAVLGSVERMLAILA---EHYGGKWPFWMSPRQAIVIPTNK---TLNE 485

Query: 364 ACEKIYA------RL-----SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
             + +         L           +  DD    +  +   A LL F   ++VG K   
Sbjct: 486 YAQSVKNNIANPSELDGSNSCSAYYHIEVDDSDHLLSKRVREAQLLQFNYILVVGDKEQE 545

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASH 440
              V ++ R       M+++++    + 
Sbjct: 546 TGTVNVRSRTGKQLGLMTVDQLRALFAK 573


>gi|261838989|gb|ACX98754.1| threonyl-tRNA synthetase [Helicobacter pylori 52]
          Length = 612

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 151/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F                + L  
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCS-----FEQIQSEVSAILDF 379

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                         +  I       + +   T   +        +    +      +   
Sbjct: 380 --------------THKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATSALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 GYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 ERNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHA 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEVLKKCDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|224613500|gb|ACN60329.1| Threonyl-tRNA synthetase, cytoplasmic [Salmo salar]
          Length = 383

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 136/413 (32%), Gaps = 38/413 (9%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            S G   +LP G    + +   I+ E  R G  E+  PTL S  LW  SG ++ Y + M 
Sbjct: 1   VSPGSCFFLPKGAHIYNTLADFIKTEYRRRGFHEVVTPTLYSTALWERSGHWEHYSENMF 60

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSR 153
            +           P +      +F   ++S+R LP  +       R+EL     G+ R R
Sbjct: 61  TVTGDT-HTYALKPMNCPAHCLMFEQRVRSWRELPLRWADFGALHRNELSGALGGLTRVR 119

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F   DA+ F  TPE  +            ++   G     +   + P      H     
Sbjct: 120 RFCQDDAHIFC-TPEQLEEEIMACLDFVRSVYRVFGFSFHCL-LSTRPTPCLGEH----- 172

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                          D                  +     A Y    D+   ++ D++  
Sbjct: 173 ------------ALWDHAEQQLERSLQQFGERWQLNPGDGAFYGPKIDI---QIKDAIGR 217

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
             + +   ++    F    ++ L       G       V +    +G++  + A++    
Sbjct: 218 QHQCATIQLD----FQLPIRFDLQY---VGGDGETHRPVMVHRAVLGSLERMIAILA--- 267

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW-DDMGEQIGSQF 392
           +  G  WP  ++P ++ +I +    +      +++  +  + G      DD G  +  + 
Sbjct: 268 ENFGGKWPLWLSPAQVIIIPVGGGSET---YAQQVVRQFREAGFMADVDDDQGATLNKKI 324

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             A L  +    +VG K      V ++ R          EEV+   SH     
Sbjct: 325 RSAQLAQYNYIFVVGEKECESGTVSVRTRGGKQLGRRPTEEVLASLSHLRDTR 377


>gi|312195504|ref|YP_004015565.1| prolyl-tRNA synthetase [Frankia sp. EuI1c]
 gi|311226840|gb|ADP79695.1| prolyl-tRNA synthetase [Frankia sp. EuI1c]
          Length = 580

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 89/229 (38%), Positives = 142/229 (62%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+ F+  L+E+P DAE A+H+L++R G + + + GIYS+LPLG + L  + A++R+E  
Sbjct: 13  LSRTFIRTLREDPADAETANHRLLVRGGYVRKAASGIYSYLPLGLRVLRRIEAVVRQEMA 72

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+ +P L   +LW  SGR+  YG  M R+ DR       GPTHEE++T +  + +
Sbjct: 73  AAGCQELLMPALMPRELWDRSGRWADYGDLMFRVVDRKGTEFCLGPTHEELITSLVANEL 132

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
             +R+LP   +QIQ K+RDELRPR G++RSR+F+MKDAY+F    +  + +Y +M+ +Y 
Sbjct: 133 GGHRDLPLRVFQIQTKYRDELRPRSGLVRSRDFVMKDAYTFHADEDSLRETYREMYAAYE 192

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           R+F R GL+   + A++G +GG  + EF+   + GE  V  + +     
Sbjct: 193 RVFTRCGLRFRAVEAQAGEMGGGRNQEFMAPTEIGEDLVAFAPNGTYAA 241



 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 6/182 (3%)

Query: 260 SDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +DV N +  D+ P+        R +E+GHIF  GT+YS+P+ ATF  A G +    MG Y
Sbjct: 395 ADVVNVRAGDASPDDSGPLTLERAVEIGHIFQLGTRYSVPLGATFLDAAGVERPALMGCY 454

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++ VIE  HD  GI WP  +AP+ + +I +        D    +   L+ VG 
Sbjct: 455 GIGISRLMSVVIEQHHDEHGIRWPAELAPYDVQVIPLGRRVDE--DLVRSVADMLAGVGL 512

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +V  DD  G   G +FA ADL+G P QV++G +  ++   E++ R      +++L E+ N
Sbjct: 513 EVLVDDRSGASAGVKFADADLIGAPFQVVLGRR-AAEGIAELRTRDRSTVTEVALTELTN 571

Query: 437 YA 438
             
Sbjct: 572 VI 573


>gi|283456070|ref|YP_003360634.1| ThrS Threonyl-tRNA synthetase [Bifidobacterium dentium Bd1]
 gi|283102704|gb|ADB09810.1| ThrS Threonyl-tRNA synthetase [Bifidobacterium dentium Bd1]
          Length = 677

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/459 (14%), Positives = 135/459 (29%), Gaps = 50/459 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPAMRLDEEKDENGNIIKQGFDYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 420

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 421 DEL-KNLLTFVLGLLKDFGLDDFYLELST----------------KDPHKYVGSDEIWEE 463

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +      +            A Y       + +  D++    +VS   ++    F  
Sbjct: 464 ATNTLAEVAKESGLELVDDPCGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 516

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
             ++       +  ADG       +     G++    AV+   + G    W   V    +
Sbjct: 517 PERF----KLEYIAADGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAPVQVLGV 572

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +              ++  A L +       D   ++ G +   A     P  +IVG +
Sbjct: 573 PVA------DEFAPHLQRFIASLEEETVRCEIDMSDDRFGKKIRNASKSKVPFILIVGEE 626

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            ++++ V  + R       + ++E  N           V
Sbjct: 627 DMNNNAVSFRFRDGSQLNGVPVDEAKNQIMTVLRKRVQV 665


>gi|254432589|ref|ZP_05046292.1| prolyl-tRNA synthetase [Cyanobium sp. PCC 7001]
 gi|197627042|gb|EDY39601.1| prolyl-tRNA synthetase [Cyanobium sp. PCC 7001]
          Length = 615

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 111/225 (49%), Positives = 147/225 (65%), Gaps = 3/225 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L+++P +AEI SHKL+LR G + +   GIY++LPL  + L  V+AI+REE
Sbjct: 1   MRVSRLMLVTLRDDPAEAEIPSHKLLLRAGYMRRIGSGIYAYLPLLWRVLRKVSAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  GA+E  +P +Q A+LW  SGR+  Y      M  L DR  +AM  GPTHEEV+T +
Sbjct: 61  LDAIGALETLLPQMQPAELWQRSGRWSGYTDGEGIMFHLEDRQGRAMGLGPTHEEVVTAL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y  M
Sbjct: 121 AADLLRSYRQLPVTLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEASLRRTYAAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
             +Y RIF R GL+++ + A+SG IGG  S EF+V AD GE  V 
Sbjct: 181 DRAYARIFRRCGLRALAVEADSGAIGGSASQEFMVTADAGEDLVL 225



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 102/196 (52%), Gaps = 4/196 (2%)

Query: 254 APYAATSDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            P     D+   +  D     P+    S+RGIEVGHIF  G KYS  M A+F    G++ 
Sbjct: 409 CPLPEPLDLRAAQPGDRCVHDPDQCLQSSRGIEVGHIFQLGRKYSSAMEASFTNEAGEEE 468

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MG YGIG  R+  A +E  HD +GI WP  +APF++ ++     D       E+IYA
Sbjct: 469 PLWMGCYGIGVSRLAQAAVEQHHDDQGIRWPTPIAPFEVIVVVANGADATQAALGEQIYA 528

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L + G D   DD  E+ G +F  ADL+G P +V+VG +   D +VE+  R  G+R D++
Sbjct: 529 TLQQAGVDTLLDDRSERAGVKFKDADLIGIPWRVVVG-RGAPDGQVELVRRADGVRVDLA 587

Query: 431 LEEVINYASHRFSNNR 446
            E ++       +  R
Sbjct: 588 AEALLERLLPALARER 603


>gi|149027311|gb|EDL82978.1| threonyl-tRNA synthetase, isoform CRA_b [Rattus norvegicus]
          Length = 433

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 150/445 (33%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 16  KLLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNTLMEFIRSE 73

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M    +   +     P +      +F  
Sbjct: 74  YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSF-EVEKEQFALKPMNCPGHCLMFDH 132

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 133 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 191

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E    A+                        
Sbjct: 192 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIEIWNQAEK-----------------QLENSL 233

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 234 NEFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 282

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 283 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 338

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+          V  D D G  +  +   A L  +   ++VG K  +   V
Sbjct: 339 --TCDEYAQKVRQEFHDAKFMVDIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTV 396

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R   +  + ++ E +      
Sbjct: 397 NIRTRDNKVHGERTVGETVERLQQL 421


>gi|149027310|gb|EDL82977.1| threonyl-tRNA synthetase, isoform CRA_a [Rattus norvegicus]
          Length = 722

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 150/445 (33%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 305 KLLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNTLMEFIRSE 362

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M    +   +     P +      +F  
Sbjct: 363 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSF-EVEKEQFALKPMNCPGHCLMFDH 421

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 422 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 480

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E    A+                        
Sbjct: 481 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIEIWNQAEK-----------------QLENSL 522

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 523 NEFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 571

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 572 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 627

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+          V  D D G  +  +   A L  +   ++VG K  +   V
Sbjct: 628 --TCDEYAQKVRQEFHDAKFMVDIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTV 685

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R   +  + ++ E +      
Sbjct: 686 NIRTRDNKVHGERTVGETVERLQQL 710


>gi|227488772|ref|ZP_03919088.1| threonine--tRNA ligase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542231|ref|ZP_03972280.1| threonine--tRNA ligase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091194|gb|EEI26506.1| threonine--tRNA ligase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227182060|gb|EEI63032.1| threonine--tRNA ligase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 689

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 63/454 (13%), Positives = 134/454 (29%), Gaps = 48/454 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L +    +   G   + P G      +    R      G
Sbjct: 258 YLTMLEEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPDGGIIRLEMEEHSRRRHLENG 316

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND------------KAMIYGPTHEEV 113
              ++ P +   DL+ +SG  D Y   M      +             +     P +  +
Sbjct: 317 YSFVNTPHITKGDLFQKSGHLDFYADGMFPPMQLDGEYDEDGNCTKQPQDYYAKPMNCPM 376

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKH 172
              I+ S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T E  + 
Sbjct: 377 HNLIYASRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYC-TEEQLED 435

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    L +    GL    +   +                    +   S +  +   
Sbjct: 436 ELTGVLNFILSLLKDYGLNDFYLELST----------------KDPNKFVGSDEIWEKST 479

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                                A Y       + +  D++    ++S   ++    F    
Sbjct: 480 AILERVAKASGLELVPDPAGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLPE 532

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           ++ L  +A+      K   + +     G++     V+   + G    W        I + 
Sbjct: 533 RFELEYTAS---DGSKKRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVTGIPVA 589

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                     D  E +  +L   G     D   +++  +         P  ++ G++   
Sbjct: 590 ------DEFVDYLEGVIGKLKAQGIRAEVDTSDDRMQKKIRNHTTGKVPFMLLAGARDQE 643

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              V  +         +  ++ +   +    + +
Sbjct: 644 AGAVSFRFLDGSQVNGVPADKAVEIITSWVRSRK 677


>gi|210134324|ref|YP_002300763.1| threonyl-tRNA synthetase [Helicobacter pylori P12]
 gi|238065114|sp|B6JPM2|SYT_HELP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|210132292|gb|ACJ07283.1| threonyl-tRNA synthetase [Helicobacter pylori P12]
          Length = 612

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 152/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSQALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F    +          + +   
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSE--VSAILDFTHK 382

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             +    S  M   + P       E                   +    +      +   
Sbjct: 383 IMQAFDFSYEMELSTRPAKSIGDDE-----------------VWEKATSALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 ERNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEVLKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|323450323|gb|EGB06205.1| hypothetical protein AURANDRAFT_29703 [Aureococcus anophagefferens]
          Length = 750

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/431 (16%), Positives = 133/431 (30%), Gaps = 39/431 (9%)

Query: 12  QENPRDAEIAS--HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           +   RD        KL        Q S G   + P G +  + + A I+++       E+
Sbjct: 324 EAAKRDHRKVGGAQKL----FFFDQLSPGSAFFEPHGARIYNGLIAFIKDQYWLREYTEV 379

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + + DLW  SG    Y  +M    D         P +      +F+  ++S+R+LP
Sbjct: 380 VTPNVYNFDLWHTSGHALHYKDDMF-CFDVEGAEFGMKPMNCPGHCLMFKHDVRSWRDLP 438

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             +    +  R+EL     G+ R R F   D + F    +  +            ++   
Sbjct: 439 MRYADFGVLHRNELSGALSGLTRVRRFQQDDGHIFCR-EDQVEEEVRGALEFMKHVYDVF 497

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL--N 246
           G+    +   + P                  +    K   D    +  +  D        
Sbjct: 498 GMGYR-LELSTRP-----------------KKALGDKAVWDRAEAALASAMDAFAGKGGW 539

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
            +     A Y    D+   K+ D+L    + +   ++      F  KY +  ++  +G  
Sbjct: 540 RVNPGDGAFYGPKIDI---KVTDALERVHQCATIQLDFQLPIRFDLKYRVGDTSGEEGGA 596

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                +   +      R++A + E                                D   
Sbjct: 597 VTRPIIIHRAMLGSVERMMAVLTEHWGGKWPFWISPRQVCVIPVGPT-------NFDYAR 649

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   +      V  DD G  +  +   A L  +   ++VG   VSD  V ++ R   + 
Sbjct: 650 AVRKTIRAARFFVDVDDSGNTLPKKVRNAQLAQYNFILVVGDNEVSDGTVTVRTRANTVE 709

Query: 427 EDMSLEEVINY 437
             + L + +  
Sbjct: 710 GTVPLADFVAR 720


>gi|256847045|ref|ZP_05552491.1| prolyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715709|gb|EEU30684.1| prolyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
          Length = 577

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 111/237 (46%), Positives = 146/237 (61%), Gaps = 2/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +E P DAE  SHK+M+R G I+Q S G++S+LPL  + +  V AIIREE
Sbjct: 1   MKQSKILIPTKKEAPSDAEALSHKMMIRAGYIYQVSSGVWSYLPLAYRVIRKVKAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A EM  P++  ADLW ++GRY++YG  + +  DRND+  I GPT EEVMT+I R 
Sbjct: 61  MEKADAFEMETPSMLPADLWQQTGRYEAYGDTLFKFKDRNDREHILGPTDEEVMTEILRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQI  KFRDE RPRFGV+R +EF M D YSF     G   +YN+   +
Sbjct: 121 SIKSYKKLPLTVYQITDKFRDEPRPRFGVLRGKEFSMLDGYSFAADQAGLDEAYNQQAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF R+GL    + A+SG IGGD S EF   A  GE  +  +    D+    E  
Sbjct: 181 YRNIFDRIGLDYKIILADSGTIGGDNSQEFSAPAKVGEDTIVYTDG--DYAANLEKA 235



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/184 (36%), Positives = 97/184 (52%), Gaps = 2/184 (1%)

Query: 261 DVHNEKLFDSLPENK-RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           D    +  +  P+        GIE+GHIF  GT YS  + A     +G+   + MG YGI
Sbjct: 387 DFRTVQEGEIAPDGNPIKFTNGIEIGHIFKLGTGYSEKLGAQVLDQNGRLVDMIMGCYGI 446

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R+++AV E + D  G++WPDS+APF + +I + A          +I  +L K G +V
Sbjct: 447 GVTRLLSAVAEQNADEYGLVWPDSIAPFDVHVIPVNAKKADQMKMANEISEQLEKAGLEV 506

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E+ G +FA +DL+G PL+V VG K  S+  VEIK R TG   ++  EEV N   
Sbjct: 507 LVDDRKERAGVKFADSDLIGIPLRVTVGKK-ASEGIVEIKIRKTGETVEVKTEEVANTVQ 565

Query: 440 HRFS 443
               
Sbjct: 566 ILLK 569


>gi|299745880|ref|XP_001841372.2| tars protein [Coprinopsis cinerea okayama7#130]
 gi|298406796|gb|EAU80442.2| tars protein [Coprinopsis cinerea okayama7#130]
          Length = 720

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/451 (16%), Positives = 150/451 (33%), Gaps = 45/451 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+Y   + +   RD      +  L     +  S G   WLP G +  + +  ++REE  
Sbjct: 302 LSEYKKFLEEAAKRDHRKIGREQEL--WFFNDLSPGSCFWLPHGTRIYNTLVELMREEYF 359

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW  SG + +Y ++M  L D   +     P +      IF S  
Sbjct: 360 KRGYQEVISPNMYNSKLWETSGHWQNYKEDMFTL-DVEKEKWALKPMNCPGHCLIFDSRD 418

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP    +  +  R+E      G+ R R F+  D + F + P   +   + +F   
Sbjct: 419 RSYKELPIRMAEFGIIHRNEASGALTGLTRVRRFVQDDTHVFCM-PSQLEDEISALFDFM 477

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                               I G    EF +   T         +  +          + 
Sbjct: 478 RH------------------IYGLFGFEFHLELSTRPENFLGEIETWNQAEDQLKQALEK 519

Query: 242 I-ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  +     A Y    D+    + D+L  + + +   ++    F    +++L   +
Sbjct: 520 HYPGQWELNPGDGAFYGPKIDI---TIRDALKRSFQCATIQLD----FQLPERFNLKYRS 572

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-GKGIIWPDSVAPFKISLINIKAHDQ 359
                      V +    +G++    A++                          K    
Sbjct: 573 A--DESELTRPVIIHRAILGSLERFVAIVTEHFAGKWPFWLSPRQILVIPVAAPYK---- 626

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   +I  RL+ +G     D+    +  +    ++  +   ++VG + +    V ++
Sbjct: 627 ---EYAAEIANRLTSLGLYADVDNGENTLPKKIRNGEIAQYNFILVVGQEELDARSVNVR 683

Query: 420 HRLT-GIR---EDMSLEEVINYASHRFSNNR 446
           +R   G +   + + LE VI          R
Sbjct: 684 NRDDVGTKAKGQMVPLETVIEQFVSLKKERR 714


>gi|23466273|ref|NP_696876.1| prolyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|227546627|ref|ZP_03976676.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|81847214|sp|Q8G3N0|SYP_BIFLO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|23327022|gb|AAN25512.1| prolyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|227212944|gb|EEI80823.1| prolyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291516313|emb|CBK69929.1| prolyl-tRNA synthetase, family II [Bifidobacterium longum subsp.
           longum F8]
          Length = 597

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 106/283 (37%), Positives = 155/283 (54%), Gaps = 2/283 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE N
Sbjct: 1   MSTMFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREEIN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +   
Sbjct: 61  GIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYYDERGAYE 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF--D 240
           RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + + +T    +
Sbjct: 181 RIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEALSTPELPE 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
              S      +   P A T D   E+     P       +  +
Sbjct: 241 IDASTTPAASKEATPDAKTIDNMIERANADHPRTDGREWQASD 283



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 4/191 (2%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLP 297
           ++ +   ++V           +    +  D  P+        RG+E+G +F  G KYS  
Sbjct: 389 ENEVDYYNLVYGRDFKVDGVVEAVEVRHGDMSPDGSGPLSFERGVEIGQVFQLGLKYSKA 448

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +       +GK   V MG YGIG  RV+A + E+ HD  G+ W  SV       +     
Sbjct: 449 LDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLAW-PSVIAPAAVHVVATGK 507

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           D V  +  EK+ A L   G +V +DD  +   G +F  A+L+G PL  +VG  +V+D  +
Sbjct: 508 DAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELIGVPLVAVVGRDYVNDGTI 567

Query: 417 EIKHRLTGIRE 427
           E++ R    + 
Sbjct: 568 ELRDRNGENKV 578


>gi|320580027|gb|EFW94250.1| Threonyl-tRNA synthetase [Pichia angusta DL-1]
          Length = 714

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/451 (16%), Positives = 155/451 (34%), Gaps = 43/451 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  ++   + +   RD      +  L     H+ S G   WLP G +  + +  ++R +
Sbjct: 297 MK--EHLKFLEEAAARDHRKIGREQDLF--FFHEMSPGSCFWLPHGARIYNGLCELLRTQ 352

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW  SG + +Y + M       D      P +      +F+S
Sbjct: 353 YRKRGYEEVITPNMYNSKLWETSGHWANYKENMFTFEVEKDT-FGLKPMNCPGHCLMFKS 411

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP+      +  R+E      G+ R R F   DA+ F  T +  +   + +F 
Sbjct: 412 RERSYRELPWRVADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFC-TQDQIEDEISGVFD 470

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                                 I G    EF +   T   +     +  +       +  
Sbjct: 471 FLQH------------------IYGIFGFEFKMELSTRPEKYVGDIETWNNAEAKLESAL 512

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +       +     A Y    D+    + D+L    + +   ++    F    ++ L   
Sbjct: 513 NKWGGKWELNPGDGAFYGPKIDIM---ISDALKRWHQCATIQLD----FQLPNRFELEFR 565

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                +      V +    +G++  + A++    +     WP  ++P +I ++ +     
Sbjct: 566 GK-DDSAEVQRPVMIHRAILGSIERMTAILT---EHFAGKWPFWLSPRQILVVPVGVR-- 619

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  +++   L   G     D  G  +  +     L  +    IVG +  ++  V I+
Sbjct: 620 -YFDYAQEVQKLLQTEGFYADVDLSGNTLQKKVRTGQLQKYNFIFIVGEQEQNEKAVNIR 678

Query: 420 HRLTGIRED----MSLEEVINYASHRFSNNR 446
           +R     +     + L +V+          R
Sbjct: 679 NRDIQELQSKNDMVKLNDVLPKLHALRDEKR 709


>gi|225352131|ref|ZP_03743154.1| hypothetical protein BIFPSEUDO_03746 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157378|gb|EEG70717.1| hypothetical protein BIFPSEUDO_03746 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 677

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/459 (14%), Positives = 133/459 (28%), Gaps = 50/459 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPAMRLDEEKDENGNVVKQGFDYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 420

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 421 DEL-KNLLTFVLGLLKDFGLDDFYLELST----------------KDPHKYVGSDEIWEE 463

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +      +            A Y       + +  D++    +VS   ++      F
Sbjct: 464 ATNTLAEVAKESGLELVDDPCGAAFYGPKI---SVQARDAIGRTWQVSTIQLDFNLPERF 520

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           G          +  ADG       +     G++    AV+   + G    W   V    +
Sbjct: 521 G--------LEYIAADGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAPVQVLGV 572

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +              ++  A L +       D   ++ G +   A     P  +IVG +
Sbjct: 573 PVA------DEFAPHLQQFIASLEEETVRCEIDMSDDRFGKKIRNASKSKVPFILIVGEE 626

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            ++++ V  + R       + ++E              V
Sbjct: 627 DMNNNAVSFRFRDGSQLNGVPVDEAKAQIMTVLKKRVQV 665


>gi|209879794|ref|XP_002141337.1| threonyl-tRNA synthetase family protein [Cryptosporidium muris
           RN66]
 gi|209556943|gb|EEA06988.1| threonyl-tRNA synthetase family protein [Cryptosporidium muris
           RN66]
          Length = 743

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 142/439 (32%), Gaps = 30/439 (6%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++  L+E   RD  +    L L        S G   WLP G +  + +   IR E    G
Sbjct: 319 YIEFLEEVKKRDHRVIGSNLNLF-FFDTNASVGSCFWLPPGARIYNKMIEFIRSEYRIRG 377

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S DLW  SG Y +Y + M  L +   K     P +      IFR    SY
Sbjct: 378 FEEVVTPNIFSCDLWKTSGHYFAYKENMF-LFEVEKKEWGLKPMNCPGHCIIFRHMNPSY 436

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP       +  R+EL     G+ R R F   DA+ F    +     +         +
Sbjct: 437 KQLPIRMADFGVLHRNELSGALNGLTRVRRFQQDDAHIFCTAEQIQSEVFA-ALEFLFFV 495

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + +LG                    F +   T   +   +++  +    S     +    
Sbjct: 496 YDKLGFS------------------FNLYLGTMPKEHLGTREKWEDAENSLKLALNRTGY 537

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATF 302
              + E   A Y    D+    L+D+L    +     ++      F    +    +    
Sbjct: 538 QWKVNEGDGAFYGPKIDIM---LWDALKRPHQCGTIQLDFQLPIRFNLQYRSDDNILTEG 594

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVC 361
              +  +         +   R +   IE             +  +      I     +  
Sbjct: 595 GDHNLDEELKPGYKRPVIIHRAILGSIERMVAVILENTGGKLPFWLSPRQAIVLPISEKS 654

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + I + L  +G DV  D     I  +   A LL +   +IVG        + ++ R
Sbjct: 655 HDYAKSIESELCCMGYDVGADYSSSTINRKIREAQLLQWNFMLIVGENEAKSGSITVRSR 714

Query: 422 LTGI-REDMSLEEVINYAS 439
            +   + +M L ++I    
Sbjct: 715 DSSTSQRNMILSDLIAEFK 733


>gi|114559283|ref|XP_001168777.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 3 [Pan
           troglodytes]
          Length = 666

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 145/457 (31%), Gaps = 57/457 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
             +   RD      +  L     H+ S G   +LP G +  + + A IR E    G  E+
Sbjct: 242 REEAELRDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEV 299

Query: 70  SVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKAMIYGPTHEEV 113
             PTL S  LW +SG ++ Y ++M                          +   P +   
Sbjct: 300 KTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPA 359

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              +F    +S+R LP          R E      G+ R R F   DA+ F  T +    
Sbjct: 360 HCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAE 419

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                      ++  LG         + P G                         D   
Sbjct: 420 -IQSCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------LGDPCLWDQAE 460

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                   +      +     A Y    DVH   L D+L    +     ++    F    
Sbjct: 461 QVLKQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPL 513

Query: 293 KYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       +KG  G  +  V +    +G++  +  V+    +  G  WP  ++PF++ +
Sbjct: 514 RFD----LQYKGQAGALERPVLIHRAVLGSVERLLGVLA---ESCGGKWPLWLSPFQVVV 566

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           I + +  +   +  ++    L   G     D D G  +  +   A L  +  Q +VG K 
Sbjct: 567 IPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQFVVGQKE 623

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            S   V I+ R      +  L E +       +   P
Sbjct: 624 QSKRTVNIRTRDNRRLGEWDLPEAVQRLVELQNTRVP 660


>gi|114559277|ref|XP_001168750.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 2 [Pan
           troglodytes]
          Length = 635

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 145/457 (31%), Gaps = 57/457 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
             +   RD      +  L     H+ S G   +LP G +  + + A IR E    G  E+
Sbjct: 211 REEAELRDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEV 268

Query: 70  SVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKAMIYGPTHEEV 113
             PTL S  LW +SG ++ Y ++M                          +   P +   
Sbjct: 269 KTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPA 328

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              +F    +S+R LP          R E      G+ R R F   DA+ F  T +    
Sbjct: 329 HCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAE 388

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                      ++  LG         + P G                         D   
Sbjct: 389 -IQSCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------LGDPCLWDQAE 429

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                   +      +     A Y    DVH   L D+L    +     ++    F    
Sbjct: 430 QVLKQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPL 482

Query: 293 KYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       +KG  G  +  V +    +G++  +  V+    +  G  WP  ++PF++ +
Sbjct: 483 RFD----LQYKGQAGALERPVLIHRAVLGSVERLLGVLA---ESCGGKWPLWLSPFQVVV 535

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           I + +  +   +  ++    L   G     D D G  +  +   A L  +  Q +VG K 
Sbjct: 536 IPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQFVVGQKE 592

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            S   V I+ R      +  L E +       +   P
Sbjct: 593 QSKRTVNIRTRDNRRLGEWDLPEAVQRLVELQNTRVP 629


>gi|114559279|ref|XP_001168807.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 4 [Pan
           troglodytes]
          Length = 657

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 145/457 (31%), Gaps = 57/457 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
             +   RD      +  L     H+ S G   +LP G +  + + A IR E    G  E+
Sbjct: 233 REEAELRDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEV 290

Query: 70  SVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKAMIYGPTHEEV 113
             PTL S  LW +SG ++ Y ++M                          +   P +   
Sbjct: 291 KTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPA 350

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              +F    +S+R LP          R E      G+ R R F   DA+ F  T +    
Sbjct: 351 HCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAE 410

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                      ++  LG         + P G                         D   
Sbjct: 411 -IQSCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------LGDPCLWDQAE 451

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                   +      +     A Y    DVH   L D+L    +     ++    F    
Sbjct: 452 QVLKQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPL 504

Query: 293 KYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       +KG  G  +  V +    +G++  +  V+    +  G  WP  ++PF++ +
Sbjct: 505 RFD----LQYKGQAGALERPVLIHRAVLGSVERLLGVLA---ESCGGKWPLWLSPFQVVV 557

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           I + +  +   +  ++    L   G     D D G  +  +   A L  +  Q +VG K 
Sbjct: 558 IPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQFVVGQKE 614

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            S   V I+ R      +  L E +       +   P
Sbjct: 615 QSKRTVNIRTRDNRRLGEWDLPEAVQRLVELQNTRVP 651


>gi|114559269|ref|XP_001168944.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial isoform 9 [Pan
           troglodytes]
          Length = 718

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 145/457 (31%), Gaps = 57/457 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
             +   RD      +  L     H+ S G   +LP G +  + + A IR E    G  E+
Sbjct: 294 REEAELRDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEV 351

Query: 70  SVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKAMIYGPTHEEV 113
             PTL S  LW +SG ++ Y ++M                          +   P +   
Sbjct: 352 KTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPA 411

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              +F    +S+R LP          R E      G+ R R F   DA+ F  T +    
Sbjct: 412 HCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAE 471

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                      ++  LG         + P G                         D   
Sbjct: 472 -IQSCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------LGDPCLWDQAE 512

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                   +      +     A Y    DVH   L D+L    +     ++    F    
Sbjct: 513 QVLKQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPL 565

Query: 293 KYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       +KG  G  +  V +    +G++  +  V+    +  G  WP  ++PF++ +
Sbjct: 566 RFD----LQYKGQAGALERPVLIHRAVLGSVERLLGVLA---ESCGGKWPLWLSPFQVVV 618

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           I + +  +   +  ++    L   G     D D G  +  +   A L  +  Q +VG K 
Sbjct: 619 IPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQFVVGQKE 675

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            S   V I+ R      +  L E +       +   P
Sbjct: 676 QSKRTVNIRTRDNRRLGEWDLPEAVQRLVELQNTRVP 712


>gi|39644807|gb|AAH07824.2| TARS2 protein [Homo sapiens]
          Length = 709

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 145/457 (31%), Gaps = 57/457 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
             +   RD      +  L     H+ S G   +LP G +  + + A IR E    G  E+
Sbjct: 285 REEAELRDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEV 342

Query: 70  SVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKAMIYGPTHEEV 113
             PTL S  LW +SG ++ Y ++M                          +   P +   
Sbjct: 343 KTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPA 402

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              +F    +S+R LP          R E      G+ R R F   DA+ F  T +    
Sbjct: 403 HCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAE 462

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                      ++  LG         + P G                         D   
Sbjct: 463 -IQSCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------LGDPCLWDQAE 503

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                   +      +     A Y    DVH   L D+L    +     ++    F    
Sbjct: 504 QVLKQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPL 556

Query: 293 KYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       +KG  G  +  V +    +G++  +  V+    +  G  WP  ++PF++ +
Sbjct: 557 RFD----LQYKGQAGALERPVLIHRAVLGSVERLLGVLA---ESCGGKWPLWLSPFQVVV 609

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           I + +  +   +  ++    L   G     D D G  +  +   A L  +  Q +VG K 
Sbjct: 610 IPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQFVVGQKE 666

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            S   V I+ R      +  L E +       +   P
Sbjct: 667 QSKRTVNIRTRDNRRLGEWDLPEAVQRLVELQNTRVP 703


>gi|20070344|ref|NP_079426.2| threonyl-tRNA synthetase, mitochondrial precursor [Homo sapiens]
 gi|74752395|sp|Q9BW92|SYTM_HUMAN RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; AltName:
           Full=Threonyl-tRNA synthetase-like 1; Flags: Precursor
 gi|12802990|gb|AAH00541.1| Threonyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|14603040|gb|AAH09997.1| Threonyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|55958996|emb|CAI15488.1| threonyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|119573933|gb|EAW53548.1| threonyl-tRNA synthetase-like 1, isoform CRA_a [Homo sapiens]
 gi|168275836|dbj|BAG10638.1| threonyl-tRNA synthetase [synthetic construct]
          Length = 718

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 145/457 (31%), Gaps = 57/457 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
             +   RD      +  L     H+ S G   +LP G +  + + A IR E    G  E+
Sbjct: 294 REEAELRDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEV 351

Query: 70  SVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKAMIYGPTHEEV 113
             PTL S  LW +SG ++ Y ++M                          +   P +   
Sbjct: 352 KTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPA 411

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              +F    +S+R LP          R E      G+ R R F   DA+ F  T +    
Sbjct: 412 HCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAE 471

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                      ++  LG         + P G                         D   
Sbjct: 472 -IQSCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------LGDPCLWDQAE 512

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                   +      +     A Y    DVH   L D+L    +     ++    F    
Sbjct: 513 QVLKQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPL 565

Query: 293 KYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       +KG  G  +  V +    +G++  +  V+    +  G  WP  ++PF++ +
Sbjct: 566 RFD----LQYKGQAGALERPVLIHRAVLGSVERLLGVLA---ESCGGKWPLWLSPFQVVV 618

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           I + +  +   +  ++    L   G     D D G  +  +   A L  +  Q +VG K 
Sbjct: 619 IPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQFVVGQKE 675

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            S   V I+ R      +  L E +       +   P
Sbjct: 676 QSKRTVNIRTRDNRRLGEWDLPEAVQRLVELQNTRVP 712


>gi|307179779|gb|EFN67969.1| Probable prolyl-tRNA synthetase, mitochondrial [Camponotus
           floridanus]
          Length = 422

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 128/444 (28%), Positives = 214/444 (48%), Gaps = 44/444 (9%)

Query: 3   RSKYFLPILQE-----NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAII 57
            SK F P+  E     +  +    SHKLM++ G+I   + G+Y+ LPLG + L+ +  ++
Sbjct: 1   MSKIFQPMATELSDTGDKTEI-SRSHKLMIKYGIIKPCNVGMYALLPLGMRVLNKLINLV 59

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT-D 116
            +E    GA ++ +P L S  LW ++ RYDS   E+  + DR++K  I  PT+EE +   
Sbjct: 60  DKEMTNLGAEKILLPALTSTSLWKKTNRYDSNKNELFTIKDRHEKEYILSPTYEEAICDL 119

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I  +   S + LP   YQI  K+RDE++PR G +RSREF+MKD Y+FD   + ++++Y+ 
Sbjct: 120 ISSTGSLSTKLLPLRLYQISSKWRDEMKPRLGFLRSREFIMKDLYTFDTNLDNAQYTYDL 179

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +  SY  IF ++G+K   +  + G IGG +SHE+  +++ GE  +               
Sbjct: 180 VCESYNNIFKQIGIKYEKVIGDVGTIGGLISHEYHYISNIGEDVILQCPSC--------- 230

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                              Y + +   ++       +N+       E+GH F    KYS 
Sbjct: 231 -------------------YFSINQTISKTTNCPQCKNELQRHIAAEIGHTFLLNIKYSQ 271

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           P+ A +     +   V MG +G+G  R++   IE       I WP  +AP+ + +I  KA
Sbjct: 272 PLKAMYV-EQNELKPVVMGCFGLGLSRIIMLTIEILSTINEIRWPVKLAPYTVCIIPPKA 330

Query: 357 --HDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGS---KF 410
              ++      E++   L K   D   DD     IG +F +A  LGFP  +I+G    + 
Sbjct: 331 GSKEENSSKYIEQLSEILCKRDIDTVLDDRTHLTIGKRFVLARALGFPYIIIIGKASTRS 390

Query: 411 VSDSKVEIKHRLTGIREDMSLEEV 434
           +     E+      +  ++SLE++
Sbjct: 391 IP--SFEVHDINNSVTNELSLEQI 412


>gi|297379344|gb|ADI34231.1| threonyl-tRNA synthetase [Helicobacter pylori v225d]
          Length = 612

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 150/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRDHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F                + L  
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCS-----FEQIQSEVSAILDF 379

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                         +  I       + +   T   +        +    +      +   
Sbjct: 380 --------------THKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATNALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 EYNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +   A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEALKKRDIFVEVLDKNDSLNKKVRSAEKQKIPMILVLGNEEVGTEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|16553656|dbj|BAB71554.1| unnamed protein product [Homo sapiens]
          Length = 433

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/446 (15%), Positives = 144/446 (32%), Gaps = 38/446 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 16  KMMRDWEKFQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLTDFIREE 73

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y + M       D      P +      +F  
Sbjct: 74  YHKRDFTEVLSPNMYNSKLWEASGHWQHYSENMFTFEIEKDT-FALKPMNCPGHCLMFAH 132

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +S+R +P       +  R+EL      +       +D      T E  +         
Sbjct: 133 RPRSWREMPIRCADFGVLHRNELSGTLSGLTGVRRFQQDDAHIFCTVEQIEEEIKGCLQF 192

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G                    F +   T         +  +           
Sbjct: 193 LQSVYSTFGFS------------------FQLNLSTRPENFLGEIEMWNEAEKQLQNSLM 234

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D      +     A Y    D+   K+ D++    + +   ++    F    +++L   +
Sbjct: 235 DFGEPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYVS 287

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                D K   V +    +G++  + A++    +  G  WP  ++P ++ +I +      
Sbjct: 288 K--DGDDKKRPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP---T 339

Query: 361 CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           C     ++ +   + G     D D    +  +   A L  +   ++VG K   D+ V ++
Sbjct: 340 CEKYALQVSSEFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNVR 399

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R   I  ++ +   I+   +     
Sbjct: 400 TRDNKIHGEILVTSAIDKLKNLRKTR 425


>gi|284925806|gb|ADC28158.1| prolyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni IA3902]
          Length = 569

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 111/271 (40%), Positives = 159/271 (58%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + S+  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MRFTKFYAPSLKEAPKDASLPSYIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 182 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAA--- 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                    E+  A YA+     N K  DSL
Sbjct: 238 KRAKKTCQDERPEANYASKFHTPNIKTIDSL 268



 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 108/223 (48%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 347 DFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKEGDCCVKCGAKLKQS 406

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A   E+SHD KG I
Sbjct: 407 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVATEASHDEKGCI 466

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +    +L+G
Sbjct: 467 WNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLLDDRNERFGVKMNDFELMG 526

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  ++VG K +  +++E+  R   I+E +  +E++     + 
Sbjct: 527 FPYALVVG-KGLEKNEIELIQREGLIKELIKTDELMEILKKKV 568


>gi|149409915|ref|XP_001508543.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 719

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 149/447 (33%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 302 KLLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNTLIEFIRSE 359

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 360 YRKRGFQEVVTPNIYNSKLWLTSGHWQHYSENMFSFEVEKEI-FALKPMNCPGHCLMFDH 418

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 419 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQ-IEEEIKSCLD 477

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E    A+                        
Sbjct: 478 FLKTVYDVFGFSFKLN-LSTRPEKFLGDIEVWNQAEK-----------------QLENSL 519

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     A Y    D+   ++ D++    + +   ++    F    +++L   
Sbjct: 520 IEFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRFNLTFV 572

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ ++ +     
Sbjct: 573 SH--DGDDKKRPVIVHRAILGSVERMIAILT---ENFGGKWPLWLSPRQVMVVPVGP--- 624

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C D  +K+  +          D D G  +  +   A L  +   ++VG K  +   V I
Sbjct: 625 TCDDYAQKVRQQFHDAQLMTDVDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKTSGTVNI 684

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   +  + ++ E I        + 
Sbjct: 685 RTRDNKVHGERTISETIERLQQLKQSR 711


>gi|298491630|ref|YP_003721807.1| threonyl-tRNA synthetase ['Nostoc azollae' 0708]
 gi|298233548|gb|ADI64684.1| threonyl-tRNA synthetase ['Nostoc azollae' 0708]
          Length = 606

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 153/440 (34%), Gaps = 39/440 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L          G+  W P G      +   +++EQ + G + +  
Sbjct: 195 EALRRDHRKLGKELGLFI-FADPVGPGLPLWTPKGTLLRTILEDFLKKEQLKRGYLTVVT 253

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKSY 125
           P +   DL+  SG +  Y +++  L   + +A       +  P +      I++  ++SY
Sbjct: 254 PHIARVDLFKTSGHWQKYKEDIFPLMAEDAEAAAIEQGFVLKPMNCPFHIQIYKGELRSY 313

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R LP    +    +R E     G +        D     +TPE   + +  +    L +F
Sbjct: 314 RELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPEQLDNEFLSVVDLILTVF 373

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             L LK+   R                  D    +     +  D    +       +   
Sbjct: 374 RSLQLKNFKARLS--------------FRDPASDKYIGGDEVWDKSEGAIRRAVQQLGMD 419

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +       A Y    D       D+L    ++    ++                  +   
Sbjct: 420 HFEGIGEAAFYGPKLDFI---FSDALDREWQLGTVQVDYNLP--------ERFDLEYVAE 468

Query: 306 DG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG +   V +     G++  +  ++    +     +P  +AP +I L+ +    +   D 
Sbjct: 469 DGARKRPVMIHRAPFGSLERLIGILI---EEYAGDFPLWLAPVQIRLLPVG---EAQIDF 522

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +++ A++  +G     D  GE++G     A+    P+  +VG K V  + + I+ R +G
Sbjct: 523 TKEVVAKMLALGIRAEVDLSGERLGKLIRNAEKDKIPVMAVVGVKEVETNSLSIRTRASG 582

Query: 425 IREDMSLEEVINYASHRFSN 444
               +S+++V+       +N
Sbjct: 583 ELGVISVDQVVGKIQGAINN 602


>gi|296814972|ref|XP_002847823.1| threonyl-tRNA synthetase [Arthroderma otae CBS 113480]
 gi|238840848|gb|EEQ30510.1| threonyl-tRNA synthetase [Arthroderma otae CBS 113480]
          Length = 739

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/471 (15%), Positives = 136/471 (28%), Gaps = 65/471 (13%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   R+ +    +  L      + S G    LP G K  + +  ++R E  + G  E+
Sbjct: 295 MEEAEKRNHQKIGKEQELF--FFDEVSPGCPFLLPNGTKIFNALQKLLRTEYRKRGYQEV 352

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P +    +W +SG +  Y  +M +L D   +     P +      +F    +SYR LP
Sbjct: 353 QSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMFGHRERSYRELP 411

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                  +  R+E      G+ R R+F   D + F    +  +     +F     I+   
Sbjct: 412 LRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCTDNQIMEE-IEGLFDFLRAIYGLF 470

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G     ++  + P       E    A+    +        D                  I
Sbjct: 471 GFSF-KLKLSTRPEKYLGKLETWDYAEAQLREALTKFKGAD----------------WDI 513

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF------------------ 290
            E   A Y    D+    + D+L    + +   ++      F                  
Sbjct: 514 DEGDGAFYGPKIDI---TISDALKREHQCATIQLDYQLPLNFKLEYMTGETVPKSAAPAD 570

Query: 291 ------GTKYSLPMSATFKGA----DGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGII 339
                     S    A          G+   V +    IG+  R    +IE         
Sbjct: 571 PQAEAKPEDDSKRAQAPTADPAAPGPGRARPVVIHRAIIGSFERFFGILIEHFGGKWPFW 630

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
                      +           D  E++   L     +V  D  G  +  +     L  
Sbjct: 631 LSPRQILIVPVM-------ASANDYVEELQEILRGDKLNVDIDLSGHTMQKKIRNGQLAQ 683

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
           +    +VG++      V I++R     +     + LEE            R
Sbjct: 684 YNFIFVVGAQEKESRSVNIRNRDDPSSQTKGSLVPLEEARAKLRALRKERR 734


>gi|295698321|ref|YP_003602976.1| threonyl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
 gi|291157332|gb|ADD79777.1| threonyl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
          Length = 414

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 153/446 (34%), Gaps = 48/446 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S       +E  +D      +L L      Q+S G   W P G      +   IR + 
Sbjct: 7   KFSN---HTEKE--QDHRSIGRQLELF--YFDQNSPGSVFWNPNGLIIFQELKRYIRLKL 59

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                 E+  P +    LW ++G   +Y K M +++  + +     P +      IF+  
Sbjct: 60  KEYQYQEVKTPEILHKSLWKKTGHLQNYEKYMFKVSSES-RKYCLKPMNCPGHIKIFQQK 118

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           I+SYR+LP    +     R+EL     G+MR REF   DA+ F    +  +    K    
Sbjct: 119 IRSYRDLPLRIAEFGNCHRNELSGSLHGLMRVREFTQDDAHIFCTKEQVFEE-IKKCIGM 177

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++   G K I +R  + P       ++   A++           ++  +  E     
Sbjct: 178 VQEVYKTFGFKKISIRLATRPKQRIGEEKYWDYAES----------ILEKALEKE----- 222

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  ++ +  A Y    +     L D L    +     ++       G         
Sbjct: 223 -----FDLLPENGAFYGPKIEF---TLHDRLEREWQCGTIQLDFLLPIQLG--------V 266

Query: 301 TFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +     K  +  +     +G++     ++   + G    W           + + +  +
Sbjct: 267 FYIDQKNKKQHPMIIHRAILGSIERFIGILIEHYSGYLPTW------LSPIQVVVISVSK 320

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  +KI  R+   G  V+ D   E+I  +     +   P  V+ G K      V I+
Sbjct: 321 KYINFSKKIVQRIKYAGIRVYHDLKNEKINLKIRKHSINKIPYIVLCGEKEEKTGSVSIR 380

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            +L  + + +S+E  I   S   +N 
Sbjct: 381 RKLEKVIKTISIENFIKMVSSEINNY 406


>gi|62897187|dbj|BAD96534.1| threonyl-tRNA synthetase-like 1 variant [Homo sapiens]
          Length = 718

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 84/457 (18%), Positives = 143/457 (31%), Gaps = 57/457 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
             +   RD      +  L     H+ S G   +LP G +  + + A IR E    G  E+
Sbjct: 294 REEAELRDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEV 351

Query: 70  SVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKAMIYGPTHEEV 113
             PTL S  LW +SG ++ Y ++M                          +   P +   
Sbjct: 352 KTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPA 411

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              +F    +S+R LP          R E      G+ R R F   DA+ F  T +    
Sbjct: 412 HCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAE 471

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                      ++  LG         + P G                         D   
Sbjct: 472 -IQSCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------LGDPCLWDQAE 512

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                   +      +     A Y    DVH   L D+L    +     ++    F    
Sbjct: 513 QVLKQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPL 565

Query: 293 KYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       +KG  G       +    +G++  +  V+    +  G  WP  ++PF++ +
Sbjct: 566 RFD----LQYKGQAGALGRPVLIHRAVLGSVERLLGVLA---ESCGGKWPLWLSPFQVVV 618

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           I + +  +   +  ++    L   G     D D G  +  +   A L  +  Q +VG K 
Sbjct: 619 IPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQFVVGQKE 675

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            S   V I+ R      +  L E +       +   P
Sbjct: 676 QSKRTVNIRTRDNRRLGEWDLPEAVQRLVELQNTRVP 712


>gi|78776267|ref|YP_392582.1| threonyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
 gi|78496807|gb|ABB43347.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Sulfurimonas
           denitrificans DSM 1251]
          Length = 602

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/444 (14%), Positives = 151/444 (34%), Gaps = 40/444 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              Y   + +   RD      ++ + T    +   G   WLP G +    + +++ +   
Sbjct: 194 LKSYLDMMAEAEKRDHRKLGAEMKMFT-FREEVGAGFPIWLPAGGRLRARLESLLFKAHR 252

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G   +  P +  +DLW  SG Y +YG+ M    + ++      P +      I+   +
Sbjct: 253 KRGYEPVRGPEMLRSDLWKTSGHYQNYGENM-YFTNIDEIEFGVKPMNCVGHIKIYEEDL 311

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+LP  +++  +  R E+     G+ R REF   DA+ F    +  +    ++    
Sbjct: 312 HSYRDLPLKYFEYGVVHRHEMTGALHGLFRVREFTQDDAHIFCRADQI-EEQIIEVVDFV 370

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +I                            +  T   +        +    +     D 
Sbjct: 371 DKIMSTFEFNYKM------------------MLSTKPAKAVGDDSVWEVSTQALKNAMDK 412

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
              +  I E   A Y    D+   K+ D++    +     ++    F   +++       
Sbjct: 413 NGLVYEIDEGGGAFYGPKIDI---KITDAIGREWQCGTIQLD----FNLPSRF----ELE 461

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G +        +    +G+      ++   +        +       + + I      
Sbjct: 462 YNGENNDKIQPVMIHRAILGSFERFIGILTEHY------AGEFPMFIAPTQVAIVPIAPT 515

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +++  +L  +G D       + +  +   A+    P+ V++G + V+   V I+ 
Sbjct: 516 HNDYAKELSDKLMDLGADSEIYSKNDSLNKRVRTAEKTRVPMLVVIGDEEVASRTVAIRD 575

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R T  + ++S  E ++    + + 
Sbjct: 576 RRTREQYNLSESEFLSLIQTKINE 599


>gi|152967010|ref|YP_001362794.1| threonyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
 gi|151361527|gb|ABS04530.1| threonyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
          Length = 656

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 64/422 (15%), Positives = 125/422 (29%), Gaps = 36/422 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +   +R      G   +  
Sbjct: 252 EAERRDHRRLGAELDLFS-FPDEIGSGLVVFHPKGGVVKREMEDYVRRRHIEEGFSYVGT 310

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +    L+  SG    Y   M    +  +        +  +   IFRS  +SYR LP  
Sbjct: 311 PHISKGGLFETSGHLPYYEDTMFPGMELENSKYYLKAMNCPMHNLIFRSRGRSYRELPLR 370

Query: 132 FYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           F++    +R E      G+ R R     D++S+    +        +    L +    GL
Sbjct: 371 FFEFGSVYRYEKSGVVHGLTRVRGLTQDDSHSYVTQEQAPGE-IKHLLDFVLGLLKDFGL 429

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +   +                        S +          T   +         
Sbjct: 430 DDYYLELSTRGDSEKF---------------IGSDEEWARATEVLETAARETGLDLVADP 474

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y       + +  D++    ++S    +      F           +  ADG   
Sbjct: 475 GGAAFYGPKI---SVQAKDAIGRTWQMSTIQYDFNQPARF--------ELEYTAADGTKQ 523

Query: 311 YV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               + S   G++     V+    +     +P  +AP ++  I +           + + 
Sbjct: 524 RPVMIHSAKFGSLERFFGVLV---EHYAGAFPPWLAPVQVVGIPVA---DAHVPHLQDVA 577

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A L   G  V  DD  +++  +         P  +I G++ V +  V  + R       +
Sbjct: 578 AALRAAGVRVEVDDTDDRMPKKIRTWTKQKIPFLLIAGAEDVENGAVSFRFRDGSQENGV 637

Query: 430 SL 431
            +
Sbjct: 638 PV 639


>gi|308805643|ref|XP_003080133.1| putative threonyl-tRNA synthetase (ISS) [Ostreococcus tauri]
 gi|116058593|emb|CAL54300.1| putative threonyl-tRNA synthetase (ISS) [Ostreococcus tauri]
          Length = 625

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/438 (15%), Positives = 146/438 (33%), Gaps = 39/438 (8%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +    +E  R D       L L +        G+  W P G +    +    ++    
Sbjct: 214 KAYTEFKEEAKRRDHRTIGKDLNLFSLQQDSAGGGLVFWHPKGAQMRHMIETYWKDLHLA 273

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +   +LW  SG  D Y + M +     ++     P +      +++    
Sbjct: 274 RGYELLYSPHVARQELWQTSGHSDFYSENMYQPIKVEEEMYQLKPMNCPFHIVVYQDGYY 333

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP  + ++   +R E      G+ R R F   DA+ F L  + +     ++     
Sbjct: 334 SYKDLPIRWAELGTVYRYERSGTMHGLFRVRGFTQDDAHIFCLPDQITSE-IKRVLDLTE 392

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I    G     +   + P                                +      + 
Sbjct: 393 EILSTFGFTDFEVNLSTRPEKS-----------------VGEDAIWTTAENALRDALGEK 435

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                + +   A Y    D+   K+ D++    + S   ++    F    ++       +
Sbjct: 436 GWDYIVDDGGGAFYGPKIDI---KILDAIGRKWQCSTVQLD----FNLPERFD----LNY 484

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              D        +     G++     ++    +     +P  +AP ++ L+ +       
Sbjct: 485 IDRDNNKQRPIMIHRAIFGSLERFFGILT---ENYAGEFPLWLAPVQVRLLPVT---DEV 538

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  E + A+L + GC V     G+++      A+    P+  +VG    +++ + ++  
Sbjct: 539 SDYTEGVAAKLREAGCRVEI-CTGQRLAKLVRTAEKAKIPVMAVVGRDEAANNTLAVRTY 597

Query: 422 LTGIREDMSLEEVINYAS 439
             G    +S++EV++  +
Sbjct: 598 KDGDVGSLSVDEVLSRIT 615


>gi|332024431|gb|EGI64629.1| Putative prolyl-tRNA synthetase, mitochondrial [Acromyrmex
           echinatior]
          Length = 437

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 133/436 (30%), Positives = 205/436 (47%), Gaps = 43/436 (9%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
              D    SHKLM+  G+I   S G+Y+ LPLG + L+ +  I+ +E    GA ++ +P 
Sbjct: 27  EKTDITSKSHKLMINYGIIKPLSIGMYALLPLGMRILNKLIDIVDKEMMNIGAQKILLPA 86

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR---NLPF 130
           L  A LW ++ RYDS   E+  L DR+ K  I  PTHEE + D+      +      LP 
Sbjct: 87  LTPAALWKKTDRYDSNKTELFTLTDRHKKEYILSPTHEEAICDLISLAGPTVPISKLLPL 146

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             YQI  K+RDE++PR G +RSREF+MKD Y+FD + + ++H+Y+ +  SY  IF ++G+
Sbjct: 147 KLYQISSKWRDEMKPRLGFLRSREFIMKDLYTFDSSLDNARHTYDLVCESYNNIFRQIGI 206

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           K      + G IGG +SHE+  ++D GE  +                             
Sbjct: 207 KYTKSIGDVGTIGGLMSHEYHYVSDIGEDTIL---------------------------- 238

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
               P    S   +     S PE K    S    EVGH F   TKYS P+   F     K
Sbjct: 239 --QCPSCHFSINQSISKTTSCPECKNELHSYTAAEVGHTFLLDTKYSRPLEVMFFMEQNK 296

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACE 366
              + MG +G+G  R++  V+E       + WP  +AP+ + +I  KA   ++      E
Sbjct: 297 PTPMVMGCFGLGLSRIITLVVEILSINDEMRWPVKLAPYTVCIIPPKAGSKEESTSAYIE 356

Query: 367 KIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV---EIKHRL 422
           +++    K   D   DD     IG +   A LLG+P  +++G    +   +   EI    
Sbjct: 357 QLFEIFYKRNIDTILDDRTHYTIGKRLVFARLLGYPYIIVIGK--AATQSIPLFEIHDVN 414

Query: 423 TGIREDMSLEEVINYA 438
                ++SL+++ +Y 
Sbjct: 415 NSTYHELSLDQMNDYF 430


>gi|291516871|emb|CBK70487.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Bifidobacterium
           longum subsp. longum F8]
          Length = 677

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 59/461 (12%), Positives = 128/461 (27%), Gaps = 54/461 (11%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHCK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEKDADGNITKPGADYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 420

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 421 DEL-TSLLTFVLNLLKDFGLTDFYLELST----------------KDPNKYVGSDEIWEE 463

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +      +            A Y       + +  D++    +VS   ++    F  
Sbjct: 464 ATNTLAEVAKESNLELVDDPCGAAFYGPKI---SVQARDAIGRTWQVSTIQLD----FNL 516

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             ++       +   DG           +   R +   IE         +  +   +   
Sbjct: 517 PERF----QLEYIAKDGT------HQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAP 566

Query: 351 LINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  +     V  +    +      L         D   ++ G +   A     P  +IVG
Sbjct: 567 VQVLGV--PVADEFAPHLAGFVKSLEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVG 624

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            + ++++ V  + R       + ++               V
Sbjct: 625 EEDMNNNAVSFRFRDGSQLNGVPVDTAREQILTVIKKRVQV 665


>gi|227432324|ref|ZP_03914317.1| prolyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351930|gb|EEJ42163.1| prolyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 572

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 103/235 (43%), Positives = 148/235 (62%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L++ P +AE+ SH+L+L+ G I   + G++S+LPL ++ L+ +  IIREE
Sbjct: 1   MKQSKLLMPTLRDIPAEAEVKSHQLLLKAGYIRPIAAGMFSYLPLAKRVLNKIETIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++  A EM VP +  A+LW  SGRY++YG  + +  +R D+  I GPTHEE  T +   
Sbjct: 61  MDKIDANEMLVPEVLPAELWQRSGRYETYGPALYKFKNRQDRDFILGPTHEETFTQLIAD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP T YQIQ KFRDE RPRFG++R+REF+MKDAYSF    EG   +++ M  +
Sbjct: 121 EIKSYKKLPLTVYQIQAKFRDENRPRFGLLRTREFIMKDAYSFSADQEGLDEAFHNMEEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF RLGL+   +  ++G +GG  S EF   A  GE  +  S    D+    E
Sbjct: 181 YTNIFDRLGLEYRAIVGDAGAMGGSDSKEFSAPAAAGEDTIAYSD-ATDYAANLE 234



 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 89/158 (56%), Gaps = 1/158 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            + K     GIE+GHIF  GT+YS  + A     +G+   V MGSYGIG  R+++A+ E 
Sbjct: 398 GKGKLQFTSGIEIGHIFKLGTRYSKTLGAQVLDNNGRQTDVIMGSYGIGVSRLLSAIAEQ 457

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++WP SVAPF+I ++ I   D+      E++   L   G +V  DD  E+ G +
Sbjct: 458 KADEDGLVWPASVAPFEIHIVPINMKDEDQARVAEQLETLLVAQGMEVLVDDRKERAGVK 517

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           FA ADL+G P+++ VG K   +  VE+K R +    +M
Sbjct: 518 FADADLIGLPIRITVGKK-ADEDVVEVKVRASNTNIEM 554


>gi|226366266|ref|YP_002784049.1| threonyl-tRNA synthetase [Rhodococcus opacus B4]
 gi|254783533|sp|C1B4B5|SYT_RHOOB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226244756|dbj|BAH55104.1| threonyl-tRNA synthetase [Rhodococcus opacus B4]
          Length = 685

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 62/444 (13%), Positives = 128/444 (28%), Gaps = 47/444 (10%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R+     G   ++ 
Sbjct: 257 EAERRDHRKLGSELDLFS-FPDELGSGLPVFHPRGGIIRTEMEDYSRKRHVEEGYEFVNT 315

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDIFR 119
           P +    L+  SG  D Y   M                 +  +     P +  +   IFR
Sbjct: 316 PHITKGHLYEVSGHLDWYRDGMFPAMHIDEELNEDGTVRKPGQDYYLKPMNCPMHNLIFR 375

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP   ++    +R E      G+ R R     DA+ +    +          
Sbjct: 376 SRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYCTREQMRDEL-ATTL 434

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    GL    +   +                    +        +    +    
Sbjct: 435 QFVLGLLKDYGLDDFYLELST----------------KNPDKFVGDDAVWEEATATLAEV 478

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +             A Y       + ++ D+L    ++S   ++    F    ++ L  
Sbjct: 479 AESSGLNLVPDPGGAAFYGPKI---SVQVQDALGRTWQMSTIQLD----FNLPERFDLEY 531

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +A+      K   V +     G++     V+   + G    W   V    I +       
Sbjct: 532 TAS---DGTKKRPVMIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPVA------ 582

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D    +  RL   G     D   +++  +         P  ++ G++ V    V  
Sbjct: 583 ETFADHLFDVVKRLKAAGVRAEVDASDDRMQKKIFNNTAQKVPFMLLAGARDVEAGAVSF 642

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R       + +++ +   +   
Sbjct: 643 RFRDGTQVNGVPVDDAVRIVTDWI 666


>gi|161507687|ref|YP_001577641.1| prolyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
 gi|172048310|sp|A8YVR3|SYP_LACH4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160348676|gb|ABX27350.1| Prolyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
          Length = 565

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 106/265 (40%), Positives = 145/265 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L     II +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEGIIEDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MEKINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGTYAANLEMAKSID 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                    ++ T       D   +
Sbjct: 241 TFKQEPEDAKELTKVATPGCDTIEK 265



 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +           NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFVDIRTANEGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAK 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++A +E      G+ WP  +APF I ++ +K + +   +  EK+  
Sbjct: 435 PVIMGSYGIGVTRMLSAAVEQHLTEHGVAWPKEIAPFAIHIVQMKMNKEDQTELAEKLEK 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           + S+   DV +DD  E+ G +FA ADL+G P+++ VG K  +D  VE+K        ++S
Sbjct: 495 KFSEK-YDVLYDDRKERAGVKFADADLVGAPIRITVGKK-AADGIVEVKRPTDDKATEIS 552

Query: 431 LEEVINYASHRF 442
           ++E+  + +   
Sbjct: 553 IDELDKFVNQEL 564


>gi|145534943|ref|XP_001453210.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420921|emb|CAK85813.1| unnamed protein product [Paramecium tetraurelia]
          Length = 609

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 152/442 (34%), Gaps = 48/442 (10%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK +    ++   D      +  L     ++ + G   +LP G K  + +  +IR+E   
Sbjct: 212 SKLYQDYQKQMECDHRHIGKQNHLFV--FNKLAPGSAFFLPHGTKIYNKLVEMIRKEYRE 269

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L   DLW +SG  D Y + +      +D  M   P +      ++++   
Sbjct: 270 RGYQEVITPQLFHKDLWKQSGHLDKYAENIYMT---HDHQMGLKPMNCPGHCLLYKTLQH 326

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY+ LP  F    +  R+E+     G+ R R+F   DA+ F    +  +           
Sbjct: 327 SYKELPIRFADFGVLHRNEVHGTLTGLTRVRKFTQDDAHIFCTIEQIQQE-IKNTLDFLS 385

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +++ R G     +   + P                  +        D           D 
Sbjct: 386 KVYGRFGFT-WELTLSTRP-----------------DKYIGDLQIWDEAERQLRIALSD- 426

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
            +  +      A Y    DV            +  + +  + G I             T+
Sbjct: 427 -TPYTENPGDGAFYGPKIDVLI----------RDHNQKQHQCGTI-QLDFNLPERFDLTY 474

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHD-GKGIIWPDSVAPFKISLINIKAHDQV 360
              + K    V +    +G++  + A++   ++                         +V
Sbjct: 475 HHENDKFSRPVMIHRAILGSIERMMAILTEQYNGRWPFWLSPRQVLIIPV-------SEV 527

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +   ++IY +L K+G +V  +D  + +G +    ++L F   + +G+K    + V+++ 
Sbjct: 528 SKQYAKEIYDQLYKLGFEVELEDSEQTLGKRIRKGEMLHFNYILTLGAKEQESNTVDVRE 587

Query: 421 RLTGIR-EDMSLEEVINYASHR 441
           R    + + M L+E I      
Sbjct: 588 RGDNHKHQSMKLDEFITKIIQL 609


>gi|219681610|ref|YP_002467996.1| prolyl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219682167|ref|YP_002468551.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471296|ref|ZP_05635295.1| prolyl-tRNA synthetase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|254782890|sp|B8D937|SYP_BUCA5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782891|sp|B8D7E1|SYP_BUCAT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219621900|gb|ACL30056.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624453|gb|ACL30608.1| prolyl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|311086555|gb|ADP66636.1| prolyl-tRNA synthetase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087136|gb|ADP67216.1| prolyl-tRNA synthetase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087672|gb|ADP67751.1| prolyl-tRNA synthetase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 572

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 114/292 (39%), Positives = 168/292 (57%), Gaps = 7/292 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+Y L   ++ P DA+I SH+LM+R+GMI + S G+Y WLP G + L  +  II  E
Sbjct: 1   MLTSQYLLSTSKDIPYDAKIISHQLMIRSGMIRKTSSGLYVWLPTGMRVLKKIKNIITTE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+E+ +P +Q   LW ESGR + YG+E+LR  DR     I GPT+EEV+T+   S
Sbjct: 61  MEKINALEILMPIIQPEYLWKESGRLNLYGEELLRFLDRRKNQFILGPTNEEVVTNFIGS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQIQ KFRDE+RPRFG++R+REF MKDAYSF +     +++YNK + S
Sbjct: 121 EIHSYKQLPLTVYQIQTKFRDEIRPRFGIIRTREFTMKDAYSFHINQSCLENTYNKFYDS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-----SKDFMDFPIPSE 235
           Y+ IF ++ L    ++A+SG +GG++SHEF   +  GE ++           M+     E
Sbjct: 181 YINIFKKMNLNFCAVKADSGSMGGNISHEFQAFSQNGEDEIVFSNDKLYSSNMNMAESIE 240

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
             DF      + +++  T      S + +EKL   L    +      ++  I
Sbjct: 241 TIDFFKKKYSSCLIKNKTN--TKKSIIMSEKLNTPLINQIQTFLIQTKINDI 290



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARG--IEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+      D  P           IE+GHIF  G KYS  +  + K  +G    +
Sbjct: 380 PMPIFKDIRKVTKNDLSPNGSGYLNIKQSIEIGHIFQLGQKYSRKIQQSVKIKNGNLKNL 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R+ AAVIE  HD  GIIWPDS+APF++ ++ I    D   +     +Y +
Sbjct: 440 YMGCYGIGITRIAAAVIEQHHDKNGIIWPDSIAPFEVVILPINMKKDNKIKIIAHFLYKK 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             K G DV  DD  E+ G  F   DL+G P Q+I+  + ++   VE + R       +++
Sbjct: 500 FKKTGIDVILDDRDERPGVMFNEVDLIGIPHQIIISKRSINYDNVEYRERKNKENILINI 559

Query: 432 EEVINYASHRFSN 444
           +++ N+   +   
Sbjct: 560 KDIKNFIIQKLKK 572


>gi|33863527|ref|NP_895087.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313]
 gi|81834835|sp|Q7TUU4|SYP_PROMM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33640976|emb|CAE21434.1| tRNA synthetases, class-II (G, H, P and S):Prolyl-tRNA synthetase
           [Prochlorococcus marinus str. MIT 9313]
          Length = 599

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 112/240 (46%), Positives = 150/240 (62%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEIASH+L+LR G I + + GIY++LPL  + L  + +I++EE
Sbjct: 1   MRVSRLMLVTLRDIPADAEIASHQLLLRGGYIRRVTSGIYAYLPLMWRVLRKITSIVQEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA+E  +P LQ A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  MDATGALETLLPQLQPAELWRRSGRWQGYTAGEGLMFHLEDRQGRELGLGPTHEEVITSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF         +Y  M
Sbjct: 121 AGDLLRSYRQLPVTLYQIQSKFRDEIRPRFGLMRGREFIMKDAYSFHSCEADLAMTYRAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y RIF R GL+++ + A+SG IGG  S EF+V AD GE  +  S D   +    E  
Sbjct: 181 DEAYQRIFSRCGLETVAVEADSGAIGGASSQEFMVTADAGEDLILISGDGH-YAANQEKA 239



 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 4/190 (2%)

Query: 260 SDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            D+   +  D    +        RGIEVGHIF  G KYS  + A F    G      MG 
Sbjct: 407 VDLRKSQAGDRCIHDSSQILEERRGIEVGHIFQLGRKYSEALEACFTNDQGTQEPFWMGC 466

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+  A +E  HD  G+ WP ++APF++ ++     D+V +   E++Y+ L    
Sbjct: 467 YGIGISRLAQAAVEQHHDEAGMKWPLAIAPFEVIIVVANIQDEVQQKLAEQLYSELQAAD 526

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +   DD  E+ G +F  ADL+G P +V+VG +  +  +VE+  R +   + +S ++   
Sbjct: 527 IEALLDDRTERAGVKFKDADLIGIPWRVVVG-RDAAKGQVELIQRSSRKVQILSAKQAFT 585

Query: 437 YASHRFSNNR 446
                 + N+
Sbjct: 586 ALVKDIAANQ 595


>gi|323466334|gb|ADX70021.1| Proline-tRNA ligase [Lactobacillus helveticus H10]
          Length = 565

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 106/265 (40%), Positives = 145/265 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L     II +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEGIIEDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MEKINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGTYAANLEMAKSID 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                    ++ T       D   +
Sbjct: 241 TFKQEPEDAKELTKVATPGCDTIEK 265



 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +           NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFVDIRTANEGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAK 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++A +E      G+ WP  +APF I ++ +K + +   +  EK+  
Sbjct: 435 PVIMGSYGIGVTRMLSAAVEQHLTEHGVAWPKEIAPFAIHIVQMKMNKEDQTELAEKLEK 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           + S+   DV +DD  E+ G +FA ADL+G P+++ VG K  +D  VE+K        +MS
Sbjct: 495 KFSEK-YDVLYDDRKERAGVKFADADLVGAPIRITVGKK-AADGIVEVKRPTDDKATEMS 552

Query: 431 LEEVINYASHRF 442
           ++E+  + +   
Sbjct: 553 IDELDKFVNQEL 564


>gi|134098578|ref|YP_001104239.1| threonyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|291008224|ref|ZP_06566197.1| threonyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|133911201|emb|CAM01314.1| threonyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
          Length = 674

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 61/448 (13%), Positives = 121/448 (27%), Gaps = 49/448 (10%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R    + G   +  
Sbjct: 247 EAERRDHRRLGSELDLFS-FPDEIGSGLPVFHPKGGIIRKEMEDYSRRRHEQAGYEFVYS 305

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDIFR 119
           P +    L+  SG    Y   M                 +  +     P +      I+R
Sbjct: 306 PHITKDALFKTSGHLSWYKDGMFPAMHLDEERDEDGEVRKPGQDYYLKPMNCPFHNLIYR 365

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP   ++    +R E      G+ R R     DA+ +    +        + 
Sbjct: 366 SRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYCTPEQLQDEL-KSLL 424

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    GL    +   +                  E +     +       +    
Sbjct: 425 NFVLNLLRDFGLDDFYLELSTR----------------NEEKYVGDDESWRVATEALREA 468

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +             A Y       + +  D+L    ++S   ++      F        
Sbjct: 469 AESSGLELVPDPGGAAFYGPKI---SVQAKDALGRTWQMSTIQVDYHLPDRF-------- 517

Query: 299 SATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +  +DG             G++     V+   + G    W   V    I +      
Sbjct: 518 ELEYTSSDGSRQRPIKIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPIA----- 572

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +++   L   G  V  D   +++  +         P  ++ G K V    V 
Sbjct: 573 -DEHLDHLDRVAKALRAKGIRVEVDASDDRMQKKIRNHTTQKVPFLLLAGGKDVEADAVS 631

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            + R       + ++  +   +H     
Sbjct: 632 FRFRDGTQINGVPVDTAVAALAHWVERR 659


>gi|163839404|ref|YP_001623809.1| prolyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
 gi|162952880|gb|ABY22395.1| prolyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
          Length = 619

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 105/274 (38%), Positives = 147/274 (53%), Gaps = 2/274 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DAEIASHKLM+R G I + + GIYSWLPLG + L  V AIIREE 
Sbjct: 17  RLSTLFLRTLREDPVDAEIASHKLMVRAGYIRRAAPGIYSWLPLGLRVLGKVEAIIREEM 76

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G+ E+  P L   + +  + R+  YG  + RL DR     +  PTHEE+ T + +  
Sbjct: 77  AAIGSQEVHFPALLPCEPYEATNRWTEYGDGIFRLKDRKGNDYLLAPTHEEMFTLLVKDL 136

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP + +QIQ K+RDE RPR G+MR REF+MKD+YSFD+   G   SY     +Y
Sbjct: 137 YGSYKDLPVSLFQIQNKYRDEARPRAGLMRGREFIMKDSYSFDIDDAGLDISYEAHRAAY 196

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +IF RL L+ + ++A +G +GG  S EF+     GE     S       + + +T    
Sbjct: 197 FKIFERLSLEVVAVKATAGAMGGSKSEEFLHPTPVGEDTYVRSAGGYAANVEAVSTVVPA 256

Query: 242 IISLNSIVEQWTA--PYAATSDVHNEKLFDSLPE 273
            I    + +      P   T +         +P 
Sbjct: 257 DIDFADLADAMVHDTPNTPTIETLVAAANSMVPR 290



 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 3/171 (1%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                  ARGIE GH+F  G KY+          +GK   V MGSYG+G  R VAA+ E 
Sbjct: 446 GSGPLEIARGIETGHVFQLGRKYAEIFDLKVLDQNGKQVVVTMGSYGVGVTRAVAAIAEG 505

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
           ++D +G++WP +VAP  + ++ +   D    +  EK+ A L   G DV  DD      G 
Sbjct: 506 NNDDRGLVWPIAVAPADVHVVAVG-RDSEVFETAEKLAADLEAAGLDVILDDRQKVSPGV 564

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +F  A+L+G P+ + VG + + D  VE+K+R TG   ++ + + +      
Sbjct: 565 KFGDAELIGVPMVLAVG-RGLVDGVVELKNRRTGEPNNVPVADTVAEVLAL 614


>gi|332686700|ref|YP_004456474.1| prolyl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
 gi|332370709|dbj|BAK21665.1| prolyl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
          Length = 574

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 104/235 (44%), Positives = 149/235 (63%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK F+P L+E P DAE+ SH+++LR G I Q + G+Y++LPL  + ++N+  I+REE
Sbjct: 1   MRQSKMFIPTLREIPNDAEVLSHQILLRGGYIRQIAAGVYAYLPLANRIIENLKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  AIEM +P +  A+LW +SGRY +YG ++ RL DRN++  I GPTHEE   ++  +
Sbjct: 61  FEKIDAIEMLLPAILPAELWEKSGRYQTYGPDLYRLKDRNERQYILGPTHEETFVELIGN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE RPRFG++R REF+MKD YSF  T E    +YN    +
Sbjct: 121 DVNSYKRLPLNLYQIQSKYRDEKRPRFGLLRGREFIMKDGYSFHATEESLDTTYNDYEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF R GL    +  + G +GG  S EF+ ++D GE  + C     D+    E
Sbjct: 181 YSAIFKRCGLVFRSIIGDGGAMGGKDSKEFMAISDIGEDTI-CFSTEGDYAANLE 234



 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 4/230 (1%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             E +++      +        +      +N   E+   P +   D+   +  D  P+  
Sbjct: 339 PDEVKIYADLHIQNLANTITGANQTGYHLVNVNPERDFVPIS-YEDLRLVQEGDPSPDGN 397

Query: 276 RV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            V    +GIE+GHIF  GT+YS  M+AT    +GK+ Y+ MGSYGIG  R+ AA+ E + 
Sbjct: 398 GVLSFTKGIEIGHIFKLGTRYSESMNATILDENGKEQYIIMGSYGIGVSRLFAAIAEQNA 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D KG+ WP  +APF I ++ +   D       E+I   +   G +V  DD  E+ G +FA
Sbjct: 458 DDKGVNWPIGIAPFDIHVVQMNMKDDEQTQLSEEIEELMISAGYEVLVDDRNERAGVKFA 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL+G P+++ VG K + D  VEIK + TG   ++  EE+ +  +    
Sbjct: 518 EADLIGCPIRITVGKKAIDD-IVEIKIKRTGEMLEVKKEELKSTLAILLK 566


>gi|260101368|ref|ZP_05751605.1| proline-tRNA ligase [Lactobacillus helveticus DSM 20075]
 gi|260084820|gb|EEW68940.1| proline-tRNA ligase [Lactobacillus helveticus DSM 20075]
 gi|328465729|gb|EGF36933.1| prolyl-tRNA synthetase [Lactobacillus helveticus MTCC 5463]
          Length = 565

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 106/265 (40%), Positives = 145/265 (54%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L     II +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAEGIIEDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MEKINVPEMIMPHLLPATLWQESGRYKKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T +     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATRDQLDEQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGTYAANLEMAKSID 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNE 265
                    ++ T       D   +
Sbjct: 241 TFKQEPEDAKELTKVATPGCDTIEK 265



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +           NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFVDIRTANEGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAK 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++A +E      G+ WP  +APF I ++ +K + +   +  EK+  
Sbjct: 435 PVIMGSYGIGVTRMLSAAVEQHLTEHGVAWPKEIAPFAIHIVQMKMNKEDQTELAEKLEK 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           + S+   DV +DD  E+ G +FA ADL+G P+++ VG K  +D  VE+K  +     +MS
Sbjct: 495 KFSEK-YDVLYDDRKERAGVKFADADLVGAPIRITVGKK-AADGIVEVKRPIDDKATEMS 552

Query: 431 LEEVINYASHRF 442
           ++E+  + +   
Sbjct: 553 IDELDKFVNQEL 564


>gi|217967413|ref|YP_002352919.1| threonyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
 gi|217336512|gb|ACK42305.1| threonyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
          Length = 638

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/438 (16%), Positives = 136/438 (31%), Gaps = 38/438 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
             +   RD      +L +      +   G+  + P G      +    R+E  + G   +
Sbjct: 231 REEAQRRDHRKLGRELEIFNTF-EEAGPGLIFYPPKGAMLRLIIEEFERKEHLKRGYFPV 289

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P L  A+LW  SG +D+Y + M  L    DK     P +      I+ S ++SYR+LP
Sbjct: 290 ITPHLMQAELWKRSGHWDNYRENMFFLQ-VEDKDYAVKPMNCPGHILIYNSKVRSYRDLP 348

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F+++   +R E     +G+ R+R F   DA+ F    +        +      +    
Sbjct: 349 LRFFEMGTVYRYERSGVLYGLERARGFTQDDAHIFCTQEQLEDE-IKGVLDFVFYMLDSF 407

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           GL                  E++V   T   +   S +  +    +     +       I
Sbjct: 408 GL-----------------KEYVVTLSTKPEKYIGSDEIWEKATQALKNALESTGIEYRI 450

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    DV  + L   L +  +     ++    F    ++ L   A       +
Sbjct: 451 AEGEGAFYGPKIDVGLKGL---LGKMWQGPTIQVD----FNLPERFDLTYDA--PDGTKR 501

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              +   +      R +  ++E       +                    +   +  E +
Sbjct: 502 RPVMIHRAILGSYERFIGILVEHYGGRFPLWLAPEQVRILPI-------SERHNEYAEYV 554

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L         D    ++  +   A     P   IVG K   ++KV ++         
Sbjct: 555 LRNLRNNDIRAEIDKDQAKLNYKLRKAIAEKVPYIFIVGDKEKEENKVSVRVH-NKDLGM 613

Query: 429 MSLEEVINYASHRFSNNR 446
             L  V+        + +
Sbjct: 614 FDLAYVVTKLLEEIRSKK 631


>gi|332251678|ref|XP_003274973.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic isoform 3
           [Nomascus leucogenys]
          Length = 619

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 148/449 (32%), Gaps = 44/449 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +  + +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 202 KMLKEWEKLQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 259

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y   M       +      P +      +F  
Sbjct: 260 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSDNMFSFEVEKEL-FALKPMNCPGHCLMFDH 318

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 319 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 377

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 378 FLRTVYSIFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 419

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 420 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 468

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 469 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 524

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K      V
Sbjct: 525 --TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTV 582

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I+ R   +  + ++ E I        + 
Sbjct: 583 NIRTRDNKVHGERTISETIERLQQLKQSR 611


>gi|188526926|ref|YP_001909613.1| threonyl-tRNA synthetase [Helicobacter pylori Shi470]
 gi|238691884|sp|B2URV1|SYT_HELPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188143166|gb|ACD47583.1| threonyl-tRNA synthetase [Helicobacter pylori Shi470]
          Length = 612

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 151/441 (34%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   R+      +L L +    +   G+  WLP G +    +  ++ +     G
Sbjct: 207 YLFQIEEAKKRNHRKLGVELGLFS-FDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRG 265

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  +D+W  SG YD+Y + M      +++     P +      +++S + SY
Sbjct: 266 YEPVKGPEILKSDVWKISGHYDNYKENM-YFTTIDEQEYGIKPMNCVGHIKVYQSALHSY 324

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  FY+  +  R E      G++R REF   DA+ F                + L  
Sbjct: 325 RDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCS-----FEQIQSEVSAILDF 379

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                         +  I       + +   T   +        +    +      +   
Sbjct: 380 --------------THKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATNALKEALKEHRI 425

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D+L    +     +++                 F  
Sbjct: 426 DYKIDEGGGAFYGPKIDI---KITDALKRKWQCGTIQVDMNLP--------ERFKLAFTN 474

Query: 305 ADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                +  V +    +G+     A++     G    +   VAP +I+LI I    +    
Sbjct: 475 EHNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN---EEHHV 528

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              K+   L K    V   D  + +  +  +A+    P+ +++G++ V    + I+ R  
Sbjct: 529 FALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREK 588

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  M L+E +N    +   
Sbjct: 589 QAQYKMPLKEFLNMVESKMQE 609


>gi|119383706|ref|YP_914762.1| threonyl-tRNA synthetase [Paracoccus denitrificans PD1222]
 gi|166225473|sp|A1B0M2|SYT_PARDP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119373473|gb|ABL69066.1| Ser-tRNA(Thr) hydrolase [Paracoccus denitrificans PD1222]
          Length = 648

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 148/445 (33%), Gaps = 45/445 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +L+E   RD      ++ L      + + G+  W P G      + A +R    R
Sbjct: 234 KAHLTMLEEAAKRDHRKLGREMELF--HFQEEAPGMVFWHPNGWSIYRELEAYMRRRLIR 291

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIF 118
               E+  P +    LW +SG +++Y + M  +       +  +     P +      ++
Sbjct: 292 ADYKEIKTPQVVDRILWEKSGHWEAYRENMFIVEVDEEGAKEKRINALKPMNCPCHVQVY 351

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +KSYR+LP    +     R E      G+MR R F+  DA+ F  T +  +      
Sbjct: 352 NQGLKSYRDLPLRLAEFGSCHRYEPSGSMHGLMRVRGFVQDDAHIFC-TEDQIEAECAGF 410

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                 ++  LG +   ++  + P     S E                   D    +   
Sbjct: 411 IGLLSSVYKDLGFEKFDIKLSTRPDVRVGSDE-----------------IWDKAEAALKG 453

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             + +     +     A Y    D    KL D++    +      +    F    +    
Sbjct: 454 AIEHLDLPYEVNPGDGAFYGPKLDF---KLTDAIGREWQCGTFQCD----FNLPQR---- 502

Query: 298 MSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + A + G DG K   V +    +G+      ++  ++ GK  +W         S++    
Sbjct: 503 LEAEYVGEDGAKHMPVMLHRAVLGSFERFIGILIENYSGKLPLWLAPRQVVVASIV---- 558

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D   ++ A L   G     D   E+I  +     +   P+ + VG K V +  V
Sbjct: 559 --SGADDYVHEVVAALRAAGLRAEADTRNEKINYKVREHSVGKVPVIMAVGLKEVEERSV 616

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+       E   LE  I      
Sbjct: 617 SIRRLDRQGSESHGLESAIATLRAE 641


>gi|300863511|ref|ZP_07108463.1| threonyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
 gi|300338467|emb|CBN53605.1| threonyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
          Length = 608

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 152/444 (34%), Gaps = 40/444 (9%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +    +E   RD      +L L          G+  W P G      +   +++EQ + G
Sbjct: 191 YQRRKEEALRRDHRKLGKELGLFI-FADVVGPGLPLWTPKGTILRSILEDFLKQEQVKRG 249

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFR 119
            + +  P +   DL+  SG +  Y ++M  +   ++++       +  P +      I++
Sbjct: 250 YLPVVTPHIGRVDLFKTSGHWQKYKEDMFPMMAEDEESAKAEQGFVLKPMNCPFHIQIYK 309

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           S ++SYR LP    +    +R E     G +        D     +TPE     +  +  
Sbjct: 310 SELRSYRELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPEQLDAEFLSVVD 369

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L +F  L LK+   R                  D    +   S +  +    +     
Sbjct: 370 LILSVFKSLQLKNFKARLS--------------FRDPTSDKYMGSDEVWEQSQGAIRRAV 415

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           + +           A Y    D       D+L    ++    ++                
Sbjct: 416 ETLGMNYFEGIGEAAFYGPKLDFI---FSDALDREWQLGTVQVDYNLP--------ERFD 464

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +   DG       +     G++  +  ++    +     +P  +AP ++ L+ +    
Sbjct: 465 LEYVAEDGTRKRPVMIHRAPFGSLERLIGILI---EEYAGDFPVWLAPIQVRLLPV---S 518

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  +++ A++  +G     D   E++G     A+    P+  IVG+K V  + + I
Sbjct: 519 NDFLPFAQEVAAKMRILGIRAEADVSSERLGKLIRNAEKDKIPVMGIVGAKEVESNSLSI 578

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R +G    ++++EVIN      
Sbjct: 579 RTRASGELGMIAVDEVINRLKSAI 602


>gi|27229277|ref|NP_149065.2| threonyl-tRNA synthetase, cytoplasmic [Mus musculus]
 gi|59896669|sp|Q9D0R2|SYTC_MOUSE RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|26373003|dbj|BAB27429.2| unnamed protein product [Mus musculus]
 gi|74177703|dbj|BAE38950.1| unnamed protein product [Mus musculus]
 gi|74195699|dbj|BAE39654.1| unnamed protein product [Mus musculus]
 gi|74223282|dbj|BAE40773.1| unnamed protein product [Mus musculus]
 gi|74225376|dbj|BAE31616.1| unnamed protein product [Mus musculus]
 gi|148671337|gb|EDL03284.1| threonyl-tRNA synthetase, isoform CRA_b [Mus musculus]
          Length = 722

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 151/449 (33%), Gaps = 44/449 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 305 KLLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNTLMEFIRSE 362

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M    +   +     P +      +F  
Sbjct: 363 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSF-EVEKEQFALKPMNCPGHCLMFDH 421

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 422 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 480

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E    A+                        
Sbjct: 481 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIEIWNQAEK-----------------QLENSL 522

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 523 NEFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 571

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 572 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 627

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K  +   V
Sbjct: 628 --TCDEYAQKVRQQFHDAKFMADTDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTV 685

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I+ R   +  + ++EE +          
Sbjct: 686 NIRTRDNKVHGERTVEETVRRLQQLKQTR 714


>gi|169617674|ref|XP_001802251.1| hypothetical protein SNOG_12019 [Phaeosphaeria nodorum SN15]
 gi|111059311|gb|EAT80431.1| hypothetical protein SNOG_12019 [Phaeosphaeria nodorum SN15]
          Length = 779

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 83/484 (17%), Positives = 150/484 (30%), Gaps = 69/484 (14%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  L  L+E   RD      +  L     H+ S G   +LP GQ   + + A +REE   
Sbjct: 318 QAHLKFLEEAAKRDHRKIGKEQELF--FFHEASPGSPFFLPHGQIIFNTLQAFLREEYWN 375

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + S+ LW  SG +  Y ++M    D   +     P +      IF+   +
Sbjct: 376 RGYQEVQSPNMYSSALWKVSGHWQHYHEDMFTF-DVEKEKWGLKPMNCPGHALIFKHRER 434

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP       +  R+E      G+ R R F   D + F    + ++  +  +F    
Sbjct: 435 SYRELPIRMADFGVLHRNEASGALTGLTRVRRFQQDDTHIFCTQDQITEEIF-GLFDFLR 493

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++ + G     ++  + P G     E    A+                  + N    + 
Sbjct: 494 AVYGKFGFTF-KLKLSTRPDGFLGEVETWNKAEAKL-------------TEALNQFTAEG 539

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSA 300
                +     A Y    D+    + D+L    + +   ++      F      S   +A
Sbjct: 540 GGQWELNPGDGAFYGPKIDI---TISDALKREFQCATIQLDFQLPNQFELEYMTSEVAAA 596

Query: 301 TFKG----------------------------------ADGKDHYVQMGSYGIGAMRVVA 326
             K                                     G    V +     G+     
Sbjct: 597 KPKEEKAKEEPAPKDAPAPVEQKKEAADPNAPKKIQPPQPGYARPVMIHRAIYGSFERFI 656

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A+I     G+   W        I ++          D  +++ A L K       D  G 
Sbjct: 657 AIITEHFAGRWPFWLSPRQVMVIPVMP------SANDYVKEVQAVLRKNKFHADIDVSGN 710

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR----EDMSLEEVINYASHRF 442
            +  +   A L  +   ++VG++      V  ++R         E + L+E +       
Sbjct: 711 TMQKKIRTAQLSLYNFIMVVGAEEQKARAVNWRNRDDQATQQRGEIVPLDEAVEKLCKLR 770

Query: 443 SNNR 446
              +
Sbjct: 771 DERK 774


>gi|58337540|ref|YP_194125.1| prolyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227904181|ref|ZP_04021986.1| prolyl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
 gi|81311450|sp|Q5FJN0|SYP_LACAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|58254857|gb|AAV43094.1| prolyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227868200|gb|EEJ75621.1| prolyl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
          Length = 565

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 107/261 (40%), Positives = 145/261 (55%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+SK+F+P L+E P DA   SHKLM+R G I Q + G+Y++LPLG + L    +II +E
Sbjct: 1   MRQSKFFMPTLKEAPSDAVAESHKLMIRGGYIRQVTAGVYAYLPLGYRVLRKAESIIEQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDNINVPEMMMPHLLPATLWQESGRYQKYGAEMFKLKDRHGRESLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDQQFDDQKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGTYAANLEMAKSID 240

Query: 241 DIISLNSIVEQWTAPYAATSD 261
                    ++ T       D
Sbjct: 241 TFKQEPEEAKELTKVATPACD 261



 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFADIRTANEGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTKTMGADFLDQNGKAQ 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++AV+E     +G+ WP  +APF+I ++ +K + +   +  EK+  
Sbjct: 435 PVIMGSYGIGVTRMLSAVVEQHLTDRGVAWPKEIAPFEIHIVQMKMNKEDQTELAEKLEK 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           + S+   DV +DD  E+ G +FA ADL+G P+++ +G K  +D  VE+K        +MS
Sbjct: 495 KFSEK-YDVLYDDRKERAGVKFADADLVGAPVRITIGKK-AADGIVEVKRPTDEKAVEMS 552

Query: 431 LEEVINYASHRF 442
           ++E+  + +   
Sbjct: 553 IDELDKFVNQEL 564


>gi|41408814|ref|NP_961650.1| threonyl-tRNA synthetase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|73919807|sp|Q73WE4|SYT_MYCPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|41397173|gb|AAS05033.1| ThrS [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 684

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/452 (15%), Positives = 141/452 (31%), Gaps = 48/452 (10%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +++E  R D      +L L +    +   G+  + P G      +    R +    G 
Sbjct: 251 LRLIEEAQRRDHRKLGSELDLFS-FPDEIGSGLAVFHPRGGVVRRELEEYSRRKHIEAGY 309

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVM 114
             ++ P +  A L+  SG  D Y   M                 +  +     P +  + 
Sbjct: 310 EFVNTPHITKAQLFHTSGHLDWYADGMFPPMHLDAEYDDDGTVRKPGQDYYLKPMNCPMH 369

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T I+RS  +SYR LP   ++    +R E      G+ R+R F M D++ F    +     
Sbjct: 370 TLIYRSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTMDDSHIFCTREQLHGEL 429

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
              +    L +    GL    +   +                    +   S +  +    
Sbjct: 430 -ASLLRFVLELLGDYGLTDFYLELST----------------KDPDKFVGSDEVWEQATT 472

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           S      +            A Y       + +  D+L  + ++S   ++    F F  +
Sbjct: 473 SLADVAAESGLELVPDPGGAAFYGPKI---SVQARDALGRSWQMSTIQVD----FNFPER 525

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           + L  +A+      +   V +     G++     ++   + G    W   V    I +  
Sbjct: 526 FELEYTAS---DGTRQRPVMIHRALFGSIERFFGILTEHYAGAFPAWLAPVQAVGIPVA- 581

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
                       E + A+L   G  V  D   +++  +         P  ++ G + V+ 
Sbjct: 582 -----DEHVPYLESVAAQLKSYGVRVEVDASDDRMAKKIVHHTAQKVPFMLLAGDRDVAA 636

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             V  +         +  +  ++      ++ 
Sbjct: 637 GAVSFRFGDRTQINGVPRDSAVDAIVKWIADR 668


>gi|183602502|ref|ZP_02963867.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683545|ref|YP_002469928.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|254782886|sp|B8DTM3|SYP_BIFA0 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|183218143|gb|EDT88789.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621195|gb|ACL29352.1| prolyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 599

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 102/283 (36%), Positives = 153/283 (54%), Gaps = 2/283 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG   L+ +  +IREE N
Sbjct: 1   MSTLFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLAVLNKIEDVIREEIN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +   
Sbjct: 61  GIGAQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTVDEEGMRQAYMDERGAYE 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + + +T   + 
Sbjct: 181 RIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEALHTPAVEA 240

Query: 243 ISLNSIVE--QWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           +  +   +  +   P A T D          P       +  +
Sbjct: 241 VDCSQTPDATKRATPNARTIDEMIAFANAEYPREDGRDWQASD 283



 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 2/172 (1%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+
Sbjct: 424 GSGPLSFERGVEIGQVFQLGLKYSEALDLKVLNQNGKTVPVWMGCYGIGVSRVLACIAET 483

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
            HD KG+ WP ++AP ++ ++     D+   +A E++   LS  G +V +DD      G 
Sbjct: 484 HHDDKGLAWPMNIAPAQVHVMATG-KDEAAFEAAERLVDELSANGIEVLYDDRRKVSPGV 542

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +F  A+L+G P+  + G   V++  +E++ R     E++S++ V      R 
Sbjct: 543 KFKDAELIGVPIIAVAGRDTVNNGTIEVRDRDGSNSENISVDSVAQVIVDRV 594


>gi|187921760|ref|YP_001890792.1| threonyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
 gi|187720198|gb|ACD21421.1| threonyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
          Length = 404

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 144/427 (33%), Gaps = 41/427 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  +  +KL L      +   G+  W P G +    +   +R    R G  E+  P L +
Sbjct: 5   DHRVIGNKLDLF--HQQEEGVGMVFWHPRGWELYRVLEVYVRARMRRAGFREIRTPQLLA 62

Query: 77  ADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             LW +SG ++ +G  M  LAD    +A+   P        +F   ++SYR LP  + + 
Sbjct: 63  RSLWEKSGHWEKFGAAMYSLADAEEGRALCLKPMSCPCHVQVFNQRVRSYRELPVRYSEF 122

Query: 136 QLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               RDE      G+ R+R F+  DA+ F  T    +    +       ++  LG     
Sbjct: 123 GACHRDEPSGSLEGLKRTRAFVQDDAHVFC-TEAQIEVEVGRFCALLRTVYADLGFPRFK 181

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +   + P                           D    +             ++E   A
Sbjct: 182 VALATRPAMR-----------------AGDDQTWDRAEDALANAARAAGLEFEVLEGEGA 224

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-Q 313
            Y    + H   L DS   + +     ++    F    +    + A F     +      
Sbjct: 225 FYGPKLEFH---LLDSRARSWQCGTIQLD----FVLPER----LDAEFVNERNERERPVM 273

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G+M    A++   H+G   +W           + +    +  R   +++   L 
Sbjct: 274 IHHAVLGSMERFIAMLLEHHEGWLPVW------LAPEQVVVATISETNRAYAQEVMQALD 327

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G     D   E++  +   A     PL V+VGS+   D  + I+ R  G +  +S  E
Sbjct: 328 DAGVRAVLDSRPERLEKKIVDAREKQVPLLVVVGSRDERDQTISIRLRD-GRQMTVSFVE 386

Query: 434 VINYASH 440
            +     
Sbjct: 387 AVERLRS 393


>gi|227513178|ref|ZP_03943227.1| prolyl-tRNA synthetase [Lactobacillus buchneri ATCC 11577]
 gi|227083559|gb|EEI18871.1| prolyl-tRNA synthetase [Lactobacillus buchneri ATCC 11577]
          Length = 569

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 108/272 (39%), Positives = 156/272 (57%), Gaps = 1/272 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P+ AE  SHK+++R G I Q S G+Y++LPL  + L  +  I+R+E
Sbjct: 1   MKQSKILVPTLKETPKGAEALSHKMLVRAGYIKQISAGMYAYLPLAYRVLTKIETIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +T A EM +P +  A+LW ESGRY++YG E+ +  +R+D   I GPTHEE  T++ R 
Sbjct: 61  MEKTSAHEMLMPDVLPAELWKESGRYETYGPELFKFKNRHDTDFILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPR+G++RSREF+MKDAYSF         +Y  M  +
Sbjct: 121 SIKSYKQLPLVLYQIQNKYRDEDRPRYGLLRSREFIMKDAYSFAANEADLDDAYCAMEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GLK   +  + G +GG  S EF  +A  GE  +  S    D+    E     
Sbjct: 181 YRTIFDRIGLKYRVIIGDGGAMGGSDSKEFSAMAAVGEDTIVYSD-ESDYFANLEMAKSK 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                ++  E      A  +    +++ D L 
Sbjct: 240 VTDEPSTEAEADLKKVATPNVKSIDEVADFLG 271



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 104/189 (55%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A  D    K  +  P+ K      RGIE+GHIF  GT+YS  ++A     +G+   V MG
Sbjct: 380 AVDDFVVVKEGELSPDGKGKLKFTRGIEIGHIFKLGTRYSKSLNANVLDENGRSIPVIMG 439

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+++A+ E + D  G++WP +VAP+ + +I I    +V  +   +I  +L++ 
Sbjct: 440 SYGIGISRLLSAISEQNADENGLVWPVAVAPYTVHVIPINVKKEVQMNLANQIEEQLTEN 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G +FA +DLLG PL++ VG K   +  VEIK R  G   +  +EE+ 
Sbjct: 500 GIEVLVDDRRERPGVKFADSDLLGIPLRITVGKK-ADEGIVEIKIRKNGETVESKVEELS 558

Query: 436 NYASHRFSN 444
           +       N
Sbjct: 559 DTVKILLKN 567


>gi|152992232|ref|YP_001357953.1| prolyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
 gi|166980164|sp|A6Q7Y7|SYP_SULNB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|151424093|dbj|BAF71596.1| prolyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
          Length = 568

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 114/268 (42%), Positives = 157/268 (58%), Gaps = 2/268 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIRE 59
           MR S+  +P  +E P DA +ASH  ++R G I      G+Y++LPLG+K LD V  +++E
Sbjct: 1   MRFSRLLIPTTKETPNDATLASHIYLIRGGFIQSVGGSGLYNFLPLGKKVLDRVRNVVKE 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++ G  E+S+  +  A LW ESGRY+ YGKE+LR  DR +   + GPTHEE+M ++ R
Sbjct: 61  ELDKAGCQEVSLSFVTPASLWEESGRYEKYGKELLRFKDRKNNEFVLGPTHEEMMVNLVR 120

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +KSY+ LP   YQI LKFRDE+RPRFG+MR REFLMKD YSF  + E  K  ++ M  
Sbjct: 121 QSVKSYKQLPLNLYQINLKFRDEIRPRFGLMRGREFLMKDGYSFHTSEEDMKREFDLMEE 180

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +Y +IF RLGL+   + A+SG IGG  S EF+VLAD+GE  +    +  D+    E    
Sbjct: 181 TYKKIFTRLGLEFRVVEADSGAIGGSGSKEFMVLADSGEDTIVVCDNC-DYGANIEAAVR 239

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +        E              E L
Sbjct: 240 QEKDCEAKAPEAEAGKVHTPDTTTIESL 267



 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/193 (34%), Positives = 102/193 (52%), Gaps = 3/193 (1%)

Query: 252 WTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           +        D+   +  D  P+        +GIE GHIF  GT+YS P+ ATF   +GK 
Sbjct: 377 FEGMEGDYHDLVAVQEGDLCPKCGAPMRYTKGIEAGHIFQLGTQYSEPLGATFLDENGKA 436

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             + MG+YGIG  R++AA+IE +HD +G IW    APF + LI     D+      EK+Y
Sbjct: 437 QPMVMGTYGIGVSRLLAAIIEQNHDDRGCIWTKESAPFDLQLIVSNIKDETQVALGEKLY 496

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L+  G DV +DD  ++ G++    +LLG P  V++G K + D  VE   R   ++E++
Sbjct: 497 EALTAKGLDVLFDDRKDRFGAKMKDYELLGIPYAVVIGKK-LQDGLVEFISREGLVKEEV 555

Query: 430 SLEEVINYASHRF 442
           S E +++    R 
Sbjct: 556 SAEAILDVVGERV 568


>gi|302829308|ref|XP_002946221.1| hypothetical protein VOLCADRAFT_102823 [Volvox carteri f.
           nagariensis]
 gi|300269036|gb|EFJ53216.1| hypothetical protein VOLCADRAFT_102823 [Volvox carteri f.
           nagariensis]
          Length = 691

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 142/445 (31%), Gaps = 58/445 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   I +   RD  +   +  L     H  S G   +LP G +  + + + IRE+  
Sbjct: 279 LKEYQHRIEEAKKRDHRVLGVQQELF--FFHPLSPGSCFFLPHGARIYNTLMSFIREKYW 336

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P + + DLW  SG  D Y + M    +         P +      +F +  
Sbjct: 337 KYEYEEVITPNIYNFDLWRTSGHADHYRENMF-AFEIEKAEYGLKPMNCPGHCLMFANRT 395

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP       +  R+E      G+ R    +                     F+  
Sbjct: 396 RSYRELPLRLADFGVLHRNEFSGALQGLTRVMSEVQ-------------------GFLKL 436

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L   + +      M   + P G     E    A+T                 +     + 
Sbjct: 437 LGEVYDVFGLDYTMALSTRPEGYLGDIELWNRAET-----------------ALTEALNS 479

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +     A Y    D+    ++D+L    + +   ++    F    ++       
Sbjct: 480 TGREWVLNPGDGAFYGPKIDI---TVYDALRRKFQCATVQLD----FQLPIRF----GLE 528

Query: 302 FKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +    G  +  V +    +G++  + A++    +     WP  + P ++ ++ I    + 
Sbjct: 529 YASESGTLERPVIVHRAVLGSVERMFAILT---EHFAGKWPFWLNPRQVMVVPI---SEN 582

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                  +   L   G  V  D    ++  +   A L  +   ++VG    ++  V ++ 
Sbjct: 583 SSQYAFDVRRELRAAGLHVDVDASDRKMQKKVREAQLAQYNYILVVGEAEKAEQTVNVRT 642

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R   +     LE+V         + 
Sbjct: 643 RDNVVHGMFKLEDVRTLMVEERDSR 667


>gi|118475741|ref|YP_892822.1| threonyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
 gi|118414967|gb|ABK83387.1| threonyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
          Length = 617

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 69/437 (15%), Positives = 146/437 (33%), Gaps = 40/437 (9%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      + M           G+  WLP G +    +   +       G   +
Sbjct: 216 IEEAKKRDHRKLGAE-MKFFTFDDTIGVGLPIWLPNGARLRSRLEHKLYRTHRLRGYEPV 274

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P +  +D W  SG Y +Y + M      +++     P +      +++S I+SYR+LP
Sbjct: 275 RGPEILKSDAWKISGHYANYKENM-YFTVIDEQEYGIKPMNCVGHIKVYQSEIRSYRDLP 333

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F++  +  R E      G+ R REF   DA+ F + P   K +  ++      +    
Sbjct: 334 LKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHLFCM-PSQIKENVYEILSFVDTLMSAF 392

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G                          T   +        +    +     D+      I
Sbjct: 393 GFTYEMEI------------------STKPAKAVGDDAVWEIATKALKDALDEKGLKYGI 434

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    D+   K+ D+L    +     ++    F    ++       +   + +
Sbjct: 435 DEGGGAFYGPKIDI---KITDALKRKWQCGTIQVD----FNLPARFD----LGYIDENNE 483

Query: 309 DHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 +    +G+      ++     G+   W         + + I            +
Sbjct: 484 RKQPVMLHRAIMGSFERFIGILLEHTAGELPFW------IAPTQVVIIPISNEHHKYANE 537

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +++ L  +  D    +  E +  +   A+    P+ +++G   V++  V ++ R    ++
Sbjct: 538 VHSLLLDMDVDSEIFNKNETLNKKIRTAEKQRVPMIIVLGDNEVTNRGVALRDRRAREQK 597

Query: 428 DMSLEEVINYASHRFSN 444
           DMSL+E + +   + + 
Sbjct: 598 DMSLDEFLGFIQSKLNE 614


>gi|224373363|ref|YP_002607735.1| threonyl-tRNA synthetase [Nautilia profundicola AmH]
 gi|254783530|sp|B9L5U7|SYT_NAUPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|223589770|gb|ACM93506.1| threonyl-tRNA synthetase [Nautilia profundicola AmH]
          Length = 611

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 146/444 (32%), Gaps = 46/444 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD      +L L      +   G+  WLP G     N+  ++     R  
Sbjct: 200 YLKMLEEAAKRDHRKLGTELELWM-FDEEVGAGMPIWLPNGALLRGNLEKLLYSAHIRRE 258

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------DRNDKAMIYGPTHEEVMTDIFR 119
            + +  P L  + +W  SG Y +Y + M          ++        P +      IF 
Sbjct: 259 YLPVRGPELLRSHMWKISGHYYNYKENMYFTEIENDDPEKPADEYGIKPMNCLAHVKIFG 318

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             ++SY+ LP   ++     R E      G++R REF   DA+ F   P+  +    K+ 
Sbjct: 319 HKVRSYKELPLRLFEFGTVHRHEKSGVLHGLLRVREFTQDDAHIFCR-PDQIEEEVIKVL 377

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                I  R G         + P     S E                   +    S    
Sbjct: 378 EFVDSIMERFGFNYEM-EISTRPEKSIGSDE-----------------IWEKATESLKKA 419

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            + +     I E   A Y    D+   K+ D++    +     ++    F    ++    
Sbjct: 420 LNSLNREYGIDEGGGAFYGPKIDI---KITDAIGRKWQCGTIQVD----FNLPERFD--- 469

Query: 299 SATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             T+   + +    V +    IG+     A++   + G+   +   +    + +      
Sbjct: 470 -ITYVDENNERVRPVMIHRAIIGSFERFIAILTEHYAGEFPTFIAPIKAIFVPIA----- 523

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +  +K+   L +   +       + +  +   A+       VI+G + V    V 
Sbjct: 524 -ESHVEYAKKLQKELLEADINTEIFASNDSLNKRIRNAEKRRVGYVVIIGDEEVETGTVA 582

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           I+ R    +  M+  E +    + 
Sbjct: 583 IRDRKKREQYKMTKGEFVEMIKNL 606


>gi|149919496|ref|ZP_01907976.1| hypothetical protein PPSIR1_10610 [Plesiocystis pacifica SIR-1]
 gi|149819621|gb|EDM79048.1| hypothetical protein PPSIR1_10610 [Plesiocystis pacifica SIR-1]
          Length = 590

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 70/438 (15%), Positives = 131/438 (29%), Gaps = 38/438 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             K+   + +   RD      +L L        +     +   G    + +   +R+   
Sbjct: 183 LKKHLAALEEAKKRDHRKLGVELGLF--HFDPIAPASPFFTERGATIYNLLQEYVRKLYR 240

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +   +L+  SG YD Y   M   ++ +++     P +      ++R   
Sbjct: 241 KYDYGEVITPQIFDMELFRTSGHYDHYKDNMF-SSEIDNREFGVKPMNCPGHCVLYRQTR 299

Query: 123 KSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR LP          R E      G+ R R F   DA+ F    +  +     +    
Sbjct: 300 KSYRELPIRMADFGRLHRYERAGVTHGLTRVRTFCQDDAHVFCRLDQLEQE-IESVTSMI 358

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L  +   G + + +   + P       E    A+     V   +                
Sbjct: 359 LETYEAFGFEDVEIEISTRPDSYLGELETWDRAEKALADVLTRQ---------------- 402

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +I E   A Y    D     + D+L    ++    ++    F    ++ L   + 
Sbjct: 403 -GINYAINEGDGAFYGPKIDFG---VRDALRRPWQLGTCQLD----FQLPERFKLEYVSA 454

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                     +   +      R     +E +                             
Sbjct: 455 --DDARARPVMIHRAMLGSLERFFGVYLEHTAGKFPTWLAPVQIAILPIT-------DAH 505

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   K+ A     G  V  DD  E++G +   A LL  P  +++G K V    V  + R
Sbjct: 506 AEWARKVEAACKAAGLRVTTDDRSEKLGLKIREATLLRVPYMLVLGDKEVEAQGVAPRTR 565

Query: 422 LTGIREDMSLEEVINYAS 439
                   SLE+ +   +
Sbjct: 566 DGKTGALESLEDFVARIA 583


>gi|227499759|ref|ZP_03929859.1| proline--tRNA ligase [Anaerococcus tetradius ATCC 35098]
 gi|227218145|gb|EEI83411.1| proline--tRNA ligase [Anaerococcus tetradius ATCC 35098]
          Length = 572

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 107/239 (44%), Positives = 155/239 (64%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SKY++P L+++P DAE  SHK + R G I + + G+YS+LPLG+K ++ + AI+RE 
Sbjct: 1   MKLSKYYMPTLRQDPVDAETESHKFLTRGGFIRKQASGVYSFLPLGKKVVNKIEAIVREA 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+S   LQ+ ++W  SGR++++G EM ++ DR+D+    GPT EE  T + + 
Sbjct: 61  MEDYDSIEVSTSILQTREIWEASGRWETFGPEMFKIKDRHDREYCLGPTAEESFTSLIKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG+ RSR+FLMKDAYSFD   EG + SY KM+ +
Sbjct: 121 ELNSYKQLPLNIYQIVDKFRDEKRPRFGINRSRDFLMKDAYSFDKDMEGLEVSYQKMWDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y + F R+GL    +  +SG +GG  SHEFI L++TGE  +  + D  D+    E   F
Sbjct: 181 YEQAFDRMGLDYKIVEGDSGSMGGKKSHEFIALSETGEGVILYTDD-SDYAATDEKARF 238



 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/163 (41%), Positives = 92/163 (56%), Gaps = 1/163 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                  ARGIEVG+IF  GTKYS  + A F   +GK     MGSYGIG  R V+A++E 
Sbjct: 396 GSGILKEARGIEVGNIFQLGTKYSDSLGAYFLDENGKQQAFIMGSYGIGITRSVSAIVEQ 455

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            HD KGIIWP SVAPF+  +  +  +++  ++  EKIY RL +   DV  DD  E+ G +
Sbjct: 456 YHDDKGIIWPTSVAPFEAIVTIVNINNEEQKELGEKIYKRLKEERIDVLLDDRKERAGVK 515

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           F   DL+G P ++ VG K  SD  VE   R     E ++ ++ 
Sbjct: 516 FNDRDLIGIPYRITVG-KDASDDIVEYSTRALMENEKITSDQA 557


>gi|156120539|ref|NP_001095415.1| threonyl-tRNA synthetase, mitochondrial [Bos taurus]
 gi|152941102|gb|ABS44988.1| threonyl-tRNA synthetase-like 1 [Bos taurus]
          Length = 718

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 86/451 (19%), Positives = 148/451 (32%), Gaps = 57/451 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      +  L     H+ S G   +LP G +  + + A I+ E  R G  E+  PTL 
Sbjct: 300 RDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIKAEYTRRGFSEVKTPTLF 357

Query: 76  SADLWVESGRYDSYGKEML----------------RLADRNDKAMIYGPTHEEVMTDIFR 119
           SA LW  SG ++ Y ++M                   A  +   +   P +      +F 
Sbjct: 358 SAKLWELSGHWEHYREDMFALQPPGLDRPSSSQSDHSASPHTDTLALKPMNCPAHCLMFA 417

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +S+R LP          R E      G+ R R F   DA+ F   P+  +       
Sbjct: 418 HRPRSWRELPLRLADFGALHRAEASGSLGGLTRLRCFQQDDAHIFCA-PDQLEAEIRGCL 476

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++  LG                    F +   T  +         D         
Sbjct: 477 DFLHSVYTILGFS------------------FHMALSTRPSGFLGEPCLWDQAEQVLQQA 518

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            ++  +   I     A Y    DVH   + D+L    +     ++    F    ++    
Sbjct: 519 LEEFGAPWDISPGDGAFYGPKIDVH---VRDALGRPHQCGTIQLD----FQLPLRFD--- 568

Query: 299 SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +KG  G  +  V +    +G++  +  V+    +  G  WP  ++PF++ +I +   
Sbjct: 569 -LQYKGQLGALERPVLIHRAVLGSVERMLGVLA---ESCGGKWPLWLSPFQVVVIPVGTE 624

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   +   +    L   G     D D G  +  +   A L  +  Q +VG +  S   V
Sbjct: 625 QE---EYAREAQQSLRAAGLVGDLDADSGLTLSRRIRRAQLAHYNFQFVVGQREQSKRTV 681

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            I+ R      +  L E +           P
Sbjct: 682 NIRTRDNRRLGERDLAEAVQRLLELQDTRVP 712


>gi|296489553|gb|DAA31666.1| threonyl-tRNA synthetase, mitochondrial [Bos taurus]
          Length = 718

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 86/451 (19%), Positives = 148/451 (32%), Gaps = 57/451 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      +  L     H+ S G   +LP G +  + + A I+ E  R G  E+  PTL 
Sbjct: 300 RDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIKAEYTRRGFSEVKTPTLF 357

Query: 76  SADLWVESGRYDSYGKEML----------------RLADRNDKAMIYGPTHEEVMTDIFR 119
           SA LW  SG ++ Y ++M                   A  +   +   P +      +F 
Sbjct: 358 SAKLWELSGHWEHYREDMFALQPPGLDRPSSSQSDHSASPHTDTLALKPMNCPAHCLMFA 417

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +S+R LP          R E      G+ R R F   DA+ F   P+  +       
Sbjct: 418 HRPRSWRELPLRLADFGALHRAEASGSLGGLTRLRCFQQDDAHIFCA-PDQLEAEIRGCL 476

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++  LG                    F +   T  +         D         
Sbjct: 477 DFLHSVYTILGFS------------------FHMALSTRPSGFLGEPCLWDQAEQVLQQA 518

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            ++  +   I     A Y    DVH   + D+L    +     ++    F    ++    
Sbjct: 519 LEEFGAPWDISPGDGAFYGPKIDVH---VRDALGRPHQCGTIQLD----FQLPLRFD--- 568

Query: 299 SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +KG  G  +  V +    +G++  +  V+    +  G  WP  ++PF++ +I +   
Sbjct: 569 -LQYKGQLGALERPVLIHRAVLGSVERMLGVLA---ESCGGKWPLWLSPFQVVVIPVGTE 624

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   +   +    L   G     D D G  +  +   A L  +  Q +VG +  S   V
Sbjct: 625 QE---EYAREAQQSLRAAGLVGDLDADSGLTLSRRIRRAQLAHYNFQFVVGQREQSKRTV 681

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            I+ R      +  L E +           P
Sbjct: 682 NIRTRDNRRLGERDLAEAVQRLLELQDTRVP 712


>gi|240170657|ref|ZP_04749316.1| threonyl-tRNA synthetase [Mycobacterium kansasii ATCC 12478]
          Length = 697

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 65/449 (14%), Positives = 131/449 (29%), Gaps = 47/449 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 267 IEEAQRRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIVRRELEDYSRRKHTEAGYQFV 325

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y   M                 +  +     P +  +   I
Sbjct: 326 NSPHITKAQLFHTSGHLDWYADGMFPPMHIDAEHNADGSVRKPGQDYYLKPMNCPMHCLI 385

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FR+  +SYR LP   ++    +R E      G+ R R   M DA+ F    +        
Sbjct: 386 FRARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIFSTRDQMRDEL-RS 444

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +    GL    +   +                    +   S +  +       
Sbjct: 445 LLRFILDLLGDYGLTDFYLELST----------------KDPDKFVGSDEVWEEATNVLA 488

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               +            A Y       + ++ D+L    ++S   ++    F F  ++ L
Sbjct: 489 EVGAESGLDLVPDPGGAAFYGPKI---SVQVKDALGRTWQMSTIQLD----FNFPERFEL 541

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             +A       +   V +     G++     ++   + G    W   V    I +     
Sbjct: 542 DYTAA---DGTRQRPVMIHRALFGSIERFFGILTEHYAGAFPAWLAPVQVVGIPVA---- 594

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    E++ A+L   G  V  D   +++  +         P  ++ G + V    V
Sbjct: 595 --DEHVPYLEEVAAQLKSYGVRVEVDGSDDRMAKKIVHHTNQKVPFMLLAGDRDVQAGAV 652

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +         +  +  +       +  
Sbjct: 653 SFRFGDRTQLNGVPRDAAVAAIVEWLATR 681


>gi|256851262|ref|ZP_05556651.1| prolyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260660686|ref|ZP_05861601.1| prolyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|282934730|ref|ZP_06339973.1| proline--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|297206129|ref|ZP_06923524.1| proline--tRNA ligase [Lactobacillus jensenii JV-V16]
 gi|256616324|gb|EEU21512.1| prolyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260548408|gb|EEX24383.1| prolyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|281301305|gb|EFA93606.1| proline--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|297149255|gb|EFH29553.1| proline--tRNA ligase [Lactobacillus jensenii JV-V16]
          Length = 565

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 112/270 (41%), Positives = 149/270 (55%), Gaps = 3/270 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA  ASHK+M+R G I Q + G+YS+LPLG + L     II EE
Sbjct: 1   MRQSNFFMPTLKEAPADAVAASHKIMIRGGYIRQVTAGVYSYLPLGYRVLRKAERIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDRINVPEMIMPHLLPATLWQESGRYYKYGDEMFKLKDRHGRDSLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATKEQLDKQFDDQKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGTYAANLEMAKSID 240

Query: 241 DIISLN---SIVEQWTAPYAATSDVHNEKL 267
                      +E+   P   T +   E L
Sbjct: 241 TFKQEPEELKPMEKVATPGCETIEQLTEFL 270



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/193 (34%), Positives = 98/193 (50%), Gaps = 2/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     +     NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFSDIRTANEGEPDPVDHLPLQFTTSIEVGHIFKLGTYYTETMGADFLDQNGKAQ 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++A +E +    G+ WP  +APF + LI +K  D+V     E +YA
Sbjct: 435 PVIMGSYGIGVTRMLSAAVEQNLTEHGVAWPKEIAPFALHLIQMKMKDEVQTKLAESLYA 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           + S    DV +DD  E+ G +FA ADL+G PL++ +G K  +D  VE+K  L     +++
Sbjct: 495 KFSDK-YDVLYDDRNERAGVKFADADLVGAPLRITIGKK-AADGIVEVKRPLDEKASEVT 552

Query: 431 LEEVINYASHRFS 443
           L E+    +    
Sbjct: 553 LAELEALVAKELD 565


>gi|74142262|dbj|BAE31895.1| unnamed protein product [Mus musculus]
          Length = 722

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 151/449 (33%), Gaps = 44/449 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 305 KLLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNTLMEFIRSE 362

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       ++     P +      +F  
Sbjct: 363 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQ-FALKPMNCPGHCLMFDH 421

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 422 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 480

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E    A+                        
Sbjct: 481 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIEIWNQAEK-----------------QLENSL 522

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 523 NEFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 571

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 572 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---EKYGGKWPFWLSPRQVMVVPVGP- 627

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K  +   V
Sbjct: 628 --TCDEYAQKVRQQFHDAKFMADTDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTV 685

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I+ R   +  + ++EE +          
Sbjct: 686 NIRTRDNKVHGERTVEETVRRLQQLKQTR 714


>gi|237751610|ref|ZP_04582090.1| prolyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
 gi|229372976|gb|EEO23367.1| prolyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
          Length = 575

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 119/273 (43%), Positives = 163/273 (59%), Gaps = 4/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S +F P L+E P+DA + SH  +LR G IHQ   GIY++LPL Q  +D +  I+REE
Sbjct: 1   MRFSTFFAPTLKEAPKDAVLKSHIYLLRAGYIHQIGSGIYNFLPLAQIVMDKIKTIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA E+++  L    LW +SGRY+ Y  E+    D+   + + GPTHEE +T+I ++
Sbjct: 61  MNRAGANEITMGFLTPTSLWEQSGRYEKY-SELALFTDKKGASFVLGPTHEECVTEIAKT 119

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ LP   YQI LKFRDELRPRFG++R+REF+MKDAYSF  + E     +  M  +
Sbjct: 120 YIKSYKQLPLNLYQIHLKFRDELRPRFGLLRAREFVMKDAYSFHDSLESLNKEFINMRDT 179

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+RIF RLGL    + A+SG IGG  S EF+VLA+ GE  +       D+    E     
Sbjct: 180 YVRIFSRLGLDFRIVEADSGAIGGSGSREFMVLAECGEDTIVTCAKC-DYASNIEAA-VR 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
              + + I  Q T+ Y    +  N K  D L +
Sbjct: 238 KPKTCDEIAPQATSNYH-KFETPNVKTIDELSK 269



 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 2/191 (1%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
            +E++   Y        E    +        ++GIEVGHIF    KYS PM A F  ++G
Sbjct: 383 QLEEFDDLYYRDLVAVQEGDSCAKCGGTLRYSKGIEVGHIFKLEDKYSKPMQANFLLSNG 442

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 MG YG+G  R+++A++E   D KG +W  +VAPFK+ +I     ++        
Sbjct: 443 SSMPFTMGCYGLGVSRLISAILEQKADEKGCVWG-AVAPFKLDIIISNMKNEEEVLFATN 501

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +Y +L + G +V  DD  E+ GS+ A  +L+GF   +IVG + ++++K+E+  R   IR 
Sbjct: 502 LYTQLQEKGIEVILDDRNERFGSKIADFELIGFEYALIVGKR-LAENKLELIKRDGLIRT 560

Query: 428 DMSLEEVINYA 438
           + S   ++   
Sbjct: 561 EYSSANILESL 571


>gi|212715814|ref|ZP_03323942.1| hypothetical protein BIFCAT_00715 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661181|gb|EEB21756.1| hypothetical protein BIFCAT_00715 [Bifidobacterium catenulatum DSM
           16992]
          Length = 677

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 65/459 (14%), Positives = 132/459 (28%), Gaps = 50/459 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +   L+E   RD      ++ L +    +   G+  + P G   ++ +    RE   +
Sbjct: 242 KAYQTRLEEAAKRDHRKLGAEMDLFS-FPDEIGPGLAVFHPKGAAVINAMEDYSREMHRK 300

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHE 111
                +  P +    L+  SG    Y   M                 +        P + 
Sbjct: 301 HHYSFVQTPHITKGGLYETSGHLHWYKDGMYPAMRLDEEKDENGNVIKQGFDYYLKPMNC 360

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGS 170
            +   IF+S  +SYR LP   ++    +R E      G+ R R     D++ +    +  
Sbjct: 361 PMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMK 420

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 +    L +    GL    +   +                    +   S +  + 
Sbjct: 421 DEL-KNLLTFVLGLLKDFGLDDFYLELST----------------KDPHKYVGSDEIWEE 463

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +      +            A Y       + +  D++    +VS   ++      F
Sbjct: 464 ATNTLAEVAKESGLELIDDPCGAAFYGPKI---SVQARDAIGRTWQVSTIQLDFNLPERF 520

Query: 291 GTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           G          +  ADG       +     G++    AV+   + G    W   V    +
Sbjct: 521 G--------LEYIAADGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAPVQVLGV 572

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +              ++  A L +       D   ++ G +   A     P  +IVG +
Sbjct: 573 PVA------DEFAPHLQQFIASLEEETVRCEIDMSDDRFGKKIRNASKSKVPFILIVGEE 626

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            ++++ V  + R       +  +E              V
Sbjct: 627 DMNNNAVSFRFRDGSQLNGVPTDEAKAQIMTVLKKRVQV 665


>gi|227510249|ref|ZP_03940298.1| prolyl-tRNA synthetase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189901|gb|EEI69968.1| prolyl-tRNA synthetase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 569

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 108/272 (39%), Positives = 156/272 (57%), Gaps = 1/272 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P+ AE  SHK+++R G I Q S G+Y++LPL  + L  +  I+R+E
Sbjct: 1   MKQSKILVPTLKETPKGAEALSHKMLVRAGYIKQISAGMYAYLPLAYRVLTKIETIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +T A EM +P +  A+LW ESGRY++YG E+ +  +R+D   I GPTHEE  T++ R 
Sbjct: 61  MEKTSAHEMLMPDVLPAELWKESGRYETYGPELFKFKNRHDTDFILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPR+G++RSREF+MKDAYSF         +Y  M  +
Sbjct: 121 SIKSYKQLPLVLYQIQNKYRDEDRPRYGLLRSREFIMKDAYSFAANEADLDDAYRAMEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GLK   +  + G +GG  S EF  +A  GE  +  S    D+    E     
Sbjct: 181 YRTIFDRIGLKYRVIIGDGGAMGGSDSKEFSAMAAVGEDTIVYSD-ESDYFANLEMAKSK 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                ++  E      A  +    +++ D L 
Sbjct: 240 ATDEPSTEAEADLKKVATPNVKSIDEVADFLG 271



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 104/189 (55%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A  D    K  +  P+ K      RGIE+GHIF  GT+YS  ++A     +G+   V MG
Sbjct: 380 AVDDFVVVKEGELSPDGKGKLKFTRGIEIGHIFKLGTRYSKSLNANVLDENGRSIPVIMG 439

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+++A+ E + D  G++WP +VAP+ + +I I    +V  +   +I  +L++ 
Sbjct: 440 SYGIGISRLLSAISEQNADENGLVWPVAVAPYTVHVIPINVKKEVQMNLANQIEEQLTEN 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G +FA +DLLG PL++ VG K   +  VEIK R  G   +  +EE+ 
Sbjct: 500 GIEVLVDDRKERPGVKFADSDLLGIPLRITVGKK-ADEGIVEIKIRKNGETVESKVEELS 558

Query: 436 NYASHRFSN 444
           +       N
Sbjct: 559 DTVKILLKN 567


>gi|301095894|ref|XP_002897046.1| threonyl-tRNA synthetase [Phytophthora infestans T30-4]
 gi|262108475|gb|EEY66527.1| threonyl-tRNA synthetase [Phytophthora infestans T30-4]
          Length = 725

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 74/459 (16%), Positives = 139/459 (30%), Gaps = 65/459 (14%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD  +      L   M H  S G   +LP G +  + +   IR E  R G  E+ 
Sbjct: 303 EEAKKRDHRLIGRAQQLF--MFHPLSPGSSFFLPHGTRVFNTLADFIRREYRRRGYDEVI 360

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRL---------------ADRNDKAMIYGPTHEEVMT 115
            P +   +LW  SG   +Y  +M  +                  + +        + +  
Sbjct: 361 TPLIFKKELWETSGHLQNYHDDMFMVSQGIATDDACEEHGHTHSHGEEEYDQFGLKPMNC 420

Query: 116 DIFRSHIK-----SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
                  +     SYR LP          R+E      G+ R R F   DA+ F    + 
Sbjct: 421 PGHCLLFREAKKYSYRELPVRLADFSALHRNEASGALTGLTRVRRFHQDDAHIFCTAAQV 480

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                  +   +++  + +      +R  + P       E                   D
Sbjct: 481 QSEMSLAL--DFIKHVYGIFDFKFNLRLSTRPEKYMGDLE-----------------LWD 521

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                     DD     ++ E   A Y    D+    + D+L    +     ++    F 
Sbjct: 522 DAEDQLRLALDDFGQPWTVNEGDGAFYGPKIDI---VVTDALQRQHQCGTIQLD----FQ 574

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                       + GADG+ H   +    +     R++A +IE +     +         
Sbjct: 575 LPI----NFELEYDGADGEAHTPIIIHRAVLGSIERMMAILIEHTGGKWPLWLSPRQVAV 630

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKV---GCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
                      +  R+   ++ + L      G  V   D  + +  +   A + G+   +
Sbjct: 631 LPIA-------EAHREYAYEVASTLQNATARGLYVDVQDGSKTLNKRIREAQVAGYNYIL 683

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +VG K  +  +V I+ R   +     L + I+  +    
Sbjct: 684 VVGDKEQASGEVNIRTRDNQVHGAKPLGDFIDDITAAID 722


>gi|22299745|ref|NP_682992.1| threonyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
 gi|73919834|sp|Q8DGW0|SYT_THEEB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|22295929|dbj|BAC09754.1| threonyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
          Length = 605

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 139/441 (31%), Gaps = 41/441 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 189 EEALRRDHRKVGKELGLFI-FADPVGPGLPLWTPRGTVLRSTLEDFLKKEQLKRGYLPVV 247

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  L   + +A       +  P +      I++S ++S
Sbjct: 248 TPHIARVDLFKTSGHWQKYKEDMFPLMAEDAEAAAHEQGFVLKPMNCPFHIQIYKSELRS 307

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP    +    +R E     G +        D     +TPE     +  +    L +
Sbjct: 308 YRDLPLRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPEQLDAEFLNVVDLILTV 367

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F  L L     R                  D    +   S +       +     + +  
Sbjct: 368 FRCLRLNKFKARLS--------------FRDPKSDKYIGSDEAWSKAEAAIQRAVEQLGM 413

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            + +     A Y    D   E   D+L    ++    ++                  +  
Sbjct: 414 EHFLGIGEAAFYGPKLDFIFE---DALGREWQLGTVQVDYNLP--------ERFDLEYVA 462

Query: 305 ADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            D       M          R++  +IE                               R
Sbjct: 463 EDNTRRRPVMIHRAPFGSLERLIGILIEEYAGDFPFWLAPEQVRLLPVG-------DEQR 515

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E++ A+L + G  V  D  G+++G Q   A+    P+  I+G+K V    V I+ R 
Sbjct: 516 PYAERVAAQLRERGVRVSVDRSGDRLGKQIRNAETQKIPVMGIIGAKEVEHETVSIRTRA 575

Query: 423 TGIREDMSLEEVINYASHRFS 443
            G     +LE +I   +   +
Sbjct: 576 AGDVGTFALEHLIAKLTSAMA 596


>gi|291542490|emb|CBL15600.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Ruminococcus
           bromii L2-63]
          Length = 648

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 159/444 (35%), Gaps = 36/444 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +L   T  +    +G+   LP G + +  +   + + +   G 
Sbjct: 233 LKKLEEAKLRDHNKLGRELEYFTT-VDYVGQGLPILLPKGARVVQLLQRWVEDVEQSKGC 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA---MIYGPTHEEVMTDIFRSHIK 123
           +    P L   DL+  SG +D Y   M  L D +D+        P        ++ +  +
Sbjct: 292 LLTKTPLLAKRDLYKISGHWDHYLDGMFVLGDPHDEEKECFALRPMTCPFQYQVYLNKQR 351

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +    FR+E      G++R R+F + + +   L P+  +  +        
Sbjct: 352 SYRDLPMRLTETSTLFRNEASGEMHGLIRVRQFTISEGHYI-LRPDQLEQEFKGCLELAK 410

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA-DTGETQVFCSKDFMDFPIPSENTDFDD 241
                          ++  +  + +  F     +    +   +K+  +       T  DD
Sbjct: 411 YF------------LDTVGLLENCTFRFSQWDPENKNNKYEGTKEQWEESQAVMKTILDD 458

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +     I     A Y    D+  + +F    +   +    I++     FG          
Sbjct: 459 LDVDYEIGIDEAAFYGPKLDIQYKNVF---GKEDTIVTIQIDMLLAERFG--------MY 507

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +   DG+     +      ++      +    +    + P  +AP +I L+ IK   +  
Sbjct: 508 YIDKDGQKKLPYIIHRT--SLGCFERTLAYMIERFAGVMPLWLAPEQIRLLPIK---EGN 562

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  + I  RL+ +G  V  D   E IG +   A L   P  +++G   ++ S V ++ R
Sbjct: 563 VEYAQGIADRLTSLGMRVTVDSRDENIGPKIKAARLERIPYILVIGDNEMNSSTVTVRSR 622

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G   +M ++E +    +     
Sbjct: 623 KRGEIPNMPVDEFVALVKNEVDTK 646


>gi|238854745|ref|ZP_04645075.1| proline--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|260663977|ref|ZP_05864830.1| prolyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|282932864|ref|ZP_06338261.1| proline--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|313472268|ref|ZP_07812760.1| proline--tRNA ligase [Lactobacillus jensenii 1153]
 gi|238832535|gb|EEQ24842.1| proline--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|239529664|gb|EEQ68665.1| proline--tRNA ligase [Lactobacillus jensenii 1153]
 gi|260561863|gb|EEX27832.1| prolyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|281302899|gb|EFA95104.1| proline--tRNA ligase [Lactobacillus jensenii 208-1]
          Length = 565

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 113/273 (41%), Positives = 149/273 (54%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S +F+P L+E P DA  ASHK+M+R G I Q + G+YS+LPLG + L     II EE
Sbjct: 1   MRQSNFFMPTLKEAPADAVAASHKIMIRGGYIRQVTAGVYSYLPLGYRVLRKAERIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    EM +P L  A LW ESGRY  YG EM +L DR+ +  + GPTHEE  T+I   
Sbjct: 61  MDRINVPEMIMPHLLPATLWQESGRYYKYGDEMFKLKDRHGRDSLLGPTHEETFTEIIAK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NLKSYKQMPLALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R G+   P+ A+SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKRIFKRAGVTVHPVIADSGTMGGKNSTEFQAPAAIGEDTIATNEKGTYAANLEMAKSID 240

Query: 241 DIISLN---SIVEQWTAPYAATSDVHNEKLFDS 270
                      +E+   P   T D   E L   
Sbjct: 241 TFKQEPEELKTMEKVATPGCETIDQLTEFLHVP 273



 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 2/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     +     NE   D +          IEVGHIF  GT Y+  M A F   +GK  
Sbjct: 375 DFKVDEFSDIRTANEGEPDPVDHLPLQFTTSIEVGHIFKLGTYYTETMGADFLDQNGKAQ 434

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V MGSYGIG  R+++A +E +    G+ WP  +APF + LI +K +D+      E +  
Sbjct: 435 PVIMGSYGIGVTRMLSAAVEQNLTEHGVAWPKEIAPFTLHLIQMKMNDEDQTKLAESLET 494

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           + S+   DV +DD  E+ G +FA ADL+G P+++ +G K  +D  VE+K        ++S
Sbjct: 495 KFSEK-YDVLYDDRKERAGVKFADADLVGAPIRITIGKK-AADGIVEVKRPTDDKAVEIS 552

Query: 431 LEEVINYASHRFS 443
           ++++  + +    
Sbjct: 553 VDDLEAFVAKELD 565


>gi|54025682|ref|YP_119924.1| threonyl-tRNA synthetase [Nocardia farcinica IFM 10152]
 gi|54017190|dbj|BAD58560.1| putative threonyl-tRNA synthetase [Nocardia farcinica IFM 10152]
          Length = 703

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 60/448 (13%), Positives = 124/448 (27%), Gaps = 49/448 (10%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R      G   ++ 
Sbjct: 273 EAERRDHRKLGLELDLFS-FPDELGSGLPVFHPKGGIIRKELEEYSRRRHVDAGYEFVNT 331

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDIFR 119
           P +    L+  SG  D Y   M                 +  +     P +  +   IFR
Sbjct: 332 PHITKGHLFEVSGHLDWYRDGMFPAMHLDAEYNDDGTVRKPGQDYYVKPMNCPMHNLIFR 391

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  +SYR LP   ++    +R E      G+ R R     DA+ +    +          
Sbjct: 392 ARGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYCTKEQMHAEL-TNTL 450

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    GL    +   +                    +   S +  +    + +  
Sbjct: 451 QFVLGLLADYGLDDFYLELST----------------KDPKKFVGSDEIWEEATETLSKV 494

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                          A Y       + +  D+L    ++S   ++      FG       
Sbjct: 495 AQASGLELVPDPGGAAFYGPKI---SVQAKDALGRTWQMSTIQLDFNLPERFG------- 544

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DG       +     G++     V+   + G    W   V    I +      
Sbjct: 545 -LEYTAPDGSKQRPVMIHRALFGSIERFFGVLTEHYAGAFPAWLSPVQVVGIPVA----- 598

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +      +++   L   G     D   +++  +         P  ++ G + V+   V 
Sbjct: 599 -EAFAPHLDRVVELLRDHGVRAQVDRSDDRMQKKIFNNTAQKVPFMLLAGERDVNAGAVS 657

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            + R       + + + +       +N 
Sbjct: 658 FRFRDGTQVNGVPVADAVATIVAWITNR 685


>gi|86608604|ref|YP_477366.1| prolyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|114152268|sp|Q2JMD8|SYP_SYNJB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|86557146|gb|ABD02103.1| prolyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 609

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 107/241 (44%), Positives = 146/241 (60%), Gaps = 6/241 (2%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+     L+E+P +AE+ SHKL+LR   I + S GIY++LPL  + L  ++ I+R+E 
Sbjct: 6   RLSQMLFVTLREDPVEAELPSHKLLLRGCFIRRLSPGIYTYLPLLWRVLQKISEIVRQEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDIF 118
           N  G  E  +P LQ A++W ESGR+D Y +    M  L DR  +    GPTHEEV+T + 
Sbjct: 66  NAIGGQECLLPQLQPAEIWRESGRWDVYTQAEGIMFALKDRQGREQSLGPTHEEVITLLA 125

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           R  I+SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  + +Y  M+
Sbjct: 126 RDLIRSYRQLPQTLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHANEESLRQTYQDMY 185

Query: 179 VSYLRIFHRLGLKSIPMRAESGPI--GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
            +Y RI  R GL+   + A++G I      S EF+VLA  GE ++  + D   +    E 
Sbjct: 186 RAYSRILRRCGLEFRVVDADAGAIGGPSAASQEFMVLASAGEDEILYTPDGS-YAANVEK 244

Query: 237 T 237
            
Sbjct: 245 A 245



 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 69/196 (35%), Positives = 100/196 (51%), Gaps = 4/196 (2%)

Query: 251 QWTAPYAATSDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
               P     DV   +  D     P+    +ARGIE+GHIF  G K+SLPM ATF    G
Sbjct: 408 GEQYPLPEVVDVRKAQAGDRCLLNPDQILETARGIEIGHIFQLGLKFSLPMRATFTDEQG 467

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            +  + MG YGIG  R+  A +E SHD  GIIWP ++AP+ + ++     D       EK
Sbjct: 468 SEQPLWMGCYGIGVSRLAQAAVEQSHDANGIIWPVAIAPYHVVVVVPNISDPEQMSVAEK 527

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L+  G +  WDD  E+ G +F  ADL+G P ++  G + +   KVE+  R +G   
Sbjct: 528 LVQDLATAGIETLWDDRDERAGVKFKDADLIGIPYRITTG-RSLKQGKVELTERASGQAT 586

Query: 428 DMSLEEVINYASHRFS 443
           ++ +EEV+     R  
Sbjct: 587 EIPIEEVVTTLKERIE 602


>gi|325188237|emb|CCA22777.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 756

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 145/437 (33%), Gaps = 40/437 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD         L     H  S G   WLP G      +   +R +    G  E+  
Sbjct: 354 EATKRDHRRLGLSQDLY--FFHSLSPGSAFWLPNGAHIFSKLLEFLRAQYRERGYNEVIT 411

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + + +LW  SG    Y + M  + +   +     P +      +F   ++SYR LP  
Sbjct: 412 PNMFNMELWNTSGHAAHYKENMF-VFEVESQEFALKPMNCPSHCLMFDHRLRSYRELPIR 470

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           +    +  R+EL     G+ R R F   DA+ F    +  K                  L
Sbjct: 471 YADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKKEII-------------DFL 517

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           + +    ++  I       F +   T   +     +  +       +  D+ I  N   E
Sbjct: 518 QFMKFVYDTFDI------RFQLELSTRPAKAMGELEQWNRAEAQLASALDEFIGKNQWRE 571

Query: 251 --QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    D+    + D+L    + +   ++    F    +++L   +     +G 
Sbjct: 572 NPGDGAFYGPKIDIM---ITDALNRQHQCATVQLD----FQLPIRFNLKYRS--DDEEGF 622

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              + +     G++    AV+   +  K   W           I I        +   ++
Sbjct: 623 KRPIIIHRAIYGSLERFIAVLVEHYAAKFPFW------LSPRQILIVTVGAAFVEYGYQV 676

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              + + G  V  +D G+ +  +     L  +   ++VG+K      V I+ R   +   
Sbjct: 677 KEAIFRAGFQVEIEDSGKTLNKKIREGQLAHYNFILVVGAKEQETQSVNIRTRDNKVHGT 736

Query: 429 MSLEEVINYASHRFSNN 445
            +++E I+      ++ 
Sbjct: 737 KTIQEAIDMFQSLENSR 753


>gi|227524393|ref|ZP_03954442.1| prolyl-tRNA synthetase [Lactobacillus hilgardii ATCC 8290]
 gi|227088624|gb|EEI23936.1| prolyl-tRNA synthetase [Lactobacillus hilgardii ATCC 8290]
          Length = 569

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 108/272 (39%), Positives = 156/272 (57%), Gaps = 1/272 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P+ AE  SHK+++R G I Q S G+Y++LPL  + L  +  I+R+E
Sbjct: 1   MKQSKILVPTLKETPKGAEALSHKMLVRAGYIKQISAGMYAYLPLAYRVLTKIETIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +T A EM +P +  A+LW ESGRY++YG E+ +  +R+D   I GPTHEE  T++ R 
Sbjct: 61  MEKTSAHEMLMPDVLPAELWKESGRYETYGPELFKFKNRHDTDFILGPTHEETFTELIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPR+G++RSREF+MKDAYSF         +Y  M  +
Sbjct: 121 SIKSYKQLPLILYQIQNKYRDEDRPRYGLLRSREFIMKDAYSFAANEADLDDAYRAMEKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R+GLK   +  + G +GG  S EF  +A  GE  +  S    D+    E     
Sbjct: 181 YRTIFDRIGLKYRVIIGDGGAMGGSDSKEFSAMAAVGEDTIVYSD-ESDYFANLEMAKSK 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                ++  E      A  +    +++ D L 
Sbjct: 240 VTDEPSTEAEADLKKVATPNVKSIDEVADFLG 271



 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/189 (35%), Positives = 104/189 (55%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A  D    K  +  P+ K      RGIE+GHIF  GT+YS  ++A     +G+   V MG
Sbjct: 380 AVDDFVVVKEGELSPDGKGKLKFTRGIEIGHIFKLGTRYSKSLNANVLDENGRSIPVIMG 439

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+++A+ E + D  G++WP +VAP+ + +I I    +V  +   +I  +L++ 
Sbjct: 440 SYGIGISRLLSAISEQNADENGLVWPVAVAPYTVHVIPINVKKEVQMNLANQIEEQLTEN 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G +FA +DLLG PL++ VG K   +  VEIK R  G   +  +EE+ 
Sbjct: 500 GIEVLVDDRRERPGVKFADSDLLGIPLRITVGKK-ADEGIVEIKIRKNGETVESKVEELS 558

Query: 436 NYASHRFSN 444
           +       N
Sbjct: 559 DTVKILLKN 567


>gi|148671336|gb|EDL03283.1| threonyl-tRNA synthetase, isoform CRA_a [Mus musculus]
          Length = 544

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 151/449 (33%), Gaps = 44/449 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 127 KLLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNTLMEFIRSE 184

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M    +   +     P +      +F  
Sbjct: 185 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSF-EVEKEQFALKPMNCPGHCLMFDH 243

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 244 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 302

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E    A+                        
Sbjct: 303 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIEIWNQAEK-----------------QLENSL 344

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 345 NEFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 393

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 394 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 449

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K  +   V
Sbjct: 450 --TCDEYAQKVRQQFHDAKFMADTDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTV 507

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I+ R   +  + ++EE +          
Sbjct: 508 NIRTRDNKVHGERTVEETVRRLQQLKQTR 536


>gi|47479652|gb|AAH69346.1| TARSL2 protein [Homo sapiens]
 gi|47480952|gb|AAH69811.1| TARSL2 protein [Homo sapiens]
          Length = 466

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 150/447 (33%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 49  KMMRDWEKFQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLTDFIREE 106

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y + M       D      P +      +F  
Sbjct: 107 YHKRDFTEVLSPNMYNSKLWEASGHWQHYSENMFTFEIEKDT-FALKPMNCPGHCLMFAH 165

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 166 RPRSWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLQ 224

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  +          
Sbjct: 225 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEIEMWNEAEKQLQNSL 266

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 267 MDFGEPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 319

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 320 SK--DGDDKKRPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP--- 371

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C     ++ +   + G     D D    +  +   A L  +   ++VG K   D+ V +
Sbjct: 372 TCEKYALQVSSEFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNV 431

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   I  ++ +   I+   +     
Sbjct: 432 RTRDNKIHGEILVTSAIDKLKNLRKTR 458


>gi|33519811|ref|NP_878643.1| threonyl-tRNA synthetase [Candidatus Blochmannia floridanus]
 gi|33504156|emb|CAD83418.1| threonyl-tRNA synthetase [Candidatus Blochmannia floridanus]
          Length = 410

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 139/435 (31%), Gaps = 38/435 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +    D    SH+L L    + + + G+  W   G      +   IR++  +    E+  
Sbjct: 6   KIKKYDHRNLSHQLDLY--HLQEDAPGMVFWHVNGWTIFQELKNFIRKKLQQYQYQEVKS 63

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           PT+    LW ++G +D+Y  E +   D  ++     P +      IF   +K+Y++LP  
Sbjct: 64  PTMIDRVLWKKTGHWDNYY-EHIFTTDSENRKYCIKPMNCPGHIQIFNHGLKTYKDLPIR 122

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             +     R+EL     G+MR REF   DA+ F    +     Y+ + + Y         
Sbjct: 123 MAEFGSCHRNELSGSLHGLMRIREFTQDDAHIFCALTQIPNELYHCIKMMYDIYHVFNF- 181

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                             + IV   T   +        D      +          +   
Sbjct: 182 -----------------KKIIVKLSTRPKKRIGEDSVWDVAEQYLSDVLKQNNIEFTYQP 224

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    +     L DSL  + +     ++        +KY           +    
Sbjct: 225 NDGAFYGPKIEFI---LLDSLKRSWQCGTIQLDFTLPKLLESKY-------IDNNNSYQT 274

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++     VI   + G    W   +    +++               ++  
Sbjct: 275 PVIIHRAVLGSIERFIGVITEEYLGFFPTWLAPIQIIIMNVT------DGQISYVIELAK 328

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +LS     V  D   E I  +     +   P  +I G+  ++   V I+       ++  
Sbjct: 329 KLSNKNFRVKIDLRNETISFKIRSHIIHRIPYMLICGNAEMNQKTVSIRTFRGKNFKNYK 388

Query: 431 LEEVINYASHRFSNN 445
           ++  I    H   N 
Sbjct: 389 IDIFIEKLQHEIYNY 403


>gi|220926910|ref|YP_002502212.1| threonyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
 gi|219951517|gb|ACL61909.1| threonyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
          Length = 670

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 138/438 (31%), Gaps = 35/438 (7%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      ++ L      +   G+  W P G      + A +R    +  
Sbjct: 232 YLHRLEEAERRDHRRLGREMDLF--HFQEEGPGVVFWHPKGWTLFQELIAYMRRRL-KGD 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E++ P +    LW  SG +D Y + M      +++     P +      IF+  +KSY
Sbjct: 289 YREVNAPQILDKALWETSGHWDWYRENMFVTKTEDERVFAIKPMNCPGHVQIFKHGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G+MR R F   DA+ F    + +           L  
Sbjct: 349 RDLPLRLAEFGAVSRYEPSGALHGLMRVRAFTQDDAHVFCTEDQLAAECLKIN-DLILST 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G   I ++  + P     S      A+  E          +       T  +    
Sbjct: 408 YADFGFDEIVVKLSTRPEKRVGSDALWDHAE--EVMTRVLAQIEEQSGGRIRTAIN---- 461

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L D++  + +     ++      FG        A +  
Sbjct: 462 -----PGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVDFNLPERFG--------AFYVD 505

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           ADG+      +     G+M   A ++     G   +W   +     ++            
Sbjct: 506 ADGQKKTPVMVHRAICGSMERFAGILIEHFAGHFPLWLAPLQVVVATIT------SDADL 559

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++ A     G     D   E+I  +         P+ ++VG +   +  V I+   +
Sbjct: 560 YAREVLAAAEAAGLRAELDLRNEKINYKVREHSHAKVPVMLVVGRREGEEGTVSIRRLGS 619

Query: 424 GIREDMSLEEVINYASHR 441
                  L++ +      
Sbjct: 620 QQTRTAPLDQALAELVAE 637


>gi|302036852|ref|YP_003797174.1| prolyl-tRNA synthetase [Candidatus Nitrospira defluvii]
 gi|190343267|gb|ACE75655.1| prolyl-tRNA synthetase [Candidatus Nitrospira defluvii]
 gi|300604916|emb|CBK41249.1| Prolyl-tRNA synthetase [Candidatus Nitrospira defluvii]
          Length = 543

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 116/257 (45%), Positives = 166/257 (64%), Gaps = 1/257 (0%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR G+I + + GIY++LPLG + L  +  I+REE NR GA E+ +P    A+LW E+GR
Sbjct: 1   MLRAGLIRKVAAGIYTYLPLGLRVLRKIERIVREEMNRAGAQELLMPVASPAELWRETGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           +D YGKE+LR  DR+++    GPTHEEV+TD+FR  ++SYR +P  FYQIQ KFRDE+RP
Sbjct: 61  WDFYGKELLRFKDRHERDFCLGPTHEEVITDLFRREVRSYRQMPLNFYQIQTKFRDEIRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFG+MR REF+MKDAYSFD    G++ +Y KM+ +Y RIF R GL   P+ A++G IGG 
Sbjct: 121 RFGLMRGREFIMKDAYSFDRDEAGARLNYQKMYDAYNRIFTRCGLTFRPVEADTGLIGGT 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            SHEF+VLA+TGE  +  S+D   +    E  +     + ++  ++  AP +  +    E
Sbjct: 181 SSHEFMVLAETGEETIVYSEDGT-YAANVERAEVLPPDTADTSAQRPLAPVSTPNRRTVE 239

Query: 266 KLFDSLPENKRVSARGI 282
           ++   L    R   + +
Sbjct: 240 EVTAFLKIEPRQLVKTL 256



 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 120/230 (52%), Gaps = 10/230 (4%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE-- 273
            G+  V    +F+     ++    D     +  V+Q+        D+ N +  DS P   
Sbjct: 319 IGDWAVKAMANFVVGANQADTHFVDANWERDFKVDQFA-------DLRNARAGDSSPRKD 371

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
               +A+GIEVGH+F  GTKYS  M ATF  A G++    MG YGIG  R  AA +E +H
Sbjct: 372 GTLKTAKGIEVGHVFMLGTKYSQAMKATFLDAQGQEQLAVMGCYGIGVSRTAAASVEQNH 431

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D KGI WP  +APF ++L+ + +  Q      E +Y  + + G +V WDD  E+ G +F 
Sbjct: 432 DAKGIKWPVPIAPFHVTLLPL-SQSQPVTQLAETLYRAMQEAGIEVLWDDRDERAGVKFN 490

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ADL+G P  +++G K ++  +VE+K R TG  + ++ ++V+   S    
Sbjct: 491 DADLIGAPYHLVIGEKGLAQGQVELKLRHTGETQKVAPDQVVALLSSFLK 540


>gi|312077291|ref|XP_003141239.1| threonyl-tRNA synthetase [Loa loa]
 gi|307763596|gb|EFO22830.1| threonyl-tRNA synthetase [Loa loa]
          Length = 681

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 60/432 (13%), Positives = 135/432 (31%), Gaps = 45/432 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD         L     H  S G   W P G    +++   IR+E  + G  E+ 
Sbjct: 276 EEAAKRDHRKIGRDQELY--FFHPLSPGSAFWYPKGAHIYNSLCNFIRKEYRKRGFTEVI 333

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + ++ LW +SG ++ Y   M +  D   +     P +      ++    +++  LP 
Sbjct: 334 SPNMYNSKLWEQSGHWEHYSDNMFK-IDIEKETFGLKPMNCPGHCLMYSHMPRTHNELPL 392

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            +    +  R +      ++    F   DA+ F    +  +             ++ +  
Sbjct: 393 RYADFGVLHRKKTVEEITII----FQQDDAHIFCRQDQVVEE-IMNCIDFLKYAYNDVFG 447

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            +  +   + P                E       +  +          +       +  
Sbjct: 448 FTFKLNLSTRP----------------EVGYLGDIETWNSAEDKLKEALNASGHKWELNP 491

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+    + D+L    + +   ++    F    ++      ++   + +  
Sbjct: 492 GDGAFYGPKIDI---TIQDALRRLHQCATIQLD----FQLPIRFD----LSYFDENSERQ 540

Query: 311 YVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              M    +     R+ A + E+             A             +   D    +
Sbjct: 541 RPVMIHRALLGSIERMTAILAENYGGKWPFWLSPRQAKVITV-------HESQNDYGRVV 593

Query: 369 YARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             ++ + G +V +D D  + +  Q   A L  F   ++VG     +  V ++ R   +R 
Sbjct: 594 QRKIYEAGFEVEFDADSSDTLNKQIRNAQLAQFNFILVVGPTEARNGTVNVRTRDNAVRG 653

Query: 428 DMSLEEVINYAS 439
           ++ LE++I    
Sbjct: 654 EIKLEDLIEKFK 665


>gi|152990768|ref|YP_001356490.1| prolyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
 gi|166980135|sp|A6Q3S4|SYP_NITSB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|151422629|dbj|BAF70133.1| prolyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
          Length = 569

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 110/266 (41%), Positives = 159/266 (59%), Gaps = 1/266 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+P ++ENP+DA + SH  ++R G I Q + GIY++LP+G+K LD + AI++EE
Sbjct: 1   MRFSKTFIPTMKENPKDAVLPSHIYLVRGGFITQVASGIYNFLPIGKKVLDKIRAIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G  E+S+  +   +LW ESGR   YGKE+LR  DR +   + GPTHEE+M D+ R+
Sbjct: 61  LDKAGCQEVSLGFVTPCELWEESGRLGKYGKELLRFKDRKENCFVLGPTHEEMMVDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG++R REFLMKD YSF    E  +  Y+ M  +
Sbjct: 121 RVTSYKQLPLNLYQINWKFRDEARPRFGLLRGREFLMKDGYSFHADEEDMRREYDLMEKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDF 239
           Y  IF RLGL+   + A+ G IGG+ S EF+VLA++GE  +  C++      + +     
Sbjct: 181 YRNIFGRLGLRFRAVEADVGAIGGNASKEFMVLAESGEDTIAICTECEYAANVEAAKRKK 240

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNE 265
               +       +   Y       +E
Sbjct: 241 TKAPAEAPEFSNFEPFYTPNLSSIDE 266



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 102/191 (53%), Gaps = 3/191 (1%)

Query: 257 AATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A   D+   K  D  P+        +GIEVGHIF  GT+YS  M+ATF   DGK     M
Sbjct: 380 ALFVDIAQVKEGDLCPKCGAVMKLTKGIEVGHIFQLGTRYSAAMNATFLDKDGKAKPFVM 439

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G+YGIG  R+VAA IE +HD +G IWP  +APF++ +I     D+      E++Y +L  
Sbjct: 440 GTYGIGVSRLVAASIEQNHDERGCIWPLQIAPFEVDIIVSNIKDEEQIAFGEELYEQLKN 499

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV  DD  E+ G +    +L+GFP  +IVG K + +  V+I  R T  + ++  E+V
Sbjct: 500 AGVDVILDDRPERFGPKIKDFELIGFPYGIIVG-KGLKEGTVQIVQRETLDKVEIPKEDV 558

Query: 435 INYASHRFSNN 445
                 +   +
Sbjct: 559 FKTILEKVQAS 569


>gi|26326983|dbj|BAC27235.1| unnamed protein product [Mus musculus]
          Length = 722

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 150/449 (33%), Gaps = 44/449 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 305 KLLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNTLMEFIRSE 362

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       ++     P +      +F  
Sbjct: 363 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQ-FALKPMNCPGHCLMFDH 421

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 422 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 480

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E    A+                        
Sbjct: 481 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIEIWNQAEK-----------------QLENSL 522

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   +     F    ++    +
Sbjct: 523 NEFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLY----FQLPIRF----N 571

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 572 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 627

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K  +   V
Sbjct: 628 --TCDEYAQKVRQQFHDAKFMADTDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTV 685

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I+ R   +  + ++EE +          
Sbjct: 686 NIRTRDNKVHGERTVEETVRRLQQLKQTR 714


>gi|327308738|ref|XP_003239060.1| threonyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326459316|gb|EGD84769.1| threonyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 764

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 81/474 (17%), Positives = 144/474 (30%), Gaps = 53/474 (11%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  +  L  L+E   R+      +  L      + S G    LP G K  + +  ++R E
Sbjct: 310 KLLQEHLKFLEEAEKRNHLKIGKEQELF--FFDEVSPGCPFLLPNGTKIFNALQKLLRTE 367

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F  
Sbjct: 368 YRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMFGH 426

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    +  +     +F 
Sbjct: 427 RERSYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCTDNQIMEE-IEGLFD 485

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G     ++  + P       E    A+    +        D          
Sbjct: 486 FLRAIYGLFGFSF-KLKLSTRPEKYLGKLETWDFAEAQLREALTKFKGAD---------- 534

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY----- 294
                   I E   A Y    D+    + D+L    + +   ++      F  +Y     
Sbjct: 535 ------WEIDEGDGAFYGPKIDI---TISDALKREHQCATIQLDYQLPLNFKLEYMTGET 585

Query: 295 -----------SLPMSATFKGADGKDHYVQMGSYGIGAMRV---VAAVIESSHDGKGIIW 340
                      +    A       +       + G G  R      A+I S     GI+ 
Sbjct: 586 VPKSAAPATSKAEAKPAEGDSNPAQAQPSDSSTPGPGRARPVVIHRAIIGSFERFFGILI 645

Query: 341 PDSVAPFKISLIN----IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                 +   L      I        D  E++   L     +V  D  G  +  +     
Sbjct: 646 EHFGGKWPFWLSPRQILIVPVMASANDYVEELQEILRGDKLNVDIDLSGHTMQKKIRNGQ 705

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
           L  +    +VG++      V I++R     +     + LEE            R
Sbjct: 706 LAQYNFIFVVGAQEKESRSVNIRNRDDPSSQTKGSLVPLEEARAKLRALRKERR 759


>gi|302656156|ref|XP_003019834.1| hypothetical protein TRV_06122 [Trichophyton verrucosum HKI 0517]
 gi|291183606|gb|EFE39210.1| hypothetical protein TRV_06122 [Trichophyton verrucosum HKI 0517]
          Length = 764

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 81/474 (17%), Positives = 144/474 (30%), Gaps = 53/474 (11%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  +  L  L+E   R+      +  L      + S G    LP G K  + +  ++R E
Sbjct: 310 KLLQEHLKFLEEAEKRNHLKIGKEQELF--FFDEVSPGCPFLLPNGTKIFNALQKLLRTE 367

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F  
Sbjct: 368 YRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMFGH 426

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    +  +     +F 
Sbjct: 427 RERSYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCTDNQIMEE-IEGLFD 485

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G     ++  + P       E    A+    +        D          
Sbjct: 486 FLRAIYGLFGFSF-KLKLSTRPEKYLGKLETWDFAEAQLREALTKFKGAD---------- 534

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY----- 294
                   I E   A Y    D+    + D+L    + +   ++      F  +Y     
Sbjct: 535 ------WEIDEGDGAFYGPKIDI---TISDALKREHQCATIQLDYQLPLNFKLEYMTGET 585

Query: 295 -----------SLPMSATFKGADGKDHYVQMGSYGIGAMRV---VAAVIESSHDGKGIIW 340
                      +    A       +       + G G  R      A+I S     GI+ 
Sbjct: 586 VPKSAAPATSKAEAKPAEGDSNPAQAQPSDSSTPGPGRARPVVIHRAIIGSFERFFGILI 645

Query: 341 PDSVAPFKISLIN----IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                 +   L      I        D  E++   L     +V  D  G  +  +     
Sbjct: 646 EHFGGKWPFWLSPRQILIVPVMASANDYVEELQEILRGDKLNVDIDLSGHTMQKKIRNGQ 705

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
           L  +    +VG++      V I++R     +     + LEE            R
Sbjct: 706 LAQYNFIFVVGAQEKESRSVNIRNRDDPSSQTKGSLVPLEEARAKLRALRKERR 759


>gi|302497531|ref|XP_003010766.1| hypothetical protein ARB_03468 [Arthroderma benhamiae CBS 112371]
 gi|291174309|gb|EFE30126.1| hypothetical protein ARB_03468 [Arthroderma benhamiae CBS 112371]
          Length = 764

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 81/474 (17%), Positives = 144/474 (30%), Gaps = 53/474 (11%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  +  L  L+E   R+      +  L      + S G    LP G K  + +  ++R E
Sbjct: 310 KLLQEHLKFLEEAEKRNHLKIGKEQELF--FFDEVSPGCPFLLPNGTKIFNALQKLLRTE 367

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F  
Sbjct: 368 YRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMFGH 426

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    +  +     +F 
Sbjct: 427 RERSYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCTDNQIMEE-IEGLFD 485

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G     ++  + P       E    A+    +        D          
Sbjct: 486 FLRAIYGLFGFSF-KLKLSTRPEKYLGKLETWDFAEAQLREALTKFKGAD---------- 534

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY----- 294
                   I E   A Y    D+    + D+L    + +   ++      F  +Y     
Sbjct: 535 ------WEIDEGDGAFYGPKIDI---TISDALKREHQCATIQLDYQLPLNFKLEYMTGEA 585

Query: 295 -----------SLPMSATFKGADGKDHYVQMGSYGIGAMRV---VAAVIESSHDGKGIIW 340
                      +    A       +       + G G  R      A+I S     GI+ 
Sbjct: 586 VPKSAAPATSKAEAKPAEGDSNPAQAQPSDSSTPGPGRARPVVIHRAIIGSFERFFGILI 645

Query: 341 PDSVAPFKISLIN----IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                 +   L      I        D  E++   L     +V  D  G  +  +     
Sbjct: 646 EHFGGKWPFWLSPRQILIVPVMASANDYVEELQEILRGDKLNVDIDLSGHTMQKKIRNGQ 705

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
           L  +    +VG++      V I++R     +     + LEE            R
Sbjct: 706 LAQYNFIFVVGAQEKESRSVNIRNRDDPSSQTKGSLVPLEEARAKLRALRKERR 759


>gi|332821648|ref|XP_003310808.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic [Pan troglodytes]
          Length = 756

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 147/445 (33%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 339 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 396

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 397 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 455

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 456 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 514

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 515 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 556

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 557 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 605

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 606 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 661

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K      V
Sbjct: 662 --TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTV 719

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R   +  + ++ E I      
Sbjct: 720 NIRTRDNKVHGERTISETIERLQQL 744


>gi|224283879|ref|ZP_03647201.1| prolyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287860|ref|YP_003939118.1| prolyl-tRNA synthetase [Bifidobacterium bifidum S17]
 gi|309251796|gb|ADO53544.1| prolyl-tRNA synthetase [Bifidobacterium bifidum S17]
          Length = 599

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 99/236 (41%), Positives = 143/236 (60%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DA+  S KL+LR G + + + GI++WLPLG K L+ + AI+REE +
Sbjct: 1   MSTMFLRTLREDPADADTDSAKLLLRAGYVRKAAPGIWTWLPLGLKVLNKIEAIVREEID 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  + R++ YG+ + RL DR++   +  PTHEE+ T + +   
Sbjct: 61  GIGAQEVHFPALLPREPYEATHRWEEYGENLFRLKDRHEADYLLAPTHEEMFTLLVKDMY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG K +Y     +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTIDEEGMKKAYYDERGAYE 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           RIF RL LK +P+ A SGP+GG  S EF+     GE     +     + + +  T 
Sbjct: 181 RIFQRLDLKYVPVFAMSGPMGGSASEEFLAPMAIGEDTFALAPSGKAWNVEALTTP 236



 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 4/234 (1%)

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A   E   F     +           +        V         T +    +  D  P+
Sbjct: 363 AGVAEPVRFFIDAHVAEGTEWIIGGDEAGKHRFHAVYGRDFKADGTVEAVEVRHGDMSPD 422

Query: 274 N--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+
Sbjct: 423 GSGPLSFERGVEIGQVFQLGLKYSKALDLKVLDQNGKTVPVWMGCYGIGVSRVLACIAET 482

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGS 390
            HD +G+ W  +V       +     D    DA EK+ A L + G +V +DD  +   G 
Sbjct: 483 HHDERGLAW-PAVIAPAQVHVVATGKDAAAFDAAEKLVAELEERGIEVIYDDRKKVSPGV 541

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +F  A+L+G PL  + G   V++  +EI++R +     + + +     + R   
Sbjct: 542 KFKDAELIGVPLIAVAGRDTVNNGTIEIRNRDSSDSVAVPVADAAQTLASRLDT 595


>gi|197301753|ref|ZP_03166823.1| hypothetical protein RUMLAC_00479 [Ruminococcus lactaris ATCC
           29176]
 gi|197299193|gb|EDY33723.1| hypothetical protein RUMLAC_00479 [Ruminococcus lactaris ATCC
           29176]
          Length = 655

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 160/447 (35%), Gaps = 37/447 (8%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
             +L  L++  R D      ++ L T  +    +G+  + P G K +  +   I + +++
Sbjct: 227 NAYLEKLEDAKRRDHNKLGREMELFTT-VDVIGQGLPLFPPKGTKMIMKLQRWIEDLEDK 285

Query: 64  T-GAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRS 120
             G +    P +  +DL+  SG +D Y + M      +++ +     P        ++++
Sbjct: 286 EWGYVRTRTPLMAKSDLYKISGHWDHYKEGMFVLGDEEKDKEVFALRPMTCPFQYYVYKN 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             KSYR+LP+   +    FR E      G+ R R+F + +A++     +  +   N   +
Sbjct: 346 TQKSYRDLPYRMSETSTLFRSEDSGEMHGLTRVRQFTITEAHNVIRPDQAEEELKNCFDL 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +Y                 +  +  D+++         + +    +D+ +    +     
Sbjct: 406 AY-------------YVLSTLGLQDDVTYRLSKWDPANKKKYLGDEDYWNRTQEALREVL 452

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +        +   A Y    D+  + ++      K  +   I            +    
Sbjct: 453 REKGVPFVEADGEAAFYGPKIDIQAKNVY-----GKEDTMITI------QLDCAIAENFD 501

Query: 300 ATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +   +G       +    +G      A +    +     +P  + P ++ ++ I    
Sbjct: 502 LYYIDQNGDKVRPYIIHRTSMGCYERTLAWLI---EKYAGKFPTWLCPEQVRVLPI---S 555

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   +   K+ A L K   DV  D+  E+IG +   A L   P  ++VG +  +D  V +
Sbjct: 556 EKYEEYANKVCAELKKNDIDVTVDNRSEKIGFKIREARLDKLPYMLVVGQQEEADGTVSV 615

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G     SL+E I+         
Sbjct: 616 RSRFAGNEGTKSLDEFIDAICKEIRTK 642


>gi|145348306|ref|XP_001418593.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578823|gb|ABO96886.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 564

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 68/429 (15%), Positives = 142/429 (33%), Gaps = 36/429 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD       L L +        G+  W P G      +    ++     G   +  
Sbjct: 161 EAKRRDHRTIGKDLGLFSLQQDNAGGGLVFWHPKGAHMRHMIETYWKDLHLARGYELLYS 220

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +   +LW  SG  D Y + M +     D+     P +      +++    SY++LP  
Sbjct: 221 PHVARQELWKTSGHSDFYSENMYQPIKVEDEMYQLKPMNCPFHIVVYQDGYYSYKDLPIR 280

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           + ++   +R E      G+ R R F   DA+ F L  + +      +      I    G 
Sbjct: 281 WAELGTVYRYERSGTMHGLFRVRGFTQDDAHIFCLPDQITDE-IKSVLDLTEEILSTFG- 338

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                             EF V   T   +        D    +             + +
Sbjct: 339 ----------------FKEFEVNLSTRPEKSVGDDKIWDTAEGALKDALQMKGWDYIVDD 382

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+   K+ D++    + S   ++    F    ++ L         + K  
Sbjct: 383 GGGAFYGPKIDI---KILDAIGRKWQCSTVQLD----FNLPERFDLSY---VDRENAKQR 432

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + +     G++     ++    +     +P  +AP ++ L+ +        D  E +  
Sbjct: 433 PIMIHRAIFGSLERFFGILT---ENYAGEFPLWLAPIQVRLLPVT---DEVSDYTEGVAK 486

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G  V     G+++      A+    P+  +VG +   ++ + ++    G    +S
Sbjct: 487 KLRDAGVRVEI-CTGQRLAKLVRTAEKAKIPVMAVVGREEAENNTLAVRTFKDGDVGTLS 545

Query: 431 LEEVINYAS 439
           ++EV++  +
Sbjct: 546 VDEVLSRVT 554


>gi|221056250|ref|XP_002259263.1| threonine--trna ligase [Plasmodium knowlesi strain H]
 gi|193809334|emb|CAQ40036.1| threonine--trna ligase, putative [Plasmodium knowlesi strain H]
          Length = 888

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 89/481 (18%), Positives = 142/481 (29%), Gaps = 74/481 (15%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      KL          S G   WLP G K  + +   IR E     
Sbjct: 419 YLNFLEEAKKRDHRNVGKKLHFF-FFDKDTSPGSCFWLPHGAKIYNKLVDFIRREYRIRM 477

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S DLW  SG Y +Y   M  + +   K     P +      +F+    SY
Sbjct: 478 YDEVITPNVFSCDLWRTSGHYQNYKDCMF-IFNVEQKEWGMKPMNCPGHCIMFKQLNASY 536

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP       +  R+E+     G+ R R F   D++ F  T +  K            I
Sbjct: 537 RSLPIRLADFGVLHRNEISGSLSGLTRVRRFQQDDSHIFC-TFDQIKEEVLNTLHFIFFI 595

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K       + P                  +   +    DF         +    
Sbjct: 596 YDLFGFKYELF-LSTRP-----------------KKFIGNISTWDFAEQGLKDALNSANI 637

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATF 302
              I E   A Y    D+    L DS+    +     ++      F    K     +   
Sbjct: 638 SWKINEGDGAFYGPKIDIL---LRDSINRTHQCGTIQLDFQLPCRFNLQYKNKDFGALNE 694

Query: 303 KG---------------------------------------ADGKDHYVQMGSYGIGAMR 323
                                                      G D  V +    +G++ 
Sbjct: 695 GDNAESGTMKREEVAEKGEGNQPSQNKGSDTNLPTDTAEQLKKGFDRPVIIHRAILGSVE 754

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
              A++     GK   W             +        D    +Y  L+    DV  D 
Sbjct: 755 RFVAILIEHTAGKLPFW------ISPRQAIVLPVSDKFNDYANYVYQTLNNHFFDVEIDT 808

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEEVINYASHRF 442
               +  +   A L  F   ++VG K ++ + V +++R      ++ SLEE+I       
Sbjct: 809 SLNTLNKKIREAQLNQFNFILVVGEKELTTNTVTVRNRDDQNNHEVCSLEELIARFRKLL 868

Query: 443 S 443
            
Sbjct: 869 D 869


>gi|33519754|ref|NP_878586.1| prolyl-tRNA synthetase [Candidatus Blochmannia floridanus]
 gi|81836111|sp|Q7VRC8|SYP_BLOFL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33504099|emb|CAD83360.1| prolyl-tRNA synthetase [Candidatus Blochmannia floridanus]
          Length = 581

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 105/266 (39%), Positives = 159/266 (59%), Gaps = 2/266 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++Y L  ++E P+  E  SH+LMLR+GM+ Q S G+Y+WLP G + L  +  II EE
Sbjct: 1   MRTTQYLLATIKEIPKSCEPISHQLMLRSGMVRQISSGVYTWLPTGLRVLKKIENIIHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G +E+ +P  Q A+LW +SGR+  YG E+LR  +R ++  + GPTHEE++TD+  +
Sbjct: 61  MNKIGFLEIFMPITQPANLWKQSGRWSEYGLELLRFKNRTNQKFVLGPTHEEMITDLVCN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I S++  P   YQI  K+RDE RP+FGV+RS+EF+MKD YSF +  +  + +Y  ++  
Sbjct: 121 EILSHKQFPIKLYQINTKYRDEARPQFGVIRSKEFIMKDGYSFHIHQKSLEDTYYNIYQQ 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA--DTGETQVFCSKDFMDFPIPSENTD 238
           Y  IF R+GLK   ++A+ G IGG +SHEF         ET +F      D    +   +
Sbjct: 181 YHIIFKRIGLKFCVVQADPGNIGGIVSHEFQAYYNNTQNETAIFTETFNKDMSNINTRKN 240

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHN 264
            D +I+   I+         ++D HN
Sbjct: 241 NDIVINNIHILNTIQTIKLTSADFHN 266



 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 63/189 (33%), Positives = 104/189 (55%), Gaps = 4/189 (2%)

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           + + +K+  +           IE+GHIF  G KYS  +++  +  +  +  + MG YGIG
Sbjct: 393 ESNIKKINTNQIRKLLPIRNTIEIGHIFQLGKKYSNCINSCIQKKNKDNLNITMGCYGIG 452

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKV---G 376
             R+V  VIE  HD  GIIWP+ +APFK+++I I  +     ++  E++Y +LS +   G
Sbjct: 453 ITRIVPMVIEQHHDKHGIIWPNEIAPFKLAIIPINMYRFINVQNTAEELYTQLSSIPVIG 512

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            D+  DD  E  G  F   DLLG P  +I+  + +++ +VE K+R TGI + + L  +I 
Sbjct: 513 FDILLDDRKENPGIMFTDIDLLGIPHILIISERNLNNQEVEYKYRKTGIIQKIKLNLIIQ 572

Query: 437 YASHRFSNN 445
           + + +  NN
Sbjct: 573 FLTEKLMNN 581


>gi|90424612|ref|YP_532982.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
 gi|90106626|gb|ABD88663.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
          Length = 679

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 139/443 (31%), Gaps = 39/443 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      +   G+  W   G      + A +R       
Sbjct: 256 YLKQIEEAEKRDHRKLGRELDLF--HFQEEGPGVVFWHAKGWTIFQALIAYMRRRL-SGD 312

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDIFRS 120
             E++ P +    LW  SG ++ Y + M       D     +     P +      IF+ 
Sbjct: 313 YDEVNAPQILDKALWEISGHWEWYRENMFAAQSAGDEAEDKRWFALKPMNCPGHVQIFKH 372

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +  +  R E      G+MR R F   DA+ F    + ++        
Sbjct: 373 GLKSYRDLPLRMAEFGIVHRYEPSGAMHGLMRVRGFTQDDAHVFCTEAQLAEECLKIN-E 431

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L  +   G   I ++  + P     + E    A+     V            +E    
Sbjct: 432 LILSTYSDFGFGDIVVKLSTRPEKRVGTDEMWDHAERVMATVL-----------AEIEAA 480

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                  SI     A Y    +     L D++  + +     ++      FG        
Sbjct: 481 SGGRIKTSINPGEGAFYGPKFEY---VLRDAIGRDWQCGTTQVDFNLPERFG-------- 529

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           A +  ADG     V +     G+M     ++     G   +W   V     ++       
Sbjct: 530 AFYIDADGSKKAPVMVHRAICGSMERFIGILIEHFAGSFPLWLAPVQVVVTTIT------ 583

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  + + A   + G  V  D   E+I  +     L   P  ++VG K     +V +
Sbjct: 584 SEGDDYAKVVAAAARRAGLRVELDLRNEKINYKVREHSLAKIPAMLVVGKKEAESHQVSV 643

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           +   +  +  +   E I      
Sbjct: 644 RRLGSEGQTVLPTNEAIAALVEE 666


>gi|194374367|dbj|BAG57079.1| unnamed protein product [Homo sapiens]
          Length = 756

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 147/445 (33%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 339 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 396

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 397 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 455

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 456 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 514

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 515 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 556

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 557 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 605

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 606 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 661

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K      V
Sbjct: 662 --TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTV 719

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R   +  + ++ E I      
Sbjct: 720 NIRTRDNKVHGERTISETIERLQQL 744


>gi|227833256|ref|YP_002834963.1| Threonyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|262184240|ref|ZP_06043661.1| threonyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|254783518|sp|C3PGS1|SYT_CORA7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|227454272|gb|ACP33025.1| Threonyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
          Length = 687

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 67/448 (14%), Positives = 131/448 (29%), Gaps = 47/448 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L +    +   G   + P G      +    R      G   +S
Sbjct: 260 EEAEKRDHRRLGAELDLFS-FPDEIGSGFPVFHPNGATVRMEMEEHSRRRHIADGYSFVS 318

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRND------------KAMIYGPTHEEVMTDIF 118
            P L   DL+ +SG  D Y   M      +             +     P +  +   IF
Sbjct: 319 TPHLTKGDLFKKSGHLDFYADGMFPPMQLDGEWDADGYCTKQPQDYYAKPMNCPMHNLIF 378

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            S  +SYR LP   ++    +R E      G+ R+R F   D++ +  TPE  +    K+
Sbjct: 379 ASRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDSHIYC-TPEQLEEELTKV 437

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
               + +    GL    +   +                    +   S +  +       +
Sbjct: 438 LEFIISLLKDYGLDDFYLELST----------------KDPNKYVGSDEIWERSTAILQS 481

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +             A Y       + +  D++    ++S   ++    F    ++ L 
Sbjct: 482 VAEKSGLELVPDPAGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLPERFELE 534

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +A+      K   + +     G++     V+   + G    W        I +      
Sbjct: 535 YTAS---DGSKQRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVVGIPVA----- 586

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   EK+ A L   G     D   +++  +         P  ++ G + V    V 
Sbjct: 587 -DTFAPHLEKVCAELRSRGLRADVDTSDDRMQKKIRNHTTGKVPFMLLAGERDVEADAVS 645

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            +         + +E  +N         
Sbjct: 646 FRFLDGTQVNGVPVEAAVNVIEAWVRER 673


>gi|162452628|ref|YP_001614995.1| hypothetical protein sce4352 [Sorangium cellulosum 'So ce 56']
 gi|161163210|emb|CAN94515.1| thrS [Sorangium cellulosum 'So ce 56']
          Length = 753

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 130/414 (31%), Gaps = 39/414 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
            + +   G+  WLP G      +    R+     G   +  P +  ADLW  SG +D Y 
Sbjct: 369 FVEEIGAGLVMWLPKGGLLRTIIEDQWRKMHLEEGYDIVYSPHIAKADLWKTSGHWDFYR 428

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGV 149
           + M      +       P +      + +S  +SYR  P    ++   +R E      G+
Sbjct: 429 EGMFSPMSVDGHDYCCKPMNCPFHILMVKSRTRSYREFPMRLAELGTVYRYEAAGVMHGL 488

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           MR R F   DA+ F    +  +   +++    L++    G +   +   + P       E
Sbjct: 489 MRVRGFTQDDAHLFCRADQVEQE-IHRVLRFILKMLRTFGFEQFDINLSTRPEKYVGGLE 547

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               A++                 +       +    ++     A Y    D+   KL D
Sbjct: 548 DWAKAES-----------------TLAGALKALGLEYTVDPGGGAFYGPKIDI---KLVD 587

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAA 327
           +L    + S    +  +            +  F  A G+     M    +     R +  
Sbjct: 588 ALDRRWQCSTLQYDFNNP--------ERFTLGFVNAKGELEQPIMLHRALLGSIERFIGV 639

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++E              A                 D  E++   L   G    +    E+
Sbjct: 640 LLEHHAGALPAWLSPEQARVVTV-------SDKHNDHAEQVTQALRAHGIRASFVRSSEK 692

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +G++   A +   P  +++G K V      ++ R    R  M  E +  +   +
Sbjct: 693 LGAKIREAQVEKIPHMLVIGDKEVEAKGATVRLRDGSDRGFMKTEALAEFLREQ 746


>gi|224419073|ref|ZP_03657079.1| prolyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313142583|ref|ZP_07804776.1| prolyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313131614|gb|EFR49231.1| prolyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
          Length = 573

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 108/258 (41%), Positives = 153/258 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK+F+P  +E P+D  + SH+ +LR G I Q   GIY++LPLG+K LD ++ I++ +
Sbjct: 1   MRFSKFFIPTFKEVPKDVILKSHEYLLRGGFIQQIGSGIYNFLPLGKKVLDKISRIVKNK 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +  +  A LW  SGRYD YGKE+LR  DR +   ++GPTHEE +T++ ++
Sbjct: 61  MDEAGANEVLLGCVTPASLWQASGRYDRYGKELLRFKDRKENEFVFGPTHEETITELAKT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ LP  FYQIQ KFRDE+RPRFG+MR REF+MKD YSF    E  K  ++ M  +
Sbjct: 121 YIKSYKQLPLHFYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHSNYEDLKREFDVMEKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF  LGL    + A+SG IGG  S EF+VLA++GE  +                   
Sbjct: 181 YSAIFLELGLDFRAVEADSGAIGGSGSKEFMVLAESGEDTICVCDSCSYAANLEAANRLP 240

Query: 241 DIISLNSIVEQWTAPYAA 258
            +         +   +  
Sbjct: 241 KMPLTTPPEANFAKFHTP 258



 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/180 (35%), Positives = 94/180 (52%), Gaps = 1/180 (0%)

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +V          + K    +GIEVGHIF  G KYS  M ATF   +GK     MG YGIG
Sbjct: 393 EVKEGDYCKECHKGKLYFTKGIEVGHIFQLGEKYSQAMEATFLDEEGKAKPFVMGCYGIG 452

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R++AA+IE +HD KG+ W  + APF + ++     D+   +  EKIY  LS  G +  
Sbjct: 453 ISRLLAAIIEQNHDEKGMKWTATTAPFLLDIVVSNIKDENQSELAEKIYHALSANGIECL 512

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  E+ G++ A  +L+G P  +IVG K V + K+E+  R    + ++ + +  +    
Sbjct: 513 LDDRKERYGAKMADFELIGIPYALIVG-KGVEEGKIELVCRKNLEKINLEIADFESLIEK 571


>gi|25028341|ref|NP_738395.1| threonyl-tRNA synthetase [Corynebacterium efficiens YS-314]
 gi|23493626|dbj|BAC18595.1| putative threonyl-tRNA synthetase [Corynebacterium efficiens
           YS-314]
          Length = 720

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 60/458 (13%), Positives = 133/458 (29%), Gaps = 49/458 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   + +   RD      +L L +    +   G+  + P G      +    R   
Sbjct: 284 KLDEYQTMLAEAEKRDHRRLGTELDLFS-FPDEIGSGLPVFHPNGAIVRLEMEEHSRRRH 342

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL------------ADRNDKAMIYGPT 109
            + G   ++ P    +DL+ +SG    Y + M                 +  +     P 
Sbjct: 343 IQAGYSFVNTPHATKSDLFEKSGHLGFYKEGMFPPLQLDAEYDAEGNQTKPGQDYYLKPM 402

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPE 168
           +  +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +
Sbjct: 403 NCPMHNLIFDSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYC-TED 461

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             +     +    + +    GL    +   +                    +     +  
Sbjct: 462 QLEEELTSVLEFIISLLKDYGLDDFYLELST----------------KDPKKFVGDDEIW 505

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +           +         +  A Y       + +  D++    ++S   ++    F
Sbjct: 506 ERSTEILQRVATNSGLDLVPDPEGAAFYGPKI---SVQAKDAIGRTWQMSTVQLD----F 558

Query: 289 YFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
               ++       +   DG       +     G++     V+   + G    W       
Sbjct: 559 NLPERF----ELEYTSPDGSKQRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVV 614

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
            I +       +      EK+  +L   G     D   +++  +         P  ++ G
Sbjct: 615 GIPVA------EDFIPHLEKVVDKLRARGFRAEVDTSDDRMQKKIRTHTTGKIPFMLLAG 668

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            + V    V  +         + ++E +   S      
Sbjct: 669 GRDVEADAVSFRFLDGTQVNGVPVDEAVELISTWILER 706


>gi|253828011|ref|ZP_04870896.1| prolyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253511417|gb|EES90076.1| prolyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
          Length = 578

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 108/258 (41%), Positives = 153/258 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK+F+P  +E P+D  + SH+ +LR G I Q   GIY++LPLG+K LD ++ I++ +
Sbjct: 1   MRFSKFFIPTFKEVPKDVILKSHEYLLRGGFIQQIGSGIYNFLPLGKKVLDKISRIVKNK 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +  +  A LW  SGRYD YGKE+LR  DR +   ++GPTHEE +T++ ++
Sbjct: 61  MDEAGANEVLLGCVTPASLWQASGRYDRYGKELLRFKDRKENEFVFGPTHEETITELAKT 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ LP  FYQIQ KFRDE+RPRFG+MR REF+MKD YSF    E  K  ++ M  +
Sbjct: 121 YIKSYKQLPLHFYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHSNYEDLKREFDVMEKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF  LGL    + A+SG IGG  S EF+VLA++GE  +                   
Sbjct: 181 YSAIFLELGLDFRAVEADSGAIGGSGSKEFMVLAESGEDTICVCDSCSYAANLEAANRLP 240

Query: 241 DIISLNSIVEQWTAPYAA 258
            +         +   +  
Sbjct: 241 KMPLTTPPEANFAKFHTP 258



 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/184 (34%), Positives = 95/184 (51%), Gaps = 1/184 (0%)

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +V          + K    +GIEVGHIF  G KYS  M ATF   +GK     MG YGIG
Sbjct: 393 EVKEGDYCKECHKGKLYFTKGIEVGHIFQLGEKYSQAMEATFLDEEGKAKPFVMGCYGIG 452

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R++AA+IE +HD KG+ W  + APF + ++     D+   +  EKIY  LS  G +  
Sbjct: 453 ISRLLAAIIEQNHDEKGMKWTATTAPFLLDIVVSNIKDENQSELAEKIYHALSANGIECL 512

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  E+ G++ A  +L+G P  +IVG K V + K+E+  R    + ++ + +  +    
Sbjct: 513 LDDRKERYGAKMADFELIGIPYALIVG-KGVEEGKIELVCRKNLEKINLEIADFESLIEK 571

Query: 441 RFSN 444
              N
Sbjct: 572 IKQN 575


>gi|319956647|ref|YP_004167910.1| prolyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
 gi|319419051|gb|ADV46161.1| prolyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
          Length = 571

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 108/235 (45%), Positives = 150/235 (63%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK  +P  +E P DA + SH  +LR G I     G+Y++LPLG+++LD V  +++EE
Sbjct: 1   MRFSKLLIPTAKEAPSDAVLPSHIYLLRAGFIQSVGAGLYNFLPLGKRSLDRVRQVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +  +  A+LW ESGR++ YGKE+LR  DR +   + GPTHEE+M ++ R 
Sbjct: 61  LDAAGCQEVDLAFVTPAELWRESGRFEKYGKELLRFTDRKENEFVLGPTHEEMMVNLVRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQI+ KFRDE+RPRFG+MR REFLM+D YSF    E  K  ++ M  +
Sbjct: 121 SVKSYKQLPLHLYQIKTKFRDEIRPRFGLMRGREFLMEDGYSFHKDEEDMKREFDHMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF RLGL    + A+SG IGG  S EF+VLAD+GE  +   +   D+    E
Sbjct: 181 YSRIFTRLGLDFRVVEADSGAIGGSGSKEFMVLADSGEDTIVVCEGC-DYGANIE 234



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 70/208 (33%), Positives = 105/208 (50%), Gaps = 2/208 (0%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
              + +D   +   V  +   +A    V            +    +GIEVGHIF  GT+Y
Sbjct: 366 MGANKEDYHLIGVTVPDYGDFFADLVAVQEGDRCAKCG-GRLHYTKGIEVGHIFQLGTRY 424

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           S P++ATF   +GK     MG+YGIG  R++AA+IE  HD +G IW    APF + +I  
Sbjct: 425 SEPLNATFLDENGKRRPFVMGTYGIGVSRLLAAIIEQHHDDRGCIWTRESAPFDVEIIVS 484

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +   R+A E++Y  L   G +V  DD  E+ G +    +L+G PL ++VG K ++D 
Sbjct: 485 NIANDAEREAAEELYRLLKSKGVEVLLDDRKERFGFKMKDFELIGIPLGIVVGKK-LADG 543

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
           +VE+  R    R D+ LE V +    R 
Sbjct: 544 QVELIVRDGLERIDLPLERVADEVLERV 571


>gi|50306435|ref|XP_453191.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642325|emb|CAH00287.1| KLLA0D02772p [Kluyveromyces lactis]
          Length = 461

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 153/448 (34%), Gaps = 48/448 (10%)

Query: 18  AEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIR-EEQNRTGAIEMSVPTLQ 75
            E+++ + +     I    S G   +LP G K  + + + ++ ++QN+ G  E+  P + 
Sbjct: 43  HEVSTKQEL----YITDPISPGSIFFLPNGTKIFNKLVSFMKLQQQNKYGFQEVVTPLIY 98

Query: 76  SADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
              LW +SG +++Y  +M R+   D + +     P +      +F+   +SY  LP  F 
Sbjct: 99  RKTLWEQSGHWENYKDDMFRVEGNDVSKEEYGLKPMNCPGHCVVFKRFDRSYNELPLRFS 158

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
                 R+E      G+ R R+F   D + F    +  +    K        + ++   S
Sbjct: 159 DFSPLHRNEASGALSGLTRVRKFHQDDGHIFCTPDQVRQE-IQKCLELVDMCYTKVFPIS 217

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              +  +  +      E          +     +  D                 +  E  
Sbjct: 218 GDSKQAAYSLTLSTRPE----------KYVGDIEVWDHAEDVLKDTLQSWGQPWTTNEGD 267

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+    + D   ++ +V+   ++    F    ++       FK  D      
Sbjct: 268 GAFYGPKIDIL---VNDHTGKSHQVATIQLD----FQLPERFD----LQFKDKDNSYKRP 316

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +     G++    A++    D     WP  + P +  +I +K  D+   +   K    
Sbjct: 317 IMIHRAVFGSVERFMAILI---DSSKGKWPFWLNPNQCMVIPVKTEDEKIMELAFKTVNS 373

Query: 372 LSKVG-------------CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           L                   V  D   E +  +   A    +   +++G K V   KV I
Sbjct: 374 LRGENSDPKSPIPLNSFHFSVDMDARDESVSKRIREAIKKHYSYIIMIGDKEVEAGKVAI 433

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R +   + +++++V         N +
Sbjct: 434 RTRESKKVDLLTIDDVFERFVDLEKNYK 461


>gi|183982102|ref|YP_001850393.1| threonyl-tRNA synthetase ThrS [Mycobacterium marinum M]
 gi|238690929|sp|B2HM74|SYT_MYCMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|183175428|gb|ACC40538.1| threonyl-tRNA synthetase ThrS [Mycobacterium marinum M]
          Length = 691

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 67/450 (14%), Positives = 130/450 (28%), Gaps = 49/450 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 261 IEEAQRRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIVRRELEDYSRRKHTEAGYQFV 319

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y   M                 +  +     P +  +   I
Sbjct: 320 NSPHITKAQLFHTSGHLDWYADGMFPPMQIDAEYNADGTVRKPGQDYYLKPMNCPMHCLI 379

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FR+  +SYR LP   ++    +R E      G+ R R   M DA+ F    +        
Sbjct: 380 FRARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIFCTREQMRDEL-RS 438

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +    GL    +   +                    +   S +  +       
Sbjct: 439 LLRFVLDLLSDYGLTDFYLELST----------------KDPDKFVGSDEVWEEATNVLA 482

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               +            A Y       + ++ D+L    ++S   ++    F F  ++  
Sbjct: 483 EVGAESGLELVPDPGGAAFYGPKI---SVQVKDALGRTWQMSTIQLD----FNFPERF-- 533

Query: 297 PMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +  ADG       +     G++     ++   + G    W   V    I +    
Sbjct: 534 --GLEYTAADGTRQRPVMIHRALFGSIERFFGILTEHYAGAFPAWLAPVQAVGIPVA--- 588

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     E++ A+L   G  V  D   +++  +         P  ++ G + V    
Sbjct: 589 ---DEHVAYLEQVAAQLKSHGVRVEVDTSDDRMAKKIVHHTNQKVPFMLLAGDRDVQADA 645

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  +         +  E  +       S  
Sbjct: 646 VSFRFGDRTQINGVPREAAVAAIVDWISRR 675


>gi|50959620|gb|AAH74887.1| TARSL2 protein [Homo sapiens]
          Length = 441

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 150/447 (33%), Gaps = 40/447 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 24  KMMRDWEKFQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLTDFIREE 81

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y + M       D      P +      +F  
Sbjct: 82  YHKRDFTEVLSPNMYNSKLWEASGHWQHYSENMFTFEIEKDT-FALKPMNCPGHCLMFAH 140

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 141 RPRSWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLQ 199

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  +          
Sbjct: 200 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEIEMWNEAEKQLQNSL 241

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 242 MDFGEPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 294

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 295 SK--DGDDKKRPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP--- 346

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C     ++ +   + G     D D    +  +   A L  +   ++VG K   D+ V +
Sbjct: 347 TCEKYALQVSSEFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFILVVGEKEKIDNAVNV 406

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   I  ++ +   I+   +     
Sbjct: 407 RTRDNKIHGEILVTSAIDKLKNLRKTR 433


>gi|29829100|ref|NP_823734.1| prolyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
 gi|81838439|sp|Q82K46|SYP1_STRAW RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|29606206|dbj|BAC70269.1| putative prolyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
          Length = 564

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 104/263 (39%), Positives = 151/263 (57%), Gaps = 4/263 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+  +  L+++P DAE  +HKL++R   + + + GI+SWLPLG+K L+NV  ++REE 
Sbjct: 6   RMSRLMVKTLRDDPADAETLNHKLLVRADYVRRTAAGIWSWLPLGKKVLENVARVVREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+ +P L   + +  +GR++ YG E+ RL DR     + GPTHEE+ T + +  
Sbjct: 66  DAMGGQEVLLPALLPKEPYEATGRWEEYGPELFRLKDRKGAEYLLGPTHEEIFTQLVKDQ 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP   YQIQ K+RDE RPR G++R REFLMKD+YSFD   EG   SY     +Y
Sbjct: 126 CSSYKDLPVILYQIQAKYRDEARPRAGILRGREFLMKDSYSFDTADEGLAQSYALHREAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           ++IF+RLGL    + A SG +GG  S EF+  A  GE   F      D+   +E   F  
Sbjct: 186 IKIFNRLGLDHRIVSAVSGAMGGSASEEFLAPAPAGE-DTFVDCPACDYAANTEAVTFVA 244

Query: 242 II---SLNSIVEQWTAPYAATSD 261
                  +  VE+   P   T +
Sbjct: 245 PAVESVEHPAVEELDTPDTPTIE 267



 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 6/177 (3%)

Query: 266 KLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           +  D  P         R IE+GHIF  G KY+        G +GK   V MGSYGIG  R
Sbjct: 390 EEGDPCPSCGTGLRLDRAIEIGHIFQLGRKYADAFQLDVLGKEGKPVRVTMGSYGIGVSR 449

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            VAA+ E + D +G+ WP  +AP  +    + A   +  +    +  +L   G  V  DD
Sbjct: 450 AVAALAEQTADEQGLCWPKEIAPADVH--VVAAGKALQTELALDVAEKLGAAGVRVLVDD 507

Query: 384 M-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             G   G +F  A+L+G P  ++ G +      +E+K R TG RE++++EE I   S
Sbjct: 508 RAGVSPGVKFTDAELIGVPQILVAGRRSAE-GVLELKDRKTGEREELTVEEAIARLS 563


>gi|315122407|ref|YP_004062896.1| threonyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495809|gb|ADR52408.1| threonyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 653

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 153/445 (34%), Gaps = 37/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   I++   RD    + ++ L      +   G+  W   G K    + + +R +  
Sbjct: 231 LTQYLDFIVESEKRDHRKIAREMDLF--HTAEDGSGVIFWHQKGWKTFQTLISYMRRKI- 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDI 117
           +    E++ P +   +LW +SG +D Y   M  +   ++     ++    P +     +I
Sbjct: 288 KDDYEEINTPQVLDQNLWKQSGHWDWYRANMFAVQCADETIKDLRSFALKPMNCPGHVEI 347

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F+  +KSYR LP    +    +R+E      G+MR R F   DA+ F    +  +     
Sbjct: 348 FKHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFEECLKI 407

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                + I+   G ++I ++  + P     S      A++    V  +            
Sbjct: 408 H-NLIVSIYKDFGFENITVKLSTRPEKRVGSDALWDDAESIMQTVLNTIKTSSQS----- 461

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                      I+    A Y    +     L D++    +     I+      F      
Sbjct: 462 ------KINTGILPGEGAFYGPKFEYI---LKDAIGREWQCGTTQIDFNLPHRF------ 506

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             +A +  +  +  +  M    +     +   I    +      P  ++P +  +  I +
Sbjct: 507 --NAFYINSQSEKCHPVMIHRAV--FGSIERFIGIMIENFKGHLPLWLSPVQAVVTTITS 562

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  +++ A L      +  D   E+I  +         PL +I G K   +  +
Sbjct: 563 SS---IEYAQEVTALLKSNDLSIETDFRNEKINYKIREHSSKKIPLIIICGDKETQERSI 619

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+   +   + +++ + +   +  
Sbjct: 620 VIRRLGSKTSQSLNILDAVQMITQE 644


>gi|196012975|ref|XP_002116349.1| hypothetical protein TRIADDRAFT_50865 [Trichoplax adhaerens]
 gi|190580940|gb|EDV21019.1| hypothetical protein TRIADDRAFT_50865 [Trichoplax adhaerens]
          Length = 680

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 160/440 (36%), Gaps = 44/440 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD         L      + S G   +LP G      +  ++R++  + G  E+ 
Sbjct: 275 EEAAKRDHRKIGRDQELF--FFSELSPGSCFFLPRGAHIYGILMQLMRDQYRKRGFHEVL 332

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + S+ LW+ SG +  Y  +M    D         P +      +F    +S+R LP 
Sbjct: 333 SPNIYSSKLWMTSGHWQHYKDDMFTF-DVEKDQFGLKPMNCPGHCVMFSHRPRSWRELPL 391

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + +  +  R+EL     G+ R R F   DA+ F    +               I+  LG
Sbjct: 392 RYAEFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCRDDQVKDE-IKGCLDFLKYIYDTLG 450

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            + + +   + P       EF+                 D          D+      + 
Sbjct: 451 FQ-LKLFLSTRP------DEFM-----------GEIATWDRAEQQLRESLDEFGLKWGLK 492

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E+  A Y    D+   ++ D+L    + +   ++    F   T++    + T+ G +G D
Sbjct: 493 EKDGAFYGPKIDI---QVLDALRRPHQCATIQLD----FQLPTRF----NLTYVGKNGDD 541

Query: 310 --HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               V +    +G++  + AV+    +     WP  ++P +  +I + A      +   +
Sbjct: 542 TLRPVIIHRAILGSVERMIAVL---CENFAGKWPFWLSPRQAMVIPVAAK---FDEYALQ 595

Query: 368 IYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +  +L   G  V  D   G+ +  +   A L  +   ++VG K   +  V ++ R   + 
Sbjct: 596 VRDQLHSAGFYVDVDLAPGDTMNKKVRNAQLAQYNFSMVVGQKECENKSVNVRSRNNQVY 655

Query: 427 EDMSLEEVINYASHRFSNNR 446
            + ++ +VI       + ++
Sbjct: 656 GEQTIVKVIERF-EELNKSK 674


>gi|255710799|ref|XP_002551683.1| KLTH0A05192p [Lachancea thermotolerans]
 gi|238933060|emb|CAR21241.1| KLTH0A05192p [Lachancea thermotolerans]
          Length = 740

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 69/441 (15%), Positives = 156/441 (35%), Gaps = 41/441 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           + + RD      +  L     ++ S G   WLP G +  +N+  ++R E  + G  E+  
Sbjct: 329 EASMRDHRKIGREQELF--YFNEMSPGSCFWLPHGTRIYNNLVDLMRAEYRKRGFDEVIT 386

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + ++ LW  SG + +Y + M       +      P +      +F+S  +SY+ LP+ 
Sbjct: 387 PNMYNSKLWETSGHWGNYKENMFTFEVEKET-FGLKPMNCPGHCILFKSRERSYKELPWR 445

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                +  R+E      G+ R R F   DA+ F       +      F     ++   G 
Sbjct: 446 VADFGVIHRNEFSGALTGLTRVRRFQQDDAHIFCA-QNQIEQEIENCFSFLQYVYGVFG- 503

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                             EF +   T   +     +  +       +          +  
Sbjct: 504 -----------------FEFKMELSTRPEKFVGEIETWNNAEAKLESALRKWGGNWELNP 546

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKD 309
              A Y    D+   K+ D+L    + +   ++    F    ++ L   +     +   +
Sbjct: 547 GDGAFYGPKIDI---KISDALRRWHQCATIQLD----FQLPNRFELEFKSKDNQENENYE 599

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +     WP  ++P ++ ++ +       ++  +++ 
Sbjct: 600 RPVMIHRAILGSVERMTAILT---EHFAGKWPFWLSPRQVLVVPVGVK---YQEYAQEVR 653

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE-- 427
            +L +       D  G  +  +     +L +    IVG + +++  V I++R    ++  
Sbjct: 654 DKLCEQDFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMTEKSVNIRNRDVIEQQGK 713

Query: 428 --DMSLEEVINYASHRFSNNR 446
              ++ E V+          R
Sbjct: 714 NATIAFETVLQQLKKLKEEKR 734


>gi|197294184|ref|YP_001798725.1| threonyl-tRNA synthetase [Candidatus Phytoplasma australiense]
 gi|226701405|sp|B1V8W6|SYT_PHYAS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|171853511|emb|CAM11353.1| Threonyl-tRNA synthetase [Candidatus Phytoplasma australiense]
          Length = 641

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 66/445 (14%), Positives = 146/445 (32%), Gaps = 37/445 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E   RD +  + KL L      +   G+  WLP G      V   I +++    
Sbjct: 229 YLKLLEERKERDHKRLNKKLDLFM-FSQEVGLGLPFWLPKGATLRRIVERYIVDKELSHQ 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKS 124
              +  P + + +L+  SG  + Y + M  +    +K  ++  P +      I++   +S
Sbjct: 288 YHHVYTPIMANVELYRTSGHLEHYSQNMFPVMQLENKEKIVLRPMNCPHHMMIYKKSPRS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           Y+ LP    ++ +  R E       ++    +  +     + P+  +    K+    L +
Sbjct: 348 YKELPLRIAELGMMHRFEKSGAVSGLQRVREMNLNDAHNFVRPDQIEEEIKKIINLILEV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD-FPIPSENTDFDDII 243
           +    +     R                  D  + + +   D M             ++ 
Sbjct: 408 YRDFKITKYEFRLS--------------YRDPQDKEKYFPDDNMWQHAENILKKTIQELN 453

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y    DV   ++  +L   + +S   ++    F    K+      TF 
Sbjct: 454 LPFREAIGDAAFYGPKLDV---QVLTALGNEETLSTIQLD----FLLPQKFD----LTFI 502

Query: 304 GADGKDHYVQMGSYGIGAM--RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            A+ K     +    I +   R ++ +IE +     +              ++       
Sbjct: 503 DANNKHCRPVVIHRAIVSTLERFLSHLIEENKGVFPLWLAPVQILLIPVSSSVNLK---- 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               ++I   L   G     +     +G +   A  L  P Q++VG   ++ + +  +  
Sbjct: 559 --YTQEIKELLLSQGLRAEINSKEATLGYKIREAQELKIPYQIVVGDNEIAKNLITFRKY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
               +   ++E  I+  +      R
Sbjct: 617 GQKNQTTTNIETFISSLNQEIMEKR 641


>gi|167589762|ref|ZP_02382150.1| tRNA synthetase, class II (G, H, P and S) [Burkholderia ubonensis
           Bu]
          Length = 406

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 134/428 (31%), Gaps = 41/428 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  +  +KL L        S G   W P G      V   IRE   + G  E+  P + S
Sbjct: 5   DHRVLGNKLDLF--HQQDESPGAVFWHPRGMALYRVVEEYIRERMRQAGFAEVRTPQIAS 62

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             LW +SG ++ +G+ M  L D + +     P        +F+   +SYR+LP  + +  
Sbjct: 63  RALWEQSGHWEKFGRNMFSL-DSDGQPFCLKPMSCPCHVQVFKRGSRSYRDLPVRYSEFG 121

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R E      G+MR+R F   DA+   +  +  +    +       I+   G     +
Sbjct: 122 AVHRAEPSGSLHGLMRARAFTQDDAHVLCM-EDQVEAEVARFCRLLKTIYADFGFDRFDV 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              + P                           D                  I +   A 
Sbjct: 181 ALSTRPSVR-----------------AGDDALWDRSESMLALAARSAGLHFEIQQGEGAF 223

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQM 314
           Y    + H   L D      +     ++       G        AT+    G     V +
Sbjct: 224 YGPKLEFH---LLDRQGRKWQCGTIQLDFVLPERLG--------ATYVSESGAKATPVML 272

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               +G++     ++   H+G    W         ++          R   +        
Sbjct: 273 HHAVLGSLERFIGILLEHHEGWLPTWLAPDQIVVANIG------DEARPFADSAALAFET 326

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +GC V  D   E++  +   A  L  P+  + G K      V ++ R  G R  +S+ + 
Sbjct: 327 IGCRVLRDFRPERLPRKIFDARELAAPIFAVAGPKEAQSGAVSLRLR-NGERHALSIGDA 385

Query: 435 INYASHRF 442
           + Y   R 
Sbjct: 386 LAYLEKRV 393


>gi|326477787|gb|EGE01797.1| threonyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 763

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 80/473 (16%), Positives = 140/473 (29%), Gaps = 52/473 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  +  L  L+E   R+      +  L      + S G    LP G K  + +  ++R E
Sbjct: 310 KLLQEHLKFLEEAEKRNHLKIGKEQELF--FFDEVSPGCPFLLPNGTKIFNALQKLLRTE 367

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F  
Sbjct: 368 YRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMFGH 426

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    +  +     +F 
Sbjct: 427 RERSYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCTDNQIMEE-IEGLFD 485

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G     ++  + P       E    A+    +        D          
Sbjct: 486 FLRAIYGLFGFSF-KLKLSTRPEKYLGKLETWDFAEAQLREALTKFKGAD---------- 534

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL--- 296
                   I E   A Y    D+    + D+L    + +   ++      F  +Y     
Sbjct: 535 ------WEIDEGDGAFYGPKIDI---TISDALKREHQCATIQLDYQLPLNFKLEYMTGET 585

Query: 297 ----------PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP----- 341
                        A  +G           S   G  R    VI  +  G    +      
Sbjct: 586 IPKSAAPANPKAEAKPEGDSNPTQAQPSDSSTPGPGRARPVVIHRAIIGSFERFFGILIE 645

Query: 342 ----DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                         I I        D  E++   L     +V  D  G  +  +     L
Sbjct: 646 HFGGKWPFWLSPRQILIVPVMASANDYVEELQEILRGDKLNVDIDLSGHTMQKKIRNGQL 705

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
             +    +VG++      V I++R     +     + LEE            R
Sbjct: 706 AQYNFIFVVGAQEKESRSVNIRNRDDPSSQTKGSLIPLEEARAKLRALRKERR 758


>gi|262341223|ref|YP_003284078.1| threonine--tRNA ligase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272560|gb|ACY40468.1| threonine--tRNA ligase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 424

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 148/437 (33%), Gaps = 38/437 (8%)

Query: 11  LQENPR--DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           L+E+P   D      KL        +   G+  WLP G    +N+   + + Q ++G   
Sbjct: 9   LKEDPNTIDHRKIGKKLKFFI-FSDKVGSGLPLWLPRGTILRNNLEEFLTDIQKKSGYEM 67

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +  P +    L+++SG +  YGK+  +     R ++  +  P +     +++RS   SYR
Sbjct: 68  VVTPHIGHKKLYIQSGHWRKYGKDNFKPIQTPREEEEFLLKPMNCPHHCEVYRSQEWSYR 127

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP  F +    +R E      G+ R R F   DA+ F  T +     + K+      +F
Sbjct: 128 DLPKRFAEFGTVYRYEQSGELHGLTRVRSFTQDDAHIFC-TYDQVLEEFKKVINLVFYVF 186

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             LG     +R                   +       S+   +    +      +    
Sbjct: 187 RCLGFSEYTVRISLRD-------------TSKIDNYIGSEKNWEKAEKAILNAVKEEKIK 233

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
            SI     A Y    D     + DSL  + ++    ++                  +KG 
Sbjct: 234 ASINYGEAAFYGPKLDFL---IKDSLGRSWQLGTIQVDYNLP--------ERFDLYYKGK 282

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + +      +     G++  + A++     G   +W         +   I          
Sbjct: 283 NNEKCRPVMIHRAPFGSLERMIAIVIEHTKGNLPLW------LAPNQGVILPISDKYIVY 336

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +KI   +      VF D   E+I  +   ++    P  +I+G K   +  + ++    G
Sbjct: 337 AKKILNLMLNYNIRVFVDSRNEKINKKIRDSEEKKIPYMIILGEKEEKNEMISLRRHGLG 396

Query: 425 IREDMSLEEVINYASHR 441
                S+ + I    + 
Sbjct: 397 HIGTFSISKGIETIFNE 413


>gi|326476791|gb|EGE00801.1| threonyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 753

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 80/473 (16%), Positives = 140/473 (29%), Gaps = 52/473 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  +  L  L+E   R+      +  L      + S G    LP G K  + +  ++R E
Sbjct: 300 KLLQEHLKFLEEAEKRNHLKIGKEQELF--FFDEVSPGCPFLLPNGTKIFNALQKLLRTE 357

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F  
Sbjct: 358 YRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMFGH 416

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    +  +     +F 
Sbjct: 417 RERSYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCTDNQIMEE-IEGLFD 475

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G     ++  + P       E    A+    +        D          
Sbjct: 476 FLRAIYGLFGFSF-KLKLSTRPEKYLGKLETWDFAEAQLREALTKFKGAD---------- 524

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL--- 296
                   I E   A Y    D+    + D+L    + +   ++      F  +Y     
Sbjct: 525 ------WEIDEGDGAFYGPKIDI---TISDALKREHQCATIQLDYQLPLNFKLEYMTGET 575

Query: 297 ----------PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP----- 341
                        A  +G           S   G  R    VI  +  G    +      
Sbjct: 576 IPKSAAPANPKAEAKPEGDSNPTQAQPSDSSTPGPGRARPVVIHRAIIGSFERFFGILIE 635

Query: 342 ----DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                         I I        D  E++   L     +V  D  G  +  +     L
Sbjct: 636 HFGGKWPFWLSPRQILIVPVMASANDYVEELQEILRGDKLNVDIDLSGHTMQKKIRNGQL 695

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
             +    +VG++      V I++R     +     + LEE            R
Sbjct: 696 AQYNFIFVVGAQEKESRSVNIRNRDDPSSQTKGSLIPLEEARAKLRALRKERR 748


>gi|257068556|ref|YP_003154811.1| threonyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
 gi|256559374|gb|ACU85221.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Brachybacterium
           faecium DSM 4810]
          Length = 666

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 61/454 (13%), Positives = 130/454 (28%), Gaps = 49/454 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            I +   RD      +L L +    +   G+  + P G      +    R      G   
Sbjct: 248 RIAEAERRDHRRLGSELDLFS-FPDEIGSGLPVFHPKGAMVKMEMEDYSRRRHVEAGYSF 306

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTD 116
           +S P +   +L+  S   + Y + M                 R  +     P +  +   
Sbjct: 307 VSSPHITKKNLFETSRHLEWYAEGMYPPMHVDEERDDEGNITRQGQDYYLKPMNCPMHNL 366

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           ++RS  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +  +    
Sbjct: 367 VYRSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYTTREQMKEEL-T 425

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +    L +    GL    +   +      +  E                   D    + 
Sbjct: 426 SLLGFVLDLLRDYGLDDFYLELSTRDPEKSVGDE----------------TTWDEATRTL 469

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                +            A Y       + +  D++    ++S   ++            
Sbjct: 470 EEVATESGLELVPDPGGAAFYGPKI---SVQAKDAIGRTWQLSTIQLDF--------FEP 518

Query: 296 LPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +   DG       +     G++     V+   + G   +W   V    + +   
Sbjct: 519 ELFELEYTAPDGSRQRPVMIHRALFGSIERFFGVLLEHYAGAFPVWLAPVQVVGVPVA-- 576

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      E++ A+L   G  V  D   +++  +         P  +I G +  +  
Sbjct: 577 ----AEYVPYLEEVAAKLRAHGVRVEVDSSDDRMQKKIRTHTKEKVPYLLIAGGEDQAHG 632

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            V  + R       + ++  ++       +   V
Sbjct: 633 AVSFRMRDGSQDNGIDVDAAVDRIVTAIRDKAQV 666


>gi|257869604|ref|ZP_05649257.1| prolyl-tRNA synthetase [Enterococcus gallinarum EG2]
 gi|257803768|gb|EEV32590.1| prolyl-tRNA synthetase [Enterococcus gallinarum EG2]
          Length = 575

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 97/234 (41%), Positives = 146/234 (62%), Gaps = 1/234 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK F+P L+E P DAE  SH+L++R G I Q + GIY +LPL Q+ L+ +  ++REE
Sbjct: 9   MKQSKLFIPTLREIPSDAETLSHQLLVRAGYIRQVAAGIYMYLPLAQRVLEKIKKLMREE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM++P L   +LW  +GR   YG+ + +L DRN++  + GPTHEE  T++ +S
Sbjct: 69  LAKIDAVEMTMPVLLPLELWQSTGRDGLYGRSLYQLTDRNEREYVLGPTHEEPFTELIKS 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ K+RDE RPRFG++RSREF+M+D YSF         +Y +   +
Sbjct: 129 EISSYKRLPISLYQIQSKYRDEQRPRFGLIRSREFIMQDGYSFHADESSLDTTYRRYEAA 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y  I  R GL+   +  ++G +GG  S EF+ L+  GE ++ C     D+    
Sbjct: 189 YHAILQRCGLEYRAVIGDNGLMGGHDSKEFMALSQIGE-ELICYSTESDYVANW 241



 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 67/187 (35%), Positives = 102/187 (54%), Gaps = 3/187 (1%)

Query: 258 ATSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A +D    +  D  P+ K V    RGIEVGHIF  GTKYS  + AT    +G++  V MG
Sbjct: 386 AFADFRLVQEGDPSPDGKGVLTFTRGIEVGHIFKLGTKYSERLGATVVDENGQETPVMMG 445

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+++ ++E   + +GI WP  +AP+ I +I     D      CE++   +  V
Sbjct: 446 CYGIGVSRLLSTIVEQHGNEEGIDWPKEIAPYDIHIIQTTMEDSYQTALCEEVEQAMLAV 505

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD  E+ G +FA ADL+G P+++ +G+K  ++  VEIK + T    ++  EEV 
Sbjct: 506 GYEVLVDDRNERAGVKFADADLIGCPIRLTIGNK-ATEGIVEIKIKHTNATVEVRKEEVA 564

Query: 436 NYASHRF 442
              +   
Sbjct: 565 TTLTILL 571


>gi|268608298|ref|ZP_06142025.1| threonyl-tRNA synthetase [Ruminococcus flavefaciens FD-1]
          Length = 646

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 148/441 (33%), Gaps = 40/441 (9%)

Query: 2   RRSKY--FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           + S+   +L +++E   RD +    +  L   M    + G+  WLP G K  + +    R
Sbjct: 225 KASQLDEYLKMIEEAKLRDHKKLGKEQALF--MFDHTAPGMPYWLPRGWKLFNALLEYWR 282

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDI 117
                 G  E+S P L   +LWV SG +D Y   M  +    D       P +      +
Sbjct: 283 GVHEDHGYTEISGPVLSKKELWVTSGHWDHYQDGMFVIPAEEDNEVYCAKPMNCPNAIKV 342

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           + +  +SY+ LP  F Q+ +  R E      G+ R ++F   DA+      + +    N 
Sbjct: 343 YMNRQRSYKELPLKFNQVDVIHRKEKSGELNGLFRVQQFRQDDAHILVTEEQIASE-IND 401

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +      I++  GL+       + P            A+     +   K   D       
Sbjct: 402 IMDIATEIYNTFGLEY-KAELSTRPDDYMGDINVWNKAEADLKAILEDKYGPD------- 453

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                      + E   A Y    D+   K+ D++    ++    ++    F     + +
Sbjct: 454 --------GYELNEGDGAFYGPKIDL---KMKDAIGREWQMGTIQLD----FQLPLNFKM 498

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              A+      +   V +     G+      +I  +  G    W           + I  
Sbjct: 499 KYIAS---DGSEKQPVMIHRAIFGSFERFIGIITENFAGAFPFW------LSPMQVGIVP 549

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +K+ A L K       D   + + ++         P  VI+G     + +V
Sbjct: 550 IRTEHNDYAKKVAALLKKNHIRAEADYTDDNMKNKIRKFKDFKDPYVVIIGDSEAENEQV 609

Query: 417 EIKHRLTGIREDMSLEEVINY 437
            I  R     +++ L++ I  
Sbjct: 610 SINIRGNKQLKNVPLDKFIEM 630


>gi|297279894|ref|XP_002808285.1| PREDICTED: LOW QUALITY PROTEIN: threonyl-tRNA synthetase,
           mitochondrial-like [Macaca mulatta]
          Length = 669

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 86/457 (18%), Positives = 144/457 (31%), Gaps = 57/457 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
             +   RD      +  L     H+ S G   +LP G +  + + A IR E  R G  E+
Sbjct: 245 REEAELRDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFSEV 302

Query: 70  SVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKAMIYGPTHEEV 113
             PTL S  LW +SG ++ Y ++M                          +   P +   
Sbjct: 303 KTPTLFSTKLWEQSGHWEHYQEDMFAVQPSGSDRPASSQSDDSTRHTTDILALKPMNCPA 362

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              +F    +S+R LP          R E      G+ R R F   DA+ F  T +    
Sbjct: 363 HCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAE 422

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                      ++  LG         + P G                         D   
Sbjct: 423 -IQSCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------LGDPCLWDQAE 463

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                   +      +     A Y    DVH   L D+L    +     ++    F    
Sbjct: 464 QVLQRALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPL 516

Query: 293 KYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       +KG  G  +  V +    +G++  +  V+    +  G  WP  ++PF++ +
Sbjct: 517 RFD----LQYKGQAGALERPVLIHRAVLGSVERLLGVLA---ESCGGKWPLWLSPFQVVV 569

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           I +    +   +   +    L   G     D D G  +  +   A L  +  Q +VG K 
Sbjct: 570 IPVGTEQE---EYAREAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQFVVGQKE 626

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            S   V I+ R      +  L E +       +   P
Sbjct: 627 QSKRTVNIRTRDNRRLGEWDLPEAVQRLVELQNMRVP 663


>gi|145224420|ref|YP_001135098.1| threonyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
 gi|189083613|sp|A4TD09|SYT_MYCGI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145216906|gb|ABP46310.1| Ser-tRNA(Thr) hydrolase [Mycobacterium gilvum PYR-GCK]
          Length = 695

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 63/450 (14%), Positives = 132/450 (29%), Gaps = 49/450 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 256 IEEAQRRDHRKLGVELDLFS-FPDELGSGLPVFHPKGGVVRRELEEYSRRKHIEAGYEFV 314

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDI 117
           + P +    L++ SG  + Y   M                 +  +     P +  +   I
Sbjct: 315 NTPHITKEQLYITSGHLEWYADGMFPPMQIDAEYNEDGTVRKPGQDYYLKPMNCPMHHLI 374

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +RS  +SYR LP   ++    +R E      G+ R R     DA+ +    E       +
Sbjct: 375 YRSRGRSYRELPLRLFEFGSVYRYEKSGVIHGLTRVRGMTQDDAHIYCTREEMRDEL-AR 433

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +    GL    +   +                    +   S D  +    +  
Sbjct: 434 LLQFVLDLLADYGLDDFYLELST----------------KDPDKFVGSDDLWEEATETLR 477

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              +             A Y       + ++ D+L  N ++S   ++    F    ++  
Sbjct: 478 EVAESSGLALVPDPGGAAFYGPKI---SVQVRDALGRNWQMSTIQLD----FNMPDRF-- 528

Query: 297 PMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +  +DG       +     G++     V+   + G   +W   V    I +    
Sbjct: 529 --ELEYTSSDGTRRRPVLIHRALFGSIERFFGVLTEHYAGAFPVWLAPVQVVGIPVA--- 583

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     + + A L + G  V  D   +++  +         P  ++ G K V    
Sbjct: 584 ---DAHAGYLDGVAAELRRRGIRVEVDASDDRMAKKIVNHTNQKVPFMLLAGDKDVEAGA 640

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  +         +  ++ +       +  
Sbjct: 641 VSFRFGDRTQINGVPRDQAVEAIVDWVNRR 670


>gi|221480967|gb|EEE19381.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii GT1]
 gi|221501688|gb|EEE27452.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii VEG]
          Length = 844

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 83/466 (17%), Positives = 148/466 (31%), Gaps = 65/466 (13%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD  +    L L        S G   WLP G K  + +   +REE    G  E+ 
Sbjct: 390 EEAKKRDHRVLGQNLHLF-FFDTNVSPGSCFWLPDGAKVYNKLCMFMREEYRFRGFQEVI 448

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + S DLW  SG Y +Y + M  L D   K     P +      +F+    SYR LP 
Sbjct: 449 SPNIFSCDLWKVSGHYQNYKENM-YLFDVEGKEWGLKPMNCPGHCIMFKHLAPSYRQLPL 507

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +  +            ++ + G
Sbjct: 508 RLADFGVLHRNELSGSLTGLTRVRRFQQDDAHIFCRLDQVKEE-VADALNFLFFVYDQFG 566

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F +   T   +    +   D    +     ++      + 
Sbjct: 567 FS------------------FELFLSTRPKKALGERAVWDSAEAALKAALEETGRPWQLN 608

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATFKGA-- 305
               A Y    D+    L+D+L    +     ++      F    +      A  +    
Sbjct: 609 PGDGAFYGPKIDIR---LWDALKRPHQCGTIQLDFQLPIRFNLQYRTQDEAVAGARDKAK 665

Query: 306 -----------------------------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                                         G    V +    +G++  + AV+     GK
Sbjct: 666 EDKETGEKRTDSEHEQKEEEAFGVELPLRPGMARPVIIHRAILGSIERMCAVVIEHTGGK 725

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
              W   ++P +  ++ I        D    +   L   G +V  D     +  +   A 
Sbjct: 726 LPFW---LSPKQCIVLPISDK---VNDYAASVRDVLHSCGYEVGLDVSNNTVNKKIREAQ 779

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHR 441
           L  +   ++VG K  +D  V ++ R     ++ +S+E+++     +
Sbjct: 780 LQQWNYLLVVGEKERADKTVTVRDRADPEHQKVLSMEDLLTLFEKQ 825


>gi|284044947|ref|YP_003395287.1| prolyl-tRNA synthetase [Conexibacter woesei DSM 14684]
 gi|283949168|gb|ADB51912.1| prolyl-tRNA synthetase [Conexibacter woesei DSM 14684]
          Length = 560

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 95/221 (42%), Positives = 133/221 (60%), Gaps = 2/221 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S Y LP  ++ P DAE  SH+LM+R G+I Q   G++++LP G +    V  IIREE 
Sbjct: 3   RLSSYLLPTEKQAPADAEAISHQLMVRAGLIRQLGAGLWTYLPAGWRVHRRVEQIIREEM 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  EM +P L  A+ W  +GR +    E+ +L DR    M+   THEE++T      
Sbjct: 63  DAIGGQEMLMPLLNPAEPWRRTGRIE--IDEIFKLEDRKGTEMVLAMTHEEIVTTHVAQV 120

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SYR+LP   YQIQ+K RDE RPR GV+R+REF MKD+YSFD    G + SY K  V+Y
Sbjct: 121 VRSYRDLPQILYQIQVKERDEPRPRAGVLRTREFRMKDSYSFDRDEAGLEESYAKHIVAY 180

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            RIF R GL+   + ++ G +GG  +HE++     GE +V 
Sbjct: 181 DRIFERTGLEWYRVESDVGMMGGTAAHEYMAPCAAGEDEVA 221



 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 96/193 (49%)

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           VE         +DV   +  D++  +     + IEVG+IF  GT+YS  + A+F    G 
Sbjct: 363 VEPGRDFPFERADVRAVEPGDTVGGHPIRIEKAIEVGNIFKLGTRYSSALGASFLDESGA 422

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              V MG YGIG  R+VAA +E   D  GI WP ++APF   L+ I   +   R   +++
Sbjct: 423 QQLVTMGCYGIGPARIVAAAVEQYADDAGIAWPRALAPFDAELVVISRGESEERAFADRL 482

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L   G DV +DD     G +FA A+LLG PL+V VG + ++  ++E++ R    R  
Sbjct: 483 YEELKATGLDVLYDDRDAGPGEKFADAELLGAPLRVTVGKRTLAAGELEVQLRRGRERRS 542

Query: 429 MSLEEVINYASHR 441
           + LE         
Sbjct: 543 VPLEGAAEAVHEL 555


>gi|21672515|ref|NP_660582.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25009415|sp|Q8K9S2|SYP_BUCAP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|21623136|gb|AAM67793.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 571

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 103/226 (45%), Positives = 152/226 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY    L+E P  A+I SH+LML++GMI + S GIY WLP G + L+ +  II+ E
Sbjct: 1   MRASKYLFSTLKETPHHAKIISHQLMLKSGMIRKLSSGIYIWLPTGIRVLNKIKDIIKNE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+E+ +P +Q   LW  SGR   YG+E+ +  DR ++  I GPT+EEV+T+  R+
Sbjct: 61  MRKINALEVLMPVVQPKKLWENSGRLSIYGEELFQFYDRRNQKFILGPTNEEVVTNFIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I S++ LP   YQIQ KFRDE+RPRFG++RSREF+MKDAYSF +     + +YN  + S
Sbjct: 121 EINSFKELPLIIYQIQTKFRDEIRPRFGIVRSREFIMKDAYSFHINKHCLEKTYNDFYQS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           Y+ IF+++ ++   + A+SG +GG +SHEF  L++ GE ++  SK+
Sbjct: 181 YINIFNKIKIQFRAVNADSGSMGGSISHEFQALSENGEDEIVFSKN 226



 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 98/192 (51%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+ N    D   +        + IE+GHIF  G +YS  M+   +       ++
Sbjct: 378 PIPIIKDIRNITKKDISSDGSKSLEIKKSIEIGHIFQLGKEYSKKMNVLVQEQHNNYKHI 437

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYAR 371
            MG YGIG  R+VA+VIE ++D  GIIWPDS+APF++ ++ +   +    ++  E +Y  
Sbjct: 438 HMGCYGIGITRIVASVIEQNYDDNGIIWPDSIAPFQVVILPLNTKNCIKIKEITENLYKI 497

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K   DV   D  E+ G  F   DL+G P Q+I+  + ++++KVE + R       + +
Sbjct: 498 LKKEKIDVILYDRNERPGIMFNQIDLIGIPHQIIISPRHINENKVEYRERKNNKSTLIKV 557

Query: 432 EEVINYASHRFS 443
           +E+  +   + +
Sbjct: 558 KEITYFLKKKLN 569


>gi|238504300|ref|XP_002383381.1| threonyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
 gi|317138130|ref|XP_001816697.2| threonyl-tRNA synthetase, cytoplasmic [Aspergillus oryzae RIB40]
 gi|220690852|gb|EED47201.1| threonyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
          Length = 721

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 78/461 (16%), Positives = 142/461 (30%), Gaps = 41/461 (8%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ +  L  L+E   R+      +  L      + S G    LP G K  + +  ++R E
Sbjct: 281 KQMQEHLKFLEEAEKRNHVKIGKEQELF--FFDEVSPGCPFLLPNGTKIFNALQTLLRSE 338

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W  SG +  Y  +M +L D   +     P +      +F  
Sbjct: 339 YRKRGYQEVQTPNMYDVGIWKTSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHFVLFGH 397

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    + +      +F 
Sbjct: 398 RERSYRELPLRLADFGVLHRNEASGALSGLTRVRKFQQDDTHIFCTQDQITSE-IEGLFD 456

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G     ++  + P                  +     +  ++         
Sbjct: 457 FLQSIYGLFGFTF-KLKLSTRP-----------------EKYLGELETWNYAEEQLKAAM 498

Query: 240 DDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                 +  + E   A Y    D+    + D+L    + +   ++      F  +Y    
Sbjct: 499 TKFKGDDWTIDEGDGAFYGPKIDI---TIADALKREFQCATIQLDYQAPINFKLEYMSNE 555

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW---------PDSVAPFKI 349
            A    A  +    +  S   G  R    VI  +  G    +                  
Sbjct: 556 KADKSQAAAESAEGENKSSEPGPGRARPVVIHRAIIGSFERFLGILTEHFGGKWPFWISP 615

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
             I I        D  E++   L     +V  D  G  +  +     L  +    +VG++
Sbjct: 616 RQILIVPVMPAVNDYVEELQTILRGDKLNVDIDISGNTMQKKIRTGQLAQYNFIFVVGAQ 675

Query: 410 FVSDSKVEIKHRL---TGIREDM-SLEEVINYASHRFSNNR 446
                 V I++R    T  +  M  LEE            R
Sbjct: 676 EKEARTVNIRNRDDPATQKQGVMIPLEEAREKLRALRKERR 716


>gi|197097988|ref|NP_001125825.1| threonyl-tRNA synthetase, cytoplasmic [Pongo abelii]
 gi|55729334|emb|CAH91401.1| hypothetical protein [Pongo abelii]
          Length = 563

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 149/449 (33%), Gaps = 44/449 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 146 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 203

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 204 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 262

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 263 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 321

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 322 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 363

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 364 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 412

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 413 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 468

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  + L ++VG K      V
Sbjct: 469 --TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNLILVVGEKEKISGTV 526

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I+ R   +  + ++ E I        + 
Sbjct: 527 NIRTRDNKVHGERTISETIERLQQLKESR 555


>gi|302404307|ref|XP_002999991.1| threonyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
 gi|261361173|gb|EEY23601.1| threonyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
          Length = 790

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 79/473 (16%), Positives = 148/473 (31%), Gaps = 64/473 (13%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD      +  L     H+ S G   WLP G +  + + A I+E+  +    E+
Sbjct: 326 LEEAAARDHRKLGEQQQLF--FFHELSPGSAMWLPHGARIYNTLMAYIKEQYFKRDYHEV 383

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + ++DLW  SG +  Y  +M  + D + +     P +      +F    K+Y  LP
Sbjct: 384 ITPNMYNSDLWKVSGHWAHYKDDMF-VMDVDKEQFALKPMNCPGHCLMFGHAPKAYHQLP 442

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           +      +  R+E      G+ R R F   DA+ F    +  +     +F     ++  L
Sbjct: 443 WRVADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCREDQIGQE-ITNLFDFLRSMYSLL 501

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G     +R  + P       +F+    T +      K  +D    +E     ++      
Sbjct: 502 GFTYK-LRLSTRP------DKFMGERATWDRAEDMLKVALDEFAATEGGVAWEL------ 548

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-------------- 294
            E   A Y    D+   K+ D L    + +   ++      FG +Y              
Sbjct: 549 NEGDGAFYGPKIDI---KILDCLNREWQCATIQLDFQLPINFGLEYVTADSAAKTKEDAA 605

Query: 295 -------SLPMSATFK-----------GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                  +    A  +                       S  +   R    +IE      
Sbjct: 606 IKGPEVKAKEPEAVVESAAAAAAPAAADGKEPAKKQLRMSKPLTWKRPPRILIEHFGGKW 665

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            +                        +  E++       G  V  D  GE +  +   A 
Sbjct: 666 PMWLSPRQIQIIPVGR-------GFFEYAEEVQKIFKDAGFWVDVDLSGETLQKKVRRAQ 718

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNN 445
           L  +    IVG + +   +V +++R     +D    + + E I        + 
Sbjct: 719 LAQYNFVFIVGDEEMKGRQVNVRYRDDTSSQDRGKPVDVNEAITKLKELRDSR 771


>gi|237844903|ref|XP_002371749.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
 gi|211969413|gb|EEB04609.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
          Length = 844

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 83/466 (17%), Positives = 148/466 (31%), Gaps = 65/466 (13%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD  +    L L        S G   WLP G K  + +   +REE    G  E+ 
Sbjct: 390 EEAKKRDHRVLGQNLHLF-FFDTNVSPGSCFWLPDGAKVYNKLCMFMREEYRFRGFQEVI 448

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + S DLW  SG Y +Y + M  L D   K     P +      +F+    SYR LP 
Sbjct: 449 SPNIFSCDLWKVSGHYQNYKENM-YLFDVEGKEWGLKPMNCPGHCIMFKHLAPSYRQLPL 507

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +  +            ++ + G
Sbjct: 508 RLADFGVLHRNELSGSLTGLTRVRRFQQDDAHIFCRLDQVKEE-VADALNFLFFVYDQFG 566

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F +   T   +    +   D    +     ++      + 
Sbjct: 567 FS------------------FELFLSTRPKKALGERAVWDSAEAALKAALEETGRPWQLN 608

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATFKGA-- 305
               A Y    D+    L+D+L    +     ++      F    +      A  +    
Sbjct: 609 PGDGAFYGPKIDIR---LWDALKRPHQCGTIQLDFQLPIRFNLQYRTQDEAVAGARDKAK 665

Query: 306 -----------------------------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                                         G    V +    +G++  + AV+     GK
Sbjct: 666 EDKETGEKRTDSEHEQKEEEAFGVELPLRPGMARPVIIHRAILGSIERMCAVVIEHTGGK 725

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
              W   ++P +  ++ I        D    +   L   G +V  D     +  +   A 
Sbjct: 726 LPFW---LSPKQCIVLPISDK---VNDYAASVRDVLHSCGYEVGLDVSNNTVNKKIREAQ 779

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHR 441
           L  +   ++VG K  +D  V ++ R     ++ +S+E+++     +
Sbjct: 780 LQQWNYLLVVGEKERADKTVTVRDRADPEHQKVLSMEDLLTLFEKQ 825


>gi|315444753|ref|YP_004077632.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Mycobacterium
           sp. Spyr1]
 gi|315263056|gb|ADT99797.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Mycobacterium
           sp. Spyr1]
          Length = 695

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 64/450 (14%), Positives = 133/450 (29%), Gaps = 49/450 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 256 IEEAQRRDHRKLGVELDLFS-FPDELGSGLPVFHPKGGVVRRELEEYSRRKHIEAGYEFV 314

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDI 117
           + P +    L++ SG  + Y   M                 +  +     P +  +   I
Sbjct: 315 NTPHITKEQLYITSGHLEWYADGMFPPMQIDAEYNEDGTVRKPGQDYYLKPMNCPMHHLI 374

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +RS  +SYR LP   ++    +R E      G+ R R     DA+ +    E       +
Sbjct: 375 YRSRGRSYRELPLRLFEFGSVYRYEKSGVIHGLTRVRGMTQDDAHIYCTREEMRDEL-AR 433

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +    GL    +   +                    +   S D  +    +  
Sbjct: 434 LLQFVLDLLADYGLDDFYLELST----------------KDPDKFVGSDDLWEEATETLR 477

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              +             A Y       + ++ D+L  N ++S   ++    F    ++  
Sbjct: 478 EVAESSGLALVPDPGGAAFYGPKI---SVQVRDALGRNWQMSTIQLD----FNMPDRF-- 528

Query: 297 PMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +  +DG       +     G++     V+   + G   +W   V    I +    
Sbjct: 529 --ELEYTSSDGTRRRPVLIHRALFGSIERFFGVLTEHYAGAFPVWLAPVQVVGIPVAVAH 586

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           A         + + A L + G  V  D   +++  +         P  ++ G K V    
Sbjct: 587 AG------YLDGVAAELRRRGIRVEVDASDDRMAKKIVNHTNQKVPFMLLAGDKDVEAGA 640

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  +         +  ++ +       +  
Sbjct: 641 VSFRFGDRTQINGVPRDQAVEAIVDWVNRR 670


>gi|87302633|ref|ZP_01085450.1| prolyl-tRNA synthetase [Synechococcus sp. WH 5701]
 gi|87282977|gb|EAQ74934.1| prolyl-tRNA synthetase [Synechococcus sp. WH 5701]
          Length = 610

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 110/241 (45%), Positives = 154/241 (63%), Gaps = 4/241 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L+++P +AEI SHKL+LR G + + + G+Y++LPL  + L  ++AI+R+E
Sbjct: 1   MRVSRLMLVTLRDDPAEAEIPSHKLLLRGGYMRRVASGVYAYLPLLWRVLSKISAIVRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            + TGA+E  +P LQ A LW  SGR+  Y      M  L DR ++++  GPTHEEV+T +
Sbjct: 61  MDATGALETLLPALQPASLWERSGRWQGYTAGEGIMFHLVDRQERSLGLGPTHEEVITAL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF       + +Y +M
Sbjct: 121 AADLLRSYRQLPVTLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEADLRLTYQRM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y RIF R GL+++ + A+SG IGG  S EF+V AD GE  +  S D   +    E  
Sbjct: 181 DQAYRRIFSRCGLRTVAVEADSGAIGGSASQEFMVTADAGEDLILSSADGR-YAANQERA 239

Query: 238 D 238
            
Sbjct: 240 C 240



 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/210 (31%), Positives = 108/210 (51%), Gaps = 4/210 (1%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSL 296
            D   + +      A     +D+ + +  +     P  +  ++RGIEVGHIF  G KYS 
Sbjct: 393 PDTHLVGARWPALGAGLPGVADLRSAQPGERCLQDPSQRLEASRGIEVGHIFQLGRKYSQ 452

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            + ATF    G D  + MG YGIG  R+  A +E  HD +GI WP ++APF++ ++   A
Sbjct: 453 ALEATFTNEQGLDEPLWMGCYGIGVSRLAQAAVEQHHDQQGICWPVAIAPFEVIVLVASA 512

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D V     E+++  L + G +V  DD  E+ G +F  ADL+G P +V+VG +  + ++V
Sbjct: 513 QDPVQVALGEQLHDELEQAGLEVLLDDRSERAGVKFKDADLIGIPWRVVVG-RGAASAQV 571

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           E+  R  G + D++   V+       +  R
Sbjct: 572 ELVERAGGAKRDVAAGAVVALLQDHIAAAR 601


>gi|78185232|ref|YP_377667.1| prolyl-tRNA synthetase [Synechococcus sp. CC9902]
 gi|114152270|sp|Q3AWR9|SYP_SYNS9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78169526|gb|ABB26623.1| Prolyl-tRNA synthetase [Synechococcus sp. CC9902]
          Length = 593

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 109/240 (45%), Positives = 147/240 (61%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +AEIASH+L+LR G I +   GIY +LPL  K +  + AI+R+E
Sbjct: 1   MRVSRLLLVTLRDVPAEAEIASHQLLLRGGYIRRIGSGIYGYLPLMWKVIQRITAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA E  +P L  A+LW  SGR+  Y      M  L DR  + +  GPTHEEV+T +
Sbjct: 61  LNTAGAQETLLPQLHPAELWQRSGRWQGYTAGEGIMFHLEDRQGRELGLGPTHEEVVTSL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SY+ LP   YQ+Q KFRDE+RPRFG+MR REF+MKDAYSF       +++Y +M
Sbjct: 121 AGELLQSYKQLPVNLYQVQTKFRDEIRPRFGLMRGREFIMKDAYSFHANEADLQNTYLEM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y RIF R GL ++P+ A+SG IGG  S EF+V AD GE  +  S D   +    E  
Sbjct: 181 DQAYRRIFERCGLAAVPVDADSGAIGGAASQEFMVTADAGEDLILLSDDGT-YAANQEKA 239



 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 63/176 (35%), Positives = 88/176 (50%), Gaps = 4/176 (2%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           PE   +  RGIEVGHIF  G KYS  M + F    GK  +  MG YGIG  R+  A +E 
Sbjct: 422 PEAHLIEKRGIEVGHIFQLGRKYSEAMDSRFTNEAGKTEHFWMGCYGIGISRLAQAAVEQ 481

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            HD  GI WP ++AP++  ++     DQ   +  E +Y +L   G D  +DD  E+ G +
Sbjct: 482 HHDDAGICWPAAIAPYEAIVVVANMQDQTQAELGESLYKQLLAAGVDALFDDRKERAGVK 541

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           F  ADL+G P +V+VG +  SD  VE+  R     + +   +            RP
Sbjct: 542 FKDADLIGIPWRVVVG-RDASDGVVELVERANRAVQKLPHADA---LKELLRTLRP 593


>gi|311897171|dbj|BAJ29579.1| putative prolyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 586

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 114/285 (40%), Positives = 158/285 (55%), Gaps = 3/285 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ ++P L+E+P DA+ ASH+L++R G + Q + G YS LPL  +    + A++REE
Sbjct: 1   MRWSQLYVPTLREDPADADAASHRLLVRAGYVRQLAAGHYSLLPLAARVRARIVAVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA E  +P L  A+LW  +GR++S G+EM RL DR       G THEEV   +   
Sbjct: 61  MERIGAQEFLLPALHPAELWRRTGRWESMGEEMFRLTDRKGAEQALGMTHEEVFAHLAE- 119

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP T+YQ Q KFRDE RPR G++R REF MKD+YSFDL   G   S+    ++
Sbjct: 120 ELRSYRQLPQTWYQFQTKFRDEARPRSGLLRVREFTMKDSYSFDLDEAGMARSFEAHRLA 179

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDF 239
           YLRIF RLGL +  +RA SG +GG  S EF+  +  GE  V  C             +  
Sbjct: 180 YLRIFERLGLPAFGVRASSGAMGGSGSVEFMSPSAAGEDLVVRCPGCGYAANTEKALSAL 239

Query: 240 DDIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVSARGIE 283
             +       E+   A     +D  ++    ++ E     ARGIE
Sbjct: 240 PAVADPAERTERTGPAEQTERTDRSDQAGTFAVEEFATPGARGIE 284



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 2/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                    +D+      +   E        R IEVGHIF  G +Y+  +     G  G+
Sbjct: 392 GRDVRVTRWADLREVTAGEPCAECGAALEVLRTIEVGHIFQLGRRYTEALGVAVAGPAGE 451

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                MGSYGIG  R++AA++E+ HD +GI WP +VAPF + L  +        +A E++
Sbjct: 452 RVVPLMGSYGIGVERLLAALVEAHHDERGIRWPAAVAPFDLVLTVLPDRGGAVAEAAERL 511

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L   G  V  DD  E+ G +FA A+L+G P ++ +G++ ++    E+  R  G   +
Sbjct: 512 CGELGAAGVRVLLDDRAERPGVKFADAELIGVPWRLTLGARGLAAGTAELTARADGSTRE 571

Query: 429 MSLEEVINYASHR 441
           + L+  +      
Sbjct: 572 LGLDAAVPELRAL 584


>gi|83764551|dbj|BAE54695.1| unnamed protein product [Aspergillus oryzae]
          Length = 717

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 78/461 (16%), Positives = 142/461 (30%), Gaps = 41/461 (8%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ +  L  L+E   R+      +  L      + S G    LP G K  + +  ++R E
Sbjct: 277 KQMQEHLKFLEEAEKRNHVKIGKEQELF--FFDEVSPGCPFLLPNGTKIFNALQTLLRSE 334

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W  SG +  Y  +M +L D   +     P +      +F  
Sbjct: 335 YRKRGYQEVQTPNMYDVGIWKTSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHFVLFGH 393

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    + +      +F 
Sbjct: 394 RERSYRELPLRLADFGVLHRNEASGALSGLTRVRKFQQDDTHIFCTQDQITSE-IEGLFD 452

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G     ++  + P                  +     +  ++         
Sbjct: 453 FLQSIYGLFGFTF-KLKLSTRP-----------------EKYLGELETWNYAEEQLKAAM 494

Query: 240 DDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                 +  + E   A Y    D+    + D+L    + +   ++      F  +Y    
Sbjct: 495 TKFKGDDWTIDEGDGAFYGPKIDI---TIADALKREFQCATIQLDYQAPINFKLEYMSNE 551

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW---------PDSVAPFKI 349
            A    A  +    +  S   G  R    VI  +  G    +                  
Sbjct: 552 KADKSQAAAESAEGENKSSEPGPGRARPVVIHRAIIGSFERFLGILTEHFGGKWPFWISP 611

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
             I I        D  E++   L     +V  D  G  +  +     L  +    +VG++
Sbjct: 612 RQILIVPVMPAVNDYVEELQTILRGDKLNVDIDISGNTMQKKIRTGQLAQYNFIFVVGAQ 671

Query: 410 FVSDSKVEIKHRL---TGIREDM-SLEEVINYASHRFSNNR 446
                 V I++R    T  +  M  LEE            R
Sbjct: 672 EKEARTVNIRNRDDPATQKQGVMIPLEEAREKLRALRKERR 712


>gi|73919784|sp|Q8FPJ3|SYT_COREF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 694

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 60/458 (13%), Positives = 133/458 (29%), Gaps = 49/458 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   + +   RD      +L L +    +   G+  + P G      +    R   
Sbjct: 258 KLDEYQTMLAEAEKRDHRRLGTELDLFS-FPDEIGSGLPVFHPNGAIVRLEMEEHSRRRH 316

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL------------ADRNDKAMIYGPT 109
            + G   ++ P    +DL+ +SG    Y + M                 +  +     P 
Sbjct: 317 IQAGYSFVNTPHATKSDLFEKSGHLGFYKEGMFPPLQLDAEYDAEGNQTKPGQDYYLKPM 376

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPE 168
           +  +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +
Sbjct: 377 NCPMHNLIFDSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYC-TED 435

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             +     +    + +    GL    +   +                    +     +  
Sbjct: 436 QLEEELTSVLEFIISLLKDYGLDDFYLELST----------------KDPKKFVGDDEIW 479

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +           +         +  A Y       + +  D++    ++S   ++    F
Sbjct: 480 ERSTEILQRVATNSGLDLVPDPEGAAFYGPKI---SVQAKDAIGRTWQMSTVQLD----F 532

Query: 289 YFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
               ++       +   DG       +     G++     V+   + G    W       
Sbjct: 533 NLPERF----ELEYTSPDGSKQRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVV 588

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
            I +       +      EK+  +L   G     D   +++  +         P  ++ G
Sbjct: 589 GIPVA------EDFIPHLEKVVDKLRARGFRAEVDTSDDRMQKKIRTHTTGKIPFMLLAG 642

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            + V    V  +         + ++E +   S      
Sbjct: 643 GRDVEADAVSFRFLDGTQVNGVPVDEAVELISTWILER 680


>gi|148508028|gb|ABQ75826.1| threonine--tRNA ligase [uncultured haloarchaeon]
          Length = 643

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 149/444 (33%), Gaps = 44/444 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y     +   RD      +L L +  I      G+  + P G+K L+ +++         
Sbjct: 231 YLERREKAKERDHRKIGQELELFS--IPDVTGPGLPLYHPNGKKILNELSSYAESLNVDA 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P L   +LW  SG Y++Y  +M  L D +D      P +      IF     S
Sbjct: 289 GYEPVETPHLFKTELWKVSGHYENYVDDMF-LLDVSDDEYGLKPMNCPGHATIFNQQSWS 347

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  +Y+    +R E R    G+ R   F + D + F  TPE  +    ++  S   
Sbjct: 348 YRDLPVRYYEDGKVYRKEQRGELSGLSRVWAFTIDDGHLFC-TPEQIEQEVTQVIESIQE 406

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           + +  GL +    A + P     S E    A++                    T      
Sbjct: 407 VLNTFGLDAEVALA-TRPEKSVGSDEIWQQAES-----------------QLETVLTSRG 448

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               +     A Y    D   E   D+L  N       ++    F    ++      ++ 
Sbjct: 449 INYDLEPGDGAFYGPKIDFAFE---DALGRNWDGPTVQLD----FNMPDRFD----LSYT 497

Query: 304 GADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G D +DH    +     G+      V+    DGK  +W           I I        
Sbjct: 498 GEDNQDHQPVMIHRALYGSYERFFMVLIEHFDGKFPLW------LAPEQIRILPISDDQL 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++  +       V  DD    +  +         P  +I+GS       + ++ R 
Sbjct: 552 GYAHRVKNQFDD--FRVEIDDQTRTLSRKIRAGQDDRIPYMIILGSDEEEAGTISVRDRF 609

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
              ++D++++   ++ +    N +
Sbjct: 610 ENEKQDVNIDAFRSHVNAERRNRQ 633


>gi|198425233|ref|XP_002123203.1| PREDICTED: similar to novel prtoein similar to vertebrate
           threonyl-tRNA synthetase (TARS, zgc:92586) [Ciona
           intestinalis]
          Length = 630

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/450 (15%), Positives = 145/450 (32%), Gaps = 43/450 (9%)

Query: 1   MRRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           M++   +    +E   RD      +  L     H+ S G   + P G    + + + I+E
Sbjct: 203 MKQ---WQKFQEEAKQRDHRKIGKEQELF--FFHELSPGSCFFFPRGAFIYNTLISFIKE 257

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E  + G  E+  P + ++ LW+ SG +  Y + M   +   +      P +      +F 
Sbjct: 258 EYRKRGFEEVVSPNIYNSKLWMTSGHWQHYDQNMFSFSVEKET-FALKPMNCPGHCLMFS 316

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +S+R LP  F    +  R+EL     G+ R R F   DA+ F    +          
Sbjct: 317 HRSRSWRELPIRFADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRPEQIKDEM-RGAL 375

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++   G                    F +   T   +        D         
Sbjct: 376 NFLKAVYDTFGFS------------------FKLFLSTRPEKFLGDPGMWDDAEKQLEEC 417

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             +      +     A Y    D+   ++ D+L    + +   ++    F    +++L  
Sbjct: 418 LVEFDHPWKLNPGDGAFYGPKIDI---QIMDALRRPHQCATIQLD----FQLPIRFNLNY 470

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                    +   +     G    R++A + E+      +                    
Sbjct: 471 VTGEGDEKKRPVIIHRAILGS-VERMIAILTENYGGKWPLWLSPRQVMILAV-------S 522

Query: 359 QVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +  E +  R+ + G  V  + D G  +  +   A L  +   ++VG K  ++  V 
Sbjct: 523 SKYDEYAESVRLRMHEAGIQVDLEKDPGLTLNKKIRTAQLEQYNFILVVGEKEETNGTVN 582

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           I+ R   +  +++++ VI+   H       
Sbjct: 583 IRTRDNKVHGELTVQAVIDRLLHLVKIRHQ 612


>gi|57167588|ref|ZP_00366728.1| prolyl-tRNA synthetase [Campylobacter coli RM2228]
 gi|57020710|gb|EAL57374.1| prolyl-tRNA synthetase [Campylobacter coli RM2228]
          Length = 569

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 109/271 (40%), Positives = 161/271 (59%), Gaps = 4/271 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK + P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 2   MKFSKLYAPSLKEAPKDATLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIRTIVKEE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 62  MDKAGAQEVNLSFVTPATLWQESGRYNVFGKELLRFKDRKENDFVLGPTHEEAMLSLVKN 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     ++ M+ +
Sbjct: 122 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLTREFDLMYKT 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  R+GL+   + A+SG IGG  S EF+VLA  GE  +   ++  D+    E     
Sbjct: 182 YSQILQRMGLEFRAVDADSGAIGGSGSKEFMVLAKNGEDDILICENC-DYAANVEAAI-- 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +     E+  A YA+     + K  ++L
Sbjct: 239 -RANKTCEEERPEANYASKFHTPDVKTIEAL 268



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 105/224 (46%), Gaps = 6/224 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++D  +  E          +  +        +     D+   K  D   +   K   +
Sbjct: 347 DFYLDKELEGEKQMIMGANEKDYHLIGIDVVNLSKDRFKDLAEVKENDCCAKCGGKLKLS 406

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD KG I
Sbjct: 407 KGIEVGHIFKLGQKYSKAMNANFLDENGKSKPFYMGCYGIGVSRLLAVAIEANHDEKGCI 466

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  LS  G +V  DD  E+ G +    +L+G
Sbjct: 467 WNKTLAPFTLEIIISNIKDEKSLEFATKLYEDLSNAGIEVLLDDRNERFGVKMNDFELMG 526

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           FP  ++VG K +   ++E   R T  ++ +S +E  ++      
Sbjct: 527 FPYALVVG-KGLEKDELEFIDRKTLEKKIISSKEAFDFIKKSIE 569


>gi|259507396|ref|ZP_05750296.1| threonine--tRNA ligase [Corynebacterium efficiens YS-314]
 gi|259165021|gb|EEW49575.1| threonine--tRNA ligase [Corynebacterium efficiens YS-314]
          Length = 699

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 60/458 (13%), Positives = 133/458 (29%), Gaps = 49/458 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  +Y   + +   RD      +L L +    +   G+  + P G      +    R   
Sbjct: 263 KLDEYQTMLAEAEKRDHRRLGTELDLFS-FPDEIGSGLPVFHPNGAIVRLEMEEHSRRRH 321

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL------------ADRNDKAMIYGPT 109
            + G   ++ P    +DL+ +SG    Y + M                 +  +     P 
Sbjct: 322 IQAGYSFVNTPHATKSDLFEKSGHLGFYKEGMFPPLQLDAEYDAEGNQTKPGQDYYLKPM 381

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPE 168
           +  +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +
Sbjct: 382 NCPMHNLIFDSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYC-TED 440

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             +     +    + +    GL    +   +                    +     +  
Sbjct: 441 QLEEELTSVLEFIISLLKDYGLDDFYLELST----------------KDPKKFVGDDEIW 484

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +           +         +  A Y       + +  D++    ++S   ++    F
Sbjct: 485 ERSTEILQRVATNSGLDLVPDPEGAAFYGPKI---SVQAKDAIGRTWQMSTVQLD----F 537

Query: 289 YFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
               ++       +   DG       +     G++     V+   + G    W       
Sbjct: 538 NLPERF----ELEYTSPDGSKQRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVV 593

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
            I +       +      EK+  +L   G     D   +++  +         P  ++ G
Sbjct: 594 GIPVA------EDFIPHLEKVVDKLRARGFRAEVDTSDDRMQKKIRTHTTGKIPFMLLAG 647

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            + V    V  +         + ++E +   S      
Sbjct: 648 GRDVEADAVSFRFLDGTQVNGVPVDEAVELISTWILER 685


>gi|296271847|ref|YP_003654478.1| threonyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
 gi|296096022|gb|ADG91972.1| threonyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
          Length = 602

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/437 (15%), Positives = 147/437 (33%), Gaps = 41/437 (9%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++ +L+E   RD      +L L T        G+  WLP G +    +  I+ +     G
Sbjct: 197 YVKMLEEAKKRDHRKLGTELELFT-FSDDVGAGLPMWLPNGARLRSKLEHILYKAHRVRG 255

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              +  P +  + +W  SG   +Y + M      +++     P +      IF++ + SY
Sbjct: 256 YEPVRGPEILKSKMWDISGHNANYSQNMYYTT-IDEQQYAMKPMNCVGHIQIFKNSLVSY 314

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           ++LP   ++  +  R E+     G+ R REF   D++ F    +     +  +       
Sbjct: 315 KDLPKKLFEYGVVHRHEMSGAMHGLFRVREFTQDDSHIFCTQDQMKDVIFEVL------- 367

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                        ++     D  +E  V   T   +      F +          D+   
Sbjct: 368 ----------EFVDAVLKLFDFKYEIEV--STKPEKAIGDDMFWEKTTKGIMDALDEKNI 415

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I E   A Y    D+   K+ D++    +     +++     F         A +  
Sbjct: 416 TYGIDEGGGAFYGPKIDI---KILDAIGRKWQCGTVQVDMNLPSRF--------EAEYIN 464

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             G+      +    +G+      ++     G+            + +           +
Sbjct: 465 EKGEKEQPVMIHRAILGSFERFIGILTEHCAGEFPFVIAPTQVIFVPIA------DTHNE 518

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++   L +   D    +M E +  +  +A+    P+ V++G + V +  V ++ R  
Sbjct: 519 YAKELQNELLQNSMDSKIFNMNESLNKRIRMAEKQRVPMIVVIGDEEVENKTVALRDRRK 578

Query: 424 GIREDMSLEEVINYASH 440
             + +M   E I   + 
Sbjct: 579 REQSNMGKTEFIQMLNE 595


>gi|15674109|ref|NP_268284.1| prolyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|81856528|sp|Q9CDT4|SYP_LACLA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|12725184|gb|AAK06225.1|AE006441_3 prolyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
          Length = 616

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 111/282 (39%), Positives = 163/282 (57%), Gaps = 11/282 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L++R G + Q S GIY++LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLMRAGYVRQVSAGIYAYLPLANRVLEKLKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+  P+L +ADLW ESGRYD+YG+++ +L +R++   I GPTHEE MT + R 
Sbjct: 61  FDEIGAVELLAPSLLTADLWRESGRYDTYGEDLYKLKNRDNSDFILGPTHEETMTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPR+G++R REFLMKD YS+    +    +YN    +
Sbjct: 121 EITSYKKLPLNVYQIAPKFRDEKRPRYGLLRGREFLMKDGYSYHADQDSLDETYNDYKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT----GETQVFCSKDFMDFPIPS-- 234
           Y +IF R GL   P+ A++G +GG  S EFI + D      +  V          IP   
Sbjct: 181 YEKIFERAGLNFKPIIADAGAMGGKDSQEFIAITDDRINLEKWLVLSKNITSIEEIPESV 240

Query: 235 -----ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                E      I   ++IV      YAA  ++ + +   ++
Sbjct: 241 LSEIKEELGKWLIAGEDTIVYAEGGDYAANIEMASSQFEPNV 282



 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 14/188 (7%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           NE             ARGIE+GHIF  GT+Y+  M+A    A+G+   + MG YGIG  R
Sbjct: 425 NEGEISPDGRGTLKFARGIEIGHIFKLGTRYTEAMNANILDANGRSIPMLMGCYGIGVSR 484

Query: 324 VVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +++A++E                    I +P  +APF I L+ +   D+   +   ++  
Sbjct: 485 LLSAILEQFARIYVEKTPREEFKFSWSINFPKELAPFDIHLVPVNVKDEAAMELTSELEE 544

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G  V  DD  E+ G +FA +DL+G P++V +G K  ++  VE+K R TG   +++
Sbjct: 545 KLRGKGYQVLVDDRNERAGVKFADSDLIGLPVRVTIGKK-AAEGVVEVKIRATGEVVEIN 603

Query: 431 LEEVINYA 438
            +E++N  
Sbjct: 604 KDELVNTI 611


>gi|118471368|ref|YP_887250.1| threonyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
 gi|166225464|sp|A0QWG2|SYT_MYCS2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118172655|gb|ABK73551.1| threonyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
          Length = 684

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 64/449 (14%), Positives = 134/449 (29%), Gaps = 47/449 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 254 IEEAQRRDHRKLGVELDLFS-FPDELGSGLPVFHPRGGVVRRELEDYSRRKHLEAGYEFV 312

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDI 117
           + P +    L+V SG  + Y   M                 +  +     P +  +   I
Sbjct: 313 NTPHITKEQLYVTSGHLEWYADGMFPAMHIDAEYDADGQVRKPGQNYYLKPMNCPMHHLI 372

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FRS  +SYR LP   ++    +R E      G+ R R     DA+ +    +       +
Sbjct: 373 FRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYTTREQMRDEL-TR 431

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +    GL    +   +                    +   S +  +    +  
Sbjct: 432 LLEFVLSLLKDYGLDDYYLELST----------------KDPEKYVGSDEIWEEATETLR 475

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              +             A Y       + ++ D+L  + ++S   ++    F    ++ L
Sbjct: 476 EVAEASGLDLVPDPGGAAFYGPKI---SVQVKDALGRSWQMSTIQLD----FNMPDRFEL 528

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             +A       +   V +     G++     V+   + G    W   V    I +     
Sbjct: 529 EYTAA---DGSRRRPVLIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPVA---- 581

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                    E++ A+L   G  V  D   +++  +      +  P  ++ G K      V
Sbjct: 582 --DAHTPYLEEVAAQLKSRGVRVEVDSSDDRMAKKIVNHTNMKVPFMLLAGDKDAEAGAV 639

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +         +  +E +       ++ 
Sbjct: 640 SFRFGDRTQINGVPRDEAVEMIVRWIADR 668


>gi|301767961|ref|XP_002919352.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial-like [Ailuropoda
           melanoleuca]
          Length = 718

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 145/451 (32%), Gaps = 57/451 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD         L     H+ S G   +LP G +  + + A IR E  R G  E+  PTL 
Sbjct: 300 RDHRRIGKAQELF--FFHELSPGSCFFLPRGTRVYNTLVAFIRAEYTRRGFSEVKTPTLF 357

Query: 76  SADLWVESGRYDSYGKEMLR----------------LADRNDKAMIYGPTHEEVMTDIFR 119
           SA LW  SG ++ Y ++M                          +   P +      +F 
Sbjct: 358 SAKLWELSGHWEHYQEDMFTLQPPGSDRLASSPSDHPTSHPTDTLALKPMNCPAHCLMFA 417

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +S+R LP          R E      G+ R R F   DA+ F   P+  +       
Sbjct: 418 HRPRSWRELPLRLADFGALHRAEASGSLGGLTRLRCFQQDDAHIFCA-PDQLEAEIRSCL 476

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++  LG         + P G                         D         
Sbjct: 477 DFLRSVYAVLGFSFRLA-LSTRPSGF-----------------LGEPCVWDQAEQVLQRA 518

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            ++      +     A Y    DVH   L D+L    +     ++    F    ++    
Sbjct: 519 LEEFGEPWDLNPGDGAFYGPKIDVH---LRDALGRPHQCGTIQLD----FQLPLRF---- 567

Query: 299 SATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +KG  G       +    +G++  +  V+    +  G  WP  ++PF++ +I +   
Sbjct: 568 GLQYKGQAGVPERPVLIHRAVLGSVERMLGVLA---ESCGGKWPLWLSPFQVVVIPVGTE 624

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   +   ++  RL   G     D D+G  +  +   A L  +  Q +VG K  S   V
Sbjct: 625 QE---EYAREVQQRLQAAGLVCDLDADLGLTLSRRVRRAQLTHYNFQFVVGQKEQSKRTV 681

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            I+ R      +  L E +       +   P
Sbjct: 682 NIRTRDNHRLGERDLTEAVQRLLELQNTRVP 712


>gi|281352894|gb|EFB28478.1| hypothetical protein PANDA_008019 [Ailuropoda melanoleuca]
          Length = 718

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 145/451 (32%), Gaps = 57/451 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD         L     H+ S G   +LP G +  + + A IR E  R G  E+  PTL 
Sbjct: 300 RDHRRIGKAQELF--FFHELSPGSCFFLPRGTRVYNTLVAFIRAEYTRRGFSEVKTPTLF 357

Query: 76  SADLWVESGRYDSYGKEMLR----------------LADRNDKAMIYGPTHEEVMTDIFR 119
           SA LW  SG ++ Y ++M                          +   P +      +F 
Sbjct: 358 SAKLWELSGHWEHYQEDMFTLQPPGSDRLASSPSDHPTSHPTDTLALKPMNCPAHCLMFA 417

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +S+R LP          R E      G+ R R F   DA+ F   P+  +       
Sbjct: 418 HRPRSWRELPLRLADFGALHRAEASGSLGGLTRLRCFQQDDAHIFCA-PDQLEAEIRSCL 476

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++  LG         + P G                         D         
Sbjct: 477 DFLRSVYAVLGFSFRLA-LSTRPSGF-----------------LGEPCVWDQAEQVLQRA 518

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            ++      +     A Y    DVH   L D+L    +     ++    F    ++    
Sbjct: 519 LEEFGEPWDLNPGDGAFYGPKIDVH---LRDALGRPHQCGTIQLD----FQLPLRF---- 567

Query: 299 SATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +KG  G       +    +G++  +  V+    +  G  WP  ++PF++ +I +   
Sbjct: 568 GLQYKGQAGVPERPVLIHRAVLGSVERMLGVLA---ESCGGKWPLWLSPFQVVVIPVGTE 624

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   +   ++  RL   G     D D+G  +  +   A L  +  Q +VG K  S   V
Sbjct: 625 QE---EYAREVQQRLQAAGLVCDLDADLGLTLSRRVRRAQLTHYNFQFVVGQKEQSKRTV 681

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            I+ R      +  L E +       +   P
Sbjct: 682 NIRTRDNHRLGERDLTEAVQRLLELQNTRVP 712


>gi|195953061|ref|YP_002121351.1| prolyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
 gi|226701299|sp|B4U8B2|SYP_HYDS0 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|195932673|gb|ACG57373.1| prolyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
          Length = 565

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 100/227 (44%), Positives = 145/227 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFL   +E P + E ASH+ + + G I Q + GIY   P+  + L  +  I+R+E
Sbjct: 1   MRWSRYFLYTTKEEPSETEAASHRFLTKAGFIKQVASGIYELTPIAFRVLKKIENIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+ +  L  A+LW E+GR+D YG E+ +L DR+D+    GPTHEE +TD+ R 
Sbjct: 61  MDKAGAQELLLTILNPAELWKETGRWDYYGNELFKLKDRSDRDYCLGPTHEEEITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQI  KFRDE RPR+G++R REF+MKDAYSFD   E +K+SY+ M  +
Sbjct: 121 TVRSYKQLPLNLYQIHTKFRDEKRPRYGLIRGREFIMKDAYSFDTDEESAKNSYDIMVKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y  IF RL L  + ++A+ G IGG  SHEF+ +   GE  +   ++ 
Sbjct: 181 YKNIFKRLNLNILMVKADVGQIGGKSSHEFVAITKYGEALIAYCENC 227



 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 3/221 (1%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGI 282
           +  +D  + + +         +   +     +    DV   +  D  PE       A+G+
Sbjct: 342 EIIVDNSLYNASNMVVAFNKPHYHYKNANIDFENFVDVAQVEENDPCPECGSPLKVAQGL 401

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           E+GH F  GT+YSLPM A F   DG +  V MG YGIG  R++AA++E  HD KGI WP 
Sbjct: 402 ELGHTFLLGTRYSLPMKAFFTDKDGVEKPVVMGCYGIGISRLIAALVEQYHDEKGIKWPL 461

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            VAPF++ +  +   D +     E +Y  L++ G +V +DD     G +F  ADL+G P 
Sbjct: 462 PVAPFQVLISCVNTSDDIQYSTSEHLYKSLTQEGIEVLFDDRDVSPGVKFNDADLIGIPY 521

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +++VG K   D  VE+  R T    D+ +++V++Y     +
Sbjct: 522 RIVVGKK-AKDGLVEVVDRHTLKAVDVPIDKVLDYIKDILN 561


>gi|313126275|ref|YP_004036545.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Halogeometricum
           borinquense DSM 11551]
 gi|312292640|gb|ADQ67100.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Halogeometricum
           borinquense DSM 11551]
          Length = 641

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/439 (15%), Positives = 134/439 (30%), Gaps = 46/439 (10%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +   RD      ++ L +  I +    G+  + P G++ L  ++              + 
Sbjct: 237 EAEERDHRKIGREMDLFS--IPEVTGPGLPLYHPNGKRILSELSEFAESLNLDADYEPVE 294

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P L   +LW +SG YD+Y  +M  L D ND+     P +      IF  +  SYR+LP 
Sbjct: 295 TPHLFRTELWKKSGHYDNYVDDMF-LLDVNDEEYGLKPMNCPGHATIFDQNSWSYRDLPV 353

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            +++    +R E R    G+ R   F + D + F    +  +     M   Y        
Sbjct: 354 RYFEDGKVYRKEQRGELSGLSRVWSFTIDDGHLFCRPEQIEQEIRQVMNSIYEV------ 407

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                   ++  +      E  V   T   +   S +  +       +  ++      + 
Sbjct: 408 -------LDTFGL------EAHVALATRPEKSVGSDEIWEQSESQLRSVLENQNIDYDLE 454

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D   E   D+L          ++                 T+ G D ++
Sbjct: 455 PGDGAFYGPKIDFSFE---DALGRKWDGPTVQVDFNMP--------ERFDLTYTGEDNEE 503

Query: 310 HYV-QMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           H    +     G+  R    +IE  +                                 +
Sbjct: 504 HRPVMIHRALYGSYERFFMVLIEHFNGKFPFWLAPEQVRILPI-------SDDQLGYAHR 556

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L      V  +D    +G +         P  +IVG        + ++ R     +
Sbjct: 557 VKNELGD--FRVSVEDRSWTLGRKIREGQEDNVPYMLIVGENEEESGTISVRDRQEREEQ 614

Query: 428 DMSLEEVINYASHRFSNNR 446
           D+S++    +    +   R
Sbjct: 615 DVSIDAFREHLEAEYDEKR 633


>gi|88807669|ref|ZP_01123181.1| prolyl-tRNA synthetase [Synechococcus sp. WH 7805]
 gi|88788883|gb|EAR20038.1| prolyl-tRNA synthetase [Synechococcus sp. WH 7805]
          Length = 598

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 110/246 (44%), Positives = 154/246 (62%), Gaps = 3/246 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEI SH+L++R G I +   GIY++LP+  + L  +NAI+R+E
Sbjct: 1   MRVSRLMLVTLRDVPADAEIPSHQLLVRGGYIRRIGAGIYAYLPMMWRVLRKINAIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  GA+E  +P LQ ADLW  SGR+  Y      M  L DR ++ +  GPTHEEV+T++
Sbjct: 61  LDSLGALETLLPQLQPADLWERSGRWQGYTAGEGIMFHLEDRQNRQLGLGPTHEEVITEL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    +  + +Y  M
Sbjct: 121 AGDLLRSYRQLPVTLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHANQDDLEGTYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y RIF R GL+++ + A+SG IGG  S E++V A+ GE  +  S D +      + T
Sbjct: 181 AAAYARIFKRCGLEAVAVDADSGAIGGAASQEYMVTAEAGEDLILTSSDGLYAANQEKAT 240

Query: 238 DFDDII 243
               I 
Sbjct: 241 SLPPIA 246



 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 2/179 (1%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     + RGIEVGHIF  G KYS  + A F  + G+   + MG YGIG  R+  A +E 
Sbjct: 421 PSQTLSACRGIEVGHIFQLGRKYSEALDARFTNSAGQQEALLMGCYGIGISRLAQAAVEQ 480

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            HD  GI WP  +APF++ ++  K  D       E +Y      G D   DD  E+ G +
Sbjct: 481 HHDDAGICWPVGIAPFQVIVVIAKMKDSNQVALGEGLYQSFLDAGIDALLDDRDERAGVK 540

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH-RFSNNRPVL 449
           F  ADL+G P +++VG +   D +VE+  R       M  ++          +  RP +
Sbjct: 541 FKDADLIGIPWRIVVG-RDAGDGEVEVVERSACKSTTMDHQKAYRQVKESILNTLRPEI 598


>gi|114600738|ref|XP_517835.2| PREDICTED: threonyl-tRNA synthetase isoform 10 [Pan troglodytes]
 gi|114600740|ref|XP_001153787.1| PREDICTED: threonyl-tRNA synthetase isoform 6 [Pan troglodytes]
 gi|114600742|ref|XP_001153971.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic isoform 9 [Pan
           troglodytes]
          Length = 723

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 147/445 (33%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 363

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 364 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 422

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 423 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 481

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 482 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 523

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 524 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 572

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 573 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 628

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K      V
Sbjct: 629 --TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTV 686

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R   +  + ++ E I      
Sbjct: 687 NIRTRDNKVHGERTISETIERLQQL 711


>gi|62897167|dbj|BAD96524.1| threonyl-tRNA synthetase variant [Homo sapiens]
          Length = 723

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 147/445 (33%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 363

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 364 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 422

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 423 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 481

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 482 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 523

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 524 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 572

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 573 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 628

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K      V
Sbjct: 629 --TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTV 686

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R   +  + ++ E I      
Sbjct: 687 NIRTRDNKVHGERTISETIERLQQL 711


>gi|38202255|ref|NP_689508.3| threonyl-tRNA synthetase, cytoplasmic [Homo sapiens]
 gi|60267755|sp|P26639|SYTC_HUMAN RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33875537|gb|AAH00517.2| Threonyl-tRNA synthetase [Homo sapiens]
 gi|119631209|gb|EAX10804.1| threonyl-tRNA synthetase, isoform CRA_b [Homo sapiens]
 gi|158258124|dbj|BAF85035.1| unnamed protein product [Homo sapiens]
 gi|168277378|dbj|BAG10667.1| threonyl-tRNA synthetase [synthetic construct]
 gi|190690713|gb|ACE87131.1| threonyl-tRNA synthetase protein [synthetic construct]
          Length = 723

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 147/445 (33%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 363

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 364 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 422

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 423 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 481

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 482 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 523

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 524 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 572

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 573 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 628

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K      V
Sbjct: 629 --TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTV 686

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R   +  + ++ E I      
Sbjct: 687 NIRTRDNKVHGERTISETIERLQQL 711


>gi|326407711|gb|ADZ64782.1| prolyl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56]
          Length = 616

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 111/282 (39%), Positives = 163/282 (57%), Gaps = 11/282 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L++R G + Q S GIY++LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLMRAGYVRQVSAGIYAYLPLANRVLEKLKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+  P+L +ADLW ESGRYD+YG+++ +L +R++   I GPTHEE MT + R 
Sbjct: 61  FDEIGAVELLAPSLLTADLWRESGRYDTYGEDLYKLKNRDNSDFILGPTHEETMTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPR+G++R REFLMKD YS+    +    +YN    +
Sbjct: 121 EITSYKKLPLNVYQIAPKFRDEKRPRYGLLRGREFLMKDGYSYHADQDSLDETYNDYKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT----GETQVFCSKDFMDFPIPS-- 234
           Y +IF R GL   P+ A++G +GG  S EFI + D      +  V          IP   
Sbjct: 181 YEKIFERAGLNFKPIIADAGAMGGKDSQEFIAITDDRINLEKWLVLSKNITSIEEIPESV 240

Query: 235 -----ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                E      I   ++IV      YAA  ++ + +   ++
Sbjct: 241 LSEIKEELGKWLIAGEDTIVYAEGGDYAANIEMASSQFEPNV 282



 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 14/188 (7%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           NE             ARGIE+GHIF  GT+Y+  M+A    A+G+   + MG YGIG  R
Sbjct: 425 NEGEISPDGRGTLKFARGIEIGHIFKLGTRYTEAMNANILDANGRSIPMLMGCYGIGVSR 484

Query: 324 VVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +++A++E                    I +P  +APF I L+ +   D+   +   ++  
Sbjct: 485 LLSAILEQFARIYVEKTPREEFKFSWSINFPKELAPFDIHLVPVNVKDEAAMELTSELEE 544

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G  V  DD  E+ G +FA +DL+G P++V +G K  ++  VE+K R TG   +++
Sbjct: 545 KLRGKGYQVLVDDRNERAGVKFADSDLIGLPVRVTIGKK-AAEGVVEVKIRATGEVVEIN 603

Query: 431 LEEVINYA 438
            +E++N  
Sbjct: 604 KDELVNTI 611


>gi|255714212|ref|XP_002553388.1| KLTH0D15620p [Lachancea thermotolerans]
 gi|238934768|emb|CAR22950.1| KLTH0D15620p [Lachancea thermotolerans]
          Length = 453

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 156/447 (34%), Gaps = 46/447 (10%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR-EEQNRTGAIEMSVPTLQS 76
            ++++ + +    M    S G   +LP G K  + +   ++ ++QN+ G  E+  P +  
Sbjct: 35  HDVSAKQQL---FMTDPVSPGSVFFLPNGTKIFNKLVNFMKLQQQNKFGFQEVITPLIYR 91

Query: 77  ADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             LW +SG +++Y ++M R+   D   +     P +      +F+   +SY  LP  +  
Sbjct: 92  KSLWEQSGHWENYKEDMFRVEGQDLQKEEYGLKPMNCPGHCMVFKRFARSYNELPLRYSD 151

Query: 135 IQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
                R+E      G+ R R+F   D + F +  +       K        + ++     
Sbjct: 152 FSPLHRNEASGALSGLTRVRKFHQDDGHIFCIPEQVESE-ITKCIKMLDLCYTKVFPLGR 210

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                     G+   ++ +   T            +          +    + SI     
Sbjct: 211 ----------GNTPTDYELRLSTRPEHYVGDVSVWNHAEAILEGILNKSGKVWSINAGDG 260

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV- 312
           A Y    DV    L D   +  +V+   ++    F    ++       +K  D       
Sbjct: 261 AFYGPKIDVL---LADHNNKQHQVATIQLD----FQLPERFD----LKYKDKDNTFKRPI 309

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +     G++    A++    D     WP  + P +  ++ +   ++        +   L
Sbjct: 310 MIHRAVFGSVERFMAMLI---DSNEGKWPFWLNPHQCMIVPLNTKNEALVHKANDLARAL 366

Query: 373 S-------------KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                             +V  DD  E  G +   A    +   ++VG+K +   K  I+
Sbjct: 367 RGEDTPADEPVKLNSFHFNVDIDDRAEPTGYRIKEAIEKNYSFLIMVGTKEIESGKYAIR 426

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R +   E ++L+E+I   S+  SN +
Sbjct: 427 TRESRDLEHLTLDEIIQKFSNLESNFK 453


>gi|154175003|ref|YP_001408388.1| prolyl-tRNA synthetase [Campylobacter curvus 525.92]
 gi|166980112|sp|A7GYU6|SYP_CAMC5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|112802606|gb|EAT99950.1| prolyl-tRNA synthetase [Campylobacter curvus 525.92]
          Length = 567

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 99/260 (38%), Positives = 143/260 (55%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK++ P  +E P+DA + SH  ++R G + Q   G+Y++LPLG+  LD +  +++EE
Sbjct: 1   MRFSKFYAPTTKEAPKDASLPSHIFLVRGGFVEQIGSGLYNFLPLGKMMLDKITKVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G +E+S   + S +LW +SGR++ +GKE+LR  DR +   +  PT+EE    + R 
Sbjct: 61  MDAAGVLEVSFSVVTSGELWKQSGRFNVFGKELLRFKDRKENDFVLSPTNEEAAVALVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG++R REF MKDAYSF       K  ++ M  +
Sbjct: 121 KVTSYKQLPLNIYQINTKFRDEARPRFGLLRGREFTMKDAYSFHANEADMKREFDLMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RLGL    + A+SG IGG  S EF+VLA  GE  + C                 
Sbjct: 181 YSKIFTRLGLNFRAVEADSGAIGGSGSKEFMVLAKNGEDDILCCDSCKYAANVEAAKRAK 240

Query: 241 DIISLNSIVEQWTAPYAATS 260
                 +     T  Y   +
Sbjct: 241 KTSDAPAPQADATKFYTPDA 260



 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 3/184 (1%)

Query: 261 DVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ + +  D  P+   K   ++GIEVGHIF  G KYS  M ATF   +GK     MG YG
Sbjct: 384 DLVSVQAGDICPKCGGKLELSKGIEVGHIFQLGYKYSSAMGATFLDENGKARPFLMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R++A ++E+SHD +G +W     PF+  ++     D+       K+Y  L  +G  
Sbjct: 444 IGVSRLIAVMVEASHDDRGCVWKKECTPFECEIVISNLKDEAGVKFATKLYENLRNLGLC 503

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +    +LLGFP  +IVG K + + +VE+  R   ++E +  +E+++  
Sbjct: 504 VLLDDRNERFGVKMNDFELLGFPYAIIVG-KGLENGEVELITRDGLVKEVVKKDEILSVL 562

Query: 439 SHRF 442
             + 
Sbjct: 563 KEKL 566


>gi|296117779|ref|ZP_06836362.1| threonine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969010|gb|EFG82252.1| threonine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 691

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 59/449 (13%), Positives = 136/449 (30%), Gaps = 47/449 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD      +L L +        G+  + P G      +    R      G   +
Sbjct: 259 MEEAEKRDHRRLGAELDLFS-FPDDLGSGLPVFHPNGGIVRTEMEEHSRRRHIEAGYSFV 317

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDI 117
           + P +   DL+  SG    Y   M                 +  +     P +  +   I
Sbjct: 318 NTPHITKQDLFERSGHLGFYKDGMFPPMHVDAEYDAEGNETKPGQDYYLKPMNCPMHNLI 377

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F +  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  +     
Sbjct: 378 FDTRGRSYRELPLRLFEFGNVYRYEKSGVIHGLTRARGFTQDDAHIYC-TEDQLEEELTS 436

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    + +    GL    +   +                        S++  +       
Sbjct: 437 VLDFIISLLQDYGLDDFYLELSTRDPNKS----------------VGSEEIWERSTAILA 480

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              +          +  A Y       + +  D++    ++S   ++    F    +++L
Sbjct: 481 RVAEKSGLELVPDPEGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNMPERFNL 533

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             +A+      K   + +     G++     V+   + G    W        I +     
Sbjct: 534 EYTAS---DGSKKQPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVVGIPV----- 585

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +      E++ A+L K G     D   +++  +         P  ++ G++    + V
Sbjct: 586 -SEDNVGHLEQVIAKLCKKGIRADVDTSDDRMQKKIRNHTTGKVPFMLLAGARDAEANAV 644

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +         + ++E +   ++  +  
Sbjct: 645 SFRFLDGSQANGIDVDEAVELIANWVAQR 673


>gi|281492788|ref|YP_003354768.1| prolyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|281376440|gb|ADA65926.1| Prolyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
          Length = 616

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 111/282 (39%), Positives = 163/282 (57%), Gaps = 11/282 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L++R G + Q S GIY++LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLMRAGYVRQVSAGIYAYLPLANRVLEKLKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+  P+L +ADLW ESGRYD+YG+++ +L +R++   I GPTHEE MT + R 
Sbjct: 61  FDEIGAVELLAPSLLTADLWRESGRYDTYGEDLYKLKNRDNSDFILGPTHEETMTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPR+G++R REFLMKD YS+    +    +YN    +
Sbjct: 121 EITSYKKLPLNVYQIAPKFRDEKRPRYGLLRGREFLMKDGYSYHADQDSLDETYNDYKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT----GETQVFCSKDFMDFPIPS-- 234
           Y +IF R GL   P+ A++G +GG  S EFI + D      +  V          IP   
Sbjct: 181 YEKIFERAGLNFKPIIADAGAMGGKDSQEFIAITDDRINLEKWLVLSKNITSIEEIPESV 240

Query: 235 -----ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                E      I   ++IV      YAA  ++ + +   ++
Sbjct: 241 LSEIKEELGKWLIAGEDTIVYAEGGDYAANIEMASSQFEPNV 282



 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 14/188 (7%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           NE             ARGIE+GHIF  GT+Y+  M+A    A+G+   + MG YGIG  R
Sbjct: 425 NEGEISPDGRGTLKFARGIEIGHIFKLGTRYTEAMNANILDANGRSIPMLMGCYGIGVSR 484

Query: 324 VVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +++A++E                    I +P  +APF I L+ +   D+   +   ++  
Sbjct: 485 LLSAILEQFARIYVEKTPREEFKFSWSINFPKELAPFDIHLVPVNVKDEAAMELTSELEE 544

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G  V  DD  E+ G +FA +DL+G P++V +G K  ++  VE+K R TG   +++
Sbjct: 545 KLRGKGYQVLVDDRNERAGVKFADSDLIGLPVRVTIGKK-AAEGVVEVKIRATGEVVEIN 603

Query: 431 LEEVINYA 438
            +E++N  
Sbjct: 604 KDELVNTI 611


>gi|237752688|ref|ZP_04583168.1| prolyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376177|gb|EEO26268.1| prolyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
          Length = 582

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 110/260 (42%), Positives = 162/260 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+P  +E P+D  + SH+ ++R G I Q   GIY++LPLG++ LD + +I++EE
Sbjct: 1   MRFSKIFIPTFKEAPKDVVLKSHEYLIRGGFIQQIGSGIYNFLPLGKRVLDKIKSIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+++  +  A+LW +SGR++ YGKE+LR  DR D A + GPTHEEV+T++ ++
Sbjct: 61  MDNAGANEVTLGFVTPANLWQKSGRFERYGKELLRFNDRKDNAFVLGPTHEEVITELVKA 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   YQI LKFRDE+RPRFG+MR+REF+MKD YSF    E  K  ++ M  +
Sbjct: 121 NVKSYKQLPLHLYQINLKFRDEMRPRFGLMRAREFIMKDGYSFHSNFEDLKREFDLMEQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RLGL    + A+SG IGG  S EF+VLA++GE  +               T   
Sbjct: 181 YSKIFTRLGLDFRAVFADSGAIGGSGSKEFMVLANSGEDTICVCDTCYYGANLEAATRIK 240

Query: 241 DIISLNSIVEQWTAPYAATS 260
              S  +   ++   +    
Sbjct: 241 AAPSFQAPQAEFAKFHTPNV 260



 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 4/189 (2%)

Query: 256 YAATSDVHNEKLFDSLPE---NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           Y    +V    L     E    K    +GIE GHIF  GTKYS  M ATF    GK    
Sbjct: 387 YKDLVEVQAGDLCPLCGESKGGKLYFTKGIEAGHIFQLGTKYSSAMDATFLDESGKAQPF 446

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R+++A+IE  HD KG+IW  + APF + ++     D    +  EKIY  L
Sbjct: 447 IMGCYGIGVSRLLSAIIEQHHDKKGMIWTQATAPFDVDIMVSNIKDSAQLEMGEKIYTAL 506

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +K G +   DD  E+ G++ A  +L+GFP  +I+G K +   ++E+  R    RE + + 
Sbjct: 507 NKEGIECLLDDRAERYGAKIADFELIGFPFGIIIG-KGLEKGEIELVRRKDLSREVLKVS 565

Query: 433 EVINYASHR 441
           + +   +  
Sbjct: 566 DFMALIAEL 574


>gi|123981026|gb|ABM82342.1| threonyl-tRNA synthetase [synthetic construct]
 gi|123995829|gb|ABM85516.1| threonyl-tRNA synthetase [synthetic construct]
          Length = 711

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 147/445 (33%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 294 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 351

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 352 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 410

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 411 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 469

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 470 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 511

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 512 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 560

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 561 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 616

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K      V
Sbjct: 617 --TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTV 674

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R   +  + ++ E I      
Sbjct: 675 NIRTRDNKVHGERTISETIERLQQL 699


>gi|114600748|ref|XP_001153418.1| PREDICTED: threonyl-tRNA synthetase isoform 2 [Pan troglodytes]
 gi|114600750|ref|XP_001153486.1| PREDICTED: threonyl-tRNA synthetase isoform 3 [Pan troglodytes]
 gi|114600752|ref|XP_001153550.1| PREDICTED: threonyl-tRNA synthetase isoform 4 [Pan troglodytes]
          Length = 664

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 147/445 (33%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 247 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 304

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 305 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 363

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 364 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 422

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 423 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 464

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 465 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 513

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 514 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 569

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K      V
Sbjct: 570 --TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTV 627

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R   +  + ++ E I      
Sbjct: 628 NIRTRDNKVHGERTISETIERLQQL 652


>gi|118474251|ref|YP_891864.1| prolyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
 gi|152016592|sp|A0RNT1|SYP_CAMFF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118413477|gb|ABK81897.1| prolyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
          Length = 567

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 106/288 (36%), Positives = 163/288 (56%), Gaps = 5/288 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +K ++P  +E P+DA + SH+ ++R G + Q   G+Y++LPLG++ L  V  I+R+E
Sbjct: 1   MKFTKLYVPTTKEAPKDATLPSHQFLIRAGFVAQIGSGLYNFLPLGKRVLRKVENIVRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +   +LW +S RY  +GKE+LRL DR D   +  PTHEE + D+ R 
Sbjct: 61  MDKAGANEVALSFVVPGELWKQSRRYFKFGKELLRLKDRKDNDFLLAPTHEESIVDLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI LKFRDE RPRFG++R REF+MKD YSF  +    K  ++ M  +
Sbjct: 121 KVTSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFIMKDGYSFHASEADLKREFDLMETT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-----SKDFMDFPIPSE 235
           Y +IF RLGL    + A+SG IGG  S EF+VLA  GE  +           ++    ++
Sbjct: 181 YTKIFSRLGLNFRAVEADSGAIGGSGSKEFMVLAKNGEDDILISDASNYAANIEAAKRAK 240

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                +    NS+ + +T   ++ + V      D     K V  + I 
Sbjct: 241 RVCKAERPQSNSMQKFFTPGCSSIAKVTEFFKVDPFYTIKAVMKKAIY 288



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 113/269 (42%), Gaps = 15/269 (5%)

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLAD--TGETQVFCSKDFMDFPIPSENTDFDDII 243
                +     A S     D S E ++ A    G        + +DF I +E    ++  
Sbjct: 302 DDELQEVKACNACSALELSDASEEEVIAAGLVPGYCGPVGLHENIDFYIDNELE--NEKE 359

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENK----------RVSARGIEVGHIFYFGTK 293
            +    E+            N+  F  L E K              +GIEVGHIF  G +
Sbjct: 360 MICGANEKDYHAIGVNIINFNKDRFKDLAEVKAGDKALDGGVLSVTKGIEVGHIFQLGVR 419

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS  M ATF   +GK     MG YGIG  R+VA ++E+SHD KG IW    APF + +I 
Sbjct: 420 YSETMGATFLDENGKSKPFFMGCYGIGVSRLVAVMVEASHDEKGCIWKKECAPFMVHIIV 479

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
               D         + + L   G +V  DD  E+ G + A  +L+G P  V+VG K + +
Sbjct: 480 SNIKDTEQMQFALNLESNLESSGVEVLLDDRNERFGVKMADFELIGVPFGVVVG-KGLQN 538

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRF 442
           ++VE   R    +  +S +E++       
Sbjct: 539 AEVEFIKRDGLEKVKVSSDEILGKLKEII 567


>gi|257867713|ref|ZP_05647366.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257874040|ref|ZP_05653693.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257876619|ref|ZP_05656272.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC20]
 gi|257801796|gb|EEV30699.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257808204|gb|EEV37026.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257810785|gb|EEV39605.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC20]
          Length = 569

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 148/234 (63%), Gaps = 1/234 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE  SH+L++R G I Q + GIY +LPL Q+ L+ +  +IREE
Sbjct: 1   MKQSKCLIPTLRETPSDAETLSHQLLVRAGYIRQVAAGIYVYLPLAQRVLEKIKRVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+EM++P+L   + W ESGR   YG+ + RL DRN++ ++ GPTHEE  T + ++
Sbjct: 61  LAQIDAVEMAMPSLLPYEPWKESGRASLYGESLYRLTDRNEREIVLGPTHEEPFTTLIKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ K+RDE RPRFG++RSREF+M+D YSF         +YN+  ++
Sbjct: 121 EITSYKRLPLSLYQIQTKYRDEQRPRFGLIRSREFIMQDGYSFHADEASLDQTYNRYEMA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y  I  R G++   +  ++G +GG  S EF+ L+  GE ++ C     D+    
Sbjct: 181 YHAILKRCGIEYRAVVGDNGLMGGRDSKEFLALSGIGE-ELICYSTESDYVANW 233



 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A +D    +  D  P+ K      RGIEVGHIF  GTKYS    AT    +G +  + MG
Sbjct: 380 AFADFRLVQEGDPSPDGKGTLTFTRGIEVGHIFKLGTKYSEAQEATVVDENGDEQPIIMG 439

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG+G  R+++ ++E   +  GI WP  +APF + +I     D       E++   +++V
Sbjct: 440 CYGLGVSRLLSTIVEQYGNEFGIDWPQEIAPFDVHIIQTSIEDSYQNALSEEVEEMMNQV 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  DD  E+ G +FA ADL+G P+++ +G K V    VEIK + TG   ++  EEV 
Sbjct: 500 GYQVLVDDRNERAGVKFADADLIGCPIRLTIGKKAVE-GIVEIKIKHTGATVEVRKEEVA 558

Query: 436 NYASHRFSN 444
           +  +   +N
Sbjct: 559 STLTILLAN 567


>gi|269958355|ref|YP_003328142.1| threonyl-tRNA synthetase [Anaplasma centrale str. Israel]
 gi|269848184|gb|ACZ48828.1| threonyl-tRNA synthetase [Anaplasma centrale str. Israel]
          Length = 636

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 144/438 (32%), Gaps = 40/438 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   + +   RD    +  L      I   + G   W   G      +   IR +  
Sbjct: 230 LASYIHNMQEAEKRDHRKIAKDLGWF--HIQNEALGQVFWHDKGWVIYRTIEEYIRCKLE 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G +E+  P +    LW +SG ++ + + M  + + + K +   P +      IF+S I
Sbjct: 288 KHGYLEVKTPIMLDRKLWEKSGHWEKFKENMF-VVENDKKELAIKPMNCPCHVQIFKSKI 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP    +  +  R+E     +G+MR R F   DA+ F    +       + +   
Sbjct: 347 RSYKELPIRMAEFGMCHRNEPSGSLYGLMRVRGFTQDDAHIFCTHEQVRDE-VLRFYELL 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++   G  S+ ++    P     S E                   D    S     + 
Sbjct: 406 MEVYKDFGFDSVTVKLSDRPENRIGSDE-----------------IWDRSEQSLMEPMNA 448

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +    +I +   A Y    +     L DS+    +     ++       G        A 
Sbjct: 449 LGVQYTINKGEGAFYGPKLEF---TLKDSIGREWQCGTVQLDFVLPDRLG--------AY 497

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DGK H    +    +G +     ++   + G   +W           + I      
Sbjct: 498 YIGEDGKKHIPVIIHRAILGTIERFIGILIEHYAGNIPVW------LAPVQLEILTVSGE 551

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +    +     +    V  +   E I  +   A     P+  +VG     D  V ++ 
Sbjct: 552 VEEYARGLMEMALQKNVRVELNSTEENISHKIRKAIFNKVPIVWVVGKSEAGDGCVSVRR 611

Query: 421 RLTGIREDMSLEEVINYA 438
             +G    M+ ++ +   
Sbjct: 612 YGSGETCRMAADKALKTL 629


>gi|317057674|ref|YP_004106141.1| threonyl-tRNA synthetase [Ruminococcus albus 7]
 gi|315449943|gb|ADU23507.1| threonyl-tRNA synthetase [Ruminococcus albus 7]
          Length = 648

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 142/445 (31%), Gaps = 38/445 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  ++E   RD      +L   T  +    +G+   LP G K +  +   I +E+ + G 
Sbjct: 233 LKQMEEAKLRDHNKLGRELEYFTT-VDYIGQGLPILLPKGAKVIQTLQRWIEDEEYKRGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEML---RLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                P +   +L+  SG +D Y   M       D   +     P        +F +  +
Sbjct: 292 QLTKTPFMSKRELYKISGHWDHYRDGMFILGDPDDETKECFALRPMTCPFQYQVFLNRKR 351

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +    FR+E      G++R R+F + + +   L PE  +  +        
Sbjct: 352 SYRDLPMRLGETSTLFRNEDSGEMHGLIRVRQFTISEGH-LILRPEQLEEEFKGCLDLAK 410

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFDD 241
                          E+  +  D+S+ F           +  + +  +    +     DD
Sbjct: 411 YC------------LETIGLAEDVSYRFSQWDPANPNNKYEGTAEQWEEAQGAMKKILDD 458

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           I     I     A Y    D+  + +F    +   +    I++        + +      
Sbjct: 459 IGLDYEIGIDEAAFYGPKLDIQIKNVF---GKEDTLITIQIDM--------QIAKKFGME 507

Query: 302 FKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DGK      +    +G      A++   + G   +W        + +         
Sbjct: 508 YVDKDGKMKMPYIIHRTSVGCYERTLALLIEKYAGVLPLWLAPEQVRILPIKP------E 561

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D    +   +  +G  V  D   + IG +   A     P   I+G   V D  V ++ 
Sbjct: 562 HNDYAYDLAEEMRDLGMRVEVDAEDDNIGPKIKQARFDRVPYMFIIGDNEVKDGTVTVRS 621

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    M   + I          
Sbjct: 622 RKEGELPAMPAADAIAKLKEEIDTK 646


>gi|52632425|gb|AAH10578.2| Threonyl-tRNA synthetase [Homo sapiens]
          Length = 723

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 148/445 (33%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 363

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 364 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 422

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G++R R F   DA+ F    +           
Sbjct: 423 RPRSWRELPLRLADFGVLHRNELSGALTGLIRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 481

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 482 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 523

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 524 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 572

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 573 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 628

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K      V
Sbjct: 629 --TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTV 686

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R   +  + ++ E I      
Sbjct: 687 NIRTRDNKVHGERTISETIERLQQL 711


>gi|237785631|ref|YP_002906336.1| threonyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758543|gb|ACR17793.1| Threonyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 663

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 63/460 (13%), Positives = 135/460 (29%), Gaps = 52/460 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      +L L +    +   G   + P G    + +    R      
Sbjct: 228 EYQQRMEEAERRDHRRLGAELNLFS-FPDEIGSGFPVFHPDGGIVRNEMEQHSRRRHIEA 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND------------KAMIYGPTHEE 112
           G   +  P L   DL+ +SG  D Y   M      ++            +     P +  
Sbjct: 287 GYSFVYTPHLTKGDLFQKSGHLDFYKDGMFPPMKLDEERDAEGNITKPAQDYYAKPMNCP 346

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSK 171
           +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  +
Sbjct: 347 MHNLIFASKGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIYC-TEDQLE 405

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           +  + +    + +    GL    +   +                    +   S +  +  
Sbjct: 406 NELSTVLDFIISLLKDYGLDDFYLELST----------------KDPNKFVGSDEIWERS 449

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                   D             A Y       + +  D++    ++S   ++    F   
Sbjct: 450 TEILRRVADKSGLDLVPDPGGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLP 502

Query: 292 TKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++       +   DG       +     G++     V+   + G    W        I 
Sbjct: 503 ERF----ELEYTAPDGSKQRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVVGIP 558

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +               ++  +L   G     D   +++  +         P  ++ G + 
Sbjct: 559 VA------DEFSPYLGEVVDKLRARGVRAEVDISDDRMQKKIRNHTTHKAPFMLLAGGRD 612

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYAS---HRFSNNRP 447
                V  +         + +E+ ++  S      +N +P
Sbjct: 613 AEAGAVSFRFLDGSQVNGVPVEKAVDVISTWVEEHNNEQP 652


>gi|195440008|ref|XP_002067851.1| GK12501 [Drosophila willistoni]
 gi|194163936|gb|EDW78837.1| GK12501 [Drosophila willistoni]
          Length = 461

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 142/466 (30%), Positives = 223/466 (47%), Gaps = 47/466 (10%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           R SK F P+L   P+DA I        S KL+   G+I   S G Y  +P+ Q++LD   
Sbjct: 3   RASKIFWPML-VKPKDAVIKQTEQLSRSQKLLTELGLIKSGSNGTYQIMPIAQRSLDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            ++++     G  ++++P L S  LW +SGR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  NLVQQNMVEAGGQKITLPVLTSTALWKKSGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 T-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T  +  +   SYR LP   YQI  KFRDEL+ RFG+MR++EFLMKD Y+FDL+ E +K +
Sbjct: 122 TAMLATAAPISYRQLPLRLYQIGPKFRDELKSRFGMMRAKEFLMKDMYTFDLSQETAKDT 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R F +L +  + + AE+G +GG LSHE+  ++  GE  +   +        
Sbjct: 182 YDIITKAYDRFFQQLEVPFVKVNAETGIMGGSLSHEYHYISSVGEDTLVKCESC------ 235

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE-NKRVSARGIEVGHIFYFGT 292
                                        H      +  + +      G+EV H F  G 
Sbjct: 236 --------------------GFAGNAEVFHQSSNCPNCQKADNLSQVHGVEVAHTFLLGD 275

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS P+ ATF    GK   + MG YGIG  RV+AA +E     + + WP  +AP+ + +I
Sbjct: 276 KYSKPLGATFLNTSGKPQSLIMGCYGIGLSRVLAASLEVLSTDQELRWPKLLAPYDVCVI 335

Query: 353 NIKAHDQVCRDACEKI-YARLSKVG-C----DVFWDDM-GEQIGSQFAVADLLGFPLQVI 405
             K   +      E++ Y  L  +G      +V  DD     IG +      LG P  ++
Sbjct: 336 GPKQGSKEQT-LAERVEYNLLEHLGDICGSDEVLHDDRKDLTIGKRLLDGKRLGHPFIIV 394

Query: 406 VGSKFV--SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            G+K V   D ++E+     G + +++L E +   +   S  + ++
Sbjct: 395 AGAKSVLPEDPRLELHS-SDGNKMELNLNEALQMVNQYVSQKKHLI 439


>gi|291398043|ref|XP_002715638.1| PREDICTED: threonyl-tRNA synthetase 2, mitochondrial [Oryctolagus
           cuniculus]
          Length = 718

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 84/451 (18%), Positives = 146/451 (32%), Gaps = 57/451 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      +  L     H+ S G   +LP G +  + + A IR E    G  E+  PTL 
Sbjct: 300 RDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEVKTPTLF 357

Query: 76  SADLWVESGRYDSYGKEML----------------RLADRNDKAMIYGPTHEEVMTDIFR 119
           S  LW +SG ++ Y ++M                     +    +   P +      +F 
Sbjct: 358 STKLWEKSGHWEHYKEDMFALQPSDSDSSACSQSDHPTSQPPDTLALKPMNCPAHCLMFA 417

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +S+R LP          R E      G+ R R F   DA+ F    +     Y    
Sbjct: 418 HRPRSWRELPLRLADFGALHRAEASGSLGGLTRLRCFQQDDAHIFCAPDQLEAEIY-GCL 476

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++  LG                    F +   T  +         D         
Sbjct: 477 DFLRSVYAVLGFS------------------FHLALSTRPSGFLGEPCLWDQAEQLLQQS 518

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +       +     A Y    DVH   L D+L    +     ++    F    ++    
Sbjct: 519 LEAFGEPWDLSPGDGAFYGPKIDVH---LRDALGRPHQCGTIQLD----FQLPLRFD--- 568

Query: 299 SATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +KG  G  +  V +    +G++  +  V+    +  G  WP  ++PF++++I +   
Sbjct: 569 -LQYKGQAGNLERPVLIHRAVLGSVERLLGVLA---ESCGGKWPLWLSPFQVAVIPVGTE 624

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   +   ++   L   G     D D G  +  +   A L  +  Q +VG K  S+  V
Sbjct: 625 QE---EYAREVQQTLQAAGLASDLDADPGLTLSRRVRRAQLAHYNFQFVVGRKEQSNRTV 681

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++ R      +  L E         +   P
Sbjct: 682 NVRTRDNQRLGERGLAEATRRLLELQNTRVP 712


>gi|76363445|sp|Q4J9C4|SYT_SULAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 549

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 79/431 (18%), Positives = 155/431 (35%), Gaps = 36/431 (8%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  I   +L L +    +   G+  + P GQ     +   + E  +  G  E+    +  
Sbjct: 142 DHRIIGDRLDLFS-FPEEAPPGVVLFHPNGQIIRKEMMRFMEEINDSMGYKEVYTSHVYR 200

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           + LW  SG YD Y  +ML     ND+ +   P +      I++S ++SY++LP  F +  
Sbjct: 201 SLLWKISGHYDYYKDKMLLFEIDNDEELGIKPMNCPAHILIYKSKVRSYKDLPIRFSEFG 260

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             +R E +   +G++R R F   D + F    +        M  +               
Sbjct: 261 HVYRWEKKGELYGLLRVRGFTQDDGHIFLREDQIKDEIKLLMKKT--------------- 305

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
             +   I G    +  V   T   +   + +  +    +  +  +++     + E+  A 
Sbjct: 306 -LDVLAIFGFKGDDVRVNLSTRPDESIGTDEQWNKATDALISALNELNIKYEVKEKEGAF 364

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QM 314
           Y    D     + DSL    ++S   ++    F    ++       +   DG       +
Sbjct: 365 YGPKIDFD---IRDSLSRWWQLSTIQVD----FNLPERF----KLEYVDKDGSKKRPVMV 413

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++    A++     GK   W   ++P ++ ++ I        D    + A+L +
Sbjct: 414 HRAIYGSIDRFMAILLEHFRGKLPTW---LSPIQVRVLPIT---DEIEDYGNSLMAKLRE 467

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V  D   E +  +   A   G P  +IVG K   + KV ++ R       +++E+ 
Sbjct: 468 NKIRVDMDSGEETLSKRIKKAYDDGVPYLIIVGRKEKDEGKVTVRARGNIEIRGINVEKF 527

Query: 435 INYASHRFSNN 445
           +        N 
Sbjct: 528 VQALVEEIRNK 538


>gi|257066241|ref|YP_003152497.1| prolyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
 gi|256798121|gb|ACV28776.1| prolyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
          Length = 572

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 107/246 (43%), Positives = 155/246 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY++P L+E+P DAE ASHK + R   I + + G+YS+LPLG+K ++ + AI+RE 
Sbjct: 1   MRLSKYYMPTLREDPVDAETASHKFLTRGAFIRKQASGVYSFLPLGKKVINKIEAIVREA 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+S   LQ+ ++W  SGR++++G EM +L DR+D+    GPT EE  T + + 
Sbjct: 61  MENHDSIEVSTSILQAREIWEASGRWETFGPEMFKLKDRHDREYCLGPTAEEAFTALVKD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG+ RSR+FLMKDAYSFD   EG + SY KM+ +
Sbjct: 121 ELNSYKQLPLNIYQIVDKFRDEKRPRFGINRSRDFLMKDAYSFDADIEGLEISYQKMWDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F ++GL    +  +SG +GG  SHEFI L++TGE  +  + D        +     
Sbjct: 181 YVEAFDKMGLDYKIVEGDSGTMGGKKSHEFIALSETGEGVILYTDDSDYAATDEKARFKM 240

Query: 241 DIISLN 246
           D +  +
Sbjct: 241 DFVKED 246



 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 70/174 (40%), Positives = 92/174 (52%), Gaps = 1/174 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 +ARGIEVG+IF  GTKYS  + A F   +GK     MGSYGIG  R V+A++E 
Sbjct: 396 GSGMLKAARGIEVGNIFQLGTKYSESLEAYFLDENGKQKPFIMGSYGIGISRSVSAIVEQ 455

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            HD KGI+WP SVAPF+  +  I  +    ++  EKIY RL +   DV  DD  E+ G +
Sbjct: 456 YHDDKGIVWPTSVAPFEAIVTIININKDEQKELGEKIYQRLREERIDVILDDRKERAGVK 515

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           F   DL+G P ++ VG K  +D  VE   R     E +S  E I         +
Sbjct: 516 FNDRDLIGIPYRITVG-KDAADDIVEYSTRKDMENEKISSSEAIEKIVDSIKKD 568


>gi|70607029|ref|YP_255899.1| threonyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
 gi|68567677|gb|AAY80606.1| threonine-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
          Length = 552

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 79/431 (18%), Positives = 155/431 (35%), Gaps = 36/431 (8%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  I   +L L +    +   G+  + P GQ     +   + E  +  G  E+    +  
Sbjct: 145 DHRIIGDRLDLFS-FPEEAPPGVVLFHPNGQIIRKEMMRFMEEINDSMGYKEVYTSHVYR 203

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           + LW  SG YD Y  +ML     ND+ +   P +      I++S ++SY++LP  F +  
Sbjct: 204 SLLWKISGHYDYYKDKMLLFEIDNDEELGIKPMNCPAHILIYKSKVRSYKDLPIRFSEFG 263

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             +R E +   +G++R R F   D + F    +        M  +               
Sbjct: 264 HVYRWEKKGELYGLLRVRGFTQDDGHIFLREDQIKDEIKLLMKKT--------------- 308

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
             +   I G    +  V   T   +   + +  +    +  +  +++     + E+  A 
Sbjct: 309 -LDVLAIFGFKGDDVRVNLSTRPDESIGTDEQWNKATDALISALNELNIKYEVKEKEGAF 367

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QM 314
           Y    D     + DSL    ++S   ++    F    ++       +   DG       +
Sbjct: 368 YGPKIDFD---IRDSLSRWWQLSTIQVD----FNLPERF----KLEYVDKDGSKKRPVMV 416

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++    A++     GK   W   ++P ++ ++ I        D    + A+L +
Sbjct: 417 HRAIYGSIDRFMAILLEHFRGKLPTW---LSPIQVRVLPIT---DEIEDYGNSLMAKLRE 470

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V  D   E +  +   A   G P  +IVG K   + KV ++ R       +++E+ 
Sbjct: 471 NKIRVDMDSGEETLSKRIKKAYDDGVPYLIIVGRKEKDEGKVTVRARGNIEIRGINVEKF 530

Query: 435 INYASHRFSNN 445
           +        N 
Sbjct: 531 VQALVEEIRNK 541


>gi|325571083|ref|ZP_08146655.1| proline--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325156168|gb|EGC68354.1| proline--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 569

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 147/234 (62%), Gaps = 1/234 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DAE  SH+L++R G I Q + GIY +LPL Q+ L+ +  +IREE
Sbjct: 1   MKQSKCLIPTLRETPSDAETLSHQLLVRAGYIRQVAAGIYVYLPLAQRVLEKIKRVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A+EM++P+L   + W ESGR   YG+ + RL DRN++ ++ GPTHEE  T + ++
Sbjct: 61  LAEIDAVEMAMPSLLPYEPWKESGRASLYGESLYRLTDRNEREIVLGPTHEEPFTTLIKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ K+RDE RPRFG++RSREF+M+D YSF         +YN+  ++
Sbjct: 121 EITSYKRLPLSLYQIQTKYRDEQRPRFGLIRSREFIMQDGYSFHADEASLDQTYNRYEMA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y  I  R G++   +  ++G +GG  S EF+ L+  GE ++ C     D+    
Sbjct: 181 YHAILKRCGIEYRAVVGDNGLMGGRDSKEFLALSGIGE-ELICYSTESDYVANW 233



 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A +D    +  D  P+ K      RGIEVGHIF  GTKYS    AT    +G +  + MG
Sbjct: 380 AFADFRLVQEGDPSPDGKGTLTFTRGIEVGHIFKLGTKYSEAQEATVVDENGDEQPIIMG 439

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YG+G  R+++ ++E   +  GI WP  +APF + +I     D       E++   +++V
Sbjct: 440 CYGLGVSRLLSTIVEQYGNEFGIDWPQEIAPFDVHIIQTSIEDSYQNALSEEVEEMMNQV 499

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  DD  E+ G +FA ADL+G P+++ +G K V    VEIK + TG   ++  EEV 
Sbjct: 500 GYQVLVDDRNERAGVKFADADLIGCPIRLTIGKKAVE-GIVEIKIKHTGATVEVRKEEVA 558

Query: 436 NYASHRFSN 444
           +  +   +N
Sbjct: 559 STLTILLAN 567


>gi|37522094|ref|NP_925471.1| prolyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
 gi|81834313|sp|Q7NHL0|SYP_GLOVI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|35213093|dbj|BAC90466.1| prolyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
          Length = 589

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 103/243 (42%), Positives = 136/243 (55%), Gaps = 8/243 (3%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIRE 59
           R S  F   L+E P +A   SHKL+LR G I   +   G+Y++ PL Q+ L  V  I+RE
Sbjct: 3   RLSSSFFFTLREAPAEAVAVSHKLLLRAGFIRPLAGTAGLYAYGPLMQRVLQKVGRIVRE 62

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRND---KAMIYGPTHEEVM 114
           E + TGA E     LQ A++W ESGR+  Y ++  M  L D      +    GPTHEE +
Sbjct: 63  EMDATGAQEALFCQLQPAEIWKESGRWTVYTQDGTMFTLKDGQGEQAREYGLGPTHEEAV 122

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
            D  R+ + SY+ LPF  YQ+Q KFR+E RPRFG+MR REF+MKD YSF  TPE    +Y
Sbjct: 123 CDFVRASLNSYKQLPFHLYQVQTKFRNEKRPRFGLMRGREFIMKDGYSFHATPESLDETY 182

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             M+ +Y  +F R GL    + A+SG IGG  SHEF+ L D GE  +        +    
Sbjct: 183 RAMYRAYTNMFRRCGLDFRAVEADSGAIGGSGSHEFMALCDIGEDTILYCD-AAGYAANV 241

Query: 235 ENT 237
           E  
Sbjct: 242 EKA 244



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 71/189 (37%), Positives = 100/189 (52%), Gaps = 4/189 (2%)

Query: 258 ATSDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             +D+   +  D     PE    SARG+E+GHIF  GTKYS PM   F    G+     M
Sbjct: 393 EVADLDTAQAGDHCHLAPEATLQSARGVELGHIFKLGTKYSRPMQVLFADEAGELQPALM 452

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YG+G  R+ AAV+E SHD  GI+WP ++AP+++ L+      +  R A E++Y  L+ 
Sbjct: 453 GCYGVGVSRLPAAVVEQSHDNDGILWPIAIAPYQVVLVPANVAVEAQRQAAEELYRSLTA 512

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G D   DD  E+ G +F  ADL+G PL+V +G + +    VEIK R  G  E + L E 
Sbjct: 513 AGIDTLLDDRPERAGVKFKDADLIGIPLRVTLG-RDLEAGLVEIKVRGGGAAEKVPLAEA 571

Query: 435 INYASHRFS 443
           +        
Sbjct: 572 LAQIKGLIE 580


>gi|159903050|ref|YP_001550394.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
 gi|226701318|sp|A9BED0|SYP_PROM4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|159888226|gb|ABX08440.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
          Length = 600

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 111/240 (46%), Positives = 150/240 (62%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEI SH+L++R G I + + GIY++LPL  + +  +N IIREE
Sbjct: 1   MRVSRLMLVTLRDAPADAEIISHQLLIRGGFIKRITSGIYAYLPLMWRVIQKINCIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  G +E  +P L  +DLW ++GR++ Y      M  L DR  + +  GPTHEE++T I
Sbjct: 61  LNAKGCLEALLPQLHPSDLWKKTGRWEGYTAGEGIMFNLKDRQGRELGLGPTHEEIITQI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               + SY+ LP   YQIQ KFRDE+RPRFG+MRSREF+MKDAYSF    E  K SY  M
Sbjct: 121 AGESLHSYKQLPVNLYQIQTKFRDEIRPRFGLMRSREFIMKDAYSFHANEEDLKTSYASM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y +IF R G+K++ + A+SG IGG  S EF+V AD GE  +  SKD   +    E  
Sbjct: 181 DDAYRKIFERCGIKTVAVEADSGAIGGAASQEFMVTADAGEDLILISKDG-KYAANQEKA 239



 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 69/191 (36%), Positives = 94/191 (49%), Gaps = 4/191 (2%)

Query: 259 TSDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             D+   K  D      +   +  RGIEVGHIF  G KYS  + A F    G      MG
Sbjct: 406 VVDIRKAKPGDQCFYDNKQFLIEKRGIEVGHIFQLGRKYSSSLEANFTNEKGSSEPFWMG 465

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+  A +E SHD  GIIWP S++PF++ ++     D+V     E IY +L   
Sbjct: 466 CYGIGVSRIAQAAVEQSHDQSGIIWPLSISPFEVIIVIANIKDEVQNRLGEDIYKQLRHK 525

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G +F  ADL+G P +V+VG +  S  KVE+  R     + +  E V+
Sbjct: 526 GIDVLLDDRDERAGVKFKDADLIGIPWRVVVG-RDSSSGKVELLKRSDRSVKLIESEIVV 584

Query: 436 NYASHRFSNNR 446
                  S  +
Sbjct: 585 KELIAEISRKK 595


>gi|269956448|ref|YP_003326237.1| threonyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305129|gb|ACZ30679.1| threonyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
          Length = 672

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 62/447 (13%), Positives = 125/447 (27%), Gaps = 42/447 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +  L +        G+  + P G      +   +R+     G   +  
Sbjct: 258 EAERRDHRRIGVEQDLFSFH-ENVGSGLPLFHPKGGVIKRVMEDYVRQRHIEEGFSYVGT 316

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKA--------MIYGPTHEEVMTDIFRSHIK 123
           P +   DL+  SG    YG  M    + +D                +  +   I+ S  +
Sbjct: 317 PHISKEDLFYTSGHLPYYGDTMFPSMEFHDDDHPDAPALKYRLKAMNCPMHNLIYSSRGR 376

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP   ++    +R E      G+ R R     D++S+    +        +    L
Sbjct: 377 SYRELPIRLFEFGSVYRYEKGGVVQGLTRVRGLTQDDSHSYVTQEQAPGE-VTHLLDFML 435

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    GL    +   +               D+   +   S +              D 
Sbjct: 436 SVLKDFGLNDFYLELSTRD-------------DSKPDKFVGSDEEWAKATAILEQVGRDS 482

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y       + +  D++    ++     +      FG          +
Sbjct: 483 GLELVPDPGGAAFYGPKI---SVQAKDAIGRTWQMGTVQYDFNQPARFG--------LEY 531

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG       + S   G++     V+   + G    W   V    + +       +  
Sbjct: 532 TAPDGTRQQPVMIHSAKFGSIERFMGVLIEHYAGSFPAWLAPVQVLAVPVA------EAF 585

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               + + A+L+  G     D   ++   +   A     P  +I G +      V  ++R
Sbjct: 586 DGYLKDVVAQLTARGIRAEVDLSDDRFAKKIRNASKEKVPFVLIAGGEDADAGAVSFRYR 645

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPV 448
                  + + E +        +   V
Sbjct: 646 DGRQDNGVPVAEAVERIVAAVRDRVQV 672


>gi|309808806|ref|ZP_07702691.1| proline--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
 gi|308167932|gb|EFO70065.1| proline--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
          Length = 472

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 109/273 (39%), Positives = 143/273 (52%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNETGTYSANLEMARSID 240

Query: 241 DI---ISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                      +E+   P  AT +  +E L   
Sbjct: 241 TFSPEKEELKPLEKVATPDCATIEQLSEFLHVP 273



 Score = 45.9 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 42/97 (43%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     N    D +          IEVGHIF  GT Y+  M+A F   +GK  
Sbjct: 376 DFKVNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQ 435

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + MGSYGIG  R+++A++E      GI        F
Sbjct: 436 PIIMGSYGIGVTRMLSAIVEQHSTDNGIFLAKRSCSF 472


>gi|309807201|ref|ZP_07701175.1| proline--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|308166422|gb|EFO68627.1| proline--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
          Length = 472

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 109/273 (39%), Positives = 143/273 (52%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNETGTYSANLEMARSID 240

Query: 241 DI---ISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                      +E+   P  AT +  +E L   
Sbjct: 241 TFSPEKEELKPLEKVATPDCATIEQLSEFLHVP 273



 Score = 45.9 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 42/97 (43%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     N    D +          IEVGHIF  GT Y+  M+A F   +GK  
Sbjct: 376 DFKVNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQ 435

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + MGSYGIG  R+++A++E      GI        F
Sbjct: 436 PIIMGSYGIGVTRMLSAIVEQHSTDNGIFLAKRSCSF 472


>gi|300120854|emb|CBK21096.2| unnamed protein product [Blastocystis hominis]
          Length = 767

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 139/439 (31%), Gaps = 41/439 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +    D      +  L     H+ S G   +LP G    + +   IR E +  G  E+ 
Sbjct: 367 EEAKKNDHRRLGEQQDLF--FFHELSPGSCFFLPKGAYIYNKLIEFIRHEYHERGYTEVV 424

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + + +LW  SG    Y   M  L + +D      P +      +F+  + SYR LP 
Sbjct: 425 SPNVYNLELWNISGHASHYRDSMF-LFNCDDTEYGLKPMNCPGHCLMFKHAMHSYRELPI 483

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F    +  R+EL     G+ R R F   DA+ F    +  +   + +      ++   G
Sbjct: 484 RFADFGVLHRNELSGALNGLTRVRRFQQDDAHIFCRPDQIKQE-VSGVLDFMRHVYGIFG 542

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           +    +   + P            A+   T+                           + 
Sbjct: 543 MSF-NLELSTRPKKAMGDLALWQQAEASLTESLNEFIGE---------------GNWKVN 586

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+   K+ D+L    + +   ++    F    ++       +K ADG  
Sbjct: 587 PGDGAFYGPKIDI---KVMDALHRVHQTATIQLD----FQLPIRF----ELEYKKADGSM 635

Query: 310 HYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               M    I     R  A ++E              A            +  C +  +K
Sbjct: 636 ERPVMVHRAILGSVERSFAILLEHFKGKWPFWLSPRQAIVIPV-------NATCMEYAQK 688

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  RL         DD G  +      A L  F   ++VG+K      V I+ R   I  
Sbjct: 689 VRQRLWDNYFQAEVDDTGRTLNKMVREAQLAQFNYILVVGNKEAETDTVTIRSRSNEIIG 748

Query: 428 DMSLEEVINYASHRFSNNR 446
             +++E I        N +
Sbjct: 749 TKTVDECIAMFKEMEKNYQ 767


>gi|194384006|dbj|BAG59361.1| unnamed protein product [Homo sapiens]
          Length = 602

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 147/445 (33%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 185 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 242

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 243 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 301

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 302 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 360

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 361 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 402

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 403 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 451

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 452 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 507

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K      V
Sbjct: 508 --TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTV 565

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R   +  + ++ E I      
Sbjct: 566 NIRTRDNKVHGERTISETIERLQQL 590


>gi|281357583|ref|ZP_06244070.1| prolyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
 gi|281315840|gb|EFA99866.1| prolyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
          Length = 575

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 108/261 (41%), Positives = 152/261 (58%), Gaps = 2/261 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK     ++E+P+DA+  SHK ++R G +   S GIYS LPLG++ ++ + AIIREE N
Sbjct: 1   MSKLVGRRIKEDPKDAKTVSHKFLVRGGYVRPVSAGIYSLLPLGKRIVEKIEAIIREEMN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R    E+ +P +  ADLW ESGRY+S G E+LR  DRNDK MI   THEE +  + R+ +
Sbjct: 61  RIEGQEVLMPVVLPADLWKESGRYESVGAELLRFRDRNDKPMILAMTHEEGIVHLVRTEL 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY+ LP   YQIQ K+RDE RPR G++R REF MKDAYSF       +  Y +   +Y 
Sbjct: 121 NSYKQLPVMLYQIQTKYRDEARPRAGLIRVREFTMKDAYSFHTDQADLEKYYYRCHEAYE 180

Query: 183 RIFHRLGLKSI-PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           RIF R+G+K++  + A SG +GG +SHEF+ + D GE  V  + D+              
Sbjct: 181 RIFRRVGMKNVLSIEANSGMMGGKVSHEFMAICDCGEDTVITNADYSYRANREIAVAAWK 240

Query: 242 I-ISLNSIVEQWTAPYAATSD 261
                   +E+ + P   T +
Sbjct: 241 FDKGEPLPLEKVSTPGTKTIE 261



 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/174 (41%), Positives = 103/174 (59%), Gaps = 2/174 (1%)

Query: 261 DVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   +  D  P      + +RGIEVG+IF  GTKY+  M   +   DGK H + MG YG
Sbjct: 384 DIACVREGDPCPLTGQPLIFSRGIEVGNIFQLGTKYTESMHCDYLDRDGKSHPMIMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R +AAVIE S D  G IWP S+AP+++ L  I        +ACEK+YA L+  G +
Sbjct: 444 IGVGRAMAAVIEQSCDEYGPIWPMSIAPYQVELCAINPDKAGVGEACEKLYADLTAAGIE 503

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           V +DD GE+ GS F+ ADL+G PL+++V  K ++D+ VE K R +   E + + 
Sbjct: 504 VLYDDRGEKAGSMFSDADLIGIPLRLVVSPKTLADNAVEFKVRGSRDAEKLEIS 557


>gi|12845562|dbj|BAB26799.1| unnamed protein product [Mus musculus]
          Length = 722

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 151/449 (33%), Gaps = 44/449 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 305 KLLKEWEKFQEEAKNRDHGKIGRDQELY--FFHELSPGSCFFLPKGAYIYNTLMEFIRSE 362

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M    +   +     P +      +F  
Sbjct: 363 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSF-EVEKEQFALKPMNCPGHCLMFDH 421

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 422 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 480

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E    A+                        
Sbjct: 481 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIEIWNQAEK-----------------QLENSL 522

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 523 NEFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 571

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 572 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 627

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K  +   V
Sbjct: 628 --TCDEYAQKVRQQFHDAKFMADTDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTV 685

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I+ R   +  + ++EE +          
Sbjct: 686 NIRTRDNKVHGERTVEETVRRLQQLKQTR 714


>gi|229817161|ref|ZP_04447443.1| hypothetical protein BIFANG_02420 [Bifidobacterium angulatum DSM
           20098]
 gi|229784950|gb|EEP21064.1| hypothetical protein BIFANG_02420 [Bifidobacterium angulatum DSM
           20098]
          Length = 637

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 119/427 (27%), Positives = 181/427 (42%), Gaps = 20/427 (4%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DA++ S KL+ R G + + + GI++WLPLG   L+ +  IIREE 
Sbjct: 37  RMSTMFLRTLREDPADADVVSDKLLQRAGYLRKAAPGIWTWLPLGLNVLNKIENIIREEM 96

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
               A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +  
Sbjct: 97  ASINAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDL 156

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +Y
Sbjct: 157 YSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGAY 216

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RL L  +P+ A +GP+GG  S EF+   + GE     S     + + +  T    
Sbjct: 217 ERIFKRLDLDYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEALTTPEPP 276

Query: 242 IISLNSIVE--QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL--- 296
            I  ++     +   P AAT D   E    + P       +  ++        K++    
Sbjct: 277 AIDYSNTPAATKRPTPDAATIDKMVEFANVNHPRTDGREWQASDILKNVVIVVKHAEDEN 336

Query: 297 ----PMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                      G  G                 +  A  E       ++            
Sbjct: 337 HDEPWRELVVVGVPGDRVVDMKRLEAQFAPAEIEEATEEDLKKHPELVKGYIGPMVLGPQ 396

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ-VIVGSKF 410
                  +   +  E +             D    +  + F  AD  G     ++ G  F
Sbjct: 397 ARDGKKAENADETGEAL---------RYLLDAHIARGSAWFTGADEAGVDYYDLVYGRDF 447

Query: 411 VSDSKVE 417
            +D  VE
Sbjct: 448 EADGTVE 454



 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+        RG+E+G +F  G KYS  +       +GK   V MG
Sbjct: 451 GTVEAVEVRHGDMSPDGSGPLSFERGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMG 510

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+A + E+ HD +G+ W  S        +     D+   +  E++ A L   
Sbjct: 511 SYGIGVSRVMACIAETHHDERGLAW-PSCIAPAQVHVVATGKDEKAFEGAEQLIAELEAK 569

Query: 376 GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD  +   G +F  A+L+G P   +VG  +V+D  +EI+ R    +  +   E 
Sbjct: 570 GVEVIFDDRKKVSPGVKFKDAELIGVPQIAVVGRDYVNDGTIEIRDRNGDNKVIVPAAEA 629

Query: 435 INYASHRF 442
           +     R 
Sbjct: 630 VETLLARI 637


>gi|13435498|gb|AAH04621.1| Tars protein [Mus musculus]
          Length = 457

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 151/445 (33%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 40  KLLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNTLMEFIRSE 97

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M    +   +     P +      +F  
Sbjct: 98  YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSF-EVEKEQFALKPMNCPGHCLMFDH 156

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 157 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 215

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E    A+                        
Sbjct: 216 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIEIWNQAEK-----------------QLENSL 257

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 258 NEFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 306

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 307 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 362

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K  +   V
Sbjct: 363 --TCDEYAQKVRQQFHDAKFMADTDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTV 420

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R   +  + ++EE +      
Sbjct: 421 NIRTRDNKVHGERTVEETVRRLQQL 445


>gi|62078811|ref|NP_001014062.1| threonyl-tRNA synthetase, mitochondrial precursor [Rattus
           norvegicus]
 gi|81884372|sp|Q68FW7|SYTM_RAT RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; AltName:
           Full=Threonyl-tRNA synthetase-like 1; Flags: Precursor
 gi|51259375|gb|AAH79154.1| Threonyl-tRNA synthetase 2, mitochondrial (putative) [Rattus
           norvegicus]
          Length = 723

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 85/458 (18%), Positives = 146/458 (31%), Gaps = 57/458 (12%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
              +   RD      +  L     H+ S G   +LP G +  + + A IR E  R G  E
Sbjct: 298 RREEAELRDHRRIGKEQELF--FFHELSPGSCFFLPRGTRIYNALVAFIRAEYARRGFSE 355

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD----------------RNDKAMIYGPTHEE 112
           +  PTL S  LW +SG ++ Y   M  L                       +   P +  
Sbjct: 356 VKTPTLFSTKLWEQSGHWEHYRAHMFSLKPPGTDGVDSSQSGHPARCPKDTLALKPMNCP 415

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSK 171
               +F    +S+R LP       +  R E      G+ R   F   DA+ F   P   +
Sbjct: 416 AHCLMFAHRPRSWRELPVRLADFGVLHRAEASGSLGGLTRLWRFQQDDAHIFCA-PSQLE 474

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                       ++  LG                    F +   T            D  
Sbjct: 475 AEIRGCLDFLRSVYSVLGFS------------------FHLALSTRPPGFLGEPHLWDQA 516

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                   ++     ++     A Y    DVH   L D+L    +     ++    F   
Sbjct: 517 EKVLQQALEEFGEPWNLNPGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLP 569

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++       +KG  G  +  V +    +G++  +  V+    +  G  WP  ++PF++ 
Sbjct: 570 LRFD----LQYKGPAGAPECPVLIHRAVLGSVERLLGVLA---ESCGGRWPLWLSPFQVV 622

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSK 409
           +I ++   +   D   ++   L   G     D D G  +  +   A L  +  Q +VG +
Sbjct: 623 VIPVRTEQE---DYARQVQQCLQAAGLVSDLDADCGLTLSRRVRRAQLAHYNFQFVVGQR 679

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
             S   V ++ R      +  L E +           P
Sbjct: 680 EQSQMSVNVRTRDNRQLGERGLAESVQRLLELQDARVP 717


>gi|309805512|ref|ZP_07699557.1| proline--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
 gi|308165163|gb|EFO67401.1| proline--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
          Length = 472

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 109/273 (39%), Positives = 143/273 (52%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNETGTYSANLEMARSID 240

Query: 241 DI---ISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                      +E+   P  AT +  +E L   
Sbjct: 241 TFSPEKEELKPLEKVATPDCATIEQLSEFLHVP 273



 Score = 45.9 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 42/97 (43%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     N    D +          IEVGHIF  GT Y+  M+A F   +GK  
Sbjct: 376 DFKVNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQ 435

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + MGSYGIG  R+++A++E      GI        F
Sbjct: 436 PIIMGSYGIGVTRMLSAIVEQHSTDNGIFLAKRSCSF 472


>gi|291571004|dbj|BAI93276.1| threonyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 604

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 61/436 (13%), Positives = 136/436 (31%), Gaps = 33/436 (7%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L      Q   G+  W P G      +   ++ EQ R G   + 
Sbjct: 196 EEALRRDHRRLGKELGLFI-FSDQVGPGLPLWTPKGTILRTTLEDFLKREQVRRGYQPVV 254

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLP 129
            P L   +L+  SG +  Y +++  +   ++    +    +      I++S ++SYR LP
Sbjct: 255 TPHLGRVNLFKTSGHWQKYREDLFPMMGESEDEGFVLKAMNCPFHVQIYKSSLRSYRELP 314

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
               +    +R E     G +       +D     +TPE     + K+      +  +L 
Sbjct: 315 IRLAEFGTVYRYEQSGELGGLTRVRGFTQDDAHLFVTPEQLDDEFLKVVDLIQSVLKKL- 373

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                 + +            +   D    +   S    +    +     + +       
Sbjct: 374 ------KLDQSFKAR------LSFRDPNSDKYIGSDQAWEKAENAIRRAVETLGMNYFEG 421

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D     + D+L    ++    ++                  +   DG  
Sbjct: 422 IGEAAFYGPKLDFI---VQDALEREWQLGTVQVDYNLP--------ERFDLEYVAEDGTR 470

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +     G++  +  ++   + G   +W          ++ +           E +
Sbjct: 471 QRPVMIHRAPFGSLERLIGILIEEYTGDFPLW------LAPVMVRLLPVSDEFLPFVESV 524

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +   +      D   +++G     A+    P+  +VG+K V  + + I+ R  G    
Sbjct: 525 AEKWRSLDIRAEADHSHDRLGKMIRNAEKAKVPVMAVVGAKEVESNSLSIRTRALGELGT 584

Query: 429 MSLEEVINYASHRFSN 444
           +++ E  +      +N
Sbjct: 585 LTVAETQSRLQFALAN 600


>gi|119631208|gb|EAX10803.1| threonyl-tRNA synthetase, isoform CRA_a [Homo sapiens]
          Length = 619

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 147/445 (33%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 202 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 259

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 260 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 318

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 319 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 377

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 378 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 419

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 420 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 468

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 469 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 524

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K      V
Sbjct: 525 --TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTV 582

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R   +  + ++ E I      
Sbjct: 583 NIRTRDNKVHGERTISETIERLQQL 607


>gi|114600754|ref|XP_001153291.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic isoform 1 [Pan
           troglodytes]
          Length = 619

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 147/445 (33%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 202 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 259

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 260 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 318

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 319 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 377

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 378 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 419

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 420 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 468

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 469 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 524

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K      V
Sbjct: 525 --TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTV 582

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R   +  + ++ E I      
Sbjct: 583 NIRTRDNKVHGERTISETIERLQQL 607


>gi|326792022|ref|YP_004309843.1| threonyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326542786|gb|ADZ84645.1| threonyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 657

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 154/441 (34%), Gaps = 36/441 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD      +L L T    +  +G+   +P G + +  +   + +E+ + G +  
Sbjct: 235 LEEAKKRDHNKLGRELKLFTT-DEKVGQGLPLLMPKGARIVQTLQRFVEDEEEKRGYVLT 293

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
             P +  +DL+  SG +D Y   M      +++ +     P        ++ +   SYR+
Sbjct: 294 KTPLMAKSDLYKMSGHWDHYKDGMFVLGDEEKDKEVFALRPMTCPFQFTVYNAEQHSYRD 353

Query: 128 LPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP  + +    FR+E      G++R R+F + + +    TPE  +  +  +      +  
Sbjct: 354 LPIRYGETSTLFRNESSGEMHGLIRVRQFTISEGH-LVCTPEQLEDEFRGVIELINYMMA 412

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
            LG            I  D+S+ F         +     +  +          D +    
Sbjct: 413 TLG------------IENDISYRFSKWDPANTGKYINDPEAWERTEGLMRNILDHLQINY 460

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
                  A Y    D+  + +     +   +    I+       G         T+  AD
Sbjct: 461 EEAVGEAAFYGPKLDIQFKNVH---GKEDTIITVQIDFALGERLG--------MTYIDAD 509

Query: 307 GKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           G+  H + +    IG      A++    +     +P  +AP  + ++ +        D  
Sbjct: 510 GEKKHPLIIHRTSIGCYERTLAMLI---EKYAGQFPTWLAPVAVKVLPLSDK---YADYA 563

Query: 366 EKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++       G   V  D   E+IG +   A +   P  V+VG++ + +  V ++ R  G
Sbjct: 564 AEVVKAFKDHGILKVEADYRTEKIGYKIREARMERIPYIVVVGAEEMENKTVSVRSRQKG 623

Query: 425 IREDMSLEEVINYASHRFSNN 445
                SLE  +N         
Sbjct: 624 DEGVQSLESFVNRVDEEIKTK 644


>gi|315500848|ref|YP_004079735.1| prolyl-tRNA synthetase [Micromonospora sp. L5]
 gi|315407467|gb|ADU05584.1| prolyl-tRNA synthetase [Micromonospora sp. L5]
          Length = 589

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 99/236 (41%), Positives = 137/236 (58%), Gaps = 1/236 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S   L  L+E+P DAE+ SH+L+LR G + + + G Y+WLPLG+  LD + AI+R+E 
Sbjct: 4   RMSTLLLRTLREDPADAEVPSHRLLLRAGYVRRAAPGGYTWLPLGKLVLDRITAIVRDEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P L  A+ +  SGR+  YG ++  LADR     +  PTHEE+   + +  
Sbjct: 64  TGIGDQEVHFPALLPAEPYRTSGRWTEYGDDIFTLADRKGAEHLLAPTHEELAALLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SYR+ P T +QIQ KFRDE RPR G++R REFLMKDAYSFDL   G + +Y++   +Y
Sbjct: 124 FTSYRDFPVTLFQIQTKFRDEARPRAGLLRGREFLMKDAYSFDLDEAGLQAAYDRHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            R+F RLGL    + A SG +GG  S EF+     GE          D+   +E  
Sbjct: 184 ERVFTRLGLDFTTVHAMSGAMGGSASEEFLAATPVGEDTFVGCTAC-DYAANTEAV 238



 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 7/188 (3%)

Query: 258 ATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
            T +    +  DS P   + +    RGIE+GHIF  G +Y+   +    G +GK     M
Sbjct: 396 GTIEAAEVRPGDSCPACADGELTIRRGIEIGHIFQLGRRYTDAFAVDVLGPEGKPVRPTM 455

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R VAAV E  HD +G++WP +VAP  + LI          DA   +  RL+ 
Sbjct: 456 GCYGIGVSRAVAAVAEQHHDDRGLVWPAAVAPCDVHLIAAGKG--PQLDAALDLGGRLAA 513

Query: 375 VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V  DD      G +F  A+L+G P  V+VG + +++  VE++ R TG R ++ +E 
Sbjct: 514 AGLRVLVDDRTHVSAGVKFTDAELIGIPRAVVVGRR-LAEGYVELRDRATGERTELPVEA 572

Query: 434 VINYASHR 441
           ++      
Sbjct: 573 IVERLRDE 580


>gi|302864555|ref|YP_003833192.1| prolyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|302567414|gb|ADL43616.1| prolyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
          Length = 589

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 99/236 (41%), Positives = 137/236 (58%), Gaps = 1/236 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S   L  L+E+P DAE+ SH+L+LR G + + + G Y+WLPLG+  LD + AI+R+E 
Sbjct: 4   RMSTLLLRTLREDPADAEVPSHRLLLRAGYVRRAAPGGYTWLPLGKLVLDRITAIVRDEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P L  A+ +  SGR+  YG ++  LADR     +  PTHEE+   + +  
Sbjct: 64  TGIGDQEVHFPALLPAEPYRTSGRWTEYGDDIFTLADRKGAEHLLAPTHEELAALLVKDL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SYR+ P T +QIQ KFRDE RPR G++R REFLMKDAYSFDL   G + +Y++   +Y
Sbjct: 124 FTSYRDFPVTLFQIQTKFRDEARPRAGLLRGREFLMKDAYSFDLDEAGLQAAYDRHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            R+F RLGL    + A SG +GG  S EF+     GE          D+   +E  
Sbjct: 184 ERVFTRLGLDFTTVHAMSGAMGGSASEEFLAATPVGEDTFVGCTAC-DYAANTEAV 238



 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 7/188 (3%)

Query: 258 ATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
            T +    +  DS P   + +    RGIE+GHIF  G +Y+   +    G +GK     M
Sbjct: 396 GTIEAAEVRPGDSCPACADGELTIRRGIEIGHIFQLGRRYTDAFAVDVLGPEGKPVRPTM 455

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R VAAV E  HD +G++WP +VAP  + LI          DA   +  RL+ 
Sbjct: 456 GCYGIGVSRAVAAVAEQHHDDRGLVWPAAVAPCDVHLIAAGKG--PQLDAALDLGGRLAA 513

Query: 375 VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V  DD      G +F  A+L+G P  V+VG + +++  VE++ R TG R ++ +E 
Sbjct: 514 AGLRVLVDDRTHVSAGVKFTDAELIGIPRAVVVGRR-LAEGYVELRDRATGERTELPVEA 572

Query: 434 VINYASHR 441
           ++      
Sbjct: 573 IVERLRDE 580


>gi|55379994|ref|YP_137844.1| threonyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|55232719|gb|AAV48138.1| threonyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 672

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 148/445 (33%), Gaps = 44/445 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           ++     +   RD      ++ L +  I +    G+  + P G+K L+ ++  +      
Sbjct: 260 EFLEQRRKAEERDHRKIGQEMDLFS--IDETTGPGLPLYEPNGKKILNELSDYVAGLNRD 317

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +   +LW +SG Y++Y  +M  L D ND+     P +      IF  +  
Sbjct: 318 AGYDEVETPHVFRTELWKKSGHYENYVDDMF-LLDVNDEEYGLKPMNCPGHATIFEQNSW 376

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  +++    +R E R    G+ R+  F + D +   + P+  +          L
Sbjct: 377 SYRDLPVRYFEDGKVYRKEQRGELSGLSRTWAFTIDDGH-LFVRPDQIEEEVLATVDIIL 435

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                  L      A                  T   +     +  +       +  ++ 
Sbjct: 436 DTLDTFNLDYTVQFA------------------TRPEKSVGGDEIWEKAESQLESVLEEQ 477

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                + E   A Y    D   E   D+L  +          G               ++
Sbjct: 478 DIDYVVEEGDGAFYGPKIDFAFE---DALGRHW--------DGPTVQLDFNMPERFDLSY 526

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D ++H    +     G+      V+    +     +P  +AP +I L+ +   +   
Sbjct: 527 TGEDNEEHRPVMIHRALYGSYERFFMVLT---EHYNGKFPPWLAPEQIRLLPVSDDN--- 580

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              CE+I   L      V  +D    +G +   A     P   ++G        + ++ R
Sbjct: 581 ITYCEEIQDELDD--FRVTIEDRSWTVGKKIQQAHDDRVPYMCVIGDNEEEAGTISVRDR 638

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                +D+ + E  ++        R
Sbjct: 639 KEREEKDIDIAEFRDHLETEVEQQR 663


>gi|15616855|ref|NP_240068.1| prolyl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|11134948|sp|P57333|SYP_BUCAI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|25293219|pir||B84958 proline-tRNA ligase (EC 6.1.1.15) [imported] - Buchnera sp.
           (strain APS)
 gi|10038919|dbj|BAB12954.1| prolyl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 572

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 113/292 (38%), Positives = 167/292 (57%), Gaps = 7/292 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+Y L   ++ P DA+I SH+LM+R+GMI + S G+Y WLP G + L  +  II  E
Sbjct: 1   MLTSQYLLSTSKDIPYDAKIISHQLMIRSGMIRKTSSGLYVWLPTGMRVLKKIKNIITTE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A+E+ +P +Q   LW ES R + YG+E+LR  DR     I GPT+EEV+T+   S
Sbjct: 61  MEKINALEILMPIIQPEYLWKESRRLNLYGEELLRFLDRRKNQFILGPTNEEVVTNFIGS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP T YQIQ KFRDE+RPRFG++R+REF MKDAYSF +     +++YNK + S
Sbjct: 121 EIHSYKQLPLTVYQIQTKFRDEIRPRFGIIRTREFTMKDAYSFHINQSCLENTYNKFYDS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC-----SKDFMDFPIPSE 235
           Y+ IF ++ L    ++A+SG +GG++SHEF   +  GE ++           M+     E
Sbjct: 181 YINIFKKMNLNFCAVKADSGSMGGNISHEFQAFSQNGEDEIVFSNDKLYSSNMNMAESIE 240

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
             DF      + +++  T      S + +EKL   L    +      ++  I
Sbjct: 241 TIDFFKKKYSSCLIKNKTN--TKKSIIMSEKLNTPLINQIQTFLIQTKINDI 290



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 3/193 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARG--IEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P     D+      D  P           IE+GHIF  G KYS  +  + K  +G    +
Sbjct: 380 PMPIFKDIRKVTKNDLSPNGSGYLNIKQSIEIGHIFQLGQKYSRKIQQSVKIKNGNLKNL 439

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R+ AAVIE  HD  GIIWPDS+APF++ ++ I    D   +     +Y +
Sbjct: 440 YMGCYGIGITRIAAAVIEQHHDKNGIIWPDSIAPFEVVILPINMKKDNKIKIIAHFLYKK 499

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             K G DV  DD  E+ G  F   DL+G P Q+I+  + ++   VE + R       +++
Sbjct: 500 FKKTGIDVILDDRDERPGVMFNEVDLIGIPHQIIISKRSINYDNVEYRERKNKENILINI 559

Query: 432 EEVINYASHRFSN 444
           +++ N+   +   
Sbjct: 560 KDIKNFIIQKLKK 572


>gi|296394216|ref|YP_003659100.1| threonyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
 gi|296181363|gb|ADG98269.1| threonyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
          Length = 683

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/437 (14%), Positives = 129/437 (29%), Gaps = 49/437 (11%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R +    G   ++ 
Sbjct: 257 EAERRDHRKLGAELDLFS-FPDELGSGLPVFHPKGGVLRKELEDYSRAKHIEAGYEFVNT 315

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDIFR 119
           P +  + L+  SG  D Y   M                 +  +     P +  +   IFR
Sbjct: 316 PHITKSHLYEVSGHLDWYADGMFPPMHVDEELHEDGSVRKPGQDYYLKPMNCPMHNLIFR 375

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP   ++    +R E      G+ R R     DA+ +    +      +   
Sbjct: 376 SRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYCTRAQMKDEL-STTL 434

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    GL    +   +                  E +   + +       + +  
Sbjct: 435 QFVLDLLRDYGLDDFYLELST----------------KDEQKFVGADEIWAEATRTLSEV 478

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +             A Y       + +  D+L    ++S   ++    F    ++    
Sbjct: 479 AEASGLTLVPDPGGAAFYGPKI---SVQAKDALGRTWQMSTIQLD----FNLPERFD--- 528

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              + G  G       +     G++     V+   + G   +W   +AP ++  I +   
Sbjct: 529 -LEYTGPSGHKERPVMIHRALFGSIERFIGVLVEHYAGAFPMW---LAPVQVMGIPV--- 581

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +       +    L   G     D   +++  +         P  V+ G + V    V 
Sbjct: 582 SEDHVPHLREFVDSLRAGGVRAHIDSSDDRMQKKIFTHTAQKIPFLVLAGGRDVEAQTVS 641

Query: 418 IKHRLTGIREDMSLEEV 434
            + R    R  + + E 
Sbjct: 642 FRFRDGSQRNAVPVAEA 658


>gi|229828744|ref|ZP_04454813.1| hypothetical protein GCWU000342_00810 [Shuttleworthia satelles DSM
           14600]
 gi|229793338|gb|EEP29452.1| hypothetical protein GCWU000342_00810 [Shuttleworthia satelles DSM
           14600]
          Length = 597

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 141/448 (31%), Gaps = 49/448 (10%)

Query: 9   PILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            +L+E   RD +     L L   M H+ + G+  WLP G K  + +    R    R   +
Sbjct: 174 RLLREAKERDHKKLGPALELF--MFHESAPGMPYWLPRGWKLFNALLDYWRSVHERHNYL 231

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA---MIYGPTHEEVMTDIFRSHIKS 124
           E++ P + +  LW  SG +  Y + M  +    +         P +       +++ ++S
Sbjct: 232 EIAAPVINNQKLWATSGHWGHYKENMFIIPGEKEDESDYYAAKPMNCPNAIMFYKNGLRS 291

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LPF   Q+ +  R E      G+ R + F   DA+      + +        +S   
Sbjct: 292 YRDLPFRVSQVDVIHRKEKSGELNGLFRVQMFRQDDAHILVTEDQIASE--IADIMSIAD 349

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
             +     S      + P            A+    ++  +                   
Sbjct: 350 EIYSTFGLSFRAELSTRPDDFMGDIATWDKAEAELREILDNMYGE--------------- 394

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D+   ++ D+L    ++    ++      FG KY+       +
Sbjct: 395 GNYDVNEGDGAFYGPKIDL---QMKDALGREWQMGTIQLDFQLPLNFGLKYAA------Q 445

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               K   +   +      R +  +IE+                                
Sbjct: 446 DGSEKQPVLIHRAIFGSMERFIGILIENFKGSFPFWVSPYQVGIVPIRT-------SHNA 498

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EKI   L  +G  V  D   + +  +      L  P  +++G K V +  V +  R  
Sbjct: 499 YAEKIQEELRSMGIRVEADYADKNMNEKIKRFRTLRDPYTLVIGDKEVENGTVSVTVRGQ 558

Query: 424 GIR-EDMSLEEV--------INYASHRF 442
             +  D+ L +         + +     
Sbjct: 559 KQQIHDLPLADFCAMCRKLQVEHLKDLL 586


>gi|255560023|ref|XP_002521030.1| threonyl-tRNA synthetase, putative [Ricinus communis]
 gi|223539867|gb|EEF41447.1| threonyl-tRNA synthetase, putative [Ricinus communis]
          Length = 691

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 144/417 (34%), Gaps = 38/417 (9%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  +Y   + +    D  +   K  L     HQ S G + +LP G +  + +   IR + 
Sbjct: 306 RLKEYIQQLEEAKKYDHRLLGTKQELF--FCHQLSPGSWFFLPHGTRIYNKLMDFIRVQY 363

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P + +  LW  SG   +Y + M  L +   +     P +      IF+  
Sbjct: 364 RERGYEEVKSPNIYNMKLWETSGHAANYKENMF-LLEIEKQEFGLKPMNCPGHCVIFQHR 422

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++SYR LP       +  R+E      G+ R R F   DA+ F       K     +   
Sbjct: 423 VRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCR-ETQIKDEVTGVLNF 481

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
               +   G     ++  + P                  +        +    S  +  D
Sbjct: 482 IDYAYKIFGFTY-DLKLSTRP-----------------EKYLGDLATWEKAESSLKSALD 523

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D      I E   A Y    D+    + D+L    + +   ++    F    ++ L  SA
Sbjct: 524 DFGKPWQINEGDGAFYGPKIDI---SVSDALNRKFQCATLQLD----FQLPDRFELEYSA 576

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                  ++  V +    +G++  + A++    +     WP  ++P +  +  +    Q 
Sbjct: 577 E--DEAKRERPVMIHRAILGSVERMFAILL---EHYKGKWPFWLSPRQAIVCPVSEKSQ- 630

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +   ++  ++ K G  +  D    +I  +   A L  +   ++VG +     +V 
Sbjct: 631 --EYAVQVQDQIHKAGYYIDVDLTDRKIQKKVREAQLAQYNYILVVGEEEAKTGQVA 685


>gi|46190981|ref|ZP_00120791.2| COG0442: Prolyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|317482435|ref|ZP_07941452.1| prolyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916095|gb|EFV37500.1| prolyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 594

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 105/280 (37%), Positives = 154/280 (55%), Gaps = 2/280 (0%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            FL  L+E+P DA++ S KL+ R G I + + GI++WLPLG + L+ + AIIREE N  G
Sbjct: 1   MFLRTLREDPADADVDSAKLLQRAGYIRKAAPGIWTWLPLGLRVLNKIEAIIREEINGIG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A E+  P L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +    SY
Sbjct: 61  AQEVHFPALLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDMYSSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           ++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG + +Y     +Y RIF
Sbjct: 121 KDLPVTLYQIQTKYRDEFRPRAGLIRGREFVMKDAYSFTIDEEGMRKAYYDERGAYERIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF--DDII 243
            RL LK +P+ A SGP+GG  S EF+     GE     +     + + + +T    +   
Sbjct: 181 QRLDLKYVPVFAMSGPMGGSASEEFLAPMPIGEDTFALAPSGKAWNVEALSTPELPEIDA 240

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           S      +   P A T D   E+     P       +  +
Sbjct: 241 STTPAASKEATPDAKTIDNMIERANADHPRTDGREWQASD 280



 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 4/191 (2%)

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLP 297
           ++ +   ++V           +    +  D  P+        RG+E+G +F  G KYS  
Sbjct: 386 ENEVDYYNLVYGRDFKADGVVEAVEVRHGDMSPDGSGPLSFERGVEIGQVFQLGLKYSKA 445

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +       +GK   V MG YGIG  RV+A + E+ HD  G+ W  SV       +     
Sbjct: 446 LDLKVLDQNGKAVPVWMGCYGIGVSRVLACIAETHHDEAGLAW-PSVIAPAAVHVVATGK 504

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           D V  +  EK+ A L   G +V +DD  +   G +F  A+L+G PL  +VG  +V+D  +
Sbjct: 505 DAVAFEGAEKLVAELEAKGLEVIYDDRKKVSPGVKFKDAELIGVPLVAVVGRDYVNDGTI 564

Query: 417 EIKHRLTGIRE 427
           E++ R    + 
Sbjct: 565 ELRDRNGENKV 575


>gi|256832610|ref|YP_003161337.1| threonyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
 gi|256686141|gb|ACV09034.1| threonyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
          Length = 673

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/459 (14%), Positives = 132/459 (28%), Gaps = 47/459 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++   + +   RD      ++ L +    +   G+  + P G      +    R    
Sbjct: 249 LTEHLTRLAEAERRDHRRLGVEMDLFS-FPDEMGSGLAVFHPRGGVVRLEMEEYSRRRHI 307

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTH 110
             G   ++ P +    L+  SG  D Y + M                 +  +     P +
Sbjct: 308 EAGYSFVNSPHITKGRLYEVSGHLDWYREGMYPAMHMDEERDADGTLRKQGQDYYLKPMN 367

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
             +   IF +  +SYR LP   ++    +R E      G+ R+R F   DA+ +    + 
Sbjct: 368 CPMHNLIFDARGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIYCTKEQM 427

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                       L +    GL    +   +                        + +  D
Sbjct: 428 KDEL-TNALTFVLDLLKDYGLDDFYLELSTRDPEKS----------------VGTDEIWD 470

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
               +      D            A Y       + +  D++    ++S   ++    F 
Sbjct: 471 EATRTLEEVAQDSGLELVPDPGGAAFYGPKI---SVQAKDAIGRTWQMSTIQLD----FN 523

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
              K+ L   A       +   V +     G++    AV+   + G+  +W   V    +
Sbjct: 524 LPEKFDLEYQAA---DGTRQRPVMIHRALFGSIERFFAVLLEHYAGQFPVWLAPVQVLAV 580

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +           D      A L   G     DD  ++   +   A     P  VI G +
Sbjct: 581 PVA------DAFNDYLGDFVAELRTRGVRAELDDSSDRFPKKVRNASTSKVPFTVIAGGE 634

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
                 V  ++R       +  E+ I       S    V
Sbjct: 635 DEQAGAVSFRYRDGSQENGIPREQAITRILESISTRAQV 673


>gi|300781050|ref|ZP_07090904.1| threonine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
 gi|300532757|gb|EFK53818.1| threonine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
          Length = 701

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/459 (13%), Positives = 137/459 (29%), Gaps = 53/459 (11%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +  +L+E   RD      ++ L +    +   G+  + P G      +    R+     G
Sbjct: 268 YQHMLEEAEKRDHRRLGAEMDLFS-FPDEVGSGLPVFHPDGGIVRMEMENHSRKRHLEAG 326

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTHEEV 113
              ++ P +   DL+ +SG  D Y   M      + +                 P +   
Sbjct: 327 YSFVNTPHVTKGDLFQQSGHLDWYADGMFPPMQLDGEWDEDGNCVKQPVDYYAKPMNCPF 386

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKH 172
              IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  + 
Sbjct: 387 HNLIFDSRGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYC-TEDQLEQ 445

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    + +    GL    +   +                    +     D  +   
Sbjct: 446 ELTDVLEFIISLLQDYGLDDFYLELST----------------KDPEKYIGDDDIWERST 489

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
               +                A Y       + +  D++    ++S   ++    F    
Sbjct: 490 NILESVATRSGLELVPDPAGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLPD 542

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++    +  +  +DG       +     G++     V+   + G    W        I +
Sbjct: 543 RF----NLEYTSSDGTKQRPVMIHRALFGSIERFFGVLLEHYAGAFPAWLAPRQVVGIPV 598

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                         + +  +L K G     D   +++  +         P  ++ G++ V
Sbjct: 599 A------DEFAPHLDAVTDKLRKRGIRASVDHSDDRMQKKIRNHTTGKVPFMLLAGARDV 652

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF---SNNRP 447
               V  +         + ++E I   S      +N +P
Sbjct: 653 EADAVSFRFLDGSQVNGVPVDEAIELISQWVDGQNNEQP 691


>gi|224373093|ref|YP_002607465.1| prolyl-tRNA synthetase [Nautilia profundicola AmH]
 gi|254782910|sp|B9LA07|SYP_NAUPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|223588823|gb|ACM92559.1| prolyl-tRNA synthetase [Nautilia profundicola AmH]
          Length = 574

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 115/291 (39%), Positives = 165/291 (56%), Gaps = 1/291 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++F    +E P+DA +ASHK ++R G I Q + GIY + PLG+  LDN+  II++E
Sbjct: 1   MRWSRFFAYTQKEAPKDAVVASHKYLVRGGYIKQVAAGIYDFAPLGKMVLDNIRDIIKKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA E+ +  +   +LW E+GR   YGKE+LR+ DR D++ +  PT+EE + D+ R 
Sbjct: 61  MDASGAQEVMLTFVTPNELWEETGRAKKYGKELLRIKDRKDQSFVLAPTNEESVVDLVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI LKFRDE RPRFG++R REF+MKDAYSF  T E     +N M  +
Sbjct: 121 TIKSYKQLPVNLYQINLKFRDEARPRFGLLRGREFIMKDAYSFHATEEDLDREFNLMEET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF +LGL    + A+SG IGG  S EF+VLADTGE  +    +  D+    E     
Sbjct: 181 YKNIFTKLGLDFRAVWADSGAIGGSGSKEFMVLADTGEDDIVVCSEC-DYAANIEVATRK 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                N +  +             E + + +  +   S + +    I+  G
Sbjct: 240 HEKRENPVKTEVIEEVHTPDMKSIEDVCNFIGVDPYFSIKAVVKKAIYDDG 290



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 105/220 (47%), Gaps = 3/220 (1%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEV 284
             +  +   N     I     +            D+   K  D  P+        +GIEV
Sbjct: 356 MAEELVCGANKKDYHIKGAGLLDANLLGNLTVYRDIAAVKEGDKCPKCGAPLKITKGIEV 415

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  GT YS PM+ATF   +GK     MG YGIG  R+++A IE +HD KGIIWP  +
Sbjct: 416 GHIFKLGTVYSEPMNATFLDENGKAKPFIMGCYGIGVSRLISAAIEQNHDDKGIIWPKQI 475

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           APF + +I             E +Y +L+  G     DD  E+ G + A  +L+GFP+ V
Sbjct: 476 APFVVDIIVGDVKKDEQLIFAEDLYDKLTSAGVKTILDDRAERFGPKIADFELVGFPVCV 535

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           IVG K + D KVE++ R TG + ++  +  +       +N
Sbjct: 536 IVGKK-LKDGKVEVRDRRTGEKFEVEKDMALEKVMEIINN 574


>gi|300711550|ref|YP_003737364.1| threonyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
 gi|299125233|gb|ADJ15572.1| threonyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
          Length = 640

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/446 (16%), Positives = 134/446 (30%), Gaps = 45/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           ++     Q   RD      ++ L +  +  HS G   + P G      +   IR + +  
Sbjct: 229 EFLDRREQAKERDHRKIGREMDLFS--VPDHSPGCPHYHPNGMTIRRELEEYIRTQNDAL 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           G  E+  P L   +LW ESG  D +G E      + N+      P +      I+   ++
Sbjct: 287 GYEEVRTPELNKKELWEESGHLDFFGSEGEFFLWEENETEYGLKPMNCANHAYIYDQQVR 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  F +    +R+E      G++R R     D ++F    +        + V   
Sbjct: 347 SYRDLPVRFSEFGNVYRNEQSGELSGLLRVRGMTQDDGHAFIRRDQIQTEITETLRVI-- 404

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                              I      E +   +T       S +       +     +  
Sbjct: 405 -----------------EEIYEQFDFEVLYKLETKGDHAVGSDEVWAEATEALRNALEAE 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                + E   + Y     +      D+L     +    ++              +  ++
Sbjct: 448 GLEYDVEEGEASFYGPKIGLD---ARDTLGREWTIGTVQLDFNIP--------ERLDLSY 496

Query: 303 KGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            G D ++H   M    +     R +  +IE  +                           
Sbjct: 497 TGEDNEEHRPVMVHRALLGSFERFMGVMIEHFNGKFPTWLAPEQVRILPI-------SDD 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                E+I   LS     V  +D    IG +   A     P  +IVG    +   + ++ 
Sbjct: 550 NVAYAEEIREVLSD--FRVGIEDRSWTIGKKIQTAHDDRVPYMLIVGGNEEAAGTISVRD 607

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R    R D+S EE            R
Sbjct: 608 RFERERGDVSPEEFRTALETEVEEKR 633


>gi|289674658|ref|ZP_06495548.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
          Length = 172

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 90/168 (53%), Positives = 123/168 (73%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L   +E P DA + SH+LMLR GMI + + G+Y+WLP+G + L  V AI+REE
Sbjct: 1   MRTSQFLLATQKETPSDAVVVSHQLMLRAGMIRKLASGLYTWLPMGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+ +P +Q A+LW ESGR++ YG E++RL DR+++    GPTHEEV+TD+ R+
Sbjct: 61  MDAAGALEILMPGIQPAELWQESGRWEQYGPELMRLVDRHNREFCLGPTHEEVITDLARN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
            + SY+ LP   YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E
Sbjct: 121 ELNSYKQLPINLYQIQTKFRDEIRPRFGLMRGREFVMKDAYSFHADHE 168


>gi|315653428|ref|ZP_07906350.1| proline--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|315489353|gb|EFU78993.1| proline--tRNA ligase [Lactobacillus iners ATCC 55195]
          Length = 487

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 109/273 (39%), Positives = 143/273 (52%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 16  MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 75

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 76  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 135

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 136 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 195

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++              D
Sbjct: 196 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNETGTYSANLEMARSID 255

Query: 241 DI---ISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                      +E+   P  AT +  +E L   
Sbjct: 256 TFSPEKEELKPLEKVATPDCATIEQLSEFLHVP 288



 Score = 45.9 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 42/97 (43%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     N    D +          IEVGHIF  GT Y+  M+A F   +GK  
Sbjct: 391 DFKVNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQ 450

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + MGSYGIG  R+++A++E      GI        F
Sbjct: 451 PIIMGSYGIGVTRMLSAIVEQHSTDNGIFLAKRSCSF 487


>gi|38233973|ref|NP_939740.1| threonyl-tRNA synthetase [Corynebacterium diphtheriae NCTC 13129]
 gi|73919783|sp|Q6NGW2|SYT_CORDI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|38200235|emb|CAE49919.1| threonyl-tRNA synthetase [Corynebacterium diphtheriae]
          Length = 687

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/455 (14%), Positives = 137/455 (30%), Gaps = 49/455 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y L + +   RD      +L L +    +   G   + P G      +    R      
Sbjct: 254 EYQLMMAEAEKRDHRRLGAELDLFS-FPDEIGSGFPVFHPNGGIVRLEMEEHSRRRHINA 312

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND------------KAMIYGPTHEE 112
           G   ++ P +   DL+ +SG  D Y   M      +             +     P +  
Sbjct: 313 GYSFVNTPHITKGDLFKKSGHLDFYADGMFPPMQLDGEVDEEGNVVKQAQDYYAKPMNCP 372

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSK 171
           +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  +
Sbjct: 373 MHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIYC-TEDQLE 431

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                +    + +    GL    +   +                    +   S +  +  
Sbjct: 432 QELTSVLDFIISLLRDYGLDDFYLELST----------------KDPNKFVGSDEIWEKS 475

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
                                 A Y       + +  D++    ++S   ++    F   
Sbjct: 476 TSILQRVATKSGLELVPDPAGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLP 528

Query: 292 TKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            ++    +  +  +DG K   + +     G++     V+   + G    W        I 
Sbjct: 529 ERF----NLEYTSSDGSKKRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVIGIP 584

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +           +  EK+   L   G     D   +++  +         P  ++ G++ 
Sbjct: 585 VA------DSFSEHLEKVTGMLRDNGVRASVDTSDDRMQKKIRNHTTGKVPFMLLAGARD 638

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  + V  +         + +++ I   +   S+ 
Sbjct: 639 VEANAVSFRFLDGTQINGVPVDKAIGVITQWISSR 673


>gi|300858607|ref|YP_003783590.1| threonyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686061|gb|ADK28983.1| Threonyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206319|gb|ADL10661.1| Threonyl-tRNA synthetase [Corynebacterium pseudotuberculosis C231]
 gi|302330876|gb|ADL21070.1| Threonyl-tRNA synthetase [Corynebacterium pseudotuberculosis 1002]
 gi|308276561|gb|ADO26460.1| Threonyl-tRNA synthetase [Corynebacterium pseudotuberculosis I19]
          Length = 689

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 63/448 (14%), Positives = 130/448 (29%), Gaps = 49/448 (10%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G   + P G      +    R      G   ++ 
Sbjct: 261 EAEKRDHRRLGAELDLFS-FPDEIGSGFPVFHPNGGVVRLEMEEHSRRRHIAAGYSFVNT 319

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRND------------KAMIYGPTHEEVMTDIFR 119
           P +   DL+ +SG  D Y   M      +             +     P +  +   IF 
Sbjct: 320 PHITKGDLFKKSGHLDFYADGMFPPMQLDGEIDEDGNVTKQAQDYYAKPMNCPMHNLIFA 379

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  +     + 
Sbjct: 380 SRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIYC-TEDQLEAELTSVL 438

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              + +    GL    +   +                    +   S +  D         
Sbjct: 439 DFIISLLKDYGLDDFYLELST----------------KDPNKFVGSDEIWDLSTSILERV 482

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                          A Y       + +  D++    ++S   ++    F    ++    
Sbjct: 483 ATQSGLELVPDPAGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLPERF---- 531

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           +  +   DG       +     G++     V+   + G    W        I +      
Sbjct: 532 NLEYTAPDGSKRRPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPHQVIGIPVA----- 586

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  E++ A+L + G     D   +++  +         P  V+ G++ V    V 
Sbjct: 587 -DAFVDHLEEMMAQLRQRGIRADVDTSDDRMQKKIRNHTTGKVPFMVLAGARDVEAGAVS 645

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
            +         + +E+ +        + 
Sbjct: 646 FRFLDGTQVNGVPVEKAVEIIDQWIRSR 673


>gi|189055088|dbj|BAG38072.1| unnamed protein product [Homo sapiens]
          Length = 711

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 147/445 (33%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 294 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 351

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 352 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 410

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 411 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 469

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 470 FLRAVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 511

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 512 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 560

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 561 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 616

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K      V
Sbjct: 617 --TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFTLVVGEKEKISGTV 674

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R   +  + ++ E I      
Sbjct: 675 NIRTRDNKVHGERTISETIERLQQL 699


>gi|134292577|ref|YP_001116313.1| threonyl-tRNA synthetase [Burkholderia vietnamiensis G4]
 gi|134135734|gb|ABO56848.1| threonyl-tRNA synthetase [Burkholderia vietnamiensis G4]
          Length = 402

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 76/426 (17%), Positives = 137/426 (32%), Gaps = 41/426 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  +  +KL L        S G   W P G      +   IR    + G  E+  P + S
Sbjct: 5   DHRVLGNKLDLF--HQQDESPGGIFWHPRGMVLYRVIEEYIRVRMRQAGFSEVRTPQILS 62

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            DLW  SG ++ +G  M  L + +       P        IF+   +SYR+LP  + +  
Sbjct: 63  RDLWERSGHWEKFGPNMFSL-ESDRNPYCLKPMSCPCHVQIFKKGSRSYRDLPIRYCEFG 121

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R E      G+MR+R F   DA+   L P+  +    +       I+   G     +
Sbjct: 122 AVHRAEPSGALHGLMRARAFTQDDAHVLCL-PDQIEDEVARFCKLLKAIYADFGFGECDV 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              + P                           D       +         +I+    A 
Sbjct: 181 ALSTRPPVR-----------------AGDDAVWDRSEAMLASAARAAGLEFAILAGEGAF 223

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQM 314
           Y    + H   L D      +     ++       G        A++   DG     V +
Sbjct: 224 YGPKLEFH---LVDRQGRKWQCGTIQLDFVLPERLG--------ASYVAEDGAKATPVML 272

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               +G++     ++   ++G    W         ++          R   ++  +    
Sbjct: 273 HHAVLGSLERFIGILLEHYEGWLPTWLAPDQIVVANIG------DDHRAFADRAASAFED 326

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +GC V  D   E++  +   A  L  P+  I G K     +V ++ R  G +  M+++  
Sbjct: 327 IGCRVLRDFRAERLPRKIFDATELAAPIVAIAGRKEALAGEVSLRMRG-GEQHVMTIDAA 385

Query: 435 INYASH 440
           + +   
Sbjct: 386 LAFLKQ 391


>gi|260940036|ref|XP_002614318.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238852212|gb|EEQ41676.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 722

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 78/452 (17%), Positives = 159/452 (35%), Gaps = 42/452 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +  L     ++ S G   WLP G +  + +  ++REE  + G 
Sbjct: 303 LKFLKEASERDHRKIGKEQELF--YFNEVSPGSAFWLPHGTRIYNTLVDMLREEYRQRGY 360

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW  SG + +Y + M       D      P +      +F+S  +SYR
Sbjct: 361 EEVITPNMYNTKLWEISGHWGNYKENMFSFEVEKDT-FGLKPMNCPGHCVLFKSRERSYR 419

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP+      +  R+E      G+ R R F   DA+ F    +  +     +F    +++
Sbjct: 420 ELPWRVADFGVVHRNEFSGALSGLTRVRRFQQDDAHIFCEQDQIEQE-IAGVFDFLQKVY 478

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G +       + P       E    A+                  + N    +    
Sbjct: 479 GTFGFEFKM-ELSTRPEKYVGDLETWNGAEKNL-------------ENALNKFMGE--GK 522

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             +     A Y    D+   K+ D+L    + +   ++      F  +Y    ++     
Sbjct: 523 WELNPGDGAFYGPKIDI---KISDALRRWFQCATIQLDFQMPQRFELEYKRDSNSK---E 576

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           +     V +    +G++  + A++    +     WP  ++P +I ++ +        +  
Sbjct: 577 NSMARPVMIHRAILGSVERMTAILT---EHYKGKWPFWLSPRQILVVPVGVK---YFEYA 630

Query: 366 EKIYARL-SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           E++   L  K       D  G  +  +     +L +    IVG +  ++  V I++R   
Sbjct: 631 EQLKDELVKKHKFYADVDLSGNTLQKKVRNGQMLKYNFIFIVGEQEQAEHSVNIRNRDIQ 690

Query: 425 IRE----DMSLEEVIN---YASHRFSNNRPVL 449
             +     +  EEV+           ++  ++
Sbjct: 691 EEQGKNATVKFEEVVAQLTKLKEELRSDNKLI 722


>gi|325679048|ref|ZP_08158642.1| threonine--tRNA ligase [Ruminococcus albus 8]
 gi|324109172|gb|EGC03394.1| threonine--tRNA ligase [Ruminococcus albus 8]
          Length = 648

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 141/445 (31%), Gaps = 38/445 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  ++E   RD      +L   T  +    +G+   LP G K +  +   I +E+ R G 
Sbjct: 233 LKQMEEAKLRDHNKLGRELDYFTT-VDYIGQGLPILLPKGAKVIQTLQRWIEDEEYRRGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEML---RLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
                P +   +L+  SG +D Y   M       D   +     P        +F +  +
Sbjct: 292 QLTKTPFMSKRELYKISGHWDHYRDGMFILGDPDDETKECFALRPMTCPFQYQVFLNRKR 351

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +    FR E      G++R R+F + + +      +              
Sbjct: 352 SYRDLPMRLGETSTLFRKEDSGEMHGLIRVRQFTISEGHLIIRPEQLEDEF--------- 402

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFDD 241
               +  L       E+  +  D+S+ F           +  + +  +    +     DD
Sbjct: 403 ----KGCLALAKYCLETIGLAEDVSYRFSQWDPANPNNKYEGTAEQWEEAQGAMKKILDD 458

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           I     I     A Y    D+  + +F    +   +    I++        + +      
Sbjct: 459 IGLDYEIGIDEAAFYGPKLDIQIKNVF---GKEDTLITIQIDM--------QIAKKFGME 507

Query: 302 FKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DGK      +    +G      A++   + G   +W        + +         
Sbjct: 508 YVDKDGKMKMPYIIHRTSVGCYERTLALLIEKYAGVLPLWLAPEQVRILPIKP------E 561

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++   +  +G  V  D   + IG +   A     P   I+G   V D  V ++ 
Sbjct: 562 HNDYAYELAEEMRDLGMRVEVDGEDDNIGPKIKQARFDRVPYMFIIGDNEVKDRTVTVRS 621

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G    M + + I          
Sbjct: 622 RKEGELPAMPVADAIAKLKEEIDTK 646


>gi|259503119|ref|ZP_05746021.1| proline-tRNA ligase [Lactobacillus antri DSM 16041]
 gi|259168985|gb|EEW53480.1| proline-tRNA ligase [Lactobacillus antri DSM 16041]
          Length = 578

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 109/263 (41%), Positives = 151/263 (57%), Gaps = 2/263 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +ENP DAE  SH +M R G I+Q S G++++LPL  + +  V  II+EE
Sbjct: 1   MKQSKLLIPTKKENPSDAEALSHIMMERAGYIYQISAGVWAYLPLAYRVIRKVKGIIQEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA EM  P++  ADLW ++GRY++YG  + +  D ND+  I GPT EE MT+I R 
Sbjct: 61  MEKAGAYEMETPSMLPADLWRQTGRYEAYGDTLYKFKDHNDREYILGPTDEEAMTEILRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQI  KFR+E RPR+GV+R +EF M DAYSF    EG   +Y     +
Sbjct: 121 SVKSYKKLPLVVYQITDKFRNEPRPRYGVLRGKEFSMLDAYSFAADEEGLDEAYQAQAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG IGGD S EF   A+ GE  +  +       +      FD
Sbjct: 181 YHNIFDRAGLHYKVILADSGTIGGDNSQEFSAPAEIGEDVIVYTDGGYAANLEKATAKFD 240

Query: 241 DI--ISLNSIVEQWTAPYAATSD 261
            +   +    +E+   P A T D
Sbjct: 241 AVQQTAEPGKLEKKATPGAHTVD 263



 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 65/179 (36%), Positives = 99/179 (55%), Gaps = 2/179 (1%)

Query: 261 DVHNEKLFDSLPEN-KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           D  N +  +  P+        GIE+GHIF  GT YS  + A     +G+   + MG YGI
Sbjct: 387 DFRNVQEGEIAPDGYPIKFTNGIEIGHIFKLGTGYSKKLGAQVLDKNGRLVDMIMGCYGI 446

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R+++AV E + D  G++WPDS+APF + +I + A          ++  +L+  G +V
Sbjct: 447 GVTRMLSAVAEQNADENGLVWPDSIAPFDVHVIPVNAKKDEQMAMANELEQQLTAAGYEV 506

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             DD  E+ G +FA +DL+G PL+V VG K  +D  VE+K R TG   ++  EE++N  
Sbjct: 507 LVDDRKERAGVKFADSDLIGIPLRVTVGKK-AADGIVEVKIRKTGETLEVKQEELVNTV 564


>gi|253580110|ref|ZP_04857377.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848629|gb|EES76592.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 653

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 66/448 (14%), Positives = 152/448 (33%), Gaps = 37/448 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD      ++ + T  +    +G+   +P G   +  +   I +E+ 
Sbjct: 226 LKEHLEQMEEAKKRDHNKLGREMKIFTT-VDVIGQGLPLIMPNGVIMMQELQRWIEDEET 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRS 120
           + G I    P +  +DL+  SG +D Y + M      + + +     P        ++++
Sbjct: 285 KRGYIRTKTPLMAKSDLYKISGHWDHYKEGMFVLGDEETDKEVFALRPMTCPFQYYVYKA 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  + +    FR+E      G+ R R+F + + +      +  K  +     
Sbjct: 345 EQHSYRDLPLRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLIVRPDQMVKE-FKDCIA 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTD 238
                   LG++                   +   D    + +     +     +     
Sbjct: 404 LAQYCLQVLGVEEDVTY-------------HLSKWDPNNREKYIGDAEVWNQTEAHIRQM 450

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +++    +      A Y    D++ + ++    +   +     +      F        
Sbjct: 451 LEELNIPFTEDVGEAAFYGPKVDINAKNVY---GKEDTMITIQWDALLAEQFD------- 500

Query: 299 SATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   +G+     +     +G      A +    +    ++P  + P ++ +I I   
Sbjct: 501 -MYYIDENGEKQRPYIIHRTSMGCYERTLAWLI---EKYAGMFPTWLCPEQVRVIPI--- 553

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   +   K+ A+L + G     D   E++G +   A L   P  +IVG+K   + KV 
Sbjct: 554 SEKFHNYAAKVEAQLKENGIRCSVDQRSEKMGYKIREARLARVPYMLIVGAKEEEEGKVS 613

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R  G      L + +        N 
Sbjct: 614 VRSRYLGDEGMKDLGDFLAAIKEEIKNK 641


>gi|225021291|ref|ZP_03710483.1| hypothetical protein CORMATOL_01310 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946024|gb|EEG27233.1| hypothetical protein CORMATOL_01310 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 700

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 59/458 (12%), Positives = 124/458 (27%), Gaps = 51/458 (11%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L +    +   G   + P G      +    R    
Sbjct: 265 LAEYQHKMAEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPNGGIVRLEMEEHSRRRHI 323

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTH 110
             G   ++ P L   +L+ +SG  D Y   M      + +                 P +
Sbjct: 324 AAGYSFVNTPHLTKGELFEKSGHLDFYADGMFPPMKLDGEVDADGNVTKPAVDYYVKPMN 383

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
             +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T + 
Sbjct: 384 CPMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIYC-TEDQ 442

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
            +     +    + +    GL    +   +                    +   S +  +
Sbjct: 443 LEAELTSVLDFVISLLRDYGLDDFYLELST----------------KDPEKFVGSDEIWE 486

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                     D             A Y       + +  D++    ++S   ++    F 
Sbjct: 487 KSTAILQRVADKSGLDLVPDPGGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FN 539

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              ++       +   DG      M    +     R    ++E                 
Sbjct: 540 LPDRF----HLEYTAPDGTKKQPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPQQVMG 595

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
                    H +            L   G     D   +++  +         P  ++ G
Sbjct: 596 IPVADTFVPHLESVI-------NELQARGVRASVDTSDDRMQKKIRTYTQAKVPFMLLAG 648

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ V    V  +         + + + I+       + 
Sbjct: 649 ARDVEAQAVSFRFLDGSQLNGVPVAQAISLIDEWVRSR 686


>gi|157127485|ref|XP_001655003.1| prolyl-tRNA synthetase [Aedes aegypti]
 gi|108872928|gb|EAT37153.1| prolyl-tRNA synthetase [Aedes aegypti]
          Length = 435

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 142/454 (31%), Positives = 222/454 (48%), Gaps = 43/454 (9%)

Query: 2   RRSKYFLPIL---QEN---PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNA 55
           + SK F P L   +      +D    S +LML  G++ Q   G +  LPL Q+++     
Sbjct: 3   KLSKIFQPSLIIPKNAIVKNQDITSKSQRLMLEQGLMRQAGNGTFYILPLLQRSVQKAID 62

Query: 56  IIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
           ++        GA ++++P L SADLW +SGR ++ G E++   DR+ K  I GPTHEE +
Sbjct: 63  LVDHHMQHFAGAEKLTLPILTSADLWRKSGRLETAGGELMSTTDRHGKRQILGPTHEESI 122

Query: 115 T-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T  +      SYR  P   YQI  KFRDE++PRFG+MR++EFLMKD Y+FD+    ++ +
Sbjct: 123 TALLAAISPVSYRQFPLRLYQISTKFRDEMKPRFGLMRAKEFLMKDLYTFDVGLAEARQT 182

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y  +  +Y R+F  +G+  + +R ++G +GG  SHE+   ++ GE Q+ C          
Sbjct: 183 YEVVNEAYRRLFEAVGVPFVKVRGDTGVMGGSTSHEYHFPSEVGEDQLVCCSVC------ 236

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                      +    E +            EK  +    +      GIEVGH F    K
Sbjct: 237 ----------GMGCNQEMFDG----------EKACERCNNSNIGRQAGIEVGHAFILEDK 276

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS  + A F   +GK   +QMG YGIG  R++AA +E     K I WP ++APFK+ LI 
Sbjct: 277 YSKALGAMFLNQNGKPEALQMGCYGIGITRLIAAGVEVLSSEKEIRWPRALAPFKVCLIP 336

Query: 354 IKA--HDQVCRD----ACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIV 406
            K    ++   +      E   ++LS VG +V  DD     IG +   A   G+P+ V++
Sbjct: 337 PKKGSKEESLVEPWLHRLEDEVSKLSSVGSEVVVDDRTSLTIGKRLLDAKKTGYPVVVVI 396

Query: 407 GSKFVSDSK--VEIKHRLTGIREDMSLEEVINYA 438
           G K   +     E+ ++    ++ +   E +   
Sbjct: 397 GPKAADEGAELFEVHNQTDETQKLLGFSETVKEI 430


>gi|209526622|ref|ZP_03275147.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209492990|gb|EDZ93320.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 604

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 61/436 (13%), Positives = 136/436 (31%), Gaps = 33/436 (7%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L      Q   G+  W P G      +   ++ EQ R G   + 
Sbjct: 196 EEALRRDHRRLGKELGLFI-FSDQVGPGLPLWTPKGTILRTTLEDFLKREQVRRGYQPVV 254

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLP 129
            P L   +L+  SG +  Y +++  +   ++    +    +      I++S ++SYR LP
Sbjct: 255 TPHLGRVNLFKTSGHWQKYREDLFPMMGESEDEGFVLKAMNCPFHVQIYKSSLRSYRELP 314

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
               +    +R E     G +       +D     +TPE     + K+      +  +L 
Sbjct: 315 IRLAEFGTVYRYEQSGELGGLTRVRGFTQDDAHLFVTPEQLDDEFLKVVDLIQSVLKKL- 373

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                 + +            +   D    +   S    +    +     + +       
Sbjct: 374 ------KLDQSFKAR------LSFRDPNSDKYIGSDQAWEKAENAIRRAVETLGMNYFEG 421

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D     + D+L    ++    ++                  +   DG  
Sbjct: 422 IGEAAFYGPKLDFI---VQDALEREWQLGTVQVDYNLP--------ERFDLEYVAEDGTR 470

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +     G++  +  ++   + G   +W          ++ +           E +
Sbjct: 471 QRPVMIHRAPFGSLERLIGILIEEYTGDFPLW------LAPVMVRLLPVSDEFFPFVESV 524

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +   +      D   +++G     A+    P+  +VG+K V  + + I+ R  G    
Sbjct: 525 AEKWRSLDIRAEADHSHDRLGKMIRNAEKAKVPVMAVVGAKEVESNSLSIRTRALGELGT 584

Query: 429 MSLEEVINYASHRFSN 444
           +++ E  +      +N
Sbjct: 585 LTVAETQSRLQFALAN 600


>gi|320590732|gb|EFX03175.1| threonyl-tRNA synthetase [Grosmannia clavigera kw1407]
          Length = 752

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 85/480 (17%), Positives = 161/480 (33%), Gaps = 64/480 (13%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S Y   + +   +D         L     H+ S G   +LP G +  + +   I  E +
Sbjct: 287 LSDYMKFLEEAAKKDHRRIGQDQELF--FFHKLSPGSPFFLPHGMRIFNALKEFILSEYH 344

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +   +E+  P + +ADLW  SG ++ Y ++M  L +   +     P +      IF S  
Sbjct: 345 KRDYVEVMSPNMFNADLWRTSGHWEHYQEDMFTL-EVEKQQWALKPMNCPGHCVIFGSRE 403

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP    +  +  R+E      G+ R R F+  D++ F    +        +F   
Sbjct: 404 RSYRELPLRMAEFGILHRNEASGALSGLTRVRRFIQDDSHIFCEEDQIGSE-IRDLFDFL 462

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++ +LG+K   ++  + P     + E    A+                  +      +
Sbjct: 463 RTVYGKLGMKF-RLKLSTRPEKYLGNLETWDKAEATLQH-------------ALEEFTKE 508

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG---------- 291
             +  S+     A Y    D+   ++ D+L    + +   ++      F           
Sbjct: 509 SGAEWSLNPGDGAFYGPKIDI---QIMDALRRWHQCATLQLDFQLPQQFNLSYMTAASSN 565

Query: 292 --------TKYSLPMSATFKG----------------ADGKDHYVQMGSYGIGAMRVVAA 327
                   T  + P+ A  K                 A G    V +    +G+     A
Sbjct: 566 SDGKAEAKTVETKPVEAETKDGKDDSKAVTASAAQTLAPGYSRPVMIHRAVLGSFERFIA 625

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
            +     GK   W        + ++          D   ++   L   G  V  D     
Sbjct: 626 TLSEHFAGKWPFWLSPRQILLVPVM------ADAEDYVREVQKVLKARGFYVDSDLGANT 679

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMSLEEVINYASHRFSNNR 446
           +  +     +L +    ++GSK + D  V I+ R + G    +SL+ V+   S R    +
Sbjct: 680 MNKKIRNGQVLQYNFIFVLGSKEMQDRSVSIRVRDSKGDLTTLSLDVVVERLS-RLRETK 738


>gi|242791014|ref|XP_002481676.1| threonyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218718264|gb|EED17684.1| threonyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 724

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 73/461 (15%), Positives = 141/461 (30%), Gaps = 54/461 (11%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   R+ +    +  L        S G    LP G K  + +  ++R E  + G 
Sbjct: 291 LKFLEEAEKRNHQKIGKEQELF--FFDDVSPGCPFLLPHGTKIFNALQKLLRAEYRKRGY 348

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    +W  SG +  Y  +M +L D   +     P +      +F    +SYR
Sbjct: 349 QEVQTPNMYDVGIWKTSGHWAHYSDDMFKL-DVEKREWALKPMNCPGHFMLFGHRERSYR 407

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP       +  R+E      G+ R R+F   D++ F  + + +      +F     ++
Sbjct: 408 ELPLRIADFGVLHRNEASGALHGLTRVRKFQQDDSHIFCTSEQITSE-IEGIFDFLKSVY 466

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G     ++  + P       E                   ++         ++    
Sbjct: 467 GLFGFTF-KLKLSTRPEKYMGELE-----------------AWNYAEEQLRQALNNFKGD 508

Query: 246 NSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---------- 294
           +  + E   A Y    D+    + D+L  + + +   ++      F  +Y          
Sbjct: 509 DWEINEGDGAFYGPKIDI---TISDALKRDFQCATIQLDYQAPINFKLEYITNEKQAGSD 565

Query: 295 -----SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
                     A    A+     V   +      R +  +IE                   
Sbjct: 566 AKANKDDTEKAKESNANRARPVVIHRAIIGSFERFLGILIEHFAGKWPFWLSPRQILIVP 625

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +  +        D  +++   L     +V  D  G  +  +     L  +    +VG++
Sbjct: 626 VMPALN-------DYAKELQENLLADKFNVDVDVSGNTLQKKIRTGQLAQYNFIFVVGAQ 678

Query: 410 FVSDSKVEIKHRLTGIR----EDMSLEEVINYASHRFSNNR 446
                 V I++R         E +SLEE            R
Sbjct: 679 EKESRSVNIRNRDDPSSHAKGELISLEEARVKLKALRKERR 719


>gi|328779973|ref|XP_001122171.2| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Apis mellifera]
          Length = 428

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 114/418 (27%), Positives = 200/418 (47%), Gaps = 46/418 (11%)

Query: 2   RRSKYFLP------ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNA 55
           + S+ F P        ++   +    S++ +L+ G+I Q + G+Y+ LPLG +  + + A
Sbjct: 11  KLSQLFQPVTATIATTKQT--EIRSKSYENLLKYGLIKQVTTGMYAILPLGLRIFNKLTA 68

Query: 56  IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
           ++  E  + GA ++ +P L    LW ++ R ++   E+ ++ DR  +  I  PTHEE + 
Sbjct: 69  LVDNEMQKIGAQKLLLPALTPTHLWKKTDRLNNV-TELFKIQDRAQRQYILSPTHEESIC 127

Query: 116 DIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
            +  +  I S + LP   YQI  K+RDE++PRFG +RSREF+MKD Y+FD+    ++ +Y
Sbjct: 128 SVMSTIGILSPKMLPLKLYQISNKWRDEIKPRFGFLRSREFMMKDLYTFDINLNNAQETY 187

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
             +  +Y  IF ++G+  I    + G IG  +SHE+  ++D GE  + C      + I  
Sbjct: 188 ALVCNAYENIFKKIGITYIKSIGDPGLIGDSISHEYHYISDIGE-DIVCICPSCQYSIN- 245

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGT 292
             T   +                              P+ K         EVGH F   T
Sbjct: 246 -KTICKES---------------------------YCPKCKNAFNEKSAAEVGHTFLLNT 277

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KY++P+    K  + +   + MG +G+G  R+   + E     + + WP ++AP+ + LI
Sbjct: 278 KYTIPLEVKIK-INNESIPLVMGCFGLGLSRIFTVMTELLSTKEELRWPKNLAPYTVCLI 336

Query: 353 NIKA--HDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVG 407
             KA   ++      +++   L+++  D   DD     IG +F  A + GFP  +I+ 
Sbjct: 337 PPKAGSKEENKSQYVKEVMEILNQLNIDTILDDRTNLTIGKRFMHARITGFPYVIIID 394


>gi|289620774|emb|CBI52508.1| unnamed protein product [Sordaria macrospora]
          Length = 792

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 79/478 (16%), Positives = 152/478 (31%), Gaps = 69/478 (14%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD  +   +  L      + S G   WLP G +  + +   I+EE  + G  E+
Sbjct: 314 LEEAAKRDHRLIGKQQELF--YFEECSPGSAMWLPHGMRINNAIMEYIKEEYWKRGYDEV 371

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + +  LW +SG    Y  +M  L D + +     P +      +FR   +S++ LP
Sbjct: 372 MTPNMFNTSLWEQSGHLAHYKDDMFIL-DVDKEQFGLKPMNCPAHAMMFRHRDRSHKELP 430

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                  +  R+E      G+ R R F   DA+ F    +  K     +F      +  L
Sbjct: 431 LRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCR-EDQIKAEVADLFDFMKSFYGML 489

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           GL    ++  + P       E    A+    +             + N           +
Sbjct: 490 GLTFK-LKLSTRPEKYMGEIETWDRAEARLKE-------------ALNEFTASTGGTWEL 535

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA--- 305
            E   A Y    D+    + D L    + +   ++      F  +Y    +   +     
Sbjct: 536 NEGDGAFYGPKIDI---AVLDCLNRPWQCATIQLDFQQPINFSLEYMTAETQAKQDESKL 592

Query: 306 ----------------------------------DGKDHYVQMGSYGIGAMRVVAAVIES 331
                                              G    V +     G++    A++  
Sbjct: 593 APKAPEPEAPKEEEAPKEGEDKKKKPLLVKKPLAPGCARPVMIHRAMAGSIERFTAILA- 651

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             +     WP  ++P ++ +I +        D  +++   L K    V  D  G  +  +
Sbjct: 652 --EHFAGKWPFWMSPRQVMVIPVGMG---FLDYAKEVALTLKKEKIHVDVDSSGNTLQKK 706

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNN 445
              A L  +    +VG    ++ KV I++R     +       L E ++      ++ 
Sbjct: 707 IRSAQLAQYNFIFVVGDDEKTNRKVNIRYRDDTSTQARDVPYPLSEAVDKLRALKADR 764


>gi|305681479|ref|ZP_07404286.1| threonine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
 gi|305659684|gb|EFM49184.1| threonine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
          Length = 687

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 62/457 (13%), Positives = 131/457 (28%), Gaps = 49/457 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      +L L +    +   G   + P G      +    R    
Sbjct: 252 LAEYQHKMAEAEKRDHRRLGQELDLFS-FPDEIGSGFPVFHPNGGIVRLEMEEHSRRRHI 310

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------AMIYGPTH 110
             G   ++ P L   +L+ +SG  D Y   M      + +                 P +
Sbjct: 311 AAGYSFVNTPHLTKGELFEKSGHLDFYADGMFPPMKLDGEVDADGNVTKPAVDYYTKPMN 370

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
             +   IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T + 
Sbjct: 371 CPMHNLIFASRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIYC-TEDQ 429

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
            +     +    + +    GL    +   +                    +   S +  +
Sbjct: 430 LEAELTSVLDFVISLLRDYGLDDFYLELST----------------KDPEKFVGSDEIWE 473

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                     D             A Y       + +  D++    ++S   ++    F 
Sbjct: 474 KSTAILQRVADKSGLDLVPDPGGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FN 526

Query: 290 FGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
              ++       +   DG K   + +     G++     V+   + G    W        
Sbjct: 527 LPDRF----HLEYTAPDGTKKQPIMIHRALFGSIERFFGVLLEHYAGAFPAWLAPQQVMG 582

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           I +              E +   L   G     D   +++  +         P  ++ G+
Sbjct: 583 IPVA------DTFIPHLESVINELQARGVRASVDTSDDRMQKKIRTYTQAKVPFMLLAGA 636

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + V    V  +         + + + I+       + 
Sbjct: 637 RDVEAQAVSFRFLDGSQLNGVPVAQAISLIDEWVRSR 673


>gi|153812461|ref|ZP_01965129.1| hypothetical protein RUMOBE_02860 [Ruminococcus obeum ATCC 29174]
 gi|149831386|gb|EDM86474.1| hypothetical protein RUMOBE_02860 [Ruminococcus obeum ATCC 29174]
          Length = 657

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 65/448 (14%), Positives = 151/448 (33%), Gaps = 37/448 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD      ++ + T  +    +G+   +P G   +  +   I +E+ 
Sbjct: 226 LKEHLEQMEEAKKRDHNKLGREMKIFTT-VDVIGQGLPLIMPNGVIMMQELQRWIEDEET 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRS 120
           + G +    P +  +DL+  SG +D Y   M      + + +     P        ++++
Sbjct: 285 KRGYVRTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEETDKEVFALRPMTCPFQYYVYKA 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  + +    FR+E      G+ R R+F + + +      +  K  +     
Sbjct: 345 EQHSYRDLPLRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLIVRPDQMVKE-FKDCIA 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTD 238
                   LG++                   +   D    + +  +  +      +    
Sbjct: 404 LAQYCLQVLGVEEDVTY-------------HLSKWDPNNREKYIGEPEVWNETEEDIRQM 450

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +++    +      A Y    D++ + ++    +   +     +      F        
Sbjct: 451 LEELNIPFTEDVGEAAFYGPKVDINAKNVY---GKEDTMITIQWDALLAEQFD------- 500

Query: 299 SATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   +G      +     +G      A +    +    ++P  + P ++ +I I   
Sbjct: 501 -MYYIDENGDKKRPCIIHRTSMGCYERTLAWLI---EKYAGMFPTWLCPEQVRVIPI--- 553

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +      +K+ A++ + G     D   E++G +   A L   P  ++VG+K   + KV 
Sbjct: 554 SEKFNAYADKVEAQMKEAGIRCSVDRRSEKMGYKIREARLERVPYMLVVGAKEEEEGKVS 613

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R  G      L E I        N 
Sbjct: 614 VRSRYLGDEGMKDLGEFIAAIKEEIKNK 641


>gi|154300294|ref|XP_001550563.1| hypothetical protein BC1G_11336 [Botryotinia fuckeliana B05.10]
 gi|150856659|gb|EDN31851.1| hypothetical protein BC1G_11336 [Botryotinia fuckeliana B05.10]
          Length = 787

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 79/474 (16%), Positives = 150/474 (31%), Gaps = 63/474 (13%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD         L     H+ S G   WLP G +  + + + +RE+    G  E+
Sbjct: 320 LEEAAKRDHRKLGKDQELF--FFHEMSPGSAMWLPHGARIYNTIMSFLREQYWTRGYEEV 377

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + +++LW  SG +  Y  +M       D      P +      +F    +S+R LP
Sbjct: 378 ITPNMYNSELWKTSGHWAYYKDDMFTFPVEKDT-FALKPMNCPGHCLMFGHRERSHRELP 436

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           +      +  R+E      G+ R R F   DA+ F    +        +F     I+  L
Sbjct: 437 WRVADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCREDQIKDE-ITGLFDFLKAIYGLL 495

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G         + P       E   +A+                   +     D      +
Sbjct: 496 GFTFKLN-LSTRPEKYLGKLETWDMAEEKLRSAL------------DEFAATDGGVPWVL 542

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA--- 305
            E   A Y    D+    + D L    + +   ++      FG +Y+     T K     
Sbjct: 543 NEGDGAFYGPKIDI---TICDVLKREWQCATIQLDFQLPQNFGLEYNTGDVPTKKDEEAV 599

Query: 306 -----------------------------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                                         G    V +     G++    A++    +  
Sbjct: 600 KEPVVKPKKTTEPEDPNAPPKERVYKPLTPGCARPVMIHRAMAGSIERFTAILI---EHF 656

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
              WP  ++P +I +I +        +  +++ +   K    +  D  G  +  +     
Sbjct: 657 AGKWPFWLSPRQILVIPVGVG---YFEYAKEVQSIFHKQQMFIDVDLSGNTLQKKIRTGQ 713

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
           L  +    +VG   +   +V +++R     +D    +SL+E I   +      R
Sbjct: 714 LAQYNFIFVVGDTEMKGREVNVRNRDDTSSQDRGKPVSLQEAIEKLTALRDERR 767


>gi|284929738|ref|YP_003422260.1| prolyl-tRNA synthetase, family II [cyanobacterium UCYN-A]
 gi|284810182|gb|ADB95879.1| prolyl-tRNA synthetase, family II [cyanobacterium UCYN-A]
          Length = 606

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 112/240 (46%), Positives = 150/240 (62%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK     L+E+P +AEI SHKL+LR+  I + S GIYS+LPL  + L   + IIREE
Sbjct: 1   MQLSKVLFVTLREDPAEAEIISHKLLLRSCYIRRVSSGIYSYLPLMWRVLRKTSQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  G  E  +P LQ +DLW ESGR+ +Y +    M  L DR ++ +  GPTHEEV+T I
Sbjct: 61  MNSIGGQECLLPQLQISDLWEESGRWKTYTEAEGIMFSLIDRQNRELALGPTHEEVVTSI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R  + SY+ +P   YQIQ KFRDE+RPRFG+MRSREF+MKDAYSFD   E  + +Y+ +
Sbjct: 121 VRDMVVSYKQMPLNLYQIQTKFRDEIRPRFGLMRSREFIMKDAYSFDENLENLQKNYDMV 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  I  R GL    + A+SG IGG  S EF+VL D GE ++  ++D   +    E  
Sbjct: 181 SQAYCNILKRCGLSFKVVEADSGTIGGLASQEFMVLTDVGEDEILYTEDNS-YAANVEKA 239



 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 109/189 (57%), Gaps = 4/189 (2%)

Query: 261 DVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           DV   K  D + EN   + +S +G+EVGH+F  GTKYS  M ATF   +G++  + MG Y
Sbjct: 413 DVRRAKEGDKISENSQERLISKKGVEVGHVFQLGTKYSKKMKATFTDKNGEEKPIVMGCY 472

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+V + +E +HD  GIIWP ++AP+   +I     ++   +  EKIY  L+ +G 
Sbjct: 473 GIGVSRLVQSAVEQNHDKHGIIWPLAIAPYHAIIIVPNVKEKQQMEIAEKIYYDLNSIGI 532

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +   DD  E+IGS+F  A+L+G P Q++ G + +   KVE+  R T   +++ +EE+   
Sbjct: 533 ETILDDRTERIGSKFKDAELIGIPYQIVTG-RTLKFGKVEVVDRKTKNSQEVIIEELPKL 591

Query: 438 ASHRFSNNR 446
               F N +
Sbjct: 592 FHEFFKNIK 600


>gi|325479231|gb|EGC82327.1| proline--tRNA ligase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 572

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 113/283 (39%), Positives = 173/283 (61%), Gaps = 3/283 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SKY++P L+E+P DAE ASHK + R   I + + G+YS+LPLG+K ++ + AI+RE 
Sbjct: 1   MRLSKYYMPTLREDPVDAETASHKYLTRGAFIRKQASGVYSFLPLGKKVINKIEAIVRES 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                +IE+S   LQ+ ++W  SGR++++G EM +L DR+++    GPT EE  TD+ ++
Sbjct: 61  MENHDSIEVSTSILQAKEIWETSGRWETFGPEMFKLEDRHNRQYCLGPTAEEAFTDLIKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG+ RSR+FLMKDAYSFD + EG + SY KM+ +
Sbjct: 121 ELNSYKQLPLNIYQIVDKFRDEKRPRFGINRSRDFLMKDAYSFDASYEGLELSYQKMWDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y+  F ++GL+   +  +SG +GG  SHEFI L++TGE  +  +    D+    E   F 
Sbjct: 181 YVEAFDKMGLEYKIVEGDSGSMGGRKSHEFIALSETGEGVILYTDS-SDYAATDEKARFK 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                 +  E         + +  E++   L E+ +  A+ ++
Sbjct: 240 QEFVDEAEKELELVETVGKTTI--EEVSSYLSEDPKHFAKAVD 280



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 94/174 (54%), Gaps = 1/174 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 +ARGIEVG+IF  GTKYS  + A F   +GK     MGSYGIG  R V+A++E 
Sbjct: 396 GSGILKAARGIEVGNIFQLGTKYSESLEAYFLDENGKQQPFIMGSYGIGISRSVSAIVEQ 455

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            HD KGI+WP SVAPF+  +  I  + +  ++  E+IY +L +   DV  DD  E+ G +
Sbjct: 456 YHDDKGILWPTSVAPFEAIVTIINPNKEDQKELGEEIYNKLKEERIDVLLDDRKERAGVK 515

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           F   DL+G P ++ VG K  SD  VE   R     E ++++  I         +
Sbjct: 516 FNDRDLIGIPYRITVG-KDASDEIVEYSTRREMENEKITVDTAIEKIISSVKKD 568


>gi|315651290|ref|ZP_07904318.1| threonine--tRNA ligase [Eubacterium saburreum DSM 3986]
 gi|315486442|gb|EFU76796.1| threonine--tRNA ligase [Eubacterium saburreum DSM 3986]
          Length = 651

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 154/447 (34%), Gaps = 37/447 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE-EQN 62
           + +L  L++   RD      ++ L T  +    +G+   LP G K +  +   I + E N
Sbjct: 227 EAYLKHLEDIKLRDHNKLGREMELFTT-VDVVGQGLPLMLPKGTKMIQKLQRWIEDLEDN 285

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTDIFRS 120
             G +    P +  +DL+  SG +D Y   M  L D   + + +   P        ++++
Sbjct: 286 EWGYVRTKTPLMAKSDLYKISGHWDHYQDGMFILGDPQHDGEILALRPMTCPFQYYVYKN 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             KSYR+LP+   +    FR+E      G+ R R+F + + ++     +  +   N + +
Sbjct: 346 TQKSYRDLPYRMGETSTLFRNEDSGEMHGLTRVRQFTISEGHNVIRPDQAEEELQNCLNL 405

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +                 E+  +  D++          + +    + + +    +     
Sbjct: 406 AI-------------YVLETLGLRDDVTFRLSKWDKNNKEKYLGDEAYWEGTQAALRNIL 452

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +     +  +   A Y    D+  + ++      K  +   I            +    
Sbjct: 453 VEKGLPFTEADGEAAFYGPKIDIQAKNVY-----GKEDTMITI------QLDAAIAENFD 501

Query: 300 ATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +   +G       +    +G      A +    +     +P  + P ++ ++ I    
Sbjct: 502 LYYIDQNGAKVRPYIVHRTSLGCYERTLAWLI---EKYAGKFPTWLCPEQVRILPISDK- 557

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D    +   L K G D   D   E+IG +   A L   P  ++VG K  ++  V +
Sbjct: 558 --YADYANSVLKELKKNGVDATVDTRTEKIGFKIRDARLSRLPYMLVVGEKEEAEGSVSV 615

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G      L + ++         
Sbjct: 616 RSRFAGDEGSKKLSDFVDMICKEIRTK 642


>gi|108799209|ref|YP_639406.1| threonyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119868325|ref|YP_938277.1| threonyl-tRNA synthetase [Mycobacterium sp. KMS]
 gi|126434867|ref|YP_001070558.1| threonyl-tRNA synthetase [Mycobacterium sp. JLS]
 gi|122977050|sp|Q1B9T4|SYT_MYCSS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225465|sp|A3PYU0|SYT_MYCSJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225466|sp|A1UF79|SYT_MYCSK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|108769628|gb|ABG08350.1| Ser-tRNA(Thr) hydrolase [Mycobacterium sp. MCS]
 gi|119694414|gb|ABL91487.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Mycobacterium
           sp. KMS]
 gi|126234667|gb|ABN98067.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Mycobacterium
           sp. JLS]
          Length = 684

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/451 (14%), Positives = 129/451 (28%), Gaps = 49/451 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +  + G   +
Sbjct: 254 IEEAQRRDHRKLGVELDLFS-FPDELGSGLPVFHPKGGIVRKELEDYSRAKHLQAGYEFV 312

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDI 117
           + P +    L+V SG  + Y   M                 +  +     P +  +   I
Sbjct: 313 NTPHITKEQLYVTSGHLEWYADGMFPAMHIDAEYDADGAVRKPGQNYYLKPMNCPMHHLI 372

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +RS  +SYR LP   ++    +R E      G+ R R     DA+ +    +        
Sbjct: 373 YRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYATREQMRDEL-TS 431

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +    GL    +   +                    +   S +  D    +  
Sbjct: 432 LLQFVLDLLSDYGLDEYYLELST----------------KDPDKYVGSDEIWDEATETLR 475

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              +             A Y       + ++ D+L  N ++S   ++             
Sbjct: 476 EVAEASGLDLVPDPGGAAFYGPKI---SVQVKDALGRNWQMSTIQLDFNMP--------E 524

Query: 297 PMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +  ADG       +     G++     V+   + G    W   V    I +    
Sbjct: 525 RFELEYTAADGSRQRPVLIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPVA--- 581

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     E + A+L   G  V  D   +++  +         P  ++ G K V+   
Sbjct: 582 ---DAHIPYLEDVAAQLRSRGVRVEIDGSDDRMAKKIVNHTNQRVPFMLLAGDKDVAAGA 638

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           V  +         +  +E +          R
Sbjct: 639 VSFRFGDRTQINGVPRDEAVEAIVGWIVERR 669


>gi|291550699|emb|CBL26961.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Ruminococcus
           torques L2-14]
          Length = 650

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 70/448 (15%), Positives = 150/448 (33%), Gaps = 37/448 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD      ++ L T  +    +G+   +P G   +  +   I +E+ 
Sbjct: 226 LKEHLTQLEEAKKRDHNKLGREMKLFTT-VDVIGQGLPLIMPNGVIIMQELQRWIEDEEA 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRS 120
           + G I    P +  +DL+  SG +D Y + M      +++ +     P        ++++
Sbjct: 285 KRGYIRTKTPLMAKSDLYKISGHWDHYKEGMFVLGDEEKDKEVFALRPMTCPFQYYVYKA 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  + +    FR+E      G+ R R+F + + +      +  K  +     
Sbjct: 345 EQHSYRDLPLRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLVVRPDQMVKE-FKDCIA 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTD 238
                   LG++                   +   D  +T+ +     +         T 
Sbjct: 404 LAQYCLQVLGVEEDVTY-------------HLSKWDPTDTKKYIGAPEVWEETEGHIRTM 450

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             ++           A Y    D++ + ++    +   +     +      F        
Sbjct: 451 LQELNIPFVEDVGEAAFYGPKVDINAKNVY---GKEDTMITIQWDALLAEQFD------- 500

Query: 299 SATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   +G      +     +G      A +    +    ++P  + P ++ +I I   
Sbjct: 501 -MYYIDENGDKQRPYIIHRTSVGCYERTLAWLI---EKYAGMFPTWLCPEQVRVIPISDK 556

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D   K+ A+L +       D   E++G +   A L   P  +IVG+K   + KV 
Sbjct: 557 ---YNDYAAKVEAQLKEANIRCSVDGRSEKMGYKIREARLNRVPYLLIVGAKEEEEQKVS 613

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R  G      L E I       +  
Sbjct: 614 VRSRYLGDEGSKDLGEFIEAIKDEIAKK 641


>gi|149173541|ref|ZP_01852171.1| threonyl-tRNA synthetase [Planctomyces maris DSM 8797]
 gi|148847723|gb|EDL62056.1| threonyl-tRNA synthetase [Planctomyces maris DSM 8797]
          Length = 726

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 78/507 (15%), Positives = 149/507 (29%), Gaps = 99/507 (19%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIRE 59
           M+  +Y   + +   RD  +   KL L +  I+ +  +G+  WLP G      +   I+ 
Sbjct: 234 MK--QYLEQVEEAKRRDHRVLGKKLGLFS--INPEVGQGLCLWLPKGATIRAVLEDFIKV 289

Query: 60  EQNRTGAIEMSVPTL--------------------------------------------- 74
           E  R G   +  P +                                             
Sbjct: 290 ELTRLGYQPVYSPHIGRVELYETSGHFPYYRDSQFAPLFGHDAGQLVDFWVRKLEEDSLS 349

Query: 75  -QSADLWVESGRYDSYGKEML------------RLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +  +L+ +S R  +   E              +  +   +  +  P +     ++++S 
Sbjct: 350 AEDEELFFKSSRVMNCDFEFPPGASREEKLKILKAWEHKHERYLLKPMNCPHHAEMYKSM 409

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR+LP    +    +R E      G++R R     DA+ F  TPE  +  +      
Sbjct: 410 PRSYRDLPVRLAEFGTVYRHEQTGELNGMLRVRGLTQDDAHIFC-TPEQVEEEFRATLEL 468

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +   +GL +  ++                  + G  +   S++       S     +
Sbjct: 469 VKFVLASVGLDNFRVQLSLR--------------EPGSDKYVGSEENWQHAENSLRKVLE 514

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 S  E   A Y   +D     + D +    ++    ++                 
Sbjct: 515 ASGMSYSECEGEAAFYGPKADFM---VSDCIGREWQLGTVQLDYNLP--------ERFKL 563

Query: 301 TFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            + G+D + H   M          R    +IE       +                    
Sbjct: 564 EYTGSDNQPHRPVMIHRAPFGSMERFTGMLIEHFAGAFPLWLAPEQIRVLPV-------S 616

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   ++ A+L K G  V  D    ++ ++   A L   P   IVG K    + V +
Sbjct: 617 DKTLDYANEVVAQLRKNGFRVSIDTRSSKVNAKIRDAQLELIPYMFIVGPKEAEQTAVAV 676

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R+ G    M L + I          
Sbjct: 677 RDRIDGDLGPMPLADAIAKLKQEADER 703


>gi|225574947|ref|ZP_03783557.1| hypothetical protein RUMHYD_03026 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037794|gb|EEG48040.1| hypothetical protein RUMHYD_03026 [Blautia hydrogenotrophica DSM
           10507]
          Length = 667

 Score =  203 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 68/445 (15%), Positives = 151/445 (33%), Gaps = 36/445 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE-EQNRT 64
           Y   + +   RD      ++ L T  +    +G+   +P G   L  +   I + E N  
Sbjct: 245 YLEQLEEAKKRDHNKLGREMELFTT-VDVIGQGLPLLMPKGVIILKELQRWIEDLEDNEW 303

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G I    P +  +DL+  SG +D Y   M      +++ +     P        ++++  
Sbjct: 304 GYIRTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDKEVYALRPMTCPFQYYVYKASQ 363

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP  + +    FR+E      G+ R R+F + +A+      +  +          
Sbjct: 364 HSYRELPLRYSETSTLFRNEDSGEMHGLTRVRQFTITEAHLITRPDQIDEEF-------- 415

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                +  ++       +  +  D+++           +      + +          ++
Sbjct: 416 -----KKCVQLAKFVLTTLGLQDDVTYRLSKWDPNNTEKYIGDAQYWETSQNKMRELLNE 470

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       +   A Y    D+  + ++      K  +   I            +      
Sbjct: 471 LELDFVEADGEAAFYGPKLDIQAKNVY-----GKEDTMITI------QLDFALAEQFHMY 519

Query: 302 FKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +G+      +    +G      A +    +    ++P  + P ++ ++ I    + 
Sbjct: 520 YIDENGEKKMPFIIHRTSMGCYERTLAWLI---EKYAGLFPTWLCPEQVRVLPI---SEK 573

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   ++ A+L   G     DD  E+IG +   + L   P  ++VG+K   + KV ++ 
Sbjct: 574 YLDYANQVNAQLKANGIRSSVDDRSEKIGYKIRESRLQKVPYMLVVGAKEEQEEKVSVRS 633

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G      L+  I++        
Sbjct: 634 RYLGDEGMKDLKSFIDHICEEIRTK 658


>gi|322379566|ref|ZP_08053903.1| prolyl-tRNA synthetase [Helicobacter suis HS1]
 gi|321147960|gb|EFX42523.1| prolyl-tRNA synthetase [Helicobacter suis HS1]
          Length = 576

 Score =  203 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 104/255 (40%), Positives = 146/255 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F P L+E P+DA + SH+ +++ G I Q   GIYS+LPLGQK L  +  II+EE
Sbjct: 1   MRYSTLFAPSLKEPPKDAVLKSHQFLIQAGFIKQIGSGIYSFLPLGQKVLSKIKNIIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E     +  A LW +S R   YG+E+L   DR +   + GPTHEEV  ++ + 
Sbjct: 61  MDKHGAQECMFNFITPASLWEQSKRLHKYGQELLVFKDRKNYPFVLGPTHEEVAVEVVKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQI  KFRDE+RPRFG+MR+REF+MKD YSF ++ +  +  +N M   
Sbjct: 121 FVQSYKQLPLHLYQIHTKFRDEIRPRFGLMRAREFIMKDGYSFHVSTQDLEREFNAMEQV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF RLGL    ++A+SG IGG+ S EF+VLA+ GE  +    +              
Sbjct: 181 YSRIFTRLGLNFRAVQADSGAIGGNKSKEFVVLAECGEDSIIACTNCSYAANIEIARRAR 240

Query: 241 DIISLNSIVEQWTAP 255
                N     +   
Sbjct: 241 RCEPDNVPKASFAKF 255



 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 4/226 (1%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--K 275
              +      ++    S     ++       V+  T       D+   ++ D  PE    
Sbjct: 353 PDALVIFDCDLEEA-NSLICGANEKEMHFVGVDLATFEGLNYQDIAAVRVQDLCPECQGN 411

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + IEVGHIF  G  Y+  + A F   +G+  + +MG YGIG  R++ A++E   D 
Sbjct: 412 LEQHKSIEVGHIFQLGNTYAKNLGANFLNTEGEATFFEMGCYGIGVSRLLPAILEQKSDS 471

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           KG +W    APF++ L+   + D       + +Y  L + G DV  DD   + G++    
Sbjct: 472 KGCVWSLESAPFEVVLVVANSKDTELIALAQTLYQELLEAGVDVLLDDRNLRFGAKMIDF 531

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           + +G    +I+G K      +E+  R    ++ +   ++I+    R
Sbjct: 532 ERIGSSYALIIG-KEAKSGHLELIKREGLSKQIVERVQLIDILKAR 576


>gi|193788250|dbj|BAG53144.1| unnamed protein product [Homo sapiens]
          Length = 619

 Score =  203 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 147/445 (33%), Gaps = 44/445 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 202 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 259

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 260 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 318

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 319 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 377

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 378 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 419

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 420 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 468

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 469 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 524

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K      +
Sbjct: 525 --TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTI 582

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R   +  + ++ E I      
Sbjct: 583 NIRTRDNKVHGERTISETIERLQQL 607


>gi|168070814|ref|XP_001786949.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660100|gb|EDQ48237.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 375

 Score =  203 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 138/394 (35%), Gaps = 40/394 (10%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD      +L L   M  + + G+  +LP G      +    RE Q + G 
Sbjct: 20  LHMLEEAKKRDHRKLGKELELF--MFSEEAPGMPFYLPKGMTVRTELEQFSRELQLQEGY 77

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +  LW +SG ++ Y   M   ++ +D      P +      IF++ + SYR
Sbjct: 78  QEVRTPLMMNNRLWEQSGHWEHYKDNM-YFSEVDDATFALKPMNCPGHMLIFKNTLHSYR 136

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP    +     R E      G+MR R F   DA+ + +  +          +S +   
Sbjct: 137 ELPIRMMEFGQVHRHEFSGALNGMMRVRTFCQDDAHLYVMPEQIEDE--INQAISLIGRM 194

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           + +      +   + P     S E    A+     V                  D     
Sbjct: 195 YDIFGFEYKIELSTRPEDSMGSEELWDQAERALQNVL-----------------DRRGVQ 237

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I E   A Y    D H   + D+L  + +     ++    F    K+      T+ G 
Sbjct: 238 YRINEGDGAFYGPKIDFH---ILDALKRSWQCGTIQLD----FQMPEKFD----LTYIGE 286

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           D   H   +    I     +   I    +     +P  +AP ++ L+ +  H     D  
Sbjct: 287 DSLKHRPVVIHRAI--YGSIDRFIGILTEHYAGAFPLWLAPVQVKLLPVSDH---YADYA 341

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            ++ ++L   G  V  D   E++G +   A +  
Sbjct: 342 LQVQSQLRAAGIRVETDLRSEKLGYKIREAQMEK 375


>gi|116513081|ref|YP_811988.1| prolyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
 gi|123025108|sp|Q02VZ7|SYP_LACLS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116108735|gb|ABJ73875.1| Prolyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
          Length = 616

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 109/282 (38%), Positives = 161/282 (57%), Gaps = 11/282 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L++R G + Q S GIY++LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLMRAGYVRQVSAGIYAYLPLANRVLEKLKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+  P+L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE MT + R 
Sbjct: 61  FDEIGAVELLAPSLLTADLWRESGRYETYGEDLYKLKNRDSSDFILGPTHEETMTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPR+G++R REFLMKD YS+    +    +Y     S
Sbjct: 121 EITSYKKLPLNVYQIATKFRDEKRPRYGLLRGREFLMKDGYSYHADQDSLDETYLDYKKS 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG---ETQVFCSKDFMD-------- 229
           Y +IF R GL   P+ A++G +GG  S EFI + D     E  +  SK+           
Sbjct: 181 YEKIFERAGLNFKPIIADAGAMGGKDSQEFIAITDDRINLEKWLVLSKNITSIDEIPESV 240

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                E      +   ++IV      YAA  ++   +   ++
Sbjct: 241 LSEIQEELGKWLVAGEDTIVYAEGGDYAANIEMATSQFEPNV 282



 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 14/188 (7%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           NE             ARGIE+GHIF  GT+Y+  M+A    A+G+   + MG YGIG  R
Sbjct: 425 NEGEISPDGRGTLKFARGIEIGHIFKLGTRYTEAMNANILDANGRSIPMLMGCYGIGVSR 484

Query: 324 VVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +++A++E                    I +P  +APF I L+ +   D+   +   ++  
Sbjct: 485 LLSAILEQFARIYVEKTPREEFKFSWSINFPKELAPFDIHLVPVNVKDEAAMELTSELEE 544

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G  V  DD  E+ G +FA +DL+G P++V +G K  ++  VE+K R TG   +++
Sbjct: 545 KLRGKGYQVLVDDRNERAGVKFADSDLIGLPVRVTIGKK-AAEGIVEVKIRATGEVVEIN 603

Query: 431 LEEVINYA 438
            +E++N  
Sbjct: 604 KDELVNTI 611


>gi|223938078|ref|ZP_03629976.1| threonyl-tRNA synthetase [bacterium Ellin514]
 gi|223893292|gb|EEF59755.1| threonyl-tRNA synthetase [bacterium Ellin514]
          Length = 618

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 70/452 (15%), Positives = 139/452 (30%), Gaps = 39/452 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           YF  + +   RD      ++ L          G+  WLP G   ++ +  + +E +   G
Sbjct: 194 YFTMLEEAKKRDHRKIGQEMGLFAIDTEYVGPGLPLWLPKGTMIVEELENLAKETEFAAG 253

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK---------AMIYGPTHEEVMTD 116
            + +  P L    ++  SG    Y + M    +  +K                +      
Sbjct: 254 YVRVKTPHLAKEKMYKTSGHLPYYAESMFPPMELKEKGGDSNEEAERYYLKAMNCPHHHR 313

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF +   SYR+LP    +    +R E     FG+MR R   M DA+ +    + +   +N
Sbjct: 314 IFAAEPHSYRDLPLRLAEYGTCYRYEQSGELFGLMRVRSLNMNDAHIYCTEEQFADE-FN 372

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +   YL+ F   GL+   MR  +                    +     +         
Sbjct: 373 AVNEMYLKYFKIFGLEKYQMRFSTHDPKRLG------------DKFVNEPELWKKTEDMV 420

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                        V    A Y    DV   +++ ++     ++   ++      FG    
Sbjct: 421 RNVLVKNNINFVEVPNEAAFYGPKIDV---QVWSAIGREFTIATNQVDFAVPAKFG---- 473

Query: 296 LPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                T++  D  +     +    +G        +   + G   +W        +++   
Sbjct: 474 ----LTYRDRDNTEKTPLCIHRAPLGTHERFIGFLIEHYAGNFPLWLAPDQVRVLTI--- 526

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              D+   +  + I   L         D   + I ++ A A+       +++G + +   
Sbjct: 527 -GDDEALVNYAKLIANELRANMVRCETDFRTDPIKAKIAEAEQTKVHTMLVIGPRDMEAG 585

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            V ++    G        EVI          R
Sbjct: 586 NVSVRLHGKGSLGAKPKGEVIADILASIKERR 617


>gi|154482657|ref|ZP_02025105.1| hypothetical protein EUBVEN_00330 [Eubacterium ventriosum ATCC
           27560]
 gi|149736433|gb|EDM52319.1| hypothetical protein EUBVEN_00330 [Eubacterium ventriosum ATCC
           27560]
          Length = 667

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 74/446 (16%), Positives = 158/446 (35%), Gaps = 39/446 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE-EQNRT 64
           +L  L++   RD      ++ L T  +    +G+   +P GQ+ +  +   I + E N  
Sbjct: 243 YLEELEDAKNRDHNKLGREMELFTT-VDVIGQGLPLLMPKGQRMIQKLQRWIEDLEDNEW 301

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G +    P +  +DL+  SG +D Y   M      +++ +     P        ++++  
Sbjct: 302 GYVRTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDKEVFALRPMTCPFQYYVYKASQ 361

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP  + +    FR+E      G+ R R+F + + +      +  +  +       
Sbjct: 362 KSYRDLPCRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLIVRPDQMVEE-FKNCIALA 420

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                 LGL+                   +   D    + +  +  +      +  +  +
Sbjct: 421 QYCLQTLGLEEDVTY-------------HLSKWDPENREKYIGEPEVWNETEQDIRNVLN 467

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +++  + +    A Y    D++ + ++    +   +     +      F          
Sbjct: 468 ELNIPFVEDIGEAAFYGPKVDINAKNVY---GKEDTMITIQWDALLAEQFD--------M 516

Query: 301 TFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   +G+      +    IG      A +    +     +P  + P ++ ++ I     
Sbjct: 517 YYIDENGEKKRPYIIHRTSIGCYERTLAWLI---EKYAGKFPTWLCPEQVRVLPISDK-- 571

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  +K+ A L K G DV  D   E+IG +   A L   P  ++VG +  +D  V ++
Sbjct: 572 -YVEYADKVAAELKKNGIDVTVDSRSEKIGYKIREARLDKLPYMLVVGQQEEADETVSVR 630

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R  G      L+E I          
Sbjct: 631 SRFAGDEGVKPLDEFIEQICKEIRTK 656


>gi|302820128|ref|XP_002991732.1| hypothetical protein SELMODRAFT_134156 [Selaginella moellendorffii]
 gi|300140413|gb|EFJ07136.1| hypothetical protein SELMODRAFT_134156 [Selaginella moellendorffii]
          Length = 647

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 66/412 (16%), Positives = 134/412 (32%), Gaps = 38/412 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y     +   RD  +      L     H+ S G   +LP G    + +   IR E  + G
Sbjct: 266 YMTKYEEAKKRDHRLLGKNQQLF--FFHELSPGSAFFLPKGTIVYNKLLQFIRSEYRKRG 323

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG    Y + M  + +   +     P +      +F+  ++SY
Sbjct: 324 FDEVVTPNIYNMKLWEQSGHAAHYKENMF-VFEIEKQEFGLKPMNCPGHCLLFQHRVRSY 382

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP       +  R+EL     G+ R R F   DA+ F +  +               +
Sbjct: 383 RELPLRIADFGVLHRNELSGALTGLTRVRRFSQDDAHIFCMESQVYDE-VKGCLDFLDYV 441

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++  + P                           D    +     +    
Sbjct: 442 YTIFGFTY-DLKLSTRPENF-----------------LGESALWDRAEGALADALNAHAK 483

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D+   ++ D+L    + +   ++    F    ++ L  SA    
Sbjct: 484 PWQMNEGDGAFYGPKIDI---QVSDALNRKFQCATIQLD----FQSPIRFKLSYSAE--D 534

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
               +  V +    +G++  + A++                        +    +  +D 
Sbjct: 535 EAKIERPVIIHRAILGSVERMFAILL------EDNVGKWPFWLSPRQAIVLTISEKFKDY 588

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            E++ A+L   G +V  D    ++  +   A +  +   ++VG+      +V
Sbjct: 589 AEEVRAKLHAAGFEVDVDVSDRKVDKKVREAQMAHYNYLLVVGAMEQEKGEV 640


>gi|322368472|ref|ZP_08043041.1| threonyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320552488|gb|EFW94133.1| threonyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 640

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 141/443 (31%), Gaps = 42/443 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +Y   + +   RD      +L L +  I +    G+  + P G+  L  ++    E    
Sbjct: 230 QYLERMEEAEERDHRKLGKELDLFS--IDETTGPGLPLYHPHGKTILRELSDYAGELNRG 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L   +LW +SG YD+Y  +M  L D ND+     P +      IF  H  
Sbjct: 288 AGYDEVETPHLFRTELWKKSGHYDNYVDDMF-LLDVNDEEYGLKPMNCPGHATIFDQHSW 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  +++    +R E R    G+ R   F + D + F    +  +    ++     
Sbjct: 347 SYRDLPIRYFENGKVYRKEQRGELSGLSRVWSFTIDDGHLFVRPDQIERE-IRQVMDLIF 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +     L      A                  T   +   S +  +       +  +  
Sbjct: 406 EVIETFDLDVEVALA------------------TRPEKSVGSDELWEHAEEQLRSVLEST 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I     A Y    D   E   D+L          ++    F    ++ L      
Sbjct: 448 GIDYDIEAGDGAFYGPKIDFGFE---DALGRVWDGPTVQLD----FNMPERFDLTY---V 497

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              + ++  V +     G+      V+    DGK  +W           + +        
Sbjct: 498 TEENEEERPVMIHRALYGSYERFFMVLIEHFDGKFPLW------LSPEQVRVLPVSDDNL 551

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++   L      V  +D    +G +   A     P  +IVG        + ++ RL
Sbjct: 552 GYAHRVANELDD--FRVEVEDRSWTVGRKIQQAHDDRVPYMIIVGGDEEEAGTISVRDRL 609

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
               +D+SLE    +        
Sbjct: 610 EREEKDVSLEAFREHLEAERDEK 632


>gi|125625170|ref|YP_001033653.1| prolyl-tRNA synthetase [Lactococcus lactis subsp. cremoris MG1363]
 gi|152112925|sp|A2RNT2|SYP_LACLM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|124493978|emb|CAL98976.1| ProS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071979|gb|ADJ61379.1| prolyl-tRNA synthetase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 616

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 108/282 (38%), Positives = 161/282 (57%), Gaps = 11/282 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L++R G + Q S GIY++LPL  + L+ +  I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLMRAGYVRQVSAGIYAYLPLANRVLEKLKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA+E+  P+L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE MT + R 
Sbjct: 61  FDEIGAVELLAPSLLTADLWRESGRYETYGEDLYKLKNRDSSDFILGPTHEETMTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPR+G++R REFLMKD YS+    +    +Y     +
Sbjct: 121 EITSYKKLPLNVYQIATKFRDEKRPRYGLLRGREFLMKDGYSYHADQDSLDETYLDYKKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG---ETQVFCSKDFMD-------- 229
           Y +IF R GL   P+ A++G +GG  S EFI + D     E  +  SK+           
Sbjct: 181 YEKIFERAGLNFKPIIADAGAMGGKDSQEFIAITDDRINLEKWLVLSKNITSIDEIPESV 240

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                E      +   ++IV      YAA  ++   +   ++
Sbjct: 241 LSEIQEELGKWLVAGEDTIVYAEGGDYAANIEMATSQFEPNV 282



 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 14/188 (7%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           NE             ARGIE+GHIF  GT+Y+  M+A    A+G+   + MG YGIG  R
Sbjct: 425 NEGEISPDGRGTLKFARGIEIGHIFKLGTRYTEAMNANILDANGRSIPMLMGCYGIGVSR 484

Query: 324 VVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +++A++E                    I +P  +APF I L+ +   D+   +   ++  
Sbjct: 485 LLSAILEQFARIYVEKTPREEFKFSWSINFPKELAPFDIHLVPVNVKDEAAMELTSELEE 544

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L   G  V  DD  E+ G +FA +DL+G P++V +G K  ++  VE+K R TG   +++
Sbjct: 545 KLRGKGYQVLVDDRNERAGVKFADSDLIGLPVRVTIGKK-AAEGIVEVKIRATGEVVEIN 603

Query: 431 LEEVINYA 438
            +E++N  
Sbjct: 604 KDELVNTI 611


>gi|290579880|ref|YP_003484272.1| putative prolyl-tRNA synthetase [Streptococcus mutans NN2025]
 gi|254996779|dbj|BAH87380.1| putative prolyl-tRNA synthetase [Streptococcus mutans NN2025]
          Length = 616

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 101/253 (39%), Positives = 150/253 (59%), Gaps = 3/253 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P DA++ SH LM+R G + Q S GIYS+LPL  + ++ +  I+REE
Sbjct: 1   MKQSNMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYSYLPLAHRVIEKIKEIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T++ R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTNLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHADYDSLDATYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS-ENTDF 239
           Y  IF R+GL    +  + G +GG  S EF+ +    +         +D  I S E    
Sbjct: 181 YEAIFTRVGLDFKAIIGDGGAMGGKDSQEFMAVTP--DRTDLEHWLVLDKAIGSIEEIPA 238

Query: 240 DDIISLNSIVEQW 252
           D +  +   +  W
Sbjct: 239 DVLKEIKQELSSW 251



 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 16/204 (7%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             AA  D+      ++ P+ K V    RGIE+GHIF  GT+YS  M +     +G+   +
Sbjct: 414 FEAAYVDIREVCEGEASPDGKGVLKFARGIEIGHIFKLGTRYSESMGSNILDENGRSIPI 473

Query: 313 QMGSYGIGAMRVVAAVIES-------------SHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MGSYGIG  R+++AVIE                   G+ +P ++APF + LI +   D+
Sbjct: 474 IMGSYGIGVSRILSAVIEQNARIFVNKTPKGAYRFSWGVNFPKTLAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V +    K+   L      V  D+  E+IGS+F+ +DL+G P++V VG K  SD  VE+K
Sbjct: 534 VSQQLTAKVEESLVDAHYSVLTDNRNERIGSKFSDSDLIGLPIRVTVGKK-ASDGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            + TG   +++ E ++   S    
Sbjct: 593 IKSTGDTIEVNAENLLETLSILID 616


>gi|73919796|sp|Q5UX65|SYT_HALMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 642

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 148/445 (33%), Gaps = 44/445 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           ++     +   RD      ++ L +  I +    G+  + P G+K L+ ++  +      
Sbjct: 230 EFLEQRRKAEERDHRKIGQEMDLFS--IDETTGPGLPLYEPNGKKILNELSDYVAGLNRD 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +   +LW +SG Y++Y  +M  L D ND+     P +      IF  +  
Sbjct: 288 AGYDEVETPHVFRTELWKKSGHYENYVDDMF-LLDVNDEEYGLKPMNCPGHATIFEQNSW 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  +++    +R E R    G+ R+  F + D +   + P+  +          L
Sbjct: 347 SYRDLPVRYFEDGKVYRKEQRGELSGLSRTWAFTIDDGH-LFVRPDQIEEEVLATVDIIL 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                  L      A                  T   +     +  +       +  ++ 
Sbjct: 406 DTLDTFNLDYTVQFA------------------TRPEKSVGGDEIWEKAESQLESVLEEQ 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                + E   A Y    D   E   D+L  +          G               ++
Sbjct: 448 DIDYVVEEGDGAFYGPKIDFAFE---DALGRHW--------DGPTVQLDFNMPERFDLSY 496

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G D ++H    +     G+      V+    +     +P  +AP +I L+ +   +   
Sbjct: 497 TGEDNEEHRPVMIHRALYGSYERFFMVLT---EHYNGKFPPWLAPEQIRLLPVSDDN--- 550

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              CE+I   L      V  +D    +G +   A     P   ++G        + ++ R
Sbjct: 551 ITYCEEIQDELDD--FRVTIEDRSWTVGKKIQQAHDDRVPYMCVIGDNEEEAGTISVRDR 608

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                +D+ + E  ++        R
Sbjct: 609 KEREEKDIDIAEFRDHLETEVEQQR 633


>gi|270002317|gb|EEZ98764.1| hypothetical protein TcasGA2_TC001328 [Tribolium castaneum]
          Length = 351

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 132/361 (36%), Positives = 200/361 (55%), Gaps = 34/361 (9%)

Query: 2   RRSKYFLPIL-----QENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNA 55
           R S+ F P+       E  R D    S +LML  G+I Q S G + +LPLG K+L+ +  
Sbjct: 8   RLSRLFQPVSVVPKNAEVKRHDITSKSQRLMLELGIIRQASPGCFHFLPLGVKSLEKLTR 67

Query: 56  IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
           ++ EE  + G  ++  PTL +A LW ++GR ++   E+ ++ DR+D++ I  PTHEE  +
Sbjct: 68  LVDEEMKKIGGQKIIFPTLTNAKLWEKTGRLETVSSELFQIKDRHDQSYILSPTHEEAAS 127

Query: 116 DIFRSH-IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           ++  S    SY++LP   YQI  K+RDE++PRFG+MR ++FLMKD YSFD   E +KH+Y
Sbjct: 128 NLLASLAPISYKHLPLKLYQITSKYRDEMKPRFGLMRGKQFLMKDMYSFDTDLETAKHTY 187

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           +++  SY RIF R+G+  + +   SG +GG+LSHE+   AD GE ++             
Sbjct: 188 DEICKSYDRIFRRIGIDFVKVVGCSGHMGGELSHEYHYKADVGEDKILTCNKCN------ 241

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                                Y+A ++V  E+   +          GIEVGH F  G KY
Sbjct: 242 ---------------------YSANTEVSGEEKCPNCGNTSVKIHLGIEVGHTFLLGEKY 280

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           S P++ATF    GK   +QMGSYG+G  R++AAVIE     + I WP  ++P+ + ++  
Sbjct: 281 SKPLNATFLNNHGKPDVLQMGSYGLGLSRILAAVIEVMSSEQEIRWPQILSPYSVIILPP 340

Query: 355 K 355
           K
Sbjct: 341 K 341


>gi|291059576|gb|ADD72311.1| prolyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 619

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 92/237 (38%), Positives = 136/237 (57%), Gaps = 1/237 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S +F P L+  P DA IASH+L++R G + + + G++++LPLG +    + AIIREE
Sbjct: 1   MKMSAFFAPTLRSAPADATIASHQLLMRAGYVRKIANGLFAYLPLGLRVRHKIEAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               G +E + P +  A+LW ESGR+   G E+LR  +R D  +++ PT EE  T + R 
Sbjct: 61  LEAIGCLECTAPVVTPAELWKESGRWYRMGAELLRAKNRLDHELLFSPTAEESFTALVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P + YQI  K+RDE+RPR+G+MR+REF M DAYSF         +Y K   +
Sbjct: 121 DCTSYKHFPLSLYQINAKYRDEIRPRYGLMRAREFTMADAYSFHTDCACLARTYEKFAHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           Y  IF R+GL  I + A  G +GG  S EF+V +  G+  +        +    E  
Sbjct: 181 YRAIFRRIGLSVIAVHAHLGAMGGQESEEFMVESAVGDNTLLLCPHCT-YAANCEKA 236



 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 5/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A +D+   +  D            +G E+GH+F  G KY+  M  TF    G   +  MG
Sbjct: 427 AVADLMLVRAGDRCIHCGAPLYEKKGNELGHLFKLGDKYTRSMHLTFTDEQGVRQFPLMG 486

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R +A+V+E+ HD +GI WP +++P+ + LI I  H Q    A E +Y +L   
Sbjct: 487 CYGIGLDRTLASVVENHHDTRGISWPLAISPYAVVLIPI-PHTQAPYAAAEALYVQLRTR 545

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V +DD  E+ G +FA ADL+G PL+V++ +K +    VE   R        + EE  
Sbjct: 546 GVEVLFDDRAERPGVKFADADLIGIPLRVVLSAKTLPR--VECTTRCGAHTYFFTQEEAS 603

Query: 436 NYASHRFS 443
            + +    
Sbjct: 604 EHIARLLE 611


>gi|157165397|ref|YP_001466693.1| prolyl-tRNA synthetase [Campylobacter concisus 13826]
 gi|171855061|sp|A7ZD35|SYP_CAMC1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|112800481|gb|EAT97825.1| prolyl-tRNA synthetase [Campylobacter concisus 13826]
          Length = 566

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 101/274 (36%), Positives = 151/274 (55%), Gaps = 1/274 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK++ P  +E P+DA + SH+ ++R G + Q   G+Y++LPLG+   D ++ +++EE
Sbjct: 1   MKFSKFYAPTTKEAPKDASLPSHQFLIRGGFVEQIGSGLYNYLPLGKIMHDKISRVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GA+E+S   + S +LW +SGRY+ +GKE+LR  DR D   +  PT+EE    + R 
Sbjct: 61  MNEAGALEVSFSVVTSGELWKQSGRYNVFGKELLRFKDRKDNDFVISPTNEEAAVALVRG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  KFRDE RPRFG++R REF MKD YSF  + E  K  ++ M  +
Sbjct: 121 KVTSYKQLPLNLYQINTKFRDEARPRFGLLRGREFTMKDGYSFHSSKEDLKREFDLMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF RLGL    + A+SG IGG  S EF+VLA  GE  + C +               
Sbjct: 181 YSKIFTRLGLNFRAVEADSGAIGGSGSKEFMVLASNGEDDILCCEACRYAANVEAARRKP 240

Query: 241 DIISLNSIVEQWTAPYAATS-DVHNEKLFDSLPE 273
            +    +            +  + +   F  + E
Sbjct: 241 RVSEAEAPEADAAKFLTPNAKTIKDVAEFFKVSE 274



 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 64/184 (34%), Positives = 90/184 (48%), Gaps = 3/184 (1%)

Query: 261 DVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   K  D  P        ++GIEVGHIF  G KYS  M+AT+   +GK     MG YG
Sbjct: 384 DLVKVKEGDKCPVCGGNLKLSKGIEVGHIFQLGDKYSAAMNATYLDENGKVKPFLMGCYG 443

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R++A +IE+SHD KG IW    APF + +I     D+       ++Y  L K G  
Sbjct: 444 IGISRLIAVMIEASHDEKGCIWKKECAPFDVEIIISNLKDEAGVKFAFELYESLKKAGVS 503

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +    +L+GFP  ++VG K  ++ KVE   R    +E +   +     
Sbjct: 504 VIIDDRNERFGVKMNDFELIGFPYALLVG-KEFANGKVEFITRDGLSKETIEANDAFRKI 562

Query: 439 SHRF 442
               
Sbjct: 563 KESL 566


>gi|302816171|ref|XP_002989765.1| hypothetical protein SELMODRAFT_130418 [Selaginella moellendorffii]
 gi|300142542|gb|EFJ09242.1| hypothetical protein SELMODRAFT_130418 [Selaginella moellendorffii]
          Length = 647

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 140/412 (33%), Gaps = 38/412 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y     +   RD  +      L     H+ S G   +LP G    + +   IR E  + G
Sbjct: 266 YMTKYEEAKKRDHRLLGKNQQLF--FFHELSPGSAFFLPKGTIVYNKLLQFIRSEYRKRG 323

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +  LW +SG    Y + M  + +   +     P +      +F+  ++SY
Sbjct: 324 FDEVVTPNIYNMKLWEQSGHAAHYKENMF-VFEIEKQEFGLKPMNCPGHCLLFQHRVRSY 382

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP       +  R+EL     G+ R R F   DA+ F +  +               +
Sbjct: 383 RELPLRIADFGVLHRNELSGALTGLTRVRRFSQDDAHIFCMESQVYDE-VKGCLDFLDYV 441

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G     ++  + P                           D    +     +    
Sbjct: 442 YTIFGFTY-DLKLSTRPENF-----------------LGESSLWDRAEGALADALNAHAK 483

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    D+   ++ D+L    + +   ++    F    ++ L  SA    
Sbjct: 484 PWQMNEGDGAFYGPKIDI---QVSDALNRKFQCATIQLD----FQSPIRFKLSYSAE--D 534

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
               +  V +    +G++  + A++   + GK   W        +++       +  +D 
Sbjct: 535 EAKIERPVIIHRAILGSIERMFAILLEDNAGKWPFWLSPRQAIVLTI------SEKFKDY 588

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            E++ A+L   G +V  D    ++  +   A +  +   ++VG+      +V
Sbjct: 589 AEEVRAKLHAAGFEVDVDVSDRKVDKKVREAQMAHYNYLLVVGAMEQEKGEV 640


>gi|313141032|ref|ZP_07803225.1| prolyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313133542|gb|EFR51159.1| prolyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
          Length = 596

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 98/233 (42%), Positives = 142/233 (60%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            FL  L+E+P DA+  S KL+LR G + + + GI++WLPLG K L+ + AI+REE +  G
Sbjct: 1   MFLRTLREDPADADTDSAKLLLRAGYVRKAAPGIWTWLPLGLKVLNKIEAIVREEIDGIG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A E+  P L   + +  + R++ YG+ + RL DR++   +  PTHEE+ T + +    SY
Sbjct: 61  AQEVHFPALLPREPYEATHRWEEYGENLFRLKDRHEADYLLAPTHEEMFTLLVKDMYSSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           ++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF +  EG K +Y     +Y RIF
Sbjct: 121 KDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTIDEEGMKKAYYDERGAYERIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            RL LK +P+ A SGP+GG  S EF+     GE     +     + + +  T 
Sbjct: 181 QRLDLKYVPVFAMSGPMGGSASEEFLAPMAIGEDTFALAPSGKAWNVEALTTP 233



 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 4/234 (1%)

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           A   E   F     +           +        V         T +    +  D  P+
Sbjct: 360 AGVAEPVRFFIDAHVAEGTEWIIGGDEAGKHRFHAVYGRDFKADGTVEAVEVRHGDMSPD 419

Query: 274 N--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   RG+E+G +F  G KYS  +       +GK   V MG YGIG  RV+A + E+
Sbjct: 420 GSGPLSFERGVEIGQVFQLGLKYSKALDLKVLDQNGKTVPVWMGCYGIGVSRVLACIAET 479

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGS 390
            HD +G+ W  +V       +     D    DA EK+ A L + G +V +DD  +   G 
Sbjct: 480 HHDERGLAW-PAVIAPAQVHVVATGKDAAAFDAAEKLVAELEERGIEVIYDDRKKVSPGV 538

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +F  A+L+G PL  + G   V++  +EI++R +     + + +     + R   
Sbjct: 539 KFKDAELIGVPLIAVAGRDTVNNGTIEIRNRDSSDSVAVPVADAAQTLASRLDT 592


>gi|146420108|ref|XP_001486012.1| hypothetical protein PGUG_01683 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146389427|gb|EDK37585.1| hypothetical protein PGUG_01683 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 719

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 155/446 (34%), Gaps = 43/446 (9%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +  L     ++ S G   WLP G +  + +  ++R E  +   
Sbjct: 304 LKFLKEAADRDHRKIGREQELF--FFNEMSPGSAFWLPHGTRIYNRLVDLMRSEYIQRDF 361

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + ++ LW  SG + +Y + M    D    +    P +      IF+S  +SYR
Sbjct: 362 QEVITPNMYNSKLWETSGHWGNYKENMFTF-DVEKDSFGLKPMNCPGHCLIFKSRERSYR 420

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP+      +  R+E      G+ R R F   DA+ F  T E  +      F    +++
Sbjct: 421 ELPWRVADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFC-TEEQIEDEIAGCFDFLQKVY 479

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G +       + P       E    A+                  + N    +    
Sbjct: 480 GIFGFEFKM-ELSTRPEKYVGELETWNNAEAKL-------------ESALNKFLGE--GK 523

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             +     A Y    D+    + D+L  + + +   ++    F    ++ L   A     
Sbjct: 524 WELNPGDGAFYGPKIDIM---ISDALKRSFQCATIQLD----FQLPNRFELEFKAE---T 573

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                 V +    +G++  +AA++    +     WP  ++P +I ++ +        D  
Sbjct: 574 SSHARPVMIHRAILGSVERMAAILT---EHFKGRWPFWLSPRQILVVPVGVK---YNDYA 627

Query: 366 EKIYARL-SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-- 422
           + I  +L          D  G  +  +     LL +    IVG +  ++  V I++R   
Sbjct: 628 QSIQQKLSKDHAFYADVDLSGNTLQKKVRSGQLLQYNFIFIVGEQEQAEQSVNIRNRDIQ 687

Query: 423 --TGIREDMSLEEVINYASHRFSNNR 446
              G  E +   +V+          R
Sbjct: 688 SEQGKNETVKFGDVVKQLKSLRDELR 713


>gi|312871363|ref|ZP_07731459.1| proline--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
 gi|312872484|ref|ZP_07732553.1| proline--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|312873339|ref|ZP_07733392.1| proline--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|311091129|gb|EFQ49520.1| proline--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|311092066|gb|EFQ50441.1| proline--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|311093115|gb|EFQ51463.1| proline--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
          Length = 566

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 109/273 (39%), Positives = 143/273 (52%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPASIGEDVIATNETGTYSANLEMARSID 240

Query: 241 DI---ISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                      +E+   P  AT +  +E L   
Sbjct: 241 TFSPEKEELKPLEKVATPDCATIEQLSEFLHVP 273



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/193 (33%), Positives = 94/193 (48%), Gaps = 2/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     N    D +          IEVGHIF  GT Y+  M+A F   +GK  
Sbjct: 376 DFKVNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQ 435

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MGSYGIG  R+++A++E       I WP  VAPF+I +I +   +       +K+  
Sbjct: 436 PIIMGSYGIGVTRMLSAIVEQHSTDNSIFWPKEVAPFEIHIIQMNMKNDEQTVVSKKLEE 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             S    DV +DD  E+ G +F  ADL+G P+++IVG + VS+  VE+K        +MS
Sbjct: 496 IFSDK-YDVLYDDRNERPGVKFNDADLIGAPIRIIVGRR-VSEQIVEVKKSTEQESVEMS 553

Query: 431 LEEVINYASHRFS 443
           L+ +  Y S    
Sbjct: 554 LDSLTEYISKELR 566


>gi|310796349|gb|EFQ31810.1| threonyl-tRNA synthetase [Glomerella graminicola M1.001]
          Length = 791

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/481 (17%), Positives = 154/481 (32%), Gaps = 71/481 (14%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD         L     H+ S G   WLP G +  + + A I+E+  +    E+
Sbjct: 318 LEEAAARDHRKLGQDQQLF--FFHELSPGSAMWLPHGARIYNTLLAYIKEQYFKRDYHEV 375

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + +A+LW  SG +D Y  +M  + D + +     P +      +F    K+Y  LP
Sbjct: 376 ISPNMYNAELWKISGHWDHYKDDMF-VIDVDKEKFGLKPMNCPGHCLMFAHTPKAYHQLP 434

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           +      +  R+E      G+ R R F   DA+ F    +      + +F     ++  L
Sbjct: 435 WRVADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCREDQIKSE-ISNLFDFLREMYGLL 493

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G     +R  + P       E    A+    Q              +     +     ++
Sbjct: 494 GFTFK-LRLSTRPEKYLGELETWNRAEDMLKQAL------------DEFALTEAGVPWTL 540

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS------------- 295
            E   A Y    D+   K+ D L    + +   ++      FG +Y              
Sbjct: 541 NEGDGAFYGPKIDI---KIMDVLNREWQCATIQLDFQLPQNFGLEYVSADAPAKSKEEAP 597

Query: 296 ---LPMSATFKGAD------------------------GKDHYVQMGSYGIGAMRVVAAV 328
                     K                           G    V +     G++     +
Sbjct: 598 AAPKAPEVKVKDPQAIIDSAAGVGEEKEKKRTIKPLTNGCQRPVIIHRAMAGSIERFTGI 657

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +    +     WP  ++P +I +I +        +  E++ A   K G  V  D  G  +
Sbjct: 658 LI---EHFAGKWPFWLSPRQIMVIPVGKG---FVEYAEEVQATFKKQGMWVDVDLSGNTL 711

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSN 444
             +   A L  +    +VG + +   +V I++R     +D    + + E +         
Sbjct: 712 PKKIRSAQLSQYNFIFVVGDEEMKHKQVNIRYRDDTSSQDRGKPVDVIEAVERLKKLREE 771

Query: 445 N 445
            
Sbjct: 772 R 772


>gi|312869026|ref|ZP_07729203.1| proline--tRNA ligase [Lactobacillus oris PB013-T2-3]
 gi|311095452|gb|EFQ53719.1| proline--tRNA ligase [Lactobacillus oris PB013-T2-3]
          Length = 578

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 105/303 (34%), Positives = 156/303 (51%), Gaps = 11/303 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P  +ENP DAE  SH +M R G I+Q S G++++LPL  + +  ++ I+ EE
Sbjct: 1   MKQSKLLIPTKKENPSDAEALSHIMMERAGYIYQISAGVWAYLPLAYRVIRKIHQIMHEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA +M  P++  ADLW ++GRY++YG  + +  D ND+  I GPT EE MT+I R 
Sbjct: 61  MEKAGAFQMETPSMLPADLWKQTGRYEAYGDTLYKFKDHNDREYILGPTDEEAMTEILRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQI  KFR+E RPR+GV+R +EF M DAYSF    EG   +Y     +
Sbjct: 121 SVKSYKKLPLVVYQITDKFRNEPRPRYGVLRGKEFSMLDAYSFAADEEGLDEAYQAQAQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    + A+SG IGGD S EF   A+ GE  +  +       +    + FD
Sbjct: 181 YRNIFDRAGLSYKVILADSGTIGGDNSQEFSAPAEIGEDVIVYTDGGYAANLEKATSKFD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +       E           V               ++ G++ G +       +     
Sbjct: 241 AVQQTAEPKELEKKATPGAHTVDEA-----------CASLGVDQGQMIKSMLYMAKMGED 289

Query: 301 TFK 303
            ++
Sbjct: 290 DYQ 292



 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 99/179 (55%), Gaps = 2/179 (1%)

Query: 261 DVHNEKLFDSLPEN-KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           D  N +  +  P+        GIE+GHIF  GT YS  + A     +G+   + MG YGI
Sbjct: 387 DFRNVQEGEIAPDGYPIKFTNGIEIGHIFKLGTGYSKKLGAQVLDKNGRLVDMIMGCYGI 446

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R+++AV E + D  G++WPDS+APF + +I + A          ++  +L+  G +V
Sbjct: 447 GVTRMLSAVAEQNADENGLVWPDSIAPFDVHVIPVNAKKDEQMTMANELEQQLTAAGYEV 506

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             DD  E+ G +FA +DL+G PL+V +G K  +D  VE+K R TG   ++  EE++N  
Sbjct: 507 LVDDRKERAGVKFADSDLIGIPLRVTIGKK-AADGIVEVKIRKTGETLEVKQEELVNTV 564


>gi|121708695|ref|XP_001272218.1| threonyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1]
 gi|119400366|gb|EAW10792.1| threonyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1]
          Length = 743

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 76/459 (16%), Positives = 143/459 (31%), Gaps = 41/459 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++   + +   R+         L      + S G    LP G K  + + A++R E  
Sbjct: 306 MSEHLKFLEEAEKRNHLRIGKDQELF--FFDEVSPGCPFLLPNGTKIFNALQALLRSEYR 363

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P +    +W  SG +  Y  +M +L D   +     P +      +F    
Sbjct: 364 KRGYQEVQTPNMYDVGVWKTSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHFVLFGHRE 422

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP       +  R+E      G+ R R+F   D + F    + S      +F   
Sbjct: 423 RSYRELPLRIADFGVLHRNEASGALSGLTRVRKFQQDDTHIFCTQDQISSE-IEGLFDFL 481

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I+   G     ++  + P                  +     D  ++      +    
Sbjct: 482 QSIYGLFGFTF-KLKLSTRP-----------------EKYLGDLDTWNYAEEQLKSAMTK 523

Query: 242 IISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPM 298
               +  + E   A Y    D+    + D+L    + +   ++      F      +   
Sbjct: 524 FKGADWTIDEGDGAFYGPKIDI---TIADALKREFQCATIQLDYQAPINFKLEYMTNEKG 580

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRV---VAAVIESSHDGKGIIWPDSVAPFKISLIN-- 353
            A       K+   +    G G  R      A+I S     GI+       +   +    
Sbjct: 581 QA-VMEESKKEGETKSNEPGPGRARPVVIHRAIIGSFERFLGILIEHFGGKWPFWISPRQ 639

Query: 354 --IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
             I        D  E++   L     +V  D  G  +  +     L  +    +VG++  
Sbjct: 640 ILIVPVMPAVNDYVEELQQILRGDKLNVDIDISGNTMQKKIRTGQLAQYNFIFVVGAQEK 699

Query: 412 SDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
               V I++R     ++    + LEE            +
Sbjct: 700 ESRSVNIRNRDDPATQNKGVMVPLEEAREKLRILRKERK 738


>gi|118618602|ref|YP_906934.1| threonyl-tRNA synthetase [Mycobacterium ulcerans Agy99]
 gi|166225468|sp|A0PSZ4|SYT_MYCUA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118570712|gb|ABL05463.1| threonyl-tRNA synthetase ThrS [Mycobacterium ulcerans Agy99]
          Length = 691

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/450 (14%), Positives = 129/450 (28%), Gaps = 49/450 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 261 IEEAQRRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIVRRELEDYSRRKHTEAGYQFV 319

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y   M                 +  +     P +  +   I
Sbjct: 320 NSPHITKAQLFHTSGHLDWYADGMFPPMQIDAEYNTDGTVRKPGQDYYLKPMNCPMHCLI 379

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FR+  +SYR LP   ++    +R E      G+ R R   M DA+ F    +        
Sbjct: 380 FRARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIFCTREQMRDEL-RS 438

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +    GL    +   +                    +   S +  +       
Sbjct: 439 LLRFVLDLLSDYGLTDFYLELST----------------KDPDKFVGSDEVWEEATNVLA 482

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               +            A Y       + ++ D+L    ++S   ++    F F  ++  
Sbjct: 483 EVGAESSLELVPDPGGAAFYGPKI---SVQVKDALGRTWQMSTIQLD----FNFPERF-- 533

Query: 297 PMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +  ADG       +     G++     ++   + G    W   V    I +    
Sbjct: 534 --GLEYTAADGTRQRPVMIHRALFGSIERFFGILTEHYAGAFPAWLAPVQAVGIPVA--- 588

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                      ++ A+L   G  V  D   +++  +         P  ++ G + V    
Sbjct: 589 ---DEHIAYLGQVAAQLKSHGVRVEVDTSDDRMAKKIVHHTNQKVPFMLLAGDRDVQADA 645

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           V  +         +  E  +       S  
Sbjct: 646 VSFRFGDRTQINGVPREAAVAAIVDWISRR 675


>gi|114600744|ref|XP_001153847.1| PREDICTED: threonyl-tRNA synthetase isoform 7 [Pan troglodytes]
          Length = 715

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 143/443 (32%), Gaps = 48/443 (10%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 363

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 364 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 422

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 423 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 481

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 482 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 523

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    +++L   
Sbjct: 524 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRFNLT-- 574

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                       V +    +G++  + A++    +  G  WP  ++P ++ ++ +     
Sbjct: 575 --------YKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP--- 620

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C +  +K+  +          D D G  +  +   A L  +   ++VG K      V I
Sbjct: 621 TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNI 680

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R   +  + ++ E I      
Sbjct: 681 RTRDNKVHGERTISETIERLQQL 703


>gi|315612430|ref|ZP_07887343.1| proline--tRNA ligase [Streptococcus sanguinis ATCC 49296]
 gi|315315411|gb|EFU63450.1| proline--tRNA ligase [Streptococcus sanguinis ATCC 49296]
          Length = 617

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 109/279 (39%), Positives = 155/279 (55%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            +      L  +V        +T   +   L  +  E K
Sbjct: 241 QEEIKAELLKWMVSGEDTIAYSTESSYAANLEMATNEYK 279



 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   G+ +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGVNFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + ++        + +
Sbjct: 593 IKATGDTIEVHADNLLETL--EILSKK 617


>gi|227549145|ref|ZP_03979194.1| threonyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078786|gb|EEI16749.1| threonyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 884

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 62/453 (13%), Positives = 137/453 (30%), Gaps = 50/453 (11%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD     +++ L +    +   G+  + P G      +    R      G 
Sbjct: 254 LHMLREAEKRDHRRLGNEMDLFS-FPDELGSGLPVFHPDGGIIRLAMEDHSRRRHIEAGY 312

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND------------KAMIYGPTHEEVM 114
             ++ P +    L+ +SG  D Y   M      +             +     P +  + 
Sbjct: 313 SFVNTPHVTKGSLFSKSGHLDWYADGMFPPMKLDGEIDDDGNVVKQPQDYYVKPMNCPMH 372

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHS 173
             IF S  +SYR LP   ++    +R E      G+ R+R F   DA+ +  T +  +  
Sbjct: 373 NLIFDSRGRSYRELPLRLFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIYC-TEDQLEAE 431

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
              +    + +    GL    +   +                    +     +       
Sbjct: 432 LTSVLEFIISLLKDYGLNDFYLELST----------------KDPQKYIGDDEIWQRSTD 475

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
              +  +             A Y       + +  D++    ++S   ++    F    +
Sbjct: 476 ILQSVAEKSGLELVPDPAGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLPER 528

Query: 294 YSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           +      T+   DG       +     G++     V+    +     +P  +AP ++  I
Sbjct: 529 FD----LTYTAPDGTKKRPVMIHRALFGSIERFFGVLL---EHYAGAFPAWLAPHQVVGI 581

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +        D    +  +L + G     D   +++  +         P  ++ G++ V 
Sbjct: 582 PVADDFAGHLD---SVTQKLRERGIRAEVDHSDDRMQKKIRNHTTSKVPFMLLAGARDVE 638

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              V  +         + + E ++      S  
Sbjct: 639 ADAVSFRFLDGTQVNGVPVAEAVDIIDAWVSER 671


>gi|159901383|ref|YP_001547630.1| prolyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894422|gb|ABX07502.1| prolyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 570

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 102/227 (44%), Positives = 141/227 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK      +E P DAE+ SH L++R G + Q S GIYS LPL  ++   ++ IIREE
Sbjct: 1   MRMSKLATSTTKEAPNDAELISHSLLVRAGYVKQQSAGIYSLLPLCVRSTQKISQIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     E+ +P + SADLW E+GRY+   +E+LR  DRN+K M+   THEEV+TDI R 
Sbjct: 61  MDAIDGQELLMPVVTSADLWRETGRYEGVTEELLRFKDRNNKDMVLNMTHEEVVTDIMRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSYR +P   YQIQ K+RDE RPR G++R REF MKDAYSF  T E     Y ++  +
Sbjct: 121 YIKSYRQMPVMVYQIQTKYRDEARPRGGIIRLREFTMKDAYSFHATIEDLDQYYEQVLNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RI+ R GL    ++++ G +GG ++HEF+ +   GE  +      
Sbjct: 181 YKRIYQRCGLPVEVVQSDPGMMGGKIAHEFMAVTPAGEDTLILCPSC 227



 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 98/187 (52%), Gaps = 3/187 (1%)

Query: 255 PYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                 D+ +                AR IEVG+IF  GTKYS  M   F    G+    
Sbjct: 372 FTGEVVDLTDVLEGQPCSRCGAPLTIARAIEVGNIFKLGTKYSAAMKCVFANEKGEMQPA 431

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYAR 371
            MG YGIG  R++A++IE  +D +G++ P +VAP+++ ++      +   +   +++Y+ 
Sbjct: 432 IMGCYGIGVQRILASLIEKFNDARGMMLPITVAPYQVHVVGTDYQSNAETKSVADQLYSD 491

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G  V  DD     G++F  ADL+G P+QVI+GS+ + + + E+K R TG    ++L
Sbjct: 492 LQAQGVTVLLDDRDVNAGNKFGDADLIGNPIQVIIGSRGLKNGQAEVKIRSTGETTMVAL 551

Query: 432 EEVINYA 438
            +++++ 
Sbjct: 552 ADLLSHV 558


>gi|311246798|ref|XP_003122346.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like
           [Sus scrofa]
          Length = 801

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/432 (16%), Positives = 141/432 (32%), Gaps = 42/432 (9%)

Query: 9   PILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            + +E   RD      +  L     H  S G   +LP G    + +   IREE ++    
Sbjct: 391 KLQEEAKTRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNALMDFIREEYHQRSFT 448

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+  P + S+ LW  SG +  Y + M    D +       P +      +F    +S+R 
Sbjct: 449 EVLSPNMYSSKLWEASGHWQHYRENMFTF-DVDKDTFALKPMNCPGHCLMFAHRPRSWRE 507

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           +P  F    +  R+EL      +       +D      T E  +            ++  
Sbjct: 508 MPIRFADFGVLHRNELSETLSSLTHVRRFQQDDAHIFCTVEQIEEEIKGCLKFLQSVYST 567

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G                    F +   T            D           +      
Sbjct: 568 FGFS------------------FQLNLSTRPEDFLGEVAIWDEAEKQLQNSLVEFGKPWK 609

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           +     A Y    D+   K+ D++    + +   ++    F    ++    + T+   +G
Sbjct: 610 MKPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRF----NLTYVSKEG 658

Query: 308 KD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            D  + V +    +G++  + A++  +++GK   W        I +         C    
Sbjct: 659 DDKKNPVIIHRAILGSVERMIAILSENYEGKWPFWLSPRQVIVIPVGP------ACEKYA 712

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++     + G     D D    +  +   A L  +   ++VG K  +++ V ++ R   
Sbjct: 713 LQVSNEFLEEGFMADVDLDHSCTLNKKIQNAQLAQYNFILVVGEKEKANNAVSVQTRDNK 772

Query: 425 IREDMSLEEVIN 436
           I  ++S+   I+
Sbjct: 773 IHGEISVTSAID 784


>gi|182414299|ref|YP_001819365.1| threonyl-tRNA synthetase [Opitutus terrae PB90-1]
 gi|177841513|gb|ACB75765.1| threonyl-tRNA synthetase [Opitutus terrae PB90-1]
          Length = 637

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/497 (15%), Positives = 144/497 (28%), Gaps = 88/497 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQ 61
            ++Y     Q   RD       L L    I +   +G+  W P G      +   I EE 
Sbjct: 167 LAQYLERQEQAKARDHRKLGKDLKLF--HIDEDVGQGLVLWTPNGAVIRQELQNFISEEL 224

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--------------------------- 94
            + G  ++  P +   +L+  SG +  Y                                
Sbjct: 225 RKQGYQQVFTPHIGKLELYKTSGHFPYYKDSQFSPIFETDSLAKAIGENCSCAEAFARLE 284

Query: 95  ------------------------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
                                   R  D+     +  P +      IF S   SYR+LP 
Sbjct: 285 AVSANLAAQINARTGKESIAPDRVRPDDQLLSGFMLKPMNCPHHIKIFASQPHSYRDLPV 344

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +    +R E      G+ R R F   DA+ F    + +             I   LG
Sbjct: 345 RLAEFGTVYRWEQSGELNGMTRVRGFTQDDAHLFCTEEQVAAE-VLGCLSLVKIILSTLG 403

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           +    +R              + L D    +        D    +       +    +  
Sbjct: 404 MADYRVR--------------VGLRDPDSNKYTGDAANWDKAENACREAAKTLGVPFTEE 449

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D     + D +    ++    ++      F          ++ GAD + 
Sbjct: 450 PGEAAFYGPKIDF---VIKDVIGREWQLGTVQVDYNLPVRFD--------LSYIGADNQP 498

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H    +     G+M     V+    +     +P  +AP ++ L+ I        D    +
Sbjct: 499 HRPVMIHRAPFGSMERFCGVLI---EHFAGDFPAWLAPEQVRLVPISDK---VADYARAL 552

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             RL         D+  +++G++   A++   P  +++G K    + V ++ R  G    
Sbjct: 553 LGRLKAENFRATLDEHSDKLGAKIRRAEIDKVPYTLVIGQKEAEANSVSVRSRARGDEGV 612

Query: 429 MSLEEVINYASHRFSNN 445
           M+ +  I       +  
Sbjct: 613 MTADAYIAKLKTEIATR 629


>gi|33286920|gb|AAH55371.1| Threonyl-tRNA synthetase [Mus musculus]
          Length = 722

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 151/449 (33%), Gaps = 44/449 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 305 KLLKEWEKFQEEAKNRDYRKTGRDQELY--FFHELSPGSCFFLPKGAYIYNTLMEFIRSE 362

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M    +   +     P +      +F  
Sbjct: 363 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSF-EVEKEQFALKPMNCPGHCLMFDH 421

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 422 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 480

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E    A+                        
Sbjct: 481 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIEIWNQAEK-----------------QLENSL 522

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 523 NEFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 571

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 572 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 627

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
              C +  +K+  +          D D G  +  +   A L  +   ++VG K  +   V
Sbjct: 628 --TCDEYAQKVRQQFHDAKFMADTDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTV 685

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            I+ R   +  + ++EE +          
Sbjct: 686 NIRTRDNKVHGERTVEETVRRLQQLKQTR 714


>gi|325911837|ref|ZP_08174241.1| proline--tRNA ligase [Lactobacillus iners UPII 143-D]
 gi|325476343|gb|EGC79505.1| proline--tRNA ligase [Lactobacillus iners UPII 143-D]
          Length = 566

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 109/273 (39%), Positives = 143/273 (52%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNETGTYSANLEMARSID 240

Query: 241 DI---ISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                      +E+   P  AT +  +E L   
Sbjct: 241 TFSPEKEELKPLEKVATPDCATIEQLSEFLHVP 273



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/193 (33%), Positives = 94/193 (48%), Gaps = 2/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     N    D +          IEVGHIF  GT Y+  M+A F   +GK  
Sbjct: 376 DFKVNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQ 435

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MGSYGIG  R+++A++E       I WP  VAPF+I +I +   +       +K+  
Sbjct: 436 PIIMGSYGIGVTRMLSAIVEQHSTDNSIFWPKEVAPFEIHIIQMNMKNDEQTVVSKKLEE 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             S    DV +DD  E+ G +F  ADL+G P+++IVG + VS+  VE+K        +MS
Sbjct: 496 IFSDK-YDVLYDDRNERPGVKFNDADLIGAPIRIIVGRR-VSEQIVEVKKSTEQESVEMS 553

Query: 431 LEEVINYASHRFS 443
           L+ +  Y S    
Sbjct: 554 LDSLTEYISKELR 566


>gi|222475619|ref|YP_002564036.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str. Florida]
 gi|255003612|ref|ZP_05278576.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str. Puerto
           Rico]
 gi|254783506|sp|B9KH76|SYT_ANAMF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|222419757|gb|ACM49780.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str. Florida]
          Length = 636

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 143/438 (32%), Gaps = 40/438 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   + +   RD    +  L      I   + G   W   G      +   IR +  
Sbjct: 230 LASYIHNMQEAEKRDHRKIAKDLGWF--HIQNEALGQVFWHDKGWVIYRIIEEYIRCKLK 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G +E+  P +    LW +SG ++ + + M  + D + K +   P +      IF+S I
Sbjct: 288 KHGYLEVKTPIMLDRKLWEKSGHWEKFKENMFVVED-DKKELAIKPMNCPCHVQIFKSKI 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP    +  +  R+E     +G+MR R F   DA+ F    +       + +   
Sbjct: 347 RSYKELPIRMAEFGMCHRNEPSGSLYGLMRVRGFTQDDAHIFCTHEQVRDE-VLRFYELL 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++   G  S+ ++    P     S E                   D    S     + 
Sbjct: 406 MEVYKDFGFDSVTVKLSDRPENRIGSDE-----------------IWDRSEQSLMEPMNA 448

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +    +I +   A Y    +     L DS+    +     ++       G        A 
Sbjct: 449 LGVQYTINKGEGAFYGPKLEF---TLKDSIGREWQCGTVQLDFVLPDRLG--------AY 497

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DGK H    +    +G +     ++   + G    W           + I      
Sbjct: 498 YIGEDGKKHIPVIIHRAVLGTIERFIGILIEHYAGNIPAW------LAPVQLEILTVSGE 551

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +    +    S+    V  +   E I  +   A     P+  +VG     D  V ++ 
Sbjct: 552 VAEYARDLAEMASQENVRVELNAAEENISHKIRKAIFNKVPIVWVVGKSEAGDRCVSVRR 611

Query: 421 RLTGIREDMSLEEVINYA 438
             +G    M+  + +   
Sbjct: 612 YGSGETCRMAAGKALKTL 629


>gi|312966332|ref|ZP_07780558.1| prolyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|312289575|gb|EFR17469.1| prolyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|323190405|gb|EFZ75680.1| prolyl-tRNA synthetase [Escherichia coli RN587/1]
          Length = 547

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 111/210 (52%), Positives = 148/210 (70%), Gaps = 1/210 (0%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+REE N  GAIE+ +P +Q ++LW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREEMNNAGAIEVLMPVVQPSELWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++ YG E+LR+ADR D+  + GPTHEEV+TD+ R+ + SY+ LP  FYQIQ KFRDE+RP
Sbjct: 61  WEQYGPELLRIADRGDRPFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y +IF R+GL    ++A++G IGG 
Sbjct: 121 RFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGS 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            SHEF VLA +GE  V  S    D+    E
Sbjct: 181 ASHEFQVLAQSGEDDVVFSDT-SDYAANIE 209



 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 113/187 (60%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 360 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 419

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 420 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 479

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++++
Sbjct: 480 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVD 539

Query: 437 YASHRFS 443
           Y   +  
Sbjct: 540 YLVKQIK 546


>gi|255004741|ref|ZP_05279542.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str. Virginia]
          Length = 636

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 143/438 (32%), Gaps = 40/438 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   + +   RD    +  L      I   + G   W   G      +   IR +  
Sbjct: 230 LASYIHNMQEAEKRDHRKIAKDLGWF--HIQNEALGQVFWHDKGWVIYRIIEEYIRCKLK 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G +E+  P +    LW +SG ++ + + M  + D + K +   P +      IF+S I
Sbjct: 288 KHGYLEVKTPIMLDRKLWEKSGHWEKFKENMFVVED-DKKELAIKPMNCPCHVQIFKSKI 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP    +  +  R+E     +G+MR R F   DA+ F    +       + +   
Sbjct: 347 RSYKELPIRMAEFGMCHRNEPSGSLYGLMRVRGFTQDDAHIFCTHEQVRDE-VLRFYELL 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++   G  S+ ++    P     S E                   D    S     + 
Sbjct: 406 MEVYKDFGFDSVTVKLSDRPENRIGSDE-----------------IWDRSEQSLMEPMNA 448

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +    +I +   A Y    +     L DS+    +     ++       G        A 
Sbjct: 449 LGVQYTINKGEGAFYGPKLEF---TLKDSIGREWQCGTVQLDFVLPDRLG--------AY 497

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DGK H    +    +G +     ++   + G    W           + I      
Sbjct: 498 YIGEDGKKHIPVIIHRAVLGTIERFIGILIEHYAGNIPAW------LAPVQLEILTVSGE 551

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +    +    S+    V  +   E I  +   A     P+  +VG     D  V ++ 
Sbjct: 552 VAEYARDLAEMASQENVRVELNAAEENISHKIRKAIFNKVPIVWVVGKSEAGDRCVSVRR 611

Query: 421 RLTGIREDMSLEEVINYA 438
             +G    M+  + +   
Sbjct: 612 YGSGETCRMAAGKALKTL 629


>gi|120403545|ref|YP_953374.1| threonyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
 gi|166225469|sp|A1T868|SYT_MYCVP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119956363|gb|ABM13368.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Mycobacterium
           vanbaalenii PYR-1]
          Length = 691

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 63/445 (14%), Positives = 130/445 (29%), Gaps = 49/445 (11%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 258 IEEAQKRDHRKLGVELDLFS-FPDELGSGLPVFHPKGGVVRRELEEYSRRKHIEAGYEFV 316

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDI 117
           + P +    L++ SG  + Y   M                 +  +     P +  +   I
Sbjct: 317 NTPHITKEHLYITSGHLEWYADGMFPAMHIDAEYNDDGTVRKPGQDYYLKPMNCPMHHLI 376

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +RS  +SYR LP   ++    +R E      G+ R R     DA+ +    E       +
Sbjct: 377 YRSRGRSYRELPLRLFEFGSVYRYEKSGVVHGLTRVRGMTQDDAHIYCTREEMRDEL-AR 435

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +    GL    +   +                    +   S D  +    +  
Sbjct: 436 LLQFVLDLLADYGLDDFYLELST----------------KDPDKFVGSDDMWEEATETLR 479

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              +             A Y       + ++ D+L  N ++S   ++    F    ++  
Sbjct: 480 EVAESSGLHLVPDPGGAAFYGPKI---SVQVRDALGRNWQMSTIQLD----FNMPDRF-- 530

Query: 297 PMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +  ADG       +     G++     V+   + G    W   V    I +    
Sbjct: 531 --ELEYTAADGTRKRPVLIHRALFGSIERFFGVLTEHYAGAFPAWLAPVQVVGIPVA--- 585

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     + + A+L  +G     D   +++  +         P  ++ G + V    
Sbjct: 586 ---DDHIRYLDGLVAQLRALGIRAEVDTSDDRMAKKIVNHTNQKVPFMLLAGDRDVEAEA 642

Query: 416 VEIKHRLTGIREDMSLEEVINYASH 440
           V  +         +  E+ +     
Sbjct: 643 VSFRFGDRTQVNGVPREQAVAAIVD 667


>gi|254995424|ref|ZP_05277614.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str.
           Mississippi]
          Length = 636

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 142/438 (32%), Gaps = 40/438 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   + +   RD    +  L      I   + G   W   G      +   IR +  
Sbjct: 230 LASYIHNMQEAEKRDHRKIAKDLGWF--HIQNEALGQVFWHDKGWVIYRIIEEYIRCKLK 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P +    LW +SG ++ + + M  + D + K +   P +      IF+S I
Sbjct: 288 KHGYHEVKTPIMLDRKLWEKSGHWEKFKENMFVVED-DKKELAIKPMNCPCHVQIFKSKI 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP    +  +  R+E     +G+MR R F   DA+ F    +       + +   
Sbjct: 347 RSYKELPIRMAEFGMCHRNEPSGSLYGLMRVRGFTQDDAHIFCTHEQVRDE-VLRFYELL 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++   G  S+ ++    P     S E                   D    S     + 
Sbjct: 406 MEVYKDFGFDSVTVKLSDRPENRIGSDE-----------------IWDRSEQSLMEPMNA 448

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +    +I +   A Y    +     L DS+    +     ++       G        A 
Sbjct: 449 LGVQYTINKGEGAFYGPKLEF---TLKDSIGREWQCGTVQLDFVLPDRLG--------AY 497

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DGK H    +    +G +     ++   + G    W           + I      
Sbjct: 498 YIGEDGKKHIPVIIHRAILGTIERFIGILIEHYAGNIPAW------LAPVQLEILTVSGE 551

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +    +    S+    V  +   E I  +   A     P+  +VG     D  V ++ 
Sbjct: 552 VAEYARDLAEMASQENVRVELNAAEENISHKIRKAIFNKVPIVWVVGKSEAGDRCVSVRR 611

Query: 421 RLTGIREDMSLEEVINYA 438
             +G    M+  + +   
Sbjct: 612 YGSGETCRMAAGKALKTL 629


>gi|289548806|ref|YP_003473794.1| prolyl-tRNA synthetase [Thermocrinis albus DSM 14484]
 gi|289182423|gb|ADC89667.1| prolyl-tRNA synthetase [Thermocrinis albus DSM 14484]
          Length = 570

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 108/239 (45%), Positives = 155/239 (64%), Gaps = 1/239 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF    +++P D E  SHK +++ G I Q + G+Y + P   + L  + +I+R+E
Sbjct: 1   MRWSRYFWYTSKDDPADVEAPSHKYLVKGGFIKQIASGVYQYTPPALRVLRKIESIVRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +RTGA E+ +  L  A+LW E+GR+D YG+E+  L DR+ +    GPTHEE +TD+FRS
Sbjct: 61  MDRTGAQEVLLTVLNPAELWRETGRWDLYGRELFTLKDRHGRDYCLGPTHEEEVTDLFRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SYR LP   YQIQ+KFRDE RPRFG++R+REF+MKDAYSFDL    +  SY  M  +
Sbjct: 121 YVTSYRQLPLILYQIQVKFRDEKRPRFGLIRAREFIMKDAYSFDLDEFSAIMSYEAMKFA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y RIF ++ LK++ + A  G IGG  SHEF+VL D GE +V   ++   +   +E    
Sbjct: 181 YDRIFKKMRLKTLMVEASVGAIGGKSSHEFVVLTDYGEARVAYCENCS-YAANAEIVPL 238



 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 79/194 (40%), Positives = 110/194 (56%), Gaps = 3/194 (1%)

Query: 255 PYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            Y    DV   +  D  P+        RG+EVGHIF  GT+YS PM A  K ++GKD  V
Sbjct: 377 HYGDMVDVCQVEEGDPCPKCGAPLKVNRGLEVGHIFLLGTRYSEPMKAFVKDSEGKDVPV 436

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R ++A++E  HD KGI WP  VAPF++ ++ +   D+  R   EK+Y   
Sbjct: 437 VMGCYGIGISRCMSAIVEQHHDEKGIKWPTPVAPFELDIVCVNISDEEQRAVAEKLYTTA 496

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            ++G +V +DD  E  GS+FA ADL GFP +++VG K V + KVE++ R TG R D  +E
Sbjct: 497 QEMGVEVLYDDRDESPGSKFADADLCGFPYRIVVGKK-VKEGKVEVQSRHTGERWDAPIE 555

Query: 433 EVINYASHRFSNNR 446
           E +          +
Sbjct: 556 EAVGQVKELIHQEK 569


>gi|322374996|ref|ZP_08049510.1| proline--tRNA ligase [Streptococcus sp. C300]
 gi|321280496|gb|EFX57535.1| proline--tRNA ligase [Streptococcus sp. C300]
          Length = 617

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 105/257 (40%), Positives = 148/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  +V    
Sbjct: 241 QEEIKTELLKWMVSGED 257



 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   G+ +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGVNFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   +K+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTDKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + ++        + +
Sbjct: 593 IKATGDTIEVHADNLLETL--EILSKK 617


>gi|312864390|ref|ZP_07724623.1| proline--tRNA ligase [Streptococcus downei F0415]
 gi|311100111|gb|EFQ58322.1| proline--tRNA ligase [Streptococcus downei F0415]
          Length = 633

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 3/305 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DA++ SH LM+R G + Q + G+YS+LPL  + ++    I+REE
Sbjct: 15  MKQSQMLIPTLREMPSDAQVISHALMVRAGYVRQVTAGVYSYLPLANRVIEKFKTIMREE 74

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG ++ +L +R+    I GPTHEE  T + R 
Sbjct: 75  FDKIGAVEMLAPALLTADLWKESGRYETYGDDLYKLKNRDQAEFILGPTHEETFTALVRD 134

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y     +
Sbjct: 135 SIKSYKQLPMNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDEAYEAYRQA 194

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    +  + G +GG  S EF+ +    +         +D  I S +   +
Sbjct: 195 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAVTP--DRTDLDHWVVLDKSISSLDEIPE 252

Query: 241 DI-ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D+   +   + +W      T    ++  + +  E      +  +        TK S P  
Sbjct: 253 DVLAQIKDELNKWLVSGEDTIAYSDQSGYAANLEMATSLYKPSQAATTQEELTKVSTPDC 312

Query: 300 ATFKG 304
            T   
Sbjct: 313 KTIDD 317



 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/195 (33%), Positives = 104/195 (53%), Gaps = 16/195 (8%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   K  +  P+ +     ARGIE+GHIF  GT+YS  M A     +G+   + MG Y
Sbjct: 434 VDIREVKEGEPSPDGQGTLKFARGIEIGHIFKLGTRYSDSMGANILDENGRSIPIIMGCY 493

Query: 318 GIGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           GIG  R+++AVIE                   GI +P  +APF + LI +   DQV +D 
Sbjct: 494 GIGVSRILSAVIEQHARLFVNKTPKGAYRFSWGINFPKELAPFDVHLITVNTKDQVAQDL 553

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              + ++L K G  V  DD  E++GS+F+ +DL+G P++V VG K  ++  VE+K + TG
Sbjct: 554 TANLESQLVKAGYQVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATG 612

Query: 425 IREDMSLEEVINYAS 439
              +++ + ++   +
Sbjct: 613 DTIEVNAQNLLETLT 627


>gi|303557|dbj|BAA03654.1| DrpA protein [Escherichia coli W3110]
          Length = 155

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 91/155 (58%), Positives = 116/155 (74%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+ R+
Sbjct: 61  MNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            + SY+ LP  FYQIQ KFRDE+RPRFGVMRSREF
Sbjct: 121 ELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREF 155


>gi|325913484|ref|ZP_08175850.1| proline--tRNA ligase [Lactobacillus iners UPII 60-B]
 gi|325477253|gb|EGC80399.1| proline--tRNA ligase [Lactobacillus iners UPII 60-B]
          Length = 566

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 109/273 (39%), Positives = 143/273 (52%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNETGTYSANLEMARSID 240

Query: 241 DI---ISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                      +E+   P  AT +  +E L   
Sbjct: 241 TFSPEKEELKPLEKVATPDCATIEQLSEFLHVP 273



 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 95/193 (49%), Gaps = 2/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     N    D +          IEVGHIF  GT Y+  M+A F   +GK  
Sbjct: 376 DFKVNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQ 435

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MGSYGIG  R+++A++E      GI WP  VAPF+I +I +   +       +K+  
Sbjct: 436 PIIMGSYGIGVTRMLSAIVEQHSTDNGIFWPKEVAPFEIHIIQMNMKNDEQTVVSKKLEE 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             S    DV +DD  E+ G +F  ADL+G P+++IVG + VS+  VE+K        +MS
Sbjct: 496 IFSDK-YDVLYDDRNERPGVKFNDADLIGAPIRIIVGRR-VSEQIVEVKKSTEQESVEMS 553

Query: 431 LEEVINYASHRFS 443
           L+ +  Y S    
Sbjct: 554 LDSLTEYISKELR 566


>gi|329919866|ref|ZP_08276804.1| proline--tRNA ligase [Lactobacillus iners SPIN 1401G]
 gi|328936956|gb|EGG33386.1| proline--tRNA ligase [Lactobacillus iners SPIN 1401G]
          Length = 566

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 109/273 (39%), Positives = 143/273 (52%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNETGTYSANLEMARSID 240

Query: 241 DI---ISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                      +E+   P  AT +  +E L   
Sbjct: 241 TFSPEKEELKPLEKVATPDCATIEQLSEFLHVP 273



 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 95/193 (49%), Gaps = 2/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     N    D +          IEVGHIF  GT Y+  M+A F   +GK  
Sbjct: 376 DFKVNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQ 435

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MGSYGIG  R+++A++E      GI WP  VAPF+I +I +   +       +K+  
Sbjct: 436 PIIMGSYGIGVTRMLSAIVEQHSTDNGIFWPKEVAPFEIHIIQMNMKNDEQTVVSKKLEE 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             S    DV +DD  E+ G +F  ADL+G P+++IVG + VS+  VE+K        +MS
Sbjct: 496 IFSDK-YDVLYDDRNERPGVKFNDADLIGAPIRIIVGRR-VSEQIVEVKKSTEQESVEMS 553

Query: 431 LEEVINYASHRFS 443
           L+ +  Y S    
Sbjct: 554 LDSLTEYISKELR 566


>gi|309809554|ref|ZP_07703412.1| proline--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
 gi|308170226|gb|EFO72261.1| proline--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
          Length = 483

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 110/273 (40%), Positives = 144/273 (52%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L N   II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRNAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNETGTYSANLEMARSID 240

Query: 241 DI---ISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                      +E+   P  AT +  +E L   
Sbjct: 241 TFSPEKEELKPLEKIATPDCATIEQLSEFLHVP 273



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/108 (35%), Positives = 52/108 (48%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     N    D +          IEVGHIF  GT Y+  M+A F   +GK  
Sbjct: 376 DFKVNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQ 435

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            + MGSYGIG  R+++A++E      GI WP  VAPF+I +I +    
Sbjct: 436 PIIMGSYGIGVTRMLSAIVEQHSTDNGIFWPKEVAPFEIHIIQMNMKK 483


>gi|171741061|ref|ZP_02916868.1| hypothetical protein BIFDEN_00127 [Bifidobacterium dentium ATCC
           27678]
 gi|171276675|gb|EDT44336.1| hypothetical protein BIFDEN_00127 [Bifidobacterium dentium ATCC
           27678]
          Length = 611

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 104/284 (36%), Positives = 153/284 (53%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE 
Sbjct: 6   RMSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLTVLNKIENIIREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
               A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +  
Sbjct: 66  ASIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDL 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +Y
Sbjct: 126 YSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +  T   +
Sbjct: 186 ERIFDRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEALTTPEPE 245

Query: 242 IISLNSI--VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
            I        E+   P AAT D   E    + P +   + +  +
Sbjct: 246 AIDCTDTPAAEKRPTPDAATIDKMVEFANANHPRSDGRAWQASD 289



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 4/189 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+        RG+E+G +F  G KYS  +       +GK   V MG
Sbjct: 420 GTVEAVEVRHGDMSPDGSGPLSFERGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMG 479

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+A + E+ HD KG+ W  +V       +     D    +A E++ A L   
Sbjct: 480 SYGIGVSRVMACIAETHHDDKGLAW-PAVIAPAQVHVVATGKDAAAFEAAEQLIAELEAK 538

Query: 376 GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD  +   G +F  A+L+G PL  + G   V++  +E++ R     E + + + 
Sbjct: 539 GIEVIFDDRKKVSPGVKFKDAELIGVPLIAVAGRDTVNNGTIEVRDRNGENAEAVPVADA 598

Query: 435 INYASHRFS 443
               + R +
Sbjct: 599 AQVIADRVA 607


>gi|182414610|ref|YP_001819676.1| prolyl-tRNA synthetase [Opitutus terrae PB90-1]
 gi|177841824|gb|ACB76076.1| prolyl-tRNA synthetase [Opitutus terrae PB90-1]
          Length = 590

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 103/290 (35%), Positives = 169/290 (58%), Gaps = 16/290 (5%)

Query: 1   MR-RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           M+  S+YF+P L+E+P DAEIASHKL++R G++ +   G+Y++LPLG + +  +  + RE
Sbjct: 1   MKLWSQYFVPTLKESPADAEIASHKLLIRAGLVRKLGGGLYTYLPLGLRVMQKLTQLCRE 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-------LADRNDKAMIYGPTHEE 112
           E  R GAIE+ +P +   +LW +  R+ +  + M R            +   + GPTHEE
Sbjct: 61  ELERAGAIELWMPHVHPVELWQQGPRWAAAREIMFRADSAGDGKHGPREPEFVLGPTHEE 120

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           ++T + ++ I SYR+LP  F+QI  KFR+E+RPRFG+MR+REF+M DAYSFD+  + +  
Sbjct: 121 IVTPLVKAEITSYRDLPKNFFQIATKFRNEIRPRFGLMRAREFVMMDAYSFDVDDDRAIK 180

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           SY  M  +Y   F R+G+++I + A++G +GG  SHEF+V A+ G+  V  ++    +  
Sbjct: 181 SYQAMKAAYEAFFRRIGVQAIAVEADTGVMGGSFSHEFMVPAEVGDDDVIYNE-ASGYAA 239

Query: 233 PSENTDFDDI------ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
             E      +       +    VE++  P    +    E    S+P +++
Sbjct: 240 NREKARSALVPADLSDAAPVGAVEEFATP-GVVTIAALEAAPYSVPADRQ 288



 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/157 (38%), Positives = 83/157 (52%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                RGIEVGHIF  GTKYS    A +     + H + MGSYGIG  R + A+IE SHD
Sbjct: 414 PLQVRRGIEVGHIFKLGTKYSEKSGAVYTDDQKQSHLMVMGSYGIGISRTLQAIIEQSHD 473

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             GI+WP + APF + +  +        D   K+ A   K G +V  DD  E+ G +F  
Sbjct: 474 ADGIVWPWNSAPFHVLICVLDPQLAEAVDLARKLAAAAEKAGAEVLVDDRAERPGVKFKD 533

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           ADL+G PL++ +G K + +  VE+K R       + L
Sbjct: 534 ADLVGIPLRLTIGGKGLKEGVVELKWRHQKDVAKVPL 570


>gi|194477323|ref|YP_002049502.1| prolyl-tRNA synthetase [Paulinella chromatophora]
 gi|171192330|gb|ACB43292.1| prolyl-tRNA synthetase [Paulinella chromatophora]
          Length = 604

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 112/248 (45%), Positives = 153/248 (61%), Gaps = 3/248 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S   L  L+++P +AE+ SHKL+LR G I + + GIY++LPL  + L  +++ +REE
Sbjct: 1   MRVSHLMLVTLRDDPAEAEVISHKLLLRAGYIRRVTIGIYAYLPLLWRVLKKISSCVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
               GAIE+ +P LQ AD+W  S R+  Y +    M  L DR  + +  GPTHEEV+T++
Sbjct: 61  MTSAGAIELLMPQLQPADIWQLSKRWAGYTQGEGIMFNLKDRQGRELALGPTHEEVVTNL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
             + IKSYR LP T YQIQ KFRDE+RPRFG+MRSREF+MKDAYSF  +    K SY++M
Sbjct: 121 VDNLIKSYRQLPCTLYQIQTKFRDEIRPRFGLMRSREFVMKDAYSFHSSEIDLKVSYDRM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            + Y  IF R GL  + + A+SG IGG  S EF+V A+ GE  +  S+D           
Sbjct: 181 DLGYRNIFRRCGLNVVAVEADSGSIGGAASQEFMVTAEAGEDLILISEDKSYAANQERAI 240

Query: 238 DFDDIISL 245
               I  +
Sbjct: 241 SLPKIAFI 248



 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 4/187 (2%)

Query: 260 SDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            D+   +  D    N        RGIEVGHIF  G KYS+ ++A +    G      MG 
Sbjct: 410 VDLRAAQANDQCIHNPIYTLTENRGIEVGHIFRLGHKYSIALNANYTNEIGNQEPFWMGC 469

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+  A +E  HD KGI WP S+APF++ ++ +   D++ R   E +Y+ +    
Sbjct: 470 YGIGISRLSQAAVEQHHDQKGICWPLSIAPFEVIIVIVSIQDEIQRTLGEALYSIMKAAR 529

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD  ++ G +F  ADL+G P Q+++G +   ++++E+  R+T   E +    ++ 
Sbjct: 530 VDVLIDDRQDRAGVKFKDADLIGIPWQIVIG-RGAINNQIELVERITSRSEQLDAGYLVK 588

Query: 437 YASHRFS 443
           Y      
Sbjct: 589 YFLQYLE 595


>gi|309804213|ref|ZP_07698290.1| proline--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|312875784|ref|ZP_07735776.1| proline--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
 gi|308163616|gb|EFO65886.1| proline--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|311088688|gb|EFQ47140.1| proline--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
          Length = 566

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 109/273 (39%), Positives = 143/273 (52%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNETGTYSANLEMARSID 240

Query: 241 DI---ISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                      +E+   P  AT +  +E L   
Sbjct: 241 TFSPEKEELKPLEKIATPDCATIEQLSEFLHVP 273



 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 95/193 (49%), Gaps = 2/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     N    D +          IEVGHIF  GT Y+  M+A F   +GK  
Sbjct: 376 DFKVNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQ 435

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MGSYGIG  R+++A++E      GI WP  VAPF+I +I +   +       +K+  
Sbjct: 436 PIIMGSYGIGVTRMLSAIVEQHSTDNGIFWPKEVAPFEIHIIQMNMKNDEQTVVSKKLEE 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             S    DV +DD  E+ G +F  ADL+G P+++IVG + VS+  VE+K        +MS
Sbjct: 496 IFSDK-YDVLYDDRNERPGVKFNDADLIGAPIRIIVGRR-VSEQIVEVKKSTEQESVEMS 553

Query: 431 LEEVINYASHRFS 443
           L+ +  Y S    
Sbjct: 554 LDSLTEYISKELR 566


>gi|62126444|gb|AAX64147.1| proline tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
          Length = 547

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 111/210 (52%), Positives = 148/210 (70%), Gaps = 1/210 (0%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+REE N  GAIE+S+P +Q ADLW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++ YG E+LR  DR ++  + GPTHEEV+TD+ R+ + SY+ LP  F+QIQ KFRDE+RP
Sbjct: 61  WEQYGPELLRFVDRGERPFVLGPTHEEVITDLVRNELSSYKQLPLNFFQIQTKFRDEVRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y RIF R+GL    ++A++G IGG+
Sbjct: 121 RFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSRIFSRMGLDFRAVQADTGSIGGN 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            SHEF VLA +GE  +  S    D+    E
Sbjct: 181 ASHEFQVLAQSGEDDIVFSD-VSDYAANIE 209



 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 358 VVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 417

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 418 CYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 477

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   ++
Sbjct: 478 QGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGKKSLIKTGDI 537

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 538 VDYLVKAIK 546


>gi|331267089|ref|YP_004326719.1| prolyl-tRNA synthetase [Streptococcus oralis Uo5]
 gi|326683761|emb|CBZ01379.1| prolyl-tRNA synthetase [Streptococcus oralis Uo5]
          Length = 617

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 105/257 (40%), Positives = 148/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  +V    
Sbjct: 241 QEEIKAELLKWMVSGED 257



 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   G+ +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGVNFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + ++        + +
Sbjct: 593 IKATGDTIEVHADNLLETL--EILSKK 617


>gi|315638151|ref|ZP_07893333.1| proline--tRNA ligase [Campylobacter upsaliensis JV21]
 gi|315481687|gb|EFU72309.1| proline--tRNA ligase [Campylobacter upsaliensis JV21]
          Length = 568

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 114/358 (31%), Positives = 169/358 (47%), Gaps = 14/358 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+++ P  +E P+DA + SH  + R G I Q+  G+Y++LPLG+     + +II+EE
Sbjct: 1   MKFSQFYAPTFKEAPKDATLPSHIFLTRAGFIEQNGSGLYNFLPLGKMVYSKIESIIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E S+     A  W ESGRY+ +GKE+LR  DR +   + GPTHEE M ++ ++
Sbjct: 61  MDKAGALETSLSFTTPASFWRESGRYNVFGKELLRFKDRKENDFVLGPTHEEAMLNVVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+ LKFRDE RPRFG++R REF+MKDAYSF    E     +  M  +
Sbjct: 121 KITSYKQLPLNLYQVGLKFRDEARPRFGLLRCREFVMKDAYSFHKDEEDLTREFENMQGT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  RLGL    + A+SG IGG  S EF+VLA  GE  +       D+    E     
Sbjct: 181 YSKILKRLGLDFRVVEADSGAIGGSGSKEFMVLAQNGEDDILLCSHC-DYAANIEAA--- 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                    E+  A +A+     + K    L           E   I  F T  ++   A
Sbjct: 237 KRAKKTCEKERPEANFASKFHTPDVKTIKGL----------AEFFKIDSFYTIKAVVKKA 286

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++       +   G   +   +   A                       +  I   +
Sbjct: 287 LYEDEARLVAFFVRGCDDLQETKAQNACKALELVDADEEELKEAGLKPGFIGFINLKN 344



 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 6/232 (2%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---PYAATSDVHNEKLFDSLP 272
            G   +     ++D  +  E         ++                 D+   K  D   
Sbjct: 337 IGFINLKNVDFYIDNELKDEKQMIMGANEIDYHFVGIDVVNLNEERFKDLVEVKEGDCCA 396

Query: 273 EN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +   K   ++GIEVGHIF  GTKYS  M ATF   +GK     MG YG+G  R+VA  +E
Sbjct: 397 KCGAKLTKSKGIEVGHIFKLGTKYSAAMQATFLDENGKAKPFVMGCYGMGVSRLVAVAVE 456

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +S D +GI+W ++++PFK+ +I     D+   +    +Y  L K+G DV  DD  E+ G 
Sbjct: 457 ASFDERGIVWQEALSPFKLVIILSNIKDEKALNLGISLYEDLRKLGIDVLLDDRNERYGV 516

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +    +L+GF   +I+G K + ++++E+  R    +  +  +  +       
Sbjct: 517 KMNDFELMGFNYALIIG-KGLENNELELVKRKDLGKIKLKADTALTELKKVL 567


>gi|164658475|ref|XP_001730363.1| hypothetical protein MGL_2745 [Malassezia globosa CBS 7966]
 gi|159104258|gb|EDP43149.1| hypothetical protein MGL_2745 [Malassezia globosa CBS 7966]
          Length = 509

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 131/479 (27%), Positives = 204/479 (42%), Gaps = 69/479 (14%)

Query: 2   RRSKYFLPILQENPRDA-----EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAI 56
           R S+ ++P       DA      + S + +LR G I Q + G Y++LP+G + L  + AI
Sbjct: 24  RLSRLYVPT---VSADALGSLDTLESVRRLLRGGYIRQSASGTYTYLPIGLRMLKKLTAI 80

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           I +E ++  A ++ +P L S  LW ++GR+++ G E+ RL DR    MI  PTHEE +T 
Sbjct: 81  IEDEMHQISASQLELPQLLSPALWHKTGRFEAMGSELFRLKDRRGNDMILAPTHEEEITK 140

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +    I S ++LP   +QI  KFRDE RPR G++R++EFLMKD YSFD++ E ++ +Y  
Sbjct: 141 LVGMEIDSAKSLPVRVFQIGRKFRDEPRPRAGLLRTKEFLMKDMYSFDVSVEDARITYED 200

Query: 177 MFVSYLRIFHRLG---------LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +  +Y RIF R+             +   A+SG +GG LSHEF V    GE  +      
Sbjct: 201 VLCAYERIFQRVFCWDQARSSETTWMRATADSGTMGGKLSHEFHVPDPAGEDTLLSCDQC 260

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK----LFDSLPENKRVSARGIE 283
                   N +    +   +  E+    +     V N         S         + IE
Sbjct: 261 SYTS----NVECAKSLGRGTKQEEQGHQHGRDETVTNAARAGDRCASCTHGTLREHKAIE 316

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYV-----QMGSYGIGAMRVVAAVIESSHDGKGI 338
           VGH F  GT+YS  +                   QMG YGIG  RV+ A+ + +      
Sbjct: 317 VGHTFLLGTRYSEALGYHVVPRHADPKRPERVPLQMGCYGIGITRVLGALAQRAAREFDA 376

Query: 339 IW--------------------PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC- 377
                                              +        D   ++  +L   G  
Sbjct: 377 WHAATAQTSSMPLQRRRPQRVGFFWPCEIAPFRALVLPSTPQHMDIAMRLCTQL-DGGLA 435

Query: 378 ----------------DVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                           DV  DD     +GS+   +DL+G+P+ +I+G  +    +VE++
Sbjct: 436 VTWADGMQELLHVPNEDVALDDRTHQSLGSRLFDSDLMGYPIVLILGKHYDQTGEVEVR 494


>gi|24380149|ref|NP_722104.1| prolyl-tRNA synthetase [Streptococcus mutans UA159]
 gi|81845206|sp|Q8DSJ9|SYP_STRMU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|24378150|gb|AAN59410.1|AE015006_3 putative prolyl-tRNA synthetase [Streptococcus mutans UA159]
          Length = 616

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 108/295 (36%), Positives = 159/295 (53%), Gaps = 14/295 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P DA++ SH LM+R G + Q S GIYS+LPL  + ++ +  I+REE
Sbjct: 1   MKQSNMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYSYLPLAHRVIEKIKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY +YG+++ +L +R+    I GPTHEE  T++ R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYGTYGEDLYKLKNRDQSDFILGPTHEETFTNLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHADYDSLDATYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGETQVFCSKDFMDFPIPS 234
           Y  IF R+GL    +  + G +GG  S EF+ +       +             + P   
Sbjct: 181 YEAIFTRVGLDFKAIIGDGGAMGGKDSQEFMAVTPDRTDLEHWLVLDKAIGSIEEIPADV 240

Query: 235 ENTDFDDIISLNSIVEQWTAP-----YAATSDVHNEKLFDSLPENKRVSARGIEV 284
                 ++ S     E   A      YAA  ++   +     P NK VS   I+ 
Sbjct: 241 LKEIKQELSSWLISGEDTIAYSSESDYAANLEMATSEYK---PNNKVVSHEDIQR 292



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 16/204 (7%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             AA  D+      ++ P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FEAAYVDIREVCEGEASPDGRGVLKFARGIEIGHIFKLGTRYSESMGANILDENGRSIPI 473

Query: 313 QMGSYGIGAMRVVAAVIES-------------SHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MGSYGIG  R+++AVIE                   G+ +P ++APF + LI +   D+
Sbjct: 474 IMGSYGIGVSRILSAVIEQNARIFVNKTPKGAYRFSWGVNFPKTLAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V +    K+   L      V  D+  E+IGS+F+ +DL+G P++V VG K  SD  VE+K
Sbjct: 534 VSQQLTAKVEESLVDAHYSVLTDNRNERIGSKFSDSDLIGLPIRVTVGKK-ASDGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            + TG   +++ E ++   S    
Sbjct: 593 IKSTGDTIEVNAENLLETLSILID 616


>gi|315930573|gb|EFV09608.1| Proline-tRNA ligase [Campylobacter jejuni subsp. jejuni 305]
          Length = 220

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 101/220 (45%), Positives = 142/220 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +K++ P L+E P+DA + SH  + R G + Q   G+Y++LPLG++ LD +  I++EE
Sbjct: 1   MRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFLPLGKRVLDKIKNIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA E+++  +  A LW ESGRY+ +GKE+LR  DR +   + GPTHEE M  + ++
Sbjct: 61  MDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKENEFVLGPTHEEAMLSLVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF    E     +  M+ +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHANEEDLGREFELMYKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           Y +I  R+GL    + A+SG IGG  S EF+VLA  GE  
Sbjct: 181 YSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDD 220


>gi|148238958|ref|YP_001224345.1| prolyl-tRNA synthetase [Synechococcus sp. WH 7803]
 gi|166980165|sp|A5GJD3|SYP_SYNPW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|147847497|emb|CAK23048.1| Prolyl-tRNA synthetase [Synechococcus sp. WH 7803]
          Length = 594

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 113/254 (44%), Positives = 157/254 (61%), Gaps = 3/254 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P DAEI SH+L++R G I +   GIY++LP+  K L  +NAI+R E
Sbjct: 1   MRVSRLMLVTLRDVPADAEIPSHQLLVRGGYIRRIGSGIYAYLPMMWKVLRKINAIVRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  GA+E  +P LQ ADLW  SGR+  Y +    M  L DR ++ +  GPTHEEV+T++
Sbjct: 61  LNHLGALETLLPQLQPADLWERSGRWQGYTEGEGIMFHLEDRQNRQLGLGPTHEEVITEL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SYR LP T YQIQ KFRDE+RPRFG+MR REF+MKDAYSF    E  +++Y  M
Sbjct: 121 AGDLLRSYRQLPVTLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHANQEDLENTYQAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y RIF R GL+++ + A+SG IGG  S E++V A  GE  +  S D +      + T
Sbjct: 181 ATAYARIFERCGLEAVAVDADSGAIGGAASQEYMVTAAAGEDLILTSSDGLYAANQEKAT 240

Query: 238 DFDDIISLNSIVEQ 251
               +    +  E+
Sbjct: 241 SRPPVALPLAAGEE 254



 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/213 (30%), Positives = 95/213 (44%), Gaps = 5/213 (2%)

Query: 237 TDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSL---PENKRVSARGIEVGHIFYFGT 292
               +    +     W A P    +D+   +  D     P       RGIEVGHIF  G 
Sbjct: 382 VCGANSKDQHCWGRTWDAMPAQIKADLRTARAGDQCVHDPSQTLSECRGIEVGHIFQLGR 441

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KYS  + A F  + G+   + MG YGIG  R+  A +E  HD  GI WP  +APF++ ++
Sbjct: 442 KYSEALDARFTNSAGQQEALLMGCYGIGISRLAQAAVEQHHDEAGISWPLGIAPFQVIVV 501

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
             K  D       E++Y      G D   DD  E+ G +F  ADL+G P +++VG +   
Sbjct: 502 IAKIQDPTQVALAEELYQSFLDAGIDALLDDRDERAGVKFKDADLIGIPWRIVVG-RDAG 560

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + KVE+  R T     +  +E         S +
Sbjct: 561 EGKVEVVERSTRCSTSVPHQEAFQQVKDSISTH 593


>gi|325527705|gb|EGD04994.1| threonyl-tRNA synthetase [Burkholderia sp. TJI49]
          Length = 406

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 80/426 (18%), Positives = 143/426 (33%), Gaps = 41/426 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  +  +KL L        S G   W P G   L  V   IR    + G  E+  P + +
Sbjct: 5   DHRVLGNKLELF--HQQDESPGAIFWHPRGMVLLRVVEDYIRARMRQAGFSEVRTPQIIA 62

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             LW +SG ++ +G+ M  L   +D+     P        IFR  ++SYR+LP  + +  
Sbjct: 63  RSLWEQSGHWEKFGRGMFSLQ-SDDRPYCLKPMSCPCHVQIFRKGVRSYRDLPVRYSEFG 121

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R E      G+MR+R F   DA+     P+  +    +  +    I+   G     +
Sbjct: 122 AVHRAEPSGALHGLMRARAFTQDDAHVLCR-PDQVEAEVARFCMLLKSIYADFGFGGFDV 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              + P                       +   D       +         S+     A 
Sbjct: 181 ALSTRPAVR-----------------AGDEAVWDRAEAMLASAARAAGLDFSVRAGEGAF 223

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQM 314
           Y    + H   L D      +     ++       G        A +   DG     V +
Sbjct: 224 YGPKLEFH---LLDRQGRQWQCGTIQLDFVLPERLG--------AAYVAEDGARAVPVML 272

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               +G++     V+   ++G    W         ++     HD+  R   +++ +    
Sbjct: 273 HHAVLGSLERFIGVLLEHYEGWLPTWLAPDQIVVANI----GHDE--RAFADRVASAFEA 326

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +GC V  D   E++  +   A  L  P+  + G K      V ++ R  G  + +SL + 
Sbjct: 327 IGCRVLRDFRAERLPRKIFDARALAAPIVAVTGRKEALAGAVSLRMR-NGESQVLSLADA 385

Query: 435 INYASH 440
           + +   
Sbjct: 386 LAHLKQ 391


>gi|168485970|ref|ZP_02710478.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|183570860|gb|EDT91388.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
          Length = 617

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLTPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITSARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  IV    
Sbjct: 241 QEEIKAELLKWIVSGED 257



 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + V+        + +
Sbjct: 593 IKATGDTIEVHADNVLETL--EILSKK 617


>gi|85093975|ref|XP_959801.1| threonyl-tRNA synthetase [Neurospora crassa OR74A]
 gi|28921255|gb|EAA30565.1| threonyl-tRNA synthetase [Neurospora crassa OR74A]
          Length = 788

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 82/479 (17%), Positives = 154/479 (32%), Gaps = 70/479 (14%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD  +   +  L      + S G   WLP G +  + +   I+EE  + G  E+
Sbjct: 314 LEEAAKRDHRLIGKQQELF--YFEECSPGSAMWLPHGMRINNAIMEYIKEEYWKRGYDEV 371

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + +  LW +SG    Y  +M  L D + +     P +      +FR   +S++ LP
Sbjct: 372 MTPNMFNVALWEQSGHLAHYKDDMFIL-DVDKEQFGLKPMNCPAHAMMFRHRDRSHKELP 430

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                  +  R+E      G+ R R F   DA+ F    +  K     +F      +  L
Sbjct: 431 LRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCR-EDQIKAEVADLFDFMKSFYGML 489

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           GL    ++  + P       E    A+    +             + N           +
Sbjct: 490 GLTFK-LKLSTRPEKYMGEIETWDRAEARLKE-------------ALNEFVAATGGTWEL 535

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-- 306
            E   A Y    D+    + D L    + +   ++      F  +Y    +   +  D  
Sbjct: 536 NEGDGAFYGPKIDI---AVLDCLNRPWQCATIQLDFQQPINFSLEYMTADAQAKQDEDKA 592

Query: 307 ------------------------------------GKDHYVQMGSYGIGAMRVVAAVIE 330
                                               G    V +     G++    A++ 
Sbjct: 593 ASKAAKPEAPKEEEEAPKEGEEKKKKALLVKKPLTAGCARPVMIHRAMAGSIERFTAILA 652

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              +     WP  ++P ++ +I +        D  +++   L K    V  D  G  +  
Sbjct: 653 ---EHFAGKWPFWMSPRQVMVIPVGMG---FLDYAKEVALTLKKEKIHVDVDSSGNTLQK 706

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNN 445
           +   A L  +    +VG    ++ KV I++R     +      SLEE +       ++ 
Sbjct: 707 KIRSAQLAQYNFIFVVGDDEKTNRKVNIRYRDDTSTQARDVPYSLEEAVEKLRALKADR 765


>gi|306825925|ref|ZP_07459263.1| proline--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304431857|gb|EFM34835.1| proline--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 617

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 105/257 (40%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF         +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYNSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  +V    
Sbjct: 241 QEEIKAELLKWMVSGED 257



 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   G+ +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVIEQHARLFVNKTPKGEYRYAWGVNFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L + G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMEAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + ++        + +
Sbjct: 593 IKATGDTIEVHADNLLETL--EILSKK 617


>gi|302191444|ref|ZP_07267698.1| prolyl-tRNA synthetase [Lactobacillus iners AB-1]
          Length = 566

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 109/273 (39%), Positives = 144/273 (52%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 1   MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 61  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 121 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++              D
Sbjct: 181 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNETGTYSANLEMARSID 240

Query: 241 DI---ISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                      +E+ + P  AT +  +E L   
Sbjct: 241 TFSPEKEELKPLEKVSTPDCATIEQLSEFLHVP 273



 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 95/193 (49%), Gaps = 2/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     N    D +          IEVGHIF  GT Y+  M+A F   +GK  
Sbjct: 376 DFKVNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQ 435

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MGSYGIG  R+++A++E      GI WP  VAPF+I +I +   +       +K+  
Sbjct: 436 PIIMGSYGIGVTRMLSAIVEQHSTDNGIFWPKEVAPFEIHIIQMNMKNDEQTVVSKKLEE 495

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             S    DV +DD  E+ G +F  ADL+G P+++IVG + VS+  VE+K        +MS
Sbjct: 496 IFSDK-YDVLYDDRNERPGVKFNDADLIGAPIRIIVGRR-VSEQIVEVKKSTEQESVEMS 553

Query: 431 LEEVINYASHRFS 443
           L+ +  Y S    
Sbjct: 554 LDSLTEYISKELR 566


>gi|293364306|ref|ZP_06611032.1| proline--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307702728|ref|ZP_07639680.1| prolyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
 gi|291317152|gb|EFE57579.1| proline--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307623844|gb|EFO02829.1| prolyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
          Length = 617

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 105/257 (40%), Positives = 148/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  +V    
Sbjct: 241 QEEIKAELLKWMVSGED 257



 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   G+ +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGVNFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E+IG +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQTLTEKLEASLMGAGYEVLTDDRNERIGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++ ++ ++        + +
Sbjct: 593 IKATGDTIEVHVDNLLETL--EILSKK 617


>gi|126642843|ref|YP_001085827.1| prolyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
          Length = 546

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 115/228 (50%), Positives = 156/228 (68%), Gaps = 1/228 (0%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP+G + L  V+AI+REE NR+GA+E+ +P  Q A LW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREEMNRSGAMEVFMPVTQPASLWEESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           Y+ YG E+LR  DR+D   + GPTHEEV+TD+ R+ +KSY+ LP  FYQIQ KFRDE+RP
Sbjct: 61  YEQYGPELLRFKDRHDNPFVLGPTHEEVITDLARNELKSYKQLPVNFYQIQTKFRDEIRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREF+MKDAYSF  T E  + +Y+ M+ +Y RIF RLGL   P++A++G IGG 
Sbjct: 121 RFGVMRSREFIMKDAYSFHATQESLQETYDVMYDTYSRIFTRLGLDFRPVQADTGSIGGS 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            SHEF VLA +GE  +       D+    E  +   +    +  +++ 
Sbjct: 181 ASHEFHVLAASGEDDIAF-STESDYAANVEMAEAVLVGERAAPTQEFK 227



 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 73/192 (38%), Positives = 104/192 (54%), Gaps = 3/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +  A      D+ N    D  P+ K      RGIEVGHIF  GTKYS  +     G DGK
Sbjct: 354 ERDAQITEVFDLRNVVEGDPSPDGKGTLQIKRGIEVGHIFQLGTKYSEALGCKVLGEDGK 413

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
              V MG YGIG  RVVAA IE ++D KGIIWP ++APF+I+++ + A       +A E 
Sbjct: 414 PFTVTMGCYGIGVTRVVAAAIEQNYDDKGIIWPQAIAPFEIAIVPMNAHKSPRTLEAAEA 473

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA L   G DV  DD  E+ G +F+  +L+G P ++++G K +     E K R      
Sbjct: 474 LYAELQAQGFDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDAEAS 533

Query: 428 DMSLEEVINYAS 439
           +++ EE++   +
Sbjct: 534 NLTKEELLAKLA 545


>gi|187736219|ref|YP_001878331.1| threonyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426271|gb|ACD05550.1| threonyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
          Length = 630

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/463 (16%), Positives = 150/463 (32%), Gaps = 59/463 (12%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      +L L   +     +G+  W P G     ++   I EE ++ G  +
Sbjct: 195 RLEEARRRDHRKLGRELGLF-CIDESVGQGLILWKPKGALIRRSLQDFITEELDKLGYSQ 253

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------------------------M 104
           +  P +   DL+  SG +  Y +         D                           
Sbjct: 254 VYTPNIGKLDLYRTSGHFPYYQESQYAPIPERDAMEKLSQEGASCAELFNGLATGTIEGY 313

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSF 163
           +  P +      I+ +   SYR+LP    +    +R E      G+ R R F   DA+ F
Sbjct: 314 MLKPMNCPHHIKIYANDAHSYRDLPVRLAEFGTVYRWEQSGELGGMTRVRGFTQDDAHIF 373

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
               + +     +       IF  LG+    +R                + D    +   
Sbjct: 374 CTPDQLAGE-IRQCLGIVKTIFGTLGMTDYRVRLS--------------MRDPESDKYVG 418

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           S +  D    +     + + +  S      A Y    D     + D++    ++    ++
Sbjct: 419 SPENWDKAEQALREAAEWLGADYSEEAGEAAFYGPKIDFI---VRDAIGREWQLGTVQVD 475

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
                             + GAD K H    +     G+M     ++    +GK   W  
Sbjct: 476 YNLP--------ERFDLHYTGADNKPHRPVMVHRAPFGSMERFTGLLIEHFEGKFPTW-- 525

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            ++P ++ ++ I        D        L+  G  V  D+  ++IG++   A L   P 
Sbjct: 526 -LSPEQVRVLPISDK---VTDVAAAHRTALAARGVRVTVDETPDKIGAKIRNARLDRVPY 581

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +++G +   D  V ++HR  G    M  E+  +  +   +  
Sbjct: 582 MLVLGQREAEDGTVSVRHRDKGDLGAMPFEQFADLVAREIAER 624


>gi|50550793|ref|XP_502869.1| YALI0D15620p [Yarrowia lipolytica]
 gi|49648737|emb|CAG81057.1| YALI0D15620p [Yarrowia lipolytica]
          Length = 445

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 142/456 (31%), Positives = 214/456 (46%), Gaps = 50/456 (10%)

Query: 2   RRSKYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           R S+     L++  P      +  L+  TG +   S G+ + LPLG +    +  IIR E
Sbjct: 4   RLSRLTTRRLKDVTPS---TTASDLLAVTGYVSYPSSGLANLLPLGLRVQRKIENIIRSE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+S+      DLW ++GR ++   E+ R+ D ++   I  PTHEE +T++   
Sbjct: 61  LDSIGCAEVSLSNFSDPDLWRKTGRINN--GELFRVNDGSEDPPIIAPTHEEEITNLIAQ 118

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I S ++LP  +YQI  K+R+E RPR G++R +EF MKD YSFD+    +  SY+ +  +
Sbjct: 119 KISSPKDLPILWYQIGKKYRNEARPRGGLLRGKEFTMKDLYSFDVDEPRALESYDLVRKA 178

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDF 239
           Y +IF +LG+    + A+SG IGG  SHE+ V+  +GE  +  CS       I       
Sbjct: 179 YDQIFGKLGVPVKSVAADSGAIGGSHSHEYHVIDASGEDTLVTCSSCDYSANIEVAERAA 238

Query: 240 DDIISLNSIVEQWTAPY------------------------------AATSDVHNEKLFD 269
            D  ++ + V      +                                + ++   K  D
Sbjct: 239 GDSETICTEVNGVLVTHESSHAVNPRLVDRALSSYGHDAYKISMLRDGVSHNLTTPKEGD 298

Query: 270 SLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           S P        +  IEVGH FY GTKYS  +S  FK ++ K     MG YGIG  R+VAA
Sbjct: 299 SCPNCTSSLKFSNAIEVGHTFYLGTKYSKSLSCDFKNSENKLTPAFMGCYGIGITRLVAA 358

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDM-G 385
           + E S D  G+ WP +VAP++  +I      +    D   ++ A L     D   DD   
Sbjct: 359 IAEVSRDQHGLKWPSNVAPYETVVILGGGATESTLLDKASELGALLQ----DAVIDDRPK 414

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             IG +   A L+GFP  V+V      D  +E+ HR
Sbjct: 415 RSIGWKINEAKLMGFPQVVVV----KKDG-IEVIHR 445


>gi|282898730|ref|ZP_06306717.1| Threonyl-tRNA synthetase, class IIa [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196257|gb|EFA71167.1| Threonyl-tRNA synthetase, class IIa [Cylindrospermopsis raciborskii
           CS-505]
          Length = 610

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 70/442 (15%), Positives = 150/442 (33%), Gaps = 39/442 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 198 EEALRRDHRKIGKELGLFI-FSDPVGPGLPLWTPKGTLLRSILEDFLKKEQLKRGYLPVV 256

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA------MIYGPTHEEVMTDIFRSHIKS 124
            P +   DL+  SG +  Y ++M  +   N+++       +  P +      I++S ++S
Sbjct: 257 TPHIARVDLFKTSGHWQKYKEDMFPMMAENEESKALDQGFVLKPMNCPFHIQIYKSELRS 316

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR LP    +    +R E     G +        D     +TPE     +  +    L +
Sbjct: 317 YRELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDDSHLFVTPEQLDEEFLNVVDLILTV 376

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F RL LK+   R                  D    +     +  D    +       +  
Sbjct: 377 FRRLQLKNFKARLS--------------FRDPTSDKYIGGDEVWDKAEGAIRRAVQQLGM 422

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +       A Y    D       D L    ++    ++                  +  
Sbjct: 423 DHFEGIGEAAFYGPKLDFI---FSDVLEREWQLGTVQVDYNLP--------ERFDLEYVA 471

Query: 305 ADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG       +     G++  +  ++    +     +P  +AP +I L+ +    +   +
Sbjct: 472 EDGSRKRPVMIHRAPFGSLERLIGILI---EEYAGDFPLWLAPIQIRLLPVG---EQQIE 525

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++  +++++G     D  G+++       +    P+  +VG+K V  + + I+ R +
Sbjct: 526 FTKEVAGKMTELGIRAQADLSGDRLAKLIRNGEKDKIPVMAVVGAKEVESNSLSIRTRAS 585

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G    + +E+V+        N 
Sbjct: 586 GELGVIPVEKVVEKMQDSIINY 607


>gi|225350874|ref|ZP_03741897.1| hypothetical protein BIFPSEUDO_02448 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158330|gb|EEG71572.1| hypothetical protein BIFPSEUDO_02448 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 611

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 119/427 (27%), Positives = 180/427 (42%), Gaps = 20/427 (4%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE 
Sbjct: 6   RMSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLNVLNKIENIIREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
               A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +  
Sbjct: 66  ASIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDL 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +Y
Sbjct: 126 YSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF+RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +  T   +
Sbjct: 186 ERIFNRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEALTTPEPE 245

Query: 242 II--SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV-------GHIFYFGT 292
            I  S     E+   P A T D   E    + P +   +    ++               
Sbjct: 246 AIDFSNTPAAEKRPTPNAETIDQMVEFANANHPRSDGRAWEASDILKNVVIAVMHPQDDE 305

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                      G  G                 +  A  E       ++            
Sbjct: 306 HDEPWRELVVVGVPGDRTVDMKRLEAQFTPAEIEEATDEDLKKHPELVKGYIGPMAFGPQ 365

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ-VIVGSKF 410
                  +   +  E +             D    +  + F  AD  G     ++ G  F
Sbjct: 366 ARGGEKAENANETGEAL---------RYLIDAHIARGSAWFTGADEAGVDYYDLVYGRDF 416

Query: 411 VSDSKVE 417
            +D  VE
Sbjct: 417 EADGVVE 423



 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 2/173 (1%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   RG+E+G +F  G KYS  +       +GK   V MGSYGIG  RV+A + E+
Sbjct: 436 GSGPLSFERGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMGSYGIGVSRVMACIAET 495

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGS 390
            HD KG+ W  ++       +     D    +A E++ A L   G +V +DD  +   G 
Sbjct: 496 HHDEKGLAW-PAIIAPAQVHVVATGKDAAAFEAAEQLIADLEAKGIEVIFDDRKKVSPGV 554

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +F  A+L+G PL  + G   V++  +E++ R     E + + +     + R +
Sbjct: 555 KFKDAELIGVPLIAVAGRDTVNNGTIEVRDRNGENAEAVPVADAARVIADRVA 607


>gi|66821029|ref|XP_644046.1| threonyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|75016778|sp|Q8MP20|SYTC2_DICDI RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21240667|gb|AAM44378.1| hypothetical protein [Dictyostelium discoideum]
 gi|60472212|gb|EAL70165.1| threonyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 698

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/435 (15%), Positives = 139/435 (31%), Gaps = 35/435 (8%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD  +      L     H  S G   +LP G K  + +   +R E  + G  E+  P + 
Sbjct: 281 RDHRVIGKDQELF--FFHPFSPGSCFFLPHGTKIYNKLLQFLRLEYRKRGYQEVISPNIY 338

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           +  LW  SG +D+Y   M    + +       P +      ++    +SY+ LP      
Sbjct: 339 NQKLWETSGHWDNYKDNMFSF-ECDHTQYSLKPMNCPGHCLMYAHRARSYKELPMRIADF 397

Query: 136 QLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
            +  R+E      G+ R R F   DA+ F  TP+  +    +       ++         
Sbjct: 398 GVLHRNETHGSLSGLTRVRRFQQDDAHIFC-TPDMIREEIKQCLDFMKYVYTIFNFTF-H 455

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +   + P            A+T  +QV                         +I     A
Sbjct: 456 LELSTRPDSYLGELSVWEKAETSLSQVLTEFC----------------GDKWTINHGDGA 499

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS-----LPMSATFKGADGKD 309
            Y    D+H   L D+  +N + +   ++      F  +YS        +         +
Sbjct: 500 FYGPKIDIH---LKDANGKNHQCATIQLDFQLPIRFNLEYSGGLNNNNNNNNNNEEINDN 556

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAHDQVCRDACEKI 368
           +     +  +   R +   +E                        +           ++I
Sbjct: 557 NNNNSLNRPVMIHRALFGSVERMMAILMEHTAGKWPFWLSPRQCIVIPVSNKFNQFAQEI 616

Query: 369 YARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---TG 424
            ++++  G DV  D    + +  +   A +  +   ++VG + +  + + ++ R      
Sbjct: 617 QSKINLAGYDVDVDLNDSKLLSKKIREATVSQYNYIIVVGQEEIDTNILNVRKRDLPEDN 676

Query: 425 IREDMSLEEVINYAS 439
            +  +SL ++ +   
Sbjct: 677 KQVKLSLNDLFSEFK 691


>gi|154148423|ref|YP_001406459.1| prolyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
 gi|166980113|sp|A7I1R8|SYP_CAMHC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|153804432|gb|ABS51439.1| prolyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
          Length = 569

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 101/260 (38%), Positives = 150/260 (57%), Gaps = 1/260 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK+F P L+E P+DA + SH  ++R G I Q   G+Y++LPLG+  ++ + A+I++E
Sbjct: 1   MKFSKFFAPTLKEAPKDAILPSHVFLIRAGFIEQLGSGLYNFLPLGEMVIEKIKAVIKDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++TGA++++   +  ++ W ESGRY+ YGKE+LR+ DR +   +  PT+EE    +  +
Sbjct: 61  MDKTGALQVNFSFVTPSEFWQESGRYNVYGKELLRIKDRKENGFVLSPTNEESSVKMIAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI  KFRDE RPRFG++R REF+MKD YSF    E  K  ++ M  +
Sbjct: 121 KITSYKQLPIHIYQINTKFRDEARPRFGLLRGREFIMKDGYSFHANMEDLKREFDVMEKT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDF 239
           Y  IF RLGL    + A+SG IGG  S EF+VLA  GE  +  C        I +     
Sbjct: 181 YTNIFSRLGLNFRAVEADSGAIGGSGSKEFMVLAQNGEDDILVCESCKYAANIEAAVRVK 240

Query: 240 DDIISLNSIVEQWTAPYAAT 259
            +        E+    +   
Sbjct: 241 REAPCAAPETEKMQKFHTPN 260



 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTA---PYAATSDVHNEKLFDSLPEN--KRVSA 279
             ++D  + +E          +  +  +           D+   +  D  P+   K    
Sbjct: 347 NFYIDKELKNERNLIVGANEKDYHIVGFAVTNFKDERFVDLSQVRAGDCCPKCGAKLDIK 406

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A +IE+ HD KG I
Sbjct: 407 KGIEVGHIFQLGQKYSKAMNAIFLDENGKAVPFFMGCYGIGVSRLLAVMIEAGHDEKGCI 466

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W    APFK+ +I   + D+   +   ++Y +    G     DD  E+ G +    +L+G
Sbjct: 467 WNTQTAPFKLEIIISNSKDEDASNFAIQLYEKCKNAGISTLLDDRKERFGVKMNDFELIG 526

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  V+VG K + D  VE+  R    ++ +S  E+        
Sbjct: 527 FPFAVLVG-KGLKDGNVELIERKGLNKKIVSSGEIFETLKGIL 568


>gi|296228691|ref|XP_002759919.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial isoform 1
           [Callithrix jacchus]
          Length = 718

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 145/457 (31%), Gaps = 57/457 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
             +   +D      +  L     H+ S G   +LP G +  + + A IR E  R G  E+
Sbjct: 294 REKAGLQDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFFEV 351

Query: 70  SVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKAMIYGPTHEEV 113
             PTL S  LW +SG ++ Y ++M                          +   P +   
Sbjct: 352 KTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPASSQSDHSTRHTTDTLALKPMNCPA 411

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              +F    +S+R LP          R E      G+ R R F   DA+ F  T +    
Sbjct: 412 HCLMFAHRPRSWRELPLRLADFGALHRAEASGGLCGLTRLRCFQQDDAHIFCTTDQLEAE 471

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                      ++  LG         + P G                         D   
Sbjct: 472 -IQSCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------LGDPCLWDQAE 512

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                   +      +     A Y    DVH   L D+L    +     ++    F    
Sbjct: 513 QVLQQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPL 565

Query: 293 KYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           ++       +KG  G  +  V +    +G++  +  V+    +     WP  ++PF++ +
Sbjct: 566 RFD----LQYKGQAGALERPVLIHRAVLGSVERLLGVLA---ESCRGKWPLWLSPFQVVV 618

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           I +    +   +   +    L   G     D D    +  +   A L  +  Q +VG K 
Sbjct: 619 IPVGTEQE---EYARETQQSLQAAGLVCDLDADSRLTLSRRIRRAQLAHYNFQFVVGQKE 675

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            S S V I+ R   +  + SL E +       +   P
Sbjct: 676 QSKSTVNIRTRDNRLLGEWSLPEAVQRLVVLQNTRVP 712


>gi|15827147|ref|NP_301410.1| threonyl-tRNA synthetase [Mycobacterium leprae TN]
 gi|221229625|ref|YP_002503041.1| threonyl-tRNA synthetase [Mycobacterium leprae Br4923]
 gi|2501058|sp|O07151|SYT_MYCLE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783529|sp|B8ZUG9|SYT_MYCLB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2193902|emb|CAB09620.1| ThrS [Mycobacterium leprae]
 gi|13092695|emb|CAC29964.1| threonyl-tRNA synthetase [Mycobacterium leprae]
 gi|219932732|emb|CAR70549.1| threonyl-tRNA synthetase [Mycobacterium leprae Br4923]
          Length = 702

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 64/443 (14%), Positives = 142/443 (32%), Gaps = 49/443 (11%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 272 ITEAQRRDHRKLGIELDLFS-FPDEIGSGLAIFHPKGSIVRREMEEYSRRKHIEAGYQFV 330

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y + +                 +  +     P +  + T I
Sbjct: 331 NTPHITKAQLFHTSGHLDWYAEGIFPPMHLDAEHNDDGTVRKPGQDYYLKPMNCPMHTLI 390

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F S  +SYR LP   ++    +R E      G+ R+R F M D++ F    +        
Sbjct: 391 FSSRGRSYRELPLRLFEFGTIYRYEKSGVVHGLTRARGFTMDDSHIFCTREQLHCEL-AS 449

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +    GL+   +   +                    +   S++  +    +  
Sbjct: 450 LLRFVLDLLGDYGLEDFYLELST----------------KDPEKFVGSEEIWEEATAALA 493

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              ++            A Y       + ++ D+L  + ++S   ++    F F  +++ 
Sbjct: 494 EVAENSTLPLVPDPGGAAFYGPKI---SVQVRDALGRSWQMSTIQVD----FNFPERFA- 545

Query: 297 PMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +  ADG       +     G++     ++    +     +P  +AP ++  I + 
Sbjct: 546 ---LEYTSADGTRQRPVMIHRALFGSIERFFGILT---EHYAGAFPAWLAPIQVVGIPVT 599

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     E++ A+L   G     D   +++  +         P  ++ G + V    
Sbjct: 600 G---EHVSYLEEVAAQLKSCGVRTEVDVSDDRMAKKIVRHTNQKVPFMLLAGDRDVRTGS 656

Query: 416 VEIKHRLTGIREDMSLEEVINYA 438
           V  +         ++ +  +   
Sbjct: 657 VSFRFGDRTQINGVARDSAVEAI 679


>gi|313904501|ref|ZP_07837877.1| threonyl-tRNA synthetase [Eubacterium cellulosolvens 6]
 gi|313470643|gb|EFR65969.1| threonyl-tRNA synthetase [Eubacterium cellulosolvens 6]
          Length = 591

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 141/439 (32%), Gaps = 45/439 (10%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F   L+E   RD +    +  L   M  + + G+  WLP G K  +++ +  R      G
Sbjct: 173 FKKFLREAAERDHKKLGPQQELF--MFDETAPGMPYWLPRGWKLFNSLLSFWRGIHEEHG 230

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA---MIYGPTHEEVMTDIFRSHI 122
             E+S P L ++ LW  SG +  Y   M  +    +         P +      +++S +
Sbjct: 231 YQEISGPILSNSKLWQTSGHWGHYKDNMFIIPGEKEDESDYYAAKPMNCPNAILVYKSRL 290

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR+LPF   Q+    R E      G+ R + F   DA+      + +           
Sbjct: 291 RSYRDLPFRVAQVDNIHRKEKSGELNGLFRVQMFRQDDAHILVTEDQIADE--------I 342

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I               G        +F+                 D    S     +D
Sbjct: 343 KDIMSIATQIYGTFGLSYGAELSTRPDDFM-----------GDIAVWDKAEASLKEILND 391

Query: 242 I--ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +       + E   A Y    D+   K+ D+L    ++    ++    F     + +  +
Sbjct: 392 VYGEGNYEVNEGDGAFYGPKIDL---KMKDALGREWQMGTIQLD----FQLPLNFDMKYA 444

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           A  +    K   +   +      R +  +IE+                            
Sbjct: 445 A--QDGTVKQPVMIHRAIFGSLERFIGILIENYKASFPFWLSPYQVGVVPIRT------- 495

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  +K+   L   G  V  D   + +  +         P  ++VG K  S+  V I 
Sbjct: 496 EHNEYAKKVVDALKAAGIRVEVDYADKNMNEKIKAFKTYHDPYIIVVGDKEASEGTVSIT 555

Query: 420 HRLTGIR-EDMSLEEVINY 437
            R    +  D+SLE+++  
Sbjct: 556 VRGQKQQLHDVSLEKLVEM 574


>gi|212716449|ref|ZP_03324577.1| hypothetical protein BIFCAT_01373 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660702|gb|EEB21277.1| hypothetical protein BIFCAT_01373 [Bifidobacterium catenulatum DSM
           16992]
          Length = 611

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 118/427 (27%), Positives = 183/427 (42%), Gaps = 20/427 (4%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE 
Sbjct: 6   RMSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLNVLNKIENIIREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
               A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +  
Sbjct: 66  ASIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDL 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +Y
Sbjct: 126 YSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF+RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +  T   +
Sbjct: 186 ERIFNRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEALTTPEPE 245

Query: 242 IISLNSI--VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE------VGHIFYFGTK 293
            I  ++    E+   P A T D   E    + P +   +    +      +  +      
Sbjct: 246 AIDFSNTPAAEKRPTPNAETIDQMVEFANANHPRSDGRAWEASDILKNVVIAVMHPQDDD 305

Query: 294 YSL-PMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           +          G  G                 +  A  E       ++            
Sbjct: 306 HDEPWRELVVVGVPGDRTVDMKRLEAQFTPAEIEEATDEDLKKHPELVKGYIGPMAFGPQ 365

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ-VIVGSKF 410
                  +   +  E +             D    +  + F  AD  G     ++ G  F
Sbjct: 366 ARGGEKAENANETGEAL---------RYLIDAHIARGSAWFTGADEAGVDYYDLVYGRDF 416

Query: 411 VSDSKVE 417
            +D  VE
Sbjct: 417 EADGVVE 423



 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 2/173 (1%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   RG+E+G +F  G KYS  +       +GK   V MGSYGIG  RV+A + E+
Sbjct: 436 GSGPLSFERGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMGSYGIGVSRVMACIAET 495

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGS 390
            HD KG+ W  ++       +     D    +A E++ A L   G +V +DD  +   G 
Sbjct: 496 HHDEKGLAW-PAIIAPAQVHVVATGKDAAAFEAAERLIAELEAKGIEVIFDDRKKVSPGV 554

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +F  A+L+G PL  + G   V++  +E++ R     E + + +     + R +
Sbjct: 555 KFKDAELIGVPLIAVAGRDTVNNGTIEVRDRNGENAEAVPVADAAQMIAERVA 607


>gi|259501582|ref|ZP_05744484.1| proline-tRNA ligase [Lactobacillus iners DSM 13335]
 gi|259167100|gb|EEW51595.1| proline-tRNA ligase [Lactobacillus iners DSM 13335]
          Length = 581

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 109/273 (39%), Positives = 144/273 (52%), Gaps = 3/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR+S  F+P L+E P DA   SH+LMLR G I Q + G+Y++LPL    L     II EE
Sbjct: 16  MRQSILFIPTLKEVPSDAVAKSHQLMLRGGYIRQVTAGVYAYLPLAYLVLRKAEKIIEEE 75

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM +P    A LW ESGR   YG EM RL DR+ +  + GPTHEE  T+I   
Sbjct: 76  MENINVPEMIMPHFLPATLWEESGRLPKYGPEMFRLKDRHGRESLLGPTHEETFTEIIGK 135

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +IKSY+ +P   YQIQ KFRDE RPRFG++R REF+M D YSF  T E     ++    +
Sbjct: 136 NIKSYKQMPIALYQIQTKFRDENRPRFGLLRGREFVMLDGYSFAATREQLDKQFDDQKHA 195

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R G++  P+ A SG +GG  S EF   A  GE  +  ++              D
Sbjct: 196 YKKIFKRCGVEVYPVIANSGTMGGKNSTEFQAPAAIGEDVIATNETGTYSANLEMARSID 255

Query: 241 DI---ISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                      +E+ + P  AT +  +E L   
Sbjct: 256 TFSPEKEELKPLEKVSTPDCATIEQLSEFLHVP 288



 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 95/193 (49%), Gaps = 2/193 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +     A     N    D +          IEVGHIF  GT Y+  M+A F   +GK  
Sbjct: 391 DFKVNEFADLRTANAGEPDPVDHLPLKFTTSIEVGHIFKLGTYYTNSMNAKFLDQNGKTQ 450

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + MGSYGIG  R+++A++E      GI WP  VAPF+I +I +   +       +K+  
Sbjct: 451 PIIMGSYGIGVTRMLSAIVEQHSTDNGIFWPKEVAPFEIHIIQMNMKNDEQTVVSKKLEE 510

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             S    DV +DD  E+ G +F  ADL+G P+++IVG + VS+  VE+K        +MS
Sbjct: 511 IFSDK-YDVLYDDRNERPGVKFNDADLIGAPIRIIVGRR-VSEQIVEVKKSTEQESVEMS 568

Query: 431 LEEVINYASHRFS 443
           L+ +  Y S    
Sbjct: 569 LDSLTEYISKELR 581


>gi|26553728|ref|NP_757662.1| threonyl-tRNA synthetase [Mycoplasma penetrans HF-2]
 gi|26453735|dbj|BAC44066.1| threonyl-tRNA synthetase [Mycoplasma penetrans HF-2]
          Length = 566

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 59/437 (13%), Positives = 141/437 (32%), Gaps = 33/437 (7%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD       + +     +   +G+  WLP G+     +   +    ++   + +
Sbjct: 161 MEEIKSRDHRKIGQDMEIF-DFSNDIGQGLPIWLPNGEIIKKEIKKFLWSIFSKEKFLFI 219

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P L S +L+++SG ++ Y +      + +++  +  P         F     SY+ LP
Sbjct: 220 DTPILGSKELYIKSGHWEHYKENNFPPMEVDNETFMLRPMTCPHHLTYFNLKPHSYKELP 279

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           +   +     R E      G+ R R   + D +     P+  +    ++      +  R+
Sbjct: 280 YAICEDSKLHRYESSGGLIGLERVRTMELFDCHII-TKPDQIEDVIRQLNNILKIVHKRM 338

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +K   +                      + +                     +      
Sbjct: 339 NIKIDRVDLSLRD-------------PKDKVKYHDDDKMWKSSEKQLRDILKKLNYKAME 385

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +E   A Y    D    ++  +L +   +S   ++    F    ++       +   +  
Sbjct: 386 IEGEAAFYGPKIDF---QVKTNLGKIITISTIQLD----FLLPERFD----VEYIDENNT 434

Query: 309 DHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                +  +G IG      A + S   G    W        + +  I  ++ +  D C+K
Sbjct: 435 KKRPVLIHFGVIGTYERFIATLLSQTKGLLPFWLA-----PVQISIIPVNNNIHLDYCKK 489

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I + L +    V  DD  E++  +   A +   P Q+++G   + ++++  +        
Sbjct: 490 IASELEENNIRVKLDDSNERLAKKIREAQISKIPFQLVIGDNEIKNNEITYRKYSEENST 549

Query: 428 DMSLEEVINYASHRFSN 444
            +   E I++       
Sbjct: 550 TLKFNEFIDFIKKLKKE 566


>gi|330836102|ref|YP_004410743.1| Prolyl-tRNA synthetase [Spirochaeta coccoides DSM 17374]
 gi|329748005|gb|AEC01361.1| Prolyl-tRNA synthetase [Spirochaeta coccoides DSM 17374]
          Length = 586

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 94/262 (35%), Positives = 141/262 (53%), Gaps = 1/262 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F   L+E P  A+   ++L+LR G I Q   GI++ LPLG +++  + +IIR+E
Sbjct: 1   MRMSALFSKTLREAPSGADAKGYELLLRAGFIRQLGAGIFTMLPLGYRSVKKIESIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+ +P +  AD+W  +GRY S  KEM R  DR  + M+   THEE +TD+ + 
Sbjct: 61  MDAIGGQEILMPVVNPADIWKSTGRYYSIDKEMSRFQDRVGRDMVLAMTHEEAVTDVAKG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQ+Q K+RD+ RPR G++R REF MKD+YSFD    G +  Y   + +
Sbjct: 121 EIDSYKRLPQLVYQLQTKWRDDPRPRAGLIRVREFTMKDSYSFDRDQAGMEKQYRAHYSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF   GL    + ++SG +GG ++HE++ L+  GE  +               T   
Sbjct: 181 YFRIFGHAGLPVTVVGSDSGMMGGKIAHEYMYLSPVGEDTIITCPGCGYTANRQVATFKK 240

Query: 241 D-IISLNSIVEQWTAPYAATSD 261
                     ++   P A T +
Sbjct: 241 TFFPEAPRPRKEVETPEARTIE 262



 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 18/224 (8%)

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYF 290
            +     +                   +D+ +       P        ++G+EVG+IF  
Sbjct: 361 NNLVAGANKPGCHYVDTNHGVDYSGTVADIASAAAGHGCPVCGEPLCVSKGVEVGNIFQL 420

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           GT+YS  M   ++  DG    V MGSYGIG  R++A + E  HD  G+  P +VAP+++ 
Sbjct: 421 GTRYSEAMGCLYQDEDGVRKPVIMGSYGIGVGRMLACLAEEYHDDSGLALPVTVAPYQVH 480

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           L+++   +Q      + IY RL+  G +V +DD  E  G +FA ADLLG P+++ VG++ 
Sbjct: 481 LVSLVKDEQ----VGDTIYGRLTHAGIEVLYDDRKESAGVKFADADLLGMPIRITVGNRS 536

Query: 411 VSDSKVEIKHR-----------LTGIREDMSLEEVINY-ASHRF 442
           + + KVE+K R               +E ++L + +      + 
Sbjct: 537 LKEGKVEVKLRSQPDEIHTFDLADLEKEIIALADSMEKNLKEKI 580


>gi|46108732|ref|XP_381424.1| hypothetical protein FG01248.1 [Gibberella zeae PH-1]
          Length = 745

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/448 (14%), Positives = 135/448 (30%), Gaps = 41/448 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   R+          +     + S G   +LP G +  + +  +I+ E  +    E+  
Sbjct: 319 EAAKRNHRKIGQ--DQKLFFFDEASPGSAFFLPHGVRIYNALMDLIKGEYQKRDFEEVMS 376

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +  ADLW  SG +  Y + M       +K     P +      IF     +Y++LP+ 
Sbjct: 377 PNMYKADLWKTSGHWGHYEENMFTFEVEKEK-FGLKPMNCPGHCKIFAHSDVTYKDLPWR 435

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                   R+E      G+ R R F   DA+ F    +  +      F     ++   G 
Sbjct: 436 MADFGTLHRNEFSGALSGLTRVRRFQQDDAHIFCTVDQIREE-IESAFDFLSSVYGIFGF 494

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               ++  + P         I   D  E ++            +  +  +   +      
Sbjct: 495 TF-KLKLSTRPEKYVGD---IATWDAAEKKL----------EEALESFAEKTGAKWEFNP 540

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---------SLPMSAT 301
              A Y    D+    LFD+L    +     ++      F  +Y         S   +  
Sbjct: 541 GDGAFYGPKIDI---ALFDALKREHQCGTMQLDFNLPRRFKLRYVANKGETGVSDGSNPE 597

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                G    V +    +G+   +  ++     GK   W        + ++         
Sbjct: 598 EDLPAGYARPVMIHRAVLGSFERMFGILTEHFGGKWPFWLSPRQVLVVPVMP------AA 651

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +++       G     D        +     L  F    +VG++      + I++R
Sbjct: 652 NDYAQEVQKIFKAKGLYSDVDLSSNTFQKKIRKGQLEQFNFIFVVGAEEKESRTLNIRNR 711

Query: 422 LTGIR----EDMSLEEVINYASHRFSNN 445
                    E ++++E +          
Sbjct: 712 DDQSTQAKGELVAIDEALEKLLQLKDTR 739


>gi|323181612|gb|EFZ67027.1| prolyl-tRNA synthetase [Escherichia coli 1357]
          Length = 547

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 112/210 (53%), Positives = 147/210 (70%), Gaps = 1/210 (0%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+REE N  GAIE+S+P +Q ADLW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++ YG E+LR  DR ++  + GPTHEEV+TD+ R+ + SY+ LP  FYQIQ KFRDE+RP
Sbjct: 61  WEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y +IF R+GL    ++A++G IGG 
Sbjct: 121 RFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGS 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            SHEF VLA +GE  V  S    D+    E
Sbjct: 181 ASHEFQVLAQSGEDDVVFSDT-SDYAANIE 209



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 112/187 (59%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG Y
Sbjct: 360 ADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCY 419

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           GIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L   G
Sbjct: 420 GIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQG 479

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   +++ 
Sbjct: 480 IEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVE 539

Query: 437 YASHRFS 443
           Y   +  
Sbjct: 540 YLVKQIK 546


>gi|323176512|gb|EFZ62104.1| prolyl-tRNA synthetase [Escherichia coli 1180]
          Length = 547

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 112/210 (53%), Positives = 147/210 (70%), Gaps = 1/210 (0%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+REE N  GAIE+S+P +Q ADLW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++ YG E+LR  DR ++  + GPTHEEV+TD+ R+ + SY+ LP  FYQIQ KFRDE+RP
Sbjct: 61  WEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y +IF R+GL    ++A++G IGG 
Sbjct: 121 RFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGS 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            SHEF VLA +GE  V  S    D+    E
Sbjct: 181 ASHEFQVLAQSGEDDVVFSDT-SDYAANIE 209



 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/189 (35%), Positives = 112/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 358 EVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 417

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 418 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 477

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 478 QGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 537

Query: 435 INYASHRFS 443
           I Y   +  
Sbjct: 538 IEYLVKQIK 546


>gi|309787126|ref|ZP_07681738.1| prolyl-tRNA synthetase [Shigella dysenteriae 1617]
 gi|308924704|gb|EFP70199.1| prolyl-tRNA synthetase [Shigella dysenteriae 1617]
          Length = 547

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 112/210 (53%), Positives = 147/210 (70%), Gaps = 1/210 (0%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+REE N  GAIE+S+P +Q ADLW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++ YG E+LR  DR ++  + GPTHEEV+TD+ R+ + SY+ LP  FYQIQ KFRDE+RP
Sbjct: 61  WEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y +IF R+GL    ++A++G IGG 
Sbjct: 121 RFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGS 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            SHEF VLA +GE  V  S    D+    E
Sbjct: 181 ASHEFQVLAQSGEDDVVFSDT-SDYAANIE 209



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 112/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 358 EVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 417

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 418 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 477

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 478 QGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 537

Query: 435 INYASHRFS 443
           + Y   +  
Sbjct: 538 VEYLVKQIK 546


>gi|312970296|ref|ZP_07784478.1| prolyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|110613794|gb|ABF02461.1| proline tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|310337794|gb|EFQ02905.1| prolyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|313646744|gb|EFS11203.1| prolyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|323160236|gb|EFZ46194.1| prolyl-tRNA synthetase [Escherichia coli E128010]
 gi|332098769|gb|EGJ03729.1| prolyl-tRNA synthetase [Shigella boydii 3594-74]
 gi|332762199|gb|EGJ92468.1| prolyl-tRNA synthetase [Shigella flexneri 4343-70]
          Length = 547

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 112/210 (53%), Positives = 147/210 (70%), Gaps = 1/210 (0%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+REE N  GAIE+S+P +Q ADLW ESGR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++ YG E+LR  DR ++  + GPTHEEV+TD+ R+ + SY+ LP  FYQIQ KFRDE+RP
Sbjct: 61  WEQYGPELLRFVDRGERPFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y +IF R+GL    ++A++G IGG 
Sbjct: 121 RFGVMRSREFLMKDAYSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGS 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            SHEF VLA +GE  V  S    D+    E
Sbjct: 181 ASHEFQVLAQSGEDDVVFSDT-SDYAANIE 209



 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 112/189 (59%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 358 EVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 417

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE ++D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 418 CYGIGVTRVVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 477

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R  G ++ +   ++
Sbjct: 478 QGIEVLLDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDI 537

Query: 435 INYASHRFS 443
           + Y   +  
Sbjct: 538 VEYLVKQIK 546


>gi|315054053|ref|XP_003176401.1| threonyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
 gi|311338247|gb|EFQ97449.1| threonyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
          Length = 765

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 77/477 (16%), Positives = 140/477 (29%), Gaps = 57/477 (11%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  +  L  L+E   R+      +  L      + S G    LP G K  + +  ++R E
Sbjct: 309 KLLQEHLKFLEEAEKRNHLKIGKEQELF--FFDEVSPGCPFLLPNGTKIFNALQKLLRTE 366

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F  
Sbjct: 367 YRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKRDWALKPMNCPGHCIMFGH 425

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    +        +F 
Sbjct: 426 RERSYRELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCTDNQIIGE-IEGLFD 484

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G     ++  + P                  +     +  DF         
Sbjct: 485 FLRAIYGLFGFSF-KLKLSTRP-----------------EKYLGKLETWDFAEAQLREAL 526

Query: 240 DDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS--- 295
                    + E   A Y    D+    + D+L    + +   ++      F  +Y    
Sbjct: 527 TKFKGAEWEIDEGDGAFYGPKIDI---TISDALKREHQCATIQLDYQLPLNFKLEYMTGE 583

Query: 296 ------------------LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                              P   +             G      + +  A+I S     G
Sbjct: 584 TIPKSAAPAAPQAPQAEAKPEGGSNSSQAQPSDSSNPGPGRARPVMIHRAIIGSFERFFG 643

Query: 338 IIWPDSVAPFKISLIN----IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           I+       +   L      I        D  E++   L     +V  D  G  +  +  
Sbjct: 644 ILIEHFGGKWPFWLSPRQILIVPVMASANDYVEELQEILRGDKLNVDIDLSGHTMQKKIR 703

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
              L  +    +VG++      V I++R     +     + LEE            R
Sbjct: 704 NGQLAQYNFIFVVGAQEKESRSVNIRNRDDPSSQTKGSLVPLEEARAKLRALRKERR 760


>gi|84394652|ref|ZP_00993343.1| prolyl-tRNA synthetase [Vibrio splendidus 12B01]
 gi|84374725|gb|EAP91681.1| prolyl-tRNA synthetase [Vibrio splendidus 12B01]
          Length = 551

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 107/257 (41%), Positives = 153/257 (59%), Gaps = 5/257 (1%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
            SH+LMLR GMI + + G+Y+WLP G + L  V  I+R+E +  GA+E+ +P +Q  +LW
Sbjct: 1   ISHQLMLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQEIDNAGAVEILMPVVQPFELW 60

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
            E+GR +  G E+LR  DR+ +  +  PT EEV+T + R+ I SY+ LP   YQIQ KFR
Sbjct: 61  EETGRSEKMGPELLRFTDRHSRPFVLSPTAEEVVTSLVRNEISSYKQLPLNLYQIQTKFR 120

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DE RPRFGVMR+REF M DAYSFD+  EG + SY  M  +Y + F R+GL+  P+ A+SG
Sbjct: 121 DERRPRFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHDAYCKAFDRMGLEYRPVLADSG 180

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN----TDFDDIISLNSIVEQWTAPY 256
            IGG  S EF VLA++GE  +       D+    E        +++ +    +E    P 
Sbjct: 181 AIGGSGSQEFHVLAESGEDLIAF-SSESDYAANIEKAEALAPTEEVAAPTQEMELVDTPN 239

Query: 257 AATSDVHNEKLFDSLPE 273
           A T     E+   ++ +
Sbjct: 240 AKTIAELVEQHGLAIEK 256



 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/190 (36%), Positives = 109/190 (57%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A   D+ N    D     +      RGIEVGHIF  G  YS  M+    G DGK   ++M
Sbjct: 362 AQVEDLRNVIEGDLSPCGQGTIQLKRGIEVGHIFQLGNTYSKAMNCNVLGPDGKSVILEM 421

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVA+ IE +HD  GI WPD++APF++++I +     +  ++A EK+YA L+
Sbjct: 422 GCYGIGVSRVVASAIEQNHDKFGITWPDALAPFQVAIIPMNMHKSERVKEAAEKLYAELT 481

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G +V +DD  E+ G  F   +L+G P  +++G + + +   E K+R TG +E ++++ 
Sbjct: 482 AMGIEVLFDDRKERPGVMFKDIELVGIPHTIVIGDRSMDEGNFEYKNRRTGDKEVIAMDT 541

Query: 434 VINYASHRFS 443
           VI +   + +
Sbjct: 542 VIEHLKAQLA 551


>gi|225155152|ref|ZP_03723647.1| threonyl-tRNA synthetase [Opitutaceae bacterium TAV2]
 gi|224804099|gb|EEG22327.1| threonyl-tRNA synthetase [Opitutaceae bacterium TAV2]
          Length = 646

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 77/496 (15%), Positives = 134/496 (27%), Gaps = 92/496 (18%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           FL   ++   RD       L L    I +   +G+  W P G      +   I EE  + 
Sbjct: 170 FLERQEQAKLRDHRKLGRDLKLF--HIDEDVGQGLILWTPAGSVVRQELQNFISEELRKQ 227

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA--------------------------- 97
           G  ++  P +    L+  SG +  Y                                   
Sbjct: 228 GYSQVFTPHIGKLALYKTSGHFPYYKDAQFPAIIEPDQLAQISAAGCSCADMTARLEAVS 287

Query: 98  ------------------DRNDKA-------MIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
                             DR +          +  P +      IF S   SYR+LP   
Sbjct: 288 PAFAAQLNERTGTAMIGADRINPDPTALLDGFLLKPMNCPHHIKIFASQPHSYRDLPVRL 347

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +    +R E      G+ R R F   DA+ F    + ++            +   LG+ 
Sbjct: 348 AEFGTVYRWEQSGELNGMTRVRGFTQDDAHLFCTEEQIAQE-IQGCLSLVKTVLSTLGMA 406

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +R              + L D    +   + +  D    +  T    +    +    
Sbjct: 407 DYRVR--------------VGLRDPDSNKYTGAAENWDKAENACRTAAQTLGVPFTEEPG 452

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    D     + D +    ++    ++      F          ++ GAD + H 
Sbjct: 453 EAAFYGPKIDF---VIKDVIGREWQLGTVQVDYNLPVRFD--------LSYIGADNQPHR 501

Query: 312 VQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             M          R    +IE       +                           EK+Y
Sbjct: 502 PVMIHRAPFGSMERFCGVLIEHFAGDFPVWLAPEQVRILPI-------SDKVAAYSEKLY 554

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L + G  V  D   ++IG++   A+L   P  ++ G K      + ++ R  G    M
Sbjct: 555 NELREAGVRVVLDSDSDKIGAKLRRAELSKIPYMIVAGQKEAEAEAISVRSRAKGDEGVM 614

Query: 430 SLEEVINYASHRFSNN 445
              +            
Sbjct: 615 PFADWKARLLEEIRTR 630


>gi|270292053|ref|ZP_06198268.1| proline--tRNA ligase [Streptococcus sp. M143]
 gi|270279581|gb|EFA25423.1| proline--tRNA ligase [Streptococcus sp. M143]
          Length = 617

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 105/257 (40%), Positives = 148/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDLTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  +V    
Sbjct: 241 QEEIKAELLKWMVSGED 257



 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   G+ +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGVNFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L + G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEANLMEAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + ++        + +
Sbjct: 593 IKATGDTIEVHADNLLETL--EILSKK 617


>gi|320102238|ref|YP_004177829.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Isosphaera
           pallida ATCC 43644]
 gi|319749520|gb|ADV61280.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Isosphaera
           pallida ATCC 43644]
          Length = 752

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/494 (13%), Positives = 128/494 (25%), Gaps = 75/494 (15%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
              I +   RD       L L T  I   +  G+  W+P G      +   +++E  + G
Sbjct: 253 LARIEEAKKRDHRRIGKDLHLFT--ISPLAGSGLVLWMPKGAMVRTILQQFLQDELLKRG 310

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGK-EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              +  P +   +L+  SG Y  Y   +   L   +D A       E        +  + 
Sbjct: 311 YQPVYTPHIGRVELYKTSGHYPYYSDSQFPTLKLLSDPAKRLVEAIESGEAMDDATACRL 370

Query: 125 YRNLPFTFYQIQLKFRD-------ELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNK 176
                     +             E+ P       RE  + ++     +        Y  
Sbjct: 371 LSEAGIPPVSVTPGSGSGGARSFTEMSPGERAAYVREHGVAEEYLLKPMNCPHHIEIYKA 430

Query: 177 MFVSYLRIFHRL-----------------------GLKSIPMRAESGPIGGDLSHEFI-- 211
              SY  +  RL                         +       +         E +  
Sbjct: 431 QQRSYRDLPVRLAEFGTVYRYEQSGELSGLTRVRGFTQDDAHLFCTPEQVRSEFAETMRL 490

Query: 212 -----------------VLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISLNSIVEQWT 253
                              +D  + +   +   +     ++     +D+           
Sbjct: 491 TQFVLESLGLSDYRVRLSRSDPDDPKFQGADASIWLKAEADIRAVLEDLGLPYDEGIGEA 550

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           A Y   +D     + D L    ++    ++      FG          + G D   H   
Sbjct: 551 AFYGPKADFL---VRDCLGRQWQLGTVQLDYVLPERFG--------LEYIGPDNAPHRPV 599

Query: 314 MGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           M          R +  +IE       +                        +    +   
Sbjct: 600 MIHRAPFGSMERFMGILIEHFAGAFPLWLAPEQVRVLPI-------SDKFNEYGRTVLHT 652

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G     D   E+IG++   A L   P+ ++VG+K      V  + R+ G R  +SL
Sbjct: 653 LRQAGLRAELDQRPEKIGAKIRDAQLEKIPVMLVVGAKEAETGTVSYRDRVDGDRGVVSL 712

Query: 432 EEVINYASHRFSNN 445
            + +          
Sbjct: 713 ADAVASLRREVETR 726


>gi|149193855|ref|ZP_01870953.1| prolyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
 gi|149135808|gb|EDM24286.1| prolyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
          Length = 574

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 111/288 (38%), Positives = 162/288 (56%), Gaps = 1/288 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F   L+E P+DA   SH  ++R G I Q + GIY + PLG+  LDN+  II++E
Sbjct: 1   MRFSRLFCYTLKEAPKDAVTPSHIYLIRGGYIKQVAAGIYDFAPLGKIVLDNIRDIIKKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA E+ +  +   +LW E+GR   YG E+LR+ DR     +  PT+EE + D+ RS
Sbjct: 61  MDNSGAQEVMLSFITPYELWEETGRAKKYGDELLRIEDRKGNKFVLSPTNEESIVDLVRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++KSY+ LP   YQI LKFRDE RPRFG++R REF+MKDAYSF    E     +N M  +
Sbjct: 121 YVKSYKQLPINLYQINLKFRDEARPRFGLLRGREFIMKDAYSFHKDEEDLDREFNLMEET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF ++GL    + A+SG IGG  S EF+VLA+TGE  +    +  ++    E     
Sbjct: 181 YKKIFSKMGLDFRVVEADSGAIGGSGSKEFMVLANTGEDDIVVCSEC-NYAANIEVAKRK 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
            I   N I  +        +    E++ + L  +   S + +    IF
Sbjct: 240 TIKKENPIKTETIEEVYTPNKKTIEEVCEFLGIDPYFSIKAVVKKAIF 287



 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 103/221 (46%), Gaps = 3/221 (1%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEV 284
             +  +   N     I     +            D+   K  D  P+        +GIEV
Sbjct: 355 MAEELVCGANKKDYHIKGAGLLDANLLGNLTIYRDIAAVKEGDLCPKCGKPLKITKGIEV 414

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHIF  G  YS PM+ATF   +GK     MG YGIG  R++AA IE +HD KGIIWP  +
Sbjct: 415 GHIFKLGDVYSKPMNATFLDENGKAKPFIMGCYGIGVSRLIAAAIEQNHDDKGIIWPKEI 474

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           APF + +I      +      E +Y +L      V  DD  E+ G +    +LLGFP  V
Sbjct: 475 APFVVDIIIGDVKKENQVKFAENLYEKLKSENIKVLLDDRKERFGVKINDFELLGFPYAV 534

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           IVG K + D  VEI+ R +  + ++  +EV ++   +   +
Sbjct: 535 IVGKK-LKDGIVEIRDRRSDEKIEVKSDEVFDFLKEKLKKD 574


>gi|294655282|ref|XP_002770111.1| DEHA2B10252p [Debaryomyces hansenii CBS767]
 gi|199429831|emb|CAR65481.1| DEHA2B10252p [Debaryomyces hansenii]
          Length = 733

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 156/448 (34%), Gaps = 41/448 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   RD      +  L T   ++ S G   WLP G +  + +  ++R+E  + G 
Sbjct: 314 LKFLKEASERDHRRIGKEQELFT--FNEMSPGSAFWLPHGTRIYNTLTDLMRKEYRQRGY 371

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + ++ LW  SG + +Y + M       +      P +      +F+S  +SYR
Sbjct: 372 DEVITPNMYNSKLWETSGHWGNYKENMFSFEVEKET-FGLKPMNCPGHCLMFKSRERSYR 430

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP+      +  R+EL     G+ R R F   DA+ F    +        +F    +I+
Sbjct: 431 ELPWRVADFGVIHRNELSGALSGLTRVRRFQQDDAHIFCTQEQIESE-IGGVFDFLQKIY 489

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G +       + P       E    A+                  + NT        
Sbjct: 490 GVFGFEFKM-ELSTRPEKYVGDIETWNNAEANL-------------ENALNTFLG--KGK 533

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             +     A Y    D+    + D+L    + +   ++    F    ++ L   A     
Sbjct: 534 WELNPGDGAFYGPKIDIM---ISDALKRWFQCATIQLD----FQLPNRFELEYKAETNDK 586

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                  V +    +G++  + A++    +     WP  ++P +I ++ +        + 
Sbjct: 587 SNTIGRPVMIHRAILGSVERMTAILT---EHYKGKWPFWLSPRQILVVPVGVK---YFEY 640

Query: 365 CEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL- 422
            + +  +L+K  G     D  G  +  +     +  +    IVG +      V +++R  
Sbjct: 641 AQSLQNKLNKEYGFYADVDVSGNTLQKKVRTGQVYKYNFIFIVGEQEQEQQGVNVRNRDI 700

Query: 423 ---TGIREDMSLEEVINYASHRFSNNRP 447
               G  + +  ++V+          R 
Sbjct: 701 QEEQGKNDMVKFDDVVQQLIKLREEMRQ 728


>gi|56417255|ref|YP_154329.1| threonyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
 gi|73919765|sp|Q5P9F6|SYT_ANAMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56388487|gb|AAV87074.1| threonyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
          Length = 636

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 142/438 (32%), Gaps = 40/438 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   + +   RD    +  L      I   + G   W   G      +   IR +  
Sbjct: 230 LASYIHNMQEAEKRDHRKIAKDLGWF--HIQNEALGQVFWHDKGWVIYRIIEEYIRCKLK 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P +    LW +SG ++ + + M  + D + K +   P +      IF+S I
Sbjct: 288 KHGYHEVKTPIMLDRKLWEKSGHWEKFKENMFVVED-DKKELAIKPMNCPCHVQIFKSKI 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY+ LP    +  +  R+E     +G+MR R F   DA+ F    +       + +   
Sbjct: 347 RSYKELPIRMAEFGMCHRNEPSGSLYGLMRVRGFTQDDAHIFCTHEQVRDE-VLRFYELL 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++   G  S+ ++    P     S E                   D    S     + 
Sbjct: 406 MEVYKDFGFDSVTVKLSDRPENRIGSDE-----------------IWDRSEQSLMEPMNA 448

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +    +I +   A Y    +     L DS+    +     ++       G        A 
Sbjct: 449 LGVQYTINKGEGAFYGPKLEF---TLKDSIGREWQCGTVQLDFVLPDRLG--------AY 497

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G DGK H    +    +G +     ++   + G    W           + I      
Sbjct: 498 YIGEDGKKHIPVIIHRAILGTIERFIGILIEHYAGNIPAW------LAPVQLEILTVSGE 551

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +    +    S+    V  +   E I  +   A     P+  +VG     D  V ++ 
Sbjct: 552 VAEYARDLAEMASQENVRVELNAAEENISHKIRKAIFNKVPIVWVVGKSEAGDRGVSVRR 611

Query: 421 RLTGIREDMSLEEVINYA 438
             +G    M+  + +   
Sbjct: 612 YGSGETCRMAAGKALKTL 629


>gi|325109306|ref|YP_004270374.1| prolyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305]
 gi|324969574|gb|ADY60352.1| Prolyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305]
          Length = 578

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 112/228 (49%), Positives = 153/228 (67%), Gaps = 3/228 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR ++  +P ++E P DAE+ SH+LMLR G+I Q   G Y++LPLG +++    AIIREE
Sbjct: 1   MRWTQSLIPTMKETPADAEVPSHQLMLRAGLIRQLMAGAYTYLPLGWRSVQKAAAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK---AMIYGPTHEEVMTDI 117
             R GA E+ +P LQ  +L+  +GR +++G  +++           +  GPTHEEV+TD+
Sbjct: 61  MERAGACELHMPALQPIELFERTGRINAFGSVLMKFDVPRGDRKVPVALGPTHEEVVTDL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              HI SYR LP T YQIQ KFR+E RPRFGV+R+ EFLMKDAYSF  + E    +Y+ M
Sbjct: 121 ISRHISSYRQLPLTVYQIQTKFRNEERPRFGVLRTSEFLMKDAYSFASSLEQLNTTYDAM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           + +Y R+F R GL+ IP+ AESGPIGGD SHEF++ AD GE Q+   K
Sbjct: 181 YDAYCRVFKRCGLEFIPVEAESGPIGGDASHEFMIPADNGEDQIVYCK 228



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/193 (36%), Positives = 105/193 (54%), Gaps = 2/193 (1%)

Query: 259 TSDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T D+ N    D  P+         GIEVGH+F  GTKYS  +SA +     K H + MG 
Sbjct: 384 THDLRNAAAGDPCPKSGEPMDLVHGIEVGHVFKLGTKYSESLSAMYLDEHEKRHPIIMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+VA + E+ HD KG++WP S+AP+++ +I +K  D+    A   IYA L + G
Sbjct: 444 YGIGVNRIVAGLAETRHDDKGLLWPISIAPYEVLIIPLKTDDEELMSAANSIYAELKEQG 503

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD   + G +F  ADL+G P ++++G K + +   E+K R     E + L++V+ 
Sbjct: 504 VDVLMDDRSARPGVKFNDADLIGIPYRIVIGGKGLKEGVAEVKARTDADAEKVPLDQVVA 563

Query: 437 YASHRFSNNRPVL 449
             +   S  +  L
Sbjct: 564 NVTSLVSAAKEAL 576


>gi|291165911|gb|EFE27958.1| threonine--tRNA ligase [Filifactor alocis ATCC 35896]
          Length = 655

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 155/445 (34%), Gaps = 36/445 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT- 64
           Y + + +   RD      ++ L T  +    +G+   LP G K +  +   I + ++R  
Sbjct: 230 YLVYLEEIKKRDHNKLGREMELFTT-VDVIGQGLPLLLPKGTKMVMKLQRWIEDLEDREW 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRSHI 122
           G +    P +  +DL+  SG +D Y + M  L D   + +     P        ++++  
Sbjct: 289 GYVRTKTPLMAKSDLYRISGHWDHYKEGMFVLGDEEVDKEVFALRPMTCPFQYYVYKNTQ 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP+   +    FR+E      G+ R R+F + + ++     +  +   N + ++ 
Sbjct: 349 KSYRDLPYRMGETSTLFRNEDSGEMHGLTRVRQFTISEGHNVVRPDQAEEELQNCLNLAV 408

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                            +  +  D++            +    + + +    +      +
Sbjct: 409 -------------YVLTTLGLQDDVTFRLSKWDPNNREKYLGDESYWETTQEALRNILVE 455

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                   +   A Y    D+    ++      K  +   I            +      
Sbjct: 456 KGLPFKEADGEAAFYGPKIDIQARNVY-----GKEDTMITI------QLDCAIAENFDMY 504

Query: 302 FKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   +G+     +     +G      A +    +     +P  + P ++ ++ I      
Sbjct: 505 YIDQNGEKKRPYIIHRTSLGCYERTLAWLI---EKYAGKFPTWLCPEQVRILPISDK--- 558

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  E++   L++ G DV  D   E+IG +   A L   P  ++VG K  SD  V ++ 
Sbjct: 559 YAEYAEEVKQELARNGVDVTVDHRSEKIGFKIRDARLNRLPYMLVVGEKEASDRTVSVRS 618

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G     +++  ++         
Sbjct: 619 RYAGDEGIEAVDSFVDRICKEIRTK 643


>gi|115389848|ref|XP_001212429.1| threonyl-tRNA synthetase [Aspergillus terreus NIH2624]
 gi|114194825|gb|EAU36525.1| threonyl-tRNA synthetase [Aspergillus terreus NIH2624]
          Length = 713

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 77/462 (16%), Positives = 140/462 (30%), Gaps = 49/462 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ +  L  L+E   R+         L        S G    LP G K  + +  ++R E
Sbjct: 279 KQMQEHLKFLEEAEKRNHLRIGKDQELF--FFDDVSPGCAFLLPNGTKIFNALQTLLRSE 336

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W  SG +  Y  +M +L D   +     P +      +F  
Sbjct: 337 YRKRGYQEVQTPNMYDVGIWKTSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHFVLFGH 395

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    +        +F 
Sbjct: 396 RERSYRELPLRIADFGVLHRNEASGALSGLTRVRKFQQDDTHIFCTQDQIMSE-IEGLFD 454

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G     ++  + P                  +     +  ++         
Sbjct: 455 FLQSIYGLFGFTF-KLKLSTRP-----------------EKYLGELETWNYAEEQLKAAM 496

Query: 240 DDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                 +  + E   A Y    D+    + D+L    + +   ++      F  +Y    
Sbjct: 497 TKFKGDDWTIDEGDGAFYGPKIDI---TIADALKREFQCATIQLDYQAPLNFKLEYMTHE 553

Query: 299 SATFKG---------ADGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFK 348
            A  K            G+   V +    IG+  R +  +IE                  
Sbjct: 554 RADVKDGETAKPGEPGPGRARPVVIHRAIIGSFERFLGILIEHFGGKWPFWISPRQILIV 613

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
             +  +        D  E++   L     +V  D  G  +  +     L  +    +VG+
Sbjct: 614 PVMPAVN-------DYVEELQTILRGDKLNVDIDISGNTMQKKIRNGQLAQYNFIFVVGA 666

Query: 409 KFVSDSKVEIKHRL---TGIREDM-SLEEVINYASHRFSNNR 446
                  V I++R    T  +  M  LEE            R
Sbjct: 667 SEKESRSVNIRNRDDPATQKQGVMIPLEEAREKLRVLRKERR 708


>gi|306828825|ref|ZP_07462017.1| proline--tRNA ligase [Streptococcus mitis ATCC 6249]
 gi|304429003|gb|EFM32091.1| proline--tRNA ligase [Streptococcus mitis ATCC 6249]
          Length = 617

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 105/257 (40%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSVASFDEIPEEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  +V    
Sbjct: 241 QEEIKAELLKWMVSGED 257



 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   G+ +P  +APF + LI + A D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGVNFPKELAPFDVHLITVNAKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEANLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + ++        + +
Sbjct: 593 IKATGDTIEVHADNLLETL--EILSKK 617


>gi|307720827|ref|YP_003891967.1| prolyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294]
 gi|306978920|gb|ADN08955.1| prolyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294]
          Length = 568

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 108/265 (40%), Positives = 153/265 (57%), Gaps = 5/265 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MRRSK F+P  +E P DA + SH  + R G I Q + G+Y++LPL ++ +  +  II EE
Sbjct: 1   MRRSKAFIPTTKEAPSDATLPSHIFLSRAGFITQVAAGLYNYLPLAKRVIKKIENIINEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA E+ +  +  A+LW ESGR + +GKE+LR  DR +   + GPTHEE+M D+ R+
Sbjct: 61  MTKIGAQEVELSFVTPAELWQESGRIEKFGKELLRFHDRKNNLFVLGPTHEEMMVDVVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+NLP   YQI+ KFRDE RPRFG+MR REF+MKD YSF  T E     ++ +  +
Sbjct: 121 RVTSYKNLPLNLYQIKTKFRDEARPRFGLMRGREFIMKDGYSFHATTEDLDREFDTVEEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  RLGL    + A+SG IGG  S E +VLAD+GE  +       ++    E     
Sbjct: 181 YKKILTRLGLDFRIVEADSGAIGGSGSKELMVLADSGEDTIAVCSKC-EYGANIEAASRS 239

Query: 241 DIISLNSIVE----QWTAPYAATSD 261
               +    E    ++  P   T D
Sbjct: 240 KRSHIPEAPEVTFNKFKTPDVKTID 264



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 1/228 (0%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D  +  +          I   N      I ++  V    A +   ++V+   +     E 
Sbjct: 342 DKAKHVIDSDLKDAKDMICGANEAGYHYIGVDLSVLSDVAYFEDIAEVNEGDICPHCEEG 401

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                +GIEVGHIF  GT YS  + A F   +GK     MG+YG+G  R+VAAVIE  HD
Sbjct: 402 TLSFTKGIEVGHIFKLGTTYSEALKAEFLDENGKAQPFIMGTYGMGVSRMVAAVIEQHHD 461

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             G IW  + AP+ ++++     D+    A EK+Y +L     +V  DD  E+ G +   
Sbjct: 462 DNGCIWTKATAPYMVNIMISNIKDEAQVQAGEKLYKQLQDADVEVMLDDRKERFGFKMKD 521

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           A+L+GFP  +++G K + +  ++I  R+T  + D+  EE+ N      
Sbjct: 522 AELIGFPYTIVIG-KELVNGHMQIFERVTKEKTDIKSEEIFNKIMELV 568


>gi|312867906|ref|ZP_07728110.1| proline--tRNA ligase [Streptococcus parasanguinis F0405]
 gi|311096310|gb|EFQ54550.1| proline--tRNA ligase [Streptococcus parasanguinis F0405]
          Length = 616

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKGIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRYD+YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYDTYGEDLYKLKNREGSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV----LADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPTRTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  +V    
Sbjct: 241 QEEIKAELLKWMVSGED 257



 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ K V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGKGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  +I   L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 ASLALTNRIEEALVNKGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   ++  + ++   S
Sbjct: 593 IKATGDTIEVHADNLLETLS 612


>gi|212534744|ref|XP_002147528.1| threonyl-tRNA synthetase, putative [Penicillium marneffei ATCC
           18224]
 gi|210069927|gb|EEA24017.1| threonyl-tRNA synthetase, putative [Penicillium marneffei ATCC
           18224]
          Length = 724

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 77/460 (16%), Positives = 136/460 (29%), Gaps = 52/460 (11%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   R+ +    +  L        S G    LP G K  + +  ++R E  + G 
Sbjct: 291 LKFLEEAEKRNHQKIGKEQELF--FFDDVSPGCPFLLPNGTKIFNALQKLLRSEYRKRGY 348

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    +W  SG +  Y  +M +L D   +     P +      +F    +SYR
Sbjct: 349 QEVQTPNMYDVSIWKTSGHWAHYSDDMFKL-DVEKREWALKPMNCPGHFMLFGHRERSYR 407

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP       +  R+E      G+ R R+F   D + F    + S      +F     I+
Sbjct: 408 ELPLRIADFGVLHRNEASGALSGLTRVRKFQQDDTHIFCTAEQISSE-IEGLFDFLKSIY 466

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G     ++  + P       E    A+    Q        D+ I             
Sbjct: 467 GLFGFTF-KLKLSTRPEKYMGELEAWNYAEDQLRQALNKFMGDDWEIN------------ 513

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPM----- 298
               E   A Y    D+    + D+L    + +   ++      F      +        
Sbjct: 514 ----EGDGAFYGPKIDI---TIADALKREFQCATIQLDYQAPINFKLEYITNEKQASADP 566

Query: 299 --------SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
                    A     +     V   +      R +  +IE                    
Sbjct: 567 KANNDGAEKAKETNVNRARPVVIHRAIIGSFERFLGILIEHFAGKWPFWISPRQILIVPV 626

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +  +        D  +++   L     +V  D  G  +  +     L  +    +VG++ 
Sbjct: 627 MPALN-------DYAKELQQILLADKLNVDVDVSGNTLQKKIRTGQLAQYNFIFVVGAQE 679

Query: 411 VSDSKVEIKHRLTGIR----EDMSLEEVINYASHRFSNNR 446
                V I++R         E +SLEE            R
Sbjct: 680 RDSRSVNIRNRDDPASHAKGELISLEEARVKLRALRKERR 719


>gi|330464914|ref|YP_004402657.1| prolyl-tRNA synthetase [Verrucosispora maris AB-18-032]
 gi|328807885|gb|AEB42057.1| prolyl-tRNA synthetase [Verrucosispora maris AB-18-032]
          Length = 583

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 102/239 (42%), Positives = 138/239 (57%), Gaps = 1/239 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S   L  L+++P DAE+ SH+L+LR G + + + G Y+WLPLG+  LD V+ I+R E 
Sbjct: 4   RMSTTLLRTLRDDPADAEVPSHRLLLRAGYLRRAAPGGYTWLPLGKLVLDRVSEIVRAEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P L  A+ +  SGR+  YG ++  LADR     +  PTHEE+   + +  
Sbjct: 64  AAIGGQEVHFPALLPAEPYRTSGRWTEYGDDIFTLADRRGAEHLLAPTHEEMAALLVKEL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SYR+LP T +QIQ KFRDE RPR G++R REFLMKDAYSFDL  EG + +Y +   +Y
Sbjct: 124 FTSYRDLPVTLFQIQTKFRDEARPRAGLLRGREFLMKDAYSFDLDDEGLRAAYGRHRAAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            +IF RLGL    + A SG +GG  S EF+  A  GE       D  D    +E     
Sbjct: 184 QKIFDRLGLDYTVVHAVSGAMGGSASEEFLATAAVGEDTYVGCTDC-DHAANTEAVTTP 241



 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 64/186 (34%), Positives = 97/186 (52%), Gaps = 7/186 (3%)

Query: 258 ATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
            T +    +  D  P   + +    RGIE+GHIF  G +Y+   +    G  GK   + M
Sbjct: 396 GTVEAAEVRPGDPCPACAQGRLTMRRGIEIGHIFQLGRRYTDAFAVDVLGPQGKPVRLTM 455

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R VAA+ E  HD +G++WP SVAP  + L+          DA   + A+L+ 
Sbjct: 456 GCYGIGVSRAVAAIAEQHHDERGLVWPTSVAPCDVHLVAAGKG--PQLDAAVDLGAQLAA 513

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V  DD  G   G +F  A+L+G P  V+VG + ++D  VE++ R TG R ++SL +
Sbjct: 514 AGLRVLVDDRVGVSAGVKFTDAELIGIPRTVVVGRR-LADGYVELRDRATGERVELSLPD 572

Query: 434 VINYAS 439
           ++   +
Sbjct: 573 LLAQLA 578


>gi|319945653|ref|ZP_08019905.1| proline--tRNA ligase [Streptococcus australis ATCC 700641]
 gi|319748252|gb|EFW00494.1| proline--tRNA ligase [Streptococcus australis ATCC 700641]
          Length = 616

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 105/257 (40%), Positives = 148/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV----LADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPSRTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  +V    
Sbjct: 241 QEEIKAELLKWMVSGED 257



 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   KI  +L K G +V  DD  E+ G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 ASLELTSKIEDQLVKAGYEVLVDDRNERAGVKFSDSDLIGLPIRITVGKK-AADGVVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + +G   ++  + ++   S
Sbjct: 593 IKASGDTIEVHADNLLETLS 612


>gi|86158405|ref|YP_465190.1| threonyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123736663|sp|Q2IJC0|SYT_ANADE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|85774916|gb|ABC81753.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 650

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 141/446 (31%), Gaps = 49/446 (10%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L T   H+++ G   WLP G    + +   +R    + G 
Sbjct: 238 LAKLEEVKKRDHRRLGPQLGLFT--FHEYAPGAPFWLPAGTVLYNVLEDAMRRLVLKNGY 295

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLAD---------RNDKAMIYGPTHEEVMTDI 117
            E+  P L +  LW  SG +  Y + M  + D          +  +    P +      I
Sbjct: 296 QEVKTPLLFNKRLWETSGHWGKYRENMFLVVDSESDPALALEDRCSFSLKPMNCPSHHLI 355

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           +R   +SYR LP  ++      R+E      G+ R R+F   DA+ +    + +     +
Sbjct: 356 YRMDKRSYRELPVRYFTTDALHRNEASGSLGGLTRVRQFEQDDAHIYLREEQVTDE-VLR 414

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +F     ++   GL                   F     T   Q        D       
Sbjct: 415 IFELMKVVYGAFGLG------------------FEATFSTRPEQRIGDDALWDRAEALLR 456

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              D      ++     A Y    D+    + DSL    +     ++             
Sbjct: 457 KSLDATGLKWTLNPGDGAFYGPKIDML---VTDSLGRRWQTCTIQLDYAAP--------E 505

Query: 297 PMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
               TF G D K+H    +     G+     A++    +     +P  +AP +  ++ + 
Sbjct: 506 RFDLTFVGEDNKEHRPVVIHRAIYGSFERFIAILT---EHYAGAFPAWLAPVQARVVTVS 562

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                               G  V  D   +++G++   A L   P  ++VG K V    
Sbjct: 563 DRFDAWAREAAAALQA---RGWRVEVDGSSDKLGAKIRNAQLAKIPFTLVVGEKEVEARG 619

Query: 416 VEIKHRLTGIREDMSLEEVINYASHR 441
           V  +       + M LE      +  
Sbjct: 620 VSPRRHGGEDLKTMPLETFAELMARE 645


>gi|157736649|ref|YP_001489332.1| prolyl-tRNA synthetase [Arcobacter butzleri RM4018]
 gi|166980098|sp|A8ERT9|SYP_ARCB4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157698503|gb|ABV66663.1| prolyl-tRNA synthetase [Arcobacter butzleri RM4018]
          Length = 568

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 141/235 (60%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F+P  +E P DA + SH+ ++R G I Q   GIY ++PLG+  L+ + AI++EE
Sbjct: 1   MKFSKMFIPTTKETPNDATLPSHQYLVRGGFIAQTGAGIYDFMPLGKIVLEKIRAIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+    +    LW ESGR  + G EMLR  DR +   +  PT+EE + ++ ++
Sbjct: 61  MDEAGANEVQFGFVTPLTLWQESGRATTMGAEMLRFKDRKNGEFVLSPTNEEAVVNMVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   YQI  KFRDE RPRFG+MR REFLMKD YSF  + E     +N M  +
Sbjct: 121 RITSYKDLPLHLYQINTKFRDEARPRFGLMRGREFLMKDGYSFHSSEEDLVREFNLMETT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +I+ +LGL    + A+SG IGG  S EF V+AD+GE  +       D+    E
Sbjct: 181 YKKIYTKLGLDFRVVAADSGAIGGSGSKEFHVIADSGEDTLVVCDSC-DYGANIE 234



 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 67/180 (37%), Positives = 95/180 (52%), Gaps = 2/180 (1%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E    +    K    +GIE GHIF  GTKYS  M+A F   +GK     MG YGIG  R+
Sbjct: 390 EGDICACCGGKLSYTKGIEAGHIFQLGTKYSSAMNANFLDENGKAKPFIMGCYGIGVSRL 449

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           VAAVIE +HD KG IW  + APF + +I   +  +      E++Y++L + G     DD 
Sbjct: 450 VAAVIEQNHDDKGCIWTKATAPFMVDIIVSNSKKEEEAKVGEELYSKLKQAGISTILDDR 509

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              + G + +  +LLGFP  V++G K + D  VEI  R T  + D+ ++EVI+       
Sbjct: 510 INARFGFKMSDFELLGFPYAVVIGKK-LEDGLVEIVDRKTLEKIDVKVDEVISKILELVK 568


>gi|32491346|ref|NP_871600.1| prolyl-tRNA synthetase [Wigglesworthia glossinidia endosymbiont of
           Glossina brevipalpis]
 gi|81844435|sp|Q8D1V9|SYP_WIGBR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|25166553|dbj|BAC24743.1| proS [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 561

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 113/288 (39%), Positives = 165/288 (57%), Gaps = 2/288 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y+L  L+++P + E  SH+LM+R+GMI + S G+Y+WLP G + L  +  IIR E
Sbjct: 1   MRTSQYYLATLKDSPSETEGISHRLMIRSGMIRKLSSGLYAWLPTGFRVLKKIENIIRHE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q + +W  SGRY+ YG E+L+  DR  K  +  PTHEEV++ I   
Sbjct: 61  MNKIGAIEILMPIIQPSLIWKNSGRYEEYGLELLKFYDRKKKQFVLAPTHEEVISKIILK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I   +  P  FYQI  KFRDE RPR G MRS+EF+MKD+YSF L  +  + +Y+ M  +
Sbjct: 121 EINFNKVFPINFYQIYSKFRDEARPRCGTMRSKEFVMKDSYSFHLNEKSLEKTYHIMQET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF+RL L    +RA++G IGG +SHEF    +  +  +   K   D    +    F 
Sbjct: 181 YKKIFNRLNLDYFVIRAKTGKIGGFISHEFHAYYNKSDVLINSYKKIFDK--NNIINKFK 238

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
             I + +++E        TSD+  +   D     K +    IE  H F
Sbjct: 239 KKIEIKNLIEINAEDILLTSDLAKKFNIDIKQIIKILLVHSIEKNHPF 286



 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/160 (33%), Positives = 91/160 (56%), Gaps = 2/160 (1%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IE+GHIF  G KYS P++ +      K      G YGIG  R+V+  IE ++D  GIIW 
Sbjct: 396 IEIGHIFQLGDKYSKPLNYSLLKDYNKKKIFM-GCYGIGISRLVSTYIEQNYDSNGIIWN 454

Query: 342 DSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           + +APFK+++I I  +     ++  E+IY +L  +  DV + D  E+ G  F+  +L+G 
Sbjct: 455 EEIAPFKVAIIPININFSIKVKNFSEEIYYKLCNLKIDVLFYDNVERPGIMFSNIELIGI 514

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           P  +I+  K + +S +E K+R+TG +  ++ + + ++   
Sbjct: 515 PHILIISDKNLKNSIIEYKNRITGDKLMINYKYIFDFLLQ 554


>gi|160878906|ref|YP_001557874.1| threonyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|160427572|gb|ABX41135.1| threonyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 652

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 145/446 (32%), Gaps = 39/446 (8%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL  L++   RD      ++ L    +    +G+   +P G K +  +   I +E+ R G
Sbjct: 229 FLNHLEDIKKRDHNKLGREMELFAT-VDVIGQGLPLLMPKGAKMIQTLQRWIEDEEERRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA---MIYGPTHEEVMTDIFRSHI 122
            +    P L   DL+  S  ++ Y + M  L D  D+        P        +++   
Sbjct: 288 YMRTKTPLLAKKDLYEISDHWNHYKEGMFVLGDEEDENAEVFALRPMTCPFQYYVYKQSQ 347

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP  + +    FR+E      G+ R R+F + + +    TPE  +  +       
Sbjct: 348 KSYRDLPCRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLIV-TPEQLEEEFKGCVDLA 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                 LGL              D+++         + +   +++  +          + 
Sbjct: 407 KYCLTTLGLAD------------DVTYRLSKWDPNNQGKYLGNEETWNKVQNMMRDILNH 454

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           I    +  +   A Y    D+  + ++      K  +   I            +     T
Sbjct: 455 IGLDFTEEDGEAAFYGPKLDIQAKNVY-----GKEDTMITI------QLDMFLADRFDMT 503

Query: 302 FKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHD-GKGIIWPDSVAPFKISLINIKAHDQ 359
           +  A+G+      +    +G      A +   +                          +
Sbjct: 504 YIDANGEKKRPYIIHRTSMGCYERTLAWLIEKYAGKFPTWLCPEQVRILPI-------SE 556

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  + +   L   G  V  D+  E+IG +   A L   P  ++VG K   +  V ++
Sbjct: 557 KYSDYAKMVEKELLDNGVLVTVDNRAEKIGYKIREARLDRVPYMLVVGQKEAEEGLVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R  G      + + ++         
Sbjct: 617 SRYLGDEGQKKVSDFVDAICKEIRTK 642


>gi|296272187|ref|YP_003654818.1| prolyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
 gi|296096362|gb|ADG92312.1| prolyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
          Length = 572

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 102/248 (41%), Positives = 150/248 (60%), Gaps = 1/248 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F+P  +E P DA +ASH+ ++R G I Q   G+Y++LPLG+  LD + A+++EE
Sbjct: 1   MKFSQMFMPTTKETPNDATLASHQYLIRGGFITQTGSGLYNFLPLGKIVLDKIRAVVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + TGA E+ +  +   +LW +SGR    G E+L+  DR     +  PT+EE + DI ++
Sbjct: 61  MDNTGANELLMSFVTPLELWEQSGRASVMGPELLKFKDRKGAGFVLSPTNEETVVDIVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   Y I  KFRDE RPRFG+MR REFLMKDAYSF  T E     ++ M  +
Sbjct: 121 RITSYKDLPINLYHINTKFRDEARPRFGLMRGREFLMKDAYSFHATHEDLVREFHVMEDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I+ RLGL+   + A+SG IGG  S EF+VLA++GE  +   +D  ++    E     
Sbjct: 181 YKKIYERLGLEYRVVAADSGAIGGSGSKEFMVLANSGEDTIVVCEDC-EYGANIEAAVRA 239

Query: 241 DIISLNSI 248
              + N  
Sbjct: 240 KKETKNWY 247



 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/178 (41%), Positives = 97/178 (54%), Gaps = 2/178 (1%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E    S    K +  +GIE GHIF  GTKYS  M ATF   +GK     MG YGIG  R+
Sbjct: 395 EGDTCSCCGGKLIHTKGIEAGHIFQLGTKYSSAMDATFLDNNGKAQPFIMGCYGIGVSRL 454

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           VAAVIE +HD KG IW    APF + +I   A  +   +A +KIY  L   G     DD 
Sbjct: 455 VAAVIEQNHDDKGCIWTKETAPFMVDVIVSNAKKEEELNAGKKIYNDLKIAGISTILDDR 514

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              + G + +  +L+GFP  V+VG K + +  VEI +R T  +E++SL+EV+N     
Sbjct: 515 VNARFGFKMSDFELIGFPYAVVVGKK-LPEGIVEIVNRKTLEKEEVSLDEVVNKLKKL 571


>gi|322390835|ref|ZP_08064345.1| proline--tRNA ligase [Streptococcus parasanguinis ATCC 903]
 gi|321142505|gb|EFX37973.1| proline--tRNA ligase [Streptococcus parasanguinis ATCC 903]
          Length = 616

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 107/279 (38%), Positives = 154/279 (55%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKGIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREGSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R G+    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGIDYKAIIGDGGAMGGKDSQEFMAVTPARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            +      L  +V        ++   +   L  +  E K
Sbjct: 241 QEEIKAELLKWMVSGEDTIAYSSESTYAANLEMATNEYK 279



 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 99/200 (49%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ K V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGKGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 ASLALTDRIEEALVNKGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   ++  + ++   S
Sbjct: 593 IKATGDTIEVHADNLLETLS 612


>gi|70993228|ref|XP_751461.1| threonyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66849095|gb|EAL89423.1| threonyl-tRNA synthetase, putative [Aspergillus fumigatus Af293]
 gi|159125604|gb|EDP50721.1| threonyl-tRNA synthetase, putative [Aspergillus fumigatus A1163]
          Length = 737

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 74/467 (15%), Positives = 144/467 (30%), Gaps = 54/467 (11%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ +  L  L+E   R+         L      + S G    LP G K  + + A++R E
Sbjct: 298 KQMQEHLKFLEEAEKRNHLRIGKDQELF--FFDEVSPGCPFLLPNGTKIFNALQALLRAE 355

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W  SG +  Y  +M +L D   +     P +      +F  
Sbjct: 356 YRKRGYQEVQTPNMYDVGIWKRSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHFVLFGH 414

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    + +      +F 
Sbjct: 415 RERSYRELPLRIADFGVLHRNEASGALSGLTRVRKFQQDDTHIFCTQDQIASE-IEGLFD 473

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G     ++  + P                  +     +  ++      +  
Sbjct: 474 FLQSIYGLFGFTF-KLKLSTRP-----------------EKYLGDLETWNYAEEQLKSAM 515

Query: 240 DDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSL 296
                 +  + E   A Y    D+    + D+L    + +   ++      F      + 
Sbjct: 516 TKFKGKDWTIDEGDGAFYGPKIDI---TIADALKREFQCATIQLDYQAPINFKLEYMTNE 572

Query: 297 PMSATFKGA------------DGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDS 343
              A  + +             G+   V +    IG+  R +  +IE             
Sbjct: 573 KGQAVMEDSKNEGETKSNEPGPGRARPVVIHRAIIGSFERFLGILIEHFGGKWPFWISPR 632

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
                  +  +        D  E++   L     +V  D  G  +  +     L  +   
Sbjct: 633 QILIVPVMPAVN-------DYVEELQQILRGDKLNVDIDISGNTMQKKIRTGQLAQYNFI 685

Query: 404 VIVGSKFVSDSKVEIKHRLTGIRE----DMSLEEVINYASHRFSNNR 446
            +VG++      V I++R     +     + LEE            R
Sbjct: 686 FVVGAQEKESRSVNIRNRDDPATQHKGVMVPLEEARQKLRALRKERR 732


>gi|296877243|ref|ZP_06901283.1| proline--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
 gi|296431763|gb|EFH17570.1| proline--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
          Length = 616

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 107/279 (38%), Positives = 154/279 (55%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKGIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREGSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R G+    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGIDFKAIIGDGGAMGGKDSQEFMAVTPARTDLDRWVVLDKSVPSFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            +      L  +V        ++   +   L  +  E K
Sbjct: 241 QEEIKAELLKWMVSGEDTIAYSSESTYAANLEMATNEYK 279



 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ K V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGKGVLKFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNIKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  +I   L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 ASLALTNQIEESLVNKGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   ++  + ++   S
Sbjct: 593 IKATGDTIEVHADNLLETLS 612


>gi|328907347|gb|EGG27113.1| threonine--tRNA ligase [Propionibacterium sp. P08]
          Length = 684

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 68/455 (14%), Positives = 135/455 (29%), Gaps = 45/455 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   ++E  R D      +L L +    +   G+  + P G      +   +       G
Sbjct: 245 YQQRIKEAERRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGAMLRHLIEEHVVARHMEAG 303

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
            + +  P +    L+  SG    Y   M                 R  +       +  +
Sbjct: 304 FVFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEQGNVTRTGQEYYLKAMNCPM 363

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +    
Sbjct: 364 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTYCTREQAPGE 423

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    +L I    GL    +   +   G     +FI   +                 
Sbjct: 424 -IKKQIEFFLSILADFGLNDFYLELSTREGGSAKEEKFIGSDED-----------WQAAT 471

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            + +    +            A Y       + ++ D++    ++S    +         
Sbjct: 472 DTLDQVCRNTGLQLVSDPGGAAFYGPKV---SVQVKDAIGRTWQMSTIQYDFNQP----- 523

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG       + S  +G++     V+   + G   +W           
Sbjct: 524 ---ERFDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW------LSPVQ 574

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +   D   K    L   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 575 VRLVPVAEAFNDYVTKFAEVLESRGIRVETDLSSDRFGKKIRNASKEKVPFVLIAGGEDA 634

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
               V  + R       ++ +E +   +     +R
Sbjct: 635 EAGAVSFRLRDGSQVNGVARDETVRIIAAWNDEHR 669


>gi|325972766|ref|YP_004248957.1| prolyl-tRNA synthetase [Spirochaeta sp. Buddy]
 gi|324028004|gb|ADY14763.1| Prolyl-tRNA synthetase [Spirochaeta sp. Buddy]
          Length = 588

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 99/227 (43%), Positives = 135/227 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F   L+E P  A+   ++ +LR G I Q   GI+S LP G  A   +  IIR+E
Sbjct: 1   MRMSRLFSKTLREAPNGADSKGYEYLLRAGFIRQLGAGIFSLLPFGFNATKKIEQIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N  G  E+ +P +  AD+W E+GRY S  KEM R +DR  + M+   THEE +TD+ R 
Sbjct: 61  MNAIGGQEILMPLVNPADIWKETGRYYSIDKEMSRFSDRVGRDMVLAMTHEEAVTDLARG 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQIQ K+RD+ RPR G++R REF MKD+YSFD+  EG    Y   + +
Sbjct: 121 EIDSYKRLPLLVYQIQTKWRDDPRPRAGLIRVREFTMKDSYSFDVDQEGLDAQYAAHYKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RIF R GL  I + A+SG +GG +SHE++ L+  GE  +      
Sbjct: 181 YFRIFSRCGLPVIVVGADSGMMGGKISHEYMYLSSIGEDTIITCPSC 227



 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 61/191 (31%), Positives = 102/191 (53%), Gaps = 7/191 (3%)

Query: 257 AATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              +D+ +     S PE      S++G+EVG+IF   T+YS  M+ +++   G    V M
Sbjct: 385 GQVADIASAAAGYSCPECSKPLSSSKGVEVGNIFQLNTRYSESMNCSYQDEGGLRKPVIM 444

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           GSYGIG  R++A + E+  D +G+  P SVAP ++ L+++        +  E+IY +LS 
Sbjct: 445 GSYGIGVGRLLACLAENYSDEQGLSLPISVAPMQVHLVSLVKD----AEIGEQIYNKLSD 500

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMSLEE 433
            G +V +DD  E  G +FA ADL+G P+++ +G++ + + KVE+K R          L  
Sbjct: 501 AGIEVLYDDRKESAGVKFADADLIGLPIRITLGNRSLKEGKVEVKLRRNLEESFSFELAS 560

Query: 434 VINYASHRFSN 444
           V+       + 
Sbjct: 561 VVEETKALIAK 571


>gi|313837083|gb|EFS74797.1| threonyl-tRNA synthetase [Propionibacterium acnes HL037PA2]
 gi|314927888|gb|EFS91719.1| threonyl-tRNA synthetase [Propionibacterium acnes HL044PA1]
 gi|314971856|gb|EFT15954.1| threonyl-tRNA synthetase [Propionibacterium acnes HL037PA3]
          Length = 689

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 68/455 (14%), Positives = 135/455 (29%), Gaps = 45/455 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   ++E  R D      +L L +    +   G+  + P G      +   +       G
Sbjct: 250 YQQRIKEAERRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGAMLRHLIEEHVVARHMEAG 308

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
            + +  P +    L+  SG    Y   M                 R  +       +  +
Sbjct: 309 FVFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEQGNVTRTGQEYYLKAMNCPM 368

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +    
Sbjct: 369 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTYCTREQAPGE 428

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    +L I    GL    +   +   G     +FI   +                 
Sbjct: 429 -IKKQIEFFLSILADFGLNDFYLELSTREGGSAKEEKFIGSDED-----------WQAAT 476

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            + +    +            A Y       + ++ D++    ++S    +         
Sbjct: 477 DTLDQVCRNTGLQLVSDPGGAAFYGPKV---SVQVKDAIGRTWQMSTIQYDFNQP----- 528

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG       + S  +G++     V+   + G   +W           
Sbjct: 529 ---ERFDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW------LSPVQ 579

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +   D   K    L   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 580 VRLVPVAEAFNDYVTKFAEVLESRGIRVETDLSSDRFGKKIRNASKEKVPFVLIAGGEDA 639

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
               V  + R       ++ +E +   +     +R
Sbjct: 640 EAGAVSFRLRDGSQVNGVARDETVRIIAAWNDEHR 674


>gi|322697146|gb|EFY88929.1| threonyl-tRNA synthetase, putative [Metarhizium acridum CQMa 102]
          Length = 759

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 78/500 (15%), Positives = 159/500 (31%), Gaps = 86/500 (17%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  ++   + +   RD ++      L        S G   +LP G +  + + A++RE+
Sbjct: 287 MK--EWLTYLEEAKKRDHQLIGKNQKLFW--FSPLSPGSPFFLPHGTRIFNAIQAMLREQ 342

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR------------------------- 95
               G  E+  P +  A LW  SG +D Y ++M R                         
Sbjct: 343 YWMRGYDEVHSPLMYDAQLWKTSGHWDHYQEDMFRVPLKHTHGAAPDASAASGPDASKDA 402

Query: 96  ----LADRNDKA---------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
                 D  +               P +      +F S  +SYR+LP+      +  R+E
Sbjct: 403 NKPADKDGENAEVAKLEQERLFALKPMNCPGHALMFASEERSYRSLPWRVADFSVLHRNE 462

Query: 143 LRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                 G+ R R+F   DA+ F    + +     +    ++   + +      ++  + P
Sbjct: 463 ASGALTGLTRVRKFQQDDAHIFCTIDQVTDE--LRGLFKFMTHVYTMFGFPFKLKLSTRP 520

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATS 260
                                      D           +    + ++     A Y    
Sbjct: 521 -----------------DSYMGKLSDWDAAEDRLKKALQEFKGDDWVINPGDGAFYGPKI 563

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFG----TKYSLPMSATFKGAD------GKDH 310
           DV    + D+L    + +   ++      F     T  S    A  +G +      G   
Sbjct: 564 DV---TVHDALGREFQCATIQLDFQLPQNFNLLYRTNESTADRAKGEGEEEGDIPSGMAR 620

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    IG+      ++    +     WP  ++P ++ +I I    +   D   ++  
Sbjct: 621 PVMIHRAVIGSFERFMGILI---EHFAGKWPFWLSPRQVMVIPIMKDAE---DYAREVRD 674

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE--- 427
            L         D  G  +  +   A L  +   ++VG++ +    V I++R     +   
Sbjct: 675 ILHDAKLYADVDVSGNTLQKKIRAAQLAQYNFVMVVGAEEIEKRAVNIRNRDDPSSQQKG 734

Query: 428 -DMSLEEVINYASHRFSNNR 446
             + L++V+       +  R
Sbjct: 735 AMIDLDDVVKRLVELKAERR 754


>gi|319948489|ref|ZP_08022623.1| threonyl-tRNA synthetase [Dietzia cinnamea P4]
 gi|319437856|gb|EFV92842.1| threonyl-tRNA synthetase [Dietzia cinnamea P4]
          Length = 699

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 60/455 (13%), Positives = 129/455 (28%), Gaps = 49/455 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L +    +   G   + P G    + +           G
Sbjct: 271 YLDRLAEAEKRDHRRLGTELDLFS-FPDEIGSGFPVFHPRGGIIRNEMEQHSLRRHLAAG 329

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
              ++ P +   DL+ +S     Y + M                 +  +     P +  +
Sbjct: 330 YSLVNTPHVTKGDLFRKSQHLSWYSEGMFPPMVLDAEHDADGNETKPGQDYYVKPMNCPM 389

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              +F S  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +    
Sbjct: 390 HNLVFDSRGRSYRELPLRMFEFGTVYRYEKSGVIHGLTRARGFTQDDAHIYCTEEQMEGE 449

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
               +    + +    GL    +   +                    +     +  +   
Sbjct: 450 -IASVLSFIISLLRDYGLDDFYLELST----------------KDPEKYVGGDELWERAT 492

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +      +            A Y       + +  D++    ++S   ++    F    
Sbjct: 493 ETLRRVATNSGLELVPDPGGAAFYGPKI---SVQARDAIGRTWQMSTVQLD----FNLP- 544

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                   T+  ADG       +     G++    AV+   + G    W   V    I +
Sbjct: 545 ---ELFDLTYNAADGTKKRPVMIHRALFGSIERFFAVLLEHYAGLFPAWLAPVQVVGIPV 601

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                  +      E +   L   G     D   E++  +         P  ++ G + V
Sbjct: 602 A------EAHEKHLEDVIDELRGRGIRAELDTSDERMQKKIRNHTTGKVPFMLLAGDRDV 655

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
               V  +         +S    ++  ++  ++ R
Sbjct: 656 EAGAVSFRFPDGTQLNGVSRNAAMDKIAYWINSRR 690


>gi|302386675|ref|YP_003822497.1| threonyl-tRNA synthetase [Clostridium saccharolyticum WM1]
 gi|302197303|gb|ADL04874.1| threonyl-tRNA synthetase [Clostridium saccharolyticum WM1]
          Length = 653

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 70/435 (16%), Positives = 137/435 (31%), Gaps = 37/435 (8%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD       L +    +    +G+   +P G K +  +   I +E+ + G +    P + 
Sbjct: 239 RDHNKLGRDLEIFAT-VDVIGQGLPLLMPKGAKIVQTLQRWIEDEEEKRGYMRTKTPLMA 297

Query: 76  SADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
             DL++ S  +D Y + M      + +D+     P        +++   KSYR+LP  + 
Sbjct: 298 KKDLYIISDHWDHYKEGMFVLGNEETDDEVFALRPMTCPFQYYVYKQSQKSYRDLPCRYG 357

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           +    FR+E      G+ R R+F + + +     P+  +  +             LGL+ 
Sbjct: 358 ETSTLFRNEDSGEMHGLTRVRQFTISEGHLIVR-PDQIEEEFKGCVDLAKYCLTTLGLE- 415

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                      GD+++               + +  D          D I    +     
Sbjct: 416 -----------GDVTYRMSKWDPNNADHYLGTPEMWDEVEDMMRKILDHIGIQYTEAAGE 464

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D+  + ++      K  +   I            +     +F   DG     
Sbjct: 465 AAFYGPKLDIQAKNVY-----GKEDTMITI------QLDMFLAERFDMSFVDKDGTKKRP 513

Query: 313 QM-GSYGIGAMRVVAAVIESSHD-GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            +     +G      A +   ++                         +   +   K+ A
Sbjct: 514 YIIHRTSMGCYERTLAWLIEKYEGAFPTWLCPEQVRILPI-------SEKYHEYAGKVAA 566

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L + G     D+  E+IG +   A L   P  ++VG K   +  V ++ R  G      
Sbjct: 567 QLKENGILATVDERAEKIGYKIREARLSKLPYMLVVGQKEEEEGVVSVRSRFNGDEGQHP 626

Query: 431 LEEVINYASHRFSNN 445
           L   I+         
Sbjct: 627 LSGFIDDICREIRTK 641


>gi|302922168|ref|XP_003053410.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734351|gb|EEU47697.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 741

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 67/449 (14%), Positives = 137/449 (30%), Gaps = 41/449 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   R+          +     + S G   +LP G +  + +  +++ E  + G  E+  
Sbjct: 315 EAAKRNHRKIGQ--DQKLFFFDEVSPGSTFFLPHGVRIYNALMDLLKGEYRKRGFTEVMS 372

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +  +DLW  SG +  Y + M    D   +     P +      IF     SY++LP+ 
Sbjct: 373 PNVYKSDLWKISGHWGHYEENMFTF-DVEKERYGLKPMNCPGHCKIFAHSDVSYKDLPWR 431

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                +  R+E      G+ R R F   DA+ F    +         F     ++   G 
Sbjct: 432 MADFGVLHRNEFSGALSGLTRVRRFQQDDAHIFCTVDQIRDE-IESAFDFLSAVYGLFGF 490

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               ++  + P         I   D  E ++            +  +      +      
Sbjct: 491 SF-KLKLSTRPEKYVGD---IATWDIAEQKL----------QEALESFAKKTNAKWEFNP 536

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY---------SLPMSAT 301
              A Y    D+    L+D+L  + +     ++      F  +Y         S     +
Sbjct: 537 GDGAFYGPKIDI---TLYDALRRDHQCGTIQLDFNLPRRFKLRYVAGKDESGVSDGSDPS 593

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                G    V +    +G+   +  V+     GK   W        + ++         
Sbjct: 594 EDLPAGYSRPVMIHRAVLGSFERMFGVLAEHFAGKWPFWLSPRQILVVPVMP------AV 647

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  ++I     +    +  D        +     L  +    +VG++      V I++R
Sbjct: 648 NDYAKEIQQIFQEKELYIDVDLSSNTFQKKIRTGQLEQYNFIFVVGAEEAKSRTVNIRNR 707

Query: 422 LTGIRED----MSLEEVINYASHRFSNNR 446
                +     + ++E +          R
Sbjct: 708 DDQATQTKGELVPIDEALESLVKLKVERR 736


>gi|1464742|gb|AAB04939.1| threonyl-tRNA synthetase [Homo sapiens]
          Length = 712

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 70/443 (15%), Positives = 142/443 (32%), Gaps = 39/443 (8%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 294 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGVYIYNALIEFIRSE 351

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +    + +F  
Sbjct: 352 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHSLMFDH 410

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP          R+EL     G+ R R F   DA+ F    +           
Sbjct: 411 RPRSWRELPLRLADFGGLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 469

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 470 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 511

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 512 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 560

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            T+   DG+D    +  +      V   +   + +  G + P  ++P ++ ++ +     
Sbjct: 561 LTYVSHDGEDKKRPVIVHRAILGSVERMIAILTENYGGKLAPFWLSPRQVMVVPVGP--- 617

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C +  + +  +          D D G  +  +   A L  +   ++VG K      V I
Sbjct: 618 TCDEYAQNVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKITGTVNI 677

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R   +  + ++ E I      
Sbjct: 678 RTRDNKVHGERTISETIERLQQL 700


>gi|322392576|ref|ZP_08066036.1| proline--tRNA ligase [Streptococcus peroris ATCC 700780]
 gi|321144568|gb|EFX39969.1| proline--tRNA ligase [Streptococcus peroris ATCC 700780]
          Length = 617

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 107/257 (41%), Positives = 151/257 (58%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM VP L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLVPALLSADLWRESGRYETYGEDLYKLKNRESSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG+ S EF+      +D     V          IPSE 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGEDSQEFMAITPARSDLDRWVVLDKSVASFDEIPSEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  +V    
Sbjct: 241 QEEIKAELLKWMVSGED 257



 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 17/206 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M       +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGTDVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                   I   L   G +V  DD  E++G +F+ +DL+G P+++ VG K  ++  VE+K
Sbjct: 534 ASLALTNHIEEALVNKGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            + TG   ++  + ++       +N 
Sbjct: 593 IKATGDTIEVHADNLLETL-EILANK 617


>gi|315635814|ref|ZP_07891076.1| proline--tRNA ligase [Arcobacter butzleri JV22]
 gi|315479793|gb|EFU70464.1| proline--tRNA ligase [Arcobacter butzleri JV22]
          Length = 568

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 99/235 (42%), Positives = 140/235 (59%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F+P  +E P DA + SH+ ++R G I Q   GIY ++PLG+  L+ +  I++EE
Sbjct: 1   MKFSKMFIPTTKETPNDATLPSHQYLVRGGFIAQTGAGIYDFMPLGKIVLEKIRTIVKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+    +    LW ESGR  + G EMLR  DR +   +  PT+EE + ++ ++
Sbjct: 61  MDEAGANEVQFGFVTPLTLWQESGRATTMGAEMLRFKDRKNGEFVLSPTNEEAVVNMVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY++LP   YQI  KFRDE RPRFG+MR REFLMKD YSF  + E     +N M  +
Sbjct: 121 RITSYKDLPLHLYQINTKFRDEARPRFGLMRGREFLMKDGYSFHSSEEDLVREFNLMEAT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y +I+ +LGL    + A+SG IGG  S EF V+AD+GE  +       D+    E
Sbjct: 181 YKKIYTKLGLDFRVVAADSGAIGGSGSKEFHVIADSGEDTLVVCDSC-DYGANIE 234



 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 95/180 (52%), Gaps = 2/180 (1%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           E    +    K    +GIE GHIF  GTKYS  M+A F   +GK     MG YGIG  R+
Sbjct: 390 EGDICACCGGKLSYRKGIEAGHIFQLGTKYSSAMNANFLDENGKAKPFIMGCYGIGVSRL 449

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           VAAVIE +HD KG +W  + APF + +I   +  +      E++Y++L + G     DD 
Sbjct: 450 VAAVIEQNHDDKGCVWTKATAPFMVDIIVSNSKKEEEAKVGEELYSKLKQAGISTILDDR 509

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              + G + +  +LLGFP  V++G K + D  VEI  R T  + D+ ++EVI+       
Sbjct: 510 INARFGFKMSDFELLGFPYAVVIGKK-LEDGLVEIVDRKTLEKIDLKVDEVISKILELVK 568


>gi|154486903|ref|ZP_02028310.1| hypothetical protein BIFADO_00736 [Bifidobacterium adolescentis
           L2-32]
 gi|154084766|gb|EDN83811.1| hypothetical protein BIFADO_00736 [Bifidobacterium adolescentis
           L2-32]
          Length = 611

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 104/284 (36%), Positives = 154/284 (54%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE 
Sbjct: 6   RMSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLNVLNKIENIIREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
               A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +  
Sbjct: 66  ASIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDL 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +Y
Sbjct: 126 YSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF+RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +  T   +
Sbjct: 186 ERIFNRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEALTTPEPE 245

Query: 242 II--SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
            I  +     E+   P AAT D   E    + P +     +  +
Sbjct: 246 AIDFTATPAAEKRPTPDAATIDKMVEFANANHPRSDGRDWQASD 289



 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 4/189 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+        RG+E+G +F  G KYS  +       +GK   V MG
Sbjct: 420 GTVEAVQVRHGDMSPDGSGPLSFERGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMG 479

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+A + E+ HD KG+ W  +V       +     D    +A E++   L   
Sbjct: 480 SYGIGVSRVMACIAETHHDEKGLAW-PAVIAPAQVHVVATGKDAAAFEAAEQLIGELEAK 538

Query: 376 GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD  +   G +F  A+L+G P+  + G   V++  +E++ R     E + + + 
Sbjct: 539 GIEVIFDDRKKVSPGVKFKDAELIGVPIIAVAGRDTVNNGTIEVRDRNGENAEAVPVADA 598

Query: 435 INYASHRFS 443
               + R +
Sbjct: 599 AQAIADRVA 607


>gi|238924616|ref|YP_002938132.1| threonyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
 gi|238876291|gb|ACR75998.1| threonyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
          Length = 676

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 66/444 (14%), Positives = 148/444 (33%), Gaps = 38/444 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT-GAI 67
            + +   RD      ++ L T  +    +G+   +P G K +  +   I + +++  G +
Sbjct: 251 RMEEAKKRDHNKLGREMELFTT-VDVIGQGLPLMMPKGTKMIMKLQRWIEDLEDKEWGYV 309

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEML----RLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               P +  +DL+  SG +D Y   M        D  ++ M   P        ++++   
Sbjct: 310 RTKTPLMAKSDLYKISGHWDHYLDGMFVLGDPEKDGEEEVMALRPMTCPFQYYVYKAKQH 369

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP+   +    FR+E      G+ R R+F + + ++     +  +           
Sbjct: 370 SYRDLPYRMGETSTLFRNEDSGEMHGLTRVRQFTISEGHNVIRPDQCEEEL--------- 420

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
               +          +   +  D+++           +     ++ +           + 
Sbjct: 421 ----KACFNLNRYVLKVLGLENDVTYRLSKWDPKNTEKYLGDDEYWNSTQEVLRNILIEE 476

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  +   A Y    D+  + ++      K  +   I            +      +
Sbjct: 477 NVPFVEADGEAAFYGPKIDIQAKNVY-----GKEDTMVTI------QLDCAIAENFDLYY 525

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +G      +     +G      A +   + GK   W   + P ++ ++ I    +  
Sbjct: 526 IDQNGDKIRPYIIHRTSLGCYERTLAWLIEHYAGKFPTW---LCPEQVRVLPI---SEKY 579

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +K+   L +   DV  D+  E+IG +   A +   P  ++VG+   +D  V ++ R
Sbjct: 580 ADYAKKVADELKRNDVDVTVDNRAEKIGYKIREARMDKLPYMLVVGADEEADGTVSVRSR 639

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G      L + I+         
Sbjct: 640 FEGNEGVKPLSDFIDQICKEIRTK 663


>gi|322377188|ref|ZP_08051680.1| proline--tRNA ligase [Streptococcus sp. M334]
 gi|321281901|gb|EFX58909.1| proline--tRNA ligase [Streptococcus sp. M334]
          Length = 617

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 105/257 (40%), Positives = 148/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  +V    
Sbjct: 241 QEEIKAELLKWMVSGED 257



 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + ++        + +
Sbjct: 593 IKATGDTIEVHADNLLETL--EILSKK 617


>gi|307709960|ref|ZP_07646407.1| prolyl-tRNA synthetase [Streptococcus mitis SK564]
 gi|307619331|gb|EFN98460.1| prolyl-tRNA synthetase [Streptococcus mitis SK564]
          Length = 617

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 105/257 (40%), Positives = 148/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  +V    
Sbjct: 241 QEEIKAELLKWMVSGED 257



 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + ++        + +
Sbjct: 593 IKATGDTIEVHADNLLETL--EILSKK 617


>gi|307708104|ref|ZP_07644572.1| prolyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307615889|gb|EFN95094.1| prolyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
          Length = 617

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 105/257 (40%), Positives = 148/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSVTSFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  +V    
Sbjct: 241 QEEIKAELLKWMVSGED 257



 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D 
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDD 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + ++        + +
Sbjct: 593 IKATGDTIEVHADNLLETL--EILSKK 617


>gi|289168683|ref|YP_003446952.1| prolyl-tRNA synthetase [Streptococcus mitis B6]
 gi|288908250|emb|CBJ23092.1| prolyl-tRNA synthetase [Streptococcus mitis B6]
          Length = 617

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 105/257 (40%), Positives = 148/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  +V    
Sbjct: 241 QEEIKAELLKWMVSGED 257



 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + ++        + +
Sbjct: 593 IKATGDTIEVHADNLLETL--EILSKK 617


>gi|296124433|ref|YP_003632211.1| threonyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
 gi|296016773|gb|ADG70012.1| threonyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
          Length = 736

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 64/483 (13%), Positives = 119/483 (24%), Gaps = 68/483 (14%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD  +   +L L + +  +   G+  WLP G      +   I+ E  + G   +  
Sbjct: 252 EAKRRDHRVLGKQLNLFS-ISPEVGAGLCLWLPKGATVRALLEEFIKGELLKRGYQPVYT 310

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRN 127
           P +   +L+  SG +  Y          +D             +                
Sbjct: 311 PHIGRVELYETSGHFPYYRDSQFTPLYGHDGGQLIDFWIRKLQDN-AISEADEKSLLASA 369

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
                   +         +  V+R+ E   +      +        Y  M  SY  +  R
Sbjct: 370 KILGVEIPEYAAASGNPAKIEVLRTWEKQQERYLLKPMNCPHHAQIYKSMQRSYRDLPVR 429

Query: 188 ---LGLKSIPMR-----------------AESGPIGGDLSHEFIVL-------------- 213
               G      +                 A        +  EF                 
Sbjct: 430 LAEFGTVYRHEQSGELNGMLRVRGLTQDDAHLFCTPEQVEEEFRATLQLVQFVLASVGLE 489

Query: 214 --------ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                    D    +   S++       S      ++    +  E   A Y   +D    
Sbjct: 490 DYRVQLSLRDPKSDKYVGSEENWQRAEASLRGVLTELNLPFTAREGEAAFYGPKADFM-- 547

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMR 323
            + D +    ++    ++                  + GAD + H   M          R
Sbjct: 548 -VKDCIGREWQLGTVQLDYNLP--------ERFQLEYVGADNQAHRPVMIHRAPFGSMER 598

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               +IE       +                            ++       G  V  D 
Sbjct: 599 FTGMLIEHFAGAFPLWLAPEQVRVLSI-------SDKFEGYAREVEREFRAAGFRVTTDL 651

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G +I  +   A +   P  ++VG K   +  V I+ R+ G    + L E I       +
Sbjct: 652 RGAKINGKIRDAQIELIPYMLVVGGKDQENRTVSIRDRIEGDLGAVPLAEAITRLQQEVT 711

Query: 444 NNR 446
             R
Sbjct: 712 EKR 714


>gi|307710999|ref|ZP_07647421.1| prolyl-tRNA synthetase [Streptococcus mitis SK321]
 gi|307616961|gb|EFN96139.1| prolyl-tRNA synthetase [Streptococcus mitis SK321]
          Length = 617

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 105/257 (40%), Positives = 148/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  +V    
Sbjct: 241 QEEIKAELLKWMVSGED 257



 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + ++        + +
Sbjct: 593 IKATGDTIEVHADNLLETL--EILSKK 617


>gi|307128591|ref|YP_003880621.1| uracil phosphoribosyltransferase [Candidatus Sulcia muelleri CARI]
 gi|306483053|gb|ADM89923.1| uracil phosphoribosyltransferase [Candidatus Sulcia muelleri CARI]
          Length = 640

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 149/442 (33%), Gaps = 34/442 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           KYFL   +   RD      KL L T   +   +G+  WLP G      +   +     + 
Sbjct: 228 KYFLKKKESKKRDHRKIGKKLELFT-FSNIVGQGLPIWLPKGFLLKKKIENFLLNLNQKI 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G   ++ P + +  L+  SG ++ Y +      ++   ++  +    +     +I+    
Sbjct: 287 GYEMVTTPHIANKKLYNISGHWEKYYENSFNTFISPNKEEQFLLKSMNCPHHCEIYNYKK 346

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY++LP  F +    +R E      G+ R R F   DA+ F    +  +     +    
Sbjct: 347 FSYKDLPKRFAEFGTVYRYEKSGELHGLTRVRSFTQDDAHIFCTKEQLIEEL-KSVIDMI 405

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + IF +LG      +                       +   SK+  +           +
Sbjct: 406 IFIFQKLGFSKYKAQISLRDKKKK-------------YKYIGSKEHWEKSEKDLIKATKE 452

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I     A Y    D     + D L  N ++    ++      F   Y+      
Sbjct: 453 KKIDTYIKYGEAAFYGPKLDFM---VQDILGRNWQLGTVQVDYNLPERFNLFYTN----- 504

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               +     + +    +G++    A++  + +G   +W   +    I ++      +  
Sbjct: 505 --NKNKLIRPIMIHRATLGSLERFIAILIENTEGNFPLWLSPIPIRIIPIL------EKN 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +KI   L ++    F D   E +  +   A++   PL +++G K    + V I+  
Sbjct: 557 FFYSKKILNLLMQLEIQSFIDSRIESLSKKIIDAEIDKIPLILVLGDKEEKLNSVSIRSY 616

Query: 422 LTGIREDMSLEEVINYASHRFS 443
                  +SLE  IN+     +
Sbjct: 617 KEKKIIFLSLERFINFLKKEIN 638


>gi|303310925|ref|XP_003065474.1| threonyl-tRNA synthetase, cytoplasmic, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240105136|gb|EER23329.1| threonyl-tRNA synthetase, cytoplasmic, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320034634|gb|EFW16577.1| threonyl-tRNA synthetase [Coccidioides posadasii str. Silveira]
          Length = 757

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 75/472 (15%), Positives = 134/472 (28%), Gaps = 64/472 (13%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   R+      +  L      + S G    LP G K  + +  ++R E  + G 
Sbjct: 312 LKFLEEAEKRNHLKIGKEQELF--FFDEVSPGCPFLLPNGTKIFNALQKLLRTEYRKRGY 369

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG ++ Y  +M +LA    +     P +      +F    +SYR
Sbjct: 370 QEVQSPNMYDVGLWRTSGHWNHYKDDMFKLA-VEKREWALKPMNCPGHCIMFNHRERSYR 428

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP       +  R+E      G+ R R+F   D + F    + ++     +F     I+
Sbjct: 429 ELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCTEDQITQE-IEGLFDFLRAIY 487

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G     ++  + P       E    A+    +        D                
Sbjct: 488 GLFGFSF-KLKLSTRPEKYLGKLETWDFAEAQLKEALTRFKGSD---------------- 530

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT---- 301
             I E   A Y    D+    + D+L    + +   ++      F  +Y     A     
Sbjct: 531 WEIDEGDGAFYGPKIDI---TIQDALKREFQCATIQLDYQLPQNFKLEYMTNEIAKPKAP 587

Query: 302 -----------------------FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                                    G       +   +      R    +IE        
Sbjct: 588 EPKKEESGPREGGDSKAADSDDGVPGPGRARPVMIHRAIIGSFERFFGILIEHFGGKWPF 647

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                       +           D  E++   L     +V  D  G  +  +     L 
Sbjct: 648 WLSPRQILIVPVMP-------AVYDYVEELQGILRGDKLNVDIDVSGNTLQKKIRNGQLA 700

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
            +    +VG++      V I++R     +     + L E            R
Sbjct: 701 QYNFIFVVGAQEKETRTVNIRNRDDPSSQAKGSLVPLNEAREKLRALRKERR 752


>gi|213405351|ref|XP_002173447.1| prolyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
 gi|212001494|gb|EEB07154.1| prolyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
          Length = 418

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 134/440 (30%), Positives = 213/440 (48%), Gaps = 45/440 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASH--KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R S+     L+E+ ++  +  +   L++  G + Q S G++  LPLG + +DN++ I+ +
Sbjct: 8   RASQLL---LKESGKNYVVPKNVSSLLIDQGYVQQSSSGVFQLLPLGLRVMDNISNIVHQ 64

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E    GAI +S+ +L +  +W +S R++  G EML + DR  +     PTHEE MT +  
Sbjct: 65  ELAGLGAIRVSLASLSAKAVWQQSKRWEKMGSEMLHIRDRAQRDYCLCPTHEEEMTRMVA 124

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           +   S + LP + YQI  K+RDE RPR G++R++EFLM D Y++D T E ++ +Y ++F 
Sbjct: 125 NVFHSSKQLPISVYQIGSKYRDEARPRGGLLRAKEFLMMDLYTYDATKEAAEKTYERVFQ 184

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           S+ RIF  +GL      A+ G +GG  SHEF  L + GE  V      +           
Sbjct: 185 SFHRIFRAIGLPYTVAEAQQGTMGGAYSHEFHYLNEVGEDVVLRCPQCL----------- 233

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                            A T   H           + +  + IEVGH F  G  Y+ P  
Sbjct: 234 ---------------HAANTDAYHGSIDKCVHCGGELLQQKCIEVGHTFNLGQTYTRPFQ 278

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                       + M SYGIG  R++AAV   +HD KG++WP ++AP+KI ++   A D 
Sbjct: 279 LCLSN----GDALYMNSYGIGISRLLAAVAHMTHDEKGLVWPTAIAPWKIIILP--ASDS 332

Query: 360 VCRDACEKIYARLS----KVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              D  E +Y  L+            DD G +  G +   A+L+GFP  + VG  +  D 
Sbjct: 333 KIPD-AEALYDSLAQTFGANNI--LLDDRGHKSYGRKIRDAELIGFPFIITVGESYTRDG 389

Query: 415 KVEIKHRLTGIREDMSLEEV 434
             ++  R +  R  +   ++
Sbjct: 390 SFDVLARASNTRYKLKAAQL 409


>gi|229825871|ref|ZP_04451940.1| hypothetical protein GCWU000182_01235 [Abiotrophia defectiva ATCC
           49176]
 gi|229789891|gb|EEP26005.1| hypothetical protein GCWU000182_01235 [Abiotrophia defectiva ATCC
           49176]
          Length = 604

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 76/466 (16%), Positives = 152/466 (32%), Gaps = 59/466 (12%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L +++E   RD +    KL L   M ++ + G+  WLP G +    +    R+   +
Sbjct: 170 KAHLNLIREALERDHKKLGPKLDLF--MFNETAPGMPYWLPRGWRLYQELINFWRKIHVK 227

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEML---------------RLADRNDKAMIYGP 108
            G  E+S P + +  LW+ SG +  Y   M                 +   +D      P
Sbjct: 228 HGYQEISAPIINNRKLWLISGHWAHYVNNMFIIPGFDDDLTQRTLQNIELDSDSTFAAKP 287

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTP 167
            +       ++  + SY+ LP  + +I +  R E   +  G+ R +EF   D ++F +  
Sbjct: 288 MNCPNAMLTYKRTVHSYKELPIRYNEIDVIHRKEKSGQLNGLFRVQEFRQDDDHTFVM-E 346

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
              +     +     +I+   G+        + P       E    A+    ++   K  
Sbjct: 347 SQIEEEIADVMEVADQIYSTFGITY-RAELSTRPEDFMGDIEVWDRAEAALKKILDKKYG 405

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                               + E   A Y    D+   ++ D+L    +     ++    
Sbjct: 406 E---------------GGYEVNEGDGAFYGPKIDL---QMKDALGREWQCGTIQLDFQLP 447

Query: 288 FYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
             F          T++ +DG       +     G+      ++  ++ G+   W      
Sbjct: 448 HNF--------ELTYQDSDGTIKEPVVIHRAIFGSFERFIGILIENYKGEFPFW------ 493

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQV 404
                + I        +  ++I   L ++G  V   +DD    +  +     L+  P  +
Sbjct: 494 ISPYQVAIVPIRTEHNEYAKEIEDALYEMGIRVEANYDDKN--MNEKIKGFKLMKDPYII 551

Query: 405 IVGSKFVSDSKVEIKHRLTGIR-EDMSLEEVINYASHRFSNNRPVL 449
           +VG K   +  V I  R    +   + L+                L
Sbjct: 552 VVGDKEKEERTVSITVRGQKQQMHGVPLDTFYKMIRKLQDTKAQEL 597


>gi|116495061|ref|YP_806795.1| prolyl-tRNA synthetase [Lactobacillus casei ATCC 334]
 gi|122263522|sp|Q038L9|SYP_LACC3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116105211|gb|ABJ70353.1| Prolyl-tRNA synthetase [Lactobacillus casei ATCC 334]
 gi|327382602|gb|AEA54078.1| Prolyl-tRNA synthetase [Lactobacillus casei LC2W]
 gi|327385800|gb|AEA57274.1| Prolyl-tRNA synthetase [Lactobacillus casei BD-II]
          Length = 575

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 111/281 (39%), Positives = 161/281 (57%), Gaps = 7/281 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E
Sbjct: 1   MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQIQAGVYAYLPLAERVLARIEAIIDDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+
Sbjct: 61  MTKIDAVKMKMPVLLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +
Sbjct: 121 ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLDTIYRQMEHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL+   +  + G +GG  S EF  +AD GE  +  S    D+    E     
Sbjct: 181 YTNIFDRLGLRYRSIIGDGGAMGGKDSKEFSAIADIGEDTIVYSDS-SDYAANLE--MAT 237

Query: 241 DIISLNSIVEQWTAPYAAT----SDVHNEKLFDSLPENKRV 277
            +      VE+  A           +     F  +PE K +
Sbjct: 238 SMALPKQGVEEQAALEPVDTKDAKTIAEVAEFLKVPEKKLI 278



 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 3/182 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+      +  P+ + V    RGIE+GHIF  GT+Y+  M A F   +G+   + MGSY
Sbjct: 382 ADIRFVTEGEVSPDGQGVLKFTRGIEIGHIFKLGTRYTETMGANFLDENGRSQPIIMGSY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A+ E   D  G++WP ++APF I LI +    +  +     I   L   G 
Sbjct: 442 GIGVSRLLSAIAEQQADEHGLVWPTTIAPFDIHLIPVNLKREEQKSLTASIETMLEVAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  DD  E+ G +FA +DL+G PL+V VG K V +  VE+K R TG   ++  EE+I+ 
Sbjct: 502 SVLVDDRNERPGVKFADSDLIGVPLRVTVGKKAVDE-IVELKLRKTGETIEVKKEELISS 560

Query: 438 AS 439
             
Sbjct: 561 IK 562


>gi|227534928|ref|ZP_03964977.1| prolyl-tRNA synthetase (proline--tRNA ligase) (ProRS)
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187684|gb|EEI67751.1| prolyl-tRNA synthetase (proline--tRNA ligase) (ProRS)
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 575

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 109/279 (39%), Positives = 159/279 (56%), Gaps = 3/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E
Sbjct: 1   MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQIQAGVYAYLPLAERVLARIEAIIDDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+
Sbjct: 61  MTKIDAVKMKMPVLLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +
Sbjct: 121 ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLDTIYRQMEHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL+   +  + G +GG  S EF  +AD GE  +  S    D+    E     
Sbjct: 181 YTNIFDRLGLRYRSIIGDGGAMGGKDSKEFSAIADIGEDTIVYSDS-SDYAANLEMATSM 239

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPENKRV 277
            +       +    P        +     F  +PE K +
Sbjct: 240 ALPKQGVEEKAALEPVDTKDAKTIAEVAEFLKVPEKKLI 278



 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 3/182 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+      +  P+ + V    RGIE+GHIF  GT+Y+  M A F   +G+   + MGSY
Sbjct: 382 ADIRFVTEGEVSPDGQGVLKFTRGIEIGHIFKLGTRYTETMGANFLDENGRSQPIIMGSY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A+ E   D  G++WP ++APF I LI +    +  +     I   L   G 
Sbjct: 442 GIGVSRLLSAIAEQQADEHGLVWPTTIAPFDIHLIPVNLKREEQKSLTASIETMLEVAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  DD  E+ G +FA +DL+G PL+V VG K V +  VE+K R TG   ++  EE+I+ 
Sbjct: 502 SVLVDDRNERPGVKFADSDLIGVPLRVTVGKKAVDE-IVELKLRKTGETIEVKKEELISS 560

Query: 438 AS 439
             
Sbjct: 561 IK 562


>gi|291525280|emb|CBK90867.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Eubacterium
           rectale DSM 17629]
 gi|291529262|emb|CBK94848.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Eubacterium
           rectale M104/1]
          Length = 657

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 64/444 (14%), Positives = 143/444 (32%), Gaps = 38/444 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT-GAI 67
            + +   RD      ++ L T  +    +G+   +P G K +  +   I + +++  G +
Sbjct: 232 RMEEAKKRDHNKLGREMELFTT-VDVIGQGLPLMMPKGTKMIMKLQRWIEDLEDKEWGYV 290

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEML----RLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               P +  +DL+  SG +D Y   M        D  ++ M   P        ++++   
Sbjct: 291 RTKTPLMAKSDLYKISGHWDHYLDGMFVLGDPEKDGEEEVMALRPMTCPFQYYVYKAKQH 350

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP+   +    FR+E      G+ R R+F + + ++     +  +           
Sbjct: 351 SYRDLPYRMGETSTLFRNEDSGEMHGLTRVRQFTISEGHNVIRPDQCEEEL--------- 401

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
               +          +   +  D+++           +     ++ +           + 
Sbjct: 402 ----KACFNLNRYVLKVLGLENDVTYRLSKWDPKNTEKYLGDDEYWNSTQEVLRNILIEE 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  +   A Y    D+  + ++      K  +   I            +      +
Sbjct: 458 NVPFVEADGEAAFYGPKIDIQAKNVY-----GKEDTMVTI------QLDCAIAENFDLYY 506

Query: 303 KGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +G      +     +G      A +   + GK   W        + +       +  
Sbjct: 507 IDQNGDKIRPYIIHRTSLGCYERTLAWLIEHYAGKFPTWLCPEQVRVLPI------SEKY 560

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  +K+   L +   DV  D+  E+IG +   A +   P  ++VG+   +D  V ++ R
Sbjct: 561 ADYAKKVADELKRNDVDVTVDNRAEKIGYKIREARMDKLPYMLVVGADEEADGTVSVRSR 620

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G      L + I+         
Sbjct: 621 FEGNEGVKPLSDFIDQICKEIRTK 644


>gi|147835149|emb|CAN65674.1| hypothetical protein VITISV_002009 [Vitis vinifera]
          Length = 1260

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 129/416 (31%), Gaps = 57/416 (13%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   +E  R D       L L +  I  +   G+  W P G      +    ++   
Sbjct: 269 KAYLHFKEEAKRRDHRRLGQDLDLFS--IQDEAGGGLVFWHPKGAIVRHIIEDSWKKIHI 326

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                 +  P +  ADLW  SG  D Y + M       D+     P +      I++  +
Sbjct: 327 EHXYDLLYTPHVARADLWKTSGHLDFYRENMYSQITIEDELYQLRPMNCPYHILIYKRKL 386

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+ P    ++   +  EL     G+ R R F   DA+ F L  +        +    
Sbjct: 387 HSYRDFPIRVAELGTVYXYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDE-IRGVLDLT 445

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I  + G     +   + P                  +   + D  +    +     DD
Sbjct: 446 EEILLQFGFSKYEVNLSTRP-----------------EKAVGADDIWEKATSALRDALDD 488

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I E   A Y    D+   K+ D+L    + S                       
Sbjct: 489 KGWSYRIDEGGGAFYGPKIDL---KIEDALGRKWQCSTIQ-------------------- 525

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 K   + +    +G++     V+    +     +P  ++P +  ++ +       
Sbjct: 526 ----AKKQRPIMIHRAVLGSLERFFGVLI---EHYAGDFPLWLSPIQARVLPVT---DTQ 575

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            + C ++  +L   G        GE++      ++    PL  +VG K V    V 
Sbjct: 576 LEYCNEVTNKLKANGIRAEV-CHGERLPKLIRNSEKQRIPLMAVVGPKEVETQTVT 630


>gi|119499848|ref|XP_001266681.1| threonyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181]
 gi|119414846|gb|EAW24784.1| threonyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181]
          Length = 737

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 76/461 (16%), Positives = 144/461 (31%), Gaps = 42/461 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ +  L  L+E   R+         L      + S G    LP G K  + + A++R E
Sbjct: 298 KQMQEHLKFLEEAEKRNHLRIGKDQELF--FFDEVSPGCPFLLPNGTKIFNALQALLRAE 355

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W  SG +  Y  +M +L D   +     P +      +F  
Sbjct: 356 YRKRGYQEVQTPNMYDVGIWKRSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHFVLFGH 414

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    + +      +F 
Sbjct: 415 RERSYRELPLRIADFGVLHRNEASGALSGLTRVRKFQQDDTHIFCTQDQIASE-IEGLFD 473

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G     ++  + P                  +     +  ++      +  
Sbjct: 474 FLQSIYGLFGFTF-KLKLSTRP-----------------EKYLGELETWNYAEEQLKSAM 515

Query: 240 DDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSL 296
                 +  + E   A Y    D+    + D+L    + +   ++      F      + 
Sbjct: 516 TKFKGKDWTIDEGDGAFYGPKIDI---TIADALKREFQCATIQLDYQAPINFKLEYMTNE 572

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRV---VAAVIESSHDGKGIIWPDSVAPFKISLIN 353
              A        +   +    G G  R      A+I S     GI+       +   +  
Sbjct: 573 KGQA-VMEESKTEGETKSNEPGPGRARPVVIHRAIIGSFERFLGILIEHFGGKWPFWISP 631

Query: 354 ----IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
               I        D  E++   L     +V  D  G  +  +     L  +    +VG++
Sbjct: 632 RQILIVPVMPAVNDYVEELQQILRGDKLNVDIDISGNTMQKKIRTGQLAQYNFIFVVGAQ 691

Query: 410 FVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
                 V I++R     ++    + LEE            R
Sbjct: 692 EKESRSVNIRNRDDPATQNKGVMVPLEEARQKLRALRKERR 732


>gi|57242133|ref|ZP_00370073.1| prolyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
 gi|57017325|gb|EAL54106.1| prolyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
          Length = 568

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 114/358 (31%), Positives = 167/358 (46%), Gaps = 14/358 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+++ P  +E P+DA + SH  + R G I Q+  G+Y++LPLG+     +  II+EE
Sbjct: 1   MKFSQFYAPTFKEAPKDATLPSHIFLTRAGFIEQNGSGLYNFLPLGKMVYSKIENIIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E S+     A  W ESGRY+ +GKE+LR  DR +   + GPTHEE M ++ ++
Sbjct: 61  MDKAGALETSLSFTTPASFWQESGRYNVFGKELLRFKDRKENDFVLGPTHEEAMLNVVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REF+MKDAYSF    E     +  M  +
Sbjct: 121 KITSYKQLPLNLYQIGLKFRDEARPRFGLLRCREFVMKDAYSFHKDEEDLTREFENMQGT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  RL L    + A+SG IGG  S EF+VLA  GE  +       D+    E     
Sbjct: 181 YSKILKRLELDFRIVEADSGAIGGSGSKEFMVLAQNGEDDILLCSHC-DYAANIEAA--- 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                    E+  A +A+     + K    L           E   I  F T  ++   A
Sbjct: 237 KRAKKTCEKERPEANFASKFHTPDVKTIKGL----------AEFFKIDSFYTIKAVVKKA 286

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++       +   G   +   +   A                       +  I   +
Sbjct: 287 LYENETKLVAFFVRGCDDLQETKAQNACKALELVDADEEELREAGLKPGFIGFINLKN 344



 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 6/232 (2%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---PYAATSDVHNEKLFDSLP 272
            G   +     ++D  +  E         ++                 D+   K  D   
Sbjct: 337 IGFINLKNVDFYIDNELKDEKQMIMGANEIDYHFVGIDVVNLNEERFKDLVEVKEGDCCA 396

Query: 273 EN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +   K   ++GIEVGHIF  GTKYS  M ATF   +GK     MG YG+G  R+VA  +E
Sbjct: 397 KCGAKLTKSKGIEVGHIFKLGTKYSAAMQATFLDENGKAKPFVMGCYGMGVSRLVAVAVE 456

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +S D +GI+W ++++PFK+ +I     D+   +    +Y  L K+G +V  DD  E+ G 
Sbjct: 457 ASFDERGIVWQEALSPFKLVIILSNIKDEKALNLGISLYEDLRKLGINVLLDDRNERYGV 516

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +    +L+GF   +I+G K + ++++E+  R    +  +  +  +       
Sbjct: 517 KMNDFELMGFNYALIIG-KSLENNELELVKRKDLSKIKLKADTALIELKKVL 567


>gi|307103531|gb|EFN51790.1| hypothetical protein CHLNCDRAFT_56367 [Chlorella variabilis]
          Length = 594

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 69/438 (15%), Positives = 138/438 (31%), Gaps = 36/438 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            +   RD      +L L +  I++    G+  W P G      V    +    + G   +
Sbjct: 190 EEAALRDHRRLGQELDLFS--INEACGGGLVFWHPKGAMVRHLVEDFWKSIHLQYGYHLL 247

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P +   DLW  SG +D Y   M    D         P +      I++    SYR+LP
Sbjct: 248 FTPHIAKVDLWKTSGHFDFYRDSMFNQMD-------LKPMNCPFHITIYKQGYYSYRDLP 300

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
             + ++   +R E             L +D       P   +     +      +  + G
Sbjct: 301 IKWAELGTVYRYERSGTMHG------LFRDDAHIFCLPTQIEAEILGVLDLTELLLSQFG 354

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                   +  P          V   T   +   S +  D    +            +  
Sbjct: 355 FHDFEASCKRKPPPRPC---LQVNLSTRPDKFVGSPEIWDQAEHALKAALQRKGWAFAED 411

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+   K+ D++    + S   ++    F    ++ +        A+ K+
Sbjct: 412 VGGGAFYGPKIDI---KICDAIGRKWQCSTVQLD----FNLPERFDMFY---ISDANIKE 461

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             + +    +G++     ++    +     +P  +AP +  L+ +             + 
Sbjct: 462 RPIMIHRAILGSLERFMGILI---ENYAGAFPLWLAPVQCRLVPVN---DAVMGYVSGVA 515

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L   G  V     G  +G     A+    P+  +VG +  S   V ++    G    M
Sbjct: 516 QALQAAGLRVEV-SSGLSVGKAIRAAEKDKIPVMCVVGQREASAGTVAVRTYSHGDVGCM 574

Query: 430 SLEEVINYASHRFSNNRP 447
            +E+++   +   +N +P
Sbjct: 575 LVEDLVERMAKASANKQP 592


>gi|301066624|ref|YP_003788647.1| prolyl-tRNA synthetase [Lactobacillus casei str. Zhang]
 gi|300439031|gb|ADK18797.1| Prolyl-tRNA synthetase [Lactobacillus casei str. Zhang]
          Length = 575

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 111/281 (39%), Positives = 161/281 (57%), Gaps = 7/281 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E
Sbjct: 1   MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQIQAGVYAYLPLAERVLARIEAIIDDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+
Sbjct: 61  MTKIDAVKMKMPVLLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +
Sbjct: 121 ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLDTIYRQMEHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL+   +  + G +GG  S EF  +AD GE  +  S    D+    E     
Sbjct: 181 YTNIFDRLGLRYRSIIGDGGAMGGKDSKEFSAIADIGEDTIVYSDS-SDYAANLE--MAT 237

Query: 241 DIISLNSIVEQWTAPYAAT----SDVHNEKLFDSLPENKRV 277
            +      VE+  A           +     F  +PE K +
Sbjct: 238 SMALPKQGVEEQAALEPVDTKDAKTIAEVAEFLKVPEKKLI 278



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 3/182 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+      +  P+ + V    RGIE+GHIF  GT+Y+  M A F   +G+   + MGSY
Sbjct: 382 ADIRFVTEGEVSPDGQGVLKFTRGIEIGHIFKLGTRYTETMGANFLDENGRSQPIIMGSY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A+ E   D  G++WP ++APF I LI +    +  +     I   L   G 
Sbjct: 442 GIGVSRLLSAIAEQQADEHGLVWPTTIAPFDIHLIPVNLKREEQKSLTASIETMLEDAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  DD  E+ G +FA +DL+G PL+V VG K V +  VE+K R TG   ++  EE+I+ 
Sbjct: 502 SVLVDDRNERPGVKFADSDLIGVPLRVTVGKKAVDE-IVELKLRKTGETIEVKKEELISS 560

Query: 438 AS 439
             
Sbjct: 561 IK 562


>gi|119194837|ref|XP_001248022.1| threonyl-tRNA synthetase, cytoplasmic [Coccidioides immitis RS]
          Length = 757

 Score =  199 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 75/472 (15%), Positives = 134/472 (28%), Gaps = 64/472 (13%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   R+      +  L      + S G    LP G K  + +  ++R E  + G 
Sbjct: 312 LKFLEEAEKRNHLKIGKEQELF--FFDEVSPGCPFLLPNGTKIFNALQKLLRTEYRKRGY 369

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG ++ Y  +M +LA    +     P +      +F    +SYR
Sbjct: 370 QEVQSPNMYDVGLWRTSGHWNHYKDDMFKLA-VEKREWALKPMNCPGHCIMFNHRERSYR 428

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP       +  R+E      G+ R R+F   D + F    + ++     +F     I+
Sbjct: 429 ELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCTEDQITQE-IEGLFDFLRAIY 487

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G     ++  + P       E    A+    +        D                
Sbjct: 488 GLFGFSF-KLKLSTRPEKYLGKLETWDFAEAQLKEALTRFKGSD---------------- 530

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT---- 301
             I E   A Y    D+    + D+L    + +   ++      F  +Y     A     
Sbjct: 531 WEIDEGDGAFYGPKIDI---TIQDALKREFQCATIQLDYQLPQNFKLEYMTNEIAKPKAP 587

Query: 302 -----------------------FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                                    G       +   +      R    +IE        
Sbjct: 588 EPKKEESGPREGGDSKAADSDDGVPGPGRARPVMIHRAIIGSFERFFGILIEHFGGKWPF 647

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                       +           D  E++   L     +V  D  G  +  +     L 
Sbjct: 648 WLSPRQILIVPVMP-------AVYDYVEELQGILRGDKLNVDIDVSGNTLQKKIRNGQLA 700

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
            +    +VG++      V I++R     +     + L E            R
Sbjct: 701 QYNFIFVVGAQEKETRTVNIRNRDDPSSQAKGSLVPLNEAREKLRALRKERR 752


>gi|328855773|gb|EGG04898.1| hypothetical protein MELLADRAFT_37217 [Melampsora larici-populina
           98AG31]
          Length = 687

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 68/445 (15%), Positives = 139/445 (31%), Gaps = 47/445 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD         L     H+ S G   WLP G +  + +   ++ E  + G  E+
Sbjct: 276 LEEAAKRDHRKIGKDQELF--FFHEMSPGSCFWLPHGTRIYNTLVEFLKSEYRKRGYDEV 333

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + ++ LW  SG +++Y + M +L    +      P +      IF S  +SYR LP
Sbjct: 334 ISPNMYNSKLWNTSGHWENYSENMFKLEIEKET-FALKPMNCPGHCLIFGSKDRSYRELP 392

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                  +  R+E      G+ R R F   DA+ F  T +        +F     ++  L
Sbjct: 393 LRMADFGVVHRNEASGALSGLTRVRRFCQDDAHHFCTTDQIDSE-VAGIFDFLKTVYGML 451

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL--N 246
           G     ++  + P                           +      ++  D  +     
Sbjct: 452 GFTY-KLKLSTRP-----------------DNYIGDLAVWNEAEKRLSSALDKFVGPGEW 493

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
            +     A Y    D+    + D+L    + +   ++    F    ++ L          
Sbjct: 494 DVDPGDGAFYGPKIDI---TISDALKRRHQCATIQLD----FQLPERFKLQYR---TDQG 543

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSH-DGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            +   V +    +G++    A++                                 +   
Sbjct: 544 ERKRPVMIHRAIMGSVERFTAILTEHFGGKWPFWLSPRQVLVIPVAAT-------HKAYA 596

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-- 423
           +++  +L   G     D     +  +    ++  +   ++VGS+ V    V ++      
Sbjct: 597 QEVAQKLWDAGLYADADMTDATLPKKIRNGEVSSYNFIIVVGSEEVESRSVNVRSADDVG 656

Query: 424 --GIREDMSLEEVINYASHRFSNNR 446
             G  + + LEE +          R
Sbjct: 657 QKGKAQALPLEETLEKFILLKDQRR 681


>gi|255947314|ref|XP_002564424.1| Pc22g03830 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591441|emb|CAP97671.1| Pc22g03830 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 741

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 76/457 (16%), Positives = 139/457 (30%), Gaps = 49/457 (10%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   R+      +  L      + S G    LP G K  + + +++R E  + G 
Sbjct: 311 LKFLEEAEKRNHLRIGKEQELF--FFDEASPGCPFLLPNGTKIFNQLQSLLRSEYRKRGY 368

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    +W  SG +  Y  +M +L D   +     P +      +F    +SYR
Sbjct: 369 QEVQTPNMYDVGVWKTSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHFILFGHRERSYR 427

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP       +  R+E      G+ R R+F   D +    + +        +F     I+
Sbjct: 428 ELPMRIADFGVLHRNEASGALSGLTRCRKFQQDDCHVVLASHQIMSE-VEGLFDFLQSIY 486

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G     ++  + P     + E    A+    +        D+ I             
Sbjct: 487 GLFGFTF-KLKLSTRPEKYMGALETWDHAEDQLKKALTKFKGDDWTIN------------ 533

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATFK 303
               E   A Y    D+    + D++    + +   ++      F           A   
Sbjct: 534 ----EGDGAFYGPKIDI---TIADAIQREFQCATIQLDYQAPINFKMEYMTKEQSQAEQP 586

Query: 304 GA---------DGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                       G+   V +    IG+  R +  +IE                    +  
Sbjct: 587 KEGETKGDELAPGRARPVVIHRAIIGSFERFLGILIEHFGGKWPFWISPRQILIVPVMPA 646

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +        D  E++   L      V  D  G  +  +     L  +    +VG+     
Sbjct: 647 VN-------DYAEELQKILQGDKLSVDIDISGNTMQKKIRTGQLAQYNFIFVVGASERET 699

Query: 414 SKVEIKHRL---TGIRE-DMSLEEVINYASHRFSNNR 446
             V +++R    T  +   + LEEV           R
Sbjct: 700 RSVNVRNRDDPATQKQGVMVPLEEVRIKLKALRKERR 736


>gi|307704119|ref|ZP_07641047.1| prolyl-tRNA synthetase [Streptococcus mitis SK597]
 gi|307622341|gb|EFO01350.1| prolyl-tRNA synthetase [Streptococcus mitis SK597]
          Length = 617

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 105/257 (40%), Positives = 148/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  +V    
Sbjct: 241 QEEIKAELLKWMVSGED 257



 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNIKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEANLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++ ++ ++        + +
Sbjct: 593 IKATGDTIEVHVDNLLETL--EILSKK 617


>gi|67538984|ref|XP_663266.1| hypothetical protein AN5662.2 [Aspergillus nidulans FGSC A4]
 gi|40743565|gb|EAA62755.1| hypothetical protein AN5662.2 [Aspergillus nidulans FGSC A4]
 gi|259484865|tpe|CBF81451.1| TPA: threonyl-tRNA synthetase, putative (AFU_orthologue;
           AFUA_4G13700) [Aspergillus nidulans FGSC A4]
          Length = 722

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 139/455 (30%), Gaps = 42/455 (9%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   R+    + +  L        S G    LP G +  + + +++R E  + G 
Sbjct: 289 LKFLEEAEKRNHLRIAKEQELF--FFDDVSPGCPFLLPNGVRIFNALQSLLRSEYRKRGY 346

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    +W  SG +  Y  +M +L D   +     P +      +F    +SYR
Sbjct: 347 QEVQTPNMYDVGIWKTSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHFVLFGHRERSYR 405

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP       +  R+E      G+ R R+F   D + F    +        +F     I+
Sbjct: 406 ELPLRIADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCTHDQIESE-IEGLFDFLQSIY 464

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G     ++  + P                  +     +  ++               
Sbjct: 465 GLFGFTF-KLKLSTRP-----------------EKYLGELETWNYAEEQLKKAMTKFKGD 506

Query: 246 NSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATF 302
           +  + E   A Y    D+    + D+L    + +   ++      F           AT 
Sbjct: 507 DWTIDEGDGAFYGPKIDI---TIADALKREFQCATIQLDYQAPLNFKLEYMTGEKTQAT- 562

Query: 303 KGADGKDHYVQMGSYGIGAMRV---VAAVIESSHDGKGIIWPDSVAPFKISLIN----IK 355
           +    K+   +      G  R      A+I S     GII       +   +      I 
Sbjct: 563 QEEAKKEADPKSNEPAPGRARPVVIHRAIIGSFERFLGIITEHFGGKWPFWISPRQVLIV 622

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D   ++   L      V  D  G  +  +     L  +   ++VG++      
Sbjct: 623 PVMPAVNDYAREVQKILQNDKLYVDVDVTGNTLQKKIRTGQLAQYNFILVVGAEEKESRS 682

Query: 416 VEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
           V I++R     +     + LEE            R
Sbjct: 683 VNIRNRDDTSSQSRGVVVPLEEARQKFRALRKERR 717


>gi|261417283|ref|YP_003250966.1| prolyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373739|gb|ACX76484.1| prolyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327884|gb|ADL27085.1| proline--tRNA ligase [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 564

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 99/227 (43%), Positives = 147/227 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SKYF   L+E P DA + SH  ++R G I   S GIYS +P+G + +  +  IIREE
Sbjct: 1   MKLSKYFYVTLRETPSDATMPSHIFLMRGGYIKPVSTGIYSMMPIGYRVIQKIVNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ G IE+ +P +Q+A+LW ESGRY + G+E+LR  DRN+  M+   THEE MTD+ R 
Sbjct: 61  MNKIGGIEVDLPVVQTAELWSESGRYQAIGEELLRFKDRNNHNMVLAMTHEEAMTDLVRY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQ + K+RDE R R G++R REFLMKDAYSF  + E     Y + + +
Sbjct: 121 VLNSYKQLPVMLYQFKTKYRDEARARGGLIRVREFLMKDAYSFHTSQEDLDRHYQEEYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           YLRI+ R+G++ + +++++G +GG ++HEF++    GE  +   K  
Sbjct: 181 YLRIYRRVGIEPVVVQSDTGIMGGKVAHEFMLDTPNGEDYLILCKKC 227



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/201 (32%), Positives = 99/201 (49%), Gaps = 1/201 (0%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +    +     A     +E              RGIE+G+IF  GTK+S  M A F 
Sbjct: 365 KHCNPKRDFPKFEVADIAEASEVCKCPCCGELLTETRGIEMGNIFKLGTKFSESMGAKFL 424

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            A+       MG YGIG  R++A+V+E+SHD  G IWP S+APF++ ++ I   +    +
Sbjct: 425 TAEKTTAPAIMGCYGIGVGRLMASVVENSHDDFGPIWPKSIAPFQVEIVPIG-KEAELME 483

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK    L   G DV  DD  E+ G +F  ADL G P+++ +G K +++ +VE K R  
Sbjct: 484 LAEKFEKELEAAGIDVLVDDRDERPGVKFKDADLWGSPVRIAIGKKGLANGEVEWKFRNE 543

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + +E+VI  A   F+ 
Sbjct: 544 KQFTMVKVEDVIAKAKEYFAE 564


>gi|145348874|ref|XP_001418868.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579098|gb|ABO97161.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 674

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 150/442 (33%), Gaps = 43/442 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  +Y   I +   RD       L       H  S G   +   G +  +N+   IRE+
Sbjct: 273 MK--EYTTRIEEAKKRDHRTIG--LNQELFFFHHLSPGSCFFQKHGARIYNNLVQFIREK 328

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P + + DLW  SG    Y + M       +      P +      +F  
Sbjct: 329 YWEYEYDEVITPNIYNFDLWKTSGHAAHYKENMFSFNVEKE-EFGLKPMNCPGHCVMFAH 387

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             ++YR LP       +  R+E      G+ R R F   DA+ F    +  +      F+
Sbjct: 388 RHRTYRELPMRVADFGVLHRNEFSGALHGLTRVRRFQQDDAHIFCREDQMEQE--LSGFL 445

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +L   + +   +  M+  + P G     E                   D    +  +  
Sbjct: 446 QFLDDVYEVFGLTYEMKLSTRPEGYLGELE-----------------VWDKAEAALKSAL 488

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D       + E   A Y    D+    +FD+L    + +   ++    F    ++     
Sbjct: 489 DRSGREWKLNEGDGAFYGPKIDI---TVFDALKRRFQCATVQLD----FQLPIRFD---- 537

Query: 300 ATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++   +      + +    +G++  + A++    +     WP  ++P ++ ++ I    
Sbjct: 538 LSYVDENNSSVRPIIIHRAILGSVERMFAILT---EHFAGKWPYWLSPKQVMIVPI---S 591

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +  RD C ++  +L K G     D    ++  +   A L  F   ++ G    ++  V +
Sbjct: 592 EASRDYCYEVKRQLRKAGHFAEVDVTDRKMQKKVREAQLDQFNYILVCGESEKANETVNV 651

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R   +   +  E  I     
Sbjct: 652 RTRDNKVHVIIRGETAITRFRK 673


>gi|255071725|ref|XP_002499537.1| predicted protein [Micromonas sp. RCC299]
 gi|226514799|gb|ACO60795.1| predicted protein [Micromonas sp. RCC299]
          Length = 722

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/422 (18%), Positives = 149/422 (35%), Gaps = 39/422 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y L I +   RD  +    L       H  S G   +LP G K  + +   IRE+  
Sbjct: 279 MAEYKLRIEEAKKRDHRLIG--LNQELFFFHTLSPGSCFFLPQGAKIYNKLMEFIREKYW 336

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + + DLW  SG    Y + M    D         P +      +F +  
Sbjct: 337 EYEYDEVITPNVYNFDLWKTSGHAAHYKENMFSF-DVEKAEFGLKPMNCPGHCVMFGNRK 395

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+E      G+ R R F   DA+ F    +  K      FV  
Sbjct: 396 RSFRELPMRLADFGVLHRNEFSGALHGLTRVRRFQQDDAHIFCRQDQMEKE--LAAFVKM 453

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L   + +   +  M+  + P G     E                   +    +     + 
Sbjct: 454 LDEIYEVFGLTYEMKLSTRPEGYLGELE-----------------TWNKAEAALEAALNG 496

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +     A Y    D+    +FD+L    + +   ++    F    +++L     
Sbjct: 497 TGKEWKLNPGDGAFYGPKIDI---TVFDALKRRFQCATVQLD----FQLPIRFNLSY--- 546

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              A+  +  + +    +G++  + A++    +     WP  ++P ++ ++ I    +  
Sbjct: 547 VSEANEPERPIIIHRAILGSVERMFAILT---EHFAGKWPFWLSPRQVMIVPI---SEQS 600

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           RD   ++ + L K G     DD   ++  +   A L  +   ++VG    ++  V I+ R
Sbjct: 601 RDYAHEVRSVLRKEGFYCEVDDSDRKMQKKVREAQLEQWNYILVVGEGEKTNRTVNIRTR 660

Query: 422 LT 423
             
Sbjct: 661 DN 662


>gi|170095495|ref|XP_001878968.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646272|gb|EDR10518.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 721

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/440 (15%), Positives = 145/440 (32%), Gaps = 44/440 (10%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD         L     +  S G   +LP G +  +++  ++R E  + G  E+  
Sbjct: 313 EAAKRDHRKIGKDQELF--FFNDLSPGSCFFLPHGTRIYNSLVELMRSEYFKRGYQEVIS 370

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + ++ LW  SG + +Y  +M  L D   +     P +      IF S  +SY+ LP  
Sbjct: 371 PNMYNSKLWETSGHWQNYKDDMF-LLDVEKEKWALKPMNCPGHCLIFDSRDRSYKELPIR 429

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             +  +  R+E      G+ R R F+  D + F + P   +   + +F     I+   G 
Sbjct: 430 MAEFGIIHRNEASGALTGLTRVRRFVQDDTHVFCM-PSQLEEEISMLFDFMQHIYGLFGF 488

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +   + P     + E    A+                                +  
Sbjct: 489 DF-RLELSTRPDNYLGTIETWDQAEAQLKLALEKHY----------------PGKWDLNP 531

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+    + D+L  + + +   ++    F    +++L         +  + 
Sbjct: 532 GDGAFYGPKIDI---TIRDALRRSFQCATIQLD----FQLPERFNLKYR---SAEEAHNR 581

Query: 311 YVQMGSYGIGAMRVVAAVIESSHD-GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
            V +    +G++    A+I                          K       +   +I 
Sbjct: 582 PVIIHRAILGSLERFIAIITEHFAGKWPFWISPRQVLVIPVAAPYK-------EYAAEIT 634

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---TGIR 426
            RL+ +G     D+    +  +    ++  +   ++VG + +    V +++R    T  +
Sbjct: 635 ERLTSLGLFADVDNGENTLPKKIRNGEIAQYNFILVVGQEELDARSVNVRNRDDVGTKAK 694

Query: 427 EDM-SLEEVINYASHRFSNN 445
            +M  L  ++        + 
Sbjct: 695 GEMVPLNLIVEKLVALKKSR 714


>gi|191638564|ref|YP_001987730.1| prolyl-tRNA synthetase [Lactobacillus casei BL23]
 gi|190712866|emb|CAQ66872.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
           [Lactobacillus casei BL23]
          Length = 579

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 111/281 (39%), Positives = 161/281 (57%), Gaps = 7/281 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E
Sbjct: 5   MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQIQAGVYAYLPLAERVLARIEAIIDDE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+
Sbjct: 65  MTKIDAVKMKMPVLLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +
Sbjct: 125 ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLDTIYRQMEHA 184

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL+   +  + G +GG  S EF  +AD GE  +  S    D+    E     
Sbjct: 185 YTNIFDRLGLRYRSIIGDGGAMGGKDSKEFSAIADIGEDTIVYSDS-SDYAANLE--MAT 241

Query: 241 DIISLNSIVEQWTAPYAAT----SDVHNEKLFDSLPENKRV 277
            +      VE+  A           +     F  +PE K +
Sbjct: 242 SMALPKQGVEEQAALEPVDTKDAKTIAEVAEFLKVPEKKLI 282



 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 3/182 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+      +  P+ + V    RGIE+GHIF  GT+Y+  M A F   +G+   + MGSY
Sbjct: 386 ADIRFVTEGEVSPDGQGVLKFTRGIEIGHIFKLGTRYTETMGANFLDENGRSQPIIMGSY 445

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A+ E   D  G++WP ++APF I LI +    +  +     I   L   G 
Sbjct: 446 GIGVSRLLSAIAEQQADEHGLVWPTTIAPFDIHLIPVNLKREEQKSLTASIETMLEVAGY 505

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  DD  E+ G +FA +DL+G PL+V VG K V +  VE+K R TG   ++  EE+I+ 
Sbjct: 506 SVLVDDRNERPGVKFADSDLIGVPLRVTVGKKAVDE-IVELKLRKTGETIEVKKEELISS 564

Query: 438 AS 439
             
Sbjct: 565 IK 566


>gi|241678425|ref|XP_002412596.1| threonyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215506398|gb|EEC15892.1| threonyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 692

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 147/443 (33%), Gaps = 49/443 (11%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   + P G    + +  +I+ E N+ G  E+ 
Sbjct: 287 EEAAKRDHRKIGREQELF--FFHELSPGSCFFQPNGAYIYNTLVDMIKAEYNKRGFQEVV 344

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + ++ LW+ SG +  Y   M    D   +     P +      +F    +S+R LP 
Sbjct: 345 TPNMYNSKLWLTSGHWQHYQDNMFSF-DVEKETFALKPMNCPGHCLMFDVRPRSWRELPL 403

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F  + + +             I+   G
Sbjct: 404 RMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCASEQIASEM-KGALEFLKHIYSIFG 462

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                ++  + P G     E    A+                        +D     ++ 
Sbjct: 463 FTF-KLKLSTRPEGFLGDIEVWNDAEK-----------------QLEQSLNDFGYPWTLN 504

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+    + D+L    + +   ++    F    ++    + ++    G+ 
Sbjct: 505 PGDGAFYGPKIDI---TIMDALRRQHQCATIQLD----FQLPIRF----NLSYISETGEK 553

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +    +G++  + A++  ++ GK   W        + +  +        D   ++
Sbjct: 554 KRPVIIHRAILGSVERMIAILTENYGGKWPFWLSPRQVTMVPVGPMYD------DYALEV 607

Query: 369 YARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVG---SKFVSDSKVEIKHRLTG 424
             +L   G     D D G  +  +   A L  +   +  G   +K      V ++ R   
Sbjct: 608 KRQLCAAGFRCDADLDPGNTMNKKIRNAQLDQYNFIL--GGLPAKT--SGTVNVRTRDNK 663

Query: 425 IREDMSLEEVINYASHRFSNNRP 447
           +  + S+ +VI   S       P
Sbjct: 664 VHGEFSVADVIERFSRLKREFVP 686


>gi|33239959|ref|NP_874901.1| prolyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|81835850|sp|Q7VD75|SYP_PROMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33237485|gb|AAP99553.1| Prolyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 603

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 104/240 (43%), Positives = 149/240 (62%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +AEI SH+L++R G I + + GIY+++PL  K +  + +I++EE
Sbjct: 1   MRVSRLMLVTLRDVPAEAEIVSHQLLIRGGFIKRVTSGIYAYMPLMWKVIKKITSIVQEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  G +E  +P L  A+LW ESGR+D Y      M  L+DR  + +  GPTHEEV+T I
Sbjct: 61  LDSKGCLETLLPQLHPAELWKESGRWDGYTAGEGIMFHLSDRQGRELGLGPTHEEVITKI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SY+ LP   YQIQ KFRDE+RPRFG+MRSREF+MKDAYSF       K +Y +M
Sbjct: 121 ANEFLQSYKQLPVNLYQIQTKFRDEIRPRFGLMRSREFIMKDAYSFHADETNLKETYLEM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y +IF R GL+++ + A+SG IGG  S EF+V A+ GE  +        +    E  
Sbjct: 181 NDAYEKIFKRCGLETVAVDADSGAIGGAESREFMVTAEAGEDLIL-LSPDKKYAANQEKA 239



 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/178 (38%), Positives = 100/178 (56%), Gaps = 1/178 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P+ K ++ RGIEVGHIF  G KYS  + A+F    G +    MG YGIG  R+  A +E 
Sbjct: 422 PKQKLIAKRGIEVGHIFQLGRKYSSCLQASFTNEMGLEEPFWMGCYGIGISRLAQASVEQ 481

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           ++D  GIIWP  +APF++ +I     D + R+  EK+Y++L   G DV  DD  E+ G +
Sbjct: 482 NYDQSGIIWPLGIAPFEVIVIVANMKDDLQRELGEKLYSQLKDEGVDVLIDDRKERAGVK 541

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           F  ADL+G P ++I G +  +   VE+  R TGI + +  EE I       SN +  +
Sbjct: 542 FKDADLIGIPWKIISG-RDSATGIVELVERSTGISKSLKAEEAIKELLEEISNYKKSI 598


>gi|313891198|ref|ZP_07824817.1| proline--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120561|gb|EFR43681.1| proline--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 617

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 101/242 (41%), Positives = 148/242 (61%), Gaps = 2/242 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S GIY++LPL  + ++ +  I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGIYAYLPLANRTIEKLKGIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG+++ +L +R     I GPTHEE  T + R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRESSDFILGPTHEETFTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHQNDEDLDITYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   +  + G +GG  S EF+ +    +         +D  IPS  +  +
Sbjct: 181 YEAIFTRSGLEFKGIIGDGGAMGGKDSQEFMAITP--DRTDLNRWLILDKSIPSLESIPE 238

Query: 241 DI 242
           D+
Sbjct: 239 DV 240



 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 18/238 (7%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             + ++   ++  D        + D    L    E+    +A   D+   K  +  P+  
Sbjct: 377 PSDIRIVADRNVQDLANAVTGANKDGYHLLGVNPERD--FHAEYVDIREVKEGEISPDGH 434

Query: 276 RVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            V    RGIE+GHIF  GT+YS  + AT    +G+   + MG YGIG  R+++AVIE   
Sbjct: 435 GVLRFARGIEIGHIFKLGTRYSNSLGATILDENGRAVPIVMGCYGIGVSRILSAVIEQHA 494

Query: 334 D-------------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                           GI +P+ +APF + LI +   DQ  +D   K+   L+  G +V 
Sbjct: 495 RLFVNKTPKGDYRFAWGINFPEELAPFDVHLITVNTKDQEAQDLTSKVEKDLTAKGYEVL 554

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            DD  E++GS+F+ +DL+G P+++ VG K  ++  VEIK + +G   ++  + +I   
Sbjct: 555 TDDRNERVGSKFSDSDLIGLPIRITVGKK-AAEGIVEIKIKASGDSIEVHADNIIETL 611


>gi|283455556|ref|YP_003360120.1| proS Prolyl-tRNA synthetase [Bifidobacterium dentium Bd1]
 gi|283102190|gb|ADB09296.1| proS Prolyl-tRNA synthetase [Bifidobacterium dentium Bd1]
          Length = 605

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 103/283 (36%), Positives = 152/283 (53%), Gaps = 2/283 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE  
Sbjct: 1   MSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLTVLNKIENIIREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
              A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +   
Sbjct: 61  SIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGAYE 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +  T   + 
Sbjct: 181 RIFDRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEALTTPEPEA 240

Query: 243 ISLNSI--VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           I        E+   P AAT D   E    + P +   + +  +
Sbjct: 241 IDCTDTPAAEKRPTPDAATIDKMVEFANANHPRSDGRAWQASD 283



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 4/189 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+        RG+E+G +F  G KYS  +       +GK   V MG
Sbjct: 414 GTVEAVEVRHGDMSPDGSGPLSFERGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMG 473

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+A + E+ HD KG+ W  +V       +     D    +A E++ A L   
Sbjct: 474 SYGIGVSRVMACIAETHHDDKGLAW-PAVIAPAQVHVVATGKDAAAFEAAEQLIAELEAK 532

Query: 376 GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD  +   G +F  A+L+G PL  + G   V++  +E++ R     E + + + 
Sbjct: 533 GIEVIFDDRKKVSPGVKFKDAELIGVPLIAVAGRDTVNNGTIEVRDRNGENAEAVPVADA 592

Query: 435 INYASHRFS 443
               + R +
Sbjct: 593 AQVIADRVA 601


>gi|225166271|ref|ZP_03727968.1| Proline--tRNA ligase [Opitutaceae bacterium TAV2]
 gi|224799484|gb|EEG18016.1| Proline--tRNA ligase [Opitutaceae bacterium TAV2]
          Length = 302

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 109/286 (38%), Positives = 168/286 (58%), Gaps = 11/286 (3%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+YF+P L+E+P DAEIASHKL++R G++ + S G+Y+++PLG +AL  ++ I REE 
Sbjct: 3   RWSQYFIPTLKESPADAEIASHKLLVRAGLVRKLSGGLYTFMPLGLRALHKISQICREEI 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-------LADRNDKAMIYGPTHEEVM 114
           +  G IE+ +P L  A+LW +  R+ +  + M R            D   + GPTHEE++
Sbjct: 63  DAGGGIELWMPHLHPAELWEQGPRWAAAREIMFRADSAGDGKRAPRDPEFVLGPTHEEII 122

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           T + +S I SYR+LP  FYQI  KFR+E+RPR+G+MR+REF+M DAYSFD+  + +  +Y
Sbjct: 123 TPLVKSEISSYRDLPKNFYQIATKFRNEIRPRYGLMRAREFVMMDAYSFDVDDDSAVKAY 182

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM----DF 230
             M  +Y + F RLG+++I + A++G +GG  SHEF+V A+ G+  V  S        + 
Sbjct: 183 FAMKTAYEKFFARLGVQAIAVEADTGVMGGSYSHEFMVPAEVGDDDVIYSDAGYAANREK 242

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +            +      A    T+  H E    S+P +K+
Sbjct: 243 ATSALVPAEFAPPPPEAPAPVEFATPGVTTIAHLEDEPYSVPGDKQ 288


>gi|167422088|ref|ZP_02313841.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|166958900|gb|EDR55921.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
          Length = 369

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/398 (16%), Positives = 126/398 (31%), Gaps = 38/398 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
              +   +R +       E+  P +    LW ++G +++Y + M       ++     P 
Sbjct: 1   FRELETFVRMKLKEYQYQEVKGPFMMDRVLWEKTGHWENYAEHMFT-TSSENREYCIKPM 59

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPE 168
           +      IF   +KSYR+LP    +     R+E      G+MR R F   DA+ F    +
Sbjct: 60  NCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHVFCTEEQ 119

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                 N        ++   G + I ++  + P     S E    A+             
Sbjct: 120 VRDE-VNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSDELWTRAED------------ 166

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                       +            A Y    +     L D L    +     ++    F
Sbjct: 167 -----DLAAALTENGIPFDYQPGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----F 214

Query: 289 YFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
               + S    A++ G +      V +    +G+M     ++   + G    W   V   
Sbjct: 215 SLPGRLS----ASYIGENNDRQVPVMIHRAILGSMERFIGILTEEYAGFFPTWLAPVQVV 270

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
            +++           D  +++  +L   G     D   E+IG +     L   P  ++ G
Sbjct: 271 VMNIT------DSQSDYVQQVTKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCG 324

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            K V   K+ ++ R       + +  V++       + 
Sbjct: 325 DKEVESGKIAVRTRRGKDLGSLDVNVVVDQLLAEIRSR 362


>gi|254365284|ref|ZP_04981329.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis str.
           Haarlem]
 gi|134150797|gb|EBA42842.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis str.
           Haarlem]
          Length = 692

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/438 (14%), Positives = 131/438 (29%), Gaps = 49/438 (11%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 262 IEEAQRRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIVRRELEDYSRRKHTEAGYQFV 320

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y   M                 +  +     P +  +   I
Sbjct: 321 NSPHITKAQLFHTSGHLDWYADGMFPPMHIDAEYNADGSLRKPGQDYYLKPMNCPMHCLI 380

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FR+  +SYR LP   ++    +R E      G+ R R   M DA+ F    +        
Sbjct: 381 FRARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIFCTRDQMRDEL-RS 439

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +    GL    +   +                    +   +++  +       
Sbjct: 440 LLRFVLDLLADYGLTDFYLELST----------------KDPEKFVGAEEVWEEATTVLA 483

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               +            A Y       + ++ D+L    ++S   ++    F F  ++  
Sbjct: 484 EVGAESGLELVPDPGGAAFYGPKI---SVQVKDALGRTWQMSTIQLD----FNFPERF-- 534

Query: 297 PMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +  ADG  H    +     G++     ++   + G    W   V    I +    
Sbjct: 535 --GLEYTAADGTRHRPVMIHRALFGSIERFFGILTEHYAGAFPAWLAPVQVVGIPVA--- 589

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     E++  +L   G     D   +++  +         P  V+ G + V+   
Sbjct: 590 ---DEHVAYLEEVATQLKSHGVRAEVDASDDRMAKKIVHHTNHKVPFMVLAGDRDVAAGA 646

Query: 416 VEIKHRLTGIREDMSLEE 433
           V  +         ++ ++
Sbjct: 647 VSFRFGDRTQINGVARDD 664


>gi|254232730|ref|ZP_04926057.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis C]
 gi|124601789|gb|EAY60799.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis C]
          Length = 692

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/438 (14%), Positives = 131/438 (29%), Gaps = 49/438 (11%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 262 IEEAQRRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIVRRELEDYSRRKHTEAGYQFV 320

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y   M                 +  +     P +  +   I
Sbjct: 321 NSPHITKAQLFHTSGHLDWYADGMFPPMHIDAECNADGSLRKPGQDYYLKPMNCPMHCLI 380

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FR+  +SYR LP   ++    +R E      G+ R R   M DA+ F    +        
Sbjct: 381 FRARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIFCTRDQMRDEL-RS 439

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +    GL    +   +                    +   +++  +       
Sbjct: 440 LLRFVLDLLADYGLTDFYLELST----------------KDPEKFVGAEEVWEEATTVLA 483

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               +            A Y       + ++ D+L    ++S   ++    F F  ++  
Sbjct: 484 EVGAESGLELVPDPGGAAFYGPKI---SVQVKDALGRTWQMSTIQLD----FNFPERF-- 534

Query: 297 PMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +  ADG  H    +     G++     ++   + G    W   V    I +    
Sbjct: 535 --GLEYTAADGTRHRPVMIHRALFGSIERFFGILTEHYAGAFPAWLAPVQVVGIPVA--- 589

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     E++  +L   G     D   +++  +         P  V+ G + V+   
Sbjct: 590 ---DEHVAYLEEVATQLKSHGVRAEVDASDDRMAKKIVHHTNHKVPFMVLAGDRDVAAGA 646

Query: 416 VEIKHRLTGIREDMSLEE 433
           V  +         ++ ++
Sbjct: 647 VSFRFGDRTQINGVARDD 664


>gi|308379255|ref|ZP_07485665.2| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu010]
 gi|308357619|gb|EFP46470.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu010]
          Length = 697

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/438 (14%), Positives = 131/438 (29%), Gaps = 49/438 (11%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 267 IEEAQRRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIVRRELEDYSRRKHTEAGYQFV 325

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y   M                 +  +     P +  +   I
Sbjct: 326 NSPHITKAQLFHTSGHLDWYADGMFPPMHIDAEYNADGSLRKPGQDYYLKPMNCPMHCLI 385

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FR+  +SYR LP   ++    +R E      G+ R R   M DA+ F    +        
Sbjct: 386 FRARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIFCTRDQMRDEL-RS 444

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +    GL    +   +                    +   +++  +       
Sbjct: 445 LLRFVLDLLADYGLTDFYLELST----------------KDPEKFVGAEEVWEEATTVLA 488

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               +            A Y       + ++ D+L    ++S   ++    F F  ++  
Sbjct: 489 EVGAESGLELVPDPGGAAFYGPKI---SVQVKDALGRTWQMSTIQLD----FNFPERF-- 539

Query: 297 PMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +  ADG  H    +     G++     ++   + G    W   V    I +    
Sbjct: 540 --GLEYTAADGTRHRPVMIHRALFGSIERFFGILTEHYAGAFPAWLAPVQVVGIPVA--- 594

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     E++  +L   G     D   +++  +         P  V+ G + V+   
Sbjct: 595 ---DEHVAYLEEVATQLKSHGVRAEVDASDDRMAKKIVHHTNHKVPFMVLAGDRDVAAGA 651

Query: 416 VEIKHRLTGIREDMSLEE 433
           V  +         ++ ++
Sbjct: 652 VSFRFGDRTQINGVARDD 669


>gi|15609751|ref|NP_217130.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis H37Rv]
 gi|15842154|ref|NP_337191.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|31793799|ref|NP_856292.1| threonyl-tRNA synthetase [Mycobacterium bovis AF2122/97]
 gi|121638501|ref|YP_978725.1| threonyl-tRNA synthetase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662454|ref|YP_001283977.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148823808|ref|YP_001288562.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis F11]
 gi|167968044|ref|ZP_02550321.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|215404564|ref|ZP_03416745.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|215412399|ref|ZP_03421153.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|215428017|ref|ZP_03425936.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T92]
 gi|215431569|ref|ZP_03429488.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|218754354|ref|ZP_03533150.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis GM 1503]
 gi|219558618|ref|ZP_03537694.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T17]
 gi|224990995|ref|YP_002645682.1| threonyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798303|ref|YP_003031304.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis KZN 1435]
 gi|254551665|ref|ZP_05142112.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260187628|ref|ZP_05765102.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A]
 gi|260201742|ref|ZP_05769233.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|260205937|ref|ZP_05773428.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis K85]
 gi|289444154|ref|ZP_06433898.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289448265|ref|ZP_06438009.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis CPHL_A]
 gi|289553596|ref|ZP_06442806.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis KZN 605]
 gi|289570786|ref|ZP_06451013.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis T17]
 gi|289575325|ref|ZP_06455552.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis K85]
 gi|289746408|ref|ZP_06505786.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis 02_1987]
 gi|289751239|ref|ZP_06510617.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis T92]
 gi|289754734|ref|ZP_06514112.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289762788|ref|ZP_06522166.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis GM 1503]
 gi|294994277|ref|ZP_06799968.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis 210]
 gi|297635225|ref|ZP_06953005.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis KZN 4207]
 gi|297732218|ref|ZP_06961336.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis KZN R506]
 gi|298526090|ref|ZP_07013499.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776889|ref|ZP_07415226.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu001]
 gi|306780653|ref|ZP_07418990.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu002]
 gi|306785417|ref|ZP_07423739.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu003]
 gi|306790017|ref|ZP_07428339.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu004]
 gi|306794098|ref|ZP_07432400.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu005]
 gi|306798512|ref|ZP_07436814.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu006]
 gi|306804375|ref|ZP_07441043.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu008]
 gi|306807585|ref|ZP_07444253.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu007]
 gi|306969787|ref|ZP_07482448.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu009]
 gi|307080714|ref|ZP_07489884.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu011]
 gi|307085303|ref|ZP_07494416.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu012]
 gi|313659553|ref|ZP_07816433.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis KZN V2475]
 gi|54039692|sp|P67583|SYT_MYCBO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|54042049|sp|P67582|SYT_MYCTU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225463|sp|A1KLW4|SYT_MYCBP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225467|sp|A5U5W5|SYT_MYCTA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783528|sp|C1AF85|SYT_MYCBT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2104299|emb|CAB08628.1| PROBABLE THREONYL-TRNA SYNTHETASE THRS (THREONINE-TRNA
           SYNTHETASE)(ThrRS) (THREONINE-TRNA LIGASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13882439|gb|AAK47005.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|31619393|emb|CAD94831.1| PROBABLE THREONYL-TRNA SYNTHETASE THRS (THREONINE-TRNA
           SYNTHETASE)(ThrRS) (THREONINE-TRNA LIGASE)
           [Mycobacterium bovis AF2122/97]
 gi|121494149|emb|CAL72627.1| Probable threonyl-tRNA synthetase thrS [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148506606|gb|ABQ74415.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148722335|gb|ABR06960.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis F11]
 gi|224774108|dbj|BAH26914.1| threonyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319806|gb|ACT24409.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis KZN 1435]
 gi|289417073|gb|EFD14313.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289421223|gb|EFD18424.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis CPHL_A]
 gi|289438228|gb|EFD20721.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis KZN 605]
 gi|289539756|gb|EFD44334.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis K85]
 gi|289544540|gb|EFD48188.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis T17]
 gi|289686936|gb|EFD54424.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis 02_1987]
 gi|289691826|gb|EFD59255.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis T92]
 gi|289695321|gb|EFD62750.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289710294|gb|EFD74310.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis GM 1503]
 gi|298495884|gb|EFI31178.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214743|gb|EFO74142.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu001]
 gi|308326483|gb|EFP15334.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu002]
 gi|308329935|gb|EFP18786.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu003]
 gi|308333550|gb|EFP22401.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu004]
 gi|308337578|gb|EFP26429.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu005]
 gi|308341244|gb|EFP30095.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu006]
 gi|308345982|gb|EFP34833.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu007]
 gi|308349051|gb|EFP37902.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu008]
 gi|308352705|gb|EFP41556.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu009]
 gi|308361561|gb|EFP50412.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu011]
 gi|308365172|gb|EFP54023.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu012]
 gi|323718811|gb|EGB27968.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis CDC1551A]
 gi|326904227|gb|EGE51160.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis W-148]
 gi|328458073|gb|AEB03496.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis KZN 4207]
          Length = 692

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/438 (14%), Positives = 131/438 (29%), Gaps = 49/438 (11%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 262 IEEAQRRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIVRRELEDYSRRKHTEAGYQFV 320

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y   M                 +  +     P +  +   I
Sbjct: 321 NSPHITKAQLFHTSGHLDWYADGMFPPMHIDAEYNADGSLRKPGQDYYLKPMNCPMHCLI 380

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FR+  +SYR LP   ++    +R E      G+ R R   M DA+ F    +        
Sbjct: 381 FRARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIFCTRDQMRDEL-RS 439

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +    GL    +   +                    +   +++  +       
Sbjct: 440 LLRFVLDLLADYGLTDFYLELST----------------KDPEKFVGAEEVWEEATTVLA 483

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               +            A Y       + ++ D+L    ++S   ++    F F  ++  
Sbjct: 484 EVGAESGLELVPDPGGAAFYGPKI---SVQVKDALGRTWQMSTIQLD----FNFPERF-- 534

Query: 297 PMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +  ADG  H    +     G++     ++   + G    W   V    I +    
Sbjct: 535 --GLEYTAADGTRHRPVMIHRALFGSIERFFGILTEHYAGAFPAWLAPVQVVGIPVA--- 589

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     E++  +L   G     D   +++  +         P  V+ G + V+   
Sbjct: 590 ---DEHVAYLEEVATQLKSHGVRAEVDASDDRMAKKIVHHTNHKVPFMVLAGDRDVAAGA 646

Query: 416 VEIKHRLTGIREDMSLEE 433
           V  +         ++ ++
Sbjct: 647 VSFRFGDRTQINGVARDD 664


>gi|257456072|ref|ZP_05621275.1| prolyl-tRNA synthetase [Treponema vincentii ATCC 35580]
 gi|257446530|gb|EEV21570.1| prolyl-tRNA synthetase [Treponema vincentii ATCC 35580]
          Length = 578

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 89/241 (36%), Positives = 139/241 (57%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+RS+ F+P L+E P +A + SH+L+LR GMI +   G++++LPLG +    V  I+REE
Sbjct: 1   MKRSQTFIPTLRETPAEAVVVSHQLLLRAGMIRRLGNGLFNYLPLGLRVFRKVENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G +E     +   ++W ES R+ + G  +LR+ +R  + ++  PT+EE  T + R 
Sbjct: 61  IDAIGCLECKASVVAPGEIWQESKRWYTMGDGLLRMKNRLGQDLVVSPTNEESFTALMRY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++ P + Y I  K+RDE+RPR+G+MR+REF MKDAYSF    E    +Y     +
Sbjct: 121 ELGSYKDYPLSVYHINTKYRDEIRPRYGLMRAREFTMKDAYSFHTNAECLDKTYRAFGEA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R GL  I +RA+SG +GG  S EF+V +  G+  +             +     
Sbjct: 181 YEKIFRRFGLSIIRVRADSGSMGGSGSEEFMVESAIGDDTLILCPQCRYSANEEKAACAP 240

Query: 241 D 241
           D
Sbjct: 241 D 241



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/189 (35%), Positives = 102/189 (53%), Gaps = 5/189 (2%)

Query: 257 AATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A   DV   K  DS P       S +G E+GHIF  GTKY+  M+ T+    G+  Y  M
Sbjct: 385 AMVYDVRVVKAGDSCPLCGTPFYSKKGNELGHIFKLGTKYTKSMNMTYLDESGQQQYPLM 444

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R +A++IE  HD  GIIWP SVAP+ + ++ I  ++   + A ++++  L+ 
Sbjct: 445 GCYGIGIDRALASIIEEHHDSNGIIWPMSVAPYHVGIVPI-QYEGTMKAAADRLHDELTM 503

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G +F   DL+G P+++++  K + +  VE K R      +M L+ V
Sbjct: 504 RGIEVLLDDRVERPGVKFKDMDLIGLPIRIVISDKKLPN--VEFKFRSDTDPVNMPLDGV 561

Query: 435 INYASHRFS 443
            +Y   R  
Sbjct: 562 ADYVVQRVQ 570


>gi|306823404|ref|ZP_07456779.1| proline--tRNA ligase [Bifidobacterium dentium ATCC 27679]
 gi|309802595|ref|ZP_07696699.1| proline--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
 gi|304553111|gb|EFM41023.1| proline--tRNA ligase [Bifidobacterium dentium ATCC 27679]
 gi|308220659|gb|EFO76967.1| proline--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
          Length = 611

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 103/284 (36%), Positives = 152/284 (53%), Gaps = 2/284 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE 
Sbjct: 6   RMSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLTVLNKIENIIREEM 65

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
               A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +  
Sbjct: 66  ASIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDL 125

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +Y
Sbjct: 126 YSSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGAY 185

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +  T   +
Sbjct: 186 ERIFDRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEALTTPEPE 245

Query: 242 IISLNSI--VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
            I        E+   P AAT D   E    +   +   + +  +
Sbjct: 246 AIDCTDTPAAEKRPTPDAATIDKMVEFANANHSRSDGRAWQASD 289



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 4/189 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+        RG+E+G +F  G KYS  +       +GK   V MG
Sbjct: 420 GTVEAVEVRHGDMSPDGSGPLSFERGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMG 479

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+A + E+ HD KG+ W  +V       +     D    +A E++ A L   
Sbjct: 480 SYGIGVSRVMACIAETHHDDKGLAW-PAVIAPAQVHVVATGKDAAAFEAAEQLIAELEAK 538

Query: 376 GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD  +   G +F  A+L+G PL  + G   V++  +E++ R     E + + + 
Sbjct: 539 GIEVIFDDRKKVSPGVKFKDAELIGVPLIAVAGRDTVNNGTIEVRDRNGENAEAVPVADA 598

Query: 435 INYASHRFS 443
               + R +
Sbjct: 599 AQVIADRVA 607


>gi|68070445|ref|XP_677134.1| threonine--tRNA ligase [Plasmodium berghei strain ANKA]
 gi|56497130|emb|CAH95381.1| threonine--tRNA ligase, putative [Plasmodium berghei]
          Length = 780

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/483 (16%), Positives = 144/483 (29%), Gaps = 72/483 (14%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   I +   RD       L L      + S G   W   G K  + +   +R+E  
Sbjct: 313 LTDYIKFIEEAKKRDHRNVGKNLNLF-FFEKETSPGSGFWFAHGAKIYNKLIEFMRKEYR 371

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + S DLW  SG Y +Y   M    +  +K     P +      IF+   
Sbjct: 372 IRKYEEVITPNIFSCDLWKTSGHYQNYKNCMFIF-NIENKEWGMKPMNCPGHCLIFKQLN 430

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY++LP       +  R+E+     G+ R R F   DA+ F             +    
Sbjct: 431 ASYKSLPIRLADFGVLHRNEITGSLSGLTRVRRFQQDDAHIFCSLDHIKTE-VVNVLQFI 489

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +++  G K   +   + P                  +     D  +F   S     + 
Sbjct: 490 FFVYNLFGFKYD-LYLSTRP-----------------PKYIGDIDTWNFAEKSLKEALEL 531

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMS 299
                 + E   A Y    D+    L DSL  + +     ++      F    K      
Sbjct: 532 ANVEWKLNEGDGAFYGPKIDI---VLKDSLNRSHQCGTVQLDFQLPIRFNLQYKNKEYGV 588

Query: 300 ATFKG--------------------------------------ADGKDHYVQMGSYGIGA 321
                                                        G D  + +    +G+
Sbjct: 589 GQETDSNLVNDSNIDPIEKKEDSTLENIDNNEDAINSQSTAILKKGFDRPIIIHRAILGS 648

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +    A++     GK   W        + +           +  + I+  L+    DV  
Sbjct: 649 VERFVAILVEHTSGKFPFWLSPRQAIVLPI------SDKFNEYAKYIHNVLTNNLFDVDV 702

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMSLEEVINYASH 440
           D     +  +   A L  +   ++VG K +S + V ++ R     ++  +++E++N    
Sbjct: 703 DISVNTLNKKIREAQLKQYNFILVVGEKEISTNTVTVRDRDNPNDQKVYTIQELVNTFKK 762

Query: 441 RFS 443
              
Sbjct: 763 MLD 765


>gi|221231165|ref|YP_002510317.1| prolyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|225853864|ref|YP_002735376.1| prolyl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|254782918|sp|B8ZKT3|SYP_STRPJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782920|sp|C1CC55|SYP_STRZJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|220673625|emb|CAR68112.1| prolyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|225723520|gb|ACO19373.1| prolyl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|332076711|gb|EGI87173.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA17545]
          Length = 617

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 107/257 (41%), Positives = 148/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  PTL SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPTLLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITSARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  IV    
Sbjct: 241 QEEIKAELLKWIVSGED 257



 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + V+        + +
Sbjct: 593 IKATGDTIEVHADNVLETL--EILSKK 617


>gi|148994606|ref|ZP_01823748.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|168489739|ref|ZP_02713938.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|147927136|gb|EDK78174.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|183571778|gb|EDT92306.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|332075929|gb|EGI86396.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA17570]
          Length = 617

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITSARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  IV    
Sbjct: 241 QEEIKAELLKWIVSGED 257



 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + V+        + +
Sbjct: 593 IKATGDTIEVHADNVLETL--EILSKK 617


>gi|215446866|ref|ZP_03433618.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T85]
 gi|289758745|ref|ZP_06518123.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T85]
 gi|289714309|gb|EFD78321.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T85]
          Length = 692

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/438 (14%), Positives = 132/438 (30%), Gaps = 49/438 (11%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 262 IEEAQRRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIVRRELEDYSRRKHTEAGYQFV 320

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDI 117
           + P +  A L+  SG  D Y   M                 +  +     P +  +   I
Sbjct: 321 NSPHITKAQLFHTSGHLDWYADGMFPPMHIDAEYNADGSLRKPGQDYYLKPMNCPMHCLI 380

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           FR+  +SYR LP   ++    +R E      G+ R R   M DA+ F    + S      
Sbjct: 381 FRARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIFCTRDQMSDEL-RS 439

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +    L +    GL    +   +                    +   +++  +       
Sbjct: 440 LLRFVLDLLADYGLTDFYLELST----------------KDPEKFVGAEEVWEEATTVLA 483

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
               +            A Y       + ++ D+L    ++S   ++    F F  ++  
Sbjct: 484 EVGAESGLELVPDPGGAAFYGPKI---SVQVKDALGRTWQMSTIQLD----FNFPERF-- 534

Query: 297 PMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                +  ADG  H    +     G++     ++   + G    W   V    I +    
Sbjct: 535 --GLEYTAADGTRHRPVMIHRALFGSIERFFGILTEHYAGAFPAWLAPVQVVGIPVA--- 589

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     E++  +L   G     D   +++  +         P  V+ G + V+   
Sbjct: 590 ---DEHVAYLEEVATQLKSHGVRAEVDASDDRMAKKIVHHTNHKVPFMVLAGDRDVAAGA 646

Query: 416 VEIKHRLTGIREDMSLEE 433
           V  +         ++ ++
Sbjct: 647 VSFRFGDRTQINGVARDD 664


>gi|193216931|ref|YP_002000173.1| threonyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
 gi|193002254|gb|ACF07469.1| threonyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
          Length = 579

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/441 (12%), Positives = 138/441 (31%), Gaps = 31/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +++E   RD       L +         +G   WL  G K  + +   + +   + G
Sbjct: 169 YLALVEERKERDHRKIGKDLNIFAV-SQLSGQGFPIWLEDGMKIHNAIRDYVLKLDRKFG 227

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P      L+  SG +D Y ++M      +++ ++  P        ++    +SY
Sbjct: 228 FKEVLTPHFGEKKLYEISGHWDHYQEDMFTPIKMDNETLVARPMTCPHHIVLYNMTRRSY 287

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R+LP  + +    +R E       +     +        +  +  K  +  ++    +  
Sbjct: 288 RDLPIRYSEQSRLYRYEKSGALSGLERVRSMDLTEGHVFVRKDQIKAEFKHLYNMIQKAL 347

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               ++   +                        + F      +           ++   
Sbjct: 348 SDFDIQVDHVSLSLRDPNNS-------------VKFFNDDKMWNQAEADLKEVLKELKIE 394

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                   A Y    D   + +   L +   +S   ++    F    ++ +         
Sbjct: 395 YKEFIGEAAFYGPKIDFQVKTV---LNKIITMSTLQLD----FLLPARFEMKY---VDDK 444

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           +     V +    IG      A++     G    W        + ++          D C
Sbjct: 445 EEFQTPVLIHRGLIGTYERFIAILLEQTKGVLPYWLSPRQVTILPIV------DEVNDYC 498

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +K+Y     +G +   D   E+I  +   A LL     +++G   ++++ + ++   +  
Sbjct: 499 QKLYEEFIDLGINANVDLRSERINKKIREAQLLKTKFIIVIGKNEIANNTLAVRAYGSEE 558

Query: 426 REDMSLEEVINYASHRFSNNR 446
            +  + EE +    +  +N +
Sbjct: 559 TKTYTKEEFLTMLENLKNNLK 579


>gi|223984654|ref|ZP_03634777.1| hypothetical protein HOLDEFILI_02073 [Holdemania filiformis DSM
           12042]
 gi|223963395|gb|EEF67784.1| hypothetical protein HOLDEFILI_02073 [Holdemania filiformis DSM
           12042]
          Length = 566

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 99/244 (40%), Positives = 145/244 (59%), Gaps = 1/244 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F   L+EN +D +  S  L++R GMI + S G+Y +LPLG K L  +  I+REE
Sbjct: 1   MRLSQSFFTTLRENVKDEDSVSGNLLVRAGMIKKSSAGVYMYLPLGYKVLKKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ G+ E+ +P L   +++V SGR D++G  M  L DR +K+ + GPTHEE+       
Sbjct: 61  MDQAGSQELLMPALIPEEVYVASGRRDNFGSSMFSLKDRFNKSYVLGPTHEELFAVAAGM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+++PF  YQ Q K+RDE RPR+G++R REF+MKDAYSFD    G   +Y KMF +
Sbjct: 121 KIRSYKDMPFNLYQFQTKYRDEARPRYGLIRVREFIMKDAYSFDKDEAGMDVAYQKMFDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y R F R+ +    +RA++G +GG LS EF  + + GE  +        F    E     
Sbjct: 181 YKRAFDRMHMDYKIVRADTGVMGGLLSEEFQAVTEIGEDVLVLCDQCS-FASNLEVAPCK 239

Query: 241 DIIS 244
           D  +
Sbjct: 240 DEGA 243



 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 69/208 (33%), Positives = 105/208 (50%), Gaps = 3/208 (1%)

Query: 237 TDFDDIISLNSIV--EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           T  +        V  E + A Y A      E     +   K V  +GIE+G+ F  GTKY
Sbjct: 356 TGANKTGYHYIHVNQEDFKADYTADVRQIMEGDTCPICGGKIVFKKGIEIGNTFKLGTKY 415

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           +  M   +   + K + V MGSYGIG  R +AA+ E   D  G+ WP ++AP+ ++++ I
Sbjct: 416 AQAMDLEYLDQENKLNPVWMGSYGIGIGRCMAALAEQHSDEHGLCWPINIAPYPVAIVVI 475

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              D+    A E++YA+L   G DV  DD  E+ G +F   DL+G P+++ VG K + D 
Sbjct: 476 AKKDEQQMAAAEQLYAQLQAAGVDVMLDDRDERPGVKFKDMDLIGTPIRLTVGKK-IGDG 534

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            VE+K R     ED+S++ V+       
Sbjct: 535 LVEMKLRKAEKAEDISIDNVVAKVLELI 562


>gi|194397930|ref|YP_002036964.1| prolyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|307126481|ref|YP_003878512.1| prolyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
 gi|226701343|sp|B5E6T8|SYP_STRP4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194357597|gb|ACF56045.1| prolyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|306483543|gb|ADM90412.1| prolyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
          Length = 617

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITSARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  IV    
Sbjct: 241 QEEIKAELLKWIVSGED 257



 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             +   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTSEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + V+        + +
Sbjct: 593 IKATGDTIEVHADNVLETL--EILSKK 617


>gi|149011134|ref|ZP_01832439.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|147764770|gb|EDK71700.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
          Length = 617

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITSARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  IV    
Sbjct: 241 QEEIKAELLKWIVSGED 257



 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-ATDGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + V+        + +
Sbjct: 593 IKATGDTIEVHADNVLETL--EILSKK 617


>gi|148988004|ref|ZP_01819467.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|148996688|ref|ZP_01824406.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|149001621|ref|ZP_01826594.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|168484646|ref|ZP_02709598.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|168493960|ref|ZP_02718103.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|168576309|ref|ZP_02722192.1| prolyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|169833273|ref|YP_001693792.1| prolyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|225860301|ref|YP_002741810.1| prolyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649666|ref|ZP_04523918.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974]
 gi|237821366|ref|ZP_04597211.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229643|ref|ZP_06963324.1| prolyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298256044|ref|ZP_06979630.1| prolyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502082|ref|YP_003724022.1| proline--tRNA ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|307066942|ref|YP_003875908.1| prolyl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|226701344|sp|B1I8Z1|SYP_STRPI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|254782922|sp|C1CPD8|SYP_STRZT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|147757263|gb|EDK64302.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|147760079|gb|EDK67068.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147926468|gb|EDK77541.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|168995775|gb|ACA36387.1| prolyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|172042164|gb|EDT50210.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|183576158|gb|EDT96686.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|183577873|gb|EDT98401.1| prolyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|225727194|gb|ACO23045.1| prolyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237677|gb|ADI68808.1| proline--tRNA ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|301801205|emb|CBW33879.1| prolyl-tRNA synthetase [Streptococcus pneumoniae INV200]
 gi|306408479|gb|ADM83906.1| Prolyl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|327390681|gb|EGE89021.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA04375]
 gi|332077566|gb|EGI88027.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA41301]
 gi|332202178|gb|EGJ16247.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA41317]
 gi|332203430|gb|EGJ17497.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA47368]
 gi|332204272|gb|EGJ18337.1| prolyl-tRNA synthetase [Streptococcus pneumoniae GA47901]
          Length = 617

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITSARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  IV    
Sbjct: 241 QEEIKAELLKWIVSGED 257



 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + V+        + +
Sbjct: 593 IKATGDTIEVHADNVLETL--EILSKK 617


>gi|149179156|ref|ZP_01857725.1| prolyl-tRNA synthetase [Planctomyces maris DSM 8797]
 gi|148842016|gb|EDL56410.1| prolyl-tRNA synthetase [Planctomyces maris DSM 8797]
          Length = 584

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 110/240 (45%), Positives = 149/240 (62%), Gaps = 4/240 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S   +P ++E P DAEI SH+LMLR G+I Q   G Y++LPLG KA+     I+REE
Sbjct: 1   MRWSNTLIPTIKEVPADAEIPSHQLMLRAGLIRQLMAGAYTYLPLGWKAIQKAAQIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK---AMIYGPTHEEVMTDI 117
            +  GA E+ +P LQ   L+  + R +++G  +++           M  GPTHEEV+TD+
Sbjct: 61  MDAAGAAELHMPALQPIGLFERTQRKEAFGSVLIQFNVPRGNRQIPMALGPTHEEVVTDL 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               I SY+ LP T YQIQ KFR+E RPRFGV+R+ EFLMKDAYSF  + +     Y++M
Sbjct: 121 ISHCISSYKQLPLTVYQIQTKFRNEERPRFGVLRTSEFLMKDAYSFSSSVKQLDEIYDRM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           + +Y RIF R GLK +P+ AESGPIGGD SHEF++ AD GE  +   +    +    E  
Sbjct: 181 YRAYCRIFARCGLKYLPVEAESGPIGGDASHEFMIPADNGEDSIVYCE-ASGYAANMERA 239



 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 98/190 (51%), Gaps = 2/190 (1%)

Query: 259 TSDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T D+ N +  D  P+         GIEVGH+F  GTKY+  + A F     K H + MG 
Sbjct: 384 TFDLRNAEAGDPCPKSGEPLTIVHGIEVGHVFKLGTKYTEALDANFLDEKEKRHPIIMGC 443

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+VA + E+ HD  G+IWP S+AP+++ +I +   D       E+ Y  L   G
Sbjct: 444 YGIGVNRIVAGLAETRHDENGLIWPLSIAPYEVLVIPLNVKDDEVMQTAERYYNELKAAG 503

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV +DD   + G +F  ADL+G P +V++G K +   ++E K R     E ++L+  I 
Sbjct: 504 VDVLFDDRNARPGVKFKDADLIGIPYRVVIGGKGLQKGEIETKWRTAENAEMIALDAGIR 563

Query: 437 YASHRFSNNR 446
                  + +
Sbjct: 564 PVLEALESRK 573


>gi|115359784|ref|YP_776922.1| tRNA synthetase, class II (G, H, P and S) [Burkholderia ambifaria
           AMMD]
 gi|115285072|gb|ABI90588.1| tRNA synthetase, class II (G, H, P and S) [Burkholderia ambifaria
           AMMD]
          Length = 402

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 80/426 (18%), Positives = 140/426 (32%), Gaps = 41/426 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  +  +KL L        S G   W P G      V   IR    +    E+  P + S
Sbjct: 5   DHRVLGNKLDLF--HQQDESPGAIFWHPRGMVLYRVVEEYIRVRMRQAAFAEVRTPQIVS 62

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            DLW +SG ++ +G+ M  L + ++      P        IF+   +SYR+LP  + +  
Sbjct: 63  RDLWEQSGHWEKFGRNMFSL-ESDNNPYCLKPMSCPCHVQIFKKGSRSYRDLPIRYSEFG 121

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R E      G+MR+R F   DA+   +  +       +  V    I+   G     +
Sbjct: 122 AVHRAEPSGALHGLMRARAFTQDDAHVLCMPDQVEIE-VARFCVLLKTIYADFGFGEFDV 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              + P            ++            +DF I +                   A 
Sbjct: 181 ALSTRPAVRAGDDAVWDRSEAM-LASAARAAGLDFAIQA----------------GEGAF 223

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQM 314
           Y    + H   LFD      +     ++       G        A +   DG     V +
Sbjct: 224 YGPKLEFH---LFDRQGRKWQCGTIQLDFVLPERLG--------AAYVAEDGAKATPVML 272

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               +G++     ++   ++G    W          + NI   D   R   +        
Sbjct: 273 HHAVLGSLERFIGILLEHYEGWLPTWLAPDQIV---VANIGKDD---RAFADNTAFAFED 326

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +GC V  D   E++  +   A  L  P+  I G K     +V ++ R  G +  +++ + 
Sbjct: 327 IGCRVLRDFRAERLPRKIFDARELAAPIVAIAGRKEALAGEVSLRLRD-GEQHVLTINDA 385

Query: 435 INYASH 440
           + Y   
Sbjct: 386 LAYLKQ 391


>gi|322388633|ref|ZP_08062233.1| proline--tRNA ligase [Streptococcus infantis ATCC 700779]
 gi|321140553|gb|EFX36058.1| proline--tRNA ligase [Streptococcus infantis ATCC 700779]
          Length = 617

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 104/257 (40%), Positives = 146/257 (56%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKMGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP + 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSVASFDEIPVDV 240

Query: 237 TDFDDIISLNSIVEQWT 253
                   L  +V    
Sbjct: 241 QKEIKAELLKWMVSGED 257



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 ASLALTDRIEEALVNKGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + ++         N+
Sbjct: 593 IKATGDTIEVHADSLLETL--EILTNK 617


>gi|331082613|ref|ZP_08331736.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400232|gb|EGG79874.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 658

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/449 (14%), Positives = 147/449 (32%), Gaps = 38/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE-EQ 61
            ++Y   + +   RD      ++ L T  +    +G+   +P G   L  +   I + E 
Sbjct: 226 LNEYLEQLEEAKKRDHNKLGREMGLFTT-VDVIGQGLPLLMPKGVIMLKELQRWIEDLED 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFR 119
           N  G +    P +   DL+  SG +D Y + M      +++ +     P        +++
Sbjct: 285 NEWGYVRTKTPLMAKNDLYKISGHWDHYKEGMFVLGDEEKDKEVFALRPMTCPFQYYVYK 344

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           ++  SYR LP  + +    FR+E      G+ R R+F + + +      +  +  +    
Sbjct: 345 ANQHSYRELPIRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLIVRPDQMVEE-FKGCL 403

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NT 237
                    LG+                    +   D    + +  +  +          
Sbjct: 404 ALAKHCLETLGVAEDVTY-------------HLSKWDPENKEKYIGEPEVWEETEGHIRN 450

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              ++           A Y    D++ + ++    +   +     +      F       
Sbjct: 451 ILTELGVPFVEDVGEAAFYGPKVDINAKNVY---GKEDTMITIQWDALLAEQFD------ 501

Query: 298 MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +   +G      +     +G      A +    +    ++P  + P ++ ++ I  
Sbjct: 502 --MYYIDENGDKKRPYIIHRTSMGCYERTLAWLI---EKYAGLFPTWLCPEQVRVLPI-- 554

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   D   ++  +L   G     D+  E+IG +   A L   P  ++VG+K   D  V
Sbjct: 555 -SEKYGDYANEVQKQLKANGIRSSVDNRSEKIGYKIREARLEKVPYMLVVGAKEEEDKVV 613

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G     +L E I+         
Sbjct: 614 SVRSRYLGDEGQKTLSEFIDAICKEIRTK 642


>gi|149006018|ref|ZP_01829747.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|147762374|gb|EDK69335.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
          Length = 617

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITSARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  IV    
Sbjct: 241 QEEIKAELLKWIVSGED 257



 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + V+        + +
Sbjct: 593 IKATGDTIEVHADNVLETL--EILSKK 617


>gi|168492219|ref|ZP_02716362.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|183573637|gb|EDT94165.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
          Length = 617

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITSARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  IV    
Sbjct: 241 QEEIKAELLKWIVSGED 257



 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + V+        + +
Sbjct: 593 IKATGDTIEVHADNVLETL--EILSKK 617


>gi|15900198|ref|NP_344802.1| prolyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|81855097|sp|Q97SR1|SYP_STRPN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|14971734|gb|AAK74442.1| prolyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
          Length = 617

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITSARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  IV    
Sbjct: 241 QEEIKAELLKWIVSGED 257



 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + V+        + +
Sbjct: 593 IKATGDTIEVHADNVLETL--EILSKK 617


>gi|303255041|ref|ZP_07341117.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|302597871|gb|EFL64941.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS455]
          Length = 617

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITSARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  IV    
Sbjct: 241 QEEIKAELLKWIVSGED 257



 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +AP  + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPLDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + V+        + +
Sbjct: 593 IKATGDTIEVHADNVLETL--EILSKK 617


>gi|327330301|gb|EGE72050.1| threonine--tRNA ligase [Propionibacterium acnes HL097PA1]
          Length = 689

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/448 (14%), Positives = 129/448 (28%), Gaps = 45/448 (10%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   ++E  R D      +L L +    +   G+  + P G      +   +       G
Sbjct: 250 YQQRIKEAERRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGAMLRHLIEEHVIARHMEAG 308

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R  +       +  +
Sbjct: 309 FYFVHTPEITKGGLFHTSGHLPYYAGTMFPPMLVDEERDEEGNVIRAGQEYYLKAMNCPM 368

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +    
Sbjct: 369 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTYCTREQAPGE 428

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    +L I    GL    +   +         +FI   +                 
Sbjct: 429 -IKKQIEFFLSILADFGLNDFYLELSTRESNSAKEEKFIGSDED-----------WQVAT 476

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            + +                 A Y       + ++ D++    ++S    +         
Sbjct: 477 DTLDQVCRSTGLQLVPDPGGAAFYGPKV---SVQVRDAIGRTWQMSTIQYDFNQP----- 528

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG       + S  +G++     V+   +     +W           
Sbjct: 529 ---ERFDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAAAFPVW------LSPVQ 579

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +   D   +    L   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 580 VRLVPVAEAFNDYVTEFAEVLGSRGIRVETDLSSDRFGKKIRNASKEKVPFILIAGGEDA 639

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
               V  + R       + L+E +   +
Sbjct: 640 EAGAVSFRLRDGSQVNGVVLDEAVRIIA 667


>gi|148983669|ref|ZP_01816988.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|147923816|gb|EDK74928.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301799407|emb|CBW31944.1| prolyl-tRNA synthetase [Streptococcus pneumoniae OXC141]
          Length = 617

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITSARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  IV    
Sbjct: 241 QEEIKAELLKWIVSGED 257



 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + V+        + +
Sbjct: 593 IKATGDTIEVHADNVLETL--EILSKK 617


>gi|225858114|ref|YP_002739624.1| prolyl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|254782917|sp|C1CB39|SYP_STRP7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225721841|gb|ACO17695.1| prolyl-tRNA synthetase [Streptococcus pneumoniae 70585]
          Length = 617

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITSARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  IV    
Sbjct: 241 QEEIKAELLKWIVSGED 257



 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + V+        + +
Sbjct: 593 IKATGDTIEVHADNVLETL--EILSKK 617


>gi|301793532|emb|CBW35907.1| prolyl-tRNA synthetase [Streptococcus pneumoniae INV104]
          Length = 617

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITSARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  IV    
Sbjct: 241 QEEIKAELLKWIVSGED 257



 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALIEKLEASLMGDGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + V+        + +
Sbjct: 593 IKATGDTIEVHADNVLETL--EILSKK 617


>gi|229552422|ref|ZP_04441147.1| proline--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|258539792|ref|YP_003174291.1| prolyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
 gi|229314159|gb|EEN80132.1| proline--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|257151468|emb|CAR90440.1| Prolyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
          Length = 576

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 107/279 (38%), Positives = 157/279 (56%), Gaps = 3/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E
Sbjct: 1   MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQVQAGVYAYLPLAERVLSRIEAIIDDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+
Sbjct: 61  MTKIDAVKMKMPALLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +
Sbjct: 121 ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLNTIYRQMEHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL+   +  + G +GG  S EF  +A  GE  +  S    D+    E     
Sbjct: 181 YTNIFDRLGLRYRTIIGDGGAMGGKDSKEFSAIASIGEDTIVYSDS-SDYAANLEMATSM 239

Query: 241 DIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPENKRV 277
            +       +    P        +        +PE K +
Sbjct: 240 ALPKQGVEAQAELTPVDTKDAKTIAEVAALLKIPEQKLI 278



 Score =  156 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 70/182 (38%), Positives = 101/182 (55%), Gaps = 3/182 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  +  P+ + V    RGIE+GHIF  GT+YS  M A F   +G+   + MGSY
Sbjct: 382 ADIRFVKEGEVSPDGQGVLKFTRGIEIGHIFKLGTRYSETMGADFLDENGRSQPIIMGSY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A+ E   D  G+IWP ++APF I LI +    +  +     I   L   G 
Sbjct: 442 GIGVSRLLSAIAEQQADDHGLIWPTTIAPFDIHLIPVNLKREEQKTLTAAIGTMLEDAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  DD  E+ G +FA +DL+G PL+V VG K V +  VE+K R TG   ++  EE+I+ 
Sbjct: 502 SVLVDDRNERPGVKFADSDLIGIPLRVTVGKKAVDE-IVELKLRKTGETIEVKKEELISS 560

Query: 438 AS 439
             
Sbjct: 561 IK 562


>gi|260589197|ref|ZP_05855110.1| threonine--tRNA ligase [Blautia hansenii DSM 20583]
 gi|260540278|gb|EEX20847.1| threonine--tRNA ligase [Blautia hansenii DSM 20583]
          Length = 658

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/449 (14%), Positives = 148/449 (32%), Gaps = 38/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE-EQ 61
            ++Y   + +   RD      ++ L T  +    +G+   +P G   L  +   I + E 
Sbjct: 226 LNEYLEQLEEAKKRDHNKLGREMGLFTT-VDVIGQGLPLLMPKGVIMLKELQRWIEDLED 284

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFR 119
           N  G +    P +   DL+  SG +D Y + M      +++ +     P        +++
Sbjct: 285 NEWGYVRTKTPLMAKNDLYKISGHWDHYKEGMFVLGDEEKDKEVFALRPMTCPFQYYVYK 344

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           ++  SYR LP  + +    FR+E      G+ R R+F + + +      +  +  +    
Sbjct: 345 ANQHSYRELPIRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLIVRPDQMVEE-FKGCL 403

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NT 237
                    LG++                   +   D    + +  +  +          
Sbjct: 404 ALAKHCLETLGVEEDVTY-------------HLSKWDPENKEKYIGEPEVWEETEGHIRN 450

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              ++           A Y    D++ + ++    +   +     +      F       
Sbjct: 451 ILTELGVPFVEDVGEAAFYGPKVDINAKNVY---GKEDTMITIQWDALLAEQFD------ 501

Query: 298 MSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +   +G      +     +G      A +    +    ++P  + P ++ ++ I  
Sbjct: 502 --MYYIDENGDKKRPYIIHRTSMGCYERTLAWLI---EKYAGLFPTWLCPEQVRVLPI-- 554

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   D   ++  +L   G     D+  E+IG +   A L   P  ++VG+K   D  V
Sbjct: 555 -SEKYGDYANEVQKQLKANGIRSSVDNRSEKIGYKIREARLEKVPYMLVVGAKEEEDKVV 613

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G     +L E I+         
Sbjct: 614 SVRSRYLGDEGQKTLSEFIDAICKEIRTK 642


>gi|258568114|ref|XP_002584801.1| threonyl-tRNA synthetase [Uncinocarpus reesii 1704]
 gi|237906247|gb|EEP80648.1| threonyl-tRNA synthetase [Uncinocarpus reesii 1704]
          Length = 756

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 139/472 (29%), Gaps = 64/472 (13%)

Query: 8   LPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L  L+E   R+      +  L      + S G    LP G K  +++  ++R E  + G 
Sbjct: 311 LKFLEEAEKRNHLKIGKEQELF--FFDEVSPGCPFLLPNGTKIFNSLQKLLRTEYRKRGY 368

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG ++ Y  +M +LA    +     P +      +F    +SYR
Sbjct: 369 QEVQSPNMYDVGLWRTSGHWNHYKDDMFKLA-VEKREWALKPMNCPGHCIMFNHRERSYR 427

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP       +  R+E      G+ R R+F   D + F    + ++     +F     I+
Sbjct: 428 ELPLRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCTEDQITQE-IEGLFDFLRAIY 486

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              G     ++  + P       E    A+    +        D                
Sbjct: 487 GLFGFSF-KLKLSTRPEKYLGKLETWNFAEAQLKEALTRFKGSD---------------- 529

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATFK 303
             I E   A Y    D+    + D+L    + +   ++      F      +        
Sbjct: 530 WEIDEGDGAFYGPKIDI---TIQDALKREFQCATIQLDYQLPQNFKLEYMTNETGRPKAT 586

Query: 304 GA------------------------DGKDHYVQMGSYGIGAM-RVVAAVIESSHDGKGI 338
            A                         G+   V +    IG+  R    +IE        
Sbjct: 587 DAKKDETSPKGDDDNPSPDSDDGTPGPGRARPVMIHRAIIGSFERFFGILIEHFGGKWPF 646

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                       +           D  E++   L     +V  D  G  +  +     L 
Sbjct: 647 WLSPRQILIVPVMP-------AVYDYVEELQGILRGDKLNVDIDVSGNTLQKKIRNGQLA 699

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
            +    +VG++      V I++R     +     + L+E            R
Sbjct: 700 QYNFIFVVGAQEKETRTVNIRNRDDPSSQAKGSLIPLDEARAKLHALRKERR 751


>gi|156717366|ref|NP_001096223.1| probable threonyl-tRNA synthetase 2, cytoplasmic [Xenopus
           (Silurana) tropicalis]
 gi|123909108|sp|Q0V9S0|SYTC2_XENTR RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           AltName: Full=Threonyl-tRNA synthetase-like protein 2
 gi|111307891|gb|AAI21418.1| tarsl2 protein [Xenopus (Silurana) tropicalis]
          Length = 814

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/449 (16%), Positives = 155/449 (34%), Gaps = 42/449 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H  S G   +LP G    + +   I+ E
Sbjct: 397 KLMKEWEQFQEEAKNRDHRKIGRDQELF--FFHDLSPGSCFFLPRGAHIYNTLTDFIKGE 454

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E++ P + ++ LW  SG +  Y + M       +      P +      +F  
Sbjct: 455 YQIRNFTEVASPNIYNSKLWEMSGHWQHYSENMFSFEVEKET-FALKPMNCPGHCLMFGH 513

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP  F    +  R+EL     G+ R R F   DA+ F    +  +       +
Sbjct: 514 RPRSWRELPLRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTMDQIQEEM--NGCL 571

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +L+  +++   +  +   + P       E                   +       +  
Sbjct: 572 QFLQSVYKVFGFTFQLHLSTRPENYLGEIE-----------------IWNEAEKQLESSL 614

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +       +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 615 NQFGEPWKLNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 667

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 668 SK--DGDDKKRPVIIHRAILGSVERMIAIL---CENYGGKWPFWLSPRQVMVIPVGPS-- 720

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C +  +++   + + G     D D    +  +   A L      ++VG K  +DS V +
Sbjct: 721 -CDEYAQQVCKDVFEAGFMAEVDLDHSCTLNKKIRNAQLAQCNFILVVGEKEKTDSAVNV 779

Query: 419 KHRLTGIREDMSLEEVINYAS--HRFSNN 445
           + R   +  ++ L   I       +  + 
Sbjct: 780 RTRDNKVHGEILLTSAIEKLKTLKKLRSK 808


>gi|295109520|emb|CBL23473.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Ruminococcus
           obeum A2-162]
          Length = 653

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/447 (14%), Positives = 152/447 (34%), Gaps = 35/447 (7%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             ++   + +   RD      ++ + T  +    +G+   +P G   +  +   I +E+ 
Sbjct: 226 LKEHLEQMEEAKRRDHNKLGREMKIFTT-VDVIGQGLPLIMPNGVIMMQELQRWIEDEET 284

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA--MIYGPTHEEVMTDIFRS 120
           + G +    P +  +DL+  SG +D Y   M  L D  +        P        ++++
Sbjct: 285 KRGYVRTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEENDKEVFALRPMTCPFQYYVYKA 344

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  + +    FR+E      G+ R R+F + + +      +  K  +     
Sbjct: 345 EQHSYRDLPLRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLIVRPDQMVKE-FKDCIA 403

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                   LG++             D+++       T   +     +  +          
Sbjct: 404 LAQYCLQVLGVEE------------DVTYHLSKWDPTNREKYIGEPEVWEETEGHIRQML 451

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            ++    +      A Y    D++ + ++    +   +     +      F         
Sbjct: 452 QELNIPFTEDVGEAAFYGPKVDINAKNVY---GKEDTMITIQWDALLAEQFD-------- 500

Query: 300 ATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +   +G      +     +G      A +    +    ++P  + P ++ +I I    
Sbjct: 501 MYYIDENGDKKRPYIIHRTSMGCYERTLAWLI---EKYAGMFPTWLCPEQVRVIPI---S 554

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +      +K+ A++ + G     D   E++G +   A L   P  ++VG+K   + KV +
Sbjct: 555 EKFNAYADKVEAQMKEAGIRCSVDRRSEKMGYKIREARLERVPYMLVVGAKEEEEGKVSV 614

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R  G      L + ++       N 
Sbjct: 615 RSRYLGDEGMKDLGDFMSAIKEEIKNK 641


>gi|255582427|ref|XP_002532001.1| threonyl-tRNA synthetase, putative [Ricinus communis]
 gi|223528332|gb|EEF30374.1| threonyl-tRNA synthetase, putative [Ricinus communis]
          Length = 658

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 71/445 (15%), Positives = 143/445 (32%), Gaps = 58/445 (13%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   +E  R D       L L +  I  +   G+  W P G      +    ++   
Sbjct: 265 KAYLHFKEEAKRRDHRRLGQDLDLFS--IQDEAGGGLVFWHPKGAIVRHIIEDSWKKIHI 322

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                 +  P +  ADLW  SG  D Y + M       D+     P +      +++  +
Sbjct: 323 EHDYDLLYTPHVAKADLWKISGHLDFYRENMYDQMKIEDENYQLRPMNCPYHILVYKRKL 382

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+ P    ++   +R EL     G+ R R F         +  +       ++   Y
Sbjct: 383 NSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQCILVLSFIDLQSG--LLFQLIPRY 440

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +         P+                         + C      FPI  +     D
Sbjct: 441 SPVPSFNSHSFFPVCLS--------------------AILVCLWCTARFPICWKLFSLQD 480

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +++L               DV    L  +           ++    F    ++      T
Sbjct: 481 LLALMHG------------DVEIVLLNHNC---SLKFLMQVD----FNLPQRFD----IT 517

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +  ++ +      +    +G+M     V+    +     +P  ++P ++ ++ +      
Sbjct: 518 YVDSNSEKKRPIMIHRAVLGSMERFFGVLI---EHYAGDFPLWLSPIQVRVLPVT---DT 571

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             + C ++ ++L + G        GE++      A+    PL  +VG K V    V I+ 
Sbjct: 572 QLEYCREVTSKLKENGIRTEL-FHGERLPKLIRNAEKQKIPLMAVVGPKEVETQSVTIRS 630

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R +G    M++++ I+         
Sbjct: 631 RFSGELGTMTIDDFISRIKSAIEKR 655


>gi|19746872|ref|NP_608008.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|81847886|sp|Q8NZB4|SYP_STRP8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|19749114|gb|AAL98507.1| putative prolyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
          Length = 618

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 160/307 (52%), Gaps = 19/307 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R+
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGETQVFCSKDFMDFPIPS 234
           Y  IF R GL    +  + G +GG  S EF+ +       D             D P   
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSIASMDDIPKEV 240

Query: 235 ENTDFDDIISLNSIVEQWTAP-----YAATSDVHN--------EKLFDSLPENKRVSARG 281
                 ++ +     E   A      YAA  ++              D+L E +    + 
Sbjct: 241 LEEIKAELAAWMISGEDTIAYSTESSYAANLEMATNEYKPSSKVAAEDALVEVETPHCKT 300

Query: 282 IEVGHIF 288
           I+    F
Sbjct: 301 IDEVAAF 307



 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 73/199 (36%), Positives = 104/199 (52%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+   V    RGIEVGHIF  GT+YS  M AT    +G+   +
Sbjct: 414 FQAEYVDIREVKEGEMSPDGHGVLQFARGIEVGHIFKLGTRYSDSMGATILDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V +D   K+ A L   G DV  DD  E++GS+F+ +DL+G P++V VG K  ++  VEIK
Sbjct: 534 VAQDLTAKLEADLMAKGYDVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEIK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   +++ E +I   
Sbjct: 593 IKATGDSIEVNAENLIETL 611


>gi|315453026|ref|YP_004073296.1| prolyl-tRNA synthetase [Helicobacter felis ATCC 49179]
 gi|315132078|emb|CBY82706.1| prolyl-tRNA synthetase [Helicobacter felis ATCC 49179]
          Length = 577

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 107/259 (41%), Positives = 147/259 (56%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F P  +E P+DA + SH+ M++ G + Q   G+Y +LPLG K L  + A+++E 
Sbjct: 1   MRFSQLFAPTTKEVPKDAVLKSHQFMVQGGYLQQMGSGLYHFLPLGHKVLSKIRAVVKEV 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E ++  +  A LW ESGR++ YGKE+L   DR +   +  PTHEE +T I +S
Sbjct: 61  MDSYGAQECTLGFVVPASLWQESGRFEQYGKELLSFPDRKNNLCVLSPTHEEAITQIAKS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           HIKSY+ LP   YQI  KFRDE+RPRFG+MR+REF+MKDAYSF  + E     + +M  +
Sbjct: 121 HIKSYKQLPLNLYQIHTKFRDEIRPRFGLMRAREFVMKDAYSFHASTECLDKEFERMHAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL    + A+SG IGG  S EF+VLA  GE  V   +               
Sbjct: 181 YSEIFSRLGLNFRAVEADSGAIGGSKSKEFVVLAACGEDSVIVCQKCNYAANVEIAKRAK 240

Query: 241 DIISLNSIVEQWTAPYAAT 259
                N    Q+   +   
Sbjct: 241 RPEPDNVPKAQFAKFHTPN 259



 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 3/182 (1%)

Query: 261 DVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   +  D+ PE +      R IEVGHIF  G KYS  + A +   +G+  Y +MG YG
Sbjct: 394 DIAQARPEDACPECQGTLSEQRSIEVGHIFKLGNKYSKSLEARYLDQEGQLQYFEMGCYG 453

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A++E + D KG +W  + APF++ ++   + D       E++Y  L   G D
Sbjct: 454 IGVSRLMSAILEQNSDEKGCVWSKTSAPFEVVVLVANSKDSALESLGEELYQELKGAGVD 513

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  ++ G++ A  +L+G    +IVG + +   + E+  R    +  ++ E +++  
Sbjct: 514 VLLDDRIDRFGAKMADFELIGCSHALIVGKQALE-GQFELIARQGLSKRVIAREAIVSTL 572

Query: 439 SH 440
             
Sbjct: 573 LE 574


>gi|321472321|gb|EFX83291.1| hypothetical protein DAPPUDRAFT_127919 [Daphnia pulex]
          Length = 406

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 123/432 (28%), Positives = 206/432 (47%), Gaps = 40/432 (9%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            KL+   G++ Q+S G+++  PLG ++L+ +  I+ +E    G  ++ +P L + +LW  
Sbjct: 5   QKLLNEMGIVRQNSPGLFTLTPLGVRSLEKLVKIVDDELKYVGCQKLQLPILTAGNLWKT 64

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRD 141
           +GR++S G E+L + DR+ +  +  PTHEE +TD   S    +++ LP   YQI  KFRD
Sbjct: 65  TGRWESTGSELLTIKDRHARDYVLSPTHEEAITDFVASLPQLTHKQLPLKLYQITSKFRD 124

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E++PRFG++R REF MKD Y+FD T E +  +Y+ +  +Y RIF RL +  + +   +G 
Sbjct: 125 EIKPRFGLLRGREFTMKDLYTFDKTVEAAHETYDLICTAYNRIFQRLNVPFVKVVGSTGN 184

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           IGG  SHE+   +  GE  +                                    + ++
Sbjct: 185 IGGLSSHEYHFPSSIGEDDLKICSACNS---------------------------GSNAE 217

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
           +    +      +     +GIEV H F  GTKYS  ++A F   DG     QMG YGIG 
Sbjct: 218 IATTDVCSKCG-SPVKQTKGIEVAHTFLLGTKYSQILNALFSAEDGSRSVCQMGCYGIGI 276

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGC-- 377
            R++AA +E       I WP  +AP+ + ++  K  + ++        +  ++ +     
Sbjct: 277 SRILAASVEVLGTDSEIRWPKLIAPYSVCVVAPKGGSKEESAIQLAHFLANQIDQ--IQP 334

Query: 378 ---DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLE 432
              DV  DD     +G +   A  +G+P  ++VG K       VE+       +   ++ 
Sbjct: 335 FMQDVILDDRMTTTVGKKLMEAKRVGYPYIIVVGKKSSQPVPLVELHDLNQNTQNVYTVA 394

Query: 433 EVINYASHRFSN 444
           E+ +Y      N
Sbjct: 395 ELFDYLKQTVKN 406


>gi|159039093|ref|YP_001538346.1| prolyl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|189083509|sp|A8LYE7|SYP_SALAI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157917928|gb|ABV99355.1| prolyl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 584

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 95/226 (42%), Positives = 130/226 (57%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S   L  L+E+P DAE+ SH+L+LR G + + + G Y+WLPLG+  LD V  +IR E 
Sbjct: 4   RMSTLLLRTLREDPADAEVPSHRLLLRAGYLRRAAPGGYTWLPLGKLVLDRVAEVIRTEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              G  E+  P L  A+ +  SGR+  YG +++ L DR     +  PTHEE    + +  
Sbjct: 64  LAIGDQEVHFPALLPAEPYRTSGRWTEYGDDLITLVDRRGAEHLLAPTHEEPAALLVKEL 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SYR+ P   +QIQ KFRDE RPR G++R REFLMKDAYSFDL   G + +Y++   +Y
Sbjct: 124 FTSYRDFPVGIFQIQTKFRDEARPRAGLLRGREFLMKDAYSFDLDEAGLQAAYDRHRSAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            +IF RLGL    + A SG +GG  S EF+  +  GE         
Sbjct: 184 QKIFARLGLDYAVVHAVSGAMGGSASEEFLATSKIGEDVYVGCTAC 229



 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 7/191 (3%)

Query: 258 ATSDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
            T +    +  D  P  +       RGIE+GHIF  G +Y+   +    G +G+     M
Sbjct: 396 GTIEAAEVRPGDPCPACRTGQLTLRRGIEIGHIFQLGRRYTDAFTVDVLGPEGQSVRPTM 455

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R VA + E  HD +G++WP  VAP  + L+          +    +  RL++
Sbjct: 456 GCYGIGVSRAVAVIAEQHHDERGLVWPTEVAPCDVHLVAAGRG--PQVETALGLGNRLAE 513

Query: 375 VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V  DD G    G +F  A+L+G P  V+VG + ++D   E++ R +G R D+ ++ 
Sbjct: 514 AGLRVLVDDRGHVSAGVKFTDAELVGIPRTVVVGRR-LADGYAEVRDRPSGKRADVRVDA 572

Query: 434 VINYASHRFSN 444
           ++ +  +   +
Sbjct: 573 LVEHLVNEVHS 583


>gi|260437371|ref|ZP_05791187.1| threonine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
 gi|292810283|gb|EFF69488.1| threonine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
          Length = 651

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/446 (15%), Positives = 152/446 (34%), Gaps = 35/446 (7%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L  L++  R D      ++ L T  +    +G+   +P G++ +  +   I +E++ 
Sbjct: 227 KAYLEHLEDIKRRDHNKLGREMELFTT-VDVIGQGLPLIMPKGERIIRTLQRWIEDEEDS 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSH 121
            G +    P +  +DL+  SG +D Y   M      +++ +     P        ++++ 
Sbjct: 286 RGYVRTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEEKDKEVFALRPMTCPFQYYVYKAS 345

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            KSYR+LP  + +    FR+E      G+ R R+F + + +      +  K  +      
Sbjct: 346 QKSYRDLPLRYGETSTLFRNEDSGEMHGLTRVRQFTISEGHLIVRPDQMVKE-FKDCIAL 404

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                  LG++       S              A+ G  +     +  +          +
Sbjct: 405 AQYCLRTLGVEEDVTYHLSR----------WDPANPGN-KYIGKPEVWEDTEQHIRNVLN 453

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++           A Y    D++ + ++    +   +     +      F          
Sbjct: 454 ELKIPFVEDIGEAAFYGPKVDINAKNVY---GKEDTMITIQWDALLAEQFD--------M 502

Query: 301 TFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +    G       +    +G      A +    +    ++P  + P ++ ++ I     
Sbjct: 503 YYIDEKGDKVRPYIIHRTSMGCYERTLAWLI---EKYAGMFPTWLCPEQVRVLPISDK-- 557

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  + + A++ +    V  D   E++G +   A L   P  ++VG K      V ++
Sbjct: 558 -YADYADSVAAKIREHKIYVEADHRAEKLGYKIRDARLARVPYILVVGEKEQETGVVSVR 616

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R  G      LE+ IN         
Sbjct: 617 SRFLGDEGQKPLEQFINDICEEIRTK 642


>gi|255514109|gb|EET90372.1| threonyl-tRNA synthetase [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 560

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 130/433 (30%), Gaps = 43/433 (9%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD       L L +    + S  +  W P G+     +   +R  +      E+S P L 
Sbjct: 164 RDHRSIGESLDLYS--FQEVSPSMVYWHPNGRIIYQQLIEFMRGMERLYDYKEISTPALA 221

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           +  LW  SG  D Y   M  + D         P +      I++S   SY+ LPF     
Sbjct: 222 NIALWHVSGHIDYYKDNMF-IIDDGSSEFGLKPMNCPSTILIYKSRRWSYKELPFRTAIF 280

Query: 136 QLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              +R E+     G+ R +E    D + F       K     +     R++   GLK   
Sbjct: 281 DKLYRREVSGALSGLFRVQELTQDDGHIFVSAEGVEKE-ITLLLELVKRVYGVFGLKYY- 338

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            +  + P       E                   D    S     +       I E+  A
Sbjct: 339 AKLSTMPDEHLGDEE-----------------LWDKATESIKRALETNGMKYEIKEKEGA 381

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
            Y    D   E   DS     + +   ++      FG          + G DGK+H   +
Sbjct: 382 FYGPKIDFDIE---DSQGRLWQCATIQLDYQLPKRFG--------IVYTGEDGKEHTPVI 430

Query: 315 GSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               I     R V  ++E       +      A             +      E ++ ++
Sbjct: 431 IHRAILGSIERFVGILVEHYQGKLPLWLSPVQARVISI-------SEENNSYAESVFEKI 483

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G     D     +  +   A +   P  V++G++      + ++ R       + LE
Sbjct: 484 KLEGIRAEMDGSDHTLEYKIRSAQMQKIPYIVVIGNREREKGSISVRMRSGKQENGIKLE 543

Query: 433 EVINYASHRFSNN 445
            ++       S  
Sbjct: 544 PLLESIKKEISAR 556


>gi|322386937|ref|ZP_08060561.1| proline--tRNA ligase [Streptococcus cristatus ATCC 51100]
 gi|321269219|gb|EFX52155.1| proline--tRNA ligase [Streptococcus cristatus ATCC 51100]
          Length = 616

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 110/301 (36%), Positives = 161/301 (53%), Gaps = 14/301 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV----LADTGETQVFCSKDFMDFPIPSEN 236
           Y +IF R  L    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITPDRTDLNRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT-------APYAATSDVHNEKLFDS---LPENKRVSARGIEVGH 286
            +      L  +V           + YAA  ++       +   + E + V     +   
Sbjct: 241 QEEIKAELLKWMVSGEDTIAYSSESSYAANLEMATNAYKPNKKVVTEAELVRVETPDCKT 300

Query: 287 I 287
           I
Sbjct: 301 I 301



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 16/195 (8%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +  +  P+ +     ARGIE+GHIF  GT+YS  M+A     +G+   + MG Y
Sbjct: 419 VDIREVREGEVSPDGQGILKFARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPMIMGCY 478

Query: 318 GIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           GIG  R+++AV+E                   GI +P  +APF + LI +   D+     
Sbjct: 479 GIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDEEALAL 538

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++I A L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K + TG
Sbjct: 539 TDQIEANLLSAGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVKIKATG 597

Query: 425 IREDMSLEEVINYAS 439
              ++  + ++   S
Sbjct: 598 DTIEVHADNLLETLS 612


>gi|126172877|ref|YP_001049026.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS155]
 gi|125996082|gb|ABN60157.1| tRNA synthetase, class II (G, H, P and S) [Shewanella baltica
           OS155]
          Length = 403

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 138/429 (32%), Gaps = 40/429 (9%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
               + +L L        + G+  W P G     ++   +R    R G  E++ P     
Sbjct: 4   HREIAEQLDLF--HSEPQAPGMIFWHPNGWALFRDIQEHMRRVYRRNGFEEVNTPVFMKK 61

Query: 78  DLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           +LW  SG  D + + M     + +    +  P        +F+  + S+R+LP   ++  
Sbjct: 62  ELWQTSGHMDMFAENMFFGGGKENIDEYVLKPMSCPAHILLFKRGVHSHRDLPLRLFEFG 121

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           L  R+E      G +R+R+F   DA+ F      ++           +++   G  ++ +
Sbjct: 122 LVHRNESSGSLNGCLRARQFTQDDAHVFCC-WSQAEEEIRGFLQRAKQVYGDYGYHNLDV 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           +  + P     S E    A        C  +  D    +                   A 
Sbjct: 181 KISTKPEKSLGSDEQWCRAQK-LLDSACHIEGFDAEYQA----------------GEGAF 223

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QM 314
           Y    ++    L DS+    +      +    F    ++       +    G+      M
Sbjct: 224 YGPKIEL---SLTDSMGRRWQCGTIQFD----FNLPERFD----VQYANEQGEFERPVIM 272

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++     ++     G   +W           + I + ++       ++      
Sbjct: 273 HQAMYGSIERWLGILLEVSQGNLPVW------LHPVPVAIASVNESNSQFVRQLATLCLA 326

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V  D     +  +         P  + VG K  ++++V +K R  G+   + L E+
Sbjct: 327 RDIRVLVDISQNSVARKMKRFHKQKVPYILTVGDKEEAENRVSVKCRKDGVITHVPLAEL 386

Query: 435 INYASHRFS 443
            +Y + +  
Sbjct: 387 ADYLADKLE 395


>gi|222874274|gb|EEF11405.1| predicted protein [Populus trichocarpa]
          Length = 191

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 97/189 (51%), Positives = 136/189 (71%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S++F+  L+E P DAE+ SHKLM R G+I +   GIY+++P+G + +  V AI+REE
Sbjct: 1   MKASQFFISTLKEAPADAEVVSHKLMTRAGLIKKLGAGIYNYMPMGLRVIRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            NR GA+E+++P +Q A++W E+GR++  G E+LR+ DR+ +  +  PT EEV+TDI R 
Sbjct: 61  MNRAGAVEVTMPVVQPAEMWEETGRFEKMGPELLRIKDRHGRDFVIQPTSEEVVTDIARQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP  FYQIQ KFRDE RPRFG+MR REF+MKDAYSFD   + ++ SY  M  +
Sbjct: 121 ELKSYKQLPKNFYQIQTKFRDERRPRFGLMRGREFIMKDAYSFDKDRDTAQISYQTMRAA 180

Query: 181 YLRIFHRLG 189
           Y RIF R G
Sbjct: 181 YKRIFDRFG 189


>gi|212697111|ref|ZP_03305239.1| hypothetical protein ANHYDRO_01677 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675886|gb|EEB35493.1| hypothetical protein ANHYDRO_01677 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 447

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 102/232 (43%), Positives = 156/232 (67%), Gaps = 1/232 (0%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+++P+DAE  SHKL++R   I + S G+YS+LPLG + ++ +  I+R+   +  +I
Sbjct: 1   MPTLRDDPQDAETQSHKLLVRGAFIRKTSSGVYSYLPLGMRVINKIENIVRKSMEKYDSI 60

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+S   LQS D+W +SGR+ ++G EM ++ DR+D+    GPT EE  T + +  + SY+ 
Sbjct: 61  EVSTSVLQSKDIWEKSGRWQNFGPEMFKIKDRHDREYCLGPTAEEQFTSLIKDELNSYKQ 120

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   YQI  KFRDE RPRFG+ RSR+F+MKDAYSFD+  EG + SY KM+ +Y+ +F  
Sbjct: 121 LPLNLYQIVSKFRDEKRPRFGINRSRDFIMKDAYSFDVDMEGLEKSYQKMWDAYVEVFDA 180

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           LGL    +  +SG +GG+ SHEF+ LA+TGE ++F +++  D+    E+  F
Sbjct: 181 LGLDYKIVEGDSGAMGGNTSHEFMALAETGEGEIFYTEN-SDYAATDESAKF 231



 Score = 39.0 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 25/44 (56%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            + +   ARGIEVG+IF  GTKYS  + A F   +GK   +  G
Sbjct: 390 GKEELKIARGIEVGNIFQLGTKYSESLEAYFLDENGKQKTIYNG 433


>gi|21911224|ref|NP_665492.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28896602|ref|NP_802952.1| prolyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
 gi|81847409|sp|Q8K5S7|SYP_STRP3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|21905437|gb|AAM80295.1| putative prolyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28811856|dbj|BAC64785.1| putative prolyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
          Length = 618

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 160/307 (52%), Gaps = 19/307 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R+
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGETQVFCSKDFMDFPIPS 234
           Y  IF R GL    +  + G +GG  S EF+ +       D             D P   
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSIASMDDIPKEV 240

Query: 235 ENTDFDDIISLNSIVEQWTAP-----YAATSDVHN--------EKLFDSLPENKRVSARG 281
                 ++ +     E   A      YAA  ++              D+L E +    + 
Sbjct: 241 LEEIKAELAAWMISGEDTIAYSTKSSYAANLEMATNEYKPSSKVAAEDALAEVETPHCKT 300

Query: 282 IEVGHIF 288
           I+    F
Sbjct: 301 IDEVAAF 307



 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 73/199 (36%), Positives = 104/199 (52%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+   V    RGIEVGHIF  GT+YS  M AT    +G+   +
Sbjct: 414 FQAEYVDIREVKEGEMSPDGHGVLQFARGIEVGHIFKLGTRYSDSMGATILDENGRTVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V +D   K+ A L   G DV  DD  E++GS+F+ +DL+G P++V VG K  ++  VEIK
Sbjct: 534 VAQDLTAKLEADLMAKGYDVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEIK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   +++ E +I   
Sbjct: 593 IKATGDSIEVNAENLIETL 611


>gi|225856022|ref|YP_002737533.1| prolyl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|254782921|sp|C1CIE5|SYP_STRZP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225724634|gb|ACO20486.1| prolyl-tRNA synthetase [Streptococcus pneumoniae P1031]
          Length = 617

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKIPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITSARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  IV    
Sbjct: 241 QEEIKAELLKWIVSGED 257



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             +   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTSEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + V+        + +
Sbjct: 593 IKATGDTIEVHADNVLETL--EILSKK 617


>gi|94989304|ref|YP_597405.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94993193|ref|YP_601292.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|114152260|sp|Q1J9R3|SYP_STRPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|114152261|sp|Q1JJW2|SYP_STRPC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94542812|gb|ABF32861.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94546701|gb|ABF36748.1| Prolyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
          Length = 618

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 159/307 (51%), Gaps = 19/307 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGETQVFCSKDFMDFPIPS 234
           Y  IF R GL    +  + G +GG  S EF+ +       D             D P   
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSIASMDDIPKEV 240

Query: 235 ENTDFDDIISLNSIVEQWTAP-----YAATSDVHN--------EKLFDSLPENKRVSARG 281
                 ++ +     E   A      YAA  ++              D+L E +    + 
Sbjct: 241 LEEIKAELAAWMISGEDTIAYSTESSYAANLEMATNEYKPSSKVAAEDALAEVETPHCKT 300

Query: 282 IEVGHIF 288
           I+    F
Sbjct: 301 IDEVAAF 307



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/199 (36%), Positives = 105/199 (52%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+   V    RGIEVGHIF  GT+YS  M AT    +G+   +
Sbjct: 414 FQAEYVDIREVKEGEMSPDGHGVLQFARGIEVGHIFKLGTRYSDSMGATILDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   G+ +P  +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWGVNFPKELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V +D   K+ A L+  G DV  DD  E++GS+F+ +DL+G P++V VG K  ++  VEIK
Sbjct: 534 VAQDLTAKLEADLTAKGYDVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEIK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   +++ E +I   
Sbjct: 593 IKATGASIEVNAENLIETL 611


>gi|48477666|ref|YP_023372.1| threonyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|48430314|gb|AAT43179.1| threonyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 710

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 76/466 (16%), Positives = 152/466 (32%), Gaps = 44/466 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++     +   RD      ++ L      + + G+  + P G    + +   + E   
Sbjct: 260 LNEFLKNREEAMKRDHRRIGQEMDLFI-FDTERAPGMPFYTPNGAVIRNELIKYMGEINA 318

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R    E+    +    +W +SG YD Y  +M      N +     P +      IF+  I
Sbjct: 319 RNNWQEVWTAHVFRDLIWKQSGHYDKYKNDMFLFQLENGEHYGLKPMNCPGHITIFQRGI 378

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKH------SYN 175
            SYR++P  + +    +R E      G+ R R F + D + F    +  +         +
Sbjct: 379 YSYRDMPVKYCEPGTVYRYEKSGEMGGLTRPRGFTIDDGHGFLRQDQILEEVSSLLGMIH 438

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE-----FIVLADTGETQVFCSKD---- 226
           ++F + L         S+  +        +         F++ A  G +++ C K     
Sbjct: 439 EVFNTILGNVEFSFDLSVMDKNSPENYLIEYKCRNCGNVFMLRA--GSSKIECPKCSSKD 496

Query: 227 ------FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                   D    +     +             A Y    DVH   + D+L    ++S  
Sbjct: 497 LEMDFSMWDAATENLRKALESRNLNYKEYPGEAAFYGPKIDVH---VKDALNRFWQLSTI 553

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGII 339
            ++      F           +  +DGK      +     G+     A++   ++GK   
Sbjct: 554 QLDFFMPINFD--------LYYINSDGKKERPVIIHRAIYGSYERFIAILLEHYNGKLPT 605

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W   +  + I +       +   +  E I +   K       D   E I  +  +   + 
Sbjct: 606 WLSPIQSYVIPV------SENYNEYAESINSLFVKNNIRSKIDLSSETISKKIKMIRKMR 659

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
               ++VG K   +  V I++R      +M + E I       S+ 
Sbjct: 660 PSYIIVVGEKEEHNKSVSIRNRKDK-TIEMPVNEFIEKIKDEISSR 704


>gi|225026720|ref|ZP_03715912.1| hypothetical protein EUBHAL_00972 [Eubacterium hallii DSM 3353]
 gi|224955955|gb|EEG37164.1| hypothetical protein EUBHAL_00972 [Eubacterium hallii DSM 3353]
          Length = 650

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 150/444 (33%), Gaps = 37/444 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE-EQNRTG 65
           L  L+E   RD      ++ L T  +    +G+   LP G K +  +   I + E N  G
Sbjct: 230 LKYLEEIKLRDHNRLGREMELFTT-VDVIGQGLPLLLPKGAKIIQTLQRWIEDLEDNEWG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA--MIYGPTHEEVMTDIFRSHIK 123
            +    P +  +DL+  SG +D Y + M  L D  +    +   P         +++  K
Sbjct: 289 YVRTKTPLMAKSDLYKISGHWDHYKEGMFVLGDEENDKEVLALRPMTCPFQYYCYKNTQK 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP+   +    FR+E      G+ R R+F + + +      + +            
Sbjct: 349 SYRDLPYRMSETSTLFRNEDSGEMHGLTRVRQFTISEGHLIIRPDQTNDEL--------- 399

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
               +  L           +  D+++         + +     ++ +    +      D 
Sbjct: 400 ----KGCLHLAQYCLGVLGVQDDVTYRLSKWDPNNKEKYLGDDEYWETTQDAIRNILVDQ 455

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    D+  + ++      K  +   I            +      +
Sbjct: 456 GVPFVEAEGEAAFYGPKIDIQAKNVY-----GKEDTMITI------QLDCAIAENFDMYY 504

Query: 303 KGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              +G       +    +G      A +    +     +P  + P ++ ++ I    +  
Sbjct: 505 IDQNGDKQRPYVIHRTSMGCYERTLAWLI---EKYAGKFPTWLCPEQVRVLPI---SEKF 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  E++   L + G     D+  E+IG +   A L   P  ++VG++     KV ++ R
Sbjct: 559 ADYAEEVNKELKRNGILSTVDNRSEKIGYKIREARLQKLPYMLVVGAQEQETGKVSVRSR 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G      L++ I+         
Sbjct: 619 FAGDEGQKDLKDFISAICEEIRTK 642


>gi|148988673|ref|ZP_01820106.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|147925874|gb|EDK76949.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
          Length = 600

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/392 (17%), Positives = 135/392 (34%), Gaps = 33/392 (8%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L + +E   RD      +L L   MI  +  +G+  WLP G      +   I  ++ 
Sbjct: 229 KNYLQMREEAKERDHRKLGKELDLF--MISQEVGQGLPFWLPNGATIRRELERYIVNKEL 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSH 121
            +G   +  P L S +L+  SG +D Y ++M    D  D +  +  P +      +F+ H
Sbjct: 287 ASGYQHVYTPPLASVELYKTSGHWDHYQEDMFPTMDMGDGEEFVLRPMNCPHHIQVFKHH 346

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           + SYR LP    +I +  R E       ++    +  +     +TPE  +  + +     
Sbjct: 347 VHSYRELPIRIAEIGMMHRYEKSGALTGLQRVREMSLNDGHLFVTPEQIQEEFQRALQLI 406

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + ++    L     R            +     D  E          +          D+
Sbjct: 407 IDVYEDFNLTDYRFRLSLRD-----PQDTHKYFDNDEM--------WENAQTMLRAALDE 453

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E   A Y    D+   ++  +L + + +S   ++    F    ++       
Sbjct: 454 MGVDYFEAEGEAAFYGPKLDI---QIKTALGKEETLSTIQLD----FLLPERFD----LK 502

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           + GADG+DH   M   G+ +       I   +         +     +    I   ++  
Sbjct: 503 YIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTL----IPVSNEKH 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            D   ++  +L   G     D+  E++  +  
Sbjct: 559 VDYAWEVAKKLRDRGVRADVDERNEKMQFKIR 590


>gi|332523321|ref|ZP_08399573.1| proline--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
 gi|332314585|gb|EGJ27570.1| proline--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
          Length = 617

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 100/242 (41%), Positives = 148/242 (61%), Gaps = 2/242 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S GIY++LPL  + ++ +  I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGIYAYLPLANRTIEKLKGIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG+++ +L +R     I GPTHEE  T + R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRESSDFILGPTHEETFTTLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHQNDEDLDITYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   +  + G +GG  S EF+ +    +         +D  IP+  +  +
Sbjct: 181 YEAIFTRAGLEFKGIIGDGGAMGGKDSQEFMAITP--DRTDLNRWLVLDKSIPNLESIPE 238

Query: 241 DI 242
           D+
Sbjct: 239 DV 240



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 16/217 (7%)

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKY 294
           T  +        V      +A   D+   K  +  P+   V    RGIE+GHIF  GT+Y
Sbjct: 396 TGANKDGYHLIGVNPERDFHAEYVDIREVKEGEISPDGHGVLRFARGIEIGHIFKLGTRY 455

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-------------GKGIIWP 341
           S  + AT    +G+   + MG YGIG  R+++AVIE                   GI +P
Sbjct: 456 SKSLGATILDENGRAVPIVMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRFAWGINFP 515

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           + +APF + LI +   DQ  +D   K+   L   G +V  DD  E++GS+F+ +DL+G P
Sbjct: 516 EELAPFDVHLITVNTKDQDAQDLTSKVEHDLMTKGYEVLTDDRNERVGSKFSDSDLIGLP 575

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +++ VG K  S+  VEIK + +G   ++  + +I   
Sbjct: 576 IRITVGKK-ASEGIVEIKIKASGDSIEVHADNIIETL 611


>gi|47221603|emb|CAF97868.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 604

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 76/470 (16%), Positives = 149/470 (31%), Gaps = 41/470 (8%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK  L ++++    + I  ++        +  S G   +LP G    + +   I+ E  R
Sbjct: 142 SKLRLQLIEDQTSGSSITVYRHDQELFFFNDVSPGSCFFLPKGAHIYNTLTDFIKGEYRR 201

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  PTL S  LW  SG ++ Y   M  +           P +      +F   ++
Sbjct: 202 RGFTEVVTPTLYSTALWERSGHWEHYSDNMFTVTSEGSHTYALKPMNCPAHCLMFEQRVR 261

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           S++ LP  +       R+EL     G+ R R F   DA+ F    +      +       
Sbjct: 262 SWKELPLRWADFGALHRNELSGALGGLTRVRRFCQDDAHIFCAPEQLETEIVSC-LDFVR 320

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF------------ 230
            ++   G     +   + P       E    A+ G                         
Sbjct: 321 HVYQVFGFSFHCL-LSTRPTPCLGEPEQWDNAEQGAAAGEEPAAVWPTLGAEPRRRSLLW 379

Query: 231 ----------PIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPENKRV 277
                     P P          S +S  E        +       + ++ D++    + 
Sbjct: 380 TKGEQEEDLGPGPGRRRSVGYFTSQSSPDEGEEGRQTRSCVLSPQIDIQIRDAIGRQHQC 439

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGK 336
           +   ++    F    ++       + G DG+ H    +    +G++  + A++    +  
Sbjct: 440 ATIQLD----FQLPLRFD----LQYVGPDGQLHRPVMIHRAVLGSLERMIAILA---ENF 488

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVA 395
           G  WP  ++P ++ +I +    +        +       G  V  + D G  +  +   A
Sbjct: 489 GGKWPLWLSPAQVMVIPVGGDSESYSKQVSGVVQEFRHAGFMVDLNSDQGATLNKKIRSA 548

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            L  +    +VG K      V ++ R          EEV+   +      
Sbjct: 549 QLSQYNYIFVVGEKESESRTVSVRSRGGKQLGRRPTEEVLTSLTQLRDAR 598


>gi|254579094|ref|XP_002495533.1| ZYRO0B13596p [Zygosaccharomyces rouxii]
 gi|238938423|emb|CAR26600.1| ZYRO0B13596p [Zygosaccharomyces rouxii]
          Length = 454

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 158/451 (35%), Gaps = 49/451 (10%)

Query: 16  RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIR-EEQNRTGAIEMSVPT 73
              E+++ + +     I    S G   +LP G K  + +   ++ ++Q + G  E+  P 
Sbjct: 33  ASHEVSNRQKL----FITDPISPGSIFFLPNGTKIFNKLIQFMKLQQQFKYGFKEVVTPL 88

Query: 74  LQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           +    LW +SG +D+Y ++M R+   D + +     P +      +F+   +SY  LP  
Sbjct: 89  IYRKSLWEQSGHWDNYKEDMFRVEGHDTSKEEYGLKPMNCPGHCMVFKRFDRSYSELPLR 148

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                   R+E      G+ R R+F   D + F  TP+  +    K        + ++  
Sbjct: 149 LSDFSPLHRNEASGALSGLTRVRKFHQDDGHIFC-TPDQVESEIAKCLKLVDMCYTKVFP 207

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            S  +  E   +      E                   D+         +       + E
Sbjct: 208 LSPELANEVYTLELSTRPE----------HFIGDVKVWDYAETVLKNILNKFGKPWELNE 257

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+   K+ D   +  +V+   ++    F    ++       +K  D    
Sbjct: 258 ADGAFYGPKIDI---KVTDHTGKYHQVATIQLD----FQLPERFD----LKYKDRDNTYK 306

Query: 311 YV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +     G++    A++    D     WP  + P +  +I +    Q   DAC+ ++
Sbjct: 307 RPIMIHRAVFGSVERFMAILI---DSNHGKWPFWLNPRQAMIIPVNTKRQGQVDACKDLF 363

Query: 370 ARLSKVG--------------CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
            +L   G               +   D+  E +G +   A +  +   +I+G K V   +
Sbjct: 364 LKLRGQGNENSTDPIPLNSFHFNADLDERPEPVGYRIKDALMKNYSYLIIIGDKEVETGR 423

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             I+ R     E ++ +E+ N       + +
Sbjct: 424 YAIRTREDRQLEHLTDDEIFNKFRELEKHYK 454


>gi|15790739|ref|NP_280563.1| threonyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|10581281|gb|AAG20043.1| threonyl-tRNA synthetase [Halobacterium sp. NRC-1]
          Length = 650

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 138/446 (30%), Gaps = 46/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +Y     +   RD      ++ L +  I      G+  + P G+  L  ++  +R   + 
Sbjct: 240 EYLARREEAKERDHRKLGREMDLFS--IPDVTGPGLPLYHPNGKTVLRELSEYVRGLNSE 297

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L   +LW +SG YD+Y  +M  L D ND+     P +      IF     
Sbjct: 298 MGYDEVETPHLFRTELWKQSGHYDNYVDDMF-LLDVNDEEYGLKPMNCPGHATIFNEGSW 356

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  +++    +R E R    G+ R   F + D + F    +              
Sbjct: 357 SYRDLPVRYFEDGKVYRKEQRGELSGLSRVWAFTIDDGHVFARADQIEAEV--------- 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
               R  + +I    ++  +      ++ V   T   +   S D  +          D  
Sbjct: 408 ----RRLMDTITEVLDTFDL------DYEVALATRPEKSVGSDDIWEQSERQLREVLDQQ 457

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    D   E   D+L  +       ++    F    ++       +
Sbjct: 458 GVDYDVEPGDGAFYGPKIDFGFE---DALGRSWDGPTVQLD----FNMPDRFD----LEY 506

Query: 303 KGADGKDHYV-QMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            G+D   H    +     G+  R    +IE  +                           
Sbjct: 507 TGSDNDAHQPVMIHRALYGSYERFFMVLIEHYNGRFPTWLAPEQVRILPVT-------DD 559

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++   L      V  +D    +G +   A     P  ++VG        V ++ 
Sbjct: 560 NLGYAHRVKNELGD--YRVEVEDRDWTVGKKIQQAHDDNVPYMLVVGDDEEDADAVSVRD 617

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R     + + L E   +        R
Sbjct: 618 RQEREGKGVDLAEFRAHLDSEVDGKR 643


>gi|15902287|ref|NP_357837.1| prolyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|116515963|ref|YP_815764.1| prolyl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|81845175|sp|Q8DRB0|SYP_STRR6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|122279350|sp|Q04MI4|SYP_STRP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|15457791|gb|AAK99047.1| Prolyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|116076539|gb|ABJ54259.1| prolyl-tRNA synthetase [Streptococcus pneumoniae D39]
          Length = 617

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 146/257 (56%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITSARTDLDRWVVLDKSVVSFDEIPVEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  IV    
Sbjct: 241 QEEIKAELLKWIVSGED 257



 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + V+        + +
Sbjct: 593 IKATGDTIEVHADNVLETL--EILSKK 617


>gi|169236481|ref|YP_001689681.1| threonyl-tRNA synthetase [Halobacterium salinarum R1]
 gi|73921305|sp|Q9HP27|SYT_HALSA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229470722|sp|B0R6G6|SYT_HALS3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167727547|emb|CAP14335.1| threonine--tRNA ligase [Halobacterium salinarum R1]
          Length = 640

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 138/446 (30%), Gaps = 46/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +Y     +   RD      ++ L +  I      G+  + P G+  L  ++  +R   + 
Sbjct: 230 EYLARREEAKERDHRKLGREMDLFS--IPDVTGPGLPLYHPNGKTVLRELSEYVRGLNSE 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L   +LW +SG YD+Y  +M  L D ND+     P +      IF     
Sbjct: 288 MGYDEVETPHLFRTELWKQSGHYDNYVDDMF-LLDVNDEEYGLKPMNCPGHATIFNEGSW 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  +++    +R E R    G+ R   F + D + F    +              
Sbjct: 347 SYRDLPVRYFEDGKVYRKEQRGELSGLSRVWAFTIDDGHVFARADQIEAEV--------- 397

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
               R  + +I    ++  +      ++ V   T   +   S D  +          D  
Sbjct: 398 ----RRLMDTITEVLDTFDL------DYEVALATRPEKSVGSDDIWEQSERQLREVLDQQ 447

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    D   E   D+L  +       ++    F    ++       +
Sbjct: 448 GVDYDVEPGDGAFYGPKIDFGFE---DALGRSWDGPTVQLD----FNMPDRFD----LEY 496

Query: 303 KGADGKDHYV-QMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            G+D   H    +     G+  R    +IE  +                           
Sbjct: 497 TGSDNDAHQPVMIHRALYGSYERFFMVLIEHYNGRFPTWLAPEQVRILPVT-------DD 549

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++   L      V  +D    +G +   A     P  ++VG        V ++ 
Sbjct: 550 NLGYAHRVKNELGD--YRVEVEDRDWTVGKKIQQAHDDNVPYMLVVGDDEEDADAVSVRD 607

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R     + + L E   +        R
Sbjct: 608 RQEREGKGVDLAEFRAHLDSEVDGKR 633


>gi|82753545|ref|XP_727721.1| threonyl-tRNA synthetase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483702|gb|EAA19286.1| threonyl-tRNA synthetase, putative [Plasmodium yoelii yoelii]
          Length = 930

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 80/483 (16%), Positives = 144/483 (29%), Gaps = 72/483 (14%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            + Y   I +   RD       L L      + S G   W   G K  + +   +R+E  
Sbjct: 463 LTDYIKFIEEAKKRDHRNVGKNLNLF-FFEKETSPGSGFWFSHGAKIYNKLIEFMRKEYR 521

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
                E+  P + S DLW  SG Y +Y   M  + +  +K     P +      IF+   
Sbjct: 522 IRKYDEVITPNIFSCDLWKTSGHYQNYKNCMF-IFNIENKEWGMKPMNCPGHCLIFKQLN 580

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SY++LP       +  R+E+     G+ R R F   DA+ F             +    
Sbjct: 581 ASYKSLPIRLADFGVLHRNEITGSLSGLTRVRRFQQDDAHIFCSLDHIKTE-VVNVLQFI 639

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +++  G K   +   + P       E                   DF   S     + 
Sbjct: 640 FFVYNLFGFKY-DLYLSTRPPKYIGDIE-----------------TWDFAEKSLKEALEL 681

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMS 299
                 + E   A Y    D+    L DSL  + +     ++      F    K      
Sbjct: 682 ANVKWKLNEGDGAFYGPKIDI---VLRDSLNRSHQCGTVQLDFQLPIRFNLQYKNKEYGV 738

Query: 300 ATFKG--------------------------------------ADGKDHYVQMGSYGIGA 321
                                                        G D  + +    +G+
Sbjct: 739 GQETDSNLVNNSNTDVIEKKEDSTLENIDNNQDPINNQPGGVLKKGFDRPIIIHRAILGS 798

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +    A++     GK   W        + +           +  + I+  L+    DV  
Sbjct: 799 VERFVAILVEHTSGKFPFWLSPRQAIVLPI------SDKFNEYAKYIHTVLTNNLFDVDV 852

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMSLEEVINYASH 440
           D     +  +   A L  +   ++VG K +S + V ++ R     ++  +++E++N    
Sbjct: 853 DISVNTLNKKIREAQLKQYNFILVVGEKEISTNTVTVRDRDNPNDQKVYTVQELVNTFKK 912

Query: 441 RFS 443
              
Sbjct: 913 MLD 915


>gi|313898260|ref|ZP_07831797.1| proline--tRNA ligase [Clostridium sp. HGF2]
 gi|312956642|gb|EFR38273.1| proline--tRNA ligase [Clostridium sp. HGF2]
          Length = 564

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 144/243 (59%), Gaps = 1/243 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK +   L+EN +D +  S  L++R GMI + S GIY  +P+G++ L  +  I+REE
Sbjct: 1   MKLSKSYFYTLRENVKDEDSTSGNLLVRAGMIKKSSSGIYMIMPMGKRVLKKIEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +   +++ +SGR +++G  M  L DR  K  + GPTHEE+ T     
Sbjct: 61  MDAAGAQELLMPAMIPEEIYEKSGRREAFGSNMFALKDRYQKNYVLGPTHEELFTMAAMM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P+  YQIQ KFRDE RPR+G++R REF+MKDAYSFD+   G + SY KMF +
Sbjct: 121 KGSSYKDFPYNLYQIQTKFRDETRPRYGLIRVREFIMKDAYSFDIDEAGLQESYMKMFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  R  L    ++A++G +GG LS EF  + + GE  V   +   DF    E T+  
Sbjct: 181 YKNIMDRCNLNYKIVKADTGAMGGSLSEEFQAITEIGEDVVVTCEGC-DFSSNLEITEVI 239

Query: 241 DII 243
           D  
Sbjct: 240 DTG 242



 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 5/229 (2%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--K 275
           E  +   ++  +        +  D    N  ++ +T      +D+      D  P+    
Sbjct: 339 ECPIIMDREVANMKNFIVGANKTDHHIKNVNLKDFTV--ETVADIAQVHEGDICPKCGKP 396

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               +GIEVG+ F  GTKY+  +   ++  + K H V+MG YG G  R +AA++E  +D 
Sbjct: 397 LKFCKGIEVGNTFKLGTKYAKALGLEYQDVNNKLHPVEMGCYGFGLERCMAAIVEQHNDA 456

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            GIIWP SVAPF+++++ + + D        ++Y  L K G DV  DD  E+ G +F   
Sbjct: 457 SGIIWPTSVAPFEVAVVVVSSKDDEQMRIGNELYEALKKEGIDVLLDDRKERPGVKFKDM 516

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +L+G P ++ VG + + D  VE + R      D+SL E+++        
Sbjct: 517 ELIGIPYRITVG-RGIKDGNVEFRARTADESSDVSLHEIVDMVKKELQK 564


>gi|68468847|ref|XP_721482.1| hypothetical protein CaO19.2984 [Candida albicans SC5314]
 gi|68469391|ref|XP_721210.1| hypothetical protein CaO19.10501 [Candida albicans SC5314]
 gi|46443119|gb|EAL02403.1| hypothetical protein CaO19.10501 [Candida albicans SC5314]
 gi|46443402|gb|EAL02684.1| hypothetical protein CaO19.2984 [Candida albicans SC5314]
          Length = 455

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 75/461 (16%), Positives = 153/461 (33%), Gaps = 67/461 (14%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
            +  I+S +L+  T      S G   +LP G + L+ +   ++ +Q + G  E+  P + 
Sbjct: 32  SNHVISSKQLLYTT---DPTSPGSIFFLPHGTRILNKLIQFMKNQQTKYGFQEVVTPLIF 88

Query: 76  SADLWVESGRYDSYGKEMLR-----------LADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              LW +SG +D+Y  +M +             +  +      P +      IF    +S
Sbjct: 89  KTKLWKKSGHWDNYKDDMFKVVGNDITKEEYTDNIEEHEYGLKPMNCPSHCMIFAKFDRS 148

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y+ LP  +       R+E      G+ R R F   D + F    +               
Sbjct: 149 YQELPVRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHIFCSMDQIDGE-IKNTLELIKD 207

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            ++  G+  I     + P                E +     +  D          +   
Sbjct: 208 TYNVFGINEIEFYLSTRP----------------EDKFIGEIETWDIAESQLKNVLNSTA 251

Query: 244 SLNSIV--EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
              +    E   A Y    DV    L D+  +  +V    ++    F    ++       
Sbjct: 252 GEGNWATREGDGAFYGPKIDVL---LKDAFNKKHQVGTIQLD----FQLPNRF----ELK 300

Query: 302 FKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG      + +     G++    A++    D     WP  + P +  ++ I    +
Sbjct: 301 YVGEDGKRDHQPILVHRAVFGSLERFFAILL---DHYQGKWPFWINPRQALIVPIN---E 354

Query: 360 VCRDACEKIYARLSKV--------------GCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
                 E++  +LS                   V  D  GE +G++   A   G+   ++
Sbjct: 355 SHVPVAEELQKKLSGNIVSCDNAIAPLTGFNFHVDIDKRGETVGARTKDAIQKGYSYLIM 414

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +G K +++    ++ R     ++M+ +E+         + +
Sbjct: 415 IGDKDIANGTFAVRSRDDRKIKNMTSDEIYKMFIALEQSYK 455


>gi|182683244|ref|YP_001834991.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|303259373|ref|ZP_07345350.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|303261128|ref|ZP_07347077.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|303263456|ref|ZP_07349379.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS397]
 gi|303265748|ref|ZP_07351646.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|303267821|ref|ZP_07353623.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|226701345|sp|B2ISI9|SYP_STRPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|182628578|gb|ACB89526.1| prolyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|302637965|gb|EFL68451.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|302639307|gb|EFL69765.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|302642517|gb|EFL72862.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302644656|gb|EFL74905.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|302647229|gb|EFL77453.1| prolyl-tRNA synthetase [Streptococcus pneumoniae BS397]
          Length = 617

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 105/257 (40%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT----GETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+ +           V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITSARTALDRWVVLDKSVVSFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  IV    
Sbjct: 241 QEEIKAELLKWIVSGED 257



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-ATDGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + V+        + +
Sbjct: 593 IKATGDTIEVHADNVLETL--EILSKK 617


>gi|312218414|emb|CBX98360.1| similar to threonyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 784

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 75/492 (15%), Positives = 139/492 (28%), Gaps = 76/492 (15%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           +  L  L+E   RD         L     H+ S G   +LP GQ   + + A +REE   
Sbjct: 314 QAHLKFLEEAAKRDHRKIGKDQELF--FFHEFSPGSCFFLPHGQIIYNTLQAFLREEYWN 371

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P + ++ LW  SG +  Y  +M    D   +     P +      IF+   +
Sbjct: 372 RGYQEVGSPNMYNSALWKISGHWQHYADDMFTF-DVEKEKWALKPMNCPGHCLIFKHRER 430

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR LP       +  R+E       +       +D      T +        +F     
Sbjct: 431 SYRELPIRMADFGILHRNEASGALTGLTRVRRFQQDDTHVFCTQDQINEEILALFDFLKA 490

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++ + G     ++  + P G     +    A+                  + +       
Sbjct: 491 VYGKFGFTFK-LKLSTRPEGFLGDIDTWNQAEAKL-------------TQALDEFTAGGG 536

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSAT 301
               +     A Y    D+    + D+L    + +   ++      F      S   +  
Sbjct: 537 GAWELNPGDGAFYGPKIDI---TISDALKREFQCATIQLDFQLPNQFELEYMTSEGAATK 593

Query: 302 FKGA-------------------------------------------DGKDHYVQMGSYG 318
            K                                              G    V +    
Sbjct: 594 PKEEKVKAEQQKVEKKAEQPKEKDHIDQKKDNLGGQVAIPKEIRPPQPGYARPVMIHRAI 653

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G+     A++     G+   W        I ++          D  +++ A L K    
Sbjct: 654 YGSFERFIAILTEHFAGRWPFWLSPRQVMVIPVMP------SANDYVKEVQAELRKHHLH 707

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR----EDMSLEEV 434
              D  G  +  +   A L  +   ++VG++      V  ++R         E + L+E 
Sbjct: 708 ADIDISGNTMQKKIRTAQLSLYNFIMVVGAEEQKARAVNWRNRDDQETQQRGEIVPLDEA 767

Query: 435 INYASHRFSNNR 446
           +          R
Sbjct: 768 VKKLVQLRDERR 779


>gi|260757797|ref|ZP_05870145.1| prolyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|260668115|gb|EEX55055.1| prolyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
          Length = 232

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 111/231 (48%), Positives = 156/231 (67%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           ++LA+TGE+QV+C + ++D  +P  +TDF +   L  IV +WT PYAAT ++H+E  +  
Sbjct: 1   MILAETGESQVYCDRAYLDLAVPGADTDFRNDAQLTDIVTRWTTPYAATDEMHDEADWAK 60

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +    +VSARGIEVGHIF+FGTKYS PM A  +G DGK+H V MGSYGIG  R+VAA IE
Sbjct: 61  VKPESQVSARGIEVGHIFHFGTKYSEPMGAKVQGPDGKEHLVSMGSYGIGPSRLVAAAIE 120

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +SHD  GIIWP ++APF   ++N+K  D+ C    EK+Y  L+  G D   DD  E+ G+
Sbjct: 121 ASHDDAGIIWPKTIAPFGAGIVNMKPGDEGCDGVSEKLYEALTNAGVDPLLDDKDERPGA 180

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +FA  DL+G P QVIVG + V+  +VE+K R TG R+ + ++  IN  + +
Sbjct: 181 KFATMDLIGLPTQVIVGPRGVAAGEVEVKDRKTGERQSLGIKAAINMLTAQ 231


>gi|313681998|ref|YP_004059736.1| prolyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994]
 gi|313154858|gb|ADR33536.1| prolyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994]
          Length = 567

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 100/228 (43%), Positives = 142/228 (62%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++P  +E P+DA++ SH  + R G + Q + G+Y++LP+G++ L  +  II EE
Sbjct: 1   MRFSKAYIPTTKEAPKDAQLPSHIYLSRAGFVTQVAAGLYNFLPMGKRVLRKIETIINEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A E+ +  +  A+LW ESGR + +GKE+LR  DR D   + GPTHEE+M +I R+
Sbjct: 61  MAACDAQEVDLSFVTPAELWEESGRIEKFGKELLRFRDRKDNLFVLGPTHEEMMVNIVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI+ KFRDE RPRFG+MR REF+MKD YSF  + E     ++ M  +
Sbjct: 121 RVTSYKQLPLNLYQIKTKFRDEARPRFGLMRGREFVMKDGYSFHSSNEDLDREFDAMEAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
           Y RI  RLGL+   + A+SG IGG  S E +VLA +GE  +       
Sbjct: 181 YKRILERLGLEFRIVEADSGAIGGTGSKELMVLAGSGEDTLAICDSCE 228



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 100/187 (53%), Gaps = 3/187 (1%)

Query: 257 AATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A  +D+ + +  D  P    K +  +GIEVGHIF  GT YS P+ A F   +G+     M
Sbjct: 380 AHFADLVSVQEGDGCPHCGGKILHTKGIEVGHIFKLGTVYSAPLKAEFLDENGRSQPFIM 439

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G+YG+G  R+VAAVIE  HD KG IW  + AP+ ++++     ++      E++YA L  
Sbjct: 440 GTYGMGVSRLVAAVIEQHHDEKGCIWTHATAPYLVNVMVSNIKEESHMAYAEELYASLQS 499

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +   DD  E+ G + + A+L+GFP  VIVG K + +  V+I  R T     +   +V
Sbjct: 500 RGIETMLDDRKERFGFKMSDAELIGFPYTVIVG-KELENGSVQIMVRATREMITVDAADV 558

Query: 435 INYASHR 441
           ++     
Sbjct: 559 LSKIEEL 565


>gi|119025474|ref|YP_909319.1| prolyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
 gi|152112217|sp|A1A0K4|SYP_BIFAA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118765058|dbj|BAF39237.1| prolyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
          Length = 605

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 103/283 (36%), Positives = 153/283 (54%), Gaps = 2/283 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DA++ S KL+ R   + + + GI++WLPLG   L+ +  IIREE  
Sbjct: 1   MSTMFLRTLREDPADADVVSDKLLQRACYLRKAAPGIWTWLPLGLNVLNKIENIIREEMA 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
              A E+    L   + +  + R++ YG  + RL DR++   +  PTHEE+ T + +   
Sbjct: 61  SIDAQEVHFSGLLPREPYEATHRWEEYGDNIFRLKDRHEADYLLAPTHEEMFTLLVKDLY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++LP T YQIQ K+RDE RPR G++R REF+MKDAYSF L  EG   +Y     +Y 
Sbjct: 121 SSYKDLPVTLYQIQTKYRDEFRPRAGLIRGREFIMKDAYSFTLDKEGLVKAYMDERGAYE 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           RIF+RL LK +P+ A +GP+GG  S EF+   + GE     S     + + +  T   + 
Sbjct: 181 RIFNRLDLKYVPVHAMAGPMGGFESEEFLAPMEIGEDTFAQSPSGKAWNVEALTTPEPEA 240

Query: 243 I--SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
           I  +     E+   P AAT D   E    + P +     +  +
Sbjct: 241 IDFTATPAAEKRPTPDAATIDKMVEFANANHPRSDGRDWQASD 283



 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 4/189 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+        RG+E+G +F  G KYS  +       +GK   V MG
Sbjct: 414 GTVEAVQVRHGDMSPDGSGPLSFERGVEIGQVFQLGLKYSNALGLKVLDQNGKTVPVWMG 473

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+A + E+ HD KG+ W  +V       +     D    +A E++   L   
Sbjct: 474 SYGIGVSRVMACIAETHHDEKGLAW-PAVIAPAQVHVVATGKDAAAFEAAEQLIGELEAK 532

Query: 376 GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G +V +DD  +   G +F  A+L+G P+  + G   V++  +E++ R     E + + + 
Sbjct: 533 GIEVIFDDRKKVSPGVKFKDAELIGVPIIAVAGRDTVNNGTIEVRDRNGENAEAVPVADA 592

Query: 435 INYASHRFS 443
               + R +
Sbjct: 593 AQAIADRVA 601


>gi|326936120|ref|XP_003214106.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial-like, partial
           [Meleagris gallopavo]
          Length = 550

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 129/434 (29%), Gaps = 61/434 (14%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      +  L     H  S G   +LP G    + +   IR E    G  E+  P + 
Sbjct: 170 RDHRRIGKEQELF--FFHALSPGSCFFLPRGAHIYNTLIDFIRSEYQARGFSEVVTPNIF 227

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           S  LW  SG +  Y   M       +  +   P +      +F    +S+R LP      
Sbjct: 228 SPRLWELSGHWQHYSAHMFSFTAGTET-LSLKPMNCPAHCLMFAHRPRSWRELPLRLADF 286

Query: 136 QLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
            +  R+E      G+ R R F   DA+ F    +               I+  LG     
Sbjct: 287 GVLHRNEPPGSLTGLTRVRRFQQDDAHIFCALEQLEAE-IGACLDFVRSIYATLGFSFQM 345

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
             A                  T            D           D      + +   A
Sbjct: 346 ALA------------------TRPDGFLGDAATWDRAEQQLEKSLQDFGEPWELSQGDGA 387

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
            Y    D+    + D+L  + +     ++      FG +Y+         A G    V +
Sbjct: 388 FYGPKIDIR---IQDALGRHHQCGTIQLDFQMPERFGLEYA-------SAAGGTARPVLI 437

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               +G++  + AV+  S  GK                               ++A L +
Sbjct: 438 HRAVLGSVERMVAVMAESCGGKWGT---------------------------SVHAMLRR 470

Query: 375 VGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G     D D G  +G +   A L  +  Q++VG +      V ++ R      + SL +
Sbjct: 471 DGVMADLDADAGATLGRKIRRAQLTHYNFQLVVGRREQEHGTVSVRTRDNRQLGEHSLGQ 530

Query: 434 VINYASHRFSNNRP 447
           V+           P
Sbjct: 531 VLQRLRELRDARVP 544


>gi|195125579|ref|XP_002007255.1| GI12837 [Drosophila mojavensis]
 gi|193918864|gb|EDW17731.1| GI12837 [Drosophila mojavensis]
          Length = 460

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 142/469 (30%), Positives = 224/469 (47%), Gaps = 52/469 (11%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+ALD   
Sbjct: 3   KASRLFCPALI-IPKNAVVKQTEQLSVSQKLLTELGLVKSGSNGTYQIMPIAQRALDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++      G  ++S+P L    LW ++GR D    E   + DR+ K  +  PTHEE +
Sbjct: 62  NLVQRNMQEAGGQKISLPVLTPTQLWKKTGRLDGDISEFYMVRDRSGKQFLMSPTHEEAI 121

Query: 115 T-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T  +  +   SYR LP   YQI  KFRDEL+ RFG+MR++EFLMKD Y+FD++ E ++ +
Sbjct: 122 TAMLATTAPISYRQLPLLLYQIGPKFRDELKSRFGLMRAKEFLMKDMYTFDVSKEKAELT 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y  +  +Y R F +L +  + + A +G +GG LSHE+  ++  GE  +            
Sbjct: 182 YATVSEAYERFFRQLEVPFVKVEAATGIMGGSLSHEYHYISPVGEDTLLNCSSC------ 235

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYF 290
                                 YA  ++V  E    + P     +    RG+EV H F  
Sbjct: 236 ---------------------GYAGNAEVFGEDATSTCPNCQSTQLNRVRGVEVAHTFLL 274

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           G KYS P+ AT+    GK   + MG YGIG  R++AA +E       + WP  +AP+ + 
Sbjct: 275 GDKYSKPLGATYLNTSGKPETLVMGCYGIGITRIIAAALEVLSTEHELRWPTLLAPYDVC 334

Query: 351 LINIKAHDQVCRDACEKIYARLSKV-----GCDVFW-DDMGE-QIGSQFAVADLLGFPLQ 403
           LI  K   +      E+I + L +      G +    DD  E  IG +   A  LG PL 
Sbjct: 335 LIGPKQGSKEQVS-GERIESDLLQQLTQVCGAEQLLHDDRKELTIGKRLMEAKRLGHPLT 393

Query: 404 VIVGSKFV--SDSKVEIKHRLTG-IREDMSLEEVINYASHRFSNNRPVL 449
           V+VG+K       K+E+    +G    ++++ EV+   +    + + +L
Sbjct: 394 VVVGAKATQGEAPKLEL--HASGAETVELNITEVLERVASHVRHKQQLL 440


>gi|322709352|gb|EFZ00928.1| threonyl-tRNA synthetase, putative [Metarhizium anisopliae ARSEF
           23]
          Length = 759

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 78/500 (15%), Positives = 158/500 (31%), Gaps = 86/500 (17%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  ++   + +   RD ++      L        S G   +LP G +  + +  ++RE+
Sbjct: 287 MK--EWLTYLEEAKKRDHQLIGKNQKLFW--FSPLSPGSPFFLPHGTRIFNAIQTMLREQ 342

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL------------------------ 96
               G  E+  P +    LW  SG +D Y ++M R+                        
Sbjct: 343 YWMRGYDEVHSPLMYDVQLWKTSGHWDHYQEDMFRVPLKHTHGAAPDAPVASGPDAAKDA 402

Query: 97  --------------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
                             ++     P +      +F S  +SYR+LP+      +  R+E
Sbjct: 403 DKPAGKDGENAEVAKLEQERLFALKPMNCPGHALMFASEERSYRSLPWRVADFSVLHRNE 462

Query: 143 LRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                 G+ R R+F   DA+ F    + +     +    ++   + +      ++  + P
Sbjct: 463 ASGALTGLTRVRKFQQDDAHIFCTIDQVTDE--LRGLFKFMTHVYTMFGFPFKLKLSTRP 520

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATS 260
                                      D           +    + ++     A Y    
Sbjct: 521 -----------------DSYMGKLSDWDAAEDRLKKALQEFKGDDWVINPGDGAFYGPKI 563

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFG----TKYSLPMSATFKG------ADGKDH 310
           DV    + D+L    + +   ++      F     T  S    A  +G        G   
Sbjct: 564 DV---TVNDALGREFQCATIQLDFQLPQNFNLLYRTNESTADRAKGEGEEEGGIPSGMAR 620

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    IG+      +I    +  G  WP  ++P ++ +I I    +   D   ++  
Sbjct: 621 PVMIHRAVIGSFDRFMGIII---EHFGGKWPFWLSPRQVMVIPIMKDAE---DYAREVRD 674

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE--- 427
            L         D  G  +  +   A L  +   ++VG++ +    V I++R     +   
Sbjct: 675 ILHDAKLYADVDVSGNTLQKKIRAAQLAQYNFVMVVGAEEIEKRAVNIRNRDDPSSQQKG 734

Query: 428 -DMSLEEVINYASHRFSNNR 446
             + L+EV+       +  R
Sbjct: 735 AMIDLDEVVKRLVELKAERR 754


>gi|327488783|gb|EGF20582.1| proline--tRNA ligase [Streptococcus sanguinis SK1058]
          Length = 616

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 98/212 (46%), Positives = 138/212 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDAAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y +IF R  L    +  + G +GG  S EF+ 
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMA 212



 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M+A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLKFARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPM 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWGINFPKELAPFDVHLIPVNIKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  +I A L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 EALALTNQIEANLLSAGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   ++  + ++   S
Sbjct: 593 IKATGDTIEVHADNLLETLS 612


>gi|288924947|ref|ZP_06418883.1| threonine--tRNA ligase [Prevotella buccae D17]
 gi|288338137|gb|EFC76487.1| threonine--tRNA ligase [Prevotella buccae D17]
          Length = 673

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 76/425 (17%), Positives = 144/425 (33%), Gaps = 38/425 (8%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L      +  KG+  WLP G +    +  ++R      
Sbjct: 232 EYLVMLEEAKKRDHRKIGKEMELFM-FSERVGKGLPIWLPKGTELRLRLQELLRSMLRPY 290

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P +    L+V SG Y  YGK+  +       D+  +  P +     ++F    
Sbjct: 291 NYQEVITPGIGGKSLYVTSGHYAHYGKDAFQPIHTPEEDEEYMLKPMNCPHHCEVFARKP 350

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +    FR E      G+ R R F   DA+ F   P+  K  +       
Sbjct: 351 RSYKDLPLRIAEFGTVFRYEKSGELHGLTRVRTFTQDDAHIFVR-PDQVKAEFETNIDII 409

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           L++F+  G  +   +                  D  + + +   D +     +   +   
Sbjct: 410 LKVFNIFGFDNYEAQISLR--------------DPNDKEKYIGSDEVWEESETAIKEACA 455

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + VE    A Y    D     + D++    ++    ++      F          
Sbjct: 456 EKGLKARVELGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLPNRF--------KL 504

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            +   D        +     G++    AV+     G   +W           + I    +
Sbjct: 505 EYTAEDNSKKTPVMIHRAPFGSLERFTAVLIEHTAGHFPLW------LTPDQVAILPISE 558

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D  + +      VG     D+  E+IG +    +L   P  VIVG K  ++  V ++
Sbjct: 559 KYNDYAKSVARYFDSVGVRAIIDERNEKIGRKIRDNELKRVPYMVIVGEKESAEGLVSMR 618

Query: 420 HRLTG 424
            +  G
Sbjct: 619 KQGGG 623


>gi|56808720|ref|ZP_00366440.1| COG0442: Prolyl-tRNA synthetase [Streptococcus pyogenes M49 591]
 gi|94995163|ref|YP_603261.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
 gi|209560100|ref|YP_002286572.1| prolyl-tRNA synthetase [Streptococcus pyogenes NZ131]
 gi|114152263|sp|Q1J4L9|SYP_STRPF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701346|sp|B5XIL5|SYP_STRPZ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94548671|gb|ABF38717.1| Prolyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
 gi|209541301|gb|ACI61877.1| Prolyl-tRNA synthetase [Streptococcus pyogenes NZ131]
          Length = 618

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 159/307 (51%), Gaps = 19/307 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGETQVFCSKDFMDFPIPS 234
           Y  IF R GL    +  + G +GG  S EF+ +       D             D P   
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSIASMDDIPKEV 240

Query: 235 ENTDFDDIISLNSIVEQWTAP-----YAATSDVHN--------EKLFDSLPENKRVSARG 281
                 ++ +     E   A      YAA  ++              D+L E +    + 
Sbjct: 241 LEEIKAELAAWMISGEDTIAYSTESSYAANLEMATNEYKPSSKVAAEDALAEVETPHCKT 300

Query: 282 IEVGHIF 288
           I+    F
Sbjct: 301 IDEVAAF 307



 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 73/199 (36%), Positives = 104/199 (52%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+   V    RGIEVGHIF  GT+YS  M AT    +G+   +
Sbjct: 414 FQAEYVDIREVKEGEMSPDGHGVLQFARGIEVGHIFKLGTRYSDSMGATILDENGRTVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V +D   K+ A L   G DV  DD  E++GS+F+ +DL+G P++V VG K  ++  VEIK
Sbjct: 534 VAQDLTAKLEADLMAKGYDVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEIK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   +++ E +I   
Sbjct: 593 IKATGDSIEVNAENLIETL 611


>gi|328754594|gb|EGF68210.1| threonyl-tRNA synthetase [Propionibacterium acnes HL025PA2]
          Length = 689

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 66/448 (14%), Positives = 129/448 (28%), Gaps = 45/448 (10%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   ++E  R D      +L L +    +   G+  + P G      +   +       G
Sbjct: 250 YQQRIKEAERRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGAMLRHLIEEHVIARHMEAG 308

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R  +       +  +
Sbjct: 309 FNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYLKAMNCPM 368

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +    
Sbjct: 369 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTYCTREQAPGE 428

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    +L I    GL    +   +         +FI   +                 
Sbjct: 429 -IKKQIEFFLSILADFGLNDFYLELSTRESDSAKKEKFIGSDED-----------WQVAT 476

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            + +                 A Y       + ++ D++    ++S    +         
Sbjct: 477 DTLDQVCRSTGLQLVPDPGGAAFYGPKV---SVQVRDAIGRTWQMSTIQYDFNQP----- 528

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG       + S  +G++     V+   + G   +W           
Sbjct: 529 ---ERFDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW------LSPVQ 579

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +   D        L   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 580 VRLVPVAEAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFILIAGGEDA 639

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
               V  + R       + L+E +   +
Sbjct: 640 EAGAVSFRLRDGSQVNGVVLDEAVRIIA 667


>gi|315098581|gb|EFT70557.1| threonyl-tRNA synthetase [Propionibacterium acnes HL059PA2]
          Length = 689

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 66/448 (14%), Positives = 129/448 (28%), Gaps = 45/448 (10%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   ++E  R D      +L L +    +   G+  + P G      +   +       G
Sbjct: 250 YQQRIKEAERRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGAMLRHLIEEHVIARHMEAG 308

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R  +       +  +
Sbjct: 309 FNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYLKAMNCPM 368

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +    
Sbjct: 369 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTYCTREQAPGE 428

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    +L I    GL    +   +         +FI   +                 
Sbjct: 429 -IKKQIEFFLSILADFGLNDFYLELSTRESDSAKKEKFIGSDED-----------WQVAT 476

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            + +                 A Y       + ++ D++    ++S    +         
Sbjct: 477 DTLDQVCRSTGLQLVPDPGGAAFYGPKV---SVQVRDAIGRTWQMSTIQYDFNQP----- 528

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG       + S  +G++     V+   + G   +W           
Sbjct: 529 ---ERFDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW------LSPVQ 579

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +   D        L   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 580 VRLVPVAEAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFILIAGGEDA 639

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
               V  + R       + L+E +   +
Sbjct: 640 EAGAVSFRLRDGSQVNGVVLDEAVRIIA 667


>gi|94991250|ref|YP_599350.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
 gi|114152262|sp|Q1JEV3|SYP_STRPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94544758|gb|ABF34806.1| Prolyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
          Length = 618

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 159/307 (51%), Gaps = 19/307 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y  IF R GL    +  + G +GG  S EF+       D     V          IP E 
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSIASMDAIPKEV 240

Query: 237 TDFDDIISLNSIVEQWT-------APYAATSDVHN--------EKLFDSLPENKRVSARG 281
            +         ++           + YAA  ++              D+L E +    + 
Sbjct: 241 LEEIKAELAAWMISGEDTIAYSTESSYAANLEMATNEYKPSSKVAAEDALAEVETPHCKT 300

Query: 282 IEVGHIF 288
           I+    F
Sbjct: 301 IDEVAAF 307



 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/199 (36%), Positives = 103/199 (51%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+   V    RGIEVGHIF  GT+YS  M AT    + +   +
Sbjct: 414 FQAEYVDIREVKEGEISPDGHGVLQFARGIEVGHIFKLGTRYSDSMGATILDENSRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V +D   K+ A L   G DV  DD  E++GS+F+ +DL+G P++V VG K  ++  VEIK
Sbjct: 534 VAQDLTAKLEADLMAKGYDVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEIK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   +++ E +I   
Sbjct: 593 IKATGDSIEVNAENLIETL 611


>gi|314967879|gb|EFT11978.1| threonyl-tRNA synthetase [Propionibacterium acnes HL037PA1]
          Length = 689

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 66/448 (14%), Positives = 129/448 (28%), Gaps = 45/448 (10%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   ++E  R D      +L L +    +   G+  + P G      +   +       G
Sbjct: 250 YQQRIKEAERRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGAMLRHLIEEHVIARHMEAG 308

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R  +       +  +
Sbjct: 309 FNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYLKAMNCPM 368

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +    
Sbjct: 369 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTYCTREQAPGE 428

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    +L I    GL    +   +         +FI   +                 
Sbjct: 429 -IKKQIEFFLSILADFGLNDFYLELSTRESDSAKKEKFIGSDED-----------WQVAT 476

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            + +                 A Y       + ++ D++    ++S    +         
Sbjct: 477 DTLDQVCRSTGLQLVPDPGGAAFYGPKV---SVQVRDAIGRTWQMSTIQYDFNQP----- 528

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG       + S  +G++     V+   + G   +W           
Sbjct: 529 ---ERFDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW------LSPVQ 579

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +   D        L   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 580 VRLVPVAEAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFILIAGGEDA 639

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
               V  + R       + L+E +   +
Sbjct: 640 EAGAVSFRLRDGSQVNGVVLDEAVRIIA 667


>gi|314981048|gb|EFT25142.1| threonyl-tRNA synthetase [Propionibacterium acnes HL110PA3]
 gi|315091876|gb|EFT63852.1| threonyl-tRNA synthetase [Propionibacterium acnes HL110PA4]
          Length = 689

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 66/448 (14%), Positives = 129/448 (28%), Gaps = 45/448 (10%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   ++E  R D      +L L +    +   G+  + P G      +   +       G
Sbjct: 250 YQQRIKEAERRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGAMLRHLIEEHVIARHMEAG 308

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R  +       +  +
Sbjct: 309 FNFVHTPEITKGGLFHTSGHLPYYAGTMFPPMLVDEERDEEGNVTRAGQEYYLKAMNCPM 368

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +    
Sbjct: 369 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTYCTREQAPGE 428

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    +L I    GL    +   +         +FI   +                 
Sbjct: 429 -IKKQIEFFLSILADFGLNDFYLELSTRESDSAKEEKFIGSDED-----------WQVAT 476

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            + +                 A Y       + ++ D++    ++S    +         
Sbjct: 477 DTLDQVCRSTGLQLVPDPGGAAFYGPKV---SVQVRDAIGRTWQMSTIQYDFNQP----- 528

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG       + S  +G++     V+   + G   +W           
Sbjct: 529 ---ERFDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW------LSPVQ 579

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +   D        L   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 580 VRLVPVAEAFNDYVTGFAEVLGSHGIRVETDLSSDRFGKKIRNASKDKVPFILIAGGEDA 639

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
               V  + R       + L+E +   +
Sbjct: 640 EAGAVSFRLRDGSQINGVVLDEAVRIIT 667


>gi|282853974|ref|ZP_06263311.1| threonine--tRNA ligase [Propionibacterium acnes J139]
 gi|282583427|gb|EFB88807.1| threonine--tRNA ligase [Propionibacterium acnes J139]
          Length = 684

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 66/448 (14%), Positives = 129/448 (28%), Gaps = 45/448 (10%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   ++E  R D      +L L +    +   G+  + P G      +   +       G
Sbjct: 245 YQQRIKEAERRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGAMLRHLIEEHVIARHMEAG 303

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R  +       +  +
Sbjct: 304 FNFVHTPEITKGGLFHTSGHLPYYAGTMFPPMLVDEERDEEGNVTRAGQEYYLKAMNCPM 363

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +    
Sbjct: 364 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTYCTREQAPGE 423

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    +L I    GL    +   +         +FI   +                 
Sbjct: 424 -IKKQIEFFLSILADFGLNDFYLELSTRESDSAKEEKFIGSDED-----------WQVAT 471

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            + +                 A Y       + ++ D++    ++S    +         
Sbjct: 472 DTLDQVCRSTGLQLVPDPGGAAFYGPKV---SVQVRDAIGRTWQMSTIQYDFNQP----- 523

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG       + S  +G++     V+   + G   +W           
Sbjct: 524 ---ERFDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW------LSPVQ 574

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +   D        L   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 575 VRLVPVAEAFNDYVTGFAEVLGSHGIRVETDLSSDRFGKKIRNASKDKVPFILIAGGEDA 634

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
               V  + R       + L+E +   +
Sbjct: 635 EAGAVSFRLRDGSQINGVVLDEAVRIIT 662


>gi|327331893|gb|EGE73630.1| threonine--tRNA ligase [Propionibacterium acnes HL096PA3]
          Length = 689

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 66/448 (14%), Positives = 129/448 (28%), Gaps = 45/448 (10%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   ++E  R D      +L L +    +   G+  + P G      +   +       G
Sbjct: 250 YQQRIKEAERRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGAMLRHLIEEHVIARHMEAG 308

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R  +       +  +
Sbjct: 309 FNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYLKAMNCPM 368

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +    
Sbjct: 369 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTYCTREQAPGE 428

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    +L I    GL    +   +         +FI   +                 
Sbjct: 429 -IKKQIEFFLSILADFGLNDFYLELSTRESDSAKKEKFIGSDED-----------WQVAT 476

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            + +                 A Y       + ++ D++    ++S    +         
Sbjct: 477 DTLDQVCRSTGLQLVPDPGGAAFYGPKV---SVQVRDAIGRTWQMSTIQYDFNQP----- 528

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG       + S  +G++     V+   + G   +W           
Sbjct: 529 ---ERFDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW------LSPVQ 579

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +   D        L   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 580 VRLVPVAEAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFILIAGGEDA 639

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
               V  + R       + L+E +   +
Sbjct: 640 EAGAVSFRLRDGSQVNGVVLDEAVRIIA 667


>gi|317008889|gb|ADU79469.1| prolyl-tRNA synthetase [Helicobacter pylori India7]
          Length = 577

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDEEFLNTQNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDHCPNCQGALEYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++ ++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSTILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +I+G + +   + E   R    ++ +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIIGKQTLESREFECIKRANLEKQTLKDIELEEK 569

Query: 438 ASHRFSN 444
                ++
Sbjct: 570 ILEMLAS 576


>gi|157150969|ref|YP_001451117.1| prolyl-tRNA synthetase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|189083519|sp|A8AZA7|SYP_STRGC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157075763|gb|ABV10446.1| prolyl-tRNA synthetase [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 616

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 110/394 (27%), Positives = 183/394 (46%), Gaps = 19/394 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L+LR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRY++YG ++ +L +R     I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYETYGDDLFKLKNREGSDFILGPTHEETFTALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVTYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV----LADTGETQVFCSKDFMDFPIPSEN 236
           Y +IF R  +    +  + G +GG  S EF+       D     V          IP++ 
Sbjct: 181 YEKIFTRSEIDFKAIIGDGGAMGGKDSQEFMAITPDRTDLDRWLVLDKSVASLDEIPADV 240

Query: 237 TDFDDIISLNSIVEQWT-------APYAATSDVHNEKLFDS--------LPENKRVSARG 281
            +       N +V           + YAA  ++   +   S        L   +  + + 
Sbjct: 241 LEAIKAELSNWMVSGEDTIAYSSESSYAANLEMATNEYKPSNRVVAETELVRVETPNCKT 300

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           I+    F   ++     +  +   +     + +G+  +  +++   +     +       
Sbjct: 301 IDEVAAFLQVSEEQTIKTLVYIADEKPVVALLVGNDQLNEVKLKNHLGADFFEAATEAEV 360

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
             +       +      +      ++    LS  
Sbjct: 361 QELFGANFGSLGPVNLPEEVTIIADRKVQDLSNA 394



 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+   V    RGIE+GHIF  GT+YS  M+AT    +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGNGVLKFARGIEIGHIFKLGTRYSDSMNATVLDENGRAVPL 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 VMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +KI   L   G +V  DD  E++G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 ESLALTDKIEESLVGAGYEVLVDDRNERVGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + +G   ++  + +I   S
Sbjct: 593 IKASGDTIEVHADNLIETLS 612


>gi|325688976|gb|EGD30984.1| proline--tRNA ligase [Streptococcus sanguinis SK115]
          Length = 616

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 101/242 (41%), Positives = 148/242 (61%), Gaps = 2/242 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDAAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +IF R  L    +  + G +GG  S EF+ +    +         +D  + S +   +
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITP--DRTDLNRWMVLDKSVASFDEIPE 238

Query: 241 DI 242
           D+
Sbjct: 239 DV 240



 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M+A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLKFARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPM 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I A L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 EALTLTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   ++  + ++   S
Sbjct: 593 IKATGDTIEVHADNLLETLS 612


>gi|50842554|ref|YP_055781.1| threonyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289426579|ref|ZP_06428319.1| threonine--tRNA ligase [Propionibacterium acnes J165]
 gi|295130636|ref|YP_003581299.1| threonine--tRNA ligase [Propionibacterium acnes SK137]
 gi|73919815|sp|Q6A8U3|SYT_PROAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|50840156|gb|AAT82823.1| threonyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289160223|gb|EFD08387.1| threonine--tRNA ligase [Propionibacterium acnes J165]
 gi|291376551|gb|ADE00406.1| threonine--tRNA ligase [Propionibacterium acnes SK137]
 gi|332675479|gb|AEE72295.1| threonine--tRNA ligase [Propionibacterium acnes 266]
          Length = 684

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 66/448 (14%), Positives = 129/448 (28%), Gaps = 45/448 (10%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   ++E  R D      +L L +    +   G+  + P G      +   +       G
Sbjct: 245 YQQRIKEAERRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGAMLRHLIEEHVIARHMEAG 303

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R  +       +  +
Sbjct: 304 FNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYLKAMNCPM 363

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +    
Sbjct: 364 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTYCTREQAPGE 423

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    +L I    GL    +   +         +FI   +                 
Sbjct: 424 -IKKQIEFFLSILADFGLNDFYLELSTRESDSAKKEKFIGSDED-----------WQVAT 471

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            + +                 A Y       + ++ D++    ++S    +         
Sbjct: 472 DTLDQVCRSTGLQLVPDPGGAAFYGPKV---SVQVRDAIGRTWQMSTIQYDFNQP----- 523

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG       + S  +G++     V+   + G   +W           
Sbjct: 524 ---ERFDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW------LSPVQ 574

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +   D        L   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 575 VRLVPVAEAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFILIAGGEDA 634

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
               V  + R       + L+E +   +
Sbjct: 635 EAGAVSFRLRDGSQVNGVVLDEAVRIIA 662


>gi|313764410|gb|EFS35774.1| threonyl-tRNA synthetase [Propionibacterium acnes HL013PA1]
 gi|313772208|gb|EFS38174.1| threonyl-tRNA synthetase [Propionibacterium acnes HL074PA1]
 gi|313807564|gb|EFS46051.1| threonyl-tRNA synthetase [Propionibacterium acnes HL087PA2]
 gi|313810073|gb|EFS47794.1| threonyl-tRNA synthetase [Propionibacterium acnes HL083PA1]
 gi|313815947|gb|EFS53661.1| threonyl-tRNA synthetase [Propionibacterium acnes HL059PA1]
 gi|313818605|gb|EFS56319.1| threonyl-tRNA synthetase [Propionibacterium acnes HL046PA2]
 gi|313820374|gb|EFS58088.1| threonyl-tRNA synthetase [Propionibacterium acnes HL036PA1]
 gi|313822822|gb|EFS60536.1| threonyl-tRNA synthetase [Propionibacterium acnes HL036PA2]
 gi|313825247|gb|EFS62961.1| threonyl-tRNA synthetase [Propionibacterium acnes HL063PA1]
 gi|313827535|gb|EFS65249.1| threonyl-tRNA synthetase [Propionibacterium acnes HL063PA2]
 gi|313830403|gb|EFS68117.1| threonyl-tRNA synthetase [Propionibacterium acnes HL007PA1]
 gi|313833773|gb|EFS71487.1| threonyl-tRNA synthetase [Propionibacterium acnes HL056PA1]
 gi|314915402|gb|EFS79233.1| threonyl-tRNA synthetase [Propionibacterium acnes HL005PA4]
 gi|314918317|gb|EFS82148.1| threonyl-tRNA synthetase [Propionibacterium acnes HL050PA1]
 gi|314920127|gb|EFS83958.1| threonyl-tRNA synthetase [Propionibacterium acnes HL050PA3]
 gi|314925261|gb|EFS89092.1| threonyl-tRNA synthetase [Propionibacterium acnes HL036PA3]
 gi|314931649|gb|EFS95480.1| threonyl-tRNA synthetase [Propionibacterium acnes HL067PA1]
 gi|314955705|gb|EFT00107.1| threonyl-tRNA synthetase [Propionibacterium acnes HL027PA1]
 gi|314958104|gb|EFT02207.1| threonyl-tRNA synthetase [Propionibacterium acnes HL002PA1]
 gi|314959956|gb|EFT04058.1| threonyl-tRNA synthetase [Propionibacterium acnes HL002PA2]
 gi|314973405|gb|EFT17501.1| threonyl-tRNA synthetase [Propionibacterium acnes HL053PA1]
 gi|314976084|gb|EFT20179.1| threonyl-tRNA synthetase [Propionibacterium acnes HL045PA1]
 gi|314978527|gb|EFT22621.1| threonyl-tRNA synthetase [Propionibacterium acnes HL072PA2]
 gi|314983896|gb|EFT27988.1| threonyl-tRNA synthetase [Propionibacterium acnes HL005PA1]
 gi|314988078|gb|EFT32169.1| threonyl-tRNA synthetase [Propionibacterium acnes HL005PA2]
 gi|314989885|gb|EFT33976.1| threonyl-tRNA synthetase [Propionibacterium acnes HL005PA3]
 gi|315085609|gb|EFT57585.1| threonyl-tRNA synthetase [Propionibacterium acnes HL002PA3]
 gi|315088339|gb|EFT60315.1| threonyl-tRNA synthetase [Propionibacterium acnes HL072PA1]
 gi|315095950|gb|EFT67926.1| threonyl-tRNA synthetase [Propionibacterium acnes HL038PA1]
 gi|315101418|gb|EFT73394.1| threonyl-tRNA synthetase [Propionibacterium acnes HL046PA1]
 gi|315105605|gb|EFT77581.1| threonyl-tRNA synthetase [Propionibacterium acnes HL030PA1]
 gi|315108634|gb|EFT80610.1| threonyl-tRNA synthetase [Propionibacterium acnes HL030PA2]
 gi|327326232|gb|EGE68022.1| threonine--tRNA ligase [Propionibacterium acnes HL096PA2]
 gi|327443095|gb|EGE89749.1| threonyl-tRNA synthetase [Propionibacterium acnes HL013PA2]
 gi|327445877|gb|EGE92531.1| threonyl-tRNA synthetase [Propionibacterium acnes HL043PA2]
 gi|327448141|gb|EGE94795.1| threonyl-tRNA synthetase [Propionibacterium acnes HL043PA1]
 gi|327450737|gb|EGE97391.1| threonyl-tRNA synthetase [Propionibacterium acnes HL087PA3]
 gi|327453921|gb|EGF00576.1| threonyl-tRNA synthetase [Propionibacterium acnes HL083PA2]
 gi|328753425|gb|EGF67041.1| threonyl-tRNA synthetase [Propionibacterium acnes HL020PA1]
 gi|328754156|gb|EGF67772.1| threonyl-tRNA synthetase [Propionibacterium acnes HL087PA1]
 gi|328760808|gb|EGF74374.1| threonine--tRNA ligase [Propionibacterium acnes HL099PA1]
          Length = 689

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 66/448 (14%), Positives = 129/448 (28%), Gaps = 45/448 (10%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   ++E  R D      +L L +    +   G+  + P G      +   +       G
Sbjct: 250 YQQRIKEAERRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGAMLRHLIEEHVIARHMEAG 308

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R  +       +  +
Sbjct: 309 FNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYLKAMNCPM 368

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +    
Sbjct: 369 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTYCTREQAPGE 428

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    +L I    GL    +   +         +FI   +                 
Sbjct: 429 -IKKQIEFFLSILADFGLNDFYLELSTRESDSAKKEKFIGSDED-----------WQVAT 476

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            + +                 A Y       + ++ D++    ++S    +         
Sbjct: 477 DTLDQVCRSTGLQLVPDPGGAAFYGPKV---SVQVRDAIGRTWQMSTIQYDFNQP----- 528

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG       + S  +G++     V+   + G   +W           
Sbjct: 529 ---ERFDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW------LSPVQ 579

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +   D        L   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 580 VRLVPVAEAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFILIAGGEDA 639

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
               V  + R       + L+E +   +
Sbjct: 640 EAGAVSFRLRDGSQVNGVVLDEAVRIIA 667


>gi|50915027|ref|YP_060999.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|139474448|ref|YP_001129164.1| prolyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|81822684|sp|Q5X9U7|SYP_STRP6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152112957|sp|A2RGI4|SYP_STRPG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|50904101|gb|AAT87816.1| Prolyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|134272695|emb|CAM30966.1| prolyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
          Length = 618

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 159/307 (51%), Gaps = 19/307 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGETQVFCSKDFMDFPIPS 234
           Y  IF R GL    +  + G +GG  S EF+ +       D             D P   
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSIASMDDIPKEV 240

Query: 235 ENTDFDDIISLNSIVEQWTAP-----YAATSDVHN--------EKLFDSLPENKRVSARG 281
                 ++ +     E   A      YAA  ++              D+L E +    + 
Sbjct: 241 LEEIKAELAAWMISGEDTIAYSTESSYAANLEMATNEYKPSSKVAAEDALAEVETPHCKT 300

Query: 282 IEVGHIF 288
           I+    F
Sbjct: 301 IDEVAAF 307



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/199 (35%), Positives = 102/199 (51%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+   V    RGIEVGHIF  GT+YS  M A     +G+   +
Sbjct: 414 FQAEYVDIREVKEGEMSPDGHGVLQFARGIEVGHIFKLGTRYSDSMGAKILDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D   K+ A L   G DV  DD  E++GS+F+ +DL+G P++V VG K  ++  VEIK
Sbjct: 534 AAQDLTAKLEADLMAKGYDVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEIK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   +++ E +I   
Sbjct: 593 IKATGDSIEVNAENLIETL 611


>gi|332359971|gb|EGJ37785.1| proline--tRNA ligase [Streptococcus sanguinis SK1056]
          Length = 616

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 98/212 (46%), Positives = 138/212 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDAAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y +IF R  L    +  + G +GG  S EF+ 
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMA 212



 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ +     ARGIE+GHIF  GT+YS  M+A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGILKFARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPL 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I A L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 EALTLTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   ++  + ++   S
Sbjct: 593 IKATGDTIEVHADNLLETLS 612


>gi|317012082|gb|ADU82690.1| prolyl-tRNA synthetase [Helicobacter pylori Lithuania75]
          Length = 577

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 2/173 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D   +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDGAQKKLAFEVYERLLQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           D   DD   + G++    +L+G  L +I+G + + + + E   R    ++ + 
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIIGKQTLENKEFECIKRANLEKQTLK 562


>gi|323126466|gb|ADX23763.1| prolyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 618

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 158/307 (51%), Gaps = 19/307 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG ++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGDDLYKLKNRDKSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHPNYDDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGETQVFCSKDFMDFPIPS 234
           Y  IF R GL    +  + G +GG  S EF+ +       D             D P   
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITPERTDLDRWVVLDKSIPSLADIPEEV 240

Query: 235 ENTDFDDIISLNSIVEQWTAP-----YAATSDVHN--------EKLFDSLPENKRVSARG 281
                 ++ +     E   A      YAA  ++              D+L E +  + + 
Sbjct: 241 LEEIKAELTAWMISGEDTIAYSSESSYAANLEMATNEYKPSSKVAAEDALTEVETPNCKT 300

Query: 282 IEVGHIF 288
           I+    F
Sbjct: 301 IDEVADF 307



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/199 (35%), Positives = 102/199 (51%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+   +    RGIEVGHIF  GT+YS  M AT    +G+   +
Sbjct: 414 FQAEYVDIREVKEGEMSPDGHGILQFARGIEVGHIFKLGTRYSDSMGATILDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D    + A L   G DV  DD  E++GS+F+ +DL+G P++V VG K  +D  VEIK
Sbjct: 534 AAQDLTATLEADLMANGYDVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-AADGIVEIK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   +++ + +I   
Sbjct: 593 IKATGDSIEVTADNLIETL 611


>gi|322411037|gb|EFY01945.1| prolyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 618

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 158/307 (51%), Gaps = 19/307 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG ++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGDDLYKLKNRDKSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHPNYDDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGETQVFCSKDFMDFPIPS 234
           Y  IF R GL    +  + G +GG  S EF+ +       D             D P   
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITPERTDLDRWVVLDKSIPSLADIPEEV 240

Query: 235 ENTDFDDIISLNSIVEQWTAP-----YAATSDVHN--------EKLFDSLPENKRVSARG 281
                 ++ +     E   A      YAA  ++              D+L E +  + + 
Sbjct: 241 LEEIKAELTAWMISGEDTIAYSSESSYAANLEMATNEYKPSSKVAAEDALTEVETPNCKT 300

Query: 282 IEVGHIF 288
           I+    F
Sbjct: 301 IDEVADF 307



 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/199 (35%), Positives = 102/199 (51%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+   V    RGIEVGHIF  GT+YS  M AT    +G+   +
Sbjct: 414 FQAEYVDIREVKEGEMSPDGHGVLQFARGIEVGHIFKLGTRYSDSMGATILDDNGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D    + A L   G DV  DD  E++GS+F+ +DL+G P++V VG K  +D  VEIK
Sbjct: 534 AAQDLTATLEADLMAKGYDVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-AADGIVEIK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   +++ + +I   
Sbjct: 593 IKATGDSVEVTADNLIETL 611


>gi|302783999|ref|XP_002973772.1| hypothetical protein SELMODRAFT_442211 [Selaginella moellendorffii]
 gi|300158810|gb|EFJ25432.1| hypothetical protein SELMODRAFT_442211 [Selaginella moellendorffii]
          Length = 795

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 68/432 (15%), Positives = 134/432 (31%), Gaps = 72/432 (16%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +    +E  R D       L L +  I +    G+  W P G      +    ++   
Sbjct: 246 KAYQTQKEEAKRRDHRRLGQDLELFS--IQEDAGGGLVFWHPKGALIRHLIEDYWKKVHL 303

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           R G   +  P +  A+LW  SG  D Y + M       ++     P +      I++  +
Sbjct: 304 RRGYELLYTPHVAKAELWKTSGHLDFYKENMFEQIKIEEEFYQLRPMNCPFHIQIYKDRV 363

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR LP                    ++  E          +     +      F +Y 
Sbjct: 364 RSYRELP--------------------IKFAELEQIRGEIKSVLDLTEEILSQFGFQNYE 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                                        +   T   +   S D       +      D 
Sbjct: 404 -----------------------------INLSTKPEKAVGSDDIWHKATEALKDAISDK 434

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A Y    D+   K+ D++    + S   ++    F    ++      T+
Sbjct: 435 GWTYGIDEGGGAFYGPKIDL---KIEDAIGRTWQCSTIQVD----FNLPERFD----LTY 483

Query: 303 KGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                 +   + +     G++     ++    +     +P  +AP +  L+ +   +   
Sbjct: 484 VDPSQARKQPIMIHRAIFGSIERFVGILI---ESYAGDFPLWIAPVQARLLPVTDTE--- 537

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
              C+++ ARL +          GE++      A++   PL  +VG K V    + ++ R
Sbjct: 538 LPYCKQVLARLREKDIRAEI-ACGERLSKLIRNAEVQKIPLMAVVGPKEVEAQTLTVRTR 596

Query: 422 LTGIREDMSLEE 433
             G    +S++E
Sbjct: 597 HGGELGTLSVDE 608


>gi|199597103|ref|ZP_03210535.1| prolyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|258508613|ref|YP_003171364.1| prolyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|199591907|gb|EDY99981.1| prolyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|257148540|emb|CAR87513.1| Prolyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|259649920|dbj|BAI42082.1| prolyl-tRNA synthetase [Lactobacillus rhamnosus GG]
          Length = 576

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 103/235 (43%), Positives = 148/235 (62%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E
Sbjct: 1   MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQVQAGVYAYLPLAERVLSRIEAIIDDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+
Sbjct: 61  MTKIDAVKMKMPALLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +
Sbjct: 121 ELKSYKRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLDTIYRQMEHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  IF RLGL+   +  + G +GG  S EF  +A  GE  +  S    D+    E
Sbjct: 181 YTNIFDRLGLRYRTIIGDGGAMGGKDSKEFSAIASIGEDTIVYSDS-SDYAANLE 234



 Score =  156 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 70/182 (38%), Positives = 101/182 (55%), Gaps = 3/182 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  +  P+ + V    RGIE+GHIF  GT+YS  M A F   +G+   + MGSY
Sbjct: 382 ADIRFVKEGEVSPDGQGVLKFTRGIEIGHIFKLGTRYSETMGADFLDENGRSQPIIMGSY 441

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A+ E   D  G+IWP ++APF I LI +    +  +     I   L   G 
Sbjct: 442 GIGVSRLLSAIAEQQADDHGLIWPTTIAPFDIHLIPVNLKREEQKTLTASIGTMLEDAGY 501

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  DD  E+ G +FA +DL+G PL+V VG K V +  VE+K R TG   ++  EE+I+ 
Sbjct: 502 SVLVDDRNERPGVKFADSDLIGIPLRVTVGKKAVDE-IVELKLRKTGETIEVKKEELISS 560

Query: 438 AS 439
             
Sbjct: 561 IK 562


>gi|331001642|ref|ZP_08325165.1| threonyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330413363|gb|EGG92730.1| threonyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 651

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 148/444 (33%), Gaps = 37/444 (8%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE-EQNRTG 65
           L  L++   RD      ++ L T  +    +G+   LP G K +  +   I + E N  G
Sbjct: 230 LKHLEDIKLRDHNKLGREMELFTT-VDVIGQGLPLMLPKGTKMIQKLQRWIEDLEDNEWG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD--RNDKAMIYGPTHEEVMTDIFRSHIK 123
            +    P +  +DL+  SG +D Y   M  L D   + + +   P        ++++  K
Sbjct: 289 YVRTKTPLMAKSDLYKISGHWDHYQDGMFILGDPQNDGEILALRPMTCPFQYYVYKNTQK 348

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP+   +    FR+E      G+ R R+F + + ++     +  +   N + ++  
Sbjct: 349 SYRDLPYRMGETSTLFRNEDSGEMHGLTRVRQFTISEGHNVIRPDQAEEELQNCLNLAI- 407

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                          +   +  D++          + +      + +    +      + 
Sbjct: 408 ------------YVLDILGLRDDVTFRLSKWDKNNKGKYLGDDAYWEGTQAALRNILVEK 455

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
               +  +   A Y    D+  + ++      K  +   I            +      +
Sbjct: 456 GLPFTEADGEAAFYGPKIDIQAKNVY-----GKEDTMITI------QLDAAIAENFDLYY 504

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               G       +    +G      A +   + GK   W  +     + ++ I       
Sbjct: 505 IDQSGAKVRPYIVHRTSLGCYERTLAWLIEKYAGKFPTWLCAEQ---VRILPISDK---Y 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +    +   L K G D   D   E+IG +   A L   P  ++VG K  ++  V ++ R
Sbjct: 559 AEYANIVLKELKKNGVDATVDTRTEKIGFKIRDARLSRLPYMLVVGEKEEAEGSVSVRSR 618

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
             G      L + ++         
Sbjct: 619 FAGDEGSKKLSDFVDMICKEIRTK 642


>gi|317010519|gb|ADU84266.1| prolyl-tRNA synthetase [Helicobacter pylori SouthAfrica7]
          Length = 577

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 137/235 (58%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQIGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDEEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I + LGL    + A+SG IGG+ S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILNDLGLDFRIVEADSGAIGGNKSKEFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIIQVKESDCCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLLQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD   + G++    +L+G  L +IVG + +   + E   R    ++ +   E+   
Sbjct: 510 DVLLDDRDARFGAKMRDFELIGERLALIVGKQTLESREFECIKRANLEKQTLKDTELEEK 569

Query: 438 ASHRFSN 444
                 +
Sbjct: 570 ILEILES 576


>gi|309799607|ref|ZP_07693832.1| prolyl-tRNA synthetase [Streptococcus infantis SK1302]
 gi|308116758|gb|EFO54209.1| prolyl-tRNA synthetase [Streptococcus infantis SK1302]
          Length = 617

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 104/257 (40%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKMGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP + 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSVASFDEIPDQV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  +V    
Sbjct: 241 QEEIKAELLKWMVSGED 257



 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 101/207 (48%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ K V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGKGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  +I   L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 ASLTLTNRIEEALVNKGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++ ++ ++         N+
Sbjct: 593 IKATGDTIEVHVDSLLETL--EILTNK 617


>gi|289425232|ref|ZP_06427009.1| threonine--tRNA ligase [Propionibacterium acnes SK187]
 gi|289154210|gb|EFD02898.1| threonine--tRNA ligase [Propionibacterium acnes SK187]
          Length = 684

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 66/447 (14%), Positives = 132/447 (29%), Gaps = 43/447 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   ++E  R D      +L L +    +   G+  + P G      +   +       G
Sbjct: 245 YQQRIKEAERRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGAMLRHLIEEHVIARHMEAG 303

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R  +       +  +
Sbjct: 304 FNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYLKAMNCPM 363

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +    
Sbjct: 364 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTYCTREQAPGE 423

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    +L I    GL    +   +         +FI   +                 
Sbjct: 424 -IKKQIEFFLSILADFGLNDFYLELSTRESDSAKKEKFIGSDED-----------WQVAT 471

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            + +                 A Y       + ++ D++    ++S    +    F    
Sbjct: 472 DTLDQVCRSTGLQLVPDPGGAAFYGPKV---SVQVRDAIGRTWQMSTIQYD----FNQPE 524

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           ++ L  +A           + + S  +G++     V+   + G   +W           +
Sbjct: 525 RFDLEYAAA---DSTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW------LSPVQV 575

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +    +   D        L   G  V  D   ++ G +   A     P  +I G +   
Sbjct: 576 RLVPVAEAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFILIAGGEDAE 635

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYAS 439
              V  + R       + L+E +   +
Sbjct: 636 AGAVSFRLRDGSQVNGVVLDEAVRIIA 662


>gi|313792096|gb|EFS40197.1| threonyl-tRNA synthetase [Propionibacterium acnes HL110PA1]
 gi|313801952|gb|EFS43186.1| threonyl-tRNA synthetase [Propionibacterium acnes HL110PA2]
 gi|313812897|gb|EFS50611.1| threonyl-tRNA synthetase [Propionibacterium acnes HL025PA1]
 gi|313838778|gb|EFS76492.1| threonyl-tRNA synthetase [Propionibacterium acnes HL086PA1]
 gi|314962753|gb|EFT06853.1| threonyl-tRNA synthetase [Propionibacterium acnes HL082PA1]
 gi|315077970|gb|EFT50021.1| threonyl-tRNA synthetase [Propionibacterium acnes HL053PA2]
 gi|327453186|gb|EGE99840.1| threonyl-tRNA synthetase [Propionibacterium acnes HL092PA1]
          Length = 689

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 66/447 (14%), Positives = 132/447 (29%), Gaps = 43/447 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   ++E  R D      +L L +    +   G+  + P G      +   +       G
Sbjct: 250 YQQRIKEAERRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGAMLRHLIEEHVIARHMEAG 308

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R  +       +  +
Sbjct: 309 FNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYLKAMNCPM 368

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +    
Sbjct: 369 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTYCTREQAPGE 428

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    +L I    GL    +   +         +FI   +                 
Sbjct: 429 -IKKQIEFFLSILADFGLNDFYLELSTRESDSAKKEKFIGSDED-----------WQVAT 476

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            + +                 A Y       + ++ D++    ++S    +    F    
Sbjct: 477 DTLDQVCRSTGLQLVPDPGGAAFYGPKV---SVQVRDAIGRTWQMSTIQYD----FNQPE 529

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           ++ L  +A           + + S  +G++     V+   + G   +W           +
Sbjct: 530 RFDLEYAAA---DSTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW------LSPVQV 580

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +    +   D        L   G  V  D   ++ G +   A     P  +I G +   
Sbjct: 581 RLVPVAEAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFILIAGGEDAE 640

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYAS 439
              V  + R       + L+E +   +
Sbjct: 641 AGAVSFRLRDGSQVNGVVLDEAVRIIA 667


>gi|314923371|gb|EFS87202.1| threonyl-tRNA synthetase [Propionibacterium acnes HL001PA1]
 gi|315093365|gb|EFT65341.1| threonyl-tRNA synthetase [Propionibacterium acnes HL060PA1]
 gi|315103379|gb|EFT75355.1| threonyl-tRNA synthetase [Propionibacterium acnes HL050PA2]
 gi|327327544|gb|EGE69320.1| threonine--tRNA ligase [Propionibacterium acnes HL103PA1]
          Length = 689

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 66/448 (14%), Positives = 129/448 (28%), Gaps = 45/448 (10%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   ++E  R D      +L L +    +   G+  + P G      +   +       G
Sbjct: 250 YQQRIKEAERRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGAMLRHLIEEHVIARHMEAG 308

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R  +       +  +
Sbjct: 309 FNFVHTPEITKGGLFHTSGHLPYYAGTMFPPMLVDEERDEEGNVTRAGQEYYLKAMNCPM 368

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +    
Sbjct: 369 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTYCTREQAPGE 428

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    +L I    GL    +   +         +FI   +                 
Sbjct: 429 -IKKQIEFFLSILADFGLNDFYLELSTRESDSAKEEKFIGSDED-----------WQVAT 476

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            + +                 A Y       + ++ D++    ++S    +         
Sbjct: 477 DTLDQVCRSTGLQLVPDPGGAAFYGPKV---SVQVRDAIGRTWQMSTIQYDFNQP----- 528

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG       + S  +G++     V+   + G   +W           
Sbjct: 529 ---ERFDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW------LSPVQ 579

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +   D        L   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 580 VRLVPVAEAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFILIAGGEDA 639

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
               V  + R       + L+E +   +
Sbjct: 640 EAGAVSFRLRDGSQINGVVLDEAVRIIT 667


>gi|327462766|gb|EGF09088.1| proline--tRNA ligase [Streptococcus sanguinis SK1057]
          Length = 616

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 98/212 (46%), Positives = 138/212 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y +IF R  L    +  + G +GG  S EF+ 
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMA 212



 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M+A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLKFARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPM 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I A L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 EALALTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   ++  + ++   S
Sbjct: 593 IKATGDTIEVHADNLLETLS 612


>gi|309775936|ref|ZP_07670928.1| proline--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916218|gb|EFP61966.1| proline--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 564

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 97/244 (39%), Positives = 142/244 (58%), Gaps = 1/244 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  +   L+EN +D +  S  L++R GMI + S GIY  +P+G++ L  +  I+REE
Sbjct: 1   MKLSNSYFYTLRENVKDEDSTSGNLLVRAGMIKKSSSGIYMIMPMGKRVLKKIEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +   +++ +SGR +++G  M  L DR  K  + GPTHEE+ T     
Sbjct: 61  MDAAGAQELLMPAMIPEEIYEKSGRREAFGSNMFALKDRYQKNYVLGPTHEELFTMAAMM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P+  YQIQ KFRDE RPR+G++R REF+MKDAYSFD+   G   SY KMF +
Sbjct: 121 KGSSYKDFPYNLYQIQTKFRDETRPRYGLIRVREFIMKDAYSFDIDEAGLHESYKKMFHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  R  L    ++A++G +GG LS EF  + + GE  V       DF    E T+  
Sbjct: 181 YENIMERCDLTYKIVKADTGAMGGSLSEEFQAITEIGEDVVVTCDGC-DFSSNLEITEVI 239

Query: 241 DIIS 244
           D  +
Sbjct: 240 DTST 243



 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 1/227 (0%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E  +   ++  +        +  D    N  ++ ++    A     +E     +      
Sbjct: 339 ECPIIMDREVANMKNFIVGANKTDHHIKNVNLKDFSVETVADIAQVHEGDICPVCGKPLK 398

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             +GIEVG+ F  GTKY+  +   ++  + K H V+MG YG G  R +AA++E  +D  G
Sbjct: 399 FCKGIEVGNTFKLGTKYAKALGLEYQDVNNKLHPVEMGCYGFGLERCMAAIVEQHNDASG 458

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP SVAPF+++++ + + D+       ++Y  L K G DV  DD  E+ G +F   +L
Sbjct: 459 IIWPASVAPFEVAVVVVSSKDEEQMRIGNELYEALKKEGVDVLLDDRKERPGVKFKDMEL 518

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P ++ VG + + D  VE + R      D++L EV+         
Sbjct: 519 IGIPYRITVG-RGIKDGNVEFRARTASESSDIALSEVVELVKKELKK 564


>gi|251781674|ref|YP_002995976.1| prolyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390303|dbj|BAH80762.1| prolyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 618

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 158/307 (51%), Gaps = 19/307 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG ++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGDDLYKLKNRDKSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHPNYDDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGETQVFCSKDFMDFPIPS 234
           Y  IF R GL    +  + G +GG  S EF+ +       D             D P   
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITPERTDLDRWVVLDKSIPSLADIPEEV 240

Query: 235 ENTDFDDIISLNSIVEQWTAP-----YAATSDVHN--------EKLFDSLPENKRVSARG 281
                 ++ +     E   A      YAA  ++              D+L E +  + + 
Sbjct: 241 LEEIKAELTAWMISGEDTIAYSSESSYAANLEMATNEYKPSSKVAAEDALTEVETPNCKT 300

Query: 282 IEVGHIF 288
           I+    F
Sbjct: 301 IDEVADF 307



 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/199 (34%), Positives = 102/199 (51%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+   +    RGIEVGHIF  GT+YS  M AT    +G+   +
Sbjct: 414 FQAEYVDIREVKEGEMSPDGHGILQFARGIEVGHIFKLGTRYSDSMGATILDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D    + A L   G +V  DD  E++GS+F+ +DL+G P++V VG K  +D  VEIK
Sbjct: 534 AAQDLTATLEADLMAKGYEVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-AADGIVEIK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   +++ + +I   
Sbjct: 593 IKATGDSIEVTADNLIETL 611


>gi|324992477|gb|EGC24398.1| proline--tRNA ligase [Streptococcus sanguinis SK405]
 gi|324995993|gb|EGC27904.1| proline--tRNA ligase [Streptococcus sanguinis SK678]
 gi|327460709|gb|EGF07044.1| proline--tRNA ligase [Streptococcus sanguinis SK1]
 gi|327472430|gb|EGF17861.1| proline--tRNA ligase [Streptococcus sanguinis SK408]
          Length = 616

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 104/257 (40%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV----LADTGETQVFCSKDFMDFPIPSEN 236
           Y +IF R  L    +  + G +GG  S EF+       D     V          IP E 
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITPDRTDLNRWVVLDKSVASFDEIPEEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +       + +V    
Sbjct: 241 QEAIRTELTSWMVSGED 257



 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M+A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLKFARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPM 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWGINFPKELAPFDVHLIPVNIKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  +I A L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 EALALTNQIEANLLSAGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   ++  + ++   S
Sbjct: 593 IKATGDTIEVHADNLLETLS 612


>gi|314966718|gb|EFT10817.1| threonyl-tRNA synthetase [Propionibacterium acnes HL082PA2]
          Length = 689

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 66/448 (14%), Positives = 129/448 (28%), Gaps = 45/448 (10%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   ++E  R D      +L L +    +   G+  + P G      +   +       G
Sbjct: 250 YQQRIKEAERRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGAMLRHLIEEHVIARHMEAG 308

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R  +       +  +
Sbjct: 309 FNFVHTPEITKGGLFHTSGHLPYYAGTMFPPMLVDEERDEEGNVTRAGQEYYLKAMNCPM 368

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +    
Sbjct: 369 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTYCTREQAPGE 428

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    +L I    GL    +   +         +FI   +                 
Sbjct: 429 -IKKQIEFFLSILADFGLNDFYLELSTRESDSAKEEKFIGSDED-----------WQVAT 476

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            + +                 A Y       + ++ D++    ++S    +         
Sbjct: 477 DTLDQVCRSTGLRLVPDPGGAAFYGPKV---SVQVRDAIGRTWQMSTIQYDFNQP----- 528

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG       + S  +G++     V+   + G   +W           
Sbjct: 529 ---ERFDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW------LSPVQ 579

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +   D        L   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 580 VRLVPVAEAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFILIAGGEDA 639

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
               V  + R       + L+E +   +
Sbjct: 640 EAGAVSFRLRDGSQINGVVLDEAVRIIT 667


>gi|293401596|ref|ZP_06645738.1| proline--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304854|gb|EFE46101.1| proline--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 563

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 110/381 (28%), Positives = 173/381 (45%), Gaps = 16/381 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  F   ++EN +D +  S  L++R GMI + S GIY  +P+G++ L  +  I+REE
Sbjct: 1   MKLSNSFFYTIRENAKDEDSVSGNLLVRAGMIKKSSSGIYMIMPMGKRVLQKIETIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + TGA E+ +P L   +++ +SGR +++G  M  L DR  K  + GPTHEE+ T     
Sbjct: 61  MDATGAQELLMPVLIPEEVYEKSGRREAFGANMFALKDRYQKRYVMGPTHEELFTIAATM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P+  YQIQ KFRDE RPR+G++R REF+MKDAYSFD+  E    SY KMF +
Sbjct: 121 KGSSYKDFPYNLYQIQTKFRDETRPRYGLIRVREFIMKDAYSFDVDEESMHVSYMKMFHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  RLGL    ++A++G +GG LS EF  +   GE  V   +   +F    E T+  
Sbjct: 181 YKKIMERLGLTYKIVKADTGAMGGSLSEEFQAITPIGEDVVVGCEHC-NFSSNLEITEVV 239

Query: 241 DIISLN----SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           D  S +      +E    P A T +        +  +  +     ++     +       
Sbjct: 240 DQASDDTAELRQMEVVKTPDAKTIEEVAAFFQKAADDFVKTLIYKVDGKTYAFLLKGTRE 299

Query: 297 PMSATFK-----------GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                               D  +          G + +   +I          +     
Sbjct: 300 LNETKVLKLLQANEMELADFDEVERVTHAKVGFAGPIGIACPIIMDREVTHMKNFIVGAN 359

Query: 346 PFKISLINIKAHDQVCRDACE 366
                ++N+   D       +
Sbjct: 360 QTDHHIVNVNVKDFEVSMIAD 380



 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 98/203 (48%), Gaps = 1/203 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   +N  V+ +     A      E     +  ++   A+GIEVG+ F  GTKY+  +  
Sbjct: 362 DHHIVNVNVKDFEVSMIADIAQVKEGDICPVCGHRLTFAKGIEVGNTFKLGTKYAESLGL 421

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            ++    K H VQMG YG G  R +AA++E  +D  GIIWP SVAP++++++ +   D+ 
Sbjct: 422 EYQDETNKLHPVQMGCYGFGLGRAMAAIVEQHNDASGIIWPASVAPYQVAIVVVAIKDEE 481

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                  +Y  LS  G DV  DD  E+ G +F   +L+G P ++ VG +   D KVE + 
Sbjct: 482 QMRVATALYEELSAAGIDVVLDDRKERPGVKFKDMELIGIPYRITVG-RGAVDGKVEFRA 540

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R     E+  + E          
Sbjct: 541 RTASENEEWLISETKAKLMEIVK 563


>gi|125718857|ref|YP_001035990.1| prolyl-tRNA synthetase [Streptococcus sanguinis SK36]
 gi|152112958|sp|A3CQI5|SYP_STRSV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|125498774|gb|ABN45440.1| Prolyl-tRNA synthetase, putative [Streptococcus sanguinis SK36]
          Length = 616

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 98/212 (46%), Positives = 138/212 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKRIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y +IF R  L    +  + G +GG  S EF+ 
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMA 212



 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M+A     +G+   +
Sbjct: 414 FTAEFVDIREVREGEISPDGQGVLKFARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPM 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I A L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 EALALTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   ++  + ++   S
Sbjct: 593 IKATGDTIEVHADNLLETLS 612


>gi|300870022|ref|YP_003784893.1| prolyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
 gi|300687721|gb|ADK30392.1| prolyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
          Length = 571

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 108/253 (42%), Positives = 157/253 (62%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+E P DA IAS+KLM+R  +  + S G+YS+LPLG + L+ ++ IIREE +  G+ 
Sbjct: 1   MPTLKEAPSDAIIASNKLMIRAALARKISNGLYSYLPLGVRVLNKISNIIREEMDAIGSN 60

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E  +P L S +L   SGR++ + KE+ RL DRND  M  GPTHEE  T   ++ I+SY++
Sbjct: 61  ECIMPILVSKELLTPSGRWERFKKELFRLKDRNDVDMAMGPTHEEAFTITAQNEIQSYKD 120

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP T YQI  KFRDE+RPRFGV+RS+EF MKDAYSF +T E    +YN M  +Y +IF R
Sbjct: 121 LPVTLYQIHTKFRDEIRPRFGVIRSKEFTMKDAYSFHITKECLDKTYNDMSGAYTKIFKR 180

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           +GL ++ ++A+SG +GG+ S EF+VL++ GE  +             +    +D  + + 
Sbjct: 181 MGLDTVSVKADSGAMGGEGSEEFMVLSEVGEETIIFCSKCNYRANVEKANVMEDEEAKSY 240

Query: 248 IVEQWTAPYAATS 260
             +     Y    
Sbjct: 241 TDKALEEVYTPDI 253



 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/189 (33%), Positives = 98/189 (51%), Gaps = 2/189 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
              D    K  D  PE   K    +G+E+GHIF  G KY+   + T    + K     MG
Sbjct: 374 VWGDFRVAKEGDRCPECGEKLYQKKGLELGHIFKLGDKYTQAFNFTVLDENNKAITPIMG 433

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R +A+VIE ++D KGII+P SVAP++  ++ I    +      E+IY  LS +
Sbjct: 434 CYGIGVNRALASVIEQNYDDKGIIFPISVAPYEAIVVAIDKETEESFKKAEEIYKALSAI 493

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +  +DD  E++G +    DL+G P+++IVG K +    VE K R      ++ LE+++
Sbjct: 494 GVETMFDDRKERLGVKLNDCDLIGVPMRIIVGKKSLERGVVEFKLRRDLESVEVKLEDIV 553

Query: 436 NYASHRFSN 444
            Y   +   
Sbjct: 554 EYVKAKKKE 562


>gi|327468388|gb|EGF13873.1| proline--tRNA ligase [Streptococcus sanguinis SK330]
          Length = 616

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 98/212 (46%), Positives = 138/212 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDAAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y +IF R  L    +  + G +GG  S EF+ 
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMA 212



 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M+A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLKFARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPM 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + +I +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWGINFPKELAPFDVHMIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I A L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 EALALTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   ++  + ++   S
Sbjct: 593 IKATGDTIEVHADNLLETLS 612


>gi|71904323|ref|YP_281126.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
 gi|114152264|sp|Q48R89|SYP_STRPM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71803418|gb|AAX72771.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
          Length = 618

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 159/307 (51%), Gaps = 19/307 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGETQVFCSKDFMDFPIPS 234
           Y  IF R GL    +  + G +GG  S EF+ +       D             D P   
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAVTPARTDLDRWVVLDKSIASMDDIPKEV 240

Query: 235 ENTDFDDIISLNSIVEQWTAP-----YAATSDVHN--------EKLFDSLPENKRVSARG 281
                 ++ +     E   A      YAA  ++              D+L E +    + 
Sbjct: 241 LEDIKAELAAWMISGEDTIAYSTESSYAANLEMATNEYKPSSKVAAEDALAEVETPHCKT 300

Query: 282 IEVGHIF 288
           I+    F
Sbjct: 301 IDEVAAF 307



 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 73/199 (36%), Positives = 104/199 (52%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+   V    RGIEVGHIF  GT+YS  M AT    +G+   +
Sbjct: 414 FQAEYVDIREVKEGEMSPDGHGVLQFARGIEVGHIFKLGTRYSDSMGATILDENGRTVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V +D   K+ A L   G DV  DD  E++GS+F+ +DL+G P++V VG K  ++  VEIK
Sbjct: 534 VAQDLTAKLEADLMAKGYDVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEIK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   +++ E +I   
Sbjct: 593 IKATGDSIEVNAENLIETL 611


>gi|146319615|ref|YP_001199327.1| prolyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|146321813|ref|YP_001201524.1| prolyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|253752613|ref|YP_003025754.1| prolyl-tRNA synthetase [Streptococcus suis SC84]
 gi|253754439|ref|YP_003027580.1| prolyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|253756372|ref|YP_003029512.1| prolyl-tRNA synthetase [Streptococcus suis BM407]
 gi|166980162|sp|A4W435|SYP_STRS2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166980163|sp|A4VXT8|SYP_STRSY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145690421|gb|ABP90927.1| Prolyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|145692619|gb|ABP93124.1| Prolyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|251816902|emb|CAZ52551.1| prolyl-tRNA synthetase [Streptococcus suis SC84]
 gi|251818836|emb|CAZ56679.1| prolyl-tRNA synthetase [Streptococcus suis BM407]
 gi|251820685|emb|CAR47447.1| prolyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|292559230|gb|ADE32231.1| Prolyl-tRNA synthetase [Streptococcus suis GZ1]
          Length = 620

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 102/257 (39%), Positives = 142/257 (55%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA + SH LMLR G + Q S GIYS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMIIPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLPLANRVIEKAKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++  AIE   P L SAD+W ESGRY++YG ++ +L +R     I GPTHEE +T + R 
Sbjct: 61  FDKIDAIEFLAPALLSADIWRESGRYETYGDDLYKLKNREGSDFILGPTHEETVTLLARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF  + E    +Y+    +
Sbjct: 121 AVQSYKQLPLNIYQIQPKYRDEKRPRNGLLRGREFIMKDGYSFHASYESLDQTYDDYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV----LADTGETQVFCSKDFMDFPIPSEN 236
           Y  IF R GL+   +  + G +GG  S EF+       D     V          IP + 
Sbjct: 181 YEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAITPDRTDLDRWVVLDKSVASFEEIPEDV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L   V    
Sbjct: 241 LEAFKAELLAWSVSGED 257



 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 16/199 (8%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                D+   K  +  P+   V    RGIE+GHIF  GT+YS  M+A     +G+   + 
Sbjct: 416 VTEYVDIREVKEGEPSPDGHGVLNFARGIEIGHIFKLGTRYSDSMNANILDENGRSMPII 475

Query: 314 MGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQV 360
           MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+ 
Sbjct: 476 MGCYGIGVSRLLSAVLEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEA 535

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  + I A L   G +V  DD  E++G +F+ +DL+G P++V VG K  +D  VE+K 
Sbjct: 536 AMELTQSIEASLVGAGYEVLTDDRNERVGVKFSDSDLIGLPIRVTVGKK-AADGIVEVKI 594

Query: 421 RLTGIREDMSLEEVINYAS 439
           + TG   ++ +++++    
Sbjct: 595 KGTGDTVEVHVDQLLETLQ 613


>gi|324989750|gb|EGC21693.1| proline--tRNA ligase [Streptococcus sanguinis SK353]
          Length = 616

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 98/212 (46%), Positives = 138/212 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y +IF R  L    +  + G +GG  S EF+ 
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMA 212



 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M+A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLKFARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPM 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I A L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 DAVALTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   ++  + ++   S
Sbjct: 593 IKATGDTIEVHADNLLETLS 612


>gi|291299271|ref|YP_003510549.1| prolyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
 gi|290568491|gb|ADD41456.1| prolyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
          Length = 562

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 100/233 (42%), Positives = 138/233 (59%), Gaps = 1/233 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  + P L++ P +AE  SH+ ++R G I Q + G YS LPL  +    + A+IREE
Sbjct: 1   MRWSTLYAPTLRDFPAEAEAPSHQRLVRAGFIRQLAAGHYSLLPLAIRVRAKIMAVIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E  +P +  A++W  SGR+D  G EM RL DR    +  G THEE+ T    +
Sbjct: 61  LDRIGAQEFLLPAMHPAEIWHASGRWDVMGSEMFRLKDRKGAQLALGMTHEEIFT-SIAT 119

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  +YQ Q KFRDE RP+ G++R REF MKD+YSFDL   G   +++K   +
Sbjct: 120 ELNSYKQLPQIWYQFQTKFRDEPRPKGGLLRVREFTMKDSYSFDLDAAGLDAAFDKHRGA 179

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           YLRIF RLG+ +IP+ A SG +GG  S EF+  A +GE  V          + 
Sbjct: 180 YLRIFERLGIPAIPVDASSGTMGGSGSTEFMSPAPSGEDLVMRCGCGYAANVE 232



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/191 (35%), Positives = 99/191 (51%), Gaps = 4/191 (2%)

Query: 256 YAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                D+   +  ++ PE  +     R IEVGHIF  GTKYS  + A    A+GK   V 
Sbjct: 374 VGRWLDLRRAQPGEACPECGQPLEEVRTIEVGHIFKLGTKYSEVLDAKVLDANGKAVPVV 433

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MGSYGIG  R +AA++E+ HD  GI WP +VAP+ ++++ +   D   R A E +Y +LS
Sbjct: 434 MGSYGIGVERAIAAIVEAHHDEAGIKWPVNVAPYTVAVVMMSTKDDEVRQAAENLYRQLS 493

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               DV  DD   + G++    +L+G P +V VG++ +    VEI  R TG  E + + E
Sbjct: 494 DT--DVILDDRDARPGAKLTDVELVGIPFRVTVGARGLKTGSVEITSRATGETETVPVAE 551

Query: 434 VINYASHRFSN 444
                     N
Sbjct: 552 AAARVRDLLKN 562


>gi|15639153|ref|NP_218599.1| prolyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025393|ref|YP_001933165.1| prolyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
 gi|6094411|sp|O83195|SYP_TREPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226701353|sp|B2S2A7|SYP_TREPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|3322426|gb|AAC65149.1| prolyl-tRNA synthetase (proS) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017968|gb|ACD70586.1| prolyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
          Length = 617

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 91/235 (38%), Positives = 134/235 (57%), Gaps = 1/235 (0%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S +F P L+  P DA IASH+L++R G + + + G++++LPLG +    + AIIREE  
Sbjct: 1   MSAFFAPTLRSAPADATIASHQLLMRAGYVRKIANGLFAYLPLGLRVRHKIEAIIREELE 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G +E + P +  A+LW ESGR+   G E+LR  +R D  +++ PT EE  T + R   
Sbjct: 61  AIGCLECTAPVVTPAELWKESGRWYRMGAELLRAKNRLDHELLFSPTAEESFTALVRGDC 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++ P + YQI  K+RDE+RPR+G+MR+REF M DAYSF         +Y K   +Y 
Sbjct: 121 TSYKHFPLSLYQINAKYRDEIRPRYGLMRAREFTMADAYSFHTDCACLARTYEKFAHAYR 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            IF R+GL  I + A  G +GG  S EF+V +  G+  +        +    E  
Sbjct: 181 AIFRRIGLSVIAVHAHLGAMGGQESEEFMVESAVGDNTLLLCPHCT-YAANCEKA 234



 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 5/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           A +D+   +  D            +G E+GH+F  G KY+  M  TF    G   +  MG
Sbjct: 425 AVADLMLVRAGDRCIHCGAPLYEKKGNELGHLFKLGDKYTRSMHLTFTDEQGVRQFPLMG 484

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R +A+V+E+ HD +GI WP +++P+ + LI I  H Q    A E +Y +L   
Sbjct: 485 CYGIGLDRTLASVVENHHDTRGISWPLAISPYAVVLIPI-PHTQAPYAAAEALYVQLRTR 543

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V +DD  E+ G +FA ADL+G PL+V++ +K +    VE   R        + EE  
Sbjct: 544 GVEVLFDDRAERPGVKFADADLIGIPLRVVLSAKTLPR--VECTTRCGAHTYFFTQEEAS 601

Query: 436 NYASHRFS 443
            + +    
Sbjct: 602 EHIARLLE 609


>gi|332365812|gb|EGJ43569.1| proline--tRNA ligase [Streptococcus sanguinis SK355]
          Length = 616

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 97/212 (45%), Positives = 137/212 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I   
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVHD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y +IF R  L    +  + G +GG  S EF+ 
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMA 212



 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M+A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLKFARGIEIGHIFKLGTRYSESMNANVLDENGRAVPM 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I A L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 EALALTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   ++  + ++   S
Sbjct: 593 IKATGDTIEVHSDNLLETLS 612


>gi|171778813|ref|ZP_02919875.1| hypothetical protein STRINF_00734 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282459|gb|EDT47883.1| hypothetical protein STRINF_00734 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 618

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 105/279 (37%), Positives = 153/279 (54%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSQMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLNADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    EG   +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHADYEGLDTTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV----LADTGETQVFCSKDFMDFPIPSEN 236
           Y  IF R GL    +  + G +GG  S EF+       D     V          IP++ 
Sbjct: 181 YEAIFTRAGLDFKAIIGDGGAMGGKDSQEFMAITPDRTDLDRWLVLDKSIASIDEIPADV 240

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            +       + +V        +T   +   L  +  E K
Sbjct: 241 LEDIKKELASWLVSGEDTIAYSTESSYAANLEMASNEYK 279



 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+ K V    RGIE+GHIF  GT+YS  M AT    +G+   +
Sbjct: 414 FEAEYVDIREVKEGEISPDGKGVLKFARGIEIGHIFKLGTRYSESMGATILDQNGRAIPI 473

Query: 313 QMGSYGIGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + +I +   D+
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVSKTPKGAYRFAWGINFPKELAPFDVHVITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +    K+ A L   G +V  D+  E++GS+F+ +DL+G P++V VG K  +D  VE+K
Sbjct: 534 EAQALTAKVEAELVAKGYEVLVDNRNERVGSKFSDSDLIGLPIRVTVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   +++ E +I   
Sbjct: 593 IKATGDTIEVNAENLIETL 611


>gi|153002179|ref|YP_001367860.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS185]
 gi|151366797|gb|ABS09797.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS185]
          Length = 398

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 66/428 (15%), Positives = 135/428 (31%), Gaps = 40/428 (9%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
               + +L L        + G+  W P G     ++   IR    R G  E++ P     
Sbjct: 4   HREIAEQLDLF--HSEPQAPGMIFWHPNGWALFRDIQEHIRRVYRRNGFEEVNTPVFMKK 61

Query: 78  DLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           +LW  SG  D + + M     + +    +  P        +F+  + S+R+LP   ++  
Sbjct: 62  ELWQTSGHMDMFAENMFFGGGKENIDEYVLKPMSCPAHILLFKRGVHSHRDLPLRLFEFG 121

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           L  R+E      G +R+R+F   DA+ F      ++           +++   G  ++ +
Sbjct: 122 LVHRNESSGSLNGCLRARQFTQDDAHVFCC-WSQAEEEIRGFLQRAKQVYGDYGYHNLDV 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           +  + P     S E    A        C  +  D    +                   A 
Sbjct: 181 KISTKPEKALGSDEQWRRAQK-LLDSACYSEGFDAEYQA----------------GEGAF 223

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QM 314
           Y    ++    L DS+    +      +    F    ++       +    G+      M
Sbjct: 224 YGPKIEL---SLTDSMGRCWQCGTIQFD----FNLPERFD----VQYTNEQGEFERPVIM 272

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++     ++     G    W           + I + ++       ++      
Sbjct: 273 HQAMYGSIERWLGILLEVSQGNLPDW------LHPVPVAIASVNESNSQFVRQLATLCLA 326

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V  D     +  +         P  + VG K  ++  V +K R  G+   + L E+
Sbjct: 327 RDMRVLVDISQNSVARKMKRFHKQKVPYILTVGDKEEAEKCVSVKCRKDGVMTHIPLAEL 386

Query: 435 INYASHRF 442
            +Y + + 
Sbjct: 387 ADYLADKL 394


>gi|170290551|ref|YP_001737367.1| threonyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174631|gb|ACB07684.1| threonyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 638

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 147/439 (33%), Gaps = 32/439 (7%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           ++ +   +   RD  +   +L L +        G+  W P G +    +   +       
Sbjct: 225 EFLVRREEIRKRDHRVVGPQLDLFSMPSEIIGPGLILWHPKGARVRRIIEDFLVRVHLSR 284

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +  + LW  SG   +Y ++ + + ++        P +      I+ S  +S
Sbjct: 285 GYELVYSPHIAYSTLWKISGHL-NYYRDYMYVFEKEGIEHAVKPMNCPFHILIYNSKRRS 343

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP   +++   +R E      G++R+R F   DA+ F    +               
Sbjct: 344 YRELPLRLFELGTVYRFEKSGVLHGLLRARGFTQDDAHIFTTREDLEDEV---------- 393

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
               LGL  +           +L  E         ++   S +       S         
Sbjct: 394 ----LGLIDLNEYLMRSFGFEELKVEISTWDPRRRSEYMGSDEDWSAAQSSLEGALRRKG 449

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I+E   A Y    D+   KL DS+    ++S   I+    F    ++ L      K
Sbjct: 450 YRYEIMEGEAAFYGPKIDM---KLVDSIGREWQLSTIQID----FNLPRRFDLKY---VK 499

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
               ++H V +    +G++     ++   + G   +W           + I    Q    
Sbjct: 500 ADGSEEHIVMIHRALLGSIERFFGILLEHYAGNFPLW------IAPIQLRILPVSQAQEG 553

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E++ A +S  G           +  +   ++L   P+  I+G + +   ++ ++ +  
Sbjct: 554 RAEELLALMSARGVRADIRKAESTLSYRIRESELEKIPIVAIIGEREMKTGEISVRVKGK 613

Query: 424 GIREDMSLEEVINYASHRF 442
           G    MSLE+         
Sbjct: 614 GNLGSMSLEDFFRTFGKEL 632


>gi|315080595|gb|EFT52571.1| threonyl-tRNA synthetase [Propionibacterium acnes HL078PA1]
          Length = 689

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 67/448 (14%), Positives = 129/448 (28%), Gaps = 45/448 (10%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   ++E  R D      +L L +    +   G+  + P G      +   +       G
Sbjct: 250 YQQRIKEAERRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGAMLRHLIEEHVIARHMEAG 308

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R  +       +  +
Sbjct: 309 FNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYLKAMNCPM 368

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F++I   +R E      G+ R R F   D++++    +    
Sbjct: 369 HNLIFRSRGRSYRELPLRFFEIGHDYRYEKSGVVHGLTRMRGFAQDDSHTYCTREQAPGE 428

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    +L I    GL    +   +         +FI   +                 
Sbjct: 429 -IKKQIEFFLSILADFGLNDFYLELSTRESDSAKKEKFIGSDED-----------WQVAT 476

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            + +                 A Y       + ++ D++    ++S    +         
Sbjct: 477 DTLDQVCRSTGLQLVPDPGGAAFYGPKV---SVQVRDAIGRTWQMSTIQYDFNQP----- 528

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG       + S  +G++     V+   + G   +W           
Sbjct: 529 ---ERFDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW------LSPVQ 579

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +   D        L   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 580 VRLVPVAEAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFILIAGGEDA 639

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
               V  + R       + L+E +   +
Sbjct: 640 EAGAVSFRLRDGSQVNGVVLDEAVRIIA 667


>gi|254730107|ref|ZP_05188685.1| prolyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
          Length = 232

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 112/231 (48%), Positives = 156/231 (67%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I+LA+TGE+QV+C + ++D  +P  +TDF +   L  IV +WT PYAAT ++H+E  +  
Sbjct: 1   IILAETGESQVYCDRAYLDLAVPGADTDFRNDAQLTDIVTRWTTPYAATDEMHDEADWAK 60

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +    +VSARGIEVGHIF+FGTKYS PM A  +G DGK+H V MGSYGIG  R+VAA IE
Sbjct: 61  VKPESQVSARGIEVGHIFHFGTKYSEPMGAKVQGPDGKEHLVSMGSYGIGPSRLVAAAIE 120

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +SHD  GIIWP ++APF   ++N+K  D+ C    EK+Y  L+  G D   DD  E+ G+
Sbjct: 121 ASHDDAGIIWPKTIAPFGAGIVNMKPGDEGCDGVSEKLYEALTNAGVDPLLDDKDERPGA 180

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +FA  DL+G P QVIVG + V+  +VE+K R TG R+ + ++  IN  + +
Sbjct: 181 KFATMDLIGLPTQVIVGPRGVAAGEVEVKDRKTGERQSLGIKAAINMLTAQ 231


>gi|325695492|gb|EGD37392.1| proline--tRNA ligase [Streptococcus sanguinis SK150]
          Length = 616

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 103/257 (40%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV----LADTGETQVFCSKDFMDFPIPSEN 236
           Y +IF R  L    +  + G +GG  S EF+       D     V          IP + 
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITPDRTDVNRWVVLDKSVASFDEIPEDA 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +       + +V    
Sbjct: 241 QEAIRTELTSWMVSGED 257



 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M+A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLKFARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPM 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I A L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 EALTLTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + +G   ++  + ++   S
Sbjct: 593 IKASGDTIEVHADNLLETLS 612


>gi|269986430|gb|EEZ92716.1| threonyl-tRNA synthetase [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 635

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 147/443 (33%), Gaps = 39/443 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +++E    D +    +L L        S G   +   G    + +    +E   +  
Sbjct: 222 YLKLIEERKEHDHKKIGKELELFE--FSDLSPGSPFFTTKGTIIYNELLKFAKELDKKYD 279

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKS 124
             E+  P +   DLW  SG +D Y + M R+    +D+     P +      +F+S  +S
Sbjct: 280 YTEIITPIIAKIDLWKISGHFDKYKENMFRVTPFESDEEYGLKPMNCPFSALLFKSKTRS 339

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP          R EL     G++R+R     D++ +    +           + L 
Sbjct: 340 YRDLPMRLSDYGFLHRYELEGTLDGLLRTRLMEQNDSHVYVTEEQIESEIIRMF--NILD 397

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
             ++       M   + P                       +   D          D   
Sbjct: 398 DTYKPFNFKPIMVLATRPEKR-----------------IGEEALWDKAEGILKGALDKKG 440

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D++       + +   VS   ++    F    ++     A + 
Sbjct: 441 YKYEIKEGDGAFYGPKIDIYVLDFSGRVEDAYAVSTIQLD----FNLAVRFD----AKYI 492

Query: 304 GADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G D K+H+   +    +G +     +I  +  G+  +W   V    +++       +   
Sbjct: 493 GKDNKEHFPIVIHRSIMGTIGRFMGIILENLKGELPVWLAPVQVKVLTIT------ERNN 546

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  E I  +L         D     +  +   A L   P  +++G K      + +++R 
Sbjct: 547 EYAEGIIKKLKDNNIREESDIENGTLDYKIRKAQLEKIPFIIVIGDKEEEKKTIAVRNRK 606

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
              R ++ ++E I    +  +N 
Sbjct: 607 GKTRYNVDIDEFIKNLLNDINNK 629


>gi|222152444|ref|YP_002561619.1| prolyl-tRNA synthetase [Streptococcus uberis 0140J]
 gi|254782919|sp|B9DTD1|SYP_STRU0 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|222113255|emb|CAR40772.1| prolyl-tRNA synthetase [Streptococcus uberis 0140J]
          Length = 618

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 101/242 (41%), Positives = 147/242 (60%), Gaps = 2/242 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++ +  I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMMRAGYVRQVSAGIYAYLPLANRTIEKLKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG ++ +L +R     I GPTHEE  T + R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYETYGDDLYKLKNRESSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHQNYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   +  + G +GG  S EF+ +    E         +D  IPS +   +
Sbjct: 181 YEAIFTRSGLEFKGIIGDGGAMGGKDSQEFMAITP--ERTDLNRWLVLDKSIPSLSDIPE 238

Query: 241 DI 242
           D+
Sbjct: 239 DV 240



 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/199 (34%), Positives = 102/199 (51%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  ++ P+       ARGIEVGHIF  GT+YS  + A     +GK   +
Sbjct: 414 FKAEFVDIREVKEGEASPDGHGHLQFARGIEVGHIFKLGTRYSDSLGANILDENGKSIPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF I LI +   D+
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVSKTPKGEYRYSWGINFPKELAPFDIHLITVNTKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   +K+   L   G +V  DD  E++GS+F+ +DL+G P+++ VG K  S+  VEIK
Sbjct: 534 EAQTLTDKLEKELMTKGYEVLTDDRNERVGSKFSDSDLIGLPIRITVGKK-ASEGIVEIK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + +G   +++ E VI   
Sbjct: 593 IKASGDSIEVNAENVIETL 611


>gi|332365115|gb|EGJ42878.1| proline--tRNA ligase [Streptococcus sanguinis SK1059]
          Length = 616

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 98/212 (46%), Positives = 138/212 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y +IF R  L    +  + G +GG  S EF+ 
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMA 212



 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M+A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLKFARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPM 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I A L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 DAVALTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   ++  + ++   S
Sbjct: 593 IKATGDTIEVHADNLLETLS 612


>gi|328944571|gb|EGG38732.1| proline--tRNA ligase [Streptococcus sanguinis SK1087]
          Length = 616

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 98/212 (46%), Positives = 138/212 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y +IF R  L    +  + G +GG  S EF+ 
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMA 212



 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M+A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLKFARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPM 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I A L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 DAVALTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   ++  + ++   S
Sbjct: 593 IKATGDTIEVHADNLLETLS 612


>gi|262283493|ref|ZP_06061259.1| prolyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
 gi|262260984|gb|EEY79684.1| prolyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
          Length = 616

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 108/394 (27%), Positives = 181/394 (45%), Gaps = 19/394 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH L+LR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALLLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRY++YG ++ +L +R     I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYETYGDDLFKLKNREGSDFILGPTHEETFTALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVTYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGETQVFCSKDFMDFPIPS 234
           Y +IF R  +    +  + G +GG  S EF+ +       D             + P   
Sbjct: 181 YEKIFTRSEIDFKAIIGDGGAMGGKDSQEFMAITPDRTDLDRWLVLDKSVASLDEIPAGV 240

Query: 235 ENTDFDDIISLNSIVEQWTAP-----YAATSDVHNEKLFDS--------LPENKRVSARG 281
                 ++ +     E   A      YAA  ++   +   S        L   +  + + 
Sbjct: 241 LEAIKAELSNWMVSGEDTIAYSSESSYAANLEMATNEYKPSNCVVAETELVRVETPNCKT 300

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           I+    F   ++     +  +   +     + +G+  +  +++   +     +       
Sbjct: 301 IDEVAAFLQVSEEQTIKTLVYIADEKPVVALLVGNDQLNEVKLKNHLGADFFEAATEAEV 360

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
             +       +      +      ++    LS  
Sbjct: 361 QELFGANFGSLGPVNLPEEVTIIADRKVQDLSNA 394



 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+   V    RGIE+GHIF  GT+YS  M+AT    +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGNGVLKFARGIEIGHIFKLGTRYSDSMNATVLDENGRAVPL 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 VMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +KI   L   G +V  DD  E++G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 ESLALTDKIEESLVGAGYEVLVDDRNERVGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + +G   ++  + +I   S
Sbjct: 593 IKASGDTIEVHADNLIETLS 612


>gi|15675760|ref|NP_269934.1| prolyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71911486|ref|YP_283036.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|81856026|sp|Q99XY4|SYP_STRP1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|13622982|gb|AAK34655.1| putative prolyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71854268|gb|AAZ52291.1| prolyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
          Length = 618

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 159/307 (51%), Gaps = 19/307 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGETQVFCSKDFMDFPIPS 234
           Y  IF R GL    +  + G +GG  S EF+ +       D             D P   
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSIASMDDIPKEV 240

Query: 235 ENTDFDDIISLNSIVEQWTAP-----YAATSDVHN--------EKLFDSLPENKRVSARG 281
                 ++ +     E   A      YAA  ++              D+L E +    + 
Sbjct: 241 LEDIKAELAAWMISGEDTIAYSTESSYAANLEMATNEYKPSSKVAAEDALAEVETPHCKT 300

Query: 282 IEVGHIF 288
           I+    F
Sbjct: 301 IDEVAAF 307



 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 73/199 (36%), Positives = 104/199 (52%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+   V    RGIEVGHIF  GT+YS  M AT    +G+   +
Sbjct: 414 FQAEYVDIREVKEGEMSPDGHGVLQFARGIEVGHIFKLGTRYSDSMGATILDENGRTVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V +D   K+ A L   G DV  DD  E++GS+F+ +DL+G P++V VG K  ++  VEIK
Sbjct: 534 VAQDLTAKLEADLMAKGYDVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEIK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   +++ E +I   
Sbjct: 593 IKATGDSIEVNAENLIETL 611


>gi|319940262|ref|ZP_08014614.1| prolyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
 gi|319810564|gb|EFW06900.1| prolyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
          Length = 619

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 98/212 (46%), Positives = 136/212 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++ V  I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQISAGVYSYLPLANRVIEKVKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRYD+YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYDTYGEDLYKLKNREGSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y  IF R  +    +  + G +GG  S EF+ 
Sbjct: 181 YENIFTRSEVDFKGIIGDGGAMGGKDSQEFMA 212



 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 16/207 (7%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M+AT    +G+   V
Sbjct: 414 FTAEYVDIREVREREVSPDGQGVLKFARGIEIGHIFKLGTRYSESMNATVLDENGRAVPV 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 VMGCYGIGVSRLLSAVMEQHARLFVNKTPKGDYRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E++ A L K G +V  DD  E+ G +F+ +DL+G P++V +G K  +D  VE+K
Sbjct: 534 EALALTEQLEAELLKAGYEVLTDDRNERAGVKFSDSDLIGLPIRVTIGKK-AADRIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++ ++ ++   +     ++
Sbjct: 593 IKATGDTIEVHVDNLLETLAILTKEDK 619


>gi|323350534|ref|ZP_08086196.1| proline--tRNA ligase [Streptococcus sanguinis VMC66]
 gi|322123216|gb|EFX94901.1| proline--tRNA ligase [Streptococcus sanguinis VMC66]
          Length = 616

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 98/212 (46%), Positives = 138/212 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y +IF R  L    +  + G +GG  S EF+ 
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMA 212



 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M+A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLKFARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPM 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I A L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 EALALTDQIEANLLSSGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   ++  + ++   S
Sbjct: 593 IKATGDTIEVHADNLLETLS 612


>gi|306832697|ref|ZP_07465834.1| proline--tRNA ligase [Streptococcus bovis ATCC 700338]
 gi|304425153|gb|EFM28282.1| proline--tRNA ligase [Streptococcus bovis ATCC 700338]
          Length = 618

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 106/279 (37%), Positives = 154/279 (55%), Gaps = 4/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++   AI+REE
Sbjct: 1   MKQSQMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKAIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLNADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    EG   +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHADYEGLDTTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV----LADTGETQVFCSKDFMDFPIPSEN 236
           Y  IF R GL    +  + G +GG  S EF+       D     V          IP++ 
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITPDRTDLDRWLVLDKSIASIDEIPADV 240

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            +       + +V        +T   +   L  +  E K
Sbjct: 241 LEDIKKELASWLVSGEDTIAYSTESSYAANLEMASNEYK 279



 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 68/199 (34%), Positives = 103/199 (51%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+ K V    RGIE+GHIF  GT+YS  M AT    +G+   +
Sbjct: 414 FEAEYVDIREVKEGEISPDGKGVLKFARGIEIGHIFKLGTRYSESMGATILDQNGRAIPI 473

Query: 313 QMGSYGIGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + +I +   D+
Sbjct: 474 IMGCYGIGVSRILSAVIEQHARLFVSKTPKGAYRFAWGINFPKELAPFDVHVITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +    K+ A L   G +V  DD  E++GS+F+ +DL+G P++V VG K  +D  VE+K
Sbjct: 534 EAQALTAKVEAELVAKGYEVLVDDRNERVGSKFSDSDLIGLPIRVTVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   +++ E +I   
Sbjct: 593 IKATGDTIEVNAENLIETL 611


>gi|261839095|gb|ACX98860.1| prolyl-tRNA synthetase [Helicobacter pylori 52]
          Length = 577

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 101/235 (42%), Positives = 136/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +  M  +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNMQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 89/173 (51%), Gaps = 2/173 (1%)

Query: 260 SDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P    +    + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDHCPNCQGELKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           DV  DD   + G++    +L+G  L +I+G + + + + E   R    ++ + 
Sbjct: 510 DVLLDDRDARFGAKMRDFELIGERLALIIGKQTLENKEFECIKRANLEKQTLK 562


>gi|332359309|gb|EGJ37130.1| proline--tRNA ligase [Streptococcus sanguinis SK49]
          Length = 616

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 98/212 (46%), Positives = 138/212 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y +IF R  L    +  + G +GG  S EF+ 
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMA 212



 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ +     ARGIE+GHIF  GT+YS  M+A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGILKFARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPL 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I A L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 EAVTLTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   ++  + ++   S
Sbjct: 593 IKATGDTIEVHADNLLETLS 612


>gi|325686585|gb|EGD28611.1| proline--tRNA ligase [Streptococcus sanguinis SK72]
 gi|325697433|gb|EGD39319.1| proline--tRNA ligase [Streptococcus sanguinis SK160]
          Length = 616

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 98/212 (46%), Positives = 138/212 (65%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKTKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y +IF R  L    +  + G +GG  S EF+ 
Sbjct: 181 YEKIFTRSELDFKAIIGDGGAMGGKDSQEFMA 212



 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M+A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLKFARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPM 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I A L   G +V  DD  E+ G +F+ +DL+G P++V VG K  ++  VE+K
Sbjct: 534 KALALTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKK-AAEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   ++  + ++   S
Sbjct: 593 IKATGDTIEVHADNLLETLS 612


>gi|255730209|ref|XP_002550029.1| threonyl-tRNA synthetase, mitochondrial precursor [Candida
           tropicalis MYA-3404]
 gi|240131986|gb|EER31544.1| threonyl-tRNA synthetase, mitochondrial precursor [Candida
           tropicalis MYA-3404]
          Length = 455

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 76/461 (16%), Positives = 152/461 (32%), Gaps = 67/461 (14%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
            +  I++ +L+  T      S G   +LP G + L+ +   ++ +Q + G  E+  P + 
Sbjct: 32  SNHAISTKQLLYTT---DPVSPGSIFFLPHGTRILNKLIQFMKNQQTKYGFQEVITPLIF 88

Query: 76  SADLWVESGRYDSYGKEMLR-----------LADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              LW +SG +D+Y  +M +             +  +      P +      IF    +S
Sbjct: 89  KTKLWKKSGHWDNYKDDMFKVVGNDLSKEEHTDNIEEHEYGLKPMNCPSHCMIFAKFDRS 148

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y+ LP  +       R+E      G+ R R F   D + F    +  +            
Sbjct: 149 YQELPIRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHIFCSMSQIDQE-IKNTLTLIKD 207

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            +   G+  I     + P                E +     +  +          +   
Sbjct: 208 TYKVFGIDDIEFYLSTRP----------------EEKYIGDIETWNKAEDQLKNVLNSTA 251

Query: 244 SLNSI--VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                   E   A Y    DV    L D+  +  +V    ++    F    ++       
Sbjct: 252 GEGQWSIREGDGAFYGPKIDVL---LKDAFGKKHQVGTIQLD----FQLPNRF----ELK 300

Query: 302 FKGADGK--DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           + G DG      + +     G++    A++    D     WP  + P +  +I I    +
Sbjct: 301 YVGEDGNRDHQPILVHRAVYGSLERFFAILL---DHYQGKWPFWINPRQAIIIPIN---E 354

Query: 360 VCRDACEKIYAR--------------LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
               A E +  +              L+     V  D  GE IG++   A   G+   ++
Sbjct: 355 SHVQAAESLQQKLGGDLLNSDESIAPLTSYNFYVDIDKRGETIGARTKEAIQKGYSYIIL 414

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +G K +++    ++ R     ++M+ EE+ +         +
Sbjct: 415 IGDKEITNGTFAVRTRDDRKVKNMTSEEIYDLFVQLEKTYK 455


>gi|238879230|gb|EEQ42868.1| threonyl-tRNA synthetase, mitochondrial precursor [Candida albicans
           WO-1]
          Length = 455

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 78/475 (16%), Positives = 157/475 (33%), Gaps = 72/475 (15%)

Query: 7   FLPI-LQEN----PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           FL    +E       +  I+S +L+  T      S G   +LP G + L+ +   ++ +Q
Sbjct: 18  FLSTKTKEAESSTQSNHVISSKQLLYTT---DPTSPGSIFFLPHGTRILNKLIQFMKNQQ 74

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-----------LADRNDKAMIYGPTH 110
            + G  E+  P +    LW +SG +D+Y  +M +             +  +      P +
Sbjct: 75  TKYGFQEVVTPLIFKTKLWKKSGHWDNYKDDMFKVVGNDITKEEYTDNIEEHEYGLKPMN 134

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
                 IF    +SY+ LP  +       R+E      G+ R R F   D + F    + 
Sbjct: 135 CPSHCMIFAKFDRSYQELPVRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHIFCSMDQI 194

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                          ++  G+  I     + P                E +     +  D
Sbjct: 195 DGE-IKNTLELIKDTYNVFGINEIEFYLSTRP----------------EDKFIGEIETWD 237

Query: 230 FPIPSENTDFDDIISLNSIV--EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                     +      +    E   A Y    DV    L D+  +  +V    ++    
Sbjct: 238 IAESQLKNVLNSTAGEGNWATREGDGAFYGPKIDVL---LKDAFNKKHQVGTIQLD---- 290

Query: 288 FYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           F    ++       + G DG      + +     G++    A++    D     WP  + 
Sbjct: 291 FQLPNRF----ELKYVGEDGKRDHQPILVHRAVFGSLERFFAILL---DHYQGKWPFWIN 343

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLS--------------KVGCDVFWDDMGEQIGSQ 391
           P +  ++ I    +      E++  +LS                   V  D  GE +G++
Sbjct: 344 PRQALIVPIN---ESHVPVAEELQKKLSGDIVSCDNAIAPLTGFNFHVDIDKRGETVGAR 400

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              A   G+   +++G K +++    ++ R     ++M+ +E+         + +
Sbjct: 401 TKDAIQKGYSYLIMIGDKDIANGTFAVRSRDDRKIKNMTSDEIYKMFIALEQSYK 455


>gi|328773873|gb|EGF83910.1| hypothetical protein BATDEDRAFT_18299 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 706

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/440 (14%), Positives = 132/440 (30%), Gaps = 41/440 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     +  S G   +LP G +  + +  + R E  + G  E+ 
Sbjct: 297 EEAEKRDHRKIGTEQELF--FFNDFSPGSAFFLPHGTRIYNTLIDLQRSEYRKRGFHEVV 354

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +  LW  SG + +Y ++M    D   +     P +      IF++  +SYR LP 
Sbjct: 355 TPNMYNTKLWERSGHWANYHEDMF-ALDVEKEKFALKPMNCPGHCLIFKNRDRSYRELPL 413

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+E      G+ R R F   DA+ F    +               I+   G
Sbjct: 414 RLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRLDQIGTEM-EGCLDFLKHIYSIFG 472

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                ++  + P                           D          +   S  S+ 
Sbjct: 473 FTF-ELKLSTRPENF-----------------LGEIATWDQAEKLLEEALNKFGSTWSLN 514

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E   A Y    D+    + D+L    + +   ++    F    ++ L             
Sbjct: 515 EGDGAFYGPKIDI---VISDALRRRHQCATIQLD----FQLPDRFELEYRTDDPANQFSR 567

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             +   +      R++A + E+                    +          +   K+ 
Sbjct: 568 PVMIHRAILGSVERMIAILTENFAGKWPFWLSPRQVIVVPIAVPFN-------EYATKVA 620

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---TGIR 426
            +L   G     D     +  +   A++  +    +VG +      V  ++R    +  +
Sbjct: 621 NQLYAAGLYAEADVSDLTLKKKIRNAEIAQWNFIFVVGEEEEKSDSVNCRNRDDPLSKNK 680

Query: 427 ED-MSLEEVINYASHRFSNN 445
              +S++E+         + 
Sbjct: 681 GVCVSVQEIQGKLIKIQDSR 700


>gi|308063100|gb|ADO04987.1| prolyl-tRNA synthetase [Helicobacter pylori Sat464]
          Length = 577

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIASN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   + K+ + +MG Y
Sbjct: 390 ADIVQVKESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNAKERFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D   +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDGAQKKLAFEVYERLLQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +IVG + +   + E   R    ++ +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTLKDIELEEK 569

Query: 438 ASHRFSN 444
                 +
Sbjct: 570 ILEMLES 576


>gi|284931186|gb|ADC31124.1| threonyl-tRNA synthetase [Mycoplasma gallisepticum str. F]
          Length = 573

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 139/439 (31%), Gaps = 34/439 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L I++E   RD    +  L L T        G+  WLP GQ     +   +   Q + G
Sbjct: 163 YLEIIEEQKQRDHRRINKILELFT-FNQLAGPGMPIWLPNGQIVRQLIGDYVHSVQKKFG 221

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKS 124
            + ++ P L + DL+ +SG Y+ Y K+M       D   M+  P        ++ +  ++
Sbjct: 222 FMAVNTPILGNVDLYKKSGHYNHYAKDMFPELALLDGDKMMLRPMTCPHHCLVYLNKPRN 281

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y +LP    +  L  R E      G+ R R   + D + F    +         +     
Sbjct: 282 YYDLPMRLSEDALLHRYEASGGLTGLERVRAMTLLDNHIFCRLDQIKTE-ILNAYQVIKE 340

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +     LK   +           S                ++               D+ 
Sbjct: 341 VIGTFNLKFHRIDLSLHDPNDKQSF-------------IDNEQMWARSENQLEDALKDLG 387

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +      A Y    D    ++  +L +   VS   ++    F   ++        +K
Sbjct: 388 LEYTKQVGEAAFYGPKIDF---QVKTALNKIITVSTIQLD----FSLPSE--EKFDIKYK 438

Query: 304 GADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             D      V +    IG      A +     G   +W           + I  ++ V  
Sbjct: 439 TKDNTYEQGVIIHLGIIGTYERFVATLLEQTKGALDLWLA-----PKQAVIIPVNNSVHL 493

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHR 421
           + C ++  +L      V  D   E++  +     +   P+Q+IVG   + +   +  +  
Sbjct: 494 EGCNQLLEKLLAKDLRVTVDSRDERLNKKIRDHQVNKIPVQIIVGDNELKNPDLITYRLY 553

Query: 422 LTGIREDMSLEEVINYASH 440
                  + L + I     
Sbjct: 554 GQEDSNQLELTKFIELFKK 572


>gi|325263251|ref|ZP_08129986.1| threonine--tRNA ligase [Clostridium sp. D5]
 gi|324031644|gb|EGB92924.1| threonine--tRNA ligase [Clostridium sp. D5]
          Length = 653

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/449 (15%), Positives = 148/449 (32%), Gaps = 38/449 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD      ++ L T  +    +G+   +P G K +  +   I +E++
Sbjct: 226 LNEYLQYLEEVKKRDHNKLGREMELFTT-VDVIGQGLPLLMPKGAKIIQTLQRWIEDEED 284

Query: 63  RT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFR 119
              G I    P +  +DL+  SG +D Y   M      + N +     P        +++
Sbjct: 285 NNWGYIRTKTPLMAKSDLYQISGHWDHYKDGMFVLGDEETNKEVFALRPMTCPFQYYVYK 344

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  KSYR+LP  + +    FR+E      G+ R R+F + + +      +  +  +    
Sbjct: 345 ASQKSYRDLPLRYSETSTLFRNEDSGEMHGLTRVRQFTISEGHLIVRPDQMVEE-FKGCL 403

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NT 237
               +    LGL+             D     +   D   T+ +     +          
Sbjct: 404 ALAKKCLTTLGLQ-------------DDVTYHLSKWDPDNTEKYIGDAEVWNETEGHIRN 450

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
              ++           A Y    D++ + ++    +   +     +      F       
Sbjct: 451 ILTELEVPFVEDAGEAAFYGPKVDINAKNVY---GKEDTMITIQWDALLAEQFD------ 501

Query: 298 MSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               +   +G       +    IG      A +    +    ++P  + P ++ ++ +  
Sbjct: 502 --MYYIDQNGDKVRPYIIHRTSIGCYERTLAWLI---EKYAGMFPTWLCPEQVRILPVSD 556

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 D  +K+   +         D   E+IG +   A L   P  +IVG K  ++  V
Sbjct: 557 K---YLDYADKVENEMKANNILCTVDSRSEKIGYKIREARLAKIPYMLIVGEKEEAEGTV 613

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ R  G      L+  I+         
Sbjct: 614 SVRSRFLGDEGAKGLQGFIDDVCREIRTK 642


>gi|317179366|dbj|BAJ57154.1| prolyl-tRNA synthetase [Helicobacter pylori F30]
          Length = 577

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 134/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW  SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWERSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +IVG + +   + E   R    ++ +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLVLIVGKQTLESKEFECIKRANLEKQVLKDTELEEK 569

Query: 438 ASHRFSN 444
                 +
Sbjct: 570 ILEMLES 576


>gi|189091896|ref|XP_001929781.1| hypothetical protein [Podospora anserina S mat+]
 gi|27803058|emb|CAD60761.1| unnamed protein product [Podospora anserina]
 gi|188219301|emb|CAP49281.1| unnamed protein product [Podospora anserina S mat+]
          Length = 783

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 81/477 (16%), Positives = 153/477 (32%), Gaps = 65/477 (13%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD  +   +  L      + S G   WLP G +  + +   I+EE    G  E+
Sbjct: 311 LEEAAKRDHRLIGKQQELF--YFEECSPGSAMWLPHGMRIHNAIMDYIKEEYWARGYDEV 368

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + +  LW +SG    Y ++M  L D + +     P +      +FR   +S++ LP
Sbjct: 369 MTPNMFNVSLWEQSGHLAHYKEDMF-LLDVDKEQFGLKPMNCPAHAMMFRHRERSHKELP 427

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                  +  R+E      G+ R R F   DA+ F    +  K     +F    + +  L
Sbjct: 428 LRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCR-EDQIKEEVADLFDFMRKFYGIL 486

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           GL    ++  + P       E    A++           +   +        D      +
Sbjct: 487 GLTFK-LKLSTRPEKFLGEIETWDRAES----------RLKEALDEFAASDKDGGVSWEL 535

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS------------- 295
                A Y    D+    + D L    + +   ++      F  +Y              
Sbjct: 536 NPGDGAFYGPKIDI---AVLDCLNRPWQCATIQLDFQQPQNFSLEYQTGEAVHKGETKAA 592

Query: 296 -----------------------LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                                   P+      + G    V +     G++    A++   
Sbjct: 593 VEEPAPPAPEAEAEKDKDGKEKKKPLLIKKALSPGCARPVMIHRAMAGSIERFTAILA-- 650

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            +     WP  ++P ++ +I +        D  +++ A L K       D  G  +  + 
Sbjct: 651 -EHFAGKWPFWMSPRQVIVIPVGMG---FLDYAKEVAALLKKEKFYADVDSSGNTLQKKI 706

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNN 445
               L  +    +VG   + + KV I++R     +       L+E I       SN 
Sbjct: 707 RNGQLAQYNFVFVVGDDEMRNRKVNIRYRDDTSTQARDVPFDLDEAIQKLRQLKSNR 763


>gi|297379463|gb|ADI34350.1| prolyl-tRNA synthetase [Helicobacter pylori v225d]
          Length = 577

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++ ++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSTILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +IVG + +   + E   R    ++ +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEK 569

Query: 438 ASHRFSN 444
                 +
Sbjct: 570 ILEMLES 576


>gi|108562666|ref|YP_626982.1| prolyl-tRNA synthetase [Helicobacter pylori HPAG1]
 gi|123373844|sp|Q1CUR4|SYP_HELPH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|107836439|gb|ABF84308.1| prolyl-tRNA synthetase [Helicobacter pylori HPAG1]
          Length = 577

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 136/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I + LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILNDLGLDFRIVEADSGAIGGSKSKEFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLRASFLDKNGKEQFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +I+G + + + + E   R    ++ +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIIGKQTLENKEFECIKRANLEKQTIKDIELEEK 569

Query: 438 ASHRFSN 444
                ++
Sbjct: 570 ILEMLAS 576


>gi|307636931|gb|ADN79381.1| prolyl tRNA synthetase [Helicobacter pylori 908]
 gi|325995521|gb|ADZ50926.1| Prolyl-tRNA synthetase [Helicobacter pylori 2018]
 gi|325997119|gb|ADZ49327.1| Prolyl-tRNA synthetase [Helicobacter pylori 2017]
          Length = 577

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 99/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDTESLDKEFLNTQNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   ++  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQNC-DYAANIE 234



 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDRCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLLQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD   + G++    +L+G  L +I+G + +   + E   R    ++ +   E+   
Sbjct: 510 DVLLDDRDARFGAKMRDFELIGERLALIIGKQTLESKEFECIKRANLEKQTIKDIELEEK 569

Query: 438 ASHRFSN 444
                ++
Sbjct: 570 ILEMLAS 576


>gi|329117585|ref|ZP_08246302.1| proline--tRNA ligase [Streptococcus parauberis NCFD 2020]
 gi|326907990|gb|EGE54904.1| proline--tRNA ligase [Streptococcus parauberis NCFD 2020]
          Length = 618

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 101/242 (41%), Positives = 146/242 (60%), Gaps = 2/242 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG ++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FDKIGAVEMLSPALLTADLWRESGRYETYGDDLYKLKNRDQSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHPDYEDLDIAYEDYRRA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL    +  + G +GG  S EF+ +    E         +D  IPS +   +
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITP--ERTDLDRWLVLDKSIPSVDEIPE 238

Query: 241 DI 242
           D+
Sbjct: 239 DV 240



 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 66/199 (33%), Positives = 101/199 (50%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+   V    RGIE+GHIF  GT+YS  + AT    +G+   +
Sbjct: 414 FQAEYVDIREVKEGEISPDGHGVLQFARGIEIGHIFKLGTRYSDSLGATILDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVSKTPKGDYRFAWGINFPKELAPFDVHLITVNTKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             ++   +I   L   G +V  DD  E++GS+F+ +DL+G P++V VG K  S+  VEIK
Sbjct: 534 EAQELTNRIETDLMAKGYEVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-ASEGIVEIK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + +G   +++ E +    
Sbjct: 593 IKSSGASIEVNAENLTETL 611


>gi|222823773|ref|YP_002575347.1| prolyl-tRNA synthetase [Campylobacter lari RM2100]
 gi|254782892|sp|B9KGB1|SYP_CAMLR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|222538995|gb|ACM64096.1| prolyl-tRNA synthetase [Campylobacter lari RM2100]
          Length = 565

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 110/273 (40%), Positives = 157/273 (57%), Gaps = 4/273 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK++    +ENP+DA + SH  +++   I Q   G+Y++LPLG++ LD +  II+EE
Sbjct: 1   MKFSKFYAISTKENPKDATLPSHIFLVKGAFIEQIGSGLYNFLPLGKRVLDKIKNIIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+E+++     A+LW ESGR++ +GKE+LR  DR +   + GPTHEE M  + R+
Sbjct: 61  MDKAGALEVNLSFNTPAELWKESGRFNVFGKELLRFKDRKENDFVLGPTHEEAMVALIRN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP   YQI LKFRDE RPRFG++R REFLMKD YSF  +       +N M  +
Sbjct: 121 KITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKDGYSFHASEADLDKEFNLMHET 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y +I  RLGL    + A+SG IGG  S EF+VLA  GE  +   +   D+    E     
Sbjct: 181 YSKILTRLGLDFRAVEADSGAIGGSGSKEFMVLAKNGEDDILLCEHC-DYAANIEAA--- 236

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                    E+  A +A      N K  + L E
Sbjct: 237 KRTKKTCTDERPEADFATQFHTPNVKTIEELAE 269



 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 64/184 (34%), Positives = 100/184 (54%), Gaps = 5/184 (2%)

Query: 261 DVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   K  D  P+   K   ++GIEVGHIF  G KYS  M+A++   +GK  +  MG YG
Sbjct: 385 DLAAVKEHDLCPKCQHKLKQSKGIEVGHIFKLGKKYSQAMNASYLDENGKAQFFTMGCYG 444

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G  R+VA  IE+SHD KG IW  ++APF + +I     D    +  E+IY         
Sbjct: 445 MGVSRLVAVAIEASHDEKGCIWNKTLAPFVLDIIVSNIKDIKAMEFAEQIYTHFKDKEI- 503

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD  E+ G +    +L+GFP  +++G K + + +VE+ HR T  ++ +  +EVI++ 
Sbjct: 504 -LFDDRNERFGVKINDFELMGFPYALVIG-KSLENDEVELIHRNTLEKQVLKTQEVISHL 561

Query: 439 SHRF 442
               
Sbjct: 562 EKIL 565


>gi|315586236|gb|ADU40617.1| proline--tRNA ligase [Helicobacter pylori 35A]
          Length = 577

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +I+G + +   + E   R    ++ +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIIGKQTLESKEFECIKRANLEKQTLKDTELEEK 569

Query: 438 ASHRFSN 444
                 +
Sbjct: 570 ILEMLES 576


>gi|160876899|ref|YP_001556215.1| tRNA synthetase class II [Shewanella baltica OS195]
 gi|160862421|gb|ABX50955.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS195]
 gi|315269103|gb|ADT95956.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS678]
          Length = 398

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/428 (15%), Positives = 136/428 (31%), Gaps = 40/428 (9%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
               + +L L        + G+  W P G     ++   +R    R G  E++ P     
Sbjct: 4   HREIAEQLDLF--HSEPQAPGMIFWHPNGWALFRDIQEHMRRVYRRNGFEEVNTPVFMKK 61

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK-AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           +LW  SG  D + + M     + +    +  P        +F+  + S+R+LP   ++  
Sbjct: 62  ELWQTSGHMDMFAENMFFGGGKENMGEYVLKPMSCPAHILLFKRGVHSHRDLPLRLFEFG 121

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           L  R+E      G +R+R+F   DA+ F      ++           +++   G  ++ +
Sbjct: 122 LVHRNESSGSLNGCLRARQFTQDDAHVFCC-WSQAEEEICGFLQRAKQVYGDYGYHNLDV 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           +  + P     S E    A        C  +  D    +                   A 
Sbjct: 181 KISTKPEKALGSDEQWCRAQK-LLDSACQIEGFDAEYQA----------------GEGAF 223

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QM 314
           Y    ++    L DS+    +      +    F    ++       +    G+      M
Sbjct: 224 YGPKIEL---SLTDSMGRRWQCGTIQFD----FNLPERFD----VQYTNEQGEFERPVIM 272

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++     ++     G    W           + I + ++       ++ A    
Sbjct: 273 HQAMYGSIERWLGILLEVSQGNLPDW------LHPVPVAIASVNESNSQFVRQLAALCLA 326

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V  D     +  +         P  + VG K  ++  V +K R  G+   + L E+
Sbjct: 327 RDMRVLVDISQNSVARKMKRFHKQKVPYILTVGDKEEAEKCVSVKCRKDGVMTHIPLAEL 386

Query: 435 INYASHRF 442
            +Y + + 
Sbjct: 387 ADYLADKL 394


>gi|317180044|dbj|BAJ57830.1| prolyl-tRNA synthetase [Helicobacter pylori F32]
          Length = 577

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +IVG + +   + E   R    ++ +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEK 569

Query: 438 ASHRFSN 444
                 +
Sbjct: 570 ILEMLES 576


>gi|149017957|ref|ZP_01834416.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|147931521|gb|EDK82499.1| prolyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
          Length = 617

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 106/257 (41%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E   DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E
Sbjct: 1   MKQSKMPIPTLREMSSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  PTL SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPTLLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSEN 236
           Y RIF R GL    +  + G +GG  S EF+       D     V          IP+E 
Sbjct: 181 YERIFTRSGLDFKAIIGDGGAMGGKDSQEFMAITSARTDLDRWVVLDKSVASFDEIPAEV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L  IV    
Sbjct: 241 QEEIKAELLKWIVSGED 257



 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 534 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + V+        + +
Sbjct: 593 IKATGDTIEVHADNVLETL--EILSKK 617


>gi|217033470|ref|ZP_03438900.1| hypothetical protein HP9810_1g84 [Helicobacter pylori 98-10]
 gi|216944175|gb|EEC23603.1| hypothetical protein HP9810_1g84 [Helicobacter pylori 98-10]
          Length = 577

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 99/235 (42%), Positives = 134/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ L    YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLSVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSKEFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P    +    + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDHCPNCQGELKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +I+G + +   + E   R    ++ +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIIGKQTLESKEFECIKRANLEKQTLKDTELEEK 569

Query: 438 ASHRFSN 444
                 +
Sbjct: 570 ILEMLES 576


>gi|317177054|dbj|BAJ54843.1| prolyl-tRNA synthetase [Helicobacter pylori F16]
          Length = 577

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 101/235 (42%), Positives = 136/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +  M  +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNMQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P    +    + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDHCPNCQGELKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLHQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +IVG + +   + E   R    ++ +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEK 569

Query: 438 ASHRFSN 444
                 +
Sbjct: 570 ILEMLKS 576


>gi|317181547|dbj|BAJ59331.1| prolyl-tRNA synthetase [Helicobacter pylori F57]
          Length = 577

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 136/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     ++    +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDTESLDKEFSNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P    +    + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDRCPNCQGELKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +IVG + +   + E   R    ++ +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEK 569

Query: 438 ASHRFSN 444
                 +
Sbjct: 570 ILEMLES 576


>gi|332673080|gb|AEE69897.1| proline--tRNA ligase [Helicobacter pylori 83]
          Length = 577

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILSDLGLDFRVVEADSGAIGGSKSREFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDRCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD     G++    +L+G  L +IVG + +   + E   R    ++ +   E+   
Sbjct: 510 DALLDDREAHFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEK 569

Query: 438 ASHRFSN 444
                 +
Sbjct: 570 ILEMLES 576


>gi|31544379|ref|NP_852957.1| threonyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|81572846|sp|Q7NBT5|SYT_MYCGA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|31541223|gb|AAP56525.1| threonyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|284930421|gb|ADC30360.1| threonyl-tRNA synthetase [Mycoplasma gallisepticum str. R(high)]
          Length = 573

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 139/439 (31%), Gaps = 34/439 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L I++E   RD    +  L L T        G+  WLP GQ     +   +   Q + G
Sbjct: 163 YLEIIEEQKQRDHRRINKILELFT-FNQLAGPGMPIWLPNGQIVRQLIGDYVHSVQKKFG 221

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKS 124
            + ++ P L + DL+ +SG Y+ Y K+M       D   M+  P        ++ +  ++
Sbjct: 222 FMAVNTPILGNVDLYKKSGHYNHYAKDMFPELALLDGDKMMLRPMTCPHHCLVYLNKPRN 281

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           Y +LP    +  L  R E      G+ R R   + D + F    +         +     
Sbjct: 282 YYDLPMRLSEDALLHRYEASGGLTGLERVRAMTLLDNHIFCRLDQIKTE-ILNAYQVIKE 340

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +     LK   +           S                ++               D+ 
Sbjct: 341 VIGTFNLKFHRIDLSLHDPNDKQSF-------------IDNEQMWARSENQLEDALKDLG 387

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +      A Y    D    ++  +L +   VS   ++    F   ++        +K
Sbjct: 388 LEYTKQVGEAAFYGPKIDF---QVKTALNKIITVSTIQLD----FSLPSE--EKFDIKYK 438

Query: 304 GADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             D      V +    IG      A +     G   +W           + I  ++ V  
Sbjct: 439 TKDNTYEQGVIIHLGIIGTYERFVATLLEQTKGALDLWLA-----PKQAVIIPVNNSVHL 493

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHR 421
           + C ++  +L      V  D   E++  +     +   P+Q+I+G   + +   +  +  
Sbjct: 494 EGCNQLLEKLLARDLRVTVDSRDERLNKKIRDHQVNKIPVQIIIGDNELKNPDLITYRLY 553

Query: 422 LTGIREDMSLEEVINYASH 440
                  + L + I     
Sbjct: 554 GQEDSNQLELTKFIELFKK 572


>gi|162139703|ref|YP_819759.2| prolyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
 gi|148887037|sp|Q03MK9|SYP_STRTD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 620

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 102/242 (42%), Positives = 149/242 (61%), Gaps = 2/242 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTVLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDAYSFHQNYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   +  + G +GG  S EF+ +    E         +D  I S +   +
Sbjct: 181 YEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAVTP--ERTDLNRWVVLDKSIASLDEIPE 238

Query: 241 DI 242
           D+
Sbjct: 239 DV 240



 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FKAEYVDIRKVKEGEISPDGQGVLQFARGIEIGHIFKLGTRYSESMGANVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +AP+ + LI +   D+
Sbjct: 474 IMGCYGIGVSRILSAVIEQHARLFVNKTPKGQYRYAWGINFPKELAPYDVHLITVNTKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +++ A L+  G DV  DD  E++GS+F+ +DL+G P++V VG K  S+  VE+K
Sbjct: 534 EANALTDRLEAALAAEGYDVLIDDRNERVGSKFSDSDLIGLPIRVTVGKK-ASEGVVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   +++ + +I   +
Sbjct: 593 IKATGDTIEVNADNLIETLA 612


>gi|225867815|ref|YP_002743763.1| prolyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
 gi|259511619|sp|C0MFA1|SYP_STRS7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225701091|emb|CAW97925.1| prolyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
          Length = 618

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 110/325 (33%), Positives = 168/325 (51%), Gaps = 19/325 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLAHRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF  + +    +Y+    +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHQSYDDLDVTYDAYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGETQVFCSKDFMDFPIPS 234
           Y  IF R GL    +  + G +GG  S EF+ +       D             D P   
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITPDRTNLDRWLVLDKSIPSLADIPEEV 240

Query: 235 ENTDFDDIISLNSIVEQWTAP-----YAATSDVHNEKLF--------DSLPENKRVSARG 281
                 ++ S     E   A      YAA  ++   +          D L E +  + + 
Sbjct: 241 LEEIKAELASWLVSGEDTIAYSSESSYAANLEMATSEYKPSSKVTALDDLVEIETPNCKT 300

Query: 282 IEVGHIFYFGTKYSLPMSATFKGAD 306
           I+    F   T++ +  +  F    
Sbjct: 301 IDEVAAFLDITEHQVIKTLLFMADH 325



 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/199 (34%), Positives = 105/199 (52%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A  +D+   K  ++ P+   V    RGIE+GHIF  GT+YS  M+A     +G+   +
Sbjct: 414 FQAEYADIREVKEGETSPDGHGVLQFARGIEIGHIFKLGTRYSDSMAANILDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVSKTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D  EK+ A L   G DV  DD  E++GS+F+ +DL+G P++V +G K  ++  VEIK
Sbjct: 534 EAQDLTEKVEASLMAKGYDVLTDDRNERVGSKFSDSDLIGLPIRVTIGKK-AAEGIVEIK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   ++  + +I   
Sbjct: 593 IKATGDSIEVHADSLIETL 611


>gi|188527045|ref|YP_001909732.1| prolyl-tRNA synthetase [Helicobacter pylori Shi470]
 gi|226701297|sp|B2US70|SYP_HELPS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|188143285|gb|ACD47702.1| prolyl-tRNA synthetase [Helicobacter pylori Shi470]
          Length = 577

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 91/187 (48%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P+   +    + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDHCPDCQGELKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +IVG + +   + E   R    ++ +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEK 569

Query: 438 ASHRFSN 444
                 +
Sbjct: 570 ILEMLKS 576


>gi|298736816|ref|YP_003729346.1| prolyl-tRNA synthetase [Helicobacter pylori B8]
 gi|298356010|emb|CBI66882.1| prolyl-tRNA synthetase [Helicobacter pylori B8]
          Length = 577

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 99/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR +   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKNNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSKEFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +IVG + + + + E   R    ++ +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIVGKQTLENKEFECVKRANLEKQTIKDIELEEK 569

Query: 438 ASHRFSN 444
                ++
Sbjct: 570 ILEILAS 576


>gi|288904427|ref|YP_003429648.1| prolyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|306830460|ref|ZP_07463630.1| proline--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977424|ref|YP_004287140.1| prolyl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288731152|emb|CBI12700.1| prolyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|304427485|gb|EFM30587.1| proline--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177352|emb|CBZ47396.1| proS [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 618

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 97/212 (45%), Positives = 137/212 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S+  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++   AI+REE
Sbjct: 1   MKQSQMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKAIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLNADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTSLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    EG   +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHADYEGLDTTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y  IF R GL    +  + G +GG  S EF+ 
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMA 212



 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 68/199 (34%), Positives = 103/199 (51%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+ K V    RGIE+GHIF  GT+YS  M AT    +G+   +
Sbjct: 414 FEAEYVDIREVKEGEISPDGKGVLKFARGIEIGHIFKLGTRYSESMGATILDQNGRAIPI 473

Query: 313 QMGSYGIGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + +I +   D+
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVSKTPKGAYRFAWGINFPKELAPFDVHVITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +    K+ A L   G +V  DD  E++GS+F+ +DL+G P++V VG K  +D  VE+K
Sbjct: 534 EAQALTAKVEAELVAKGYEVLVDDRNERVGSKFSDSDLIGLPIRVTVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   +++ E +I   
Sbjct: 593 IKATGDTIEVNAENLIETL 611


>gi|218513336|ref|ZP_03510176.1| prolyl-tRNA synthetase [Rhizobium etli 8C-3]
          Length = 215

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 120/212 (56%), Positives = 160/212 (75%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
           F+DF IP E+TDFD +  L +I ++WT+ YAATS++H+E  F+++PE +R+SARGIE GH
Sbjct: 2   FVDFDIPGESTDFDSVEGLQAIFDKWTSLYAATSEMHDEAAFNAVPEGERLSARGIEAGH 61

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           IFYFGTKYS PM A  +G DGK+H+V MGSYGIG  R+V A+IE+SHD  GIIWP SVAP
Sbjct: 62  IFYFGTKYSEPMGAKVQGPDGKEHFVHMGSYGIGPTRLVPAIIEASHDDNGIIWPASVAP 121

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           F + +IN+KA DQ C D CE IYA L+K G DV +DD  ++ G++FA ADL+G P+Q+I 
Sbjct: 122 FDVVVINMKAGDQACDDTCELIYAALTKAGKDVLYDDTDDRAGTKFATADLIGVPVQIIA 181

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G + V++ +VE+K R TG RE M++E  IN  
Sbjct: 182 GPRAVANGEVEVKDRKTGARETMTIEAAINRF 213


>gi|261749266|ref|YP_003256951.1| threonyl-tRNA synthetase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497358|gb|ACX83808.1| threonyl-tRNA synthetase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 408

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 75/429 (17%), Positives = 143/429 (33%), Gaps = 36/429 (8%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      KL        +   G+  WLP G     N+   + + Q ++G   +  P +  
Sbjct: 10  DHRKIGKKLKFFI-FSDRVGTGLPLWLPRGTIFRRNLEEFLTDIQKKSGYEMIMTPHIGH 68

Query: 77  ADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             L+V SG +D YGK+  +      +++  +  P +     +++RS   SYR+LP  F +
Sbjct: 69  KKLYVRSGHWDKYGKDSFKPIQTPHSEEEFLLKPMNCPHHCEVYRSQEWSYRDLPKRFAE 128

Query: 135 IQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
               +R E      G+ R R F   DA+ F  T +     + K+      +F RLG    
Sbjct: 129 FGTVYRYEQSGELHGLTRVRCFTQDDAHIFC-TYDQLLEEFKKVINLVFYVFRRLGFLEY 187

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +R                           S    +    +      +     S+     
Sbjct: 188 TIRVSLRD-------------PKKIHNYIGSDKNWEMAENAIIQAVKEEKLDASLHYGEA 234

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV- 312
           A Y    D     + DSL  N ++    ++                  +KG + + H   
Sbjct: 235 AFYGPKLDFL---IKDSLDRNWQLGTIQVDYNLP--------ERFDLYYKGKNNERHRPV 283

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    +G++  + A++     G   +W         +   I           +KI   +
Sbjct: 284 MIHRAPLGSLERLIAILIEHTKGNLPLW------LVPNQAVILPISDKYIIYAKKILNLM 337

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                 VF D+  E+I  +   ++    P  +I+G K   +  + ++    G     ++ 
Sbjct: 338 LNHNIRVFLDERNEKIDKKIRDSEENKIPYMIILGEKEEKNKMISLRRHGLGHIGIFTIS 397

Query: 433 EVINYASHR 441
             I+     
Sbjct: 398 NGIDAIFKE 406


>gi|308061592|gb|ADO03480.1| prolyl-tRNA synthetase [Helicobacter pylori Cuz20]
          Length = 577

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P+   +    + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDHCPDCQGELKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +IVG + +   + E   R    +  +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKRTLKDTELEEK 569

Query: 438 ASHRFSN 444
                 +
Sbjct: 570 ILEMLKS 576


>gi|150865919|ref|XP_001385328.2| threonyl-tRNA synthetase [Scheffersomyces stipitis CBS 6054]
 gi|149387175|gb|ABN67299.2| threonyl-tRNA synthetase [Scheffersomyces stipitis CBS 6054]
          Length = 730

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 147/442 (33%), Gaps = 40/442 (9%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +  L     ++ S G   WLP G +  + +   IR+E    G  E+  
Sbjct: 316 EAAERDHRRIGKEQELF--FFNEMSPGSAFWLPHGTRIYNALVQFIRDEYQVRGFDEVIT 373

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + +  LW  SG + +Y + M    D   +     P +      IF+S  +SYR LP+ 
Sbjct: 374 PNMFNHKLWETSGHWGNYKENMFTF-DVEKETFGLKPMNCPGHCVIFKSRERSYRELPWR 432

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                +  R+E      G+ R R F   DA+ F  T +         F    +++   G 
Sbjct: 433 VADFGVLHRNEFSGALSGLTRVRRFQQDDAHIFCTTDQIGSE-IKGAFDFLNKVYGTFGF 491

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           +       + P       E    A+         K   +F                 +  
Sbjct: 492 QFKM-ELSTRPEKYVGEIETWNSAEK-----MLEKSLNEFKGEGG----------WELNP 535

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKD 309
              A Y    D+    + D+L    + +   ++    F    ++ L   A          
Sbjct: 536 GDGAFYGPKIDIM---ISDALNRWFQCATIQLD----FQLPNRFELEYKAETNDKGSSTS 588

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + A++    +     WP  ++P +I ++ +        +  +K+ 
Sbjct: 589 RPVMIHRAILGSVERMTAILI---EHYKGKWPFWLSPRQILIVPVGPK---YYEYGQKLQ 642

Query: 370 ARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TG 424
             L+         D  G  +  +     L  +    IVG +    + V +++R      G
Sbjct: 643 KELNDKYSFYADVDVSGNTLPKKIRTGQLYKYNFIFIVGDEEEQSASVNVRNRDIPEEQG 702

Query: 425 IREDMSLEEVINYASHRFSNNR 446
               +  +EV+          R
Sbjct: 703 KNAMVKFDEVVKQLVSLRDEKR 724


>gi|302024530|ref|ZP_07249741.1| prolyl-tRNA synthetase [Streptococcus suis 05HAS68]
          Length = 620

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 102/257 (39%), Positives = 142/257 (55%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA + SH LMLR G + Q S GIYS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMIIPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLPLANRVIEKAKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++  AIE   P L SAD+W ESGRY++YG ++ +L +R     I GPTHEE +T + R 
Sbjct: 61  FDKIDAIEFLAPALLSADIWRESGRYETYGDDLYKLKNREGSDFILGPTHEETVTLLARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF  + E    +Y+    +
Sbjct: 121 AVQSYKQLPLNIYQIQSKYRDEKRPRNGLLRGREFIMKDGYSFHASYESLDQTYDDYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV----LADTGETQVFCSKDFMDFPIPSEN 236
           Y  IF R GL+   +  + G +GG  S EF+       D     V          IP + 
Sbjct: 181 YEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAITPDRTDLDRWVVLDKSVASFEEIPEDV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L   V    
Sbjct: 241 LEAIKEELLAWSVSGED 257



 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 16/199 (8%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                D+   K  +  P+   V    RGIE+GHIF  GT+YS  M+A     +G+   + 
Sbjct: 416 VTEYVDIREVKEGEPSPDGHGVLNFARGIEIGHIFKLGTRYSDSMNANILDENGRSMPII 475

Query: 314 MGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQV 360
           MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+ 
Sbjct: 476 MGCYGIGVSRLLSAVLEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEA 535

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  + I A L   G +V  DD  E++G +F+ +DL+G P++V VG K  +D  VE+K 
Sbjct: 536 AMELTQSIEASLVGAGYEVLTDDRNERVGVKFSDSDLIGLPIRVTVGKK-AADGIVEVKI 594

Query: 421 RLTGIREDMSLEEVINYAS 439
           + TG   ++ +++++    
Sbjct: 595 KGTGDTVEVHVDQLLETLQ 613


>gi|158291808|ref|XP_313346.3| AGAP003589-PA [Anopheles gambiae str. PEST]
 gi|157017465|gb|EAA08954.3| AGAP003589-PA [Anopheles gambiae str. PEST]
          Length = 461

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 146/467 (31%), Positives = 226/467 (48%), Gaps = 49/467 (10%)

Query: 2   RRSKYFLPILQENPRDAEIASH-------KLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           R SK F P L   P++A I S        +LML  G+I Q   G +  LPL Q++L    
Sbjct: 3   RVSKLFQPALI-IPKNATIKSQDITSKSQRLMLEQGLIRQAGNGTFYLLPLLQRSLQKAV 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG----KEMLRLADRNDKAMIYGPTH 110
            +I       GA +M +P L SA+LW +SGR          E+L+  DR+ K  I GPTH
Sbjct: 62  DLIDRHMEAVGAQKMVLPLLTSAELWKKSGRLSVTEAGTPTELLQTTDRHGKVQILGPTH 121

Query: 111 EEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
           EE +T  +      +YR  P   YQI  KFRDE++PRFG+MR++EFLMKD Y+FD+   G
Sbjct: 122 EESITSLLAAIAPVTYRQFPLRLYQISTKFRDEMKPRFGLMRAKEFLMKDLYTFDVDRAG 181

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
            + +Y+ +  +Y R+F  +G+  + +  + G +GG LSHE+   ++ GE ++        
Sbjct: 182 CQETYDSVNEAYGRLFREIGVPFVKVAGDCGTMGGSLSHEYHFPSEVGEDELIRCTRC-- 239

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHI 287
                          +++  E + A           +   S         R  GIEV H 
Sbjct: 240 --------------GMHTNAELFPA---------LSERCKSCETGSDTFERQAGIEVAHA 276

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F    +Y+  + AT   A+GK   +QMG YGIG  R++AA IE     K I WP ++AP+
Sbjct: 277 FILEDRYTKALGATCLAANGKPVPLQMGCYGIGVTRLLAASIEVLSSEKEIRWPVALAPY 336

Query: 348 KISLINIKAHDQVCRDA---CEKIYARLSK----VGCDVFWDDMGE-QIGSQFAVADLLG 399
           ++ +I  KA  +    A     K++  L       G DV  DD  +  IG +      +G
Sbjct: 337 RVCIITPKAGSKEEAQATPWVGKLHDDLQSLANCAG-DVIVDDRTQLTIGKRLLDTRKMG 395

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +P+ V+VG+K  S+ K+E+     G    +   + ++  +   +  +
Sbjct: 396 YPVIVVVGAKAASEKKLELHDVAAGTEVSLPYSDTLSAVAEILTAAK 442


>gi|223933900|ref|ZP_03625863.1| prolyl-tRNA synthetase [Streptococcus suis 89/1591]
 gi|223897426|gb|EEF63824.1| prolyl-tRNA synthetase [Streptococcus suis 89/1591]
          Length = 620

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 102/257 (39%), Positives = 142/257 (55%), Gaps = 4/257 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA + SH LMLR G + Q S GIYS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMIIPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLPLANRVIEKAKNIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++  AIE   P L SAD+W ESGRY++YG ++ +L +R     I GPTHEE +T + R 
Sbjct: 61  FDKIDAIEFLAPALLSADIWRESGRYETYGDDLYKLKNREGSDFILGPTHEETVTLLARD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF  + E    +Y+    +
Sbjct: 121 AVQSYKQLPLNIYQIQSKYRDEKRPRNGLLRGREFIMKDGYSFHASYESLDQTYDDYKAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV----LADTGETQVFCSKDFMDFPIPSEN 236
           Y  IF R GL+   +  + G +GG  S EF+       D     V          IP + 
Sbjct: 181 YEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAITPDRTDLDRWVVLDKSVASFEEIPEDV 240

Query: 237 TDFDDIISLNSIVEQWT 253
            +      L   V    
Sbjct: 241 LEAIKEELLAWSVSGED 257



 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 16/199 (8%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                D+   K  +  P+   V    RGIE+GHIF  GT+YS  M+A     +G+   + 
Sbjct: 416 VTEYVDIREVKEGEPSPDGHGVLNFARGIEIGHIFKLGTRYSDSMNANILDENGRSMPII 475

Query: 314 MGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQV 360
           MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+ 
Sbjct: 476 MGCYGIGVSRLLSAVLEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEA 535

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  + I A L   G +V  DD  E++G +F+ +DL+G P++V VG K  +D  VE+K 
Sbjct: 536 AMELTQSIEASLVGAGYEVLTDDRNERVGVKFSDSDLIGLPIRVTVGKK-AADGIVEVKI 594

Query: 421 RLTGIREDMSLEEVINYAS 439
           + TG   ++ +++++    
Sbjct: 595 KGTGDTVEVHVDQLLETLQ 613


>gi|210134438|ref|YP_002300877.1| prolyl-tRNA synthetase [Helicobacter pylori P12]
 gi|226701295|sp|B6JKG9|SYP_HELP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|210132406|gb|ACJ07397.1| prolyl-tRNA synthetase [Helicobacter pylori P12]
          Length = 577

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 99/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   ++  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQNC-DYAANIE 234



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 91/187 (48%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P    +    + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDRCPNCQGELKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLLQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +IVG + +   + E   R    ++ +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTIKDIELEEK 569

Query: 438 ASHRFSN 444
                ++
Sbjct: 570 ILEMLAS 576


>gi|116515019|ref|YP_802648.1| hypothetical protein BCc_078 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256873|gb|ABJ90555.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 642

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/431 (15%), Positives = 126/431 (29%), Gaps = 42/431 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D    S   +L    I + S G+  W   G      +   +R +  +   IE+  P +  
Sbjct: 241 DHRKISK--LLSLYHIQKESPGMIFWHKNGYIIFKQLENFLRNKLFQNNYIEVKSPIIID 298

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             LW +SG +  Y + +       +      P +      IF+  +KSY++LP    +  
Sbjct: 299 KSLWKKSGHWKHYNQSIFT-TKSENNQYCIKPMNCPAHVQIFKYGLKSYKDLPIRMAEFG 357

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R E      G+ R R F   DA+ F    +      N        ++H  G K I +
Sbjct: 358 SCHRQETSGSLHGLFRVRGFTQDDAHIFCTKKQIKSEL-NHCIRLLFDLYHTFGFKKIFI 416

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           +  + P                        D  D                        A 
Sbjct: 417 KFSTRPENR-----------------IGKDDIWDQAEKDLELVLKKNNLFFEYQIGEGAF 459

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y    ++    L D+L    +     ++    FY     S  + A +   +       + 
Sbjct: 460 YGPKIEI---ALEDNLKRIWQCGTIQLD----FYL----SKQLDAFYINKNNIKKNPIII 508

Query: 316 SYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
                    R +  +IE  +    I                    +      + I  +  
Sbjct: 509 HRAFLGSIERFIGILIEEYNGKLPIWLCPIQVAIINV-------SEKHIFFIKNIEKKFL 561

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           K       D     I  +         P  +I+G K V ++ + I++R   I+   ++  
Sbjct: 562 KNNIRFISDISNNSISFKIRFYLEQKVPYIIIIGDKEVKNNYITIRNRFNNIQYKQNINF 621

Query: 434 VINYASHRFSN 444
            I    +  ++
Sbjct: 622 FIKKIINNVNS 632


>gi|308182413|ref|YP_003926540.1| prolyl-tRNA synthetase [Helicobacter pylori PeCan4]
 gi|308064598|gb|ADO06490.1| prolyl-tRNA synthetase [Helicobacter pylori PeCan4]
          Length = 577

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 99/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   ++  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQNC-DYAANIE 234



 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDCCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLRQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +IVG + +   + E   R    ++ +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTIKDIELEEK 569

Query: 438 ASHRFSN 444
                 +
Sbjct: 570 ILEMLES 576


>gi|308189939|ref|YP_003922870.1| threonine--tRNA ligase [Mycoplasma fermentans JER]
 gi|319777220|ref|YP_004136871.1| threonyl-tRNA synthetase [Mycoplasma fermentans M64]
 gi|238809889|dbj|BAH69679.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624681|gb|ADN68986.1| threonine--tRNA ligase [Mycoplasma fermentans JER]
 gi|318038295|gb|ADV34494.1| Threonyl-tRNA synthetase [Mycoplasma fermentans M64]
          Length = 582

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 140/443 (31%), Gaps = 36/443 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L IL +   RD      ++ +    +H    +G   WL  G    + +  ++ +   + 
Sbjct: 171 YLAILADRKERDHRKLGKEMKIFA--MHPLCGQGFPIWLEDGMYIHNEIKNLVLKMDRKY 228

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P   S DL+  SG    Y  +M       ++ +I  P         +    +S
Sbjct: 229 GFTEVLTPHFGSEDLYKTSGHLAHYKDDMFAPLVIENERLIPRPMTCPHHIVCYNLEKRS 288

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP  + +    +R E       +     ++       +  +  +     M+      
Sbjct: 289 YRDLPIRYSEQSQLYRYEKSGALTGLERVRGMLLTEGHLFVREDQIEQEIKSMYQLIEET 348

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD-FMDFPIPSENTDFDDII 243
                +    +                   D  + + + + +   +          DD+ 
Sbjct: 349 LKIFNIDISYISLSLR--------------DKNDKEKYFNDNKMWNSAEKMLKKALDDMG 394

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              + V    A Y    D+   ++  +L     VS   ++                 T+ 
Sbjct: 395 VKYTTVVGEAAFYGPKIDI---QIDTALGHEITVSTIQLDFLQP--------KNFDITYT 443

Query: 304 GADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             +GK+   V +    IG      A++     G    W          +  I  +     
Sbjct: 444 DKNGKEARPVMIHRGLIGTYERFVAILLEQTKGNLPFWLA-----PKQITIIPVNLNENL 498

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D    I+ RL      V  DD  E++  +   A +     QVI+G+    D  +  +   
Sbjct: 499 DYSRNIFNRLWNCNFRVKIDDRDERLNKKIREAQMSKSKYQVILGANEEKDKTISYREYG 558

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
               + +++EE IN  +   +N 
Sbjct: 559 KEDTKTVTVEEFINILTKLRNNY 581


>gi|229491433|ref|ZP_04385257.1| prolyl-tRNA synthetase [Rhodococcus erythropolis SK121]
 gi|229321718|gb|EEN87515.1| prolyl-tRNA synthetase [Rhodococcus erythropolis SK121]
          Length = 581

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 124/387 (32%), Positives = 176/387 (45%), Gaps = 30/387 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ASHKL++R G + + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RLSHLFLRTLRDDPSDAEVASHKLLVRAGYVRRIAPGVYSWLPLGLRVLREVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+ +P L   D +  S R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  NAIGGQEILLPALLPRDPYEASNRWTEYGPNLFRLKDRKGNDYMLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQ+Q K+RDE RPR G++R REFLMKD+YSFDLT EG   SY     +Y
Sbjct: 124 YNSYKDFPVTLYQVQTKYRDEERPRAGILRGREFLMKDSYSFDLTDEGLTESYQAHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFD 240
            +IF RLG+K + + A SG +GG  S EF+  ++ GE     C +      + +  T   
Sbjct: 184 EKIFTRLGVKYVIVSATSGAMGGSASEEFLAESEIGEDTYVRCLESGYAANVEAVKTVVP 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D       +     P A   D  N    D+L +     A G ++G               
Sbjct: 244 DS------IPFDGLPEAKVYDTANTPTIDTLVD----WANGADLGR-------------- 279

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T   AD   + +       G   ++   I    D +        +      + I   D  
Sbjct: 280 TVTAADTLKNIMVKTRLPGGEWELL--GIGIPGDREVDEKRLEASLEPAEFVMITETDFK 337

Query: 361 CRDACEKIY---ARLSKVGCDVFWDDM 384
                 K Y     L   G     D  
Sbjct: 338 NNPFLAKGYIGPKALQANGVRYLVDPR 364



 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 65/188 (34%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D+ P+     VSARGIE+GH+F  G KY+   +      +GK     MG
Sbjct: 395 GTIEAAEVRDGDASPDGAGTLVSARGIEIGHVFQLGRKYTDVFTVDVLAENGKPVRPTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R+VA + E  HD KG+ WP  V+P  + L  I   D+  R+  E + A+L + 
Sbjct: 455 SYGVGVSRLVAVIAEQHHDEKGLRWPAEVSPADVYL-VIANKDETAREGAEGLAAQLDRA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +F  ++L+G PL V+VG +  +D KVEI+ R TG   ++     I
Sbjct: 514 GLEVILDDRKASPGVKFKDSELIGVPLIVVVG-RGWADGKVEIRDRFTGESREIDANSAI 572

Query: 436 NYASHRFS 443
                   
Sbjct: 573 EEIISAVR 580


>gi|15644866|ref|NP_207036.1| prolyl-tRNA synthetase [Helicobacter pylori 26695]
 gi|2501038|sp|P56124|SYP_HELPY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|2313329|gb|AAD07305.1| prolyl-tRNA synthetase (proS) [Helicobacter pylori 26695]
          Length = 577

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 99/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   ++  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQNC-DYAANIE 234



 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDRCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +I+G + +   + E   R    ++ +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIIGKQTLESKEFECIKRANLEKQTIKDIELEEK 569

Query: 438 ASHRFSN 444
                 +
Sbjct: 570 ILEMLES 576


>gi|208434185|ref|YP_002265851.1| prolyl-tRNA synthetase [Helicobacter pylori G27]
 gi|226701296|sp|B5ZA05|SYP_HELPG RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|208432114|gb|ACI26985.1| prolyl-tRNA synthetase [Helicobacter pylori G27]
          Length = 577

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 99/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   ++  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQNC-DYAANIE 234



 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 91/187 (48%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQIKESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +IVG + +   + E   R    ++ +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIVGKQALESKEFECIKRANLEKQTLKDTELEEK 569

Query: 438 ASHRFSN 444
                ++
Sbjct: 570 ILEMLAS 576


>gi|254778944|ref|YP_003057049.1| prolyl-tRNA synthetase [Helicobacter pylori B38]
 gi|254000855|emb|CAX28787.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS) (Global RNA
           synthesis factor) [Helicobacter pylori B38]
          Length = 577

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDCCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R++ A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLGAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +I+G + +   + E   R    ++ +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIIGKQTLESKEFECIKRANLEKQTIKDIELEEK 569

Query: 438 ASHRFSN 444
                 +
Sbjct: 570 ILEMLES 576


>gi|207108695|ref|ZP_03242857.1| prolyl-tRNA synthetase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 254

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 99/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   ++  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSKEFVVLTECGEDTIVVCQNC-DYAANIE 234


>gi|331087039|ref|ZP_08336114.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409489|gb|EGG88932.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 564

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 158/307 (51%), Gaps = 5/307 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  +   L+EN ++ +  S  L++R GMI + S GIY  +P+G++ L  +  I+REE
Sbjct: 1   MKLSNSYFYTLRENVKEEDSTSGNLLVRAGMIKKSSSGIYMIMPMGKRVLKKIEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +   +++ +SGR +++G  M  L DR  K  + GPTHEE+ T     
Sbjct: 61  MDAAGAQELLMPAMIPEEIYEKSGRREAFGSNMFALKDRYQKNYVLGPTHEELFTMAAMM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P+  YQIQ KFRDE RPR+G++R REF+MKDAYSFD+   G   SY KMF +
Sbjct: 121 KGSSYKDFPYNLYQIQTKFRDETRPRYGLIRVREFIMKDAYSFDIDEAGLHESYMKMFHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  R  L    ++A++G +GG LS EF  + D GE  +       DF    E T+  
Sbjct: 181 YQNIMERCKLNYKIVKADTGAMGGSLSEEFQAITDIGEDVIVTCDGC-DFSSNLEITEVI 239

Query: 241 DI----ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           D+     +   ++E    P A T +        S+ E  +     ++   + +       
Sbjct: 240 DVSEPSDAEEQVMEVVETPNARTMEEVAAFFHKSVNEFVKTLIYTVDGKTMAFLLKGNRE 299

Query: 297 PMSATFK 303
                  
Sbjct: 300 LNETKVL 306



 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 1/227 (0%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E  +   ++  +        +  D   +N  ++ +     A     +E     +      
Sbjct: 339 ECPIVMDREVTNMKNFIVGANKTDHHIVNVNLKDFEVEIVADIAQVHEGDVCPVCGKPLK 398

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             +GIEVG+ F  GTKY+  +   ++  D K H V+MG YG G  R +AA++E  +D  G
Sbjct: 399 FCKGIEVGNTFKLGTKYAKTLGLEYQDVDNKLHPVEMGCYGFGLERCMAAIVEQHNDEAG 458

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP SVAPF+++++ + + D+       ++Y  L K G DV  DD  E+ G +F   +L
Sbjct: 459 IIWPASVAPFEVAVVVVSSKDEEQMRIGSELYEALKKEGIDVLLDDRKERPGVKFKDMEL 518

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P ++ VG + + + KVE + R      +++L EVI         
Sbjct: 519 IGIPYRITVG-RGIQEGKVEFRARTAAENREIALGEVIKLVKEELQK 564


>gi|295664831|ref|XP_002792967.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
 gi|226278488|gb|EEH34054.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
          Length = 764

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 77/469 (16%), Positives = 145/469 (30%), Gaps = 49/469 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ +  L  L+E   R+      +  L      + S G    LP G K ++ + +++R E
Sbjct: 316 KQMQEHLKFLEEAEKRNHLRIGKEQDLF--FFDEVSPGCPFLLPNGTKIINALQSLLRAE 373

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F  
Sbjct: 374 YRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHAVMFGH 432

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    +  +   + +F 
Sbjct: 433 RERSYRELPLRIADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCTEDQIMQE-IDGLFD 491

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G     ++  + P       E                   ++         
Sbjct: 492 FLRSVYGLFGFSF-KLKLSTRPEKYMGKLE-----------------TWNYAEEQLRAAL 533

Query: 240 DDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTK--- 293
                 +  V E   A Y    D+    + D+L    + +   ++      F        
Sbjct: 534 TKFKGNDWEVDEGDGAFYGPKIDI---TIQDALKREFQCATIQLDYQMPVNFKLEYMTGE 590

Query: 294 ---YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW---------P 341
               + P   T + A   D      S   G  R    VI  +  G    +          
Sbjct: 591 TGAKAKPADKTTEDAANPDAPSTNSSSEPGPGRARPVVIHRAIIGSFERFLGIIIEHFGG 650

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
                     I I        D  E++   L     +V  D  G  +  +     +  + 
Sbjct: 651 KWPFWLSPRQILIVPVMPAVNDYVEELREILRGDKLNVDIDISGNTMQKKIRSGQIAQYN 710

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
              +VG++  +   V I++R     +     + LEE            R
Sbjct: 711 FIFVVGAQEKATRTVNIRNRDDPSSQAKGSLVPLEEARVKLRALRKERR 759


>gi|241948445|ref|XP_002416945.1| threonyl-trna synthetase, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
 gi|223640283|emb|CAX44533.1| threonyl-trna synthetase, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
          Length = 455

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/475 (16%), Positives = 157/475 (33%), Gaps = 72/475 (15%)

Query: 7   FLPI-LQEN----PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           FL    +E       +  I+S +L+  T      S G   +LP G + L+ +   ++ +Q
Sbjct: 18  FLSTKTKEAESSTQSNHVISSKQLLYTT---DPTSPGSIFFLPHGTRILNKLIQFMKNQQ 74

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-----------LADRNDKAMIYGPTH 110
            + G  E+  P +    LW +SG +D+Y  +M +             +  +      P +
Sbjct: 75  TKYGFQEVVTPLIFKTKLWKKSGHWDNYKDDMFKVVGNDITKEEHTDNIEEHEYGLKPMN 134

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
                 IF    +SY+ LP  +       R+E      G+ R R F   D + F    + 
Sbjct: 135 CPSHCMIFAKFDRSYQELPVRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHIFCSMDQI 194

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                          ++  G+  I     + P                E +   + D  D
Sbjct: 195 DGE-IKNTLDLIKDTYNVFGINEIEFYLSTRP----------------EDKFIGNIDTWD 237

Query: 230 FPIPSENTDFDDIISLNSI--VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                     +      +    E   A Y    DV    L D+  +  +V    ++    
Sbjct: 238 IAELQLKNVLNATAGEGNWSIREGDGAFYGPKIDVL---LKDAFNKKHQVGTIQLD---- 290

Query: 288 FYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           F    ++       + G DG      + +     G++    A++    D     WP  + 
Sbjct: 291 FQLPNRF----ELKYVGEDGKRDHQPILVHRAVFGSLERFFAILL---DHYQGKWPFWIN 343

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLS--------------KVGCDVFWDDMGEQIGSQ 391
           P +  ++ I    +      E++  +LS                   V  D  GE +G++
Sbjct: 344 PRQALIVPIN---ESHVPVAEELQKKLSGDIISCDKSIAPLTGFNFHVDVDKRGETVGAR 400

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              A   G+   +++G K +++    ++ R      +M+ +++         + +
Sbjct: 401 TKDAIQKGYSYLIMIGDKDIANGTFAVRSRDDRKIRNMTSDDIYKMFIALEQSYK 455


>gi|210623134|ref|ZP_03293600.1| hypothetical protein CLOHIR_01550 [Clostridium hiranonis DSM 13275]
 gi|210153811|gb|EEA84817.1| hypothetical protein CLOHIR_01550 [Clostridium hiranonis DSM 13275]
          Length = 580

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 107/240 (44%), Positives = 136/240 (56%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK F+P  +E P D EI SHKLM+R+GMI + + GIY+ LPLG K    +  II+EE
Sbjct: 17  MRFSKMFIPTKREIPTDVEIESHKLMIRSGMIKKSASGIYNQLPLGLKVERKIENIIKEE 76

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  EM    L  ++LW ESGR+   G EM RL DR  K    GPTHEEV TDI R 
Sbjct: 77  VEDADFREMLCSALIPSELWQESGRWARRGAEMFRLEDRTGKEFCLGPTHEEVFTDIVRQ 136

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQIQ K+RDE +PRFG +R++ F M DAYSFD   E    SY +M  +
Sbjct: 137 EVSSYKQLPVKLYQIQSKYRDEKKPRFGAIRTKSFTMFDAYSFDKDEESLNKSYEEMIAA 196

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + RIF R G+K   + AESG  G   S EF+V ++ GE ++    D              
Sbjct: 197 FKRIFDRCGVKYSLVEAESGIEGAPSSIEFMVKSEIGEDELAICSDCTYAANRESAECMP 256



 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 64/212 (30%), Positives = 104/212 (49%), Gaps = 3/212 (1%)

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYF 290
            +  T  +                    D  N +  D  P+        RGIE+GHIF  
Sbjct: 369 KNLITGANKTGYHFKNANFGRDFEGTVGDFRNVREGDKCPKCGAPLKIRRGIEIGHIFKA 428

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           G K+S  M+A ++  +  D Y+ +G Y IG  R+ A +IE + D  GI+WP SVAPF++ 
Sbjct: 429 GQKFSENMNAMYRSEEETDEYIHLGCYEIGTERLTATIIEQNFDADGIVWPLSVAPFEVE 488

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +I +   ++   +  E+IY  L  +G DV  DD   + G++F  +DL+G P+++ VG + 
Sbjct: 489 IIPVNLKNEDVVNTAERIYKELKLMGVDVLIDDRDARPGTKFKDSDLIGIPVRITVG-RD 547

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + +  VE+K R +  RE +S  +       R 
Sbjct: 548 LKEGLVEMKFRNSEERELISAVDAAEIVRDRL 579


>gi|308184043|ref|YP_003928176.1| prolyl-tRNA synthetase [Helicobacter pylori SJM180]
 gi|308059963|gb|ADO01859.1| prolyl-tRNA synthetase [Helicobacter pylori SJM180]
          Length = 577

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 99/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   ++  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQNC-DYAANIE 234



 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +I+G + + + + E   R    ++ +   E+   
Sbjct: 510 DTLLDDRDARFGAKMRDFELIGERLALIIGKQTLENKEFECIKRANLEKQTIKDIELEEK 569

Query: 438 ASHRFSN 444
                 +
Sbjct: 570 ILEMLES 576


>gi|225871275|ref|YP_002747222.1| prolyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
 gi|254782916|sp|C0M9E6|SYP_STRE4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|225700679|emb|CAW95268.1| prolyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
          Length = 618

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 162/307 (52%), Gaps = 19/307 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLAHRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++ GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FDKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF  + +    +Y+    +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHQSYDDLDVTYDAYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGETQVFCSKDFMDFPIPS 234
           Y  IF R GL    +  + G +GG  S EF+ +       D             D P   
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITPDRTNLDRWLVLDKSIPSLADIPEEV 240

Query: 235 ENTDFDDIISLNSIVEQWTAP-----YAATSDVHNEKLF--------DSLPENKRVSARG 281
                 ++ S     E   A      YAA  ++   +          D L E +  + + 
Sbjct: 241 LEEIKAELASWLVSGEDTIAYSSESSYAANLEMATSEYKSSSKVTALDDLVEIETPNCKT 300

Query: 282 IEVGHIF 288
           I+    F
Sbjct: 301 IDEVAAF 307



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A  +D+   K  ++ P+   V    RGIE+GHIF  GT+YS  M+A     +G+   +
Sbjct: 414 FQAEYADIREVKEGETSPDRHGVLQFARGIEIGHIFKLGTRYSDSMAANILDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVSKTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D  E++ A L   G DV  DD  E++GS+F+ +DL+G P++V +G K  ++  VEIK
Sbjct: 534 EAQDLTERVEASLMAKGYDVLTDDRNERVGSKFSDSDLIGLPIRVTIGKK-AAEGIVEIK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   ++  + +I   
Sbjct: 593 IKATGDSIEVHADSLIETL 611


>gi|320547753|ref|ZP_08042037.1| proline--tRNA ligase [Streptococcus equinus ATCC 9812]
 gi|320447513|gb|EFW88272.1| proline--tRNA ligase [Streptococcus equinus ATCC 9812]
          Length = 618

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 95/212 (44%), Positives = 137/212 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++++  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQTQMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLNADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTSLIRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    EG   +Y +   +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHADYEGLDETYEEYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y  IF R GL    +  + G +GG  S EF+ 
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMA 212



 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/199 (34%), Positives = 104/199 (52%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+ K V    RGIE+GHIF  GT+YS  M AT    +G+   +
Sbjct: 414 FEAEYVDIREVKEGEISPDGKGVLKFARGIEIGHIFKLGTRYSESMGATILDQNGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + +I +   D+
Sbjct: 474 IMGCYGIGVSRILSAVIEQHARLFVSKTPKGAYRFAWGINFPKELAPFDVHVITVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +    K+ A L + G +V  DD  E++GS+F+ +DL+G P++V VG K  +D  VE+K
Sbjct: 534 EAQALTAKVEAELVEKGYEVLVDDRNERVGSKFSDSDLIGLPIRVTVGKK-AADGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   +++ E +I   
Sbjct: 593 IKATGDTIEVNAENLIETL 611


>gi|55820298|ref|YP_138740.1| prolyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55822188|ref|YP_140629.1| prolyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
 gi|81820361|sp|Q5M1N3|SYP_STRT1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81820523|sp|Q5M674|SYP_STRT2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|55736283|gb|AAV59925.1| prolyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55738173|gb|AAV61814.1| prolyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
          Length = 620

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 102/242 (42%), Positives = 148/242 (61%), Gaps = 2/242 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTVLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDAYSFHQNYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   +  + G +GG  S EF+ +    E         +D  I S +   +
Sbjct: 181 YEAIFTRAGLEFKAIIGDGGAMGGKDSQEFMAVTP--ERTDLNRWVVLDKSIASLDEIPE 238

Query: 241 DI 242
           D+
Sbjct: 239 DV 240



 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FKAEYVDIRKVKEGEISPDGQGVLQFARGIEIGHIFKLGTRYSESMGANVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +AP+ + LI +   D+
Sbjct: 474 IMGCYGIGVSRILSAVIEQHARLFVNKTPKGQYRYAWGINFPKELAPYDVHLITVNTKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +++ A L+  G DV  DD  E++GS+F+ +DL+G P++V VG K  S+  VE+K
Sbjct: 534 EANALTDRLEAALAAEGYDVLIDDRNERVGSKFSDSDLIGLPIRVTVGKK-ASEGVVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   +++ + +I   +
Sbjct: 593 IKATGDTIEVNADNLIETLA 612


>gi|269114879|ref|YP_003302642.1| threonyl-tRNA synthetase (threonine-tRNAligase, thrRS) [Mycoplasma
           hominis]
 gi|268322504|emb|CAX37239.1| Threonyl-tRNA synthetase (Threonine-tRNAligase, ThrRS) [Mycoplasma
           hominis ATCC 23114]
          Length = 579

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 63/441 (14%), Positives = 136/441 (30%), Gaps = 31/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L IL+E   RD       L L T       +G   WL  G K  + +   + +   + G
Sbjct: 169 YLDILRERKERDHRKIGRDLNLFT-FNQLGGQGFPFWLEDGMKIHNAIRDYVLKLDKKFG 227

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P      L+  SG +  Y   M      +++ ++  P        +F S  +SY
Sbjct: 228 FREVLTPHFGEKKLYEISGHWAHYQDTMFAPIKMDNETLVARPMTCPHHIILFNSTRRSY 287

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           ++LP  + +    +R E       +     +        + P+  +  +  ++   L+  
Sbjct: 288 KDLPIRYSEQSRLYRYEASGALSGLERVRGMDLTEGHIFVRPDQIRSEFKHLYKMILQAL 347

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               ++   +                        + F + +  +           ++   
Sbjct: 348 KDFNIEIDHISLSLRDPQDT-------------QKFFQNDEMWNKAENDLREVLGELNIK 394

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                   A Y    D    ++  +L     +S   ++    F   +++ +         
Sbjct: 395 YKEFIGEAAFYGPKVDF---QVKTALNRIITMSTLQLD----FLLPSRFEMKF---VDSN 444

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           +     V +    IG      A +     G    W        I +      +    +  
Sbjct: 445 EQFVTPVLIHRGLIGTYERFIATLLEQTKGVLPFWLSPRQITIIPI------NDELNEKA 498

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +Y        +V  D   E+I  +   A +L     V++G K +  + + ++      
Sbjct: 499 QDLYNEFLDEDFNVNIDIRPERINKKIRDAQILKTKFIVVIGKKEIETNTLSVREYGKDD 558

Query: 426 REDMSLEEVINYASHRFSNNR 446
            +  S EE +NY      N +
Sbjct: 559 SKTYSKEEFVNYLKQLKKNLK 579


>gi|312863998|ref|ZP_07724234.1| proline--tRNA ligase [Streptococcus vestibularis F0396]
 gi|322517545|ref|ZP_08070414.1| proline--tRNA ligase [Streptococcus vestibularis ATCC 49124]
 gi|311100411|gb|EFQ58618.1| proline--tRNA ligase [Streptococcus vestibularis F0396]
 gi|322123805|gb|EFX95379.1| proline--tRNA ligase [Streptococcus vestibularis ATCC 49124]
          Length = 620

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 102/242 (42%), Positives = 148/242 (61%), Gaps = 2/242 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDAYSFHQNYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   +  + G +GG  S EF+ +    E         +D  I S +   +
Sbjct: 181 YEAIFTRAGLEFKGIIGDGGAMGGKDSQEFMAVTP--ERTDLNRWVVLDKSIASLDEIPE 238

Query: 241 DI 242
           D+
Sbjct: 239 DV 240



 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 64/200 (32%), Positives = 104/200 (52%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FKAEYVDIREVKEGEISPDGQGVLQFARGIEIGHIFKLGTRYSESMGANVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +AP+ + LI +   D+
Sbjct: 474 IMGCYGIGVSRILSAVIEQHARLFVNKTPKGQYRYAWGINFPKELAPYDVHLITVNTKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +++ + L+  G DV  DD  E++GS+F+ +DL+G P++V VG K  S+  VE+K
Sbjct: 534 EANALTDRLESALAAEGYDVLIDDRNERVGSKFSDSDLIGLPIRVTVGKK-ASEGVVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   +++ + +I   +
Sbjct: 593 IKATGDTIEVNADNLIETLA 612


>gi|195016104|ref|XP_001984341.1| GH15069 [Drosophila grimshawi]
 gi|193897823|gb|EDV96689.1| GH15069 [Drosophila grimshawi]
          Length = 461

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 140/468 (29%), Positives = 229/468 (48%), Gaps = 50/468 (10%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S  F P L   P++A +        S KL+   G++     G Y  +P+ Q+A+D   
Sbjct: 3   KASSLFWPAL-VTPKNAIVKQTEQLSRSQKLLTELGLVKPGCNGTYQIMPIAQRAVDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++      G  ++S+P L    LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  NLVQRNMQEAGGQKISMPVLTPTQLWKKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 T-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T  +  +   SYR LP   YQI  KFRDEL+ RFG+MR++EFLMKD Y+FD+T E ++ +
Sbjct: 122 TAMLATTAPISYRQLPLRLYQIGPKFRDELKSRFGLMRAKEFLMKDMYTFDVTKEAAEKT 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y ++  +Y + F +L +  + + A +G +GG LSHE+  ++  GE  +    +       
Sbjct: 182 YARISNTYAQFFRQLEVPFVTVEAATGIMGGSLSHEYHYISPVGEDTLLKCNNC------ 235

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYF 290
                                 YA   +V      ++ P     + +  RG+EV H F  
Sbjct: 236 ---------------------GYAGNVEVFGNTSANTCPSCQGSQLIPVRGVEVAHTFLL 274

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           G KYS P+ ATF    GK   + MG YGIG  RV+AA +E     + + WP  +AP+ + 
Sbjct: 275 GDKYSKPLGATFLNTSGKPETLVMGCYGIGITRVIAAALEVLSTEQELRWPKLLAPYDVC 334

Query: 351 LINIKAHDQVCRDACE----KIYARLSKV-GCDVFW-DDMGE-QIGSQFAVADLLGFPLQ 403
           LI  K   +      E    ++  +L+++ G +    DD  E  IG +   A  LG PL 
Sbjct: 335 LIGPKQGSKEQVP-AEGVEIELLQQLTQICGAEELLHDDRKELTIGKRLFDAKRLGHPLT 393

Query: 404 VIVGSKFV--SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++VG+K V   + K+E+ H     + ++ L EV++  +    + + +L
Sbjct: 394 IVVGTKAVQKEEPKLEL-HLSGAEKLELELPEVLSLVTAHVRHKQQLL 440


>gi|289580635|ref|YP_003479101.1| threonyl-tRNA synthetase [Natrialba magadii ATCC 43099]
 gi|289530188|gb|ADD04539.1| threonyl-tRNA synthetase [Natrialba magadii ATCC 43099]
          Length = 650

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/446 (15%), Positives = 134/446 (30%), Gaps = 46/446 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNR 63
            +     +   RD     +++ L +  I      G+  + P G+  L  +   + +    
Sbjct: 239 NFLERKQEAEKRDHRRIGNEMNLFS--IQDVTGPGLPLYHPPGKTVLKELEDFVEDLNKD 296

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   +  P +   DLW  SG Y++Y  +M  + +  D      P +      IF+    
Sbjct: 297 AGYDYVETPHVFKTDLWHRSGHYENYQDDMF-IFNVGDDEFGLKPMNCPGHAAIFQDQSW 355

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP  + +    +R E R    G+ R   F + D +   + P+  +    ++    +
Sbjct: 356 SYRDLPIRYAENGKVYRKEQRGELSGLSRVWAFTIDDGH-LFIRPDQIEQEVEEIMDMII 414

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +     L+     A                  T   +   S +  +       T  +  
Sbjct: 415 DVLETFDLEYEMALA------------------TRPEKSVGSDEIWEHAEEQLETVLEKR 456

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                I E   A Y    D   E   D++          ++    F    ++      ++
Sbjct: 457 NLEYDIEEGDGAFYGPKIDFAFE---DAIGRAWDGPTVQLD----FNMPDRFD----LSY 505

Query: 303 KGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            G D ++H   M    +     R    +IE                              
Sbjct: 506 VGEDNEEHEPVMIHRALYGSYERFFMMLIEHYEGKFPFWLAPEQVRVLPI-------SDA 558

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++          V  DD    +  +   A     P Q+IVG     D  + ++ 
Sbjct: 559 NLGYAYQVANEFDD--FRVEVDDRDSTLERKIRAAHDDRVPYQIIVGDNEEEDGNISVRD 616

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R      D+ +E+  ++        R
Sbjct: 617 RFEDQEYDVEIEDFHDHLVAERDEQR 642


>gi|194749304|ref|XP_001957079.1| GF10245 [Drosophila ananassae]
 gi|190624361|gb|EDV39885.1| GF10245 [Drosophila ananassae]
          Length = 458

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 140/465 (30%), Positives = 221/465 (47%), Gaps = 46/465 (9%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G+I   S G Y  +P+ Q++LD + 
Sbjct: 3   KASRLFCPALI-TPKNAVVKQTEQLSRSQKLLTDLGLIKSGSNGTYQIMPIAQRSLDKLI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++      G  ++S+P L  + LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVQSNMQLAGGQKISLPILTPSALWKKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAI 121

Query: 115 T-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T  +  +   SYR LP   YQI  KFRDEL+ RFG+MR++EFLMKD YSFD++ E ++ S
Sbjct: 122 TAMLATTSPISYRQLPLRLYQIGPKFRDELKSRFGLMRAKEFLMKDMYSFDVSEETARES 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R+F +L +  + + A +G +GG LSHE+  ++  GE  +            
Sbjct: 182 YSAVSEAYDRLFQQLEVPFVKVNAATGMMGGSLSHEYHYVSTVGEDSLVQCTSC------ 235

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                    +  +   +   S   +     RG+E+ H F  G K
Sbjct: 236 --------------------GFAGNSEVLTTPENCPSCQSSNLNEVRGVEIAHTFLLGDK 275

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   V MG YGIG  RV+AA +E     + + WP  +APF + LI 
Sbjct: 276 YSTPLGATFLNTSGKPQSVIMGCYGIGITRVIAAALEVFSSEQELQWPKLLAPFDVCLIG 335

Query: 354 IKAHDQVCRDACEKIYARLSKV------GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIV 406
            K   +  +   E I   L           ++  DD     IG +   A  LG PL ++V
Sbjct: 336 PKQGSKEQQP-AEVIENELLNSVGQLCGPQELLHDDRKDLTIGKRLLEAKRLGHPLTIVV 394

Query: 407 GSKFVSDS--KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           G K +     K+E+ H   G + ++ L E +   +    + + +L
Sbjct: 395 GGKAIQQDSPKLEV-HFNGGDKLELDLSETLKLVAEHSRHKKDLL 438


>gi|260942551|ref|XP_002615574.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238850864|gb|EEQ40328.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 453

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 74/457 (16%), Positives = 149/457 (32%), Gaps = 67/457 (14%)

Query: 16  RDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
            +  I++ +L+     I    + G   +LP G +  + +   ++ +Q + G  E+  P +
Sbjct: 28  ANHAISNKQLL----YITDPVTPGSIFFLPHGTRIFNKLVHFMKNQQLKYGFQEVITPLI 83

Query: 75  QSADLWVESGRYDSYGKEMLR-----------LADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               LW  SG +D+Y  +M +             + +       P +      IF    +
Sbjct: 84  YKTKLWEVSGHWDNYKDDMFKVIGNDLTKEKDSEEAHLHEYGLKPMNCPGHCLIFSKFER 143

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY  LP          R+E      G+ R R F   D + F    +  +           
Sbjct: 144 SYNELPIRLSDFSSLHRNEASGALSGLTRVRRFHQDDGHIFCEMDQIHQE-ITNTINLIK 202

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             ++  G+              D + +      T   +        D       +  D  
Sbjct: 203 DTYNVFGI--------------DSTKDVDFFLSTRPEKFIGDAQTWDEAESQLASVLDTT 248

Query: 243 ISLNSI--VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              N     E   A Y    D+    L D+  +  +V    ++    F    ++      
Sbjct: 249 AGKNKWSIREGDGAFYGPKIDIL---LTDAFNKKHQVGTIQLD----FQLPARF----EL 297

Query: 301 TFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            +   +G   +  + +     G++    A++    D     WP  + P +  +I +    
Sbjct: 298 KYISRNGDRDNQPIMIHRAVFGSLERFFAILL---DHYQGKWPFWINPRQAIIIPVSDKH 354

Query: 359 QVCRDACEKIYARL--------------SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
               +A EK+  +L              +     V  D   E +G++   A   G+   +
Sbjct: 355 H---EAAEKLQKQLVGDIVNSESSIAPMTGYNFFVDVDRRSETVGNRIKDAVKKGYSYIL 411

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +VG K + +  V I+ R +   E+ ++EE+       
Sbjct: 412 MVGDKDIENGTVAIRSRDSRKVENKTVEEIYEKFVSL 448


>gi|315084265|gb|EFT56241.1| threonyl-tRNA synthetase [Propionibacterium acnes HL027PA2]
          Length = 689

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 65/448 (14%), Positives = 128/448 (28%), Gaps = 45/448 (10%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   ++E  R D      +L L +    +   G+  + P G      +   +       G
Sbjct: 250 YQQRIKEAERRDHRKLGAELDLFS-FPEEIGPGLVVFHPKGAMLRHLIEEHVIARHMEAG 308

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEV 113
              +  P +    L+  SG    Y   M                 R  +       +  +
Sbjct: 309 FNFVHTPEITKGGLFHTSGHLPYYADTMFPPMLVDEERDEEGNVTRAGQEYYLKAMNCPM 368

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              IFRS  +SYR LP  F+++   +R E      G+ R R F   D++++    +    
Sbjct: 369 HNLIFRSRGRSYRELPLRFFEMGHDYRYEKSGVVHGLTRMRGFAQDDSHTYCTREQAPGE 428

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              K    +L I    GL    +   +         +FI   +                 
Sbjct: 429 -IKKQIEFFLSILADFGLNDFYLELSTRESDSAKKEKFIGSDED-----------WQVAT 476

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
            + +                 A Y       + ++ D++    ++S    +         
Sbjct: 477 DTLDQVCRSTGLQLVPDPGGAAFYGPKV---SVQVRDAIGRTWQMSTIQYDFNQP----- 528

Query: 293 KYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
                    +  ADG       + S  +G++     V+   + G   +W           
Sbjct: 529 ---ERFDLEYAAADGTHQRPIMLHSAKLGSVERFIGVLTEHYAGAFPVW------LSPVQ 579

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +    +   D        L   G  V  D   ++ G +   A     P  +I G +  
Sbjct: 580 VRLVPVAEAFNDYVTGFAEVLGSRGIRVETDLSSDRFGKKIRNASKDKVPFILIAGGEDA 639

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
               V  + R       + L+  +   +
Sbjct: 640 EAGAVSFRLRDGSQVNGVVLDGAVRIIA 667


>gi|322373816|ref|ZP_08048351.1| proline--tRNA ligase [Streptococcus sp. C150]
 gi|321277188|gb|EFX54258.1| proline--tRNA ligase [Streptococcus sp. C150]
          Length = 620

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 102/242 (42%), Positives = 148/242 (61%), Gaps = 2/242 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++   AI+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKAIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTALVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHQNYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   +  + G +GG  S EF+ +    E         +D  I S +   +
Sbjct: 181 YEAIFTRAGLEFKGIIGDGGAMGGKDSQEFMAVTP--ERTDLDRWVVLDKSIASLDEIPE 238

Query: 241 DI 242
           D+
Sbjct: 239 DV 240



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 414 FKAEYVDIREVKEGEISPDGQGVLKFARGIEIGHIFKLGTRYSESMGANVLDENGRAVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +AP+ + LI +   D+
Sbjct: 474 IMGCYGIGVSRILSAVIEQHARLFVNKTPKGQYRYAWGINFPKDLAPYDVHLITVNTKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E++ A L   G DV  DD  E++GS+F+ +DL+G P++V VG K  S+  VE+K
Sbjct: 534 EATALTERLEAALMAEGYDVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-ASEGVVEVK 592

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   +++ + +I   +
Sbjct: 593 IKATGDTIEVNADNLIETLA 612


>gi|254444928|ref|ZP_05058404.1| threonyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
 gi|198259236|gb|EDY83544.1| threonyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
          Length = 610

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 73/467 (15%), Positives = 133/467 (28%), Gaps = 59/467 (12%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNR 63
            Y   I +   RD      ++ L    I +   +G+  W P G      +   I E+  +
Sbjct: 171 TYIEQIEESRKRDHRRVGKEMGLF--HIDEAVGQGLILWKPKGAVIRQELQDFISEQLLK 228

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSY-----------------------GKEMLRLADRN 100
               ++  P +    L+  SG +  Y                          +    +  
Sbjct: 229 QEYTQVFTPHIGKLGLYKTSGHFPYYQESQFPPLIERDSLADLADENATCSTLTNQLETG 288

Query: 101 DKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMK 158
           D    +  P +  +   I+ S   SYR+LP    +    +R E      G+ R R F   
Sbjct: 289 DIEGYLLKPMNCPMHIKIYDSEPHSYRDLPVRLAEFGTVYRWEQSGELNGMTRVRGFTQD 348

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           DA+ F    +               +F  LG++   +R        D         D  E
Sbjct: 349 DAHIFCTEEQLQGE-IQGCLDLVKIVFGTLGMEDYSVRVSLRDPESDKYVGDPANWDKAE 407

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
             +  +   +D P   E              E   A Y    D     + D +    ++ 
Sbjct: 408 AAIREAVKTLDVPYVEE--------------EGEAAFYGPKIDF---VVKDVIGREWQLG 450

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
              ++      F   Y+                +   +      R    +IE        
Sbjct: 451 TVQVDYNLPVRFDINYTG------SDNKPHRPVMVHRAPFGSMERFCGLLIEHFGGDFPT 504

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                                   D  + +  +L   G     D   +++G++   A+L 
Sbjct: 505 WLAPEQVRILPI-------SDKVADYAQSLLDQLKANGVRATADFNSDKLGAKIRNAELD 557

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             P  +IVG +   ++KV ++ R    +  M  EE         +N 
Sbjct: 558 KVPNTLIVGEREAEENKVSVRSRFHDGKPTMLFEEFETEVLQLINNR 604


>gi|306826599|ref|ZP_07459905.1| proline--tRNA ligase [Streptococcus pyogenes ATCC 10782]
 gi|304431207|gb|EFM34210.1| proline--tRNA ligase [Streptococcus pyogenes ATCC 10782]
          Length = 618

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 158/307 (51%), Gaps = 19/307 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E   DA++ SH LM+R G + Q S GIY++LPL  + ++    I+REE
Sbjct: 1   MKQSKLLIPTLREMSSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHHNYEDLDVTYEDYRQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGETQVFCSKDFMDFPIPS 234
           Y  IF R GL    +  + G +GG  S EF+ +       D             D P   
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMAITPARTDLDRWVVLDKSIASMDDIPKEV 240

Query: 235 ENTDFDDIISLNSIVEQWTAP-----YAATSDVHN--------EKLFDSLPENKRVSARG 281
                 ++ +     E   A      YAA  ++              D+L E +    + 
Sbjct: 241 LEEIKAELAAWMISGEDTIAYSTESSYAANLEMATNEYKPSSKVAAEDALAEVETPHCKT 300

Query: 282 IEVGHIF 288
           I+    F
Sbjct: 301 IDEVAAF 307



 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 73/199 (36%), Positives = 104/199 (52%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+   V    RGIEVGHIF  GT+YS  M AT    +G+   +
Sbjct: 414 FQAEYVDIREVKEGEISPDGHGVLQFARGIEVGHIFKLGTRYSDSMGATILDENGRTVPI 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V +D   K+ A L   G DV  DD  E++GS+F+ +DL+G P++V VG K  ++  VEIK
Sbjct: 534 VAQDLTAKLEADLMAKGYDVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-AAEGIVEIK 592

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   +++ E +I   
Sbjct: 593 IKATGDSIEVNAENLIETL 611


>gi|152996743|ref|YP_001341578.1| tRNA synthetase class II (G H P and S) [Marinomonas sp. MWYL1]
 gi|150837667|gb|ABR71643.1| tRNA synthetase class II (G H P and S) [Marinomonas sp. MWYL1]
          Length = 395

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 150/427 (35%), Gaps = 42/427 (9%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
               + +L L      Q + G+  W P G     N+   +R    + G  E+  P L   
Sbjct: 4   HRELAEQLDLF--HSEQQAPGMLFWHPNGWHLFQNIQEHMRRCYRQYGFKEVRTPQLMKK 61

Query: 78  DLWVESGRYDSYGKEMLR-LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           +LW  SG  D Y ++M        D+     P        +++  + SYR+LP   ++  
Sbjct: 62  ELWHISGHMDMYAQDMFFGGEQNGDQEYALKPMSCPAHILMYKRGVHSYRDLPLKLFEFG 121

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           L  R+E      G +R R+F   DA+ F       K    +      +I++  G +++ +
Sbjct: 122 LVHRNESSGSLNGCLRLRQFTQDDAHVFCA-WSQVKQEVGQFLQRAKQIYNDYGYQALEV 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           +  + P            A+          D +     +EN  FD  +          A 
Sbjct: 181 KISTQPEKALGDDASWRRAE----------DILKEACQAENVPFDIQV-------GEGAF 223

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQM 314
           Y    ++    L D++    +     ++    F    ++       F    GK +  + +
Sbjct: 224 YGPKIEL---ALQDAVGRIWQCGTIQLD----FNLPDRF----ELEFDNEQGKAEQPIIL 272

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++     ++     G    W           + + + +    D   ++ A L +
Sbjct: 273 HQAVYGSIERWIGILLEVSQGVLPEW------IHPQPVALVSVNDSVLDYANQLRAELEQ 326

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  +     +G +   +  L  P  +I+G +     K+ I  R     E ++ EE+
Sbjct: 327 QGINVSCEFGDHSVGRKIKRSFELKIPNIIIIGEQEAQAGKLTI--RRGKHIEIINQEEL 384

Query: 435 INYASHR 441
           I++   +
Sbjct: 385 ISFLKTK 391


>gi|325663512|ref|ZP_08151922.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470411|gb|EGC73642.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 564

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 157/307 (51%), Gaps = 5/307 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  +   L+EN ++ +  S  L++R GMI + S GIY  +P+G++ L  +  I+REE
Sbjct: 1   MKLSNSYFYTLRENVKEEDSTSGNLLVRAGMIKKSSSGIYMIMPMGKRVLKKIEEIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  GA E+ +P +   +++ +SGR +++G  M  L DR  K  + GPTHEE+ T     
Sbjct: 61  MDAAGAQELLMPAMIPEEIYEKSGRREAFGSNMFALKDRYQKNYVLGPTHEELFTMAAMM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
              SY++ P+  YQIQ KFRDE RPR+G++R REF+MKDAYSFD+   G   SY KMF +
Sbjct: 121 KGSSYKDFPYNLYQIQTKFRDETRPRYGLIRVREFIMKDAYSFDIDEAGLHESYMKMFHA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I  R  L    ++A++G +GG LS EF  + D GE  +       DF    E T+  
Sbjct: 181 YQNIMERCKLNYKIVKADTGAMGGSLSEEFQAITDIGEDVIVTCDGC-DFSSNLEITEVI 239

Query: 241 D----IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           D      +   ++E    P A T +        S+ E  +     ++   + +       
Sbjct: 240 DASEPSDAEEQVMEVVETPNARTMEEVAAFFHKSVNEFVKTLIYTVDGKTMAFLLKGNRE 299

Query: 297 PMSATFK 303
                  
Sbjct: 300 LNETKVL 306



 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 1/227 (0%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E  +   ++  +        +  D   +N  ++ +     A     +E     +      
Sbjct: 339 ECPIVMDREVTNMKNFIVGANKTDHHIVNVNLKDFEVEIVADIAQVHEGDICPVCGKPLK 398

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             +GIEVG+ F  GTKY+  +   ++  D K H V+MG YG G  R +AA++E  +D  G
Sbjct: 399 FCKGIEVGNTFKLGTKYAKTLGLEYQDVDNKLHPVEMGCYGFGLERCMAAIVEQHNDEAG 458

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           IIWP SVAPF+++++ + + D+       ++Y  L K G DV  DD  E+ G +F   +L
Sbjct: 459 IIWPASVAPFEVAVVVVSSKDEEQMRIGNELYEALKKEGIDVLLDDRKERPGVKFKDMEL 518

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G P ++ VG + + + KVE + R      +++L+EVI         
Sbjct: 519 IGIPYRITVG-RGIQEGKVEFRARTAAENREIALDEVIKLVKEELQK 564


>gi|225016294|ref|ZP_03705486.1| hypothetical protein CLOSTMETH_00197 [Clostridium methylpentosum
           DSM 5476]
 gi|224950969|gb|EEG32178.1| hypothetical protein CLOSTMETH_00197 [Clostridium methylpentosum
           DSM 5476]
          Length = 574

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 99/263 (37%), Positives = 141/263 (53%), Gaps = 2/263 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK      +E P DA I SH  ML+ G I Q   GIYS L   ++ ++ +  IIREE
Sbjct: 8   MLLSKLLGERYKEKPADASIPSHIFMLKGGYIRQVGNGIYSMLMPTKRIVNKIENIIREE 67

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     E+  P +   +LW ESGRY+S G E++R  DR+    + G THEE    + R+
Sbjct: 68  MDAIDGQEVLFPVVLPRELWDESGRYESVGSELVRFHDRSGGDYVLGMTHEEAAVHLARN 127

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SY   PF  YQIQ KFRDE R R G++R REF MKDAYSF  + E  +  Y+    +
Sbjct: 128 EAQSYAKYPFMIYQIQTKFRDEPRSRGGLIRVREFTMKDAYSFHTSQEDLERYYDICHKA 187

Query: 181 YLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTD 238
           Y RIF R+GL  +    ++SG +GG ++HEF++L D GE  +  C        +      
Sbjct: 188 YERIFERVGLPEVISVGSDSGMMGGAVAHEFMLLCDAGEDTIVTCDSCGYKANMEVAEGV 247

Query: 239 FDDIISLNSIVEQWTAPYAATSD 261
            D + +  + +++   P A T D
Sbjct: 248 LDKVEAQPAEIKKVHTPGANTID 270



 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 65/188 (34%), Positives = 96/188 (51%), Gaps = 2/188 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y   + V       +         RG+EVG+IF  GTKY+  M   +   DGK     MG
Sbjct: 386 YIDVAKVKEGAKCCNCG-APLKLNRGVEVGNIFQLGTKYTESMQMVYTDQDGKQQTPIMG 444

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R+ A +IES HD  G IWP +VAP++I +  +       +    ++Y +LSK 
Sbjct: 445 CYGIGVGRLAACIIESHHDDYGPIWPYAVAPWQIHICALSNKKMDVQPIARELYDKLSK- 503

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             +V  DD G   G QFA ADLLG P++++V  K + + +VEI  R   I+  + LE++ 
Sbjct: 504 NYEVILDDRGANAGVQFADADLLGVPIRIVVSVKNIENGEVEISTRDKSIQTKVKLEDIE 563

Query: 436 NYASHRFS 443
              +   +
Sbjct: 564 AEIAKIVA 571


>gi|226306102|ref|YP_002766062.1| prolyl-tRNA synthetase [Rhodococcus erythropolis PR4]
 gi|259511615|sp|C0ZY88|SYP_RHOE4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226185219|dbj|BAH33323.1| prolyl-tRNA synthetase [Rhodococcus erythropolis PR4]
          Length = 581

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 123/387 (31%), Positives = 176/387 (45%), Gaps = 30/387 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ASHKL++R G + + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RLSHLFLRTLRDDPSDAEVASHKLLVRAGYVRRIAPGVYSWLPLGLRVLREVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  G  E+ +P L   D +  S R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  NAIGGQEILLPALLPRDPYEASNRWTEYGPNLFRLKDRKGNDYMLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQ+Q K+RDE RPR G++R REFLMKD+YSFDL+ EG   SY     +Y
Sbjct: 124 YNSYKDFPVTLYQVQTKYRDEERPRAGILRGREFLMKDSYSFDLSDEGLTESYQAHRGAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFD 240
            +IF RLG+K + + A SG +GG  S EF+  ++ GE     C +      + +  T   
Sbjct: 184 EKIFTRLGVKYVIVSATSGAMGGSASEEFLAESEIGEDTYVRCLESGYAANVEAVKTVVP 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D       +     P A   D  N    D+L +     A G ++G               
Sbjct: 244 DS------IPFDGLPEAKVYDTANTPTIDTLVD----WANGADLGR-------------- 279

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T   AD   + +       G   ++   I    D +        +      + I   D  
Sbjct: 280 TITAADTLKNIMVKTRLPGGEWELL--GIGIPGDREVDEKRLEASLEPAEFVMITETDFK 337

Query: 361 CRDACEKIY---ARLSKVGCDVFWDDM 384
                 K Y     L   G     D  
Sbjct: 338 NNPFLAKGYIGPKALQANGVRYLVDPR 364



 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/188 (34%), Positives = 97/188 (51%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D+ P+     VSARGIE+GH+F  G KY+   +      +GK     MG
Sbjct: 395 GTIEAAEVRDGDASPDGAGTLVSARGIEIGHVFQLGRKYTDVFTVDVLAENGKPVRPTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R+VA + E  HD KG+ WP  V+P  + L  I   D+  R+  E + A+L + 
Sbjct: 455 SYGVGVSRLVAVIAEQHHDEKGLRWPAEVSPADVYL-VIANKDETAREGAEGLAAQLDRA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  DD     G +F  ++L+G PL V+VG +  +D KVEI+ R TG   ++  +  I
Sbjct: 514 GLEVILDDRKASPGVKFKDSELIGVPLIVVVG-RGWADGKVEIRDRFTGESREIDADSAI 572

Query: 436 NYASHRFS 443
                   
Sbjct: 573 EAIISAVR 580


>gi|317013684|gb|ADU81120.1| prolyl-tRNA synthetase [Helicobacter pylori Gambia94/24]
          Length = 577

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 99/235 (42%), Positives = 136/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  +  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENVTHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +  M  +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDTESLGEEFLNMQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   ++  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQNC-DYAANIE 234



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 93/204 (45%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  ++   ++ +     A      E       +      + +EVGHIF  G  Y+  + A
Sbjct: 373 DFHAVGVDLKGFENLVYADIVQVKESDRCLNCQGALKYHKSLEVGHIFKLGQGYAKSLKA 432

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +F   +GK+ + +MG YGIG  R+++A++E   D  G +W  + APF + ++     D+ 
Sbjct: 433 SFLDKNGKEQFFEMGCYGIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNLKDEA 492

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +    ++Y RL + G DV  DD   + G++    +L+G  L +IVG + +   + E   
Sbjct: 493 QKKLAFEVYERLLQKGVDVLLDDRDARFGAKMRDFELIGERLALIVGKQTLESKEFECIK 552

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R    ++ +   E+         +
Sbjct: 553 RANLEKQTIKDTELEEKILEMLES 576


>gi|149198845|ref|ZP_01875887.1| prolyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
 gi|149138043|gb|EDM26454.1| prolyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
          Length = 577

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 104/323 (32%), Positives = 153/323 (47%), Gaps = 17/323 (5%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK     ++E P+DA+ ASH  ++R G I   S GIY+ LPL ++    +  IIREE
Sbjct: 1   MRLSKLVGKRVKEAPKDAQSASHIFLMRGGYIRPVSTGIYTLLPLAKRMTTKIENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+ +P +  A++W ESGRYDS  + +LR  DRN K M+   THEE +  + R+
Sbjct: 61  MEAVDCQEIMMPVVNPAEIWQESGRYDSVDQSLLRFKDRNQKDMVLAMTHEEAVCHMART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SY+ LP + YQIQ K+RDE R R G++R REF MKDAYSF  + +     Y+++  +
Sbjct: 121 EITSYKQLPASVYQIQTKYRDEARARAGLIRVREFTMKDAYSFHDSEKCLSDYYDRVHQA 180

Query: 181 YLRIFHRLGLKSIPM-RAESGPIGGDLSHEFIVLADTGETQVFCSK-------------- 225
           Y RIF R+GL       +++G IGG LSHEF+ ++D GE  +F S               
Sbjct: 181 YERIFERVGLSDCVSIESDAGMIGGSLSHEFMAISDIGEDTLFLSPDRQYKANREIATAK 240

Query: 226 --DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                +     E        ++  + +      + T+            +      RG  
Sbjct: 241 LVYKKEEAQELEKVHTPTQKTIEEVSKFLGVAESDTAKAVFYASASIEDKVILCIIRGDL 300

Query: 284 VGHIFYFGTKYSLPMSATFKGAD 306
             +    G   S           
Sbjct: 301 EVNETKLGNHLSCGDLVAANDEQ 323



 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 62/196 (31%), Positives = 96/196 (48%), Gaps = 6/196 (3%)

Query: 257 AATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A   DV   +  D  P         +GIEVG+IF  GTKYS  M   +   +GK     M
Sbjct: 382 ADIIDVATVREGDPCPVTGEPLEMLKGIEVGNIFQLGTKYSDSMGVRYLDKNGKAQIPTM 441

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R +A+V E  +D  G +WP S+AP+++ +I +       ++  E++Y  L K
Sbjct: 442 GCYGIGVGRALASVCEQRNDKWGPVWPISIAPYQVHVIALTGGQPEIKEEAEELYKNLQK 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE- 433
            G +V +DD   + G  F  ADL+G PL++I+  K ++    E K R    +E +   E 
Sbjct: 502 EGIEVIFDDRDPKPGFAFNDADLIGVPLRLIISKKSMAQDSYEFKTRDGSEKELIPKAEA 561

Query: 434 ---VINYASHRFSNNR 446
              ++N      +  +
Sbjct: 562 FEFIVNRVKAELNKFK 577


>gi|3859700|emb|CAA21975.1| mitochondrial threonyl tRNA synthetase [Candida albicans]
          Length = 455

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 79/477 (16%), Positives = 158/477 (33%), Gaps = 76/477 (15%)

Query: 7   FLPI-LQEN----PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           FL    +E       +  I+S +L+  T      S G   +LP G + L+ +   ++ +Q
Sbjct: 18  FLSTKTKEAESSTQSNHVISSKQLLYTT---DPTSPGSIFFLPHGTRILNKLIQFMKNQQ 74

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-----------LADRNDKAMIYGPTH 110
            + G  E+  P +    LW +SG +D+Y  +M +             +  +      P +
Sbjct: 75  TKYGFQEVVTPLIFKTKLWKKSGHWDNYKDDMFKVVGNDITKEEYTDNIEEHEYGLKPMN 134

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
                 IF    +SY+ LP  +       R+E      G+ R R F   D + F    + 
Sbjct: 135 CPSHCMIFAKFDRSYQELPVRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHIFCSMDQI 194

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                          ++  G+  I     + P                E +     +  D
Sbjct: 195 DGE-IKNTLELIKDTYNVFGINEIEFYLSTRP----------------EDKFIGEIETWD 237

Query: 230 FPIPSENTDFDDIISLNSIV--EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                     +      +    E   A Y    DV    L D+  +  +V    ++    
Sbjct: 238 IAESQLKNVLNSTAGEGNWATREGDGAFYGPKIDVL---LKDAFNKKHQVGTIQLD---- 290

Query: 288 FYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           F    ++       + G DG      + +     G++    A++    D     WP  + 
Sbjct: 291 FQLPNRF----ELKYVGEDGKRDHQPILVHRAVFGSLERFFAILL---DHYQGKWPFWIN 343

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVG----------------CDVFWDDMGEQIG 389
           P +  ++ I    +      E++  +LS  G                  V  D  GE +G
Sbjct: 344 PRQALIVPIN---ESHVPVAEELQKKLS--GDIVSCDNAIAPLTGFTFHVDIDKRGETVG 398

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++   A   G+   +++G K +++    ++ R     ++M+ +E+         + +
Sbjct: 399 ARTKDAIQKGYSYLIMIGDKDIANGTFAVRSRDDRKIKNMTSDEIYKMFIALEQSYK 455


>gi|328947267|ref|YP_004364604.1| Prolyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
 gi|328447591|gb|AEB13307.1| Prolyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
          Length = 603

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 96/289 (33%), Positives = 154/289 (53%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+     L+++P +A I+SH+LM+R  +I +   G+Y+++P G +A   +  II+EE
Sbjct: 1   MKTSQIPFRTLRDSPSEAIISSHQLMMRADLIRKLGNGLYTYMPFGLRAYRKLEKIIKEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
              +GA+E     +   D+W ESGR+++ G +ML+  +R  + M+  PT EE  T I R 
Sbjct: 61  IEASGAMEFKPTVIVPGDIWKESGRWETMGPQMLKAQNRQQQDMVVSPTAEEAYTAIMRQ 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP   YQI  K+RDE+RPR+GVMR REF M D Y+ +   E    SY     +
Sbjct: 121 GLTSYKQLPINCYQINTKYRDEIRPRYGVMRGREFNMMDGYTLNADDESLDQSYQAYAKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YLRIF RLGL  I ++A++G +GG  S EF+V ++ G+  +   K      +   +   D
Sbjct: 181 YLRIFKRLGLDVITVKADTGAMGGSGSEEFMVESEIGDDTLILCKCGYAANVEKASCAKD 240

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
             + ++    + T          N    D L +  + S   +    I+ 
Sbjct: 241 IPVDIDGNPVKATEKSYEPISTPNVGTIDDLEKYLKCSKHQLLKTLIYK 289



 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/188 (37%), Positives = 106/188 (56%), Gaps = 5/188 (2%)

Query: 259 TSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T+D+   K  D  P   +   + +G E+GHIF  G KY+  M+ T+   +GK     MG 
Sbjct: 412 TADLRTAKAGDICPVCGKPFYTTKGNELGHIFKLGKKYTESMNVTYLDKNGKSAVPTMGC 471

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  RV+A++IE+ HD +GIIWP S AP++++++ IK      ++A +KIY  L K  
Sbjct: 472 YGIGVDRVLASIIEAFHDDRGIIWPMSTAPYQVAIVPIKYSG-AMKEAADKIYDELLKAS 530

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V  DD  E+ G +F   DL+GFP+++ VG K + +  VEIK R +   E + LE    
Sbjct: 531 VEVLLDDRDERPGVKFNDMDLIGFPVRITVGDKNLPN--VEIKMRSSEQAELVPLENAAA 588

Query: 437 YASHRFSN 444
            AS     
Sbjct: 589 KASEIVKT 596


>gi|261837685|gb|ACX97451.1| prolyl-tRNA synthetase [Helicobacter pylori 51]
          Length = 577

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +     + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENATHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +  M  +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNMQST 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 181 YKEILSDLGLDFRVVEADSGAIGGSKSKEFVVLTECGEDTIVVCKNC-DYAANIE 234



 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIVQVKESDRCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDNLGCVWTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLRQKGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +IVG + +   + E   R    ++ +   E+   
Sbjct: 510 DALLDDRDARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTLKDTELEEK 569

Query: 438 ASHRFSN 444
                 +
Sbjct: 570 ILEMLES 576


>gi|77360564|ref|YP_340139.1| prolyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875475|emb|CAI86696.1| prolyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
          Length = 544

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 104/207 (50%), Positives = 135/207 (65%), Gaps = 1/207 (0%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI + + G+Y+WLP G + L  V  I+REE N+  AIEM +P +Q ADLW ESGR+D +G
Sbjct: 1   MIRRVASGLYTWLPTGLRVLRKVENIVREEMNKANAIEMLMPVIQPADLWEESGRWDEFG 60

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            E++R  DR+++    GPTHEEV+TD  R  I SY+ LP + YQIQ K RDE RPRFGVM
Sbjct: 61  PELMRFTDRHNRTFALGPTHEEVITDFVRKEISSYKQLPISLYQIQTKVRDERRPRFGVM 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R+REF MKDAYSF L+ E    +Y  M  +Y  IF RL L   P+ A++G IGG +SHEF
Sbjct: 121 RAREFTMKDAYSFHLSDECLDATYQVMHKAYCNIFERLNLDYRPVIADTGSIGGSVSHEF 180

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENT 237
            VLA++GE  +  S    D+    E  
Sbjct: 181 HVLAESGEDAIAFSD-GSDYAANIEKA 206



 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 99/189 (52%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D+    +      RGIEVGHIF  GTKYS  M A      GK+  + MG
Sbjct: 355 EVADIRNIVEGDASPCGQGTLQIKRGIEVGHIFQLGTKYSQAMKAGVLNESGKNQIMTMG 414

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSK 374
            YGIG  R+VAA IE ++D  GIIWP  +APF ++++ +         D    +Y  L  
Sbjct: 415 CYGIGVSRIVAAAIEQNNDQYGIIWPQPIAPFDLAIVPMNMHKSHRIPDIATNLYQGLKD 474

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G DV +DD  E+ G  F   +L+G P  +++G + + ++KVE+K+R TG +  + ++  
Sbjct: 475 AGLDVLFDDRKERPGVMFNDMELIGVPFTLVIGERNLDENKVELKNRRTGEKLMIDIDTA 534

Query: 435 INYASHRFS 443
           I+       
Sbjct: 535 IDAIKAAVK 543


>gi|260886940|ref|ZP_05898203.1| proline--tRNA ligase [Selenomonas sputigena ATCC 35185]
 gi|260863002|gb|EEX77502.1| proline--tRNA ligase [Selenomonas sputigena ATCC 35185]
          Length = 543

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 103/251 (41%), Positives = 152/251 (60%), Gaps = 4/251 (1%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y++LPL  + +  +  IIREE +  G  E+ +P +Q A++W ESGR
Sbjct: 1   MLRAGMIRKAAGGVYTYLPLAWRTIKKIEQIIREEMDAAGGQELCMPIMQPAEIWQESGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           +  +G+EM RL D + +    GPTHEE++T + R  ++SY+ LP   YQIQ K+RDE+RP
Sbjct: 61  WSVFGQEMFRLKDCHGREFCLGPTHEEMITTLVRDEVRSYKQLPLLLYQIQNKYRDEIRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFG+MRSREF+MKD YSFD    G+  SY KM+ +Y  +F R GLK  P+ A++G IGG+
Sbjct: 121 RFGLMRSREFIMKDLYSFDKDEAGADISYKKMYDAYTNVFTRCGLKFRPVEADAGAIGGN 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF---DDIISLNSIVEQWTAPYAATSDV 262
            +HEF VLA  GE+++ C     D+    E  +    D        +++   P   T ++
Sbjct: 181 HTHEFTVLAAAGESEIACCTAC-DYAANVEKAELLPIDASEEEAQPLKKVETPACKTIEL 239

Query: 263 HNEKLFDSLPE 273
             + L   L  
Sbjct: 240 VADFLRVPLER 250



 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 64/188 (34%), Positives = 99/188 (52%), Gaps = 2/188 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T+D+      D  P         RGIE G +F  GTKYS  + ATF   +GK+  + MG 
Sbjct: 355 TADIRLMAAGDPCPHCGAPVEITRGIEAGQVFKLGTKYSEALGATFLDENGKEKALFMGC 414

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +AA IE  +D  GIIWP ++AP+++ ++ + A         E++Y  L   G
Sbjct: 415 YGIGVGRTMAAAIEQHNDEHGIIWPRAIAPYEVVVVPVNAKASEQLALAEEVYEMLLAAG 474

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            D   DD  ++ G +F  ADL+G+PL++ +G K + + K+E+K R +G   D +  E + 
Sbjct: 475 VDAILDDRKDRAGVKFKDADLIGYPLRITIGPKALEEGKIELKVRRSGESCDCTKAECLA 534

Query: 437 YASHRFSN 444
                  +
Sbjct: 535 KVQELLKD 542


>gi|226293450|gb|EEH48870.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 738

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 74/475 (15%), Positives = 146/475 (30%), Gaps = 62/475 (13%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ +  L  L+E   R+      +  L      + S G    LP G K ++ + +++R E
Sbjct: 291 KQMQEHLKFLEEAEKRNHLRIGKEQDLF--FFDEVSPGCPFLLPNGTKIINALQSLLRAE 348

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F  
Sbjct: 349 YRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHAVMFGH 407

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    +  +   + +F 
Sbjct: 408 RERSYRELPLRIADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCTEDQIMQE-IDGLFD 466

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G     ++  + P       E                   ++         
Sbjct: 467 FLRSVYGLFGFSF-KLKLSTRPEKYMGKLE-----------------TWNYAEEQLRAAL 508

Query: 240 DDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYF----GT 292
                 +  V E   A Y    D+    + D+L    + +   ++      F      G 
Sbjct: 509 TKFKGNDWEVDEGDGAFYGPKIDI---TIQDALKREFQCATIQLDYQMPVNFKLEYMTGE 565

Query: 293 KYSLPMSATFKGA----------------DGKDHYVQMGSYGIGAM-RVVAAVIESSHDG 335
             +    A                      G+   V +    IG+  R +  +IE     
Sbjct: 566 TGAKAKPADKTTEDAANPDAPSTSSNEPGPGRARPVVIHRAIIGSFERFLGIIIEHFGGK 625

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                          +  +        D  E++   L     +V  D  G  +  +    
Sbjct: 626 WPFWLSPRQILIVPVMPAVN-------DYVEELREILRGDKLNVDIDISGNTMQKKIRSG 678

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
            +  +    +VG++  +   V I++R     +     + LEE            R
Sbjct: 679 QIAQYNFIFVVGAQEKATRTVNIRNRDDPSSQVKGSLVPLEEARVKLRALRKERR 733


>gi|229820470|ref|YP_002881996.1| threonyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
 gi|229566383|gb|ACQ80234.1| threonyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
          Length = 671

 Score =  193 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 59/434 (13%), Positives = 123/434 (28%), Gaps = 49/434 (11%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L +    +   G+  + P G      +    R      G      
Sbjct: 256 EAERRDHRRLGSELDLFSV-PEEIGSGLAVFHPKGSVIRMEMEDYSRRRHVEAGYDFAYT 314

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLAD------------RNDKAMIYGPTHEEVMTDIFR 119
           P +  A L+  S   + Y   M                 R  +     P +  +   +F 
Sbjct: 315 PHITKAHLFETSRHLEWYADGMYPPMQLDAEHHEDGTLKREGQDYYLKPMNCPMHNLVFA 374

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +  +SYR LP   ++    +R E      G+ R+R F   DA+ +    +        + 
Sbjct: 375 ARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRARGFTQDDAHIYCTREQMRDEL-ASLL 433

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L +    GL+   +   +                             D    +    
Sbjct: 434 TFVLDLLRDYGLEEFYLELSTRDPEKS----------------VGDDATWDEATATLRDV 477

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                          A Y       + +  D++  + ++S   ++    F  G       
Sbjct: 478 ATASGLELVDDPGGAAFYGPKI---SVQARDAIGRSWQLSTIQLDF---FEPGL-----F 526

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +  +DG       +     G++    A++    +      P  +AP ++  + +   
Sbjct: 527 DLEYTASDGSRQQPVMIHRALFGSIERFFAILL---EHYAGAMPPWLAPVQVRAVPVA-- 581

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +        + A+L         DD  ++   +   A     P  +I G +      V 
Sbjct: 582 -EPFNAYLADVVAQLRAASVRAELDDGDDRFNKKIRTATTQKIPFVLIAGGEDAEAGAVS 640

Query: 418 IKHRLTGIREDMSL 431
            ++R    R  + +
Sbjct: 641 FRYRDGTQRNGVPV 654


>gi|217974767|ref|YP_002359518.1| tRNA synthetase class II [Shewanella baltica OS223]
 gi|217499902|gb|ACK48095.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS223]
          Length = 398

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 136/429 (31%), Gaps = 40/429 (9%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
               + +L L        + G+  W P G     ++   +R    R G  E++ P     
Sbjct: 4   HREIAEQLDLF--HSEPQAPGMIFWHPNGWVLFRDIQEHMRRVYRRNGFEEVNTPVFMKK 61

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK-AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           +LW  SG  D + + M     + +    +  P        +F+  + S+R+LP   ++  
Sbjct: 62  ELWQTSGHMDMFAENMFFGGGKENMDEYVLKPMSCPAHILLFKRGVHSHRDLPLRLFEFG 121

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           L  R+E      G +R+R+F   DA+ F      ++           +++   G  ++ +
Sbjct: 122 LVHRNESSGSLNGCLRARQFTQDDAHVFCC-WSQAEEEIRGFLQRAKQVYGDYGYHNLDV 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           +  + P     S E    A        C  +  D    +                   A 
Sbjct: 181 KISTKPEKALGSDEQWCRAQK-LLDSACQIEGFDAEYQA----------------GEGAF 223

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QM 314
           Y    ++    L DS+    +      +    F    ++ +     +    G+      M
Sbjct: 224 YGPKIEL---SLTDSMGRRWQCGTIQFD----FNLPERFDVH----YTNEQGEFERPVIM 272

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++     ++     G    W           + I + ++       ++      
Sbjct: 273 HQAMYGSIERWLGILLEVSQGNLPDW------LHPVPVAIASVNESNSQFVRQLATLCLA 326

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V  D     +  +         P  + VG K  ++  V +K R  G+   + L E+
Sbjct: 327 RDMRVLVDISQNSVARKMKRFHKQKVPYILTVGDKEEAEKCVSVKCRKDGVMTHIPLAEL 386

Query: 435 INYASHRFS 443
            NY + +  
Sbjct: 387 ANYLADKLE 395


>gi|225684056|gb|EEH22340.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 738

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 74/475 (15%), Positives = 146/475 (30%), Gaps = 62/475 (13%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ +  L  L+E   R+      +  L      + S G    LP G K ++ + +++R E
Sbjct: 291 KQMQEHLKFLEEAEKRNHLRIGKEQDLF--FFDEVSPGCPFLLPNGTKIINALQSLLRAE 348

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F  
Sbjct: 349 YRKRGYQEVQSPNMYDVGIWRQSGHWAHYKDDMFKL-DVEKREWALKPMNCPGHAVMFGH 407

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    +  +   + +F 
Sbjct: 408 RERSYRELPLRIADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCTEDQIMQE-IDGLFD 466

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G     ++  + P       E                   ++         
Sbjct: 467 FLRSVYGLFGFSF-KLKLSTRPEKYMGKLE-----------------TWNYAEEQLRAAL 508

Query: 240 DDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYF----GT 292
                 +  V E   A Y    D+    + D+L    + +   ++      F      G 
Sbjct: 509 TKFKGNDWEVDEGDGAFYGPKIDI---TIQDALKREFQCATIQLDYQMPVNFKLEYMTGE 565

Query: 293 KYSLPMSATFKGA----------------DGKDHYVQMGSYGIGAM-RVVAAVIESSHDG 335
             +    A                      G+   V +    IG+  R +  +IE     
Sbjct: 566 TGAKAKPADKTTEDAANPDAPSTSSNEPGPGRARPVVIHRAIIGSFERFLGIIIEHFGGK 625

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                          +  +        D  E++   L     +V  D  G  +  +    
Sbjct: 626 WPFWLSPRQILIVPVMPAVN-------DYVEELREILRGDKLNVDIDISGNTMQKKIRSG 678

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSNNR 446
            +  +    +VG++  +   V I++R     +     + LEE            R
Sbjct: 679 QIAQYNFIFVVGAQEKATRTVNIRNRDDPSSQVKGSLVPLEEARVKLRALRKERR 733


>gi|304410724|ref|ZP_07392342.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS183]
 gi|307304819|ref|ZP_07584569.1| tRNA synthetase class II (G H P and S) [Shewanella baltica BA175]
 gi|304351208|gb|EFM15608.1| tRNA synthetase class II (G H P and S) [Shewanella baltica OS183]
 gi|306912221|gb|EFN42645.1| tRNA synthetase class II (G H P and S) [Shewanella baltica BA175]
          Length = 403

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 136/429 (31%), Gaps = 40/429 (9%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
               + +L L        + G+  W P G     ++   +R    R G  E++ P     
Sbjct: 4   HREIAEQLDLF--HSEPQAPGMIFWHPNGWALFRDIQEHMRRVYRRNGFEEVNTPVFMKK 61

Query: 78  DLWVESGRYDSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           +LW  SG  D + + M     + +    +  P        +F+  + S+R+LP   ++  
Sbjct: 62  ELWQTSGHMDMFAENMFFGGGKENIDEYVLKPMSCPAHILLFKRGVHSHRDLPLRLFEFG 121

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           L  R+E      G +R+R+F   DA+ F      ++           +++   G  ++ +
Sbjct: 122 LVHRNESSGSLNGCLRARQFTQDDAHVFCC-WSQAEEEIRGFLQRAKQVYGDYGYHNLDV 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           +  + P     S E    A        C  +  D    +                   A 
Sbjct: 181 KISTKPEKALGSDEQWCRAQK-LLDSACQIEGFDAEYQA----------------GEGAF 223

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QM 314
           Y    ++    L DS+    +      +    F    ++       +    G+      M
Sbjct: 224 YGPKIEL---SLTDSMGRRWQCGTIQFD----FNLPERFD----VQYANEQGEFERPVIM 272

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++     ++     G    W           + I + ++       ++ A    
Sbjct: 273 HQAMYGSIERWLGILLEVSQGNLPDW------LHPVPVAIASVNESNSQFVRQLAALCLA 326

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V  D     +  +         P  + VG K  ++  V +K R  G+   + L E+
Sbjct: 327 RDMRVLVDISQNSVARKMKRFHKQKVPYILTVGDKEEAEKCVSVKCRKDGVITHVPLSEL 386

Query: 435 INYASHRFS 443
            +Y + +  
Sbjct: 387 CDYLADKLE 395


>gi|39942942|ref|XP_361008.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|58257459|gb|AAW69351.1| threonyl-tRNA synthetase-like protein [Magnaporthe grisea]
 gi|145009886|gb|EDJ94542.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 812

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 83/499 (16%), Positives = 164/499 (32%), Gaps = 86/499 (17%)

Query: 7   FLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   L+E   RD         L     H +S G   WLP G +  + + + IRE      
Sbjct: 321 YQKFLEEAAKRDHRRIGKDQELF--FFHDYSPGSAMWLPHGTRIYNTLLSYIREIYWEKN 378

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +ADLW +SG +  Y  +M  + D  D      P +      +F    +S+
Sbjct: 379 YEEVITPNIYNADLWKQSGHWQFYKDDMFVIKDEKDT-FGLKPMNCPGHALMFAHRERSH 437

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP+      +  R+E      G+ R R F   DA+ F    +        +F    ++
Sbjct: 438 RELPWRVADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCREDQIKDE-ILDLFDFLRKM 496

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +  +GL    +R  + P     + E    A+         +  +D    SE     ++ +
Sbjct: 497 YTVMGLTF-KLRLSTRPEKYMGAIETWDKAEESL------RQALDEFAASEGGVAWELNA 549

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA---- 300
                    A Y    D+    + D L    + +   ++      F  +Y     A    
Sbjct: 550 ------GDGAFYGPKIDI---AIMDCLNREWQCATIQLDFVQPQNFNLEYMAGEDAAETK 600

Query: 301 -------------TFKGA------------------------------------DGKDHY 311
                          K                                       G    
Sbjct: 601 AKAEGAKITAPKVKVKDPQAIIDSAAAARGETVVEPAGVEGDKKEKEKVIKKLSPGCARP 660

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +     G++     ++    +     WP  ++P +I ++ +        D  E++ + 
Sbjct: 661 VMIHRAMAGSIERFTGIL---CEHYAGKWPLWLSPRQILVVPVGKG---FYDYAEEVRSI 714

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--- 428
             K    V  D  G  +  +     L  +    +VG++ ++  +V +++R     +D   
Sbjct: 715 FKKAKMFVDVDTSGNTLMKKIRTGQLAQYNFIFVVGAEEMNGRQVNVRNRDDPATQDRGQ 774

Query: 429 -MSLEEVINYASHRFSNNR 446
            ++LEE +   + +  +++
Sbjct: 775 PIALEEALEKLA-KLRDDK 792


>gi|114559273|ref|XP_001168878.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 6 [Pan
           troglodytes]
          Length = 684

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 130/456 (28%), Gaps = 89/456 (19%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
             +   RD      +  L     H+ S G   +LP G +  + + A IR E    G  E+
Sbjct: 294 REEAELRDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYAHRGFSEV 351

Query: 70  SVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKAMIYGPTHEEV 113
             PTL S  LW +SG ++ Y ++M                          +   P +   
Sbjct: 352 KTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDTLALKPMNCPA 411

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              +F    +S+R LP          R E      G+ R R F   DA+ F  T +    
Sbjct: 412 HCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHIFCTTDQLEAE 471

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                      ++  LG         + P G                         D   
Sbjct: 472 -IQSCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------LGDPCLWDQAE 512

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                   +      +     A Y    DVH   L D+L    +     ++    F    
Sbjct: 513 QVLKQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPL 565

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           ++       +KG                                       ++PF++ +I
Sbjct: 566 RFD----LQYKGPL------------------------------------WLSPFQVVVI 585

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            + +  +   +  ++    L   G     D D G  +  +   A L  +  Q +VG K  
Sbjct: 586 PVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHYNFQFVVGQKEQ 642

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           S   V I+ R      +  L E +       +   P
Sbjct: 643 SKRTVNIRTRDNRRLGEWDLPEAVQRLVELQNTRVP 678


>gi|329943296|ref|ZP_08292070.1| threonyl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|328814843|gb|EGF84833.1| threonyl-tRNA synthetase [Chlamydophila psittaci Cal10]
          Length = 379

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 69/409 (16%), Positives = 129/409 (31%), Gaps = 40/409 (9%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
           +  + P G    D +    +      G  E+  P L +  LW  SG + +Y + M  L  
Sbjct: 1   MPFFHPRGMIIWDALIGYWKRLHQLAGYKEIQTPQLMNRSLWEVSGHWSNYRENMYTLK- 59

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLM 157
            +D+     P +       +++ + SY+  P    +I    R E+     G+MR R F  
Sbjct: 60  IDDEDYAIKPMNCPGCMLYYKTRLHSYKQFPLRIAEIGHVHRYEVSGALSGLMRVRAFHQ 119

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            DA+   LTPE  +     +      ++   GL+   +   + P                
Sbjct: 120 DDAH-VFLTPEQVEEETLNILHLVSELYSTFGLEYH-LELSTRP---------------- 161

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E     S +  +    +      +  +   I     A Y    D+H           K  
Sbjct: 162 EKATIGSDELWELATAALERALINSNTPFIINPGDGAFYGPKIDIHV----------KDA 211

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDG 335
             R  + G I              +  A G+     M    +     R +  +IE     
Sbjct: 212 IQRTWQCGTI-QLDMFLPERFELEYTNAQGEKSTPVMLHRALFGSIERFLGILIEHFKGR 270

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             +                       +   +K+     K+G  V  DD  E +  +   A
Sbjct: 271 FPLWLSPEHIRLITVA-------DRHQPRAQKLATAWQKLGLIVTVDDSNESVSKKIRNA 323

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             +     V +G + +  + + I+ R   +  DM+ ++ IN      ++
Sbjct: 324 QNMQVNYMVTLGDREIEQNTLAIRTRDNRVLNDMTEDKFINTILEEKNS 372


>gi|109947885|ref|YP_665113.1| prolyl-tRNA synthetase [Helicobacter acinonychis str. Sheeba]
 gi|123173273|sp|Q17W62|SYP_HELAH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|109715106|emb|CAK00114.1| proS [Helicobacter acinonychis str. Sheeba]
          Length = 577

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 97/235 (41%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQIGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR     +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKGNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I + LGL    + A++G IGG  S EF+VL + GE  +   ++  D+    E
Sbjct: 181 YKEILNDLGLDFRIVEADNGAIGGSKSKEFVVLTECGEDTIVVCQNC-DYAANIE 234



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 93/187 (49%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +R     + +EVGHIF     Y+  + A+F   +GK+ + +MG Y
Sbjct: 390 ADIIQVKESDCCPNCQRALKYHKSLEVGHIFKLSQGYAKSLKASFLDKNGKEQFFEMGCY 449

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+V +    ++Y RL + G 
Sbjct: 450 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNLKDEVQKKLAFEVYERLLQRGV 509

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD   + G++    +L+G  L +IVG + + + + E   R    ++ +   E+   
Sbjct: 510 DVLLDDRDVRFGAKMRDFELIGERLALIVGKQTLENKEFECIKRANLEKQTLKDRELEEK 569

Query: 438 ASHRFSN 444
                 +
Sbjct: 570 ILEILES 576


>gi|326431769|gb|EGD77339.1| threonyl-tRNA synthetase isoform 2 [Salpingoeca sp. ATCC 50818]
          Length = 766

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 69/441 (15%), Positives = 139/441 (31%), Gaps = 37/441 (8%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD      +  L        S G   + P G +    +   +RE+    G  E+
Sbjct: 318 MEEAAKRDHRKIGREQQLF--FFDDLSPGSCFFEPRGARIYRTLMEFMREQYITRGFEEV 375

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + +  LW  SG +  Y  E +   +  ++     P +      +F    +SY+ LP
Sbjct: 376 VTPNIFNKRLWETSGHWQHY-AENIFSFEVENETFAMKPMNCPSHCVMFSHRNRSYKELP 434

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                  +  R+EL     G+ R R F   DA+ F    +               ++   
Sbjct: 435 LRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRPEQIEDE-IKGCLAFLNAVYGTF 493

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G         + P       E                   +    S     D+      +
Sbjct: 494 GFTYELN-LSTRPEKFLGDVE-----------------VWERAEASLAKALDEFGHEWKL 535

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    D+    + D+L  + + +   ++    F    +++L      K     
Sbjct: 536 NPGDGAFYGPKIDI---TVHDALKRSFQCATIQLD----FQLPIRFNLEYVPARKEEGVV 588

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              V +    +G++  + A++    +     WP  ++P +  ++ I           E++
Sbjct: 589 YRPVIIHRAILGSVERMFAIL---CEHYAGKWPFWLSPRQAQVVPI---HPEFNKYAEEV 642

Query: 369 YARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
                  G  V  D D    +  +   A +  +   ++VG        V ++ R      
Sbjct: 643 RMFFHTHGFAVDVDADDSLTLQKKVRRACVEQYNFILVVGEAECKKRTVNVRTRDGSRIG 702

Query: 428 DMSLEEVINYASHRFSNNRPV 448
           ++SL+E++           PV
Sbjct: 703 ELSLDELLCDWKQLRDTRAPV 723


>gi|269127985|ref|YP_003301355.1| prolyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
 gi|268312943|gb|ACY99317.1| prolyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
          Length = 565

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 94/264 (35%), Positives = 137/264 (51%), Gaps = 10/264 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+++ P L+++P DAE A H+L++R G I + + G YS LP   +    +  +IR+E
Sbjct: 1   MRWSRFYAPTLRQDPADAETAGHRLLVRAGFIRRLAAGHYSLLPPAARVRSKIIEVIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA E+ +P LQ A+LW  +GR+D+ G+E  RL DR       G THEEV+     +
Sbjct: 61  MDRIGAQEVLLPALQPAELWRRNGRWDASGEETFRLTDRKGAEAALGTTHEEVVA-SLAT 119

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP  +YQ Q  FRDE RPR G++  REF +KDAYS D      + S+     +
Sbjct: 120 ELGSYRRLPQLWYQFQTAFRDEARPRSGLLGLREFTLKDAYSLDADEAALEGSFQAHREA 179

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF---MDFPIPSENT 237
           Y RIF RLGL  I  +      G   S EF+  ++ G+  V          D    +   
Sbjct: 180 YRRIFQRLGLPVIEAQ------GPGGSLEFLCPSEAGDDAVVRCPACGYAADAETAASRL 233

Query: 238 DFDDIISLNSIVEQWTAPYAATSD 261
                       E++  P+A T +
Sbjct: 234 APVTDGPGPEKPERFDTPHAKTIE 257



 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 2/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARG--IEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
              A +D+   +  +  P   +       IEV H+   G + +  + A   G DG +   
Sbjct: 374 AVTAWADLRRARAGEPCPSCGQALETTPAIEVAHLRKPGRRCTEALGARVLGPDGTEITP 433

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG Y IG  R +AA+ E+ HD  G+ WP  +APF +++  +   D     A E+IY  L
Sbjct: 434 LMGRYSIGVERAIAAIAETGHDDSGLRWPAGIAPFDVAVTLLDPRDDQVTAAAEQIYTAL 493

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +  G +   DD  E+ G++FA  +L+G P +V VG + +    VEIK R TG  + + + 
Sbjct: 494 AAAGVETILDDRDERPGAKFADTELIGIPYRVTVGKRGLKSGTVEIKTRATGRTDTVPIP 553

Query: 433 EVINYASHRFSN 444
           E     +    +
Sbjct: 554 EAAARVTALLKS 565


>gi|149238003|ref|XP_001524878.1| threonyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146451475|gb|EDK45731.1| threonyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 754

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 158/452 (34%), Gaps = 45/452 (9%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++   + +   RD      +  L   + ++ S G   WLP G +  + +   +R E  
Sbjct: 332 MTEHLKFLAEAAERDHRKIGREQELF--IFNEVSPGSAMWLPHGTRIYNTLVDTLRYEYR 389

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + S  LW  SG + +Y + M       +      P +      +F+S  
Sbjct: 390 KRGYEEVITPNMYSTKLWETSGHWQNYKENMFSFEVEKET-FGLKPMNCPGHCVLFKSRE 448

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP+      +  R+E      G+ R R F   DA+ F  T +             
Sbjct: 449 RSYRELPWRVADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCTTEQ------------- 495

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                 +G +   +      + G    EF +   T   +     +  +          D+
Sbjct: 496 ------IGTEIAGVFDLLKKMYGIFGFEFKMELSTRPEKYVGDLETWNSAEEKLANALDE 549

Query: 242 I--ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                   +     A Y    D+    + D+L    + +   ++    F   +++ L   
Sbjct: 550 FLGKGKWELNPGDGAFYGPKIDIM---ISDALKRWFQCATIQLD----FQLPSRFELEYR 602

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                A   +  V +    +G++  + A++    +     WP  ++P +I ++ +     
Sbjct: 603 TDSNNA--LERPVMIHRAILGSVERMTAILT---EHYKGKWPFWLSPRQILIVPVGPK-- 655

Query: 360 VCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +  EK+   L+         D  G  +  +     +L +    IVG     ++ V I
Sbjct: 656 -YYEYGEKLQKLLNNEHFFYCDIDVSGNTLPKKVRSGQMLKYNFIFIVGEAEEQNNSVNI 714

Query: 419 KHRL----TGIREDMSLEEVINYASHRFSNNR 446
           ++R      G  E + +++VI    +     R
Sbjct: 715 RNRDIPEEQGKNEMVKVDDVIKQLINLRDEKR 746


>gi|256545377|ref|ZP_05472740.1| proline--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
 gi|256398938|gb|EEU12552.1| proline--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
          Length = 565

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 100/225 (44%), Positives = 152/225 (67%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+++P+DAE  SHKL++R   I + S G+YS+LPLG K ++ +  I+R+   +  +I
Sbjct: 1   MPTLRDDPQDAETQSHKLLVRGAFIRKTSSGVYSYLPLGMKVINKIENIVRKSMEKYDSI 60

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+S   LQS D+W +SGR+ ++G EM ++ DR+D+    GPT EE  T++ +  + SY+ 
Sbjct: 61  EVSTSVLQSKDIWEKSGRWQNFGPEMFKIKDRHDREFCLGPTAEEQFTNLIKDELNSYKQ 120

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   YQI  KFRDE RPRFG+ RSR+F+MKDAYSFD+  EG K SY KM+ +Y+ +F  
Sbjct: 121 LPLNLYQIVSKFRDEKRPRFGINRSRDFIMKDAYSFDVDMEGLKKSYQKMWDAYVEVFDA 180

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           L L    +  +SG +GG++SHEF+ LA+TGE ++F +++      
Sbjct: 181 LDLDYKIVEGDSGAMGGNISHEFMALAETGEGEIFYTENSNYAAT 225



 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 92/174 (52%), Gaps = 1/174 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            + K   ARGIEVG+IF  GTKYS  + A F   +GK     MGSYGIG  R ++A+IE 
Sbjct: 390 GKEKLQLARGIEVGNIFQLGTKYSESLEAYFLDENGKQKPFIMGSYGIGITRSISAIIEQ 449

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            +D  GIIWP  VAPF+  +  +  +++  ++  EKIY +L   G +V  DD  E+ G +
Sbjct: 450 HYDENGIIWPTKVAPFEAWITLVNKNNEEQKEIAEKIYNKLLDAGIEVMLDDRKERAGVK 509

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           F   DL+G P ++ VG K   D  VE   R       M  +E I        ++
Sbjct: 510 FNDRDLVGVPYRITVG-KDAKDDMVEFSKRSDMENLKMPTDEAIEKIISSIKDD 562


>gi|315222088|ref|ZP_07863998.1| prolyl-tRNA synthetase [Streptococcus anginosus F0211]
 gi|315188838|gb|EFU22543.1| prolyl-tRNA synthetase [Streptococcus anginosus F0211]
          Length = 619

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 96/212 (45%), Positives = 136/212 (64%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+REE
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQISAGVYSYLPLANRVIEKAKKIMREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L SADLW ESGRY++YG+++ +L +R     I GPTHEE  T I R 
Sbjct: 61  FEKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREGSDFILGPTHEETFTAIVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    +    +Y++   +
Sbjct: 121 SVKSYKQLPLNLYQIQAKYRDEKRPRNGLLRTREFIMKDGYSFHANYDSLDVTYDEYKTA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y  IF R  ++   +  + G +GG  S EF+ 
Sbjct: 181 YENIFTRSEIEFKGIIGDGGAMGGKDSQEFMA 212



 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 16/207 (7%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M+AT    +G+   V
Sbjct: 414 FTAEYVDIREVREGEVSPDGQGVLKFARGIEIGHIFKLGTRYSESMNATVLDENGRAVPV 473

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 474 VMGCYGIGVSRLLSAVMEQHARLFVNKTPKGDYRYAWGINFPKELAPFDVHLIPVNVKDE 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E++ A L K G +V  DD  E+ G +F+ +DL+G P++V VG K  +D  VE+K
Sbjct: 534 EALVLTEQLEAELVKAGYEVLTDDRNERAGVKFSDSDLIGLPIRVTVGKK-AADRIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++ ++ ++   +     ++
Sbjct: 593 IKATGDTIEVHVDNLLETLAILTKKDK 619


>gi|227486766|ref|ZP_03917082.1| proline--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235236|gb|EEI85251.1| proline--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
          Length = 563

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 96/219 (43%), Positives = 144/219 (65%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+E+P DAE ASHKL++R   I Q + GIYS+LPLG+K L+ + AI+R+  +  GAI
Sbjct: 1   MPTLREDPVDAETASHKLLVRGAFIRQQASGIYSFLPLGKKVLNKIEAIVRDAMDSYGAI 60

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E++   LQ   +W +S R++++G EM +L DR+++    GPT EE   D+ +  + SY+ 
Sbjct: 61  EVATSILQPRQIWDKSTRWETFGPEMFKLKDRHEREYALGPTAEEAFVDLIKDELNSYKQ 120

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   YQI  KFRDE RPRFG+ RSR+FLMKDAY+FD    G + +Y  M+ SY   F +
Sbjct: 121 LPVNLYQIVDKFRDEKRPRFGINRSRDFLMKDAYTFDEDQAGLEKAYMNMWESYEYAFDK 180

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           + L    +  ++G +GG  SHEFI L+++GE  +  +++
Sbjct: 181 MKLDYKIVEGDTGAMGGHKSHEFIALSESGEGVILYTEN 219



 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 72/174 (41%), Positives = 95/174 (54%), Gaps = 1/174 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 SARGIEVG+IF  GTKYS  + ATF   +G   Y +MGSYGIG  R ++A++E 
Sbjct: 388 GSGTYKSARGIEVGNIFQLGTKYSKALDATFLDQNGVSKYFEMGSYGIGISRSISAIVEQ 447

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            HD KGIIWP SVAPF++ +  IK +D+      E IY +L     DV  DD  E+ G +
Sbjct: 448 YHDDKGIIWPTSVAPFEVIITLIKPNDEDQAKLAEDIYKKLKARRIDVVLDDRKERPGVK 507

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           F   DL+G P ++ VG K   DS VE   R     +++   E IN        +
Sbjct: 508 FNDRDLIGIPYRITVG-KDAKDSIVEYSTRAEMENKNIDANEAINLVCENIQKD 560


>gi|47459403|ref|YP_016265.1| threonyl-tRNA synthetase [Mycoplasma mobile 163K]
 gi|47458733|gb|AAT28054.1| threonyl-tRNA synthetase [Mycoplasma mobile 163K]
          Length = 579

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/434 (14%), Positives = 137/434 (31%), Gaps = 30/434 (6%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L +L+E   RD    +  L L   M    S  G   WL  G K  + +   + E  +R 
Sbjct: 169 YLDLLKERKERDHRTIAKNLDLF--MFSPLSGLGFPIWLENGMKIKNAIMKTVLELDDRY 226

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    L+  SG +  Y  +M       ++ +I  P        IF S + S
Sbjct: 227 GFDEVHTPIVGEQKLYETSGHWAHYKDDMYPPIKVENENLILRPMTCPHHILIFNSRLYS 286

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP  F +    FR E             L                 +  ++      
Sbjct: 287 YRDLPKRFSEQSWLFRHEKSGALTGFERVRALQLTEGHIFARKSQIVDEFKHLYKMINEA 346

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               G+K   +              F       + + +      +       T   ++  
Sbjct: 347 LSIFGIKIDYVS-------------FSRRDPKDKEKFYQDDKLWETAEKDLETVLKELKI 393

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
               +    A Y    D     +   L     +S   ++    F    K+ +    ++  
Sbjct: 394 EYKEMIGEAAFYGPKIDFQVRTV---LNHEITMSTLQLD----FLLPEKFDM----SYVN 442

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + +     +     G +      +    +    ++P  +AP + ++  +  +D++  + 
Sbjct: 443 ENNEREKPVLIHR--GLIGTYERFLSILLEQNKGVFPFWLAPKQFAIAVVNPNDKMQIEY 500

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + +Y  L      V++D+  E++  +   A +       ++G +      + I+     
Sbjct: 501 ADSVYKTLKSKKFHVYFDNRDERLSKKIREAQISKTKYIFVIGEEEAKTKTITIRAYGEE 560

Query: 425 IREDMSLEEVINYA 438
                ++E  +   
Sbjct: 561 STTTSTIENFLKNL 574


>gi|221124302|ref|XP_002161215.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 587

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 106/211 (50%), Positives = 141/211 (66%), Gaps = 1/211 (0%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           +R GMI +   GIY+++P+G + +  V AI+REE NR GA+E+++P +Q A+LW E+GR+
Sbjct: 1   MRAGMIKKLGAGIYNYMPMGLRVIRKVEAIVREEMNRAGAVELTMPVIQPAELWQETGRF 60

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D  G E+LR+ DR+++  +  PT EEV+TDI R  IKSY+ LP   YQIQ KFRDE RPR
Sbjct: 61  DKMGPELLRIKDRHERDYVVQPTSEEVVTDIARQEIKSYKQLPKNLYQIQTKFRDERRPR 120

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           FG+MR REF+MKDAYSFD   + +K SY  M  +Y RIF R GL    + A+SG IGGDL
Sbjct: 121 FGLMRGREFIMKDAYSFDRDQDSAKASYQVMAKAYRRIFDRFGLTYRAVAADSGAIGGDL 180

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           S EF V+A TGE  +       D+    E  
Sbjct: 181 SEEFQVIAATGEDAIVYCPT-SDYAANMEKA 210



 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/188 (39%), Positives = 107/188 (56%), Gaps = 3/188 (1%)

Query: 259 TSDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D+ P+ K V    RGIEVGH+FY GTKYS  M+ATF   +GK  +++MG 
Sbjct: 366 VADLRNVVEGDASPDGKGVLAIERGIEVGHVFYLGTKYSKAMNATFLDVNGKPQFMEMGC 425

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKV 375
           YGIG  R+ AA IE +HD KGIIWPD++APF + L  I        + A +K+Y  L   
Sbjct: 426 YGIGITRLPAAAIEQNHDDKGIIWPDALAPFTVVLCPINPDRFPDVKAAADKLYEELLSA 485

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G+ FA  +L+G P +V +G + + +  VE +HR       + + E+ 
Sbjct: 486 GVDVILDDRNERPGAMFADWELIGVPHRVNIGDRGLKEGVVEYQHRRESAATSVPVAEIA 545

Query: 436 NYASHRFS 443
           +    R  
Sbjct: 546 SLLLGRLK 553


>gi|238061935|ref|ZP_04606644.1| prolyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
 gi|237883746|gb|EEP72574.1| prolyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
          Length = 582

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 97/232 (41%), Positives = 132/232 (56%), Gaps = 1/232 (0%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
             L  L+E+P DAE+ SH+L+LR G I + + G Y+WLPLG+  LD V  ++R E    G
Sbjct: 1   MLLRTLREDPADAEVPSHRLLLRAGYIRRAAPGGYTWLPLGKLVLDRVTDVVRGEMTAIG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L  A+ +  SGR+  YG ++  LADR     +  PTHEE+   + +    SY
Sbjct: 61  DQEVHFPALLPAEPYRTSGRWTEYGDDIFTLADRRGAEHLLAPTHEELAALLVKDLFTSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R+ P T +Q+Q KFRDE RPR G++R REFLMKDAYSFDL   G   +Y +   +Y RIF
Sbjct: 121 RDFPVTLFQVQTKFRDEARPRAGLLRGREFLMKDAYSFDLDDAGLTAAYERHRAAYQRIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            +LGL+   +RA SG +GG  S EF+     GE          D    +E  
Sbjct: 181 DQLGLEYAVVRATSGAMGGSASEEFLAATQVGEDTFVGCTAC-DHAANTEAV 231



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 4/183 (2%)

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           ++V       +         RGIEVGHIF  G +Y+   +    G  GK     MG YGI
Sbjct: 394 AEVRPGDPCSACGVGTLTMRRGIEVGHIFQLGRRYTDAFTVDVLGPAGKPVRPTMGCYGI 453

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R VAA+ E  HD +G++WP +VAP  + L+          DA   +  RL+  G  V
Sbjct: 454 GVSRAVAAIAEQHHDERGLVWPAAVAPCDVHLVAAGKG--PQLDAALDLGTRLAAAGLRV 511

Query: 380 FWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             DD      G +F  A+L+G P  V+VG + ++D  VE++ R TG R ++ +  +++  
Sbjct: 512 LVDDRTHVSAGVKFTDAELIGLPRAVVVGRR-LADGYVELRDRATGERTELPVAGLVDRL 570

Query: 439 SHR 441
              
Sbjct: 571 RDE 573


>gi|27820035|gb|AAO25049.1| GM03563p [Drosophila melanogaster]
          Length = 458

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 133/463 (28%), Positives = 213/463 (46%), Gaps = 48/463 (10%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G +   S G Y  +P+ Q+++D   
Sbjct: 3   KASRIFCPALI-TPKNAVVKQTEQLSRSQKLLTELGFVKSGSNGTYQIMPMAQRSVDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++    + G  ++++P L    LW ++GR D    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVQSNMQQAGGQKITLPILTPTGLWKKTGRLDGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 T-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T  +  +   SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD YSFD++ E +  +
Sbjct: 122 TAMLATTSPISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYSFDVSEETAMET 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y  +  +Y R+F +L +  + + A +G +GG +SHE+  ++  GE  +            
Sbjct: 182 YTVVNAAYDRLFKQLEVPFVKVNAATGIMGGSVSHEYHYVSPVGEDNLLQCSSC------ 235

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                    +  V       S   +     RG+EV H F  G K
Sbjct: 236 --------------------GFAGNSEVVKAPASCPSCNSSDLKEVRGVEVAHTFLLGDK 275

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   + MG YGIG  RV+AA +E       + WP  +AP+ + LI 
Sbjct: 276 YSKPLGATFLNTSGKPQSLVMGCYGIGITRVIAAALEVLSSDHELRWPKLLAPYDVCLIG 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGC-------DVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
            K   +   +  E I   L  +         ++  DD  E  IG +   A  LG PL ++
Sbjct: 336 PKQGSKEQPE-AEVIENELL-LNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLTIV 393

Query: 406 VGSKF--VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           VG+K   +   K+E+     G   ++   E +   +    + +
Sbjct: 394 VGAKSARLDSPKLEVHT-SKGETYELDFSETLKLVAEHSQHKK 435


>gi|240047776|ref|YP_002961164.1| threonyl-tRNA synthetase [Mycoplasma conjunctivae HRC/581]
 gi|239985348|emb|CAT05361.1| Threonyl-tRNA synthetase [Mycoplasma conjunctivae]
          Length = 578

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 133/439 (30%), Gaps = 33/439 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
             FL +L+E   RD      +L + T        G   WL  G K  + +   I     R
Sbjct: 169 NSFLALLEERKERDHRKIGKELKIFT-FTKWFGLGFPVWLENGMKIHNKIKDKILAFDKR 227

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P      L+  SG    Y  +M          +I  P        +F     
Sbjct: 228 YGFREVLTPHFGEKHLYETSGHLAHYRDDMFEPIKAESDYLIPRPMTCPHHIVLFDKAQC 287

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP+   +    +R E      G+ R R   + + + F    +      +      L
Sbjct: 288 SYRQLPYRISEQSRLYRFEKSGALTGLERVRSMDLTEGHIFVSRKQIFDECKH------L 341

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                  L    ++ +          +     D         +   +          D  
Sbjct: 342 FTMIEEVLDFFEIKIDYISFSRRDPEDKSKFYD--------DEQMWNDAENDLKKFLDSH 393

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    D    ++  +L +   +S   ++    F          +  F
Sbjct: 394 NVKYVEKIGEAAFYGPKIDF---QIKTALNKEITISTLQLD----FLLP----KKFNIYF 442

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              + +     +     G +      I    +    + P  ++P ++S+I I        
Sbjct: 443 NNENNEKETPVLIHR--GLIGTYERFISILLEQTKGVLPFWLSPKQVSVIPILPKHD--- 497

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  E + + L+K   +V  D   E+I  +   A +     Q+I+G   V + K+  +   
Sbjct: 498 DYAEFVRSELAKNNFEVEVDTRDERITKKIREAQIQKVKYQLIIGDSEVENQKITYREYG 557

Query: 423 TGIREDMSLEEVINYASHR 441
                  SL+E I   + +
Sbjct: 558 KQESTTTSLDEFIKLLNSQ 576


>gi|195375658|ref|XP_002046617.1| GJ12980 [Drosophila virilis]
 gi|194153775|gb|EDW68959.1| GJ12980 [Drosophila virilis]
          Length = 464

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 137/460 (29%), Positives = 222/460 (48%), Gaps = 40/460 (8%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P+L   P++A +        S KL++  G+I   S G Y  +P+ Q+ +D   
Sbjct: 3   KASRLFWPVLI-TPKNAVVKQTEQLSRSQKLLMELGLIKSGSNGTYQIMPIAQRVVDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
           ++++      G  ++S+P L  A LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  SLVQRNMQEAGGQKISLPVLTPAQLWKKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 T-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T  +  +   SYR LP   YQI  KFRDEL+ RFG+MR++EFLMKD Y+FD++ E ++ +
Sbjct: 122 TAMLATAAPISYRQLPLRLYQIGPKFRDELKSRFGLMRAKEFLMKDMYTFDVSKEAAECT 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y  +  +Y R F +L +  + + A +G +GG LSHE+  ++  GE  +        +   
Sbjct: 182 YATVSDAYERFFRQLEVPFVKVEAATGIMGGSLSHEYHYISPVGEDTLLNCSAC-GYAGN 240

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           +E                        SD        S    +    RG+EV H F  G K
Sbjct: 241 AEVLG---------------------SDAETASTCPSCQSTQLSRVRGVEVAHTFLLGDK 279

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   +QMG YG+G  RV+AA +E     + + WP  +AP+ + LI 
Sbjct: 280 YSKPLGATFLNKSGKPETLQMGCYGVGITRVIAAALEVLSTEQELRWPKLLAPYDVCLIG 339

Query: 354 IKAHDQVCRDACEKIYARLSKV-----GCDVFW-DDMGE-QIGSQFAVADLLGFPLQVIV 406
            K   +      E++   L +      G +    D+  E  IG +   A  LG PL ++V
Sbjct: 340 PKQGSKEQAPV-ERLENELLQQLTQICGAEQLLHDERKELTIGKRLLDAKRLGHPLTIVV 398

Query: 407 GSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRFSNN 445
           G+K       +++   +G  + ++S  EV+   +    + 
Sbjct: 399 GAKAAQQEAPQLELHASGAEKMELSAAEVLRVVATHVQHK 438


>gi|319745866|gb|EFV98156.1| proline--tRNA ligase [Streptococcus agalactiae ATCC 13813]
          Length = 617

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 95/212 (44%), Positives = 135/212 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y  IF R GL    +  + G +GG  S EF+ 
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMA 212



 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+ K     ARGIE+GHIF  GT+YS  M A     +G+ + +
Sbjct: 414 FTAEYVDIREVKEGEISPDGKGTLKFARGIEIGHIFKLGTRYSDSMGANILDENGRSNPI 473

Query: 313 QMGSYGIGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P+ +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGAYRFAWGINFPEELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D  EKI A L   G +V  DD  E++GS+F+ +DL+G P++V VG K  S+  VE+K
Sbjct: 534 ESQDLTEKIEADLMLKGYEVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-ASEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + +G   ++  + +I          +
Sbjct: 593 IKASGDTIEVHADNLIETL--EILTKK 617


>gi|302855151|ref|XP_002959075.1| hypothetical protein VOLCADRAFT_70347 [Volvox carteri f.
           nagariensis]
 gi|300255572|gb|EFJ39869.1| hypothetical protein VOLCADRAFT_70347 [Volvox carteri f.
           nagariensis]
          Length = 563

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/422 (13%), Positives = 118/422 (27%), Gaps = 58/422 (13%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            +   RD      +L L +  I +    G+  W P G      +    +E     G   +
Sbjct: 183 EEAAKRDHRKLGTELNLFS--IQENSGGGLVYWHPKGALVRHLIETFWKELHLSRGYQLV 240

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P +  ADLW  SG  + Y + M       D++    P +      +++    SYR+LP
Sbjct: 241 YSPHIAKADLWRTSGHLEFYKENMYEQMKVEDESYQLRPMNCPFHISVYKDGYYSYRDLP 300

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++   +R E      G+ R R F   DA+ F L  + +      +           
Sbjct: 301 LRLAELGTVYRYERSGTMHGLFRVRGFTQDDAHIFCLPNQITSE-IKGVLDLVEETLGTF 359

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G     +   + P                                +             +
Sbjct: 360 GFHEYEINLSTRPEKS-----------------VGDDVIWSTAEAALVEALGAKGWNYQV 402

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    D+   K+ D++    + S   ++    F    +    ++ T       
Sbjct: 403 DAGGGAFYGPKIDI---KIRDAIGRKWQCSTIQLD----FNLPERLVFAVAIT-LTPFSA 454

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           +    +    +  +R V  +                             +    +    +
Sbjct: 455 ETPAFLNCCVLPFVRQVRLLTV---------------------------NDTVAEYARDV 487

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A++ + G  V        +G     A+    P+  +VG K    + + ++         
Sbjct: 488 AAQMKRAGIRVEV-VGEASMGKLIRNAEKAKIPVICVVGVKEADGNSLSVRLYGGKELGA 546

Query: 429 MS 430
           + 
Sbjct: 547 LP 548


>gi|25011939|ref|NP_736334.1| prolyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|81845546|sp|Q8E362|SYP_STRA3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|24413481|emb|CAD47559.1| prolyl-tRNA synthetase [Streptococcus agalactiae NEM316]
          Length = 617

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 95/212 (44%), Positives = 135/212 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y  IF R GL    +  + G +GG  S EF+ 
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMA 212



 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+ K     ARGIE+GHIF  GT+YS  M A     +G+ + +
Sbjct: 414 FTAEYVDIREVKEGEISPDGKGTLKFARGIEIGHIFKLGTRYSDSMGANILDENGRSNPI 473

Query: 313 QMGSYGIGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P+ +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGAYRFAWGINFPEELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D  EKI A L   G +V  DD  E++GS+F+ +DL+G P++V VG K  S+  VE+K
Sbjct: 534 ESQDLTEKIEADLMLKGYEVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-ASEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + +G   ++  + +I          +
Sbjct: 593 IKASGDTIEVHADNLIETL--EILTKK 617


>gi|77405643|ref|ZP_00782731.1| prolyl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|161486742|ref|YP_330466.2| prolyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|114152259|sp|Q3JZ37|SYP_STRA1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|77175716|gb|EAO78497.1| prolyl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 617

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 95/212 (44%), Positives = 135/212 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y  IF R GL    +  + G +GG  S EF+ 
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMA 212



 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+ K     +RGIE+GHIF  GT+YS  M A     +G+ + +
Sbjct: 414 FTAEYVDIREVKEGEISPDGKGTLKFSRGIEIGHIFKLGTRYSDSMGANILDENGRSNPI 473

Query: 313 QMGSYGIGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P+ +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGAYRFAWGINFPEELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D  EKI A L   G +V  DD  E++GS+F+ +DL+G P++V VG K  S+  VE+K
Sbjct: 534 ESQDLTEKIEADLMLKGYEVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-ASEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + +G   ++  + +I          +
Sbjct: 593 IKASGDTIEVHADNLIETL--EILTKK 617


>gi|22538051|ref|NP_688902.1| prolyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76798737|ref|ZP_00780956.1| prolyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77414704|ref|ZP_00790836.1| prolyl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|81845373|sp|Q8DXD8|SYP_STRA5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|22534955|gb|AAN00775.1|AE014278_2 prolyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76585916|gb|EAO62455.1| prolyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77159248|gb|EAO70427.1| prolyl-tRNA synthetase [Streptococcus agalactiae 515]
          Length = 617

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 95/212 (44%), Positives = 135/212 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y  IF R GL    +  + G +GG  S EF+ 
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMA 212



 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+ K     ARGIE+GHIF  GT+YS  M A     +G+ + +
Sbjct: 414 FTAEYVDIREVKEGEISPDGKGTLKFARGIEIGHIFKLGTRYSDSMGANILDENGRSNPI 473

Query: 313 QMGSYGIGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P+ +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGAYRFAWGINFPEELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D  EKI A L   G +V  DD  E++GS+F+ +DL+G P++V VG K  S+  VE+K
Sbjct: 534 ESQDLTEKIEADLMLKGYEVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-ASEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + +G   ++  + +I          +
Sbjct: 593 IKASGDTIEVHADNLIETL--EILTKK 617


>gi|77412297|ref|ZP_00788612.1| prolyl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|77161644|gb|EAO72640.1| prolyl-tRNA synthetase [Streptococcus agalactiae CJB111]
          Length = 617

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 95/212 (44%), Positives = 135/212 (63%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1   MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 61  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRD 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +
Sbjct: 121 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           Y  IF R GL    +  + G +GG  S EF+ 
Sbjct: 181 YEAIFTRAGLDFKGIIGDGGAMGGKDSQEFMA 212



 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+ K     ARGIE+GHIF  GT+YS  M A     +G+ + +
Sbjct: 414 FTAEYVDIREVKEGEISPDGKGTLKFARGIEIGHIFKLGTRYSDSMGANILDENGRSNPI 473

Query: 313 QMGSYGIGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P+ +APF + LI +   DQ
Sbjct: 474 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGAYRFAWGINFPEELAPFDVHLITVNVKDQ 533

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D  EKI A L   G +V  DD  E++GS+F+ +DL+G P++V VG K  S+  VE+K
Sbjct: 534 ESQDLTEKIEADLMLKGYEVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-ASEGIVEVK 592

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + +G   ++  + +I          +
Sbjct: 593 IKASGDTIEVHADNLIETL--EILTKK 617


>gi|13542113|ref|NP_111801.1| threonyl-tRNA synthetase [Thermoplasma volcanium GSS1]
 gi|22654129|sp|Q978W0|SYT_THEVO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|14325544|dbj|BAB60447.1| tRNA synthetase Thr [Thermoplasma volcanium GSS1]
          Length = 660

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 77/463 (16%), Positives = 144/463 (31%), Gaps = 43/463 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +   RD      ++ L      + + G   + P GQ     +   +     + 
Sbjct: 213 RYLENLEEAKKRDHRKIIAEMDL-AVFNSEWAPGFPMYTPNGQIIRKELIKYMDYVNGKN 271

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  ++  P +    +W +SG Y  Y   M      +  +    P +      IF     S
Sbjct: 272 GWTDVWTPHVFKDTIWKQSGHYAKYKPNMYLFVLPDGDSYGIKPMNCPGHIAIFARRKYS 331

Query: 125 YRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + +    +R E      G+ R R F   D + F    +        + +    
Sbjct: 332 YRDLPVKYSEPGTVYRYEKSGEVGGLTRPRAFTQDDGHEFIRMDQIVGEIKTLLGMVRET 391

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFI---VLADTGET----------QVFCSKDF--- 227
                G  +I M  +   I  +    ++   V  D G               C       
Sbjct: 392 FTTVFG--NIEMAFDLSVIDKEHPENYLLSYVCKDCGNRVEGLRGTDIECPVCHSHNMDP 449

Query: 228 ----MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                D          D +           A Y    DVH   + D+L    ++S   ++
Sbjct: 450 DFSTWDNATEQLRQAMDSMGITYKEYPGEAAFYGPKIDVH---VKDALGRMWQLSTIQVD 506

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
                 FG         T+  ++GK+   V +     G+     A++     GK   W  
Sbjct: 507 FFMPINFG--------LTYTNSEGKEERVVIIHRAIYGSYERFMAILLEHFAGKLPTWLT 558

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            +  + I +    A      +   K+   L   G     DD  + +  +  +        
Sbjct: 559 PIQTYVIPVGTANA------EYARKVNKSLLDAGIRSVVDDGPDTVSKKIKMIHDQRPSY 612

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V+VG+K   D+ V +++R  G  +   + E +    +     
Sbjct: 613 IVVVGAKEEQDNTVTVRNRA-GKSKTYGMNEFLEIIKNEIEKR 654


>gi|213389878|gb|ACJ46005.1| threonyl tRNA synthetase [Palm lethal yellowing phytoplasma]
          Length = 641

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/445 (14%), Positives = 150/445 (33%), Gaps = 33/445 (7%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K +L +L+E   +D +  + +      +      G   WLP G      +   I  ++  
Sbjct: 227 KNYLKLLEERKQKDHKNINKEQEFFM-LTPDVGLGFPLWLPKGATIRRIIERYIVNKELE 285

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHI 122
                +  P L + +L+  SG    Y + M  +    +   ++  P +      IF+  +
Sbjct: 286 YDYQHVYTPVLANIELYQTSGHLKLYKENMFPIMKLQNDEKIVLRPMNCPHHMMIFKKKL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SY++LPF   ++ +  R E       ++    +  +     +T    ++   K+     
Sbjct: 346 RSYKDLPFKIAELGMMHRYEHSGAVSGLQRTRAMTLNDAHIFITENQIENEIIKIINFIF 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++    +        +  +                 + F ++               ++
Sbjct: 406 EVYKDFNITEYYFNLSTRDVNNKK-------------KYFENELIWQRSEFILKNILTEL 452

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    D+   ++  +L   + +S   ++    F          + T+
Sbjct: 453 KIPFKESVGDAAFYGPKIDI---QVLTALNNEETLSTVQLD----FLLP----KKFNLTY 501

Query: 303 KGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            G+D K+H    +    I  +    A +   + G   +W   V    I + NIK      
Sbjct: 502 VGSDNKEHNPILIHRAIISTLERFVAFLIEKNKGFFPLWLAPVQVVLIPINNIK-----Y 556

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +KI     K       +D    +  +   +     P Q+++G K + +S +  +  
Sbjct: 557 LKYTQKINKIFKKNNFRSEINDKDNSLSYKIRESQKNKIPYQIVIGEKELLNSTLTFREY 616

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
            + + + +S+EE I+  + +    +
Sbjct: 617 RSNLSQTVSIEEFIDIFNKKIKEKK 641


>gi|228476457|ref|ZP_04061147.1| prolyl-tRNA synthetase [Streptococcus salivarius SK126]
 gi|228251878|gb|EEK10924.1| prolyl-tRNA synthetase [Streptococcus salivarius SK126]
          Length = 621

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 101/242 (41%), Positives = 147/242 (60%), Gaps = 2/242 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++SK  +  L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++    I+REE
Sbjct: 2   MKQSKMLISTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKTIMREE 61

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R 
Sbjct: 62  FEKIGAVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTALVRD 121

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +KSY+ LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    E    +Y     +
Sbjct: 122 AVKSYKQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDAYSFHQNYEDLDVTYEDYRKA 181

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF R GL+   +  + G +GG  S EF+ +    E         +D  I S +   +
Sbjct: 182 YEAIFTRAGLEFKGIIGDGGAMGGKDSQEFMAVTP--ERTNLNRWVVLDKSIASLDEIPE 239

Query: 241 DI 242
           D+
Sbjct: 240 DV 241



 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 415 FKAEYVDIREVKEGEISPDGQGVLQFARGIEIGHIFKLGTRYSESMGANVLDENGRAVPI 474

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +AP+ + LI +   D+
Sbjct: 475 IMGCYGIGVSRILSAVIEQHARLFVNKTPKGQYRYAWGINFPKELAPYDVHLITVNTKDE 534

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E++ A L   G DV  DD  E++GS+F+ +DL+G P++V VG K  S+  VE+K
Sbjct: 535 EANALTERLEAALMAEGYDVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-ASEGVVEVK 593

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   +++ + +I   +
Sbjct: 594 IKATGDTIEVNADNLIETLA 613


>gi|320583490|gb|EFW97703.1| Mitochondrial threonyl-tRNA synthetase [Pichia angusta DL-1]
          Length = 427

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 148/434 (34%), Gaps = 51/434 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI   S G   +LP G +  + +   ++ +Q + G  E+  P +   DLW  SG +D+Y 
Sbjct: 27  MIDASSPGSVFFLPHGTRIFNRLVQFMKIQQEKHGFTEVISPLMYKKDLWETSGHWDNYA 86

Query: 91  KEMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           ++M R+      ++ +      P +      IF    +S+  LP          R+E   
Sbjct: 87  EDMFRVESNSSSNKLEAVYGLKPMNCPGHCVIFGRFARSHHELPIRLSDWSSLHRNEPSG 146

Query: 146 R-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              G+ R R F   D + F    +       K        +   G +   M   + P   
Sbjct: 147 ALTGLTRVRRFHQDDGHIFCSKSQVGAE-IGKTLQLIRLCYSVFGFQKYRMMLSTRPETH 205

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             + E    A+    +        +                 +I ++  A Y    DV  
Sbjct: 206 IGTVEEWEEAENELQKALDRHAGPEN---------------WAIRDKDGAFYGPKIDVL- 249

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             + D   +  + +   ++    F    ++       ++G  G +  + +     G++  
Sbjct: 250 --VTDRTGKEHQAATVQLD----FQLPQRF----QLEYQGEHGPETPIMVHRAVFGSVER 299

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR------------L 372
             A++    D     WP  ++P +  +I +    +   +    I  +            L
Sbjct: 300 FMALL---MDEYEGKWPFWLSPRQAVIIPVN---ETHLEYSRGIQEKLGGQQDLDVACSL 353

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             V   V  D   E +G +   A   G+   ++VG + V   K+ ++ R     + M ++
Sbjct: 354 RDVNYYVDVDSRAETVGLRTKDAIQKGYNYIILVGDREVQSGKIAVRSRDNRKVQTMDID 413

Query: 433 EVINYASHRFSNNR 446
           E+    +    + +
Sbjct: 414 ELQTLFADLEKSYK 427


>gi|156098721|ref|XP_001615376.1| threonyl-tRNA synthetase [Plasmodium vivax SaI-1]
 gi|148804250|gb|EDL45649.1| threonyl-tRNA synthetase, putative [Plasmodium vivax]
          Length = 912

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 91/482 (18%), Positives = 148/482 (30%), Gaps = 51/482 (10%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E   RD      KL          S G   WLP G K  + +   +R E     
Sbjct: 427 YLNFLEEAKKRDHRNVGKKLHFF-FFDKDTSPGSCFWLPHGAKIYNKLIDFVRREYRIRL 485

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + S DLW  SG Y +Y   M  + +   K     P +      +F+    SY
Sbjct: 486 YDEVITPNVFSCDLWRTSGHYQNYKDCMF-IFNVEQKEWGMKPMNCPGHCVMFKQLNASY 544

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP       +  R+E+     G+ R R F   D++ F  T E  K            I
Sbjct: 545 RSLPIRLADFGVLHRNEISGSLSGLTRVRRFQQDDSHIFC-TFEQIKEEVLGTLHFIFFI 603

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF---------------------- 222
           +   G K       + P     +      A+                             
Sbjct: 604 YDLFGFKYELF-LSTRPKKFIGNISTWDFAEQALKDALNSANIPWKLNEGDGAFYGPKID 662

Query: 223 ------------CSKDFMDFPIP---SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                       C    +DF +P   +      D  +L    +   A      +V  E  
Sbjct: 663 ILLKDSINRTHQCGTIQLDFQLPCRFNLQYKNRDFGALAEGGDGEGAAAKREEEVGAEVA 722

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             +        A           G   +    A      G D  V +    +G++    A
Sbjct: 723 AGAEVAAGAAGAADATDAANGANGANTADAAPAAELLKRGFDRPVIIHRAILGSVERFVA 782

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++     GK   W             +        D    ++  L+    DV  D     
Sbjct: 783 ILIEHTAGKLPFW------ISPRQAIVLPVSDKFNDYAHYVHQTLNNHLFDVEIDTSLNT 836

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEEVINYASHRFS-NN 445
           +  +   A L  F   ++VG K ++ + V +++R      ++ SLEE+I         N+
Sbjct: 837 LNKKIREAQLNQFNFILVVGEKELTTNTVTVRNRDDQNNHEVCSLEELIARFGKLLEVNS 896

Query: 446 RP 447
           +P
Sbjct: 897 KP 898


>gi|330723715|gb|AEC46085.1| threonyl-tRNA synthetase [Mycoplasma hyorhinis MCLD]
          Length = 581

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 141/442 (31%), Gaps = 34/442 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL ILQE   RD      +L L T       +G   WL  G K ++ +   I     + G
Sbjct: 170 FLHILQERKERDHRKLGKELKLFT-FNKLFGQGFPIWLEDGMKIVNKIKEKILFYDKKYG 228

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P      L+  SG +  Y ++M        + +I  P        +F +  KSY
Sbjct: 229 FKEVFTPHFGEQKLYEISGHFAHYKEDMFGALVVEGENLIPRPMTCPHHIILFDTFKKSY 288

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP+   +    +R E      G+ R R  L+ + + F    +     +  ++     +
Sbjct: 289 RELPYRISEQSRLYRYEKSGALTGLERVRSMLLTEGHIFVAKTQIVDE-FKHLYQMISEV 347

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                ++   +              F       + + F      +           ++  
Sbjct: 348 LKFFKIEVNYVS-------------FSKRDPENKEKFFDDDQMWNQAESDLEKVLKELGV 394

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    D   + +   L     +S   ++    F            +F  
Sbjct: 395 EYQEKIGEAAFYGPKIDFQIKTV---LNHEITISTLQLD----FLLP----KKFDISFIN 443

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D       +   G IG      +++     G    W           + I   +    D
Sbjct: 444 QDNAKETPILIHRGLIGTYERFVSILLEQTKGILPFWLS-----PKQFVVIPIENSKHSD 498

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I  +L ++  +V  DD  E+I  +   A +     Q+IVG + V +  +  +    
Sbjct: 499 FALEIAKKLEELNFNVTVDDRNERINKKIREAQMQKTKFQIIVGDQEVENKNITYREYGQ 558

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                ++ E++I +   +  NN
Sbjct: 559 QNSNTLNFEDLIKFIKAKIENN 580


>gi|72080917|ref|YP_287975.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
 gi|71914041|gb|AAZ53952.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
          Length = 579

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 142/437 (32%), Gaps = 35/437 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL ILQE   RD      KL L T        G   WL  G +  + +   I E     G
Sbjct: 170 FLGILQERQERDHRKIGAKLKLFT-FSSYFGLGFPVWLENGMRIYNKIRQKILEFDRNYG 228

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P     +L+  SG    Y  +M +     ++ +I  P        +F   + SY
Sbjct: 229 FREVLTPHFGHKELYKISGHLLHYRDDMFKGLKIENEELIPRPMTCPHHIILFSQQLFSY 288

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           RNLP+   +    +R E      G+ R R   + + + F    +      + +F     +
Sbjct: 289 RNLPYRISEQSRLYRYEKSGALLGLERVRAMDLTEGHIFVSKSQIFSE-ISHLFQMISEV 347

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                ++   +              F       + + F      +          D    
Sbjct: 348 LDFFKVQIFYIS-------------FSKRDPKNKDKFFQDDQMWEQAEADLKQFLDQNKI 394

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    D    ++  +L +   +S   ++    F    K+      +F  
Sbjct: 395 NYIEKIGEAAFYGPKIDF---QVKTALNKELTISTLQLD----FLLPEKF----KISFIN 443

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              K     +   G IG      A++     G    W           I +    +   D
Sbjct: 444 EHNKKETPILIHRGLIGTYERFIALLLEQSKGNLPFW------ISPKQIIVIPVAEKHND 497

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +KI+  L  +G +   D   E+I  +   A+L     QVI+G + ++ +++  +   +
Sbjct: 498 FAQKIHKILFDLGFNSEIDLRSERISRKIREANLEKINFQVIIGDEEIAKNEITYRKFGS 557

Query: 424 GIREDMSLEEVINYASH 440
                +SL + ++   +
Sbjct: 558 PELFRISLVDFVDLLKN 574


>gi|284166054|ref|YP_003404333.1| threonyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
 gi|284015709|gb|ADB61660.1| threonyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
          Length = 649

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 68/445 (15%), Positives = 127/445 (28%), Gaps = 46/445 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +     +   RD     +++ L +  I      G+  + P G+  L  +   + +     
Sbjct: 239 FLERKQEAEKRDHRRIGNEMNLFS--IQDVTGPGLPLYHPPGKTVLKELEDFVEDLNKDA 296

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P +   DLW  SG Y++Y  +M  + D  D      P +      IF+    S
Sbjct: 297 GYDYVETPHVFKTDLWHRSGHYENYQDDMF-IFDVGDDEFGLKPMNCPGHAAIFQDQSWS 355

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  + +    +R E R    G+ R   F + D + F    +  +    ++      
Sbjct: 356 YRDLPIRYAENGKVYRKEQRGELSGLSRVWAFTIDDGHLFIRPDQIRQE-VEEIMDMITD 414

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +     L+     A                  T   +   S +  D          ++  
Sbjct: 415 VLETFDLEYEMALA------------------TRPEKSVGSDEIWDRAEEQLENVLENRA 456

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D   E   D++  +          G                + 
Sbjct: 457 HDYEVEEGDGAFYGPKIDFAFE---DAIGRSW--------DGPTVQLDFNMPERFDLNYV 505

Query: 304 GADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G D ++H   M    +     R    +IE       +                       
Sbjct: 506 GEDNEEHRPVMIHRALYGSYERFFMMLIEHYEGRFPLWLAPEQVRVLPI-------SDDN 558

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                ++          V  D     +  +   A     P Q+IVG     D  + ++ R
Sbjct: 559 LGYAHRVANEFDD--FRVEVDGRDSTLERKIRAAHDDRVPYQIIVGDNEEDDGNISVRDR 616

Query: 422 LTGIREDMSLEEVINYASHRFSNNR 446
                 D+ +E+   +        R
Sbjct: 617 FEDQEYDVEIEDFKQHLEAEIEEQR 641


>gi|304373385|ref|YP_003856594.1| Threonyl-tRNA synthetase [Mycoplasma hyorhinis HUB-1]
 gi|304309576|gb|ADM22056.1| Threonyl-tRNA synthetase [Mycoplasma hyorhinis HUB-1]
          Length = 581

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 141/442 (31%), Gaps = 34/442 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL ILQE   RD      +L L T       +G   WL  G K ++ +   I     + G
Sbjct: 170 FLHILQERKERDHRKLGKELKLFT-FNKLFGQGFPIWLEDGMKIVNKIKEKILFYDKKYG 228

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P      L+  SG +  Y ++M        + +I  P        +F +  KSY
Sbjct: 229 FKEVFTPHFGEQKLYEISGHFTHYKEDMFGALVVEGENLIPRPMTCPHHIILFDTFKKSY 288

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP+   +    +R E      G+ R R  L+ + + F    +     +  ++     +
Sbjct: 289 RELPYRISEQSRLYRYEKSGALTGLERVRSMLLTEGHIFVAKTQIVDE-FKHLYQMISEV 347

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                ++   +              F       + + F      +           ++  
Sbjct: 348 LKFFKIEVNYVS-------------FSKRDPENKEKFFDDDQMWNQAESDLEKVLKELGV 394

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    D   + +   L     +S   ++    F            +F  
Sbjct: 395 EYQEKIGEAAFYGPKIDFQIKTV---LNHEITISTLQLD----FLLP----KKFDISFIN 443

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            D       +   G IG      +++     G    W           + I   +    D
Sbjct: 444 QDNAKETPILIHRGLIGTYERFVSILLEQTKGILPFWLS-----PKQFVVIPIENSKHSD 498

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I  +L ++  +V  DD  E+I  +   A +     Q+IVG + V +  +  +    
Sbjct: 499 FALEIAKKLEELNFNVTVDDRNERINKKIREAQMQKTKFQIIVGDQEVENKNITYREYGQ 558

Query: 424 GIREDMSLEEVINYASHRFSNN 445
                ++ E++I +   +  NN
Sbjct: 559 QNSNTLNFEDLIKFIKAKIENN 580


>gi|195492914|ref|XP_002094195.1| GE21696 [Drosophila yakuba]
 gi|194180296|gb|EDW93907.1| GE21696 [Drosophila yakuba]
          Length = 458

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 134/457 (29%), Positives = 213/457 (46%), Gaps = 48/457 (10%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+++D   
Sbjct: 3   KASRIFCPALI-TPKNAVVKQTEQLSRSQKLLTELGLVKSGSNGTYQIMPMAQRSVDKFI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++      G  ++++P L    LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVQSNMLLAGGQKITLPILTPTALWRKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 T-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T  +  +   SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD YSFD+  E ++ +
Sbjct: 122 TAMLASTSPISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYSFDVCEETARET 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R+F +L +  + + A++G +GG +SHE+  ++  GE  +            
Sbjct: 182 YSVVNAAYDRLFKQLEVPFVKVNADTGMMGGSVSHEYHYVSAVGEDNLLQCSSC------ 235

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                    T  V       S         RG+EV H F  G K
Sbjct: 236 --------------------GFAGNTEVVKTPASCPSCNSTDLKEVRGVEVAHTFLLGDK 275

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   + MG YGIG  RV+AA +E       + WP  +AP+ + LI 
Sbjct: 276 YSKPLGATFLNTKGKPQSLVMGCYGIGITRVIAAALEVLSSDHELHWPKLLAPYDVCLIG 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGC-------DVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
            K   +   +  E I   L  +         ++  DD  E  IG +   A  LG PL ++
Sbjct: 336 PKQGSKEQSE-AEMIENELV-LNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLIIV 393

Query: 406 VGSKFV--SDSKVEIKHRLTGIREDMSLEEVINYASH 440
           VG+K +     K+E+     G   ++ L E +   + 
Sbjct: 394 VGAKAIRQDSPKLEVHT-SKGETLELDLSETLKLVAE 429


>gi|24656200|ref|NP_647737.1| Prolyl-tRNA synthetase [Drosophila melanogaster]
 gi|7292265|gb|AAF47674.1| Prolyl-tRNA synthetase [Drosophila melanogaster]
          Length = 458

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 133/463 (28%), Positives = 214/463 (46%), Gaps = 48/463 (10%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+++D   
Sbjct: 3   KASRIFCPALI-TPKNAVVKQTEQLSRSQKLLTELGLVKSGSNGTYQIMPMAQRSVDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++    + G  ++++P L    LW ++GR D    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVQSNMQQAGGQKITLPILTPTGLWKKTGRLDGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 T-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T  +  +   SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD YSFD++ E +  +
Sbjct: 122 TAMLATTSPISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYSFDVSEETAMET 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y  +  +Y R+F +L +  + + A +G +GG +SHE+  ++  GE  +            
Sbjct: 182 YTLVNAAYDRLFKQLEVPFVKVNAATGIMGGSVSHEYHYVSPVGEDNLLQCSSC------ 235

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                    +  V       S   +     RG+EV H F  G K
Sbjct: 236 --------------------GFAGNSEVVKAPASCPSCNSSDLKEVRGVEVAHTFLLGDK 275

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   + MG YGIG  RV+AA +E       + WP  +AP+ + LI 
Sbjct: 276 YSKPLGATFLNTTGKPQSLVMGCYGIGITRVIAAALEVLSSDHELRWPKLLAPYDVCLIG 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGC-------DVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
            K   +   +  E I   L  +         ++  DD  E  IG +   A  LG PL ++
Sbjct: 336 PKQGSKEQPE-AEVIENELL-LNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLTIV 393

Query: 406 VGSKF--VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           VG+K   +   K+E+     G   ++   E +   +    + +
Sbjct: 394 VGAKSARLDSPKLEVHT-SKGETYELDFSETLKLVAEHSQHKK 435


>gi|70952361|ref|XP_745354.1| threonine--tRNA ligase [Plasmodium chabaudi chabaudi]
 gi|56525650|emb|CAH82048.1| threonine--tRNA ligase, putative [Plasmodium chabaudi chabaudi]
          Length = 505

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 75/486 (15%), Positives = 141/486 (29%), Gaps = 79/486 (16%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           ++  + E  RD       L L      +   G   W   G    + +   +R+E      
Sbjct: 35  YIKFIGEGKRDHRNVGKNLNLF-FFEKETLPGSGFWFTHGANIYNKLIEFMRKEYRIRKY 93

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + S DLW  SG Y +Y   M  + +  +K     P +      IF+    SY+
Sbjct: 94  EEVITPNIFSCDLWKTSGHYQNYKNCMF-IFNIENKEWGMKPMNCPGHCLIFKQLNASYK 152

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP       +  R+E+     G+ R R F   DA+ F             +      ++
Sbjct: 153 SLPIRLADFGVLHRNEITGSLSGLTRVRRFQQDDAHIFCSLDHIKTE-VINVLQFIFYVY 211

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           +  G K   +   + P                  +     +  +F   S     +     
Sbjct: 212 NLFGFKY-DLYLSTRP-----------------PKYIGDINTWNFAEQSLKEALELANVK 253

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATFK 303
             + E   A Y    D+    L DSL    +     ++      F    K          
Sbjct: 254 WKLNEGDGAFYGPKIDI---VLRDSLNRTHQCGTVQLDFQLPIRFNLQYKNKEYGVGQET 310

Query: 304 G----------------------------------------------ADGKDHYVQMGSY 317
                                                            G D  + +   
Sbjct: 311 DSNLVNQSNKDANEKKEDSTMGNAGNNDEQNKLDGENAGNNQPGGELKKGFDRPIIIHRA 370

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +G++    A++     GK   W        + +           +  + I+  L+    
Sbjct: 371 ILGSVERFVAILVEHTSGKFPFWLSPRQAIVLPI------SDKFNEYAKYIHDVLTNNLF 424

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  D     +  +   A L  +   ++VG K +S + V ++ R     +  +++E++N 
Sbjct: 425 DVDVDISVNTLNKKIREAQLKQYNFILVVGEKELSTNTVTVRDRDNPNDQKYTIQELVNN 484

Query: 438 ASHRFS 443
                 
Sbjct: 485 FKKMLD 490


>gi|330802268|ref|XP_003289141.1| hypothetical protein DICPUDRAFT_35169 [Dictyostelium purpureum]
 gi|325080808|gb|EGC34348.1| hypothetical protein DICPUDRAFT_35169 [Dictyostelium purpureum]
          Length = 679

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 68/450 (15%), Positives = 143/450 (31%), Gaps = 54/450 (12%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           + + RD  +      L     H  S G   +LP G K  + +   +R E  R G  E+  
Sbjct: 269 KASLRDHRLIGKNQELF--FFHPFSPGSCFFLPHGTKIYNKLLNFLRSEYRRRGYQEVIT 326

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + S  LW +SG + +Y   M    + +       P +      +F    +SY+ LP  
Sbjct: 327 PNIYSQKLWEQSGHWQNYKDNMFSF-ECDHTHYSLKPMNCPGHCLMFAHRQRSYKELPMR 385

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                +  R+E      G+ R R F   DA+ F  TP+  +    +       ++     
Sbjct: 386 IADFGVLHRNESHGSLTGLTRVRRFQQDDAHIFC-TPDMIREEIAQCLDFMKFVYSVFNF 444

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +   + P       E    A+   +QV                      +   I  
Sbjct: 445 TF-HLELSTRPDSFLGDIEVWDKAENALSQVLTEFC----------------GNQWKINP 487

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           +  A Y    D+H   L D+  ++ + +   ++      F  +Y+       +      +
Sbjct: 488 KDGAFYGPKIDIH---LKDANGKSHQCATIQLDFQLPIRFNLEYNDGKKEETENQQSAVN 544

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              M    +         I   H G                  + +  +   +   +I +
Sbjct: 545 RPVMIHRALFGSVERMMAILMEHTG-----GKWPFWLSPRQCIVVSVSKAFNNHALEIQS 599

Query: 371 RLSKV------------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +L++                         I  +   A  L +   +++G +      + +
Sbjct: 600 KLNQSMVDIDVDVDISDNL----------IAKKVFEATHLQYNYIIVIGQEESDSGILSV 649

Query: 419 KHRLTGIRED--MSLEEVINYASHRFSNNR 446
           + R +  +E+  +S++++++       N +
Sbjct: 650 RERDSKSKENRKLSIDDLLSEFKLNLKNFK 679


>gi|86146905|ref|ZP_01065224.1| prolyl-tRNA synthetase [Vibrio sp. MED222]
 gi|85835357|gb|EAQ53496.1| prolyl-tRNA synthetase [Vibrio sp. MED222]
          Length = 546

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 99/212 (46%), Positives = 135/212 (63%), Gaps = 1/212 (0%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+R+E +  GA+E+ +P +Q  +LW E+GR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQEIDNAGAVEILMPVVQPFELWEETGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            +  G E+LR  DR+ +  +  PT EEV+T + R+ I SY+ LP   YQIQ KFRDE RP
Sbjct: 61  SEKMGPELLRFTDRHSRPFVLSPTAEEVVTSLVRNEISSYKQLPLNLYQIQTKFRDERRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMR+REF M DAYSFD+  EG + SY  M  +Y + F R+GL+  P+ A+SG IGG 
Sbjct: 121 RFGVMRAREFSMMDAYSFDIDKEGLEKSYQAMHDAYCKAFDRMGLEYRPVLADSGAIGGS 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            S EF VLA++GE  +       D+    E  
Sbjct: 181 GSQEFHVLAESGEDLIAF-SSESDYAANIEKA 211



 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 68/190 (35%), Positives = 110/190 (57%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A   D+ N    D     +      RGIEVGHIF  G  YS  M+    G DGK   ++M
Sbjct: 357 AQVEDLRNVVEGDLSPCGQGTIQLKRGIEVGHIFQLGNTYSKAMNCNVLGPDGKSVILEM 416

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVA+ IE +HD  GI WPD++APF+++++ +     +  ++A EK+YA L+
Sbjct: 417 GCYGIGVSRVVASAIEQNHDKFGITWPDALAPFQVAIVPMNMHKSERVKEAAEKLYAELT 476

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            +G +V +DD  E+ G  F   +L+G P  +++G + + +   E K+R TG +E ++++ 
Sbjct: 477 AMGIEVLFDDRKERPGVMFKDIELVGIPHTIVIGDRSMDEGNFEYKNRRTGDKEAIAMDT 536

Query: 434 VINYASHRFS 443
           VI + + + +
Sbjct: 537 VIEHLTAQLA 546


>gi|320165002|gb|EFW41901.1| Tarsl2 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 777

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 78/492 (15%), Positives = 149/492 (30%), Gaps = 95/492 (19%)

Query: 12  QENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +E   RD  +      L   M H +S G    LP G K +  +   IR      G  E+S
Sbjct: 321 EEAKLRDHRLIGAAQQLF--MFHPYSPGSAFMLPHGMKIISRLQEYIRLAYIHYGYQEVS 378

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLA---------------------------DRNDKA 103
            P + S +LW  SG    Y ++M  +                              +D  
Sbjct: 379 TPIVYSKELWETSGHLQHYAQDMFAVTGGLTPAAPAAGAAAGAAGHSHHHADSDASSDAT 438

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYS 162
               P +      IF+    SYR LP          R+E +    G+ R R F   DA+ 
Sbjct: 439 QALKPMNCPGHCLIFQRKHYSYRELPIRLADFSPLHRNEAKGALSGLTRVRRFHQDDAHI 498

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           F    +        +      ++ RLG     ++  + P     S E    A++      
Sbjct: 499 FCTPEQIQAE-ILNVLGFVREVYGRLGFSEFTLKLSTRPESFVGSIEQWDYAESCLKDAL 557

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                                S  ++     A Y    D+    + D++    + +   +
Sbjct: 558 QQTC----------------GSNWTLNPGDGAFYGPKIDI---TIRDAIGRQHQTATVQL 598

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           +      FG +Y       F         V +    +G++  + A++  +  G+  +W  
Sbjct: 599 DFQLPQRFGLRY-------FDANQQAHTPVMIHRAVLGSLERMFAILIENTAGRWPLW-- 649

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD------------------------ 378
                    + + + D    +   ++  +L KV                           
Sbjct: 650 ----LSPRQVAVCSVDPSVNEYAAEVCKQLEKVSLRLPGSVFEVKNNVTTDSSAATPNGS 705

Query: 379 -------VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
                  V  D    ++  +   A +  F   V+ G++  +D  + ++ R       MS 
Sbjct: 706 SSAFALQVEADLSDNRLSKKIRDAQVSQFNYIVVTGAREAADRTLNVRDRTGAQLGTMSF 765

Query: 432 EEVINYASHRFS 443
           ++ +     + +
Sbjct: 766 DKFVQLLHDQMA 777


>gi|71893938|ref|YP_279384.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
 gi|71852065|gb|AAZ44673.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
          Length = 579

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 142/437 (32%), Gaps = 35/437 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL ILQE   RD      KL L T        G   WL  G +  + +   I E     G
Sbjct: 170 FLGILQERQERDHRKIGAKLKLFT-FSSYFGHGFPVWLENGMRIYNKIRQKILEFDRNYG 228

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P     +L+  SG    Y  +M +     ++ +I  P        +F   + SY
Sbjct: 229 FKEVLTPHFGHKELYKISGHLLHYRDDMFKGLKIENEELIPRPMTCPHHIILFSQQLFSY 288

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           RNLP+   +    +R E      G+ R R   + + + F    +      + +F     +
Sbjct: 289 RNLPYRISEQSRLYRYEKSGALLGLERVRAMDLTEGHIFVSKSQIFSE-ISHLFQMISEV 347

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                ++   +              F       + + F      +          D    
Sbjct: 348 LDFFKVQIFYIS-------------FSKRDPKNKDKFFQDDQMWEQAEADLKQFLDQNKI 394

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    D    ++  +L +   +S   ++    F    K+      +F  
Sbjct: 395 NYIEKIGEAAFYGPKIDF---QVKTALNKELTISTLQLD----FLLPEKF----KISFIN 443

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              K     +   G IG      A++     G    W           I +    +   D
Sbjct: 444 EYNKKETPILIHRGLIGTYERFIALLLEQSKGNLPFW------ISPKQIIVIPVAEKHND 497

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +KI+  L  +G +   D   E+I  +   A+L     QVI+G + ++ +++  +   +
Sbjct: 498 FAQKIHKILFDLGFNSEIDLRSERISRKIREANLEKINFQVIIGDEEITKNEITYRKFGS 557

Query: 424 GIREDMSLEEVINYASH 440
                +SL + ++   +
Sbjct: 558 PELFRISLVDFVDLLKN 574


>gi|313678529|ref|YP_004056269.1| threonine--tRNA ligase [Mycoplasma bovis PG45]
 gi|312950500|gb|ADR25095.1| threonine--tRNA ligase [Mycoplasma bovis PG45]
          Length = 582

 Score =  189 bits (480), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 61/441 (13%), Positives = 136/441 (30%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD       + + T       +G   WL  G    + +  ++ +   + G
Sbjct: 171 YLALLSDRKERDHRKIGKDMKIFT-FSPLAGQGFPIWLENGMYIHNEIKNLVLKLDKKYG 229

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P   +  L+  SG    Y  +M +     ++ +I  P        ++ +   SY
Sbjct: 230 FTEVLTPHFGAELLYKTSGHLAHYKDDMFKPLLVENETLIPRPMTCPHHIIVYNTEKHSY 289

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R+LP  + +    +R E       +     ++       +  +       +M+     I 
Sbjct: 290 RDLPIRYSEQSQLYRYEKSGALTGLERVRGMLLTEGHLFVRYDQIASEVKRMYKQIKEIL 349

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               ++   +      +                 + F +    +          +D+   
Sbjct: 350 SIFNIEISYISLSLRDLNNKD-------------KYFNNDSIWNKAEVMLEKALNDMKVK 396

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
              VE   A Y    D+   ++  +L     VS   ++      F          ++   
Sbjct: 397 YKKVEGEAAFYGPKIDI---QIDTALGHEITVSTIQLDFLQPEKFD--------LSYIDK 445

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + K+   + +    IG      A++     G    W             I  +       
Sbjct: 446 NNKEVRPIMIHRGLIGTYERFVAILLEQTKGNLPFWIAPKQAT-----IIPVNLSENLKY 500

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+  +L      V  DD  E++  +   A +     Q+I+GS  ++ + V  +     
Sbjct: 501 AKKVAKKLLNSDFRVKIDDSDERLNKKIRNAQVSKSKFQLILGSNEMNSNTVSYREYGKE 560

Query: 425 IREDMSLEEVINYASHRFSNN 445
               +S+ + I       +N 
Sbjct: 561 ETTTVSINDFIKLLKKLRNNY 581


>gi|331090802|ref|ZP_08339649.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330399910|gb|EGG79569.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 653

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 152/442 (34%), Gaps = 36/442 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +   RD      ++ L T  +    +G+   +P G   +  +   + +E+ + G + 
Sbjct: 232 HLEEIKKRDHNKLGREMGLFTT-VDVIGQGLPLLMPKGAAIIQTMQRWVEDEEEKRGYVR 290

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRN---DKAMIYGPTHEEVMTDIFRSHIKSY 125
              P +   DL+V S  +  Y + M  L D +   ++     P        +++   KSY
Sbjct: 291 TKTPLMAKKDLYVISDHWGHYKEGMFVLGDEDKEGEEVFALRPMTCPFQYYVYKQSQKSY 350

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  + +    FR+E      G+ R R+F + + +   +TPE  +  +          
Sbjct: 351 RDLPCRYGETSTLFRNEDSGEMHGLTRVRQFTISEGH-LVITPEQVEDEFRGCVDLAKYC 409

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              LG++             D+++   +       +   +++  D          + +  
Sbjct: 410 LTTLGVEE------------DVTYRLSLADPDNMDKYLGTREMWDEVEDIMRKMLNHLEI 457

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             +      A Y    D+  + ++      K  +   I            +     +F  
Sbjct: 458 DYTEETGEAAFYGPKLDIQAKNVY-----GKEDTMITI------QLDMFLAERFDMSFVD 506

Query: 305 ADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG+     +     +G      A +    +    ++P  + P ++ ++ I    +   D
Sbjct: 507 KDGEKKRPYIIHRTAMGCYERTLAWLI---EKYAGLFPTWLCPEQVRVLPI---SEKYHD 560

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G     DD  E+IG +     L   P  ++VG+K   +  V ++ R  
Sbjct: 561 YAHQVLGELRANGIKCTVDDRAEKIGYKIRETRLDKVPYMLVVGAKEEEEKVVSVRSRFL 620

Query: 424 GIREDMSLEEVINYASHRFSNN 445
           G     SL+  I          
Sbjct: 621 GDEGQKSLDTFIADICKEIRTK 642


>gi|291320287|ref|YP_003515549.1| threonyl tRNA synthetase [Mycoplasma agalactiae]
 gi|290752620|emb|CBH40593.1| Threonyl tRNA synthetase [Mycoplasma agalactiae]
          Length = 582

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 61/441 (13%), Positives = 136/441 (30%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD       + + T       +G   WL  G    + +  ++ +   + G
Sbjct: 171 YLALLADRKERDHRKIGKDMKIFT-FSPLAGQGFPIWLENGMYIHNEIKNLVLKLDKKYG 229

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P   +  L+  SG    Y  +M +     ++ +I  P        ++ +   SY
Sbjct: 230 FTEVLTPHFGAELLYKTSGHLAHYKDDMFKPLLVENETLIPRPMTCPHHIIVYNTEKHSY 289

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R+LP  + +    +R E       +     ++       +  +       +M+     I 
Sbjct: 290 RDLPIRYSEQSQLYRYEKSGALTGLERVRGMLLTEGHLFVRYDQIASEVKRMYKQIKEIL 349

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               ++   +                        + F +    +          +D+   
Sbjct: 350 SIFNIEISYISLSLRDSNNKD-------------KYFNNDSIWNKAESMLEKALNDMKVK 396

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
              VE   A Y    D+   ++  +L     VS   ++      F          ++   
Sbjct: 397 YKKVEGEAAFYGPKIDI---QIDTALGHEITVSTIQLDFLQPEKFD--------LSYIDK 445

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + K+   + +    IG      A++     G    W          +  I  +       
Sbjct: 446 NNKEVRPIMIHRGLIGTYERFVAILLEQTKGNLPFW-----IAPKQVTIIPVNLSENLSY 500

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+  +L      V  DD  E++  +   A +     Q+I+GS  ++ + V  +     
Sbjct: 501 AKKVAKKLLNSDFRVKIDDSDERLNKKIRNAQVSKSKFQLILGSNEMNSNTVSYREYGKE 560

Query: 425 IREDMSLEEVINYASHRFSNN 445
               +S+ + I       +N 
Sbjct: 561 ETTTVSINDFIKLLKKLRNNY 581


>gi|126138470|ref|XP_001385758.1| mitochondrial threonyl tRNA synthetase [Scheffersomyces stipitis
           CBS 6054]
 gi|126093036|gb|ABN67729.1| mitochondrial threonyl tRNA synthetase [Scheffersomyces stipitis
           CBS 6054]
          Length = 449

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 75/459 (16%), Positives = 141/459 (30%), Gaps = 68/459 (14%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           +  S+K +L T      + G   +LP G +  + +   ++ +Q + G  E+  P +  + 
Sbjct: 18  QTISNKQLLYTT--DPLTPGSIFFLPHGTRIFNKLVQFMKNQQTKYGFQEVITPLIYKSK 75

Query: 79  LWVESGRYDSYGKEMLR-------------------LADRNDKAMIYGPTHEEVMTDIFR 119
           LW  SG + +Y  +M +                               P +      IF 
Sbjct: 76  LWETSGHWQNYKDDMFKVVGNDVSKEHDIHNEQYSHDKSEGLHEYGLKPMNCPGHCLIFS 135

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +SY  LP          R+E      G+ R R F   D + F    + ++   +   
Sbjct: 136 KFDRSYNELPIRLSDFSSLHRNEASGALSGLTRVRRFHQDDGHIFCEMGQINQE-IHNTI 194

Query: 179 VSYLRIFHRL--GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                 +     G K I     + P       +F+   +T        K+ +D       
Sbjct: 195 NLIKGTYKVFGIGEKDIEYFLSTRP-----EEKFMGDIETWNMAEEQLKNVLDTAAGQ-- 247

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                      I E   A Y    DV    L D+  +  +V    ++    F    ++ L
Sbjct: 248 -------GNWQINEGGGAFYGPKIDVL---LTDAFNKKHQVGTIQLD----FQLPARFDL 293

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              A        +  + +     G++    A++                        I  
Sbjct: 294 KYVAE--DGTRDNQPIMVHRAVFGSLERFFAILLDH------YQGKWPFWINPRQAVIVP 345

Query: 357 HDQVCRDACEKIYARLS--------------KVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            +    +A EK++  LS                   V  D   E +GS+   A   G+  
Sbjct: 346 VNASHVEAAEKLHKMLSGDIINSVNDISPITGYNFYVDVDRRAETVGSRIKDAVQKGYSY 405

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +++G K + +  V I+ R +    ++  EE+       
Sbjct: 406 IIMIGDKDIKNGTVAIRTRDSRQIVNLKPEEIYEKFVEL 444


>gi|50543472|ref|XP_499902.1| YALI0A09427p [Yarrowia lipolytica]
 gi|49645767|emb|CAG83829.1| YALI0A09427p [Yarrowia lipolytica]
          Length = 461

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 75/429 (17%), Positives = 151/429 (35%), Gaps = 50/429 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I   S G   +LP GQ+    +   +R +    G  E+S P +    LW +SG ++ +  
Sbjct: 59  ISPESPGSAFFLPHGQRIYSRLGEFMRLQLRVFGFQEISSPIMYKNSLWKQSGHWEKFQD 118

Query: 92  EMLRLADRN-----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           +M R+   +     ++     P +      +F S  +SYR LP  +       R+E    
Sbjct: 119 DMFRVQPGHEETSVEEEFSLKPMNCPGHCLLFNSLKRSYRELPLRYSDFSPLHRNEASGA 178

Query: 147 -FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+ R R F   D + F  TPE  +   ++      + ++  GL+   +   + P    
Sbjct: 179 LSGLTRVRRFHQDDGHIFC-TPEQVESEISRALKLVQQTYNTFGLEISRVVLSTRPETFI 237

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E    A+   T V  S                       +     A Y    D+   
Sbjct: 238 GDIEQWNDAEKALTSVLDSWSV--------------SKGKWELNAGDGAFYGPKIDIL-- 281

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + D   +  + +   ++    F    ++ L     F  ++     V +     G++   
Sbjct: 282 -VKDKHGKEHQTATTQLD----FQLPERFQLKY---FDASETAQRPVMVHRAVYGSLERF 333

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------------L 372
            A++    D     WP  ++P +  ++ +    +   +  EK+ A+             L
Sbjct: 334 LAILI---DHYEGKWPLWLSPRQCMVLPVG---EAQNEFAEKVAAQLSGLPSITDQSTPL 387

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           S        D   E +G +   A   G+    ++G K + + KV ++      R+ ++++
Sbjct: 388 SASTLFCDVDTRSETLGQKIKQARNEGYSYIAVIGDKEMQEGKVTVQKPGKKDRQLLTVD 447

Query: 433 EVINYASHR 441
           E  ++    
Sbjct: 448 EARDFFHKE 456


>gi|167589833|ref|ZP_02382221.1| prolyl-tRNA synthetase [Burkholderia ubonensis Bu]
          Length = 382

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 118/436 (27%), Positives = 185/436 (42%), Gaps = 64/436 (14%)

Query: 1   MRRSKYFLP--ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           M+ S+ F      +++    E+    L  +    HQ + G+YSW+ LG +A   V  ++R
Sbjct: 1   MKFSQQFFSNSFFEQDNAKLELTD--LARKACFFHQDAAGLYSWMSLGLRAQRCVERVVR 58

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E +R G  E+ +  LQ ADLW +SGR D YG E++RL +R  +    G T EE+  ++ 
Sbjct: 59  DEMDRAGFCEVQMSLLQDADLWRQSGRLDIYGDELMRLTNRAGRLFCLGATCEELAANMV 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           R+H  +  +L    YQ   K+RDELR R G++R+REF+MKDAY+F  T +G++ +Y  + 
Sbjct: 119 RTHY-NRTDLSLGLYQFGNKYRDELRTRGGLVRAREFIMKDAYAFHATDDGARAAYETVR 177

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +Y RIF RLGL +I    ++G IGG  S EF V+++ GE +    +         E   
Sbjct: 178 DAYRRIFGRLGLDAIAKSGDNGEIGGRSSEEFHVVSELGEDEADGRRSL-------ECAH 230

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D+    S V                                                 
Sbjct: 231 IFDLGDRYSKVLGLVNAKGEFV-------------------------------------- 252

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                   G           +   R          D        +   F + L  I    
Sbjct: 253 ------RMGCFGVGISRLVMLLLDRQRDGRGFWGSD--------AFNTFDVVLTVIDWER 298

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           Q C+DA +++   L   G  V  DD   Q G + A A+L+    +V+V  K ++  + E 
Sbjct: 299 QACQDAAQRLQRDLQAAGISVLVDDRVVQAGKKLADAELIACRQRVVVSRKAIASGRFEW 358

Query: 419 KHRLTGIREDMSLEEV 434
             R T   E +S E++
Sbjct: 359 MDRRTLACESVSAEDL 374


>gi|294901580|ref|XP_002777422.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239885058|gb|EER09238.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 836

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 74/477 (15%), Positives = 143/477 (29%), Gaps = 77/477 (16%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            +   RD  +   K  L     H   S G   W   G    + +   IR E    G  E+
Sbjct: 341 EEAMKRDHRLIGKKQDLF--FFHPTMSPGSCFWTSHGAVIYNKLVDFIRREYRLRGFDEV 398

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + S  L+ +SG   +Y   M    +   +     P +      IF   ++SY+ LP
Sbjct: 399 ITPNIFSEALFQQSGHCGNYKDNM-YSMNIEGETWYLKPMNCPGHCMIFDQKVRSYKELP 457

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                  +  R+EL     G+ R R F   DA+ F    +               +++  
Sbjct: 458 IRMADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCRPDQVQDE-ITHALEFLKFVYNTF 516

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G                   +F V   T   +   S+   D          +       +
Sbjct: 517 G------------------FDFSVCLSTRPKKAIGSRAIWDTAENGLKNALEACGIDYDL 558

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSL---------- 296
                A Y    D+    L D+L    +     ++      F    + +           
Sbjct: 559 NPGDGAFYGPKIDIR---LRDALNRYHQCGTIQLDFNLPIRFNLQYRTAETEESGDAHSV 615

Query: 297 ----------------PMSATFKG---------------ADGKDHYVQMGSYGIGAMRVV 325
                             SA  +                  G +  V +    +G++   
Sbjct: 616 SEAANSPADDHQEKAGQNSAAVENVGSKAKADEITLGELKHGFERPVMVHRAILGSIERC 675

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A++    +  G  WP  ++P ++ ++ +        D  + +  +L ++G +   D   
Sbjct: 676 TAILT---EHYGGKWPFWLSPRQVMVVPVSDK---YSDYADYLRKQLVRLGYEADADLST 729

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMSLEEVINYASHR 441
             +  +   A +  +    +VG K  +D  V ++ R T        + E+++     
Sbjct: 730 RTMNKKVREAQVAAYNYIAVVGEKEQNDLTVTLRKRDTVRPLGTFGIAEMLDMFEKE 786


>gi|239631344|ref|ZP_04674375.1| prolyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239525809|gb|EEQ64810.1| prolyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 570

 Score =  189 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 109/276 (39%), Positives = 156/276 (56%), Gaps = 7/276 (2%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            F+P  +E P  AE  SHK+MLR+G + Q   G+Y++LPL ++ L  + AII +E  +  
Sbjct: 1   MFIPTEKEVPSSAEAKSHKMMLRSGFVRQIQAGVYAYLPLAERVLARIEAIIDDEMTKID 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A++M +P L  A+LW ESGRY++YG  + +L +R D+ MI GPTHEE  TD+ R+ +KSY
Sbjct: 61  AVKMKMPVLLPAELWEESGRYETYGPNLFKLKNRQDRKMILGPTHEETFTDLVRNELKSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + +P   YQIQ KFRDE RPR+GV+R REF+M+DAYSF    +     Y +M  +Y  IF
Sbjct: 121 KRMPLVLYQIQDKFRDEDRPRYGVLRGREFIMQDAYSFTSNDQDLDTIYRQMEHAYTNIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
            RLGL+   +  + G +GG  S EF  +AD GE  +  S    D+    E      +   
Sbjct: 181 DRLGLRYRSIIGDGGAMGGKDSKEFSAIADIGEDTIVYSDS-SDYAANLE--MATSMALP 237

Query: 246 NSIVEQWTAPYAAT----SDVHNEKLFDSLPENKRV 277
              VE+  A           +     F  +PE K +
Sbjct: 238 KQRVEEQAALEPVDTKDAKTIAEVAEFLKVPEKKLI 273



 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 3/182 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+      +  P+ + V    RGIE+GHIF  GT+Y+  M A F   +G+   + MGSY
Sbjct: 377 ADIRFVTEGEVSPDGQGVLKFTRGIEIGHIFKLGTRYTETMGANFLDENGRSQPIIMGSY 436

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A+ E   D  G++WP ++APF I LI +    +  +     I   L   G 
Sbjct: 437 GIGVSRLLSAIAEQQADEHGLVWPTTIAPFDIHLIPVNLKREEQKSLTASIETMLEDAGY 496

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  DD  E+ G +FA +DL+G PL+V VG K V +  VE+K R TG   ++  EE+I+ 
Sbjct: 497 SVLVDDRNERPGVKFADSDLIGVPLRVTVGKKAVDE-IVELKLRKTGETIEVKKEELISS 555

Query: 438 AS 439
             
Sbjct: 556 IK 557


>gi|49168658|emb|CAE02700.1| putative threonyl tRNA synthase [Yarrowia lipolytica]
          Length = 461

 Score =  189 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 75/429 (17%), Positives = 151/429 (35%), Gaps = 50/429 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I   S G   +LP GQ+    +   +R +    G  E+S P +    LW +SG ++ +  
Sbjct: 59  ISPESPGSAFFLPHGQRIYSRLGEFMRLQLRVFGFQEISSPIMYKNSLWKQSGHWEKFQD 118

Query: 92  EMLRLADRN-----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           +M R+   +     ++     P +      +F S  +SYR LP  +       R+E    
Sbjct: 119 DMFRVQPGHEETSVEEEFSLKPMNCPGHCLLFNSLKRSYRELPLRYSDFSPLHRNEASGA 178

Query: 147 -FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+ R R F   D + F  TPE  +   ++      + ++  GL+   +   + P    
Sbjct: 179 LIGLTRVRRFHQDDGHIFC-TPEQVESEISRALKLVQQTYNTFGLEISRVVLSTRPETFI 237

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E    A+   T V  S                       +     A Y    D+   
Sbjct: 238 GDIEQWNDAEKALTSVLDSWSV--------------SKGKWELNAGDGAFYGPKIDIL-- 281

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + D   +  + +   ++    F    ++ L     F  ++     V +     G++   
Sbjct: 282 -VKDKHGKEHQTATTQLD----FQLPERFQLKY---FDASETAQRPVMVHRAVYGSLERF 333

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------------L 372
            A++    D     WP  ++P +  ++ +    +   +  EK+ A+             L
Sbjct: 334 LAILI---DHYEGKWPLWLSPRQCMVLPVG---EAQNEFAEKVAAQLSGLPSITDQSTPL 387

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           S        D   E +G +   A   G+    ++G K + + KV ++      R+ ++++
Sbjct: 388 SASTLFCDVDTRSETLGQKIKQARNEGYSYIAVIGDKEMQEGKVTVQKPGKKDRQLLTVD 447

Query: 433 EVINYASHR 441
           E  ++    
Sbjct: 448 EARDFFHKE 456


>gi|149030652|gb|EDL85689.1| threonyl-tRNA synthetase-like 1, isoform CRA_a [Rattus norvegicus]
          Length = 617

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 141/438 (32%), Gaps = 55/438 (12%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS 88
               H+ S G   +LP G +  + + A IR E  R G  E+  PTL S  LW +SG ++ 
Sbjct: 210 LFFFHELSPGSCFFLPRGTRIYNALVAFIRAEYARRGFSEVKTPTLFSTKLWEQSGHWEH 269

Query: 89  YGKEMLRLAD----------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           Y   M  L                       +   P +      +F    +S+R LP   
Sbjct: 270 YRAHMFSLKPPGTDGVDSSQSGHPARCPKDTLALKPMNCPAHCLMFAHRPRSWRELPVRL 329

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               +  R E      G+ R   F   DA+ F   P   +            ++  LG  
Sbjct: 330 ADFGVLHRAEASGSLGGLTRLWRFQQDDAHIFCA-PSQLEAEIRGCLDFLRSVYSVLGFS 388

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                             F +   T            D          ++     ++   
Sbjct: 389 ------------------FHLALSTRPPGFLGEPHLWDQAEKVLQQALEEFGEPWNLNPG 430

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDH 310
             A Y    DVH   L D+L    +     ++    F    ++       +KG  G  + 
Sbjct: 431 DGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPLRFD----LQYKGPAGAPEC 479

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  +  V+    +  G  WP  ++PF++ +I ++   +   D   ++  
Sbjct: 480 PVLIHRAVLGSVERLLGVLA---ESCGGRWPLWLSPFQVVVIPVRTEQE---DYARQVQQ 533

Query: 371 RLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            L   G     D D G  +  +   A L  +  Q +VG +  S   V ++ R      + 
Sbjct: 534 CLQAAGLVSDLDADCGLTLSRRVRRAQLAHYNFQFVVGQREQSQMSVNVRTRDNRQLGER 593

Query: 430 SLEEVINYASHRFSNNRP 447
            L E +           P
Sbjct: 594 GLAESVQRLLELQDARVP 611


>gi|54020620|ref|YP_116116.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
 gi|53987793|gb|AAV27994.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
          Length = 579

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 139/437 (31%), Gaps = 35/437 (8%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           FL ILQE   RD      KL L T        G   WL  G +  + +   I E     G
Sbjct: 170 FLGILQERQERDHRKIGAKLKLFT-FSSYFGHGFPVWLENGMRIYNKIRQKILEFDRNYG 228

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P     +L+  SG    Y  +M +     ++ +I  P        +F   + SY
Sbjct: 229 FKEVLTPHFGHKELYKISGHLLHYRDDMFKGLKIENEELIPRPMTCPHHIILFSQQLFSY 288

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           RNLP+   +    +R E      G+ R R   + + + F    +      + +F     +
Sbjct: 289 RNLPYRISEQSRLYRYEKSGALLGLERVRAMDLTEGHIFVSKSQIFSE-ISHLFQMISEV 347

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                ++   +              F       + + F      D          +    
Sbjct: 348 LDFFKVQIFYIS-------------FSKRDPKNKDKFFQDDQMWDQAEADLKQFLEQNKI 394

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    D    ++  +L +   +S   ++    F            +F  
Sbjct: 395 NYIEKIGEAAFYGPKIDF---QVKTALNKELTISTLQLD----FLLP----KKFKISFIN 443

Query: 305 ADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              K     +   G IG      A++     G    W           I +    +   D
Sbjct: 444 EHNKKETPILIHRGLIGTYERFIALLLEQSKGNLPFW------ISPKQIIVIPVAEKHND 497

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +KI+  L  +G +   D   E+I  +   A+L     QVI+G + ++ +++  +   +
Sbjct: 498 FAQKIHKILFDLGFNSEIDLRSERISRKIREANLEKINFQVIIGDEEITKNEITYRKFGS 557

Query: 424 GIREDMSLEEVINYASH 440
                +SL + ++    
Sbjct: 558 PELFRISLVDFVDLLKS 574


>gi|317054829|ref|YP_004103296.1| prolyl-tRNA synthetase [Ruminococcus albus 7]
 gi|315447098|gb|ADU20662.1| prolyl-tRNA synthetase [Ruminococcus albus 7]
          Length = 480

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 152/415 (36%), Gaps = 66/415 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  I+       G   + +P      L   E    + +  E+  +
Sbjct: 39  GCMVIRPYGYAIWENIQKILDSRFKALGHENVCMPMFIPESLLQKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                ++ +  +   PT E +  + + + + SYR+LP  + Q     R E   R   +RS
Sbjct: 99  THGGSEKLEDRLCVRPTSETLFCEHYANIVHSYRDLPKLYNQWVSVVRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   TPE +     +M   Y     +                         
Sbjct: 158 REFLWQEGHTIHETPEEAIEETERMLNCYADFCEK------------------------- 192

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             D     V   K   D    +E T                  YA  + +H+        
Sbjct: 193 --DLAMPVVKGRKTDSDKFAGAEAT------------------YAIEALMHD-------- 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G   YFG  ++      F G D K  +    S+G+   R++ A+I + 
Sbjct: 225 ------GKALQAGTSHYFGDGFAKAFGIQFTGRDNKLAFPHQTSWGV-TTRLIGAIIMTH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P +VAP +  ++ ++   +   +   ++Y +L   G  V  DD  +  G +F
Sbjct: 278 GDDNGLVLPPAVAPIQAVIVPVQQFKEGVLEKANEVYEQLKAAGIRVKLDDSDQSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           A  ++ G P+++ +G K + + +  I  R    +    L E++   + +    R 
Sbjct: 338 AEYEMKGVPVRIELGPKDIENGQCVIVTRHDREKTFTPLTELVETVNAKLEAVRE 392


>gi|294948976|ref|XP_002785990.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239900098|gb|EER17786.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 836

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/477 (15%), Positives = 143/477 (29%), Gaps = 77/477 (16%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            +   RD  +   K  L     H   S G   W   G    + +   IR E    G  E+
Sbjct: 341 EEAMKRDHRLIGKKQDLF--FFHPTMSPGSCFWTSHGAVIYNKLVDFIRREYRLRGFDEV 398

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + S  L+ +SG   +Y   M    +   +     P +      IF   ++SY+ LP
Sbjct: 399 ITPNIFSEALFQQSGHCGNYKDNM-YSMNIEGETWYLKPMNCPGHCMIFDQKVRSYKELP 457

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                  +  R+EL     G+ R R F   DA+ F    +               +++  
Sbjct: 458 IRMADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCRPDQVQDE-ITHALEFLKFVYNTF 516

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G                   +F V   T   +   S+   D          +       +
Sbjct: 517 G------------------FDFSVCLSTRPKKAIGSRAIWDTAENGLKNALEACGIDYDL 558

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSL---------- 296
                A Y    D+    L D+L    +     ++      F    + +           
Sbjct: 559 NPGDGAFYGPKIDIR---LRDALNRYHQCGTIQLDFNLPIRFNLQYRTAETEESGDVHSV 615

Query: 297 ----------------PMSATFKG---------------ADGKDHYVQMGSYGIGAMRVV 325
                             SA  +                  G +  V +    +G++   
Sbjct: 616 SEAANSPADDHQEKAGQNSAAVENVGSKAKADEITLGELKHGFERPVMVHRAILGSIERC 675

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A++    +  G  WP  ++P ++ ++ +        D  + +  +L ++G +   D   
Sbjct: 676 TAILT---EHYGGKWPFWLSPRQVMVVPVSDK---YSDYADYLRKQLVRLGYEADADLST 729

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMSLEEVINYASHR 441
             +  +   A +  +    +VG K  +D  V ++ R +        + E+++     
Sbjct: 730 RTMNKKVREAQVAAYNYIAVVGEKEQNDLTVTLRKRDSVRPLGTFGIAEMLDMFEKE 786


>gi|159489562|ref|XP_001702766.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280788|gb|EDP06545.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 579

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/431 (14%), Positives = 138/431 (32%), Gaps = 44/431 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            +   RD      +L L +  I +    G+  W P G      + +  +E   + G   +
Sbjct: 182 EEAAKRDHRKLGAELNLFS--IQESSGGGLVYWHPPGAMVRHLIESFWKELHLQRGYQLV 239

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P +        SG        +       D+     P +      +++    SYR+LP
Sbjct: 240 YSPHIA-----KVSGACVCVCVCVCVCVCVEDETYQLRPMNCPFHVSVYKDGYYSYRDLP 294

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               ++   +R E      G+ R R F   DA+ F L  + +      +      I    
Sbjct: 295 LRLAELGTVYRYERSGTMHGLFRVRGFTQDDAHIFCLPNQITTE-IKGVLDLVEEILGTF 353

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G     +   + P     S E    A+                  +     +       +
Sbjct: 354 GFNDYEVNLSTRPEKSVGSDEIWTTAEA-----------------ALVEALNAKGWKYQV 396

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    D+   K+ D++    + S   ++    F    ++ +     F  A  K
Sbjct: 397 DAGGGAFYGPKIDI---KIRDAIGRKWQCSTVQLD----FNLPERFDMHY---FDDAAAK 446

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              + +     G++     ++    +     +P  +AP ++ L+ +  +     +    +
Sbjct: 447 QRPIMIHRAIFGSLERFFGILI---ENYMGAFPLWLAPVQVRLLTVNDN---LAEYAHGV 500

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A++ K G  V        I      A+    P+  +VG+K    + + ++         
Sbjct: 501 AAQMRKAGVRVEV-VGQASIAKLIRNAEKAKTPVICVVGNKEAESNSLAVRLYGGKELGA 559

Query: 429 MSLEEVINYAS 439
           + +++VI+  +
Sbjct: 560 LPVQDVISRVA 570


>gi|260773310|ref|ZP_05882226.1| prolyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
 gi|260612449|gb|EEX37652.1| prolyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
          Length = 548

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 98/212 (46%), Positives = 135/212 (63%), Gaps = 1/212 (0%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+R+E +  GAIE  +P +Q  +LW E+GR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQEIDNAGAIETLMPVVQPFELWEETGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            +  G E+LR  DR+ +  +  PT EEV+T + R+ + SY+ LP   YQIQ KFRDE RP
Sbjct: 61  SEKMGPELLRFTDRHTRPFVLSPTAEEVITSLVRNEVSSYKQLPLNLYQIQTKFRDERRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMR+REF M DAYSFD+  +G + SY  M  +Y + F R+GL   P+ A++G IGG+
Sbjct: 121 RFGVMRAREFSMMDAYSFDIDKDGLEKSYQAMHDAYCKAFDRMGLDYRPVLADTGAIGGN 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            SHEF VLA++GE  +       D+    E  
Sbjct: 181 GSHEFHVLAESGE-DIIAFSTESDYAANIEKA 211



 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 107/189 (56%), Gaps = 3/189 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           A   D+ N    D     +   +  RGIEVGHIF  GT YS  M+     ++GK   ++M
Sbjct: 357 AKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKMNCGVLDSNGKHTILEM 416

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVA+ IE +HD  GIIWPD++APF+++++ +     +  + A E +YA L+
Sbjct: 417 GCYGIGVSRVVASAIEQNHDKYGIIWPDALAPFQVAIVPMNMHKSERVQQAAETLYAELT 476

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E KHR +G +  + +  
Sbjct: 477 AAGIEVLFDDRKERPGVMFSDMELIGIPHTIIIGDRSMDEGNFEYKHRRSGEKSAVPMAN 536

Query: 434 VINYASHRF 442
           ++++   + 
Sbjct: 537 MVSFIHEQL 545


>gi|125980520|ref|XP_001354284.1| GA11463 [Drosophila pseudoobscura pseudoobscura]
 gi|54642590|gb|EAL31337.1| GA11463 [Drosophila pseudoobscura pseudoobscura]
          Length = 462

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 139/465 (29%), Positives = 226/465 (48%), Gaps = 42/465 (9%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+++D   
Sbjct: 3   KASRLFWPAL-VTPKNAVVKQTEQLSRSQKLLTELGLVKSGSNGTYQIMPIAQRSVDKFI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            ++     R G  ++S+P L    LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVDGNMKRAGGQKISLPILTPTGLWKKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 T-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T  +  +   SYR +P   YQI  KFRDEL+ RFG+MR++EFLMKD Y+FD++ E ++ +
Sbjct: 122 TAMLATTAPISYRQMPLRLYQIGPKFRDELKSRFGLMRAKEFLMKDMYTFDVSEETARGT 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R+F +L +  + + A +G +GG LSHE+  ++  GE  +        +   
Sbjct: 182 YSVVSEAYDRLFKQLEVPFVKVNAATGMMGGSLSHEYHYVSPVGEDTLLQCSSC-GYAGN 240

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           +E         L+S VE  T                S   +     RG+EV H F  G K
Sbjct: 241 AE--------VLDSKVEAST-------------DCPSCHSSHLSQVRGVEVAHTFLLGEK 279

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   + MG YGIG  RV+A+ +E     + + WP  +AP+ + LI 
Sbjct: 280 YSKPLGATFLNTSGKPQSLVMGCYGIGITRVLASALEVLSTEQELRWPKLLAPYDVCLIG 339

Query: 354 IKAHDQVCRDACEKIYARLSKV------GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIV 406
            K   +  +   E I   L +         ++  DD  E  IG +   A  LG PL ++V
Sbjct: 340 PKQGSKEQQP-AEVIENELLQHIGKICGDQELLHDDRKELTIGKRLLDAKRLGHPLTIVV 398

Query: 407 GSKFV--SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           G+  V     K+E+ H   G + ++ + + +   +      + +L
Sbjct: 399 GATAVQQEAPKLEL-HVSGGEKMELEINDALKLVAEYSRQKKSLL 442


>gi|312139298|ref|YP_004006634.1| prolyl-tRNA ligase pros [Rhodococcus equi 103S]
 gi|311888637|emb|CBH47949.1| prolyl-tRNA ligase ProS [Rhodococcus equi 103S]
          Length = 581

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 132/429 (30%), Positives = 191/429 (44%), Gaps = 38/429 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ASHKL++R G + + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RMSHLFLRTLRDDPADAEVASHKLLVRAGYVRRIAPGVYSWLPLGLRVLREVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+ +P L   D +  S R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 64  NAMGAQEILLPALLPRDPYETSNRWTEYGAGLFRLKDRKGNDMMLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQ+Q K+RDE RPR G++R REF+MKD+YSFDLT EG   SY     +Y
Sbjct: 124 YNSYKDFPVTLYQVQTKYRDEERPRAGILRGREFVMKDSYSFDLTDEGLTASYQAHRDTY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFD 240
            RI  RLG+K + + A SG +GG  S EF+  ++ GE     C +      + +  T   
Sbjct: 184 ERILARLGVKYVIVSATSGAMGGSASEEFLAESEIGEDTYVRCLESGYAANVEAVKTLAP 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   V     P A   D  + +  D+L E     A G ++G               
Sbjct: 244 A------PVPFDGLPPAEVRDTPDTETIDTLVE----WANGADLGR-------------- 279

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T   AD   + +       G   ++   I    D +        +      + +   D  
Sbjct: 280 TVTAADTLKNIMVKTRVPGGEWELL--AIGIPGDREVDEKRLEASLEPAEYVLLTETDFR 337

Query: 361 CRDACEKIY---ARLSKVGCDVFWDDM--GEQIGSQFAVADLLGFPLQ-VIVGSKFVSDS 414
                 K Y     L + G     D         S    AD  G     ++ G  F  D 
Sbjct: 338 NNPFLVKGYIGPKALQENGVRYLVDPRVVDGT--SWITGADEEGKHYVGLVAGRDFTPDG 395

Query: 415 KV---EIKH 420
            +   E++ 
Sbjct: 396 TIEAAEVRD 404



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 97/189 (51%), Gaps = 4/189 (2%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     V+ARGIEVGH+F  G KY+        G +GK     MG
Sbjct: 395 GTIEAAEVRDGDPSPDGAGALVAARGIEVGHVFQLGRKYTDVFGVDVLGENGKPVRPTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA + E  HD KG+ WP  V+PF + L  I   D   R+  E + A L K 
Sbjct: 455 SYGIGVSRLVAVIAEQHHDDKGLRWPSEVSPFDVHL-VIANKDDAAREGAEALAAELDKA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             DV +DD     G +F  ++L+G PL V+VG +  ++  VE++ R TG   ++ ++  +
Sbjct: 514 RVDVLFDDRKASPGVKFKDSELIGVPLVVVVG-RGFAEGNVELRDRFTGESREVPVDAAL 572

Query: 436 NYASHRFSN 444
           +       +
Sbjct: 573 DEILTAVRS 581


>gi|253744023|gb|EET00284.1| Threonyl-tRNA synthetase [Giardia intestinalis ATCC 50581]
          Length = 695

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/457 (17%), Positives = 156/457 (34%), Gaps = 52/457 (11%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           + +L+E  R D    + ++ L   M H+++ G   ++  G +    + A IRE  +    
Sbjct: 270 IELLEEAKRRDHRNLAKEMDLF--MTHKYAPGAPMFMNNGTRIYRKLEAFIRELLHEFDY 327

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
            E+  PT  + DLW  SG    Y + M      ++ D      P +      +++SH  S
Sbjct: 328 EEVMTPTFLNTDLWGISGHLQHYKENMFLLERKEKTDPQYGLKPMNCPCHCLLYKSHHHS 387

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
            + LP    +  +  R+EL     G+ R   F   DA+ F    +  +     +     R
Sbjct: 388 VQELPIRMAEFGVVHRNELSGALSGLTRVVRFEQDDAHIFCTVDQIEQEM-TGLIEFIKR 446

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G+                   F +       +   S +  D    +      +  
Sbjct: 447 VYTPFGIA------------------FALSLSLRPEKKMGSDELWDRAEGTLRKVLTNTG 488

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y    DVH   L D+L    +     ++    F   +K    +  +  
Sbjct: 489 LDFKENPGDGAFYGPKIDVH---LTDALGRQHQCGTIQLD----FNLPSKERFDLLYSVY 541

Query: 304 GAD----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                    +H V +    +G++    A++  +  G+   W          +I I  H +
Sbjct: 542 DEKTTSVKYEHPVMIHRAILGSVERFMAILIENTGGRFPFW-----ISPRQIIVIPLHGE 596

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 + +  R    G  V  D   E++  + AVA    +   ++VG++      V + 
Sbjct: 597 EIATYAKTVRERYHSKGYYVDIDMSPEKMEKKIAVAWSKKYNFIMVVGAQEKETGSVALS 656

Query: 420 HR----------LTGIREDMSLEEVINYASHRFSNNR 446
            R              R+ ++LEE  +      +NNR
Sbjct: 657 GRTLSAHIGEKDNQRARKVLTLEE-TDALLAELTNNR 692


>gi|194210848|ref|XP_001916146.1| PREDICTED: similar to threonyl-tRNA synthetase 2, mitochondrial
           [Equus caballus]
          Length = 667

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/438 (19%), Positives = 143/438 (32%), Gaps = 56/438 (12%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS 88
               H+ S G   +LP G +  + + A IR E +R G  E+  PTL S  LW  SG ++ 
Sbjct: 261 LFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYSRRGFSEVKTPTLFSTKLWELSGHWEH 320

Query: 89  YGKEML----------------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           Y ++M                          +   P +      +F    +S+R LP   
Sbjct: 321 YQEDMFALQPPGSDRPTGSQSDHSTSHPTDTLALKPMNCPAHCLMFAHRPRSWRELPLRL 380

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
                  R E+     G+ R R F   DA+ F   P+  +            I+  LG  
Sbjct: 381 ADFG-LHRAEVSGSLGGLTRLRRFQQDDAHIFCA-PDQLEAEIRGCLDFLRSIYAVLGFS 438

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  + P G                         D          ++      +   
Sbjct: 439 FRLA-LSTRPSGF-----------------LGEPCLWDQAEQVLQQALEEFGEPWDLNPG 480

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DH 310
             A Y    DVH   L D+L  + +     ++    F    ++       +KG  G  +H
Sbjct: 481 DGAFYGPKIDVH---LHDALGRSHQCGTIQLD----FQLPLRFD----LQYKGQAGALEH 529

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  +  ++    +  G  WP  ++PF++ +I +    +       +   
Sbjct: 530 PVLIHRAVLGSVERMLGMLA---ESCGGKWPLWLSPFQVVVIPVGTEQEG---YAREAQR 583

Query: 371 RLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            L   G     D D G  +  +   A L  +  Q +VG K  S   V I+ R      + 
Sbjct: 584 SLQAAGLVCDLDADSGLTLSRRVRRAQLAHYNFQFVVGQKEQSKRTVNIRTRDNRRLGEW 643

Query: 430 SLEEVINYASHRFSNNRP 447
            L E +       +   P
Sbjct: 644 DLTEAVQRLLELQNTRVP 661


>gi|50286281|ref|XP_445569.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524874|emb|CAG58480.1| unnamed protein product [Candida glabrata]
          Length = 462

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 146/439 (33%), Gaps = 43/439 (9%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRY 86
           R  +  Q + G   +LP G K  + + + ++ +Q    G  E+  P +    LW +SG +
Sbjct: 47  RLFITDQITPGSAFFLPNGTKIYNKLVSFMKTQQKHLFGFKEVITPLIYRKSLWEQSGHW 106

Query: 87  DSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           ++Y ++M R+   D   +     P +      IF     SY +LP  +       R+E  
Sbjct: 107 ENYKEDMFRVEGNDLTKEEYGLKPMNCPGHCVIFNRFDHSYNDLPIRYSDFSPLHRNEAS 166

Query: 145 PR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G+ R R F   D + F  TP+  +             + ++               
Sbjct: 167 GALSGLTRVRMFHQDDGHIFC-TPDQVEVEILNCLKLVDMCYTKVFPI--------SGEQ 217

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                 + +   T         +  D       +  +       +     A Y    D+ 
Sbjct: 218 SKSKDSYEIHLSTRPEHYIGELESWDHAEEVLRSVLEKSSKPWKLNAGDGAFYGPKLDIM 277

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAM 322
              + D   +  +V+   ++    F    ++    +  +K  D        +    +G++
Sbjct: 278 ---VKDHHGKQHQVATIQLD----FQLPQRF----NLRYKDRDNSYKRPIMIHRAVLGSV 326

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS-KVGCD--- 378
               A++    +  G  WP  + P +  +I +  +++      ++++ +L  K+  +   
Sbjct: 327 ERFMAMLV---ESNGGKWPFWLNPNQAIVIPLNTNNEEQVKMAKQLHDKLRGKLEIEDNL 383

Query: 379 -----------VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
                         D   E +G +   A    +   +IVG   V   K  ++ R      
Sbjct: 384 KPVPISHVSYNADIDIRAEPVGYRIKDAITKNYSYLIIVGDNEVKAQKFSVRTRENRTPV 443

Query: 428 DMSLEEVINYASHRFSNNR 446
            M   E++       SN +
Sbjct: 444 LMDTNEILEKFKDLESNYK 462


>gi|148377610|ref|YP_001256486.1| threonyl-tRNA synthetase [Mycoplasma agalactiae PG2]
 gi|148291656|emb|CAL59042.1| Threonyl tRNA synthetase [Mycoplasma agalactiae PG2]
          Length = 582

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/441 (13%), Positives = 137/441 (31%), Gaps = 32/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD       + + T       +G   WL  G    + +  ++ +   + G
Sbjct: 171 YLALLADRKERDHRKIGKDMKIFT-FSPLAGQGFPIWLENGMYIHNEIRNLVLKLDKKYG 229

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P   +  L+  SG    Y  +M +     ++ +I  P        ++ +   SY
Sbjct: 230 FTEVLTPHFGAELLYKTSGHLAHYKDDMFKPLLVENETLIPRPMTCPHHIIVYNTEKHSY 289

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R+LP  + +    +R E       +     ++       +  +       +M+     + 
Sbjct: 290 RDLPIRYSEQSQLYRYEKSGALTGLERVRGMLLTEGHLFVKYDQIASEVKRMYKQIKEML 349

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
               ++   +                        + F +    +           D+   
Sbjct: 350 SIFNIEISYISLSLRDSNNKD-------------KYFNNDSIWNKAEAMLEKALKDMKVN 396

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
            + VE   A Y    D+   ++  +L     VS   ++      F          ++   
Sbjct: 397 YTKVEGEAAFYGPKIDI---QIDTALGHEITVSTIQLDFLQPEKFD--------LSYIDK 445

Query: 306 DGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           + K+   + +    IG      A++     G    W          +  I  + +     
Sbjct: 446 NNKEVRPIMIHRGLIGTYERFVAILLEQTKGNLPFW-----IAPKQVTIIPVNLEENLAY 500

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K+  +L      V  DD  E++  +   A +     Q+I+GS  ++ + +  +     
Sbjct: 501 VKKVAKKLLNNDFRVKIDDSDERLNKKIRNAQVSKSKFQLILGSNEMNSNTISYREYGKE 560

Query: 425 IREDMSLEEVINYASHRFSNN 445
               +S+ + I       +N 
Sbjct: 561 ETTTVSINDFIKLLKKLRNNY 581


>gi|294941858|ref|XP_002783275.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239895690|gb|EER15071.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 908

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/468 (16%), Positives = 143/468 (30%), Gaps = 77/468 (16%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  K +   ++E   RD  +   K  L     H   S G   W   G    + +   IR 
Sbjct: 332 KMLKEYKRNVEEAMKRDHRLIGKKQDLF--FFHPTMSPGSCFWTSHGAVIYNKLVDFIRR 389

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E    G  E+  P + S  L+ +SG   +Y   M    +   +     P +      IF 
Sbjct: 390 EYRLRGFDEVITPNIFSEALFQQSGHCGNYKDNM-YSMNIEGETWFLKPMNCPGHCMIFD 448

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             ++SY+ LP       +  R+EL     G+ R R F   DA+ F    +          
Sbjct: 449 QKVRSYKELPIRMADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCRPDQVQDEIV-HAL 507

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                +++  G                   +F V   T   +   S+   D         
Sbjct: 508 EFLKFVYNTFG------------------FDFSVCLSTRPKKAIGSRAIWDTAESGLKNA 549

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF-------- 290
            +       +     A Y    D+    L D+L    +     ++      F        
Sbjct: 550 LEACGIDYDLNPGDGAFYGPKIDIR---LRDALNRYHQCGTIQLDFNLPIRFNLQYRIAE 606

Query: 291 --------------------GTKYSLPMSATFKG---------------ADGKDHYVQMG 315
                                 K S   SA  +                  G +  V + 
Sbjct: 607 TEESGDAHAASEAANSPVNDQQKGSTQSSAAVENVGSKAKADEITLGELRHGFERPVMIH 666

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
              +G++    A++    +  G  WP  ++P ++ ++ +        D  + +  +L ++
Sbjct: 667 RAILGSIERCTAILT---EHFGGKWPFWLSPRQVMVVPVSDK---YSDYADYVRKQLVRL 720

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           G +   D     +  +   A +  F    +VG K  +D  V ++ R T
Sbjct: 721 GYEADADLSTRTMNKKVREAQVAAFNYIAVVGEKEQNDLTVTLRKRDT 768


>gi|111658322|ref|ZP_01409011.1| hypothetical protein SpneT_02000512 [Streptococcus pneumoniae
           TIGR4]
          Length = 612

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 103/250 (41%), Positives = 142/250 (56%), Gaps = 4/250 (1%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P L+E P DA++ SH LMLR G + Q S G+YS+LPL  + ++    I+R+E  + GA+
Sbjct: 3   IPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKNIMRQEFEKIGAV 62

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           EM  P L SA+LW ESGRY++YG+++ +L +R     I GPTHEE  T I R  +KSY+ 
Sbjct: 63  EMLAPALLSAELWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRDSVKSYKQ 122

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    +     Y++   +Y RIF R
Sbjct: 123 LPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDSVYDEYKAAYERIFTR 182

Query: 188 LGLKSIPMRAESGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            GL    +  + G +GG  S EF+       D     V          IP+E  +     
Sbjct: 183 SGLDFKAIIGDGGAMGGKDSQEFMAITSARTDLDRWVVLDKSVASFDEIPAEVQEEIKAE 242

Query: 244 SLNSIVEQWT 253
            L  IV    
Sbjct: 243 LLKWIVSGED 252



 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   +  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 409 FTAEYVDIREVREGEISPDGQGVLNFARGIEIGHIFKLGTRYSASMGADVLDENGRAVPI 468

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+
Sbjct: 469 IMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLITVNVKDE 528

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +   EK+ A L   G +V  DD  E++G +F+ +DL+G P+++ VG K  +D  VE+K
Sbjct: 529 EAQALTEKLEASLMGAGYEVLTDDRNERVGVKFSDSDLIGLPIRITVGKK-AADGIVEVK 587

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + TG   ++  + V+        + +
Sbjct: 588 IKATGDTIEVHADNVLETL--EILSKK 612


>gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040681|gb|ACT57477.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 652

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 154/445 (34%), Gaps = 37/445 (8%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD    + ++ L    I +   G+  W   G K    + + +R +  
Sbjct: 231 LTQYLYFLEESEKRDHRKLAREMDLF--HIAEDGSGVIFWHRKGWKIFQTLISYMRRKI- 287

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----KAMIYGPTHEEVMTDI 117
           +    E++ P +    LW +SG +DSY   M  +   +D     +     P +      +
Sbjct: 288 KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAV 347

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F   +KSYR LP    +    +R+E      G+MR R F   DA+ F    +        
Sbjct: 348 FNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKI 407

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                + I+   G + I ++  + P     S      A+         K  +D    S  
Sbjct: 408 H-NLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAEN------IMKGVLDTIKNSSQ 460

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              +  + L        A Y    +     L D++  + +     ++    F   +++  
Sbjct: 461 DRINTGVLL-----GEGAFYGPKFEYI---LKDAIGRDWQCGTIQVD----FNLPSRF-- 506

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             +A +  +  +  +  M    +     +   I    +      P  ++P +  +  I +
Sbjct: 507 --NAFYVNSHSEKCHPVMIHRAV--FGSIERFIGIMIENFKGNLPLWLSPIQAIVTTITS 562

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +  ++I   L      +  D   E I  +     +   P+ +I G K  S+  +
Sbjct: 563 S---AVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSI 619

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+   +   + +SL + I   +  
Sbjct: 620 GIRRFGSTTTQKVSLLDAIPILTKE 644


>gi|196000905|ref|XP_002110320.1| hypothetical protein TRIADDRAFT_22327 [Trichoplax adhaerens]
 gi|190586271|gb|EDV26324.1| hypothetical protein TRIADDRAFT_22327 [Trichoplax adhaerens]
          Length = 603

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/416 (16%), Positives = 138/416 (33%), Gaps = 46/416 (11%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L + QE   RD          +    +  S G    LP G + ++ +   +++E    G
Sbjct: 226 WLKMQQEAKERDHRTIGK--DQKLFFFNPLSPGNAFLLPHGLRIINKLKNFLKDEYRVRG 283

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLR-LADRNDKA----MIYGPTHEEVMTDIFRS 120
             E+  P   + +LWV+SG +D Y  +M R  +D  D      +   P +      IF +
Sbjct: 284 YHEVETPLTFNQELWVQSGHWDHYSDDMFRLQSDPQDHENRGSISLKPMNCPGHCLIFGN 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP    +     RDE      G+ R R+F   DA+ F    +  +    +  +
Sbjct: 344 ERHSYRDLPVRLAEFSALHRDEPSGSLGGLTRLRQFHQDDAHIFCTKDQIGEE--VQDCL 401

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             +   + +   +  M+  + P G                         +          
Sbjct: 402 DLINKAYSIFDFNYTMKLSTRPEG-----------------YLGETAVWEEAENRLVNIL 444

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +      S+ +   A Y    DV    + D++  + + +   ++    F          +
Sbjct: 445 NSTGKEWSVNDGDGAFYGPKIDVM---IQDAIGRSHQTATIQLD----FQLP----KRFN 493

Query: 300 ATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             F  + G+ +H V +     G+      ++     G    W           +++ +  
Sbjct: 494 LQFMNSSGELEHPVIIHRAIFGSFERFLGILIEHTAGNWPFW------ISPRQVSVCSVS 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           +   D   +I   L   G     D     +  +  ++ L G+    +VG +     
Sbjct: 548 ERHNDYAREICDSLKINGLYADLDITDVVLNRKIRLSRLAGYNYIAVVGKEEFESK 603


>gi|326793278|ref|YP_004311099.1| prolyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326544042|gb|ADZ85901.1| prolyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 568

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 97/263 (36%), Positives = 139/263 (52%), Gaps = 2/263 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK      +E P +A   SH  +LR G + Q + GIYS LP  ++ +  +  IIR+E
Sbjct: 1   MLMSKLLGERFKEKPGEATSISHIYLLRGGYVRQVTNGIYSLLPPAKRVVSKIENIIRQE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +     E+  P     DLW ESGR+D+ G E++R  DR  K M+ G THEE    + R+
Sbjct: 61  MDAIDGQEVLFPVALPGDLWRESGRFDAVGSELVRFKDRGGKDMVLGMTHEEAAVHLART 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY N PF  YQIQ KFRDE R R G++R REF MKDAYSF  + E  +  Y +   +
Sbjct: 121 EAKSYNNYPFMIYQIQTKFRDEPRARGGLIRVREFTMKDAYSFHTSQEDLEAYYEQCLQA 180

Query: 181 YLRIFHRLGLKSI-PMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTD 238
           Y RIF R G+     +++++G +GG ++HEF++L D GE   + C        +      
Sbjct: 181 YHRIFARAGVPETVCVQSDTGMMGGKVAHEFMLLTDIGEDTIIICDSCDYQSNMEVATGK 240

Query: 239 FDDIISLNSIVEQWTAPYAATSD 261
                +    +E+   P A T +
Sbjct: 241 LPVATTEEGTIEEVHTPNAHTIE 263



 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/191 (35%), Positives = 100/191 (52%), Gaps = 6/191 (3%)

Query: 259 TSDVHNEKL-----FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +D H+               K    RG+EVG+IF  GT+YS  M  T+  +DGK     
Sbjct: 377 DADFHDVAEVLEGQECPCCHGKLQFKRGVEVGNIFQLGTRYSESMGMTYIDSDGKAKTPI 436

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R++A +IE+ HD  G IWP SVAP+++ +  +K+          +IY +LS
Sbjct: 437 MGCYGIGVGRLLACIIEARHDEWGPIWPMSVAPWQVHICVLKSKKTDMDAIGNEIYNKLS 496

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               +V  DD     G QFA ADLLG P++V+VG K + + KVE+  R   +++ + L +
Sbjct: 497 SK-YEVIMDDRNVGAGVQFADADLLGIPVRVVVGEKNLKEGKVELMTRDKSVKKLVDLGD 555

Query: 434 VINYASHRFSN 444
           V    +   + 
Sbjct: 556 VEKEVAALIAE 566


>gi|325673396|ref|ZP_08153087.1| proline--tRNA ligase [Rhodococcus equi ATCC 33707]
 gi|325555417|gb|EGD25088.1| proline--tRNA ligase [Rhodococcus equi ATCC 33707]
          Length = 581

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 131/429 (30%), Positives = 190/429 (44%), Gaps = 38/429 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ASHKL++R G + + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RMSHLFLRTLRDDPADAEVASHKLLVRAGYVRRIAPGVYSWLPLGLRVLREVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+ +P L   D +  S R+  YG  + RL DR    M+ GPTHEE+     +  
Sbjct: 64  NAMGAQEILLPALLPRDPYETSNRWTEYGAGLFRLKDRKGNDMMLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQ+Q K+RDE RPR G++R REF+MKD+YSFDLT EG   SY     +Y
Sbjct: 124 YNSYKDFPVTLYQVQTKYRDEERPRAGILRGREFVMKDSYSFDLTDEGLTASYQAHRDTY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFD 240
            RI  RLG+K + + A SG +GG  S EF+  ++ GE     C +      + +  T   
Sbjct: 184 ERILARLGVKYVIVSATSGAMGGSASEEFLAESEIGEDTYVRCLESGYAANVEAVKTLAP 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   V     P A   D  + +  D+L E     A G ++G               
Sbjct: 244 A------PVPFDGLPPAEVRDTPDTETIDTLVE----WANGADLGRA------------- 280

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               AD   + +       G   ++   I    D +        +      + +   D  
Sbjct: 281 -VTAADTLKNIMVKTRVPGGEWELL--AIGIPGDREVDEKRLEASLEPAEYVLLTETDFR 337

Query: 361 CRDACEKIY---ARLSKVGCDVFWDDM--GEQIGSQFAVADLLGFPLQ-VIVGSKFVSDS 414
                 K Y     L + G     D         S    AD  G     ++ G  F  D 
Sbjct: 338 NNPFLVKGYIGPKALQENGVRYLVDPRVVDGT--SWITGADEEGKHYVGLVAGRDFTPDG 395

Query: 415 KV---EIKH 420
            +   E++ 
Sbjct: 396 TIEAAEVRD 404



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 97/189 (51%), Gaps = 4/189 (2%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     V+ARGIEVGH+F  G KY+        G +GK     MG
Sbjct: 395 GTIEAAEVRDGDPSPDGAGALVAARGIEVGHVFQLGRKYTDVFGVDVLGENGKPVRPTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA + E  HD KG+ WP  V+PF + L  I   D   R+  E + A L K 
Sbjct: 455 SYGIGVSRLVAVIAEQHHDDKGLRWPSEVSPFDVHL-VIANKDDAAREGAEALAAELDKA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             DV +DD     G +F  ++L+G PL V+VG +  ++  VE++ R TG   ++ ++  +
Sbjct: 514 RVDVLFDDRKASPGVKFKDSELIGVPLVVVVG-RGFAEGNVELRDRFTGESREVPVDAAL 572

Query: 436 NYASHRFSN 444
           +       +
Sbjct: 573 DEILTAVRS 581


>gi|210615498|ref|ZP_03290625.1| hypothetical protein CLONEX_02841 [Clostridium nexile DSM 1787]
 gi|210150347|gb|EEA81356.1| hypothetical protein CLONEX_02841 [Clostridium nexile DSM 1787]
          Length = 657

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 73/437 (16%), Positives = 148/437 (33%), Gaps = 36/437 (8%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
             RD      ++ L T  +    +G+   +P G   +  +   I +E+ R G +    P 
Sbjct: 240 KKRDHNKLGREMELFTT-VDVIGQGLPLLMPKGAAMVQTMQRWIEDEEERRGYMRTKTPL 298

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRN---DKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +   DL+V S  +  Y + M  L D     ++     P        +++   KSYR+LP 
Sbjct: 299 MAKKDLYVISDHWGHYKEGMFVLGDEEKEGEEVFALRPMTCPFQYYVYKQSQKSYRDLPC 358

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + +    FR+E      G+ R R+F + + +   + P+  +  +             LG
Sbjct: 359 RYGETSTLFRNEDSGEMHGLTRVRQFTISEGH-LVIRPDQVEDEFKGCVDLAKYCLTTLG 417

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           ++             D+++   +       +   +++  D          D +    +  
Sbjct: 418 VEE------------DVTYRLSLADPDNMDKYLGTREMWDEVEDVMRKMLDHLEINYTEE 465

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+  + ++      K  +   I            +     TF   DG+ 
Sbjct: 466 TGEAAFYGPKLDIQAKNVY-----GKEDTMITI------QLDMFLAERFDMTFVDKDGEK 514

Query: 310 HYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
               +     +G      A +    +    ++P  + P ++ ++ I    +   D   K+
Sbjct: 515 KRPYIIHRTAMGCYERTLAWLI---EKYAGLFPTWLCPEQVRVLPI---SEKYHDYANKV 568

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L   G     D+  E+IG +     L   P  ++VG+K   +  V ++ R  G    
Sbjct: 569 ANELRGNGVKCTVDERAEKIGYKIRETRLDRVPYMLVVGAKEEEEGVVSVRSRYLGDEGQ 628

Query: 429 MSLEEVINYASHRFSNN 445
             L+  IN         
Sbjct: 629 KPLDTFINDICKEIRTK 645


>gi|260888481|ref|ZP_05899744.1| threonine--tRNA ligase [Selenomonas sputigena ATCC 35185]
 gi|330838210|ref|YP_004412790.1| threonyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
 gi|260861678|gb|EEX76178.1| threonine--tRNA ligase [Selenomonas sputigena ATCC 35185]
 gi|329745974|gb|AEB99330.1| threonyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
          Length = 593

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 135/449 (30%), Gaps = 51/449 (11%)

Query: 6   YFLPILQENP-----------RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           Y  P  +E             RD +    +L L   M  + + G+  WLP G K  + + 
Sbjct: 161 YAFPTKEELKAHLAFIKDAQERDHKKIGPQLDLF--MFDETAPGMPYWLPRGWKLFNALL 218

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML-----RLADRNDKAMIYGPT 109
              R      G  E+S P + +  LWV SG +  Y + M            D      P 
Sbjct: 219 EFWRGIHEAHGYQEVSAPVINNKRLWVTSGHWAHYKENMFLIPGADGDIEADDTFAIKPM 278

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
           +      I++   +SYR+LP  +  + +  R E       +   +   +D     L  + 
Sbjct: 279 NCPNAIKIYQRKTRSYRDLPIRYNTVDVIHRKEKSGELNGLFRVQLFRQDDDHTFLMEDQ 338

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                  +      I+  LG+        + P       E   +A+     +   K    
Sbjct: 339 IAAEMGDIMDIADEIYSTLGMS-CKAELSTRPDDFMGDIETWNVAEKELKAILDRKYGE- 396

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                             + E   A Y    D+   K+ D+L    +V    ++    F 
Sbjct: 397 --------------GNYEVNEGDGAFYGPKIDL---KMKDALGREWQVGTLQLD----FQ 435

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
               + L   A       K   V   +      R +  +IE+                  
Sbjct: 436 LPQNFDLKYIAK--DGSHKQPVVLHRAIFGSMERFIGVLIENFKGAFPFWLSPVQVGIVP 493

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
                        D  +K+  +L K       D   + +  +         P  +++G K
Sbjct: 494 IRP-------EHNDYAKKVAQKLFKSRVRFEVDYADKNMREKIKGFKHYKDPYILVLGDK 546

Query: 410 FVSDSKVEIKHRLTGIR-EDMSLEEVINY 437
              ++ V I  R T  + +D+ L+  I  
Sbjct: 547 EAEENTVSINVRGTNEQLKDVPLDTFIEM 575


>gi|119472992|ref|ZP_01614827.1| threonyl-tRNA synthetase [Alteromonadales bacterium TW-7]
 gi|119444612|gb|EAW25923.1| threonyl-tRNA synthetase [Alteromonadales bacterium TW-7]
          Length = 586

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 67/393 (17%), Positives = 127/393 (32%), Gaps = 41/393 (10%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  L+E   RD       L L      + + G+  W   G      +   +RE+
Sbjct: 227 KQLKAYLKRLEEAEKRDHRRIGKALDL--WHWQEEAPGMVFWHNDGWSIYRELEEFVREK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW +SG ++ Y   M    +   +     P +      IF  
Sbjct: 285 LREYSYEEVKGPMMMDRSLWEKSGHWEKYSDAMFT-TESEKREYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +      +    
Sbjct: 344 GLKSYRDLPLRMAEFGCCHRNEPSGALHGLMRVRGFTQDDAHVFCTEEQVMDE-VSACIK 402

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                +   G   I ++  + P       E    A+                + + + +F
Sbjct: 403 MVYDTYETFGFDKIVVKLSTRPEKRIGDDEIWDKAEVALAD----------ALKANDIEF 452

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D        +    A Y    +     L+D L    +     ++       G        
Sbjct: 453 D-------YLPGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFALPGRLG-------- 494

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+   + +      +    +G++     ++   + G    W        +++       
Sbjct: 495 ATYVAENNERRTPVMIHRAILGSIERFIGILTEEYAGLFPTWLAPKQVVIMNIT------ 548

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
               D   +I  +L+K+G     D   E+IG +
Sbjct: 549 DKQADYVHEIVQKLNKLGIRAAADLRNEKIGFK 581


>gi|124025277|ref|YP_001014393.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
 gi|152112940|sp|A2C0W8|SYP_PROM1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123960345|gb|ABM75128.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
          Length = 596

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 120/420 (28%), Positives = 188/420 (44%), Gaps = 36/420 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +A+I SH+L++R G I + + GIY+++PL  K L  + +I+ EE
Sbjct: 1   MRVSRLMLNTLRDVPSEADIISHQLLVRGGYIKRITGGIYAYMPLLWKVLKKITSIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  G ++  +P LQ +++W  SGR+ SY +    M  L DR  K +  GPTHEEV+T I
Sbjct: 61  LSTKGCLQTLLPQLQPSEIWERSGRWKSYTQGEGIMFSLKDRQGKELGLGPTHEEVITQI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               I SY+ LP   +QIQ KFRDE+RPRFG+MRSREF+MKDAYSF       + +Y+ M
Sbjct: 121 ISQTIHSYKQLPINIFQIQTKFRDEIRPRFGLMRSREFIMKDAYSFHANENDLQSTYSDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  IF + GL  + + A+SG IGG  S EF+V A++GE  +  S D        +  
Sbjct: 181 RNAYQNIFTKCGLDFVCVDADSGAIGGAASQEFMVTAESGEDLILISSDGKYGANQEKAV 240

Query: 238 DFDDIIS---------LNSIVEQWTAPYAATSDVHNEKLFD------SLPENK----RVS 278
              +  +         + +  ++        +D H  ++        +  +NK     VS
Sbjct: 241 SIIEEGNLLEPNKPSIIKTPNQKTIDELCNYNDFHPSQIVKVLAYLATCDDNKKYPVLVS 300

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKG---------ADGKDHYVQMGSYGIGAMRVVAAVI 329
            RG +  +      K S  +                      +  G  G      + A  
Sbjct: 301 IRGDQEINDIKLSNKISQELKKNVLDIRIIYNEDMQKQGITNIPFGFIGPDLSDNLLAQS 360

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           +        I  +S    K  +      D+        +          +  D    + G
Sbjct: 361 KGWEKKFIRIADNSAKDLKSFICGNNIKDEHKIFYNWNLINT-----VQLICDIRKAKPG 415



 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 77/284 (27%), Positives = 120/284 (42%), Gaps = 17/284 (5%)

Query: 171 KHSYNKMFVSYLRIFHRLG-----LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
           K +   + + Y     + G        I        +      E   +     +      
Sbjct: 321 KKNVLDIRIIYNEDMQKQGITNIPFGFIGPDLSDNLLAQSKGWEKKFIRIADNSAKDLKS 380

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK---RVSARGI 282
                 I  E+  F +   +N+             D+   K  D    +K       RGI
Sbjct: 381 FICGNNIKDEHKIFYNWNLINT--------VQLICDIRKAKPGDRCIHDKTQKLEECRGI 432

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           E+GHIF  GTKYS  ++ATF    G + ++ MG YGIG  R+  A +E +HD  GIIWP 
Sbjct: 433 EIGHIFQLGTKYSKSLNATFTNEKGIEDHLWMGCYGIGISRLAQAAVEQNHDDLGIIWPT 492

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           S+APF + +I     +   +   E IY +L +   DV  DD  ++ G +F  ADL+G P 
Sbjct: 493 SIAPFTVIIIIANIKNNDQKCLAEDIYQKLIQNRVDVLLDDRDDRAGIKFKDADLIGIPW 552

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +++ G +  S   VE+ +R T   E + L  V+   S  F+  +
Sbjct: 553 RIVAG-REASSGLVELHNRKTKTTELLDLNSVLKKLSEEFNTEK 595


>gi|123968100|ref|YP_001008958.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
 gi|152112943|sp|A2BPZ0|SYP_PROMS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123198210|gb|ABM69851.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
          Length = 600

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 102/241 (42%), Positives = 144/241 (59%), Gaps = 5/241 (2%)

Query: 1   MRRSKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           MR +  F L  L++ P +AEI SH+L+L+ G I + + GIY+++PL  + ++ ++AII +
Sbjct: 1   MRVTTSFPLGTLRDTPSEAEIISHQLLLKAGYIRRVNSGIYAYMPLMLRVIEKISAIIEK 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTD 116
           E N  G  ++ +P L  ADLW +S R++ Y      M  L DR  K     PTHEEV+T 
Sbjct: 61  ELNSIGCTKLLLPQLHPADLWKKSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITS 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I    I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKD YSF  +       Y K
Sbjct: 121 IASETINSYKQLPQCFYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHSSQNDLASFYEK 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +  +Y  IF   GL+++ + A+SG IGG  S EF+V AD GE  +  ++    +    E 
Sbjct: 181 VSNAYENIFKSCGLQTVGVEADSGAIGGASSKEFMVTADAGEDSILFTQSGS-YAANIEK 239

Query: 237 T 237
            
Sbjct: 240 A 240



 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 4/184 (2%)

Query: 261 DVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N K  D +    + +    +GIE+GHIF  G KYS  ++A F   DG+   + MG Y
Sbjct: 409 DIRNAKKGDKISVYDDEELKEKKGIEIGHIFQLGQKYSEKLNAKFSDKDGQLKNLWMGCY 468

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+  A IE +HD KGI WP  ++PF++ +I     D +  D  E+IY+       
Sbjct: 469 GIGVTRIAQAAIEQNHDQKGICWPIHISPFEVIIIPTNLKDPIQSDLTEQIYSNFLINKI 528

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD  ++ G +F  A+L+G P Q+I+G   + + +VE+  R    +  +S ++++  
Sbjct: 529 DVLLDDRNDRAGVKFKDAELIGIPFQIIIGRDSI-NKEVELLCRTNNTKLKISTDKLLET 587

Query: 438 ASHR 441
               
Sbjct: 588 FISE 591


>gi|327356150|gb|EGE85007.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 770

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 79/482 (16%), Positives = 143/482 (29%), Gaps = 68/482 (14%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ +  L  L+E   R+         L      + S G    LP G K  + +  ++R E
Sbjct: 315 KQMQEHLKFLEEAEKRNHLRIGKDQDLF--FFDEVSPGCPFLLPNGTKIFNALQKLLRSE 372

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F  
Sbjct: 373 YLKRGYQEVQSPNMYDVGIWRQSGHWQHYKDDMFKL-DIEKRTWALKPMNCPGHAIMFGH 431

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    +  K   + +F 
Sbjct: 432 KERSYRELPIRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCTEDQIMKE-IDGLFD 490

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G     ++  + P       E    A+             D+ +       
Sbjct: 491 FLRAIYGLFGFSF-KLKLSTRPEKYMGKIETWNYAEDQLRAALTKFKGNDWEVE------ 543

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS---- 295
                     E   A Y    D+    + D+L    + +   ++      F  +Y     
Sbjct: 544 ----------EGDGAFYGPKIDI---TIQDALKREFQCATIQLDYQMPVNFKLEYMTGET 590

Query: 296 ------LPMSATFKGA--------------------DGKDHYVQMGSYGIGAM-RVVAAV 328
                     A                          G+   V +    IG+  R    +
Sbjct: 591 GAKAKPTEKPAENPDEKPAGDAAKPDAPPTNSDEPGPGRARPVVIHRAIIGSFERFFGII 650

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           IE                    +  I        D  E++   L     +V  D  G  +
Sbjct: 651 IEHFGGKWPFWLSPRQILIVPVMPAIN-------DYVEELQQILKGDKLNVDIDISGNTM 703

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSN 444
             +     +  +    +VG++  S   V I++R     +     + LEE           
Sbjct: 704 QKKIRTGQIAQYNFIFVVGAQEKSTRTVNIRNRDDPSSQAKGSLVPLEEARVKLRALRKE 763

Query: 445 NR 446
            R
Sbjct: 764 RR 765


>gi|194246566|ref|YP_002004205.1| Threonyl-tRNA synthetase [Candidatus Phytoplasma mali]
 gi|254783531|sp|B3R0I8|SYT_PHYMT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|193806923|emb|CAP18352.1| Threonyl-tRNA synthetase [Candidatus Phytoplasma mali]
          Length = 640

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 156/441 (35%), Gaps = 33/441 (7%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L ILQE    D +  +  L     +  +   G+  WL  G      +   I +++   G 
Sbjct: 230 LKILQERKMSDHKYINKDLNFFM-LSQEVGLGLPFWLSKGSTIRRIIERYIVDKELIGGY 288

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSY 125
             +  P + + +++  SG  + Y   M    +  +    +  P +      I+++ I SY
Sbjct: 289 EHVYTPVIANINIYSTSGHLEHYRDNMFPAMNMPNGEKYVLRPMNCPHHMMIYKNKIYSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           + LP    ++ +  R E      G+ R RE  + DA+ F  T +  +  + K+      +
Sbjct: 349 KELPIRIAELGMMHRLEKSGAVSGLERVREMTLNDAHIFIRTDQIKEE-FKKIVNFIQEV 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +    + +   R                     + + F   +  +           ++  
Sbjct: 408 YRDFDINNYIFRLS-------------YRDPLDKKKYFNDDEMWNKAENILKEIMLELKL 454

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             + V+   A Y    DV   ++  +L   + +S+  I+    F          + T+ G
Sbjct: 455 NFTEVQGEAAFYGPKLDV---QVLTALGHEETLSSVQID----FLLP----KRFNLTYVG 503

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DGK +   +    I +            +     +P  +AP ++ LI I   + +    
Sbjct: 504 EDGKKYSPILIHRCIVSTMER--FFSYLLERYKGFFPFWLAPLQVILIPINLDNHLI--Y 559

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +KI + L K G  V  +     +  +   A     P Q+++G K + D  +  +     
Sbjct: 560 AQKIKSILLKNGFRVEINQKDSTLSYKIREAQKWKIPYQIVIGDKEIKDDIITFREYKKD 619

Query: 425 IREDMSLEEVINYASHRFSNN 445
           ++  M +++ I+    +    
Sbjct: 620 LQIMMKIDKFIHLLISKMKQK 640


>gi|158340035|ref|YP_001521204.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|158310276|gb|ABW31891.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 439

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 74/453 (16%), Positives = 143/453 (31%), Gaps = 54/453 (11%)

Query: 6   YFL--PILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           Y+L      E    D    +  + L      +HS G+  W P G +   ++   +R+   
Sbjct: 21  YYLITQTTGETKMADHRELARDMDLF--HFEEHSPGMVFWHPQGLRLFRSIEDFMRQVYQ 78

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEML----RLADRND--------KAMIYGPTH 110
             G  E+  P   +  LW  S  ++ + + M       AD +D              P  
Sbjct: 79  GHGFEEVRSPIALNRSLWERSRHWEKFRQGMFVVGSVEADIDDESALSVISPDYALKPMS 138

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEG 169
                 I++S  +SYR  P    +  +  R+EL     G MR R+F+  DA+ F    + 
Sbjct: 139 CPAHIAIYQSRKRSYRENPMRLMEFGICHRNELSGTLSGCMRLRQFVQDDAHIFCRASDV 198

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
            +   +       +++   G     ++    P                      S    D
Sbjct: 199 QRE-ISNFLNMVQQVYVAFGYDQFSLQISLRPEQR-----------------LGSDHLWD 240

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                       +     +     A Y    ++    L D L  + +     ++    F 
Sbjct: 241 QAESVLVKAVQSLGHSYKLAPNEGAFYGPKLEI---SLQDQLGRSWQCGTIQVD----FN 293

Query: 290 FGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                       F    G+ +  V +    +G++     ++   H G   IW        
Sbjct: 294 LPQ----VFELAFVNELGELERPVMLHQAILGSLERWIGILLEHHSGALPIWA------A 343

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            + + + +         E I+ RL ++G  V   +    I  +         PL  IVG 
Sbjct: 344 PTQVAVASISNKASAWAETIFFRLRQLGARVELHNQNRTISKKIRGLSKRKIPLIAIVGE 403

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +     ++ ++      +++MSL E+    +  
Sbjct: 404 QEAMSQRLNLRCLGALKQQEMSLAELEQKLADL 436


>gi|315180910|gb|ADT87824.1| prolyl-tRNA synthetase [Vibrio furnissii NCTC 11218]
          Length = 546

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 100/211 (47%), Positives = 136/211 (64%), Gaps = 1/211 (0%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+R+E +R GAIE  +P +Q  +LW E+GR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGLRVLRKVENIVRQEIDRAGAIETLMPVVQPFELWEETGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            +  G E+LR  DR+ +  +  PT EEV+T + R+ + SY+ LP   YQIQ KFRDE RP
Sbjct: 61  SEKMGPELLRFTDRHVRPFVLSPTAEEVITALVRNEVSSYKQLPLNLYQIQTKFRDERRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMR+REF M DAYSFDL  +G + SY+ M  +Y + F R+GL   P+ A+SG IGG+
Sbjct: 121 RFGVMRAREFSMMDAYSFDLDKQGLQKSYDAMHAAYCKAFDRMGLDYRPVLADSGAIGGN 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
            S EF VLA++GE  +       D+    E 
Sbjct: 181 GSQEFHVLAESGEDLIVF-STESDYAANIEK 210



 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 67/196 (34%), Positives = 112/196 (57%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                    +D+ N    D     +   +  RGIEVGHIF  GT YS  M+ +  G DGK
Sbjct: 351 GRDVALGKVADLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKMNCSVLGPDGK 410

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
           +  ++MG YGIG  RVVAA IE ++D  GIIWPD++APF+++++ +     +  + A EK
Sbjct: 411 NVILEMGCYGIGVSRVVAAAIEQNNDKYGIIWPDAIAPFQVAIVPMNMHKSERVQQAAEK 470

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA LS  G DV +DD  E+ G  F+  +L+G P  +++G + + +   E K+R  G + 
Sbjct: 471 LYAELSAAGIDVLFDDRKERPGVMFSDMELIGVPHTIVIGDRSMDEGNFEYKNRRNGEKT 530

Query: 428 DMSLEEVINYASHRFS 443
            +++++++ +   + +
Sbjct: 531 AIAIDQIVEHIKAQLA 546


>gi|126695873|ref|YP_001090759.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
 gi|166980139|sp|A3PBN3|SYP_PROM0 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|126542916|gb|ABO17158.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
          Length = 600

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 102/241 (42%), Positives = 144/241 (59%), Gaps = 5/241 (2%)

Query: 1   MRRSKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           MR +  F L  L++ P +AEI SH+L+L+ G I + + GIY+++PL  + ++ ++AII +
Sbjct: 1   MRVTTSFPLGTLRDTPSEAEIISHQLLLKAGYIRRVNSGIYAYMPLMLRVVEKISAIIEK 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTD 116
           E N  G  ++ +P L  ADLW +S R++ Y      M  L DR  K     PTHEEV+T 
Sbjct: 61  ELNSIGCTKLLLPQLHPADLWKKSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITS 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I    I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKD YSF  +       Y K
Sbjct: 121 IASETINSYKQLPQCFYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHSSENDLASFYEK 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +  +Y  IF   GL+++ + A+SG IGG  S EF+V AD GE  +  ++    +    E 
Sbjct: 181 VGNAYENIFESCGLQTVGVDADSGAIGGASSKEFMVTADAGEDSILFTQSGS-YAANIEK 239

Query: 237 T 237
            
Sbjct: 240 A 240



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 4/184 (2%)

Query: 261 DVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N K  D +    + +    +GIE+GHIF  G KYS  ++A F   DG+   + MG Y
Sbjct: 409 DIRNAKKGDKISIDDDEELKEKKGIEIGHIFQLGQKYSEKLNAKFSDKDGQLKNLWMGCY 468

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+  A IE +HD KGI WP  ++PF++ +I     D +  D  E+IY        
Sbjct: 469 GIGVTRIAQAAIEQNHDQKGICWPIQISPFEVIIIPTNLKDPIQSDLTEQIYNNFLINKI 528

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD  ++ G +F  A+L+G P QVI+G   + + +VE+  R    +  +S ++++  
Sbjct: 529 DVLLDDRNDRAGVKFKDAELIGIPFQVIIGRDSI-NKEVELFCRTNNTKIKISTDKLLET 587

Query: 438 ASHR 441
               
Sbjct: 588 FISE 591


>gi|323341796|ref|ZP_08082029.1| proline--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464221|gb|EFY09414.1| proline--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 569

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 108/276 (39%), Positives = 155/276 (56%), Gaps = 8/276 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F   ++E+ RD +  S  L++R G I + S G+Y ++PLG K  + +  IIREE
Sbjct: 9   MKLSKSFFYTIREDVRDEDSTSGNLLVRAGYIKKSSSGVYMYMPLGLKVKNKIENIIREE 68

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   A EM++PTL   D++V SGR D  G  M +L DR  K  + GPTHEE+     + 
Sbjct: 69  MNAIDAQEMTMPTLIPEDVYVASGRRDIIGTSMFQLDDRFKKPFVLGPTHEELFAQAAQM 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+++PF+ YQ Q KFRDE RPRFG++R REF+MKD+Y+FD   E +  SY+ MF +
Sbjct: 129 KIRSYKDMPFSLYQFQTKFRDEARPRFGLIRVREFVMKDSYTFDADLESADKSYDAMFEA 188

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-----CSKDFMDFPIPSE 235
           Y RIF R+GL    +RA++G +GG LS EF  + D GE  +           ++      
Sbjct: 189 YKRIFDRVGLDYRIVRADTGIMGGLLSEEFQAVTDIGEDILVLGEETGYSSNLEVAENVY 248

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               D+        E+   P A T +   E L   +
Sbjct: 249 RIQSDE---PFLSKEKVYTPNARTIEEVAEFLKQPV 281



 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/183 (36%), Positives = 105/183 (57%), Gaps = 3/183 (1%)

Query: 260 SDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            DV N K  D  P+ K V    +GIEVG+ F  GTKYS  M   +   + K   V MGSY
Sbjct: 386 IDVSNVKEGDPNPDGKGVLTFSKGIEVGNTFKLGTKYSKAMGLEYLDQNNKLQDVYMGSY 445

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R +AAV+E ++D  GI+WP ++APF+++++ I   ++      + +Y  LS+ G 
Sbjct: 446 GIGLGRTLAAVVEQNNDENGIVWPMNLAPFQVAIVVINNKNEEHMAFADDLYQELSQAGL 505

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  ++ G +F   DL+G PL++ VG + V   +VE+K R +G  + +  E+++N 
Sbjct: 506 EVILDDRKQRPGIKFNDMDLIGVPLRITVG-RDVEHGEVELKERKSGNEQKIKREDILNV 564

Query: 438 ASH 440
              
Sbjct: 565 LKS 567


>gi|241955201|ref|XP_002420321.1| threonyl-tRNA synthetase, cytoplasmic, putative [Candida
           dubliniensis CD36]
 gi|223643663|emb|CAX41396.1| threonyl-tRNA synthetase, cytoplasmic, putative [Candida
           dubliniensis CD36]
          Length = 706

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 72/452 (15%), Positives = 150/452 (33%), Gaps = 46/452 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++   + +   RD      +  L   + ++ S G   WLP G +  + +   +R E  
Sbjct: 287 MTEHLKFLAEAAERDHRKIGREQELF--IFNEMSPGSAMWLPHGARIYNTLVDTLRTEYR 344

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + S  LW  SG + +Y + M       +      P +      +F+S  
Sbjct: 345 KRGYEEVITPNMYSTKLWETSGHWQNYKENMFSFEVEKET-FGLKPMNCPGHCILFKSRE 403

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP+      +  R+E      G+ R R F   DA+ F  T +        +F   
Sbjct: 404 RSYRELPWRVADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCTTDQIGTE-IAGVFDFL 462

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                               + G    EF +   T   +     +  +          +D
Sbjct: 463 K------------------KMYGIFGFEFKMELSTRPEKYVGDLETWNSAEKKLEQALND 504

Query: 242 IISLNSI--VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +            A Y    D+    + D+L    + +   ++    F    ++ L   
Sbjct: 505 FLGEGKWELNPGDGAFYGPKIDIM---ISDALKRWFQCATIQLD----FQLPQRFELEYK 557

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                       V +    +G++  + A++    +     WP  ++P ++ ++ +     
Sbjct: 558 ---SDKGPNTRPVMIHRAILGSVERMTAILT---EHYKGKWPFWLSPRQVLIVPVGPK-- 609

Query: 360 VCRDACEKIYARLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              D  +K+  +L+         D  G  +  +     L  +    IVG    +   V +
Sbjct: 610 -YYDYAQKLQKKLNDDYFFYCDVDVSGNTLPKKIRTGQLYKYNFIFIVGEDEENSESVNV 668

Query: 419 KHRL----TGIREDMSLEEVINYASHRFSNNR 446
           ++R      G    +  ++V+        + R
Sbjct: 669 RNRDIPEEQGKNAMVKFDDVVKQMVALRESKR 700


>gi|15611293|ref|NP_222944.1| prolyl-tRNA synthetase [Helicobacter pylori J99]
 gi|11135064|sp|Q9ZMJ6|SYP_HELPJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|4154734|gb|AAD05795.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylori J99]
          Length = 576

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 97/235 (41%), Positives = 133/235 (56%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + S K   + G I+Q   GIY++LPL +K LD +  +  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSPKHPGKAGYIYQIGSGIYNFLPLAKKVLDKIENVTHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   ++  D+    E
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGGSKSREFVVLTECGEDTIVVCQNC-DYAANIE 234



 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 389 ADIVQVKESDCCPNCQGALKYHKSLEVGHIFKLGQSYAKSLKASFLDKNGKERFFEMGCY 448

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++ ++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 449 GIGISRLLSVILEQKSDDLGCVWTKNTAPFDVVIVVSNLKDEAQKKLAFEVYERLLQKGV 508

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +IVG + +   + E   R    ++ +   E+   
Sbjct: 509 DALLDDRDARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTIKDIELEEK 568

Query: 438 ASHRFSN 444
                ++
Sbjct: 569 ILEMLAS 575


>gi|15829217|ref|NP_326577.1| threonyl-tRNA synthetase [Mycoplasma pulmonis UAB CTIP]
 gi|22654134|sp|Q98PH6|SYT_MYCPU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|14090161|emb|CAC13919.1| THREONYL-TRNA SYNTHETASE 1 (THREONINE--TRNA LIGASE) (THRRS)
           [Mycoplasma pulmonis]
          Length = 589

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 67/441 (15%), Positives = 144/441 (32%), Gaps = 34/441 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L ++++   RD       L + T        G   WL  G      +   I     + G
Sbjct: 180 YLKVIEDRKERDHRKIGKNLGIFT-FSSLSGLGFPIWLKKGMLIKRAIEKEILYLDRKYG 238

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P      L+++SG    Y + M +  +  ++ +I  P        I+ +  +SY
Sbjct: 239 FEEVLSPHFGEESLYIKSGHLAHYQETMFKSLEVENEKLIPRPMTCPHHIIIYDAFPRSY 298

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +    +R E      G+ R R   + + + F    +        M       
Sbjct: 299 RELPLRLSEQSRLYRYEKSGALTGLERVRTMDLTEGHIFIRQDQIKDE-VLNMINLIQET 357

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                +K   +                   D  + + F      D    +     D    
Sbjct: 358 LKIFKIKIDHVALSLR--------------DNDKEKFFDDDQMWDQAESALKEILDQNKI 403

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + +   A Y    D   + + +++     +S   ++    F    K+    + ++  
Sbjct: 404 DYIVEKGEAAFYGPKIDFQVKTVLNNII---TMSTIQLD----FLLPRKF----NISYIA 452

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            DG      M     G +      +    +     +P  ++P ++ ++ I       ++ 
Sbjct: 453 PDGSKQTPLMIHR--GLIGTYERFVSILLEQTKGNFPFWLSPSQVIVLPIAK---EFKEY 507

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +IY+++ K   +V  D+  E I  +   A +  +  Q+I+G + + +  + I+     
Sbjct: 508 AFEIYSKIFKQNFNVEIDNRDETINKKIREAQINKYKYQIIIGKQEMENKTIAIREYGKV 567

Query: 425 IREDMSLEEVINYASHRFSNN 445
               M LE  I     +  + 
Sbjct: 568 QTITMDLESFIEKIKSQRDSK 588


>gi|237756770|ref|ZP_04585264.1| prolyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691073|gb|EEP60187.1| prolyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 162

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 84/162 (51%), Positives = 114/162 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK+F+P L+ENP DA + SH  ++R G I   S GIY +LPLG + L  +  IIR+ 
Sbjct: 1   MLASKFFMPTLKENPSDAVVPSHIYLVRGGFIRSLSAGIYEYLPLGLRVLRKIENIIRKH 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            + +GA+E+ +P L  A+LW E+GR+  YGKE+ RL DR D     GPTHEE +TD+ R 
Sbjct: 61  MDDSGALEVLLPILTPAELWKETGRWYVYGKELFRLKDRKDAEFALGPTHEETITDLVRK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
           +++SY++LP  FYQIQ KFRDE RPR+G++R REF+MKD YS
Sbjct: 121 NVRSYKDLPLNFYQIQTKFRDEARPRYGLIRGREFIMKDGYS 162


>gi|293363452|ref|ZP_06610209.1| threonine--tRNA ligase [Mycoplasma alligatoris A21JP2]
 gi|292552972|gb|EFF41725.1| threonine--tRNA ligase [Mycoplasma alligatoris A21JP2]
          Length = 580

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 138/443 (31%), Gaps = 34/443 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L IL++   RD      ++ L         +G+  WL  G    + +  ++ +   + G
Sbjct: 169 YLEILKDRKERDHRKIGKEMKLFA-FSKLSGQGLPIWLEDGMAIHNEIKNLVLKMDKKYG 227

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P      L+  SG    Y  +M +      + +I  P         +    +SY
Sbjct: 228 FREVLTPHFGEETLYKISGHLAHYKDDMFKPIVVEGERLIPRPMTCPHHIICYNMEKRSY 287

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R+LP  + +    +R E       +     ++       L P+  +  +  M+       
Sbjct: 288 RDLPIRYSEQSQLYRYEKSGALTGLERVRGMLLTEGHIFLRPDQIESEFKTMYALIKETL 347

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS-ENTDFDDIIS 244
             L +K   +                   D  + + +   D M     +      DD+  
Sbjct: 348 DLLKIKINYISLSLR--------------DKEDKEKYFDDDKMWNSSEAQLRKVLDDLNI 393

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    D+   ++F SL     +S   ++    F   +++       +  
Sbjct: 394 EYEEKIGEAAFYGPKIDI---QIFTSLGHEITISTLQLD----FLLPSRF----EMKYTD 442

Query: 305 ADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            DG++     +    IG      A +     G    W        I +  I  +     +
Sbjct: 443 KDGEEKTPVLLHRGLIGTYERFVATLLEQTKGNLPFWLAPKQVTVIPVHEINNY-----E 497

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++   L         DD  E++  +   A +     Q+I+G K      +  +    
Sbjct: 498 YAKEVNEFLFANDIRTKLDDREERLSKKMREAQISKSKYQLILGDKEQESKTISYRKYGE 557

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
                 SLE+ +   ++     R
Sbjct: 558 DSTTTTSLEKFLEMLNNDKKAYR 580


>gi|16081463|ref|NP_393810.1| threonyl-tRNA synthetase [Thermoplasma acidophilum DSM 1728]
 gi|22654139|sp|Q9HL99|SYT_THEAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|10639503|emb|CAC11475.1| threonine--tRNA ligase related protein [Thermoplasma acidophilum]
          Length = 660

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 78/472 (16%), Positives = 157/472 (33%), Gaps = 52/472 (11%)

Query: 2   RRSKYFLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +L  L+E  R D      ++ L      + + G   +   GQ     + + +   
Sbjct: 209 KLLKQYLNNLEEAKRRDHRRIIAEMDL-AVFNSEWAPGFPLYTQYGQTIRKELLSYMDSM 267

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++  P +    +W +SG Y  Y   M      +  +    P +      IF  
Sbjct: 268 NRKNGWFDVWTPHVFRDTIWKQSGHYAKYRPNMYLFTLPDGDSYGIKPMNCPGHIAIFSR 327

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              SYR+LP  + +    +R E      G+ R R F   D ++F    +       +  +
Sbjct: 328 RKYSYRDLPVRYSEPGTVYRYEKSGEVGGLTRPRAFTQDDGHAFLRMDQIGDE--IRTLL 385

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-------------QVFCSKD 226
           + ++    +   +I +  +   I  D    ++V                       C   
Sbjct: 386 TMVKDVFTILFGNIELSFDLSVIDRDHPENYLVSYVCRNCGYRIEGARGTDIECPVCHSH 445

Query: 227 -------FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                    D            +           A Y    DVH   + D++    ++S 
Sbjct: 446 DLEPDLSVWDNATEQLRDALKSMGIEYKEYPGEAAFYGPKIDVH---VKDAIGRMWQLST 502

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIESSHDGKGI 338
             ++      FG         T+  ++GK+   V +     G+   V A++   + GK  
Sbjct: 503 IQLDFFMPVNFG--------LTYTNSEGKEDRVVMIHRAIYGSYERVMAILLEHYAGKLP 554

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            W   + P +  ++ I ++     +    ++  L + G     D   E +  +     L+
Sbjct: 555 TW---LTPIQTYVVPISSN---FDEYARHVHEELIRHGIRSEIDTSQETVSKKIK---LI 605

Query: 399 GFPLQ----VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             P +    ++VGSK +  + V  ++R  G  +  SL E I+         +
Sbjct: 606 H-PYRPAYIIVVGSKEMETNSVTARNR-EGKSKTYSLSEFIDVVKKEIEQRK 655


>gi|194865182|ref|XP_001971302.1| GG14505 [Drosophila erecta]
 gi|190653085|gb|EDV50328.1| GG14505 [Drosophila erecta]
          Length = 458

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 134/457 (29%), Positives = 215/457 (47%), Gaps = 48/457 (10%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+++D   
Sbjct: 3   KASRIFCPALI-TPKNAVVKQTEQLSRSQKLLTELGLVKSGSNGTYQIMPMAQRSVDKFI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++    + G  ++++P L    LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVQSNMLQAGGQKITLPILTPTGLWRKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 T-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T  +  +   SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD YSFD+  E ++ +
Sbjct: 122 TAMLATTSPISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYSFDVCEETARET 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R+F +L +  + + A +G +GG +SHE+  ++  GE  +   K        
Sbjct: 182 YSVVNAAYDRLFKQLEVPFVKVNAATGMMGGSVSHEYHYVSPVGEDNLLQCKSC------ 235

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                    +  V       S   +     RG+EV H F  G K
Sbjct: 236 --------------------GFAGNSEVVMAPANCPSCSSSDLKEVRGVEVAHTFLLGDK 275

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   + MG YGIG  RV+AA +E       + WP  +AP+ + LI 
Sbjct: 276 YSKPLGATFLNTKGKPQSLVMGCYGIGITRVIAAALEVLSSDNELHWPKLLAPYDVCLIG 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGC-------DVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
            K   +   +  E I   L  +         ++  DD  E  IG +   A  LG PL ++
Sbjct: 336 PKQGSKEQPE-AEVIENELL-LNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLTIV 393

Query: 406 VGSKFV--SDSKVEIKHRLTGIREDMSLEEVINYASH 440
           VG+K +     K+E+     G   ++ L E +   + 
Sbjct: 394 VGAKAIRQDSPKLEVHT-SKGETLELDLSETLKLVAE 429


>gi|302671729|ref|YP_003831689.1| threonyl-tRNA synthetase ThrZ [Butyrivibrio proteoclasticus B316]
 gi|302396202|gb|ADL35107.1| threonyl-tRNA synthetase ThrZ [Butyrivibrio proteoclasticus B316]
          Length = 634

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/480 (15%), Positives = 146/480 (30%), Gaps = 81/480 (16%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K+ + ++QE   RD +    +L L   M  + + G+  WLP G K    +    RE Q R
Sbjct: 177 KHHIKMIQEALERDHKKIGAELDLF--MFDETAPGMPYWLPRGWKMYQALLKYSREIQER 234

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK--------------------- 102
            G  E++ P + +  LW+ SG +  Y   M  +   +                       
Sbjct: 235 HGYTEIAAPLVNNKKLWLISGHWAHYVNNMFMVPGVSGWLKADAEIPGILENNNDPTEEP 294

Query: 103 ------------------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
                              M   P +       ++    SY+ LP  + +  +  R E  
Sbjct: 295 KNIKIQAGSVIYNREQNDTMAAKPMNCPNAMMTYKRTNHSYKELPIRYSEYDVLHRKEKS 354

Query: 145 PRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            +  G+ R +EF   D ++F +     K     +      I+   G+        + P  
Sbjct: 355 GQMNGLFRVQEFRQDDDHTFVM-ESQIKEEIADVIAIADEIYSTFGVTY-RAELSTRPED 412

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                E    A+    ++   K                      I E   A Y    D+ 
Sbjct: 413 FMGDIEVWNRAEAALKEILDEKYGE---------------GGYEINEGDGAFYGPKIDL- 456

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GA 321
             ++ D+L    +     ++      FG         T++  DG      +    I    
Sbjct: 457 --QIKDALGREWQCGTVQLDFQLPHNFG--------LTYQAQDGTMQMPVVIHRAIYGSL 506

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R +  +IE+                    +          +  +++   L   G  V  
Sbjct: 507 ERFIGIIIENFKGVFPFWLSPYQVGIVPIRL-------EHNEYAKEVEQALMNAGIRVEA 559

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR-EDMSLEEVINYASH 440
           D     +  +         P  ++VG K  ++  V I  R +  + +++ L+ ++     
Sbjct: 560 DYSDNNMKEKIKKFKNYKDPYILVVGDKEAAERTVSINVRGSNKQVQNVPLDALVAMCKK 619


>gi|72383677|ref|YP_293032.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
 gi|114152229|sp|Q46GR7|SYP_PROMT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|72003527|gb|AAZ59329.1| prolyl-tRNA synthetase, bacterial [Prochlorococcus marinus str.
           NATL2A]
          Length = 596

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 120/420 (28%), Positives = 188/420 (44%), Gaps = 36/420 (8%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+  L  L++ P +A+I SH+L++R G + + + GIY+++PL  K L  + +I+ EE
Sbjct: 1   MRVSRLMLNTLRDVPAEADIISHQLLVRGGYVKRLTGGIYAYMPLLWKVLKKITSIVEEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            +  G ++  +P LQ +++W  SGR+ SY K    M  L DR  K +  GPTHEEV+T I
Sbjct: 61  LSTKGCLQTLLPQLQPSEIWERSGRWKSYTKGEGIMFSLKDRQGKELGLGPTHEEVITQI 120

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               I SY+ LP   +QIQ KFRDE+RPRFG+MRSREF+MKDAYSF       + +Y+ M
Sbjct: 121 ISQTIHSYKQLPINIFQIQTKFRDEIRPRFGLMRSREFIMKDAYSFHANENDLQSTYSDM 180

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  IF + GL  + + A+SG IGG  S EF+V A++GE  +  S D        +  
Sbjct: 181 RNAYENIFTKCGLDFVCVDADSGAIGGAASQEFMVTAESGEDLILISSDSKYGANQEKAV 240

Query: 238 DFDDIIS---------LNSIVEQWTAPYAATSDVHNEKLFD------SLPENK----RVS 278
              +            + +  ++        +D H  ++        +  +NK     VS
Sbjct: 241 SIIEEGKLLEPNKPSIIKTPNQKTIDELCNYNDFHPSQIVKVLAYLATCDDNKKYPVLVS 300

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKG---------ADGKDHYVQMGSYGIGAMRVVAAVI 329
            RG +  +      K S  +                      +  G  G      + A  
Sbjct: 301 IRGDQEINDIKLSNKISQELKQNVLDIRIISNEDMQKQGISNIPFGFIGPDLSDNLLAQS 360

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           ++       I  +S    K  +      D+        +          +  D    + G
Sbjct: 361 KAWEKKFIRIADNSAKDLKSFICGNNIKDEHKIFYNWNLINT-----VQMICDIRKAKPG 415



 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 99/190 (52%), Gaps = 4/190 (2%)

Query: 260 SDVHNEKLFDSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            D+   K  D    +K       RGIE+GHIF  GTKYS  ++ATF    G + +  MG 
Sbjct: 407 CDIRKAKPGDRCIHDKTQKLQECRGIEIGHIFQLGTKYSKSLNATFTNEKGVEDHFWMGC 466

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R+  A +E +HD  GIIWP S+APF + +I     +   +   E IY +L +  
Sbjct: 467 YGIGISRLAQAAVEQNHDDLGIIWPTSIAPFTVIIIIANIKNNDQKCLAEDIYQKLIQDR 526

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD  E+ G +F  ADL+G P +++ G +  S   VE+ +R T I E + L  V  
Sbjct: 527 VDVLLDDRDERAGIKFKDADLIGIPWRIVAG-REASSGLVELHNRKTKITELLDLNSVFK 585

Query: 437 YASHRFSNNR 446
             S  F+  +
Sbjct: 586 KLSEEFNTEK 595


>gi|58697298|ref|ZP_00372664.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536340|gb|EAL59818.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 580

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 74/391 (18%), Positives = 134/391 (34%), Gaps = 40/391 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
             +L  L+E   RD    +  + L    I + + G   W   G    + + + IR++   
Sbjct: 227 NAYLECLKEAEKRDHRKIAKDMDLF--HIQEEAVGQVFWHEQGYILYNVLESYIRKKLIN 284

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L S +LW +SG +D + + M  + +   K +   P +      IF SH +
Sbjct: 285 NGYFEVKTPILVSKELWEKSGHWDKFRENMFIVDESESKKLAIKPMNCPCHVQIFNSHTR 344

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F +  + +  +         
Sbjct: 345 SYRDLPIRMAEFGTCHRNESSGSLHGLMRVRGFTQDDAHIFCMEEQVNSETIKF-CDLLK 403

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            ++  LG   I ++    P       E                   D    +      + 
Sbjct: 404 EVYSELGFNEISVKFSDRPDVRAGDDE-----------------VWDRAEKALLEAVKEA 446

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                +     A Y    +     L D++  + +     ++       G        A +
Sbjct: 447 GLSYELSPGEGAFYGPKLEF---VLKDAIGRSWQCGTLQVDFILPERLG--------AFY 495

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            GADG  H+   +    +G       ++  ++ GK  +W        +++ N        
Sbjct: 496 IGADGHKHHPVMLHRAILGTFERFIGILIENYAGKFPVWLAPTQLAILTITN------EA 549

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                KI   L + G  V  D   E+I  + 
Sbjct: 550 DGYATKISNVLKEQGVRVKTDLTNEKISYKI 580


>gi|323692292|ref|ZP_08106531.1| threonyl-tRNA synthetase [Clostridium symbiosum WAL-14673]
 gi|323503617|gb|EGB19440.1| threonyl-tRNA synthetase [Clostridium symbiosum WAL-14673]
          Length = 653

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 144/445 (32%), Gaps = 36/445 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE-EQNRT 64
           Y   +     RD      ++ L T  +    +G+   +P G K +  +   + + E N  
Sbjct: 230 YLEHLEDIKKRDHNKLGREMRLFTT-VDVIGQGLPLLMPNGVKIVQRLQRWVEDLEDNEW 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G I    P +  +DL+  SG +D Y   M      + + +     P        ++++  
Sbjct: 289 GYIRTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEETDKEVFALRPMTCPFQYYVYKNDQ 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP  + +    FR+E      G+ R R+F + + +   + P+  +          
Sbjct: 349 HSYRELPLRYSETSTLFRNEDSGEMHGLTRVRQFTISEGHLI-IRPDQVEEELAGCLDLA 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +     LGL+             D+++           +    +++ +           +
Sbjct: 408 VHCLTTLGLQD------------DVTYRLSKWDPDNREKYLGDEEYWEKTQGKIRDLLVE 455

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +  +   A Y    D+  + ++      K  +   I            +      
Sbjct: 456 KNVPFTEADGEAAFYGPKIDIQAKNVY-----GKEDTMITI------QLDCAIAENFDMY 504

Query: 302 FKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           F   +G       +    +G      A +    +     +P  + P ++ ++ I    + 
Sbjct: 505 FIDQNGDKVRPYVIHRTSMGCYERTLAWLI---EKYAGKFPTWLCPEQVRVLPISDKYES 561

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++   L K G     D+  E+IG +     L   P  ++VG +  +D  V ++ 
Sbjct: 562 ---YAGEVAKELKKNGVFCSVDNRSEKIGYKIRETRLDKIPYMLVVGQQEEADKAVSVRS 618

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G      L E I          
Sbjct: 619 RFAGDEGVKPLGEFIEQICREIRTK 643


>gi|323487567|ref|ZP_08092859.1| hypothetical protein HMPREF9474_04610 [Clostridium symbiosum
           WAL-14163]
 gi|323399124|gb|EGA91530.1| hypothetical protein HMPREF9474_04610 [Clostridium symbiosum
           WAL-14163]
          Length = 653

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 144/445 (32%), Gaps = 36/445 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE-EQNRT 64
           Y   +     RD      ++ L T  +    +G+   +P G K +  +   + + E N  
Sbjct: 230 YLEHLEDIKKRDHNKLGREMRLFTT-VDVIGQGLPLLMPNGVKIVQRLQRWVEDLEDNEW 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G I    P +  +DL+  SG +D Y   M      + + +     P        ++++  
Sbjct: 289 GYIRTKTPLMAKSDLYKISGHWDHYKDGMFVLGDEETDKEVFALRPMTCPFQYYVYKNDQ 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP  + +    FR+E      G+ R R+F + + +   + P+  +          
Sbjct: 349 HSYRELPLRYSETSTLFRNEDSGEMHGLTRVRQFTISEGHLI-IRPDQVEEELAGCLDLA 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +     LGL+             D+++           +    +++ +           +
Sbjct: 408 VHCLTTLGLQD------------DVTYRLSKWDPDNREKYLGDEEYWEKTQGKIRDLLVE 455

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                +  +   A Y    D+  + ++      K  +   I            +      
Sbjct: 456 KNVPFTEADGEAAFYGPKIDIQAKNVY-----GKEDTMITI------QLDCAIAENFDMY 504

Query: 302 FKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           F   +G       +    +G      A +    +     +P  + P ++ ++ I    + 
Sbjct: 505 FIDQNGDKVRPYVIHRTSMGCYERTLAWLI---EKYAGKFPTWLCPEQVRVLPISDKYES 561

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++   L K G     D+  E+IG +     L   P  ++VG +  +D  V ++ 
Sbjct: 562 ---YAGEVAKELKKNGVFCSVDNRSEKIGYKIRETRLDKIPYMLVVGQQEEADKAVSVRS 618

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R  G      L E I          
Sbjct: 619 RFAGDEGVKPLGEFIEQICREIRTK 643


>gi|195336930|ref|XP_002035086.1| GM14112 [Drosophila sechellia]
 gi|194128179|gb|EDW50222.1| GM14112 [Drosophila sechellia]
          Length = 458

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 131/457 (28%), Positives = 210/457 (45%), Gaps = 48/457 (10%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+++D   
Sbjct: 3   KASRIFCPSLI-TPKNAVVKQTEQLSRSQKLLTELGLVKSGSNGTYQIMPMAQRSVDKFI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++    + G  ++++P L    LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  NLVQSNMQQAGGQKITLPILTPTGLWKKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 T-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T  +  +   SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD YSFD++ E ++ +
Sbjct: 122 TAMLATTSPISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYSFDVSEETARET 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R+F +L +  + + A +G +GG +SHE+  ++  GE  +            
Sbjct: 182 YSVVNSAYDRLFKQLEVPFVKVNAATGIMGGSVSHEYHYVSSVGEDNLLQCSSC------ 235

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                    +  V       S   +     RG+EV H F    K
Sbjct: 236 --------------------GFAGNSEVVKAPASCPSCNSSDLKEVRGVEVAHTFLLEDK 275

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   + MG YGIG  RV+AA +E       + WP  +AP+   LI 
Sbjct: 276 YSKPLGATFLNTSGKPQSLVMGCYGIGITRVIAAALEVLSSDHELHWPKLLAPYDACLIG 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGC-------DVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
            K   +      E I   L  +         ++  DD  E  IG +   A  LG PL ++
Sbjct: 336 PKQGSKEQPQ-AEVIENELL-LNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLTIV 393

Query: 406 VGSKFV--SDSKVEIKHRLTGIREDMSLEEVINYASH 440
           VG+K       K+E+     G   ++   E +   + 
Sbjct: 394 VGAKSARQDSPKLEVHT-SKGETYELDFSETLKLVAE 429


>gi|261203861|ref|XP_002629144.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239586929|gb|EEQ69572.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
          Length = 747

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/482 (16%), Positives = 143/482 (29%), Gaps = 68/482 (14%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ +  L  L+E   R+         L      + S G    LP G K  + +  ++R E
Sbjct: 292 KQMQEHLKFLEEAEKRNHLRIGKDQDLF--FFDEVSPGCPFLLPNGTKIFNALQKLLRSE 349

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F  
Sbjct: 350 YLKRGYQEVQSPNMYDVGIWRQSGHWQHYKDDMFKL-DIEKRTWALKPMNCPGHAIMFGH 408

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    +  K   + +F 
Sbjct: 409 KERSYRELPIRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCTEDQIMKE-IDGLFD 467

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G     ++  + P       E    A+             D+ +       
Sbjct: 468 FLRAIYGLFGFSF-KLKLSTRPEKYMGKIETWNYAEDQLRAALTKFKGNDWEVE------ 520

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS---- 295
                     E   A Y    D+    + D+L    + +   ++      F  +Y     
Sbjct: 521 ----------EGDGAFYGPKIDI---TIQDALKREFQCATIQLDYQMPVNFKLEYMTGET 567

Query: 296 ------LPMSATFKGA--------------------DGKDHYVQMGSYGIGAM-RVVAAV 328
                     A                          G+   V +    IG+  R    +
Sbjct: 568 GAKAKPTEKPAENPDEKPAGDAAKPDAPPTNSDEPGPGRARPVVIHRAIIGSFERFFGII 627

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           IE                    +  I        D  E++   L     +V  D  G  +
Sbjct: 628 IEHFGGKWPFWLSPRQILIVPVMPAIN-------DYVEELQQILKGDKLNVDIDISGNTM 680

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSN 444
             +     +  +    +VG++  S   V I++R     +     + LEE           
Sbjct: 681 QKKIRTGQIAQYNFIFVVGAQEKSTRTVNIRNRDDPSSQAKGSLVPLEEARVKLRALRKE 740

Query: 445 NR 446
            R
Sbjct: 741 RR 742


>gi|156842346|ref|XP_001644541.1| hypothetical protein Kpol_1052p30 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115186|gb|EDO16683.1| hypothetical protein Kpol_1052p30 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 463

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/433 (14%), Positives = 150/433 (34%), Gaps = 43/433 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIR-EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
             S G   +LP G K  + +   ++ +++++ G  E+  P +    LW +SG +++Y ++
Sbjct: 54  PISPGSVFFLPNGAKIFNKLVQFMKLQQEHKFGFKEVITPIIYRKSLWEQSGHWENYKED 113

Query: 93  MLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGV 149
           M ++   D + +     P +      IF+   +SY  LP          R+E      G+
Sbjct: 114 MFKVEGQDISKEEYGLKPMNCPGHCMIFKKFDRSYHELPLRLSDFSPLHRNEASGALSGL 173

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F   D + F    +  +             + R+   +     +S          
Sbjct: 174 TRVRKFHQDDGHIFCTKEQVEEEIIKC-LKMVDLCYSRVFNFNKSKNNDSSS-------- 224

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           +I+   T   +     +  +    +  +  +       I E   A Y    D+    + D
Sbjct: 225 YIIKLSTRPDKYIGDLEIWNHAEDTLKSILEKSGKKWDINEGDGAFYGPKIDIL---VKD 281

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAV 328
              +  +V+   ++    F    ++    +  +K  D        +     G++    A+
Sbjct: 282 HNNKTHQVATIQLD----FQLPERF----NLRYKDKDNSYKRPIMIHRAAFGSLERFIAM 333

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS--------------- 373
           +    D     WP  + P +  +I +    +      +++ ++L                
Sbjct: 334 LI---DSNEGKWPFWLNPRQAMIIPVNTKIKSHVSESKQLASKLRGESADLDDLTPVPFN 390

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               +V  D   E +G +   A +  +   +I+G + V   +  I+       + ++ +E
Sbjct: 391 SFHFNVDVDLRSEPVGYRIKDAIMKNYSYLIIIGDEEVETGRYAIRTSEDRRLQHLTEDE 450

Query: 434 VINYASHRFSNNR 446
           + +       N +
Sbjct: 451 IFDKFMKLEKNYK 463


>gi|198413603|ref|XP_002126928.1| PREDICTED: similar to prolyl-tRNA synthetase
           (mitochondrial)(putative) [Ciona intestinalis]
          Length = 435

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 131/436 (30%), Positives = 207/436 (47%), Gaps = 47/436 (10%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
            S  L+L++  I   SKGIY ++P   K+L+ + ++I E+     A ++ +  L   D+W
Sbjct: 33  RSANLLLQSSFISPSSKGIYHFMPPLVKSLEKLTSLIDEKMKNICAQKVQMSMLSGKDIW 92

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR---SHIKSYRNLPFTFYQIQL 137
             SGR+D++GKE++   +  +      PTHEE +  +     +   SYR+LP   YQ   
Sbjct: 93  SLSGRWDAFGKELIT-TNLGEAKHCLSPTHEEAVCKVLSQTFNKFLSYRHLPLRLYQTNT 151

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           KFR+E  P+ G++R REFLM D Y+FD T + +  +YN +   Y   F  L +     +A
Sbjct: 152 KFRNEPDPQRGLLRCREFLMNDLYTFDTTKKAAVETYNAVCNIYEEFFKELNIPVTKAQA 211

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            SG IGGD SHE+ +LA  GE  +F   D       SE T+ +  +     V+       
Sbjct: 212 GSGLIGGDFSHEYHILAGVGEDNIFICPDT-GQAWNSECTNIEKKLDTLKQVD------- 263

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                                  GIEVGH FY G KYS     +F   D K    +MG Y
Sbjct: 264 -----------------------GIEVGHTFYLGKKYSKMFKTSFLTPDSKPVPCEMGCY 300

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSK 374
           G+G  R++AA +E      G+ WP  +AP+K+ L+  K   +       A   ++ +L  
Sbjct: 301 GLGVTRILAACLEVLSTESGMRWPHKIAPYKVCLVLPKTGSKEFENGTAAVNNVFDKLQN 360

Query: 375 VGC---DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS----KVEIKHRLTGIR 426
                 DV  DD     IG +   A+L+G+PL ++ G K ++      +V I++    + 
Sbjct: 361 YPLLKNDVIIDDTPKRSIGWKTKHANLIGYPLVIVFG-KGLNSEEQYAEVIIQNPDQQLT 419

Query: 427 EDMSLEEVINYASHRF 442
           + + L+ V+ +    F
Sbjct: 420 KHVPLQNVVEFIHDYF 435


>gi|226366073|ref|YP_002783856.1| prolyl-tRNA synthetase [Rhodococcus opacus B4]
 gi|254782912|sp|C1B2Z4|SYP_RHOOB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226244563|dbj|BAH54911.1| prolyl-tRNA synthetase [Rhodococcus opacus B4]
          Length = 581

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 101/241 (41%), Positives = 144/241 (59%), Gaps = 1/241 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ SHKL++R G + + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RLSHLFLRTLRDDPADAEVPSHKLLVRAGYVRRIAPGVYSWLPLGLRVLREVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+S+P L   + +  S R+  YG+ + RL DR     + GPTHEE+     +  
Sbjct: 64  NGIGAQEISLPALLPREPYEASNRWTEYGEGLFRLKDRKGGDYLLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQ+Q K+RDE RPR G++R REF+MKD+YSFDLT EG   SY     +Y
Sbjct: 124 YNSYKDFPVTLYQVQTKYRDEERPRAGILRGREFVMKDSYSFDLTDEGLTESYRAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFD 240
            RIF RLG+K + + A SG +GG  S EF+  ++ GE     C +      + +  T   
Sbjct: 184 ERIFARLGVKYVIVSATSGAMGGSASEEFLAESEIGEDTYVRCLESGYAANVEAVKTLAP 243

Query: 241 D 241
           +
Sbjct: 244 E 244



 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 90/200 (45%), Gaps = 28/200 (14%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+   + V+ARGIE+GH+F  G KY+   S    G +GK     MG
Sbjct: 395 GTIEAAEVRGGDPSPDGAGELVAARGIEIGHVFQLGRKYTDVFSVDVLGENGKPVRPTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R+VA + E  HD KG+ WP  V+P  +  + I   D   R+  E + A L K 
Sbjct: 455 SYGVGVSRLVAVIAEQHHDDKGLRWPAEVSPADVH-VVIANKDDTAREGAEGLAADLDKA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLL------------GFPLQVIVGSKFVSDSKVEIKHRLT 423
           G +V  DD     G +F  ++LL            G             + KVE++ R T
Sbjct: 514 GLEVILDDRKASPGVKFKDSELLGVPLVVVVGRGWG-------------EGKVEVRDRFT 560

Query: 424 GIREDMSLEEVINYASHRFS 443
           G   +++ E  ++       
Sbjct: 561 GESREVAAESALSEIVKTVR 580


>gi|239608840|gb|EEQ85827.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis ER-3]
          Length = 747

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/482 (16%), Positives = 143/482 (29%), Gaps = 68/482 (14%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ +  L  L+E   R+         L      + S G    LP G K  + +  ++R E
Sbjct: 292 KQMQEHLKFLEEAEKRNHLRIGKDQDLF--FFDEVSPGCPFLLPNGTKIFNALQKLLRSE 349

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F  
Sbjct: 350 YLKRGYQEVQSPNMYDVGIWRQSGHWQHYKDDMFKL-DIEKRTWALKPMNCPGHAIMFGH 408

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    +  K   + +F 
Sbjct: 409 KERSYRELPIRMADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCTEDQIMKE-IDGLFD 467

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G     ++  + P       E    A+             D+ +       
Sbjct: 468 FLRAIYGLFGFSF-KLKLSTRPEKYMGKIETWNYAEDQLRAALTKFKGNDWEVE------ 520

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS---- 295
                     E   A Y    D+    + D+L    + +   ++      F  +Y     
Sbjct: 521 ----------EGDGAFYGPKIDI---TIQDALKREFQCATIQLDYQMPVNFKLEYMTGET 567

Query: 296 ------LPMSATFKGA--------------------DGKDHYVQMGSYGIGAM-RVVAAV 328
                     A                          G+   V +    IG+  R    +
Sbjct: 568 GAKAKPTEKPAENPDEKPAGDAAKPDAPPTNSDEPGPGRARPVVIHRAIIGSFERFFGII 627

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           IE                    +  I        D  E++   L     +V  D  G  +
Sbjct: 628 IEHFGGKWPFWLSPRQILIVPVMPAIN-------DYVEELQQILKGDKLNVDIDISGNTM 680

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRFSN 444
             +     +  +    +VG++  S   V I++R     +     + LEE           
Sbjct: 681 QKKIRTGQIAQYNFIFVVGAQEKSTRTVNIRNRDDPSSQAKGSLVPLEEARVKLRALRKE 740

Query: 445 NR 446
            R
Sbjct: 741 RR 742


>gi|254446533|ref|ZP_05060009.1| prolyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
 gi|198260841|gb|EDY85149.1| prolyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
          Length = 588

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 100/242 (41%), Positives = 149/242 (61%), Gaps = 8/242 (3%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK ++P L+E+P +AEI SHKL+LR G++ +   GIY++LPLG KAL+NV  +  EE N
Sbjct: 4   WSKNYIPTLKESPAEAEIDSHKLLLRAGLVRKVGSGIYAFLPLGTKALENVKRLCCEEMN 63

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMT 115
           R GA+E+ +P +  A+ W    R+++  + M        +     + A + GPTHEE++T
Sbjct: 64  RAGAMELLMPAVVPAEYWKAGPRWNAAREIMYQVASAGEKAEFPEEPAFVLGPTHEEIVT 123

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
            +      SYR++  TFYQ+Q KFR+E+RPR+G+MR+REF+MKD YSFD T E +  +Y 
Sbjct: 124 LLIGGEGMSYRDMGKTFYQVQTKFRNEIRPRYGLMRAREFIMKDGYSFDATDEEATATYK 183

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            M  +Y   F R GLK I + A++G +GG  SHEF+V A+ G+  V  +     +    E
Sbjct: 184 NMAKAYEAFFSRCGLKFISVEADTGVMGGAFSHEFMVPAEVGDDDVVYN-IESGYAANVE 242

Query: 236 NT 237
             
Sbjct: 243 KA 244



 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 4/189 (2%)

Query: 261 DVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMS--ATFKGADGKDHYVQMGS 316
           D    K  +  P         R IEVGHIF  GTKYS      A +   DG      MG 
Sbjct: 398 DFRKVKAGEPCPVSGKPLEIQRAIEVGHIFKLGTKYSENEEFGALYVDKDGNRQPSVMGC 457

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R + ++IE  HD  GI+WP +VAP+++ +  +    +       K+       G
Sbjct: 458 YGIGISRTLQSIIEQKHDKNGIVWPWAVAPYQVIITVLDPGMEEADTLAIKLGEAAEAAG 517

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V  DD  E+ G +F  ADL+G PL+V +G + + + +VE+K R +   + +++ +   
Sbjct: 518 ASVLVDDREERPGVKFKDADLIGIPLRVTIGGRGLKNGEVEMKWRDSDSVQKVAIADAKQ 577

Query: 437 YASHRFSNN 445
                    
Sbjct: 578 ALVEGIKEK 586


>gi|294886613|ref|XP_002771785.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239875547|gb|EER03601.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 820

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 78/468 (16%), Positives = 143/468 (30%), Gaps = 77/468 (16%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  K +   ++E   RD  +   K  L     H   S G   W   G    + +   IR 
Sbjct: 315 KMLKEYKRNVEEAMKRDHRLIGKKQDLF--FFHPTMSPGSCFWTSHGAVIYNKLVDFIRR 372

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E    G  E+  P + S  L+ +SG   +Y   M    +   +     P +      IF 
Sbjct: 373 EYRLRGFDEVITPNIFSEALFQQSGHCGNYKDNM-YSMNIEGETWFLKPMNCPGHCMIFD 431

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             ++SY+ LP       +  R+EL     G+ R R F   DA+ F    +          
Sbjct: 432 QKVRSYKELPIRMADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCRPDQVQDEIV-HAL 490

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                +++  G                   +F V   T   +   S+   D         
Sbjct: 491 EFLKFVYNTFG------------------FDFSVCLSTRPKKAIGSRAIWDTAESGLKNA 532

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF-------- 290
            +       +     A Y    D+    L D+L    +     ++      F        
Sbjct: 533 LEACGIDYDLNPGDGAFYGPKIDIR---LRDALNRYHQCGTIQLDFNLPIRFNLQYRIAE 589

Query: 291 --------------------GTKYSLPMSATFKG---------------ADGKDHYVQMG 315
                                 K S   SA  +                  G +  V + 
Sbjct: 590 TEESGDAHAASEAANSPVDEQQKGSTQSSAAVENVGSKAKADEITLGELKHGFERPVMIH 649

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
              +G++    A++    +  G  WP  ++P ++ ++ +        D  + +  +L ++
Sbjct: 650 RAILGSIERCTAILT---EHFGGKWPFWLSPRQVMVVPVSDK---YSDYADYVRKQLVRL 703

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           G +   D     +  +   A +  F    +VG K  +D  V ++ R T
Sbjct: 704 GYEADADLSTRTMNKKVREAQVAAFNYIAVVGEKEQNDLTVTLRKRDT 751


>gi|6322654|ref|NP_012727.1| Mst1p [Saccharomyces cerevisiae S288c]
 gi|549032|sp|P07236|SYTM_YEAST RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; Flags:
           Precursor
 gi|486345|emb|CAA82038.1| MST1 [Saccharomyces cerevisiae]
 gi|285813075|tpg|DAA08972.1| TPA: Mst1p [Saccharomyces cerevisiae S288c]
          Length = 462

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 146/447 (32%), Gaps = 45/447 (10%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSAD 78
           + S +  L   M    S G   +LP G K  + +   ++ +Q  + G  E+  P +    
Sbjct: 41  MVSQRQDLF--MTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKT 98

Query: 79  LWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           LW +SG +++Y  +M +    D   +     P +      IF    +SY  LP  F    
Sbjct: 99  LWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFS 158

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R+E      G+ R R+F   D + F    +     +N + +  +             
Sbjct: 159 PLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGS 218

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            AES          + +   T            +          ++      +     A 
Sbjct: 219 GAESN---------YFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAF 269

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QM 314
           Y    D+    + D L +  +V+   ++    F    ++       FK  D        +
Sbjct: 270 YGPKLDIM---VTDHLRKTHQVATIQLD----FQLPERFD----LKFKDQDNSYKRPIMI 318

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++    A++    D     WP  + P++  +I +   +    D C  +  +L  
Sbjct: 319 HRATFGSIERFMALLI---DSNEGRWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRN 375

Query: 375 V--------------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                            +V  D   E +G +   A L  +   +IVG + V   K  I+ 
Sbjct: 376 ELEADDMEPVPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRE 435

Query: 421 RLTGIR-EDMSLEEVINYASHRFSNNR 446
           R      E +++ ++         N +
Sbjct: 436 RDNRKSFEKLTMSQIWEKFIELEKNYK 462


>gi|225560803|gb|EEH09084.1| threonyl-tRNA synthetase [Ajellomyces capsulatus G186AR]
          Length = 750

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/486 (16%), Positives = 145/486 (29%), Gaps = 72/486 (14%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ +  L  L+E   R+         L      + S G    LP G K  + + A++R E
Sbjct: 291 KQMQEHLKFLEEAEKRNHLRIGKDQDLF--FFDEVSPGCPFLLPNGTKIFNALQALLRSE 348

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F  
Sbjct: 349 YRKRGYQEVQSPNMYDVGIWRQSGHWQHYKDDMFKL-DIEKRTWALKPMNCPGHAIMFGH 407

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +SYR LP       +  R+E      G+ R R+F   D + F    +  +   + +F 
Sbjct: 408 RERSYRELPLRIADFGVLHRNEASGALHGLTRVRKFQQDDTHIFCAEDQIMQE-IDGLFD 466

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               I+   G     ++  + P       E    A+             D          
Sbjct: 467 FLRAIYGLFGFSF-KLKLSTRPEKYMGKLETWNNAEDQLRAAMTKFKGND---------- 515

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYF------- 290
                   + E   A Y    DV    + D+L    + +   ++      F         
Sbjct: 516 ------WEVDEGDGAFYGPKIDV---TIQDALKREFQCATIQLDYQMPVNFKLEYMTGET 566

Query: 291 ------GTKYSLPMSATFKGA-------------------DGKDHYVQMGSYGIGAM-RV 324
                   K +   +A                         G+   V +    IG+  R 
Sbjct: 567 GAKAKPEEKSAGAPAAKTADKPAGDAAKPDVPPTNSDEPGPGRARPVVIHRAIIGSFERF 626

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +IE                    +  +        D  E++   L +   +V  D  
Sbjct: 627 FGIIIEHFGGKWPFWLSPRQILIVPVMPAVN-------DYVEELQRILKEDKLNVDIDIS 679

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASH 440
           G  +  +     +  +    +VG++  S   V I++R     +     + LEE       
Sbjct: 680 GNTMQKKIRTGQIAQYNFIFVVGAEEKSTRTVNIRNRDDPSSQAKGSLVPLEEARAKLRA 739

Query: 441 RFSNNR 446
                R
Sbjct: 740 LRKERR 745


>gi|151941725|gb|EDN60086.1| mitochondrial aminoacyl-tRNA synthetase, threonine [Saccharomyces
           cerevisiae YJM789]
 gi|190409649|gb|EDV12914.1| threonyl-tRNA synthetase, mitochondrial precursor [Saccharomyces
           cerevisiae RM11-1a]
 gi|323304221|gb|EGA57996.1| Mst1p [Saccharomyces cerevisiae FostersB]
 gi|323308307|gb|EGA61553.1| Mst1p [Saccharomyces cerevisiae FostersO]
 gi|323332690|gb|EGA74095.1| Mst1p [Saccharomyces cerevisiae AWRI796]
 gi|323354220|gb|EGA86064.1| Mst1p [Saccharomyces cerevisiae VL3]
          Length = 462

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 146/447 (32%), Gaps = 45/447 (10%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSAD 78
           + S +  L   M    S G   +LP G K  + +   ++ +Q  + G  E+  P +    
Sbjct: 41  MVSQRQDLF--MTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKT 98

Query: 79  LWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           LW +SG +++Y  +M +    D   +     P +      IF    +SY  LP  F    
Sbjct: 99  LWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFS 158

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R+E      G+ R R+F   D + F    +     +N + +  +             
Sbjct: 159 PLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGS 218

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            AES          + +   T            +          ++      +     A 
Sbjct: 219 GAESN---------YFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAF 269

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QM 314
           Y    D+    + D L +  +V+   ++    F    ++       FK  D        +
Sbjct: 270 YGPKLDIM---VTDHLRKTHQVATIQLD----FQLPERFD----LKFKDQDNSYKRPIMI 318

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++    A++    D     WP  + P++  +I +   +    D C  +  +L  
Sbjct: 319 HRATFGSIERFMALLI---DSNEGRWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRN 375

Query: 375 V--------------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                            +V  D   E +G +   A L  +   +IVG + V   K  I+ 
Sbjct: 376 EREADDMEPVPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRE 435

Query: 421 RLTGIR-EDMSLEEVINYASHRFSNNR 446
           R      E +++ ++         N +
Sbjct: 436 RDNRKSFEKLTMSQIWEKFIELEKNYK 462


>gi|28572736|ref|NP_789516.1| prolyl-tRNA synthetase [Tropheryma whipplei TW08/27]
 gi|81839165|sp|Q83HI1|SYP_TROW8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28410869|emb|CAD67254.1| prolyl-tRNA synthetase [Tropheryma whipplei TW08/27]
          Length = 601

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 96/232 (41%), Positives = 134/232 (57%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S +     +E+P   E   +  +LR G I Q   GI+SW+PLG K    +  IIR E 
Sbjct: 4   KVSDFLFRTFREDPATTESRGYGFLLRAGYIRQTGSGIFSWMPLGLKVRHKIENIIRYEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +  AIE+  P L SADL+ +SGR+  YG ++ RL DR     +  PTHEE  T + +  
Sbjct: 64  RQVNAIEVLFPALFSADLFKQSGRWSEYGDDIFRLKDRRQGDYLLAPTHEEAFTQMMKEI 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SYR+LP T YQIQ K+RDELRPR G++RSREF MKDAYSFDL  +G + SY     +Y
Sbjct: 124 CTSYRDLPRTVYQIQDKYRDELRPRAGLLRSREFSMKDAYSFDLDEKGLRQSYEAQKRAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
            +IF RL +  + ++A +G +GG +S EF+   + G+     + D   F   
Sbjct: 184 KKIFDRLEIDYVIVKANAGAMGGSVSEEFLHPTEMGDDTFVVTADGSAFNAE 235



 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 8/183 (4%)

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           T DV + K  D          RGIE+GH+F  G KYS  +       DG +  V MGSYG
Sbjct: 410 TLDVSSIKTGDKSEWGPVTVKRGIEIGHLFQLGLKYSNALGLKVLDKDGYNKAVFMGSYG 469

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+ A + E + D +G+ WP  +APF + ++ + +          ++   L+  G D
Sbjct: 470 IGVSRLFALIAEKNCDERGLKWPAVLAPFDLHVVLLSSARA-------ELIDSLTDCGLD 522

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD     G +F  A L+G P  +++G K   +  VE+  R    R  + L+E+I   
Sbjct: 523 VLVDDRRVSPGVKFTDAQLIGVPKIIVIGDKTRGED-VEVWDRANDQRTVLPLKEMIQGV 581

Query: 439 SHR 441
             R
Sbjct: 582 IQR 584


>gi|294941856|ref|XP_002783274.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239895689|gb|EER15070.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 837

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/468 (16%), Positives = 143/468 (30%), Gaps = 77/468 (16%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIRE 59
           +  K +   ++E   RD  +   K  L     H   S G   W   G    + +   IR 
Sbjct: 332 KMLKEYKRNVEEAMKRDHRLIGKKQDLF--FFHPTMSPGSCFWTSHGAVIYNKLVDFIRR 389

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E    G  E+  P + S  L+ +SG   +Y   M    +   +     P +      IF 
Sbjct: 390 EYRLRGFDEVITPNIFSEALFQQSGHCGNYKDNM-YSMNIEGETWFLKPMNCPGHCMIFD 448

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             ++SY+ LP       +  R+EL     G+ R R F   DA+ F    +          
Sbjct: 449 QKVRSYKELPIRMADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCRPDQVQDEIV-HAL 507

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                +++  G                   +F V   T   +   S+   D         
Sbjct: 508 EFLKFVYNTFG------------------FDFSVCLSTRPKKAIGSRAIWDTAESGLKNA 549

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF-------- 290
            +       +     A Y    D+    L D+L    +     ++      F        
Sbjct: 550 LEACGIDYDLNPGDGAFYGPKIDIR---LRDALNRYHQCGTIQLDFNLPIRFNLQYRIAE 606

Query: 291 --------------------GTKYSLPMSATFKG---------------ADGKDHYVQMG 315
                                 K S   SA  +                  G +  V + 
Sbjct: 607 TEESGDAHAASEAANSPVNDQQKGSTQSSAAVENVGSKAKADEITLGELRHGFERPVMIH 666

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
              +G++    A++    +  G  WP  ++P ++ ++ +        D  + +  +L ++
Sbjct: 667 RAILGSIERCTAILT---EHFGGKWPFWLSPRQVMVVPVSDK---YSDYADYVRKQLVRL 720

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           G +   D     +  +   A +  F    +VG K  +D  V ++ R T
Sbjct: 721 GYEADADLSTRTMNKKVREAQVAAFNYIAVVGEKEQNDLTVTLRKRDT 768


>gi|323336851|gb|EGA78113.1| Mst1p [Saccharomyces cerevisiae Vin13]
 gi|323347699|gb|EGA81963.1| Mst1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 462

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 146/447 (32%), Gaps = 45/447 (10%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSAD 78
           + S +  L   M    S G   +LP G K  + +   ++ +Q  + G  E+  P +    
Sbjct: 41  MVSQRQDLF--MTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKT 98

Query: 79  LWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           LW +SG +++Y  +M +    D   +     P +      IF    +SY  LP  F    
Sbjct: 99  LWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFS 158

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R+E      G+ R R+F   D + F    +     +N + +  +             
Sbjct: 159 PLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGS 218

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            AES          + +   T            +          ++      +     A 
Sbjct: 219 GAESN---------YFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAF 269

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QM 314
           Y    D+    + D L +  +V+   ++    F    ++       FK  D        +
Sbjct: 270 YGPKLDIM---VTDHLRKTHQVATIQLD----FQLPERFD----LKFKDQDNSYKRPIMI 318

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++    A++    D     WP  + P++  +I +   +    D C  +  +L  
Sbjct: 319 HRATFGSIERFMALLI---DSNEGRWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRN 375

Query: 375 V--------------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                            +V  D   E +G +   A L  +   +IVG + V   K  I+ 
Sbjct: 376 EREADDMEPVPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRE 435

Query: 421 RLTGIR-EDMSLEEVINYASHRFSNNR 446
           R      E +++ ++         N +
Sbjct: 436 RDNRKSFEKLTMSQIWEKFIELEKNYK 462


>gi|259147648|emb|CAY80898.1| Mst1p [Saccharomyces cerevisiae EC1118]
          Length = 462

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 146/447 (32%), Gaps = 45/447 (10%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSAD 78
           + S +  L   M    S G   +LP G K  + +   ++ +Q  + G  E+  P +    
Sbjct: 41  MVSQRQDLF--MTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKT 98

Query: 79  LWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           LW +SG +++Y  +M +    D   +     P +      IF    +SY  LP  F    
Sbjct: 99  LWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFS 158

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R+E      G+ R R+F   D + F    +     +N + +  +             
Sbjct: 159 PLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGS 218

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            AES          + +   T            +          ++      +     A 
Sbjct: 219 GAESN---------YFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAF 269

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QM 314
           Y    D+    + D L +  +V+   ++    F    ++       FK  D        +
Sbjct: 270 YGPKLDIM---VTDHLRKTHQVATIQLD----FQLPERFD----LKFKDQDNSYKRPIMI 318

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++    A++    D     WP  + P++  +I +   +    D C  +  +L  
Sbjct: 319 HRATFGSIERFMALLI---DSNEGRWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRN 375

Query: 375 V--------------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                            +V  D   E +G +   A L  +   +IVG + V   K  I+ 
Sbjct: 376 EREADDMEPVPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRE 435

Query: 421 RLTGIR-EDMSLEEVINYASHRFSNNR 446
           R      E +++ ++         N +
Sbjct: 436 RDNRKSFEKLTMSQIWEKFIELEKNYK 462


>gi|195587264|ref|XP_002083385.1| GD13380 [Drosophila simulans]
 gi|194195394|gb|EDX08970.1| GD13380 [Drosophila simulans]
          Length = 458

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 131/457 (28%), Positives = 212/457 (46%), Gaps = 48/457 (10%)

Query: 2   RRSKYFLPILQENPRDAEI-------ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           + S+ F P L   P++A +        S KL+   G++   S G Y  +P+ Q+++D   
Sbjct: 3   KASRIFCPALI-TPKNAVVKQTEQLSRSQKLLTELGLVKSGSNGTYQIMPMAQRSVDKCI 61

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +++    + G  ++++P L    LW ++GR +    E   + DR+ K  +  PTHEE +
Sbjct: 62  DLVQSNMQQAGGQKITLPILTPTGLWKKTGRLEGDISEFYMVRDRSGKQFLMSPTHEEAV 121

Query: 115 T-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           T  +  +   SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD Y+FD++ E ++ +
Sbjct: 122 TAMLATTSPISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYTFDVSEESARET 181

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           Y+ +  +Y R+F +L +  + + A +G +GG +SHE+  ++  GE  +            
Sbjct: 182 YSVVNSAYDRLFKQLEVPFVKVNAATGMMGGSVSHEYHYVSPVGEDNLLQCSSC------ 235

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                                    +  V       S   +     RG+EV H F  G K
Sbjct: 236 --------------------GFAGNSEVVTAPARCPSCNSSDLKEVRGVEVAHTFLLGDK 275

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS P+ ATF    GK   + MG YGIG  RV+AA +E       + WP  +AP+ + LI 
Sbjct: 276 YSKPLGATFLNTSGKPQSLVMGCYGIGITRVIAAALEVLSSDHELRWPKLLAPYDVCLIG 335

Query: 354 IKAHDQVCRDACEKIYARLSKVGC-------DVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
            K   +      E I   L  +         ++  DD  E  IG +   A  LG PL ++
Sbjct: 336 PKQGSKEQPQ-AEVIENELL-LNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLTIV 393

Query: 406 VGSKFV--SDSKVEIKHRLTGIREDMSLEEVINYASH 440
           VG+K       K+E+     G   ++   E +   + 
Sbjct: 394 VGAKSARQDSPKLEVHT-SKGETYELDFSETLKLVAE 429


>gi|319759028|gb|ADV70970.1| prolyl-tRNA synthetase [Streptococcus suis JS14]
          Length = 615

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 99/252 (39%), Positives = 137/252 (54%), Gaps = 4/252 (1%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
             +P L+E P DA + SH LMLR G + Q S GIYS+LPL  + ++    I+REE ++  
Sbjct: 1   MIIPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLPLANRVIEKAKNIMREEFDKID 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           AIE   P L SAD+W ESGRY++YG ++ +L +R     I GPTHEE +T + R  ++SY
Sbjct: 61  AIEFLAPALLSADIWRESGRYETYGDDLYKLKNREGSDFILGPTHEETVTLLARDAVQSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + LP   YQIQ K+RDE RPR G++R REF+MKD YSF  + E    +Y+    +Y  IF
Sbjct: 121 KQLPLNIYQIQPKYRDEKRPRNGLLRGREFIMKDGYSFHASYESLDQTYDDYKAAYEAIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIV----LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            R GL+   +  + G +GG  S EF+       D     V          IP +  +   
Sbjct: 181 TRAGLEFKAIIGDGGAMGGKDSQEFMAITPDRTDLDRWVVLDKSVASFEEIPEDVLEAFK 240

Query: 242 IISLNSIVEQWT 253
              L   V    
Sbjct: 241 AELLAWSVSGED 252



 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 16/199 (8%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                D+   K  +  P+   V    RGIE+GHIF  GT+YS  M+A     +G+   + 
Sbjct: 411 VTEYVDIREVKEGEPSPDGHGVLNFARGIEIGHIFKLGTRYSDSMNANILDENGRSMPII 470

Query: 314 MGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQV 360
           MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+ 
Sbjct: 471 MGCYGIGVSRLLSAVLEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEA 530

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  + I A L   G +V  DD  E++G +F+ +DL+G P++V VG K  +D  VE+K 
Sbjct: 531 AMELTQSIEASLVGAGYEVLTDDRNERVGVKFSDSDLIGLPIRVTVGKK-AADGIVEVKI 589

Query: 421 RLTGIREDMSLEEVINYAS 439
           + TG   ++ +++++    
Sbjct: 590 KGTGDTVEVHVDQLLETLQ 608


>gi|289064339|gb|ADC80545.1| proline aminoacyl-tRNA synthetase [Toxoplasma gondii]
          Length = 783

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/430 (18%), Positives = 142/430 (33%), Gaps = 72/430 (16%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA----DLWV 81
           +R+ MI  +   G Y   P      + V     +E  + G      P   S      L  
Sbjct: 350 VRSEMIEYYDISGCYIMRPWAFHIWEKVQRFFDDEIKKMGVENSYFPMFVSRHAQHKLEK 409

Query: 82  ESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +    D  +       PT E +M   +   I+S+R+LP    Q   
Sbjct: 410 EKDHVEGFSPEVAWVTHYGDSPLPEKIAIRPTSETIMYPAYAKWIRSHRDLPLKLNQWCS 469

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++ ++   T E +      +   Y R +            
Sbjct: 470 VVRWEFKQPTPFLRTREFLWQEGHTAHATEEEAWELVLDILELYRRWYE----------- 518

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                                E      I    S  E++     
Sbjct: 519 -------------------------------------ECLAVPVIKGEKSEGEKFAGGKK 541

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            T       +   +PEN     RGI+       GT ++      F+  +G    V   S+
Sbjct: 542 TT------TVEAFIPENG----RGIQAATSHLLGTNFAKMFEIEFEDEEGHKRLVHQTSW 591

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSK 374
           G    R +  +I +  D KG++ P  VA  ++ +I I   D+   +    C ++   L K
Sbjct: 592 GC-TTRSLGVMIMTHGDDKGLVIPPRVASVQVVIIPILFKDENTGEILGKCRELKTMLEK 650

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               V  DD      G ++   ++ G PL++ +G K ++     +  R TG    +S  +
Sbjct: 651 ADIRVRIDDRSNYTPGWKYNHWEVKGVPLRLELGPKDLAKGTARVVRRDTGEAYQISWAD 710

Query: 434 VINYASHRFS 443
           +         
Sbjct: 711 LAPKLLELME 720


>gi|111023587|ref|YP_706559.1| prolyl-tRNA synthetase [Rhodococcus jostii RHA1]
 gi|122955090|sp|Q0S235|SYP1_RHOSR RecName: Full=Prolyl-tRNA synthetase 1; AltName: Full=Proline--tRNA
           ligase 1; Short=ProRS 1
 gi|110823117|gb|ABG98401.1| proline--tRNA ligase [Rhodococcus jostii RHA1]
          Length = 581

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 119/387 (30%), Positives = 172/387 (44%), Gaps = 30/387 (7%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S  FL  L+++P DAE+ SHKL++R G + + + G+YSWLPLG + L  V  ++REE 
Sbjct: 4   RLSHLFLRTLRDDPADAEVPSHKLLVRAGYVRRIAPGVYSWLPLGLRVLREVERVVREEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           N  GA E+S+P L   + +  S R+  YG  + RL DR     + GPTHEE+     +  
Sbjct: 64  NGIGAQEISLPALLPREPYEASNRWTEYGDGLFRLKDRKGGDYLLGPTHEELFALTVKGE 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SY++ P T YQ+Q K+RDE RPR G++R REF+MKD+YSFDLT EG   SY     +Y
Sbjct: 124 YNSYKDFPVTLYQVQTKYRDEERPRAGILRGREFVMKDSYSFDLTDEGLTASYRAHRDAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFD 240
            RIF RLG+K + + A SG +GG  S EF+  ++ GE     C +      + +  T   
Sbjct: 184 ERIFSRLGVKYVIVSATSGAMGGSASEEFLAESEIGEDTYVRCLESGYAANVEAVKTLAP 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           +       V     P A   D  +     +L +    +  G                   
Sbjct: 244 EA------VPFDGLPAAKVHDTPDTPTIATLVDWANGADLGW------------------ 279

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T   AD   + +       G   ++   I    D +        +        +   D  
Sbjct: 280 TVTAADTLKNILVKTRQPGGKWELL--GIGVPGDREVDDKRLGASLEPAEFELLTEADFA 337

Query: 361 CRDACEKIY---ARLSKVGCDVFWDDM 384
                 K Y     L   G     D  
Sbjct: 338 ANPFLVKGYIGPKALQANGVRYLVDPR 364



 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 90/200 (45%), Gaps = 28/200 (14%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     V+ARGIE+GH+F  G KY+   S    G +GK     MG
Sbjct: 395 GTIEAAEVRDGDPSPDGAGALVAARGIEIGHVFQLGRKYTDVFSVDVLGENGKPVRPTMG 454

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R+VA + E  HD KG+ WP  V+P  +  + I   D+  R+  E + A L K 
Sbjct: 455 SYGVGVSRLVAVIAEQHHDEKGLRWPAEVSPADVH-VVIANKDETAREGAEGLAAELDKA 513

Query: 376 GCDVFWDDMGEQIGSQFAVADLL------------GFPLQVIVGSKFVSDSKVEIKHRLT 423
           G +V  DD     G +F  ++LL            G             + KVE++ R T
Sbjct: 514 GLEVILDDRKASPGVKFKDSELLGVPLVVVVGRGWG-------------EGKVEVRDRFT 560

Query: 424 GIREDMSLEEVINYASHRFS 443
           G   +++ E  ++       
Sbjct: 561 GESREVAAESALSEIVKAVR 580


>gi|302525268|ref|ZP_07277610.1| prolyl-tRNA synthetase [Streptomyces sp. AA4]
 gi|302434163|gb|EFL05979.1| prolyl-tRNA synthetase [Streptomyces sp. AA4]
          Length = 578

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 113/382 (29%), Positives = 170/382 (44%), Gaps = 21/382 (5%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S  FL  L+E+P DAE+ SH+L++R G + + + G YSWLPLG + L  V  ++REE N
Sbjct: 1   MSSLFLRTLREDPADAEVPSHRLLVRAGYVRRVAPGGYSWLPLGLRVLRRVEEVVREEMN 60

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             GA E+  P L   + +  + R+  YG  + RL DR     + GPTHEE+     +   
Sbjct: 61  AIGAQEIQFPALLPREPYEATNRWTEYGDNLFRLKDRKGADYLLGPTHEELFALTVKGEY 120

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            SY++ P T YQIQ K+RDE RPR G++R REF+MKD+YSFDL  EG + SY     +Y+
Sbjct: 121 SSYKDFPVTLYQIQTKYRDEARPRAGILRGREFVMKDSYSFDLDDEGLERSYQAHRDAYI 180

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           ++F RLG++ + + A SG +GG  S EF+ +A+ GE   F       +    E       
Sbjct: 181 KLFDRLGIEYVIVAATSGAMGGSASEEFLAVAENGE-DTFVRSTESGYAANVEAVVTPAP 239

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
            +          P A      N    ++L      +  G E      F    +L      
Sbjct: 240 AARPI----EGLPEAQVHHTPNTPTIETLVAFFNAAGLGRE------FTAADTLKNVLVK 289

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G   +  +G    G   V    +E++ +   +   +     K   +          
Sbjct: 290 TRQPGAKEWELLGIGVPGDREVDFKRLEAALEPAEVELLEEADFAKNPFLVKGYIGP--- 346

Query: 363 DACEKIYARLSKVGCDVFWDDM 384
                    L + G     D  
Sbjct: 347 -------KALQENGVRYLVDPR 361



 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/188 (34%), Positives = 107/188 (56%), Gaps = 4/188 (2%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D+ P+     V+ARGIE+GHIF  G KY+        G D K   + MG
Sbjct: 392 GTIEAAEVREGDASPDGHGTLVAARGIEIGHIFQLGRKYTDAFEVDALGPDSKPVRITMG 451

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYG+G  R+VA + E +HD +G++WP  V+PF +  + I   D+  R+  EK+ A L   
Sbjct: 452 SYGVGVSRLVAVLAEQNHDEQGLVWPREVSPFDVH-VVIAGKDETVREGAEKLAAELDAA 510

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G ++  DD     G +FA A+L+G P  ++VG + +++  VE+K R TG RE+++++ V+
Sbjct: 511 GLEIILDDRKATPGVKFADAELVGVPTILVVG-RGLANGLVEVKDRRTGEREEIAVDSVV 569

Query: 436 NYASHRFS 443
           ++ +    
Sbjct: 570 DHLAKLVR 577


>gi|256075323|ref|XP_002573969.1| prolyl-tRNA synthetase [Schistosoma mansoni]
 gi|238659161|emb|CAZ30202.1| prolyl-tRNA synthetase, putative [Schistosoma mansoni]
          Length = 472

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 114/425 (26%), Positives = 178/425 (41%), Gaps = 43/425 (10%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
            S KL+   G+I   S G+Y++ P   ++L  + +++     + GA  + +PTL    +W
Sbjct: 26  VSQKLLRLYGLIFSDSTGVYAFGPEVLRSLRKLESLVDNSMLQLGAQRVLLPTLGPRHIW 85

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
            +SGR+ +    + R+ DR        PTHEE +T+       SY++LP   YQI  KFR
Sbjct: 86  EKSGRWSTMQSSLFRVKDRLSHEYCLQPTHEEYITNFVACLNLSYKSLPVLVYQITSKFR 145

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           DE  P+ G++R REFLM+D Y+FD + E ++ +Y ++  +Y  +   L L  +   A+ G
Sbjct: 146 DEPHPKHGLVRGREFLMQDIYTFDASVETAEKTYKRVKTAYSDLMVNLELPYLVACADPG 205

Query: 201 PIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            +GG +S EF V AD GE ++  CSK  + F    E     +   L   +   + PY   
Sbjct: 206 NVGGLISEEFHVEADIGEDRILTCSKCSLKFNSELEGIYHYEGNYLQVKLPAPSVPYNLA 265

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                           +  +   +V H F  G +YS    AT++   G       G YG+
Sbjct: 266 ----------------QKYSMKFKVAHCFLLGERYSKCFDATYRSPSGSKLMFM-GCYGL 308

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------------AHDQVCRDACEK 367
           G  R++A  IE                     + I             A D V  D  + 
Sbjct: 309 GISRLLAVCIEHLTRVAFPDKSKDQITQLRWPVRIAPYSGAIVLQKEMAKDSVNPDELKY 368

Query: 368 IYARLSKVGC------DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI-- 418
           I   +           D+  DD  G  +G +      LG P  + V  K   D   E+  
Sbjct: 369 ILDTIQSDSINFKLPGDILVDDRMGLSLGRKILDQSRLGIPWILTV--KSQRDGTYELID 426

Query: 419 --KHR 421
             K R
Sbjct: 427 VYKDR 431


>gi|254692867|ref|NP_001157089.1| threonyl-tRNA synthetase, mitochondrial isoform 2 [Mus musculus]
 gi|14290460|gb|AAH08995.1| Tars2 protein [Mus musculus]
          Length = 697

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 138/451 (30%), Gaps = 83/451 (18%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      +  L     H+ S G   +LP G +  + + A IR E  R G  E+  PTL 
Sbjct: 305 RDHRRIGKEQELF--FFHELSPGSCFFLPRGTRVYNALVAFIRAEYARRGFSEVKTPTLF 362

Query: 76  SADLWVESGRYDSYGKEMLRLAD----------------RNDKAMIYGPTHEEVMTDIFR 119
           S  LW +SG ++ Y  +M  L                       +   P +      +F 
Sbjct: 363 STKLWEQSGHWEHYRADMFSLKPPGTDGVDNSQSGHPARCPKDTLALKPMNCPAHCLMFA 422

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +S+R LP          R E      G+ R   F   DA+ F   P   +       
Sbjct: 423 HRPRSWRELPVRLADFGALHRAEASGSLGGLTRLWRFQQDDAHIFCA-PHQLEAEIQGCL 481

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++  LG                    F +   T            D         
Sbjct: 482 DFLRCVYSVLGFS------------------FHLALSTRPPGFLGEPRLWDQA------- 516

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                                 +  +  L D+L    +     ++    F    ++    
Sbjct: 517 ----------------------EQIDVHLHDALGRPHQCGTIQLD----FQLPLRFD--- 547

Query: 299 SATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +KG  G  +  V +    +G++  +  V+    +  G  WP  ++P ++ +I ++  
Sbjct: 548 -LQYKGPAGTPECPVLIHRAVLGSVERLLGVLA---ESCGGKWPLWLSPLQVVVIPVRTE 603

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +   +   ++   L   G     D D G  +  +   A L  +  Q +VG +  S   V
Sbjct: 604 QE---EYARQVQQCLQAAGLVSDLDADSGLTLSRRVRRAQLAHYNFQFVVGQREQSQRTV 660

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++ R      +  L E +       +   P
Sbjct: 661 NVRTRDNRQLGERDLAESVQRLLELQNARVP 691


>gi|123965807|ref|YP_001010888.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
 gi|152112942|sp|A2BVH0|SYP_PROM5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|123200173|gb|ABM71781.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
          Length = 600

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 109/292 (37%), Positives = 156/292 (53%), Gaps = 10/292 (3%)

Query: 1   MRRSKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           MR +  F L  L++ P +AEI SH+L+L+ G I + + GIY+++P+  K ++ ++ II +
Sbjct: 1   MRVTTSFPLGTLRDTPSEAEIISHQLLLKGGYIRRVNSGIYAYMPIMLKVIEKISNIIEK 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTD 116
           E N  G  ++ +P L  A+LW  S R++ Y      M  L DR  K     PTHEEV+T+
Sbjct: 61  ELNNNGCSKLLLPQLHPAELWKRSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITN 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I    I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKD YSF  + E     Y K
Sbjct: 121 IASEIINSYKQLPLCFYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHSSKEDLSSFYEK 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           M  SY  IF   GL ++ + A+SG IGG  S EF+V AD GE  +  ++    +    E 
Sbjct: 181 MERSYENIFKNCGLDTVGVDADSGAIGGAASKEFMVTADAGEDYILFTESGS-YAANIEK 239

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                   +        +      +  N+K    + +   + A  I    IF
Sbjct: 240 AISLPSKEIP-----LKSFETEWLETPNQKSIVDICKENDLDASQIVKVVIF 286



 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 63/184 (34%), Positives = 91/184 (49%), Gaps = 4/184 (2%)

Query: 261 DVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N K  D +      +    RGIE+GHIF  G KYS  ++A F   DGK   + MG Y
Sbjct: 409 DIRNAKKGDRISLESNEELKEKRGIEIGHIFQLGQKYSEKLNAKFSDKDGKLKNLWMGCY 468

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+  A IE +HD  GI WP  ++PF+I +I     D       E+IY        
Sbjct: 469 GIGVTRIAQAAIEQNHDENGISWPIQISPFEILIIPTNLKDPYQTKLTEEIYKEFESKKI 528

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD   + G +F  ADL+G P Q+I+G   + + +VE   R +  +  +S + ++  
Sbjct: 529 DVLLDDRDVRAGVKFKDADLIGIPFQIIIGRDSI-NKEVEFICRSSKRKIKISSQNLLEK 587

Query: 438 ASHR 441
               
Sbjct: 588 FISE 591


>gi|124804231|ref|XP_001347941.1| threonine -- tRNA ligase, putative [Plasmodium falciparum 3D7]
 gi|23496195|gb|AAN35854.1|AE014840_2 threonine -- tRNA ligase, putative [Plasmodium falciparum 3D7]
          Length = 1013

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 84/492 (17%), Positives = 158/492 (32%), Gaps = 58/492 (11%)

Query: 2   RRSKY--FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           ++S+   +L  L+E   RD       L L      + S G   WLP G K  + +   IR
Sbjct: 512 KKSELVEYLKFLEEAKKRDHRNVGKILNLF-FFEKETSPGSCFWLPHGSKIYNKLIEFIR 570

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +E       E+  P + S DLW  SG Y +Y   M  L +  +K     P +      +F
Sbjct: 571 KEYRIRKYEEVISPNVFSCDLWKTSGHYQNYKDCMF-LFNVENKEWGMKPMNCPGHCLMF 629

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHS---- 173
           +    SYR+LP       +  R+E+     G+ R R F   D++ F       +      
Sbjct: 630 KQLNVSYRSLPVRLADFGVLHRNEISGSLSGLTRVRRFQQDDSHIFCSMEHIKQEVLNTL 689

Query: 174 ---------YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
                    +   +  +L    +  +  I     +     D  +   V     E      
Sbjct: 690 NFLFYVYNLFGFKYELFLSTRPKKFIGQISTWNLAEQHLKDALYAANVQWKINEGDGAFY 749

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVE---QWTAPYAATSDV------------------- 262
              +D  +           ++    +   ++   Y     V                   
Sbjct: 750 GPKIDILVKDSLNRTHQCGTIQLDFQLPVRFNLQYKNKEYVTNNEKNEKNEKNHDNDDNV 809

Query: 263 ----HNEKLFDSLPENKRVSARGIEVGHIFY----FGTKYSLPMSATFKG--ADGKDHYV 312
               +     D L  N++   +  +  +           +SL  +   +G    G +  +
Sbjct: 810 HNNNNYPINHDDLHNNEKKEFKDSQNHNEDKEHNNIHDNHSLKPNINEEGLLKKGFERPI 869

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    +G++    A++     GK   W          ++ I        D    +Y  L
Sbjct: 870 IIHRAILGSVERFVAILIEHTAGKLPFWLSPRQAI---VLPIGDK---YNDYANYVYETL 923

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMSL 431
                DV  D     +  +   A L  F   ++VG K ++ + V ++ R     +   ++
Sbjct: 924 HNNMFDVDLDTSVNTLNKKIREAQLKQFNYILVVGEKELTTNTVTLRDRDDQNNQHVYTI 983

Query: 432 EEVINYASHRFS 443
           +E+IN  +    
Sbjct: 984 QELINKFNKLLD 995


>gi|15605873|ref|NP_213250.1| prolyl-tRNA synthetase [Aquifex aeolicus VF5]
 gi|81816424|sp|O66690|SYP_AQUAE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|2983039|gb|AAC06648.1| proline-tRNA synthetase [Aquifex aeolicus VF5]
          Length = 570

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 112/235 (47%), Positives = 154/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YFL   +E P++AE  SH+L+L+ G I Q S GIY  LP   K L  V +IIR+E
Sbjct: 1   MRWSRYFLYTEKEEPKEAEAPSHRLLLKAGFIKQVSAGIYELLPPAYKVLKKVESIIRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R+GA E+ +  L   +LW E+GR+++YG+E+ +L DRN +    GPTHEE +TD+ R 
Sbjct: 61  MDRSGAQELLLTVLNPKELWEETGRWETYGEELFKLKDRNGREYCLGPTHEEEITDLVRR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQIQ+KFRDE RPRFG++R+REF+MKDAYSFD     +  SY  M  +
Sbjct: 121 VVRSYRQLPVILYQIQVKFRDEKRPRFGLIRAREFIMKDAYSFDTDDMSAMISYEAMKFA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y RIF++L L  I   A+ G IGG +SHEFI   D GE +V   ++   +   +E
Sbjct: 181 YQRIFNKLRLNVIMAEADVGQIGGKMSHEFIAFTDYGEAKVAYCENC-GYAANAE 234



 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 77/193 (39%), Positives = 115/193 (59%), Gaps = 3/193 (1%)

Query: 256 YAATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           Y    DV   +  D  P+        RG+E+GHIF  GT+YS PM A F   DGK+  + 
Sbjct: 378 YGEFVDVAEVREGDPCPKCGSPLKVRRGLELGHIFLLGTRYSEPMKAYFTDRDGKEKPII 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R++AA++E  HD KGI WP  VAPF++ +I +   D+  ++  EK+Y    
Sbjct: 438 MGCYGIGVSRILAALVEQYHDDKGIKWPTPVAPFELDIILLNTKDEEMKNVAEKLYLEAE 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G DV +DD  E  G +FA ADL+GFP +++VG K V + KVE++ R TG + D+ +E+
Sbjct: 498 EKGIDVIFDDREESPGFKFADADLVGFPYRIVVGKK-VKEGKVEVQSRHTGEKWDVEIEK 556

Query: 434 VINYASHRFSNNR 446
            I++   +   ++
Sbjct: 557 AIDFVKEKIEEDK 569


>gi|146340273|ref|YP_001205321.1| putative threonine tRNA synthetase (fragment) [Bradyrhizobium sp.
           ORS278]
 gi|146193079|emb|CAL77090.1| putative threonine tRNA synthetase (fragment) [Bradyrhizobium sp.
           ORS278]
          Length = 409

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 78/433 (18%), Positives = 145/433 (33%), Gaps = 44/433 (10%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      +L L    I + + G+  W P G      +   IR +  R G  E+  P L  
Sbjct: 5   DHRSLGPRLDL--WHIQEDAPGMVFWHPRGHALYRVLENFIRGKMRRLGYAEVRTPQLLP 62

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            DLW++SG ++ +G +M  L +  ++AM   P        IF  +++S+R LP  + +  
Sbjct: 63  LDLWMQSGHWEKFGAQMFALGE-GERAMALKPMSCPCHVQIFNRNLRSWRELPLRYAEFG 121

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              RDE      G+MR+R F   DA+ F    + +     +       ++   G  +  +
Sbjct: 122 SCHRDEPSGALHGLMRTRGFEQDDAHVFCRADDVAGE-VARFAALLSEVYAAFGFDAPEV 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              + P                      S    D+   +            +I     A 
Sbjct: 181 SLSTRPQLR-----------------AGSDASWDWAEQALAEAARSCGLSYAIQPGEGAF 223

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-M 314
           Y    +     L D L  + +     ++       G        A++  A G       +
Sbjct: 224 YGPKLEF---ALRDRLGRSWQCGTVQLDSVLPERLG--------ASYVAAHGARATPVLI 272

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               +G++    A++   H G    W           + +    +   D   K+   L  
Sbjct: 273 HHAVLGSIGRFIAMLLEHHAGALPFW------LSPDQVAVVPITRDQLDDALKLRELLFS 326

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
                     GE +  +   A     P+  +VG++  +   V ++ R  G    ++ +  
Sbjct: 327 AELRAVLSADGETLSRRIVAAHAASIPVVAVVGAREAAQGTVSLRERD-GTTSVLTWDRA 385

Query: 435 INYASHRFSNNRP 447
           ++    R   NRP
Sbjct: 386 VSTLRER---NRP 395


>gi|312374940|gb|EFR22399.1| hypothetical protein AND_15306 [Anopheles darlingi]
          Length = 467

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 134/439 (30%), Positives = 223/439 (50%), Gaps = 33/439 (7%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           LML  G++ Q   G    LP+ Q+A+     +I        A  +++P L  A+LW +SG
Sbjct: 35  LMLEQGLMRQAGNGTLHVLPVLQRAVQKAIDLIDRHMQSVDAQRITLPVLTPAELWRQSG 94

Query: 85  RYDSYGK--EMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRD 141
           R +      E+L+  DR+ K  I GPTHEE +T  +      SYR  P   YQI  KFRD
Sbjct: 95  RLNESDPPTELLQTKDRHGKMQILGPTHEESITALMAAIAPVSYRQFPLRLYQISTKFRD 154

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E++PRFG+MR++EFLMKD Y+FD+ P   + +Y  +  +Y R+F  +G+  + +  +SG 
Sbjct: 155 EMKPRFGLMRAKEFLMKDLYTFDVDPHRCRQTYETVNAAYGRLFSEIGVPFVKVAGDSGT 214

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           +GG LSHE+   ++ GE ++               T+ + +  + ++ ++  A   +T+ 
Sbjct: 215 MGGSLSHEYHFPSEVGEDELLQCDQC------GVRTNSEHLQKICALCDRCGAGKESTAS 268

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             + +             RGIEVGH F    +Y+ P+ A+    +GK   +QMG YGIG 
Sbjct: 269 TSSFE-----------RQRGIEVGHAFILEDRYTKPLGASCLQPNGKPTPLQMGCYGIGV 317

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKV--G 376
            R++AA +E     K + WP ++AP+++ ++  KA  +         +++Y  L     G
Sbjct: 318 TRLIAASLEVLSSEKELRWPLALAPYRVCIVTPKAGSKEESLVSPWVDRLYNLLHTAVPG 377

Query: 377 C--DVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVS---DSKVEIKHRLTGIREDMS 430
           C  DV  DD  +  IG +   A  +G+PL V++G+K  +     + E+ +   G  +D+S
Sbjct: 378 CQGDVIVDDRNQLTIGKRVLDARRMGYPLIVVIGAKAANPAGSERFELHNLHAGTEQDLS 437

Query: 431 LEEVINYASHRFSN--NRP 447
             ++        S   +RP
Sbjct: 438 YTDLAAAIGDVLSTTHHRP 456


>gi|310823910|ref|YP_003956268.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309396982|gb|ADO74441.1| Threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 397

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 130/412 (31%), Gaps = 40/412 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      +L L    + + + G+  W P G      +   +R E    G  E+  P +  
Sbjct: 6   DHRALGDRLDLF--HLQEEAPGMVFWHPRGFVLYQLLEERVRRELASGGYREVRTPQVLG 63

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +W  SG + ++   M  + D  ++     P        +F+    S+R+LP    +  
Sbjct: 64  QRIWESSGHWQNFRHGMF-VLDDGERPFAMKPVSCPGHIQLFQRLAPSFRSLPLRMAEFG 122

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           L  R+E      G+ R R+F   D + F +  + +         S    +   G +   +
Sbjct: 123 LVHRNESSGALHGLFRLRQFTQDDGHIFCMEEQVADE-VAAFCRSLRAFYRGFGFEDAQV 181

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              S P                           D    +       +     +     A 
Sbjct: 182 AFSSRPAQR-----------------AGDDALWDRAEAALLEAAGRVGLDCRMQPGEGAF 224

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QM 314
           Y    +     L D    + +     ++    F    ++ L     +  + G+      +
Sbjct: 225 YGPKLEFI---LKDRSGRDWQCGTIQLD----FVLPERFDLH----YVDSGGEKRRPAML 273

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++     ++    +    + P  +AP ++ ++ + A          ++   L  
Sbjct: 274 HRAIFGSVERFLGILL---EHHQGVLPAWLAPEQVRVLPVGADSH---AYAAEVQEHLLA 327

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            G  V  D  GE +  +   A     P  V+VG +  +   ++I+ R    R
Sbjct: 328 AGLRVEADARGETLSRRILEAHQDAVPFAVLVGPREQAGRSIQIRERGGAQR 379


>gi|164427281|ref|XP_964988.2| threonyl-tRNA synthetase, mitochondrial precursor [Neurospora
           crassa OR74A]
 gi|157071680|gb|EAA35752.2| threonyl-tRNA synthetase, mitochondrial precursor [Neurospora
           crassa OR74A]
          Length = 498

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 81/483 (16%), Positives = 155/483 (32%), Gaps = 77/483 (15%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P     P D      +  L    I  +S G   +LP G +  + +   +R++    G  
Sbjct: 47  VPTKPAAP-DHRDLGTQQELFMTSI--YSPGSPIFLPNGARIFNRLVEYLRKQYVHYGFQ 103

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----------KAMIYGPTHEEVMTD 116
           E+  PT+    LW +SG  ++Y  +M  +   +                  P +      
Sbjct: 104 EVITPTIYKKALWAKSGHLENYADDMFTVTSTSPSRADVTEAGEADEYGLKPMNCPGHCL 163

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF +  +SYR+LP  +       R+E+     G+ R R F   D + F   P   +   +
Sbjct: 164 IFAAQKRSYRDLPIRYADFSPLHRNEISGALSGLTRVRRFHQDDGHIFCR-PNQIEDEIS 222

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K      R++    L S  ++  + P     S E                   +    S 
Sbjct: 223 KTLEFIRRVYKDFRLGSYRLKLSTRPENHIGSLE-----------------DWEHAEGSL 265

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
               D+     ++ E   A Y    DV    L DS  +  + +   ++    F    ++ 
Sbjct: 266 KRALDNSGEPWTLNEGDGAFYGPKIDVI---LKDSDGKEHQTATIQLD----FQLPKRFE 318

Query: 296 LPMSA---------------TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           L   A                     G    V +    +G+   + A++    +     W
Sbjct: 319 LEYQAPAPELEAKGETTTDPELLAVSGPVRPVMIHRAVLGSAERMFALLI---EHYNGKW 375

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSK----------VGCDVFWDDMGEQIGS 390
           P  + P +  ++ +    +            L             G  V  DD    +  
Sbjct: 376 PFWLNPRQGIVLTVND-SEPVLQFARNTQKVLLGTDSADVHVSPSGLAVDLDDSARSLSL 434

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEI---KHRLTGIR-----EDMSLEEVINYASHRF 442
           +   A   G+ + ++VG K +++  V +       TG +       M+ EE++ +   + 
Sbjct: 435 KIREAKTKGYGMIIVVGPKDIANGTVTVDATGGLQTGDKPAQKNLVMTPEELLQFMKTKV 494

Query: 443 SNN 445
              
Sbjct: 495 DAY 497


>gi|38567275|emb|CAE76565.1| related to threonine--tRNA ligase [Neurospora crassa]
          Length = 497

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 81/483 (16%), Positives = 155/483 (32%), Gaps = 77/483 (15%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P     P D      +  L    I  +S G   +LP G +  + +   +R++    G  
Sbjct: 46  VPTKPAAP-DHRDLGTQQELFMTSI--YSPGSPIFLPNGARIFNRLVEYLRKQYVHYGFQ 102

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRND-----------KAMIYGPTHEEVMTD 116
           E+  PT+    LW +SG  ++Y  +M  +   +                  P +      
Sbjct: 103 EVITPTIYKKALWAKSGHLENYADDMFTVTSTSPSRADVTEAGEADEYGLKPMNCPGHCL 162

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           IF +  +SYR+LP  +       R+E+     G+ R R F   D + F   P   +   +
Sbjct: 163 IFAAQKRSYRDLPIRYADFSPLHRNEISGALSGLTRVRRFHQDDGHIFCR-PNQIEDEIS 221

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K      R++    L S  ++  + P     S E                   +    S 
Sbjct: 222 KTLEFIRRVYKDFRLGSYRLKLSTRPENHIGSLE-----------------DWEHAEGSL 264

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
               D+     ++ E   A Y    DV    L DS  +  + +   ++    F    ++ 
Sbjct: 265 KRALDNSGEPWTLNEGDGAFYGPKIDVI---LKDSDGKEHQTATIQLD----FQLPKRFE 317

Query: 296 LPMSA---------------TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           L   A                     G    V +    +G+   + A++    +     W
Sbjct: 318 LEYQAPAPELEAKGETTTDPELLAVSGPVRPVMIHRAVLGSAERMFALLI---EHYNGKW 374

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSK----------VGCDVFWDDMGEQIGS 390
           P  + P +  ++ +    +            L             G  V  DD    +  
Sbjct: 375 PFWLNPRQGIVLTVND-SEPVLQFARNTQKVLLGTDSADVHVSPSGLAVDLDDSARSLSL 433

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEI---KHRLTGIR-----EDMSLEEVINYASHRF 442
           +   A   G+ + ++VG K +++  V +       TG +       M+ EE++ +   + 
Sbjct: 434 KIREAKTKGYGMIIVVGPKDIANGTVTVDATGGLQTGDKPAQKNLVMTPEELLQFMKTKV 493

Query: 443 SNN 445
              
Sbjct: 494 DAY 496


>gi|172012|gb|AAA34808.1| thr-tRNA-synthetase [Saccharomyces cerevisiae]
          Length = 462

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 146/447 (32%), Gaps = 45/447 (10%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSAD 78
           + S +  L   M    S G   +LP G K  + +   ++ +Q  + G  E+  P +    
Sbjct: 41  MVSQRQDLF--MTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKT 98

Query: 79  LWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           LW +SG +++Y  +M +    D   +     P +      IF    +SY  LP  F    
Sbjct: 99  LWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFS 158

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R+E      G+ R R+F   D + F    +     +N + +  +             
Sbjct: 159 PLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGS 218

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            AES          + +   T            +          ++      +     A 
Sbjct: 219 GAESN---------YFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPSDGAF 269

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QM 314
           Y    D+    + D L +  +V+   ++    F    ++       FK  D        +
Sbjct: 270 YGPKLDIM---VTDHLRKTHQVATIQLD----FQLPERFD----LKFKDQDNSYKRPIMI 318

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++    A++    D     WP  + P++  +I +   +    D C  +  +L  
Sbjct: 319 HRATFGSIERFMALLI---DSNEGRWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRN 375

Query: 375 V--------------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                            +V  D   E +G +   A L  +   +IVG + V   K  I+ 
Sbjct: 376 ELEADDMEPVPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRE 435

Query: 421 RLTGIR-EDMSLEEVINYASHRFSNNR 446
           R      E +++ ++         N +
Sbjct: 436 RDNRKSFEKLTMSQIWEKFIELEKNYK 462


>gi|195978861|ref|YP_002124105.1| prolyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975566|gb|ACG63092.1| prolyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 613

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 107/320 (33%), Positives = 163/320 (50%), Gaps = 19/320 (5%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
             +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E ++ G
Sbjct: 1   MLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLAHRTIEKFKTIMRQEFDKIG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R  +KSY
Sbjct: 61  AVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDKSDFILGPTHEETFTTLVRDAVKSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + LP   YQIQ K+RDE RPR G++R+REF+MKD YSF  + +    +Y+    +Y  IF
Sbjct: 121 KQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHQSYDDLDVTYDAYRQAYEAIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGETQVFCSKDFMDFPIPSENTDF 239
            R GL    +  + G +GG  S EF+ +       D             D P        
Sbjct: 181 TRAGLDFKGIIGDGGAMGGKDSQEFMAITPDRTNLDRWLVLDKSIPSLADIPEEVLEEIK 240

Query: 240 DDIISLNSIVEQWTAP-----YAATSDVHNEKLF--------DSLPENKRVSARGIEVGH 286
            ++ S     E   A      YAA  ++   +          D L E +  + + I+   
Sbjct: 241 AELASWLVSGEDTIAYSSESSYAANLEMATSEYKPSSKVTALDDLVEIETPNCKTIDEVA 300

Query: 287 IFYFGTKYSLPMSATFKGAD 306
            F   T++ +  +  F    
Sbjct: 301 AFLDITEHQVIKTLLFMADH 320



 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/199 (34%), Positives = 105/199 (52%), Gaps = 16/199 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A  +D+   K  ++ P+   V    RGIE+GHIF  GT+YS  M+A     +G+   +
Sbjct: 409 FQAEYADIREVKEGETSPDGHGVLQFARGIEIGHIFKLGTRYSDSMAANILDENGRAVPI 468

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +APF + LI +   DQ
Sbjct: 469 VMGCYGIGVSRILSAVIEQHARLFVSKTPKGDYRYAWGINFPKELAPFDVHLITVNVKDQ 528

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D  EK+ A L   G DV  DD  E++GS+F+ +DL+G P++V +G K  ++  VEIK
Sbjct: 529 EAQDLTEKVEASLMAKGYDVLTDDRNERVGSKFSDSDLIGLPIRVTIGKK-AAEGIVEIK 587

Query: 420 HRLTGIREDMSLEEVINYA 438
            + TG   ++  + +I   
Sbjct: 588 IKATGDSIEVHADSLIETL 606


>gi|160915433|ref|ZP_02077644.1| hypothetical protein EUBDOL_01441 [Eubacterium dolichum DSM 3991]
 gi|158432553|gb|EDP10842.1| hypothetical protein EUBDOL_01441 [Eubacterium dolichum DSM 3991]
          Length = 553

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 106/294 (36%), Positives = 160/294 (54%), Gaps = 4/294 (1%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++EN +D +  S  L++R GMI + S GIY  +P+G++ L  +  I+REE +  GA E+ 
Sbjct: 1   MRENAKDEDSVSGNLLVRAGMIKKSSAGIYMIMPMGKRVLKKIEDIVREEMDAAGAQELL 60

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P L   +++  SGR D++G  M  L DR  K  + GPTHEE+ T       +SY++ P+
Sbjct: 61  MPALIPEEVYEISGRRDAFGSNMFALKDRYQKNYVLGPTHEELFTLAAMMKGRSYKDFPY 120

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             YQIQ KFRDE RPR+G++R+REF+MKDAYSFD+  E    SY KMF +Y +IF R  L
Sbjct: 121 NLYQIQTKFRDETRPRYGLIRTREFIMKDAYSFDIDNEHLHESYMKMFDAYKKIFDRCDL 180

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF---MDFPIPSENTDFDDIISLNS 247
               ++A++G +GG LS EF  + D GE  V   +      +  I       ++      
Sbjct: 181 NYKIVKADTGAMGGSLSEEFQAICDVGEDVVVTCEHCGFSSNLEITEVVDRAEECREALK 240

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            +E    P A T +    K FD   ++   +      G I+ F  K +  ++ T
Sbjct: 241 TMEIVETPNAKTIEE-VAKFFDKSCDDFVKTLIYNVDGKIYAFLLKGTRELNET 293



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 1/203 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   +N  ++ +     A     +E     +        +GIEVG+ F  G KY+  +  
Sbjct: 352 DHHIVNVNLQDFEVEMCADIAQVHEGDVCPVCGAPLSFCKGIEVGNTFKLGNKYAKALGL 411

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
            +  A+   H V+MG YG+G  R +A+++E  HD  GIIWP SVAP++++++ +   D+ 
Sbjct: 412 EYLDANNTLHPVEMGCYGLGLERTLASIVEQHHDDDGIIWPLSVAPYQVAIVIVSMKDEE 471

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++Y  L   G DV  DD  E+ G +F   +L+G P ++ VG + ++   VE++ 
Sbjct: 472 QVRIANELYETLKAEGYDVLLDDRKERPGVKFKDMELIGIPYRITVG-RGIAQGNVELRA 530

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R     E++++E V+ Y  ++  
Sbjct: 531 RGAHENEEVAIENVVTYLQNKLQ 553


>gi|116100417|gb|ABJ65563.1| Prolyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
          Length = 615

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 99/237 (41%), Positives = 144/237 (60%), Gaps = 2/237 (0%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
             +P L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++    I+REE  + G
Sbjct: 1   MLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKTIMREEFEKIG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R  +KSY
Sbjct: 61  AVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTVLVRDAVKSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    E    +Y     +Y  IF
Sbjct: 121 KQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDAYSFHQNYEDLDVTYEDYRKAYEAIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            R GL+   +  + G +GG  S EF+ +    E         +D  I S +   +D+
Sbjct: 181 TRAGLEFKAIIGDGGAMGGKDSQEFMAVTP--ERTDLNRWVVLDKSIASLDEIPEDV 235



 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 409 FKAEYVDIRKVKEGEISPDGQGVLQFARGIEIGHIFKLGTRYSESMGANVLDENGRAVPI 468

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +AP+ + LI +   D+
Sbjct: 469 IMGCYGIGVSRILSAVIEQHARLFVNKTPKGQYRYAWGINFPKELAPYDVHLITVNTKDE 528

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +++ A L+  G DV  DD  E++GS+F+ +DL+G P++V VG K  S+  VE+K
Sbjct: 529 EANALTDRLEAALAAEGYDVLIDDRNERVGSKFSDSDLIGLPIRVTVGKK-ASEGVVEVK 587

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   +++ + +I   +
Sbjct: 588 IKATGDTIEVNADNLIETLA 607


>gi|157412925|ref|YP_001483791.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
 gi|166980140|sp|A8G3M4|SYP_PROM2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157387500|gb|ABV50205.1| Prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
          Length = 600

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 102/241 (42%), Positives = 144/241 (59%), Gaps = 5/241 (2%)

Query: 1   MRRSKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           MR +  F L  L++ P +AEI SH+L+L+ G I + + GIY+++P+  + ++ ++AII  
Sbjct: 1   MRVTTSFPLGTLRDTPSEAEIISHQLLLQAGYIRRVNSGIYAYMPIMLRVIEKISAIIER 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTD 116
           E N  G  ++ +P L  ADLW +S R++ Y      M  L DR  K     PTHEEV+T 
Sbjct: 61  ELNSIGCTKLLLPQLHPADLWRKSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITS 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I    I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKD YSF  + +     Y K
Sbjct: 121 IASETINSYKQLPQCFYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHSSEKDLASFYEK 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +  +Y  IF   GL+++ + A+SG IGG  S EF+V AD GE  +  +K    +    E 
Sbjct: 181 VGNAYENIFKSCGLETVGVEADSGAIGGASSKEFMVTADAGEDSILFTKSGS-YAANIEK 239

Query: 237 T 237
            
Sbjct: 240 A 240



 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 4/184 (2%)

Query: 261 DVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N K  D +    + +    +GIE+GHIF  G KYS  ++A F   DG    + MG Y
Sbjct: 409 DIRNAKKGDKISIANDEELKEKKGIEIGHIFQLGQKYSEKLNAKFSDKDGTLKNLWMGCY 468

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+  A IE +HD KGI WP  ++PF++ +I     D +  +  E+IY        
Sbjct: 469 GIGVTRIAQAAIEQNHDQKGICWPIQISPFEVIIIPTNLKDPIQSELTEQIYNNFLINKI 528

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD  ++ G +F  A+L+G P Q+I+G   V + +VE+  R    +  +S ++++  
Sbjct: 529 DVLLDDRNDRAGVKFKDAELIGIPFQIIIGRDSV-NKEVELLSRTNNTKFKISTDKLLET 587

Query: 438 ASHR 441
               
Sbjct: 588 FISE 591


>gi|316965047|gb|EFV49888.1| threonyl-tRNA synthetase, cytoplasmic [Trichinella spiralis]
          Length = 714

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 74/466 (15%), Positives = 159/466 (34%), Gaps = 60/466 (12%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +  + +E   RD      +  L   + H+ S G   + P G    + +   +R++
Sbjct: 279 KQLKLWEKMREEAASRDHRKLGRQQELF--IFHELSPGSAFFFPRGAYIYNTLVEFLRKQ 336

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW  SG +  Y K M ++    +      P +      +F +
Sbjct: 337 YRKRGFREVITPNIYNSRLWETSGHWQHYAKNMFKIEIEKEL-FGLKPMNCPGHCLMFAT 395

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +++Y+ LP  F    +  R+EL     G+ R R F   DA+ F    + +         
Sbjct: 396 GLRTYKELPLRFADFGVLHRNELSGALSGLTRVRRFQQDDAHIFCRQDQIASE-IEGCLD 454

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++  LG   + +   + P                           D          
Sbjct: 455 FLRFVYETLGFS-MKLYLSTRP-----------------DDFMGDVKTWDEAEAQLQCAL 496

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +      ++     A Y    D+    + D++    + +   ++    F    ++ L   
Sbjct: 497 EKFKLPWTLNAGDGAFYGPKIDII---VLDAMQRQHQCATIQLD----FQLPVRFDLHY- 548

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                   K   V +    +G++  + AV+    +     WP  ++P +  +I +     
Sbjct: 549 --VDENHVKQRPVIIHRAVLGSIERMIAVLT---ENFAGKWPFWLSPRQAMVIPV---HP 600

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              D   ++  ++   G +   D D  + +  +   A L  +   ++VG+K   +S V I
Sbjct: 601 EFDDYALQVQQKIFDAGFECDVDVDASDTMKKKIRNAQLGKWNFILVVGAKEKENSSVNI 660

Query: 419 KHRLT-------------------GIREDMSLEEVINYASHRFSNN 445
           + R                      +  + SLE++I   +    N 
Sbjct: 661 RTRDNAVCWMKIYYLYNNVINIFLKVLGEYSLEKLIEKFNFLKENY 706


>gi|261212071|ref|ZP_05926357.1| prolyl-tRNA synthetase [Vibrio sp. RC341]
 gi|260838679|gb|EEX65330.1| prolyl-tRNA synthetase [Vibrio sp. RC341]
          Length = 546

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 106/265 (40%), Positives = 150/265 (56%), Gaps = 20/265 (7%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           MLR GMI + + G+Y+WLP G + L  V  I+R+E +  GAIE  +P +Q  +LW E+GR
Sbjct: 1   MLRAGMIRKLASGLYTWLPTGLRVLRKVETIVRQEIDNAGAIETLMPVVQPFELWEETGR 60

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            +  G E+LR  DR+++  +  PT EEV+T + R+ + SY+ LP   YQIQ KFRDE RP
Sbjct: 61  SEKMGPELLRFTDRHERPFVLSPTAEEVITALVRNEVNSYKQLPLNLYQIQTKFRDERRP 120

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           RFGVMR+REF M DAYSFD+  +G + SY+ M  +Y + F R+GL   P+ A+SG IGG+
Sbjct: 121 RFGVMRAREFSMMDAYSFDIDKDGLQKSYDAMHAAYCKAFDRMGLDYRPVLADSGAIGGN 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSEN-------------------TDFDDIISLN 246
            S EF VLA++GE  +       D+    E                     D  +  ++ 
Sbjct: 181 GSQEFHVLAESGEDLIVF-STESDYAANIEKAEALAPATEAAAPTQEMTLVDTPNAKTIA 239

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSL 271
            +VEQ   P   T      K  D++
Sbjct: 240 ELVEQHGLPIEKTVKTLFVKASDAI 264



 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 68/190 (35%), Positives = 112/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  GT YS  M+     ++GK+  ++M
Sbjct: 357 GKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKMNCGVLDSNGKNVILEM 416

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +     +  ++A EK+YA L+
Sbjct: 417 GCYGIGVSRVVAAAIEQNHDDYGIIWPDALAPFQVAIVPMNMHKSERVQEAAEKLYAELT 476

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F+  +L+G P  +I+G + + +   E K+R  G +E +++E 
Sbjct: 477 AAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGHFEYKNRRQGEKEAVAMES 536

Query: 434 VINYASHRFS 443
           +I++   + +
Sbjct: 537 IIDFIQAKLA 546


>gi|330833575|ref|YP_004402400.1| prolyl-tRNA synthetase [Streptococcus suis ST3]
 gi|329307798|gb|AEB82214.1| prolyl-tRNA synthetase [Streptococcus suis ST3]
          Length = 615

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 99/252 (39%), Positives = 137/252 (54%), Gaps = 4/252 (1%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
             +P L+E P DA + SH LMLR G + Q S GIYS+LPL  + ++    I+REE ++  
Sbjct: 1   MIIPTLREMPSDASVISHALMLRAGYVRQISAGIYSYLPLANRVIEKAKNIMREEFDKID 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           AIE   P L SAD+W ESGRY++YG ++ +L +R     I GPTHEE +T + R  ++SY
Sbjct: 61  AIEFLAPALLSADIWRESGRYETYGDDLYKLKNREGSDFILGPTHEETVTLLARDAVQSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + LP   YQIQ K+RDE RPR G++R REF+MKD YSF  + E    +Y+    +Y  IF
Sbjct: 121 KQLPLNIYQIQSKYRDEKRPRNGLLRGREFIMKDGYSFHASYESLDQTYDDYKAAYEAIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIV----LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            R GL+   +  + G +GG  S EF+       D     V          IP +  +   
Sbjct: 181 TRAGLEFKAIIGDGGAMGGKDSQEFMAITPDRTDLDRWVVLDKSVASFEEIPEDVLEAIK 240

Query: 242 IISLNSIVEQWT 253
              L   V    
Sbjct: 241 EELLAWSVSGED 252



 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 16/199 (8%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                D+   K  +  P+   V    RGIE+GHIF  GT+YS  M+A     +G+   + 
Sbjct: 411 VTEYVDIREVKEGEPSPDGHGVLNFARGIEIGHIFKLGTRYSDSMNANILDENGRSMPII 470

Query: 314 MGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQV 360
           MG YGIG  R+++AV+E                   GI +P  +APF + LI +   D+ 
Sbjct: 471 MGCYGIGVSRLLSAVLEQHARLFVNKTPKGEYRYAWGINFPKELAPFDVHLIPVNVKDEA 530

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  + I A L   G +V  DD  E++G +F+ +DL+G P++V VG K  +D  VE+K 
Sbjct: 531 AMELTQSIEASLVGAGYEVLTDDRNERVGVKFSDSDLIGLPIRVTVGKK-AADGIVEVKI 589

Query: 421 RLTGIREDMSLEEVINYAS 439
           + TG   ++ +++++    
Sbjct: 590 KGTGDTVEVHVDQLLETLQ 608


>gi|294155633|ref|YP_003560017.1| threonine--tRNA ligase [Mycoplasma crocodyli MP145]
 gi|291600202|gb|ADE19698.1| threonine--tRNA ligase [Mycoplasma crocodyli MP145]
          Length = 580

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 69/442 (15%), Positives = 138/442 (31%), Gaps = 32/442 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L IL++   RD      ++ L T       +G   WL  G    + V  +I +   + G
Sbjct: 169 YLAILEDRKERDHRKIGKEMKLFT-FSKLAGQGFPIWLEDGMAIHNEVKKLILKMDRKYG 227

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P      L+  SG    Y  +M +  +   + +   P         +++  +SY
Sbjct: 228 FREVLTPHFGEETLYKISGHLAHYKDDMFKPLEVEGEKLYPRPMTCPHHIICYKTEKRSY 287

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           R+LP  + +    +R E       +     ++       L P+  ++ +  M+       
Sbjct: 288 RDLPIRYSEQSQLYRYEKSGALTGLERVRGMLLTEGHIFLRPDQIENEFKTMYSLIKETL 347

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             L +K   +                        + F      +          +D+   
Sbjct: 348 DLLKIKINYISLSLRDKNDKE-------------KYFDDDKMWNNSEEQLRKVLNDLNVQ 394

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                   A Y    D+   ++F SL     +S   ++    F   T++       +   
Sbjct: 395 YEEKVGEAAFYGPKIDI---QIFTSLGHEITISTLQLD----FLLPTRF----EMKYTDK 443

Query: 306 DGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           DG +     +    IG      A +     G    W        I +  I          
Sbjct: 444 DGNEKTPVLLHRGLIGTYERFVATLLEQTKGVLPFWLAPKQVTIIPVHEINN-----LTY 498

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++IY  L      V  DD  E++  +   A +     Q+I+G +  ++  +  +     
Sbjct: 499 SKEIYNTLFDHDFRVSLDDREERLSKKMREAQISKSKYQLILGDEEQNNKTISYRKYGEN 558

Query: 425 IREDMSLEEVINYASHRFSNNR 446
                +++E I   +    N R
Sbjct: 559 STTTTTIDEFIKMINEDRMNYR 580


>gi|73981321|ref|XP_860741.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 4
           [Canis familiaris]
          Length = 695

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 84/460 (18%), Positives = 147/460 (31%), Gaps = 84/460 (18%)

Query: 8   LPILQENPRDAEIASHKLMLRT---GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           L   +E   +AE+  H+ + +       H+ S G   +LP G +  + + A IR E  R 
Sbjct: 290 LRAWEEWKGEAELRDHRRIGKAQELFFFHELSPGSCFFLPRGTRVYNALVAFIRAEYTRR 349

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKAMIYGP 108
           G  E+  PTL SA LW  SG ++ Y ++M                      +   +   P
Sbjct: 350 GFSEVKTPTLFSAKLWELSGHWEHYQEDMFVLQPPGSDRLASSLSVCSTSHSTDTLALKP 409

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTP 167
            +      +F    +S+R LP       +  R E      G+ R R F   DA+ F   P
Sbjct: 410 MNCPAHCLMFAHRPRSWRELPLRLADFGVLHRAEASGSLGGLTRLRCFQQDDAHIFCA-P 468

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +  +            ++  LG         + P G                        
Sbjct: 469 DQLEEEIQGCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------LGESCL 510

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            D                               +  +  L D+L    +     ++    
Sbjct: 511 WDQA-----------------------------EQIDVHLHDALGRPHQCGTIQLD---- 537

Query: 288 FYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           F    ++       +KG  G  +  V +    +G++  +  V+    +  G  WP  ++P
Sbjct: 538 FQLPLRFD----LQYKGQAGVLERPVLIHRAVLGSVERMLGVLA---ESYGGKWPLWLSP 590

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVI 405
           F++ +I +        +   +   RL   G     D D G  +  +   A L  +  Q +
Sbjct: 591 FQVVVIPVG---AEQEEYAREAQQRLQAAGLVCDLDADSGLTLSRRVRRAQLAHYNFQFV 647

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           VG K  S   V I+ R      +  L E +       +  
Sbjct: 648 VGQKEQSKKTVNIRTRDNRQLGERDLTEAVQRLLELQNTR 687


>gi|282164523|ref|YP_003356908.1| prolyl-tRNA synthetase [Methanocella paludicola SANAE]
 gi|282156837|dbj|BAI61925.1| prolyl-tRNA synthetase [Methanocella paludicola SANAE]
          Length = 474

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 159/413 (38%), Gaps = 71/413 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRL 96
           GIY W P G      V  ++R   +     E   P L    +L  ES     +  E+  +
Sbjct: 36  GIYVWYPFGFSIRKKVYNMLRALMD-VDHQECYFPMLIPKPELLKESEHIKGFEDEVYWV 94

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                   +  +   PT E  +  +++  I+S+ +LP   YQI   FR E +    ++R 
Sbjct: 95  THGGLSPLEIPLALRPTSETAIYPMYKLWIRSHADLPLKLYQIVNTFRYETKQTRPLIRL 154

Query: 153 REFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           RE    K+A++   T E ++   ++    Y   F +L +  +  +               
Sbjct: 155 REITSFKEAHTAHATWEDAEKQVHEAMDLYSDFFTKLSVPFVINK--------------- 199

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                                   W     A   +  + L  + 
Sbjct: 200 -------------------------------------RPDWDKFPGADYTMAFDTLMPN- 221

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   R +++G + + GTK++     T++   G+  YV    YGI + R +AAVI  
Sbjct: 222 -------GRSLQIGTVHHLGTKFAKTYDITYEDDKGERQYVNQTCYGI-SERCIAAVIGI 273

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
             D KG++ P + AP ++ +I I      +   D C K+ A L+  G     DD  E+ G
Sbjct: 274 HGDNKGLVLPPNAAPTQVVIIPIVFKSGGEEVLDVCRKVKAILNDSGITAVLDDTNERPG 333

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +++   ++ G P ++ +G + + ++ V +  R  G+++ + ++ +     ++ 
Sbjct: 334 AKYYKWEMKGVPFRIEIGPRDIKNNAVMLVRRD-GVKQSIPMDGLSQTVQNKL 385


>gi|145594337|ref|YP_001158634.1| prolyl-tRNA synthetase [Salinispora tropica CNB-440]
 gi|189083512|sp|A4X5V6|SYP_SALTO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145303674|gb|ABP54256.1| prolyl-tRNA synthetase [Salinispora tropica CNB-440]
          Length = 595

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 97/269 (36%), Positives = 145/269 (53%), Gaps = 2/269 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  F   L   P  +E   H+L+ R  M+ Q  +GI+++LPLG + +  + A++R E
Sbjct: 1   MKMSTMFGATLHTAPGRSESEGHQLLQRAAMLRQVGQGIFAYLPLGWRTIRKIEAVLRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+S+P +  A+LW ++GRY + G E+ R  DR  + ++   THEE++T + RS
Sbjct: 61  LERVGGQEVSMPVVNPAELWKQTGRYFTIGPELARFRDRRGRDLVLAMTHEELVTFLGRS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SYR+LP   +Q+Q KFRD+ RPR G++R REF+MKDAYSFD+   G    Y   + +
Sbjct: 121 EIESYRHLPRMVFQLQTKFRDDPRPRAGLIRVREFVMKDAYSFDVDAAGLAARYRAQYQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL IF R GL    + ++ G +GG L+HEF+ L   GE  +               T   
Sbjct: 181 YLTIFRRCGLPVAAVLSDVGMMGGSLAHEFVYLTPIGEDTLLICDSCGFAANREAATFGK 240

Query: 241 DIISLNSIVE--QWTAPYAATSDVHNEKL 267
              S     E  +   P A T +     L
Sbjct: 241 PAPSTAPWAELAEIATPGATTIEALTAAL 269



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/190 (32%), Positives = 104/190 (54%), Gaps = 2/190 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T D+   +  D+  E   +  +ARG+EVG IF  GT+YS  + A +  ADG+   + MG 
Sbjct: 387 TGDITAARAGDACAECGSELRTARGVEVGQIFKLGTRYSTALGAEYLDADGQRKPLTMGC 446

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R++A + E   D +G+  P ++AP+++ L  +        +   ++Y  L   G
Sbjct: 447 YGIGVGRLLACLAEEHRDERGLRLPVTIAPYQVHLTLLDDLASAAGELARRVYDELWAAG 506

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V +DD  E+ G +FA AD++G PL+V +G + V++   E++ R TG+   +  +EV+ 
Sbjct: 507 VEVLFDDRDERAGVKFADADVIGLPLRVTIGRRSVANGAAEVRDRATGVTAQVPFDEVVA 566

Query: 437 YASHRFSNNR 446
               R +  R
Sbjct: 567 ELVRRIAALR 576


>gi|312277616|gb|ADQ62273.1| Prolyl-tRNA synthetase [Streptococcus thermophilus ND03]
          Length = 615

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 99/237 (41%), Positives = 144/237 (60%), Gaps = 2/237 (0%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
             +P L+E P DA++ SH LM+R G + Q S GIY+++PL  +A++    I+REE  + G
Sbjct: 1   MLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYMPLANRAIEKFKTIMREEFEKIG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A+EM  P L +ADLW ESGRY++YG+++ +L +R++   I GPTHEE  T + R  +KSY
Sbjct: 61  AVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDNSDFILGPTHEETFTVLVRDAVKSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + LP   YQIQ K+RDE RPR G++R+REF+MKDAYSF    E    +Y     +Y  IF
Sbjct: 121 KQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDAYSFHQNYEDLDVTYEDYRKAYEAIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            R GL+   +  + G +GG  S EF+ +    E         +D  I S +   +D+
Sbjct: 181 TRAGLEFKAIIGDGGAMGGKDSQEFMAVTP--ERTDLNRWVVLDKSIASLDDIPEDV 235



 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 16/200 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+ + V    RGIE+GHIF  GT+YS  M A     +G+   +
Sbjct: 409 FKAEYVDIRKVKEGEISPDGQGVLQFARGIEIGHIFKLGTRYSESMGANVLDENGRAVPI 468

Query: 313 QMGSYGIGAMRVVAAVIESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P  +AP+ + LI +   D+
Sbjct: 469 IMGCYGIGVSRILSAVIEQHARLFVNKTPKGQYRYAWGINFPKELAPYDVHLITVNTKDE 528

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +++ A L+  G DV  DD  E++GS+F+ +DL+G P++V VG K  S+  VE+K
Sbjct: 529 EANALTDRLEAALAAEGYDVLIDDRNERVGSKFSDSDLIGLPIRVTVGKK-ASEGVVEVK 587

Query: 420 HRLTGIREDMSLEEVINYAS 439
            + TG   +++ + +I   +
Sbjct: 588 IKATGDTIEVNADNLIETLA 607


>gi|34763882|ref|ZP_00144786.1| Prolyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27886345|gb|EAA23616.1| Prolyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 175

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 83/160 (51%), Positives = 113/160 (70%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK ++  L+E P++AEIASHKLMLR GMI + + GIY++LPLG + +  +  I+REE
Sbjct: 5   MRFSKAYIKTLKETPKEAEIASHKLMLRAGMIKKLASGIYAYLPLGYRTIKKIENIVREE 64

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R GA+E+ +P +Q A+LW ESGR+D  G EMLRL DR+++  +  PT EE++T I RS
Sbjct: 65  MDRAGALELLMPVVQPAELWQESGRWDVMGPEMLRLKDRHERDFVLSPTQEEMITAIVRS 124

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            I SY++LP   Y IQ KFRDE RPRFG+MR R    +  
Sbjct: 125 DISSYKSLPINLYHIQTKFRDERRPRFGLMRGRGIYYERC 164


>gi|328351896|emb|CCA38295.1| threonyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 454

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 73/433 (16%), Positives = 144/433 (33%), Gaps = 45/433 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI  +S G   +LP G +  + +   ++ +Q + G  E+  P +    LW  SG +D+Y 
Sbjct: 50  MIDSNSPGSVFFLPHGTRLFNKLVQFMKIQQKKHGFDEVITPLIYKKKLWEISGHWDNYK 109

Query: 91  KEMLRLA--------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           ++M R+          ++++     P +      I++   +S   LP  +       R+E
Sbjct: 110 EDMYRVEGNEVSHGDAKDEETFGLKPMNCPGHCLIYKRFDRSINELPIRYSDWSSLHRNE 169

Query: 143 LRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                 G+ R R F   D + F    + S     K       ++   GL    +   + P
Sbjct: 170 ASGALTGLTRVRRFHQDDGHIFCTQEQISAE-IMKTLHLIKLVYGVFGLSDYTLMLSTRP 228

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                + E    A+T        K  +D   PS            SI E   A Y    D
Sbjct: 229 DNYVGTLEEWNSAETQL------KSVLDQVAPS----------SWSIREGDGAFYGPKID 272

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-- 319
           + +    D+     ++    ++    F    ++       ++  +G      M    +  
Sbjct: 273 ILS---RDNYSREHQIGTIQLD----FQLPHRF----ELKYRPHEGDFKPPIMIHRAVFG 321

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE------KIYARLS 373
              R +A +I+              A       +        RD         +    L 
Sbjct: 322 SIERFMALLIDHYQGKWPFWMNPRQAVIIPINSSHVGKANEVRDLLSGRSNDYETLDDLV 381

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               D+  D   E +G +   A    +   ++VG K + ++ + ++ R +      ++EE
Sbjct: 382 NHQFDIDIDSRAETVGYRTRDALNKSYSYIILVGDKELENNVISLRSRDSRKVTTKTVEE 441

Query: 434 VINYASHRFSNNR 446
           V         + +
Sbjct: 442 VRELFQELVRSYQ 454


>gi|167957086|ref|ZP_02544160.1| threonyl-tRNA synthetase [candidate division TM7 single-cell
           isolate TM7c]
          Length = 603

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 141/449 (31%), Gaps = 49/449 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   I     RD       L L T        G+  + P G    + ++    + + + 
Sbjct: 192 EYLENIEIAKQRDHRKLGRDLDLYTT-SPLVGVGLPLFTPRGTILREVMSQYSNQLRQKF 250

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIK 123
           G  ++  P +   DL+ +SG +  +G+E+  +        M   P +    T IF S  +
Sbjct: 251 GFEKVWTPHITKKDLYEKSGHWAKFGEELFLVKSQETSDEMALKPMNCPHHTQIFASRPR 310

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR++P  + +    +RDE     G +     L +D       P+  +   N      L 
Sbjct: 311 SYRDMPVRYLETTTDYRDEKTGELGGLSRVRSLTQDDSHVFCRPDQIEEEINN-----LL 365

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
              R   +SI M+        D S  ++   D             D       +  + + 
Sbjct: 366 SAARELYESIDMKLRVRLSYRDDSDSYLGDID-----------LWDSAQGQLKSAVERVG 414

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E   A Y    D       D++    +V+   ++      FG          + 
Sbjct: 415 LDYFEQEGEAAFYGPKIDFM---ATDAIGREHQVATVQLDFVQPQRFG--------LEYV 463

Query: 304 GADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
             +G      M    +     R ++  IE +                         +   
Sbjct: 464 DINGNSTTPVMVHCALLGSIERFLSVFIEHTGGWFPFWAAPEQVRILTI-------NDSV 516

Query: 362 RDACEKIYARLSK---------VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
               +KI   LS+                D   E +G +   A  +  P+Q+IVG K + 
Sbjct: 517 LGYVDKITTILSETTLTKPVKYNDVRFTSDIRNESLGKKIREATSMKIPVQLIVGPKDME 576

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHR 441
             +V I+ +    +  + LE +  Y    
Sbjct: 577 AGEVSIRTQAGEEK--IPLENLSGYLKSL 603


>gi|28493150|ref|NP_787311.1| prolyl-tRNA synthetase [Tropheryma whipplei str. Twist]
 gi|81839144|sp|Q83GR4|SYP_TROWT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|28476190|gb|AAO44280.1| prolyl-tRNA synthetase [Tropheryma whipplei str. Twist]
          Length = 613

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 96/232 (41%), Positives = 134/232 (57%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           + S +     +E+P   E   +  +LR G I Q   GI+SW+PLG K    +  IIR E 
Sbjct: 4   KVSGFLFRTFREDPATTESRGYGFLLRAGYIRQTGSGIFSWMPLGLKVRHKIENIIRYEM 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            +  AIE+  P L SADL+ +SGR+  YG ++ RL DR     +  PTHEE  T + +  
Sbjct: 64  GQVNAIEVLFPALFSADLFKQSGRWSEYGDDIFRLKDRRQGDYLLAPTHEEAFTQMMKEI 123

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SYR+LP T YQIQ K+RDELRPR G++RSREF MKDAYSFDL  +G + SY     +Y
Sbjct: 124 CTSYRDLPRTVYQIQDKYRDELRPRAGLLRSREFSMKDAYSFDLDEKGLRQSYEAQKRAY 183

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
            +IF RL +  + ++A +G +GG +S EF+   + G+     + D   F   
Sbjct: 184 KKIFDRLKIDYVIVKANAGAMGGSVSEEFLHPTEMGDDTFVVTADGSAFNAE 235



 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 8/178 (4%)

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           T DV + K  D          RGIE+GH+F  G KYS  +       DG +  V MGSYG
Sbjct: 410 TLDVSSIKTGDKSEWGPVTVKRGIEIGHLFQLGLKYSNALGLKVLDKDGYNKAVFMGSYG 469

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+ A + E + D +G+ WP  +APF + ++ + +          ++   L+  G D
Sbjct: 470 IGVSRLFALIAEKNCDERGLKWPAVLAPFDLHVVLLSSARA-------ELIDSLTDCGLD 522

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           V  DD     G +F  A L+G P  +++G K   +  VE+  R    R  + L+E+I 
Sbjct: 523 VLVDDRRVSPGVKFTDAQLIGVPKIIVIGDKTRGED-VEVWDRANDQRTVLPLKEMIQ 579


>gi|297297312|ref|XP_001086926.2| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like
           [Macaca mulatta]
          Length = 708

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 68/447 (15%), Positives = 141/447 (31%), Gaps = 66/447 (14%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 317 KMMRNWEKFQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLMDFIREE 374

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y + M       D      P +      +F  
Sbjct: 375 YHKRDFTEVLSPNMYNSKLWEASGHWQHYSENMFTFEIEKDT-FALKPMNCPGHCLMFAH 433

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 434 RPRSWREMPMRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLQ 492

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E    A+                        
Sbjct: 493 FLQSVYSTFGFSFQLN-LSTRPENFLGEIEMWNEAEK----------------------- 528

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                                         ++    + +   ++    F    +++L   
Sbjct: 529 -----------------------XXXXXXXAIGRYHQCATIQLD----FQLPIRFNLTYV 561

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 562 SK--DGDDKKRPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP--- 613

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            C     ++ +   + G     D D    +  +   A L  +   ++VG K   ++ V +
Sbjct: 614 TCEKYALQVSSEFFEEGFMADVDLDHNCTLNKKIRNAQLAQYNFILVVGEKEKINNAVNV 673

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   I  ++ +   I    +   + 
Sbjct: 674 RTRDNKIHGEILVTSAIVKLKNLKKSR 700


>gi|254568978|ref|XP_002491599.1| Mitochondrial threonyl-tRNA synthetase [Pichia pastoris GS115]
 gi|238031396|emb|CAY69319.1| Mitochondrial threonyl-tRNA synthetase [Pichia pastoris GS115]
          Length = 461

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/433 (16%), Positives = 144/433 (33%), Gaps = 45/433 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI  +S G   +LP G +  + +   ++ +Q + G  E+  P +    LW  SG +D+Y 
Sbjct: 57  MIDSNSPGSVFFLPHGTRLFNKLVQFMKIQQKKHGFDEVITPLIYKKKLWEISGHWDNYK 116

Query: 91  KEMLRLA--------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           ++M R+          ++++     P +      I++   +S   LP  +       R+E
Sbjct: 117 EDMYRVEGNEVSHGDAKDEETFGLKPMNCPGHCLIYKRFDRSINELPIRYSDWSSLHRNE 176

Query: 143 LRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                 G+ R R F   D + F    + S     K       ++   GL    +   + P
Sbjct: 177 ASGALTGLTRVRRFHQDDGHIFCTQEQISAE-IMKTLHLIKLVYGVFGLSDYTLMLSTRP 235

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                + E    A+T        K  +D   PS            SI E   A Y    D
Sbjct: 236 DNYVGTLEEWNSAETQL------KSVLDQVAPS----------SWSIREGDGAFYGPKID 279

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-- 319
           + +    D+     ++    ++    F    ++       ++  +G      M    +  
Sbjct: 280 ILS---RDNYSREHQIGTIQLD----FQLPHRF----ELKYRPHEGDFKPPIMIHRAVFG 328

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE------KIYARLS 373
              R +A +I+              A       +        RD         +    L 
Sbjct: 329 SIERFMALLIDHYQGKWPFWMNPRQAVIIPINSSHVGKANEVRDLLSGRSNDYETLDDLV 388

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               D+  D   E +G +   A    +   ++VG K + ++ + ++ R +      ++EE
Sbjct: 389 NHQFDIDIDSRAETVGYRTRDALNKSYSYIILVGDKELENNVISLRSRDSRKVTTKTVEE 448

Query: 434 VINYASHRFSNNR 446
           V         + +
Sbjct: 449 VRELFQELVRSYQ 461


>gi|295100007|emb|CBK89096.1| prolyl-tRNA synthetase, family II [Eubacterium cylindroides T2-87]
          Length = 564

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 157/282 (55%), Gaps = 1/282 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK F   L+EN +D +  S  L++R GMI + S G+Y  +P+G+K L  +  I+REE
Sbjct: 1   MKLSKSFFYTLRENAKDEDSVSSNLLVRAGMIKKSSNGMYMIMPMGKKVLAKIENIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +   A E+ +P L   +++++SGR + +G  M  + DR  K  + GPTHEE+       
Sbjct: 61  MDAKDAQELLMPALIPEEVYIKSGRREVFGSNMFTMNDRYMKRYVLGPTHEELFAVAASM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY++ P+  YQIQ KFRDE RPR+G++R REF+MKDAY+FD+   G   +Y KM+ +
Sbjct: 121 DGKSYKDFPYNLYQIQTKFRDETRPRYGLIRVREFIMKDAYTFDIDEAGLDEAYAKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RIF R+ L+   ++A++G +GG LS E+  ++  GE  V   +   DF    E T+  
Sbjct: 181 YCRIFDRMELEYKIVKADTGAMGGLLSEEYQAISGIGEDIVVGCEGC-DFSSNLEITEVV 239

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           D +  +   E         +    E++     +  +   + +
Sbjct: 240 DTLQDSQEEELEIQLVETPNAKTIEEVAAFFGKEPKDFVKTL 281



 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 99/187 (52%), Gaps = 3/187 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+   K  D  P          GIEVG++F  GTKY+  M+  +  A+ +   V MGS
Sbjct: 378 VADLCQVKEGDICPVCGKPLTFQHGIEVGNLFKLGTKYAQSMNLYYTDANNQLQPVWMGS 437

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +AA++E  HD KGIIWP  VAPF +S++ I   D+   +    +Y   +K  
Sbjct: 438 YGIGLERCMAAIVEQHHDDKGIIWPKEVAPFILSIVPISLKDEKQMEIANDLYNYCTKNK 497

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V  DD  E+ G +F   +L+G P ++ VG K   +  +E  +R TG +E++S++ + +
Sbjct: 498 YSVLLDDRNERPGVKFKDMELIGIPYRITVGRK-AQEGILEFSNRYTGEKEEVSIDSIKS 556

Query: 437 YASHRFS 443
                + 
Sbjct: 557 MIDELYK 563


>gi|159109673|ref|XP_001705100.1| Threonyl-tRNA synthetase [Giardia lamblia ATCC 50803]
 gi|157433179|gb|EDO77426.1| Threonyl-tRNA synthetase [Giardia lamblia ATCC 50803]
          Length = 695

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 143/419 (34%), Gaps = 43/419 (10%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           + +L+E  R D    + ++ L   M H+++ G   ++  G +    + A IRE  +    
Sbjct: 270 IELLEEAKRRDHRNLAKEMDLF--MTHKYAPGAPMFMNNGTRIYRKLEAFIRELLHEFDY 327

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
            E+  PT  + DLW  SG    Y + M      ++ D      P +      ++++   S
Sbjct: 328 EEVMTPTFLNTDLWGISGHLQHYKENMFLLERKEKTDPQYGLKPMNCPCHCLLYKNQHHS 387

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
            + LP    +  +  R+EL     G+ R   F   DA+ F    +  +     +     R
Sbjct: 388 VQELPIRMAEFGVVHRNELSGALSGLTRVVRFEQDDAHIFCTVDQIEQEM-TGLIEFIKR 446

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G+                  +F +       +   S +  D    +      +  
Sbjct: 447 VYTPFGI------------------DFALSLSLRPEKKMGSDELWDRAEGTLRKVLTNTG 488

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y    DVH   L D+L    +     ++    F   +K    +  +  
Sbjct: 489 LDFKENPGDGAFYGPKIDVH---LTDALGRQHQCGTIQLD----FNLPSKDRFDLLYSVY 541

Query: 304 GAD----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                   ++H V +    +G++    A++  +  G+   W          ++ I  H +
Sbjct: 542 DEKTGSVKQEHPVMIHRAILGSVERFMAILIENTGGRFPFW-----ISPRQIVVIPLHGE 596

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                 + +  R    G  V  D   E++  + AVA    +   ++VG++        +
Sbjct: 597 DIVAYAKTVRERYHSKGYFVDLDISSEKMEKKIAVAWNKKYNFIMVVGAQE--KGTCSV 653


>gi|168334910|ref|ZP_02693030.1| prolyl-tRNA synthetase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 570

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 116/382 (30%), Positives = 177/382 (46%), Gaps = 17/382 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK      +E P++A+  SH  +LR G I Q + G+++ L   QK   N+  IIREE
Sbjct: 1   MLLSKLLGERFKEKPQEAKSISHIFLLRGGYIRQVANGLFTMLLPAQKVKVNIEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+    E+  P +   +LW ESGR++S G E+LR+ DR DK ++ G THEE    + RS
Sbjct: 61  MNKIDGQEVIFPVVLPGELWQESGRFESVGSELLRMKDRTDKDLVLGMTHEEAAVHLARS 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY   PF  YQIQ KFRDE R R G++R REF MKDAYSF  + E     Y+K   +
Sbjct: 121 EAKSYTQYPFMIYQIQTKFRDEARSRGGLIRVREFTMKDAYSFHTSNEDLDAYYDKCLKA 180

Query: 181 YLRIFHRLG-LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF--------- 230
           Y  I+ R G  + + + ++SG +GG++SHEF++LAD GE  +                  
Sbjct: 181 YNEIYRRTGVPEVVCVESDSGMMGGNVSHEFMLLADIGEDTIVVCDSCGYMSNMEVATGK 240

Query: 231 --PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK---RVSARGIEVG 285
              +  E    + I +         A Y   S+ H  K      ++K    V     ++ 
Sbjct: 241 LAAVMKEEKAIEKIHTPKMNTIADIAKYFGVSEEHTLKAAVYNVQDKSEPLVIFIRGDLQ 300

Query: 286 HIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                  K        ++   +    +  +G Y +   +V     +S  D   +I   + 
Sbjct: 301 VNIAKVQKIVKAAITPYEDYENCDLAFGFIGPYKMNTDKVTVIYDKSLKDETNLICGGNE 360

Query: 345 APFKISLINIKAHDQVCRDACE 366
           A +  S +N+   D    +  +
Sbjct: 361 ADYHYSGLNMN-RDLSAIEYVD 381



 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 103/192 (53%), Gaps = 3/192 (1%)

Query: 260 SDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            DV   K     P    K    RGIEVG+IF  GTKY+  M  T+   DGK     MG Y
Sbjct: 380 VDVAEVKEGQCCPNCNGKLTFKRGIEVGNIFKLGTKYTDVMKMTYVDQDGKSKTPIMGCY 439

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R++A+ IE+ HD  G IWP S+AP+++ +  +K+          +IY +LS+   
Sbjct: 440 GIGVGRLIASAIEAHHDDYGPIWPISIAPWQVHICALKSKTMDINAIGAEIYGKLSQE-F 498

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V +DD G   G QFA ADLLG P+++++G K + +  VEI  R   I++ ++ E+V   
Sbjct: 499 EVIFDDRGAAPGVQFADADLLGVPVRIVLGEKNLKNGNVEIVTRDKSIKKLIAKEDVYEE 558

Query: 438 ASHRFSNNRPVL 449
            +      +  L
Sbjct: 559 VAAIIRELQQRL 570


>gi|269860011|ref|XP_002649729.1| threonyl-tRNA synthetase [Enterocytozoon bieneusi H348]
 gi|263511674|sp|B7XIA1|SYTC_ENTBH RecName: Full=Probable threonyl-tRNA synthetase, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|220066924|gb|EED44394.1| threonyl-tRNA synthetase [Enterocytozoon bieneusi H348]
          Length = 634

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 150/446 (33%), Gaps = 48/446 (10%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + +    D      +L L     H++S G   WLP G    + +   +R+E  + G  E
Sbjct: 230 KVQKAKEMDHRKIGKELNLY--FFHEYSPGSCFWLPDGVVIYNRLMEFLRKEYIKRGFKE 287

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +   DLW ESG Y +Y + +      + +     P +      IF+S  +SY+ L
Sbjct: 288 VITPNIFHIDLWKESGHYQNYKENIY---GISGEDFALKPMNCPGHCIIFKSVERSYKEL 344

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  +    +  R+E      G+ R R F   DA+ F  +    K            ++  
Sbjct: 345 PLRYADFGVLHRNECSGSLTGLTRVRRFQQDDAHIF-TSKSSIKEEIENAIGFLKTVYSI 403

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
              K       + P     + E                   D    S      D     +
Sbjct: 404 FNFKYELF-LSTRPTKFLGTIE-----------------EWDVAEKSLKDAIIDSGHTYT 445

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           + E   A Y    D+    L D L    + +   ++    F    ++       FK   G
Sbjct: 446 LNEGDGAFYGPKIDII---LHDILNRKIQCATIQLD----FQLPQRFD----LKFKNELG 494

Query: 308 KDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                  +    +G+     A++    +  G   P  + P ++ L+ I    +      E
Sbjct: 495 MYETPVIIHRAILGSFERFIAILI---ESYGKHLPFWLHPRQVGLVTIDCKHENYMYTVE 551

Query: 367 KIYARLS---KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           K  + L+    +G    + D  + +  +   A L G  +  I+G K +  ++V +  R+ 
Sbjct: 552 K--SMLNVVLDLGIR-KYTDPKDTLNKKIRKATLDGCKIICILGDKEMEKNEVNV--RIG 606

Query: 424 GIREDMSLEEVINYASHRFSNNRPVL 449
                  +EE++          +  +
Sbjct: 607 NKTRTYKIEELLEKIKVSIETKKEFI 632


>gi|297844762|ref|XP_002890262.1| hypothetical protein ARALYDRAFT_889225 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336104|gb|EFH66521.1| hypothetical protein ARALYDRAFT_889225 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 620

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/446 (14%), Positives = 148/446 (33%), Gaps = 43/446 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +L  ++E    D  ++  +  L     H  S G   +LP G +  + +    ++E
Sbjct: 213 KQLKDYLKSIEEAKIYDHRLSGQQQELF--FSHPLSPGNCIYLPHGTRVYNKLMEFFKKE 270

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-LADRNDKAMIYGPTHEEVMTDIFR 119
             + G  E+  P + + D W  S   + Y K M +         +I+    + +      
Sbjct: 271 YWKMGYTEVITPVIYTMDFWETSRHAEYYQKNMFKLDFQTPGLTVIHNYGIKHMNCQGHC 330

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +    LP         +++E      G+ R R+F   DA+ F  +    K     + 
Sbjct: 331 LMFRHSVQLPIKLADFGPLYQNEASEDLSGLTRVRQFQQDDAHIFC-SETQVKEEVRGIL 389

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                 + + G     ++  + P                  +     +  D         
Sbjct: 390 DFVDYAYTKFGFTY-ELKLSTRP-----------------KKYLGDLEKWDKAEKDLEEA 431

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +D        +     Y    D+    ++D++    + +   ++    F+   ++ L  
Sbjct: 432 LNDFGKTWVKNKGDGEFYGPKIDI---TVYDAMKRKFQCATIQLD----FHLPDRFKLEY 484

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           SA        +  V +    +G++  + A++   + GK   W             + +  
Sbjct: 485 SAE--DETEIESSVLIHRAVLGSVERLFAILLEQYKGKLPFW------LSPRQAIVCSVS 536

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +  R    K+  ++ + G  V  D     +  +   A +  +   + VG +     +V +
Sbjct: 537 EDSRSYANKVRDQIHEAGYYVDVDTTDRTVSEKVQEAQVAQYNYILAVGDEEARTGQVTV 596

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
             R     E MS E +++    + +N
Sbjct: 597 WLRD----EMMSFETLLDEFKLKTAN 618


>gi|308160139|gb|EFO62643.1| Threonyl-tRNA synthetase [Giardia lamblia P15]
          Length = 695

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/456 (16%), Positives = 154/456 (33%), Gaps = 51/456 (11%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           + +L+E  R D    + ++ L   M H+++ G   ++  G +    + A IRE  +    
Sbjct: 270 IELLEEAKRRDHRNLAKEMDLF--MTHKYAPGAPMFMNNGTRIYRKLEAFIRELLHEFDY 327

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
            E+  PT  + DLW  SG    Y + M      ++ D      P +      ++++   S
Sbjct: 328 EEVMTPTFLNTDLWGISGHLQHYKENMFLLERKEKTDPQYGLKPMNCPCHCLLYKNQHHS 387

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
            + LP    +  +  R+EL     G+ R   F   DA+ F    +  +     +     R
Sbjct: 388 VQELPIRMAEFGVVHRNELSGALSGLTRVVRFEQDDAHIFCTVDQIEQEM-TGLIEFIKR 446

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G+                  +F +       +   S +  D    +      +  
Sbjct: 447 VYTPFGI------------------DFALSLSLRPEKKMGSDELWDRAEGTLRKVLTNTG 488

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A Y    DVH   L D+L    +     ++    F   +K    +  +  
Sbjct: 489 LDFKENPGDGAFYGPKIDVH---LTDALGRQHQCGTIQLD----FNLPSKDRFDLLYSVY 541

Query: 304 GAD----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                   ++H V +    +G++    A++  +  G+   W          ++ I  H  
Sbjct: 542 DEKTGSVKQEHPVMIHRAILGSVERFMAILIENTGGRFPFW-----ISPRQIMVIPLHGG 596

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 + +  R    G  V  D   E++  + AVA    +   ++VG++      V + 
Sbjct: 597 DIIAYAKTVRERYHSKGYFVDLDVSSEKMEKKIAVAWNKKYNFIMVVGAQEKGTCSVALS 656

Query: 420 HR----------LTGIREDMSLEEVINYASHRFSNN 445
            R              R+ ++LEE     +   ++ 
Sbjct: 657 GRTLSAYIGEKDNQRARKVLTLEETDTLLTELLNSR 692


>gi|83645563|ref|YP_433998.1| threonyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
 gi|83633606|gb|ABC29573.1| Threonyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
          Length = 415

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/431 (15%), Positives = 139/431 (32%), Gaps = 40/431 (9%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           ++    + +L L          G+  W P G +    V   IR         E++ P   
Sbjct: 2   KNHRDIAEELDLF--HSEAQGPGMAFWHPRGWRMFRTVKNHIRAAYEAESFQEVATPQFL 59

Query: 76  SADLWVESGRYDSYGKEMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             +LW  SG ++ Y  +M   A    +      P        +++  ++SY++LP   ++
Sbjct: 60  KRELWETSGHWEKYADDMFVGAGFGEEPEYALKPMSCPAHILLYKRGVRSYKSLPLRLFE 119

Query: 135 IQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
             L  R+E      G+MR R+F   DA+ F    +              R++   G    
Sbjct: 120 FGLVHRNERSGALNGLMRLRQFTQDDAHVFCR-WDQVSQEIQAFLRRAERVYADYGYGRP 178

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +   + P                +   F + +  +              +     E   
Sbjct: 179 QVFISTRP----------------QRDYFGAPEDWERAELMLAEACAAASAEFVRQEGEG 222

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV- 312
           A Y    ++       +L + +    R  ++G I              +  A G+     
Sbjct: 223 AFYGPKIEL-------ALKDGQG---RQWQMGTI-QLDFNMPERFDLHYIDAAGERRRPV 271

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +     G++     V+  ++      W           + + +  Q     CE +   L
Sbjct: 272 ILHQAVYGSIERWIGVLLETYQAALPAW------VHPQPVVLASVGQDAVAYCESVGELL 325

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            + G  V  D   + +  +  V      PL +I G++ +++  + ++ R  G +   S +
Sbjct: 326 RRHGVPVEMDLANDSLAKKMKVLRRYKTPLVLIAGAQEMANDSIVVRRRG-GEQALASRD 384

Query: 433 EVINYASHRFS 443
           E++       S
Sbjct: 385 ELVAIVREALS 395


>gi|224084293|ref|XP_002191292.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 447

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/438 (15%), Positives = 120/438 (27%), Gaps = 74/438 (16%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD         L     H+ S G   +LP G    + +   IR E    G  E+  
Sbjct: 76  EAAQRDHRRIGKDQELF--FFHKFSPGSCFFLPRGAHVYNTLVEFIRSEYRARGFSEVVT 133

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P L S  LW  SG +  Y   +  +    +  +   P +      +F    +S+R LP  
Sbjct: 134 PNLFSPRLWELSGHWQHYSPHIFSVPAAPE-PLSLKPMNCPAHCLMFAHRPRSWRELPLR 192

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                +  R+E      G+ R R F   DA+ F    + S    +        ++  LG 
Sbjct: 193 LADFGVLHRNEPPGTLTGLTRVRRFQQDDAHIFCTLEQVSSE-IDSSLDFIRTVYAVLGF 251

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                 A                  T         +  D           +      +  
Sbjct: 252 SFRLALA------------------TRPDGFLGDPETWDRAEQQLERSLQNFGQPWELSP 293

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+    + D+L  + +     ++    F    ++ L              
Sbjct: 294 GDGAFYGPKIDIR---IRDALGRHHQCGTIQLD----FQMPERFELEY------------ 334

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                                    + +      A                 D   ++ A
Sbjct: 335 ------------------------ARPLWLSPLQAMVIPQTP-------EVEDYAREVQA 363

Query: 371 RLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            L + G     D D G  +  +   A L  +  Q++VG +      V ++ R      ++
Sbjct: 364 VLRRGGLLADLDGDPGTTLARKIRRAQLTHYNFQLVVGRREREHGTVSVRTRENRQLGEL 423

Query: 430 SLEEVINYASHRFSNNRP 447
            L  V+        +  P
Sbjct: 424 ELPRVLRRLQELRDSRVP 441


>gi|294055076|ref|YP_003548734.1| threonyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
 gi|293614409|gb|ADE54564.1| threonyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
          Length = 612

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 71/469 (15%), Positives = 135/469 (28%), Gaps = 65/469 (13%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +L  L++   RD      +L L    I      G+  W P G      +   I +E  ++
Sbjct: 171 YLDKLEQAKARDHRKLGKELKLF--HIDDSVGSGLVLWSPNGAVVRTELQNFIADELQKS 228

Query: 65  GAIEMSVPTLQSADLWVESGRYDSY-----------------------GKEMLRLADRND 101
           G  ++  P +    L+  SG +  Y                         ++    D  +
Sbjct: 229 GYDQVFTPHIGKLGLYRTSGHFPYYKESQFPPIVEPGTVEELAHEGCSCADLSNKLDSGE 288

Query: 102 KA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKD 159
               +  P +  +   IF S   SYR+LP    +    +R E      G+ R R F   D
Sbjct: 289 IDGYLLKPMNCPMHIKIFDSQPHSYRDLPVRLAEFGTVYRWEQSGELNGMTRVRGFTQDD 348

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           A+ F  T +               +F+ LG+    +R              I L D   +
Sbjct: 349 AHLFC-TEDQIAEEIAGCLDLVKLVFNTLGMTEYRVR--------------IGLRDPDAS 393

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           +        D    +  +    +    +      A Y    D     + D +    ++  
Sbjct: 394 KYVGDPAKWDAAEDALRSAAQTLGVDYTEEPGEAAFYGPKIDF---VVKDVIGREWQLGT 450

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKG 337
             ++                  + GAD + H   M          R    +IE       
Sbjct: 451 VQVDYNLP--------ERFDLNYIGADNEKHRPVMLHRAPFGSMERFCGVLIEHFAGNFP 502

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                               +        +I          V  D + +++G++     +
Sbjct: 503 TWLAPEQVRILPM-------NDDLVPQAREIEKLFKAAKIRVTVDAIADKLGAKIRKCHV 555

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS-LEEVINYASHRFSNN 445
              P  +++G K   D  +++  R     E +    E ++      +N 
Sbjct: 556 DKVPHFLVLGRKEAEDGLIKVNSRANKALEGLKTPSEFLSELLENIANK 604


>gi|156978155|ref|YP_001449061.1| threonyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116]
 gi|156529749|gb|ABU74834.1| hypothetical protein VIBHAR_06960 [Vibrio harveyi ATCC BAA-1116]
          Length = 394

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 66/428 (15%), Positives = 145/428 (33%), Gaps = 40/428 (9%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
               + +L L        + G+  W P G +  +++ + +R   +R+G  E++ P     
Sbjct: 4   HREIAEQLDLF--HSEPQAPGMIFWHPNGWRLFESIKSHMRSVYHRSGFQEVNTPVFMKQ 61

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           +LW +SG  D + + M    ++  ++  +  P        +++  + S+++LP   ++  
Sbjct: 62  ELWQKSGHIDMFSENMFFGGNQEQQSGYVLKPMSCPAHILLYKRGVHSHKDLPIKLFEFG 121

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           L  R+E      G +R+R+F   DA+ F    E ++    +      +++   G + I +
Sbjct: 122 LVHRNESSGSLNGCLRARQFTQDDAHVFCQ-WEQAEDEVRQFLQRARKVYAAYGYEHIEV 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           +  + P       E  + A      +  +     F    +              +   A 
Sbjct: 181 KVSTKPEKALGDDEDWIRAQ---DILVSACIHEKFHTELQ--------------DGEGAF 223

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQM 314
           Y    ++    L DS+  + +      +           +      F   +G     V M
Sbjct: 224 YGPKIEL---SLTDSMGRSWQCGTIQFDFNL--------AKRFDVKFTSEEGTFEAPVIM 272

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++     ++     G   +W         S+ +   H        + +  RL  
Sbjct: 273 HQAMYGSVERWIGILLEMSQGDLPLWLHPQPVAIASVNHSNCH------FAKIVADRLLD 326

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +      D     +G +         P  + +G   V +  V IK+R       +S+E +
Sbjct: 327 IDIHALLDLSKSSMGRKMKRFHKKKIPFVISIGDYEVENDVVSIKNRKEASETQVSMEHL 386

Query: 435 INYASHRF 442
             Y     
Sbjct: 387 AEYILSSL 394


>gi|291543417|emb|CBL16526.1| prolyl-tRNA synthetase [Ruminococcus sp. 18P13]
          Length = 485

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/419 (18%), Positives = 150/419 (35%), Gaps = 70/419 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P      +N+  I+      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMVIRPYAYAIWENIQHILDGMFKATGHENVCMPMFIPESLLQKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                ++ +  +   PT E +  + + + + SYR+LP  + Q     R E   R  + RS
Sbjct: 99  TMGGSEKLEDRLCVRPTSETLFCEHYANIVHSYRDLPKLYNQWVSVVRWEKTTRPFL-RS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T + +     +M   Y                               
Sbjct: 158 REFLWQEGHTIHATAQEAIEETERMLNVY------------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E  +          I    T+ D             A YA  + +H+        
Sbjct: 187 -ADFCEHSLAMP------VIKGRKTESDKFA-------GAVATYAIEALMHD-------- 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G   YFG  ++      +   + K       S+G+   R++ A+I + 
Sbjct: 225 ------GKALQAGTSHYFGDGFAKAFDIEYTDKENKRVNPHQTSWGV-TTRLIGAIIMTH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P +VAP +  ++ I  H +   +   ++   L   G  V  DD     G +F
Sbjct: 278 GDNSGLVLPPAVAPIQAVIVPIAQHKEGVLEKANQLAEALKAQGIRVKLDDSDNSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE----VINYASHRFSNNRP 447
           A  ++ G P+++ +G K +  S+  +  R  G ++ ++L+E    ++           P
Sbjct: 338 AEYEMKGVPVRIEIGPKDIEQSQCIVATRYNGEKQPVALDEAYGTLVQTVQQLLDKTIP 396


>gi|302552824|ref|ZP_07305166.1| threonyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302470442|gb|EFL33535.1| threonyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 416

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 140/434 (32%), Gaps = 43/434 (9%)

Query: 17  DAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           D      +L L      M      G+  WLP G      +   +RE + R G   +  P 
Sbjct: 13  DHRRLGRELDLFDTDPLM----GAGLPYWLPDGAIVRHTLEEYVREAERRAGYRHVYSPV 68

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L   +L+  SG +D Y ++M    +   + ++  P+       I+RS   SYR LP    
Sbjct: 69  LGKRELYEISGHWDHYSEDMFPPMELGAEQVLLRPSLCPHHALIYRSRSHSYRELPLRMA 128

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           ++   +R EL    G +     +  +      T E +            R +  LG++  
Sbjct: 129 ELGGMYRSELSGVLGGLTRVRAITLNDAHIFCTLEQAVEEARSALELIGRAYADLGIRPA 188

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
             R      GG                     +             D         E   
Sbjct: 189 RYRLSLPGEGGK---------------YVADPELWRRATALLREVLDGSGIRYEAAEGEA 233

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV- 312
           A Y    DV   ++ D       +S   I+                  + G DG  H   
Sbjct: 234 AFYGPKIDV---QITDPAGREATLSTVQIDFHQP--------ERFDLHYIGPDGAKHRPV 282

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    IG++    A +    +  G  +P  +AP +++++ +        +   ++  R 
Sbjct: 283 MVHRSIIGSVERAVAHLV---ESHGGAFPPWLAPVQLAILPVA---DEQAEHAHELARRA 336

Query: 373 SKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             +G      D  E  + ++   A L   P Q ++G++  +   V ++ R     E +  
Sbjct: 337 RDLGLRAEVADPAEGTLAARIRAARL--VPYQAVIGAREAAAGLVAVRLRDGHRPEPLPA 394

Query: 432 EEVINYASHRFSNN 445
            E++     R +  
Sbjct: 395 AELLRRVGDRVAAR 408


>gi|316976611|gb|EFV59868.1| threonyl-tRNA synthetase, cytoplasmic [Trichinella spiralis]
          Length = 1190

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 66/435 (15%), Positives = 143/435 (32%), Gaps = 62/435 (14%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K +  + +E   RD      +  L   + H+ S G   + P G    + +   +R++
Sbjct: 279 KQLKLWEKMREEAASRDHRKLGRQQELF--IFHELSPGSAFFFPRGAYIYNTLVEFLRKQ 336

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW  SG +  Y K M ++    +      P +      I   
Sbjct: 337 YRKRGFREVITPNIYNSRLWETSGHWQHYAKNMFKIEIEKEL-FGLKPMNCPGHCLINEL 395

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
                                      G+ R R F   DA+ F    + +          
Sbjct: 396 ----------------------SGALSGLTRVRRFQQDDAHIFCRQDQIASE-IEGCLDF 432

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              ++  LG   + +   + P       +F+                 D          +
Sbjct: 433 LRFVYETLGFS-MKLYLSTRP------DDFM-----------GDVKTWDEAEAQLQCALE 474

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 ++     A Y    D+    + D++    + +   ++    F    ++ L    
Sbjct: 475 KFKLPWTLNAGDGAFYGPKIDII---VLDAMQRQHQCATIQLD----FQLPVRFDLHY-- 525

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                  K   V +    +G++  + AV+    +     WP  ++P +  +I +      
Sbjct: 526 -VDENHVKQRPVIIHRAVLGSIERMIAVLT---ENFAGKWPFWLSPRQAMVIPV---HPE 578

Query: 361 CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             D   ++  ++   G +   D D  + +  +   A L  +   ++VG+K   +S V I+
Sbjct: 579 FDDYALQVQQKIFDAGFECDVDVDASDTMKKKIRNAQLGKWNFILVVGAKEKENSSVNIR 638

Query: 420 HRLTGIREDMSLEEV 434
            R   +  + SLE +
Sbjct: 639 TRDNAVLGEYSLENI 653


>gi|14521178|ref|NP_126653.1| prolyl-tRNA synthetase [Pyrococcus abyssi GE5]
 gi|74581662|sp|Q9V022|SYP_PYRAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|5458396|emb|CAB49884.1| proS prolyl-tRNA synthetase [Pyrococcus abyssi GE5]
          Length = 480

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 170/449 (37%), Gaps = 80/449 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  +++E    A I   +  ++         G+  WLP G K + N+   I EE  
Sbjct: 11  FSEWFNEVIEE----AGILDKRYPVK---------GMNVWLPYGLKIMKNIEKFIHEEME 57

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
           RTG  E+  P L    +   E+     +  E+  +     +  D  +I  PT E  M  +
Sbjct: 58  RTGHQEVLFPALIPETEFKKEAEHIAGFEGEVFWITHAGHEPLDVKLILRPTSETAMYSM 117

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I+S+ +LPF  YQI   +R E +    ++R RE                       
Sbjct: 118 FALWIRSHADLPFKVYQIVNVYRYETKHTRPLIRVREISRF------------------- 158

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                           F       + +    +   D  I     
Sbjct: 159 --------------------------------FEAHTAHADFEDAERQIKEDLEIFDNLM 186

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               I  + S   +W     A   +  E +    P+      R +++G +  +   ++  
Sbjct: 187 KRLAIAYIISKRPEWDKFPGAFYSLGAEVVM---PDG-----RTLQIGTMHNYKQNFAKA 238

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +  ++  DG   YV   ++G+ + R++AAVI    D +G++ P ++AP ++ ++ I   
Sbjct: 239 YNILYEKEDGTHDYVHQTTFGM-SERLLAAVIAIHGDDRGMVLPPTIAPIQVVIVPIPKK 297

Query: 358 D--QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           +  ++  +   +I   L   G  V  D   ++ G +F   +L G P+++ VG + V +S 
Sbjct: 298 EKQEIVYEYAREIEEELRTAGIRVHLDMREKRPGWKFYDWELKGVPVRIEVGPRDVENST 357

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           V +  R    +  +  EE+++     F +
Sbjct: 358 VVLARRDKLEKITIKREELVDKVRELFDD 386


>gi|47226601|emb|CAG08617.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 677

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 135/414 (32%), Gaps = 47/414 (11%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD      +  L     H  S G   +LP G    + +   IR E
Sbjct: 297 KMLKEWEKFQEEAKNRDHRKLGREQELF--FFHDLSPGSCFFLPKGAFIYNTLIEFIRSE 354

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+  P + ++ LW  SG +  Y + M       +      P +      +F  
Sbjct: 355 YRRRGFQEVVSPNIYNSKLWQTSGHWQHYSENMFSFESEKET-FALKPMNCPGHCLMFDH 413

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 414 RPRSWRELPLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCSMDQIEGE-IKGCLD 472

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +++  G                    F +   T   +     D  D          
Sbjct: 473 FLRTVYNVFGFT------------------FKLNLSTRPEKFLGDPDVWDQAEKQLENSL 514

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 515 NEFGEKWVLNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 563

Query: 300 ATFKGADGK--DHYVQMGSYGIGAMRVVAAVIE------SSHDGKGIIWPDSVAPFKISL 351
            TF G DG   +  V +    +G++  + A++            +G   P  ++P ++ +
Sbjct: 564 LTFVGHDGDDKNRPVIIHRAILGSVERMIAILTENFGGKWWAVSEGTRRPLWLSPTQVMI 623

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
           + +      C +  +K+       G     D D G  +  +   A L  +   +
Sbjct: 624 VPVGP---TCEEYAQKVRQDFHSSGFMTDVDLDPGCTLNKKIRNAQLAQYNFIL 674


>gi|115532348|ref|NP_001040689.1| Prolyl tRNA Synthetase family member (prs-2) [Caenorhabditis
           elegans]
 gi|3880329|emb|CAB04884.1| C. elegans protein T27F6.5a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 454

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 117/437 (26%), Positives = 192/437 (43%), Gaps = 48/437 (10%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           H +++  G I   +KG YS LPLGQ+ +D +  I+  E   +GA+++++P + +  LW +
Sbjct: 23  HTMLVENGFILPTAKGFYSLLPLGQRVIDKLCRILDVEFQNSGALKIAMPIVGTQQLWEK 82

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRD 141
           +GR+++ G EM+R  DR    M   PT EE+ T  I           P   YQI  KFRD
Sbjct: 83  TGRWEAMGPEMIRFHDRQQNHMCLQPTAEEMCTELIATLSPLKKSQFPLIVYQIGEKFRD 142

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS---IPMRAE 198
           E+ PRFG+MR R+FLMKD YSF    E S+ +Y ++   Y RIF  +       I + A+
Sbjct: 143 EMNPRFGLMRGRQFLMKDMYSFSTDAETSQQTYAQIRQIYDRIFGEILQLDEDVIKVEAD 202

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           SG  GG +SHE+ + +   E  V   ++  +                     ++  P  A
Sbjct: 203 SGVHGGHISHEYHLKSSLEEDFVNFCENCKNHN-------------------KFEGPGPA 243

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
             +   E    ++ +        +E+ H F+ GTKYS  + A F+G            +G
Sbjct: 244 KCEKCAENSSKTVQKIP-----SVEIAHTFHLGTKYSEALGAKFQGKPLDMC-----CFG 293

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH--DQVCRDACEKIYARLSKVG 376
           IG  R++ A I+        +          ++I +K      V  +      +R  K G
Sbjct: 294 IGVTRLLPAAIDLLSVSDKALRLPRAIAPFDAVIIVKKSLMSNVIVEMASSSASRYLKGG 353

Query: 377 CDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG---SKFVSDSK--VEI-----KHRLTGI 425
                DD  E   G +   A+ LG P  +++     + ++  K  +E+     K      
Sbjct: 354 I--LLDDRVEMSAGKRIHDANRLGIPFILVIANETERSLATQKPVIEVFTTHAKSAEPMS 411

Query: 426 REDMSLEEVINYASHRF 442
           +  MSL+  + +     
Sbjct: 412 QGSMSLDRFVTFVQSTL 428


>gi|227872012|ref|ZP_03990397.1| threonine--tRNA ligase [Oribacterium sinus F0268]
 gi|227842155|gb|EEJ52400.1| threonine--tRNA ligase [Oribacterium sinus F0268]
          Length = 627

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 74/470 (15%), Positives = 144/470 (30%), Gaps = 80/470 (17%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD +    +L L   M  + + G+  WLP G K    + A  R  Q + G  E+
Sbjct: 178 LQEAQERDHKKLGSQLDLF--MFDETAPGMPYWLPRGWKMYQALLAYSRSVQAKHGYTEI 235

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDK--------------------------- 102
           S P + +  LW+ SG +  Y   M  +   +                             
Sbjct: 236 SAPLINNKKLWLISGHWAHYINNMFMVPGISGWLKADADLSGVLEHPTDASLGEKIVKIQ 295

Query: 103 ------------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GV 149
                        M   P +       ++   +SY+ LP  + +  +  R E   +  G+
Sbjct: 296 AGSVIYNRENIDTMAAKPMNCPNAMITYKRRNRSYKELPIRYSEYDVLHRKEKSGQMNGL 355

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R +EF   D ++F +     +     +      ++   G+        + P       E
Sbjct: 356 FRVQEFRQDDDHTFVM-ESQIEAEIADIISIADEVYKTFGVTY-RAELSTRPDDFMGDIE 413

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               A+    ++   K                      I E   A Y    D+   ++ D
Sbjct: 414 VWDRAEAALKKILTDKYGE---------------GGFEINEGDGAFYGPKIDL---QIKD 455

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAA 327
           +L    +     ++      FG         T++ A+G      +    I     R +  
Sbjct: 456 ALGREWQCGTIQLDFQLPHNFG--------LTYQTAEGSTAMPVVIHRAIYGSLERFIGI 507

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +IE+                           +   D  +KIY  LS +G     D   + 
Sbjct: 508 IIENFKGSFPFWLSPEQVGIVPIR-------EEHNDYGKKIYEALSDMGIRAEIDYSDKN 560

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE-DMSLEEVIN 436
           +  +         P  +++G K + +  V I  R +  +  ++ L+  + 
Sbjct: 561 MKEKIKTYKNYKNPYILVLGDKEMEEKAVSINMRGSNKQINNVPLDAFLK 610


>gi|28572657|ref|NP_789437.1| threonyl-tRNA synthetase [Tropheryma whipplei TW08/27]
 gi|73919841|sp|Q83HM3|SYT_TROW8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28410789|emb|CAD67175.1| threonyl-tRNA synthetase [Tropheryma whipplei TW08/27]
          Length = 640

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 59/440 (13%), Positives = 122/440 (27%), Gaps = 42/440 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      +L L + +  +   G+  +   G      +    R      G   +  P +  
Sbjct: 224 DHRKLGKELDLFS-LPDEIGPGLALFHVKGGIIRSEMEQYARLRHLEEGYNFVYSPHITK 282

Query: 77  ADLWVESGRYDSYGKEMLRLA------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            DL+  SG    YG+ M                    P +    + +F S  +SYR LP 
Sbjct: 283 RDLFERSGHLQWYGQSMFPPMRLDKDSCSQGFDYYLKPMNCPFHSLVFSSQPRSYRQLPL 342

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +    +R E      G+ R R     DA+ +           +K     + +    G
Sbjct: 343 RLAEFGTVYRYEQSGAIHGLARVRGLTQDDAHIYATRESFEDE-VSKALQFTISLLGDYG 401

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +    G                   S +   +          D        
Sbjct: 402 LDQFYIEISTRDASGKF---------------LGSDEDWAYATHILQKVAQDSGLQTRDD 446

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++      FG          +    G+ 
Sbjct: 447 PGGAAFYGPKI---SVQAKDAIGRYWQMSTIQLDFNLPERFG--------LFYTDRAGER 495

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +     G+     AV+   + G    W        + +              E+ 
Sbjct: 496 KRPIMVHRALFGSFERFFAVLTEHYAGAFPPWLSPEQVVALPVT------SAHIPYLEEF 549

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +R S        D M +++  +         P  ++ G + +++  V I+ R      D
Sbjct: 550 VSRFSSRLIRARVDYMQDRLPKKIRSYVKEKIPFVLVAGDRDLTNRTVAIRFRDGTQISD 609

Query: 429 MSLEEVINYASHRFSNNRPV 448
           + +++  +         + +
Sbjct: 610 LPIQKCFDGICASIDRKKQI 629


>gi|76563495|gb|ABA46079.1| prolyl-tRNA synthetase [Streptococcus agalactiae A909]
          Length = 612

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 92/207 (44%), Positives = 130/207 (62%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
             +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E  + G
Sbjct: 1   MLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKFKTIMRQEFEKIG 60

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           A+EM  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R  +KSY
Sbjct: 61  AVEMLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRDAVKSY 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           + LP   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +Y  IF
Sbjct: 121 KQLPLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKAYEAIF 180

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIV 212
            R GL    +  + G +GG  S EF+ 
Sbjct: 181 TRAGLDFKGIIGDGGAMGGKDSQEFMA 207



 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+ K     +RGIE+GHIF  GT+YS  M A     +G+ + +
Sbjct: 409 FTAEYVDIREVKEGEISPDGKGTLKFSRGIEIGHIFKLGTRYSDSMGANILDENGRSNPI 468

Query: 313 QMGSYGIGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P+ +APF + LI +   DQ
Sbjct: 469 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGAYRFAWGINFPEELAPFDVHLITVNVKDQ 528

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D  EKI A L   G +V  DD  E++GS+F+ +DL+G P++V VG K  S+  VE+K
Sbjct: 529 ESQDLTEKIEADLMLKGYEVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-ASEGIVEVK 587

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + +G   ++  + +I          +
Sbjct: 588 IKASGDTIEVHADNLIETL--EILTKK 612


>gi|28493229|ref|NP_787390.1| threonyl-tRNA synthetase [Tropheryma whipplei str. Twist]
 gi|73919842|sp|Q83GK5|SYT_TROWT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28476270|gb|AAO44359.1| threonyl-tRNA synthetase [Tropheryma whipplei str. Twist]
          Length = 640

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 59/440 (13%), Positives = 122/440 (27%), Gaps = 42/440 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      +L L + +  +   G+  +   G      +    R      G   +  P +  
Sbjct: 224 DHRKLGKELDLFS-LPDEIGPGLALFHVKGGIIRSEMEQYARLRHLEEGYNFVYSPHITK 282

Query: 77  ADLWVESGRYDSYGKEMLRLA------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            DL+  SG    YG+ M                    P +    + +F S  +SYR LP 
Sbjct: 283 RDLFERSGHLQWYGQSMFPPMRLDKDSCSQGFDYYLKPMNCPFHSLVFSSQPRSYRQLPL 342

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +    +R E      G+ R R     DA+ +           +K     + +    G
Sbjct: 343 RLAEFGTVYRYEQSGAIHGLARVRGLTQDDAHIYATRESFEDE-VSKALQFTISLLGDYG 401

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L    +   +    G                   S +   +          D        
Sbjct: 402 LDQFYIEISTRDASGKF---------------LGSDEDWAYATHILQKVAQDSGLQTRDD 446

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y       + +  D++    ++S   ++      FG          +    G+ 
Sbjct: 447 PGGAAFYGPKI---SVQAKDAIGRYWQMSTIQLDFNLPERFG--------LFYTDRAGER 495

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +     G+     AV+   + G    W        + +              E+ 
Sbjct: 496 KRPIMVHRALFGSFERFFAVLTEHYAGAFPPWLSPEQVVALPVT------SAHIPYLEEF 549

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +R S        D M +++  +         P  ++ G + +++  V I+ R      D
Sbjct: 550 VSRFSSRLIRARVDYMQDRLPKKIRSYVKEKIPFVLVAGDRDLTNRTVAIRFRDGTQISD 609

Query: 429 MSLEEVINYASHRFSNNRPV 448
           + +++  +         + +
Sbjct: 610 LPIQKCFDGICASIDRKKQI 629


>gi|327288851|ref|XP_003229138.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Anolis
           carolinensis]
          Length = 706

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 68/437 (15%), Positives = 140/437 (32%), Gaps = 65/437 (14%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   +LP G      +   I+ E  + G  E+ 
Sbjct: 321 EEAARRDHRRIGKEQELF--FFHELSPGSCFFLPKGAHIYTTLVDFIKSEYLKRGFSEVI 378

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + ++ LW  SG +  Y + M        +     P +      +F    +S+R LP 
Sbjct: 379 TPNIFNSKLWETSGHWQHYEENMFSFR-LEGETFALKPMNCPGHCLMFGHRPRSWRELPL 437

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+E      G+ R R F   DA+ F    +       +  + +L+  + + 
Sbjct: 438 RLADFGVLHRNEPSGALSGLTRVRRFQQDDAHIFCAMDQL--EGEIRSCLDFLQAVYSVF 495

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             ++     + P            A+                                  
Sbjct: 496 GFTLRFYLSTRPEKFLGEIHLWDQAE---------------------------------- 521

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
                       + + ++ D+L    + +   ++      F   Y+    AT       +
Sbjct: 522 ------------LVDIQIKDALGRFHQCATIQLDFQMPIRFDLSYTSKEGAT------PE 563

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++  + AV+    +  G  WP  ++P +I +I +    +       +I+
Sbjct: 564 RPVMIHRAVLGSVERMMAVLA---ENYGGKWPFWLSPSQIMVIPVGPDAES---YAHEIH 617

Query: 370 ARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
               + G     D D G  +  +   A L  +  Q +VG K +S+  + ++ R      +
Sbjct: 618 QTFHQAGFTTDVDLDPGTTLNRKIRNAQLAQYNFQFVVGRKEMSNRTLNVRSRDGHRHGE 677

Query: 429 MSLEEVINYASHRFSNN 445
                V++         
Sbjct: 678 RDFNAVLDRLKELRETR 694


>gi|325106885|ref|YP_004267953.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Planctomyces
           brasiliensis DSM 5305]
 gi|324967153|gb|ADY57931.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Planctomyces
           brasiliensis DSM 5305]
          Length = 729

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 79/505 (15%), Positives = 141/505 (27%), Gaps = 95/505 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
              Y   I +   RD  +   +L L     H   +G+  WLP G      +   I++E  
Sbjct: 235 LKNYLEQIEEAKRRDHRVLGKRLHLFQIDPH-VGQGLCLWLPKGATIRALLEDFIKKELL 293

Query: 63  RTGAIEMS---------------VPT------------------------LQSADLWVES 83
                 +                 P                         LQ  +L  ES
Sbjct: 294 ERQYEPVYSPHIGRVELYETSGHFPYYRDSQFAPIFGHDAGRIIDYCIRKLQDGELSGES 353

Query: 84  GR------------YDSYGKEM--------LRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            +             D Y K          LR  ++  +  +  P +      I++S  +
Sbjct: 354 EQTLLQAAEIMGYQADDYQKANSNEEKIAALRKWEKQQERYLLKPMNCPHHAQIYKSQPR 413

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR+LP    +    +R E       M     L +D       PE  +  + +       
Sbjct: 414 SYRDLPVRLAEFGTVYRHEQTGELNGMLRVRGLTQDDAHLFCMPEQVEEEFRQTLELVQF 473

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +   +GL    ++                  D G  +   S++       S     ++  
Sbjct: 474 VLKSVGLNDYRVQLSLR--------------DPGSDKYVGSEENWQQAEASLRKVLNESG 519

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +  E   A Y   +D     + D++    ++    ++                  + 
Sbjct: 520 LSFTACEGEAAFYGPKADFM---VRDAIGREWQLGTVQLDYNLP--------ERFELEYV 568

Query: 304 GADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           GAD K H   M          R V  +IE       +                       
Sbjct: 569 GADNKMHRPVMIHRAPFGSMERFVGMLIEHFAGAFPLWLAPEQIRVLPVT-------DKV 621

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D  + +  RL K G     D    ++ ++   A L   P  ++VG K    + V ++ R
Sbjct: 622 ADYAQDVVKRLKKEGFRTSADMRSCKVNAKIRDAQLELIPYMLVVGPKEAEQNAVSVRDR 681

Query: 422 -LTGIREDMSLEEVINYASHRFSNN 445
             +     M L++ I       +N 
Sbjct: 682 IESADIGMMPLDDAIAKFRDEVTNK 706


>gi|260771311|ref|ZP_05880237.1| prolyl-tRNA synthetase [Vibrio furnissii CIP 102972]
 gi|260613627|gb|EEX38820.1| prolyl-tRNA synthetase [Vibrio furnissii CIP 102972]
          Length = 541

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 67/196 (34%), Positives = 112/196 (57%), Gaps = 3/196 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                    +D+ N    D     +   +  RGIEVGHIF  GT YS  M+ +  G DGK
Sbjct: 346 GRDVALGKVADLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSEKMNCSVLGPDGK 405

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEK 367
           +  ++MG YGIG  RVVAA IE ++D  GIIWPD++APF+++++ +     +  + A EK
Sbjct: 406 NVILEMGCYGIGVSRVVAAAIEQNNDKYGIIWPDAIAPFQVAIVPMNMHKSERVQQAAEK 465

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +YA LS  G DV +DD  E+ G  F+  +L+G P  +++G + + +   E K+R  G + 
Sbjct: 466 LYAELSAAGIDVLFDDRKERPGVMFSDMELIGVPHTIVIGDRSMDEGNFEYKNRRNGEKT 525

Query: 428 DMSLEEVINYASHRFS 443
            +++++++ +   + +
Sbjct: 526 AIAIDQIVEHIKAQLA 541



 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 96/206 (46%), Positives = 132/206 (64%), Gaps = 1/206 (0%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           MI + + G+Y+WLP G + L  V  I+R+E +R GAIE  +P +Q  +LW E+GR +  G
Sbjct: 1   MIRKLASGLYTWLPTGLRVLRKVENIVRQEIDRAGAIETLMPVVQPFELWEETGRSEKMG 60

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            E+LR  DR+ +  +  PT EEV+T + R+ + SY+ LP   YQIQ KFRDE RPRFGVM
Sbjct: 61  PELLRFTDRHVRPFVLSPTAEEVITALVRNEVSSYKQLPLNLYQIQTKFRDERRPRFGVM 120

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R+REF M DAYSFDL  +G + SY+ M  +Y + F R+GL   P+ A+SG IGG+ S EF
Sbjct: 121 RAREFSMMDAYSFDLDKQGLQKSYDAMHAAYCKAFDRMGLDYRPVLADSGAIGGNGSQEF 180

Query: 211 IVLADTGETQVFCSKDFMDFPIPSEN 236
            VLA++GE  +       D+    E 
Sbjct: 181 HVLAESGEDLIVF-STESDYAANIEK 205


>gi|302545670|ref|ZP_07298012.1| threonine-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302463288|gb|EFL26381.1| threonine-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 403

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 142/419 (33%), Gaps = 37/419 (8%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      +L L  G       G+  WLP G    + +   IR E+ R G   +  P L  
Sbjct: 3   DHRKLGRELGLF-GTDPLIGAGLPYWLPDGAAVREALEEYIRAEERRAGYRHVYSPVLGK 61

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            +L+  SG +  Y  +M    D   + ++  P+       I+RS  +SYR LP    ++ 
Sbjct: 62  RELYEVSGHWAHYRDDMFPPMDVGGEEVVLRPSLCPHHAVIYRSRARSYRELPLRMAELG 121

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             +R EL    G +     +  +        E              R +  +G++++  R
Sbjct: 122 GMYRAELSGVLGGLTRVRAIQLNDAHIFCALEQVAGEVEGALGMIRRAYEAMGIRAVRYR 181

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                  G                     +  +  +         +     + +   A Y
Sbjct: 182 LSLPGDSGKF---------------VAGSEVWERSVGVLGEVLRRVGVPYEVGKGEAAFY 226

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
               DV   ++ D       +S   ++      FG +Y     A           V +  
Sbjct: 227 GPKIDV---QVADGAGREFTLSTVQVDFHQPERFGLQYVGADGAK-------HRPVMVHR 276

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             IG++    A +   H G    W   +AP ++ ++ +   +       E    R  + G
Sbjct: 277 SIIGSVERAVAQLVEVHGGAFPGW---LAPVQVVVLPVSEGEAGH---AEAFVERCVERG 330

Query: 377 CDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                D  + G  +G++   A L   P QV++G+K  ++ +V ++ R       M+ E+
Sbjct: 331 LRARVDGPERG-SLGARVRGARL--VPYQVVIGAKEAAEGQVALRLRGGRQVGVMAAEK 386


>gi|237842879|ref|XP_002370737.1| prolyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
 gi|211968401|gb|EEB03597.1| prolyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
 gi|221485712|gb|EEE23993.1| prolyl-tRNA synthetase, putative [Toxoplasma gondii GT1]
 gi|221502920|gb|EEE28630.1| prolyl-tRNA synthetase, putative [Toxoplasma gondii VEG]
          Length = 711

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 142/427 (33%), Gaps = 69/427 (16%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESG 84
           +R+ MI  +   G Y   P      + V     +E  + G      P   S   L  E  
Sbjct: 232 VRSEMIEYYDISGCYIMRPWAFHIWEKVQRFFDDEIKKMGVENSYFPMFVSRHKLEKEKD 291

Query: 85  RYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E+  +    D  +       PT E +M   +   I+S+R+LP    Q     R
Sbjct: 292 HVEGFSPEVAWVTHYGDSPLPEKIAIRPTSETIMYPAYAKWIRSHRDLPLKLNQWCSVVR 351

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E +     +R+REFL ++ ++   T E +      +   Y R +               
Sbjct: 352 WEFKQPTPFLRTREFLWQEGHTAHATEEEAWELVLDILELYRRWYE-------------- 397

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                                             E      I    S  E++      T 
Sbjct: 398 ----------------------------------ECLAVPVIKGEKSEGEKFAGGKKTT- 422

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 +   +PEN     RGI+       GT ++      F+  +G    V   S+G  
Sbjct: 423 -----TVEAFIPENG----RGIQAATSHLLGTNFAKMFEIEFEDEEGHKRLVHQTSWGC- 472

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSKVGC 377
             R +  +I +  D KG++ P  VA  ++ +I I   D+   +    C ++   L K   
Sbjct: 473 TTRSLGVMIMTHGDDKGLVIPPRVASVQVVIIPILFKDENTGEILGKCRELKTMLEKADI 532

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            V  DD      G ++   ++ G PL++ +G K ++     +  R TG    +S  ++  
Sbjct: 533 RVRIDDRSNYTPGWKYNHWEVKGVPLRLELGPKDLAKGTARVVRRDTGEAYQISWADLAP 592

Query: 437 YASHRFS 443
                  
Sbjct: 593 KLLELME 599


>gi|332159170|ref|YP_004424449.1| prolyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331034633|gb|AEC52445.1| prolyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 480

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 171/449 (38%), Gaps = 80/449 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  +++E    A I   +  ++         G+  WLP G K + N+   I EE  
Sbjct: 11  FSEWFNQVIEE----AGILDKRYPVK---------GMNVWLPYGLKIMRNIERFIHEEME 57

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
           RTG  E+  P L    +   E+     +  E+  +     +  D  +I  PT E  M  +
Sbjct: 58  RTGHQEVLFPALIPETEFKKEAEHIAGFEGEVFWVTHAGHEPLDVRLILRPTSETAMYSM 117

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I+S+ +LP   YQI   +R E +    ++R RE                       
Sbjct: 118 FALWIRSHADLPLKVYQIVNVYRYETKHTRPLIRVREISRFF------------------ 159

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                        +H   V  +  E Q+    +  D  +     
Sbjct: 160 ----------------------------EAHTAHVDFEDAERQIREDLEIFDNLMKKLAI 191

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +     + S   +W     A   +  E +    P+      R +++G +  +   ++  
Sbjct: 192 AY-----IISKRPEWDKFPGAYYSLGAEVVM---PDG-----RTLQIGTMHNYKQNFAKA 238

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +  ++  DG   YV   ++G+ + R++AAVI    D +GI+ P ++AP ++ ++ I   
Sbjct: 239 YNIMYEKEDGTHDYVHQTTFGM-SERLLAAVIAIHGDDRGIVLPPTIAPIQVVIVPIPKK 297

Query: 358 --DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             ++      ++I   L   G  V  D   ++ G +F   +L G P++V VG   V +S 
Sbjct: 298 GSEEEVYKYAKEIEEELKMAGIRVHLDLRDKRPGWKFYDWELKGVPVRVEVGPIDVQNST 357

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           V +  R    +  +  EE+++     F +
Sbjct: 358 VVLARRDKLEKITVKREELVDRVRELFDD 386


>gi|322502963|emb|CBZ38047.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 788

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 82/511 (16%), Positives = 164/511 (32%), Gaps = 92/511 (18%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD  +   +  L     H+ S G   WLP G +  + +   +R++  R G  E+ 
Sbjct: 282 EEAAKRDHRVIGRQQNLFN--FHEVSPGSAFWLPHGTRIYNTLVEFLRKKYRRCGFQEVI 339

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + S+ LW+ SG ++ Y   M        +     P +      +F S   SY+ LP 
Sbjct: 340 SPNMYSSKLWMVSGHWEKYADNMF-CTKCEKEDFGLKPMNCPGHCIMFASQPHSYKELPI 398

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHS---------------Y 174
            +    +  R+EL     G+ R R F   DA+ F    + +                  +
Sbjct: 399 RYADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRMDQITDEMEGQMQFLSDVYGVLGF 458

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESG-----------------PIGGDLSHEFIVLADTG 217
              F    R  ++LG  ++  ++ES                  P+  D    +    D+ 
Sbjct: 459 KFYFYHSTRPANKLGSDALWDQSESYLRTALNRFCGIPEELPDPLHPDQRFHYDGKPDSV 518

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           +      K       P+      +            A Y    D+    + D+L    + 
Sbjct: 519 KKMKALMKKAERCEDPNAWKGPTNGGDGWIENAGDGAFYGPKIDI---VVEDALRRRHQC 575

Query: 278 SARGIEVGHIFYFGTKY------------------------------------SLPMSAT 301
           +   ++      FG KY                                    S P   T
Sbjct: 576 ATIQLDFNLPSRFGLKYTLPAAEKDETTVSPTEKQKHADPALTASSPAVEDCVSKPKPGT 635

Query: 302 FKG-----------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           ++               +   V +    +G++    A++    +  G  WP  ++P ++ 
Sbjct: 636 YEAAVRDLGIDLELDANQARPVMIHRAILGSLERSIAIL---CEHFGGDWPFWLSPRQVM 692

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ + A +    +  +++   +   G     D+    +  +   A+   +   ++VG K 
Sbjct: 693 VVPVSASN---YEYSQQVRDTMHDAGFHADVDNGAATLDKKIRNAEKARYNFILVVGQKE 749

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              + V I+ R      + SL E + +    
Sbjct: 750 QDATAVNIRARGEKRLGNKSLVEAVQWLKEL 780


>gi|146100812|ref|XP_001468953.1| threonyl-tRNA synthetase [Leishmania infantum]
 gi|134073322|emb|CAM72048.1| putative threonyl-tRNA synthetase [Leishmania infantum JPCM5]
          Length = 788

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 82/511 (16%), Positives = 165/511 (32%), Gaps = 92/511 (18%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD  +   +  L     H+ S G   WLP G +  + +   +R++  R G  E+ 
Sbjct: 282 EEAAKRDHRVIGRQQNLFN--FHEVSPGSAFWLPHGARIYNTLVEFLRKKYRRCGFQEVI 339

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + S+ LW+ SG ++ Y   M        +     P +      +F S   SY+ LP 
Sbjct: 340 SPNMYSSKLWMVSGHWEKYADNMF-CTKCEKEDFGLKPMNCPGHCIMFASQPHSYKELPI 398

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHS---------------Y 174
            +    +  R+EL     G+ R R F   DA+ F    + +                  +
Sbjct: 399 RYADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRMDQITDEMEGQMQFLSDVYGVLGF 458

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESG-----------------PIGGDLSHEFIVLADTG 217
              F    R  ++LG +++  ++ES                  P+  D    +    D+ 
Sbjct: 459 KFYFYHSTRPANKLGSEALWDQSESYLRTALNRFCGIPEELPDPLHPDQRFHYDGKPDSV 518

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           +      K       P+      +            A Y    D+    + D+L    + 
Sbjct: 519 KKMKALMKKAERCEDPNAWKGPTNGGDGWIENAGDGAFYGPKIDI---VVEDALRRRHQC 575

Query: 278 SARGIEVGHIFYFGTKY------------------------------------SLPMSAT 301
           +   ++      FG KY                                    S P   T
Sbjct: 576 ATIQLDFNLPSRFGLKYTLPAAEKDETTVSPTEKQKHADPALTASSPAVEDCVSKPKPGT 635

Query: 302 FKG-----------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           ++               +   V +    +G++    A++    +  G  WP  ++P ++ 
Sbjct: 636 YEAAVRDLGIDLELDANQARPVMIHRAILGSLERSIAIL---CEHFGGDWPFWLSPRQVM 692

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ + A +    +  +++   +   G     D+    +  +   A+   +   ++VG K 
Sbjct: 693 VVPVSASN---YEYSQQVRDTMHDAGFHADVDNGAATLDKKIRNAEKARYNFILVVGQKE 749

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              + V I+ R      + SL E + +    
Sbjct: 750 QDATAVNIRARGEKRLGNKSLVEAVQWLKEL 780


>gi|316974411|gb|EFV57903.1| proline--tRNA ligase [Trichinella spiralis]
          Length = 413

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 126/430 (29%), Positives = 198/430 (46%), Gaps = 49/430 (11%)

Query: 21  ASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
            S +LML  G+I     KG++ +LP+G +AL+ +  IIR E +  GA  M++  L    +
Sbjct: 4   KSQRLMLDNGLIEYVGGKGLFHYLPVGLRALEKLCIIIRHEMDLLGAGRMALSNLCERSV 63

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLK 138
           W ++GR++    E+LRL DR  K     PTHEE +T  I R    +   LP   YQI LK
Sbjct: 64  WEQTGRWEEVSAELLRLKDRKGKEYCLCPTHEESVTSLISRFSPITSSRLPLLLYQITLK 123

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           +RDE  PRFG+ R+REF MKD YSFDL  + +  +Y+ +  +Y  IF  LG+K   + A 
Sbjct: 124 YRDEPNPRFGLARAREFFMKDMYSFDLDTKSAMKTYDAVNKAYFSIFQTLGIKVHRVEAA 183

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
            G IGG+LSHEF   +  GE  +   +                                 
Sbjct: 184 VGSIGGNLSHEFHCESQYGEDYILMCEKCQKK---------------------------F 216

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           T +V        +        R +E+ H F+ G KYS  + AT     G    +QMG +G
Sbjct: 217 TEEVLVNSTTCPVCNEPFQKVRSLELAHTFFLGEKYSQALGATVTCNPGSPIPLQMGCFG 276

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD--ACEKIYARLSK-V 375
           IG  R++AA+++     + I WP  +AP+K+ +I  K   +          +  +LS   
Sbjct: 277 IGISRLLAAIVDYFSSDEEIRWPLCIAPYKVCVIPPKNGSREYPATPMALHLAEQLSSLA 336

Query: 376 GC--DVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV--------EIKHRLTG 424
               ++ +DD     +G++   A   G+P  ++      ++  V        E+    T 
Sbjct: 337 NFNEEIVYDDRTHQTVGTRLRDAKRRGYPYVIV------ANKTVFNKSSPKFELHCTATD 390

Query: 425 IREDMSLEEV 434
              +++  E+
Sbjct: 391 EVLEVTHAEL 400


>gi|307328733|ref|ZP_07607905.1| threonyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306885682|gb|EFN16696.1| threonyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 412

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 77/435 (17%), Positives = 141/435 (32%), Gaps = 43/435 (9%)

Query: 16  RDAEIASHKLMLRTG--MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
            D      +L L     +I     G+  WLP G      +   IR+ + R G   +  P 
Sbjct: 2   SDHRKLGRELGLFDTDPLI---GAGLPYWLPDGATVRHTLEEYIRDAERRAGYRHVYSPV 58

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L   +L+  SG +  Y  +M    +   + ++  P+       I+RS   SYR LP    
Sbjct: 59  LGKRELYELSGHWSHYSDDMFPPMELGAEQVVLRPSLCPHHAVIYRSRGHSYRELPLRMA 118

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           ++   +R EL    G +     +  +      T +              R +  LG+   
Sbjct: 119 ELGGMYRSELSGVLGGLTRVRAIQLNDAHIFCTLDQVADEAGAALEMIRRAYEALGMTPA 178

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
             R      GG                   + +             D        VE   
Sbjct: 179 RYRLSLPGPGGK---------------YVAAPEMWRRSTALLTDVLDGSGLPYEAVEGEA 223

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV- 312
           A Y    DV   ++ D       +S   ++      F           + G DG  H   
Sbjct: 224 AFYGPKIDV---QVADGAGRESTLSTVQVDFHQPEQFD--------LHYIGPDGARHRPV 272

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    IG++    A      +  G  +P  +AP ++ ++ I    +      E +  R 
Sbjct: 273 MVHRSIIGSVERAVA---HLIEEHGGAFPAWLAPTQLVVLPI---SEAELPHAEALVRRC 326

Query: 373 SKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             +G        + G  +G++   A L   P Q +VG++   D +V ++ R     + + 
Sbjct: 327 VDLGLRAELAGPERG-SLGARIREARL--VPYQAVVGAREAGDDRVALRLRDGRRLDPLP 383

Query: 431 LEEVINYASHRFSNN 445
           + E ++  +     +
Sbjct: 384 VGEALSRINALVKAH 398


>gi|27904721|ref|NP_777847.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|46396631|sp|Q89AN7|SYP_BUCBP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|27904118|gb|AAO26952.1| prolyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 574

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 101/254 (39%), Positives = 153/254 (60%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  KY    L+E P +++  SH LMLR G+I Q++ G Y WLP G + L  V  II+ E
Sbjct: 1   MQARKYLFSTLKETPHNSDCISHALMLRAGIIRQNTSGTYIWLPTGLRILKKVIRIIKNE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + GA+E+++P LQ  +LW  S R  +YG+E+ ++ DR +K  I GPTHEE++T   ++
Sbjct: 61  MKQCGAMEIAMPFLQKKNLWDLSKRVITYGQELFQVTDRTNKKFILGPTHEEMITYFIKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SY+ LP   YQIQ KFRDE+RPRFG++R++EF+MKDAYSF +     + +YN M+ +
Sbjct: 121 ELQSYKQLPLILYQIQTKFRDEIRPRFGIIRTKEFMMKDAYSFHINMLSLEKTYNLMYQT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y++IF ++ LK   + A+SG +GG  SHEF   ++TGE  +  S            T   
Sbjct: 181 YIKIFKKMKLKFYAVEADSGLMGGLKSHEFQAPSNTGEDVIVLSTQSNYLANIQVATSIQ 240

Query: 241 DIISLNSIVEQWTA 254
           +     S    +  
Sbjct: 241 NNHIKYSTNNYFKK 254



 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 3/185 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           T D+      D  P+   +    + IE+ HIF  G KYS  M+   +   GK   + MG 
Sbjct: 386 TYDIRYVLEGDPSPDGAGELKMQKSIEIAHIFQLGKKYSKIMNVKIQNKIGKKDTLIMGC 445

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKV 375
           YGIG  R++AA+IE ++D  GIIWPDS+APF I++I +  H     +   EKIY    K 
Sbjct: 446 YGIGITRIIAAIIEQNNDKNGIIWPDSIAPFTIAIIPVCFHKSTLVKQQSEKIYNFCKKN 505

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D   DD  + +    +  +L+G P  +I+  K + +  VE + R   +++ ++   V 
Sbjct: 506 NIDALLDDRKQNLSITLSEIELIGIPYSIIISEKLLKNDMVEYRERHKNVKKIINKNHVF 565

Query: 436 NYASH 440
               +
Sbjct: 566 KIILN 570


>gi|56789234|gb|AAH88355.1| TARS protein [Homo sapiens]
          Length = 682

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 69/413 (16%), Positives = 137/413 (33%), Gaps = 44/413 (10%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 363

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 364 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 422

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 423 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 481

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 482 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 523

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 524 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 572

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 573 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 628

Query: 358 DQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSK 409
              C +  +K+  +          D D G  +  +   A L  +   ++VG K
Sbjct: 629 --TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEK 679


>gi|14590847|ref|NP_142919.1| prolyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|74579173|sp|O58734|SYP_PYRHO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|3257420|dbj|BAA30103.1| 480aa long hypothetical prolyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 480

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 168/449 (37%), Gaps = 80/449 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  +++E    A I   +  ++         G+  WLP G K + N+   I EE  
Sbjct: 11  FSEWFNEVIEE----AGILDKRYPVK---------GMNVWLPYGLKIMRNIEKFIHEEME 57

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
           RTG  E+  P L    +   E+     +  E+  +     +  D  ++  PT E  M  +
Sbjct: 58  RTGHQEVLFPALIPETEFKKEAEHIAGFEGEVFWVTHAGHEPLDVRLVLRPTSETAMYSM 117

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I+S+ +LPF  YQI   +R E +    ++R RE                       
Sbjct: 118 FALWIRSHADLPFKVYQIVNVYRYETKHTRPLIRVREISRF------------------- 158

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                           F       + +    +   D  I     
Sbjct: 159 --------------------------------FEAHTAHADFEDAERQIKEDLEIFDNLM 186

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               +  + S   +W     A   +  E +    P+      R +++G +  +   +S  
Sbjct: 187 RKLALAYIISKRPEWDKFPGAFYSLGAEVVM---PDG-----RTLQIGTMHNYKQNFSKA 238

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +  ++  DG   YV   ++G+ + R++AAVI    D +G++ P ++AP ++ ++ I   
Sbjct: 239 YNILYEKEDGTHDYVHQTTFGM-SERLLAAVIAIHGDDRGMVLPPTIAPIQVVIVPIPKK 297

Query: 358 --DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             ++      + I   L   G  V+ D   ++ G +F   +L G P++V VG   V +S 
Sbjct: 298 GSEEEVYSYAKGIEEELRDAGIRVYLDLRDKRPGWKFYDWELKGVPVRVEVGPIDVQNST 357

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           V +  R    +  +  EE+++     F +
Sbjct: 358 VVLARRDKLEKITVKREELVDKVRELFED 386


>gi|12045236|ref|NP_073047.1| threonyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|1351178|sp|P47615|SYT_MYCGE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|3844963|gb|AAC71602.1| threonyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|166078630|gb|ABY79248.1| threonyl-tRNA synthetase [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 564

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/432 (16%), Positives = 142/432 (32%), Gaps = 34/432 (7%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   +D      +L L +        G+  WL  G    + +   +  +Q   G   + 
Sbjct: 161 EERLKKDHRSLGKQLELFS-FDPLIGAGLPIWLAKGTTLRNIIGNFVHHQQLLFGFNTVC 219

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P L + +L+  SG Y  Y ++M      + +AM+  P        IF+    SY+ +P 
Sbjct: 220 SPVLANIELFKISGHYQHYKEDMFPAIKLDSQAMMLRPMTCPHHCLIFKQKRYSYKKMPQ 279

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F +  +  R E      G+ R R   + D + F    +         F    ++  + G
Sbjct: 280 RFSEDSILHRFEASGGLIGLERVRCMTLLDNHIFCRADQIKSE-IKNAFNLIQKVNKKFG 338

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +                   D      F     +     S+  +    +++    
Sbjct: 339 FIFDRIDLSLH--------------DPKNQSKFIDNPGLWRESESQMENVLKDLNIQYQK 384

Query: 250 E-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           E    A Y    D   + +F  +     ++   ++    F    K+      T+      
Sbjct: 385 EIGAAAFYGPKIDFQFKTIFKKMI---TIATIQLD----FLLPEKFD----LTYIDKKNT 433

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                +    +G +      I +  +     +P  +AP +  +I +    Q    A +K+
Sbjct: 434 LKKPVIIH--VGIIGTYERFIAALLEKTSGNFPLWLAPVQAVIIPVNI--QKHLKAAKKL 489

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIRE 427
           Y +L K    V  DD  +++  +   A +   PLQ+IVG K + +  K+  +        
Sbjct: 490 YNKLLKENIRVNLDDNQDRLAKKVRQAIIEKIPLQLIVGDKEIENLEKLTCRGFKGEKIT 549

Query: 428 DMSLEEVINYAS 439
            +S    +    
Sbjct: 550 RISFNNFVKRVR 561


>gi|298245367|ref|ZP_06969173.1| prolyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297552848|gb|EFH86713.1| prolyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 578

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 99/263 (37%), Positives = 144/263 (54%), Gaps = 8/263 (3%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+     L+E   D E  +  L+ R G + Q + G+YS LPLG++ +  +  IIR E
Sbjct: 1   MRYSQLLGGTLRERAHDVESTNLDLLTRGGFVRQLTSGVYSMLPLGERVMRKLTEIIRAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWV---ESG---RYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
             R G  E+S+P LQ  ++W    +SG   R + YG  +  L DR ++ ++ GPTHEE+ 
Sbjct: 61  MERIGGQEVSMPVLQPREIWEARPQSGKASRAEGYGPVLFSLHDRRERELVLGPTHEEIC 120

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           T + +  I+SYR+LP   +Q+Q KFRDE R R G++R REFLMKD YSFD   EG   ++
Sbjct: 121 TLLAQEFIRSYRDLPRLVFQVQRKFRDEPRARGGLLRLREFLMKDLYSFDADEEGLNANF 180

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP--I 232
             +  +Y RIF R GL  I + A+SG IGG  S EFI L + GE  +             
Sbjct: 181 ELVREAYCRIFARCGLDFIVVEADSGAIGGKESLEFIALTEAGEDTILRCTGCGYAANVE 240

Query: 233 PSENTDFDDIISLNSIVEQWTAP 255
            +E    + + +    +E+   P
Sbjct: 241 KAEFVRPERVSAEEQTLEEVYTP 263



 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/186 (35%), Positives = 102/186 (54%), Gaps = 2/186 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ +     +      +  + RG E+GHIF  GT YS   +ATF  A+G+   + M S
Sbjct: 390 WADIASAYEGAACVRCGGRLHALRGCELGHIFKLGTIYSDLFNATFLDAEGRTQPLIMAS 449

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R++A ++E  HD +G+ WP +VAP+ +SL+ I    +    A E++YA L   G
Sbjct: 450 YGIGISRLLACIVEQQHDARGLTWPLAVAPYAVSLVGIDLVKEEIGRAAEQLYADLCAAG 509

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +V +DD  E  G +F  ADLLG PL+V+V  + +    VE+K R +   + +SL E +N
Sbjct: 510 VEVLFDDRHESAGIKFNDADLLGLPLRVVVSKRSLKQGGVELKVRTSQESQIVSLSEALN 569

Query: 437 YASHRF 442
                 
Sbjct: 570 EIQQVL 575


>gi|218282600|ref|ZP_03488838.1| hypothetical protein EUBIFOR_01424 [Eubacterium biforme DSM 3989]
 gi|218216471|gb|EEC90009.1| hypothetical protein EUBIFOR_01424 [Eubacterium biforme DSM 3989]
          Length = 564

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 103/250 (41%), Positives = 153/250 (61%), Gaps = 1/250 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F   L+EN +D +  S  L++R GMI + S GIY  +P+G+K L  V  IIREE
Sbjct: 1   MKLSQSFFYTLRENAKDEDSVSSNLLVRAGMIKKCSNGIYMIMPMGKKVLSKVENIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +   A E+ +P L   D++V+SGR +++G  M  L+DR +K  + GPTHEE+       
Sbjct: 61  MDAKDAQELLMPALIPEDVYVQSGRREAFGSNMFSLSDRYNKRYVLGPTHEELFAVASSM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             KSY++ P+  YQIQ K+RDE RPR+G++R REF+MKDAY+FD+   G   +YNKM+ +
Sbjct: 121 DGKSYKDFPYNLYQIQTKYRDETRPRYGLIRVREFIMKDAYTFDVDEAGLDVAYNKMYDA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y RI  RLGL+   ++A++G +GG LS E+  L+  GE  V       D+    E T+  
Sbjct: 181 YCRIMDRLGLEYKIVKADTGAMGGLLSEEYQALSSIGEDVVVGC-VGCDYSSNLEITEVV 239

Query: 241 DIISLNSIVE 250
           D +  ++  E
Sbjct: 240 DTMQDSTEEE 249



 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/188 (32%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+   K  D  P+   K     GIEVG++F  GTKYS  M+  +  A+ +   V MG
Sbjct: 377 EVADLCQVKEGDICPKCGKKLTFQHGIEVGNLFKLGTKYSKSMNLYYTDANNQLQPVWMG 436

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R +AAV +  HD  GI WP  +APF+++++ +   D+        +Y    + 
Sbjct: 437 SYGIGLERCMAAVADQHHDDFGIKWPVEIAPFRLAIVPVSLKDEEQVKIANDLYEYCKEH 496

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             DV  DD  E+ G +F   +L+G P ++ VG + V + K+E   R TG + ++++E+V 
Sbjct: 497 KFDVILDDRNERPGVKFKDMELIGIPYRITVG-RGVKEGKLEWTDRYTGEKSEIAIEDVY 555

Query: 436 NYASHRFS 443
           +     F+
Sbjct: 556 SEIEKVFA 563


>gi|325336816|gb|ADZ13090.1| Threonyl-tRNA synthetase [Riemerella anatipestifer RA-GD]
          Length = 591

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 135/391 (34%), Gaps = 39/391 (9%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L  L+E  R D      +L L T    +   G+  WLP G      + + + E Q + G
Sbjct: 229 YLERLEEAKRRDHRKLGKELGLFT-FSEKVGAGLPLWLPKGAALRKKLESFLSEAQRKGG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              +  P + + +L+  SG Y+ YG +  +        +  +  P +     +++++   
Sbjct: 288 YEFVMTPHIGNIELYKTSGHYEKYGADSFQPIKTPHVGEEFLLKPMNCPHHCEVYKAQQW 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SY++LP  + +    +R E      G+ R R F   DA+ F  TP+     + K+    L
Sbjct: 348 SYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFC-TPDQLLEEFEKVIDLVL 406

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +F  LG +    +                  D      +   +       S        
Sbjct: 407 YVFKSLGFEDFIAQVSLR--------------DKENRAKYIGSEENWEKAESAIITAAKN 452

Query: 243 ISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             LN++VE    A Y    D     + D+L  + ++    ++                 T
Sbjct: 453 KGLNTVVEYGEAAFYGPKLDFM---VKDALGRSWQLGTIQVDYNLP--------ERFDLT 501

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           + G+D + H    +     G+M    A++  +  G   +W             +    + 
Sbjct: 502 YVGSDNERHRPIMIHRAPFGSMERFIAILIENTAGDFPLW------LNPDQYILLPISEK 555

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  +K+   L         D+  E+ G +
Sbjct: 556 YTDYAKKVSQLLENHDICGLVDERNEKTGKK 586


>gi|33861065|ref|NP_892626.1| prolyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|81835597|sp|Q7V2H0|SYP_PROMP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|33639797|emb|CAE18967.1| Prolyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 600

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 101/241 (41%), Positives = 143/241 (59%), Gaps = 5/241 (2%)

Query: 1   MRRSKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           MR +  F L  L++ P +AEI SH+L+L+ G I + + GIY+++P+  + ++ ++ II +
Sbjct: 1   MRVTTSFPLGTLRDTPSEAEIISHQLLLKGGYIRRVNSGIYAYMPIMLRVIEKISTIIEK 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTD 116
           E N     ++ +P L  A+LW +S R++ Y      M  L DR  K     PTHEEV+T 
Sbjct: 61  ELNNIYCSKLLLPQLHPAELWKKSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITS 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I    I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKDAYSF  + E     Y K
Sbjct: 121 IASEMINSYKQLPLCFYQIQTKFRDEIRPRFGLMRSREFIMKDAYSFHSSKEDLASFYEK 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           M  +Y  IF   GL ++ + A+SG IGG  S EF+V AD GE  +  ++    +    E 
Sbjct: 181 MEKAYENIFKNCGLDTVGVDADSGAIGGAASKEFMVTADAGEDSILFTESGS-YAANIEK 239

Query: 237 T 237
            
Sbjct: 240 A 240



 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 4/184 (2%)

Query: 261 DVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N K  D +      +    RGIE+GHIF  G KYS  ++A F   +G+   + MG Y
Sbjct: 409 DIRNAKKGDCISQESNEELKEKRGIEIGHIFQLGQKYSEKLNAKFSDKNGQLKNLWMGCY 468

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+  A IE +HD  GI WP  ++PF+I +I     D + ++  ++IY        
Sbjct: 469 GIGVTRIAQAAIEQNHDENGISWPIQISPFEILIIPTNLKDPIQKELTQEIYEEFISNQI 528

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD  ++ G +F  ADL+G P Q+I+G   + + +VE   R +  +  ++ + ++  
Sbjct: 529 DVLLDDRDDRAGVKFKDADLIGIPFQIIIGRDSI-NKEVEFFSRSSKSKIKIASKNLLEK 587

Query: 438 ASHR 441
               
Sbjct: 588 FISE 591


>gi|89898569|ref|YP_515679.1| prolyl-tRNA synthetase [Chlamydophila felis Fe/C-56]
 gi|114152181|sp|Q253K4|SYP_CHLFF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|89331941|dbj|BAE81534.1| prolyl tRNA synthetase [Chlamydophila felis Fe/C-56]
          Length = 577

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 97/279 (34%), Positives = 154/279 (55%), Gaps = 13/279 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F    +   +DA + S++L+ + G I + +KG+Y++ PL  +    +  I+REE
Sbjct: 1   MRTSQLFYKTSKNANKDAAVLSYELLEKAGYIFKTAKGVYTYTPLFWRVALKMMDIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L  A+LW ++GR++++  E  +  L DR DK +   PTHEEV+T   
Sbjct: 61  LNAIGGQELMLPILHPAELWQKTGRWEAFRSEGLLYTLTDREDKELCLAPTHEEVVTMFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +   + LP   YQI  KFRDE+RPRFG+MR+REFLM+D+Y+F  +PE     Y+K+ 
Sbjct: 121 SQWLSGRKQLPIHLYQIATKFRDEIRPRFGLMRAREFLMEDSYTFSDSPEQMNEQYDKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-----FCSKDFMDFPIP 233
            +Y +IF RL +K + + A+ G IG   S EF VL   GE  +     + +       +P
Sbjct: 181 RAYQKIFDRLEIKYVIVEADGGKIGKGKSEEFHVLCSLGEDTICVSGDYGANIEAAVALP 240

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            + T   + +     +E+   P   T +  N + F S+P
Sbjct: 241 VQYTYDKEFL----PIEEVATPDVRTIE--NLQDFFSIP 273



 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 109/254 (42%), Gaps = 5/254 (1%)

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                A    I  +L  E   +        F + +                    ++   
Sbjct: 316 DECALASDEEIQNNLGTEKGFVGPLNCPIEFYADETTRCMTNFICAGNAKDKHYKNVNWD 375

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRV---SARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
              P    +D    +  D  P N         G+EV HIF  GT+Y+      F+   G+
Sbjct: 376 RDIPRPEYADFLLAEAGDLCPSNGNAPYEIFEGVEVAHIFNLGTRYTECFDVGFQNEQGE 435

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                MG+YGIG  R +AA +E   D +GI+WP ++APF IS++     D   ++A EKI
Sbjct: 436 QQTCWMGTYGIGIGRTLAACVEQLADDRGIVWPKAIAPFDISILY-NGGDSASQEAAEKI 494

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L   G     DD  E++G +   +DL+G P ++I+G  F++   +EI+ R +G +  
Sbjct: 495 YTELQNSGYAPLLDDRNERLGFKLKDSDLIGIPYKLILGKTFLNSGTLEIESR-SGEKFS 553

Query: 429 MSLEEVINYASHRF 442
           +  ++ +++  +  
Sbjct: 554 VQPKDFVHWCENYL 567


>gi|868027|gb|AAC43605.1| threonyl-tRNA synthetase [Buchnera aphidicola]
 gi|1098080|prf||2115235B Thr-tRNA synthetase
          Length = 642

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/439 (16%), Positives = 128/439 (29%), Gaps = 49/439 (11%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVP 72
             RD       L L    + + S G+  W   G    + +   +RE+        E+  P
Sbjct: 239 KKRDHRKIGKLLNLY--HMQKESPGMIFWHNNGWIIFNELEIFVREKLKGIINYKEVKTP 296

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L    +W +SG +D+Y   +       ++     P +      IF   +KSYR+LP   
Sbjct: 297 LLIHKSIWQKSGHWDNYQDRIFT-TSSENREYCIKPMNCPGHVQIFNCGLKSYRDLPIRM 355

Query: 133 YQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            +     R+E      G+MR R F   DA+ F    +      N        ++     K
Sbjct: 356 AEFGSCHRNESSGSLHGLMRIRNFTQDDAHIFCTQEQLRYE-INNCIKMIYDLYSTFNFK 414

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
            I ++  + P            A+   + V                   +        E 
Sbjct: 415 KILVKFSTRPKKRIGDESVWDQAEKDLSDVLI-----------------ENNLKFEHQEG 457

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y    +     L DSL  N +     ++    FY   +        +         
Sbjct: 458 EGAFYGPKIEF---VLQDSLDRNWQCGTIQLD----FYLPIRLRSF----YIDEHNHQ-- 504

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                  I   R +   IE         + +         + I +      +  +KI   
Sbjct: 505 ----KIPIIIHRAILGSIERFIGILIEEFQEIPTWLSPIQVVILSITDSHINYVKKIVQH 560

Query: 372 LSKVGCDVFWDDMGEQIGSQFA----VADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIR 426
            S +   V  D   E+IG +       ++ +   L      K   +  K+ ++ R     
Sbjct: 561 FSDINIRVESDLRNEKIGFKIRATYIASNSIYINLW----RKEKLNLKKISVRTRNGYNL 616

Query: 427 EDMSLEEVINYASHRFSNN 445
             + ++  I          
Sbjct: 617 GIIDIDCFIKKLQKEIFTR 635


>gi|18977665|ref|NP_579022.1| prolyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
 gi|74580758|sp|Q8U1C4|SYP_PYRFU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|18893393|gb|AAL81417.1| prolyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
          Length = 479

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/449 (19%), Positives = 167/449 (37%), Gaps = 80/449 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  +++E    A I   +  ++         G+  WLP G K + N+   I EE  
Sbjct: 11  FSEWFNEVIEE----AGILDKRYPVK---------GMNVWLPYGLKIMKNIEKFIHEEME 57

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
           RT   E+  P L    +   E+     +  E+  +     +  D  ++  PT E  M  +
Sbjct: 58  RTDHQEVLFPALIPETEFQKEAEHIAGFEGEVFWVTHAGHEPLDVRLVLRPTSETAMYSM 117

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I+S+ +LPF  YQI   +R E +    ++R RE                       
Sbjct: 118 FALWIRSHADLPFKVYQIVNVYRYETKHTRPLIRVREISRF------------------- 158

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                           F       + +    +   D  I     
Sbjct: 159 --------------------------------FEAHTAHADFEDAERQIKEDLEIFDNLM 186

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               I  + S   +W     A   +  E +    P+      R +++G +  +   ++  
Sbjct: 187 KKLAIAYVISKRPEWDKFPGAYYSLGAEVVM---PDG-----RTLQIGTMHNYKQNFAKA 238

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +  ++  DG   YV   ++G+ + R++AAVI    D +G++ P ++AP ++ ++ I   
Sbjct: 239 YNILYEKEDGTHDYVHQTTFGM-SERLLAAVIAIHGDDRGMVLPPTIAPIQVVIVPIPKK 297

Query: 358 --DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             ++       +I   L   G  V  D   ++ G +F   +L G P+++ VG +  ++  
Sbjct: 298 GSEEEVYSYAREIEEELKLAGIRVHLDLRDKRPGWKFYDWELKGVPVRIEVGPRDAAEKT 357

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           V +  R    +  +S EE+++     F +
Sbjct: 358 VVLARRDKLEKITVSREELVDKVRELFDD 386


>gi|87122885|ref|ZP_01078753.1| threonyl-tRNA synthetase [Marinomonas sp. MED121]
 gi|86161836|gb|EAQ63133.1| threonyl-tRNA synthetase [Marinomonas sp. MED121]
          Length = 572

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/380 (17%), Positives = 120/380 (31%), Gaps = 41/380 (10%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L  L+E   RD      KL L      + + G+  W   G      +   IR++Q  
Sbjct: 230 KAHLHRLEEAEKRDHRKLGKKLDLF--HQQEEAPGMVFWHHKGWSLYQTIEQYIRQKQRE 287

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW +SG +  +   M       ++     P +      ++   +K
Sbjct: 288 NGYQEIKTPQIVDRVLWEKSGHWGKFSSGMFT-THAENRDYAIKPMNCPCHVQVYNQGLK 346

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F+  D + F +  +  +   +       
Sbjct: 347 SYRDLPLRLAEFGSCHRNEPSGSLHGIMRVRNFVQDDGHIFVMEDQIQEE-VSAFIKLLH 405

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            I+   G   I  R  + P     S E    ++    +   + +     +P E       
Sbjct: 406 EIYDDFGFTDIIYRLSTRPEQRVGSDEVWDKSEKALAEALNAANLEWEELPGE------- 458

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                      A Y    +     L D++    +      +    F   ++ S    A F
Sbjct: 459 ----------GAFYGPKIEF---SLKDAIGRIWQCGTIQCD----FSMPSRLS----AQF 497

Query: 303 KGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              DG       +    +G++     ++    +G    W        +++          
Sbjct: 498 VSEDGTRQTPVMLHRAILGSLERFIGILIEETEGSLPAWLSPEQVVVMNIT------DRQ 551

Query: 362 RDACEKIYARLSKVGCDVFW 381
              CE +  R +  G     
Sbjct: 552 SQYCEDLVKRFNSNGLRAKL 571


>gi|254525440|ref|ZP_05137492.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
 gi|221536864|gb|EEE39317.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
          Length = 598

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 101/240 (42%), Positives = 143/240 (59%), Gaps = 5/240 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S + L  L++ P +AEI SH+L+L+ G I + + GIY+++P+  + ++ ++AII  E
Sbjct: 1   MTTS-FPLGTLRDTPSEAEIISHQLLLQAGYIRRVNSGIYAYMPIMLRVIEKISAIIERE 59

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTDI 117
            N  G  ++ +P L  ADLW +S R++ Y      M  L DR  K     PTHEEV+T I
Sbjct: 60  LNSIGCTKLLLPQLHPADLWRKSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITSI 119

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKD YSF  + +     Y K+
Sbjct: 120 ASETINSYKQLPQCFYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHSSEKDLASFYEKV 179

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y  IF   GL+++ + A+SG IGG  S EF+V AD GE  +  +K    +    E  
Sbjct: 180 GNAYENIFKSCGLETVGVEADSGAIGGASSKEFMVTADAGEDSILFTKSGS-YAANIEKA 238



 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 4/184 (2%)

Query: 261 DVHNEKLFDSL---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D+ N K  D +    + +    +GIE+GHIF  G KYS  ++A F   DGK   + MG Y
Sbjct: 407 DIRNAKKGDKISIANDEELKEKKGIEIGHIFQLGQKYSEKLNAKFSDKDGKLKNLWMGCY 466

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+  A IE +HD KGI WP  ++PF++ +I     D +  +  E+IY        
Sbjct: 467 GIGVTRIAQAAIEQNHDQKGICWPIQISPFEVIIIPTNLKDPIQSELTEQIYNNFLINKI 526

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV  DD  ++ G +F  A+L+G P Q+I+G   V + +VE+  R    +  +S ++++  
Sbjct: 527 DVLLDDRNDRAGVKFKDAELIGIPFQIIIGRDSV-NKEVELLSRTNNTKFKISTDKLLET 585

Query: 438 ASHR 441
               
Sbjct: 586 FISE 589


>gi|149244270|ref|XP_001526678.1| threonyl-tRNA synthetase, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146449072|gb|EDK43328.1| threonyl-tRNA synthetase, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 486

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/482 (15%), Positives = 147/482 (30%), Gaps = 90/482 (18%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
            EI++ +L+  T +    S G   +LP G + L+ +   ++ +Q + G  E+  P +   
Sbjct: 42  HEISTKQLLYTTDI---TSPGSIFFLPHGTRILNKLIQFMKNQQIKYGFHEVVTPLIFKT 98

Query: 78  DLWVESGRYDSYGKEMLRLADRN----------------------------------DKA 103
            LW +SG +D+Y  +M ++   +                                  +  
Sbjct: 99  KLWKKSGHWDNYKDDMFKVVGNDKSKEEVVVVLAPTVQSESLTDDGNDSALQEAFEEEHE 158

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYS 162
               P +      IF    +SY  LP  +       R+E      G+ R R F   D + 
Sbjct: 159 YGLKPMNCPGHCMIFSKFERSYNELPIRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHI 218

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           F                     +   G+  I     + P                E +  
Sbjct: 219 FC-DMSHIDQEIANTLNLIKDTYSIFGIDKIEYYLSTRP----------------EEKYI 261

Query: 223 CSKDFMDFPIPSENTDFDDI--ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
              +  D          D         + E   A Y    DV    L D+  +  +V+  
Sbjct: 262 GEIETWDAAELKLKQVLDRSAGKGNWQVREGDGAFYGPKIDVL---LTDAFGKKHQVATI 318

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            ++    F             +   DG   +  + +     G++    A++    D    
Sbjct: 319 QLD----FQLP----KRFDLKYISEDGSRNNQPILIHRAVFGSLERFFAILL---DHYQG 367

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYAR--------------LSKVGCDVFWDDM 384
            WP  + P +  +I +    +      E++  +              L+     V  D  
Sbjct: 368 KWPFWINPRQAIIIPVN---ETHTARAEELQRKLCGDIINTNDPVSPLTGYNFHVDVDKR 424

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              IG +   A   G+   +I+G K +++    ++ R      +++ E++         +
Sbjct: 425 PATIGMRTKDAIQKGYSYLIIIGDKDIANGTYAVRSRDDRTIYNLTGEDIYKKFIDLEKS 484

Query: 445 NR 446
            +
Sbjct: 485 YQ 486


>gi|54023348|ref|YP_117590.1| putative threonyl-tRNA synthetase [Nocardia farcinica IFM 10152]
 gi|54014856|dbj|BAD56226.1| putative threonyl-tRNA synthetase [Nocardia farcinica IFM 10152]
          Length = 419

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 134/430 (31%), Gaps = 49/430 (11%)

Query: 17  DAEIASHKLMLRTG--MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           D      +L L     +I     G+  WLP G      +   IR  ++R G   +  P L
Sbjct: 20  DHRKLGRELDLFDTDPLI---GSGLPYWLPSGGALRHALEEYIRTAEHRAGYRHVHSPVL 76

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
              +L+  SG +  Y ++M    D   + ++  P+       I+RS   SYR LP    +
Sbjct: 77  GKRELYEISGHWAHYREDMYPPMDVGGEQVVLRPSLCPHHALIYRSRSHSYRELPLRIAE 136

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +   +R EL    G +     +  +      T +      +       R    LG+    
Sbjct: 137 LGAMYRAELSGVLGGLSRVRAIHLNDAHIFCTEDQVGAEVHAALAMIARAHAALGIAPHR 196

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            R      GG                   +    +                    +   A
Sbjct: 197 FRLSLPGPGGK---------------YVPNPAMWERATGVLVEALRAAGIDYEPADDEAA 241

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-Q 313
            Y    DV   +  DS      +S   ++      F           + GADG  H    
Sbjct: 242 FYGPKIDV---QFLDSAGREFTLSTVQVDFHQPEQFD--------LCYIGADGAKHRPVM 290

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    IG++    A +    +  G  +P  +AP ++ ++ +         A E +   L 
Sbjct: 291 VHRSIIGSVERAVAHLV---EVHGGAFPVWLAPTQVVVLPLAG---EQHAAAEDVVRVLR 344

Query: 374 KVGCDVFW---DDMGEQIGSQFAVADLLG--FPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
                      D     +G++       G   P QV+VG K V+   + ++ R       
Sbjct: 345 AADVRAELAGHD--QGSLGARIR----AGRQVPYQVVVGPKEVAAGTLAVRLRSGEQLAP 398

Query: 429 MSLEEVINYA 438
           + + + +   
Sbjct: 399 LPVSDFLARV 408


>gi|166033170|ref|ZP_02235999.1| hypothetical protein DORFOR_02892 [Dorea formicigenerans ATCC
           27755]
 gi|166027527|gb|EDR46284.1| hypothetical protein DORFOR_02892 [Dorea formicigenerans ATCC
           27755]
          Length = 480

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 154/415 (37%), Gaps = 66/415 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  ++LP G    + + A +      TG   + +P L    L   E+   + +  E+  +
Sbjct: 39  GCLNYLPNGFAIWELIKADLDRRFKETGVENVYLPCLIPEALLEKEADHIEGFAPEVAWV 98

Query: 97  ----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +R  +     PT E +  D++   ++SYR+LP  + Q     R E   R   +RS
Sbjct: 99  THGGMERLQERFCVRPTSETLFCDLWARTVQSYRDLPKVWNQWCSVLRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T              Y     R              I  D   E + 
Sbjct: 158 REFLWQEGHTIHAT--------------YEEAEQRTIQMWQ--------IYKDFYKETMA 195

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +       V   K   +    +++T                  Y   + +H+        
Sbjct: 196 V-----PFVAGRKAEHEKFAGAQDT------------------YTVEALMHD-------- 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++     +FG+ +       +   D +   V   S+G+ + R + A+I   
Sbjct: 225 ------GKALQSATSHFFGSGFPEAFGIQYIDKDNQLKNVYETSWGL-STRSIGALIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP +  +I I  H +   +   ++   L K G  V  DD  +  G +F
Sbjct: 278 GDDDGLVIPPHLAPVECRVIPIAQHKEGVLEKANELLDELKKAGYRVKIDDSEKSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +  ++LG P ++ +G K + +++V +  R T  +  +SL+E+           + 
Sbjct: 338 SEQEILGIPTRIEIGPKDIENNQVVVVRRDTREKIVVSLDEITTKLREILETIQQ 392


>gi|119872334|ref|YP_930341.1| prolyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
 gi|152112945|sp|A1RSR6|SYP_PYRIL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119673742|gb|ABL87998.1| prolyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
          Length = 488

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 94/420 (22%), Positives = 164/420 (39%), Gaps = 69/420 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYG 90
           +    KG Y W P G K   NV  +IR   + TG  E+  P     + +  ES     + 
Sbjct: 35  VRYPVKGAYVWRPYGMKLRRNVENLIRRIHDETGHEEVLFPVFIPYEFFSKESQHIRGFE 94

Query: 91  KEMLRLAD--RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           KE+  ++      + +I  PT E  +  + +  I+ Y++LP   YQI   FR E +    
Sbjct: 95  KEVFWVSKGGEGGERLILRPTSETAIMPMVKLWIQDYKDLPLRLYQIVSVFRAETKMTHP 154

Query: 149 VMRSREFLM-KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           ++R RE  M K+A++   T E ++    +    Y RIF  + L  +  +           
Sbjct: 155 MIRLREISMFKEAHTVHATREDAERQIREAVEIYKRIFDEMCLAYMINK----------- 203

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                            +   D    +E T   D I                        
Sbjct: 204 -----------------RPNWDKFAGAEYTIAFDTI------------------------ 222

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              LP+      R +++G + Y G  ++     T+   DG        SYGI + R +AA
Sbjct: 223 ---LPDG-----RTLQIGTVHYLGVNFTKVFEVTYLDIDGTRKLAHTTSYGI-SERSIAA 273

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDD- 383
           ++ +  D  G   P  +AP ++ ++ I   ++         +++Y  L  VG  +  DD 
Sbjct: 274 MLITHGDDGGTTLPPKLAPIQVVIVPIFYGEEEMPTVMKFVDEVYRMLRDVGIRIHIDDR 333

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             +  G +F   +L G PL++ VG + +   +V +  R T  +  +SL E+++      S
Sbjct: 334 RDKTPGWKFYYWELKGVPLRIEVGRRDIEKRQVVVTRRDTLEKYAVSLGELVDAVKQLMS 393


>gi|329942565|ref|ZP_08291375.1| prolyl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|332287196|ref|YP_004422097.1| prolyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|313847792|emb|CBY16782.1| prolyl-tRNA synthetase [Chlamydophila psittaci RD1]
 gi|325506498|gb|ADZ18136.1| prolyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|328815475|gb|EGF85463.1| prolyl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|328914444|gb|AEB55277.1| prolyl-tRNA synthetase [Chlamydophila psittaci 6BC]
          Length = 577

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 91/275 (33%), Positives = 147/275 (53%), Gaps = 5/275 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F    +   ++A + S++L+ + G I + +KGIY++ PL  +    +  IIREE
Sbjct: 1   MKTSQLFYKTSKNANKEASVLSYELLEKAGYIFKTAKGIYTYTPLFWRVARKMMEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L  A+LW ++GR++++  E  +  L DR DK     PTHEE+++   
Sbjct: 61  LNAIGGQELVLPILHPAELWQKTGRWEAFRSEGLLYTLKDREDKEFCLAPTHEEIVSLFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +   ++LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE     Y K+ 
Sbjct: 121 SQWLSGRKHLPLHLYQIATKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMNKQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENT 237
            +Y  IF RL ++ + + A+ G IG   S EF VL+  GE  +        +        
Sbjct: 181 QAYQNIFDRLDIQYVIVEADGGKIGKGKSEEFHVLSSLGEDTICVSGHYGANIEAAVAQP 240

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                      +E+ + P   T +  N + F S+P
Sbjct: 241 PQYTYDKEYLPIEEVSTPEVRTIE--NLQDFFSVP 273



 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 107/258 (41%), Gaps = 5/258 (1%)

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                A    I   L  E   +        F + +                    ++   
Sbjct: 316 DECSLASDEEIQKHLGVEKGFIGPLNCPIDFYADETTQCMTNFICAGNVKDKHYKNVNWD 375

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSAR---GIEVGHIFYFGTKYSLPMSATFKGADGK 308
              P    +D    +  D  P N         G+EV HIF  GT+Y+      F+   GK
Sbjct: 376 RDIPRPEYTDFLLAEAGDLCPANNNAPYEIFAGVEVAHIFNLGTRYTECFEVVFQDEQGK 435

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                MG+YGIG  R +AA IE   D +GI+WP ++APF I+++     D  C +A EKI
Sbjct: 436 PQSCWMGTYGIGIGRTLAACIEQLADDRGIVWPKAIAPFDITILY-NGGDATCEEAAEKI 494

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L   G     DD  E++G +   +DL+G P ++I+G  F++   +EI+ R +  +  
Sbjct: 495 YKELQCHGYAPLLDDRNERLGFKLKDSDLIGIPYKLILGKTFLNSGMLEIESR-SIEKFS 553

Query: 429 MSLEEVINYASHRFSNNR 446
           +  ++  N+      + R
Sbjct: 554 VEPKDFFNWCKSHLPSPR 571


>gi|289617913|emb|CBI55490.1| unnamed protein product [Sordaria macrospora]
          Length = 497

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/478 (17%), Positives = 154/478 (32%), Gaps = 77/478 (16%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           E P D      +  L    I  +S G   +LP G +  + +   +R++    G  E+  P
Sbjct: 51  EAP-DHRDLGTQQELFMTSI--YSPGSPIFLPNGARIFNRLVEYLRKQYVHYGFQEVITP 107

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRND-----------KAMIYGPTHEEVMTDIFRSH 121
           T+    LW +SG  ++Y  +M  +   +                  P +      IF + 
Sbjct: 108 TIYKKALWAKSGHLENYADDMFTVTSTSPSRADVTEAGEVDEYGLKPMNCPGHCLIFAAQ 167

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR+LP  +       R+E+     G+ R R F   D + F   P   +   +K    
Sbjct: 168 KRSYRDLPIRYADFSPLHRNEISGALSGLTRVRRFHQDDGHIFCR-PNQIEDEISKTLEF 226

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             R++    L S  ++  + P     S E                   +    S     D
Sbjct: 227 IRRVYKDFRLGSYRLKLSTRPENYMGSLE-----------------DWEHAEGSLKRALD 269

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 ++ E   A Y    DV    L DS  +  + +   ++    F    ++ L   A
Sbjct: 270 TSGEPWTLNEGDGAFYGPKIDVI---LKDSDGKEHQTATIQLD----FQLPKRFELEYQA 322

Query: 301 ---------------TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                                G    V +    +G+   + A++    +     WP  + 
Sbjct: 323 PAPELEAKGETTTDPELLAVSGPVRPVMIHRAVLGSAERMFALLI---EHFNGKWPFWLN 379

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSK----------VGCDVFWDDMGEQIGSQFAVA 395
           P +  ++ +    +       K    L             G  +  DD    +  +   A
Sbjct: 380 PRQAIVLTVND-SEPVLQFARKTQRVLLGTDSADSHVSPSGLAIDLDDSARSLSLKIREA 438

Query: 396 DLLGFPLQVIVGSKFVSDSKVEI---KHRLTGIR-----EDMSLEEVINYASHRFSNN 445
              G+ + ++VG K V++  V +       TG +       M+ EE++ +   +    
Sbjct: 439 KTRGYGMVIVVGPKDVANGTVAVDATGGLHTGDKPAQKNLVMAPEELLQFMKAKVDAY 496


>gi|260775804|ref|ZP_05884700.1| threonyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608220|gb|EEX34389.1| threonyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 392

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/430 (17%), Positives = 144/430 (33%), Gaps = 48/430 (11%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           +      +L L    I +   G+  W P G +    V A IR  Q R G  E+  P L +
Sbjct: 4   EHRKIGKQLKLFD--ISESVSGMVDWYPKGHELYRKVQAYIRSVQKRYGYHEVRSPVLAN 61

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +W  SG  + YG+ M       +  +   P        +F   + SYR LP+   +  
Sbjct: 62  HSVWTTSGHNEKYGENMF---HVPEHNLSVKPMSCPFHISMFNELVSSYRELPYRIAEFG 118

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH---SYNKMFVSYLRIFHRLGLKS 192
           L  R+E      G+ R R F   D + F    +           +F  Y         K 
Sbjct: 119 LCHRNESSGSLNGLFRLRAFNQDDGHIFCQEQQIKDELKHFCAMLFEMYEHFG--FSRKD 176

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           I ++    P     S E    ++    +                   D++     ++   
Sbjct: 177 ISVKISLRPKNKIGSDELWSRSELYLQE-----------------GLDELGIGYELLPGE 219

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHY 311
            A Y A  +     L DSL  + +           F      S    ++F    G  ++ 
Sbjct: 220 GAFYGAKVEF---SLKDSLDRHWQCG--------TFQLDFFLSEKFDSSFINELGDSEYP 268

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           V +    +G++    A++   + G+  +  +  A   + L          +  C ++  +
Sbjct: 269 VVLHRAALGSLERFIAILLEHYKGRLPVQFNPYAVVLVPLTV------EHQAYCHELQEQ 322

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L  +G     DD    +G +   +  +     +++G   +    + +K       +++S 
Sbjct: 323 LGAMGIACIIDDSDNSVGYRVRQSYKMKCNYLIVIGDDELKSDVLGLKS--GKDVKEVSR 380

Query: 432 EEVINYASHR 441
           E + ++   +
Sbjct: 381 EHLSSFFIEQ 390


>gi|303390083|ref|XP_003073273.1| threonyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506]
 gi|303302418|gb|ADM11913.1| threonyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506]
          Length = 646

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 146/423 (34%), Gaps = 47/423 (11%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y     +   RD      +L L      ++S G   +LP G    + +   +REE  + 
Sbjct: 229 EYLKRKEEAMERDHRKIGTELDLF--FFSKYSPGSCFFLPNGAIMYNTLIEFLREEYRKR 286

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P +    LW ESG   +Y + M  +           P +      +F+    S
Sbjct: 287 GFKEVITPNIFCTKLWEESGHLQNYKENMFLIE---GDNFALKPMNCPGHCVMFKHQDHS 343

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           +R+LP       +  R+EL     G+ R R F   DA+ F    +               
Sbjct: 344 FRDLPLRLADFGVLHRNELSGTLTGLTRVRRFQQDDAHIFCTRDQVKGE-IKGCLEFLSF 402

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   G                   +F ++  T   +   S D  +          D+  
Sbjct: 403 VYGVFG------------------FKFELVLSTRPEKYLGSIDEWNNAEKVLAEAMDESG 444

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D+    L D+L    + +   ++    F    ++       ++
Sbjct: 445 MSFKINEGDGAFYGPKIDI---TLHDALGRKIQCATIQLD----FQLPQRF----ELKYR 493

Query: 304 GADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            +DG     V +    +G++  + A+I  S   K   W          +  I   +    
Sbjct: 494 DSDGQCKTPVIIHRAILGSIERMIAIILESFGKKLPFW-----ISPRQIAIINMGN---L 545

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  EKI + LSK   DV  DD G  +  +   A+  G+ L  +VG K     ++ I+   
Sbjct: 546 DYVEKIKSVLSKFRLDV-IDD-GNTMNKRIRTAETCGYSLVCVVGEKEAKTDEINIRLSK 603

Query: 423 TGI 425
           +G 
Sbjct: 604 SGK 606


>gi|268610123|ref|ZP_06143850.1| prolyl-tRNA synthetase [Ruminococcus flavefaciens FD-1]
          Length = 480

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 155/412 (37%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  I+      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMVIRPYGYAIWENIQRILDTTFKETGHENVCMPMFIPESLLQKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                ++ +  +   PT E +  + + + I SYR+LP  + Q     R E   R   +RS
Sbjct: 99  THGGNEKLEDRLCVRPTSETLFCEHYSNIIHSYRDLPKLYNQWVSVVRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E +     +M   Y                               
Sbjct: 158 REFLWQEGHTIHATAEEAIEETERMLNVY------------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC K      +  + T+ D             + YA  + +H+        
Sbjct: 187 -------ADFCEKSLAMPVVKGKKTESDKFA-------GAVSTYAIEALMHD-------- 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G   YFG  ++      +   + K       S+G+   R++ AVI + 
Sbjct: 225 ------GKALQAGTSHYFGDGFAKAFGIEYTDKENKRVNPHQTSWGV-TTRLIGAVIMTH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P +VAP ++ ++ I  H +   D   ++  RL K G  V  DD     G +F
Sbjct: 278 GDNSGLVLPPAVAPVQVVIVPIAQHKEGVLDKANELLERLKKAGVRVKLDDTDNSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  ++ G PL+V +G + + ++K  I  R  G + D SL+E+ +  + +   
Sbjct: 338 AEYEMKGVPLRVEIGPRDIEENKCIIASRWNGEKADFSLDELESAVAQKLQE 389


>gi|262197934|ref|YP_003269143.1| threonyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
 gi|262081281|gb|ACY17250.1| threonyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
          Length = 628

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/479 (15%), Positives = 140/479 (29%), Gaps = 81/479 (16%)

Query: 8   LPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG- 65
           L  L+E  R D  +    L L          G+  +LP G + L  +   + +  N +G 
Sbjct: 180 LRRLEEAKRRDHRVLGRDLKLF-NFPELAGPGLPFYLPHGARMLQELKDWMWK-LNISGD 237

Query: 66  -------AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA--------------- 103
                     +S P +     W  SG   +Y   M  +   ++                 
Sbjct: 238 YGHPDKVYEPVSTPHILKTTAWSISGHLQNYRDNMFLVYSLDELDEGLLKPQEAAEAKEQ 297

Query: 104 ---------------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-F 147
                              P +      +++   KSYR++P  F++    +R E      
Sbjct: 298 AEAEADAAKELGLGNYGLKPMNCPGHIMMYKVGNKSYRDMPVRFFEFGTVYRYERTGTLH 357

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G++R R F   DA+ F    +                             ++        
Sbjct: 358 GLLRVRSFTQDDAHLFCTAEQLPDELAGA-------------FDFCCFVLDTL-----GF 399

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHNEK 266
             ++ L   GE  +  S +  +    +     +        + E   A Y    D     
Sbjct: 400 DYYVALKTRGENTI-GSDENWNLAEKALRDILEARAPGKYFVEEGDAAFYGPKVDFI--- 455

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVV 325
           + D L    +     ++    F    ++       F   + +      +     G+    
Sbjct: 456 IRDCLGREWQGGTVQLD----FNLPERFD----LEFVDENNQRQRPVMIHRAVFGSFERF 507

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +     +  G  +P   AP ++ ++ I        D    + A L K G  V  DD  
Sbjct: 508 FGL---MVEEFGGAFPLWCAPVQVRVLPI---SDPYLDYARTVVAALRKQGLRVELDDGR 561

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS-LEEVINYASHRFS 443
           + +G +         P  V+VG    +D+ V ++    G   ++   + +I        
Sbjct: 562 DTLGKKIRNGKTQKVPYLVVVGENEATDNTVTVESYFDGRLGEVKTTDALIERMRDEID 620


>gi|153816280|ref|ZP_01968948.1| hypothetical protein RUMTOR_02529 [Ruminococcus torques ATCC 27756]
 gi|317502163|ref|ZP_07960339.1| proline-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088732|ref|ZP_08337642.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145846463|gb|EDK23381.1| hypothetical protein RUMTOR_02529 [Ruminococcus torques ATCC 27756]
 gi|316896439|gb|EFV18534.1| proline-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330407255|gb|EGG86758.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 480

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 151/412 (36%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  ++LP G    +N+ + + +    TG   + +P L    L   E    + +  E+  +
Sbjct: 39  GCLNYLPNGYAIWENIQSDLDKRFKDTGVENVYLPVLIPESLLQKEKDHIEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +   +     PT E +  D++   ++SYR+LP  + Q     R E   R  + RS
Sbjct: 99  THGGAEPLQERFCIRPTSETLFCDVWSKTVQSYRDLPKVWNQWCSVLRWEKTTRPFL-RS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E                                            
Sbjct: 158 REFLWQEGHTIHATYE-------------------------------------------- 173

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             +  E      K + DF    EN     +    +  E++     A      E L     
Sbjct: 174 --EAEERTKLMWKVYKDFVE--ENLAIPVVAGRKTESEKFA---GAQDTYTIEALMH--- 223

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++     +FG  +       +   + + H V   S+G+ + R++ A+I   
Sbjct: 224 -----DGQALQSATSHFFGNSFPDAFDIKYADKNNELHSVYETSWGL-STRIIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP +  +I I  H +   D   ++   L+K G     DD  +  G +F
Sbjct: 278 GDDSGLVLPPRIAPVQTRVIPIAQHKEGVLDKANELLDALNKAGYRAKIDDSEKSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  ++LG P ++ +G K + + +V +  R T  +  ++++E+          
Sbjct: 338 SEQEMLGIPTRIEIGPKDIENGQVVVVRRDTREKIVVAIDEITTKLGEILET 389


>gi|19074578|ref|NP_586084.1| THREONYL tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
 gi|74697534|sp|Q8SRH2|SYTC_ENCCU RecName: Full=Probable threonyl-tRNA synthetase, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19069220|emb|CAD25688.1| THREONYL tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
          Length = 640

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 154/439 (35%), Gaps = 49/439 (11%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L   +E   RD      +L L      ++S G   +LP G    + +   +REE  + G
Sbjct: 230 YLKRKEEAKERDHRKIGTELDLF--FFSKYSPGSCFFLPNGTTMYNTLIEFLREEYRKRG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ESG   +Y + M  +           P +      +FR    S+
Sbjct: 288 FKEVITPNIFCTQLWEESGHLQNYKENMFIIE---GDTFALKPMNCPGHCVMFRHQDHSF 344

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP       +  R+EL     G+ R R F   DA+ F  T +  K            +
Sbjct: 345 RDLPLRLADFGVLHRNELSGTLTGLTRVRRFQQDDAHIFC-TKDQVKEEIKGCLEFLSFV 403

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G                    F ++  T   +   S D  D    +     D+   
Sbjct: 404 YGVFG------------------FRFELVLSTRPEKYLGSVDEWDRAEKALADAMDESNM 445

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I     A Y    D+    L D+L    + +   ++    F    ++       ++ 
Sbjct: 446 PFKINAGDGAFYGPKIDI---TLHDALGRRIQCATIQLD----FQLPQRF----ELKYRD 494

Query: 305 ADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           +DG     V +    +G++  + A+I  S   +   W          +  +   +    D
Sbjct: 495 SDGQCRTPVIIHRAILGSIERMIAIILESFGKRLPFW-----ISPRQIAIVNMGNP---D 546

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRL 422
              K+ + L++   DV  DD G  +  +   A+  G+ L  +VG K    +++ I+ ++ 
Sbjct: 547 YVGKVRSVLARFRLDV-IDD-GNTLSKRIRTAETSGYALVCVVGKKEAEANEINIRFNKS 604

Query: 423 TGIREDMSLEEVINYASHR 441
                   L ++++  +  
Sbjct: 605 NRNIGLYELRDILDRMADE 623


>gi|261328034|emb|CBH11011.1| threonyl-tRNA synthetase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 799

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 83/528 (15%), Positives = 164/528 (31%), Gaps = 106/528 (20%)

Query: 11  LQENPRDAEIAS-HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            +   RD      H+ +      H+ S G   WLP G +  + +    R++  R G  E+
Sbjct: 285 EEAARRDHRTIGRHQQL---FHFHEASPGNAFWLPHGARIYNTLIEFQRKQYRRRGFEEV 341

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + S+ LW+ SG +D Y   M  L +   +     P +      +F     SYR LP
Sbjct: 342 VSPNMFSSRLWMVSGHWDKYADNMF-LINVEKEDHGMKPMNCPGHCLMFAMQPHSYRELP 400

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             +    +  R+EL     G+ R R F   DA+ F    +     ++ +   +L+  + +
Sbjct: 401 IRYADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRMDQVKDEIHSALI--FLKDVYDV 458

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP--------------- 233
                 ++  + P     S E    A++       S   +   +P               
Sbjct: 459 LGFKFFLKHSTRPENKLGSDEMWDEAESYLQAALNSFCGIPDELPDPFNKGSTFVYDGRK 518

Query: 234 ------------------SENTDFDDIISLNSIVEQW------TAPYAATSDVHNEKLFD 269
                              EN+  DD+    +  + W       A Y    D+    + D
Sbjct: 519 ESVKKLRAMLKKRGDKKNDENSPADDVWPGPTHEDAWEENTGDGAFYGPKIDI---VVED 575

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG------------------------- 304
           +L    + +   ++      FG KY+LP +A                             
Sbjct: 576 ALRRRHQCATIQLDFNLPKRFGLKYTLPSNAAGDDGPAPKATECHKDPNAELKADKPEGK 635

Query: 305 -------------------------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
                                       +   V +     G++    A++    +  G  
Sbjct: 636 VETAAGAPKSSYEKAAHELNIDQRLDANQARPVMIHRAIFGSLERCIAIL---CEHYGGD 692

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  ++P ++ ++ +   +       + +       G     D+    +  +   A+L  
Sbjct: 693 WPFWLSPRQVIVVPVSLENA---AYAQTVRDTFFAAGFFADVDNGTATLEKKIRNAELAR 749

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +   ++VG        V ++ R        +L+E + +         P
Sbjct: 750 YNFILVVGQAEQEGQSVNVRTRDNRRHGTKTLDEALQWLRELADKYDP 797


>gi|72388976|ref|XP_844783.1| threonyl-tRNA synthetase [Trypanosoma brucei TREU927]
 gi|62176044|gb|AAX70165.1| threonyl-tRNA synthetase, putative [Trypanosoma brucei]
 gi|70801317|gb|AAZ11224.1| threonyl-tRNA synthetase, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 799

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 83/528 (15%), Positives = 164/528 (31%), Gaps = 106/528 (20%)

Query: 11  LQENPRDAEIAS-HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            +   RD      H+ +      H+ S G   WLP G +  + +    R++  R G  E+
Sbjct: 285 EEAARRDHRTIGRHQQL---FHFHEASPGNAFWLPHGARIYNTLIEFQRKQYRRRGFEEV 341

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + S+ LW+ SG +D Y   M  L +   +     P +      +F     SYR LP
Sbjct: 342 VSPNMFSSRLWMVSGHWDKYADNMF-LINVEKEDHGMKPMNCPGHCLMFAMQPHSYRELP 400

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             +    +  R+EL     G+ R R F   DA+ F    +     ++ +   +L+  + +
Sbjct: 401 IRYADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRMDQVKDEIHSALI--FLKDVYDV 458

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP--------------- 233
                 ++  + P     S E    A++       S   +   +P               
Sbjct: 459 LGFKFFLKHSTRPENKLGSDEMWDEAESYLQAALNSFCGIPDELPDPFNKGSTFVYDGRK 518

Query: 234 ------------------SENTDFDDIISLNSIVEQW------TAPYAATSDVHNEKLFD 269
                              EN+  DD+    +  + W       A Y    D+    + D
Sbjct: 519 ESVKKLRAMLKKRGDKKNDENSPADDVWPGPTHEDAWEENTGDGAFYGPKIDI---VVED 575

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG------------------------- 304
           +L    + +   ++      FG KY+LP +A                             
Sbjct: 576 ALRRRHQCATIQLDFNLPKRFGLKYTLPSNAAGDDGPAPKATECHKDPNAELKADKPEGK 635

Query: 305 -------------------------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
                                       +   V +     G++    A++    +  G  
Sbjct: 636 VEAAAGAPKSSYEKAAHELNIDQRLDANQARPVMIHRAIFGSLERCIAIL---CEHYGGD 692

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           WP  ++P ++ ++ +   +       + +       G     D+    +  +   A+L  
Sbjct: 693 WPFWLSPRQVIVVPVSLENA---AYAQTVRDTFFAAGFFADVDNGTATLEKKIRNAELAR 749

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +   ++VG        V ++ R        +L+E + +         P
Sbjct: 750 YNFILVVGQAEQEGQSVNVRTRDNRRHGTKTLDEALQWLRELADKYDP 797


>gi|47220916|emb|CAG03123.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 822

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 72/482 (14%), Positives = 145/482 (30%), Gaps = 84/482 (17%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSW---------LPL----GQKALDNVNAII 57
            +   RD         L     H  S G              P     G  +L ++   +
Sbjct: 370 EEAKKRDHRKIGKDQELF--FFHDLSPGSCFLPCPEERTSTTPWRSSSGLVSLTHIVCTM 427

Query: 58  --------------------------------REEQNRTGAIEMSVPTLQSADLWVESGR 85
                                           +EE  R G  E++ P + +  LW  SG 
Sbjct: 428 AAWPTPACPSSGSLGPEVWPAGCGVADGVWLFQEEYWRRGFQEVATPNIYNRKLWETSGH 487

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           +  YG  M       D      P +      +F    +S+R LP       +  R+EL  
Sbjct: 488 WQHYGHNMFSFPVEEDV-FALKPMNCPGHCLVFSQRPRSWRELPLRLADFGVLHRNELSG 546

Query: 146 R-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              G+ R R F   DA+ F    +               ++   G               
Sbjct: 547 TLTGLTRVRRFQQDDAHIFCTVEQIESEM-KGCLDFLRCVYKVFGFS------------- 592

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                F +   T   +        +       +  +       +     A Y    D+  
Sbjct: 593 -----FQLHLSTRPEKFLGDIAVWNQAEKQLESSLNQFGEPWKLNPGDGAFYGPKIDI-- 645

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
            K+ D++    + +   ++    F    +++L          G+   V +    +G++  
Sbjct: 646 -KIQDAIGRYHQCATVQLD----FQLPLRFNLTFVGKDGDDRGQP--VIIHRAVLGSVER 698

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-D 383
           + A++    +     WP  ++P ++ ++ +      C D   K+  + ++ G     D D
Sbjct: 699 MVAILT---ENYAGKWPLWLSPRQVMVVPVNP---ACEDYARKVCKQFTEAGLMADVDLD 752

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G  +  +   A L  +   ++VG K    + V ++ R   +  ++   EV+   +    
Sbjct: 753 SGCLLNRKIRNAQLAQYNFILVVGEKEKMTNSVNVRTRDNKVHGELPAAEVLARLTLLKQ 812

Query: 444 NN 445
           + 
Sbjct: 813 SR 814


>gi|145640808|ref|ZP_01796390.1| prolyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|145274322|gb|EDK14186.1| prolyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
          Length = 430

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 4/208 (1%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPM 298
           D     ++  +         D+ N    D  P+ K      RGIEVGHIF  G KYS  M
Sbjct: 222 DGKHYFNVNWERDVAMPEVFDLRNVVEGDRSPDGKGTLQIKRGIEVGHIFQLGKKYSEAM 281

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA- 356
            AT +G DGK   + MG YGIG  RVVA+ IE  HD +  I   D +APF ++++ +   
Sbjct: 282 KATVQGEDGKPLVMTMGCYGIGVTRVVASAIEQHHDDRGIIWPSDEIAPFTVAIVPMNMH 341

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  +   E++Y  L   G DV +DD  E+ G  FA  +L+G P  VI+G K + + ++
Sbjct: 342 KSESVQKYAEELYRTLQSQGVDVIFDDRKERPGVMFADMELIGVPHMVIIGEKNLDNGEI 401

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E K+R TG +E +S +++++  + +  N
Sbjct: 402 EYKNRRTGEKEMISKDQLLSVLNEKLGN 429



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 105/286 (36%), Gaps = 39/286 (13%)

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           +RPRFGVMRSREF+MKDAYSF  T E  + +Y+ M+  Y  IF+RLGL    ++A++G I
Sbjct: 1   MRPRFGVMRSREFIMKDAYSFHTTQESLQETYDVMYQVYSNIFNRLGLDFRAVQADTGSI 60

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE------------------NTDFDDIIS 244
           GG  SHEF VLA +GE  V       DF    E                    D  +  +
Sbjct: 61  GGSASHEFQVLASSGEDDVVF-STESDFAANIELAEAVAIGERQAPTAEMCLVDTPNAKT 119

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +  +VEQ+  P   T      K  D       +  RG    +         +     F  
Sbjct: 120 IAELVEQFNLPIEKTVKTLIVKGADENQPLVALIIRGDHELNEIKAQKHPLVADPLEFAD 179

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                  +  G   +GA+ +    I          +            N+     V    
Sbjct: 180 ETEIKAEIGAGVGSLGAVNLNIPAIIDRTVTLMSDFSCGANIDGKHYFNVNWERDVAMPE 239

Query: 365 CEKIYA------------RLS-KVGCDV--FWDDMGEQIGSQFAVA 395
              +               L  K G +V   +     Q+G +++ A
Sbjct: 240 VFDLRNVVEGDRSPDGKGTLQIKRGIEVGHIF-----QLGKKYSEA 280


>gi|256394768|ref|YP_003116332.1| threonyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256360994|gb|ACU74491.1| threonyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 409

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 143/442 (32%), Gaps = 43/442 (9%)

Query: 13  ENPRDAEIASHKLMLRTG--MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           E   D      +L L     +I     G+  WLP G      V   IR  + R G   + 
Sbjct: 3   EIQHDHRRLGRELGLFDTDPLI---GAGLPYWLPDGAVVRHAVEEYIRSVERRAGYQHVY 59

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P L   +L+  SG +  Y ++M    D   + M+  P+       I+RS   SYR LP 
Sbjct: 60  SPVLGKRELYEISGHWSHYSEDMFPPMDLGAEQMVLRPSLCPTHALIYRSRAHSYRELPL 119

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
              +I   FR E+    G +     +  +      T E                +  LG+
Sbjct: 120 RMAEIGGMFRSEMSGALGGLTRVRAITLNDAHIFCTLEQVAQEAQDALKLIRDAYEALGI 179

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           ++  +R      GG                                   D         E
Sbjct: 180 EAARIRLSLPGPGGK---------------YVDKPQMWQRATAMLREVLDASGLAYEEAE 224

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+   ++ D       +S   I+      F        +  + GADG  H
Sbjct: 225 GEAAFYGPKIDI---QIADPAGRESTLSTVQIDFHQPEQF--------ALEYIGADGARH 273

Query: 311 YV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +    +G+M  V A      +  G  +P  +AP +++++ +   +     A    +
Sbjct: 274 RPVMVHRSIVGSMERVVA---HLIEQHGGAFPAWLAPVQVAVLPVGEDEAG---AARAFH 327

Query: 370 ARLSKVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
                +G      D   G  +G++   A L   P Q ++G +  +   V I+ R     E
Sbjct: 328 DLCLDLGLRSELMDPERG-SLGARIREARL--VPYQAVIGGREAAADAVAIRLRDGRKLE 384

Query: 428 DMSLEEVINYASHRFSNNRPVL 449
            MS+ E       R +    VL
Sbjct: 385 PMSVAEAGKRMVERVAARGKVL 406


>gi|66809829|ref|XP_638638.1| prolyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|60467254|gb|EAL65287.1| prolyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 548

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 140/427 (32%), Gaps = 69/427 (16%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGR 85
           R+ MI  +   G Y   P      + + A    E  +        P L S   L  E   
Sbjct: 66  RSEMIDYYDISGCYILRPWAYSIWEQIQAFFDAEIKKLDVQNAYFPLLVSEKALTTEKDH 125

Query: 86  YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +    D  +       PT E +M   + + I+S+R+LP    Q     R 
Sbjct: 126 IEGFAPEVAWVTKSGDSQLADPVAIRPTSETIMYPAYANWIRSHRDLPLKLNQWVNVVRW 185

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +RSREFL ++ ++     E +      +   Y R++                
Sbjct: 186 EFKRPVPFLRSREFLWQEGHTAFANKEEADEEVFTILDLYRRVYE--------------- 230

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                                            E      +  + S  E++      T  
Sbjct: 231 ---------------------------------ELLCVPVVKGVKSEKEKFAGGLYTT-- 255

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                +   +P N     RGI+       G  +S   +  F+   G        S+G+  
Sbjct: 256 ----TIEGFIPTNG----RGIQAATSHALGQNFSKMFNIEFENDKGTKSLAWQNSWGL-T 306

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCD 378
            R +  ++    D KG++ P  ++P +  +I +   D          ++I  +L   G  
Sbjct: 307 TRTIGVMVMVHGDDKGLVLPPRISPIQAVVIPLHFKDSDTTAVDSKAKEIADQLKAAGIR 366

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V  D+      G ++   +L G P+++ +G K V+   V    R T  +  + +  ++  
Sbjct: 367 VNLDNRPNYNPGHKYNHWELKGVPIRIEIGPKDVASGTVICCRRDTAEKSKVEISNIVTG 426

Query: 438 ASHRFSN 444
                 N
Sbjct: 427 VKELLDN 433


>gi|241818170|ref|XP_002416554.1| tRNA synthetases class II, putative [Ixodes scapularis]
 gi|215511018|gb|EEC20471.1| tRNA synthetases class II, putative [Ixodes scapularis]
          Length = 410

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 110/426 (25%), Positives = 186/426 (43%), Gaps = 38/426 (8%)

Query: 24  KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           +LML  G+I     G +  LPL  K+L+ +  +I  E    G  ++ +P L    L+ ++
Sbjct: 1   QLMLDYGLISPSGTGTFVLLPLATKSLERLVDLIDSELQSVGGQKILLPCLVPGSLFKKT 60

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN--LPFTFYQIQLKFRD 141
           G+++  G E+ +L DR D     GPTHEE ++ +  S             +         
Sbjct: 61  GKWEDMGDELFKLKDRRDHDYCLGPTHEEAVSQLLASLPSLSLRCLPILLYQVRGRLSHY 120

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                 G + +   L  D YSFD + E +  +Y+ +  +Y RI  RLG+  + ++A SG 
Sbjct: 121 RRCMAPGFVATCGTLFADMYSFDRSAESAAETYDIVCTAYSRILERLGVPFVKVKASSGA 180

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           +GG+ SHEF  L++ GE ++F                                    ++D
Sbjct: 181 MGGNYSHEFHFLSNIGEDRLFVCPKC---------------------------HIGVSAD 213

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               +  D          RG+EV H F  GT YS P+ A+F  +DGK+  + M  +GIG 
Sbjct: 214 KTENQPCDQCS-TPLEEERGVEVAHAFSLGTVYSDPLKASFMDSDGKNKALVMNCFGIGV 272

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---HDQVCRDACEKIYARLSKVGC- 377
            R++AA +E       + WP ++APFK++++  KA    ++V       + + LS     
Sbjct: 273 TRLLAASLEVLSTQSQLRWPLAIAPFKVAVVTPKARSHEEEVGLPLSLHLTSCLSSQDIL 332

Query: 378 --DVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEE 433
             DV  DD     IG +    D +G P  V+ G +        E+     G   +++  E
Sbjct: 333 AGDVLLDDRDSWTIGKRLKDLDHMGVPFVVVAGKRSAEAMPLFELHDVYRGSVTEVTQSE 392

Query: 434 VINYAS 439
           ++++  
Sbjct: 393 LLHFFQ 398


>gi|308805817|ref|XP_003080220.1| putative threonyl-tRNA synthetase (ISS) [Ostreococcus tauri]
 gi|116058680|emb|CAL54387.1| putative threonyl-tRNA synthetase (ISS) [Ostreococcus tauri]
          Length = 673

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/447 (14%), Positives = 143/447 (31%), Gaps = 62/447 (13%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  +Y   I +   RD       L       HQ S G   +   G +  +++   I+E+
Sbjct: 277 MK--EYVTRIEEAKKRDHRTIG--LNQELFFFHQLSPGSCFFQKYGARIYNSLVGYIKEK 332

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  PTL                           +     P +      +F  
Sbjct: 333 YWEYEYDEVITPTL----------HL-----------TCRKEEFGLKPMNCPGHCVMFAH 371

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+E      G+ R R F   DA+ F    +  +      F+
Sbjct: 372 RHRSFRELPMRVADFGVLHRNEFSGALSGLTRVRRFQQDDAHIFCREDQMEQE--LLGFL 429

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            +L   + +      M+  + P G     E                   D    +     
Sbjct: 430 RFLDDVYTVFGLEYEMKLSTRPEGYLGELE-----------------VWDKAEAALTAAL 472

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +       +     A Y    D+    +FD+L    + +   ++    F    ++     
Sbjct: 473 NRSGRDWKLNPGDGAFYGPKIDI---TVFDALKRRFQCATVQLD----FQLPIRFD---- 521

Query: 300 ATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            ++   + +     +     +G++  +  ++    +     WP  ++P ++ ++ I   D
Sbjct: 522 LSYVDENNEPTRPIIIHRAILGSVERMFGILT---EHFAGKWPFWLSPKQVMIVPI--SD 576

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               + C ++   L K G  V  D+   ++  +   A L  F   ++ G     +  V +
Sbjct: 577 SASGEYCMEVKRMLRKEGFHVEVDNSDRKMQKKVREAQLEQFNYILVCGESEKVNRTVNV 636

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R   +  +  +E++I   +   S  
Sbjct: 637 RTRDNKVHGEHKVEDLITVLNKERSTR 663


>gi|254171909|ref|ZP_04878585.1| prolyl-tRNA synthetase [Thermococcus sp. AM4]
 gi|214033805|gb|EEB74631.1| prolyl-tRNA synthetase [Thermococcus sp. AM4]
          Length = 483

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 83/429 (19%), Positives = 154/429 (35%), Gaps = 69/429 (16%)

Query: 24  KLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLW 80
           +L+   G+I +     G+  WLP G K + N+ A IR E  RTG  E+  P L    +  
Sbjct: 19  ELLETAGIIDKRYPVKGMNVWLPYGLKIMRNIEAFIRAEMERTGHEEVLFPALIPETEFQ 78

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E+     +  E+  +     D  D  +I  PT E  M  +F   I+S+ +LPF  YQI 
Sbjct: 79  KEAEHIKGFEDEVYWVTHAGLDPLDVRLILRPTSETAMYSMFSLWIRSHADLPFKVYQIV 138

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             +R E +                      P       ++ F                  
Sbjct: 139 NVYRYETK-------------------HTRPLIRVREISRFFE----------------- 162

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                     +H      +  E Q+    +  D         +  I       +   A Y
Sbjct: 163 ----------AHTAHADFEDAERQIKEDLEIFDRLAKFLALPYI-ISKRPDWDKFPGAFY 211

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           +  +++                 R +++G +  +   ++   +  ++   G   Y    +
Sbjct: 212 SLGAEIMMPD------------GRTLQIGTMHNYKQNFAKAYNIQYETETGDHEYAHQTT 259

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR--DACEKIYARLSK 374
           +G+ + R++AAVI    D  G++ P ++AP ++ ++ I   D          +I   L K
Sbjct: 260 FGM-SERLLAAVIAVHGDDSGMVLPPTIAPIQVVIVPIPKKDANVDVFAYAREIAEELRK 318

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V  D+   + G ++   +L G PL++ VG + V   K  +  R T  +  +  + +
Sbjct: 319 AGFRVHVDERDIRPGRKYYDWELKGVPLRIEVGPRDVEGRKAVLARRDTFEKVTVERDAI 378

Query: 435 INYASHRFS 443
           +        
Sbjct: 379 VEEVKKTLD 387


>gi|325261340|ref|ZP_08128078.1| proline--tRNA ligase [Clostridium sp. D5]
 gi|324032794|gb|EGB94071.1| proline--tRNA ligase [Clostridium sp. D5]
          Length = 480

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 153/412 (37%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  ++LP G    +N+ + + +    TG   + +P L    L   ES   + +  E+  +
Sbjct: 39  GCLNYLPNGYAIWENIQSDLDKRFKDTGVENVYLPVLIPEALLQKESDHIEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +R  +     PT E +  D++   ++SYR+LP  + Q     R E   R   +RS
Sbjct: 99  THGGLERLQERFCIRPTSETLFCDLWSKTVQSYRDLPKVWNQWCSVLRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++                                 D+  +FI 
Sbjct: 158 REFLWQEGHTIHATYEEAEQRTLT--------------------------MRDVYRDFIQ 191

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                           D  IP  +    +        + +T                   
Sbjct: 192 D---------------DLAIPLLSGRKTESEKFAGAQDTYTV------------------ 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++     +FG+ +       +   + + H V   S+G+ + R++ A+I   
Sbjct: 219 EALMHDGKALQSATSHFFGSSFPDAFDIKYADKNNELHSVYETSWGL-STRIIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP +  +I I  H +   D   ++   L   G     DD  +  G +F
Sbjct: 278 GDDSGLVLPPRIAPVQTRVIPIAQHKEGVLDKANELLDVLKAAGYKAKIDDSEKSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  ++LG P ++ +G K + +++V +  R T  +  +S++E+          
Sbjct: 338 SEQEMLGIPTRIEIGPKDIENNQVVVVRRDTREKIVVSIDEITTKLGEILET 389


>gi|18313148|ref|NP_559815.1| prolyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
 gi|74580888|sp|Q8ZVQ9|SYP_PYRAE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|18160660|gb|AAL63997.1| prolyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
          Length = 488

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 93/421 (22%), Positives = 165/421 (39%), Gaps = 69/421 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYG 90
           +    KG Y W P G K   NV  +IR+  + TG  E+  P     + +  ES     + 
Sbjct: 35  VRYPVKGAYVWRPYGMKIRRNVENLIRKFHDETGHEEVLFPVFIPYEFFGKESQHIKGFE 94

Query: 91  KEMLRLAD--RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           KE+  ++      + ++  PT E  +  + +  I+ Y++LP   YQI   FR E +    
Sbjct: 95  KEVFWVSKGGEAGERLVLRPTSETAIMPMVKLWIQDYKDLPLRVYQIVSVFRAETKMTHP 154

Query: 149 VMRSREFLM-KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           ++R RE  M K+A++     E ++    +    Y RIF  + L  +  +           
Sbjct: 155 MIRLREISMFKEAHTVHADKEDAERQVREAVEIYKRIFDEMCLAYLINK----------- 203

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                            +   D    +E T   D I                        
Sbjct: 204 -----------------RPEWDKFAGAEYTIAFDTI------------------------ 222

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              LP+      R +++G + Y GT ++     T+  ADG        SYGI + R +AA
Sbjct: 223 ---LPDG-----RSLQIGTVHYLGTNFTKVFEVTYLDADGTRKLAHTTSYGI-SERSIAA 273

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDM 384
           ++ +  D  G   P  +AP ++ +I I   ++          +   RL++ G  V+ D+ 
Sbjct: 274 MLITHGDDGGTTLPPKLAPIQVVVIPIYYGEEEAPLVMPLVRETANRLNEAGIRVYVDER 333

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             +  G +F   +L G PL+V +G + V   +  I  R T  +  +S+ E+++       
Sbjct: 334 ADKTPGWKFYYWELKGVPLRVEIGKRDVEKRQAVIARRDTLEKYAVSINELVDAVKQLMK 393

Query: 444 N 444
           +
Sbjct: 394 S 394


>gi|223041833|ref|ZP_03612022.1| prolyl-tRNA synthetase [Actinobacillus minor 202]
 gi|223017360|gb|EEF15782.1| prolyl-tRNA synthetase [Actinobacillus minor 202]
          Length = 263

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 71/187 (37%), Positives = 106/187 (56%), Gaps = 4/187 (2%)

Query: 261 DVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+ N    D  P+ K V    RGIEVGHIF  GTKYS  M AT +G DGK   + MG YG
Sbjct: 76  DLRNVVEGDPSPDGKGVLQIKRGIEVGHIFQLGTKYSEAMKATVQGEDGKPLIMTMGCYG 135

Query: 319 IGAMRVVAAVIESSHDGK-GIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVG 376
           IG  RVVAA IE  HD +  I   D +APF ++++ +     +  +   E++Y  L   G
Sbjct: 136 IGVTRVVAAAIEQHHDERGIIWPSDEIAPFTVAIVPMNMHKSEKVQAFAEELYKTLKAQG 195

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV +DD  E+ G  FA  +L+G P  V++G K + + ++E K+R TG ++ ++ E+++ 
Sbjct: 196 VDVIFDDRKERPGVMFADMELIGVPHMVVIGEKNLENGEIEYKNRRTGEKQMIAKEQLLA 255

Query: 437 YASHRFS 443
           + +    
Sbjct: 256 FLAENVK 262


>gi|291522045|emb|CBK80338.1| prolyl-tRNA synthetase, family I [Coprococcus catus GD/7]
          Length = 477

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 90/428 (21%), Positives = 160/428 (37%), Gaps = 72/428 (16%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESG 84
           ++ G+I   S KG  +  P G    +N+   + +    TG   + +P      L   E  
Sbjct: 27  VKAGLIGYTSVKGCMAIKPAGYAIWENIQHELDKRFKATGVENVYMPMFIPESLLQKEKD 86

Query: 85  RYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E+  +           M   PT E +  D +   I+SYR+LP  + Q     R
Sbjct: 87  HVEGFAPEVAWVTHGGLNELQERMCVRPTSETLFCDFYAKEIQSYRDLPKMYNQWCSVVR 146

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E   R   +RSREFL ++ ++   T E SK    +M   Y                   
Sbjct: 147 WEKETRP-FLRSREFLWQEGHTAHATAEESKERTEQMLNLY------------------- 186

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                        AD  E  +                    I    +  E++    A  +
Sbjct: 187 -------------ADFCEQVLA----------------MPVIRGQKTEKEKFAGAEATYT 217

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                       E      + ++ G    FG  ++      +   + K  YV   S+G+ 
Sbjct: 218 -----------IEALMHDGKALQSGTSHNFGDGFARAFGIQYTDKENKLQYVHQTSWGM- 265

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R++ A+I    D  G++ P  +AP ++ +I I  H +   +  E++  RLS  G  V 
Sbjct: 266 TTRLIGAIIMVHGDDNGLVLPPMIAPTQVIVIPIAQHKEGVLEKAEELRDRLS--GFRVK 323

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---INY 437
            D    + G +FA A++ G P++V +G K +  ++  +  R TG +  +SL+E+   ++ 
Sbjct: 324 LDATDNKPGWKFAEAEMRGIPVRVEIGPKDIEANQAVLARRDTGEKIVVSLDELETKVDE 383

Query: 438 ASHRFSNN 445
                 +N
Sbjct: 384 LLKEIQSN 391


>gi|313677792|ref|YP_004055788.1| prolyl-tRNA synthetase [Marivirga tractuosa DSM 4126]
 gi|312944490|gb|ADR23680.1| prolyl-tRNA synthetase [Marivirga tractuosa DSM 4126]
          Length = 491

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 157/429 (36%), Gaps = 84/429 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   + +    TG      P       L  E+   + + KE   +
Sbjct: 33  GCMIIKPYGFSIWEKMQRELDDMFKETGHQNAYFPLFIPKSYLSKEADHVEGFAKECAVV 92

Query: 97  AD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                               + ++ +I  PT E ++ + +R+ ++SYR+LP    Q    
Sbjct: 93  THYRLKNDENGKGIVVDPDAKLEEELIVRPTSETIIWNTYRNWVQSYRDLPLLINQWANV 152

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E+R R   +R+ EFL ++ ++   T + +     +M   Y                 
Sbjct: 153 VRWEMRTRL-FLRTAEFLWQEGHTAHATKQEAIEETERMINIY----------------- 194

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                 D + EF+                              I  L S  E++      
Sbjct: 195 -----ADFAEEFMA--------------------------LPVIKGLKSESERFAG---- 219

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                   L     E      + ++ G   + G  ++      F   +GK  +V   S+G
Sbjct: 220 -------ALETYCIEGLMQDGKALQAGTSHFLGQNFAKAFDVKFATKEGKQEFVWGTSWG 272

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKV 375
           + + R++ A++ +  D +G++ P  +AP ++ ++ I   D+  +   +  E +   L K 
Sbjct: 273 V-STRLMGALVMAHSDDEGLVLPPRLAPIQVVIVPIYKTDEEQQKITEVAENLRKSLKKK 331

Query: 376 GCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              V +DD    + G +FA  +L G PL++ +G + + +  VE+  R T  ++ +S+E +
Sbjct: 332 RITVKFDDRDTHKPGFKFAEWELKGVPLRIAIGPRDLDNGTVELARRDTKEKQTVSIEGI 391

Query: 435 INYASHRFS 443
            +       
Sbjct: 392 ESVIEDTLE 400


>gi|158319516|ref|YP_001512023.1| prolyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
 gi|166980096|sp|A8MLB3|SYP_ALKOO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|158139715|gb|ABW18027.1| prolyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 480

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 70/417 (16%), Positives = 154/417 (36%), Gaps = 71/417 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    +N+   + +    TG      P L    L   E+   + +  E+  +
Sbjct: 40  GFMVIKPYGYAIWENIQNYMDKRFKETGHKNCYFPLLIPESLLKKEAEHVEGFAPEVAWV 99

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               ++ +       PT E ++ +++   + SYR+LPF + Q     R E   R  + R+
Sbjct: 100 THGGNEELAERLCVRPTSETIICEMYSKWLTSYRDLPFLYNQWCSVVRWEKSTRPFL-RT 158

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M   Y                               
Sbjct: 159 SEFLWQEGHTLHETYEEAQAETLQMLNIYR------------------------------ 188

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             +T E  +                    +I   S  E++   YA  +            
Sbjct: 189 --ETAENLLA----------------MPVVIGQKSEKEKFAGAYATYTM----------- 219

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G     G  ++     T+   +G+  +    S+G+ + R++  +I   
Sbjct: 220 EALMHDGKALQAGTSHNLGQHFTTAFDITYSDRNGELKHPYHTSWGV-STRLIGGIIMVH 278

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQ 391
            D +G++ P  +AP ++ ++ + +H +   D   ++  RL      V  DD      G +
Sbjct: 279 GDNRGLVLPPGIAPTQVVIVPVASHKEGVLDKANELRDRLKDK-FRVELDDRDNYSPGWK 337

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---INYASHRFSNN 445
           F   ++ G P+++ +G + + +++  +  R    ++ +SL+++   +       +NN
Sbjct: 338 FNEWEMKGVPIRIEIGPRDIENNQAMLFRRDELEKDAVSLDDLEEAVEKLLEDINNN 394


>gi|58700004|ref|ZP_00374566.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533480|gb|EAL57917.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 342

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 129/379 (34%), Gaps = 39/379 (10%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           + L    I + + G   W   G    + + + IR++    G  E+  P L S +LW +SG
Sbjct: 1   MDLF--HIQEEAVGQVFWHEQGYILYNVLESYIRKKLINNGYFEVKTPILVSKELWEKSG 58

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
            +D + + M  + +   K +   P +      IF SH +SYR+LP    +     R+E  
Sbjct: 59  HWDKFRENMFIVDESESKKLAIKPMNCPCHVQIFNSHTRSYRDLPIRMAEFGTCHRNESS 118

Query: 145 PR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G+MR R F   DA+ F +  + +  +          ++  LG   I ++    P  
Sbjct: 119 GSLHGLMRVRGFTQDDAHIFCMEEQVNSETIKF-CDLLKEVYSELGFNEISVKFSDRPDV 177

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                E                   D    +      +      +     A Y    +  
Sbjct: 178 RAGDDE-----------------VWDRAEKALLEAVKEAGLSYELSPGEGAFYGPKLEF- 219

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAM 322
              L D++  + +     ++       G        A + GADG  H+   +    +G  
Sbjct: 220 --VLKDAIGRSWQCGTLQVDFILPERLG--------AFYIGADGHKHHPVMLHRAILGTF 269

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++  ++ GK  +W        +++ N             KI   L + G  V  D
Sbjct: 270 ERFIGILIENYAGKFPVWLAPTQLAILTITN------EADGYATKISNVLKEQGVRVKTD 323

Query: 383 DMGEQIGSQFAVADLLGFP 401
              E+I  +  +  L   P
Sbjct: 324 LTNEKISYKIRLHSLNKVP 342


>gi|302389804|ref|YP_003825625.1| prolyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
 gi|302200432|gb|ADL08002.1| prolyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
          Length = 479

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 145/413 (35%), Gaps = 68/413 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    +N+  ++      TG      P      L   E+   + +  E+  +
Sbjct: 37  GCMVIRPYGYAIWENMQKLLDRRFKETGHKNAYFPLFIPESLLKKEAEHVEGFAPEVAWV 96

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E ++  ++   IKS+R+LP    Q     R E       +R+
Sbjct: 97  THGGQEELAERIAVRPTSETIICSMYSKWIKSWRDLPVLINQWCSVVRWEKS-TKPFLRT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M                                   
Sbjct: 156 AEFLWQEGHTAHRTEEDAEEETLRML---------------------------------- 181

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                  +++      +  +P        +    S  E++              L     
Sbjct: 182 -------EIYRDFVETELAVPV-------VKGRKSENEKFAG-----------ALRTYTI 216

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G     G  +S     TF   DGK  YV   S+G+ + R++ A+I + 
Sbjct: 217 EAMMGDGKALQAGTSHNLGQHFSKVFDITFLDQDGKLKYVWQTSWGV-STRLIGAIIMTH 275

Query: 333 HDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGS 390
            D +G+  P  VAP ++ ++ I     +   +    +Y  L      V  DD  E   G 
Sbjct: 276 GDDRGLKLPPRVAPIQVVIVPIFGQQKEEILEKSRSLYQTLKNNNFRVELDDRDEYTPGW 335

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +F   ++ G P+++ +G K ++ ++V +  R TG +  +   ++I Y +    
Sbjct: 336 KFNEWEMKGVPVRLEIGPKDLAQNQVLLVRRDTGEKISVKEADLIPYLTDLLE 388


>gi|291548182|emb|CBL21290.1| prolyl-tRNA synthetase, family I [Ruminococcus sp. SR1/5]
          Length = 479

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 144/412 (34%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  +  P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMAIKPAGYAIWENIQHELDRRFKETGVENVYMPIFIPESLLDKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D   + +   PT E +  D ++  I+S+R+LP  + Q     R E   R   +RS
Sbjct: 99  THGGLDPLQERLCVRPTSETLFCDFYQKEIQSHRDLPKVYNQWCSVVRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++    +M                        I  D   E + 
Sbjct: 158 REFLWQEGHTAHATAEEAEQRTIQMLN----------------------IYADFCEEVLA 195

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        I    +  E++    A  +            
Sbjct: 196 --------------------------IPVIKGQKTDKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FG  ++      +   D    YV   S+G+   R++ A+I   
Sbjct: 219 ESLMHDGKALQSGTSHNFGDGFAKAFGIQYTDKDNTLKYVHQTSWGM-TTRMIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP +  +I I+   +   +  +++ A L   G     D   +  G +F
Sbjct: 278 GDNSGLVLPPRIAPVQTVIIPIQQRKEGVMEKADELLAALKAAGIRAKVDATDKSPGFKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  ++ G PL+V  G K + + +  +  R T  +  +S EE+ +        
Sbjct: 338 AEQEMRGIPLRVECGPKDIENGQAVLCRRDTREKYTVSFEELADKVKELLDT 389


>gi|71019463|ref|XP_759962.1| hypothetical protein UM03815.1 [Ustilago maydis 521]
 gi|46099508|gb|EAK84741.1| hypothetical protein UM03815.1 [Ustilago maydis 521]
          Length = 536

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 78/463 (16%), Positives = 142/463 (30%), Gaps = 88/463 (19%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D         L      + S G    LP G +    V  ++R+  +  G  E+  P L  
Sbjct: 65  DHRSIGKAQTLFLTH--ESSPGTPFILPHGMRLARKVERVVRDLYDVYGYDEVQSPQLYK 122

Query: 77  ADLWVESGRYDSYGKEML--------------------------------RLADRNDKAM 104
             LW  SG +D+Y  +M                                   A+  D++ 
Sbjct: 123 TSLWKRSGHWDNYRDDMFAAEGYKERFSSSIDDRRTSCCSIHPPTSATEATAANAEDESF 182

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSF 163
              P +      IF S  +SYR+LP  + +     R+E      G+ R R F   DA+ F
Sbjct: 183 GLKPMNCPGHCLIFGSSERSYRDLPIRYAEFSPLHRNEASGALTGLTRVRRFHQDDAHVF 242

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
               + +    N M       +   G     +   + P     S E              
Sbjct: 243 CRPDQVAVE-INSMLSMLTSAYDTFGFSDFELVLSTRPESFIGSVE-------------- 287

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                D          D       +     A Y    D+H   L D      + +   ++
Sbjct: 288 ---EWDRAEAGLRQALDASGRKWEMNAGDGAFYGPKIDIH---LVDGQGRRHQTATIQLD 341

Query: 284 VGHIFYFGTKYSL---PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
               F    ++ L     +A       +   V +    +G++    A++    +     W
Sbjct: 342 ----FQLPRRFDLSYADPAAKQTNE--RSVPVMIHRAILGSVERFMAILI---EQTAGWW 392

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-------------------DVFW 381
           P  ++P +  +I    ++    +  EK++  L  +G                    DV  
Sbjct: 393 PFWLSPRQAIIIPATTNNPALTEYVEKLHKFL-SLGIHPDAPPSSSSERHLQRFFVDVES 451

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +   E++G     A L  +   ++VG K +  + + ++ R   
Sbjct: 452 NPQNEKLGKLVRKAQLARYNYILVVGEKEMHTNTINVRKRDDK 494


>gi|229083697|ref|ZP_04216020.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-44]
 gi|228699626|gb|EEL52288.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-44]
          Length = 476

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 79/412 (19%), Positives = 151/412 (36%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   +G   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENIQKVMDEKLKASGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R   +R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP-FLRT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQEETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + TD +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTDKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +   +    +  R+ KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVIIVPIAQHKEGVLEKAAGLQERIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++    +   + 
Sbjct: 335 NEYEMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKEFVSMDQLEERITSLLNE 386


>gi|284031321|ref|YP_003381252.1| threonyl-tRNA synthetase [Kribbella flavida DSM 17836]
 gi|283810614|gb|ADB32453.1| threonyl-tRNA synthetase [Kribbella flavida DSM 17836]
          Length = 417

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 137/413 (33%), Gaps = 38/413 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           D      +L L     +I     G+   LP G      + + + E + R+G   +  P L
Sbjct: 3   DHRKLGRELGLFDSDPLI---GAGLPYLLPAGAAIRQALESYVAELERRSGYQHVYSPVL 59

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
              +L+  SG +  Y  +M       ++ ++  P+       I+RS   SYR LP  + +
Sbjct: 60  GKRELYELSGHWSHYSDDMYPPMKVGEEEVVLRPSLCPHHALIYRSRAHSYRELPVRYAE 119

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +   +R EL    G +     +  +      T +             LR +  LGL+   
Sbjct: 120 LGGMYRSELSGVLGGLTRVRAIQLNDGHIFCTLDQVADEARAALDLILRAYGDLGLRPAR 179

Query: 195 MRAESGPIGGDLSHEFIVLADTGET--QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                              A  G+   +     +  D          D+           
Sbjct: 180 FLLSLPA----------ADARIGDPASKYVGDAESWDRSAALLREVLDEAGVQYEEAPGE 229

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    DV   ++ D+      +S   I+      F           + GADG  H  
Sbjct: 230 AAFYGPKIDV---QIADAAGRESTLSTIQIDFHQPARF--------ELDYIGADGNKHRP 278

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    IG++  V A +   H G    W   +AP ++ ++ I   ++       +I  R
Sbjct: 279 VMVHRAIIGSLERVIAQLIELHGGALPGW---LAPVQLVVLPISDAEE---KYAAEITRR 332

Query: 372 LSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               G         E  +G++     L   P Q ++G++ +   ++ ++ R  
Sbjct: 333 AVDRGLRAELAHADEGTLGARIRENRL--VPYQAVIGARELEAGQLAVRDRSG 383


>gi|207092740|ref|ZP_03240527.1| prolyl-tRNA synthetase [Helicobacter pylori HPKX_438_AG0C1]
          Length = 204

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 90/204 (44%), Positives = 120/204 (58%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  SK F P L+E P+DA + SHK + + G I+Q   GIY++LPL +K LD +  I  + 
Sbjct: 1   MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFLPLAKKVLDKIENITHKR 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR D   +  PT EE +T+I  +
Sbjct: 61  MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKDNDFVLSPTLEENITEIAAN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 121 FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGG 204
           Y  I   LGL    + A+SG IGG
Sbjct: 181 YKEILSDLGLDFRIVEADSGAIGG 204


>gi|116179548|ref|XP_001219623.1| hypothetical protein CHGG_00402 [Chaetomium globosum CBS 148.51]
 gi|88184699|gb|EAQ92167.1| hypothetical protein CHGG_00402 [Chaetomium globosum CBS 148.51]
          Length = 716

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 77/483 (15%), Positives = 153/483 (31%), Gaps = 88/483 (18%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD  +   +  L      + S G   WLP G +  + +   IREE  +    E+
Sbjct: 258 LEEAAKRDHRLIGKQQELF--YFEESSPGSAMWLPHGMRINNAIMDYIREEYWKRDYDEV 315

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + +  LW +SG    Y ++M  L D + +     P +              ++ LP
Sbjct: 316 MTPNMFNVSLWEQSGHLAHYKEDMF-LLDVDKEQFGLKPMNCPG-----------HKELP 363

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                  +  R+E      G+ R R F   DA+ F    +  K     +F      +  L
Sbjct: 364 LRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCR-EDQIKEEVADLFDFMSSFYGML 422

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           GL    ++  + P   D     I   D+ E ++   +   +F   +E   ++        
Sbjct: 423 GLTF-KLKLSTRP---DKFMGEISTWDSAEARL--KEALNEFAAANEGVTWELNA----- 471

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATFKGA- 305
                A Y    D+       ++    + +   ++      F    + +  +    K A 
Sbjct: 472 --GDGAFYGPKVDI-------AVLRQWQCATIQLDFQQPINFSLEYQTAESVQKDKKDAA 522

Query: 306 ---------------------------------------DGKDHYVQMGSYGIGAMRVVA 326
                                                   G    V +     G++    
Sbjct: 523 PAPAPAPAPVPAPVPDGTAEEKKDGREKKKPLLVKKPLAPGCARPVMIHRAMAGSIERFT 582

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A++    +     WP  ++P ++ +I +           +++ A L K    V  D  G 
Sbjct: 583 AILA---EHFAGKWPYWMSPRQVIVIPVGMG---FLGYAKEVAALLKKERFHVDVDSSGN 636

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASHRF 442
            +  +     L  +    +VG   + + KV I++R     +     + LE+ I       
Sbjct: 637 TLQKKIRNGQLAQYNFCFVVGDDEMRNRKVNIRYRDDTSTQARDVPVDLEDAIEKLRKLK 696

Query: 443 SNN 445
           ++ 
Sbjct: 697 ADR 699


>gi|72547539|ref|XP_843247.1| threonyl-tRNA synthetase [Leishmania major strain Friedlin]
 gi|323363762|emb|CBZ12768.1| putative threonyl-tRNA synthetase [Leishmania major strain
           Friedlin]
          Length = 787

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 81/511 (15%), Positives = 162/511 (31%), Gaps = 92/511 (18%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD  +   +  L     H+ S G   WLP G +  + +   +R++  R G  E+ 
Sbjct: 281 EEAAKRDHRVIGRQQNLFN--FHEVSPGSAFWLPHGARIYNTLVEFLRKKYRRCGFQEVI 338

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + S+ LW+ SG ++ Y   M        +     P +      +F S   SY+ LP 
Sbjct: 339 SPNMYSSKLWMVSGHWEKYADSMF-CTKCEKEDFGLKPMNCPGHCIMFASQPHSYKELPI 397

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHS---------------Y 174
            +    +  R+EL     G+ R R F   DA+ F    + +                  +
Sbjct: 398 RYADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRMDQITDEMEGQMQFLSDVYGVLGF 457

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESG---------------PIGGDLSHEFIVLADTGET 219
              F    R  ++LG  ++  ++ES                P        F         
Sbjct: 458 KFYFYHSTRPANKLGSDALWDQSESYLRTALNRFCGIPEELPDPLHPDQRFHYDGKPDSV 517

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVE--QWTAPYAATSDVHNEKLFDSLPENKRV 277
           +   +           N         +  +E     A Y    D+    + D+L    + 
Sbjct: 518 KKMKALMKKAERSEDPNAWKGPTNGGDGWIENVGDGAFYGPKIDI---VVEDALRRRHQC 574

Query: 278 SARGIEVGHIFYFGTKYSLP---------------------------------------- 297
           +   ++      FG KY+LP                                        
Sbjct: 575 ATIQLDFNLPSRFGLKYTLPAAEKDETTVGPTEKQRHADPAPTASSPAVAEGESKPKPGK 634

Query: 298 MSATFKG-------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             A  +           +   V +    +G++    A++    +  G  WP  ++P ++ 
Sbjct: 635 YEAAVRDLGIDLELDANQARPVMIHRAILGSLERSIAIL---CEHFGGDWPFWLSPRQVM 691

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ + A +    +  +++   +   G  V  D+    +  +   A+   +   ++VG + 
Sbjct: 692 VVPVSASN---YEYSQQVRDTIHDAGFHVDVDNGAATLDKKIRNAEKARYNFILVVGQQE 748

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              + V I+ R      + SL E + +    
Sbjct: 749 QDATGVSIRARGEKRLGNKSLVEAVQWFKEL 779


>gi|171185819|ref|YP_001794738.1| prolyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
 gi|259511627|sp|B1Y963|SYP_THENV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|170935031|gb|ACB40292.1| prolyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
          Length = 487

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 94/420 (22%), Positives = 164/420 (39%), Gaps = 69/420 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYG 90
           +    KG Y W P G K   NV  +IR   + TG  E+  P     + +  ES     + 
Sbjct: 34  VRYPVKGAYVWRPYGMKLRRNVEELIRRVHDETGHEEVLFPVFIPYEFFGKESQHIRGFE 93

Query: 91  KEMLRLAD--RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           KE+  ++      + ++  PT E  +  + +  I+ Y++LP   YQI   FR E +    
Sbjct: 94  KEVFWVSKGGEGGERLVLRPTSETAIMPMVKLWIQDYKDLPLRLYQIVSVFRAETKMTHP 153

Query: 149 VMRSREFLM-KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           ++R RE  M K+A++  +  E ++    +    Y RIF  + L  +  +           
Sbjct: 154 MIRLREISMFKEAHTVHVDREDAERQVREAVEIYKRIFDEMCLAYMINK----------- 202

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                            +   D    +E T   D +                        
Sbjct: 203 -----------------RPDWDKFAGAEYTIAFDTV------------------------ 221

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              LP+      R +++G   Y GT ++     T+  ADG        SYGI + R +AA
Sbjct: 222 ---LPDG-----RTLQIGTAHYLGTNFTRVFEVTYLDADGTRKLAHTTSYGI-SERSIAA 272

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDD- 383
           ++ +  D  G   P  +AP +I+++ I   D+         E++ A L   G  +  DD 
Sbjct: 273 MLITHGDDGGTTLPPKLAPIQIAVVPIYYSDEEMPLVMKFVEEVVAALKGAGLRLHVDDR 332

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             +  G +F   +L G PL++ VG + V   +V +  R T  +  ++L E+++       
Sbjct: 333 RDKTPGWKFYYWELKGVPLRLEVGKRDVEKRQVVVTRRDTLEKYAVALGELVDAVRELMK 392


>gi|164659836|ref|XP_001731042.1| hypothetical protein MGL_2041 [Malassezia globosa CBS 7966]
 gi|159104940|gb|EDP43828.1| hypothetical protein MGL_2041 [Malassezia globosa CBS 7966]
          Length = 815

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 76/462 (16%), Positives = 137/462 (29%), Gaps = 65/462 (14%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y   + +    D         L     H  S G    +P G + L  V  +IR+  +  
Sbjct: 311 QYSARMSELEKSDHRHLGIAQGLF--FAHDSSPGSPFVMPHGMRLLRKVERVIRDLYDTF 368

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEM-----LRLADRNDKAMIYGPTHEEVMTDIFR 119
           G  E+  P L  + LW +SG ++ Y ++M           +D      P +      +F 
Sbjct: 369 GYDEVQTPQLFRSSLWKQSGHWEKYREDMFSAQGFSCCGAHDDVFGLKPMNCPGHCVMFA 428

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +SYR LP    +     R+E      G+ R R F   DA+ F    + +    + + 
Sbjct: 429 HQPRSYRELPMRLAEFSPLHRNEASGALSGLTRVRRFHQDDAHVFCTPAQVATEIESMLH 488

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +  L            +   + P       E                   D    S    
Sbjct: 489 MLSLAYRVFGFGDRFELVLSTRPPNFLGQVE-----------------AWDHAEASLKEA 531

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--SL 296
            D      ++ E   A Y    D+    L D++    + +   ++      FG +Y  S 
Sbjct: 532 LDASGKPWTLNEGDGAFYGPKIDIR---LVDAMGRKHQTATIQLDFQLPERFGLEYATSS 588

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG-KGIIWPDSVAPFKISLINIK 355
            + +T +   G    V +    +G+     A++     G          A    +    +
Sbjct: 589 QVPSTEQVRPGYARPVMIHRAILGSFERFLAILVEQCKGWWPFWLSPRQAVVIPAFSGNE 648

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDM------------------------------- 384
              Q   D    +   LS    +   +                                 
Sbjct: 649 ETHQAVADYAAHVQYTLSGHTHETR-ETRSPFLSPTMAHQTLQVPSRTRFQIELPPQSLV 707

Query: 385 --GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             G+ +G +   A L  F   +IVG +   +  V ++ R   
Sbjct: 708 PAGDTLGKKVRHAQLSRFNFFLIVGPQEAKNRTVSVRMRDEK 749


>gi|325678420|ref|ZP_08158040.1| proline--tRNA ligase [Ruminococcus albus 8]
 gi|324109921|gb|EGC04117.1| proline--tRNA ligase [Ruminococcus albus 8]
          Length = 480

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 151/415 (36%), Gaps = 66/415 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +++  I+       G   + +P      L   E    + +  E+  +
Sbjct: 39  GCMVIRPYGYAIWEHIQRILDTRFKELGHENVCMPMFIPESLLQKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                ++ +  +   PT E +  + + + + SYR+LP  + Q     R E   R   +RS
Sbjct: 99  THGGSEKLEDRLCVRPTSETLFCEHYANIVHSYRDLPKLYNQWVSVVRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E +     +M   Y     +                         
Sbjct: 158 REFLWQEGHTIHETAEEAIEETERMLNCYADFCEK------------------------- 192

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             +     V   K   D    +E T                  YA  + +H+        
Sbjct: 193 --ELAMPVVKGRKTDSDKFAGAEAT------------------YAIEALMHD-------- 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G   YFG  ++      F G D K  Y    S+G+   R++ A+I + 
Sbjct: 225 ------GKALQAGTSHYFGDGFARAFDIQFTGRDNKLSYPHQTSWGV-TTRLIGAIIMTH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P +VAP +  ++ I+   +   +  +++  +L   G  V  DD  +  G +F
Sbjct: 278 GDDNGLVLPPAVAPIQAVIVPIQQFKEGVLEKAQEVCEQLKAAGIRVKVDDSEQSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           A  ++ G P+++ +G K + + +  I  R    +    L E++   + +    R 
Sbjct: 338 AEYEMKGVPVRIELGPKDIENGQCVIVTRHDREKTFTPLTELVETVNAKLEAVRE 392


>gi|13508292|ref|NP_110242.1| threonyl-tRNA synthetase [Mycoplasma pneumoniae M129]
 gi|2501059|sp|P75225|SYT_MYCPN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|1673960|gb|AAB95937.1| threonyl-tRNA synthetase [Mycoplasma pneumoniae M129]
 gi|301633413|gb|ADK86967.1| threonine--tRNA ligase [Mycoplasma pneumoniae FH]
          Length = 564

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 141/427 (33%), Gaps = 34/427 (7%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      +L + T        G   WL  G      +   +  +Q   G   +S P L +
Sbjct: 167 DHRAIGKRLEIFT-FDPLVGAGFPIWLEKGAVLKKIIGDFVHYQQLMFGFKTVSSPVLAN 225

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            +L+  SG Y  Y ++M       ++ M+  P        IF+   +SY+ LP  F +  
Sbjct: 226 LELYKISGHYVHYSEDMFPSVKLENQMMMLRPMTCPHHCLIFKHKRRSYKELPQRFCEDS 285

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           +  R E      G+ R R   + D + F  T +         F     + ++ G     +
Sbjct: 286 ILHRFEASGGLTGLERVRCMTLLDNHIFCRTDQIKAE-IKNAFKLIQTVNNKFGFSFDRI 344

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISLNSIVEQWTA 254
                            L D      F   D +     S+  + F ++     I     A
Sbjct: 345 DL--------------ALHDPNNKAKFIDNDQLWANSESQIESVFKELNVPYKIDVGAAA 390

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
            Y    D    +   +L +   ++   ++    F    ++ L     F         V +
Sbjct: 391 FYGPKIDF---QFKTALNKMITIATIQLD----FLLPERFELRY---FDEQSNAQTPVII 440

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               +G      A +     G   +W  +     +  +NI  H+     A +K+Y +L K
Sbjct: 441 HVGIVGTYERFIAALLEKTHGNLPLW-MAPVQVVVIPVNIDKHE----KAAKKLYQKLLK 495

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEE 433
               V  D+  +++G +   A +   PLQ+IVG K + D   +  +       + +    
Sbjct: 496 ENIRVSLDESEDRLGKKVRTAIVNKIPLQIIVGDKEMQDLTRITCRGFKGEKVQKLYWAN 555

Query: 434 VINYASH 440
            +     
Sbjct: 556 FVKKVRK 562


>gi|303244992|ref|ZP_07331315.1| prolyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
 gi|302484644|gb|EFL47585.1| prolyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
          Length = 471

 Score =  176 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 94/451 (20%), Positives = 175/451 (38%), Gaps = 84/451 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++  IL+     AEI   +  ++         G   +LP G K       IIR   +
Sbjct: 8   FSEWYGNILER----AEIYDLRYPIK---------GCGVYLPYGFKIRKYAFEIIRNMLD 54

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG  E   P L   DL   E      +  E+  +        D  +   PT E  +  +
Sbjct: 55  ETGHDEALFPMLIPEDLLAKEGEHIKGFEDEVYWVTHGGKTPLDVKLALRPTSETPIYYM 114

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            +  IK + +LP   YQ+   FR E +    ++R RE                       
Sbjct: 115 MKLWIKVHTDLPIKVYQVVNTFRYETKHTRPLIRLREI---------------------- 152

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                   +    +H      +  E QV          I     
Sbjct: 153 ------------------------MTFKEAHTAHATKEDAENQV-------KEAINIYKN 181

Query: 238 DFDDII--SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
            FD++   ++ S   +W     A   +  + +F   P+ K      +++G +   G  ++
Sbjct: 182 FFDELGIPTIISKRPEWDKFPGAEYTMAFDTIF---PDGK-----TMQIGTVHNLGQNFA 233

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI- 354
                 F+ ADG   Y     YGI + RV+A++I    D KG+I P +VAP +I +I + 
Sbjct: 234 KTFELEFETADGGKDYAYQTCYGI-SDRVIASIIALHGDEKGLILPPNVAPIQIVIIPLL 292

Query: 355 -KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
            K  +++  +  E++Y  L + G  V  DD   + G +F   +L G P+++ +G + + +
Sbjct: 293 FKGKEEIAMNKAEEVYNTLKEKGFRVKLDDRDIRPGRKFNDWELKGAPIRIELGPRDIEN 352

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            K+ +  R TG +  ++ +++++  ++  ++
Sbjct: 353 KKITLFRRDTGEKFQINEDDLLDGINNTMNS 383


>gi|330791323|ref|XP_003283743.1| prolyl-tRNA synthetase [Dictyostelium purpureum]
 gi|325086366|gb|EGC39757.1| prolyl-tRNA synthetase [Dictyostelium purpureum]
          Length = 530

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 138/427 (32%), Gaps = 69/427 (16%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGR 85
           R+ MI  +   G Y   P      + + A    E  +        P L S   L  E   
Sbjct: 48  RSEMIDYYDISGCYILRPWAYSIWEQIQAFFDSEIKKLDVQNAYFPLLVSEKALTTEKDH 107

Query: 86  YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +       +       PT E +M   + + I+S+R+LP    Q     R 
Sbjct: 108 IEGFAPEVAWVTKSGGSDLADPVAIRPTSETIMYPAYANWIRSHRDLPLKLNQWVNVVRW 167

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +RSREFL ++ ++     E +      +   Y R++                
Sbjct: 168 EFKRPVPFLRSREFLWQEGHTAFANKEEADQEVYTILDLYRRVYE--------------- 212

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                                            E      +  + S  E++      T  
Sbjct: 213 ---------------------------------ELLCVPVVKGVKSEKEKFAGGLYTT-- 237

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                +   +P N     RGI+       G  +S   +  F+   G        S+G+  
Sbjct: 238 ----TIEGFIPTNG----RGIQAATSHCLGQNFSKMFNIEFENDKGGKSLAWQNSWGL-T 288

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCD 378
            R +  +I    D KG++ P  +AP +  +I +   D          ++I   L   G  
Sbjct: 289 TRTIGVMIMLHGDDKGLVLPPRIAPIQAVVIPLHFKDADTTAVDTKAKEIADSLKAAGIR 348

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V  D+      G ++   +L G P+++ +G K V+   V    R T  +  + +  ++N 
Sbjct: 349 VNLDNRPNYNPGHKYNHWELKGVPIRIEIGPKDVASGSVICCRRDTAEKSKVEISNIVNG 408

Query: 438 ASHRFSN 444
                  
Sbjct: 409 VKELLDT 415


>gi|293376513|ref|ZP_06622741.1| proline--tRNA ligase [Turicibacter sanguinis PC909]
 gi|292644739|gb|EFF62821.1| proline--tRNA ligase [Turicibacter sanguinis PC909]
          Length = 476

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/417 (18%), Positives = 155/417 (37%), Gaps = 67/417 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   + ++   TG   + +P L    L   E+   + +  E+  +
Sbjct: 37  GCMIIRPYGYAIWENIQQYLDQKFKETGHENVYMPMLIPESLLQKEADHVEGFAPEVAWV 96

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               ++ +       PT E +  D +   I+SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGNEKLSERLVVRPTSETLFCDHYSKIIQSYNDLPKKYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++     M  +Y                        +  EF+ 
Sbjct: 156 TEFLWQEGHTVHATAEEAEEETLLMLNTY----------------------AKMCEEFLA 193

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        +    +  E++    A  +            
Sbjct: 194 --------------------------IPVLKGQKTEKEKFAGAQATYT-----------I 216

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FGT ++      +   + K  Y    S+G+   R++ A+I   
Sbjct: 217 ESLMHDGKALQSGTSHNFGTGFAKAFDIKYSDKNSKMQYAHQTSWGV-TTRLIGAIIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ +I I AH +   +   ++  RL+ V   V  D   +  G +F
Sbjct: 276 GDSSGLVLPPRVAPTQVMIIPIAAHKEGVIEKACELQTRLASV-ARVKCDTSDKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  ++ G P++V +G K + +++V +  R T  +  +SL+++         + +  L
Sbjct: 335 SEYEMKGIPVRVEIGPKDIENNQVVLVRRDTREKIIVSLDDLETKVVELLEDIQQSL 391


>gi|331003535|ref|ZP_08327032.1| prolyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330412376|gb|EGG91767.1| prolyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 479

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 89/412 (21%), Positives = 151/412 (36%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   I      TG     +P      L   E+   + +  E+  +
Sbjct: 39  GCLVIRPAGYAIWENMKNEIDRRFKETGIENCYLPMFIPESLLQKEADHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +  ++ +   PT E +  D +   +KSYR+LP    Q     R E   R   +RS
Sbjct: 99  THGGLEELEERLCVRPTSETLFCDYYSKVVKSYRDLPQLLNQWCSVVRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T + +     +M   Y   F +                         
Sbjct: 158 REFLWQEGHTIHATAKEAHDRTVQMLEVYADFFEK------------------------- 192

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                           D  IP       D        E++    A  +            
Sbjct: 193 ----------------DLAIPVVRGMKTDK-------EKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   YFG  ++     TF   D +   V   S+G+   R++ AVI   
Sbjct: 219 EALMHDGKALQSGTSHYFGDGFAKAFDVTFTDKDNQIKTVFETSFGV-TTRIIGAVIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+  P  +AP ++++I + AH +   +A   +  RL   G  V  DD  +  G +F
Sbjct: 278 GDDSGLKLPPHIAPVQVNIIPVAAHKEGVLEAANDLKNRLIAAGVRVKLDDSEKSPGFKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A +++ G PL++ +G K + +++     R TG +  +SLE V N A     N
Sbjct: 338 AESEMRGIPLRIEIGPKDIENNQCVFVRRDTGEKTFVSLENVENDAKECLEN 389


>gi|145591039|ref|YP_001153041.1| prolyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
 gi|166980145|sp|A4WJ22|SYP_PYRAR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145282807|gb|ABP50389.1| prolyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
          Length = 488

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 88/421 (20%), Positives = 162/421 (38%), Gaps = 69/421 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYG 90
           +    KG Y W P G +   +V  +IR   + TG  E+  P     + +  ES     + 
Sbjct: 35  VRYPVKGAYVWRPYGMRLRRHVEELIRRSHDETGHQEVLFPVFIPYEFFGKESQHIRGFE 94

Query: 91  KEMLRLAD--RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           KE+  ++      + ++  PT E  +  + +  +  Y++LP   YQI   FR E +    
Sbjct: 95  KEVFWVSKGGEEGERLVLRPTSETAIMPMVKLWVHDYKDLPLRLYQIVSVFRAETKMTHP 154

Query: 149 VMRSREFLM-KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           ++R RE  M K+A++  +  E ++    +    Y +IF  + L  +  +           
Sbjct: 155 MIRLREISMFKEAHTVHVDREDAERQVREAVEIYKKIFDEMCLAYMINK----------- 203

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                            +   D    +E T   D +                        
Sbjct: 204 -----------------RPDWDKFAGAEYTIAFDTV------------------------ 222

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              LP+      R +++G + Y GT ++     T+  ADG        SYGI + R +AA
Sbjct: 223 ---LPDG-----RTLQIGTVHYLGTNFTRVFEVTYLAADGTRRLAHTTSYGI-SERSIAA 273

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDM 384
           ++ +  D  G + P  +AP ++ ++ I   ++          ++   L + G  V  DD 
Sbjct: 274 MLITHGDDAGTVLPPRLAPIQVVIVPIFYGEEEAASVISYAREVEKALREAGMRVHIDDR 333

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             +  G +F   +L G PL+V VG + +   +V I  R T  +  + L E+++       
Sbjct: 334 PDKTPGWKFYFWELKGVPLRVEVGKRDLEKRQVVITRRDTLEKYAVGLGELVDAVRGLMR 393

Query: 444 N 444
            
Sbjct: 394 T 394


>gi|218186121|gb|EEC68548.1| hypothetical protein OsI_36857 [Oryza sativa Indica Group]
          Length = 490

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 114/192 (59%), Gaps = 3/192 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P    +D+ N    D+ P+ +   +  RGIEVGHIF  GTKYS  M AT +G DG++  +
Sbjct: 298 PLPQVADIRNVVEGDASPDGQGTLLIKRGIEVGHIFQLGTKYSEAMKATVQGEDGRNQVL 357

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYAR 371
            MG YGIG  RVVAA IE +HD +GIIWPD++APF+++++ +  H     +   E++Y  
Sbjct: 358 TMGCYGIGVTRVVAAAIEQNHDERGIIWPDAIAPFQVAILPMNMHKSFRVQALAEELYNT 417

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G DV  DD  E+ G  FA  +L+G P  +++G + + + ++E K+R  G ++ +  
Sbjct: 418 LRSHGIDVILDDRKERPGVMFADMELIGVPHSIVIGDRNLDNEEIEYKNRRVGEKQMIKT 477

Query: 432 EEVINYASHRFS 443
            E++++   +  
Sbjct: 478 GEIVDFLLGQIK 489



 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  +    R+E
Sbjct: 1   MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKIQTKFRDE 60

Query: 61  QN-RTGAI---EMSV----PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEE 112
              R G +   E  +        S +   E+  YD+  +   ++  R             
Sbjct: 61  VRPRFGVMRSREFLMKDAYSFHTSQESLQET--YDAMYEAYSKIFSRMGLDFRPVQADTG 118

Query: 113 VMTDIFRSHIK 123
            +        +
Sbjct: 119 SIGGSASHEFQ 129



 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 53/98 (54%), Positives = 68/98 (69%), Gaps = 1/98 (1%)

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           Q KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M+ +Y +IF R+GL   P+
Sbjct: 54  QTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAMYEAYSKIFSRMGLDFRPV 113

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
           +A++G IGG  SHEF VLAD+GE  +       DF   
Sbjct: 114 QADTGSIGGSASHEFQVLADSGEDDIVF-STGSDFAAN 150


>gi|154483386|ref|ZP_02025834.1| hypothetical protein EUBVEN_01089 [Eubacterium ventriosum ATCC
           27560]
 gi|149735896|gb|EDM51782.1| hypothetical protein EUBVEN_01089 [Eubacterium ventriosum ATCC
           27560]
          Length = 579

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 92/228 (40%), Positives = 129/228 (56%), Gaps = 1/228 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK      +E P +  I SH LM+R G I   + GIYS  P  ++    +  IIR+E
Sbjct: 1   MKLSKLVGDRFKERPANCLIDSHALMVRGGYIKNVANGIYSQFPPMKRISQKIENIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P      LW ESGRY+S G E+LR  DR    M+ G THEE    + R 
Sbjct: 61  MDKLDGQEVLFPVALPGSLWEESGRYESVGSELLRFTDRTGSKMVLGMTHEEASVQLVRE 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +  SY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E  +  Y K++ +
Sbjct: 121 YANSYAKYPFMIYQIQTKFRDEARPRAGLIRVREFTMKDAYSFHTSQEDLEQYYQKVYDA 180

Query: 181 YLRIFHRLGLKSI-PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RIF R G+  +  ++++SG +GG +SHE+++L   GE  +    + 
Sbjct: 181 YSRIFARCGIPEVAIVKSDSGMMGGSISHEYMLLTPVGEDSIAICPEC 228



 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 115/217 (52%), Gaps = 1/217 (0%)

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           D+ +   N         N   +   A Y   + +    +  +  +     +RGIEVG+IF
Sbjct: 352 DYLVTGANKVDTHYTGFNVERDCPDAKYVDLAKITEGGICPNCGKPVINISRGIEVGNIF 411

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             GTKYS  M+ T+   +GK+ Y  MG YGIG  R+ A++ E  HD  G IWP ++AP++
Sbjct: 412 QLGTKYSKAMNFTYTDENGKEQYPIMGCYGIGVGRMAASICEVRHDDYGPIWPITIAPWQ 471

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + L  +++ D  C++  ++IY  L  +G +V +DD   + G+ FA ADLLG P++V+V  
Sbjct: 472 VHLCCLRSDDAECKEKADEIYETLQNMGIEVIYDDRKARPGAMFADADLLGVPVRVVVSP 531

Query: 409 KFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRFSN 444
           + ++++ VEI  R     ++   +++ +    +  + 
Sbjct: 532 RNLAENVVEISTRDKSIDKQKTPVDQAVTEVQNIINK 568


>gi|46204424|ref|ZP_00050025.2| COG0441: Threonyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 394

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 66/392 (16%), Positives = 124/392 (31%), Gaps = 37/392 (9%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            W   G      + A +R    +    E++ P +    LW  SG +  Y + M       
Sbjct: 2   FWHAQGWTVFQELIAYMRRRL-KGDYAEVNAPQILDKSLWETSGHWGWYRENMFAAQSAG 60

Query: 101 D-----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSRE 154
           +     +     P +      IF+  +KSYR+LP    +  +  R E      G+MR R 
Sbjct: 61  EEAEDKRWFALKPMNCPGHVQIFKHGLKSYRDLPLRMAEFGVVHRYEPSGAMHGLMRVRG 120

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   DA+ F    + +           L  +   G   I ++  + P     S      A
Sbjct: 121 FTQDDAHIFCTEDQLADECLKIN-DLILSTYADFGFDEILVKLSTRPEKRVGSDALWDHA 179

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +   T+V             E      I +  ++     A Y    +     L D++  +
Sbjct: 180 EAVMTRVL---------AQIEEQSGGRIKT--AVNPGEGAFYGPKFEY---VLRDAIGRD 225

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            +     ++      FG        AT+      K   V +     G+M     ++    
Sbjct: 226 WQCGTTQVDFNLPERFG--------ATYIDADSQKKPPVMVHRAICGSMERFTGILIEHF 277

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G   +W   +     ++           D   ++   L + G  V  D   E+I  +  
Sbjct: 278 AGHFPLWLAPLQIVVATIT------SEADDYAREVVRVLERAGLRVEADLRNEKINYKVR 331

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
              L   P+ + +G +   +  V ++   +  
Sbjct: 332 EHSLAKVPVLLALGRREAEERTVSVRRLGSQK 363


>gi|310829146|ref|YP_003961503.1| hypothetical protein ELI_3581 [Eubacterium limosum KIST612]
 gi|308740880|gb|ADO38540.1| hypothetical protein ELI_3581 [Eubacterium limosum KIST612]
          Length = 483

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 149/418 (35%), Gaps = 68/418 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    +N+     E    TG   M  P L    L   E+   + +  E+  +
Sbjct: 40  GFMVIRPYGYAIWENIQKAYDERFKATGHQNMYFPLLIPESLLKKEAEHVEGFAPEVAWV 99

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               DK +       PT E ++  ++   + SYR LPF + Q     R E   R   +R+
Sbjct: 100 TKGGDKELAEPLCVRPTSETIICSMYAKWLHSYRQLPFLYNQWCSVVRWEKTTRP-FLRT 158

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   TPE ++    +M                        I  +++ + + 
Sbjct: 159 SEFLWQEGHTLHETPEEAQEETMQMLN----------------------IYREVAEDIMA 196

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        ++   S  E++    A  +            
Sbjct: 197 --------------------------IPVVVGQKSEKEKFAGAAATYTM----------- 219

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G     G  ++     T+   + +  Y    S+G+ + R++  +I   
Sbjct: 220 EALMHDGQALQSGTSHNLGQHFTKAFDITYLDRNNEQAYPYHTSWGV-STRLIGGIIMVH 278

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQ 391
            D  G++ P  +AP ++ +I +  H +   D   ++   L      V  DD      G +
Sbjct: 279 GDDNGLVLPPRIAPTQLVIIPVAQHKEGVLDKAYELKDIL-GAEFRVELDDNDSNSPGWK 337

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           F   ++ G P+++ +G + + + +  +  R TG +  ++L+++     +  +  +  L
Sbjct: 338 FNQWEMKGVPIRLEIGPRDIENGQCVLARRDTGEKVQVALDDITEAVRNLLAEIQQNL 395


>gi|62184882|ref|YP_219667.1| prolyl-tRNA synthetase [Chlamydophila abortus S26/3]
 gi|81312944|sp|Q5L6M5|SYP_CHLAB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|62147949|emb|CAH63696.1| prolyl-tRNA synthetase [Chlamydophila abortus S26/3]
          Length = 577

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 90/275 (32%), Positives = 145/275 (52%), Gaps = 5/275 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F    +   ++A + S++L+ + G I + +KGIY++ PL  +    +  IIREE
Sbjct: 1   MKTSQLFYKTSKNANKEASVLSYELLEKAGYIFKTAKGIYTYTPLFWRVALKMMDIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L  A+LW ++GR++++  E  +  + DR DK     PTHEE+++   
Sbjct: 61  LNAIGGQELVLPILHPAELWQKTGRWEAFRSEGLLYTVKDREDKEFCLAPTHEEIVSMFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +   + LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE     Y K+ 
Sbjct: 121 SQWLSGRKQLPIHLYQIATKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMNEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENT 237
            +Y  IF RL ++ + + A+ G IG   S EF VL+  GE  +        +        
Sbjct: 181 QAYQNIFDRLEIQYVIVEADGGKIGKGKSEEFHVLSSLGEDTLCVSGHYGANIEAAVAQP 240

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                      +E+   P   T +  N + F S+P
Sbjct: 241 PQYTYDKDYLPIEEVDTPDVRTIE--NLQDFFSVP 273



 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/256 (25%), Positives = 107/256 (41%), Gaps = 5/256 (1%)

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
              A    I   L  E   +        F + +                    ++     
Sbjct: 318 CSLASDEEIQKHLGVEKGFIGPLNCPIDFYADETTQCMTNFICAGNVKDKHYKNVNWDRD 377

Query: 254 APYAATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            P    +D    +  D  P           G+EV HIF  GT+Y+      F+   GK  
Sbjct: 378 IPRPEYADFLLAEAGDLCPTNNHAPYEIFEGVEVAHIFNLGTRYTEGFDVVFQDEQGKPQ 437

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              MG+YGIG  R +AA IE   D +GI+WP ++APF IS++     D  C +A EKIY 
Sbjct: 438 SCWMGTYGIGIGRTLAACIEQLADDRGIVWPKAIAPFDISILY-NGGDTACEEAAEKIYK 496

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G     DD  E++G +   +DL+G P ++I+G  F++   +EI+ R +  +  + 
Sbjct: 497 ELQGYGYAPLLDDRNERLGFKLKDSDLIGIPYKLILGKTFLNSGMLEIESR-SIEKFSVE 555

Query: 431 LEEVINYASHRFSNNR 446
            ++ +++      + R
Sbjct: 556 PKDFVHWCKRHLPSPR 571


>gi|147918785|ref|YP_687490.1| prolyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
 gi|121690208|sp|Q0W0C9|SYP_UNCMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110622886|emb|CAJ38164.1| prolyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
          Length = 474

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 153/412 (37%), Gaps = 69/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRL 96
           G+Y W P G      V  ++R   +     E   P L    +L  ES     +  E+  +
Sbjct: 36  GVYVWYPFGFSIRKKVYNMLRNLLD-VDHQETYFPMLIPKPELLKESEHIKGFEDEVYWV 94

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                   +  +   PT E  +  +++  I+S+ +LP   YQI   FR E +    ++R 
Sbjct: 95  THGGLSELEVPLALRPTSETAIYPMYKLWIRSHADLPLKLYQIVNTFRYETKHTRPLIRL 154

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           RE                                                    +H    
Sbjct: 155 REITSF----------------------------------------------KEAHTAHA 168

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             D  E QV          + SE      +  +     +W     A   +  + +    P
Sbjct: 169 TWDDAEKQV-----HEAMDLYSEFFTKLAVPFIVHKRPEWDKFPGADYTMAFDTMM---P 220

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           + K      ++VG + + GTK++     T++   G+  YV    YGI + R +AAVI   
Sbjct: 221 DGK-----SLQVGTVHHLGTKFAKTYDITYEDEKGERQYVNQTCYGI-SERCIAAVIGIH 274

Query: 333 HDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            D KG++ P + +  ++ +I I  K  D   ++AC+K+   L         DD  E+ G+
Sbjct: 275 GDNKGLVLPPNASQTQVVIIPIIFKKDDGGVKEACQKVKELLRANDIVAVIDDADERPGA 334

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           ++   ++ G P ++ +G + + ++ V +  R  G +E + ++ +     ++ 
Sbjct: 335 KYYKWEMKGTPFRIEIGPRDIKNNSVMLVRRD-GKKESIPMDGLPETVRNKL 385


>gi|295698550|ref|YP_003603205.1| prolyl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
 gi|291157056|gb|ADD79501.1| prolyl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
          Length = 583

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 99/210 (47%), Positives = 142/210 (67%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+Y L  L +   ++EI S +LM+R+GMI + S GIY WLP G K ++ + +IIR+E
Sbjct: 1   MKTSQYLLSTLTDYQVNSEILSDRLMMRSGMIRKLSSGIYYWLPTGVKVIEKLKSIIRKE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G IE S P +Q   LW +SGR D YG+E+ R+ DR  +  I  PT+EE +  + + 
Sbjct: 61  MDSIGLIEFSSPLIQPMKLWKKSGRLDQYGEELFRINDRKSRPFILSPTNEESIIYLMKH 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+ LP + YQI+ KFRDELRP+FG++RS+EF+MKDAYSF    +  + +Y  M  +
Sbjct: 121 EIQSYKQLPISLYQIRTKFRDELRPQFGIIRSKEFIMKDAYSFHTNLQSLQKTYEMMLDT 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           Y RIF+R+GL    + AE+G IGG+LSHEF
Sbjct: 181 YKRIFNRIGLDFRVILAENGFIGGNLSHEF 210



 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 1/172 (0%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           +++    IE+GHIF  G KYS  M+A F+   G+   + MG YGIG  RV+AA+IE +HD
Sbjct: 405 EQIRKDEIEIGHIFQIGNKYSRAMNAFFQDERGERKLITMGCYGIGIGRVIAAIIEQNHD 464

Query: 335 GKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
             GI+WPD +APF+++++ I      + R     +Y  L K   +V +DD          
Sbjct: 465 INGIVWPDVLAPFQVAILPINMYKFNIVRKVSNDLYCDLKKNNFEVIFDDRQIGFSKMLK 524

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +L+G P  +I+  + +  + +  ++R     E + L   +++    F  N
Sbjct: 525 DIELIGVPNILIINKENLLSNNIIYRNRSNHSEEMIHLSCTLSFLKKLFIKN 576


>gi|283769476|ref|ZP_06342372.1| proline--tRNA ligase [Bulleidia extructa W1219]
 gi|283103744|gb|EFC05130.1| proline--tRNA ligase [Bulleidia extructa W1219]
          Length = 561

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 97/241 (40%), Positives = 144/241 (59%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    +   L+EN +D +  S  L++R GMI + S G+Y  LP+G K  + + +II+EE
Sbjct: 1   MRLKNSYFFTLRENAKDEDSQSSNLLVRAGMIKKSSTGVYMILPMGLKVFNKIKSIIQEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+ +P+L   +++V SGR + +G +M  L DR ++  + GPTHEE+     + 
Sbjct: 61  MEAIHCQELLMPSLIPEEVYVASGRREGFGSDMFSLKDRKNQNYVLGPTHEELFATAAKL 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+++PF+ YQIQ KFRDE RPR+G++R REF MKDAYSFD    G   SYNK F +
Sbjct: 121 KIRSYKDMPFSIYQIQTKFRDEPRPRYGLIRVREFQMKDAYSFDANEAGMDSSYNKQFQA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF RLGL  + ++A++G +GG LS EF  L+  GE  +  ++D          T   
Sbjct: 181 YKNIFDRLGLNYVVVKADTGVMGGLLSEEFQALSPVGEDTLALNEDGSYAANLEVATCLP 240

Query: 241 D 241
           +
Sbjct: 241 E 241



 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/205 (33%), Positives = 103/205 (50%), Gaps = 4/205 (1%)

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSL 296
            ++       V       +   D    +  D  P  +      +GIEVG+ F  GTKYS 
Sbjct: 358 ANEDGYHYCDVNPSDFEVSQYGDFRQIQEGDRCPSGQGFIHFEKGIEVGNTFKLGTKYSK 417

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            M   +  A+ +  YV MG YGIG  R +AA++E ++D  GI WP ++AP++ S+  I  
Sbjct: 418 AMDLQYSNANNQLEYVWMGCYGIGPARAMAALVEQNYDENGINWPKNLAPYRCSITIISM 477

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D         +Y +L K G DV  DD  E+ G +F   DL+G P Q+ VG K V D +V
Sbjct: 478 KDDQQIQVANDLYDQLRKAGIDVLLDDRDERPGVKFKDMDLIGIPTQITVG-KNVVDGQV 536

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
           EIK R    +  +S++ V++Y + +
Sbjct: 537 EIKERGHMKQ-SISIDSVLDYLTQK 560


>gi|295109529|emb|CBL23482.1| prolyl-tRNA synthetase, family I [Ruminococcus obeum A2-162]
          Length = 477

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 74/411 (18%), Positives = 142/411 (34%), Gaps = 66/411 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  +  P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMAIKPAGYAIWENIQHELDSRFKETGVQNVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                  +       PT E +  D ++  I+S+R+LP  + Q     R E   R   +RS
Sbjct: 97  THGGLNELQERLCVRPTSETLFCDFYQKDIQSHRDLPKVYNQWCSVVRWEKTTRP-FLRS 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++    +M   Y                               
Sbjct: 156 REFLWQEGHTAHATAEEAEERTIQMLNLYADFCE-------------------------- 189

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                 E      I    +  E++    A  +            
Sbjct: 190 ----------------------EVLAIPVIKGQKTDKEKFAGAVATYT-----------I 216

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FG  ++      +   D    YV   S+G+   R++ A+I   
Sbjct: 217 ESLMHDGKALQSGTSHNFGDGFAKAFGIQYTDKDNTLKYVHQTSWGM-TTRMIGAIIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP +  +I I+   +   +  ++++A L   G  V  DD     G +F
Sbjct: 276 GDNSGLVLPPRIAPTQAVIIPIQQRKEGVLEKADELFAALKAAGIRVKVDDTDRSPGFKF 335

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           A  ++ G P+++  G K + + +  I  R T  +  +S +E+ +       
Sbjct: 336 AEQEMRGIPVRIECGPKDIENGQAVICRRDTREKYVVSFDELASKVQEVLD 386


>gi|159476198|ref|XP_001696198.1| hypothetical protein CHLREDRAFT_167047 [Chlamydomonas reinhardtii]
 gi|158282423|gb|EDP08175.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 688

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/436 (14%), Positives = 130/436 (29%), Gaps = 55/436 (12%)

Query: 4   SKYF----LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           SK        + +   RD  +   +  L     H  S G   +LP G +  +N+   IRE
Sbjct: 268 SKLLKDYQHRMEEAKKRDHRVVGVQQELF--FFHPLSPGSCFFLPHGARIYNNLVGYIRE 325

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           +       E+  P + + DLW  SG  D Y + M    D   +     P +         
Sbjct: 326 KYWEYEYEEVITPNIYNFDLWKTSGHADHYRENMFSF-DIEKQEFGLKPMNCPARALHAP 384

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +        + +   L +     P    +    F      S             + F+
Sbjct: 385 DRL-----GTLSPHTTTLLYPHRPPPPPPPVPGYAFTSLVIMSVMAE--------VQGFL 431

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L   + +      M   + P G     E                   +    +     
Sbjct: 432 KLLGEVYEVFGLDCTMALSTRPEGYLGDIE-----------------LWNKAEQALTDAL 474

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +       +     A Y    D+    ++D+L    + +   ++    F    ++     
Sbjct: 475 NSTGKAWVLNPGDGAFYGPKIDI---TVYDALRRKFQCATVQLD----FQLPIRF----G 523

Query: 300 ATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
             +    G  +  V +    +G++  + A++    +     WP  + P ++ ++ I    
Sbjct: 524 LEYASEAGTLERPVIVHRAVLGSVERMFAILT---EHFAGKWPFWLNPRQVMVVPI---S 577

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   +    +   L   G     D    ++  +   A L  +   ++VG    +   V +
Sbjct: 578 ENSVEYAFTVRKELRSAGLHCDVDSTDRKMQKKVREAQLAQYNYILVVGEAEKTAQTVNV 637

Query: 419 KHRLTGIREDMSLEEV 434
           + R   +     L +V
Sbjct: 638 RTRDNVVHGMFKLSDV 653


>gi|225377425|ref|ZP_03754646.1| hypothetical protein ROSEINA2194_03073 [Roseburia inulinivorans DSM
           16841]
 gi|225210771|gb|EEG93125.1| hypothetical protein ROSEINA2194_03073 [Roseburia inulinivorans DSM
           16841]
          Length = 575

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 108/340 (31%), Positives = 166/340 (48%), Gaps = 6/340 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYS-WLPLGQKALDNVNAIIRE 59
           M+  K      +E P D ++ SH LM+R G +   + GIYS ++PL ++    +  IIRE
Sbjct: 1   MKLEKLVGDRFKERPADCQVDSHALMIRGGYMKNVANGIYSSYMPL-RRITRKIEQIIRE 59

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E +     E+  P +  A LW ESGRYDS GKE+LR  DRN   M+ G THEE    + R
Sbjct: 60  EMDAIDGQEVQFPVVMPASLWQESGRYDSIGKELLRFTDRNGAPMVLGMTHEEAAVQLVR 119

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + +SY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E  +  Y+K   
Sbjct: 120 EYGQSYAKYPFMIYQIQTKFRDEARPRAGLIRVREFTMKDAYSFHTSQEDLEQYYDKCHK 179

Query: 180 SYLRIFHRLGLKSIPM-RAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENT 237
           +Y RI+ R G+  +   +++SG +GG++SHEF++L   GE  +  C++      + +   
Sbjct: 180 AYERIYARAGIPEVVSVKSDSGMMGGNVSHEFMLLTPIGEDSIVICNECDYRANMEAAEN 239

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYS 295
             ++       + +   P   T +   E L     ++ +  V  +  +  +I  F     
Sbjct: 240 IVENETEAMQELTKVHTPEMHTIEQVCEFLHVDAKKSMKAVVYQKNSDDKYILIFVRGDL 299

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                      G D +  + +   G        +  + D 
Sbjct: 300 EINETKLTNYLGCDVHPAVITEESGIQAGFIGPVNQNADC 339



 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/215 (29%), Positives = 103/215 (47%)

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           +   N        LN   E     Y   + V    +     +     +RGIEVG+IF  G
Sbjct: 354 VCGANEVDYHYTGLNMEREFPDVEYVDLAKVVEGGICPCCGKKSLTISRGIEVGNIFQLG 413

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           TKY+  M+ T+   DG      MG YGIG  R+ A++ E+ HD  G IWP S+AP+++ +
Sbjct: 414 TKYTKTMNMTYVDKDGISKNPIMGCYGIGVGRMAASICEAHHDDYGPIWPMSIAPWQVHI 473

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
             +    +  R+  + +Y  L   G +V +DD     G++F+ ADLLG P++V+V  + +
Sbjct: 474 CAMNLDKEGVREVADTLYENLQNAGVEVIYDDRSVSAGNKFSDADLLGVPVRVVVSPRNL 533

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +S VE+  R   + E + +E    Y        +
Sbjct: 534 KESVVEVSTRDKSLMEKVPVENAEQYVKDLVEKMK 568


>gi|153812523|ref|ZP_01965191.1| hypothetical protein RUMOBE_02922 [Ruminococcus obeum ATCC 29174]
 gi|149831448|gb|EDM86536.1| hypothetical protein RUMOBE_02922 [Ruminococcus obeum ATCC 29174]
          Length = 477

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 141/412 (34%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  +  P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMAIKPAGYAIWENIQHELDRRFKETGVQNVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                  +       PT E +  D ++  I+S+R+LP  + Q     R E   R   +RS
Sbjct: 97  THGGLNELQERLCVRPTSETLFCDFYQKDIQSHRDLPKVYNQWCSVVRWEKTTRP-FLRS 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++    +M   Y                               
Sbjct: 156 REFLWQEGHTAHATAEEAEERTIQMLNLYADFCE-------------------------- 189

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                 E      I    +  E++    A  +            
Sbjct: 190 ----------------------EVLAIPVIKGQKTDKEKFAGAVATYT-----------I 216

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FG  ++      +   D    YV   S+G+   R++ A+I   
Sbjct: 217 ESLMHDGKALQSGTSHNFGDGFAKAFGIQYTDKDNTLKYVHQTSWGM-TTRMIGAIIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP +  +I I+   +   +  ++++A L   G  V  DD     G +F
Sbjct: 276 GDNSGLVLPPRIAPTQAVIIPIQQRKEGVLEKADELFAALKAAGIRVKVDDTDRSPGFKF 335

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  ++ G P+++  G K + + +  I  R T  +  +S EE+          
Sbjct: 336 AEQEMRGIPVRIECGPKDIENGQAVICRRDTREKYVVSFEELAAKVQEVLDT 387


>gi|71394075|gb|AAZ32114.1| prolyl-tRNA synthetase [uncultured euryarchaeote Alv-FOS5]
          Length = 472

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 89/454 (19%), Positives = 167/454 (36%), Gaps = 86/454 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++  +L+     AE+  ++  ++         G+  W P G K    V  ++RE   
Sbjct: 8   FSEWYQEVLES----AELVDNRYPVK---------GMLVWRPNGFKIRKYVTDLLRELLE 54

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLADRNDKAMIY----GPTHEEVMTDI 117
            TG  E+  PTL     L  E      +G E+  +    +  +       PT E  M  +
Sbjct: 55  ETGHQEVLFPTLIPETALNKEGEHIRGFGSEVYWITHGGETPLDVKLALRPTSETAMYPM 114

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF-LMKDAYSFDLTPEGSKHSYNK 176
           F   I+S+ +LP   +QI   FR E +    ++R RE    K+A+    T E ++     
Sbjct: 115 FALWIRSHADLPLRVFQIVSVFRYETKHTRPLIRVREVSTFKEAHCALKTEEEAEKEMRI 174

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +   Y   +  LG+                              V   +   D    ++ 
Sbjct: 175 IDGVYKAFWDELGIPF----------------------------VRVQRPSWDKFAGADK 206

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           T   D I                                  + R +++        K+S 
Sbjct: 207 TIAYDTIMP--------------------------------TGRTLQIATSHRLSQKFSE 234

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-- 354
                ++  +G+     + S+GI + R +AA++    D +G++ P   AP ++ ++ I  
Sbjct: 235 VFDVKYEDENGEQKLAYLTSHGI-SERAIAALVGIHGDNRGLVLPPRFAPVQVVIVPILY 293

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           K  +    +   ++Y +L      V  DD     G +F   +L G P+++ +G + V + 
Sbjct: 294 KGKENQVMEKAMEVYEKLK-YNWRVELDDSDSNPGDKFYYWELRGVPIRIEIGPRDVENG 352

Query: 415 KVEIKHRLTGIREDMSLEEV---INYASHRFSNN 445
            V +  R T  +  + +EE+   IN  +    NN
Sbjct: 353 VVTLARRDTKEKTQVKMEELEDKINRLAEEIHNN 386


>gi|295664016|ref|XP_002792560.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
 gi|226278674|gb|EEH34240.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
          Length = 559

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 145/448 (32%), Gaps = 62/448 (13%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           P L+  P D  +      L T  +  +S G   +LP G   L+ + + +R +  + G  E
Sbjct: 68  PTLR--PADHRVVGTAQDLFTTSV--YSPGSPLFLPNGTHILNKLTSFLRAQYAQYGFRE 123

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTD 116
           +  P++    LW  SG + +Y  +M  +  R             D++    P +      
Sbjct: 124 VLTPSIYKKSLWEVSGHWQNYKDDMYEVRGRGASGETAEGEIGEDESYGLKPMNCPGHCL 183

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F+S   SYR LP  +       R+E+     G+ R R F   D + F    +       
Sbjct: 184 LFKSQNHSYRELPLRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIFCRPQQIGSE-IE 242

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                   + +  G     +   + P                E     S +  D      
Sbjct: 243 SALRFTDTVMNTFGFNKYRLVLSTRP----------------ERDFIGSIELWDSAERQL 286

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTK 293
               +       + E   A Y    D+   ++ DS  +  ++S   +++     F  G  
Sbjct: 287 RDALEKNGRSWELNEGDGAFYGPKIDM---QVQDSDGKFHQLSTIQLDMNLPQRFELGYA 343

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
            +           GK   V +     G++    A++  +++G+   W        +++  
Sbjct: 344 VAEGEEDYNPATPGKAMPVLIHRAIFGSLERFFALLIENYNGRWPFWLSPRQGIILTVSQ 403

Query: 354 IKAHDQVCRDACEKIY-------ARLSKVG----------------CDVFWDDMGEQIGS 390
            +   Q   DA  KI          L+                     +  D     +G 
Sbjct: 404 DEKLVQAAEDAATKISGYPVHRNGELNSNSNSTAQPLKPISPAQTTFRIDVDTSARSLGK 463

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   A  + + L  ++G K + D  ++I
Sbjct: 464 KIREAKKMKYNLIFVLGEKNLGDGSIDI 491


>gi|258620049|ref|ZP_05715089.1| prolyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|258587782|gb|EEW12491.1| prolyl-tRNA synthetase [Vibrio mimicus VM573]
          Length = 459

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/190 (36%), Positives = 112/190 (58%), Gaps = 3/190 (1%)

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               D+ N    D     +   +  RGIEVGHIF  GT YS  M+     ++GK+  ++M
Sbjct: 270 GKVEDLRNVVEGDPSPCGKGTLMLKRGIEVGHIFQLGTNYSAKMNCGVLDSNGKNAILEM 329

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLS 373
           G YGIG  RVVAA IE +HD  GIIWPD++APF+++++ +     +  ++A EK+YA L+
Sbjct: 330 GCYGIGVSRVVAAAIEQNHDDYGIIWPDAIAPFQVAIVPMNMHKSERVQEAAEKLYAELT 389

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V +DD  E+ G  F+  +L+G P  VI+G + + +   E K+R  G +E +++E 
Sbjct: 390 AAGIEVLFDDRKERPGVMFSDMELIGVPHTVIIGDRSMDEGHFEYKNRRNGEKEAVAMES 449

Query: 434 VINYASHRFS 443
           +I++   + +
Sbjct: 450 IIDFIQAKLA 459



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 68/178 (38%), Positives = 94/178 (52%), Gaps = 20/178 (11%)

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           ++T + R+ + SY+ LP   YQIQ KFRDE RPRFGVMR+REF M DAYSFD+  EG + 
Sbjct: 1   MITALVRNEVSSYKQLPLNLYQIQTKFRDERRPRFGVMRAREFSMMDAYSFDIDKEGLQK 60

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           SY+ M  +Y + F R+GL   P+ A+SG IGG+ S EF VLA++GE  +       D+  
Sbjct: 61  SYDAMHAAYCKAFDRMGLDYRPVLADSGAIGGNGSQEFHVLAESGEDLIVF-STESDYAA 119

Query: 233 PSEN-------------------TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             E                     D  +  ++  +VEQ   P   T      K  D++
Sbjct: 120 NIEKAEALAPAAEAAAPTQEMTLVDTPNAKTIAELVEQHGLPIEKTVKTLFVKASDAI 177


>gi|146169598|ref|XP_001017218.2| threonyl-tRNA synthetase family protein [Tetrahymena thermophila]
 gi|146145134|gb|EAR96973.2| threonyl-tRNA synthetase family protein [Tetrahymena thermophila
           SB210]
          Length = 882

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 80/466 (17%), Positives = 139/466 (29%), Gaps = 52/466 (11%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           L   +   RD      +  L T   HQ S G   + P G    + +  ++R++    G  
Sbjct: 331 LRQEELAKRDHRNIGKQQELFT--FHQFSPGCAFFYPNGAHIYNKLMEVLRKQYKIRGYS 388

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+  P L  A LW  SG +D Y + M  L   +++   + P +      +F S  +SYR+
Sbjct: 389 EVITPNLFDAQLWKISGHWDKYKENMFLLK-NDNEEHGFKPMNCPAHCLMFDSIQRSYRD 447

Query: 128 LPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP  +    +  R+E+     G+ R R F   DA+ F    +  +            ++ 
Sbjct: 448 LPLRYADFGVLHRNEVHGALSGLTRVRRFQQDDAHIFCTMDQIMEE-IKNALDFIDYMYS 506

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             G K       + P       E    A+    +   +          +   +   I + 
Sbjct: 507 LFGFKYSLA-LSTRPDNYIGEIEMWDQAENALKKGLEAFGKPWAIKAKDGAFYGPKIDIQ 565

Query: 247 SIVEQWTAPYAATSDVHN-----EKLFDSLPENKRVSARGIEVGHIF------------Y 289
                       T  +         L    PENK    +  +                  
Sbjct: 566 LYDAFDRGHQCGTIQLDFNLPIRFNLQYRAPENKDDIEKQRKKQESTEESVPLSQEEKKK 625

Query: 290 FGTKYSLPMSATFKGADGKDHYVQ---------------MGSYGIGAMRV---------- 324
              + S   SA                                 +G  R           
Sbjct: 626 LEQQISEGESADSLSHKKSKKSTDSSAQSQASEKKYVVAPHHLKLGFQRPVILHRAVIGS 685

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
               +    +     WP  ++P ++ +  I A      D  + +  RL   G  V  D  
Sbjct: 686 FERFLAILCEQTAGKWPFWLSPKQLIICPITAK---VNDFAQDVADRLKVEGYKVAVDLS 742

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDM 429
              I  +   A L  +    +VG +      V+++ R  T  +E M
Sbjct: 743 ESTIQKKVRNAQLEQYNYIAVVGEEEKRGGYVDLRARDTTKDQERM 788


>gi|253581047|ref|ZP_04858308.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847710|gb|EES75679.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 479

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 146/412 (35%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  +  P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMAIKPAGYAIWENIQHELDRRFKETGVQNVYMPIFIPESLLQKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D   + +   PT E +  D +   I+S+R+LP  + Q     R E   R   +RS
Sbjct: 99  THGGLDPLQERLCVRPTSETLFCDFYAKEIQSHRDLPKVYNQWCSVVRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++    +M   Y                               
Sbjct: 158 REFLWQEGHTAHATAEEAEERTIQMLNLYADFCE-------------------------- 191

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                 E      I    +  E+++   A  +            
Sbjct: 192 ----------------------EVLAIPVIKGQKTDKEKFSGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FG  ++      +   + K  YV   S+G+   R++ A+I   
Sbjct: 219 ESLMHDGKALQSGTSHNFGDGFARAFGIQYTDKENKLQYVHQTSWGM-TTRMIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP +  +I I+   +   +  ++++A L   G  V  DD  +  G +F
Sbjct: 278 GDNSGLVLPPRIAPVQAVIIPIQQRKEGVLEKADEMFAALKAAGVRVKVDDTDKSPGFKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  ++ G P+++  G K + + +  I  R T  +  ++ +E++         
Sbjct: 338 AEQEMRGIPIRIECGPKDIENGQAVICRRDTREKYTVTFDELVEKVQEILET 389


>gi|154344603|ref|XP_001568243.1| threonyl-tRNA synthetase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065580|emb|CAM43350.1| putative threonyl-tRNA synthetase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 789

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 85/511 (16%), Positives = 168/511 (32%), Gaps = 93/511 (18%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD  +   +  L T   ++ S G   WLP G +  + +   +R++  R G  E+ 
Sbjct: 282 EEAAKRDHRVIGRQQNLFT--FNEVSPGSAFWLPHGARIYNTLVEFLRKKYRRCGFQEVI 339

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + S+ LW+ SG ++ Y   M        +     P +      +F S   SYR LP 
Sbjct: 340 SPNMYSSKLWMVSGHWEKYADNMF-CTKCEKEDFGLKPMNCPGHCIMFASQPHSYRELPI 398

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHS---------------Y 174
            +    +  R+EL     G+ R R F   DA+ F    + +                  +
Sbjct: 399 RYADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRMDQITDEMEGQMQFLSDVYGVLGF 458

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESG-------------PIGGDLSHEFIVLADTGETQV 221
              F    R  ++LG  ++  ++ES               +   L  +     D     V
Sbjct: 459 KFYFYHSTRPANKLGSDALWDQSESYLRAALNRFCGIPEELPDPLRPDQRFCYDGKPESV 518

Query: 222 FCSKDFMDFPIPSENTDFDDIISL----NSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
              K  M     SE+ +     +             A Y    D+    + D+L    + 
Sbjct: 519 KKMKILMKKVEHSEDPNAWKGPTNGGEGWIENAGDGAFYGPKIDI---VVEDALRRRHQC 575

Query: 278 SARGIEVGHIFYFGTKY-------------------------------------SLPMSA 300
           +   ++      FG KY                                     S P  +
Sbjct: 576 ATIQLDFNLPSRFGLKYTLPAAEKEEVAAASMEKRKHTDPAPTTASPPAAADDESKPKLS 635

Query: 301 TFKG-----------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           T++               +   V +    +G++    A++    +  G  WP  ++P ++
Sbjct: 636 TYEAAVRDLGIDLELDANQARPVMIHRAILGSLERSIAIL---CEHFGGDWPFWLSPRQV 692

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++ + A +       +K+   +   G     D+    +  +   ++   +   ++VG +
Sbjct: 693 MVVPVSASNYG---YAQKVRDTMHDAGFYADVDNGAATLDKKIRNSEKARYNFILVVGQQ 749

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
               + V I+ R      + SL EV+ + + 
Sbjct: 750 EQDATSVNIRARGERRLGNKSLAEVVQWFTE 780


>gi|229826593|ref|ZP_04452662.1| hypothetical protein GCWU000182_01968 [Abiotrophia defectiva ATCC
           49176]
 gi|229789463|gb|EEP25577.1| hypothetical protein GCWU000182_01968 [Abiotrophia defectiva ATCC
           49176]
          Length = 507

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   + +P L    L   E    + +  E   +
Sbjct: 68  GFVVLKPYGFGIWENIQKTLDSAFKSTGVENVCMPLLIPESLINKEKDHVEGFAPEAAWV 127

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E +  D +   I+SYR+LP  + Q     R E   R   +R+
Sbjct: 128 THGGSEELQERLCVRPTSETLFCDFYSKDIRSYRDLPKVYNQWCSVVRWEKETRP-FLRT 186

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++    +M   Y+  F                           
Sbjct: 187 REFLWQEGHTAHATEEEAQARTIQMLNVYVDFFE-------------------------- 220

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                           +  IP        I    +  E++    +  +            
Sbjct: 221 ---------------NELAIPV-------IKGQKTEKEKFAGAVSTYT-----------I 247

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG  ++     TF   D    Y    S+G+ + R++ A+I   
Sbjct: 248 EAMMHDGKALQSGTSHNFGDGFARAYDVTFTDKDNSIQYAHQTSWGV-STRMIGAIIMVH 306

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ +I I  + +   +   ++  RL      V  DD  +  G +F
Sbjct: 307 GDDNGLVLPPRIAPTQVMIIPIMQNKEGVLEKANELKNRL-SADFRVKLDDSDKTPGFKF 365

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  ++ G P++V +G K +  +K  +  R    + ++SL+E+    +    +
Sbjct: 366 ADQEMRGIPVRVEIGPKDIEANKCIVVRRDNREKTEVSLDELETKLAEILES 417


>gi|159036441|ref|YP_001535694.1| threonyl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|157915276|gb|ABV96703.1| threonyl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 405

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/436 (15%), Positives = 128/436 (29%), Gaps = 40/436 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           D      +L L T      +  G+  WLP G  A   V   IRE + + G   +  P L 
Sbjct: 3   DHRRLGRELGLFT--SDPLAGAGLPLWLPAGAAARHAVEEYIRELERQAGHQHVLTPPLG 60

Query: 76  SADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             +L+  SG  D +  +M        D   +  P        ++RS  +S R+LP    +
Sbjct: 61  KRELFELSGHLDFFADDMFPPMRLSADDEFVLRPALCPHHALVYRSRGRSRRDLPLRIAE 120

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +   +R E     G +     +  +      T +       ++          LG++   
Sbjct: 121 LGGMYRAERSGVLGGLARVRAISLNDAHNFCTLDQVGAEVAEILRLIREAHAALGVRPAG 180

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            R                    GE +    +   +          D      +      A
Sbjct: 181 YRLSLRG--------------PGE-RYVGDEADWERAEELLRAALD--GVEYTEGVGEAA 223

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQ 313
            Y    D+   ++ DS      +S   ++                 ++  + G +   V 
Sbjct: 224 FYGPKIDI---QVVDSAGRESTLSTVQLDF--------DKPERFDLSYVDSGGARRRPVM 272

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G+M  +   +   H+G    W   V    + +            A E   A   
Sbjct: 273 VHRSLVGSMERLFGYLIEVHEGTFPAWYAPVQLVVLPIA------AGQDSAAETFAAAGQ 326

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G           +G +   A     P   +VG +  +  +V ++ R       +   E
Sbjct: 327 AAGLRAEV-HRNGSLGGRIREAARARIPYAAVVGPREAAVGQVSLRLRDGRSLAPLPAAE 385

Query: 434 VINYASHRFSNNRPVL 449
            I   +   +   P L
Sbjct: 386 AIALVARVVATRSPEL 401


>gi|210623133|ref|ZP_03293599.1| hypothetical protein CLOHIR_01549 [Clostridium hiranonis DSM 13275]
 gi|210153810|gb|EEA84816.1| hypothetical protein CLOHIR_01549 [Clostridium hiranonis DSM 13275]
          Length = 482

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/413 (16%), Positives = 151/413 (36%), Gaps = 67/413 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + +      +   TG      P L    L   E+   + +  E+  +
Sbjct: 40  GFMVIKPYGYALWEKIQEFFDAKIKATGHKNCYFPLLIPESLLTKEAEHVEGFAPEVAWV 99

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                   ++ +   PT E ++  ++   +KSYR LP+ + Q     R E   R   +R+
Sbjct: 100 TQGGNKTLEERLCVRPTSETIICTMYAKWLKSYRELPYLYNQWCSVVRWEKTTRP-FLRT 158

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++                          +   +  ++  + + 
Sbjct: 159 SEFLWQEGHTLHETYEEAEKET----------------------LDILQMYKEVCEDLLA 196

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +       +   K   +     E T                                   
Sbjct: 197 M-----PVIDGQKSESEKFAGGERTYT--------------------------------I 219

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   + G  ++     TF   +G   +    S+GI + R++  +I + 
Sbjct: 220 EAMMHDGKALQSGTSHFLGQHFTKAFDITFADREGGMSHPYHTSWGI-STRLIGGLIMTH 278

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQ 391
            D +G++ P  +AP ++ +I I A+     +  +++YA L + G  V  DD      G +
Sbjct: 279 SDNRGLVLPPRIAPTQVMIIPIAANKGGVMEKVDELYAALKEKGARVEVDDRPNYSTGYK 338

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              +++ G P+++ +G K + +++  +  R T  +E +SL+ ++ Y +  F  
Sbjct: 339 LNDSEMKGIPVRIEIGPKDIENNQAMVFRRDTLEKEAVSLDNLVEYVTGLFDT 391


>gi|322495387|emb|CBZ30691.1| putative threonyl-tRNA synthetase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 787

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 83/511 (16%), Positives = 165/511 (32%), Gaps = 92/511 (18%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD  +   +  L     H+ S G   WLP G +  + +   +R++    G  E+ 
Sbjct: 281 EEAAKRDHRVIGRQQNLFN--FHEVSPGSAFWLPHGARIYNTLVEFLRKKYRCCGFQEVI 338

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + S+ LW+ SG ++ Y   M        +     P +      +F S   SY+ LP 
Sbjct: 339 SPNMYSSKLWMVSGHWEKYADNMF-CTKCEKEDFGLKPMNCPGHCIMFASQPHSYKELPI 397

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHS---------------Y 174
            +    +  R+EL     G+ R R F   DA+ F    + +                  +
Sbjct: 398 RYADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRMDQITDEMEGQMQFLSDVYGVLGF 457

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESG-------------PIGGDLSHEFIVLADTGETQV 221
              F    R  ++LG  ++  ++ES               +   L  +     D     V
Sbjct: 458 KFYFYHSTRPANKLGSDALWDQSESYLRTALNRFCGIPEELPDPLHPDQRFHYDGKPDSV 517

Query: 222 FCSKDFMDFPIPSENTDFDDIISL----NSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
              K  M     SE+ +     +             A Y    D+    + D+L    + 
Sbjct: 518 KKMKMLMKKAERSEDPNAWKGPTNGSEGWIENAGDGAFYGPKIDI---VVEDALRRRHQC 574

Query: 278 SARGIEVGHIFYFGTKY------------------------------------SLPMSAT 301
           +   ++      FG KY                                    S P   T
Sbjct: 575 ATIQLDFNLPSRFGLKYTLPTAEKDEATVGPTEKRRHADPASTASSPAVAEGESKPKPGT 634

Query: 302 FKG-----------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           ++               +   V +    +G++    A++    +  G  WP  ++P ++ 
Sbjct: 635 YEAAVRDLGIDLELDANQARPVMIHRAILGSLERSIAIL---CEHFGGDWPFWLSPRQVM 691

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ + A +    +  +++   +   G     D+    +  +   A+   +   ++VG + 
Sbjct: 692 VVPVSASN---YEYSQQVRDTMHDAGFHADVDNGAATLDKKIRNAEKARYNFILVVGQQE 748

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              + V I+ R      + SLEE + +    
Sbjct: 749 QDATGVNIRARGERRLGNKSLEEALQWFKEL 779


>gi|320528402|ref|ZP_08029564.1| prolyl-tRNA synthetase [Solobacterium moorei F0204]
 gi|320131316|gb|EFW23884.1| prolyl-tRNA synthetase [Solobacterium moorei F0204]
          Length = 561

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 98/253 (38%), Positives = 142/253 (56%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    +   ++EN +D +  S  L++R GMI + S G+Y  LP+G + L  + AIIR+E
Sbjct: 1   MRLKNSYFFTIRENAKDEDSVSSNLLVRAGMIKKSSAGVYMMLPMGNRVLSKIYAIIRDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+    E+S+P+L   +++V SGR   +GK M  L DR     + GPTHEE+     + 
Sbjct: 61  MNKIDCQELSMPSLIPEEVYVSSGRRAGFGKGMFSLEDRKGVPYVLGPTHEELFAMAAKM 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+SY+++PF+ YQIQ KFRDE RPR+G++R REF MKD+Y+FD    G   SY K F +
Sbjct: 121 QIRSYKDMPFSLYQIQTKFRDEPRPRYGLIRVREFTMKDSYTFDKDEAGLDVSYAKQFNA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  I +RL L    +RA++G +GG LS EF  +   GE  +  S D              
Sbjct: 181 YKNIMNRLHLDYRIVRADTGVMGGLLSEEFQAITPLGEDILVLSDDDSFASNIEVAPCVP 240

Query: 241 DIISLNSIVEQWT 253
           +I      +E  T
Sbjct: 241 EIAEKEDTLETLT 253



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 4/206 (1%)

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSL 296
            +      + V Q         D+ N +  D  P  + V     GIEVG+ F  GTKYS 
Sbjct: 358 ANKTSYHYTGVNQRDFTLTGHGDLRNIQEGDKNPNGEGVVHFAHGIEVGNTFKLGTKYSK 417

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
            +   +   + +  YV MGSYGIG  R +AA+ E + D  GI WP  +APF+++++ I  
Sbjct: 418 ALDLQYLDQNNQLQYVWMGSYGIGPARAMAALAEQNADENGINWPKDLAPFQVAVVIISM 477

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D+       +++  L   G +V  D+  E+ G +F   +L+G P ++ VG + V+D KV
Sbjct: 478 KDEEQVRIGNELHDELQAQGIEVVLDNRDERPGVKFKDMELIGIPFRITVG-RGVADGKV 536

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
           E+K R TG   ++ + E I+      
Sbjct: 537 ELKSR-TGESMEVPVTEAIDKLKELL 561


>gi|218132358|ref|ZP_03461162.1| hypothetical protein BACPEC_00217 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992696|gb|EEC58698.1| hypothetical protein BACPEC_00217 [Bacteroides pectinophilus ATCC
           43243]
          Length = 578

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 99/255 (38%), Positives = 141/255 (55%), Gaps = 2/255 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ +       +E P D  I S++  +R G I   + GIYS  P  ++    +  IIREE
Sbjct: 1   MKLNNLIGERFKEKPADCVIDSYEFCIRGGYIKYVANGIYSLFPPMRRITQKIEKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +  G  E+  P    + LW ESGRY S G E+LR  DRN   M+ G THEE    + R 
Sbjct: 61  MDSVGCQEVLFPVTLPSSLWEESGRYQSVGDELLRFKDRNGSQMVLGMTHEEAAVHLVRE 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           + +SY   PF+ YQIQ KFRDE RPR G++R REF MKDAYSF LT +  +  Y +M  S
Sbjct: 121 YGRSYARYPFSIYQIQTKFRDEARPRAGLIRVREFTMKDAYSFHLTQKSLEDYYQQMANS 180

Query: 181 YLRIFHRLGLKSIPM-RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y RIF ++G+  +   +++SG IGG++SHE+++L D GE  +    D   +    E  + 
Sbjct: 181 YNRIFAKVGIPEVISVKSDSGMIGGNVSHEYMLLCDAGEDSIVLCDDC-GYSANIEAAET 239

Query: 240 DDIISLNSIVEQWTA 254
           +    L+  VE+   
Sbjct: 240 NVEKELSVEVEELKK 254



 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 65/215 (30%), Positives = 104/215 (48%)

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           D      N      + LN   E     Y   + +    +     +     +RGIEVG+IF
Sbjct: 353 DNMCCGANEIDYHYVGLNLHREIGEIEYVDVAKIQEGGICPCCNKKSIRISRGIEVGNIF 412

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             GTKYS  M   +   +G++    MG YGIG  R+ A++ E+ HD  G IWP SVAP++
Sbjct: 413 QLGTKYSDAMGLKYVDTNGEEKVPIMGCYGIGIGRLAASICEAHHDDYGPIWPISVAPWQ 472

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           + +  ++A    C++  ++IY  L     +V +DD     G  F+ ADLLG P+++I G 
Sbjct: 473 VHICCMRADKIECKEVTDRIYNELQSSNVEVLYDDRKVSAGVMFSDADLLGIPIRIIAGP 532

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           K +   KVEI  R   +++ + ++ V+        
Sbjct: 533 KNIEQGKVEILTRNKAVKKLVDIDSVVEEVGELIK 567


>gi|294632148|ref|ZP_06710708.1| threonyl-tRNA synthetase [Streptomyces sp. e14]
 gi|292835481|gb|EFF93830.1| threonyl-tRNA synthetase [Streptomyces sp. e14]
          Length = 442

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 135/436 (30%), Gaps = 39/436 (8%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      +L L          G+  WLP G      +   IR+ + R G   +  P L  
Sbjct: 37  DHRKLGRELDLFDT-DPLLGAGLPYWLPDGATVRHTLEEYIRDAERRAGYRHVYSPVLGK 95

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            +L+  SG +D Y  +M    D   + ++  P+       I+RS   S+R LP    ++ 
Sbjct: 96  RELYEISGHWDHYSDDMFPPMDLGGEQVVLRPSLCPHHAVIYRSRAHSHRELPLRMAELG 155

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             +R EL    G +     +  +      T +              R +  LG+     R
Sbjct: 156 GMYRSELSGVLGGLTRVRAIQLNDAHIFCTLDQVAEEAGAALEMIRRAYEALGVTPARYR 215

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                 GG                   + +             D         E   A Y
Sbjct: 216 LSLPGPGGK---------------YVAAPEKWRRATALLTEVLDRSGLPYEAAEGEAAFY 260

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMG 315
               DV   ++ DS      +S   ++                  + GADG  H    + 
Sbjct: 261 GPKIDV---QVADSAGRESTLSTVQVDFHQP--------ERFDLHYIGADGARHRPVMVH 309

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
              IG++    A +  +H G    W           + +           E +  R + +
Sbjct: 310 RSIIGSVERAVAHLVEAHGGAFPAW------LAPVQLVVLPVSAAELPQAEALARRCTDL 363

Query: 376 GCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G        + G  +G++   + L   P Q ++G+K  +D  V ++ R           +
Sbjct: 364 GLRAEIAAPERG-TLGARIRASRL--VPYQAVIGAKEATDDHVSLRLRDGRRLPPQPTTD 420

Query: 434 VINYASHRFSNNRPVL 449
            +   +   +++ P L
Sbjct: 421 ALTRINALTTSHNPEL 436


>gi|332844839|ref|XP_003314929.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic isoform
           3 [Pan troglodytes]
          Length = 766

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 66/406 (16%), Positives = 133/406 (32%), Gaps = 40/406 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 385 KMMRDWEKFQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLTDFIREE 442

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y + M       D      P +      +F  
Sbjct: 443 YHKRDFTEVLSPNMYNSKLWEASGHWQHYSENMFTFEIEKDT-FALKPMNCPGHCLMFAH 501

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 502 RPRSWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLR 560

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  +          
Sbjct: 561 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEIEMWNEAEKQLQNSL 602

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 603 MDFGEPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 655

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 656 SK--DGDDKKRPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP--- 707

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
            C     ++ +   + G     D D    +  +   A L  +   +
Sbjct: 708 TCEKYALQVSSEFFEEGFMADVDLDHNCTLNKKIRNAQLAQYNFIL 753


>gi|29840011|ref|NP_829117.1| prolyl-tRNA synthetase [Chlamydophila caviae GPIC]
 gi|81838013|sp|Q824A9|SYP_CHLCV RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|29834358|gb|AAP04995.1| prolyl-tRNA synthetase [Chlamydophila caviae GPIC]
          Length = 577

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 93/279 (33%), Positives = 147/279 (52%), Gaps = 3/279 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F    +   ++A + S++L+ + G I + +KGIY++ PL  +    +  I+REE
Sbjct: 1   MKTSQLFYKTSKNANKEAAVLSYELLEKAGYIFKTAKGIYTYTPLFWRVALKMMDIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L  A+LW ++GR++++  E  +  L DR DK +   PTHEEV++   
Sbjct: 61  LNAIGGQELVLPILHPAELWQKTGRWEAFRSEGLLYTLTDREDKELCLAPTHEEVVSMFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +   + LP   YQI  KFRDE+RPRFG+MR+REFLM+D+Y+F  +PE     Y K+ 
Sbjct: 121 SQWLSGRKQLPIHLYQIATKFRDEIRPRFGLMRAREFLMEDSYTFSDSPEQMNEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +Y  IF RL +K + + A+ G IG   S EF VL   GE  + C        I +  + 
Sbjct: 181 QAYQNIFDRLEIKYVIVEADGGKIGKGKSEEFHVLCSLGEDTI-CVSGAYGANIEAAVSQ 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
                     +            + + + F SLP +K +
Sbjct: 240 PPQYTYDKEHLPIEEVATPDVRTMEHLQDFFSLPSHKII 278



 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 2/215 (0%)

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           I + NT      ++N   +     Y          L  +          G+EV HIF  G
Sbjct: 359 ICAGNTKDKHYKNVNWDRDIPRPEYGDFLLAEAGDLCPANGNAPYEVFEGVEVAHIFNLG 418

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           T+Y+      F+    +     MG+YGIG  R +AA IE   D +GI+WP ++APF I++
Sbjct: 419 TRYTECFEVGFQNEQEEQQTCWMGTYGIGIGRTLAACIEQLADDRGIVWPKAIAPFDIAI 478

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +     D   ++A EKIY  L   G     DD  E++G +   +DL+G P ++I+G  F 
Sbjct: 479 LY-NGGDAASQEAAEKIYKDLQNYGYAPLLDDRNERLGFKLKDSDLIGIPYKLILGKTFQ 537

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +   +EI+ R +  +  +  ++  N+  + F   R
Sbjct: 538 NSGVLEIESR-SREKFFVEPKDFFNWCKNYFPKPR 571


>gi|50420561|ref|XP_458817.1| DEHA2D08206p [Debaryomyces hansenii CBS767]
 gi|49654484|emb|CAG86963.1| DEHA2D08206p [Debaryomyces hansenii]
          Length = 474

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/458 (15%), Positives = 146/458 (31%), Gaps = 61/458 (13%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
            +  I++ +L+  T      + G   +LP G +  + +   ++ +Q + G  E+  P + 
Sbjct: 41  ANHAISNKQLLYTT---DSLTPGSIFFLPHGTRIFNKLVHFMKNQQLKYGFQEVITPLIY 97

Query: 76  SADLWVESGRYDSYGKEMLRL-------------ADRND-----KAMIYGPTHEEVMTDI 117
              LW  SG +++Y ++M ++                +D           P +      I
Sbjct: 98  KTKLWEMSGHWENYKEDMFKVVGNDLSKEEDISHEHNHDDSEGLHDYGLKPMNCPGHCLI 157

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F    +SY  LP  +       R+E      G+ R R F   D + F    +        
Sbjct: 158 FSKFERSYNELPIRYSDFSSLHRNEASGALSGLTRVRRFHQDDGHIFCELYQIQDE-ITN 216

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                   +   G            I      EF +     + +        +       
Sbjct: 217 TINLIKDTYKVFG------------IDSVKDVEFFLSTRPTD-KFMGDITTWNDAESQLT 263

Query: 237 TDFDDIISLNSI--VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
              D+     +    E   A Y    D+  +  FD   +  +V    ++    F   +++
Sbjct: 264 NVLDNTAGRGNWSIREGDGAFYGPKIDILLKDAFD---KKHQVGTIQLD----FQLPSRF 316

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
            L   +     +  +  + +     G++    A++    D     WP  + P +  +I +
Sbjct: 317 KLNYISK--DGNRDNQPIMIHRAVFGSLERFFAILL---DHYQGKWPFWINPRQAVIIPV 371

Query: 355 KA-HDQVCRDACEKIYARLSK----------VGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
              H        +K+   +                V  D   E +G++   A   G+   
Sbjct: 372 NDTHHDAAVALQKKLVGDIMDDTVEVSPMTGYNFYVDVDSRSETVGNRIKDATQKGYSYI 431

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +++G K + +  V I+ R      +++ EE+       
Sbjct: 432 LMLGDKDLQNGTVAIRSRDDRKISNLTPEEIYQKFIDL 469


>gi|46107732|ref|XP_380925.1| hypothetical protein FG00749.1 [Gibberella zeae PH-1]
          Length = 499

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 152/496 (30%), Gaps = 91/496 (18%)

Query: 4   SKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           S+++     +  P D      +  L    I  +S G   +LP G +  + +   +R++  
Sbjct: 28  SRFYSQKTEKREPPDHRKLGLQQELFISSI--YSPGSPIFLPNGARIFNRLVDFLRKQYV 85

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEML-----------------------RLADR 99
           R G  E+  PT+    LW +SG  ++Y  +M                        +  + 
Sbjct: 86  RYGFEEVITPTIYKKSLWAKSGHLENYADDMYAVRGNTEPPPQHDGCCGSHQEYLKPEEE 145

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMK 158
            +      P +      IF S   SYR+LP  +       R+E+     G+ R R F   
Sbjct: 146 EEGDYGLKPMNCPGHCLIFASKRHSYRDLPVRYADFSPLHRNEISGALSGLTRVRRFHQD 205

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           D + F   P   +    K       ++  L   +    A S                   
Sbjct: 206 DGHIFCR-PSQVEEEIKKTLDFVKVVYTVLRFGASYRLALSTRPKDH------------- 251

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                ++   D    +     D       + E   A Y    D+    L DS  ++ + +
Sbjct: 252 --YIGTEAEWDQAESALKRALDASGMEWGVKEGDGAFYGPKIDI---VLTDSDGKDHQTA 306

Query: 279 ARGIEVGHIFYFGTKYSLPMSA---------------TFKGADGKDHYVQMGSYGIGAMR 323
              ++    F    ++ L   A                     G    V +    +G++ 
Sbjct: 307 TIQLD----FQLPKRFELEYQAPAPEYEARGETTEDPALLAEYGPVRPVMIHRAVLGSVE 362

Query: 324 VVAAVIESSHD-GKGIIWPDSVAPFKISLINIKAHD--QVCRDAC----EKIYARLSK-- 374
            + A++   +D           A       +    D  +  RD      ++ Y +L    
Sbjct: 363 RLMALLIEKYDGKWPFWLNPRQAIVLTVNTSTTVLDWAEHVRDVLVGQNKQFYEQLESGA 422

Query: 375 -----------VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
                       G  V  D     +G++   A   G+   ++VG   V + +V +     
Sbjct: 423 LPSSQDHAFRPTGLAVDVDTTARPLGAKIKEARNNGYGQILVVGEDDVKNQQVAL----- 477

Query: 424 GIREDMSLEEVINYAS 439
             +E ++ E++     
Sbjct: 478 -GKERLTPEDLRERLK 492


>gi|322696936|gb|EFY88721.1| putative threonine--tRNA ligase [Metarhizium acridum CQMa 102]
          Length = 491

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 84/474 (17%), Positives = 151/474 (31%), Gaps = 86/474 (18%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y     +  P D      +  L   +   +S G   +LP G +  + +   IR++  R 
Sbjct: 29  QYSQKPEKREPPDHRKIGLQQELF--ITSAYSPGSPIFLPNGARIFNRLIDFIRKQYARY 86

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR------------------------N 100
           G  E+  PT+    LW +SG  ++Y  +M  +                            
Sbjct: 87  GFQEVITPTIYKKALWAKSGHLENYADDMYTVTGNASTPGKDTGGCCGSDHGPVEPDSEA 146

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKD 159
           D      P +      IF S ++SYR LP  +       R+E+     G+ R R F   D
Sbjct: 147 DNEYGLKPMNCPGHCLIFASKVRSYRELPVRYADFSPLHRNEVSGALSGLTRVRRFHQDD 206

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            + F   P   +    K       ++  L L      A S                    
Sbjct: 207 GHIFCR-PSQVEEEIKKTLDFVKAVYGVLRLGVGYRLALSTRPKDHF------------- 252

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
               ++D  +       T  D      SI E   A Y    D+    + DS  +  + + 
Sbjct: 253 --IGTEDEWNRAEDRLKTALDSSGMEWSINEADGAFYGPKIDI---VIKDSDGKEHQTAT 307

Query: 280 RGIEVGHIFYFGTKYSLPMSA---------------TFKGADGKDHYVQMGSYGIGAMRV 324
             ++    F    +++L   A                     G    V +    +G++  
Sbjct: 308 IQLD----FQLPKRFALEYQAPAPEYEARGETTNDPILLAEYGPVRPVMIHRAVLGSVER 363

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL----SKV----- 375
           + A++  S+D     WP  + P +  ++ +        D  +++   L     +      
Sbjct: 364 LMALLIESYD---GKWPFWLNPRQAIILTVNTSRP-VLDWADEVKEILLGLRKEAGQTST 419

Query: 376 -------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI-KHR 421
                  G  V  D     +GS+   A   G+   ++VG + V   +V + K R
Sbjct: 420 EGPVNPTGLAVDVDYSARSLGSKIREARTNGYSQILVVGEEDVKHGQVSLGKER 473


>gi|297191715|ref|ZP_06909113.1| threonyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197721430|gb|EDY65338.1| threonyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 408

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 140/435 (32%), Gaps = 43/435 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           D      +L L     +I     G+  WLP G      +   IR  + R G   +  P L
Sbjct: 3   DHRKLGRELGLFDTDPLI---GAGLPYWLPDGATVRHTLEEYIRSAERRAGYRHVYSPVL 59

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
              +L+  SG +  Y  +M    D   + ++  P+       I+RS   SYR LP    +
Sbjct: 60  GKRELYEISGHWAHYSDDMFPPMDLGGEQVVLRPSLCPHHAVIYRSRSHSYRELPLRMAE 119

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +   +R EL    G +     +  +      T +              R +  LG+    
Sbjct: 120 LGGMYRSELSGVLGGLTRVRAIQLNDAHIFCTLDQVAEEARAALEMIRRAYEALGITPAR 179

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            R      GG                   + +             D         E   A
Sbjct: 180 YRLSLPGPGGK---------------YVAAPEKWKRSTALLTDVLDRSGLPYEAAEGEAA 224

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-Q 313
            Y    DV   ++ D       +S   ++      F           + GADG  H    
Sbjct: 225 FYGPKIDV---QVTDGAGRESTLSTVQVDFHQPEQFD--------LHYIGADGARHRPVM 273

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    IG++    A      +  G  +P  +AP +++++ I   +         +  R +
Sbjct: 274 VHRSIIGSVERAVA---HLIEQHGGAFPAWLAPTQVAILPISDAE---LPHAAALARRCA 327

Query: 374 KVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            +G        + G  +G++   A L   P Q ++G+K  +D  V ++ R     +   +
Sbjct: 328 GLGLRAEIAGPERG-TLGARVREARL--VPYQAVIGAKEAADDHVALRLRGGRRLDPQPV 384

Query: 432 EEVINYASHRFSNNR 446
            EV+         +R
Sbjct: 385 GEVLTRIVALVDAHR 399


>gi|21222189|ref|NP_627968.1| threonyl tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|10432482|emb|CAC10316.1| putative threonyl tRNA synthetase [Streptomyces coelicolor A3(2)]
          Length = 430

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 147/440 (33%), Gaps = 48/440 (10%)

Query: 17  DAEIASHKLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           D      +L L      M      G+  WLP G      +   +RE + R G   +  P 
Sbjct: 28  DHRRLGRELALFDTDPLM----GAGLPYWLPDGAVVRHTLEEYVREAERRAGYRHVYSPV 83

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L   +L+  SG ++ Y  +M    +   + ++  P+       ++RS  +SYR LP    
Sbjct: 84  LGKRELYEISGHWEHYRDDMFPPMELGAEEVVLRPSLCPHHALVYRSRARSYRELPLRIA 143

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           ++   +R E     G +     +  +      TP+ +            R    LG+++ 
Sbjct: 144 ELGAMYRSEPSGVLGGLSRVRAIHLNDAHIFCTPDQAAAEARAALGLIRRAHADLGIRAA 203

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
             R      GG                     +             D        VE   
Sbjct: 204 RHRLSLPGPGGK---------------YVADPELWRRATALLEEALD--GLPYEAVEGEA 246

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV- 312
           A Y    DV  E   D+      +S   I+      FG +        + G DG  H   
Sbjct: 247 AFYGPKIDVQIE---DAAGRESTLSTVQIDFHQPERFGLR--------YLGPDGARHRPV 295

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    IG++    A      +  G  +P  +AP ++ ++ +       R+A   +  + 
Sbjct: 296 MVHRSVIGSVERAVA---HLIEAHGGAFPAWLAPVQLVVLPVAG---AQREAAYALVRQA 349

Query: 373 SKVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDM 429
           + +G      D   G  +G++   A     P Q ++G +   D   V+++ R       +
Sbjct: 350 TDLGLRAEVADPERG-SLGARVRAA--RKVPYQAVIGVREAQDGDLVDVRLRDGRRPGQL 406

Query: 430 SLEEVINYASHRFSNNRPVL 449
           S  E+++  + R     P L
Sbjct: 407 SGTELLHRITDRVEARGPEL 426


>gi|332796853|ref|YP_004458353.1| prolyl-tRNA synthetase [Acidianus hospitalis W1]
 gi|332694588|gb|AEE94055.1| prolyl-tRNA synthetase [Acidianus hospitalis W1]
          Length = 481

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 95/418 (22%), Positives = 165/418 (39%), Gaps = 72/418 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G+  W+P G K   NV  IIR+  + TG  E+  P L    L   ES     +  E+  +
Sbjct: 35  GMGVWMPYGFKIRQNVINIIRKFLDETGHEEVLFPLLIPEYLLRKESEHIKGFEGEVYWV 94

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               ++ +       PT E  +T +    IKSY+ LP  +YQI   FR E +    ++R 
Sbjct: 95  TKGGEEDLDIRLALRPTSEVAITYMESLWIKSYKELPKKYYQIVSIFRYETKATRPMIRL 154

Query: 153 REFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           RE    K+A++  ++ E ++    +    Y +IF  L                       
Sbjct: 155 REVTTFKEAHTLHVSYEDAERQVKEAIEIYKKIFDTL----------------------- 191

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                G   +   +   D    +E+T   D +  +                         
Sbjct: 192 -----GIPYILSERPEWDRFAGAEHTYAFDTLMPDG------------------------ 222

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   R +++G + + G  ++  +    + ADG   Y    SYGI + RV+A  I  
Sbjct: 223 --------RALQIGTVHHLGQHFTKALDYKIQKADGSLDYPYQTSYGI-SDRVIAVSIAV 273

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYARLSKVGCDVFWD-DMGE 386
           + D  G I    +AP K+ +I I A  +       + C++I  +LS  G     D D  +
Sbjct: 274 NGDDHGPILNPIIAPIKVVIIPIPAKTEEDNKRVENYCKEIQEKLSSAGISAVVDSDKEK 333

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             G +F   ++ G PL++ +G + V++  + IK R T   + +  +E+I   +   S+
Sbjct: 334 TPGEKFYYWEMKGVPLRIEIGLREVNNETITIKRRDTLESKIVKKDELIKTVNDLLSS 391


>gi|123449736|ref|XP_001313584.1| threonyl-tRNA synthetase family protein [Trichomonas vaginalis G3]
 gi|121895473|gb|EAY00655.1| threonyl-tRNA synthetase family protein [Trichomonas vaginalis G3]
          Length = 709

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 143/458 (31%), Gaps = 55/458 (12%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD       L L     H+ S G   + P G      + ++IR++  +   +E+
Sbjct: 282 LEEAAKRDHRKLGTDLGLF--FFHEWSPGCAFFYPEGCLMYRRLMSMIRQQYLKRQFVEV 339

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLA---------------------DRNDKAMIYGP 108
             P +   DL+  SG +  Y  +M                          +  + M   P
Sbjct: 340 ITPNIFYDDLFKTSGHWAHYRDDMFHFKVDDGAPTEEELAAQDAKDPVAQKAVREMGMKP 399

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTP 167
            +      +FRS ++SY+ +P    +  +  R+E      G+ R R F+  DA+ F    
Sbjct: 400 MNCPGHCLVFRSKVRSYKEMPIRMAEFGVLHRNEATGALTGLTRVRRFVQDDAHIF---- 455

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                   ++      +    G   + +      I  +              +       
Sbjct: 456 ARYDQIGEEISDGLDFMTEVYGYFGMELEFTLSTINME--------------KYMGDLKV 501

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            +           D     +      A Y    DV    + D L    +++   ++    
Sbjct: 502 WENATNMLRQALIDNKKNFTEAPGEAAFYGPKIDVL---VKDCLGRRHQLATIQLD---- 554

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F    K+ L               V +    +G++    A+      GK   W   ++P 
Sbjct: 555 FQLPEKFDLTY---VDAELKPQRPVMIHRAVLGSLERFIAIAIEHFAGKFPFW---MSPR 608

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +I +I      +      ++IY  +   G  V   D  E +  +   A  +   + +I+G
Sbjct: 609 QICIIPQNMTKEGQMKYIKEIYDMMHLEGFAVEIADGPESMNKKIVNAFKMSNNVALIIG 668

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            + V    V  + R       + L++ +N       N 
Sbjct: 669 DREVESRSVAARWRGENAPTVVPLDQFMNQIRDMQKNY 706


>gi|281206251|gb|EFA80440.1| prolyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 880

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 94/225 (41%), Positives = 141/225 (62%), Gaps = 1/225 (0%)

Query: 4   SKYFLPILQENPRDAEIA-SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           SK F+P+ ++ P D ++  S  LM +TGMI + S G+Y  LPL  +AL+N+  II +E +
Sbjct: 343 SKLFIPMQRDQPLDKDMLKSQLLMQKTGMIRRASLGMYMTLPLAHRALENLIKIIDQEMS 402

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  ++S+P L S +LW ++GR++S G E++++ DR  +     PTHEE+ T +  +  
Sbjct: 403 NIGGQKLSMPKLLSKELWEKTGRWESSGDELIKVKDRKGEEYCLAPTHEEIFTSMLANER 462

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            +  NLP   YQI  K+RDE+RPRFG++R REFLMKD YSFD +   ++ +YN +  +Y 
Sbjct: 463 IATNNLPMKLYQIGDKYRDEIRPRFGLLRGREFLMKDMYSFDKSVADAEETYNLVKTAYH 522

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           RIF RLG+    + A+SG IGG  SHEF ++ D GE  +      
Sbjct: 523 RIFSRLGVNYACVEADSGNIGGSTSHEFQIITDVGEDTIVSCSKC 567



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 6/177 (3%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  RGIEVGHIF  GTKYS+P+ A  K ++G D  ++MG YGIG  R++AA++E+ 
Sbjct: 704 RGLMKFNRGIEVGHIFRLGTKYSVPLKANIKNSEGVDVPMEMGCYGIGVSRLMAALVEAH 763

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG---CDVFWDDM-GEQ 387
            D  GI+WP  VAP+K+ ++      +        ++Y  LSK       +  +D     
Sbjct: 764 KDLDGIVWPIQVAPYKLIILPYATELETENLRKATELYDYLSKEPSLTNQIILEDRLDIT 823

Query: 388 IGSQFAVADLLGFPLQVIVGS-KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              +   A ++G P  + V   K       E++ R TG +   ++ E++ +   + S
Sbjct: 824 FARRIKEATIIGVPYILFVTQSKTRDQDVYELEDRTTGEKSFFNMVELLYFFRFKLS 880


>gi|227872945|ref|ZP_03991245.1| proline--tRNA ligase [Oribacterium sinus F0268]
 gi|227841197|gb|EEJ51527.1| proline--tRNA ligase [Oribacterium sinus F0268]
          Length = 478

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 142/411 (34%), Gaps = 66/411 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+ A +      TG    S+P L    L   ES   + +  E+  +
Sbjct: 38  GFMVIRPAGYAIWENIMAALDSRFKATGVQNCSMPLLIPQSLLEKESEHVEGFAPEVAWV 97

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                 R ++ +   PT E +  D +   +KSYR+LP    Q     R E   R  + R+
Sbjct: 98  TSGGSKRLEERLCVRPTSEVLFCDYYSKVVKSYRDLPQLLNQWCSVVRWEKTTRPFL-RT 156

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++                                                H    
Sbjct: 157 REFLWQEG-----------------------------------------------HTVHA 169

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+  E +     D     + +E      +    +  E++    A  +            
Sbjct: 170 TAEEAEERTLLMLDIYADVLENELA-IPVVKGRKTDKEKFAGAIATYT-----------V 217

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++      FG  ++      +   +     V   S+GI   R + A+I   
Sbjct: 218 EALMHDGQALQCATSHNFGDGFAKAFQVQYLSKNNTVEPVHQTSWGI-TTRTIGALIMVH 276

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++++I I+ + +   D    +   L   G  V  DD  +  G +F
Sbjct: 277 GDDSGLVLPPRIAPVQVNIIPIQQNKEGVLDKAFDLMNTLMDAGLRVKVDDSDKTPGFKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           A +++ G PL++ +G K +   +V +  R T  +  +S E ++  +     
Sbjct: 337 ADSEVRGIPLRLEIGPKDIEAGQVVLVRRDTREKIVVSFENLVEESKKLLE 387


>gi|71032103|ref|XP_765693.1| prolyl-tRNA synthetase [Theileria parva strain Muguga]
 gi|68352650|gb|EAN33410.1| prolyl-tRNA synthetase, putative [Theileria parva]
          Length = 683

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 83/434 (19%), Positives = 153/434 (35%), Gaps = 67/434 (15%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV- 81
           ++++R+ MI  +   G Y +LP      +  N    ++  + G      P   + +    
Sbjct: 215 QVIVRSEMIEYYDISGCYIFLPASYFIWEIFNEWFNKQIKQRGVDNCYFPMFVTKERLEA 274

Query: 82  ESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +    D          PT E +M   F   I+SYR+LP    Q   
Sbjct: 275 EKTHLEGFSPEVAWVTRNGDVDFPDPIAIRPTSETIMYPEFSKWIRSYRDLPLKLNQWNS 334

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +RSREFL ++ ++   T + +  +  +M   Y                
Sbjct: 335 VVRWEFKQPTPFIRSREFLWQEGHTAHSTEKEALDTVYEMLDLY---------------- 378

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                      E++                              I  + S  E++     
Sbjct: 379 ------SKFYEEYL--------------------------SVPVIKGVKSENEKFAG--- 403

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                   K+  SL      + RG++       GT +S      ++  +G+   V   S+
Sbjct: 404 -------SKMTTSLEAFVPANGRGVQAATSHLLGTTFSDMFDIKYEDEEGEKRKVHQTSW 456

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVG 376
           G    R +  +I    D +G++ P  VA  ++ ++ I             ++Y  L++ G
Sbjct: 457 GF-TTRSIGIMIMVHGDDRGLVVPPRVAKTQVVIVPILTKTADQVISRVNELYKLLTESG 515

Query: 377 CDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V  DD  G   G +F   +L G PL++ VG+K V ++ V +  R    + D+ LE + 
Sbjct: 516 FRVKLDDRRGYTPGFKFNHWELRGVPLRLEVGAKDVENNTVRLVRRDNFAKADVPLENLT 575

Query: 436 NYASHRFSNNRPVL 449
                     +  L
Sbjct: 576 TTIQQLLDQIQNTL 589


>gi|291460058|ref|ZP_06599448.1| threonine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417399|gb|EFE91118.1| threonine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 626

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 76/476 (15%), Positives = 151/476 (31%), Gaps = 79/476 (16%)

Query: 5   KYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           K  L  ++E   RD +    +L L   +  + + G+  WLP G K    +    RE Q R
Sbjct: 170 KAHLKFVKEAQERDHKKLGAQLELF--LFDETAPGMPYWLPRGWKMYQALLKYSREVQER 227

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK--------------------- 102
            G  E++ P + +  LW+ SG +  Y   M  +   +                       
Sbjct: 228 HGYREIAAPLINNKKLWLISGHWAHYINNMFMVPGVSGWLKADAEIPGILENLAEQGEEP 287

Query: 103 ------------------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
                              M   P +       ++   +SYR LP  + +  +  R E  
Sbjct: 288 KNVKIQAGSVLYNRERMDTMAAKPMNCPNAMLTYKRKNRSYRELPIRYSEYDVLHRKEKS 347

Query: 145 PRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            +  G+ R +EF   D ++F +     +     +      I+   G+        + P  
Sbjct: 348 GQMNGLFRVQEFRQDDDHTFVM-ESQIEDEIKDIISIADEIYSTFGVSY-RAELSTRPED 405

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                E    A+    ++  +K                      I E   A Y    D+ 
Sbjct: 406 FMGDIEVWDRAEAALKRILTNKYGE---------------GGFEINEGDGAFYGPKIDL- 449

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAM 322
             ++ D+L    +     ++      FG         +++ A+G     V +     G++
Sbjct: 450 --QIKDALGREWQCGTIQLDFQLPHNFG--------LSYQTAEGVAAMPVVIHRAIYGSL 499

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                +I  +  G    W           + I           +K+++ L K G  V  D
Sbjct: 500 ERFIGIIIENFKGVFPFW------LSSEQVGIVPIRTEHNAYAKKVFSLLQKHGIRVEAD 553

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR-EDMSLEEVINY 437
                +  +         P  +++G +  +++ V I  R +  +  ++ +E  +  
Sbjct: 554 YSESNMKEKIKKYKNFKDPYILVLGDREAAENTVSINMRGSNRQLNNIPIERFLAM 609


>gi|312198148|ref|YP_004018209.1| threonyl-tRNA synthetase [Frankia sp. EuI1c]
 gi|311229484|gb|ADP82339.1| threonyl-tRNA synthetase [Frankia sp. EuI1c]
          Length = 411

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 83/434 (19%), Positives = 140/434 (32%), Gaps = 43/434 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           D      +L L     +I     G+  WLP G      +   IR  + R G   +  P L
Sbjct: 3   DHRKLGRELDLFDTDPLI---GAGLPYWLPDGATVRHTLEEYIRAVERRAGYQHVYSPVL 59

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
              +L+  SG +  Y  +M    D   + ++  P+       I+RS   SYR LP    +
Sbjct: 60  GKRELYEISGHWSHYSDDMFPPMDLGGEQVVLRPSLCPHHALIYRSRSHSYRELPLRIAE 119

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +   +R EL    G +     +  +      T E                +  LGL    
Sbjct: 120 LGGMYRSELSGVLGGLTRVRAIQLNDAHIFCTLEQVADEARAALDLIRHAYEALGLTPSR 179

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            R      GG                   + D     +       D         E   A
Sbjct: 180 YRLSLPGPGGK---------------YVAAPDLWRRSVALLTEVLDRSGLPYEAAEGEAA 224

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-Q 313
            Y    DV   ++ D       +S   I+                  + G DG  H    
Sbjct: 225 FYGPKIDV---QVTDGAGRESTLSTVQIDFHQP--------ERFDLRYVGPDGARHRPVM 273

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    IG++    A +    +  G   P  +AP ++ ++ I A +     A   +  R +
Sbjct: 274 VHRSIIGSVERAVAHLL---EQHGGALPAWLAPIQLVILPISASE---LPAAVALTRRCA 327

Query: 374 KVGCD--VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            +G    V   D G  +G++  +A L   P Q ++G+K  SD  V ++ R          
Sbjct: 328 DLGLRAQVLGPDRG-SLGARVRLARL--VPYQAVLGAKEASDGHVSLRLRDGHRLGPQPA 384

Query: 432 EEVINYASHRFSNN 445
            +V+       +++
Sbjct: 385 GDVLARVGALVASH 398


>gi|302865324|ref|YP_003833961.1| threonyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|302568183|gb|ADL44385.1| threonyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
          Length = 404

 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 67/433 (15%), Positives = 128/433 (29%), Gaps = 42/433 (9%)

Query: 17  DAEIASHKLMLRTGMIHQ--HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           D       L L    +       G+  WLP G  A   V   +RE + R G   +  P L
Sbjct: 3   DHRRLGRDLELF---VSDPLAGAGLPIWLPAGAAARHAVEEYVRELERRAGYQHVYSPPL 59

Query: 75  QSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
              +L+  SG    +  +M        D   +  P        +FR+  +SYR LP    
Sbjct: 60  GKRELFELSGHLGYFADDMFPPMRLSADDEFVLRPALCPHHALVFRARGRSYRELPLRVA 119

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           ++   +R E     G +     +  +        E       ++          LG++  
Sbjct: 120 ELGGMYRAERSGVLGGLSRVRAISLNDAHNFCALEQVGDEVREILRLIGEAHAALGVRPA 179

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +R                     + +                   D +  +        
Sbjct: 180 GLRLSLRGP---------------DQRYVGDDAGWARAEELLRAALDGVDVVE--APGEA 222

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV- 312
           A Y    D+   ++ D+      +S   ++                 ++  +DG+     
Sbjct: 223 AFYGPKIDI---QIVDAAGRESTISTVQLDF--------DKPERFDLSYTDSDGRRKRPV 271

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    +G+M  + A +   H+G    W   V    + +      D    DA   +  R 
Sbjct: 272 MVHRSLVGSMERLFAYLIEVHEGAFPAWYAPVQLLLLPV------DAAQVDAAVGLARRA 325

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G     D  G  +G++   A     P   ++G +  +D  V ++ R   +   M   
Sbjct: 326 EAAGLRAEVDHAG-SLGARIRDASRRRVPYTGVLGPREAADGSVSLRLRDGRVLAPMPAA 384

Query: 433 EVINYASHRFSNN 445
           E +       ++ 
Sbjct: 385 EALGLIGAVVASR 397


>gi|57640485|ref|YP_182963.1| prolyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
 gi|74503571|sp|Q5JF49|SYP_PYRKO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|57158809|dbj|BAD84739.1| prolyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
          Length = 481

 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 149/413 (36%), Gaps = 67/413 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRL 96
           G+  WLP G K + N+   I  E  RTG  E+  P L    +   E+     +  E+  +
Sbjct: 34  GMNVWLPYGLKIMRNIERFIHAEMERTGHDEVLFPALIPETEFQKEAEHIKGFEGEVYWV 93

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +  D  +I  PT E  M  +F   I+S+ +LPF  YQI   +R E +    ++R 
Sbjct: 94  THAGLEPLDVRLILRPTSETAMYSMFSLWIRSHADLPFKIYQIVNVYRYETKHTRPLIRV 153

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           RE                                                      E   
Sbjct: 154 REI-------------------------------------------------SRFFEAHT 164

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             D+ E      +   D  I      F  +  + S   +W     A   +  E +    P
Sbjct: 165 AHDSYEDA--ERQIKEDLEIFDNLARFLALPYIISKRPEWDKFPGAYYSLGAEVMM---P 219

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           +      R +++G +  +   ++   +  ++   G   YV   ++G+ + R++AAVI   
Sbjct: 220 DG-----RTLQIGTMHNYRQNFAKAYNIQYETETGDHEYVHQTTFGM-SERLLAAVIAIH 273

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCR--DACEKIYARLSKVGCDVFWDDMGEQIGS 390
            D +G++ P ++AP ++ ++ I   D          +I   L   G  V  D+   + G 
Sbjct: 274 GDDRGMVLPPTIAPIQVVIVPIPKKDSEADVFAYAREIAEELRTAGIRVHVDERDIRPGR 333

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++   +L G PL++ VG + V   K  +  R T  +  +  + ++        
Sbjct: 334 KYYDWELKGVPLRIEVGPRDVEGKKAVLARRDTLEKITVERDNIVEEVRKTLD 386


>gi|210616985|ref|ZP_03291320.1| hypothetical protein CLONEX_03542 [Clostridium nexile DSM 1787]
 gi|210149508|gb|EEA80517.1| hypothetical protein CLONEX_03542 [Clostridium nexile DSM 1787]
          Length = 480

 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 72/412 (17%), Positives = 149/412 (36%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRL 96
           G  ++LP G    +N+   +      TG   +S+P L    L  + G   + +  E+  +
Sbjct: 39  GCLNYLPNGYAIWENIQRDLDARFKETGVENVSLPMLIPESLLEKEGDHIEGFAPEVAWV 98

Query: 97  ----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +R  + +   PT E +  D++   ++S+R+LP  + Q     R E   R   +RS
Sbjct: 99  THGGMERLQERLCIRPTSETLFCDLWSKMVRSHRDLPKVWNQWNSVLRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++                                                H    
Sbjct: 158 REFLWQEG-----------------------------------------------HTIHA 170

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             +  E +                  + D I  +  +   +   A        +   ++ 
Sbjct: 171 TYEEAEQRTLTM-----------LKVYQDFIRDSLAIPFVSGRKAENEKFAGAQDTYTV- 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++     +FG  +    +  +   + + H V   S+G+ + R++ A+I   
Sbjct: 219 EALMHDGKALQSATSHFFGNGFPDAFNIKYIDKNNQPHSVYETSWGL-STRIIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP +  +I I  H +   +  +++ A L   G     DD  +  G +F
Sbjct: 278 GDDDGLVLPPRIAPVQTRVIPIAQHKEGVLEKADELLAALKAAGYRAKIDDSEKSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  ++LG P ++ +G K +  ++V +  R T  +  +S++E+          
Sbjct: 338 SEQEILGIPTRIEIGPKDIEKNQVVVVRRDTREKIVVSIDEITTKLGEILET 389


>gi|291535914|emb|CBL09026.1| prolyl-tRNA synthetase, family II [Roseburia intestinalis M50/1]
          Length = 567

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 107/285 (37%), Positives = 147/285 (51%), Gaps = 7/285 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYS-WLPLGQKALDNVNAIIRE 59
           M+  K      +E P D  I SH LM++ G +   + GIYS +LPL ++    +  I+RE
Sbjct: 1   MKLEKLIGERFRERPADCVIDSHALMVKGGYMKYMANGIYSSYLPL-KRITRKIEQILRE 59

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++    E+S P +  A LW ESGRY+S G+E+LR  DRN+  M+ G THEE    + R
Sbjct: 60  EMDKLDGQEVSFPVVMPASLWEESGRYESVGEELLRFTDRNNAKMVLGMTHEEAAVHLVR 119

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + KSY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E     Y K   
Sbjct: 120 EYAKSYNKYPFMIYQIQTKFRDEARPRAGLIRVREFTMKDAYSFHTSQEDLNQYYEKCHK 179

Query: 180 SYLRIFHRLGLKSIPMRA-ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +Y RIF R G+  +   A +SG +GG LSHEF++L   GE  +    +           +
Sbjct: 180 AYERIFERAGIPEVVSVASDSGMMGGSLSHEFMLLTPVGEDSIVLCNECDFRANMEAAEN 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHN-EKLFDSLPENKRVSARGI 282
             DI       E        T D+H  E +     +    S + +
Sbjct: 240 ISDIARDAVSAELEKVH---TPDIHTIEDICKFFGDETCNSCKAV 281



 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/210 (30%), Positives = 103/210 (49%)

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
              N D      L+   +   A Y   +  +   +     +     +RGIEVG+IF  G 
Sbjct: 358 CGANEDEYHYKGLDMQRDVPDAEYHDFAKAYEGGICPKCGKKTIRISRGIEVGNIFQLGD 417

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KY+  M  T+   +G+     MG YGIG  R+ AAV E+ HD  G IWP S+AP+++ L 
Sbjct: 418 KYTRAMKMTYVDQNGESKTPIMGCYGIGVGRLAAAVCEAHHDEYGPIWPKSIAPWQVHLC 477

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            ++A ++  R   + +Y +L ++G +V +DD     G  F+ ADLLG PL+VIV  + + 
Sbjct: 478 AVRADNEEVRKFADDLYEKLQEIGIEVIYDDRTVSAGVMFSDADLLGIPLRVIVSPRNMK 537

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              VE+  R   ++  + +EE         
Sbjct: 538 QGVVEVASRDKTLQTQVKMEEAAEQVKKYL 567


>gi|315652419|ref|ZP_07905407.1| proline--tRNA ligase [Eubacterium saburreum DSM 3986]
 gi|315485318|gb|EFU75712.1| proline--tRNA ligase [Eubacterium saburreum DSM 3986]
          Length = 479

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 89/412 (21%), Positives = 155/412 (37%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   I      TG     +P      L   E+   + +  E+  +
Sbjct: 39  GCLVIRPAGYAIWENMKNEIDRRFKETGIENCYLPMFIPESLLQKEADHVEGFAPEVAWV 98

Query: 97  ----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                ++ D+ +   PT E +  D +   +KSYR+LP    Q     R E   R  + RS
Sbjct: 99  TYGGMEKLDERLCVRPTSETLFCDYYAGAVKSYRDLPQLLNQWCSVVRWEKTTRPFL-RS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T + +     +M   Y   F +                         
Sbjct: 158 REFLWQEGHTVHATAKEAHDRTVQMLDVYADFFEK------------------------- 192

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                           D  IP        I  + +  E++    A  +            
Sbjct: 193 ----------------DLAIPV-------IKGVKTEKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   YFG  ++   + TF   D +   V   S+G+   R++ AVI   
Sbjct: 219 EALMHDGKALQSGTSHYFGDGFAKAFNVTFTDKDNQVKPVFETSFGM-TTRIIGAVIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+  P  +AP ++++I + AH +   DA   +Y RL   G  V  D+  +  G +F
Sbjct: 278 GDNSGLKLPPHIAPVQVNIIPVAAHKEGVLDAANTLYDRLKVAGLRVKLDNSEKSPGFKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A +++ G PL++ +G K + +++     R TG +  +SL+ V   A     N
Sbjct: 338 AESEMRGIPLRIEIGPKDIENNQCVFVRRDTGEKSFVSLDNVEGDAKDCLEN 389


>gi|315230490|ref|YP_004070926.1| prolyl-tRNA synthetase [Thermococcus barophilus MP]
 gi|315183518|gb|ADT83703.1| prolyl-tRNA synthetase [Thermococcus barophilus MP]
          Length = 480

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 84/413 (20%), Positives = 149/413 (36%), Gaps = 67/413 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRL 96
           G+  WLP G + + N+   I EE  RTG  E+  P L    +   E+     +  E+  +
Sbjct: 34  GMNIWLPYGLRIMRNIEKFIHEEMERTGHQEVLFPALIPETEFQKEAEHIAGFEGEVFWV 93

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D  D  +I  PT E  M  +F   I+S+ +LPF  YQI   +R            
Sbjct: 94  THAGHDPLDVRLILRPTSETAMYSMFALWIRSHADLPFKIYQIVNVYR------------ 141

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
                    +    P       ++ F                            +H    
Sbjct: 142 -------YETKHTRPLIRVREISRFFE---------------------------AHTAHD 167

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             +  E Q+    +  D         +     + S   +W     A   +  E +    P
Sbjct: 168 SFEDAERQIKEDLEIFDNLAKKLALPY-----IVSKRPEWDKFPGAYYSLGAEVVM---P 219

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           +      R +++G +  +   ++   +  ++  DG   YV   +YG+ + R++AAVI   
Sbjct: 220 DG-----RTLQIGTMHNYKQNFAKAYNIMYEKEDGTHEYVHQTTYGM-SERLLAAVIAVH 273

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            D +G++ P ++AP ++ ++ I   D          +I   L   G  V  D+   + G 
Sbjct: 274 GDDRGMVLPPTIAPIQVVIVPIPKKDSPYDVFAYAREIAEELKTAGIRVHVDERDIRPGR 333

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +F   +L G PL++ VG + V   K  +  R T  +  +   E+I        
Sbjct: 334 KFYDWELKGVPLRIEVGPRDVEGQKAVLARRDTLEKFTVERAELIEKVRETLD 386


>gi|219520186|gb|AAI43944.1| TARSL2 protein [Homo sapiens]
          Length = 766

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/406 (16%), Positives = 133/406 (32%), Gaps = 40/406 (9%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  + +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 385 KMMRDWEKFQEEAKNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLTDFIREE 442

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y + M       D      P +      +F  
Sbjct: 443 YHKRDFTEVLSPNMYNSKLWEASGHWQHYSENMFTFEIEKDT-FALKPMNCPGHCLMFAH 501

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 502 RPRSWREMPIRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLQ 560

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  +          
Sbjct: 561 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEIEMWNEAEKQLQNSL 602

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            D      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 603 MDFGEPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTYV 655

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +     D K   V +    +G++  + A++    +  G  WP  ++P ++ +I +     
Sbjct: 656 SK--DGDDKKRPVIIHRAILGSVERMIAILS---ENYGGKWPFWLSPRQVMVIPVGP--- 707

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
            C     ++ +   + G     D D    +  +   A L  +   +
Sbjct: 708 TCEKYALQVSSEFFEEGFMADVDLDHSCTLNKKIRNAQLAQYNFIL 753


>gi|229159541|ref|ZP_04287556.1| Prolyl-tRNA synthetase 2 [Bacillus cereus R309803]
 gi|228623946|gb|EEK80757.1| Prolyl-tRNA synthetase 2 [Bacillus cereus R309803]
          Length = 502

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/412 (19%), Positives = 149/412 (36%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 63  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 122

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R   +R+
Sbjct: 123 THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP-FLRT 181

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 182 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 210

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + TD +             A Y   S +H+        
Sbjct: 211 -------ASFCEDYLAIPVIKGQKTDKEKFAGAK-------ATYTIESLMHD-------- 248

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 249 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 301

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +   +   ++  R+  V   V  D   +  G +F
Sbjct: 302 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLEKATELQGRIQNV-ARVKVDVSNKTPGWKF 360

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 361 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPSLLEE 412


>gi|325845496|ref|ZP_08168787.1| proline--tRNA ligase [Turicibacter sp. HGF1]
 gi|325488515|gb|EGC90933.1| proline--tRNA ligase [Turicibacter sp. HGF1]
          Length = 476

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 154/417 (36%), Gaps = 67/417 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   + ++   TG   + +P L    L   E+   + +  E+  +
Sbjct: 37  GCMIIRPYGYAIWENIQQYLDQKFKETGHENVYMPMLIPESLLQKEADHVEGFAPEVAWV 96

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               ++ +       PT E +  D +   I+SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGNEKLSERLVVRPTSETLFCDHYSKIIQSYNDLPKKYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++     M  +Y                        +  EF+ 
Sbjct: 156 TEFLWQEGHTVHATAEEAEEETLLMLNTY----------------------AKMCEEFLA 193

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        +    +  E++    A  +            
Sbjct: 194 --------------------------IPVLKGQKTEKEKFAGAQATYT-----------I 216

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FGT ++      +   + K  Y    S+G+   R++ A+I   
Sbjct: 217 ESLMHDGKALQSGTSHNFGTGFAKAFDIKYSDKNSKMQYAHQTSWGV-TTRLIGAIIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ +I I AH +   +   ++  RL+ V   V  D   +  G +F
Sbjct: 276 GDSSGLVLPPRVAPTQVMIIPIAAHKEGVIEKACELQTRLASV-ARVKCDTSDKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  ++ G P++V +G K + +++  +  R T  +  +SL+++         + +  L
Sbjct: 335 SEYEMKGIPVRVEIGPKDIENNQAVLVRRDTREKIIVSLDDLETKVVELLEDIQQSL 391


>gi|322657153|gb|EFY53436.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322686288|gb|EFY82272.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
          Length = 290

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 101 VVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 160

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 161 CYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 220

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   ++
Sbjct: 221 QGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDI 280

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 281 VDYLVKAIK 289


>gi|289830169|ref|ZP_06547591.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
          Length = 290

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 101 VVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 160

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 161 CYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 220

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   ++
Sbjct: 221 QGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDI 280

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 281 VDYLVKAIK 289


>gi|126697616|ref|YP_001086513.1| prolyl-tRNA synthetase [Clostridium difficile 630]
 gi|255099208|ref|ZP_05328185.1| prolyl-tRNA synthetase [Clostridium difficile QCD-63q42]
 gi|255304991|ref|ZP_05349163.1| prolyl-tRNA synthetase [Clostridium difficile ATCC 43255]
 gi|122974211|sp|Q18CD7|SYP2_CLOD6 RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|115249053|emb|CAJ66864.1| Prolyl-tRNA synthetase [Clostridium difficile]
          Length = 481

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/406 (17%), Positives = 144/406 (35%), Gaps = 67/406 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD---- 98
           P G    + +   + ++   TG      P L    L   E+   + +  E+  +      
Sbjct: 46  PYGYALWEKMQEFMDKKFKETGHKNCYFPLLIPESLLNKEAEHVEGFAPEVAWVTHGGNK 105

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           + ++ +   PT E ++  ++   +KSYR LP+ + Q     R E   R  + R+ EFL +
Sbjct: 106 KLEERLCVRPTSETIICTMYAKWLKSYRELPYLYNQWCSVVRWEKSTRPFL-RTSEFLWQ 164

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T E ++    +    Y                                     
Sbjct: 165 EGHTLHETAEEAQEETIQQLEVYK------------------------------------ 188

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                        +  E      +    S  E++       +            E     
Sbjct: 189 ------------ALCEELLAMPVVAGQKSESEKFAGGERTYT-----------IEAMMHD 225

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   +G        S+G  + R++  +I +  D +G+
Sbjct: 226 GKALQSGTSHFLGQHFTKAFDITFADREGNLANPYHTSWGA-STRLIGGLIMTHSDNRGL 284

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           + P  VAP ++ ++ I A      +  +KIYA L   G  V  DD      G +F   ++
Sbjct: 285 VLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLKAKGVAVEVDDRDNYTTGWKFNEWEM 344

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G P++V +G K + +++  +  R T  ++ M LE + +     F 
Sbjct: 345 KGVPVRVEIGPKDIENNQAMVFRRDTLEKDSMPLEGLADAICDLFD 390


>gi|255654137|ref|ZP_05399546.1| prolyl-tRNA synthetase [Clostridium difficile QCD-23m63]
          Length = 481

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/406 (17%), Positives = 144/406 (35%), Gaps = 67/406 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD---- 98
           P G    + +   + ++   TG      P L    L   E+   + +  E+  +      
Sbjct: 46  PYGYALWEKMQEFMDKKFKETGHKNCYFPLLIPESLLNKEAEHVEGFAPEVAWVTHGGNK 105

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           + ++ +   PT E ++  ++   +KSYR LP+ + Q     R E   R  + R+ EFL +
Sbjct: 106 KLEERLCVRPTSETIICTMYAKWLKSYRELPYLYNQWCSVVRWEKSTRPFL-RTSEFLWQ 164

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T E ++    +    Y                                     
Sbjct: 165 EGHTLHETAEEAQEETIQQLEVYK------------------------------------ 188

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                        +  E      +    S  E++       +            E     
Sbjct: 189 ------------ALCEELLAMPVVAGQKSESEKFAGGERTYT-----------IEAMMHD 225

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   +G        S+G  + R++  +I +  D +G+
Sbjct: 226 GKALQSGTSHFLGQHFTKAFDITFADREGNLANPYHTSWGA-STRLIGGLIMTHSDNRGL 284

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           + P  VAP ++ ++ I A      +  +KIYA L   G  V  DD      G +F   ++
Sbjct: 285 VLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLKAKGVAVEVDDRDNYTTGWKFNEWEM 344

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G P+++ +G K + +++  +  R T  ++ M LE + +     F 
Sbjct: 345 KGVPVRIEIGPKDIENNQAMVFRRDTLEKDSMPLEGLADAVCDLFD 390


>gi|256371437|ref|YP_003109261.1| prolyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008021|gb|ACU53588.1| prolyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 572

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 94/227 (41%), Positives = 147/227 (64%), Gaps = 1/227 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S       +E+PRDAE+ASH+L++R G +   + G++S LPLG + L+ + AI+ EE
Sbjct: 1   MRASDLVFATQREDPRDAEVASHRLLVRGGYMRALASGVWSLLPLGFRVLERIGAIVAEE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  ++ +P L   +LW E+GR  +    ++R+  +   +++ GPTHEE +      
Sbjct: 61  FDRAGGNQLLLPALHPVELWQETGRNVTMDDVLMRVDSKLG-SLVLGPTHEEAVIAAVGP 119

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR+LP   YQIQ KFRDE R RFG+MR+REF+M D Y+FD+  E  + SY +++ +
Sbjct: 120 DLASYRSLPAFVYQIQTKFRDEPRARFGLMRTREFVMADGYTFDVDREHMRVSYQRVYEA 179

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           YLR++ RLGLK++P+ A++G IGGD++HEF+V +  GE      +  
Sbjct: 180 YLRVYRRLGLKAVPVEADAGAIGGDVNHEFMVPSAIGEDHFASCRAC 226



 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 4/186 (2%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGT-KYSLPMSATFKGADGKDHYVQMG 315
             +V      D  P         R +EVGH F  G    S     TF G DG  H   MG
Sbjct: 379 WIEVVEVVDGDPCPRCGAPLALVRAVEVGHTFQLGQLYSSRMSRGTFVGEDGATHPFWMG 438

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            YGIG  R++A + E      G+ WP  +APF+++++   + D V   A   I   L ++
Sbjct: 439 CYGIGVSRLIAVIAEEYQRDGGLAWPLEIAPFQVAVVPAGSSDDVAATAAN-IAEELERM 497

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  +D G   G      +L+G PL V+VG++ ++  +VE+++R+ G    + L +V 
Sbjct: 498 GRRVLLEDRGLSFGVAARDQELVGAPLWVVVGARSLARGEVELRNRVDGRTLTVQLRDVA 557

Query: 436 NYASHR 441
                 
Sbjct: 558 QAVDAE 563


>gi|213645917|ref|ZP_03375970.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 249

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 60  VVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 119

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 120 CYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 179

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   ++
Sbjct: 180 QGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDI 239

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 240 VDYLVKAIK 248


>gi|153854756|ref|ZP_01995990.1| hypothetical protein DORLON_01988 [Dorea longicatena DSM 13814]
 gi|149752663|gb|EDM62594.1| hypothetical protein DORLON_01988 [Dorea longicatena DSM 13814]
          Length = 479

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/415 (19%), Positives = 147/415 (35%), Gaps = 66/415 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  ++LP G    + + A +      TG   + +P L    L   E+   + +  E+  +
Sbjct: 38  GCMNYLPNGYAIWELIQADLDRRFKETGVENVYLPVLIPESLLEKEADHVEGFAPEVAWV 97

Query: 97  ----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +R  + +   PT E +  D++   +KSYR+LP  + Q     R E   R  + RS
Sbjct: 98  THGGMERLQERLCVRPTSETLFCDLWAKTVKSYRDLPKVWNQWNSVLRWEKTTRPFL-RS 156

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++    +M                                   
Sbjct: 157 REFLWQEGHTLHATYEEAEERTIQM----------------------------------- 181

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                E    C K+ M  P  +      +                A      E L     
Sbjct: 182 ----WEVYKDCYKETMAIPFVAGRKAEHE------------KFAGAEDTYTIEALMH--- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++     +FG  +       +   + + H     S+G  + R + A+I   
Sbjct: 223 -----DGKALQSATSHFFGNGFPDAFGIKYVDKNNELHSAYETSWGW-STRSIGALIMVH 276

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP +  +I I  H +   D    +   L K G  V  DD  +  G +F
Sbjct: 277 GDDDGLVLPPHVAPVECRIIPIAQHKEGVLDRSYALLDELKKAGYRVKIDDSDKSTGWKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +  ++LG P ++ +G K +  ++V +  R    +  +SL+E+           + 
Sbjct: 337 SEQEILGIPTRIEIGPKDIEKNQVVVVRRDNREKIVVSLDEIAVKLREILEQEQQ 391


>gi|240103108|ref|YP_002959417.1| prolyl-tRNA synthetase [Thermococcus gammatolerans EJ3]
 gi|239910662|gb|ACS33553.1| Prolyl-tRNA synthetase (proS) [Thermococcus gammatolerans EJ3]
          Length = 483

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/429 (19%), Positives = 157/429 (36%), Gaps = 69/429 (16%)

Query: 24  KLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLW 80
           +L+   G+I +     G+  WLP G K + N+   I  E  RTG  E+  P L    +  
Sbjct: 19  ELLETAGIIDKRYPVKGMNVWLPYGLKIMRNIEKFIHSEMARTGHEEVLFPALIPETEFQ 78

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E+     +  E+  +     D  D  +I  PT E  M  +F   I+S+ +LPF  YQI 
Sbjct: 79  KEAEHIKGFEDEVYWVTHAGLDPLDVRLILRPTSETAMYSMFSLWIRSHADLPFKVYQIV 138

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             +R E +                      P       ++ F                  
Sbjct: 139 NVYRYETK-------------------HTRPLIRVREISRFFE----------------- 162

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                     +H   V  +  E Q+    +  D         +  I       +   A Y
Sbjct: 163 ----------AHTAHVDFEDAERQIKEDLEIFDRLAKFLALPY-VISRRPDWDKFPGAFY 211

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           +  +++        +P+      R +++G +  +   ++   +  ++   G   YV   +
Sbjct: 212 SLGAEIM-------MPDG-----RTLQIGTMHNYKQNFAKAYNIQYETETGDHEYVHQTT 259

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR--DACEKIYARLSK 374
           +G+ + R++AAVI    D  G++ P ++AP ++ ++ I   D          +I   L K
Sbjct: 260 FGM-SERLLAAVIAVHGDDSGMVLPPTIAPIQVVIVPIPKKDANVDVFAYAREIAEELGK 318

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V  D+   + G ++   +L G PL++ VG + V   K  +  R T  +  +  + +
Sbjct: 319 AGFRVHVDERDIRPGRKYYDWELKGVPLRIEVGPRDVEGRKAVLARRDTFEKVTVERDAI 378

Query: 435 INYASHRFS 443
           +        
Sbjct: 379 VEEVKKTLD 387


>gi|42523294|ref|NP_968674.1| hypothetical protein Bd1807 [Bdellovibrio bacteriovorus HD100]
 gi|39575499|emb|CAE79667.1| thrS [Bdellovibrio bacteriovorus HD100]
          Length = 416

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/435 (15%), Positives = 130/435 (29%), Gaps = 38/435 (8%)

Query: 16  RDAEIASHKLMLRTGMIHQ---HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           +D      +L       H       G+  WLP G    D +  + RE +   G   +  P
Sbjct: 16  KDHR----ELNQYLSYFHSDESIGAGLPLWLPAGVVIRDELEKLARELEFLAGYQRVVSP 71

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L   DL+ +SG    Y   M    D  +      P        IF + + SYR LP   
Sbjct: 72  HLAKEDLYHQSGHLPYYEDSMYPSMDLENVRYRLRPMCCPHHHKIFSAKLHSYRELPLRL 131

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
            +    +R E       +     L ++     +     K   +K+   Y + +  LG+  
Sbjct: 132 AEYGQVYRYEGSGALSGLMRVRGLCQNDAHLYVRQNQVKVEIHKVLEMYQKAYRILGISD 191

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             +R   G    + S +++                 D+          +           
Sbjct: 192 YRLRLSRGVEAEEASQKYVAN------------PLWDWAEGILREVLVESGLPFFEAPGE 239

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    DV    +               E           +     +F   +G     
Sbjct: 240 AAFYGPKIDVQIMSV-----------HGKEESASTVQVDFISAERFDLSFINEEGHKERP 288

Query: 313 -QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +    +G+   + A++   + G   +W           + I       ++A E +   
Sbjct: 289 VILHRAPLGSHERMVALLIELYQGAFPLW------LSPEQVRIVPLADRHQEAAEGLRLL 342

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L      V  DD  E +  + A          V++G K +   K  ++ R    +  +S 
Sbjct: 343 LHNSFIRVRVDDRAESLSRKMAECWQEKVHSVVVIGDKELQAGKFSLQRRGASAQ-SVSA 401

Query: 432 EEVINYASHRFSNNR 446
           +E+++   +   + +
Sbjct: 402 QELLSLLQNEIRDRK 416


>gi|188585074|ref|YP_001916619.1| prolyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|259511608|sp|B2A5T8|SYP_NATTJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|179349761|gb|ACB84031.1| prolyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 483

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 141/415 (33%), Gaps = 70/415 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P      L   E+   + +  E+  +
Sbjct: 40  GCMVIRPYGYAIWEKMKEGLDRRIKETGHENAYFPLFIPESLLQKEADHVEGFAPEVAWI 99

Query: 97  ADRNDKAMIY----GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  +++   I+S+R+LP    Q     R E       +R+
Sbjct: 100 TKGGDEELSESLAVRPTSEAMFGEMYSDWIQSWRDLPVLINQWANVVRWEKS-TKPFLRT 158

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M   Y                               
Sbjct: 159 SEFLWQEGHTAHRTEEDAEEEALQMLDVYKDFVE-------------------------- 192

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                           D  IP  N        L S  E++              L     
Sbjct: 193 ---------------NDMAIPVLN-------GLKSEKEKFAG-----------ALRTFCI 219

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      R ++ G     G  ++     TF   D +  YV   S+G+ + R++ A+I   
Sbjct: 220 EALMSDGRALQAGTSHNLGQHFAKVFDITFLDQDDERKYVWQTSWGV-STRLIGALIMVH 278

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGE-QIG 389
            D +G+  P  VAP ++ ++ I      +   +  +K+Y  L      V  D+  E   G
Sbjct: 279 GDNRGLKIPPKVAPHQLVMVPITPKKQREQVLEESDKLYQELKDK-FRVKLDNREEHTPG 337

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +F   ++ G P+++ +G K +   +V +  R T  +  +  +E+I+       +
Sbjct: 338 WKFNEWEMKGVPIRLEIGPKDIEKDQVVLVRRDTDEKMFVKRDELIDKLEELIED 392


>gi|322707504|gb|EFY99082.1| threonyl-tRNA synthetase [Metarhizium anisopliae ARSEF 23]
          Length = 563

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 83/474 (17%), Positives = 150/474 (31%), Gaps = 86/474 (18%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y     +  P D      +  L   +   +S G   +LP G +  + +   IR++  R 
Sbjct: 101 QYSQKPEKREPPDHRKIGLQQELF--ITSAYSPGSPIFLPNGARIFNRLIDFIRKQYARY 158

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN------------------------ 100
           G  E+  PT+    LW +SG  ++Y  +M  +                            
Sbjct: 159 GFQEVITPTIYKKALWAKSGHLENYADDMYTVTGNTSTPDKDGGGCCGGDHGPAEPDLEA 218

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKD 159
           D      P +      IF S + SYR LP  +       R+E+     G+ R R F   D
Sbjct: 219 DNEYGLKPMNCPGHCLIFASRVHSYRELPVRYADFSPLHRNEISGALSGLTRVRRFHQDD 278

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            + F   P   +    K       ++  L L      A S                    
Sbjct: 279 GHIFCR-PSQVEEEIKKTLDFVKVVYGVLRLGVGYRLALSTRPKDHF------------- 324

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
               ++D  +          D      SI E   A Y    D+    + DS  +  + + 
Sbjct: 325 --IGTEDEWNRAEDRLKMALDSSGMEWSINEGDGAFYGPKIDI---VIKDSDGKEHQTAT 379

Query: 280 RGIEVGHIFYFGTKYSLPMSA---------------TFKGADGKDHYVQMGSYGIGAMRV 324
             ++    F    +++L   A                     G    V +    +G++  
Sbjct: 380 IQLD----FQLPKRFALEYQAPAPEYEARGETTNDPVLLAEYGPVRPVMIHRAVLGSVER 435

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL----SKV----- 375
           + A++  S+D     WP  + P +  ++ +        D  +++   L     +      
Sbjct: 436 LMALLIESYD---GKWPFWLNPRQAIILTVNTSRP-VLDWADEVKEILLGLKKEAGQTST 491

Query: 376 -------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI-KHR 421
                  G  V  D     +GS+   A + G+   ++VG + V   +V + K R
Sbjct: 492 EGPVNPTGLAVDVDYSARSLGSKIREARINGYSQILVVGEEDVKHGQVSLGKER 545


>gi|159042526|ref|YP_001541778.1| prolyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
 gi|259511577|sp|A8MC04|SYP_CALMQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|157921361|gb|ABW02788.1| prolyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
          Length = 481

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 89/432 (20%), Positives = 159/432 (36%), Gaps = 74/432 (17%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           DAE+  ++  ++         G Y W P G     NV A+IR   + TG  E+  P    
Sbjct: 26  DAEVYDYRYPVK---------GAYIWRPYGVAIRRNVEALIRRLHDETGHQEVLFPVFIP 76

Query: 77  ADLW-VESGRYDSYGKEMLRLADRNDKA--MIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + +  ES     +  E+  ++        ++  PT E  M  +F+  I+ + +LP   Y
Sbjct: 77  YEFFSKESEHIRGFESEVFWVSKGTGGEERLVLRPTSETAMMPMFKLWIRDHTDLPLRVY 136

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           QI   FR E +    ++                                    RL   S+
Sbjct: 137 QIVSVFRAETKMTHPMI------------------------------------RLREISM 160

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
              A +     D +          E      +   +  IP   +   D          W 
Sbjct: 161 FKEAHTAHADRDDAER-----QVKEAVGIYRRIMDELCIPYLISRRPD----------WD 205

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
               A   +  + +    P+      R +++G + Y G  +S      + G DG+ HY+ 
Sbjct: 206 KFAGAVYTIAFDTIM---PDG-----RTMQIGTVHYLGENFSRVFDVKYLGKDGQMHYIH 257

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARL 372
             SYGI + R++A++I  + D +G++ P   AP ++ +I I    DQ   +  + +   L
Sbjct: 258 TTSYGI-SERIIASMIAVNGDDRGLLLPPRYAPIQVVVIPIMYGEDQSVLNYAKGVSGEL 316

Query: 373 SKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
              G  V  DD   +  G ++   +L G P+++ VG   V D+ V +  R T  +  +  
Sbjct: 317 LNAGVRVHVDDRRDKTPGWKYYHWELKGVPIRLEVGPSDVKDNAVTLTRRDTFEKYAVER 376

Query: 432 EEVINYASHRFS 443
             V++       
Sbjct: 377 SNVVDAVRELMK 388


>gi|327311077|ref|YP_004337974.1| prolyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
 gi|326947556|gb|AEA12662.1| prolyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
          Length = 491

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/433 (18%), Positives = 140/433 (32%), Gaps = 75/433 (17%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R+AEI           I    KG + W P G K   NV A+IRE  + TG  E+  P   
Sbjct: 32  REAEIYD---------IRYPVKGAFVWRPYGMKIRRNVEAVIRELHDSTGHQEVLFPVFI 82

Query: 76  SADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             + +  ES     +  E+                 E                       
Sbjct: 83  PYEFFSKESQHIRGFESEV----------FWVSKGGEAG--------------------- 111

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
                  E         +    M   +  D                     +++      
Sbjct: 112 -------ERLILRPTSETAMMPMFKLWIQDHRDLP-------------LAVYQIVSVFRA 151

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN--SIVEQW 252
               + P+           A T       ++  +   +      FD +      S   +W
Sbjct: 152 ETKMTNPMIRVREISMFKEAHTAHADREDAERQVRLAVDIYKKIFDKMCIPYLISQRPEW 211

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                A   +  + +   LP+      R +++G + Y GT +S     T+   DG   YV
Sbjct: 212 DKFAGAVYTIAFDTI---LPDG-----RTLQIGTVHYLGTNFSKVFEVTYLRPDGSHEYV 263

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYA 370
              SYGI + R +AA++    D  G   P ++AP +  ++ I   ++     +A   +  
Sbjct: 264 HTTSYGI-SERSIAAMLIIHGDDAGTTIPPALAPIQAVVVPIIYGEERKAVMEAASSVAE 322

Query: 371 RLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           RL   G  V  DD   +  G +F   +L G PL++ +G + V    V +  R T  +  +
Sbjct: 323 RLRASGVRVHIDDREDKTPGWKFYYWELKGVPLRIEIGKRDVEQRSVVLARRDTLEKYSV 382

Query: 430 SLEEVINYASHRF 442
            L+E+ +      
Sbjct: 383 GLDELEDAVKKLL 395


>gi|160943086|ref|ZP_02090323.1| hypothetical protein FAEPRAM212_00565 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445555|gb|EDP22558.1| hypothetical protein FAEPRAM212_00565 [Faecalibacterium prausnitzii
           M21/2]
 gi|295104698|emb|CBL02242.1| prolyl-tRNA synthetase [Faecalibacterium prausnitzii SL3/3]
          Length = 479

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 88/417 (21%), Positives = 159/417 (38%), Gaps = 67/417 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLRL 96
           G     P GQ   + +   +      TG   +++P L    L  + G   + +  E+  +
Sbjct: 40  GFIILRPYGQAIWELIQKDLDARFKATGHENVAMPVLIPESLLQKEGELVNGFAPEVAWV 99

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D+ ++ +   PT E +  D +   + SYR LP  + Q     R E   R  + RS
Sbjct: 100 TMGGSDKLEERLAVRPTSETMFCDHWSRVLHSYRELPMKYNQWCSVVRWEKTTRPFL-RS 158

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REF  ++ ++   T   ++    +    Y                               
Sbjct: 159 REFWWQEGHTIHETAAEAEAETQQQLNCY------------------------------- 187

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            ADT E          D  IP        +    +  E++    A  +            
Sbjct: 188 -ADTCEQ---------DLAIPV-------VKGRKTDKEKFAGAEATYT-----------I 219

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   YFG K+S     TF G D + H+    S+G+ + R+V A+I + 
Sbjct: 220 EAMMKDGKALQSGTSHYFGDKFSKAYDVTFTGRDNQLHHPFQTSWGV-STRLVGAIIMTH 278

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+I P ++AP ++ ++ I AH     +   ++  ++SK    V  DD     G +F
Sbjct: 279 GDDDGLILPPAIAPIQVVVVPIAAHKPGVSEKAAELAEKISKY-ARVKLDDSDNAPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           A  ++ G PL++ +G K +  ++  +  R T  +  +SL+E+      +    R  L
Sbjct: 338 AQWEMKGVPLRLEIGPKDLEKNQCVLVRRDTREKVFVSLDELETAIPAQLEALRKDL 394


>gi|71418959|ref|XP_811024.1| threonyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70875641|gb|EAN89173.1| threonyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 816

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 83/524 (15%), Positives = 145/524 (27%), Gaps = 99/524 (18%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +  L     H+ S G   WLP G +  + +    R++  R G  E+  
Sbjct: 298 EAARRDHRNIGRQQQLFG--FHEVSPGSAFWLPHGARIYNALVEFQRKQYRRRGFEEVVS 355

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + S+ LW+ SG +D Y   M R+    +      P +      ++     SY+ LP  
Sbjct: 356 PNMFSSKLWMVSGHWDKYADNMFRIVVEKE-DHGMKPMNCPGHCIMYAMQQHSYKELPIR 414

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           +    +  R+EL     G+ R R F   DA+ F    +  +       V    ++  LG 
Sbjct: 415 YADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRMDQVQEE-IRGALVFLDDVYRTLGF 473

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP----------------- 233
           K     A + P     + E    A+        S   +   +P                 
Sbjct: 474 KFFLKHA-TRPENKLGTEEMWDQAEAYLRAALNSFCGIPEHLPDPFKEGATFTFDGRRDT 532

Query: 234 --------------------SENTDFDDIISLNSIVEQW------TAPYAATSDVHNEKL 267
                                +  + DD     +  E W       A Y    D+    +
Sbjct: 533 VKKLRALLKKQAANRENKDTEKKEEKDDEWKGPTHAEAWEENTGDGAFYGPKIDI---VV 589

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG------------ 315
            D+L    + +   ++      FG KY+LP S T +G  G +                  
Sbjct: 590 EDALRRRHQCATVQLDFNLPQRFGLKYTLPTS-TVEGGAGAEAKEHHTDPNAPNVGTDAT 648

Query: 316 ---------------------------------SYGIGAMRVVAAVIESSHDGKGIIWPD 342
                                            +  +   R +   +E         +  
Sbjct: 649 TTEGKPEAGDECLSSYEKAARELCIDRRLDANQARPVMIHRAIFGSLERCIAILCEHYGG 708

Query: 343 SVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
               +      I             K+       G     D     +  +   A++  + 
Sbjct: 709 EWPLWLSPRQVIVIPVSAENTAYATKVRDAFYADGFHADVDSGNATLDKKIRNAEVARYN 768

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              +VG        V ++ R        SL EV  +        
Sbjct: 769 FIFVVGQVEEEAQTVNVRTRDNRRHGTKSLAEVQRWLRELVDTY 812


>gi|73667729|ref|YP_303744.1| prolyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
 gi|114152210|sp|Q46G28|SYP_METBF RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|72394891|gb|AAZ69164.1| prolyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
          Length = 480

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 89/420 (21%), Positives = 159/420 (37%), Gaps = 69/420 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG+Y W P G     N   IIRE  + +G  E   P L    +   E+     + 
Sbjct: 32  VRYPVKGLYVWYPFGFAIRRNTYNIIREILDNSGHQEALFPLLIPENEFMKEAEHIKGFE 91

Query: 91  KEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            E+  +     D  D  +   PT E  +  +++  ++S+ + P   YQI   FR E +  
Sbjct: 92  DEVYWVTHGGRDTLDIPLALRPTSETAIYPMYKMWVRSHADFPIKIYQIVNTFRYETKHT 151

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
             ++R RE                                                    
Sbjct: 152 RPLIRLREITSF----------------------------------------------KE 165

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           +H      +  E QV          + +E      +  L S    W     A    + + 
Sbjct: 166 AHTVHATWEDAEAQV-----KEAIGLYTEIYRRLGVPVLRSRRPDWDKFPGAD---YTDA 217

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           L   +P+      R +++G   + G  ++      ++  DG+  Y     YGI + R +A
Sbjct: 218 LDAIMPDG-----RTLQIGTAHHLGDNFAKTFDIKYETPDGEQRYAYQTCYGI-SERSIA 271

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           A I    D KG++ P  +AP ++ +I I  K   +    AC+ +  RL+K G  V  D  
Sbjct: 272 ATISIHGDDKGLVLPPEIAPVQVVIIPIIFKKGAEEVLAACKDVKERLTKAGIRVEIDAS 331

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRFS 443
             + G+++   ++ G PL++ +G + + ++  V ++ R TG +E +SL E+    S +F 
Sbjct: 332 DLRPGAKYYKWEMKGVPLRLEIGPRDLQNNVAVAVR-RDTGEKEQISLPEIEAGVSSKFE 390


>gi|304314752|ref|YP_003849899.1| prolyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588211|gb|ADL58586.1| prolyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 465

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 91/451 (20%), Positives = 168/451 (37%), Gaps = 85/451 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  IL+E    AEI   +  ++         G++ W+P G +   N   I++   +
Sbjct: 4   FSEWFHNILEE----AEIIDQRYPVK---------GMHVWMPHGFRIRKNTLNILKRILD 50

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
           R    E+  P L    +L  E+     +  E+  +      +  + +   PT E VM  +
Sbjct: 51  R-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPM 109

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   ++S+ +LP  FYQI   FR E +    ++R RE                       
Sbjct: 110 FALWVRSHTDLPMRFYQIVNTFRYETKHTRPLIRVREITTF------------------- 150

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                        +H     AD  E QV       +  I     
Sbjct: 151 ---------------------------KEAHTIHATADEAEEQV-------ERAIEIYRE 176

Query: 238 DFDDIISLNSIVEQ--WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
            FD +     I ++  W     +   +  + L    P+ K      +++G +   G  ++
Sbjct: 177 FFDSLGIPYLITKRPPWDKFPGSDYTMAFDTLM---PDGK-----TLQIGTVHNLGQTFA 228

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI- 354
                 F+  +G+  YV    YG+ + RV+A+VI    D  G+  P  VA  ++ ++ + 
Sbjct: 229 RTFEIKFENPEGEHEYVHQTCYGL-SDRVIASVIAVHGDESGLCLPPEVAAHQVVIVPVI 287

Query: 355 -KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
            K       +AC  +   L   G  V  DD   + G ++   ++ G PL+V +G + + +
Sbjct: 288 FKKAADEVMEACRDLRDSLGDAGFRVHLDDRDLRAGRKYYEWEMRGVPLRVEIGPRDLEN 347

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +   I  R TG +    L+ + +      ++
Sbjct: 348 NSAVISRRDTGEKITADLDGIQDTLRDLMND 378


>gi|238916041|ref|YP_002929558.1| prolyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
 gi|259511595|sp|C4Z1D7|SYP_EUBE2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|238871401|gb|ACR71111.1| prolyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
          Length = 479

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 143/412 (34%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   + P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMIFKPAGYAIWENIKNEMDRRFKETGVENVYLPMFIPESLLEVEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +   + M   PT E +  D ++  I+SYR+LP  + Q     R E   R   +RS
Sbjct: 99  TYGGLNPLQERMCVRPTSETLFCDFYKDEIQSYRDLPKVYNQWCSVVRWEKETRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++    +M   Y                               
Sbjct: 158 REFLWQEGHTAHATAEEAEARTQQMLNLYADFCE-------------------------- 191

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                 E      I    +  E++    A  +            
Sbjct: 192 ----------------------EVLAIPVIKGRKTDKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG  ++      +   D K  YV   S+G    R++ AVI + 
Sbjct: 219 EALMHDGKALQSGTSHNFGDGFAKAFGIQYTDKDNKLKYVHQTSWGT-TTRLIGAVIMTH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ +I I        D   ++   L   G  V  DD  +  G +F
Sbjct: 278 GDDSGLVLPPKVAPVQVDVIPIMQKKAGVLDKAYEVGQALKAAGLRVKVDDSDKNPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  ++ G P++V +G + +  ++  I  R T  +  +S++E+ +        
Sbjct: 338 SEQEMRGIPVRVEMGPRDIEANQAVIVRRDTREKITVSIDELADRIPEILDT 389


>gi|84999652|ref|XP_954547.1| prolyl-trna synthetase [Theileria annulata]
 gi|65305545|emb|CAI73870.1| prolyl-trna synthetase, putative [Theileria annulata]
          Length = 702

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 83/434 (19%), Positives = 158/434 (36%), Gaps = 55/434 (12%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV- 81
           ++++R+ MI  +   G Y +LP      +  N    ++  + G      P   + +    
Sbjct: 221 QVIIRSEMIEYYDISGCYIFLPSSYFIWETFNEWFNKQIKQRGVENCYFPMFVTKEKLEA 280

Query: 82  ESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +    D  +       PT E +M   F   I+S+R+LP    Q   
Sbjct: 281 EKTHLEGFSPEVAWVTRNGDVDLPDPIAIRPTSETIMYPEFARWIRSHRDLPLKLNQWNS 340

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +RSREFL ++ ++   T + +  +  +M   Y +    + +       
Sbjct: 341 VVRWEFKQPTPFIRSREFLWQEGHTAHTTEQEALDTVYEMLNLYSKYILVINVL------ 394

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I      E++                              I  + S  E++     
Sbjct: 395 ----IMSRFYEEYL--------------------------SVPVIKGVKSENEKFAG--- 421

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                   K+  SL      + RG++       GT +S      ++  +G    V   S+
Sbjct: 422 -------SKMTTSLESFIPANGRGVQAATSHLLGTTFSDMFDIRYEDEEGVKQKVHQTSW 474

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-CEKIYARLSKVG 376
           G    R +  +I    D KG++ P  VA  ++ ++ I +           +++  L++ G
Sbjct: 475 GF-TTRSIGIMIMVHGDDKGLVLPPRVAKVQVVIVPIMSKTAEQVMLRVNELFQLLTEAG 533

Query: 377 CDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V  DD  G   G +F   +L G PL++ VG+K V ++ V +  R    + D+ LE + 
Sbjct: 534 FRVKLDDRRGYTPGFKFNHWELRGVPLRLEVGAKDVENNTVRLVRRDNFAKSDVPLENLT 593

Query: 436 NYASHRFSNNRPVL 449
                     +  L
Sbjct: 594 ETIHQLLDEIQNSL 607


>gi|325103166|ref|YP_004272820.1| prolyl-tRNA synthetase [Pedobacter saltans DSM 12145]
 gi|324972014|gb|ADY50998.1| prolyl-tRNA synthetase [Pedobacter saltans DSM 12145]
          Length = 490

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/433 (18%), Positives = 159/433 (36%), Gaps = 86/433 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + + +++ ++   TG      P       +  E+   D +  E   +
Sbjct: 33  GCMVIKPYGYSIWEKMQSVLDQKFKETGHSNAYFPLFIPKSFFSKEASHVDGFATECAVV 92

Query: 97  AD-----------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                              + ++ +I  PT E ++ + ++  I+SYR+LP    Q     
Sbjct: 93  THYRLKNDGTGNIIVDEEAKLEEELIVRPTSETIIWNTYKGWIQSYRDLPILVNQWANVV 152

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E+R R  + R+ EFL ++ ++   T E +     KM   Y                  
Sbjct: 153 RWEMRTRLFL-RTAEFLWQEGHTAHATREEAVEETEKMLEVY------------------ 193

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                         AD  E  +                    +    +  E++       
Sbjct: 194 --------------ADFAENWLA----------------LPVVRGKKTANERFAG----- 218

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  L     E      + ++ G   + G  ++      F   +GK  +V   S+G+
Sbjct: 219 ------ALDTYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFTSKEGKQEFVWATSWGV 272

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSKVG 376
            + R++ A+I +  D  G++ P  +AP ++ ++ I   ++         + I A+L   G
Sbjct: 273 -STRLMGALIMAHSDDAGLVLPPKLAPIQVVIVPINKGEEELARITVVADDIIAQLKAKG 331

Query: 377 CDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS---LE 432
             V +DD   ++ G +FA  ++ G P+++ +G + + ++ +E+  R T  +E MS   + 
Sbjct: 332 ISVKYDDRDTQRPGFKFAEYEMKGVPVRLAIGGRDLDNNTIEVARRDTRTKETMSRDNIA 391

Query: 433 EVINYASHRFSNN 445
           +V+        NN
Sbjct: 392 DVVESLLEEIQNN 404


>gi|291557497|emb|CBL34614.1| prolyl-tRNA synthetase, family II [Eubacterium siraeum V10Sc8a]
          Length = 574

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 96/245 (39%), Positives = 139/245 (56%), Gaps = 4/245 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYS-WLPLGQKALDNVNAIIRE 59
           M+  K      +E P D +I SH +M+R G I   + GI+S + P  ++    +  IIRE
Sbjct: 1   MKLDKLVGDRFKERPSDCQIDSHAIMVRGGYIKYMANGIFSSYTPT-KRITKKIEQIIRE 59

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++    E+  P +  A LW ESGRYDS G E+LR  DRN   M+ G THEE    + R
Sbjct: 60  EMDKIDGQEVQFPVVMPASLWQESGRYDSIGSELLRFTDRNRMPMVLGMTHEEAAVHLVR 119

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + KSY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E  +  Y+K   
Sbjct: 120 EYGKSYTKYPFMIYQIQTKFRDEARPRGGLIRVREFTMKDAYSFHTSQEDLEQYYDKCHK 179

Query: 180 SYLRIFHRLGLKSIPM-RAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENT 237
           +Y  IF R G+  +   +++SG +GG +SHEF++L   GE  +  C +   +  + + ++
Sbjct: 180 AYENIFRRAGVPEVISVKSDSGMMGGSISHEFMLLTPVGEDTIASCHECGFNANMEAADS 239

Query: 238 DFDDI 242
             ++ 
Sbjct: 240 IIENT 244



 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 103/201 (51%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L+   +     Y   + + +  +  +  ++    +RGIEVG+IF  GTKY+  M+ T+ 
Sbjct: 367 GLDIDRDCANVEYHDFAKILDGGICPNCHKHSISISRGIEVGNIFQLGTKYTKTMNMTYL 426

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            ++G++    MG YGIG  R+ A+V E+ HD  G IWP  +AP+++ +  +++ D   + 
Sbjct: 427 DSNGEEKTPIMGCYGIGVGRLAASVCEAHHDDYGPIWPMPIAPWQVHICAVRSDDADVKA 486

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+Y  L   G +V +DD     G  F+ ADLLG PL+V+V  + + D+  EI  R  
Sbjct: 487 CADKLYNTLQNAGAEVIYDDRQVSAGVMFSDADLLGVPLRVVVSPRNLKDNCCEISARDK 546

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + +EE  +        
Sbjct: 547 SFSYKVPVEETADKVQELIKE 567


>gi|169335721|ref|ZP_02862914.1| hypothetical protein ANASTE_02141 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258459|gb|EDS72425.1| hypothetical protein ANASTE_02141 [Anaerofustis stercorihominis DSM
           17244]
          Length = 478

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 149/414 (35%), Gaps = 71/414 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +N+ A   +    TG   M  P L     L  E    + +  E+  +
Sbjct: 38  GFMVIRPYGYALWENIQAAFDKRFKETGHQNMYFPLLIPESFLNKEKEHVEGFAPEVAWV 97

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               +  +       PT E ++  ++   +KSYR LPF + Q     R E   R   +R+
Sbjct: 98  THGGENELAERLCIRPTSETIICSMYAKWLKSYRQLPFLYNQWANVVRWEKTTRP-FLRT 156

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M   Y                       ++  +++ 
Sbjct: 157 SEFLWQEGHTVHATFEEAQEETLQMIDIY----------------------REICEDYLA 194

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +                            ++   S  E++   +A  +            
Sbjct: 195 M--------------------------PVVVGQKSEKEKFAGAHATYT-----------I 217

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G        ++      F   + K+ Y    S+G+ + R++  +I   
Sbjct: 218 EALMHDGQALQSGTSHNLADHFAKAFGIKFLNKEEKEQYAYSTSWGV-STRLIGGIIMVH 276

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE--QIGS 390
            D  G+++P  +AP ++ +I I  H +   D   ++  +LS     V  DD  E    G 
Sbjct: 277 GDDYGLVFPPKIAPTQVVIIPIAQHKEGVLDKANELKNKLSD--LRVLLDD-NEAYSPGW 333

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +F   ++ G P+++ +G K + + +  I  R T  +  +SL+EV N        
Sbjct: 334 KFNQWEMKGVPVRIEIGPKDIENGQCVIARRDTSEKISVSLDEVENKVKELLDE 387


>gi|21226809|ref|NP_632731.1| prolyl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|74580278|sp|Q8PYZ1|SYP_METMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|20905107|gb|AAM30403.1| Prolyl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 480

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 167/427 (39%), Gaps = 71/427 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG+Y W P G     N  +IIRE  + +G  E   P L    +   E+     + 
Sbjct: 32  VRYPVKGLYVWYPFGFAIRRNTYSIIREILDNSGHQETLFPLLIPENEFMKEAEHIKGFE 91

Query: 91  KEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            E+  +     D  D  +   PT E  +  +++  ++S+ + P   YQI   FR E +  
Sbjct: 92  NEVYWVTHGGKDPLDIPLALRPTSETAIYPMYKKWVRSHADFPLKLYQIVNTFRYETKHT 151

Query: 147 FGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             ++R RE    K+A++   T E ++    +    Y  I+ R                  
Sbjct: 152 RPLIRLREITSFKEAHTVHATWEDAEAQVKEAIGLYTEIYRR------------------ 193

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                                     +P   +   D          W     A    + +
Sbjct: 194 ------------------------LAVPVLRSRRPD----------WDKFPGAD---YTD 216

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            L   +P+ K      +++G + + G  ++      ++  DG+  Y     YGI + R +
Sbjct: 217 ALDAVMPDGK-----TLQIGTVHHLGDNFAKTFDIKYEAPDGEQRYAHQTCYGI-SERSI 270

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           AA I    D KG++ P  +AP ++ +I I  K   +    AC+ +  RL K G  V  D 
Sbjct: 271 AATISIHGDDKGLVLPPEIAPVQVVIIPIIFKKGAEEVFAACKDVQERLKKAGIRVEVDA 330

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRF 442
              + G+++   ++ G PL++ +G + + ++  V ++ R TG ++ ++L E+      +F
Sbjct: 331 SDLRPGAKYYKWEMKGVPLRLEIGPRDLQNNVAVAVR-RDTGEKDQITLLEIEAGVRLKF 389

Query: 443 SNNRPVL 449
              +  L
Sbjct: 390 EAIQKSL 396


>gi|150400672|ref|YP_001324438.1| prolyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
 gi|171460849|sp|A6UTK4|SYP_META3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150013375|gb|ABR55826.1| prolyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
          Length = 456

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/415 (20%), Positives = 158/415 (38%), Gaps = 70/415 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   +LP G K        IR+  + +   E   P L   DL   E      + +E+  +
Sbjct: 26  GCGVYLPYGFKIRRYAFEAIRDMLDESNHDEALFPMLIPEDLLAKEGEHIKGFEEEVYWV 85

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                   D  +   PT E  +  + +  IK + +LP   YQI   FR E +    ++R 
Sbjct: 86  THGGTTPLDVKLALRPTSETPIYHMMKLWIKVHTDLPIKIYQIVNSFRYETKHTRPLIRL 145

Query: 153 RE-FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           RE    K+A++   T E ++         Y   F R+G                      
Sbjct: 146 REIMTFKEAHTAHSTSEEAEAQVQTALNIYKTFFDRMG---------------------- 183

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                         + ++ S   +W     A   +  + +F   
Sbjct: 184 ------------------------------VPTIVSQRPEWDKFPGADYTMAFDTIF--- 210

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P+ K      +++G +   G  ++      F+  +G   Y     YGI + R++A++I  
Sbjct: 211 PDGK-----TMQIGTVHNLGQHFAKTFELEFETPEGGKDYAYQTCYGI-SDRIIASIIAL 264

Query: 332 SHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
             D KG+I P  VAP +I +I +  K  +++  +  ++IY  L      V  DD   + G
Sbjct: 265 HGDEKGLILPPEVAPHQIIIIPLLFKGKEEIAMNKAKEIYKSLKNT-YRVKLDDRDIRPG 323

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +F   +L G P+++ +G + + ++K+ I  R TG +  +  + ++N  +    +
Sbjct: 324 KKFNDWELKGAPIRIELGPRDIENNKLTIYRRDTGEKFQIDEDNLLNELNTLIDS 378


>gi|294495462|ref|YP_003541955.1| prolyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
 gi|292666461|gb|ADE36310.1| prolyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
          Length = 478

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 80/424 (18%), Positives = 158/424 (37%), Gaps = 67/424 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG+Y W P G        +I+RE  +R    E   P L    +   E+     + 
Sbjct: 32  VRYPVKGLYVWHPFGFTIRKKTYSIMRELLDR-DHEETMFPLLIPEHEFMKEAQHIKGFE 90

Query: 91  KEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           +E+  +        +  +   PT E  +  +++  ++S+ +LP   YQI   FR E +  
Sbjct: 91  EEVYWVTHGGTSPLEVNLALRPTSETAIYPMYKLWVRSHADLPLRLYQIVNTFRYETKHT 150

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
             ++R RE     ++    T   +           +RI+     +       S       
Sbjct: 151 RPLIRLREIT---SFKEAHTVHATWEDAASQIDEAMRIYKEFYRRLAIPVLSSKR----- 202

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                                                       +W     A   +  + 
Sbjct: 203 -------------------------------------------PEWDKFPGADYTIAVDS 219

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           L    P+      R ++VG   + G  ++     T++ ++G+  Y     YG+ + R +A
Sbjct: 220 LM---PDG-----RTLQVGTAHHLGDNFAKTFEITYEDSEGEQVYAHQACYGV-SERCLA 270

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           A+I +  D KG++ P  VAP ++ +I I     +    ACE +   L   G  V  DD  
Sbjct: 271 ALISTHGDDKGLVLPPEVAPVQVVIIPIIFKKPEEVLSACEMVAEDLKDAGIKVKIDDSD 330

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ G+++   ++ G P+++ +G + + +    +  R TG +E + LE++ +     F++ 
Sbjct: 331 KRPGAKYYKWEMQGVPIRLEIGPRDLKNQAAMMARRDTGEKEQIPLEDISSTIKDTFADI 390

Query: 446 RPVL 449
              L
Sbjct: 391 HQNL 394


>gi|155061091|gb|ABS90481.1| threonyl-tRNA synthetase [Streptomyces albus]
          Length = 439

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/432 (16%), Positives = 128/432 (29%), Gaps = 39/432 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           D      +L L     +I     G+  WLP G      +   +R  + R G   +  P L
Sbjct: 37  DHRRLGRELELFDTDPLI---GAGLPYWLPDGAAVRHALEEYVRAAERRAGYRHVYSPVL 93

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
              +L+  SG +  Y ++M    +   + M+  P+       I+RS  +S+R LP    +
Sbjct: 94  GKRELYEISGHWSHYSEDMFPPMEVGGEQMLLRPSLCPHHALIYRSRPRSHRELPLRMAE 153

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +   +R EL    G +     +  +      T + +            R +  LG++   
Sbjct: 154 LGGMYRAELSGVLGGLSRVRSIHLNDAHVFCTLDQAAGEARAALEMIGRAYEALGIRPAR 213

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            R      GG                     +             D        VE   A
Sbjct: 214 FRLSLPGPGGK---------------YVADPEKWRRSTALLTEVLDASGVAYEAVEGEAA 258

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
            Y    DV   ++ D       +S   ++      FG +Y     A      G    +  
Sbjct: 259 FYGPKIDV---QIADGQGRESTLSTVQVDFHQPERFGLRYIGADGA------GHRPVMIH 309

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            S      R VA ++E                            +     C  +      
Sbjct: 310 RSVIGSVERAVAHLVEEHGGAFPAWLAPVQIAVLPVTGAQVPDGEAFLRRCAAL------ 363

Query: 375 VGCDVF-WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G      D     +G++   A L   P QV++G +  +D +V ++ R       +  +E
Sbjct: 364 -GLRAEQADPGRGSLGARIRAARL--VPYQVVIGEEEAADGRVALRLRDGRRVGPLPADE 420

Query: 434 VINYASHRFSNN 445
            +       S  
Sbjct: 421 ALARIDALVSAY 432


>gi|20092682|ref|NP_618757.1| prolyl-tRNA synthetase [Methanosarcina acetivorans C2A]
 gi|74580394|sp|Q8TJA2|SYP_METAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|19917968|gb|AAM07237.1| prolyl-tRNA synthetase [Methanosarcina acetivorans C2A]
          Length = 480

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 86/426 (20%), Positives = 156/426 (36%), Gaps = 69/426 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG+Y W P G     +   IIRE  + +G  E   P L    +   E+     + 
Sbjct: 32  VRYPVKGLYVWYPFGFAIRRSTYNIIREILDNSGHQETLFPLLIPENEFMKEAEHIKGFE 91

Query: 91  KEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            E+  +     D  D  +   PT E  +  +++  ++S+ + P   YQI   FR E +  
Sbjct: 92  NEVYWVTHGGKDSLDIPLALRPTSETAIYPMYKMWVRSHADFPIKLYQIVNTFRYETKHT 151

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
             ++R RE                                                    
Sbjct: 152 RPLIRLREITSF----------------------------------------------KE 165

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           +H      +  E QV          + +E      +  L S    W     A        
Sbjct: 166 AHTVHATWEDAEAQV-----KEAVELYTEIYRRLAVPVLRSRRPDWDKFPGAD------- 213

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
             D++ +      R +++G + + G  ++      ++  DG+  Y     YGI + R +A
Sbjct: 214 YTDAI-DAMMPDGRTLQIGTVHHLGDNFAKTFDIKYEAPDGEQRYAHQTCYGI-SERSIA 271

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           A I    D KG++ P  +AP ++ +I I  K   +    AC  +  RL K G  V  D  
Sbjct: 272 ATISIHGDDKGLVLPPEIAPVQVVIIPIIFKKGAEEVLAACRDVQERLKKTGVKVEIDAS 331

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRFS 443
             + G+++   ++ G PL++ +G + + ++  V ++ R TG +E + L E+      +F 
Sbjct: 332 DLRPGAKYYRWEMKGVPLRLEIGPRDLENNVAVSVR-RDTGEKEQIPLPEIETGVLQKFE 390

Query: 444 NNRPVL 449
             +  L
Sbjct: 391 AIQNSL 396


>gi|302924192|ref|XP_003053833.1| hypothetical protein NECHADRAFT_31483 [Nectria haematococca mpVI
           77-13-4]
 gi|256734774|gb|EEU48120.1| hypothetical protein NECHADRAFT_31483 [Nectria haematococca mpVI
           77-13-4]
          Length = 485

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/479 (16%), Positives = 149/479 (31%), Gaps = 86/479 (17%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +  P D      +  L    I  +S G   +LP G +  + +   +R++  R G  E+ 
Sbjct: 36  EKREPPDHRKLGLQQELFISSI--YSPGSPIFLPNGARIFNRLVDFLRKQYVRYGFEEVI 93

Query: 71  VPTLQSADLWVESGRYDSYGKEML------------------------RLADRNDKAMIY 106
            PT+    LW +SG  ++Y  +M                         +  D  +     
Sbjct: 94  TPTIYKKSLWAKSGHLENYADDMYAVRGNTEQPPAEHDGCCGSHPENLKPEDEEEGDYGL 153

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
            P +      IF S   SYR+LP  +       R+E+     G+ R R F   D + F  
Sbjct: 154 KPMNCPGHCLIFASKRHSYRDLPIRYADFSPLHRNEISGALSGLTRVRRFHQDDGHIFCR 213

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
            P   +    K       ++  L   +    A S                        ++
Sbjct: 214 -PCQVEEEIKKTLDFVKVVYTVLRFGASYRLALSTRPKDH---------------YIGTE 257

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           +       +     D       + E   A Y    D+    L DS  +  + +   ++  
Sbjct: 258 EEWAQAENALKRALDASGMEWGVKEGDGAFYGPKIDI---VLTDSDGKEHQTATIQLD-- 312

Query: 286 HIFYFGTKYSLPMSA---------------TFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             F    ++ L   A                     G    V +    +G++  + A++ 
Sbjct: 313 --FQLPKRFELEYQAPAPEYEARGETTEDPALLAEYGPVRPVMIHRAVLGSVERLMALLI 370

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV---------GCDVFW 381
             +D     WP  + P +  ++ +        D  E +   L            G  V  
Sbjct: 371 EKYD---GKWPFWLNPRQAIILTVNTSTP-VLDWAEHVRDVLVGHNKQNVFRPTGLAVDV 426

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI-KHRLTGIREDMSLEEVINYAS 439
           D     +G++   A   G+   ++VG + V + +V + + R       +S E++     
Sbjct: 427 DTTARPLGAKIKEARTNGYGQILVVGDEDVKNKQVALGRER-------ISPEDLRERLK 478


>gi|300790769|ref|YP_003771060.1| threonyl-tRNA synthetase [Amycolatopsis mediterranei U32]
 gi|299800283|gb|ADJ50658.1| threonyl-tRNA synthetase [Amycolatopsis mediterranei U32]
          Length = 390

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/433 (17%), Positives = 133/433 (30%), Gaps = 47/433 (10%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      +L L  G       G+  WLP G     ++   +R  + R G   +  P L  
Sbjct: 3   DHRKLGRELGLF-GTDPLIGAGLPYWLPDGAIVRHSLEEYVRNLERRAGYQHVHSPVLGK 61

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            +L+  SG +  Y  EM    D   + ++  P+       I+RS  +SYR LP    +I 
Sbjct: 62  RELYEISGHWSHYRDEMYPPMDVGGEQLVLRPSLCPHHALIYRSRGRSYRELPLRMAEIG 121

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             +R EL    G +     +  +      T +  +           R +  LG+     R
Sbjct: 122 GMYRSELSGVLGGLSRVRAIQLNDAHVFCTLDQVEAEAAAALALIRRAYDALGISPARYR 181

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                 GG                           +    +  DD+       E   A Y
Sbjct: 182 LSLPGPGGK-----------------YVPGNWAGAVEILRSVLDDL--PYDAAEGEAAFY 222

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMG 315
               DV   ++ D       +S   ++      FG          + GADG  H    + 
Sbjct: 223 GPKIDV---QIADGAGRESTLSTVQVDFHQPARFG--------LEYVGADGAKHRPVMVH 271

Query: 316 SYGIGAMRVVAAV-IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
              IG++    A  IE                          + +   + C  + A ++ 
Sbjct: 272 RSIIGSVERAVAQLIEVHGGAFPAWLAPVQLRLLPVSAVEVPYAREVLERCGDVRAEIAS 331

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G           +G++     L   P Q ++G   V+  ++ ++ R     +    EE+
Sbjct: 332 EG----------SLGARIRDGRL--VPYQAVIGPAEVAAGQLSVRLRDGRRLDAAGAEEM 379

Query: 435 INYASHRFSNNRP 447
           +          RP
Sbjct: 380 LARIGAEV--RRP 390


>gi|213416593|ref|ZP_03349737.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 223

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 3/189 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 34  VVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 93

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK+Y+ L  
Sbjct: 94  CYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRA 153

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +   ++
Sbjct: 154 QGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDI 213

Query: 435 INYASHRFS 443
           ++Y      
Sbjct: 214 VDYLVKAIK 222


>gi|225175968|ref|ZP_03729960.1| prolyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225168556|gb|EEG77358.1| prolyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 483

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 145/409 (35%), Gaps = 69/409 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+ A + E    TG      P      L   E+   + +  E+  +
Sbjct: 40  GCMVIRPYGFTLWENMQAGLDERIKATGHRNAYFPLFIPESLLQKEADHVEGFAPEVAWV 99

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               ++ +       PT E ++ ++F   I+SYR+LP    Q     R E   R   +R+
Sbjct: 100 THGGNEKLSERLLVRPTSETIICEMFSRWIQSYRDLPVLMNQWCNVVRWEKVTRP-FLRT 158

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   + E ++    +M   Y                               
Sbjct: 159 SEFLWQEGHTAHRSEEEAEEHTLRMLEVYRDFVE-------------------------- 192

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                           D  +P        +    +  E++                    
Sbjct: 193 ---------------NDLAVPV-------VKGQKTENEKFAG-----------ARETYSI 219

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G     GT ++     T+  +DG+  +V   S+G+ + R+V A+I   
Sbjct: 220 EALMSDGKALQAGTSHNLGTHFAKVFDITYLDSDGELKHVWQTSWGV-STRLVGAIIMVH 278

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGE-QIG 389
            D +G++ P  VAP ++ L+ I      +        IY  + + G  +  DD  E   G
Sbjct: 279 GDDRGLVLPPKVAPTQVILVPIAPKKVREEVLPKAAAIYEEIKEAGIRIEMDDREEYSPG 338

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +F   ++ G PL++ VG + +   +  +  R  G +E +++ ++    
Sbjct: 339 WKFNEWEMKGVPLRIEVGPRDLEAGQAVLARRDNGEKETVAIGDLKARV 387


>gi|291538408|emb|CBL11519.1| prolyl-tRNA synthetase, family II [Roseburia intestinalis XB6B4]
          Length = 567

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 107/285 (37%), Positives = 147/285 (51%), Gaps = 7/285 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYS-WLPLGQKALDNVNAIIRE 59
           M+  K      +E P D  I SH LM++ G +   + GIYS +LPL ++    +  I+RE
Sbjct: 1   MKLEKLIGERFRERPADCVIDSHALMVKGGYMKYMANGIYSSYLPL-KRITHKIEQILRE 59

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++    E+S P +  A LW ESGRY+S G+E+LR  DRN+  M+ G THEE    + R
Sbjct: 60  EMDKLDGQEVSFPVVMPASLWEESGRYESVGEELLRFTDRNNAKMVLGMTHEEAAVHLVR 119

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + KSY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E     Y K   
Sbjct: 120 EYAKSYNKYPFMIYQIQTKFRDEARPRAGLIRVREFTMKDAYSFHTSQEDLNQYYEKCHK 179

Query: 180 SYLRIFHRLGLKSIPMRA-ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +Y RIF R G+  +   A +SG +GG LSHEF++L   GE  +    +           +
Sbjct: 180 AYERIFERAGIPEVVSVASDSGMMGGSLSHEFMLLTPVGEDSIVLCNECDFRANMEAAEN 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHN-EKLFDSLPENKRVSARGI 282
             DI       E        T D+H  E +     +    S + +
Sbjct: 240 ISDIARDAVSAELEKVH---TPDIHTIEDICKFFGDETCNSCKAV 281



 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/210 (30%), Positives = 103/210 (49%)

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
              N D      L+   +   A Y   +  +   +     +     +RGIEVG+IF  G 
Sbjct: 358 CGANEDEYHYKGLDMQRDVPDAEYHDFAKAYEGGICPKCGKKTIRISRGIEVGNIFQLGD 417

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KY+  M  T+   +G+     MG YGIG  R+ AAV E+ HD  G IWP S+AP+++ L 
Sbjct: 418 KYTKAMKMTYVDQNGESKTPIMGCYGIGVGRLAAAVCEAHHDEYGPIWPKSIAPWQVHLC 477

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            ++A ++  R   + +Y +L ++G +V +DD     G  F+ ADLLG PL+VIV  + + 
Sbjct: 478 AVRADNEEVRKFADDLYEKLQEMGIEVIYDDRTVSAGVMFSDADLLGIPLRVIVSPRNMK 537

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              VE+  R   ++  + +EE         
Sbjct: 538 QGVVEVASRDKTLQTQVKMEEAAEQVKKYL 567


>gi|32477337|ref|NP_870331.1| threonyl-tRNA synthetase [Rhodopirellula baltica SH 1]
 gi|32447888|emb|CAD77406.1| threonyl-tRNA synthetase [Rhodopirellula baltica SH 1]
          Length = 830

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 73/506 (14%), Positives = 158/506 (31%), Gaps = 96/506 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAII-REE 60
            + Y   I +   RD  +   +  L    I+ +  +G+  WLP G +    +   + RE 
Sbjct: 337 LASYLEQIEEAKRRDHRVLGKQHGLFA--INPEVGQGLCLWLPKGARVRVTLEDFLRREL 394

Query: 61  QNR---------TGAIEMS-----VP---------------------------------- 72
            +R          G +EM       P                                  
Sbjct: 395 LSRGYDPVYSPHIGRVEMYETSGHFPYYRDSQFAPLFGSEVGGLLDAWSTRLDKDDLSKD 454

Query: 73  ----TLQSADLW-------VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                + +A+++         S   D+    + R    +++  +  P +      IF + 
Sbjct: 455 DEDKLIAAAEVFGVKLPDYKPSASNDAKKDVLHRWQLNHER-YLLKPMNCPHHCQIFGAQ 513

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR LP   ++    +R E      G+MR R     DA+ F  T +  +  +      
Sbjct: 514 PRSYRQLPLRLFEFGTVYRHEQTGELNGMMRVRGLTQDDAHIFC-TADQVEEEFRATIEL 572

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +   +GL    ++                  D   ++   S++  D    +     +
Sbjct: 573 TKFVLESVGLDDYRVQLSLR--------------DPDSSKYVGSEENWDHAEGALRGVLE 618

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +      A Y   +D     + D +  + ++    ++      F  +Y    +A
Sbjct: 619 QSGLSFNEEPGEAAFYGPKADFM---VRDCIGRSWQLGTVQLDYNLPERFKLEYKGNDNA 675

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T          V +     G++     ++     G   +W   ++P +I ++ +      
Sbjct: 676 T-------HRPVMIHRAPFGSLERFTGMLIEHFAGAFPMW---LSPEQIRVLPLSDKS-- 723

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +    +  +L + G  V  D    ++ ++   A +       +VG K     +V ++ 
Sbjct: 724 -VEYATAVAKQLDEAGFKVTVDASDGKVQAKIRNAQIDLVNYMAVVGPKEAESGQVALRD 782

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R+ G    M ++E I          +
Sbjct: 783 RIEGDLGSMPIKEAIARLQKEVETRQ 808


>gi|296449824|ref|ZP_06891591.1| proline--tRNA ligase [Clostridium difficile NAP08]
 gi|296877888|ref|ZP_06901908.1| proline--tRNA ligase [Clostridium difficile NAP07]
 gi|296261311|gb|EFH08139.1| proline--tRNA ligase [Clostridium difficile NAP08]
 gi|296431085|gb|EFH16912.1| proline--tRNA ligase [Clostridium difficile NAP07]
          Length = 510

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 71/406 (17%), Positives = 144/406 (35%), Gaps = 67/406 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD---- 98
           P G    + +   + ++   TG      P L    L   E+   + +  E+  +      
Sbjct: 75  PYGYALWEKMQEFMDKKFKETGHKNCYFPLLIPESLLNKEAEHVEGFAPEVAWVTHGGNK 134

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           + ++ +   PT E ++  ++   +KSYR LP+ + Q     R E   R  + R+ EFL +
Sbjct: 135 KLEERLCVRPTSETIICTMYAKWLKSYRELPYLYNQWCSVVRWEKSTRPFL-RTSEFLWQ 193

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T E ++    +    Y                                     
Sbjct: 194 EGHTLHETAEEAQEETIQQLEVYK------------------------------------ 217

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                        +  E      +    S  E++       +            E     
Sbjct: 218 ------------ALCEELLAMPVVAGQKSESEKFAGGERTYT-----------IEAMMHD 254

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   +G        S+G  + R++  +I +  D +G+
Sbjct: 255 GKALQSGTSHFLGQHFTKAFDITFADREGNLANPYHTSWGA-STRLIGGLIMTHSDNRGL 313

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           + P  VAP ++ ++ I A      +  +KIYA L   G  V  DD      G +F   ++
Sbjct: 314 VLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLKAKGVAVEVDDRDNYTTGWKFNEWEM 373

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G P+++ +G K + +++  +  R T  ++ M LE + +     F 
Sbjct: 374 KGVPVRIEIGPKDIENNQAMVFRRDTLEKDSMPLEGLADAVCDLFD 419


>gi|145640807|ref|ZP_01796389.1| prolyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|145274321|gb|EDK14185.1| prolyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
          Length = 125

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/121 (49%), Positives = 83/121 (68%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+Y    L+E P DA++ SH+LMLR GMI   + G+Y+WLP G + L  V  ++REE
Sbjct: 1   MRTSQYLFSTLKETPNDAQVVSHQLMLRAGMIRPMASGLYNWLPTGIRVLKKVEKVVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N+ GAIE+ +P +Q A+LW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD   S
Sbjct: 61  MNKGGAIEVLMPVVQPAELWEESGRWEQYGPELLRFEDRGNRNFVLGPTHEEVITDFSSS 120

Query: 121 H 121
            
Sbjct: 121 R 121


>gi|328951623|ref|YP_004368958.1| Prolyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
 gi|328451947|gb|AEB12848.1| Prolyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
          Length = 477

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 149/414 (35%), Gaps = 70/414 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    +N+   + E    TG   +  P       +  E+   + +  E+  +
Sbjct: 35  GTTVLRPYGYALWENIQRTLDEMFKATGHQNVYFPLFIPMSFFEREAEHVEGFSPELAVV 94

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D  ++ +   PT E ++  ++   I+SYR+LP    Q     R E+R R  + R+
Sbjct: 95  THAGGDALEEPLAVRPTSETIIGHMWAKWIRSYRDLPQLLNQWGNVVRWEMRTRPFL-RT 153

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++                                         
Sbjct: 154 SEFLWQEGHTAHATQEEAE----------------------------------------- 172

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+T       +    ++              + +  E++      T+            
Sbjct: 173 -AETRRMLGVYATLAREYAA------IPVWEGMKTESEKFAGAVYTTT-----------I 214

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   Y GT ++      F+  D +  YV   S+G+ + R + A+I + 
Sbjct: 215 EAMMRDGKALQAGTSHYLGTNFAKAFDIKFQDRDLETKYVHTTSWGL-SWRFIGAIIMTH 273

Query: 333 HDGKGIIWPDSVAPFKISLINIKAH--DQVCRDACEKIYARLSKVGCDVFWDDMGE-QIG 389
            D KG+I P  +AP ++ ++ I          +A + +  RL   G  V  DD  +   G
Sbjct: 274 GDDKGLILPPKLAPIQVVIVPIYKEATRARVLEAAQALEQRLKAQGVRVHLDDRDQYTPG 333

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +F   +L G P +V +G + V      +  RL G +E + LE +      R +
Sbjct: 334 YKFNDWELRGVPYRVELGPRDVESGTAVLASRLGG-KETLPLEGLAEAVPQRLA 386


>gi|14970558|emb|CAC44360.1| ProS protein [Erwinia chrysanthemi]
          Length = 224

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 70/186 (37%), Positives = 111/186 (59%), Gaps = 3/186 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+ N    D  P+ K   +  RGIEVGHIF  G KYS  + AT +G DG++  + MG 
Sbjct: 36  VADIRNVVEGDRSPDGKGTLLIKRGIEVGHIFQLGKKYSEALKATVQGEDGRNQTLTMGC 95

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKV 375
           YGIG  RV+AA IE +HD +GIIWPD++APF+++++ +  H     ++  E IY +L   
Sbjct: 96  YGIGVTRVIAAAIEQNHDDRGIIWPDAIAPFQVAILPMNMHKSFRVQEVAEGIYQQLRAN 155

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G DV  DD  E+ G  FA  +L+G P  +++G + + + ++E KHR  G +E +   +++
Sbjct: 156 GVDVLLDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDEIEYKHRRKGEKEMIKAGDIV 215

Query: 436 NYASHR 441
            +   +
Sbjct: 216 EFLLSQ 221


>gi|229015779|ref|ZP_04172758.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH1273]
 gi|229021987|ref|ZP_04178545.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH1272]
 gi|228739314|gb|EEL89752.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH1272]
 gi|228745536|gb|EEL95559.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH1273]
          Length = 476

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 150/412 (36%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   +G   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKESGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLEKATELQGRIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIRSLLEE 386


>gi|226295138|gb|EEH50558.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 559

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 75/453 (16%), Positives = 140/453 (30%), Gaps = 72/453 (15%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           P L   P D  +      L T  +  +S G   +LP G   L+ + + +R +  + G  E
Sbjct: 68  PTL--PPADHRVVGTAQDLFTTSV--YSPGSPLFLPNGTHILNKLTSFLRAQYAQYGFRE 123

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTD 116
           +  P++    LW  SG + +Y  +M  +  R             D++    P +      
Sbjct: 124 VLTPSIYKKSLWEVSGHWQNYKDDMYEVRGRGASGETAKGEIGEDESYGLKPMNCPGHCL 183

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F+S   SYR LP  +       R+E+     G+ R R F   D + F    +       
Sbjct: 184 LFKSQNHSYRELPLRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIFCRPQQIGSE-IE 242

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                   + +  G     +   + P                E     S +  D      
Sbjct: 243 SALRFTDTVMNTFGFNKYRLVLSTRP----------------ERDFIGSIELWDSAERQL 286

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTK 293
               +       + E   A Y    D+   ++ DS  +  ++S   +++     F  G  
Sbjct: 287 RDALEKNGRSWELNEGDGAFYGPKIDM---QVQDSDGKFHQLSTIQLDMNLPQRFELGYA 343

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            +           GK   V +     G+  R  A +IE+ +                   
Sbjct: 344 VAEGEEDYNPATPGKAMPVLIHRAIFGSLERFFALLIENYNGRWPFWLSPRQGIILTV-- 401

Query: 353 NIKAHDQVCRDACEKIYARLS-----KVG----------------------CDVFWDDMG 385
              + D+    A E    ++S     + G                        +  D   
Sbjct: 402 ---SQDEKLLQAAEDAATKMSGYPVHRNGELNSNSNSTAQPLKPISPAQTTFRIDVDTSA 458

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             +G +   A  + + L  ++G K + D  ++I
Sbjct: 459 RSLGKKIREAKKMKYNLIFVLGEKNLGDGSIDI 491


>gi|225677700|gb|EEH15984.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 559

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 75/453 (16%), Positives = 140/453 (30%), Gaps = 72/453 (15%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           P L   P D  +      L T  +  +S G   +LP G   L+ + + +R +  + G  E
Sbjct: 68  PTL--PPADHRVVGTAQDLFTTSV--YSPGSPLFLPNGTHILNKLTSFLRAQYAQYGFRE 123

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTD 116
           +  P++    LW  SG + +Y  +M  +  R             D++    P +      
Sbjct: 124 VLTPSIYKKSLWEVSGHWQNYKDDMYEVRGRGASGETAKGEIGEDESYGLKPMNCPGHCL 183

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F+S   SYR LP  +       R+E+     G+ R R F   D + F    +       
Sbjct: 184 LFKSQNHSYRELPLRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIFCRPQQIGSE-IE 242

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                   + +  G     +   + P                E     S +  D      
Sbjct: 243 SALRFTDTVMNTFGFNKYRLVLSTRP----------------ERDFIGSIELWDSAERQL 286

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTK 293
               +       + E   A Y    D+   ++ DS  +  ++S   +++     F  G  
Sbjct: 287 RDALEKNGRSWELNEGDGAFYGPKIDM---QVQDSDGKFHQLSTIQLDMNLPQRFELGYA 343

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            +           GK   V +     G+  R  A +IE+ +                   
Sbjct: 344 VAEGEEDYNPATPGKAMPVLIHRAIFGSLERFFALLIENYNGRWPFWLSPRQGIILTV-- 401

Query: 353 NIKAHDQVCRDACEKIYARLS-----KVG----------------------CDVFWDDMG 385
              + D+    A E    ++S     + G                        +  D   
Sbjct: 402 ---SQDEKLLQAAEDAATKMSGYPVHRNGELNSNSNSTAQPLKPISPAQTTFRIDVDTSA 458

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
             +G +   A  + + L  ++G K + D  ++I
Sbjct: 459 RSLGKKIREAKKMKYNLIFVLGEKNLGDGSIDI 491


>gi|313113439|ref|ZP_07799028.1| prolyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624166|gb|EFQ07532.1| prolyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 479

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 87/417 (20%), Positives = 158/417 (37%), Gaps = 67/417 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLRL 96
           G     P GQ   + +   +      TG   +++P L    L  + G   + +  E+  +
Sbjct: 40  GFIILRPYGQAIWELIQKDMDARFKATGHENVAMPVLIPESLLQKEGELVNGFAPEVAWV 99

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D+ ++ +   PT E +  D +   + SYR LP  + Q     R E   R  + RS
Sbjct: 100 TMGGSDKLEERLAVRPTSETMFCDHWSRVLHSYRELPMKYNQWCSVVRWEKTTRPFL-RS 158

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REF  ++ ++   T   ++    +    Y                               
Sbjct: 159 REFWWQEGHTIHETAAEAEAETQQQLNCY------------------------------- 187

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E          D  IP        +    +  E++    A  +            
Sbjct: 188 -ADVCEQ---------DLAIPV-------VKGRKTDKEKFAGAEATYT-----------I 219

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   YFG K+S     TF G D + H+    S+G+ + R+V A+I + 
Sbjct: 220 EAMMKDGKALQSGTSHYFGDKFSKAYDVTFTGRDNQLHHPFQTSWGV-STRLVGAIIMTH 278

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+I P +VAP ++ ++ I AH     +   ++  ++SK    V  DD     G +F
Sbjct: 279 GDDDGLILPPAVAPIQVVVVPIAAHKPGVSEKAAELAEKISKY-ARVKLDDSDNAPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  ++ G PL++ +G K +  ++  +  R T  +  +SL+E+      +    R  L
Sbjct: 338 SQWEMKGVPLRLEIGPKDLEKNQCVLVRRDTREKVFVSLDELETAIPAQLEALRKDL 394


>gi|160934880|ref|ZP_02082266.1| hypothetical protein CLOLEP_03755 [Clostridium leptum DSM 753]
 gi|156866333|gb|EDO59705.1| hypothetical protein CLOLEP_03755 [Clostridium leptum DSM 753]
          Length = 478

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 84/433 (19%), Positives = 160/433 (36%), Gaps = 80/433 (18%)

Query: 24  KLM----LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           +LM    +R  MI +         P G    +N+  I+  E    G   +++P      L
Sbjct: 30  ELMDYSSVRGCMIIE---------PYGWAIWENIRDILDHEFKELGHENVAMPLFIPESL 80

Query: 80  W-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
              E    + +  E+  +    ++ +       PT E +  D +++ I S+R+LP  + Q
Sbjct: 81  LQKEKDHVEGFAPEVAWVTHGGEEELPERLCVRPTSETLFCDHYKNIIHSWRDLPKLYNQ 140

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
                R E   R  + RS EF  ++ ++   T + +     +M   Y             
Sbjct: 141 WCSVVRWEKTTRPFL-RSVEFYWQEGHTMHATAQEAMEETERMLNVY------------- 186

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                              AD  E Q+                    +    +  EQ+  
Sbjct: 187 -------------------ADFCEKQLAI----------------PVVKGRKTKKEQFAG 211

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             A  +            E      + ++ G   YFG  ++     T+   + K  Y   
Sbjct: 212 AEATYT-----------IEALMHDGKALQSGTSHYFGDGFARAFEITYTDKENKPQYPHQ 260

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            S+G+ + R++  +I +  D  G++ P +VAP ++ +I I  H     +  E++ ARL K
Sbjct: 261 TSWGM-STRIIGGIIMTHGDDNGLVLPPAVAPIQVMIIPIAQHKPGVLEKAEELRARLKK 319

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + C V  DD  +  G +F+  ++ G PL++ +G K +  ++  +  R    +  +SL+E+
Sbjct: 320 I-CRVRMDDSEQSPGWKFSQYEMKGVPLRLEIGPKDIEKNQCVLVRRDNREKTFVSLDEL 378

Query: 435 INYASHRFSNNRP 447
                      R 
Sbjct: 379 EAKIPELLEAVRQ 391


>gi|19114946|ref|NP_594034.1| mitochondrial threonine-tRNA ligase [Schizosaccharomyces pombe
           972h-]
 gi|3183172|sp|O13969|SYTM_SCHPO RecName: Full=Probable threonyl-tRNA synthetase, mitochondrial;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           Flags: Precursor
 gi|2330792|emb|CAB11266.1| mitochondrial threonine-tRNA ligase [Schizosaccharomyces pombe]
          Length = 473

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 70/454 (15%), Positives = 144/454 (31%), Gaps = 51/454 (11%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D    + +  L T  I   + G   +LP G +  + +   +R +    G  E+  P +  
Sbjct: 47  DHRTIAARQKLYTTSI--LTPGSIFFLPHGTRIYNRLVDFLRAQYQIHGFEEIITPLIFK 104

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKA-------MIYGPTHEEVMTDIFRSHIKSYRNLP 129
            DLW +SG + +Y KE+ R+ +  +             P +      ++ S  +SY+ LP
Sbjct: 105 KDLWEKSGHWQNYEKEIFRVEESRNVEDEHSNATYGLKPMNCPGHCIVYASTERSYKELP 164

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F       R+E      G+ R R F   D + F                   +++  L
Sbjct: 165 LRFADFSPLHRNEASGALSGLTRLRCFHQDDGHIFCSPESIKDE-IKNTLTFVKQVYSLL 223

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G+  + +   + P       E I   DT            +           +      I
Sbjct: 224 GMNKLKLYLSTRP------EEHIGSLDT-----------WNEAENGLREALQESGETWII 266

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   A Y    DV    + D+  +  + +   ++      F   Y              
Sbjct: 267 NEGDGAFYGPKIDVM---VADARGKWHQTATIQLDFNLPQRFKLYYRTDAGDNAGSEKLI 323

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              V +     G++     ++    +     WP  ++P    ++ +   D       +++
Sbjct: 324 KQPVMIHRAIFGSLERFMGILI---EHLNGHWPFWLSPRHAVILPVNQTD-RILTYAKQV 379

Query: 369 YARLSKVGCD-------------VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              LS    +             V  +   + IG +   + LL +  ++++G   V    
Sbjct: 380 QKELSNQEVNESEFLPLNKNTYYVDINAEAQSIGKRLRESRLLNYNYEIVIGEDEVDKEI 439

Query: 416 VEIKHR---LTGIREDMSLEEVINYASHRFSNNR 446
           + +  R    +     M+++++           R
Sbjct: 440 LSVSSRHNHNSRDTRKMTIQQLKKEFIENVKAYR 473


>gi|295101509|emb|CBK99054.1| prolyl-tRNA synthetase [Faecalibacterium prausnitzii L2-6]
          Length = 479

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 87/417 (20%), Positives = 158/417 (37%), Gaps = 67/417 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLRL 96
           G     P GQ   + +   +      TG   +++P L    L  + G   + +  E+  +
Sbjct: 40  GFIILRPYGQAIWELIQKDMDARFKATGHENVAMPVLIPESLLQKEGELVNGFAPEVAWV 99

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D+ ++ +   PT E +  D +   + SYR LP  + Q     R E   R  + RS
Sbjct: 100 TMGGSDKLEERLAVRPTSETMFCDHWSRVLHSYRELPMKYNQWCSVVRWEKTTRPFL-RS 158

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REF  ++ ++   T   ++    +    Y                               
Sbjct: 159 REFWWQEGHTIHETAAEAEAETQQQLNCY------------------------------- 187

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E          D  IP        +    +  E++    A  +            
Sbjct: 188 -ADVCEQ---------DLAIPV-------VKGRKTDKEKFAGAEATYT-----------I 219

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   YFG K+S     TF G D + H+    S+G+ + R+V A+I + 
Sbjct: 220 EAMMKDGKALQSGTSHYFGDKFSKAYDVTFTGRDNQLHHPFQTSWGV-STRLVGAIIMTH 278

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+I P +VAP ++ ++ I AH     +   ++  ++SK    V  DD     G +F
Sbjct: 279 GDDDGLILPPAVAPIQVVVVPIAAHKPGVSEKAAELAEKISKY-ARVKLDDSDNAPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  ++ G PL++ +G K +  ++  +  R T  +  +SL+E+      +    R  L
Sbjct: 338 SQWEMKGVPLRLEIGPKDLEKNQCVLVRRDTREKVFVSLDELETAIPAQLEALRKDL 394


>gi|158314451|ref|YP_001506959.1| threonyl-tRNA synthetase [Frankia sp. EAN1pec]
 gi|158109856|gb|ABW12053.1| threonyl-tRNA synthetase [Frankia sp. EAN1pec]
          Length = 428

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 141/433 (32%), Gaps = 41/433 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           D      +L L     +I     G+  WLP G      +   IR  + R G   +  P L
Sbjct: 15  DHRKLGRELDLFDTDPLI---GAGLPYWLPDGAAVRHTLEEYIRTAERRAGYQHVYSPVL 71

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
              +L+  SG +  Y  +M    D   + ++  P+       I+RS   SYR+LP    +
Sbjct: 72  GKRELYEISGHWSHYSDDMFPPMDLGGEQIVLRPSLCPHHALIYRSRSHSYRDLPLRIAE 131

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +   +R EL    G +     +  +      T +                +  LG+    
Sbjct: 132 LGGMYRSELSGVLGGLTRVRAIHLNDAHIFCTLDQVADEARNALDMIRHAYEALGITPRR 191

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            R      GG                   + +             D         E   A
Sbjct: 192 YRLSLPGPGGK---------------YVAAPELWQRSTALLTDVLDQAGLPYEAAEGEAA 236

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
            Y    DV   ++ D       +S   ++      F   Y  P SA       +   V +
Sbjct: 237 FYGPKIDV---QIIDGAGRESTLSTIQVDFHQPEQFDLHYIGPDSA-------RHRPVMV 286

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               IG++    A      +  G  +P  +AP +I ++ I   D    +A   +  + + 
Sbjct: 287 HRSIIGSVERAVA---HLIEQHGGAFPAWLAPTQIVVLPIT--DSELPNAA-ALARQCTD 340

Query: 375 VGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +G        + G  +G++   + L   P Q ++G++  +D  + ++ R     +     
Sbjct: 341 LGLRAQIIGPERG-SLGARVRQSKL--VPYQAVIGAQESTDGHIALRLRDGHRLDPQPTG 397

Query: 433 EVINYASHRFSNN 445
           ++++  S     +
Sbjct: 398 DILSRISALIEAH 410


>gi|163840211|ref|YP_001624616.1| threonyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
 gi|162953687|gb|ABY23202.1| threonyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
          Length = 453

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 139/434 (32%), Gaps = 37/434 (8%)

Query: 16  RDAEIASHKLMLRTG--MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
            D      +L L     +I     G+  WLP G      +  +  EE  R+G   +  P 
Sbjct: 51  ADHRQLGRELDLFASNPLI---GPGLPLWLPDGAVIRTELEKLAVEESLRSGYQRVYSPV 107

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L   +L+  SGR+  + ++M       ++ ++  P +      +F +   S+R LP  + 
Sbjct: 108 LAKRELYERSGRWAKFSEDMFPPLRIGNEELVLRPANCPHHAMLFAARPHSWRELPIRYA 167

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           ++   FR EL      +     +  D      TPE ++    +   +    +  LGL+  
Sbjct: 168 ELGSMFRSELSGVLSGLSRVRQINLDDCHVFCTPEQAQSEVVRGIQAISAGYSILGLEPD 227

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
             R  +   G                    S               D++      V    
Sbjct: 228 YFRLSARDSGTSF---------------AGSASDWAAAESVLKAALDELGLPYRRVAGEA 272

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           A Y    DV   + FD+  + + +S   ++         +      A           + 
Sbjct: 273 AFYGPKIDV---QFFDAAGKEETLSTVQLDF-------VQPERFDLAYIGDDGAAHRPMM 322

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +     GAM    A++    +      P  +AP +++++ +          C +I A+  
Sbjct: 323 VHRGLFGAMERTVALLI---EKHQGKMPPWLAPVQLAVLPV---SDTQAARCAEISAQAL 376

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G  V  D     +GS+             +VGS+     K+ +        + + + E
Sbjct: 377 AAGIRVIVDH-DGSVGSRVRKTSQRRVSWLAVVGSQESESGKLSLSIPGARPAQLLPVTE 435

Query: 434 VINYASHRFSNNRP 447
            I     +     P
Sbjct: 436 AIELMRQKIQRREP 449


>gi|168182030|ref|ZP_02616694.1| proline--tRNA ligase [Clostridium botulinum Bf]
 gi|182674785|gb|EDT86746.1| proline--tRNA ligase [Clostridium botulinum Bf]
          Length = 478

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 148/411 (36%), Gaps = 67/411 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +  +    G   +S+P     +L   E    + +  E+  +
Sbjct: 39  GCMIIRPNGYAIWENIQKYVDTKLKEYGHENVSMPIFIPENLLQKEKDHVEGFAPEVAWV 98

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D  +       PT E +  + +   ++SY++LP  + Q     R E   R  + R+
Sbjct: 99  THGGDDELAERLCVRPTSETLFCEHYAKIVQSYKDLPKLYNQWCSVVRWEKTTRPFL-RT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    K+   Y R+   +        A    +G     E   
Sbjct: 158 TEFLWQEGHTIHETKEEAESHSLKILNMYSRLCEDM-------LAMPVVMGKKTDKEKFA 210

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD                                        Y   S +H+        
Sbjct: 211 GADDT--------------------------------------YTIESLMHD-------- 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G   Y G  +S   +  F   +GK  Y    ++ +   R++ A+I   
Sbjct: 225 ------GKALQAGTSHYLGQNFSKAFAIQFSDRNGKLDYPHYTTWAV-TTRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+  P  +AP +  +I +  H +   +  +++  +L+KV   V  DD  +  G ++
Sbjct: 278 GDNSGLKLPPRIAPTQAVIIPVAQHKEGVLEKAKELKEKLAKV-VRVKLDDSDKMPGWKY 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +  ++ G PL++ +G K +  ++  +  R    +  +SL+E+         
Sbjct: 337 SEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEIEIKVQEMLD 387


>gi|153938581|ref|YP_001392690.1| prolyl-tRNA synthetase [Clostridium botulinum F str. Langeland]
 gi|171769234|sp|A7GIT0|SYP_CLOBL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|152934477|gb|ABS39975.1| proline--tRNA ligase [Clostridium botulinum F str. Langeland]
 gi|295320672|gb|ADG01050.1| proline--tRNA ligase [Clostridium botulinum F str. 230613]
 gi|322807661|emb|CBZ05236.1| prolyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 478

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 148/411 (36%), Gaps = 67/411 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +  +    G   +S+P     +L   E    + +  E+  +
Sbjct: 39  GCMIIRPNGYAIWENIQKYVDTKLKEYGHENVSMPIFIPENLLQKEKDHVEGFAPEVAWV 98

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D  +       PT E +  + +   ++SY++LP  + Q     R E   R  + R+
Sbjct: 99  THGGDDELAERLCVRPTSETLFCEHYAKIVQSYKDLPKLYNQWCSVVRWEKTTRPFL-RT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    K+   Y R+   +        A    +G     E   
Sbjct: 158 TEFLWQEGHTIHETKEEAESHSLKILNMYSRLCEDM-------LAMPVVMGKKTDKEKFA 210

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD                                        Y   S +H+        
Sbjct: 211 GADDT--------------------------------------YTIESLMHD-------- 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G   Y G  +S   +  F   +GK  Y    ++ +   R++ A+I   
Sbjct: 225 ------GKALQAGTSHYLGQNFSKAFAIQFSDRNGKLDYPHYTTWAV-TTRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+  P  +AP +  +I +  H +   +  E++  RL+KV   V  DD  +  G ++
Sbjct: 278 GDNSGLKLPPRIAPTQAVIIPVAQHKEGVLEKAEELKERLAKV-VRVKLDDSDKMPGWKY 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +  ++ G PL++ +G K +  ++  +  R    +  +SL+E+         
Sbjct: 337 SEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEIEIKVQEMLD 387


>gi|170755400|ref|YP_001782969.1| prolyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
 gi|259511587|sp|B1IFI2|SYP_CLOBK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169120612|gb|ACA44448.1| prolyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
          Length = 478

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 148/411 (36%), Gaps = 67/411 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +  +    G   +S+P     +L   E    + +  E+  +
Sbjct: 39  GCMIIRPNGYAIWENIQKYVDTKLKEYGHENVSMPIFIPENLLQKEKDHVEGFAPEVAWV 98

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D  +       PT E +  + +   ++SY++LP  + Q     R E   R  + R+
Sbjct: 99  THGGDDELAERLCVRPTSETLFCEHYAKIVQSYKDLPKLYNQWCSVVRWEKTTRPFL-RT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    K+   Y R+   +        A    +G     E   
Sbjct: 158 TEFLWQEGHTIHETKEEAESHSLKILNMYSRLCEDM-------LAMPVVMGKKTDKEKFA 210

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD                                        Y   S +H+        
Sbjct: 211 GADDT--------------------------------------YTIESLMHD-------- 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G   Y G  +S   +  F   +GK  Y    ++ +   R++ A+I   
Sbjct: 225 ------GKALQAGTSHYLGQNFSKAFAIQFSDRNGKLDYPHYTTWAV-TTRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+  P  +AP +  +I +  H +   +  E++  RL+KV   V  DD  +  G ++
Sbjct: 278 GDNSGLKLPPRIAPTQAVIIPVAQHKEGVLEKAEELKERLAKV-VRVKLDDSDKMPGWKY 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +  ++ G PL++ +G K +  ++  +  R    +  +SL+E+         
Sbjct: 337 SEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEIEIKVQEMLD 387


>gi|196247599|ref|ZP_03146301.1| Anticodon-binding domain protein [Geobacillus sp. G11MC16]
 gi|196212383|gb|EDY07140.1| Anticodon-binding domain protein [Geobacillus sp. G11MC16]
          Length = 298

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 72/191 (37%), Positives = 104/191 (54%), Gaps = 3/191 (1%)

Query: 255 PYAATSDVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             +  +D+   +  D  P+        RGIEVGH+F  GTKYS  M+A +   +G+   +
Sbjct: 108 AVSQYADLRFVQEGDPSPDGNGTIRFARGIEVGHVFKLGTKYSEAMNAVYLDENGRTQTM 167

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            MG YGIG  R+VAA+ E   D  G++WP SVAPF + L+   A     R   E+ Y +L
Sbjct: 168 IMGCYGIGVSRLVAAIAEQFADENGLVWPVSVAPFHVHLLTANAKSDEQRMLAEEWYEKL 227

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            + G DV +DD  E+ G +FA +DL+G PL+V VG +  S+  VE+K R TG   D+ + 
Sbjct: 228 GQAGFDVLYDDRPERAGVKFADSDLIGIPLRVTVGKR-ASEGVVEVKVRKTGETFDVPVG 286

Query: 433 EVINYASHRFS 443
           E+I        
Sbjct: 287 ELIETVRRLLQ 297


>gi|228989573|ref|ZP_04149557.1| Prolyl-tRNA synthetase 2 [Bacillus pseudomycoides DSM 12442]
 gi|228770110|gb|EEM18690.1| Prolyl-tRNA synthetase 2 [Bacillus pseudomycoides DSM 12442]
          Length = 476

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 150/412 (36%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++  +   +G   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDGKLKESGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R   +R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP-FLRT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQEETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLEKATQLQGRIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++    +     
Sbjct: 335 NEYEMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKEFVSMDQLEERITSLLDE 386


>gi|168178993|ref|ZP_02613657.1| prolyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|226950778|ref|YP_002805869.1| prolyl-tRNA synthetase [Clostridium botulinum A2 str. Kyoto]
 gi|259511586|sp|C1FM10|SYP_CLOBJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|182670280|gb|EDT82256.1| prolyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|226841931|gb|ACO84597.1| proline--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
          Length = 478

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 148/411 (36%), Gaps = 67/411 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +  +    G   +S+P     +L   E    + +  E+  +
Sbjct: 39  GCMIIRPNGYAIWENIQKYVDTKLKEYGHENVSMPIFIPENLLQKEKDHVEGFAPEVAWV 98

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D  +       PT E +  + +   ++SY++LP  + Q     R E   R  + R+
Sbjct: 99  THGGDDELAERLCVRPTSETLFCEHYAKIVQSYKDLPKLYNQWCSVVRWEKTTRPFL-RT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    K+   Y R+   +        A    +G     E   
Sbjct: 158 TEFLWQEGHTIHETKEEAESHSLKILNMYSRLCEDM-------LAMPVVMGKKTDKEKFA 210

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD                                        Y   S +H+        
Sbjct: 211 GADDT--------------------------------------YTIESLMHD-------- 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G   Y G  +S   +  F   +GK  Y    ++ +   R++ A+I   
Sbjct: 225 ------GKALQAGTSHYLGQNFSKAFAIQFSDRNGKLDYPHYTTWAV-TTRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+  P  +AP +  +I +  H +   +  +++  +L+KV   V  DD  +  G ++
Sbjct: 278 GDNSGLKLPPRIAPTQAVIIPVAQHKEGVLEKAKELKEKLAKV-VRVKLDDSDKMPGWKY 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +  ++ G PL++ +G K +  ++  +  R    +  +SL+E+         
Sbjct: 337 SEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEIEIKVQEMLD 387


>gi|260587370|ref|ZP_05853283.1| proline--tRNA ligase [Blautia hansenii DSM 20583]
 gi|331083671|ref|ZP_08332782.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260542237|gb|EEX22806.1| proline--tRNA ligase [Blautia hansenii DSM 20583]
 gi|330403882|gb|EGG83434.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 479

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 149/423 (35%), Gaps = 67/423 (15%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGR 85
           +  +I   S KG     P G    +N+   +      TG   + +P      L   E   
Sbjct: 28  KADLIDYTSVKGCMVIKPAGYAIWENIQHELDRRFKETGVENVYLPMFIPESLLQKEKDH 87

Query: 86  YDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +     +   + +   PT E +  D +   I+S+R+LP  + Q     R 
Sbjct: 88  VEGFAPEVAWVTHGGLEPLQERLCVRPTSETLFCDFYAKEIQSHRDLPKVYNQWCSVVRW 147

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E   R   +RSREFL ++ ++   T E ++    +M   Y                    
Sbjct: 148 EKTTRP-FLRSREFLWQEGHTAHATAEEAEERTIQMLNIY-------------------- 186

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                       AD  E  +                    +    +  E++    +  + 
Sbjct: 187 ------------ADFCEQVLA----------------MPVVKGKKTDKEKFAGAESTYT- 217

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                      E      + ++ G    FG  ++      +   + K  YV   S+G+  
Sbjct: 218 ----------IEALMHDGKALQSGTSHNFGDGFAKAFGIQYTDKENKLQYVHQTSWGM-T 266

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++ A+I    D  G++ P  +AP +  +I I+   +   D   K+ A+L   G  V  
Sbjct: 267 TRLIGAIIMVHGDNSGLVLPPRIAPVQAVVIPIQQKKEGVLDNAYKLQAQLKAAGIRVKT 326

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  +  G +FA  ++ G P+++  G K +  ++  +  R T  +  +SL+ +       
Sbjct: 327 DDTDKSPGFKFAEQEMRGIPVRIECGPKDMEANQAVVVRRDTREKITVSLDNLAEEVQKI 386

Query: 442 FSN 444
              
Sbjct: 387 LDT 389


>gi|297201097|ref|ZP_06918494.1| threonyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197712117|gb|EDY56151.1| threonyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 413

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 73/432 (16%), Positives = 132/432 (30%), Gaps = 49/432 (11%)

Query: 17  DAEIASHKLMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           D      +L L           G+  WLP G      +   +RE +   G   +  P L 
Sbjct: 6   DHRRLGRELDLFDT--DPLMGAGLPYWLPDGAVVRHVLEEYVRETERAAGYRHVYSPVLG 63

Query: 76  SADLWVESGRYDSYGKEMLRLA-----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
             +L+  SG +D Y  +M         +   + ++  P+       I+RS   SYR LP 
Sbjct: 64  KRELYEISGHWDHYSDDMFPPMRLGGGEGEGEEVVLRPSLCPHHALIYRSRSHSYRELPL 123

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
            F ++   +R EL    G +     +  +      TPE +            R +  LG+
Sbjct: 124 RFAELGGMYRSELSGVLGGLTRVRSIQLNDAHIFCTPEQAVAEARAALALIRRAYDDLGI 183

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           ++   R                    G+ +     +             D        VE
Sbjct: 184 RAARYRLSLPG--------------DGDGKFVPDPELWRRATALLEEVLD--GIEYESVE 227

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    DV   ++ D       +S   I+                  + G DG+ H
Sbjct: 228 GEAAFYGPKIDV---QISDPAGRESTLSTVQIDFHQP--------ERFDLHYIGRDGRKH 276

Query: 311 YV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +    IG++    A +  +H G   +W           + I    +   +    + 
Sbjct: 277 RPVMVHRSIIGSVERAVAHLIEAHGGAFPVW------LAPVQLVILPVAEEQEERAHDLV 330

Query: 370 ARLSKVGCDVFWDDMG---EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            R    G        G     +G++   A L   P Q ++G +        ++ R     
Sbjct: 331 RRAEARGIRAEL--SGPGHGTLGARVRAARL--VPYQAVIGQREADAGCAAVRLRDGRRP 386

Query: 427 EDMSLEEVINYA 438
             + ++E++   
Sbjct: 387 GAVPVDELLERI 398


>gi|154278048|ref|XP_001539849.1| threonyl-tRNA synthetase [Ajellomyces capsulatus NAm1]
 gi|150413434|gb|EDN08817.1| threonyl-tRNA synthetase [Ajellomyces capsulatus NAm1]
          Length = 733

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 69/486 (14%), Positives = 129/486 (26%), Gaps = 89/486 (18%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ +  L  L+E   R+         L      + S G    LP G K  + + A++R E
Sbjct: 291 KQMQEHLKFLEEAEKRNHLRIGKDQDLF--FFDEVSPGCPFLLPNGTKIFNALQALLRSE 348

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F  
Sbjct: 349 YRKRGYQEVQSPNMYDVGIWRQSGHWQHYKDDMFKL-DIEKRTWALKPMNCPGHAIMFGH 407

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SYR LP       +  R+E       +                        + +F  
Sbjct: 408 RERSYRELPLRIADFGVLHRNEASGALHGL-----------------TRIMQEIDGLFDF 450

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G     ++  + P       E                   ++          
Sbjct: 451 LRAIYGLFGFSFK-LKLSTRPEKYMGKLE-----------------TWNYAEDQLRAAMT 492

Query: 241 DIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYF------- 290
                +  V E   A Y    DV    + D+L    + +   ++      F         
Sbjct: 493 KFKGNDWEVDEGDGAFYGPKIDV---TIQDALKREFQCATIQLDYQMPVNFKLEYMTGET 549

Query: 291 -----------------------GTKYSLPMSATFKGADGKDHYVQMGSYGI---GAMRV 324
                                  G      +  T     G      +  +        R 
Sbjct: 550 GAKAKPEEKSAGAPAAKTADRPAGDAAKPDVPPTNSDEPGPGRARPVVIHRAIIGSFERF 609

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +IE                    +  +        D  E++   L     +V  D  
Sbjct: 610 FGIIIEHFGGKWPFWLSPRQILIVPVMPAVN-------DYVEELQRILKGDKLNVDIDIS 662

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASH 440
           G  +  +     +  +    +VG++  S   V I++R     +     + LEE       
Sbjct: 663 GNTMQKKIRTGQIAQYNFIFVVGAQEKSTRTVNIRNRDDPSSQAKGSLVPLEEARAKLRA 722

Query: 441 RFSNNR 446
                R
Sbjct: 723 LRKERR 728


>gi|228913143|ref|ZP_04076782.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228846548|gb|EEM91561.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 502

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 63  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 122

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R   +R+
Sbjct: 123 THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP-FLRT 181

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 182 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 210

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 211 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 248

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 249 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 301

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 302 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 360

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 361 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 412


>gi|88942337|sp|Q7UJ52|SYT_RHOBA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|327537946|gb|EGF24643.1| threonyl-tRNA synthetase [Rhodopirellula baltica WH47]
          Length = 743

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 73/506 (14%), Positives = 158/506 (31%), Gaps = 96/506 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAII-REE 60
            + Y   I +   RD  +   +  L    I+ +  +G+  WLP G +    +   + RE 
Sbjct: 250 LASYLEQIEEAKRRDHRVLGKQHGLFA--INPEVGQGLCLWLPKGARVRVTLEDFLRREL 307

Query: 61  QNR---------TGAIEMS-----VP---------------------------------- 72
            +R          G +EM       P                                  
Sbjct: 308 LSRGYDPVYSPHIGRVEMYETSGHFPYYRDSQFAPLFGSEVGGLLDAWSTRLDKDDLSKD 367

Query: 73  ----TLQSADLW-------VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                + +A+++         S   D+    + R    +++  +  P +      IF + 
Sbjct: 368 DEDKLIAAAEVFGVKLPDYKPSASNDAKKDVLHRWQLNHER-YLLKPMNCPHHCQIFGAQ 426

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            +SYR LP   ++    +R E      G+MR R     DA+ F  T +  +  +      
Sbjct: 427 PRSYRQLPLRLFEFGTVYRHEQTGELNGMMRVRGLTQDDAHIFC-TADQVEEEFRATIEL 485

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +   +GL    ++                  D   ++   S++  D    +     +
Sbjct: 486 TKFVLESVGLDDYRVQLSLR--------------DPDSSKYVGSEENWDHAEGALRGVLE 531

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 +      A Y   +D     + D +  + ++    ++      F  +Y    +A
Sbjct: 532 QSGLSFNEEPGEAAFYGPKADFM---VRDCIGRSWQLGTVQLDYNLPERFKLEYKGNDNA 588

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           T          V +     G++     ++     G   +W   ++P +I ++ +      
Sbjct: 589 T-------HRPVMIHRAPFGSLERFTGMLIEHFAGAFPMW---LSPEQIRVLPLSDKS-- 636

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +    +  +L + G  V  D    ++ ++   A +       +VG K     +V ++ 
Sbjct: 637 -VEYATAVAKQLDEAGFKVTVDASDGKVQAKIRNAQIDLVNYMAVVGPKEAESGQVALRD 695

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
           R+ G    M ++E I          +
Sbjct: 696 RIEGDLGSMPIKEAIARLQKEVETRQ 721


>gi|303238788|ref|ZP_07325320.1| prolyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302593667|gb|EFL63383.1| prolyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 481

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 150/417 (35%), Gaps = 66/417 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 41  GCMIIRPYGYAIWENIQKTLDARFKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 100

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E +  D + + I+SYR+LP  + Q     R E   R   +R+
Sbjct: 101 THGGQEELAEKLCVRPTSETLFCDHYSNIIQSYRDLPKLYNQWCSVVRWEKTTRP-FLRT 159

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    KM   Y                               
Sbjct: 160 VEFLWQEGHTAHATAEDAQEETIKMLNVY------------------------------- 188

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E  +                    I    +  E++    A  +            
Sbjct: 189 -ADFCEKVLAI----------------PVIKGQKTDKEKFAGAKATFT-----------I 220

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FG  ++      +   + +  YV   S+G+ + R++  +I   
Sbjct: 221 ESLMHDGKALQSGTSHNFGDGFAQAFGIQYTDQNNQLQYVHQTSWGV-STRLIGGIIMVH 279

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ +I +  H +   +    I  RL+  G  V  DD  +  G ++
Sbjct: 280 GDDNGLVLPPKIAPIQVVVIPVSQHKEGVLEKAYAIRDRLAAKGIRVKIDDSDKMPGWKY 339

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  ++ G P+++ +G K +  ++  +  R++  +  +SL+E+    S      +  L
Sbjct: 340 SEYEMKGVPIRLEIGPKDIEKNQAVLVTRVSREKLFISLDELEGKVSETLDKVQDEL 396


>gi|240280652|gb|EER44156.1| threonyl-tRNA synthetase [Ajellomyces capsulatus H143]
 gi|325089093|gb|EGC42403.1| threonyl-tRNA synthetase [Ajellomyces capsulatus H88]
          Length = 733

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 72/486 (14%), Positives = 134/486 (27%), Gaps = 89/486 (18%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ +  L  L+E   R+         L      + S G    LP G K  + + A++R E
Sbjct: 291 KQMQEHLKFLEEAEKRNHLRIGKDQDLF--FFDEVSPGCPFLLPNGTKIFNALQALLRSE 348

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P +    +W +SG +  Y  +M +L D   +     P +      +F  
Sbjct: 349 YRKRGYQEVQSPNMYDVGIWRQSGHWQHYKDDMFKL-DIEKRTWALKPMNCPGHAIMFGH 407

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +SYR LP       +  R+E       +                        + +F  
Sbjct: 408 RERSYRELPLRIADFGVLHRNEASGALHGL-----------------TRIMQEIDGLFDF 450

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              I+   G     ++  + P       E                   ++          
Sbjct: 451 LRAIYGLFGFSFK-LKLSTRPEKYMGKLE-----------------TWNYAEDQLRAAMT 492

Query: 241 DIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFG------ 291
                +  V E   A Y    DV    + D+L    + +   ++      F         
Sbjct: 493 KFKGNDWEVDEGDGAFYGPKIDV---TIQDALKREFQCATIQLDYQMPVNFKLEYMTGET 549

Query: 292 -------TKYSLPMSATFKGAD-------------------GKDHYVQMGSYGIGAM-RV 324
                   K +   +A                         G+   V +    IG+  R 
Sbjct: 550 GAKAKPEEKSAGAPAAKTADKPAGDAAKPDVPPTNSDEPGPGRARPVVIHRAIIGSFERF 609

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +IE                    +  +        D  E++   L     +V  D  
Sbjct: 610 FGIIIEHFGGKWPFWLSPRQILIVPVMPAVN-------DYVEELQRILKGDKLNVDIDIS 662

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED----MSLEEVINYASH 440
           G  +  +     +  +    +VG++  S   V I++R     +     + LEE       
Sbjct: 663 GNTMQKKIRTGQIAQYNFIFVVGAQEKSTRTVNIRNRDDPSSQAKGSLVPLEEARAKLRA 722

Query: 441 RFSNNR 446
                R
Sbjct: 723 LRKERR 728


>gi|71655606|ref|XP_816364.1| threonyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70881486|gb|EAN94513.1| threonyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 817

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 82/524 (15%), Positives = 145/524 (27%), Gaps = 99/524 (18%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +  L     H+ S G   WLP G +  + +    R++  R G  E+  
Sbjct: 299 EAARRDHRNIGRQQQLFG--FHEVSPGSAFWLPHGARIYNALVEFQRKQYRRRGFEEVVS 356

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + S+ LW+ SG +D Y   M R+    +      P +      ++     SY+ LP  
Sbjct: 357 PNMFSSKLWMVSGHWDKYADNMFRIVVEKE-DHGMKPMNCPGHCIMYAMQQHSYKELPIR 415

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           +    +  R+EL     G+ R R F   DA+ F    +  +       V    ++  LG 
Sbjct: 416 YADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRMDQVQEE-IQGALVFLDDVYRTLGF 474

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP----------------- 233
           K     A + P     + E    A+        S   +   +P                 
Sbjct: 475 KFFLKHA-TRPENKLGTEEMWDQAEAYLRAALNSFCGIPEHLPDPFKEGATFTFDGRRDS 533

Query: 234 -----------SENTDFDDIISLNSIVEQW---------------TAPYAATSDVHNEKL 267
                      + N +  D        ++W                A Y    D+    +
Sbjct: 534 VKKLRALLKKQAANRENKDTEKKEEKDDEWKGPTHADAWEENTGDGAFYGPKIDI---VV 590

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG------------ 315
            D+L    + +   ++      FG KY+LP S T +G  G +                  
Sbjct: 591 EDALRRRHQCATVQLDFNLPQRFGLKYTLPTS-TVEGGAGAEAKEHHADPNAPKVGTDAT 649

Query: 316 ---------------------------------SYGIGAMRVVAAVIESSHDGKGIIWPD 342
                                            +  +   R +   +E         +  
Sbjct: 650 TAEGKPEAEDEFLSSYEKAAKELCIDRRLDANQARPVMIHRAIFGSLERCIAILCEHYGG 709

Query: 343 SVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
               +      I             K+       G     D     +  +   A++  + 
Sbjct: 710 EWPLWLSPRQVIVIPVSAENTAYATKVRDAFYADGFHADVDSGNATLDKKIRNAEVARYN 769

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              +VG        V ++ R        SL EV  +        
Sbjct: 770 FIFVVGQVEEETQTVNVRTRDNRRHGTKSLAEVQRWLRELVDTY 813


>gi|257438845|ref|ZP_05614600.1| proline--tRNA ligase [Faecalibacterium prausnitzii A2-165]
 gi|257198660|gb|EEU96944.1| proline--tRNA ligase [Faecalibacterium prausnitzii A2-165]
          Length = 479

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 87/417 (20%), Positives = 158/417 (37%), Gaps = 67/417 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLRL 96
           G     P GQ   + +   +      TG   +++P L    L  + G   + +  E+  +
Sbjct: 40  GFIILRPYGQAIWELIQKDMDARFKATGHENVAMPVLIPESLLQKEGELVNGFAPEVAWV 99

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D+ ++ +   PT E +  D +   + SYR LP  + Q     R E   R  + RS
Sbjct: 100 TMGGSDKLEERLAVRPTSETMFCDHWSRVLHSYRELPMKYNQWCSVVRWEKTTRPFL-RS 158

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REF  ++ ++   T   ++    +    Y                               
Sbjct: 159 REFWWQEGHTIHETAAEAEAETQQQLNCY------------------------------- 187

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E          D  IP        +    +  E++    A  +            
Sbjct: 188 -ADVCEQ---------DLAIPV-------VKGRKTDKEKFAGAEATYT-----------I 219

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   YFG K+S     TF G D + H+    S+G+ + R+V A+I + 
Sbjct: 220 EAMMKDGKALQSGTSHYFGDKFSKAYDVTFTGRDNQLHHPFQTSWGV-STRLVGAIIMTH 278

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+I P +VAP ++ ++ I AH     +   ++  ++SK    V  DD     G +F
Sbjct: 279 GDDDGLILPPAVAPIQVVVVPIAAHKPGVSEKAAELAEKISKY-ARVKLDDSDNAPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  ++ G PL++ +G K +  ++  +  R T  +  +SL+E+      +    R  L
Sbjct: 338 SQWEMKGVPLRLEIGPKDLEKNQCVLVRRDTREKIFVSLDELETAIPAQLEALRKDL 394


>gi|218235284|ref|YP_002365239.1| prolyl-tRNA synthetase [Bacillus cereus B4264]
 gi|229148794|ref|ZP_04277043.1| Prolyl-tRNA synthetase 2 [Bacillus cereus m1550]
 gi|218163241|gb|ACK63233.1| proline--tRNA ligase [Bacillus cereus B4264]
 gi|228634682|gb|EEK91262.1| Prolyl-tRNA synthetase 2 [Bacillus cereus m1550]
          Length = 476

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSKAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++ A + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQAHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E + ++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQLEERIPALLEE 386


>gi|256786722|ref|ZP_05525153.1| threonyl tRNA synthetase [Streptomyces lividans TK24]
 gi|289770616|ref|ZP_06529994.1| threonyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|289700815|gb|EFD68244.1| threonyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 421

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 77/418 (18%), Positives = 143/418 (34%), Gaps = 41/418 (9%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G+  WLP G      +   +RE + R G   +  P L   +L+  SG ++ Y  +M  
Sbjct: 37  GAGLPYWLPDGAVVRHTLEEYVREAERRAGYRHVYSPVLGKRELYEISGHWEHYRDDMFP 96

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             +   + ++  P+       ++RS  +SYR LP    ++   +R E     G +     
Sbjct: 97  PMELGAEEVVLRPSLCPHHALVYRSRARSYRELPLRIAELGAMYRSEPSGVLGGLSRVRA 156

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           +  +      TP+ +            R    LG+++   R      GG           
Sbjct: 157 IHLNDAHIFCTPDQAAAEARAALGLIRRAHADLGIRAARHRLSLPGPGGK---------- 206

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                     +             D        VE   A Y    DV  E   D+     
Sbjct: 207 -----YVADPELWRRATALLEEALD--GLPYEAVEGEAAFYGPKIDVQIE---DAAGRES 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHD 334
            +S   I+      FG +        + G DG  H    +    IG++    A      +
Sbjct: 257 TLSTVQIDFHQPERFGLR--------YLGPDGARHRPVMVHRSVIGSVERAVA---HLIE 305

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD--MGEQIGSQF 392
             G  +P  +AP ++ ++ +       R+A   +  + + +G      D   G  +G++ 
Sbjct: 306 AHGGAFPAWLAPVQLVVLPVAG---AQREAAYALVRQATDLGLRAEVADPERG-SLGARV 361

Query: 393 AVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             A     P Q ++G++   D   V+++ R       +S  E+++  + R     P L
Sbjct: 362 RAA--RKVPYQAVIGAREAQDGDLVDVRLRDGRRPGQLSGTELLHRITDRVEARGPEL 417


>gi|51978320|gb|AAU19870.1| proline--tRNA ligase (prolyl-tRNA synthetase) [Bacillus cereus
           E33L]
          Length = 502

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 63  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 122

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R   +R+
Sbjct: 123 THGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP-FLRT 181

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 182 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 210

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 211 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 248

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F    GK  YV   S+G+ + R++  +I   
Sbjct: 249 ------GKALQTGTSHNFGTNFSEAFDIKFLDRTGKWQYVHQTSWGV-STRMIGGLIMVH 301

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 302 GDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQGHIQKV-ARVKIDASNKTPGWKF 360

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 361 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 412


>gi|228995766|ref|ZP_04155427.1| Prolyl-tRNA synthetase 2 [Bacillus mycoides Rock3-17]
 gi|228764010|gb|EEM12896.1| Prolyl-tRNA synthetase 2 [Bacillus mycoides Rock3-17]
          Length = 476

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 150/412 (36%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++  +   +G   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDGKLKESGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQEETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLEKATQLQGRIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++    +     
Sbjct: 335 NEYEMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKEFVSMDQLEERITSLLDE 386


>gi|15618411|ref|NP_224696.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae CWL029]
 gi|16752543|ref|NP_444805.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|33241851|ref|NP_876792.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
 gi|13633970|sp|Q9Z851|SYP_CHLPN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|4376787|gb|AAD18640.1| Prolyl tRNA Synthetase [Chlamydophila pneumoniae CWL029]
 gi|7189180|gb|AAF38117.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|33236360|gb|AAP98449.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
          Length = 568

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 87/223 (39%), Positives = 131/223 (58%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F    +   + A + S++L+ + G + + SKG+Y++ PL  + +  +  IIREE
Sbjct: 1   MKTSQLFYKTSKNANKSAAVLSNELLEKAGYLFKVSKGVYTYTPLLWRVVSKMMNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L +A+LW  +GR++++  E  +  L DR  K+    PTHEEV+    
Sbjct: 61  LNAIGGQELLLPLLHNAELWQHTGRWEAFTSEGLLYTLKDREGKSHCLAPTHEEVICSFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              + S R LP   YQI  KFRDE+RPRFG++RSRE LM+D+Y+F  +PE     Y K+ 
Sbjct: 121 AQWLSSKRQLPLHLYQIATKFRDEIRPRFGLIRSRELLMEDSYTFSDSPEQMNEQYEKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            +Y +IF RLGL  + + A+ G IG   S EF VL   GE  +
Sbjct: 181 SAYSKIFDRLGLAYVIVTADGGKIGKGKSEEFQVLCSLGEDTI 223



 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 5/186 (2%)

Query: 261 DVHNEKLFDSLPENKRVSAR---GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D    +  D+ PEN     R   GIEV HIF  GT+Y+      F+   G+     MG+Y
Sbjct: 385 DFLLAEEGDTCPENPGHPYRIYQGIEVAHIFNLGTRYTDSFEVNFQDEHGQTQQCWMGTY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R +AA +E   D +GI+WP ++APF I++      D V ++  E IY  L   G 
Sbjct: 445 GIGVGRTLAACVEQLADDRGIVWPKALAPFSITIAF-NGGDTVSQELAETIYHELQSQGY 503

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +   DD  E++G +   +DL+G P ++I+G  + S    EI+ R +G +  +S E    +
Sbjct: 504 EPLLDDRDERLGFKLKDSDLIGIPYKLILGKSYQSSGIFEIESR-SGEKYTVSPEAFPTW 562

Query: 438 ASHRFS 443
             +  +
Sbjct: 563 CQNHLA 568


>gi|15836031|ref|NP_300555.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|8978870|dbj|BAA98706.1| prolyl tRNA synthetase [Chlamydophila pneumoniae J138]
          Length = 568

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 87/223 (39%), Positives = 131/223 (58%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F    +   + A + S++L+ + G + + SKG+Y++ PL  + +  +  IIREE
Sbjct: 1   MKTSQLFYKTSKNANKSAAVLSNELLEKAGYLFKVSKGVYTYTPLLWRVVSKMMNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L +A+LW  +GR++++  E  +  L DR  K+    PTHEEV+    
Sbjct: 61  LNAIGGQELLLPLLHNAELWQHTGRWEAFTSEGLLYTLKDREGKSHCLAPTHEEVICSFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              + S R LP   YQI  KFRDE+RPRFG++RSRE LM+D+Y+F  +PE     Y K+ 
Sbjct: 121 AQWLSSKRQLPLHLYQIATKFRDEIRPRFGLIRSRELLMEDSYTFSDSPEQMNEQYEKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            +Y +IF RLGL  + + A+ G IG   S EF VL   GE  +
Sbjct: 181 SAYSKIFDRLGLAYVIVTADGGKIGKGKSEEFQVLCSLGEDTI 223



 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 5/186 (2%)

Query: 261 DVHNEKLFDSLPENKRVSAR---GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D    +  D+ PEN     R   GIEV HIF  GT+Y+      F    G+     MG+Y
Sbjct: 385 DFLLAEEGDTCPENPGHPYRIYQGIEVAHIFNLGTRYTDSFEVNFLDEHGQTQQCWMGTY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R +AA +E   D +GI+WP ++APF I++      D V ++  E IY  L   G 
Sbjct: 445 GIGVGRTLAACVEQLPDDRGIVWPKALAPFSITIAF-NGGDTVSQELAETIYHELQSQGY 503

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +   DD  E++G +   +DL+G P ++I+G  + S    EI+ R +G +  +S E    +
Sbjct: 504 EPLLDDRDERLGFKLKDSDLIGIPYKLILGKSYQSSGIFEIESR-SGEKYTVSPEAFPTW 562

Query: 438 ASHRFS 443
             +  +
Sbjct: 563 CQNHLA 568


>gi|269303377|gb|ACZ33477.1| prolyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN]
          Length = 568

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 87/223 (39%), Positives = 129/223 (57%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+ F    +   + A + S++L+ + G + + SKG+Y++ PL  + +  +  IIREE
Sbjct: 1   MKTSQLFYKTSKNANKSAAVLSNELLEKAGYLFKVSKGVYTYTPLLWRVVSKMMNIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L +A+LW  +GR++++  E  +  L DR  K+    PTHEEV+    
Sbjct: 61  LNAIGGQELLLPLLHNAELWQHTGRWEAFTSEGLLYTLKDREGKSHCLAPTHEEVICSFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              + S R LP   YQI  KFRDE+RPRFG++RSRE LM+D+Y+F  +PE     Y K+ 
Sbjct: 121 AQWLSSKRQLPLHLYQIATKFRDEIRPRFGLIRSRELLMEDSYTFSDSPEQMNEQYEKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
             Y +IF RLGL    + A+ G IG   S EF VL   GE  +
Sbjct: 181 SGYSKIFDRLGLAYAIVTADGGKIGKGKSEEFQVLCSLGEDTI 223



 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 95/186 (51%), Gaps = 5/186 (2%)

Query: 261 DVHNEKLFDSLPENKRVSAR---GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           D    +  D+ PEN     R   GIEV HIF  GT+Y+      F+   G+     MG+Y
Sbjct: 385 DFLLAEEGDTCPENPGHPYRIYQGIEVAHIFNLGTRYTDSFEVNFQDEHGQTQQCWMGTY 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R +AA +E   D +GI+WP ++APF I++      D V ++  E +Y  L   G 
Sbjct: 445 GIGVGRTLAACVEQLADDRGIVWPKALAPFSITIAF-NGGDTVSQELAETLYHELQSQGY 503

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +   DD  E++G +   +DL+G P ++I+G  + S    EI+ R +G +  +S E    +
Sbjct: 504 EPLLDDRDERLGFKLKDSDLIGIPYKLILGKSYQSSGIFEIESR-SGEKYTVSPEAFPTW 562

Query: 438 ASHRFS 443
             +  +
Sbjct: 563 CQNHLA 568


>gi|320583690|gb|EFW97903.1| proline--trna ligase, putative [Pichia angusta DL-1]
          Length = 666

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 81/471 (17%), Positives = 155/471 (32%), Gaps = 92/471 (19%)

Query: 13  ENPRDAEIASHKLML--------RTGMIHQH-----------SKGIYSWLPLGQKALDNV 53
           E   +A+I   KL+          +G   Q              G Y   P      + +
Sbjct: 150 ETKTEAKIDDAKLIGVTVDKERDFSGWYQQILTKGEMLDYYDVSGCYILRPASYAIWEKI 209

Query: 54  NAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGP 108
                +     G      P   S+  L  E    + +  E+  +        ++ +   P
Sbjct: 210 QRWFDDRIKADGVSNAYFPMFVSSRVLEKEKDHVEGFAPEVAWVTRAGSSDLEEPIAIRP 269

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T E VM   +   I+S+R+LP    Q     R E +     +R+REFL ++ ++  LT E
Sbjct: 270 TSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAHLTKE 329

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
            +    +K+   Y  ++                                           
Sbjct: 330 EASEQVSKILDLYAGVYE------------------------------------------ 347

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                 E      I  + +  E++      T+                 + RGI+     
Sbjct: 348 ------ELLAVPVIKGVKTENEKFAGGLYTTT----------CEGYIPTTGRGIQGATSH 391

Query: 289 YFGTKYSLPMSATFKGADGKDHY-VQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAP 346
           + G  +S   + + +   G +H  +       G + RV+  ++    D KG++ P  VA 
Sbjct: 392 HLGQNFSKMFNISVENPLGPEHPKIYAHQTSWGLSTRVIGVMVMIHSDNKGLVIPPRVAQ 451

Query: 347 FKISLINIKAHDQVCRDACEKIYA-------RLSKVGCDVFWDDMGE-QIGSQFAVADLL 398
            ++ +I +   ++  ++   K+Y        RL K       D       G +F+  +L 
Sbjct: 452 NQVVIIPVGITNKTTKEIENKLYETCSELNSRLKKADVRTITDFRDNYSPGWKFSDWELK 511

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           G P+++ VG K ++++ V    R  G +  +SL+ V           +  L
Sbjct: 512 GVPVRLEVGPKDIANNSVMAVRRDNGEKTALSLDTVETELPKLLEAIQKSL 562


>gi|75761526|ref|ZP_00741486.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490981|gb|EAO54237.1| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 503

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 64  GCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 123

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R   +R+
Sbjct: 124 THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP-FLRT 182

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 183 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 211

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 212 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 249

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 250 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 302

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 303 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 361

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 362 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 413


>gi|229051703|ref|ZP_04195164.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH676]
 gi|228721660|gb|EEL73143.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH676]
          Length = 476

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++ A + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQAHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E + ++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQLEERIPALLEE 386


>gi|226498392|ref|NP_001147898.1| bifunctional aminoacyl-tRNA synthetase [Zea mays]
 gi|195614460|gb|ACG29060.1| bifunctional aminoacyl-tRNA synthetase [Zea mays]
          Length = 693

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 137/417 (32%), Gaps = 70/417 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
            G Y   P      +++ +    E  + G      P   S   L  E    + +  E+  
Sbjct: 229 SGCYILRPWAYGIWESIQSFFDAEIKKLGVENAYFPIFVSQKALNKEKAHVEGFSAEVAW 288

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +   +D  +       PT E +M + +   I S+R+LP    Q     R E       +R
Sbjct: 289 VTKYSDTDLAEPVAIRPTSETIMYNAYSKWISSHRDLPLKLNQWTNVVRWEFSSPTPFIR 348

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++   T + +      +   Y R++                          
Sbjct: 349 TREFLWQEGHTAHATEKEADEQTYAILELYRRVYE------------------------- 383

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      I  + +  E++    Y  T + +       
Sbjct: 384 -----------------------EVLAVPVIKGVKTESEKFAGGHYTTTVEAYI------ 414

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                + + R ++       G  ++   +  +     +  +V   S+G+   R +  +I 
Sbjct: 415 -----QENGRAVQSATSHNLGENFAKMFNIQYLDEKNEKKWVWQTSWGL-TTRSIGIMIM 468

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDM-GE 386
              D +G++ P  +A  +  +I +   D          +++   L+K G  V  DD    
Sbjct: 469 VHGDDQGLVLPPRIAKVQAVIIPVIFKDSEKGKLDAKAKELEEELAKAGVRVKIDDRTNY 528

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             G ++   +L G PL++ +G K +   +V +  R  G +  +  E +    +    
Sbjct: 529 SPGWKYNHWELKGVPLRIELGPKDLEKGEVRLVKRFDGSKSQLKQENLGKQVAEILE 585


>gi|229194773|ref|ZP_04321562.1| Prolyl-tRNA synthetase 2 [Bacillus cereus m1293]
 gi|228588716|gb|EEK46745.1| Prolyl-tRNA synthetase 2 [Bacillus cereus m1293]
          Length = 502

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 63  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 122

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               ++ +       PT E +  + F   ++SY +LP  + Q     R E   R   +R+
Sbjct: 123 THGGNEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP-FLRT 181

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 182 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 210

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 211 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 248

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F    GK  YV   S+G+ + R++  +I   
Sbjct: 249 ------GKALQTGTSHNFGTNFSEAFDIKFLDRTGKWQYVHQTSWGV-STRMIGGLIMVH 301

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 302 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKALELQGHIQKV-ARVKIDASNKTPGWKF 360

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 361 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 412


>gi|229171240|ref|ZP_04298831.1| Prolyl-tRNA synthetase 2 [Bacillus cereus MM3]
 gi|228612233|gb|EEK69464.1| Prolyl-tRNA synthetase 2 [Bacillus cereus MM3]
          Length = 476

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLHILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQEHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEKRIPALLEE 386


>gi|322819645|gb|EFZ26679.1| threonyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 816

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 82/524 (15%), Positives = 145/524 (27%), Gaps = 99/524 (18%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +  L     H+ S G   WLP G +  + +    R++  R G  E+  
Sbjct: 298 EAARRDHRNIGRQQQLFG--FHEVSPGSAFWLPHGARIYNALVEFQRKQYRRRGFEEVVS 355

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + S+ LW+ SG +D Y   M R+    +      P +      ++     SY+ LP  
Sbjct: 356 PNMFSSKLWMVSGHWDKYADNMFRIVVEKE-DHGMKPMNCPGHCIMYAMQQHSYKELPIR 414

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           +    +  R+EL     G+ R R F   DA+ F    +  +       V    ++  LG 
Sbjct: 415 YADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRMDQVQEE-IRGALVFLDDVYRTLGF 473

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP----------------- 233
           K     A + P     + E    A+        S   +   +P                 
Sbjct: 474 KFFLKHA-TRPENKLGTEEMWDQAEAYLRAALNSFCGIPEHLPDPFKEGTTFTFDGRRDS 532

Query: 234 --------------------SENTDFDDIISLNSIVEQW------TAPYAATSDVHNEKL 267
                                +  + DD     +  E W       A Y    D+    +
Sbjct: 533 VKKLRALLKKQAANRENKDTDKKEEKDDEWKGPTHAEAWEENTGDGAFYGPKIDI---VV 589

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG------------ 315
            D+L    + +   ++      FG KY+LP S T +G  G +                  
Sbjct: 590 EDALRRRHQCATVQLDFNLPQRFGLKYTLPTS-TVEGGAGAEAREHHTDPNAPNVGTDAT 648

Query: 316 ---------------------------------SYGIGAMRVVAAVIESSHDGKGIIWPD 342
                                            +  +   R +   +E         +  
Sbjct: 649 TTEGKPEAEDECLSSYEKAARELCIDRRLDANQARPVMIHRAIFGSLERCIAILCEHYGG 708

Query: 343 SVAPFKISLINIK-AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
               +      I             K+       G     D     +  +   A++  + 
Sbjct: 709 EWPLWLSPRQVIVIPVSAENTTYATKVRDAFYADGFHADVDSGNATLDKKIRNAEVARYN 768

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              +VG        V ++ R        SL +V  +        
Sbjct: 769 FIFVVGQVEEETQTVNVRTRDNRRHGTKSLADVQRWLRELVDTY 812


>gi|229108063|ref|ZP_04237688.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock1-15]
 gi|229143182|ref|ZP_04271614.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST24]
 gi|296501219|ref|YP_003662919.1| prolyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|228640263|gb|EEK96661.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST24]
 gi|228675338|gb|EEL30557.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock1-15]
 gi|296322271|gb|ADH05199.1| prolyl-tRNA synthetase [Bacillus thuringiensis BMB171]
          Length = 476

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++ A + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQAHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E + ++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQLEERIPALLEE 386


>gi|160895412|ref|ZP_02076181.1| hypothetical protein CLOL250_02969 [Clostridium sp. L2-50]
 gi|156862914|gb|EDO56345.1| hypothetical protein CLOL250_02969 [Clostridium sp. L2-50]
          Length = 478

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 145/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +       G   + +P      L   E    + +  E+  +
Sbjct: 39  GCMILRPAGYAIWENIQKELDRRFKEIGVENVYMPLFIPESLLQKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D   + +   PT E +  D++ + I SYR+LP  + Q     R E   R   +RS
Sbjct: 99  TQGGLDPLPERLCVRPTSETLFCDLYSNIIHSYRDLPKVYNQWCSVVRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M   Y                               
Sbjct: 158 MEFLWQEGHTAHATAEEAEERTIQMLNVY------------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E  +                    I    +  E++    A  +            
Sbjct: 187 -ADFCEQVLAIPM----------------IKGRKTDKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG  ++      +  A+ K  YV   S+G+ + R++ A+I   
Sbjct: 219 EALMHDGKALQSGTSHNFGDGFAKAFGVQYTDANNKLQYVHQTSWGM-STRIIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ +I I    +   +  +++ A LS+    V  DD  +  G +F
Sbjct: 278 GDDSGLVLPPRIAPTQVMIIPINQKKEGVLEKAQEVKAALSEK-FTVKLDDSNKNPGWKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  ++ G P+++ +G K +   +  I  R    +  +SL+ +          
Sbjct: 337 SEQEMRGIPVRIEIGPKDIEAGQAVIVRRDNREKTVVSLDNITEAVGEILEK 388


>gi|229176981|ref|ZP_04304376.1| Prolyl-tRNA synthetase 2 [Bacillus cereus 172560W]
 gi|229188661|ref|ZP_04315700.1| Prolyl-tRNA synthetase 2 [Bacillus cereus ATCC 10876]
 gi|228594850|gb|EEK52630.1| Prolyl-tRNA synthetase 2 [Bacillus cereus ATCC 10876]
 gi|228606456|gb|EEK63882.1| Prolyl-tRNA synthetase 2 [Bacillus cereus 172560W]
          Length = 476

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++ A + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQAHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E + ++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQLEERIPALLEE 386


>gi|254447045|ref|ZP_05060512.1| prolyl-tRNA synthetase [gamma proteobacterium HTCC5015]
 gi|198263184|gb|EDY87462.1| prolyl-tRNA synthetase [gamma proteobacterium HTCC5015]
          Length = 522

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 70/186 (37%), Positives = 105/186 (56%), Gaps = 3/186 (1%)

Query: 260 SDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+ N +  D  P+        RGIEVGHIF  GTKYS  M AT    +GKD  + MG Y
Sbjct: 337 ADLRNIQAGDPSPDGAGHIEIVRGIEVGHIFQLGTKYSESMGATVLDENGKDSVMTMGCY 396

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKVG 376
           GIG  RV+AA IE +HD KGI+WPD++APFK++++ +     +  RD  E++Y +    G
Sbjct: 397 GIGVTRVIAAAIEQNHDNKGIVWPDNIAPFKLAIVPLNQNKSERVRDYAEELYRQCQSKG 456

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD   + G +FA  +L+G P +++VG + + +  +E K R      D+ L+++  
Sbjct: 457 IDVVLDDRDARPGVKFADIELVGIPHRIVVGDRGLDNGALEYKGRGDADSRDIPLDQLDE 516

Query: 437 YASHRF 442
                 
Sbjct: 517 LLQSLV 522



 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 109/255 (42%), Positives = 152/255 (59%), Gaps = 9/255 (3%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGP 108
            L  V AI+REE N  G +E+ +PT+Q  +LW ESGR + YG E+LRL+DR+++   YGP
Sbjct: 1   MLKKVEAIVREEMNSAGGVELLMPTIQPTELWQESGRLEQYGPELLRLSDRHERPFCYGP 60

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           THEEV+TD+ R  IKSY+ LP  FYQIQLKFRDE+RPRFGVMR+REF+MKDAYSF L  +
Sbjct: 61  THEEVITDLARREIKSYKQLPVNFYQIQLKFRDEIRPRFGVMRAREFVMKDAYSFHLDAD 120

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
             +++Y  M+ +Y  IF RLGL+   + A++G IGG+ SHEF VLAD+GE  +    D  
Sbjct: 121 SLQNTYEAMYRAYSNIFTRLGLRFRAVHADTGSIGGNASHEFHVLADSGEDAIAFCPD-S 179

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           D+    E     + ++ ++     TA    T+    + + D   +    +        I 
Sbjct: 180 DYAANVE---LAECLAPSAERPTATAAMEKTATPQAKTIEDLCQQFDLTA-----SQTIK 231

Query: 289 YFGTKYSLPMSATFK 303
               + S    A F 
Sbjct: 232 TLIVEASEECDADFV 246


>gi|159900080|ref|YP_001546327.1| prolyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|226701298|sp|A9B562|SYP_HERA2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|159893119|gb|ABX06199.1| prolyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 566

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 89/235 (37%), Positives = 134/235 (57%), Gaps = 1/235 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F   L+E P +AE+A+H+L+LR G+  Q   G  + LPLG +    + AI+  E
Sbjct: 1   MRMSSGFGRTLREAPSEAELAAHQLILRAGLARQLLAGGMALLPLGMRVFRRIEAIMHAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA E   P + +A LW ++GRY  YG+ MLR  +RN +A+++ PTHEE + ++ R 
Sbjct: 61  LAAIGAGEFRTPVVHAASLWEQTGRYAQYGEAMLRFNNRNQQALLFAPTHEEAVAELARR 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SYR LP   YQI  K+RDELR R G++R REF M DAYS D    G    Y+++ ++
Sbjct: 121 EVDSYRQLPSLLYQIHTKYRDELRVRGGLLRLREFTMLDAYSLDTDWAGLDMVYDRVALA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +  IF R G++   + A+ G +GG    E++  + +GE  +        +   SE
Sbjct: 181 FETIFERCGVRFTAVEADGGEMGGREPREYMAFSSSGEDSLVVCPLCS-YAANSE 234



 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/185 (37%), Positives = 109/185 (58%), Gaps = 3/185 (1%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N +  D+ P         RGIE+GHIF  GT+Y+  + AT+    G+   + MG
Sbjct: 378 VVADIANVEEGDACPVCGAALSLERGIEIGHIFKLGTRYTEALGATYLDPQGQAQPIVMG 437

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R++  +IE  HD KGI+WP SVAPF + L+ + A      +A  ++Y +LS+ 
Sbjct: 438 SYGIGLERLLQVIIEQHHDEKGIVWPASVAPFDLHLVQLGA-SATVSEAANQLYQQLSEA 496

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V +DD  E  G +F  ADLLG PL++ VG + +  + VE++ R TG+ E ++L++V+
Sbjct: 497 GLSVLYDDRNESAGVKFNDADLLGMPLRLTVGERGLKQNVVELRQRATGVVETIALDQVV 556

Query: 436 NYASH 440
               +
Sbjct: 557 KSIKN 561


>gi|256372009|ref|YP_003109833.1| threonyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008593|gb|ACU54160.1| threonyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 623

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 140/441 (31%), Gaps = 40/441 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +   I +   RD      +  L      +   G+  + P G      +    R      G
Sbjct: 214 WLTQIAEAERRDHRRLGQEQRLF-FFPREIGGGLPVFEPDGAWVRYRLEEFSRRIHFAAG 272

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            + +  P +    L+  SG    Y + M    + +D+     P    +    +R H +SY
Sbjct: 273 YVPVWTPHVTRGALFELSGHLGWYRESMYPAMELDDEEYFLKPMSCPMHILAYRQHPRSY 332

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP   +++   +R E      G+ R R     DA+ F    + +      +    +R+
Sbjct: 333 RELPLRLFELATVYRYERSGTLHGLARVRSLTQDDAHIFCRGDQLADEL-TGVLDLAMRL 391

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               GL        + P     S E                   +F   +  +  +    
Sbjct: 392 LGAFGLNDFEAELSTRPAKSVGSDE-----------------DWEFATSAARSALERSGL 434

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATF 302
              + E   A YA   D+H   L D++    ++S   +++     F  G + +       
Sbjct: 435 TYRVAEGEGAFYAPKIDIH---LRDAIGRRWQLSTVQVDLQLPQRFDLGYQGADNR---- 487

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                 +    +     G++    A++    DG+   W        + + +         
Sbjct: 488 -----MERPFMIHRALFGSVERFLAILIEHFDGELPPWLVREPVRILPVAH------EAA 536

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E++ A L   G         E +G++   A     P  V+VG+  V+   V +    
Sbjct: 537 GWAEEVRAALVAAGVGAQVVAADEPLGARVRRARTERVPYIVVVGNDDVAAHSVGLTRPD 596

Query: 423 TGIREDMSLEEVINYASHRFS 443
                 ++LE  I+  +   +
Sbjct: 597 RSQARGVALETAIDEIARAVA 617


>gi|220927802|ref|YP_002504711.1| prolyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|259511589|sp|B8I5R4|SYP_CLOCE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219998130|gb|ACL74731.1| prolyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 478

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 152/417 (36%), Gaps = 67/417 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMVIKPYGYAIWENIQKSLDTRFKETGHENVYMPMFIPESLLLKEKEHVEGFAPEVAWV 98

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + + + I+SYR+LP  + Q     R E   R   +R+
Sbjct: 99  THGGDEKLTERLCVRPTSETLFCEHYSNSIQSYRDLPKLYNQWCSVVRWEKTTRP-FLRT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M   Y                               
Sbjct: 158 LEFLWQEGHTAHATAEEAQEETIRMLNVY------------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E  +                    I    +  E++   +A  +            
Sbjct: 187 -ADVLENVLAI----------------PVIKGRKTEKEKFAGAHATYT-----------V 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FG  ++      +   + +  YV   S+G+   R++ A+I   
Sbjct: 219 ESLMHDGKALQSGTSHNFGDGFAKAFDIQYTDKNNQLQYVHQTSWGV-TTRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P ++AP ++ +I +  H +   +   ++  +LS     V  DD  +  G +F
Sbjct: 278 GDDSGLVLPPAIAPTQLVIIPVSQHKEGVLEKANELKQKLSAK-FRVKMDDSDKMPGWKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  ++ G PL++ +G K +  ++  +  R    +  +SL+ +     +  ++ +  L
Sbjct: 337 SEYEMKGVPLRIEIGPKDIEKNQAVLVRRDNREKIFVSLDNLEETVVNTLADVQKSL 393


>gi|206968558|ref|ZP_03229514.1| prolyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|206737478|gb|EDZ54625.1| prolyl-tRNA synthetase [Bacillus cereus AH1134]
          Length = 476

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 149/412 (36%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y+                              
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLYVS----------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 187 ---------FCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++ A + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQAHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E + ++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQLEERIPALLEE 386


>gi|254973701|ref|ZP_05270173.1| prolyl-tRNA synthetase [Clostridium difficile QCD-66c26]
 gi|255091091|ref|ZP_05320569.1| prolyl-tRNA synthetase [Clostridium difficile CIP 107932]
 gi|255312746|ref|ZP_05354329.1| prolyl-tRNA synthetase [Clostridium difficile QCD-76w55]
 gi|255515507|ref|ZP_05383183.1| prolyl-tRNA synthetase [Clostridium difficile QCD-97b34]
 gi|255648599|ref|ZP_05395501.1| prolyl-tRNA synthetase [Clostridium difficile QCD-37x79]
 gi|306518723|ref|ZP_07405070.1| prolyl-tRNA synthetase [Clostridium difficile QCD-32g58]
          Length = 481

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/406 (17%), Positives = 144/406 (35%), Gaps = 67/406 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD---- 98
           P G    + +   + ++   TG      P L    L   E+   + +  E+  +      
Sbjct: 46  PYGYALWEKMQEFMDKKFKETGHKNCYFPLLIPESLLNKEAEHVEGFAPEVAWVTHGGNK 105

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           + ++ +   PT E ++  ++   +KSYR LP+ + Q     R E   R  + R+ EFL +
Sbjct: 106 KLEERLCVRPTSETIICTMYAKWLKSYRELPYLYNQWCSVVRWEKSTRPFL-RTSEFLWQ 164

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T E ++    +    Y                                     
Sbjct: 165 EGHTLHETAEEAQEETIQQLEVYK------------------------------------ 188

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                        +  E      +    S  E++       +            E     
Sbjct: 189 ------------ALCEELLAMPVVAGQKSESEKFAGGERTYT-----------IEAMMHD 225

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   +G        S+G  + R++  +I +  D +G+
Sbjct: 226 GKALQSGTSHFLGQHFTKAFDITFADREGNLANPYHTSWGA-STRLIGGLIMTHSDNRGL 284

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           + P  VAP ++ ++ I A      +  +KIYA L   G  V  DD      G +F   ++
Sbjct: 285 VLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLKTKGVAVEVDDRDNYTTGWKFNEWEM 344

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G P++V +G K + +++  +  R T  ++ M LE + +     F 
Sbjct: 345 KGAPVRVEIGPKDIENNQAMVFRRDTLEKDSMPLEGLADAICDLFD 390


>gi|229107523|ref|ZP_04237275.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-28]
 gi|228675915|gb|EEL31008.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-28]
          Length = 476

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 149/412 (36%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                           E++ 
Sbjct: 156 TEFLWQEGHTIHETGEESQAETLNILNLY----------------------ASFCEEYLA 193

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        I    +  E++    A  +            
Sbjct: 194 --------------------------IPVIKGQKTEKEKFAGAKATYT-----------I 216

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 217 ESLMHDGKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPLQVVIVPIAQHKEGVLEKATELQGRIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPSLLEE 386


>gi|258578341|ref|XP_002543352.1| threonyl-tRNA synthetase [Uncinocarpus reesii 1704]
 gi|237903618|gb|EEP78019.1| threonyl-tRNA synthetase [Uncinocarpus reesii 1704]
          Length = 653

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 81/436 (18%), Positives = 141/436 (32%), Gaps = 56/436 (12%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D         L    +  +S G   + P G   L+ + A +R +  + G  E+  PT+  
Sbjct: 185 DHRTIGAAQDLFATSL--YSPGSPLFQPNGTHILNKLLAFLRAQYRQYGFQEVLTPTIYK 242

Query: 77  ADLWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTDIFRSHIKS 124
             LW  SG + +Y  +M  +  R             D++    P +      +F+S   S
Sbjct: 243 KSLWELSGHWQNYKDDMYEVRGRGATGETTHGEIGEDESYGLKPMNCPGHCLLFKSQKWS 302

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  +       R+E+     G+ R R F   D + F    +  +            
Sbjct: 303 YRDLPVRYADFSPLHRNEVSGSLSGLTRVRRFHQDDGHIFCRPQQIGRE-IQLALKFTDT 361

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    GL    +   + P                E     S +  D          +   
Sbjct: 362 VMKTFGLGEYKLVLSTRP----------------EKDFIGSLELWDAAEKQLKDALEKSG 405

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D    +L DS  +  ++S   +++     FG +Y +P      
Sbjct: 406 RNWEINEGDGAFYGPKIDF---QLQDSDGKFHQLSTIQLDMNLPQRFGLEYMVPEGEEDY 462

Query: 304 GA--DGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPF---KISLINIKAH 357
            A  DGK   V +     G+  R  A +IE  +           A           +KA 
Sbjct: 463 NASTDGKGTPVLIHRAIFGSLERFFALLIEHYNGRWPFWLSPRQAIILTVNQDDDVLKAA 522

Query: 358 DQVCRDAC--EKI----YARLSK---------VGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           D+     C  ++I       L               V  D     +  +   A ++ + L
Sbjct: 523 DEAAAKMCGYQRIPFHEANELEAPSQPLSPLQPSFHVTVDKSARSLAKKIREAQIMKYNL 582

Query: 403 QVIVGSKFVSDSKVEI 418
             ++G K ++D  V++
Sbjct: 583 IFVIGPKNLADGSVDV 598


>gi|254724859|ref|ZP_05186642.1| prolyl-tRNA synthetase [Bacillus anthracis str. A1055]
          Length = 510

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R   +R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP-FLRT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 386


>gi|30018647|ref|NP_830278.1| prolyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|229125889|ref|ZP_04254914.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-Cer4]
 gi|81435975|sp|Q81IE9|SYP2_BACCR RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|29894188|gb|AAP07479.1| Prolyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|228657547|gb|EEL13360.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-Cer4]
          Length = 476

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++ A + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVLPPKVAPVQVVIVPIAQHKEGVLAKATELQAHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E + ++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQLEERIPALLEE 386


>gi|170759289|ref|YP_001788660.1| prolyl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|259511588|sp|B1L224|SYP_CLOBM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|169406278|gb|ACA54689.1| proline--tRNA ligase [Clostridium botulinum A3 str. Loch Maree]
          Length = 478

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +  +    G   +S+P     +L   E    + +  E+  +
Sbjct: 39  GCMIIRPNGYAIWENIQKYVDTKLKEYGHENVSMPIFIPENLLQKEKDHVEGFAPEVAWV 98

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D  +       PT E +  + +   ++SY++LP  + Q     R E   R  + R+
Sbjct: 99  THGGDDELAERLCVRPTSETLFCEHYAKIVQSYKDLPKLYNQWCSVVRWEKTTRPFL-RT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    K+   Y R+          M A    +G     E   
Sbjct: 158 TEFLWQEGHTIHETKEEAESHSLKILNMYSRLCED-------MLAMPVVMGKKTEKEKFA 210

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD                                        Y   S +H+        
Sbjct: 211 GADDT--------------------------------------YTIESLMHD-------- 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G   Y G  +S   +  F   +GK  Y    ++ +   R++ A+I   
Sbjct: 225 ------GKALQAGTSHYLGQNFSKAFAIQFSDRNGKLEYPHYTTWAV-TTRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+  P  +AP +  +I +  H +   +  +++  +L+KV   V  DD  +  G ++
Sbjct: 278 GDDSGLKLPPRIAPTQAVIIPVAQHKEGVLEKAKELKEKLAKV-VRVKLDDSDKMPGWKY 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  ++ G PL++ +G K +  ++  +  R    +  +SL+E+          
Sbjct: 337 SEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEIEIKVQEMLDT 388


>gi|255957075|ref|XP_002569290.1| Pc21g23230 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591001|emb|CAP97220.1| Pc21g23230 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 515

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 145/440 (32%), Gaps = 64/440 (14%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           P D         L T  +  +S G   +LP G   ++ + + +R +  + G  E+  PT+
Sbjct: 49  PTDHRALGTAQELFTSSV--YSPGSPLFLPNGTHVVNKLISFLRTQYLQYGFREVLTPTI 106

Query: 75  QSADLWVESGRYDSYGKEMLRLADR-----------NDKAMIYGPTHEEVMTDIFRSHIK 123
               LW  SG + +Y  +M  +  R            D++    P +      +F+S   
Sbjct: 107 YKKSLWEISGHWQNYKDDMYEVTGRGASGEADGEVGEDESYGLKPMNCPGHCLLFKSQNH 166

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR++P  +       R+E+     G+ R R F   D + F    +              
Sbjct: 167 SYRDMPVRYADFSPLHRNEVSGSLTGLTRVRRFHQDDGHIFCRRQQIKSE-IASALGFVD 225

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                 GL    +   + P                ET    + +  D          D  
Sbjct: 226 MAMKTFGLGPYRLVLSTRP----------------ETDYIGTLEMWDNAEMQLREALDST 269

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSA 300
               ++ E   A Y    D+   +L D   +  ++S   +++     F    + +     
Sbjct: 270 GREWALNEGDGAFYGPKIDI---QLQDQAGKYHQLSTIQLDMNLPQRFGLEYQVAESEPD 326

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                 G    V +     G++    A++    +  G  WP  ++P +  ++ +   D V
Sbjct: 327 YNPATPGVATPVMIHRAIFGSLERFLALLI---EQHGGHWPFWLSPRQAIVLTVNQDDAV 383

Query: 361 CRDACEKIYARLSKVGCD----------------------VFWDDMGEQIGSQFAVADLL 398
            R   ++  A+    G                        V  D   + +G +   A  +
Sbjct: 384 VRQ-AQEAAAKF--AGFRALLNDGTAEPPRPLSSVDSTFLVDVDTSAQTLGKKIQRAKQM 440

Query: 399 GFPLQVIVGSKFVSDSKVEI 418
            + L  I+GS+ ++D  + +
Sbjct: 441 KYNLIFILGSRDLADGGITV 460


>gi|291533207|emb|CBL06320.1| Prolyl-tRNA synthetase [Megamonas hypermegale ART12/1]
          Length = 253

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 69/188 (36%), Positives = 101/188 (53%), Gaps = 2/188 (1%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+      D  P          GIEVG +F  G KYS  + ATF   +GK+  + MG 
Sbjct: 65  VADIRLIAEEDPCPHCGAPVKMTHGIEVGQVFKLGIKYSKALGATFLDENGKEKPLIMGC 124

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R +AA IE  HD  GIIWP S+APF++ ++ I A D+      EK+YA +  VG
Sbjct: 125 YGIGVSRTMAAAIEQFHDDNGIIWPASIAPFEVVIVPINAKDEAQMQIAEKLYADMKNVG 184

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD  ++ G +F  ADL+G+P+++ V  K +  ++VEIK R  G   ++ +++   
Sbjct: 185 IDVLLDDRKDRAGVKFKDADLIGYPVRITVSPKLLDANEVEIKVRRDGATSNVKVDDCAQ 244

Query: 437 YASHRFSN 444
                  N
Sbjct: 245 TVKDMLKN 252


>gi|228956855|ref|ZP_04118640.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228802896|gb|EEM49729.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 502

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   T    + +P      L   E    + +  E+  +
Sbjct: 63  GCMILRPYGYALWENMQKVMDEKLKETDHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 122

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R   +R+
Sbjct: 123 THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP-FLRT 181

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 182 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 210

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 211 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 248

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 249 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 301

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++ A + KV   V  D   +  G +F
Sbjct: 302 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQAHIQKV-ARVKIDASNKTPGWKF 360

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E + ++++          
Sbjct: 361 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQLEERIPALLEE 412


>gi|328869252|gb|EGG17630.1| prolyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 642

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 98/225 (43%), Positives = 144/225 (64%), Gaps = 1/225 (0%)

Query: 4   SKYFLPILQENPRDAEI-ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           SK F+P++++ P D E+  S  LM +TGMI + S G+Y  LPL Q+A++N+  II EE  
Sbjct: 78  SKLFIPVVRDQPMDKEMSQSQLLMQKTGMIRRASLGMYMTLPLAQRAMENLIKIIDEEMQ 137

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  ++++P L S DLW ++GR+++ G E++++ DR ++     PTHEE+ T +  +  
Sbjct: 138 GVGGQKLTMPLLVSKDLWEKTGRWETTGAELIKVKDRKEEEYCLAPTHEEIFTSLVANER 197

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            S  N P   YQI  K+RDE+RPRFG++R REFLMKD YSFD T   +  +YN +  +Y 
Sbjct: 198 LSNSNFPLRLYQIGNKYRDEIRPRFGLVRGREFLMKDLYSFDQTRVEAVATYNDIKGAYH 257

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           R+F R+GLK   + A+SG IGG +SHEF VL  +GE  V   +  
Sbjct: 258 RVFDRVGLKYACVEADSGNIGGSMSHEFQVLTGSGEDTVVSCECC 302



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 8/179 (4%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           +    +  +    +     +    +GIEVGHIFY GTKYS  + A  K  +GK+  ++MG
Sbjct: 445 FRVVKEGDHCAQPNCSNGGELKLQQGIEVGHIFYLGTKYSSKLGANMKDKNGKNQPIEMG 504

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
            YGIG  R++AA+IES  D +GI+W   VAP+K  +I      ++   ++ E +Y  L +
Sbjct: 505 CYGIGVSRLLAAMIESKRDDRGIVWSKCVAPYKAIIIPFSDQRNRGSYESAEHLYDLLIR 564

Query: 375 VGC---DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSK-FVSDSK--VEIKHRLTGIR 426
                  +  ++     IG +   A+L+GFP  + V +     + +   E++ R  G +
Sbjct: 565 DPFLRNQIVLENRLDMSIGKRINEANLIGFPYLIFVNNNASKKNGEDVFEVEDRDNGQK 623


>gi|68487989|ref|XP_712153.1| hypothetical protein CaO19.6701 [Candida albicans SC5314]
 gi|68488040|ref|XP_712128.1| hypothetical protein CaO19.13993 [Candida albicans SC5314]
 gi|77023056|ref|XP_888972.1| hypothetical protein CaO19_6701 [Candida albicans SC5314]
 gi|46433496|gb|EAK92934.1| hypothetical protein CaO19.13993 [Candida albicans SC5314]
 gi|46433523|gb|EAK92960.1| hypothetical protein CaO19.6701 [Candida albicans SC5314]
 gi|76573785|dbj|BAE44869.1| hypothetical protein [Candida albicans]
          Length = 691

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/423 (17%), Positives = 142/423 (33%), Gaps = 75/423 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
            G Y   P      + +         + G      P   S   L  E    + +  E+  
Sbjct: 218 SGCYILRPNSYFVWETIQDWFNARIKKLGVQNTYFPMFVSQRVLEKEKDHIEGFAPEVAW 277

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D+ +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 278 VTRAGNSELDEHIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLR 337

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT + + +   ++   Y  ++                          
Sbjct: 338 TREFLWQEGHTAHLTKDAAANEVLQILDYYAGVYE------------------------- 372

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      +    +  E++    Y  T +         
Sbjct: 373 -----------------------ELLAVPVVKGKKTENEKFAGGDYTTTVEGFIAA---- 405

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIG-AMRVVAAV 328
                  + RGI+ G   + GT +S   + + +  +G +   +       G + RV+  +
Sbjct: 406 -------TGRGIQGGTSHHLGTNFSKMFNISVENPEGSEKPRIFAYQNSWGLSTRVIGVM 458

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFW 381
           I +  D KG++ P  +A ++  +I +        A  +   +  EKI   L   G  V  
Sbjct: 459 IMTHSDNKGLVLPPRIAQYQAVVIPVGLTSKSTDAQRKEINEGAEKIEQSLRANGIRVTG 518

Query: 382 DDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D       G +FA  +L G PL+   G K ++ ++V I  R  G +  + L+E+      
Sbjct: 519 DYREIYNPGWKFADWELKGVPLRFEFGPKDLAGNQVTIVRRNDGKKYTVKLDELDTEVPK 578

Query: 441 RFS 443
              
Sbjct: 579 LLD 581


>gi|167749838|ref|ZP_02421965.1| hypothetical protein EUBSIR_00806 [Eubacterium siraeum DSM 15702]
 gi|167657150|gb|EDS01280.1| hypothetical protein EUBSIR_00806 [Eubacterium siraeum DSM 15702]
          Length = 589

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 95/245 (38%), Positives = 139/245 (56%), Gaps = 4/245 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYS-WLPLGQKALDNVNAIIRE 59
           M+  K      +E P D +I SH +M+R G I   + GI+S + P  ++    +  IIRE
Sbjct: 16  MKLEKLVGDRFKERPSDCQIDSHAIMVRGGYIKYMANGIFSSYAPT-KRITKKIEQIIRE 74

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++    E+  P +  A LW ESGRY+S G E+LR  DRN   M+ G THEE    + R
Sbjct: 75  EMDKIDGQEVQFPVVMPASLWQESGRYESIGSELLRFTDRNRMPMVLGMTHEEAAVHLVR 134

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + KSY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E  +  Y+K   
Sbjct: 135 EYGKSYTKYPFMIYQIQTKFRDEARPRGGLIRVREFTMKDAYSFHTSQEDLEQYYDKCHK 194

Query: 180 SYLRIFHRLGLKSIPM-RAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENT 237
           +Y  IF R G+  +   +++SG +GG +SHEF++L   GE  +  C +   +  + + ++
Sbjct: 195 AYENIFRRAGVPEVISVKSDSGMMGGSISHEFMLLTPVGEDTIASCHECGFNANMEAADS 254

Query: 238 DFDDI 242
             ++ 
Sbjct: 255 IIENT 259



 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 102/201 (50%)

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L+   +     Y   + + +  +  +  ++    +RGIEVG+IF  GTKY+  M  T+ 
Sbjct: 382 GLDIDRDCANVEYHDFAKILDGGICPNCHKHSISISRGIEVGNIFQLGTKYTKTMGMTYL 441

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            ++G++    MG YGIG  R+ A+V E+ HD  G IWP  +AP+++ +  +++ D   + 
Sbjct: 442 DSNGEEKTPIMGCYGIGVGRLAASVCEAHHDDYGPIWPMPIAPWQVHICAVRSDDADVKA 501

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +K+Y  L   G +V +DD     G  F+ ADLLG PL+V+V  + + D+  EI  R  
Sbjct: 502 CADKLYDTLQNAGAEVIYDDRQVSAGVMFSDADLLGVPLRVVVSPRNLKDNCCEISARDK 561

Query: 424 GIREDMSLEEVINYASHRFSN 444
                + +EE  +        
Sbjct: 562 SFSYKVPVEETADKVQELIKE 582


>gi|237796784|ref|YP_002864336.1| prolyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657]
 gi|259511585|sp|C3KUV8|SYP_CLOB6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|229260679|gb|ACQ51712.1| proline--tRNA ligase [Clostridium botulinum Ba4 str. 657]
          Length = 478

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 148/411 (36%), Gaps = 67/411 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +  +    G   +S+P     +L   E    + +  E+  +
Sbjct: 39  GCMIIRPNGYAIWENIQKYVDTKLKEYGHENVSMPIFIPENLLQKEKDHVEGFAPEVAWV 98

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D  +       PT E +  + +   ++SY++LP  + Q     R E   R  + R+
Sbjct: 99  THGGDDELAERLCVRPTSETLFCEHYAKIVQSYKDLPKLYNQWCSVVRWEKTTRPFL-RT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    K+   Y R+          M A    +G     E   
Sbjct: 158 TEFLWQEGHTIHETKEEAESHSLKILNMYSRLCED-------MLAMPVVMGKKTEKEKFA 210

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD                                        Y   S +H+        
Sbjct: 211 GADDT--------------------------------------YTIESLMHD-------- 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G   Y G  +S   +  F   +GK  Y    ++ +   R++ A+I   
Sbjct: 225 ------GKALQAGTSHYLGQNFSKAFAIQFSDRNGKLEYPHYTTWAV-TTRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+  P  +AP +  +I +  H +   +  +++  RL+KV   V  DD  +  G ++
Sbjct: 278 GDDSGLKLPPRIAPTQAVIIPVAQHKEGVLEKAKELKERLAKV-VRVKLDDSDKMPGWKY 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +  ++ G PL++ +G K +  ++  +  R    +  +SL+E+         
Sbjct: 337 SEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEIEVKVQEMLD 387


>gi|229028244|ref|ZP_04184383.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH1271]
 gi|228733080|gb|EEL83923.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH1271]
          Length = 476

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLHILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQEHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E ++++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFIAMDQLEERIPALLEE 386


>gi|148381286|ref|YP_001255827.1| prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153932635|ref|YP_001385663.1| prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153936422|ref|YP_001389069.1| prolyl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|171769224|sp|A7FYU0|SYP_CLOB1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|172047866|sp|A5I768|SYP_CLOBH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148290770|emb|CAL84901.1| prolyl-tRNA synthetase 1 [Clostridium botulinum A str. ATCC 3502]
 gi|152928679|gb|ABS34179.1| prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152932336|gb|ABS37835.1| proline--tRNA ligase [Clostridium botulinum A str. Hall]
          Length = 478

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 148/411 (36%), Gaps = 67/411 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +  +    G   +S+P     +L   E    + +  E+  +
Sbjct: 39  GCMIIRPNGYGIWENIQKYVDTKLKEYGHENVSMPIFIPENLLQKEKDHVEGFAPEVAWV 98

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D  +       PT E +  + +   ++SY++LP  + Q     R E   R  + R+
Sbjct: 99  THGGDDELAERLCVRPTSETLFCEHYAKIVQSYKDLPKLYNQWCSVVRWEKTTRPFL-RT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    K+   Y R+   +        A    +G     E   
Sbjct: 158 TEFLWQEGHTIHETKEEAESHSLKILNMYSRLCEDM-------LAMPVVMGKKTDKEKFA 210

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD                                        Y   S +H+        
Sbjct: 211 GADDT--------------------------------------YTIESLMHD-------- 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G   Y G  +S   +  F   +GK  Y    ++ +   R++ A+I   
Sbjct: 225 ------GKALQAGTSHYLGQNFSKAFAIQFSDRNGKLDYPHYTTWAV-TTRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+  P  +AP +  +I +  H +   +  +++  +L+KV   V  DD  +  G ++
Sbjct: 278 GDNSGLKLPPRIAPTQAVIIPVAQHKEGVLEKAKELKEKLAKV-VRVKLDDSDKMPGWKY 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +  ++ G PL++ +G K +  ++  +  R    +  +SL+E+         
Sbjct: 337 SEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEIEIKVQEMLD 387


>gi|229068144|ref|ZP_04201451.1| Prolyl-tRNA synthetase 2 [Bacillus cereus F65185]
 gi|228714958|gb|EEL66826.1| Prolyl-tRNA synthetase 2 [Bacillus cereus F65185]
          Length = 476

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/412 (19%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  +I E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVIDEKLKGTGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++ A + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQAHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E + ++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQLEERIPALLEE 386


>gi|239624742|ref|ZP_04667773.1| prolyl-tRNA synthetase [Clostridiales bacterium 1_7_47_FAA]
 gi|239521128|gb|EEQ60994.1| prolyl-tRNA synthetase [Clostridiales bacterium 1_7_47FAA]
          Length = 479

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 144/412 (34%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMVIKPAGYAIWENIQNELDRRFKETGVQNVYMPIFIPESLLEKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +   + M   PT E +  D +   I SYR+LP  + Q     R E   R   +RS
Sbjct: 99  THGGLEPLQERMCVRPTSETLFCDFYAKDIHSYRDLPRVYNQWCSVVRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++    +M   Y                               
Sbjct: 158 REFLWQEGHTAHATAEEAEARTIQMLNVY------------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                 E      I    +  E++    A  +            
Sbjct: 187 -----------------AAFCEEVLAIPVIKGQKTDKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FG  ++      F   D    YV   S+G+   R++ A+I   
Sbjct: 219 ESLMHDGKALQSGTSHNFGDGFAKAFDIQFTDKDNTLKYVHQTSWGM-TTRMIGALIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ ++ ++   +   D   ++  RL K G  V  DD  +  G +F
Sbjct: 278 GDDNGLVLPPRIAPVQVMIVPVQQQKEGVLDKAFQLEDRLKKAGFSVKTDDSEKSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  ++ G PL+V +G K +  ++  +  R T  +  +SL+E+    S     
Sbjct: 338 ADCEMRGIPLRVEIGPKDMEKNQAVLVRRDTHEKSFISLDELETKVSEMLDT 389


>gi|91772258|ref|YP_564950.1| prolyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
 gi|121689406|sp|Q12ZC6|SYP_METBU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|91711273|gb|ABE51200.1| Prolyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
          Length = 478

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 85/418 (20%), Positives = 152/418 (36%), Gaps = 67/418 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG Y W P G     NV  IIR   ++    E   P L    +   E+     + 
Sbjct: 32  VRYPVKGSYVWYPFGFSIRRNVYDIIRGLLDK-DHQETLFPLLIPENEFMKEAEHIKGFE 90

Query: 91  KEMLRL----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           +E+  +        D  +   PT E  +  ++R  ++S+ +LP   YQI   FR E +  
Sbjct: 91  EEVYWVLNGGTTPLDVKLALRPTSETAIYPMYRLWVRSHADLPLKLYQIVNTFRYETKHT 150

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
             ++R RE                                          A +     D 
Sbjct: 151 RPLIRLREIT------------------------------------SFKEAHTVHATWDE 174

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                  +   E      + +    IP           L S    W     A   +  + 
Sbjct: 175 -----AASQVEEAIRLYIEFYKRLAIPV----------LPSKRPSWDKFPGADYTIAVDS 219

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           L    P+ K      ++VG   + G  ++      ++  DG+  Y     YG+ + R +A
Sbjct: 220 LM---PDGK-----TLQVGTAHHLGDNFAKTFDIKYEDVDGEQVYAHQTCYGV-SERCIA 270

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMG 385
            ++ +  D KG++ P  VAP ++ +I I   + +   +AC  + A L   G  V  DD  
Sbjct: 271 TLLSTHGDDKGLVLPPEVAPTQVVIIPIIFKEPEAVLNACNDVKAELEAAGVRVTIDDSD 330

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++ GS++   ++ G PL++ +G + + +    +  R TG +E + L  + +    RF 
Sbjct: 331 KRPGSKYYKWEMKGVPLRIEIGPRDLKNEAAMLARRDTGEKEQVPLASIKDEVLSRFK 388


>gi|30260563|ref|NP_842940.1| prolyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47525667|ref|YP_017016.1| prolyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183410|ref|YP_026662.1| prolyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|227813066|ref|YP_002813075.1| prolyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|254686784|ref|ZP_05150642.1| prolyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254738991|ref|ZP_05196693.1| prolyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744578|ref|ZP_05202257.1| prolyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254756164|ref|ZP_05208193.1| prolyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254761982|ref|ZP_05213831.1| prolyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|81584321|sp|Q81Z76|SYP2_BACAN RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|30253931|gb|AAP24426.1| proline--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47500815|gb|AAT29491.1| prolyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177337|gb|AAT52713.1| prolyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|227002361|gb|ACP12104.1| proline--tRNA ligase [Bacillus anthracis str. CDC 684]
          Length = 508

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 386


>gi|301106649|ref|XP_002902407.1| prolyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
 gi|262098281|gb|EEY56333.1| prolyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
          Length = 764

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/431 (17%), Positives = 138/431 (32%), Gaps = 70/431 (16%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           ++GMI  +   G Y   P   +  + V   +       G      P   + + L  E   
Sbjct: 281 KSGMIDYYDVSGCYILRPYSYEIWERVQQFLDRNLKAIGVKNCYFPMFVTKEKLEKEKDH 340

Query: 86  YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +    +  +       PT E +M   F++ I+S+R+LP    Q     R 
Sbjct: 341 LEGFAPEVAWVTKSGNSELKDPIAIRPTSETIMYPAFKNWIRSHRDLPMKLNQWNNVVRW 400

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +R+REFL ++                                          
Sbjct: 401 EFKNPTPFLRTREFLWQEG----------------------------------------- 419

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                 H      +  + +V    DF                      +   A Y  T +
Sbjct: 420 ------HTAHATKEEADEEVRAVLDFYAACYEELLAVPMIKGVKTEKEKFAGADYTTTIE 473

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                           + RGI+       G  +      T +  DGK       S+G   
Sbjct: 474 GFIPA-----------TGRGIQAATSHMLGQNFGKMFGITAEYEDGKKLIPWQNSWGF-T 521

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD----QVCRDACEKIYARLSKVGC 377
            R +  +I    D KG++ P  VAP ++ ++ I   +    +      ++I A+L+  G 
Sbjct: 522 TRSLGVMIMVHGDDKGLVLPPRVAPTQVIVVPIPFKNQDEVEEIFAKADEIVAKLADAGV 581

Query: 378 DVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +  D       G ++   +L G PL+  VG K ++  +V +  R  G +ED+   E+  
Sbjct: 582 RIEADKRCVYTPGWKYNHWELKGVPLRFEVGPKDIAKKQVRVVRRDNGAKEDIPEAELAT 641

Query: 437 YASHRFSNNRP 447
                    + 
Sbjct: 642 RIPALLEQIQQ 652


>gi|303318040|ref|XP_003069022.1| threonyl-tRNA synthetase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240108703|gb|EER26877.1| threonyl-tRNA synthetase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|320036822|gb|EFW18760.1| threonyl-tRNA synthetase [Coccidioides posadasii str. Silveira]
          Length = 598

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 132/436 (30%), Gaps = 63/436 (14%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  I      L        S G   + P G    + + + +R +  + G  E+  PT+  
Sbjct: 132 DHRIIGTDQDLFG--STPFSPGSPYFHPDGAHIFNKLMSFLRAQYKQYGFEEVITPTMYK 189

Query: 77  ADLWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTDIFRSHIKS 124
             LW +SG +  Y  +M  +  R             D+     P +      +F S  +S
Sbjct: 190 KSLWEKSGHWHIYKDDMYEVRGRGATGQTVDVEIGEDEQYGLKPMNCPGHCVLFASKTRS 249

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  F +     R+E+     G+ R R F   D + F    +  +            
Sbjct: 250 YRSLPVRFAEFSPLHRNEISGSLSGLTRVRRFHQDDGHIFCRPEQIERE-IELTLQFTES 308

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    GL+   +   + P                E     S    +          D   
Sbjct: 309 VLSTFGLEDYRLVLSTRP----------------EKDYLGSLALWNDAENQLKDALDKSG 352

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D+   ++ DS  +  ++S   +++     FG +Y +P + T  
Sbjct: 353 KPWHINEGDGAFYGPKIDL---QIRDSRGKYHQLSTIQLDMNLPQRFGLEYVVPGTETDV 409

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHD-GKGIIWPDSVAPFKISLINIKAHDQVCR 362
               K   V +     G++    A++   ++                       +D    
Sbjct: 410 NGPRKATPVLIHRAIFGSLERFFALLAEHYNGRWPFWLSPRQGIILTV-----NNDPQVL 464

Query: 363 DACEKI------YARLS----------------KVGCDVFWDDMGEQIGSQFAVADLLGF 400
              + +      Y  L+                +    +  D     +G +   A    +
Sbjct: 465 RTAQTVASGMRGYQSLTFNESEVVATPGLLYPAQATFQIDVDTSSRSLGKKIREAMGRKY 524

Query: 401 PLQVIVGSKFVSDSKV 416
            L  ++G   VS+  V
Sbjct: 525 KLVFVIGPSDVSNGSV 540


>gi|228919324|ref|ZP_04082694.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840431|gb|EEM85702.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 502

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 63  GCMILRPYGYALWENMQKVMDEKLKGTGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 122

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R   +R+
Sbjct: 123 THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP-FLRT 181

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 182 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 210

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 211 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 248

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 249 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 301

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++ A + KV   V  D   +  G +F
Sbjct: 302 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQAHIQKV-ARVKIDASNKTPGWKF 360

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +   +V +  R T  +E + ++++          
Sbjct: 361 NEYEMKGIPIRLEVGPKDIEKKQVVLVRRDTKEKEFVPMDQLEERIPALLEE 412


>gi|313212369|emb|CBY36357.1| unnamed protein product [Oikopleura dioica]
          Length = 847

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 148/433 (34%), Gaps = 76/433 (17%)

Query: 13  ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E  +D ++ +   + + + G+I  +   G Y  LP      +++     +     G    
Sbjct: 338 EAKKDEDLPTWFQQTITKAGLIEYYDVSGCYVLLPPSYNIWEHIKDFFDKNIKDLGVENC 397

Query: 70  SVPTLQS-ADLWVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKS 124
             P   S A L  E    + +  E+  +    D  +       PT E VM  I+    +S
Sbjct: 398 YFPMFVSQAALEKEKEHIEDFAPEVAWVTRSGDTELAEPIAIRPTSETVMYPIYAKRCQS 457

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+LP    Q     R E +     +R+REFL ++ +S   T   ++    ++   Y ++
Sbjct: 458 HRDLPIKMNQWCNVVRWEFKHPTPFLRTREFLWQEGHSAFATKAEAEVEVMQILDLYRQV 517

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +  L   +                                       +P   T  +    
Sbjct: 518 YEDLLAIAT--------------------------------------VPGRKTVKEKFA- 538

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                      Y  T + + +            + R I+     + G  +S   + +F+ 
Sbjct: 539 --------GGDYTTTVEAYIKA-----------AGRAIQGATSHHLGQNFSKMFNISFED 579

Query: 305 A---DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA----- 356
                G   +    S+GI   R +  +I    D KG++ P  V+ +++ ++   A     
Sbjct: 580 ESKGKGIKEFAYQNSWGI-TTRTIGVMIMVHADDKGLVIPPKVSRYQVVIVPCGATKTDE 638

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                 +AC+ +  +L   G     D   ++  G +F   +L G PL++ VG K +  + 
Sbjct: 639 DKNKLFNACKALENQLKSFGIRAHADLRDDKKPGWKFNDWELKGVPLRIEVGPKDLEANS 698

Query: 416 VEIKHRLTGIRED 428
                R T  +  
Sbjct: 699 AVFVRRDTLEKVT 711


>gi|255034032|ref|YP_003084653.1| prolyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
 gi|254946788|gb|ACT91488.1| prolyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
          Length = 491

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/435 (17%), Positives = 158/435 (36%), Gaps = 84/435 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   + +    TG      P       L  E+   + + KE   +
Sbjct: 33  GCMVIKPYGYSIWEKMQRALDDMFKETGHTNAYFPLFIPKSYLSKEASHVEGFAKECAVV 92

Query: 97  AD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                               + ++ +I  PT E V+   +++ I+SYR+LP    Q    
Sbjct: 93  THYRLKNDPDGKGVIVDPDAKLEEELIVRPTSETVIWSTYKNWIQSYRDLPLLINQWANV 152

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E+R R  + R+ EFL ++ ++   T + +     +M                     
Sbjct: 153 VRWEMRTRLFL-RTAEFLWQEGHTAHATAQEAIAETKQMLE------------------- 192

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                                 V+         +P        I  + +  E++      
Sbjct: 193 ----------------------VYAQFAEEWMAVPV-------IKGVKTANERFAG---- 219

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                         E      + ++ G   + G  ++      F+  +GK  YV   S+G
Sbjct: 220 -------AEDTYCIEAMMQDGKALQAGTSHFLGQNFANAFDVKFQDKEGKLDYVWGTSWG 272

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKV 375
           + + R++ A+I +  D  G++ P  +AP ++ ++ I  +D+      EK+      L K+
Sbjct: 273 V-STRLMGALIMAHSDDAGLVLPPKLAPIQVVIVPIYRNDEQLAQISEKVAEITKDLKKL 331

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +D     + G +FA  +L G P+++ +G + + +  VE+  R T  +E +S+  +
Sbjct: 332 GISVKYDSSDNAKPGFKFAEYELKGVPVRLAMGGRDLENGTVEVARRDTKTKETVSVAGI 391

Query: 435 INYASHRFSNNRPVL 449
             Y  +  ++ +  +
Sbjct: 392 AAYVQNLLNDIQESI 406


>gi|300119016|ref|ZP_07056727.1| prolyl-tRNA synthetase [Bacillus cereus SJ1]
 gi|298723632|gb|EFI64363.1| prolyl-tRNA synthetase [Bacillus cereus SJ1]
          Length = 476

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 386


>gi|49479045|ref|YP_034723.1| prolyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|81397340|sp|Q6HNZ7|SYP2_BACHK RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|49330601|gb|AAT61247.1| proline--tRNA ligase (prolyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 476

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 386


>gi|301052111|ref|YP_003790322.1| prolyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300374280|gb|ADK03184.1| prolyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 476

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F    GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRTGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 386


>gi|229154159|ref|ZP_04282283.1| Prolyl-tRNA synthetase 2 [Bacillus cereus ATCC 4342]
 gi|228629295|gb|EEK85998.1| Prolyl-tRNA synthetase 2 [Bacillus cereus ATCC 4342]
          Length = 502

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 63  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 122

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R   +R+
Sbjct: 123 THGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP-FLRT 181

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 182 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 210

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 211 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 248

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 249 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 301

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 302 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 360

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E ++++++          
Sbjct: 361 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFIAMDQLEERIPALLEE 412


>gi|323345462|ref|ZP_08085685.1| proline--tRNA ligase [Prevotella oralis ATCC 33269]
 gi|323093576|gb|EFZ36154.1| proline--tRNA ligase [Prevotella oralis ATCC 33269]
          Length = 493

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 92/461 (19%), Positives = 180/461 (39%), Gaps = 88/461 (19%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E  + A+  S     L+++  +  Q +  G     P G    + +   + +    TGA
Sbjct: 5   LKELTKRADNYSQWYNDLVVKADLAEQSAVRGCMVIKPYGYAIWEKMQQQLDKMFKETGA 64

Query: 67  IEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD------------------RNDKAMIYG 107
                P L     L  E+     + KE   +                    R D+ +I  
Sbjct: 65  QNAYFPLLIPKSFLSREAEHVKGFAKECAVVTHYRLKSSEDGRSVEVDPSARLDEELIIR 124

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           PT E ++ + +++ I S+R+LP    Q     R E+R R   +R+ EFL ++ ++   T 
Sbjct: 125 PTSETIIWNTYKNWIHSWRDLPLMCNQWCNVMRWEMRTRP-FLRTSEFLWQEGHTAHATR 183

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           E ++    +M   Y                                A+  E         
Sbjct: 184 EEAEEEAQQMLRVY--------------------------------AEFAEQ-------- 203

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
               +P               V+  T  +A   D +         E      + ++ G  
Sbjct: 204 -WMAVPVL-----------QGVKSETERFAGALDTYT-------IEAMMQDGKALQSGTS 244

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            + G  ++     T+   + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP 
Sbjct: 245 HFLGQNFAKSFDVTYLNKENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPRLAPI 303

Query: 348 KISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQ 403
           ++ +I I    +  +    K   I A L ++G +V +DD   ++ G +FA  +L G P++
Sbjct: 304 QVVIIPITKGIEQLQAISAKLSPIIASLRELGINVKYDDTDNKRPGFKFADYELKGVPVR 363

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +++G + + D+ +E+  R T  +E +SL+ +++Y  H   +
Sbjct: 364 LVMGGRDLEDNTIEVMRRDTLEKETVSLDGIVDYVKHLLDD 404


>gi|260437797|ref|ZP_05791613.1| proline--tRNA ligase [Butyrivibrio crossotus DSM 2876]
 gi|292809821|gb|EFF69026.1| proline--tRNA ligase [Butyrivibrio crossotus DSM 2876]
          Length = 479

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 149/412 (36%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   + P G    +N+ A + +    TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMIFKPAGYAIWENIKAELDKRFKETGVENVYMPMFIPESLLQREKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +   + M   PT E +  D ++  I+SYR+LP  + Q     R E   R   +RS
Sbjct: 99  TYGGLNPLQERMCVRPTSETLFCDFYKDEIQSYRDLPKVYNQWCSVVRWEKETRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++    +M   Y                       D   +F+ 
Sbjct: 158 REFLWQEGHTAHATAEEAEARTQQMLNLY----------------------ADFCEDFLA 195

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        +    +  E++    A  +            
Sbjct: 196 --------------------------IPVVRGRKTDKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG  ++      +   D K  YV   S+G+   R++ A+I   
Sbjct: 219 EALMHDGKALQSGTSHNFGDGFAKAFGIQYTDKDNKLKYVHQTSWGM-TTRLIGALIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ +I +        +   ++  +L K G  V  DD  +  G +F
Sbjct: 278 GDDSGLVLPPRVAPVQVDIIPVMQKKAGVLEKAAEVKEKLIKAGLRVKVDDSDKNPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  ++ G P+++ +G + +  ++  I  R T  +  +S++E+          
Sbjct: 338 SEQEMRGIPVRIEMGPRDIEANQAVIVRRDTREKTVVSIDELDVKVKEILDT 389


>gi|228937684|ref|ZP_04100320.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228970572|ref|ZP_04131222.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977142|ref|ZP_04137543.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis Bt407]
 gi|228782590|gb|EEM30767.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis Bt407]
 gi|228789159|gb|EEM37088.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821971|gb|EEM67963.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326938179|gb|AEA14075.1| prolyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 476

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E + ++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQLEERIPALLEE 386


>gi|218901598|ref|YP_002449432.1| prolyl-tRNA synthetase [Bacillus cereus AH820]
 gi|228925648|ref|ZP_04088737.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229120054|ref|ZP_04249309.1| Prolyl-tRNA synthetase 2 [Bacillus cereus 95/8201]
 gi|218539056|gb|ACK91454.1| prolyl-tRNA synthetase [Bacillus cereus AH820]
 gi|228663520|gb|EEL19105.1| Prolyl-tRNA synthetase 2 [Bacillus cereus 95/8201]
 gi|228834126|gb|EEM79674.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 476

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F    GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRTGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 386


>gi|228944201|ref|ZP_04106580.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228815590|gb|EEM61832.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 476

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F    GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRTGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKELISMDQLEERIPALLEE 386


>gi|228931896|ref|ZP_04094792.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827876|gb|EEM73614.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 476

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F    GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRTGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 386


>gi|196040211|ref|ZP_03107513.1| proline--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|229089515|ref|ZP_04220784.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-42]
 gi|196029066|gb|EDX67671.1| proline--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|228693822|gb|EEL47516.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-42]
          Length = 476

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 386


>gi|315925309|ref|ZP_07921520.1| proline--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621210|gb|EFV01180.1| proline--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 482

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 147/410 (35%), Gaps = 67/410 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    +N+          TG   M  P L    +   E+   + +  E+  +
Sbjct: 40  GFMVIRPYGYAIWENIKEAFDRRFKETGHKNMYFPLLIPESMLQTEAEHVEGFAPEVAWV 99

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                K +       PT E ++  ++   + SYR LPF + Q     R E   R  + R+
Sbjct: 100 TRGGGKELGERLAIRPTSETIICSMYSKWLNSYRQLPFKYNQWCNVVRWEKTTRPFL-RT 158

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M   Y                       +++ +F+ 
Sbjct: 159 SEFLWQEGHTLHETEEEARAETMQMLNIY----------------------REVTEDFMA 196

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +       V   K   +    +E T   + +  +                          
Sbjct: 197 I-----PMVVGQKSEKEKFAGAEATYTIEALMHDGQA----------------------- 228

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                    ++ G   Y G  ++     ++   + K       S+G+ + R++  +I   
Sbjct: 229 ---------LQSGTSHYLGQHFTKAFDISYLSRENKQENPYHTSWGV-STRLIGGLIMVH 278

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ +I + AH     +A  K+  +L KV      DD     G +F
Sbjct: 279 GDDNGLVLPPKIAPIQVVIIPVAAHKPRVAEAAGKLTDQLGKV-FRAELDDSDNSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              ++ G P+++ +G + +   +  +  R TG +  +SL+++  + +   
Sbjct: 338 NQWEMKGVPIRLEIGPRDLERGECVLARRDTGEKTAVSLDDIEAHVADLL 387


>gi|225573951|ref|ZP_03782596.1| hypothetical protein RUMHYD_02045 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038789|gb|EEG49035.1| hypothetical protein RUMHYD_02045 [Blautia hydrogenotrophica DSM
           10507]
          Length = 479

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 140/412 (33%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMVIKPAGYAIWENIQRELDRRFKETGVENVYMPLFIPESLLQKEKDHVEGFAPEVAWV 98

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E +  D +   I S+R+LP  + Q     R E   R  + RS
Sbjct: 99  THGGLEELQERLCVRPTSETLFCDFYARDIHSHRDLPKVYNQWCSVVRWEKTTRPFL-RS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++    +M   Y                               
Sbjct: 158 REFLWQEGHTAHATAEEAEERTIQMLNVYADFCE-------------------------- 191

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                 E      I    +  E++    A  +            
Sbjct: 192 ----------------------EELAIPVIKGRKTDKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FG  ++      +   D    YV   S+G+   R++ A+I   
Sbjct: 219 ESLMHDGKALQSGTSHNFGDGFAKAFGIQYADRDNTLKYVHQTSWGM-TTRMIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP +  +I I+   +   +  +++ A + K G  V  DD  +  G +F
Sbjct: 278 GDNSGLVLPPRIAPVQAMIIPIQQKKEGVLEKADEMMAAIKKAGIRVKVDDSDKSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  ++ G P+++  G K + + +  I  R T  +  +S E++          
Sbjct: 338 SEQEMRGIPVRIECGPKDIENGQAVIVRRDTREKIVVSFEDLAQKVQETLDT 389


>gi|241957631|ref|XP_002421535.1| proline--trna ligase, putative; prolyl-tRNA synthetase, putative
           [Candida dubliniensis CD36]
 gi|223644879|emb|CAX40877.1| proline--trna ligase, putative [Candida dubliniensis CD36]
          Length = 688

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/423 (17%), Positives = 141/423 (33%), Gaps = 75/423 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
            G Y   P      + +         + G      P   S   L  E    + +  E+  
Sbjct: 215 SGCYILRPNSYFVWETIQDWFNARIKKMGVQNTYFPMFVSQRVLEKEKDHIEGFAPEVAW 274

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D+ +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 275 VTRAGNSELDEHIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLR 334

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT + +     ++   Y  ++                          
Sbjct: 335 TREFLWQEGHTAHLTKDAAAEEVLQILDYYAGVYE------------------------- 369

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      +    +  E++    Y  T +         
Sbjct: 370 -----------------------ELLAVPVVKGKKTENEKFAGGDYTTTVEGFVAA---- 402

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIG-AMRVVAAV 328
                  + RGI+ G   + GT +S   + + +  +G +   +       G + RV+  +
Sbjct: 403 -------TGRGIQGGTSHHLGTNFSKMFNISVENPEGSEKPRIFAYQNSWGLSTRVIGVM 455

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFW 381
           I +  D KG++ P  +A ++  +I +        A  +   +  EKI   L   G  V  
Sbjct: 456 IMTHSDNKGLVLPPRIAQYQAVVIPVGLTSKSTDAQRKEINEGAEKIEQSLRANGIRVTG 515

Query: 382 DDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D       G +FA  +L G PL+   G K ++ ++V I  R  G +  + L+E+      
Sbjct: 516 DYREIYNPGWKFADWELKGVPLRFEFGPKDLAGNQVTIVRRNDGKKYTVKLDELDTQVPK 575

Query: 441 RFS 443
              
Sbjct: 576 LLD 578


>gi|330444263|ref|YP_004377249.1| prolyl-tRNA synthetase [Chlamydophila pecorum E58]
 gi|328807373|gb|AEB41546.1| prolyl-tRNA synthetase [Chlamydophila pecorum E58]
          Length = 577

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 103/392 (26%), Positives = 176/392 (44%), Gaps = 24/392 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F   L+   +DA + S++L+ + G + +  KGIY++ PL  + +     IIREE
Sbjct: 1   MRTSQLFYRTLKHTKKDA-VLSNELLEKAGYLWRIGKGIYTYTPLLWRVVLKFMEIIREE 59

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P L  A+ W+++GR+ ++  E  +  L DR  K     PTHEE+++ + 
Sbjct: 60  LNAIGGQELLLPILHPAEYWLQTGRWHAFVSENLLYHLIDREGKEHCLAPTHEEIVSALL 119

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +   + LP   YQ+  KFRDE+RPRFG++RSRE LM+D+Y+F  +PE     Y K+ 
Sbjct: 120 AQWLSGKKQLPLHLYQMAPKFRDEIRPRFGLIRSRELLMEDSYTFSDSPEQMDEQYQKLR 179

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV----------------F 222
           ++Y +IF RLGL    + A+ G IG   S EF VL   GE  +                 
Sbjct: 180 MAYSKIFDRLGLAYAIVNADGGKIGKGKSEEFQVLCSLGEDTICVSGDYSANIEAAPVAL 239

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
               + D  +P E      + ++ ++ E ++ P          KL  S  + ++  A GI
Sbjct: 240 PPYKYDDELLPMEEKSTPGVKTIEAVGEFFSQPLQKIVKTLVVKL--SFGKEEQFVAIGI 297

Query: 283 EVGHIFYFGTKYSLPM--SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
                       S      A F   +    ++++    +G +                 +
Sbjct: 298 RGDRQLNLTKVVSKFHADDAIFASDEEILTHLKVEKGFLGPLSCPIRFFADESLRPMTNF 357

Query: 341 PDSVAPFKISLINIKAHDQVCR-DACEKIYAR 371
             +     +  IN+     +   +  + + A+
Sbjct: 358 ICANNKKDMHCINVNWGRDLPEPEYADYLLAQ 389



 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 7/206 (3%)

Query: 237 TDFDDIISLNSIVEQWT--APYAATSDVHNEKLFDSLPENKRVSAR---GIEVGHIFYFG 291
              ++   ++ I   W    P    +D    +  D  P N  V  +   GIEV HIF  G
Sbjct: 358 ICANNKKDMHCINVNWGRDLPEPEYADYLLAQEGDLCPVNPDVPYKIFQGIEVAHIFNLG 417

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            +Y+    ATF+  +GK+    MG+YGIG  R +AA +E   D +GI+WP+ +APF IS+
Sbjct: 418 IRYTESFQATFQDEEGKERPCWMGTYGIGIGRTLAACVEQLSDSRGIVWPEIIAPFSISI 477

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +     D         +Y  L + GC+   DD  E++G +   +DL+G P ++I+G  + 
Sbjct: 478 LY-NGGDTPSEQVAYSLYQDLQQQGCEPLLDDRDERLGFKLKDSDLIGIPYKLIIGKAYH 536

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINY 437
           +   +EI+ R +G +  +  E  I++
Sbjct: 537 ASGILEIESR-SGEKFSVPPENFISW 561


>gi|68491354|ref|XP_710514.1| hypothetical protein CaO19.5685 [Candida albicans SC5314]
 gi|46431727|gb|EAK91259.1| hypothetical protein CaO19.5685 [Candida albicans SC5314]
          Length = 706

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/452 (16%), Positives = 151/452 (33%), Gaps = 46/452 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++   + +   RD      +  L   + ++ S G   WLP G +  + +   +R E  
Sbjct: 287 MTEHLKFLAEAAERDHRKIGREQELF--IFNEMSPGSAMWLPHGARIYNTLVDTLRTEYR 344

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + S  LW  SG + +Y + M       +      P +      +F+S  
Sbjct: 345 KRGYEEVITPNMYSTKLWETSGHWQNYKENMFSFEVEKET-FGLKPMNCPGHCILFKSRE 403

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP+      +  R+E      G+ R R F   DA+ F  T +        +F   
Sbjct: 404 RSYRELPWRVADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCTTDQIGTE-IAGVFDFL 462

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                               + G    EF +   T   +     D  +          +D
Sbjct: 463 K------------------KMYGIFGFEFKMELSTRPEKYVGDLDTWNSAEKKLEQALND 504

Query: 242 IISLNSI--VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +            A Y    D+    + D+L    + +   ++    F    ++ L   
Sbjct: 505 FLGEGKWELNPGDGAFYGPKIDIM---ISDALKRWFQCATIQLD----FQLPQRFELEYK 557

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                       V +    +G++  + A++    +     WP  ++P +I ++ +     
Sbjct: 558 ---SDKGPNTRPVMIHRAILGSVERMTAILT---EHYKGKWPFWLSPRQILIVPVGPK-- 609

Query: 360 VCRDACEKIYARLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              D  +K+  +L+         D  G  +  +     +  +    IVG +  +   V +
Sbjct: 610 -YYDYAQKLQKKLNDDYFFYCDVDVSGNTLPKKIRTGQMYKYNFIFIVGEEEENSESVNV 668

Query: 419 KHRL----TGIREDMSLEEVINYASHRFSNNR 446
           ++R      G    +  ++V+        + R
Sbjct: 669 RNRDIPEEQGKNAMVGFDDVVKQLVALRESKR 700


>gi|15605118|ref|NP_219903.1| prolyl-tRNA synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|6686306|sp|P36431|SYP_CHLTR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|3328819|gb|AAC67990.1| Prolyl tRNA Synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|297748523|gb|ADI51069.1| Prolyl-tRNA synthetase [Chlamydia trachomatis D-EC]
 gi|297749403|gb|ADI52081.1| Prolyl-tRNA synthetase [Chlamydia trachomatis D-LC]
          Length = 581

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 137/223 (61%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRMSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E  +  L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTI 223



 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 5/203 (2%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV---SARGIEVGHIFYFGTKYSLPMS 299
           +    +      P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S
Sbjct: 367 VHCKHVNWGRDIPLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFS 426

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             F+  +G      MG+YGIG  R +AA IE   D KG++WP +VAPF I+++     D 
Sbjct: 427 VGFQDKNGDKQLCWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVAPFSITILY-NGGDT 485

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  ++Y  L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+
Sbjct: 486 EGEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIE 545

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            R +G + ++S E ++++ S   
Sbjct: 546 SR-SGEKCNVSPENLLDWCSKNL 567


>gi|255532798|ref|YP_003093170.1| prolyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
 gi|255345782|gb|ACU05108.1| prolyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
          Length = 490

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/433 (18%), Positives = 163/433 (37%), Gaps = 86/433 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + + A++ ++   TG      P       +  E+   + +  E   +
Sbjct: 33  GCMVIKPYGYSIWEKMQAVLDQKFKDTGHSNAYFPLFIPKSFFSKEASHVEGFATECAVV 92

Query: 97  AD-----------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                              + ++ +I  PT E ++ + ++  I+SYR+LP    Q     
Sbjct: 93  THYRLKNDGNGNIIVDETAKLEEELIVRPTSETIIWNTYKGWIQSYRDLPILVNQWANVV 152

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E+R R  + R+ EFL ++ ++   T + +     KM   Y                  
Sbjct: 153 RWEMRTRLFL-RTTEFLWQEGHTAHATADEAVEETRKMLDVY------------------ 193

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                         AD  E             +P        +  + +  E++       
Sbjct: 194 --------------ADFAEQ---------WMAVPV-------VKGVKTPNERFAG----- 218

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  L     E      + ++ G   + G  ++      F   +GK  +V   S+G+
Sbjct: 219 ------ALDTYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFTNKEGKIEHVWASSWGV 272

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSKVG 376
            + R++ A+I +  D  G++ P  +AP ++ ++ I  H++  ++     +++ A+L ++G
Sbjct: 273 -STRLMGALIMAHSDDAGLVLPPKLAPIQVVIVPIYKHEEELKNITGFVDELIAKLKRMG 331

Query: 377 CDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM---SLE 432
             V +DD   ++ G +FA  +L G P+++ +G + + +  VE+  R T  ++ +    LE
Sbjct: 332 ISVKYDDRDTQRPGFKFAEYELKGVPVRLAIGGRDMENGTVELARRDTREKQTVLQDGLE 391

Query: 433 EVINYASHRFSNN 445
             I         N
Sbjct: 392 IFIAQLLEEIQEN 404


>gi|167947531|ref|ZP_02534605.1| prolyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 110

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 58/110 (52%), Positives = 80/110 (72%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S++ L  ++E P DAE ASHKLMLR GMI + + G+Y+WLPLG + L  V AI+REE
Sbjct: 1   MRTSEFPLQTVKETPADAETASHKLMLRAGMIRKLAAGLYTWLPLGLRVLRKVEAIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
            +R GA+E+ +P +Q A+LW ESGR++ YG E+LRL DR+ +   +GP H
Sbjct: 61  MDRAGALELLMPAVQPAELWQESGRWEQYGPELLRLKDRHQREFCFGPNH 110


>gi|161763540|ref|YP_081979.2| prolyl-tRNA synthetase [Bacillus cereus E33L]
 gi|114152167|sp|Q63GI2|SYP2_BACCZ RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
          Length = 476

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F    GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRTGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 GDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 386


>gi|218895513|ref|YP_002443924.1| prolyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228899114|ref|ZP_04063386.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 4222]
 gi|218542506|gb|ACK94900.1| prolyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228860555|gb|EEN04943.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 4222]
          Length = 476

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 386


>gi|255731874|ref|XP_002550861.1| hypothetical protein CTRG_05159 [Candida tropicalis MYA-3404]
 gi|240131870|gb|EER31429.1| hypothetical protein CTRG_05159 [Candida tropicalis MYA-3404]
          Length = 684

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 141/424 (33%), Gaps = 75/424 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
            G Y   P      + +         + G      P   S   L  E    + +  E+  
Sbjct: 211 SGCYILRPNSYFVWETIQDYFNVRIKKLGVQNAYFPMFVSQRVLEKEKDHIEGFAPEVAW 270

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D+ +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 271 VTRAGSSELDEHIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLR 330

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT + +     ++   Y  ++                          
Sbjct: 331 TREFLWQEGHTAHLTQDAAAEEVLQILDYYAGVYE------------------------- 365

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      +    +  E++    Y  T +         
Sbjct: 366 -----------------------ELLAVPVVKGKKTENEKFAGGDYTTTVEGFIAA---- 398

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIG-AMRVVAAV 328
                  + RGI+ G   + GT +S   + + +  +G +           G + RV+  +
Sbjct: 399 -------TGRGIQGGTSHHLGTNFSKMFNLSVESPEGPEKPRIFAYQNSWGLSTRVIGVM 451

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFW 381
           I +  D KG++ P  +A ++  +I +        A  +   +  +KI   L   G     
Sbjct: 452 IMTHSDNKGLVLPPRIAQYQAVVIPVGLTSKSSDAQRKDINEGAQKIEKTLQDAGIRATG 511

Query: 382 DDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D       G +FA  +L G PL++  G K ++ ++V +  R  G +  + L+E+      
Sbjct: 512 DYREIYNPGWKFADWELKGVPLRLEFGPKDLAGNQVTVVRRNDGKKYTVKLDELQTEIPK 571

Query: 441 RFSN 444
              +
Sbjct: 572 ILDD 575


>gi|238882425|gb|EEQ46063.1| threonyl-tRNA synthetase [Candida albicans WO-1]
          Length = 706

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/452 (16%), Positives = 151/452 (33%), Gaps = 46/452 (10%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++   + +   RD      +  L   + ++ S G   WLP G +  + +   +R E  
Sbjct: 287 MTEHLKFLAEAAERDHRKIGREQELF--IFNEMSPGSAMWLPHGARIYNTLVDTLRTEYR 344

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + S  LW  SG + +Y + M       +      P +      +F+S  
Sbjct: 345 KRGYEEVITPNMYSTKLWETSGHWQNYKENMFSFEVEKET-FGLKPMNCPGHCILFKSRE 403

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP+      +  R+E      G+ R R F   DA+ F  T +        +F   
Sbjct: 404 RSYRELPWRVADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCTTDQIGTE-IAGVFDFL 462

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                               + G    EF +   T   +     D  +          +D
Sbjct: 463 K------------------KMYGIFGFEFKMELSTRPEKYVGDLDTWNSAEKKLEQALND 504

Query: 242 IISLNSI--VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +            A Y    D+    + D+L    + +   ++    F    ++ L   
Sbjct: 505 FLGEGKWELNPGDGAFYGPKIDIM---ISDALKRWFQCATIQLD----FQLPQRFELEYK 557

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                       V +    +G++  + A++    +     WP  ++P +I ++ +     
Sbjct: 558 ---SDKGPNTRPVMIHRAILGSVERMTAILT---EHYKGKWPFWLSPRQILIVPVGPK-- 609

Query: 360 VCRDACEKIYARLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              D  +K+  +L+         D  G  +  +     +  +    IVG +  +   V +
Sbjct: 610 -YYDYAQKLQKKLNDDYFFYCDVDVSGNTLPKKIRTGQMYKYNFIFIVGEEEENSESVNV 668

Query: 419 KHRL----TGIREDMSLEEVINYASHRFSNNR 446
           ++R      G    +  ++V+        + R
Sbjct: 669 RNRDIPEEQGKNAMVGFDDVVKQLVALRESKR 700


>gi|228963504|ref|ZP_04124661.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228796198|gb|EEM43649.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 476

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWI 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 386


>gi|256274272|gb|EEU09179.1| Mst1p [Saccharomyces cerevisiae JAY291]
          Length = 429

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 137/447 (30%), Gaps = 78/447 (17%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSAD 78
           + S +  L   M    S G   +LP G K  + +   ++ +Q  + G  E+  P +    
Sbjct: 41  MVSQRQDLF--MTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKT 98

Query: 79  LWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           LW +SG +++Y  +M +    D   +     P +      IF    +SY  LP  F    
Sbjct: 99  LWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFS 158

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R+E      G+ R R+F   D  S   +                             
Sbjct: 159 PLHRNEASGALSGLTRLRKFHQDDGRSGAESN---------------------------- 190

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                         + +   T            +          ++      +     A 
Sbjct: 191 --------------YFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAF 236

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QM 314
           Y    D+    + D L +  +V+   ++    F    ++       FK  D        +
Sbjct: 237 YGPKLDIM---VTDHLRKTHQVATIQLD----FQLPERFD----LKFKDQDNSYKRPIMI 285

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                G++    A++    D     WP  + P++  +I +   +    D C  +  +L  
Sbjct: 286 HRATFGSIERFMALLI---DSNEGRWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRN 342

Query: 375 V--------------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                            +V  D   E +G +   A L  +   +IVG + V   K  I+ 
Sbjct: 343 EREADDMEPVPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRE 402

Query: 421 RLTGIR-EDMSLEEVINYASHRFSNNR 446
           R      E +++ ++         N +
Sbjct: 403 RDNRKSFEKLTMSQIWEKFIELEKNYK 429


>gi|324324493|gb|ADY19753.1| prolyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 476

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F    GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRTGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 386


>gi|228950947|ref|ZP_04113068.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228808674|gb|EEM55172.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 476

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKGTGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQEHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E + ++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVPMDQLEERIPALLEE 386


>gi|42779590|ref|NP_976837.1| prolyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|81411119|sp|Q73E50|SYP2_BACC1 RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|42735506|gb|AAS39445.1| prolyl-tRNA synthetase [Bacillus cereus ATCC 10987]
          Length = 476

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 79/412 (19%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ A R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGVSA-RMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQEHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +++E++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFIAMEQLEERIPALLEE 386


>gi|253680953|ref|ZP_04861756.1| proline--tRNA ligase [Clostridium botulinum D str. 1873]
 gi|253562802|gb|EES92248.1| proline--tRNA ligase [Clostridium botulinum D str. 1873]
          Length = 500

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 149/412 (36%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +  +   TG   + +P      L   E    + +  E+  +
Sbjct: 61  GCMIIRPYGYAIWENIQKYLDTKFKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 120

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D   + +   PT E +  D +   I+S+ +LP  + Q     R E   R   +R+
Sbjct: 121 TQGGNDTLAERLCVRPTSETLFCDHYAKIIQSHNDLPKKYNQWCSVVRWEKTTRP-FLRT 179

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S      M  +Y                               
Sbjct: 180 TEFLWQEGHTAHATAEESAQETIDMLNTY------------------------------- 208

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E  +                    I    +  E++    A  +            
Sbjct: 209 -ADFCENVLA----------------MPVIKGQKTEKEKFAGAKATYT-----------I 240

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FG  +S   +  +   + +  YV   S+G+   R++ A+I   
Sbjct: 241 ESLMHDGKALQSGTSHNFGDNFSKAFNIQYNDKNSQLQYVHQTSWGV-TTRLIGAIIMVH 299

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+  P  +AP ++ ++ I  H +   D  E++  ++SKV   V  D   +  G +F
Sbjct: 300 GDDSGLKLPPRIAPLQVVIVPIAQHKEGVLDKAEELRQQISKV-ARVKVDSSDKMPGWKF 358

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K + +++V +  R T  +  +S++E+         +
Sbjct: 359 NEYEMKGVPVRLEVGPKDIENNQVVLVRRDTREKIFVSMDELETKIPELLDD 410


>gi|229019013|ref|ZP_04175855.1| Prolyl-tRNA synthetase [Bacillus cereus AH1273]
 gi|228742341|gb|EEL92499.1| Prolyl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 445

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 256 YAATSDVHNEKLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            +  +D+   +  D  P+       ARGIEVGH+F  GT+YS  M+ATF   +GK   + 
Sbjct: 257 VSQYTDLRFIQEGDQSPDGNGTILFARGIEVGHVFKLGTRYSEAMNATFLDENGKTKPLI 316

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R VAA+ E  +D  G++WP +VAPF + +I +       R+  E IY  L 
Sbjct: 317 MGCYGIGVSRTVAAIAEQFNDENGLVWPKAVAPFHVHVIPVNMKSDAQREMGENIYNSLQ 376

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G +V  DD  E+ G +FA ADL G P++V VG K   +  VE+K R TG  E++ +EE
Sbjct: 377 EQGYEVLLDDRAERAGVKFADADLFGLPVRVTVGKK-ADEGIVEVKVRATGESEEVKVEE 435

Query: 434 VINYASHRFS 443
           +  Y ++   
Sbjct: 436 LQTYIANILK 445



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 58/146 (39%), Positives = 82/146 (56%), Gaps = 1/146 (0%)

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +KSY+ LP T YQIQ KFRDE RPRFG++R REFLMKDAYSF  T E     Y++++ +Y
Sbjct: 1   MKSYKKLPLTLYQIQTKFRDEQRPRFGLLRGREFLMKDAYSFHATQESLDEVYDRLYKAY 60

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             IF R GL    + A+SG +GG  +HEF+VL++ GE  +  S    ++    E      
Sbjct: 61  SNIFARCGLNFRAVIADSGAMGGKDTHEFMVLSEVGEDTIAYSDT-SNYAANIEMAPVVA 119

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKL 267
             + +   E+     A       E++
Sbjct: 120 TYTKSDEAEKALEKVATPDQKAIEEV 145


>gi|296435914|gb|ADH18088.1| prolyl-tRNA synthetase [Chlamydia trachomatis G/9768]
 gi|296437774|gb|ADH19935.1| prolyl-tRNA synthetase [Chlamydia trachomatis G/11074]
 gi|297140274|gb|ADH97032.1| prolyl-tRNA synthetase [Chlamydia trachomatis G/9301]
          Length = 581

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 98/277 (35%), Positives = 155/277 (55%), Gaps = 3/277 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E  +  L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  + C        + +    
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTI-CVSGSYGANVEAAQAI 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
               +  ++++            + N ++F + P++K
Sbjct: 240 PPSYVYDSNLLPVEEVATPNIRTIENLEVFFNTPKHK 276



 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 5/203 (2%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV---SARGIEVGHIFYFGTKYSLPMS 299
           +    +      P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S
Sbjct: 367 VHCKHVNWGRDIPLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFS 426

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             F+  +G      MG+YGIG  R +AA IE   D KG++WP +VAPF I+++     D 
Sbjct: 427 VGFQDKNGDKQLCWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVAPFSITILY-NGGDT 485

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  ++Y  L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+
Sbjct: 486 EGEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIE 545

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            R +G + ++S E ++++ S   
Sbjct: 546 SR-SGEKCNVSPENLLDWCSKNL 567


>gi|326203342|ref|ZP_08193207.1| prolyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325986600|gb|EGD47431.1| prolyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 478

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 152/417 (36%), Gaps = 67/417 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMVIKPYGYAIWENLQKALDTRFKATGHENVYMPMFIPESLLLKEKEHVEGFAPEVAWV 98

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + + + I+SYR+LP  + Q     R E   R   +R+
Sbjct: 99  THGGDEKLTERLCVRPTSETLFCEHYSNSIQSYRDLPKLYNQWCSVVRWEKTTRP-FLRT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    KM   Y                               
Sbjct: 158 LEFLWQEGHTAHATAEEAQEETIKMLNVY------------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E  +                    I    +  E++   +A  +            
Sbjct: 187 -ADVLENVLAI----------------PVIKGRKTDKEKFAGAHATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FG  ++      +   + +  YV   S+G+   R++ A+I   
Sbjct: 219 ESLMHDGKALQSGTSHNFGDGFAKAFDIQYTDKNNQLQYVHQTSWGV-TTRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P +VAP ++ +I +  H +   +   ++  RLS     V  DD  +  G +F
Sbjct: 278 GDDSGLVLPPAVAPTQLIIIPVSQHKEGVLEKANELKDRLSAK-FRVKMDDSDKMPGWKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  ++ G P+++ +G K +  ++  +  R    +  +SL+ +     +  ++ +  L
Sbjct: 337 SEYEMKGVPMRLEIGPKDIEKNQAVLVRRDNREKIFVSLDNLEETVENTLADIQNSL 393


>gi|260681819|ref|YP_003213104.1| prolyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260685416|ref|YP_003216549.1| prolyl-tRNA synthetase [Clostridium difficile R20291]
 gi|260207982|emb|CBA60134.1| putative dual-specificity prolyl/cysteinyl-tRNA synthetase
           [Clostridium difficile CD196]
 gi|260211432|emb|CBE01531.1| putative dual-specificity prolyl/cysteinyl-tRNA synthetase
           [Clostridium difficile R20291]
          Length = 510

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/406 (17%), Positives = 144/406 (35%), Gaps = 67/406 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD---- 98
           P G    + +   + ++   TG      P L    L   E+   + +  E+  +      
Sbjct: 75  PYGYALWEKMQEFMDKKFKETGHKNCYFPLLIPESLLNKEAEHVEGFAPEVAWVTHGGNK 134

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           + ++ +   PT E ++  ++   +KSYR LP+ + Q     R E   R  + R+ EFL +
Sbjct: 135 KLEERLCVRPTSETIICTMYAKWLKSYRELPYLYNQWCSVVRWEKSTRPFL-RTSEFLWQ 193

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T E ++    +    Y                                     
Sbjct: 194 EGHTLHETAEEAQEETIQQLEVYK------------------------------------ 217

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                        +  E      +    S  E++       +            E     
Sbjct: 218 ------------ALCEELLAMPVVAGQKSESEKFAGGERTYT-----------IEAMMHD 254

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++     TF   +G        S+G  + R++  +I +  D +G+
Sbjct: 255 GKALQSGTSHFLGQHFTKAFDITFADREGNLANPYHTSWGA-STRLIGGLIMTHSDNRGL 313

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADL 397
           + P  VAP ++ ++ I A      +  +KIYA L   G  V  DD      G +F   ++
Sbjct: 314 VLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLKTKGVAVEVDDRDNYTTGWKFNEWEM 373

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G P++V +G K + +++  +  R T  ++ M LE + +     F 
Sbjct: 374 KGAPVRVEIGPKDIENNQAMVFRRDTLEKDSMPLEGLADAICDLFD 419


>gi|237802818|ref|YP_002888012.1| prolyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804740|ref|YP_002888894.1| prolyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273040|emb|CAX09953.1| prolyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274052|emb|CAX10846.1| prolyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
          Length = 581

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 163/308 (52%), Gaps = 8/308 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E  +  L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  + C        + +    
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTI-CVSGSYGANVEAAQAI 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR-----VSARGIEVGHIFYFGTK 293
               +  ++++            + + ++F + P++K      V  R  +    F    +
Sbjct: 240 PPSYVYDSNLLPVEEVATPNIRTIEDLEVFFNTPKHKILKTLVVKTRQKDSEKFFAICIR 299

Query: 294 YSLPMSAT 301
               ++ T
Sbjct: 300 GDRQINLT 307



 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 101/203 (49%), Gaps = 5/203 (2%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV---SARGIEVGHIFYFGTKYSLPMS 299
           +    +      P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S
Sbjct: 367 VHCKHVNWGRDIPLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFS 426

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             F+  +G      MG+YGIG  R +AA IE   D KG++WP +V PF I+++     D 
Sbjct: 427 VGFQDKNGDKQLCWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVTPFSITILY-NGGDT 485

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  ++Y  L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+
Sbjct: 486 EGEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIE 545

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            R +G + ++S E ++++ S   
Sbjct: 546 SR-SGEKCNVSPENLLDWCSKNL 567


>gi|166154604|ref|YP_001654722.1| prolyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|166155479|ref|YP_001653734.1| prolyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335871|ref|ZP_07224115.1| prolyl-tRNA synthetase [Chlamydia trachomatis L2tet1]
 gi|226699129|sp|B0B7W3|SYP_CHLT2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|226699130|sp|B0BC28|SYP_CHLTB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|165930592|emb|CAP04089.1| prolyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|165931467|emb|CAP07043.1| prolyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 581

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 163/308 (52%), Gaps = 8/308 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E  +  L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  + C        + +    
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTI-CVSGSYGANVEAAQAI 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR-----VSARGIEVGHIFYFGTK 293
               +  ++++            + + ++F + P++K      V  R  +    F    +
Sbjct: 240 PPSYVYDSNLLPVEEVATPNIRTIEDLEVFFNTPKHKILKTLVVKTRQKDSEKFFAICIR 299

Query: 294 YSLPMSAT 301
               ++ T
Sbjct: 300 GDRQINLT 307



 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 5/203 (2%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV---SARGIEVGHIFYFGTKYSLPMS 299
           +    +      P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S
Sbjct: 367 VHCKHVNWGRDIPLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFS 426

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             F+  +G      MG+YGIG  R +AA IE   D KG++WP +VAPF I+++     D 
Sbjct: 427 VGFQDKNGDKQLCWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVAPFSITILY-NGGDT 485

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  ++Y  L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+
Sbjct: 486 EGEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIE 545

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            R +G + ++S E ++++ S   
Sbjct: 546 SR-SGEKCNVSPENLLDWCSKNL 567


>gi|124010058|ref|ZP_01694720.1| threonyl-tRNA synthetase [Microscilla marina ATCC 23134]
 gi|123983945|gb|EAY24340.1| threonyl-tRNA synthetase [Microscilla marina ATCC 23134]
          Length = 578

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 131/373 (35%), Gaps = 38/373 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD      +L L T    +  KG+  WLP G    + +   +R  Q + G   +
Sbjct: 239 LEEAKKRDHRKLGKELELFT-FSERVGKGLPLWLPKGALLRERLENFMRRAQIKAGYSPV 297

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
             P + S  L+  SG ++ YG++  +     +  +  +  P +     +I+ S  +SY++
Sbjct: 298 VTPHIGSKKLYETSGHWEKYGEDSFQPIATPQEGEEFMLKPMNCPHHCEIYASKPRSYKD 357

Query: 128 LPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           LP    +    +R E      G+ R R F   DA+ F  TP   K  + K+    L +F 
Sbjct: 358 LPLRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFC-TPAQVKEEFGKVIDLVLYVFS 416

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
            LG +    +                  D      +  KD           D      L 
Sbjct: 417 ALGFEDYTAQISLR--------------DPENKSKYFGKDEDWEQAEQAIIDVAAQKGLQ 462

Query: 247 SIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           ++ E    A Y    D     + D+L    ++    ++         ++       + G+
Sbjct: 463 TVTELGEAAFYGPKLDFM---VKDALKRKWQLGTVQLDY----QLPDRF----ELEYTGS 511

Query: 306 DGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           D + H    +     G++    AV+     GK  +W           I I    Q   D 
Sbjct: 512 DNERHRPVMIHRAPFGSLERFIAVLTEHCAGKFPLW------LAPEQIAILPISQKFHDY 565

Query: 365 CEKIYARLSKVGC 377
            +++YA+L +   
Sbjct: 566 AQEVYAQLEENDI 578


>gi|288927557|ref|ZP_06421404.1| proline--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330391|gb|EFC68975.1| proline--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 493

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 164/444 (36%), Gaps = 85/444 (19%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L+++  +  Q +  G     P G    + +   +      TGA     P L     +  E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQQQLDRMFKETGAQNAYFPLLIPKSFFSRE 81

Query: 83  SGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIKS 124
           +     + KE   +                    + D+ +I  PT E ++ + +++ I S
Sbjct: 82  AEHVKGFAKECAVVTHYRLRASEDGNSVEVDPSAKLDEELIIRPTSETIIWNTYKNWIHS 141

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+LP    Q     R E+R R  + R+ EFL ++ ++   T E ++    KM   Y + 
Sbjct: 142 WRDLPLMCNQWCNVMRWEMRTRPFL-RTSEFLWQEGHTAHATREEAEEEAKKMLDVYAKF 200

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                                                          +P           
Sbjct: 201 AQD-----------------------------------------WMAVP----------- 208

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +   V+  T  +A   D +         E      + ++ G   + G  ++     TF  
Sbjct: 209 VVCGVKSETERFAGALDTYT-------IEAMMQDGKALQSGTSHFLGQNFAKSFDVTFLN 261

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ +I I    Q  +  
Sbjct: 262 KENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPKLAPIQVVVIPIGKAGQQMQAI 320

Query: 365 CEKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +K+     +L K G  V +DD    + G ++A  +L G P+++++G + + ++ VEI  
Sbjct: 321 ADKLQPVIEQLRKAGVTVKYDDSDNRRPGFKYADYELKGIPVRIVMGGRDLENNTVEIMR 380

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R T  +E +  E +  +      +
Sbjct: 381 RDTLEKETIGFEGLAEHIVSVLDD 404


>gi|229829763|ref|ZP_04455832.1| hypothetical protein GCWU000342_01860 [Shuttleworthia satelles DSM
           14600]
 gi|229791752|gb|EEP27866.1| hypothetical protein GCWU000342_01860 [Shuttleworthia satelles DSM
           14600]
          Length = 479

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 149/415 (35%), Gaps = 66/415 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   + PLG    +N+   +      TG   + +P L    L   E+   + +  E+  +
Sbjct: 39  GFMIYKPLGYAIWENIQKNMDAMFKETGVENVYMPLLMPESLLKKEAEHVEGFAPEVAWV 98

Query: 97  ADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E +  D++ + ++SYR+LP  + Q     R E   R   +RS
Sbjct: 99  TQGGIQPLQERLAIRPTSETLFCDLYSTIVQSYRDLPKVYNQWCSVVRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M   Y     +                         
Sbjct: 158 SEFLWQEGHTAHATAEEAEARTIQMLNVYADFCEKY------------------------ 193

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        I    +  E++    A  +            
Sbjct: 194 ------------------------LAIPVIKGRKTDKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG  ++      +   + +  YV   S+G+ + R++ A+I   
Sbjct: 219 ETLMHDGKALQSGTSHNFGDGFARAYGIQYTDKNNQLRYVHQTSWGV-STRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP +I ++ +    +   +  E++  +L K G  V  DD  +  G +F
Sbjct: 278 GDDSGLVLPPRIAPVQIVIVPVMQQKEGVLEKAEELRQQLQKAGFSVKLDDSEKSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           A A++ G PL++ VG K +   +V +  R    +  + + E+   A       + 
Sbjct: 338 AEAEMRGIPLRIEVGPKDIEKEQVVMVRRDNRKKVFVPMRELTERAEQLLEQEQE 392


>gi|76789124|ref|YP_328210.1| prolyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|114152182|sp|Q3KLW0|SYP_CHLTA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|76167654|gb|AAX50662.1| prolyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
          Length = 581

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 163/308 (52%), Gaps = 8/308 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E  +  L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  + C        + +    
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTI-CVSGSYGANVEAAQAI 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR-----VSARGIEVGHIFYFGTK 293
               +  ++++            + + ++F + P++K      V  R  +    F    +
Sbjct: 240 PPSYVYDSNLLPVEEVATPNIRTIEDLEVFFNTPKHKILKTLVVKTRQKDSEKFFAICIR 299

Query: 294 YSLPMSAT 301
               ++ T
Sbjct: 300 GDRQINLT 307



 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 101/203 (49%), Gaps = 5/203 (2%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV---SARGIEVGHIFYFGTKYSLPMS 299
           +    +      P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S
Sbjct: 367 VHCKHMNWGRDIPLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFS 426

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             F+  +G      MG+YGIG  R +AA IE   D KG++WP +V PF I+++     D 
Sbjct: 427 VGFQDKNGDKQLCWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVTPFSITILY-NGGDT 485

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  ++Y  L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+
Sbjct: 486 EGEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIE 545

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            R +G + ++S E ++++ S   
Sbjct: 546 SR-SGEKCNVSPENLLDWCSKNL 567


>gi|153953239|ref|YP_001394004.1| prolyl-tRNA synthetase [Clostridium kluyveri DSM 555]
 gi|146346120|gb|EDK32656.1| ProS [Clostridium kluyveri DSM 555]
          Length = 476

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 72/412 (17%), Positives = 151/412 (36%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P      +++   +      TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMIIRPYAYAMWEHIQGYLDRRFKETGHENVYMPLFIPESLLEKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               ++ +       PT E +  + +   ++SY++LP  + Q     R E   R  + R+
Sbjct: 97  TQGGNEELTEKLCVRPTSETLFCEHYAKIVQSYKDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M   Y                               
Sbjct: 156 TEFLWQEGHTIHATKEEAEEETIRMLNIYEE----------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                     C +      +  + T+ +             A Y   S +H+        
Sbjct: 187 ---------LCREMLAIPVLKGQKTESEKFA-------GGEATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G   YFG  ++ P    +   +GK  YV   S+GI   R++ A+I   
Sbjct: 223 ------GKALQSGTSHYFGQNFAKPFEMQYLDKNGKLQYVYQTSWGI-TTRIIGALIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ ++ I  H +   +  +++   LSK+   V  DD  +  G +F
Sbjct: 276 GDDNGLVVPPRIAPLQVIIVPIAQHKEGVLEKADELKEELSKI-VRVKIDDSDKMPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  ++ G P+++ VG K ++ ++V +  R T  +  + +  + +       N
Sbjct: 335 SEHEMKGVPIRLEVGPKDIAKNQVVLVRRDTREKIMVPMSNLCDEVPALLDN 386


>gi|238484021|ref|XP_002373249.1| threonyl-tRNA synthetase [Aspergillus flavus NRRL3357]
 gi|220701299|gb|EED57637.1| threonyl-tRNA synthetase [Aspergillus flavus NRRL3357]
          Length = 526

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 144/442 (32%), Gaps = 65/442 (14%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
             P D         L T  I  +S G   +LP G   ++ + + +R +  + G  E+  P
Sbjct: 57  ATPADYRALGTAQDLFTTSI--YSPGSPLFLPNGTHVINKLVSFLRTQYLQYGFREVLTP 114

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADR-----------NDKAMIYGPTHEEVMTDIFRSH 121
           T+    LW  SG + +Y  +M  +  R            D++    P +      +F+S 
Sbjct: 115 TIYKRSLWEVSGHWQNYKDDMYEVRGRGAMGETEGEAGEDESYGLKPMNCPGHCLLFKSQ 174

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR LP  +       R+E+     G+ R R F   D + F    +            
Sbjct: 175 NHSYRELPIRYADFSPLHRNEVSGSLSGLTRVRRFHQDDGHIFCRPQQIKSE-IASALGF 233

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +    GL    +   + P                E     S +  D          D
Sbjct: 234 VDMVMTTFGLGPYRLVLSTRP----------------EKDFIGSLELWDSAESQLREALD 277

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPM 298
           +     ++ E   A Y    D+   +L D   +  ++S   +++     F    + +   
Sbjct: 278 NSGREWALNEGDGAFYGPKIDI---QLQDQAGKYHQLSTIQLDMNLPQRFGLEYQVAEGE 334

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                   G+   V +     G++    A++    +     WP  ++P +  ++ +   D
Sbjct: 335 EDYNPATPGRARPVLVHRANFGSIERFLALLI---EQYAGRWPFWLSPRQGIVLTVN-QD 390

Query: 359 QVCRDACEKIYARLSKVGCDVF-----------------------WDDMGEQIGSQFAVA 395
           +       +  A++S  G                            DD  + +G +   A
Sbjct: 391 EKVLQQAHEAAAKIS--GFRALEPGQSGNNAPQPLSFVDSTFLIDVDDSPQTLGKKIQRA 448

Query: 396 DLLGFPLQVIVGSKFVSDSKVE 417
             + +    IVG K V++S+V 
Sbjct: 449 KQMKYNFIFIVGPKDVAESRVT 470


>gi|196034766|ref|ZP_03102174.1| prolyl-tRNA synthetase [Bacillus cereus W]
 gi|195992809|gb|EDX56769.1| prolyl-tRNA synthetase [Bacillus cereus W]
          Length = 476

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F    GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRTGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKAIELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLGERIPALLEE 386


>gi|169767186|ref|XP_001818064.1| threonyl-tRNA synthetase [Aspergillus oryzae RIB40]
 gi|83765919|dbj|BAE56062.1| unnamed protein product [Aspergillus oryzae]
          Length = 526

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 144/442 (32%), Gaps = 65/442 (14%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
             P D         L T  I  +S G   +LP G   ++ + + +R +  + G  E+  P
Sbjct: 57  ATPADYRALGTAQDLFTTSI--YSPGSPLFLPNGTHVINKLVSFLRTQYLQYGFREVLTP 114

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADR-----------NDKAMIYGPTHEEVMTDIFRSH 121
           T+    LW  SG + +Y  +M  +  R            D++    P +      +F+S 
Sbjct: 115 TIYKRSLWEVSGHWQNYKDDMYEVRGRGAMGETEGEAGEDESYGLKPMNCPGHCLLFKSQ 174

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR LP  +       R+E+     G+ R R F   D + F    +            
Sbjct: 175 NHSYRELPIRYADFSPLHRNEVSGSLSGLTRVRRFHQDDGHIFCRPQQIKSE-IASALGF 233

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +    GL    +   + P                E     S +  D          D
Sbjct: 234 VDMVMTTFGLGPYRLVLSTRP----------------EKDFIGSLELWDSAESQLREALD 277

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPM 298
           +     ++ E   A Y    D+   +L D   +  ++S   +++     F    + +   
Sbjct: 278 NSGREWALNEGDGAFYGPKIDI---QLQDQAGKYHQLSTIQLDMNLPQRFGLEYQVAEGE 334

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                   G+   V +     G++    A++    +     WP  ++P +  ++ +   D
Sbjct: 335 EDYNPATPGRARPVLVHRANFGSIERFLALLI---EQYAGRWPFWLSPRQGIVLTVN-QD 390

Query: 359 QVCRDACEKIYARLSKVGCDVF-----------------------WDDMGEQIGSQFAVA 395
           +       +  A++S  G                            DD  + +G +   A
Sbjct: 391 EKVLQQAHEAAAKIS--GFRALEPGQSGNNAPQPLSFVDSTFLIDVDDSPQTLGKKIQRA 448

Query: 396 DLLGFPLQVIVGSKFVSDSKVE 417
             + +    IVG K V++S+V 
Sbjct: 449 KQMKYNFIFIVGPKDVAESRVT 470


>gi|325090828|gb|EGC44138.1| threonyl-tRNA synthetase [Ajellomyces capsulatus H88]
          Length = 578

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 81/456 (17%), Positives = 157/456 (34%), Gaps = 62/456 (13%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           P D  +   +  L      Q+S G   +LP G   L+ + + +R +  + G +E+  P++
Sbjct: 88  PADHRVVGTEQELFVT--SQYSPGSPLFLPNGTHILNKLTSFLRAQYTKYGFLEVLTPSI 145

Query: 75  QSADLWVESGRYDSYGKEMLRLADRN-------------DKAMIYGPTHEEVMTDIFRSH 121
               LW  SG + +Y  +M  +  RN             D++    P +      +F+S 
Sbjct: 146 YKKSLWKVSGHWQNYKDDMYEVRGRNATGEQTAETQIGEDESYGLKPMNCPGHCLLFKSQ 205

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR LP  +       R+E+     G+ R R F   D + F    +            
Sbjct: 206 NHSYRELPLRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIFCRPQQIGSE-IESALKF 264

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +    G ++  +   + P                E     S +  D          +
Sbjct: 265 TDTVMRTFGFENYRLVLSTRP----------------EKDFIGSVELWDSAERQLRDALE 308

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  +     A Y    D+   ++ DS  +  ++S   +++     F  +Y++P   
Sbjct: 309 KSGRSWELNHGDGAFYGPKIDM---QIQDSDGKFHQLSTIQLDMNLPQRFELEYTVPEGE 365

Query: 301 TFKGA--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                   GK   V +     G++    A++  +++G+   W        +++   +   
Sbjct: 366 EDYNPETPGKAVPVLIHRAIFGSLERFFALLIENYNGRWPFWLSPRQGIILTVSQDEKLL 425

Query: 359 QVCRDACEKI--YAR-LSKVG------------------CDVFWDDMGEQIGSQFAVADL 397
           Q   DA  K+  Y R LS  G                    +  D     +G +   A  
Sbjct: 426 QAADDAAAKMSGYRRVLSSSGDANSTTGPPKPLSPARTTFRIDLDTSARSLGKKIREAKK 485

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + + L  ++G K + D  V++     G +  M+LE+
Sbjct: 486 MKYNLIFVLGEKNLVDGSVDV---DLGGQMMMALEK 518


>gi|296436840|gb|ADH19010.1| prolyl-tRNA synthetase [Chlamydia trachomatis G/11222]
          Length = 581

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 137/223 (61%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E  +  L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTI 223



 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 5/203 (2%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV---SARGIEVGHIFYFGTKYSLPMS 299
           +    +      P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S
Sbjct: 367 VHCKHVNWGRDIPLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFS 426

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             F+  +G      MG+YGIG  R +AA IE   D KG++WP +VAPF I+++     D 
Sbjct: 427 VGFQDKNGDKQLCWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVAPFSITILY-NGGDT 485

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  ++Y  L+  G +   +D  E++G +   +DLLG P ++I+G  F S   +EI+
Sbjct: 486 EGEATALQLYQSLNTEGFEPLLNDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIE 545

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            R +G + ++S E ++++ S   
Sbjct: 546 SR-SGEKCNVSPENLLDWCSKNL 567


>gi|219853874|ref|YP_002470996.1| hypothetical protein CKR_0531 [Clostridium kluyveri NBRC 12016]
 gi|219567598|dbj|BAH05582.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 481

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 72/412 (17%), Positives = 151/412 (36%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P      +++   +      TG   + +P      L   E    + +  E+  +
Sbjct: 42  GCMIIRPYAYAMWEHIQGYLDRRFKETGHENVYMPLFIPESLLEKEKDHVEGFAPEVAWV 101

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               ++ +       PT E +  + +   ++SY++LP  + Q     R E   R  + R+
Sbjct: 102 TQGGNEELTEKLCVRPTSETLFCEHYAKIVQSYKDLPKLYNQWCSVVRWEKTTRPFL-RT 160

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M   Y                               
Sbjct: 161 TEFLWQEGHTIHATKEEAEEETIRMLNIYEE----------------------------- 191

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                     C +      +  + T+ +             A Y   S +H+        
Sbjct: 192 ---------LCREMLAIPVLKGQKTESEKFA-------GGEATYTIESLMHD-------- 227

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G   YFG  ++ P    +   +GK  YV   S+GI   R++ A+I   
Sbjct: 228 ------GKALQSGTSHYFGQNFAKPFEMQYLDKNGKLQYVYQTSWGI-TTRIIGALIMVH 280

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ ++ I  H +   +  +++   LSK+   V  DD  +  G +F
Sbjct: 281 GDDNGLVVPPRIAPLQVIIVPIAQHKEGVLEKADELKEELSKI-VRVKIDDSDKMPGWKF 339

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  ++ G P+++ VG K ++ ++V +  R T  +  + +  + +       N
Sbjct: 340 SEHEMKGVPIRLEVGPKDIAKNQVVLVRRDTREKIMVPMSNLCDEVPALLDN 391


>gi|310789927|gb|EFQ25460.1| threonyl-tRNA synthetase [Glomerella graminicola M1.001]
          Length = 526

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/496 (15%), Positives = 148/496 (29%), Gaps = 110/496 (22%)

Query: 16  RDAEIASHKLMLRTGMIHQH-------SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            + ++  H+ +     I Q        S G   +LP G +  + +   +R +    G  E
Sbjct: 47  AEHDLPDHRKLG----IRQELFTTSVYSPGSPIFLPNGTRVFNRLVDFLRRQYVHYGFEE 102

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADR----------------------------- 99
           +  P +    LW  SG   +Y  +M  +  R                             
Sbjct: 103 VITPNIYKKSLWERSGHLQNYADDMYTVTSRARAPEEKAAGCCGADGRSPPHEGSGETAR 162

Query: 100 ----NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSRE 154
                D      P +      IF S  +SYR+LP  F       R+E+     G+ R R 
Sbjct: 163 TAEGEDDDYGLKPMNCPGHCLIFASKTRSYRDLPIRFADFSPLHRNEISGALSGLTRVRR 222

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   D + F    +  +  +         ++  LGL        + P             
Sbjct: 223 FHQDDGHIFCRPIQIREEVFK-TLDFMKTVYGALGLDYFDFALSTRPADH---------- 271

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                    +    +          +      ++ E   A Y    DV    L DS  ++
Sbjct: 272 ------YIGTDAEWERAEGQLRDALEQAGLKYTVKEGDGAFYGPKIDVM---LHDSHGKS 322

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSA-----------------TFKGADGKDHYVQMGSY 317
            +     ++    F    +++L   A                       G    V +   
Sbjct: 323 HQAGTIQLD----FQLPQRFNLEYKAPAPKLEAQGLPLEKADPAELETYGSVTPVMVHRA 378

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV-- 375
            +G++  + A++    +     WP  + P +  ++ +   + V R    +I   L+    
Sbjct: 379 ILGSVERLMALLI---EEYKGKWPFWLNPRQCVILTLNDTEPVVR-WASEIKDTLTGHDR 434

Query: 376 -------------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK--H 420
                        G  V  D     +  + A A   G+ L  +VG K V +  V ++   
Sbjct: 435 VRDPNKPVQPRPTGFAVDIDVSPRSLQKKLAEAIEKGYGLIAVVGKKNVENQTVTVQTGE 494

Query: 421 R--LTGIREDMSLEEV 434
           R    G ++    E++
Sbjct: 495 RPSENGDKKK-PREDL 509


>gi|34763883|ref|ZP_00144787.1| Prolyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27886346|gb|EAA23617.1| Prolyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 411

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 71/186 (38%), Positives = 102/186 (54%), Gaps = 2/186 (1%)

Query: 259 TSDVHNEKLFDSLP-ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +D+   K+ ++     K  SARGIE G IF  G KYS  M+AT+   +GK  Y+ MG Y
Sbjct: 225 VADIRTAKVGENCIIGGKLHSARGIECGQIFKLGDKYSKAMNATYLDENGKTQYMLMGCY 284

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R +AA IE ++D  GIIWP S+AP+ + +I     ++V     EKIY  L +   
Sbjct: 285 GIGVTRTMAAAIEQNNDENGIIWPVSIAPYTVDVIPANIKNEVQVSLAEKIYNELEEEKI 344

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD  E+ G +F  ADL+GFP +++VG +   +  VE+K R TG   ++   E+I  
Sbjct: 345 DAMLDDRDEKPGFKFKDADLIGFPFKIVVGKR-ADEGIVELKIRRTGETLELPQNEIIAK 403

Query: 438 ASHRFS 443
                 
Sbjct: 404 IKELMK 409



 Score = 48.2 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKDAYSF  + E     +  M  +Y RIF R GLK  P+ A+SG IGG  S EF VLA++
Sbjct: 1   MKDAYSFHTSQESLDEEFLNMRNAYSRIFTRCGLKFRPVDADSGNIGGSGSQEFQVLAES 60

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
           GE ++  S    ++    E    + I      +++
Sbjct: 61  GEDEIIYSD-GSEYAANIEKAVSELINPPKEELKE 94


>gi|167536887|ref|XP_001750114.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771443|gb|EDQ85110.1| predicted protein [Monosiga brevicollis MX1]
          Length = 550

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/422 (16%), Positives = 125/422 (29%), Gaps = 63/422 (14%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +  L     H  S G   +LP G +    +  +IRE+  + G  E+  
Sbjct: 189 EAAKRDHRKIGREQELF--FFHDLSPGSCFFLPRGARIYRTLMEMIREQYIKRGFSEVVT 246

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + + +LW  SG +  Y + +       +      P +      +F    +SYR LP  
Sbjct: 247 PNIFNKNLWETSGHWQHYQENIFSFEVEKEI-FAMKPMNCPSHCIMFGHRKRSYRELPLR 305

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
           F    +  R+EL     G+ R R F   DA+ F   PE  +            ++   G 
Sbjct: 306 FADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCE-PEQIEEEIKGCLDFLNEVYGIFG- 363

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                             EF +   T   +     +  +    +  +  +      SI  
Sbjct: 364 -----------------FEFELHLSTRPEKYLGEIEVWNRAESALESALNSCGHPWSINP 406

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    D+   K+ D+L    +V                             G+  
Sbjct: 407 GDGAFYGPKIDI---KVTDALRRQHQVRP-----------------------LCCSGERD 440

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                      +R+ A + E +            A                 +  +++ A
Sbjct: 441 LW------ASPLRMFAILCEHTGGKWPFWLSPRQAIVIPVAPQYN-------EYAKEVQA 487

Query: 371 RLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
                   +  DD     +  +   A +  +    +VG    +   V ++ R   +R  +
Sbjct: 488 FFHLKDYAIDIDDSTATQLQKKVRNACVAHYNFIFVVGDSEANHKTVNVRTRDGQLRGTL 547

Query: 430 SL 431
            L
Sbjct: 548 GL 549


>gi|255026350|ref|ZP_05298336.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J2-003]
          Length = 237

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 52  DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYG 111

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G +W   ++PF + LI +    +      E +Y  L   G  
Sbjct: 112 IGVSRILSAIAEQSNDENGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYTSLQDAGFS 171

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N  
Sbjct: 172 VLIDDRAERAGVKFADADLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTL 230


>gi|255017946|ref|ZP_05290072.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL F2-515]
          Length = 248

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 63  DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYG 122

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G +W   ++PF + LI +    +      E +Y  L   G  
Sbjct: 123 IGVSRILSAIAEQSNDENGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYTSLQDAGFS 182

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N  
Sbjct: 183 VLIDDRAERAGVKFADADLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTL 241


>gi|255311199|ref|ZP_05353769.1| prolyl-tRNA synthetase [Chlamydia trachomatis 6276]
 gi|255317500|ref|ZP_05358746.1| prolyl-tRNA synthetase [Chlamydia trachomatis 6276s]
          Length = 581

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 137/223 (61%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E  +  L DR +KAM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTI 223



 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 5/203 (2%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV---SARGIEVGHIFYFGTKYSLPMS 299
           +    +      P  A  D    +  D  P+N        +G+EV HIF  GT+Y+   S
Sbjct: 367 VHCKHVNWGRDIPLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFS 426

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             F+  +G      MG+YGIG  R +AA IE   D KG++WP +VAPF I+++     D 
Sbjct: 427 VGFQDKNGDKQLCWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVAPFSITILY-NGGDT 485

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  ++Y  L+  G +   DD  E++G +   +DLLG P ++I+G  F S   +EI+
Sbjct: 486 EGEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIE 545

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            R +G + ++S E ++++ S   
Sbjct: 546 SR-SGEKCNVSPENLLDWCSKNL 567


>gi|332799217|ref|YP_004460716.1| Prolyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
 gi|332696952|gb|AEE91409.1| Prolyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
          Length = 478

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/417 (17%), Positives = 144/417 (34%), Gaps = 69/417 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ +    TG      P      L   E+   + +  E+  +
Sbjct: 37  GCMVIRPYGYALWENIQQLLDDRFKATGHKNAYFPLFIPESLLQKEAEHVEGFAPEVAWV 96

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               ++ +       PT E ++ +++   IKS+R+LP    Q     R E       +R+
Sbjct: 97  THGGNEKLAERLAVRPTSETIICNMYSKWIKSWRDLPVLINQWCNVVRWEKS-TKPFLRT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M   Y                               
Sbjct: 156 AEFLWQEGHTAHRTKEDAEEEALRMLEVYRDFVET------------------------- 190

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                           D  +P        I    S  E++                    
Sbjct: 191 ----------------DLALPV-------IKGEKSDNEKFAG-----------ASKTYTI 216

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      R ++ G     G  ++     TF   DG+  YV   S+GI   R++ A++   
Sbjct: 217 EALMSDGRALQAGTSHNLGQHFAKAYDITFLDQDGQLKYVWQTSWGI-TTRLIGAIVMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGS 390
            D +G+  P ++AP +  ++ I     ++  +   +I+ +L      +  DD  E   G 
Sbjct: 276 GDDRGLKIPPTIAPIQAVIVPIFGRQTELVLNKTNEIFTKLKSE-VRIELDDRDEYTPGW 334

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +F   ++ G P+++ +G K +   +V +  R TG +  +S  E++          + 
Sbjct: 335 KFNEWEMRGVPVRIEIGPKDIQRQQVVLVRRDTGEKFTVSESELLPRLKTLLDEIQE 391


>gi|229100656|ref|ZP_04231504.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-29]
 gi|229119259|ref|ZP_04248564.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock1-3]
 gi|228664184|gb|EEL19720.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock1-3]
 gi|228682749|gb|EEL36779.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock3-29]
          Length = 476

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 149/412 (36%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                           E++ 
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY----------------------ASFCEEYLA 193

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        I    +  E++    A  +            
Sbjct: 194 --------------------------IPVIKGQKTEKEKFAGAKATYT-----------I 216

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 217 ESLMHDGKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLEKATELQGRIQKV-ARVKIDASTKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKECISMDQLEERILSLLEE 386


>gi|149182619|ref|ZP_01861089.1| prolyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148849697|gb|EDL63877.1| prolyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 476

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 79/413 (19%), Positives = 150/413 (36%), Gaps = 69/413 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    +N+   + +    TG   + +P      L   E    + +  E+  +
Sbjct: 37  GSMIIRPYGYALWENIKEELDKRIKETGHENVYMPLFIPESLLQREKDHIEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + +++ I SYR+LP  + Q     R E   R   +R+
Sbjct: 97  THGGDEELQERLCVRPTSEVLFGEHYKNIIHSYRDLPKLYNQWANVVRWEKTTRP-FLRT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E +     KM                                  V
Sbjct: 156 LEFLWQEGHTCHETDEEAHEETVKMLE--------------------------------V 183

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+  E  +          I  + T+ +               Y   S +H+        
Sbjct: 184 YAELCENILAIP------VIKGQKTEKEKFAGAKYT-------YTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G   + G  ++      F   +G   YVQ  S+G    R++ A+I   
Sbjct: 223 ------GKALQSGTSHHLGDGFAKAFGIQFSDREGNLQYVQQTSWGF-TTRIIGAMIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQ 391
            D +G++ P   AP ++ ++ I  H +   D    +  RL   G   V  D   ++ G +
Sbjct: 276 GDDRGLVIPPKAAPTQLMIVPIAQHKEGVLDFAYNLKERL--AGSFRVGIDASDKKPGWK 333

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           F   ++ G PL++  G + + +++V I  R TG +  + L+E+ N  +    +
Sbjct: 334 FNEYEMKGIPLRLEAGPRDIENNQVVIARRDTGDKVTVGLDELENRVAQLLDD 386


>gi|228983651|ref|ZP_04143854.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228776089|gb|EEM24452.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 476

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E ++++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFIAMDQLEERIPALLEE 386


>gi|307595133|ref|YP_003901450.1| prolyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
 gi|307550334|gb|ADN50399.1| prolyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
          Length = 489

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 75/416 (18%), Positives = 136/416 (32%), Gaps = 62/416 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYG 90
                KG Y W P G +    V + +R   + TG  E+  P     + +  ES     + 
Sbjct: 37  FRYPVKGAYVWRPYGMRIRRLVESYVRLVHDETGHQEVLFPVFIPYEFFSKESEHIRGFE 96

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            E+  ++                                            E        
Sbjct: 97  NEVFWVSKGGTGE--------------------------------------ERLVLRPTS 118

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            +    M   +  D T    K               R  ++               +H  
Sbjct: 119 ETAMMPMFKLWIKDHTDLPFKVYQIVSVFRAETKATRPMIRLR------EISMFKEAHTA 172

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
               +  E Q+          I  +  D+  I  L S   +W     A   +  + +   
Sbjct: 173 HANREDAERQI-----KEAMEIYKKIFDYLSIPYLISQRPEWDKFAGAVYTIAFDTVM-- 225

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            P+ K      +++G + Y GT +S      +    G   YV   SYGI + RV+AA+I 
Sbjct: 226 -PDGK-----TMQIGTVHYLGTNFSRVFDVRYLTPSGDWEYVHTTSYGI-SERVIAAMIA 278

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAH--DQVCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
              D KG+  P +VAP ++ ++ I     ++      + I   L+  G  V  DD   + 
Sbjct: 279 VHGDDKGLALPPNVAPIQVVIVPIMYKGTEEAIMREVKSITEELTNAGIRVKVDDRTDKT 338

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G ++   +++G PL++ +G K V + +V +  R T  +     E +++      +
Sbjct: 339 PGWKYNYWEMMGVPLRIEIGPKDVENRQVVLARRDTMEKFVAPREGIVDTVKELLN 394


>gi|238883498|gb|EEQ47136.1| hypothetical protein CAWG_05697 [Candida albicans WO-1]
          Length = 691

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 76/423 (17%), Positives = 142/423 (33%), Gaps = 75/423 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
            G Y   P      + +         + G      P   S   L  E    + +  E+  
Sbjct: 218 SGCYILRPNSYFVWETIQDWFNARIKKLGVQNTYFPMFVSQRVLEKEKDHIEGFAPEVAW 277

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D+ +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 278 VTRAGNSELDEHIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLR 337

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT + + +   ++   Y  ++                          
Sbjct: 338 TREFLWQEGHTAHLTKDAAANEVLQILDYYAGVYE------------------------- 372

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      +    +  E++    Y  T +         
Sbjct: 373 -----------------------ELLAVPVVKGKKTENEKFAGGDYTTTVEGFIAA---- 405

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIG-AMRVVAAV 328
                  + RGI+ G   + GT +S   + + +  +G +   +       G + RV+  +
Sbjct: 406 -------TGRGIQGGTSHHLGTNFSKMFNISVENPEGSEKPRIFAYQNSWGLSTRVIGVM 458

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFW 381
           I +  D KG++ P  +A ++  +I +        A  +   +  EKI   L   G  V  
Sbjct: 459 IMTHSDNKGLVLPPRIAQYQAVVIPVGLTSKSTDAQRKEINEGAEKIEQSLRANGIRVTG 518

Query: 382 DDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D       G +FA  +L G PL+   G K ++ ++V I  R  G +  + L+E+      
Sbjct: 519 DYREIYNPGWKFADWELKGVPLRFEFGPKDLAGNQVTIVRRNDGKKYTVKLDELDTEVPK 578

Query: 441 RFS 443
              
Sbjct: 579 LLD 581


>gi|302894055|ref|XP_003045908.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256726835|gb|EEU40195.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 555

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 78/434 (17%), Positives = 145/434 (33%), Gaps = 74/434 (17%)

Query: 27  LRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVES 83
           L+  M+  ++   G +   PL     + +    +      G  E + P  L S  L  E 
Sbjct: 67  LKAEMVEYYTEISGFFVLRPLAMHIWNEIRKWFQAHIEEMGVDETNFPMFLSSKSLEKEK 126

Query: 84  GRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +    DK +       PT E VM   +   I+S+R+LP    Q     
Sbjct: 127 DHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLRLNQWNSVV 186

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +L           
Sbjct: 187 RWEAKQTTPFLRTREFLWQEGHTAHLTEELAGVEVLEILELYAGVYEKL----------- 235

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                                     +    +  E++   Y  T
Sbjct: 236 -------------------------------------LAVPVVRGRKTENEKFAGGYYTT 258

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  +   +P N     RGI+       G  +S     T +    K  ++ +     
Sbjct: 259 ------TVEGYIPSNG----RGIQGATSHALGQNFSKMFDITVEDPQNKGSHLHVWQNSW 308

Query: 320 G-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYAR 371
           G + RV+  ++    D KG++ P  VA  +  +I +  +     +A        ++I A 
Sbjct: 309 GLSTRVIGVMVMIHGDDKGLVLPPRVAKTQAIIIPVGINKNTTPEARKQHEEQVDEIRAT 368

Query: 372 LSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L K G  V  D         +F   +L G P+++  G K  +   V    R TG +  + 
Sbjct: 369 LKKAGVRVESDWRDGYTPAWKFNDWELKGVPVRLEFGPKDAAKEVVSYARRDTGEKGTIP 428

Query: 431 LEEVINYASHRFSN 444
           + ++          
Sbjct: 429 IADIATKIPELLDT 442


>gi|47567221|ref|ZP_00237935.1| prolyl-tRNA synthetase [Bacillus cereus G9241]
 gi|206974268|ref|ZP_03235185.1| prolyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217957991|ref|YP_002336535.1| prolyl-tRNA synthetase [Bacillus cereus AH187]
 gi|229137257|ref|ZP_04265874.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST26]
 gi|47556064|gb|EAL14401.1| prolyl-tRNA synthetase [Bacillus cereus G9241]
 gi|206747508|gb|EDZ58898.1| prolyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217066763|gb|ACJ81013.1| prolyl-tRNA synthetase [Bacillus cereus AH187]
 gi|228646252|gb|EEL02469.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST26]
          Length = 476

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E ++++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFIAMDQLEERIPALLEE 386


>gi|315185841|gb|EFU19606.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6578]
          Length = 589

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 83/227 (36%), Positives = 128/227 (56%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F   L+  PR+ E   + L+++ G +    +G+YS+LPLG +    +  +I  E
Sbjct: 25  MRYSQLFPHTLRTLPREHEGTPYGLLVKGGYVRGLGQGLYSFLPLGLRVFYKLKRLIAGE 84

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+ VP +   +LW  SGR    G ++++ +DR  + M+  PTHEE M ++ R 
Sbjct: 85  MKRLGGQEVLVPLVNPMELWERSGRDLLVGGDLVKFSDRAGRQMVISPTHEEAMVELLRQ 144

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQ Q K+RDE R R G++RSREF+MKD YSF  T     + + K+F +
Sbjct: 145 SMRSYRMLPVFLYQFQTKYRDEERVRIGLLRSREFIMKDGYSFHRTYADLNNFFPKVFHA 204

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y R+F    +  I   A  G +GG+ S+EF+V ++ G+  V      
Sbjct: 205 YERVFRTCNVPYIVAEAGVGYMGGERSYEFLVPSERGDNVVIRCPSC 251



 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 8/199 (4%)

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           N   +      A  + V                 R +E+GHIF  G  YS  M  +F   
Sbjct: 392 NFGRDFEGDLVADIAKVWAGHRCYYCG-TPMQEERAVEIGHIFKLGDFYSQRMGLSFFDE 450

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G++ +  MGSYGIG  R+++ ++E++ D  GI+WP  VAPF + L++I     + R   
Sbjct: 451 RGREIHPYMGSYGIGMGRLISMIVETNSDEHGIVWPPQVAPFMVFLMSIGNSLSMKRKL- 509

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E +   L   G     DD     G +F  ADLLG P ++++  + + + KVE+K R TG 
Sbjct: 510 EALAEAL---GDRALLDDRHLSPGRKFLDADLLGIPYRILLTQELLEEGKVEVKERTTGK 566

Query: 426 REDMS---LEEVINYASHR 441
              ++   +E+ ++Y   +
Sbjct: 567 VWKLAYQRVEDFVHYLEEQ 585


>gi|28948883|pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus Bound To Cysteine
           Sulfamoyl Adenylate
 gi|28948884|pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus
 gi|28948885|pdb|1NJ5|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus Bound To Proline
           Sulfamoyl Adenylate
 gi|28948886|pdb|1NJ6|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus Bound To Alanine
           Sulfamoyl Adenylate
          Length = 501

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 90/451 (19%), Positives = 163/451 (36%), Gaps = 85/451 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  IL+E    AEI   +  ++         G++ W+P G     N   I+R   +
Sbjct: 40  FSEWFHNILEE----AEIIDQRYPVK---------GMHVWMPHGFMIRKNTLKILRRILD 86

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
           R    E+  P L    +L  E+     +  E+  +      +  + +   PT E VM  +
Sbjct: 87  R-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPM 145

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   ++S+ +LP  FYQ+   FR E +    ++R RE                       
Sbjct: 146 FALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTF------------------- 186

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                        +H     A   E QV       +  +     
Sbjct: 187 ---------------------------KEAHTIHATASEAEEQV-------ERAVEIYKE 212

Query: 238 DFDDIISLN--SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
            F+ +      +    W     +   V  + L    P+ K      +++G +   G  ++
Sbjct: 213 FFNSLGIPYLITRRPPWDKFPGSEYTVAFDTLM---PDGK-----TLQIGTVHNLGQTFA 264

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI- 354
                 F+  +G   YV    YG+ + RV+A+VI    D  G+  P  VA  ++ ++ I 
Sbjct: 265 RTFEIKFETPEGDHEYVHQTCYGL-SDRVIASVIAIHGDESGLCLPPDVAAHQVVIVPII 323

Query: 355 -KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
            K   +   +AC ++ +RL   G  V  DD   + G ++   ++ G PL+V +G + +  
Sbjct: 324 FKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEK 383

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               I  R TG +    L+ +         +
Sbjct: 384 GAAVISRRDTGEKVTADLQGIEETLRELMKD 414


>gi|15678639|ref|NP_275754.1| prolyl-tRNA synthetase [Methanothermobacter thermautotrophicus str.
           Delta H]
 gi|3334356|sp|O26708|SYP_METTH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|2621691|gb|AAB85117.1| prolyl-tRNA synthetase [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 482

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 90/451 (19%), Positives = 163/451 (36%), Gaps = 85/451 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  IL+E    AEI   +  ++         G++ W+P G     N   I+R   +
Sbjct: 20  FSEWFHNILEE----AEIIDQRYPVK---------GMHVWMPHGFMIRKNTLKILRRILD 66

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
           R    E+  P L    +L  E+     +  E+  +      +  + +   PT E VM  +
Sbjct: 67  R-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPM 125

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   ++S+ +LP  FYQ+   FR E +    ++R RE                       
Sbjct: 126 FALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTF------------------- 166

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                        +H     A   E QV       +  +     
Sbjct: 167 ---------------------------KEAHTIHATASEAEEQV-------ERAVEIYKE 192

Query: 238 DFDDIISLN--SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
            F+ +      +    W     +   V  + L    P+ K      +++G +   G  ++
Sbjct: 193 FFNSLGIPYLITRRPPWDKFPGSEYTVAFDTLM---PDGK-----TLQIGTVHNLGQTFA 244

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI- 354
                 F+  +G   YV    YG+ + RV+A+VI    D  G+  P  VA  ++ ++ I 
Sbjct: 245 RTFEIKFETPEGDHEYVHQTCYGL-SDRVIASVIAIHGDESGLCLPPDVAAHQVVIVPII 303

Query: 355 -KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
            K   +   +AC ++ +RL   G  V  DD   + G ++   ++ G PL+V +G + +  
Sbjct: 304 FKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEK 363

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               I  R TG +    L+ +         +
Sbjct: 364 GAAVISRRDTGEKVTADLQGIEETLRELMKD 394


>gi|288560211|ref|YP_003423697.1| prolyl-tRNA synthetase ProS [Methanobrevibacter ruminantium M1]
 gi|288542921|gb|ADC46805.1| prolyl-tRNA synthetase ProS [Methanobrevibacter ruminantium M1]
          Length = 468

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 166/449 (36%), Gaps = 84/449 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  IL++    AEI   +  ++         G+  WLP G +       I R+  +
Sbjct: 4   FSEWFHEILEK----AEITDSRYPIK---------GMSVWLPYGFQIRRACLNIYRDLLD 50

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDI 117
                E+  P L   + L  E      +  E+  +     K +       PT E  M  +
Sbjct: 51  SE-HDEVLFPLLIPEEELAKEGIHVKGFEDEVYWVTHGGQKELNEKLAIRPTSETAMYPM 109

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK-DAYSFDLTPEGSKHSYNK 176
           F   ++S+ +LP   YQ+   FR E +    ++R RE     +A++   +PE +      
Sbjct: 110 FSLWVRSHIDLPIKQYQVVNTFRYETKHTRPLIRVREITTFAEAHTVHSSPEEAAEQVET 169

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               Y  +F  +G+  +  +                            +   D    +E 
Sbjct: 170 GIEIYKELFDEMGIAYLISK----------------------------RPVWDKFPGAEY 201

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           T   D I  +                                 + +++G +   G  ++ 
Sbjct: 202 TMAFDTIMPDG--------------------------------KTLQIGTVHNLGQTFAK 229

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               TF+  +G   Y     YGI + RV+AA I +  D KG+I P  +AP +I++I I  
Sbjct: 230 TFEITFENKEGNHEYAYQTCYGI-SDRVIAAAIAAHGDEKGLILPPRIAPKQITIIPIIF 288

Query: 357 HD--QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            D  +     C +I   L   G  V  D    + G +F   +L G PL+  +G + + ++
Sbjct: 289 KDGGEEVMAKCLEIKKSLESKGIRVQMDTRDIRPGKKFFDWELKGTPLRFELGPRDLKNN 348

Query: 415 KVEIKHRLTGIREDMSL-EEVINYASHRF 442
              +  R TG + ++SL +++ +      
Sbjct: 349 VAILGRRDTGEKIEISLEDDLPSKVEDLL 377


>gi|260911765|ref|ZP_05918337.1| proline-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634091|gb|EEX52209.1| proline-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 493

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 167/444 (37%), Gaps = 85/444 (19%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L+++  +  Q +  G     P G    + +   +      TGA     P L     +  E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQQQLDRMFKETGAQNAYFPLLIPKSFFSRE 81

Query: 83  SGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIKS 124
           +     + KE   +                    + ++ +I  PT E ++ + +++ I+S
Sbjct: 82  AEHVKGFAKECAVVTHYRLRSSEDGSSVEVDPSAKLEEELIIRPTSETIIWNTYKNWIQS 141

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+LP    Q     R E+R R   +R+ EFL ++ ++   T E ++    KM       
Sbjct: 142 WRDLPLMCNQWCNVMRWEMRTRP-FLRTSEFLWQEGHTAHATREEAEEEAKKMLD----- 195

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                                               V+         +P           
Sbjct: 196 ------------------------------------VYAKFAQEWMAVP----------- 208

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +   V+  T  +A   D +         E      + ++ G   + G  ++     TF  
Sbjct: 209 VVCGVKSETERFAGALDTYT-------IEAMMQDGKALQSGTSHFLGQNFAKSFDVTFLN 261

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ +I I   D+  +  
Sbjct: 262 KENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPRLAPIQVVVIPIGKGDEQMKAI 320

Query: 365 CEKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             K+     +L KVG  V +DD   ++ G ++A  +L G P++V++G + + ++ VEI  
Sbjct: 321 ANKLQPVIEQLRKVGVTVKYDDSDNKRPGFKYADYELKGIPVRVVMGGRDLENNTVEIMR 380

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R T  +E +  E +  +      +
Sbjct: 381 RDTLEKETIGFEGLAEHIVSVLDD 404


>gi|315501868|ref|YP_004080755.1| tRNA synthetase class ii (g h p and s) [Micromonospora sp. L5]
 gi|315408487|gb|ADU06604.1| tRNA synthetase class II (G H P and S) [Micromonospora sp. L5]
          Length = 404

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 66/433 (15%), Positives = 129/433 (29%), Gaps = 42/433 (9%)

Query: 17  DAEIASHKLMLRTGMIHQ--HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           D       L L    +       G+  WLP G  A   V   +RE + R G   +  P L
Sbjct: 3   DHRRLGRDLELF---VSDPLAGAGLPIWLPAGAAARHAVEEYVRELERRAGYQHVYSPPL 59

Query: 75  QSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
              +L+  SG    +  +M        D   +  P        +FR+  +SYR LP    
Sbjct: 60  GKRELFERSGHLGYFADDMFPPMRLSADDEFVLRPALCPHHALVFRARGRSYRELPLRVA 119

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           ++   +R E     G +     +  +        E       ++          LG++  
Sbjct: 120 ELGGMYRAERSGVLGGLSRVRAISLNDAHNFCALEQVGDEVREILRLIGEAHAALGVRPA 179

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +R                     + +                   D +  +        
Sbjct: 180 GLRLSLRGP---------------DQRYVGDDAGWARAEELLRAALDGVDVVE--APGEA 222

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV- 312
           A Y    D+   ++ D+      +S   ++                 ++  +DG+     
Sbjct: 223 AFYGPKIDI---QIVDAAGRESTISTVQLDF--------DKPERFDLSYTDSDGRRKRPV 271

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    +G+M  + A +   H+G    W   V    + +   +A   V       +  R 
Sbjct: 272 MVHRSLVGSMERLFAYLIEVHEGAFPAWYAPVQLLLLPVDAAQADAAVG------LARRA 325

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G     D  G  +G++   A     P   ++G +  +D  V ++ R   + + M   
Sbjct: 326 EAAGLRAEVDHAG-SLGARIRDASRRRVPYTGVLGPREAADGSVSLRLRDGRVLDPMPAA 384

Query: 433 EVINYASHRFSNN 445
           E +       ++ 
Sbjct: 385 EALGLIGAVVASR 397


>gi|229077749|ref|ZP_04210378.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock4-2]
 gi|228705571|gb|EEL57928.1| Prolyl-tRNA synthetase 2 [Bacillus cereus Rock4-2]
          Length = 476

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKGTGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFVSMDQLEERIPALLEE 386


>gi|225010590|ref|ZP_03701061.1| prolyl-tRNA synthetase [Flavobacteria bacterium MS024-3C]
 gi|225005419|gb|EEG43370.1| prolyl-tRNA synthetase [Flavobacteria bacterium MS024-3C]
          Length = 491

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 76/429 (17%), Positives = 150/429 (34%), Gaps = 84/429 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG      P       +  E+   D + KE   +
Sbjct: 33  GCMVIKPYGYAIWEKMQAALDHMFKETGHENAYFPLFIPKSYFSKEASHVDGFAKECAVV 92

Query: 97  AD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                               + ++ +I  PT E ++ D +R  I+SYR+LP    Q    
Sbjct: 93  THYRLKNAEDGSGVIVDPDAKLEEELIVRPTSETIIWDTYRKWIQSYRDLPLLINQWANV 152

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E+R R  + R+ EFL ++ ++   T E +     +M   Y                 
Sbjct: 153 VRWEMRTRLFL-RTSEFLWQEGHTAHATKEEAIAEAEQMMEVYATFAQ------------ 199

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                     EF+                              I  L +  E++      
Sbjct: 200 ----------EFMA--------------------------VPVIKGLKTESERFAG---- 219

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                   L     E      + ++ G   + G  ++     T+   +GK  +V   S+G
Sbjct: 220 -------ALETYCIEAMMQDGKALQAGTSHFLGQNFAKAFDVTYATKEGKQAHVWATSWG 272

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKV 375
           + + R++ A+I +  D  G++ P  +AP ++ ++ I           EK+      L   
Sbjct: 273 V-STRLMGALIMTHSDDNGLVLPPKLAPIQVVIVPIYKGTDQLDAIAEKVAPLVKALKSK 331

Query: 376 GCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +D     + G +F   +L G P+++ +G + + ++  E+  R T  +E ++ + +
Sbjct: 332 GISVKFDQRDTHKPGFKFNEYELKGVPIRLAIGQRDLDNNTFEVARRDTLTKETVASDHL 391

Query: 435 INYASHRFS 443
           + +     +
Sbjct: 392 VEHVEQLLA 400


>gi|149280220|ref|ZP_01886343.1| prolyl-tRNA synthetase [Pedobacter sp. BAL39]
 gi|149229057|gb|EDM34453.1| prolyl-tRNA synthetase [Pedobacter sp. BAL39]
          Length = 490

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 161/437 (36%), Gaps = 90/437 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + + A++ ++   TG      P       +  E+   + +  E   +
Sbjct: 33  GCMVIKPYGYSIWEKIQAVLDQKFKDTGHSNAYFPLFIPKSYFSKEASHVEGFATECAVV 92

Query: 97  AD-----------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                              + ++ +I  PT E ++ + ++  I+SYR+LP    Q     
Sbjct: 93  THYRLKNDGNGNIIVDETAKLEEELIVRPTSETIIWNTYKGWIQSYRDLPLLINQWANVV 152

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E+R R  + R+ EFL ++ ++   T E +     +M   Y                  
Sbjct: 153 RWEMRTRLFL-RTTEFLWQEGHTAHSTAEEAIEETERMLNVY------------------ 193

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                         AD  E  +                    +  L +  E++       
Sbjct: 194 --------------ADFAENWLA----------------LPVVRGLKTPNERFAG----- 218

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  L     E      + ++ G   + G  ++      F   +GK  +V   S+G+
Sbjct: 219 ------ALDTYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFTNKEGKIEHVWATSWGV 272

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC---EKIYARLSKVG 376
            + R++ A+I +  D  G++ P  +AP ++ ++ I   D+  +      +++  +L ++G
Sbjct: 273 -STRLMGALIMAHSDDAGLVLPPKLAPIQVVIVPIYKGDEELKKISSFVDELMPKLKRLG 331

Query: 377 CDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE-------D 428
             V +DD   ++ G +FA  +L G P+++ +G + + +  VE+  R T  ++       +
Sbjct: 332 ISVKYDDRDTQRPGFKFAEYELKGVPIRLAIGGRDMENGTVELARRDTREKQTVIQDGLE 391

Query: 429 MSLEEVINYASHRFSNN 445
           + + +++        N 
Sbjct: 392 IHIAQLLEEIQQNIFNK 408


>gi|255348758|ref|ZP_05380765.1| prolyl-tRNA synthetase [Chlamydia trachomatis 70]
 gi|255503298|ref|ZP_05381688.1| prolyl-tRNA synthetase [Chlamydia trachomatis 70s]
 gi|255506977|ref|ZP_05382616.1| prolyl-tRNA synthetase [Chlamydia trachomatis D(s)2923]
 gi|407685|gb|AAA23161.1| aminoacyl-tRNA synthetase [Chlamydia trachomatis]
 gi|289525435|emb|CBJ14912.1| prolyl-tRNA synthetase [Chlamydia trachomatis Sweden2]
 gi|296434987|gb|ADH17165.1| prolyl-tRNA synthetase [Chlamydia trachomatis E/150]
 gi|296438707|gb|ADH20860.1| prolyl-tRNA synthetase [Chlamydia trachomatis E/11023]
 gi|745528|prf||2016314B AA-tRNA synthetase
          Length = 581

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 163/308 (52%), Gaps = 8/308 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MRTSLLFYRTSKNVNKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQ A+LW ++GR+ ++  E  +  L DR ++AM   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENEAMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +     LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 AQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  + C        + +    
Sbjct: 181 LAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTI-CVSGSYGANVEAAQAI 239

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR-----VSARGIEVGHIFYFGTK 293
               +  ++++            V + ++F + P++K      V  R  +    F    +
Sbjct: 240 PPSYVYDSNLLPVEEVATPNIRTVEDLEVFFNTPKHKILKTLVVKTRQKDSEKFFAICIR 299

Query: 294 YSLPMSAT 301
               ++ T
Sbjct: 300 GDRQINLT 307



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/281 (24%), Positives = 113/281 (40%), Gaps = 5/281 (1%)

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
            + +             L              A    I   L  E   +          +
Sbjct: 289 DSEKFFAICIRGDRQINLTKVASFLQVDDCELASEEEILKHLHVEKGFIGPLYCPIPCYA 348

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV---SARG 281
            +           +    +    +      P  A  D    +  D  P+N        +G
Sbjct: 349 DETTRLMTNFICANNQKDVHCKHVNWGRDIPLPAFGDFLLAEAGDLCPQNGGAPYEIFQG 408

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +EV HIF  GT+Y+   S  F+  +G      MG+YGIG  R +AA IE   D KG++WP
Sbjct: 409 VEVAHIFNLGTRYTESFSVGFQDKNGDKQLCWMGTYGIGVGRTLAACIEQLADNKGLVWP 468

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            +VAPF I+++     D        ++Y  L+  G +   DD  E++G +   +DLLG P
Sbjct: 469 LAVAPFSITILY-NGGDTEGEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDSDLLGIP 527

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            ++I+G  F S   +EI+ R +G + ++S E ++++ S   
Sbjct: 528 YKLIIGKSFQSTGLLEIESR-SGEKCNVSPENLLDWCSKNL 567


>gi|290996111|ref|XP_002680626.1| prolyl-tRNA synthetase [Naegleria gruberi]
 gi|284094247|gb|EFC47882.1| prolyl-tRNA synthetase [Naegleria gruberi]
          Length = 575

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 140/423 (33%), Gaps = 74/423 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ-SADLWVESGRYDSYGKEMLR 95
            G Y + P      + V         + G   +  P       L  E    + +  E+  
Sbjct: 78  SGCYIFRPNCFYVWEKVQNFFDGHIKKLGVQNVMFPMFVTKRALETEKDHVEGFSPEVAW 137

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +  +       PT E +M   +   IKS+R+LP    Q     R E +     +R
Sbjct: 138 VTKSGNSDLDEPIALRPTSETIMYPSYAKWIKSHRDLPLKLNQWTNVVRWEFKHAVPFIR 197

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREF  ++ +S     E +K     +   Y R +                          
Sbjct: 198 SREFYWQEGHSAFKNFEQAKTEVYDILELYKRTYE------------------------- 232

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      I    +  E++  A +  T +         
Sbjct: 233 -----------------------EILAVPVIKGKKTEAEKFAGADFTTTIEAFIPTNG-- 267

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                    R ++     + G  +S      F+  D K   V   S+G+ + R +  +I 
Sbjct: 268 ---------RAVQAATSHHLGQNFSRMFKIEFEAEDKKSKLVYQNSWGL-STRSLGVMIM 317

Query: 331 SSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDM-GE 386
              D KG++ P  VA  ++ LI +      +       + I+A+L + G  +  DD   +
Sbjct: 318 VHGDDKGMVLPPRVAFTQVVLIPLYFKNKDNSELETKSKTIFAQLEENGVRIKLDDRLEK 377

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV----INYASHRF 442
             G ++   +L G PL++ +G K + +    +  R  G +  + LE++    +N    + 
Sbjct: 378 TPGWKYNYWELRGVPLRIEIGPKDLENGVAMLCRRDNGEKWSVPLEQLTAQYVNEILDKI 437

Query: 443 SNN 445
            N+
Sbjct: 438 HNS 440


>gi|301117334|ref|XP_002906395.1| prolyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
 gi|262107744|gb|EEY65796.1| prolyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
          Length = 603

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 91/238 (38%), Positives = 139/238 (58%), Gaps = 4/238 (1%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S  + P  ++ P DA + SH+L++R G + +   G+++ LPLG++ +  + A+I +E  +
Sbjct: 35  SVLWAPTEKQAPSDAAVPSHQLLVRAGFVRKGGHGLFALLPLGRRVVAKLEALIDDEMCK 94

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G   + +  L   +LW +SGR+ S G E++ L DR +  +I GPTHEE +T +  +H  
Sbjct: 95  IGGNRVDLTVLTPNELWKQSGRWQSRGPELMTLEDRREDLLILGPTHEESITSLVAAHYN 154

Query: 124 SYRNLPF--TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +          YQI  KFRDE+RPRFG++R+REF+MKD YSFD + E +  +Y  +  +Y
Sbjct: 155 AAGTADSSLRLYQIGRKFRDEIRPRFGLLRAREFVMKDMYSFDTSYEKALQTYEDVTAAY 214

Query: 182 -LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENT 237
              +  RL L    + A+SG IGG+LSHEF VLAD GE  +  CS    D+    E  
Sbjct: 215 NEILISRLKLPVKRVEADSGNIGGNLSHEFHVLADVGEDAILSCSSSECDYAANVEKA 272



 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 15/204 (7%)

Query: 258 ATSDVHNEKLFDSLPENK------RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           A       +  D  P             RGIEVGH+FY G KYS P  AT+  A      
Sbjct: 399 AWGHFRLAQAGDCCPRCNSGGAAVLEDKRGIEVGHVFYLGQKYSKPFGATYTDAKNNKVS 458

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH--DQVCRDACEKIY 369
           ++MG YG+G  R+VAA +E+SHD  GI WP  +AP+K+ +++I     D     A   + 
Sbjct: 459 LEMGCYGLGVSRLVAAAVEASHDDHGIAWPMEIAPYKVLVMSIGGKKQDDPVSQAAWYVA 518

Query: 370 ARLSK---VGC---DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
            +L+     G    DV  DD   E  GS+ A ++L+G+P +V+VG +F  +  VE++ R 
Sbjct: 519 GKLASGDVAGLVRDDVLLDDRWRESPGSKLAESELIGYPYRVVVGKRFTKEGLVEVQTRA 578

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           T  +  ++ +E+  + +     ++
Sbjct: 579 TMEKTFLTPDELPTFFASLVEADK 602


>gi|118415374|gb|ABK83793.1| prolyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
          Length = 502

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   T    + +P      L   E    + +  E+  +
Sbjct: 63  GCMILRPYGYALWENMQKVMDEKLKATSHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 122

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R   +R+
Sbjct: 123 THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP-FLRT 181

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 182 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 210

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 211 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 248

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 249 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 301

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 302 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 360

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 361 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 412


>gi|225028058|ref|ZP_03717250.1| hypothetical protein EUBHAL_02327 [Eubacterium hallii DSM 3353]
 gi|224954658|gb|EEG35867.1| hypothetical protein EUBHAL_02327 [Eubacterium hallii DSM 3353]
          Length = 536

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 79/432 (18%), Positives = 148/432 (34%), Gaps = 77/432 (17%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
           AE+ S+   +R  MI +         P G    +N+   +      TG   + +P L   
Sbjct: 87  AELISYS-NVRGCMIIR---------PRGYAIWENIQKQLDARFKETGVENVYLPMLIPE 136

Query: 78  DLW-VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            L   E    + +  E+  +    ++ +       PT E +  D  +  + SYR+LP  +
Sbjct: 137 SLLQKEKDHVEGFAPEVAWVTHGGEEKLAERLCVRPTSETLFCDHVKDIVHSYRDLPVVY 196

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
            Q     R E   R   +RS EFL ++ ++F  T E +K    +M   Y           
Sbjct: 197 NQWCSVLRWEKTTRP-FLRSSEFLWQEGHTFHATAEEAKERTEQMLNVY----------- 244

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                                AD  E  +                    +    +  E++
Sbjct: 245 ---------------------ADFCEQVLAI----------------PLVKGRKTEKEKF 267

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
               A  +            E      + ++ G    FG  ++      +   D K   V
Sbjct: 268 AGAEATYT-----------IEALMHDCKALQSGTSHNFGNGFAKAFGIEYTNKDNKLSPV 316

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
              S+G+ + R++ A+I    D  G++ P  +AP +  +I I+       D   +I   L
Sbjct: 317 YETSWGM-STRIIGAIIMVHGDDSGLVLPPRIAPVQTMIIPIQQKKDGVLDKAFEIRDTL 375

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                 V  DD  +  G +F+  ++ G P ++ +G K +   +  I  R T  +    ++
Sbjct: 376 KS-NFSVKVDDSDKSPGWKFSEQEIQGIPTRIEIGPKDIEKGQAVIVRRDTREKIVTPID 434

Query: 433 EVINYASHRFSN 444
           ++    +     
Sbjct: 435 KIPETLTEVLET 446


>gi|294954482|ref|XP_002788190.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|294954484|ref|XP_002788191.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239903405|gb|EER19986.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239903406|gb|EER19987.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 720

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 139/441 (31%), Gaps = 87/441 (19%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           R G I  H   G Y   P      + +      E  + G      P   S   L  E   
Sbjct: 229 RGGFIRYHDISGCYILRPPVMFIWEQIQQAFDTEIKKLGVRPCCFPMFVSKSALEREKEH 288

Query: 86  YDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +    D  +       PT E +M   +   I+SYR+LP    Q     R 
Sbjct: 289 VEGFSPEVAWVTKAGDSELPEPIAIRPTSETIMYPSYADWIRSYRDLPLKLNQWTNVVRW 348

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +R+REFL                                             
Sbjct: 349 EFKQPTPFIRTREFL--------------------------------------------- 363

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                  E      T E  V      +D    +  +      +  + S +E++    A T
Sbjct: 364 -----WQEGHTAHATKEEAVGLVYSILDLYKMLYEQLLAVPVVQGVKSEMEKFAGGEATT 418

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +                 + R ++     + GT ++      F+  DG+  + +  S+G 
Sbjct: 419 T----------CEAFVACNGRAVQGATSHFLGTHFAKMFGIEFEDRDGEKKFAEQTSWGF 468

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-----------DQVCRDACEKI 368
              R +  +I    D KG++ P  VA  ++ ++ I               ++  + C+ I
Sbjct: 469 -TTRSIGVMIMEHGDDKGLVLPPRVAEVQVVIVPIPPKGAGAQWSTAELKEMIGEKCKSI 527

Query: 369 YARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           Y  L   G  V  DD   +  G +F   +L G PL++ VG+K +    V    R +G + 
Sbjct: 528 YEDLKANGVRVVLDDREDKTPGYKFNHWELKGVPLRIEVGAKDLEKGVVTFVRRNSGRKS 587

Query: 428 ------DMSLEEVINYASHRF 442
                  + ++  +       
Sbjct: 588 QEAKHASVEVKAALESIQSEL 608


>gi|144574986|gb|AAZ43589.2| threonyl-tRNA synthetase [Mycoplasma synoviae 53]
          Length = 580

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 59/418 (14%), Positives = 135/418 (32%), Gaps = 32/418 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRT 64
           FL IL++   RD      ++ L T   +    +G   WL  G    + +  ++ +   + 
Sbjct: 169 FLAILKDRKERDHRKIGKEMKLFT--FNPLGGQGFPFWLEDGMHIHNEIRNLVLKMDKKY 226

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P      L+  SG  D Y  +M +     ++ +I  P        +F S  +S
Sbjct: 227 GFTEVLTPHFGEEKLYKISGHLDHYKDDMFKPIVCENERLIPRPMTCPHHIILFGSEKRS 286

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP  + +    +R E       +     ++       +  +     + KMF      
Sbjct: 287 YRDLPIRYSEQSQLYRYEKSGALTGLERVRSMLLTEGHLFVRKDQIAQEFKKMFELISDT 346

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +   +K   +                        + + +    D           ++  
Sbjct: 347 LNAFKIKINYVSLSLRDKADKE-------------KYYANDQMWDAAEFELKKIIKELGI 393

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    D+   ++  +L     VS   ++    F    K+      ++  
Sbjct: 394 KYEEKIGEAAFYGPKVDI---QILTALNHEVTVSTIQLD----FLLPQKF----EISYTN 442

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           ++  +    +     G +      I    +      P  +AP ++++I +  +     + 
Sbjct: 443 SENNEEVPVLIHR--GLIGTYERFISILIEQTKGNLPFWLAPKQVTIIPVNENTDY--EY 498

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
            +++  +L  +      D   E++  +   A +     QVI+G    ++  +  +   
Sbjct: 499 AKEVNDKLLALDIRSKVDFRNERLSKKVREAQISKSKFQVILGEAEKTNKTISYRRYG 556


>gi|284161870|ref|YP_003400493.1| prolyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
 gi|284011867|gb|ADB57820.1| prolyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
          Length = 476

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 90/430 (20%), Positives = 160/430 (37%), Gaps = 80/430 (18%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYG 90
           I    KG+Y WLP G K    V A +RE  +R    E+  PTL   D L  ES     + 
Sbjct: 30  IRYPVKGLYVWLPFGFKIRQLVYAKLRELLDR-DHQEVYFPTLIPEDMLMKESKHIKGFE 88

Query: 91  KEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            E+  +     +  D  +   PT E  M  +F+  I+S+ +LP   YQI   FR E +  
Sbjct: 89  DEVYWVTHGGLEPLDVKLALRPTSETAMYPMFKLWIRSHADLPLKVYQIVNVFRYETKHT 148

Query: 147 FGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             ++R RE    K+A++   T E ++    +    Y                        
Sbjct: 149 RPLIRLREVTSFKEAHTVHRTYEEAEEQVRQAVKLY-----------------------K 185

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             ++F+                              I  L     +W     A   +  +
Sbjct: 186 EFYDFLA-----------------------------IPYLVFRRPEWDKFPGADYTIALD 216

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            +    P+      R +++G +      ++      ++  +G   Y     YGI + R +
Sbjct: 217 TIM---PDG-----RTLQIGTVHNLADNFARTFEIKYETPEGDHAYAHQTCYGI-SERCI 267

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           A++I    D  G++ P  VAP +I +I I  K  ++   +   K+Y RL      V  DD
Sbjct: 268 ASLISIHGDDLGLVLPFEVAPVQIVIIPILYKGKEEKVMELSRKLYERLK--CFRVVLDD 325

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV--------I 435
             E+ G+++   +L G P++  +G +   + +V +  R    +  ++ +E+         
Sbjct: 326 SDERPGAKYYKWELKGVPIRFEIGPREAENGEVVVSFRDERKKFSVTFDEITADTIFKWA 385

Query: 436 NYASHRFSNN 445
                R  + 
Sbjct: 386 KDLKERLRSR 395


>gi|239612679|gb|EEQ89666.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis ER-3]
 gi|327351753|gb|EGE80610.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 569

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 71/455 (15%), Positives = 140/455 (30%), Gaps = 70/455 (15%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +L     +P D  +      L T     +S G   +LP G   L+ + + +R +  + G 
Sbjct: 72  YLQTPAVSPADHRVVGTAQELFTT--SPYSPGSPLFLPNGTHILNKLTSFLRAQYIQYGF 129

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYGPTHEEV 113
            E+  P++    LW  SG + +Y  +M  +  R              D++    P +   
Sbjct: 130 REVLTPSIYKKSLWEVSGHWQNYKDDMYEVRGRGATGEQTAETEIGEDESYGLKPMNCPG 189

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              +F+S   SYR LP  +       R+E+     G+ R R F   D + F    +    
Sbjct: 190 HCLLFKSQNHSYRELPLRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIFCRPQQIGSE 249

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                      + +  G ++  +   + P                E     S +  +   
Sbjct: 250 -IESALKFTDTVMNIFGFENYRLVLSTRP----------------EADFIGSLELWESAE 292

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYF 290
                  +       + E   A Y    D+   ++ DS  +  ++S   +++     F  
Sbjct: 293 RQLRNALEKSGRSWELNEGDGAFYGPKIDM---QVQDSDGKFHQLSTIQLDMNLPQRFEL 349

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKI 349
               +           G+   V +     G+  R  A +IE  +                
Sbjct: 350 EYAVAEGEEDYNPETPGRAVPVLIHRAIFGSLERFFALLIEKYNGRWPFWLSPRQGIILT 409

Query: 350 SLINIKAHDQVCRDACEKIYARLS---------KVG-----------------CDVFWDD 383
                 + D+    A E   A++S                               +  D 
Sbjct: 410 V-----SQDEKLLRAAEDAAAKMSGYQAHSSSEDANSTTTTGPLKPLSPARTTFSIDLDT 464

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +G +   A  + + L  ++G K ++D  V++
Sbjct: 465 SARPLGKKIREAKEMKYNLIFVLGEKNLADGSVDV 499


>gi|261191482|ref|XP_002622149.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239589915|gb|EEQ72558.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
          Length = 569

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 71/455 (15%), Positives = 140/455 (30%), Gaps = 70/455 (15%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +L     +P D  +      L T     +S G   +LP G   L+ + + +R +  + G 
Sbjct: 72  YLQTPAVSPADHRVVGTAQELFTT--SPYSPGSPLFLPNGTHILNKLTSFLRAQYIQYGF 129

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADR-------------NDKAMIYGPTHEEV 113
            E+  P++    LW  SG + +Y  +M  +  R              D++    P +   
Sbjct: 130 REVLTPSIYKKSLWEVSGHWQNYKDDMYEVRGRGATGEQTAGTEIGEDESYGLKPMNCPG 189

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
              +F+S   SYR LP  +       R+E+     G+ R R F   D + F    +    
Sbjct: 190 HCLLFKSQNHSYRELPLRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIFCRPQQIGSE 249

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                      + +  G ++  +   + P                E     S +  +   
Sbjct: 250 -IESALKFTDTVMNIFGFENYRLVLSTRP----------------EADFIGSLELWESAE 292

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYF 290
                  +       + E   A Y    D+   ++ DS  +  ++S   +++     F  
Sbjct: 293 RQLRNALEKSGRSWELNEGDGAFYGPKIDM---QVQDSDGKFHQLSTIQLDMNLPQRFEL 349

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKI 349
               +           G+   V +     G+  R  A +IE  +                
Sbjct: 350 EYAVAEGEEDYNPETPGRAVPVLIHRAIFGSLERFFALLIEKYNGRWPFWLSPRQGIILT 409

Query: 350 SLINIKAHDQVCRDACEKIYARLS---------KVG-----------------CDVFWDD 383
                 + D+    A E   A++S                               +  D 
Sbjct: 410 V-----SQDEKLLRAAEDAAAKMSGYQAHSSSEDANSTTTTGPLKPLSPARTTFSIDLDT 464

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +G +   A  + + L  ++G K ++D  V++
Sbjct: 465 SARPLGKKIREAKEMKYNLIFVLGEKNLADGSVDV 499


>gi|222873081|gb|EEF10212.1| predicted protein [Populus trichocarpa]
          Length = 264

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 73/188 (38%), Positives = 110/188 (58%), Gaps = 3/188 (1%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+   +    RGIEVGH+FY GTKYS  M+ATF   +GK    +MG
Sbjct: 29  VVADLRNVVAGDKSPDGAGELAIERGIEVGHVFYLGTKYSQAMNATFLAENGKPSLFEMG 88

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSK 374
            YGIG  R+ AA IE +HD +GIIWPD++APF + +  I     +  ++A EK++A L  
Sbjct: 89  CYGIGVTRLPAAAIEQNHDERGIIWPDAIAPFTVVVCPIGMDRSEPVKEAAEKLHAELLA 148

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G DV  DD GE+ G+ FA  +L+G P +V++  + + + +VE +HR       M+  +V
Sbjct: 149 LGVDVILDDRGERPGAMFADWELIGVPHRVVLSDRGLKEGQVEYQHRRDTEATKMAAADV 208

Query: 435 INYASHRF 442
           + +   R 
Sbjct: 209 LGHLKQRL 216


>gi|307717987|ref|YP_003873519.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
 gi|306531712|gb|ADN01246.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
          Length = 577

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 82/227 (36%), Positives = 127/227 (55%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+ F   L+  PR+ E   + L+++ G +    +G+YS+LPLG +    +  +I  E
Sbjct: 13  MRYSQLFPHTLRTLPREHEGTPYGLLVKGGYVRGLGQGLYSFLPLGLRVFYKLKRLIAGE 72

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+  P +   +LW  SGR    G ++++ +DR  + M+  PTHEE M ++ R 
Sbjct: 73  MKRLGGQEVLAPLVNPMELWERSGRDLLVGGDLVKFSDRAGRQMVISPTHEEAMVELLRQ 132

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR LP   YQ Q K+RDE R R G++RSREF+MKD YSF  T     + + K+F +
Sbjct: 133 SMRSYRMLPVFLYQFQTKYRDEERVRIGLLRSREFIMKDGYSFHRTYADLNNFFPKVFHA 192

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y R+F    +  I   A  G +GG+ S+EF+V ++ G+  V      
Sbjct: 193 YERVFRTCNVPYIVAEAGVGYMGGERSYEFLVPSERGDNVVIRCPSC 239



 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 8/199 (4%)

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           N   +      A  + V                 R +E+GHIF  G  YS  M  +F   
Sbjct: 380 NFGRDFEGDLVADIAKVWAGHRCYYCG-TPMQEERAVEIGHIFKLGDFYSQRMGLSFVDE 438

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G++ +  MGSYGIG  R+++ ++E++ D  GI+WP  VAPF + L++I  +    +   
Sbjct: 439 RGREIHPYMGSYGIGMGRLISMIVETNSDEHGIVWPPQVAPFMVFLMSIG-NSLSMKRKV 497

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E +   L   G     DD     G +F  ADLLG P ++++  + + + KVE+K R TG 
Sbjct: 498 EALAEAL---GDRALLDDRHLSPGRKFLDADLLGIPYRILLTQELLEEGKVEVKERSTGK 554

Query: 426 REDMS---LEEVINYASHR 441
              ++   +E+ ++Y   +
Sbjct: 555 VWKLAYQRVEDFVHYLEEQ 573


>gi|251797403|ref|YP_003012134.1| prolyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247545029|gb|ACT02048.1| prolyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 482

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 148/415 (35%), Gaps = 69/415 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  +N+   +      TG      P       +  E    + +  E+  +
Sbjct: 39  GCIVFRPEGYELWENIQRDLDRRFKETGHRNAYFPLFIPESFFQKEKEHVEGFNPELPWV 98

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
            +    + ++ +   PT E +   ++   I+SYR+LP    Q     R E R     +R+
Sbjct: 99  TEAAGEKLEERLAIRPTSETMFGHMYAKWIQSYRDLPLLINQWANVVRWEKR-TLPFLRT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T + ++    +M   Y                       +   EF+ 
Sbjct: 158 SEFLWQEGHTAHETEDEAREETMRMLTVY----------------------REFVEEFLA 195

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +                  I  E T  +                          +     
Sbjct: 196 IP----------------VIEGEKTPSERFAG---------------------AVNTYSI 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   Y GTK+++     +   +    +    S+G+ + R++ A+I   
Sbjct: 219 EAMMKDGKAVQAGTSHYLGTKFAVAFDIKYLDRENTLQFAHTTSWGV-STRLIGAMIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIG 389
            D +G+  P  VAP ++ +I I             +++YA L K G  V  DD      G
Sbjct: 278 GDDRGLALPPKVAPTQVIMIPIGPAKTRDQVVGRVDELYAELKKAGVRVKVDDRSDVSPG 337

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +F   ++ G PL++ +G + + + +V +  R++G +  +  + ++       ++
Sbjct: 338 WKFNEYEMRGVPLRLELGPRDMENGQVVLASRVSGEKRIVRQDNLLAEVETMLAD 392


>gi|71894192|ref|YP_278300.1| threonyl-tRNA synthetase [Mycoplasma synoviae 53]
          Length = 581

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/418 (14%), Positives = 135/418 (32%), Gaps = 32/418 (7%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRT 64
           FL IL++   RD      ++ L T   +    +G   WL  G    + +  ++ +   + 
Sbjct: 170 FLAILKDRKERDHRKIGKEMKLFT--FNPLGGQGFPFWLEDGMHIHNEIRNLVLKMDKKY 227

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  P      L+  SG  D Y  +M +     ++ +I  P        +F S  +S
Sbjct: 228 GFTEVLTPHFGEEKLYKISGHLDHYKDDMFKPIVCENERLIPRPMTCPHHIILFGSEKRS 287

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           YR+LP  + +    +R E       +     ++       +  +     + KMF      
Sbjct: 288 YRDLPIRYSEQSQLYRYEKSGALTGLERVRSMLLTEGHLFVRKDQIAQEFKKMFELISDT 347

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +   +K   +                        + + +    D           ++  
Sbjct: 348 LNAFKIKINYVSLSLRDKADKE-------------KYYANDQMWDAAEFELKKIIKELGI 394

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    D+   ++  +L     VS   ++    F    K+      ++  
Sbjct: 395 KYEEKIGEAAFYGPKVDI---QILTALNHEVTVSTIQLD----FLLPQKF----EISYTN 443

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           ++  +    +     G +      I    +      P  +AP ++++I +  +     + 
Sbjct: 444 SENNEEVPVLIHR--GLIGTYERFISILIEQTKGNLPFWLAPKQVTIIPVNENTDY--EY 499

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
            +++  +L  +      D   E++  +   A +     QVI+G    ++  +  +   
Sbjct: 500 AKEVNDKLLALDIRSKVDFRNERLSKKVREAQISKSKFQVILGEAEKTNKTISYRRYG 557


>gi|260947818|ref|XP_002618206.1| hypothetical protein CLUG_01665 [Clavispora lusitaniae ATCC 42720]
 gi|238848078|gb|EEQ37542.1| hypothetical protein CLUG_01665 [Clavispora lusitaniae ATCC 42720]
          Length = 686

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 143/430 (33%), Gaps = 76/430 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +         + G      P   S+  L  E    + +  E+  
Sbjct: 213 SGCYILRPNSYFVWEEIQNWFNGHIKKMGVKNSYFPMFVSSRVLEKEKDHVEGFAPEVAW 272

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D+ +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 273 VTRAGSSELDEHIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWNSVVRWEFKHPQPFLR 332

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT EG+     ++   Y  ++                          
Sbjct: 333 TREFLWQEGHTAHLTKEGAATEVEQILDLYRGVYE------------------------- 367

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      +    +  E++  A Y  T +         
Sbjct: 368 -----------------------ELLAVPVVKGRKTANEKFAGADYTTTCEGFIAA---- 400

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAV 328
                  + RGI+     + GT +S   + + +  +G +             + RV+  +
Sbjct: 401 -------TGRGIQGATSHHLGTNFSKMFNISVENPEGPEKERVFAFQNSWGLSTRVIGVM 453

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIK---AHDQVCRDA----CEKIYARLSKVGCDVFW 381
           I +  D KG++ P  VA  ++ ++ +          RDA     +K+   L+  G  V  
Sbjct: 454 IMTHSDNKGLVLPPRVAQNQVVVVPVGLTSKSTPEQRDAVNGGAKKVEDALADAGLRVVG 513

Query: 382 DDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D       G +FA  +L G PL+V  G K ++  +V    R  G +  + L ++      
Sbjct: 514 DYRNNYSPGWKFADWELKGVPLRVEFGPKDLAAGQVTAVRRDNGEKYVVKLGDLSTRIPE 573

Query: 441 RFS-NNRPVL 449
                 R +L
Sbjct: 574 LLELTQREML 583


>gi|222094191|ref|YP_002528248.1| prolyl-tRNA synthetase [Bacillus cereus Q1]
 gi|221238246|gb|ACM10956.1| proline--tRNA ligase (prolyl-tRNA synthetase) [Bacillus cereus Q1]
          Length = 476

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 146/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +                 A +    E L     
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFA-------------GAKATHTIESLMH--- 221

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 222 -----DGKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E ++++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFIAMDQLEERIPALLEE 386


>gi|228906179|ref|ZP_04070068.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 200]
 gi|228853588|gb|EEM98356.1| Prolyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 200]
          Length = 502

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 146/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   TG   + +P      L   E    + +  E+  +
Sbjct: 63  GCMILRPYGYALWENMQKVMDEKLKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 122

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R   +R+
Sbjct: 123 THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP-FLRT 181

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 182 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 210

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 211 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 248

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 249 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 301

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 302 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 360

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R    +E + ++++          
Sbjct: 361 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDRKEKEFVPMDQLEERVPALLEE 412


>gi|51102322|gb|AAT95874.1| prolyl-tRNA synthetase [Naegleria gruberi]
          Length = 513

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 140/423 (33%), Gaps = 74/423 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ-SADLWVESGRYDSYGKEMLR 95
            G Y + P      + V         + G   +  P       L  E    + +  E+  
Sbjct: 16  SGCYIFRPNCFYVWEKVQNFFDGHIKKLGVQNVMFPMFVTKRALETEKDHVEGFSPEVAW 75

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +  +       PT E +M   +   IKS+R+LP    Q     R E +     +R
Sbjct: 76  VTKSGNSDLDEPIALRPTSETIMYPSYAKWIKSHRDLPLKLNQWTNVVRWEFKHAVPFIR 135

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREF  ++ +S     E +K     +   Y R +                          
Sbjct: 136 SREFYWQEGHSAFKNFEQAKTEVYDILELYKRTYE------------------------- 170

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      I    +  E++  A +  T +         
Sbjct: 171 -----------------------EILAVPVIKGKKTEAEKFAGADFTTTIEAFIPTNG-- 205

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                    R ++     + G  +S      F+  D K   V   S+G+ + R +  +I 
Sbjct: 206 ---------RAVQAATSHHLGQNFSRMFKIEFEAEDKKSKLVYQNSWGL-STRSLGVMIM 255

Query: 331 SSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDM-GE 386
              D KG++ P  VA  ++ LI +      +       + I+A+L + G  +  DD   +
Sbjct: 256 VHGDDKGMVLPPRVAFTQVVLIPLYFKNKDNSELETKSKTIFAQLEENGVRIKLDDRLEK 315

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV----INYASHRF 442
             G ++   +L G PL++ +G K + +    +  R  G +  + LE++    +N    + 
Sbjct: 316 TPGWKYNYWELRGVPLRIEIGPKDLENGVAMLCRRDNGEKWSVPLEQLTAQYVNEILDKI 375

Query: 443 SNN 445
            N+
Sbjct: 376 HNS 378


>gi|291460611|ref|ZP_06600001.1| proline--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291416802|gb|EFE90521.1| proline--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 478

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 136/411 (33%), Gaps = 66/411 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + +   +      +G    ++P L    L   ES   + +  E+  +
Sbjct: 38  GFMVIRPAGYAIWEMLMQALDSRFKASGVQNCAMPMLIPESLLSRESEHVEGFAPEVAWV 97

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                 R ++ +   PT E +  D +   +KSYR+LP    Q     R E   R  + R+
Sbjct: 98  TMGGKKRLEEKLCVRPTSEVLFCDYYSKIVKSYRDLPQLLNQWVSVIRWEKTTRPFL-RT 156

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E                                            
Sbjct: 157 REFLWQEGHTVHATAE-------------------------------------------- 172

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             +  E  +     + D            +    +  E++    A  +            
Sbjct: 173 --EAEERTILMLNIYKDVAENEMAIPV--VSGRKTDKEKFAGAIATYT-----------I 217

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG  ++      F   D +   V   S+G    R++ A+I   
Sbjct: 218 EGLMHDGQALQCGTSHNFGDGFAKAFGVQFLDKDNQRKTVHQTSWGF-TTRMIGALIMVH 276

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+  P  +AP +I ++ ++   +   D    +  RL K G  V  DD     G +F
Sbjct: 277 GDDSGLKIPPRIAPTQIMIVPVQQQKEGVLDKAFSLRERLIKAGFRVKVDDSDRSPGYKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           A  ++ G PL++ +G + +   +  +  R TG +    L+ +         
Sbjct: 337 ADCEMRGIPLRLEIGPRDIEAGQAVLVRRDTGEKLTAPLDGLEKECGELLE 387


>gi|325287208|ref|YP_004262998.1| Prolyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
 gi|324322662|gb|ADY30127.1| Prolyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
          Length = 492

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/431 (16%), Positives = 152/431 (35%), Gaps = 85/431 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG      P      L+  E    + + KE   +
Sbjct: 33  GCMVIKPYGYAIWEKMQAELDRMFKETGHENAYFPLFVPKSLFEAEEKNAEGFAKECAVV 92

Query: 97  AD-------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                                + ++ ++  PT E ++ + ++  I+SYR+LP    Q   
Sbjct: 93  THYRLQNDPDKPGKLRVDPNAKLEEELVVRPTSEAIIWNTYKGWIQSYRDLPLLINQWAN 152

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E+R R   +R+ EFL ++ ++   T   +     +M   Y                
Sbjct: 153 VVRWEMRTRL-FLRTAEFLWQEGHTAHATENEAIAEAEQMMDVY---------------- 195

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                  D + +F+                              +  L +  E++     
Sbjct: 196 ------ADFAEDFMA--------------------------VPVVKGLKTPSERFAG--- 220

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                    +     E      + ++ G   + G  ++      F   +GK  +V   S+
Sbjct: 221 --------AVETYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFASKEGKQEHVWATSW 272

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSK 374
           G+ + R++ A+I +  D  G++ P  +AP ++ ++ I   D+      EK   +   L  
Sbjct: 273 GV-STRLMGALIMTHSDDNGLVLPPKLAPIQVVIVPIYKGDEQLDAISEKVNPLVKELRA 331

Query: 375 VGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V +D+    + G +F   +L G P+++ +G + + +   E+  R T  +E ++ ++
Sbjct: 332 KGISVKFDNRDTHKPGFKFNEYELKGVPVRIAIGKRDLENGTYEVARRDTLEKEIVNADD 391

Query: 434 VINYASHRFSN 444
           VI        +
Sbjct: 392 VIGKIEFLLDD 402


>gi|257869801|ref|ZP_05649454.1| prolyl-tRNA synthetase [Enterococcus gallinarum EG2]
 gi|257803965|gb|EEV32787.1| prolyl-tRNA synthetase [Enterococcus gallinarum EG2]
          Length = 477

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 152/419 (36%), Gaps = 68/419 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  +++           G      P L     +  E+   + +  E+  +
Sbjct: 28  GSIIFRPDGFELWEHIQEEFNRFLKAEGIRNAYFPMLIPQSFFTKEADHIEGFAPELPWV 87

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
            +    + ++ +   PT E ++   F   I SYR+LP+   Q    FR E +     +R+
Sbjct: 88  TEVGNEKLEEPLALRPTSETMIGSAFSDWINSYRDLPYEINQWANVFRWEKK-TLPFLRT 146

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++      G++     +   Y R                      L  EF+ 
Sbjct: 147 SEFLWQEGHTAHEDEAGARKRTLGILDEYAR----------------------LCEEFLA 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                             +  E++              +     
Sbjct: 185 --------------------------IPVYKGQKTPSERFAG-----------AVDTYSI 207

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   Y GTK++     T+   + K  Y    S+G+ + R++ A+I + 
Sbjct: 208 EAMMKDGKAVQAGTSHYMGTKFAEAFDITYLSKENKHTYAHTTSWGV-STRLLGALIMTH 266

Query: 333 HDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            D  G+++P ++AP +I L+ +     +    +  E+++A     G  V  DD     G 
Sbjct: 267 GDENGLVFPPTIAPTQIVLMPVGPWKKNPAILEKLEELFASFKAKGIRVRLDDSDNSPGY 326

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +F   +L G  L++  G + + +  V +K R    ++ ++ +++ ++   + +   P L
Sbjct: 327 KFNEWELKGACLRIECGPRDLENGHVMVKVRDLAEKQTVAFDDLADFVDQQLAAMTPRL 385


>gi|167771272|ref|ZP_02443325.1| hypothetical protein ANACOL_02630 [Anaerotruncus colihominis DSM
           17241]
 gi|167666523|gb|EDS10653.1| hypothetical protein ANACOL_02630 [Anaerotruncus colihominis DSM
           17241]
          Length = 478

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 145/412 (35%), Gaps = 69/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  I+       G   + +P      L   E    + +  E+  +
Sbjct: 39  GCMIVRPYGCAIWENIQHILDTRFKELGHENVQMPMFIPEGLLQKEKDHVEGFAPEVAWV 98

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               ++ +       PT E +  + +   I SYR+LP  + Q     R E   R   +R+
Sbjct: 99  THGGEEKLTERLCVRPTSETLFCEHYAKIINSYRDLPKLYNQWCSVVRWEKTTRP-FLRT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF  ++ ++   T + +     +M   Y                               
Sbjct: 158 CEFWWQEGHTMHETQQEAMEETERMLGVY------------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+  E  +                         +  EQ+    A  +            
Sbjct: 187 -AEFCENSLAI----------------PVTKGRKTKKEQFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   YFG  +S     TF+G D K  Y    S+G+ + R++ A+I + 
Sbjct: 219 EAMMHDGKALQSGTSHYFGDGFSRAFGITFQGRDNKPQYPHQTSWGM-STRIIGAIIMTH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQ 391
            D  G++ P ++AP ++ ++ I  H +   +A   +  RL   G   V  DD     G +
Sbjct: 278 GDNDGLVLPPAIAPVQVVVLPIAQHKEGVLEAARAVTERLR--GVCRVKIDDSDNSAGWK 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           FA  ++ G PL++ +G + ++  +  +  R    +  ++L+E+         
Sbjct: 336 FAEYEMKGVPLRLEMGPRDIAAGQCVVVRRDNREKTVVALDELEQRIPELLR 387


>gi|288932452|ref|YP_003436512.1| prolyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
 gi|288894700|gb|ADC66237.1| prolyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
          Length = 475

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 165/427 (38%), Gaps = 71/427 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           I    KG+Y W P G K    V   +RE  +R    E+  PTL    +L  ES     + 
Sbjct: 24  IRYPVKGLYVWFPFGFKIRRLVYDKLREIMDR-DHEEVYFPTLIPETELGKESEHIKGFE 82

Query: 91  KEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            E+  +     ++ D  +   PT E  M  +F+  I+S+ +LP   YQI   FR E +  
Sbjct: 83  DEVFWVTHGGLEKLDVKLALRPTSETAMYPMFKLWIRSHADLPLRVYQIVNVFRYETKHT 142

Query: 147 FGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             ++R RE    K+A++     E ++ +       Y   +  L +  + +R         
Sbjct: 143 RPLIRLREITSFKEAHTAHRNYEEAEENVRLAVSLYKEFYDFLAIPYLILR--------- 193

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                                                        +W     A   +  +
Sbjct: 194 -------------------------------------------RPEWDKFPGADYTIAFD 210

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            +    P+      R +++G + +    ++      ++  DG   YV    YGI + R +
Sbjct: 211 TVM---PDG-----RTMQIGTVHHLADNFAKTFDIKYETPDGDHAYVHQTCYGI-SERCI 261

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           AA+I    D  G++ P  V+P +I +I I  K  ++   D  +++Y +L   G  V  DD
Sbjct: 262 AALISIHGDDLGLVLPFEVSPVQIVIIPILYKGKEEEVMDLSKRVYEKLKGYGFRVVLDD 321

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV-INYASHRF 442
             E+ G+++   +L G P+++ +G K    ++  +  R   +++ +S+EE+         
Sbjct: 322 TDERPGAKYYKWELKGVPIRIEIGPKEAERNEAVVSFRDEKVKKSLSVEELSKEKILEWA 381

Query: 443 SNNRPVL 449
              +  L
Sbjct: 382 REMKERL 388


>gi|307103976|gb|EFN52232.1| hypothetical protein CHLNCDRAFT_49107 [Chlorella variabilis]
          Length = 570

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/448 (16%), Positives = 139/448 (31%), Gaps = 72/448 (16%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
             +Y   + +   RD                                       +R++  
Sbjct: 173 LKEYQHRMEEAKKRDHRNV---------------------------------DFMRQKYW 199

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G  E+  P + + DLW  SG  D Y + M  L           P +      +F +  
Sbjct: 200 EYGYEEVVTPNIFNFDLWKVSGHADHYRENMF-LFSVEKAEWGLKPMNCPGHCLMFANRN 258

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SYR LP       +  R+E      G+ R R F   DA+ F    +         ++  
Sbjct: 259 RSYRELPLRLADFGVLHRNEFSGALQGLTRVRRFQQDDAHIFCRQDQVKAE--ISSYLKM 316

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +   +        M   + P G     E    A+                  +     + 
Sbjct: 317 MGEVYDAFGLDYKMALSTRPEGYLGELEVWNQAEA-----------------ALEEALNA 359

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +     A Y    D+    +FD+L    + +   ++    F F  ++    +  
Sbjct: 360 TGREWEMNPGDGAFYGPKIDI---TVFDALRRKYQCATVQLD----FQFPIRF----NLE 408

Query: 302 FKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           +   DG       +    +G+   + A++    +  G  WP  ++P ++ ++ I    + 
Sbjct: 409 YVAEDGSRQRPVIVHRAILGSAERMFAILT---EHWGGKWPLWISPRQVMIVPI---SEA 462

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D    +  +L   G  V  D    ++  +   A L  +   ++VG +      V ++ 
Sbjct: 463 VYDYASAVRRQLRSAGFHVDADMADRKMQKKVREAQLSQYNYILVVGEEERVAGTVNVRT 522

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPV 448
           R   +    SL  VI+  S   S+   V
Sbjct: 523 RDNQVHGMHSLAGVIDVMSRERSSRSQV 550


>gi|156083641|ref|XP_001609304.1| prolyl-tRNA synthetase [Babesia bovis T2Bo]
 gi|154796555|gb|EDO05736.1| prolyl-tRNA synthetase, putative [Babesia bovis]
          Length = 705

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 86/428 (20%), Positives = 148/428 (34%), Gaps = 69/428 (16%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESG 84
           +R GM+  +   G Y +LP      +       E   + G      P   S   L  E  
Sbjct: 233 IRGGMVEYYDISGCYIYLPSSYFIWEVFQQWFNENIKKEGVENCYFPMFVSKQKLETEKN 292

Query: 85  RYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E+  +    D   +      PT E +M   F   I+S+R+LP    Q     R
Sbjct: 293 HIEGFSPEVAWVTKYGDSDFVEPIAIRPTSETIMYPEFSKWIRSHRDLPLKLNQWCSVVR 352

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E +     +RSREFL ++ ++   + E + ++   M   Y R                 
Sbjct: 353 WEFKQPTPFLRSREFLWQEGHTAHKSEEDAMNTVMTMLRLYQRF---------------- 396

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   EF+ +                  IP E +  +                   S
Sbjct: 397 ------YEEFLAVP----------------VIPGEKSVEERFA-------------GGKS 421

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            +  E              RGI+       GT ++      F+  +G        S+G  
Sbjct: 422 TMTIEAYIPGSG-------RGIQAATSHLLGTNFAKMFDIVFEDENGVKQLAHQTSWGF- 473

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSKVGC 377
             R +   I    D +G++ P  V+  +I ++ I A  ++ +D     E +YARL K G 
Sbjct: 474 TTRSIGVSIMIHGDDQGLVIPPRVSKVQIVIVPIIAKKELQKDIMAVAEDMYARLKKAGF 533

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               DD  G   G +F   +L G PL++ +G++ +      + +R  G + D+ LE +  
Sbjct: 534 RTHLDDRVGYTPGFKFNHWELRGVPLRIEIGARDIQTQSCRVCYRYNGHKTDVKLETLEQ 593

Query: 437 YASHRFSN 444
                  +
Sbjct: 594 SIGEALED 601


>gi|168000563|ref|XP_001752985.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695684|gb|EDQ82026.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 544

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 150/436 (34%), Gaps = 73/436 (16%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESG 84
           +R  MI  +   G Y   P      +++     +E  + G      P   S   L  E  
Sbjct: 81  VRGEMIEYYDVSGCYILRPWSYSIWESIKDFFDKEIKKMGIENTYFPLFVSEKALTKEKD 140

Query: 85  RYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E+  +    D  +       PT E VM  IF   I+ +R+LP    Q     R
Sbjct: 141 HVEGFAPEVAWVTRSGDSELEEPIAIRPTSETVMYPIFAKWIRGHRDLPLRINQWCNVVR 200

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E +     +RSREFL ++ ++   T E +    +++   Y R++               
Sbjct: 201 WEFKHPTPFIRSREFLWQEGHTAFATKEEADVEVHQILELYRRVYE-------------- 246

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAAT 259
                                             E      I  + S VE++    Y  T
Sbjct: 247 ----------------------------------ELLAVPVIKGVKSEVEKFAGGLYTTT 272

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            +                + RG++       G  +S      F+  + +   V   S+G+
Sbjct: 273 VEAFIPS-----------TGRGVQGATSHCLGQNFSKMFDILFEDENRERKNVWQNSWGL 321

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              R +  ++    D KG++ P  VAP ++ +I +        + C K+  +L + G  V
Sbjct: 322 -TTRTIGVMVMIHGDNKGLVLPPRVAPIQVVVIPVPFKGIDPSEECLKVTRQLQEAGFRV 380

Query: 380 FWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR-----EDMSLEE 433
             D       G +++  +L G PL++ +G + + + +V +  R    +     +D+ +  
Sbjct: 381 KDDLRDNYSPGWKYSHWELKGVPLRIEIGPRDIENKQVRVVRRDLEDKTEGRSQDIPMAN 440

Query: 434 VINYASHRFSNNRPVL 449
           ++          +  L
Sbjct: 441 LVEKIGEILETMQKAL 456


>gi|213407904|ref|XP_002174723.1| threonyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
 gi|212002770|gb|EEB08430.1| threonyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
          Length = 464

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/459 (15%), Positives = 140/459 (30%), Gaps = 60/459 (13%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D    + +  L T  I+  S G   +LP G + ++++   +R +    G  E+  P +  
Sbjct: 39  DHRSIAARQKLFT--INHLSPGSIYFLPHGTRIINSITNFLRTQYEVLGFKEVITPLIYK 96

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKA-------MIYGPTHEEVMTDIFRSHIKSYRNLP 129
            +LW  SG    Y + M  +   ++             P +      +F    +SY+ LP
Sbjct: 97  PELWKRSGHLSKYKENMFFVTSEHNSEDQKDSSSFGLKPMNCPAHCLLFAEEERSYKELP 156

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
             F       R E      G+ R R F   D + F    +       K  +   + +   
Sbjct: 157 LRFADFSTLHRYEASGALSGLTRLRSFHQDDGHIFCRRDQVYAE-IQKDLLFIKKFYALF 215

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +  +     + P                 T      D  D           +       
Sbjct: 216 HMNDLTFHLSTRP-----------------TDYIGEADQWDHAERILEKVLTESGMNWKR 258

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                A Y    DVH   + D+   +++ +   ++    F             F+   G 
Sbjct: 259 KVGDGAFYGPKIDVH---VRDTYGRSQQTATIQLD----FQLP----KRFQLRFRTEHGD 307

Query: 309 DHYVQMGSYGIGAMRVVAAVIESS----HDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +  +Q     +   R V   +E       +     WP  ++P    ++ +  + Q     
Sbjct: 308 NRLLQQYECPVLIHRAVLGSLERFLGILIEHLNGKWPFWISPRHAIILTLNQN-QDVMAY 366

Query: 365 CEKIYARLS------KVG--------CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            +++   LS      + G          V  D     +G +   A  L +  ++++G+K 
Sbjct: 367 AKEVQKTLSLNNRSFQAGLLPLNTFVFHVDLDCNAAPLGRRLNEARKLDYNYEIVIGTKE 426

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             +  + +  R +     M +          F N    L
Sbjct: 427 TENHTLAVSERGSNANRRMIMT--PELLREMFENRMQSL 463


>gi|315641198|ref|ZP_07896275.1| proline--tRNA ligase [Enterococcus italicus DSM 15952]
 gi|315482965|gb|EFU73484.1| proline--tRNA ligase [Enterococcus italicus DSM 15952]
          Length = 556

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/234 (32%), Positives = 128/234 (54%), Gaps = 4/234 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M++S   +P L+E P +A++ SH+L++R G I Q + G+Y++LPL Q+ +  + AII++E
Sbjct: 1   MKQSHLLVPTLRETPSEADVRSHQLLVRAGYIRQIATGVYAYLPLAQRVMKKITAIIKDE 60

Query: 61  QNRTGAIEMSVPTLQSADLWV--ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            +  GA EM +P +   D W      R       +  ++DRN +  +  P+ E+   ++ 
Sbjct: 61  LDAIGANEMQMPNILPMDYWQDDACRRL--CTSSLFEVSDRNQRQYMLAPSQEKAFIELV 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           R+ ++SYR LP   YQ+Q+K+RDE +P+FG + SREFLM D YSF       + +Y ++ 
Sbjct: 119 RNEVQSYRKLPLKLYQVQMKYRDEKKPKFGFLYSREFLMTDFYSFHAGAVSLEQTYQQVE 178

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            S   I  R GL    +   +  +G +   EF+ LA  G+ Q+  S        
Sbjct: 179 SSIKTILARCGLTYHLVLGHTNRVGIEKVKEFMALASFGDEQLCLSDQGTYVAT 232



 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 98/208 (47%), Gaps = 4/208 (1%)

Query: 235 ENTDFDDIISLNSIVEQWTAPY-AATSDVHNEKLFDSL--PENKRVSARGIEVGHIFYFG 291
                D+   L   V      + ++ SD    +  D +   E      +G+++GH+    
Sbjct: 343 MTCYADEEGYLYLNVNSPRDFHISSYSDFRMVQEGDLMLDGEETLRIEKGLKIGHMMTMS 402

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            +YS  +SA F    G+    ++    IG  R+++ ++E   D   I WP++VAPF   +
Sbjct: 403 KEYSQALSAQFIDETGQAVPTRICYCSIGVSRLLSLIVEQHCDENKIQWPNTVAPFDAHV 462

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + I   D   +   ++I  ++ +   +V  DD  E+ G +FA ADL+G P+++ +G K  
Sbjct: 463 VPIDYQDSDQQQLTDEIVEQMEQAEYEVLLDDRVERAGVKFADADLIGCPIRITIGKK-A 521

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +  VEIK   +G   ++  EE++   +
Sbjct: 522 KEGIVEIKLHQSGDSLEIRKEELVATLA 549


>gi|291549825|emb|CBL26087.1| prolyl-tRNA synthetase, family I [Ruminococcus torques L2-14]
          Length = 478

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 145/412 (35%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  ++LP G    +N+   +      TG   + +P +    L   E    + +  E+  +
Sbjct: 37  GCMNYLPNGYALWENIQKNLDARFKETGVENVYLPVMIPESLLQKEKDHIEGFAPEVAWV 96

Query: 97  ADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +         PT E +  D++   ++SYR+LP  + Q     R E   R   +RS
Sbjct: 97  THGGLEELQERFCIRPTSETLFCDVWSKTVQSYRDLPKVWNQWCSVLRWEKTTRP-FLRS 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T       Y +      +++      +  + A     G     E   
Sbjct: 156 REFLWQEGHTIHAT-------YEEAEERTKQMWRVYRDFAQDVLAIPVVSGRKTESE--- 205

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                                        A      E L     
Sbjct: 206 -----------------------------------------KFAGAQDTYTIEALMH--- 221

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++     +FG+ +       +   + + H V   S+G+ + R++ A+I   
Sbjct: 222 -----DGKALQSATSHFFGSSFPSAFGIQYSDKNNELHEVYETSWGL-STRIIGALIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP +  +I I  H +   D   ++   L   G  V  DD  +  G +F
Sbjct: 276 GDDSGLVIPPRIAPVQTMIIPIAQHKEGVLDKANELVDTLKAAGYKVKIDDSDKAPGWKF 335

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  ++LG P ++ +G K + +++  I  R T  +  +SL+E+    +     
Sbjct: 336 SGQEILGIPTRIEIGPKDIENNQAVIVRRDTREKIVVSLDELTTKLAEVLET 387


>gi|256810346|ref|YP_003127715.1| prolyl-tRNA synthetase [Methanocaldococcus fervens AG86]
 gi|256793546|gb|ACV24215.1| prolyl-tRNA synthetase [Methanocaldococcus fervens AG86]
          Length = 455

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 93/453 (20%), Positives = 164/453 (36%), Gaps = 85/453 (18%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+++  IL++    AEI   +  ++         G   +LP G K       IIR+ 
Sbjct: 1   MEFSEWYSEILEK----AEIYDVRYPIK---------GCGVYLPYGFKIRRYTFEIIRDL 47

Query: 61  QNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMT 115
            +++G  E   P L   DL   E+     +  E+  +        D  +   PT E  + 
Sbjct: 48  LDKSGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTPLDVKLALRPTSETPIY 107

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
            + +  +K + +LP   YQI   FR E +    ++R RE                     
Sbjct: 108 YMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREI-------------------- 147

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                                     +    +H      +  E QV          I   
Sbjct: 148 --------------------------MTFKEAHTAHSTKEEAEEQV-------KEAISIY 174

Query: 236 NTDFDDIISLN--SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
              FD +      S   +W     A   +  + +F   P+      R +++  +   G  
Sbjct: 175 KKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIF---PDG-----RTMQIATVHNLGQN 226

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +S      F+   G   Y     YGI + RV+A++I    D KG+I P  VAP +I +I 
Sbjct: 227 FSKTFEIIFETPTGDKDYAYQTCYGI-SDRVIASIIAIHGDEKGLILPPIVAPIQIVIIP 285

Query: 354 I--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +  K  + V  +  +++Y +L      V  DD   + G +F   ++ G PL++ +G K +
Sbjct: 286 LIFKGKEDVVMEKAKELYEKLKDK-YRVHIDDRDIRPGRKFNDWEIKGVPLRIEIGPKDI 344

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + K+ +  R T  +  +   E+        +N
Sbjct: 345 ENGKITLFRRDTMEKFQVDESELEEVIEKTLNN 377


>gi|300856979|ref|YP_003781963.1| prolyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
 gi|300437094|gb|ADK16861.1| prolyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
          Length = 476

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/412 (17%), Positives = 150/412 (36%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P      +N+ + + +    TG   + +P      L   E    + +  E+  +
Sbjct: 37  GCMIIRPYAYAMWENIQSYLDKRFKETGHQNVYMPLFIPESLLQKEKDHIEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               ++ +       PT E +  + +   ++SY++LP  + Q     R E   R   +R+
Sbjct: 97  THGGNEELTEKLCVRPTSETLFCEHYAKIVQSYKDLPKLYNQWCSVVRWEKTTRP-FLRT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T + ++    +M   Y                               
Sbjct: 156 TEFLWQEGHTIHETKKEAQEETTRMLNVY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E  +          IP       D        E++    A  +            
Sbjct: 185 -ADLCEKVL---------AIPVLKGQKTDS-------EKFAGGEATYT-----------I 216

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   Y G  ++      +   +GK  YV   S+G+   R++ A+I   
Sbjct: 217 EALMHDGKALQAGTSHYLGQNFAKSFGMQYSDKEGKLQYVYQTSWGV-TTRLLGAIIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ ++ I  H +   D   ++  R++K    V  DD  +  G +F
Sbjct: 276 GDDNGLVVPPRIAPTQVIIVPIAQHKEGVLDKANELKDRIAKF-ARVKLDDSDKMAGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  ++ G P+++ VG K +  ++V +  R +G +  +S++ +          
Sbjct: 335 SEYEMKGVPIRLEVGPKDIEKNQVVLVRRDSGEKIIVSMDNLEKDIPDLLDK 386


>gi|296422769|ref|XP_002840931.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637158|emb|CAZ85122.1| unnamed protein product [Tuber melanosporum]
          Length = 459

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 138/445 (31%), Gaps = 54/445 (12%)

Query: 15  PRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
           P D  + +    L   +I H  S G   +LP G +  + + + IR +    G  E+  PT
Sbjct: 54  PPDHRLLAAAQDL---LITHPVSPGSPLFLPHGSRIFNKLISFIRSQYTLYGYEEVITPT 110

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +    LW  SG +++Y + M ++    +  +         +     +   S R+LP  + 
Sbjct: 111 IYKKSLWETSGHWENYNEHMFKVEAGEEFGLKPMNCPGHCLLFKHAAGKLSLRDLPVRYA 170

Query: 134 QIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
                 R+E      G+ R R F   DA+ F    + S+   +        ++    L  
Sbjct: 171 DFSPLHRNENSGSLSGLTRVRRFHQDDAHIFCRPSQISQE-ISSTLRFIQTVYKVFHLPP 229

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             +R  + P  G                   S +  D    +     D      +I E  
Sbjct: 230 YKLRLSTRPKEG----------------YMGSLEEWDRAEAALKASLDKSGQDWAINEGD 273

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y    D     L DS  +  + +   ++    F    +    +   +          
Sbjct: 274 GAFYGPKIDTI---LTDSDGKEHQTATIQLD----FQLPRR----LGLNYFAPAPAAEQK 322

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            + S     ++    V    +           A      +                   +
Sbjct: 323 GILSTDPEQLKESGFVTPHYNGKWPFWLSPRQAIVIPVAMT-----DEIVAYAR----AM 373

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI-----KHRLTGIRE 427
           S+   +V  D+ G  +  +   A +  +   ++VG K +    V +     +H+  G  E
Sbjct: 374 SRRTFNVDIDESGGLLSRKVRAARIKHYNYIIVVGEKNLQAKTVSLGSASPRHQEQGHEE 433

Query: 428 -------DMSLEEVINYASHRFSNN 445
                  DMS+EEV        +  
Sbjct: 434 GVEKGLKDMSVEEVYQKFVELENEY 458


>gi|332664741|ref|YP_004447529.1| Prolyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333555|gb|AEE50656.1| Prolyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
          Length = 489

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/425 (18%), Positives = 150/425 (35%), Gaps = 81/425 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +N+   + +    TG +    P       L  E+     + KE   +
Sbjct: 33  GCMVIKPYGFAIWENIRDQLDKMFKETGHVNAYFPLFIPKSFLSKEAQHVAGFAKECAVV 92

Query: 97  ADRN------------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                                 ++ +I  PT E ++ D +R+ I SYR+LP    Q    
Sbjct: 93  THHRLMNDPDGGGIIVDPDSKLEEELIVRPTSETIIWDTYRTWINSYRDLPLLINQWANV 152

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E+R R  + R+ EFL ++ ++   T E +     K+   Y                 
Sbjct: 153 VRWEMRTRLFL-RTTEFLWQEGHTAHATKEEAVEETLKILDIYATFA------------- 198

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                     E++ +                            I  + +  E++      
Sbjct: 199 ---------EEYMAM--------------------------PVIRGIKTANERFAG---- 219

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                         E      + ++ G   + G  ++      F   + +  YV   S+G
Sbjct: 220 -------AEETYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFLNENNQQEYVWATSWG 272

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           + + R++  +I +  D  G++ P  +AP ++ ++ I     V  +   KI A L   G  
Sbjct: 273 V-STRLMGGLIMTHSDDDGLVVPPKLAPTQVVIVPIPKPSPVIDEVVHKIMAALKAKGIR 331

Query: 379 VFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V +D DM  + G +FA  ++ G P+++ +G + +++ +VE+  R T  +    LE +  Y
Sbjct: 332 VKYDMDMKNRPGFKFAEHEMHGIPVRLAIGERDLANGQVEVARRDTKEKTQQPLEGIEQY 391

Query: 438 ASHRF 442
                
Sbjct: 392 IEDLL 396


>gi|302672266|ref|YP_003832226.1| prolyl-tRNA synthetase ProS [Butyrivibrio proteoclasticus B316]
 gi|302396739|gb|ADL35644.1| prolyl-tRNA synthetase ProS [Butyrivibrio proteoclasticus B316]
          Length = 477

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 139/411 (33%), Gaps = 68/411 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG     +P      L   E    + +  E+  +
Sbjct: 39  GCMVIKPAGYAIWELIQKHLDARFKETGVQNAYLPMFIPESLLQKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +   +     PT E +  D ++  I SY++LP    Q     R E   R   +RS
Sbjct: 99  THGGLEPLTERYCVRPTSETLFCDYYKGEIHSYKDLPQVLNQWCSVVRWEKETRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++    +M   Y                               
Sbjct: 158 REFLWQEGHTAHATFEEAEERTQQMLNVYADFLE-------------------------- 191

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                           D  IP        I    +  E++    A  +            
Sbjct: 192 ---------------NDMAIPV-------IKGQKTEKEKFAGAEATYT-----------V 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      R ++      FG  ++      + G D + HYV   S+G+   R + A+I   
Sbjct: 219 EALMHDGRALQSATSHNFGDGFAKAFGIQYAGKDNQLHYVNQTSWGL-TTRTIGAMIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ +I I+   +   +A  KI   L   G  V  D      G +F
Sbjct: 278 GDNSGLVVPPKIAPIQVVVIPIQQKKEGVLEAANKIAESL--AGFRVKVDSTDRTPGFKF 335

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           A  ++ G P++V +G K +   K  +  R T  + + +++EV    +    
Sbjct: 336 AEQEMRGIPVRVEIGPKDLEAGKCVLCRRDTREKIECAIDEVPAKMAELLD 386


>gi|15835287|ref|NP_297046.1| prolyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270285461|ref|ZP_06194855.1| prolyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270289472|ref|ZP_06195774.1| prolyl-tRNA synthetase [Chlamydia muridarum Weiss]
 gi|301336858|ref|ZP_07225060.1| prolyl-tRNA synthetase [Chlamydia muridarum MopnTet14]
 gi|13633968|sp|Q9PK01|SYP_CHLMU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|7190706|gb|AAF39493.1| prolyl-tRNA synthetase [Chlamydia muridarum Nigg]
          Length = 579

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 92/223 (41%), Positives = 139/223 (62%), Gaps = 2/223 (0%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S  F    +   ++A + S++L+ + G + + SKGIYS+ PL Q+ +  +  IIREE
Sbjct: 1   MKTSLLFYRTSKNANKEASVLSYELLEKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
            N  G  E+ +P LQSA+LW ++GR++++  E  +  L DR +K M   PTHEEV+++  
Sbjct: 61  LNAIGGQEVCLPLLQSAELWQKTGRWEAFLSEKLLYVLKDRENKEMCLAPTHEEVVSEFV 120

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +   + LP   YQI  KFRDE+RPRFG+MR++EFLM+D+Y+F  +PE  +  Y K+ 
Sbjct: 121 SQWLTGRKQLPVHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLR 180

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           ++Y RIF RL LK + + A+ G IG   S EF VL   GE  +
Sbjct: 181 LAYQRIFDRLNLKYVIVTADGGKIGKGKSEEFHVLCSLGEDTI 223



 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 74/330 (22%), Positives = 121/330 (36%), Gaps = 7/330 (2%)

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL--TPEGSKHSYN 175
             S+  S   LP            E    F     ++ +           + +       
Sbjct: 240 PPSYTYSSELLPMKEVATPNVRTIEDLETFFNTPRQQIIKTLVVKVHKKGSEQFFAICIR 299

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                 L              A    I   L  E   +          + +         
Sbjct: 300 GDRQVNLTKVSSFLQADDCELASDEEIIKHLHVEKGFIGPLHCPVPCYADETTRPMTNFI 359

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGT 292
             +    I    +  +   P     D    +  D  P   E      +G+EV HIF  GT
Sbjct: 360 CANNQKDIHCRYVNWERDIPLPIFGDFLLAESGDLCPQNNEAPYEIFQGVEVAHIFNLGT 419

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           +Y+   S  F+  +G+     MG+YGIG  R +AA IE   D KGI+WP +VAPF I+++
Sbjct: 420 RYTECFSVGFQDENGEKQLCWMGTYGIGVGRTLAACIEQLADSKGIVWPLAVAPFSITIL 479

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                D        + Y  L+  G +   DD  E++G +   +DLLG P ++I+G  F  
Sbjct: 480 Y-NGGDTEGEAVASQFYQSLNTAGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQK 538

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              +EI+ R +G + ++S E ++++ S   
Sbjct: 539 TGMLEIESR-SGEKYNISPENLLDWCSKNL 567


>gi|331270273|ref|YP_004396765.1| proline-tRNA ligase [Clostridium botulinum BKT015925]
 gi|329126823|gb|AEB76768.1| proline-tRNA ligase [Clostridium botulinum BKT015925]
          Length = 478

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 149/412 (36%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +  +   TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMIIRPYGYAIWENIQKYLDTKFKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D   + +   PT E +  D +   I+S+ +LP  + Q     R E   R   +R+
Sbjct: 99  TQGGNDTLAERLCVRPTSETLFCDHYAKIIQSHNDLPKKYNQWCSVVRWEKTTRP-FLRT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S      M  +Y                               
Sbjct: 158 TEFLWQEGHTAHATAEESAQETIDMLNTY------------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E  +                    I    +  E++    A  +            
Sbjct: 187 -ADFCENVLA----------------MPVIKGQKTEKEKFAGAKATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FG  +S   +  +   + +  YV   S+G+   R++ A+I   
Sbjct: 219 ESLMHDGKALQSGTSHNFGDNFSKAFNIQYNDKNSQLQYVHQTSWGV-TTRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+  P  +AP ++ ++ I  H +   +  E++ + ++K+   V  D   +  G +F
Sbjct: 278 GDDSGLKLPPRIAPLQVVIVPIAQHKEGVLEKAEELRSNIAKI-ARVKVDSSDKMPGWKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K + +++V +  R T  +  +S++E+         +
Sbjct: 337 NEYEMKGVPVRLEVGPKDIENNQVVLVRRDTREKIFVSMDELETKIPELLDD 388


>gi|299472673|emb|CBN78325.1| Proline--tRNA ligase [Ectocarpus siliculosus]
          Length = 906

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/417 (13%), Positives = 125/417 (29%), Gaps = 68/417 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
            G Y   P   +  + +   + +E           P   S      E    + +  E+  
Sbjct: 439 SGCYILRPWAYQMWEAIQQWMDKEIKELDVQNSYFPLFVSKKALEAEKAHVEGFAAEVAW 498

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     D  ++ +   PT E +M   F   I+S+R+LP    Q     R E +     +R
Sbjct: 499 VTKSGEDDLEEPIAVRPTSETIMYPAFSRWIRSHRDLPLKLNQWSNVVRWEFKNPTPFLR 558

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                                                          +        H   
Sbjct: 559 -----------------------------------------------TREFLWQEGHTAH 571

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +  + ++      +   +  E      I+   +  E++   +  T+           
Sbjct: 572 ASFEDAD-KMVIQALELYRRVYEELLAVPVIMGTKTEAEKFAGGHKTTTVEAYIS----- 625

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 + R I+     + G  +       ++  +G+       S+G+   R +   +  
Sbjct: 626 -----GTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGL-TTRTLGVCVMC 679

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
             D +G++ P  VAP +  +I I       +   +  + I   L   G  V +DD     
Sbjct: 680 HGDDQGLVLPPRVAPLQAVIIPIVTKKVKLETIVEFADPIVKSLKAAGVRVKFDDRINYT 739

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            G ++   +  G P+++ VG + +   +  +  R TG +  +  +E+ +        
Sbjct: 740 AGWKYNHWEQKGVPIRLEVGPRDIESKQTVMARRDTGEKITVPEDEITSKVVELLET 796


>gi|242398996|ref|YP_002994420.1| Prolyl-tRNA synthetase [Thermococcus sibiricus MM 739]
 gi|242265389|gb|ACS90071.1| Prolyl-tRNA synthetase [Thermococcus sibiricus MM 739]
          Length = 488

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 166/449 (36%), Gaps = 81/449 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++  +++     AEI   +  ++         G+  WLP G + + N+  +I  E  
Sbjct: 19  FSEWYNEMIEL----AEIQDKRYPVK---------GMNVWLPYGLRIMRNIENLIHMEMV 65

Query: 63  RTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMIY----GPTHEEVMTDI 117
           RTG  E+  P L     +  E+     +  E+L +    ++ +       PT E  M  +
Sbjct: 66  RTGHNEVLFPALIPESEFEREAEHIAGFHGEVLWVTHAGERPLDVKLILRPTSETAMYPM 125

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I+S+ +LPF  YQI   +R E +    ++R RE                       
Sbjct: 126 FNLWIRSHADLPFKIYQIVNVYRYETKHTRPLIRVREISRFF------------------ 167

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                        SH      +  E Q+    +  D    +   
Sbjct: 168 ----------------------------ESHTAHDSFEDAERQIREDLEIFDNLAKNLAL 199

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            +      +   +   A Y+  ++V                 R +++G + ++   ++  
Sbjct: 200 PYIVSKRPDWD-KFPGAFYSLGAEVIMPD------------GRTLQIGTMHHYKQNFAKA 246

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              T++  +G   YV   ++G+ + R+VAA++    D  G++ P ++AP ++ +I I   
Sbjct: 247 YEITYETEEGTHEYVHQTTFGM-SERLVAAIMGVHGDDSGLVLPPTIAPVQVVVIPIPMK 305

Query: 358 DQ--VCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           +         ++I   L   G  +  DD    + G +F   ++ G PL++ VG K V ++
Sbjct: 306 ESPYDVNAYAKEIAEELKTAGLRIHVDDREDVRPGRKFYDWEIKGVPLRIEVGPKDVEEN 365

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +     R T  +  +  E ++  A     
Sbjct: 366 QAVFARRDTFEKFTVKRENLVEEARKTLD 394


>gi|152974217|ref|YP_001373734.1| prolyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152022969|gb|ABS20739.1| prolyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 476

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/406 (17%), Positives = 151/406 (37%), Gaps = 67/406 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   +G   + +P     +L   E    + +  ++  +
Sbjct: 37  GCMILRPYGYALWENIQKVLDEKLKASGHENVYMPMFIPENLLQKEKDHVEGFAPKVAWV 96

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                ++  + +   PT E +  + F   ++SY +LP  + Q     R E   R   +R+
Sbjct: 97  THGGDEKLGERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRP-FLRT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                           E++ 
Sbjct: 156 TEFLWQEGHTIHETAEESQRETLNILNVY----------------------ASFCEEYLA 193

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        I    +  E++    A  +            
Sbjct: 194 --------------------------IPVIKGKKTEKEKFAGAKATYT-----------I 216

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FGT +S      +   +GK  YV   S+G+ + R++  +I   
Sbjct: 217 ESLMHDGKALQTGTSHNFGTNFSEAFEIKYLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +   +   ++  R+ +V   V  D   +  G +F
Sbjct: 276 SDNNGLVIPPKVAPVQVMIVPIAQHKEGILEKVAELKERIQQV-ARVRIDASSKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              ++ G P+++ VG K +  ++V +  R T  +E +S++++    
Sbjct: 335 NEYEMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKECVSMDQLEERI 380


>gi|291564005|emb|CBL42821.1| prolyl-tRNA synthetase, family I [butyrate-producing bacterium
           SS3/4]
          Length = 477

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/412 (17%), Positives = 148/412 (35%), Gaps = 68/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   + +   + G   + +P      L   E    + +  E+  +
Sbjct: 39  GCMVIKPDGYAIWENIQHELDKRFKKAGVKNVYMPLFIPESLLDKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +   + +   PT E +  D ++  I SYR+LP  + Q     R E   R   +RS
Sbjct: 99  TQGGLEPLQERLCVRPTSETLFCDFYQKDIHSYRDLPKVYNQWCSVVRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++    +M   Y                       D   +F+ 
Sbjct: 158 REFLWQEGHTAHATAEEAQERTIQMLNLY----------------------ADFCEDFLA 195

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        +    +  E++    A  +            
Sbjct: 196 --------------------------IPVVRGQKTDKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FG  ++      +   D +  YV   S+G+   R++ A+I   
Sbjct: 219 ESLMHDGKALQSGTSHNFGDGFAKAFGIQYSDKDNQLKYVHQTSWGM-TTRMIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D +G++ P +VAP ++ ++ I+   +   +   ++   LS     V  DD  +  G +F
Sbjct: 278 GDNEGLVLPPNVAPTQVVIVPIRQQQEGVLEKAREVEEVLS--NFRVKVDDSDKSPGWKF 335

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + +++ G P++V +G K +   +  +  R T  +  ++L E+          
Sbjct: 336 SESEMRGIPVRVELGPKDIEAGQAVLVRRDTHEKITVALSEIAEKVDELLKT 387


>gi|312077863|ref|XP_003141488.1| hypothetical protein LOAG_05904 [Loa loa]
 gi|307763347|gb|EFO22581.1| hypothetical protein LOAG_05904 [Loa loa]
          Length = 515

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 119/437 (27%), Positives = 185/437 (42%), Gaps = 59/437 (13%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLG--------------- 46
           R S   L  L    + A+I  H+LML   +I Q  KGIYS LP+G               
Sbjct: 72  RASTMLLGSLDVKAKTAQIF-HQLMLSKALIAQEHKGIYSILPIGIEKYIGLKWSLTVHF 130

Query: 47  -----QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
                Q+ +D +  +I  E N  GA ++S+P L + ++W ++GR+ ++  EM  L D+ +
Sbjct: 131 AFFFGQRIIDKLVEVIETELNAIGAYKISMPILGAKEMWQKAGRWSTFESEMFHLNDKTN 190

Query: 102 KAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +     PTHEE++T  +           P   YQ+  KFRDE     G +RSREFLM D 
Sbjct: 191 QVFCLQPTHEEMVTKLVAEQGELRKAIYPLMLYQMGPKFRDETVVGHGFLRSREFLMNDL 250

Query: 161 YSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           YSFD+T E +  +Y+ +   Y R    RLG+    +RA++G IGG++SHE+ +   T   
Sbjct: 251 YSFDITEENASDTYSLVSEVYQRIFRDRLGINFYTVRADTGNIGGEMSHEYHLPCRTSHD 310

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
            +            S   + D + S                            E      
Sbjct: 311 SIAYCAKC------SLGVNHDLLKSGEKP--------------------CCCDEEYTSII 344

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + IE+ H F  G  ++    A  +G       + M  +GIG  R++AA+I+S       +
Sbjct: 345 KTIEIAHTFQLGDLFTKKFGAKHRGQL-----LIMNCFGIGIGRLIAALIDSMSPSARAL 399

Query: 340 WPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGC---DVFWDDM-GEQIGSQFAV 394
                       + +            + I   LSK+     D+F DD     IG +  V
Sbjct: 400 RLPYPLTPFKVAVILPNKTQPETMAFAQDIIGLLSKIPSLQDDIFVDDRLDNSIGRRLRV 459

Query: 395 ADLLGFPLQVIVGSKFV 411
           A  LG P  ++VG++  
Sbjct: 460 AANLGVPHILVVGNRTA 476


>gi|225561384|gb|EEH09664.1| threonyl-tRNA synthetase [Ajellomyces capsulatus G186AR]
          Length = 577

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/454 (17%), Positives = 155/454 (34%), Gaps = 62/454 (13%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           P D  +   +  L      Q+S G   +LP G   L+ + + +R +  + G +E+  P++
Sbjct: 87  PADHRVVGTEQELFVT--SQYSPGSPLFLPNGTHILNKLTSFLRAQYTQYGFLEVLTPSI 144

Query: 75  QSADLWVESGRYDSYGKEMLRLADRN-------------DKAMIYGPTHEEVMTDIFRSH 121
               LW  SG + +Y  +M  +  RN             D++    P +      +F+S 
Sbjct: 145 YKKSLWKVSGHWQNYKDDMYEVRGRNATGEQTAETQIGEDESYGLKPMNCPGHCLLFKSQ 204

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR LP  +       R+E+     G+ R R F   D + F    +            
Sbjct: 205 NHSYRELPLRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIFCRPQQIGSE-IESALKF 263

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +    G ++  +   + P                E     S +  D          +
Sbjct: 264 TDTVMRTFGFENYRLVLSTRP----------------EKDFIGSVELWDSAERQLRDALE 307

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  +     A Y    D+   ++ DS  +  ++S   +++     F  +Y++P   
Sbjct: 308 KSGRSWELNHGDGAFYGPKIDM---QIQDSDGKFHQLSTIQLDMNLPQRFELEYAVPEGE 364

Query: 301 TFKGA--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                   GK   V +     G++    A++  +++G+   W        +++   +   
Sbjct: 365 EDYNPETPGKAVPVLIHRAIFGSLERFFALLIENYNGRWPFWLSPRQGIILTVSQDEKLL 424

Query: 359 QVCRDACEKI--YAR-LSKVG------------------CDVFWDDMGEQIGSQFAVADL 397
           Q   DA  K+  Y R LS  G                    +  D     +G +   A  
Sbjct: 425 QAADDAAAKMSGYQRVLSSSGDANSTTGPPKPLSPARTTFRIDLDTSARSLGKKIREAKK 484

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           + + L  ++G K + D  V++     G +  M+L
Sbjct: 485 MKYNLIFVLGEKNLVDGSVDV---DLGGQMMMTL 515


>gi|291542076|emb|CBL15186.1| prolyl-tRNA synthetase [Ruminococcus bromii L2-63]
          Length = 479

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 150/410 (36%), Gaps = 67/410 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+ A +      TG   + +P      L   E    + +  E   +
Sbjct: 39  GCMVIRPYGYAIWENIQADLDRRFKETGHENVYMPMFIPESLLQKEKDHVEGFAPECAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                ++  + +   PT E +  + ++  I +YR+LP  + Q     R E   R   +R+
Sbjct: 99  TVGGQEKLQERLCVRPTSETLFCEHYKKIINTYRDLPKLYNQWCSVVRWEKTTRP-FLRT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M   Y   +                           
Sbjct: 158 SEFLWQEGHTMHETEEEAREETLRMLHVYSDFYK-------------------------- 191

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                 E      +I   +  E++                    
Sbjct: 192 ----------------------ETLAIPAVIGRKTEKEKFAG-----------AEETYTI 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E    +   ++ G   YFG  ++     T+ G D K HY    S+G+ + R++ A+I   
Sbjct: 219 EPMMHNGVALQGGTSHYFGDGFAKSFGITYTGKDNKLHYPHQTSWGV-STRMIGALIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  ++P +++LI +  H +   +  E++   L++    V  D      G +F
Sbjct: 278 SDDDGLVLPPKISPIQVALIPVAQHKEGVLEKAEELRKALAEK-FRVKLDSSDHAPGWKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           A  ++ G P++V +G K +  ++  +  R T  +  +S++E++ +  +  
Sbjct: 337 AEYEMKGVPVRVEIGPKDIEKNQCVVVRRDTREKAFVSIDELVPFVENLM 386


>gi|162382786|ref|YP_893300.2| prolyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|225862437|ref|YP_002747815.1| prolyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|229182781|ref|ZP_04310021.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BGSC 6E1]
 gi|152074740|sp|A0R9A0|SYP2_BACAH RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|225785886|gb|ACO26103.1| proline--tRNA ligase [Bacillus cereus 03BB102]
 gi|228600754|gb|EEK58334.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BGSC 6E1]
          Length = 476

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   T    + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATSHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCVRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 386


>gi|66819305|ref|XP_643312.1| prolyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|60471379|gb|EAL69339.1| prolyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 674

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 93/235 (39%), Positives = 140/235 (59%), Gaps = 2/235 (0%)

Query: 4   SKYFLPILQENPRDAEIA-SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           S  F+P   +    +++  S  LM + G+I + S G YS LPL QK ++N+  II EE  
Sbjct: 53  SNLFIPFQNDQKIGSDMLESQLLMQKGGLIRRLSAGTYSTLPLAQKVMENIIKIIDEEME 112

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  +MS+P +   +LW ++GR+DS G ++++L DR  +     PTHEEV+T I  +  
Sbjct: 113 KVGGQKMSMPKMLPRELWEKTGRWDSAGDDLIKLKDRKGEEYCLAPTHEEVITTIVANES 172

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            S  + P   YQI  K+RDE+RPRFG++R REF MKD YSFD + E ++ +Y ++  +Y 
Sbjct: 173 LSNSSFPIKLYQIGEKYRDEVRPRFGLLRGREFTMKDMYSFDTSKEAAEITYYQVKQAYH 232

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            I  RL L    + A+SG IGG++SHEF VLA+ GE  +   K+  ++    E  
Sbjct: 233 NILERLELPYACVEADSGNIGGNMSHEFQVLANVGEDSLIYCKNC-NYHANIEKA 286



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 103/290 (35%), Gaps = 26/290 (8%)

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             Y K     ++      + +   +  S               +  E  ++     +   
Sbjct: 393 EEYKKYRSIIMKGIESKNVDNNSDKLLSFEEIIKHKLFIDGSVEFDEESIYKPLKSLLKK 452

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           +   +    D + L+          A   D+  + + D   ++   + RGIEVGHIFY G
Sbjct: 453 LLKRDLSRKDDLILSMN-RGQNFREAIKGDLCVQPVCD--GKSLLDTKRGIEVGHIFYLG 509

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
           TKYS  + A + GA  +   ++MG +GIG  R++ A I  +   +   +          +
Sbjct: 510 TKYSSKLGAYYTGAAQQRIPLEMGCFGIGVSRLL-ATIVETFSKEETGFIWPQQVAPYQI 568

Query: 352 INIKAHDQVCRDACEKIYARLSK----VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIV 406
           I +  H +      E +  +L      +   +  +D        +   +  +G P  +++
Sbjct: 569 IIVPKHLKSQLSLAESVSEQLQTEIPYLKSRIIIEDRSKAHFAQKVLESKFMGIPYFLVI 628

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLE-------------EVINYASHRFS 443
            +    +  +E+    +       +E             ++INY  ++F+
Sbjct: 629 DNN---NKSIELGE-SSTKVNSFKIEYKSETPTLIQNQFDLINYFKNKFN 674


>gi|320335266|ref|YP_004171977.1| prolyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
 gi|319756555|gb|ADV68312.1| prolyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
          Length = 504

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 93/259 (35%), Positives = 141/259 (54%), Gaps = 3/259 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  +    +  P +A++ASH+ ++R G + +   G+Y+ LPL  +    + A++  E
Sbjct: 1   MRWSALWAFTSRAMPSEADVASHQWLVRAGFVERVGAGLYASLPLMSRVEARLEALVHAE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
               GA E+ +P LQ A LW  SGR+D+Y  E  M  LADR  +A+   PTHEE +    
Sbjct: 61  MRAVGAQEVRLPMLQPAALWAASGRWDAYRAEGLMFSLADRAGRALTLAPTHEEAVA-FL 119

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              ++   +LP   YQ+  KFRDELRPR G++R+REF MKDAYS          ++  M 
Sbjct: 120 ARGLRREADLPKVVYQVGRKFRDELRPRGGLLRAREFTMKDAYSVHADEVSLAGTFEAMS 179

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +Y R+   LG+    + A+SG IGG +S EF+VL+D GE  V  + D +   +    + 
Sbjct: 180 GAYARLLGALGVPWRAVEADSGSIGGAVSREFMVLSDIGEDTVLTAPDGVAVNVERAVSL 239

Query: 239 FDDIISLNSIVEQWTAPYA 257
            D    + + V+ WT  +A
Sbjct: 240 PDAAPGVGARVDAWTVTFA 258



 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/171 (35%), Positives = 91/171 (53%), Gaps = 1/171 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P+ + V+ARGIEVGH F  G +Y+  + A F GADG      MG YGIG  R+  AV E 
Sbjct: 335 PQQRWVAARGIEVGHAFQLGARYTEALGARFVGADGSSRAPLMGCYGIGVSRLAQAVAEV 394

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           + DG G+ WP  +APF + +    + D   R+A E++Y  L   G D   DD  E+ G +
Sbjct: 395 TCDGWGLNWPAVIAPFGVVVTVTNSADAAQREAGERVYGALVAAGVDALLDDRAERAGVK 454

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              A+++G PL+V VG + ++   VE+  R +   E   ++ V+       
Sbjct: 455 LRDAEMIGVPLRVTVG-RDLAAGNVELFTRRSRSCEVFHVDAVVGAVQRSL 504


>gi|160941555|ref|ZP_02088887.1| hypothetical protein CLOBOL_06453 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435520|gb|EDP13287.1| hypothetical protein CLOBOL_06453 [Clostridium bolteae ATCC
           BAA-613]
          Length = 479

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 79/412 (19%), Positives = 144/412 (34%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMVIKPAGYAIWENIQKEMDRRFKETGVQNVYMPIFIPESLLEKEKDHVEGFAPEVAWV 98

Query: 97  ADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +     M   PT E +  D +   I SYR+LP  + Q     R E   R   +RS
Sbjct: 99  THGGLEELQERMCVRPTSETLFCDFYAKDIHSYRDLPRVYNQWCSVVRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   + E ++    +M   Y                               
Sbjct: 158 REFLWQEGHTAHASAEEAEARTIQMLNLYADFCE-------------------------- 191

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                 E      I    +  E++    A  +            
Sbjct: 192 ----------------------EVLAIPVIKGQKTDKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FG  ++      F   D    YV   S+G+ + R++ A+I   
Sbjct: 219 ESLMHDGKALQSGTSHNFGDGFAKAFDIQFTDKDNTLKYVHQTSWGV-STRIIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP +I ++ ++   +   D   ++  RL+K G  V  DD  +  G +F
Sbjct: 278 GDDNGLVLPPRIAPVQIMVVPVQQQKEGVLDKAYELKERLTKAGYAVKVDDTDKSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  ++ G PL+V +G K +  ++  +  R    +  +SL+E+   A      
Sbjct: 338 ADCEMRGVPLRVEIGPKDIEKNQAVLVRRDNHEKSFVSLDELEARAGEMLDT 389


>gi|302340220|ref|YP_003805426.1| prolyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301637405|gb|ADK82832.1| prolyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 562

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 128/227 (56%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR    F   L+  P+D +      +LR G I     G+YS+LPLG K ++ +  IIREE
Sbjct: 1   MRYRHLFGKTLRSTPQDVKSEGLSFLLRGGFIRPLGHGLYSYLPLGVKVVEKLRKIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R G  E+SVP +  AD+W  SGR     + M+R +DR+ +  +  P+HEE   ++ R 
Sbjct: 61  MDRLGGQEVSVPLVNPADIWKRSGREHLIDRAMIRFSDRSGRRYVLSPSHEEAFVELARY 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++SYR+ P   +Q Q KFRDE R R G++R +EF MKDAYSF  +     + + KMF +
Sbjct: 121 GLRSYRDFPVLLFQFQRKFRDEERVRQGLVRLKEFEMKDAYSFHRSATALNNFFPKMFAA 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           Y RIF R GL  +   +  G + G+ ++EF++ ++ G+  V      
Sbjct: 181 YERIFSRCGLDILTAESGVGYMRGEKAYEFLLPSNLGDDVVMSCPVC 227



 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 95/185 (51%), Gaps = 6/185 (3%)

Query: 259 TSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+   +  D   +      + R IE+G+IF  G  Y+  M   F+  +GK  Y  MGS
Sbjct: 378 VVDIAMIRKSDRCIQCGTPLEAVRAIELGNIFKLGDFYARGMELVFREENGKRLYPHMGS 437

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           YGIG  R++ A+ E+  D +G++WP S+AP++  L+ I     V R+  E++YA +S+  
Sbjct: 438 YGIGIDRLLGAIAETKRDERGLLWPPSLAPYRFFLMGIGKGASVRREV-EQLYASISE-- 494

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            D   DD  E  G +F  ++L+G P ++++ +  + + + E+  R    R  + L ++ +
Sbjct: 495 -DTLIDDRSESPGVKFKDSELMGIPWRIVISASTLEEGRAELYDRRADRRRLVPLADIRS 553

Query: 437 YASHR 441
                
Sbjct: 554 VVRAL 558


>gi|168187192|ref|ZP_02621827.1| prolyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
 gi|169294885|gb|EDS77018.1| prolyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
          Length = 478

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +  +   TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMIIRPYGYAIWENIQKYLDNKFKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D   + +   PT E +  D +   I+S+ +LP  + Q     R E   R  + R+
Sbjct: 99  TQGGNDTLAERLCVRPTSETLFCDHYAKIIQSHNDLPKKYNQWCSVVRWEKTTRPFL-RT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S      M   Y                               
Sbjct: 158 TEFLWQEGHTAHATAEESARETIDMLNVYAN----------------------------- 188

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 189 ---------FCENVLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FG  +S   +  +   + +  YV   S+G+   R++ A+I   
Sbjct: 225 ------GKALQSGTSHNFGDNFSKAFNIQYNDKNSQLQYVHQTSWGV-TTRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+  P  +AP ++ ++ I  H +   D  E++  R+SKV   V  D   +  G +F
Sbjct: 278 GDDSGLKLPPRIAPLQVVIVPIAQHKEGVLDKAEELRERISKV-ARVKVDSSDKMPGWKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K + +++V +  R T  +  +S++E+          
Sbjct: 337 NEYEMKGVPVRLEVGPKDIENNQVVLVRRDTREKIFVSMDELETKIPELLDE 388


>gi|196045229|ref|ZP_03112461.1| prolyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|196023813|gb|EDX62488.1| prolyl-tRNA synthetase [Bacillus cereus 03BB108]
          Length = 476

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   T    + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKATSHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S+     +   Y                               
Sbjct: 156 TEFLWQEGHTIHETAEESQAETLNILNLY------------------------------- 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 185 -------ASFCEDYLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 223 ------GKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 276 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 335 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 386


>gi|58264302|ref|XP_569307.1| proline-tRNA ligase [Cryptococcus neoformans var. neoformans JEC21]
 gi|57223957|gb|AAW42000.1| proline-tRNA ligase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 740

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/433 (15%), Positives = 140/433 (32%), Gaps = 73/433 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           +L+  M+  +   G Y   P        +     +E  + G  +   P   S+  L  E 
Sbjct: 254 LLKGQMLDYYDISGCYILRPWSYSIWQIIQNWFDDEIKKLGVQDCYFPMFVSSARLEKEK 313

Query: 84  GRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +        D+ +   PT E VM   +   I S+R+LP    Q     
Sbjct: 314 DHIEGFAPEVAWVTKAGSSDLDEHIAIRPTSETVMYPYYAKWINSHRDLPLKLNQWNSVV 373

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  L    +      +   Y                  
Sbjct: 374 RWEFKNPQPFLRTREFLWQEGHTAFLDKADADKEVLDILDLYR----------------- 416

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                           IP + ++ +               Y  T
Sbjct: 417 ---------------------KVYEDILAVPVIPGKKSEKEKFA---------GGDYTTT 446

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            +                + RGI+     + G  +S     T +  D     +       
Sbjct: 447 VEGFIP-----------TTGRGIQAATSHHLGQNFSKMFDITVESPDKSQGRLYAYQNSW 495

Query: 320 G-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-----AHDQVCRDACEKIYARLS 373
           G + R +  ++    D +G++ P  VA  +++++ +        +Q   DAC K+   L 
Sbjct: 496 GLSTRSLGVMVMVHGDDQGLVLPPRVALQQVAIVPVGLSKGEGKNQPIYDACLKLERELV 555

Query: 374 KVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDMSL 431
             G     D       G +F   ++ G PL++ +G + ++++  + ++ R    +  M L
Sbjct: 556 AAGIRAKADLRDGYTPGWKFNDWEMRGVPLRLELGPRDIANNSTLSVR-RYDNHKTPMPL 614

Query: 432 EEVINYASHRFSN 444
            ++ N       +
Sbjct: 615 SDIANTVRTYLDD 627


>gi|134107660|ref|XP_777441.1| hypothetical protein CNBB0150 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260133|gb|EAL22794.1| hypothetical protein CNBB0150 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 740

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/433 (15%), Positives = 140/433 (32%), Gaps = 73/433 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           +L+  M+  +   G Y   P        +     +E  + G  +   P   S+  L  E 
Sbjct: 254 LLKGQMLDYYDISGCYILRPWSYSIWQIIQNWFDDEIKKLGVQDCYFPMFVSSARLEKEK 313

Query: 84  GRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +        D+ +   PT E VM   +   I S+R+LP    Q     
Sbjct: 314 DHIEGFAPEVAWVTKAGSSDLDEHIAIRPTSETVMYPYYAKWINSHRDLPLKLNQWNSVV 373

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  L    +      +   Y                  
Sbjct: 374 RWEFKNPQPFLRTREFLWQEGHTAFLDKADADKEVLDILDLYR----------------- 416

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                           IP + ++ +               Y  T
Sbjct: 417 ---------------------KVYEDILAVPVIPGKKSEKEKFA---------GGDYTTT 446

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            +                + RGI+     + G  +S     T +  D     +       
Sbjct: 447 VEGFIP-----------TTGRGIQAATSHHLGQNFSKMFDITVESPDKSQGRLYAYQNSW 495

Query: 320 G-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-----AHDQVCRDACEKIYARLS 373
           G + R +  ++    D +G++ P  VA  +++++ +        +Q   DAC K+   L 
Sbjct: 496 GLSTRSLGVMVMVHGDDQGLVLPPRVALQQVAIVPVGLSKGEGKNQPIYDACLKLERELV 555

Query: 374 KVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDMSL 431
             G     D       G +F   ++ G PL++ +G + ++++  + ++ R    +  M L
Sbjct: 556 AAGIRAKADLRDGYTPGWKFNDWEMRGVPLRLELGPRDIANNSTLSVR-RYDNHKTPMPL 614

Query: 432 EEVINYASHRFSN 444
            ++ N       +
Sbjct: 615 SDIANTVRTYLDD 627


>gi|303285936|ref|XP_003062258.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456669|gb|EEH53970.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 828

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 131/418 (31%), Gaps = 73/418 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
            G Y   P      + +      E  +TG      P   SA     E    + +  E+  
Sbjct: 370 SGCYILRPWAYSMWECIKDFFDAEIKKTGVENCYFPLFVSAARLEAEKDHIEDFAPEVAW 429

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  +   PT E VM   F + I+S+R+LP    Q     R E +     +R
Sbjct: 430 VTRSGQSDLDIPIAVRPTSETVMYPQFANWIRSHRDLPLKLNQWCNVVRWEFKHPTPFIR 489

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++     + +      +   Y R++                          
Sbjct: 490 SREFLWQEGHTAFTNKKDADAEVRHILELYRRVYE------------------------- 524

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      I  + S  E++    Y  T +         
Sbjct: 525 -----------------------ELLAVPVIPGVKSEKEKFAGGLYTTTVEAFVPA---- 557

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                  + RGI+       G  ++     TF+ A G        S+G    R +   + 
Sbjct: 558 -------TGRGIQGATSHCLGQNFAKMFDITFENATGGRSMAWQNSWGC-TTRTIGVAVM 609

Query: 331 SSHDGKGIIWPDSVAPFKISLINI---KAHDQV---CRDACEKIYARLSKVGCDVFWDDM 384
              D  G++ P  VAP +  +I I   K   +     ++  +K+ A L   G     DD 
Sbjct: 610 VHGDDIGLVLPPRVAPLQAVVITIPNTKMSKEDTGRMKETGQKMTASLLAAGMRAKLDDR 669

Query: 385 GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                G ++   +L G PL+   G + +      +  R    +E + LE++       
Sbjct: 670 DNYTPGWKYNHWELKGVPLRCEFGPRDLEAGHCVVVRRDNRAKETVKLEDLPTRLPKL 727


>gi|154503764|ref|ZP_02040824.1| hypothetical protein RUMGNA_01588 [Ruminococcus gnavus ATCC 29149]
 gi|153795864|gb|EDN78284.1| hypothetical protein RUMGNA_01588 [Ruminococcus gnavus ATCC 29149]
          Length = 521

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 61/408 (14%), Positives = 135/408 (33%), Gaps = 58/408 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  ++LP G    +N+ A + +    TG   + +P L   +L   E    + +  E+   
Sbjct: 80  GCLNYLPNGYAIWENIQANLDKRFKETGVENVYLPVLIPENLLQKEKDHIEGFAPEV--- 136

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                             +      E L
Sbjct: 137 -------------------------------------------------AWVTHGGMEEL 147

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +       +       ++K   SY  +          +R E        S EF+     
Sbjct: 148 QERFCIRPTSETLFCDLWSKTVQSYRDLPKVWNQWCSVLRWEKTTRPFLRSREFLWQ--- 204

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
               +  + +  +         +   +  +  +   T     +      +   ++ E   
Sbjct: 205 EGHTIHATYEEAEERTLLMRDVYKSFVEDDLAIPLVTGRKTPSEKFAGAQDTYTI-EALM 263

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   +FG  ++     ++   + K H V   S+G+ + R++ A+I    D  
Sbjct: 264 HDGKALQSGTSHFFGNAFADAYGISYSDKENKLHSVYETSWGL-STRIIGAIIMVHGDDS 322

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G++ P  +AP +  +I I  H +   D   ++ A L   G     DD  +  G +F+  +
Sbjct: 323 GLVLPPHIAPVQTRVIPIAQHKEGVLDKANELLAALKAAGYRASIDDSEKSPGWKFSEQE 382

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++G P ++ +G K + + +V +  R T  +  ++++E+    S     
Sbjct: 383 MVGIPTRIEIGPKDIENGQVVVVRRDTREKIVVAMDELTEKLSEILET 430


>gi|330977708|gb|EGH77611.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 477

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 88/271 (32%), Gaps = 25/271 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y L I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YILRIEKAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M    +   +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TESESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP    +     R+E      G+MR R F   DA+ F    +    S        L +
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAES-AAFIKLTLDV 406

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G K I ++  + P     S E                   D    +  +  D    
Sbjct: 407 YADFGFKDIELKLSTRPEKRVGSDE-----------------LWDRAESALASALDSAGL 449

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
              +     A Y    +     L D L    
Sbjct: 450 PYDLQPGEGAFYGPKIEF---SLKDCLGRVW 477


>gi|325570709|ref|ZP_08146435.1| proline--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325156555|gb|EGC68735.1| proline--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 477

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 149/419 (35%), Gaps = 68/419 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  +++         + G      P L   + +  E+   + +  E+  +
Sbjct: 28  GSIIFRPDGFELWEHIQEEFNRFLKKEGIRNAYFPMLIPQNFFMKEADHIEGFAPELPWV 87

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
            +    + ++ +   PT E ++   F   I SYR+LP+   Q    FR E +     +R+
Sbjct: 88  TEVGNEKLEEPLALRPTSETMIGSAFSDWINSYRDLPYEINQWANVFRWEKK-TLPFLRT 146

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++     E ++    K+                                   
Sbjct: 147 SEFLWQEGHTAHENEEDARQRTMKILD--------------------------------- 173

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                E    C +         + T  +                          +     
Sbjct: 174 -----EYARLCEEFLAIPVYRGQKTPSERFAG---------------------AVDTYSI 207

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   Y GTK++     T+   + K  +    S+G+ + R++ A+I + 
Sbjct: 208 EAMMKDGKAVQAGTSHYMGTKFAEAFDITYLTKENKHVHAHTTSWGV-STRLLGALIMTH 266

Query: 333 HDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            D  G+++P ++AP ++ L+ +     +    +  E++YA     G  V  DD     G 
Sbjct: 267 GDENGLVFPPTIAPTQVVLLPVGPWKKNPAILEKLEELYANFKAKGIRVRLDDSDNSPGY 326

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +F   +L G  L++  G + +   KV +K R    ++ ++LE++  +         P L
Sbjct: 327 KFNEWELKGACLRIECGPRDLEAGKVMVKVRDLADKQTVALEDLEAFVDQELQAMTPRL 385


>gi|160881955|ref|YP_001560923.1| prolyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|259511590|sp|A9KL35|SYP_CLOPH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|160430621|gb|ABX44184.1| prolyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 477

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/411 (17%), Positives = 144/411 (35%), Gaps = 68/411 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCTIFRPAGYAIWENIQKELDARFKATGVENVYMPMFIPESLLNKEKDHVEGFAPEVAWV 98

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E +  D +   I+SYR+LP  + Q     R E   R   +R+
Sbjct: 99  THGGGEQLQERLCVRPTSETLFCDFYSHIIESYRDLPKLYNQWCSVVRWEKTTRP-FLRT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M   Y                               
Sbjct: 158 LEFLWQEGHTAHATAEEAEERTIQMLNLY------------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E  +                    +    +  E++    A  +            
Sbjct: 187 -ADFCEEVLAIPM----------------VRGRKTDKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG  ++   +  +   + K  YV   S+G+   R++ A+I   
Sbjct: 219 EALMHDGKALQSGTSHNFGDGFAKAFNIQYTDKENKLQYVHQTSWGM-TTRLIGALIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ ++ I    +   +   ++  +L      V  DD  +  G +F
Sbjct: 278 GDNSGLVLPPRIAPTQVVIVPIMQKKEGVLEKAAELREKLGA--FRVKVDDSDKSPGWKF 335

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +  ++ G P++V +G K +  ++  +  R T  +  +SL+E+         
Sbjct: 336 SEHEMRGIPVRVEIGPKDIEANQAVLVRRDTREKTVVSLDEIDTKIGEILE 386


>gi|163814965|ref|ZP_02206352.1| hypothetical protein COPEUT_01115 [Coprococcus eutactus ATCC 27759]
 gi|158449648|gb|EDP26643.1| hypothetical protein COPEUT_01115 [Coprococcus eutactus ATCC 27759]
          Length = 477

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 154/424 (36%), Gaps = 69/424 (16%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESG 84
           L+ G+I   + KG  +  P G    + +   + E    TG   + +P L    L   E  
Sbjct: 27  LKAGLIAYTNVKGCMAIKPAGYAIWELIQKQLDERFKATGVENVYMPMLIPESLLEKEKD 86

Query: 85  RYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E+  +     +   + M   PT E +  D +++ I+SYR+LP  + Q     R
Sbjct: 87  HVEGFAPEVAWVTYGGLNPLTERMCVRPTSETLFCDFYKNDIQSYRDLPKVYNQWCSVMR 146

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E   R   +RSREFL ++ ++   T E ++    +M   Y                   
Sbjct: 147 WEKETRP-FLRSREFLWQEGHTAHATAEEAEARTIQMLNLY------------------- 186

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                        AD  E  +                    I    +  E++    A  +
Sbjct: 187 -------------ADFCEDVLA----------------MPVIRGQKTEKEKFAGAEATYT 217

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                       E      + ++ G    FG  ++      F   D K  YV   S+G+ 
Sbjct: 218 -----------IEALMHDGKALQSGTSHNFGDGFAKAFGIQFTDKDNKLKYVHQTSWGM- 265

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R++ A+I    D  G++ P  VAP ++ +I I        +   ++  +L      V 
Sbjct: 266 TTRLIGAIIMVHGDNSGLVLPPKVAPTQVMIIPIMQKKAGVLEKAAELREKLGA--FRVK 323

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  +  G +F+  ++ G P++V +G K +  ++  +  R T  +  +SL+E+      
Sbjct: 324 VDDSDKSPGWKFSEQEMRGIPIRVEIGPKDIEANQAVLVRRDTREKITVSLDEIDAKVGE 383

Query: 441 RFSN 444
               
Sbjct: 384 LLET 387


>gi|15921730|ref|NP_377399.1| prolyl-tRNA synthetase [Sulfolobus tokodaii str. 7]
 gi|74581041|sp|Q971B5|SYP_SULTO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|15622517|dbj|BAB66508.1| 483aa long hypothetical prolyl-tRNA synthetase [Sulfolobus tokodaii
           str. 7]
          Length = 483

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 144/420 (34%), Gaps = 66/420 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G+  W+P G K   NV  +IR+  + TG  E+  P L   DL   ES     + +E+  +
Sbjct: 35  GMGVWMPYGFKIRQNVLQLIRKLLDETGHEEVLFPLLIPEDLLKKESEHIRGFEEEVYWV 94

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                + +                                                    
Sbjct: 95  TKGGSQDLDVKLALRPT------------------------------------------- 111

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                S          SY ++   Y +I      ++   R            E   L +T
Sbjct: 112 --SETSITFMESFWVKSYKQLPKKYYQIVSVFRYETKATRPMMRLREITTFKEAHTLHET 169

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSI--VEQWTAPYAATSDVHNEKLFDSLPEN 274
            E         +D  I      FD++     I    +W     A   +  + +       
Sbjct: 170 YEDAA----RQVDEAINIYKAFFDELGIPYMISKRPEWDKFAGAEYTIAFDTI------- 218

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
               +R +++G + + G  ++       +  DG   Y    SYGI + RV+A +I  + D
Sbjct: 219 -LPDSRVLQIGTVHHLGQHFTKAFDFKIQRKDGSLDYPHQTSYGI-SDRVIAVLIAINGD 276

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYARLSKVGCDVFWDDMGEQ-IG 389
             G +    +AP K+ ++ I A D+       +  +++   L   G  V  DD  E+  G
Sbjct: 277 DHGPVLNPVIAPIKVVIVPIPAKDEETTAKIINYAKEVGENLKNRGITVVIDDDKEKTPG 336

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +F + +L G PL++ +G K ++++ V IK R T   + +  ++ +   +      +  L
Sbjct: 337 EKFYIWELKGVPLRIEIGPKELNNNTVYIKRRDTFEGKSVPKDKAVEEVNTLLEKIKNDL 396


>gi|257876814|ref|ZP_05656467.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC20]
 gi|257810980|gb|EEV39800.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC20]
          Length = 477

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 149/419 (35%), Gaps = 68/419 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  +++         + G      P L   + +  E+   + +  E+  +
Sbjct: 28  GSIIFRPDGFELWEHIQEEFNRFLKKEGIRNAYFPMLIPQNFFMKEADHIEGFAPELPWV 87

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
            +    + ++ +   PT E ++   F   I SYR+LP+   Q    FR E +     +R+
Sbjct: 88  TEVGNEKLEEPLALRPTSETMIGSAFSDWINSYRDLPYEINQWANVFRWEKK-TLPFLRT 146

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++     E ++    K+                                   
Sbjct: 147 SEFLWQEGHTAHENEEDARQRTMKVLD--------------------------------- 173

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                E    C +         + T  +                          +     
Sbjct: 174 -----EYARLCEEFLAIPVYRGQKTPSERFAG---------------------AVDTYSI 207

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   Y GTK++     T+   + K  +    S+G+ + R++ A+I + 
Sbjct: 208 EAMMKDGKAVQAGTSHYMGTKFAEAFDITYLTKENKHTHAHTTSWGV-STRLLGALIMTH 266

Query: 333 HDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            D  G+++P ++AP ++ L+ +     +    +  E++YA     G  V  DD     G 
Sbjct: 267 GDENGLVFPPTIAPTQVVLLPVGPWKKNPAILEKLEELYANFKAKGIRVRLDDSDNSPGY 326

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +F   +L G  L++  G + +   KV +K R    ++ ++LEE+  +         P L
Sbjct: 327 KFNEWELKGACLRIECGPRDLEAGKVMVKVRDLADKQTVALEELEAFVDQELQAMTPRL 385


>gi|154282499|ref|XP_001542045.1| hypothetical protein HCAG_02216 [Ajellomyces capsulatus NAm1]
 gi|150410225|gb|EDN05613.1| hypothetical protein HCAG_02216 [Ajellomyces capsulatus NAm1]
          Length = 582

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 77/454 (16%), Positives = 153/454 (33%), Gaps = 62/454 (13%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           P D  +   +  L      Q+S G   +LP G   L+ + + +R +  + G +E+  P++
Sbjct: 92  PADHRVVGTEQELFVT--SQYSPGSPLFLPNGTHILNKLTSFLRAQYTQYGFLEVLTPSI 149

Query: 75  QSADLWVESGRYDSYGKEMLRLADRN-------------DKAMIYGPTHEEVMTDIFRSH 121
               LW  SG + +Y  +M  +  RN             D++    P +      +F+S 
Sbjct: 150 YKKSLWKVSGHWQNYKDDMYEVRGRNATGEQTAETQIGEDESYGLKPMNCPGHCLLFKSQ 209

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR LP  +       R+E+     G+ R R F   D + F    +            
Sbjct: 210 NHSYRELPLRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIFCRPQQIGSE-IESALKF 268

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +    G ++  +   + P                E     S +  D          +
Sbjct: 269 TDTVMRTFGFENYRLVLSTRP----------------EKDFIGSVELWDSAERQLRDALE 312

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  +     A Y    D+   ++ DS  +  ++S   +++     F  +Y++P   
Sbjct: 313 KSGRSWELNHGDGAFYGPKIDM---QIQDSDGKFHQLSTIQLDMNLPQRFELEYAVPEGE 369

Query: 301 TFKGA--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                   G+   V +     G++    A++  +++G+   W        +++   +   
Sbjct: 370 EDYDPETPGRAVPVLIHRAIFGSLERFFALLIENYNGRWPFWLSPRQGIILTVSQDEKLL 429

Query: 359 QVCRDACEKIY---ARLSKVG------------------CDVFWDDMGEQIGSQFAVADL 397
           Q   DA  K+      LS  G                    +  D     +G +   A  
Sbjct: 430 QAADDAAAKMSGYWRVLSSSGDANSTPAPPKPLSPARTTFRIDLDTSARSLGKKIREAKK 489

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           + + L  ++G K + D  V++     G +  M+L
Sbjct: 490 MKYNLIFVLGEKNLVDGSVDV---DLGGQMMMTL 520


>gi|317471035|ref|ZP_07930410.1| prolyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
 gi|316901476|gb|EFV23415.1| prolyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
          Length = 478

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 77/422 (18%), Positives = 151/422 (35%), Gaps = 68/422 (16%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGR 85
           +  +I   S KG     P G    +N+  ++  +   TG   +++P      L   E   
Sbjct: 28  KAELIEYSSVKGCMILRPNGYAIWENIQKVMDAKFKETGVENVAMPMFIPESLLEREKDH 87

Query: 86  YDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +      + ++ +   PT E +  D + + I+SYR+LP  + Q     R 
Sbjct: 88  VEGFAPEVAWVTHGGNKKLEERLCVRPTSETLFCDFYSNIIQSYRDLPKLYNQWVSVVRW 147

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E   R  +  S                                      +       +  
Sbjct: 148 EKSTRPFLRTS--------------------------------------EFYWQEGHTAH 169

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
              D + E  V         FC +      +  + T+ +     N       A Y   + 
Sbjct: 170 ATADEAEERTVQM-LNMYADFCEQYLAIPVVKGQKTEKEKFAGAN-------ATYTIEAL 221

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
           +H+               + ++ G    FG  ++      +   + K  YV   S+G+ +
Sbjct: 222 MHD--------------GKALQSGTSHNFGDGFAKAFDIQYTDKNNKLQYVHQTSWGM-S 266

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++ A+I    D  G++ P  +AP +  ++ I    +   +  E+I  RLSK    V  
Sbjct: 267 TRIIGAIIMVHGDDSGLVLPPKIAPVQTMIVPIMQKKEGVLEKAEEIRERLSK-NYKVKV 325

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  +  G +F+  ++ G P ++ +G K +  ++  I  R T  +  +SL+E+ +  S  
Sbjct: 326 DDSDKSPGWKFSEQEVQGIPTRIEIGPKDIEKNQAVIVRRDTREKIFVSLDEIESKLSEV 385

Query: 442 FS 443
             
Sbjct: 386 LD 387


>gi|119186087|ref|XP_001243650.1| hypothetical protein CIMG_03091 [Coccidioides immitis RS]
          Length = 560

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 66/413 (15%), Positives = 129/413 (31%), Gaps = 40/413 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  I      L        S G   + P G    + + + +R +  + G  E+  PT+  
Sbjct: 117 DHRIIGTDQDLFG--STPFSPGSPYFHPDGAHIFNKLMSFLRAQYKQYGFEEVITPTMYK 174

Query: 77  ADLWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTDIFRSHIKS 124
             LW +SG +  Y  +M  +  R             D+     P +      +F S  +S
Sbjct: 175 KSLWEKSGHWYIYKDDMYEVRGRGATGQTVDVEIGEDEQYGLKPMNCPGHCVLFASKTRS 234

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  F +     R+E+     G+ R R F   D + F    +  +            
Sbjct: 235 YRSLPVRFAEFSPLHRNEISGSLSGLTRVRRFHQDDGHIFCRPEQIERE-IELTLQFTES 293

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    GL+   +   + P                E     S    +          D   
Sbjct: 294 VLSTFGLEDYRLVLSTRP----------------EKDYLGSLALWNDAENQLKDALDKSG 337

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               I E   A Y    D+   ++ DS  +  ++S   +++     FG      +  + +
Sbjct: 338 KPWHINEGDGAFYGPKIDL---QIRDSRGKYHQLSTIQLDMNLPQRFGL---EAIFGSLE 391

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                      G +          ++  ++D + +    +VA       ++  ++     
Sbjct: 392 RFFALLAEHYNGRWPFWLSPRQGIILTVNNDPQVLRTAQTVASGMRGYQSLTFNESEVVA 451

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
               +Y    +    +  D     +G +   A    + L  ++G   VS+  V
Sbjct: 452 TPGLLYPA--QATFQIDVDTSSRSLGKKIREAMGRKYKLIFVIGPSDVSNGSV 502


>gi|193216362|ref|YP_001997561.1| prolyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
 gi|259511584|sp|B3QYP1|SYP_CHLT3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|193089839|gb|ACF15114.1| prolyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
          Length = 481

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/415 (17%), Positives = 145/415 (34%), Gaps = 69/415 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG +    P       +  E+   + +  E   +
Sbjct: 33  GCMVIRPNGYAIWEKMQAALDRMFKETGHVNAYFPLFIPESFIQKEAEHIEGFAPECAVV 92

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E ++   ++  I+SYR+LP    Q     R E+R R  + R+
Sbjct: 93  THGGGEELQEKLYVRPTSETIIWSSYKKWIQSYRDLPILINQWANVVRWEMRTRLFL-RT 151

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T   +K    +M   Y                         + E++ 
Sbjct: 152 TEFLWQEGHTAHATETEAKEEVLRMIEVY----------------------RHFAEEYMA 189

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        I+ + +  E++   +                
Sbjct: 190 --------------------------IPVIVGMKTESEKFAGAHETF-----------CI 212

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   + G  ++      F+  DG   YV   S+G+ + R++ A+I + 
Sbjct: 213 EAMMQDGKALQAGTSHHLGQNFAKAFDCKFQTKDGSLEYVWASSWGV-STRLIGALIMAH 271

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGS 390
            D KG++ P  +A  +  ++ I   D     +   ++   L   G  VF DD  +   G 
Sbjct: 272 SDDKGLVLPPKLASRQAVIVPILKGDKAAVLEKAVELEKMLKAAGVQVFLDDSEQNTPGW 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE-EVINYASHRFSN 444
           +FA  +L G P+++ +G + V+  K  +  R T  +E + ++            +
Sbjct: 332 KFAEYELQGIPVRIELGPRDVAAGKCVVARRDTSEKETLEIDTAFPQKIKDLLDS 386


>gi|257867921|ref|ZP_05647574.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257874250|ref|ZP_05653903.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257802004|gb|EEV30907.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257808414|gb|EEV37236.1| prolyl-tRNA synthetase [Enterococcus casseliflavus EC10]
          Length = 477

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 73/419 (17%), Positives = 149/419 (35%), Gaps = 68/419 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  +++         + G      P L   + +  E+   + +  E+  +
Sbjct: 28  GSIIFRPDGFELWEHIQEEFNRFLKKEGIRNAYFPMLIPQNFFMKEADHIEGFAPELPWV 87

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
            +    + ++ +   PT E ++   F   I SYR+LP+   Q    FR E +     +R+
Sbjct: 88  TEVGNEKLEEPLALRPTSETMIGSAFSDWINSYRDLPYEINQWANVFRWEKK-TLPFLRT 146

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++     E ++    K+                                   
Sbjct: 147 SEFLWQEGHTAHENEEDARQRTMKVLD--------------------------------- 173

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                E    C +         + T  +                          +     
Sbjct: 174 -----EYARLCEEFLAIPVYRGQKTPSERFAG---------------------AVDTYSI 207

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   Y GTK++     T+   + K  Y    S+G+ + R++ A+I + 
Sbjct: 208 EAMMKDGKAVQAGTSHYMGTKFAEAFDITYLTKENKHTYAHTTSWGV-STRLLGALIMTH 266

Query: 333 HDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            D  G+++P ++AP ++ L+ +     +    +  E++YA     G  V  DD     G 
Sbjct: 267 GDENGLVFPPTIAPTQVVLLPVGPWKKNPAILEKLEELYANFKAKGIRVRLDDSDNSPGY 326

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +F   +L G  L++  G + +   KV +K R    ++ ++LEE+  +         P L
Sbjct: 327 KFNEWELKGACLRIECGPRDLEAGKVMVKVRDLPDKQTVALEELEAFVDQELQAMTPRL 385


>gi|256397192|ref|YP_003118756.1| prolyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256363418|gb|ACU76915.1| prolyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 480

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 138/415 (33%), Gaps = 70/415 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDK 102
           P G +  + + A +      TG      P L        E+   + +  E+  +     K
Sbjct: 42  PYGYRIWELLQADLDGRIKDTGHENAYFPMLIPESYLKREAEHVEGFAPELAVVTHAGGK 101

Query: 103 AMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E V+ ++    I SYR+LP    Q     R ELRPR   +R+ EFL +
Sbjct: 102 ELEEPLVLRPTSETVIGEMMAKWISSYRDLPLLLNQWANVVRWELRPRL-FLRTTEFLWQ 160

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++       +     +M   Y                                     
Sbjct: 161 EGHTAHADEAEAMAETLQMLDVYEH----------------------------------- 185

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
               C        +P E T  +                          +     E     
Sbjct: 186 ---VCRDLAAIPVVPGEKTPGERFAG---------------------AVKTFTVEGMMRD 221

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y GT ++      F    G+       S+G+ + R+V   I +  D KG+
Sbjct: 222 GKALQSGTTHYLGTNFAKAFGIQFADDAGRLELCHTTSWGM-STRLVGGTIMTHGDDKGL 280

Query: 339 IWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVA 395
           + P  +AP+++ ++ I   D  +    A  ++  RL   G  V  DD  +   G +F   
Sbjct: 281 VLPPKLAPYQVVIVPIARGDQAETVLAAVRELAGRLKAAGIRVHVDDRPQVSPGFKFNDW 340

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHRFSNNRPVL 449
           ++ G PL++ +G + ++     +  RL    +  +SL+           + +  L
Sbjct: 341 EMRGVPLRLEIGPRDLAAGTALLAKRLGDQGKVAISLDTAPEVLLDTLDDFQEFL 395


>gi|118444161|ref|YP_878835.1| prolyl-tRNA synthetase [Clostridium novyi NT]
 gi|152016596|sp|A0Q2I3|SYP_CLONN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118134617|gb|ABK61661.1| prolyl-tRNA synthetase [Clostridium novyi NT]
          Length = 478

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +  +   TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMIIRPYGYAIWENIQKYLDTKFKETGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D   + +   PT E +  D +   I+S+ +LP  + Q     R E   R   +R+
Sbjct: 99  TQGGNDTLAERLCVRPTSETLFCDHYAKIIQSHNDLPKKYNQWCSVVRWEKTTRP-FLRT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E S      M   Y                               
Sbjct: 158 TEFLWQEGHTAHATAEESAKETIDMLNVYAN----------------------------- 188

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    FC        I  + T+ +             A Y   S +H+        
Sbjct: 189 ---------FCENVLAIPVIKGQKTEKEKFAGAK-------ATYTIESLMHD-------- 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G    FG  +S   +  +   + +  YV   S+G+   R++ A+I   
Sbjct: 225 ------GKALQSGTSHNFGDNFSKAFNIQYNDKNSQLQYVHQTSWGV-TTRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+  P  +AP ++ ++ I  H +   D  E++  R++KV   V  D   +  G +F
Sbjct: 278 GDDSGLKLPPRIAPLQVVIVPIAQHKEGVLDKAEELRQRIAKV-ARVKVDSSDKMPGWKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K + +++V +  R T  +  +S++E+          
Sbjct: 337 NEYEMKGVPVRLEVGPKDIENNQVVLVRRDTREKIFVSMDELETKIPELLDE 388


>gi|240274490|gb|EER38006.1| threonyl-tRNA synthetase [Ajellomyces capsulatus H143]
          Length = 550

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 80/454 (17%), Positives = 155/454 (34%), Gaps = 62/454 (13%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           P D  +   +  L      Q+S G   +LP G   L+ + + +R +  + G +E+  P++
Sbjct: 88  PADHRVVGTEQELFVT--SQYSPGSPLFLPNGTHILNKLTSFLRAQYTQYGFLEVLTPSI 145

Query: 75  QSADLWVESGRYDSYGKEMLRLADRN-------------DKAMIYGPTHEEVMTDIFRSH 121
               LW  SG + +Y  +M  +  RN             D++    P +      +F+S 
Sbjct: 146 YKKSLWKVSGHWQNYKDDMYEVRGRNATGEQTAETQIGEDESYGLKPMNCPGHCLLFKSQ 205

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             SYR LP  +       R+E+     G+ R R F   D + F    +            
Sbjct: 206 NHSYRELPLRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIFCRPQQIGSE-IESALKF 264

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              +    G ++  +   + P                E     S +  D          +
Sbjct: 265 TDTVMRTFGFENYRLVLSTRP----------------EKDFIGSVELWDSAERQLRDALE 308

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  +     A Y    D+   ++ DS  +  ++S   +++     F  +Y++P   
Sbjct: 309 KSGRSWELNHGDGAFYGPKIDM---QIQDSDGKFHQLSTIQLDMNLPQRFELEYAVPEGE 365

Query: 301 TFKGA--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                   GK   V +     G++    A++  +++G+   W        +++   +   
Sbjct: 366 EDYNPETPGKAVPVLIHRAIFGSLERFFALLIENYNGRWPFWLSPRQGIILTVSQDEKLL 425

Query: 359 QVCRDACEKI--YAR-LSKVG------------------CDVFWDDMGEQIGSQFAVADL 397
           Q   DA  K+  Y R LS  G                    +  D     +G +   A  
Sbjct: 426 QAADDAAAKMSGYRRVLSSSGDANSTTGPPKPLSPARTTFRIDLDTSARSLGKKIREAKK 485

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           + + L  ++G K + D  V++     G +  M+L
Sbjct: 486 MKYNLIFVLGEKNLVDGSVDV---DLGGQMMMAL 516


>gi|257413581|ref|ZP_04743496.2| proline--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257203071|gb|EEV01356.1| proline--tRNA ligase [Roseburia intestinalis L1-82]
          Length = 241

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 99/229 (43%), Positives = 133/229 (58%), Gaps = 3/229 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYS-WLPLGQKALDNVNAIIRE 59
           M+  K      +E P D  I SH LM++ G +   + GIYS +LPL ++    +  I+RE
Sbjct: 9   MKLEKLIGERFRERPADCVIDSHALMVKGGYMKYMANGIYSSYLPL-KRITCKIEQILRE 67

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E ++    E+S P +  A LW ESGRY+S G+E+LR  DRN+  M+ G THEE    + R
Sbjct: 68  EMDKLDGQEVSFPVVMPASLWEESGRYESVGEELLRFTDRNNAKMVLGMTHEEAAVHLVR 127

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            + KSY   PF  YQIQ KFRDE RPR G++R REF MKDAYSF  + E     Y K   
Sbjct: 128 EYAKSYNKYPFMIYQIQTKFRDEARPRAGLIRVREFTMKDAYSFHTSQEDLNQYYEKCHK 187

Query: 180 SYLRIFHRLGLKSIPMRA-ESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +Y RIF R G+  +   A +SG +GG LSHEF++L   GE  +    + 
Sbjct: 188 AYERIFERAGIPEVVSVASDSGMMGGSLSHEFMLLTPVGEDSIVLCNEC 236


>gi|255283096|ref|ZP_05347651.1| proline--tRNA ligase [Bryantella formatexigens DSM 14469]
 gi|255266398|gb|EET59603.1| proline--tRNA ligase [Bryantella formatexigens DSM 14469]
          Length = 479

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 79/412 (19%), Positives = 143/412 (34%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   + +P L    L   E    + +  E+  +
Sbjct: 39  GCMVIKPAGYAIWENIQHELDRRFKETGVENVYLPMLIPESLLQKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +   + M   PT E +  D + + I SYR+LP  + Q     R E   R   +RS
Sbjct: 99  THGGLEPLQERMCVRPTSETLFCDFYANDIHSYRDLPKVYNQWCSVMRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++    +M   Y                       D   EF+ 
Sbjct: 158 REFLWQEGHTAHATAEEAEERTIQMLNVY----------------------ADFCEEFLA 195

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        I    +  E++    A  +            
Sbjct: 196 --------------------------IPVIKGRKTDKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FG  ++      +   D    YV   S+G+   R++ A+I   
Sbjct: 219 ESLMHDGKALQSGTSHNFGDGFAKAFGIQYADKDNTLKYVHQTSWGM-TTRMIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ +I I+       D   ++   L+  G  V  DD  +  G +F
Sbjct: 278 GDNSGLVLPPRVAPTQVMVIPIQMQKDGVLDKANEVKTALAAAGLRVKLDDSEKSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  ++ G P+++ +G K +   +  I  R T  +    L E+    +     
Sbjct: 338 SEQEMRGIPVRIELGPKDIEAGQAVIVRRDTREKLVTPLSELPQKTAEVLET 389


>gi|50365293|ref|YP_053718.1| prolyl-tRNA synthetase [Mesoplasma florum L1]
 gi|81827288|sp|Q6F0Y9|SYP_MESFL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|50363849|gb|AAT75834.1| prolyl-tRNA synthetase [Mesoplasma florum L1]
          Length = 473

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 154/413 (37%), Gaps = 68/413 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G    + +   +  +        +  P L    L+  E    + +  E+  +
Sbjct: 35  GTIIFRPYGYAIWELIQKYLDAKFKELEVQNVYFPLLIPQSLFQKEKDHIEGFSPEIATV 94

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D  +       PT E +M + F++ +KSYR+LP  F Q     R E   R  + R+
Sbjct: 95  TRVGDTPLPEPLFIRPTSEVLMANFFKNEVKSYRDLPLIFNQWTNVMRWEKTTRPFL-RT 153

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++     + +     K+  +Y                           EF  
Sbjct: 154 SEFLWQEGHTVHSERKEASDLTLKILDTYT--------------------------EFAQ 187

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A             +   IP + T+ +     +S        Y   S +H+ +      
Sbjct: 188 NA------------LLLPVIPGKKTEKEKFAGADST-------YTIESLMHDGQ------ 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                    ++ G   YF   +S P    F+  +GK  +    S+G+ + R++ A+I + 
Sbjct: 223 --------ALQCGTSHYFADNFSKPYEIKFQNKEGKLEHAYSTSWGV-STRLIGAIIMTH 273

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  V+P ++ LI IK  D+      E I   L      V  D   +  G + 
Sbjct: 274 SDDNGLVLPSMVSPVQVRLIQIKETDE-VIKVTEDIKEALKNK-YRVDIDKTDKSFGFKI 331

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + A++ G PL++ +G + + +++V I  R T  +  +++ EV N         
Sbjct: 332 SEAEIKGIPLRIEIGPRDLENNQVTISRRDTREKIQVNVNEVTNIVDQMIKEY 384


>gi|15806285|ref|NP_294990.1| prolyl-tRNA synthetase [Deinococcus radiodurans R1]
 gi|81858880|sp|Q9RUW4|SYP_DEIRA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|6459012|gb|AAF10837.1|AE001974_2 prolyl-tRNA synthetase [Deinococcus radiodurans R1]
          Length = 499

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/414 (17%), Positives = 145/414 (35%), Gaps = 69/414 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL----AD 98
           P G    +N+   + +    +G   +  PTL   + +  E+   + +  E+  +     +
Sbjct: 56  PYGSALWENIQRWLDDRFKASGHESLIFPTLIPMNFIMKEADHVEGFAPELFTVNKIGTE 115

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
              +  +  PT E ++  ++   + SYR+LPF  YQ    FR ELR     +R+ EF   
Sbjct: 116 ELAEPYVMRPTSETIIGHMWSGWLNSYRDLPFLHYQWGSVFRAELR-TKAFLRTSEFFWH 174

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++       ++    +    Y                          HEF        
Sbjct: 175 EGHTAHADEAEARAEVRQQLDLY--------------------------HEF-------- 200

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
               C        +  E T  +                          +     E     
Sbjct: 201 ----CRDVLALPVVRGEKTASERFAG---------------------AVATYSIEGMMRD 235

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  +S      ++  + K+ +    S+ I + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHYLGQNFSRAFDVKYQTREQKEEFAHTTSWAI-SSRIIGAIIMTHGDDSGL 294

Query: 339 IWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVA 395
           + P  +AP ++ +I +   D         EK+ A L   G  V  D       G ++   
Sbjct: 295 MMPPRIAPIQVVVIPVGRKDNFDQMVQEGEKLAAELRAQGLRVKVDGRDGVTNGFKYNDW 354

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +L G P+++ +G + +    + +K+R +  +E +   E ++  S R       L
Sbjct: 355 ELKGVPVRIELGPRDLESGVLVVKNRHSEDKETLPRAEAVSGMSARLDTIHDFL 408


>gi|325279815|ref|YP_004252357.1| Prolyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
 gi|324311624|gb|ADY32177.1| Prolyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
          Length = 491

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 66/430 (15%), Positives = 152/430 (35%), Gaps = 49/430 (11%)

Query: 24  KLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-V 81
           +L+++ G+  Q   +G     P G    + +   + +   +TG +    P L     +  
Sbjct: 18  ELVVKAGLAEQSVVRGCMVIKPYGYAIWEKIQRQLDDMFKQTGHVNAYFPLLIPKSFFSK 77

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+   + + KE   +                                         + ++
Sbjct: 78  EADHVEGFAKECAVVTHY--------------------------------------RLKN 99

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           +      V+     L ++      +     ++Y     SY  +       +  MR E   
Sbjct: 100 DPNGGGVVVDPAAKLEEEYIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVMRWEMRT 159

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                + EF+     G T     ++ ++           D       V       + +  
Sbjct: 160 RMFLRTAEFL--WQEGHTAHATKEEALEEANKMVRVYA-DFAQNWMAVPVIMGSKSESER 216

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                   ++ E      + ++ G   + G  ++      F  A+GK  YV   S+G+ +
Sbjct: 217 FAGALETFTI-EALMQDGKALQAGTSHFLGQNFAKAFDVQFTNAEGKLEYVWATSWGV-S 274

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCD 378
            R++ A+I +  D  G++ P  +AP ++ ++ I    +  +   +K+     +L   G  
Sbjct: 275 TRLMGALIMAHSDDNGLVLPPKLAPLQVVIVPIYKGAEGLKKISDKVQGLIEKLRAKGIS 334

Query: 379 VFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V +DD   ++ G +FA  +L G P+++ +G + + +  +E+  R T  +E + LE ++ +
Sbjct: 335 VKYDDRDTQKPGWKFADYELKGVPVRLAMGERDLENGTIEVARRDTLTKETLPLEGIVGH 394

Query: 438 ASHRFSNNRP 447
                 + + 
Sbjct: 395 IEKLLEDIQE 404


>gi|169836892|ref|ZP_02870080.1| prolyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 568

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 79/237 (33%), Positives = 135/237 (56%), Gaps = 3/237 (1%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MRR++ F    + +P      + +L++R G I +   G+Y++LPLG K ++N+ +I+REE
Sbjct: 1   MRRTELFTKTNKTSPSGEVSKNAQLLIRAGFIAKEMAGVYAFLPLGLKVVENIKSIVREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            N+ G+ E+ +  LQ  ++W ++ R+ D+      +   ++D  +  G +HEE + ++ R
Sbjct: 61  MNKIGSKELLMTNLQRKEVWEKTNRWNDNIVDIWFKTKLKDDTEVGLGWSHEEPIVNMMR 120

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             I+SY++LP + YQ Q K R+ELR + G+MR REF+MKD YSF  T E  +  Y+K+  
Sbjct: 121 QFIRSYKDLPVSVYQFQNKMRNELRAKSGIMRGREFVMKDMYSFHATKEDLEEYYHKVME 180

Query: 180 SYLRIFHRLGL-KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +Y + + RLG+     +   SG      SHEF  + D GE  ++     M+    +E
Sbjct: 181 AYEQCYRRLGVGDDTYVTFASGGAFTKFSHEFQTVCDAGEDDIYIV-PSMNIAYNAE 236



 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 4/182 (2%)

Query: 261 DVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   +  D  PE     +  R  EVG+IF FG++ +  M   +  + G+   + +GSYG
Sbjct: 389 DIKLVRDGDISPETGEPYIRKRTAEVGNIFNFGSQKTDEMELYYTDSKGEQKSIFLGSYG 448

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R++  + E   D KG++WP  +AP K+ L++I + D       +++Y  +   G +
Sbjct: 449 IGITRIMGVIAEKLSDEKGLVWPVDIAPAKVYLVSIGSGD--AIKEADRLYELMKIKGIE 506

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V +DD   + G +F   +L+G P  V V  + +     E K R TG    ++ +E+ +  
Sbjct: 507 VIYDDRDVRPGEKFTDGELMGIPHMVTVSDRLIKTGNFEHKLRSTGEVSLLTQDELFDTI 566

Query: 439 SH 440
           S 
Sbjct: 567 SQ 568


>gi|323693976|ref|ZP_08108161.1| prolyl-tRNA synthetase [Clostridium symbiosum WAL-14673]
 gi|323501976|gb|EGB17853.1| prolyl-tRNA synthetase [Clostridium symbiosum WAL-14673]
          Length = 477

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 145/410 (35%), Gaps = 68/410 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMVIKPAGYAIWENIQNELDRRFKETGVQNVYMPMFIPESLLEKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +   + M   PT E +  D +   I+SYR+LP  + Q     R E   R   +RS
Sbjct: 99  TMGGLEPLQERMCVRPTSETLFCDFYARDIQSYRDLPRLYNQWCSVVRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++                                                H    
Sbjct: 158 REFLWQEG-----------------------------------------------HTAHA 170

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+  E +     +        E      +    +  E++    A  +            
Sbjct: 171 TAEQAEERTELMLNLY-ADFCEEVLAMPVVRGKKTDKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG  ++      +   D +  YV   S+G+   R++ A+I   
Sbjct: 219 EALMHDGKALQSGTSHNFGDGFAKAFEIQYLDKDNQLKYVHQTSWGM-TTRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ ++ I+ + +   D   ++   LS  G  V  DD  +  G +F
Sbjct: 278 GDDNGLVLPPRIAPVQVMIVPIQQNKEGVLDKAYELKEVLS--GFKVKVDDSDKSPGWKF 335

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + +++ G P++V +G + +++++  +  R T  +  +SL+E+    +   
Sbjct: 336 SESEMRGIPVRVEIGPRDLAENQAVLVRRDTHEKITVSLDEINEKVAELL 385


>gi|295094342|emb|CBK83433.1| prolyl-tRNA synthetase, family I [Coprococcus sp. ART55/1]
          Length = 477

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 154/424 (36%), Gaps = 69/424 (16%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESG 84
           L+ G+I   + KG  +  P G    + +   + E    TG   + +P L    L   E  
Sbjct: 27  LKAGLIAYTNVKGCMAIKPAGYAIWELIQKQLDERFKATGVENVYMPMLIPESLLEKEKD 86

Query: 85  RYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E+  +     +   + M   PT E +  D +++ I+SYR+LP  + Q     R
Sbjct: 87  HVEGFAPEVAWVTYGGLNPLTERMCVRPTSETLFCDFYKNDIQSYRDLPRVYNQWCSVMR 146

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E   R   +RSREFL ++ ++   T E ++    +M   Y                   
Sbjct: 147 WEKETRP-FLRSREFLWQEGHTAHATAEEAEARTIQMLNLY------------------- 186

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                        AD  E  +                    I    +  E++    A  +
Sbjct: 187 -------------ADFCEDVLA----------------MPVIRGRKTEKEKFAGAEATYT 217

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                       E      + ++ G    FG  ++      F   D K  YV   S+G+ 
Sbjct: 218 -----------IEALMHDGKALQSGTSHNFGDGFAKAFGIQFTDKDNKLKYVHQTSWGM- 265

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R++ A+I    D  G++ P  VAP ++ +I I        +   ++  +L      V 
Sbjct: 266 TTRLIGAIIMVHGDNSGLVLPPKVAPTQVMIIPIMQKKAGVLEKAAELREKLGA--FRVK 323

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  +  G +F+  ++ G P++V +G K +  ++  +  R T  +  +SL+E+      
Sbjct: 324 VDDSDKSPGWKFSEQEMRGIPIRVEIGPKDIEANQAVLVRRDTREKITVSLDEIDTKVGE 383

Query: 441 RFSN 444
               
Sbjct: 384 LLET 387


>gi|169621989|ref|XP_001804404.1| hypothetical protein SNOG_14207 [Phaeosphaeria nodorum SN15]
 gi|111057324|gb|EAT78444.1| hypothetical protein SNOG_14207 [Phaeosphaeria nodorum SN15]
          Length = 542

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 84/474 (17%), Positives = 152/474 (32%), Gaps = 94/474 (19%)

Query: 13  ENPRDAEI-----------ASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           E P DA++             H+ + +     +    S G    LP G      + + +R
Sbjct: 52  EAPADAQLNPTTADPPTPPTDHRTLAQVHNLFITSPFSPGSPLILPNGAYVFQKLQSFLR 111

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR------------NDKAMIY 106
            +  + G  E+  P +    LW +SG +++Y ++M  +  R             D+    
Sbjct: 112 AQYPQFGFQEVITPIIYKKSLWEKSGHWENYAEDMFSVQGRGATGQTEKAQVGEDEEFGL 171

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDL 165
            P +      +FR  IKSYR+LP  +       R+E+     G+ R R F   DA+ F  
Sbjct: 172 KPMNCPGHCLLFRDEIKSYRDLPIRYADFSALHRNEVSGSLTGLTRVRRFHQDDAHIFCR 231

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             +       +       +++  GL    +   + P                      + 
Sbjct: 232 PDQILPE-IEQTLKFVGMVYNTFGLGPYKLLLSTRPKDS----------------FIGTI 274

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           +  D      +T  D I S  +I E   A Y    D+    L DS  +  + +   ++  
Sbjct: 275 EEWDRAEKQLSTALDSIGSEWAINEGDGAFYGPKIDII---LKDSNGKEHQTATIQLD-- 329

Query: 286 HIFYFGTKYSLPMSATFKG-------------ADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             F    ++ L   A+ +                     V +     G++    A++   
Sbjct: 330 --FQLPQRFDLQYQASPEELEAGTQTTMDTGLDPSLRRPVMIHRAIYGSIERFMALLIEH 387

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS------------------- 373
           + GK   W        +SL      D   +   E++ A LS                   
Sbjct: 388 YAGKYPFWLSPRPATILSL----NSDANVQAHIERVKAVLSGLQPHDAPSTASSSSPKPL 443

Query: 374 -----KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                 +  DV   D    +G + A A    +   ++VG K   +  V +K   
Sbjct: 444 PLSTIHLPIDVDISDR--SLGKKVAEARSKKYNHMIVVGGKEAENDAVNLKVMN 495


>gi|288870320|ref|ZP_06113698.2| proline--tRNA ligase [Clostridium hathewayi DSM 13479]
 gi|288867624|gb|EFC99922.1| proline--tRNA ligase [Clostridium hathewayi DSM 13479]
          Length = 479

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 145/412 (35%), Gaps = 68/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +       G   + +P      L   E    + +  E+  +
Sbjct: 41  GCMVIKPAGYAIWENIQKELDSRFKTVGVENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 100

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +   + +   PT E +  D +   I SYR+LP  + Q     R E   R   +RS
Sbjct: 101 TYGGLEPLTERLCVRPTSETLFCDFYARDIHSYRDLPKVYNQWCSVVRWEKTTRP-FLRS 159

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++    +M   Y                               
Sbjct: 160 REFLWQEGHTAHATAEDAQARTEQMLNLY------------------------------- 188

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E                E      I    +  E++    A  +            
Sbjct: 189 -ADFCE----------------EVLAMPVIRGQKTDKEKFAGAEATYT-----------I 220

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG  ++      +   + K  YV   S+G+ + R++  +I   
Sbjct: 221 EALMHDGKALQSGTSHNFGDGFAKAFEIQYSDKENKLQYVHQTSWGM-STRLIGGIIMVH 279

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ ++ I+   +   +   +I + LS  G  V  DD  +  G +F
Sbjct: 280 GDDNGLVLPPRIAPVQVMIVPIQQAKEGVLEKAAEIKSVLS--GYRVKVDDTDKSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A +++ G P++V +G K +   +  +  R T  +  +SLEE+          
Sbjct: 338 AESEMRGIPVRVEIGPKDIEAGQAILVRRDTHEKISVSLEEIGQKVGELLDT 389


>gi|295090762|emb|CBK76869.1| prolyl-tRNA synthetase, family I [Clostridium cf. saccharolyticum
           K10]
          Length = 477

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 144/412 (34%), Gaps = 68/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMVIKPDGYAIWENIQKELDRRFKETGVQNVYMPMFIPESLLQKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +   + M   PT E +  D +   I+SYR+LP  + Q     R E   R   +RS
Sbjct: 99  THGGLEPLQERMCVRPTSETLFCDFYARDIQSYRDLPKLYNQWCSVVRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++     M   Y                               
Sbjct: 158 REFLWQEGHTAHATAEEAEERTELMLNLYADFCE-------------------------- 191

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                 E      I    +  E++    A  +            
Sbjct: 192 ----------------------EVLAMPVIRGRKTDKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG  ++      F   D K  YV   S+G+   R++ A+I   
Sbjct: 219 EALMHDGKALQSGTSHNFGDGFAKAFGIQFSDKDNKLKYVHQTSWGM-TTRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ ++ I+   +   D   ++   LS  G  V  DD  +  G +F
Sbjct: 278 GDDSGLVLPPRIAPTQVVIVPIRQQAEGVLDKAYELKDILS--GFSVKVDDSDKSPGWKF 335

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + +++ G P++V +G K +  ++  +  R T  +  +SL+E+    +     
Sbjct: 336 SESEMRGIPVRVEIGPKDLEQNQAVLVRRDTHEKITVSLDEIKEKVTELLDT 387


>gi|167045283|gb|ABZ09941.1| putative anticodon binding domain protein [uncultured marine
           crenarchaeote HF4000_APKG9P22]
          Length = 479

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 69/416 (16%), Positives = 141/416 (33%), Gaps = 69/416 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G+    P G    +++   + ++   TG     +P L    L   E   ++    E+  +
Sbjct: 36  GLIVLRPDGYSIWESIKESLDKKLKETGHRNGFLPVLIPESLLAKEKEHFEGLNPEVFWV 95

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               +  +       PT E +   +F   I+S+R+LP          R E++     +R+
Sbjct: 96  TQSGNSEIGDRLALRPTSETLAYSLFSKWIRSWRDLPLKMNFWNSALRAEIKGTKPFLRT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++                                                H    
Sbjct: 156 SEFLWQEG-----------------------------------------------HTVHA 168

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             D  E +V    +     I  E          +   +   A Y  T +         +P
Sbjct: 169 TKDEAEKEVADILELYKKTIEEELAVPVITGKKSEKDKFVGAVYTDTLE-------SLMP 221

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           + K      +++G   + G  +S P    +   +  + +    S+G+ + R++  +I   
Sbjct: 222 DGK-----ALQMGTSHFLGQNFSKPFDVKYLDENNVETFAWQTSWGV-SWRLIGGMIMIH 275

Query: 333 HDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QI 388
            D KG++ P  VAP ++ +I I       +       +I   LS     V  DD  +   
Sbjct: 276 GDDKGLVLPPKVAPIQVVIIPIYYSNDEKENVLQTACQIKDSLSNNDIRVHLDDREQLTP 335

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +F   ++ G P+++ +G K ++ ++  +  R T  +  + ++ +    S    N
Sbjct: 336 GFKFNDWEMRGIPIRIEIGPKDIAKNQAVLVRRHTQTKTSIEMDSLTEKISSELKN 391


>gi|78778894|ref|YP_397006.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
 gi|114152228|sp|Q31C25|SYP_PROM9 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78712393|gb|ABB49570.1| prolyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
          Length = 600

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 100/241 (41%), Positives = 142/241 (58%), Gaps = 5/241 (2%)

Query: 1   MRRSKYF-LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           MR +  F L  L++ P +AEI SH+L+L+ G I +   GIY+++P+  K ++ ++ II  
Sbjct: 1   MRVTTSFPLGTLRDTPSEAEIISHQLLLKAGYIRRVYSGIYAYMPIMLKVIEKISKIIEI 60

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE---MLRLADRNDKAMIYGPTHEEVMTD 116
           E N  G  ++ +P L  A+LW +S R++ Y      M  L DR  K     PTHEEV+T 
Sbjct: 61  ELNSIGCTKLLLPQLHPANLWKKSERWEGYTAGEGIMFNLKDRQGKEFGLAPTHEEVITS 120

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           I    I SY+ LP  FYQIQ KFRDE+RPRFG+MRSREF+MKD YSF  + +     Y K
Sbjct: 121 IASEIINSYKQLPQCFYQIQTKFRDEIRPRFGLMRSREFIMKDGYSFHSSEKDLASFYEK 180

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           +  +Y  IF   GL+++ + A+SG IGG  S EF+V AD GE  +  ++    +    E 
Sbjct: 181 VGNAYENIFKSCGLETVGVEADSGAIGGASSKEFMVTADAGEDSILFTQSGS-YAANIEK 239

Query: 237 T 237
            
Sbjct: 240 A 240



 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 4/193 (2%)

Query: 252 WTAPYAATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +T+      D+ N K  D +      +    +GIE+GHIF  G KYS  ++A F   DG 
Sbjct: 400 FTSKDYLIEDIRNAKKGDKIKINDNEELKEKKGIEIGHIFQLGQKYSEKLNAKFSDKDGH 459

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              + MG YGIG  R+  A IE +HD KGI WP  ++PF++ +I     DQ+ RD  E+I
Sbjct: 460 LKNLWMGCYGIGVTRIAQAAIEQNHDQKGICWPIQISPFEVIIIPTNLKDQIQRDLTEQI 519

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y        DV  DD  ++ G +F  A+L+G P Q+I+G   + +++VE+  R    +  
Sbjct: 520 YNNFLVNKIDVLLDDREDRAGVKFKDAELIGIPFQIIIGRDSI-NNEVELICRTNNTKFK 578

Query: 429 MSLEEVINYASHR 441
           +S  +++      
Sbjct: 579 ISAHKLLETFISE 591


>gi|323486231|ref|ZP_08091559.1| hypothetical protein HMPREF9474_03310 [Clostridium symbiosum
           WAL-14163]
 gi|323400449|gb|EGA92819.1| hypothetical protein HMPREF9474_03310 [Clostridium symbiosum
           WAL-14163]
          Length = 483

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 145/410 (35%), Gaps = 68/410 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 45  GCMVIKPAGYAIWENIQNELDRRFKETGVQNVYMPMFIPESLLEKEKDHVEGFAPEVAWV 104

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +   + M   PT E +  D +   I+SYR+LP  + Q     R E   R   +RS
Sbjct: 105 TMGGLEPLQERMCVRPTSETLFCDFYARDIQSYRDLPRLYNQWCSVVRWEKTTRP-FLRS 163

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++                                                H    
Sbjct: 164 REFLWQEG-----------------------------------------------HTAHA 176

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+  E +     +        E      +    +  E++    A  +            
Sbjct: 177 TAEQAEERTELMLNLY-ADFCEEVLAMPVVRGKKTDKEKFAGAEATYT-----------I 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG  ++      +   D +  YV   S+G+   R++ A+I   
Sbjct: 225 EALMHDGKALQSGTSHNFGDGFAKAFEIQYLDKDNQLKYVHQTSWGM-TTRLIGAIIMVH 283

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ ++ I+ + +   D   ++   LS  G  V  DD  +  G +F
Sbjct: 284 GDDNGLVLPPRIAPVQVMIVPIQQNKEGVLDKAYELKEVLS--GFKVKVDDSDKSPGWKF 341

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + +++ G P++V +G + +++++  +  R T  +  +SL+E+    +   
Sbjct: 342 SESEMRGIPVRVEIGPRDLAENQAVLVRRDTHEKITVSLDEINEKVAELL 391


>gi|317131365|ref|YP_004090679.1| prolyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315469344|gb|ADU25948.1| prolyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 480

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 68/417 (16%), Positives = 143/417 (34%), Gaps = 67/417 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P      +N+  ++  +   TG   + +P      L   E    + +  E+  +
Sbjct: 41  GCLFIRPYAYAIWENIQKVLDAKFKETGHENVYMPLFIPESLLQKEKDHIEGFAPEVAWV 100

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                ++ ++ +   PT E +  + +   + SYR+LP  + Q     R E   R   +RS
Sbjct: 101 THGGGEKLEERLCVRPTSETLFCEHYSHIVHSYRDLPKLYNQWCSVVRWEKTTRP-FLRS 159

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T   ++    +M   Y                               
Sbjct: 160 LEFLWQEGHTLHETEAEAREETTRMLNIY------------------------------- 188

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E  +                    +    +  E++              +     
Sbjct: 189 -ADFCEQVLA----------------MPVVKGRKTEKEKFAG-----------AVDTCSI 220

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   Y G  ++      + G D    Y    S+G+   R++ A+I   
Sbjct: 221 EAMMHDGKALQSGTSHYLGDGFTHAFDIQYTGRDNTLKYPFQTSWGV-TTRLIGAIIMVH 279

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ ++ +  H     +   ++  RL K    V  D      G +F
Sbjct: 280 GDDSGLVLPPRIAPTQLVIVPVAMHKPGVLEKANELLVRLQKT-LRVKLDASDNSPGWKF 338

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           A  ++ G PL++ +G + +  ++  +  R    + ++SL+E+         +    L
Sbjct: 339 AEYEMKGVPLRLEIGPRDIEQNRCVVVRRDDRQKIEVSLDELETRLPAILDDVHEAL 395


>gi|313237616|emb|CBY12760.1| unnamed protein product [Oikopleura dioica]
          Length = 1692

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 146/433 (33%), Gaps = 76/433 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  +D ++ +   + + + G+I  +   G Y  LP      +++           G    
Sbjct: 1183 EAKKDEDLPTWFQQTITKAGLIEYYDVSGCYVLLPPSYNIWEHIKDFFDMNIKDLGVENC 1242

Query: 70   SVPTLQS-ADLWVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKS 124
              P   S A L  E    + +  E+  +    D  +       PT E VM  I+    +S
Sbjct: 1243 YFPMFVSQAALEKEKEHIEDFAPEVAWVTRSGDTELAEPIAIRPTSETVMYPIYAKRCQS 1302

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T   ++    ++   Y ++
Sbjct: 1303 HRDLPIKMNQWCNVVRWEFKHPTPFLRTREFLWQEGHSAFATKAEAEVEVMQILDLYRKV 1362

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +  L   +                                       +P   T  +    
Sbjct: 1363 YEDLLAIAT--------------------------------------VPGRKTVKEKFA- 1383

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       Y  T + + +            + R I+     + G  +S   + +F+ 
Sbjct: 1384 --------GGDYTTTVEAYIKA-----------AGRAIQGATSHHLGQNFSKMFNISFED 1424

Query: 305  A---DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA----- 356
                 G   +    S+GI   R +  +I    D KG++ P  V+ ++  ++   A     
Sbjct: 1425 ESKGKGIKEFAYQNSWGI-TTRTIGVMIMVHADDKGLVIPPKVSRYQAVIVPCGATKTDE 1483

Query: 357  HDQVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +AC+ +  +L   G     D   ++  G +F   +L G PL++ VG K +  + 
Sbjct: 1484 DKNKLFNACKALENQLKSFGIRAHADLRDDKKPGWKFNDWELKGVPLRIEVGPKDLEANS 1543

Query: 416  VEIKHRLTGIRED 428
                 R T  +  
Sbjct: 1544 AVFVRRDTLEKVT 1556


>gi|225386498|ref|ZP_03756262.1| hypothetical protein CLOSTASPAR_00245 [Clostridium asparagiforme
           DSM 15981]
 gi|225047417|gb|EEG57663.1| hypothetical protein CLOSTASPAR_00245 [Clostridium asparagiforme
           DSM 15981]
          Length = 499

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 144/412 (34%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 59  GCMVIKPAGYAIWENIQNELDRRFKATGVQNVYMPLFIPESLLEKEKDHVEGFAPEVAWV 118

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +   + M   PT E +  D +   I SYR+LP  + Q     R E   R   +RS
Sbjct: 119 THGGLEPLQERMCVRPTSETLFCDFYAKDIHSYRDLPRVYNQWCSVVRWEKTTRP-FLRS 177

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++    +M   Y                               
Sbjct: 178 REFLWQEGHTAHATAEEAEERTIQMLNLYADFCE-------------------------- 211

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                 E      +    +  E++    A  +            
Sbjct: 212 ----------------------EVLAIPVVRGQKTDKEKFAGAEATYT-----------I 238

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FG  ++      F   D    YV   S+G+   R++ A+I   
Sbjct: 239 ESLMHDGKALQSGTSHNFGDGFAKAFEIQFTDKDNTLKYVHQTSWGM-TTRMIGAIIMVH 297

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP +I ++ ++       D   ++  RL++ G  V  DD  +  G +F
Sbjct: 298 GDDNGLVLPPRIAPIQIMVVPVQQQKPGVLDKAFELKERLTRAGFSVKVDDSEKSPGWKF 357

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  ++ G PL+V +G K +  ++  +  R    +  +SL+E+ + A      
Sbjct: 358 ADCEMRGIPLRVEIGPKDMEKNQAVLVRRDNHEKTFISLDELESKAGEMLDT 409


>gi|20094665|ref|NP_614512.1| prolyl-tRNA synthetase [Methanopyrus kandleri AV19]
 gi|74580679|sp|Q8TW09|SYP_METKA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|19887826|gb|AAM02442.1| Prolyl-tRNA synthetase [Methanopyrus kandleri AV19]
          Length = 485

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 160/449 (35%), Gaps = 80/449 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++  +L    R AEI   +  ++         G+Y WLP G +    V   +R +  
Sbjct: 21  FSEWYAEVL----RSAEIMDVRYPVK---------GMYVWLPYGFEIRQRVVEKLRRKLR 67

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
            TG  E+  PTL     L  ES     +  E+  +        D+ +   PT E  +  +
Sbjct: 68  ETGHEEVLFPTLIPETQLKKESEHIAGFEDEVYWVTHGGLKELDEKLALRPTSETAIYPM 127

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I+S+ +LP   +QI   FR E +                      P          
Sbjct: 128 FALWIRSHADLPLKIFQIVNTFRYETK-------------------HTRPLIRMREITTF 168

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             ++         +     A    I      E                            
Sbjct: 169 KEAHTAHATEEEAEEQVKEA--VEIYSSFFDEL--------------------------- 199

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               I  + S+  +W     A   V  + L    P+      R +++G +   G  ++  
Sbjct: 200 ---GIPYIASVRPEWDKFPGAEYTVAFDTLM---PDG-----RTLQIGTVHMLGQNFART 248

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              T++  +G   YV M  YGI + RVVA++I    D +G++ P  VAP+++ ++ I   
Sbjct: 249 FEVTYETEEGDQEYVYMTCYGI-SDRVVASMIAIHGDERGLVLPPDVAPYQVVMVPILKK 307

Query: 358 D--QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   +   ++   L + G  V  DD     G +F   +L G PL++ +G++ + +  
Sbjct: 308 GVRRKILERAAEVEEMLREEGVRVKVDDRDMSPGRKFHYWELKGVPLRIELGARELEEGT 367

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSN 444
             +  R    RE  + EE+ +       +
Sbjct: 368 AVVFRRDELERETYAFEELPDVVPELLED 396


>gi|60416072|gb|AAH90718.1| Zgc:92586 protein [Danio rerio]
          Length = 359

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 131/385 (34%), Gaps = 37/385 (9%)

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++ LW  SG +  Y + M       +      P +      +F    
Sbjct: 2   KRGFQEVVTPNIYNSKLWQTSGHWQHYSENMFSFEVEKEI-FALKPMNCPGHCLMFDHRP 60

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +S+R LP       +  R+EL     G+ R R F   DA+ F    +             
Sbjct: 61  RSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCSMDQIESE-IKGCLDFL 119

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             ++   G                    F +   T   +     +  D          +D
Sbjct: 120 RTVYDVFGFT------------------FKLNLSTRPEKFLGEPEVWDQAEKQLENSLND 161

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 +     A Y    D+   ++ D++    + +   ++    F    +++L   + 
Sbjct: 162 FGEKWVLNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRFNLTFVSH 214

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               D K   V +    +G++  + A++    +  G  WP  ++P ++ ++ I      C
Sbjct: 215 --DGDDKKRPVIIHRAILGSVERMIAILT---ENYGGKWPLWLSPRQVMVVPIGP---TC 266

Query: 362 RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +  +++     KVG     D D G  +  +   A L  +   ++VG K  S   V ++ 
Sbjct: 267 DEYAQRVQKEFHKVGLMTDVDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKSSDTVNVRT 326

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R   +  + SL + +       ++ 
Sbjct: 327 RDNKVHGERSLTDCMERLKQLKASR 351


>gi|325969359|ref|YP_004245551.1| prolyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
 gi|323708562|gb|ADY02049.1| prolyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
          Length = 510

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 75/413 (18%), Positives = 134/413 (32%), Gaps = 66/413 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G Y W P G K    V   +R   + TG  E+  P     + L  ES     +  E+  +
Sbjct: 64  GAYVWRPYGMKIRRLVETYVRFLHDETGHQEVLFPVFIPYEFLAKESEHIRGFESEVFWV 123

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           +                                            E         +    
Sbjct: 124 SKGGANE--------------------------------------ERLVLRPTSETAMMP 145

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           M   +  D T    +               R  ++               +H      + 
Sbjct: 146 MFKLWIKDHTDLPFRVYQIVSVFRAETKATRPMIRLR------EISMFKEAHTAHADRED 199

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLN--SIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            E QV          +      FD +      +   +W     A   +  + +    P+ 
Sbjct: 200 AERQVR-------EAVEIYKKIFDYLGIPYLINQRPEWDKFAGAVYTMAFDTVM---PDG 249

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K      +++G + Y GT +S      +   +G   YV   SYGI + RV+AA+I    D
Sbjct: 250 K-----TMQIGTVHYLGTNFSKVFDVKYLTPNGDWDYVHTTSYGI-SERVIAAMIAMHGD 303

Query: 335 GKGIIWPDSVAPFKISLINIKAH--DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQ 391
            KG++ P +VAP ++ +I I     +++       I   LS VG  V  DD      G +
Sbjct: 304 DKGLVLPPNVAPIQVIIIPIMYKGTEEIILRETRSIQEELSNVGIRVKIDDRTDRTPGWK 363

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +   ++LG PL++ +G K + + +V +  R T  +     + +++      + 
Sbjct: 364 YNYWEMLGVPLRIEIGPKDIENRQVVLARRDTLEKYVAPRDGIVDTVRELLNT 416


>gi|312885526|ref|ZP_07745164.1| prolyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603]
 gi|311301994|gb|EFQ79025.1| prolyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603]
          Length = 490

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 152/427 (35%), Gaps = 83/427 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + + +++ +    TG      P       +  E+   + + KE   +
Sbjct: 33  GCMVIKPYGYSIWEKMQSVLDQMFKDTGHSNAYFPLFIPKSFFSKEASHVEGFAKECAVV 92

Query: 97  AD-----------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                              + ++ +I  PT E ++ + +R  I+SYR+LP    Q     
Sbjct: 93  THYRLKNDGEGNIIVDETAKLEEELIVRPTSETIIWNTYRGWIQSYRDLPLLINQWANVV 152

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E+R R  + R+ EFL ++ ++   T E +     +M                      
Sbjct: 153 RWEMRTRLFL-RTTEFLWQEGHTAHATAEEAIAETEQML--------------------- 190

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                       V AD  E  +                    +    +  E++       
Sbjct: 191 -----------HVYADFAENWLA----------------LPVVRGRKTANERFAG----- 218

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  L     E      + ++ G   + G  ++      F   +GK  +V   S+G+
Sbjct: 219 ------ALDTYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFTSKEGKQEFVWATSWGV 272

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVG 376
            + R++ A++ +  D  G++ P  +AP ++ ++ I   ++      +  + +   L    
Sbjct: 273 -STRLMGALVMAHSDDSGLVLPPKLAPIQVVIVPIFRSEEELAQISEVADALSKALKAKN 331

Query: 377 CDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V +D+   ++ G +FA  +L G PL+V +G + +++  VE+  R T  +E +  + + 
Sbjct: 332 IRVKYDNRDTQRPGFKFAEYELKGIPLRVAIGGRDLANGTVELARRDTKTKETVQQQGLA 391

Query: 436 NYASHRF 442
                  
Sbjct: 392 EQIEQLL 398


>gi|320164647|gb|EFW41546.1| glutamyl-prolyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 1526

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/424 (16%), Positives = 131/424 (30%), Gaps = 75/424 (17%)

Query: 27   LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESG 84
            +R  MI  +   G Y   P      D++      E    G      P   S   L  E+ 
Sbjct: 1048 VRAEMIEYYDISGCYILRPWACSVWDHIRDFFDREIKLLGVENAYFPMFVSKSALEKEAD 1107

Query: 85   RYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
                +  E+  +       +       PT E +M   F   I+S+R+LP    Q     R
Sbjct: 1108 HIADFAPEVAWVTKSGQSDLAEPIALRPTSETIMYPSFAKWIRSHRDLPLKINQWANVVR 1167

Query: 141  DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
             E +     +R+REFL ++ ++   T   +     ++   Y                   
Sbjct: 1168 WEFKNPTPFLRTREFLWQEGHTAYETKPEADKEVLQILELY------------------- 1208

Query: 201  PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAAT 259
                 +  E++                              I    S  E++    Y  T
Sbjct: 1209 ---RRVYEEYLA--------------------------VPVIKGKKSEKEKFAGGLYTTT 1239

Query: 260  SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
             +                + RG++       G  +S       +  D       +     
Sbjct: 1240 VEAIIPS-----------TGRGVQGATSHNLGQNFSKMFDILIEDNDRPGQKKHVWQNSW 1288

Query: 320  G-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYAR 371
            G   R +  +I    D KG++ P  VA  +  ++          A         +++   
Sbjct: 1289 GLTTRTIGVMIMLHGDNKGLVLPPRVASLQAVIVPCGITASLSEADRAALMAYGKQVEDA 1348

Query: 372  LSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G  V +DD      G +F   +L G PL++ VG + + + ++    R TG +   S
Sbjct: 1349 LRAGGIRVKFDDRDNYTPGYKFNHWELRGVPLRIEVGPRDMKNKQIVAVRRDTGEKTSHS 1408

Query: 431  LEEV 434
            ++ +
Sbjct: 1409 VDNI 1412


>gi|298675789|ref|YP_003727539.1| prolyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
 gi|298288777|gb|ADI74743.1| prolyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
          Length = 479

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 88/424 (20%), Positives = 165/424 (38%), Gaps = 71/424 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG+Y W P G        +IIRE  +R    E   P L    +   E+     + 
Sbjct: 31  VRYPVKGLYVWNPFGFSIRKKTYSIIRELLDR-DHEETLFPLLIPENEFMKETKHIKGFE 89

Query: 91  KEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           +E+  +        +  +   PT E  +  I++  ++S+ +LP  +YQI   FR E +  
Sbjct: 90  EEVYWVTHGGTSPLEVNLALRPTSETAIYPIYKLWVRSHADLPIKYYQIVNTFRYETKHT 149

Query: 147 FGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             ++R RE    K+A++   T E +    ++                            D
Sbjct: 150 RPLIRLREITSFKEAHTVHETWEDAAAQVDEAI--------------------------D 183

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             HEF         +  C                  +  L S   +W     A   +  +
Sbjct: 184 RYHEF--------YERLC------------------LPVLTSKRPEWDKFPGADYTIAVD 217

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            L    P+      R ++VG   + G  ++      ++  +G+  Y     YGI + R +
Sbjct: 218 ALM---PDG-----RTLQVGTAHHLGNNFAKTFDIEYEDPNGEQVYAYQSCYGI-SERCI 268

Query: 326 AAVIESSHDGKGIIWPDSVAPFK---ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           AA+I    D KG+I P  +AP +   I +I      +   DAC+ +   L   G     D
Sbjct: 269 AAMISVHGDDKGLILPPEIAPVQVIIIPIIFKNKDKESILDACKNVKGSLESAGVKTKID 328

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + G+++   ++ G PL++ +G K + +  V +  R TG +E ++++E+ +  + +F
Sbjct: 329 TSDRRPGAKYYRWEMKGVPLRIEIGPKDLKNESVMMVRRDTGDKEQIAMDEINDTVASKF 388

Query: 443 SNNR 446
            + +
Sbjct: 389 ESIK 392


>gi|195054655|ref|XP_001994240.1| GH23578 [Drosophila grimshawi]
 gi|193896110|gb|EDV94976.1| GH23578 [Drosophila grimshawi]
          Length = 1706

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/422 (16%), Positives = 133/422 (31%), Gaps = 73/422 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
             G Y   P       ++      E  R+G  E   P   S A L  E      +  E+  
Sbjct: 1237 SGCYILRPWSYAIWKSIRNWFDAEITRSGVKECYFPIFVSKAALEREKSHIADFSPEVAW 1296

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    +  +       PT E  M   +   ++SYR+LP    Q     R E +     +R
Sbjct: 1297 VTKSGESDLAEPIAIRPTSETGMYPAYAKWVQSYRDLPIRLNQWNNVVRWEFKHPQPFLR 1356

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S       ++                                        
Sbjct: 1357 TREFLWQEGHSAFANKSEAE---------------------------------------- 1376

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
              A+  E     ++ + D            +    +  E++    Y  T +         
Sbjct: 1377 --AEVLEMLELYAQVYTDLLA------IPVVKGRKTEKEKFAGGNYTTTVEAFISA---- 1424

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                   S R I+     + G  +S      ++  + +       +      R +  +I 
Sbjct: 1425 -------SGRAIQGATSHHLGQNFSKMFDIVYEDPETQQKQFVYQNSWGITTRTIGVMIM 1477

Query: 331  SSHDGKGIIWPDSVAPFKISLIN----IKAHDQVCRD---ACEKIYARLSKVGCDVFWDD 383
               D +G++ P  VA  +  ++     +   D+       AC++I   LS+ G     D 
Sbjct: 1478 VHADNQGLVLPPHVACTQAIVVPCGITVNTKDEERAQLLGACKEIVKNLSRAGVRCEGDY 1537

Query: 384  MGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
                  G +F   +L G P+++ +G K +   ++    R TG +  ++L++V        
Sbjct: 1538 RDNYSPGWKFNHWELKGVPIRIELGPKDMQAKQIVAVRRDTGEKMTIALDDVEKKIPALL 1597

Query: 443  SN 444
              
Sbjct: 1598 ET 1599


>gi|325188965|emb|CCA23493.1| prolyltRNA synthetase putative [Albugo laibachii Nc14]
          Length = 620

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 89/269 (33%), Positives = 140/269 (52%), Gaps = 4/269 (1%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           S+ ++P L+  P +A + S++L+LR G I +   G ++ LPL  + L  +  II  E  +
Sbjct: 19  SRVWIPTLKAAPIEAAVPSYQLLLRAGFIRKSGHGTFAMLPLATRVLQKLEDIIDTEMEK 78

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
               +  +P + S+DLW  S R+ S   E+    DR +   I  PTHEE MT +   H  
Sbjct: 79  INGNKCDLPAIVSSDLWKLSDRWRSRTSELFTFRDRRNNEQILAPTHEEPMTALVAQHHN 138

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           S  +     YQI  K+RDE+RPRFG++R+REF+MKD YSFD     +  +Y+ +  SY R
Sbjct: 139 S-THESLRLYQIGKKYRDEVRPRFGLLRAREFIMKDMYSFDTNYSNAVTTYDAVIGSYKR 197

Query: 184 IFHRL-GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD--FPIPSENTDFD 240
           I  ++  L  + ++A++G IGG+ SHEF VLA  GE  +       +      S   + +
Sbjct: 198 ILQQILRLPVVQVQADTGDIGGNFSHEFHVLASVGEDGILSCSGTPNSTNKECSYAANVE 257

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               L    ++  A    + D+ N  + D
Sbjct: 258 KAQGLLYEPKEKNAGILQSGDLRNSAVKD 286



 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 19/237 (8%)

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
               +   I +   + +D  +L S +      Y    +   E +     E    ++RGIE
Sbjct: 387 PSHSLHEAIQAAQVEPNDGKTLESSLSISIGNYRLAEE---EDICPHCKEGLLKASRGIE 443

Query: 284 VGHIFYFGTKYSLPMSA---TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           V H FY G +YS  M+A               +MG +G+G  R++AA++E+SHD  GI W
Sbjct: 444 VAHAFYLGQRYSNSMNALHSRISEGSVVKEPYEMGCFGLGVSRLLAAIVETSHDKNGIQW 503

Query: 341 PDSVAPFKISLINIKAH--DQVCRDACEKIYARLSKVGC----------DVFWDDM-GEQ 387
           P  +AP+ I ++ I A   D        KI A+LS++             V  DD     
Sbjct: 504 PGVIAPYHIIVLAIGATCVDHPLAIGANKIAAQLSQMPFVASSTLSGSVHVILDDRWQTS 563

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            G +   ++L+G+P +V++G ++ +   VE+++RLT  +  +  EE+  Y   +F+ 
Sbjct: 564 AGVKLVESELIGYPYRVVIGKQYATARLVEVQNRLTMEKTFIKPEELPAYFEDQFAE 620


>gi|313679172|ref|YP_004056911.1| prolyl-tRNA synthetase [Oceanithermus profundus DSM 14977]
 gi|313151887|gb|ADR35738.1| prolyl-tRNA synthetase [Oceanithermus profundus DSM 14977]
          Length = 478

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 149/414 (35%), Gaps = 69/414 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG      P       L  E+   + +  E+  +
Sbjct: 35  GTMVMRPYGYALWENLQRELDRMIKETGHENAYFPLFIPMSFLQKEAEHVEGFAPELAVV 94

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E V+  ++   I S+R+LP    Q     R E RPR  + R+
Sbjct: 95  THAGGEELEEPLAVRPTSETVIGYMWSKWISSWRDLPVLMNQWANVVRWEKRPRPFL-RT 153

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M   Y ++        +                   
Sbjct: 154 TEFLWQEGHTAHATREEAEEETRRMLGVYAQLARDYAAIPVWE----------------- 196

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                           + +  E++      T+            
Sbjct: 197 -------------------------------GMKTEKEKFAGAVYTTT-----------I 214

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   + G  ++     TF+  D ++ YV   S+G+ + R++ A+I + 
Sbjct: 215 EAMMRDGKALQAGTSHFLGQNFARAFEITFQDQDLEEKYVWTTSWGL-STRMIGAIIMAH 273

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGE-QIG 389
            D +G+I P  +AP ++ ++ I   +  +V  +A  ++   +   G  V  DD  +   G
Sbjct: 274 GDDQGLILPPRLAPIQVVVVPIYRKNTREVVLEAARELVREIRAAGVRVHLDDRDQYSPG 333

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +F   +L G PL++ +G + V      +K RL G +E + L ++      R  
Sbjct: 334 YKFNEWELKGVPLRIEIGPRDVEAGHAVLKSRLGGEKEFIGLRDLPGLLPERLE 387


>gi|315282168|ref|ZP_07870635.1| prolyl-tRNA synthetase [Listeria marthii FSL S4-120]
 gi|313614185|gb|EFR87862.1| prolyl-tRNA synthetase [Listeria marthii FSL S4-120]
          Length = 252

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/180 (35%), Positives = 99/180 (55%), Gaps = 3/180 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF   TKYS  M+AT    +G+   + MG YG
Sbjct: 67  DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLRTKYSQAMNATILDENGRAQPIIMGCYG 126

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R+++A+ E S+D  G +W   ++PF + LI +    +      E +Y  L   G  
Sbjct: 127 IGVSRILSAIAEQSNDENGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYTSLQGAGFS 186

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K R TG   ++  +E++N  
Sbjct: 187 VLIDDRAERAGVKFADADLIGLPIRITVGKK-AAEGVVEVKIRKTGEMIEVRQDELLNTL 245


>gi|15669423|ref|NP_248233.1| prolyl-tRNA synthetase [Methanocaldococcus jannaschii DSM 2661]
 gi|2501043|sp|Q58635|SYP_METJA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|1591870|gb|AAB99242.1| prolyl-tRNA synthetase (proS) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 455

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 91/453 (20%), Positives = 164/453 (36%), Gaps = 85/453 (18%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+++  IL++    AEI   +  ++         G   +LP G K       IIR  
Sbjct: 1   MEFSEWYSDILEK----AEIYDVRYPIK---------GCGVYLPYGFKIRRYTFEIIRNL 47

Query: 61  QNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMT 115
            + +G  E   P L   DL   E+     +  E+  +      + D  +   PT E  + 
Sbjct: 48  LDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIY 107

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
            + +  +K + +LP   YQI   FR E +    ++R RE                     
Sbjct: 108 YMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREI-------------------- 147

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                                     +    +H      +  E QV          I   
Sbjct: 148 --------------------------MTFKEAHTAHSTKEEAENQV-------KEAISIY 174

Query: 236 NTDFDDIISLN--SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
              FD +      S   +W     A   +  + +F   P+      R +++  +   G  
Sbjct: 175 KKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIF---PDG-----RTMQIATVHNLGQN 226

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +S      F+   G   Y     YGI + RV+A++I    D KG+I P  VAP ++ ++ 
Sbjct: 227 FSKTFEIIFETPTGDKDYAYQTCYGI-SDRVIASIIAIHGDEKGLILPPIVAPIQVVIVP 285

Query: 354 I--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +  K  + +  +  ++IY +L      V  DD   + G +F   ++ G PL++ VG K +
Sbjct: 286 LIFKGKEDIVMEKAKEIYEKLKGK-FRVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPKDI 344

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + K+ +  R T  +  +   +++       +N
Sbjct: 345 ENKKITLFRRDTMEKFQVDETQLMEVVEKTLNN 377


>gi|167747292|ref|ZP_02419419.1| hypothetical protein ANACAC_02006 [Anaerostipes caccae DSM 14662]
 gi|167653270|gb|EDR97399.1| hypothetical protein ANACAC_02006 [Anaerostipes caccae DSM 14662]
          Length = 478

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 150/422 (35%), Gaps = 68/422 (16%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGR 85
           +  +I   S KG     P G    +N+  ++  +   TG   +++P      L   E   
Sbjct: 28  KAELIEYSSVKGCMILRPNGYAIWENIQKVMDAKFKETGVENVAMPMFIPESLLEREKDH 87

Query: 86  YDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +      + ++ +   PT E +  D + + I+SYR+LP  + Q     R 
Sbjct: 88  VEGFAPEVAWVTHGGNKKLEERLCVRPTSETLFCDFYSNIIQSYRDLPKLYNQWVSVVRW 147

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E   R  +  S                                      +       +  
Sbjct: 148 EKSTRPFLRTS--------------------------------------EFYWQEGHTAH 169

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
              D + E  V         FC +      +  + T+ +     N       A Y   + 
Sbjct: 170 ATADEAEERTVQM-LNMYADFCEQYLAIPVVKGQKTEKEKFAGAN-------ATYTIEAL 221

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
           +H+               + ++ G    FG  ++      +   + K  YV   S+G+ +
Sbjct: 222 MHD--------------GKALQSGTSHNFGDGFAKAFDIQYTDKNNKLQYVHQTSWGM-S 266

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++ A+I    D  G++ P  +AP +  ++ I    +   +  E+I   LSK    V  
Sbjct: 267 TRIIGAIIMVHGDDSGLVLPPKIAPVQTMIVPIMQKKEGVLEKAEEIRECLSK-NYKVKV 325

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  +  G +F+  ++ G P ++ +G K +  ++  I  R T  +  +SL+E+ +  S  
Sbjct: 326 DDSDKSPGWKFSEQEVQGIPTRIEIGPKDIEKNQAVIVRRDTREKIFVSLDEIESKLSEV 385

Query: 442 FS 443
             
Sbjct: 386 LD 387


>gi|153877657|ref|ZP_02004322.1| Prolyl-tRNA synthetase [Beggiatoa sp. PS]
 gi|152065879|gb|EDN65678.1| Prolyl-tRNA synthetase [Beggiatoa sp. PS]
          Length = 183

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/174 (39%), Positives = 94/174 (54%), Gaps = 1/174 (0%)

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                  ARGIEVGHIF  G KYS  M A      GK   + MG YGIG  R+VAA IE 
Sbjct: 10  GNGILAIARGIEVGHIFQLGQKYSQAMQANVLDEQGKSVILTMGCYGIGVSRLVAAAIEQ 69

Query: 332 SHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +HD  GIIWP S+APF + L+ +     Q  R+A E +Y +L   G DV +DD  E+ G 
Sbjct: 70  NHDEHGIIWPQSIAPFSVILLPMSMHKSQRLREAAEAMYNQLQSAGIDVLFDDRRERAGV 129

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            FA ADL+G P ++++G   +   ++E K R       + + E +++   +  N
Sbjct: 130 MFANADLIGIPHRLVIGESGLDKGEIEYKGRRDQKAHSIPMAEAVSFIQTQLQN 183


>gi|119719726|ref|YP_920221.1| prolyl-tRNA synthetase [Thermofilum pendens Hrk 5]
 gi|152112960|sp|A1RYD8|SYP_THEPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119524846|gb|ABL78218.1| prolyl-tRNA synthetase [Thermofilum pendens Hrk 5]
          Length = 482

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/429 (19%), Positives = 166/429 (38%), Gaps = 71/429 (16%)

Query: 24  KLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW- 80
           +++ + G++    + +G     P   + +  +     EE  +TG   +  P +   + + 
Sbjct: 20  QVLSKAGLVDLRYNVQGFVVHKPWLMRIIKAIYRFFEEELEKTGHEPVLFPLVIPEENFE 79

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +     ++ ++ +   PT E     ++   I+S+R+LP   YQ  
Sbjct: 80  KEKEHVEGFKPEVFWVTQAGDEKLERRLALRPTSETAFYYMYSYWIQSWRDLPLKLYQSV 139

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             +R+E   R  ++R REFL  +A+    T E + +   +   +                
Sbjct: 140 SVYRNEKNTRP-LIRGREFLWIEAHDAFATHEEALNQIREDMEN---------------- 182

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                    +  E +     G   +F  +   D    +E+T   D I  +  V       
Sbjct: 183 ------SRKVIWEKL-----GIPFLFLRRPPWDKFSGAEDTYAADTIMPDGRV------- 224

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                                    +++      G +++   + TF   DGK  YV    
Sbjct: 225 -------------------------LQISSTHDLGQRFAKAFNVTFLDKDGKRKYVWQTC 259

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLS 373
           YG G  R+ AA+I    D KG++ P +VAP ++ ++ I       +   + C K+ A + 
Sbjct: 260 YGPGIWRITAALIAIHGDDKGLVLPMNVAPIQVVIVPIYYKESDKERVLEKCRKLEAMIR 319

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           + G  V+ D   E   G +F   +L G P+++ VG + V    V +  R   ++E ++  
Sbjct: 320 EAGYRVYLDAREEYTPGWKFNDWELKGVPVRLEVGVREVETGTVTVFRRDLRVKEKVADS 379

Query: 433 EVINYASHR 441
           E+I++    
Sbjct: 380 ELISHIRKL 388


>gi|212531825|ref|XP_002146069.1| threonyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
 gi|210071433|gb|EEA25522.1| threonyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
          Length = 541

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 131/441 (29%), Gaps = 70/441 (15%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
            D  I      L T     +S G   +LP G   ++ +   +R +  + G  E+  P + 
Sbjct: 72  ADHRILGTAQELFT--SSPYSPGSPLFLPNGTHIINKLIGFLRAQYRQYGFREVLTPNIY 129

Query: 76  SADLWVESGRYDSYGKEMLRLADR-----------NDKAMIYGPTHEEVMTDIFRSHIKS 124
              LW  SG + +Y  +M  +  R            D+     P +      +F+S   S
Sbjct: 130 KKSLWEISGHWQNYKDDMYEVRGRGATGETEGELGEDEQYGLKPMNCPGHCLLFKSQNHS 189

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  +       R+E+     G+ R R F   D + F    +  K   +        
Sbjct: 190 YRDLPVRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIFCRPQQIGKE-IDLALTFVNM 248

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    GL    +   + P                E     S +  D          D   
Sbjct: 249 VMKTFGLPKYNLVLSTRP----------------EKDFIGSLELWDSAEEQLRQALDKSG 292

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSAT 301
               + E   A Y    D+   +L DS  +  ++S   +++     F    + +      
Sbjct: 293 LPWELNEGDGAFYGPKIDI---QLQDSDGKYHQLSTIQLDLNLPQRFELEYQVAEGEPDY 349

Query: 302 FKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                GK   V +     G+  R +A +IE                           D+ 
Sbjct: 350 DPNTPGKATPVLIHRAIFGSLERFLALLIERYAGRWPFWLSPRQGIILTVQ-----SDEP 404

Query: 361 CRDACEKIYARLSKVGCDVF--------------------------WDDMGEQIGSQFAV 394
                E+  A+ S  G D                             D     +  +   
Sbjct: 405 VLRLAEEAAAKFS--GYDTIIPRLHSEDAELQQPAPLTSEPTFLIDIDSSSRSLSKKIQR 462

Query: 395 ADLLGFPLQVIVGSKFVSDSK 415
           A  + + L  +VGSK ++D  
Sbjct: 463 AKSMKYNLIFVVGSKNLADKT 483


>gi|226324133|ref|ZP_03799651.1| hypothetical protein COPCOM_01911 [Coprococcus comes ATCC 27758]
 gi|225207682|gb|EEG90036.1| hypothetical protein COPCOM_01911 [Coprococcus comes ATCC 27758]
          Length = 481

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/408 (15%), Positives = 136/408 (33%), Gaps = 58/408 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  ++LP G    + + A + +    TG   + +P L   +L   ES   + +  E+   
Sbjct: 39  GCLNYLPNGYAIWEKIQADLDKRFKETGVENVYLPMLIPENLLQKESDHIEGFAPEV--- 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                             +      E L
Sbjct: 96  -------------------------------------------------AWVTKGGLETL 106

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +       +       + +   SY  +          +R E        S EF+     
Sbjct: 107 QEPMCIRPTSETLFCDLWARTVQSYRDLPKVWNQWCSVLRWEKTTRPFLRSREFLWQ--- 163

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
               +  + +  +    +    + ++I  +  +   + P   +      +   ++ E   
Sbjct: 164 EGHTIHATYEEAEQRTLTMLRVYQELIRDSLAIPFVSGPKTESEKFAGAQDTYTV-EALM 222

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     +FG  +       +   + + H V   S+G+ + R++ A+I    D  
Sbjct: 223 HDGKALQSATSHFFGNAFPDAFDIKYLDKNNELHSVYETSWGL-STRIIGALIMVHGDDS 281

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G++ P  +AP +  +I I  H +   +   ++  RL K G  V  DD  +  G +F+  +
Sbjct: 282 GLVLPPRIAPVQTRVIPIAQHKEGVLEKANELTERLKKAGYSVKIDDSEKSPGWKFSEQE 341

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +LG P ++ +G K +  ++V +  R T  +  +SL+E+          
Sbjct: 342 MLGIPTRIEIGPKDIEQNQVVVVRRDTREKIVVSLDEIETKLGEILET 389


>gi|326802012|ref|YP_004319831.1| prolyl-tRNA synthetase [Sphingobacterium sp. 21]
 gi|326552776|gb|ADZ81161.1| Prolyl-tRNA synthetase [Sphingobacterium sp. 21]
          Length = 490

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 153/427 (35%), Gaps = 83/427 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + + A + +    TG      P       +  E+   + +  E   +
Sbjct: 33  GCMVIKPYGYAIWEKMQAALDQMFKDTGHSNAYFPLFIPKSFFSKEASHVEGFATECAVV 92

Query: 97  AD-----------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                              + ++ +I  PT E ++ + ++  I+SYR+LP    Q     
Sbjct: 93  THYRLKNDGNGQIIVDEEAKLEEELIVRPTSETIIWNTYKGWIQSYRDLPILVNQWANVV 152

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E+R R  + R+ EFL ++ ++   T E +     +M                      
Sbjct: 153 RWEMRTRLFL-RTAEFLWQEGHTAHATSEEAVKETERMLN-------------------- 191

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                V+ +       +P        +    +  E++       
Sbjct: 192 ---------------------VYATFAEEWMALPV-------VRGRKTENERFAG----- 218

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  L     E      + ++ G   + G  ++      F   +GK  YV   S+G+
Sbjct: 219 ------ALDTYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFTSKEGKLDYVWATSWGV 272

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVG 376
            + R++ A+I +  D  G++ P  +AP ++ ++ I   ++  R      + + A+L + G
Sbjct: 273 -STRLMGALIMAHSDDAGLVLPPKLAPIQVVIVPIYKTEEESRQIGALADNLIAQLKQKG 331

Query: 377 CDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V +DD   ++ G +FA  +L G P++V +G++ + +  VE+  R T  +E +    + 
Sbjct: 332 ISVKYDDRDTQRPGFKFAEWELKGVPVRVAIGARDLQNGTVELARRDTQSKETVPQTGLA 391

Query: 436 NYASHRF 442
                  
Sbjct: 392 EAIEQLL 398


>gi|229056233|ref|ZP_04195655.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH603]
 gi|229165394|ref|ZP_04293179.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH621]
 gi|228618078|gb|EEK75118.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH621]
 gi|228721106|gb|EEL72643.1| Prolyl-tRNA synthetase 2 [Bacillus cereus AH603]
          Length = 476

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/414 (17%), Positives = 146/414 (35%), Gaps = 71/414 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   +G   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKESGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL                                                    E   
Sbjct: 156 TEFL--------------------------------------------------WQEGHT 165

Query: 213 LADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           + +T E     + + ++       E      I    +  E++    A  +          
Sbjct: 166 IHETAEESQIETLNILNLYAAFCEEYLAIPVIKGQKTEKEKFAGAKATYT---------- 215

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             E+     + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I 
Sbjct: 216 -IESLMHDGKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIM 273

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              D  G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  G 
Sbjct: 274 VHSDNNGLVMPPKVAPLQVVIVPIAQHKEGVLEKATELQGRIQKV-ARVKIDASNKTPGW 332

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +F   ++ G P+++ VG K +  ++V +  R T  +E ++++++          
Sbjct: 333 KFNEYEMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKEFIAMDQLEERIPSLLEE 386


>gi|327401992|ref|YP_004342831.1| Prolyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
 gi|327317500|gb|AEA48116.1| Prolyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
          Length = 482

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 94/421 (22%), Positives = 162/421 (38%), Gaps = 73/421 (17%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           I    KG+Y W P G K    V   +RE  +R    E+  P L    +L  E      + 
Sbjct: 31  IRYPVKGLYVWYPFGFKIRQLVYGKLREIMDR-DHDEVYFPALIPETELGREGEHIKGFE 89

Query: 91  KEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            E+  +        D  +   PT E  M  +F+  I+S+ +LP   YQI   FR E +  
Sbjct: 90  DEVYWVTHGGLTPLDVKLALRPTSETAMYPMFKLWIRSHADLPLKVYQIVNTFRYETKHT 149

Query: 147 FGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             ++R RE    K+A++   T E ++    K    Y   +  L +               
Sbjct: 150 RPLIRLREITSFKEAHTVHRTFEEAEEQVRKAVGYYKEFYDFLAIPY------------- 196

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                                                  L     +W     A   +  +
Sbjct: 197 ---------------------------------------LVIRRPEWDKFPGAAYTIAFD 217

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            +    P+      R +++G + + G  ++     T++  DG+  +     YGI + R +
Sbjct: 218 TVM---PDG-----RTMQIGTVHHLGDNFARTFGITYEKPDGEHEFAHQTCYGI-SERCI 268

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           AA+I    D  G+I P  V+P +I +I +  K  ++   + CEKI+ RL   G  V  DD
Sbjct: 269 AALISIHGDDLGLILPFEVSPTQIVIIPVLYKGKEKEVLELCEKIFDRLKGFGYRVLLDD 328

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+ G+++   +L G  +++ VG K V+++ V +  R    +  +S+EE+      R  
Sbjct: 329 SDERPGAKYYRWELKGAAMRIEVGPKEVAENAVVVSFRDERKKFKISVEELT---KERIE 385

Query: 444 N 444
            
Sbjct: 386 K 386


>gi|126466059|ref|YP_001041168.1| prolyl-tRNA synthetase [Staphylothermus marinus F1]
 gi|126014882|gb|ABN70260.1| prolyl-tRNA synthetase [Staphylothermus marinus F1]
          Length = 493

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 90/432 (20%), Positives = 166/432 (38%), Gaps = 74/432 (17%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
            EI  H  ++ T       KG+  W+P G KAL  +  I+      TG  E   PT+   
Sbjct: 33  HEILKHAKIVDT---RYPVKGMNVWMPYGLKALRMIQKIMINLLEETGHEEAYFPTMIPE 89

Query: 78  DLW-VESGRYDSYGKEML----RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            ++  E      +G E       +  + ++ +   PT E VM  ++   IK  ++LP   
Sbjct: 90  SVFSKEKDFLQGFGGETFVVEGTMTKKFNEKLFVRPTSETVMYYMWNIWIKGRKDLPLKM 149

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           YQ+   FR E +    ++R RE                                      
Sbjct: 150 YQVVNVFRYETKMTHPILRVREI------------------------------------- 172

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ- 251
                    +    +H     ++  E Q+       +  +      FD ++    IV+  
Sbjct: 173 ---------MSFIEAHTAHATSEEAEKQI-------NEALSIYKKFFDSLLLPYFIVKTP 216

Query: 252 -WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            W     A    +N     ++P+ K     G+E+G +   G K++      F  +DG   
Sbjct: 217 PWDTFAGAE---YNYDFITAMPDGK-----GLELGSVINLGQKFARAFDIKFMDSDGVTK 268

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIY 369
           +V    YG+ + R + AVI    D KG+  P  +AP ++ ++ I   D+    +  +KI 
Sbjct: 269 HVYQTCYGV-SERTLGAVIAIHGDQKGLFLPPIIAPIQVVIVPIARRDEQDIIEYAKKIS 327

Query: 370 ARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +L K G   F DD  E   G ++   ++ G P ++ +G + ++++ V I  R    +  
Sbjct: 328 EKLKKAGIRTFLDDDPEHTPGWKYYFWEMKGVPTRIEIGRRELNNNTVTIARRDGAKKIT 387

Query: 429 MSLEEVINYASH 440
           +S+ ++++    
Sbjct: 388 VSINDMVDKLRS 399


>gi|197303940|ref|ZP_03168972.1| hypothetical protein RUMLAC_02677 [Ruminococcus lactaris ATCC
           29176]
 gi|197296908|gb|EDY31476.1| hypothetical protein RUMLAC_02677 [Ruminococcus lactaris ATCC
           29176]
          Length = 478

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 148/412 (35%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  ++LP G    +N+   +      TG   + +P +    L   E    + +  E+  +
Sbjct: 37  GCMNYLPNGYALWENIQKELDARFKETGVENVYLPVMIPESLLQKEKDHIEGFAPEVAWV 96

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +   +     PT E +  D++   ++SYR+LP  + Q     R E   R   +RS
Sbjct: 97  THGGTEPLQERFCIRPTSETLFCDVWSKTVQSYRDLPKVWNQWCSVLRWEKTTRP-FLRS 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++            H+ +  +        ++         +   I          
Sbjct: 156 REFLWQEG-----------HTIHATYEEAEERTKQMWRVYRDFVQDVLAIPV-------- 196

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                   V   K   +    +++T   + +  +                          
Sbjct: 197 --------VSGRKTESEKFAGAQDTYTIEALMHDG------------------------- 223

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++ G   +FG+ +       +   + + H V   S+G+ + RV+ A+I   
Sbjct: 224 -------KALQSGTSHFFGSAFPNAFGIQYSDKNNELHEVYETSWGM-STRVIGALIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP +  +I I  H +   D   ++   L   G     DD  +  G +F
Sbjct: 276 GDDSGLVIPPRVAPVQTMVIPIAQHKEGVLDKANELLDTLKAAGYKAKIDDSDKAPGWKF 335

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  ++LG P ++ +G K + +++  I  R T  +  +SL+E+    +     
Sbjct: 336 SGQEILGIPTRIEIGPKDIENNQAVIVRRDTREKIVVSLDEITTKLAEVLET 387


>gi|291087823|ref|ZP_06572117.1| proline--tRNA ligase [Clostridium sp. M62/1]
 gi|291073860|gb|EFE11224.1| proline--tRNA ligase [Clostridium sp. M62/1]
          Length = 493

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 144/412 (34%), Gaps = 68/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 55  GCMVIKPDGYAIWENIQKELDRRFKETGVQNVYMPMFIPESLLQKEKDHVEGFAPEVAWV 114

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +   + M   PT E +  D +   I+SYR+LP  + Q     R E   R   +RS
Sbjct: 115 THGGLEPLQERMCVRPTSETLFCDFYARDIQSYRDLPKLYNQWCSVVRWEKTTRP-FLRS 173

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++     M   Y                               
Sbjct: 174 REFLWQEGHTAHATAEEAEERTELMLNLYADFCE-------------------------- 207

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                 E      I    +  E++    A  +            
Sbjct: 208 ----------------------EVLAMPVIRGRKTDKEKFAGAEATYT-----------I 234

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG  ++      F   D K  YV   S+G+   R++ A+I   
Sbjct: 235 EALMHDGKALQSGTSHNFGDGFAKAFGIQFSDKDNKLKYVHQTSWGM-TTRLIGAIIMVH 293

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ ++ I+   +   D   ++   LS  G  V  DD  +  G +F
Sbjct: 294 GDDSGLVLPPRIAPTQVVIVPIRQQAEGVLDKAYELKDILS--GFSVKVDDSDKSPGWKF 351

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + +++ G P++V +G K +  ++  +  R T  +  +SL+E+    +     
Sbjct: 352 SESEMRGIPVRVEIGPKDLEQNQAVLVRRDTHEKITVSLDEIKEKVTELLDT 403


>gi|167044004|gb|ABZ08690.1| putative anticodon binding domain protein [uncultured marine
           crenarchaeote HF4000_APKG3K8]
          Length = 479

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/416 (16%), Positives = 139/416 (33%), Gaps = 69/416 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G+    P G    +++   + ++   TG     +P L    L   E   ++    E+  +
Sbjct: 36  GLIVLRPDGYSIWESIKESLDKKLKETGHRNGFLPVLIPESLLAKEKEHFEGLNPEVFWV 95

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               +  +       PT E +   +F   IKS+R+LP          R E++     +R+
Sbjct: 96  TQSGNSEIGDRLALRPTSETLAYSLFSKWIKSWRDLPLKMNFWNSALRAEIKGTKPFLRT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++                                                H    
Sbjct: 156 SEFLWQEG-----------------------------------------------HTVHA 168

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             D  E +V    +     I  E          +   +   A Y  T +         +P
Sbjct: 169 TKDEAEKEVADILELYKKTIEEELAVPVITGKKSEKDKFVGAVYTDTLE-------SLMP 221

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           + K      +++G   + G  +S P    +   +  + +    S+G+ + R++  +I + 
Sbjct: 222 DGK-----ALQMGTSHFLGQNFSKPFDVKYLDENNVEAFAWQTSWGV-SWRLIGGMIMTH 275

Query: 333 HDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QI 388
            D KG++ P  VAP ++ +I I       +       +I   LS     V  DD      
Sbjct: 276 GDDKGLVLPPKVAPIQVVIIPIYYSNDEKENVLQTACQIKDSLSNNDIRVHLDDREHLTP 335

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +F   ++ G P+++ +G K ++ ++V +  R    +  + ++ +          
Sbjct: 336 GFKFNDWEMKGIPIRIEIGPKDIAKNQVVLVRRHNQTKISIGIDALTEKILTDLKT 391


>gi|281425750|ref|ZP_06256663.1| proline--tRNA ligase [Prevotella oris F0302]
 gi|281400158|gb|EFB30989.1| proline--tRNA ligase [Prevotella oris F0302]
          Length = 493

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 140/412 (33%), Gaps = 48/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A + +E  +TG      P L     L  E+     + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQAQLDKEFKKTGVQNAYFPLLIPKSFLSREAEHVKGFAKECAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                       + EE  + +     K    L        + +           +     
Sbjct: 96  THYR------LKSSEEGNSVVVDPSAKLEEELIIRPTSETIIWN--------TYKGWIHS 141

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +D          +   +      +LR    L  +     A       +      V AD 
Sbjct: 142 WRDLPIMCNQW-CNVMRWEMRTRPFLRTSEFLWQEGHTAHATREEAEVEAQKMLKVYADF 200

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E             +P               V+  T  +A   D +         E   
Sbjct: 201 AEK---------WMAVPVL-----------QGVKSETERFAGALDTYT-------IEAMM 233

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++     TF   + K  YV   S+G+ + R++ A+I    D  
Sbjct: 234 QDGKALQSGTSHFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-STRLMGALIMVHSDDN 292

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ ++ I   D   +    K+     +L ++G  V +DD   ++ G +F
Sbjct: 293 GLVLPPKLAPIQVVIVPIYKGDDQLKAISNKLQPVINKLEELGISVKYDDSDNKRPGFKF 352

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  +L G P+++++G + + ++ +EI  R T  +E +S + ++        +
Sbjct: 353 ADYELKGIPVRLVMGGRDLENNTIEIMRRDTLEKESVSFDGIVERVKTLLDD 404


>gi|229131392|ref|ZP_04260291.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST196]
 gi|228652083|gb|EEL08021.1| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST196]
          Length = 476

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 146/414 (35%), Gaps = 71/414 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   +G   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKESGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL                                                    E   
Sbjct: 156 TEFL--------------------------------------------------WQEGHT 165

Query: 213 LADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           + +T E     + + ++       E      I    +  E++    A  +          
Sbjct: 166 IHETAEESQIETLNILNLYAAFCEEYLAIPVIKGQKTEKEKFAGAKATYT---------- 215

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             E+     + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I 
Sbjct: 216 -IESLMHDGKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIM 273

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              D  G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  G 
Sbjct: 274 VHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLEKATELQGRIQKV-ARVKIDASNKTPGW 332

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 333 KFNEYEMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPVLLEE 386


>gi|229009880|ref|ZP_04167100.1| Prolyl-tRNA synthetase 2 [Bacillus mycoides DSM 2048]
 gi|228751498|gb|EEM01304.1| Prolyl-tRNA synthetase 2 [Bacillus mycoides DSM 2048]
          Length = 476

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 146/414 (35%), Gaps = 71/414 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   +G   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKESGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLAERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL                                                    E   
Sbjct: 156 TEFL--------------------------------------------------WQEGHT 165

Query: 213 LADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           + +T E     + + ++       E      I    +  E++    A  +          
Sbjct: 166 IHETAEESQIETLNILNLYAAFCEEYLAIPVIKGQKTEKEKFAGAKATYT---------- 215

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             E+     + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I 
Sbjct: 216 -IESLMHDGKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIM 273

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              D  G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  G 
Sbjct: 274 VHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLEKATELQGRIQKV-ARVKIDASNKTPGW 332

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 333 KFNEYEMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPVLLEE 386


>gi|148642347|ref|YP_001272860.1| prolyl-tRNA synthetase [Methanobrevibacter smithii ATCC 35061]
 gi|222444465|ref|ZP_03606980.1| hypothetical protein METSMIALI_00076 [Methanobrevibacter smithii
           DSM 2375]
 gi|172048060|sp|A5UJW4|SYP_METS3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148551364|gb|ABQ86492.1| prolyl-tRNA synthetase, ProS [Methanobrevibacter smithii ATCC
           35061]
 gi|222434030|gb|EEE41195.1| hypothetical protein METSMIALI_00076 [Methanobrevibacter smithii
           DSM 2375]
          Length = 469

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/460 (18%), Positives = 175/460 (38%), Gaps = 93/460 (20%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  IL+E    A I   +  ++         G+  W+P G +       +I+E  +
Sbjct: 5   FSEWFHDILEE----ANITDSRYPIK---------GMAVWMPYGFQIRKYTTNLIKEVYD 51

Query: 63  RTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
           R    E+  P L   A+L  E      +  E+  +      + ++ +   PT E  +  +
Sbjct: 52  R-DHEEVLFPLLVPEAELAKEGLHVKGFEDEVYWVTHGGKTQLNEKLALRPTSETSIYPM 110

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNK 176
           +   I+S+ +LP  +YQI   FR E +    ++R RE    K+A++   + E +     +
Sbjct: 111 YSLWIRSHIDLPLKYYQIVNTFRYETKHTRPLIRVREITTFKEAHTAHASKEEADIQVQE 170

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              +Y  IF  LG+     +                                        
Sbjct: 171 HIENYKEIFDTLGIPYTLTK---------------------------------------- 190

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                         +W     A   +  + +    P+ K      +++G I   G  ++ 
Sbjct: 191 ------------RPEWDKFPGADYTMAFDAIM---PDGK-----TLQIGTIHNLGQTFAK 230

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-- 354
               TF+  DG+   V     G+ + RV+A+ I    D KG+  P  ++P +I++I I  
Sbjct: 231 TFDITFEDKDGEHKLVYQTCAGL-SDRVIASAIGIHGDEKGLRLPPEISPKQITIIPILF 289

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           K   +     CE++       G  V  D+   + G +F   +L G P+++ +G + + ++
Sbjct: 290 KKGKEEVLAKCEELKKEFEAAGLRVNIDNRDIRPGKKFYDWELKGTPIKLELGPRDLENN 349

Query: 415 -KVEIKHRLTGIREDMSLEE--------VINYASHRFSNN 445
             + ++ R    + ++ L+E        +I+  +   + +
Sbjct: 350 KTIAMR-RDQLEKIELDLDENLVSNVIRLIDELNENLAES 388


>gi|116195310|ref|XP_001223467.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88180166|gb|EAQ87634.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 556

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 143/437 (32%), Gaps = 74/437 (16%)

Query: 27  LRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVES 83
           L+  MI  ++   G +   P      + +    +E     G  E + P   S   L  E 
Sbjct: 66  LKAEMIEYYTEISGFFIMRPATMYVWNTIRKWFQERIEEMGVEETNFPMFLSQKSLEKEK 125

Query: 84  GRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +    DK +       PT E VM   +   I+S+R+LPF   Q     
Sbjct: 126 DHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPFRLNQWNSVV 185

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  LT + +     ++   Y  I+ +L           
Sbjct: 186 RWEAKQTTPFLRAREFLWQEGHTAHLTEQLAGEEVLQILELYAGIYEQL----------- 234

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                                     +    +  E++   Y  T
Sbjct: 235 -------------------------------------LAVPVVRGRKTEAEKFAGGYYTT 257

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  +   +P N     RGI+       G  +S     T +  + K  ++ +     
Sbjct: 258 ------TVEGYIPSNG----RGIQGATSHCLGQNFSKMFDITVEDPNEKGKHINVWQNSW 307

Query: 320 G-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYAR 371
           G + RV+  ++    D KG++ P  +A  +  LI +           +      ++I+  
Sbjct: 308 GLSTRVIGVMVMIHGDDKGLVLPPRIAKIQSILIPVGLTAKMTAEEKEKHLKHLDEIFFT 367

Query: 372 LSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +   G     D         +F   +L G PL++  G K  +   V    R TG +  + 
Sbjct: 368 IKNAGIRTEVDLRDGYTPAWKFNDWELKGVPLRLEFGPKDAAKEVVSYARRDTGEKGTIP 427

Query: 431 LEEVINYASHRFSNNRP 447
           + E+           + 
Sbjct: 428 ITELTTKIPELLETIQQ 444


>gi|288869805|ref|ZP_05976398.2| proline--tRNA ligase [Methanobrevibacter smithii DSM 2374]
 gi|288860320|gb|EFC92618.1| proline--tRNA ligase [Methanobrevibacter smithii DSM 2374]
          Length = 469

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/460 (18%), Positives = 175/460 (38%), Gaps = 93/460 (20%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  IL+E    A I   +  ++         G+  W+P G +       +I+E  +
Sbjct: 5   FSEWFHDILEE----ANITDSRYPIK---------GMAVWMPYGFQIRKYTTNLIKEVYD 51

Query: 63  RTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
           R    E+  P L   A+L  E      +  E+  +      + ++ +   PT E  +  +
Sbjct: 52  R-DHEEVLFPLLVPEAELAKEGLHVKGFEDEVYWVTHGGKTQLNEKLALRPTSETSIYPM 110

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNK 176
           +   I+S+ +LP  +YQI   FR E +    ++R RE    K+A++   + E +     +
Sbjct: 111 YSLWIRSHIDLPLKYYQIVNTFRYETKHTRPLIRVREITTFKEAHTAHASKEEADIQVQE 170

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              +Y  IF  LG+     +                                        
Sbjct: 171 HIENYKEIFDTLGIPYTLTK---------------------------------------- 190

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                         +W     A   +  + +    P+ K      +++G I   G  ++ 
Sbjct: 191 ------------RPEWDKFPGADYTMAFDAIM---PDGK-----TLQIGTIHNLGQTFAK 230

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-- 354
               TF+  DG+   V     G+ + RV+A+ I    D KG+  P  ++P +I++I I  
Sbjct: 231 TFDITFEDKDGEHKLVYQTCAGL-SDRVIASAIGIHGDEKGLRLPPEISPKQITIIPILF 289

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           K   +     CE++       G  V  D+   + G +F   +L G P+++ +G + + ++
Sbjct: 290 KKGKEEVLAKCEELKKEFEAAGLRVNIDNRDIRPGKKFYDWELKGTPIKLELGPRDLENN 349

Query: 415 -KVEIKHRLTGIREDMSLEE--------VINYASHRFSNN 445
             + ++ R    + ++ L+E        +I+  +   + +
Sbjct: 350 KTIAMR-RDQLEKIELDLDENFVSNVIRLIDELNENLAES 388


>gi|218132749|ref|ZP_03461553.1| hypothetical protein BACPEC_00610 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992475|gb|EEC58478.1| hypothetical protein BACPEC_00610 [Bacteroides pectinophilus ATCC
           43243]
          Length = 477

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 143/420 (34%), Gaps = 75/420 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   + P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMIFKPDGYAIWENIQHELDRRFKATGVKNVYMPMFIPESLLQREKDHVEGFAPEVAWV 98

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
            +       + M   PT E +  D +++ I+SYR+LP    Q     R E   R   +RS
Sbjct: 99  TEGGLQPLQEKMCVRPTSETLFCDYYKNEIQSYRDLPQLCNQWCSVVRWEKETRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++    +M   Y                               
Sbjct: 158 REFLWQEGHTAHATAEEAEARTQQMLNLYADFVE-------------------------- 191

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                 E      I    +  E++    A  +            
Sbjct: 192 ----------------------EVLAIPVIKGRKTDKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG  ++      +   D K  YV   S+G+   R++ A+I   
Sbjct: 219 EALMHDGKALQSGTSHNFGDGFAKAFGIQYTDKDNKLKYVHQTSWGM-TTRLIGALIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ ++ +        D   +I   LS     V  DD  +  G +F
Sbjct: 278 GDNSGLVLPPRIAPVQVCIVPVMQKKPGVLDKAFEIKEVLS--NFRVKVDDSDKSPGWKF 335

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE-------EVINYASHRFSNN 445
           +  ++ G PL++ +G + +  ++  +  R  G +  +SL+       E++          
Sbjct: 336 SEQEMRGIPLRIEMGPRDIEANQAVLVRRDNGEKITVSLDEIDVRVGELLEIIQKEMLER 395


>gi|262043503|ref|ZP_06016623.1| threonine-tRNA ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039149|gb|EEW40300.1| threonine-tRNA ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 530

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 95/287 (33%), Gaps = 24/287 (8%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +     +   RD      +L L       ++ G   W P G     ++ A +R      G
Sbjct: 243 WLEKTAEAEKRDHRKLGRELDLF--HFQDNAPGAVFWHPRGWTIFQSLIAYMRSRHEVAG 300

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E++ P +    LW  SG +D+Y   M      + +     P +      +F+  IKSY
Sbjct: 301 YVEVNTPDVMDRSLWEISGHWDNYRDHMFTTQTEDGRNFALKPMNCPGAVSLFKYGIKSY 360

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R E      G++R R F   DA+ F    +        +    L I
Sbjct: 361 RDLPVRLSEFGKVHRYEPSGSLHGLLRVRHFTQDDAHIFCTLQQVEGEC-KSILQLVLDI 419

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + + G + + ++  + P                      S    D    + +   +    
Sbjct: 420 YKQFGFEEVAIKLSTRPEKR-----------------MGSDADWDRLENALSASLEAQGL 462

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
             S+     A Y    +     L D++  + +     +++     F 
Sbjct: 463 QWSVNPGEGAFYGPKLEF---VLRDAIGRDWQCGTLQVDMNLPERFD 506


>gi|331087229|ref|ZP_08336299.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330408915|gb|EGG88376.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 479

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 142/418 (33%), Gaps = 67/418 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMVIKPAGYAIWENIQHELDRRFKETGVENVYLPMFIPESLLQKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +   + +   PT E +  D +   I+S+R+LP  + Q     R E   R   +RS
Sbjct: 99  THGGLEPLQERLCVRPTSETLFCDFYAKDIQSHRDLPKVYNQWCSVVRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++     M   Y                               
Sbjct: 158 REFLWQEGHTAHATAEEAEERTIMMLNVYADFCE-------------------------- 191

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                 E      I    +  E++    A  +            
Sbjct: 192 ----------------------EVLAIPVIKGRKTDKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FG  ++      +   + K  YV   S+G+   R++ A+I   
Sbjct: 219 ESLMHDGKALQSGTSHNFGDGFAKAFGIQYTDKENKLQYVHQTSWGM-TTRMIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ +I I+       D   ++   L K G  V  DD  +  G +F
Sbjct: 278 GDNSGLVLPPRIAPVQVMVIPIQQKKDGVLDKAYEVKEVLKKAGLSVKVDDSDKSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN-NRPVL 449
           +  ++ G P+++ +G K +      +  R T  +  +  EE+    +       + +L
Sbjct: 338 SEQEMRGIPVRIELGPKDIEAGHAVVVRRDTREKIIVPFEELETKVAEVLDTMQKEML 395


>gi|163938386|ref|YP_001643270.1| prolyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|163860583|gb|ABY41642.1| prolyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
          Length = 476

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 146/414 (35%), Gaps = 71/414 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ E+   +G   + +P      L   E    + +  E+  +
Sbjct: 37  GCMILRPYGYALWENMQKVMDEKLKESGHENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 96

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + F   ++SY +LP  + Q     R E   R  + R+
Sbjct: 97  THGGDEKLVERLCIRPTSETLFCEHFSKIVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL                                                    E   
Sbjct: 156 TEFL--------------------------------------------------WQEGHT 165

Query: 213 LADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           + +T E     + + ++       E      I    +  E++    A  +          
Sbjct: 166 IHETAEESQIETLNILNLYAAFCEEYLAIPVIKGQKTEKEKFAGAKATYT---------- 215

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             E+     + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I 
Sbjct: 216 -IESLMHDGKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIM 273

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              D  G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  G 
Sbjct: 274 VHSDNNGLVMPPKVAPVQVVIVPIAQHKEGVLEKATELQGRIQKV-ARVKIDVSNKTPGW 332

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +F   ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 333 KFNEYEMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPVLLEE 386


>gi|305664329|ref|YP_003860617.1| prolyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
 gi|304378898|gb|ADM28737.1| prolyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
          Length = 493

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 101/454 (22%), Positives = 171/454 (37%), Gaps = 84/454 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  I++E    AEI                KG+  W+P G +   NV  IIR   N
Sbjct: 14  FSQWFEWIIRE----AEIYD--------YGRYPVKGMGIWMPYGFQIRRNVIEIIRNLLN 61

Query: 63  RTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDI 117
            TG  E+  P L    L+  ES     +  E+L +     +  D  ++  PT E  ++ +
Sbjct: 62  ETGHEEVLFPILIPEILFRRESEHVRGFEGEVLWVTRGGNEELDVKLVLRPTSETAISYM 121

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNK 176
               IKSY+ LP  +YQ+   FR E +    ++R RE    K+A++     E S+    +
Sbjct: 122 ESFWIKSYKQLPKKYYQVVSVFRYETKMTKPMIRVREITTFKEAHTVHENFEDSERQVLE 181

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               Y + F  LG+  I  R                                        
Sbjct: 182 AIDIYSKFFDELGIPYIISR---------------------------------------- 201

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                         QW     A   +  + +F   P+      R I++G +   G  ++ 
Sbjct: 202 ------------RPQWDKFAGALYTIAFDTVF---PDG-----RAIQIGTVHNLGQTFTS 241

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                 +  D    Y    SYGI + RV+A++I    D  G+I P +VAP+ + +I I  
Sbjct: 242 VFDVKIQKRDETIDYAWQTSYGI-SERVIASIIAIHSDDIGLILPSNVAPYTVVIIPIPH 300

Query: 357 HDQVC----RDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFV 411
            D+       + C  I+  L         D+    +   ++   +L G P+++ +G K V
Sbjct: 301 QDEKIYQSIINYCNDIHNILKVNNIRSLIDERLDVKPAEKYRECELKGVPIRIEIGFKEV 360

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           S + V +  R    R  ++ +E+I+   +     
Sbjct: 361 SQNTVTLFRRDLRKRFTINKDELISVIKNVLEEY 394


>gi|226304250|ref|YP_002764208.1| threonyl-tRNA synthetase [Rhodococcus erythropolis PR4]
 gi|226183365|dbj|BAH31469.1| putative threonyl-tRNA synthetase [Rhodococcus erythropolis PR4]
          Length = 406

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/430 (15%), Positives = 125/430 (29%), Gaps = 35/430 (8%)

Query: 17  DAEIASHKLMLRTGM-IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           D       L       I     G+  WLP G    + +     E+  R+G   +  P + 
Sbjct: 4   DHRELGRDLEFFATTPI--VGAGLPLWLPDGAVIRNELEKFAAEQAARSGCQGVYTPVMA 61

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             +L+  SG +  + ++M        ++ +  P +      +F +  +SYR LPF   ++
Sbjct: 62  KKELYERSGHWSKFSEDMFPEMKIGGESFLLRPANCPHHAQVFAARGRSYRELPFRVREL 121

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              FR EL      +     +  D      + E  +        +  R +  LG+     
Sbjct: 122 GSMFRSELSGVLSGLSRVRQINLDDAHVFCSREQVQAEVIVALDAIERCYSTLGIAERKY 181

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           R                    GE Q   + +             +         +   A 
Sbjct: 182 RLSIRG---------------GEGQYLGTDEQWADAEDHLRGALNARSIEYVEAKGEAAF 226

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y    DV   ++ D+    + +S   ++                  +   DG      M 
Sbjct: 227 YGPKIDV---QVRDAHGREETLSTVQLDFNQP--------ERFDLEYTAEDGSKVRPVMI 275

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
             G+         +    +      P  +AP ++S++ +    QV     E++ A L   
Sbjct: 276 HRGLLGSMERMTALL--IERFEGRMPPWLAPNQVSILPVGDRHQV---EAERLRADLEAR 330

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V        +G +   A     P   ++G   V    V++     G R  +     +
Sbjct: 331 DVRVAI-APDGSLGRRIREARTHRDPYIAVIGDNEVHGGTVDVLVPARGGRVVVDASVFV 389

Query: 436 NYASHRFSNN 445
                     
Sbjct: 390 AQVVSGIKER 399


>gi|85076319|ref|XP_955907.1| hypothetical protein NCU04449 [Neurospora crassa OR74A]
 gi|28916937|gb|EAA26671.1| hypothetical protein NCU04449 [Neurospora crassa OR74A]
 gi|40882172|emb|CAF05998.1| probable proline-tRNA ligase [Neurospora crassa]
          Length = 558

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 143/440 (32%), Gaps = 77/440 (17%)

Query: 27  LRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVES 83
           L+  +I  ++   G +   P      + +    +E  +  G  E + P   S   L  E 
Sbjct: 66  LKAELIEYYTEISGFFIMRPATMYIWNVIRKWFQEHIDELGVEETNFPMFLSQKSLEKEK 125

Query: 84  GRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRS---HIKSYRNLPFTFYQIQ 136
              + +  E+  +    DK +       PT E VM          I+S+R+LPF   Q  
Sbjct: 126 EHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPWKPDYAKWIRSHRDLPFRLNQWN 185

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REF+ ++ ++  LT + +     ++   Y  ++ +L        
Sbjct: 186 SVVRWEAKQTTPFLRAREFMWQEGHTAHLTEQAAGEEVLQILEFYAGVYEQL-------- 237

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                                                        +    +  E++   Y
Sbjct: 238 ----------------------------------------LAVPVVRGRKTEAEKFAGGY 257

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             T       +   +P N     RGI+       G  +S     T +    K  ++ +  
Sbjct: 258 YTT------TVEGYIPSNG----RGIQGATSHCLGQNFSKMFDITVEDPAEKGKHIHVWQ 307

Query: 317 YGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKI 368
              G + RV+  ++    D KG++ P  +A  +  LI +                  +++
Sbjct: 308 NSWGLSTRVIGVMVMIHGDDKGLVLPPRIAKIQSILIPVGLTAKMSAEEKDAHMKKVDEL 367

Query: 369 YARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            A L K G     D   G     +F   +L G PL++  G K  +   V    R TG + 
Sbjct: 368 LATLKKAGVRADVDTREGYTPAWKFNDWELKGVPLRIEFGPKDAAKDVVSYARRDTGEKG 427

Query: 428 DMSLEEVINYASHRFSNNRP 447
            + + E+           + 
Sbjct: 428 TIPIAELTTKVPELLETIQQ 447


>gi|282881336|ref|ZP_06290016.1| proline--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281304812|gb|EFA96892.1| proline--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 493

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 171/444 (38%), Gaps = 85/444 (19%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+++  +  Q +  G     P G    + +   + +    TGA     P L     L  E
Sbjct: 22  LVIKADLAEQSAVRGCMVIKPYGYAIWEKMQQQLDKMFKETGAQNAYFPLLIPKSFLSKE 81

Query: 83  SGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIKS 124
           +     + KE   +                    + ++ +I  PT E ++ + +++ IKS
Sbjct: 82  AEHVKGFAKECAVVTHYRLKSSEEGTGVEVDPAAKLEEELIIRPTSETIIWNTYKNWIKS 141

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+LP    Q     R E+R R   +R+ EFL ++ ++   T E ++    KM   Y   
Sbjct: 142 WRDLPLMCNQWCNVMRWEMRTRP-FLRTSEFLWQEGHTAHATREEAEAEAQKMLKVY--- 197

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                                        AD  E             +P           
Sbjct: 198 -----------------------------ADFAEQ---------WMAVP----------- 208

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           +   V+  T  +A   D +         E      + ++ G   + G  ++     T+  
Sbjct: 209 VVQGVKSETERFAGALDTYT-------IEAMMQDGKALQSGTSHFLGQNFAKSFDVTYLN 261

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I    +  +  
Sbjct: 262 KENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPRLAPIQVVIVPISKTSEQLKAI 320

Query: 365 CEKIY---ARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +++      L  +G  V +DD   ++ G +FA  +L G P+++++G + + ++ +E+  
Sbjct: 321 HDQLKPIIDGLRAMGITVKFDDNDTKRPGFKFADYELKGVPVRLVMGGRDLENNTIEVMR 380

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R T  +E +SLE+++ Y       
Sbjct: 381 RDTLQKETVSLEKILEYVPKLLEE 404


>gi|313203193|ref|YP_004041850.1| prolyL-tRNA synthetase [Paludibacter propionicigenes WB4]
 gi|312442509|gb|ADQ78865.1| prolyl-tRNA synthetase [Paludibacter propionicigenes WB4]
          Length = 490

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/430 (18%), Positives = 160/430 (37%), Gaps = 84/430 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG +    P       L  E+   + + KE   +
Sbjct: 33  GCMVIKPYGYAIWEKIQAELDRMFKETGHVNAYFPLFIPKSFLSKEAEHVEGFAKECAVV 92

Query: 97  ADRN------------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                                 ++ +I  PT E ++ + ++  I+SYR+LP    Q    
Sbjct: 93  THHRLMADPNGKGLIVDPDAKLEEELIVRPTSETIIWNTYKGWIQSYRDLPILINQWANV 152

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E+R R  + R+ EFL ++ ++   T   +     KM   Y                 
Sbjct: 153 VRWEMRTRLFL-RTAEFLWQEGHTAHATEAEAVTEARKMLEVY----------------- 194

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                 D +  F+                              +  + S  E++      
Sbjct: 195 -----ADFAERFMA--------------------------VPVLKGVKSANERFAG---- 219

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                   L     E      + ++ G   + G  ++     TF     K  YV   S+G
Sbjct: 220 -------ALDTYCIEALMQDGKALQAGTSHFLGQNFAKAFDVTFMDKSNKLDYVWATSWG 272

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKV 375
           + + R++ A+I +  D  G++ P ++APF++ ++ I  +++         +++  +L  +
Sbjct: 273 V-STRLMGALIMTHSDDNGLVLPPNLAPFQVVIVPIYKNEEQLAAIDAKVDEMIPKLKAL 331

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +D+   ++ G +FA  +L G P+++ +G++ + +  VE+  R T  +E +++E V
Sbjct: 332 GISVKYDNNDNKKPGWKFAEYELKGVPVRLALGARDLENGTVEVARRDTLTKETVAIEGV 391

Query: 435 INYASHRFSN 444
            NY S     
Sbjct: 392 ENYISDLLKT 401


>gi|302348192|ref|YP_003815830.1| Prolyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
 gi|302328604|gb|ADL18799.1| Prolyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
          Length = 482

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 85/419 (20%), Positives = 144/419 (34%), Gaps = 74/419 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G+  W+P G +    V  ++R+  + TG  E+  P L     L  ES     +  E+  +
Sbjct: 36  GMGVWMPYGFQIRRRVTDLLRKLLDETGHEEVLFPLLIPDWMLAKESEHVKGFEDEVYWV 95

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +  D+ +   PT E  +T      ++SY+ LP  FYQI   FR E +    ++R 
Sbjct: 96  THGGLEELDQKLALRPTSETPITYYESLWVQSYKQLPRKFYQIVSVFRYETKATRPLIRV 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           RE  M                                                 +H    
Sbjct: 156 REISMF----------------------------------------------KEAHTVHE 169

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS--IVEQWTAPYAATSDVHNEKLFDS 270
             +  E+QV          I      FD +           W     A   +  + +   
Sbjct: 170 SFEDAESQV-------KEAIDVYRKFFDSLGIPYIISRRPDWDKFAGALYTIAFDTVM-- 220

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            P+      R +++G +   G  ++   S   +  D K  Y    SYG+ + RVVA +I 
Sbjct: 221 -PDG-----RTLQIGTVHNLGQNFTKAFSFRIQTRDEKFDYPWQTSYGV-SDRVVATLIA 273

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYARLSKVGCDVFWDDM-G 385
              D  G++ P  +AP +  +I I +  +       +    + + L   G     DD   
Sbjct: 274 IHGDDMGLVLPPDIAPTQAVIIPIPSQSEEDSRKVLEYSRGVLSTLLSSGIRAKLDDRED 333

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              G ++   D  G P++V +G +  S + V I  R T  +  + L E +      F  
Sbjct: 334 TTPGDKYYYWDAKGVPVRVEIGPREASGNTVTIVRRDTLEKRTVPLSEAVGSIKKTFDE 392


>gi|126662081|ref|ZP_01733080.1| prolyl-tRNA synthetase [Flavobacteria bacterium BAL38]
 gi|126625460|gb|EAZ96149.1| prolyl-tRNA synthetase [Flavobacteria bacterium BAL38]
          Length = 492

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 80/431 (18%), Positives = 156/431 (36%), Gaps = 85/431 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKE---- 92
           G     P G    + + A +      TG      P      ++  E    + + KE    
Sbjct: 33  GCMVIKPYGYAIWEKMQAELDRMFKETGHSNAYFPLFVPKSMFEAEEKNAEGFAKECAIV 92

Query: 93  ---------------MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                          M+    + ++ +I  PT E ++   ++  ++SYR+LP    Q   
Sbjct: 93  THYRLKNDPEKPGKLMVDPNAKLEEELIVRPTSEAIIWSTYKGWVQSYRDLPLLINQWAN 152

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E+R R  + R+ EFL ++ ++   T + +     KM   Y                
Sbjct: 153 VVRWEMRTRLFL-RTAEFLWQEGHTAHATRQEAIEESEKMMNVY---------------- 195

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                  D +  F+                              I  L +  E++     
Sbjct: 196 ------ADFAQNFMA--------------------------IPVIKGLKTETERFAG--- 220

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E      + ++ G   + G  ++      F   +GK  YV   S+
Sbjct: 221 --------ADETYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFANKEGKQEYVWGTSW 272

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSK 374
           G+ + R++ A++ +  D KG++ P ++AP ++ ++ I   D+      E+   + A L K
Sbjct: 273 GV-STRLMGALVMTHSDDKGLVLPPNLAPIQVVIVPIYKTDEQFDAISEQVNALAAELRK 331

Query: 375 VGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +G  V +D+   ++ G +FA  +L G P+++ +G   + +   EI  R    +E +S E 
Sbjct: 332 LGISVKYDNRDTQKPGFKFAEWELKGVPVRIALGPNDLENGTYEIARRDNLSKEVVSKEG 391

Query: 434 VINYASHRFSN 444
           V +Y  +    
Sbjct: 392 VASYIQNLLET 402


>gi|302845190|ref|XP_002954134.1| hypothetical protein VOLCADRAFT_109913 [Volvox carteri f.
           nagariensis]
 gi|300260633|gb|EFJ44851.1| hypothetical protein VOLCADRAFT_109913 [Volvox carteri f.
           nagariensis]
          Length = 618

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 84/421 (19%), Positives = 142/421 (33%), Gaps = 73/421 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + V     +   + G      P   + D L  E    + +  E+  
Sbjct: 161 SGCYILRPWAYAMWEMVQGWFDKRIKQLGVQNSYFPLFITEDVLNKEKDHVEGFAPEVAW 220

Query: 96  LADR----NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        +K +   PT E VM   F   I+S+R+LP    Q     R E +     +R
Sbjct: 221 VTKCGNSTMEKPIAIRPTSETVMYPYFAQWIRSHRDLPLRLNQWTNVVRWEFKYPTPFIR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T E +      +   Y  ++  +                       
Sbjct: 281 SREFLWQEGHTAFATQEEAAREVLDILELYRGVYEDM----------------------- 317

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                              S  EQ+  A Y  T + +       
Sbjct: 318 -------------------------LAVPVTKGKKSKKEQFAGAFYTTTVEAY------- 345

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +PE    + RGI+       G  +S      F+  D +  YV   S+G+   R +  +I 
Sbjct: 346 IPE----TGRGIQGATSHCLGQNFSKMFGIQFEDDDRQKQYVWQNSWGL-TTRSLGVMIM 400

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHD------QVCRDACEKIYARLSKVGCDVFWDDM 384
           +  D KG++ P  VAP ++ +I I          Q   +   ++   L K G  V  D  
Sbjct: 401 THADDKGLVLPPRVAPKQVVIIPIPKASTTPETVQAMMEKVTELAEALEKAGVRVVTDTR 460

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                G ++   +L G PL++ +G K + +S V +  R TG +E +   +V         
Sbjct: 461 VNYTPGWKYNHWELKGLPLRMELGPKDMENSVVVLARRDTGAKEAVPWTDVAARVPALLE 520

Query: 444 N 444
            
Sbjct: 521 T 521


>gi|115376687|ref|ZP_01463915.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|115366304|gb|EAU65311.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 372

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 59/390 (15%), Positives = 122/390 (31%), Gaps = 38/390 (9%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
           +  W P G      +   +R E    G  E+  P +    +W  SG + ++   M  + D
Sbjct: 1   MVFWHPRGFVLYQLLEERVRRELASGGYREVRTPQVLGQRIWESSGHWQNFRHGMF-VLD 59

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLM 157
             ++     P        +F+    S+R+LP    +  L  R+E      G+ R R+F  
Sbjct: 60  DGERPFAMKPVSCPGHIQLFQRLAPSFRSLPLRMAEFGLVHRNESSGALHGLFRLRQFTQ 119

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            D + F +  + +         S    +   G +   +   S P                
Sbjct: 120 DDGHIFCMEEQVADE-VAAFCRSLRAFYRGFGFEDAQVAFSSRPAQR------------- 165

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
                      D    +       +     +     A Y    +     L D    + + 
Sbjct: 166 ----AGDDALWDRAEAALLEAAGRVGLDCRMQPGEGAFYGPKLEFI---LKDRSGRDWQC 218

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGK 336
               ++    F    ++ L     +  + G+      +     G++     ++    +  
Sbjct: 219 GTIQLD----FVLPERFDLH----YVDSGGEKRRPAMLHRAIFGSVERFLGILL---EHH 267

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
             + P  +AP ++ ++ + A          ++   L   G  V  D  GE +  +   A 
Sbjct: 268 QGVLPAWLAPEQVRVLPVGADSH---AYAAEVQEHLLAAGLRVEADARGETLSRRILEAH 324

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
               P  V+VG +  +   ++I+ R    R
Sbjct: 325 QDAVPFAVLVGPREQAGRSIQIRERGGAQR 354


>gi|299140723|ref|ZP_07033861.1| proline--tRNA ligase [Prevotella oris C735]
 gi|298577689|gb|EFI49557.1| proline--tRNA ligase [Prevotella oris C735]
          Length = 493

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 71/412 (17%), Positives = 141/412 (34%), Gaps = 48/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A + +E  +TG      P L     L  E+     + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQAQLDKEFKKTGVQNAYFPLLIPKSFLSREAEHVKGFAKECAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                       + EE  + +     K    L        + +           +     
Sbjct: 96  THYR------LKSSEEGNSVVVDPSAKLEEELIIRPTSETIIWN--------TYKGWIHS 141

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +D          +   +      +LR    L  +     A       +      V AD 
Sbjct: 142 WRDLPIMCNQW-CNVMRWEMRTRPFLRTSEFLWQEGHTAHATREEAEVEAQKMLKVYADF 200

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E             +P               V+  T  +A   D +         E   
Sbjct: 201 AEK---------WMAVPVL-----------QGVKSETERFAGALDTYT-------IEAMM 233

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++     TF   + K  YV   S+G+ + R++ A+I    D  
Sbjct: 234 QDGKALQSGTSHFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-STRLMGALIMVHSDDN 292

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ ++ I   D   +    K+     +L ++G  V +DD   ++ G +F
Sbjct: 293 GLVLPPKLAPIQVIIVPIYKGDDQLKAISNKLQPVINKLEELGISVKYDDSDNKRPGFKF 352

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  +L G P+++++G + + ++ +EI  R T  +E +S + +I   +    +
Sbjct: 353 ADYELKGIPVRLVMGGRDLENNTIEIMRRDTLEKESVSFDGIIERVTTLLDD 404


>gi|300120318|emb|CBK19872.2| unnamed protein product [Blastocystis hominis]
          Length = 414

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 77/456 (16%), Positives = 148/456 (32%), Gaps = 66/456 (14%)

Query: 11  LQENP-RDAEIASHKL--MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           ++E   RD  +   KL  +L  G    +S G   +L  G      +   ++    +    
Sbjct: 1   MREAKERDHRVVGKKLEMLLFDG----NSPGNVFFLDRGLFTYSRLVEYLKSHYLQE-YE 55

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM--IYGPTHEEVMTDIFRSHIKSY 125
           E++ P L  ++LW  SG YD Y   M ++  R+DK       P +      ++    +SY
Sbjct: 56  EIASPLLFKSNLWKISGHYDHYRSNMFQVNTRDDKDEETFLKPMNCPSHCIVYAHKGRSY 115

Query: 126 R----------NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           R          +LP  + +     R E      G+ R   F   D + F    + S+   
Sbjct: 116 RSSLWLAVTSSDLPIRYAEFTAIHRQENSGALGGLTRLNMFHQDDGHIFCRKDQISQE-I 174

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           + +  +   ++ +LG                   +F  +  T  +      D        
Sbjct: 175 STLLSTIKSLYSKLG------------------FDFSFVLSTQPSDSVGQSDEWKDTEAQ 216

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
             +  + +    S+ E   A YA   DV    + DS+    +     ++V     FG   
Sbjct: 217 LRSILEKLGLDYSVEEGDGAFYAPKIDVL---IQDSIRRYHQCGTIQLDVQLPKKFG--- 270

Query: 295 SLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
                  F+ ADG+     +    I     R +   IE  +    + +            
Sbjct: 271 -----LKFRNADGEFETPVLIHRAIYGSLERFLGVYIEHCNGRFPLCFSPYQIALLPV-- 323

Query: 353 NIKAHDQVCRDACEKIYARLSKVG---CDVFWDDM--GEQIGSQFAVADLLGFPLQVIVG 407
                D    + C ++  +L+        V  D+   G  +G +     +  +   V VG
Sbjct: 324 ----SDPSHLEFCREVAEQLTNGNSDKLRV--DERMMGRSLGKRIRECTMKHYNYMVTVG 377

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + V    + ++ R +   + +S+            
Sbjct: 378 EEEVKSKTLSVRSRGSKDIQHISVPSFRENLLAELD 413


>gi|326503454|dbj|BAJ86233.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326506156|dbj|BAJ91317.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 518

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/416 (17%), Positives = 140/416 (33%), Gaps = 68/416 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P   +  + +      E  +        P   + + L  E    + +  E+  
Sbjct: 65  SGCYILRPWAMEIWELLKEFFDAEIKKLKLKPYYFPLFVTENVLQKEKDHIEGFAPEVAW 124

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   F   I+S+R+LP    Q     R E       +R
Sbjct: 125 VTKSGKSDLEAPIAIRPTSETVMYPYFSKWIRSHRDLPLKCNQWCNVVRWEFSNPTPFIR 184

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T E +     ++   Y                        +  EF+
Sbjct: 185 SREFLWQEGHTVFATKEEADEEVLQILELY----------------------RRIYEEFL 222

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                              S +E++      TS      +   +
Sbjct: 223 A--------------------------VPVSKGRKSEMEKFAGGLYTTS------VEAFI 250

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     + RGI+       G  ++     TF+   G+   V   S+     R +  ++ +
Sbjct: 251 PN----TGRGIQGATSHCLGQNFAKMFDITFENEKGERSMVWQNSWAY-TTRSIGVMVMT 305

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
             D KG++ P  VAP ++ +I +   D      + ACE     L++ G     D      
Sbjct: 306 HGDDKGLVLPPKVAPIQVIVIPVPFKDADTTAIKGACESAVYTLNQAGIRADLDARENYS 365

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G +++  ++ G PL++ +G K +++ +V I  R  G + D+   +++        
Sbjct: 366 PGWKYSQWEMKGVPLRIEIGPKDLANKQVRIVRRDNGAKVDIPSTDLVEQVRVLLD 421


>gi|190348971|gb|EDK41532.2| hypothetical protein PGUG_05630 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 685

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 140/430 (32%), Gaps = 76/430 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +      +  + G      P   S+  L  E    + +  E+  
Sbjct: 212 SGCYILRPNSYHVWEQIQDWFNIQIKKLGVRNAYFPMFVSSRVLEKEKDHIEGFAPEVAW 271

Query: 96  LADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +  +       PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 272 VTKAGNSELEEHIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLR 331

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT + +     K+   Y                              
Sbjct: 332 TREFLWQEGHTVHLTDKEADEQVMKILDLY------------------------------ 361

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                               I  E      +    +  E++    Y  T +         
Sbjct: 362 ------------------TKIYEELLAVPVVKGKKTENEKFAGGNYTTTVEGFI------ 397

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG-SYGIG-AMRVVAAV 328
                  + RGI+     + GT +S   + T +  +G D     G     G + RV+  +
Sbjct: 398 -----GATGRGIQGATSHHLGTNFSKMFNITVENPEGADKPKVYGVQTSWGLSTRVIGVM 452

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFW 381
           + +  D KG++ P  VA  ++ +I +           +   D    I ARL+     V  
Sbjct: 453 VMTHSDNKGLVLPPRVAQTQVVVIPVGLTSKTADDERKGINDGAADIEARLNAADVRVTS 512

Query: 382 DDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D       G +FA  +L G PL+V  G K ++  +V    R  G +  + L E+      
Sbjct: 513 DYRDTYTSGWKFANWELKGVPLRVEFGPKDMAQEQVTAVRRDNGEKYTVKLAELETRIPE 572

Query: 441 RFSN-NRPVL 449
                 + +L
Sbjct: 573 LLETMQKEML 582


>gi|126459705|ref|YP_001055983.1| prolyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
 gi|166980146|sp|A3MV50|SYP_PYRCJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|126249426|gb|ABO08517.1| prolyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
          Length = 487

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 83/438 (18%), Positives = 147/438 (33%), Gaps = 80/438 (18%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R+AEI   +  ++         G Y W P G K   NV A+IR   + TG  E+  P   
Sbjct: 28  REAEIYDVRYPVK---------GAYVWRPYGMKIRRNVEALIRRLHDETGHEEVLFPVFI 78

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
                     Y+ +GKE   +     +        E                        
Sbjct: 79  P---------YEFFGKESEHIRGFEKEVFWVSKGGEGG---------------------- 107

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
                                 +       +              Y  +  RL       
Sbjct: 108 ----------------------ERLVLRPTSETAIMPMVKLWVQDYKDLPLRLYQIVSVF 145

Query: 196 RAES---GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV--E 250
           RAE+    P+           A T       ++  +   +      FD++     I    
Sbjct: 146 RAETKMTHPMIRLREISMFKEAHTVHVDREDAERQVREAVEIYKRIFDEMCLAYMINRRP 205

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            W     A   +  + +   LP+      R +++G + Y GTK++     T+   DG   
Sbjct: 206 DWDKFAGAVYTIAFDTV---LPDG-----RALQIGTVHYLGTKFTEVFEVTYLAPDGSRR 257

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEK 367
                SYGI + R +AA++ +  D  G + P  +AP ++ ++ I   ++       A E+
Sbjct: 258 LAHTTSYGI-SERSIAAMLITHGDDAGTVIPPKLAPIQVVVVPIFYGEEEKGVVMPAAEQ 316

Query: 368 IYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
               L + G  V  D   ++  G +F   +L G PL+V VG + V   +V +  R T  +
Sbjct: 317 AAKALREAGFRVHVDGRDDKTPGWKFYYWELRGVPLRVEVGKRDVEGRQVVVARRDTLAK 376

Query: 427 EDMSLEEVINYASHRFSN 444
             ++++E+++      S 
Sbjct: 377 YAVAVDELVDAVKALLSE 394


>gi|146413278|ref|XP_001482610.1| hypothetical protein PGUG_05630 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 685

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 140/430 (32%), Gaps = 76/430 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +      +  + G      P   S+  L  E    + +  E+  
Sbjct: 212 SGCYILRPNSYHVWEQIQDWFNIQIKKLGVRNAYFPMFVSSRVLEKEKDHIEGFAPEVAW 271

Query: 96  LADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +  +       PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 272 VTKAGNSELEEHIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLR 331

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT + +     K+   Y                              
Sbjct: 332 TREFLWQEGHTVHLTDKEADEQVMKILDLY------------------------------ 361

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                               I  E      +    +  E++    Y  T +         
Sbjct: 362 ------------------TKIYEELLAVPVVKGKKTENEKFAGGNYTTTVEGFI------ 397

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG-SYGIG-AMRVVAAV 328
                  + RGI+     + GT +S   + T +  +G D     G     G + RV+  +
Sbjct: 398 -----GATGRGIQGATSHHLGTNFSKMFNITVENPEGADKPKVYGVQTSWGLSTRVIGVM 452

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFW 381
           + +  D KG++ P  VA  ++ +I +           +   D    I ARL+     V  
Sbjct: 453 VMTHSDNKGLVLPPRVAQTQVVVIPVGLTSKTADDERKGINDGAADIEARLNAADVRVTS 512

Query: 382 DDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D       G +FA  +L G PL+V  G K ++  +V    R  G +  + L E+      
Sbjct: 513 DYRDTYTSGWKFANWELKGVPLRVEFGPKDMAQEQVTAVRRDNGEKYTVKLAELETRIPE 572

Query: 441 RFSN-NRPVL 449
                 + +L
Sbjct: 573 LLETMQKEML 582


>gi|39969493|ref|XP_366137.1| hypothetical protein MGG_10357 [Magnaporthe oryzae 70-15]
 gi|145015163|gb|EDJ99731.1| hypothetical protein MGG_10357 [Magnaporthe oryzae 70-15]
          Length = 566

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 144/434 (33%), Gaps = 74/434 (17%)

Query: 27  LRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVES 83
           L+  MI  ++   G Y   P        +    +E+ +  G  E S P  L S  L  E 
Sbjct: 80  LKAEMIEYYTEISGFYILRPAAMFVWSQIRKWFQEKIDVMGVEEASFPMFLSSKSLEKEK 139

Query: 84  GRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +    DK +       PT E VM   +   I+S+R+LP    Q     
Sbjct: 140 DHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLRLNQWNSVV 199

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +L           
Sbjct: 200 RWEAKQTTPFLRAREFLWQEGHTAHLTEEDAGKEVLEILEHYAGVYEQL----------- 248

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                                     +    +  E++   Y  T
Sbjct: 249 -------------------------------------LAVPVVRGKKTENEKFAGGYYTT 271

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  +   +P N     RGI+       G  +S     T +    +  ++ +     
Sbjct: 272 ------TVEGYIPSNG----RGIQGATSHCLGQNFSKMFDITVEDPKKEKGHLHVWQNSW 321

Query: 320 G-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYAR 371
           G + RV+  ++    D KG+++P  +A  +  LI +                  +++   
Sbjct: 322 GLSTRVIGVMVMIHGDDKGLVFPPRIARTQAVLIPVGITAKTTPEERTAHTAKLDELNKT 381

Query: 372 LSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L   G  V  D         +F   +L G PL++  G K  +  +V    R TG +  ++
Sbjct: 382 LKDAGVRVESDMRDGYTPAWKFNHWELKGVPLRLEFGPKDAAKDQVAFARRDTGEKGSIA 441

Query: 431 LEEVINYASHRFSN 444
           + ++          
Sbjct: 442 IADLATKVPELLET 455


>gi|89100420|ref|ZP_01173283.1| prolyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89084849|gb|EAR63987.1| prolyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 494

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    DN+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 55  GSMIIRPYGYSLWDNIKNELDRRIKETGHENVYMPMFIPESLLQKEKDHIEGFAPEVAWV 114

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +    +  PT E +  + +++ I SYR+LP  + Q     R E   R   +R+
Sbjct: 115 THGGSEELAERLVVRPTSEVLFCEHYKNIIHSYRDLPKLYNQWANVVRWEKTTRP-FLRT 173

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E +     KM   Y                               
Sbjct: 174 LEFLWQEGHTCHATDEDAHEETTKMLDVY------------------------------- 202

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E  +                    +    +  E++               F    
Sbjct: 203 -ADLCENVLAI----------------PVLKGRKTEKEKFAG-----------AKFTYTI 234

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G   + G  ++      +   +G+  +V   S+G+   RV+ A+I   
Sbjct: 235 ESLMHDGKALQTGTSHHLGDGFAKAFGIQYSDREGELQHVHQTSWGL-TTRVIGAMIMVH 293

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D +G+I P  +AP ++ ++ +  H +   D C ++  +L K    V  D   ++ G +F
Sbjct: 294 GDNRGLIIPPRIAPTQLMIVPVAQHKEGVLDFCYELKEKLGKS-FRVGIDSSDKKPGWKF 352

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G PL++  G K + +++V +  R TG +  +  E      +    +
Sbjct: 353 NEYEMKGIPLRLEAGPKDIENNQVVLVRRDTGEKLFVQAEGAEQAIAGLLED 404


>gi|46200191|ref|YP_005858.1| prolyl-tRNA synthetase [Thermus thermophilus HB27]
 gi|81830546|sp|Q72GF9|SYP_THET2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|46197819|gb|AAS82231.1| prolyl-tRNA synthetase [Thermus thermophilus HB27]
          Length = 477

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 75/407 (18%), Positives = 144/407 (35%), Gaps = 70/407 (17%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    +N+  ++      TG      P       L  E+   + +  E+  +     +
Sbjct: 41  PYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGE 100

Query: 103 AMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E V+  ++   I+S+R+LP    Q     R E+R R  + R+ EFL +
Sbjct: 101 ELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFL-RTSEFLWQ 159

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T E ++    +M   Y R+                                  
Sbjct: 160 EGHTAHATREEAEEEVRRMLSIYARLAR-------------------------------- 187

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                           E      I  L +  E++      T+            E     
Sbjct: 188 ----------------EYAAIPVIEGLKTEKEKFAGAVYTTT-----------IEALMKD 220

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  ++      F+  D +  YV   S+G+ + R + A+I +  D +G+
Sbjct: 221 GKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGL-SWRFIGAIIMTHGDDRGL 279

Query: 339 IWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVA 395
           + P  +AP ++ ++ I   +  +   +A + +   L   G  V  DD      G +F   
Sbjct: 280 VLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALQAKGLRVHLDDRDQHTPGYKFHEW 339

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +L G P +V +G K +   +  +  RL G +E + L  +      + 
Sbjct: 340 ELKGVPFRVELGPKDLEQGQAVLASRLGG-KETLPLAALPEALPGKL 385


>gi|28948887|pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanocaldococcus Janaschii
 gi|28948888|pdb|1NJ8|B Chain B, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanocaldococcus Janaschii
 gi|28948889|pdb|1NJ8|C Chain C, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanocaldococcus Janaschii
 gi|28948890|pdb|1NJ8|D Chain D, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanocaldococcus Janaschii
          Length = 459

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 84/416 (20%), Positives = 149/416 (35%), Gaps = 72/416 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   +LP G K       IIR   + +G  E   P L   DL   E+     +  E+  +
Sbjct: 29  GCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWV 88

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                 + D  +   PT E  +  + +  +K + +LP   YQI   FR E +    ++R 
Sbjct: 89  THGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRL 148

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           RE                                               +    +H    
Sbjct: 149 REI----------------------------------------------MTFKEAHTAHS 162

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLN--SIVEQWTAPYAATSDVHNEKLFDS 270
             +  E QV          I      FD +      S   +W     A   +  + +F  
Sbjct: 163 TKEEAENQV-------KEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIF-- 213

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            P+      R +++  +   G  +S      F+   G   Y     YGI + RV+A++I 
Sbjct: 214 -PDG-----RTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGI-SDRVIASIIA 266

Query: 331 SSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
              D KG+I P  VAP ++ ++ +  K  + +  +  ++IY +L      V  DD   + 
Sbjct: 267 IHGDEKGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGK-FRVHIDDRDIRP 325

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +F   ++ G PL++ VG K + + K+ +  R T  +  +   +++       +N
Sbjct: 326 GRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNN 381


>gi|193213223|ref|YP_001999176.1| prolyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
 gi|259511581|sp|B3QPX3|SYP_CHLP8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|193086700|gb|ACF11976.1| prolyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 481

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 152/420 (36%), Gaps = 69/420 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG +    P       +  E+   + +  E   +
Sbjct: 33  GCMVIRPNGYAIWEKMQAALDGMFKETGHVNAYFPMFIPESFIAKEAEHIEGFAPECAVV 92

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E ++   ++  I+SYR+LP    Q     R E+R R   +R+
Sbjct: 93  THGGGEELAEKLYVRPTSETIIWSSYKKWIQSYRDLPLLINQWANVVRWEMRTRL-FLRT 151

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++    PE ++    +M   Y                         + E++ 
Sbjct: 152 TEFLWQEGHTAHADPEEAQEEVIRMINVY----------------------RTFAEEYMA 189

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +                            I+   S  E++    A               
Sbjct: 190 M--------------------------PVIVGKKSESEKFAGADA-----------TYCI 212

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G     G  ++      F+  +G   YV   S+G+ + R++ A+I + 
Sbjct: 213 EAMMQDGKALQAGTSHNLGQNFAKAFDCQFQTKEGVLDYVWATSWGV-STRLIGALIMAH 271

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
            D KG++ P  +A  ++ +I I   D +  R     I   L+K G   F DD      G 
Sbjct: 272 SDDKGLVLPPKLASRQVVIIPILKGDKEEVRAHARFIAKALNKHGISTFVDDSENNSPGW 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE-EVINYASHRFSNNRPVL 449
           +FA  +L G P+++ +G + +++ K  +  R T  + ++ L+ E+        +N +  L
Sbjct: 332 KFAEYELQGIPVRIELGPRDIAEGKCIVARRDTFEKTEVLLDAEMTENIEEILNNIQQNL 391


>gi|325663708|ref|ZP_08152112.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470201|gb|EGC73434.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 492

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 139/412 (33%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 52  GCMVIKPAGYAIWENIQHELDRRFKETGVENVYLPMFIPESLLQKEKDHVEGFAPEVAWV 111

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +   + +   PT E +  D +   I+S+R+LP  + Q     R E   R  + RS
Sbjct: 112 THGGLEPLQERLCVRPTSETLFCDFYAKDIQSHRDLPKVYNQWCSVVRWEKTTRPFL-RS 170

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++     M   Y                               
Sbjct: 171 REFLWQEGHTAHATAEEAEERTIMMLNVYADFCE-------------------------- 204

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                 E      I    +  E++    A  +            
Sbjct: 205 ----------------------EVLAIPVIKGRKTDKEKFAGAEATYT-----------I 231

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FG  ++      +   + K  YV   S+G+   R++ A+I   
Sbjct: 232 ESLMHDGKALQSGTSHNFGDGFAKAFGIQYTDKENKLQYVHQTSWGM-TTRMIGAIIMVH 290

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ +I I+       D   ++   L K G  V  DD  +  G +F
Sbjct: 291 GDNSGLVLPPRIAPVQVMVIPIQQKKDGVLDKAYEVKEVLKKAGLSVKVDDSDKSPGWKF 350

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  ++ G P+++ +G K +      +  R T  +  +  EE+    +     
Sbjct: 351 SEQEMRGIPVRIELGPKDIEAGHAVVVRRDTREKIIVPFEELETKVAEVLDT 402


>gi|242090883|ref|XP_002441274.1| hypothetical protein SORBIDRAFT_09g023590 [Sorghum bicolor]
 gi|241946559|gb|EES19704.1| hypothetical protein SORBIDRAFT_09g023590 [Sorghum bicolor]
          Length = 508

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 74/416 (17%), Positives = 139/416 (33%), Gaps = 68/416 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P   +  + +      E  +        P   + + L  E    + +  E+  
Sbjct: 55  SGCYILRPWAMEIWELLKEFFDAEIKKLKLKPYYFPLFVTENVLQKEKDHIEGFAPEVAW 114

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   F   I+S+R+LP    Q     R E       +R
Sbjct: 115 VTKSGKSELEAPIAIRPTSETVMYPYFSKWIRSHRDLPLRCNQWCNVVRWEFSNPTPFIR 174

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T E +     ++   Y                        +  EF+
Sbjct: 175 SREFLWQEGHTAFATKEEADEEVLQILELY----------------------RRIYEEFL 212

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                              S +E++      TS      +   +
Sbjct: 213 A--------------------------VPVSKGRKSEMEKFAGGLYTTS------VEAFI 240

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     + RGI+       G  ++     TF+   G    V   S+     R +  ++ +
Sbjct: 241 PN----TGRGIQGATSHCLGQNFAKMFDITFENEKGVREMVWQNSWAY-TTRSIGVMVMT 295

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
             D KG++ P  VAP ++ +I +   D      + ACE     L++ G     D      
Sbjct: 296 HGDDKGLVLPPKVAPIQVIVIPVPYKDADTTAIKGACESAVYTLNQSGFRADLDTRENYS 355

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G +++  ++ G PL++ +G K +++ +V I  R  G + D+ +  ++        
Sbjct: 356 PGWKYSHWEMKGVPLRIEIGPKDLANKQVRIVRRDNGAKVDIPVTNLVEEVKVLLD 411


>gi|327262448|ref|XP_003216036.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase-like isoform 2
            [Anolis carolinensis]
          Length = 1611

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 69/424 (16%), Positives = 126/424 (29%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
             G Y   P      + +      E  + G      P   S A L  E      +  E+  
Sbjct: 1143 SGCYILRPWAFAVWEAIKDFFDSEIKKLGVENCYFPMFVSQAALEKEKTHIADFAPEVAW 1202

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1203 VTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR 1262

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ ++   T E +     ++   Y R++                          
Sbjct: 1263 TREFLWQEGHTAFATYEEAAEEVLQILDLYARVYE------------------------- 1297

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 1298 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTVEAFISA---- 1330

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+ G   + G  +S      F+                G   R +  + 
Sbjct: 1331 -------SGRAIQGGTSHHLGQNFSKMFEIVFEDPRTPGEKQYAYQNSWGLTTRTIGVMT 1383

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I          A  +     C +   RL         D
Sbjct: 1384 MIHGDNMGLVLPPRVACVQVVIIPCGITNTLSEADKEALMTKCSEYRKRLLSANIRSRAD 1443

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +  ++ V ++ R TG +   +  E ++   H
Sbjct: 1444 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSNQFVAVR-RDTGEKMTFAENEAVDQLRH 1502

Query: 441  RFSN 444
                
Sbjct: 1503 ILEE 1506


>gi|189217812|ref|NP_001121346.1| glutamyl-prolyl-tRNA synthetase [Xenopus laevis]
 gi|171846443|gb|AAI61719.1| LOC100158438 protein [Xenopus laevis]
          Length = 1499

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 70/451 (15%), Positives = 140/451 (31%), Gaps = 79/451 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +     +++ ++ MI  +   G Y   P      + +     +E  + G    
Sbjct: 1004 EAKKEENLPDWYSQVITKSEMIEYYDVSGCYVLRPWAFAIWEAIKEFFDKEIKKLGVENC 1063

Query: 70   SVPTLQS-ADLWVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKS 124
              P   S A L  E      +  E+  +       +       PT E VM   +   ++S
Sbjct: 1064 YFPMFVSQAALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1123

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ ++   T E +     ++   Y R+
Sbjct: 1124 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATYEEAAEEVLQILDLYARV 1183

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +                                                 E      +  
Sbjct: 1184 YE------------------------------------------------ELLAIPVVKG 1195

Query: 245  LNSIVEQW-TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +  E++    Y  T +                S+R I+     + G  +S      F+
Sbjct: 1196 RKTEKEKFAGGDYTTTVEAFISA-----------SSRAIQGATSHHLGQNFSKMFEIVFE 1244

Query: 304  GADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------- 355
                            G + R + A++    D  G++ P  VA  +I +I          
Sbjct: 1245 DPKTPGLKQYAYQNSWGLSTRTIGAMVMVHADNTGMVLPPRVACVQIIIIPCGITNTLAE 1304

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                     C++   RL  V      D       G +F   +L G P+++ VG + + + 
Sbjct: 1305 EDKDALLKKCDQYLKRLLNVDVRARADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNK 1364

Query: 415  K-VEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + V ++ R  G ++ +  ++           
Sbjct: 1365 QFVAVR-RDNGEKQTIPEDQAETRLKEILEE 1394


>gi|320451068|ref|YP_004203164.1| prolyl-tRNA synthetase [Thermus scotoductus SA-01]
 gi|320151237|gb|ADW22615.1| prolyl-tRNA synthetase [Thermus scotoductus SA-01]
          Length = 477

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 148/414 (35%), Gaps = 70/414 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    +N+  ++      TG      P       L  E+   + +  E+  +     +
Sbjct: 41  PYGYALWENIQGVLDRMFKETGHQNAYFPLFIPMSFLKKEAEHVEGFSPELAVVTHAGGE 100

Query: 103 AMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E V+  ++   IKSYR+LP    Q     R ELR R  + R+ EFL +
Sbjct: 101 ELEEPLAVRPTSETVIGYMWSKWIKSYRDLPQLLNQWGNVVRWELRTRPFL-RTSEFLWQ 159

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T E ++    +M   Y ++    G                             
Sbjct: 160 EGHTAHATREEAEEEVRRMLSIYAKLAREYGA---------------------------- 191

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                                  +  + +  E++      T+            E     
Sbjct: 192 --------------------IPVVEGMKTEKEKFAGAVYTTT-----------IEALMRD 220

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  ++      F+  D +  YV   S+G+ + R + A+I +  D +G+
Sbjct: 221 GKALQSGTSHYLGENFARAFDIKFQDKDLQVKYVHTTSWGL-SWRFIGAIIMTHGDDQGL 279

Query: 339 IWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVA 395
           I P  +AP ++ ++ I   +  +   +A   +  RL + G  V  DD      G +F   
Sbjct: 280 ILPPRLAPIQVVIVPIYREESREKVLEAAFDLKQRLLQAGLRVHLDDRDQHTPGYKFHEW 339

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +L G P ++ +G K +   +  +  RL G +E ++LE +      +       L
Sbjct: 340 ELKGVPFRIELGPKDLEAGEAVLASRLGG-KERLTLEALPTVLPEKLDAFHQAL 392


>gi|119494491|ref|XP_001264141.1| threonyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
 gi|119412303|gb|EAW22244.1| threonyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
          Length = 530

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 145/439 (33%), Gaps = 65/439 (14%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D         L T  I  +S G   +LP G   ++ + + +R +  + G  E+  PT+  
Sbjct: 65  DYRALGTAQDLFTTSI--YSPGSPLFLPNGTHVINRLISFLRTQYLQYGFREVLTPTIYK 122

Query: 77  ADLWVESGRYDSYGKEMLRLADR-----------NDKAMIYGPTHEEVMTDIFRSHIKSY 125
             LW  SG + +Y  +M  +  R            D++    P +      +F+S   SY
Sbjct: 123 RSLWEVSGHWQNYKDDMYEVKGRGATGEADGETGEDESYGLKPMNCPGHCLLFKSQNHSY 182

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  +       R+E+     G+ R R F   D + F    +               +
Sbjct: 183 RELPIRYADFSPLHRNEISGALSGLTRVRRFHQDDGHIFCRPQQIKGE-IASALGFVDMV 241

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               GL    +   + P                E     S +  D          D+   
Sbjct: 242 MTTFGLGPYRLVLSTRP----------------EKDFIGSLELWDSAETQLREALDNSGR 285

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATF 302
             ++ E   A Y    D+   +L D   +  ++S   +++     F    + +       
Sbjct: 286 EWAMNEGDGAFYGPKIDI---QLQDQAGKYHQLSTIQLDMNLPQRFGLEYQVAEGEEDYN 342

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G+   V +     G++    A++    +     WP  ++P +  ++ +   D+   
Sbjct: 343 PATPGRATPVLVHRANFGSLERFLALLI---EQYAGRWPFWLSPRQGIILTVN-QDEAVL 398

Query: 363 DACEKIYARLSKVGCD-----------------------VFWDDMGEQIGSQFAVADLLG 399
              ++  A++S  G                         +  D   + +G +   A  + 
Sbjct: 399 QQAQEAAAKIS--GFRPHVASKDNVTSPKPLSSVDSTYLIDVDTSSQTLGKKIQRAKQMK 456

Query: 400 FPLQVIVGSKFVSDSKVEI 418
           + L  I+G K V+DS + +
Sbjct: 457 YNLIFILGPKDVADSSITV 475


>gi|289192180|ref|YP_003458121.1| prolyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
 gi|288938630|gb|ADC69385.1| prolyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
          Length = 455

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 91/453 (20%), Positives = 165/453 (36%), Gaps = 85/453 (18%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+++  IL++    AEI   +  ++         G   +LP G K       IIR+ 
Sbjct: 1   MEFSEWYSDILEK----AEIYDVRYPIK---------GCGVYLPYGFKIRRYTFEIIRKL 47

Query: 61  QNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMT 115
            + +G  E   P L   DL   E+     +  E+  +        D  +   PT E  + 
Sbjct: 48  LDESGHDETLFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTPLDVKLALRPTSETPIY 107

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
            + +  +K + +LP   YQI   FR E +    ++R RE                     
Sbjct: 108 YMMKLWVKVHTDLPIKVYQIVNTFRYETKHTRPLIRLREI-------------------- 147

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                                     +    +H      +  E QV          I   
Sbjct: 148 --------------------------MTFKEAHTAHSTKEEAEEQV-------KQAISIY 174

Query: 236 NTDFDDIISLN--SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
              FD +      S   +W     A   +  + +F   P+      R +++  +   G  
Sbjct: 175 KKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIF---PDG-----RVMQIATVHNLGQN 226

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +S      F+   G   Y     YGI + RV+A++I    D KG+I P  VAP +I ++ 
Sbjct: 227 FSKTFEILFETPTGGKDYAYQTCYGI-SDRVIASIIAIHGDEKGLILPPIVAPIQIVIVP 285

Query: 354 I--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +  K  ++V  +  +++Y +L      V+ DD   + G +F   ++ G PL++ +G K +
Sbjct: 286 LIFKGKEEVVMEKAKELYEKLKGK-YRVYIDDRDIRPGRKFNDWEIKGVPLRIEIGPKDI 344

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + K+ +  R T  +  +   ++        +N
Sbjct: 345 ENKKITLFRRDTMEKFQVDETQLEEVIEKTLNN 377


>gi|34540714|ref|NP_905193.1| prolyl-tRNA synthetase [Porphyromonas gingivalis W83]
 gi|81417446|sp|Q7MVS7|SYP_PORGI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|34397028|gb|AAQ66092.1| prolyl-tRNA synthetase [Porphyromonas gingivalis W83]
          Length = 493

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 74/430 (17%), Positives = 162/430 (37%), Gaps = 84/430 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   + +    TG +    P       L  E+   + + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLFIPKSFLSREAEHVEGFAKECAVV 95

Query: 97  AD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                               + ++ +I  PT E ++ + +++ I+S+R+LP    Q    
Sbjct: 96  THYRLKANPDGDGVVVDPQAKLEEELIVRPTSETIIWNTYKNWIQSHRDLPILCNQWANV 155

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E+R R  + R+ EFL ++ ++   T E ++    +M   Y                 
Sbjct: 156 VRWEMRTRLFL-RTAEFLWQEGHTAHATKEEAEEEARRMLEVYATFA------------- 201

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                     E++ +                            +  + S  E++      
Sbjct: 202 ---------EEYMAM--------------------------PVVKGVKSANERFAG---- 222

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                   +     E      + ++ G   + G  ++   + TF   DG   +V   S+G
Sbjct: 223 -------AVDTYTIEALMQDGKALQSGTSHFLGQNFAKAFNVTFADKDGNRDFVWATSWG 275

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKV 375
           + + R++ A+I S  D  G++ P  +AP+++ +I I  +++      +   +I   L   
Sbjct: 276 V-STRLMGALIMSHSDDNGLVLPPKLAPYQVVIIPIYRNEEQLAQIDEKATQITQALRAK 334

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +D+   ++ G +FA  +L G P+++ +G++ + ++ +EI  R T  +E + L+ +
Sbjct: 335 GISVKYDNSDNKKPGWKFAEYELKGIPVRLAMGARDLENNTIEIARRDTLTKETVGLDGI 394

Query: 435 INYASHRFSN 444
               +    +
Sbjct: 395 EETVATLLDD 404


>gi|315187358|gb|EFU21114.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6578]
          Length = 477

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 152/420 (36%), Gaps = 69/420 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + + +      TG      P L     L  E+   + +  E+  +
Sbjct: 33  GCMVIRPRGYAIWEKIQSHLDRMFKETGHQNAYFPLLIPESFLHKEAEHVEGFSPELAVV 92

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +  ++ ++  PT E ++  +++  I+SYR+LP    Q     R E R R  + R+
Sbjct: 93  THGGGEALEEPLVVRPTSETIIWSMYKKWIQSYRDLPLLINQWANVVRWEKRTRLFL-RT 151

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M                        +    + E++ 
Sbjct: 152 TEFLWQEGHTAHATREEAEEEALRML----------------------HVYRKFAEEYLA 189

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                             +  E++              +     
Sbjct: 190 --------------------------LPVFYGRKTESEKFAG-----------AVTTYSI 212

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   + G  ++     TF+   G   YV   S+G+ + R++ AVI + 
Sbjct: 213 EAMMQDKKALQAGTSHFLGQNFAKAFDVTFQTQAGSLDYVWATSWGV-STRLIGAVIMAH 271

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGE-QIG 389
            D +G++ P  +AP +  +I I          D  ++++ARL++ G  V  D   +   G
Sbjct: 272 SDNRGLVLPPRIAPTQAVIIPIYTKKTVDQVADYAKRVFARLTEAGLSVEMDLDDQNSPG 331

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +FA  +L G P++V VG + +   K  +  R TG +  +S+  +           +  L
Sbjct: 332 WKFAEWELRGVPIRVEVGPRDMEQEKAVLVRRDTGEKRAVSVSRLPEEIPVLLEEIQKTL 391


>gi|319936200|ref|ZP_08010620.1| prolyl-tRNA synthetase [Coprobacillus sp. 29_1]
 gi|319808774|gb|EFW05307.1| prolyl-tRNA synthetase [Coprobacillus sp. 29_1]
          Length = 479

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 67/414 (16%), Positives = 130/414 (31%), Gaps = 69/414 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G    + + A + ++   TG   + +P L    L   E+   + +  E   +
Sbjct: 39  GFIIYRPYGYALWEMIQAYMDKKFKETGHENVYMPMLIPESLLQKEADHVEGFAPECAVV 98

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                                    + L
Sbjct: 99  T----------------------------------------------------RGGLDNL 106

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF-----I 211
            ++      +       Y K+  SY  +          +R E          EF      
Sbjct: 107 EENLIIRPTSETLFCEHYAKIVNSYRDLPKLYNQWCSVVRWEKTTRPFLRGSEFLWQEGH 166

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +  T E     +   +D    +        +      E+      A      E L    
Sbjct: 167 TIHATEEEARAETMQMLDIYEETSRNLLAIPMVTGKKTERE-KFAGAEETYTIEALMH-- 223

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   + ++ G   YFG  ++      F   D K  YV   S+G+ + R++ A+I  
Sbjct: 224 ------DGKALQSGTSHYFGDGFAKAFGIQFLDKDNKQKYVHQTSWGV-STRLLGAIIMV 276

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++ P  VAP ++ +I I+       D   ++  +L   G  V  D   +  G +
Sbjct: 277 HGDDNGLVLPPRVAPTQVMIIPIQQQKDGVLDKAYELEQQLKAHGIRVKVDATDKSPGWK 336

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-VINYASHRFSN 444
           F+ A++ G PL++ VG + + + +  +  R+ G +  +SL+E +         +
Sbjct: 337 FSEAEMRGIPLRLEVGPRDLENGQCVVAKRVNGEKITLSLDENLSQTLLQLLDD 390


>gi|70996464|ref|XP_752987.1| threonyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66850622|gb|EAL90949.1| threonyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|159131721|gb|EDP56834.1| threonyl-tRNA synthetase [Aspergillus fumigatus A1163]
          Length = 535

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 145/439 (33%), Gaps = 65/439 (14%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D         L T  I  +S G   +LP G   ++ + + +R +  + G  E+  PT+  
Sbjct: 70  DYRALGTAQDLFTTSI--YSPGSPLFLPNGTHVINRLISFLRTQYLQYGFREVLTPTIYK 127

Query: 77  ADLWVESGRYDSYGKEMLRLADR-----------NDKAMIYGPTHEEVMTDIFRSHIKSY 125
             LW  SG + +Y  +M  +  R            D++    P +      +F+S   SY
Sbjct: 128 RSLWEVSGHWQNYKDDMYEVKGRGATGEADGETGEDESYGLKPMNCPGHCLLFKSQNHSY 187

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  +       R+E+     G+ R R F   D + F    +               +
Sbjct: 188 RELPIRYADFSPLHRNEISGALSGLTRVRRFHQDDGHIFCRPQQIKGE-IASALGFVDMV 246

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               GL    +   + P                E     S +  D          D+   
Sbjct: 247 MTTFGLGPYRLVLSTRP----------------EKDFIGSLELWDSAEAQLREALDNSGR 290

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATF 302
             ++ E   A Y    D+   +L D   +  ++S   +++     F    + +       
Sbjct: 291 EWAMNEGDGAFYGPKIDI---QLQDQAGKYHQLSTIQLDMNLPQRFGLEYQVAEGEEDYN 347

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G+   V +     G++    A++    +     WP  ++P +  ++ +   D+   
Sbjct: 348 PATPGRATPVLVHRANFGSLERFLALLI---EQYAGRWPFWLSPRQGIILTVN-QDEAVL 403

Query: 363 DACEKIYARLSKVGCD-----------------------VFWDDMGEQIGSQFAVADLLG 399
              ++  A++S  G                         +  D   + +G +   A  + 
Sbjct: 404 QQAQEAAAKIS--GYRPLVAGQDNATSPKPLSSVDSTYLIDVDTSSQTLGKKIQRAKQMK 461

Query: 400 FPLQVIVGSKFVSDSKVEI 418
           + L  I+G K V+DS + +
Sbjct: 462 YNLIFILGPKDVADSSITV 480


>gi|268317819|ref|YP_003291538.1| prolyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
 gi|262335353|gb|ACY49150.1| prolyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
          Length = 496

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 157/447 (35%), Gaps = 85/447 (19%)

Query: 27  LRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           +R   +  +S   G    LP G    +N+ A++      TG      P       L  E+
Sbjct: 20  VRAAKLADYSPVRGCMIILPNGYALWENMRAVLDRMFKETGHENAYFPLFIPQSFLAKEA 79

Query: 84  GRYDSYGKEMLRLAD-----------------RNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
              + + KE   +                   + ++ +I  PT E ++ D F   I+S+R
Sbjct: 80  EHVEGFAKECAVVTHSRLKIDEKGQLIPDPESKLEENLIVRPTSETIIWDAFSRWIQSWR 139

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           +LP    Q     R E+R R  + R+ EFL ++ ++   T E +     ++   Y     
Sbjct: 140 DLPILINQWANVVRWEMRTRLFL-RTMEFLWQEGHTAHATREEAIEEALRILDIYTTFA- 197

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
                                 E++ +                            I  + 
Sbjct: 198 ---------------------EEYMAM--------------------------PVIQGVK 210

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +  E++              +     E      R ++ G   + G  ++      F+  +
Sbjct: 211 TPSERFAG-----------AVDTYCIEALMQDGRALQAGTSHFLGQNFAKAFDCKFQNQN 259

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRD 363
            +  YV   S+G+ + R++ A++ +  D +G++ P  +AP ++ +I I  +D       +
Sbjct: 260 NELEYVWATSWGV-STRLIGALVMTHSDDQGLVLPPRLAPTQVVIIPIFRNDVEKSAVLE 318

Query: 364 ACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              +I   L   G  V  D     + G +F   ++ G P++V +G + V    VE+  R 
Sbjct: 319 QAGRIERELKDAGFTVKLDARETHRPGWKFNEYEVQGVPVRVAIGPRDVEQGTVELARRD 378

Query: 423 TGIREDMSLEEVINYASHRFSNNRPVL 449
           T  +E +  E +         + +  L
Sbjct: 379 TRTKETVPQEGLAERVRTLLDDIQQNL 405


>gi|320586315|gb|EFW98994.1| threonyl-tRNA synthetase [Grosmannia clavigera kw1407]
          Length = 524

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 86/482 (17%), Positives = 155/482 (32%), Gaps = 85/482 (17%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D      +  L T  I  +S G   +LP G +  + +   +R++  R G  E+  PT+  
Sbjct: 76  DHRDLGVQQELFTTSI--YSPGSPIFLPNGARVFNRLVDFLRKQYVRYGFQEVITPTIYK 133

Query: 77  ADLWVESGRYDSYGKEMLRLA-------------------DRNDKAMIYGPTHEEVMTDI 117
             LW +SG  ++Y  +M  +                       +      P +      I
Sbjct: 134 KALWAKSGHLENYADDMFTVTSASLATGERRGEGGATPGPQDLEDEYGLKPMNCPGHCLI 193

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F +   SYR+LP  +       RDEL     G+ R R F   D + F   P+  +     
Sbjct: 194 FAAQRHSYRDLPIRYADFSPLHRDELSGALSGLTRVRRFHQDDGHVFCR-PDQVEAEIRA 252

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                   +  LGL    +   + P+ G                +  + D  D    +  
Sbjct: 253 TLDFVRHTYDVLGLGPYRLVLSTRPLDGH---------------LIGTADDWDAAEDALR 297

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              D   S  ++     A Y    DV    L DS  +  + +   ++    F    +++L
Sbjct: 298 RALDHSHSAWTVSPGDGAFYGPKIDV---VLRDSDGKEHQTATVQLD----FQLPKRFAL 350

Query: 297 PMSATF---KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                    K        V +    +G++  + A++   +D     WP  + P +++++ 
Sbjct: 351 TYQEAVPKTKAEVEAARPVLIHRAVLGSVERLMALLIEHYD---GRWPFWLNPRQVAVLT 407

Query: 354 IKAHDQVCRDACEKIYA-------------------RLSKVGCDVFWDDMGEQIGSQFAV 394
           +    +        + A                    L      V  DD    +  +   
Sbjct: 408 VND-SEPVVAFARHVQAVLNGTAETQDVPLGSLSAPTLLAA---VDLDDSARTLPLKVRE 463

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEI----------KHRLTGIREDMSLEEVINYASHRFSN 444
           A   G+   V+VG K V+   V +            R T    DM  EE++     + S 
Sbjct: 464 ARSKGYGAVVVVGPKDVARGTVAVDLSGIPVQEQAERSTK-SVDMKPEELLALLLQKAST 522

Query: 445 NR 446
            +
Sbjct: 523 YQ 524


>gi|226355442|ref|YP_002785182.1| prolyl-tRNA synthetase [Deinococcus deserti VCD115]
 gi|226317432|gb|ACO45428.1| putative Proline--tRNA ligase (prolyl-tRNA synthetase) [Deinococcus
           deserti VCD115]
          Length = 499

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 74/408 (18%), Positives = 143/408 (35%), Gaps = 69/408 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL----AD 98
           P G    +N+   + +    TG   +  PTL     +  E+   + +  E+  +     +
Sbjct: 56  PYGSALWENIVRWLDDRFKATGHESLVFPTLIPMGFIMKEADHVEGFAPELFTVSKIGTE 115

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
              +  +  PT E ++  ++   + SYR+LPF  YQ    FR ELR     +R+ EF   
Sbjct: 116 ELAEPYVMRPTSETIIGHMWSGWLNSYRDLPFLHYQWGSVFRAELR-TKAFLRTSEFFWH 174

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++       ++    +M   Y                          HEF        
Sbjct: 175 EGHTAHADEPEARGEVRQMLDIY--------------------------HEF-------- 200

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
               C        +  E T  +                          +     E     
Sbjct: 201 ----CRDVLALPVVRGEKTASERFAG---------------------AVATYSIEGMMRD 235

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  +S      F+  + K+ Y    S+ I + R++ A+I +  D  G+
Sbjct: 236 GKALQSGTSHYLGQNFSRAFDVKFQTREQKEEYAHTTSWAI-SSRIIGAIIMTHGDDFGL 294

Query: 339 IWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVA 395
           I P  +AP ++ +I +   D         E++   L  +G  V  D       G ++   
Sbjct: 295 IMPPRIAPIQVVVIPVGRKDNFDAMVQEAEQLAGELRALGLRVKVDKRDGVTNGFKYNDW 354

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +L G P+++ +G + +    V +K R +  +E +   E ++  + R  
Sbjct: 355 ELKGVPVRIELGPRDLEQGVVVVKGRNSEEKETLERAEAVSGMTARLD 402


>gi|298373192|ref|ZP_06983182.1| proline--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298276096|gb|EFI17647.1| proline--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 493

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 67/412 (16%), Positives = 132/412 (32%), Gaps = 48/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A + +    TG      P       L  E+   + + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQAQLDKMFKETGHSNAYFPLFIPKSYLSREADHVEGFAKECAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +   +       +    + E              
Sbjct: 96  TH-----------------------YRLKNSPDGKGVTVDPAAKLEEELIVRPTS----- 127

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                           +Y     SY  +   +   +  +R E        + EF+     
Sbjct: 128 ----------ETIIWSTYKNWIQSYRDLPILVNQWANVVRWEMRTRLFLRTAEFL--WQE 175

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ M+      N    D       +       +A        L     E   
Sbjct: 176 GHTAHATREEAMEEATKMLNVYA-DFAERYMALPVVKGIKSANERFAG-ALETFCIEAMM 233

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++      F   D K  YV   S+G+ + R++ A+I +  D  
Sbjct: 234 QDGKALQAGTSHFLGQNFAKAFDVQFVNKDNKLEYVWATSWGV-STRLMGALIMAHSDNN 292

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ ++ I  + +      E+I+    RL  +G  V +DD   ++ G +F
Sbjct: 293 GLVLPPRLAPIQVVIVPIYKNAEQLAAVAERIHPVVDRLRSLGVSVKFDDSDNKKPGWKF 352

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  +L G P+++ +G + + +  VE+  R    ++ M LE +  Y       
Sbjct: 353 AEYELKGVPVRLALGGRDLENGTVEVFRRDKLEKQTMPLEGIEQYIVSLLDE 404


>gi|260590692|ref|ZP_05856150.1| proline--tRNA ligase [Prevotella veroralis F0319]
 gi|260537353|gb|EEX19970.1| proline--tRNA ligase [Prevotella veroralis F0319]
          Length = 493

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 79/444 (17%), Positives = 165/444 (37%), Gaps = 85/444 (19%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+++  +  Q +  G     P G    + + A + +    TG      P L     L  E
Sbjct: 22  LVIKADLAEQSAVRGCMVIKPYGYAIWEKMQAQLDKMFKETGVQNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIKS 124
           +     + KE   +                    + ++ +I  PT E ++ + +++ I S
Sbjct: 82  AEHVKGFAKECAVVTHYRLKATDNGNAVEVDPNAKLEEELIIRPTSETIIWNTYKNWIHS 141

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+LP    Q     R E+R R   +R+ EFL ++ ++   T E ++     M       
Sbjct: 142 WRDLPLMCNQWCNVMRWEMRTRP-FLRTSEFLWQEGHTAHATREEAEKEAQTML------ 194

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                                      V AD  E  +                    +  
Sbjct: 195 --------------------------HVYADFAEKWLA----------------VPVVQG 212

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
           + S  E++              L     E      + ++ G   + G  ++     T+  
Sbjct: 213 VKSETERFAG-----------ALDTYTIEAMMQDGKALQSGTSHFLGQNFAKSFDVTYLN 261

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            D K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I   ++  ++ 
Sbjct: 262 KDNKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPKIAPIQVVIVPIFKGEEQLKEL 320

Query: 365 CEKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             K+      L ++G  V +DD   ++ G +FA  +L G P+++ +G + + ++ +E   
Sbjct: 321 TAKLQPVIDSLRELGITVKYDDTDNKRPGFKFADYELKGVPVRLAMGGRDLENNTIEFMR 380

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
           R T  +E +S + ++        +
Sbjct: 381 RDTLEKESVSFDGIVERVKALLDD 404


>gi|313206166|ref|YP_004045343.1| prolyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|312445482|gb|ADQ81837.1| prolyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|315023150|gb|EFT36163.1| prolyl-tRNA synthetase [Riemerella anatipestifer RA-YM]
 gi|325336389|gb|ADZ12663.1| Prolyl-tRNA synthetase [Riemerella anatipestifer RA-GD]
          Length = 491

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 74/431 (17%), Positives = 158/431 (36%), Gaps = 85/431 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG------------- 84
           G     P G    + +   + ++   TG      P      L+                 
Sbjct: 32  GCMVIKPYGYAIWEKMRDELDKKFKETGHENAYFPIFVPKSLFEAEEKNAEGFAKECAVV 91

Query: 85  -RY------DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
             Y      ++  K M+    + ++ +I  PT E ++ + +++ ++SYR+LP    Q   
Sbjct: 92  THYRLKTDPENPQKLMVDPEAKLEEELIVRPTSEAIIWNTYKNWVQSYRDLPILINQWAN 151

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E+R R   +R+ EFL ++ ++   T E +     +M   Y                
Sbjct: 152 VVRWEMRTRL-FLRTAEFLWQEGHTAHATKEEAIAETEQMLNVY---------------- 194

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                  D + +F+                              +  + S  E++     
Sbjct: 195 ------ADFAEKFMA--------------------------VPVVRGIKSPSERFAG--- 219

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E      + ++ G   + G  ++      F   +GK  Y    S+
Sbjct: 220 --------AEETYCIEALMQDGKALQAGTSHFLGQNFAEAFDVKFTNKEGKIEYAWATSW 271

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSK 374
           G+ + R++ A+I S  D  G++ P S+AP ++ ++ I   ++  +   +   ++ ++L  
Sbjct: 272 GV-STRLMGALIMSHSDDNGLVLPPSLAPIQVVIVPIFKGEEQLKQIDEVAYELQSKLKA 330

Query: 375 VGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +G  V +D+    + G +FA  ++ G P+++ +G++ + +  VEI  R T  +E   L+ 
Sbjct: 331 LGISVKYDNRDTHKPGWKFAEYEMKGVPVRIAMGARDLENKTVEIARRDTLSKEVKPLDN 390

Query: 434 VINYASHRFSN 444
           +  Y       
Sbjct: 391 IEVYIQELLEE 401


>gi|307353929|ref|YP_003894980.1| prolyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
 gi|307157162|gb|ADN36542.1| prolyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
          Length = 477

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 153/429 (35%), Gaps = 78/429 (18%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG+Y W P G         I+RE  +R    E   P L    +   E+     + 
Sbjct: 30  VRYPVKGLYVWFPHGFAIRKATYGILRELLDR-DHEETLFPLLIPEYEFMKEAEHIKGFE 88

Query: 91  KEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           +E+  + +    + D  +   PT E  +  ++   ++S+ +LP   YQI   FR E +  
Sbjct: 89  EEVYWVTNGGLSKLDVPLALRPTSETAIYPMYALWVRSHADLPIKLYQIVNTFRYETKHT 148

Query: 147 FGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             ++R RE    K+A++   T E +K         Y   + RL +  I  +         
Sbjct: 149 RPLIRLREITSFKEAHTVHATWEEAKEQVEDAIALYKEFYERLCVPVIMSK--------- 199

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                                                         W     A   +  +
Sbjct: 200 -------------------------------------------RPDWDKFPGADYTIAAD 216

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            +    P+ +      ++VG   + G  ++      ++  +G+  Y     YGI + R +
Sbjct: 217 AVM---PDGR-----TLQVGTAHHLGDNFAKTFEICYEDENGEQQYAFQTCYGI-SERCI 267

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDD 383
           AA+I    D KG++ P  +AP ++ ++ I      +    A + I A +   G  V  DD
Sbjct: 268 AALISIHGDDKGLVLPPEIAPVQVVIVPIIMKKMAEEVTQAAKDIEAEMKAAGLRVKIDD 327

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-------VIN 436
              + G+++   ++ G PL++ +G + + +  V    R  G +  +  E         ++
Sbjct: 328 RPLRPGAKYYHWEMRGTPLRLEIGPRDLENGVVMAADRF-GEKTSIPRENLKEGVRAFMD 386

Query: 437 YASHRFSNN 445
               +  + 
Sbjct: 387 QFKEQLKSR 395


>gi|110667672|ref|YP_657483.1| prolyl-tRNA synthetase [Haloquadratum walsbyi DSM 16790]
 gi|121689813|sp|Q18JG3|SYP_HALWD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|109625419|emb|CAJ51843.1| proline--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 512

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 134/418 (32%), Gaps = 68/418 (16%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKE 92
           +   G     P      + V + +     +TG      P       L  E    + +  E
Sbjct: 36  EGMSGFIVTRPRAYGLWERVQSYLDTRFKQTGVQNAYFPLFIPEGYLEREKEIVEGFDPE 95

Query: 93  MLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  +       +       PT E ++       I+SYR+LP    Q     R E      
Sbjct: 96  VAWVEQAGRNELEERLAVRPTSESIIAPYLSQWIRSYRDLPLRVNQWTSVVRWEATETKP 155

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R++EFL ++ ++   T                             RA+          
Sbjct: 156 FFRTKEFLWQEGHTAHAT-----------------------------RAD---------- 176

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                A+T          + D            I  L     +      A +    E L 
Sbjct: 177 ---AWAETMLRLNQYESTYEDLLA---------IPVLQGAKPEHDKFPGADTTTTVEALM 224

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
              P+ K      ++     Y GT+++     T+   D         S+G+ + R + A+
Sbjct: 225 ---PDGK-----SVQGATSHYLGTEFADAFDITYTDTDETSRVAHTTSWGL-SWRALGAL 275

Query: 329 IESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           I +  D +G++ P +VAP ++ ++ I      +   +  E +   L   G  V  DD  +
Sbjct: 276 IMTHSDNQGLVLPPTVAPEQVVIVPIWQTETKERVLEYAEDVANNLDDAGIRVELDDRDD 335

Query: 387 -QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              G +F   +L G PL+  +G    ++  V + HR  G        E++     +F 
Sbjct: 336 QNPGFKFNEWELKGVPLRAEIGPDEATEGTVTLIHRPDGESITAERSEIVETVQEQFD 393


>gi|298245368|ref|ZP_06969174.1| prolyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297552849|gb|EFH86714.1| prolyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 483

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 148/420 (35%), Gaps = 70/420 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +++ +++ +    TG +    P L     L  E+   + +  E+  +
Sbjct: 39  GCMIIRPYGYALWEHIQSLLDQRFKDTGVMNAYFPLLIPRSFLEKEAEHVEGFAPELAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +  ++ +   PT E ++   +   ++SYR+LP    Q     R E R     +R+
Sbjct: 99  TRGGGEELEEPLAIRPTSETIIGHSYSRWVQSYRDLPLLINQWNNVMRWEKRTTL-FLRT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++     M                                  V
Sbjct: 158 SEFLWQEGHTAHRTLEEAEERTRMMLE--------------------------------V 185

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             D  E +           IP   T+ +                          L     
Sbjct: 186 YRDFAENEAAIP------VIPGRKTENEKFAG---------------------ALRTYSI 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++       G  ++      F  ADG+  Y    S+G+ + R++  +I   
Sbjct: 219 EALMGDGKALQSATSHNLGQNFAKSFDIQFLDADGERKYCATTSWGL-STRMIGGIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            D  G+I P  +APF++ ++ I   DQ      +A E++   L      V  DD     G
Sbjct: 278 GDPSGLILPPRLAPFQVVIVPIWRKDQDRAVVFEAVERLQKMLKGK-VRVKVDDSDNTPG 336

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            ++   ++ G PL++ +G + V ++ V +  RL   +E +S++ +      +    +  L
Sbjct: 337 WKYNEWEMRGVPLRLEIGPRDVQNNNVVLVSRLDRSKEFVSIDNLETRLPEKLDEIQKAL 396


>gi|305664978|ref|YP_003861265.1| prolyl-tRNA synthetase [Maribacter sp. HTCC2170]
 gi|88707390|gb|EAQ99635.1| prolyl-tRNA synthetase [Maribacter sp. HTCC2170]
          Length = 491

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 150/430 (34%), Gaps = 84/430 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A + +    TG      P       L  E+   + + KE   +
Sbjct: 33  GCMVIKPYGFAIWEKMQAGLDKMFKETGHENAYFPLFIPKSYLSKEASHVEGFAKECAVV 92

Query: 97  AD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                               + ++ +I  PT E ++ D +R  I+SYR+LP    Q    
Sbjct: 93  THYRLKNDESGKGIIVDPDAKLEEELIVRPTSETIIWDTYRKWIQSYRDLPLLINQWANV 152

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E+R R   +R+ EFL ++ ++   T + +     +M                     
Sbjct: 153 VRWEMRTRL-FLRTAEFLWQEGHTAHATEKEAIEEAEQMM-------------------- 191

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                        V AD  E  +                    I  + +  E++      
Sbjct: 192 ------------HVYADFAENHMA----------------VPVIKGIKTESERFAG---- 219

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                   +     E      + ++ G   + G  ++      F   +GK  YV   S+G
Sbjct: 220 -------AIETYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFATKEGKQEYVWATSWG 272

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKV 375
           + + R++ A++ +  D  G++ P  +AP ++ ++ I    +      EK   +   L   
Sbjct: 273 V-STRLMGALVMTHSDDSGLVLPPKLAPIQVVIVPIYRGLEQLDAISEKVGPLVKELRAK 331

Query: 376 GCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +D     + G +F   +L G P+++ +G + + +   E+  R T  +  +  +EV
Sbjct: 332 GISVKYDSRDTHKPGFKFNEYELKGVPVRLAIGQRDMENGTYEVARRDTFEKVTIPEDEV 391

Query: 435 INYASHRFSN 444
           ++       +
Sbjct: 392 VSKIEFLLED 401


>gi|224014080|ref|XP_002296703.1| prolyl-trna synthetase [Thalassiosira pseudonana CCMP1335]
 gi|220968558|gb|EED86904.1| prolyl-trna synthetase [Thalassiosira pseudonana CCMP1335]
          Length = 521

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 136/417 (32%), Gaps = 68/417 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P   K  + +      +  + G      P   S D L  E    + +  E+  
Sbjct: 59  SGCYILRPWSYKIWELIQDWFNIQIKKLGVENSYFPMFVSQDRLEKEKDHVEGFAPEVAW 118

Query: 96  LADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D  +       PT E +M   F   I+S+R+LP    Q     R E +     +R
Sbjct: 119 VTRSGDGELAQPIAVRPTSETIMYPAFADWIRSHRDLPLKLNQWSNVVRWEFKDPTPFLR 178

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++   + E +     +    Y R++                          
Sbjct: 179 TREFLWQEGHTAHASYEDADVMVMQALDLYRRVYE------------------------- 213

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                  E      I    +  E++   +  T       +   +
Sbjct: 214 -----------------------ELLAIPVIPGYKTEKEKFAGGHQTT------TVEAYI 244

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P    VS R I+          +       ++   G+       S+G+   R +  +I  
Sbjct: 245 P----VSGRAIQGATSHNLWQNFGKMFDINYQDEKGETKIAWQTSWGL-TTRTIGVMIMV 299

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
             D  G++ P  VAP +  +I I +     +     CE I   L + G     DD     
Sbjct: 300 HGDDTGLVLPPMVAPQQAVIIPIVSKSCPLENLSGYCEDILKSLEEKGIRAKLDDRLIYN 359

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            G ++A  +  G P+++ VG + +   +  +  R  G + D+S++ + +    +   
Sbjct: 360 PGWKYAHWEQKGVPIRIEVGPRDLEKRQARMVVRFGGEKIDVSVDTIASDIEKKLKE 416


>gi|67517326|ref|XP_658540.1| hypothetical protein AN0936.2 [Aspergillus nidulans FGSC A4]
 gi|40746809|gb|EAA65965.1| hypothetical protein AN0936.2 [Aspergillus nidulans FGSC A4]
 gi|259488776|tpe|CBF88493.1| TPA: threonyl-tRNA synthetase (AFU_orthologue; AFUA_1G16210)
           [Aspergillus nidulans FGSC A4]
          Length = 523

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 143/436 (32%), Gaps = 58/436 (13%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
            D         L T  I  +S G   +LP G   ++ + + +R +  + G  E+  PT+ 
Sbjct: 58  ADYRALGTAQDLFTTSI--YSPGSPLFLPNGTHIINKLISFLRTQYLQYGFREVLTPTIY 115

Query: 76  SADLWVESGRYDSYGKEMLRLADR-----------NDKAMIYGPTHEEVMTDIFRSHIKS 124
              LW  SG + +Y  +M  +  R            +++    P +      +F+S   S
Sbjct: 116 KQSLWEVSGHWQNYKDDMYEVRGRGAMGDTEGEAGENESYGLKPMNCPGHCLLFKSQNHS 175

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  +       R+E+     G+ R R F   D + F    +               
Sbjct: 176 YRELPIRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIFCRPQQIKGE-IKSALGFVDL 234

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    GL    +   + P                E          D          D   
Sbjct: 235 VMTTFGLGPYRLVLSTRP----------------EKDFIGDLQLWDSAEAQLREALDQTG 278

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSAT 301
              +I E   A Y    D+   +L D   +  ++S   +++     F    + +      
Sbjct: 279 KNWAINEGDGAFYGPKIDI---QLQDQAGKYHQLSTIQLDMNLPRRFELEYQVAEGEEDY 335

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
                G+   V +     G++    A++    +     WP  ++P +  ++ +   D V 
Sbjct: 336 NPATPGRATPVLIHRANFGSLERFLALLI---EQYSGRWPFWLSPRQGIILTVNQDDAVV 392

Query: 362 R---DACEKI--YARLSKV---GCD-----------VFWDDMGEQIGSQFAVADLLGFPL 402
           +   +A  +I  +  L +    G             +  D   + +  +   A  + + L
Sbjct: 393 KQAHEAAAQISGFKALDQNAADGIPQPLSATDSTFLIDVDTSSQTLSKKIQRAKQMKYNL 452

Query: 403 QVIVGSKFVSDSKVEI 418
             I+G K +++ ++ +
Sbjct: 453 IFILGPKDLAEGRISV 468


>gi|322382352|ref|ZP_08056259.1| prolyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153705|gb|EFX46080.1| prolyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 481

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 72/453 (15%), Positives = 158/453 (34%), Gaps = 90/453 (19%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM----LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
            S++++ +++    D       LM    +R  M+ +         P G +  +N   I+ 
Sbjct: 18  FSQWYIDVIK--KAD-------LMSYSPVRGCMVFK---------PDGYEIWENCQRILD 59

Query: 59  EEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEV 113
           +    TG      P       +  E    + +  E+  + +    + ++ +   PT E +
Sbjct: 60  DMFKETGHRNAYFPLFIPESFFQKEKEHVEGFNPELPWVTEAGGEKLEERLAVRPTSETM 119

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           +  ++   I SYR+LP    Q     R E R     +R+ EFL                 
Sbjct: 120 VGHMYAEWINSYRDLPLLINQWANVVRWEKR-TLPFLRTSEFLW---------------- 162

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                        + G  +    A+                +T +          D+   
Sbjct: 163 -------------QEGHTAHEDEAD-------------ARKETMQMLEIYRTFVEDYLA- 195

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                   I    +  E++              +     E      + ++ G   Y GT 
Sbjct: 196 -----IPVITGQKTPSEKFAG-----------AIDTYSIEAMMKDGKAVQAGTSHYLGTN 239

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           ++      F   + +  +V   S+G+ + R++ A+I +  D +G++ P  VAP ++ +I 
Sbjct: 240 FAEAFDIKFLNRENQHEFVHTTSWGV-STRLIGAMIMAHGDDRGLVMPPKVAPTQVIMIP 298

Query: 354 IK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I              ++   + K G  V  D   +  G +F   ++ G P++V +G + +
Sbjct: 299 IGPAKTRDQVLAKTYELQTEIKKAGFRVRVDAREQSPGWKFNEYEMRGVPVRVELGPRDM 358

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + +V +  R+TG ++ ++ + ++   +     
Sbjct: 359 ENGQVILVSRVTGEKKVVAQDNLVEEITRLLDE 391


>gi|284037200|ref|YP_003387130.1| prolyl-tRNA synthetase [Spirosoma linguale DSM 74]
 gi|283816493|gb|ADB38331.1| prolyl-tRNA synthetase [Spirosoma linguale DSM 74]
          Length = 490

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 144/437 (32%), Gaps = 88/437 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   + +    TG      P       L  E+   + + KE   +
Sbjct: 33  GCMVIKPYGFAIWEKMQRALDDMFKETGHQNAYFPLFIPKSFLSKEASHVEGFAKECAVV 92

Query: 97  AD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                               + ++ +I  PT E V+   +++ I+SYR+LP    Q    
Sbjct: 93  THYRLKNAEDGSGVIVDPEAKLEEELIVRPTSETVIWSTYKNWIQSYRDLPLLINQWANV 152

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E+R R  + R+ EFL                                          
Sbjct: 153 VRWEMRTRIFL-RTAEFL------------------------------------------ 169

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF--DDIISLNSIVEQWTAPY 256
                     E      T E   F ++  +D              +    +  E++    
Sbjct: 170 --------WQEGHTAHATAEEAKFETRQMLDIYAQFAEEWMALPVVKGTKTANERFAG-- 219

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                           E      + ++ G   + G  ++      F     +  YV   S
Sbjct: 220 ---------ADDTLCIEAMMQDGKALQAGTSHFLGQNFAKAFDVQFLNKQNQLDYVWGTS 270

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLS 373
           +G+ + R++ A+I +  D  G++ P  +AP ++ ++ I   ++       KI      L 
Sbjct: 271 WGV-STRLMGALIMAHSDDDGLVLPPKLAPIQVVIVPIYRSEEQLELLSAKIKPLVQELR 329

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           K G  V +DD    + G +FA  +L G P+++ +G + + +  VEI  R    +E +  E
Sbjct: 330 KAGVSVKYDDSDANKPGWKFAEYELRGVPVRLAMGGRDLENGTVEIARRDLKTKETVPFE 389

Query: 433 EVINYASHRFSNNRPVL 449
            +  +  +   + +  +
Sbjct: 390 GLTEHIKNLLDDIQQTI 406


>gi|291518260|emb|CBK73481.1| prolyl-tRNA synthetase, family I [Butyrivibrio fibrisolvens 16/4]
          Length = 479

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 148/424 (34%), Gaps = 68/424 (16%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESG 84
           ++  +I   S KG     P G    +N+   +      TG   + +P      L   E  
Sbjct: 27  VKADLIAYSSVKGCMIIKPDGYAIWENIQHELDRRFKETGVQNVYMPMFIPESLLQVEKD 86

Query: 85  RYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E+  +         + +   PT E +  D ++  I S+R+LP  + Q     R
Sbjct: 87  HVEGFAPEVAWVTHGGLNPLQERLCVRPTSETLFCDFYKDIIHSHRDLPKVYNQWCSVVR 146

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E   R   +RSREFL ++ ++   T E ++    +M   Y                   
Sbjct: 147 WEKETRP-FLRSREFLWQEGHTAHATAEEAEERTVQMLNLYADFCE-------------- 191

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                                             E      +    +  E++    A  +
Sbjct: 192 ----------------------------------EVLAMPVVRGQKTDKEKFAGAEATYT 217

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                       E      + ++ G    FG  +S P    +   + +  YV   S+G+ 
Sbjct: 218 -----------IEALMHDGKALQSGTSHNFGQNFSKPFGIQYTDKNNQLQYVHQTSWGM- 265

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R++ A+I    D  G++ P  +AP ++ +I I+   +   +   ++  +L K      
Sbjct: 266 TTRLIGAIIMVHGDDSGLVLPPRIAPTQVVVIPIQQKKEGVLEKAGEVCEKLGKT-MRAK 324

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  +  G +F+ A++ G P++V +G K +   K  +  R T  + +  L++V    + 
Sbjct: 325 LDDSDKSPGWKFSEAEMRGIPVRVELGPKDIEAGKCVLVRRDTREKIECPLDQVETKVAE 384

Query: 441 RFSN 444
               
Sbjct: 385 LLET 388


>gi|189197599|ref|XP_001935137.1| threonyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187981085|gb|EDU47711.1| threonyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 542

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/496 (16%), Positives = 155/496 (31%), Gaps = 94/496 (18%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D    +    L   +   +S G    LP G      + + +R +  + G  E+  P +  
Sbjct: 72  DHRTLAQTHNLF--ITSPYSPGSPLILPNGAYVFQKLQSFLRAQYPQFGFQEVITPIIYK 129

Query: 77  ADLWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTDIFRSHIKS 124
             LW +SG +++Y ++M  +  R             D      P +      +FR  IKS
Sbjct: 130 KSLWEKSGHWENYAEDMFSVQGRGTTAQIPEAEGGEDGEFGLKPMNCPGHCLLFRDEIKS 189

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP          R+E+     G+ R R F   DA+ F    +       +       
Sbjct: 190 YRDLPVRLADFSALHRNEISGALTGLTRVRRFHQDDAHIFCRPDQILAE-IEQTLKFVAM 248

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   GL    +   + P                +     + +  D       T  ++I 
Sbjct: 249 VYRTFGLGPYKLLLSTRP----------------KDNFIGTVEEWDRAEEQLTTALNNIG 292

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
           S  +I E   A Y    D+    L DS  +  + +   ++    F    ++ L   A+ +
Sbjct: 293 SEWAINEGDGAFYGPKIDII---LKDSNGKEHQTATIQLD----FQLPQRFDLQYQASPE 345

Query: 304 G-ADGKDHYVQMG-----SYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLIN 353
               G    +  G        +   R +   IE       +     +P  ++P    +++
Sbjct: 346 ELEAGSQTSMDAGLDPTLRRPVIVHRAIYGSIERFMALLIEHYVGKYPFWLSPRPAIILS 405

Query: 354 IKAHDQVCRDAC--EKIYARLSKVG-------------------CDVFWDDMGEQIGSQF 392
           +  + +V       + + + L                         V  D     +  + 
Sbjct: 406 LNNNAEVLEHVSRVQSVLSGLKAADPPSQVSTSSPKPLPLSTIQLPVDVDTSSRPLAKKI 465

Query: 393 AVADLLGFPLQVIVGSKFVSDSKV------------EIKH----RLTGIRE-------DM 429
           A A    +   ++VG   V    V              +     R T + E       +M
Sbjct: 466 AEARSKKYNHIIVVGGNEVQTGSVNMQVVNQPNPEATFRELQEARGTEVTEKEQRKGANM 525

Query: 430 SLEEVINYASHRFSNN 445
           SL +   Y   R +N+
Sbjct: 526 SLNDARTYF-ERLANS 540


>gi|149641567|ref|XP_001511623.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 1260

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 124/424 (29%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
             G Y   P      + +      E  + G      P   S A L  E      +  E+  
Sbjct: 792  SGCYILRPWAYSIWEAIKDFFDAEIKKLGVENCYFPMFVSQAALEREKTHIADFAPEVAW 851

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 852  VTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLR 911

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 912  TREFLWQEGHSAFATYEEAAEEVLQILDLYAKVYE------------------------- 946

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 947  -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTVEAFISA---- 979

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+     + G  +S      F+                G   R +  + 
Sbjct: 980  -------SGRAIQGATSHHLGQNFSKMFEIIFEDPKTPGEKQFAYQNSWGLTTRTIGVMT 1032

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIKAHD-------QVCRDACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I     +       +     C +   RL      V  D
Sbjct: 1033 MVHGDNMGLVLPPRVASVQVVVIPCGITNSLSEEDREALIKKCNEYRKRLLSANVRVRVD 1092

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + + +S+ V ++ R TG +  +   E       
Sbjct: 1093 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNSQFVAVR-RDTGDKITIVENEAETKLKT 1151

Query: 441  RFSN 444
                
Sbjct: 1152 ILEE 1155


>gi|331092516|ref|ZP_08341338.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400737|gb|EGG80340.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 480

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 129/412 (31%), Gaps = 66/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   +LP G    + + A + +    TG   + +P L   +L   E    + +  E+   
Sbjct: 39  GCMVYLPNGYAIWEKIQADLDKRFKETGVENVYLPMLIPENLLQKEKDHIEGFAPEV--- 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                             +      E L
Sbjct: 96  -------------------------------------------------AWVTHGGNEPL 106

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +       +       ++K   SY  +          +R E        S EF+     
Sbjct: 107 QERMCIRPTSETLFCDHWSKTVQSYRDLPKIWNQWCSVLRWEKTTRPFLRSREFLWQ--- 163

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS----LP 272
                        +    E T     I  + I E    P  A     +EK   +      
Sbjct: 164 -----EGHTIHATYEEAEERTILMQKIYKDFIEESLAIPLVAGKKTDSEKFAGAEDTYTV 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++     +FG+ ++      +   + + H V   S+G+   R++ A+I   
Sbjct: 219 EALMHDGKALQAATSHFFGSGFADAFDIKYLDKNNELHSVYETSWGL-TTRMIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP +  +I I  H +   +   ++   L   G  V  D   +  G +F
Sbjct: 278 GDDSGLVLPPRIAPVQTRVIPIAQHKEGVLEKATELMNTLKAAGYAVNMDSSDKSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  ++ G P ++ +G K + +++V +  R T  +  +SL+E+          
Sbjct: 338 SEQEMQGIPTRIEIGPKDIENNQVVVVRRDTREKIVVSLDEITTKLGEILET 389


>gi|255535772|ref|YP_003096143.1| prolyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255341968|gb|ACU08081.1| Prolyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
          Length = 491

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/431 (17%), Positives = 151/431 (35%), Gaps = 85/431 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    + +   + +    TG      P      L+  E    + + KE   +
Sbjct: 32  GCMVIKPYGYAIWEKMRDEMDKRFKETGHENAYFPIFIPKSLFEAEEKNAEGFAKECAVV 91

Query: 97  AD-------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                                + ++ +I  PT E ++ + +++ ++SYR+LP    Q   
Sbjct: 92  THYRLKTDPNDPKKLVVDPEAKLEEELIVRPTSEAIIWNTYKNWVQSYRDLPILINQWAN 151

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E+R R   +R+ EFL ++ ++   T + +     KM   Y                
Sbjct: 152 VVRWEMRTRL-FLRTAEFLWQEGHTAHATRDEALEETEKMLDVY---------------- 194

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                  D +  F+                              I  + +  E++     
Sbjct: 195 ------ADFTENFMA--------------------------IPVIRGIKTESERFAG--- 219

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E      + ++ G   + G  +       F   +GK  +    S+
Sbjct: 220 --------ADETYCIEALMQDGKALQAGTSHFLGQNFGKAFDVKFTNREGKIEHAWGTSW 271

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSK 374
           G  + R+V A+I +  D  G++ P S+AP ++ ++ I   ++           + A+L  
Sbjct: 272 GT-STRLVGALIMTHSDDLGLVLPPSLAPIQVVIVPIFKGEEQLSQIDAVAYDLQAKLKA 330

Query: 375 VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V +D+  E + G +FA  +L G P+++ +G++ + +  VEI  R    +E   LE 
Sbjct: 331 KGISVKYDNRTENKPGWKFAEYELKGVPIRIAMGARDLENKTVEIARRDNLTKETQPLEG 390

Query: 434 VINYASHRFSN 444
           + NY       
Sbjct: 391 IENYIEELLKT 401


>gi|48478436|ref|YP_024142.1| prolyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|74579482|sp|Q6KZA3|SYP_PICTO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|48431084|gb|AAT43949.1| prolyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 466

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 83/415 (20%), Positives = 157/415 (37%), Gaps = 69/415 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G+  WLP G K +  ++ IIR+  +     E+S P L +      E      +  E+  +
Sbjct: 30  GMNVWLPYGLKIMRLIDNIIRDNVDNKSFQEVSFPVLITRSQLETEFEHIKGFENEIYWV 89

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                ++ D  +   PT E  M  +F   I+S+++LP   YQI   +R E +     +R 
Sbjct: 90  TKGGSEKLDIELALRPTSESAMYTMFPLWIRSHQDLPLKIYQIVSVYRYETKHTRSFIRV 149

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           RE    +A++  +    ++   ++                                   +
Sbjct: 150 REIHFFEAHTAHVDYGDAERQMSEYMD--------------------------------I 177

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            +   E    C    +D                  +   W     A   +  + L  S  
Sbjct: 178 WSSIAE--KLCLPYNID------------------MRPDWDKFPGAKYTLAFDTLMPS-- 215

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  R +++G I  +G  ++      +   +G   YV   ++G+ + R++AAVI   
Sbjct: 216 ------GRSLQIGTIHEYGENFARNYDIKYLDINGDLKYVSQTTFGL-SERLLAAVIGIH 268

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
            D  G+I P S+AP +  +I I     +   D   KI + L  +      D       G 
Sbjct: 269 GDDTGLILPASIAPVQAIIIPIPGKSFKEVLDYSGKILSMLKDINVRAEIDSRENYTPGY 328

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++   ++ G PL++ +GS+ +  S V +  RL   R ++S++E IN   +  + +
Sbjct: 329 KYNDWEMRGVPLRIEIGSREMESSTVTVVSRLNKKRLNISIKE-INNIKNMLNEH 382


>gi|330935757|ref|XP_003305117.1| hypothetical protein PTT_17864 [Pyrenophora teres f. teres 0-1]
 gi|311318063|gb|EFQ86830.1| hypothetical protein PTT_17864 [Pyrenophora teres f. teres 0-1]
          Length = 528

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 140/445 (31%), Gaps = 70/445 (15%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D    +    L   +   +S G    LP G      + + +R +  + G  E+  P +  
Sbjct: 58  DHRTLAQTHNLF--ITSPYSPGSPLILPNGAYVFQKLQSFLRAQYPQFGFQEVITPIIYK 115

Query: 77  ADLWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTDIFRSHIKS 124
             LW +SG +++Y ++M  +  R             D      P +      +FR  IKS
Sbjct: 116 KSLWEKSGHWENYAEDMFSVQGRGTTAQIPEAEGGEDGEFGLKPMNCPGHCLLFRDEIKS 175

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP          R+E+     G+ R R F   DA+ F    +       +       
Sbjct: 176 YRDLPVRLADFSALHRNEISGALTGLTRVRRFHQDDAHIFCRPDQILAE-IEQTLKFVAM 234

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           ++   GL    +   + P                      + +  D       T  ++I 
Sbjct: 235 VYRTFGLGPYKLLLSTRPKDS----------------FIGTVEEWDRAEEQLTTALNNIG 278

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
           S  +I E   A Y    D+    L DS  +  + +   ++    F    ++ L   A+ +
Sbjct: 279 SEWAINEGDGAFYGPKIDII---LKDSNGKEHQTATIQLD----FQLPQRFDLQYQASPE 331

Query: 304 G-ADGKDHYVQMG-----SYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLIN 353
               G    +  G        +   R +   IE       +     +P  ++P   ++++
Sbjct: 332 ELEAGSQTSMDAGLDQTLRRPVIVHRAIYGSIERFMALLIEHYAGKYPFWLSPRPATILS 391

Query: 354 IKAHDQVCRDAC--EKIYARLSKVG-------------------CDVFWDDMGEQIGSQF 392
           +  + +V       + + + L                         V  D     +  + 
Sbjct: 392 LNDNAEVLEHVSRVQSVLSGLKAADPPEQVSTSLPKPLPLSTIQLPVDVDTSSRPLAKKI 451

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVE 417
           A A    +   ++VG   V    V 
Sbjct: 452 AEARTKKYNHIIVVGLNEVQTGSVN 476


>gi|288801214|ref|ZP_06406669.1| proline--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331825|gb|EFC70308.1| proline--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 493

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 153/443 (34%), Gaps = 52/443 (11%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E  + AE  S     L+++  +  Q +  G     P G    + +   + +    TGA
Sbjct: 5   LKELTKRAENYSQWFNDLVIKADLAEQSAVRGCMVIKPYGYAIWEKMQQQLDKMFKETGA 64

Query: 67  IEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
                P L     L  E+   + + KE   +                          +  
Sbjct: 65  QNAYFPLLIPKSFLSREAEHVEGFAKECAVVTH-----------------------YRLK 101

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            +       +    R E               ++      +     ++Y     S+  + 
Sbjct: 102 NSESGAGVVVDPSARLE---------------EELIIRPTSETIIWNTYKNWIKSWRDLP 146

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                    MR E        + EF+     G T     ++ ++      +         
Sbjct: 147 LMCNQWCNVMRWEMRTRPFLRTSEFL--WQEGHTAHATKEEAVEEARKMLSVYAT-FAEK 203

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
              V        + S+     L     E      + ++ G   + G  ++     TF   
Sbjct: 204 WMAVPVLQG-VKSESEKFAGALDTYTIEAMMQDGKALQSGTSHFLGQNFAKSFDVTFLNK 262

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ +I I   ++      
Sbjct: 263 ENKAEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPKLAPIQVVIIPIAKGEEQLSAIT 321

Query: 366 EKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           EK+    ++L + G  V +DD   ++ G +FA  +L G P+++++G + +  + VEI  R
Sbjct: 322 EKLQPVISKLRENGISVKFDDSDNKRPGFKFADYELKGVPVRLVMGGRDLESNTVEIMRR 381

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E +SL  +  +      N
Sbjct: 382 DTLEKETVSLNGIAEHIIQLLDN 404


>gi|255523430|ref|ZP_05390399.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296184712|ref|ZP_06853123.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255512888|gb|EET89159.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296050494|gb|EFG89917.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 478

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 147/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P      +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMIIRPYAYAMWENIQGDLDRRFKETGHENVYMPMFIPEGLLQKEKDHVEGFAPEVAWV 98

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               ++ +       PT E +  + +   ++SY +LP  + Q     R E   R  + R+
Sbjct: 99  TQGGNEELTERLCVRPTSETLFCEHYAKTVQSYNDLPKLYNQWCSVVRWEKTTRPFL-RT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL  + ++   T E S+    +M                                  V
Sbjct: 158 TEFLWNEGHTVHATQEESEEETIRMLN--------------------------------V 185

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E  +                    I    +  E++       +            
Sbjct: 186 YADHVEQMLAI----------------PVIRGEKTEKERFAGAIGTYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++      FGT ++   +  +   +GK  YV   S+GI   R++ A+I   
Sbjct: 219 EALMHDGKALQAATSHNFGTNFAEAFNMQYTDKNGKLQYVHQTSWGI-TTRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G+  P  +AP ++ ++ I  H +   +   ++ AR+SK+   V  DD  +  G +F
Sbjct: 278 GDDSGLKLPPRIAPIQVVIVPIAQHKEGVLEKAAELKARISKI-ARVKVDDSDKMPGWKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  ++ G P+++ VG K +  ++V +  R  G +  +S++E+         +
Sbjct: 337 AEYEMKGVPIRLEVGPKDIEKNQVVLVRRDNGEKISVSMDEIETKIPSLLDD 388


>gi|327262446|ref|XP_003216035.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase-like isoform 1
            [Anolis carolinensis]
          Length = 1524

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/424 (16%), Positives = 126/424 (29%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
             G Y   P      + +      E  + G      P   S A L  E      +  E+  
Sbjct: 1056 SGCYILRPWAFAVWEAIKDFFDSEIKKLGVENCYFPMFVSQAALEKEKTHIADFAPEVAW 1115

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1116 VTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR 1175

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ ++   T E +     ++   Y R++                          
Sbjct: 1176 TREFLWQEGHTAFATYEEAAEEVLQILDLYARVYE------------------------- 1210

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 1211 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTVEAFISA---- 1243

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+ G   + G  +S      F+                G   R +  + 
Sbjct: 1244 -------SGRAIQGGTSHHLGQNFSKMFEIVFEDPRTPGEKQYAYQNSWGLTTRTIGVMT 1296

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I          A  +     C +   RL         D
Sbjct: 1297 MIHGDNMGLVLPPRVACVQVVIIPCGITNTLSEADKEALMTKCSEYRKRLLSANIRSRAD 1356

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +  ++ V ++ R TG +   +  E ++   H
Sbjct: 1357 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSNQFVAVR-RDTGEKMTFAENEAVDQLRH 1415

Query: 441  RFSN 444
                
Sbjct: 1416 ILEE 1419


>gi|188994851|ref|YP_001929103.1| prolyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
 gi|259511612|sp|B2RJG1|SYP_PORG3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|188594531|dbj|BAG33506.1| prolyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
          Length = 493

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 162/430 (37%), Gaps = 84/430 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   + +    TG +    P       L  E+   + + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLFIPKSFLSREAEHVEGFAKECAVV 95

Query: 97  AD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                               + ++ +I  PT E ++ + +++ I+S+R+LP    Q    
Sbjct: 96  THYRLKANPDGDGVVVDPQAKLEEELIVRPTSETIIWNTYKNWIQSHRDLPILCNQWANV 155

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E+R R  + R+ EFL ++ ++   T E ++    +M   Y                 
Sbjct: 156 VRWEMRTRLFL-RTAEFLWQEGHTAHATKEEAEEEARRMLEVYATFA------------- 201

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                     E++ +                            +  + S  E++      
Sbjct: 202 ---------EEYMAM--------------------------PVVKGVKSANERFAG---- 222

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                   +     E      + ++ G   + G  ++   + TF   DG   +V   S+G
Sbjct: 223 -------AVDTYTIEALMQDGKALQSGTSHFLGQNFAKAFNVTFADKDGNRDFVWATSWG 275

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKV 375
           + + R++ A+I S  D  G++ P  +AP+++ ++ I  +++      +   +I   L   
Sbjct: 276 V-STRLMGALIMSHSDDNGLVLPPKLAPYQVVIVPIYRNEEQLAQIDEKATQIIQALRAK 334

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +D+   ++ G +FA  +L G P+++ +G++ + ++ +EI  R T  +E + L+ +
Sbjct: 335 GISVKYDNSDNKKPGWKFAEYELKGVPVRLAMGARDLENNTIEIARRDTLTKETVGLDGI 394

Query: 435 INYASHRFSN 444
               +    +
Sbjct: 395 EETVATLLDD 404


>gi|321248511|ref|XP_003191154.1| proline-tRNA ligase [Cryptococcus gattii WM276]
 gi|317457621|gb|ADV19367.1| proline-tRNA ligase, putative [Cryptococcus gattii WM276]
          Length = 740

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/433 (15%), Positives = 141/433 (32%), Gaps = 73/433 (16%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           +L+  M+  +   G Y   P        +     +E  + G  +   P   S+  L  E 
Sbjct: 254 LLKGEMLDYYDISGCYILRPWSFSIWQIIQNWFDDEIKKLGVQDCYFPMFVSSARLEKEK 313

Query: 84  GRYDSYGKEMLRLADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +        ++ +   PT E VM   +   I S+R+LP    Q     
Sbjct: 314 DHIEGFAPEVAWVTKAGSSDLEEHIAIRPTSETVMYPYYAKWINSHRDLPLKLNQWNSVV 373

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  L    +      +   Y                  
Sbjct: 374 RWEFKNPQPFLRTREFLWQEGHTAFLDKADADKEVLDILELYR----------------- 416

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                           IP + ++ +               Y  T
Sbjct: 417 ---------------------KVYEDILAVPVIPGKKSEKEKFA---------GGDYTTT 446

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            +                + RGI+     + G  +S     T +  D     +       
Sbjct: 447 VEGFIP-----------TTGRGIQAATSHHLGQNFSKMFDITVESPDKSQGRLYAYQNSW 495

Query: 320 G-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-----AHDQVCRDACEKIYARLS 373
           G + R +  ++    D +G++ P  VA  +++++ +        +Q   DAC K+   L 
Sbjct: 496 GLSTRSLGVMVMVHGDDQGLVLPPRVALQQVAIVPVGLSKGEGKNQPIYDACLKLERELV 555

Query: 374 KVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDMSL 431
             G     D   G   G +F   ++ G PL++ +G + ++++  + ++ R    +  M L
Sbjct: 556 AAGIRAKADLREGYTPGWKFNDWEMRGVPLRLELGPRDIANNSTLSVR-RYDNHKAPMPL 614

Query: 432 EEVINYASHRFSN 444
            ++ N       +
Sbjct: 615 SDIGNTVRTYLDD 627


>gi|88802133|ref|ZP_01117661.1| prolyl-tRNA synthetase [Polaribacter irgensii 23-P]
 gi|88782791|gb|EAR13968.1| prolyl-tRNA synthetase [Polaribacter irgensii 23-P]
          Length = 492

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 79/436 (18%), Positives = 158/436 (36%), Gaps = 85/436 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG      P      L+  E    + + KE   +
Sbjct: 33  GCMVIKPYGFAIWEKMQAELDRMFKETGHQNAYFPLFVPKSLFEAEEKNAEGFAKECAVV 92

Query: 97  AD-------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                                + ++ ++  PT E ++   ++  I+SYR+LP    Q   
Sbjct: 93  THYRLQNDPDNPGKLRVDPDAKLEEELVVRPTSEAIIWSTYKGWIQSYRDLPLLINQWAN 152

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E+R R  + R+ EFL ++                             G  +   RA
Sbjct: 153 VVRWEMRTRLFL-RTAEFLWQE-----------------------------GHTAHTTRA 182

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           E              + +  + Q   +    DF           +    S  E++     
Sbjct: 183 E-------------AITEAQQMQDIYATFAEDFMA------MPVVKGAKSDSERFA---G 220

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           A   +  E L            + ++ G   + G  ++      F   +GK  YV   S+
Sbjct: 221 AEDTLTIEAL--------MQDGKALQAGTSHFLGQNFAKAFDVKFTSKEGKKEYVWATSW 272

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSK 374
           G+ + R++  +I +  D  G++ P  +AP ++ ++ I   +   +   +K+      L  
Sbjct: 273 GV-STRLIGGLIMTHSDDSGLVLPPKLAPIQVVIVPIYKDETQLQAISDKVAMFVKELRA 331

Query: 375 VGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V +DD    + G++FA  +L G P+++ +GS+ + +  VE+  R T  ++ ++ +E
Sbjct: 332 KGASVKFDDRDTYRPGAKFAEYELKGVPVRIAIGSRDLENGTVEVARRDTFEKQTVAQDE 391

Query: 434 VINYASHRFSNNRPVL 449
           V+++        +  L
Sbjct: 392 VVSFVLDLLEKIQQNL 407


>gi|308464804|ref|XP_003094666.1| CRE-PARS-2 protein [Caenorhabditis remanei]
 gi|308247063|gb|EFO91015.1| CRE-PARS-2 protein [Caenorhabditis remanei]
          Length = 470

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 114/457 (24%), Positives = 189/457 (41%), Gaps = 70/457 (15%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           H++++  G I    KG YS LPLGQ+ +D +  I+  E  + GA+++ +P + +  LW +
Sbjct: 23  HRMLIENGFILPTGKGFYSLLPLGQRVIDKLCRILDTEFQKAGAMKIGMPIVGTKTLWDK 82

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRD 141
           + R+D+ G EM++L DR    +   PT EE+ T++  S         P   YQI  KFRD
Sbjct: 83  TKRWDAMGTEMIKLEDRQKAPLCLQPTAEEMCTELIASLPPLKKSQFPVMIYQIGDKFRD 142

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL------------- 188
           E+ PRFG+MRSR+FLMKD Y+F    E S+ +Y K+   Y +IF +              
Sbjct: 143 EMNPRFGLMRSRQFLMKDMYTFSTDQEASRETYRKICRVYEKIFGQQLQLGGDLIKPISG 202

Query: 189 --------GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                         + A+SG  GG +SHE+ + ++  E  V                   
Sbjct: 203 QNRLNLILNYSLFQVEADSGIHGGHISHEYHLRSNLDEDFVNLCDSC------------- 249

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIEVGHIFYFGTKYSLPM 298
                          +  + DV   K   +     + S +   +E+ H F+ GTKYS  +
Sbjct: 250 -------------GTFNKSEDVTTLKKCPNCDSAHQKSRKVSSVEIAHTFHLGTKYSETI 296

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH- 357
            A F+G            +GIG  R++ A ++     +  +          + I +K   
Sbjct: 297 GAKFQGKPLDMC-----CFGIGVSRLLPATVDLLSCSEKAMRLPRAIAPFDAAIIVKKSL 351

Query: 358 -DQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVI---VGSKFV- 411
              V  +      +R  K G     DD  E   G +   A+ LG P  ++   V  + + 
Sbjct: 352 MSNVIVEMTSSSASRYLKGGI--LLDDRIEMSAGRRIHEANRLGIPFIIVLANVTERSLV 409

Query: 412 -SDSKVEI-----KHRLTGIREDMSLEEVINYASHRF 442
                +E+     K         M+L+  +++     
Sbjct: 410 TQKPVIEVFTTHPKSEEPCDHGPMTLDRFVSFVQSSL 446


>gi|121700783|ref|XP_001268656.1| threonyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
 gi|119396799|gb|EAW07230.1| threonyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
          Length = 532

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 147/439 (33%), Gaps = 65/439 (14%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D         L T  +  +S G   +LP G   ++ + + +R +  + G  E+  PT+  
Sbjct: 67  DYRALGTAQDLFTTSV--YSPGSPLFLPNGTHVINRLISFLRTQYLQYGFREVLTPTIYK 124

Query: 77  ADLWVESGRYDSYGKEMLRLADR-----------NDKAMIYGPTHEEVMTDIFRSHIKSY 125
             LW  SG + +Y  +M  +  R            D++    P +      +F+S   SY
Sbjct: 125 RSLWEVSGHWQNYKDDMYEVRGRGATGEADGEAGEDESYGLKPMNCPGHCLLFKSQNHSY 184

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R LP  +       R+E+     G+ R R F   D + F    +               +
Sbjct: 185 RELPIRYADFSPLHRNEVSGSLSGLTRVRRFHQDDGHIFCRPQQIKGE-IASALGFVDMV 243

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               GL    +   + P                E     S +  D          D+   
Sbjct: 244 MTTFGLGPYRLVLSTRP----------------EKDFIGSLELWDSAEAQLREALDNSGR 287

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             ++ E   A Y    D+   +L D   +  ++S   +++     FG +Y +        
Sbjct: 288 EWAMNEGDGAFYGPKIDI---QLQDQAGKYHQLSTIQLDMNLPQRFGLEYQVAEGEEDYD 344

Query: 305 A--DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               G+   V +     G++    A++    +  G  WP  ++P +  ++ +   D+   
Sbjct: 345 PATPGRATPVLVHRANFGSLERFLALLI---EQYGGRWPFWLSPRQGIILTVN-QDEAVL 400

Query: 363 DACEKIYARLSKVGCD-----------------------VFWDDMGEQIGSQFAVADLLG 399
               +  A+LS  G                         +  D   + +G +   A  + 
Sbjct: 401 TQAHEAAAQLS--GFRPLVAGQNDAKTPRPLSSVDSTFLIDVDTSSQTLGKKIQRAKQMK 458

Query: 400 FPLQVIVGSKFVSDSKVEI 418
           + L  I+G K V+DS + +
Sbjct: 459 YNLIFILGPKDVADSSITV 477


>gi|171691298|ref|XP_001910574.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945597|emb|CAP71710.1| unnamed protein product [Podospora anserina S mat+]
          Length = 551

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/425 (16%), Positives = 136/425 (32%), Gaps = 72/425 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVESGRYDSYGKEMLR 95
            G +   P      + +     E     G  E + P  L S  L  E    + +  E+  
Sbjct: 76  SGFFVMRPNTMYIWNTIRKWFNERIEAAGVEECNFPMFLSSTSLQKEKDHVEGFAPELAW 135

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +K +       PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 136 VTKAGEKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLKLNQWVSVVRWEAKQTVPFLR 195

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REF+ ++ ++  ++ E +     ++   Y  I+ +L                       
Sbjct: 196 AREFMWQEGHTAFVSEEQAGKEVLEILELYAGIYEQL----------------------- 232

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                         +    +  E++   Y  T       +   +
Sbjct: 233 -------------------------LAVPVVRGKKTEAEKFAGGYYTT------TVEGYI 261

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIE 330
           P N     RGI+       G  +S     T +    K   + +     G + RV+  ++ 
Sbjct: 262 PSNG----RGIQGATSHCLGQNFSKMFDITVEDPTNKGQKIHVWQNSWGLSTRVIGVMVM 317

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDD 383
              D KG++ P  +A  +  LI +           +   D   ++ A L K G     D 
Sbjct: 318 IHGDDKGLVLPPRIAKTQAILIPVGLTAKTTPEDKEKHLDRMYELLAILKKAGVRTEIDT 377

Query: 384 M-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             G     +F   ++ G P+++  G K  +   V    R TG +  + + E+        
Sbjct: 378 REGYTPAWKFNDWEMKGVPVRLEFGPKDAAKDVVSFARRDTGEKGTIPIGELTTKVPELL 437

Query: 443 SNNRP 447
              + 
Sbjct: 438 ETIQQ 442


>gi|224541864|ref|ZP_03682403.1| hypothetical protein CATMIT_01036 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525214|gb|EEF94319.1| hypothetical protein CATMIT_01036 [Catenibacterium mitsuokai DSM
           15897]
          Length = 479

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/397 (15%), Positives = 129/397 (32%), Gaps = 58/397 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G    + + + + +    TG   + +P L    L   E    + +  E   +
Sbjct: 39  GFIIYRPYGYALWEQIQSYLDKRFKETGHQNVYMPMLIPESLLNKEKDHVEGFAPECAVV 98

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                                    + L
Sbjct: 99  T----------------------------------------------------KGGLDDL 106

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +       +       Y K+  SY  +  +       +R E          EF+     
Sbjct: 107 EEHLIVRPTSETLFCEHYAKIVNSYRDLPKKYNQWCSVVRWEKTTRPFLRGSEFLWQ--- 163

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
               +  +++            +++       +   T            +   ++ E   
Sbjct: 164 EGHTIHATEEEARSETLMMRDIYEETAKELLAIPMLTGRKTEREKFAGAEETYTI-EALM 222

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   YFG  ++   + TF   D K  +V   S+G+ + R++ A+I    D  
Sbjct: 223 HDGKALQSGTSHYFGQGFAKAFNMTFLDKDNKLKHVYQTSWGV-STRLLGAIIMVHGDDN 281

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G++ P  +AP ++ +I I+       +  ++I A+L   G  V  D   +  G +F+ A+
Sbjct: 282 GLVLPPRLAPTQVVIIPIQQKKAGVLEKADEIAAQLKAAGMRVSVDASDKSPGWKFSEAE 341

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G P+++ VG + + +    +  R  G++  M L+E
Sbjct: 342 MRGIPVRIEVGPRDIENGHCVVVKRNDGVKTQMDLDE 378


>gi|296230065|ref|XP_002760549.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase [Callithrix
            jacchus]
          Length = 1540

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/451 (16%), Positives = 135/451 (29%), Gaps = 79/451 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ +  MI  H   G Y   P      + +      E  + G    
Sbjct: 1045 EAKKEENLADWYSQVITKAEMIEYHDVSGCYILRPWAYAIWEAIKDFFDAEIKKLGVENC 1104

Query: 70   SVPTLQSA-DLWVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +       +       PT E VM   +   ++S
Sbjct: 1105 YFPMFVSQGALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQS 1164

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T E +     ++   Y +I
Sbjct: 1165 HRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATIEEAAEEVLQILDLYAQI 1224

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +                                                 E      +  
Sbjct: 1225 YE------------------------------------------------ELLAIPVVKG 1236

Query: 245  LNSIVEQW-TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +  E++    Y  T +                S R I+ G   + G  +S      F+
Sbjct: 1237 RKTEKEKFAGGDYTTTVEAFISA-----------SGRAIQGGTSHHLGQNFSKMFEIMFE 1285

Query: 304  GADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------- 355
                            G   R +  +     D  G++ P  VA  ++ +I          
Sbjct: 1286 DPKTPGEKQFAYQNSWGLTTRTIGVMTMIHGDNMGLVLPPRVACVQVVVIPCGITNALSE 1345

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD- 413
               +     C     RL  V   V  D       G +F   +L G P+++ VG + + + 
Sbjct: 1346 EDKEALMAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNC 1405

Query: 414  SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              V ++ R TG +  +S  E          +
Sbjct: 1406 QFVAVR-RDTGEKLTVSENEAETKLQAILED 1435


>gi|88602429|ref|YP_502607.1| prolyl-tRNA synthetase [Methanospirillum hungatei JF-1]
 gi|114152211|sp|Q2FLY5|SYP_METHJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|88187891|gb|ABD40888.1| prolyl-tRNA synthetase [Methanospirillum hungatei JF-1]
          Length = 478

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/422 (19%), Positives = 152/422 (36%), Gaps = 73/422 (17%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG+Y W P G      V  I+RE  +R    E   P L    +   E+     + 
Sbjct: 30  VRYPVKGLYVWFPFGFGIRKRVYGILRELLDR-DHEETLFPLLIPEPEFMKEAEHIKGFE 88

Query: 91  KEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            E+  +        D  +   PT E  +  ++   ++S+ +LP   YQI   FR E +  
Sbjct: 89  NEVYWVTHGGTTPLDIKLALRPTSETAIYPMYALWVRSHADLPIKVYQIVNTFRYETKHT 148

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
             ++R RE                                                    
Sbjct: 149 RPLIRLREITSF----------------------------------------------KE 162

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD--DIISLNSIVEQWTAPYAATSDVHN 264
           +H      +  E QV       +  I      +D  +I  L S    W     A   +  
Sbjct: 163 AHTVHATWEDAERQV-------EDAIARYREFYDRLNIPVLISKRPDWDKFPGADYTIAV 215

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           + +    P+      R +++G + + G  +S   S  ++   G+  Y     YGI + R 
Sbjct: 216 DTIM---PDG-----RTLQIGTVHHLGDHFSKTFSIQYEDTKGQQQYCHQTCYGI-SERS 266

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWD 382
           +AA+I    D +G++ P  VAP +I ++ +  K  ++    A E +   L   G  V  D
Sbjct: 267 IAALISMHGDDRGLMLPPEVAPVQIVIVPVIMKKREEEIMQAAELLEKELQNAGYRVKID 326

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               + G+++   ++ G PL++ +G + + +  V    R  G +E +   ++I   + + 
Sbjct: 327 TRDLRPGAKYYYWEMRGVPLRLEIGPRDLDNGVVMGVLRSGG-KESLPRADIIAEVNRKM 385

Query: 443 SN 444
           + 
Sbjct: 386 TE 387


>gi|325958767|ref|YP_004290233.1| prolyl-tRNA synthetase [Methanobacterium sp. AL-21]
 gi|325330199|gb|ADZ09261.1| Prolyl-tRNA synthetase [Methanobacterium sp. AL-21]
          Length = 469

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 90/453 (19%), Positives = 183/453 (40%), Gaps = 86/453 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  IL+E    AEI   +  ++         G++ WLP G K   +   I++   +
Sbjct: 4   FSEWFHNILEE----AEIIDTRYPVK---------GMHVWLPQGFKIRKHTLEILKTILD 50

Query: 63  RTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
           +    E+  P L    +L  E+     + +E+  +        +K +   PT E  M  +
Sbjct: 51  K-DHEEVMFPLLIPEDELAKEAIHVKGFEEEVYWVTHGGLTELNKKLALRPTSETAMYPM 109

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNK 176
           F   ++++ +LP  +YQ+   FR E +    ++R RE    K+A++   + E ++    +
Sbjct: 110 FSLWVRNHSDLPMRYYQVVNTFRYETKHTRPLIRVREITTFKEAHTVHSSAEETEEQVKE 169

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               Y + F  LG+     +                                        
Sbjct: 170 ALRIYRQFFDSLGIPYTVSK---------------------------------------- 189

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                         +W     A   +  + L   LP+ K      +++G +   G  ++ 
Sbjct: 190 ------------RPEWDKFPGALYTMAFDTL---LPDGK-----TLQIGTVHNLGQTFAK 229

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-- 354
               T++ A+G   YV    YG+ + RV+A++I    D  G+  P  VAP+ + ++ I  
Sbjct: 230 TFDITYETAEGNHEYVYQTCYGL-SDRVIASLIGIHGDDSGLCLPPDVAPYHVVIVPIIF 288

Query: 355 KAHDQVCRDACEKIYARL-SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           K   +V  D C+K+  +L S++   V++DD   + G ++   ++ G PL++ VG + + +
Sbjct: 289 KKGGEVVIDFCKKLQEKLESELNLRVYFDDRDIRAGKKYYEWEMRGIPLRLEVGPRDIEN 348

Query: 414 SKVEIKHRLTGIREDMSLEE--VINYASHRFSN 444
            K+    R +  +E +  ++  +    ++   N
Sbjct: 349 HKIVTFRRESKEKEIIDYDDTTISKTVNNLLDN 381


>gi|169244471|gb|ACA50509.1| aminoacyl-tRNA synthase [Oryza sativa Japonica Group]
          Length = 510

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/417 (17%), Positives = 139/417 (33%), Gaps = 68/417 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P   +  + +      E  +        P   + + L  E    + +  E+  
Sbjct: 57  SGCYILRPWAMEIWELLKEFFDAEIKKLKLKPYYFPLFVTENVLQKEKDHIEGFAPEVAW 116

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   F   I+S+R+LP    Q     R E       +R
Sbjct: 117 VTKSGKSDLEAPIAIRPTSETVMYPYFSKWIRSHRDLPLRCNQWCNVVRWEFSNPTPFIR 176

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T E +     ++   Y                        +  EF+
Sbjct: 177 SREFLWQEGHTAFATKEEADEEVLQILELY----------------------RRIYEEFL 214

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                              S +E++      TS      +   +
Sbjct: 215 A--------------------------VPVSKGRKSEMEKFAGGLYTTS------VEAFI 242

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     + RG++       G  ++     TF+   G    V   S+     R +  ++ +
Sbjct: 243 PN----TGRGVQGATSHCLGQNFAKMFDITFENDKGSRSMVWQNSWAY-TTRSIGVMVMT 297

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
             D KG++ P  VAP ++ +I +   D       + C+K    L K G     D      
Sbjct: 298 HGDDKGLVLPPRVAPLQVIVIPVPYKDVDTTAIVNECKKTVETLEKAGIRADLDTRANYS 357

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            G +++  ++ G PL++ +G K +++++  +  R  G + D+   +++   +     
Sbjct: 358 PGWKYSHWEMKGVPLRIEIGPKDMANNQARVVRRDNGAKADIPTADLVEKVNGLLDE 414


>gi|55980084|ref|YP_143381.1| prolyl-tRNA synthetase [Thermus thermophilus HB8]
 gi|81821927|sp|Q5SM28|SYP_THET8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|14719699|pdb|1H4Q|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg), Atp And Prolinol
 gi|14719700|pdb|1H4Q|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg), Atp And Prolinol
 gi|14719702|pdb|1H4S|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
 gi|14719703|pdb|1H4S|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
 gi|14719710|pdb|1HC7|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus
 gi|14719711|pdb|1HC7|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus
 gi|14719712|pdb|1HC7|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus
 gi|14719713|pdb|1HC7|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus
 gi|14423353|gb|AAK62359.1|AF384553_1 prolyl-tRNA synthetase [Thermus thermophilus]
 gi|55771497|dbj|BAD69938.1| prolyl-tRNA synthetase [Thermus thermophilus HB8]
          Length = 477

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 145/414 (35%), Gaps = 70/414 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    +N+  ++      TG      P       L  E+   + +  E+  +     +
Sbjct: 41  PYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGE 100

Query: 103 AMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E V+  ++   I+S+R+LP    Q     R E+R R  + R+ EFL +
Sbjct: 101 ELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFL-RTSEFLWQ 159

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T E ++    +M   Y R+                                  
Sbjct: 160 EGHTAHATREEAEEEVRRMLSIYARLAR-------------------------------- 187

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                           E      I  L +  E++      T+            E     
Sbjct: 188 ----------------EYAAIPVIEGLKTEKEKFAGAVYTTT-----------IEALMKD 220

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  ++      F+  D +  YV   S+G+ + R + A+I +  D +G+
Sbjct: 221 GKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGL-SWRFIGAIIMTHGDDRGL 279

Query: 339 IWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVA 395
           + P  +AP ++ ++ I   +  +   +A + +   L   G  V  DD      G +F   
Sbjct: 280 VLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEW 339

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +L G P +V +G K +   +  +  RL G +E + L  +      +       L
Sbjct: 340 ELKGVPFRVELGPKDLEGGQAVLASRLGG-KETLPLAALPEALPGKLDAFHEEL 392


>gi|253573561|ref|ZP_04850904.1| prolyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847089|gb|EES75094.1| prolyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 483

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 147/414 (35%), Gaps = 69/414 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  +++ A +      TG      P       +  E    + +  E+  +
Sbjct: 40  GCIVFKPDGYEIWEHIQAELDRRFKETGHRNAYFPLFIPESFFQKEKEHVEGFNPELPWV 99

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
            +    + ++ +   PT E ++  ++   I+SYR+LP    Q     R E R     +R+
Sbjct: 100 TEAAGEKLEERLAIRPTSETMIGHMYEKWIQSYRDLPVLINQWANVVRWEKR-TLPFLRT 158

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++     + ++    +M                        I  D    ++ 
Sbjct: 159 SEFLWQEGHTAHENEQEAREETMRMLE----------------------IYRDFVENYLA 196

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        I+   +  E++              +     
Sbjct: 197 --------------------------IPVIVGQKTPSEKFAG-----------AVDTYSI 219

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      R ++ G   Y GT ++      +   +    YV   S+G+ + R++ ++I   
Sbjct: 220 EAMMKDGRAVQAGTSHYLGTNFAKAFDIQYLNRENVREYVHTTSWGV-STRLIGSLIMVH 278

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDM-GEQIG 389
            D +G+  P  VAP ++ +I I      +      ++++A L K G  V  DD    + G
Sbjct: 279 GDDRGLALPPKVAPKQVMIIPIGPPKTWEAVVGRADELFAELKKAGIRVGIDDRADFRPG 338

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +F   ++ G P+++ +G + + +    +  R++G ++ +  + ++        
Sbjct: 339 WKFNEYEMRGVPVRLEIGPRDMENGVCVLVSRISGEKKVVQQDRLVEEVQAMLE 392


>gi|327313290|ref|YP_004328727.1| proline--tRNA ligase [Prevotella denticola F0289]
 gi|326944871|gb|AEA20756.1| proline--tRNA ligase [Prevotella denticola F0289]
          Length = 493

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 162/430 (37%), Gaps = 84/430 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A + +    TG      P L     L  E+     + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQAQLDKMFKETGVQNAYFPLLIPKSFLSREAEHVKGFAKECAVV 95

Query: 97  AD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                               + ++ +I  PT E ++ + +++ I S+R+LP    Q    
Sbjct: 96  THYRLKATEDGNGVEVDPNAKLEEELIIRPTSETIIWNTYKNWIHSWRDLPLMCNQWCNV 155

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E+R R   +R+ EFL ++ ++   T E ++     M                     
Sbjct: 156 MRWEMRTRP-FLRTSEFLWQEGHTAHATREEAEKEAQTML-------------------- 194

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                        V AD  E  +                    +  + S  E++      
Sbjct: 195 ------------HVYADFAEKWLA----------------VPVVQGVKSETERFAG---- 222

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                   L     E      + ++ G   + G  ++     T+   D K  YV   S+G
Sbjct: 223 -------ALDTYTIEAMMQDGKALQSGTSHFLGQNFAKSFDVTYLNKDNKPEYVWATSWG 275

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKV 375
           + + R++ A+I +  D  G++ P  +AP ++++I I   ++  ++   K+     +L ++
Sbjct: 276 V-STRLIGALIMTHSDDNGLVLPPRIAPIQVAIIPIFKGEEQLKEITAKLQPVIDQLREL 334

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +DD   ++ G +FA  +L G P+++ +G + + D+ +E+  R T  +E++S + +
Sbjct: 335 GITVKYDDSDNKRPGFKFADYELKGVPVRLAMGGRDLQDNTIEVMRRDTLEKENVSFDGI 394

Query: 435 INYASHRFSN 444
           +        +
Sbjct: 395 VGRVKSLLDD 404


>gi|297613111|ref|NP_001066707.2| Os12g0443700 [Oryza sativa Japonica Group]
 gi|77554943|gb|ABA97739.1| Bifunctional aminoacyl-tRNA synthetase, putative, expressed [Oryza
           sativa Japonica Group]
 gi|215697485|dbj|BAG91479.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215740854|dbj|BAG97010.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218186797|gb|EEC69224.1| hypothetical protein OsI_38226 [Oryza sativa Indica Group]
 gi|222617028|gb|EEE53160.1| hypothetical protein OsJ_35987 [Oryza sativa Japonica Group]
 gi|255670276|dbj|BAF29726.2| Os12g0443700 [Oryza sativa Japonica Group]
          Length = 510

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/417 (17%), Positives = 139/417 (33%), Gaps = 68/417 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P   +  + +      E  +        P   + + L  E    + +  E+  
Sbjct: 57  SGCYILRPWAMEIWELLKEFFDAEIKKLKLKPYYFPLFVTENVLQKEKDHIEGFAPEVAW 116

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   F   I+S+R+LP    Q     R E       +R
Sbjct: 117 VTKSGKSDLEAPIAIRPTSETVMYPYFSKWIRSHRDLPLRCNQWCNVVRWEFSNPTPFIR 176

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T E +     ++   Y                        +  EF+
Sbjct: 177 SREFLWQEGHTAFATKEEADEEVLQILELY----------------------RRIYEEFL 214

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                              S +E++      TS      +   +
Sbjct: 215 A--------------------------VPVSKGRKSEMEKFAGGLYTTS------VEAFI 242

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     + RG++       G  ++     TF+   G    V   S+     R +  ++ +
Sbjct: 243 PN----TGRGVQGATSHCLGQNFAKMFDITFENDKGSRSMVWQNSWAY-TTRSIGVMVMT 297

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
             D KG++ P  VAP ++ +I +   D       + C+K    L K G     D      
Sbjct: 298 HGDDKGLVLPPRVAPLQVIVIPVPYKDVDTTAIVNECKKTVETLEKAGIRADLDTRENYS 357

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            G +++  ++ G PL++ +G K +++++  +  R  G + D+   +++   +     
Sbjct: 358 PGWKYSHWEMKGVPLRIEIGPKDMANNQARVVRRDNGAKADIPTADLVEKVNGLLDE 414


>gi|325854993|ref|ZP_08171709.1| proline--tRNA ligase [Prevotella denticola CRIS 18C-A]
 gi|325483971|gb|EGC86911.1| proline--tRNA ligase [Prevotella denticola CRIS 18C-A]
          Length = 493

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 162/430 (37%), Gaps = 84/430 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A + +    TG      P L     L  E+     + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQAQLDKMFKETGVQNAYFPLLIPKSFLSREAEHVKGFAKECAVV 95

Query: 97  AD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                               + ++ +I  PT E ++ + +++ I S+R+LP    Q    
Sbjct: 96  THYRLKATEDGNGVEVDPNAKLEEELIIRPTSETIIWNTYKNWIHSWRDLPLMCNQWCNV 155

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E+R R   +R+ EFL ++ ++   T E ++     M                     
Sbjct: 156 MRWEMRTRP-FLRTSEFLWQEGHTAHATREEAEKEAQTML-------------------- 194

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                        V AD  E  +                    +  + S  E++      
Sbjct: 195 ------------HVYADFAEKWLA----------------VPVVQGVKSETERFAG---- 222

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                   L     E      + ++ G   + G  ++     T+   D K  YV   S+G
Sbjct: 223 -------ALDTYTIEAMMQDGKALQSGTSHFLGQNFAKSFDVTYLNKDNKPEYVWATSWG 275

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKV 375
           + + R++ A+I +  D  G++ P  +AP ++++I I   ++  ++   K+     +L ++
Sbjct: 276 V-STRLIGALIMTHSDDNGLVLPPRIAPIQVAIIPIFKGEEQLKEITAKLQPVIDQLREL 334

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +DD   ++ G +FA  +L G P+++ +G + + D+ +E+  R T  +E++S + +
Sbjct: 335 GITVKYDDSDNKRPGFKFADYELKGVPVRLAMGGRDLQDNTIEVMRRDTLEKENVSFDGI 394

Query: 435 INYASHRFSN 444
           +        +
Sbjct: 395 VGRVKSLLDD 404


>gi|146304669|ref|YP_001191985.1| prolyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
 gi|172046942|sp|A4YI09|SYP_METS5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145702919|gb|ABP96061.1| prolyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
          Length = 480

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 86/418 (20%), Positives = 148/418 (35%), Gaps = 76/418 (18%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEML 94
             G+  W+P G K   NV  +IR+  + TG  E+  P L    L   E+     + KE+ 
Sbjct: 35  GSGV--WMPYGFKIRQNVTTLIRKLLDETGHEEVLFPLLIPETLLKKEAEHIKGFEKEVF 92

Query: 95  RLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            +    +          PT E  +T +    IK Y  LP  FYQI   FR E +    ++
Sbjct: 93  WVTHGGEDELEERFALRPTSEVAITLMESLWIKGYSQLPRKFYQIVSVFRYETKATRPMI 152

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R RE                                                      E 
Sbjct: 153 RVREL-------------------------------------------------STFKEA 163

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN--SIVEQWTAPYAATSDVHNEKLF 268
             + +T E         +D  +   +  FD +      S   +W     A   +  + + 
Sbjct: 164 HTVHETFEDAA----RQVDEAVEIYSKFFDILGIPYLISRRPEWDKFAGAEYTIALDTIM 219

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
              P+      R +++G   + G  ++  M    + ADG   +    SYGI + RV+A V
Sbjct: 220 ---PDG-----RALQIGTAHHLGQHFTKAMDYKVQRADGSHVHPHQTSYGI-SDRVIATV 270

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYARLSKVGCDVFWDDM 384
           I  + D  G I P  VAP +  +I I    +           ++ + L   G  V  D  
Sbjct: 271 ISINGDDHGPILPPVVAPIEGVIIPIPGKSEEDTEKINKYAMEVESVLKNSGIRVALDAS 330

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             +  G ++ + +L G P+++ +G + ++     +K R T   + +  EE++    + 
Sbjct: 331 EDKTPGEKYYIWELKGVPIRIEIGPRELNSGTAFLKRRDTLEGKSVKREELVKEFRNL 388


>gi|260585028|ref|ZP_05852770.1| proline--tRNA ligase [Granulicatella elegans ATCC 700633]
 gi|260157224|gb|EEW92298.1| proline--tRNA ligase [Granulicatella elegans ATCC 700633]
          Length = 482

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/453 (16%), Positives = 155/453 (34%), Gaps = 90/453 (19%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM----LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
            SK+++  +Q    D       LM    +R  MI +         P G +  +++     
Sbjct: 12  FSKWYIQTIQ--KAD-------LMDYSPVRGCMIFK---------PDGYEIWEHIQEEFN 53

Query: 59  EEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEV 113
                 G      P L     +  E+   + +  E+  + +    + ++ +   PT E +
Sbjct: 54  RRFKEEGIRNAYFPMLIPESFFTKEADHIEGFAPELPWVTEAAGEKLEERLALRPTSETM 113

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           +   F + I SYR+LP+   Q    FR E +     +R+ EFL ++              
Sbjct: 114 IGTAFSNWINSYRDLPYEVNQWANVFRWEKK-TLPFLRTSEFLWQEG------------- 159

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                                  A+             +  +  E  V     +     P
Sbjct: 160 -------------------HTAHADEADARRRTMKMLDIYKEVVEG-VLAVPVYEGQKTP 199

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           SE                    +A   D +         E      + ++ G   Y GTK
Sbjct: 200 SER-------------------FAGAVDTY-------SIEAMMKDGKAVQAGTSHYMGTK 233

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           ++      +   + +  +    S+G+ + R++ ++I +  D +G++ P  VAP ++ LI 
Sbjct: 234 FAEAFDIKYLTKENEHVHAHTTSWGV-STRLIGSLIMTHGDEQGLVLPPKVAPTQVVLIP 292

Query: 354 IK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +     +    +  E++  +L   G  V  DD     G +F   +L G P+++  G + +
Sbjct: 293 VGPWKKNPAILEKLEELQQQLKAAGLRVKIDDTDNSPGFKFNEWELRGVPMRIECGPRDL 352

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +++V  K R    +  +  + ++         
Sbjct: 353 ENNQVMTKMRDLDEKVAVGFDVLLETIQSELEK 385


>gi|117164481|emb|CAJ88027.1| putative threonyl tRNA synthetase [Streptomyces ambofaciens ATCC
           23877]
          Length = 411

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/432 (16%), Positives = 126/432 (29%), Gaps = 45/432 (10%)

Query: 17  DAEIASHKLMLRTG--MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           D      +L L     +I     G+  WLP G     ++   IR  + R G   +  P L
Sbjct: 6   DHRKLGRELGLFDTDPLI---GAGLPYWLPDGAAVRYSLEEYIRAAERRAGYRHVYSPVL 62

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
              +L+  SG +  Y  +M    D   + ++  P+       I+RS   SYR LP    +
Sbjct: 63  GKRELYEISGHWAHYSDDMFPPMDLGGEQVVLRPSLCPHHAVIYRSRSHSYRELPLRMAE 122

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +   +R EL    G +     +  +      T +              + +  LG+    
Sbjct: 123 LGGMYRSELSGVLGGLTRVRAIQLNDAHIFCTLDQVAGEAQAALEMIRQAYEALGITPTR 182

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            R      G                      +             D         +   A
Sbjct: 183 YRLSLPGPGAK---------------YVADPEKWQRSTALLTDVLDRSGLPYEAAQGEAA 227

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
            Y    DV   ++ D       +S   ++                  + GADG  H   M
Sbjct: 228 FYGPKIDV---QVTDGAGRESTLSTVQVDFHQP--------ERFDLHYIGADGGKHRPVM 276

Query: 315 GSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               I     R VA +IE            +             +     +    +    
Sbjct: 277 VHRSIIGSVERAVAHLIEQHGGAFPAWLAPTQLVVLPISDTEWPNAAALAERAAGL---- 332

Query: 373 SKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
              G        + G  +G++   A L   P Q ++G++  +D  V ++ R     +   
Sbjct: 333 ---GLRAEIAGPERG-SLGARVREARL--VPYQAVIGAREAADDHVALRLRDGRRIDPQP 386

Query: 431 LEEVINYASHRF 442
           + EV+ + S   
Sbjct: 387 VGEVLPHISALI 398


>gi|229494206|ref|ZP_04387969.1| threonyl-tRNA synthetase [Rhodococcus erythropolis SK121]
 gi|229318568|gb|EEN84426.1| threonyl-tRNA synthetase [Rhodococcus erythropolis SK121]
          Length = 406

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/403 (15%), Positives = 120/403 (29%), Gaps = 35/403 (8%)

Query: 17  DAEIASHKLMLRTGM-IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           D       L       I     G+  WLP G    + +     E+  R+G   +  P + 
Sbjct: 4   DHRELGRDLEFFATTPI--VGAGLPLWLPDGAVIRNELEKFAAEQAARSGCRGVYTPVMA 61

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             +L+  SG +  +  +M        ++ +  P +      +F +  +SYR LPF   ++
Sbjct: 62  KKELYERSGHWSKFSDDMFPEMKIGGESFLLRPANCPHHAQVFAARGRSYRELPFRVREL 121

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              FR EL      +     +  D      + E  +        +  R +  LG+     
Sbjct: 122 GSMFRSELSGVLSGLSRVRQINLDDAHVFCSREQVQAEVIVALDAIERCYSTLGIAERKY 181

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           R                    GE Q   + +             +         +   A 
Sbjct: 182 RLSIRG---------------GEGQYLGTDEQWADAEDHLRGALNARSIEYVEAKGEAAF 226

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y    DV   ++ D+    + +S   ++                  +   DG      M 
Sbjct: 227 YGPKIDV---QVRDAHGREETLSTVQLDFNQP--------ERFDLEYTAEDGSKVRPVMI 275

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
             G+         +    +      P  +AP ++S++ +    QV     E++ A L   
Sbjct: 276 HRGLLGSMERMTALL--IERFEGRMPPWLAPNQVSILPVGDRHQV---EAERLRADLEAR 330

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              V        +G +   A     P   ++G   V    V++
Sbjct: 331 DVRVAI-APDGSLGRRIREARTHRDPYIAVIGDNEVHGGTVDV 372


>gi|167520264|ref|XP_001744471.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776802|gb|EDQ90420.1| predicted protein [Monosiga brevicollis MX1]
          Length = 473

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/427 (16%), Positives = 137/427 (32%), Gaps = 67/427 (15%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+  +Y   +     R  +    +  L    +   S G   WLP G +    + A++R  
Sbjct: 58  MK--QYEARLEMAKQRTHQHIGQEQKLF--FLDARSPGAPFWLPHGLRIFKRLEALVRGV 113

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI--YGPTHEEVMTDIF 118
            +  G  E+  P +    LW  SG ++ Y ++M  L  + D+ +     P +      +F
Sbjct: 114 HSNYGFEEVKSPLVYKQHLWNTSGHWEHYSEDMTVLQHKEDEEVCQALKPMNCPAHCIMF 173

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
                SYR LP  F +     R+E      G+ R R+F   D + F    + S     + 
Sbjct: 174 SHEPHSYRELPLRFAEHSALHRNEASGALSGLTRVRQFHQDDGHIFCRPDQVSSE-VARC 232

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +   ++ RLGL        + P  G                 +     +   + S   
Sbjct: 233 LEAIGVVYARLGLT-PTAVLSTRPETG-----------------YVGSLEIWCALRS--- 271

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
                                 S + + ++ D++    + +   ++      F       
Sbjct: 272 ----------------------SFIIDIRVRDAMGRTHQTATIQLDFNMPMRF------- 302

Query: 298 MSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              ++K  DG       +    +G+   + A++          W           + I  
Sbjct: 303 -ELSYKDEDGAPQTPVLIHRAVLGSFERMMALLT------EQYWGRWPLHLSPRQLLILP 355

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +        +Y  L   G  V  DD    +  + A   +L      +VG + V++  +
Sbjct: 356 VSEKHASYAWDVYHELQPFG-HVDVDDSPVSLSKRIAQQRVLRHNYVAVVGDEEVANDTL 414

Query: 417 EIKHRLT 423
            I+HR  
Sbjct: 415 SIRHRDG 421


>gi|332220155|ref|XP_003259223.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial isoform 2
           [Nomascus leucogenys]
          Length = 588

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 123/416 (29%), Gaps = 53/416 (12%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--------------- 94
            D +  + + E  R G  E+  PTL S  LW +SG ++ Y ++M                
Sbjct: 202 RDQLRQLFKAEYARRGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQS 261

Query: 95  -RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRS 152
                     +   P +      +F    +S+R LP          R E      G+ R 
Sbjct: 262 DDSTRHITDTLALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGSLRGLTRL 321

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F  T +               ++  LG         + P G         
Sbjct: 322 RCFQQDDAHIFCTTDQLEAE-IQSCLDFLRSVYAVLGFSFRLA-LSTRPSGF-------- 371

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                           D           +      +     A Y    DVH   L D+L 
Sbjct: 372 ---------LGDPCLWDQAEQVLKQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALG 419

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
              +     ++    F    ++       +KG  G      +    +        ++   
Sbjct: 420 RPHQCGTIQLD----FQLPLRFD----LQYKGQAGALERPVLIHRAVLGSMER--LLGVL 469

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
            +  G  WP  ++PF++ +I +    +   +   +    L   G     D D G  +  +
Sbjct: 470 AESCGGKWPLWLSPFQVVVIPVGTEQE---EYAREAQQSLQAAGLVSDLDADSGLTLSRR 526

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
              A L  +  Q +VG K  S   V I+ R      +  L E +       +   P
Sbjct: 527 IRQAQLAHYNFQFVVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVELQNTRVP 582


>gi|302528111|ref|ZP_07280453.1| threonyl-tRNA synthetase [Streptomyces sp. AA4]
 gi|302437006|gb|EFL08822.1| threonyl-tRNA synthetase [Streptomyces sp. AA4]
          Length = 415

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/424 (18%), Positives = 138/424 (32%), Gaps = 45/424 (10%)

Query: 17  DAEIASHKLMLRTG--MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           D      +L L     +I     G+   LP G      +   +RE + R G   +S P L
Sbjct: 16  DHRKLGRELGLFGSDPLI---GAGLPYLLPDGAAIRHVLEEYVREVERRAGYQHVSSPVL 72

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
              +L+  SG +  Y ++M    D   + ++  P+       I+RS   S+R LP    +
Sbjct: 73  GKRELYELSGHWAHYREDMFPPMDLGGEQVVLRPSLCPHHALIYRSRAHSHRELPLRLAE 132

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +   +R EL    G +     +  +       PE              R+   LGLK   
Sbjct: 133 LGGMYRAELSGVLGGLSRVRAIQLNDAHIFCLPEQVGAEVRGALELIRRVCQDLGLKPAR 192

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            R       G                   + +  D          D             A
Sbjct: 193 YRLSLPDNRGK---------------YAGAAEAWDRAAEVLVEALD--GIEYERGPGEAA 235

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ- 313
            Y    DV   +L DS      +S   I++     FG          + G DG+ H    
Sbjct: 236 FYGPKIDV---QLADSSGRESTLSTVQIDLHQPEQFG--------LEYVGPDGRAHRPVL 284

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G++  V A +    +  G  +P  +AP +++++ +   +    +A  +      
Sbjct: 285 VHRAVLGSLERVLAQLI---EEHGGAFPPWLAPVQVAVLPVGDAELAAAEAVAEEAMA-- 339

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G        D G  +G++     L   P Q +VG        V  + R     + +  
Sbjct: 340 -AGLRAEVVPADRG-SLGARIRDRRL--VPYQAVVGPLEADAGLVAPRLRDGRRLDPLLA 395

Query: 432 EEVI 435
           +E I
Sbjct: 396 KEFI 399


>gi|94984677|ref|YP_604041.1| prolyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
 gi|114152189|sp|Q1J0W2|SYP_DEIGD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|94554958|gb|ABF44872.1| prolyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
          Length = 497

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/409 (18%), Positives = 149/409 (36%), Gaps = 69/409 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL----AD 98
           P G    +N+   + +    TG   +  PTL   + +  E+   + +  E+  +     +
Sbjct: 54  PYGTALWENIQRWLDDRFKATGHESLIFPTLIPMNFITKEADHVEGFAPELFTVDRIGTE 113

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           +  +  +  PT E ++  ++   + SYR+LPF  YQ    FR ELR     +R+ EF   
Sbjct: 114 QLTEPYVLRPTSETIIGYMWSGWLNSYRDLPFLHYQWGSVFRAELR-TKAFLRTSEFYWH 172

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   + E ++    ++   Y                          HEF        
Sbjct: 173 EGHTAHASEEEARREVRQILDLY--------------------------HEF-------- 198

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
               C        +  E T  +                          +     E     
Sbjct: 199 ----CRDILALPVVRGEKTASERFAG---------------------AVATYSIEGMMRD 233

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  +S      F+  + ++ Y    S+ I + R++ A+I +  D  G+
Sbjct: 234 GKALQSGTSHYLGQNFSKAFDVKFQTREQREEYAYTTSWAI-SSRIIGAIIMTHGDDFGL 292

Query: 339 IWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
           I P  +AP ++ +I +   +         EK+   L   G  V  D   G   G ++   
Sbjct: 293 IMPPRIAPIQVVVIPVSRKENFDQMVAEGEKLAHELRAQGLRVKVDRREGVTNGFKYNDW 352

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +L G P+++ +G + +    V +K+R    +E +  EE I   ++R  +
Sbjct: 353 ELKGVPVRIELGPRDLEQGVVVVKNRNAEEKETLPREEAIRGMANRLDS 401


>gi|317497213|ref|ZP_07955537.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895458|gb|EFV17616.1| prolyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 478

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 147/411 (35%), Gaps = 67/411 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    +N+  ++  +   TG   +++P      L   E    + +  E+  +
Sbjct: 39  GCMILRPNGYAIWENIQKVLDAKFKETGVENVAMPMFIPESLLKKEEDHVEGFAPEVAWV 98

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               DK +       PT E +  D +   I+S+R+LP  + Q     R E   R  + R+
Sbjct: 99  THGGDKELQERLCVRPTSETLFCDFYSKIIQSHRDLPKLYNQWVSVVRWEKTTRPFL-RT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF  ++ ++   T E ++    +M   Y                               
Sbjct: 158 SEFFWQEGHTAHATEEEAEARTVQMLNMY------------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E  +                    +    +  E++   ++  +            
Sbjct: 187 -ADFCEQYLAI----------------PVVKGQKTEKEKFAGAHSTYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG  ++      +   D K  YV   S+G+ + R++ A+I   
Sbjct: 219 EALMHDGKALQSGTSHNFGDGFAKAFDIQYTDKDNKLQYVHQTSWGM-STRIIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP +  ++ I    +   D  E+I  RL+     V  DD  +  G +F
Sbjct: 278 GDDSGLVLPPRIAPVQTMIVPIMQKKEGVLDKAEEIRKRLASS-YKVKVDDSDKSPGWKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +  ++ G P ++ +G K +  ++  I  R T  +  +SL+E+         
Sbjct: 337 SEQEVRGIPTRIEIGPKDIEKNQAVIVRRDTREKIIVSLDEIETKLGEVLE 387


>gi|240144896|ref|ZP_04743497.1| proline--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257203029|gb|EEV01314.1| proline--tRNA ligase [Roseburia intestinalis L1-82]
          Length = 330

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/210 (30%), Positives = 103/210 (49%)

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
              N D      L+   +   A Y   +  +   +     +     +RGIEVG+IF  G 
Sbjct: 121 CGANEDEYHYKGLDMQRDVPDAEYHDFAKAYEGGICPKCGKKTIRISRGIEVGNIFQLGD 180

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           KY+  M  T+   +G+     MG YGIG  R+ AAV E+ HD  G IWP S+AP+++ L 
Sbjct: 181 KYTKAMKMTYVDQNGESKTPIMGCYGIGVGRLAAAVCEAHHDEYGPIWPKSIAPWQVHLC 240

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            ++A ++  R   + +Y +L ++G +V +DD     G  F+ ADLLG PL+VIV  + + 
Sbjct: 241 AVRADNEEVRKFADDLYEKLQEMGIEVIYDDRTVSAGVMFSDADLLGIPLRVIVSPRNMK 300

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              VE+  R   ++  + +EE         
Sbjct: 301 QGVVEVASRDKTLQTQVKMEEAAEQVKKYL 330


>gi|194017643|ref|ZP_03056254.1| prolyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194010915|gb|EDW20486.1| prolyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 477

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 156/423 (36%), Gaps = 76/423 (17%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGR 85
           +R  MI Q         P G K  +N+   +  +   TG   + +P      L   E   
Sbjct: 36  VRGSMIIQ---------PYGFKIWENIRDELDRQIKETGHENVYMPLFIPESLLQQEKDH 86

Query: 86  YDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +    +  +       PT E +  + +++ I SYR+LP  + Q     R 
Sbjct: 87  IEGFAPEVAWVTHGGESELQERLCVRPTSEVLFAEHYKNIIHSYRDLPKLYNQWANVVRW 146

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E   R   +R+ EFL ++ ++   T + +     +M                        
Sbjct: 147 EKTTRP-FLRTLEFLWQEGHTCHETEQEAIEETERML----------------------H 183

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           I   L  E +                              I    +  E++         
Sbjct: 184 IYASLCEELLA--------------------------IPVIKGRKTEKEKFAG------- 210

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                 F    E+     + ++     +FG  ++      F   +GK  +VQ  S+G   
Sbjct: 211 ----ARFTYTVESLMHDGKALQTATSHFFGNGFAKAFGIEFLNREGKLEHVQQTSWGF-T 265

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++ A+I    D +G++ P ++AP ++ ++ I +H +   D   ++  RL+++      
Sbjct: 266 TRIIGAMIMVHGDDRGLVLPPNIAPTQVRIVPIASHKEGVLDHAYELKERLTRI-ARADI 324

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D   +Q G +F   ++ G PL+V VG K +   +V +  R TG ++ ++L+ +    +  
Sbjct: 325 DASDKQPGWKFNECEMQGIPLRVEVGPKDIEKGQVMLARRDTGEKQAVTLDALEQTITST 384

Query: 442 FSN 444
             +
Sbjct: 385 LED 387


>gi|167765976|ref|ZP_02438029.1| hypothetical protein CLOSS21_00467 [Clostridium sp. SS2/1]
 gi|167712333|gb|EDS22912.1| hypothetical protein CLOSS21_00467 [Clostridium sp. SS2/1]
 gi|291558770|emb|CBL37570.1| prolyl-tRNA synthetase, family I [butyrate-producing bacterium
           SSC/2]
          Length = 478

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 146/411 (35%), Gaps = 67/411 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    +N+  ++  +   TG   +++P      L   E    + +  E+  +
Sbjct: 39  GCMILRPNGYAIWENIQKVLDAKFKETGVENVAMPMFIPESLLKKEEDHVEGFAPEVAWV 98

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               DK +       PT E +  D +   I+S+R+LP  + Q     R E   R  + R+
Sbjct: 99  THGGDKELQERLCVRPTSETLFCDFYSKIIQSHRDLPKLYNQWVSVVRWEKTTRPFL-RT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF  ++ ++   T E ++    +M   Y                               
Sbjct: 158 SEFFWQEGHTAHATEEEAEARTVQMLNMY------------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E  +                    +    +  E++   ++  +            
Sbjct: 187 -ADFCEQYLAI----------------PVVKGQKTEKEKFAGAHSTYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG  ++      +   D K  YV   S+G+ + R++ A+I   
Sbjct: 219 EALMHDGKALQSGTSHNFGDGFAKAFDIQYTDKDNKLQYVHQTSWGM-STRIIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP +  ++ I    +   D  E+I  RL      V  DD  +  G +F
Sbjct: 278 GDDSGLVLPPRIAPVQTMIVPIMQKKEGVLDKAEEIRKRLVSS-YKVKVDDSDKSPGWKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +  ++ G P ++ +G K +  ++  I  R T  +  +SL+E+         
Sbjct: 337 SEQEVRGIPTRIEIGPKDIEKNQAVIVRRDTREKIIVSLDEIETKLGEVLE 387


>gi|330508032|ref|YP_004384460.1| prolyl-tRNA synthetase [Methanosaeta concilii GP-6]
 gi|328928840|gb|AEB68642.1| prolyl-tRNA synthetase [Methanosaeta concilii GP-6]
          Length = 487

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/427 (19%), Positives = 151/427 (35%), Gaps = 70/427 (16%)

Query: 23  HKLMLRTGMI--HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DL 79
           H+L++   +I      KG+  W P G     NV  IIR+  +     E   P +    + 
Sbjct: 32  HELLMTGEIIDNRYPVKGMCVWFPFGFAIKKNVYGIIRQLLD-PDHQETLFPLMIPENEF 90

Query: 80  WVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             E+     + +E+  +        +  +   PT E  +  +F+  I+S+ ++P   YQI
Sbjct: 91  MKEAQHIKGFEEEVYWVTCGGTTPLEVKLALRPTSETAIYPMFKLWIRSHADMPLRIYQI 150

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              FR E +    ++R RE                + +  ++ V+  R        +IP 
Sbjct: 151 VNTFRYETKHTRPLIRLREITSFKE--AHTVHATWEEAAEQVEVAIKRYSEFYRRLAIPF 208

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                P                                                    A 
Sbjct: 209 LVSRRPSWDKFP---------------------------------------------GAD 223

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y    DV        +P+ K      ++VG   + G+ ++     T++  DG+   V   
Sbjct: 224 YTTAIDVI-------MPDGK-----TLQVGTAHHLGSTFAKTYEITYEAEDGEQKLVNQT 271

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSK 374
            YGI + R +AA+I    D KG+  P  VAP ++ ++ I   D +   + C  +   L +
Sbjct: 272 CYGI-SERCIAALISVHGDDKGLALPWEVAPVQVVIVPILLGDKEKVLEVCRDLLRILQQ 330

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V  D   E+ G++F   ++ G P+++ VG + +    V +  R    +  +  E +
Sbjct: 331 AGIRVELDTSDERPGAKFYKWEMKGVPIRLEVGPRDIEKGVVTVVRRD-AEKLTLPREGL 389

Query: 435 INYASHR 441
                  
Sbjct: 390 AQALVRE 396


>gi|157690994|ref|YP_001485456.1| prolyl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|157679752|gb|ABV60896.1| proline--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 477

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 156/423 (36%), Gaps = 76/423 (17%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGR 85
           +R  MI Q         P G K  +N+   +  +   TG   + +P      L   E   
Sbjct: 36  VRGSMIIQ---------PYGFKIWENIRDELDRQIKETGHENVYMPLFIPESLLQQEKDH 86

Query: 86  YDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +    +  +       PT E +  + +++ I SYR+LP  + Q     R 
Sbjct: 87  IEGFAPEVAWVTHGGESELQERLCVRPTSEVLFAEHYKNIIHSYRDLPKLYNQWANVVRW 146

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E   R  + R+ EFL ++ ++   T + +     +M                        
Sbjct: 147 EKTTRPFL-RTLEFLWQEGHTCHETEQEAIEETERML----------------------H 183

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           I   L  E +                              I    +  E++         
Sbjct: 184 IYASLCEELLA--------------------------IPVIKGRKTEKEKFAG------- 210

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                 F    E+     + ++     +FG  ++      F   +GK  +VQ  S+G   
Sbjct: 211 ----ARFTYTVESLMHDGKALQTATSHFFGNGFAKAFGIEFLNREGKLEHVQQTSWGF-T 265

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++ A+I    D +G++ P ++AP ++ ++ I +H +   D   ++  RL+++      
Sbjct: 266 TRIIGAMIMVHGDDRGLVLPPNIAPTQVRIVPIASHKEGVLDHAYELKDRLTRI-ARADI 324

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D   +Q G +F   ++ G PL+V VG K +   +V +  R TG ++ ++L+ +    +  
Sbjct: 325 DASDKQPGWKFNECEMQGIPLRVEVGPKDIEKGQVMLARRDTGEKQAVTLDALEQTITST 384

Query: 442 FSN 444
             +
Sbjct: 385 LED 387


>gi|149910913|ref|ZP_01899544.1| threonyl-tRNA synthetase [Moritella sp. PE36]
 gi|149805980|gb|EDM65964.1| threonyl-tRNA synthetase [Moritella sp. PE36]
          Length = 513

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 91/284 (32%), Gaps = 25/284 (8%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +L L    + + + G+  W   G      +  +IRE+       E+  
Sbjct: 238 EAEKRDHRKIGKQLDLY--HMQEDAPGMVFWHNDGWIIFRELENLIREKLREFDYQEVKG 295

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +    LW +SG +D Y + M       ++     P +      I+   +KSYR+LP  
Sbjct: 296 PQIMDRSLWEKSGHWDKYSEGMF-CTHSENREYAIKPMNCPGHVQIYNQGLKSYRDLPLR 354

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             +     R+E      G+MR R F   DA+ F  T    +   +         +   G 
Sbjct: 355 MAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TESQIQKEVSDCIKMVFETYATFGF 413

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           ++I ++  + P     S E                   D    +             + E
Sbjct: 414 ENIEIKLSTRPEKRVGSDE-----------------TWDKSEQALADALTASGLSYDVQE 456

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
              A Y    +     L D L    +     ++       G +Y
Sbjct: 457 GEGAFYGPKIEF---TLHDCLDRAWQCGTIQLDFSMPEKLGAEY 497


>gi|46121741|ref|XP_385425.1| hypothetical protein FG05249.1 [Gibberella zeae PH-1]
          Length = 553

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 149/434 (34%), Gaps = 74/434 (17%)

Query: 27  LRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVES 83
           L+  M+  ++   G +   PL     + +    +      G  E + P  L S  L  E 
Sbjct: 66  LKAEMVEYYTEISGFFVLRPLSMHIWNEIRKWFQGHIEEMGVDETNFPMFLSSKSLEKEK 125

Query: 84  GRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +    DK +       PT E VM   +   I+S+R+LP    Q     
Sbjct: 126 DHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLRLNQWNSVV 185

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +L           
Sbjct: 186 RWEAKQTTPFLRTREFLWQEGHTAHLTEELAGAEVLEILELYAGVYEKL----------- 234

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                                     +    +  E++   Y  T
Sbjct: 235 -------------------------------------LAVPVVRGRKTENEKFAGGYYTT 257

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  +   +P N     RGI+       G  +S     T +    +  ++ +     
Sbjct: 258 ------TVEGYIPSNG----RGIQGATSHALGQNFSKMFDITVEDPQKQGSHIHVWQNSW 307

Query: 320 G-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-------CRDACEKIYAR 371
           G + RV+  ++    D KG++ P  VA  ++ ++ +  + +          D  E+I A 
Sbjct: 308 GLSTRVIGVMVMIHGDDKGLVLPPRVAKTQVVIVPVGINKKTTPEEKKKHEDQVEEIRAN 367

Query: 372 LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L K G  V  D   G     +F   +L G PL+V  G K  +   +    R TG + +++
Sbjct: 368 LKKAGVRVTADWREGYTPAWKFNDWELKGVPLRVEFGPKDAAKGVISTARRDTGEKGEIA 427

Query: 431 LEEVINYASHRFSN 444
           + +V          
Sbjct: 428 IADVATKVPELLET 441


>gi|282877938|ref|ZP_06286747.1| proline--tRNA ligase [Prevotella buccalis ATCC 35310]
 gi|281299939|gb|EFA92299.1| proline--tRNA ligase [Prevotella buccalis ATCC 35310]
          Length = 493

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/426 (16%), Positives = 146/426 (34%), Gaps = 49/426 (11%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+++  +  Q +  G     P G    + +   + +    TGA     P L     L  E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQQQLDKMFKETGAQNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +     + KE   +     K+   G + E          +          +     +   
Sbjct: 82  AEHVKGFAKECAVVTHYRLKSSETGDSVEVDPAAKLEEELIIRPTSETIIWNTYKNW--- 138

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                                      +   +      +LR    L  +     A     
Sbjct: 139 ------------IQSWRDLPLMCNQWCNVMRWEMRTRPFLRTSEFLWQEGHTAHATREEA 186

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
             +      V AD  E             +P           +   V+  T  +A   D 
Sbjct: 187 EEEAQKMLKVYADFAEQ---------WMAVP-----------VVQGVKSETERFAGALDT 226

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           +         E      + ++ G   + G  ++     T+   + K  YV   S+G+ + 
Sbjct: 227 YT-------IEAMMQDGKALQSGTSHFLGQNFAKSFDVTYLNKENKPEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI---YARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ +I I  +++  +   +K+      L K+G  V
Sbjct: 279 RLIGALIMTHSDDNGLVLPPKLAPIQVVIIPIAKNEEQLKAIADKLNPFMDDLKKLGITV 338

Query: 380 FWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +DD   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E + +E + +Y 
Sbjct: 339 KYDDSNNKRPGFKFADYELKGVPVRLVMGGRDLENNTIEVMRRDTLEKETIPVEGLADYI 398

Query: 439 SHRFSN 444
                +
Sbjct: 399 YKLLDD 404


>gi|47220882|emb|CAG03089.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1638

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/433 (17%), Positives = 136/433 (31%), Gaps = 47/433 (10%)

Query: 28   RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGR 85
            +  MI  +   G Y   P      + +      E  + G      P   S A L  E   
Sbjct: 1132 KAEMIEYYDVSGCYVLRPWSYSIWEAIKDFFDAEIRKLGVENCYFPMFVSQAALEKEKTH 1191

Query: 86   YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
             + +  E+  +       +       PT E VM   +   ++S+R+LP    Q     R 
Sbjct: 1192 IEDFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRW 1251

Query: 142  ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            E +     +R+REFL ++ ++   T E +     ++   Y R++  L    +    ++  
Sbjct: 1252 EFKHPQPFLRTREFLWQEGHTAFATKEEAAEEVLQILDLYARVYEELMAIPVVKGRKTEK 1311

Query: 202  IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                   +F     T   + F S       +P                    AP      
Sbjct: 1312 ------EKFAGGDYTTTVEAFISASGRAIQVPG--------------APPSGAPEGLWWG 1351

Query: 262  VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG- 320
               ++     P          +     + G  +S      F+                G 
Sbjct: 1352 AAADEAPALCP----------QGATSHHLGQNFSKMFEIVFEDPKKPGEKQLAFQNSWGI 1401

Query: 321  AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLS 373
              R +  +     D KG++ P  VA  ++ +I          A  Q     C K    L 
Sbjct: 1402 TTRTIGVLTMVHGDNKGLVLPPRVACLQVVIIPCGITASLPEADRQALLAQCAKYQDHLQ 1461

Query: 374  KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSL 431
            + G  V  D       G +F   +L G P+++ VG K +   + V ++ R TG +  +  
Sbjct: 1462 RAGVRVKSDLRDNYSPGWKFNHWELKGVPVRLEVGPKDLQQRQCVAVR-RDTGAKLTVPE 1520

Query: 432  EEVINYASHRFSN 444
             EV         +
Sbjct: 1521 AEVEKQLRVLLED 1533


>gi|150866378|ref|XP_001385956.2| proline-tRNA ligase [Scheffersomyces stipitis CBS 6054]
 gi|149387634|gb|ABN67927.2| proline-tRNA ligase [Scheffersomyces stipitis CBS 6054]
          Length = 682

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 135/424 (31%), Gaps = 75/424 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
            G Y   P      + +         + G      P   S   L  E    + +  E+  
Sbjct: 209 SGCYILRPNSYAVWETIQDWFNVHIKKMGVQNSYFPMFVSQRVLEKEKDHIEGFAPEVAW 268

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D+ +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 269 VTRAGNSELDEHIAIRPTSETVMYPYYSKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLR 328

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT E +    +++   Y RI+                          
Sbjct: 329 TREFLWQEGHTAHLTKEEAAKEVDEILDLYARIYE------------------------- 363

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      +    +  E++    Y  T +         
Sbjct: 364 -----------------------ELLAVPVVKGKKTENEKFAGGDYTTTVEGFIAA---- 396

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAV 328
                  + RGI+     + GT +S   + + +  DG D             + RV+  +
Sbjct: 397 -------TGRGIQGATSHHLGTNFSKMFNISVENPDGADKPRVFAFQNSWGLSTRVIGVM 449

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFW 381
           + +  D KG++ P  VA  +  +I +           +   D    I ARL  V      
Sbjct: 450 VMTHSDNKGLVLPPRVAQTQAVVIPVGLTSKTTDEQRKAINDGAADIEARLKAVDVRAIG 509

Query: 382 DDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D       G +FA  +L G PL++  G K +S  +  +  R  G +  + L E+      
Sbjct: 510 DYRDIYTPGWKFAEWELKGVPLRIEFGPKDLSSEQATVVRRDNGAKYTVKLAELETRIPE 569

Query: 441 RFSN 444
               
Sbjct: 570 ILEE 573


>gi|114600746|ref|XP_001153909.1| PREDICTED: hypothetical protein isoform 8 [Pan troglodytes]
          Length = 641

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/388 (15%), Positives = 128/388 (32%), Gaps = 41/388 (10%)

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           + E  + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +
Sbjct: 279 KSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLM 337

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F    +S+R LP       +  R+EL     G+ R R F   DA+ F    +        
Sbjct: 338 FDHRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKG 396

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                  ++   G         + P       E                   D       
Sbjct: 397 CLDFLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLE 438

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              ++      +     A Y    D+   ++ D++    + +   ++    F    ++  
Sbjct: 439 NSLNEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF-- 489

Query: 297 PMSATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +
Sbjct: 490 --NLTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPV 544

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
                 C +  +K+  +          D D G  +  +   A L  +   ++VG K    
Sbjct: 545 GP---TCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKIS 601

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHR 441
             V I+ R   +  + ++ E I      
Sbjct: 602 GTVNIRTRDNKVHGERTISETIERLQQL 629


>gi|145230415|ref|XP_001389516.1| threonyl-tRNA synthetase [Aspergillus niger CBS 513.88]
 gi|134055633|emb|CAK37279.1| unnamed protein product [Aspergillus niger]
          Length = 526

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 143/442 (32%), Gaps = 65/442 (14%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
            P D         L T  +  +S G   +LP G   ++ +   +R +  + G  E+  PT
Sbjct: 58  TPADYRALGTSQDLFTTSV--YSPGSPLFLPNGTHIINKLITFLRTQYLQYGFREVLTPT 115

Query: 74  LQSADLWVESGRYDSYGKEMLRLADR-----------NDKAMIYGPTHEEVMTDIFRSHI 122
           +    LW  SG + +Y  +M  +  R            D++    P +      +F+S  
Sbjct: 116 IYKRSLWEVSGHWQNYKDDMYEVRGRGATGDTDGEAGEDESYGLKPMNCPGHCLLFKSQT 175

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR LP  +       R+E+     G+ R R F   D + F    +             
Sbjct: 176 HSYRELPIRYADFSPLHRNEVSGSLSGLTRVRRFHQDDGHIFCRPQQIKGE-IASALGFV 234

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +    GL    +   + P                E     S +  +          D+
Sbjct: 235 DLVMTTFGLGPYRLVLSTRP----------------EKDFIGSLELWNSAEAQLREALDN 278

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMS 299
                ++ E   A Y    D+   +L D   +  ++S   +++     F    + +    
Sbjct: 279 TGREWAMNEGDGAFYGPKIDI---QLQDKAGKYHQLSTIQLDMNLPQRFGLEYQVAEGEE 335

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
                  GK   V +     G++    A++    +     WP  ++P +  ++ +   D+
Sbjct: 336 DYNPETPGKATPVMIHRANFGSLERFLALLI---EEYAGRWPFWLSPRQGIVLTVN-QDE 391

Query: 360 VCRDACEKIYARLSKVGCDVF-----------------------WDDMGEQIGSQFAVAD 396
                  +  A++S  G                            D  G+ +  +   A 
Sbjct: 392 AVVQQAHEAAAKIS--GFRALQPGQMGTDAPQPISSVDSTFLIDVDSSGQSLNKKIQRAK 449

Query: 397 LLGFPLQVIVGSKFVSDSKVEI 418
            + + L  I+G K V+ S++ +
Sbjct: 450 HMKYNLIFILGPKDVAASRITV 471


>gi|73981323|ref|XP_860781.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 5
           [Canis familiaris]
          Length = 636

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/405 (18%), Positives = 126/405 (31%), Gaps = 55/405 (13%)

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKA 103
           E  R G  E+  PTL SA LW  SG ++ Y ++M                      +   
Sbjct: 260 EYTRRGFSEVKTPTLFSAKLWELSGHWEHYQEDMFVLQPPGSDRLASSLSVCSTSHSTDT 319

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYS 162
           +   P +      +F    +S+R LP       +  R E      G+ R R F   DA+ 
Sbjct: 320 LALKPMNCPAHCLMFAHRPRSWRELPLRLADFGVLHRAEASGSLGGLTRLRCFQQDDAHI 379

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           F   P+  +            ++  LG         + P G                   
Sbjct: 380 FCA-PDQLEEEIQGCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------L 420

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                 D          ++      +     A Y    DVH   L D+L    +     +
Sbjct: 421 GESCLWDQAEQVLQRALEEFGEPWDLKPGDGAFYGPKIDVH---LHDALGRPHQCGTIQL 477

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +    F    ++       +KG  G       +    +G++  +  V+    +  G  WP
Sbjct: 478 D----FQLPLRFD----LQYKGQAGVLERPVLIHRAVLGSVERMLGVLA---ESYGGKWP 526

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGF 400
             ++PF++ +I +        +   +   RL   G     D D G  +  +   A L  +
Sbjct: 527 LWLSPFQVVVIPVG---AEQEEYAREAQQRLQAAGLVCDLDADSGLTLSRRVRRAQLAHY 583

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             Q +VG K  S   V I+ R      +  L E +       +  
Sbjct: 584 NFQFVVGQKEQSKKTVNIRTRDNRQLGERDLTEAVQRLLELQNTR 628


>gi|297664845|ref|XP_002810834.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Pongo abelii]
          Length = 436

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 93/226 (41%), Positives = 136/226 (60%), Gaps = 10/226 (4%)

Query: 3   RSKYFLP---------ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P          LQ+   D    S +LML+ G+I+  S G Y  LP   +A++ +
Sbjct: 42  LSRVFQPQNLREDRVLSLQDKSDDLTCKSQRLMLQVGLIYPASPGCYHLLPYTVRAMEKL 101

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             +I +E    G  ++++P+L  A+LW  + R+D  GKE+LRL DR+ K    GPTHEE 
Sbjct: 102 VRVIDQEMQAIGGQKVNMPSLNPAELWQATNRWDLMGKELLRLRDRHGKEYCLGPTHEEA 161

Query: 114 MT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T  I      SY+ LPF  YQ+  KFRDE RPRFG++R REF MKD Y+FD +PE ++ 
Sbjct: 162 ITALIASQKKLSYKQLPFLLYQVTRKFRDEPRPRFGLLRGREFYMKDMYTFDSSPEAAQQ 221

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +Y+ +  +Y  +F+RLGL  + ++A+ G IGG +SHEF +  D GE
Sbjct: 222 TYSLVCDAYCSLFNRLGLPFVKVQADVGTIGGTVSHEFQLPVDIGE 267


>gi|148982342|ref|ZP_01816719.1| threonyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
 gi|145960522|gb|EDK25885.1| threonyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
          Length = 304

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 103/332 (31%), Gaps = 39/332 (11%)

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F   +KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +     
Sbjct: 4   FNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHVFC-TEDQVQQEVKA 62

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                   +   G ++I ++  + P     S E                   D       
Sbjct: 63  CIEMVYDTYTTFGFENIVVKLSTRPEQRVGSDE-----------------MWDRAEADLK 105

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              + +     I E   A Y    +     L D L    +     ++       G     
Sbjct: 106 LALESMEIAYEIQEGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFALPERLG----- 157

Query: 297 PMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
              AT+ G D + H   M    I     R +  +IE              A         
Sbjct: 158 ---ATYVGEDNERHTPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVVMGIT--- 211

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +  ++I  +L K G  V  D   E+IG +     L   P  ++ G + +   
Sbjct: 212 ----DKQSEYVQEITKKLQKSGFRVKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAG 267

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ ++ R         +++ I+Y     S+ +
Sbjct: 268 EIAVRTRKGKDLGKFKVDDFISYIQAEVSSRK 299


>gi|241999440|ref|XP_002434363.1| glutamyl-tRNA synthetase, cytoplasmic, putative [Ixodes scapularis]
 gi|215497693|gb|EEC07187.1| glutamyl-tRNA synthetase, cytoplasmic, putative [Ixodes scapularis]
          Length = 1502

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/450 (15%), Positives = 140/450 (31%), Gaps = 78/450 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +     +++ +  MI  +   G Y   P      +N+   +     + G    
Sbjct: 1005 EAKKEENLPDWYSQVITKAEMIEYYDVSGCYILRPWAYSIWENIKEFLDTRIRKIGVQNC 1064

Query: 70   SVPTLQSA-DLWVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKS 124
              P   SA  L  E      +  E+  +    +  +       PT E VM   +   ++S
Sbjct: 1065 YFPMFVSAQALEREKTHVADFAPEVAWVTRSGNSDLAEPIAIRPTSETVMYPSYAKWVQS 1124

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ ++   T E +     K+   Y   
Sbjct: 1125 HRDLPLQLNQWCNIVRWEFKHPQPFLRTREFLWQEGHTAFATREEAVEEVYKILDIY--- 1181

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                                                           +  E      +  
Sbjct: 1182 ---------------------------------------------TAVYEELLALPVVRG 1196

Query: 245  LNSIVEQW-TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +  E++  A +  T + +              S RGI+     + G  +S      F+
Sbjct: 1197 RKTEKEKFAGADFTTTVEAYVPA-----------SGRGIQGATSHHLGQNFSKMFEIVFE 1245

Query: 304  GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------A 356
              + ++      +      R +  V+    D +G++ P  VA +++ ++           
Sbjct: 1246 DPETREKKFAFQNSWGLTTRTIGVVVMVHADNQGLVLPPRVACYQVVIVPCGITAAMSED 1305

Query: 357  HDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                    C+   A L   G     D       G +F   +L G P++V +G + +   +
Sbjct: 1306 QKAALIKFCQDFEATLDAAGVRCKGDYRDNYSPGWKFNHWELKGVPIRVEIGPRDMQQEQ 1365

Query: 416  -VEIKHRLTGIREDMSLEEVINYASHRFSN 444
             V ++ R TG +        +        N
Sbjct: 1366 FVAVR-RDTGEKLTYKTSTAVKEMKDLLEN 1394


>gi|149373221|ref|ZP_01892041.1| prolyl-tRNA synthetase [unidentified eubacterium SCB49]
 gi|149354255|gb|EDM42826.1| prolyl-tRNA synthetase [unidentified eubacterium SCB49]
          Length = 492

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/435 (17%), Positives = 159/435 (36%), Gaps = 88/435 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    + + A + ++   TG      P      ++  E    + + KE   +
Sbjct: 33  GCMVIKPYGFGIWERMQAELDKKFKETGHSNAYFPLFVPKSMFEAEEKNAEGFAKECAVV 92

Query: 97  AD-------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                                + ++ +I  PT E ++   ++  ++SYR+LP    Q   
Sbjct: 93  THYRLKNDDENAGKLIVDPNAKLEEELIVRPTSEAIIWSTYKGWVQSYRDLPLLINQWAN 152

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E+R R  + R+ EFL ++ ++   T + +     +M   Y                
Sbjct: 153 VVRWEMRTRLFL-RTAEFLWQEGHTAHTTKKEAIEESERMMNVY---------------- 195

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                  D   +F+                              +  L +  E++     
Sbjct: 196 ------ADFVQDFMA--------------------------IPVVKGLKTESERFAG--- 220

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E      + ++ G   + G  ++      F   +GK  YV   S+
Sbjct: 221 --------AEETYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFATKEGKQEYVWGTSW 272

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSK 374
           G+ + R++ A++ +  D KG++ P ++AP ++ ++ I  +D+      +A  ++ A L  
Sbjct: 273 GV-STRLMGALVMTHSDDKGLVLPPNLAPDQVVIVPIYRNDEQFDAVSEAANELMAALRA 331

Query: 375 VGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V +D+    + G +F   +L G P+++ +G K + +   E+  R T  +E +S + 
Sbjct: 332 KGVRVKFDNRDTHKPGWKFNEYELKGVPVRIAIGPKDLENGTFEVARRDTLTKEVLSKDV 391

Query: 434 VINYAS---HRFSNN 445
           ++++         NN
Sbjct: 392 IVDHVVGLMDEIQNN 406


>gi|114559281|ref|XP_001168852.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial isoform 5 [Pan
           troglodytes]
 gi|10434068|dbj|BAB14117.1| unnamed protein product [Homo sapiens]
 gi|55958997|emb|CAI15489.1| threonyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|119573934|gb|EAW53549.1| threonyl-tRNA synthetase-like 1, isoform CRA_b [Homo sapiens]
          Length = 588

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/417 (17%), Positives = 128/417 (30%), Gaps = 55/417 (13%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--------------- 94
            D +  + + E    G  E+  PTL S  LW +SG ++ Y ++M                
Sbjct: 202 RDQLRQLFKAEYAHRGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQS 261

Query: 95  -RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRS 152
                     +   P +      +F    +S+R LP          R E      G+ R 
Sbjct: 262 DDSTRHITDTLALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRL 321

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F  T +               ++  LG         + P G         
Sbjct: 322 RCFQQDDAHIFCTTDQLEAE-IQSCLDFLRSVYAVLGFSFRLA-LSTRPSGF-------- 371

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                           D           +      +     A Y    DVH   L D+L 
Sbjct: 372 ---------LGDPCLWDQAEQVLKQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALG 419

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIES 331
              +     ++    F    ++       +KG  G       +    +G++  +  V+  
Sbjct: 420 RPHQCGTIQLD----FQLPLRFD----LQYKGQAGALERPVLIHRAVLGSVERLLGVLA- 470

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGS 390
             +  G  WP  ++PF++ +I + +  +   +  ++    L   G     D D G  +  
Sbjct: 471 --ESCGGKWPLWLSPFQVVVIPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSR 525

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +   A L  +  Q +VG K  S   V I+ R      +  L E +       +   P
Sbjct: 526 RIRRAQLAHYNFQFVVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVELQNTRVP 582


>gi|291402378|ref|XP_002717441.1| PREDICTED: glutamyl-prolyl tRNA synthetase [Oryctolagus cuniculus]
          Length = 1460

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/424 (16%), Positives = 125/424 (29%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y   P      +++      E  + G      P   S   L  E      +  E+  
Sbjct: 992  SGCYILRPWAYSIWESIKDFFDAEIKKLGVENCYFPIFVSQSALEKEKTHVADFAPEVAW 1051

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1052 VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLR 1111

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y R++                          
Sbjct: 1112 TREFLWQEGHSAFATFEEAAEEVLQILDLYARVYE------------------------- 1146

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 1147 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISA---- 1179

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+ G   + G  +S      F+                G   R +  +I
Sbjct: 1180 -------SGRAIQGGTSHHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGLTTRTIGVMI 1232

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I             +     C     RL  V   V  D
Sbjct: 1233 MVHGDNMGLVLPPRVASVQVVVIPCGITNALSEEDKEALIAKCNDYCRRLLSVSIRVRAD 1292

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + + +   V ++ R TG +  ++  E       
Sbjct: 1293 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNCQFVAVR-RDTGEKLTIAENEAETKLQT 1351

Query: 441  RFSN 444
               +
Sbjct: 1352 ILED 1355


>gi|195144990|ref|XP_002013479.1| GL24160 [Drosophila persimilis]
 gi|194102422|gb|EDW24465.1| GL24160 [Drosophila persimilis]
          Length = 1725

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 125/422 (29%), Gaps = 73/422 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y            +      E  R G  E   P   S   L  E      +  E+  
Sbjct: 1256 SGCYILRHWSFAIWKFIKQWFDAEITRMGVKECYFPIFVSKAVLEKEKTHIADFAPEVAW 1315

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    D  +       PT E VM   +   I+SYR+LP    Q     R E +     +R
Sbjct: 1316 VTKSGDSDLAEPIAVRPTSETVMYPAYAKWIQSYRDLPIRLNQWNNVVRWEFKHPQPFLR 1375

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++           + +  ++                                  
Sbjct: 1376 TREFLWQE---GHTAFASQEEAVKEVLDILDL---------------------------- 1404

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     +  +       +    T+ +               Y  T +          
Sbjct: 1405 -------YALVYTHLLAIPVVKGRKTEKEKFA---------GGDYTTTVEAFISA----- 1443

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                  S R I+     + G  +S      ++  + +       +      R +  +I  
Sbjct: 1444 ------SGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVFQNSWGITTRTIGVMIMV 1497

Query: 332  SHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYARLSKVGCDVFWDDM 384
              D +G++ P +VA  +  ++     +   D+      DAC+K+   L   G     D  
Sbjct: 1498 HADNQGLVLPPNVACIQAIVVPCGITVNTKDEERAQLLDACKKLEQTLVGAGVRCEGDYR 1557

Query: 385  GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRF 442
                 G +F   +L G PL++ VG K +   + V ++ R TG +  + L +V    S   
Sbjct: 1558 DNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVR-RDTGEKITLPLADVEKKISALL 1616

Query: 443  SN 444
              
Sbjct: 1617 ET 1618


>gi|76801546|ref|YP_326554.1| prolyl-tRNA synthetase [Natronomonas pharaonis DSM 2160]
 gi|114152219|sp|Q3IS99|SYP_NATPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|76557411|emb|CAI48989.1| proline--tRNA ligase [Natronomonas pharaonis DSM 2160]
          Length = 482

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 141/420 (33%), Gaps = 76/420 (18%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P       L  E    D +  E+  +
Sbjct: 37  GFIVTRPRGYALWERLQDHLDGWFKETGVQNTYFPMFIPESYLEREKDIVDGFDPEVAWV 96

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D  ++ +   PT E ++T      ++SYR+LP    Q     R E        R+
Sbjct: 97  THGGHDELEERLAVRPTSESIITPFIAEWVRSYRDLPLRVNQWCSVVRWEATETKPFFRT 156

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           +EFL ++ ++   T E +          Y R                      L  E + 
Sbjct: 157 KEFLWQEGHTAHATEESAWDETMTRLEQYER----------------------LYEEVMA 194

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        I  +     +      A +    E L    P
Sbjct: 195 -----------------------------IPGMTGRKPEHDKFPGADTTTTIEALM---P 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           + K      ++ G   Y GT ++      +   D         S+G+ + R + A+I + 
Sbjct: 223 DGK-----SVQAGTSHYLGTSFAEAFDIEYTDEDETKQTAHTTSWGL-SWRALGALIMTH 276

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQ-IG 389
            D +G++ P ++AP ++ ++ I   D  +  ++    + A L +    V  DD  E+  G
Sbjct: 277 SDDQGLVIPPALAPTQVVVVPIWQADTEEAVKEYAADLAAELDEQ-FRVELDDRDERNPG 335

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-----IREDMS--LEEVINYASHRF 442
            +F   +L G PL++ +G   V D    + HR  G      RE ++  ++E +     + 
Sbjct: 336 FKFNEHELQGVPLRIEIGPNEVEDEAATLVHRPDGESDVAERESITDAVDEALETVYAKL 395


>gi|225571168|ref|ZP_03780166.1| hypothetical protein CLOHYLEM_07256 [Clostridium hylemonae DSM
           15053]
 gi|225159999|gb|EEG72618.1| hypothetical protein CLOHYLEM_07256 [Clostridium hylemonae DSM
           15053]
          Length = 480

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 129/415 (31%), Gaps = 66/415 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  ++LP G    + + A + +    TG   + +PTL   +L   E+   + +  E+   
Sbjct: 39  GCLNYLPNGYAIWELIQADLDKRFKETGVENVYLPTLIPENLLEKEADHVEGFAPEV--- 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                             +      E L
Sbjct: 96  -------------------------------------------------AWVTHGGMERL 106

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +       +       ++K   SY  +       +  +R E        S EF+     
Sbjct: 107 QERLCIRPTSETLFCDLWSKTVQSYRDLPKVWNQWNSVLRWEKTTRPFLRSREFLWQ--- 163

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA----ATSDVHNEKLFDSLP 272
                        +    E T     +  +   E    P+     A  +           
Sbjct: 164 -----EGHTLHATYEEAEERTIQMFHVYEDCYKETLAIPFVSGRKAEHEKFAGAQDTYTI 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++     +FG+ +       +   + + H     S+G  + R + A+I   
Sbjct: 219 EALMHDGKALQSATSHFFGSGFPDAFDIKYVDKNNQLHSAYETSWGW-STRSIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP +  +I I  H +   D    +   L K G  V  DD  +  G +F
Sbjct: 278 GDDSGLVLPPHVAPVECRIIPIAQHKEGVLDRANVLLDELKKAGYRVKIDDSEKSPGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +  ++LG P ++ +G K +  ++V +  R T  +  +SL+E+           + 
Sbjct: 338 SEQEMLGIPTRIEIGPKDIEKNQVVVVRRDTREKIIVSLDEIATKLRDILETIQE 392


>gi|306821412|ref|ZP_07455017.1| proline--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550534|gb|EFM38520.1| proline--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 482

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/410 (13%), Positives = 128/410 (31%), Gaps = 61/410 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+ + + +    TG      P L    L   E    + +  E+  +
Sbjct: 41  GFMVIKPYGFAIWENIQSYLDKRFKDTGHKNCYFPLLIPESLLNKEKEHVEGFAPEVAWV 100

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                + +                                                    
Sbjct: 101 THGGQEELGERLCVRPT------------------------------------------- 117

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI-PMRAESGPIGGDLSHEFIVLAD 215
                           +Y ++   Y +    +  +        +        H       
Sbjct: 118 --SETIICSMYSKWLRTYRELPYLYNQWCSVVRWEKTTRPFLRTSEFLWQEGHTLHETEA 175

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             + +       +   +  +      +  + S  E++   +A  +            E  
Sbjct: 176 EAQEETL-QMLSIYTELAEKILAIPVVTGIKSESEKFAGAHATYT-----------IEAM 223

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G     G  ++     T++  DGK       S+G+ + R++ A+I    D 
Sbjct: 224 MHDGKALQSGTSHNLGQHFTKAFDITYQSRDGKLENPYHTSWGV-STRLIGAIIMVHGDN 282

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAV 394
           +G++ P  +AP ++ +I I+   +   D   +IY+ L  +G  V  DD      G +F  
Sbjct: 283 RGLVLPPEIAPIQVVIIPIQQQKEGVLDKANEIYSSLKNLGIRVELDDDSKNSTGWKFNE 342

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ G PL++ +G + + ++ V I  R T  ++ +S++++        ++
Sbjct: 343 YEMKGVPLRIEIGPRDIQNNIVSISRRDTLEKDQISIDDIEKSVPSLLAD 392


>gi|323669590|ref|NP_001191177.1| bifunctional aminoacyl-tRNA synthetase [Danio rerio]
          Length = 1511

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 77/456 (16%), Positives = 139/456 (30%), Gaps = 79/456 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ +  MI  +   G Y   P      D +      E  + G    
Sbjct: 1016 EAKKEENLADWYSQVITKAEMIEYYDVSGCYVLRPWSYSIWDAIKEFFDREIKKLGVENC 1075

Query: 70   SVPTLQS-ADLWVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKS 124
              P   S A L  E      +  E+  +       +       PT E VM   +   ++S
Sbjct: 1076 YFPMFVSQAALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1135

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ ++   T E +     ++   Y R+
Sbjct: 1136 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATKEEATEEVLQILDLYARV 1195

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +                                                 E      +  
Sbjct: 1196 YE------------------------------------------------ELMAIPVVKG 1207

Query: 245  LNSIVEQW-TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +  E++    Y  T +                S R I+     + G  +S      F+
Sbjct: 1208 RKTEKEKFAGGDYTTTVEAFISA-----------SGRAIQGATSHHLGQNFSRMFEIVFE 1256

Query: 304  GADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------- 355
                            G   R +  +     D  G++ P  VA  ++ +I          
Sbjct: 1257 DPKKPGEKQLAYQNSWGITTRTIGVLTMVHGDNMGLVLPPRVACLQVIIIPCGITATLPE 1316

Query: 356  AHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            A   +  D C K  +RL K    V  D       G +F   +L G P++  VG K +   
Sbjct: 1317 AEKDLLLDQCSKYLSRLQKADIRVKADLRDNYSPGWKFNHWELKGVPIRFEVGPKDLKQG 1376

Query: 415  K-VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            + V ++ R TG +  +   +      +     +  L
Sbjct: 1377 QFVAVR-RDTGEKITVKEADAEKKIPNLLEEIQNNL 1411


>gi|309792694|ref|ZP_07687145.1| prolyl-tRNA synthetase [Oscillochloris trichoides DG6]
 gi|308225243|gb|EFO79020.1| prolyl-tRNA synthetase [Oscillochloris trichoides DG6]
          Length = 480

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 75/424 (17%), Positives = 142/424 (33%), Gaps = 73/424 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G   + P G    + +   + +    TG   +  P L     +  E+   D +  E+  +
Sbjct: 35  GCIVFKPTGWAIWEMMQRALDDRIKETGHSNVQFPLLIPKSFIMKEAEHVDGFAPEVAEV 94

Query: 97  ADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +      +  PT E ++   +   I+SYR+LP  + Q     R E+R R  + R+
Sbjct: 95  TRAGGEDLTEPYVIRPTSETIIGHFYSKWIRSYRDLPLLYNQWCNVMRWEMRTRPFL-RT 153

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EF+ ++                             G  +    AE+      + HE  V
Sbjct: 154 SEFIWQE-----------------------------GHTAHVNEAEAEAETLKILHE--V 182

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E  +                    I  L +  E++              L     
Sbjct: 183 YADFAEQVMA----------------VPVIRGLKTENEKFPG-----------ALRSYCI 215

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      R ++ G     G  ++     T+   +    +    S+G+ + R++ A+I + 
Sbjct: 216 EAMMQDGRALQAGTSHNLGQNFAKAFEITYTDHNNTVQHAWTTSWGV-STRLIGALIMTH 274

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK--VGC-DVFWDDMGE-QI 388
            D +G++ P  +AP ++ ++ I  +D   R+        L+    G      DD      
Sbjct: 275 SDDEGLVIPPRLAPIQVVVVPIFKNDAE-REKVMATVHALTSTWKGVLRFKIDDRDNLSP 333

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMSLEEVINYASHRFSNN 445
           G +F   ++ G P+++ VG K V    V I  R       +  +  E +           
Sbjct: 334 GFKFNEWEMKGVPVRIEVGPKDVEKGSVAIARRDIPGREGKSFVPQEGLTERIRDLLEAI 393

Query: 446 RPVL 449
           +  L
Sbjct: 394 QQAL 397


>gi|255066457|ref|ZP_05318312.1| threonine--tRNA ligase [Neisseria sicca ATCC 29256]
 gi|255049337|gb|EET44801.1| threonine--tRNA ligase [Neisseria sicca ATCC 29256]
          Length = 322

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 124/350 (35%), Gaps = 38/350 (10%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREF 155
                +     P +      IF + ++SYR+LP    +     R+E      G+MR R F
Sbjct: 4   TSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLMRVRGF 63

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           +  DA+ F    +    +        +RI+ + G   + ++    P     S +    A+
Sbjct: 64  VQDDAHIFCTEDQIVSEARAFN-ELLVRIYKQFGFHDVSVKLSLRPEKRAGSDDVWDKAE 122

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            G  +   +       +P E                  A Y    + H   + D+L  + 
Sbjct: 123 QGLREALTACGVEWDELPGE-----------------GAFYGPKIEYH---VKDALGRSW 162

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHD 334
           +     ++    F    +    + A +   +      V +    +G++     ++  +H 
Sbjct: 163 QCGTLQLD----FVLPER----LDAEYVTENNDRARPVMLHRAILGSLERFIGILIENHA 214

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           G   +W   V    +++       +   D C ++ A+L   G  V  D   E+IG +   
Sbjct: 215 GSFPLWLAPVQMVIMNIT------ENQADYCREVAAKLQAAGFRVELDLRNEKIGYKIRD 268

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
                FP Q++VG K   ++KV ++ R       + L++ I       ++
Sbjct: 269 NSQYRFPYQIVVGDKEKQENKVAVR-RKAEDLGSLDLDDFIAQLQQEIAD 317


>gi|330834227|ref|YP_004408955.1| prolyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
 gi|329566366|gb|AEB94471.1| prolyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
          Length = 480

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 88/416 (21%), Positives = 155/416 (37%), Gaps = 74/416 (17%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEML 94
             G+  W+P G K   NV ++IR+  + TG  E+  P L   +L   ES     + KE+ 
Sbjct: 35  GAGV--WMPYGFKIRHNVISLIRKLLDETGHEEILFPLLIPEELLKKESEHIRGFEKEVF 92

Query: 95  RLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            +     ++ +      PT E  +T +    I+ Y  LP  FYQI   FR E +    ++
Sbjct: 93  WVTQGGEEKLETRFALRPTSEVAITLMESLWIRGYSQLPRKFYQIVSVFRYETKATRPLI 152

Query: 151 RSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           R RE    K+A++   T E +     +    Y + F  LG+  +  +             
Sbjct: 153 RVRELTTFKEAHTIHETYEDAAKQVKEAVEIYSKFFDILGIPYLISK------------- 199

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                                                     W     A   +  + L  
Sbjct: 200 ---------------------------------------RPDWDKFAGAEYTIALDTLM- 219

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             P+      R +++G   + G  ++  M    + ADG   Y    SYGI + RV+A VI
Sbjct: 220 --PDG-----RALQIGTAHHLGQHFTKAMDYKIQRADGTLTYPHQTSYGI-SDRVIATVI 271

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYARLSKVGCDVFWDDM- 384
             + D  G +    +AP +  +I I    +          E++ + L+  G     D   
Sbjct: 272 SINGDDHGPVLSPVIAPIEAVIIPIPGKSEEDTKKVFSYAEEVRSTLASNGIRAVMDSSE 331

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +  G +F + +L G P++V  G + ++   V +K R T   + +  E+++    +
Sbjct: 332 DKTPGEKFYIWELKGVPIRVETGVREMNSGSVYLKRRDTLEGKVVKREDLVKELKN 387


>gi|326804116|ref|YP_004321934.1| proline--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650465|gb|AEA00648.1| proline--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 484

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 151/455 (33%), Gaps = 84/455 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRT-GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
            SK++L  +            K  L   G +     G   + P G    + +     ++ 
Sbjct: 14  FSKWYLQSI-----------QKADLFAYGPVR----GTMVFKPNGYALWEKIKTEFDKKF 58

Query: 62  NRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTD 116
             +G      P L     +  E+   + +  E+  +    D+ +       PT E +  +
Sbjct: 59  KASGVKNCYFPMLIPESFFKKEADHVEGFAPELPWVTRAGDEELEEPVALRPTSETLFGN 118

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
                I SYR+LP    Q    FR E R     +R+ EFL ++                 
Sbjct: 119 AMSDWINSYRDLPMELNQWANVFRWEKR-TLPFLRTSEFLWQEG---------------- 161

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                               A          H   V  +T E  +               
Sbjct: 162 ----------------HCAYASEEEARERTMHFLKVYQETVEDLLA-------------- 191

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                     +  E++              +     E      + ++ G   Y GT ++ 
Sbjct: 192 --LPVYAGQKTPSEKFAGG-----------VDTYSIEAMVKDTKSVQAGTSHYLGTNFAE 238

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK- 355
                +   + +  Y    S+G+ + R++  +I +  D KG+++P  +AP +I+LI +  
Sbjct: 239 AFDIKYLNTENQHVYAHTSSWGV-STRLIGTMIMAHGDEKGVVFPPKMAPIQIALIPVGN 297

Query: 356 -AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +       E I   L   G   + DD     G ++  A++ G PL++  G + + + 
Sbjct: 298 VKKNPEVLTRLEAIEKDLQAAGYSTYLDDSNNSAGYKYNEAEVKGVPLRIEFGPRDMENG 357

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +  IK R    +E ++L+++++  +      +  L
Sbjct: 358 QCMIKMRDLEDKEAVNLDDLLDKVASEMETMQKRL 392


>gi|218513382|ref|ZP_03510222.1| prolyl-tRNA synthetase [Rhizobium etli 8C-3]
          Length = 105

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 76/104 (73%), Positives = 92/104 (88%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S+YF+PIL+ENP++AEI SH+LMLR GMI Q S+GIYSWLPLG++ LD VNAIIREE
Sbjct: 1   MRLSRYFMPILKENPKEAEIVSHRLMLRAGMIRQQSQGIYSWLPLGKRVLDKVNAIIREE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           QNR GAIE+S+PTLQSA+LW ESGRYD+YGKEMLR+ DR ++ M
Sbjct: 61  QNRAGAIELSMPTLQSAELWQESGRYDAYGKEMLRIKDRQERPM 104


>gi|169836559|ref|ZP_02869747.1| prolyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 289

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 77/218 (35%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 210 FIVLADTGETQVFCSKDFMDFPIP-SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           F    +  E       + + +    +   +  D   +N  +E     Y   +D+   +  
Sbjct: 55  FAGSYEKKEGLTVVIDETVKYVRNFALGANKKDYHFINVNLEDL--HYDIVADIRTARAG 112

Query: 269 DSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           D  P+ K V   ARG+EVGHIF  G KYS  + A     +GK   +QMG YGIG  R+++
Sbjct: 113 DVSPDGKGVLKIARGMEVGHIFKLGDKYSKALDAKVLDENGKQQVIQMGCYGIGVSRLMS 172

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           AVIE  HD  GIIWP S+AP+   +I     D+   +  E+IY  L     DV  DD  E
Sbjct: 173 AVIEQKHDDFGIIWPKSIAPYIADVIIANVKDETQVNVAERIYEALKNENIDVVLDDRNE 232

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           + G +F  ADL+GFPL+++ G K  ++  VE+K R TG
Sbjct: 233 RAGFKFKDADLIGFPLKIVAG-KGAANGIVEVKDRATG 269


>gi|254584943|ref|XP_002498039.1| ZYRO0G00704p [Zygosaccharomyces rouxii]
 gi|238940933|emb|CAR29106.1| ZYRO0G00704p [Zygosaccharomyces rouxii]
          Length = 681

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/423 (16%), Positives = 137/423 (32%), Gaps = 73/423 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      +++     +     G      P   S+  L  E    + +  E+  
Sbjct: 208 SGCYILRPPSYSIWESIQRWFDDRIKAMGVQNAYFPLFVSSRVLEKEKDHVEGFAPEVAW 267

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   +   I+SYR+LP    Q     R E +     +R
Sbjct: 268 VTKAGSSDLEEPVAIRPTSETVMYPYYAKWIRSYRDLPLKLNQWNSVVRWEFKHPQPFLR 327

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT   ++    ++   Y  ++                          
Sbjct: 328 TREFLWQEGHTAHLTKADAEEEVLQILDHYAGVYE------------------------- 362

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                  E      +    +  E++      T       +   +
Sbjct: 363 -----------------------ELLAVPVVKGRKTEKEKFAGGVFTT------TVEGYI 393

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVI 329
           P     + RGI+     + G  +S   + + +   G DH            + RV+  + 
Sbjct: 394 P----QTGRGIQGATSHHLGQNFSKMFNVSVENPLGPDHPKVNVFQNSWGLSTRVIGVMT 449

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLSKVGCDVFWD 382
               D KG++ P  V+ ++  ++ +    +   +          +I +RL K G   F D
Sbjct: 450 MIHSDNKGLVIPPRVSQYQAVVLPVGITKKTTEEQRAHIHSSAREIESRLKKAGVRAFGD 509

Query: 383 -DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +     G +FA  +L G PL++  G K +  ++V +  R    +  + L+E+       
Sbjct: 510 YNDNYTPGWKFAQYELKGIPLRLESGPKDIESNQVTVVRRNDFRKVTVKLDELETRIPEL 569

Query: 442 FSN 444
              
Sbjct: 570 LEE 572


>gi|292655033|ref|YP_003534930.1| prolyl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291371489|gb|ADE03716.1| prolyl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 488

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 73/419 (17%), Positives = 134/419 (31%), Gaps = 68/419 (16%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKE 92
           +   G     P G    +++   +  E  +TG      P       L  E    + +  E
Sbjct: 36  EGMSGFIVTRPRGYALWESIQNYLDGEFKKTGVQNAYFPLFIPESYLEREKDIVEGFDPE 95

Query: 93  MLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  +     + +       PT E ++       ++S+R+LP    Q     R E      
Sbjct: 96  VAWVTHGGHEELEERLAVRPTSESIIAPYMAQWVRSHRDLPLRVNQWASVVRWEATETKP 155

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R++EFL                                          +     D + 
Sbjct: 156 FFRTKEFL-------------------------------------WQEGHTAHETRDGAW 178

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +     +T          + D            I  L     +      A +    E L 
Sbjct: 179 D-----ETMTRLSQYQSLYEDVLA---------IPVLRGAKPEHDKFPGADTTTTVEALM 224

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
              P+ K      ++ G   Y GT ++     T+   D  +      S+G+ + R + A+
Sbjct: 225 ---PDGK-----SVQAGTSHYLGTSFAEAFDLTYTTEDEDEEPAHTTSWGL-SWRSLGAL 275

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGE 386
           I +  D +G++ P ++AP ++ ++ I   D  +   D  + I   L   G  V  D   E
Sbjct: 276 IMTHSDDQGLVLPPTIAPEQVVIVPIWQADTQEKVLDYAKDIAEDLEDAGVRVELDARDE 335

Query: 387 Q-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  G +F   +L G P++  +G   V D  V   HR  G   ++  E +      +F  
Sbjct: 336 RNPGFKFNEWELKGVPVRFEIGPNEVDDDVVTAVHRPDGDSVELDRENIAEAVQAQFDE 394


>gi|212223716|ref|YP_002306952.1| prolyl-tRNA synthetase [Thermococcus onnurineus NA1]
 gi|212008673|gb|ACJ16055.1| prolyl-tRNA synthetase [Thermococcus onnurineus NA1]
          Length = 482

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 130/414 (31%), Gaps = 67/414 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRL 96
           G+  WLP G K + N+   I  E  RTG  E+  P L    +   E+     +  E+  +
Sbjct: 34  GMNIWLPYGLKIMRNIERFIHAEMERTGHDEVLFPALIPETEFQKEAEHIAGFEGEVFWV 93

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                  +                                               +  + 
Sbjct: 94  THAGHDPLDIKLILRP------------------------------------TSETAMYS 117

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           M   +         K         Y     R  ++   +             E     D+
Sbjct: 118 MFALWIRSHADLPFKVYQIVNTYRYETKHTRPLIRVREI---------SRFFEAHTAHDS 168

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY----AATSDVHNEKLFDSLP 272
            E               +E    +D+   +++ +    PY        D      +    
Sbjct: 169 FED--------------AERQIKEDLEIFDNLAKFLAIPYIVSKRPDWDKFPGAYYSLGA 214

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      R +++G +  +   ++      ++  +G   YV   ++G+ + R++AAVI   
Sbjct: 215 EVMMPDGRTLQIGTMHNYRQNFAKAYEILYETENGDHEYVHQTTFGM-SERLLAAVIAIH 273

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQ--VCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            D +G++ P ++AP ++ ++ I   D          +I   L   G  V  D+   + G 
Sbjct: 274 GDDRGMVLPPTIAPIQVVIVPIPKKDAGADVFTYAREIAEELRTAGLRVHVDERDIRPGR 333

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +F   +L G PL++ VG + V   K  +  R T  +E +  + ++         
Sbjct: 334 KFYDWELKGVPLRIEVGPRDVEGRKAVLARRDTLTKETVERDRIVEAVRRTLDE 387


>gi|311029306|ref|ZP_07707396.1| prolyl-tRNA synthetase [Bacillus sp. m3-13]
          Length = 477

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 146/412 (35%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   + +    TG   + +P      L   E    + +  E+  +
Sbjct: 38  GSMIIRPYGYALWENIKDALDKRIKETGHENVYMPLFIPESLLQKEKDHIEGFAPEVAWV 97

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E +  + +++ I SYR+LP  + Q     R E   R  + R+
Sbjct: 98  THGGDEKLQERLVVRPTSEVLFGEHYKNIIHSYRDLPKLYNQWANVVRWEKTTRPFL-RT 156

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E +     KM                                  V
Sbjct: 157 LEFLWQEGHTCHETDEQAHEETVKMLN--------------------------------V 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+  E  +          I  + T+ +               Y   S +H+        
Sbjct: 185 YAEICENILAIP------VIKGQKTEKEKFAGAKYT-------YTIESLMHD-------- 223

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + ++     + G  ++      F   +GK  YVQ  S+G    R++ A+I   
Sbjct: 224 ------GKALQSATSHHLGDGFAKAFGIQFLNREGKQEYVQQTSWGF-TTRIIGAMIMVH 276

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D +G++ P  +AP ++ ++ I  H +   D    +  +LS+    V  D   ++ G +F
Sbjct: 277 GDDRGLVVPPRIAPTQVMIVPIAQHKEGVLDFAYDLKEKLSEF-IRVGIDASDKKPGWKF 335

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G PL++  G + +   +V +  R TG +    +E +         +
Sbjct: 336 NEYEMKGIPLRLEAGPRDIEQQQVVLVRRDTGEKLITPMEGLEAKIQEILED 387


>gi|300123658|emb|CBK24930.2| unnamed protein product [Blastocystis hominis]
          Length = 457

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 115/430 (26%), Positives = 194/430 (45%), Gaps = 54/430 (12%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
           +YS+LPLGQ+ LD V  II       GA +M +P +Q+ + W++SGR D  GKE+  L D
Sbjct: 1   MYSFLPLGQRVLDEVEKIIDRNLETIGAQKMQMPIVQNLNRWMKSGRRDQIGKELYTLKD 60

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           R  + +   PT+EEV+T++ +  + +  N P   YQ   KFRDE+R + GV+RS+EFLM 
Sbjct: 61  RKGQELCLSPTNEEVITELVKDLVATPSNYPLMLYQTSPKFRDEMRLKAGVLRSKEFLMM 120

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           D YSFD   + +  +++++   +  IF  L +    + A++G +GG  S E+      GE
Sbjct: 121 DLYSFDTNLKKANETFDQVDTCFSNIFRELEIPVEALEADNGIMGGSRSKEYQCCCGVGE 180

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            +V          + + +T    +I      E +                     N+ + 
Sbjct: 181 DRVTRCSKCGYKSLYTSSTSIPTVID-YFFSETF---------------------NQLLF 218

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +E+GH F  G +YS     T      +   +QMG YG+G  R+V ++ E      GI
Sbjct: 219 QQSLELGHSFVLGDRYS-----TLFNLQNRGSPLQMGCYGLGVSRIVGSLFELFGHSSGI 273

Query: 339 IWPDSVAPFKISLINIKA---------HDQVCRDACEKIYARLSKVGCDVFWDDMGE-QI 388
           ++PD +  F + ++N              +  R    ++   L      + +DD  E   
Sbjct: 274 LFPDPITTFDVVVLNTGTPIDRVFESEKTEAARAKTAELLDALGDA-LRICFDDRDELSA 332

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIK------HRL----------TGIREDMSLE 432
           G++   A+L+G  + VI G +F     +E++       R            G  E    E
Sbjct: 333 GNRLMDAELMGARVAVIAGKEFAMGGNLEVRLLHRNVIRDVWRNEEMGKRGGNVETKKKE 392

Query: 433 EVINYASHRF 442
           E+ +    + 
Sbjct: 393 EISDVLREKI 402


>gi|45185919|ref|NP_983635.1| ACR233Wp [Ashbya gossypii ATCC 10895]
 gi|44981709|gb|AAS51459.1| ACR233Wp [Ashbya gossypii ATCC 10895]
          Length = 562

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 77/205 (37%), Positives = 115/205 (56%), Gaps = 2/205 (0%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           H+L+   G I Q   G+  WLPLG + L NV  I+R+  +  G  E+ + TL    LW  
Sbjct: 33  HELLQGLGYIRQSQSGLVHWLPLGLRCLRNVENIVRKRMDECGGQELQLSTLSPETLWQR 92

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +GR+++  KE+ +L D   +      T EE +T +    ++SY++LP   YQI  K+RDE
Sbjct: 93  TGRWEN--KELFKLRDAKGRNYCLSATCEEDVTWLMSECLESYKDLPSLVYQIGTKYRDE 150

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           LRPR G++RSREFLMKDAYSF    + +   ++KM   Y +IF  L +      A+ G I
Sbjct: 151 LRPRGGLLRSREFLMKDAYSFHADSQDAMQMFHKMKQVYDQIFTDLKVPFKSAAADCGSI 210

Query: 203 GGDLSHEFIVLADTGETQVFCSKDF 227
           GG+LS E+  + + GE  ++     
Sbjct: 211 GGELSREYHYIHEKGEDVLYSCNSC 235



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           +L     +    +   IEVGH FY G  YS  + A  +    +   ++MG YGIG  R+V
Sbjct: 365 ELCGDCGKGTLDARNSIEVGHCFYLGRTYSEALGAAVRMRTNETTTLEMGCYGIGISRLV 424

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A+ + + D +G+ W  S        +N    D+  R     + + LS    +      G
Sbjct: 425 GAIADVTRDSQGLCW-PSCVAPYKVSLNYAGEDENVR----TVRSLLSLEPYES---PAG 476

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             +G+   ++  LG PL VIVG K     ++E++ R 
Sbjct: 477 TSLGASLQLSQQLGIPLSVIVGKKSWPHVEIEVRGRR 513


>gi|189499811|ref|YP_001959281.1| prolyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
 gi|259511582|sp|B3EP23|SYP_CHLPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189495252|gb|ACE03800.1| prolyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
          Length = 481

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 146/418 (34%), Gaps = 69/418 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG +    P       +  E+   + +  E   +
Sbjct: 33  GCMVIRPNGYAIWEKMQAALDGMFKATGHVNAYFPLFIPESYIQKEADHIEGFAPECAVV 92

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E V+   ++  I+SYR+LP    Q     R E+R R  + R+
Sbjct: 93  THGGGEELAEKLYVRPTSETVIWASYKKWIQSYRDLPLLINQWANVVRWEMRTRLFL-RT 151

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   TPE ++    +M   Y               A    IG     E   
Sbjct: 152 SEFLWQEGHTAHATPEEAQDEVLRMINVYKTFAEEY-------MAMPVLIGRKTDSEKFA 204

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD                                  E W                    
Sbjct: 205 GAD----------------------------------ETW------------------CI 212

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G     G  ++      F+  +G   YV   S+G+ + R++ A+I + 
Sbjct: 213 EAMMQDKKALQAGTSHNLGQNFAKAFDCQFQSKNGTLEYVWATSWGV-STRLIGALIMAH 271

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGS 390
            D +G++ P  +A  ++ ++ I   D Q   +    +   L+  G   F DD  +   G 
Sbjct: 272 SDDRGLVLPPKLASRQVVIVPILRGDKQAVAEKAHALADELNSNGIHAFVDDSEQNSPGW 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-VINYASHRFSNNRP 447
           +FA  +L G P+++ +G + +S +      R TG ++ ++L++      S      + 
Sbjct: 332 KFAEYELQGIPVRLEIGPRDISSNICIAARRDTGEKQQIALDDTFAASISSLLDAIQQ 389


>gi|269468318|gb|EEZ79994.1| threonyl-tRNA synthetase [uncultured SUP05 cluster bacterium]
          Length = 369

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 60/372 (16%), Positives = 112/372 (30%), Gaps = 38/372 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD         L    + + + G+  W   G      V   +R       
Sbjct: 34  YLYRLEEAEKRDHRKIGKTQDLF--HMQEEAPGMVFWHEKGWTLYQIVEQYMRSVFRDND 91

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P L    LW +SG +D +G  M       ++     P +      I+   +KSY
Sbjct: 92  YKEVHTPQLIDKSLWEKSGHWDKFGDAMFT-TSSENRDYAVKPMNCPAHIQIYNQGLKSY 150

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F+  D + F  T    +   +        +
Sbjct: 151 RDLPLRLAEFGSCHRNEPSGTLHGIMRVRNFVQDDGHIFC-TENQIQDEVSTFIDLTFDV 209

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G +++ ++  + P     S E                   D    +     D    
Sbjct: 210 YKNFGFENVDIKLSTRPENRVGSDE-----------------VWDRAEAALAEALDAKGI 252

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              + E   A Y    +     L D L    +     ++    F    + +    A    
Sbjct: 253 KWDLQEGEGAFYGPKIEF---VLKDCLDREWQCGTLQVD----FSMPERLNAHYIAE--- 302

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
            + K   V +    +G++     ++   ++G    W             I    +   D 
Sbjct: 303 DNSKQTPVMLHRAIVGSLERFVGILIEHYEGAFPSW------LAPIQAVILNISEKQHDF 356

Query: 365 CEKIYARLSKVG 376
              +  +L   G
Sbjct: 357 VANVEKKLKGGG 368


>gi|315928700|gb|EFV07980.1| Proline-tRNA ligase [Campylobacter jejuni subsp. jejuni 305]
          Length = 347

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKLFDSLPEN--KRVSA 279
             ++DF + +E          +  +              D+   K  D   +   K   +
Sbjct: 125 DFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKEGDCCVKCGAKLKQS 184

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +GIEVGHIF  G KYS  M+A F   +GK     MG YGIG  R++A  IE++HD KG I
Sbjct: 185 KGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSRLLAVAIEANHDEKGCI 244

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           W  ++APF + +I     D+   +   K+Y  L+ +G +V  DD  E+ G +    +L+G
Sbjct: 245 WNKTLAPFVLEIIVSNLKDEKALEFANKLYRDLTNLGLEVLLDDRNERFGVKMNDFELMG 304

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           FP  +++G K + ++++E+  R   ++E +  +E++     + 
Sbjct: 305 FPYALVIG-KGLENNEIELIQREGLVKELIKTDELMEILKKKV 346


>gi|307200437|gb|EFN80646.1| Bifunctional aminoacyl-tRNA synthetase [Harpegnathos saltator]
          Length = 1483

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 136/434 (31%), Gaps = 76/434 (17%)

Query: 28   RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
            ++GMI  +   G Y + P        +   I  E    G  E   P   +   L  E   
Sbjct: 999  KSGMIEYYDVSGCYIFRPWSFMMWKVIKDYIDREITALGVQECYFPIFVTRAVLEKEKAH 1058

Query: 86   YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
               +  E+  +    D  +       PT E VM   +   ++S   LP    Q     R 
Sbjct: 1059 IADFAPEVAWVTKCGDSDLAEPVAIRPTSETVMYPAYAKWLRSDTELPLKLNQWNNVVRW 1118

Query: 142  ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            E +     +R+REFL ++ ++   T + ++     +   Y R++                
Sbjct: 1119 EFKDPKPFLRTREFLWQEGHTAFATKKEAEEEVLTILDLYSRVYE--------------- 1163

Query: 202  IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATS 260
                                             E      I    +  E++    Y  T 
Sbjct: 1164 ---------------------------------ELLAVPVIKGRKTEKEKFAGGDYTTTV 1190

Query: 261  DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            +                S R I+     + G  +S   +   +GA   +    +     G
Sbjct: 1191 EAFISA-----------SGRAIQGATSHHLGQNFSKMFNIQVEGATESEEKTFVYQNSWG 1239

Query: 321  -AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARL 372
               R +  +I    D +G++ P  VAP +  LI             +     CEK+   L
Sbjct: 1240 LTTRTIGVMIMVHGDDRGLMVPPMVAPIQAVLIPCGIAASTTMEQKERLNYECEKLRTEL 1299

Query: 373  SKVG-CDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             ++G   +  D    +  G +F   +L G P+++ +G   V   +V    R    R  + 
Sbjct: 1300 LEIGKFRMGVDYRNNRTPGWKFNHWELKGVPVRIELGPAEVEKHQVTFVCRDNLERHTVP 1359

Query: 431  LEEVINYASHRFSN 444
             ++VI+       N
Sbjct: 1360 RDQVISALHSLLKN 1373


>gi|320593564|gb|EFX05973.1| prolyl-tRNA synthetase [Grosmannia clavigera kw1407]
          Length = 554

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 141/428 (32%), Gaps = 74/428 (17%)

Query: 27  LRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVES 83
           L+  MI  ++   G Y   P      + +    ++     G  E S P   SA  L  E 
Sbjct: 66  LKAEMIEYYNEIAGFYILRPASMYIWNVIRKWFQQRIEHMGVEETSFPMFLSAKSLEKEK 125

Query: 84  GRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +    DK +       PT E VM   +   I+S+R+LP    Q     
Sbjct: 126 DHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLRLNQWNSVV 185

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +L           
Sbjct: 186 RWEAKQTTPFLRAREFLWQEGHTAHLTEELAGEEVLEILELYAGVYEQL----------- 234

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                                     +    +  E++   Y  T
Sbjct: 235 -------------------------------------LAVPVVRGRKTENEKFAGGYYTT 257

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  +   +P N     RGI+       G  +S     T +    K  +  +     
Sbjct: 258 ------TVEGYIPTNG----RGIQGATSHCLGQNFSKMFDITVEDPQVKGQHRHVWQNSW 307

Query: 320 G-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYAR 371
           G + RV+  ++    D KG++ P  +A  +  LI +                 C+++ A+
Sbjct: 308 GLSTRVIGVMVMIHGDDKGLVLPPRIAKIQAILIPVGLNAKMTADEKAAHVARCDELAAQ 367

Query: 372 LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +   G  V  D   G     +F   +L G PL++  G K    + +    R T  +  + 
Sbjct: 368 IKAAGVRVEVDVREGYTPAWKFNDWELKGVPLRLEFGPKDREKNVISFARRDTAEKGTIP 427

Query: 431 LEEVINYA 438
           L  +    
Sbjct: 428 LGALATDI 435


>gi|256424918|ref|YP_003125571.1| prolyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
 gi|256039826|gb|ACU63370.1| prolyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
          Length = 493

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 163/446 (36%), Gaps = 87/446 (19%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+++ G+    +  G     P G    + +  ++  +   TG      P       L  E
Sbjct: 19  LIIKGGLADYSAVRGCMVIKPYGFGLWEGMRDVLDAKFKETGHQNAYFPLFIPKSFLSKE 78

Query: 83  SGRYDSYGKEMLRLADRN--------------------DKAMIYGPTHEEVMTDIFRSHI 122
           +   D + KE   +                        ++ +I  PT E ++ + ++  I
Sbjct: 79  AEHVDGFAKECAVVTHHRLMQNPDPNVKGLVVDPEAKLEEELIVRPTSETIIWNTYKDWI 138

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +SYR+LP    Q     R E+R R  + R+ EFL ++ ++   T E +     +M     
Sbjct: 139 QSYRDLPLLINQWANVVRWEMRTRLFL-RTAEFLWQEGHTAHATAEEAIAETRQMLE--- 194

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                                        V AD  E  +                    +
Sbjct: 195 -----------------------------VYADFAENYMA----------------LPVV 209

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             + S  E++              L     E      + ++ G   + G  ++      F
Sbjct: 210 RGVKSPAERFAG-----------ALDTYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKF 258

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ--- 359
              + K  YV   S+G+ + R++ A++ +  D  G++ P  +AP ++ ++ I   ++   
Sbjct: 259 SNKENKQEYVWATSWGV-STRLIGALVMAHSDDDGLVLPPRIAPLQVVIVPIYKGEEQKS 317

Query: 360 VCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                 ++I + L K+G  V +DD    + G +FA  ++ G P+++ +G++ + ++  E+
Sbjct: 318 KIDAKVDEIISGLKKLGIRVKYDDSDNARPGWKFAEYEMKGVPVRIALGARDLENNVAEV 377

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
             R T  +E +SL+ +    S     
Sbjct: 378 ARRDTKTKESLSLDGLAERISALLEE 403


>gi|156937156|ref|YP_001434952.1| prolyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
 gi|172044461|sp|A8A9E3|SYP_IGNH4 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|156566140|gb|ABU81545.1| prolyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
          Length = 478

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 82/415 (19%), Positives = 144/415 (34%), Gaps = 74/415 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G+  W P G K    V  IIR+  + TG  E+  P L    L   ES     +  E+  +
Sbjct: 32  GMGVWPPFGFKLRKLVLNIIRDLLDSTGHEEVLFPVLIPKTLLEKESEHIRGFEGEVFWV 91

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +  D  +   PT E  ++ +    I SY+ LP   YQI   +R E +    ++R 
Sbjct: 92  TKGGHEDLDVPLALRPTSETAISYMESFWISSYKQLPMKLYQIVPVYRYETKATRPLIRL 151

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           RE                                                      E   
Sbjct: 152 RE-------------------------------------------------VSTFKEAHT 162

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS--IVEQWTAPYAATSDVHNEKLFDS 270
             ++ E     +       I      FD +           W     A   V  + +   
Sbjct: 163 AHESFE----GADSQCAEAIEIYKKVFDRLGIPYMISQRPPWDKFAGALYTVAFDTVM-- 216

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            P+      R +++G + + G  +S+P    F   DG   YV   SYG+ + RV+A+++ 
Sbjct: 217 -PDG-----RVLQIGTVHHLGQNFSVPFEVRFHTEDGDKDYVWQTSYGL-SDRVIASLVA 269

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYARLSKVGCDVFWDDMGE 386
              D +G++ P  VAP ++ ++ I   ++       +  +++   L   G     DD  E
Sbjct: 270 VHGDERGLVLPPEVAPVQVVIVPIPQKEEEQQRKVLEEAKRVEEELKARGWRTVLDDRDE 329

Query: 387 -QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              G+++   +L G P ++ +G K V   ++ +  R    R  +   E+      
Sbjct: 330 LTPGAKYYEWELKGVPFRIEIGKKEVEGDELTVARRDLKKRVKVKKGEIHQRLKE 384


>gi|78188687|ref|YP_379025.1| prolyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
 gi|114152180|sp|Q3ASP3|SYP_CHLCH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78170886|gb|ABB27982.1| prolyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
          Length = 481

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 150/418 (35%), Gaps = 69/418 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG +    P       +  E+   + +  E   +
Sbjct: 33  GCMVIRPNGYAIWEKMQAALDRMFKETGHVNAYFPLFIPESFIAKEAEHIEGFAPECAVV 92

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E ++   ++  I+SYR+LP    Q     R E+R R  + R+
Sbjct: 93  THGGGQELAEKLYVRPTSETIIWSSYKKWIQSYRDLPLLINQWANVVRWEMRTRLFL-RT 151

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M   Y                           E++ 
Sbjct: 152 TEFLWQEGHTAHATHEEAQEEVLRMINVYKTFA----------------------EEYMA 189

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        I+   S  E++              L     
Sbjct: 190 --------------------------LPVILGKKSDSEKFAG-----------ALETFCI 212

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G     G  ++      F+  +    YV   S+G+ + R++ A+I + 
Sbjct: 213 EAMMQDGKALQAGTSHDLGQNFAKAFDCKFQTHEKTLEYVWATSWGV-STRLIGALIMAH 271

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGS 390
            D +G++ P  +A  ++ +I I   D +      + I A L+K G   F D   +   G 
Sbjct: 272 SDDRGLVLPPRLATRQVVIIPILKGDKESVLHHADNIAAALTKAGISAFVDSSEQNSPGW 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-VINYASHRFSNNRP 447
           +FA  +L G PL++ +G + + +    +  R T  + +++L++ ++   +   ++ + 
Sbjct: 332 KFAEYELQGIPLRLELGPRDIKNGMCVVARRDTLEKTEIALDDRLVMSINEILNDIQQ 389


>gi|322700868|gb|EFY92620.1| prolyl-tRNA synthetase [Metarhizium acridum CQMa 102]
          Length = 556

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 140/434 (32%), Gaps = 74/434 (17%)

Query: 27  LRTGMIH--QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVES 83
           L+  M+   Q   G +   PL       +           G  E S P   S   L  E 
Sbjct: 66  LKAEMVEYYQEISGFFVLRPLSMHIWSTIRKWFSGHIEELGVEEASFPLFLSKTSLDKEK 125

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              D +  E+  +      + D  +   PT E VM   +   I+S+R+LP    Q     
Sbjct: 126 DHVDGFAPELAWVERAGDKKLDVPVAIRPTSEAVMYPYYAKWIRSHRDLPLRLNQWNSVV 185

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +L           
Sbjct: 186 RWEAKQTTPFLRTREFLWQEGHTAHLTEELAGEEVLEILELYAGVYEKL----------- 234

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                                     +    +  E++   Y  T
Sbjct: 235 -------------------------------------LAVPVVRGKKTENEKFAGGYYTT 257

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  +   +P N     RGI+       G  +S     T +    K  +V +     
Sbjct: 258 ------TVEGYIPSNG----RGIQGATSHCLGQNFSKMFQITVEDPQNKGQHVHVWQNSW 307

Query: 320 G-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-------QVCRDACEKIYAR 371
           G + RV+  ++    D KG++ P  VA  ++  I +  +        Q   D  E + A 
Sbjct: 308 GLSTRVIGVMVMVHGDDKGLVLPPRVAQTQVIFIPVGINKNTTPEDRQKHEDQIEDMRAT 367

Query: 372 LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L K G     D   G     +F   ++ G P+++  G K  +   V    R TG +  + 
Sbjct: 368 LKKAGVRTQSDWREGYTPAWKFNDWEMKGVPVRLEFGPKDAAKEVVSFARRDTGEKGTIP 427

Query: 431 LEEVINYASHRFSN 444
           + ++          
Sbjct: 428 IADIATKIPELLET 441


>gi|304404287|ref|ZP_07385949.1| prolyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304347265|gb|EFM13097.1| prolyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 482

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 142/415 (34%), Gaps = 69/415 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  +N+   +      TG      P       +  E    + +  E+  +
Sbjct: 39  GCIVFRPEGYELWENIQRDLDRRFKETGHRNAYFPLFIPESFFQKEKEHVEGFNPELPWV 98

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
            +    + ++ +   PT E +   ++   I+SYR+LP    Q     R E R     +R+
Sbjct: 99  TEAAGEKLEERLAVRPTSETMFGHMYAKWIQSYRDLPVLINQWANVVRWEKR-TLPFLRT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T   ++    +M   Y                       D   +F+ 
Sbjct: 158 SEFLWQEGHTAHETETEAREETMRMLHVY----------------------RDFVQDFLA 195

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        ++   +  E++              +     
Sbjct: 196 --------------------------IPVVVGQKTPSEKFAG-----------AVDTYSI 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      R ++ G   Y GT +++     F   + +  +    S+G+ + R++ A+I   
Sbjct: 219 EAMMKDGRAVQAGTSHYLGTNFAVAFDIKFLDRENQLQFTHTTSWGV-STRLIGALIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIG 389
            D +G+  P  VAP +  +I I       V     ++++A+L   G     DD      G
Sbjct: 278 GDDRGLALPPKVAPTQAIMIPIGPPKTRDVVMPRVDELFAQLKAAGVRTRVDDRSDVSPG 337

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +F   ++ G PL++ +G +   + +  +  R++G +  +    ++         
Sbjct: 338 WKFNEYEMRGVPLRIEIGPRDCENGQAVLVSRVSGEKRVVQQANLVEEVERMLEE 392


>gi|110005463|emb|CAK99785.1| prolyl-trna synthetase protein [Spiroplasma citri]
          Length = 474

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 142/412 (34%), Gaps = 70/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  +N+  I+  E  + G   +  P L    L+  E    + +  E+  +
Sbjct: 36  GTTIFKPYGYEIWENIQKILDAEFKKNGVKNVYFPLLIPKTLFNKEKEHIEGFSPEIATV 95

Query: 97  ADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               DK     +   PT E +    F   I+ YR+LP  + Q     R E   R   +R+
Sbjct: 96  TKVGDKVLDEELYIRPTSEVLFGTFFSKEIQGYRDLPLLYNQWVNVLRWEKTTRP-FLRT 154

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   + +                                            
Sbjct: 155 SEFLWQEGHTIHSSKQ-------------------------------------------- 170

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDF-DDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                E Q F  K    +   +E T     I    +  E++                   
Sbjct: 171 -----EAQQFTLKILDIYATFAEKTLLLPVIKGQKTEREKFAG-----------AEETYT 214

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E+     + ++ G   YFG  +S      F        Y    S+G+ + R++  +I +
Sbjct: 215 IESLMYDGQALQCGTSHYFGQNFSKAFDIKFANQKNTLEYAYSTSWGV-STRLIGGIIMT 273

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  G++ P  +AP +I ++ I         A +++  +L K       D   +  G +
Sbjct: 274 HSDDNGLVLPPQIAPIQIMILPINNDSNEQLSAAQQLQKKLQK--YRCEIDQSDKGFGFR 331

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              A++ G PL++ +G + ++  +V I  R T  +  +S  EV    S   +
Sbjct: 332 ATNAEIKGIPLRIEIGPRDLAQQQVTIARRDTFEKITVSWAEVEKVVSDLLA 383


>gi|288801976|ref|ZP_06407417.1| proline--tRNA ligase [Prevotella melaninogenica D18]
 gi|302347070|ref|YP_003815368.1| proline--tRNA ligase [Prevotella melaninogenica ATCC 25845]
 gi|288335411|gb|EFC73845.1| proline--tRNA ligase [Prevotella melaninogenica D18]
 gi|302151118|gb|ADK97379.1| proline--tRNA ligase [Prevotella melaninogenica ATCC 25845]
          Length = 493

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 152/445 (34%), Gaps = 56/445 (12%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E  + A+  S     L+++  +I Q +  G     P G    + + A + +    TG 
Sbjct: 5   LKEMTKRADNYSQWYNDLVIKADLIEQSAVRGCMVIKPYGYAIWEKIQAQLDKMFKETGV 64

Query: 67  IEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
                P L     L  E+     + KE   +                          +  
Sbjct: 65  QNAYFPMLIPKSFLSREAEHVKGFAKECAVVTH-----------------------YRLK 101

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                   Q+    + E                       T +   HS+  + +   +  
Sbjct: 102 ATEDGNAVQVDPNAKLEEELIIRPTS--------ETIIWNTYKNWIHSWRDLPLMCNQWC 153

Query: 186 HRLGLKSI-PMRAESGPIGGDLSHEFIVLADTGETQVFCS-KDFMDFPIPSENTDFDDII 243
           + +  +        +        H      +  E +     + + DF             
Sbjct: 154 NVMRWEMRTRPFLRTSEFLWQEGHTAHATREEAEKEAQTMLRVYADFAEKWLAVPVV--- 210

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                V+  T  +A   D +         E      + ++ G   + G  ++     TF 
Sbjct: 211 ---QGVKSETERFAGALDTYT-------IEAMMQDGKALQSGTSHFLGQNFAKSFDVTFL 260

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I   ++  + 
Sbjct: 261 NKENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPKIAPIQVVIVPIFKGEEQLKA 319

Query: 364 ACEKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +K+     +L  +G  V +DD   ++ G +FA  +L G P+++ +G + + ++ +E+ 
Sbjct: 320 LTDKLQPVIDQLRALGITVKYDDADNKRPGFKFADYELKGVPVRLAMGGRDLENNTIEVM 379

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R T  +E +S + ++    +    
Sbjct: 380 RRDTLEKESVSFDGIVERIKNLLDE 404


>gi|323474896|gb|ADX85502.1| prolyl-tRNA synthetase [Sulfolobus islandicus REY15A]
          Length = 481

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 91/437 (20%), Positives = 154/437 (35%), Gaps = 74/437 (16%)

Query: 27  LRTGMIHQHS----KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-V 81
           LR G  + +     KG+  W+P G K   N+ +IIR   + TG  E+  P L   DL   
Sbjct: 20  LREGEFYDYGRYPVKGMGVWMPYGFKLRQNIISIIRNLLDSTGHEEVLFPLLIPEDLLSR 79

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           ES     + +E+  +     +  D  +   PT E  +T +    +KSY+ LP  +YQI  
Sbjct: 80  ESTHIKGFEEEVFWVTKGGSEDLDVKLALRPTSEVAITTMENLWLKSYKQLPKKYYQIVS 139

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            FR E +           +     +          +Y+                   +  
Sbjct: 140 VFRYETKATRP------MIRLREITTFKEAHTVHETYDDAQRQVEEAIEIYKKIFNNLAI 193

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                  V   +   D    + +T   D I  +  V        
Sbjct: 194 ---------------------PYVLSERPEWDRFAGALHTYAFDTIMPDGKV-------- 224

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                                   +++G + + G  +S  +    +  DG   Y    SY
Sbjct: 225 ------------------------MQIGTVHHLGQNFSRALDFKIQKKDGSLDYPHQTSY 260

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYARLS 373
           GI + R +A+VI    D  G I P SVAP K+ ++ I A ++           +I   L+
Sbjct: 261 GI-SDRAIASVIAIHGDDHGPILPPSVAPIKVVVVPIPAKNEEGTQQVMKYSIEICEMLN 319

Query: 374 KVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           K       D D  +  G +F + ++ G P+++ +G + ++ S V IK R       +  E
Sbjct: 320 KNNITCVTDQDTEKTPGEKFYIWEIKGVPIRLEIGPRELASSTVFIKRRDNLKSYTVKKE 379

Query: 433 EVINYASHRFSNNRPVL 449
           EV+N      +  +  L
Sbjct: 380 EVVNKVKEVLNEIQEDL 396


>gi|227830538|ref|YP_002832318.1| prolyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|229579351|ref|YP_002837749.1| prolyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
 gi|229581889|ref|YP_002840288.1| prolyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
 gi|284998034|ref|YP_003419801.1| prolyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
 gi|259511622|sp|C3MQL0|SYP_SULIL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511624|sp|C3NGV6|SYP_SULIN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511625|sp|C3NET8|SYP_SULIY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|227456986|gb|ACP35673.1| prolyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|228010065|gb|ACP45827.1| prolyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
 gi|228012605|gb|ACP48366.1| prolyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
 gi|284445929|gb|ADB87431.1| prolyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
          Length = 481

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 91/437 (20%), Positives = 154/437 (35%), Gaps = 74/437 (16%)

Query: 27  LRTGMIHQHS----KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV- 81
           LR G  + +     KG+  W+P G K   N+ +IIR   + TG  E+  P L   DL   
Sbjct: 20  LREGEFYDYGRYPVKGMGVWMPYGFKLRQNIISIIRNLLDSTGHEEVLFPLLIPEDLLRR 79

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           ES     + +E+  +     +  D  +   PT E  +T +    +KSY+ LP  +YQI  
Sbjct: 80  ESTHIKGFEEEVFWVTKGGSEDLDVKLALRPTSEVAITTMENLWLKSYKQLPKKYYQIVS 139

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            FR E +           +     +          +Y+                   +  
Sbjct: 140 VFRYETKATRP------MIRLREITTFKEAHTVHETYDDAQRQVEEAIEIYKKIFNNLAI 193

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                  V   +   D    + +T   D I  +  V        
Sbjct: 194 ---------------------PYVLSERPEWDRFAGALHTYAFDTIMPDGKV-------- 224

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                                   +++G + + G  +S  +    +  DG   Y    SY
Sbjct: 225 ------------------------MQIGTVHHLGQNFSRALDFKIQKKDGSLDYPHQTSY 260

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYARLS 373
           GI + R +A+VI    D  G I P SVAP K+ ++ I A ++           +I   L+
Sbjct: 261 GI-SDRAIASVIAIHGDDHGPILPPSVAPIKVVVVPIPAKNEEGTQQVMKYSIEICEMLN 319

Query: 374 KVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           K       D D  +  G +F + ++ G P+++ +G + ++ S V IK R       +  E
Sbjct: 320 KNNITCVTDQDTEKTPGEKFYIWEIKGVPIRLEIGPRELASSTVFIKRRDNLKSYTVKKE 379

Query: 433 EVINYASHRFSNNRPVL 449
           EV+N      +  +  L
Sbjct: 380 EVVNKVKEVLNEIQEDL 396


>gi|295135607|ref|YP_003586283.1| prolyl-tRNA synthetase [Zunongwangia profunda SM-A87]
 gi|294983622|gb|ADF54087.1| prolyl-tRNA synthetase [Zunongwangia profunda SM-A87]
          Length = 492

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 73/436 (16%), Positives = 150/436 (34%), Gaps = 85/436 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG      P      L+  E    + + KE   +
Sbjct: 33  GCMVIKPYGYAIWEKMQAELDRMFKETGHQNAYFPLFVPKSLFEAEEKNAEGFAKECAVV 92

Query: 97  AD-------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                                + ++ ++  PT E V+ + +++ I+SYR+LP    Q   
Sbjct: 93  THYRLKTDEENKGKLIVDPAAKLEEELVVRPTSEAVIWNTYKNWIQSYRDLPILINQWAN 152

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E+R R  + R+ EFL ++ ++   T + +     +M                    
Sbjct: 153 VVRWEMRTRLFL-RTSEFLWQEGHTAHATRQEALAETMQMND------------------ 193

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I  +    F+                              I    +  E++     
Sbjct: 194 ----IYAEFVENFMA--------------------------TPVIKGAKTENERFAG--- 220

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E      + ++ G   + G  ++      F   +G   +V   S+
Sbjct: 221 --------AEETYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFATKEGGLEHVWATSW 272

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSK 374
           G+ + R++ A++ +  D KG++ P  +AP ++ ++ I   ++      D    +   L  
Sbjct: 273 GV-STRLMGALVMTHSDDKGLVLPPKLAPIQVVIVPIYKSEEQLDQISDVANGLVKDLRA 331

Query: 375 VGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V +D+    + G +FA  +L G P+++ +G K +    VE+  R T  +E + ++ 
Sbjct: 332 KGISVKFDNRDTHKPGWKFAQYELQGVPVRLAIGPKDIEKGTVELARRDTLTKEFVEMDG 391

Query: 434 VINYASHRFSNNRPVL 449
           V+          +  L
Sbjct: 392 VVEKVVALMEEIQETL 407


>gi|323477637|gb|ADX82875.1| prolyl-tRNA synthetase [Sulfolobus islandicus HVE10/4]
          Length = 481

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 91/437 (20%), Positives = 154/437 (35%), Gaps = 74/437 (16%)

Query: 27  LRTGMIHQHS----KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-V 81
           LR G  + +     KG+  W+P G K   N+ +IIR   + TG  E+  P L   DL   
Sbjct: 20  LREGEFYDYGRYPVKGMGVWMPYGFKLRQNIISIIRNLLDSTGHEEVLFPLLIPEDLLSR 79

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           ES     + +E+  +     +  D  +   PT E  +T +    +KSY+ LP  +YQI  
Sbjct: 80  ESTHIKGFEEEVFWVTKGGSEDLDVKLALRPTSEVAITTMENLWLKSYKQLPKKYYQIVS 139

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            FR E +           +     +          +Y+                   +  
Sbjct: 140 VFRYETKATRP------MIRLREITTFKEAHTVHETYDDAQRQVEEAIEIYKKIFNNLAI 193

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                  V   +   D    + +T   D I  +  V        
Sbjct: 194 ---------------------PYVLSERPEWDRFAGALHTYAFDTIMPDGKV-------- 224

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                                   +++G + + G  +S  +    +  DG   Y    SY
Sbjct: 225 ------------------------MQIGTVHHLGQNFSRALDFKIQKKDGSLDYPHQTSY 260

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYARLS 373
           GI + R +A+VI    D  G I P SVAP K+ ++ I A ++           +I   L+
Sbjct: 261 GI-SDRAIASVIAIHGDDHGPILPPSVAPIKVVVVPIPAKNEEGTQQVMKYSIEICEMLN 319

Query: 374 KVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           K       D D  +  G +F + ++ G P+++ +G + ++ S V IK R       +  E
Sbjct: 320 KNNITCVTDQDTEKTPGEKFYIWEIKGVPIRLEIGPRELASSTVFIKRRDNLKSYTVKKE 379

Query: 433 EVINYASHRFSNNRPVL 449
           EV+N      +  +  L
Sbjct: 380 EVVNKVKEVLNEIQEDL 396


>gi|218295277|ref|ZP_03496113.1| prolyl-tRNA synthetase [Thermus aquaticus Y51MC23]
 gi|218244480|gb|EED11005.1| prolyl-tRNA synthetase [Thermus aquaticus Y51MC23]
          Length = 477

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 79/420 (18%), Positives = 145/420 (34%), Gaps = 70/420 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +N+   + +    TG      P       L  E+   + +  E+  +
Sbjct: 35  GTIVLRPYGYAIWENIQKTLDQMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVV 94

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E V+  ++   I+SYR+LP    Q     R ELR R  + R+
Sbjct: 95  THAGGEELEEPLAVRPTSETVIGYMWSKWIQSYRDLPQLLNQWGNVVRWELRTRPFL-RT 153

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++                                         
Sbjct: 154 SEFLWQEGHTAHATREEAE----------------------------------------- 172

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+        +K   D+           I  L +  E++      T+            
Sbjct: 173 -AEVRRMLGIYAKLARDYAA------IPVIEGLKTEKEKFAGAVYTTT-----------I 214

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   Y G  ++      F+  D +  YV   S+G+ + R + A++ + 
Sbjct: 215 EAMMRDGKALQSGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGL-SWRFIGAIVMTH 273

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGE-QIG 389
            D KG+I P  +AP ++ ++ I   +  +   +A   +   L   G     DD  +   G
Sbjct: 274 GDDKGLILPPRLAPIQVVIVPIYREENREKVLEAAFALKKDLLARGLRAHLDDRDQYTPG 333

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +F   +L G P +V +G K +   +  +  RL G +E + L  +      R       L
Sbjct: 334 YKFHEWELKGVPYRVELGPKDLEVGQAVLASRLGG-KETLPLAALPEALPERLDAFHQAL 392


>gi|259046393|ref|ZP_05736794.1| proline--tRNA ligase [Granulicatella adiacens ATCC 49175]
 gi|259036938|gb|EEW38193.1| proline--tRNA ligase [Granulicatella adiacens ATCC 49175]
          Length = 482

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 78/453 (17%), Positives = 157/453 (34%), Gaps = 90/453 (19%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM----LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
            SK+++  +Q    D       LM    +R  MI +         P G +  +++     
Sbjct: 12  FSKWYIQTIQ--KAD-------LMDYSPVRGCMIFK---------PDGYEIWEHIQEEFN 53

Query: 59  EEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEV 113
                 G      P L     +  E+   + +  E+  + +    + ++ +   PT E +
Sbjct: 54  RRFKEEGIRNAYFPMLIPESFFTKEADHIEGFAPELPWVTEAAGEKLEERLALRPTSETM 113

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           +   F + I SYR+LP+   Q    FR E +     +R+ EFL ++ ++           
Sbjct: 114 IGTAFSNWINSYRDLPYEINQWANVFRWEKK-TLPFLRTSEFLWQEGHTA---------- 162

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                                  A+             V  +  E  V     +     P
Sbjct: 163 ----------------------HADEEDARRRTMKMLEVYKEVVEG-VLAVPVYEGQKTP 199

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           SE                    +A   D +         E      + ++ G   Y GTK
Sbjct: 200 SER-------------------FAGAVDTY-------SIEAMMKDGKAVQAGTSHYMGTK 233

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           ++      +   + +  Y    S+G+ + R++ ++I +  D KG++ P  VAP ++ LI 
Sbjct: 234 FAEAFDIKYLTKENEHVYAHTTSWGV-STRLIGSLIMTHGDEKGLVLPPKVAPTQVVLIP 292

Query: 354 IK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +     +    +  E++   L   G  V  DD     G +F   +L G P+++  G + +
Sbjct: 293 VGPWKKNPAILEKLEELQKELKAAGLRVKIDDTDNSPGFKFNEWELRGVPMRIECGPRDL 352

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +++V  K R    +  +  + +++        
Sbjct: 353 ENNQVMTKMRDLDEKVAVGFDVLVDTILSELDK 385


>gi|134100182|ref|YP_001105843.1| putative threonyl-tRNA synthetase [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006599|ref|ZP_06564572.1| putative threonyl-tRNA synthetase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912805|emb|CAM02918.1| putative threonyl-tRNA synthetase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 405

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 140/434 (32%), Gaps = 43/434 (9%)

Query: 17  DAEIASHKLMLRTG--MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           D      +L L     +I     G+  WLP G      +   IR+ + R G   +  P L
Sbjct: 3   DHRKLGRELGLFDSDPLI---GAGLPYWLPDGALVRHTLEEYIRDAERRAGYQHVYSPVL 59

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
              +L+  SG +D Y  +M        + ++  P+       I+RS   SYR LP    +
Sbjct: 60  GKRELYEISGHWDHYRDDMFPPMRLGAEQVVLRPSLCPHHALIYRSRSHSYRELPLRMAE 119

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +   +R EL    G +     +  +      T E              R +  LG+++  
Sbjct: 120 LGGMYRSELSGVLGGLTRVRAIHLNDAHIFCTLEQVAEEAAAALELIRRAYDALGIRAAR 179

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            R      GG                   +               D    +   VE   A
Sbjct: 180 YRLSLPGSGGK---------------YVAAPRMWQRAAALLVDVLDRCGVVYESVEGEAA 224

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-Q 313
            Y    DV   ++ DS      +S   ++      F           + G DG  H    
Sbjct: 225 FYGPKIDV---QVADSAGREATLSTVQVDFHQPDRFD--------LHYIGGDGDRHRPVM 273

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    IG++    A +    +  G  +P  +AP ++ ++ +   +         +     
Sbjct: 274 VHRSIIGSVERAVAHLV---ELHGGAFPAWLAPTQLVVLPVSDAEAEQ---ARALVRGCH 327

Query: 374 KVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           + G        + G  +G++   A L   P Q ++G+K  +  +V ++ R     + +  
Sbjct: 328 ERGLRAEVAGPERG-SLGARIRAARL--VPYQAVIGAKEAAAEEVALRLRDGRRLDSLPA 384

Query: 432 EEVINYASHRFSNN 445
            +V+          
Sbjct: 385 ADVLARIGELVGAR 398


>gi|325990107|ref|YP_004249806.1| threonyl-tRNA synthetase [Mycoplasma suis KI3806]
 gi|323575192|emb|CBZ40857.1| Threonyl-tRNA synthetase [Mycoplasma suis]
          Length = 425

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 59/431 (13%), Positives = 123/431 (28%), Gaps = 28/431 (6%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQ 75
           D         L      +   G   W   G K  + +   I + Q    G   +  P L 
Sbjct: 17  DHRAVGKNKGLFY-FSKEIGSGFSFWASEGYKLREIIKRYINDFQRDICGINLVQTPILG 75

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             +++ ++G    Y + +     +  +  I  P        + +  I SY+ LP+   + 
Sbjct: 76  KTEIYQKTGHLPLYDENIFPAMKKEGEEWILRPMTCPHHILLAKEVIMSYKQLPYLMGEN 135

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               R E       ++    +        + PE  +            + ++  ++   +
Sbjct: 136 SCLHRYEYSGGLLGLKRVRAMELIDTHIFVLPEHCEDMIKSSLEWVWTLLNKFRIRIKEI 195

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              +         ++++  D                I S+N     +       E   A 
Sbjct: 196 VLAT----RSSKQKYLISGDEWNQTEEILFSATKEWIKSKNISVSLV-----RKEGEAAF 246

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y    D +     DS  +   +S   ++                +         +   + 
Sbjct: 247 YGPKIDFNAV---DSSNQEFTISTVQLDSQMPKKL-------EFSILDANQNSINPWIIH 296

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
              IG +    A +     GK   W          +  +       R   +++  + S  
Sbjct: 297 LGLIGTLERFIAYLLEDWGGKLPFW-----LLPTQISILTVRIDSSRPELKELIKKFSSY 351

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEV 434
           G     D   E+I  +   A     P Q+I+G K + +   +  +       + +S  + 
Sbjct: 352 GFRAKLDLRDERISKKIVNAVNERIPFQIIIGEKELQNLDLINFRELGKEGEKQLSFSDF 411

Query: 435 INYA-SHRFSN 444
           INY      SN
Sbjct: 412 INYLSQEEISN 422


>gi|238620001|ref|YP_002914827.1| prolyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
 gi|259511621|sp|C4KHU5|SYP_SULIK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|238381071|gb|ACR42159.1| prolyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
          Length = 481

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 91/437 (20%), Positives = 154/437 (35%), Gaps = 74/437 (16%)

Query: 27  LRTGMIHQHS----KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-V 81
           LR G  + +     KG+  W+P G K   N+ +IIR   + TG  E+  P L   DL   
Sbjct: 20  LREGEFYDYGRYPVKGMGVWMPYGFKLRQNIISIIRNLLDSTGHEEVLFPLLIPEDLLSR 79

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           ES     + +E+  +     +  D  +   PT E  +T +    +KSY+ LP  +YQI  
Sbjct: 80  ESTHIKGFEEEVFWVTKGGSEDLDVKLALRPTSEVAITTMENLWLKSYKQLPKKYYQIVS 139

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            FR E +           +     +          +Y+                   +  
Sbjct: 140 VFRYETKATRP------MIRLREITTFKEAHTVHETYDDAQRQVEEAIEIYKKIFNNLTI 193

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                  V   +   D    + +T   D I  +  V        
Sbjct: 194 ---------------------PYVLSERPEWDRFAGALHTYAFDTIMPDGKV-------- 224

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                                   +++G + + G  +S  +    +  DG   Y    SY
Sbjct: 225 ------------------------MQIGTVHHLGQNFSRALDFKIQKKDGSLDYPHQTSY 260

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYARLS 373
           GI + R +A+VI    D  G I P SVAP K+ ++ I A ++           +I   L+
Sbjct: 261 GI-SDRAIASVIAIHGDDHGPILPPSVAPIKVVVVPIPAKNEEGTQQVMKYSIEICEMLN 319

Query: 374 KVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           K       D D  +  G +F + ++ G P+++ +G + ++ S V IK R       +  E
Sbjct: 320 KNNITCVTDQDTEKTPGEKFYIWEIKGVPIRLEIGPRELASSTVFIKRRDNLKSYTVKKE 379

Query: 433 EVINYASHRFSNNRPVL 449
           EV+N      +  +  L
Sbjct: 380 EVVNKVKEVLNEIQEDL 396


>gi|227827828|ref|YP_002829608.1| prolyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|229585098|ref|YP_002843600.1| prolyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
 gi|259511620|sp|C3N6D0|SYP_SULIA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511623|sp|C3MW88|SYP_SULIM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|227459624|gb|ACP38310.1| prolyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|228020148|gb|ACP55555.1| prolyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
          Length = 481

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 91/437 (20%), Positives = 154/437 (35%), Gaps = 74/437 (16%)

Query: 27  LRTGMIHQHS----KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-V 81
           LR G  + +     KG+  W+P G K   N+ +IIR   + TG  E+  P L   DL   
Sbjct: 20  LREGEFYDYGRYPVKGMGVWMPYGFKLRQNIISIIRNLLDSTGHEEVLFPLLIPEDLLSR 79

Query: 82  ESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           ES     + +E+  +     +  D  +   PT E  +T +    +KSY+ LP  +YQI  
Sbjct: 80  ESTHIKGFEEEVFWVTKGGSEDLDVKLALRPTSEVAITTMENLWLKSYKQLPKKYYQIVS 139

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            FR E +           +     +          +Y+                   +  
Sbjct: 140 VFRYETKATRP------MIRLREITTFKEAHTVHETYDDAQRQVEEAIEIYKKIFNNLAI 193

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                  V   +   D    + +T   D I  +  V        
Sbjct: 194 ---------------------PYVLSERPEWDRFAGALHTYAFDTIMPDGKV-------- 224

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                                   +++G + + G  +S  +    +  DG   Y    SY
Sbjct: 225 ------------------------MQIGTVHHLGQNFSRALDFKIQKKDGSLDYPHQTSY 260

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYARLS 373
           GI + R +A+VI    D  G I P SVAP K+ ++ I A ++           +I   L+
Sbjct: 261 GI-SDRAIASVIAIHGDDHGPILPPSVAPIKVVVVPIPAKNEEGTQQVMKYSVEICEMLN 319

Query: 374 KVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           K       D D  +  G +F + ++ G P+++ +G + ++ S V IK R       +  E
Sbjct: 320 KNNITCVTDQDTEKTPGEKFYIWEIKGVPIRLEIGPRELASSTVFIKRRDNLKSYTVKKE 379

Query: 433 EVINYASHRFSNNRPVL 449
           EV+N      +  +  L
Sbjct: 380 EVVNKVKEVLNEIQEDL 396


>gi|156053914|ref|XP_001592883.1| hypothetical protein SS1G_05805 [Sclerotinia sclerotiorum 1980]
 gi|154703585|gb|EDO03324.1| hypothetical protein SS1G_05805 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 536

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 72/440 (16%), Positives = 142/440 (32%), Gaps = 62/440 (14%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
            D      +  L T     +S G   +LP G +    +   +  + +  G  E+  PT+ 
Sbjct: 63  ADHRQLGIEQELFTT--SPYSPGSPLFLPKGARMFKALTEFLSAQYSHFGFEEVITPTIY 120

Query: 76  SADLWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTDIFRSHIK 123
              LW +SG +++Y ++M  +  R             ++     P +      IF S  +
Sbjct: 121 KKSLWEKSGHWENYAEDMYSVIGRGASGETVEGQKGENEEYGLKPMNCPGHCLIFASKQR 180

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR +P  +       R+E+     G+ R R F   D + F   P   K   +K      
Sbjct: 181 SYREMPIRYTDFSPLHRNEISGALSGLTRVRRFHQDDGHIFCR-PSQIKEEISKTLEFVK 239

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             +  LGL                 +  +VL+         +K+  D    +     D+ 
Sbjct: 240 MTYSTLGL---------------GMNYRLVLSTRPSDHYIGTKEEWDNAEKALKQSLDNS 284

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA-- 300
               ++ E   A Y    D+    L DS  +  + +   ++    F    ++ L   A  
Sbjct: 285 GREWTMNEGDGAFYGPKIDII---LKDSDGKEHQTATIQLD----FQLPKRFELEYQAPA 337

Query: 301 -------------TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-GKGIIWPDSVAP 346
                              G    V +    +G++  + A++   ++         S   
Sbjct: 338 PEIEAKGEITHDPILLAKQGPVTPVLIHRAILGSVERMMALLIEHYNGRWPFWLNPSKVT 397

Query: 347 FKIS---LINIKAHDQVCRDACEKIYARL-----SKVGCDVFWDDMGEQIGSQFAVADLL 398
                   + +K    V +      +  L       V   +  DD    +  + + A   
Sbjct: 398 ILTVNDSEVVVKYAKVVKKQLAHHSHHNLFPRSRHAVEIPIELDDSPRSLKKKISEAKRK 457

Query: 399 GFPLQVIVGSKFVSDSKVEI 418
            +   +++G++ V D  V +
Sbjct: 458 RYGAIIVIGNQNVDDKTVTV 477


>gi|163755863|ref|ZP_02162980.1| prolyl-tRNA synthetase [Kordia algicida OT-1]
 gi|161324034|gb|EDP95366.1| prolyl-tRNA synthetase [Kordia algicida OT-1]
          Length = 492

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 156/436 (35%), Gaps = 85/436 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG------------- 84
           G     P G    + + A + +    TG      P      L+                 
Sbjct: 33  GCMVIKPYGYAIWEKMQAQLDKMFKETGHENAYFPLFVPKSLFEAEEKNAEGFAKECAVV 92

Query: 85  -RY------DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
             Y      D  GK M+    + ++ +I  PT E ++ + +++ I+SYR+LP    Q   
Sbjct: 93  THYRLKTDPDKEGKLMVDPNAKLEEELIVRPTSEAIIWNTYKNWIQSYRDLPILINQWAN 152

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E+R R  + R+ EFL ++ ++   T +                             
Sbjct: 153 VVRWEMRTRLFL-RTAEFLWQEGHTAHATKDE---------------------------- 183

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                          +A++ + Q   ++   DF           +    +  E++     
Sbjct: 184 --------------AVAESLQMQKVYAEFAEDFMA------MPVVKGAKTESERFAG--- 220

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                    L     E      + ++ G   + G  ++      +   +GK   V   S+
Sbjct: 221 --------ALDTYTIEALMQDGKALQAGTSHFLGQNFAEAFDVKYATKEGKQELVWATSW 272

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSK 374
           G+ + R++  +I +  D  G++ P  +AP ++  + I  +++      +K   I   L  
Sbjct: 273 GV-STRLMGGLIMTHSDDAGLVLPPKLAPIQVVFVPIYKNEEQFEAIAKKVTEISNELKA 331

Query: 375 VGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  + +D     + G++FA  +L G PL++ +G++ + +  +EI  R T  ++ ++ E+
Sbjct: 332 KGVSIKFDKRDTLRPGAKFAEWELKGVPLRIALGARDLENGTLEIARRDTFEKQSVAQED 391

Query: 434 VINYASHRFSNNRPVL 449
            +          +  L
Sbjct: 392 AVATVVSLLETIQEDL 407


>gi|281201813|gb|EFA76021.1| prolyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 552

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 76/428 (17%), Positives = 145/428 (33%), Gaps = 71/428 (16%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGR 85
           R+ MI  +   G Y   P      + + +    E  + G      P L S   L  E   
Sbjct: 70  RSEMIDYYDISGCYILRPWSYSIWEQIQSFFDGEIKKLGVQNAYFPLLVSEKALNTEEDH 129

Query: 86  YDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +         + +   PT E +M   +++ I+S+R+LP    Q     R 
Sbjct: 130 IEGFAPEVAWVTKSGKSNLSEPIAIRPTSETIMYPAYKNWIRSHRDLPLKLNQWVNVVRW 189

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +RSREFL ++ ++   T E +     ++   Y R++                
Sbjct: 190 EFKRPVPFLRSREFLWQEGHTAFATKEEADKEVLQILRLYKRVY---------------- 233

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATS 260
                                            E      +  L S  E++    Y +T 
Sbjct: 234 --------------------------------EELLAVPVVEGLKSEKEKFAGGLYTSTI 261

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +                  R I+       G  +S      F+  +         S+G+ 
Sbjct: 262 EGFIPTNG-----------RAIQAATSHCLGQNFSKMFGIEFEDENNAKALAWQNSWGL- 309

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGC 377
             R +  +I    D KG++ P  +AP ++ ++ +   D    +     +++  RL + G 
Sbjct: 310 TTRTIGVMIMVHGDDKGLVLPPRIAPIQVVVVPLYFKDFDSAILDKKADEVVQRLKEAGI 369

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               D+        ++   +L G P++V VG K +    V    R  G++E ++  ++I 
Sbjct: 370 RAHLDNRTNYNPRQKYIHWELKGVPIRVEVGPKDLEKDVVMFCRRDNGVKESVANADLIT 429

Query: 437 YASHRFSN 444
            A     N
Sbjct: 430 TAKSTLDN 437


>gi|296820624|ref|XP_002849971.1| threonyl-tRNA synthetase [Arthroderma otae CBS 113480]
 gi|238837525|gb|EEQ27187.1| threonyl-tRNA synthetase [Arthroderma otae CBS 113480]
          Length = 520

 Score =  156 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 74/433 (17%), Positives = 137/433 (31%), Gaps = 57/433 (13%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
            D         L T  I  +S G   + P G   L+ + + +R +  + G  E+  P + 
Sbjct: 56  ADHRALGTAQELFTNSI--YSPGSPLFRPNGTHILNKLISFLRAQYRQYGFREVLTPNIY 113

Query: 76  SADLWVESGRYDSYGKEML-------RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
              LW  SG + +Y  +M              D+     P +      +F+S   SYR L
Sbjct: 114 KQSLWEVSGHWQNYKDDMYEVGGRGNTAEATEDETYGLKPMNCPGHCLLFKSQKHSYREL 173

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           P  +       R+E+     G+ R R F   D + F    +               +   
Sbjct: 174 PVRYADFSPLHRNEVSGSLSGLTRVRRFHQDDGHIFCRPGQIGGE-IQLALKFADTVLQT 232

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            GL                    +VL+   E       +  +          DD      
Sbjct: 233 FGLADGYR---------------LVLSTRPEKDFIGCLEQWENAEQQLRQALDDSGLSWE 277

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATFKGA 305
           + E   A Y    D+   ++ DS  +  ++S   +++     F                 
Sbjct: 278 LNEGDGAFYGPKIDL---QIQDSQGKYHQLSTIQLDMNLPQRFELEYLVPEGSEEYDPAT 334

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G+   V +     G++    A++    +     WP  ++P +  L+ +    +    A 
Sbjct: 335 GGRATPVLIHRAIFGSLERFFALLI---ERYSGQWPFWLSPRQAILLTVGKGLE---QAA 388

Query: 366 EKIYARL-----------SKVG---------CDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           E + A++           SK G          +V  D     +  +   A    + L  I
Sbjct: 389 EDVVAKISGFEPITASRPSKSGLPLSPLQPTFNVDLDLASRSLPKKIHDAHTARYNLVFI 448

Query: 406 VGSKFVSDSKVEI 418
           +G K +++  V+I
Sbjct: 449 MGPKNLANGSVDI 461


>gi|254565877|ref|XP_002490049.1| Protein of unknown function that may interact with ribosomes, based
           on co-purification experiments [Pichia pastoris GS115]
 gi|238029845|emb|CAY67768.1| Protein of unknown function that may interact with ribosomes, based
           on co-purification experiments [Pichia pastoris GS115]
 gi|328350453|emb|CCA36853.1| prolyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 677

 Score =  156 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 69/438 (15%), Positives = 134/438 (30%), Gaps = 74/438 (16%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ +  M+  +   G Y   P      + +     ++  R G      P   S+  L 
Sbjct: 189 QQILTKGEMMDYYDVSGCYILRPASYAIWERIQEYFDKKIKRLGVQNAYFPMFVSSKVLE 248

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 249 KEKDHIEGFAPEVAWVTRAGSSELEEPIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 308

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R                                             
Sbjct: 309 SVVRWEFKHPQPFLR--------------------------------------------- 323

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +        H   +  +    +V          I  E      +    +  E++    
Sbjct: 324 --TREFLWQEGHTAHLTFEEANKEVL-QILDYYVGIYEELLAVPVVKGKKTENEKFAGGL 380

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             T+                 + RGI+       G  +S   + + +  DG D       
Sbjct: 381 FTTT----------CEGYIPTTGRGIQGATSHCLGQNFSKMFNISVENPDGADKPKLFAW 430

Query: 317 YGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-------KAHDQVCRDACEK 367
                 + RV+  ++    D KG++ P  V+ +++ +I +       K  +Q     C K
Sbjct: 431 QNSWGLSTRVIGVMVMVHSDNKGLVIPPRVSQYQVIVIPVGITSKTTKEEEQKILATCNK 490

Query: 368 IYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           I  +L +    V  D       G +F+ A+L G PL++ VG + +  + V    R    +
Sbjct: 491 IEGKLRQNDLRVTSDYRTNYSPGWKFSNAELKGIPLRIEVGPRDLQKNTVVAVRRDDFTK 550

Query: 427 EDMSLEEVINYASHRFSN 444
             +SL+      S     
Sbjct: 551 TTISLDTFEKEISDLLET 568


>gi|238922935|ref|YP_002936448.1| prolyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
 gi|259511596|sp|C4ZC24|SYP_EUBR3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|238874607|gb|ACR74314.1| prolyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
 gi|291523823|emb|CBK89410.1| prolyl-tRNA synthetase, family I [Eubacterium rectale DSM 17629]
 gi|291528709|emb|CBK94295.1| prolyl-tRNA synthetase, family I [Eubacterium rectale M104/1]
          Length = 479

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 143/412 (34%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMIFKPNGYAIWENIQKNLDAMFKETGVENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +   + +   PT E +  ++F   ++S+R+LP  + Q     R E   R   +RS
Sbjct: 99  TQGGLETLQERLAVRPTSETLFCELFSKTVQSHRDLPKVYNQWCSVVRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M   Y                               
Sbjct: 158 SEFLWQEGHTVHATAEEAEARTVQMLNIY------------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD  E  +                    +    +  E++    A  +            
Sbjct: 187 -ADFCEKYLAIPM----------------VKGRKTDKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG  +       +   D K  Y    S+G+ + R++ A+I   
Sbjct: 219 EALMHDGKALQSGTSHNFGDGFPKAFGIQYTDKDNKLQYCHETSWGV-STRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ +I I+       D    +  +LSK    V  D   +  G +F
Sbjct: 278 GDDSGLVLPPKIAPTQVMVIPIQQQKDGVLDKAYDLKDKLSK-DFRVKIDATDKTPGWKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  ++ G   ++ +G K +  ++  I  R T  +  +SL+EV    +     
Sbjct: 337 AAQEVQGISTRIEIGPKDIEKNQCVIVRRDTREKIVVSLDEVNEKLAEVLET 388


>gi|284054770|ref|ZP_06384980.1| threonyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 525

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 115/337 (34%), Gaps = 32/337 (9%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           Y+    +   RD      +L L +  I +    G+  W P G +    +    R+   + 
Sbjct: 213 YWQQKEEAKKRDHRKLGQELDLFS--IQEDAGGGLVFWHPKGSRMRLLIEDYWRQAHLQG 270

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G   +  P + +  LW  SG YD Y + M    +  +++    P +       ++SH+ S
Sbjct: 271 GYELLYTPHIANLALWKTSGHYDFYRENMFDQIEIENQSYQLKPMNCPFHVLTYQSHLHS 330

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR LP  + ++   +R E      G+MR R F   DA+ F L  + +      +     +
Sbjct: 331 YRELPIRWAELGTVYRYERSGVLHGLMRVRGFTQDDAHIFCLPEQVADE-ILGVLNLTEK 389

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I    G     +   + P                      +         +  +  +   
Sbjct: 390 ILSDFGFSKYEVNLSTRPSKS-----------------VGNDGVWQLATDALISALNIKG 432

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + E   A Y    D+   K+ D++    + S   ++    F    ++++   A   
Sbjct: 433 WDYVVDEGGGAFYGPKIDI---KIQDAIARLWQCSTIQVD----FNLPERFNMEYVAA-- 483

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
               +   + +     G++     ++  ++ G   +W
Sbjct: 484 -DGSRQRPIMIHRAIFGSLERFFGILIENYAGDFPLW 519


>gi|332292776|ref|YP_004431385.1| prolyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170862|gb|AEE20117.1| prolyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 492

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 152/436 (34%), Gaps = 85/436 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG      P      L+  E    + + KE   +
Sbjct: 33  GCMVIKPYGYAIWEKMQAELDRMFKETGHENAYFPLFVPKSLFEAEEKNAEGFAKECAVV 92

Query: 97  AD-------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                                + ++ +I  PT E ++ + ++  I+SYR+LP    Q   
Sbjct: 93  THYRLKTDPDNPSKLIVDPNAKLEEELIVRPTSEAIIWNTYKGWIQSYRDLPLLINQWAN 152

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E+R R  + R+ EFL ++ ++   T +                             
Sbjct: 153 VVRWEMRTRLFL-RTAEFLWQEGHTAHATKQ----------------------------- 182

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                      E +V A+        +  + +F           +  + +  E++     
Sbjct: 183 -----------EALVEAE------LMNNIYAEFAENFLAIPV--VKGVKTESERFAG--- 220

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E      + ++ G   + G  ++      F    GK  +V   S+
Sbjct: 221 --------ADETFCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFTTNQGKQEHVWATSW 272

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSK 374
           G+ + R++ A+I +  D +G++ P ++APF++ ++ I    +          +I   L  
Sbjct: 273 GV-STRLMGALIMTHSDDQGLVLPPNLAPFQVVIVPIYKGQEQLDAISQVANEIVQDLKL 331

Query: 375 VGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V +D+    + G +F   +L G PL++ +G K +    VE+  R T  +E ++ E 
Sbjct: 332 HGVSVKFDNRDTHKPGWKFNEYELKGVPLRIGIGPKDLEKRTVELARRDTLTKEFVAKEN 391

Query: 434 VINYASHRFSNNRPVL 449
           ++          +  L
Sbjct: 392 IVETVVDLLKEIQENL 407


>gi|295397522|ref|ZP_06807604.1| proline--tRNA ligase [Aerococcus viridans ATCC 11563]
 gi|294974252|gb|EFG49997.1| proline--tRNA ligase [Aerococcus viridans ATCC 11563]
          Length = 502

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 83/420 (19%), Positives = 151/420 (35%), Gaps = 69/420 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G    ++      E   + G      P L     +  E+   + +  E+  +
Sbjct: 52  GTMIFKPDGFLLWESYKDAFNEMLKKEGIRNAYFPMLIPKHFFEKEADHVEGFAPELPWV 111

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
            +    + ++ +   PT E +  +     I SYR+LP    Q    FR E R     +R+
Sbjct: 112 TEAGEEKLEEPLALRPTSETLFGNAMSDWINSYRDLPMELNQWANVFRWEKR-TLPFIRT 170

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++     E ++    KM   Y ++                            
Sbjct: 171 SEFLWQEGHTAHANEEEARERTMKMLHYYTQLVK-------------------------- 204

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                  +VF    +     PSE                      A              
Sbjct: 205 -------EVFAMPVYEGQKTPSER------------------FAGAVDTF--------SI 231

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + I+ G   Y G  ++      F   D +  YV   S+G  + R++ A+I   
Sbjct: 232 EAMTKDTKAIQAGTSHYLGQNFAEAFDIKFLNEDNQHTYVHTTSWGS-STRLIGAMIMIH 290

Query: 333 HDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            D +G++ P  VA  ++SLI +     +    +  ++I A LS  G  V  DD     G 
Sbjct: 291 GDEQGLVLPPRVAGTQVSLIPVGNIKKNPQVLEKLQEIKATLSAAGLRVNLDDSNNSPGY 350

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE-EVINYASHRFSNNRPVL 449
           +F  +++ G PL++  G + + +++V IK R    +E  SL+ +++   + RF +    L
Sbjct: 351 KFNESEVHGVPLRIEFGPRDMENNQVMIKMRDVDGKEAFSLDGDLLAEINTRFDDMHQRL 410


>gi|219851588|ref|YP_002466020.1| prolyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
 gi|219545847|gb|ACL16297.1| prolyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
          Length = 479

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/435 (17%), Positives = 146/435 (33%), Gaps = 73/435 (16%)

Query: 25  LMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWV 81
           L+ R  +  +    KG+Y W P G        AI+R+  ++    E   P L    +   
Sbjct: 23  LLWRAEIMDVRYPVKGVYVWFPFGFSIRKLTYAILRQLLDK-DHQETLFPLLIPEQEFMK 81

Query: 82  ESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E+     + +E+  +        D  +   PT E  +  ++   ++S+ +LP   YQI  
Sbjct: 82  EAEHIKGFEEEVYWVTHGGLTELDVKLALRPTSETAIYPMYALWVRSHADLPLKLYQIVN 141

Query: 138 KFRDELRPRFGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            FR E +    ++R RE    K+A++   T + +          Y   +  L        
Sbjct: 142 TFRYETKHTRPLIRLREITSFKEAHTVHATWDEAAAQVEDALALYTTFYQHLC------- 194

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                                                        +  L S   +W    
Sbjct: 195 ---------------------------------------------VPILISRRPEWDKFP 209

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            A   +  + +    P+ K      +++G + + G  +S     T++  +G+        
Sbjct: 210 GADYTMAVDTVM---PDGK-----TLQIGTVHHLGDHFSRTFDITYENQNGEQQLAYQTC 261

Query: 317 YGIGAMRVVAAVIESSHDGK--GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           YGI + R +AA+I    D K   +    +     +  I +         A   I  +L  
Sbjct: 262 YGI-SERCIAALISMHGDDKGLILPPEVAPVQVVVVPIIVGKRRDEVLAAARTIRDQLEA 320

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V  D+   + G+++   ++ G PL+V +G + + +  V    R +  +  +    +
Sbjct: 321 AGLRVKLDEREIRPGAKYYHWEMRGVPLRVELGPRDLDNGVVTAVTR-SKEKSTIPAASL 379

Query: 435 INYASHRFSNNRPVL 449
           I          R  L
Sbjct: 380 IEGVQALLEQVRNTL 394


>gi|13541912|ref|NP_111600.1| prolyl-tRNA synthetase [Thermoplasma volcanium GSS1]
 gi|74581167|sp|Q979Q5|SYP_THEVO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|14325343|dbj|BAB60247.1| tRNA synthetase Pro [Thermoplasma volcanium GSS1]
          Length = 462

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/421 (18%), Positives = 158/421 (37%), Gaps = 76/421 (18%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G+  W P G K +  ++ IIR   ++    E++ P L S  +   E      +  E+  +
Sbjct: 30  GMNVWRPYGWKIMKLIDNIIRNAVDKHSFDEVNFPVLISRGMLEVEFEHIRGFENEIYWV 89

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                ++ ++ +   PT E  M  +F   ++S+ +LP   YQI   +R E +     +R 
Sbjct: 90  TKGGKEKLEEELALRPTSESAMYPMFSLWVRSHADLPLKIYQIVSVYRYETKHTRSFIRI 149

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           RE    +A++                                   ES         E+ +
Sbjct: 150 REIHFFEAHTAH---------------------------------ESYEDAEKQMDEYRI 176

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +                    +E  D   +  L     +W     A   +  + +  S  
Sbjct: 177 IW-------------------TEIADALCLPFLYDQRPEWDKFPGAMYTIAFDTVMPS-- 215

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  R +++G I  +GT +S      +   DG   YV   ++G+ + R++AA+I   
Sbjct: 216 ------GRSLQIGTIHQYGTNFSKNYDIKYLKEDGTFEYVHQTTFGM-SERLLAAIIGIH 268

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQ 391
            D KG+I P ++AP ++ ++ I    +      + I   L+ +G     D+      G +
Sbjct: 269 GDDKGLILPPAIAPIQVVIVPIPG--EGVERYAKDIETTLNGIGIRCHVDNRDNYTPGYK 326

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI-------NYASHRFSN 444
           +   ++ G PL++ VG + + +  V +  R    ++ +  E+++       +    + + 
Sbjct: 327 YNDWEMRGVPLRIEVGERELKEKTVTLAARNIRGKKTVQREKLVYEVPDMLDLVKEKITE 386

Query: 445 N 445
           +
Sbjct: 387 D 387


>gi|297619256|ref|YP_003707361.1| prolyl-tRNA synthetase [Methanococcus voltae A3]
 gi|297378233|gb|ADI36388.1| prolyl-tRNA synthetase [Methanococcus voltae A3]
          Length = 481

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 91/451 (20%), Positives = 162/451 (35%), Gaps = 84/451 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++  IL+              LR  +     KG   +LP G K       I+R+  +
Sbjct: 25  FSEWYNEILETAK--------IYDLRYPI-----KGCGVYLPYGFKIRRYSFEILRDLLD 71

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDI 117
            T   E   P L    L   E      +  E+  +       +       PT E  +  +
Sbjct: 72  STKHDETLFPMLIPETLLAKEGEHIKGFEDEVFWVTHGGKNELDVRLALRPTSETAIYYM 131

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE-FLMKDAYSFDLTPEGSKHSYNK 176
            +  +K + +LPF  YQ    FR E +    ++R RE     +A++   T E  +    +
Sbjct: 132 MKQWLKVHTDLPFKIYQTVNTFRYETKHTRPLIRLREIMTFNEAHTAHSTKEECEAQVKE 191

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
               Y   F           A S P+      E                   D    +E 
Sbjct: 192 GMYVYSSFF----------EALSIPVLISKRPE------------------WDKFPGAEY 223

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           T   D I  +                                 + +++G +   G  ++ 
Sbjct: 224 TTAYDTIYPDG--------------------------------KTMQIGTVHNLGQHFAT 251

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-- 354
                F+ ADG+  Y     YGI + RV+A++I    D  G++ P  VAP +I++I +  
Sbjct: 252 TFDLEFETADGEKDYAYQTCYGI-SDRVIASIIAIHGDKNGLLIPPKVAPVQIAMIPLLF 310

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           K  ++   +   +IY +L K    +  D    + G +F   +L G PL++ +G + + + 
Sbjct: 311 KGKEEKVLEKANEIYDKLKKF-VRIELDTRDIRPGRKFNDWELKGVPLRIELGPRDLENG 369

Query: 415 KVEIKHRLTGIREDMSLEEV-INYASHRFSN 444
           KV I  R    + D+++E++   Y +     
Sbjct: 370 KVMIFRRDKNEKFDIAIEDLTAEYLAELMET 400


>gi|326437267|gb|EGD82837.1| threonyl-tRNA synthetase 1 [Salpingoeca sp. ATCC 50818]
          Length = 604

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 139/455 (30%), Gaps = 57/455 (12%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +    +       L +   M H  S G   +LP G + L  +  +IR +    G  E+ 
Sbjct: 157 EEREKYNHSAVGKSLSIF--MQHDTSPGAPFFLPHGVRLLHRLTDLIRRQFRIRGYEEVM 214

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA---------------MIYGPTHEEVMT 115
            P + S  LW  SG +D Y  +M R+   ++K+                   P +     
Sbjct: 215 TPLVFSQKLWETSGHWDHYRDDMYRVMGFDEKSSGNGGNDDDDDDEYLRGLKPMNCPAHC 274

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSY 174
            IF+   +S+ +LP    +     R+E      G+ R R+F   DA+ F    +  +   
Sbjct: 275 LIFKHTKRSHHDLPLRLGEFSALHRNEASGALAGLTRVRQFHQDDAHIFCTEEQIQQE-V 333

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                    ++   G                   EF     T            D     
Sbjct: 334 AGCLDFVRTVYDACGFTYSLT-------FSTRPDEFTGDIST-----------WDRAEAQ 375

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                D       I E   A Y    DV+ E   D +    + +   ++    F    ++
Sbjct: 376 LRACLDAAHIDFDINEGDGAFYGPKIDVYLE---DRMGRRHQSATIQLD----FQLPQRF 428

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
            L  +     A  +   V +    +G++  + AV+     G   +W        +S+ + 
Sbjct: 429 DLNFT---DAAMMQQRPVIIHRAILGSLERMTAVLLEHTRGHLPLWCSPRQVAVLSVSSA 485

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                         + +L   G           I  +   A+ L F   ++VG +     
Sbjct: 486 SRAAAAAV------HRQLVSDGLHAETFLEDTTIARKVRAAEQLKFNAIIVVGDEEAKTG 539

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           K  ++ R    +    L   +        ++R  L
Sbjct: 540 KFSVRWRD-HDKRLAPLSPALQRI---LRDDRECL 570


>gi|125775071|ref|XP_001358787.1| GA18849 [Drosophila pseudoobscura pseudoobscura]
 gi|54638528|gb|EAL27930.1| GA18849 [Drosophila pseudoobscura pseudoobscura]
          Length = 1725

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 128/422 (30%), Gaps = 73/422 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y            +      E  R G  E   P   S   L  E      +  E+  
Sbjct: 1256 SGCYILRHWSFAIWKFIKQWFDAEITRLGVKECYFPIFVSKAVLEKEKTHIADFAPEVAW 1315

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    D  +       PT E VM   +   I+SYR+LP    Q     R E +     +R
Sbjct: 1316 VTKSGDSDLAEPIAVRPTSETVMYPAYAKWIQSYRDLPLRLNQWNNVVRWEFKHPQPFLR 1375

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ ++   +    + +  ++                                  
Sbjct: 1376 TREFLWQEGHTAFASQ---EEAVKEVLDMLDL---------------------------- 1404

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     +  +       +    T+ +               Y  T +          
Sbjct: 1405 -------YALVYTHLLAIPVVKGRKTEKEKFA---------GGDYTTTVEAFISA----- 1443

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                  S R I+     + G  +S      ++  + +       +      R +  +I  
Sbjct: 1444 ------SGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVFQNSWGITTRTIGVMIMV 1497

Query: 332  SHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYARLSKVGCDVFWDDM 384
              D +G++ P +VA  +  ++     +   D+      DAC+K+   L   G     D  
Sbjct: 1498 HADNQGLVLPPNVACIQAIVVPCGITVNTTDEERAQLLDACKKLEQTLVGAGVRCEGDYR 1557

Query: 385  GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRF 442
                 G +F   +L G PL++ VG K +   + V ++ R TG +  + L +V    S   
Sbjct: 1558 DNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVR-RDTGEKITLPLADVEKKISALL 1616

Query: 443  SN 444
              
Sbjct: 1617 ET 1618


>gi|303388510|ref|XP_003072489.1| prolyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506]
 gi|303301629|gb|ADM11129.1| prolyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506]
          Length = 508

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 138/421 (32%), Gaps = 73/421 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G Y   P GQ     +     E+    G  E   P L     L  E    +++  E+  +
Sbjct: 45  GCYVMRPQGQFVWKCIQKWFTEKIEELGVQECYFPMLVPKSTLEKEKNHVENFSPEVAWI 104

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               ++ +       PT E ++   F   I+S+R+LP    Q     R EL      +R 
Sbjct: 105 TKCGNEVLGDPVAVRPTSETIIYPSFSKWIRSHRDLPLKINQWCSVLRWELHGTLPFIRG 164

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           +EFL ++ ++  LT E S      +   Y RI+                           
Sbjct: 165 KEFLWQEGHTAFLTKEESDVEVFAILDLYSRIY--------------------------- 197

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                SE      I    S  E++     A      E       
Sbjct: 198 ---------------------SELLAVPVIKGRKSESEKFG---GADYTTSIEAFIPGSG 233

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIES 331
                  RGI+ G     G  +S          +G ++   +     G   R +   I  
Sbjct: 234 -------RGIQAGTSHSLGQNFSKMFDIKVDTEEGSENSSFVYQNSWGLTTRSIGIAIMI 286

Query: 332 SHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             D  G++ P  VA  ++ +I             +  R    KI+A+L      V  DD 
Sbjct: 287 HSDNLGLVLPPRVAMIQVVVIPCGITASSSEEDVESLRTYISKIHAQLKNF-VRVHVDDR 345

Query: 385 GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               +G +F   ++ G PL++ VG K +++S+  +  R T  ++ +S+E++         
Sbjct: 346 NNVTVGFKFNHWEIRGVPLRLEVGFKDMANSEACLVRRDTRAKKQVSVEDIGQTVMEEID 405

Query: 444 N 444
            
Sbjct: 406 T 406


>gi|326915112|ref|XP_003203865.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Meleagris
            gallopavo]
          Length = 1778

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/451 (16%), Positives = 131/451 (29%), Gaps = 79/451 (17%)

Query: 13   ENPRD---AEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            E  ++   AE  S +++ +  MI  +   G Y   P      + +      E  + G   
Sbjct: 1283 EAKKEENLAEWFS-QVITKAEMIEYYDVSGCYVLRPWAHAIWEAIKNFFDAEIKKLGVEN 1341

Query: 69   MSVPTLQS-ADLWVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIK 123
               P   S A L  E      +  E+  +       +       PT E VM   +   ++
Sbjct: 1342 CYFPMFVSQAALEKEKSHIADFAPEVAWVTKSGKTELAEPIAIRPTSETVMYPAYAKWVQ 1401

Query: 124  SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
            S+R+LP    Q     R E +     +R+REFL ++ ++   T       Y +     ++
Sbjct: 1402 SHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFAT-------YEEAAEEVMQ 1454

Query: 184  IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            I          + A     G     E                                  
Sbjct: 1455 ILDLYAQVYEDLLAIPVVKGRKTEKEKFA------------------------------- 1483

Query: 244  SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                        Y  T +                S R I+     + G  +S     TF+
Sbjct: 1484 ---------GGDYTTTVEAFISA-----------SGRAIQGATSHHLGQNFSKMFEVTFE 1523

Query: 304  GADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---- 358
                            G   R +  +     D  G++ P  VA  ++ +I     +    
Sbjct: 1524 DPKKPGEKQYAYQNSWGITTRTIGVMTMIHGDNMGLVLPPRVACVQVVIIPCGITNTLSE 1583

Query: 359  ---QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +     C +   RL      V  D       G +F   +L G P+++ VG + +   
Sbjct: 1584 EDREALLKKCNEYLKRLLNANVRVRADLRDNYSPGWKFNHWELKGVPVRLEVGPRDMKSQ 1643

Query: 415  K-VEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + V ++ R TG +   S  E           
Sbjct: 1644 QFVAVR-RDTGQKLTFSEHEAEEKLKQILEE 1673


>gi|297817558|ref|XP_002876662.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322500|gb|EFH52921.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 522

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/420 (15%), Positives = 135/420 (32%), Gaps = 68/420 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ-SADLWVESGRYDSYGKEMLR 95
            G Y   P      + +      E  +        P     A L  E    + +  E+  
Sbjct: 69  SGCYILRPWSMAIWEIMQIFFDAEIKKMKVKNCYFPLFVSPAVLEKEKDHIEGFAPEVAW 128

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   +   I+ +R+LP    Q     R E       +R
Sbjct: 129 VTKSGKSDLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIR 188

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T   +     ++   Y                        +  E++
Sbjct: 189 SREFLWQEGHTAFATKAEADEEVLQILELY----------------------RRIYEEYL 226

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                         +  + S  E++      TS      +   +
Sbjct: 227 A--------------------------VPVVKGMKSENEKFAGGLYTTS------VEAFI 254

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     + RG++       G  ++      ++    +   V   S+   + R +  +I +
Sbjct: 255 PN----TGRGVQGATSHCLGQNFAKMFEINYENEKAETAMVWQNSWAY-STRTIGVMIMT 309

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGE-Q 387
             D KG++ P  VA  ++ +I +   D   Q   DAC    + L + G     D      
Sbjct: 310 HGDDKGLVLPPKVASVQVVVIPVPYKDANTQGIYDACTATASALCEAGIRAEEDLRDNYS 369

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            G +++  ++ G PL++ +G + + + +V    R  G++ED+    ++          + 
Sbjct: 370 PGWKYSDWEMKGVPLRIEIGPRDLENDQVRTVRRDNGVKEDIPRGSLVENVKELLEKIQQ 429


>gi|258569006|ref|XP_002585247.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237906693|gb|EEP81094.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 598

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 96/295 (32%), Positives = 145/295 (49%), Gaps = 11/295 (3%)

Query: 2   RRSKYFLPI----LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAII 57
           R S +++P      +   +D     ++L++R G I Q   GI+  LPLG +    +  +I
Sbjct: 12  RLSTFWVPTGGVAEKSKKKD----GNELLVRAGFIRQAYSGIFHLLPLGLRVQQKLENLI 67

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
            +     GA ++S+ +L S +LW  SGR  +   E+ R  DR   + +  PTHEE +T +
Sbjct: 68  DKHMQSIGASKLSLSSLSSQELWKRSGRL-NDDSEIFRFNDRKGASFLLAPTHEEEITAL 126

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
             S +KSYR+LP   YQI  K+RDE RPR G++R REFLMKD Y+FD + E    +YN +
Sbjct: 127 VGSLVKSYRDLPLRVYQITRKYRDEPRPRQGLLRGREFLMKDLYTFDYSAEKGLDTYNTV 186

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y RIF  L L  +   A+SG +GGDLSHEF      GE  V    +        E  
Sbjct: 187 KEVYTRIFDDLRLPYLVAAADSGNMGGDLSHEFHFENPNGEDTVITCTNCS-HAFNEEIA 245

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEK-LFDSLPENKRVSARGIEVGHIFYFG 291
           D       N    + + P+  +         + ++  +K +  R     ++F  G
Sbjct: 246 DGRGPKVENRQEPEHSEPFGPSPPPAISTGEWVTISRDKSMLVRAYYPKYLFDEG 300



 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 21/194 (10%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-------------KGADGKDHYVQM 314
                E        IE+GH F+ GT+YS  + A               +GA      ++M
Sbjct: 408 CSRCGEGVLHPHTTIELGHTFHLGTRYSSALQANVAVDPTKLIGGKGPEGASSVLVPLEM 467

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G +GIG  R+++AV     D KG+ WP  +APF   +   K  +Q      E++Y  L  
Sbjct: 468 GCHGIGVSRMISAVATMLADHKGLKWPQVIAPFSAVICFGKGFEQD----AEQVYDALVS 523

Query: 375 ---VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDMS 430
                 D   DD       +   ADL+GFP+ +++G ++ S   VE++ R     ++D+ 
Sbjct: 524 GQMSPIDAVLDDRSHTFPWKLKDADLIGFPVILVLGKQWRSSKLVEVQCRQLDNFKDDVP 583

Query: 431 LEEVINYASHRFSN 444
           L E+ +  S   + 
Sbjct: 584 LNELPSVVSSLLAK 597


>gi|86132750|ref|ZP_01051342.1| Prolyl-tRNA synthetase [Dokdonia donghaensis MED134]
 gi|85816704|gb|EAQ37890.1| Prolyl-tRNA synthetase [Dokdonia donghaensis MED134]
          Length = 492

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 152/436 (34%), Gaps = 85/436 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG      P      L+  E    + + KE   +
Sbjct: 33  GCMVIKPYGYAIWEKMQAELDRMFKETGHENAYFPLFVPKSLFEAEEKNAEGFAKECAVV 92

Query: 97  AD-------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                                + ++ +I  PT E ++ + ++  I+SYR+LP    Q   
Sbjct: 93  THYRLKTDPEDSSKLIVDPNAKLEEELIVRPTSEAIIWNTYKGWIQSYRDLPLLINQWAN 152

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E+R R  + R+ EFL ++ ++   T E +      M   Y                
Sbjct: 153 VVRWEMRTRLFL-RTAEFLWQEGHTAHATKEEALEEAELMNNVY---------------- 195

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                           A+  E  +                    I  + +  E++     
Sbjct: 196 ----------------AEFAENFLA----------------VPVIKGVKTESERFAG--- 220

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E      + ++ G   + G  ++      F    GK  +V   S+
Sbjct: 221 --------ADETYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFTSNQGKQEHVWATSW 272

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSK 374
           G+ + R++ A+I +  D +G++ P ++APF++ ++ I  + +          ++   L  
Sbjct: 273 GV-STRLMGALIMTHSDDQGLVLPPNLAPFQVVIVPIYKNQEQLDAISQVANELVQDLKL 331

Query: 375 VGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V +D+    + G +F   +L G PL++ +G K +    VE+  R T  +E ++ E 
Sbjct: 332 HGVSVKFDNRDTHKPGWKFNEYELKGVPLRIGIGPKDLEKRTVELARRDTLTKEFVAKET 391

Query: 434 VINYASHRFSNNRPVL 449
           V++         +  L
Sbjct: 392 VVDTVITLLKEIQENL 407


>gi|153839390|ref|ZP_01992057.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|149747085|gb|EDM58073.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
          Length = 287

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 97/317 (30%), Gaps = 37/317 (11%)

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             +     R+E      G+MR R F   DA+ F  T    +             +   G 
Sbjct: 1   MAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQEEVTSCIKMVYDTYQTFGF 59

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            +I ++  + P     S E                   D    +     + +     I E
Sbjct: 60  DNIVVKLSTRPEKRVGSDE-----------------IWDQSEEALKQSLESMEIPYEIQE 102

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD- 309
              A Y    +     L+D L    +     ++       G        AT+ G + +  
Sbjct: 103 GEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPGRLG--------ATYVGENNERL 151

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V +    +G++     ++   + G    W        +++              ++I 
Sbjct: 152 VPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVLMNIT------DKQSGYVQEIV 205

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L K G     D   E+IG +     L   P  ++VG + +   ++ ++ R        
Sbjct: 206 QKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGKDLGKF 265

Query: 430 SLEEVINYASHRFSNNR 446
            +++ I Y     S+ +
Sbjct: 266 KVDDFIAYIQDEISSRK 282


>gi|119613716|gb|EAW93310.1| glutamyl-prolyl-tRNA synthetase, isoform CRA_b [Homo sapiens]
          Length = 1522

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 122/424 (28%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y   P      + +      E  + G      P   S   L  E      +  E+  
Sbjct: 1054 SGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAW 1113

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1114 VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR 1173

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 1174 TREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYE------------------------- 1208

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 1209 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISA---- 1241

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+ G   + G  +S      F+                G   R +  + 
Sbjct: 1242 -------SGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMT 1294

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I             +     C     RL  V   V  D
Sbjct: 1295 MVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRAD 1354

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +     V ++ R TG +  ++  E       
Sbjct: 1355 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVAENEAETKLQA 1413

Query: 441  RFSN 444
               +
Sbjct: 1414 ILED 1417


>gi|62241042|ref|NP_004437.2| bifunctional aminoacyl-tRNA synthetase [Homo sapiens]
 gi|288558855|sp|P07814|SYEP_HUMAN RecName: Full=Bifunctional aminoacyl-tRNA synthetase; AltName:
            Full=Cell proliferation-inducing gene 32 protein;
            Includes: RecName: Full=Glutamyl-tRNA synthetase;
            AltName: Full=Glutamate--tRNA ligase; Short=GluRS;
            Includes: RecName: Full=Prolyl-tRNA synthetase; AltName:
            Full=Proline--tRNA ligase
 gi|116496781|gb|AAI26276.1| EPRS protein [Homo sapiens]
 gi|223460490|gb|AAI36466.1| Glutamyl-prolyl-tRNA synthetase [Homo sapiens]
          Length = 1512

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 122/424 (28%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y   P      + +      E  + G      P   S   L  E      +  E+  
Sbjct: 1044 SGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAW 1103

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1104 VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR 1163

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 1164 TREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYE------------------------- 1198

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 1199 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISA---- 1231

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+ G   + G  +S      F+                G   R +  + 
Sbjct: 1232 -------SGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMT 1284

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I             +     C     RL  V   V  D
Sbjct: 1285 MVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRAD 1344

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +     V ++ R TG +  ++  E       
Sbjct: 1345 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVAENEAETKLQA 1403

Query: 441  RFSN 444
               +
Sbjct: 1404 ILED 1407


>gi|300778952|ref|ZP_07088810.1| proline--tRNA ligase [Chryseobacterium gleum ATCC 35910]
 gi|300504462|gb|EFK35602.1| proline--tRNA ligase [Chryseobacterium gleum ATCC 35910]
          Length = 545

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 155/434 (35%), Gaps = 85/434 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    + +   + ++   TG +    P      L+  E    + + KE   +
Sbjct: 86  GCMVIKPYGYAIWEKMRDEMDKKFKETGHVNAYFPLFVPKSLFEAEEKNAEGFAKECAVV 145

Query: 97  AD-------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                                + ++ +I  PT E ++ + +++ I+SYR+LP    Q   
Sbjct: 146 THYRLKTDPDNPSKLIVDPDAKLEEELIVRPTSEAIIWNTYKNWIQSYRDLPILINQWAN 205

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E+R R  + R+ EFL ++ ++   T E +     KM   Y                
Sbjct: 206 VVRWEMRTRLFL-RTAEFLWQEGHTAHATKEEAVEEAEKMNKVY---------------- 248

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                           AD  E  +                    I  L +  E++     
Sbjct: 249 ----------------ADFAENFMAI----------------PVIQGLKTPSERFAG--- 273

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E      + ++ G   + G  ++      F   +GK  +    S+
Sbjct: 274 --------ADETYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFTNKEGKIEHAWATSW 325

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSK 374
           G  + R++ A+I +  D  G++ P ++AP ++ ++ I   ++      +    I A+L  
Sbjct: 326 GT-STRLMGALIMTHSDDFGLVLPPTLAPIQVVIVPIFKGEEQLEQISEVALDIQAKLRA 384

Query: 375 VGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V +D D   + G +FA  +L G P+++ +G + + +  VEI  R    +E  S+E 
Sbjct: 385 KGISVKFDNDTQNKPGWKFAEYELKGVPVRIAMGPRDLENKSVEIARRDNLTKEVRSIEG 444

Query: 434 VINYASHRFSNNRP 447
           + +Y        + 
Sbjct: 445 LDSYIEDLLKTIQQ 458


>gi|301613124|ref|XP_002936063.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase isoform 1 [Xenopus
            (Silurana) tropicalis]
          Length = 1708

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/450 (15%), Positives = 135/450 (30%), Gaps = 77/450 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +     +++ ++ MI  +   G Y   P      + +     +E  + G    
Sbjct: 1213 EAKKEENLPDWYSQVITKSEMIEYYDVSGCYVLRPWAFAIWEAIKEFFDKEIKKLGVENC 1272

Query: 70   SVPTLQS-ADLWVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKS 124
              P   S A L  E      +  E+  +       +       PT E VM   +   ++S
Sbjct: 1273 YFPMFVSQAALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1332

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ ++   T       Y +     L+I
Sbjct: 1333 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFAT-------YEEAAEEVLQI 1385

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                      + A     G     E                                   
Sbjct: 1386 LDLYARVYEDLLAIPVVKGRKTEKEKFA-------------------------------- 1413

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       Y  T +                S+R I+     + G  +S      F+ 
Sbjct: 1414 --------GGDYTTTVEAFISA-----------SSRAIQGATSHHLGQNFSKMFEIVFED 1454

Query: 305  ADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------A 356
                           G + R + A+     D  G++ P  VA  ++ +I           
Sbjct: 1455 PKTPGLKQYAYQNSWGLSTRTIGAMTMVHADNIGMVLPPRVACVQVIIIPCGITNTLSEE 1514

Query: 357  HDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                    C++   RL  V      D       G +F   +L G P+++ VG + + + +
Sbjct: 1515 DKDALLKKCDQYLKRLLNVDVRARADVRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNKQ 1574

Query: 416  -VEIKHRLTGIREDMSLEEVINYASHRFSN 444
             V ++ R  G ++ +S ++           
Sbjct: 1575 FVAVR-RDNGEKQTISEDQAETRLKEILEE 1603


>gi|312601535|gb|ADQ90790.1| Threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 168]
          Length = 370

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/396 (15%), Positives = 121/396 (30%), Gaps = 33/396 (8%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
            +  + +   I E     G  E+  P     +L+  SG    Y  +M +     ++ +I 
Sbjct: 1   MRIYNKIRQKILEFDRNYGFKEVLTPHFGHKELYKISGHLLHYRDDMFKGLKIENEELIP 60

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-GVMRSREFLMKDAYSFDL 165
            P        +F   + SYRNLP+   +    +R E      G+ R R   + + + F  
Sbjct: 61  RPMTCPHHIILFSQQLFSYRNLPYRISEQSRLYRYEKSGALLGLERVRAMDLTEGHIFVS 120

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             +      +   +    +                         F       + + F   
Sbjct: 121 KSQIFSEISHLFQMISEVLDFFKVQIFYIS--------------FSKRDPKNKDKFFQDD 166

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
              D          +             A Y    D    ++  +L +   +S   ++  
Sbjct: 167 QMWDQAEADLKQFLEQNKINYIEKIGEAAFYGPKIDF---QVKTALNKELTISTLQLD-- 221

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGAMRVVAAVIESSHDGKGIIWPDSV 344
             F    K+      +F     K     +   G IG      A++     G    W    
Sbjct: 222 --FLLPEKF----KISFINEHNKKETPILIHRGLIGTYERFIALLLEQSKGNLPFW---- 271

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
                  I +    +   D  +KI+  L  +G +   D   E+I  +   A+L     QV
Sbjct: 272 --ISPKQIIVIPVAEKHNDFAQKIHKILFDLGFNSEIDLRSERISRKIREANLEKINFQV 329

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           I+G + ++ +++  +   +     +SL + ++    
Sbjct: 330 IIGDEEITKNEITYRKFGSPELFRISLVDFVDLLKS 365


>gi|119613715|gb|EAW93309.1| glutamyl-prolyl-tRNA synthetase, isoform CRA_a [Homo sapiens]
          Length = 1511

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 122/424 (28%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y   P      + +      E  + G      P   S   L  E      +  E+  
Sbjct: 1043 SGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAW 1102

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1103 VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR 1162

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 1163 TREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYE------------------------- 1197

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 1198 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISA---- 1230

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+ G   + G  +S      F+                G   R +  + 
Sbjct: 1231 -------SGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMT 1283

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I             +     C     RL  V   V  D
Sbjct: 1284 MVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRAD 1343

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +     V ++ R TG +  ++  E       
Sbjct: 1344 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVAENEAETKLQA 1402

Query: 441  RFSN 444
               +
Sbjct: 1403 ILED 1406


>gi|322706591|gb|EFY98171.1| prolyl-tRNA synthetase [Metarhizium anisopliae ARSEF 23]
          Length = 556

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 140/434 (32%), Gaps = 74/434 (17%)

Query: 27  LRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVES 83
           L+  M+  +    G +   PL       +           G  E S P   S   L  E 
Sbjct: 66  LKAEMVEYYHEISGFFVLRPLSMHIWSTIRKWFSGHIEELGVEEASFPLFLSKTSLDKEK 125

Query: 84  GRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              D +  E+  +      + D  +   PT E VM   +   I+S+R+LP    Q     
Sbjct: 126 DHVDGFAPELAWVERAGDKKLDVPVAIRPTSEAVMYPYYAKWIRSHRDLPLRLNQWNSVV 185

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +L           
Sbjct: 186 RWEAKQTTPFLRTREFLWQEGHTAHLTEELAGEEVLEILELYAGVYEQL----------- 234

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                                     +    +  E++   Y  T
Sbjct: 235 -------------------------------------LAVPVVRGRKTENEKFAGGYYTT 257

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  +   +P N     RGI+ G     G  +S     T +    K  +V +     
Sbjct: 258 ------TVEGYIPSNG----RGIQGGTSHCLGQNFSKMFEITVEDPHNKGQHVHVWQNSW 307

Query: 320 G-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-------QVCRDACEKIYAR 371
           G + RV+  ++    D KG++ P  VA  +   I +  +        Q   D  E + A 
Sbjct: 308 GLSTRVIGVMVMVHGDDKGLVLPPRVAQTQAIFIPVGINKNTTPEDRQKHEDQIEDMRAT 367

Query: 372 LSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L K G     D   G     +F   ++ G P+++  G K  +   V    R TG +  + 
Sbjct: 368 LKKAGVRTQSDWREGYTPAWKFNDWEMKGVPVRLEFGPKDAAKEVVSFARRDTGEKGTIP 427

Query: 431 LEEVINYASHRFSN 444
           + ++          
Sbjct: 428 IADIATKIPELLET 441


>gi|213623005|ref|ZP_03375788.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 523

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 99/322 (30%), Gaps = 33/322 (10%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDE-VNACIRMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G + I ++  + P     S E                   D          ++   
Sbjct: 408 YSTFGFEKIVVKLSTRPDKRIGSDE-----------------MWDRAEADLAVALEENNI 450

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                    A Y    +     L+D L    +     ++    F   ++ S    A++ G
Sbjct: 451 PFEYQLGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVG 499

Query: 305 ADGKDHYVQMGSYGIGAMRVVA 326
            D +     M    I       
Sbjct: 500 EDNERKVPVMIHRAILGSMERF 521


>gi|261402296|ref|YP_003246520.1| prolyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
 gi|261369289|gb|ACX72038.1| prolyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
          Length = 464

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 89/416 (21%), Positives = 152/416 (36%), Gaps = 72/416 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   +LP G K       +IR+  + TG  E   P L   DL   E+     +  E+  +
Sbjct: 34  GCGVYLPYGFKIRRYAFELIRKLLDETGHDETLFPMLIPEDLLAKEAEHIKGFEDEVYWV 93

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                   D  +   PT E  +  + R  +K + +LP   YQI   FR E +    ++R 
Sbjct: 94  THGGKTPLDVKLALRPTSETPIYYMMRLWVKVHTDLPIKVYQIVNTFRYETKHTRPLIRL 153

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           RE                                               +    +H    
Sbjct: 154 REI----------------------------------------------MTFKEAHTAHS 167

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII--SLNSIVEQWTAPYAATSDVHNEKLFDS 270
             +  E QV       +  I      FD +    L S   +W     A   +  + +F  
Sbjct: 168 TKEEAEKQV-------EEAISIYKKFFDVLGIPHLVSKRPEWDKFPGAEYTMAFDTIF-- 218

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            P+      R +++  +   G  +S      F+   G   +     YGI + RV+A++I 
Sbjct: 219 -PDG-----RVMQIATVHNLGQNFSKTFEIIFETPTGDKDFAYQTCYGI-SDRVIASIIA 271

Query: 331 SSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
              D KG+I P  VAP +I ++ +  K   ++  +  ++IY RL      V+ DD   + 
Sbjct: 272 IHGDEKGLILPPVVAPLQIVIVPLIFKGKKEIVMEKSKEIYERLKDK-YRVYIDDRDIRP 330

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +F   ++ G PL++ VG K +   K+ I  R T  +  +  E++ +      +N
Sbjct: 331 GKKFYDWEIKGVPLRIEVGPKDIESGKITIFRRDTMEKFQVEDEQLEDEIEKTLNN 386


>gi|255548247|ref|XP_002515180.1| prolyl-tRNA synthetase, putative [Ricinus communis]
 gi|223545660|gb|EEF47164.1| prolyl-tRNA synthetase, putative [Ricinus communis]
          Length = 501

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 139/422 (32%), Gaps = 68/422 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +      E  +        P   S+  L  E    + +  E+  
Sbjct: 48  SGCYILRPWAMSIWEVMQTFFDAEIKKMKIKNCYFPLFVSSSVLEKEKDHIEGFAPEVAW 107

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   +   I+ +R+LP    Q     R E       +R
Sbjct: 108 VTKSGKSDLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIR 167

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T E +     ++   Y  I                        EF+
Sbjct: 168 SREFLWQEGHTAFATKEEADEEVLQILELYRCI----------------------YEEFL 205

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                         +    S  E++      TS      +   +
Sbjct: 206 A--------------------------VPVVKGKKSEREKFAGGLYTTS------VEAFI 233

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     + RGI+       G  ++      F+   G+   V   S+   + R +  ++  
Sbjct: 234 PN----TGRGIQGATSHCLGQNFAKMFEINFENEKGEKGMVWQNSWAY-STRTIGVMVMV 288

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGE-Q 387
             D KG++ P  VA  ++ +I +   D   Q   DAC +    L KVG     D      
Sbjct: 289 HGDDKGLVLPPKVASVQVIVIPVPYKDADTQGIFDACTETVDALCKVGIRAESDFRDNYS 348

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            G +++  ++ G PL++ +G K +++++V    R    ++D+S   ++          + 
Sbjct: 349 PGWKYSHWEVKGVPLRIEIGPKDLANNQVRTVRRDNATKKDISRVNLVEQVKEILDAIQQ 408

Query: 448 VL 449
            L
Sbjct: 409 SL 410


>gi|27262218|gb|AAN87390.1| Threonyl-tRNA synthetase [Heliobacillus mobilis]
          Length = 311

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/340 (17%), Positives = 111/340 (32%), Gaps = 38/340 (11%)

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTP 167
            +      ++++ I SYR+LP    ++ L  R E+     G+MR R F   DA+ F L P
Sbjct: 1   MNCPGSMLVYKNSIHSYRDLPLRMAELGLVHRHEISGALHGLMRVRCFTQDDAHIFML-P 59

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
              K     +     R +   G                   ++ +   T   +   S + 
Sbjct: 60  SQIKEEIMGVIDLVDRFYKTFG------------------FDYHIELSTKPEKAMGSDEI 101

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            +    S             I     A Y    D H           K    R  + G I
Sbjct: 102 WELATSSLEDALKSKGMDYKINPGDGAFYGPKIDFHL----------KDCLGRTWQCGTI 151

Query: 288 FYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
                +       T+ G DG+ H    +     G++     ++    +     +P  +AP
Sbjct: 152 -QLDFQMPERFDLTYVGEDGQKHRPVMIHRVVFGSIERFIGILT---EHFAGAFPAWLAP 207

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            ++ ++ I           +K+ A L++ G     DD  E+IG +     +   P  ++V
Sbjct: 208 VQVRVLPITDRHH---AYAQKVLAHLAERGIRAEVDDRNEKIGYKIREGQVKKIPYLLVV 264

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G K   +  V ++    G +    L+E            +
Sbjct: 265 GDKEAENGAVAVRKYGEGDKGACGLDEFTKMLIEEIGTKK 304


>gi|260896982|ref|ZP_05905478.1| threonine--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|308087658|gb|EFO37353.1| threonine--tRNA ligase [Vibrio parahaemolyticus Peru-466]
          Length = 290

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 96/320 (30%), Gaps = 36/320 (11%)

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
             +      +   +      G+MR R F   DA+ F  T    +             +  
Sbjct: 1   FRYVCRVWLMSRNEPSGALHGIMRVRGFTQDDAHIFC-TESQIQEEVTSCIKMVYDTYQT 59

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            G  +I ++  + P     S E                   D    +     + +     
Sbjct: 60  FGFDNIVVKLSTRPEKRVGSDE-----------------IWDQSEEALKQSLESMEIPYE 102

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           I E   A Y    +     L+D L    +     ++       G        AT+ G + 
Sbjct: 103 IQEGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLPGRLG--------ATYVGENN 151

Query: 308 KD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           +    V +    +G++     ++   + G    W        +++              +
Sbjct: 152 ERLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVLMNIT------DKQSGYVQ 205

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +I  +L K G     D   E+IG +     L   P  ++VG + +   ++ ++ R     
Sbjct: 206 EIVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVVGDQEMEAGEIAVRTRKGKDL 265

Query: 427 EDMSLEEVINYASHRFSNNR 446
               +++ I Y     S+ +
Sbjct: 266 GKFKVDDFIAYIQDEISSRK 285


>gi|242081969|ref|XP_002445753.1| hypothetical protein SORBIDRAFT_07g025100 [Sorghum bicolor]
 gi|241942103|gb|EES15248.1| hypothetical protein SORBIDRAFT_07g025100 [Sorghum bicolor]
          Length = 508

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 139/417 (33%), Gaps = 68/417 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P   +  + +      E  +        P   + + L  E    + +  E+  
Sbjct: 55  SGCYILRPWAMEIWELLKEFFDAEIKKLKLKPYYFPLFVTENVLQKEKDHIEGFAPEVAW 114

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   F   I+S+R+LP    Q     R E       +R
Sbjct: 115 VTKSGKSELEAPIAIRPTSETVMYPYFSKWIRSHRDLPLRCNQWCNVVRWEFSNPTPFIR 174

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T E +     ++   Y                        +  EF+
Sbjct: 175 SREFLWQEGHTAFATKEEADEEVLQILELY----------------------RRIYEEFL 212

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                              S +E++      TS      +   +
Sbjct: 213 A--------------------------VPVSKGRKSEMEKFAGGLYTTS------VEAFI 240

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     + RGI+       G  ++     TF+   G    V   S+     R +  ++ +
Sbjct: 241 PN----TGRGIQGATSHCLGQNFAKMFDITFENEKGVREMVWQNSWAY-TTRSIGVMVMT 295

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
             D KG++ P  VAP ++ +I +   D      + ACE     L++ G     D      
Sbjct: 296 HGDDKGLVLPPKVAPIQVIVIAVPYKDADTTAIKGACESTVYTLNESGIRADQDTRENYS 355

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            G +++  ++ G PL++ +G K +++ +V I  R  G + D+ +  ++         
Sbjct: 356 PGWKYSHWEMKGVPLRIEIGPKDLANKQVRIVRRDNGAKVDIPVTNLVEEVKVLLDE 412


>gi|89890591|ref|ZP_01202101.1| prolyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
 gi|89517506|gb|EAS20163.1| prolyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
          Length = 492

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 155/436 (35%), Gaps = 85/436 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG      P      L+  E    + + KE   +
Sbjct: 33  GCMVIKPYGYAIWEKMQAELDRMFKETGHQNAYFPLFVPKSLFEAEEKNAEGFAKECAVV 92

Query: 97  AD-------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                                + ++ ++  PT E ++ + ++  I+SYR+LP    Q   
Sbjct: 93  THYRLQNDPDNPGKLRVDPEAKLEEELVVRPTSEAIIWNTYKGWIQSYRDLPLLINQWAN 152

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E+R R  + R+ EFL ++ ++   T + +     +M   Y                
Sbjct: 153 VVRWEMRTRLFL-RTAEFLWQEGHTAHSTKKEAIAEAEQMNDIY---------------- 195

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                  D +  F+                              +  L +  E++     
Sbjct: 196 ------ADFAQNFMA--------------------------IPVVKGLKTESERFAG--- 220

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E      + ++ G   + G  ++      F   +GK  YV   S+
Sbjct: 221 --------ADETYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFTSKEGKQEYVWATSW 272

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSK 374
           G+ + R++ A+I +  D KG++ P ++AP ++ ++ I   D+   +      ++   L  
Sbjct: 273 GV-STRLMGALIMTHSDDKGLVLPPNLAPNQVVIVPIFKTDEQFEEITTVVNELMKSLRL 331

Query: 375 VGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V +D     + G++FA  +L G PL++ +G++ + +  VE+  R T  +   +++ 
Sbjct: 332 KGVTVKYDKRDTLRPGAKFAQHELQGVPLRIAIGARDLENGTVELARRDTLSKVTTAIDG 391

Query: 434 VINYASHRFSNNRPVL 449
           + +         +  L
Sbjct: 392 IEDKVVALLEEIQSSL 407


>gi|162447162|ref|YP_001620294.1| prolyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
 gi|161985269|gb|ABX80918.1| prolyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
          Length = 474

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/422 (15%), Positives = 135/422 (31%), Gaps = 61/422 (14%)

Query: 25  LMLRTGMIHQH-SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L L+  ++    ++G   + PLG    +N+   +  E  +TG   + +P L    L+  E
Sbjct: 25  LCLKAELMDYSNTQGFIIYRPLGYGIWENIQNYLNNEFRKTGHQNVYMPMLIPESLFQKE 84

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
                 +  E                                                  
Sbjct: 85  KDHVSGFAPE-------------------------------------------------- 94

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                      E L +       +       Y+K+  SY  +          +R E    
Sbjct: 95  --TAMVTTTGVENLSERLIIRPTSEVLFGTHYSKIVKSYRDLPKMYNQWCSVVRWEKTTR 152

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 EF+         V  + +            +D +      +   T         
Sbjct: 153 PFLRGKEFLWQ---EGHTVHATAEEAKKETHQMLEVYDKLGKELLAIPFVTGRKTDKEKF 209

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                  ++ E      + ++ G   YFG +++      F     +  Y    S+G+ + 
Sbjct: 210 AGALETYAI-EALMHDGQALQSGTSHYFGNEFAHAFDIKFLNDKNELEYAYQTSWGV-ST 267

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R++ A+I    D  G++ P  VAP ++ ++ I+ + +    A ++I   LS     VF D
Sbjct: 268 RLIGAIIMVHGDDNGLVLPPYVAPTQVVIVPIRPN-EEVLSAVKQIENELSDK-FRVFVD 325

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D  +  G +F+  ++ G PL++ +G + + + +V +  R    +  ++L ++  +     
Sbjct: 326 DSDKSPGWKFSEHEMKGVPLRIEIGPRDLENGQVVVTFRHNYEKHTVALTDLHKFVEDGL 385

Query: 443 SN 444
             
Sbjct: 386 KT 387


>gi|255545202|ref|XP_002513662.1| prolyl-tRNA synthetase, putative [Ricinus communis]
 gi|223547570|gb|EEF49065.1| prolyl-tRNA synthetase, putative [Ricinus communis]
          Length = 548

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/423 (18%), Positives = 141/423 (33%), Gaps = 80/423 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +  +   TG   M  P       +  E+   + +  E+  +     K
Sbjct: 105 PYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGK 164

Query: 103 AMIY----GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E ++  +F   I SYR+LP    Q     R E+R     +R+ EFL +
Sbjct: 165 ELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMVNQWANVTRWEMR-TKPFVRTLEFLWQ 223

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   TPE ++    +M   Y +  +                                
Sbjct: 224 EGHTAHATPEEAEKEALQMIDVYTKFAY-------------------------------- 251

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                           E      I    S VE +              +     E     
Sbjct: 252 ----------------EQAAIPVIAGRKSKVETFAG-----------AVRTYTIEAMMGD 284

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G     G  +S      F   +G+  +V   S+ I + R V  +I +  D  G+
Sbjct: 285 RKALQAGTSHNLGQNFSRAFGTQFTDENGQRQHVWQTSWAI-STRFVGGIIMTHGDDTGL 343

Query: 339 IWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
           + P  +AP ++ ++ I   D       +A   +   L   G  V  DD  ++  G +F  
Sbjct: 344 MLPPKIAPIQVVIVPIWKKDTEKAGVLNAASSVREVLQSSGLKVKLDDSDQRTPGWKFNF 403

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDM-------SLEEVINYASHRFSNNR 446
            ++ G PL++ +G + VS   V I  R   G +  +       S+  +  Y   +    +
Sbjct: 404 WEMKGVPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSI--LEAYVKDKLDEIQ 461

Query: 447 PVL 449
             L
Sbjct: 462 SSL 464


>gi|269125121|ref|YP_003298491.1| prolyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
 gi|268310079|gb|ACY96453.1| prolyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
          Length = 477

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/419 (15%), Positives = 142/419 (33%), Gaps = 74/419 (17%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G +  + + A +       G      P       L  E+   + +  E+  +     K
Sbjct: 35  PYGYRIWELLQADLDRRIKEAGHDNACFPMFIPESYLRREAEHVEGFSPELAVVTVAGGK 94

Query: 103 AMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E V+ +     I S+R+LP    Q     R ELRPR   +R+ EFL +
Sbjct: 95  ELEEPLVVRPTSETVIGEYMAKWIDSHRDLPLLLNQWANVVRWELRPRM-FLRTTEFLWQ 153

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++  +    +         +Y                                     
Sbjct: 154 EGHTAHIDEADAMRETEWALDTY------------------------------------- 176

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                        +  E      +    +  E++              +     E     
Sbjct: 177 -----------AAVARELAAMPVVPGEKTAGERFAG-----------AVRTYTIEGMMRD 214

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G   Y GT ++   +  ++  +G   Y    S+G+ + R++  VI +  D KG+
Sbjct: 215 GRALQAGTSHYLGTNFAKAFNIQYQDEEGALQYAHTTSWGM-STRMIGGVIMTHGDDKGL 273

Query: 339 IWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDD-MGE-QIGSQFAV 394
           + P  +AP+++ ++ I   +  +       ++ A +  +G  V  DD   +   G +F  
Sbjct: 274 VLPPRLAPYQVVIVPIGRKEQGEATAAEARRLGAAIKSMGIRVHVDDNRPQLSPGFKFND 333

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLEEVINYASHRFSNNRPVL 449
            ++ G P+++ +G + ++D    +  R        +E + L  +        ++ +  L
Sbjct: 334 WEMRGVPIRIEIGPRDLADGVGTLARRLPTAEGQGKETIPLARLPEELPQILADFQAFL 392


>gi|325282970|ref|YP_004255511.1| Prolyl-tRNA synthetase [Deinococcus proteolyticus MRP]
 gi|324314779|gb|ADY25894.1| Prolyl-tRNA synthetase [Deinococcus proteolyticus MRP]
          Length = 505

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/408 (16%), Positives = 146/408 (35%), Gaps = 69/408 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL----AD 98
           P G    + +   + +    TG   +  PTL     +  E+   + +  E+  +     +
Sbjct: 62  PYGTALWERIQRGLDDRFKATGHQNLLFPTLIPMGFIMKEADHVEGFAPELFTVSKIGTE 121

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
              +  +  PT E ++  ++   + SYR+LPF   Q    FR ELR     +R+ EF  +
Sbjct: 122 ELAEPYVMRPTSETIIGHMWSGWLNSYRDLPFLHNQWGSVFRAELR-TKPFLRTSEFFWQ 180

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   +   ++    +                                         E
Sbjct: 181 EGHTAHASEAEARAEVRQQLD--------------------------------------E 202

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
              FC        +  E T  +                                E     
Sbjct: 203 YHSFCRDVLALPVVRGEKTASERFAG---------------------AENTYSIEGMMRD 241

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   Y G  +S      F+ A+ ++ +    S+G+ + R++ A+I +  D  G+
Sbjct: 242 GKALQSGTSHYLGQNFSRAFEVKFQTAEQREEFAYTTSWGL-SSRIIGALIMTHGDDFGL 300

Query: 339 IWPDSVAPFKISLINIKAHDQVCR--DACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
           + P ++AP ++ ++ +   +   R  +    + A L + G  V  DD  G   G ++   
Sbjct: 301 MLPPNIAPIQVVIVPVGRKEDFARMVEEARTLAAELEREGIRVKVDDREGLTNGFKYNDW 360

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +L G P+++ +G + +   ++ +K+R +  +E +   + ++    R  
Sbjct: 361 ELKGVPVRIELGPRDLEAGQLVVKNRTSEDKETLGRVDAVSSMDARLD 408


>gi|15228692|ref|NP_191771.1| tRNA synthetase class II (G, H, P and S) family protein
           [Arabidopsis thaliana]
 gi|30695549|ref|NP_850736.1| tRNA synthetase class II (G, H, P and S) family protein
           [Arabidopsis thaliana]
 gi|6899922|emb|CAB71872.1| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis
           thaliana]
 gi|16648885|gb|AAL24294.1| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis
           thaliana]
 gi|22136084|gb|AAM91120.1| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis
           thaliana]
 gi|332646791|gb|AEE80312.1| prolyl-tRNA synthetase [Arabidopsis thaliana]
 gi|332646792|gb|AEE80313.1| prolyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 530

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/420 (15%), Positives = 135/420 (32%), Gaps = 68/420 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ-SADLWVESGRYDSYGKEMLR 95
            G Y   P      + +      E  +        P       L  E    + +  E+  
Sbjct: 77  SGCYILRPWSMAIWEIMQIFFDAEIKKMKVKNCYFPLFVSPGVLEKEKDHIEGFAPEVAW 136

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   +   I+ +R+LP    Q     R E       +R
Sbjct: 137 VTKSGKSDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIR 196

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T   +     ++   Y                        +  E++
Sbjct: 197 SREFLWQEGHTAFATKAEADEEVLQILELY----------------------RRIYEEYL 234

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                         +  + S  E++      TS      +   +
Sbjct: 235 A--------------------------VPVVKGMKSENEKFAGGLYTTS------VEAFI 262

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     + RG++       G  ++      F+    +   V   S+   + R +  +I +
Sbjct: 263 PN----TGRGVQGATSHCLGQNFAKMFEINFENEKAETEMVWQNSWAY-STRTIGVMIMT 317

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGE-Q 387
             D KG++ P  VA  ++ +I +   D   Q   DAC    + L + G     D      
Sbjct: 318 HGDDKGLVLPPKVASVQVVVIPVPYKDANTQGIYDACTATASALCEAGIRAEEDLRDNYS 377

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            G +++  ++ G PL++ +G + + + +V    R  G++ED+    ++ +        + 
Sbjct: 378 PGWKYSDWEMKGVPLRIEIGPRDLENDQVRTVRRDNGVKEDIPRGSLVEHVKELLEKIQQ 437


>gi|312137261|ref|YP_004004598.1| prolyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
 gi|311224980|gb|ADP77836.1| prolyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
          Length = 466

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 85/452 (18%), Positives = 163/452 (36%), Gaps = 86/452 (19%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++  IL+    +AEI   +  ++         G+++WLP G K    +   +R+  +
Sbjct: 4   FSEWYHEILE----NAEIIDSRYPVK---------GMHAWLPYGFKIRKKIIETLRKLLD 50

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
                E+  P L   + L  ES     +  E+  +      +  + +   PT E  M  +
Sbjct: 51  E-DHDEVLFPLLIPEEELMKESIHIKGFEDEVYWVTHGGKAKLKRKLALRPTSETAMYPM 109

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F   I+++++LP   YQI   FR E +                                 
Sbjct: 110 FSLWIRTHKDLPLKVYQIVNTFRYETK--------------------------------- 136

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                + P+           A T    +  ++  +   I    T
Sbjct: 137 --------------------HTRPLIRIREITTFKEAHTVHKTLEGAEKQVKKAINIYKT 176

Query: 238 DFDDIISLN--SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
            FD +      +   +W     A   +  + L    P+      R +++G I   G  +S
Sbjct: 177 FFDSLGIPYLITKRPEWDKFPGAVYTIAFDTLM---PDG-----RTLQIGTIHNLGQNFS 228

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD--SVAPFKISLIN 353
                TF+  +GK  +     YG+ + RV+A+VI    D KG+  P   +     I  I 
Sbjct: 229 KTFDITFETEEGKHEHAYQTCYGV-SDRVIASVISIHGDEKGLCLPPKIAPIQIVIVPII 287

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
            K  ++   + C+ +  +L +    V  DD   + G +F   ++ G PL++ +G K +  
Sbjct: 288 FKETEEEVLEFCKNVEKKLKEGKLKVHLDDRDIRAGRKFYEWEMKGIPLRIEIGPKDIEK 347

Query: 414 SKVEIKHRLTGIREDMSLEE-VINYASHRFSN 444
           +KV +  R +G + D+  ++  +         
Sbjct: 348 NKVVVVRRDSGEKMDVKFDDNFVENIKSIIEK 379


>gi|149235762|ref|XP_001523759.1| hypothetical protein LELG_05175 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146452738|gb|EDK46994.1| hypothetical protein LELG_05175 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 688

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 132/424 (31%), Gaps = 75/424 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +      +    G      P   S   L  E    + +  E+  
Sbjct: 215 SGCYILRPNSYAVWETIQDYFNTKIKALGVQNAYFPMFVSQKVLEKEKDHIEGFAPEVAW 274

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        ++ +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 275 VTRAGSSELEEHIAIRPTSETVMYPYYAKWIRSHRDLPIKLNQWNSVVRWEFKHPQPFLR 334

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++           K +  ++                                  
Sbjct: 335 TREFLWQE---GHTAHLYKKEAEEEVLQILDYY--------------------------- 364

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                               I  E      +    +  E++    Y  T +         
Sbjct: 365 ------------------AAIYEELLAVPVVKGKKTENEKFAGGDYTTTVEGFIPA---- 402

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIG-AMRVVAAV 328
                  + RGI+ G   + G  +S   + + +  +G +   +       G + RV+  +
Sbjct: 403 -------TGRGIQGGTSHHLGQNFSKMFNMSVESPEGPEKGRLFAYQNSWGLSTRVIGVM 455

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFW 381
           + +  D KG++ P  VA  ++ +I +           +        I +RL K G  V  
Sbjct: 456 VMTHSDNKGLVLPPRVAQTQVVVIPVGITAKTSAEQREQINKGAADIESRLKKAGIRVTG 515

Query: 382 DDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D       G +FA  +L G PL+V  G K +   +V    R  G + ++ L  + +  + 
Sbjct: 516 DYRDSYNPGWKFADWELKGVPLRVEFGPKDLESEQVTAVRRNDGQKLNVKLAGLESSIAE 575

Query: 441 RFSN 444
               
Sbjct: 576 VLEK 579


>gi|194334392|ref|YP_002016252.1| prolyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
 gi|259511613|sp|B4S9D5|SYP_PROA2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194312210|gb|ACF46605.1| prolyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
          Length = 481

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/454 (16%), Positives = 157/454 (34%), Gaps = 91/454 (20%)

Query: 3   RSKYFLPILQENPRDAEIASHKL----MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
            S++++ +         + S KL     +R  MI +         P G    + + A + 
Sbjct: 12  YSQWYIDL---------VRSAKLADYSDVRGCMIIR---------PNGYAIWEKMQAALD 53

Query: 59  EEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEV 113
                TG +    P       +  E+   + +  E   +     + +       PT E +
Sbjct: 54  AMFKATGHVNAYFPLFIPESFIKKEAEHIEGFAPECAVVTHGGGEQLAENLYVRPTSETI 113

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           +   ++  I+SYR+LP    Q     R E+R R  + R+ EFL ++ ++   T   ++  
Sbjct: 114 IWSSYKKWIQSYRDLPILINQWANVVRWEMRTRLFL-RTTEFLWQEGHTAHATSTEAQEE 172

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
             +M   Y                           E++                      
Sbjct: 173 VMRMINVYKTFA----------------------EEYMA--------------------- 189

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                   I+   +  E++                    E      + ++ G     G  
Sbjct: 190 -----LPVIMGRKTESEKFAGAVETW-----------CIEAMMQDKKALQAGTSHNLGQN 233

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           ++      F+  +G   YV   S+G+ + R++ A+I +  D +G++ P  +A  ++ +I 
Sbjct: 234 FAKAFDCRFQSKEGALEYVWATSWGV-STRLIGALIMAHSDDRGLVLPPKLATRQVVIIP 292

Query: 354 IKAHD-QVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFV 411
           I   D     +    I A L++ G   F DD      G +FA  +L G P+++ +G + +
Sbjct: 293 ILKGDISAVIEKARSIAAELNQKGIAAFVDDSDQNSPGWKFAEYELQGIPVRLELGPRDI 352

Query: 412 SDSKVEIKHRLTGIREDMSLE-EVINYASHRFSN 444
             S      R TG +  + L+  + +  +    +
Sbjct: 353 QSSTCIAARRDTGEKSKLQLDSSLADQINSLLES 386


>gi|291515023|emb|CBK64233.1| prolyl-tRNA synthetase [Alistipes shahii WAL 8301]
          Length = 494

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/429 (13%), Positives = 139/429 (32%), Gaps = 49/429 (11%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L+++ G+    +  G     P G    + + A + +    TG      P       +  E
Sbjct: 22  LVVKAGLAENSAVRGCMVIKPYGYAIWEKMQAALDKMFKDTGHQNAYFPLFIPKSFFSKE 81

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +   + + KE   +                          +   +       +    + E
Sbjct: 82  AHHVEGFAKECAVVTH-----------------------YRLKNDPEGKGVVVDPDAKLE 118

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                                        ++Y     SY  +       +  +R E    
Sbjct: 119 EELIVRPTS---------------ETIIWNTYKNWIQSYRDLPILCNQWANVVRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+     G T     ++ ++         +         +       +     
Sbjct: 164 LFLRTAEFL--WQEGHTAHATREEAVEEAEKMIRV-YRKFAEEWMSLPVVVGHKSPNERF 220

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              +   ++ E      + ++ G   + G  ++      +   +GK  YV   S+G+ + 
Sbjct: 221 AGAEDTLTI-EALMQDGKALQSGTSHFLGQNFAKAFDVQYVNKEGKLEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I    +   + C +   I A L   G  V
Sbjct: 279 RLMGALIMAHSDNNGLVLPPKLAPIQVVMVPIYKTPEQLAEICARFGAIAAELRDKGISV 338

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             DD    + G +FA  +L G P+++ +G + + +  +E+  R T  ++ +S E ++   
Sbjct: 339 KIDDRDNVRPGFKFAEYELKGVPVRLAMGGRDLENGTIELVRRDTLEKQTISQEGLVERI 398

Query: 439 SHRFSNNRP 447
               +  + 
Sbjct: 399 EGLMAEIQE 407


>gi|167759625|ref|ZP_02431752.1| hypothetical protein CLOSCI_01983 [Clostridium scindens ATCC 35704]
 gi|167662751|gb|EDS06881.1| hypothetical protein CLOSCI_01983 [Clostridium scindens ATCC 35704]
          Length = 480

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/415 (15%), Positives = 126/415 (30%), Gaps = 66/415 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  ++LP G    + + A + +    TG   + +PTL    L   E+   + +  E+   
Sbjct: 39  GCLNYLPNGYAIWELIQADLDKRFKETGVENVYLPTLIPESLLEKEADHIEGFAPEV--- 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                             +      E L
Sbjct: 96  -------------------------------------------------AWVTHGGMERL 106

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +       +       + K   SY  +       +  +R E        S EF+     
Sbjct: 107 QERLCIRPTSETLFCDLWAKTVQSYRDLPKVWNQWNTVLRWEKTTRPFLRSREFLWQ--- 163

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA----ATSDVHNEKLFDSLP 272
                        +    E T     +  +   E    P+     A  +           
Sbjct: 164 -----EGHTIHATYEEAEERTIQMLHVYEDCYKETLAIPFVSGRKAEHEKFAGAQDTYTI 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++     +FG+ +       +   + +   V   S+G  + R + A+I   
Sbjct: 219 EALMHDGKALQSATSHFFGSGFPDAFGIKYVDKNNQLQSVYETSWGW-STRSIGALIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP +  +I I  H +   D    +   L K G  V  DD  +  G +F
Sbjct: 278 GDDSGLVLPPHVAPVECRIIPIAQHKEGVLDRSFALLDELKKAGYRVKIDDSDKSTGWKF 337

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +  ++LG P ++ +G K +  ++V +  R    +  +SL+E+           + 
Sbjct: 338 SEQEMLGIPTRIEIGPKDIEKNQVVVVRRDNREKIVVSLDEIAVKLRDILEQEQQ 392


>gi|71004672|ref|XP_757002.1| hypothetical protein UM00855.1 [Ustilago maydis 521]
 gi|46096696|gb|EAK81929.1| hypothetical protein UM00855.1 [Ustilago maydis 521]
          Length = 734

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/428 (16%), Positives = 129/428 (30%), Gaps = 79/428 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
            G Y   P       ++      E  + G      P   SAD+   E    + +  E+  
Sbjct: 254 SGCYILKPWSYFVWQSIQNFFDAEIKKIGVENCYFPMFVSADVLEREKDHIEGFAPEVAW 313

Query: 96  LADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 314 VTKAGSSDLERPVAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWNSVVRWEFKHPQPFLR 373

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++                                            G  +H  +
Sbjct: 374 TREFLWQE--------------------------------------------GHTAHISL 389

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             AD     +      +   + +       +  + S  E++   Y  T       +   +
Sbjct: 390 EEADKEVMHILDLYRQVYEKLLA----VPVVPGVKSEKEKFAGGYYTT------TVEGFV 439

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-------QMGSYGIG-AMR 323
           P     + RGI+ G     G  +S       +     + +         +     G + R
Sbjct: 440 P----TTGRGIQGGTSHCLGQNFSKMFGIMVEDPKAPEEFRGKDEGKLHVWQNSWGLSTR 495

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVG 376
            +  ++    D  G++ P  VA  ++ +I             Q   DAC++    L   G
Sbjct: 496 TIGVMVMVHGDDDGLVMPPRVAQVQVIIIPCGIGVKTSAQEKQNIMDACDQTAKDLQAAG 555

Query: 377 CDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                D       G +F   +L G P+++ +G K +    V    R    +   S++ + 
Sbjct: 556 IRAKADLRDNYSPGFKFNDWELRGVPVRLEIGPKDLEKKSVVAVRRDNKAKTSFSVDGLY 615

Query: 436 NYASHRFS 443
              S    
Sbjct: 616 GSISTLLD 623


>gi|299821392|ref|ZP_07053280.1| proline--tRNA ligase [Listeria grayi DSM 20601]
 gi|299817057|gb|EFI84293.1| proline--tRNA ligase [Listeria grayi DSM 20601]
          Length = 495

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/410 (15%), Positives = 125/410 (30%), Gaps = 62/410 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRL 96
           G     P G    + +   I      TG   + +P L     L  E+   + +  E+  +
Sbjct: 53  GCMVIRPTGYALWEGIQQYIDRHLKATGHENVYMPLLIPEGKLKQEAEHVEGFAPELAWI 112

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            +  ++ +                                                  F 
Sbjct: 113 TETGEEKLAERLAIR-------------------------------------PTSEVLFA 135

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                      +  K       V  L    R  L++             L  E     +T
Sbjct: 136 EHFKEIIHSHRDLPKRYNQWANVVRLEKNTRPFLRTTEF----------LWQEGHTCHET 185

Query: 217 GETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            E         +D    +  E      +    +  E++                    E 
Sbjct: 186 HEEAQEEVMAILDLYTAVCEELLAIPVVKGRKTARERFAG-----------ARETYTLET 234

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + +++      G  +S      F   +G D  V   S+GI   R + A+I    D
Sbjct: 235 LMYDGKALQIATSHDLGDVFSSAFGIEFTNREGIDTPVYQSSWGI-TTRTIGALIMVHGD 293

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            +G++ P  +AP ++ ++ I  H +    A E I ARL + G     D   +Q G +F  
Sbjct: 294 DRGLMLPPRIAPIQVIIVPIAQHKEGVIAAGESILARLQEKGIRTKIDLSDKQPGWKFNE 353

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +++ G P+++ +G + +   +V +  R TG +  +++E +  Y +     
Sbjct: 354 SEMKGIPIRIEMGPRDMEAGQVIVVRRDTGEKTAVAMEGLEAYVTELLET 403


>gi|330791908|ref|XP_003284033.1| hypothetical protein DICPUDRAFT_74994 [Dictyostelium purpureum]
 gi|325086079|gb|EGC39475.1| hypothetical protein DICPUDRAFT_74994 [Dictyostelium purpureum]
          Length = 606

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 106/391 (27%), Positives = 179/391 (45%), Gaps = 18/391 (4%)

Query: 4   SKYFLPILQENPRDAEIA-SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           SK F+P   +   + ++  S  LM + G+I + + G YS LP  QKAL+N+  +I EE  
Sbjct: 46  SKMFIPFQ-DQKMETDLIESQLLMQKGGLIRKLAVGSYSTLPFAQKALENLIKVIDEEME 104

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  +M++P +   +LW ++GR+D++GK++++L DR +     GPTHEEV+T I  +  
Sbjct: 105 QVGGQKMTMPKMIPKELWDKTGRWDAFGKDLIKLKDRRENEYCMGPTHEEVVTSIVGNEK 164

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
             + N P   YQI  KFRDE+RPRFG++R +EFLMKD YSFD+T E ++ +Y ++  +Y 
Sbjct: 165 LPFNNFPIKLYQIGEKFRDEIRPRFGLLRGKEFLMKDMYSFDVTKEDAEKTYYQVKQAYH 224

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-------------MD 229
            I  RL L    + A+SG IGG++SHEF V+   GE ++    +                
Sbjct: 225 NILDRLELPYACVEADSGNIGGNMSHEFQVVTKAGEDKLIHCSNCGYHANIEKAVGLKSK 284

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
             I        +I+ + +  ++     A   +   +       +    + + IE      
Sbjct: 285 ENINDTFDPIFNIVRIETNQKKNNKHIAIVVNDSQDTFNHYSIKKHYNNIKSIEPITKNQ 344

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           +    S   S      +         +      +   A++E       I           
Sbjct: 345 YTDLLSKHNSKE--NGELNYQIFVDTNASKPFSKNQDALLEQIKSEFSINLNKDHKIIDS 402

Query: 350 SLINIKAHDQVCRDACEKIYARL-SKVGCDV 379
            ++       +C        ++L  K G +V
Sbjct: 403 DILIEAKEGDICAQESCNGSSKLGIKKGIEV 433



 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 15/158 (9%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE---- 330
           K    +GIEVGHIFY G KYS   +AT    +     ++MG +GIG  R++AA +E    
Sbjct: 424 KLGIKKGIEVGHIFYLGNKYSSSFNAT-SCKNNIVKDLEMGCFGIGVSRLLAASVEALSK 482

Query: 331 ---SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV----GCDVFWDD 383
                                   I I    +  +   E+I  +L +        +  DD
Sbjct: 483 SGKEIDGTVTKDKITFPKEITPYHIIIVPKKESLQKDAEEISQQLQQQIPELKGRIIIDD 542

Query: 384 M-GEQIGSQFAVADLLGFPLQVI--VGSKFVSDSKVEI 418
                +G +   +  LG P  ++  +     ++ KVE 
Sbjct: 543 RHDANVGHKIFESKFLGIPYLLVLNIDKSKQTNYKVEY 580


>gi|317502695|ref|ZP_07960807.1| proline--tRNA ligase [Prevotella salivae DSM 15606]
 gi|315666181|gb|EFV05736.1| proline--tRNA ligase [Prevotella salivae DSM 15606]
          Length = 493

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/412 (16%), Positives = 141/412 (34%), Gaps = 48/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A + +E  +TG      P L     L  E+     + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQAELDKEFKKTGVQNAYFPMLIPKSFLSKEAEHVKGFAKECAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                         E+  + +     K    L        + +           R     
Sbjct: 96  THYR------LKASEDGNSVVVDPAAKLDEELIIRPTSETIIWN--------TYRGWIHS 141

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +D          +   +      +LR    L  +     A       +      V AD 
Sbjct: 142 WRDLPIMCNQW-CNVMRWEMRTRPFLRTSEFLWQEGHTAHATKEEAEQEAQTMLKVYADF 200

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E             +P               V+  T  +A   D +         E   
Sbjct: 201 AEK---------WMAVPVL-----------QGVKSETERFAGALDTYT-------IEAMM 233

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++      F   + K  YV   S+G+ + R++ A+I    D  
Sbjct: 234 QDGKALQSGTSHFLGQNFAKSFDVQFLNKENKPDYVWATSWGV-STRLMGALIMVHSDDN 292

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ ++ I   D+  +   +K+     ++ ++G  V +DD   ++ G +F
Sbjct: 293 GLVLPPKLAPIQVVIVPIYKGDEQRKAISDKLQPVITKMQELGISVKFDDSDNKRPGFKF 352

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  +L G P+++++G + + ++ +EI  R T  +E++S + ++        +
Sbjct: 353 ADYELKGVPVRLVMGGRDLENNTIEIMRRDTLEKENVSFDGIVERVQTLLDD 404


>gi|255013835|ref|ZP_05285961.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_7]
 gi|256839822|ref|ZP_05545331.1| prolyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|298375581|ref|ZP_06985538.1| proline--tRNA ligase [Bacteroides sp. 3_1_19]
 gi|256738752|gb|EEU52077.1| prolyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|298268081|gb|EFI09737.1| proline--tRNA ligase [Bacteroides sp. 3_1_19]
          Length = 493

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 144/419 (34%), Gaps = 62/419 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +  I+ +    TG +    P L     L  E+   + + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQRILDDMFKETGHVNAYFPLLIPKSFLSKEAEHVEGFAKECAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +   N   T   +    + E              
Sbjct: 96  TH-----------------------YRLKTNHDGTGVVVDPAAKLE-------------- 118

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----- 211
            ++      +     ++Y     SY  +       +  MR E        + EF+     
Sbjct: 119 -EELIIRPTSETIIWNTYRNWIQSYRDLPILCNQWANVMRWEMRTRLFLRTAEFLWQEGH 177

Query: 212 -VLADTGETQVFCSKDFMDFPIPSENTD-FDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              A   E ++   K    +   +EN      I  + S  E++              L  
Sbjct: 178 TAHATREEAEIEAKKMQEVYANFAENYMAMPVIKGVKSESERFAG-----------ALDT 226

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E      + ++ G   + G  +      TF   +GK  Y    S+G+ + R++ A+I
Sbjct: 227 YTIEAMMQDGKALQAGTSHFLGQNFGKAFDVTFIDKNGKSDYAWATSWGV-STRLIGALI 285

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-G 385
            S  D  G++ P  +AP ++ ++ I    +      EK+    A+L  +G  V +DD   
Sbjct: 286 MSHSDDNGLVLPPHLAPIQVVIVPIYRSAEQLAQISEKVAGIVAKLKALGISVKYDDADN 345

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G +FA  +L G P+++ +G + + ++ +E+  R T  +E ++ + +  Y  +    
Sbjct: 346 KKPGWKFAEYELKGVPVRLAMGGRDLENNTIEVMRRDTLEKETITCDGIEEYVKNLLEE 404


>gi|57999481|emb|CAI45949.1| hypothetical protein [Homo sapiens]
          Length = 1512

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 123/424 (29%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y   P      + +      E  + G      P   S   L  E      +  E+  
Sbjct: 1044 SGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAW 1103

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1104 VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR 1163

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S  +T E +     ++   Y +++                          
Sbjct: 1164 TREFLWQEGHSAFVTVEEAAEEVLQILDLYAQVYE------------------------- 1198

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 1199 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISA---- 1231

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+ G   + G  +S      F+                G   R +  + 
Sbjct: 1232 -------SGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMT 1284

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I             +     C     RL  V   V  D
Sbjct: 1285 MVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRAD 1344

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +     V ++ R TG +  ++  E       
Sbjct: 1345 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVAENEAETKLQA 1403

Query: 441  RFSN 444
               +
Sbjct: 1404 ILED 1407


>gi|83282659|ref|XP_729866.1| prolyl-tRNA synthetase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23488909|gb|EAA21431.1| prolyl-tRNA synthetase, putative [Plasmodium yoelii yoelii]
          Length = 728

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 131/408 (32%), Gaps = 68/408 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
            G Y   P      + +      E  +        P   +   L  E    + +  E+  
Sbjct: 264 SGCYILRPASYYIWECIQTFFNNEIKKLDVENSYFPLFVTKNKLEKEKNHIEGFSPEVAW 323

Query: 96  LADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D      +   PT E +M  +F   I+S+R+LP    Q     R E +     +R
Sbjct: 324 VTKYGDTNLPEEIAIRPTSETIMYSVFSKWIRSHRDLPLKLNQWNTVVRWEFKQPTPFIR 383

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++     E +      +   Y R +                          
Sbjct: 384 TREFLWQEGHTAHKNEEEAVKMVFDILDIYRRWYE------------------------- 418

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                  E      I  + S  E++     A     NE      
Sbjct: 419 -----------------------ECLAVPVIKGIKSEGEKFG---GANFTSTNETFISES 452

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   R I+     Y GT ++      F+       +V   S+G    R +  +I  
Sbjct: 453 G-------RAIQAATSHYLGTNFAKMFKIEFEDEQENKQFVHQTSWGC-TTRSIGVMIMM 504

Query: 332 SHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-Q 387
             D KG+I P +VA +K+ ++ I      +    + C+ I   L     +  +DD     
Sbjct: 505 HSDNKGLILPPNVAKYKVVIVPILYKNTDETAIFNYCKDIEKVLKNAQINCVFDDRDLYS 564

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            G +F   +L G P+++ VG K + ++      R    + ++  E V+
Sbjct: 565 PGYKFNHWELRGIPIRIEVGPKDIQNNSCVFVRRDNNQKFNIKKESVL 612


>gi|149743790|ref|XP_001488980.1| PREDICTED: glutamyl-prolyl-tRNA synthetase isoform 1 [Equus caballus]
          Length = 1512

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 123/424 (29%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
             G Y   P      +++      E  + G      P   S   L  E      +  E+  
Sbjct: 1044 SGCYILRPWAYSIWESIKDFFDAEIKKLGVENCYFPMFVSQGALEKEKTHIADFAPEVAW 1103

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1104 VTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLR 1163

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 1164 TREFLWQEGHSAFATFEEAAEEVLQILDLYAQVYE------------------------- 1198

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 1199 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISA---- 1231

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+ G   + G  +S      F+                G   R +  + 
Sbjct: 1232 -------SGRAIQGGTSHHLGQNFSKMFEIIFEDPKTPGEKQFAYQNSWGLTTRTIGVMT 1284

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIKAHD-------QVCRDACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I     +             C     RL  V   V  D
Sbjct: 1285 MVHGDNMGLVLPPRVACVQVVVIPCGITNALSEEDRDALIAKCNDYRRRLLNVNIRVRVD 1344

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +     V ++ R TG +  ++  E       
Sbjct: 1345 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVAENEAETKLQA 1403

Query: 441  RFSN 444
               +
Sbjct: 1404 ILED 1407


>gi|21674311|ref|NP_662376.1| prolyl-tRNA synthetase [Chlorobium tepidum TLS]
 gi|81860050|sp|Q8KCD1|SYP_CHLTE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|21647484|gb|AAM72718.1| prolyl-tRNA synthetase [Chlorobium tepidum TLS]
          Length = 481

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 152/423 (35%), Gaps = 76/423 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A +     +TG +    P       +  E+   + +  E   +
Sbjct: 33  GCMVIRPNGYAIWEKMQAALDGMFKQTGHVNAYFPMFIPESFIAKEAEHIEGFAPECAVV 92

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E ++   ++  I+SYR+LP    Q     R E+R R  + R+
Sbjct: 93  THGGGEELAEKLYVRPTSETIIWSSYKKWIQSYRDLPILINQWANVVRWEMRTRLFL-RT 151

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   TPE ++    +M   Y                         + E++ 
Sbjct: 152 TEFLWQEGHTAHATPEEAQEEVIRMINIY----------------------RTFAEEYMA 189

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +                            I+   S  E++    A               
Sbjct: 190 M--------------------------PVIVGKKSESEKFAGADA-----------TYCI 212

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G     G  ++      F+  DG   YV   S+G+ + R++ A+I + 
Sbjct: 213 EAMMQDGKALQAGTSHNLGQNFAKAFDCQFQTKDGVLDYVWATSWGV-STRLIGALIMAH 271

Query: 333 HDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
            D KG++ P  +A  ++ +I I K +    R     I   L++ G   F DD      G 
Sbjct: 272 SDDKGLVLPPKLASRQVVIIPILKGNKDEVRARARFIAKTLNRHGIPTFVDDSENNSPGW 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--------MSLEEVINYASHRF 442
           +FA  +L G P+++ +G + +   K  +  R T  + +        +++EE++N      
Sbjct: 332 KFAEYELQGIPVRIELGPRDLEQGKCIVARRDTFEKTELLLDDELTINIEEILNNIQQNL 391

Query: 443 SNN 445
            + 
Sbjct: 392 YDR 394


>gi|299537091|ref|ZP_07050394.1| prolyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298727332|gb|EFI67904.1| prolyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 478

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 146/413 (35%), Gaps = 70/413 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  ++ P G +  +++   +      TG      P L     +  E    + +  E+  +
Sbjct: 29  GCIAFKPDGYEIWEHIQEEMDRRFKETGHRNAYFPMLIPESFFQKEKDHIEGFSPELPWV 88

Query: 97  ADRNDKAMIY----GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
            +   + +       PT E ++  ++ + IKSYR+LP    Q    FR E +     +R+
Sbjct: 89  TEAAGEQLEERLALRPTSETMIGHLYSNWIKSYRDLPVLINQWANVFRWEKK-TLPFIRT 147

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++  +    ++    +M   Y  +                            
Sbjct: 148 SEFLWQEGHTAHVDEADARQETMQMLDIYKEVVE-------------------------- 181

Query: 213 LADTGETQVFCSKDFMDFPIPSEN-TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  QV     +     PSE      D  S+ ++++   A  A TS     K  ++ 
Sbjct: 182 -------QVLAIPVYDGQKTPSERFAGAVDTYSIEAMMKNGKAVQAGTSHYLGTKFAEAF 234

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                  A   E  H   +GT                            + R++ +VI  
Sbjct: 235 NIKYLNKANQHEYVHTTSWGT----------------------------STRLIGSVIMV 266

Query: 332 SHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
             D +G++ P  +AP ++ LI +     +    +  ++I+A L   G  V  DD  +  G
Sbjct: 267 HGDEQGLVLPPRIAPTQVVLIPVGPWKKNPQIMEHLDEIFAALKAKGIRVRLDDSDQSPG 326

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +F   +L G P++V +G + + + +  +K R    +  + L  +I       
Sbjct: 327 YKFNEWELKGVPVRVELGPRDLENKQALLKARDEEEKRTVELASIITAIEEEL 379


>gi|332827078|gb|EGJ99863.1| prolyl-tRNA synthetase [Dysgonomonas gadei ATCC BAA-286]
          Length = 493

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 162/430 (37%), Gaps = 84/430 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   + +    TG +    P       L  E+   + + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLFIPKSFLSKEADHVEGFAKECAVV 95

Query: 97  AD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                               + ++ +I  PT E ++ + +R+ I+SYR+LP    Q    
Sbjct: 96  THYRLKNDPDGKGVIVDPEAKLEEELIVRPTSETIIWNTYRNWIQSYRDLPILVNQWANV 155

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E+R R  + R+ EFL ++ ++   T E ++    +M   Y +               
Sbjct: 156 VRWEMRTRLFL-RTAEFLWQEGHTAHATREEAEAETIQMLNVYAQFA------------- 201

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                     E++ +                            I  + S  E++      
Sbjct: 202 ---------EEYMAM--------------------------PVIKGVKSASERFAG---- 222

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                   +     E      + ++ G   + G  ++      F   +GK  +V   S+G
Sbjct: 223 -------AVDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVRFADKEGKMEHVWATSWG 275

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKV 375
           + + R++ A+I +  D  G++ P  +APF++ ++ I   D+      +  + +   L  +
Sbjct: 276 V-STRLIGALIMAHSDDNGLVLPPKLAPFQVVIVPIYKGDEQLALINEKVDGLVKSLKAL 334

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +D+   ++ G +F+  +L G P+++ +G++ + ++ VE+  R T  +E +S + +
Sbjct: 335 GISVKYDNADNKKPGWKFSEYELKGVPVRLAMGARDMENNTVEVARRDTLTKETVSCDGL 394

Query: 435 INYASHRFSN 444
             Y  +    
Sbjct: 395 DIYIKNLLDE 404


>gi|114572699|ref|XP_001172425.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase isoform 7 [Pan
            troglodytes]
          Length = 1512

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 123/424 (29%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y   P      + +      E  + G      P   S   L  E      +  E+  
Sbjct: 1044 SGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAW 1103

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1104 VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR 1163

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 1164 TREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYE------------------------- 1198

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 1199 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISA---- 1231

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+ G   + G  +S      F+                G   R +  + 
Sbjct: 1232 -------SGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMT 1284

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I             +     C     RL +V   V  D
Sbjct: 1285 MVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLRVNIRVRAD 1344

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +     V ++ R TG +  ++  E       
Sbjct: 1345 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVAENEAETKLQA 1403

Query: 441  RFSN 444
               +
Sbjct: 1404 ILED 1407


>gi|114572697|ref|XP_001172414.1| PREDICTED: glutamyl-prolyl tRNA synthetase isoform 6 [Pan
            troglodytes]
          Length = 1519

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 123/424 (29%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y   P      + +      E  + G      P   S   L  E      +  E+  
Sbjct: 1051 SGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAW 1110

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1111 VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR 1170

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 1171 TREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYE------------------------- 1205

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 1206 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISA---- 1238

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+ G   + G  +S      F+                G   R +  + 
Sbjct: 1239 -------SGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMT 1291

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I             +     C     RL +V   V  D
Sbjct: 1292 MVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLRVNIRVRAD 1351

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +     V ++ R TG +  ++  E       
Sbjct: 1352 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVAENEAETKLQA 1410

Query: 441  RFSN 444
               +
Sbjct: 1411 ILED 1414


>gi|15897489|ref|NP_342094.1| prolyl-tRNA synthetase [Sulfolobus solfataricus P2]
 gi|284174806|ref|ZP_06388775.1| prolyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
 gi|74581610|sp|Q9UWX2|SYP_SULSO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|6015904|emb|CAB57731.1| prolyl (glutamyl) tRNA synthetase [Sulfolobus solfataricus P2]
 gi|13813734|gb|AAK40884.1| Prolyl -tRNA synthetase (proS) [Sulfolobus solfataricus P2]
 gi|261602249|gb|ACX91852.1| prolyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
          Length = 481

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 91/437 (20%), Positives = 150/437 (34%), Gaps = 74/437 (16%)

Query: 27  LRTGMIHQHS----KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV- 81
           LR G  + +     KG+  W+P G K   N+  IIR   + TG  E+  P L   DL   
Sbjct: 20  LREGEFYDYGRYPIKGMGVWMPYGFKLRQNIIGIIRNFLDSTGHEEVLFPLLIPEDLLRR 79

Query: 82  ESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           ES     + +E+  +        D  +   PT E  +T +    +KSY+ LP  +YQI  
Sbjct: 80  ESTHIKGFEEEVFWVTKGGSTDLDVKLALRPTSEVAITTMENLWLKSYKQLPKKYYQIVS 139

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            FR E +           +     +          +Y+                      
Sbjct: 140 VFRYETKATRP------MIRLREITTFKEAHTVHETYDDAQKQVEEAIEIYKKIF----- 188

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           ++  I                  V   +   D    + +T   D I  +           
Sbjct: 189 DTLTIP----------------YVLSERPEWDRFAGALHTYAFDTIMPDG---------- 222

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                                 R +++G + + G  +S  +    +  DG   Y    SY
Sbjct: 223 ----------------------RAMQIGTVHHLGQNFSKALDFKIQKKDGSLDYPHQTSY 260

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYARLS 373
           GI + R VA+VI    D  G + P SVAP K+ +I I A ++           +I    +
Sbjct: 261 GI-SDRAVASVIAIHGDDHGPVLPPSVAPIKVVVIPIPAKNEEETQQVMKYSIEICEMFN 319

Query: 374 KVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           K       D D  +  G +F + ++ G P+++ +G + +    V IK R       +  E
Sbjct: 320 KNNITCLTDQDTEKTPGEKFYIWEIKGVPIRLEIGPRELISGTVFIKRRDNFKSYTVRKE 379

Query: 433 EVINYASHRFSNNRPVL 449
           E IN      +  +  L
Sbjct: 380 EAINKIKELLNEIQEDL 396


>gi|315639668|ref|ZP_07894808.1| proline--tRNA ligase [Enterococcus italicus DSM 15952]
 gi|315484629|gb|EFU75085.1| proline--tRNA ligase [Enterococcus italicus DSM 15952]
          Length = 478

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/413 (16%), Positives = 148/413 (35%), Gaps = 68/413 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  +++     +     G      P L     +  E+   + +  E+  +
Sbjct: 29  GSIIFRPDGFELWEHIQEEFNKFLKTQGIRNAYFPMLIPKSFFMKEADHIEGFAPELPWV 88

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
            +    + ++ +   PT E ++   F   I SYR+LP+   Q    FR E +     +R+
Sbjct: 89  TEVGDEKLEEPLALRPTSETMIGSAFSDWIHSYRDLPYEINQWANVFRWEKK-TLPFLRT 147

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++     E ++     +   Y R                      L  EF+ 
Sbjct: 148 SEFLWQEGHTAHADEEDARRRTMSILDEYAR----------------------LCEEFLA 185

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                             +  E++              +     
Sbjct: 186 --------------------------IPVYKGQKTPSERFAG-----------AVDTYSI 208

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   Y GTK++     T+   + K       S+G+ + R++ ++I + 
Sbjct: 209 EAMMKDGKAVQAGTSHYMGTKFAEAFDITYLTKENKHVAAHTTSWGV-STRLLGSLIMTH 267

Query: 333 HDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            D  G+++P +VAP ++ L+ +     +    +  +KI+  L   G  V  DD     G 
Sbjct: 268 GDENGLVFPPTVAPTQVVLLPVGPWKKNPAILEKLDKIFQELKAKGIRVRLDDSENSPGY 327

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +F   +L G  +++  G + + +  V  K R    +  ++ +E++ Y   + +
Sbjct: 328 KFHEWELKGACIRIECGPRDLENGHVMAKVRDVDGKVTVAFDELLAYIDEQLA 380


>gi|319653797|ref|ZP_08007892.1| prolyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317394523|gb|EFV75266.1| prolyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 479

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 58/415 (13%), Positives = 126/415 (30%), Gaps = 60/415 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  ++ P G +  +++   +      TG      P L     +  E    + +  E+  +
Sbjct: 30  GCIAFKPDGYEIWEHIQEEMDRRFKETGHRNAYFPMLIPESFFQKEKDHIEGFSPELPWI 89

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            +                                           E       +R     
Sbjct: 90  TEAAG----------------------------------------EKLEERLALRPTSET 109

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           M      D               + +  + +  L  I     +        H   V  + 
Sbjct: 110 MIGHLYSDWIKSYRDLPVLINQWANVFRWEKKTLPFIR----TSEFLWQEGHTAHVDEED 165

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +           +              +  E++              +     E   
Sbjct: 166 ARKETMQMLSIYKEVVEGLLA-IPVYDGQKTPSERFAG-----------AVDTFSIEAMM 213

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   Y GTK++      +   + K  +V   S+G  + R++ +VI    D +
Sbjct: 214 KDGKAVQAGTSHYLGTKFAEAFDIKYLNKENKHTFVHTTSWGT-STRLIGSVIMVHGDEQ 272

Query: 337 GIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           G++ P  +AP ++ LI +     +    +  ++I+A L   G  V  DD  +  G +F  
Sbjct: 273 GLVLPPKIAPTQVVLIPVGPWKKNPAIMEKLDEIFAALKAEGIRVRLDDSDQSPGYKFNE 332

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +L G P+++ +G + +  ++  +K R  G +  + LE +I+         +  L
Sbjct: 333 WELKGVPVRIELGPRDLDQNQCLMKARDLGDKVAVPLEAIIDSIKKELETMQNRL 387


>gi|242774039|ref|XP_002478362.1| threonyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
 gi|218721981|gb|EED21399.1| threonyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
          Length = 532

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 137/438 (31%), Gaps = 72/438 (16%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
            D  +      L T     +S G   +LP G   ++ +   +R +  + G  E+  P + 
Sbjct: 77  ADHRVLGTAQELFT--SSSYSPGSPLFLPNGTHIINKLIGFLRAQYRQYGFREVLTPNIY 134

Query: 76  SADLWVESGRYDSYGKEMLRLADR-----------NDKAMIYGPTHEEVMTDIFRSHIKS 124
              LW  SG + +Y  +M  +  R            D+     P +      +F+S   S
Sbjct: 135 KKSLWEISGHWQNYKDDMYEVRGRGATGETEGELGEDEQYGLKPMNCPGHCLLFKSQNHS 194

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YR+LP  +       R+E+     G+ R R F   D + F    +  K   +        
Sbjct: 195 YRDLPVRYADFSPLHRNEISGSLSGLTRVRRFHQDDGHIFCRPQQIGKE-IDLALAFVNM 253

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    GL    +   + P                E     S +  D          +   
Sbjct: 254 VMKTFGLPKYTLVLSTRP----------------EKDFIGSLELWD----------NKSG 287

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSAT 301
               + E   A Y    D+   +L DS  +  ++S   +++     F    + +      
Sbjct: 288 LPWELNEGDGAFYGPKIDI---QLQDSDGKYHQLSTIQLDLNLPQRFELEYQVAEGEPDY 344

Query: 302 FKGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                GK   V +     G+  R +A +IE                          +D+ 
Sbjct: 345 NPNTPGKATPVLIHRAIFGSLERFLAILIELYAGRWPFWLSPRQGIILTVQ-----NDEP 399

Query: 361 CRDACEKIYARLSK-VGCDVF-------------------WDDMGEQIGSQFAVADLLGF 400
                E+  A++S     DV                     D     +  +   A  + +
Sbjct: 400 VLRLAEEAAAKISGYRSIDVEATELLQPAPIASDPTFLIDVDSSSRSLSKKIQRAKSMKY 459

Query: 401 PLQVIVGSKFVSDSKVEI 418
            L  +VGSK ++D+ +++
Sbjct: 460 NLIFVVGSKNLADNSIDV 477


>gi|222479210|ref|YP_002565447.1| prolyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
 gi|259511600|sp|B9LUM0|SYP_HALLT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|222452112|gb|ACM56377.1| prolyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
          Length = 491

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 133/419 (31%), Gaps = 68/419 (16%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKE 92
           +   G     P      + +   +  +   TG      P       L  E    + +  E
Sbjct: 37  EGMSGFIVTRPRAYAVWERLQGFLDAKFKDTGVQNAYFPLFIPESYLEREKDIVEGFDPE 96

Query: 93  MLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  + +  +K +       PT E ++T      ++S+R+LP    Q     R E      
Sbjct: 97  VAWVTEAGNKELEERLAVRPTSESIITPYISQWVRSHRDLPLRVNQWCSVVRWEATETKP 156

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R++EFL                                          +     + + 
Sbjct: 157 FFRTKEFL-------------------------------------WQEGHTAHATHEGAW 179

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E        +      +D +  P+            L            A +    E L 
Sbjct: 180 E--ETMTRLDQYASVYEDLLAMPV------------LKGQKPDHDKFPGAETTTTVEALM 225

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
              P+ K      ++ G   + G  ++     TF   D ++      S+G+ + R + A+
Sbjct: 226 ---PDGK-----SVQAGTSHHLGQSFAEAFDITFSDEDEEERIAHTTSWGL-SWRALGAL 276

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGE 386
           I +  D +G++ P  VAP ++ ++ I   D      +  E +   L   G  V  DD   
Sbjct: 277 IMTHSDEQGLVLPPGVAPEQVVVVPIWQEDTKDEVLEYAEGVADDLDDAGIRVELDDRDG 336

Query: 387 Q-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  G +F   +L G PL++ +G   V D ++ + HR  G       E V+      F  
Sbjct: 337 RNPGFKFNEHELNGVPLRIEIGPHEVEDGELTLVHRPDGESVVEDREGVVATVQDHFDE 395


>gi|150007636|ref|YP_001302379.1| prolyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|262381848|ref|ZP_06074986.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|301310397|ref|ZP_07216336.1| proline--tRNA ligase [Bacteroides sp. 20_3]
 gi|166980137|sp|A6LAP3|SYP_PARD8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|149936060|gb|ABR42757.1| prolyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|262297025|gb|EEY84955.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|300831971|gb|EFK62602.1| proline--tRNA ligase [Bacteroides sp. 20_3]
          Length = 493

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 144/419 (34%), Gaps = 62/419 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +  I+ +    TG +    P L     L  E+   + + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQRILDDMFKETGHVNAYFPLLIPKSFLSKEAEHVEGFAKECAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +   N   T   +    + E              
Sbjct: 96  TH-----------------------YRLKTNHDGTGVVVDPAAKLE-------------- 118

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----- 211
            ++      +     ++Y     SY  +       +  MR E        + EF+     
Sbjct: 119 -EELIIRPTSETIIWNTYRNWIQSYRDLPILCNQWANVMRWEMRTRLFLRTAEFLWQEGH 177

Query: 212 -VLADTGETQVFCSKDFMDFPIPSENTD-FDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              A   E ++   K    +   +EN      I  + S  E++              L  
Sbjct: 178 TAHATREEAEIEAKKMQDVYANFAENYMAMPVIKGVKSESERFAG-----------ALDT 226

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E      + ++ G   + G  +      TF   +GK  Y    S+G+ + R++ A+I
Sbjct: 227 YTIEAMMQDGKALQAGTSHFLGQNFGKAFDVTFIDKNGKSDYAWATSWGV-STRLIGALI 285

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-G 385
            S  D  G++ P  +AP ++ ++ I    +      EK+    A+L  +G  V +DD   
Sbjct: 286 MSHSDDNGLVLPPHLAPIQVVIVPIYRSAEQLTQISEKVAGIVAKLKALGISVKYDDADN 345

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G +FA  +L G P+++ +G + + ++ +E+  R T  +E ++ + +  Y  +    
Sbjct: 346 KKPGWKFAEYELKGVPVRLAMGGRDLENNTIEVMRRDTLEKETITCDGIEEYVKNLLEE 404


>gi|195441810|ref|XP_002068665.1| GK18335 [Drosophila willistoni]
 gi|298206800|ref|YP_003714979.1| prolyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
 gi|83849432|gb|EAP87300.1| prolyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
 gi|194164750|gb|EDW79651.1| GK18335 [Drosophila willistoni]
          Length = 492

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 66/416 (15%), Positives = 132/416 (31%), Gaps = 45/416 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G     P G    + + A + +    TG      P      L+      +    E     
Sbjct: 33  GCMVIKPYGYAIWEKMQAQLDKRFKETGHQNAYFPLFVPKSLFEA----EEKNAEGFAKE 88

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
                              I     K    L        + +           +      
Sbjct: 89  CAVVTHYRLKTDENNPGKLIVDPEAKLEEELVVRPTSEAIIWN--------TYKGW---- 136

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
               S+   P       N +             + +     +     +       LA+T 
Sbjct: 137 --IQSYRDLPLLINQWANVVRWEMRTRLFLRTAEFLWQEGHTAHATREE-----ALAETE 189

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           +     ++   +F           I    +  E++              +     E    
Sbjct: 190 QMNNIYAEFVENFMA------IPVIKGAKTESERFAG-----------AVETYCIEALMQ 232

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + ++ G   + G  ++      F   +GK  YV   S+G+ + R++ A+I +  D KG
Sbjct: 233 DGKALQAGTSHFLGQNFAEAFDVKFTSKEGKQEYVWASSWGV-STRLMGALIMTHSDDKG 291

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDMG-EQIGSQFA 393
           ++ P ++AP ++ ++ I  +D+      E+   +   L  VG  V +D     + G +FA
Sbjct: 292 LVLPPNLAPIQVVIVPIYRNDEQFNAISEEAKLLTEELRAVGISVKFDGRDTHKPGWKFA 351

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             +L G PL++ +G K + +  VE+  R T  +E +  E+V+  A    +  +  L
Sbjct: 352 QYELQGVPLRIAIGPKDLENGTVELARRDTLTKEFVKREDVVAKAKGLMTEIQDTL 407


>gi|301613126|ref|XP_002936064.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase isoform 2 [Xenopus
            (Silurana) tropicalis]
          Length = 1553

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/450 (15%), Positives = 135/450 (30%), Gaps = 77/450 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +     +++ ++ MI  +   G Y   P      + +     +E  + G    
Sbjct: 1058 EAKKEENLPDWYSQVITKSEMIEYYDVSGCYVLRPWAFAIWEAIKEFFDKEIKKLGVENC 1117

Query: 70   SVPTLQS-ADLWVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKS 124
              P   S A L  E      +  E+  +       +       PT E VM   +   ++S
Sbjct: 1118 YFPMFVSQAALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1177

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ ++   T       Y +     L+I
Sbjct: 1178 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFAT-------YEEAAEEVLQI 1230

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                      + A     G     E                                   
Sbjct: 1231 LDLYARVYEDLLAIPVVKGRKTEKEKFA-------------------------------- 1258

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       Y  T +                S+R I+     + G  +S      F+ 
Sbjct: 1259 --------GGDYTTTVEAFISA-----------SSRAIQGATSHHLGQNFSKMFEIVFED 1299

Query: 305  ADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------A 356
                           G + R + A+     D  G++ P  VA  ++ +I           
Sbjct: 1300 PKTPGLKQYAYQNSWGLSTRTIGAMTMVHADNIGMVLPPRVACVQVIIIPCGITNTLSEE 1359

Query: 357  HDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                    C++   RL  V      D       G +F   +L G P+++ VG + + + +
Sbjct: 1360 DKDALLKKCDQYLKRLLNVDVRARADVRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNKQ 1419

Query: 416  -VEIKHRLTGIREDMSLEEVINYASHRFSN 444
             V ++ R  G ++ +S ++           
Sbjct: 1420 FVAVR-RDNGEKQTISEDQAETRLKEILEE 1448


>gi|164656383|ref|XP_001729319.1| hypothetical protein MGL_3354 [Malassezia globosa CBS 7966]
 gi|159103210|gb|EDP42105.1| hypothetical protein MGL_3354 [Malassezia globosa CBS 7966]
          Length = 723

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/433 (16%), Positives = 138/433 (31%), Gaps = 82/433 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
            G Y   P      +++      E  + G    S P   S+D+   E    + +  E+  
Sbjct: 243 SGCYILKPWSYYVWESIQRFFDAEIKKIGVQNCSFPMFVSSDVLEREKDHVEGFAPEVAW 302

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 303 VTKAGKSDLEKPVAIRPTSETVMYPYYAKWIQSHRDLPLRLNQWNSVVRWEFKHPQPFLR 362

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  L     K   ++     L ++ R+                       
Sbjct: 363 TREFLWQEGHTAHL----HKEQADEEVRYILDLYRRVY---------------------- 396

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                  E      +  + S  E++      T       +   +
Sbjct: 397 ----------------------EELLALPVVPGVKSEKEKFAGGLYTT------TVEGYV 428

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM--------R 323
           P     + RG++ G     G  +S     T +     D         +           R
Sbjct: 429 P----TTGRGVQGGTSHSLGQNFSRMFDITVQDPKATDETRGKPEGRLFVWQNSWGLSTR 484

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVG 376
            +  ++    D KG++ P  V+  ++ L+                   C+ +  +L   G
Sbjct: 485 TIGVMVMVHGDDKGLVMPPRVSQVQVVLVPCGLGVKVSQDVKDAVNKTCDDVAEQLRTRG 544

Query: 377 CDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM---SLE 432
                D       G +F   +L G PL++ VG K +S+  +    R TG +E +   SL+
Sbjct: 545 IRAHADLRDNYNPGFKFNDWELRGVPLRLEVGPKDLSNQSLIAVRRDTGAKESLALNSLD 604

Query: 433 EVINYASHRFSNN 445
           + +     +  N+
Sbjct: 605 QSVPMLLDQIHND 617


>gi|154309169|ref|XP_001553919.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
 gi|150852522|gb|EDN27714.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
          Length = 588

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 139/443 (31%), Gaps = 78/443 (17%)

Query: 27  LRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVES 83
           L+  MI  ++   G +   P      + +    + +       E S P  L S  L  E 
Sbjct: 73  LKAEMIEYYNEISGFFILRPQSMFIWNQIRNWFQAKIETLDVEEASFPMFLSSKSLEKEK 132

Query: 84  GRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +    DK +       PT E VM   +   I+S+R+LP    Q     
Sbjct: 133 DHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLRLNQWNSVV 192

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  LT   +     ++   Y  ++              
Sbjct: 193 RWEAKQTTPFLRAREFLWQEGHTAHLTEALAGEEVLQILEFYAGVYE------------- 239

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                              E      +    +  E++   Y  T
Sbjct: 240 -----------------------------------ELLAVPVVRGRKTEKEKFAGGYYTT 264

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  +   +P N     RGI+       G  +S     T +    K+       +  
Sbjct: 265 ------TVEGYIPSNG----RGIQGATSHCLGQNFSKMFDITVEDPTPKNGEKAGHLHVW 314

Query: 320 GA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK------ 367
                   RV+  ++    D KG++ P  +A  +  ++ +   +     +  ++      
Sbjct: 315 QNSWGLSTRVIGVMVMIHGDDKGLVLPPRIAKLQAIIVPVGITNKTTPEEKAKRYDELQN 374

Query: 368 IYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           I   L K G    +D         +F   +L G PL++  G +  +   V    R TG +
Sbjct: 375 IKDTLKKSGVRADYDIRDGYTPAWKFNDWELKGVPLRLEYGPRDAAQGVVSYARRDTGEK 434

Query: 427 EDMSLEEVINYASHRFSNNRPVL 449
             +++  +           +  L
Sbjct: 435 GTIAIANLSTEVPALLETIQSSL 457


>gi|154499081|ref|ZP_02037459.1| hypothetical protein BACCAP_03073 [Bacteroides capillosus ATCC
           29799]
 gi|150271921|gb|EDM99147.1| hypothetical protein BACCAP_03073 [Bacteroides capillosus ATCC
           29799]
          Length = 497

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 66/408 (16%), Positives = 133/408 (32%), Gaps = 58/408 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G++ + P G    +N+   +      TG   +S+P L    L   E    + +  E    
Sbjct: 57  GMFIYRPYGYAIWENIQKELDARFKATGHENVSLPMLIPESLLQKEKDHVEGFAPEC--- 113

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                             +  M   E L
Sbjct: 114 -------------------------------------------------AWVTMGGSEKL 124

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +       +       Y  +  S+  +          +R E          EF+     
Sbjct: 125 EERYCIRPTSETLFCEHYKNIIHSWRDLPKLYNQWCSVLRWEKTSRPFLRHREFLWQEGH 184

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                          + +   DF + +    +V+          +  N        E   
Sbjct: 185 TMHATEEEAREETKRMLNIYADFLENVLAMPVVKGRK----TDKEKFNGAEETYTVECMM 240

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   YFG  ++     TF G D + H+    S+G+ + R++  +I +  D  
Sbjct: 241 HDKKALQAGTSHYFGDGFAKAFDITFTGKDNQLHHPHQTSWGV-STRMIGGLIMTHGDNN 299

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G++ P  +AP ++ +I +  H     +A + +  RL K G  V  DD  +  G +FA  +
Sbjct: 300 GLVLPPRIAPIQVIIIPVAQHKPGVIEANQAVMDRLIKAGFRVKMDDSDQSAGWKFAEYE 359

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + G PL++ +G K +  ++  +  R +G +  +SL+ +    +    +
Sbjct: 360 MKGVPLRLELGPKDIEKNQCVLARRDSGEKSFVSLDGIEETVAAMLDS 407


>gi|114559275|ref|XP_001168898.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 7 [Pan
           troglodytes]
          Length = 636

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 124/407 (30%), Gaps = 55/407 (13%)

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKA 103
           E    G  E+  PTL S  LW +SG ++ Y ++M                          
Sbjct: 260 EYAHRGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDT 319

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYS 162
           +   P +      +F    +S+R LP          R E      G+ R R F   DA+ 
Sbjct: 320 LALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHI 379

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           F  T +               ++  LG         + P G                   
Sbjct: 380 FCTTDQLEAE-IQSCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------L 420

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                 D           +      +     A Y    DVH   L D+L    +     +
Sbjct: 421 GDPCLWDQAEQVLKQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQL 477

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +    F    ++       +KG  G       +    +G++  +  V+    +  G  WP
Sbjct: 478 D----FQLPLRFD----LQYKGQAGALERPVLIHRAVLGSVERLLGVLA---ESCGGKWP 526

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGF 400
             ++PF++ +I + +  +   +  ++    L   G     D D G  +  +   A L  +
Sbjct: 527 LWLSPFQVVVIPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHY 583

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
             Q +VG K  S   V I+ R      +  L E +       +   P
Sbjct: 584 NFQFVVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVELQNTRVP 630


>gi|114559285|ref|XP_001168667.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 1 [Pan
           troglodytes]
 gi|55958998|emb|CAI15490.1| threonyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
          Length = 443

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 124/407 (30%), Gaps = 55/407 (13%)

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKA 103
           E    G  E+  PTL S  LW +SG ++ Y ++M                          
Sbjct: 67  EYAHRGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDT 126

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYS 162
           +   P +      +F    +S+R LP          R E      G+ R R F   DA+ 
Sbjct: 127 LALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHI 186

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           F  T +               ++  LG         + P G                   
Sbjct: 187 FCTTDQLEAE-IQSCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------L 227

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                 D           +      +     A Y    DVH   L D+L    +     +
Sbjct: 228 GDPCLWDQAEQVLKQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQL 284

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +    F    ++       +KG  G       +    +G++  +  V+    +  G  WP
Sbjct: 285 D----FQLPLRFD----LQYKGQAGALERPVLIHRAVLGSVERLLGVLA---ESCGGKWP 333

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGF 400
             ++PF++ +I + +  +   +  ++    L   G     D D G  +  +   A L  +
Sbjct: 334 LWLSPFQVVVIPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHY 390

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
             Q +VG K  S   V I+ R      +  L E +       +   P
Sbjct: 391 NFQFVVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVELQNTRVP 437


>gi|31958|emb|CAA38224.1| glutaminyl-tRNA synthetase [Homo sapiens]
 gi|45643460|gb|AAS72877.1| proliferation-inducing protein 32 [Homo sapiens]
          Length = 1440

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 122/424 (28%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y   P      + +      E  + G      P   S   L  E      +  E+  
Sbjct: 972  SGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAW 1031

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1032 VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR 1091

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 1092 TREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYE------------------------- 1126

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 1127 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISA---- 1159

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+ G   + G  +S      F+                G   R +  + 
Sbjct: 1160 -------SGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMT 1212

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I             +     C     RL  V   V  D
Sbjct: 1213 MVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRAD 1272

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +     V ++ R TG +  ++  E       
Sbjct: 1273 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVAENEAETKLQA 1331

Query: 441  RFSN 444
               +
Sbjct: 1332 ILED 1335


>gi|114572701|ref|XP_001172372.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 1434

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 123/424 (29%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y   P      + +      E  + G      P   S   L  E      +  E+  
Sbjct: 966  SGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAW 1025

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1026 VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR 1085

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 1086 TREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYE------------------------- 1120

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 1121 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISA---- 1153

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+ G   + G  +S      F+                G   R +  + 
Sbjct: 1154 -------SGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMT 1206

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I             +     C     RL +V   V  D
Sbjct: 1207 MVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLRVNIRVRAD 1266

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +     V ++ R TG +  ++  E       
Sbjct: 1267 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVAENEAETKLQA 1325

Query: 441  RFSN 444
               +
Sbjct: 1326 ILED 1329


>gi|38537103|gb|AAR23527.1| threonyl-tRNA synthetase [Homo sapiens]
          Length = 443

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 124/407 (30%), Gaps = 55/407 (13%)

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML----------------RLADRNDKA 103
           E    G  E+  PTL S  LW +SG ++ Y ++M                          
Sbjct: 67  EYAHRGFSEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPPSSQSDDSTRHITDT 126

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYS 162
           +   P +      +F    +S+R LP          R E      G+ R R F   DA+ 
Sbjct: 127 LALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHI 186

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           F  T +               ++  LG         + P G                   
Sbjct: 187 FCTTDQLEAE-IQSCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------L 227

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                 D           +      +     A Y    DVH   L D+L    +     +
Sbjct: 228 GDPCLWDQAEQVLKQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQL 284

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +    F    ++       +KG  G       +    +G++  +  V+    +  G  WP
Sbjct: 285 D----FQLPLRFD----LQYKGQAGALERPVLIHRAVLGSVERLLGVLA---ESCGGKWP 333

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGF 400
             ++PF++ +I + +  +   +  ++    L   G     D D G  +  +   A L  +
Sbjct: 334 LWLSPFQVVVIPVGSEQE---EYAKEARQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHY 390

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
             Q +VG K  S   V I+ R      +  L E +       +   P
Sbjct: 391 NFQFVVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVELQNTRVP 437


>gi|169828364|ref|YP_001698522.1| prolyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|168992852|gb|ACA40392.1| Prolyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
          Length = 483

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 75/413 (18%), Positives = 150/413 (36%), Gaps = 70/413 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  ++ P G +  +++   +      TG      P L     +  E    + +  E+  +
Sbjct: 34  GCIAFKPDGYEIWEHIQEEMDRRFKDTGHRNAYFPMLIPESFFQKEKDHIEGFSPELPWV 93

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                ++ ++ +   PT E ++  ++ + IKSYR+LP    Q    FR E +     +R+
Sbjct: 94  TEAAGEKLEERLALRPTSETMIGHLYSNWIKSYRDLPVLINQWANVFRWEKK-TLPFIRT 152

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++  +  E ++    +M   Y  +                            
Sbjct: 153 SEFLWQEGHTAHIDEEDARKETMQMLDIYKEVVE-------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSEN-TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  QV     +     PSE      D  S+ ++++   A  A TS     K  ++ 
Sbjct: 187 -------QVLAIPVYDGQKTPSERFAGAVDTYSIEAMMKNGKAVQAGTSHYLGTKFAEAF 239

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                  A   E  H   +GT                            + R++ +VI  
Sbjct: 240 NIKYLNKANQHEYVHTTSWGT----------------------------STRLIGSVIMV 271

Query: 332 SHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
             D +G+I P  +AP ++ LI +     +    +  + I+A L   G  V  DD  +  G
Sbjct: 272 HGDEQGLILPPRIAPTQVVLIPVGPWKKNPQIMEQLDAIFAALKAKGIRVRLDDSDQSPG 331

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +F   +L G P+++ +G + + +++  +K R    ++ + L  V+       
Sbjct: 332 FKFNEWELKGVPVRIELGPRDLENNQALLKARDEDEKQTIELATVVAAIEEEL 384


>gi|86141210|ref|ZP_01059756.1| prolyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
 gi|85831769|gb|EAQ50224.1| prolyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
          Length = 490

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 62/417 (14%), Positives = 132/417 (31%), Gaps = 49/417 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG      P       +  E+   D + KE    
Sbjct: 33  GCMVIKPYGYAIWEKMQAELDRMFKETGHENAYFPLFIPKSYFSKEASHVDGFAKE---- 88

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                               +   +              + K  +EL  R          
Sbjct: 89  ------------------CAVVTHYRLKNDEDGSIIVDPEAKLEEELIVRP--------- 121

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +      +Y K   SY  +  ++   +  +R E        + EF+     
Sbjct: 122 --------TSETIIWDTYRKWIQSYRDLPIKVNQWANVVRWEMRTRLFLRTAEFL--WQE 171

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T      + +            D       +         +       L     E   
Sbjct: 172 GHTAHATKDEAIAEAEQMMRVYA-DFAEHFMALPVVRGTKTESERFAG-ALETYCIEALM 229

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++      F   +G   +V   S+G+ + R++ A++ +  D  
Sbjct: 230 QDGKALQAGTSHFLGQNFAKAFDVKFATKEGGQEHVWATSWGV-STRLMGALVMTHSDDN 288

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVGCDVFWDDMG-EQIGSQF 392
           G++ P  +AP ++ ++ I   ++         +++   L  +G  V +DD    + G +F
Sbjct: 289 GLVLPPKLAPIQVVIVPIYKGEEQLDSISQVAKELKRELQLLGISVKFDDRDTHKPGWKF 348

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
              +L G PL++ +G + +    VE+  R T  +E +S +++++         +  L
Sbjct: 349 NEYELKGVPLRIAIGPRDLEKRTVELARRDTLTKETVSKDDIVSRVQDLLVEMQKSL 405


>gi|315043510|ref|XP_003171131.1| threonyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
 gi|311344920|gb|EFR04123.1| threonyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
          Length = 523

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 141/437 (32%), Gaps = 61/437 (13%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
              D         L T  I  +S G   + P G   L+ + + +R +  + G  E+  P 
Sbjct: 57  ASADHRALGTAQDLFTNSI--YSPGSPLFRPNGTHILNKLISFLRAQYRQYGFREVLTPN 114

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDK-------AMIYGPTHEEVMTDIFRSHIKSYR 126
           +    LW  SG + +Y  +M  +  R D             P +      +F+S   SYR
Sbjct: 115 IYKQSLWEVSGHWQNYKDDMYEVGGRGDTGDSTENETYGLKPMNCPGHCLLFKSQKHSYR 174

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            LP  +       R+E+     G+ R R F   D + F    +               + 
Sbjct: 175 ELPVRYADFSPLHRNEVSGSLSGLTRVRRFHQDDGHIFCRPGQIGSE-IQLALKFADTVL 233

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              GL                    +VL+   E     S +  +          D+    
Sbjct: 234 QTFGLADGYR---------------LVLSTRPEKDFIGSLEQWENAEQQLRQALDNSGLS 278

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             + E   A Y    D+   ++ DS  +  ++S   +++     FG +Y +P  +     
Sbjct: 279 WELNEGDGAFYGPKIDL---QIQDSQGKYHQLSTIQLDMNLPQRFGLEYLVPEGSEEYDP 335

Query: 306 D--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              G+   V +     G++    A++    +     WP  ++P +  L+ +    +    
Sbjct: 336 ATGGRATPVLIHRAIFGSLERFFALLI---ERYNGQWPFWLSPHQAILLTVGKGLE---Q 389

Query: 364 ACEKIYARLSKVGCD----------------------VFWDDMGEQIGSQFAVADLLGFP 401
           A E + A     G +                      V  D     +  +   A    + 
Sbjct: 390 AAEDVVA--KVSGFEPITSTHPSSTGLPLSPLQPTFNVDLDLASRSLPKKIHDAHAARYN 447

Query: 402 LQVIVGSKFVSDSKVEI 418
           L  I+G K +++  V+I
Sbjct: 448 LVFIMGPKNLAEGSVDI 464


>gi|50552312|ref|XP_503566.1| YALI0E05027p [Yarrowia lipolytica]
 gi|49649435|emb|CAG79147.1| YALI0E05027p [Yarrowia lipolytica]
          Length = 517

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 130/422 (30%), Gaps = 72/422 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +      +  + G      P   S+  L  E    + +  E+  
Sbjct: 45  SGCYIMRPPSYFVWEQIQEWFNIKIKKLGVKNAYFPMFVSSRVLEKEKDHVEGFAPEVAW 104

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 105 VTKAGSSDLEEPVAIRPTSETVMYPYYAKWVRSHRDLPLKLNQWNSVVRWEFKHPQPFLR 164

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++                                                H   
Sbjct: 165 TREFLWQEG-----------------------------------------------HTAH 177

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           + A   E +V    D  +  I SE      I    S  E++      T       +   +
Sbjct: 178 LTAKEAEDEVMAILDNYE-KIYSELLAVPVIKGKKSEKEKFAGALFTT------TVEGFI 230

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIE 330
           P     + RGI+       G  +S     + +  +G    +       G + RV+  +  
Sbjct: 231 P----STGRGIQGATSHCLGQNFSKMFDISVEDPNGGADKLFAWQNSWGLSTRVIGVMTM 286

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDD 383
           +  D KG++ P  VA  +  +I                 DA   I   LS+    V  D 
Sbjct: 287 THSDNKGLVLPPRVAHTQAIIIPCGLTAKLAAEKRAAVMDASAAIEKALSEADVRVASDT 346

Query: 384 MG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
                 G +F+ A+L G PL++ VG + V   K+    R  G +  M + ++        
Sbjct: 347 RDTYSPGWKFSDAELRGIPLRIEVGPRDVEQGKIVAVRRDNGEKIVMDIADLATSVPELL 406

Query: 443 SN 444
             
Sbjct: 407 ET 408


>gi|225437777|ref|XP_002281375.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297744088|emb|CBI37058.3| unnamed protein product [Vitis vinifera]
          Length = 516

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 71/423 (16%), Positives = 135/423 (31%), Gaps = 70/423 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ-SADLWVESGRYDSYGKEMLR 95
            G Y   P      + +      E  +        P       L  E    + +  E+  
Sbjct: 64  SGCYILRPWTMAVWETMQTFFDAEIKKMKIKNCYFPLFVSPGVLQKEKDHIEGFAPEVAW 123

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   +   I+ +R+LP    Q     R E       +R
Sbjct: 124 VTKSGQSDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLRLNQWCNVVRWEFSHPTPFIR 183

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T E +     ++   Y RI+                          
Sbjct: 184 SREFLWQEGHTAFATKEEADKEVLEILELYRRIYE------------------------- 218

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      I    S +E++    Y  + +         
Sbjct: 219 -----------------------EYLAIPVIKGKKSEMEKFAGGFYTTSVEAFIPN---- 251

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                  + RGI+       G  ++     TF+   G+   V   S+   + R +  ++ 
Sbjct: 252 -------TGRGIQGATSHCLGQNFAKMFDITFENEKGEKAMVWQNSWAY-STRTIGVMVM 303

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGE- 386
              D KG++ P  VA  +I ++ +   D   Q   DAC+     L++ G     D     
Sbjct: 304 VHGDDKGLVMPPKVASVQIIVVPVPFKDADTQAIFDACDATVNTLNEAGFRAEADLRDNY 363

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             G +++  ++ G PL++ +G K +++ +     R    + D+ +  ++        N +
Sbjct: 364 SPGWKYSHWEMKGVPLRIEIGPKDLANKQARAVRRDNSAKIDIPIVNLVEQVKDMLDNIQ 423

Query: 447 PVL 449
             L
Sbjct: 424 QNL 426


>gi|126651780|ref|ZP_01723982.1| prolyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126591458|gb|EAZ85565.1| prolyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 483

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 150/413 (36%), Gaps = 70/413 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  ++ P G +  +++   +      TG      P L     +  E    + +  E+  +
Sbjct: 34  GCIAFKPDGYEIWEHIQEAMDRRFKDTGHRNAYFPMLIPESFFQKEKDHIEGFSPELPWV 93

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                ++ ++ +   PT E ++  ++ + IKSYR+LP    Q    FR E +     +R+
Sbjct: 94  TEAAGEKLEERLALRPTSETMIGHLYSNWIKSYRDLPVLINQWANVFRWEKK-TLPFIRT 152

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++  +  E ++    +M   Y  +                            
Sbjct: 153 SEFLWQEGHTAHVDEEDARKETMQMLEIYKEVVE-------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSEN-TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  QV     +     PSE      D  S+ ++++   A  A TS     K  ++ 
Sbjct: 187 -------QVLAIPVYDGQKTPSERFAGAVDTYSIEAMMKNGKAVQAGTSHYLGTKFAEAF 239

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                  A   E  H   +GT                            + R++ +VI  
Sbjct: 240 NIKYLNKANQHEYVHTTSWGT----------------------------STRLIGSVIMV 271

Query: 332 SHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
             D +G++ P  +AP ++ LI +     +    +  + I+A L   G  V  DD  +  G
Sbjct: 272 HGDEQGLVLPPRIAPTQVVLIPVGPWKKNPQIMEQLDAIFAALKAKGIRVRLDDSDQSPG 331

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +F   +L G P+++ +G + + +++  +K R    ++ + L  ++       
Sbjct: 332 FKFNEWELKGVPVRIELGPRDLENNQALLKARDEDDKQTIELSTIVAAIEEEL 384


>gi|126306851|ref|XP_001367334.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 1
            [Monodelphis domestica]
          Length = 1591

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/451 (15%), Positives = 135/451 (29%), Gaps = 79/451 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ +  MI  +   G Y   P      + +      E  + G    
Sbjct: 1096 EAKKEENLADWFSQVITKAEMIEYYDVSGCYILRPWAYSIWEAIKDFFDAEIKKLGVENC 1155

Query: 70   SVPTLQSA-DLWVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +       +       PT E VM   +   ++S
Sbjct: 1156 YFPMFVSQGALEKEKTHVADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1215

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T E +     ++   Y R+
Sbjct: 1216 HRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATYEEAAEEVLQILDLYARV 1275

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +                                                 E      +  
Sbjct: 1276 YE------------------------------------------------ELLAIPVVKG 1287

Query: 245  LNSIVEQW-TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +  E++    Y  T +                S R I+     + G  +S      F+
Sbjct: 1288 RKTEKEKFAGGDYTTTVEAFISA-----------SGRAIQGATSHHLGQNFSKMFEIIFE 1336

Query: 304  GADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---- 358
                            G   R +  +     D  G++ P  VA  ++ +I     +    
Sbjct: 1337 DPKTPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVVIPCGITNALSE 1396

Query: 359  ---QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD- 413
               +     C     RL  V   V  D       G +F   +L G P+++ VG + + + 
Sbjct: 1397 EDREALIRKCNDYQKRLLTVNIRVRVDLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNC 1456

Query: 414  SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              V ++ R TG +  ++ +E           
Sbjct: 1457 QFVAVR-RDTGEKLTIAEKEAETKLRDILEE 1486


>gi|296110087|ref|YP_003617036.1| prolyl-tRNA synthetase [Methanocaldococcus infernus ME]
 gi|295434901|gb|ADG14072.1| prolyl-tRNA synthetase [Methanocaldococcus infernus ME]
          Length = 451

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 161/453 (35%), Gaps = 86/453 (18%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M  S+++  IL+     AEI   +  ++         G   +LP G K       I+ + 
Sbjct: 1   MEFSEWYSEILER----AEIYDVRYPIK---------GCGVYLPYGFKIRKYTFEILSKL 47

Query: 61  QNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMT 115
            + +G  ++  P L    L   E      +  E+  +        D  +   PT E  + 
Sbjct: 48  LDESGHEQVLFPLLIPETLLAKEGEHIKGFEDEVYWVTHGGKTPLDVKLALRPTSETAIY 107

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
            + +  +K + +LP   YQI   FR E +    ++R RE                     
Sbjct: 108 YMLKLWVKVHTDLPIKLYQIVNTFRYETKHTRPLIRLREI-------------------- 147

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                                     +    +H      +  E QV          I   
Sbjct: 148 --------------------------MTFKEAHTAHATKEEAEKQV-------KEAIGIY 174

Query: 236 NTDFDDIISLNSIV--EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
              FD +     I+   +W     A   +  + +F   P+      R I++G +   G  
Sbjct: 175 KKFFDTLGIPYLIIKRPEWDKFPGADYTIAFDTIF---PDG-----RAIQIGTVHNLGQH 226

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +S      F+   G   Y     YGI + R +A++I    D KG+  P  VAP ++ +I 
Sbjct: 227 FSKTFEIEFETPTGDKDYAYQTCYGI-SDRAIASIIAIHGDEKGLKLPPVVAPIQVVIIP 285

Query: 354 I--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +  K  +++  +  +++  RL +    V  DD   + G ++   ++ G PL++ +G + +
Sbjct: 286 LIFKGKEEMVINKAKEVAERLKE--YRVHIDDRDIRPGKKYYDWEIKGVPLRIDIGPRDI 343

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + K+ +  R TG +  +   E+         +
Sbjct: 344 EEGKITLVRRDTGEKIVIEESELEEKVRETLED 376


>gi|114572703|ref|XP_001172380.1| PREDICTED: glutamyl-prolyl tRNA synthetase isoform 3 [Pan
            troglodytes]
 gi|114572705|ref|XP_001172392.1| PREDICTED: glutamyl-prolyl tRNA synthetase isoform 4 [Pan
            troglodytes]
 gi|114572707|ref|XP_001172403.1| PREDICTED: glutamyl-prolyl tRNA synthetase isoform 5 [Pan
            troglodytes]
          Length = 1440

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 123/424 (29%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y   P      + +      E  + G      P   S   L  E      +  E+  
Sbjct: 972  SGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAW 1031

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1032 VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR 1091

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 1092 TREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYE------------------------- 1126

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 1127 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISA---- 1159

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+ G   + G  +S      F+                G   R +  + 
Sbjct: 1160 -------SGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMT 1212

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I             +     C     RL +V   V  D
Sbjct: 1213 MVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLRVNIRVRAD 1272

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +     V ++ R TG +  ++  E       
Sbjct: 1273 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVAENEAETKLQA 1331

Query: 441  RFSN 444
               +
Sbjct: 1332 ILED 1335


>gi|257389171|ref|YP_003178944.1| prolyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
 gi|257171478|gb|ACV49237.1| prolyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
          Length = 484

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 134/415 (32%), Gaps = 68/415 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P       L  E    + +  E+  +
Sbjct: 38  GFIVTRPRGYAIWEQIQTHLDGWFKDTGVQNAYFPMFIPESYLEREKDIVEGFDPEVAWV 97

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               ++ +       PT E ++        +S+R+LP    Q     R E        R+
Sbjct: 98  THGGNEELEERLAVRPTSESIIAPFLAQWTRSHRDLPLRINQWCSVVRWEATETKPFFRT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           +EFL ++ ++     +                                    D   E + 
Sbjct: 158 KEFLWQEGHTAHRDED------------------------------------DAWEETMT 181

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             D  E            P+     + D     ++                   +   +P
Sbjct: 182 RLDQYE--KLYEDVLAMPPLKGRKPEHDKFPGAHTTT----------------TVETLMP 223

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           + K      ++     Y GT ++     T+   D ++      S+G+ + R + A+I + 
Sbjct: 224 DGK-----SVQAATSHYLGTSFAEAFDITYVDEDEEEETAHTTSWGL-SWRAMGALIMTH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQ-IG 389
            D +G++ P ++AP ++ ++ I   D      +    + A L + G  V +DD   +  G
Sbjct: 278 SDDQGLVLPPTLAPKQVVVVPIWQEDTKDEVLEYAADVAAELDEAGVRVHFDDRDHRNPG 337

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++   +L G PL+V +G   V D ++ + HR  G     S + +          
Sbjct: 338 FKYNDWELKGVPLRVEIGPNEVEDEELTLSHRPDGESITESRDGLETTVRDHLDE 392


>gi|332884684|gb|EGK04941.1| prolyl-tRNA synthetase [Dysgonomonas mossii DSM 22836]
          Length = 493

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 77/430 (17%), Positives = 159/430 (36%), Gaps = 84/430 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   + +    TG +    P       L  E+   + + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQRQLDDMFKETGHMNAYFPLFIPKSFLSKEADHVEGFAKECAVV 95

Query: 97  AD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                               + ++ +I  PT E ++ + +R+ I+SYR+LP    Q    
Sbjct: 96  THYRLKNDPDGKGVIVDPDAKLEEELIVRPTSETIIWNTYRNWIQSYRDLPILVNQWANV 155

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E+R R  + R+ EFL ++ ++   T E +     KM   Y +               
Sbjct: 156 VRWEMRTRLFL-RTAEFLWQEGHTAHATKEEAVEEAEKMLNVYAQFA------------- 201

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                     E++                              I  + S  E++      
Sbjct: 202 ---------EEYMA--------------------------VPVIKGVKSASERFAG---- 222

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                   +     E      + ++ G   + G  ++      F   +GK  YV   S+G
Sbjct: 223 -------AVDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVKFADKEGKMDYVWATSWG 275

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKV 375
           + + R++ A+I +  D  G++ P  +APF++ ++ I    +      +  + I   L  +
Sbjct: 276 V-STRLIGALIMAHSDDNGLVLPPKLAPFQVVIVPIYKGAEQLALINEKVDGIVKSLKAL 334

Query: 376 GCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +D+   +  G +F+  +L G P+++ +G++ + ++ VE+  R T  +E +S + +
Sbjct: 335 GISVKYDNADNRKPGWKFSEYELKGVPVRLAMGARDMENNTVEVARRDTLTKETVSCDGL 394

Query: 435 INYASHRFSN 444
             Y  +   +
Sbjct: 395 DMYIKNLLDD 404


>gi|57530349|ref|NP_001006398.1| bifunctional aminoacyl-tRNA synthetase [Gallus gallus]
 gi|53133756|emb|CAG32207.1| hypothetical protein RCJMB04_20b9 [Gallus gallus]
          Length = 1601

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 73/450 (16%), Positives = 129/450 (28%), Gaps = 77/450 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ +  MI  +   G Y   P      + +      E  + G    
Sbjct: 1106 EAKKEENLADWFSQVITKAEMIEYYDVSGCYVLRPWAYAIWEAIKNFFDAEIKKLGVENC 1165

Query: 70   SVPTLQS-ADLWVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKS 124
              P   S A L  E      +  E+  +       +       PT E VM   +   ++S
Sbjct: 1166 YFPMFVSQAALEKEKSHIADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQS 1225

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T       Y +     ++I
Sbjct: 1226 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT-------YEEAAEEVMQI 1278

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                      + A     G     E                                   
Sbjct: 1279 LDLYAQVYEDLLAIPVVKGRKTEKEKFA-------------------------------- 1306

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                       Y  T +                S R I+     + G  +S      F+ 
Sbjct: 1307 --------GGDYTTTVEAFISA-----------SGRAIQGATSHHLGQNFSKMFEVMFED 1347

Query: 305  ADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------A 356
                           G   R +  +     D  G++ P  VA  ++ +I           
Sbjct: 1348 PKKPGEKQYAYQNSWGITTRTIGVMTMIHGDNVGLVLPPRVACVQVVIIPCGITNTLSEE 1407

Query: 357  HDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +     C +   RL      V  D       G +F   +L G P+++ VG + +   +
Sbjct: 1408 DKEALLKKCNEYRKRLLSANVRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSQQ 1467

Query: 416  -VEIKHRLTGIREDMSLEEVINYASHRFSN 444
             V ++ R TG +   S  E  +        
Sbjct: 1468 FVAVR-RDTGQKLTFSEHEAEDKLKQVLEE 1496


>gi|327405532|ref|YP_004346370.1| prolyl-tRNA synthetase [Fluviicola taffensis DSM 16823]
 gi|327321040|gb|AEA45532.1| prolyl-tRNA synthetase [Fluviicola taffensis DSM 16823]
          Length = 491

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 79/432 (18%), Positives = 157/432 (36%), Gaps = 88/432 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G+    P G    +N+  I+  +   TG      P L     L  E+   + + KE   +
Sbjct: 33  GMMVIKPYGYAIWENMRDILDAKFKETGHQNAYFPLLIPKSYLSKEASHIEGFAKECAVV 92

Query: 97  AD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                               + ++ +I  PT E ++ + ++  I+SYR+LP    Q    
Sbjct: 93  THYRLMSDPNGGGVIVDPSAKLEEELIVRPTSETIIWNSYKKWIQSYRDLPILINQWANV 152

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E++ R   +R+ EFL                                          
Sbjct: 153 VRWEMKTRL-FLRTSEFL------------------------------------------ 169

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF--DDIISLNSIVEQWTAPY 256
                     E      T E  +  ++  +D       T      I    +  E++    
Sbjct: 170 --------WQEGHTAHATKEEAIKETEQMLDVYAEFAETYMAMPVIKGHKTESERFAG-- 219

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                           E+     + ++ G   + G  ++      +  A GK  YV   S
Sbjct: 220 ---------ADDTYCIESMMQDGKALQAGTSHFLGQNFAKAFDVKYSDAQGKLEYVWATS 270

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLS 373
           +G+ + R++ A+I +  D +G++ P ++AP ++ ++ I   D+      DA  KI A L 
Sbjct: 271 WGV-STRLMGALIMTHSDDEGLVLPPALAPIQVVIVPIYRTDEELQLINDAVAKITAELK 329

Query: 374 KVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +   V +D D  ++ G +FA  +  G P+++ +G + +++  VEI  R T  +  M+++
Sbjct: 330 DLKVKVKYDSDDQKRPGWKFAEHEAKGVPVRLAIGPRDLANGVVEIARRDTKEKYAMNID 389

Query: 433 EVINYASHRFSN 444
            + +      ++
Sbjct: 390 NIGHSIVELLAD 401


>gi|74006042|ref|XP_536120.2| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 1
            [Canis familiaris]
          Length = 1534

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 128/426 (30%), Gaps = 55/426 (12%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
             G Y   P      +++      E  + G      P   S   L  E      +  E+  
Sbjct: 1041 SGCYILRPWAYSIWESIKDFFDAEIKKLGVENCYFPMFVSQGALEKEKTHVADFAPEVAW 1100

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1101 VTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLR 1160

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 1161 TREFLWQEGHSAFATFEEAAEEVLQILDLYAKVYE------------------------- 1195

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS- 270
                    ++             E     D  +    +E + +       V  + L  S 
Sbjct: 1196 --------ELLAIPVVKGRKTEKEKFAGGDYTT---TIEAFISASGRAIQVPQQVLGGSH 1244

Query: 271  --LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAA 327
               P+   +     +     + G  +S      F+                G   R +  
Sbjct: 1245 AGSPKWDSIPGLQDQGATSHHLGQNFSKMFEIIFEDPKTPGEKQFAYQNSWGLTTRTIGV 1304

Query: 328  VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVF 380
            +     D  G++ P  VA  ++ +I     + +  +        C     RL  V   V 
Sbjct: 1305 MTMVHGDNMGLVLPPRVASVQVVVIPCGITNALSEEDRDALIIKCNDYRRRLLSVNVRVK 1364

Query: 381  WDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYA 438
             D       G +F   +L G P+++ VG + +     V ++ R TG +  ++  E     
Sbjct: 1365 VDLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVADNEAETKL 1423

Query: 439  SHRFSN 444
                 +
Sbjct: 1424 KAILED 1429


>gi|126306853|ref|XP_001367377.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 2
            [Monodelphis domestica]
          Length = 1511

 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 72/451 (15%), Positives = 135/451 (29%), Gaps = 79/451 (17%)

Query: 13   ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            E  ++  +A    +++ +  MI  +   G Y   P      + +      E  + G    
Sbjct: 1016 EAKKEENLADWFSQVITKAEMIEYYDVSGCYILRPWAYSIWEAIKDFFDAEIKKLGVENC 1075

Query: 70   SVPTLQSA-DLWVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKS 124
              P   S   L  E      +  E+  +       +       PT E VM   +   ++S
Sbjct: 1076 YFPMFVSQGALEKEKTHVADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 1135

Query: 125  YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            +R+LP    Q     R E +     +R+REFL ++ +S   T E +     ++   Y R+
Sbjct: 1136 HRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATYEEAAEEVLQILDLYARV 1195

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +                                                 E      +  
Sbjct: 1196 YE------------------------------------------------ELLAIPVVKG 1207

Query: 245  LNSIVEQW-TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +  E++    Y  T +                S R I+     + G  +S      F+
Sbjct: 1208 RKTEKEKFAGGDYTTTVEAFISA-----------SGRAIQGATSHHLGQNFSKMFEIIFE 1256

Query: 304  GADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---- 358
                            G   R +  +     D  G++ P  VA  ++ +I     +    
Sbjct: 1257 DPKTPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVVIPCGITNALSE 1316

Query: 359  ---QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD- 413
               +     C     RL  V   V  D       G +F   +L G P+++ VG + + + 
Sbjct: 1317 EDREALIRKCNDYQKRLLTVNIRVRVDLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNC 1376

Query: 414  SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              V ++ R TG +  ++ +E           
Sbjct: 1377 QFVAVR-RDTGEKLTIAEKEAETKLRDILEE 1406


>gi|148655910|ref|YP_001276115.1| prolyl-tRNA synthetase [Roseiflexus sp. RS-1]
 gi|166980153|sp|A5UU62|SYP_ROSS1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|148568020|gb|ABQ90165.1| prolyl-tRNA synthetase [Roseiflexus sp. RS-1]
          Length = 480

 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 69/428 (16%), Positives = 138/428 (32%), Gaps = 73/428 (17%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKE 92
           +  KG   + P G    + +   + +    TG +    P L     L  E+   + +  E
Sbjct: 31  EVVKGCIVFKPTGYAIWEAIQRGLDDRIKATGHVNAYFPLLIPKSFLMKEAEHVEGFAPE 90

Query: 93  MLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  +     +      +  PT E ++   +   ++SYR+LP    Q     R E+R R  
Sbjct: 91  VAEVTRAGGEDLAEPYVIRPTSETIIGYFYSKWVRSYRDLPLLINQWANVMRWEMRTRPF 150

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R+ EFL ++                                                H
Sbjct: 151 L-RTTEFLWQEG-----------------------------------------------H 162

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                 +  E +       +      +      I  L S  E++              L 
Sbjct: 163 TVHATEEDAERETLLILHEVYADFVEKEMAIPVIKGLKSEKEKFPG-----------ALR 211

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               E      R ++ G     G  ++     T+        Y    S+G+ + R++ A+
Sbjct: 212 SYCIEAMMQDGRALQAGTSHNLGQNFARAFDITYTDQQNTIQYAWTTSWGV-STRLIGAL 270

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMG 385
           I +  D +G++ P  +AP ++ ++ I  +D       +A +++ A           DD  
Sbjct: 271 IMTHSDDEGLVIPPRLAPTQVVVVPIYRNDAERSVVMEAVQRMTAEWKGR-LRFKIDDRD 329

Query: 386 E-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMSLEEVINYASHR 441
               G +F   +L G P++V +G K +    V I  R       +  +  + + +  +  
Sbjct: 330 NLTPGFKFNEWELKGVPIRVEIGPKDIEKGSVAIARRDQPGREGKSFVPQDGLTDRLTAL 389

Query: 442 FSNNRPVL 449
               +  L
Sbjct: 390 LEEIQQAL 397


>gi|294673774|ref|YP_003574390.1| proline--tRNA ligase [Prevotella ruminicola 23]
 gi|294473292|gb|ADE82681.1| proline--tRNA ligase [Prevotella ruminicola 23]
          Length = 493

 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 148/443 (33%), Gaps = 52/443 (11%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E  + A+  S     L+++  +  Q +  G     P G    + +   + +    TGA
Sbjct: 5   LKELTKRADNYSQWFNDLVVKADLAEQSAVRGCMVIKPYGYAIWEKMQQQLDKMFKETGA 64

Query: 67  IEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
                P L     L  E+   + + KE   +     +A       E   T      +   
Sbjct: 65  QNAYFPLLIPKSFLSKEAEHVEGFAKECAVVTHYRLRAKEDKSGVEVDPTAKLEEELIVR 124

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                  +     +                     +S+   P       N M        
Sbjct: 125 PTSETIIWNTYKNW--------------------IHSWRDLPLMCNQWCNVMRWEMRTRP 164

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                + +     +     + +            +V+         +P           +
Sbjct: 165 FLRTSEFLWQEGHTAHATREEA----EEEAQKMLKVYAKFAEEWMAVP-----------V 209

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
              V+  T  +A   D +         E      + ++ G   + G  ++     T+   
Sbjct: 210 VQGVKSETERFAGALDTYT-------IEAMMQDGKALQSGTSHFLGQNFAKAFEVTYLNK 262

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ +I I    +      
Sbjct: 263 ENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPRLAPIQVVIIPIATKPEQMEQVN 321

Query: 366 EK---IYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           ++   I   L   G  V +DD   ++ G +FA  +L G P+++++G++ + +  +E+  R
Sbjct: 322 KEVTPIIEALRAKGITVKFDDADNKRPGFKFADYELKGVPVRLVLGARDLENGTIEVMRR 381

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            T  +E  S++ +  Y      +
Sbjct: 382 DTLEKETRSIDGITEYVEQLLED 404


>gi|296228693|ref|XP_002759920.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial isoform 2
           [Callithrix jacchus]
          Length = 588

 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 129/417 (30%), Gaps = 55/417 (13%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--------------- 94
            D ++ + + E  R G  E+  PTL S  LW +SG ++ Y ++M                
Sbjct: 202 RDQLHRLFKAEYARRGFFEVKTPTLFSTKLWEQSGHWEHYQEDMFAVQPPGSDRPASSQS 261

Query: 95  -RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRS 152
                     +   P +      +F    +S+R LP          R E      G+ R 
Sbjct: 262 DHSTRHTTDTLALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLCGLTRL 321

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F   DA+ F  T +               ++  LG         + P G         
Sbjct: 322 RCFQQDDAHIFCTTDQLEAE-IQSCLDFLRSVYAVLGFSFRLA-LSTRPSGF-------- 371

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                           D           +      +     A Y    DVH   L D+L 
Sbjct: 372 ---------LGDPCLWDQAEQVLQQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALG 419

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIES 331
              +     ++    F    ++       +KG  G       +    +G++  +  V+  
Sbjct: 420 RPHQCGTIQLD----FQLPLRFD----LQYKGQAGALERPVLIHRAVLGSVERLLGVLA- 470

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGS 390
             +     WP  ++PF++ +I +    +   +   +    L   G     D D    +  
Sbjct: 471 --ESCRGKWPLWLSPFQVVVIPVGTEQE---EYARETQQSLQAAGLVCDLDADSRLTLSR 525

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +   A L  +  Q +VG K  S S V I+ R   +  + SL E +       +   P
Sbjct: 526 RIRRAQLAHYNFQFVVGQKEQSKSTVNIRTRDNRLLGEWSLPEAVQRLVVLQNTRVP 582


>gi|167752565|ref|ZP_02424692.1| hypothetical protein ALIPUT_00818 [Alistipes putredinis DSM 17216]
 gi|167659634|gb|EDS03764.1| hypothetical protein ALIPUT_00818 [Alistipes putredinis DSM 17216]
          Length = 494

 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 63/429 (14%), Positives = 139/429 (32%), Gaps = 49/429 (11%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L+++ G+    +  G     P G    + + A + +    TG      P       +  E
Sbjct: 22  LVVKAGLAENSAVRGCMVIKPYGYAIWEKMQAALDKMFKDTGHQNAYFPLFIPKSFFSKE 81

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +   + + KE   +                          +   +       +    + E
Sbjct: 82  ADHVEGFAKECAVVTH-----------------------YRLKNDPEGKGVVVDPDAKLE 118

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                                        ++Y     SY  +       +  +R E    
Sbjct: 119 EELIVRPTS---------------ETIIWNTYKGWIQSYRDLPILCNQWANVVRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+     G T     ++ ++      +  +   +     V       +     
Sbjct: 164 LFLRTAEFL--WQEGHTAHATKEEAIEEATRMIHV-YQKFVEEWMGVPVIVGHKSPNERF 220

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                  ++ E      + ++ G   + G  ++      +   +GK  YV   S+G+ + 
Sbjct: 221 AGAVDTLTI-EALMQDGKALQSGTSHFLGQNFAKAFDVQYINKEGKLEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ LI I   ++  R   E+   I   L   G  V
Sbjct: 279 RLMGALIMAHSDNNGLVLPPKLAPIQVVLIPIYKGEEQMRQIVERLRTIAEELKSKGLSV 338

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             DD    + G +FA  +L G P+++ +G + + +  +E+  R T  +E +  E + +  
Sbjct: 339 KIDDRDNVRSGFKFAEYELKGVPVRLALGPRDLENGTIELVRRDTLEKETVPQEGLTDRV 398

Query: 439 SHRFSNNRP 447
           +      + 
Sbjct: 399 AALMDEIQQ 407


>gi|86742091|ref|YP_482491.1| threonyl-tRNA synthetase [Frankia sp. CcI3]
 gi|86568953|gb|ABD12762.1| threonyl-tRNA synthetase [Frankia sp. CcI3]
          Length = 438

 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 81/451 (17%), Positives = 135/451 (29%), Gaps = 66/451 (14%)

Query: 17  DAEIASHKLMLRTG--MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           D      +L L     +I     G+  WLP G      +   IR  + R G   +  P L
Sbjct: 3   DHRKLGRELELFDTDPLI---GSGLPYWLPAGAVVRHTLEEYIRGVERRAGYRHVYSPVL 59

Query: 75  QSADLWVESGRYDSYGKEMLRLADRN-------------------------DKAMIYGPT 109
              +L+  SG +  Y  +M    D +                          + M+  P+
Sbjct: 60  GKRELYEISGHWSHYRDDMFPPMDLSGERLGGERLGGERLGGERLGGERLGGEQMVLRPS 119

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
                  I+RS   SYR+LP    ++   +R EL    G +     +  +       PE 
Sbjct: 120 LCPHHALIYRSRAHSYRDLPLRMAELGGMYRSELSGVLGGLTRVRAIQLNDAHIFCAPEQ 179

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                          +  LG+     R      GG                         
Sbjct: 180 VADEARAALELIREAYGALGVSPARYRLSLPGPGGK---------------YVGDPGMWR 224

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                     D        VE   A Y    DV   ++ DS      +S   I+      
Sbjct: 225 RSAALLTEVLDAAGVAYEAVEGEAAFYGPKIDV---QIVDSAGREATLSTVQIDFHQPER 281

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           F  +Y+ P  A           V +    IG++    A      +  G  +P  +AP ++
Sbjct: 282 FDLRYAGPDGA-------MRRPVMVHRSVIGSVERAVA---HLIESHGGAFPPWLAPVQL 331

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVG 407
             + I   +         +  + +  G          G  +G++   A L   P Q I+G
Sbjct: 332 VALPISDAE---VPHALALVRQAADRGLRAEAAGPQRG-TLGARVRAARL--VPYQAIIG 385

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           ++  +D +V ++ R     E     EV+   
Sbjct: 386 AREAADERVSLRLRDGRRLEARPAAEVLAGI 416


>gi|224064768|ref|XP_002301553.1| predicted protein [Populus trichocarpa]
 gi|222843279|gb|EEE80826.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 71/422 (16%), Positives = 139/422 (32%), Gaps = 68/422 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + + A    E  +        P   S+  L  E    + +  E+  
Sbjct: 45  SGCYILRPWSMSIWETMQAFFDVEIKKMKIKNCYFPLFVSSSVLQKEKDHIEGFAPEVAW 104

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   F   I+ +R+LP    Q     R E       +R
Sbjct: 105 VTKAGKSDLEVPVAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIR 164

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   + + +     ++   Y                        +  EF+
Sbjct: 165 SREFLWQEGHTAFASKQEADEEVLQILELY----------------------RRIYEEFL 202

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                         I    S +E++      TS      +   +
Sbjct: 203 A--------------------------IPVIKGKKSEMEKFAGGLYTTS------VEAFI 230

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     + RGI+       G  ++      F+   G+       S+   + R +  ++  
Sbjct: 231 PN----TGRGIQGATSHCLGQNFAKMFEINFENEKGEKGMAWQNSWAY-STRTIGVMVMV 285

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
             D KG++ P  VA  ++ ++ +   D   Q   DAC      L + G     D      
Sbjct: 286 HGDDKGLVLPPKVASVQVIVVPVPYKDADTQGIFDACAATVDTLCEAGIRAEADFRENYS 345

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            G +++  ++ G PL++ +G K +++++V    R    + D+S + ++        + + 
Sbjct: 346 PGWKYSHWEMKGVPLRIEIGPKDLANNQVRAVRRDNAAKVDISRDSLMEKVKDMLDDIQQ 405

Query: 448 VL 449
            L
Sbjct: 406 RL 407


>gi|310659541|ref|YP_003937262.1| prolyl-tRNA synthetase 2 [Clostridium sticklandii DSM 519]
 gi|13633967|sp|Q9L4Q8|SYP_CLOSD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|6899998|emb|CAB71307.1| prolyl tRNA synthetase [Clostridium sticklandii]
 gi|308826319|emb|CBH22357.1| Prolyl-tRNA synthetase 2 (Proline--tRNA ligase 2) (ProRS 2)
           [Clostridium sticklandii]
          Length = 481

 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 57/410 (13%), Positives = 116/410 (28%), Gaps = 61/410 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+ A +      TG      P L    L   E    + +  E+  +
Sbjct: 40  GFMVIKPYGYAIWENIQAFLDRRFKETGHQNCYFPLLIPESLLNKEKEHVEGFAPEVAWV 99

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                + +                                                    
Sbjct: 100 THGGSEKLAERLCVRPT------------------------------------------- 116

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS-IPMRAESGPIGGDLSHEFIVLAD 215
                           SY ++   Y +    +  +        +        H     A+
Sbjct: 117 --SETIICSMYSKWLTSYRELPYLYNQWCSVVRWEKSTRPFLRTSEFLWQEGHTLHETAE 174

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             + +                     +    S  E++    A  +            E  
Sbjct: 175 EAQAETLQMLAIYKEMAEDLLA-IPVVDGRKSDRERFAGAAATYT-----------IEAL 222

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G        ++     TF+G  G+  Y    S+G  + R++  +I    D 
Sbjct: 223 MHDGKALQSGTSHNLAQHFTKAFDITFQGRTGELEYPHHTSWGA-STRLIGGIIMVHGDN 281

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAV 394
           +G++ P  VAP ++ +I I  + +   D   +I   L   G  V  DD      G +F  
Sbjct: 282 RGLVLPPRVAPTQVVIIPIAQNKEGVLDKAYEIKKELEAKGIRVTLDDDTNYSPGWKFNQ 341

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ G PL++ +G + + ++   I  R T  ++  SL+ + +   +    
Sbjct: 342 YEMKGVPLRLEIGPRDIENNVAMIARRDTLSKDSYSLDNIGDTVKNLLDT 391


>gi|218260218|ref|ZP_03475604.1| hypothetical protein PRABACTJOHN_01265 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224670|gb|EEC97320.1| hypothetical protein PRABACTJOHN_01265 [Parabacteroides johnsonii
           DSM 18315]
          Length = 526

 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 68/412 (16%), Positives = 140/412 (33%), Gaps = 48/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +  I+ +    TG +    P L     L  E+   + + KE   +
Sbjct: 69  GCMVIKPYGYAIWEKMQRILDDMFKETGHVNAYFPLLIPKSFLSKEAEHVEGFAKECAVV 128

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +   N   T   +    + E              
Sbjct: 129 TH-----------------------YRLKTNHDGTGVVVDPAAKLE-------------- 151

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            ++      +     ++Y     SY  +       +  MR E        + EF+     
Sbjct: 152 -EELIIRPTSETIIWNTYRNWIQSYRDLPILCNQWANVMRWEMRTRLFLRTAEFLWQ--- 207

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                  +++  +         + D       +       +A+       L     E   
Sbjct: 208 EGHTAHATREEAEIEAKKMQGVYADFAENYMAMPVVKGVKSASERFAG-ALDTYTIEAMM 266

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  +      TF   +GK+ Y    S+G+ + R++ A+I S  D  
Sbjct: 267 QDGKALQAGTSHFLGQNFGKAFDVTFIDKNGKNEYAWATSWGV-STRLIGALIMSHSDDN 325

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ +I I    +      EK   I A+L  +G  V +DD   ++ G +F
Sbjct: 326 GLVLPPHLAPIQVVIIPIYRSAEQLAQISEKVNGIVAKLKALGISVKFDDADNKKPGWKF 385

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  +L G P+++ +G + + ++ +E+  R T  +E ++ + +  Y  +    
Sbjct: 386 AEYELKGVPVRLAMGGRDLENNTIEVMRRDTLEKETVTCDNIETYVQNLLEE 437


>gi|313905495|ref|ZP_07838859.1| prolyl-tRNA synthetase [Eubacterium cellulosolvens 6]
 gi|313469679|gb|EFR65017.1| prolyl-tRNA synthetase [Eubacterium cellulosolvens 6]
          Length = 479

 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 66/413 (15%), Positives = 134/413 (32%), Gaps = 57/413 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G  +  P G    +N+   + E    TG   + +P L   +L  +               
Sbjct: 39  GCMAIKPAGYAIWENIQHNLDERFKATGVKNVYMPMLIPENLLNK--------------- 83

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
              +  ++ G   E                                   +      E L 
Sbjct: 84  ---EAELVNGFAPEVA---------------------------------WVTHGGAEKLQ 107

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           +       +       Y K   SY  +          +R E        S EF+     G
Sbjct: 108 ERLCIRPTSETLFCDFYAKDIQSYKDLPKVYNQWCSVLRWEKTTRPFLRSREFL--WQEG 165

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            T    +++  +  +   N    D +  +  +                K   ++ E    
Sbjct: 166 HTAHATAEEAEERTVQMLNVYA-DFLENDLAIPVVKGQKTEKEKFAGAKHTYTV-EALMH 223

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + ++ G    F   ++      +   D    +V   S+G+   RV+ A+I    D  G
Sbjct: 224 DGKALQSGTSHNFDDIFAQAYDVQYTDKDNTLKHVHQTSWGM-TTRVIGAMIMVHGDNSG 282

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           ++ P  +AP ++ +I I+   +   D   +I  +L+  G  V  DD  ++ G +F+  ++
Sbjct: 283 LVLPPHIAPTQVMIIPIRQDAEGVLDKAVEIKEKLATAGIRVDLDDTDKRPGWKFSEQEM 342

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN-NRPVL 449
            G P++V +G K V +    +  R T  +  +S++E+    +       + +L
Sbjct: 343 RGIPVRVELGPKDVENGSAVLVRRDTREKLVVSIDEIAEKTAELLETIQKEML 395


>gi|213403478|ref|XP_002172511.1| cytoplasmic proline-tRNA ligase Prs1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000558|gb|EEB06218.1| cytoplasmic proline-tRNA ligase Prs1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 711

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 70/440 (15%), Positives = 137/440 (31%), Gaps = 77/440 (17%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++ ++ MI  +   G Y   P      + +      E  + G      P   S+  L 
Sbjct: 216 QQVLTKSDMIEYYDISGCYILKPWSYFIWEVIQKWFDTEIKKIGVKNGYFPLFVSSRVLE 275

Query: 81  VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +        ++ +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 276 KEKDHVEGFAPEVAWVTRAGSSDLEEPIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWN 335

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT E +    + +   Y R++  L        
Sbjct: 336 SVVRWEFKNPQPFLRTREFLWQEGHTAFLTKEEADKEVHYILDLYSRVYSDL-------- 387

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                                                        +  + S  E++    
Sbjct: 388 ----------------------------------------LALPVVKGVKSENEKFAGGL 407

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-----DGKDHY 311
             T+                 + RGI+       G  +S   +   +       +G+   
Sbjct: 408 YTTT----------CEGYIPTTGRGIQGATSHGLGQNFSKMFNIAVEDPDAELVNGERPK 457

Query: 312 VQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-------QVCRD 363
             +     G + R +   +    D KG+  P +VA  +  ++     +           +
Sbjct: 458 RYIWQNSWGLSTRTIGVAVMVHGDDKGLKLPPAVASIQAIVVPCGITNKTTDAQRAELEN 517

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C++I   L         D      G +FA  +L G PL++  G       +V    R T
Sbjct: 518 KCKQIADSLVAGEVRAEVDLRSYTPGYKFAHWELKGVPLRIEYGPNDAKKEQVTAVRRDT 577

Query: 424 GIREDMSLEEVINYASHRFS 443
             +  + L  + N      +
Sbjct: 578 FEKIAIPLANLANGVQDVLA 597


>gi|255081150|ref|XP_002507797.1| bifunctional aminoacyl-tRNA synthetase [Micromonas sp. RCC299]
 gi|226523073|gb|ACO69055.1| bifunctional aminoacyl-tRNA synthetase [Micromonas sp. RCC299]
          Length = 588

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 131/417 (31%), Gaps = 73/417 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
            G Y   P      + +     +E  + G      P   S+     E    + +  E+  
Sbjct: 130 SGCYILRPWAYSMWEQIKDFFDKEIKKEGVENCYFPLFVSSARLEAEKDHIEDFAPEVAW 189

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D  +   PT E VM  +F + I+S+R+LP    Q     R E +     +R
Sbjct: 190 VTRSGQSELDVPIAVRPTSETVMYPVFANWIRSHRDLPMKLNQWCNVVRWEFKHPTPFIR 249

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++       +           L ++ R+                       
Sbjct: 250 SREFLWQEGHTAFTNKADADKEVR----HILDLYRRVY---------------------- 283

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      I  + S  E++    Y  T +         
Sbjct: 284 ----------------------EELLAVPVIPGVKSEKEKFAGGLYTTTVEAFVPA---- 317

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                  + RGI+       G  ++      ++  +G    V   S+G    R +   I 
Sbjct: 318 -------TGRGIQGATSHCLGQNFAKMFQIEYENKNGGRSMVWQNSWGC-TTRTIGVAIM 369

Query: 331 SSHDGKGIIWPDSVAPFKISLINI------KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              D KG++ P  VAP ++ ++ I          +   D  + +   +   G     DD 
Sbjct: 370 VHGDNKGLVLPPRVAPLQVVVVTIPNSKLSAEDSKKLNDTAKAMSDGMIDAGLRSKLDDR 429

Query: 385 GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                G ++   +L G PL+   G + +      +  R TG +E + L ++   A  
Sbjct: 430 DNYTPGWKYNHWELKGVPLRCEFGPRDMEAGHCVVVRRDTGAKETVKLVDLPVRAKE 486


>gi|254167402|ref|ZP_04874254.1| prolyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623665|gb|EDY36228.1| prolyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 465

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/423 (14%), Positives = 136/423 (32%), Gaps = 67/423 (15%)

Query: 29  TGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGR 85
            G++ +     G++ WLP G + + N++   R+        E+  P L    +   E+  
Sbjct: 19  AGLVDKRYPVKGMHVWLPYGWQLMRNIDEYFRKVFTEHKHQEVYFPLLIPETEFKKEAEH 78

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            + +  E+  +       +                                         
Sbjct: 79  IEGFENEVYWVTHGGLDPLDVKLVVRP--------------------------------- 105

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
                 +  + M   +         +         Y     R  ++          +   
Sbjct: 106 ---TSETAMYPMFSLWIRSHADLPLRIFQIVNVFRYETKQTRTFIRV-------REVHFF 155

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ--WTAPYAATSDVH 263
            SH     A+  E Q+  + +             D +     +V +  W     A   + 
Sbjct: 156 ESHTAHATAEESEEQIKDNIEIW-------KKVADKLALPYVLVRKTDWDKFPGAAYSIG 208

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E +  S         R +++  I  +   +S P    +   DG   YV   ++G+ + R
Sbjct: 209 AETIMPS--------GRTLQIATIHQYFQNFSKPYGIEYLKEDGTHDYVHQTTFGM-SER 259

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWD 382
           +V A++    D +G+I P  +AP ++ ++ I   + +       KI   L ++   V  D
Sbjct: 260 LVGAIVGIHGDNRGLILPPEIAPIQVVIVPIVNKNKEGILQEARKIENELKEL-YRVHLD 318

Query: 383 DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D      G +F   +L G PL++ +G + +   +V +  R    +  +S +E ++     
Sbjct: 319 DRDNYTPGYKFYDWELKGVPLRLEIGPRDLEKGQVVLVRRDNFEKIFVSRKEYVDRIGEL 378

Query: 442 FSN 444
             +
Sbjct: 379 LKD 381


>gi|256076493|ref|XP_002574546.1| glutamyl-tRNA synthetase cytoplasmic (glutamate--tRNA ligase) (glurs)
            [Schistosoma mansoni]
 gi|238659754|emb|CAZ30779.1| glutamyl-tRNA synthetase, cytoplasmic (glutamate--tRNA ligase)
            (glurs), putative [Schistosoma mansoni]
          Length = 1306

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/425 (18%), Positives = 146/425 (34%), Gaps = 77/425 (18%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y   P       ++   + E+    G      P   S   L  E      +  E+  
Sbjct: 827  SGCYILRPWAYHMWQSIQCFMDEKLKVMGIENAYFPMFVSKSALEREKNHVTDFAPEVAW 886

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    D  +       PT E +M  IF   I+S+R+LP    Q     R E +     +R
Sbjct: 887  VTKSGDTDLAEPIAIRPTSETIMYPIFAKWIQSHRDLPLRINQWSNVVRWEFKHPQPFLR 946

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ ++       ++     +   Y                              
Sbjct: 947  TREFLWQEGHTAFAEKADAEAEVRVILDLY------------------------------ 976

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
              A+  E  +                    +    +  E++  A Y  T +++ +     
Sbjct: 977  --AEVYEYLLA----------------VPVVKGRKTEREKFAGADYTTTVEIYID----- 1013

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVI 329
                   + R I+     + G  +S     T+     GK  YV   S+G+   R +  +I
Sbjct: 1014 ------GNGRAIQGATSHHLGQNFSRMFDVTYDHPVTGKPAYVYQNSWGL-TTRTLGVLI 1066

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVG--CDVF 380
                D KG++ P  VAP++I ++             +    A   ++  L+K      V 
Sbjct: 1067 MVHSDDKGLVLPPRVAPYQIVIVPCGITAKTTVQERETLLSAAHSVFELLNKSNKQFRVH 1126

Query: 381  WDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD      G +F   +L G P+++ +G + V+D KV +  R TG R ++ ++ +IN   
Sbjct: 1127 CDDRDNVSPGWKFNHWELKGVPIRLEIGPQEVADRKVCLVLRHTGERVNVPMDSLINELP 1186

Query: 440  HRFSN 444
                +
Sbjct: 1187 RILDD 1191


>gi|159155613|gb|AAI54534.1| LOC562037 protein [Danio rerio]
          Length = 476

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 127/429 (29%), Gaps = 76/429 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
            G Y   P      D +      E  + G      P   S A L  E      +  E+  
Sbjct: 8   SGCYVLRPWSYSIWDAIKEFFDREIKKLGVENCYFPMFVSQAALEKEKTHIADFAPEVAW 67

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 68  VTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR 127

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++   T E +     ++   Y R++                          
Sbjct: 128 TREFLWQEGHTAFATKEEATEEVLQILDLYARVYE------------------------- 162

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      +    +  E++    Y  T +         
Sbjct: 163 -----------------------ELMAIPVVKGRKTEKEKFAGGDYTTTVEAFISA---- 195

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                  S R I+     + G  +S      F+                G   R +  + 
Sbjct: 196 -------SGRAIQGATSHHLGQNFSRMFEIVFEDPKKPGEKQLAYQNSWGITTRTIGVLT 248

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWD 382
               D  G++ P  VA  ++ +I          A   +  D C K  +RL K    V  D
Sbjct: 249 MVHGDNMGLVLPPRVACLQVIIIPCGITATLPEAEKDLLLDQCSKYLSRLQKADIRVKAD 308

Query: 383 DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASH 440
                  G +F   +L G P++  VG K +   + V ++ R TG +  +   +      +
Sbjct: 309 LRDNYSPGWKFNHWELKGVPIRFEVGPKDLKQGQFVAVR-RDTGEKITVKEADAEKKIPN 367

Query: 441 RFSNNRPVL 449
                +  L
Sbjct: 368 LLEEIQNNL 376


>gi|32140557|dbj|BAC78195.1| prolyl-tRNA synthetase [Raphanus sativus]
          Length = 544

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/421 (16%), Positives = 133/421 (31%), Gaps = 76/421 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +  +   TG   M  P       +  E+   + +  E+  +      
Sbjct: 101 PYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTVGGGH 160

Query: 103 AMIY----GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E ++  +F   I SYR+LP    Q     R E+R     +R+ EFL +
Sbjct: 161 ELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMR-TKPFIRTLEFLWQ 219

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +           + +  +                                          
Sbjct: 220 E---GHTAHATPEEAEKEAKQMIEIYTRFAF----------------------------- 247

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                           E T    I    S +E +                    E     
Sbjct: 248 ----------------EQTSIPVIAGRKSKLETFAG-----------ADTTYTIEAMMGD 280

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G     G  +S      F+  +G+  +V   S+ + + R V  +I +  D  G+
Sbjct: 281 RKALQAGTSHNLGQNFSRAFGTQFQDENGERQHVWQTSWAV-STRFVGGIIMTHGDDTGL 339

Query: 339 IWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
           + P  +AP ++ ++ I   D        A   +   L   G  V  DD  E+  G +F  
Sbjct: 340 MLPPKIAPIQVVIVPIWKKDTEKTQVLSAASSVKEVLQTAGVRVKLDDTTERTAGWKFNF 399

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLE--EVINYASHRFSNNRPV 448
            ++ G P+++ +G + VS + V +  R      G    +S+E   ++ Y   +    +  
Sbjct: 400 WEMKGVPIRIEIGPRDVSSNCVVVSRRDIPGKAGKVFGISMEPSTLVAYVKEKLDEIQSS 459

Query: 449 L 449
           L
Sbjct: 460 L 460


>gi|321460980|gb|EFX72016.1| hypothetical protein DAPPUDRAFT_227683 [Daphnia pulex]
          Length = 1566

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 79/455 (17%), Positives = 143/455 (31%), Gaps = 78/455 (17%)

Query: 13   ENPRD---AEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            E  +D   AE  S +++ +  MI  +   G Y   P      +++      E  + G   
Sbjct: 1070 EAKKDENLAEWYS-QVITKAEMIEYYDVSGCYILRPWAYAIWESIKDFFDAEIKKLGVQN 1128

Query: 69   MSVPTLQSA-DLWVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIK 123
               P   S   L  E      +  E+  +    +  +       PT E VM   +   I+
Sbjct: 1129 CYFPMFVSHHALEKEKTHIADFAPEVAWVTKSGNSDLAEPIAIRPTSETVMYPAYAKWIQ 1188

Query: 124  SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
            S+R+LP    Q     R E +     +R+REFL ++ ++   T + ++           +
Sbjct: 1189 SHRDLPLKLNQWNNVVRWEFKHPQPFLRTREFLWQEGHTAFATAKEAE-------EEVFQ 1241

Query: 184  IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            I          + A     G     E     D                            
Sbjct: 1242 ILELYSQVYTDLMAIPVIKGRKTEKEKFAGGD---------------------------- 1273

Query: 244  SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               + VE + A                         RGI+     + G  +S       +
Sbjct: 1274 -FTTTVEAFIAASG----------------------RGIQGATSHHLGQNFSKMFEIVIE 1310

Query: 304  GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH------ 357
              + K+      +      R +  ++    D KG++ P +VA  ++ ++    +      
Sbjct: 1311 DPETKEKKHIYQNSWGLTTRTIGVMVMVHSDDKGLVLPPNVASIQVVIVPCGINVNVSEE 1370

Query: 358  -DQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                   AC++    LS  G  V  D       G +F   +L G PL+V +G + V   +
Sbjct: 1371 EKNNLMTACQEYEKVLSAAGIRVKGDYRDNYSPGWKFNHWELKGVPLRVEIGPRDVKQGE 1430

Query: 416  -VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             V ++ R T  +   S+        H     +  L
Sbjct: 1431 YVAVR-RDTSEKLTKSMASAAGDIKHLLDTIQKAL 1464


>gi|256076491|ref|XP_002574545.1| glutamyl-tRNA synthetase cytoplasmic (glutamate--tRNA ligase) (glurs)
            [Schistosoma mansoni]
 gi|238659753|emb|CAZ30778.1| glutamyl-tRNA synthetase, cytoplasmic (glutamate--tRNA ligase)
            (glurs), putative [Schistosoma mansoni]
          Length = 1346

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/425 (18%), Positives = 146/425 (34%), Gaps = 77/425 (18%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y   P       ++   + E+    G      P   S   L  E      +  E+  
Sbjct: 867  SGCYILRPWAYHMWQSIQCFMDEKLKVMGIENAYFPMFVSKSALEREKNHVTDFAPEVAW 926

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    D  +       PT E +M  IF   I+S+R+LP    Q     R E +     +R
Sbjct: 927  VTKSGDTDLAEPIAIRPTSETIMYPIFAKWIQSHRDLPLRINQWSNVVRWEFKHPQPFLR 986

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ ++       ++     +   Y                              
Sbjct: 987  TREFLWQEGHTAFAEKADAEAEVRVILDLY------------------------------ 1016

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
              A+  E  +                    +    +  E++  A Y  T +++ +     
Sbjct: 1017 --AEVYEYLLA----------------VPVVKGRKTEREKFAGADYTTTVEIYID----- 1053

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVI 329
                   + R I+     + G  +S     T+     GK  YV   S+G+   R +  +I
Sbjct: 1054 ------GNGRAIQGATSHHLGQNFSRMFDVTYDHPVTGKPAYVYQNSWGL-TTRTLGVLI 1106

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVG--CDVF 380
                D KG++ P  VAP++I ++             +    A   ++  L+K      V 
Sbjct: 1107 MVHSDDKGLVLPPRVAPYQIVIVPCGITAKTTVQERETLLSAAHSVFELLNKSNKQFRVH 1166

Query: 381  WDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD      G +F   +L G P+++ +G + V+D KV +  R TG R ++ ++ +IN   
Sbjct: 1167 CDDRDNVSPGWKFNHWELKGVPIRLEIGPQEVADRKVCLVLRHTGERVNVPMDSLINELP 1226

Query: 440  HRFSN 444
                +
Sbjct: 1227 RILDD 1231


>gi|325973664|ref|YP_004250728.1| threonyl-tRNA synthetase [Mycoplasma suis str. Illinois]
 gi|323652266|gb|ADX98348.1| threonyl-tRNA synthetase [Mycoplasma suis str. Illinois]
          Length = 424

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/432 (13%), Positives = 126/432 (29%), Gaps = 27/432 (6%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQ 75
           D                +   G   W   G K  + +   I + Q    G   +  P L 
Sbjct: 16  DHRTVGKNK-GFFYFSKEIGSGFSFWASEGYKLREIIKRYINDFQRDICGINLVQTPILG 74

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
             +++ ++G    Y + +     +  +  I  P        + +  I SY+ LP+   + 
Sbjct: 75  KTEIYQKTGHLPLYDENIFPAMKKEGEEWILRPMTCPHHILLAKEVIMSYKQLPYLMGEN 134

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               R E       ++    +        + PE  K            + ++  ++   +
Sbjct: 135 SCLHRYEYSGGLLGLKRVRAMELIDTHIFVLPEHCKDMIKSSLEWVWTLLNKFRIRIKEI 194

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              +         ++++  D                I S+N     +       E   A 
Sbjct: 195 VLAT----RSSKQKYLISGDEWNQTEEILFSATKEWIASKNISVSLV-----RKEGEAAF 245

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y    D +     DS  +   +S   ++               S  +   +  + ++   
Sbjct: 246 YGPKIDFNAV---DSSNQEFTISTVQLDSQMPKKL------EFSILYANQNSINPWIIHL 296

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
                  R +A ++E            +        I+   H+        ++  + S  
Sbjct: 297 GLIGTLERFIAYLLEDWGGKLPFWLLPTQISILTVRIDSSRHE------LNELIKKFSSY 350

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEV 434
           G     D   E+I  +   A     P Q+I+G K + +   +  +       + +S  + 
Sbjct: 351 GFRAKLDLRDERISKKIVNAVNERIPFQIIIGEKELQNLDLINFRELGKEGEKQLSFSDF 410

Query: 435 INYASHRFSNNR 446
           INY S    +N+
Sbjct: 411 INYLSQEEVSNQ 422


>gi|114572709|ref|XP_001172362.1| PREDICTED: glutamyl-prolyl tRNA synthetase isoform 1 [Pan
            troglodytes]
          Length = 1279

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 123/424 (29%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y   P      + +      E  + G      P   S   L  E      +  E+  
Sbjct: 811  SGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAW 870

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 871  VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR 930

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 931  TREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYE------------------------- 965

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 966  -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISA---- 998

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+ G   + G  +S      F+                G   R +  + 
Sbjct: 999  -------SGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMT 1051

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I             +     C     RL +V   V  D
Sbjct: 1052 MVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLRVNIRVRAD 1111

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +     V ++ R TG +  ++  E       
Sbjct: 1112 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVAENEAETKLQA 1170

Query: 441  RFSN 444
               +
Sbjct: 1171 ILED 1174


>gi|189217492|ref|NP_001121216.1| hypothetical protein LOC100158287 [Xenopus laevis]
 gi|169642429|gb|AAI60714.1| LOC100158287 protein [Xenopus laevis]
          Length = 655

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/450 (15%), Positives = 133/450 (29%), Gaps = 77/450 (17%)

Query: 13  ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E  ++  +     +++ ++ MI  +   G Y   P      + +     +E  + G    
Sbjct: 160 EAKKEENLPDWYSQVITKSEMIEYYDVSGCYVLRPWAFAIWEAIKEFFDKEIKKLGVENC 219

Query: 70  SVPTLQS-ADLWVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKS 124
             P   S A L  E      +  E+  +       +       PT E VM   +   ++S
Sbjct: 220 YFPMFVSQAALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 279

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+LP    Q     R E +     +R+REFL ++ ++   T       Y +     L+I
Sbjct: 280 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFAT-------YEEAAEEVLQI 332

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     + A     G     E                                   
Sbjct: 333 LDLYARVYEDLLAIPVVKGRKTEKEKFA-------------------------------- 360

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                      Y  T +                S+R I+     + G  +S      F+ 
Sbjct: 361 --------GGDYTTTVEAFISA-----------SSRAIQGATSHHLGQNFSKIFEIVFED 401

Query: 305 ADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------A 356
                          G + R + A++    D  G++ P  VA  ++ +I           
Sbjct: 402 PKTPGLKQYAYQNSWGLSTRTIGAMVMVHADNIGMVLPPRVACVQVVIIPCGITNTLSEE 461

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                   C++   RL         D       G +F   +L G P+++ VG + + + +
Sbjct: 462 DKDALLKKCDQYLKRLLNADVRARADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNKQ 521

Query: 416 -VEIKHRLTGIREDMSLEEVINYASHRFSN 444
            V ++ R  G ++ +   +           
Sbjct: 522 FVAVR-RDNGEKQTIPEGQAETRLKEILEE 550


>gi|145347579|ref|XP_001418241.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578470|gb|ABO96534.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 524

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/417 (16%), Positives = 130/417 (31%), Gaps = 71/417 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
            G Y   P      + +      E           P   SA     E    + +  E+  
Sbjct: 66  SGCYILKPWAYAQWEYLKEFFDREIKELEVENCYFPMFVSASRLEAEKDHIEDFAPEVAW 125

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +  +       PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 126 VTRSGNTDLEVPIAVRPTSETVMYPHYAQWIRSHRDLPLRLNQWCNVVRWEFKHPTPFIR 185

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   +         ++   Y                        +  E++
Sbjct: 186 SREFLWQEGHTAYSSKAECDVEVRQILELY----------------------RRVYEEYL 223

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +                  +P + ++ +               Y  T + +        
Sbjct: 224 AVP----------------VVPGKKSEKEKFA---------GGDYTTTVEAYVP------ 252

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 S RG++       G  ++   +  ++ A G    V   S+G    R +  +   
Sbjct: 253 -----GSGRGVQGATSHCLGQNFAKMFNIEYEDAKGGRSLVWQNSWGF-TTRTLGVMYMV 306

Query: 332 SHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIY----ARLSKVGCDVFWDDMG 385
             D  G++ P  VAP +  +I I         +   ++I       L   G     D+  
Sbjct: 307 HGDDDGLVLPPKVAPVQAIVIPIPNSKLSDEAKQKMDEIATGMCKSLKAAGVRSKLDNRD 366

Query: 386 E-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
               G ++   +L G P++V  G++ +      I  R T  +E + +E++    S  
Sbjct: 367 NYTPGWKYNHWELKGVPMRVEFGARDLETGTCVIARRDTREKETVKIEDLTKRCSEL 423


>gi|55377088|ref|YP_134938.1| prolyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|74579418|sp|Q5V5H0|SYP_HALMA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|55229813|gb|AAV45232.1| proline-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 484

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 132/415 (31%), Gaps = 68/415 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P       L  E    + +  E+  +
Sbjct: 38  GFIVTRPRGYAIWERIQNNLDGWFKDTGVQNAYFPLFIPESYLEKEKDVVEGFDPEVAWV 97

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                  +       PT E ++        +S+R+LP    Q     R E        R+
Sbjct: 98  THGGHNELEERLAVRPTSESIIAPFMAQWTRSHRDLPMRLNQWCSVVRWEATETKPFFRT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           +EFL ++ ++     +G                                       E + 
Sbjct: 158 KEFLWQEGHTAHADEDG------------------------------------AWEETMT 181

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             D         +     P+       D     ++                   +   +P
Sbjct: 182 RLDQ--YARLYEEVMAMPPLKGRKPPHDKFPGAHTTT----------------TIETLMP 223

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           + K      ++     Y GT +      T+  AD +++     S+G+ + R + A+I + 
Sbjct: 224 DGK-----TVQAATSHYLGTSFGEAFDITYADADEEENTAHTTSWGL-SWRAMGALIMTH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ-IG 389
            D +G++ P ++AP ++ ++ I    +     D    + A L +    V  DD   +  G
Sbjct: 278 SDDQGLVLPPALAPDQVVVVPIWQEDNKDEVIDYAADLAAELDEADVRVELDDREHRNPG 337

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++   +L G PL+V +G   V D +  + HR  G  E +  + + +  +     
Sbjct: 338 FKYNEHELHGVPLRVEIGPHEVEDGEATLVHRPDGETETVDRDGIADTVTDHLDT 392


>gi|307106736|gb|EFN54981.1| hypothetical protein CHLNCDRAFT_24199 [Chlorella variabilis]
          Length = 572

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/421 (18%), Positives = 144/421 (34%), Gaps = 61/421 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + V + +      TG      P L     L  E+   + +  E+  +     K
Sbjct: 114 PYGYAIWEGVQSHLDRAFKETGHQNAYFPQLIPLSFLQKEADHVEGFAPELALVTKGGGK 173

Query: 103 AMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E ++  +F   ++SYR+LP    Q     R E+R R   +R+ EFL +
Sbjct: 174 ELEEPLVVRPTSETIVNHMFAQWVQSYRDLPLLINQWANVHRWEMRTRP-FVRTLEFLWQ 232

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T + ++    +M   Y                           E   +     
Sbjct: 233 EGHTAHATAQEAEEETIRMLRVY---------------------------EDFAVNVAAM 265

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
             V   K  ++    +  T   +               A   D    +     P  ++  
Sbjct: 266 PVVAGRKSRIESFAGANCTYTIE---------------AMMGDRRALQARRRAPWGRQEG 310

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           AR    G     G  ++      +    G+  YV   S+G+ + R+V  +I +  D  G+
Sbjct: 311 AR--LAGTSHNLGDNFARAFGTRYLDEGGQLQYVHQSSWGV-STRMVGGIIMTHGDDAGL 367

Query: 339 IWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
             P  +AP ++ ++ I   D   +    A +++ A L   G  V  D       G +F  
Sbjct: 368 RLPPRLAPTQVVIVPILKKDVDGEAVMAAVQRLEAALRGAGVRVQVDASTDRTPGWKFNQ 427

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLE--EVINYASHRFSNNRPV 448
            ++ G P++V VG + V         R      G +  + LE    + + +    + +  
Sbjct: 428 YEMKGVPVRVEVGPRDVEQGTCVTARRDVAGKEGKQFGVPLEPAAFVQHVTALLEDIQAA 487

Query: 449 L 449
           L
Sbjct: 488 L 488


>gi|332231899|ref|XP_003265132.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase [Nomascus
            leucogenys]
          Length = 1512

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 121/424 (28%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
             G Y   P      + +      E  + G      P   S   L  E      +  E+  
Sbjct: 1044 SGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQNALEKEKTHIADFAPEVAW 1103

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1104 VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR 1163

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 1164 TREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYE------------------------- 1198

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 1199 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISA---- 1231

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+ G   + G  +S      F+                G   R +  + 
Sbjct: 1232 -------SGRAIQGGTSHHLGQNFSKMFEIVFEDPKTPGEKQFAYQNSWGLTTRTIGVMT 1284

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I             +     C     RL  V   V  D
Sbjct: 1285 MVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRAD 1344

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +     V ++ R TG +  +   E       
Sbjct: 1345 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVVENEAETKLQA 1403

Query: 441  RFSN 444
               +
Sbjct: 1404 ILED 1407


>gi|111020488|ref|YP_703460.1| prolyl-tRNA synthetase [Rhodococcus jostii RHA1]
 gi|110820018|gb|ABG95302.1| proline--tRNA ligase [Rhodococcus jostii RHA1]
          Length = 530

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/418 (16%), Positives = 150/418 (35%), Gaps = 70/418 (16%)

Query: 28  RTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           + G++ +  +KG     P G +  + + + +      TG      P L     L  E+  
Sbjct: 76  KAGLVDRGPAKGTMVIRPYGYRLWELLQSELDRRIKDTGHENAYFPLLIPESYLGREAEH 135

Query: 86  YDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +     K     ++  PT E ++ ++    I S+R+LP    Q     R 
Sbjct: 136 VEGFSPELAVVTHVGGKVLEEPLVVRPTSETIIGEMMAKWISSHRDLPLLLNQWANVVRW 195

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           ELRPR   +R+ EFL ++ ++  +                                    
Sbjct: 196 ELRPRM-FLRTTEFLWQEGHTAHVDEA--------------------------------- 221

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                  E ++  D                +  E      +    +  E++    A  + 
Sbjct: 222 ---SARRETMLALDIYH------------EVARELAAIPVVPGEKTPGERFAGAVATYT- 265

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                      E      R ++ G   Y G K++      F    G++      S+G+ +
Sbjct: 266 ----------IEGMMRDGRALQSGTSHYMGIKFASAFDIRFTSETGREELCHTTSWGM-S 314

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD-ACEKIYARLSKVGCDVF 380
            R++  ++ +  D KG+++P  +AP ++ ++ I     V  + A +++  RL  VG    
Sbjct: 315 TRMIGGIVMTHGDDKGLVFPPRLAPHQVVIVPITRGGNVAVEGAADELAHRLRSVGVRTH 374

Query: 381 WDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV-EIKHRLTGIREDMSLEEVIN 436
            D       G ++   ++ G P+++ +G + + D  V  +K      ++ + ++ +  
Sbjct: 375 VDARPHLTPGFKYNEWEMRGVPVRLELGPRDLEDGTVMMVKRLGDDGKQAVPIDSLPE 432


>gi|254166566|ref|ZP_04873420.1| prolyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289596405|ref|YP_003483101.1| prolyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197624176|gb|EDY36737.1| prolyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289534192|gb|ADD08539.1| prolyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 465

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/423 (14%), Positives = 136/423 (32%), Gaps = 67/423 (15%)

Query: 29  TGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGR 85
            G++ +     G++ WLP G + + N++   R+        E+  P L    +   E+  
Sbjct: 19  AGLVDKRYPVKGMHVWLPYGWQLMRNIDEYFRKVFTEHKHQEVYFPLLIPETEFKKEAEH 78

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            + +  E+  +       +                                         
Sbjct: 79  IEGFENEVYWVTHGGLDPLDVKLVVRP--------------------------------- 105

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
                 +  + M   +         +         Y     R  ++          +   
Sbjct: 106 ---TSETAMYPMFSLWIRSHADLPLRIFQIVNVFRYETKQTRTFIRV-------REVHFF 155

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ--WTAPYAATSDVH 263
            SH     A+  E Q+  + +             D +     +V +  W     A   + 
Sbjct: 156 ESHTAHATAEESEEQIKDNIEIW-------KKVADKLALPYVLVRKTDWDKFPGAAYSIG 208

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E +  S         R +++  I  +   +S P    +   DG   YV   ++G+ + R
Sbjct: 209 AETIMPS--------GRTLQIATIHQYFQNFSKPYGIEYLKEDGTHDYVHQTTFGM-SER 259

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWD 382
           +V A++    D +G+I P  +AP ++ ++ I   + +       KI   L ++   V  D
Sbjct: 260 LVGAIVGIHGDNRGLILPPEIAPIQVVIVPIVNKNKEGILQEARKIENELKEL-YRVHLD 318

Query: 383 DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D      G +F   +L G PL++ +G + +   +V +  R    +  +S +E ++     
Sbjct: 319 DRDNYTPGYKFYDWELKGVPLRLEIGPRDLEKGQVVLVRRDNFEKMFVSRKEYVDRIGEL 378

Query: 442 FSN 444
             +
Sbjct: 379 LKD 381


>gi|301769275|ref|XP_002920053.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Ailuropoda
            melanoleuca]
          Length = 1509

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 124/424 (29%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
             G Y   P      +++      E  + G      P   S   L  E      +  E+  
Sbjct: 1041 SGCYILRPWAYSIWESIKDFFDAEIKKLGVENCYFPMFVSQGALEKEKTHIADFAPEVAW 1100

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1101 VTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLR 1160

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 1161 TREFLWQEGHSAFATFEEAAEEVLQILDLYAQVYE------------------------- 1195

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +V        
Sbjct: 1196 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTLEVFISA---- 1228

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+     + G  +S      F+                G   R +  + 
Sbjct: 1229 -------SGRAIQGATSHHLGQNFSKMFEIIFEDPKTPGEKQFAYQNSWGLTTRTIGVMT 1281

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIKAHD-------QVCRDACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I     +       +     C     RL  V   V  D
Sbjct: 1282 MVHGDNMGLVLPPRVASVQVVVIPCGITNALSEEDREALIAKCNDYRKRLLSVNIRVRVD 1341

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +     V ++ R TG +  ++  E       
Sbjct: 1342 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVADNEAETKLHA 1400

Query: 441  RFSN 444
               +
Sbjct: 1401 LLED 1404


>gi|319952066|ref|YP_004163333.1| prolyl-tRNA synthetase [Cellulophaga algicola DSM 14237]
 gi|319420726|gb|ADV47835.1| prolyl-tRNA synthetase [Cellulophaga algicola DSM 14237]
          Length = 491

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/412 (14%), Positives = 131/412 (31%), Gaps = 48/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG      P       L  E+   + + KE   +
Sbjct: 33  GCMVIKPYGYAIWEKMQAALDAMFKETGHENAYFPLFIPKSYLSKEASHVEGFAKECAVV 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +       +   +    + E              
Sbjct: 93  TH-----------------------YRLKMAEDGSGIIVDPDAKLEEELIVRPTS----- 124

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                           +Y +   SY  +   +   +  +R E        + EF+     
Sbjct: 125 ----------ETIIWDTYRRWIQSYRDLPILINQWANVVRWEMRTRLFLRTSEFL--WQE 172

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     K+ +       N   +   + N +           ++     +     E   
Sbjct: 173 GHTAHATEKEAVAEAEQMMNIYAE--FAENHMAVPVIKGLKTETERFAGAIETYCIEALM 230

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++      F   +GK   V   S+G+ + R++ A++ +  D K
Sbjct: 231 QDGKALQAGTSHFLGQNFAKAFDVKFTSKEGKQELVWATSWGV-STRLMGALVMTHSDDK 289

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMG-EQIGSQF 392
           G++ P  +AP ++ ++ I   D+      E+I      L   G  V +D+    + G +F
Sbjct: 290 GLVLPPKLAPIQVVIVPIYKGDEQLDAISERIAPLLKELRAKGVSVKYDNRDTYKPGFKF 349

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  +L G P+++ +G + + +   E+  R T  +E +  +E++        +
Sbjct: 350 AEYELKGVPIRLAIGQRDMDNGTFEVARRDTLEKETVQADEIVAKIEFLLED 401


>gi|312217649|emb|CBX97596.1| hypothetical protein [Leptosphaeria maculans]
          Length = 829

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 137/448 (30%), Gaps = 74/448 (16%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D    +    L   +   +S G    LP G      + A +R +  + G  E+  P +  
Sbjct: 97  DHRTLAETHDLF--ITSPYSPGSPLLLPNGAYVFQKLQAFLRAQYPQFGFEEVITPIIYK 154

Query: 77  ADLWVESGRYDSYGKEMLRLADR------------NDKAMIYGPTHEEVMTDIFRSHIKS 124
             LW +SG + +Y ++M  +  R            ++      P +      +FR  + S
Sbjct: 155 KSLWEKSGHWQNYAEDMFSVQGRGATAEIPQAEAEDNGEFGLKPMNCPGHCILFRDKVMS 214

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YRNLP  +       R+E+     G+ R R F   DA+ F    +       +       
Sbjct: 215 YRNLPVRYADFSALHRNEISGALTGLTRVRRFHQDDAHIFCRPDQILAE-IEQTLKFVGM 273

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +++  GL    +   + P                +     + +  D      +T  D+I 
Sbjct: 274 VYNTFGLGPYKLLLSTRP----------------KENFIGTIEEWDRAEAQLSTALDNIG 317

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
           S  ++ E   A Y    D+    L DS  +  + +   ++    F    ++ L   A+ +
Sbjct: 318 SEWAVNEGDGAFYGPKIDII---LKDSNGKEHQTATIQLD----FQLPQRFDLQYQASPE 370

Query: 304 G-ADGKDHYVQMG-----SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--- 354
               G +  +  G        +   R +   IE         +      +      I   
Sbjct: 371 EIEAGSEMSMDAGLDTSLRRPVMIHRAIYGSIERFMALLIEHYAGKYPFWLSPRPAIILS 430

Query: 355 KAHDQVCRDACEKIYARLSKVGCDV------------------------FWDDMGEQIGS 390
              D         I A LS  G                             D     +G 
Sbjct: 431 LNSDPKLLQHVSHIQAVLS--GVKASKEPVVSPPSDPKPLPLSTIQLPIDIDTSSRPLGK 488

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           + A A    +   ++VG + +    + +
Sbjct: 489 KIAEARTNKYNHIIVVGGREIEAGVMNL 516


>gi|116180492|ref|XP_001220095.1| hypothetical protein CHGG_00874 [Chaetomium globosum CBS 148.51]
 gi|88185171|gb|EAQ92639.1| hypothetical protein CHGG_00874 [Chaetomium globosum CBS 148.51]
          Length = 758

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/417 (17%), Positives = 131/417 (31%), Gaps = 61/417 (14%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G    LP G +  + +   +R++  R G  E+  PT+    LW +SG  ++Y  +M  
Sbjct: 6   SPGSPILLPNGARIFNRLIDFLRQQYVRYGFQEVITPTIYKKALWAKSGHLENYSDDMYT 65

Query: 96  LADR-----------NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           +               +      P +      IF S  +SYR+LP  +       R+E+ 
Sbjct: 66  VTSTSPSRAEVTDRGEEAEYGLKPMNCPGHCLIFASQTRSYRDLPIRYADFSPLHRNEIS 125

Query: 145 PR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G+ R R F   D + F    +       K        +  LGL    +   + P  
Sbjct: 126 GALSGLTRVRRFHQDDGHIFCRPSQIRDE-IAKTLDFVRLTYGVLGLGPYRLVLSTRPEQ 184

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
              S E    A++   +                          +I     A Y    D+ 
Sbjct: 185 YIGSEEDWTQAESALREALVGSRLQ-----------------YTINPGDGAFYGPKIDII 227

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYS-----------LPMSATFKGADGKDHYV 312
              L DS  +  + +   ++      F  +Y+           +   A      G    V
Sbjct: 228 ---LKDSDGKEHQTATIQLDFQLPKRFNLEYTAPAPEFEKRGAITTDAELLAEYGPVQPV 284

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +    +G+   + A++    +     WP  + P +  +I +  + +   +   +    L
Sbjct: 285 LIHRAVLGSAERLMALLI---EHYKGKWPFWLNPRQAIVITVN-NSEPVANWARQTRDIL 340

Query: 373 ----------SKV---GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                           G  +  DD    +  +   A   G+ L + VG + V    V
Sbjct: 341 LGVSASTSTIEAASPTGLAIDIDDSNRGVELKVREAKTKGYGLIIGVGPRDVETKTV 397


>gi|118486938|gb|ABK95302.1| unknown [Populus trichocarpa]
          Length = 498

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/417 (16%), Positives = 135/417 (32%), Gaps = 68/417 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +      E  +        P   S+  L  E    + +  E+  
Sbjct: 45  SGCYILRPWAMSIWEIMQVFFDAEIKKMKIKNCYFPLFVSSSVLEKEKDHIEGFAPEVAW 104

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   F   I+ +R+LP    Q     R E       +R
Sbjct: 105 VTKSGKSDLEIPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIR 164

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T + +     ++   Y                        +  EF+
Sbjct: 165 SREFLWQEGHTAFATKQEADEEVLQILELY----------------------RRIYEEFL 202

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                         I    S +E++      TS      +   +
Sbjct: 203 A--------------------------IPIIKGKKSEMEKFAGGLYTTS------VEAFI 230

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     + RGI+       G  ++      F+   G+       S+   + R +  ++  
Sbjct: 231 PN----TGRGIQGATSHCLGQNFAKMFEINFENEKGEKGMAWQNSWAY-STRTIGVMVMV 285

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
             D KG++ P  V+  ++ ++ +   D   Q   DAC      L + G     D      
Sbjct: 286 HGDDKGLVLPPKVSSVQVIVVPVPFKDANTQGIFDACAATVDTLCEAGIRAEADYRENYS 345

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            G +++  ++ G PL++ +G K +++++V    R    + D+S + +         +
Sbjct: 346 PGWKYSHWEMKGVPLRIEIGPKDLANNQVRAVRRDNAAKVDISCDNLAEKVKDMLDD 402


>gi|257075630|ref|ZP_05569991.1| prolyl-tRNA synthetase [Ferroplasma acidarmanus fer1]
          Length = 470

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 86/412 (20%), Positives = 159/412 (38%), Gaps = 70/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G+  WLP G K + ++++++RE  +  G  E+S P L S +    E      +  E+  +
Sbjct: 37  GMNVWLPYGLKIIHSIDSLLREYSDDGGIEEVSFPVLISREQLEVEFEHVKGFENEIYWV 96

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                   D  +   PT E  M  +F   I+S+ +LPF  YQI   +R E +     +R 
Sbjct: 97  TKGGTTPLDIDLALRPTSEAAMYTMFPLWIRSHSDLPFRIYQIVNVYRYETKHTRSFIRV 156

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           RE    +A++  +          K    YL+I  RL                        
Sbjct: 157 REIHFYEAHTAHVD----FEDAEKQMDEYLKIMERL------------------------ 188

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                 +   C    MD                      W     A   +++      +P
Sbjct: 189 ------SDDLCIYFSMDI------------------RPDWDKFPGA---MYSVAFDTPMP 221

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  R +++G I  +G  ++      +   +G   YV   ++G+ + R++AAVI   
Sbjct: 222 -----GYRSLQIGTIHEYGENFAKNYGIKYLDENGDMKYVSQTTFGL-SERLMAAVIGIH 275

Query: 333 HDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            D KG++ P  +AP ++ ++ I   +     +    I ++L ++G     D+     G +
Sbjct: 276 GDDKGLVLPYKLAPVQVIIVPIPSDNYDEIIEYSNGIKSKLMEIGIRCQIDNSDYTPGYK 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN---YASH 440
           F   ++ G P+++ +G + V+D  + I  R    +  + LEE+ N   Y   
Sbjct: 336 FNEWEMRGVPVRIEIGKREVNDKTLTISLRTRKKKIKIELEEISNMYQYLKE 387


>gi|325269446|ref|ZP_08136063.1| proline--tRNA ligase [Prevotella multiformis DSM 16608]
 gi|324988367|gb|EGC20333.1| proline--tRNA ligase [Prevotella multiformis DSM 16608]
          Length = 493

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/414 (15%), Positives = 137/414 (33%), Gaps = 52/414 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG      P L     L  E+     + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQAQLDRMFKETGVQNAYFPLLIPKSFLSREAEHVKGFAKECAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +          ++    + E              
Sbjct: 96  TH-----------------------YRLKATEDGNGVEVDPNAKLEEELIIRPTS----- 127

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI-PMRAESGPIGGDLSHEFIVLAD 215
                    T +   HS+  + +   +  + +  +        +        H      +
Sbjct: 128 ---ETIIWNTYKNWIHSWRDLPLMCNQWCNVMRWEMRTRPFLRTSEFLWQEGHTAHATRE 184

Query: 216 TGETQVFCS-KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             E +     + + DF                  V+  T  +A   D +         E 
Sbjct: 185 EAEKEAQTMLRVYADFAEKWLAVPVV------QGVKSETERFAGALDTYT-------IEA 231

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G   + G  ++     T+   D K  YV   S+G+ + R++ A+I +  D
Sbjct: 232 MMQDGKALQSGTSHFLGQNFAKSFDVTYLNKDNKPEYVWATSWGV-STRLIGALIMTHSD 290

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGS 390
             G++ P  +AP ++++I I   ++  ++  EK+      L  +G  V +DD   ++ G 
Sbjct: 291 DNGLVLPPRIAPIQVAVIPIFKGEEQLKELSEKLQPVIDDLRSLGITVKYDDSDNKRPGF 350

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +FA  +L G P+++ +G + + ++ +E+  R T  +E +S + ++        +
Sbjct: 351 KFADYELKGVPVRLAMGGRDLENNTIEVMRRDTLEKESVSFDGIVGRVKSLLDD 404


>gi|325297765|ref|YP_004257682.1| Prolyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
 gi|324317318|gb|ADY35209.1| Prolyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
          Length = 496

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 160/430 (37%), Gaps = 84/430 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG +    P L     L  E+   + + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQHQLDTMFKETGHVNAYFPLLIPKSYLSREAEHVEGFAKECAVV 95

Query: 97  AD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                               + ++ +I  PT E ++   +++ I SYR+LP    Q    
Sbjct: 96  THYRLKNAEDGSGVIVDPAAKLEEELIIRPTSETIIWSTYKNWINSYRDLPILCNQWANV 155

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E+R R  + R+ EFL ++ ++   T E ++    KM   Y                 
Sbjct: 156 VRWEMRTRLFL-RTAEFLWQEGHTAHATREEAEAEAQKMLHVY----------------- 197

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                GD + +++                              I  + S  E++      
Sbjct: 198 -----GDFAEKYMA--------------------------VPVIKGVKSANERFAG---- 222

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                   L     E      + ++ G   + G  ++   +  F   + K  YV   S+G
Sbjct: 223 -------ALDTYTIEGLMQDGKALQCGTSHFLGQNFAKAFNVQFVDKNNKLDYVWATSWG 275

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKV 375
           + + R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +      E I  +L  +
Sbjct: 276 V-STRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKLIDAKVEGIVNKLRAM 334

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +D+   ++ G +FA  +L G P+++ +G + + ++ +E+  R T  +E  S + +
Sbjct: 335 GVTVKYDNADNKRPGFKFADYELKGVPVRLAMGGRDLENNTIELMRRDTLEKETRSCDGI 394

Query: 435 INYASHRFSN 444
             Y  +    
Sbjct: 395 EEYVKNLLEE 404


>gi|281344737|gb|EFB20321.1| hypothetical protein PANDA_008733 [Ailuropoda melanoleuca]
          Length = 1495

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 124/424 (29%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
             G Y   P      +++      E  + G      P   S   L  E      +  E+  
Sbjct: 1027 SGCYILRPWAYSIWESIKDFFDAEIKKLGVENCYFPMFVSQGALEKEKTHIADFAPEVAW 1086

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1087 VTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLR 1146

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 1147 TREFLWQEGHSAFATFEEAAEEVLQILDLYAQVYE------------------------- 1181

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +V        
Sbjct: 1182 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTLEVFISA---- 1214

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+     + G  +S      F+                G   R +  + 
Sbjct: 1215 -------SGRAIQGATSHHLGQNFSKMFEIIFEDPKTPGEKQFAYQNSWGLTTRTIGVMT 1267

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIKAHD-------QVCRDACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I     +       +     C     RL  V   V  D
Sbjct: 1268 MVHGDNMGLVLPPRVASVQVVVIPCGITNALSEEDREALIAKCNDYRKRLLSVNIRVRVD 1327

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +     V ++ R TG +  ++  E       
Sbjct: 1328 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVADNEAETKLHA 1386

Query: 441  RFSN 444
               +
Sbjct: 1387 LLED 1390


>gi|311898556|dbj|BAJ30964.1| putative prolyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 470

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 145/412 (35%), Gaps = 67/412 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +     + GA     P       L  E+   + +  E+  +     K
Sbjct: 41  PYGYGLWERMQQEMDARIKKAGAQNAYFPMFIPQSYLTKEAEHVEGFAPELAVVTHGGGK 100

Query: 103 AMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E ++ + F   ++S+R+LP    Q     R ELRPR   +R+ EFL +
Sbjct: 101 ELEEPVVVRPTSETIINEYFSKWVQSHRDLPLLINQWANVVRWELRPRV-FLRTTEFLWQ 159

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T                             RA +  I  D+  +F+       
Sbjct: 160 EGHTAHAT-------------------------YEDARAYASRIHTDVYGDFMTNV---- 190

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                                D ++   +  E++       +            E     
Sbjct: 191 ------------------LGIDVVLGRKTAKERFAGAINTLTL-----------EGMMGD 221

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +++G     G  ++   + T++    +  +V   S+G+ + R+V  +I S  D  G+
Sbjct: 222 GKALQMGTSHELGQNFAKAFNTTYQLQGAEREHVWQTSWGV-STRMVGGLIMSHGDDNGL 280

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADL 397
             P  +A  +  ++ IK  D        +I A+L   G  V  DD  +   G +    +L
Sbjct: 281 RVPPRLAAVQAVVLAIKGED-AVLAKVREIGAQLEAAGVRVVVDDRTDTPFGRRAVDWEL 339

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            G PL++ VG + +      +  R+ G +E +S++ +          ++  L
Sbjct: 340 KGVPLRIEVGPRDLEAGTAMLVRRIAGGKEPVSVDSLAAIVPGILEEDQAQL 391


>gi|329764876|ref|ZP_08256467.1| prolyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329138662|gb|EGG42907.1| prolyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 480

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 140/419 (33%), Gaps = 71/419 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G+    P G    +++ +   E+ ++ G     +P L    L   E   +  +  E+  +
Sbjct: 37  GLIVLRPDGYSIWESLRSTFDEKFSKNGIRNGFLPILIPESLLGKEKKHFAGFNPEVFWV 96

Query: 97  ADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               +      +   PT E +   ++   I+S+R+LP          R E++     +R+
Sbjct: 97  THSGENEVGDRLALRPTSETLAYTMYSKWIQSWRDLPLKINFWNTALRAEIKATKPFLRT 156

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL                                                   H    
Sbjct: 157 SEFL-----------------------------------------------WQEGHTVHA 169

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           + +  E +V    +     +  E      I    S  E++      T+            
Sbjct: 170 VQEEAEREVMKILEIYKKTVEDELA-IPVITGKKSEKEKFVGAVYTTTM----------- 217

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + +++G   + G  +S+P    F   D  + +    S+G+ + R++ A+I   
Sbjct: 218 ESIMPDGKALQMGTSHFLGQNFSIPFEVKFADKDNVEQFAWQTSWGV-SWRLIGAMIMVH 276

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGE-QI 388
            D KG++ P  VAP ++ ++ I   D           +I  +L      V  DD  E   
Sbjct: 277 GDDKGLVLPPKVAPIQVVIVPIYKSDDARNIVFPKLNEIKEQLETKKIRVHVDDRNELTP 336

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV--INYASHRFSNN 445
           G +F   +L G PL++ +G K +   ++ +  R    +  +   E+  I         +
Sbjct: 337 GYKFNDWELKGVPLRIEIGPKDIEKQQIVLAKRYNREKISLGFNEIERIGTILEEIQKD 395


>gi|325954344|ref|YP_004238004.1| prolyl-tRNA synthetase [Weeksella virosa DSM 16922]
 gi|323436962|gb|ADX67426.1| Prolyl-tRNA synthetase [Weeksella virosa DSM 16922]
          Length = 492

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 153/439 (34%), Gaps = 91/439 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKE---- 92
           G     P G    + + A + +    TG      P       +  E    + + KE    
Sbjct: 32  GCMVIKPYGYAIWEKIQAELDKRFKETGHQNAYFPIFVPRSYFEAEEKNAEGFAKECAVV 91

Query: 93  ---------------MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                          M+    + ++ +I  PT E ++   +++ I+SYR+LP    Q   
Sbjct: 92  THYRLKNDESTPGKLMVDPEAKLEEELIVRPTSEAIIWSTYKNWIQSYRDLPILINQWAN 151

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E+R R   +R+ EFL                                         
Sbjct: 152 VVRWEMRTRL-FLRTTEFL----------------------------------------- 169

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF--DDIISLNSIVEQWTAP 255
                      E      T E  +  S+  +D              +    +  E++   
Sbjct: 170 ---------WQEGHTAHATKEEAISESRQMLDVYTEVVENHMAIPVVRGCKTPSERFAG- 219

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                            E      + ++ G   + G  ++      F   +GK  YV   
Sbjct: 220 ----------AEETYTIEAMMQDGKALQAGTSHFLGQNFAKAFDVKFTTNEGKQDYVWAT 269

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARL 372
           S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I   ++      +   +I   L
Sbjct: 270 SWGV-STRLMGALIMTHSDDYGLVLPPKIAPIQVVIVPIFRSEEQLIQVSEVANRIKNEL 328

Query: 373 SKVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             +G  V +DD  E+   G +FA  +L G P+++ +G K + +++VEI  R T  +  + 
Sbjct: 329 HSIGISVKFDD-DEKTKPGWKFAEYELKGVPVRIAIGPKDLENNQVEIARRDTLEKSTIP 387

Query: 431 LEEVINYASHRFSNNRPVL 449
           ++ + +Y  +   + +  L
Sbjct: 388 MDGISSYVENLLVDIQENL 406


>gi|303237443|ref|ZP_07324009.1| proline--tRNA ligase [Prevotella disiens FB035-09AN]
 gi|302482393|gb|EFL45422.1| proline--tRNA ligase [Prevotella disiens FB035-09AN]
          Length = 493

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 82/452 (18%), Positives = 156/452 (34%), Gaps = 64/452 (14%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTG 65
           L+E  + AE  S     L+++  +  Q S   G     P G    + + A + +    TG
Sbjct: 5   LKELTKRAENYSQWYNDLVIKADLAEQ-SPVRGCMVIKPYGYAIWEKMQAQLDKMFKETG 63

Query: 66  AIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           A     P L     L  E+     + KE   +                          + 
Sbjct: 64  AQNAYFPLLIPKSFLSREAEHVKGFAKECAVVTH-----------------------YRL 100

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
             N      ++    + E               ++      +     ++Y     SY  +
Sbjct: 101 RSNEEGNAVEVDPSAKLE---------------EELIIRPTSETIIWNTYKNWIQSYRDL 145

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     MR E        + EF+     G T     ++ +D          D    
Sbjct: 146 PLMCNQWCNVMRWEMRTRPFLRTSEFL--WQEGHTAHATREEAVDEAKTMLKVYAD---- 199

Query: 245 LNSIVEQWTA-PYAATSDVHNEKLFDSL----PENKRVSARGIEVGHIFYFGTKYSLPMS 299
                EQW A P        NE+   +L     E      + ++ G   + G  ++    
Sbjct: 200 ---FAEQWLAIPVVQGVKSENERFAGALDTYTIEAMMQDGKALQSGTSHFLGQNFAKSFD 256

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            TF   + K  YV   S+G+ + R+V A+I +  D  G++ P  +AP ++ ++ I    +
Sbjct: 257 VTFLNKENKPEYVWATSWGV-STRLVGALIMTHSDDNGLVLPPKIAPIQVVIVPIFKGAE 315

Query: 360 VCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                 EK+      L   G  V +D+   ++ G +FA  +L G P+++ +G + + ++ 
Sbjct: 316 QLAAITEKLQPVINELRAKGISVKFDNADNKRPGFKFAEYELKGVPVRLAMGGRDLENNT 375

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +EI  R T  +E++S + ++          + 
Sbjct: 376 IEIMRRDTLEKENVSFDGIVERIEKLLEEIQE 407


>gi|45190586|ref|NP_984840.1| AEL021Cp [Ashbya gossypii ATCC 10895]
 gi|44983528|gb|AAS52664.1| AEL021Cp [Ashbya gossypii ATCC 10895]
          Length = 670

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/428 (17%), Positives = 140/428 (32%), Gaps = 73/428 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
            G Y   P      + +      +    G   +  P   S   L  E    + +  E+  
Sbjct: 197 SGCYILKPASYCIWERIQEWFNGKIRSMGVQNVCFPMFISSRALEKEKDHIEGFAPEVAW 256

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        ++ +   PT E  M   F   ++SYR+LP  + Q     R E +     +R
Sbjct: 257 VTKAGSSDLEEPIAIRPTSETAMYPFFAKWVQSYRDLPLKYNQWTSVVRWEFKHPQPFLR 316

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT E                                    + + E +
Sbjct: 317 TREFLWQEGHTAHLTKE------------------------------------EATDEVM 340

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            + D  E                E      +    +  E++      TS      +   +
Sbjct: 341 QILDHYEQVYV------------ELLAVPVVKGTKTENEKFAGADFTTS------VEGYI 382

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIG-AMRVVAAVI 329
           P     + RGI+     + G  +S   +   +   G  H          G + R +  ++
Sbjct: 383 P----QTGRGIQGATSHHLGQNFSKMFNICVENPLGPQHPKVHAYQNSWGLSTRSIGVMV 438

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIK---AHDQVCR----DACEKIYARLSKVGCDVFWD 382
            +  D KG++ P  VA  ++ ++ +       +  R    D+   I  RL K G  V  D
Sbjct: 439 MTHSDNKGLVIPPRVAQHQVVILPVGITAKTKEDVRSKIHDSARAIENRLHKAGIRVLGD 498

Query: 383 DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                  G +FA  +L G PL++  G K +  ++V    R  G +  + L ++       
Sbjct: 499 YADNYTPGWKFAQYELKGVPLRLEFGPKDMEKAQVTAVRRNDGAKISVPLADLEERIPQI 558

Query: 442 FSNNRPVL 449
                 +L
Sbjct: 559 LDEMHQLL 566


>gi|108803928|ref|YP_643865.1| prolyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
 gi|123069165|sp|Q1AX25|SYP_RUBXD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|108765171|gb|ABG04053.1| prolyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
          Length = 476

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 139/418 (33%), Gaps = 69/418 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G ++  P G    + + A +      TG +    P L     L  E+   + +  E   +
Sbjct: 36  GTFAIRPYGFAIWERIQADLDARFKATGHVNAYFPLLIPESYLTKEAEHVEGFAPECAWV 95

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D  ++ +   PT E ++ D +R  I SYR+LP    Q     R E+  R  + R+
Sbjct: 96  TVGGDDELEERLAIRPTSESIICDFYRKWIHSYRDLPVLINQWCNVLRWEMVTRPFL-RT 154

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M   Y                       D  +E + 
Sbjct: 155 AEFLWQEGHTVHATAEEAREEALRMLNVY----------------------RDCFYEVL- 191

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                              IP               VE +T                   
Sbjct: 192 ------------------AIPVLTGMKSPSERFAGAVETFTC------------------ 215

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      R ++       G  ++     TF   + +  +    S+G  + R + A+I   
Sbjct: 216 EGLMGDGRALQAATSHDLGQNFARAFDITFLDENQERVHPYQTSWGF-STRTIGALILVH 274

Query: 333 HDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIG 389
            D +G+  P  +AP +  ++ I    +    R   E ++  L++ G     D D     G
Sbjct: 275 GDDRGLRLPPKLAPTQAVVVPIWRGKNKGEVRREAEALHRELAEAGLRAEADLDEEHSPG 334

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            +F   +L G P++V +G K +   +  +  R TG +E +                + 
Sbjct: 335 WKFNEHELRGVPVRVELGPKDIEKGQAVLVRRDTGEKEFVGRGAAARRLVELMDEIQQ 392


>gi|261880625|ref|ZP_06007052.1| proline-tRNA ligase [Prevotella bergensis DSM 17361]
 gi|270332666|gb|EFA43452.1| proline-tRNA ligase [Prevotella bergensis DSM 17361]
          Length = 493

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 136/412 (33%), Gaps = 48/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG      P L     +  E+     + KE   +
Sbjct: 36  GCMIIKPYGYAIWEKMQAALDGMFKATGVQNAYFPLLIPKSFFAKEAEHVAGFAKESAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +          ++  + + E              
Sbjct: 96  TH-----------------------YRLKGTEDGKGIEVDPEAKLE-------------- 118

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            ++      +     ++Y     SY  +          MR E        + EF+     
Sbjct: 119 -EELIIRPTSETMIWNTYKNWIQSYRDLPILCNQWCNVMRWEMRTRPFLRTSEFL--WQE 175

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++  +           D       V       + T       L     E   
Sbjct: 176 GHTAHATEQEAQEEARKMLKVYA-DFAEKWMGVPVVQGVKSETERFAG-ALDTYTIEAMM 233

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++     TF   D K  YV   S+G+ + R++ A+I    D  
Sbjct: 234 QDGKALQSGTSHFLGQNFAKSFDVTFLNKDNKPEYVWATSWGV-STRLMGALIMVHSDDN 292

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ +I I  +++       K+     + + +G  V +DD   ++ G +F
Sbjct: 293 GLVLPPKLAPIQVVIIPISRNNEQLEAISAKLKPVIDKFASLGISVKYDDSDNKRPGFKF 352

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  +L G P+++++G++ + +  +EI  R T  +E++S + ++        +
Sbjct: 353 ADYELKGVPVRLVMGARDLENGTIEIMRRDTLEKENVSFDGIVERVQTMLDD 404


>gi|50419495|ref|XP_458274.1| DEHA2C13706p [Debaryomyces hansenii CBS767]
 gi|49653940|emb|CAG86351.1| DEHA2C13706p [Debaryomyces hansenii]
          Length = 682

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 134/424 (31%), Gaps = 75/424 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +         + G      P   S+  L  E    + +  E+  
Sbjct: 209 SGCYILRPNSYSVWETIQEWFNLRIKKMGVQNSYFPMFVSSRVLEKEKDHIEGFAPEVAW 268

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D+ +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 269 VTRAGNSELDEHIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLR 328

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT E +     ++   Y  I+                          
Sbjct: 329 TREFLWQEGHTAHLTKESAAEEVEQILDLYAGIYE------------------------- 363

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      +    +  E++    Y  T +    +    
Sbjct: 364 -----------------------ELLAVPVVKGKKTENEKFAGGDYTTTCEGFIAE---- 396

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAV 328
                  + RGI+     + GT +S   + + +  +G D             + RV+  +
Sbjct: 397 -------TGRGIQGATSHHLGTNFSKMFNISVENPEGADKPRVHAFQNSWGLSTRVIGVM 449

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFW 381
           + +  D KG++ P  VA  ++ +I +           +   D    I   L +    V  
Sbjct: 450 VMTHSDNKGLVLPPRVAQTQVVVIPVGLTAKTPDEQRKAINDGAANIEHILKQTDVRVTG 509

Query: 382 DDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D       G +F+  +L G PL++  G K ++  +V    R    +  + L E+      
Sbjct: 510 DYRDNYSPGWKFSNWELKGTPLRLEFGPKDLASEQVTAVRRDNSQKYSVKLNELEKRIPE 569

Query: 441 RFSN 444
               
Sbjct: 570 ILQE 573


>gi|165971562|gb|AAI58467.1| LOC100145057 protein [Xenopus (Silurana) tropicalis]
          Length = 674

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/450 (15%), Positives = 135/450 (30%), Gaps = 77/450 (17%)

Query: 13  ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E  ++  +     +++ ++ MI  +   G Y   P      + +     +E  + G    
Sbjct: 179 EAKKEENLPDWYSQVITKSEMIEYYDVSGCYVLRPWAFAIWEAIKEFFDKEIKKLGVENC 238

Query: 70  SVPTLQS-ADLWVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKS 124
             P   S A L  E      +  E+  +       +       PT E VM   +   ++S
Sbjct: 239 YFPMFVSQAALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 298

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+LP    Q     R E +     +R+REFL ++ ++   T       Y +     L+I
Sbjct: 299 HRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFAT-------YEEAAEEVLQI 351

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                     + A     G     E                                   
Sbjct: 352 LDLYARVYEDLLAIPVVKGRKTEKEKFA-------------------------------- 379

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                      Y  T +                S+R I+     + G  +S      F+ 
Sbjct: 380 --------GGDYTTTVEAFISA-----------SSRAIQGATSHHLGQNFSKMFEIVFED 420

Query: 305 ADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------A 356
                          G + R + A+     D  G++ P  VA  ++ +I           
Sbjct: 421 PKSPGLKQYAYQNSWGLSTRTIGAMTMVHADNIGMVLPPRVACVQVIIIPCGITNTLSEE 480

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                   C++   RL  V      D       G +F   +L G P+++ VG + + + +
Sbjct: 481 DKDALLKKCDQYLKRLLNVDVRARADVRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNKQ 540

Query: 416 -VEIKHRLTGIREDMSLEEVINYASHRFSN 444
            V ++ R  G ++ +S ++           
Sbjct: 541 FVAVR-RDNGEKQTISEDQAETRLKEILEE 569


>gi|229823364|ref|ZP_04449433.1| hypothetical protein GCWU000282_00662 [Catonella morbi ATCC 51271]
 gi|229787139|gb|EEP23253.1| hypothetical protein GCWU000282_00662 [Catonella morbi ATCC 51271]
          Length = 479

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 63/451 (13%), Positives = 145/451 (32%), Gaps = 86/451 (19%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM----LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
            SK++L  +Q+           LM    +R  MI +         P G +  +++   + 
Sbjct: 8   FSKWYLQTIQQA---------DLMDYSPVRGCMIFK---------PDGYEIWEHIQKAMD 49

Query: 59  EEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                 G      P L     +  E    + +  E+  + +   + +             
Sbjct: 50  ARFKEEGIRNAYFPMLIPESFFNKEKDHIEGFSPELPWVTEAAGEKLEERLALRP----- 104

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
                                                           +      +++  
Sbjct: 105 -----------------------------------------------TSETIIGDAFSNW 117

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             SY  +   +   +   R E   +    + EF+     G T     ++ +D  +     
Sbjct: 118 IQSYRDLPLEINQWANVFRWEKKTLPFLRTSEFL--WQEGHTAHADGQEALDRTMRMLQI 175

Query: 238 DFDDIISL--NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             + +  +    +V+    P    S+     +     E      + ++ G   Y GTK++
Sbjct: 176 YKEVVEGVLAVPVVDGEKTP----SERFAGAVSTFSIEAMMQDGKAVQAGTSHYMGTKFA 231

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                 +   D +  Y    S+G+ + R++ A+I +  D KG++ P +VAP ++  + + 
Sbjct: 232 EAFDIRYLNTDNEHVYAHTSSFGV-STRLIGAMIMTHGDDKGLVLPPAVAPTQVVFVPVG 290

Query: 356 A--HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
               +    D   ++ A+L   G     DD     G +F   +L G P+++  G + + +
Sbjct: 291 PWQKNPAILDKIHELQAQLKAAGIRCRVDDSNNSPGFKFNEWELRGVPVRIECGPRDLEN 350

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++V +K R    +  +  +  +       ++
Sbjct: 351 AQVMMKARDLDDKVAVPFDNFLASVQAELAS 381


>gi|163786094|ref|ZP_02180542.1| prolyl-tRNA synthetase [Flavobacteriales bacterium ALC-1]
 gi|159877954|gb|EDP72010.1| prolyl-tRNA synthetase [Flavobacteriales bacterium ALC-1]
          Length = 492

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/416 (15%), Positives = 134/416 (32%), Gaps = 45/416 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G     P G    + + A +      TG +    P      L+                 
Sbjct: 33  GCMVIKPYGYAIWEKMQAELDRMFKETGHVNAYFPLFVPKSLFEA--------------- 77

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        +E                         K  +EL  R           
Sbjct: 78  ----EEKNAEGFAKECAVVTHYRLENDPDKEGKLRVDPNAKLEEELIVRP---------- 123

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                   +     ++Y     SY  +   +   +  +R E        + EF+     G
Sbjct: 124 -------TSEAIIWNTYKGWIQSYRDLPILINQWANVVRWEMRTRLFLRTAEFL--WQEG 174

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            T      + ++      N   +   + N +           S+           E    
Sbjct: 175 HTAHATKVEALEEAEQMNNVYAE--FAENFMAIPVIKGVKTESERFAGAEETFCIEALMQ 232

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + ++ G   + G  ++      F   +GK  +V   S+G+ + R++ A+I +  D KG
Sbjct: 233 DGKALQAGTSHFLGQNFAKAFDVKFTNNEGKLDHVWATSWGV-STRLMGALIMTHSDDKG 291

Query: 338 IIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVGCDVFWDDMG-EQIGSQFA 393
           ++ P ++APF++ ++ I  +D+           I   L  +G    +D     + G++FA
Sbjct: 292 LVLPPNLAPFQVVIVPIYKNDEQFDLISKKANTISKELKALGVSCKFDKRSTHRPGAKFA 351

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             +L G PL++ +G K + ++ VE+  R T  +E + ++++           +  L
Sbjct: 352 QHELQGVPLRIAIGPKDLENNTVELARRDTLTKEIVQMDDLTQTIKGLLEKIQNEL 407


>gi|148887019|sp|Q0SAY4|SYP2_RHOSR RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
          Length = 479

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/418 (16%), Positives = 150/418 (35%), Gaps = 70/418 (16%)

Query: 28  RTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           + G++ +  +KG     P G +  + + + +      TG      P L     L  E+  
Sbjct: 25  KAGLVDRGPAKGTMVIRPYGYRLWELLQSELDRRIKDTGHENAYFPLLIPESYLGREAEH 84

Query: 86  YDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +     K     ++  PT E ++ ++    I S+R+LP    Q     R 
Sbjct: 85  VEGFSPELAVVTHVGGKVLEEPLVVRPTSETIIGEMMAKWISSHRDLPLLLNQWANVVRW 144

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           ELRPR   +R+ EFL ++ ++  +                                    
Sbjct: 145 ELRPRM-FLRTTEFLWQEGHTAHVDEA--------------------------------- 170

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                  E ++  D                +  E      +    +  E++    A  + 
Sbjct: 171 ---SARRETMLALDIYH------------EVARELAAIPVVPGEKTPGERFAGAVATYT- 214

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                      E      R ++ G   Y G K++      F    G++      S+G+ +
Sbjct: 215 ----------IEGMMRDGRALQSGTSHYMGIKFASAFDIRFTSETGREELCHTTSWGM-S 263

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD-ACEKIYARLSKVGCDVF 380
            R++  ++ +  D KG+++P  +AP ++ ++ I     V  + A +++  RL  VG    
Sbjct: 264 TRMIGGIVMTHGDDKGLVFPPRLAPHQVVIVPITRGGNVAVEGAADELAHRLRSVGVRTH 323

Query: 381 WDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKV-EIKHRLTGIREDMSLEEVIN 436
            D       G ++   ++ G P+++ +G + + D  V  +K      ++ + ++ +  
Sbjct: 324 VDARPHLTPGFKYNEWEMRGVPVRLELGPRDLEDGTVMMVKRLGDDGKQAVPIDSLPE 381


>gi|71894504|ref|YP_278612.1| prolyl-tRNA synthetase [Mycoplasma synoviae 53]
 gi|114152218|sp|Q4A5S0|SYP_MYCS5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71851292|gb|AAZ43901.1| prolyl-tRNA synthetase [Mycoplasma synoviae 53]
          Length = 482

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 153/414 (36%), Gaps = 68/414 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEML 94
           +KG   + P      +N+   + E   + G   +  P      L+  E      +  E+ 
Sbjct: 33  AKGTIIYKPNSYGIWENIQKTLNEVFKKHGVENIYAPLFIPESLFKIEKEHVQGFNPELA 92

Query: 95  RLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            +    +K +    I  PT E +  ++F+  I SY +LP  + Q     R E       +
Sbjct: 93  TVTQVGNKKLSEKLIVRPTSEVIFANLFKEDINSYNDLPKIYNQWANVVRWEKV-TKPFL 151

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R+REFL ++ ++                                    S       + + 
Sbjct: 152 RTREFLWQEGHTSH---------------------------------SSAEEARSFTVKM 178

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I   +         K+++  P+         +    +  E++    +  +          
Sbjct: 179 IKEYEK------FLKNYLAIPV---------VSGKKTCNEKFAGAVSTYT---------- 213

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             E      + ++ G   Y G K+S P   +FK  + ++ +V   S+G+ + R++ A+I 
Sbjct: 214 -VEAMMKDGKALQTGTSHYLGQKFSRPYGISFKNKNNEEDFVYQTSWGV-STRLLGAIIM 271

Query: 331 SSHDGKGIIWPDSVAPFKISLI-NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              D +G+I P  +AP K+ ++  +   +        KIY  LSK    V  D   +  G
Sbjct: 272 VHGDNRGVIIPPKIAPIKVDILEILADKNPEVSKVANKIYKELSKK-LSVRLDASNKSPG 330

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + + +++ G PL++ VG + + ++ V    R T  +  + LE V    ++   
Sbjct: 331 FKASQSEIEGVPLRIEVGPRDLENNCVTFVRRDTLEKTKVDLENVKKEVNNYLK 384


>gi|194336185|ref|YP_002017979.1| prolyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
 gi|259511610|sp|B4SG51|SYP_PELPB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|194308662|gb|ACF43362.1| prolyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 481

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 148/418 (35%), Gaps = 69/418 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG +    P       +  E+   + +  E   +
Sbjct: 33  GCMDIRPNGYAIWEKMQAALDRMFKETGHVNAYFPLFIPESFIAKEAEHIEGFAPECAVV 92

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E ++   ++  I+SYR+LP    Q     R E+R R  + R+
Sbjct: 93  THGGGEELAEKLYIRPTSETIIWSSYKKWIQSYRDLPILINQWANVVRWEMRTRLFL-RT 151

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++    PE S+    +M   Y                           E++ 
Sbjct: 152 TEFLWQEGHTAHANPEESQEEVLRMINVYKTFA----------------------EEYMA 189

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +                            I+   +  E++              +     
Sbjct: 190 M--------------------------PVIMGKKTDNEKFAG-----------AVDTWCI 212

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E     ++ ++ G     G  ++      F+  DG   YV   S+G+ + R++ A+I + 
Sbjct: 213 EAMMQDSKALQAGTSHNLGQNFAKAFDCQFQTKDGVLDYVWATSWGV-STRLIGALIMAH 271

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGS 390
            D +G++ P  +A  ++ +I I   D     +    +   L+K G   F D   +   G 
Sbjct: 272 SDDRGLVLPPKLATRQVVIIPILRGDKAAVIERANALAQELNKNGIPSFVDSSEQNSPGW 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-VINYASHRFSNNRP 447
           +FA  +L G P+++ +G + +         R T  + +++L+E + +  S   +  + 
Sbjct: 332 KFAEYELQGIPIRIELGPRDIEKGICIAARRDTLEKTELALDETLPDQISEILNTIQE 389


>gi|116754929|ref|YP_844047.1| prolyl-tRNA synthetase [Methanosaeta thermophila PT]
 gi|121694244|sp|A0B9N3|SYP_METTP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116666380|gb|ABK15407.1| prolyl-tRNA synthetase [Methanosaeta thermophila PT]
          Length = 478

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 91/447 (20%), Positives = 168/447 (37%), Gaps = 81/447 (18%)

Query: 10  ILQENPRDAEIAS--------HKLMLRTGMI---HQHSKGIYSWLPLGQKALDNVNAIIR 58
           + ++  RDA++          H+L LR+  I       KG+  W P G     +V  II+
Sbjct: 1   MTKKEERDAKLPPKSNFSEWYHEL-LRSAEIVDVRYPVKGMSVWYPFGFALRSHVYQIIK 59

Query: 59  EEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEV 113
           E  +     E   P L    +   E+     +  E+  +     D  D  +   PT E  
Sbjct: 60  ELLD-VDHYETQFPLLIPETEFMKEAEHIKGFEDEVYWVTHGGRDPLDIKLALRPTSETA 118

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
           +  + +  I+S+ +LP   YQI   FR E +    ++R RE                + +
Sbjct: 119 IYPMLKLWIRSHADLPLRIYQIVNTFRYETKHTRPLIRLREITSFKE--AHTAHATWEEA 176

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
             ++ ++  R        +IP      P                                
Sbjct: 177 AMQVEIAIQRYIEFYRRLAIPCLVSKRPSWDKFP-------------------------- 210

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                               A Y+   DV        +P+      R ++VG     GT 
Sbjct: 211 -------------------GADYSIALDVI-------MPDG-----RTLQVGTAHLLGTN 239

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           ++     T++   G+  YV    YGI + R +AA+I    D KG++ P  VAP ++ ++ 
Sbjct: 240 FAKTYEITYEDEHGEQRYVNQTCYGI-SERCIAALIAVHGDDKGLVLPWRVAPVQVVIVP 298

Query: 354 IKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           I   + +   + C  I + L+     V  DD  E+ G++F   ++ G P+++ +G + + 
Sbjct: 299 IIFGEREPIIEVCRSIASTLAGRNIRVRLDDGDERPGAKFYKWEMRGVPVRIEIGPRDIK 358

Query: 413 DSKVEIKHRLTGIREDMSLEE-VINYA 438
           +  V I  R  G+R+ + ++E +++  
Sbjct: 359 NGVVTIVRRD-GVRKTLPMDERLVDAI 384


>gi|73951035|ref|XP_857273.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 5
           [Canis familiaris]
          Length = 687

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 109/334 (32%), Gaps = 34/334 (10%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 382 KMMKTWEKFQEEAKNRDHRKVGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLMDFIREE 439

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +R    E+  P + ++ LW  SG +  Y + M    D         P +      +F  
Sbjct: 440 YHRRNFTEVLSPNMFNSKLWETSGHWQHYSENMFTF-DIEKDTFALKPMNCPGHCLMFAH 498

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P       +  R+EL     G+ R R F   DA+ F    +  +        
Sbjct: 499 RPRSWREMPVRLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTVEQ-IEEEIKGCLQ 557

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G                    F +   T         +  D          
Sbjct: 558 FLQSVYSTFGFS------------------FQLNLSTRPENFLGEVELWDEAEKQLQNSL 599

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            +      +     A Y    D+   K+ D++    + +   ++    F    +++L   
Sbjct: 600 VEFGKPWKMNPGDGAFYGPKIDI---KIKDAIGRYHQCATIQLD----FQLPIRFNLTY- 651

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
             F   D K + V +    +G++  + A++  ++
Sbjct: 652 --FDDGDDKRNPVIIHRAILGSVERMIAILSENY 683


>gi|269115191|ref|YP_003302954.1| Prolyl-tRNA synthetase [Mycoplasma hominis]
 gi|268322816|emb|CAX37551.1| Prolyl-tRNA synthetase [Mycoplasma hominis ATCC 23114]
          Length = 477

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/417 (16%), Positives = 142/417 (34%), Gaps = 70/417 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + PL     +N+ A +  E  + G   + +P L    L   E    + +  E+  +
Sbjct: 35  GCIIFKPLAYSIWENIQAKMDIEFKKRGVQNVYLPLLIPESLLQKEKNHVEGFNPELATV 94

Query: 97  ADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
            +   K         PT E +  D+F++ + SY +LP  + Q     R E +     +R+
Sbjct: 95  TEVGGKKLAEKFFIRPTSETLFADLFKNEVSSYNDLPIIYNQWVNVLRWE-KTTNPFLRT 153

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ +                                     +     + + EF  
Sbjct: 154 REFLWQEGH-------------------------------------TIHSSSEEAIEFAK 176

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                   V             EN     +    +  E++                    
Sbjct: 177 TMHKVYKDVI-----------EENLAIPVVEGCKTDHEKFAG-----------ADITYTL 214

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G   Y G  ++     TFK  + K       S+G    R++ A+I + 
Sbjct: 215 ESMMKDGKALQSGTSHYLGQNFTKAFDITFKNNENKLINPYGTSWGT-TTRLIGALIMTH 273

Query: 333 HDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            D +GII P  +A  ++ ++ I  + D+       ++   L         D   +  G +
Sbjct: 274 GDDRGIIIPPKIARTQVDILEIFNSKDERVHKLALELKDALLAKNIVANIDSSNKGPGFK 333

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE---VINYASHRFSNN 445
            A +++ G PL++ +G K + ++ V    R    +   ++ E   + +    +  +N
Sbjct: 334 AANSEIHGTPLRIEIGPKDIENNSVLFVRRDNLEKITSTIAEAANIASLLLQKIQDN 390


>gi|300712094|ref|YP_003737908.1| prolyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
 gi|299125777|gb|ADJ16116.1| prolyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
          Length = 482

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 72/415 (17%), Positives = 137/415 (33%), Gaps = 68/415 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P       L  E    + +  E+  +
Sbjct: 38  GFIVTRPRGYALWEAIQDRLDGWFKETGVQNAYFPLFIPESYLEREKDVVEGFDPEVAWV 97

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D  ++ +   PT E ++       ++S+R+LP    Q     R E        R+
Sbjct: 98  TQGGHDELEERLAVRPTSESIIAPFLSQWVRSHRDLPLRVNQWCSVVRWEATETKPFFRT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           +EFL ++ ++                                          D   E ++
Sbjct: 158 KEFLWQEGHTAHRD------------------------------------HDDAWDETML 181

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             +  E                   D   I  +     +      A +    E L    P
Sbjct: 182 RLEQYEQVY---------------EDVLAIPVMRGRKPEHDKFPGADTTTTVEALM---P 223

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           + K      ++ G   + G  ++     T+   D ++      S+G+ + R + A+I + 
Sbjct: 224 DGK-----SVQGGTSHHLGQSFAEAFDITYVDEDEEETVAHTTSWGL-SWRAIGALIMTH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQ-IG 389
            D +G++ P +VAP ++ ++ I   +  +   +  E I   L + G  V  DD  E+  G
Sbjct: 278 SDDQGLVLPPTVAPEQVVIVPIWQEENREEVLEYSEGIADDLEEAGFRVELDDRDERNPG 337

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +F   +LLG PL++ +G   V D +V   HR    +     E ++         
Sbjct: 338 FKFNEWELLGTPLRLEIGPHEVEDGEVTAVHRPDSEKSVEGREGIVEAVEGHLET 392


>gi|332655151|ref|ZP_08420892.1| proline--tRNA ligase [Ruminococcaceae bacterium D16]
 gi|332516011|gb|EGJ45620.1| proline--tRNA ligase [Ruminococcaceae bacterium D16]
          Length = 480

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/407 (16%), Positives = 127/407 (31%), Gaps = 58/407 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G++ + P G    +N+ A + +    TG   + +P L    L   E    + +  E    
Sbjct: 40  GVFIYRPYGYAIWENIQAELDKRFKETGHENVYLPMLIPESLLQKEKDHVEGFAPEC--- 96

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                             +      E L
Sbjct: 97  -------------------------------------------------AWVTYGGSEKL 107

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +       +       Y  +  S+  +          +R E          EF+     
Sbjct: 108 EERYCIRPTSETLFCEHYKSIIHSHRDLPKLYNQWCSVLRWEKTSRPFLRHREFL--WQE 165

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++         N   D + ++ ++            +  N        E   
Sbjct: 166 GHTMHATEEEARQETQQMLNIYADFLENVLAMP--VVKGRKTDKEKFNGAEETYTVECMM 223

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   YFG  ++     TF G D + HY    S+G+ + R++  +I +  D  
Sbjct: 224 HDKKALQSGTSHYFGDGFARAFDITFTGKDNQLHYPHQTSWGV-STRMIGGIIMTHGDNN 282

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G++ P  +AP +  +I +  H +   DA   +  RL   G     D   + +G + A  +
Sbjct: 283 GLVLPPRIAPIQAMVIPVAQHKEGVLDAATDLLNRLKAAGIRASMDASDQSMGWKAAQYE 342

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + G PL+V +G K +   +  I  R +G +  + L E+         
Sbjct: 343 MKGVPLRVEIGPKDMEKGQCCICRRDSGEKIFVPLAELETTVPQLLD 389


>gi|110639601|ref|YP_679811.1| prolyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|122966540|sp|Q11Q45|SYP_CYTH3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110282282|gb|ABG60468.1| prolyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
          Length = 491

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 154/445 (34%), Gaps = 95/445 (21%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           +R  MI +         P G    + + A++ +    TG      P       L  E+  
Sbjct: 31  VRGCMIIK---------PYGYSIWEKMQAVLDKMFKETGHSNAYFPLFIPKSYLSKEASH 81

Query: 86  YDSYGKEMLRLAD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            D + KE   +                    + D+ +I  PT E V+ + +++ I+S+R+
Sbjct: 82  IDGFAKECAVVTHYRLKNDENGKGIIVDPEAKLDEELIVRPTSETVIWNTYKTWIQSHRD 141

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP    Q     R E+R R  + R+ EFL ++ ++                         
Sbjct: 142 LPLLINQWANVVRWEMRTRLFL-RTTEFLWQEGHT------------------------- 175

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-FDDIISLN 246
                                     A   E  V   +    +   ++N         + 
Sbjct: 176 ------------------------AHATKQEAIVETEQMMNVYATFAQNFMALPVHRGIK 211

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           S  E++                    E      + ++ G   + G  ++      F   +
Sbjct: 212 SANERFAG-----------AEETYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFASKE 260

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR--DA 364
           G   YV   S+G+ + R++ A+I +  D +G++ P  +AP ++ ++ I    +     +A
Sbjct: 261 GSLEYVWGTSWGV-STRLMGALIMAHSDDEGLVLPPLLAPIQVVIVPIFKTAEQLDLIEA 319

Query: 365 CEK-IYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             K I A L      V +D   +   G +FA  +L G PL+V +G++ + +  VE+  R 
Sbjct: 320 TLKPILAALKAKDISVKFDHSDKYSPGFKFAEYELKGVPLRVAIGARDIENGTVELARRD 379

Query: 423 TGIREDMSLEEVINYASHRFSNNRP 447
           T  +  +  E + +         + 
Sbjct: 380 TKEKTTVPQEGLADTIEKLLQEIQE 404


>gi|154492734|ref|ZP_02032360.1| hypothetical protein PARMER_02371 [Parabacteroides merdae ATCC
           43184]
 gi|154087039|gb|EDN86084.1| hypothetical protein PARMER_02371 [Parabacteroides merdae ATCC
           43184]
          Length = 493

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 67/412 (16%), Positives = 140/412 (33%), Gaps = 48/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +  I+ +    TG +    P L     L  E+   + + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQRILDDMFKETGHVNAYFPLLIPKSFLSKEAEHVEGFAKECAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +   N   T   +    + E              
Sbjct: 96  TH-----------------------YRLKTNHDGTGVVVDPAAKLE-------------- 118

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            ++      +     ++Y     SY  +       +  MR E        + EF+     
Sbjct: 119 -EELIIRPTSETIIWNTYRNWIQSYRDLPILCNQWANVMRWEMRTRLFLRTAEFLWQ--- 174

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                  +++  +         + D       +       +A+       L     E   
Sbjct: 175 EGHTAHATREEAEIEAKKMQGVYADFAENYMAMPVIKGVKSASERFAG-ALDTYTIEAMM 233

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  +      TF   +GK  Y    S+G+ + R++ A+I S  D  
Sbjct: 234 QDGKALQAGTSHFLGQNFGKAFDVTFIDKNGKSDYAWATSWGV-STRLIGALIMSHSDDN 292

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ +I I   ++      EK   I A+L  +G  V +D+   ++ G +F
Sbjct: 293 GLVLPPHLAPIQVVIIPIYRSEEQLAQISEKVNGIVAKLKALGISVKFDNADNKKPGWKF 352

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  +L G P+++ +G + + ++ +E+  R T  +E ++ + +  Y  +    
Sbjct: 353 AEYELKGVPVRLAMGGRDLENNTIEVMRRDTLEKETVTCDNIETYVQNLLEE 404


>gi|282859312|ref|ZP_06268424.1| proline--tRNA ligase [Prevotella bivia JCVIHMP010]
 gi|282587892|gb|EFB93085.1| proline--tRNA ligase [Prevotella bivia JCVIHMP010]
          Length = 493

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 156/445 (35%), Gaps = 56/445 (12%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E  + A+  S     L+++  +  Q +  G     P G    +N+ A + +    TG 
Sbjct: 5   LKELTKRADNYSQWYNDLVVKADLAEQSAVRGCMVIKPYGYAIWENIQAQLDKMFKATGV 64

Query: 67  IEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
                P L     L  E+   + + KE   +                             
Sbjct: 65  QNAYFPLLIPKSFLSREAEHVEGFAKEAAVVTH--------------------------- 97

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
               +     +     E+ P   +                T +   HS+  + +   +  
Sbjct: 98  ----YRLKTKENGGGVEVDPSAKLEEELIIRPTSETIIWNTYKNWIHSWRDLPLMCNQWC 153

Query: 186 HRLGLKSI-PMRAESGPIGGDLSHEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFDDII 243
           + +  +        +        H      +  E +     K + DF             
Sbjct: 154 NVMRWEMRTRPFLRTSEFLWQEGHTAHATKEEAEKEAKLMLKVYADFAEKWLAVPVI--- 210

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                V+  T  +A   D +         E      + ++ G   + G  ++     TF 
Sbjct: 211 ---QGVKSETERFAGALDTYT-------IEAMMQDGKALQSGTSHFLGQNFAKSFDVTFL 260

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ ++ I   ++  + 
Sbjct: 261 NKENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPKIAPIQVVIVPIFKGEEQLQQ 319

Query: 364 ACEKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +K+      L + G  V +D+   ++ G +FA  +L G P+++ +G + + ++ +E+ 
Sbjct: 320 LTDKLQPVIDDLREAGITVKFDNSDNKRPGFKFADYELKGVPVRLAMGGRDLENNTIEVM 379

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
            R T  +E +S + + +Y  +  ++
Sbjct: 380 RRDTLEKESVSFDGIADYVKNLLND 404


>gi|330995811|ref|ZP_08319708.1| proline--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329574541|gb|EGG56106.1| proline--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 493

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 67/412 (16%), Positives = 137/412 (33%), Gaps = 48/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +  ++ ++   TG      P L     L  E+   + + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQRVLDDKFKETGVQNAYFPLLIPKSFLSKEAEHVEGFAKECAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +   N   T   +    + E              
Sbjct: 96  TH-----------------------YRLKTNEDKTGVVVDPAAKLE-------------- 118

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            ++      +     ++Y     SY  +          MR E        + EF+     
Sbjct: 119 -EELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWCNVMRWEMRTRLFLRTAEFL--WQE 175

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++  +           D       V       + T       L     E   
Sbjct: 176 GHTAHATREEAEERAKQMLKVYA-DFAEQYMAVPVVQGVKSETERFAG-ALDTYTIEAMM 233

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  +    +  F   D K  Y    S+G+ + R++ A+I +  D  
Sbjct: 234 QDGKALQSGTSHFLGQNFGKAFNVQFINKDNKLEYAWATSWGV-STRLMGALIMTHSDDN 292

Query: 337 GIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ ++ I  + +      +  E I ARL  +G  V +D+   ++ G +F
Sbjct: 293 GLVLPPKLAPIQVVIVPIYKNAEQLKAIDEKVEGIVARLRALGISVKYDNADNKRPGFKF 352

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  +L G P+++++G + + ++ VE+  R T  +E  + + + +Y       
Sbjct: 353 ADYELKGVPVRLVMGGRDLENNTVEVMRRDTLEKETRTCDGIEDYVKTLLDE 404


>gi|74006040|ref|XP_858912.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 4
            [Canis familiaris]
          Length = 1465

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 67/424 (15%), Positives = 124/424 (29%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
             G Y   P      +++      E  + G      P   S   L  E      +  E+  
Sbjct: 997  SGCYILRPWAYSIWESIKDFFDAEIKKLGVENCYFPMFVSQGALEKEKTHVADFAPEVAW 1056

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1057 VTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLR 1116

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 1117 TREFLWQEGHSAFATFEEAAEEVLQILDLYAKVYE------------------------- 1151

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 1152 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISA---- 1184

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+     + G  +S      F+                G   R +  + 
Sbjct: 1185 -------SGRAIQGATSHHLGQNFSKMFEIIFEDPKTPGEKQFAYQNSWGLTTRTIGVMT 1237

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I     + +  +        C     RL  V   V  D
Sbjct: 1238 MVHGDNMGLVLPPRVASVQVVVIPCGITNALSEEDRDALIIKCNDYRRRLLSVNVRVKVD 1297

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +     V ++ R TG +  ++  E       
Sbjct: 1298 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVADNEAETKLKA 1356

Query: 441  RFSN 444
               +
Sbjct: 1357 ILED 1360


>gi|145220122|ref|YP_001130831.1| prolyl-tRNA synthetase [Prosthecochloris vibrioformis DSM 265]
 gi|259511614|sp|A4SFS0|SYP_PROVI RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|145206286|gb|ABP37329.1| prolyl-tRNA synthetase [Chlorobium phaeovibrioides DSM 265]
          Length = 481

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 137/402 (34%), Gaps = 68/402 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG +    P       +  E+   + +  E   +
Sbjct: 33  GCMVIRPNGYAVWEKMQAALDRMFKETGHVNAYFPLFIPESFIAKEAEHIEGFAPECAVV 92

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E ++   ++  I+SYR+LP    Q     R E+R R  + R+
Sbjct: 93  THGGGEELAEKLYVRPTSETIIWSSYKKWIQSYRDLPLLINQWANVVRWEMRTRLFL-RT 151

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   TPE S+    +M   Y               A    +G     E   
Sbjct: 152 TEFLWQEGHTAHATPEESQEEVMRMIRVYKTFAEEY-------MAMPVIMGRKTDSEKFA 204

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            AD                                                         
Sbjct: 205 GAD----------------------------------------------------ETYCI 212

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G     G  ++      F+  +G   YV   S+G+ + R++ A+I + 
Sbjct: 213 EAMMQDGKALQAGTSHNLGQNFAKAFDCQFQTKEGVLDYVWATSWGV-STRLIGALIMAH 271

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGS 390
            D +G++ P  +A  ++ +I I   D        E + A L + G   F DD  +   G 
Sbjct: 272 SDDRGLVLPPKLATRQVVIIPILRGDKAAVLAKAESMAAELKENGIPAFVDDSEQNSPGW 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +FA  +L G P+++ VG + +         R T  + ++ L+
Sbjct: 332 KFAEYELQGIPVRIEVGPRDIDKGVCIAARRDTLEKTELQLD 373


>gi|19074055|ref|NP_584661.1| PROLYL tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
 gi|74621295|sp|Q8SSD7|SYP_ENCCU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|19068697|emb|CAD25165.1| PROLYL tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
          Length = 520

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 141/432 (32%), Gaps = 73/432 (16%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGR 85
           +  MI  ++ KG Y   PLGQ     ++    ++    G  E   P L    +   E   
Sbjct: 45  KGEMIDYYAIKGCYVMRPLGQFVWKCIHKWFTKKIEELGVQECYFPMLVPKSMLEMEKDH 104

Query: 86  YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            +++  E+  +    ++ +       PT E ++   F   I+S+R+LP    Q     R 
Sbjct: 105 VENFSPEVAWITKCGNQVLEDPVAVRPTSETIIYPSFSKWIRSHRDLPLKLNQWCSVLRW 164

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           EL      +R +EFL ++ ++  LT + S      +   Y +I+                
Sbjct: 165 ELHGTLPFIRGKEFLWQEGHTAFLTRKESDEEVLAILDLYSQIY---------------- 208

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                                           SE      I    S  E++     A   
Sbjct: 209 --------------------------------SELLAVPVIKGRKSENEKFG---GADYT 233

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG- 320
              E              RG++       G  +S          +G +    +     G 
Sbjct: 234 TSIEAFIPGSG-------RGVQAATSHSLGQNFSRMFDIKADTDEGSESSSFVYQNSWGI 286

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA-------RLS 373
             R +        D  G++ P  VA  ++ ++         +D  E + A       +L 
Sbjct: 287 TTRSIGIAAMIHSDNLGLVLPPRVAMTQVVIVPCGITTASSKDDTESLRAYINGVCVQLK 346

Query: 374 KVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             G  V  DD      G +F   ++ G PL++ +G K ++ S+  +  R T  ++ +S+E
Sbjct: 347 NSGVRVHLDDRSNVTAGFKFNHWEIRGVPLRLEIGFKDMASSEACLVRRDTRAKKQVSVE 406

Query: 433 EVINYASHRFSN 444
            + +        
Sbjct: 407 GIAHTVMEEIDT 418


>gi|171687735|ref|XP_001908808.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943829|emb|CAP69481.1| unnamed protein product [Podospora anserina S mat+]
          Length = 514

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 84/469 (17%), Positives = 155/469 (33%), Gaps = 74/469 (15%)

Query: 17  DAEIAS-HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           D      H+  L T  I  +S G   +LP G +  + + + +R +  R G  E+  P + 
Sbjct: 79  DHRTLGLHQK-LFTTSI--YSPGSAFFLPSGTRIFNRLVSFLRNQYVRYGFEEVITPLIY 135

Query: 76  SADLWVESGRYDSYGKEMLR----------LADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             DLW +SG  ++Y ++M              +  D+     P +      IF S  +S+
Sbjct: 136 KKDLWAKSGHLENYAQDMYTVTGARHASPEETEETDREYGLKPMNCPGHCLIFSSQKRSF 195

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  +       R+E      G+ R R F   D + F   P   +    K        
Sbjct: 196 RDLPIRYADFSPLHRNENTGSLTGLTRVRRFHQDDGHIFCR-PVQIEEEIKKSLEFVKHT 254

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +  LGL    +   + P     S E                   +    +     D   +
Sbjct: 255 YATLGLGPYRLALSTRPEQYIGSLE-----------------DWENAENALKRALDKSGT 297

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA---- 300
             ++ E   A Y    D+    L DS  +  + +   ++    F    ++ L   A    
Sbjct: 298 DWTVNEGDGAFYGPKIDI---VLRDSHGKEHQTATIQLD----FQLPKRFELEYIAPAPE 350

Query: 301 -----------TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
                          + G    V +    +G++  + A++   +DGK  +W         
Sbjct: 351 LEQKGETTTDPELLASFGPVRPVMIHRAVLGSVERLMALLIEHYDGKYPLW-----LNPN 405

Query: 350 SLINIKAHD-QVCRDACEKIYARLSKV--------GCDVFWDDMGEQIGSQFAVADLLGF 400
            +  I  +D +   +   ++  RL  +           V  D     I  + A A   G 
Sbjct: 406 QIKIITLNDTEPVVEWATRVRERLLGIADGDVTPTHFAVDLDTSARPIAVKKAEAVSAGV 465

Query: 401 PLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLEEVINYASHRFSNN 445
            + V +G+  V    + +        +  R  M  EE+  +   R + +
Sbjct: 466 SVVVTIGASEVEGKSLSV-DMSAVTGSRKRVTMGPEELRAWVGERVAAH 513


>gi|157878081|pdb|1H4T|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
 gi|157878082|pdb|1H4T|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
 gi|157878083|pdb|1H4T|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
 gi|157878084|pdb|1H4T|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
           With L-Proline
          Length = 466

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 141/413 (34%), Gaps = 77/413 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           P G    +N+  ++      TG      P                +  E+  +     + 
Sbjct: 37  PYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFL--------FSPELAVVTHAGGEE 88

Query: 104 MIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           +       PT E V+  ++   I+S+R+LP    Q     R E+R R  + R+ EFL ++
Sbjct: 89  LEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFL-RTSEFLWQE 147

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            ++   T E ++    +M   Y R+                                   
Sbjct: 148 GHTAHATREEAEEEVRRMLSIYARLAR--------------------------------- 174

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                          E      I  L +  E++      T+            E      
Sbjct: 175 ---------------EYAAIPVIEGLKTEKEKFAGAVYTTT-----------IEALMKDG 208

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   Y G  ++      F+  D +  YV   S+G+ + R + A+I +  D +G++
Sbjct: 209 KALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGL-SWRFIGAIIMTHGDDRGLV 267

Query: 340 WPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVAD 396
            P  +AP ++ ++ I   +  +   +A + +   L   G  V  DD      G +F   +
Sbjct: 268 LPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWE 327

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           L G P +V +G K +   +  +  RL G +E + L  +      +       L
Sbjct: 328 LKGVPFRVELGPKDLEGGQAVLASRLGG-KETLPLAALPEALPGKLDAFHEEL 379


>gi|156049881|ref|XP_001590907.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|154693046|gb|EDN92784.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 576

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 141/443 (31%), Gaps = 78/443 (17%)

Query: 27  LRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVES 83
           L+  MI  ++   G +   P      + +    + +       E S P  L S  L  E 
Sbjct: 73  LKAEMIEYYNEISGFFILRPQSMFIWNQIRNWFQAQIETLDVEEASFPMFLSSKSLEKEK 132

Query: 84  GRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +    DK +       PT E VM   +   I+S+R+LP    Q     
Sbjct: 133 DHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLRLNQWNSVV 192

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +L           
Sbjct: 193 RWEAKQTTPFLRAREFLWQEGHTAHLTEELAGEEVLQILEFYAGVYEQL----------- 241

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                                     +    +  E++   Y  T
Sbjct: 242 -------------------------------------LAVPVVRGRKTEKEKFAGGYYTT 264

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  +   +P N     RGI+       G  +S     T +    K+       +  
Sbjct: 265 ------TVEGYIPSNG----RGIQGATSHCLGQNFSKMFDITVEDPTPKNGEKAGHLHVW 314

Query: 320 GA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEK------ 367
                   RV+  ++    D KG++ P  +A  +  +I +   +     +  ++      
Sbjct: 315 QNSWGLSTRVIGVMVMIHGDDKGLVLPPRIAKLQAIIIPVGITNKTTPEEKAKRYDELQS 374

Query: 368 IYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           I   L K G    +D         +F   +L G PL++  G +  +   V    R TG +
Sbjct: 375 IKDTLKKAGVRADYDIRDGYTPAWKFNDWELKGVPLRLEYGPRDAAQEVVSYARRDTGEK 434

Query: 427 EDMSLEEVINYASHRFSNNRPVL 449
             +S+  +           +  L
Sbjct: 435 GTISIANLSTEIPALLETIQSSL 457


>gi|224539709|ref|ZP_03680248.1| hypothetical protein BACCELL_04618 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518677|gb|EEF87782.1| hypothetical protein BACCELL_04618 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 520

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 66/427 (15%), Positives = 151/427 (35%), Gaps = 49/427 (11%)

Query: 24  KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  
Sbjct: 44  ELVVKADLAEQSAVRGCMVIKPYGYAIWEKIQRQLDDMFKETGHVNAYFPLLIPKSFLSR 103

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+   + + KE   +                          +       +   +  + + 
Sbjct: 104 EAEHVEGFAKECAVVTH-----------------------HRLKNAPDGSGVIVDPEAKL 140

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E               ++      +     ++Y     SY  +       +  MR E   
Sbjct: 141 E---------------EELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVMRWEMRT 185

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                + EF+     G T     ++  +  +   N    +       V       +A   
Sbjct: 186 RLFLRTAEFL--WQEGHTAHATREEAEEEAVRMLNVYA-EFAEKYMAVPVVKGVKSANER 242

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                L     E      + ++ G   + G  ++      F   + K  YV   S+G+ +
Sbjct: 243 FAG-ALDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV-S 300

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCD 378
            R++ A+I +  D  G++ P  +AP ++ ++ I  + ++ +   EK+    A+L  +G  
Sbjct: 301 TRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNAEMLQKINEKVAGIVAKLKSMGIS 360

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E +S + +  Y
Sbjct: 361 VKYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETLSCDGIEEY 420

Query: 438 ASHRFSN 444
             +    
Sbjct: 421 VKNLLEE 427


>gi|74006036|ref|XP_849468.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 2
            [Canis familiaris]
          Length = 1509

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 67/424 (15%), Positives = 124/424 (29%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
             G Y   P      +++      E  + G      P   S   L  E      +  E+  
Sbjct: 1041 SGCYILRPWAYSIWESIKDFFDAEIKKLGVENCYFPMFVSQGALEKEKTHVADFAPEVAW 1100

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1101 VTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLR 1160

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 1161 TREFLWQEGHSAFATFEEAAEEVLQILDLYAKVYE------------------------- 1195

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 1196 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISA---- 1228

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+     + G  +S      F+                G   R +  + 
Sbjct: 1229 -------SGRAIQGATSHHLGQNFSKMFEIIFEDPKTPGEKQFAYQNSWGLTTRTIGVMT 1281

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I     + +  +        C     RL  V   V  D
Sbjct: 1282 MVHGDNMGLVLPPRVASVQVVVIPCGITNALSEEDRDALIIKCNDYRRRLLSVNVRVKVD 1341

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +     V ++ R TG +  ++  E       
Sbjct: 1342 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVADNEAETKLKA 1400

Query: 441  RFSN 444
               +
Sbjct: 1401 ILED 1404


>gi|161528166|ref|YP_001581992.1| prolyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
 gi|160339467|gb|ABX12554.1| prolyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
          Length = 480

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 68/419 (16%), Positives = 139/419 (33%), Gaps = 71/419 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G+    P G    +++     ++  + G     +P L    L   E   +  +  E+  +
Sbjct: 37  GLIVLRPDGHSIWESLKNTFDKKFAKNGIRNGFLPVLIPESLLGKEQKHFAGFNPEVFWV 96

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                  +       PT E +   ++   I+S+R+LP          R E++     +R+
Sbjct: 97  THSGTNEIGDRLALRPTSETLAYTLYSKWIQSWRDLPLKINFWNTALRAEIKATKPFLRT 156

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL                                                   H   +
Sbjct: 157 SEFL-----------------------------------------------WQEGHTVHI 169

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             +  E +V    D     +  E          +   +   A Y  T +         +P
Sbjct: 170 TQEEAEQEVMKILDIYKNTVEEELAIPVTTGKKSEKEKFVGAVYTTTMESI-------MP 222

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           + K      +++G   + G  +S P    F   D  +H+    S+G+ + R++ A+I + 
Sbjct: 223 DGK-----ALQMGTSHFLGQNFSKPFEVKFADKDNVEHFAWQTSWGV-SWRLIGAMIMAH 276

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
            D +G++ P  VAP ++ ++ I  +D+         ++I   L      V  DD  G   
Sbjct: 277 GDDQGLVLPPKVAPTQVVIVPIYRNDEGRDKVLPKVKEIQESLEAKDIRVQVDDRQGLSP 336

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN--YASHRFSNN 445
           G +F   ++ G P+++ +G K +    + +  R    + ++   E+            N
Sbjct: 337 GYKFNDWEMKGVPIRIEIGPKDIEKQSIVVAKRYNREKTNLQFSEIEKVVEVLDEIQKN 395


>gi|74006044|ref|XP_858992.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 5
            [Canis familiaris]
          Length = 1508

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 67/424 (15%), Positives = 124/424 (29%), Gaps = 76/424 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
             G Y   P      +++      E  + G      P   S   L  E      +  E+  
Sbjct: 1040 SGCYILRPWAYSIWESIKDFFDAEIKKLGVENCYFPMFVSQGALEKEKTHVADFAPEVAW 1099

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1100 VTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLR 1159

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 1160 TREFLWQEGHSAFATFEEAAEEVLQILDLYAKVYE------------------------- 1194

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                   E      +    +  E++    Y  T +         
Sbjct: 1195 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISA---- 1227

Query: 271  LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                   S R I+     + G  +S      F+                G   R +  + 
Sbjct: 1228 -------SGRAIQGATSHHLGQNFSKMFEIIFEDPKTPGEKQFAYQNSWGLTTRTIGVMT 1280

Query: 330  ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWD 382
                D  G++ P  VA  ++ +I     + +  +        C     RL  V   V  D
Sbjct: 1281 MVHGDNMGLVLPPRVASVQVVVIPCGITNALSEEDRDALIIKCNDYRRRLLSVNVRVKVD 1340

Query: 383  DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                   G +F   +L G P+++ VG + +     V ++ R TG +  ++  E       
Sbjct: 1341 LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVADNEAETKLKA 1399

Query: 441  RFSN 444
               +
Sbjct: 1400 ILED 1403


>gi|308463013|ref|XP_003093785.1| CRE-PARS-1 protein [Caenorhabditis remanei]
 gi|308249391|gb|EFO93343.1| CRE-PARS-1 protein [Caenorhabditis remanei]
          Length = 570

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 68/428 (15%), Positives = 133/428 (31%), Gaps = 69/428 (16%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ-SADLWVESGR 85
           +  MI  +   G Y   P      +++         + G      P    +A L  E   
Sbjct: 98  KAEMIEYYDVSGCYVLRPWSFAVWESIQEWFDSRIKKLGVKNCYFPMFVSNAALEREKTH 157

Query: 86  YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
              +  E+  +    +  M       PT E VM   ++  ++S+R+LP    Q     R 
Sbjct: 158 IADFAPEVAWVTRAGNSEMAEPVAIRPTSETVMYPSYKKWVQSHRDLPIKLNQWCNVVRW 217

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +R+REFL ++                             G  +    A+   
Sbjct: 218 EFKHPTPFLRTREFLWQE-----------------------------GHTAYANAAD--- 245

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                           E +VF   D                   +   +     +  T +
Sbjct: 246 ---------------AEKEVFQILDLYAGVYNDLLAIPVVKGRKSEKEKFAGGDFTTTVE 290

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG- 320
            +              + RGI+     + G  +S     +++    +           G 
Sbjct: 291 AYVA-----------CNGRGIQGATSHHLGQNFSKMFEISYEDPSREGERAYAWQNSWGL 339

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSKVGC 377
           + R + A+I    D KG++ P  VA  ++ ++ +           DA +K+   L   G 
Sbjct: 340 STRSIGAMIMVHGDDKGLVLPPRVAAVQVIVVPVGFKTSNKDSLFDAVDKVTKDLVAGGV 399

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               D       G +F   +L G P++  VG   ++  +V    R  G ++ +S++ ++ 
Sbjct: 400 KAEHDLRENYNAGWKFNHWELKGVPIRFEVGPNDLAKKQVTAVIRHNGEKQQVSMDGIVA 459

Query: 437 YASHRFSN 444
                  +
Sbjct: 460 SVKTLLDD 467


>gi|310796673|gb|EFQ32134.1| prolyl-tRNA synthetase [Glomerella graminicola M1.001]
          Length = 565

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 81/434 (18%), Positives = 142/434 (32%), Gaps = 74/434 (17%)

Query: 27  LRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVES 83
           L+  M+  ++   G +   P        +     E     G  E S P  L S  L  E 
Sbjct: 76  LKAEMVEYYNEISGFFILRPASMYIWTVIRKWFSERIEDMGVDETSFPMFLSSKSLEKEK 135

Query: 84  GRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +    DK +       PT E VM   +   I+S+R+LPF   Q     
Sbjct: 136 DHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPFRLNQWNSVV 195

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +L           
Sbjct: 196 RWEAKQTTPFLRTREFLWQEGHTAHLTEELAGKEVLEILELYAGVYEQL----------- 244

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                                     +    +  E++   Y  T
Sbjct: 245 -------------------------------------LAVPVVRGTKTENEKFAGGYYTT 267

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  +   +P N     RGI+       G  +S     T +  D K   + +     
Sbjct: 268 ------TVEGYIPSNG----RGIQGATSHCLGQNFSKMFDITVEDPDKKGEKIHVWQNSW 317

Query: 320 G-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYAR 371
           G + RV+  ++    D KG++ P  +A  ++ LI +           +   D  + +   
Sbjct: 318 GLSTRVIGVMVMIHGDDKGLVLPPRIAKVQVVLIAVGITAKTTPEDRKKLEDKVDDLRNE 377

Query: 372 LSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L K G     D         +F   +L G PL++  G K  +   V    R TG +  ++
Sbjct: 378 LRKAGVRAESDLRDGYTPAWKFNEWELRGVPLRLEFGPKDAAKEVVAFARRDTGEKGSVA 437

Query: 431 LEEVINYASHRFSN 444
           L E+          
Sbjct: 438 LAELSTKVPELLET 451


>gi|124805808|ref|XP_001350543.1| bifunctional aminoacyl-tRNA synthetase, putative [Plasmodium
           falciparum 3D7]
 gi|74862875|sp|Q8I5R7|SYP_PLAF7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|23496667|gb|AAN36223.1| bifunctional aminoacyl-tRNA synthetase, putative [Plasmodium
           falciparum 3D7]
          Length = 746

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 72/409 (17%), Positives = 139/409 (33%), Gaps = 70/409 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
            G Y   P      + V A   +E  +        P   +   L  E    + +  E+  
Sbjct: 282 SGCYILRPAAYYIWECVQAFFNKEIKKLNVENSYFPLFVTKNKLEKEKNHIEGFSPEVAW 341

Query: 96  LADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D    + +   PT E +M  +F   I+SYR+LP    Q     R E +     +R
Sbjct: 342 VTKYGDSNLPEEIAIRPTSETIMYSVFPKWIRSYRDLPLKLNQWNTVVRWEFKQPTPFIR 401

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++     E +      +                        +      E++
Sbjct: 402 TREFLWQEGHTAHKNEEEAVKLVFDILD----------------------LYRRWYEEYL 439

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVHNEKLFDS 270
                                         I  + S  E++    + +T++    +    
Sbjct: 440 A--------------------------VPIIKGIKSEGEKFGGANFTSTAEAFISENG-- 471

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                    R I+     Y GT ++      F+  +    YV   S+G    R +  +I 
Sbjct: 472 ---------RAIQAATSHYLGTNFAKMFKIEFEDENEVKQYVHQTSWGC-TTRSIGIMIM 521

Query: 331 SSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDM-GE 386
           +  D KG++ P +V+ +K+ ++ I      +      C+ I   L     +  +DD    
Sbjct: 522 THGDDKGLVLPPNVSKYKVVIVPIFYKTTDENAIHSYCKDIEKILKNAQINCVYDDRASY 581

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             G +F   +L G P+++ VG K + ++   I  R    + ++  E V+
Sbjct: 582 SPGYKFNHWELRGIPIRIEVGPKDLQNNSCVIVRRDNNEKCNVKKESVL 630


>gi|332880161|ref|ZP_08447843.1| proline--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681920|gb|EGJ54835.1| proline--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 493

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 67/412 (16%), Positives = 137/412 (33%), Gaps = 48/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +  ++ ++   TG      P L     L  E+   + + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQRVLDDKFKETGVQNAYFPLLIPKSFLSKEAEHVEGFAKECAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +   N   T   +    + E              
Sbjct: 96  TH-----------------------YRLKTNEDKTGVVVDPAAKLE-------------- 118

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            ++      +     ++Y     SY  +          MR E        + EF+     
Sbjct: 119 -EELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWCNVMRWEMRTRLFLRTAEFL--WQE 175

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++  +           D       V       + T       L     E   
Sbjct: 176 GHTAHATREEAEERAKLMLKVYA-DFAEQYMAVPVVQGVKSETERFAG-ALDTYTIEAMM 233

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  +    +  F   D K  Y    S+G+ + R++ A+I +  D  
Sbjct: 234 QDGKALQSGTSHFLGQNFGKAFNVQFINKDNKLEYAWATSWGV-STRLMGALIMTHSDDN 292

Query: 337 GIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ ++ I  + +      +  E I ARL  +G  V +D+   ++ G +F
Sbjct: 293 GLVLPPKLAPIQVVIVPIYKNAEQLKAIDEKVEGIVARLRALGISVKYDNADNKRPGFKF 352

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  +L G P+++++G + + ++ VE+  R T  +E  + + + +Y       
Sbjct: 353 ADYELKGVPVRLVMGGRDLENNTVEVMRRDTLEKETRTCDGIEDYVKTLLDE 404


>gi|330930995|ref|XP_003303228.1| hypothetical protein PTT_15359 [Pyrenophora teres f. teres 0-1]
 gi|330938329|ref|XP_003305730.1| hypothetical protein PTT_18645 [Pyrenophora teres f. teres 0-1]
 gi|311317156|gb|EFQ86197.1| hypothetical protein PTT_18645 [Pyrenophora teres f. teres 0-1]
 gi|311320895|gb|EFQ88675.1| hypothetical protein PTT_15359 [Pyrenophora teres f. teres 0-1]
          Length = 529

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 1/224 (0%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
            +  SH L++R G + Q   G++  LPLG +  + +  +I +  N  GA ++S+ ++ + 
Sbjct: 19  HQDESHSLLVRGGFLRQAHSGVFHLLPLGLRVQNKLEGLIDKHMNSIGASKVSLSSITTE 78

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            LW +SGRY S   E+LR+ DR +   +  PTHEE +T +  S + SY++LP   YQI  
Sbjct: 79  ALWQQSGRY-SANSELLRIKDRRESGFLLSPTHEEEITALVASMVHSYKDLPLRLYQIGR 137

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           K+RDE RPR G++R++EF+MKD Y+FD +P+ +  +Y  +  +Y  +F+ L L  +   A
Sbjct: 138 KYRDERRPRGGLLRAKEFVMKDLYTFDSSPKAALETYESVRQAYNNLFNELKLPYLVADA 197

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +SG +GG LSHE+   +  GE  VF  +               D
Sbjct: 198 DSGNMGGKLSHEYHFASPKGEDYVFSCQSCDYVANEELVEKKTD 241



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 96/201 (47%), Gaps = 13/201 (6%)

Query: 252 WTAPYAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATF-KGADG 307
             AP   + D+   K  D  P     K    + IEVGH F+ GT+YS+P++A        
Sbjct: 331 LNAPSTCSVDITLTKPGDPCPRCSTGKLNIQKAIEVGHTFHLGTRYSVPLNAVIALPDQN 390

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                 MG +GIG  R++ AV     D +G+ WP  +AP++  +++    ++       +
Sbjct: 391 LSSPTHMGCHGIGVSRIIGAVASLLSDARGLNWPRVIAPYEAIVLSDPKTEEKDTT---E 447

Query: 368 IYARL----SKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +Y  L         D+  DD  G+ +G +   ADL+G+P+ V++G +   D +VEI+ R 
Sbjct: 448 VYDALHGEGRNSDIDLVLDDRAGKSLGWKLKDADLIGYPVVVVMG-RSWKDKRVEIQCRR 506

Query: 423 TGIREDMSLEEVINYASHRFS 443
            G+++D+ L E+         
Sbjct: 507 LGVKKDVELNELRTEVVALLE 527


>gi|253568239|ref|ZP_04845650.1| prolyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|251842312|gb|EES70392.1| prolyl-tRNA synthetase [Bacteroides sp. 1_1_6]
          Length = 497

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 147/426 (34%), Gaps = 49/426 (11%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +   + + KE   +                          +       +   +    + E
Sbjct: 82  AEHVEGFAKECAVVTH-----------------------YRLKNAEDGSGVVVDPAAKLE 118

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                          ++      +     ++Y     SY  +       +   R E    
Sbjct: 119 ---------------EELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+     G T     K+  +  I   N  + +       V       +A    
Sbjct: 164 LFLRTAEFL--WQEGHTAHATRKEAEEEAIRMLNV-YGEFAEKYMAVPVVKGVKSANERF 220

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L     E      + ++ G   + G  ++      F   + K  YV   S+G+ + 
Sbjct: 221 AG-ALDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +      E I A+L  +G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISV 338

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E ++ + +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCDGIETYV 398

Query: 439 SHRFSN 444
                 
Sbjct: 399 QKLLEE 404


>gi|320162939|gb|EFW39838.1| prolyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 788

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 100/288 (34%), Positives = 149/288 (51%), Gaps = 6/288 (2%)

Query: 4   SKYFLPILQENP--RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           S  F P+    P   DA+  SH+ +   G++ QH+ GIY+  P+G +AL+NV  II EE 
Sbjct: 126 STLFAPLF--APLGADAKTLSHRYLTYAGLMVQHAAGIYALTPVGLRALENVTRIICEEL 183

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
              GA   ++P L + +LW ++GR+ S G+E+ RL DR  + M+ GPTHEE + ++  + 
Sbjct: 184 ELVGAQRTALPMLMTKELWDKTGRWTSSGQEVFRLQDRKGRDMLLGPTHEEAVCELAATK 243

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                  P   YQ+  KFRDE RPR G+MR REF MKD Y+FD+  E +  +Y+ +   Y
Sbjct: 244 PLGRGQFPLMLYQLDRKFRDEARPRHGLMRGREFWMKDLYTFDVDIEHAAKTYDTICGVY 303

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            RIF RLGL  +   A++G IGG  SHEF V++  GE  +       +  +  E      
Sbjct: 304 GRIFDRLGLDYVRAEADTGNIGGVRSHEFHVISPAGEDTLLVCSSC-NHAMNEEKAVAQ- 361

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
           +  L S +    A   A  DV  +       +  +     + VG +  
Sbjct: 362 VAPLPSNLAVRPALSGAEVDVAEQHALMHADKLAQALGVQVAVGQVDQ 409


>gi|156742029|ref|YP_001432158.1| prolyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
 gi|259511618|sp|A7NKX0|SYP_ROSCS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|156233357|gb|ABU58140.1| prolyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
          Length = 480

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 70/428 (16%), Positives = 139/428 (32%), Gaps = 73/428 (17%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKE 92
           +  KG   + P G    + +   + +    TG +    P L     L  E+   + +  E
Sbjct: 31  EVVKGCIVFKPTGYALWEAIQRGLDDRIKATGHVNAYFPLLIPKSFLMKEAEHVEGFAPE 90

Query: 93  MLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  +     +      +  PT E ++   +   ++SYR+LP    Q     R E+R R  
Sbjct: 91  VAEVTRAGGEDLAEPYVIRPTSETIIGYFYSKWVRSYRDLPLLINQWANVMRWEMRTRPF 150

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R+ EFL ++                                                H
Sbjct: 151 L-RTTEFLWQEG-----------------------------------------------H 162

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                 +  E +       +      ++     I  L S  E++              L 
Sbjct: 163 TVHATEEDAERETLLILHEVYADFVEKDMAIPVIRGLKSEKEKFPG-----------ALR 211

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               E      R ++ G     G  ++     T+        Y    S+G+ + R++ A+
Sbjct: 212 SYCIEAMMQDGRALQAGTSHNLGQNFARAFDITYTDQHNTIQYAWTTSWGV-STRLIGAL 270

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMG 385
           I +  D +G++ P  +AP ++ ++ I  +D       +A +++ A    +      DD  
Sbjct: 271 IMTHSDDEGLVIPPRLAPTQVVVVPIYRNDAERSVVMEAVQRMTAEWKGL-LRFKVDDRD 329

Query: 386 E-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMSLEEVINYASHR 441
               G +F   +L G P++V +G K +    V I  R       +  +  E +    +  
Sbjct: 330 NLTPGFKFNEWELKGVPIRVEIGPKDIEKGSVAIARRDQPGREGKSFVPQEGLTARLAAL 389

Query: 442 FSNNRPVL 449
               +  L
Sbjct: 390 LEEIQQAL 397


>gi|11499201|ref|NP_070438.1| prolyl-tRNA synthetase [Archaeoglobus fulgidus DSM 4304]
 gi|2648947|gb|AAB89637.1| prolyl-tRNA synthetase (proS) [Archaeoglobus fulgidus DSM 4304]
          Length = 575

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 83/429 (19%), Positives = 156/429 (36%), Gaps = 80/429 (18%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG+Y W P G K    V + +RE  +R    E+  P L    +L  E      + 
Sbjct: 129 VRYPVKGLYVWFPFGFKIRQLVYSKLREIMDRE-HDEVYFPALIPETELGKEGEHIKGFE 187

Query: 91  KEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            E+  +        D  +   PT E  M  +FR  ++++ +LP   YQI   FR E +  
Sbjct: 188 DEVYWITHGGLTPLDVKLALRPTSETAMYPMFRLWVRNHADLPLKVYQIVNTFRYETKHT 247

Query: 147 FGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             ++R RE    K+A++     E +     K    Y                        
Sbjct: 248 RPLIRLREITSFKEAHTVHKDFEEAAEHVKKAIGFY-----------------------K 284

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             ++F+                              I  +     +W     A   +  +
Sbjct: 285 EFYDFLA-----------------------------IPYMVIRRPEWDKFPGAAYTIAFD 315

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            +    P+      R +++G + +    ++      ++  +G+ +Y     YGI + R +
Sbjct: 316 TIM---PDG-----RTLQIGTVHHLADNFARTFDIKYEAPNGEHYYAHQTCYGI-SERCI 366

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           AA+I    D  G++ P  VAP +I +I I  K  ++   +AC K+  +L      V  D+
Sbjct: 367 AALISVHGDDLGLVLPFEVAPVQIVIIPILYKGKEEAVMEACRKLAEKLKA--FRVVLDE 424

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN------- 436
             ++ G+++   +L G P++  +G +        +  R    + ++ L+EV         
Sbjct: 425 GEDRPGAKYYKWELKGVPIRFEIGPRDAEKGVAVVSFRDEKRKFEVPLDEVDEGKVLEWA 484

Query: 437 -YASHRFSN 444
                R  N
Sbjct: 485 RELKQRLRN 493


>gi|254495081|ref|ZP_05108005.1| prolyl-tRNA synthetase [Polaribacter sp. MED152]
 gi|85819431|gb|EAQ40588.1| prolyl-tRNA synthetase [Polaribacter sp. MED152]
          Length = 492

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 160/436 (36%), Gaps = 85/436 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG      P      L+  E    + + KE   +
Sbjct: 33  GCMVIKPYGFAIWEKMQAELDRMFKETGHENAYFPLFVPKSLFEAEEKNAEGFAKECAVV 92

Query: 97  AD-------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                                + ++ ++  PT E ++ + ++  I+SYR+LP    Q   
Sbjct: 93  THYRLQNDPDNEGKLRVDPEAKLEEELVVRPTSEAIIWNTYKGWIQSYRDLPLLINQWAN 152

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E+R R  + R+ EFL ++                             G  +   +A
Sbjct: 153 VVRWEMRTRLFL-RTAEFLWQE-----------------------------GHTAHATKA 182

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           E              +A+  + Q   ++   +F           I  + S  E++     
Sbjct: 183 E-------------AVAEAKQMQDVYAEFAENFMA------MPVIKGVKSDSERFAG--- 220

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E      + ++ G   + G  ++      +   +GK  YV   S+
Sbjct: 221 --------AEDTYTIEALMQDGKALQAGTSHFLGQNFAKAFDVKYTSKEGKQEYVWATSW 272

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA---RLSK 374
           G+ + R++  +I +  D  G++ P  +AP ++ ++ I  +D+      +K+ A    L K
Sbjct: 273 GV-STRLIGGLIMTHSDDNGLVLPPKLAPIQVVIVPIYKNDEQLEAISDKVNAISIELGK 331

Query: 375 VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V +D+    + G++FA  +L G P+++ +G++ + +  +E+  R T  +  + + +
Sbjct: 332 KGISVKYDNRDTFRPGAKFAEYELKGVPVRIALGARDLENGTLEVARRDTLEKNTIDIND 391

Query: 434 VINYASHRFSNNRPVL 449
            ++Y      + +  L
Sbjct: 392 AVSYIDGLLKDIQNNL 407


>gi|332521716|ref|ZP_08398167.1| prolyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
 gi|332042546|gb|EGI78747.1| prolyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
          Length = 492

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 152/436 (34%), Gaps = 85/436 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG      P      L+  E    + + KE   +
Sbjct: 33  GCMVIKPYGYAIWEKMQAELDRMFKETGHQNAYFPLFVPKSLFEAEEKNAEGFAKECAVV 92

Query: 97  AD-------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                                + ++ ++  PT E ++ + ++  I+SYR+LP    Q   
Sbjct: 93  THYRLQNDPDNEGKLRVDPEAKLEEELVVRPTSEAIIWNTYKGWIQSYRDLPLLINQWAN 152

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E+R R  + R+ EFL ++ ++   T   +      M   Y                
Sbjct: 153 VVRWEMRTRLFL-RTAEFLWQEGHTAHETRVEALAEAETMNNVYATFA------------ 199

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                      EF+                              +  L S  E++     
Sbjct: 200 ----------EEFMA--------------------------IPVVQGLKSESERFAG--- 220

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E      + ++ G   + G  ++      F   +GK  YV   S+
Sbjct: 221 --------AEETYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFTNKEGKQDYVWATSW 272

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSK 374
           G+ + R++ A+I +  D +G++ P ++AP ++ ++ I   D+      D    I   L  
Sbjct: 273 GV-STRLMGALIMTHSDDQGLVLPPNLAPNQVVIVPIYKTDEQLEQITDVVNGIMKDLRA 331

Query: 375 VGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
               V +D+    + G++FA  +L G PL++ +G++ + +  VE+  R    +E + LE 
Sbjct: 332 KHITVKFDNRTTHRPGAKFAQHELQGVPLRIAIGARDLENGTVELARRDILTKETVYLES 391

Query: 434 VINYASHRFSNNRPVL 449
           +++         +  L
Sbjct: 392 LVDKVEGLMVEIQDSL 407


>gi|110597728|ref|ZP_01386012.1| prolyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
 gi|110340635|gb|EAT59115.1| prolyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
          Length = 481

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 73/420 (17%), Positives = 148/420 (35%), Gaps = 69/420 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG +    P       +  E+   + +  E   +
Sbjct: 33  GCMVIRPNGYAIWEKMQAALDRMFKETGHVNAYFPLFIPESFIAKEAEHIEGFAPECAVV 92

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E ++   ++  I+SYR+LP    Q     R E+R R  + R+
Sbjct: 93  THGGGEELAEKLYVRPTSETIIWSSYKKWIQSYRDLPILINQWANVVRWEMRTRLFL-RT 151

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   TPE S+    +M   Y                           E++ 
Sbjct: 152 TEFLWQEGHTAHATPEESQEEVMRMINVYKTFA----------------------EEYMA 189

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +                            I+   +  E++              +     
Sbjct: 190 M--------------------------PVIMGKKTDSEKFAG-----------AVETYCI 212

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G     G  ++      F+  +    YV   S+G+ + R++ A+I + 
Sbjct: 213 EAMMQDTKALQAGTSHNLGQNFAKAFDCQFQTKESTLDYVWATSWGV-STRLIGALIMAH 271

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGS 390
            D +G++ P  +A  ++ +I I   D        E I   L K G   F D   +   G 
Sbjct: 272 SDDRGLVLPPKLATRQVVIIPILRGDKAAVLAKAEAIADSLKKSGIPSFVDGSEQNSPGW 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-VINYASHRFSNNRPVL 449
           +FA  +L G P+++ +G + + ++      R T  + +++L++ +    S   +  +  L
Sbjct: 332 KFAEYELQGIPIRIELGPRDIENNICIAARRDTLEKTELALDDTLPLKISEILNGIQQNL 391


>gi|19112954|ref|NP_596162.1| cytoplasmic proline-tRNA ligase Prs1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|74582353|sp|O60155|YHY6_SCHPO RecName: Full=Putative prolyl-tRNA synthetase C19C7.06; AltName:
           Full=Proline--tRNA ligase; Short=ProRS
 gi|3218410|emb|CAA19574.1| cytoplasmic proline-tRNA ligase Prs1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 716

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 69/451 (15%), Positives = 145/451 (32%), Gaps = 80/451 (17%)

Query: 16  RDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           +DA+  +   +++ ++ MI  +   G Y   P      + +     +E  + G      P
Sbjct: 211 KDADFPNWYQQVLTKSDMIEYYDISGCYILKPWSYSIWEAIQGWFDKEIKKLGVRNGYFP 270

Query: 73  TLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
              S+  L  E    + +  E+  +        D+ +   PT E VM   +   I+S+R+
Sbjct: 271 LFVSSKVLEKEKDHVEGFAPEVAWVTRAGTSELDEPIAIRPTSETVMYPYYAKWIRSHRD 330

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP    Q     R E +     +R+REFL ++ +    T   +     +     L ++ R
Sbjct: 331 LPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEGH----TAHMTLEGATEEVHQILDLYAR 386

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           +                                              +      I  + S
Sbjct: 387 IYT--------------------------------------------DLLAVPVIKGVKS 402

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD- 306
             E++         +    +   +P     + RGI+       G  +S   +   +  + 
Sbjct: 403 ENEKFAGG------MFTTTVEGYIP----TTGRGIQGATSHCLGQNFSKMFNIVVEDPNA 452

Query: 307 -----GKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ- 359
                G+   + +     G + R +   +    D KG+  P ++A  +  ++     ++ 
Sbjct: 453 EIGPTGERPKLFVWQNSWGLSTRTIGVAVMVHGDDKGLKLPPAIALVQSVVVPCGITNKT 512

Query: 360 ------VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
                      C K+  RL+        D      G +F+  ++ G PL++  G      
Sbjct: 513 TDQERNEIEGFCSKLADRLNAADIRTEADLRAYTPGYKFSHWEMKGVPLRLEYGPNDAKK 572

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++V    R T  +  + L  +    S   + 
Sbjct: 573 NQVTAVRRDTFEKIPVPLNNLEKGVSDLLAK 603


>gi|195392357|ref|XP_002054824.1| GJ22578 [Drosophila virilis]
 gi|194152910|gb|EDW68344.1| GJ22578 [Drosophila virilis]
          Length = 603

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 130/422 (30%), Gaps = 73/422 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
            G Y            +      E  R G  E   P   S A L  E      +  E+  
Sbjct: 134 SGCYILRHWSFAIWKCIRNWFDAEITRMGVKECYFPIFVSKAALEREKTHIADFAPEVAW 193

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D  +       PT E VM   +   I+SYR+LP    Q     R E +     +R
Sbjct: 194 VTKSGDSDLAEPIAVRPTSETVMYPAYAKWIQSYRDLPIRLNQWNNVVRWEFKHPQPFLR 253

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++                             G  +   +AE             
Sbjct: 254 TREFLWQE-----------------------------GHTAFASKAE------------- 271

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
              +  E     ++ + D            +    +  E++    Y  T +         
Sbjct: 272 ADKEVLEILDLYAQVYTDLLA------IPVVKGRKTEKEKFAGGDYTTTVEAFISA---- 321

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                  S R I+     + G  +S      ++  + +       +      R +  +I 
Sbjct: 322 -------SGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKQYVYQNSWGITTRTIGVMIM 374

Query: 331 SSHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYARLSKVGCDVFWDD 383
              D +G++ P  VA  +  ++     +   D+       AC+K+  RL+  G     D 
Sbjct: 375 VHADNQGLVLPPHVACVQAIVVPCGITVNTKDEERAQLLAACDKLEKRLNGAGVRCEGDY 434

Query: 384 MGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
                 G +F   +L G P+++ +G K +   ++    R TG +  ++L +V        
Sbjct: 435 RDNYSPGWKFNHWELKGVPIRIELGPKDMQAKQIVAVRRDTGEKLTIALADVEKKIPALL 494

Query: 443 SN 444
             
Sbjct: 495 ET 496


>gi|302384826|ref|YP_003820648.1| prolyl-tRNA synthetase [Clostridium saccharolyticum WM1]
 gi|302195454|gb|ADL03025.1| prolyl-tRNA synthetase [Clostridium saccharolyticum WM1]
          Length = 477

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 67/412 (16%), Positives = 146/412 (35%), Gaps = 68/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  +  P G    +N+ + +       G   + +P      L   E    + +  E+  +
Sbjct: 39  GCMAIKPAGYAIWENIQSELDRRFKEVGVENVYMPMFIPESLLQKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                +   + +   PT E +  D +   I+SYR+LP  + Q     R E   R   +RS
Sbjct: 99  THGGLEPLQERLCVRPTSETLFCDFYSREIQSYRDLPKLYNQWCSVVRWEKTTRP-FLRS 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++ ++   T E ++    +M   Y                               
Sbjct: 158 REFLWQEGHTAHATAEEAEARTEQMLHLYADFCE-------------------------- 191

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                 E      +    +  E++    A  +            
Sbjct: 192 ----------------------EVLAMPVVRGQKTDKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG+ ++      +   + K  YV   S+G+   R++ A+I   
Sbjct: 219 EALMHDGKALQSGTSHNFGSGFAKAFEIQYSDKENKLQYVHQTSWGM-TTRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP ++ ++ ++   +   +   ++   LS     V  DD  +  G +F
Sbjct: 278 GDDNGLVLPPRIAPTQVIVVPVQQQKEGVLEKAFELKQVLS--NYKVKVDDSDKSPGWKF 335

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + +++ G P++V +G + + +++  +  R T  +  +S++++          
Sbjct: 336 SESEMRGIPVRVEIGPRDILENQAVLVRRDTHEKITVSIDQLNAKVGELLDT 387


>gi|329569947|gb|EGG51702.1| proline--tRNA ligase [Enterococcus faecalis TX1467]
          Length = 516

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 107/187 (57%), Gaps = 3/187 (1%)

Query: 260 SDVHNEKLFDSLPENKRV--SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +  D  P+   V    +GIE+GHIF  GT+YS  M AT    +G++  V MG Y
Sbjct: 326 EDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCY 385

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E + D +GI WP  +APF + ++ +   D+      +++ A +++ G 
Sbjct: 386 GIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGY 445

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           +V  DD  E+ G +FA ADL+G P+++ VG K V D  VE+K + TG   ++  EE+ + 
Sbjct: 446 EVLVDDRNERAGVKFADADLIGCPIRITVGKKAV-DGVVEVKIKRTGEMLEVRKEELEST 504

Query: 438 ASHRFSN 444
            S   + 
Sbjct: 505 LSILMNT 511



 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 80/179 (44%), Positives = 107/179 (59%), Gaps = 1/179 (0%)

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           +REE  +  A+EM +P L  A+LW ESGRY++YG  + RL DRND+  I GPTHEE  T+
Sbjct: 1   MREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTE 60

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           + R  I SY+ LP   YQIQ K+RDE RPR G++R REF+MKD YSF         SY  
Sbjct: 61  LIRDEINSYKRLPLNLYQIQTKYRDEKRPRSGLLRGREFIMKDGYSFHADEASLDQSYRD 120

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
              +Y RIF R GL+   +  + G +GG  S EF+ +++ GE  + C     D+    E
Sbjct: 121 YEKAYSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTI-CYSTESDYAANLE 178


>gi|242768112|ref|XP_002341505.1| prolyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
 gi|218724701|gb|EED24118.1| prolyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
          Length = 641

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 89/291 (30%), Positives = 145/291 (49%), Gaps = 10/291 (3%)

Query: 2   RRSKYFLPI--LQENPRDAEIASH-KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           R S +++P   ++    +        L++R G I Q   GI+  LPLG +  + + A+I 
Sbjct: 42  RVSNFWIPTGGIERKAAETVKEDANDLLIRAGFIRQAYSGIFHMLPLGLRVQNKLEALID 101

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                 GA ++S+ +L S +LW ++GR    G E+ +  DR +   +  PTHEE +T + 
Sbjct: 102 RHMESLGASKVSLSSLSSQELWEKTGRL-KSGSEVFKFNDRKESRFLLAPTHEEEITSLV 160

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            S + SY+ LP   YQI  K+RDE RPR G++R REF+MKD Y+FD   E +  +Y    
Sbjct: 161 ASLVNSYKELPLRLYQITRKYRDEARPRQGLLRGREFVMKDLYTFDYNAEQALATYEATR 220

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +Y RIF  L +  +   A+SG +GG+LSHEF  ++D GE  +       D+    E +D
Sbjct: 221 EAYKRIFDTLKVPYLVAAADSGNMGGNLSHEFHFISDKGEDTLISCSHC-DYVYNEEVSD 279

Query: 239 FDDIIS-----LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
              + +     L   V   +          +  L+ ++ ++K+   R    
Sbjct: 280 GRALGTVIEKPLTPPVPSESGVGTDNPLAISVALWTAISKDKKTLVRAWYP 330



 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 95/193 (49%), Gaps = 21/193 (10%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK--------------GADGKDHYVQ 313
                E        +E+GH FY GT+YS  + A                     ++  ++
Sbjct: 451 CHKCSEGSLHMHNAVELGHTFYLGTRYSEVLKAKVFVDNSVIKSNESSTNSNKSQNVPME 510

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG +GIG  R+++AV ++  D +G+ WP ++APF+I ++  +  +       E IY  L 
Sbjct: 511 MGCHGIGVSRMISAVADARSDIRGLNWPRAIAPFEIIVVPARNLEPE----AENIYDLLR 566

Query: 374 KVG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDMS 430
           +     D+  DD  +Q+G +   ADL+G+P+ +++G  + S+ KVE+  R   G+RED+ 
Sbjct: 567 QHTDTSDIILDDRTKQVGWKLKDADLIGYPIVIVLGKAWKSEHKVEVHCRQLDGLREDVP 626

Query: 431 LEEVINYASHRFS 443
           L  ++ Y     +
Sbjct: 627 LGNLVEYVRSLLA 639


>gi|224025842|ref|ZP_03644208.1| hypothetical protein BACCOPRO_02584 [Bacteroides coprophilus DSM
           18228]
 gi|224019078|gb|EEF77076.1| hypothetical protein BACCOPRO_02584 [Bacteroides coprophilus DSM
           18228]
          Length = 521

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 141/412 (34%), Gaps = 48/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +  I+ +    TG +    P L     L  E+   + + KE   +
Sbjct: 61  GCMVIKPYGYAIWEKMQRILDDMFKATGHVNAYFPLLIPKSYLSREAEHVEGFAKECAVV 120

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +       +   +    + E              
Sbjct: 121 TH-----------------------YRLKNAEDGSGVIVDPAAKLE-------------- 143

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            ++      +      +Y     SY  +       +  MR E        + EF+     
Sbjct: 144 -EELIIRPTSETIIWSTYKNWINSYRDLPILCNQWANVMRWEMRTRLFLRTAEFLWQ--- 199

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                  +++  +         + D       V       +A        L     E   
Sbjct: 200 EGHTAHATREEAETEAQKMLHVYGDFAEKYMAVPVIKGVKSANERFAG-ALDTYTIEGLM 258

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++   +  F   + K  YV   S+G+ + R++ A+I +  D  
Sbjct: 259 QDGKALQCGTSHFLGQNFAKAFNVQFVDKNNKLDYVWATSWGV-STRLMGALIMTHSDDN 317

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ ++ I  +D+  +      E I A+L ++G  V +D+   ++ G +F
Sbjct: 318 GLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLRELGISVKYDNADNKRPGFKF 377

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  +L G P+++++G + + ++ +EI  R T  +E  + E +  Y  +   +
Sbjct: 378 ADYELKGVPVRLVMGGRDLENNTMEIMRRDTLEKETRTCEGIEEYVKNLLED 429


>gi|307565532|ref|ZP_07628012.1| proline--tRNA ligase [Prevotella amnii CRIS 21A-A]
 gi|307345691|gb|EFN91048.1| proline--tRNA ligase [Prevotella amnii CRIS 21A-A]
          Length = 493

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 152/448 (33%), Gaps = 62/448 (13%)

Query: 11  LQENPRDAEIASH---KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L+E  + A+  S     L+++  +  Q +  G     P G    +N+   + +    TG 
Sbjct: 5   LKELTKRADNYSQWYNDLVVKADLAEQSAVRGCMVIKPYGYAIWENIQGQLDKMFKATGV 64

Query: 67  IEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
                P L     L  E+   + + KE                                 
Sbjct: 65  QNAYFPLLIPKSFLSREAEHVEGFAKE--------------------------------- 91

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                T Y+++ K   E        +  E L+    S  +     K+  +      L   
Sbjct: 92  -AAVVTHYRLKTKENGEGVEVDPNAKLEEELIIRPTSETIIWNTYKNWIHSWRDLPLMCN 150

Query: 186 HRLGLKSIPMR----AESGPIGGDLSHEFIV-LADTGETQVFCSKDFMDFPIPSENTDFD 240
               +    MR      +        H       +  E      K + DF          
Sbjct: 151 QWCNVMRWEMRTRPFLRTSEFLWQEGHTAHATKQEAEEEAKLMLKVYADFAEKWLAVPVI 210

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   V+  T  +A   D +         E      + ++ G   + G  ++     
Sbjct: 211 ------QGVKSETERFAGALDTYT-------IEAMMQDGKALQSGTSHFLGQNFAKSFDV 257

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
           TF   + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ +I I   ++ 
Sbjct: 258 TFLNKENKPEYVWATSWGV-STRLIGALIMTHSDDNGLVLPPKIAPIQVVIIPIFKGEEQ 316

Query: 361 CRDACEKIY---ARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 K+      L + G  V +DD   ++ G +FA  +L G P+++ +G + + ++ +
Sbjct: 317 LEQLKNKLQPVIDELREAGVTVKFDDSDNKRPGFKFADYELKGVPVRLAMGGRDLENNTI 376

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
           E+  R T  +E +S + + +Y  H    
Sbjct: 377 EVMRRDTLEKESVSFDGITDYIKHLLDE 404


>gi|330752678|emb|CBL88143.1| prolyl-tRNA synthetase [uncultured Cytophagia bacterium]
          Length = 491

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 138/412 (33%), Gaps = 48/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P       L  E+   + + KE    
Sbjct: 33  GCMIIKPYGFSIWEKMQQQLDIMFKNTGHENAYFPLFIPKSHLSKEADHIEGFAKE---- 88

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                           V+T     + ++ + L         K  DEL  R          
Sbjct: 89  --------------CAVVTHYRLKNDENGKEL---IVDPDAKLEDELIVRP--------- 122

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +      +Y     SY  +   +   +  +R E        + EF+     
Sbjct: 123 --------TSETVIWDTYKNWIQSYRDLPLLINQWANVIRWEMRTRLFLRTTEFL--WQE 172

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ +          + D +     +   T    + S+     +     E   
Sbjct: 173 GHTAHATQEEAI-LETQQMLEVYSDFVEKYMALP-VTKGVKSESERFAGAVDTYCIEALM 230

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++   +  F   +GK+  V   S+G+ + R++ A+I +  D  
Sbjct: 231 QDGKALQAGTSHFLGQNFAKAFNVKFTNKEGKEDLVWGTSWGV-STRLMGALIMAHSDDD 289

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDAC---EKIYARLSKVGCDVFWDDMG-EQIGSQF 392
           G++ P ++AP ++ +I I   ++         EKI   L   G  V +D     + G +F
Sbjct: 290 GLVLPPNLAPIQVVIIPIYKGEEQLERIALKVEKIRNSLISKGISVKFDRRDTHKPGWKF 349

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  +L G PL++ +G K + +  +EI  R T  ++   ++ + +        
Sbjct: 350 AEYELKGVPLRIAIGPKDLDNGTLEIARRDTKEKKSYPVDGIEDKIQFLLKE 401


>gi|153824261|ref|ZP_01976928.1| threonyl-tRNA synthetase [Vibrio cholerae B33]
 gi|126518216|gb|EAZ75441.1| threonyl-tRNA synthetase [Vibrio cholerae B33]
          Length = 345

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 84/231 (36%), Gaps = 8/231 (3%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 120 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 177

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 178 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHIQIFNQGLKSYR 236

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 237 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFC-TEDQIQQEVTSCIKMVYDTY 295

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              G ++I ++  + P     S E     D  E  +  S   MD P   + 
Sbjct: 296 TTFGFQNIVVKLSTRPEKRVGSDEIW---DKSEQALIDSLKAMDIPFEIQE 343


>gi|70607289|ref|YP_256159.1| prolyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
 gi|114152265|sp|Q4J8L4|SYP_SULAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|68567937|gb|AAY80866.1| bifunctional aminoacyl-tRNA synthetase [Sulfolobus acidocaldarius
           DSM 639]
          Length = 483

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 71/420 (16%), Positives = 134/420 (31%), Gaps = 66/420 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRL 96
           G+  WLP G K       +IR+  +  G  E+  P L   DL    G     +  E+  +
Sbjct: 35  GMGVWLPYGFKIRQAAVDLIRKLLDAKGHEEVLFPLLVPEDLLRREGEHIKGFESEVFWV 94

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               ++ +                                                    
Sbjct: 95  TKGGEENLDIRLALRPT------------------------------------------- 111

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                +          SY ++   Y +I      ++   R            E   L +T
Sbjct: 112 --SETAITYMETYWVQSYKQLPKKYYQIVSVFRYETKATRPMIRLREVSTFKEAHTLHET 169

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSI--VEQWTAPYAATSDVHNEKLFDSLPEN 274
            E      +  +   I      F+++     +    +W     A   +  + +       
Sbjct: 170 YEDA----ERQVKEAIEIYKNFFEELGIPYIMSQRPEWDKFAGAIYTIAFDTIMP----- 220

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
               +R +++G + + G  ++       +  DG   Y    SYGI + RV+A  +  + D
Sbjct: 221 ---DSRVLQIGTVHHLGQHFTKAFDLKVQRKDGTLDYPHQTSYGI-SDRVIAVAVSINGD 276

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYARLSKVGCDVFWD-DMGEQIG 389
             G I    +AP K  +I I A D+       +  E +   L   G +   D D  +  G
Sbjct: 277 DHGTILSPVLAPIKAVIIPIPAKDEKETEKIIEYSEDVAKILVSNGINTVIDKDTEKTPG 336

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            ++ + ++ G PL++ +G + +S + V IK R T     +  E +++         R  L
Sbjct: 337 EKYYIWEIKGVPLRIEIGPRELSSNSVFIKRRDTLQGISVKKENLVSEVVKLLETLRKDL 396


>gi|325193707|emb|CCA27955.1| prolyltRNA synthetase putative [Albugo laibachii Nc14]
          Length = 697

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 75/428 (17%), Positives = 140/428 (32%), Gaps = 72/428 (16%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           ++GMI  +   G Y   P   +  + +   +       G      P   S + L  E   
Sbjct: 215 KSGMIEYYDISGCYILRPYSYEIWEKIQGFLDTRIKSIGVKNCYFPIFVSNEKLQREKDH 274

Query: 86  YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +       +       PT E +M   F++ I+S+R+LP    Q     R 
Sbjct: 275 LEGFAPEVAWVTKSGSSDLKEPIAIRPTSETIMYPAFKNWIRSHRDLPLKLNQWNNVVRW 334

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +R+REFL ++ ++   T   +    +++   Y                    
Sbjct: 335 EFKNPTPFIRTREFLWQEGHTAHATKAEADEQVHQILDFY-------------------- 374

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATS 260
                                            E      I  + +  E++  A Y  T 
Sbjct: 375 ----------------------------AAAYEELLAVPMIKGIKTEKEKFAGADYTTTI 406

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +                + RGI+       G  +        +   GK       S+G  
Sbjct: 407 EGFIPS-----------TGRGIQAATSHQLGQNFGKMFGIAAEYEAGKKLIPFQTSWGF- 454

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD----QVCRDACEKIYARLSKVG 376
             R +  +I    D KG++ P  +AP ++ ++ I   D        +  + +   L  VG
Sbjct: 455 TTRSIGIMIMVHGDDKGLVLPPRIAPLQVIIVPIPYKDRQEIDEISNQAKDVCQLLESVG 514

Query: 377 CDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             V  DD      G ++   +L G PL+  +G K V + +V +  R  G++ D+ + E+ 
Sbjct: 515 VRVQVDDRQVYTPGWKYNFWELKGVPLRFEIGPKDVVNRQVRVVRRDNGVKTDIPVYELS 574

Query: 436 NYASHRFS 443
                   
Sbjct: 575 TSIPALLE 582


>gi|300727040|ref|ZP_07060459.1| proline--tRNA ligase [Prevotella bryantii B14]
 gi|299775584|gb|EFI72175.1| proline--tRNA ligase [Prevotella bryantii B14]
          Length = 493

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 63/415 (15%), Positives = 142/415 (34%), Gaps = 48/415 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   + +     G      P L     L  E+     + KE   +
Sbjct: 36  GCMIIKPYGFAIWEKMKEQLDKMFKTKGVQNAYFPLLIPKSFLSREAEHVKGFAKECAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                       + E+  +    S  K    L        + +           ++    
Sbjct: 96  THYR------LKSSEDGNSVEVDSEAKLEEELIIRPTSETIIWN--------TYKNWIHS 141

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +D          +   +      +LR    L  +     A              V AD 
Sbjct: 142 WRDLPIKCNQW-CNVMRWEMRTRPFLRTSEFLWQEGHTAHATREEAEKMAQDMLHVYADF 200

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E  +                    I  + S  E++              L     E   
Sbjct: 201 AEKYMA----------------VPVIQGVKSETERFAG-----------ALDTYTIEAMM 233

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++     T+   + K  YV   S+G+ + R++ A+I +  D  
Sbjct: 234 QDGKALQSGTSHFLGQNFAKSFDVTYLTKENKPEYVWATSWGV-STRLMGALIMTHSDDN 292

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ +I I  +D+      +K+     +L+++G  V +DD   ++ G ++
Sbjct: 293 GLVLPPKLAPVQVVIIPIYKNDEQHEQLNQKLQPVIDQLTELGVSVKYDDADNKRPGFKY 352

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           A  +L G P+++++G + + ++ +E+  R T  +E+++ + ++    +   + + 
Sbjct: 353 ADYELKGVPVRLVMGGRDLENNTIEVMRRDTLEKENVTFDGIVERIKNLLDDIQQ 407


>gi|37359720|dbj|BAC97834.1| glutamyl-prolyl-tRNA synthetase [Oryzias latipes]
          Length = 587

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 75/451 (16%), Positives = 136/451 (30%), Gaps = 79/451 (17%)

Query: 13  ENPRDAEIAS--HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E  ++  +A    +++ +  MI  +   G Y   P      + +     +E  + G    
Sbjct: 92  EAKKEENLADWYSQVITKAEMIEYYDVSGCYVLRPWSYSIWEAIKDFFDKEIKKLGVENC 151

Query: 70  SVPTLQS-ADLWVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKS 124
             P   S A L  E      +  E+  +       +       PT E VM   +   ++S
Sbjct: 152 YFPMFVSQAALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQS 211

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +R+LP    Q     R E +     +R+REFL ++ ++   T E +     ++   Y RI
Sbjct: 212 HRDLPIKLNQWCNIVRWEFKHPQPFLRTREFLWQEGHTAFATKEEATEEVMQILDLYARI 271

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +                                                 E      +  
Sbjct: 272 YE------------------------------------------------ELLAIPVVKG 283

Query: 245 LNSIVEQW-TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
             +  E++    Y  T +                S R I+     + G  +S      F+
Sbjct: 284 RKTEKEKFAGGDYTTTVEAFISA-----------SGRAIQGATSHHLGQNFSKMFEIVFE 332

Query: 304 GADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------- 355
                           G   R +  +     D  G++ P  VA  ++ +I          
Sbjct: 333 DPKRPGEKQLAFQNSWGITTRTIGVLTMVHGDNMGLVLPPRVACVQVVIIPCGITASLPE 392

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +     C K   RL   G  V  D       G +F   +L G P+++ VG K +   
Sbjct: 393 QEKEALLAQCSKYLKRLLDAGVRVKSDFRDNYSPGWKFNHWELKGVPVRLEVGPKDMQQK 452

Query: 415 K-VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + V ++ R +G +  +   EV          
Sbjct: 453 QCVAVR-RDSGAKITLPEGEVEKRLVAMLEE 482


>gi|322786154|gb|EFZ12760.1| hypothetical protein SINV_13030 [Solenopsis invicta]
          Length = 347

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 108/341 (31%), Positives = 169/341 (49%), Gaps = 34/341 (9%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
           A      LM+  G+I   S G+Y+ LPLG + L+ +  ++ +E    GA ++ +P L S 
Sbjct: 11  ARSFVKMLMINYGIIKPVSIGMYALLPLGMRILNKLINLVDKEMTSIGAEKILLPALTSV 70

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQ 136
            LW ++ RYD    E+  L DR+ K  I  PTHEE + D+  S    S ++LP   YQI 
Sbjct: 71  ALWKKTDRYDCNKTELFTLMDRHKKEYILSPTHEEAICDLISSAGQFSAKSLPLKLYQIS 130

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            K+RDE++PR G++RSREF+MKD Y+FD + + ++++YN +  SY  IF ++G++     
Sbjct: 131 SKWRDEMKPRLGLLRSREFIMKDLYTFDTSLDNARYTYNLVCESYNNIFRKIGVEYTKSI 190

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
            + G IGG +SHE+  +++ GE  +   +                               
Sbjct: 191 GDMGTIGGLMSHEYHYISNIGEDTILRCRLCH---------------------------- 222

Query: 257 AATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              S   +     S PE K         EVGH F   TKYS P+ A +   + K   + M
Sbjct: 223 --FSINQSISKTTSCPECKNELHQHTAAEVGHTFLLDTKYSQPLKALYV-EENKSKPMIM 279

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
           GS+G+G  R++   +E       + WP  +AP+ I +I  K
Sbjct: 280 GSFGLGLSRIITLAVEILSTKNELRWPVKLAPYTICVIPPK 320


>gi|118575566|ref|YP_875309.1| prolyl-tRNA synthetase [Cenarchaeum symbiosum A]
 gi|152016594|sp|A0RUI8|SYP_CENSY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|118194087|gb|ABK77005.1| prolyl-tRNA synthetase [Cenarchaeum symbiosum A]
          Length = 476

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/414 (17%), Positives = 139/414 (33%), Gaps = 69/414 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G+    P G    +++   +  +    G     +P L    L   E   +  +  E+  +
Sbjct: 34  GLIVLRPDGYSIWESIRTSLDVKLAARGVRNGFLPVLIPESLLGKEKEHFAGFNPEVFWV 93

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                 +    +   PT E +   ++   IKS+R+LP          R E++     +R+
Sbjct: 94  THSGENKVGDRLALRPTSETLAYSLYSKWIKSWRDLPLRINFWNTALRAEIKSTKPFLRT 153

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++                                                H    
Sbjct: 154 SEFLWQEG-----------------------------------------------HTVHA 166

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            ++  E++V    +     +  +      I    S  E++      T+            
Sbjct: 167 CSEEAESEVAAILELYRETVEGDLA-IPVITGRKSEKEKFVGAVYTTTM----------- 214

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     R +++G   + G  +S P    F   D  +H+    S+G+ + R++ A+I   
Sbjct: 215 ESMMPDGRALQMGTSHFLGQNFSRPFEVKFADKDNVEHFAWQTSWGL-SWRLIGAMIMVH 273

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGE-QI 388
            D KG++ P  VAP ++ +I I    +       A E + A L K G     D   E   
Sbjct: 274 GDDKGLVLPPKVAPLQVVIIPISYSGEEGAQVLAAAEGMEAELLKAGIRARTDKREELTP 333

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G +F   ++ G P+++ +G + + D    +  R  G +  + L+          
Sbjct: 334 GFKFHDWEMRGVPVRIEIGPRDLKDGSAVLATRHDGKKSKVPLDGAAVNIEEEL 387


>gi|198275270|ref|ZP_03207801.1| hypothetical protein BACPLE_01429 [Bacteroides plebeius DSM 17135]
 gi|198271853|gb|EDY96123.1| hypothetical protein BACPLE_01429 [Bacteroides plebeius DSM 17135]
          Length = 496

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 140/415 (33%), Gaps = 48/415 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +  I+ +    TG +    P L     L  E+   + + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQRILDDMFKATGHVNAYFPLLIPKSYLSREAEHVEGFAKECAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +       +   +    + E              
Sbjct: 96  TH-----------------------YRLKNAEDGSGVIVDPAAKLE-------------- 118

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            ++      +      +Y     SY  +       +  MR E        + EF+     
Sbjct: 119 -EELIIRPTSETIIWSTYKNWINSYRDLPILCNQWANVMRWEMRTRLFLRTAEFL--WQE 175

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++         +  + D       V       +A        L     E   
Sbjct: 176 GHTAHATREEAEAEAQKMLHV-YGDFAEKYMAVPVIKGVKSANERFAG-ALDTYTIEGLM 233

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++   +  F   + K  YV   S+G+ + R++ A+I +  D  
Sbjct: 234 QDGKALQCGTSHFLGQNFAKAFNVQFVDKNNKLDYVWATSWGV-STRLMGALIMTHSDDN 292

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ ++ I  +D+  +      E I  +L  +G  V +D+   ++ G +F
Sbjct: 293 GLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVNKLRSMGISVKYDNADNKRPGFKF 352

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           A  +L G P+++++G + + ++ +EI  R T  +E  S + +  Y  +     + 
Sbjct: 353 ADYELKGVPVRLVMGGRDLENNTMEIMRRDTLEKETRSCDGIEEYVQNLLEEIQQ 407


>gi|326471753|gb|EGD95762.1| threonyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 511

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 137/435 (31%), Gaps = 54/435 (12%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
              D         L T  I  +S G   + P G   L+ +   +R +  + G  E+  P 
Sbjct: 42  ASADHRALGTAQDLFTNSI--YSPGSPLFRPNGTHILNKLITFLRAQYKQYGFREVLTPN 99

Query: 74  LQSADLWVESGRYDSYGKEML----------RLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +    LW  SG + +Y  +M                 ++     P +      +F+S   
Sbjct: 100 IYKQSLWEVSGHWQNYKDDMYEVGGRGDTGETSETSENEIYGLKPMNCPGHCLLFKSQKH 159

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  +       R+E+     G+ R R F   D + F    +              
Sbjct: 160 SYRELPVRYADFSPLHRNEVSGSLSGLTRVRRFHQDDGHIFCRPGQIGSE-IQLALKFAD 218

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    GL                    +VL+   E     S +  +          D+ 
Sbjct: 219 TVLQTFGLADGYR---------------LVLSTRPEKDFIGSLEQWENAEQQLRQALDNS 263

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSA 300
                + E   A Y    D+   ++ DS  +  ++S   +++     F            
Sbjct: 264 GLSWELNEGDGAFYGPKIDL---QIQDSQGKYHQLSTIQLDMNLPQRFELEYLVPEGSEE 320

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQ 359
                 G+   V +     G++    A++    +     WP  ++P +  L+ I    +Q
Sbjct: 321 YDPATGGRATPVLIHRAIFGSLERFFALLI---ERYNGQWPFWLSPRQAILLTIGKGLEQ 377

Query: 360 VCRDACEKIY-------ARLSKVG---------CDVFWDDMGEQIGSQFAVADLLGFPLQ 403
              DA  KI        +R S  G          +V  D     +  +   A    + L 
Sbjct: 378 AAEDAVAKISGFEPITSSRPSSTGLPLSPLQPTFNVDLDLASRSLPKKIHDAHAARYNLV 437

Query: 404 VIVGSKFVSDSKVEI 418
            I+G K V+D  V+I
Sbjct: 438 FIMGPKNVADGSVDI 452


>gi|16081983|ref|NP_394395.1| prolyl-tRNA synthetase [Thermoplasma acidophilum DSM 1728]
 gi|74581452|sp|Q9HJN0|SYP_THEAC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|10640252|emb|CAC12066.1| prolyl-tRNA synthetase related protein [Thermoplasma acidophilum]
          Length = 462

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 146/411 (35%), Gaps = 69/411 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G+  WLP G K +  +++I+R   ++    E++ P L    +   E      +  E+  +
Sbjct: 30  GMNVWLPYGWKIMSLIDSIVRRAVDKRNFQEVNFPILIGRSMLEVEFEHIRGFENEIYWV 89

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                ++ ++ +   PT E  M  +F   I+S+ +LP   YQI   +R E +     +R 
Sbjct: 90  TKGGKEKLEEELALRPTSESAMYPMFSLWIRSHADLPLKIYQIVSVYRYETKHTRSFIRI 149

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           RE                                               I    +H    
Sbjct: 150 RE-----------------------------------------------IHFFEAHTAHA 162

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             +  E Q+   K+        E +    +         W     A   +  + +     
Sbjct: 163 TYEDAEAQMDQYKEIW-----REISSLLCLPYFYDQRPDWDKFPGAMYTIAFDTV----- 212

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                S R +++G I  +GT +S      +   DG   Y    +YG+ + R++AA+I   
Sbjct: 213 ---LPSGRSLQIGTIHQYGTNFSKNYDIKYLKEDGTFDYAHQTTYGM-SERLLAAIIGIH 268

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQ 391
            D KG++ P  VAP ++ +I I        +    +   L+ +   V  DD      G +
Sbjct: 269 GDDKGLVLPPDVAPIQVIIIPIPG--AGVMEYARDVENTLNSINIRVKVDDRENYTPGYK 326

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           F   ++ G PL++ +G + V +  + I  R    +  +   ++I       
Sbjct: 327 FNDWEMRGVPLRIEIGEREVKNRTLTISMRNIQGKLTIERSKLIYEVPDTL 377


>gi|302774721|ref|XP_002970777.1| hypothetical protein SELMODRAFT_94171 [Selaginella moellendorffii]
 gi|300161488|gb|EFJ28103.1| hypothetical protein SELMODRAFT_94171 [Selaginella moellendorffii]
          Length = 528

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 145/421 (34%), Gaps = 76/421 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + V + +  +   TG   M  P L     +  E+   + +  E+  +     K
Sbjct: 86  PYGYAIWEFVQSWLDAKFKETGHSNMYFPQLIPYSFIEKETSHVEGFSPELALVTIGGGK 145

Query: 103 AMIY----GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E ++  +F   I+S+R+LP    Q     R E R     +R+ EFL +
Sbjct: 146 ELEEKLVVRPTSETMVNHMFAQWIRSHRDLPLLVNQWANVTRWERR-TKPFIRTLEFLWQ 204

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T + ++    +M   Y                                     
Sbjct: 205 EGHTAHATAQEAEEEALRMIEVYRTF---------------------------------- 230

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                           E      I+   S +E++              +     E     
Sbjct: 231 --------------AVEQAAMPVIVGRKSRLERFAG-----------AICTYTIEAMMGD 265

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G     G  ++      F   +G   ++   S+G+ + R+V  +I +  D KG+
Sbjct: 266 RRALQAGTSHNLGQNFARAFETQFTDVNGDLQHIWQTSWGM-STRMVGGIIMTHGDDKGL 324

Query: 339 IWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
           + P  +AP ++ ++ I       +    A  K+ + +   G  V  D   ++  G +F  
Sbjct: 325 MLPPKLAPIQVVIVPIWKKGDEQEAVLQAAHKVESLVRAAGIRVKLDTFDQRTPGWKFNH 384

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIRED-MSLEEVINYASHRFSNNRPV 448
            +L G P+++ +G K V+++ V +  R             M    +I++   +  + +  
Sbjct: 385 WELKGVPIRIEIGPKDVANNSVVVARRDVPGKAGKEFGIFMDRSVLIDHLRAKLDDIQSS 444

Query: 449 L 449
           L
Sbjct: 445 L 445


>gi|294631964|ref|ZP_06710524.1| prolyl-tRNA synthetase [Streptomyces sp. e14]
 gi|292835297|gb|EFF93646.1| prolyl-tRNA synthetase [Streptomyces sp. e14]
          Length = 470

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 143/412 (34%), Gaps = 67/412 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +       GA     P       L  E+   + +  E+  +     K
Sbjct: 41  PYGYGLWERMQQEMDARIKDAGAANAYFPLFIPQSYLTREAEHVEGFAPELAVVTHGGGK 100

Query: 103 AMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E ++ + F   ++SYR+LP    Q     R E+RPR   +R+ EFL +
Sbjct: 101 ELEEPIVVRPTSETIVNEYFSKWVQSYRDLPLLINQWANVVRWEMRPRV-FLRTTEFLWQ 159

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T                             RA +  I  D+ H+F+V      
Sbjct: 160 EGHTAHAT-------------------------YEDARAYAARIHRDVYHDFMVGV---- 190

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                                D ++   ++ E++       +            E     
Sbjct: 191 ------------------LAIDVVLGRKTVRERFAGAINTLTL-----------EGMMGD 221

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + +++G     G  ++      +   DG+   V   S+G  + R+V  +I S  D  G+
Sbjct: 222 GKALQMGTSHELGQNFAKAFHTQYLSKDGRQELVWQTSWGT-STRMVGGLIMSHGDDSGL 280

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADL 397
             P  +AP +  ++ +K  D        +I  RL   G  V  DD      G +    +L
Sbjct: 281 RVPPRLAPVQAVVLAVKD-DDAVIAKVREIGDRLKAAGVRVQVDDRTDVPFGRRAVDWEL 339

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            G P+++ VG + + +    +  R+ G +  + + E+          ++ +L
Sbjct: 340 KGVPVRIEVGPRDLENGTAMLARRIPGGKAPVRIGEIEALLPKVLEEDQALL 391


>gi|242043016|ref|XP_002459379.1| hypothetical protein SORBIDRAFT_02g003730 [Sorghum bicolor]
 gi|241922756|gb|EER95900.1| hypothetical protein SORBIDRAFT_02g003730 [Sorghum bicolor]
          Length = 530

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/421 (17%), Positives = 142/421 (33%), Gaps = 76/421 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +  +   TG   M  P       +  E+   + +  E+  +     K
Sbjct: 87  PYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGK 146

Query: 103 AMIY----GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E ++  +F   I SYR+LP    Q     R E+R     +R+ EFL +
Sbjct: 147 ELEEKLVVRPTSETIVNHMFTKWIHSYRDLPLMINQWANVTRWEMR-TKPFIRTLEFLWQ 205

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T E ++                                     E + + D   
Sbjct: 206 EGHTAHATLEEAEK------------------------------------EAMQMID--- 226

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                +K   +            I    S VE +                    E     
Sbjct: 227 ---VYTKFAYEHAA------IPVIPGRKSKVETFAG-----------ANRTYTIEAMMGD 266

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G     G  +S      F   +G+  +V   S+ I + R V  +I +  D  G+
Sbjct: 267 KKALQAGTSHNLGQNFSRAFGTQFMDENGQIEHVWQTSWAI-STRFVGGIIMTHGDDAGL 325

Query: 339 IWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
           + P  +AP ++ ++ I           +A + +   L + G  V  DD   +  G +F  
Sbjct: 326 MLPPRIAPIQVIIVPIWKKGDEKSAVLEAVDSVQKILKEAGIRVKVDDSELRTPGWKFNH 385

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIRE-----DMSLEEVINYASHRFSNNRPV 448
            ++ G P+++ +G + V++  V +  R   G +       M    ++N+   R  + +  
Sbjct: 386 YEMKGVPVRIEIGPRDVTNKSVVVSRRDVPGKQGKEFGVSMEPSILVNHIKGRLDDIQAS 445

Query: 449 L 449
           L
Sbjct: 446 L 446


>gi|46108902|ref|XP_381509.1| hypothetical protein FG01333.1 [Gibberella zeae PH-1]
          Length = 548

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 85/216 (39%), Positives = 122/216 (56%), Gaps = 1/216 (0%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           +  H+ ++R G + Q   GI+  LPLG +  D +  +I +  +  GA  +S+ T+ S +L
Sbjct: 1   MVGHEKLIRGGFLRQAHSGIFQLLPLGLRVQDKIEKLIDKHMHSVGASRLSLSTISSEEL 60

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  S R DS   E+ RL DR D  +I  PTHEE +T +    + SY++LP   YQI  K+
Sbjct: 61  WRRSNRLDSVAPELFRLKDRKDTPLILSPTHEEEITTLVAGIVNSYKDLPIRLYQITRKY 120

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE RPR G++RSREFLMKD Y+FDLT   +  +Y ++  +Y   F  L L  +   A S
Sbjct: 121 RDERRPRHGLLRSREFLMKDLYTFDLTTSEAVETYRQVSGAYRAFFAELKLPYLIAEASS 180

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           G +GGDLSHE+ + +  GE  V       D+    E
Sbjct: 181 GDMGGDLSHEYHLPSAVGEDSVVSCDSC-DYTANDE 215



 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 26/198 (13%)

Query: 269 DSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGA--------------DGKDHY 311
           D  P          + +E GH F  GT+YS+P+ A                    G    
Sbjct: 354 DGCPRCDKGTLKIHKALECGHTFQLGTRYSVPLDACVDLPRSGLPEAAVEEGLTPGSRVP 413

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           VQMG +G+G  R+  AV E   D +G+ WP ++APF++++I          D    IY  
Sbjct: 414 VQMGCHGVGVSRIFGAVAEILADERGLNWPRAIAPFEVTIIPSNGLADEPLD----IYDT 469

Query: 372 LSKV-----GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           LSK      G DV  DD     G +   AD++G+P+ VI+G  F  +   E++ R   ++
Sbjct: 470 LSKNNGSQSGFDVVLDDRKRSFGWKMKDADMVGYPVLVILGKSFKENGTCEVQCRRLSVK 529

Query: 427 EDMSLEEVINYASHRFSN 444
           +++ ++E+  + S     
Sbjct: 530 DNVKVDELPEFISSLLDK 547


>gi|296423870|ref|XP_002841475.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637715|emb|CAZ85666.1| unnamed protein product [Tuber melanosporum]
          Length = 658

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 95/276 (34%), Gaps = 22/276 (7%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +   RD      +  L     H+ S G   +LP G +  + +   +R+E  + G  E+
Sbjct: 297 LEEAAKRDHRKIGKEQELF--FFHELSPGSCFFLPHGTRIYNTLVGYLRQEYWKRGYEEV 354

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + +A LW  SG + +Y + M       DK     P +      +F    +SYR LP
Sbjct: 355 ITPNMYNAKLWETSGHWQNYQENMFTFEVEKDK-YGLKPMNCPGHCLLFGHRERSYRELP 413

Query: 130 FTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           +      +  R+E      G+ R R F   D + F    +      + +F     ++  L
Sbjct: 414 WRVADFGVIHRNEFSGALTGLTRVRRFQQDDTHVFCTEEQVGSE-IHGLFDFLKTVYGLL 472

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           G     ++  + P         I   D+ E Q+            + +           +
Sbjct: 473 GFTF-KLKLSTRPEKFVGD---IATWDSAEAQL----------TKALDEFTAGGGGKWEM 518

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                A Y    D+    + D+L    +     +E 
Sbjct: 519 NPGDGAFYGPKIDI---TISDALRREHQSILGSVER 551


>gi|32399017|emb|CAD98257.1| aminoacyl-tRNA synthetase, probable [Cryptosporidium parvum]
          Length = 688

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 146/436 (33%), Gaps = 69/436 (15%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ-SADLWV 81
           ++++++ MI  +   G Y   P      + + ++  ++  +        P       L  
Sbjct: 209 QVIVKSEMIEYYDISGCYILRPWSYFIWETIQSVFDQKIKQHDVQNAYFPIFVTQKKLET 268

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +       +       PT E +M   F   I+S+R+LP    Q   
Sbjct: 269 EKDHVEGFSPEVAWVTKSGKSDLAEPIAIRPTSETIMYPYFAKWIRSHRDLPLKINQWTS 328

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++                             G  +   R 
Sbjct: 329 IVRWEFKHPTPFIRTREFLWQE-----------------------------GHTAHSTRK 359

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           E+  +   + +E+  + +                   +      +    S  E++     
Sbjct: 360 EALEMVDIILNEYASIYE-------------------DLLATPVVKGTKSENEKFPGG-- 398

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                  + +   +PE      R ++       G  +S      F+   G   Y    S+
Sbjct: 399 ----DITKSIEGFIPE----IGRAVQAATSHLLGQNFSKMFGVEFEDEKGNKEYAHQTSW 450

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSK 374
           G+   R +  +I +  D KG++ P  VAP ++ +I I       +  +  C ++   L K
Sbjct: 451 GL-TTRAIGVMIMTHGDNKGLVLPPKVAPVQVIIIPIIFKTVITEEQKKICNEVECILKK 509

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V  DD      G ++   ++ G  L+  VG + +    V +  R    + D+ + E
Sbjct: 510 AGVRVKIDDRSNYTPGWKYNHWEVKGVCLRFEVGPRDIEKRSVRVVVRDNMEKMDIPISE 569

Query: 434 VINYASHRFSNNRPVL 449
           + +         +  L
Sbjct: 570 LESKIPKLLEEFQNRL 585


>gi|315648100|ref|ZP_07901201.1| prolyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315276746|gb|EFU40089.1| prolyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 485

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 141/414 (34%), Gaps = 69/414 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  +++ A +      TG      P       +  E    + +  E+  +
Sbjct: 42  GCIVFKPDGYEIWEHIQAELDRRFKATGHRNAYFPLFIPESFFQKEKEHVEGFNPELPWV 101

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
            +    + ++ +   PT E +   ++   I+SYR+LP    Q     R E R     +R+
Sbjct: 102 TEAAGEKLEERLAIRPTSETMFGHMYSKWIQSYRDLPVLINQWANVVRWEKR-TLPFLRT 160

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T                                          E   
Sbjct: 161 SEFLWQEGHTAHET------------------------------------------EVEA 178

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             +T +      +   D+           I    +  E++              +     
Sbjct: 179 RGETMQMLDIYQQFVEDYLA------IPVIKGQKTPSEKFAG-----------AVDTFSI 221

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      R ++ G   Y GT +S      +   +    Y    S+G+ + R++ ++I   
Sbjct: 222 EAMMKDGRAVQAGTSHYMGTNFSQAFEIQYLNRENTLEYAHTTSWGV-STRLIGSLIMVH 280

Query: 333 HDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIG 389
            D +G++ P  VAP ++ +I I      +      ++++  L   G  V  DD    + G
Sbjct: 281 GDDRGLVLPPKVAPTQVIMIPIGPPKTREAVVGRTDELFRELKSAGIRVRVDDNPDVRPG 340

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +F   ++ G P+++ +G + + +    +  R+TG ++ +    +     +   
Sbjct: 341 WKFNEYEMRGVPVRLEIGPRDMENGVCVLVSRITGEKKIVEQANLTQEVQNMLE 394


>gi|189347188|ref|YP_001943717.1| prolyl-tRNA synthetase [Chlorobium limicola DSM 245]
 gi|259511580|sp|B3EE36|SYP_CHLL2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189341335|gb|ACD90738.1| prolyl-tRNA synthetase [Chlorobium limicola DSM 245]
          Length = 481

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 150/420 (35%), Gaps = 69/420 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG +    P       +  E+   + +  E   +
Sbjct: 33  GCMVIRPNGYAIWEKMQAALDAMFKETGHVNAYFPLFIPESYIAKEAEHIEGFAPECAVV 92

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E ++   ++  I+SYR+LP    Q     R E+R R  + R+
Sbjct: 93  THGGGEELAEKLYVRPTSETIIWASYKKWIQSYRDLPILINQWANVVRWEMRTRLFL-RT 151

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E +     +M   Y                         + E++ 
Sbjct: 152 TEFLWQEGHTAHATKEEASEEVLRMITIYK----------------------KFAEEYMA 189

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        I+   +  E++                    
Sbjct: 190 --------------------------LPVIMGRKTESEKFAG-----------ADETFCI 212

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   + G  ++      F+ + G+  +V   S+G+ + R++ A+I + 
Sbjct: 213 EAMMQDGKALQAGTSHHLGQNFAKAFDCQFQTSAGELDFVWATSWGV-STRLIGALIMAH 271

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGE-QIGS 390
            D +G++ P  +A  ++ +I I   D+    +  + I   L K G   F D   +   G 
Sbjct: 272 SDDRGLVLPPKLASRQVVVIPILRGDKTAVLEQADAIVCTLKKHGIPAFVDSSDQNSPGW 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-VINYASHRFSNNRPVL 449
           +FA  +L G PL++ +G + ++  K  +  R T  + ++ L++      S   ++ +  L
Sbjct: 332 KFAEYELQGIPLRIELGPRDLAGKKCVVARRDTLEKTELPLDDTFSMQVSEILNSIQQNL 391


>gi|120437069|ref|YP_862755.1| prolyl-tRNA synthetase [Gramella forsetii KT0803]
 gi|152112923|sp|A0M4Z3|SYP_GRAFK RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|117579219|emb|CAL67688.1| prolyl-tRNA synthetase [Gramella forsetii KT0803]
          Length = 492

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/416 (14%), Positives = 131/416 (31%), Gaps = 45/416 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G     P G    + + A +      TG      P      L+      +    E     
Sbjct: 33  GCMVIKPYGYAIWEKMQAELDRMFKETGHQNAYFPLFVPKHLFEA----EEKNAEGFAKE 88

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
                        ++    +     K    L                             
Sbjct: 89  CAVVTHYRLKNDPDKPGKLMVDPDAKLEEELVVRPT------------------------ 124

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                   +     ++Y     SY  +  ++   +  +R E        + EF+     G
Sbjct: 125 --------SEAIIWNTYKNWIQSYRDLPIKVNQWANVVRWEMRTRLFLRTAEFL--WQEG 174

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            T      + ++      N  + +       +         +       L     E    
Sbjct: 175 HTAHATKDEALEE-TELMNNIYAEFAENFMAMPVVKGSKTESERFAG-ALETYCIEALMQ 232

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + ++ G   + G  ++      F   +G   +V   S+G+ + R++ A+I +  D  G
Sbjct: 233 DGKALQAGTSHFLGQNFAEAFDVKFATKEGGLEHVWATSWGV-STRLMGALIMTHSDDNG 291

Query: 338 IIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVGCDVFWDDM-GEQIGSQFA 393
           ++ P ++AP ++ ++ I   ++      +   ++   L  VG  V +D+   ++ G +FA
Sbjct: 292 LVLPPNLAPIQVVIVPIYRSEEQLDQISEVANELVKELRAVGVSVKFDNNDNQKPGWKFA 351

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             +L G PL++ +G K +    VE+  R T  +E ++  EV+       +  +  L
Sbjct: 352 QYELQGVPLRLAIGPKDLEKGTVELARRDTLTKEFVNRSEVVEKIKALMTEIQDSL 407


>gi|288925105|ref|ZP_06419041.1| proline--tRNA ligase [Prevotella buccae D17]
 gi|288338295|gb|EFC76645.1| proline--tRNA ligase [Prevotella buccae D17]
          Length = 493

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 146/430 (33%), Gaps = 84/430 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   + +    TGA     P L     L  E+     + KE   +
Sbjct: 36  GCMIIKPYGFAIWEKMKEQLDKMFKETGAQNAYFPLLIPKSFLSREAEHVKGFAKECAVV 95

Query: 97  AD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                               R D+ +I  PT E ++ + +++ I S+R+LP    Q    
Sbjct: 96  THYRLKSSEDGCSVEVDPAARLDEELIIRPTSETIIWNTYKNWIHSWRDLPIMCNQWCNV 155

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R                                 +      +LR    L  +     A 
Sbjct: 156 MR---------------------------------WEMRTRPFLRTSEFLWQEGHTAHAT 182

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                 +      V A   E             +P           +   V+  T  +A 
Sbjct: 183 REEAEEEAKKMLHVYAKFAE---------EWMAVP-----------VVQGVKSETERFAG 222

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
             D +         E      + ++ G   + G  ++     T+   D K  YV   S+G
Sbjct: 223 ALDTYT-------IEAMMQDGKALQSGTSHFLGQNFAKSFDVTYLNKDNKPEYVWATSWG 275

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKV 375
           + + R++ A+I    D  G++ P  +AP ++ +I I   +   +    K+     RL  +
Sbjct: 276 V-STRLMGALIMVHSDDNGLVLPPKLAPIQVVIIPITKGNDQLQAINAKLQPVIDRLRDM 334

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +DD   ++ G +FA  +L G P+++++G + + D+ +EI  R T  +E +S + +
Sbjct: 335 GISVKYDDADNKRPGFKFADYELKGVPVRLVMGGRDLEDNTIEIMRRDTLEKESVSFDGI 394

Query: 435 INYASHRFSN 444
                    +
Sbjct: 395 AERVEGLLED 404


>gi|66475910|ref|XP_627771.1| proline-tRNA synthetase; class II aaRS (ybak RNA binding domain
           plus tRNA synthetase) [Cryptosporidium parvum Iowa II]
 gi|46229315|gb|EAK90164.1| proline-tRNA synthetase; class II aaRS (ybak RNA binding domain
           plus tRNA synthetase) [Cryptosporidium parvum Iowa II]
          Length = 719

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 146/436 (33%), Gaps = 69/436 (15%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ-SADLWV 81
           ++++++ MI  +   G Y   P      + + ++  ++  +        P       L  
Sbjct: 240 QVIVKSEMIEYYDISGCYILRPWSYFIWETIQSVFDQKIKQHDVQNAYFPIFVTQKKLET 299

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +       +       PT E +M   F   I+S+R+LP    Q   
Sbjct: 300 EKDHVEGFSPEVAWVTKSGKSDLAEPIAIRPTSETIMYPYFAKWIRSHRDLPLKINQWTS 359

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL ++                             G  +   R 
Sbjct: 360 IVRWEFKHPTPFIRTREFLWQE-----------------------------GHTAHSTRK 390

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           E+  +   + +E+  + +                   +      +    S  E++     
Sbjct: 391 EALEMVDIILNEYASIYE-------------------DLLATPVVKGTKSENEKFPGG-- 429

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                  + +   +PE      R ++       G  +S      F+   G   Y    S+
Sbjct: 430 ----DITKSIEGFIPE----IGRAVQAATSHLLGQNFSKMFGVEFEDEKGNKEYAHQTSW 481

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSK 374
           G+   R +  +I +  D KG++ P  VAP ++ +I I       +  +  C ++   L K
Sbjct: 482 GL-TTRAIGVMIMTHGDNKGLVLPPKVAPVQVIIIPIIFKTVITEEQKKICNEVECILKK 540

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V  DD      G ++   ++ G  L+  VG + +    V +  R    + D+ + E
Sbjct: 541 AGVRVKIDDRSNYTPGWKYNHWEVKGVCLRFEVGPRDIEKRSVRVVVRDNMEKMDIPISE 600

Query: 434 VINYASHRFSNNRPVL 449
           + +         +  L
Sbjct: 601 LESKIPKLLEEFQNRL 616


>gi|312212761|emb|CBX92844.1| similar to prolyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 610

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 140/275 (50%), Gaps = 4/275 (1%)

Query: 2   RRSKYFLPILQENPRDAEIA-SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           R SK++ P    +P+D E   SH L++R G + Q   G++  LPLG +    + A+I + 
Sbjct: 42  RLSKFWAPTGGISPQDGEQDDSHALLVRGGFLRQAHSGVFHLLPLGLRVQSKLEALIDKH 101

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            +   A ++S+  + +  LW +SGRY S   E+LR+ DR +   +  PTHEE +T +  S
Sbjct: 102 MSSISASKVSLSFITTEALWRQSGRY-SANSELLRINDRKESGFLLSPTHEEEITALVAS 160

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY++LP   YQI  K+RDE RPR G++R++EF+MKD Y+FD     +  +Y ++  +
Sbjct: 161 TVHSYKDLPLRLYQIGRKYRDERRPRQGLLRAKEFMMKDLYTFDTDANAALKTYEQVRQA 220

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS--ENTD 238
           Y  +F  L +  +   A+SG +GG LSHE+  ++  GE  V+              E   
Sbjct: 221 YNNLFDELRIPYLVADADSGNMGGKLSHEYHFISPKGEDNVWSCDSCSYVANEELVEKRA 280

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                  +S        +   S  H   +   +P 
Sbjct: 281 PPPPSDSDSSKNTEVIVFTGISTDHTTAINIHIPR 315



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 35/209 (16%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVA 326
               P       R IE+ H F+ GT+YS P+SA F   DG     + MG +GIG  R+V 
Sbjct: 404 CPRCPSGTLNPHRAIEIAHTFHLGTRYSDPLSAVFAPRDGTAKLAMHMGCHGIGLSRIVG 463

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG---------- 376
           AV     D +G+ WP            +        +   ++Y  L   G          
Sbjct: 464 AVAGLLCDERGLNWP---RVMAPFECVVLGGGGEEGEVAGRVYDGLVFGGRDGAAPGGVD 520

Query: 377 --------------------CDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                                D   DD  G+ +G +   ADL+G+P+ V+VG  +    +
Sbjct: 521 NADATAPAAAAAVDADTVQPIDTILDDRPGKSLGWKLRDADLIGYPVVVVVGRAWRERGE 580

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           VE++ R  G++ D+S+ EV          
Sbjct: 581 VEVQCRRLGVKRDVSVSEVRGVVGDLLEK 609


>gi|255009422|ref|ZP_05281548.1| prolyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313147182|ref|ZP_07809375.1| prolyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313135949|gb|EFR53309.1| prolyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
          Length = 497

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 146/426 (34%), Gaps = 49/426 (11%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +   + + KE   +                          +       +   +    + E
Sbjct: 82  AEHVEGFAKECAVVTH-----------------------YRLKNAEDGSGVVVDPAAKLE 118

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                          ++      +     ++Y     SY  +       +   R E    
Sbjct: 119 ---------------EELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+     G T     ++  +  I   N    D       V       +A    
Sbjct: 164 LFLRTAEFL--WQEGHTAHATREEAEEEAIRMLNVYA-DFAEKYMAVPVVKGVKSANERF 220

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L     E      + ++ G   + G  ++      F   + K  YV   S+G+ + 
Sbjct: 221 AG-ALDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I  +D+         E I A+L  +G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISV 338

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E ++ + +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCDGIETYV 398

Query: 439 SHRFSN 444
            +    
Sbjct: 399 QNLLEE 404


>gi|261367962|ref|ZP_05980845.1| proline--tRNA ligase [Subdoligranulum variabile DSM 15176]
 gi|282569944|gb|EFB75479.1| proline--tRNA ligase [Subdoligranulum variabile DSM 15176]
          Length = 479

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/410 (15%), Positives = 129/410 (31%), Gaps = 65/410 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G     P G    +N+   +      TG   +++P L    L  + G             
Sbjct: 40  GFVVLRPYGYAIWENIQKNLDARFKATGHENVAMPMLMPESLLKKEG------------- 86

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
                 ++ G   E                              E       +R     +
Sbjct: 87  -----ELVNGFAPEV---------------------AWVTMGGSEPLEERLAVRPTSETL 120

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
              +   +                +  + +           +        H     A+  
Sbjct: 121 FCDHFSHVLHSYRDLPMLYNQWCSVVRWEKSTRPF----LRTREFWWQEGHTIHETAEEA 176

Query: 218 ----ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               E Q+ C  DF +      +     I    +  E++    A  +            E
Sbjct: 177 KAETEQQLNCYADFCEN-----DLCIPVIKGRKTDKEKFAGAEATYT-----------IE 220

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 + ++ G   YFG K+S     TF G D    Y    S+G  + R++ A+I +  
Sbjct: 221 AMMKDGKALQSGTSHYFGDKFSRAYDVTFTGRDNTLQYPFQTSWGA-SSRLIGAIIMTHG 279

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  G+I P ++AP ++ ++ + AH     +   ++ A + K    V  DD  +Q G +FA
Sbjct: 280 DDDGLILPPAIAPVQVVIVPVAAHKPGVLEKSRELAAEIGKY-ARVKLDDSDKQPGWKFA 338

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             ++ G P+++ VG + +   +  +  R T  ++ +  E++ +       
Sbjct: 339 QWEMKGVPIRLEVGPRDIEQGQCVLVRRDTREKQFVKFEDLASAIPAALE 388


>gi|229819712|ref|YP_002881238.1| tRNA synthetase class II (G H P and S) [Beutenbergia cavernae DSM
           12333]
 gi|229565625|gb|ACQ79476.1| tRNA synthetase class II (G H P and S) [Beutenbergia cavernae DSM
           12333]
          Length = 409

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/430 (16%), Positives = 132/430 (30%), Gaps = 33/430 (7%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D       L L      +   G+  WLP G      + A   E+   +G   +  P L  
Sbjct: 4   DHRRLGRDLGLFAT-SAEVGAGLPLWLPDGAVIRGELEAFSLEQALASGCRRVYTPVLAK 62

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             L+  SG +  +  EM        ++++  P +    T +F +  +SYR+LPF   ++ 
Sbjct: 63  RSLFERSGHWAKFSGEMFPEMPLGGESLVLRPVNCPHHTQVFAAEGRSYRDLPFRLAEVG 122

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR EL    G +     +  D       P+           +    +  LG+     R
Sbjct: 123 SMFRSELSGVVGGLSRVRQINLDDAHSFCAPDQVADEVALALRAIRHCYDVLGIDVAYYR 182

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                  G                                   D++      VE   A Y
Sbjct: 183 LSVRGDSGS---------------YLGDDASWHRSERYLREALDELGLPYERVEGEAAIY 227

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
               DV   ++ D+    + +S   ++      FG         T+ G DG  H   +  
Sbjct: 228 GPKIDV---QVADARGREETLSTVQVDEQMPGRFG--------LTYTGDDGARHRPVLVH 276

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            G+ +       +    +      P  +AP ++ ++ +        DA   +   L++ G
Sbjct: 277 RGLLSSMERMTALL--VELHDGRMPTWLAPVQVRVLPVADRHA---DAAGALRDELARAG 331

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                      +G +   A         ++G   ++   V++    T +R   ++   + 
Sbjct: 332 VRAEV-SHDGSLGRRIRDARERRDTYLAVLGDGELASGTVDVTAPATQVRAAPAVAAFVR 390

Query: 437 YASHRFSNNR 446
             +      R
Sbjct: 391 ELAAEIRERR 400


>gi|118401186|ref|XP_001032914.1| prolyl-tRNA synthetase family protein [Tetrahymena thermophila]
 gi|89287259|gb|EAR85251.1| prolyl-tRNA synthetase family protein [Tetrahymena thermophila
           SB210]
          Length = 691

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/437 (16%), Positives = 145/437 (33%), Gaps = 69/437 (15%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ-SADLW 80
            +++ ++ MI  +   G Y   P      + +     +            P       L 
Sbjct: 213 KQVITKSEMIEYYDISGCYILRPHAYAIWEIIQRFFDDIIKGFDVQNAYFPMFVTDKALN 272

Query: 81  VESGRYDSYGKEMLRLADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +       +       PT E +M   +   IKS+R+LP    Q  
Sbjct: 273 KEKEHVEGFSPEVAWVTRSGSTDLPEPIAVRPTSETIMYPAYSKWIKSHRDLPLKLNQWT 332

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++   T   +      +   Y R++           
Sbjct: 333 NVVRWEFKDPTPFIRTREFLWQEGHTAHATDAEATEFTFLIQDQYRRVYE---------- 382

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                                                 E      I  + S  E++   Y
Sbjct: 383 --------------------------------------ELLAVPVIKGVKSENEKFPGAY 404

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                  +  +   +P N     R ++     + G  +S     +F   + K  Y    S
Sbjct: 405 ------FSSTIETCIPANG----RAVQAATSHHLGQNFSKMFDISFLDGEKKKQYAYQTS 454

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLS 373
           +G+   R +  +I    D KG++ P  VA  ++ ++ I    A ++   +   ++ A L 
Sbjct: 455 WGL-TTRTIGVMILYHGDDKGLVLPPLVASTQVVIVPIIKTGADNERVLNKAHELKAELK 513

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           K G  V  DD      G +F   ++ G PL+  +G   +  +++    R+   +E +  E
Sbjct: 514 KAGIRVQVDDRDNYTSGWKFNHWEVKGIPLRFEIGQMDMDKNQITAVWRVNSHKEAIPNE 573

Query: 433 EVINYASHRFSNNRPVL 449
            +I     R    + ++
Sbjct: 574 SIIETTKLRLKEIQDLM 590


>gi|327293177|ref|XP_003231285.1| threonyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326466401|gb|EGD91854.1| threonyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 526

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 137/435 (31%), Gaps = 54/435 (12%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
              D         L T  I  +S G   + P G   L+ +   +R +  + G  E+  P 
Sbjct: 57  ASADHRALGTAQDLFTNSI--YSPGSPLFRPNGTHILNKLITFLRAQYKQYGFREVLTPN 114

Query: 74  LQSADLWVESGRYDSYGKEML----------RLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           +    LW  SG + +Y  +M                 ++     P +      +F+S   
Sbjct: 115 IYKQSLWEVSGHWQNYKDDMYEVGGRGDTGDTGETSENEIYGLKPMNCPGHCLLFKSQKH 174

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR LP  +       R+E+     G+ R R F   D + F    +              
Sbjct: 175 SYRELPVRYADFSPLHRNEVSGSLSGLTRVRRFHQDDGHIFCRPGQIGSE-IQLALKFAD 233

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            +    GL                    +VL+   E     S +  +          D+ 
Sbjct: 234 TVLQTFGLADGYR---------------LVLSTRPEKDFIGSLEQWENAEQQLRQALDNS 278

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSA 300
                + E   A Y    D+   ++ DS  +  ++S   +++     F            
Sbjct: 279 GLSWELNEGDGAFYGPKIDL---QIQDSQGKYHQLSTIQLDMNLPQRFELDYLVPEGSEE 335

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQ 359
                 G+   V +     G++    A++    +     WP  ++P +  L+ I    +Q
Sbjct: 336 YDPATGGRATPVLIHRAIFGSLERFFALLI---ERYNGQWPFWLSPRQAILLTIGKGLEQ 392

Query: 360 VCRDACEKI-------YARLSKVG---------CDVFWDDMGEQIGSQFAVADLLGFPLQ 403
              DA  KI        +R S  G          +V  D     +  +   A    + L 
Sbjct: 393 TAEDAVAKISGFEPITSSRPSSTGLPLSPLQPTFNVDLDLASRSLPKKIHDAHAARYNLV 452

Query: 404 VIVGSKFVSDSKVEI 418
            I+G K V+D  V+I
Sbjct: 453 FIMGPKNVADGSVDI 467


>gi|313158764|gb|EFR58151.1| proline--tRNA ligase [Alistipes sp. HGB5]
          Length = 494

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/429 (14%), Positives = 140/429 (32%), Gaps = 49/429 (11%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VE 82
           L+++ G+    +  G     P G    + ++  + +    TG      P       +  E
Sbjct: 22  LVVKAGLAENSAVRGCMVIKPYGYAIWEKMHDALDKMFKDTGHQNAYFPLFIPKSFFSKE 81

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +   + + KE   +                          +   +       +    + E
Sbjct: 82  AHHVEGFAKECAVVTH-----------------------YRLKNDPEGKGVVVDPDAKLE 118

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                                        ++Y     SY  +       +  +R E    
Sbjct: 119 EELIVRPTS---------------ETIIWNTYKNWIQSYRDLPILCNQWANVVRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+     G T     ++ ++      +  +         +       +     
Sbjct: 164 LFLRTAEFL--WQEGHTAHATREEAVEEAEKMIHV-YQRFAEEWMSLPVVVGHKSPNERF 220

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              +   ++ E      + ++ G   + G  ++      +   +GK  YV   S+G+ + 
Sbjct: 221 AGAEDTLTI-EALMQDGKALQSGTSHFLGQNFAKAFDVQYVNKEGKLEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ +I I   D    +     E I A+L   G  V
Sbjct: 279 RLMGALIMAHSDNNGLVLPPKLAPIQVVMIPIYKGDDQLAEIRTRFEAIAAQLKAKGISV 338

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             DD    + G +FA  +L G P+++ +G + + +  +E+  R T  ++ +S E ++   
Sbjct: 339 KIDDRDNVRSGFKFAEYELKGVPVRLAMGPRDMENGTIELVRRDTLEKQTVSQEGLVERI 398

Query: 439 SHRFSNNRP 447
               +  + 
Sbjct: 399 EGLMTEIQE 407


>gi|281420331|ref|ZP_06251330.1| proline--tRNA ligase [Prevotella copri DSM 18205]
 gi|281405633|gb|EFB36313.1| proline--tRNA ligase [Prevotella copri DSM 18205]
          Length = 493

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/419 (14%), Positives = 138/419 (32%), Gaps = 52/419 (12%)

Query: 34  QHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYG 90
           + S   G     P G    + +   + +   +TG      P L     +  E+     + 
Sbjct: 30  ELSPVRGCMIIKPYGYAIWEKMQQQLDKMFKQTGVQNAYFPLLIPKSFFSREAEHVAGFA 89

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           KE   +     ++   G   E          +          +     +           
Sbjct: 90  KECAVVTHYRLRSTEDGKEVEVDPNAKLDEELIIRPTSETIIWNTYKNW----------- 138

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
                     +S+   P       N M             + +     +           
Sbjct: 139 ---------IHSWRDLPILCNQWCNVMRWEMRTRPFLRTSEFLWQEGHT----------- 178

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTD-FDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              A   E +    +    +   +EN      +  + S  E++              L  
Sbjct: 179 -AHATKEEAEAKAQEMLKVYAEFAENYMGVPVLQGVKSETERFAG-----------ALNT 226

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E      + ++ G   + G  ++     T+   + K  YV   S+G+ + R++ A+I
Sbjct: 227 YTIEAMMQDGKALQSGTSHFLGQNFAKSFDVTYLNKENKPEYVWATSWGV-STRLMGALI 285

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMG- 385
               D  G++ P  +AP ++ ++ I   D+       K+     +L ++G  V +DD   
Sbjct: 286 MVHSDDNGLVLPPKLAPIQVVIVPINKGDEQLAQITAKLQPVIDQLRELGITVKYDDNPA 345

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G +FA  +L G P+++ +G + + ++ +EI  R T  +E++S + ++    +   +
Sbjct: 346 KRPGFKFADYELKGVPVRLAMGGRDLENNTIEIMRRDTLEKENVSFDGIVELVKNMLED 404


>gi|50284855|ref|XP_444855.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524157|emb|CAG57748.1| unnamed protein product [Candida glabrata]
          Length = 673

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/470 (16%), Positives = 153/470 (32%), Gaps = 96/470 (20%)

Query: 12  QENPR-------DAEIAS----HKLMLRTGMIHQHS-----------KGIYSWLPLGQKA 49
           +E P        DA++        L   +G   Q              G Y   P     
Sbjct: 154 KEKPAQTNAAIEDAKLIGITVDKSLD-FSGWYQQVVTKGEMLDYYDISGCYILRPNSYAI 212

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----DRNDKAM 104
            +++      +    G      P   S+  L  E    + +  E+  +        ++ +
Sbjct: 213 WESIQDYFNAKIKAIGVKNAYFPMFVSSRVLEKEKDHVEGFAPEVAWVTRAGSSELEEPI 272

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD 164
              PT E V+   +   I+SYR+LP    Q     R E +     +R+REFL ++ ++  
Sbjct: 273 AIRPTSETVIYPYYAKWIQSYRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQEGHTAF 332

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           L  + ++    ++   Y  I++                                      
Sbjct: 333 LDQDDAEKEVLQVLDFYAGIYN-------------------------------------- 354

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                     E      +    +  E++      T       +   +PE    + RGI+ 
Sbjct: 355 ----------ELLAVPVVKGKKTEKEKFAGAAFTT------TVEGYIPE----TGRGIQG 394

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIG-AMRVVAAVIESSHDGKGIIWPD 342
               + G  +S   + + +   G +H          G + R +  ++ +  D KG++ P 
Sbjct: 395 ATSHHLGQNFSKMFNLSVENPLGPEHPKVYAYQNSWGLSTRTLGVMVMTHSDNKGLVVPP 454

Query: 343 SVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWD-DMGEQIGSQFAV 394
            VA  +  +I +    +   +       A + +  RL K     F D +     G +F+ 
Sbjct: 455 RVAQHQAVVIPVGITKKTTDEQRKSIHDAAKNVEDRLLKASVRAFGDYNDNYTPGWKFSQ 514

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +L G PL+V +G K +   +V +  R    +  + L+E+ +        
Sbjct: 515 YELKGIPLRVELGPKDIEQGQVVVVRRNDSRKYVVKLDELESRIPEIMDE 564


>gi|295704482|ref|YP_003597557.1| threonyl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294802141|gb|ADF39207.1| threonyl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 296

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 115/321 (35%), Gaps = 35/321 (10%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           ++   R+ +    +L L   M  + + G+  +LP G    + +    +++  + G  E+ 
Sbjct: 5   MEAEKRNHQKLGQELELFMSM--EEAPGMPFFLPNGMIVRNELENYWKQKHYKAGYQEIK 62

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +   +LW +SG ++ Y + M   ++ + +     P +      +F S  +SYR LP 
Sbjct: 63  TPIMMKQELWEQSGHWEHYHENM-YFSNVDKQNYAIKPMNCPGAILLFNSKRRSYRELPV 121

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            + ++ L  R EL     G++R R F   DA+ F         +     ++++  F+   
Sbjct: 122 RYAELGLVHRHELSGSLNGLLRVRSFTQDDAHLFV--ELSQIEAEISRILAFIHDFYSHF 179

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +   + P       E    A+     V                   +      + 
Sbjct: 180 GFDYKVELSTRPEKFMGDIETWNQAEKSLQSVLI-----------------EKGLDYQVN 222

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E   A Y    D H   + DSL  + +     ++    F    K+       + G D K 
Sbjct: 223 EGDGAFYGPKIDFH---ILDSLGRSWQCGTVQLD----FLMPEKFDCM----YIGEDNKP 271

Query: 310 HYV-QMGSYGIGAMRVVAAVI 329
           H    +     G++    A++
Sbjct: 272 HRPVMIHRAIYGSVERFMAIL 292


>gi|145544571|ref|XP_001457970.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425789|emb|CAK90573.1| unnamed protein product [Paramecium tetraurelia]
          Length = 702

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 142/427 (33%), Gaps = 70/427 (16%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           +  MI  +   G Y   P      + +     +            P   SA  L  E   
Sbjct: 226 KAEMIEYYDVSGCYILRPWSYFIWEQIQRYFDDLIRTEDVENTYFPMFLSAQQLNKEKEH 285

Query: 86  YDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +    +  +       PT E +M   F   ++S+R+LP    Q     R 
Sbjct: 286 VEGFKAEVAWVTKYGESDLNEHLAIRPTSETIMYPAFAKWVQSHRDLPLKVNQWTNIVRW 345

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +R+REFL ++           + +  +++          G            
Sbjct: 346 EFKYPTPFIRTREFLWQE---GHTAHFTKEEAVKQVYTILNFYEQVYG------------ 390

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                                            E      I  + +  E++      T  
Sbjct: 391 ---------------------------------ELLAVPVIKGIKTESEKFAGGDFTT-- 415

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                +   +P+N     RG++     + G  +S      F+    +  +    S+G+  
Sbjct: 416 ----TVETIIPQNG----RGLQGATSHHLGQNFSKMFEIKFEDDKRQKAFAWQTSWGL-T 466

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCD 378
            R + A+I    D KG++ P  VA ++I +I I   D   +   + CE+I   L K    
Sbjct: 467 TRSIGAMIMFHGDDKGLVLPPRVAKYQIVIIPIINKDLDEKQLNEKCEEIKQILIKQRLR 526

Query: 379 VFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V +D+      G +F   +  G P+++ +G     +++V +  R    +  + +E++ N 
Sbjct: 527 VHFDNRDNYSPGWKFNKWEQKGVPIRLEIGPGEFKNNEVRVVQRFDNKKYQIKIEDL-NQ 585

Query: 438 ASHRFSN 444
            +    N
Sbjct: 586 LNQILDN 592


>gi|124486203|ref|YP_001030819.1| prolyl-tRNA synthetase [Methanocorpusculum labreanum Z]
 gi|152112928|sp|A2ST96|SYP_METLZ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|124363744|gb|ABN07552.1| prolyl-tRNA synthetase [Methanocorpusculum labreanum Z]
          Length = 477

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 151/420 (35%), Gaps = 69/420 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG+Y W P G    ++   ++R   NR    E   P L    +   E+     + 
Sbjct: 30  VRYPVKGLYVWYPFGFALRNHTYTLLRSLLNR-DHEETLFPLLIPETEFMKEAEHIKGFE 88

Query: 91  KEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            E+  +        D  +   PT E  +  ++   ++S+ +LP   YQ+   FR E +  
Sbjct: 89  DEVYWVTHGGLSPLDVKLALRPTSETAIYPMYALWVRSHADLPLKLYQVVNTFRYETKHT 148

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
             ++R RE                                                    
Sbjct: 149 RPLIRLREITSF----------------------------------------------ME 162

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           SH      D    QV       +  + +E      +  + S    W     A   +  + 
Sbjct: 163 SHTVHTDWDDANKQVEY-----ELGLATEFYRDLGVPIIISRRPDWDKFPGADFTMAIDA 217

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           +    P+      R +++G + + G  +S   + T++  +G+        +GI + R +A
Sbjct: 218 VM---PDG-----RTLQIGTVHHLGDHFSTTYNITYEDVNGEQKLASQTCFGI-SERCIA 268

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           A+I    D KG++ P +VAP ++ +I I           A EK+ + L   G  V  D  
Sbjct: 269 AIIAVHGDDKGLVLPATVAPTQVVIIPIIVGKRGDEIMAAVEKLESELKAAGLRVKTDAR 328

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G+++   +L G PL+V +G + + ++++   +RL G++  +  E   +        
Sbjct: 329 DMRPGAKYYHWELHGVPLRVELGPRDLDNNQLVCANRL-GVKTTIPRENAADSVKRLLDE 387


>gi|290981498|ref|XP_002673467.1| predicted protein [Naegleria gruberi]
 gi|284087051|gb|EFC40723.1| predicted protein [Naegleria gruberi]
          Length = 670

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/431 (16%), Positives = 145/431 (33%), Gaps = 36/431 (8%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D +       L     H H+ G+ S LP G++  ++V + +RE   R G  E+  P + +
Sbjct: 275 DHKKVGKDQEL--WFFHPHAPGMVSLLPHGKRICNSVQSQLREAYWRYGFAEVQSPIVLN 332

Query: 77  ADLWV-ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
            DLW  +SG  + + ++     + + +  I  P ++ +   ++R+  +SYR+LP  + + 
Sbjct: 333 KDLWYYQSGSRNQWWQQYNFALEIDKEYYILKPYNKPIHCIMYRNKSRSYRDLPIRYVEF 392

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              F D ++P     R R F   ++  F  + +  K          L     +G      
Sbjct: 393 GSVFPDNIKPFRLNGRLRSFQKDESTIFCQSDQTKKE--------VLNCLQMMGSVYN-- 442

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                        EF ++  T     +              T    +       E     
Sbjct: 443 ---------KFGFEFKIVFSTKPVSFYGDNLEWIKLEGILETALKSLGHEWERDEGGAPS 493

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                + +   + D+L          I +  I           + T+  +D       + 
Sbjct: 494 LGPRIEFY---VSDNLKRF-------IYLCGIIQMDLMTPRFFNLTYTSSDNSAESKPIC 543

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
                        +  S +  G  WP  ++P +  +I I    + C +    +  R+ + 
Sbjct: 544 ISSTILN-NTETFMALSAERYGGKWPFWLSPRQAIIIPIC---EKCSEYANNVKDRIHQA 599

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  D     I  +   A L  +   +I+G   +    V ++ R        S++E++
Sbjct: 600 GYYVDVDMSFHTIEKKIRNAHLAQYNYILIIGVSEMETDCVNVRIRDGEQEGVKSIQELL 659

Query: 436 NYASHRFSNNR 446
                +    +
Sbjct: 660 EEFEVKIREFK 670


>gi|317127978|ref|YP_004094260.1| prolyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315472926|gb|ADU29529.1| prolyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 478

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/410 (15%), Positives = 134/410 (32%), Gaps = 60/410 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G  ++ P G +  +++   +      TG      P L     +  E    + +  E+  +
Sbjct: 29  GCIAFKPDGYELWEHIKEEMDSRFKETGHRNAYFPMLIPETFFQKEKDHIEGFSPELPWV 88

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            +                                           E       +R     
Sbjct: 89  TEAAG----------------------------------------EKLEERLALRPTSET 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           M                Y+K   SY  +   +   +   R E   +    + EF+     
Sbjct: 109 MIGHL------------YSKWIKSYRDLPVLINQWANVFRWEKKTLPFIRTSEFL--WQE 154

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     +D     +   N   + +  L   +  +      +          S+ E   
Sbjct: 155 GHTAHVDEEDARKETMQMLNIYKEVVEGL-LAIPVYDGEKTPSERFAGAVDTYSI-EAMM 212

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   Y GTK++      +   + K   V   S+G  + R++ +VI    D +
Sbjct: 213 KDGKAVQAGTSHYLGTKFAEAFDIKYLTRENKHENVHTTSWGT-STRLIGSVIMVHGDEQ 271

Query: 337 GIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           G++ P  +AP ++ LI +     +    D  ++I+  L   G  V  DD  +  G +F  
Sbjct: 272 GLVLPPRIAPTQVVLIPVGPWKKNPAIIDKLDEIFVALKVKGIRVRLDDSDQSPGYKFNE 331

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +L G P+++ +G + +  ++V +K R    +  +SL+ V+       + 
Sbjct: 332 WELKGVPVRIELGPRDLEGNQVMMKARDEREKLVVSLDTVVESIEKELNT 381


>gi|291535587|emb|CBL08699.1| prolyl-tRNA synthetase, family I [Roseburia intestinalis M50/1]
          Length = 479

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 138/412 (33%), Gaps = 69/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMILRPAGYAIWENIQNELDRRFKETGVENVYLPLFIPESLLEKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                ++  + +   PT E +  D +++ I+SYR+LP  + Q     R E   R      
Sbjct: 99  TYGGLNQLPERLCVRPTSETLFCDFYKNIIQSYRDLPKVYNQWCSVVRWEKETRPF---- 154

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
                                                         S        H    
Sbjct: 155 --------------------------------------------LRSREFLWQEGHTAHA 170

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+  E +       +      E      +    +  E++    A  +            
Sbjct: 171 TAEEAEQRTV-QMLNVYADFCEEVLAMPVVRGQKTEKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG  ++      +   D K  YV   S+G+   R++ A+I   
Sbjct: 219 EALMHDGKALQSGTSHNFGNGFAKAFGIQYTDKDNKLQYVYQTSWGM-TTRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP +  +I I+       D  +++  R+ KV C    DD  +  G +F
Sbjct: 278 GDDSGLVLPPRIAPVQAMVIPIQQQKDGVLDTAKEVCERIGKV-CRAKLDDSDKSPGWKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRFS 443
           +  ++ G P+++ +G K ++  K V ++ R T  + +++L+E+         
Sbjct: 337 SEQEMRGIPVRIELGPKDIAAGKCVAVR-RDTREKIEIALDELEAKLPELLE 387


>gi|194389892|dbj|BAG60462.1| unnamed protein product [Homo sapiens]
          Length = 476

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/424 (15%), Positives = 121/424 (28%), Gaps = 76/424 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +      E  + G      P   S   L  E      +  E+  
Sbjct: 8   SGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAW 67

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 68  VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR 127

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ +S   T E +     ++   Y +++                          
Sbjct: 128 TREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYE------------------------- 162

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      +    +  E++    Y  T +         
Sbjct: 163 -----------------------ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISA---- 195

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                  S R I+ G   + G  +S      F+                G   R +  + 
Sbjct: 196 -------SGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMT 248

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWD 382
               D  G++ P  VA  ++ +I             +     C     RL  V   V  D
Sbjct: 249 MVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRAD 308

Query: 383 DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASH 440
                    +F   +L G P+++ VG + +     V ++ R TG +  ++  E       
Sbjct: 309 LRDNYSPDWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVAENEAETKLQA 367

Query: 441 RFSN 444
              +
Sbjct: 368 ILED 371


>gi|333030425|ref|ZP_08458486.1| Prolyl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
 gi|332741022|gb|EGJ71504.1| Prolyl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
          Length = 493

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/430 (14%), Positives = 148/430 (34%), Gaps = 49/430 (11%)

Query: 24  KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  
Sbjct: 21  ELVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSR 80

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+   + + KE   +                          +       +   +  + + 
Sbjct: 81  EADHVEGFAKECAVVTH-----------------------YRLKNAEDGSGVVVDPEAKL 117

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E               ++      +     ++Y     SY  +       +   R E   
Sbjct: 118 E---------------EELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRT 162

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                + EF+     G T     ++  +  +   N  + +       V          S+
Sbjct: 163 RLFLRTAEFL--WQEGHTAHETREEAEEETVKMLNV-YSEFAEKYMAVP-VVKGVKTASE 218

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                L     E      + ++ G   + G  ++      F   + +  YV   S+G+ +
Sbjct: 219 RFAGALDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVKFVNRENQLEYVWATSWGV-S 277

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK---IYARLSKVGCD 378
            R++ A+I +  D  G++ P ++AP ++ ++ I   ++      E+   I  +L  +G  
Sbjct: 278 TRLMGALIMTHSDDNGLVLPPALAPIQVVIVPIFKGEEQLAKIDERVNPIINKLKGMGVS 337

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V +D+   ++ G +FA  +L G P+++++G++ + +  +E+  R T  +   S+E +  Y
Sbjct: 338 VKYDNADNKRPGFKFADYELKGVPVRLVLGARDLENGTIEVMRRDTLEKTTHSIEGIEEY 397

Query: 438 ASHRFSNNRP 447
                   + 
Sbjct: 398 VKDLLDEMQQ 407


>gi|260949659|ref|XP_002619126.1| hypothetical protein CLUG_00285 [Clavispora lusitaniae ATCC 42720]
 gi|238846698|gb|EEQ36162.1| hypothetical protein CLUG_00285 [Clavispora lusitaniae ATCC 42720]
          Length = 565

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 75/209 (35%), Positives = 116/209 (55%), Gaps = 2/209 (0%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
            I +H+L+ R   +     G+  W+P+G   L+ +  ++ +     GA E+S+  L  +D
Sbjct: 30  RIPTHELLARLQYVSPPKPGLVHWMPMGMLVLNKMKQLVHKHMQDAGAEEISLSALSHSD 89

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           LW ++GR+     E+ RL D         PT EE +T + + ++ SY+NLP  FYQI  K
Sbjct: 90  LWKQTGRWGG--AELFRLKDSKGAEYCLAPTCEEEVTHLVQQNVASYKNLPLLFYQINTK 147

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           FRDE RPR G++R REF+MKDAYSFD++   +  +Y  M  +Y  +F  L    +   A+
Sbjct: 148 FRDEKRPRSGLLRGREFVMKDAYSFDVSEAEAMRAYETMSRAYAGVFAALRAPCVRADAD 207

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +G IGG +SHE+  +   GE  +F   D 
Sbjct: 208 TGEIGGSMSHEWHYVHAAGEDTLFECTDC 236



 Score = 80.2 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 87/192 (45%), Gaps = 22/192 (11%)

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK----GADGKDHYVQ 313
              +    +L          S+R IEV H FY G +Y+  +  T +            V 
Sbjct: 359 PLVEAEEGELCAHCDSGTLRSSRAIEVAHTFYLGDRYTRALDCTVEVPGADGTVSRQPVL 418

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG YGIG  R++AA+ E + D  G+ WP ++AP+ ++++     D   ++   ++   L 
Sbjct: 419 MGCYGIGISRIIAALAEINRDSHGLRWPAAIAPWHVTVV-----DAGAQEQAHEVARSLG 473

Query: 374 KVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSK--FVSDSKVEIKHRLTG-----I 425
            +  +V  D     ++G +   +  +G PL ++VG +   V    +E++ R  G     +
Sbjct: 474 DM--EVRLDARPSVRLGRKIRESHAMGIPLVLVVGKRYPTVE---IEVRGRQHGRSWETV 528

Query: 426 REDMSLEEVINY 437
           R++ S + ++  
Sbjct: 529 RQESSFDWIVET 540


>gi|253565674|ref|ZP_04843129.1| prolyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|251945953|gb|EES86360.1| prolyl-tRNA synthetase [Bacteroides sp. 3_2_5]
          Length = 497

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 147/426 (34%), Gaps = 49/426 (11%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +   + + KE   +                          +       +   +    + E
Sbjct: 82  AEHVEGFAKECAVVTH-----------------------YRLKNAEDGSGVVVDPAAKLE 118

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                          ++      +     ++Y     SY  +       +   R E    
Sbjct: 119 ---------------EELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+     G T     ++  +  I   N    +       V       +A    
Sbjct: 164 LFLRTAEFL--WQEGHTAHATREEAEEEAIRMLNVYA-EFAEKYMAVPVVKGVKSANERF 220

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L     E      + ++ G   + G  ++      F   + K  YV   S+G+ + 
Sbjct: 221 AG-ALDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I  +D+         E I A+L ++G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKLIDAKVEGIVAKLKQLGISV 338

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E ++ + +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCDGIETYV 398

Query: 439 SHRFSN 444
            +    
Sbjct: 399 QNLLEE 404


>gi|258647248|ref|ZP_05734717.1| proline--tRNA ligase [Prevotella tannerae ATCC 51259]
 gi|260852895|gb|EEX72764.1| proline--tRNA ligase [Prevotella tannerae ATCC 51259]
          Length = 494

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/421 (13%), Positives = 129/421 (30%), Gaps = 56/421 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +       G   +  P L     L  E+   + + KE   +
Sbjct: 36  GCMVIKPYGYAIWERIQQSMDARFKDVGVQNVYFPLLIPKSFLSKEAEHVEGFAKECAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +   N   T   +  + + +            F 
Sbjct: 96  TH-----------------------YRLKTNAEKTGVVVDPEAKLDEELIIRPTSETMFW 132

Query: 157 MKDAYSFD---LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
                        P       N M             + +     +              
Sbjct: 133 NTYRKWIHSWRDLPVICNQWCNVMRWEMRTRLFLRTSEFLWQEGHT------------AH 180

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDF-DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           A   E      +    +    EN      +  + S  E++              +     
Sbjct: 181 ATREEADQRARQMLDVYADCVENVMAVPVVRGMKSATERFAG-----------AVQTYTI 229

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   + G  ++      +   D +  Y    S+G+ + R++ A+I + 
Sbjct: 230 EAMMQDGKALQNGTSHFLGQNFAKAFGVQYVDKDNQLQYPWATSFGV-STRMMGALIMTH 288

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVC---RDACEKIYARLSKVGCDVFWDDM-GEQI 388
            D  G++ P  +AP ++ ++ I  +++      +  E I + L   G  V +D+   ++ 
Sbjct: 289 SDDNGLVLPPHLAPIQVVIVPIYKNNEELQKLDERLEAIASTLRGKGIRVKYDNADNKRP 348

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           G +FA  +L G P+++++G + + +  +E+  R T  +E + +E +  Y        +  
Sbjct: 349 GFKFADYELKGVPVRLVMGGRDLQNGTIELMRRDTLEKETLQVEGIEEYVEKLLEEIQQH 408

Query: 449 L 449
           +
Sbjct: 409 M 409


>gi|212550458|ref|YP_002308775.1| prolyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|259511574|sp|B6YQ92|SYP_AZOPC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|212548696|dbj|BAG83364.1| prolyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 493

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/415 (14%), Positives = 145/415 (34%), Gaps = 48/415 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   + E    TG +    P       L  E+   + + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKIQRQLDEMFKETGHVNAYFPLFIPKSFLNREASHIEGFAKECAIV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                    + +++   +  ++ S   L
Sbjct: 96  THY--------------------------------------RLKNDPIGKGIIVDSEAKL 117

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            ++      +     ++Y K   SY  +   +   +  +R E        + EF+     
Sbjct: 118 EEELIIRPTSESIIWNTYKKWIHSYRDLPILINQWANVVRWEMRTRLFLRTAEFL--WQE 175

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ ++  +   +   + +     +    T       +           E   
Sbjct: 176 GHTAHTSKEEAIEETLKILDIYANFV--EQYMAIPVTKGVKTPCERFAGATDTYCIETLM 233

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++      F    GK  YV   S+G+ + R++ A+I    D  
Sbjct: 234 QDGKALQAGTSHFLGQNFAKAFDVQFLNKKGKREYVWATSWGV-STRLMGALIMMHSDDN 292

Query: 337 GIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP +I +I +       +   +    I      +  +V +D+   ++ G +F
Sbjct: 293 GLVLPPKLAPCQIVIIPVSKDRTSLEDINEKATNIINDFKNLDINVKYDNTDNKKPGWKF 352

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           A  +L G P+++ +G++ + +  +E+  R T  +E +S+  + +YA++  ++ + 
Sbjct: 353 AEYELKGIPIRLTLGTRDLENGTIEVSRRDTLTKETISINNITDYANNLLNDIQQ 407


>gi|189461379|ref|ZP_03010164.1| hypothetical protein BACCOP_02034 [Bacteroides coprocola DSM 17136]
 gi|189431908|gb|EDV00893.1| hypothetical protein BACCOP_02034 [Bacteroides coprocola DSM 17136]
          Length = 496

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 141/415 (33%), Gaps = 48/415 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +  I+ +    TG +    P L     L  E+   + + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQRILDDMFKATGHVNAYFPLLIPKSYLSREAEHVEGFAKECAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +       +   +    + E              
Sbjct: 96  TH-----------------------YRLKNAEDGSGVIVDPAAKLE-------------- 118

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            ++      +      +Y     SY  +       +  MR E        + EF+     
Sbjct: 119 -EELIIRPTSETIIWSTYKNWINSYRDLPILCNQWANVMRWEMRTRLFLRTAEFL--WQE 175

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++         +  + D       V       +A        L     E   
Sbjct: 176 GHTAHATREEAEAEAQKMLHV-YGDFAEKYMAVPVIKGVKSANERFAG-ALDTYTIEGLM 233

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++   +  F   + K  YV   S+G+ + R++ A+I +  D  
Sbjct: 234 QDGKALQCGTSHFLGQNFAKAFNVQFVDKNNKLDYVWATSWGV-STRLMGALIMTHSDDN 292

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ ++ I  +D+  +      E I  +L ++G  V +D+   ++ G +F
Sbjct: 293 GLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVTKLREMGISVKYDNADNKRPGFKF 352

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           A  +L G P+++++G + + ++ +EI  R T  +E  S + +  Y  +     + 
Sbjct: 353 ADYELKGVPVRLVMGGRDLENNTMEIMRRDTLEKETRSCDGIEEYVKNLLEEIQE 407


>gi|260062022|ref|YP_003195102.1| prolyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
 gi|88783584|gb|EAR14755.1| prolyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
          Length = 491

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 59/410 (14%), Positives = 126/410 (30%), Gaps = 48/410 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A + +    TG      P       L  E+   + + KE   +
Sbjct: 33  GCMVIKPYGYAIWEKMQAALDKMFKDTGHQNAYFPIFIPKSYLSKEASHVEGFAKECAVV 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +       +   +  + R E              
Sbjct: 93  TH-----------------------YRLKNAEDGSGIVVDPEARLEEELIVRPTS----- 124

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                           +Y +   SY  +   +   +  +R E        + EF+     
Sbjct: 125 ----------ETIIWDTYRRWIQSYRDLPLLINQWANVVRWEMRTRLFLRTAEFLWQ--- 171

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E     + +           D     +   +            +     +     E   
Sbjct: 172 -EGHTAHATEAEAIAEAETILDVYATFAEEHMAVPVIKGTKTAGERFAGAVETYCIEALM 230

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++      F   +G+  YV   S+G+ + R++ A+I +  D  
Sbjct: 231 QDGKALQAGTSHFLGQNFAKAFDVKFDNTEGQQEYVWATSWGV-STRLMGALIMTHSDDN 289

Query: 337 GIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQF 392
           G++ P  +AP ++ ++ I    +           + ARL   G  V +DD    + G +F
Sbjct: 290 GLVLPPKLAPIQVVIVPIYRGQEQLEAISAVVNPLAARLRDRGISVKYDDRDTHKPGFKF 349

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              +L G P+++ VG + +++   E+  R T  ++ +  E +  Y  +  
Sbjct: 350 NEYELKGVPVRLGVGPRDLANGTFEVARRDTLEKQVVPAEGIEEYIGNLL 399


>gi|114152886|sp|O28664|SYP_ARCFU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 471

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 83/429 (19%), Positives = 156/429 (36%), Gaps = 80/429 (18%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG+Y W P G K    V + +RE  +R    E+  P L    +L  E      + 
Sbjct: 25  VRYPVKGLYVWFPFGFKIRQLVYSKLREIMDRE-HDEVYFPALIPETELGKEGEHIKGFE 83

Query: 91  KEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            E+  +        D  +   PT E  M  +FR  ++++ +LP   YQI   FR E +  
Sbjct: 84  DEVYWITHGGLTPLDVKLALRPTSETAMYPMFRLWVRNHADLPLKVYQIVNTFRYETKHT 143

Query: 147 FGVMRSREFL-MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             ++R RE    K+A++     E +     K    Y                        
Sbjct: 144 RPLIRLREITSFKEAHTVHKDFEEAAEHVKKAIGFY-----------------------K 180

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             ++F+                              I  +     +W     A   +  +
Sbjct: 181 EFYDFLA-----------------------------IPYMVIRRPEWDKFPGAAYTIAFD 211

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            +    P+      R +++G + +    ++      ++  +G+ +Y     YGI + R +
Sbjct: 212 TIM---PDG-----RTLQIGTVHHLADNFARTFDIKYEAPNGEHYYAHQTCYGI-SERCI 262

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           AA+I    D  G++ P  VAP +I +I I  K  ++   +AC K+  +L      V  D+
Sbjct: 263 AALISVHGDDLGLVLPFEVAPVQIVIIPILYKGKEEAVMEACRKLAEKLKA--FRVVLDE 320

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN------- 436
             ++ G+++   +L G P++  +G +        +  R    + ++ L+EV         
Sbjct: 321 GEDRPGAKYYKWELKGVPIRFEIGPRDAEKGVAVVSFRDEKRKFEVPLDEVDEGKVLEWA 380

Query: 437 -YASHRFSN 444
                R  N
Sbjct: 381 RELKQRLRN 389


>gi|312131710|ref|YP_003999050.1| prolyl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
 gi|311908256|gb|ADQ18697.1| prolyl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
          Length = 490

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/466 (16%), Positives = 168/466 (36%), Gaps = 89/466 (19%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQ 61
            SK  LP  +EN  +     ++L+ R  +    +  G     P G    + +   + +  
Sbjct: 1   MSKA-LPTREENYSEWY---NELVKRANLAENSAVRGCMVIKPYGYAIWEKMQRALDDMF 56

Query: 62  NRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD------------------RNDK 102
             TG      P       L  E+   + + KE   +                    + ++
Sbjct: 57  KETGHTNAYFPLFIPKSFLSKEASHVEGFAKECAVVTHYRLKNDPDGKGVVVDPEAKLEE 116

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +I  PT E V+ + +++ ++S+R+LP    Q     R E+R R  + R+ EFL ++   
Sbjct: 117 ELIVRPTSETVIWNSYKNWVQSHRDLPILINQWANVVRWEMRTRLFL-RTAEFLWQE--- 172

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
                   + +  +                                           +V+
Sbjct: 173 GHTAHATREEAVAETNQML--------------------------------------EVY 194

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                    +P        +    +  E++                    E      + +
Sbjct: 195 AKFAEEWMAVPV-------VRGRKTANERFAG-----------ADDTLCIEALMQDGKAL 236

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           + G   + G  ++      F+   GK  +V   S+G+ + R++ A+I +  D  G++ P 
Sbjct: 237 QAGTSHFLGQNFAKAFDVKFQDKTGKQEFVWGTSWGV-STRLMGALIMAHSDDLGLVLPP 295

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMG-EQIGSQFAVADLL 398
            +AP ++ ++ I   ++      E++      L   G  V +DD    + G +FA  +L 
Sbjct: 296 KLAPIQVVIVPIYKGEEQLNAIFERMEPTIKSLKVQGISVKFDDDDSARPGWKFAEYELK 355

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G P+++ VG++ + + +VE+  R T  +E +S++ +  Y  +  ++
Sbjct: 356 GVPVRIAVGARDLENHQVEVARRDTLSKESVSMDGLDQYLINLLND 401


>gi|260831390|ref|XP_002610642.1| hypothetical protein BRAFLDRAFT_117885 [Branchiostoma floridae]
 gi|229296009|gb|EEN66652.1| hypothetical protein BRAFLDRAFT_117885 [Branchiostoma floridae]
          Length = 1596

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/423 (14%), Positives = 114/423 (26%), Gaps = 74/423 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y   P+     + +      E  + G   +  P   S   L  E      +  E+  
Sbjct: 1126 SGCYILRPMSYSIWEKIKDFFDAEIKKMGVDNVYFPIFVSQSALEREKTHIADFAPEVAW 1185

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    D  +       PT E VM   +   IKS+R+LP  + Q     R E         
Sbjct: 1186 VTKSGDTDLAEPIAIRPTSETVMYPAYAKWIKSHRDLPIKYNQWNNVVRWE--------- 1236

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                                                   K       +        H   
Sbjct: 1237 --------------------------------------FKHPQPFLRTREFLWQEGHSAF 1258

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               D  + +V    +                       +     Y  T +V+        
Sbjct: 1259 ASKDEADEEVMAILELYARVYEDLMAIPVIRGRKTEKEKFAGGDYTTTVEVYISA----- 1313

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIE 330
                  S R I+     + G  +S      ++  +       +     G   R +  ++ 
Sbjct: 1314 ------SGRAIQGATSHHLGQNFSKMFEIVYEDPEKPGEKKFVYQNSWGITTRTIGVMVM 1367

Query: 331  SSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDD 383
               D KG++ P  VA  ++ +I             Q     C++    L   G     D 
Sbjct: 1368 VHGDNKGLVVPPVVARDQVVVIPCGVTASLPEEDKQKLMKKCQEYRQALRDAGIRATDDL 1427

Query: 384  MGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHR 441
                  G +F   +L G P+++ VG + +  ++ V ++ R TG +  ++  +        
Sbjct: 1428 RDNYSPGWKFNHWELKGTPIRMEVGPRDMKQNQFVAVR-RDTGEKMTLAEGKAAEKIKEI 1486

Query: 442  FSN 444
               
Sbjct: 1487 LDT 1489


>gi|315608143|ref|ZP_07883135.1| proline--tRNA ligase [Prevotella buccae ATCC 33574]
 gi|315250112|gb|EFU30109.1| proline--tRNA ligase [Prevotella buccae ATCC 33574]
          Length = 493

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 77/430 (17%), Positives = 145/430 (33%), Gaps = 84/430 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   + +    TGA     P L     L  E+     + KE   +
Sbjct: 36  GCMIIKPYGFAIWEKMKEQLDKMFKETGAQNAYFPLLIPKSFLSREAEHVKGFAKECAVV 95

Query: 97  AD------------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                               R D+ ++  PT E ++ + +++ I S+R+LP    Q    
Sbjct: 96  THYRLKSSEDGCSVEVDPAARLDEELVIRPTSETIIWNTYKNWIHSWRDLPIMCNQWCNV 155

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R                                 +      +LR    L  +     A 
Sbjct: 156 MR---------------------------------WEMRTRPFLRTSEFLWQEGHTAHAT 182

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                 +      V A   E             +P           +   V+  T  +A 
Sbjct: 183 REEAEEEAKKMLHVYAKFAE---------EWMAVP-----------VVQGVKSETERFAG 222

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
             D +         E      + ++ G   + G  ++     T+   D K  YV   S+G
Sbjct: 223 ALDTYT-------IEAMMQDGKALQSGTSHFLGQNFAKSFDVTYLNKDNKPEYVWATSWG 275

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKV 375
           + + R++ A+I    D  G++ P  +AP ++ +I I       +    K+     RL  +
Sbjct: 276 V-STRLMGALIMVHSDDNGLVLPPKLAPIQVVIIPITKGADQLQAINAKLQPVIDRLRDM 334

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V +DD   ++ G +FA  +L G P+++++G + + D+ +EI  R T  +E +S + +
Sbjct: 335 GISVKYDDADNKRPGFKFADYELKGVPVRLVMGGRDLEDNTIEIMRRDTLEKESVSFDGI 394

Query: 435 INYASHRFSN 444
                    +
Sbjct: 395 AERVEGLLED 404


>gi|260170261|ref|ZP_05756673.1| prolyl-tRNA synthetase [Bacteroides sp. D2]
 gi|315918623|ref|ZP_07914863.1| prolyl-tRNA synthetase [Bacteroides sp. D2]
 gi|313692498|gb|EFS29333.1| prolyl-tRNA synthetase [Bacteroides sp. D2]
          Length = 497

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 148/426 (34%), Gaps = 49/426 (11%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +   + + KE   +                          +       +   +    + E
Sbjct: 82  AEHVEGFAKECAVVTH-----------------------YRLKNAEDGSGVVVDPAAKLE 118

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                          ++      +     ++Y     SY  +       +   R E    
Sbjct: 119 ---------------EELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+     G T     ++  +  I   N  + +       V       +A    
Sbjct: 164 LFLRTAEFL--WQEGHTAHATREEAEEEAIRMLNV-YGEFAEKYMAVPVVKGVKSANERF 220

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L     E      + ++ G   + G  ++      F   + K  YV   S+G+ + 
Sbjct: 221 AG-ALDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +      E I A+L  +G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISV 338

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E ++ E +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCEGIETYV 398

Query: 439 SHRFSN 444
            +    
Sbjct: 399 QNLLEE 404


>gi|225011920|ref|ZP_03702358.1| prolyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
 gi|225004423|gb|EEG42395.1| prolyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
          Length = 492

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/410 (16%), Positives = 140/410 (34%), Gaps = 45/410 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G     P G    + + A    E ++               ++  +G  ++Y    +  +
Sbjct: 33  GCMVIKPYGYAIWEKMQA----ELDK---------------MFKATGHENAYFPLFVPKS 73

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        +E              N          K  +EL  R           
Sbjct: 74  LFEAEEKNAEGFAKECAVVTHYRLKNDENNPGKLIVDPNAKLEEELVVRP---------- 123

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                   +     ++Y     SY  +   +   +  +R E        + EF+     G
Sbjct: 124 -------TSEAVIWNTYKTWIQSYRDLPILINQWANVVRWEMRTRLFLRTAEFL--WQEG 174

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            T      + M       N  + D +     +          S+           E    
Sbjct: 175 HTAHATKAEAM-TEAKLMNQVYADFVENYMAIPVIQG-VKTESERFAGAEETFCIEALMQ 232

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + ++ G   + G  ++      +  A+G   YV   S+G+ + R++ A+I +  D  G
Sbjct: 233 DGKALQAGTSHFLGQNFAKAFDVKYATAEGGLEYVWATSWGV-STRLIGALIMTHSDDNG 291

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDAC---EKIYARLSKVGCDVFWDDMGE-QIGSQFA 393
           ++ P ++AP ++ +I I   ++         EKI   L +    V +D+  + + G +F 
Sbjct: 292 LVLPPNLAPTQVVIIPIYRGEEEQNKVAATAEKIKVALEEQNIRVKFDNRDKFKPGYKFN 351

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             +L G PL++ +G K + +  VEI  R    +E +S +E+++Y S + +
Sbjct: 352 DYELKGVPLRIAIGPKDLQNGTVEIARRDNLTKEVVSQDEIVDYISSQLA 401


>gi|240103065|ref|YP_002959374.1| threonyl-tRNA synthetase [Thermococcus gammatolerans EJ3]
 gi|259516771|sp|C5A5J8|SYT_THEGJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239910619|gb|ACS33510.1| Threonyl-tRNA synthetase (thrS) [Thermococcus gammatolerans EJ3]
          Length = 626

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 141/429 (32%), Gaps = 46/429 (10%)

Query: 24  KLMLRTGMIHQH---SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-- 78
           +LML   ++        G   + P G+     +   + E+    GA+E+  P +   +  
Sbjct: 210 RLMLEHELVDYEPGSDAGNLRYYPKGRLIKGLLEQYVTEKVVEYGAMEVETPIMYDFEHP 269

Query: 79  -LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ-IQ 136
            L     R+ +       +    DK              I +  I SYRNLP   Y+  +
Sbjct: 270 ALEKYLNRFPARQ----YIVKSGDKKFFLRFAACFGQFLIKKDAIISYRNLPLRMYELTR 325

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E      G+ R R F M D ++     + +   + K +   + +   +GL     
Sbjct: 326 YSFRREKSGELSGLRRLRAFTMPDMHTVAKDLKQAMDEFKKQYKLSMEVLRGVGLTP--- 382

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
             +   +    +H+F                           +   II    ++E W   
Sbjct: 383 --DDYEVAIRFTHDFW------------------EANKDFIVELAKIIGKPVLIEMWDQR 422

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           +            D+L +   +S   I+V        + +     T+   +GK+ Y  + 
Sbjct: 423 FFYFILKFEFNFVDNLDKAAALSTVQIDV--------ENAERFGITYYDEEGKERYPLIL 474

Query: 316 SYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARL 372
                    RV+ A++E     +          +   +   +        D    +  +L
Sbjct: 475 HCSPSGAIERVMYAILEKQAKLQAQGKKPMFPLWLSPIQVRVIPVSDDVLDYALYVAGKL 534

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                 V  DD  +++  +   A+    P  ++VG      + V ++ R  G + +M LE
Sbjct: 535 EGAKIRVDVDDTNDRLNKKIRKAEKEWVPYIIVVGKNEKEQNTVTVRRREDGKQVEMQLE 594

Query: 433 EVINYASHR 441
           ++I     +
Sbjct: 595 DLIREIRQK 603


>gi|237716484|ref|ZP_04546965.1| prolyl-tRNA synthetase [Bacteroides sp. D1]
 gi|255691705|ref|ZP_05415380.1| proline--tRNA ligase [Bacteroides finegoldii DSM 17565]
 gi|262408082|ref|ZP_06084630.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|294809476|ref|ZP_06768179.1| proline--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|298484158|ref|ZP_07002324.1| proline--tRNA ligase [Bacteroides sp. D22]
 gi|299145587|ref|ZP_07038655.1| proline--tRNA ligase [Bacteroides sp. 3_1_23]
 gi|229444131|gb|EEO49922.1| prolyl-tRNA synthetase [Bacteroides sp. D1]
 gi|260622644|gb|EEX45515.1| proline--tRNA ligase [Bacteroides finegoldii DSM 17565]
 gi|262354890|gb|EEZ03982.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|294443294|gb|EFG12058.1| proline--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|295084169|emb|CBK65692.1| prolyl-tRNA synthetase [Bacteroides xylanisolvens XB1A]
 gi|298269662|gb|EFI11257.1| proline--tRNA ligase [Bacteroides sp. D22]
 gi|298516078|gb|EFI39959.1| proline--tRNA ligase [Bacteroides sp. 3_1_23]
          Length = 497

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 147/426 (34%), Gaps = 49/426 (11%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +   + + KE   +                          +       +   +    + E
Sbjct: 82  AEHVEGFAKECAVVTH-----------------------YRLKNAEDGSGVVVDPAAKLE 118

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                          ++      +     ++Y     SY  +       +   R E    
Sbjct: 119 ---------------EELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+     G T     ++  +  I   N  + +       V       +A    
Sbjct: 164 LFLRTAEFL--WQEGHTAHATREEAEEEAIRMLNV-YGEFAEKYMAVPVVKGVKSANERF 220

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L     E      + ++ G   + G  ++      F   + K  YV   S+G+ + 
Sbjct: 221 AG-ALDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I  +D+         E I A+L  +G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISV 338

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E ++ E +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCEGIETYV 398

Query: 439 SHRFSN 444
            +    
Sbjct: 399 QNLLEE 404


>gi|240282267|gb|EER45770.1| prolyl-tRNA synthetase [Ajellomyces capsulatus H143]
 gi|325088406|gb|EGC41716.1| prolyl-tRNA synthetase [Ajellomyces capsulatus H88]
          Length = 606

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/444 (15%), Positives = 137/444 (30%), Gaps = 81/444 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + +     +   + G    S P   S D L 
Sbjct: 108 QQVLLKGQMLDYYDVSGCFILKPHSYFIWETIQNWFNDRIKKMGVKNCSFPLFVSEDVLK 167

Query: 81  VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +      + ++ +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 168 KEKDHIEGFAAEVAWVTHAGNSKLERKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWN 227

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT  G+     ++   Y  ++           
Sbjct: 228 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTEGGAHEEVLQILEHYAHVY----------- 276

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAP 255
                                                 E      I    +  E++    
Sbjct: 277 -------------------------------------EELLAIPVIRGQKTEKEKFAGGL 299

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y  T + +              + RGI+ G     G  +S   S T +    K    +  
Sbjct: 300 YTTTVEGYIPA-----------TGRGIQGGTSHGLGQNFSKMFSITVEDPSAKPDEKKPA 348

Query: 316 SYGIGA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRD 363
            +          R +  ++    D +G++ P  VA  +  ++ +        A       
Sbjct: 349 LHVWQNSWGLSTRTIGIMVMVHGDDRGLVIPPRVADIQTVIVPVGTGAKTTDAEKASLMA 408

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL- 422
             + + A L   G  V  D      G +F   +L G PL++  G    +   V    R  
Sbjct: 409 EIDALAAVLEAAGVRVEVDKRDYTPGWKFNDWELHGVPLRLEFGPGESAGHYVTASRRDI 468

Query: 423 -TGI-REDMSLEEVINYASHRFSN 444
                +  + + E+          
Sbjct: 469 LGKDGKSTIPITELAAQVPALLET 492


>gi|206901980|ref|YP_002250545.1| prolyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
 gi|206741083|gb|ACI20141.1| prolyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
          Length = 480

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 149/421 (35%), Gaps = 71/421 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +N+  I+ E+   TG +    P       L  E+   + +  ++  +
Sbjct: 37  GCMVIKPYGYAIWENMQRILDEKIKATGHVNAYFPLFIPKSFLEKEAEHVEGFSPQVAWV 96

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E ++  ++   I+S+R+LP    Q     R E   R  + R+
Sbjct: 97  TKGGDEELFEPLAVRPTSEAIICSMYSKWIQSWRDLPVLINQWANVVRWEKETRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M   Y                               
Sbjct: 156 TEFLWQEGHTAHRTFEEAEEEALRMLNVYKDFVE-------------------------- 189

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                           D  IP        I    +  E++              L     
Sbjct: 190 ---------------NDLAIPV-------IAGRKTENEKFAG-----------ALHTYSI 216

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      R ++ G     G  ++      F+  DG+  YV   S+G+ + R++ A+I + 
Sbjct: 217 EVLLADGRALQAGTSHNLGQHFAKAFDIMFQDVDGERKYVWQTSWGV-STRLIGALIMTH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKA---HDQVCRDACEKIYARLSKVGCDVFWD-DMGEQI 388
            D  G++ P  VAP++I +I I           +  ++IY  L K    V  D D     
Sbjct: 276 GDDYGLVLPPRVAPYQIVIIPIWKSETDKTKVYNYVDEIYEVLRKY-FRVKVDKDEEHTP 334

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           G +F   +L G P++V +G K V   ++ +  R   I+  +  E ++    +   + +  
Sbjct: 335 GWKFNEWELKGVPVRVEIGPKEVEKQELYVARRDLRIKMSIKRENMVQDLENLLRDIQKT 394

Query: 449 L 449
           L
Sbjct: 395 L 395


>gi|149918430|ref|ZP_01906920.1| prolyl-tRNA synthetase [Plesiocystis pacifica SIR-1]
 gi|149820730|gb|EDM80140.1| prolyl-tRNA synthetase [Plesiocystis pacifica SIR-1]
          Length = 517

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/436 (16%), Positives = 144/436 (33%), Gaps = 84/436 (19%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKE 92
           +  KG     P G    + +   +      TG      P L     +  E+   + +  E
Sbjct: 51  KVVKGCMVIRPHGYAIWEKIQRDLDARFKNTGHRNAYFPLLVPQSFIMKEAEHIEGFAPE 110

Query: 93  MLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  +     +      +  PT E ++   F   I S+R+LP    Q     R ELR R  
Sbjct: 111 LAVVTHAGGQELEEPYVIRPTSETIIGHFFAKWIDSHRDLPLKINQWANVMRWELRTRM- 169

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            +R+ EFL ++ ++   T E +     +M                               
Sbjct: 170 FLRTTEFLWQEGHTAHATHEEAIEETLQML------------------------------ 199

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
              V  D  E                E         + +  E++              L 
Sbjct: 200 --HVYGDFAE----------------EVLAVPVTRGIKTASERFAG-----------ALE 230

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               E      + ++ G     G  +       F+   G   +V   S+G+ + R++  +
Sbjct: 231 TYCIEAWMQDGKALQAGTSHDLGQNFGKAFDVKFQNEAGDLEHVWQTSWGV-STRLIGGL 289

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSKVGC-------- 377
           + +  D  G++ P  VAP   ++I I       +   +A E++  +LS +          
Sbjct: 290 VMTHSDDDGLVLPPRVAPIHAAIIPIFRKAHEKERVMEAAERLKEQLSAIDIAPERARYR 349

Query: 378 ---DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMS 430
              +V  DD   + G++F   +  G P+++ +G K +   +V +K R+       ++ + 
Sbjct: 350 DFLEVVIDDRDMRPGAKFYDWERRGVPMRIELGPKDLDKGQVCMKMRVDTPACSGKQFLP 409

Query: 431 LEEVINYASHRFSNNR 446
             E +     R  + +
Sbjct: 410 EAEFLGSVRQRLLDYQ 425


>gi|297184115|gb|ADI20234.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 501

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/432 (14%), Positives = 138/432 (31%), Gaps = 49/432 (11%)

Query: 24  KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-V 81
           +L+++  +       G     P G    + + A +      TG +    P       +  
Sbjct: 28  ELVVKADLAQNSGVRGSMVIKPYGFAIWERIQADLDRRFKETGHMNAYFPLFIPKSYFSK 87

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+   D + KE   +                                             
Sbjct: 88  EASHVDGFAKECAVVTHYRLMD-------------------------------------- 109

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           +      V+     L ++      +      +Y     SY  +   +   +  +R E   
Sbjct: 110 DPNGGGVVVDPSAKLEEELIVRPTSETIIWDTYKDWIQSYRDLPILVNQWANVVRWEMRT 169

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                + EF+     G T     ++ +       +    D +     +           +
Sbjct: 170 RLFLRTAEFL--WQEGHTAHATKQEAITEAETMLDVYT-DFVQDVMAIPVLRG-LKTEGE 225

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                L     E      + ++ G   + G  ++      F+  +GK  YV   S+G+ +
Sbjct: 226 RFAGALETYCIEALMQDGKALQAGTSHFLGQNFAKAFEVKFQNKEGKQEYVWATSWGV-S 284

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCD 378
            R++ A+I +  D  G++ P  +AP+++ ++ I    +      +  E +  +L   G  
Sbjct: 285 TRLMGALIMTHSDDNGLVLPPKLAPYQVVIVPIYKGQEQLDAISEVAEDLMGQLRAQGIT 344

Query: 379 VFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V +D+    + G +F   +L G PL++ +G K +    VE+  R T  ++ +  +EV   
Sbjct: 345 VKYDNRDTHKPGWKFNQYELQGIPLRIAIGPKDLEKGSVELARRDTLTKQFVDQKEVSTK 404

Query: 438 ASHRFSNNRPVL 449
                   +  L
Sbjct: 405 VPELLDEIQRTL 416


>gi|205373971|ref|ZP_03226772.1| prolyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 476

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/410 (18%), Positives = 147/410 (35%), Gaps = 67/410 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G K  +++   +  +   TG   + +P      L   E    + +  E+  +
Sbjct: 37  GSMIIRPYGYKIWEHIKDQLDRKIKETGHENVYMPLFIPESLLQVEKDHIEGFAPEVAWV 96

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                ++  + +   PT E +  + +R+ I SYR+LP  + Q     R E   R  + R+
Sbjct: 97  THGGEEKLQERLCVRPTSEVLFAEHYRNIIHSYRDLPKLYNQWANVVRWEKTTRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++        E  + +  +                                    
Sbjct: 156 LEFLWQE---GHTCHETEQEAIEETEKMLNVYAT-------------------------- 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                              I  E      I    +  E++               F    
Sbjct: 187 -------------------ICEELLAIPVIRGRKTEKEKFAG-----------ATFTYTI 216

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++     + G +++   S TF   +G++ +VQ  S+G    R++ A+I   
Sbjct: 217 ESLMHDGKALQAATSHFLGDRFAEAFSITFLNREGREQHVQQTSWGF-TTRIIGAMIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D +G++ P +VAP ++ ++ I  H +   D    +  R+  V   V  D   +Q G +F
Sbjct: 276 GDNRGLVLPPNVAPTQVMIVPIAQHKEGVLDHAYGLKERVKTV-ARVDIDASDKQPGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             +++ G P+++ VG K +   +V +  R TG +  + + EV    +   
Sbjct: 335 NESEMKGIPIRLEVGPKDMEQDQVILVRRDTGEKVQVGISEVEQKITELL 384


>gi|53713725|ref|YP_099717.1| prolyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60681995|ref|YP_212139.1| prolyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|265764051|ref|ZP_06092619.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|81314941|sp|Q5LCF0|SYP_BACFN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|81382377|sp|Q64TJ6|SYP_BACFR RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|52216590|dbj|BAD49183.1| prolyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60493429|emb|CAH08215.1| prolyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|263256659|gb|EEZ28005.1| prolyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|301163433|emb|CBW22984.1| prolyl-tRNA synthetase [Bacteroides fragilis 638R]
          Length = 497

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 147/426 (34%), Gaps = 49/426 (11%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +   + + KE   +                          +       +   +    + E
Sbjct: 82  AEHVEGFAKECAVVTH-----------------------YRLKNAEDGSGVVVDPAAKLE 118

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                          ++      +     ++Y     SY  +       +   R E    
Sbjct: 119 ---------------EELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+     G T     ++  +  I   N    +       V       +A    
Sbjct: 164 LFLRTAEFL--WQEGHTAHATREEAEEEAIRMLNVYA-EFAEKYMAVPVVKGVKSANERF 220

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L     E      + ++ G   + G  ++      F   + K  YV   S+G+ + 
Sbjct: 221 AG-ALDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I  +D+         E I ARL ++G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKLIDAKVEGIVARLKQLGISV 338

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E ++ + +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCDGIETYV 398

Query: 439 SHRFSN 444
            +    
Sbjct: 399 QNLLEE 404


>gi|237720697|ref|ZP_04551178.1| prolyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|293373969|ref|ZP_06620310.1| proline--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|229449532|gb|EEO55323.1| prolyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|292631045|gb|EFF49682.1| proline--tRNA ligase [Bacteroides ovatus SD CMC 3f]
          Length = 497

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 147/426 (34%), Gaps = 49/426 (11%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +   + + KE   +                          +       +   +    + E
Sbjct: 82  AEHVEGFAKECAVVTH-----------------------YRLKNAEDGSGVVVDPAAKLE 118

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                          ++      +     ++Y     SY  +       +   R E    
Sbjct: 119 ---------------EELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+     G T     ++  +  I   N  + +       V       +A    
Sbjct: 164 LFLRTAEFL--WQEGHTAHATREEAEEEAIRMLNV-YGEFAEKYMAVPVVKGVKSANERF 220

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L     E      + ++ G   + G  ++      F   + K  YV   S+G+ + 
Sbjct: 221 AG-ALDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I  +D+         E I A+L  +G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISV 338

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E ++ E +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCEGIETYV 398

Query: 439 SHRFSN 444
            +    
Sbjct: 399 QNLLEE 404


>gi|84391304|ref|ZP_00991635.1| threonyl-tRNA synthetase [Vibrio splendidus 12B01]
 gi|84376593|gb|EAP93471.1| threonyl-tRNA synthetase [Vibrio splendidus 12B01]
          Length = 460

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 76/210 (36%), Gaps = 5/210 (2%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
            + + +   RD       L L    + Q + G+  W   G      +   IR++      
Sbjct: 234 LVRLEEAAKRDHRKIGKHLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFIRQKLTEYDY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y + M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYAEAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F  T +  +             +
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHVFC-TEDQVQQEVKACIEMVYDTY 409

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              G ++I ++  + P     S E    A+
Sbjct: 410 TTFGFENIVVKLSTRPEQRVGSDEMWDRAE 439


>gi|212542487|ref|XP_002151398.1| prolyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
 gi|210066305|gb|EEA20398.1| prolyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
          Length = 641

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 85/237 (35%), Positives = 130/237 (54%), Gaps = 5/237 (2%)

Query: 2   RRSKYFLPI--LQENPRDAEIASH-KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           R S ++LP   ++    + E      L++R G I Q   G++  LPLG +  + + A+I 
Sbjct: 42  RTSNFWLPTGGIERKAAETEKEDANDLLIRAGFIRQAYSGVFHMLPLGLRVQNKLEALID 101

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                 GA ++S+ +L S +LW ++GR    G E+ +  DR +   +  PTHEE +T + 
Sbjct: 102 THMQSLGASKVSLSSLSSQELWEKTGRL-KSGSEVFKFNDRKESRFLLAPTHEEEITSLV 160

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            S + SY+ LP   YQI  K+RDE RPR G++R REF+MKD Y+FD   E +  +Y    
Sbjct: 161 ASLVNSYKELPLRLYQISRKYRDEARPRQGLLRGREFVMKDLYTFDYNAEQALATYEATR 220

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
            +Y RIF  L +  +   A+SG +GG+LSHEF  ++D GE  +    D  D+    E
Sbjct: 221 EAYKRIFDTLKVPYLVAAADSGNMGGNLSHEFHFISDKGEDTLISCSDC-DYVYNEE 276



 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 96/195 (49%), Gaps = 21/195 (10%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK--------------GADGKDHY 311
           +      +    +   +E+GH FY GT+YS  + A                     ++  
Sbjct: 449 EKCPKCSKGFLHTHNAVELGHTFYLGTRYSEVLKAKVFVDSSATKSNESDSNSNKPQNVP 508

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           ++MG +GIG  R+++AV ++  D +G+ WP ++APF+I ++  +  +       E +Y  
Sbjct: 509 MEMGCHGIGVSRMISAVADACSDVRGLNWPRAIAPFEIIVVPARNLESE----AENVYDL 564

Query: 372 LSKVG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIRED 428
           L +     DV  DD  + +G +   AD++G+P+ V+VG  +    K+E+  R   G+RED
Sbjct: 565 LRQQTDTSDVILDDRTKHVGWKLKDADMIGYPIVVVVGKAWQWAQKLEVHCRQLDGLRED 624

Query: 429 MSLEEVINYASHRFS 443
           + ++ +I+Y     +
Sbjct: 625 VPVDNLIDYIRSLLA 639


>gi|196001647|ref|XP_002110691.1| hypothetical protein TRIADDRAFT_54976 [Trichoplax adhaerens]
 gi|190586642|gb|EDV26695.1| hypothetical protein TRIADDRAFT_54976 [Trichoplax adhaerens]
          Length = 1241

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/431 (16%), Positives = 136/431 (31%), Gaps = 74/431 (17%)

Query: 28   RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGR 85
            +  MI  H   G Y   P      + +      E  + G   +  P   S A L  E   
Sbjct: 861  KAEMIEYHDVSGCYILRPWSYAIWEYIKDFFDAEIKKLGVKNVYFPIFVSKAALEREKTH 920

Query: 86   YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
               +  E+  +    D  +       PT E VM   +   IKS+R+LP    Q     R 
Sbjct: 921  ISDFAPEVAWVTKSGDTELAEPIAIRPTSETVMYPSYAKWIKSHRDLPLKLNQWNNVVRW 980

Query: 142  ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            E +     +R+REFL ++ +S  ++ + ++     +   Y RI+                
Sbjct: 981  EFKHPQPFIRTREFLWQEGHSAFVSKKEAEEEVFTILELYRRIYE--------------- 1025

Query: 202  IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                                             E      +    +  E++         
Sbjct: 1026 ---------------------------------ELLAIPVVKGRKTEKEKFA---GGDFT 1049

Query: 262  VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               E   D+         RG +     + G  +S      ++  + K+      +    +
Sbjct: 1050 TTVEAFIDANG-------RGAQGATSHHLGQNFSKMFEIVYEHPETKEKAFVYQNSWGIS 1102

Query: 322  MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------LSK 374
             R +  +     D KG+I P  VA  ++ +I       +  D   KIY         L  
Sbjct: 1103 TRTLGVLCLVHGDNKGLIIPPKVADIQVIIIPCGISANLSEDERNKIYDSCSSYVKILKD 1162

Query: 375  VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLE 432
             G     D       G +F   +L G PL++ +G K + +++ V ++ R    +   + +
Sbjct: 1163 GGIRADCDTRDNYSAGWKFNHYELKGVPLRMELGPKDIKNNQFVTVR-RDNAQKSSSNAD 1221

Query: 433  EVINYASHRFS 443
              + +     +
Sbjct: 1222 NAVEHIKMLLN 1232


>gi|298385691|ref|ZP_06995249.1| proline--tRNA ligase [Bacteroides sp. 1_1_14]
 gi|298261832|gb|EFI04698.1| proline--tRNA ligase [Bacteroides sp. 1_1_14]
          Length = 497

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 147/426 (34%), Gaps = 49/426 (11%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +   + + KE   +                          +       +   +    + E
Sbjct: 82  AEHVEGFAKECAVVTH-----------------------YRLKNAEDGSGVVVDPAAKLE 118

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                          ++      +     ++Y     SY  +       +   R E    
Sbjct: 119 ---------------EELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+     G T     ++  +  I   N  + +       V       +A    
Sbjct: 164 LFLRTAEFL--WQEGHTAHATREEAEEEAIRMLNV-YSEFAEKYMAVPVVKGVKSANERF 220

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L     E      + ++ G   + G  ++      F   + K  YV   S+G+ + 
Sbjct: 221 AG-ALDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +      E I A+L  +G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISV 338

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E ++ + +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCDGIETYV 398

Query: 439 SHRFSN 444
                 
Sbjct: 399 QKLLEE 404


>gi|302818920|ref|XP_002991132.1| hypothetical protein SELMODRAFT_132981 [Selaginella moellendorffii]
 gi|300141063|gb|EFJ07778.1| hypothetical protein SELMODRAFT_132981 [Selaginella moellendorffii]
          Length = 528

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 144/421 (34%), Gaps = 76/421 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + V + +  +   TG   M  P L     +  E+   + +  E+  +     K
Sbjct: 86  PYGYAIWEFVQSWLDAKFKETGHSNMYFPQLIPYSFIEKETSHVEGFSPELALVTIGGGK 145

Query: 103 AMIY----GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E ++  +F   I+S+R+LP    Q     R E R     +R+ EFL +
Sbjct: 146 ELEEKLVVRPTSETMVNHMFAQWIRSHRDLPLLVNQWANVTRWERR-TKPFIRTLEFLWQ 204

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T + ++    +M   Y                                     
Sbjct: 205 EGHTAHATAQEAEEEALRMIEVYRTF---------------------------------- 230

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                           E      I+   S +E++                    E     
Sbjct: 231 --------------AVEQAAMPVIVGRKSRLERFAG-----------ATCTYTIEAMMGD 265

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G     G  ++      F   +G   ++   S+G+ + R+V  +I +  D KG+
Sbjct: 266 RRALQAGTSHNLGQNFARAFETQFTDVNGDLQHIWQTSWGM-STRMVGGIIMTHGDDKGL 324

Query: 339 IWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
           + P  +AP ++ ++ I       +    A  K+ + +   G  V  D   ++  G +F  
Sbjct: 325 MLPPKLAPIQVVIVPIWKKGDEQESVLQAAHKVESLVRAAGIRVKLDTFDQRTPGWKFNH 384

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIRED-MSLEEVINYASHRFSNNRPV 448
            +L G P+++ +G K V+++ V +  R             M    +I++   +  + +  
Sbjct: 385 WELKGVPIRIEIGPKDVANNSVVVARRDVPGKAGKEFGIFMERSVLIDHLRAKLDDIQSS 444

Query: 449 L 449
           L
Sbjct: 445 L 445


>gi|29346339|ref|NP_809842.1| prolyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|81445136|sp|Q8A988|SYP_BACTN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|29338234|gb|AAO76036.1| prolyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 497

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 147/426 (34%), Gaps = 49/426 (11%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +   + + KE   +                          +       +   +    + E
Sbjct: 82  AEHVEGFAKECAVVTH-----------------------YRLKNAEDGSGVVVDPAAKLE 118

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                          ++      +     ++Y     SY  +       +   R E    
Sbjct: 119 ---------------EELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+     G T     ++  +  I   N  + +       V       +A    
Sbjct: 164 LFLRTAEFL--WQEGHTAHATREEAEEEAIRMLNV-YGEFAEKYMAVPVVKGVKSANERF 220

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L     E      + ++ G   + G  ++      F   + K  YV   S+G+ + 
Sbjct: 221 AG-ALDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +      E I A+L  +G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISV 338

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E ++ + +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCDGIETYV 398

Query: 439 SHRFSN 444
                 
Sbjct: 399 QKLLEE 404


>gi|150400311|ref|YP_001324078.1| prolyl-tRNA synthetase [Methanococcus vannielii SB]
 gi|171460844|sp|A6USJ4|SYP_METVS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150013014|gb|ABR55466.1| prolyl-tRNA synthetase [Methanococcus vannielii SB]
          Length = 461

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 88/459 (19%), Positives = 163/459 (35%), Gaps = 87/459 (18%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIR 58
           M  S+++  IL+               + G+  +    KG   +LP G K       I+R
Sbjct: 1   MEFSEWYSEILE---------------KAGIYDLRYPIKGCGVYLPYGFKIRRYSFEILR 45

Query: 59  EEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEV 113
           +  + T   E   P L   +L   E      +  E+  +        +  +   PT E  
Sbjct: 46  KLLDDTNHDETLFPMLIPENLLAKEGEHIKGFEDEVYWVTHGGKSPLEIKLALRPTSETT 105

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE-FLMKDAYSFDLTPEGSKH 172
           M  + +  IK + +LP   YQ+   FR E +    ++R RE    K+A++   T +    
Sbjct: 106 MYYMMKQWIKVHTDLPMKLYQVVNTFRYETKHTRPLIRLREIMSFKEAHTAHSTQDDCNK 165

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              +                         I G    E                       
Sbjct: 166 QIKEAIE----------------------IYGKFFDEIC--------------------- 182

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                    I  + S   +W     A   +  + +F   P+ K      +++G +   G 
Sbjct: 183 ---------IPVIISKRPEWDKFPGADYTMAFDTIF---PDGK-----TMQIGTVHNLGQ 225

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
            ++      F+  DG   Y     YGI + R +A++I    D KG++ P  VAP +I LI
Sbjct: 226 NFAKTFELEFETPDGNKDYAYQTCYGI-SDRAIASLIAIHGDEKGLVIPIDVAPIQIVLI 284

Query: 353 NI--KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
            +  K  +++  +  +++   L      V  DD   + G ++   ++ G PL++ +G + 
Sbjct: 285 PLLFKGKEEIVIEKIKELSKILKTK-YRVHVDDRDIRPGRKYNDWEIKGVPLRIEIGPRD 343

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + + K  I  R  G +  +    ++N     F + +  L
Sbjct: 344 IEEGKAVIVRRDNGQKMTVEAFNILNEVEKTFEDYKASL 382


>gi|160882791|ref|ZP_02063794.1| hypothetical protein BACOVA_00752 [Bacteroides ovatus ATCC 8483]
 gi|156111815|gb|EDO13560.1| hypothetical protein BACOVA_00752 [Bacteroides ovatus ATCC 8483]
          Length = 497

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 148/426 (34%), Gaps = 49/426 (11%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +   + + KE   +                          +       +   +    + E
Sbjct: 82  AEHVEGFAKECAVVTH-----------------------YRLKNAEDGSGVVVDPAAKLE 118

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                          ++      +     ++Y     SY  +       +   R E    
Sbjct: 119 ---------------EELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+     G T     ++  +  I   N  + +       V       +A    
Sbjct: 164 LFLRTAEFL--WQEGHTAHATREEAEEEAIRMLNV-YGEFAEKYMAVPVVKGVKSANERF 220

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L     E      + ++ G   + G  ++      F   + K  YV   S+G+ + 
Sbjct: 221 AG-ALDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ ++ I  +D+  +      E I A+L  +G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKLKALGISV 338

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E ++ E +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCEGIETYV 398

Query: 439 SHRFSN 444
            +    
Sbjct: 399 QNLLEE 404


>gi|289582184|ref|YP_003480650.1| prolyl-tRNA synthetase [Natrialba magadii ATCC 43099]
 gi|289531737|gb|ADD06088.1| prolyl-tRNA synthetase [Natrialba magadii ATCC 43099]
          Length = 493

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 68/415 (16%), Positives = 133/415 (32%), Gaps = 68/415 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG   +  P       L  E    + +  E+  +
Sbjct: 39  GFIVTKPRGYALWEAIQDALDGWFKETGVDNVYFPMFIPESFLEREKDIVEGFDPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D  ++ +   PT E ++        +S+R+LP    Q     R E        R+
Sbjct: 99  THGGHDELEERLAVRPTSESIIAPFMADWTRSHRDLPLRLNQWCSVVRWEATETKPFFRT 158

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           +EF+ ++ ++   T E                                        E   
Sbjct: 159 KEFMWQEGHTAHATDE------------------------------------SAWEEVWT 182

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             D  E                   +   I  L     +      A +    E L    P
Sbjct: 183 RLDQYEKVY---------------EEVLAIPVLRGKKPEHDKFPGADTTTTVEALM---P 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           + K      ++       G  ++     +F   D ++      S+G+ + R + A+I + 
Sbjct: 225 DGK-----SVQGATSHNLGQSFAEAFDISFVDEDEEERTAYTTSWGL-SWRALGALIMTH 278

Query: 333 HDGKGIIWPDSVAPFKISLINIKAH--DQVCRDACEKIYARLSKVGCDVFWDDMGEQ-IG 389
            D +G++ P ++AP +++++ I          +  + I   L + G  V  DD  E+  G
Sbjct: 279 SDDQGLVLPPTIAPTQVAIVPIWQEETKADVLEYSQNIADELEEAGFSVELDDRDERNPG 338

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +F   +L G PL++ +G   V D +V + HR          + +++        
Sbjct: 339 FKFNEHELNGVPLRLEIGPYEVEDEEVTLVHRPDNEEAVEDRDGIVDAVDDHLET 393


>gi|224130834|ref|XP_002320936.1| predicted protein [Populus trichocarpa]
 gi|222861709|gb|EEE99251.1| predicted protein [Populus trichocarpa]
          Length = 508

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 135/426 (31%), Gaps = 77/426 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +      E  +        P   S+  L  E    + +  E+  
Sbjct: 44  SGCYILRPWAMSIWEIMQVFFDAEIKKMKIKNCYFPLFVSSSVLEKEKDHIEGFAPEVAW 103

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   F   I+ +R+LP    Q     R E       +R
Sbjct: 104 VTKSGKSDLEIPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIR 163

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REFL ++ ++   T + +     ++   Y                        +  EF+
Sbjct: 164 YREFLWQEGHTAFATKQEADEEVLQILELY----------------------RRIYEEFL 201

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                         I    S +E++      TS      +   +
Sbjct: 202 A--------------------------IPIIKGKKSEMEKFAGGLYTTS------VEAFI 229

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     + RGI+       G  ++      F+   G+       S+   + R +  ++  
Sbjct: 230 PN----TGRGIQGATSHCLGQNFAKMFEINFENEKGEKGMAWQNSWAY-STRTIGVMVMV 284

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDM-GEQ 387
             D KG++ P  V+  ++ ++ +   D   Q   DAC      L + G     D      
Sbjct: 285 HGDDKGLVLPPKVSSVQVIVVPVPFKDANTQGIFDACAATVDTLCEAGIRAEADYRENYS 344

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSK-------VEIK--HRLTGIREDMSLEEVINYA 438
            G +++  ++ G PL++ +G K +++++         ++   R    + D+S + +    
Sbjct: 345 PGWKYSHWEMKGVPLRIEIGPKDLANNQASIPSLHFTVRAVRRDNAAKVDISCDNLAEKV 404

Query: 439 SHRFSN 444
                +
Sbjct: 405 KDMLDD 410


>gi|313885480|ref|ZP_07819230.1| proline--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619210|gb|EFR30649.1| proline--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 479

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 65/448 (14%), Positives = 146/448 (32%), Gaps = 82/448 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLM----LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
            SK++L  +Q+           LM    +R  MI +         P G +  +++ A   
Sbjct: 8   FSKWYLQTIQQA---------DLMDYSPVRGCMIFK---------PNGYELWEHIQANFD 49

Query: 59  EEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           +     G      P L     +  E    + +  E+  + +   + +             
Sbjct: 50  KRFKEEGVRNAYFPMLIPESFFTKEKDHIEGFAPELPWVTEAAGEKLEERLALRP----- 104

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
                                                           +     H+Y+K 
Sbjct: 105 -----------------------------------------------TSETMIGHAYSKW 117

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             SY  +   L   +   R E   +    + EF+     G T     ++ +D  +     
Sbjct: 118 INSYRDLPLMLNQWANVFRWEKRTLPFLRTSEFL--WQEGHTAHATGEEALDRTMRMLQV 175

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
            + ++I     V  +      +          S+ E      + ++ G   Y GTK++  
Sbjct: 176 -YKEVIEDVLAVPVFEGEKTPSERFAGAMNTFSV-EAMMQDGKAVQAGTSHYLGTKFAEA 233

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA- 356
               +  ++ +  +    S+G+ + R++ ++I    D +G++ P  +AP ++  I +   
Sbjct: 234 FDIKYLNSNNEHVHAFTTSWGV-STRLIGSLIMVHSDDQGLVLPPKIAPQQVVFIPVGPW 292

Query: 357 -HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +    +   +    L   G     DD   + G +F   +L G PL++ VG + + + +
Sbjct: 293 QKNPAIMEQINEWNQALQAKGVRTIIDDSDNRPGFKFNEWELRGAPLRIEVGPRDLENKQ 352

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
             +K R    +E ++ ++V++       
Sbjct: 353 AILKARDLSEKETVAADQVVDRVLAELD 380


>gi|170055177|ref|XP_001863466.1| prolyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167875210|gb|EDS38593.1| prolyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 315

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 106/312 (33%), Positives = 160/312 (51%), Gaps = 31/312 (9%)

Query: 21  ASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADL 79
            S +LML  G+I Q   G +  +PL Q++L     ++     R   A ++++P L +A L
Sbjct: 12  KSQRLMLEQGLIRQAGNGTFYLMPLLQRSLQKAVDLVDHFMQRHASAQKLTLPILTAASL 71

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLK 138
           W +SGR +S G E++R  DR+ K  I GPTHEE +T  +      SYR  P   YQI  K
Sbjct: 72  WRQSGRLESAGPELMRTTDRHGKQQILGPTHEESITALVASISPVSYRAFPLRLYQISTK 131

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           FRDE++PRFG+MR++EFLMKD Y+FD+    ++ +Y ++  +Y ++F  +G+  + +R +
Sbjct: 132 FRDEMKPRFGLMRAKEFLMKDLYTFDVGRGEARETYEEVNEAYRKLFDAVGVGYVKVRGD 191

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +G IGG  SHE+   ++ GE Q+ C  +                  +    E +      
Sbjct: 192 TGTIGGSESHEYHFPSEVGEDQLVCCGEC----------------GMGWNQEMFGG---- 231

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                     +           GIEV H F    KYS  M A F   +GK   +QMG YG
Sbjct: 232 ---------CERCGGANVSRQAGIEVAHAFILDDKYSKTMGAKFLAQNGKPETLQMGCYG 282

Query: 319 IGAMRVVAAVIE 330
           IG  R++AA +E
Sbjct: 283 IGVTRLLAAGVE 294


>gi|304384417|ref|ZP_07366823.1| proline--tRNA ligase [Prevotella marshii DSM 16973]
 gi|304334515|gb|EFM00802.1| proline--tRNA ligase [Prevotella marshii DSM 16973]
          Length = 493

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 63/426 (14%), Positives = 139/426 (32%), Gaps = 49/426 (11%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+++  +  Q +  G     P G    + +   +      TGA     P L     L  E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQQQLDRMFKETGAQNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +     + KE   +                          +   +       +    + E
Sbjct: 82  AEHVKGFAKECAVVTH-----------------------YRLKASEEGNSVVVDPAAKLE 118

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                          ++      +     ++Y     S+  +          MR E    
Sbjct: 119 ---------------EELIIRPTSETIIWNTYKNWIHSWRDLPLMCNQWCNVMRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+      E     +                   +   +         + ++ 
Sbjct: 164 PFLRTSEFLWQ----EGHTAHATREEAEAEARTMLGVYARFAEEWMAVPVIQGVKSETER 219

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L     E      + ++ G   + G  ++     TF   + K  YV   S+G+ + 
Sbjct: 220 FAGALDTYTIEAMMQDGKALQSGTSHFLGQNFAKSFDVTFLNKENKPEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ +I I  + +      E++      L K+G  V
Sbjct: 279 RLIGALIMTHSDDNGLVLPPKLAPIQVVVIPIARNAEQLSAIDERLRPVIEGLRKLGISV 338

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             DD   ++ G +FA  +L G P+++++G + + +  +E+  R T  +E + +E ++++ 
Sbjct: 339 KLDDADNKRPGFKFADYELKGVPVRLVMGGRDLENGTIELMRRDTLEKETLPIEGIVSHI 398

Query: 439 SHRFSN 444
                 
Sbjct: 399 QTLLDE 404


>gi|217967219|ref|YP_002352725.1| prolyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
 gi|217336318|gb|ACK42111.1| prolyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
          Length = 480

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 82/422 (19%), Positives = 153/422 (36%), Gaps = 73/422 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +N+  I+ E+   TG +    P       L  E+   + +  ++  +
Sbjct: 37  GCMVIKPYGYAIWENMQRILDEKIKETGHVNAYFPLFIPKSFLEKEAEHVEGFSPQVAWV 96

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               D+ +       PT E ++  ++   I+S+R+LP    Q     R E   R  + R+
Sbjct: 97  TKGGDEDLFEPLAVRPTSEAIICSMYSKWIQSWRDLPILINQWANVVRWEKETRPFL-RT 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E ++    +M   Y                           EF+ 
Sbjct: 156 TEFLWQEGHTAHRTFEEAEEEALRMLNVY--------------------------KEFVE 189

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                           D  IP        I    +  E++              L     
Sbjct: 190 N---------------DLAIPV-------IAGKKTENEKFAG-----------ALHTYSI 216

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      R ++ G     G  ++      F+  DG+  YV   S+G+ + R++ A+I + 
Sbjct: 217 EVLLADGRALQAGTSHNLGQHFAKAFDIMFQDVDGERKYVWQTSWGV-STRLIGALIMTH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGE--Q 387
            D  G++ P  VAP++I +I I  ++       +  ++IY  L K    V  D   E   
Sbjct: 276 GDDYGLVLPPRVAPYQIVIIPIWKNETDKVKVYNYIDEIYEVLKKY-FRVKVD-RDEEHT 333

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            G +F   +L G P+++ +G K V   ++ +  R    +  +  E +I    +   + + 
Sbjct: 334 PGWKFNEWELKGVPVRLEIGPKEVEKQEIYVARRDLRTKISIRRENMIQDLENLLKDIQK 393

Query: 448 VL 449
            L
Sbjct: 394 TL 395


>gi|124027657|ref|YP_001012977.1| bifunctional aminoacyl-tRNA synthetase [Hyperthermus butylicus DSM
           5456]
 gi|123978351|gb|ABM80632.1| Bifunctional aminoacyl-tRNA synthetase [Hyperthermus butylicus DSM
           5456]
          Length = 380

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 73/403 (18%), Positives = 130/403 (32%), Gaps = 67/403 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G+  WLP G +    +  ++RE  + TG  E+ +P L    L   ES     +  E+  +
Sbjct: 36  GMGIWLPYGFQLRRRIIELVREVLDSTGHEEILMPLLIPEHLLRKESEHIRGFEGEVYWV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                + +                                                    
Sbjct: 96  THGGHEPLDVKLALRPT------------------------------------------- 112

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                S          SY ++   Y +I      ++   R            E   + D+
Sbjct: 113 --SETSITYMESFWIKSYRQLPKKYYQIVSIFRYETKATRPMIRLREVTTFKEAHTVHDS 170

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNS--IVEQWTAPYAATSDVHNEKLFDSLPEN 274
                  +   +   I      FD++          +W     A   V+       +P+ 
Sbjct: 171 ----FADADRQVAEAIELYKKIFDELGIPYVISRRPEWDKFAGA---VYTVAFDTIMPDG 223

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           K      +++G + + G  +++P     +  D    Y    SYGI + R+VA VI    D
Sbjct: 224 K-----TLQIGTVHHLGQNFTVPFDVKIQLRDESIDYAWQTSYGI-SDRIVATVIAIHGD 277

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQV-----CRDACEKIYARLSKVGCDVFWDDM-GEQI 388
            +G + P +VAP ++ +I I A D         +  EK+   L K G     DD    + 
Sbjct: 278 DRGAVLPPNVAPIQVVVIPIPAGDDEEKKRLVAEHLEKVKEVLKKAGIRFRVDDREDVRP 337

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           G +F   +  G P+++ VG +      V +  R T  +  + L
Sbjct: 338 GRKFYEWEAKGVPVRIEVGLREAETGTVLVARRDTLEKTVVKL 380


>gi|302754528|ref|XP_002960688.1| hypothetical protein SELMODRAFT_74713 [Selaginella moellendorffii]
 gi|300171627|gb|EFJ38227.1| hypothetical protein SELMODRAFT_74713 [Selaginella moellendorffii]
          Length = 495

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 78/416 (18%), Positives = 135/416 (32%), Gaps = 86/416 (20%)

Query: 37  KGIYSWLPLGQKALDN-------VNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDS 88
            G Y  LP      D        +   +  E    G      P   S   L  E    + 
Sbjct: 52  SGCYILLPWSYAIWDVTLFLLSFLQRFLDGEIKNLGVENAYFPLFVSERALVTEKKHVEG 111

Query: 89  YGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           +  E+  +    +      +   PT E VM  IF   I+ +R+LPF   Q     R E +
Sbjct: 112 FAPEVAWVTKSGESALEVPIAIRPTSETVMYPIFAKRIRGHRDLPFKINQWCNVVRWEFK 171

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
                +RSREFL ++ ++   T + +      +   Y R++                   
Sbjct: 172 HPTPFIRSREFLWQEGHTAYATKKEADEEVYAVLDLYRRVYE------------------ 213

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                                         E      I  + S VE++      T     
Sbjct: 214 ------------------------------ELLAIPVIKGVKSEVEKFAGGLYTT----T 239

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
            + F  L      + RGI+       G  ++      F+    +   V   S+G+   R 
Sbjct: 240 VEAFIPL------TGRGIQGATSHCLGQNFAEMFDIVFEDEKRERKKVWQNSWGL-TTRT 292

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +  +I    D K                      Q   DA      +L   G  V  D  
Sbjct: 293 IGVMIMVHGDDKVPYK--------------DVDTQKLFDAAASTARQLKAAGLRVKEDTR 338

Query: 385 GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
                G +++  +L G PL+V +G + +++S+V +  R TG +ED+ ++++++  S
Sbjct: 339 DNYSPGWKYSNWELKGVPLRVEIGPRDLANSQVRVVRRDTGAKEDVPMDKIVDRIS 394


>gi|300771911|ref|ZP_07081782.1| proline--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761297|gb|EFK58122.1| proline--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 490

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 133/415 (32%), Gaps = 49/415 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + + AI+ +    TG      P       +  E+   + +  E    
Sbjct: 33  GCMVIKPYGYAIWERMQAILDKMFKDTGHSNAYFPLFIPKSFFSKEASHVEGFATE---- 88

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                               +   +                K  +EL  R          
Sbjct: 89  ------------------CAVVTHYRLKNDGAGNIIVDEDAKLEEELIVRP--------- 121

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     ++Y     SY  +   +   +  +R E        + EF+     
Sbjct: 122 --------TSETIIWNTYRGWIESYRDLPILVNQWANVVRWEMRTRLFLRTAEFL--WQE 171

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T    S++ ++         +         V                 L     E   
Sbjct: 172 GHTAHATSQEAIEE-TEKMLGVYAHFAENYLAVPVVRGRKTENERFAG-ALDTYCIEALM 229

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++      F   +GK  +V   S+G+ + R++ A+I +  D +
Sbjct: 230 QDGKALQAGTSHFLGQNFAKAFDVKFTSKEGKQEHVWASSWGV-STRLMGALIMAHSDDQ 288

Query: 337 GIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMG-EQIGSQF 392
           G++ P  +AP ++ ++ I   D+         + + A L      V +DD   ++ G +F
Sbjct: 289 GLVLPPMLAPVQVVIVPIYRTDEEKTNIDVFVDGLSAELKAKNISVKYDDRDTQRPGFKF 348

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           A  +L G PL+V VG++ + +  VE+  R T  +E +S E +           + 
Sbjct: 349 AEWELKGVPLRVAVGARDMQNGTVELARRDTQTKETVSQEGLSALIEGLLDTIQE 403


>gi|307244722|ref|ZP_07526824.1| proline--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
 gi|306491899|gb|EFM63950.1| proline--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
          Length = 481

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 129/409 (31%), Gaps = 59/409 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + +          TG   +  P L    L   E+   + +  E+   
Sbjct: 40  GFMVIKPYGFALWEKIRDYADGLFKETGHKNVYFPLLIPESLLNKEAEHVEGFAPEV--- 96

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                             +      + L
Sbjct: 97  -------------------------------------------------AWVTQGGNKVL 107

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +       +       Y K   SY ++       +  +R E        + EF+     
Sbjct: 108 EERLAVRPTSETIICTMYAKWLNSYRQLPFLYNQWNSVVRWEKSTRPFLRTSEFL--WQE 165

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ +D  +    T +  +      +       + +          ++ E   
Sbjct: 166 GHTIHETEQEAIDETLQQLAT-YKKVAEDLMAIPVIDGKKSESEKFAGASDTYTI-EAMM 223

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++     TF   DG   +    S+GI + R++  +I    D +
Sbjct: 224 HDGKALQSGTSHFLGQHFTKAFDITFSDRDGNLAHPYHTSWGI-STRLIGGLIMVHSDNR 282

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
           G++ P  +AP ++ +I I A+     +  +K+ A L   G  V  DD      G +F  A
Sbjct: 283 GLVLPPKMAPTQVIIIPIAANKGGVMEVVDKVAADLKAKGITVEVDDRSNYSPGYKFNDA 342

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G P+++ +G K +  ++     R    + +MSL+ V +  S    +
Sbjct: 343 EMKGIPVRLEIGPKDIEKNQALAFRRDELTKSEMSLDTVADQVSTLLDD 391


>gi|254569756|ref|XP_002491988.1| Protein with similarity to tRNA synthetases [Pichia pastoris GS115]
 gi|238031785|emb|CAY69708.1| Protein with similarity to tRNA synthetases [Pichia pastoris GS115]
 gi|328351517|emb|CCA37916.1| prolyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 564

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 83/205 (40%), Positives = 122/205 (59%), Gaps = 2/205 (0%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           H ++L++  I+Q + GI  WLPLG +    +  +IR+  ++ G +EM + +L S  LW  
Sbjct: 32  HDMLLQSRFIYQPAAGIVHWLPLGLRTYKKLQNVIRKRMDQAGGLEMELSSLSSKHLWER 91

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           + R+D+   E+ +  D  D+     PT EE +T++      SY++LP   YQI  K+RDE
Sbjct: 92  TKRWDN--NELFKFKDSKDRDYCLVPTCEEEITNLVGDLCSSYKDLPLLVYQISRKYRDE 149

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           LRPR G++R REFLMKDAYSFDLT E    SY+ +  +Y RIF  L L      A+SG I
Sbjct: 150 LRPRGGLLRGREFLMKDAYSFDLTKEDGLKSYDNVNEAYRRIFQDLKLPVTVANADSGSI 209

Query: 203 GGDLSHEFIVLADTGETQVFCSKDF 227
           GGDLS E+ ++ ++GE  +F     
Sbjct: 210 GGDLSLEYHLIHESGEDILFRCNSC 234



 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 7/175 (4%)

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
           NT+  D+  L      +T       +    +      +        IEVGH FY   KYS
Sbjct: 332 NTNMPDLKVLYHRNSMFTFTDIPIVEAIAGERCYECEKGTLSEHTAIEVGHTFYLDKKYS 391

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
            P+  T      +   V MG YGIG  R++AA+ ++S D  G+ WP  +AP++I+L++ K
Sbjct: 392 SPLDCTVVNEQNEQTTVYMGCYGIGVSRLIAAIAQTSRDEVGLTWPQIIAPYQITLLSNK 451

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGS 408
              +   D   +I +       DV  D+      +G +   + + G PLQ+IVG 
Sbjct: 452 TSSKKNLDTVTEILSS-----FDVQVDNRDGKFSMGHKLKQSKVAGIPLQIIVGK 501


>gi|297527274|ref|YP_003669298.1| prolyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
 gi|297256190|gb|ADI32399.1| prolyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
          Length = 483

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 82/427 (19%), Positives = 148/427 (34%), Gaps = 66/427 (15%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
            EI  H  ++ T       KG+  W+P G KAL  +  I+      TG  E   PT+   
Sbjct: 23  HEILKHAKIVDT---RYPVKGMNVWMPYGLKALRMIQKIMINLLEETGHEEAYFPTMIPE 79

Query: 78  DLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            ++  E      +G E                  E  MT  F   +          Y + 
Sbjct: 80  SVFSKEKDFLQGFGGE--------------TFVVEGTMTKKFNEKLFVRPTSETVMYYMW 125

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             +                               K         Y        L+     
Sbjct: 126 NIW----------------------IKGRKDLPLKMYQIVNVFRYETKMTHPILRVR--- 160

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ--WTA 254
                +    +H     ++  E Q+       +  +      FD ++    IV+   W  
Sbjct: 161 ---EIMSFIEAHTAHATSEEAEKQI-------NEALNIYKKFFDSLLLPYFIVKTPPWDT 210

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              A    +N     ++P+ K     G+E+G +   G K++      F  +DGK  YV  
Sbjct: 211 FAGAE---YNYDFITAMPDGK-----GLELGSVINLGQKFARAFDIKFMDSDGKTKYVYQ 262

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLS 373
             YG+ + R + AVI    D KG+  P  +AP ++ ++ I   D+    +    I  +LS
Sbjct: 263 TCYGV-SERTLGAVIAIHGDKKGLFLPPIIAPIQVVIVPIARRDEQDIIEYARGISEKLS 321

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           + G   + DD  E   G ++   ++ G P ++ +G + ++++ V I  R    +  +++ 
Sbjct: 322 EAGIRTYLDDDPEHTPGWKYYFWEMKGVPTRIEIGRRELNNNTVTIARRDGAKKITVNIN 381

Query: 433 EVINYAS 439
           E+I+   
Sbjct: 382 ELIDKLR 388


>gi|284166458|ref|YP_003404737.1| prolyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
 gi|284016113|gb|ADB62064.1| prolyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
          Length = 493

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 68/415 (16%), Positives = 129/415 (31%), Gaps = 68/415 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG   +  P       L  E    + +  E+  +
Sbjct: 39  GFIVTKPRGYALWEGIQDALDGWFKETGVDNVYFPMFIPESFLEREKDIVEGFDPEVAWV 98

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E ++        +S+R+LP    Q     R E        R+
Sbjct: 99  TQGGHEELEERLAVRPTSESIIAPFMADWTRSHRDLPLRINQWCSVVRWEATETKPFFRT 158

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           +EF+ ++                                     A       ++      
Sbjct: 159 KEFMWQEG--------------------------------HTAHASDEGAWDEVWTRLGQ 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             +  E  +                    I  L     +      A +    E L    P
Sbjct: 187 YEELYEDVLA-------------------IPVLRGKKPEHDKFPGADTTTTVEALM---P 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           + K      ++       G  ++     TF   D ++      S+G+ + R + A+I + 
Sbjct: 225 DGK-----SVQGATSHNLGQSFAEAFDITFVDEDEEERTAYTTSWGL-SWRALGALIMTH 278

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQ-IG 389
            D +G++ P ++AP ++ ++ I   D  +   +  E I   L   G  V  DD  E+  G
Sbjct: 279 SDDQGLVLPPTIAPTQVVIVPIWQEDTKEDVLEYSENIADELEDAGFRVELDDRDERNPG 338

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +F   +L G PL++ +G   V D +V + HR          +E++         
Sbjct: 339 FKFNEHELNGVPLRLEIGPYEVEDEEVTMVHRPDNEESVEDRDEIVESVDEHLDE 393


>gi|195443826|ref|XP_002069593.1| GK11601 [Drosophila willistoni]
 gi|194165678|gb|EDW80579.1| GK11601 [Drosophila willistoni]
          Length = 1717

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 61/421 (14%), Positives = 113/421 (26%), Gaps = 71/421 (16%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
             G Y            +      E  R G  E   P   S  +   E      +  E+  
Sbjct: 1248 SGCYILRHWSFAIWKAIKNWFDAEITRRGVKECYFPIFVSKAVLEREKTHIADFAPEVAW 1307

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    +  +       PT E VM   +   I+SYR+LP    Q     R E +       
Sbjct: 1308 VTKSGESDLAEPIAVRPTSETVMYPAYAKWIQSYRDLPIKLNQWNNVVRWEFK------- 1360

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                           P      +                K +    +             
Sbjct: 1361 ------------HPQPFLRTREFLWQEGHTAYANKDEADKEVLEILD------------- 1395

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                     ++         IP       +        +     Y  T +          
Sbjct: 1396 ---------LYALIYTHLLAIPVMKGRKTEKE------KFAGGDYTTTVEAFISA----- 1435

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                  S R I+     + G  +S      ++  + +       +      R +  +I  
Sbjct: 1436 ------SGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKFVYQNSWGITTRTIGVMIMV 1489

Query: 332  SHDGKGIIWPDSVAPFKISLIN----IKAHDQVCRD---ACEKIYARLSKVGCDVFWDDM 384
              D +G++ P  VA  +  ++     +   D+   +   AC+++  RL         D  
Sbjct: 1490 HADNQGLVLPPHVACIQAIVVPCGITVNTKDEERAELLGACKQLEQRLIGAEVRCEGDYR 1549

Query: 385  GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                 G +F   +L G P+++ VG K +   ++    R TG +  + L +V         
Sbjct: 1550 DNYSPGWKFNHWELKGVPIRIEVGPKDLKAQQIVAVRRDTGEKLTIPLADVEKKIPALLE 1609

Query: 444  N 444
             
Sbjct: 1610 T 1610


>gi|147835152|emb|CAN65677.1| hypothetical protein VITISV_002012 [Vitis vinifera]
          Length = 435

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 91/280 (32%), Gaps = 26/280 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   +E  R D       L L +  I  +   G+  W P G      +    ++   
Sbjct: 84  KAYLHFKEEAKRRDHRRLGIDLDLFS--IQDEAGGGLVFWHPKGAIVRHIIEDSWKKIHI 141

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +  ADLW  SG  D Y + M       D+     P +      I++  +
Sbjct: 142 EHGYDLLYTPHVARADLWKTSGHLDFYRENMYSQITIEDELYQLRPMNCPYHILIYKRKL 201

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+ P    ++   +R EL     G+ R R F   DA+ F L  +        +    
Sbjct: 202 HSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDE-IRGVLDLI 260

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I  + G     +   + P                  +   + D  +    +     DD
Sbjct: 261 EEILLQFGFSKYEVNLSTRP-----------------EKAVGADDIWEKATSALRDALDD 303

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                 I E   A Y    D+   K+ D+L    + S   
Sbjct: 304 KGWSYRIDEGGGAFYGPKIDL---KIEDALGRKWQCSTIQ 340



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L   G        GE+  +    ++     L  +VG K V    V ++ R  G    M
Sbjct: 344 QQLKANGIQAEV-CNGERFPTLIRNSEKQRITLMAVVGPKEVETQIVTVRSRFGGELGTM 402


>gi|302803187|ref|XP_002983347.1| hypothetical protein SELMODRAFT_118068 [Selaginella moellendorffii]
 gi|300149032|gb|EFJ15689.1| hypothetical protein SELMODRAFT_118068 [Selaginella moellendorffii]
          Length = 495

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 79/416 (18%), Positives = 135/416 (32%), Gaps = 86/416 (20%)

Query: 37  KGIYSWLPLGQKALDN-------VNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDS 88
            G Y  LP      D        +   +  E    G      P   S   L  E    + 
Sbjct: 52  SGCYILLPWSYAIWDVTLFLLSFLQRFLDGEIKNLGVENAYFPLFVSERALVTEKKHVEG 111

Query: 89  YGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           +  E+  +    +      +   PT E VM  IF   I+ +R+LPF   Q     R E +
Sbjct: 112 FAPEVAWVTKSGESALEVPIAIRPTSETVMYPIFAKRIRGHRDLPFKINQWCNVVRWEFK 171

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
                +RSREFL ++ ++   T E +      +   Y R++                   
Sbjct: 172 HPTPFIRSREFLWQEGHTAYATKEEADEEVYAVLDLYRRVYE------------------ 213

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                                         E      I  + S VE++      T     
Sbjct: 214 ------------------------------ELLAIPVIKGVKSEVEKFAGGLYTT----T 239

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
            + F  L      + RGI+       G  ++      F+    +   V   S+G+   R 
Sbjct: 240 VEAFIPL------TGRGIQGATSHCLGQNFAEMFDIVFEDEKRERKKVWQNSWGL-TTRT 292

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +  +I    D K                      Q   DA      +L   G  V  D  
Sbjct: 293 IGVMIMVHGDDKVPYK--------------DVDTQKLFDAAASTARQLKAAGLRVKEDTR 338

Query: 385 GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
                G +++  +L G PL+V +G + +++S+V +  R TG +ED+ ++++++  S
Sbjct: 339 DNYSPGWKYSNWELKGVPLRVEIGPRDLANSQVRVVRRDTGAKEDVPMDKIVDRIS 394


>gi|167044354|gb|ABZ09032.1| putative anticodon binding domain protein [uncultured marine
           crenarchaeote HF4000_APKG6C9]
          Length = 616

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 125/415 (30%), Gaps = 49/415 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   + P G+     +   + ++    G IE+  P +  +        + S      R 
Sbjct: 216 SGNMRFYPNGRLIKSQIEQYVTDKVRDYGGIEVETPIMYDS-------HHPSMESYFNRF 268

Query: 97  ------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ-IQLKFRDELRPR-FG 148
                  D   + +    +       +      SY+NLP+  Y+  +  FR E      G
Sbjct: 269 PARQYSIDSEGRHLFLRFSACFGQFLMASDFQLSYKNLPYKLYELTRYSFRREQSGELVG 328

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R R F M D ++F      +   + K F                       + G    
Sbjct: 329 LRRLRAFTMPDCHAFCKDMPQAIDEFGKRFD-----------------LSREVLSGLGIE 371

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E         T+ F +K+                +    +VE W   +            
Sbjct: 372 ENDYETGIRFTEDFYNKN------KELIKQMVSKVGKPVLVEMWKEKFFYFVLKWEFNFV 425

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ--MGSYGIGAMRVVA 326
           D L     +S   I+V        + +     TF     +  Y      S      RV+ 
Sbjct: 426 DDLGRASALSTDQIDV--------ENAKRYGITFTDEKNEQQYPIILHNSPSGAVERVIY 477

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           A++E                +   +   +        +    +  +L++    V  DD  
Sbjct: 478 ALLEKFAKQIKDGKRPQFPLWLAPIQVRLIPLKDDFLEFSSDLANKLTEQNIRVDIDDRN 537

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           + IG +   A+       +++G + V+ S + ++ R TG    +S+E+ +     
Sbjct: 538 DTIGKRIRDAEKEWISYVLVIGEREVNSSSLSVRDRTTGDVRQLSIEDFVKEIKD 592


>gi|687792|gb|AAC43729.1| putative threonyl-tRNA synthetase; similar to E. coli threonyl-tRNA
           synthetase SwissProt Accession Number P00955
           [Haemophilus influenzae]
 gi|1587744|prf||2207242E ORF 4
          Length = 443

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 81/216 (37%), Gaps = 5/216 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            ++Y   + +   RD       L L    + + + G+  W   G      +   +R +  
Sbjct: 229 LAEYLTRLEEAAKRDHRKIGKALDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRTKLK 286

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           +    E+  P +    LW ++G + +Y  +++      ++     P +      IF   +
Sbjct: 287 QYDYQEVKGPFMMDRVLWEKTGHWQNY-ADLMFTTQSENREYAIKPMNCPGHVQIFNQGL 345

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           KSYR+LP    +     R+E      G+MR R F   DA+ F  T +  +          
Sbjct: 346 KSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEDQIESEVTSCIKMV 404

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
             I+   G  +I ++  + P     S E    A+ G
Sbjct: 405 YDIYSTFGFTNIAVKLSTRPENRIGSDEMWDRAEAG 440


>gi|14521542|ref|NP_127018.1| threonyl-tRNA synthetase [Pyrococcus abyssi GE5]
 gi|14548274|sp|Q9UZ14|SYT_PYRAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|5458761|emb|CAB50248.1| thrS threonyl-tRNA synthetase [Pyrococcus abyssi GE5]
          Length = 625

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 144/429 (33%), Gaps = 46/429 (10%)

Query: 24  KLMLRTGMIHQH---SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-- 78
           KLML   ++        G   + P G+     +   + E+    GA+E+  P +   +  
Sbjct: 209 KLMLEHELVDYEPGSDPGNLRYYPKGRLIKSLLEQYVTEKVIEYGAMEVETPIMYDFEHP 268

Query: 79  -LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            L     R+ +       +    DK              I +  I SYRNLP   Y++  
Sbjct: 269 ALEKYLNRFPARQ----YIVLSGDKRYFLRFAACFGQFMIKKDAIISYRNLPLRMYELTR 324

Query: 138 KF--RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               R++     G+ R R F M D ++     E +K  + K F   + +   +GL     
Sbjct: 325 YSFRREKRGELSGLRRLRAFTMPDMHTLAKDIEQAKEEFKKQFKLSMEVLEGVGLTP--- 381

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                              +  E  +  ++DF          +   +I    ++E W   
Sbjct: 382 -------------------EDYEVAIRFTEDFWKEH-KDFIVELVKLIGKPVLIEMWKQR 421

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           +            D+L +   +S   I+V        + +     T+   +G++ Y  + 
Sbjct: 422 FFYFILKFEFNFVDNLDKAAALSTVQIDV--------ENAERFGITYYDENGEEKYPLIL 473

Query: 316 SYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARL 372
                    RV+ A++E                +   +   +    +   D    +  +L
Sbjct: 474 HCSPSGAIERVMYAILEKQAKLMNEGKKPMFPLWLSPIQVRVIPVSEEYLDYALYVAGKL 533

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                 V  DD  E++  +   A+    P  V+VG++   +  + ++ R  G + +  +E
Sbjct: 534 EGAKIRVDVDDEDERLNKKIRRAEKEWIPYIVVVGAREKENGTITVRRREDGKQYETRIE 593

Query: 433 EVINYASHR 441
           E+I     +
Sbjct: 594 ELIKEIKEK 602


>gi|332876867|ref|ZP_08444621.1| proline--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685150|gb|EGJ57993.1| proline--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 492

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 65/416 (15%), Positives = 127/416 (30%), Gaps = 45/416 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G     P G    + + A +      TG      P       +      +    E     
Sbjct: 33  GCMVIKPYGYAIWEKMQAELDRMFKETGHTNAYFPIFIPKSYFEA----EEKNAEGFAKE 88

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
                         E    I     K    L                             
Sbjct: 89  CAVVTHYRLKTDPNEKGKLIVDPEAKLEEELIVRPT------------------------ 124

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                   +      +Y     SY  +   +   +  +R E        + EF+     G
Sbjct: 125 --------SESIIWSTYKNWIQSYRDLPILINQWANVVRWEMRTRLFLRTAEFL--WQEG 174

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            T     ++ ++      N    + +     V         T             E    
Sbjct: 175 HTAHATKEEAIEESERMMNVYA-NFVENFMAVPVIRGFKTETERFAGADET-YCIEAMMQ 232

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + ++ G   + G  ++      +   DGK  YV   S+G+ + R++ A+I +  D  G
Sbjct: 233 DGKALQAGTSHFLGQNFAKAFDVKYATKDGKQEYVWASSWGV-STRLMGALIMTHSDDNG 291

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKI---YARLSKVGCDVFWDDMG-EQIGSQFA 393
           ++ P ++AP ++ ++ I           E+I      L K G  V +DD   +  G +F 
Sbjct: 292 LVLPPNLAPIQVVIVPIYKGAAQLESVRERISPLMEALRKQGISVKFDDRDTQSPGFKFH 351

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             +L G P+++ VG + + ++  E+  R T  +E +S +++I + +      +  L
Sbjct: 352 EYELKGVPVRLAVGQRDLENNTFEVARRDTLTKETVSGDDIIAHIAQLLKEIQENL 407


>gi|212693169|ref|ZP_03301297.1| hypothetical protein BACDOR_02676 [Bacteroides dorei DSM 17855]
 gi|237709909|ref|ZP_04540390.1| prolyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|237725421|ref|ZP_04555902.1| prolyl-tRNA synthetase [Bacteroides sp. D4]
 gi|265753562|ref|ZP_06088917.1| prolyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
 gi|212664274|gb|EEB24846.1| hypothetical protein BACDOR_02676 [Bacteroides dorei DSM 17855]
 gi|229436108|gb|EEO46185.1| prolyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4]
 gi|229456002|gb|EEO61723.1| prolyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|263235276|gb|EEZ20800.1| prolyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
          Length = 496

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 137/412 (33%), Gaps = 48/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   + +    TG +    P L     L  E+   + + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSYLSREAEHVEGFAKECAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +       +   +    + E              
Sbjct: 96  TH-----------------------YRLKNAEDGSGVIVDPAAKLE-------------- 118

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            ++      +      +Y     SY  +       +  MR E        + EF+     
Sbjct: 119 -EELIIRPTSETIIWSTYKNWINSYRDLPILCNQWANVMRWEMRTRLFLRTAEFL--WQE 175

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++         +  + D       V       +A        L     E   
Sbjct: 176 GHTAHATREEAEAEAQKMLHV-YGDFAEKYMAVPVIKGVKSANERFAG-ALDTYTIEGLM 233

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++   +  F   + K  YV   S+G+ + R++ A+I +  D  
Sbjct: 234 QDGKALQCGTSHFLGQNFAKAFNVQFVDKNNKLDYVWATSWGV-STRLMGALIMTHSDDN 292

Query: 337 GIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ ++ I  +D+         E I  +L  +G  V +D+   ++ G +F
Sbjct: 293 GLVLPPHLAPIQVVIVPIYKNDEMLKKIDAKVEGIVNKLKAMGISVKYDNADNKRPGFKF 352

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  +L G P+++++G + + ++ +E+  R T  +E  S + +  Y      +
Sbjct: 353 ADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETRSCDGIEEYVQQLLED 404


>gi|288918333|ref|ZP_06412686.1| prolyl-tRNA synthetase [Frankia sp. EUN1f]
 gi|288350228|gb|EFC84452.1| prolyl-tRNA synthetase [Frankia sp. EUN1f]
          Length = 471

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 61/403 (15%), Positives = 119/403 (29%), Gaps = 59/403 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + + A I       GA+    P       L  E+   + +  E+  +     K
Sbjct: 41  PYGYALWERMQADIDARIKAAGAVNAYFPLFIPESYLRREAEHVEGFSPELAVVTHGGGK 100

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 101 ELAEPVVVRP-------------------------------------------------- 110

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +         K   SY  +   L   +  +R E  P     + EF+     G T   
Sbjct: 111 --TSETVIGEYMAKWTQSYRDLPLLLNQWANVVRWELRPRLFLRTSEFL--WQEGHTAHA 166

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              D   +        + D +     +  +                 +  E      + +
Sbjct: 167 DEADAAAYARRIALDVYRDFMVSKLALPVFVGAKTRKERFAGATNTMTC-EGMMGDGKAL 225

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++      G  ++      F GADG  H     S+G  + R++  +I +  D  G+  P 
Sbjct: 226 QMATSHELGQNFARAFDIDFLGADGGRHLAWTTSWGS-STRMIGGLIMAHGDDNGLRIPP 284

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFP 401
           ++AP ++ ++ ++  D+       +I   L+  G  V  D   G   G +   A+L G P
Sbjct: 285 ALAPTQVIVLPVRD-DEAVVAKAREITDALTAAGVRVSLDARPGLSFGRRVTDAELKGIP 343

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++V +G + ++   V +  R TG +  + L +V         +
Sbjct: 344 VRVEIGPRDLAAGNVTVARRDTGEKHPVPLTDVAARVPALLDD 386


>gi|240144358|ref|ZP_04742959.1| proline--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257203608|gb|EEV01893.1| proline--tRNA ligase [Roseburia intestinalis L1-82]
 gi|291540831|emb|CBL13942.1| prolyl-tRNA synthetase, family I [Roseburia intestinalis XB6B4]
          Length = 479

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 138/412 (33%), Gaps = 69/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMILRPAGYAIWENIQHELDRRFKETGVENVYLPLFIPESLLEKEKDHVEGFAPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                ++  + +   PT E +  D +++ I+SYR+LP  + Q     R E   R      
Sbjct: 99  TYGGLNQLPERLCVRPTSETLFCDFYKNIIQSYRDLPKVYNQWCSVVRWEKETRPF---- 154

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
                                                         S        H    
Sbjct: 155 --------------------------------------------LRSREFLWQEGHTAHA 170

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+  E +       +      E      +    +  E++    A  +            
Sbjct: 171 TAEEAEQRTV-QMLNVYADFCEEVLAMPVVRGQKTEKEKFAGAEATYT-----------I 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G    FG  ++      +   D K  YV   S+G+   R++ A+I   
Sbjct: 219 EALMHDGKALQSGTSHNFGNGFAKAFGIQYTDKDNKLQYVYQTSWGM-TTRLIGAIIMVH 277

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  +AP +  +I I+       D  +++  R+ KV C    DD  +  G +F
Sbjct: 278 GDDSGLVLPPRIAPVQAMVIPIQQQKDGVLDTAKEVCERIGKV-CRAKLDDSDKSPGWKF 336

Query: 393 AVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRFS 443
           +  ++ G P+++ +G K ++  K V ++ R T  + +++L+E+         
Sbjct: 337 SEQEMRGIPVRIELGPKDIAAGKCVAVR-RDTREKIEIALDELEAKLPELLE 387


>gi|302678395|ref|XP_003028880.1| hypothetical protein SCHCODRAFT_236922 [Schizophyllum commune H4-8]
 gi|300102569|gb|EFI93977.1| hypothetical protein SCHCODRAFT_236922 [Schizophyllum commune H4-8]
          Length = 706

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 68/438 (15%), Positives = 127/438 (28%), Gaps = 79/438 (18%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ES 83
           +L+  M+  +S  G Y   P      + +     +E  + G      P   S  +   E 
Sbjct: 220 LLKADMLDYYSVSGCYILKPWSYSIWEEIQDWFNKEIKKLGVQNSYFPMFVSQSVLEREK 279

Query: 84  GRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +       +       PT E  M   +   I+S+R+LP    Q     
Sbjct: 280 DHVEGFSPEVAWVTRAGQSDLQEPIAIRPTSETAMYPYYSKWIQSHRDLPLKLNQWNSVV 339

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R                             +   + +      +  H   L      AE 
Sbjct: 340 RW-------------------------EFKNPQPFLRTREFLWQEGHTAFLTKPEADAEV 374

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAA 258
             I                      + + D            I  + S  E++    Y  
Sbjct: 375 RQILD-----------------LYRQIYEDLLA------VPVIPGIKSEKEKFAGGLYTT 411

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS--LPMSATFKGADGKDHYVQMGS 316
           T +                S RGI+       G  +S     + + +     +  + +  
Sbjct: 412 TIEGFIP-----------TSGRGIQAATSHCLGQNFSRPEMFNISVEDPSKPNEKLYVWQ 460

Query: 317 YGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH----DQV---CRDACEKI 368
              G + R +  ++    D +G++ P  VA  +  ++         D+      D CE I
Sbjct: 461 NSWGLSTRTIGVMVMVHGDNQGLVLPPRVASIQAVIVPCGIKAGASDEERKSINDKCEAI 520

Query: 369 YARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIR 426
              L   G     D       G +F   +  G PL++ +G K +     + ++ R TG +
Sbjct: 521 AQELRDGGVRAKADLRDIYTPGYKFNDWEQKGVPLRLEIGPKDLEKKSTLTVR-RDTGAK 579

Query: 427 EDMSLEEVINYASHRFSN 444
             + LE +    S     
Sbjct: 580 APLPLENIAAGVSSLLET 597


>gi|150005824|ref|YP_001300568.1| prolyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|254881996|ref|ZP_05254706.1| prolyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294776476|ref|ZP_06741951.1| proline--tRNA ligase [Bacteroides vulgatus PC510]
 gi|319640997|ref|ZP_07995704.1| prolyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
 gi|166980101|sp|A6L5I2|SYP_BACV8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|149934248|gb|ABR40946.1| prolyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|254834789|gb|EET15098.1| prolyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294449673|gb|EFG18198.1| proline--tRNA ligase [Bacteroides vulgatus PC510]
 gi|317387375|gb|EFV68247.1| prolyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
          Length = 496

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 137/412 (33%), Gaps = 48/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   + +    TG +    P L     L  E+   + + KE   +
Sbjct: 36  GCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSYLSREAEHVEGFAKECAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +       +   +    + E              
Sbjct: 96  TH-----------------------YRLKNAEDGSGVIVDPAAKLE-------------- 118

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            ++      +      +Y     SY  +       +  MR E        + EF+     
Sbjct: 119 -EELIIRPTSETIIWSTYKNWINSYRDLPILCNQWANVMRWEMRTRLFLRTAEFL--WQE 175

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++         +  + D       V       +A        L     E   
Sbjct: 176 GHTAHATREEAEAEAQKMLHV-YGDFAEKYMAVPVIKGVKSANERFAG-ALDTYTIEGLM 233

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++   +  F   + K  YV   S+G+ + R++ A+I +  D  
Sbjct: 234 QDGKALQCGTSHFLGQNFAKAFNVQFVDKNNKLDYVWATSWGV-STRLMGALIMTHSDDN 292

Query: 337 GIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ ++ I  +D+         E I  +L  +G  V +D+   ++ G +F
Sbjct: 293 GLVLPPHLAPIQVVIVPIYKNDEMLKKIDAKVEGIVNKLKAMGISVKYDNADNKRPGFKF 352

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  +L G P+++++G + + ++ +E+  R T  +E  S + +  Y      +
Sbjct: 353 ADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETRSCDGIEEYVQQLLED 404


>gi|14590578|ref|NP_142646.1| threonyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|8928366|sp|O58430|SYT_PYRHO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|3257107|dbj|BAA29790.1| 625aa long hypothetical threonyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 625

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/431 (16%), Positives = 143/431 (33%), Gaps = 46/431 (10%)

Query: 24  KLMLRTGMIHQH---SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-- 78
           KLML   ++        G   + P G+     +   + E+    GA+E+  P +   +  
Sbjct: 209 KLMLEHELVDYEPGSDPGNLRYYPKGRLIKSLLEQYVTEKVIEYGAMEVETPVMYDFEHP 268

Query: 79  -LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            L     R+ +       +    DK              I +  + SYR+LP   Y++  
Sbjct: 269 ALEKYLNRFPARQ----YIVLSGDKKYFLRFAACFGQFLISKDAVISYRHLPLRMYELTR 324

Query: 138 KF--RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               R++     G+ R R F M D ++     E +K  + K F   + +   +GL     
Sbjct: 325 YSFRREKRGELSGLRRLRAFTMPDMHTLAKDLEQAKDEFKKQFKLSMEVLKGVGLTP--- 381

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                              +  E  +  ++DF          +   II    ++E W   
Sbjct: 382 -------------------EDYEVAIRFTEDFWKEN-RDFIVELVKIIGKPVLIEMWKQR 421

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           +            D+L +   +S   I+V        + +      +   +G++ Y  + 
Sbjct: 422 FFYFILKFEFNFVDNLDKAAALSTVQIDV--------ENAERFGIKYYDENGEEKYPLIL 473

Query: 316 SYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARL 372
                    RV+ A++E             +  +   +   +    +   D    I  +L
Sbjct: 474 HCSPSGAIERVMYAILEKQAKLMQEGKKPMLPLWLSPIQVRVIPVSEEYLDYALYIAGKL 533

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                 V  DD  E++  +   A+    P  V+VG+K      + ++ R  G + +  LE
Sbjct: 534 EGARIRVDVDDEDERLNKKIRRAEKEWIPYIVVVGAKEKESGTITVRRREDGKQYETRLE 593

Query: 433 EVINYASHRFS 443
           E+I     +  
Sbjct: 594 ELIKEIKEKVE 604


>gi|291223150|ref|XP_002731575.1| PREDICTED: GH23578-like [Saccoglossus kowalevskii]
          Length = 1716

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/457 (15%), Positives = 128/457 (28%), Gaps = 78/457 (17%)

Query: 11   LQENPRD--AEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
            L+    +  AE  S +++ ++ MI  +   G Y   P      + +      +    G  
Sbjct: 1218 LEAKKNENLAEWYS-QIITKSEMIEYYDVSGCYILRPWAYSIWEVIKDFFDTKIKELGVE 1276

Query: 68   EMSVPTLQS-ADLWVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHI 122
                P   S A L  E      +  E+  +       +       PT E V+   +   +
Sbjct: 1277 NCYFPMFVSHAALEREKTHIADFAPEVAWVTKSGSSDLAEPIAVRPTSETVIYPAYAKWV 1336

Query: 123  KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            +S+R+LP    Q     R E +     +R+REFL                          
Sbjct: 1337 QSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFL-------------------------- 1370

Query: 183  RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                                     H     A+  + +V    +                
Sbjct: 1371 ---------------------WQEGHTAWANAEDAQEEVITILELYARVYEELLAIPVIR 1409

Query: 243  ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                   +     Y  T +                S R I+     + G  +S     TF
Sbjct: 1410 GRKTEKEKFAGGDYTTTVEAFISA-----------SGRAIQGATSHHLGQNFSKMFDITF 1458

Query: 303  KGADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA----- 356
            +       +  +     G   R +  +     D +G++ P  VA  +I ++         
Sbjct: 1459 EDPSQPSKHQFVYQNSWGLTTRTIGVLCMVHGDDQGLVLPPRVATIQIVIVPCGITVDMS 1518

Query: 357  --HDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD 413
                    D C++        G     D       G +F   +L G PL++ VG + +  
Sbjct: 1519 DVDKNALLDKCQEYVKLFKSTGMKCKGDYRDNYSPGWKFNHWELKGVPLRIEVGPRDMKK 1578

Query: 414  SK-VEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             + V ++ R TG +     +           N +  L
Sbjct: 1579 KQFVAVR-RDTGEKTTYPEDGAAAKIRSLLDNIQSSL 1614


>gi|254578182|ref|XP_002495077.1| ZYRO0B02794p [Zygosaccharomyces rouxii]
 gi|238937967|emb|CAR26144.1| ZYRO0B02794p [Zygosaccharomyces rouxii]
          Length = 564

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 125/227 (55%), Gaps = 3/227 (1%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSAD 78
           + +H+L    G I Q   G+  WLP+G + L+ V +I+R   N+ G A+E+S+  L    
Sbjct: 28  LPTHELFQTLGFIRQSQSGLVHWLPMGLRTLNKVESIVRHRMNQDGDALEVSLSALSPRS 87

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           LW ++ R+     E+ +L D    +    PT EE +T++   +I SYR++P T YQI  K
Sbjct: 88  LWEKTNRWSG--TELFKLKDAKKASYCLTPTCEEDITNLMNEYITSYRDMPTTVYQITRK 145

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           +RDELRPR G++R REFLMKDAYSF    E +  ++ KM   Y +IF  L +  +   A+
Sbjct: 146 YRDELRPRGGLLRGREFLMKDAYSFASNEEEALQTFQKMNAVYNKIFQDLKIPFVSAWAD 205

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
           +G IGGDLS E+  L + GE  +       D     +   F D + L
Sbjct: 206 TGDIGGDLSKEYHYLHEGGEDTLLTCDQCGDVSNVEKCESFPDEVGL 252



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 12/157 (7%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRV 324
           ++  S  E      + IEVGH F+ GTKYS  M + F  ++   +   QMG YGIG  R+
Sbjct: 364 EICGSCEEGHLRGDKSIEVGHTFHLGTKYSEAMGSKFTDSNNNSNSIPQMGCYGIGISRL 423

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY--ARLSKVGCDVFWD 382
           V A+ E + D KG  WP SV+P+ +S+     ++Q+ ++  + I     LS+        
Sbjct: 424 VGAIAEVARDSKGFKWPTSVSPYLMSIC--GKNEQLVQETRQTIESPDVLSQFN------ 475

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                +G++  ++  LG PL +IVG K     +VE++
Sbjct: 476 -SKLGLGARIKLSHALGIPLAIIVGPKSWPKVEVEVR 511


>gi|147835150|emb|CAN65675.1| hypothetical protein VITISV_002010 [Vitis vinifera]
          Length = 342

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 91/280 (32%), Gaps = 26/280 (9%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   +E  R D       L L +  I  +   G+  W P G      +    ++   
Sbjct: 83  KAYLHFKEEAKRRDHRRLGIDLDLFS--IQDEAGGGLVFWHPKGAIVRHIIEDSWKKIHI 140

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
             G   +  P +  ADLW  SG  D Y + M       D+     P +      I++  +
Sbjct: 141 EHGYDLLYTPHVARADLWKTSGHLDFYRENMYSQITIEDELYQLRPMNCPYHILIYKRKL 200

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            SYR+ P    ++   +R EL     G+ R R F   DA+ F L  +        +    
Sbjct: 201 HSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDE-IRGVLDLI 259

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             I  + G     +   + P                  +   + D  +    +     DD
Sbjct: 260 EEILLQFGFSKYEVNLSTRP-----------------EKAVGADDIWEKATSALRDALDD 302

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                 I E   A Y    D+   K+ D+L    + S   
Sbjct: 303 KGWSYRIDEGGGAFYGPKIDL---KIEDALGRKWQCSTIQ 339


>gi|226310645|ref|YP_002770539.1| prolyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|226093593|dbj|BAH42035.1| prolyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 488

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 59/412 (14%), Positives = 130/412 (31%), Gaps = 58/412 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   + P G +  + +   + +    TG      P L     + +               
Sbjct: 39  GCIVFKPDGFELWERIQEAMNKRFKETGHRNAYFPMLIPESFFQK--------------- 83

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
                                               + +          +      E L 
Sbjct: 84  ------------------------------------EKEHIEGFNPELPWVTEAGGEPLE 107

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           +       +     H Y++   SY  +   +   +   R E   +    + EF+     G
Sbjct: 108 EKLALRPTSETIIGHMYSQWIQSYRDLPVLINQWANVFRWEKRTMPFLRTSEFL--WQEG 165

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            T     ++     +      + +++     +  W      +          S+ E    
Sbjct: 166 HTAHATEEEARQETMQMLEI-YREVVEQELAIPVWKGQKTPSERFAGAVDTYSI-EAMMK 223

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + ++ G   Y G K++      F   D +  YV   S+G  + R++ ++I    D +G
Sbjct: 224 DGKAVQAGTSHYLGDKFARGFEIKFLDRDNQFKYVHTTSWGT-STRLIGSMIMVHGDDRG 282

Query: 338 IIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           ++ P  +AP ++ +I +      +   +A + ++  +   G  V  D   E  G +F   
Sbjct: 283 LVLPPRMAPTQVIMIPVGPMKLREKVMEAFDPLFDEIKAAGVRVRADLREETPGWKFNEW 342

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           ++ G PL++ +G + V + +V +  R TG +  +SLE +           + 
Sbjct: 343 EMRGVPLRLELGPRDVENGQVILARRDTGEKVTVSLEGIAQTVVQLLEEIQQ 394


>gi|169347325|ref|ZP_02866263.1| hypothetical protein CLOSPI_00040 [Clostridium spiroforme DSM 1552]
 gi|169293942|gb|EDS76075.1| hypothetical protein CLOSPI_00040 [Clostridium spiroforme DSM 1552]
          Length = 479

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/409 (15%), Positives = 128/409 (31%), Gaps = 59/409 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P      + +   + +    TG   + +P L    L   ES   + +  E   +
Sbjct: 38  GFIIYRPYSYAMWEAIQQYMDKRFKETGHENVYMPMLIPQSLLQKESDHVEGFAPECAIV 97

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                                    + L
Sbjct: 98  T----------------------------------------------------KGGMDNL 105

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            ++      +       Y K+  SY  +          +R E          EF+     
Sbjct: 106 EENLIIRPTSETLFCEHYAKIVNSYRDLPKLYNQWCSVVRWEKTTRPFLRGSEFLWQ--- 162

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
               +  +K+            +++       +   T            +   ++ E   
Sbjct: 163 EGHTIHATKEEAYHETLQMLKIYEETARDLLAIPMVTGRKTEREKFAGAEATYTI-EALM 221

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   YFG  ++      F   + K  YV   S+G+ + R++ A+I    D  
Sbjct: 222 HDGKALQSGTTHYFGQGFAKAFDMKFLSKENKLEYVYQTSWGV-STRLLGAIIMVHGDNN 280

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G++ P  VAP ++ +I I+   +   D   ++  RL  VG  V  D   +  G +F+ A+
Sbjct: 281 GLVLPPRVAPIQVMIIPIQQQKEGVLDKAYELEQRLKAVGIRVKVDASDKTPGWKFSDAE 340

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE-EVINYASHRFSN 444
           + G PL++ +G K +++    +  R  G++   SL+  + +        
Sbjct: 341 MRGIPLRLEIGPKDIANDVCVLAKRNDGMKAVYSLDGSLEDTIKQLLDT 389


>gi|289423700|ref|ZP_06425499.1| proline--tRNA ligase [Peptostreptococcus anaerobius 653-L]
 gi|289155950|gb|EFD04616.1| proline--tRNA ligase [Peptostreptococcus anaerobius 653-L]
          Length = 481

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/409 (14%), Positives = 129/409 (31%), Gaps = 59/409 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + +         +TG   +  P L    L   E+   + +  E+   
Sbjct: 40  GFMVIKPYGFALWEKIRDYADGLFKQTGHKNVYFPLLIPESLLNKEAEHVEGFAPEV--- 96

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                             +      + L
Sbjct: 97  -------------------------------------------------AWVTQGGNKVL 107

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +       +       Y K   SY ++       +  +R E        + EF+     
Sbjct: 108 EERLAVRPTSETIICTMYAKWLNSYRQLPFLYNQWNSVVRWEKSTRPFLRTSEFL--WQE 165

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ +D  +      +  +      +       + +          ++ E   
Sbjct: 166 GHTLHETEQEAIDETLQQLAA-YKSVAEDLMAIPVIDGRKSESEKFAGASATYTI-EAMM 223

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++     TF   +GK       S+GI + R++  +I    D +
Sbjct: 224 HDGKALQSGTSHFLGQHFTKAFDITFSDREGKLANPYHTSWGI-STRLIGGLIMVHSDNR 282

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVA 395
           G++ P  +AP ++ +I I A+     +  +K+ A L   G  V  DD      G +F  A
Sbjct: 283 GLVLPPKMAPTQVIIIPIAANKGGVMEVVDKVAADLKAKGISVEVDDRDNYSPGYKFNDA 342

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G P+++ +G K +  ++     R    + +MSL+ V++  +     
Sbjct: 343 EMKGIPVRLEIGPKDIEKNQALAFRRDELTKSEMSLDTVVDDVAALLDE 391


>gi|153806270|ref|ZP_01958938.1| hypothetical protein BACCAC_00526 [Bacteroides caccae ATCC 43185]
 gi|149130947|gb|EDM22153.1| hypothetical protein BACCAC_00526 [Bacteroides caccae ATCC 43185]
          Length = 497

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/426 (15%), Positives = 147/426 (34%), Gaps = 49/426 (11%)

Query: 25  LMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVE 82
           L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  E
Sbjct: 22  LVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSRE 81

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +   + + KE   +                          +       +   +    + E
Sbjct: 82  AEHVEGFAKECAVVTH-----------------------YRLKNAEDGSGVVVDPAAKLE 118

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                          ++      +     ++Y     SY  +       +   R E    
Sbjct: 119 ---------------EELIIRPTSETIIWNTYKNWIQSYRDLPILCNQWANVFRWEMRTR 163

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+     G T     ++  +  +   N  + +       V       +A    
Sbjct: 164 LFLRTAEFL--WQEGHTAHATREEAEEEAVRMLNV-YGEFAEKYMAVPVVKGVKSANERF 220

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L     E      + ++ G   + G  ++      F   + K  YV   S+G+ + 
Sbjct: 221 AG-ALDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-ST 278

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDV 379
           R++ A+I +  D  G++ P  +AP ++ +I I  +D+  +    K+     +L  +G  V
Sbjct: 279 RLMGALIMTHSDDNGLVLPPHLAPIQVVIIPIYKNDEQLKQIDAKVAGIVTKLKALGISV 338

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E ++ E +  Y 
Sbjct: 339 KYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETITCEGIEAYV 398

Query: 439 SHRFSN 444
            +    
Sbjct: 399 QNLLEE 404


>gi|194742728|ref|XP_001953853.1| GF17974 [Drosophila ananassae]
 gi|190626890|gb|EDV42414.1| GF17974 [Drosophila ananassae]
          Length = 1709

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 64/421 (15%), Positives = 111/421 (26%), Gaps = 73/421 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y            +      E  R G  E   P   S   L  E      +  E+  
Sbjct: 1240 SGCYILRHWSFAIWRAIKQWFDAEITRMGVKECYFPIFVSKAVLEKEKTHIADFAPEVAW 1299

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    D  +       PT E VM   +   ++SYR+LP    Q     R E +       
Sbjct: 1300 VTKSGDSDLAEPIAVRPTSETVMYPAYAKWVQSYRDLPIRLNQWNNVVRWEFKQPTPF-- 1357

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                                                           +        H   
Sbjct: 1358 ---------------------------------------------LRTREFLWQEGHTAF 1372

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               +  + +V    D                       +     Y  T +          
Sbjct: 1373 AGKEEADKEVLDILDLYALVYTHLLAIPVVKGRKTEKEKFAGGDYTTTVEAFISA----- 1427

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                  S R I+     + G  +S      ++  + +       +      R +  +I  
Sbjct: 1428 ------SGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVYQNSWGITTRTIGVMIMV 1481

Query: 332  SHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYARLSKVGCDVFWDDM 384
              D +G++ P  VA  +  ++     +   D       DAC+++  RL         D  
Sbjct: 1482 HADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKQLEKRLVGAEVRCEGDYR 1541

Query: 385  GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRF 442
                 G +F   +L G PL++ VG K +   + V ++ R TG +  + L +V        
Sbjct: 1542 DNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVR-RDTGEKITIPLADVEKKIPALL 1600

Query: 443  S 443
             
Sbjct: 1601 E 1601


>gi|156103089|ref|XP_001617237.1| bifunctional aminoacyl-tRNA synthetase [Plasmodium vivax SaI-1]
 gi|148806111|gb|EDL47510.1| bifunctional aminoacyl-tRNA synthetase, putative [Plasmodium vivax]
          Length = 765

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 141/409 (34%), Gaps = 70/409 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
            G Y   P      + V A   +E  +        P   +   L  E    + +  E+  
Sbjct: 301 SGCYILRPASYYIWECVQAFFNKEIKKLDVENSYFPLFVTKNKLEREKNHIEGFSPEVAW 360

Query: 96  LADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D    + +   PT E +M  +F   I+S+R+LP    Q     R E +     +R
Sbjct: 361 VTKYGDSTLPEEIAIRPTSETIMYSVFSKWIRSHRDLPLKLNQWNTVVRWEFKQPTPFIR 420

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++        + +   +F                                 
Sbjct: 421 TREFLWQEGHTAHKNE---EEAVKMVFDIL------------------------------ 447

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVHNEKLFDS 270
                    ++         +P        I  + S  E++    + +T++    +    
Sbjct: 448 --------DLYRRWYEECLAVPI-------IKGIKSEGEKFGGANFTSTAEAFISENG-- 490

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                    R I+     Y GT ++      F+  +    YV   S+G    R +  +I 
Sbjct: 491 ---------RAIQAATSHYLGTNFAKMFKIEFEDENETKQYVHQTSWGC-TTRSIGIMIM 540

Query: 331 SSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE- 386
           +  D KG++ P  VA FK+ ++ I      + V  + C+ I   L     +  +DD    
Sbjct: 541 THGDDKGLVLPPKVAKFKVVIVPILYKNTDENVIFNYCKDIEKVLKSAQINCIFDDRDLY 600

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             G +F   +L G P+++ VG K + ++      R T  + ++  E V+
Sbjct: 601 SPGYKFNHWELRGVPIRIEVGPKDIQNNSCLCVRRDTNEKFNVKKESVL 649


>gi|77554944|gb|ABA97740.1| Bifunctional aminoacyl-tRNA synthetase, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 489

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 127/414 (30%), Gaps = 83/414 (20%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P   +  + +      E  +        P   + + L  E    + +  E+  
Sbjct: 57  SGCYILRPWAMEIWELLKEFFDAEIKKLKLKPYYFPLFVTENVLQKEKDHIEGFAPEVAW 116

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   F   I+S+R+LP    Q     R E       +R
Sbjct: 117 VTKSGKSDLEAPIAIRPTSETVMYPYFSKWIRSHRDLPLRCNQWCNVVRWEFSNPTPFIR 176

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T E +     ++   Y                        +  EF+
Sbjct: 177 SREFLWQEGHTAFATKEEADEEVLQILELY----------------------RRIYEEFL 214

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                              S +E++      TS      +   +
Sbjct: 215 A--------------------------VPVSKGRKSEMEKFAGGLYTTS------VEAFI 242

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           P     + RG++       G  ++     TF+   G    V   S+     R +  ++ +
Sbjct: 243 PN----TGRGVQGATSHCLGQNFAKMFDITFENDKGSRSMVWQNSWAY-TTRSIGVMVMT 297

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
             D K +                        + C+K    L K G     D       G 
Sbjct: 298 HGDDKDVDTT------------------AIVNECKKTVETLEKAGIRADLDTRENYSPGW 339

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +++  ++ G PL++ +G K +++++  +  R  G + D+   +++   +     
Sbjct: 340 KYSHWEMKGVPLRIEIGPKDMANNQARVVRRDNGAKADIPTADLVEKVNGLLDE 393


>gi|45358259|ref|NP_987816.1| prolyl-tRNA synthetase [Methanococcus maripaludis S2]
 gi|74579597|sp|Q6LZD3|SYP_METMP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|44921016|emb|CAF30252.1| Prolyl-tRNA synthetase [Methanococcus maripaludis S2]
          Length = 460

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/456 (16%), Positives = 143/456 (31%), Gaps = 81/456 (17%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIR 58
           M  S+++  IL+               + G+  +    KG   +LP G K       I+R
Sbjct: 1   MEFSEWYSDILE---------------KAGIYDLRYPIKGCGVYLPYGFKIRRYSFEILR 45

Query: 59  EEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           +  + TG  E   P L   +L   E      +  E+  +       +             
Sbjct: 46  KLLDETGHDETLFPMLIPENLLAKEGEHIKGFEDEVFWVTHGGKTPLEVKLALRPTS--- 102

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
                                                    +   + +  +  K   +  
Sbjct: 103 -----------------------------------------ETTMYYMMKQWIKVHTDLP 121

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y  +                             A   E         ++  +     
Sbjct: 122 LKLYQVVNTFRYETKHTRPLIRLREIMSFKEAHTAHATKKECDA-----QIEEALTLYKA 176

Query: 238 DFDDIISLNSI--VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
            FD+I     I    +W     A   +  + ++   P+ K      +++G +   G  ++
Sbjct: 177 FFDEIGVPYVISKRPEWDKFPGADYTMAFDTIY---PDGK-----TMQIGTVHNLGQNFA 228

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI- 354
                 F+  DG+  +V    YGI + R +A++I    D KG++ P  VAP +I LI + 
Sbjct: 229 KTFELEFETPDGEKDFVYQTCYGI-SDRAIASLISVHGDEKGLVIPVDVAPIQIVLIPLL 287

Query: 355 -KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
            K  +++  D  +++   L      V  DD   + G ++   +L G PL++ +G + + +
Sbjct: 288 FKGKEEIVMDKIKELNNTLKSE-FRVHLDDRDIRPGRKYNDWELKGVPLRIELGPRDIEN 346

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
               I  R TG +  +    ++       S  +  L
Sbjct: 347 GHALIVRRDTGEKITVEYSNILEEVEKIVSMYKENL 382


>gi|310793744|gb|EFQ29205.1| prolyl-tRNA synthetase [Glomerella graminicola M1.001]
          Length = 566

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 136/280 (48%), Gaps = 5/280 (1%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
              ++R G + Q   GI+  LPLG++  D +  +I       GA  +++ T+ S DLW +
Sbjct: 2   KDKLIRAGFLRQSHSGIFHLLPLGRRVQDKLEHVIDYYMQDLGASRVALSTITSKDLWQK 61

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           SGR      E+    DR     +  PTHEE +T +    +KSY+ LP   YQI  KFRDE
Sbjct: 62  SGRLSQLEPELFSFDDRRGAKYMLSPTHEEEITTLVAKTVKSYKELPLRLYQITRKFRDE 121

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           LRPR+G++R+REF MKD Y+FD + E +  +YNK+  +Y  +F+ L L  +  RA SG +
Sbjct: 122 LRPRYGLLRTREFTMKDLYTFDASAEAALETYNKVQSAYAGVFNALKLPVLVARASSGDM 181

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           GGDLSHE+ +    GE  V       D+ + +E  +   +          T P    +  
Sbjct: 182 GGDLSHEYHLPTTIGEDTVVTCSKC-DYTVNAEVAETRAV-EHGQHSNGNTGPEGPATPP 239

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
              K++  +  ++         G +   GT  S       
Sbjct: 240 --AKVWRGISRDRLTLVNAWYPGQL-QQGTNLSEMGPCDV 276



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 13/188 (6%)

Query: 269 DSLPENKRVSAR---GIEVGHIFYFGTKYSLPMSATF--------KGADGKDHYVQMGSY 317
           D  P       R    +EVGH F+ GT+YS P+ A           G   K   +QMG +
Sbjct: 377 DGCPNCDGGVLRVQEALEVGHTFHLGTRYSEPLGAVISVPEDNGRSGTSEKTTLMQMGCH 436

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG- 376
           GIG  R++ AV+E   D KG+ WP  +AP++  +I++   D+      ++I A       
Sbjct: 437 GIGVSRLIGAVVEHLADSKGLQWPRVIAPYEAVVISVTDLDKEAVKVYDEITAYSKDFDA 496

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVI 435
            D   DD    +  +   ADL+G+P+ +++G  +       E++ R  GI+E + L  + 
Sbjct: 497 VDAVLDDRSVSLAWKLKDADLVGYPVLIVLGKVWKKQTGICEVQCRRLGIKETVPLANLH 556

Query: 436 NYASHRFS 443
              S    
Sbjct: 557 RRVSELLK 564


>gi|195108339|ref|XP_001998750.1| GI23457 [Drosophila mojavensis]
 gi|193915344|gb|EDW14211.1| GI23457 [Drosophila mojavensis]
          Length = 1709

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 64/421 (15%), Positives = 114/421 (27%), Gaps = 71/421 (16%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
             G Y            +      E  R G  E   P   S A L  E      +  E+  
Sbjct: 1238 SGCYILRHWSFAIWKAIKNWFDAEITRRGVKECYFPIFVSKAALEREKDHIADFAPEVAW 1297

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    D  +       PT E VM   +   I+SYR+LP    Q     R E +       
Sbjct: 1298 VTKSGDSDLAEPIAVRPTSETVMYPAYAKWIQSYRDLPIRLNQWNNVVRWEFKHPQPF-- 1355

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                                                           +        H   
Sbjct: 1356 ---------------------------------------------LRTREFLWQEGHTAF 1370

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               D  + +V    D                       +     Y  T +          
Sbjct: 1371 ATKDEADKEVLEILDLYAQIYTDLLAIPVVKGRKTEKEKFAGGDYTTTVEAFISA----- 1425

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                  S R I+     + G  +S      ++  + +       +      R +  +I  
Sbjct: 1426 ------SGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKTYVHQNSWGITTRTIGVMIMV 1479

Query: 332  SHDGKGIIWPDSVAPFKISLIN----IKAHDQVCRD---ACEKIYARLSKVGCDVFWDDM 384
              D +G++ P  VA  +  ++     +   D+   +   AC+++  RLS  G     D  
Sbjct: 1480 HADNQGLVLPPHVACVQAIVVPCGITVNTKDEERAELLGACKELECRLSGAGVRCEGDYR 1539

Query: 385  GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                 G +F   +L G P+++ +G K +   ++    R TG +  +++ +V         
Sbjct: 1540 DNYSPGWKFNHWELKGVPIRIELGPKDMQAKQIVAVRRDTGEKLTIAMADVEKKIPALLE 1599

Query: 444  N 444
             
Sbjct: 1600 T 1600


>gi|145507630|ref|XP_001439770.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406965|emb|CAK72373.1| unnamed protein product [Paramecium tetraurelia]
          Length = 698

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 135/419 (32%), Gaps = 73/419 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +     +            P   SA  L  E    + +  E+  
Sbjct: 232 SGCYILRPWAYFIWEQIQRYFDDLIRTEEVENTYFPMFLSAKHLNKEKEHVEGFKAEVAW 291

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +  +       PT E +M   F   ++S+R+LP    Q     R E +     +R
Sbjct: 292 VTKYGESDLNEPLAIRPTSETIMYPAFAKWVQSHRDLPLKVNQWTNIVRWEFKFPTPFIR 351

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REF                                                  L  E  
Sbjct: 352 TREF--------------------------------------------------LWQEGH 361

Query: 212 VLADTGETQVFCSKDFMDFPIP--SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               T E  V      +DF      E      I  + +  E++      T       +  
Sbjct: 362 TAHSTREEAVKQVYTILDFYEQVYGELLAVPVIKGIKTESEKFAGGDFTT------TVET 415

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
            +P+N     RG++     + G  +S      F+    +  +    S+G+   R + A+I
Sbjct: 416 IIPQNG----RGLQGATSHHLGQNFSKMFEINFEDDKKQKAFAWQTSWGL-TTRSIGAMI 470

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGE 386
               D KG++ P  +A ++I +I I   D   Q   + CE+I   L K    V  D    
Sbjct: 471 MFHGDDKGLVLPPRIAKYQIVIIPIIHKDLDEQQLNERCEQIRQLLVKQKLRVHLDSRDN 530

Query: 387 -QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              G +F   +  G P+++ +G     +++V +  R    +  + +EE+ N  +    N
Sbjct: 531 YSPGWKFNKWEQKGVPIRLEIGPGEFKNNEVRVVQRFDNKKYQIKMEEL-NQLNQILDN 588


>gi|255030614|ref|ZP_05302565.1| threonyl-tRNA synthetase [Listeria monocytogenes LO28]
          Length = 303

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/332 (15%), Positives = 117/332 (35%), Gaps = 30/332 (9%)

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
             I+++ I SYR LP    ++ +  R E+      ++    +  +     + P+  K  +
Sbjct: 1   MMIYKNDIHSYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEF 60

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            ++    L ++    +     R                  D   T+ +   D M     +
Sbjct: 61  KRVVELILEVYKDFDITDYSFRLS--------------YRDPKNTEKYFDDDAMWEKAQA 106

Query: 235 E-NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
              +  D++       E   A Y    DV   ++  ++ + + +S   ++    F    +
Sbjct: 107 MLKSAMDEMEMDYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD----FLLPER 159

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +      T+ G DG+ H   +     G +  +   +    +     +P  +AP ++ +I 
Sbjct: 160 FD----LTYIGEDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAPVQMEIIP 213

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           + A      D  + +  +L + G     DD  E++G +   A     P  +++G + V  
Sbjct: 214 VNA--DAHLDYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEA 271

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             V ++   +   E M L+  I       S  
Sbjct: 272 GSVNVRRYGSKDSETMDLDAFIAQVVAEVSKY 303


>gi|170096813|ref|XP_001879626.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645029|gb|EDR09277.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 709

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 136/444 (30%), Gaps = 83/444 (18%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ES 83
           +L+  M+  +S  G Y   P      + +      +    G      P   S  +   E 
Sbjct: 224 LLKADMLDYYSVSGCYILKPWSYSIWEEIQTWFNTQIKELGVQNSYFPMFVSQSVLEREK 283

Query: 84  GRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +    +  +       PT E  M   +   I+S+R+LP    Q     
Sbjct: 284 DHIEGFSPEVAWVTRAGNSDLEEPIAIRPTSETAMYPYYAKWIRSHRDLPLKLNQWNSVV 343

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++                             G  +   +AE 
Sbjct: 344 RWEFKNPQPFLRTREFLWQE-----------------------------GHTAFLTKAE- 373

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                         A+  +      + + D            I  + S  E++      T
Sbjct: 374 ------------ADAEVRQILDLYRQVYEDLLA------VPVIPGIKSEKEKFAGGLYTT 415

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT-FKGADGKDHYVQMGSYG 318
                  L   +P     S RGI+       G  +S P     F           +    
Sbjct: 416 ------TLEGFIP----TSGRGIQAATSHCLGQNFSRPEMFNIFVEDPVDKSKSYVWQNS 465

Query: 319 IG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYA 370
            G + R +  ++    D +G++ P  VA  ++ ++                 DACE++  
Sbjct: 466 WGLSTRTIGVMVMVHGDNQGLVLPPRVASIQVIVVPCGITAKSTDEQRAEINDACEELAK 525

Query: 371 RLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIRED 428
            L K G     D   G   G +F   +  G PL++ +G   +     + ++ R  G ++ 
Sbjct: 526 TLKKAGVRAKADLREGYTPGYKFNDWEQKGVPLRLEIGPNDLKKQQTLSVR-RDNGDKKP 584

Query: 429 MSL-------EEVINYASHRFSNN 445
           + L        + +        N 
Sbjct: 585 LPLANIGKNVADFLEVIQDNMFNR 608


>gi|223461182|gb|AAI41050.1| Glutamyl-prolyl-tRNA synthetase [Mus musculus]
          Length = 1512

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/423 (13%), Positives = 108/423 (25%), Gaps = 74/423 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
             G Y   P      +++      E  + G      P   S A L  E    + +  E+  
Sbjct: 1044 SGCYILRPWSYSIWESIKDFFDAEIKKLGVENCYFPIFVSQAALEKEKNHIEDFAPEVAW 1103

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +       
Sbjct: 1104 VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPVRLNQWCNVVRWEFKHPQ---- 1159

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                                                           +        H   
Sbjct: 1160 -------------------------------------------PFLRTREFLWQEGHSAF 1176

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               +    +V    +                       +     Y  T +          
Sbjct: 1177 ATFEEAADEVLQILELYARVYEELLAIPVVRGRKTEKEKFAGGDYTTTIEAFISA----- 1231

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIE 330
                  S R I+     + G  +S      F+                G   R +  ++ 
Sbjct: 1232 ------SGRAIQGATSHHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGLTTRTIGVMVM 1285

Query: 331  SSHDGKGIIWPDSVAPFKISLINIKAHD-------QVCRDACEKIYARLSKVGCDVFWDD 383
               D  G++ P  VA  ++ +I     +       +     C +   RL      V  D 
Sbjct: 1286 VHGDNMGLVLPPRVASVQVVVIPCGITNALSEEDREALMAKCNEYRRRLLGANIRVRVDL 1345

Query: 384  MGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHR 441
                  G +F   +L G P+++ VG + +     V ++ R TG +  ++ +E        
Sbjct: 1346 RDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVR-RDTGEKLTIAEKEAEAKLEKV 1404

Query: 442  FSN 444
              +
Sbjct: 1405 LED 1407


>gi|51102318|gb|AAT95872.1| prolyl-tRNA synthetase [Entamoeba moshkovskii]
          Length = 410

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/428 (15%), Positives = 134/428 (31%), Gaps = 69/428 (16%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESG 84
           +++G+I  +   G Y   P      +N+   I     R G      P   S A L  E  
Sbjct: 5   VQSGLIEYYDISGCYILRPPAYGIWENIQQFIDARIKRMGVENAYFPCFVSQATLKKEED 64

Query: 85  RYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E+  +       +       PT E ++   F++ I  +R+LP    Q     R
Sbjct: 65  ELNGFTPEVAWVTKSGQTDLQEPIALRPTSETIIYPAFKNWISGHRDLPMKVNQWCNVVR 124

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E    +  +R+REFL ++ ++       ++                             
Sbjct: 125 WEFSHPYPFIRTREFLWQEGHTAFSNQPEAE----------------------------- 155

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                  HE + L  +    +             E                  A Y+ T 
Sbjct: 156 ----KECHEIMELYASVYEDLLAVPVIRGKKSKGETFP--------------GAYYSLTV 197

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +                  R I+     + G  +S      F+    K       S+G+ 
Sbjct: 198 ECIVPTNG-----------RSIQAATSHHLGQTFSKLFDIEFEDESNKKQLAWQNSWGL- 245

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSKVGC 377
           + R +   + +  D KG++ P   A  ++ +I +      +        ++   L   G 
Sbjct: 246 STRSIGVTVMTHGDNKGVVIPPRAAQKQVVIITLHHKGSPNDEMDTKAVELSQLLLDNGI 305

Query: 378 DVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             F D     + G +F+  ++ G P+++ +G +     KV I  R  G + + S + ++ 
Sbjct: 306 RAFADTNDMHKPGWKFSEYEMRGIPIRIELGPRDYDGKKVVIVRRDNGAKTESSWDNLVE 365

Query: 437 YASHRFSN 444
                   
Sbjct: 366 TIKKTIDE 373


>gi|283782412|ref|YP_003373167.1| prolyl-tRNA synthetase [Pirellula staleyi DSM 6068]
 gi|283440865|gb|ADB19307.1| prolyl-tRNA synthetase [Pirellula staleyi DSM 6068]
          Length = 503

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 152/443 (34%), Gaps = 87/443 (19%)

Query: 27  LRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           +R   + + S   G     P G    +NV  ++      TG      P       L  E+
Sbjct: 22  IRAADLAEVSPVRGCMVIKPWGWSIWENVQKVLDGMFKATGHENAYFPLFIPMSFLEKEA 81

Query: 84  GRYDSYGKEMLRLADRN---------------DKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
              D + KE   +                   ++ +I  PT E ++  ++   ++SYR+L
Sbjct: 82  EHVDGFAKECAVVTHHRLEPGKDGKLVPAGPLEEPLIVRPTSETIIGSMYAKWVQSYRDL 141

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           P    Q     R ELR R  + R+ EFL ++ ++   T E ++   +KM   Y       
Sbjct: 142 PILINQWANVVRWELRTRLFL-RTTEFLWQEGHTAHATEEEAREETSKMLEVY------- 193

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                           D +  F+ +                            I    + 
Sbjct: 194 ---------------ADFAENFMAM--------------------------PVIKGEKTA 212

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E++              +     E      + ++ G   + G  ++      F+   GK
Sbjct: 213 GERFPG-----------AVQTLSIEAMMQDRKALQAGTSHFLGQNFAKAQEIKFQDQHGK 261

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDAC 365
           + +    S+G+ + R++ A+I +  D  G+I P  +AP  I L+ I  +D+         
Sbjct: 262 ECFAWTTSWGV-STRLIGALIMTHSDDDGLIIPPKLAPKHIVLLPIYRNDEERTAVLAYV 320

Query: 366 EKIYARLSKVG-----CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
           + +   L           V  DD   + G +       G PL+  +G K ++ + V +  
Sbjct: 321 KSLKVELESQKYSGESIRVMIDDRDLRGGEKNWQHVKKGVPLRAEIGPKDIAKNGVFLAR 380

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R TG +  +  E+++   + R  
Sbjct: 381 RDTGEKVGVGREDLVATIADRLD 403


>gi|82617575|ref|NP_084011.1| bifunctional aminoacyl-tRNA synthetase [Mus musculus]
          Length = 1512

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/423 (13%), Positives = 108/423 (25%), Gaps = 74/423 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
             G Y   P      +++      E  + G      P   S A L  E    + +  E+  
Sbjct: 1044 SGCYILRPWSYSIWESIKDFFDAEIKKLGVENCYFPIFVSQAALEKEKNHIEDFAPEVAW 1103

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +       
Sbjct: 1104 VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPVRLNQWCNVVRWEFKHP----- 1158

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                                                           +        H   
Sbjct: 1159 ------------------------------------------QPFLRTREFLWQEGHSAF 1176

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               +    +V    +                       +     Y  T +          
Sbjct: 1177 ATFEEAADEVLQILELYARVYEELLAIPVVRGRKTEKEKFAGGDYTTTIEAFISA----- 1231

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIE 330
                  S R I+     + G  +S      F+                G   R +  ++ 
Sbjct: 1232 ------SGRAIQGATSHHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGLTTRTIGVMVM 1285

Query: 331  SSHDGKGIIWPDSVAPFKISLINIKAHD-------QVCRDACEKIYARLSKVGCDVFWDD 383
               D  G++ P  VA  ++ +I     +       +     C +   RL      V  D 
Sbjct: 1286 VHGDNMGLVLPPRVASVQVVVIPCGITNALSEEDREALMAKCNEYRRRLLGANIRVRVDL 1345

Query: 384  MGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHR 441
                  G +F   +L G P+++ VG + +     V ++ R TG +  ++ +E        
Sbjct: 1346 RDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVR-RDTGEKLTIAEKEAEAKLEKV 1404

Query: 442  FSN 444
              +
Sbjct: 1405 LED 1407


>gi|332967802|gb|EGK06905.1| threonine--tRNA ligase [Desmospora sp. 8437]
          Length = 279

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 108/304 (35%), Gaps = 33/304 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           M  + + G+  +LP G    + + +  R+ Q   G  E+  P + +  LW +SG +D Y 
Sbjct: 1   MFSEEAPGMPFYLPKGMTIRNELESFSRKLQKEAGYQEVRTPLMMNQRLWEQSGHWDHYR 60

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGV 149
           + M      ++ A    P +      +F+  I+SYR+LP    +     R EL     G+
Sbjct: 61  ENM-YFTHVDETAFSIKPMNCPGHMLVFKHGIRSYRDLPLRLAEFGQVHRHELSGALHGM 119

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R F   DA+ F   P+  +           RI+   G     +   + P     S +
Sbjct: 120 FRVRTFTQDDAHIFVR-PDQIEAEVQAAMQLVDRIYSVFGFPY-TVELSTRPEDSMGSEQ 177

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               A+T                 +     D       I E   A Y    D H   + D
Sbjct: 178 LWNQAET-----------------ALKNVLDQSGVEYRINEGEGAFYGPKIDFH---IRD 217

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAV 328
           +L  + + +   ++    F    K+      ++ G  +G+   V +     G++     V
Sbjct: 218 ALKRSHQCATIQLD----FQMPEKFD----LSYVGEGNGRHRPVVIHRAIFGSIDRFIGV 269

Query: 329 IESS 332
           +   
Sbjct: 270 LVEH 273


>gi|145505431|ref|XP_001438682.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405854|emb|CAK71285.1| unnamed protein product [Paramecium tetraurelia]
          Length = 698

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 134/419 (31%), Gaps = 73/419 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +     +            P   SA  L  E    + +  E+  
Sbjct: 232 SGCYILRPWAYFIWEQIQRYFDDLIRTEEVENTYFPMFLSAKHLNKEKEHVEGFKAEVAW 291

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +  +       PT E +M   F   ++S+R+LP    Q     R E +     +R
Sbjct: 292 VTKYGESDLNEPLAIRPTSETIMYPAFAKWVQSHRDLPLKVNQWTNIVRWEFKFPTPFIR 351

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REF                                                  L  E  
Sbjct: 352 TREF--------------------------------------------------LWQEGH 361

Query: 212 VLADTGETQVFCSKDFMDFPIP--SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               T E  V      +DF      E      I  + +  E++      T       +  
Sbjct: 362 TAHATREEAVKQVYTILDFYEQVYGELLAVPVIKGIKTESEKFAGGDFTT------TVET 415

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
            +P+N     RG++     + G  +S      F+    +  +    S+G+   R + A+I
Sbjct: 416 IIPQNG----RGLQGATSHHLGQNFSKMFEINFEDDKKQKAFAWQTSWGL-TTRSIGAMI 470

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGE 386
               D KG++ P  +A ++I +I I   D       + CE+I   L K    V  D    
Sbjct: 471 MFHGDDKGLVLPPRIAKYQIVIIPIIHKDLDENQLNERCEQIRQILVKQKLRVHLDSRDN 530

Query: 387 -QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              G +F   +  G P+++ +G     +++V +  R    +  + LEE+ N  +    N
Sbjct: 531 YSPGWKFNKWEQKGVPVRLEIGPGEFKNNEVRVVQRFDNKKYQIKLEEL-NQLTQILDN 588


>gi|50309671|ref|XP_454847.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643982|emb|CAG99934.1| KLLA0E19801p [Kluyveromyces lactis]
          Length = 549

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 100/382 (26%), Positives = 168/382 (43%), Gaps = 20/382 (5%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           ++ +H+L+ + G + Q S G+  WLPLG K L N+  IIR   + +GA E+S+ +L    
Sbjct: 19  QLPTHELLQQLGYVKQASSGVLHWLPLGLKTLRNIEGIIRRRMDESGAHEVSLSSLSQRS 78

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           LW  +GR+ +   E+ +L D   K     PT EE +T +  S++ SY++LP   YQI  K
Sbjct: 79  LWETTGRWSN--TELFKLKDAKKKDYCLVPTCEEEITWLMNSYLTSYKDLPIIAYQITRK 136

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           +RDELRPR G++R REFLMKDAYSF L  E +  ++ ++  +Y +IF  +G+  +   A+
Sbjct: 137 YRDELRPRGGLLRGREFLMKDAYSFHLNSEDAVSTFERVNATYDKIFTDIGVPFVSAVAD 196

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           SG IGGDLS E+  + ++GE  +F      +     E      + S   + +        
Sbjct: 197 SGDIGGDLSKEYHFIHESGEDTLFRCNSC-EAVSNIEKCGSYPVESKEYLGDVSVKYALN 255

Query: 259 TSDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             +     L+       N  ++   ++           +  + A F             +
Sbjct: 256 EENDTLVCLYYPASRHLNWNLALEAVDNDLEPQTRYMTNEEVLAKFTENYDPMF-----N 310

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             I  M V      +  D     +  +          +   +      CE+    L    
Sbjct: 311 GIIRVMDVRLNSRSNFPDFPLKSYLKNNFAQLNDYSIVDVEEGEICAQCEE--GELESAK 368

Query: 377 -CDVFWDDMGEQ--IGSQFAVA 395
             +V     G    +G +++ A
Sbjct: 369 SIEV-----GHTFYLGKKYSKA 385



 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 20/214 (9%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             +  +         MD  + S +   D  +              +  DV   ++     
Sbjct: 301 FTENYDPMFNGIIRVMDVRLNSRSNFPDFPLKSYLKNNFAQLNDYSIVDVEEGEICAQCE 360

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E +  SA+ IEVGH FY G KYS  ++ATF+  D  D  ++MG YGIG  R++ A+ + +
Sbjct: 361 EGELESAKSIEVGHTFYLGKKYSKALNATFRQQDNSDVVMEMGCYGIGVSRLIGAIAQVT 420

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-------DMG 385
            D KG+ WP SV+P+K+S+            A +K   +L+K       D       D  
Sbjct: 421 RDPKGLRWPSSVSPYKVSVC-----------ASDKSVDQLNK--VKALLDYKPYTDFDAK 467

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             IG++   +  LG P+ ++VG K   + ++E++
Sbjct: 468 TSIGAKIQQSHALGIPIAIVVGPKSWPNVEIEVR 501


>gi|146302666|ref|YP_001197257.1| prolyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
 gi|259511597|sp|A5FA31|SYP_FLAJ1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|146157084|gb|ABQ07938.1| prolyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
          Length = 492

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 140/410 (34%), Gaps = 45/410 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G     P G    + + A    E +R               ++ E+G  ++Y    +  +
Sbjct: 33  GCMVIKPYGYAIWEKMQA----ELDR---------------MFKETGHQNAYFPLFVPKS 73

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        +E                         K  +EL  R           
Sbjct: 74  MFEAEEKNAEGFAKECAVVTHYRLKNDEDRPGKLMVDPNAKLEEELIVRP---------- 123

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                   +      +Y     SY  +   +   +  +R E        + EF+     G
Sbjct: 124 -------TSEAIIWSTYKGWVQSYRDLPLLINQWANVVRWEMRTRLFLRTAEFL--WQEG 174

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            T      + ++      N    D       +         T             E    
Sbjct: 175 HTAHATKDEAIEESEKMMNVYA-DFAENFMAIPVVKGFKTETERFAGADET-YCIEALMQ 232

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + ++ G   + G  ++      F  A+GK  +V   S+G+ + R++ A+I +  D +G
Sbjct: 233 DGKALQAGTSHFLGQNFAKAFDVKFANAEGKQEHVWGTSWGV-STRLMGALIMTHSDDQG 291

Query: 338 IIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFA 393
           ++ P ++AP ++ ++ I   D+       A  ++ A+L K+   V +DD   ++ G +FA
Sbjct: 292 LVLPPNLAPIQVVIVPIHKTDEQLAQITAAVNELTAKLRKLKISVKYDDRTTQKPGFKFA 351

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             +L G P+++ VG K + +   E+  R    +E ++ E+++++ +    
Sbjct: 352 EWELKGVPVRIAVGPKDLENGTFEVARRDNLSKEVVAAEKIVDHVNDLLE 401


>gi|148681120|gb|EDL13067.1| glutamyl-prolyl-tRNA synthetase [Mus musculus]
          Length = 1468

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/423 (13%), Positives = 108/423 (25%), Gaps = 74/423 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
             G Y   P      +++      E  + G      P   S A L  E    + +  E+  
Sbjct: 1000 SGCYILRPWSYSIWESIKDFFDAEIKKLGVENCYFPIFVSQAALEKEKNHIEDFAPEVAW 1059

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +       
Sbjct: 1060 VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPVRLNQWCNVVRWEFKHP----- 1114

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                                                           +        H   
Sbjct: 1115 ------------------------------------------QPFLRTREFLWQEGHSAF 1132

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               +    +V    +                       +     Y  T +          
Sbjct: 1133 ATFEEAADEVLQILELYARVYEELLAIPVVRGRKTEKEKFAGGDYTTTIEAFISA----- 1187

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIE 330
                  S R I+     + G  +S      F+                G   R +  ++ 
Sbjct: 1188 ------SGRAIQGATSHHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGLTTRTIGVMVM 1241

Query: 331  SSHDGKGIIWPDSVAPFKISLINIKAHD-------QVCRDACEKIYARLSKVGCDVFWDD 383
               D  G++ P  VA  ++ +I     +       +     C +   RL      V  D 
Sbjct: 1242 VHGDNMGLVLPPRVASVQVVVIPCGITNALSEEDREALMAKCNEYRRRLLGANIRVRVDL 1301

Query: 384  MGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHR 441
                  G +F   +L G P+++ VG + +     V ++ R TG +  ++ +E        
Sbjct: 1302 RDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVR-RDTGEKLTIAEKEAEAKLEKV 1360

Query: 442  FSN 444
              +
Sbjct: 1361 LED 1363


>gi|332019229|gb|EGI59739.1| Bifunctional aminoacyl-tRNA synthetase [Acromyrmex echinatior]
          Length = 2487

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 137/441 (31%), Gaps = 77/441 (17%)

Query: 28   RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
            ++GMI  +   G Y   P        +   I +E    G  E   P   +   L  E   
Sbjct: 2001 KSGMIEYYDVSGCYILRPWSFSIWKIIKEFIDKEITDIGVQECYFPIFVTRSVLEKEKAH 2060

Query: 86   YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
               +  E+  +    +  +       PT E +M   +   ++S   LP    Q     R 
Sbjct: 2061 IADFAPEVAWVTKYGETDLAEPIAIRPTSETIMYPAYAKWLRSDTELPLRLNQWNNVVRW 2120

Query: 142  ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            E +     +R+REFL ++                             G  +   +AE   
Sbjct: 2121 EFKDPKPFLRTREFLWQE-----------------------------GHTAFATKAE--- 2148

Query: 202  IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                            E +V    D                       +     Y  T +
Sbjct: 2149 ---------------AEAEVLMILDLYARVYEDLLAVPVIKGRKTEKEKFAGGEYTTTVE 2193

Query: 262  VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG- 320
                           ++ R I+     Y G  +S   +   +G  G++    +     G 
Sbjct: 2194 AFIP-----------INGRAIQGATSHYLGQNFSKMFNIQVEGIAGREEKTFVYQNSWGL 2242

Query: 321  AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLS 373
              R +  +I    D +G++ P +VAP +I +I             +     C+ +   L 
Sbjct: 2243 TTRTIGVMIMVHGDDRGLVLPPNVAPIQIIVIPCGIAVNMDEHTKESILKKCDWLVRHLG 2302

Query: 374  KVG-CDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            + G   V  D       G +F   +L G P+++ VG K +  ++V +  R    R  + +
Sbjct: 2303 QEGKFRVKSDCRLNRTPGWKFNHWELKGVPIRLEVGPKDLLKNQVTVVRRDNFQRTAIEI 2362

Query: 432  --EEVINYASHRFSN-NRPVL 449
              + +I   +   ++  + +L
Sbjct: 2363 YNDNIITPLTSILNDVQKQLL 2383



 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 6/119 (5%)

Query: 28   RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
            ++GMI  +   G Y   P        +   I +E    G  E   P   +   L  E   
Sbjct: 1558 KSGMIEYYDVSGCYILRPWSFSIWKIIKEFIDKEITDIGVQECYFPIFVTRSVLEKEKAH 1617

Query: 86   YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
               +  E+  +    +  +       PT E +M   +   ++S   LP    Q     +
Sbjct: 1618 IADFAPEVAWVTKYGETDLAEPIAIRPTSETIMYPAYAKWLRSDTELPLRLNQWNNVVK 1676


>gi|312091207|ref|XP_003146898.1| hypothetical protein LOAG_11329 [Loa loa]
 gi|307757937|gb|EFO17171.1| hypothetical protein LOAG_11329 [Loa loa]
          Length = 574

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/436 (16%), Positives = 133/436 (30%), Gaps = 74/436 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWV 81
           +++++  MI  +   G Y   P      + +      E  + G      P   S   L  
Sbjct: 92  QIIVKADMIEYYDVSGCYILRPWSFAIWEIIKKWFDTEIKKLGVRNCYFPIFVSQNALQR 151

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E      +  E+  +    +  +       PT E V+   +   I+SYR+LP    Q   
Sbjct: 152 EKEHIADFAPEVAWITRAGNSELSEPIAIRPTSETVIYPSYAKWIQSYRDLPLRLNQWCN 211

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E +     +R+REFL                                         
Sbjct: 212 VVRWEFKHPTPFLRTREFL----------------------------------------- 230

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                  +    F    +  E +VF   D                   +   +     + 
Sbjct: 231 -----WQEGHTAFQTKQE-AENEVFIILDLYAKVYTDLLAIPVTKGRKSEKEKFAGGDFT 284

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGS 316
            T + +             V+ RGI+     + G  +S     +F+    G   +    S
Sbjct: 285 TTVEAYVP-----------VNGRGIQGATSHHLGQNFSKMFDISFEDPESGAKTFAWQNS 333

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-------DQVCRDACEKIY 369
           +G+   R + A+I    D  G++ P  VAP ++ +I +           Q      E+I 
Sbjct: 334 WGM-TTRTIGAMIMIHSDNDGLVLPPRVAPIQVIIIPVGITSQMDKQIKQEIFIKAEEIM 392

Query: 370 ARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             L      V  D       G +F   +L G P+++ +G K +  S+V    R    +  
Sbjct: 393 RILENSRIRVDTDLRDNYSPGWKFNHWELKGVPIRLELGPKDIKKSQVTCVIRYNRQKSV 452

Query: 429 MSLEEVINYASHRFSN 444
           + ++ +    S     
Sbjct: 453 IPIDSLSARCSELLDE 468


>gi|38569901|gb|AAR24471.1| predicted threonyl-tRNA synthetase [uncultured crenarchaeote
           DeepAnt-EC39]
          Length = 616

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 70/418 (16%), Positives = 135/418 (32%), Gaps = 55/418 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   + P G+     +   + ++    G IE+  P +  +        + S      R 
Sbjct: 216 SGNMRFYPNGRLIKSQIEQYVTDKIRNYGGIEVETPIMYDS-------HHPSMESYFNRF 268

Query: 97  ------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ-IQLKFRDELRPR-FG 148
                  D   K +            +      SY+NLP+  Y+  +  FR E      G
Sbjct: 269 PARQYSIDSEGKHLFLRFAACFGQFLMASDFQLSYKNLPYKLYELTRYSFRREQSGELVG 328

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R R F M D ++F      +   + K F                       + G    
Sbjct: 329 LRRLRAFTMPDCHAFCKDMSQAIDEFRKRFD-----------------LSREVLSGLGIE 371

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E         T+ F +++                +    ++E W   +            
Sbjct: 372 ENDYEVGIRFTEDFYNEN------KDLIKQLVSKVGKPVLIEMWKEKFFYFVLKWEFNFI 425

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ--MGSYGIGAMRVVA 326
           D+L +   +S   I+V        +       TF     +  +      S      RV+ 
Sbjct: 426 DNLGKASSLSTDQIDV--------ENGKRYGITFTDEKNEQQHPIILHNSPSGAVERVIY 477

Query: 327 AVI----ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           A++        DGK   +P  +AP ++ LI +K       +    + ++L++    V  D
Sbjct: 478 ALLEKSAMQIKDGKIPQFPLWLAPIQVRLIPLK---DDFLEFASNLASKLTEQNIRVDID 534

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D  + IG +   A+       +++G K ++ S + ++ R TG    +S E+ +     
Sbjct: 535 DRNDTIGKRIRDAEKEWINYVLVIGEKEMNSSSLSVRDRTTGDVRQLSTEDFVKEIQD 592


>gi|242010725|ref|XP_002426109.1| prolyl-tRNA synthetase, putative [Pediculus humanus corporis]
 gi|212510156|gb|EEB13371.1| prolyl-tRNA synthetase, putative [Pediculus humanus corporis]
          Length = 1305

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/426 (14%), Positives = 121/426 (28%), Gaps = 71/426 (16%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y   P      + +   +  E    G +    P   S   L  E    D +  E+  
Sbjct: 836  SGCYILRPWSFALWEVIRNFLDGEIKSLGVVNCYFPIFVSKSVLEKEKNHIDDFAPEVAW 895

Query: 96   LADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    +  +       PT E VM   F   ++SYR+LP    Q     R E +       
Sbjct: 896  VTKSGESDLSEHIAIRPTSETVMYPAFSKWVQSYRDLPIKLNQWNNVVRWEFK------- 948

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                           P      +           ++     +    +             
Sbjct: 949  ------------HPQPFLRTREFLWQEGHTAFASYKDAETEVYQILDLYAR--------- 987

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                + ++      +    +  E++     +      E    + 
Sbjct: 988  --------------------VYTDLLAIPVVKGWKTKKEKFA---GSDFTTTVEAFIPAS 1024

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                    RGI+     + G  +S   +  ++  + ++      +      R +  +I  
Sbjct: 1025 G-------RGIQAATSHHLGQNFSKMFNIVYEDPETQEKKFVYQNSWGITTRSIGIMIMV 1077

Query: 332  SHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              D KG++ P   + +++ ++             +   +AC+ +       G  V  DD 
Sbjct: 1078 HADNKGLVLPPEASSYQLVIVPCGITASLKEEEKKNLLNACKNLEKDFINSGIRVKLDDR 1137

Query: 385  GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                 G +F   +L G PL+V +G   +   ++    R TG +  + L   I        
Sbjct: 1138 DNYSPGWKFNHWELKGVPLRVELGPTDLEKGQLTAVRRDTGEKIQIQLTNKIPETKKLLK 1197

Query: 444  NNRPVL 449
            N +  L
Sbjct: 1198 NIQENL 1203


>gi|170592483|ref|XP_001900994.1| probable proline-trna synthetase - fission yeast [Brugia malayi]
 gi|158591061|gb|EDP29674.1| probable proline-trna synthetase - fission yeast, putative [Brugia
           malayi]
          Length = 396

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 100/409 (24%), Positives = 174/409 (42%), Gaps = 43/409 (10%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG 107
           + +D +  +I  E N  GA ++S+P L + ++W ++GR+ ++  EM  L+D+ ++     
Sbjct: 18  RIIDKLIKVIETELNAIGAYKISMPILGAKEMWQKAGRWSAFESEMFHLSDKTNQIYCLQ 77

Query: 108 PTHEEVMT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           PTHEE++T  +           P   YQ+  KFRDE     G +RSREFLM D YSFDLT
Sbjct: 78  PTHEEMVTKLVAEQGELRQAVYPLMLYQMGPKFRDETVVGHGFLRSREFLMNDLYSFDLT 137

Query: 167 PEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
            + +  +Y+ +  +Y R    RLG+    +RA++G IGGD+SHE+ +   TG   +    
Sbjct: 138 EQNASDTYSLVSKTYQRIFHDRLGINFYIVRADAGNIGGDMSHEYHLPCKTGRDSIAYCS 197

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                          ++   + ++++   P                 +        IE+ 
Sbjct: 198 KC-------------NLGMNHDLLKRGEKP-------------CCCSKEYISIVETIEIA 231

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           H F  G  ++    A           + M  +GIG  R++AA+I+S       +      
Sbjct: 232 HTFQLGDLFTKKFGAKHDNQP-----LIMNCFGIGIGRLIAAIIDSMSPSTKALRLPYAL 286

Query: 346 PFKISLINI-KAHDQVCRDACEKIYARLSKVG---CDVFWDDM-GEQIGSQFAVADLLGF 400
                 + +         +  E I   LS++     D+F DD     IG +   A  LG 
Sbjct: 287 VPFKVAVILPNKTQSETMEFAENIIGHLSQISSVQNDIFVDDRLDNSIGRRLLTAANLGI 346

Query: 401 PLQVIVGSKFV----SDSKVEIKHRLTGIREDMSLEEVI-NYASHRFSN 444
           P   +VG++      ++  VE         E +S+ ++  +  S   + 
Sbjct: 347 PHIFVVGNRTARTLNNNPVVEYYRTEAYSDEPISVGDLEYDEISRFIAK 395


>gi|124008543|ref|ZP_01693235.1| prolyl-tRNA synthetase [Microscilla marina ATCC 23134]
 gi|123985917|gb|EAY25774.1| prolyl-tRNA synthetase [Microscilla marina ATCC 23134]
          Length = 498

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 134/429 (31%), Gaps = 69/429 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A I      TG      P       L  E+   + + KE   +
Sbjct: 33  GCMVIKPYGFAIWEKMQAEIDRMFKATGHSNAYFPLFIPKSYLSKEADHVEGFAKECAVV 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +       +   +    + E              
Sbjct: 93  TH-----------------------YRLKNAEDGSGVVVDPDAKLEEELIVRPTS----- 124

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----- 211
                           SY K   SY  +   L   +  +R E        + EF+     
Sbjct: 125 ----------ETVIWSSYKKWIQSYRDLPILLNQWANVVRWEMRTRIFLRTSEFLWQEGH 174

Query: 212 -VLADTGETQVFCSKDFMDFPIPSENTDF-DDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              A   E +    +    +   +EN      I  + S  E++                 
Sbjct: 175 TAHATKEEAEAETIQMMNVYAEFAENFMAVPVIKGIKSESERFAG-----------ADET 223

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E      + ++ G   + G  ++      F   + K+  V   S+G+ + R++ A+I
Sbjct: 224 YCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFLNKENKEELVWGTSWGV-STRLMGALI 282

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDMG- 385
            +  D  G++ P  +AP ++ ++ I   D+          +I   L  VG  V +D+   
Sbjct: 283 MAHSDDHGLVLPPKLAPIQVVIVPIYKGDEQFAAVSAKANEIKKALEAVGVSVKYDNRDT 342

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-------TGIREDMSLEEVINYA 438
            + G +FA  ++ G P+++ +G++ + +  VE+  R           ++ ++ +EV+   
Sbjct: 343 YKPGFKFADWEMKGVPVRLALGARDLENGTVEMARRDVVDPNNRNAGKKVVNFDEVVAEV 402

Query: 439 SHRFSNNRP 447
                + + 
Sbjct: 403 QATLEDMQQ 411


>gi|254172046|ref|ZP_04878722.1| threonyl-tRNA synthetase [Thermococcus sp. AM4]
 gi|214033942|gb|EEB74768.1| threonyl-tRNA synthetase [Thermococcus sp. AM4]
          Length = 624

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 137/408 (33%), Gaps = 43/408 (10%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD---LWVESGRYDSYGKEMLRLAD 98
           + P G+     +   + E+    GA+E+  P +   +   L     R+ +       +  
Sbjct: 229 YYPKGRLIKGLLEQYVTEKVVEYGAMEVETPIMYDFEHPALEKYLNRFPARQ----YIVK 284

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ-IQLKFRDELRPR-FGVMRSREFL 156
             DK              I +  I SYR+LP   Y+  +  FR E      G+ R R F 
Sbjct: 285 SGDKKFFLRFAACFGQFLIKKDAIISYRHLPLRMYELTRYSFRREKSGELSGLRRLRAFT 344

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           M D ++     + +   + K +   + +   +GL                        D 
Sbjct: 345 MPDMHTVAKDLKQAMDEFKKQYKLSMEVLRGVGLTP----------------------DD 382

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E  +  ++DF +        +   II    ++E W   +            D+L +   
Sbjct: 383 YEVAIRFTRDFWEEN-RDFIVELAKIIGKPVLIEMWDQRFFYFILKFEFNFVDNLDKAAA 441

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG--AMRVVAAVIESSHD 334
           +S   I+V        + +     T+   +GK+ Y  +          RV+ A++E    
Sbjct: 442 LSTVQIDV--------ENAERFGITYYDEEGKERYPLILHCSPSGAIERVMYAILEKQAK 493

Query: 335 GKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            +      +   +   +   +        D    +  +L      V  DD  +++  +  
Sbjct: 494 LQAQGKKPAFPLWLSPIQVRVIPVSDDVMDYALYVAGKLEGAKIRVDVDDTNDRLNKKIR 553

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            A+    P  ++VG      + V ++ R  G + +M LE++I     +
Sbjct: 554 KAEKEWIPYIIVVGKNEKEQNTVTVRRREDGKQLEMQLEDLIREIRQK 601


>gi|51892640|ref|YP_075331.1| prolyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
 gi|81826140|sp|Q67PA6|SYP_SYMTH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|51856329|dbj|BAD40487.1| prolyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
          Length = 488

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 59/410 (14%), Positives = 124/410 (30%), Gaps = 60/410 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  + + A + +    TG      P L     +  E    + +       
Sbjct: 39  GCIVFKPDGYELWERIQAGLDKRFKETGHRNAYFPMLIPESFFQKEKEHVEGF------- 91

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                             +      E L
Sbjct: 92  ---------------------------------------------NPELPWVTEAGGEKL 106

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +       +     H Y +   SY  +   +   +   R E   +    + EF+     
Sbjct: 107 EERLALRPTSETIIGHMYAQWIQSYRDLPVLINQWANVFRWEKRTLPFLRTSEFL--WQE 164

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++  +  +      + D +     +  +      +          S+ E   
Sbjct: 165 GHTAHATEEEAREETMRMLEV-YRDFVETEMAIPLYVGQKTPSEKFAGAVDTYSI-EAMM 222

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   Y G  ++      F   D +  YV   S+G+ + R++ A+I    D +
Sbjct: 223 KDGKALQAGTSHYLGQNFAKGFEIKFLDRDNQLKYVHTTSWGV-STRLIGALIMVHGDDR 281

Query: 337 GIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           G+  P  +AP ++ +I +             + ++  L   G  V  D   E  G +F  
Sbjct: 282 GLALPPRLAPIQVIMIPVGPPKFRDKVMARFDPLFDALKAAGVRVKADLREETPGWKFNE 341

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++ G PL++ +G + V + +  +  R TG +  + L+E +         
Sbjct: 342 WEMRGVPLRIEIGPRDVDNKQCLMVRRDTGEKIPVPLDEAVERVQALLEE 391


>gi|229496735|ref|ZP_04390446.1| prolyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
 gi|229316281|gb|EEN82203.1| prolyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
          Length = 517

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 135/412 (32%), Gaps = 48/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A + +    TG +    P       L  E+   + + KE   +
Sbjct: 60  GCMVIKPYGYAIWEKMQAELDKRFKETGHVNAYFPLFIPKSYLSREADHVEGFAKECAVV 119

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +   +   +   +  + + E              
Sbjct: 120 TH-----------------------YRLKNSPDGSGVVVDPEAKLEEELIVRPTS----- 151

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                           +Y     SY  +       +  +R E        + EF+     
Sbjct: 152 ----------ETIIWSTYKNWIQSYRDLPVLCNQWANVVRWEMRTRLFLRTAEFL--WQE 199

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ +          + D       V       + T          ++ E   
Sbjct: 200 GHTAHATREEAVAEAEKMLEV-YGDFAEKVLAVPVIRGVKSETERFAGAVDTYTI-EALM 257

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++      F   +G+   V   S+G+ + R++ A+I S  D  
Sbjct: 258 QDGKALQSGTSHFLGQNFAKAFDVYFLNKEGQRELVWATSWGV-STRLMGALIMSHSDDN 316

Query: 337 GIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P S+AP ++ ++ I   ++     R+  E +   L   G  V  DD   ++ G +F
Sbjct: 317 GLVLPPSLAPIQVVIVPIYKTEEHLATIRERVEPLIKDLRARGISVKLDDNDNKKPGWKF 376

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  +L G P+++ +G++ +    VE+  R T  +E ++ E + ++      +
Sbjct: 377 AEYELKGIPVRLALGARDLEQGTVEVARRDTLTKETVAFEGIADHIESLLQS 428


>gi|330861018|emb|CBX71290.1| threonyl-tRNA synthetase [Yersinia enterocolitica W22703]
          Length = 457

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 77/211 (36%), Gaps = 5/211 (2%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 232 YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELETFVRMKLKEYQ 289

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +++Y + M       ++     P +      IF   +KSY
Sbjct: 290 YQEVKGPFMMDRVLWEKTGHWENYAEHMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 348

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +     R+E      G+MR R F   DA+ F    +      N        +
Sbjct: 349 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQVRDE-VNSCIKMVYDM 407

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           +   G + I ++  + P     S +    A+
Sbjct: 408 YSTFGFEKIVVKLSTRPEKRIGSDDLWTRAE 438


>gi|66267550|gb|AAH94679.1| Eprs protein [Mus musculus]
          Length = 1477

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/423 (13%), Positives = 108/423 (25%), Gaps = 74/423 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
             G Y   P      +++      E  + G      P   S A L  E    + +  E+  
Sbjct: 1009 SGCYILRPWSYSIWESIKDFFDAEIKKLGVENCYFPIFVSQAALEKEKNHIEDFAPEVAW 1068

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +       
Sbjct: 1069 VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPVRLNQWCNVVRWEFKHP----- 1123

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                                                           +        H   
Sbjct: 1124 ------------------------------------------QPFLRTREFLWQEGHSAF 1141

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               +    +V    +                       +     Y  T +          
Sbjct: 1142 ATFEEAADEVLQILELYARVYEELLAIPVVRGRKTEKEKFAGGDYTTTIEAFISA----- 1196

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIE 330
                  S R I+     + G  +S      F+                G   R +  ++ 
Sbjct: 1197 ------SGRAIQGATSHHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGLTTRTIGVMVM 1250

Query: 331  SSHDGKGIIWPDSVAPFKISLINIKAHD-------QVCRDACEKIYARLSKVGCDVFWDD 383
               D  G++ P  VA  ++ +I     +       +     C +   RL      V  D 
Sbjct: 1251 VHGDSMGLVLPPRVASVQVVVIPCGITNALSEEDREALMAKCNEYRRRLLGANIRVRVDL 1310

Query: 384  MGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHR 441
                  G +F   +L G P+++ VG + +     V ++ R TG +  ++ +E        
Sbjct: 1311 RDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVR-RDTGEKLTIAEKEAEAKLEKV 1369

Query: 442  FSN 444
              +
Sbjct: 1370 LED 1372


>gi|118575454|ref|YP_875197.1| threonyl-tRNA synthetase [Cenarchaeum symbiosum A]
 gi|166223332|sp|A0RU76|SYT_CENSY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118193975|gb|ABK76893.1| threonyl-tRNA synthetase [Cenarchaeum symbiosum A]
          Length = 615

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 72/430 (16%), Positives = 135/430 (31%), Gaps = 50/430 (11%)

Query: 25  LMLRTGMIHQH---SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           LM R G+         G   + P G+     +   + E     G  E+  P +       
Sbjct: 200 LMKRMGIADYEPASDAGNMKFFPNGRLIKSLIERYVTERVVEYGGYEVETPIMYD----- 254

Query: 82  ESGR-----YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ-I 135
            S       Y +         D   K++            +   +  SY+NLPF  Y+  
Sbjct: 255 -SNHPSMVSYFNRFPARQYSIDSEGKSLFLRFAACFGQFLMAGDYQLSYKNLPFRLYELT 313

Query: 136 QLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +  FR E      G+ R R F M D ++F      +       F     +  +LGL    
Sbjct: 314 RYSFRREQSGELVGLRRLRAFTMPDCHAFCTDMAQAVREAGVRFELSRDVIGQLGLD--- 370

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
             A    +   L+ EF   A+ G                    +         +VE W  
Sbjct: 371 --AADYEMAIRLTEEF--YAENG----------------GAVREMVRRHGRPVLVEMWKE 410

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQ 313
            +            D   +   +S   I+V        +        F   + G+ H V 
Sbjct: 411 RFFYFVLKWEFNYIDGAGKASALSTDQIDV--------ENGKRYGIEFVDENNGRQHPVI 462

Query: 314 MGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYAR 371
           + +   G   RV+  ++E +           +  +   +   I    +       ++   
Sbjct: 463 LHNSPSGAIERVIYTLLEKAAADSARGTKPELPLWLSPVQARIIPVGEELVRNATELAKE 522

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           ++  G     DD  E +G +   A+       ++VG K  +  ++ ++ R TG   +M L
Sbjct: 523 MAGHGIRADVDDRNESMGKRIREAEKEWVRYILVVGEKEAASGRLSVRDRRTGKSTEMGL 582

Query: 432 EEVINYASHR 441
           ++++     +
Sbjct: 583 DDLVEAVREQ 592


>gi|332299347|ref|YP_004441268.1| Prolyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176410|gb|AEE12100.1| Prolyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
          Length = 494

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 133/412 (32%), Gaps = 48/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P       L  E+   + + KE   +
Sbjct: 37  GCMVIKPYGYGIWEKMQQDLDRRFKETGHSNAYFPLFIPKSYLSREAEHVEGFAKECAVV 96

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                    +++             K  +EL  R          
Sbjct: 97  TH---------------------YRLRTNEAGDGVEVDPNAKLEEELIVRP--------- 126

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +      +Y     SY  +       +  +R E        + EF+     
Sbjct: 127 --------TSETIIWSTYKNWIQSYRDLPLLCNQWANVVRWEMRTRLFLRTAEFLWQ--- 175

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E     +          +     +  +   +         + ++     +     E   
Sbjct: 176 -EGHTAHATQEEAIAEARKMIGVYEDFAREMLALPVIVGVKSETERFAGAIDTYTIEAMM 234

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++     TF   +G   YV   S+G+ + R+V A+I +  D  
Sbjct: 235 QDGKALQSGTSHFLGQNFAKAFDVTFLDKEGNRDYVWATSWGV-STRLVGALIMAHSDDN 293

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ ++ I   ++  +   +  +KI + L + G  V  DD   ++ G +F
Sbjct: 294 GLVLPPRIAPIQVVIVPIYKSEEELQRIHETADKIVSELRQHGVSVQIDDNDNKKPGWKF 353

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  ++ G P+++ +G + +    VE+  R T  +E M LE +  +      +
Sbjct: 354 AEYEMKGVPVRLALGMRDLEHGTVEVARRDTLTKETMPLEGISAHIEQLLED 405


>gi|302336805|ref|YP_003802011.1| prolyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301633990|gb|ADK79417.1| prolyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 476

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 65/416 (15%), Positives = 132/416 (31%), Gaps = 62/416 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   + +    TG      P L     +  E+   + +  E+  +
Sbjct: 33  GSMVIRPHGYALWEAIQRNLDDMFKATGHTNAYFPLLIPESFIKKEAEHVEGFSPELAVV 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                                    E L
Sbjct: 93  T----------------------------------------------------HAGGEEL 100

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +       +       Y K   SY  +   +   +  +R E        + EF+     
Sbjct: 101 EEPLVIRPTSETIIWSMYKKWIQSYRDLPLLINQWANVLRWEKRTRLFLRTSEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     K+  +  +   N  + +       +   T   + +          ++ E   
Sbjct: 159 GHTAHATEKEAREETLRMLNV-YKEFAEKWMAIPVLTGVKSPSEKFAGAIDTYAI-EAMM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++     TF+   G   YV   S+G+ + R+V A+I +  D K
Sbjct: 217 QDHKALQAGTSHFLGQNFAKAFDVTFQNDTGSLEYVWATSWGV-STRLVGALIMTHSDDK 275

Query: 337 GIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFA 393
           G++ P  ++P +  +I I    + +       K+Y R+      V  D D     G +FA
Sbjct: 276 GLVVPPKLSPVEAVIIPIFRNKNKEEVVGYARKLYDRMKDE-FRVKLDADDSNSPGWKFA 334

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             ++LG P+++ +G + + + K  +  R  G +E + +E V         + +  L
Sbjct: 335 EWEMLGCPVRIELGPRDMENGKAVLVRRDNGEKEIVDIEAVPARVGELLESIQTTL 390


>gi|153217256|ref|ZP_01951020.1| threonyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|124113711|gb|EAY32531.1| threonyl-tRNA synthetase [Vibrio cholerae 1587]
          Length = 410

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 4/179 (2%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR++ N  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHIQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +LP    +     R+E      G+MR R F   DA+ F    +  +   + + + Y   
Sbjct: 351 DLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTEDQIQQEVTSCIKMVYDTY 409


>gi|161784299|sp|Q8CGC7|SYEP_MOUSE RecName: Full=Bifunctional aminoacyl-tRNA synthetase; Includes:
            RecName: Full=Glutamyl-tRNA synthetase; AltName:
            Full=Glutamate--tRNA ligase; Short=GluRS; Includes:
            RecName: Full=Prolyl-tRNA synthetase; AltName:
            Full=Proline--tRNA ligase; Short=ProRS
          Length = 1512

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 57/423 (13%), Positives = 107/423 (25%), Gaps = 74/423 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
             G Y   P      +++      E  + G      P   S A L  E    + +  E+  
Sbjct: 1044 SGCYILRPWSYSIWESIKDFFDAEIKKLGVENCYFPIFVSQAALEKEKNHIEDFAPEVAW 1103

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+L     Q     R E +       
Sbjct: 1104 VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLAVRLNQWCNVVRWEFKHP----- 1158

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                                                           +        H   
Sbjct: 1159 ------------------------------------------QPFLRTREFLWQEGHSAF 1176

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               +    +V    +                       +     Y  T +          
Sbjct: 1177 ATFEEAADEVLQILELYARVYEELLAIPVVRGRKTEKEKFAGGDYTTTIEAFISA----- 1231

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIE 330
                  S R I+     + G  +S      F+                G   R +  ++ 
Sbjct: 1232 ------SGRAIQGATSHHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGLTTRTIGVMVM 1285

Query: 331  SSHDGKGIIWPDSVAPFKISLINIKAHD-------QVCRDACEKIYARLSKVGCDVFWDD 383
               D  G++ P  VA  ++ +I     +       +     C +   RL      V  D 
Sbjct: 1286 VHGDNMGLVLPPRVASVQVVVIPCGITNALSEEDREALMAKCNEYRRRLLGANIRVRVDL 1345

Query: 384  MGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHR 441
                  G +F   +L G P+++ VG + +     V ++ R TG +  ++ +E        
Sbjct: 1346 RDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVR-RDTGEKLTIAEKEAEAKLEKV 1404

Query: 442  FSN 444
              +
Sbjct: 1405 LED 1407


>gi|187924092|ref|YP_001895734.1| Proline--tRNA ligase [Burkholderia phytofirmans PsJN]
 gi|187715286|gb|ACD16510.1| Proline--tRNA ligase [Burkholderia phytofirmans PsJN]
          Length = 380

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 114/437 (26%), Positives = 193/437 (44%), Gaps = 64/437 (14%)

Query: 1   MRRSKYFL--PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           M+ S+ F      +++    E+    L  +  ++HQ + G+YSW+ LG +A   V +++R
Sbjct: 1   MKFSQQFFANSFFEQDNTRLELTD--LARKACLVHQDAAGLYSWMSLGLRAQRRVESVVR 58

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           EE  R G  E+ +  LQ ADLW ++GR D+YG E++RL  R+ +    G T EE+ T + 
Sbjct: 59  EEMERAGFCEIQMSLLQDADLWRQTGRLDAYGDELMRLTSRSGRLFCLGATCEELATQMV 118

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           R+H  +  ++    YQ   K+RDELR R G+ R++EF+MKD YSF+ T +G++ +Y  + 
Sbjct: 119 RTHY-NRTDMSLGLYQFGNKYRDELRTRGGLARAKEFIMKDGYSFNATEDGARAAYEAVR 177

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +YLRIF RLGL +I   +++G IGG  S EF V+++ GE +              E   
Sbjct: 178 EAYLRIFRRLGLDAIVKSSDNGEIGGQSSEEFHVVSELGEDETDGQTSL-------ECAH 230

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D+    S              +                  GI         ++ ++ +
Sbjct: 231 IFDLGDRYSKAMGLVNAKGKFVRM-------------GCFGVGI---------SRLAMLL 268

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            +  +   G       GS       VV  VI+     +           + + +++   D
Sbjct: 269 LSRQRDERGFW-----GSESFNTFDVVLTVIDWERQERQEAAETLRRELQAAGLSVLMDD 323

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                       RL++ G              + A A+L+    +V+V  K ++  + E 
Sbjct: 324 ------------RLAQAG-------------KKLADAELIACRQRVVVSGKALASGRFEW 358

Query: 419 KHRLTGIREDMSLEEVI 435
             R T  R D S  E++
Sbjct: 359 MDRRTFARRDASAAEIV 375


>gi|114600756|ref|XP_001153674.1| PREDICTED: threonyl-tRNA synthetase isoform 5 [Pan troglodytes]
          Length = 641

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 125/375 (33%), Gaps = 43/375 (11%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 306 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNALIEFIRSE 363

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F  
Sbjct: 364 YRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH 422

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R LP       +  R+EL     G+ R R F   DA+ F    +           
Sbjct: 423 RPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCLD 481

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               ++   G         + P       E                   D          
Sbjct: 482 FLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENSL 523

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++      +     A Y    D+   ++ D++    + +   ++    F    ++    +
Sbjct: 524 NEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF----N 572

Query: 300 ATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +   
Sbjct: 573 LTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP- 628

Query: 358 DQVCRDACEKIYARL 372
              C +  +K + +L
Sbjct: 629 --TCDEYAQKDFQKL 641


>gi|326499774|dbj|BAJ86198.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 541

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 140/421 (33%), Gaps = 76/421 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +  +   TG   M  P       +  E+   + +  E+  +     K
Sbjct: 98  PYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELAVVTIGGGK 157

Query: 103 AMIY----GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E ++  +F   I+SYR+LP    Q     R E+R     +R+ EFL +
Sbjct: 158 ELEEKLVVRPTSETIVNHMFTKWIQSYRDLPLMINQWANVTRWEMR-TKPFIRTLEFLWQ 216

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T E ++                                     E + + D   
Sbjct: 217 EGHTAHATLEEAEK------------------------------------EAMQMID--- 237

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                +K   +            I    S VE +                    E     
Sbjct: 238 ---VYTKFSYEQAA------IPVIPGRKSRVETFAG-----------ADRTYTIEAMMGD 277

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G     G  +S      F   +G+  +V   S+ I + R V  +I +  D  G+
Sbjct: 278 KKALQAGTSHNLGQNFSRAFETQFMDENGQLEHVWQTSWAI-STRFVGGIIMTHGDDAGL 336

Query: 339 IWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
           + P  +AP ++ ++ I           +A   +   L + G  V  D+   +  G +F  
Sbjct: 337 MLPPRIAPIQVVIVPIWKKGDEKRVVMEAVASVQNTLKEAGIRVKVDNSELRTPGWKFNF 396

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIRE-----DMSLEEVINYASHRFSNNRPV 448
            ++ G P+++ +G + V +  V +  R   G +       M    ++++   R    +  
Sbjct: 397 YEMKGVPIRIELGPRDVKNRSVVLSRRDVPGKQGKEFGISMEPSILVDHIKGRLEEIQAS 456

Query: 449 L 449
           L
Sbjct: 457 L 457


>gi|322369853|ref|ZP_08044415.1| prolyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320550189|gb|EFW91841.1| prolyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 485

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 69/416 (16%), Positives = 130/416 (31%), Gaps = 72/416 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TGA     P L     L  ES   + +  E+  +
Sbjct: 39  GFIVTRPRGYALWEGLQDHLDGWFKETGAQNAYFPALIPESYLERESDIVEGFDPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D  D+ + + PT E ++T      ++S+R+LP    Q     R E          
Sbjct: 99  THGGHDELDERLAFRPTSESIITPFMSQWVRSHRDLPLRLNQWCSVIRWEAT-------- 150

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
                                                        ++ P        +  
Sbjct: 151 ---------------------------------------------DTKPFFRTKEFLWQE 165

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFD--DIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                ET+     + M      +    +   I  +     +      A +    E L   
Sbjct: 166 GHTAHETEEEAWDETMTRLEQYQRVFEEVLAIPVMPGRKPEHDKFPGADTTTTVEALM-- 223

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            P+ K      ++     Y G  ++      F   +  +      S+G+ + R + A+I 
Sbjct: 224 -PDGK-----SVQGATSHYLGQGFAEAYDLYFTDENEDERVAHTTSWGL-SWRALGALIM 276

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQ- 387
           +  D +G + P ++AP ++ ++ I   +  +      E I   L + G  V  DD  E+ 
Sbjct: 277 THSDEQGFVCPPTLAPEQVVIVPIWQEENREEVLSYAEGIAEDLEEAGVRVELDDRDERN 336

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G +F   +L G P++  +G   V D ++ + HR  G        ++       F 
Sbjct: 337 PGFKFNEWELKGVPVRFEIGPHEVEDDEITVVHRPDGENVVEDRADIAETVEDHFD 392


>gi|228471025|ref|ZP_04055869.1| prolyl-tRNA synthetase [Porphyromonas uenonis 60-3]
 gi|313885947|ref|ZP_07819685.1| proline--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|228307245|gb|EEK16268.1| prolyl-tRNA synthetase [Porphyromonas uenonis 60-3]
 gi|312924477|gb|EFR35248.1| proline--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 494

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 133/412 (32%), Gaps = 48/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P       L  E+   + + KE   +
Sbjct: 37  GCMVIKPYGYGIWEKMQQDLDRRFKETGHSNAYFPLFIPKSYLSREAEHVEGFAKECAVV 96

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                    +++             K  +EL  R          
Sbjct: 97  TH---------------------YRLRTNEAGDGVEVDPNAKLEEELIVRP--------- 126

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +      +Y     SY  +       +  +R E        + EF+     
Sbjct: 127 --------TSETIIWSTYKNWIQSYRDLPLLCNQWANVVRWEMRTRLFLRTAEFLWQ--- 175

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E     +          +     +  +   +         + ++     +     E   
Sbjct: 176 -EGHTAHATQEEAIAEARKMIGVYEDFAREMLALPVIVGVKSETERFAGAIDTYTIEAMM 234

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++     TF   +G   YV   S+G+ + R+V A+I +  D  
Sbjct: 235 QDGKALQSGTSHFLGQNFAKAFDVTFLDKEGNRDYVWATSWGV-STRLVGALIMAHSDDN 293

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVGCDVFWDDM-GEQIGSQF 392
           G++ P  +AP ++ ++ I   ++  +   +  +KI + L + G  V  DD   ++ G +F
Sbjct: 294 GLVLPPRIAPIQVVIVPIYKSEEELQRIHETADKIVSELRQHGVSVQIDDNDNKKPGWKF 353

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  ++ G P+++ +G + +    VE+  R T  +E M LE +  +      +
Sbjct: 354 AEYEMKGVPVRLALGMRDLEHGTVEVARRDTLTKETMPLEGISAHIEQLLED 405


>gi|313243553|emb|CBY42261.1| unnamed protein product [Oikopleura dioica]
          Length = 476

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/399 (17%), Positives = 130/399 (32%), Gaps = 73/399 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRLADRNDK 102
           P      +++           G      P   S A L  E    + +  E+  +    D 
Sbjct: 1   PPSYNIWEHIKDFFDMNIKDLGVENCYFPMFVSQAALEKEKEHIEDFAPEVAWVTRSGDT 60

Query: 103 AMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E VM  I+    +S+R+LP    Q     R E +     +R+REFL +
Sbjct: 61  ELAEPIAIRPTSETVMYPIYAKRCQSHRDLPIKMNQWCNVVRWEFKHPTPFLRTREFLWQ 120

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + +S   T   ++    ++   Y +++  L   +                          
Sbjct: 121 EGHSAFATKAEAEVEVMQILDLYRKVYEDLLAIAT------------------------- 155

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                        +P   T  +               Y  T + + +            +
Sbjct: 156 -------------VPGRKTVKEKFA---------GGDYTTTVEAYIKA-----------A 182

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGA---DGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            R I+     + G  +S   + +F+      G   +    S+GI   R +  +I    D 
Sbjct: 183 GRAIQGATSHHLGQNFSKMFNISFEDESKGKGIKEFAYQNSWGI-TTRTIGVMIMVHADD 241

Query: 336 KGIIWPDSVAPFKISLINIKA-----HDQVCRDACEKIYARLSKVGCDVFWDDMGEQ-IG 389
           KG++ P  V+ ++  ++   A           +AC+ +  +L   G     D   ++  G
Sbjct: 242 KGLVIPPKVSRYQAVIVPCGATKTDEDKNKLFNACKALENQLKSFGIRAHADLRDDKKPG 301

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            +F   +L G PL++ VG K +  +      R T  +  
Sbjct: 302 WKFNDWELKGVPLRIEVGPKDLEANSAVFVRRDTLEKVT 340


>gi|156120825|ref|NP_001095559.1| probable threonyl-tRNA synthetase 2, cytoplasmic [Bos taurus]
 gi|189083595|sp|A6QNM8|SYTC2_BOVIN RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           AltName: Full=Threonyl-tRNA synthetase-like protein 2
 gi|151556799|gb|AAI48907.1| TARSL2 protein [Bos taurus]
 gi|296475416|gb|DAA17531.1| threonyl-tRNA synthetase-like 2 [Bos taurus]
          Length = 724

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 108/348 (31%), Gaps = 32/348 (9%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H  S G   +LP G    + +   IRE+ ++    E+ 
Sbjct: 393 EEARARDHRTIGKEQELF--FFHDLSPGSCFFLPRGACIYNTLIDFIREQHHQRNFTEVL 450

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + S  LW  SG +  Y + M    D +       P +      +F    +S+R +P 
Sbjct: 451 SPNMYSCKLWEASGHWQHYSENMFTF-DIDKDTFALKPMNCPGHCLMFAHRPRSWREMPI 509

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+E      G+   R F   DA+ F  T    +            ++   G
Sbjct: 510 RLADFGVLHRNEPSGALSGLTCVRRFQQDDAHIFC-TVGQLEEEIKGCLQFLQSVYSTFG 568

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                               F +   T         +  D           +      I 
Sbjct: 569 FS------------------FQLNLSTRPENFLGKIELWDEAEKQLQNSLMEFGKPWKIN 610

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+   ++ D+L    + +   ++    F    +++L   +     D K 
Sbjct: 611 PGEGAFYGPKIDL---EIKDALGRYHQCATIQLD----FQLPIRFNLTYVSK--DGDDKK 661

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           + V +    +G++  + A++  ++ GK   W        I +      
Sbjct: 662 NPVIIHQAILGSVERMIAILSENYGGKWPFWLSPRQVMVIPVGPTCEK 709


>gi|189205755|ref|XP_001939212.1| prolyl-tRNA synthetase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187975305|gb|EDU41931.1| prolyl-tRNA synthetase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 562

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 74/430 (17%), Positives = 133/430 (30%), Gaps = 82/430 (19%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      +N+      +           P   SAD L  E    + +  E+  
Sbjct: 78  AGCYILEPASYAIWENIQKWFDAKIKTLKVRNAYFPIFISADNLEREKEHVEGFAAEVAW 137

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E  M   F   I+S+R+LP    Q     R E +     +R
Sbjct: 138 VTKGGKSDLEKPIAVRPTSETAMYPYFARKIQSHRDLPLKLNQWNSVVRWEFKHPMPFIR 197

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT E +     ++   Y  +F +L                       
Sbjct: 198 TREFLWQEGHTAHLTREEASAEVLQILDWYSDVFQKL----------------------- 234

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                         +  + +I E++  A Y  T +         
Sbjct: 235 -------------------------LAVPVVKGMKTINEKFPGADYTTTVEGFIPA---- 265

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG----ADGKDHYVQMGSYGIG-AMRVV 325
                  + RG++       G  +S       +       GK  +V +     G   R +
Sbjct: 266 -------TGRGVQAATSHCLGQHFSKMFDIKVEDPTAKEAGKSEHVHVWQNSWGLTTRSI 318

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAH-------DQVCRDACEKIYARLSKVGCD 378
             +I +  D +G++ P  VA  ++ +I +           +      +KI   L + G  
Sbjct: 319 GVMILTHGDNRGLVIPPRVAEVQVVVIPVGVTAKMSAEAKEELYSKVKKIADDLIEAGVR 378

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR----EDMSLEE 433
           V  D   G   G +F   +L G PL++  G K      V    R    +      +S++ 
Sbjct: 379 VETDYREGYSPGWKFNDWELKGIPLRIEFGPKDAEKGVVTTSRRDIDDKDAARGTISVDN 438

Query: 434 VINYASHRFS 443
           ++        
Sbjct: 439 LVEEVPKLLE 448


>gi|330888315|gb|EGH20976.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 402

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 63/168 (37%), Gaps = 4/168 (2%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L      + + G+  W P G      +   +R+ Q   G
Sbjct: 231 YIQRIEEAEKRDHRKIGKRLGLF--HTQEEAPGMVFWHPQGWTLYQVLEQYMRKVQRENG 288

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P +    LW +SG + +Y   M    +   +     P +      +F   +KSY
Sbjct: 289 YLEIKTPQVVDRSLWEKSGHWANYADNMFT-TESESRDYAIKPMNCPCHVQVFNQGLKSY 347

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKH 172
           R LP    +     R+E      G+MR R F   DA+ F    +    
Sbjct: 348 RELPMRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEDQMQAE 395


>gi|11066246|gb|AAG28517.1|AF197899_1 prolyl-tRNA synthetase [Methanococcus maripaludis]
          Length = 460

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 73/456 (16%), Positives = 143/456 (31%), Gaps = 81/456 (17%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIR 58
           M  S+++  IL+               + G+  +    KG   +LP G K       I+R
Sbjct: 1   MEFSEWYSDILE---------------KAGIYDLRYPIKGCGVYLPYGFKIRRYSFEILR 45

Query: 59  EEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           +  + TG  E   P L   +L   E      +  E+  +       +             
Sbjct: 46  KLLDETGHDETLFPMLIPENLLAKEGEHIKGFEDEVFWVTHGGKTPLEVKLALRPTS--- 102

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
                                                    +   + +  +  K   +  
Sbjct: 103 -----------------------------------------ETTMYYMMKQWIKVHTDLP 121

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y  +                             A   E         ++  +     
Sbjct: 122 LKLYQVVNTFRYETKHTRPLIRLREIMSFKEAHTAHATKKECDA-----QIEEALTLYKA 176

Query: 238 DFDDIISLNSI--VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
            FD+I     I    +W     A   +  + ++   P+ K      +++G +   G  ++
Sbjct: 177 FFDEIGVPYVISKRPEWDKFPGADYTMAFDTIY---PDGK-----TMQIGTVHNLGQNFA 228

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI- 354
                 F+  DG+  +V    YGI + R +A++I    D KG++ P  VAP +I LI + 
Sbjct: 229 KTFELEFETPDGEKDFVYQTCYGI-SDRAIASLISVHGDEKGLVIPVDVAPIQIVLIPLL 287

Query: 355 -KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
            K  +++  D  +++   L      V  DD   + G ++   +L G PL++ +G + + +
Sbjct: 288 FKGKEEIVMDKIKELNKTLKSE-FRVHLDDRDIRPGRKYNDWELKGVPLRIELGPRDIEN 346

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
               I  R TG +  +    ++       S  +  L
Sbjct: 347 GHALIVRRDTGEKITVEYSNILEEVEKIVSMYKDNL 382


>gi|170578851|ref|XP_001894567.1| Bifunctional aminoacyl-tRNA synthetase  [Brugia malayi]
 gi|158598757|gb|EDP36588.1| Bifunctional aminoacyl-tRNA synthetase , putative [Brugia malayi]
          Length = 544

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 66/432 (15%), Positives = 136/432 (31%), Gaps = 74/432 (17%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           +  MI  +   G Y   P      + +     E+  + G      P   S   L  E   
Sbjct: 69  KAEMIEYYDISGCYVLRPWSYAIWEFIQEWFDEKIKKLGVKNCYFPLFVSQSALEKEKTH 128

Query: 86  YDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
              +  E+  +       +       PT E VM   +   ++S+R+LP    Q     R 
Sbjct: 129 ISDFAPEVAWITRAGQSDLAEAIAIRPTSETVMYPSYAKWVQSHRDLPIKLNQWCNVVRW 188

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +                     TP      +              G  +   +AE+  
Sbjct: 189 EFK-------------------HPTPFLRTREFLWQ----------EGHTAFQTKAEA-- 217

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                  E  V           +       I    T+ +               +  T +
Sbjct: 218 -------EDEVFKILDLYAQVYTDLLAIPVIKGRKTEKEKFA---------GGEFTTTVE 261

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIG 320
            +             ++ RGI+     + G  +S   + +F+  +G    Y    S+G+ 
Sbjct: 262 AYVP-----------INGRGIQGATSHHLGQNFSKMFNISFEDPNGGGKVYAWQNSWGL- 309

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK----AHDQ---VCRDACEKIYARLS 373
           + R + AV+    D  G++ P  +A  ++ ++ +       D+      +  +++   L 
Sbjct: 310 STRTIGAVVMIHGDNYGLVLPPRIAAIQMVIVPVGITARTKDEQKTALIEKAKEVNNILL 369

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            VG     D       G +F   +L G P+++ +G K +++S++    R +G +  + ++
Sbjct: 370 DVGIRTELDVRDNISPGWKFNHWELKGVPVRIEIGPKDLANSQITCVIRYSGEKRIIPID 429

Query: 433 EVINYASHRFSN 444
            +          
Sbjct: 430 VLATKCKDMLDE 441


>gi|320160470|ref|YP_004173694.1| prolyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
 gi|319994323|dbj|BAJ63094.1| prolyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
          Length = 478

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 69/418 (16%), Positives = 144/418 (34%), Gaps = 74/418 (17%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLA----D 98
           P G    +N+   + +    TG +  + P       L  E    + +  E+  +     +
Sbjct: 40  PYGWALWENIQQALDKRFKATGHVNAAFPLFIPMSFLEKEKEHVEGFSPELAVVTVGGGE 99

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
             ++ ++  PT E ++  ++   I+SYR+LP    Q     R E+R R  + R+ EF  +
Sbjct: 100 TLEEPLVVRPTSETIIGYMYSKWIRSYRDLPILINQWGNVVRWEMRTRLFL-RTLEFYWQ 158

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T                                      +   E + + DT  
Sbjct: 159 EGHTAHAT------------------------------------REEAIEETMRMLDT-- 180

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
              +      +  +P        I    S  E++     + +            E     
Sbjct: 181 ---YYRFAIEEAAVPV-------IPGRKSQTEKFAGAEMSMT-----------IEAMMRD 219

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G   + G  ++      F   + +  Y    S+G+ + R + A+I +  D +G+
Sbjct: 220 TKALQSGTSHFLGQNFARAFDIRFLDQNNELQYAWTTSWGL-STRFIGAIIMTHGDDQGL 278

Query: 339 IWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAV 394
           I P  +AP ++ ++ I   D          +++   L +    V  D       G +F  
Sbjct: 279 ILPPRLAPIQVVIVPIYRDDAERSLVMPVVDRLEQELREA-FRVHVDRRDGVTPGFKFND 337

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRL---TGIREDMSLEEVINYASHRFSNNRPVL 449
            ++ G PL++ VG K V  + V +  R       +  +S E +    +    +    L
Sbjct: 338 WEMRGVPLRLEVGPKDVEKNSVALARRDRPGKAGKSFVSQEGLTQTIADTLKDIHQSL 395


>gi|150025459|ref|YP_001296285.1| prolyl-tRNA synthetase [Flavobacterium psychrophilum JIP02/86]
 gi|166980123|sp|A6GZF3|SYP_FLAPJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|149772000|emb|CAL43476.1| Proline--tRNA ligase [Flavobacterium psychrophilum JIP02/86]
          Length = 492

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 65/425 (15%), Positives = 135/425 (31%), Gaps = 46/425 (10%)

Query: 24  KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           +L++R  +       G     P G    + + A +      TG      P      ++  
Sbjct: 18  ELVVRADLAENSGVRGCMVIKPYGYAIWEKMQAELDRMFKETGHSNAYFPLFVPKSMFEA 77

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
                              +        +E                         K  +E
Sbjct: 78  -------------------EEKNAEGFAKECAIVTHYRLKNDPDKPGKLMVDPNAKLEEE 118

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           L  R                   +      +Y     SY  +   +   +  +R E    
Sbjct: 119 LIVRP-----------------TSEAIIWSTYKGWIQSYRDLPLLINQWANVVRWEMRTR 161

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+     G T     K+ ++      N    D       +         T   
Sbjct: 162 LFLRTAEFL--WQEGHTAHATRKEAIEESEKMMNVYA-DFAQNFMAIPVIKGLKTETERF 218

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              +      E      + ++ G   + G  ++      F  A+GK  +V   S+G+ + 
Sbjct: 219 AGAEET-YCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFANAEGKQEHVWGTSWGV-ST 276

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDV 379
           R++ A++ +  D  G++ P ++AP ++ ++ I   D+           + ++  K+   V
Sbjct: 277 RLMGALVMTHSDDNGLVLPPNLAPIQVVIVPIFKTDEEFEKISALANDLISQFKKLNISV 336

Query: 380 FWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +D+   ++ G +FA  +L G P+++ +G K + +   EI  R T  +E    E ++ Y 
Sbjct: 337 KFDNRTTQKPGFKFAEWELKGVPVRIAIGPKDLENETFEIARRDTLTKEVKPKEGIVKYI 396

Query: 439 SHRFS 443
           S   +
Sbjct: 397 SDLLA 401


>gi|221061291|ref|XP_002262215.1| bi-functional aminoacyl-trna synthetase [Plasmodium knowlesi strain
           H]
 gi|193811365|emb|CAQ42093.1| bi-functional aminoacyl-trna synthetase,putative [Plasmodium
           knowlesi strain H]
          Length = 715

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 73/409 (17%), Positives = 140/409 (34%), Gaps = 70/409 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
            G Y   P      + +     +E  +        P   +   L  E    + +  E+  
Sbjct: 251 SGCYILRPASYYIWECLQTFFNKEIKKLDVENSYFPLFVTKNKLEKEKNHIEGFSPEVAW 310

Query: 96  LADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D    + +   PT E +M  +F   I+S+R+LP    Q     R E +     +R
Sbjct: 311 VTKYGDSTLPEEIAIRPTSETIMYSVFSKWIRSHRDLPLKLNQWNTVVRWEFKQPTPFIR 370

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++        + +   +F                                 
Sbjct: 371 TREFLWQEGHTAHKNE---EEAVKMVFDIL------------------------------ 397

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVHNEKLFDS 270
                    ++         +P        I  + S  E++    + +T++    +    
Sbjct: 398 --------DLYRRWYEECLAVPI-------IKGIKSEGEKFGGANFTSTAEAFISENG-- 440

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                    R I+     Y GT ++      F+  + K  YV   S+G    R +  +I 
Sbjct: 441 ---------RAIQAATSHYLGTNFAKMFKIEFEDENEKKQYVHQTSWGC-TTRSIGIMIM 490

Query: 331 SSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE- 386
           +  D KG++ P  VA FK+ ++ I      + V  + C+ I   L     +   DD    
Sbjct: 491 THGDDKGLVLPPKVAKFKVVIVPILYKNTDENVIFNYCKDIEKVLKNAQINCILDDRELY 550

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             G +F   +L G P+++ VG K + ++      R T  + ++  E V+
Sbjct: 551 SPGYKFNHWELRGVPIRIEVGPKDIQNNSCLFVRRDTNEKFNVKKESVL 599


>gi|78187351|ref|YP_375394.1| prolyl-tRNA synthetase [Chlorobium luteolum DSM 273]
 gi|114152226|sp|Q3B2T0|SYP_PELLD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|78167253|gb|ABB24351.1| prolyl-tRNA synthetase [Chlorobium luteolum DSM 273]
          Length = 481

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 73/419 (17%), Positives = 143/419 (34%), Gaps = 72/419 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG +    P       +  E+   + +  E   +
Sbjct: 33  GCMVIRPNGYAIWEKMQAALDRMFKETGHVNAYFPLFIPESFIAKEAEHIEGFAPECAVV 92

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E ++   ++  I+SYR+LP    Q     R E+R R  + R+
Sbjct: 93  THGGGEELAEKLYVRPTSETIIWSSYKKWIQSYRDLPILINQWANVVRWEMRTRLFL-RT 151

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   TPE S+    +M   Y                         + E++ 
Sbjct: 152 TEFLWQEGHTAHATPEESQEEVMRMINVY----------------------RTFAEEYMA 189

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +       +   K   +    +E T                                   
Sbjct: 190 M-----PVIMGRKTDSEKFAGAEETY--------------------------------CI 212

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G     G  ++      F+  D +  YV   S+G+ + R++ A+I + 
Sbjct: 213 EAMMQDGKALQAGTSHNLGQNFAKAFDCQFQTKDSRLDYVWATSWGV-STRLIGALIMAH 271

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGS 390
            D +G++ P  +A  ++ +I I   D     +  + + A L   G   F D   +   G 
Sbjct: 272 SDDRGLVLPPKLASRQVVIIPILRGDKAAVLEQADAMAASLKAAGIPAFVDGSEQNSPGW 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE----VINYASHRFSNN 445
           +FA  +L G P+++ VG + +         R T  + ++ L E     +         +
Sbjct: 332 KFAEYELQGIPVRIEVGPRDIEKGICIAARRDTLEKSELQLGETLPGAVQEILDAMQKD 390


>gi|291294868|ref|YP_003506266.1| prolyl-tRNA synthetase [Meiothermus ruber DSM 1279]
 gi|290469827|gb|ADD27246.1| prolyl-tRNA synthetase [Meiothermus ruber DSM 1279]
          Length = 477

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 62/404 (15%), Positives = 126/404 (31%), Gaps = 62/404 (15%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    +N+   +      TG      P       L  E+   + +  E+  +     +
Sbjct: 41  PYGYAIWENIQRELDRMFKETGHQNAYFPLFIPISFLQKEAEHVEGFAPELAVVTQAGGE 100

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 101 TLEEPLAVRP-------------------------------------------------- 110

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +     H + K   +Y  +   L   +  +R E        + EF+           
Sbjct: 111 --TSETIIGHMWAKWIRTYRDLPQLLNQWNSVVRWELRTKLFLRTTEFLWQ---EGHTAH 165

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            +++  +         +  ++     +  W  P   +       ++    E      + +
Sbjct: 166 ATQEEAEEEARRMAGVYATVLRDWCAIPGWEGPKTESEKFAG-AVYSISYEAMMRDGKAL 224

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           +     Y G  ++      F+  D ++ YV   S+G    RVV A++ +  D KG+I P 
Sbjct: 225 QSCTSHYLGQNFARAFDIQFQDKDQQNKYVHTTSWGF-TTRVVGALVMTHGDDKGLILPP 283

Query: 343 SVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLG 399
            +AP ++ ++ I   +  +    A E++Y  L   G  V  DD  +   G +F   +L G
Sbjct: 284 RLAPIQVVIVPIYKAETREAVLPAAERLYQELKAAGIRVHLDDRDQYSPGYKFNEWELKG 343

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            PL++ +G + V      +  RL G +E + + E++     R  
Sbjct: 344 VPLRLELGPRDVEAGTAVLASRLGG-KETLQISELLGLLPARLE 386


>gi|91217375|ref|ZP_01254335.1| prolyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
 gi|91184483|gb|EAS70866.1| prolyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
          Length = 492

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 60/416 (14%), Positives = 131/416 (31%), Gaps = 45/416 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G  +  P G    + + A +  +   TG      P      L+      +    E     
Sbjct: 33  GCMTIKPYGYAIWEKIQAELDSKFKDTGHENAYFPLFVPKSLFEA----EEKNAEGFAKE 88

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
                        +           K    L        + +                  
Sbjct: 89  CAVVTHYRLQSDPDRPGKLRVDPEAKLDEELVVRPTSEAVIWN----------------- 131

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                          ++     SY  +  ++   +  +R E        + EF+     G
Sbjct: 132 ---------------TFKGWIQSYRDLPLKINQWANVVRWEMRTRLFLRTTEFL--WQEG 174

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            T      + ++      NT + + +     +        + S+           E    
Sbjct: 175 HTAHATKTEAVEEA-ELINTLYANFVEKFMAIPVIQG-IKSESEKFAGAEETYCIEALMQ 232

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + ++ G   + G  ++   +  F    GK  YV   S+G+ + R++ A++ +  D  G
Sbjct: 233 DGKALQAGTSHFLGENFAKAFNVKFTSDQGKQEYVWATSWGV-STRLMGALVMTHSDDNG 291

Query: 338 IIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFA 393
           ++ P ++AP ++ ++ I  +++      +    I   L   G  V +D+    + G +FA
Sbjct: 292 LVLPPNLAPIQVVIVPIFKNEEQLELVSEKANLIANDLKSKGVRVKFDNRTTHKPGWKFA 351

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             +L G PL++ +G K +    VE+  R T  +   + E +     +   + +  L
Sbjct: 352 EYELKGIPLRIAIGPKDLEKGTVELARRDTLSKTFENQEGLTVVIENLLKDIQHDL 407


>gi|300176086|emb|CBK23397.2| Prolyl-tRNA synthetase [Blastocystis hominis]
          Length = 546

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 133/429 (31%), Gaps = 76/429 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
            G Y   PL     + +   +  +   +G      P   S   L  E    + +  E+  
Sbjct: 75  SGCYILRPLAYNIWERIQEFLDAKIKASGVKNAYFPMFVSRGALEKEKEHVEGFAPEVAW 134

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E +M   +   I+ +R+LP    Q     R E +     +R
Sbjct: 135 VTRSGSSELQEPVAIRPTSETIMYPAYARWIRGHRDLPLRLNQWTNVVRWEFKHPTPFIR 194

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ +S   T E ++    ++   Y R++                          
Sbjct: 195 TREFLWQEGHSAFATKEEAEKEVLEILDYYARVYE------------------------- 229

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      I    S  E++    Y  T +         
Sbjct: 230 -----------------------ELLAVPVIKGRKSEKEKFAGGLYTTTVEAFIPANG-- 264

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                    R ++       G  +S     +++   G+   V   S+G+   R +  +I 
Sbjct: 265 ---------RAVQAATSHCLGQNFSRMFGISYETDSGERKLVWQNSWGL-TTRSIGVLIM 314

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHD------QVCRDACEKIYARLSKVGCDVFWDDM 384
              D +G++ P  VAP +  ++               R A   +  RL   G  V  D  
Sbjct: 315 VHGDDRGLVLPPRVAPIQAVIVYFHNSKTSEADVDRLRRAARDLGERLRAAGLRVEVDSR 374

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI---REDMSLEEVINYASH 440
                G +FA  +  G PL++ +G + +   +V    R       +  ++ E++   A  
Sbjct: 375 ENYNPGWKFADWEQKGVPLRIELGPRDLDAQQVVFARRDDLTPAGKRTVAWEKIEEEARE 434

Query: 441 RFSNNRPVL 449
                +  L
Sbjct: 435 ALETIQAAL 443


>gi|330878004|gb|EGH12153.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 162

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 2/161 (1%)

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           GHI+  GTKYS  M     G +GK   + MG YGIG  RVVAA IE + D  GIIW D++
Sbjct: 1   GHIWQLGTKYSEAMKCQVLGENGKPVNLAMGCYGIGVSRVVAAAIEQNSDENGIIWNDTL 60

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQFAVADLLGFPL 402
           APF+I+LI ++      R+A +K+YA L+  G +V  DD  +    G +FA  +L+G P 
Sbjct: 61  APFQIALIPLRYETDAVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPH 120

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +++V  + +++  +E K R     + +++ +V+++   + +
Sbjct: 121 RIVVSDRGLAEGNLEYKSRTESQPQAIAVADVLSFIQGKVN 161


>gi|167762197|ref|ZP_02434324.1| hypothetical protein BACSTE_00549 [Bacteroides stercoris ATCC
           43183]
 gi|167699840|gb|EDS16419.1| hypothetical protein BACSTE_00549 [Bacteroides stercoris ATCC
           43183]
          Length = 497

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 65/427 (15%), Positives = 149/427 (34%), Gaps = 49/427 (11%)

Query: 24  KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  
Sbjct: 21  ELVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSR 80

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+   + + KE   +                                         + ++
Sbjct: 81  EAEHVEGFAKECAVVTHY--------------------------------------RLKN 102

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           +      V+     L ++      +     ++Y     SY  +       +   R E   
Sbjct: 103 DPNGGGVVVDPTAKLEEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVFRWEMRT 162

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                + EF+     G T     ++  +  +   N  + +       V       +A   
Sbjct: 163 RLFLRTAEFL--WQEGHTAHATREEAEEEAVRMLNV-YSEFAEKYMAVPVVKGVKSANER 219

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                L     E      + ++ G   + G  ++      F   + K  YV   S+G+ +
Sbjct: 220 FAG-ALNTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-S 277

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCD 378
            R++ A+I +  D  G++ P  +AP ++ ++ I  + ++     EK+    A+L  +G  
Sbjct: 278 TRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNAEMLAKIDEKVAGIVAKLKAMGIS 337

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V +D+   ++ G +FA  ++ G P+++++G + + ++ +E+  R T  +E  S + +  Y
Sbjct: 338 VKYDNADNKRPGFKFADYEVKGVPVRLVMGGRDLENNTMEVMRRDTLEKETRSCDGIEEY 397

Query: 438 ASHRFSN 444
                  
Sbjct: 398 VKDLLEE 404


>gi|41615004|ref|NP_963502.1| prolyl-tRNA synthetase [Nanoarchaeum equitans Kin4-M]
 gi|74580044|sp|Q74ND5|SYP_NANEQ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|40068728|gb|AAR39063.1| NEQ210 [Nanoarchaeum equitans Kin4-M]
          Length = 537

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 89/426 (20%), Positives = 160/426 (37%), Gaps = 22/426 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G+  + P G KA   + +++  +    GA     P +    ++  ES     + +E+  +
Sbjct: 30  GMPVYKPYGYKAFKFLMSLLENKLESIGAEPAWFPIVIPYSIFKKESEHIKGFEEEVFWI 89

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D+ +  +I  PT E  M  +F   I+SYR+LP   Y     +R E +    ++R 
Sbjct: 90  ERAGNDKLEDPLILRPTSETEMYYMFAKWIESYRDLPLIIYMTNTVYRYETKSTKALIRG 149

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLR-IFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           RE L  + +S   + E ++    K    Y    +  L L  I +R             + 
Sbjct: 150 REVLWNETHSVHRSEEDAREHMAKAKEVYDYIFWDVLYLPYIWVRRPEWDKFPGGEETYA 209

Query: 212 VLA--------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             A          G   +   K  + F I   +         +  +              
Sbjct: 210 ADAIMPDGRFLQVGTIHLLGQKFAIPFEIKFLDYHPFYKKYGDPNIYIKDKNGNEYKVHA 269

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            ++ ++ L + K      I++G      T  S+              YV   SYGI +MR
Sbjct: 270 PKEFWEELEKGKLTKTYTIKIGD--KEYTISSIEEINEKLKEYDFRKYVWQTSYGI-SMR 326

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWD 382
                +    D  G++ P  +AP +I +I I    D    +  +K+Y  L K    V+ D
Sbjct: 327 AFGGALYWLGDDLGLVMPYKIAPIQIVIIPILGKDDTKVIEYSKKVY-ELIKDKYRVYLD 385

Query: 383 -DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV--INYAS 439
            D  +  G ++   DL+G PL++ +G K V ++ + I  R    +  +SL E+  I+   
Sbjct: 386 SDDTKTPGYKYYYYDLIGVPLRIDIGLKEVENNSITIVRRDNKKKYTISLNELEKIDQIF 445

Query: 440 HRFSNN 445
                +
Sbjct: 446 KEMEED 451


>gi|194246824|ref|YP_002004463.1| prolyl-tRNA synthetase [Candidatus Phytoplasma mali]
 gi|193807181|emb|CAP18622.1| Prolyl-tRNA synthetase [Candidatus Phytoplasma mali]
          Length = 473

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 72/412 (17%), Positives = 149/412 (36%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   +LP G    + +     +E  +T    +  P L + +L+  E      +  E   +
Sbjct: 37  GFIIYLPDGYFLWEQIQKFFNKELQKTNHQNVYFPLLFTENLFKKEKKHIQGFQPETAFV 96

Query: 97  ADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               DK     +I  PT E + +  +   I SYR+LP  + Q     R E   R  + R 
Sbjct: 97  TFAGDKNLSEKLILRPTSEVLFSQHYEKTITSYRDLPKLYNQWCNVIRWEKSTRPFL-RG 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           +EFL ++ ++     + +      +   Y                               
Sbjct: 156 KEFLWQEGHTAHANAQEAMSETLSIIKLYQ------------------------------ 185

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                              +  E      +I   + +E++              +     
Sbjct: 186 ------------------KLGKELLAIPFVIGKKTELEKFAG-----------AIETYSI 216

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G   + GTK+S   +  F+  D K  +V   S+GI + R++ A++   
Sbjct: 217 ESLMPDGQSLQSGTSHFLGTKFSEAFNIKFQDLDNKIKFVYQTSWGI-STRLLGALVMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D +G+++P  +AP +I +I ++  D        +I+  L      V  D   +  G +F
Sbjct: 276 GDDEGLVFPPYIAPLQIIIIPLQPKDANVIKFSNEIFEVLKNK-YRVKLDVQNKNTGWKF 334

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  ++ G PL++ VG   +   ++ +  R   +++    ++++      F N
Sbjct: 335 SQYEMKGIPLRIEVGKHGLEKDEITVFTRYNFLKQQFKKDDLLTKIPFLFKN 386


>gi|227540188|ref|ZP_03970237.1| proline--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240049|gb|EEI90064.1| proline--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 490

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 67/417 (16%), Positives = 134/417 (32%), Gaps = 56/417 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + + AI+ +    TG      P       +  E+   + +  E    
Sbjct: 33  GCMVIKPYGYAIWERMQAILDKMFKDTGHSNAYFPLFIPKSFFSKEASHVEGFATE---- 88

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                               +   +                K  +EL  R          
Sbjct: 89  ------------------CAVVTHYRLKNDGAGNIIVDEDAKLEEELIVRP--------- 121

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     ++Y     SY  +   +   +  +R E        + EF+     
Sbjct: 122 --------TSETIIWNTYRGWIESYRDLPILVNQWANVVRWEMRTRLFLRTAEFL--WQE 171

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T    S++ ++                   V                 L     E   
Sbjct: 172 GHTAHATSQEAIEETEKMLGVYAY-FAENYLAVPVVRGRKTENERFAG-ALDTYCIEALM 229

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++      F   +GK  +V   S+G+ + R++ A+I +  D +
Sbjct: 230 QDGKALQAGTSHFLGQNFAKAFDVKFTSKEGKQEHVWASSWGV-STRLMGALIMAHSDDQ 288

Query: 337 GIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMG-EQIGSQF 392
           G++ P  +AP ++ ++ I   D+         + + A L      V +DD   ++ G +F
Sbjct: 289 GLVLPPMLAPIQVVIVPIYRTDEEKANIDVFVDGLNAELKAKNISVKYDDRDTQRPGFKF 348

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS-------LEEVINYASHRF 442
           A  +L G PL+V VG++ + +  VE+  R T  +E +S       +E +++      
Sbjct: 349 AEWELKGVPLRVAVGARDMQNDTVELARRDTQTKETVSQEGLSGLIEGLLDTIQENI 405


>gi|226227159|ref|YP_002761265.1| prolyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
 gi|226090350|dbj|BAH38795.1| prolyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
          Length = 489

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 65/410 (15%), Positives = 146/410 (35%), Gaps = 76/410 (18%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   + +    TG +    P       L  E+   + +  E   +
Sbjct: 35  GCMVIRPWGYGIWERMQRALDDMFKATGHVNAYFPLFIPESFLSKEAEHVEGFAPECAVV 94

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                 + ++ ++  PT E ++  +F   ++SYR+LP  + Q     R E+R R   +R+
Sbjct: 95  TMGGGKQLEERLVVRPTSETIIYSMFAKWVQSYRDLPLLYNQWANVVRWEMRTRL-FLRT 153

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T + ++    +M   Y                           E++ 
Sbjct: 154 MEFLWQEGHTAHATHDEAEEETRRMLGVY----------------------RTFMEEYMA 191

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +                            I    +  E++              L     
Sbjct: 192 M--------------------------PVITGQKTDAEKFAG-----------ALRTYCT 214

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G     G  ++     TF+   G+  +    S+G+ + R++  ++ + 
Sbjct: 215 EAMMQDNKALQAGTSHNLGQNFAKAFDLTFQNEAGQQDHAWNTSWGV-STRMIGGLVMTH 273

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSK------VGCDVFWDD 383
            D  G+  P  +AP ++ ++ I   D+      +A ++I   L            V  D+
Sbjct: 274 SDDAGLRLPPRLAPTQMVIVPIWKTDEERAATIEAAKRIAEDLGSFKRPDHERIRVHVDE 333

Query: 384 M-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             G + G+++   +L G PL++ +G + ++ S   +  R T  +  ++ +
Sbjct: 334 RVGIKPGAKYYHWELRGVPLRMEIGPRDLASSSGMLVRRDTREKRSIAFD 383


>gi|228472897|ref|ZP_04057654.1| proline--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275479|gb|EEK14256.1| proline--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
          Length = 492

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 60/429 (13%), Positives = 135/429 (31%), Gaps = 46/429 (10%)

Query: 24  KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           +L+++ G+       G     P G    + +  I+ +    TG      P       +  
Sbjct: 18  ELVVKAGLAENSGVRGCMVIKPYGYAIWEKMKDILDKMFKDTGHQNAYFPIFVPKSYFEA 77

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
               +    E                   +    +     K    L              
Sbjct: 78  ----EEKNAEGFAKECAVVTHYRLKTDPNQKGKLMVDPEAKLEEELIVRPT--------- 124

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                                  +     ++Y     SY  +   +   +  +R E    
Sbjct: 125 -----------------------SEAIIWNTYKNWIQSYRDLPLLINQWANVVRWEMRTR 161

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+     G T     ++ ++      N  +   +     V         +   
Sbjct: 162 LFLRTAEFL--WQEGHTAHATREEAVEEA-QKMNDVYATFVEKYMGVPVIRGHKTESERF 218

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                     E      + ++ G   + G  ++      F   +G   YV   S+G+ + 
Sbjct: 219 AGADDT-YCIEALMQDGKALQAGTSHFLGQNFAKAFEVKFANKEGVLDYVWASSWGV-ST 276

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI---YARLSKVGCDV 379
           R++ A+I S  D  G++ P  +AP ++ ++ I   ++  +   E+I      L +    V
Sbjct: 277 RLMGALIMSHSDDNGLVLPPLLAPIQVVIVPIYKGEEQLQAIRERITPLMKALKERNISV 336

Query: 380 FWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +DD   ++ G +F   +L G P+++ +G + + ++  E+  R T  +E +S + +I + 
Sbjct: 337 KFDDDDTQKPGFKFHEYELKGVPVRLAIGQRDLENNTYEVSRRDTLTKESVSGDNIIAHI 396

Query: 439 SHRFSNNRP 447
                + + 
Sbjct: 397 EELLKDIQE 405


>gi|154151503|ref|YP_001405121.1| prolyl-tRNA synthetase [Candidatus Methanoregula boonei 6A8]
 gi|166980134|sp|A7I9R7|SYP_METB6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|154000055|gb|ABS56478.1| prolyl-tRNA synthetase [Methanoregula boonei 6A8]
          Length = 478

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 141/412 (34%), Gaps = 69/412 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG+Y W P G      V   +RE  +R    E   P L    +   E+     + 
Sbjct: 30  VRYPVKGLYVWFPYGFAIRKFVYQHLRELLDR-DHKETLFPLLIPEQEFMKEAEHIKGFE 88

Query: 91  KEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            E+  +        +  +   PT E  +  +F   ++S+ +LP   YQI   FR E +  
Sbjct: 89  DEVYWVTHGGTTPLEVKLALRPTSETAIYPMFALWVRSHADLPIKIYQIVNTFRYETKQT 148

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
             ++R RE                                                    
Sbjct: 149 RPLIRLREITSF----------------------------------------------ME 162

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           SH      D  E QV       +  +  E      I  + S    W     A   +  + 
Sbjct: 163 SHTVHATWDEAEIQV-----ESEIALTREFYRNLCIPIIISKRPDWDKFPGADYTIAVDA 217

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           +  +         + +++G + + G  +S   +  ++  +G+        YGI + R +A
Sbjct: 218 IMPN--------GKTLQIGTVHHLGNHFSRTFNIQYEDKNGEQKEAYQTCYGI-SERCIA 268

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           A+I    D KG+I P +VA F++ ++ I      +    A  K+   L   G  V  D  
Sbjct: 269 ALISLHGDDKGLILPPTVATFQVVIVPITIGKRHEDVLAAAGKLKNDLENAGLRVTLDTR 328

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             + G+++   ++ G PL++ +G + +   K     R TG +  + L     
Sbjct: 329 DLRPGAKYYWWEIRGVPLRLELGPRDLDSGKAMAVTR-TGEKTTICLANAAE 379


>gi|225559335|gb|EEH07618.1| prolyl-tRNA synthetase [Ajellomyces capsulatus G186AR]
          Length = 606

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 68/444 (15%), Positives = 137/444 (30%), Gaps = 81/444 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + +     +   + G    S P   S D L 
Sbjct: 108 QQVLLKGQMLDYYDVSGCFILKPHSYFIWETIQNWFNDRIKKMGVKNCSFPLFVSEDVLK 167

Query: 81  VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +      + ++ +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 168 KEKDHIEGFAAEVAWVTHAGNSKLERKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWN 227

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT  G++    ++   Y  ++           
Sbjct: 228 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTEGGAREEVLQILEHYAHVY----------- 276

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAP 255
                                                 E      I    +  E++    
Sbjct: 277 -------------------------------------EELLAIPVIRGQKTEKEKFAGGL 299

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y  T + +              + RGI+ G     G  +S     T +    K    +  
Sbjct: 300 YTTTVEGYIPA-----------TGRGIQGGTSHGLGQNFSKMFGITVEDPSAKPDEKKPA 348

Query: 316 SYGIGA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRD 363
            +          R +  ++    D +G++ P  VA  +  ++ +        A       
Sbjct: 349 LHVWQNSWGLSTRTIGIMVMVHGDDRGLVIPPRVADIQTVIVPVGTGAKTTDAEKASLMA 408

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL- 422
             + + A L   G  V  D      G +F   +L G PL++  G    +   V    R  
Sbjct: 409 EIDALAAVLEAAGVRVEVDKRDYTPGWKFNDWELHGVPLRLEFGPGESAGHYVTASRRDI 468

Query: 423 -TGI-REDMSLEEVINYASHRFSN 444
                +  + + ++          
Sbjct: 469 LGKDGKSTIPITQLAVQVPALLET 492


>gi|329954822|ref|ZP_08295839.1| proline--tRNA ligase [Bacteroides clarus YIT 12056]
 gi|328526926|gb|EGF53937.1| proline--tRNA ligase [Bacteroides clarus YIT 12056]
          Length = 497

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 66/427 (15%), Positives = 149/427 (34%), Gaps = 49/427 (11%)

Query: 24  KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  
Sbjct: 21  ELVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSR 80

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+   + + KE   +                                         + ++
Sbjct: 81  EAEHVEGFAKECAVVTHY--------------------------------------RLKN 102

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           +      V+     L ++      +     ++Y     SY  +       +   R E   
Sbjct: 103 DPNGGGVVVDPAAKLEEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVFRWEMRT 162

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                + EF+     G T     ++  +  +   N  + +       V       +A   
Sbjct: 163 RLFLRTAEFL--WQEGHTAHATREEAEEEAVRMLNV-YGEFAEKYMAVPVVKGVKSANER 219

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                L     E      + ++ G   + G  ++      F   + K  YV   S+G+ +
Sbjct: 220 FAG-ALNTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-S 277

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCD 378
            R++ A+I +  D  G++ P  +AP ++ ++ I  + ++     EKI    A+L  +G  
Sbjct: 278 TRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNAEMLAKIDEKIAGIVAKLKSMGIS 337

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V +D+   ++ G +FA  ++ G P+++++G + + ++ +E+  R T  +E  S + +  Y
Sbjct: 338 VKYDNADNKRPGFKFADYEVKGVPVRLVMGGRDLENNTMEVMRRDTLEKETRSCDGIEEY 397

Query: 438 ASHRFSN 444
                  
Sbjct: 398 VKDLLEE 404


>gi|84490351|ref|YP_448583.1| threonyl-tRNA synthetase [Methanosphaera stadtmanae DSM 3091]
 gi|121731075|sp|Q2NE13|SYT_METST RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84373670|gb|ABC57940.1| ThrS [Methanosphaera stadtmanae DSM 3091]
          Length = 614

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 60/412 (14%), Positives = 132/412 (32%), Gaps = 45/412 (10%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           G I         W P G+   D ++  + +   + GA+ +  P +            + +
Sbjct: 220 GHIR--------WYPKGKLVKDLLSDYVYQLVTQRGAMPVETPVMYDLANPAIREHAEKF 271

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPRF- 147
           G+   RL  ++ + ++           I      +++N+P   Y++    FR E +    
Sbjct: 272 GERQYRLKTKH-RELMLRFACCFGAFRILADSFLTWKNMPVGIYELSTFSFRFERQGEVV 330

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R R F M D +S  L  + ++  +        +    L +        +        
Sbjct: 331 GLKRLRAFTMPDFHSVCLNDDHAREVFANQVDMCAQTETDLDVHYEVAFRVTQ------- 383

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +F    +    +V       +   P        +    +    + A             
Sbjct: 384 -DFFDENEDWIKEVV----KNNIKKPVLLEVIPKMKHYWNAKVDFAA------------- 425

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM-GSYGIGAMRVVA 326
            D L        R IE   +     + +     T+   + +  Y  +      G++  V 
Sbjct: 426 IDDLG-------RPIENPTV-QMDIQSAKRFGITYLDENEEQQYPTILHCSPTGSIERVI 477

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
             +           P        + + I        D  ++IY ++      V  DD  E
Sbjct: 478 CSLLEKTSTDKGNKPSLPLWLAPTQVRIIPVTDNHLDYAKEIYQQIRDSNIRVDIDDTAE 537

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           ++G +   A     P  ++VG   V ++ + +  R+   +E++S+E++    
Sbjct: 538 RVGKKIRNAGKEWIPYTIVVGDNEVENNSISVNRRVDNTKEEISIEDLAEEI 589


>gi|189465935|ref|ZP_03014720.1| hypothetical protein BACINT_02298 [Bacteroides intestinalis DSM
           17393]
 gi|189434199|gb|EDV03184.1| hypothetical protein BACINT_02298 [Bacteroides intestinalis DSM
           17393]
          Length = 497

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 66/427 (15%), Positives = 149/427 (34%), Gaps = 49/427 (11%)

Query: 24  KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  
Sbjct: 21  ELVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSR 80

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+   + + KE   +                          +       +   +  + + 
Sbjct: 81  EAEHVEGFAKECAVVTH-----------------------HRLKNAPDGSGVIVDPEAKL 117

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E               ++      +     ++Y     SY  +       +  MR E   
Sbjct: 118 E---------------EELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVMRWEMRT 162

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                + EF+     G T     ++  +  +   N    +       V       +A   
Sbjct: 163 RLFLRTAEFL--WQEGHTAHATREEAEEEAVRMLNVYA-EFAEKYMAVPVVKGVKSANER 219

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                L     E      + ++ G   + G  ++      F   + K  YV   S+G+ +
Sbjct: 220 FAG-ALDTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV-S 277

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCD 378
            R++ A+I +  D  G++ P  +AP ++ ++ I  + ++ +   EK+    A+L  +G  
Sbjct: 278 TRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNAEMLQKIDEKVAGIVAKLKSMGVS 337

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V +D+   ++ G +FA  +L G P+++++G + + ++ +E+  R T  +E  S + +  Y
Sbjct: 338 VKYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETRSCDGIEEY 397

Query: 438 ASHRFSN 444
                  
Sbjct: 398 VKDLLEE 404


>gi|320335305|ref|YP_004172016.1| Prolyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
 gi|319756594|gb|ADV68351.1| Prolyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
          Length = 488

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 63/417 (15%), Positives = 126/417 (30%), Gaps = 61/417 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G     P G    + +   + +E   TG   +  PTL     +  E+   + +  E+  
Sbjct: 39  AGAMVMKPYGSAIWERIQRWLDDEFKATGHESLVFPTLIPMSFITKEADHVEGFAPEL-- 96

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                           EV+ + +     S   +   + Q    +RD              
Sbjct: 97  --------FTVNKIGTEVLAEPYVMRPTSETIIGHMWSQWLNSYRD-------------- 134

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                      P       +               +       +       + E    A+
Sbjct: 135 ----------LPFLHYQWGSVFRAELRTKPFLRTSEFYWHEGHTAH-----ADEAEARAE 179

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                    +   D            +    S  E++    A               E  
Sbjct: 180 VMAMLNLYHRFCRDVLA------LPVVRGEKSASERFAGAVA-----------TYSIEGM 222

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G   Y G  +S      F+  + ++ Y    S+ I + R++ A+I +  D 
Sbjct: 223 MRDGKALQSGTSHYLGQNFSRAFDVKFQTREQREEYAHTTSWAI-SSRIIGALIMTHGDD 281

Query: 336 KGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQF 392
           KG++ P  +AP ++ +I +   D         E +   L   G  V  D       G ++
Sbjct: 282 KGLMLPPEIAPHQVVIIPVFRKDNVDQMIAEAEALAGELRAQGVRVKVDKRDGVTNGFKY 341

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
              +L G P+++ +G + +    V +K+R    +E +   E I+  + R S  +  L
Sbjct: 342 NDWELKGVPVRMELGPRDLESGVVVVKNRTGDEKETLPRHEAISGMAARLSGIQQFL 398


>gi|226291914|gb|EEH47342.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 629

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/444 (15%), Positives = 137/444 (30%), Gaps = 81/444 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + +     ++  + G    S P   S D L 
Sbjct: 108 QQVLLKGEMLDYYDVSGCFILKPHSYFIWETIQTWFNDKIKKMGVKNCSFPLFVSEDVLN 167

Query: 81  VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +      + ++ +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 168 KEKDHIEGFAAEVAWVTHAGNSKLERKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWN 227

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT   ++    ++   Y  ++           
Sbjct: 228 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTEAAAREEVLQILEHYAHVY----------- 276

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAP 255
                                                 E      I    +  E++    
Sbjct: 277 -------------------------------------EELLAVPVIRGQKTEKEKFAGGL 299

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y  T + +              + RGI+ G     G  +S     T +    K    +  
Sbjct: 300 YTTTVEGYIPA-----------TGRGIQGGTSHGLGQNFSKMFGITVEDPSAKPDEKKPA 348

Query: 316 SYGIGA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-----AHDQVCRDAC 365
            +          R +  ++    D +G++ P  VA  +  +I +         +      
Sbjct: 349 LHVWQNSWGLSTRTIGIMVMVHGDDRGLVLPPRVADVQTVIIPVGITAKTTDKERASLYA 408

Query: 366 E--KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL- 422
           E   + A +   G  V  D      G +F   +L G PL++  G    +   V    R  
Sbjct: 409 EIDALAAVIEDAGVRVEVDKRDNSPGWKFNDWELRGIPLRLEFGPGESTGHFVTTSRRDI 468

Query: 423 -TGI-REDMSLEEVINYASHRFSN 444
                +  + + E+          
Sbjct: 469 PGKDGKSTIPISELKTQVPALLET 492


>gi|157111277|ref|XP_001651466.1| bifunctional aminoacyl-tRNA synthetase [Aedes aegypti]
 gi|108878460|gb|EAT42685.1| bifunctional aminoacyl-tRNA synthetase [Aedes aegypti]
          Length = 1702

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 127/422 (30%), Gaps = 73/422 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
             G Y            + A    E  R G  E   P   S A L  E      +  E+  
Sbjct: 1232 SGCYILRHWSFAIWKAIKAWFDAEITRMGVKECYFPIFVSKAALEREKSHIADFAPEVAW 1291

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    +  +       PT E VM   +   I+SYR+LP    Q     R E +     +R
Sbjct: 1292 VTKSGESDLAEPIAVRPTSETVMYPAYAKWIQSYRDLPIRLNQWNNVVRWEFKHPQPFLR 1351

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++                             G  +  ++A+             
Sbjct: 1352 TREFLWQE-----------------------------GHTAFGVKAD------------- 1369

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                  E +V    D                       +     Y  T +          
Sbjct: 1370 -----AEQEVLDILDLYAKVYTDLLAIPVVKGRKTEKEKFAGGDYTTTVEAFISA----- 1419

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                  S R I+     + G  +S      F+  + K+      +      R +  +I  
Sbjct: 1420 ------SGRAIQGATSHFLGQNFSKMFDIVFEHPETKEKEYVYQNSWGITTRTIGVMIMV 1473

Query: 332  SHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              D +G++ P  VA  +  ++             +   ++C+++ A L K G     D  
Sbjct: 1474 HADNQGLVLPPRVACIQAIIVPCGITANTTDDERKSLYESCKELEAELVKAGVRCEGDYR 1533

Query: 385  GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRF 442
                 G ++   +L G P+++ +G K + + + V ++ R TG +  +  E+         
Sbjct: 1534 DNYSPGWKYNHWELKGVPIRIELGFKDLKNKQFVAVR-RDTGEKITVKREQAAKDIPALM 1592

Query: 443  SN 444
              
Sbjct: 1593 ET 1594


>gi|160890380|ref|ZP_02071383.1| hypothetical protein BACUNI_02821 [Bacteroides uniformis ATCC 8492]
 gi|270296935|ref|ZP_06203134.1| prolyl-tRNA synthetase [Bacteroides sp. D20]
 gi|317479089|ref|ZP_07938230.1| prolyl-tRNA synthetase [Bacteroides sp. 4_1_36]
 gi|156860112|gb|EDO53543.1| hypothetical protein BACUNI_02821 [Bacteroides uniformis ATCC 8492]
 gi|270272922|gb|EFA18785.1| prolyl-tRNA synthetase [Bacteroides sp. D20]
 gi|316904745|gb|EFV26558.1| prolyl-tRNA synthetase [Bacteroides sp. 4_1_36]
          Length = 497

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/427 (15%), Positives = 149/427 (34%), Gaps = 49/427 (11%)

Query: 24  KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  
Sbjct: 21  ELVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSR 80

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+   + + KE   +                                         + ++
Sbjct: 81  EAEHVEGFAKECAVVTHY--------------------------------------RLKN 102

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           +      V+     L ++      +     ++Y     SY  +       +   R E   
Sbjct: 103 DPNGGGVVVDPAAKLEEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVFRWEMRT 162

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                + EF+     G T     ++  +  +   N    +       V       +A   
Sbjct: 163 RLFLRTAEFL--WQEGHTAHATREEAEEEAVKMLNVYA-EFAEKYMAVPVVKGVKSANER 219

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                L     E      + ++ G   + G  ++      F   + K  YV   S+G+ +
Sbjct: 220 FAG-ALNTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-S 277

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCD 378
            R++ A+I +  D  G++ P  +AP ++ ++ I  + ++     EK+    A+L  +G  
Sbjct: 278 TRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNAEMLAKIDEKVAGIVAKLKSMGIS 337

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V +D+   ++ G +FA  ++ G P+++++G + + ++ +EI  R T  +E  S E +  Y
Sbjct: 338 VKYDNADNKRPGFKFADYEVKGVPVRLVMGGRDLENNTMEIMRRDTLEKETRSCEGIEEY 397

Query: 438 ASHRFSN 444
                 +
Sbjct: 398 VKDLLED 404


>gi|124088770|ref|XP_001347228.1| Prolyl-tRNA synthetase [Paramecium tetraurelia strain d4-2]
 gi|145474039|ref|XP_001423042.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057617|emb|CAH03601.1| Prolyl-tRNA synthetase, putative [Paramecium tetraurelia]
 gi|124390102|emb|CAK55644.1| unnamed protein product [Paramecium tetraurelia]
          Length = 652

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/419 (17%), Positives = 136/419 (32%), Gaps = 73/419 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +  ++ +            P   SA  L  E    + +  E+  
Sbjct: 186 SGCYILRPWAYFIWEQIQRLLDDLIRTEDVENTYFPMFLSAKHLNTEKDHVEGFKAEVAW 245

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E +M   F   ++S+R+LP    Q     R E +     +R
Sbjct: 246 VTKYGQSDLNEPLAIRPTSETIMYPAFAKWVQSHRDLPLKVNQWTNIVRWEFKFPTPFIR 305

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REF                                                  L  E  
Sbjct: 306 TREF--------------------------------------------------LWQEGH 315

Query: 212 VLADTGETQVFCSKDFMDFPIP--SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               T E  V      +DF      E      I  + +  E++      T       +  
Sbjct: 316 TAHSTREEAVKQVYTILDFYEQVYGELLAVPVIKGIKTESEKFAGGDFTT------TVET 369

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
            +P+N     RG++     + G  +S      F+    +  +    S+G    R + A+I
Sbjct: 370 IIPQNG----RGLQGATSHHLGQNFSKMFEINFEDDKRQKAFAWQTSWGF-TTRSIGAMI 424

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGE 386
               D  G++ P  +A ++I +I I   D   +   + CE+I   L K    V +D+   
Sbjct: 425 MFHGDDNGLVLPPRIAKYQIIIIPIIHKDLDEKQLNERCEQIRQILIKQKLRVHFDNRDN 484

Query: 387 -QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              G +F   +  G P+++ +G     +++V +  R    +  + +EE+ N  +    N
Sbjct: 485 YSPGWKFNKWEQKGVPIRLEIGPGEFKNNEVRVVQRFDNKKYQIKIEEL-NQLNQILDN 542


>gi|67471890|ref|XP_651857.1| prolyl-tRNA synthetase [Entamoeba histolytica HM-1:IMSS]
 gi|56468636|gb|EAL46467.1| prolyl-tRNA synthetase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 536

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 76/429 (17%), Positives = 141/429 (32%), Gaps = 71/429 (16%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESG 84
           +++G+I  +   G Y   P      +N+   +     + G      P   S A L  E  
Sbjct: 56  VQSGLIEYYDISGCYILKPSAYGIWENIQHFMDARIKKMGVENAYFPCFVSQATLKKEED 115

Query: 85  RYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E+  +       +       PT E ++   F++ I  +R+LP    Q     R
Sbjct: 116 ELNGFTPEVAWVTKSGQSDLQEPIALRPTSETIIYPAFKNWISGHRDLPIKVNQWCNVVR 175

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E    +  +R+REFL ++ ++   T   ++                             
Sbjct: 176 WEFSHPYPFIRTREFLWQEGHTAFATQAEAE----------------------------- 206

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                  HE + L  +    +             E                  A Y+ T 
Sbjct: 207 ----KECHEILELYASVYEDLLAVPVIRGKKSKGETFP--------------GAYYSLTV 248

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +                  R ++ G   + G  +S      F+  D K   V   S+G+ 
Sbjct: 249 ECIIPTNG-----------RSVQAGTSHHLGQTFSKLFQIEFEDEDNKKQLVWQNSWGL- 296

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSKVGC 377
           + R +   I +  D KGII P   A  ++ +I +      +       E++   L   G 
Sbjct: 297 STRSIGVTIMTHGDNKGIIVPPRAAQKQVVIITLHHKGSPNDEMDAKAEELTQVLIDNGI 356

Query: 378 DVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             F D   E  + G +F+  ++ G P+++ +G +     KV I  R  G + + S E++I
Sbjct: 357 RAFAD-TNEMHKPGWKFSEYEMRGIPIRIELGPRDYEGKKVVIVRRDNGAKSESSWEDLI 415

Query: 436 NYASHRFSN 444
                    
Sbjct: 416 TNIKKTIDE 424


>gi|85057755|ref|YP_456671.1| prolyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|114152170|sp|Q2NJ01|SYP_AYWBP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|84789860|gb|ABC65592.1| prolyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 474

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/419 (15%), Positives = 141/419 (33%), Gaps = 58/419 (13%)

Query: 27  LRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           L+  +I    +KG   +LP G    +N+   +     +TG   +  P +    L+ +   
Sbjct: 26  LKAELIAYSEAKGFIIYLPYGYALWENIQKHLNCTLQKTGHQNVYFPLVFPEKLFHK--- 82

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
                          +K  I G + E  M         S +                   
Sbjct: 83  ---------------EKEHIQGFSPEAAMITTTGKKNLSEK------------------- 108

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
                               +       Y+K   SY  +          +R E       
Sbjct: 109 --------------LVIRPTSEILFSQYYSKTITSYRDLPKLYNQWCNVVRWEKTTKPFL 154

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              EF+     G T     ++ M   +   +      +  + +   +       ++    
Sbjct: 155 RGKEFL--WQEGHTVHATEQEAMQQTLSILDIYQ--KLGKDLLALPFVCGKKTETEKFAG 210

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            L     E      + ++ G   Y G  ++      F+  D +  Y    S+G+ + R++
Sbjct: 211 ALITYSIEALMHDGQALQAGTSHYLGIIFAKSFQIQFQDCDNQKKYAHQTSWGV-STRLI 269

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A+I    D +G++ P  VAP +I +I ++  D+  +   E +++ L K    V  D   
Sbjct: 270 GALIMVHSDDEGLVLPPYVAPMQIVIIPLQTQDESVKQVSENLFSILQK-NYRVHLDLQD 328

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  G +F+  +L G PL++ +G + + + +V I  R    ++++ +++  +     F  
Sbjct: 329 KTAGWKFSQYELKGVPLRIEIGKRGLENDEVTIFQRYNFAKQNIKIKDFPSQIPQLFET 387


>gi|329963564|ref|ZP_08301043.1| proline--tRNA ligase [Bacteroides fluxus YIT 12057]
 gi|328528553|gb|EGF55524.1| proline--tRNA ligase [Bacteroides fluxus YIT 12057]
          Length = 497

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/427 (15%), Positives = 149/427 (34%), Gaps = 49/427 (11%)

Query: 24  KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  
Sbjct: 21  ELVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSR 80

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+   + + KE   +                                         + ++
Sbjct: 81  EAEHVEGFAKECAVVTHY--------------------------------------RLKN 102

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           +      V+     L ++      +     ++Y     SY  +       +   R E   
Sbjct: 103 DPNGGGVVVDPAAKLEEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVFRWEMRT 162

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                + EF+     G T     ++  +  +   N  + +       V       +A   
Sbjct: 163 RLFLRTAEFL--WQEGHTAHATREEAEEEAVRMLNV-YGEFAEKYMAVPVVKGVKSANER 219

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                L     E      + ++ G   + G  ++      F   + K  YV   S+G+ +
Sbjct: 220 FAG-ALNTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-S 277

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCD 378
            R++ A+I +  D  G++ P  +AP ++ ++ I  + ++     EK+    A+L  +G  
Sbjct: 278 TRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNAEMLAKIDEKVAGIVAKLKSMGIS 337

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V +D+   ++ G +FA  ++ G P+++++G + + ++ +EI  R T  +E  S E +  Y
Sbjct: 338 VKYDNADNKRPGFKFADYEVKGVPVRLVMGGRDLENNTMEIMRRDTLEKETRSCEGIEEY 397

Query: 438 ASHRFSN 444
                  
Sbjct: 398 VKDLLEE 404


>gi|295667617|ref|XP_002794358.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
 gi|226286464|gb|EEH42030.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
          Length = 638

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/444 (15%), Positives = 136/444 (30%), Gaps = 81/444 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + +     ++  + G    S P   S D L 
Sbjct: 109 QQVLLKGEMLDYYDVSGCFILKPHSYFIWETIQTWFNDKIKKMGVKNCSFPLFVSEDVLN 168

Query: 81  VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +      + ++ +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 169 KEKDHIEGFAAEVAWVTHAGNSKLERKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWN 228

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT   ++    ++   Y  ++           
Sbjct: 229 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTEAAAREEVLQILEHYAHVY----------- 277

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAP 255
                                                 E      I    +  E++    
Sbjct: 278 -------------------------------------EELLAVPVIRGQKTEKEKFAGGL 300

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y  T + +              + RGI+ G     G  +S     T +    K    +  
Sbjct: 301 YTTTVEGYIPA-----------TGRGIQGGTSHGLGQNFSKMFGITVEDPSAKPDEKKPA 349

Query: 316 SYGIGA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-----AHDQVCRDAC 365
            +          R +  ++    D  G++ P  VA  +  +I +         +      
Sbjct: 350 LHVWQNSWGLSTRTIGIMVMVHGDDLGLVLPPRVADVQTVIIPVGITAKTTDKERASLYA 409

Query: 366 E--KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL- 422
           E   + A +   G  V  D      G +F   +L G PL++  G    +   V    R  
Sbjct: 410 EIDALAAVIEDAGVRVEVDKRDNSPGWKFNDWELRGIPLRLEFGPGESAGHFVTTSRRDI 469

Query: 423 -TGI-REDMSLEEVINYASHRFSN 444
                +  + + E+          
Sbjct: 470 PGKDGKSTIPIPELKTQVPALLET 493


>gi|57641105|ref|YP_183583.1| threonyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
 gi|73919819|sp|Q5JGC8|SYT_PYRKO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57159429|dbj|BAD85359.1| Threonyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
          Length = 626

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/426 (17%), Positives = 142/426 (33%), Gaps = 44/426 (10%)

Query: 24  KLMLRTGMIHQH---SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-- 78
           +LML   ++        G   + P G+     +   + E+    GA+E+  P +   +  
Sbjct: 210 RLMLEQELVDYEPGSDAGNLRYYPKGRLIKSLLEQYVTEKVIEYGAMEVETPIMYDFEHP 269

Query: 79  -LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ-IQ 136
            L     R+ +       +    DK              I +    SYRNLP   Y+  +
Sbjct: 270 ALEKYLNRFPARQ----YVVKSGDKKFFLRFAACFGQFLIKKDATISYRNLPLRMYELTR 325

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E      G+ R R F M D ++     + +   + K +   + +   +GL     
Sbjct: 326 YSFRREKSGELSGLRRLRAFTMPDMHTVARDLKQAMDEFKKQYKLSMEVLKGVGLTP--- 382

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                              +  E  +  ++DF +        +   II    ++E W   
Sbjct: 383 -------------------EDYEVAIRFTRDFWEQN-RDFIVELAKIIGKPVLIEMWDQR 422

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           +            D+L +   +S   I+V +   FG KY       +     +   + + 
Sbjct: 423 FFYFILKFEFNFVDNLDKAAALSTVQIDVENAERFGIKY-------YDEEGKERTPLILH 475

Query: 316 SYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLS 373
               G   RV+ A++E     +          +   +   +        D    +  +L 
Sbjct: 476 CSPSGAIERVMYAILEKQAKLQEKGIKPMYPLWLSPIQVRVIPVSDEVMDYALYVAGKLE 535

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                V  DD G+++  +   A+    P  ++VG      + V ++ R  G + +M LE+
Sbjct: 536 GAKIRVDVDDTGDRLNKKIRKAEKEWIPYIIVVGRNEKEQNTVTVRRRSDGRQVEMQLED 595

Query: 434 VINYAS 439
           +I    
Sbjct: 596 LIREIK 601


>gi|320100286|ref|YP_004175878.1| prolyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
 gi|319752638|gb|ADV64396.1| prolyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
          Length = 480

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 139/413 (33%), Gaps = 61/413 (14%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I    KG+  W+P G KAL     I+ +    TG  E   PT+    ++           
Sbjct: 31  IRYPVKGMNVWMPYGLKALRLTQRILMDLLEETGHQEAYFPTMVPESVFSR--------- 81

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
                    +K  + G   E  + +   +   + R                         
Sbjct: 82  ---------EKDFLKGFGGETFVVEGTVTRKFNERLFVR--------------------- 111

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                     + +       + + K         +++          + PI         
Sbjct: 112 ---------PTSETVMYYMWNMWIKGRKDLPLKMYQVVNVFRYETKMTHPILRVREIMGF 162

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ--WTAPYAATSDVHNEKLFD 269
           + A T    +  ++  +   I      F+ +     IV+   W     A    +N     
Sbjct: 163 IEAHTAHATMEEAEKQISEAIAIYKEFFNRLQLPYFIVKTPPWDTFAGAE---YNYDFIT 219

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
            +P+ K     G+E+G +   G K++      +   DG + +V    YG+ + RV+ AVI
Sbjct: 220 VMPDGK-----GLELGSVINLGQKFAKAFEIKYMDTDGVEKHVYQTCYGV-SERVLGAVI 273

Query: 330 ESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQ 387
               D  G+ +P  +AP ++ ++ + K  +    +   K+   L   G  VF D D    
Sbjct: 274 GIHGDETGLFFPPDIAPIQVVIVPVMKPGENQVLEYAFKVSNILKAHGVRVFVDTDQEHT 333

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            G ++   ++ G P ++ VG K +  S V I  R    +  + LEE ++    
Sbjct: 334 PGWKYYYWEMKGVPTRIEVGRKELDASTVTIARRDKREKHVVKLEEAVDLLRK 386


>gi|218131142|ref|ZP_03459946.1| hypothetical protein BACEGG_02747 [Bacteroides eggerthii DSM 20697]
 gi|317476982|ref|ZP_07936224.1| prolyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
 gi|217986662|gb|EEC52996.1| hypothetical protein BACEGG_02747 [Bacteroides eggerthii DSM 20697]
 gi|316906775|gb|EFV28487.1| prolyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
          Length = 497

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/427 (15%), Positives = 149/427 (34%), Gaps = 49/427 (11%)

Query: 24  KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  
Sbjct: 21  ELVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSR 80

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+   + + KE   +                                         + ++
Sbjct: 81  EAEHVEGFAKECAVVTHY--------------------------------------RLKN 102

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           +      V+     L ++      +     ++Y     SY  +       +   R E   
Sbjct: 103 DPNGGGVVVDPAAKLEEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVFRWEMRT 162

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                + EF+     G T     ++  +  +   N  + +       V       +A   
Sbjct: 163 RLFLRTAEFL--WQEGHTAHATREEAEEEAVRMLNV-YGEFAEKYMAVPVVKGVKSANER 219

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                L     E      + ++ G   + G  ++      F   + K  YV   S+G+ +
Sbjct: 220 FAG-ALNTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKLEYVWATSWGV-S 277

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCD 378
            R++ A+I +  D  G++ P  +AP ++ ++ I  + ++     EK+    A+L  +G  
Sbjct: 278 TRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNAEMLAKIDEKVAGIVAKLKSMGIS 337

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V +D+   ++ G +FA  ++ G P+++++G + + ++ +E+  R T  +E  S + +  Y
Sbjct: 338 VKYDNADNKRPGFKFADYEVKGVPVRLVMGGRDLENNTMEVMRRDTLEKETRSCDGIEEY 397

Query: 438 ASHRFSN 444
                  
Sbjct: 398 VKDLLEE 404


>gi|91226476|ref|ZP_01261225.1| threonyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|91189108|gb|EAS75389.1| threonyl-tRNA synthetase [Vibrio alginolyticus 12G01]
          Length = 410

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 67/180 (37%), Gaps = 4/180 (2%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   IR + +  G 
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFIRAKLDEYGY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    LW  SG +D Y   M       ++     P +      IF   +KSYR
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGHVQIFNQGLKSYR 350

Query: 127 NLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           +LP    +     R+E      G+MR R F   DA+ F    +  +   N + + Y    
Sbjct: 351 DLPLRMAEFGSCHRNEPSGALHGIMRVRGFTQDDAHIFCTESQIQEEVTNCIKMVYDTYQ 410


>gi|291320056|ref|YP_003515314.1| prolyl tRNA synthetase [Mycoplasma agalactiae]
 gi|290752385|emb|CBH40356.1| Prolyl tRNA synthetase (Proline tRNA ligase) [Mycoplasma
           agalactiae]
          Length = 478

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 148/413 (35%), Gaps = 68/413 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P      + +  ++ E         + +P      L   E      +  E+  +
Sbjct: 35  GTLIFKPNSYGIWEQIQKVLNEIFRGLKVQNVYLPLFIPDRLLAKEKEHIAGFNPELATI 94

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               DK +       PT E +  D+F+  I S+++LP  + Q     R E +     +RS
Sbjct: 95  TKVGDKELDQKIYVRPTSEVLFADLFKKMIVSHKDLPILYNQWANVVRWE-KTTNPFLRS 153

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++        + +  +                                       
Sbjct: 154 REFLWQE---GHTCHKSAIEARKLTREMIN------------------------------ 180

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                   V+         IP+       II   +  E++    +  +            
Sbjct: 181 --------VYAKFLKNYLAIPT-------IIGKKTPYEKFAGACSTYT-----------V 214

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   Y    +S     +FK    +D +V   S+G+ + R++ A+I + 
Sbjct: 215 EAMMKDGKALQAGTSHYLAQNFSKKFEISFKNDKNEDEFVYQTSWGV-STRLLGAIIMTH 273

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            D +GII P  VAP ++ ++ + A+ Q    D C ++  +L +    V  D   +  G +
Sbjct: 274 GDNRGIIIPPKVAPVQVDILELFANKQPKVHDFCNELAKQLERK-FRVRLDSTDKSPGYK 332

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + +++ G PL++ VG K + +  V I  R T  +  +S+ +V +      ++
Sbjct: 333 ASNSEIQGVPLRIEVGPKDLENKTVTIVRRDTLEKTMVSVSDVKSKVRELLNS 385


>gi|324500217|gb|ADY40110.1| Bifunctional aminoacyl-tRNA synthetase [Ascaris suum]
          Length = 1924

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/425 (16%), Positives = 131/425 (30%), Gaps = 75/425 (17%)

Query: 28   RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGR 85
            +  MI  +   G Y   P      + +     +E  + G      P   S   L  E   
Sbjct: 1445 KADMIEYYDVSGCYVLRPWSFAIWETIKKWFDKEIKKLGVRNCYFPMFVSQGALEKEKTH 1504

Query: 86   YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
               +  E+  +    +  M       PT E VM   +   IKS+R+LP    Q     R 
Sbjct: 1505 IADFAPEVAWVTRAGNSEMSEPIAIRPTSETVMYPSYAKWIKSHRDLPLRLNQWCNVVRW 1564

Query: 142  ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            E +     +R                                               +  
Sbjct: 1565 EFKHPTPFLR-----------------------------------------------TRE 1577

Query: 202  IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                  H     A+    +VF   D                   +   +     +  T +
Sbjct: 1578 FLWQEGHTAFQTAEEAHQEVFQILDLYAKVYTDLLAIPVVKGRKSEKEKFAGGDFTTTVE 1637

Query: 262  VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIG 320
             +             V+ R I+     + G  +S     +F+  + G   YV   S+G+ 
Sbjct: 1638 AYVP-----------VNGRAIQGATSHHLGQNFSKMFDISFEDPNTGSKAYVYQNSWGL- 1685

Query: 321  AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARL- 372
              R + A++    D  G++ P  VAP ++ ++ +    Q   +         ++I + L 
Sbjct: 1686 TTRTIGAMVMIHGDDFGLVLPPRVAPIQVIVVPVGITAQTSEEQRVSLISKAKEIASMLL 1745

Query: 373  SKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            ++       D       G +F   +  G P+++ VG K V++S+V    R +G +  + +
Sbjct: 1746 TEADIRAEADLRDNYSPGWKFNHWEQKGVPIRMEVGPKDVANSQVTCVIRHSGKKVAVPM 1805

Query: 432  EEVIN 436
              +I 
Sbjct: 1806 ANLIA 1810


>gi|145511255|ref|XP_001441555.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408805|emb|CAK74158.1| unnamed protein product [Paramecium tetraurelia]
          Length = 937

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 98/308 (31%), Gaps = 28/308 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++ I +E   RD      K  L   + HQ S G   + P G    + +   +R +    G
Sbjct: 319 YVKIQKELAQRDHRNVGKKQNLY--LFHQLSPGSAFFYPSGAHIYNTLMNFLRRQYYIRG 376

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +A LW  SG YD Y + +  +    +      P +      +F     SY
Sbjct: 377 YQEVISPNIFNAQLWKISGHYDKYKENLFFINMGEEGEYGLKPMNCPGHCLMFDMVQHSY 436

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F    +  R+E+     G+ R R F   DA+ F    +               I
Sbjct: 437 RDLPIRFADFGVLHRNEVHGALTGLTRVRRFQQDDAHIFCRMDQIQDE-IKNCLDFLSYI 495

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G                   EF +   T   +   +KD  D               
Sbjct: 496 YSLFG------------------FEFKLYLSTRPEKFLGTKDVWDNAEYQLEQGLKKFGK 537

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATF 302
              I     A Y    DV   KL+D+     +     ++      F    + S  +    
Sbjct: 538 HFEINPGDGAFYGPKIDV---KLYDAYKREHQCGTIQLDFNLPERFNLQFRASEDVHEVQ 594

Query: 303 KGADGKDH 310
           +  +   +
Sbjct: 595 QDKETVHN 602



 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 1/140 (0%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +E G            +    K   G  H     +  +   R +   +E           
Sbjct: 695 LESGSSQALSNHELHKVLHEKKYELGYHHLKPGFARPVIIHRAILGSLERMIAVLTEQCG 754

Query: 342 -DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
                      + +       RD  EKI ARL   G  V  D+  + +  +   A +  +
Sbjct: 755 GKWPFWLSPKQLILCPVSAYYRDVAEKISARLRLEGYTVNTDESDQTLAKKVRNAQVQYY 814

Query: 401 PLQVIVGSKFVSDSKVEIKH 420
               ++G + V    ++I+ 
Sbjct: 815 NFVGVIGEEEVRTGVIDIRD 834


>gi|224129118|ref|XP_002320505.1| predicted protein [Populus trichocarpa]
 gi|222861278|gb|EEE98820.1| predicted protein [Populus trichocarpa]
          Length = 322

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 107/356 (30%), Gaps = 40/356 (11%)

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMR 151
           M       D+     P +      +++  + SYR+ P    ++   +R EL     G+ R
Sbjct: 1   MFDQMKIEDEQYQLRPMNCPYHILLYKRKLNSYRDFPIRVAELGTVYRYELSGSLHGLFR 60

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F   DA+ F L  +        +      I  + G +   +   + P          
Sbjct: 61  VRGFTQDDAHIFCLEDQIKDE-IRGVLDLTEEILLQFGFRRYEVNLSTRPEKS------- 112

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                         D  +    +     DD      I E   A Y    D+   K+ D+L
Sbjct: 113 ----------VGDDDIWEKATSALRDALDDKGWSFQIDEGGGAFYGPKIDL---KIEDAL 159

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVI 329
               + S   ++    F    ++      T+  ++ +     M    +     R    +I
Sbjct: 160 GRKWQCSTIQVD----FNLPQRFD----VTYVDSNTEKKRPIMIHRAVLGSLERFFGVLI 211

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E       +                        + C+++ ++L   G        GE++ 
Sbjct: 212 EHYAGDFPLWLSPVQVRILPVT-------DTQLEYCKEVISKLKGNGIRAEV-CQGERLP 263

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
                A+    PL  +VG K      V I+ R +G    + +++ I+         
Sbjct: 264 KLIRNAEKQKIPLMAVVGPKEAETQTVTIRSRFSGEVGTIEIDDFISRIKSAIERR 319


>gi|302554424|ref|ZP_07306766.1| prolyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302472042|gb|EFL35135.1| prolyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 471

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/414 (14%), Positives = 128/414 (30%), Gaps = 59/414 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A +      TGA     P L     L  E+   + +  E+  +
Sbjct: 35  GTMIIRPYGYGLWERMQAEMDARIKETGAQNAYFPLLIPESYLTREADHVEGFAPELAVV 94

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                K +                                                    
Sbjct: 95  THGGGKELEEPAVVRP-------------------------------------------- 110

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +      S++K   SY  +   +   +  +R E  P     + EF+     
Sbjct: 111 --------TSEMIINASFSKWVQSYRDLPLLINQWANVVRWELRPRLFLRTSEFL--WQE 160

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++  DF        ++D +     ++                   +L E   
Sbjct: 161 GHTAHATYEEARDFASHIHRRVYEDFMLNVLAMDVVPGRKTVKERFAGAINTLTL-EGMM 219

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + +++      G  ++   +  +   DG+   V   S+G    R++ A++    D  
Sbjct: 220 GDGKALQMATSHELGQNFAKAFNTRYLSKDGRQELVWQTSWGS-TTRMIGALVMMHGDDG 278

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
           G+  P  +A  +  ++ I   D+       ++  RL   G  V  DD      G +    
Sbjct: 279 GLRVPPRLAQIQAVVLAI-KGDEAVLAKVRELGDRLKAAGVRVHVDDRTDIPFGRRAVDW 337

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +L G P+++ VG + + +    +  R+ G +E +SL+ +++        ++ +L
Sbjct: 338 ELKGVPVRIEVGPRDLENGTAMLARRIPGGKEPVSLDALVSLLPEVLEKDQALL 391


>gi|187776737|ref|ZP_02993210.1| hypothetical protein CLOSPO_00252 [Clostridium sporogenes ATCC
           15579]
 gi|187775396|gb|EDU39198.1| hypothetical protein CLOSPO_00252 [Clostridium sporogenes ATCC
           15579]
          Length = 478

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/409 (13%), Positives = 124/409 (30%), Gaps = 61/409 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P      + +   + E    TG   + +P      L   E    + +  E+  +
Sbjct: 39  GCMIIRPYAYAMWEMIQKDLDERFKATGHENVYMPLFIPESLLNKEKDHIEGFAPEVAWV 98

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               ++ +                                                    
Sbjct: 99  THGGEEELTERLCVRPT------------------------------------------- 115

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI-PMRAESGPIGGDLSHEFIVLAD 215
                 F         SY  +   Y +    +  +        +        H     A+
Sbjct: 116 --SETLFCEHYAKIVQSYKDLPKLYNQWCSVVRWEKTTRPFLRTAEFLWQEGHTIHATAE 173

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
               +     +     +  +      I    +  E++    A  +            E+ 
Sbjct: 174 EARKETEQMLNVYAKHVE-DVLAIPVIKGQKTEQEKFAGAVATYT-----------IESL 221

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G   Y G  ++      +   +GK   V   S+G+   R++ A+I    D 
Sbjct: 222 MHDGKALQTGTSHYLGDHFASAFGIQYSDKEGKLQNVHQTSWGV-TTRMLGAIIMVHGDN 280

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++ P  +AP ++ ++ +  H +   D   ++  R+ KV   V  DD  +  G +F   
Sbjct: 281 SGLVVPPRIAPIQVVIVPVAQHKEGVLDKAYELKERVGKV-ARVKLDDTDKMPGWKFNEY 339

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G P+++ VG K +  ++V +  R T  +  +S++E+    S   + 
Sbjct: 340 EMKGVPIRLEVGPKDIEKNQVVLVRRDTREKITVSMDELEVVISELLNK 388


>gi|313619135|gb|EFR90924.1| prolyl-tRNA synthetase [Listeria innocua FSL S4-378]
          Length = 145

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 1/139 (0%)

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           AT    +G+   + MG YGIG  R+++A+ E S+D  G++W   ++PF + LI +    +
Sbjct: 1   ATILDENGRAQPIIMGCYGIGLSRILSAIAEQSNDENGLVWDKQISPFDLHLIPVNMKSE 60

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 E +Y  L K G  V  DD  E+ G +FA ADL+G P+++ VG K  ++  VE+K
Sbjct: 61  EQVAFAESLYDSLQKAGFSVLIDDRTERAGVKFADADLIGLPIRITVGKK-AAEGIVEVK 119

Query: 420 HRLTGIREDMSLEEVINYA 438
            R TG   ++  +E++N  
Sbjct: 120 IRKTGEMIEVRQDELLNTL 138


>gi|262341274|ref|YP_003284129.1| proline-tRNA ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272611|gb|ACY40519.1| proline-tRNA ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 488

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 88/443 (19%), Positives = 156/443 (35%), Gaps = 94/443 (21%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGR 85
           +R  MI +         P G    + +   + +    TG   +  P L    ++  E   
Sbjct: 30  VRGFMIVK---------PYGYSLWEKMKQELDKMLKNTGHKNVYFPLLIPKSVFSKEKEH 80

Query: 86  YDSYGKEMLRLAD----------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            + + +    +                  R  + ++  PT E ++   ++  I+SYR+LP
Sbjct: 81  TEIFSEGCAVVTHSRLKKNKEELIIDPESRLQEELVIRPTSESIIWKTYKRWIQSYRDLP 140

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
               Q     R E+R R   +R+ EFL ++ ++   T + +    NK+   Y        
Sbjct: 141 VLLNQWGNALRWEMRTRL-FLRTTEFLWQEGHTAHSTKKEAIEEANKILNIY-------- 191

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                          D S  F+                              I  L  I 
Sbjct: 192 --------------TDFSENFMA-----------------------------IPVLQGIK 208

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
                 Y +              E      + +++G   + G  +S      F   +GK 
Sbjct: 209 PHMDKFYGSE--------KTYCIEALMQDGKALQIGTSHFLGQNFSKAFDVQFTNYNGKK 260

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACE 366
            YV   S+G+ + R++  +I S  D KG+I P  +AP +I +I I  + +      D  E
Sbjct: 261 EYVWSTSWGV-STRLIGGLIMSHSDDKGLILPPKIAPIQIVIIPIYKNKEKFGIINDVVE 319

Query: 367 KIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           KI   L +    V +D+      G +F   ++ G PL++ +GS  + + KVEI  R T  
Sbjct: 320 KILNVLEQERIRVKYDNRVTFTPGWKFHEYEMKGVPLRISIGSNEIKNEKVEIFRRDTYE 379

Query: 426 REDMS---LEEVINYASHRFSNN 445
           +  +S   L+ +I         N
Sbjct: 380 KIYISWINLKNLIPKLLDDIQKN 402


>gi|121716703|ref|XP_001275886.1| prolyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
 gi|119404043|gb|EAW14460.1| prolyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
          Length = 608

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/430 (16%), Positives = 129/430 (30%), Gaps = 81/430 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
            G +   P      + +      E  + G    S P   S D+   E    + +  E+  
Sbjct: 115 SGCFILKPASYSIWEEIQQWFNAEIKKIGVKNCSFPLFVSEDVLQREKDHIEGFAAEVAW 174

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 175 VTHAGSTPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLR 234

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT   ++     +   Y RI+                          
Sbjct: 235 TREFLWQEGHTAHLTEGAAREEVLHILDLYARIYE------------------------- 269

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      +    +  E++    Y  T + +       
Sbjct: 270 -----------------------ELLAVPVVKGQKTEKEKFAGGLYTTTVEGYIPA---- 302

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA-----MRVV 325
                  + RGI+ G     G  +S     T +    K    +   +          R +
Sbjct: 303 -------TGRGIQGGTSHGLGQNFSKMFGITVEDPSAKPEEKKPPLHVWQNSWGLSTRTL 355

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------LSKVGCD 378
             ++    D +G++ P  VA  +  ++ +    +   +  EK+YA        L   G  
Sbjct: 356 GVMVMIHSDNRGLVLPPRVAETQTIIVPVGITAKTTEEDREKLYAEIDGLVSVLKAAGVR 415

Query: 379 VFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMSLEEV 434
              D       G +F   +L G PL++  G    +   V    R       +  + + E+
Sbjct: 416 ADSDKRDGYSPGWKFNDWELRGVPLRIEFGPGESAGQFVTAARRDIPGKDGKSTIPIAEL 475

Query: 435 INYASHRFSN 444
                     
Sbjct: 476 STAVPALLDT 485


>gi|119184159|ref|XP_001243013.1| hypothetical protein CIMG_06909 [Coccidioides immitis RS]
          Length = 668

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 90/242 (37%), Positives = 125/242 (51%), Gaps = 2/242 (0%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK ++PI       A   S  L+++ G I Q   GIY  LPLG +    +  +I +    
Sbjct: 43  SKIWVPIAPVPKNLAAQDSTALLVQAGFIRQAYAGIYHLLPLGLRVQKKLENLIDKHMES 102

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA ++ +  L S  LW  SGR      E+ R  DR +   +  PTHEE +T +      
Sbjct: 103 LGASKLFLSALSSQLLWKLSGRLHD-DSEVFRFLDRKNAPFLLAPTHEEEITKLVGGLTN 161

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY+ LP   YQI  K+RDE RPR G++R+REFLMKD Y+FD + E +  SYN +  +Y+R
Sbjct: 162 SYKELPLRVYQISRKYRDERRPRQGLLRAREFLMKDLYTFDYSTEEAMKSYNSVKEAYVR 221

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFDDI 242
           +F  L L  I   A+SG +GG L+HEF + +  GE  V  CSK    F     +      
Sbjct: 222 LFDELKLPYIVAAADSGSMGGSLNHEFHLESSKGEDIVVSCSKCNYKFNEEVTDGHASKF 281

Query: 243 IS 244
            S
Sbjct: 282 AS 283



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 21/194 (10%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-------------KGADGKDHYVQM 314
                +    +   IE+GH F  GT+YS P+ AT              K +      +QM
Sbjct: 478 CSKCEDGVVTTHTTIEMGHTFLLGTRYSSPLQATVAIDPAKSGNADGAKESPKSVVPLQM 537

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R++AAV +   D +G+ WP ++APF   ++   A  +      +KIY  ++ 
Sbjct: 538 GCYGIGVSRMIAAVADILADSRGLNWPRAMAPFSAIIVPGLAFQED----SKKIYDHIAS 593

Query: 375 --VG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDMS 430
              G  D   DD  + +  +   ADL G P+  +VG  +     VE++ R    +R D+S
Sbjct: 594 YHNGSIDTILDDREQPLIRKLKDADLTGIPVICVVGKSWERHRNVEVQCRRLNNLRTDVS 653

Query: 431 LEEVINYASHRFSN 444
           L+E+ ++ S     
Sbjct: 654 LDELPSFISSLLDK 667


>gi|150403636|ref|YP_001330930.1| prolyl-tRNA synthetase [Methanococcus maripaludis C7]
 gi|171472898|sp|A6VK03|SYP_METM7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|150034666|gb|ABR66779.1| prolyl-tRNA synthetase [Methanococcus maripaludis C7]
          Length = 460

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 150/456 (32%), Gaps = 81/456 (17%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIR 58
           M  S+++  IL+               + G+  +    KG   +LP G K       I+R
Sbjct: 1   MEFSEWYSDILE---------------KAGIYDLRYPIKGCGVYLPYGFKIRRYSFEILR 45

Query: 59  EEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           +  + TG  E   P L   +L   E      +  E+  +       +             
Sbjct: 46  KLLDETGHDETLFPMLIPENLLAKEGEHIKGFEDEVFWVTHGGKTPLEVKLALRP----- 100

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
                                             +  + M   +    T    K      
Sbjct: 101 -------------------------------TSETTMYYMMKQWIKVHTDLPLKLYQVVN 129

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y     R  ++          +    +H      +  + Q+          +     
Sbjct: 130 TFRYETKHTRPLIRLR------EIMSFKEAHTAHATKEDCDAQI-------KEALNLYGE 176

Query: 238 DFDDIISLNSI--VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
            FD+I     I    +W     A   +  + ++   P+ K      +++G +   G  ++
Sbjct: 177 FFDEICVPYIISKRPEWDKFPGADYTMAFDTIY---PDGK-----TMQIGTVHNLGQNFA 228

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI- 354
                 F+  DG+  +V    YGI + R +A++I    D KG++ P  VAP +I LI + 
Sbjct: 229 KTFELEFETPDGEKDFVYQTCYGI-SDRAIASLISVHGDEKGLVIPVDVAPIQIVLIPLL 287

Query: 355 -KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
            K  +++  +  +++ + L      V  DD   + G ++   ++ G PL++ +G + + +
Sbjct: 288 FKGKEEIVMEKIKELNSTLKSE-FRVHLDDRDIRPGRKYNDWEIKGVPLRIELGPRDIEN 346

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  I  R TG +  +    ++       S  +  L
Sbjct: 347 GQALIVRRDTGEKITVEYSNILEEVEKIVSMYKENL 382


>gi|213961830|ref|ZP_03390096.1| prolyl-tRNA synthetase [Capnocytophaga sputigena Capno]
 gi|213955619|gb|EEB66935.1| prolyl-tRNA synthetase [Capnocytophaga sputigena Capno]
          Length = 492

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/411 (14%), Positives = 125/411 (30%), Gaps = 45/411 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G     P G    + + A +      TG      P       +      +    E     
Sbjct: 33  GCMVIKPYGYAIWEKMQAELDRMFKETGHTNAYFPLFVPKSYFEA----EEKNAEGFAKE 88

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
                         E    I     K    L                             
Sbjct: 89  CAVVTHYRLKTDPNEKGKLIVDPEAKLEEELIVRPT------------------------ 124

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                   +      +Y     SY  +   +   +  +R E        + EF+     G
Sbjct: 125 --------SEAIIWSTYKNWIQSYRDLPILINQWANVVRWEMRTRLFLRTAEFL--WQEG 174

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            T      + ++      N     +   N +           S+           E    
Sbjct: 175 HTAHATKAEALEEAEKMMNVYATFV--ENFMAVPVIKGLKTESERFAGADETFCIEAMMQ 232

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + ++ G   + G  ++      +   +GK  YV   S+G+ + R++ A+I +  D  G
Sbjct: 233 DGKALQAGTSHFLGQNFAKAFEVKYATKEGKQEYVWASSWGV-STRLMGALIMTHSDDNG 291

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDVFWDDMG-EQIGSQFA 393
           ++ P  +AP ++ ++ I   ++         + +   L K G  V +DD   +  G +F 
Sbjct: 292 LVLPPKLAPIQVVIVPIYKGEEQLEKVRTHIQPLVEELKKRGISVKFDDRDTQSPGFKFH 351

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             +L G P+++ VG + + ++  E+  R T  +E ++ ++++ +      +
Sbjct: 352 EYELKGVPVRLAVGQRDIENNTFEVARRDTLTKETVTGDQIVAHIQQLLED 402


>gi|332970051|gb|EGK09049.1| proline--tRNA ligase [Desmospora sp. 8437]
          Length = 488

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/401 (13%), Positives = 122/401 (30%), Gaps = 60/401 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G   + P G +  + +   +      TG      P L     L  E    + +  E+  +
Sbjct: 39  GCIVFKPDGFELWERIQEAMDRRFKETGHRNAYFPMLIPESFLQKEKEHVEGFNPELPWV 98

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            +   + +                   S   +   + Q                      
Sbjct: 99  TEAAGEKLEERLALRPT----------SETMIGHMYSQWIH------------------- 129

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                          + +  +F    R    L                 L  E      T
Sbjct: 130 ------SHRDLPVLINQWANVFRWEKRTMPFLRTSEF------------LWQEGHTAHAT 171

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E     +   ++         + +++     +  W      +          S+ E   
Sbjct: 172 EEEARQETMQMLEI--------YREVVEQVLAIPVWKGQKTPSERFAGAVETYSI-EAMM 222

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   Y G  ++      F   D +  YV   S+G  + R++ ++I    D +
Sbjct: 223 KDGKAVQAGTSHYLGENFAKGFDIKFLDRDNQLKYVHTTSWGT-STRLIGSMIMVHGDDR 281

Query: 337 GIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           G+  P  VAP ++ +I +      +   +  + ++  L   G  V  D   E  G +F  
Sbjct: 282 GLALPPRVAPTQVVMIPVGPVKLREKVMERFDPLFDDLQAAGVRVRADLREETPGWKFNE 341

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            ++ G PL++ +G + V   +V +  R TG +  +++++ +
Sbjct: 342 WEMRGVPLRLEIGPRDVDKGEVVLARRDTGEKMAVAIDQAV 382


>gi|195573301|ref|XP_002104632.1| Aats-glupro [Drosophila simulans]
 gi|194200559|gb|EDX14135.1| Aats-glupro [Drosophila simulans]
          Length = 996

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/422 (16%), Positives = 124/422 (29%), Gaps = 73/422 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y            +      E  R G  E   P   S   L  E      +  E+  
Sbjct: 527 SGCYILRHWSFAIWKAIKTWFDAEITRMGVKECYFPIFVSKAVLEKEKTHIADFAPEVAW 586

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D  +       PT E VM   +   ++SYR+LP    Q     R           
Sbjct: 587 VTKSGDSDLAEPIAVRPTSETVMYPAYAKWVQSYRDLPIWLNQWNYVVR----------- 635

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF+                        +LR    L  +     A+      + + E +
Sbjct: 636 -WEFMQPT--------------------PFLRTREFLWQEGHTAFADKE----EAAKEVL 670

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            + D     +  +       +    T+ +               Y  T +          
Sbjct: 671 DILD--LYALVYTHLLAIPVVKGRKTEKEKFA---------GGDYTTTVEAFIS------ 713

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                VS R I+     + G  +S      ++  + +       +      R +  +I  
Sbjct: 714 -----VSGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVYQNSWGITTRTIGVMIMV 768

Query: 332 SHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYARLSKVGCDVFWDDM 384
             D +G++ P  VA  +  ++     +   D       DAC+ +  RL   G     D  
Sbjct: 769 HADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKALEKRLVGGGVRCEGDYR 828

Query: 385 GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRF 442
                G +F   +L G PL++ VG K +   + V ++ R TG +  + L +V        
Sbjct: 829 DNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVR-RDTGEKITIPLADVEKKIPALL 887

Query: 443 SN 444
             
Sbjct: 888 ET 889


>gi|268323710|emb|CBH37298.1| putative glycyl-tRNA synthetase [uncultured archaeon]
          Length = 486

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/488 (14%), Positives = 140/488 (28%), Gaps = 69/488 (14%)

Query: 12  QENPRD-----AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +  P+D     A       + +   I+  + G Y + PLG      V    R+   R G 
Sbjct: 8   KGAPKDEVAELARRRG--YLGQAFEIYGAAAGFYDYGPLGAGLKRRVENQWRDFYMREGF 65

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK------------------------ 102
            E+   ++    ++  SG  +S+    +      +                         
Sbjct: 66  YEIETTSVVPRSVFEASGHLESFTDPTVMCTRCKNFFRVAEDLDVGKKCPDCGGVLEAAG 125

Query: 103 ------------------------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                                   A +   T + +  +  R    +   LPF   QI   
Sbjct: 126 EINLMFPTRIGVPKAGSEEKTKSEAYLRPETAQGIFLNFQRLLRFNRDKLPFGIIQIGKA 185

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           +R+E+ PR  ++R REF + +   F    E + H   +               +      
Sbjct: 186 YRNEISPRQSLIRLREFTLAEVEVFVAPSEKNSHPEFEAVADRKLRLV-PASSNTNYELG 244

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                     E +         +      +D  +         +       ++       
Sbjct: 245 IENYEDKSVGEAVRSGIIANEYLGYHIAKVDEFLEGLGIPRAKLRFRQHQRDEMAHYATD 304

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
             D           E   V+ RG             S     + +   GK     +    
Sbjct: 305 CWDAEFLSDRYGWMEIVGVADRGDYDLKAHA----SSSNTDMSVRTEQGKII-PHVIEPS 359

Query: 319 IGAMRVVAAVIES-SHDGKGIIWPDSVAPFKISLINIKA------HDQVCRDACEKIYAR 371
            G  R+  A++ES  +  +       V   K  L  IKA      +    ++   +++  
Sbjct: 360 YGIDRIFYALLESAYYKEQVGKENRQVLKLKSELAPIKAAVFPLLNKAELKEKAREVFQN 419

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L      V +D  G  IG ++   D +G P  + +  + + D  V I+ R T  +  + +
Sbjct: 420 LRDASIFVEYDGSG-SIGRRYRRQDEIGTPYCITIDYETLEDDAVTIRERDTMKQVRVPI 478

Query: 432 EEVINYAS 439
            EV    +
Sbjct: 479 AEVEKVLA 486


>gi|315425642|dbj|BAJ47301.1| prolyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
          Length = 484

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 90/457 (19%), Positives = 166/457 (36%), Gaps = 87/457 (19%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S++F  +L E    A I   +  ++         G   +L  G   L  V  ++ +E  
Sbjct: 20  FSEWFDKLLLE----ARIVDDRFPVK---------GFSVYLENGAYILRRVREMLEKELR 66

Query: 63  RTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIY----GPTHEEVMTDI 117
            TG  EM  P + + +L   E+     +  E+  +     K +       PT E +M  +
Sbjct: 67  ETGHKEMIFPLVTTEELLGKEAQHIKGFSTEVFVIESAGGKPLDVKLIVRPTSETIMYPM 126

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F+  I+S+ +LP   +Q  + +R E +    ++R RE                       
Sbjct: 127 FKLWIRSHADLPLLVHQSNMVYRHETKATRPLLRVRE----------------------- 163

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                   I  + +H     A   E QV          +     
Sbjct: 164 ------------------------IPWNEAHTVHATAAEAEQQVR-------KAVEIYRK 192

Query: 238 DFDDIISLNSIV--EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
             D +     ++    +     A         FD+   + RV+    +V  +   G  +S
Sbjct: 193 VLDQLGLAYLVLKRPDFDKFPGA----RYSIAFDAWNPDGRVN----QVATVHNLGKNFS 244

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                 F+  DGK        YG G  RV+AA+I    D +G++ P  VAP  + ++ I 
Sbjct: 245 KVFEIEFETRDGKRENPHQLCYGFGYSRVLAALISQHGDDRGLVLPPVVAPLHVVIVPIV 304

Query: 356 AH--DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVS 412
               ++  +  C  +  RL K    V  DD      G +F   + LG P+++ +G + V+
Sbjct: 305 FKGQEESIKQFCHSLAERLQK--FAVKVDDREDVTPGEKFYHWEKLGVPVRLEIGPREVA 362

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +++  +  R T  ++ +++EE+     +  +N    L
Sbjct: 363 ENRATLFRRDTLEKQVVAVEEIERAVENVLTNMGQSL 399


>gi|108758355|ref|YP_634772.1| prolyl-tRNA synthetase [Myxococcus xanthus DK 1622]
 gi|123073939|sp|Q1CXV1|SYP_MYXXD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|108462235|gb|ABF87420.1| prolyl-tRNA synthetase [Myxococcus xanthus DK 1622]
          Length = 483

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 139/417 (33%), Gaps = 72/417 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ +     G      P L     L  E+   + +  ++  +
Sbjct: 39  GCMVIRPNGYALWENMQRVLDKMFKDLGHKNAYFPLLIPESYLKKEAEHVEGFNPQLAVV 98

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                 + ++  +  PT E ++   F   I+SYR+LP    Q     R E+R R  + R+
Sbjct: 99  THAGGSKLEEPYVIRPTSETIINRSFAKWIQSYRDLPLLLNQWANVMRWEMRTRLFL-RT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL                                                    E   
Sbjct: 158 TEFL--------------------------------------------------WQEGHT 167

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             +T E          +         +         +   T   + +       L     
Sbjct: 168 CHETEEDA--------EKETRQMLEVYRTFAEDYMAMPVMTGQKSESERFAG-ALRTYSI 218

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G     G  ++      F+G DGK H+V   S+G+ + R++  +I + 
Sbjct: 219 EAMMQDKKALQAGTSHNLGQNFAKAFDTQFQGRDGKMHHVWQTSWGV-STRLIGGLIMTH 277

Query: 333 HDGKGIIWPDSVAPFKISLINI-----KAHDQVCRDACEKIYARLSKVGCDVFWDDMG-E 386
            D  G+I P  +A   + +I I      A      +    + A L K G  V  DD   +
Sbjct: 278 SDDAGLIVPPKLAATHVVIIPIFGKASDAEKAQVLEKTNALAADLRKAGLGVVLDDDDTK 337

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             G ++   +L+G  L++ +G K ++ +   +  R    +E +SL+E ++ A     
Sbjct: 338 SPGFKYNEHELIGTCLRIELGPKDLAKNSCVMVRRDVRQKEFVSLDEAVSKAQAMLD 394


>gi|217031454|ref|ZP_03436959.1| hypothetical protein HPB128_21g12 [Helicobacter pylori B128]
 gi|216946654|gb|EEC25250.1| hypothetical protein HPB128_21g12 [Helicobacter pylori B128]
          Length = 517

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 2/187 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P  +      + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 330 ADIVQVKESDHCPNCQGALKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKEQFFEMGCY 389

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 390 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGV 449

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           D   DD   + G++    +L+G  L +IVG + + + + E   R    ++ +   E+   
Sbjct: 450 DALLDDRDARFGAKMRDFELIGERLALIVGKQTLENKEFECVKRANLEKQTIKDIELEEK 509

Query: 438 ASHRFSN 444
                ++
Sbjct: 510 ILEILAS 516



 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 73/175 (41%), Positives = 98/175 (56%), Gaps = 1/175 (0%)

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
               GA  + +  +  A LW +SGR D YGKE+L   DR +   +  PT EE +T+I  +
Sbjct: 1   MQEHGAQNILMSFVVLASLWEKSGRLDKYGKELLVFKDRKNNDFVLSPTLEENITEIAAN 60

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP   YQI  KFRDE+RPRFG++R+REF+MKD YSF    E     +     +
Sbjct: 61  FIKSYKQLPVHLYQIHTKFRDEIRPRFGLVRAREFIMKDGYSFHEDAESLDKEFLNTQSA 120

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           Y  I   LGL    + A+SG IGG  S EF+VL + GE  +   K+  D+    E
Sbjct: 121 YKEILSDLGLDFRIVEADSGAIGGSKSKEFVVLTECGEDTIVVCKNC-DYAANIE 174


>gi|23098021|ref|NP_691487.1| prolyl-tRNA synthetase [Oceanobacillus iheyensis HTE831]
 gi|81846123|sp|Q8ESQ5|SYP_OCEIH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|22776245|dbj|BAC12522.1| prolyl-tRNA synthetase [Oceanobacillus iheyensis HTE831]
          Length = 478

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 64/402 (15%), Positives = 125/402 (31%), Gaps = 59/402 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDK 102
           P G    +N+   +      TG   ++ P      L   E    + +  E+         
Sbjct: 46  PYGYAIWENIKNELDRMFKETGHTNVAFPLFIPESLLQKEKDHVEGFAPEV--------- 96

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
                                                       +      E L +    
Sbjct: 97  -------------------------------------------AWVTHGGEEELTERIAV 113

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +       Y+    SY  +          +R E        S EF      G T   
Sbjct: 114 RPTSEVLFCDYYSNNIHSYRDLPKLYNQWGNVVRWEKTTRPFLRSSEFH--WQEGHTAHA 171

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             ++  +         +  ++     V                K   ++ E      + +
Sbjct: 172 TDEEATEE-TNRMLETYAKLVEEYLAVPVLKGRKTDKEKFAGAKFTLTI-EALMHDGKAL 229

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           + G   +FGT ++      +   DGK  +V   S+G+ + R++ A+I    D +G++ P 
Sbjct: 230 QSGTSHHFGTGFAEAFDINYLDKDGKSQFVHQTSWGL-STRIMGALIMVHGDNRGLVVPP 288

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            +AP +  ++ I  H +   D   ++  +L+KV   V  D   +  G +F   ++ G P+
Sbjct: 289 KIAPTQAMIVPIAQHKEGVLDKAYELRDKLAKV-ARVDIDGSDKMPGWKFNEYEMKGIPV 347

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +V +G K +   +V +  R TG +E + + EV          
Sbjct: 348 RVEMGPKDIEKEQVVLVRRDTGEKEFVPVAEVETRLVELLDE 389


>gi|77409695|ref|ZP_00786360.1| prolyl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77171693|gb|EAO74897.1| prolyl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 549

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 18/207 (8%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             A   D+   K  +  P+ K     ARGIE+GHIF  GT+YS  M A     +G+ + +
Sbjct: 346 FTAEYVDIREVKEGEISPDGKGTLKFARGIEIGHIFKLGTRYSDSMGANILDENGRSNPI 405

Query: 313 QMGSYGIGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQ 359
            MG YGIG  R+++AVIE                   GI +P+ +APF + LI +   DQ
Sbjct: 406 VMGCYGIGVSRILSAVIEQHARLFVNKTPKGAYRFAWGINFPEELAPFDVHLITVNVKDQ 465

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +D  EKI A L   G +V  DD  E++GS+F+ +DL+G P++V VG K  S+  VE+K
Sbjct: 466 ESQDLTEKIEADLMLKGYEVLTDDRNERVGSKFSDSDLIGLPIRVTVGKK-ASEGIVEVK 524

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            + +G   ++  + +I          +
Sbjct: 525 IKASGDTIEVHADNLIETL--EILTKK 549



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/144 (45%), Positives = 89/144 (61%)

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           M  P L +ADLW ESGRY++YG+++ +L +R+    I GPTHEE  T + R  +KSY+ L
Sbjct: 1   MLAPALLTADLWRESGRYETYGEDLYKLKNRDQSDFILGPTHEETFTTLVRDAVKSYKQL 60

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           P   YQIQ K+RDE RPR G++R+REF+MKD YSF    E    +Y     +Y  IF R 
Sbjct: 61  PLNLYQIQSKYRDEKRPRNGLLRTREFIMKDGYSFHKDYEDLDVTYEDYRKAYEAIFTRA 120

Query: 189 GLKSIPMRAESGPIGGDLSHEFIV 212
           GL    +  + G +GG  S EF+ 
Sbjct: 121 GLDFKGIIGDGGAMGGKDSQEFMA 144


>gi|32473557|ref|NP_866551.1| prolyl-tRNA synthetase [Rhodopirellula baltica SH 1]
 gi|81658286|sp|Q7UGJ7|SYP_RHOBA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|32398237|emb|CAD78332.1| prolyl tRNA synthetase [Rhodopirellula baltica SH 1]
          Length = 506

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 144/448 (32%), Gaps = 86/448 (19%)

Query: 27  LRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           +R   + ++S   G     P G +  +NV   + +    TG      P       L  E+
Sbjct: 30  IRAADLAENSPVRGCMVIKPWGYQLWENVQRALDDMFKATGHQNAYFPLFIPMSFLEKEA 89

Query: 84  GRYDSYGKEMLRLADRN---------------DKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
              + + KE   +                   ++ +I  PT E ++   +   ++SYR+L
Sbjct: 90  EHVEGFAKECAVVTHHRLEPDPDGGLRPAGKLEEPLIVRPTSETIIGATYAKWVQSYRDL 149

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           P    Q     R E+R R   +R+ EFL ++ ++   T E +     KM   Y       
Sbjct: 150 PILINQWANVVRWEMRTRM-FLRTAEFLWQEGHTVHATSEEAVEETEKMVEVYR------ 202

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                                                   DF           I+   + 
Sbjct: 203 ----------------------------------------DFAENWMA--MPVIVGSKTP 220

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +E++              +     E      + ++ G   + G  +S      F+   G 
Sbjct: 221 LERFPG-----------AVETLSIEAMMQDRKALQAGTSHFLGQNFSKAQEIKFQSESGD 269

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACE 366
             +    S+G+ + R++ A+I +  D  G++ P  +AP  + +  I   D      +  +
Sbjct: 270 IEFAWTTSWGV-STRLIGALIMTHSDDDGLVLPPRLAPTHVVIQPIYKDDSRAEVMEYVQ 328

Query: 367 KIYARLSK-----VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   L+          V  DD   + G +       G P+++ VG K ++   V    R
Sbjct: 329 SLRDELAAQTYANAPVRVTIDDRDIRGGEKKWYHVKRGVPIRLEVGPKDIAAGTVFCGIR 388

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
                  +   E++     + +  +  L
Sbjct: 389 NQPKSVGIDRAELVATIGEKLATLQQEL 416


>gi|212223522|ref|YP_002306758.1| threonyl-tRNA synthetase [Thermococcus onnurineus NA1]
 gi|229558459|sp|B6YTH4|SYT_THEON RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|212008479|gb|ACJ15861.1| Threonyl-tRNA synthetase [Thermococcus onnurineus NA1]
          Length = 627

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/413 (16%), Positives = 138/413 (33%), Gaps = 43/413 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD---LWVESGRYDSYGKEM 93
            G   + P G+     +   + E+    GA+E+  P +   +   L     R+ +     
Sbjct: 227 PGNLRYYPKGRLIKGLLEQYVTEKVVEYGAMEVETPIMYDFEHPALEKYLNRFPARQ--- 283

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ-IQLKFRDELRPR-FGVMR 151
             +    DK              I +  I SYRNLP   Y+  +  FR E      G+ R
Sbjct: 284 -YIVKSGDKKFFLRFAACFGQFLIKKDAIISYRNLPLRMYELTRYSFRREKSGELSGLRR 342

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F M D ++     + +   + K +   + +   +GL                     
Sbjct: 343 LRAFTMPDMHTVARDLKQAMAEFKKQYKLSMEVLKGVGLTP------------------- 383

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +  E  +  ++DF +        +   II    ++E W   +            D+L
Sbjct: 384 ---EDYEVAIRFTEDFWNEN-RDFIVELAKIIGKPVLIEMWKQRFFYFILKFEFNFVDNL 439

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG--AMRVVAAVI 329
            +   +S   I+V        + +     T+   DGK+ Y  +          RV+ A++
Sbjct: 440 DKAAALSTVQIDV--------ENAERFGITYYDEDGKEKYPLILHCSPSGAIERVMYAIL 491

Query: 330 ESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           E     +          +   +   +    +   D    +  +L      V  DD  +++
Sbjct: 492 EKQAKLQSKGIKPMFPLWLSPIQVRVIPVSEEVLDYALYVAGKLEGAKIRVDVDDTSDRL 551

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             +   A+    P  ++VG      + + ++ R  G + +M LE++I     +
Sbjct: 552 NKKIRKAEKEWIPYVIVVGRNEKEQNTITVRRRSDGKQGEMQLEDLIREIRSQ 604


>gi|39938732|ref|NP_950498.1| prolyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
 gi|81830053|sp|Q6YQX7|SYP_ONYPE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|39721841|dbj|BAD04331.1| prolyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
          Length = 474

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/420 (15%), Positives = 138/420 (32%), Gaps = 60/420 (14%)

Query: 27  LRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESG 84
           L+  +I    +KG   +LP G    +N+   +     +TG   +  P +    L+  E  
Sbjct: 26  LKAELIAYSEAKGFIIYLPYGYALWENIQKHLNCTLQKTGHQNVYFPLVFPEKLFHKEKN 85

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
               +                     E  M         S +                  
Sbjct: 86  HIQGFSP-------------------EAAMITTTGKKNLSEK------------------ 108

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
                                +       Y+K   SY  +          +R E      
Sbjct: 109 ---------------LVIRPTSEILFSQYYSKTITSYRDLPKLYNQWCNVVRWEKTTKPF 153

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               EF+     G T     ++ M   +   +      +  N +   +       ++   
Sbjct: 154 LRGKEFL--WQEGHTVHATEQEAMQQTLSILDIYQ--KLGKNLLALPFVCGKKTETEKFA 209

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             L     E      + ++ G   Y GT ++      F+  D +  YV   S+G+ + R+
Sbjct: 210 GALITYSIEALMHDGQALQAGTSHYLGTNFAKSFQIQFQDCDHQKKYVHQTSWGV-STRL 268

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + A+I    D +G++ P  V+P +I +I ++  D   +   E +++ L K    V  D  
Sbjct: 269 IGALIMVHSDDEGLVLPPYVSPMQIVIIPLQPQDDAVKQTSENLFSILQK-NYRVHLDLQ 327

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +  G +F+  +L G PL++ +G + + + +V I  R    ++++  +++ +     F  
Sbjct: 328 DKTAGWKFSQYELKGVPLRIEIGKRGLENDEVTIFQRYNFAKQNIKTKDLPSQIPQLFET 387


>gi|238498424|ref|XP_002380447.1| prolyl-tRNA synthetase [Aspergillus flavus NRRL3357]
 gi|220693721|gb|EED50066.1| prolyl-tRNA synthetase [Aspergillus flavus NRRL3357]
          Length = 627

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 98/315 (31%), Positives = 153/315 (48%), Gaps = 23/315 (7%)

Query: 2   RRSKYFLPI----------LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALD 51
           R S +++P            +E+  D       L++R G + Q   GI+  LPLG +  D
Sbjct: 40  RVSNFWIPTGGISKKNIQGEKEDVND-------LLVRGGFLRQAYSGIFHMLPLGLRVQD 92

Query: 52  NVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHE 111
            +  +I +     GA ++S+ ++ S +LW  SGR    G E+ +  DR +   +  PTHE
Sbjct: 93  KLERLIDKHMRSVGASKVSLSSISSQELWERSGRLGE-GSEVFKFHDRKESRFLLAPTHE 151

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           E +T +  S  KSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+FD T E + 
Sbjct: 152 EEITTLVGSLAKSYRDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLYTFDCTVEEAL 211

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF----CSKDF 227
            +Y  +  +Y R+F+ L +  +   A+SG +GG+LSHEF V +  GE  V     C   +
Sbjct: 212 ETYTSVKAAYTRLFNDLKIPYLVAAADSGNMGGNLSHEFHVPSSKGEDTVISCTSCDTVY 271

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK-LFDSLPENKRVSARGIEVGH 286
            D     +  +  D  S  +     T   +  +       L+ S+ ++KR   RG     
Sbjct: 272 NDELADGKIHELGDNESHQASPGFDTGDMSPEATPTISTGLWMSISKDKRTLLRGWYPKF 331

Query: 287 IFYFGTKYSLPMSAT 301
                T+  +   A 
Sbjct: 332 SMQGETQEPVEREAN 346



 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 100/193 (51%), Gaps = 15/193 (7%)

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK-------GADGKDHYVQM 314
           V +        + +  +   IE+GH F+ GT+YS  + A+          ++ +   +QM
Sbjct: 437 VQDGDKCAKCAQGRVKTQVAIELGHTFHLGTRYSEVLQASVMVDQSSSGSSEHQVVPMQM 496

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS- 373
           G +GIG  R++ AV +S  D KG+ WP +VAPF++ ++  K  ++      EKIY  L+ 
Sbjct: 497 GCHGIGVSRMITAVADSLADSKGLNWPRAVAPFEVIVVPAKGLEEE----AEKIYDTLTS 552

Query: 374 --KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDMS 430
                 DV  DD  +Q+G +   ADL+G+P+ V+VG  +  +  +E++ R    +RE++ 
Sbjct: 553 DPASPVDVILDDRDKQMGWKLGDADLIGYPIIVVVGKGWKKEQTLEVQCRQLDNLRENVP 612

Query: 431 LEEVINYASHRFS 443
           LE++  +      
Sbjct: 613 LEQLSTFIRSLLE 625


>gi|317155666|ref|XP_001825276.2| prolyl-tRNA synthetase [Aspergillus oryzae RIB40]
          Length = 627

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 97/307 (31%), Positives = 151/307 (49%), Gaps = 23/307 (7%)

Query: 2   RRSKYFLPI----------LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALD 51
           R S +++P            +E+  D       L++R G + Q   GI+  LPLG +  D
Sbjct: 40  RVSNFWIPTGGISKKNIQGEKEDVND-------LLVRGGFLRQAYSGIFHMLPLGLRVQD 92

Query: 52  NVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHE 111
            +  +I +     GA ++S+ ++ S +LW  SGR    G E+ +  DR +   +  PTHE
Sbjct: 93  KLERLIDKHMRSVGASKVSLSSISSQELWERSGRLGE-GSEVFKFHDRKESRFLLAPTHE 151

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           E +T +  S  KSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+FD T E + 
Sbjct: 152 EEITTLVGSLAKSYRDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLYTFDCTVEEAL 211

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF----CSKDF 227
            +Y  +  +Y R+F+ L +  +   A+SG +GG+LSHEF V +  GE  V     C   +
Sbjct: 212 ETYTSVKAAYTRLFNDLKIPYLVAAADSGNMGGNLSHEFHVPSSKGEDTVISCTSCDTVY 271

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK-LFDSLPENKRVSARGIEVGH 286
            D     +  +  D  S  +     T   +  +       L+ S+ ++KR   RG     
Sbjct: 272 NDELADGKIHELGDNESHQASPGFDTGDMSPEATPTISTGLWMSISKDKRTLLRGWYPKF 331

Query: 287 IFYFGTK 293
                T+
Sbjct: 332 SMQGETQ 338



 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 100/193 (51%), Gaps = 15/193 (7%)

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK-------GADGKDHYVQM 314
           V +        + +  +   +E+GH F+ GT+YS  + A+          ++ +   +QM
Sbjct: 437 VQDGDKCAKCAQGRVKTQVAVELGHTFHLGTRYSEVLQASVMVDQSSSGSSEHQVVPMQM 496

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS- 373
           G +GIG  R++ AV +S  D KG+ WP +VAPF++ ++  K  ++      EKIY  L+ 
Sbjct: 497 GCHGIGVSRMITAVADSLADSKGLNWPRAVAPFEVIVVPAKGLEEE----AEKIYDTLTS 552

Query: 374 --KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDMS 430
                 DV  DD  +Q+G +   ADL+G+P+ V+VG  +  +  +E++ R    +RE++ 
Sbjct: 553 DPASPVDVILDDRDKQMGWKLGDADLIGYPIIVVVGKGWKKEQTLEVQCRQLDNLRENVP 612

Query: 431 LEEVINYASHRFS 443
           LE++  +      
Sbjct: 613 LEQLSTFIRSLLE 625


>gi|307178487|gb|EFN67176.1| Bifunctional aminoacyl-tRNA synthetase [Camponotus floridanus]
          Length = 1504

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 132/434 (30%), Gaps = 76/434 (17%)

Query: 28   RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
            ++GMI  +   G Y   P        +   I +E    G  E   P   +   L  E   
Sbjct: 1020 KSGMIEYYDVSGCYILRPWSFAIWKIIKEYIDKEITALGVQECYFPIFVTRGVLEKEKTH 1079

Query: 86   YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
               +  E+  +    +  +       PT E VM   +   ++S   LP    Q     R 
Sbjct: 1080 ITDFAPEVAWVTKCGESDLAEPVAIRPTSETVMYPAYAKWLRSDTELPLRLNQWNNVVRW 1139

Query: 142  ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            E +     +R+REFL ++ +S                                       
Sbjct: 1140 EFKDPKPFLRTREFLWQEGHSA-------------------------------------- 1161

Query: 202  IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATS 260
                    F   A+  E  +     +    +  +      I    +  E++    Y  T 
Sbjct: 1162 --------FATKAEADEEVLIILDIYAK--VYEDLLAVPVIKGRKTEKEKFPGGDYTTTV 1211

Query: 261  DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            +                S R I+     + G  +S   +   +G    D    +     G
Sbjct: 1212 EAFIS-----------TSGRAIQGATSHHLGQNFSKMFNIQVEGIAEGDEKTFVYQNSWG 1260

Query: 321  -AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-------HDQVCRDACEKIYARL 372
               R +  +I    D KG++ P  +A  +  +I             ++ +  C K+   L
Sbjct: 1261 LTTRTIGVMIMVHGDDKGLVLPPCIASIQGIVIPCGITANMSTIEKELLQSECVKLVDEL 1320

Query: 373  SK-VGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            SK     V  D    +  G +F   +L G P+++ +G K +  ++V    R    R  ++
Sbjct: 1321 SKVSKFRVKGDFRNNRTPGWKFNHWELKGVPVRIELGPKDMKKNQVTFVRRDNLQRTTVN 1380

Query: 431  LEEVINYASHRFSN 444
             + V         +
Sbjct: 1381 RDTVAASLDCLLKD 1394


>gi|320582734|gb|EFW96951.1| prolyl-tRNA synthetase, putative [Pichia angusta DL-1]
          Length = 536

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 100/502 (19%), Positives = 186/502 (37%), Gaps = 87/502 (17%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           +P  +     A++ + +L+++ G + Q + G+  WLPLG   + N+  IIR+  ++ G  
Sbjct: 12  VPTGKLAKNIADLTTTELLMKAGYVSQPNAGLTHWLPLGLSTIRNIEEIIRKHHDKAGCQ 71

Query: 68  EMSVPTLQSADLWVESGRYDSYG--------------KEMLRLADRNDKAMIYGPTHEEV 113
           E+S+  +    LW ++GR+ +                +EM +L  R   +    P     
Sbjct: 72  EVSLSVMSHQSLWDKTGRWQNDELFKVGDFCLAATAEEEMTQLVQRTADSYKKLPVIAYQ 131

Query: 114 MTDIFRSHIKSYRNL-PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF--------- 163
           +   +R+  +    L     + ++  +  ++     +    +        F         
Sbjct: 132 IGRKYRNEKRPRGGLLRGREFVMKDAYSFDVDQSSALRSFEKMNQVYYDIFKELNVPFVK 191

Query: 164 ---DLTPEGSKHSYNKMF-----VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE----FI 211
              D    G   SY   F        L      G+     R       G  + E    + 
Sbjct: 192 ANADSGAIGGDLSYEWHFLSESGEDTLLECDACGVVGNVERVRPHITEGHFADEAEVSYH 251

Query: 212 VLADTGETQVFCSK--------------------DFMDFPIPSENTDFDDI--------- 242
           +  +     ++  K                       +  + +     DD          
Sbjct: 252 LTRENDLCLIYYPKGRTVNFKFLKDEDLVELRTDISSEEAVQTYKRSGDDEFRNIIRIMD 311

Query: 243 --ISLNSIVEQWTAPYAATSDVHNEKL----------FDSLPENKRVSARGIEVGHIFYF 290
             +   +++      Y+ +     E +                 K  S +GIEVGH FY 
Sbjct: 312 VGVGPGTLLPDLEVAYSRSRMTTFEGVPLTEAQAGDGCALCEAGKLKSFKGIEVGHTFYL 371

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           G +YS P+ A F  ++G+  + +MG YGIG  R+VAA+ E + D  G+ WP SVAP ++ 
Sbjct: 372 GKRYSEPLDAGFVDSEGRRQHYEMGCYGIGVSRLVAAIAEVTRDADGLRWPASVAPIQVD 431

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++   ++        EK  ++L   G     D     +G + A +  LG PLQVI+G ++
Sbjct: 432 IVVAGSYTGDLGAV-EKFCSQLD--GLRYRVDATEGHLGEKLARSKRLGTPLQVIIGKQY 488

Query: 411 --VSDSKVEIK--HRLTGIRED 428
             +    +E++   R  G  E 
Sbjct: 489 PKIE---IELRGLRRDLGKLES 507


>gi|6320931|ref|NP_011010.1| Aim10p [Saccharomyces cerevisiae S288c]
 gi|731489|sp|P39965|SYPM_YEAST RecName: Full=Probable prolyl-tRNA synthetase, mitochondrial;
           AltName: Full=Altered inheritance rate of mitochondria
           protein 10; AltName: Full=Proline--tRNA ligase;
           Short=ProRS
 gi|603325|gb|AAB64642.1| Yer087wp [Saccharomyces cerevisiae]
 gi|285811719|tpg|DAA07747.1| TPA: Aim10p [Saccharomyces cerevisiae S288c]
          Length = 576

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 161/346 (46%), Gaps = 6/346 (1%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWV 81
            +L+   G + +   G++ WLPLG ++L+ V+  IR   +  G AIE+S+  + S  LW 
Sbjct: 30  QELLQTVGFVRRSQVGLFQWLPLGLRSLNKVSNAIRNRMDSDGGAIEVSLSAISSKALWQ 89

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + R+++   E+ +L D   K      T EE +TD+ +++I SY+++P T YQ+  K+RD
Sbjct: 90  ATDRWNN--SELFKLKDSKGKQYCLTATCEEDITDLMKNYIASYKDMPITIYQMTRKYRD 147

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E+RPR G++R REFLMKDAYSF    E +  S+ K+  +Y +IF  L +  +   A+SG 
Sbjct: 148 EIRPRGGILRGREFLMKDAYSFASNEEDAFASFQKLDDTYNKIFKDLKIPFVSAWADSGD 207

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           IGG+ S EF ++ ++GE  +   K   D      +  + +     S        YA T D
Sbjct: 208 IGGEFSKEFHLIHESGEDTLMSCKHCGDISTLDMSQSYPEKDGQYSG--DVDCKYALTKD 265

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            H+  +    P++++++                    +        KD+   M S  +  
Sbjct: 266 -HSTLICFYYPKDRQLNWNLALNAMDKDIDLTLRNKPNDHVLQVYEKDNEDIMFSKILRV 324

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           M        +  D     +  +       +  + A +      CE+
Sbjct: 325 MDCRLNSKSNFPDFPLKKYLKNNFGQISDVSIVDAQENEICGKCEE 370



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 106/310 (34%), Gaps = 23/310 (7%)

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
                 +       +   +   +    +    +                + +    +  +
Sbjct: 225 DTLMSCKHCGDISTLDMSQSYPEKDGQYSGDVDCKYALTKDHSTLICFYYPKDRQLNWNL 284

Query: 196 RAESGPIGGDL------SHEFIVLADTGETQVFCSKDF--MDFPIPSENTDFDDIISLNS 247
              +     DL      +   + + +     +  SK    MD  + S++   D  +    
Sbjct: 285 ALNAMDKDIDLTLRNKPNDHVLQVYEKDNEDIMFSKILRVMDCRLNSKSNFPDFPLKKYL 344

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-AD 306
                     +  D    ++     E +    + IEVGHIF  G KYS P++  F    +
Sbjct: 345 KNNFGQISDVSIVDAQENEICGKCEEGRLEPLKSIEVGHIFLLGNKYSKPLNVKFVDKEN 404

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
             + +V MG YGIG  R+V A+ E   D  G  W  ++       I    ++       +
Sbjct: 405 KNETFVHMGCYGIGVSRLVGAIAELGRDSNGFRW-PAIMAPYKVSICTGPNNPENSQRLQ 463

Query: 367 KIYARLS--------KVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            + + L         +       D   E+  IG++  ++  +G PL VIVGSK   + ++
Sbjct: 464 DVKSELLNDPTMQNLQNDI---LDQFNEKLGIGARIKLSHAMGIPLCVIVGSKSWPNVEI 520

Query: 417 EIKHRLTGIR 426
           E++    G +
Sbjct: 521 EVRGIRWGEK 530


>gi|225166272|ref|ZP_03727969.1| prolyl-tRNA synthetase [Opitutaceae bacterium TAV2]
 gi|224799485|gb|EEG18017.1| prolyl-tRNA synthetase [Opitutaceae bacterium TAV2]
          Length = 296

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 64/185 (34%), Positives = 91/185 (49%), Gaps = 2/185 (1%)

Query: 261 DVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D    +  +  P         RGIEVGHIF  GTKYS   +A +     + H + MG YG
Sbjct: 96  DFRTVRPGEPCPVSGQPLQVRRGIEVGHIFKLGTKYSEKFNALYTDDQKQQHPMVMGCYG 155

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R + A+IE  HD  GIIWP + APF++ +  +   D       EK+ A   + G D
Sbjct: 156 IGISRTLQAIIEQCHDADGIIWPWACAPFQVLVTVLDPQDATVAALAEKLAAAAERAGAD 215

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E+ G +F  ADL+G PL++ VG K + D  +E+K R       + + E   + 
Sbjct: 216 VLLDDRTERPGVKFKDADLIGIPLRITVGGKGIKDGIIELKWRTKKEVSRIPVGEAETHL 275

Query: 439 SHRFS 443
           +    
Sbjct: 276 AEAVR 280


>gi|151944803|gb|EDN63062.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|190405650|gb|EDV08917.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
 gi|259146006|emb|CAY79266.1| EC1118_1E8_2102p [Saccharomyces cerevisiae EC1118]
          Length = 576

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 161/346 (46%), Gaps = 6/346 (1%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWV 81
            +L+   G + +   G++ WLPLG ++L+ V+  IR   +  G AIE+S+  + S  LW 
Sbjct: 30  QELLQTVGFVRRSQVGLFQWLPLGLRSLNKVSNAIRNRMDSDGGAIEVSLSAISSKALWQ 89

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + R+++   E+ +L D   K      T EE +TD+ +++I SY+++P T YQ+  K+RD
Sbjct: 90  ATDRWNN--SELFKLKDSKGKQYCLTATCEEDITDLMKNYIASYKDMPITIYQMTRKYRD 147

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E+RPR G++R REFLMKDAYSF    E +  S+ K+  +Y +IF  L +  +   A+SG 
Sbjct: 148 EIRPRGGILRGREFLMKDAYSFASNEEDAFASFQKLDDTYNKIFKDLKIPFVSAWADSGD 207

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           IGG+ S EF ++ ++GE  +   K   D      +  + +     S        YA T D
Sbjct: 208 IGGEFSKEFHLIHESGEDTLMSCKHCGDISTLDMSQSYPEKDGQYSG--DVDCKYALTKD 265

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            H+  +    P++++++                    +        KD+   M S  +  
Sbjct: 266 -HSTLICFYYPKDRQLNWNLALNAMDKDIDLTLRNKPNDHVLQVYEKDNEDIMFSKILRV 324

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           M        +  D     +  +       +  + A +      CE+
Sbjct: 325 MDCRLNSKSNFPDFPLKKYLKNNFGQISDVSIVDAQENEICGKCEE 370



 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 107/310 (34%), Gaps = 23/310 (7%)

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
                 +       +   +   +    +    +                + +    +  +
Sbjct: 225 DTLMSCKHCGDISTLDMSQSYPEKDGQYSGDVDCKYALTKDHSTLICFYYPKDRQLNWNL 284

Query: 196 RAESGPIGGDL------SHEFIVLADTGETQVFCSKDF--MDFPIPSENTDFDDIISLNS 247
              +     DL      +   + + +     +  SK    MD  + S++   D  +    
Sbjct: 285 ALNAMDKDIDLTLRNKPNDHVLQVYEKDNEDIMFSKILRVMDCRLNSKSNFPDFPLKKYL 344

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-AD 306
                     +  D    ++     E +    + IEVGHIF  G KYS P++  F    +
Sbjct: 345 KNNFGQISDVSIVDAQENEICGKCEEGRLEPLKSIEVGHIFLLGNKYSKPLNVKFVDKEN 404

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
             + +V MG YGIG  R+V A+ E   D  G  W  ++       I    ++       +
Sbjct: 405 KNETFVHMGCYGIGVSRLVGAIAELGRDSNGFRW-PAIMAPYKVSICTGPNNPENSQRLQ 463

Query: 367 KIYARLS--------KVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            + ++L         +       D   E+  IG++  ++  +G PL VIVGSK   + ++
Sbjct: 464 DVKSKLLNDPTMQNLQNDI---LDQFNEKLGIGARIKLSHAMGIPLCVIVGSKSWPNVEI 520

Query: 417 EIKHRLTGIR 426
           EI+    G +
Sbjct: 521 EIRGIRWGEK 530


>gi|194910075|ref|XP_001982069.1| GG12386 [Drosophila erecta]
 gi|190656707|gb|EDV53939.1| GG12386 [Drosophila erecta]
          Length = 1712

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 123/422 (29%), Gaps = 73/422 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y            +      E  R G  E   P   S   L  E      +  E+  
Sbjct: 1243 SGCYILRQWSFAIWKAIKTWFDAEITRMGVKECYFPIFVSKAVLEKEKTHIADFAPEVAW 1302

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    D  +       PT E VM   +   ++SYR+LP    Q     R           
Sbjct: 1303 VTKSGDSDLAEPIAVRPTSETVMYPAYAKWVQSYRDLPIRLNQWNNVVR----------- 1351

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
              EF                         +LR    L  +     A+      + + E +
Sbjct: 1352 -WEFKQPT--------------------PFLRTREFLWQEGHTAFADKE----EAAKEVL 1386

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             + D     +  +       +    T+ +               Y  T +          
Sbjct: 1387 DILD--LYALVYTHLLAIPVVKGRKTEKEKFA---------GGDYTTTVEAFISA----- 1430

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                  S R I+     + G  +S      ++  + +       +      R +  +I  
Sbjct: 1431 ------SGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVYQNSWGITTRTIGVMIMV 1484

Query: 332  SHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYARLSKVGCDVFWDDM 384
              D +G++ P  VA  +  ++     +   D       DAC+ +  RL   G     D  
Sbjct: 1485 HADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKDLEKRLVGGGVRCEGDYR 1544

Query: 385  GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRF 442
                 G +F   +L G PL++ VG K +   + V ++ R TG +  + L +V    +   
Sbjct: 1545 DNYSPGWKFNHWELKGVPLRLEVGPKDLKAKQLVAVR-RDTGEKITIPLADVEKKIAALL 1603

Query: 443  SN 444
              
Sbjct: 1604 ET 1605


>gi|242398481|ref|YP_002993905.1| Threonyl-tRNA synthetase [Thermococcus sibiricus MM 739]
 gi|259516775|sp|C6A1R1|SYT_THESM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|242264874|gb|ACS89556.1| Threonyl-tRNA synthetase [Thermococcus sibiricus MM 739]
          Length = 625

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 64/413 (15%), Positives = 134/413 (32%), Gaps = 43/413 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD---LWVESGRYDSYGKEM 93
            G   + P G+     +   + ++    GA+E+  P +   +   L     R+ +     
Sbjct: 225 PGNLRYYPKGRLIKSLLENYVTDKVIEYGAMEVETPIMYDFEHPALEKYLNRFPARQ--- 281

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF--RDELRPRFGVMR 151
             +    DK              I +    SYR+LP   Y++      R++     G+ R
Sbjct: 282 -YVVKSGDKRFFLRFAACFGQFLIKKDATISYRHLPLRMYELTRYSFRREKRGELSGLRR 340

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F M D ++     + +   + K +   + +   +GL                     
Sbjct: 341 LRAFTMPDMHTVAKNLQQAMEEFKKQYKLSMEVLKGVGLTP------------------- 381

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +  E  +  ++DF +        D   II    ++E W   +            D+L
Sbjct: 382 ---EDYEVAIRFTEDFWNEN-KDFIVDLAGIIGKPVLIEMWKQRFFYFILKFEFNFVDNL 437

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG--AMRVVAAVI 329
            +   +S   I+V +   FG         T+   +G++ Y  +          RV+ A++
Sbjct: 438 DKAAALSTVQIDVENSQRFG--------ITYYDEEGQEKYPLLLHCSPSGAIERVMYAIL 489

Query: 330 ESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           E                +   +   I    +   D    I  +L         DD  E++
Sbjct: 490 EKQAKIMKKGKKPMYPLWLSPIQVRIIPVSEKYLDYALYIAGKLEGAKIRADVDDRNERL 549

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             +   A+    P  ++VG        + ++ R    + ++ +E++I     +
Sbjct: 550 NKKIREAEKEWIPYIIVVGENEKRMGVITVRKREDNKQYEIQVEDLIKEIRQK 602


>gi|18977723|ref|NP_579080.1| threonyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
 gi|22654114|sp|Q8U176|SYT_PYRFU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|18893458|gb|AAL81475.1| threonyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
          Length = 625

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 73/437 (16%), Positives = 144/437 (32%), Gaps = 46/437 (10%)

Query: 16  RDAEIASHKLMLRTGMIHQH---SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            D E    +LML   ++        G   + P G+     +   + E+    GA+E+  P
Sbjct: 201 ADKEPPHVRLMLEHELVDYEPGSDPGNLRYYPKGRLIKSLLEQYVSEKVIEYGAMEVETP 260

Query: 73  TLQSAD---LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            +   +   L     R+ +       +    DK              I +    SYRNLP
Sbjct: 261 IMYDFEHPALEKYLNRFPARQ----YIVLSGDKRYFLRFAACFGQFMISKDATISYRNLP 316

Query: 130 FTFYQIQLKF--RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
              Y++      R++     G+ R R F M D ++     E +K  + K F   + +   
Sbjct: 317 LRMYELTRYSFRREKRGELSGLRRLRAFTMPDMHTLAKDIEQAKDEFKKQFKLSMEVLGG 376

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           +GL                        D  E  +  ++DF +        +   +I    
Sbjct: 377 VGLTP----------------------DDYEVAIRFTEDFWNEH-KDFIIELVKLIGKPV 413

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
           ++E W   +            D+L +   +S   I+V        + +     T+   +G
Sbjct: 414 LIEMWKQRFFYFILKFEFNFVDNLDKAAALSTVQIDV--------ENAERFGITYYDENG 465

Query: 308 KDHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDA 364
           ++ Y  +          RV+ A++E                +   +   +    +   D 
Sbjct: 466 EEKYPLILHCSPSGAIERVMYAILEKQAKLMQEGKKPMFPLWLSPIQVRVIPVSKEYLDY 525

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +  ++      V  DD  E++  +   A+    P  V+VG K      + ++ R  G
Sbjct: 526 ALYVAGKIEGARIRVDVDDEDERLSKKIRRAEKEWIPYIVVVGEKEKETGTITVRRREDG 585

Query: 425 IREDMSLEEVINYASHR 441
            + +  +EE+I     +
Sbjct: 586 KQYETRIEELIKEIKQK 602


>gi|330836946|ref|YP_004411587.1| glycyl-tRNA synthetase [Spirochaeta coccoides DSM 17374]
 gi|329748849|gb|AEC02205.1| glycyl-tRNA synthetase [Spirochaeta coccoides DSM 17374]
          Length = 444

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 61/440 (13%), Positives = 128/440 (29%), Gaps = 36/440 (8%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADL 79
           R G I Q S       G Y + P+G +  +N+     +E  +     + +    L    +
Sbjct: 15  RRGFIFQSSEIYGGLSGAYDYGPMGVELKNNIRDFWWKEMTQLHDDIVGLDASILMHPRV 74

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG   ++   M+   D       +     ++         K     P  F  +    
Sbjct: 75  WEASGHVSNFTDPMV---DCKQCKSRFRADQIDLSAPCPVCGTKGSFTEPRNFNLMFQSH 131

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
                    V+  R    +  Y         K+      V       ++G          
Sbjct: 132 IGANTDSSSVVYLRPETAQGIY------VDFKNVVQSSRVKVPFGIAQIGKSFRNEITTK 185

Query: 200 GPIGGDLSHEFIVLADTG----ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
             I      E + +        E + F                  + +  +       A 
Sbjct: 186 NFIFRSCEFEQMEMQFFCKPGTEDEWFPYWRGQRMDFYIRMGIRPESLRWHQHGPDELAF 245

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           YA  +            E + V +R             +S    +         +   + 
Sbjct: 246 YAKDAYDIQFLFPMGWQELEGVHSRTDYDLSQHQT---FSGKDQSYLDPETNDRYIPYVV 302

Query: 316 SYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACE 366
               G  R V   +  ++D + I          +  ++AP K++++ +   D    +  +
Sbjct: 303 ETSAGLTRNVLMALSDAYDEEEIAPGDVRTVLHFHPAIAPVKVAVLPLVKKD-GLDEYAQ 361

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+   L +    VF+D     IG ++   D +G P  V V  + + D+ V ++ R +  +
Sbjct: 362 KLEKELRE-DYTVFFD-RSGAIGRRYRRQDEIGTPYCVTVDYQTLEDNTVTLRFRDSMEQ 419

Query: 427 EDMSLEEVINYASHRFSNNR 446
             + +  +         + +
Sbjct: 420 VRVPVAGIAARIKQEMKDYK 439


>gi|268576408|ref|XP_002643184.1| C. briggsae CBR-PRS-1 protein [Caenorhabditis briggsae]
 gi|187040442|emb|CAP20827.1| CBR-PARS-1 protein [Caenorhabditis briggsae AF16]
          Length = 579

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/428 (15%), Positives = 122/428 (28%), Gaps = 69/428 (16%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ-SADLWVESGR 85
           +  MI  +   G Y   P      + + A       + G      P    +A L  E   
Sbjct: 107 KAEMIEYYDVSGCYVLRPWSFAVWEAIQAWFDSGIKKLGVKNCYFPMFVSNAALEREKTH 166

Query: 86  YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
              +  E+  +       M       PT E VM   ++  ++S+R+LP    Q     R 
Sbjct: 167 IADFAPEVAWVTRAGQSEMAEPIAIRPTSETVMYPSYKKWVQSHRDLPIKLNQWCNVVRW 226

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +R                                               +  
Sbjct: 227 EFKHPTPFLR-----------------------------------------------TRE 239

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                 H         E +VF   D                   +   +     +  T +
Sbjct: 240 FLWQEGHTAFANPSDAEKEVFQILDLYAGVYNDLLAIPVVKGRKSEKEKFAGGDFTTTVE 299

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG- 320
            +              + RGI+     + G  +S     +++    +           G 
Sbjct: 300 AYVA-----------CNGRGIQGATSHHLGQNFSKMFDISYEDPAKEGERAFAWQNSWGL 348

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGC 377
           + R + A++    D KG+I P  VA  ++ ++ +    +      DA +K+   L   G 
Sbjct: 349 STRTIGAMVMIHGDDKGLILPPRVAAVQVIVVPVGFKTENKEWLFDAVDKVTKDLVAGGI 408

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               D       G +F   +L G P++  VG   ++ ++V    R  G +  MSL+ +  
Sbjct: 409 KAEHDLRENYNAGWKFNHWELKGVPIRFEVGPNDLAKNQVTAVIRHNGEKRQMSLDGLSE 468

Query: 437 YASHRFSN 444
                   
Sbjct: 469 AVKTLLDE 476


>gi|71024203|ref|XP_762331.1| hypothetical protein UM06184.1 [Ustilago maydis 521]
 gi|46101855|gb|EAK87088.1| hypothetical protein UM06184.1 [Ustilago maydis 521]
          Length = 735

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 82/254 (32%), Positives = 128/254 (50%), Gaps = 14/254 (5%)

Query: 2   RRSKYFLPILQENP-----------RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKAL 50
           R S +F P  + +             D  + S +L++R G +   S GI++ LP   + +
Sbjct: 46  RLSTHFSPTQKASQSSSPSCVSSACNDDPLPSLQLLVRGGYVRSSSSGIFTLLPNALRIV 105

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
             +  II E+     A  +++P L  + LW ++GRY   G E+ +L DR +   + GPTH
Sbjct: 106 GKITNIIDEQLCAIHASRIAMPNLLPSKLWHQTGRYTVMGSELYKLRDRKNSEFVLGPTH 165

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
           EE +T +  + + S R LP   YQI  KFRDE RPR G++R++EFLMKD YSFD +   +
Sbjct: 166 EEEITKLVANQVDSDRQLPLRLYQITTKFRDEPRPRMGLLRTKEFLMKDLYSFDKSAADA 225

Query: 171 KHSYNKMFVSYLRIFHRLG---LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             +Y ++  +Y RIF R+     +     A++G IGG+ SHE+ V    GE  +      
Sbjct: 226 NTTYEEVRAAYARIFDRIFGVDGRWTAAEADTGAIGGNKSHEYHVKDPAGEDTLISCSRC 285

Query: 228 MDFPIPSENTDFDD 241
                  +     D
Sbjct: 286 AYTANTEKAVSMPD 299



 Score = 46.3 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 28/45 (62%)

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           ++  DD    +GS+ A +DL G+  ++IVG  F + +K+E+++  
Sbjct: 674 EIVIDDRTSTLGSKLADSDLTGYAYRIIVGKHFTAQAKLELQYMG 718


>gi|256271449|gb|EEU06503.1| YER087W-like protein [Saccharomyces cerevisiae JAY291]
          Length = 576

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 161/346 (46%), Gaps = 6/346 (1%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWV 81
            +L+   G + +   G++ WLPLG ++L+ V+  IR   +  G AIE+S+  + S  LW 
Sbjct: 30  QELLQTVGFVRRSQVGLFQWLPLGLRSLNKVSNAIRNRMDSDGGAIEVSLSAISSKALWQ 89

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + R+++   E+ +L D   K      T EE +TD+ +++I SY+++P T YQ+  K+RD
Sbjct: 90  ATDRWNN--SELFKLKDSKGKQYCLTATCEEDITDLMKNYIASYKDMPITIYQMTRKYRD 147

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E+RPR G++R REFLMKDAYSF    E +  S+ K+  +Y +IF  L +  +   A+SG 
Sbjct: 148 EIRPRGGILRGREFLMKDAYSFASNEEDAFASFQKLDDTYNKIFKDLKIPFVSAWADSGD 207

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           IGG+ S EF ++ ++GE  +   K   D      +  + +     S        YA T D
Sbjct: 208 IGGEFSKEFHLIHESGEDTLMSCKHCGDISTLDMSQSYPEKDGQYSG--DVDCKYALTKD 265

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            H+  +    P++++++                    +        KD+   M S  +  
Sbjct: 266 -HSTLICFYYPKDRQLNWNLALNAMDKDIDLTLRNKPNDHVLQVYEKDNEDIMFSKILRV 324

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           M        +  D     +  +       +  + A +      CE+
Sbjct: 325 MDCRLNSKSNFPDFPLKKYLKNNFGQISDVSIVDAQENEICGKCEE 370



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 107/310 (34%), Gaps = 23/310 (7%)

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
                 +       +   +   +    +    +                + +    +  +
Sbjct: 225 DTLMSCKHCGDISTLDMSQSYPEKDGQYSGDVDCKYALTKDHSTLICFYYPKDRQLNWNL 284

Query: 196 RAESGPIGGDL------SHEFIVLADTGETQVFCSKDF--MDFPIPSENTDFDDIISLNS 247
              +     DL      +   + + +     +  SK    MD  + S++   D  +    
Sbjct: 285 ALNAMDKDIDLTLRNKPNDHVLQVYEKDNEDIMFSKILRVMDCRLNSKSNFPDFPLKKYL 344

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-AD 306
                     +  D    ++     E +    + IEVGHIF  G KYS P++  F    +
Sbjct: 345 KNNFGQISDVSIVDAQENEICGKCEEGRLEPLKSIEVGHIFLLGNKYSKPLNVKFVDKEN 404

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
             + +V MG YGIG  R+V A+ E   D  G  W  ++       I    ++       +
Sbjct: 405 KNETFVHMGCYGIGVSRLVGAIAELGRDSNGFRW-PAIMAPYKVSICTGPNNPENSQRLQ 463

Query: 367 KIYARLS--------KVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            + ++L         +       D   E+  IG++  ++  +G PL VI+GSK   + ++
Sbjct: 464 DVKSKLLNDPTMQNLQNDI---LDQFNEKLGIGARIKLSHAMGIPLCVIIGSKSWPNVEI 520

Query: 417 EIKHRLTGIR 426
           EI+    G +
Sbjct: 521 EIRGIRWGEK 530


>gi|312194258|ref|YP_004014319.1| prolyl-tRNA synthetase [Frankia sp. EuI1c]
 gi|311225594|gb|ADP78449.1| prolyl-tRNA synthetase [Frankia sp. EuI1c]
          Length = 468

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 60/409 (14%), Positives = 115/409 (28%), Gaps = 59/409 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A +       GA+    P       L  E+   + +  E+  +
Sbjct: 32  GSMVIRPYGYSLWERMQADVDARIKAAGAVNAYFPLFIPESYLRREAEHVEGFSPELAVV 91

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                K +                                                    
Sbjct: 92  THGGGKELEEPVVVRP-------------------------------------------- 107

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +         K   SY  +   L   +  +R E  P     + EF+     
Sbjct: 108 --------TSETVIGEYMAKWTQSYRDLPLLLNQWANVVRWELRPRLFLRTSEFL--WQE 157

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T      D   +        + D +     +  +                 +  E   
Sbjct: 158 GHTAHADGPDAAAYARRIALEVYQDFMVSVLAMPVFVGRKTRKERFAGAINTLTC-EGMM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + +++      G  ++      + GADG  H     S+G  + R+V  +I +  D  
Sbjct: 217 GDGKALQMATSHELGQNFARAFDIDYLGADGARHLAWTTSWGS-STRMVGGLIMAHGDDA 275

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
           G+  P  +AP ++ ++ ++  D+       +I   L   G     D   G   G +    
Sbjct: 276 GLRVPPRLAPTQVVVLPVRD-DEKVVATATQIADALKAAGVRATLDARPGLSFGRRVTDW 334

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +L G P++V VG + ++   V +  R TG +  + L E          +
Sbjct: 335 ELKGAPVRVEVGPRDLAVGNVTLARRDTGEKITVPLAEAAARVPALLDD 383


>gi|320031958|gb|EFW13915.1| prolyl-tRNA synthetase [Coccidioides posadasii str. Silveira]
          Length = 668

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 90/242 (37%), Positives = 125/242 (51%), Gaps = 2/242 (0%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK ++PI       A   S  L+++ G I Q   GIY  LPLG +    +  +I +    
Sbjct: 43  SKIWVPIAPVPKNLAAQDSTALLVQAGFIRQAYAGIYHLLPLGLRVQKKLENLIDKHMES 102

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA ++ +  L S  LW  SGR      E+ R  DR +   +  PTHEE +T +      
Sbjct: 103 LGASKLFLSALSSQLLWKLSGRLHD-DSEVFRFLDRKNAPFLLAPTHEEEITKLVGGLTN 161

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY+ LP   YQI  K+RDE RPR G++R+REFLMKD Y+FD + E +  SYN +  +Y+R
Sbjct: 162 SYKELPLRVYQISRKYRDERRPRQGLLRAREFLMKDLYTFDYSTEEAMKSYNSVKEAYVR 221

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFDDI 242
           +F  L L  I   A+SG +GG+L+HEF +    GE  V  CSK    F     +      
Sbjct: 222 LFDELKLPYIVAAADSGNMGGNLNHEFHLENSKGEDIVVSCSKCNYKFNEELTDGHASKF 281

Query: 243 IS 244
            S
Sbjct: 282 AS 283



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 21/194 (10%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-------------KGADGKDHYVQM 314
                +    +   IE+GH F  GT+YS P+ AT              K +      +QM
Sbjct: 478 CSKCEDGVVTTHTTIEMGHTFLLGTRYSSPLQATVAIDPAKSVNADGAKESPKSVVPLQM 537

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R++AAV +   D +G+ WP ++APF   ++   A  +      +KIY  ++ 
Sbjct: 538 GCYGIGVSRMIAAVADILADSRGLNWPRAMAPFSAIIVPGLAFQED----SKKIYDHIAS 593

Query: 375 --VG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDMS 430
              G  D   DD  + +  +   ADL G P+  +VG  +     VE++ R    +R D+S
Sbjct: 594 YHNGSIDTILDDREQPLIRKLKDADLTGIPVICVVGKSWERHRNVEVQCRRLNNLRTDVS 653

Query: 431 LEEVINYASHRFSN 444
           L+E+ ++ S     
Sbjct: 654 LDELPSFISSLLDK 667


>gi|145593399|ref|YP_001157696.1| tRNA synthetase, class II (G, H, P and S) [Salinispora tropica
           CNB-440]
 gi|145302736|gb|ABP53318.1| tRNA synthetase, class II (G, H, P and S) [Salinispora tropica
           CNB-440]
          Length = 405

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/410 (14%), Positives = 122/410 (29%), Gaps = 40/410 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           D       L L T      +  G+  WLP G  A   V   +R+ + + G   +  P L 
Sbjct: 3   DHRRLGRDLGLFT--SDPLAGAGLPLWLPAGAAARHAVEEYLRDLERQAGYQHVVTPPLG 60

Query: 76  SADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             +L+  SG  D + +EM        D  ++  P+       ++R   +S+R+LP    +
Sbjct: 61  RRELFERSGHLDHFAEEMFPPMRLSADDELVLRPSLCPHHALVYRCRGRSWRDLPLRIAE 120

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +   +R E     G +     +  +        E       ++          LG++   
Sbjct: 121 MGGMYRAERSGVLGGLARVRAISLNDAHNFCALEQVGAEVAEILRLIRVAHAALGVRPAG 180

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            R      G                +    +D             D      +      A
Sbjct: 181 FRLSLRGSG---------------QRYVGEEDDWARAEELLRAALD--GVEYTEDVGAAA 223

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ- 313
            Y    D+  E   D+      +S   ++                 ++  + G       
Sbjct: 224 FYGPKIDIQVE---DAAGREWTLSTVQLDF--------DKPERFDLSYIDSGGARRRPVL 272

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +    +G+M  + + +   H+G   +W   V    + +   +        A  +     +
Sbjct: 273 VHRSLVGSMERLFSYLIEVHEGAFPVWYAPVQLVVLPVAAAQDGAADEVVAAARAAGLRA 332

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           +V       D    +G +   A     P   +VG +  +   V ++ R  
Sbjct: 333 EV-------DRSGSLGGRIRDAAQARIPYVAVVGPREAAAGHVLLRLRDG 375


>gi|170290808|ref|YP_001737624.1| prolyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174888|gb|ACB07941.1| prolyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 479

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 66/409 (16%), Positives = 142/409 (34%), Gaps = 58/409 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+Y WLP G + ++N+ +I+     +TG   +  P++    +     R+    ++ +   
Sbjct: 38  GMYVWLPYGYELMENIMSIMERLLRQTGHKRVYFPSIVPESVLSREFRFIKGFQDSVFWI 97

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
            +                                        R +   +  +  + E +M
Sbjct: 98  TKLG--------------------------------------RQDAPEKLALRPTSEAIM 119

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            +  S  ++                R   +     + +R           H F    +  
Sbjct: 120 YEVLSRWISSYRDLPIRIYQIAPIYRYETKATRPMLRVR---EVAFFKEGHTFHATYEEA 176

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             QV                 +  + +L      W     A   ++N  +   +P+ K  
Sbjct: 177 VEQVNLEVWIYKSFYDELLVPYIVVKTLP-----WDTFPGA---LYNYDIVTIMPDGK-- 226

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
               +E+G    FG  ++     T+   DG+   V   S+GI + R +AAVI    D +G
Sbjct: 227 ---ALELGSAINFGDLFARTYDLTYMDEDGQRKNVNTTSFGI-SERSLAAVIAIHGDDRG 282

Query: 338 IIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           +  P  +AP +I ++ I   D  +   +   ++ + L +    V  D+  E+ G +F   
Sbjct: 283 LRLPPKIAPIQIVIVPIPTKDYEERIMEYSREVKSTLERS-FRVHLDESEERPGYKFYKW 341

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G P+++ +G   +   +V +  R    RE + ++++    S    +
Sbjct: 342 EMKGVPIRIEIGRNELERREVTVFRRDKMEREAIPIDKLNERISEILKD 390


>gi|322789351|gb|EFZ14663.1| hypothetical protein SINV_09736 [Solenopsis invicta]
          Length = 1422

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 127/435 (29%), Gaps = 74/435 (17%)

Query: 28   RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
            ++GMI  +   G Y   P        +   I +E    G  E   P   +   L  E   
Sbjct: 942  KSGMIEYYDVSGCYILRPWTFSIWKVIKEYIDDEIKSMGVEECYFPIFVTRSVLEKEKAH 1001

Query: 86   YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
             + +  E+  +    +  +       PT E +M   +   ++S   LP    Q     R 
Sbjct: 1002 VEDFAPEVAWVTKYGENDLAEPIAIRPTSETIMYPAYAKWLRSDTELPLRLNQWNNVVR- 1060

Query: 142  ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                        EF                                   K       +  
Sbjct: 1061 -----------WEF-----------------------------------KDPKPFLRTRE 1074

Query: 202  IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                  H         E +V    D       +               +     Y  T +
Sbjct: 1075 FLWQEGHTAFATKLEAEQEVLQILDMYARVYENLLAVPVVRGRKTEKEKFAGGDYTTTVE 1134

Query: 262  VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                              R I+     + G  +S   +   +G   +  +V   S+G+  
Sbjct: 1135 AFISTNG-----------RAIQGATSHHLGQNFSKMFNIQVEGKTNEKMFVYQNSWGL-T 1182

Query: 322  MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSK 374
             R +  +I    D +G++ P +VAP +I +I          +        C K+  RLSK
Sbjct: 1183 TRTIGVMIMIHGDDQGLVLPPNVAPIQIVVIPCGIAASMSESKKHELLTECSKLVERLSK 1242

Query: 375  VG-CDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             G   V  D       G +F   +L G P+++ +G + +  ++V +  R T  R   + +
Sbjct: 1243 EGKFRVKADFRENRTPGWRFNHWELKGVPIRIELGPRDLEKNQVTLVRRDTFQRIAGNKD 1302

Query: 433  EVINYASHRFSNNRP 447
             V+   +    N + 
Sbjct: 1303 NVVQLVASMLKNMQE 1317


>gi|157564|gb|AAA28594.1| transfer RNA-Glu-Pro aminoacyl synthetase [Drosophila melanogaster]
 gi|1871360|gb|AAC47469.1| glutamyl-prolyl-tRNA synthetase [Drosophila melanogaster]
          Length = 1714

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 71/423 (16%), Positives = 122/423 (28%), Gaps = 74/423 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y            +      E  R G  E   P   S   L  E      +  E+  
Sbjct: 1244 SGCYILRQWSFAIWKAIKTWFDAEITRMGVKECYFPIFVSKAVLEKEKTHIADFAPEVAW 1303

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    D  +       PT E VM   +   ++SYR+LP    Q     R           
Sbjct: 1304 VTKSGDSDLAEPIAVRPTSETVMYPAYAKWVQSYRDLPIRLNQWNNVVR----------- 1352

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
              EF                         +LR    L  +     A+      + + E +
Sbjct: 1353 -WEFKQPT--------------------PFLRTREFLWQEGHTAFADKE----EAAKEVL 1387

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             + D     +  +       +    T+ +               Y  T +          
Sbjct: 1388 DILD--LYALVYTHLLAIPVVKGRKTEKEKFA---------GGDYTTTVEAFISA----- 1431

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIE 330
                  S R I+     + G  +S      ++  +       +     G   R +  +I 
Sbjct: 1432 ------SGRAIQGATSHHLGQNFSKMFEIVYEDPEKTQQKKYVYQNSWGITTRTIGVMIM 1485

Query: 331  SSHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYARLSKVGCDVFWDD 383
               D +G++ P  VA  +  ++     +   D       DAC+ +  RL   G     D 
Sbjct: 1486 VHADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKALEKRLVGGGVRCEGDY 1545

Query: 384  MGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHR 441
                  G +F   +L G PL++ VG K +   + V ++ R TG +  + L +V       
Sbjct: 1546 RDNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVR-RDTGEKITIPLADVEKKIPAL 1604

Query: 442  FSN 444
               
Sbjct: 1605 LET 1607


>gi|302925353|ref|XP_003054078.1| hypothetical protein NECHADRAFT_89892 [Nectria haematococca mpVI
           77-13-4]
 gi|256735019|gb|EEU48365.1| hypothetical protein NECHADRAFT_89892 [Nectria haematococca mpVI
           77-13-4]
          Length = 548

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 81/208 (38%), Positives = 118/208 (56%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           +  H  ++R G + Q   GI+  LP+G +  D +  ++ +  +  GA  +S+ T+ S +L
Sbjct: 1   MVGHGKLIRGGFLRQAHSGIFQLLPMGLRVQDKIEKLLDKHMHSVGASRLSLSTISSEEL 60

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  S R D    E+ RLADR +  +I  PTHEE +T +    +KSY++LP   YQI  K+
Sbjct: 61  WRRSDRLDRVAPELFRLADRKEVPLILSPTHEEEITTLVAGTLKSYKDLPIRLYQITRKY 120

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE RPR G++RSREFLMKD Y+FDLT   +  +Y  +  +Y   F  L L  +   A S
Sbjct: 121 RDERRPRHGLLRSREFLMKDLYTFDLTTAAAIETYRLVSAAYRAFFSELKLPYLVAEASS 180

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDF 227
           G +GGDLSHE+ + +  GE  V      
Sbjct: 181 GDMGGDLSHEYHLPSAVGEDTVVNCNSC 208



 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 15/191 (7%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD--------------GKDHYVQ 313
                E      R +E GH F+ GT+YS+P+ A                    G    VQ
Sbjct: 356 CPRCEEGTLKIHRALECGHTFHLGTRYSVPLDACVFLPQSELPKVAKEEGLKPGSRVPVQ 415

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MG +G+G  R+  AV E   D +G+ WP ++APF++++I     D+   +  + + A  S
Sbjct: 416 MGCHGVGVSRIFGAVAEILADERGLNWPRAIAPFEVAVIPTPGLDKESIEIYDNLVAGSS 475

Query: 374 KV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G DV  DD  +  G +   AD++G+P+ VI+G  F      E++ R   ++E++ LE
Sbjct: 476 SQPGLDVVLDDRKQSFGWKMNDADIVGYPVVVILGKAFKQGRLCEVQCRQLSVKENVKLE 535

Query: 433 EVINYASHRFS 443
           E+  + S    
Sbjct: 536 ELPRFISGLLD 546


>gi|159904581|ref|YP_001548243.1| prolyl-tRNA synthetase [Methanococcus maripaludis C6]
 gi|259511605|sp|A9A787|SYP_METM6 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|159886074|gb|ABX01011.1| prolyl-tRNA synthetase [Methanococcus maripaludis C6]
          Length = 460

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 148/456 (32%), Gaps = 81/456 (17%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIR 58
           M  S+++  IL+               + G+  +    KG   +LP G K       I+R
Sbjct: 1   MEFSEWYSDILE---------------KAGIYDLRYPIKGCGVYLPYGFKIRRYSFEILR 45

Query: 59  EEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           +  + T   E   P L   +L   E      +  E+  +       +             
Sbjct: 46  KLLDETNHDETLFPMLIPENLLAKEGEHIKGFEDEVFWVTHGGKTPLEVKLALRP----- 100

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
                                             +  + M   +    T    K      
Sbjct: 101 -------------------------------TSETTMYYMMKQWIKVHTDLPMKLYQVVN 129

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y     R  ++          +    +H      +  + Q+          +     
Sbjct: 130 TFRYETKHTRPLIRLR------EIMSFKEAHTAHATKEDCDAQIT-------EALNLYGE 176

Query: 238 DFDDIISLNSI--VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
            FD+I     I    +W     A   +  + ++   P+ K      +++G +   G  ++
Sbjct: 177 FFDEICVPYIISKRPEWDKFPGADYTMAFDTIY---PDGK-----TMQIGTVHNLGQNFA 228

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI- 354
                 F+  DG+  +V    YGI + R +A++I    D KG++ P  VAP +I LI + 
Sbjct: 229 KTFELEFETPDGEKDFVYQTCYGI-SDRAIASLISVHGDEKGLVIPVDVAPIQIVLIPLL 287

Query: 355 -KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
            K  +++  D  +++   L      V  DD   + G ++   ++ G PL++ +G + + +
Sbjct: 288 FKGKEEIVMDKIKELNRTLKSE-FRVLLDDRDIRPGRKYNDWEIKGVPLRIELGPRDIEN 346

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  I  R TG +  +    ++       S  +  L
Sbjct: 347 GQALIVRRDTGEKITVEYSNILEEVEKIVSMYKENL 382


>gi|300708012|ref|XP_002996195.1| hypothetical protein NCER_100753 [Nosema ceranae BRL01]
 gi|239605474|gb|EEQ82524.1| hypothetical protein NCER_100753 [Nosema ceranae BRL01]
          Length = 499

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 143/422 (33%), Gaps = 75/422 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G Y   P G    + +      E  + G  E   P L     L  E      +  E+  +
Sbjct: 37  GCYILRPNGYFIWNEIRKWFTNEIEKLGVEECLFPMLIPKTFLEKEESHISDFSPEVAWI 96

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               ++ +       PT E VM   F   I S+R+LP    Q     R ELR    ++RS
Sbjct: 97  TKCGNEVLHEPVAIRPTSETVMYPSFARWISSHRDLPLKVNQWCNILRWELRGTTPLIRS 156

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           +E L ++ ++  +     K   +K  +  L +++R+                        
Sbjct: 157 KEILWQEGHTAHID----KEEADKEVLDILDLYYRMYK---------------------- 190

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSL 271
                                 E      I  L +  E++    Y+ T +    +     
Sbjct: 191 ----------------------ELLAVPVIKGLKTETEKFAGSDYSTTVEGFIPQ----- 223

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 + +GI+     + G  +S       +  DG   +V   S+G+   R +   +  
Sbjct: 224 ------AGKGIQAATSHHLGQNFSKMFDVKVQVDDGVSDFVYQNSWGM-TTRSLGIAVMI 276

Query: 332 SHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             D KG++ P  VA  ++ +I                     +I  +L      V  DD 
Sbjct: 277 HSDDKGLVLPPKVAKIQVVIIPCGLSVKTSTEDKNKLLKVINRIKNQLLLSKIRVHIDDR 336

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-VINYASHRF 442
               +G +F   ++ G P+++ +G K +  +++ I  R TG +   ++++ V        
Sbjct: 337 DNVTVGYKFNHWEIRGVPIRIEIGLKDLEKNEMCIYKRNTGTKNQYTIDDNVTEKIQLLI 396

Query: 443 SN 444
           ++
Sbjct: 397 ND 398


>gi|307717742|ref|YP_003873274.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
 gi|306531467|gb|ADN01001.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
          Length = 477

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 66/418 (15%), Positives = 131/418 (31%), Gaps = 65/418 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + + +      TG      P L     L  E+   + +  E+  +
Sbjct: 33  GCMVIRPRGYAIWEKIQSQLDRMFKETGHQNAYFPLLIPESFLHKEAEHVEGFSPELAVV 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                                    E L
Sbjct: 93  T----------------------------------------------------HGGGEAL 100

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +       +       Y K   SY  +   +   +  +R E        + EF+     
Sbjct: 101 EEPLVVRPTSETIIWSMYKKWIQSYRDLPLLINQWANVVRWEKRTRLFLRTTEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT--SDVHNEKLFDSLPEN 274
           G T     ++  +  +   +  + +       +      Y     S+     +     E 
Sbjct: 159 GHTAHATREEAEEEALRMLHV-YREFAEEYLALP---VFYGRKTESEKFAGAVTTYSIEA 214

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                + ++ G   + G  ++     TF+   G   YV   S+G+ + R++ AVI +  D
Sbjct: 215 MMQDKKALQAGTSHFLGQNFAKAFDVTFQTQAGTLDYVWATSWGV-STRLIGAVIMAHSD 273

Query: 335 GKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQ 391
            +G++ P  +AP +  +I I          D  ++++ RL++ G  V  D   +   G +
Sbjct: 274 DRGLVLPPRIAPTQAVIIPIYTKKTVDQVADYAKRVFGRLAEAGLSVEMDLDDQNSPGWK 333

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           FA  +L G P++V VG + +   K  +  R TG +  +S+  +           +  L
Sbjct: 334 FAEWELRGVPIRVEVGPRDMEQEKAVLVRRDTGEKRAVSVSRLPEEIPVLLEEIQKTL 391


>gi|290957102|ref|YP_003488284.1| class II tRNA synthetase [Streptomyces scabiei 87.22]
 gi|260646628|emb|CBG69725.1| putative class II tRNA synthetase [Streptomyces scabiei 87.22]
          Length = 471

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 58/408 (14%), Positives = 124/408 (30%), Gaps = 59/408 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +      TG      P L     L  E+   + +  E+  +     K
Sbjct: 41  PYGYGLWERMQQEMDARIKETGTQNAYFPLLIPQSYLAREAEHVEGFAPELAVVTHGGGK 100

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 101 DLEEPAVVRP-------------------------------------------------- 110

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +      S++K   SY  +   +   +  +R E  P     + EF+     G T   
Sbjct: 111 --TSEMIINASFSKWVQSYRDLPLLINQWANVVRWELRPRLFLRTSEFL--WQEGHTAHA 166

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              +  DF        ++D +     ++                   +L E      + +
Sbjct: 167 TYDEARDFAAHIHRQVYEDFMVNVLAMDVVPGRKTVKERFAGALNTLTL-EGMMGDGKAL 225

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++      G  ++   +  +   DG    V   S+G    R++ A++    D  G+  P 
Sbjct: 226 QMATSHELGQNFARAFNTRYLSKDGSQELVWQTSWGS-TTRMIGALVMMHGDDHGLRVPP 284

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFP 401
            +A  ++ ++ IK  D+       ++  RL   G  V  DD      G +    +L G P
Sbjct: 285 RLAQTQVVVLAIKD-DEAVLAKVRELGDRLKAAGVRVRVDDRTDVPFGRRAVDWELKGVP 343

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++V VG + + +    +  R++G +E ++ + ++         ++ +L
Sbjct: 344 VRVEVGPRDLENGTAMLVRRISGGKEPVAFDALVARLPALLEEDQALL 391


>gi|307128623|ref|YP_003880653.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri CARI]
 gi|306483085|gb|ADM89955.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri CARI]
          Length = 489

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 156/446 (34%), Gaps = 97/446 (21%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESG 84
            +R  MI +         P G    + + +I+      TG   +  P L     +  E  
Sbjct: 29  DVRGCMIIK---------PYGFSIWEKIKSILDNILKYTGHENVYFPLLIPKSYFSKEYN 79

Query: 85  RYDSYGKEMLRLAD-----------------RNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
               + KE   ++                  + +  +I  PT E ++ + ++  I SYR+
Sbjct: 80  HIKGFAKECAIISHYRLKNYKNKNIIVDKSSKLEDELIVRPTSETIIWNSYKRWINSYRD 139

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP  F Q     R E R RF  +R+ EFL ++ ++   T + + +   K+   Y  +   
Sbjct: 140 LPILFNQWANIIRWERRTRF-FLRTSEFLWQEGHTAHSTKKEAINQAKKILNIYTNVLEN 198

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
                                            +   K + +    +E T   + I    
Sbjct: 199 F---------------------------IAIPVIQGIKTYSEKFAGAEKTYCIESI---- 227

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                                           + +++    + G  +S      +    G
Sbjct: 228 ----------------------------MQDGKSLQIATSHFLGQNFSKAFDVRYSTEKG 259

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
              YV   S+GI + R++ A+I +  D  G+I P  +AP +I +I +    Q   +  EK
Sbjct: 260 NKEYVWATSWGI-STRLIGAIIMTHSDDNGLILPPKIAPIQIVIIPVY-KTQEQLNLIEK 317

Query: 368 ----IYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +   L K G ++ +D       G +F   ++ G PL++ +G K +    VE+  R 
Sbjct: 318 LVFPLKKFLEKRGINIKYDKRIYYTPGWKFNEYEIKGIPLRITIGKKDIDRGTVEVVRRD 377

Query: 423 TGIREDMSLEE---VINYASHRFSNN 445
           T  ++ +S+ +   +I     +  +N
Sbjct: 378 TLEKKYISINKLKFLIPKILSQIQDN 403


>gi|145529349|ref|XP_001450463.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418074|emb|CAK83066.1| unnamed protein product [Paramecium tetraurelia]
          Length = 930

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 99/308 (32%), Gaps = 28/308 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++ I +E   RD      K  L   + HQ S G   + P G    + +   +R +    G
Sbjct: 318 YVKIQKELALRDHRNVGKKQNLY--LFHQLSPGSAFFYPSGAHIYNTLMNFLRRQYYIRG 375

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +A LW  SG YD Y + +  +    +      P +      +F     SY
Sbjct: 376 YQEVISPNIFNAQLWKISGHYDKYKENLFFINMGEEGEYGLKPMNCPGHCLMFDMIQHSY 435

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F    +  R+E+     G+ R R F   DA+ F    +  +            I
Sbjct: 436 RDLPVRFADFGVLHRNEVHGALSGLTRVRRFQQDDAHIFCRMDQIQEE-IKSCLDFLSYI 494

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G                   EF +   T   +   +K+  D               
Sbjct: 495 YSLFG------------------FEFKLYLSTRPEKFLGTKEVWDNAEYQLEQGLKKFGK 536

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATF 302
              +     A Y    DV   KL+D+     +     ++      F    + S  +    
Sbjct: 537 PFEVNPGDGAFYGPKIDV---KLYDAYKREHQCGTIQLDFNLPERFNLQYRASEDVQEVQ 593

Query: 303 KGADGKDH 310
           +  +   +
Sbjct: 594 QDKEQLHN 601



 Score = 59.8 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 1/140 (0%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IE G            +    K   G  H     +  +   R +   +E           
Sbjct: 682 IESGSSQGLSQHELHKVLHEKKYELGYHHLKAGFARPVIVHRAILGSLERMIAVLTEQCG 741

Query: 342 -DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
                      + +       +D  EKI ARL   G  V  D+  + +  +   A +  F
Sbjct: 742 GKWPFWLSPKQLVLCPVSAYYKDVAEKIAARLRLEGYTVTTDEADQTLAKKVRNAQIQYF 801

Query: 401 PLQVIVGSKFVSDSKVEIKH 420
               ++G + V    ++++ 
Sbjct: 802 NFVGVIGEEEVKAGVIDVRD 821


>gi|91229885|ref|ZP_01262956.1| threonyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|91187354|gb|EAS73721.1| threonyl-tRNA synthetase [Vibrio alginolyticus 12G01]
          Length = 208

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 71/220 (32%), Gaps = 18/220 (8%)

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            D    +     + +     I E   A Y    +     L+D L    +     ++    
Sbjct: 1   WDQSEEALKQSLESMDIPYEIQEGEGAFYGPKIEF---TLYDCLDRAWQCGTVQLDFNLP 57

Query: 288 FYFGTKYSLPMSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
              G        AT+ G + +    V +    +G++     ++   + G    W      
Sbjct: 58  GRLG--------ATYVGENNERLVPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQA 109

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
             +++              ++I  +L K G     D   E+IG +     L   P  ++V
Sbjct: 110 VLMNIT------DKQSGYVQEIVQKLQKSGIRAKADLRNEKIGFKIREHTLKRVPYMLVV 163

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G + +   ++ ++ R         +++ I Y     S+ +
Sbjct: 164 GDQEMEAGEIAVRTRKGKDLGKFKVDDFIAYIQDEISSRK 203


>gi|311747849|ref|ZP_07721634.1| proline--tRNA ligase [Algoriphagus sp. PR1]
 gi|126575841|gb|EAZ80151.1| proline--tRNA ligase [Algoriphagus sp. PR1]
          Length = 493

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 140/426 (32%), Gaps = 64/426 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG      P       L  E+   + + KE   +
Sbjct: 33  GCMVIKPYGYSIWEKMQAELDRMFKETGHTNAYFPLFIPKSYLSKEASHVEGFAKECAVV 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                    +K+  N          K  +EL  R          
Sbjct: 93  TH---------------------YRLKNGENGEGVIVDPDAKLEEELIVRP--------- 122

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----- 211
                    +      +Y     SY  +   +   +  +R E        + EF+     
Sbjct: 123 --------TSETVIWSTYKNWIQSYRDLPLLVNQWANVVRWEMRTRLFLRTAEFLWQEGH 174

Query: 212 -VLADTGETQVFCSKDFMDFPIPSENTD-FDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              A   E +    +    +   +E+      +    S  E++                 
Sbjct: 175 TAHATAKEAEAETLQMMNVYATFAEDFMALPVVRGRKSANERFAG-----------ADDT 223

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E      + ++ G   + G  ++      F   DGK  YV   S+G+ + R++ A+I
Sbjct: 224 LCIEAMMQDGKALQAGTSHFLGQNFAKAFDVKFAAKDGKLDYVWGTSWGV-STRLMGALI 282

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVGCDVFWDDMG- 385
            +  D  G++ P  +AP ++ ++ I   ++      +   +I A L KVG  V +D+   
Sbjct: 283 MAHSDDNGLVLPPKLAPIQVVIVPIYRKEEEFDAISEKANEIMAELRKVGISVKYDNRDT 342

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGIREDMSLEEVINYASHRFS 443
            + G +FA  +L G PL++ +G + + +  +EI  R   T  + ++S + +    S    
Sbjct: 343 HKPGWKFAEYELKGVPLRIAIGPRDLENGTIEIARRDNLTKSQFELSSQPIAEKISGMLE 402

Query: 444 NNRPVL 449
             +  +
Sbjct: 403 EIQEAI 408


>gi|332158991|ref|YP_004424270.1| threonyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331034454|gb|AEC52266.1| threonyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 625

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 70/429 (16%), Positives = 142/429 (33%), Gaps = 46/429 (10%)

Query: 24  KLMLRTGMIHQH---SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-- 78
           KLML   ++        G   + P G+     +   + E+    GA+E+  P +   +  
Sbjct: 209 KLMLEHELVDYEPGSDPGNLRYYPKGRLIKSLLEQYVTEKVIEYGAMEVETPVMYDFEHP 268

Query: 79  -LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            L     R+ +       +    DK              I +  + SY++LP   Y++  
Sbjct: 269 ALEKYLNRFPARQ----YIVLSGDKRYFLRFAACFGQFLISKDAVISYKHLPLRMYELTR 324

Query: 138 KF--RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               R++     G+ R R F M D ++     E +K  + K F   + +   +GL     
Sbjct: 325 YSFRREKRGELSGLRRLRAFTMPDMHTLAKDLEQAKEEFKKQFKLSMEVLEGVGLTP--- 381

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                              D  E  +  ++DF          +   +I    ++E W   
Sbjct: 382 -------------------DDYEVAIRFTEDFWKEN-RDFIIELVKLIGKPVLIEMWKQR 421

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           +            D+L +   +S   I+V        + +      +   +G++ Y  + 
Sbjct: 422 FFYFILKFEFNFVDNLDKAAALSTVQIDV--------ENAERFGIKYYDENGEERYPLIL 473

Query: 316 SYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARL 372
                    RV+ A++E             +  +   +   +        D    +  +L
Sbjct: 474 HCSPSGAIERVMYAILEKQAKLMQQGKKPMLPVWLSPIQVRVIPVSNDFLDYALYVAGKL 533

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                 V  DD  E++  +   A+    P  V+VG+K      + ++ R  G + +  +E
Sbjct: 534 EGAKIRVDVDDEDERLNKKIRRAEKEWIPYIVVVGAKEKETGTIMVRRREDGKQYETRIE 593

Query: 433 EVINYASHR 441
           E+I     +
Sbjct: 594 ELIREIKEK 602


>gi|148643274|ref|YP_001273787.1| threonyl-tRNA synthetase [Methanobrevibacter smithii ATCC 35061]
 gi|166225460|sp|A5UMJ1|SYT_METS3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148552291|gb|ABQ87419.1| threonyl-tRNA synthetase, ThrS [Methanobrevibacter smithii ATCC
           35061]
          Length = 608

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 63/404 (15%), Positives = 125/404 (30%), Gaps = 40/404 (9%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           W P G+   D +   +       GA+ +  P     D    +     +G+   R   + +
Sbjct: 219 WFPKGRLVRDLLADYVYNLVVDQGAMPIETPIFYDLDNEAINVHAAKFGERQYRTDTKKN 278

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSREFLMKD 159
             ++           +      +++NLP   Y++    FR E +    G+ R R F M D
Sbjct: 279 --LMLRFACCFGAFRVMADPFITWKNLPAKLYELSTYSFRFEKKGEVVGLKRLRAFTMPD 336

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +SF      +   ++K     ++    L +    +   +                  E 
Sbjct: 337 FHSFCADMNSTLEEFSKQTDMCIQTGVDLDVNYEIIFRATKDFYD-------------EN 383

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           + +          P       +     S    + A              D L        
Sbjct: 384 KDWMYSIGKKIGKPVLLEILPERKHYWSCKIDFAA-------------IDYLGRPIENPT 430

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGI 338
             I+V        +       T+ G DGK+HY  +      G++  V   +      +  
Sbjct: 431 VQIDV--------ESGKRFDITYLGEDGKEHYPTILHCSPTGSIERVICSLLEKTAIELD 482

Query: 339 IWPDSVAPF-KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                +  +     + I    +  +D   ++Y +++     V  DD  E +G +   A  
Sbjct: 483 EKAPMLPTWLSPIEVRIITVGEDHKDFANELYDKINAENIRVDVDDRDESVGKKIRNAAT 542

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              P   +VG          +  R TG + DM+++E+I     +
Sbjct: 543 EWIPYIFVVGDNEKESGVFSVTVRETGEKVDMTVDELIKEILDK 586


>gi|146084142|ref|XP_001464936.1| bifunctional aminoacyl-trna synthetase [Leishmania infantum JPCM5]
 gi|134069031|emb|CAM67175.1| putative bifunctional aminoacyl-tRNA synthetase [Leishmania
           infantum JPCM5]
          Length = 810

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 64/417 (15%), Positives = 125/417 (29%), Gaps = 73/417 (17%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           +  MI  +   G Y   P        V   +  +  + G  +   P   S + L  E   
Sbjct: 321 KAEMIEYYDVSGCYIIRPWAYYVWKCVQRFLGGKIEKLGVEDCYFPMFVSRNCLEREKDH 380

Query: 86  YDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +    D  +       PT E VM   +   I+S+R+LP          R 
Sbjct: 381 IEGFAPEVAWVTRAGDTELEQPVAVRPTSETVMYPYYAKWIRSHRDLPVRLNMWNNVIRW 440

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E       +R+REFL ++ +                                        
Sbjct: 441 EFSHPTPFIRTREFLWQEGHCA-------------------------------------- 462

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                       A+    +V    +                       +     Y  T +
Sbjct: 463 ---------WAKAEECAKEVLDILECYASVYEQLLAVPVVRGRKTEKEKFAGGDYTTTVE 513

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG- 320
              E +            RG +       G  +       F+  +  +  +       G 
Sbjct: 514 TFIEAVG-----------RGCQGATSHNLGQNFGKMFDIRFQDPENNEQTLIPWQNSWGL 562

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLS 373
           + RV+  +I    D +G++ P  VA  ++ +I +        +A       C ++ + L 
Sbjct: 563 STRVIGVMIMVHGDNRGMVMPPRVASTQVIIIPVGITKDTTEEARQELLASCRRLESELC 622

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           + G     D       G +F   ++ G PL+V +G + +++  + +  R +G R  +
Sbjct: 623 EGGVRAKCDLRDNYSPGWRFNHWEVKGVPLRVELGPRELAERSLAVAVRHSGARHSV 679


>gi|134045917|ref|YP_001097403.1| prolyl-tRNA synthetase [Methanococcus maripaludis C5]
 gi|172044143|sp|A4FYA4|SYP_METM5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|132663542|gb|ABO35188.1| prolyl-tRNA synthetase [Methanococcus maripaludis C5]
          Length = 460

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 148/456 (32%), Gaps = 81/456 (17%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIR 58
           M  S+++  IL+               + G+  +    KG   +LP G K       I+R
Sbjct: 1   MEFSEWYSDILE---------------KAGIYDLRYPIKGCGVYLPYGFKIRRYSFEILR 45

Query: 59  EEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           +  + T   E   P L   +L   E      +  E+  +       +             
Sbjct: 46  KLLDETNHDETLFPMLIPENLLAKEGEHIKGFEDEVFWVTHGGKTPLEVKLALRP----- 100

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
                                             +  + M   +    T    K      
Sbjct: 101 -------------------------------TSETTMYYMMKQWIKVHTDLPMKLYQVVN 129

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              Y     R  ++          +    +H      +  + Q+          +     
Sbjct: 130 TFRYETKHTRPLIRLR------EIMSFKEAHTAHATKEDCDAQIT-------EALNLYGE 176

Query: 238 DFDDIISLNSI--VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
            FD+I     I    +W     A   +  + ++   P+ K      +++G +   G  ++
Sbjct: 177 FFDEICVPYIISKRPEWDKFPGADYTMAFDTIY---PDGK-----TMQIGTVHNLGQNFA 228

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI- 354
                 F+  DG+  +V    YGI + R +A++I    D KG++ P  VAP +I LI + 
Sbjct: 229 KTFELEFETPDGEKDFVYQTCYGI-SDRAIASLISVHGDEKGLVIPVDVAPIQIVLIPLL 287

Query: 355 -KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
            K  +++  D  +++   L      V  DD   + G ++   ++ G PL++ +G + + +
Sbjct: 288 FKGKEEIVMDKIKELNNTLKSE-FRVHLDDRDIRPGRKYNDWEIKGVPLRIELGPRDIEN 346

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +  I  R TG +  +    ++       S  +  L
Sbjct: 347 GQALIVRRDTGEKITVEYSNILEEVEKIVSMYKENL 382


>gi|329765249|ref|ZP_08256829.1| threonyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329138155|gb|EGG42411.1| threonyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 624

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 75/424 (17%), Positives = 141/424 (33%), Gaps = 54/424 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR-----YDSYGK 91
            G   + P G+     +   + +     G  E+  P +        S       Y +   
Sbjct: 224 SGNMRFFPNGRLIKSLIERYVTDRVKEYGGYEVETPIMYD------SHHPSMVSYFNRFP 277

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ-IQLKFRDELRPR-FGV 149
                 D   K +            +   +  SY+NLP+  Y+  +  FR E      G+
Sbjct: 278 ARQYNIDSEGKKLFLRFAACFGQFLMANEYQLSYKNLPYKLYELTRYSFRREQSGELVGL 337

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R F M D ++F    E S       F     +   LG                    
Sbjct: 338 RRLRAFTMPDCHAFCKDIEQSIKEIKVRFDLSRNVLKELG-------------------- 377

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            IV +D      F    + +     E            +VE W   +            D
Sbjct: 378 -IVDSDYEMAIRFTEDFYNENKSSIEE--LVKKHGRPVLVEMWKEKFFYFVLKWEFNFVD 434

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAV 328
           S+ +   +S   I+V +   +G          F      + H + + +   GA+  +  V
Sbjct: 435 SMGKASALSTDQIDVENGNRYG--------IEFVDEHNVRKHPIILHNSPSGAIERIVYV 486

Query: 329 I-----ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           +     +   +G+   +P  +AP ++ +I +K   +     C+ +  +LS     V  DD
Sbjct: 487 LLEKAAQDIKEGRKPQFPLWLAPTQVRVIPLK---EEFSSICDTLVDKLSSFNIRVDIDD 543

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E IG +   A+       +++G K  +   + I+ R TG   +++ +  IN  + + +
Sbjct: 544 RNESIGKRIRDAEKDWIRYTLVIGEKEANSENLSIRDRQTGNVRELTFDNFINEINEQ-T 602

Query: 444 NNRP 447
             +P
Sbjct: 603 KEKP 606


>gi|253567818|ref|ZP_04845229.1| threonyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|251841891|gb|EES69971.1| threonyl-tRNA synthetase [Bacteroides sp. 1_1_6]
          Length = 556

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 113/341 (33%), Gaps = 32/341 (9%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 230 EYLVLLEEAKKRDHRKIGKEMQLFM-FSETVGKGLPMWLPKGTALRLRLQEFLRRIQTRY 288

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L+V SG Y  YGK+  +        +     P +     +I+++  
Sbjct: 289 DYQEVITPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCEIYKNFP 348

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +SY++LP    +     R E      G+ R R F   DA+ F    +     + ++    
Sbjct: 349 RSYKDLPLRIAEFGTVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDII 407

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +F  +  ++   +                  D    + +   D           +  +
Sbjct: 408 SIVFRSMNFQNFEAQISLR--------------DKVNREKYIGSDDNWEKAEQAIIEACE 453

Query: 242 IISLNSIVE-QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
              L + +E    A Y    D     + D++    ++    ++                 
Sbjct: 454 EKGLPAKIEYGEAAFYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFEL 502

Query: 301 TFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            + G+D + H    +     G+M    AV+     GK  +W
Sbjct: 503 EYMGSDNQKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLW 543


>gi|325120098|emb|CBZ55652.1| putative prolyl-tRNA synthetase [Neospora caninum Liverpool]
          Length = 656

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 123/374 (32%), Gaps = 67/374 (17%)

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            L  E    + +  E+  +    D  +       PT E +M   +   I+S+R+LP    
Sbjct: 230 KLEKEKDHVEGFSPEVAWVTHYGDSPLAEKIAIRPTSETIMYPAYSKWIRSHRDLPLKLN 289

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           Q     R E +     +R+REFL ++ ++   T E                      ++ 
Sbjct: 290 QWCSVVRWEFKQPTPFLRTREFLWQEGHTAHATEE----------------------EAW 327

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +  +   +      E +                              I    S  E++ 
Sbjct: 328 QLVLDILELYRRWYEECLA--------------------------VPVIKGEKSENEKFA 361

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                T+                 + RGI+       GT ++      F+  +G    V 
Sbjct: 362 GGKKTTTVEAYIAE----------NGRGIQAATSHLLGTNFAKMFEIEFEDEEGHKRLVH 411

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYA 370
             S+G    R +  +I +  D KGI+ P  VA  ++ +I I   D+        C ++ A
Sbjct: 412 QTSWGC-TTRSLGVMIMTHGDDKGIVLPPRVASVQVIIIPILFKDENTAEIVAKCRELKA 470

Query: 371 RLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            L K    V  DD      G ++   ++ G PL++ +G K ++     +  R T     +
Sbjct: 471 LLEKADIRVRIDDRPNYTPGWKYNHWEVKGVPLRLELGPKDLAKGSARVVRRDTNEAYQV 530

Query: 430 SLEEVINYASHRFS 443
             +E++        
Sbjct: 531 QWDELVPKLQELMD 544


>gi|319902090|ref|YP_004161818.1| prolyl-tRNA synthetase [Bacteroides helcogenes P 36-108]
 gi|319417121|gb|ADV44232.1| prolyl-tRNA synthetase [Bacteroides helcogenes P 36-108]
          Length = 497

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 67/427 (15%), Positives = 150/427 (35%), Gaps = 49/427 (11%)

Query: 24  KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
           +L+++  +  Q +  G     P G    + +   + +    TG +    P L     L  
Sbjct: 21  ELVVKADLAEQSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLLIPKSFLSR 80

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           E+   + + KE   +                                         + ++
Sbjct: 81  EAEHVEGFAKECAVVTHY--------------------------------------RLKN 102

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           +      V+     L ++      +     ++Y     SY  +       +   R E   
Sbjct: 103 DPNGGGVVVDPAAKLEEELIIRPTSETIIWNTYKNWINSYRDLPILCNQWANVFRWEMRT 162

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                + EF+     G T     ++  +  +   N  + +       V       +A   
Sbjct: 163 RLFLRTAEFL--WQEGHTAHATREEAEEEAVRMLNV-YGEFAEKYMAVPVVKGVKSANER 219

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                L     E      + ++ G   + G  ++      F   + K  YV   S+G+ +
Sbjct: 220 FAG-ALNTYTIEAMMQDGKALQSGTSHFLGQNFAKAFDVQFVNKENKMEYVWATSWGV-S 277

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCD 378
            R++ A+I +  D  G++ P  +AP ++ ++ I  + ++     EK+    A+L  +G  
Sbjct: 278 TRLMGALIMTHSDDNGLVLPPHLAPIQVVIVPIYKNAEMLSKIDEKVAGIVAKLKSMGIS 337

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V +D+   ++ G +FA  ++ G P+++++G + + +S +E+  R T  +E  S E +  Y
Sbjct: 338 VKYDNADNKRPGFKFADYEVKGVPVRLVMGGRDLENSTMEVMRRDTLEKETRSCEGIEEY 397

Query: 438 ASHRFSN 444
                 +
Sbjct: 398 IKDLLED 404


>gi|303243566|ref|ZP_07329908.1| threonyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
 gi|302486127|gb|EFL49049.1| threonyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
          Length = 631

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 55/414 (13%), Positives = 126/414 (30%), Gaps = 40/414 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + W P G+   D +   +         + +  P +            D +G+   R 
Sbjct: 227 AGHFRWYPKGKLIRDLLEDYVYNMVVENNGMPVETPVMYDLGNKAIREHADKFGERQYRF 286

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSRE 154
               +K ++           + +      ++LP   Y++    FR E R    G+ R R 
Sbjct: 287 KQ-GNKELMLRFAACFGQFMMKKDMYILPKHLPLKLYELSTYSFRYEQRGELVGLKRLRA 345

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++     + +   +   F   L+    L      +   +     D + E+    
Sbjct: 346 FTMPDMHTVCYDIKQAMEEFENQFWMCLKTGDDLNTPYSIIFRYTKDFF-DENKEWFFKI 404

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                + +     ++                   + +    +    D+    + DS    
Sbjct: 405 AKEYKEKYGKDVILEL------------------LPKRKHYWVGKVDM---AVIDSFGRP 443

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS-- 332
                  I+V        + +   +      + K + + +     G++  V   +     
Sbjct: 444 IENPTVQIDV--------ESAKRFNIVVHDGNEKIYPIILHCSPTGSVERVLCGLLEKAS 495

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D +    P          + +        D    I  +L +    V +DD  E +G + 
Sbjct: 496 MDAEAGAPPMLPVWLSPIQVRVIPVSDAHNDYALNIAKKLRENNIRVDYDDREESVGKKI 555

Query: 393 AVADLLGFPLQVIVGSKFVSDS--KVEIKH---RLTGIREDMSLEEVINYASHR 441
             A     P  V++G + V ++   + ++        ++E M+++E+I      
Sbjct: 556 RNAGKDWIPYVVVIGDEEVKNNILTITVREKSALKKPVKEKMTVDELIERIKEE 609


>gi|119482073|ref|XP_001261065.1| prolyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
 gi|119409219|gb|EAW19168.1| prolyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
          Length = 652

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 72/430 (16%), Positives = 131/430 (30%), Gaps = 81/430 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
            G +   P      + +      E  + G    S P   S D+   E    + +  E+  
Sbjct: 117 SGCFILKPASYFIWEEIQNWFNAEIKKVGVKNCSFPLFVSEDVLQREKDHIEGFAAEVAW 176

Query: 96  LADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +  +       PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 177 VTHAGNTPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLR 236

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT E ++     M   Y RI+                          
Sbjct: 237 TREFLWQEGHTAHLTEEAAREEVLHMLGLYARIYE------------------------- 271

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      +    +  E++    Y  T + +       
Sbjct: 272 -----------------------ELLAVPVVKGQKTEKEKFAGGLYTTTVEGYIPA---- 304

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA-----MRVV 325
                  + RGI+ G     G  +S     T +    K    +   Y          R +
Sbjct: 305 -------TGRGIQGGTSHGLGQNFSKMFGITVEDPSAKPDEKKPPLYVWQNSWGLSTRTL 357

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------LSKVGCD 378
             ++    D +G++ P  VA  +  ++ +    +   +  EK+YA        L   G  
Sbjct: 358 GVMVMIHSDNRGLVLPPRVAETQTIIVPVGITAKTSDEEREKLYAEIDSLVSLLKVAGIR 417

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMSLEEV 434
              D   G   G +F   +L G PL++  G    +   V    R       +  + ++E+
Sbjct: 418 ADSDKREGYSPGWKFNDWELRGVPLRIEFGPGESAGRYVTAARRDIPGKDGKSTIPIDEL 477

Query: 435 INYASHRFSN 444
                     
Sbjct: 478 STAVPALLET 487


>gi|213582472|ref|ZP_03364298.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 238

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 75/241 (31%), Gaps = 18/241 (7%)

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              + +V   T   +   S +  D          ++            A Y    +    
Sbjct: 8   GFEKIVVKLSTRPDKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEF--- 64

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRV 324
            L+D L    +     ++    F   ++ S    A++ G D +    V +    +G+M  
Sbjct: 65  TLYDCLDRAWQCGTVQLD----FSLPSRLS----ASYVGEDNERKVPVMIHRAILGSMER 116

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++     G    W   V    +++           +   ++  +L   G  V  D  
Sbjct: 117 FIGILTEEFAGFFPTWLAPVQVVVMNIT------DSQSEYVNELTQKLQNAGIRVKADLR 170

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            E+IG +     L   P  ++ G K V   KV ++ R       + + +VI        +
Sbjct: 171 NEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVNDVIEKLQQEIRS 230

Query: 445 N 445
            
Sbjct: 231 R 231


>gi|317030877|ref|XP_001392403.2| prolyl-tRNA synthetase [Aspergillus niger CBS 513.88]
          Length = 576

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 85/278 (30%), Positives = 133/278 (47%), Gaps = 34/278 (12%)

Query: 2   RRSKYFLPI----------LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALD 51
           R S +++P            +E+  D       L++R G + Q   GI+  LPLG +  D
Sbjct: 9   RVSNFWIPTGGITKKPVQGEKEDAND-------LLIRGGFLRQAYSGIFHMLPLGLRVQD 61

Query: 52  NVNAIIREEQN------------RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  +I +                 GA ++S+ +L + +LW +SGR    G E+ R  DR
Sbjct: 62  KLERLIDKHMRTVVIEFFLIGWISAGASKVSLSSLSAQELWEQSGRLKE-GSEIFRFQDR 120

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
            +   +  PTHEE +T +     KSYR+LP   YQI  K+RDE RPR G++R REF+MKD
Sbjct: 121 KESRFLLAPTHEEEITTLVGHLTKSYRDLPVRVYQISRKYRDEQRPRQGLLRGREFIMKD 180

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            Y+FD   E +  +Y  +  +Y  +F  L +  +   A+SG +GG LSHEF   ++ GE 
Sbjct: 181 LYTFDYNAENALKTYTAVKKAYTELFDELKIPYLVAAADSGNMGGSLSHEFHFASNKGED 240

Query: 220 QVF----CSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            V     C   + +     +  + DD  +       + 
Sbjct: 241 TVXSCSSCDSVYNEELADGKAHNVDDQQTRIGHASGFD 278



 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 76/137 (55%), Gaps = 7/137 (5%)

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            +QMG +GIG  R+++AV ++  D KG+ WP ++AP+++ ++  K  ++       +IY 
Sbjct: 443 PMQMGCHGIGVSRMISAVADNLADSKGLNWPRAIAPYEVIVVPAKGMEEE----AVQIYD 498

Query: 371 RLSKVG---CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            L+       DV  DD  +Q+G +   ADL+G+P+ V+VG  +     +E++ R   +RE
Sbjct: 499 ALTSEPTTALDVILDDRDKQMGWKLGDADLIGYPVIVVVGKGWKKQRTLEVQCRRLEVRE 558

Query: 428 DMSLEEVINYASHRFSN 444
           D++LE +  +       
Sbjct: 559 DVALEALPEFVGSLLEK 575


>gi|242018749|ref|XP_002429836.1| prolyl-tRNA synthetase, putative [Pediculus humanus corporis]
 gi|212514854|gb|EEB17098.1| prolyl-tRNA synthetase, putative [Pediculus humanus corporis]
          Length = 379

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 106/391 (27%), Positives = 180/391 (46%), Gaps = 34/391 (8%)

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            N   A+EM +P L    ++  SG   ++  ++ +     +++ I  PT EE+++++  S
Sbjct: 1   MNEISALEMLLPLLTDKKIFSASG--KAHLPDLFKFNQNVNESYILNPTCEEIVSELLAS 58

Query: 121 HIK-SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           + + SY+NLP  FYQI  KFRDE RP++G++RS+EF+MKD Y FD T E S  +Y ++  
Sbjct: 59  YTQMSYKNLPCRFYQISSKFRDEKRPKYGLLRSKEFIMKDLYCFDSTFESSMMTYEEVKN 118

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            Y   F+ LG+  + ++   G IGG  S EF  +AD G+  +   +              
Sbjct: 119 KYKEFFNNLGIPYVVVKGTEGDIGGLKSDEFYFMADVGDNNLVLCQKC------GHKECI 172

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           + +                     N+++  +         +GIEVGH F  GTKYS   +
Sbjct: 173 EFVKL-------------------NDQVCSNCQNGDVKIFKGIEVGHTFQIGTKYSKIFN 213

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             +   D +   V+M  +G+G  R++AA +E       I WP S+ P+++ LI  K +  
Sbjct: 214 TNYLSKDNEKIPVEMCCFGLGLTRILAASVEVLSSFNEIRWPHSIVPYQVCLIPPKKNSI 273

Query: 360 VCR---DACEKIYARL-SKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSD- 413
             R   D    ++  L    G D+  DD     IG +      LG P  +I+G   + + 
Sbjct: 274 EERQGGDIVNILFNELYRTFGNDLVVDDRTSMTIGKRIQSIKELGLPFAIIIGKDIIKNP 333

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             VE+          + + ++  +   R  +
Sbjct: 334 PLVEVYDVYKNHSTFLQINDLCRFIQDRIKD 364


>gi|255527265|ref|ZP_05394146.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255509050|gb|EET85409.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 556

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 122/241 (50%), Gaps = 5/241 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  L  L+E P + E+ S+KLM+R G+I + + GIY+++P G+K + NVN +I+ E
Sbjct: 1   MKLSKMILGTLREAPGETELESYKLMVRAGIIRKVASGIYNFMPTGKKVIGNVNNLIKNE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ V      +L  +    +S   +     D+++K    G   +E   +I ++
Sbjct: 61  MEKIDSQEIEVSQFVPFELLNQCNNKESSLTDTFETVDKSEKKFYVGADFKEPYIEIVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP + Y IQ + +DE +P+FG+++S+EF     Y F      S    N +   
Sbjct: 121 EIKSYKQLPVSIYSIQKQIKDEPKPKFGIIKSKEFNELQCYVFHDDLTESSQYINSLCEV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +  I+H+  + SI   +    I   L  E +V  ++        K+ ++    +  T+ +
Sbjct: 181 FNSIYHKCRIDSIKTNSLRFFIKHPLGEEHVVCCESC-----GYKEDLEIATCTLQTEEE 235

Query: 241 D 241
           D
Sbjct: 236 D 236



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 90/214 (42%), Gaps = 6/214 (2%)

Query: 217 GETQVFCSKDFMDFPIPSENTDF---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           G   + C    +D  I          +D       V           D       D  P 
Sbjct: 324 GPINLKCDTLLVDEEITRMRNFMVGANDTGYHYECVNYERDFTGTVGDFKKITEKDKCPV 383

Query: 274 NKRVSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                     +G   I    T YS  M+A F    GK   + + +  I   R++A ++E 
Sbjct: 384 CGNSINIENAMGLGQIMNLKTTYSENMNAVFLDKLGKSKPMSIINASINIDRLLALIVEQ 443

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           +HD  GI+WP SVAP+++ +I     ++      E IY +L  +G DV  DD  E+ G +
Sbjct: 444 NHDKNGIVWPKSVAPYEVIVIAAVFKNEEQMKTAENIYNKLKSLGIDVLLDDRDERAGVK 503

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           F  ADL+G P+++ VG + +SD KVE K R    
Sbjct: 504 FKDADLIGAPIRITVGKR-ISDGKVEFKLRNNDN 536


>gi|315230254|ref|YP_004070690.1| threonyl-tRNA synthetase [Thermococcus barophilus MP]
 gi|315183282|gb|ADT83467.1| threonyl-tRNA synthetase [Thermococcus barophilus MP]
          Length = 625

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 69/413 (16%), Positives = 138/413 (33%), Gaps = 43/413 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD---LWVESGRYDSYGKEM 93
            G   + P G+     +   + E+    GA+E+  P +   +   L     R+ +     
Sbjct: 225 PGNLRYYPKGRLIKSLLEQYVTEKVIEYGAMEVETPIMYDFEHPALEKYLNRFPARQ--- 281

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ-IQLKFRDELRPR-FGVMR 151
             +    DK              I +    SY++LP   Y+  +  FR E R    G+ R
Sbjct: 282 -YIVKSGDKKYFLRFAACFGQFLIKKDATISYKHLPLRMYELTRYSFRREKRGELSGLRR 340

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R F M D ++     + +   + K +   + +   +GL                     
Sbjct: 341 LRAFTMPDMHTVAKDLKQAMEEFKKQYKLSMEVLKGVGLTP------------------- 381

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              D  E  +  ++DF +        +   II    ++E W   +            D+L
Sbjct: 382 ---DDYEVAIRFTEDFWNEN-KDFVVELVKIIGKPVLIEMWKQRFFYFILKFEFNFVDNL 437

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG--AMRVVAAVI 329
            +   +S   I+V        + +     T+   DGK+ +  +          RV+ A++
Sbjct: 438 DKAAALSTVQIDV--------ENAERFGITYYDEDGKEKHPLILHCSPSGAIERVMYAIL 489

Query: 330 ESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           E     +          +   +   +   ++   D    I  +L      V  DD  +++
Sbjct: 490 EKQAKLRNQGKKPMYPLWLSPIQVRVIPVNEDYLDYALYIAGKLEGARIRVDVDDTSDRL 549

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             +   A+    P  ++VG        + ++ R  G + +M LE++I     R
Sbjct: 550 TKKIRKAEKEWIPYIIVVGENEKRQGIITVRKREDGKQYEMQLEDLIKEIKQR 602


>gi|171688027|ref|XP_001908954.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943975|emb|CAP69627.1| unnamed protein product [Podospora anserina S mat+]
          Length = 577

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 2/234 (0%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R S+ + P  ++ P       H  ++R G +     GI+  LPLG++    +  ++    
Sbjct: 8   RLSRVWFPT-KKRPASGVENGHAKLIRAGFLRPSHAGIFHMLPLGRRVQTKLEELVARHM 66

Query: 62  NRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                A  +S+  + S  LW +SGR ++   E+ + +DR +   +  PTHEE +T +   
Sbjct: 67  EHMLAASRVSLSAVSSQSLWDKSGRLENTASELFKFSDRKNVGYLLAPTHEEEITALVAQ 126

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             K+ ++LP   +QI  K+RDE RPR G++R REF+MKD Y+FD + E +  +Y+ + + 
Sbjct: 127 TAKTAKDLPLRLFQITPKYRDEFRPRHGLLRGREFVMKDLYTFDSSKESALETYDNVRLV 186

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
           Y +IF  + L  +  +A SG +GG+LSHE+ +    GE  V             
Sbjct: 187 YSQIFEEMKLPVLAAKASSGNMGGNLSHEYHLPTPLGEDHVISCDSCNYVANEE 240



 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 94/182 (51%), Gaps = 11/182 (6%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT--FKGADGKDHYVQMGSYGIGAMRVV 325
             S       + + +E+GH FY GT+YS  + AT      + K   +QMG YGIG  R++
Sbjct: 395 CPSCASGHLKAEKAMELGHTFYLGTRYSEALGATILVPNDERKAVPMQMGCYGIGISRIL 454

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG------CDV 379
            AV E   D KG+ WP ++AP+   ++     D+       ++Y +++++G       DV
Sbjct: 455 GAVAELLMDEKGLNWPVAIAPYSCVIVMGAGVDEQD---AVEVYRQINQIGRVQAKYLDV 511

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  + +  +   ADL GFP+ V +G ++++  ++E++ R  G+++ + + E+    +
Sbjct: 512 VLDDRQKTLPWKLMDADLAGFPIIVTLGREWLAAKRLEVQCRRLGVKQAVGITELPQIIA 571

Query: 440 HR 441
             
Sbjct: 572 KL 573


>gi|161528434|ref|YP_001582260.1| threonyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
 gi|238686913|sp|A9A2B1|SYT_NITMS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160339735|gb|ABX12822.1| threonyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
          Length = 621

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 125/415 (30%), Gaps = 47/415 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR-----YDSYGK 91
            G   + P G+     +   + +     G  E+  P +  ++            Y +   
Sbjct: 221 SGNMRFFPNGRLMKSLIERYVTDRVKEYGGYEVETPIMYDSE------HPSMVSYFNRFP 274

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ-IQLKFRDELRPR-FGV 149
                 D   K +            +      SY+NLP+  Y+  +  FR E      G+
Sbjct: 275 ARQYNIDSEGKKLFLRFAACFGQFLMANQFQMSYKNLPYKLYELTRYSFRREQSGELVGL 334

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R F M D ++F      +       F     +   LG                    
Sbjct: 335 RRLRAFTMPDCHAFCKDIPQAVDEIKVRFDLSQSVLKELG-------------------- 374

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            I  +D      F    + +     E            +VE W   +            D
Sbjct: 375 -IDESDYDMAIRFTEDFYNENKSAIEE--LVKKHGRPVLVEMWKEKFFYFVLKWEFNFID 431

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ--MGSYGIGAMRVVAA 327
           +L +   +S   I+V +   +G          F   +    +      S      R++ A
Sbjct: 432 NLGKASALSTDQIDVENGDRYG--------IEFVDENNTAQHPIILHNSPSGAIERIIYA 483

Query: 328 VIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           ++E + D         +  +       I    +   D C  +  ++S     V  DD  E
Sbjct: 484 LLEKAADDSKKGKKPQLPLWLAPTQVRIIPLKEEFYDFCNNLCDKISAQNVRVDVDDRNE 543

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            IG +   A+       +++G K      + I+ R TG   ++S ++ +N  + +
Sbjct: 544 SIGKRIREAEKEWIQYILVIGEKEAGSENLSIRDRQTGNVREVSFDDFMNEINEQ 598


>gi|328780811|ref|XP_003249866.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase [Apis mellifera]
          Length = 1501

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 134/434 (30%), Gaps = 76/434 (17%)

Query: 28   RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
            ++GMI  +   G Y   P        +   I +E  + G  E   P   +   L  E   
Sbjct: 1020 KSGMIEYYDVSGCYILRPWSFAIWKAIKEYIDKEITQMGVQECYFPIFVTRTVLEKEKAH 1079

Query: 86   YDSYGKEMLRLADRND----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
               +  E+  +    +    + +   PT E VM   +   +KS   LP    Q     R 
Sbjct: 1080 ITDFAPEVAWVTKCGESNLSEPIAIRPTSETVMYPAYAKWLKSDTELPLKLNQWNNVVRW 1139

Query: 142  ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            E +     +R+REFL ++ ++                                       
Sbjct: 1140 EFKDPKPFLRTREFLWQEGHTA-------------------------------------- 1161

Query: 202  IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATS 260
                    F   A+  E  +     +    +  +      I    +  E++    Y  T 
Sbjct: 1162 --------FATKAEADEEVLMILNMYA--RVYEDLLAVPVIKGRKTEKEKFAGGDYTTTV 1211

Query: 261  DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            +                S R I+     + G  +S   +   +GA   D    +     G
Sbjct: 1212 EAFIS-----------TSGRAIQGATSHHLGQNFSKMFNIQVEGAVESDEKTFVYQNSWG 1260

Query: 321  -AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARL 372
               R +  +I    D KG++ P +VA  +  ++             ++    C K+   L
Sbjct: 1261 LTTRTIGVMIMIHGDDKGLVLPPNVACIQAIIVPCGITVNTTPQQRELLFSECNKLLDEL 1320

Query: 373  -SKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
                   V  D    +  G +F   +L G P+++ +G K +  ++V    R    R   +
Sbjct: 1321 SKDKSLRVKADYRNNRTPGWKFNHWELKGVPVRIELGPKDLEKNQVTFVRRDNFQRVFAN 1380

Query: 431  LEEVINYASHRFSN 444
              EV+       ++
Sbjct: 1381 RSEVLVALHTLLTD 1394


>gi|303320217|ref|XP_003070108.1| prolyl-tRNA synthetase, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240109794|gb|EER27963.1| prolyl-tRNA synthetase, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 668

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 90/242 (37%), Positives = 124/242 (51%), Gaps = 2/242 (0%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           SK ++PI       A   S  L+++ G I Q   GIY  LPLG +    +  +I +    
Sbjct: 43  SKIWVPIAPVPKNLAAQDSTALLVQAGFIRQAYAGIYHLLPLGLRVQKKLENLIDKHMES 102

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            GA ++ +  L S  LW  SGR      E+ R  DR     +  PTHEE +T +      
Sbjct: 103 LGASKLFLSALSSQLLWKLSGRLHD-DSEVFRFLDRKYAPFLLAPTHEEEITKLVGGLTN 161

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SY+ LP   YQI  K+RDE RPR G++R+REFLMKD Y+FD + E +  SYN +  +Y+R
Sbjct: 162 SYKELPLRVYQISRKYRDERRPRQGLLRAREFLMKDLYTFDYSTEEAMKSYNSVKEAYVR 221

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFDDI 242
           +F  L L  I   A+SG +GG+L+HEF +    GE  V  CSK    F     +      
Sbjct: 222 LFDELKLPYIVAAADSGNMGGNLNHEFHLENSKGEDIVVSCSKCNYKFNEELTDGHASKF 281

Query: 243 IS 244
            S
Sbjct: 282 AS 283



 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 88/194 (45%), Gaps = 21/194 (10%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-------------KGADGKDHYVQM 314
                +    +   IE+GH F  GT+YS P+ AT              K +      +QM
Sbjct: 478 CSKCEDGVVTTHTTIEMGHTFLLGTRYSSPLQATVAIDPAKSVNADGAKESPKSVVPLQM 537

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G YGIG  R++AAV +   D +G+ WP ++APF   ++   A  +      +KIY  ++ 
Sbjct: 538 GCYGIGVSRMIAAVADILADSRGLNWPRAMAPFSAIIVPGLAFQED----SKKIYDHIAS 593

Query: 375 --VG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDMS 430
              G  D   DD    +  +   ADL G P+  +VG  +     VE++ R    +R D+S
Sbjct: 594 YHNGSIDTILDDRERPLIRKLKDADLTGIPVICVVGKSWERHRNVEVQCRRLNNLRTDVS 653

Query: 431 LEEVINYASHRFSN 444
           L+E+ ++ S     
Sbjct: 654 LDELPSFISSLLDK 667


>gi|193216459|ref|YP_001999701.1| prolyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
 gi|193001782|gb|ACF06997.1| prolyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
          Length = 476

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 79/416 (18%), Positives = 147/416 (35%), Gaps = 68/416 (16%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEM 93
            SKG   + PL     DN+  I  E+        + +P L    L   E    + +  E+
Sbjct: 32  SSKGAIIFKPLSFGIWDNIRKIADEKFKEKDVANVYLPLLIPEGLLQKEKDHLEGFNPEL 91

Query: 94  LRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
             + +   K         PT E +  D FR+ I+S+ +LP  + Q     R E +     
Sbjct: 92  ATVTEVGGKKLAEKFFIRPTSEVLFADFFRNEIESHNDLPLIYNQWVNVLRWE-KTTNPF 150

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+REFL ++          S  +    +                               
Sbjct: 151 LRTREFLWQE---GHTMHANSAEAIKLTYEMLN--------------------------- 180

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                      V+         IP        I    +  E+++              F 
Sbjct: 181 -----------VYIDLVQNYLAIPV-------IAGNKTEHEKFSG-----------ADFT 211

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E      + ++ G   Y    ++      FK  + +  +    S+GI + R++ A+I
Sbjct: 212 LTIEAMMKDGKALQSGTSHYLAQNFTKAFEIAFKNKNNEQEFAYGTSWGI-STRLLGALI 270

Query: 330 ESSHDGKGIIWPDSVAPFKISLI-NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +  D +GII P  +AP +I +I  +   D    +   +I  +L+KV   V  DD  +  
Sbjct: 271 MTHGDDRGIIIPPKIAPVQIDIIEILAKKDPKVHEVALEITKKLNKV-FAVKLDDSDKSP 329

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G + A +++ G PL++ VG   + +++V    R    +  + L+++   A     +
Sbjct: 330 GFKAANSEIHGTPLRIEVGPNDLINNQVTFVRRDKIEKISVPLDKIEARAKEILDS 385


>gi|50290081|ref|XP_447472.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526782|emb|CAG60409.1| unnamed protein product [Candida glabrata]
          Length = 552

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 94/340 (27%), Positives = 149/340 (43%), Gaps = 5/340 (1%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYD 87
            G I +   G+++WLPLG + L  + A++R+  +    AIE+S+ +L     W ++GR+D
Sbjct: 38  LGFIRRTQSGLFNWLPLGLRTLHKLEALVRKRMDEDASAIEVSLSSLSPKINWEKTGRWD 97

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
               E+ ++ D N       PT EE +T + +++IKSY++LP T YQI  K+RDE RPR 
Sbjct: 98  K-SNELFKVKDNNAFEYCLTPTCEEDITSLMKNYIKSYKDLPITAYQISRKYRDEKRPRG 156

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G++R REF+MKDAYSF  + E +   +NKM   Y RIF  L +      A+SG IGGDLS
Sbjct: 157 GLLRGREFIMKDAYSFASSEEQAIEIFNKMDSVYDRIFSDLKIPYKAAYADSGEIGGDLS 216

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E+  L   GE  VF            +     +   + S            S+ H   +
Sbjct: 217 KEYHFLNSFGEDTVFSCDSCGTSSTIEKCNSLPEEDGMYS---GDVGVVYGLSEDHTTLV 273

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
               P  ++ +    +               +         ++   M S  +  M V   
Sbjct: 274 CFYYPAERQFNWNLAQSVMENDLDMALKDVGNDKILEMYQSENEDYMFSKILRVMDVRIN 333

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
              +  D     +  +       +  + A D+     CE 
Sbjct: 334 SRSNFPDFPLSKYLKNNFGQIDGISIVDATDKEICGKCED 373



 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 97/243 (39%), Gaps = 15/243 (6%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           +  ++  +         MD  I S +   D  +S             +  D  ++++   
Sbjct: 311 MYQSENEDYMFSKILRVMDVRINSRSNFPDFPLSKYLKNNFGQIDGISIVDATDKEICGK 370

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVI 329
             +    ++  IEVGHIF+ G KYS P    FK  +  D  +  MG YGIG  R++ A  
Sbjct: 371 CEDGTLHASNSIEVGHIFHLGDKYSKPFEVNFKDENNSDDSIVSMGCYGIGISRLIGAAA 430

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV-FWDD--MGE 386
           E   D  G+ WP          +++   +     A   +   L K   D    DD     
Sbjct: 431 EIGRDHMGLRWP---QVIAPYQVSVVTSNNEGMVAINDMKKSLMK-NLDTFDLDDLHRST 486

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR--LTG-----IREDMSLEEVINYAS 439
             G + A++  +G P+ VI+G+K   + ++E++ +    G      ++ +   +VI+  +
Sbjct: 487 GFGGRIALSHAIGIPICVIIGTKSWPNVEIEVRGKKWDNGDDTPIEKKSVHYSDVIDTVN 546

Query: 440 HRF 442
              
Sbjct: 547 ELL 549


>gi|15237183|ref|NP_200065.1| OVA6 (OVULE ABORTION 6); ATP binding / aminoacyl-tRNA ligase/
           nucleotide binding / proline-tRNA ligase [Arabidopsis
           thaliana]
 gi|10177035|dbj|BAB10183.1| prolyl tRNA synthetase [Arabidopsis thaliana]
 gi|34365755|gb|AAQ65189.1| At5g52520 [Arabidopsis thaliana]
 gi|51970984|dbj|BAD44184.1| prolyl tRNA synthetase [Arabidopsis thaliana]
 gi|332008841|gb|AED96224.1| prolyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 543

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 133/421 (31%), Gaps = 76/421 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +  +   TG   M  P       +  E+   + +  E+  +     K
Sbjct: 100 PYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTVGGGK 159

Query: 103 AMIY----GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E ++  +F   I SYR+LP    Q     R E+R     +R+ EFL +
Sbjct: 160 ELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMR-TKPFIRTLEFLWQ 218

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +           + +  +                                          
Sbjct: 219 E---GHTAHATPEEAEKEAKQMIEIYTRFAF----------------------------- 246

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                           E T    I    S +E +                    E     
Sbjct: 247 ----------------EQTAIPVIPGRKSKLETFAG-----------ADITYTIEAMMGD 279

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G     G  +S      F   +G+  +V   S+ + + R V  +I +  D  G+
Sbjct: 280 RKALQAGTSHNLGQNFSRAFGTQFADENGERQHVWQTSWAV-STRFVGGIIMTHGDDTGL 338

Query: 339 IWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
           + P  +AP ++ ++ I   D        A   +   L   G  V  DD  ++  G +F  
Sbjct: 339 MLPPKIAPIQVVIVPIWKKDTEKTGVLSAASSVKEALQTAGVRVKLDDTDQRTPGWKFNF 398

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLE--EVINYASHRFSNNRPV 448
            ++ G PL++ +G + VS + V +  R      G    +S+E   ++ Y   +    +  
Sbjct: 399 WEMKGIPLRIEIGPRDVSSNSVVVSRRDVPGKAGKVFGISMEPSTLVAYVKEKLDEIQTS 458

Query: 449 L 449
           L
Sbjct: 459 L 459


>gi|84489803|ref|YP_448035.1| prolyl-tRNA synthetase [Methanosphaera stadtmanae DSM 3091]
 gi|114152212|sp|Q2NFL1|SYP_METST RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|84373122|gb|ABC57392.1| ProS [Methanosphaera stadtmanae DSM 3091]
          Length = 469

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 76/452 (16%), Positives = 155/452 (34%), Gaps = 80/452 (17%)

Query: 1   MR-RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           M+  S++F  IL+E    AE+   +  ++         G+  WLP G +        ++E
Sbjct: 1   MKNFSEWFHNILEE----AELMDARYPIK---------GMSVWLPRGFQIRKYALNALQE 47

Query: 60  EQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
             ++    E+  P L   ++L  E+     + +E+  +     + +       E +    
Sbjct: 48  LLDK-DHEEVLFPMLIPQSELAKEAIHVKGFEEEVYWVTKGGKRDLN------EHLALRP 100

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            S    Y                                                 +   
Sbjct: 101 TSETSIYPMFSLWVRSH--------------------------------------MDLPI 122

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             Y  +              + P+             T       ++  +   I    T 
Sbjct: 123 KVYQTVNTFRYETKH-----TRPLIRVREITTFNETHTAHATEEEAEKEVMEGIEIYKTF 177

Query: 239 FDDIISLNSI--VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           FD++    SI    +W     +   +  + +    P+ K      +++  +   GT ++ 
Sbjct: 178 FDELGIPYSISKRPEWDKFPGSKYTMAFDMIM---PDGK-----TLQIATVHNLGTTFAH 229

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-- 354
                F+  DG   YV    YG+ + RV+A++I +  D KG+  P  VAP ++ +I I  
Sbjct: 230 TFDIQFENEDGTHDYVHQVCYGL-SDRVIASLIAAHGDEKGLSLPPVVAPEQVIIIPIIF 288

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           K +  V  +  + +   L   G  V  D    + G ++   +  G PL++ VG + + ++
Sbjct: 289 KENQDVVLNFTDNLEKLLKNNGIRVKQDKRELRPGKKYYEWEKRGVPLRIEVGPRDIENN 348

Query: 415 KVEIKHRLTGIREDMSLEE--VINYASHRFSN 444
            + I  R TG +E +  +E  +++    R  +
Sbjct: 349 TIVINRRDTGDKEFVDYDENTIVDVVKDRLDS 380


>gi|90410627|ref|ZP_01218643.1| threonyl-tRNA synthetase [Photobacterium profundum 3TCK]
 gi|90328868|gb|EAS45152.1| threonyl-tRNA synthetase [Photobacterium profundum 3TCK]
          Length = 195

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 68/198 (34%), Gaps = 18/198 (9%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E   A Y    +     L D L    +     ++       G        AT+ G D + 
Sbjct: 9   EGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLDFALPERLG--------ATYVGEDNER 57

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
           H    +    +G++     ++   + G    W        +++           +  ++I
Sbjct: 58  HTPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPQQAVVMNIT------DSQSEYAQEI 111

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L K G  V  D   E+IG +     L   P  ++ G K V   ++ ++ R       
Sbjct: 112 VKKLQKCGIRVNADLRNEKIGFKIREHTLKRVPYMLVCGDKEVEAGEIAVRTRKGKDLGK 171

Query: 429 MSLEEVINYASHRFSNNR 446
           + ++E++ +     S+ +
Sbjct: 172 LKIDELVAFLQQEISSRK 189


>gi|302537186|ref|ZP_07289528.1| prolyl-tRNA synthetase [Streptomyces sp. C]
 gi|302446081|gb|EFL17897.1| prolyl-tRNA synthetase [Streptomyces sp. C]
          Length = 470

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/408 (13%), Positives = 124/408 (30%), Gaps = 60/408 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +       GA     P       L  E+   + +  E+  +     K
Sbjct: 41  PYGYGLWERMQQEMDARIKEAGAQNAYFPLFIPQSYLTKEAEHVEGFAPELAVVTHGGGK 100

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 101 ELEEPVVVRP-------------------------------------------------- 110

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +       ++K   SY  +   +   +  +R E  P     + EF+     G T   
Sbjct: 111 --TSETIINDYFSKWVQSYRDLPLLINQWANVVRWEMRPRVFLRTSEFL--WQEGHTAHA 166

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             +D  D+        + D ++    ++       A           +L E      + +
Sbjct: 167 TYEDARDYAARIHRDVYGDFMTNVLGIDVVLGRKTAKERFAGAINTLTL-EGMMGDGKAL 225

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++G     GT ++   +  +   +G+   V   S+G+ + R+V  +I S  D  G+  P 
Sbjct: 226 QMGTSHELGTNFAKAFNTQYLSKEGQQELVWQTSWGV-STRMVGGLIMSHGDDNGLRVPP 284

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFP 401
            +A  ++ ++ I            ++  RL   G  V  DD  +   G +    +L G P
Sbjct: 285 RLANVQVVVMAI--KGDEAVAKVRELGDRLKAAGIRVHVDDRVDTPFGRRAVDWELKGVP 342

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +++ +G + +      +  R+ G +  + ++ +++        ++  L
Sbjct: 343 VRIEIGPRDLEAGTAMLARRIPGGKTPVQIDALVDLLPKVLDEDQAQL 390


>gi|195504997|ref|XP_002099319.1| GE10841 [Drosophila yakuba]
 gi|194185420|gb|EDW99031.1| GE10841 [Drosophila yakuba]
          Length = 996

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 122/422 (28%), Gaps = 73/422 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y            +      E  R G  E   P   S   L  E      +  E+  
Sbjct: 527 SGCYILRHWSFAIWKAIKTWFDAEITRMGVKECYFPIFVSKAVLEKEKTHIADFAPEVAW 586

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D  +       PT E VM   +   ++SYR+LP    Q     R           
Sbjct: 587 VTKSGDSDLAEPIAVRPTSETVMYPAYAKWVQSYRDLPIRLNQWNNVVR----------- 635

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF                         +LR    L  +     A+      + + E +
Sbjct: 636 -WEFKQPT--------------------PFLRTREFLWQEGHTAFADKE----EAAKEVL 670

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            + D     +  +       +    T+ +               Y  T +          
Sbjct: 671 DILD--LYALVYTHLLAIPVVKGRKTEKEKFA---------GGDYTTTVEAFISA----- 714

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 S R I+     + G  +S      ++  + +       +      R +  +I  
Sbjct: 715 ------SGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVYQNSWGLTTRTIGVMIMV 768

Query: 332 SHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYARLSKVGCDVFWDDM 384
             D +G++ P  VA  +  ++     +   D       DAC+ +  RL   G     D  
Sbjct: 769 HADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKALEKRLVGGGVRCEGDYR 828

Query: 385 GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRF 442
                G +F   +L G PL++ VG K +   + V ++ R TG +  + L +V        
Sbjct: 829 DNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVR-RDTGEKITIPLADVEKKIPALL 887

Query: 443 SN 444
             
Sbjct: 888 ET 889


>gi|261349933|ref|ZP_05975350.1| threonine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
 gi|288860716|gb|EFC93014.1| threonine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
          Length = 608

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/404 (15%), Positives = 125/404 (30%), Gaps = 40/404 (9%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           W P G+   D +   +       GA+ +  P     D    +     +G+   R   + +
Sbjct: 219 WFPKGRLVRDLLADYVYNLVVDQGAMPIETPIFYDLDNEAINVHAAKFGERQYRTDTKKN 278

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSREFLMKD 159
             ++           +      +++NLP   Y++    FR E +    G+ R R F M D
Sbjct: 279 --LMLRFACCFGAFRVMADPFITWKNLPAKLYELSTYSFRFEKKGEVVGLKRLRAFTMPD 336

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +SF      +   ++K     ++    L +    +   +                  E 
Sbjct: 337 FHSFCADMNSTLEEFSKQTDMCIQTGVDLDVNYEIIFRATKDFYD-------------EN 383

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           + +          P       +     S    + A              D L        
Sbjct: 384 KEWMYSIGKKIGKPVLLEILPERKHYWSCKIDFAA-------------IDYLGRPIENPT 430

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGI 338
             I+V        +       T+ G DGK+HY  +      G++  V   +      +  
Sbjct: 431 VQIDV--------ESGKRFDITYLGEDGKEHYPTILHCSPTGSIERVICSLLEKTAIELD 482

Query: 339 IWPDSVAPF-KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                +  +     + I    +  +D   ++Y +++     V  DD  E +G +   A  
Sbjct: 483 EKAPMLPTWLSPIEVRIITVGEDHKDFANELYDKINAENIRVDVDDRDESVGKKIRNAAT 542

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              P   +VG          +  R TG + DM+++E+I     +
Sbjct: 543 EWIPYIFVVGDNEKESGVFSVTVRETGEKVDMTVDELIKEVLDK 586


>gi|222445506|ref|ZP_03608021.1| hypothetical protein METSMIALI_01146 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435071|gb|EEE42236.1| hypothetical protein METSMIALI_01146 [Methanobrevibacter smithii
           DSM 2375]
          Length = 608

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/404 (15%), Positives = 125/404 (30%), Gaps = 40/404 (9%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           W P G+   D +   +       GA+ +  P     D    +     +G+   R   + +
Sbjct: 219 WFPKGRLVRDLLADYVYNLVVDQGAMPIETPIFYDLDNEAINVHAAKFGERQYRTDTKKN 278

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSREFLMKD 159
             ++           +      +++NLP   Y++    FR E +    G+ R R F M D
Sbjct: 279 --LMLRFACCFGAFRVMADPFITWKNLPAKLYELSTYSFRFEKKGEVVGLKRLRAFTMPD 336

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +SF      +   ++K     ++    L +    +   +                  E 
Sbjct: 337 FHSFCADMNSTLEEFSKQTDMCIQTGVDLDVNYEIIFRATKDFYD-------------EN 383

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           + +          P       +     S    + A              D L        
Sbjct: 384 KEWMYSIGKKIGKPVLLEILPERKHYWSCKIDFAA-------------IDYLGRPIENPT 430

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSHDGKGI 338
             I+V        +       T+ G DGK+HY  +      G++  V   +      +  
Sbjct: 431 VQIDV--------ESGKRFDITYLGEDGKEHYPTILHCSPTGSIERVICSLLEKTAIELD 482

Query: 339 IWPDSVAPF-KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                +  +     + I    +  +D   ++Y +++     V  DD  E +G +   A  
Sbjct: 483 EKAPMLPTWLSPIEVRIITVGEDHKDFANELYDKINAENIRVDVDDRDESVGKKIRNAAT 542

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              P   +VG          +  R TG + DM+++E+I     +
Sbjct: 543 EWIPYIFVVGDNEKESGVFSVTVRETGEKVDMTVDELIKEVLDK 586


>gi|322490369|emb|CBZ25629.1| putative bifunctional aminoacyl-tRNA synthetase [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 727

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 124/417 (29%), Gaps = 73/417 (17%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           +  MI  +   G Y   P        V   +  +  R G  +   P   S   L  E   
Sbjct: 239 KAEMIEYYDVSGCYIIRPWAYYVWKCVQRFLGGKIERLGVEDCYFPMFVSRSCLEREKDH 298

Query: 86  YDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +    D  +       PT E VM   +   I+S+R+LP          R 
Sbjct: 299 IEGFAPEVAWVTRAGDTELEQPVAVRPTSETVMYPYYAKWIRSHRDLPVRLNMWNNVIRW 358

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E       +R+REFL ++ +                                        
Sbjct: 359 EFSHPTPFIRTREFLWQEGHCA-------------------------------------- 380

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                       A+    +V    +                       +     Y  T +
Sbjct: 381 ---------WAKAEECAKEVLDILECYASVYEQLLAVPVVRGRKTEKEKFAGGHYTTTVE 431

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG- 320
              E +            RG +       G  +       F+  +  +  +       G 
Sbjct: 432 TFIEAVG-----------RGCQGATSHNLGQNFGKMFDIRFQDPENNEQTLIPWQNSWGL 480

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLS 373
           + RV+  +I    D +G++ P  VA  ++ +I +        +A       C ++ + L 
Sbjct: 481 STRVIGVMIMVHGDNRGMVMPPRVASTQVIIIPVGITKDTTEEARQGLLASCRRLESELC 540

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           + G     D       G +F   ++ G PL+V +G + +++  + +  R +G R  +
Sbjct: 541 EGGVRAKCDLRDNYSPGWRFNHWEVKGVPLRVELGPRELAERSLAVAVRHSGARHSV 597


>gi|189501728|ref|YP_001957445.1| prolyl-tRNA synthetase [Candidatus Amoebophilus asiaticus 5a2]
 gi|259511573|sp|B3ER64|SYP_AMOA5 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|189497169|gb|ACE05716.1| hypothetical protein Aasi_0277 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 491

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 127/412 (30%), Gaps = 48/412 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G  +  P G    + + AI+ +    TG      P       L  E+   + + KE   +
Sbjct: 33  GCMTIRPYGFAIWEKMQAILDKAFKATGHENAYFPIFIPKSYLNREAAHVEGFAKECAVV 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                     +           +    + E              
Sbjct: 93  TH-----------------------YRLKATEDGQQVVVDPSAKLEEELIVRPTS----- 124

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                          +SY     SY  +   +      +R E        + EF+     
Sbjct: 125 ----------ETIIWNSYKNWIQSYRDLPLLINQWCNVVRWEMRTRLFLRTAEFL--WQE 172

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T      +     +   N    D       +                +   ++ E   
Sbjct: 173 GHTAHATQAEAEQEALQMLNIYA-DFGKDYLAIPFLKGIKTEHERFAGAEETYTI-EALM 230

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G +++     TF    G+  YV   S+G+   R++ A++ +  D K
Sbjct: 231 QDGKALQAGTSHFLGQRFAKAFEVTFTNQAGQLDYVWGTSWGL-TTRLIGALVMTHSDDK 289

Query: 337 GIIWPDSVAPFKISLINIK---AHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQF 392
           G++ P  VAP +I +I I       +  +   + I  +L         D   E + G +F
Sbjct: 290 GLVLPPRVAPIQIVIIPIYRTQEEKEAIQQQAQHIQQQLIAHNISAKLDGRDEHKPGWKF 349

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A  +L G P+++ +G   ++++ VE+  R T  +  +  + +I        +
Sbjct: 350 AEYELKGVPIRMAIGPNDLANNTVELTRRDTSEKTTVPTDNIIVVVKSMLDS 401


>gi|242793409|ref|XP_002482155.1| prolyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
 gi|218718743|gb|EED18163.1| prolyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
          Length = 593

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/430 (15%), Positives = 136/430 (31%), Gaps = 81/430 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
            G +   P      + +     ++  + G    S P   S D+   E    + +  E+  
Sbjct: 109 SGCFILKPASYFVWETIQNWFNDKIKKMGVRNCSFPLFVSEDVLQREKDHIEGFAAEVAW 168

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        ++ +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 169 VTHAGSTPLERKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLR 228

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT E +     ++   Y  ++  L                       
Sbjct: 229 TREFLWQEGHTAHLTEESAAEEVLQILDHYAHVYEDL----------------------- 265

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                         +    +  E++   Y  T       +   +
Sbjct: 266 -------------------------LAVPVVRGKKTEKEKFAGGYYTT------TVEGYI 294

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD------GKDHYVQMGSYGIGAMRVV 325
           P     + RGI+ G     G  +S     T +  +      G   YV   S+G+ + R +
Sbjct: 295 P----ATGRGIQGGTSHCLGQNFSKMFGITVEDPNAKGEDKGASLYVWQNSWGL-STRTI 349

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLSKVGCD 378
             ++    D +G++ P  VA  +  ++ +        +        C ++ ++L+ VG  
Sbjct: 350 GVMVMIHSDNRGLVLPPRVAEIQTIIVPVGITKNTTDEERAQIYKDCSELASKLAAVGVR 409

Query: 379 VFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMSLEEV 434
              D       G +F   +L G PL++  G        +    R       +  + L  +
Sbjct: 410 TETDLRDGYSPGYKFNDWELRGVPLRLEFGPGEAKGGFITASRRDIPGKDGKTTIPLNSL 469

Query: 435 INYASHRFSN 444
                     
Sbjct: 470 TTAVPELLDT 479


>gi|303284080|ref|XP_003061331.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457682|gb|EEH54981.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 489

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/428 (16%), Positives = 141/428 (32%), Gaps = 89/428 (20%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD---- 98
           P G    + +   +  +   TG      P L     +  E+   + +  E+  +      
Sbjct: 35  PYGYALWEGIQRWMDAKFKTTGVENAYFPQLIPYSFITKEASHVEGFSPELAVVTQGGGK 94

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
             ++ ++  PT E ++  +F   I+SYR+LP    Q     R E+R R  + R+ EFL +
Sbjct: 95  TLEEPLVVRPTSETIVNHMFSQWIQSYRDLPLLMNQWANVHRWEMRTRPFI-RTLEFLWQ 153

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++   T E ++    +M                                         
Sbjct: 154 EGHTAHATAEEAEERAVQMID--------------------------------------- 174

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                 +   D            I+   S VE +                    E     
Sbjct: 175 ---VYREFAEDVAA------MPVIVGRKSRVETFAG-----------ANNTYTIEAMMGD 214

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD---- 334
            R ++ G     G  ++     TF   +GK  +V   S+G+ + R++  +I +  D    
Sbjct: 215 KRALQAGTSHNLGQNFAKAFDTTFLDENGKTQHVHQSSWGV-STRLIGGIIMTHGDDVGL 273

Query: 335 -------GKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDD- 383
                        P ++AP ++ ++ I       +    A   +   L+  G  V  DD 
Sbjct: 274 RRVLYTGPHTTALPPALAPIQVVVVPIAQKNKDKESVNAAASAVVKTLTDAGVRVKLDDD 333

Query: 384 -MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLE--EVIN 436
                 G +FA  ++ G P++V +G K V++    +  R      G    +S+E   ++ 
Sbjct: 334 ERN-SPGWKFAQWEMKGVPIRVEIGPKDVANDACVLARRDKPGKEGKEFGVSVEPSALVG 392

Query: 437 YASHRFSN 444
                 ++
Sbjct: 393 KVRETLAD 400


>gi|297661955|ref|XP_002809493.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase [Pongo abelii]
          Length = 1462

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/429 (14%), Positives = 121/429 (28%), Gaps = 81/429 (18%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y   P      + +      E  + G      P   S   L  E      +  E+  
Sbjct: 989  SGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHIADFAPEVAW 1048

Query: 96   LADRNDKAMIYG-----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            +       +         +   +   +++  ++S+R+LP    Q     R E +     +
Sbjct: 1049 VTRSGKTELAEPIAIRPTSETVMYPGVWQKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFL 1108

Query: 151  RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            R+REFL ++ +S   T E +     ++   Y +++                         
Sbjct: 1109 RTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYE------------------------ 1144

Query: 211  IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFD 269
                                    E      +    +  E++    Y  T +        
Sbjct: 1145 ------------------------ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISA--- 1177

Query: 270  SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAV 328
                    S R I+ G   + G  +S      F+                G   R +  +
Sbjct: 1178 --------SGRAIQGGTSHHLGQNFSKMFEIVFEDPKTPGEKQFAYQNSWGLTTRTIGVM 1229

Query: 329  IESSHDGKGIIWPDSVAPFKISLIN--------IKAHDQVCRDACEKIYARLSKVGCDVF 380
                 D  G++ P  VA  ++ +I         +K   +     C     RL  V   V 
Sbjct: 1230 TMVHGDNMGLVLPPRVACVQVVIIPCGITKCTFLKKTKKPLIAKCNDYRRRLLSVNIRVR 1289

Query: 381  WDDMGE-QIGSQFAVADLLG---FPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVI 435
             D       G +F      G    P+++ VG + +     V ++ R TG +  ++  E  
Sbjct: 1290 ADLRDNYSPGWKFNHWGAQGKFLIPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVAENEAE 1348

Query: 436  NYASHRFSN 444
                    +
Sbjct: 1349 TKLQAILED 1357


>gi|297202644|ref|ZP_06920041.1| prolyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197713219|gb|EDY57253.1| prolyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 471

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/408 (14%), Positives = 125/408 (30%), Gaps = 59/408 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + + A +      TG      P L     L  E+   + +  E+  +     K
Sbjct: 41  PYGYGLWERMQAEMDARIKETGTQNAYFPLLIPQSYLTREADHVEGFAPELAVVTHGGGK 100

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 101 ELEEPAVVRP-------------------------------------------------- 110

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +       ++K   SY  +   +   +  +R E  P     + EF+     G T   
Sbjct: 111 --TSEMIINDYFSKWVQSYRDLPLLINQWANVVRWELRPRLFLRTTEFL--WQEGHTAHA 166

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             +D   F        ++D ++    ++                   +L E      + +
Sbjct: 167 TQEDARAFASHIHRQVYEDFMTNVLAMDVVPGRKTVKERFAGAINTLTL-EGMMGDGKAL 225

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++      G  ++   + ++   DG    V   S+G    R++ A++    D  G+  P 
Sbjct: 226 QMATSHELGQNFAKAFNTSYLSKDGTQELVWQTSWGS-TTRMIGALVMMHGDDNGLRVPP 284

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFP 401
            +A  ++ ++ I   D+        I  RL   G  V  DD  +   G +    +L G P
Sbjct: 285 RLAQTQVVVLAI-KGDEQVLAKVRDIGDRLKAAGLRVHVDDRTDTPFGRRAVDWELKGVP 343

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++V VG + +      +  R+ G +E +++++++         ++ +L
Sbjct: 344 VRVEVGPRDLESGTAMVARRIPGGKEAVAVDDLVRLLRAVLEEDQALL 391


>gi|302653826|ref|XP_003018730.1| hypothetical protein TRV_07235 [Trichophyton verrucosum HKI 0517]
 gi|291182401|gb|EFE38085.1| hypothetical protein TRV_07235 [Trichophyton verrucosum HKI 0517]
          Length = 533

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 132/412 (32%), Gaps = 52/412 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   + P G   L+ +   +R +  + G  E+  P +    LW  SG + +Y  +M  +
Sbjct: 85  PGSPLFRPNGTHILNKLITFLRAQYKQYGFREVLTPNIYKQSLWEVSGHWQNYKDDMYEV 144

Query: 97  ADRNDKA----------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             R D                P +      +F+S   SYR LP  +       R+E+   
Sbjct: 145 GGRGDTGETSDTSENEIYGLKPMNCPGHCLLFKSQKHSYRELPVRYADFSPLHRNEVSGS 204

Query: 147 -FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+ R R F   D + F    +               +    GL               
Sbjct: 205 LSGLTRVRRFHQDDGHIFCRPGQIGSE-IQLALKFADTVLQTFGLADGYR---------- 253

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                +VL+   E     S +  +          D+      + E   A Y    D+   
Sbjct: 254 -----LVLSTRPEKDFIGSLEQWENAEQQLRQALDNSGLSWELNEGDGAFYGPKIDL--- 305

Query: 266 KLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           ++ DS  +  ++S   +++     F                  G+   V +     G++ 
Sbjct: 306 QIQDSQGKYHQLSTIQLDMNLPQRFELEYLVPEGSEEYDPATGGRATPVLIHRAIFGSLE 365

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIY-------ARLSKV 375
              A++    +     WP  ++P +  L+ I    +Q   DA  KI        +R S  
Sbjct: 366 RFFALLI---ERYNGQWPFWLSPRQAILLTIGKGLEQAAEDAVAKISGFEPITSSRPSST 422

Query: 376 G---------CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           G          +V  D     +  +   A    + L  I+G K V+D  V+I
Sbjct: 423 GLPLSPLQPTFNVDLDLASRSLPKKIHDAHAARYNLVFIMGPKNVADGSVDI 474


>gi|212535538|ref|XP_002147925.1| prolyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
 gi|210070324|gb|EEA24414.1| prolyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
          Length = 594

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/405 (17%), Positives = 132/405 (32%), Gaps = 78/405 (19%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
            G +   P      + +     ++  + G    S P   S D+   E    + +  E+  
Sbjct: 110 SGCFILKPSSYFVWETIQNWFNDKIKKMGVRNCSFPLFVSEDVLQREKDHIEGFAAEVAW 169

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        ++ +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 170 VTHAGSTPLERKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLR 229

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT EG+     ++   Y  ++  L                       
Sbjct: 230 TREFLWQEGHTAHLTEEGAAEEVMQILDHYAHVYEDL----------------------- 266

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                         +    +  E++   Y  T       +   +
Sbjct: 267 -------------------------LAVPVVRGKKTEKEKFAGGYYTT------TVEGYI 295

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKG------ADGKDHYVQMGSYGIGAMRVV 325
           P     + RGI+ G     G  +S     T +         G   +V   S+G+ + R +
Sbjct: 296 P----ATGRGIQGGTSHCLGQNFSKMFGITVEDPNAKPDEKGASLHVWQNSWGL-STRTI 350

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLSKVGCD 378
             ++    D KG++ P  VA  +  ++ +        +        C ++ ++LS VG  
Sbjct: 351 GVMVMIHSDNKGLVLPPRVAEIQTIIVPVGITKSTTDEERAQIYNDCAELASKLSAVGVR 410

Query: 379 VFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              D       G +F   +L G PL++  G        V    R 
Sbjct: 411 AETDLRDGYSPGYKFNDWELRGVPLRLEFGPGEAKGGFVTAARRD 455


>gi|318061953|ref|ZP_07980674.1| threonyl-tRNA synthetase [Streptomyces sp. SA3_actG]
          Length = 407

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/433 (15%), Positives = 121/433 (27%), Gaps = 51/433 (11%)

Query: 16  RDAEIASHKLMLRT----GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           RD     H  + R     G       G+   LP G      +   +R  +   G   +  
Sbjct: 8   RDH---DHHRLGRALGLYGTDPLLGAGLPYLLPDGASVRHALEEYVRGLEVADGYQHVHS 64

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P L   +L+V SG +  Y  +M    +   +  +  P+       I+R+  +SYR LP  
Sbjct: 65  PVLGKQELYVRSGHWAHYRADMFPPMEVGGEHFVLRPSLCPHHALIYRAQARSYRELPLR 124

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
             ++   FR E     G +     +  +       PE                +  LGL 
Sbjct: 125 IAELGGMFRAEPSGTLGGLTRVRAIHLNDAHLFCAPESLAGEVAGALALIRTAYRALGLA 184

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDFDDIISLNSIVE 250
               R                    GE   +  ++   +    +                
Sbjct: 185 PSRYRLSL----------------PGEDAKYALAEGVWERSAAALAEALAGAGLDWEEER 228

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    DV   +  D+      +S    +      FG  Y             +  
Sbjct: 229 GEAAFYGPKIDV---QARDAAGREFTLSTVQADFHQPTAFGLDYR-------AADGSRPR 278

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  V A +   H G    W   V    + +       +   +A E    
Sbjct: 279 PVMVHRSVLGSLERVLARLIEVHGGAFPAWLAPVQVGVVPVG------EEQEEAAESFVR 332

Query: 371 RLSKVGCDVFWDDM-----GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           R    G                + ++   A L   P   ++G++  +  +V ++ R    
Sbjct: 333 RCRAAGLRA----RRYPAHAGTLAARVRQARL--VPHLAVLGAREAAAGEVALRRRDGER 386

Query: 426 REDMSLEEVINYA 438
                  E +   
Sbjct: 387 LPARPEAEAVALL 399


>gi|256820371|ref|YP_003141650.1| prolyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
 gi|256581954|gb|ACU93089.1| prolyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
          Length = 492

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/411 (14%), Positives = 124/411 (30%), Gaps = 45/411 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G     P G    + + A +      TG      P       +      +    E     
Sbjct: 33  GCMVIKPYGYAIWEKMQAELDRMFKETGHTNAYFPLFVPKSYFEA----EEKNAEGFAKE 88

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
                         E    +     K    L                             
Sbjct: 89  CAVVTHYRLKADPNEKGKLMVDPEAKLEEELIVRPT------------------------ 124

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                   +     ++Y     SY  +   +   +  +R E        + EF+     G
Sbjct: 125 --------SEAIIWNTYKNWIQSYRDLPILINQWANVVRWEMRTRLFLRTAEFL--WQEG 174

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            T      + ++      N   D +   N +         + S+           E    
Sbjct: 175 HTAHATKAEAIEEAQKMMNVYADFV--ENFMAVPVIKGVKSESERFAGADDTYCIEALMQ 232

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + ++ G   + G  ++      +   +GK  YV   S+G+ + R++ A+I +  D  G
Sbjct: 233 DGKALQAGTSHFLGQNFAKAFDVKYVSKEGKQEYVWASSWGV-STRLMGALIMTHSDDNG 291

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMG-EQIGSQFA 393
           ++ P  +AP ++ ++ I    +        I      L K    V +DD   +  G +F 
Sbjct: 292 LVLPPKLAPIQVVIVPIYKGAEQLEKVRSHIQPLIEELKKHNISVKFDDRDTQSPGFKFH 351

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             +L G P+++ VG + +  +  E+  R T  +E ++ ++++ +      N
Sbjct: 352 EYELKGIPVRLAVGQRDIEHNTFEVARRDTLTKETVAGDQIVAHIQQLLEN 402


>gi|50302871|ref|XP_451373.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640504|emb|CAH02961.1| KLLA0A08448p [Kluyveromyces lactis]
          Length = 672

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/428 (16%), Positives = 127/428 (29%), Gaps = 73/428 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +     +     G      P   S+  L  E    + +  E+  
Sbjct: 199 SGCYILRPASYAIWEQIQRWFDDRIKGLGVQNAYFPMFVSSRVLEKEKDHIEGFAPEVAW 258

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        D+ +   PT E VM   +   I+SYR+LP    Q     R           
Sbjct: 259 VTRAGTSELDEPIAIRPTSETVMYPYYAKWIQSYRDLPIKLNQWNSVVR----------- 307

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF                                   K       +        H   
Sbjct: 308 -WEF-----------------------------------KHPQPFLRTREFLWQEGHTAH 331

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +  +  E +V    DF                      +     +  T + +  +     
Sbjct: 332 LTKEAAEEEVMQILDFYAGVYEELLAVPVVKGRKTEKEKFAGGDFTTTCEGYIPQ----- 386

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIG-AMRVVAAVI 329
                 + RGI+     + G  +S   + + +   G +H  +       G + RV+  ++
Sbjct: 387 ------TGRGIQGATSHHLGQNFSKMFNISVENPLGSEHPKIFAYQNSWGLSTRVIGVMV 440

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIK---AHDQVCRDA----CEKIYARLSKVGCDVFWD 382
               D KG++ P  V+ F+  ++ +          R         I +RL K G   F D
Sbjct: 441 MIHSDNKGLVIPPRVSQFQSVVLPVGITTKTSDEQRAKIHENARAIESRLKKAGIRAFGD 500

Query: 383 -DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +     G +F+  +L G PL++ +G K +   +V    R  G +  +SL ++       
Sbjct: 501 YNDNYTPGWKFSQYELKGIPLRIELGPKDLEKEQVTCVRRNDGKKIVVSLNDLEKRIPEI 560

Query: 442 FSNNRPVL 449
               +  L
Sbjct: 561 LEELQQDL 568


>gi|255940600|ref|XP_002561069.1| Pc16g07440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585692|emb|CAP93414.1| Pc16g07440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 630

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 89/267 (33%), Positives = 138/267 (51%), Gaps = 7/267 (2%)

Query: 2   RRSKYFLPI--LQENPRDAEIASH-KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           R S  ++P   + + P D E      L++R G + Q   G++  LPLG +  D +  +I 
Sbjct: 35  RVSNIWIPTGGISKKPVDGEKEDANDLLVRAGFLRQAYSGVFHLLPLGLRVQDKLEHLID 94

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
           +  +  GA ++S+ ++ S +LW +SGR    G E+ R  DR     +  PTHEE +T + 
Sbjct: 95  KHMSSLGASKVSLSSISSQELWKQSGRLTD-GSELFRFNDRKGTPFLLAPTHEEEITTLV 153

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
                SY++LP   YQI  K+RDE RPR G++R REF+MKD Y+FD + + +  +Y+ + 
Sbjct: 154 GHLTTSYKSLPLRVYQISRKYRDEARPRQGLLRGREFIMKDLYTFDYSVDEALKTYDAVK 213

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +Y  +F+ L +  +   A+SG +GG LSHE+  ++  GE +V       D     E   
Sbjct: 214 SAYTELFNELKIPYLVAAADSGNMGGSLSHEYHFISPKGEDEVVSCSHC-DHVYNEELA- 271

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNE 265
            D         EQ TAP   T D   E
Sbjct: 272 -DGKTHSFEESEQNTAPGFQTDDAPVE 297



 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 23/202 (11%)

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK----------------GA 305
           VH+             S   +E+GH F+ GT+YS  ++A+                   A
Sbjct: 432 VHDGDRCSQCAHGSLTSHSAVELGHTFHLGTRYSKVLNASVSVNSALLEGSSELDAKSSA 491

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
             +   +QMG +GIG  R+++AV     D KG+ WP ++AP++     +    +      
Sbjct: 492 KEQIVPMQMGCHGIGVSRMISAVANRLADSKGLNWPRAMAPYE----VVVVSGKGLETVA 547

Query: 366 EKIYARLS---KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +++Y  L+       DV  DD  + +G +   ADL+G+P+ V+VG+ +     +E++ R 
Sbjct: 548 DQVYDSLTGGAAASLDVILDDRDKGMGWKLGDADLIGYPIIVVVGNGWKKKETLEVQCRR 607

Query: 423 TGIREDMSLEEVINYASHRFSN 444
             ++ED+SL+ +  +     + 
Sbjct: 608 LDVKEDVSLDGLRTFVESLLAK 629


>gi|313127085|ref|YP_004037355.1| prolyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
 gi|312293450|gb|ADQ67910.1| prolyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
          Length = 488

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 126/419 (30%), Gaps = 68/419 (16%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKE 92
           +   G     P      + V   +      TG      P       L  E    + +  E
Sbjct: 36  EGMSGFIVTRPRAYALWERVQGFLDARFKDTGVQNAYFPLFIPESYLEREKDIVEGFDPE 95

Query: 93  MLRLA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  +     D  ++ +   PT E ++       ++S+R+LP    Q     R E      
Sbjct: 96  VAWVTQAGHDELEERLAVRPTSESIIAPYMSQWVRSHRDLPLRVNQWASVVRWEATETK- 154

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
                             P      +                     R +          
Sbjct: 155 ------------------PFFRTKEFLWQEGHTAHATAEAAWDETMTRLDQY-------- 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                                    S   D   I  L     +      A +    E L 
Sbjct: 189 ------------------------ESVYEDLLAIPVLRGAKPEHDKFPGANTTTTVEALM 224

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
              P+ K      ++       GT ++     T+   D +       S+G+ + R + A+
Sbjct: 225 ---PDGK-----SVQGATSHDLGTSFAEAFDLTYTDEDEESQVAHTTSWGL-SWRALGAL 275

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGE 386
           I +  D +G++ P +VAP ++ ++ I   D  +   +  E I   L   G  V  DD  E
Sbjct: 276 IMTHSDDQGLVLPHTVAPEQVVIVPIWQADTQEKVLEYAESISEELEDAGIRVELDDRDE 335

Query: 387 Q-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  G +F   +L G P++  +G   V D  V + HR  G  ++++ E++       F  
Sbjct: 336 RNPGFKFNEWELKGVPVRFEIGPNEVDDDVVTVVHRPDGETKEVAREDIAETVREEFDE 394


>gi|150866832|ref|XP_001386559.2| prolyl-tRNA synthetase, cytoplasmic [Scheffersomyces stipitis CBS
           6054]
 gi|149388088|gb|ABN68530.2| prolyl-tRNA synthetase, cytoplasmic [Scheffersomyces stipitis CBS
           6054]
          Length = 572

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 127/242 (52%), Gaps = 4/242 (1%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           + +H+L+++  +I+Q   G+ +W P+G   ++ ++ IIR   +     E+ +  L     
Sbjct: 29  LPTHELLVQLNLINQPRAGLVNWSPIGLTIMNKISDIIRRRMDEISFEEVKLSLLSHHSS 88

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W ++GR+D+   E+ +L     +  I  PT EE + +   ++  SY+NLP  +YQI  KF
Sbjct: 89  WRKTGRWDN-SSELFKLK---GEEYILSPTAEEDIVNYVSNNSSSYKNLPLLYYQINPKF 144

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R+E RPR G++R +EF+MKDAYSFD + + +  +Y  +  +Y +IF  L L      A+S
Sbjct: 145 RNEKRPRGGLLRGKEFMMKDAYSFDASEKDAMTTYQSVIGAYTKIFGDLKLPYTKAEADS 204

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G IGG LSHE+  + DTGE  ++            +   + +     S   +    Y  T
Sbjct: 205 GDIGGSLSHEWHYIDDTGEDIIYTCDGCGSVSNVEKTLSYPEQEVDESQSIEVAVRYFTT 264

Query: 260 SD 261
            D
Sbjct: 265 VD 266



 Score = 73.6 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 8/150 (5%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF---KGADGK--DHYVQMGSYGIG 320
           +L     E    S + IEVGH FY G KYS P+  +        G+     + MG YGIG
Sbjct: 360 ELCGKCEEGHLHSNKAIEVGHTFYLGDKYSKPLDCSMDFPVNEKGQVERRNLIMGCYGIG 419

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R++A++ E + D KG+ WP S+AP+   +  I+       ++ E  Y  L+    D  
Sbjct: 420 VSRIIASIGEINRDDKGLNWPQSIAPWT--MTIIEGAKSESGESYESFYNTLNDNSVDYR 477

Query: 381 WDDM-GEQIGSQFAVADLLGFPLQVIVGSK 409
            D+     +G +   ++LLG PL VI+G +
Sbjct: 478 LDNRAKIGLGKKINQSNLLGIPLAVILGKQ 507


>gi|168057512|ref|XP_001780758.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667776|gb|EDQ54397.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 536

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/417 (14%), Positives = 135/417 (32%), Gaps = 68/417 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + + + +      TG   M  P L     +  E+   + +  E+  +      
Sbjct: 93  PYGYAIWEFIQSWLDARFKETGHSNMYFPQLIPYSFIEKEASHVEGFSPELALVT----- 147

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
                                                          +   + L +    
Sbjct: 148 -----------------------------------------------IGGGKELEERLVV 160

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +     H + +   SY  +   +   +   R E        + EF+     G T   
Sbjct: 161 RPTSETIVNHMFAQWVQSYRDLPLLINQWANVHRWEMRTRPFVRTLEFL--WQEGHTAHT 218

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             ++  +  +      + +     + +       +         +  ++ E      R +
Sbjct: 219 SPEEAEEEALR-MIEVYREFAYSQAAIPVVVGRKSRLETFAGASITYTI-EAMMGDRRAL 276

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           + G     G  ++   +  +    G   YV   S+G+ + R+V  +I +  D  G+++P 
Sbjct: 277 QAGTSHNLGQNFAKAFNTQYTDEKGDLQYVWQTSWGM-STRMVGGIIMTHGDDTGLLFPP 335

Query: 343 SVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLL 398
            VAP ++ ++ I   D+       A EK    L   G  V  D   ++  G +F   ++ 
Sbjct: 336 RVAPLQVVIVPIWKKDEQKADVMAAAEKTEKILKGAGLRVKLDVSDQKTAGFKFNFWEMK 395

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLEE--VINYASHRFSNNRPVL 449
           G P+++ +G + V+++ + +  R      G +  +S+EE  ++ +  +R    +  L
Sbjct: 396 GVPIRIEIGPRDVAENVLVVARRDVPGKDGKQFGVSMEEKPLVEFVKNRLEEIQESL 452


>gi|154295615|ref|XP_001548242.1| hypothetical protein BC1G_13078 [Botryotinia fuckeliana B05.10]
 gi|150843958|gb|EDN19151.1| hypothetical protein BC1G_13078 [Botryotinia fuckeliana B05.10]
          Length = 442

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/411 (15%), Positives = 135/411 (32%), Gaps = 69/411 (16%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR--------- 99
               +   +  + +  G  E+  PT+    LW +SG +++Y ++M  +  R         
Sbjct: 1   MFKALTEFLSAQYSHFGFEEVITPTIYKKSLWEKSGHWENYAEDMYSVVGRGASGETIGG 60

Query: 100 ---NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREF 155
               ++     P +      IF S  +SYR +P  +       R+E+     G+ R R F
Sbjct: 61  QKGENEEYGLKPMNCPGHCLIFASKQRSYREMPVRYTDFSPLHRNEISGALSGLTRVRRF 120

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              D + F    +  K   +        ++  LGL    +   + P              
Sbjct: 121 HQDDGHIFCRPSQIGKE-ISGTLEFVRMVYTTLGLGPYRLALSTRPSDH----------- 168

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                   +K+  D    +     D      ++ E   A Y    DV    L DS  +  
Sbjct: 169 -----YIGTKEEWDNAETALKQSLDKSGQPWTMNEGDGAFYGPKIDVI---LKDSDGKEH 220

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSA---------------TFKGADGKDHYVQMGSYGIG 320
           + +   ++    F    ++ L   A                     G    V +    +G
Sbjct: 221 QTATIQLD----FQLPKRFELEYQAPAPEIEAKGETTDDPILLAKQGPVAPVLIHRAILG 276

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL-------- 372
           ++  + A++    +     WP  + P K+ ++ +    +       ++  +L        
Sbjct: 277 SVERMMALLI---EHYNGHWPFWLNPSKVIILTVND-SEEVVSYANRVKMQLGQGAYHDS 332

Query: 373 ---SKVGCDV--FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              S+   +V    DD    +  + + A    F   +++G+K V ++ V +
Sbjct: 333 WPKSRHSIEVPIELDDSPRSVKKKISEAKRKRFGAIIVIGNKNVENNTVTV 383


>gi|297792591|ref|XP_002864180.1| hypothetical protein ARALYDRAFT_495320 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310015|gb|EFH40439.1| hypothetical protein ARALYDRAFT_495320 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 542

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/421 (16%), Positives = 134/421 (31%), Gaps = 76/421 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +  +   TG   M  P       +  E+   + +  E+  +     K
Sbjct: 99  PYGYAIWEAIQEYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTVGGGK 158

Query: 103 AMIY----GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E ++  +F   I SYR+LP    Q     R E+R     +R+ EFL +
Sbjct: 159 ELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMR-TKPFIRTLEFLWQ 217

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +           + +  +                                          
Sbjct: 218 E---GHTAHATPEEAEKEAKQMIEIYTRFAF----------------------------- 245

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                           E+T    I    S +E +                    E     
Sbjct: 246 ----------------EHTAIPVIPGRKSKLETFAG-----------ADITYTIEAMMGD 278

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G     G  +S      F   +G+  +V   S+ + + R +  +I +  D  G+
Sbjct: 279 RKALQAGTSHNLGQNFSRAFGTQFADENGERQHVWQTSWAV-STRFIGGIIMTHGDDTGL 337

Query: 339 IWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
           + P  +AP ++ ++ I   D        A   +   L   G  V  DD  ++  G +F  
Sbjct: 338 MLPPKIAPIQVVIVPIWKKDTEKSGVLCAASSVKEALQTAGVRVKLDDTDQRTPGWKFNF 397

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLE--EVINYASHRFSNNRPV 448
            ++ G PL++ +G + VS + V +  R      G    +S+E   ++ Y   +    +  
Sbjct: 398 WEMKGIPLRIEIGPRDVSSNSVVVSRRDIPGKAGKVFGISMEPSTLVAYVKEKLDEIQSS 457

Query: 449 L 449
           L
Sbjct: 458 L 458


>gi|145529361|ref|XP_001450469.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418080|emb|CAK83072.1| unnamed protein product [Paramecium tetraurelia]
          Length = 769

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 99/308 (32%), Gaps = 28/308 (9%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++ I +E   RD      K  L   + HQ S G   + P G    + +   +R +    G
Sbjct: 157 YVKIQKELALRDHRNVGKKQNLY--LFHQLSPGSAFFYPSGAHIYNTLMNFLRRQYYIRG 214

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +A LW  SG YD Y + +  +    +      P +      +F     SY
Sbjct: 215 YQEVISPNIFNAQLWKISGHYDKYKENLFFINMGEEGEYGLKPMNCPGHCLMFDMIQHSY 274

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F    +  R+E+     G+ R R F   DA+ F    +  +            I
Sbjct: 275 RDLPVRFADFGVLHRNEVHGALSGLTRVRRFQQDDAHIFCRMDQIQEE-IKSCLDFLSYI 333

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           +   G                   EF +   T   +   +K+  D               
Sbjct: 334 YSLFG------------------FEFKLYLSTRPEKFLGTKEVWDNAEYQLEQGLKKFGK 375

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATF 302
              +     A Y    DV   KL+D+     +     ++      F    + S  +    
Sbjct: 376 PFEVNPGDGAFYGPKIDV---KLYDAYKREHQCGTIQLDFNLPERFNLQYRASEDVQEVQ 432

Query: 303 KGADGKDH 310
           +  +   +
Sbjct: 433 QDKEQLHN 440



 Score = 59.4 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 1/140 (0%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           IE G            +    K   G  H     +  +   R +   +E           
Sbjct: 521 IESGSSQGLSQHELHKVLHEKKYELGYHHLKAGFARPVIVHRAILGSLERMIAVLTEQCG 580

Query: 342 -DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
                      + +       +D  EKI ARL   G  V  D+  + +  +   A +  F
Sbjct: 581 GKWPFWLSPKQLVLCPVSAYYKDVAEKIAARLRLEGYTVTTDEADQTLAKKVRNAQIQYF 640

Query: 401 PLQVIVGSKFVSDSKVEIKH 420
               ++G + V    ++++ 
Sbjct: 641 NFVGVIGEEEVKAGVIDVRD 660


>gi|302499120|ref|XP_003011556.1| hypothetical protein ARB_02109 [Arthroderma benhamiae CBS 112371]
 gi|291175108|gb|EFE30916.1| hypothetical protein ARB_02109 [Arthroderma benhamiae CBS 112371]
          Length = 533

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 132/412 (32%), Gaps = 52/412 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   + P G   L+ +   +R +  + G  E+  P +    LW  SG + +Y  +M  +
Sbjct: 85  PGSPLFRPNGTHILNKLITFLRAQYKQYGFREVLTPNIYKQSLWEVSGHWQNYKDDMYEV 144

Query: 97  ADRNDKA----------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
             R D                P +      +F+S   SYR LP  +       R+E+   
Sbjct: 145 GGRGDTGEASETSENEIYGLKPMNCPGHCLLFKSQKHSYRELPVRYADFSPLHRNEVSGS 204

Query: 147 -FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+ R R F   D + F    +               +    GL               
Sbjct: 205 LSGLTRVRRFHQDDGHIFCRPGQIGSE-IQLALKFADTVLQTFGLAEGYR---------- 253

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                +VL+   E     S +  +          D+      + E   A Y    D+   
Sbjct: 254 -----LVLSTRPEKDFIGSLEQWENAEQQLRQALDNSGLSWELNEGDGAFYGPKIDL--- 305

Query: 266 KLFDSLPENKRVSARGIEVGHI--FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           ++ DS  +  ++S   +++     F                  G+   V +     G++ 
Sbjct: 306 QIQDSQGKYHQLSTIQLDMNLPQRFELEYLVPEGSEEYDPATGGRATPVLIHRAIFGSLE 365

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIY-------ARLSKV 375
              A++    +     WP  ++P +  L+ I    +Q   DA  KI        +R S  
Sbjct: 366 RFFALLI---ERYNGQWPFWLSPRQAILLTIGKGIEQAAEDAVAKISGFEPITSSRPSST 422

Query: 376 G---------CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           G          +V  D     +  +   A    + L  I+G K V+D  V+I
Sbjct: 423 GLPLSPLQPTFNVDLDLASRSLPKKIHDAHAARYNLVFIMGPKNVADGSVDI 474


>gi|326512486|dbj|BAJ99598.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 554

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/436 (15%), Positives = 121/436 (27%), Gaps = 74/436 (16%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGR 85
           +  MI  +   G Y   P      +++   +  E  ++G      P L S      E   
Sbjct: 75  KAEMIEYYDISGCYVLRPWAYSIWESIQGFLDGEFKKSGVSNAYFPLLVSKRQLELEKAH 134

Query: 86  YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +    D  +       PT E +M   +   I+S+R++P    Q     R 
Sbjct: 135 VEGFAPEVAWVTRSGDSELAEPVAIRPTSETIMYPCYAKWIRSHRDMPLRLNQWCNVIRW 194

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E                                                K       +  
Sbjct: 195 E-----------------------------------------------FKHPVPFLRTRE 207

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                 H         E +V    +                   +   +     Y  T +
Sbjct: 208 FLWQEGHSAFATRPEAEAEVLEILEIYKRAYEELLAIPVTKGKKSEGEKFAGGFYTTTCE 267

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                           + RGI+       G  +S      F+G DG        S+G   
Sbjct: 268 AFIPA-----------TGRGIQACTSHCLGQNFSKMFGIEFEGVDGTKQLAWQNSWGF-T 315

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINI------KAHDQVCRDACEKIYARLSKV 375
            R +  +I    D KG++ P  VAP ++ ++ I           + + A   I   L K 
Sbjct: 316 TRSIGVLIMVHGDNKGLVLPPRVAPTQVVVVPIPYSKGSGDDGALAKRAQTDIVDVLRKA 375

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEE 433
                 D       G ++   +  G P+ +  G K   +   V ++ R TG +E ++L  
Sbjct: 376 NVRTQLDARANYTPGWKYNHWEAKGVPVTIQFGPKDNDNAQCVAVR-RDTGAKETIALAA 434

Query: 434 VINYASHRFSNNRPVL 449
           +           +  L
Sbjct: 435 LATRLPALLQEIQDAL 450


>gi|190345647|gb|EDK37570.2| hypothetical protein PGUG_01668 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 526

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 83/230 (36%), Positives = 130/230 (56%), Gaps = 17/230 (7%)

Query: 10  ILQENPR----DAEIAS--------HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAII 57
           +L++ PR    +AEI S        H+L  + G I+   +G+  W+P G   +  +  II
Sbjct: 1   MLRQLPRIYSTNAEILSKDFRKVPTHQLYTKLGFINHPKQGLVHWMPPGWNMVRKLQTII 60

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                  GA E+++  L SA+LW ++GR+++   E+ +L D          T EE +T +
Sbjct: 61  HRHMVGAGAEEVNLSLLSSAELWNKTGRWEN--NELFKLND---GETCLAATCEEEITQL 115

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            ++ I SY++LP  +YQI+ K+RDE RPR G++R REFLMKDAYSFD+  + +  +YN +
Sbjct: 116 VKNQIASYKSLPLLYYQIKEKYRDEKRPRGGLLRGREFLMKDAYSFDIDEKSAMETYNTV 175

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             +Y  +F  L +  +   A++G IGG LSHE++ L   GE  VF  K  
Sbjct: 176 VNAYHGVFKELKVPYVKAEADTGDIGGSLSHEWLYLHPQGEDTVFVCKSC 225



 Score = 84.0 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 17/180 (9%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK----GADGKDHYVQMGSYGIGA 321
           ++  S  + +   +R IEV H FY G KY+ P+  T +        ++  + MG YGIG 
Sbjct: 350 EICGSCEDGELECSRAIEVAHTFYLGDKYTDPLECTVQVPGPNGVTEERNLMMGCYGIGL 409

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++ A+ E   D  G  WP +++P+  ++I          +  E +   L  +  D+  
Sbjct: 410 SRIIGAIGEICKDENGFRWPAAISPWTATVITSG-------ELGEDLKQTLESMNIDMCV 462

Query: 382 DDMGE-QIGSQFAVADLLGFPLQVIVGSKF--VSDSKVEIKHRLTGIREDMSLEEVINYA 438
           D   +  IG +   +  +G P+ +IVG+K+  +    V ++         + ++E+  Y 
Sbjct: 463 DSRSKVGIGKKVRQSQAMGIPISIIVGNKYPQIE---VNVRGVGKDEVRMVGVDELGEYV 519


>gi|295839715|ref|ZP_06826648.1| threonine-tRNA ligase [Streptomyces sp. SPB74]
 gi|295827624|gb|EDY46892.2| threonine-tRNA ligase [Streptomyces sp. SPB74]
          Length = 425

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/428 (15%), Positives = 119/428 (27%), Gaps = 45/428 (10%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D       L L  G       G+   LP G      +   +R  +   G   +  P L  
Sbjct: 29  DHHRLGRALGLY-GTDPLLGAGLPYLLPDGASVRHALEEYVRALEVAGGYQHVHSPVLGK 87

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            +L+V SG +  Y  + L   +   +  +  P        I+R+  +SYR+LP    ++ 
Sbjct: 88  QELYVRSGHWAHYRADTLPPMEVGGEHFVLRPGLCPHHALIYRARARSYRDLPLRVAELG 147

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E     G +     +  +       PE                +  LGL     R
Sbjct: 148 GMFRAEPSGTLGGLTRVRAIHLNDAHLFCAPESLAAEVAGALALIRTAYRALGLAPSRYR 207

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                               GE   +  ++   +    +                   A 
Sbjct: 208 LSL----------------PGEGAKYALAEGGWERAAAALAEALAASGLDWEEERGEAAF 251

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y    DV   +  D+      +S    +      FG  Y             +   V + 
Sbjct: 252 YGPKIDV---QARDAAGREFTLSTVQADFHQPAAFGLDYR-------AADGSRPRPVMVH 301

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
              +G++  V A +   H G    W   V    + +       +   +A E    R    
Sbjct: 302 RSVLGSLERVLARLIEVHGGAFPAWLAPVQVGVVPVG------EEQEEAAESFVRRCRAA 355

Query: 376 GCDVFWDDM-----GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           G                + ++   A L   P   ++G++  +  +V ++ R         
Sbjct: 356 GLRA----RRYPAHAGTLAARVRRARL--VPHLAVLGAREAAAGEVALRRRDGERLPARP 409

Query: 431 LEEVINYA 438
             E +   
Sbjct: 410 EAEAVALL 417


>gi|47458979|ref|YP_015841.1| prolyl-tRNA synthetase [Mycoplasma mobile 163K]
 gi|81828486|sp|Q6KIE6|SYP_MYCMO RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|47458307|gb|AAT27630.1| prolyl-tRNA synthetase [Mycoplasma mobile 163K]
          Length = 476

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 149/413 (36%), Gaps = 68/413 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   ++P      +NV +   +         + +PTL    L   E      +  E++ +
Sbjct: 37  GNIVFMPNSYGIWENVQSNFNKIIKELNVKNLYLPTLIPESLINSEKDHVQGFAPELITV 96

Query: 97  ADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               DK     +   PT E +  + F++ + SY +LP    Q    FR E +     +R+
Sbjct: 97  EKVGDKVLNEKLFLRPTSEVLFAEYFKTQLNSYNDLPLLLNQWANVFRWE-KTTSPFLRN 155

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   + E +     KM   Y                       +   EF+ 
Sbjct: 156 SEFLWQEGHTSHYSEEEAHQFSKKMIQIY----------------------ANFFEEFLA 193

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        II   +  E++   +   +            
Sbjct: 194 --------------------------IPVIIGQKTESEKFAGAHTTYT-----------I 216

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      R ++ G   Y G  ++     +FK  D    +V   S+GI + R++ A+I   
Sbjct: 217 EAMMKDGRALQSGTSHYLGQNFAKAFDISFKDKDNSKSFVYQTSWGI-STRLIGAIIMVH 275

Query: 333 HDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            D +GII P  +A  ++ +I +    +         ++  L      V  +D  + +G +
Sbjct: 276 GDNRGIIMPPKIATNQVDIITVFANKNPEVLQKANDLFKTLK-NDFRVRINDSNKSVGFK 334

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            A +++ G P+++ +G + +  +KV +  R T  + D+ ++E+ +    +   
Sbjct: 335 AAQSEIEGTPIRIEIGPEDLKQNKVILIRRDTQEKIDVKIDELKSEIFSQIEK 387


>gi|218199143|gb|EEC81570.1| hypothetical protein OsI_25016 [Oryza sativa Indica Group]
          Length = 448

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 68/421 (16%), Positives = 132/421 (31%), Gaps = 76/421 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +  +   TG   M  P       +  E+   + +  E+  +     K
Sbjct: 5   PYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGK 64

Query: 103 AMIY----GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E ++  +F   I+SYR+LP    Q     R E+R     +R+ EFL +
Sbjct: 65  ELEEKLVVRPTSETIVNHMFTKWIQSYRDLPLMINQWANVTRWEMR-TKPFIRTLEFLWQ 123

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +           + +  +                                          
Sbjct: 124 E---GHTAHATLEEAEKEAMQMIDVYTKFAY----------------------------- 151

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                           E      I    S VE +                    E     
Sbjct: 152 ----------------EQAAIPVIPGRKSRVETFAG-----------ANRTYTIEAMMGD 184

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G     G  +S      F   + +  +V   S+ I + R V  +I +  D  G+
Sbjct: 185 RKALQAGTSHNLGQNFSRAFGTQFMDENSQIEHVWQTSWAI-STRFVGGIIMTHGDDAGL 243

Query: 339 IWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
           + P ++AP ++ ++ I           +A   +   L + G  V  DD   +  G +F  
Sbjct: 244 MLPPNIAPIQVVIVPIWKKGDEKSAVMEAVSSVQNTLKEAGIRVKVDDSELRTPGWKFNF 303

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIRE-----DMSLEEVINYASHRFSNNRPV 448
            ++ G P+++ +G + V++  V I  R   G +       M    ++++   R    +  
Sbjct: 304 YEMKGVPIRLEIGPRDVTNKSVVISRRDIPGKQGKEFGVSMDPSILVDHIKGRLVEIQAS 363

Query: 449 L 449
           L
Sbjct: 364 L 364


>gi|226494879|ref|NP_001149927.1| prolyl-tRNA synthetase [Zea mays]
 gi|195635525|gb|ACG37231.1| prolyl-tRNA synthetase [Zea mays]
          Length = 537

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/421 (15%), Positives = 132/421 (31%), Gaps = 76/421 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +  +   TG   M  P       +  E+   + +  E+  +     K
Sbjct: 94  PYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGK 153

Query: 103 AMIY----GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E ++  +F   I+SYR+LP    Q               MR++ F+  
Sbjct: 154 ELEEXLVVRPTSETIVNHMFTKWIQSYRDLPLMINQWANV-------TRWEMRTKPFIR- 205

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                                                   +        H      +  E
Sbjct: 206 ----------------------------------------TLEFLWQEGHTAHATLEEAE 225

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            +       +      E+     I    S VE +                    E     
Sbjct: 226 KEAM-QMIDVYTKFAFEHAAIPVIPGRKSRVETFAG-----------ANRTYTIEAMMGD 273

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G     G  +S      F   +G+  +V   S+ I + R V  +I +  D  G+
Sbjct: 274 KKALQAGTSHNLGQNFSRAFGTQFMDENGQIEHVWQTSWAI-STRFVGGIIMTHGDDAGL 332

Query: 339 IWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
           + P  +AP ++ ++ I           +A + +   L + G  V  DD   +  G +F  
Sbjct: 333 MLPPRIAPIQVIIVPIWKKGDEKAVVVEAVDSVQKILKEAGIRVKVDDSELRTPGWKFNH 392

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIRE-----DMSLEEVINYASHRFSNNRPV 448
            ++ G P+++ +G + V++  V +  R   G +       M    ++N+   R  + +  
Sbjct: 393 YEMKGVPVRIEIGPRDVTNKSVVVSRRDVPGKQGKEFGVSMEPSILVNHIKGRLDDIQAS 452

Query: 449 L 449
           L
Sbjct: 453 L 453


>gi|157867949|ref|XP_001682528.1| bifunctional aminoacyl-trna synthetase; prolyl-trna synthetase
           [Leishmania major strain Friedlin]
 gi|68125982|emb|CAJ04056.1| putative prolyl-tRNA synthetase [Leishmania major strain Friedlin]
          Length = 731

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/420 (15%), Positives = 126/420 (30%), Gaps = 73/420 (17%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           +  MI  +   G Y   P        V   +  +  + G  +   P   S   L  E   
Sbjct: 242 KAEMIEYYDVSGCYIIRPWAYYVWKCVQRFLGGKIEKLGVEDCYFPMFVSRSCLEREKDH 301

Query: 86  YDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +    D  +       PT E VM   +   I+S+R+LP          R 
Sbjct: 302 IEGFAPEVAWVTRAGDTELEQPVAVRPTSETVMYPYYAKWIRSHRDLPVRLNMWNNVIRW 361

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E       +R+REFL ++ +                                        
Sbjct: 362 EFSHPTPFIRTREFLWQEGHCA-------------------------------------- 383

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                       A+    +V    +                       +     Y  T +
Sbjct: 384 ---------WAKAEECAKEVLEILECYASVYEQLLAVPVVRGRKTEKEKFAGGDYTTTVE 434

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG- 320
              E +            RG +       G  +       F+  +  +  +       G 
Sbjct: 435 TFIEAVG-----------RGCQGATSHNLGQNFGKMFDIRFQDPENNEQTLIPWQNSWGL 483

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLS 373
           + RV+  +I    D +G++ P  VA  ++ +I +        +A       C ++ + L 
Sbjct: 484 STRVIGVMIMVHGDNRGMVMPPRVASTQVIIIPVGITKDTTEEARQELLASCWRLESELC 543

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           + G     D       G +F   ++ G PL+V +G + +++  + +  R +G R  ++ +
Sbjct: 544 EGGVRARCDLRDNYSPGWRFNHWEVKGVPLRVELGPRELAERSLAVAVRHSGARHSVAWD 603


>gi|157867947|ref|XP_001682527.1| bifunctional aminoacyl-trna synthetase; prolyl-trna synthetase
           [Leishmania major strain Friedlin]
 gi|68125981|emb|CAJ04054.1| putative prolyl-tRNA synthetase [Leishmania major strain Friedlin]
          Length = 731

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/420 (15%), Positives = 126/420 (30%), Gaps = 73/420 (17%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           +  MI  +   G Y   P        V   +  +  + G  +   P   S   L  E   
Sbjct: 242 KAEMIEYYDVSGCYIIRPWAYYVWKCVQRFLGGKIEKLGVEDCYFPMFVSRSCLEREKDH 301

Query: 86  YDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +    D  +       PT E VM   +   I+S+R+LP          R 
Sbjct: 302 IEGFAPEVAWVTRAGDTELEQPVAVRPTSETVMYPYYAKWIRSHRDLPVRLNMWNNVIRW 361

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E       +R+REFL ++ +                                        
Sbjct: 362 EFSHPTPFIRTREFLWQEGHCA-------------------------------------- 383

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                       A+    +V    +                       +     Y  T +
Sbjct: 384 ---------WAKAEECAKEVLEILECYASVYEQLLAVPVVRGRKTEKEKFAGGDYTTTVE 434

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG- 320
              E +            RG +       G  +       F+  +  +  +       G 
Sbjct: 435 TFIEAVG-----------RGCQGATSHNLGQNFGKMFDIRFQDPENNEQTLIPWQNSWGL 483

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLS 373
           + RV+  +I    D +G++ P  VA  ++ +I +        +A       C ++ + L 
Sbjct: 484 STRVIGVMIMVHGDNRGMVMPPRVASTQVIIIPVGITKDTTEEARQELLASCWRLESELC 543

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           + G     D       G +F   ++ G PL+V +G + +++  + +  R +G R  ++ +
Sbjct: 544 EGGVRARCDLRDNYSPGWRFNHWEVKGVPLRVELGPRELAERSLAVAVRHSGARHSVAWD 603


>gi|296241821|ref|YP_003649308.1| prolyl-tRNA synthetase [Thermosphaera aggregans DSM 11486]
 gi|296094405|gb|ADG90356.1| prolyl-tRNA synthetase [Thermosphaera aggregans DSM 11486]
          Length = 483

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 144/448 (32%), Gaps = 79/448 (17%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +++  +L+E      I           I    KG+  W+P G KAL     I+ +    T
Sbjct: 20  EWYHKVLKEAK----IVD---------IRYPVKGMNVWMPYGLKALRLTQRILIQLLEET 66

Query: 65  GAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
           G  E   PT+    ++  E      +G E                  E   T  F   + 
Sbjct: 67  GHEEAYFPTMIPESVFSKEKDFLQGFGGE--------------TFVVEGTATKRFDERLF 112

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
                    Y +   +                               K         Y  
Sbjct: 113 VRPTSETVMYYMWNMW----------------------IKGRKDLPVKMYQIVNVFRYET 150

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                 L+          +G   +H      +  E Q+          +      FD + 
Sbjct: 151 KMTHPILRVR------EIMGFIEAHTAHASMEEAEAQIR-------EALGIYKKFFDTLQ 197

Query: 244 SLNSIVEQ--WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
               IV+   W     A    +N      +P+ K     G+E+G +   G ++S      
Sbjct: 198 LPYFIVKTPPWDTFAGAE---YNYDFITVMPDGK-----GLELGSVINLGQRFSRAFDIK 249

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQV 360
           F   DG + YV    YG+ + R + AVI    D KG+ +P  +AP ++ ++ I    +Q 
Sbjct: 250 FMDTDGVEKYVYQTCYGV-SERTLGAVIGIHGDDKGLFFPPEIAPIQVVVVPIMKGVEQD 308

Query: 361 CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             D    +   L  +G  V  D D+    G ++   ++LG P ++ +G +  S + V I 
Sbjct: 309 VLDYSRNVEKHLKNLGVRVTVDMDLEHTPGWKYYYWEMLGVPTRIEIGKREASTNTVTIA 368

Query: 420 HRLTGIREDMSLEEVINYAS---HRFSN 444
            R    +  + + E+ +         ++
Sbjct: 369 RRDGKPKVQVKISEIYDALKTAWEEVNS 396


>gi|146420078|ref|XP_001485997.1| hypothetical protein PGUG_01668 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 526

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 83/230 (36%), Positives = 130/230 (56%), Gaps = 17/230 (7%)

Query: 10  ILQENPR----DAEIAS--------HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAII 57
           +L++ PR    +AEI S        H+L  + G I+   +G+  W+P G   +  +  II
Sbjct: 1   MLRQLPRIYLTNAEILSKDFRKVPTHQLYTKLGFINHPKQGLVHWMPPGWNMVRKLQTII 60

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                  GA E+++  L SA+LW ++GR+++   E+ +L D          T EE +T +
Sbjct: 61  HRHMVGAGAEEVNLSLLSSAELWNKTGRWEN--NELFKLND---GETCLAATCEEEITQL 115

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            ++ I SY++LP  +YQI+ K+RDE RPR G++R REFLMKDAYSFD+  + +  +YN +
Sbjct: 116 VKNQIASYKSLPLLYYQIKEKYRDEKRPRGGLLRGREFLMKDAYSFDIDEKLAMETYNTV 175

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             +Y  +F  L +  +   A++G IGG LSHE++ L   GE  VF  K  
Sbjct: 176 VNAYHGVFKELKVPYVKAEADTGDIGGSLSHEWLYLHPQGEDTVFVCKSC 225



 Score = 83.6 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 17/180 (9%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK----GADGKDHYVQMGSYGIGA 321
           ++  S  + +    R IEV H FY G KY+ P+  T +        ++  + MG YGIG 
Sbjct: 350 EICGSCEDGELECLRAIEVAHTFYLGDKYTDPLECTVQVPGPNGVTEERNLMMGCYGIGL 409

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++ A+ E   D  G  WP +++P+  ++I          +  E +   L  +  D+  
Sbjct: 410 SRIIGAIGEICKDENGFRWPAAISPWTATVITSG-------ELGEDLKQTLESMNIDMCV 462

Query: 382 DDMGE-QIGSQFAVADLLGFPLQVIVGSKF--VSDSKVEIKHRLTGIREDMSLEEVINYA 438
           D   +  IG +   +  +G P+ +IVG+K+  +    V ++         + ++E+  Y 
Sbjct: 463 DSRSKVGIGKKVRQSQAMGIPISIIVGNKYPQIE---VNVRGVGKDEVRMVGVDELGEYV 519


>gi|312385395|gb|EFR29915.1| hypothetical protein AND_00854 [Anopheles darlingi]
          Length = 1070

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/422 (15%), Positives = 124/422 (29%), Gaps = 73/422 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
            G Y            +      E  R G  E   P   S A L  E      +  E+  
Sbjct: 598 SGCYILRHWSFAIWKAIRNWFDAEITRLGVKECYFPIFVSRAALEREKTHIADFAPEVAW 657

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D  +       PT E VM   +   I+SYR+LP    Q     R E +     +R
Sbjct: 658 VTKSGDSELAEPIAVRPTSETVMYPAYAKWIQSYRDLPIRLNQWNNVVRWEFKHPQPFLR 717

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++   T   +      +                                  
Sbjct: 718 TREFLWQEGHTAFATKAEADEEVLTILD-------------------------------- 745

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                       +       +    T+ +               Y  T + +        
Sbjct: 746 ------LYAKVYTDLLAIPVVKGRKTEKEKFA---------GGDYTTTVEAYISA----- 785

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 S R I+     + G  +S      ++  + K+      +      R +  +I  
Sbjct: 786 ------SGRAIQGATSHHLGQNFSRMFDIVYEHPETKEKEYVYQNSWGITTRTIGVMIMV 839

Query: 332 SHDGKGIIWPDSVAPFKISLINIK----AHDQVCR---DACEKIYARLSKVGCDVFWDDM 384
             D +G++ P  VA  ++ ++         D+  R   ++C ++   L   G     D  
Sbjct: 840 HADNQGLVLPPRVACIQVVIVPCGITATTTDEERRRLYESCRELERSLVGAGIRCEGDYR 899

Query: 385 GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRF 442
                G ++   +L G P+++ +G K +   + V ++ R  G +  +  E+         
Sbjct: 900 DNYSPGWKYNHWELKGVPVRIELGFKDLQKGECVAVR-RDNGTKLTVRREQATVELPKLL 958

Query: 443 SN 444
             
Sbjct: 959 ET 960


>gi|119357673|ref|YP_912317.1| prolyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
 gi|152016595|sp|A1BHL6|SYP_CHLPD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|119355022|gb|ABL65893.1| prolyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
          Length = 481

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/423 (16%), Positives = 137/423 (32%), Gaps = 75/423 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG +    P       +  E+   + +  E   +
Sbjct: 33  GCMVIRPNGYAIWEKMQTALDRMFKETGHVNAYFPLFIPESFIAKEAEHIEGFAPECAVV 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                                    E L
Sbjct: 93  T----------------------------------------------------HGGGEEL 100

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----- 211
            +  Y    +      SY K   SY  +   +   +  +R E        + EF+     
Sbjct: 101 AEKLYVRPTSETIIWSSYKKWIQSYRDLPILINQWANVVRWEMRTRLFLRTTEFLWQEGH 160

Query: 212 -VLADTGETQVFCSKDFMDFPIPSENTD-FDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              A   E+Q    +    +   +EN      II   +  E++              +  
Sbjct: 161 TAHATPEESQEEVVRMINVYKTFAENYMALPVIIGKKTDSEKFAG-----------AVDT 209

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E     ++ ++ G     G  ++      F+  DGK  YV   S+G+ + R++ A+I
Sbjct: 210 WCIEAMMQDSKALQAGTSHNLGQNFAKAFDCQFQTRDGKLDYVWATSWGV-STRLIGALI 268

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR-DACEKIYARLSKVGCDVFWDDMGE-Q 387
            +  D +G++ P  +A  ++ +I I   D+    +    I   LS  G   F DD  +  
Sbjct: 269 MAHSDDRGLVLPPKLATRQVVIIPILKGDKAAVCEKAHAISRTLSANGIPAFVDDSEQNS 328

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY-ASHRFSNNR 446
            G +FA  +L G PL++ +G + + +    +  R T  + +++L++ ++   S   +  +
Sbjct: 329 PGWKFAEYELQGIPLRIELGPRDIQNGTCIVARRDTLEKTELALDDTLSVSISEILNAIQ 388

Query: 447 PVL 449
             L
Sbjct: 389 QNL 391


>gi|167043404|gb|ABZ08106.1| putative tRNA synthetase class II core domain (G, H, P, S and T)
           [uncultured marine microorganism HF4000_APKG1C9]
          Length = 506

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 137/409 (33%), Gaps = 38/409 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W P G KA+  ++ + R +  RTG  E + P L   DL  +  +  S         
Sbjct: 39  GMDVWKPYGWKAMTLIDGLTRSQMRRTGHEEYNFPLLVPEDLLDKENQLVS--------- 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF-L 156
                 +          +++     ++       + +       E+              
Sbjct: 90  -----HLKASRDTGIDASELRVDEEEAGFKKEVYWVKHGGDTELEVPMFLRPTSETPMYT 144

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           M   +         K         Y     R              I     H F      
Sbjct: 145 MFSLWIRSHADLPLKTFQIVNTFRYETKQTRSF------------IRVREIHFFEAHTVH 192

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            +     ++   D  I           ++ S    W     A    H+  +   +P    
Sbjct: 193 ADQDGATAQIAEDAEIVQRLLHELCFPAIVSKRPSWDTFPGAW---HSTAVDAVMPNG-- 247

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              R ++V    ++  +++   + T++  +G+  +    ++G+ + R++ A++    D  
Sbjct: 248 ---RTLQVATYHHYRDQWARAFNLTYEDRNGETQFCHQTTFGM-SERLLGAIVGMHGDDS 303

Query: 337 GIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           G+I P S+AP ++ L+ + AH D+      E +   L   G  V  D    + G++    
Sbjct: 304 GLIMPPSIAPIQVILMPVAAHSDENVIPRVEALALDLQDSGFRVQVDARDLRPGTKHYDW 363

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G P+++ +G + ++ S+  I  R  G  E   LE + +       +
Sbjct: 364 EIKGVPIRLEIGPRDLASSQCTITLRTGGKIES-PLEGISSTIRQYLDS 411


>gi|159489080|ref|XP_001702525.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280547|gb|EDP06304.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 446

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 78/408 (19%), Positives = 134/408 (32%), Gaps = 71/408 (17%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADR----NDKA 103
             + V     +   + G      P   + D L  E    + +  E+  +        +K 
Sbjct: 1   MWEVVQGWFDQRIKKLGVQNSYFPLFITEDVLNTEKDHVEGFAPEVAWVTKYGNSTMEKP 60

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           +   PT E VM   F   I+S+R+LP    Q     R E +     +RSREFL ++    
Sbjct: 61  IAIRPTSETVMYPYFSQWIRSHRDLPLRLNQWTNVVRWEFKYPTPFIRSREFLWQEG--- 117

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                                                       H      +  E +V  
Sbjct: 118 --------------------------------------------HTAFATQEEAEREVLD 133

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
             +                   +   +   A Y  T + +       +PE    + RGI+
Sbjct: 134 ILELYRGVYEDLLAVPVTKGKKSKKEQFAGAFYTTTVEAY-------IPE----TGRGIQ 182

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                  G  +S   + T++  D +  +V   S+G+   R +  +I +  D KG++ P  
Sbjct: 183 GATSHCLGQNFSKMFNITYEDDDRQKQHVWQNSWGL-TTRSLGVMIMTHADDKGLVLPPR 241

Query: 344 VAPFKISLINIKAHD------QVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
           VAP ++ LI I          Q   D  +++   L   G  V  D       G ++   +
Sbjct: 242 VAPKQVVLIPIPKASTAPEAVQAMLDKVDELTKALEDKGVRVVTDTRSNYTPGWKYNHWE 301

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           L G PL+V +G K + ++ V    R TG +E +   +V          
Sbjct: 302 LKGLPLRVELGPKDMDNAAVMTCRRDTGAKEVVPWADVATRIPELLET 349


>gi|297624797|ref|YP_003706231.1| prolyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
 gi|297165977|gb|ADI15688.1| prolyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
          Length = 484

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/407 (15%), Positives = 124/407 (30%), Gaps = 64/407 (15%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDK 102
           P G    +N+   +      TG   +  P L     +  E+   + +  E+  +     K
Sbjct: 43  PYGYAIWENIQRHLDAMFKATGHENLYFPLLIPTSFFEREADHVEGFSPELAVVTHAGGK 102

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
           A+                                                          
Sbjct: 103 ALEEPLA----------------------------------------------------I 110

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +      +Y+K   SY  +          +R E        + EF+     G T   
Sbjct: 111 RPTSETIIGEAYSKWIQSYRDLPLLYNQWCNVLRWELRTRPFLRTTEFL--WQEGHTAHA 168

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            +++ M          + +       +  +             +   ++ E      + +
Sbjct: 169 TAEEAM-AETRQMLEIYAEFAERYGALPVFRGEKTPGERFAGAQNTYTI-EAMMRDGKAL 226

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           + G   Y G  ++   + TF   + +  +V   S+G+ + R + A+I +  D KG+I P 
Sbjct: 227 QAGTSHYMGDNFARAFNITFNDVNNQQAFVHTTSWGL-SWRFIGALIMTHGDDKGLILPP 285

Query: 343 SVAPFKISLINI-----KAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVAD 396
            +AP ++ ++ I      A          K++A L   G  V  DD  G   G +F   +
Sbjct: 286 PLAPHQVVVVPIYRADDDAARAAVLAEVGKLHAALKDAGVRVKVDDRQGMSPGWKFNEWE 345

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             G PL++ +G K +      +  RL+G +  + L  +         
Sbjct: 346 QKGVPLRLELGPKDLEAGAALLADRLSGEKRPVKLANLAQTLPDELE 392


>gi|58700192|ref|ZP_00374690.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533291|gb|EAL57792.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 246

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
             +L  L+E   RD    +  + L    I + + G   W   G    + + + IR++   
Sbjct: 17  NAYLECLKEAEKRDHRKIAKDMDLF--HIQEEAVGQVFWHEQGYILYNVLESYIRKKLIN 74

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L S +LW +SG +D + + M  + +   K +   P +      IF SH +
Sbjct: 75  NGYFEVKTPILVSKELWEKSGHWDKFRENMFIVDESESKKLAIKPMNCPCHVQIFNSHTR 134

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           SYR+LP    +     R+E      G+MR R F   DA+ F +  + +  +         
Sbjct: 135 SYRDLPIRMAEFGTCHRNESSGSLHGLMRVRGFTQDDAHIFCMEEQVNSETIKF-CDLLK 193

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            ++  LG   I ++    P       E    A+    +  
Sbjct: 194 EVYSELGFNEISVKFSDRPDVRAGDDEVWDRAEKALLEAV 233


>gi|326428221|gb|EGD73791.1| bifunctional aminoacyl-tRNA synthetase [Salpingoeca sp. ATCC 50818]
          Length = 1489

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 66/422 (15%), Positives = 124/422 (29%), Gaps = 73/422 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G +  LP      + +         R G      P   + D L  E      +  E+  
Sbjct: 1019 SGCFVLLPWAYFMWEQIQEFFNGHLRRLGVSNCYFPMFVTMDRLQKEKDHIADFAPEVAW 1078

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    D  M       PT E +M   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1079 VTHAGDSPMEKPIAIRPTSETIMYPYYAKKVQSHRDLPIRMNQWSNVVRWEFKQATPFLR 1138

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++                             G  +   +A+             
Sbjct: 1139 TREFLWQE-----------------------------GHTAYANQAD------------- 1156

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              A+  E        + D            I    +  E++         V+   +   +
Sbjct: 1157 AEAEVYEILDLYRAIYEDLLA------IPVIPGRKTEKEKFAGG------VYTTTVEGFI 1204

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIE 330
            P     + RGI+     + G  +S      ++                G   R +  +I 
Sbjct: 1205 P----QTGRGIQGATSHHLGQNFSKMFEIKYQDPQDASKDCFAYQNSWGLTTRTLGVMIM 1260

Query: 331  SSHDGKGI-IWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWD 382
               D K   + P  VA  ++++I                      I   L + G     D
Sbjct: 1261 VHSDNKVGLVLPPRVACIQVAVIPTGLSAKLGDDKRDKLLAEARAIEDELKRAGIRAHAD 1320

Query: 383  -DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             D+      ++   +L G PL++ VG + +  ++V    R TG +  ++ + +       
Sbjct: 1321 LDLHVSPPWKYNHYELKGVPLRIEVGPRDMESNQVVAVVRCTGDKLTLARDTLATAIPAT 1380

Query: 442  FS 443
              
Sbjct: 1381 LK 1382


>gi|289642346|ref|ZP_06474494.1| prolyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
 gi|289507878|gb|EFD28829.1| prolyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
          Length = 467

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/406 (14%), Positives = 123/406 (30%), Gaps = 59/406 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + + A +      TGA+    P       L  E+   + +  E+  +     K
Sbjct: 38  PYGYAIWERMQADVDARIKATGAVNAYFPLFIPESYLRREAQHVEGFSPELAVVTHGGGK 97

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 98  ELEEPVVVRP-------------------------------------------------- 107

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +         K   SY  +   L   +  +R E  P     + EF+     G T   
Sbjct: 108 --TSETVIGEYMAKWTQSYRDLPLLLNQWANVVRWELRPRLFLRTSEFL--WQEGHTAHV 163

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              D   +        + + ++    +        A           +L E      + +
Sbjct: 164 DQADAAAYARRIHLEVYREFMTSVLALPVLVGRKTAKERFAGAINTLTL-EAMMGDGKAL 222

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++      G  ++      F GADG+ H     S+G  + R++  +I +  D  G+  P 
Sbjct: 223 QMATSHELGQNFARAFDIDFLGADGQRHLAWTTSWGS-STRMIGGLIMAHGDDNGLRIPP 281

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFP 401
            +AP ++ ++ ++  D    +   +I   L   G  V  D   G   G +   A+L G P
Sbjct: 282 RLAPVQVIVLPVRD-DAALLERVSQITEGLQAAGVRVQLDARPGLSFGRRVTDAELKGIP 340

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           ++V +G + ++   + +  R T  +  + L++V+        + + 
Sbjct: 341 VRVEIGPRDLAAGSITLARRDTSEKITVPLDDVLARVPALLDDVQQ 386


>gi|298674446|ref|YP_003726196.1| threonyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
 gi|298287434|gb|ADI73400.1| threonyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
          Length = 637

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 143/436 (32%), Gaps = 54/436 (12%)

Query: 24  KLMLRTG---MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-- 78
           +LM R G          G   + P G+     +   + +E  R+GA+E+  P +   +  
Sbjct: 220 ELMKRLGIADYEQGSDSGNLRYYPRGRFIKSLLENYVLDEAIRSGAMEVETPIMYDMNHP 279

Query: 79  -LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            L     R+ +    +     R    +            +      SY+NLP    ++  
Sbjct: 280 TLKKYLDRFPARQYSIESDKRR----LFLRFAACFGQFLMSHDMTISYKNLPLKMVEMTR 335

Query: 138 K-FRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E R    G+ R R F M D ++F    + S   ++  +   +     +G      
Sbjct: 336 YSFRKEQRGELVGMKRLRSFTMPDMHTFCEDMDQSISEFDDQYKMCINTLDNIG------ 389

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                           V  D  E  +  ++DF +       T+    ++   +VE W   
Sbjct: 390 ----------------VDVDDYEVAIRFTRDFYENN-KDFITEMAKTVNKPVLVEMWDTR 432

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           +            D+L +   +S   I+V        + +     ++   +G+     M 
Sbjct: 433 FFYFVLKFEFNFIDALGKASALSTVQIDV--------ENAETYDISYIDRNGESKRPTML 484

Query: 316 SYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARL 372
                    R + A++E +           +  +       I    +   D  EKIY +L
Sbjct: 485 HCSPSGAIERCIYALLEKNAMKIDNGEVPMLPVWLSPTQVRIIPVHEHHFDFAEKIYEQL 544

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-----IRE 427
               C V  DD  + +G +   A     P  V++G + +   K+ +  R           
Sbjct: 545 ---NCRVDIDDREDTVGKKIREAGREWIPYVVVIGDREIESGKLNVTIRSESLPKKPKSS 601

Query: 428 DMSLEEVINYASHRFS 443
           +M++EE+ N       
Sbjct: 602 EMTVEELNNRVLSEIQ 617


>gi|45357977|ref|NP_987534.1| threonyl-tRNA synthetase [Methanococcus maripaludis S2]
 gi|73919806|sp|Q6M057|SYT_METMP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|44920734|emb|CAF29970.1| Threonyl-tRNA synthetase [Methanococcus maripaludis S2]
          Length = 622

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 56/417 (13%), Positives = 126/417 (30%), Gaps = 46/417 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + W P G+   D ++  +       G + +  P +            D +G+   R 
Sbjct: 218 AGHFRWYPKGKLIRDLLSDYVYNLVVERGGMPVETPVMYDLQNNAIREHADKFGERQYRF 277

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSRE 154
                K ++           + +      ++LP   Y++    FR E R    G+ R R 
Sbjct: 278 TQ-GGKDLMLRFAACFGQFMMKKDMYLLPKHLPLRLYELSTYSFRYEQRGELVGLKRLRA 336

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++  +  + +  ++       L+           +   +     D + E+    
Sbjct: 337 FTMPDMHTVCMDMKQAMEAFEDQLWMGLKTGDDFKTPYAIIFRFTQDFF-DENKEWFFAM 395

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                Q +     ++     ++     +                     +  + DS    
Sbjct: 396 AKEYKQKYGKDAILEILSGRKHYWVGKV---------------------DMAVVDSFGRP 434

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                  I+V        + +          D K H + +     G++  V   +  +  
Sbjct: 435 IENPTVQIDV--------ESAERFGIVVHDGDKKVHPIILHCSPTGSVERVLCGLLENAY 486

Query: 335 GKGIIWPD-----SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              +          + P +  +I +    +   +   ++  +L   G    +DD  E +G
Sbjct: 487 LNTLENKPPALPTWLTPIQARVIPVGDKHE---EYALEVVNKLRSSGIRADFDDREESMG 543

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-----REDMSLEEVINYASHR 441
            +   A        V++G   +   K+ +  R         +E +S+EE+I   S  
Sbjct: 544 KKIRNAGTDWVNYVVVIGDSEMESGKLTVTVREESELKKPKKESLSVEELIEKISSE 600


>gi|330466285|ref|YP_004404028.1| prolyl-tRNA synthetase [Verrucosispora maris AB-18-032]
 gi|328809256|gb|AEB43428.1| prolyl-tRNA synthetase [Verrucosispora maris AB-18-032]
          Length = 468

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 58/408 (14%), Positives = 122/408 (29%), Gaps = 59/408 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDK 102
           P G    + + A + +     GA     P          E+   + +  E+  +     K
Sbjct: 39  PAGYAIWERMQAEMDDRIKAAGAENAYFPLFIPESYLKREAEHVEGFSPELAVVTHGGGK 98

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 99  QLAEPVVVRP-------------------------------------------------- 108

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +         K   SY  +   L   +  +R E  P     + EF+     G T   
Sbjct: 109 --TSETVIGEFMAKWIDSYRDLPLLLNQWANVVRWELRPRIFLRTSEFL--WQEGHTAHA 164

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             +D   +     +  ++D++     +        A           +  E      + +
Sbjct: 165 TREDARAYARKILHEAYEDLMVNVLGIPVVVGLKTARERFAGATATYTC-EGMMGDGKAL 223

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++G     G  ++     ++  A+G   +    S+G  + R++  +I    D  G+  P 
Sbjct: 224 QLGTSHELGQNFAKAFDISYSSAEGGREHAWTTSWGT-STRMLGGLIMCHGDDNGLRVPP 282

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFP 401
            +AP +  ++ +K  D    +A  K+   L   G  V  DD  +   G +   A+L G+P
Sbjct: 283 KLAPVQAYVMVVKDGD-GVGEAAAKLRDALRDAGVRVALDDRTDTPFGRRAVDAELRGYP 341

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++V VG + ++     +  R  G +    + +V+         ++  L
Sbjct: 342 VRVEVGPRDLAAGNAVVVRRTDGSKAPTPIADVVGAVLAALDADQQAL 389


>gi|207742946|ref|YP_002259338.1| threonyl-trna synthetase protein [Ralstonia solanacearum IPO1609]
 gi|206594341|emb|CAQ61268.1| probable threonyl-trna synthetase protein [Ralstonia solanacearum
           IPO1609]
          Length = 268

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 91/300 (30%), Gaps = 36/300 (12%)

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G+MR R F+  DA+ F  T                 ++   G +++ ++    P     
Sbjct: 3   HGLMRVRGFVQDDAHIFC-TEGQIMAEAKDFNDLAFSVYEDFGFENVAVKLALRPDKRAG 61

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + E    A+ G      +       +P E                  A Y    + H   
Sbjct: 62  TDEIWDHAEEGLRTALRACGVEWEELPGE-----------------GAFYGPKVEYH--- 101

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVV 325
           + D++  + +     +++      G        A +   D        +    +G+    
Sbjct: 102 IKDAIGRSWQCGTLQLDLVLPERLG--------AEYVAEDNSRKRPVMLHRAILGSFERF 153

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++  +H G   +W        +S+           +  E +   L K G     D   
Sbjct: 154 LGILLENHAGALPLWLAPEQVVVMSIA------DAHAEYAETVAQSLQKQGFRASADLRN 207

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E+I  +     L   P  V+VG K    ++V ++ R       M +   +    +  +N 
Sbjct: 208 EKITYKIREHSLQKVPYLVVVGDKERDGNQVAVRARGNVDLGSMPVSAFVERLQNDLANK 267


>gi|169806754|ref|XP_001828121.1| prolyl-tRNA synthetase [Enterocytozoon bieneusi H348]
 gi|161779249|gb|EDQ31273.1| prolyl-tRNA synthetase [Enterocytozoon bieneusi H348]
          Length = 501

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 65/421 (15%), Positives = 123/421 (29%), Gaps = 72/421 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ-SADLWVESGRYDSYGKEMLRL 96
           G +   P        +      E  +    E   P L    ++  E    +++  E+  +
Sbjct: 38  GCFIIRPNAMGIWKQIQNWFNSELEKRNIEECYFPLLITKKNMEKEKNHLNNFNPELAWI 97

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               +K +       PT E +M   F   + ++R+LP    Q     R E++     +R 
Sbjct: 98  THCGNKKLDDPVGIRPTSEAIMYPSFAKWLNTHRDLPLKLNQWCSVLRWEVKSTLPFIRG 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++                             G      + ++     D+ + +  
Sbjct: 158 REFLWQE-----------------------------GHTVYHKQIDAQNEVKDILNLYSY 188

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           + +                   E         L S  E +          +   L   +P
Sbjct: 189 VYE-------------------ELLAVPVYKGLKSKNETFGGAE------YTLSLEAFIP 223

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIES 331
           E    + RGI+     + G  +S                  +     G   R +      
Sbjct: 224 E----TGRGIQAATSHHLGDNFSKIFDIKVNDDKYPGSKSFVYQNSWGLTTRAIGIAAMI 279

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHD-------QVCRDACEKIYARLSKVGCDVFWDDM 384
             D KG +    VA  ++ +I                +     I   L K    V  DD 
Sbjct: 280 HSDNKGFVCSPRVAHIQVVIILCGIKKTHTPNEIDSLKKYANNIQYELKKHNIRVLIDDK 339

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             + +G +F   +L G PL+  +G   ++  +V    R TG ++      +I       +
Sbjct: 340 DNQSVGFKFNNWELKGVPLRFEIGFNDMNKEEVCCVRRDTGEKKSFHTSRIIELTQLEMN 399

Query: 444 N 444
           +
Sbjct: 400 D 400


>gi|66793366|ref|NP_001019409.1| bifunctional aminoacyl-tRNA synthetase [Rattus norvegicus]
 gi|37654316|gb|AAQ96263.1| LRRGT00050 [Rattus norvegicus]
          Length = 1486

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 59/423 (13%), Positives = 107/423 (25%), Gaps = 74/423 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
             G Y   P      +++      E  + G      P   S   L  E      +  E+  
Sbjct: 1018 SGCYILRPWSYSIWESIKDFFDAEIKKLGVENCYFPIFVSQGALEKEKNHIADFAPEVAW 1077

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R           
Sbjct: 1078 VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVR----------- 1126

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
              EF                                   K       +        H   
Sbjct: 1127 -WEF-----------------------------------KHPQPFLRTREFLWQEGHSAF 1150

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               +    +V    +                       +     Y  T +          
Sbjct: 1151 ATFEEAADEVLQILELYARVYEELLAIPVVRGRKTEKEKFAGGDYTTTLEAFISA----- 1205

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIE 330
                  S R I+     + G  +S      F+                G   R +  +I 
Sbjct: 1206 ------SGRAIQGATSHHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGLTTRTIGVMIM 1259

Query: 331  SSHDGKGIIWPDSVAPFKISLINIKAHD-------QVCRDACEKIYARLSKVGCDVFWDD 383
               D  G++ P  VA  ++ +I     +       +     C +   RL         D 
Sbjct: 1260 VHGDNMGLVLPPRVASVQVVVIPCGITNTLSEEDREALMAKCNEYRRRLLGADIRARVDL 1319

Query: 384  MGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHR 441
                  G +F   +L G P+++ VG + +     V ++ R TG +  ++ +E  +     
Sbjct: 1320 RDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVR-RDTGEKLTIAEKEAESKLKGV 1378

Query: 442  FSN 444
              +
Sbjct: 1379 LED 1381


>gi|197294712|ref|YP_001799253.1| prolyl-tRNA synthetase [Candidatus Phytoplasma australiense]
 gi|259511611|sp|B1VAN9|SYP_PHYAS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|171854039|emb|CAM12012.1| Prolyl-tRNA synthetase [Candidatus Phytoplasma australiense]
          Length = 474

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 128/385 (33%), Gaps = 59/385 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   +LP G    +N+   +  E  +TG   +  P + S  L+  E      +       
Sbjct: 38  GFIIYLPYGYALWENIQKYLNYEFQKTGHQNVYFPLVFSEKLFQKEKDHIQGFSP----- 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                                   ++ L
Sbjct: 93  -----------------------------------------------EAAMITSTGQKEL 105

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +       +       Y K+  SY  +          +R E          EF+     
Sbjct: 106 FEKLVIRPTSEVLFSQYYAKIISSYRDLPKLYNQFCNVVRWEKATKPFLRGKEFL--WQE 163

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     K+ +D  + +      + +    +   +        +     L     E   
Sbjct: 164 GHTVHATEKEALDQTLFA--IQLYEKLGKELLALPFVCGRKTEKEKFAGALITYSIEALM 221

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   Y GT ++      F+  D ++ YV   S+G+ + R++ A+I    D +
Sbjct: 222 QDGQALQAGTSHYLGTNFAQSFQIQFQDQDHQNKYVHQTSWGV-STRLIGALIMVHSDDE 280

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+I P  +AP +I +I ++  +++ +   +KI+  L      V  D   +  G +F+  +
Sbjct: 281 GLILPPYIAPIQIVIIPLQPKNELVQAEAKKIFDDLKTT-YRVHLDLQNKTPGWKFSQYE 339

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHR 421
           L G PL++ +G++ ++  +V I  R
Sbjct: 340 LKGVPLRIEIGARDLAQGEVTIFQR 364


>gi|148377386|ref|YP_001256262.1| prolyl-tRNA synthetase [Mycoplasma agalactiae PG2]
 gi|148291432|emb|CAL58817.1| Prolyl tRNA synthetase (Proline tRNA ligase) [Mycoplasma agalactiae
           PG2]
          Length = 478

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 146/413 (35%), Gaps = 68/413 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P      + +   + E         + +P      L   E      +  E+  +
Sbjct: 35  GTLIFKPNSYGIWEQIQKALNEIFRGLKVQNVYLPLFIPDRLLAKEKEHIAGFNPELATI 94

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               DK +       PT E +  D+F+  I S+++LP  + Q     R E +     +RS
Sbjct: 95  TKVGDKELDQKIYVRPTSEVLFADLFKKMIVSHKDLPILYNQWANVVRWE-KTTNPFLRS 153

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REFL ++        + +  +                                       
Sbjct: 154 REFLWQE---GHTCHKSAIEARKLTREMIN------------------------------ 180

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                   V+         IP+       II   +  E++    +  +            
Sbjct: 181 --------VYAKFLKNYLAIPT-------IIGKKTPYEKFAGACSTYT-----------V 214

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   Y    +S     +FK    +D +V   S+G+ + R++ A+I + 
Sbjct: 215 EAMMKDGKALQAGTSHYLAQNFSKRFEISFKNDKNEDEFVYQTSWGV-STRLLGAIIMTH 273

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            D +GII P  VAP ++ ++ + A+ Q    D C ++  +L +    V  D   +  G +
Sbjct: 274 GDNRGIIIPPKVAPVQVDILELFANKQPKVHDFCNELAKQLERK-FRVRLDSTDKSPGYK 332

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + +++ G PL++ VG K + +  V I  R T  +  +S+  V +      ++
Sbjct: 333 ASNSEIQGVPLRIEVGPKDLENKTVTIVRRDTLEKTIVSVSYVKSKVRELLNS 385


>gi|90410628|ref|ZP_01218644.1| threonyl-tRNA synthetase [Photobacterium profundum 3TCK]
 gi|90328869|gb|EAS45153.1| threonyl-tRNA synthetase [Photobacterium profundum 3TCK]
          Length = 426

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 69/187 (36%), Gaps = 5/187 (2%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD       L L    + Q + G+  W   G      +   IRE+
Sbjct: 227 KLLKAHLTRLEEASKRDHRKIGKHLDLF--HMQQEAPGMVFWHHNGWTIFRELEVFIREK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
                  E+  P +    LW  SG +D Y + M       ++     P +      IF  
Sbjct: 285 LTEYEYQEVKGPLMMDRVLWERSGHWDKYAEAMFT-TSSENREYAIKPMNCPGHVQIFNQ 343

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +KSYR+LP    +     R+E      G+MR R F   DA+ F    +  +   + + +
Sbjct: 344 GLKSYRDLPLRMAEFGACHRNEPSGALHGIMRVRGFTQDDAHVFCTENQVQQEVTSCIKM 403

Query: 180 SYLRIFH 186
            Y     
Sbjct: 404 VYDTYQT 410


>gi|289450634|ref|YP_003474779.1| proline--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185181|gb|ADC91606.1| proline--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 483

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 67/417 (16%), Positives = 123/417 (29%), Gaps = 74/417 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG   +++P      L   E      +  E+   
Sbjct: 39  GCMVIRPYGYAIWENMKQDLDRRFKATGHENVAMPMFIPESLLQKEKDHVQGFAPEV--- 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                             +        L
Sbjct: 96  -------------------------------------------------AWVTHGGDALL 106

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF-----I 211
            +       +       Y ++  SY  +          +R E        + EF      
Sbjct: 107 PERLCVRPTSETLFCDHYARIIQSYRDLPKLYNQWCSVVRWEKTTRPFLRTMEFFWQEGH 166

Query: 212 VLADTGETQVFCSKDFMDFPIP--SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            + +T E  +  ++  ++       E      I    +  E++                 
Sbjct: 167 TVHETAEEAIAETERMLNVYADFLREVLAIPVIKGRKTDKEKFAG-----------AEMT 215

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E      + ++ G   YFG  ++      F   + K  Y    S+G+ + RV+ A+I
Sbjct: 216 YTVEALMHDGKALQSGTSHYFGDGFARAFGIQFSDRENKLQYCHETSWGM-STRVIGAMI 274

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQ 387
               D  G++ P  VAP +I LI I  H      A   +  RL K   G  V  D   + 
Sbjct: 275 MVHSDDSGLVLPPRVAPVQIMLIPIAMHKDGVLPAVFALRDRLQKASYGFRVKVDASDKM 334

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            G +F+  ++ G PL++ +G + +    V    R TG +  + LE + +  +     
Sbjct: 335 PGWKFSEQEMRGIPLRLEMGPRDIEQGSVVAVRRDTGAKTILPLEGIEDALAKLLDE 391


>gi|289177374|gb|ADC84620.1| Glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 638

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 68/440 (15%), Positives = 137/440 (31%), Gaps = 42/440 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +  +++WV SG    +     E L
Sbjct: 180 WDYGPLGVALKDNIKREWWRSMVVTRPDVVGVDTSIILPSEVWVASGHVSVFNDPLIECL 239

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R+    +     E+    +  + +K                  E R    ++R+  
Sbjct: 240 TCHKRHRADKLEESYAEKHNDQLPPNGLKDIVCPDCGTRGNWT----EPRDFNMMLRTHL 295

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +              G            I    
Sbjct: 296 GPVEDENSLHYLRPETAQGIFVDFKNVMTSSRSKPPFGIANTGKSFRNEITPGNFIFRTR 355

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E       +           + +++       E+       T D
Sbjct: 356 EFEQMEMEFFVEPGTDEDWHQYWINARTQWYIDLGVNPENLRHYEHPKEKLAHYSKRTVD 415

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     F      +     G+     F  G   K+S    + F  A G+ +   +     
Sbjct: 416 IEYRFGFQGSDWGELE---GVANRTDFDLGAHAKHSGEDLSYFNQATGEKYIPYVIEPAA 472

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++D                      +AP K +++ +    ++     +
Sbjct: 473 GLSRSLMAFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQS-VAQ 531

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L      + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +
Sbjct: 532 DLAQDLRLNDWMIDYDESGA-IGRRYRRQDEIGTPLCITVDFDTLDDQAVTIRERDTMQQ 590

Query: 427 EDMSLEEVINYASHRFSNNR 446
           E ++L +V +Y + R ++ R
Sbjct: 591 ERVALTQVADYVAKRINDKR 610


>gi|239614077|gb|EEQ91064.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis ER-3]
 gi|327353430|gb|EGE82287.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 607

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 73/451 (16%), Positives = 136/451 (30%), Gaps = 86/451 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + +      +  + G    S P   S D L 
Sbjct: 109 QQVLLKGQMLDYYDVSGCFILKPHSYFIWETIQEWFNNKIKKMGVKNCSFPLFVSEDVLK 168

Query: 81  VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +    + A+       PT E VM   +   I+S+R+LP    Q  
Sbjct: 169 KEKDHIEGFAAEVAWVTHAGNSALERKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWN 228

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT  G++    ++                   
Sbjct: 229 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTEAGAREEVLQILE----------------- 271

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                      H   V  D                IP       D        +     Y
Sbjct: 272 -----------HYAHVYEDL-------------LAIPVIRGQKTDKE------KFAGGLY 301

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             T + +              + RGI+ G     G  +S     T +    K    +   
Sbjct: 302 TTTVEGYIPA-----------TGRGIQGGTSHCLGQNFSKMFGITVEDPSAKPEEKKPAL 350

Query: 317 YGIGA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDA 364
           +          R +  ++    D +G++ P  VA  +  ++ +        A        
Sbjct: 351 HVWQNSWGLSTRTIGIMVMVHGDDRGLVIPPRVADIQTVIVPVGTGARTTEAEKTALMAE 410

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-- 422
            + + A L  VG  V  D      G +F   +L G PL++  G    +   V    R   
Sbjct: 411 IDALAAVLQAVGVRVEVDKRDYTPGWKFNDWELHGVPLRLEFGPGESAGHYVTASRRDIL 470

Query: 423 TGI-REDMSLEE-------VINYASHRFSNN 445
               +  + + E       ++          
Sbjct: 471 GKDGKSTIPITELGVQVPALLETIQADLYKR 501


>gi|154335629|ref|XP_001564053.1| bifunctional aminoacyl-trna synthetase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134061084|emb|CAM38105.1| putative prolyl-tRNA synthetase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 719

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 125/409 (30%), Gaps = 74/409 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P        V   +     R G  +   P   S   L  E    + +  E+  
Sbjct: 241 SGCYIIRPWAYYVWKCVQRFLGGRIERLGVEDCYFPMFVSRSCLEREKDHIEGFAPEVAW 300

Query: 96  LADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D  +       PT E VM   +   I+S+R+LP          R E       +R
Sbjct: 301 VTRAGDTELEQPVAVRPTSETVMYPYYAKWIRSHRDLPVRLNMWNNVIRWEFSHPTPFIR 360

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ +      E                                           
Sbjct: 361 TREFLWQEGHCAWAKAEDCAKEVL------------------------------------ 384

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVHNEKLFDS 270
              D  E      +  +  P+         +    +  E++    Y  T +   E +   
Sbjct: 385 ---DILECYAAVYEQLLAVPV---------VRGRKTEKEKFAGGSYTTTVETFIEAVG-- 430

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVI 329
                    RG +       G  +       F+  +  +  +       G + RV+  +I
Sbjct: 431 ---------RGCQGATSHNLGQNFGKMFDIRFQDPENNEQTLIPWQNSWGLSTRVIGVMI 481

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLSKVGCDVFWD 382
               D +G++ P  VA  ++ ++ +        +A       C ++   L + G     D
Sbjct: 482 MVHGDNRGMVMPPRVASTQVIIVPVGITKDTTEEARQALLASCRQLEGELCEGGVRAKCD 541

Query: 383 DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
                  G +F   ++ G PL+V +G + +++  + +  R +  ++ ++
Sbjct: 542 LRDNYSPGWRFNHWEVKGVPLRVELGPRELAERSLVVAVRHSCAKQSLT 590


>gi|207742945|ref|YP_002259337.1| threonyl-trna synthetase protein [Ralstonia solanacearum IPO1609]
 gi|206594340|emb|CAQ61267.1| probable threonyl-trna synthetase protein [Ralstonia solanacearum
           IPO1609]
          Length = 379

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 4/148 (2%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    + + + G+  W P G +    V   +R     
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HLQEEAPGMVFWHPKGWQIWQAVEQYMRGRLAG 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P +    LW  SG + +Y + M  + +   +     P +      IF   ++
Sbjct: 287 AGYSEVRTPQVMDRTLWEHSGHWQNYKENMF-VTESEKREYAIKPMNCPGHVQIFNHGLR 345

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           SYR+LP    +     R+E       ++
Sbjct: 346 SYRDLPLRLAEFGANHRNEPSGALHGLK 373


>gi|219128900|ref|XP_002184639.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403748|gb|EEC43698.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 479

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 62/413 (15%), Positives = 120/413 (29%), Gaps = 68/413 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P   K  + +      +    G      P   S D L  E    + +  E+  
Sbjct: 8   SGCYILRPWSYKMWELIQVWFNAKIEDMGVENAYFPLFVSQDRLEKEKDHVEGFAPEVAW 67

Query: 96  LADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +  +       PT E +M   +   IKS+R+LP    Q     R E         
Sbjct: 68  VTRSGEGDLARPIAVRPTSETIMYPAYSDWIKSHRDLPLKLNQWSNVVRWE--------- 118

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                                                  K       +        H   
Sbjct: 119 --------------------------------------FKYPTPFLRTREFLWQEGHTAH 140

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +  +  V      +   +  +      +    +  E++   +  T+           
Sbjct: 141 ATFEDADATVM-EALELYRGVYEDLLAVPVVPGYKTEKEKFAGGFRTTTVEAYIA----- 194

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 S R I+       G  +      +F+   G+       S+G+   R +  ++  
Sbjct: 195 -----GSGRAIQGATSHNLGQNFGKMFEISFQNEKGESQIPWQTSWGL-TTRTIGVMVMV 248

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGE-Q 387
             D  G++ P  VAP ++ ++ I +     +     C  I A L K G    +DD     
Sbjct: 249 HGDDTGLVLPPRVAPLQVVIVPIISKKLTPEQADPYCLSILADLKKAGLRAKYDDRSAYN 308

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            G ++   +  G P+++ VG + +      +  R    +ED  +E + +   +
Sbjct: 309 PGWKYNHWEQKGVPVRIEVGPRDIEQKSARVVVRHNSDKEDHPVEGLGSLLRN 361


>gi|71991342|ref|NP_001022777.1| Prolyl tRNA Synthetase family member (prs-1) [Caenorhabditis
           elegans]
 gi|459009|gb|AAA50660.1| Prolyl trna synthetase protein 1, isoform a [Caenorhabditis
           elegans]
          Length = 581

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 68/428 (15%), Positives = 127/428 (29%), Gaps = 69/428 (16%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ-SADLWVESGR 85
           +  MI  +   G Y   P      +++         + G      P    +A L  E   
Sbjct: 109 KAEMIEYYDVSGCYVLRPWSFAVWESIQEWFDSGIKKLGVKNCYFPMFVSNAALEREKTH 168

Query: 86  YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
              +  E+  +    +  M       PT E VM   ++  ++S+R+LP    Q     R 
Sbjct: 169 IADFAPEVAWVTRAGNSEMAEPIAIRPTSETVMYPSYKKWVQSHRDLPIKLNQWCNVVR- 227

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                       EF          TP      +              G  +    A+   
Sbjct: 228 -----------WEF-------KHPTPFLRTREFLWQ----------EGHTAFANPAD--- 256

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                           E +VF   D                   +   +     +  T +
Sbjct: 257 ---------------AEKEVFQILDLYAGVYTDLLAIPVVKGRKSEKEKFAGGDFTTTVE 301

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG- 320
            +              + RGI+     + G  +S     +++    +           G 
Sbjct: 302 AYVA-----------CNGRGIQGATSHHLGQNFSKMFDISYEDPAKEGERAFAWQNSWGL 350

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSKVGC 377
           + R + A++    D KG++ P  VA  ++ ++ +       Q   DA +K+   L   G 
Sbjct: 351 STRTIGAMVMIHGDDKGLVLPPRVAAVQVIVVPVGFKTENKQSLFDAVDKVTKDLVADGV 410

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               D       G +F   +L G P++  VG   ++ ++V    R  G ++ +SLE +  
Sbjct: 411 KAEHDLRENYNAGWKFNHWELKGVPIRFEVGPNDLAKNQVTAVIRHNGEKKQLSLEGLSK 470

Query: 437 YASHRFSN 444
                   
Sbjct: 471 TVKSLLDE 478


>gi|261204761|ref|XP_002629594.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239587379|gb|EEQ70022.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
          Length = 606

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 73/451 (16%), Positives = 136/451 (30%), Gaps = 86/451 (19%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + +      +  + G    S P   S D L 
Sbjct: 109 QQVLLKGQMLDYYDVSGCFILKPHSYFIWETIQEWFNNKIKKMGVKNCSFPLFVSEDVLK 168

Query: 81  VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +    + A+       PT E VM   +   I+S+R+LP    Q  
Sbjct: 169 KEKDHIEGFAAEVAWVTHAGNSALERKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWN 228

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT  G++    ++                   
Sbjct: 229 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTEAGAREEVLQILE----------------- 271

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                      H   V  D                IP       D        +     Y
Sbjct: 272 -----------HYAHVYEDL-------------LAIPVIRGQKTDKE------KFAGGLY 301

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             T + +              + RGI+ G     G  +S     T +    K    +   
Sbjct: 302 TTTVEGYIPA-----------TGRGIQGGTSHCLGQNFSKMFGITVEDPSAKPEEKKPAL 350

Query: 317 YGIGA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDA 364
           +          R +  ++    D +G++ P  VA  +  ++ +        A        
Sbjct: 351 HVWQNSWGLSTRTIGIMVMVHGDDRGLVIPPRVADIQTVIVPVGTGAKTTEAEKTALMAE 410

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-- 422
            + + A L  VG  V  D      G +F   +L G PL++  G    +   V    R   
Sbjct: 411 IDALAAVLQAVGVRVEVDKRDYTPGWKFNDWELHGVPLRLEFGPGESAGHYVTASRRDIL 470

Query: 423 TGI-REDMSLEE-------VINYASHRFSNN 445
               +  + + E       ++          
Sbjct: 471 GKDGKSTIPITELGVQVPALLETIQADLYKR 501


>gi|213024165|ref|ZP_03338612.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 194

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 93/170 (54%), Positives = 123/170 (72%)

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           REE N  GAIE+S+P +Q ADLW ESGR++ YG E+LR  DR ++  + GPTHEEV+TD+
Sbjct: 1   REEMNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGERPFVLGPTHEEVITDL 60

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
            R+ + SY+ LP  F+QIQ KFRDE+RPRFGVMRSREFLMKDAYSF  + E  + +Y+ M
Sbjct: 61  VRNELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDAYSFHTSQESLQETYDAM 120

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           + +Y RIF R+GL    ++A++G IGG+ SHEF VLA +GE  +      
Sbjct: 121 YAAYSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGEDDIVFLMFL 170


>gi|198425469|ref|XP_002126649.1| PREDICTED: similar to glutamyl-prolyl-tRNA synthetase [Ciona
            intestinalis]
          Length = 1442

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 64/420 (15%), Positives = 114/420 (27%), Gaps = 72/420 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
             G Y   P      + +      E  + G      P   S A L  E    D +  E+  
Sbjct: 973  SGCYILRPWSYGIWEKIKEFFDAEIKKLGVENSYFPIFVSQAALEREKNHIDDFAPEVAW 1032

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    +  +       PT E VM   +   I+S+R+LP  + Q     R           
Sbjct: 1033 VTKSGETELQEPIAVRPTSETVMYPAYAKWIQSHRDLPLKYNQWCNIVR----------- 1081

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
              EF                                   K       +        H   
Sbjct: 1082 -WEF-----------------------------------KHPQPFLRTREFLWQEGHTAF 1105

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              A   + +V    D                       +     Y  T +          
Sbjct: 1106 AEAKEAQEEVLQILDLYAQVYEDLLAIPVVCGRKTDKEKFAGGDYTTTVEAFISA----- 1160

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIE 330
                  S R I+     + G  +S     +F+  +     V       G   R +  ++ 
Sbjct: 1161 ------SGRAIQGATSHHLGQNFSKMFDISFEDPNQPVKNVIAYQNSWGLTTRTIGVMVM 1214

Query: 331  SSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDD 383
               D KG++ P  VA  ++ ++             +V    C+   ++L  VG     D 
Sbjct: 1215 VHGDDKGLVLPPKVANLQVVIVPCGVTASLPEEDKKVLYSKCDDYLSKLKSVGIRAKSDT 1274

Query: 384  MGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
                  G +F   +L G P+++ VG + +   +  +  R  G +  +   +V    +   
Sbjct: 1275 RDNYSPGWKFNHWELKGVPIRLEVGPRDLKQQQCVVVLRHDGRKITIPDADVTTSIADLL 1334


>gi|284052870|ref|ZP_06383080.1| threonyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 508

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 101/332 (30%), Gaps = 27/332 (8%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L      Q   G+  W P G      +   ++ EQ R G   + 
Sbjct: 196 EEALRRDHRRLGKELGLFI-FSDQVGPGLPLWTPKGTILRTTLEDFLKREQVRRGYQPVV 254

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLP 129
            P L   +L+  SG +  Y +++  +   ++    +    +      I++S ++SYR LP
Sbjct: 255 TPHLGRVNLFKTSGHWQKYREDLFPMMGESEDEGFVLKAMNCPFHVQIYKSSLRSYRELP 314

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
               +    +R E     G +       +D     +TPE     + K+      +  +L 
Sbjct: 315 IRLAEFGTVYRYEQSGELGGLTRVRGFTQDDAHLFVTPEQLDDEFLKVVDLIQSVLKKL- 373

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                 + +            +   D    +   S    +    +     + +       
Sbjct: 374 ------KLDQSFKAR------LSFRDPNSDKYIGSDQAWEKAENAIRRAVETLGMNYFEG 421

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D     + D+L    ++    ++                  +   DG  
Sbjct: 422 IGEAAFYGPKLDFI---VQDALEREWQLGTVQVDYNLP--------ERFDLEYVAEDGTR 470

Query: 310 HYV-QMGSYGIGAMRVVAAVIESSHDGKGIIW 340
                +     G++  +  ++   + G   +W
Sbjct: 471 QRPVMIHRAPFGSLERLIGILIEEYTGDFPLW 502


>gi|116620962|ref|YP_823118.1| prolyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
 gi|122255000|sp|Q027I0|SYP_SOLUE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|116224124|gb|ABJ82833.1| prolyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
          Length = 480

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 136/409 (33%), Gaps = 75/409 (18%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKA 103
            G    + +   + +    T    +  P L     L  E+   + +  E+  +     K 
Sbjct: 42  NGYAVWEVLQRELDDRFKATNHQNVYFPLLIPQSFLKKEAEHVEGFAPELAVVTVAGGKE 101

Query: 104 ----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
                +  PT E ++   F   I SYR+LP  + Q     R ELR R  + R+ EFL ++
Sbjct: 102 LEEPYVIRPTSETIIGHFFSKWIHSYRDLPLLYNQWANVIRWELRTRMFL-RTTEFLWQE 160

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                      + +  ++                                          
Sbjct: 161 ---GHTAHSNHEEAVEEVLRILDLYAQ--------------------------------- 184

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                       +  +      I  + +  E++              L     E    + 
Sbjct: 185 ------------VAEDIMAMPVIKGVKTHAEKFAG-----------ALKSYSIEAMMQNG 221

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
             ++ G     G  +       F+  +G+  YV   S+G+ + R++  +I +  D KG++
Sbjct: 222 LALQAGTSHDLGQNFGKAFDVQFQSKEGQLEYVWQTSWGV-STRLIGGLIMTHSDDKGLV 280

Query: 340 WPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
            P  +AP K  ++ I   ++      +A  +I             DD  G+  G++F   
Sbjct: 281 LPPKLAPVKSVIVPIYRKEEERAAVLEAAHRIAKE-----IGAKVDDREGQSPGAKFFHW 335

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +  G P+ + +G + ++  K+ +K R TG +E +   EV    +    +
Sbjct: 336 ERRGVPVVLELGPRDLASGKIVLKRRDTGTKEPIDQSEVGAKVAAALED 384


>gi|296804108|ref|XP_002842906.1| prolyl-tRNA synthetase [Arthroderma otae CBS 113480]
 gi|238845508|gb|EEQ35170.1| prolyl-tRNA synthetase [Arthroderma otae CBS 113480]
          Length = 600

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/444 (15%), Positives = 134/444 (30%), Gaps = 80/444 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +       + G    S P   S D L 
Sbjct: 101 QQVLLKGEMLDYYDVSGCFVLKPHSFFIWEQIQSWFDANIKKMGVKNCSFPLFVSEDVLK 160

Query: 81  VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +    +  +       PT E VM   +   I+S+R+LP    Q  
Sbjct: 161 KEKDHIEGFAAEVAWVTHAGNSPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 220

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT E +     ++                   
Sbjct: 221 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTKEEAHEEVLQILQ----------------- 263

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                                       +      I  + TD +               Y
Sbjct: 264 ---------------------HYAHVYEQLLAVPVIQGQKTDKEKFA---------GGLY 293

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             T + +              + RGI+ G     G  +S     T +    +    +   
Sbjct: 294 TTTVEGYIPA-----------TGRGIQGGTSHGLGQNFSKMFGITVEDPSARPDEKKPPL 342

Query: 317 YGIGA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH----DQV---CRDA 364
           +          R +  ++    D +G++ P  VA  +  ++ +       D+        
Sbjct: 343 HVWQNSWGLSTRTIGVMVMIHGDNRGLVLPPRVADIQTVIVPVGLGAKTPDEERASIMAE 402

Query: 365 CEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL- 422
            E I   LS  G  V  D       G +F   +L G PL++  G    + S V    R  
Sbjct: 403 IEAIATVLSAAGVRVEVDKRDGYTPGWKFNDWELKGIPLRLEFGPGESAGSFVTTSRRDI 462

Query: 423 -TGI-REDMSLEEVINYASHRFSN 444
                +  + ++E+          
Sbjct: 463 AGKEGKSSIPIKELGTAVPALLET 486


>gi|261749214|ref|YP_003256899.1| prolyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497306|gb|ACX83756.1| prolyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 490

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 136/424 (32%), Gaps = 59/424 (13%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGR 85
           +R  MI +         P G    + +   + +    TG   +  P L     +  E   
Sbjct: 30  IRGFMIIK---------PYGFSIWEIIKNTLDKMFKETGHKNVYFPMLIPKSSFSKEKKH 80

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
             ++ KE                    ++T            L                 
Sbjct: 81  IANFSKE------------------CAIVTHCKLKKNTDQEELTVDPKSK---------- 112

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
                     L ++      +      ++     SY  +   L      +R E       
Sbjct: 113 ----------LQEELVIRPTSESIIWKTFRHWIHSYRDLPLLLNQWGNAIRWEMRTRLFL 162

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD-DIISLNSIVEQWTAPYAATSDVHN 264
            + EF+     G T     K+ ++      N   D     +   V Q   PY    D  +
Sbjct: 163 RTSEFL--WQEGHTAHSTEKEAIEETKKILNIYTDFSEKIMAIPVVQGMKPY---MDKFS 217

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                   E      + +++G   + G  +S      F   +GK  YV   S+G+ + R+
Sbjct: 218 GSETTFSLEAMMQDGKALQIGTSHFLGQNFSKAFDVKFTNKNGKKEYVWSTSWGV-STRL 276

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFW 381
           +  ++    D  G+I P  +AP +I +I I  + Q      +  E+I   + + G  V +
Sbjct: 277 IGGIVMLHSDDHGLILPPKIAPIQIVIIPIYKNKQELSKINEIAERIQKIIKEKGFSVKY 336

Query: 382 DDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D+      G +F   ++ G P+++ +G   +   K E+  R T  + D+S  ++I +   
Sbjct: 337 DNREIFTPGWKFHEYEMKGIPIRINIGLDEIIKEKAEVFRRDTYEKVDVSWNQIITFIPK 396

Query: 441 RFSN 444
               
Sbjct: 397 LLEK 400


>gi|254382003|ref|ZP_04997365.1| prolyl-tRNA synthetase 2 [Streptomyces sp. Mg1]
 gi|194340910|gb|EDX21876.1| prolyl-tRNA synthetase 2 [Streptomyces sp. Mg1]
          Length = 470

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/408 (13%), Positives = 126/408 (30%), Gaps = 60/408 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +       GA     P       L  E+   + +  E+  +     K
Sbjct: 41  PYGYGLWERMQQEMDARIKDAGAQNAYFPLFIPQSYLTKEAEHVEGFAPELAVVTHGGGK 100

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 101 ELEEPVVVRP-------------------------------------------------- 110

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +       ++K   SY  +   +   +  +R E  P     + EF+     G T   
Sbjct: 111 --TSETIINDYFSKWVQSYRDLPLLINQWANVVRWEMRPRVFLRTSEFL--WQEGHTAHA 166

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             +D  D+        + D ++    ++       A           +L E      + +
Sbjct: 167 TYEDARDYAARIHTDVYGDFMTNVLGIDVVLGRKTAKERFAGAINTLTL-EGMMGDGKAL 225

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++G     GT ++   +  +   +GK   V   S+G+ + R+V  +I S  D  G+  P 
Sbjct: 226 QLGTSHELGTNFAKAFNTQYLSKEGKQELVWQTSWGV-STRMVGGLIMSHGDDNGLRVPP 284

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFP 401
            +A  ++ ++ I            ++ A+L   G  V  DD  +   G +    +L G P
Sbjct: 285 RLAHVQVVVMAI--KGDEAVAKVRELGAQLKAAGLRVQVDDRVDTPFGRRAVDWELKGVP 342

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +++ +G + + +    +  R+ G +E + +  +++        ++  L
Sbjct: 343 VRIEIGPRDLENGTAMLARRIPGGKEAVQISALLDLLPKVLDEDQAQL 390


>gi|156742938|ref|YP_001433067.1| proline--tRNA ligase [Roseiflexus castenholzii DSM 13941]
 gi|156234266|gb|ABU59049.1| Proline--tRNA ligase [Roseiflexus castenholzii DSM 13941]
          Length = 564

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 2/181 (1%)

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +D+      D          R      I +     +    ATF   +G    + + S+ +
Sbjct: 385 ADISLAHPGDPCNRC-GAPLRQSSGFTIVHAIHHGAFAQDATFLDQEGVSRPIVLASFRM 443

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              R +  +IE   D  GI+W    APF + LI +   D   R A + +Y  L   G  V
Sbjct: 444 LLERALLTIIEQHCDQAGIVWTPETAPFDVHLIRLGKQD-ATRQAADALYDELIAAGIAV 502

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +DD  E  G +F  ADL+G PL++++G +F++D  VEIK R TG+   M  +E+I    
Sbjct: 503 LYDDRNETAGVKFNDADLIGLPLRLVIGDRFLTDGLVEIKQRATGMITKMPRQEIIAEVQ 562

Query: 440 H 440
            
Sbjct: 563 K 563



 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 19/299 (6%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR S  F   L+E P D +  + +LMLR G+    S G  ++LP+G + L  + A+  EE
Sbjct: 1   MRISALFGRTLRETPADIDYPALRLMLRAGLAR-LSAGALAFLPIGTRVLRRLEAMAHEE 59

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA---MIYGPTHEEVMTDI 117
             R GA E+ +P          S R  S           +D++   + + PT    +  +
Sbjct: 60  LTRIGAQEIHLP---PVRTLSASDRVQSRLLPASSTMHGSDQSRRLLAFDPTDTTTIASL 116

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
             S I SYR LP   YQ      ++ R  +     RE +    Y+        + +  ++
Sbjct: 117 AASEIASYRQLPALLYQRHPISCNDCRSSW----LREEIALTVYALGGGAHELEETGTQV 172

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-PSEN 236
           + ++ RIF R  +  I   A        ++  ++ +++ G+  +   +      I  +  
Sbjct: 173 YSAFERIFRRCDMHLIAAEAGYTGENDQVTRAYVAVSEHGDIDLMICESCSYTAIREAAR 232

Query: 237 TDFDDIISLNSIVEQWTAPYAAT----SDVHNEKLFDSLPE---NKRVSARGIEVGHIF 288
           T FD  ++ + + ++   P A      + + +   F  +PE    K V     E G IF
Sbjct: 233 TAFDSTLATSMMKDEPDHPEAIATPNCATIADLARFCGVPESATAKAVFFDSPEHGLIF 291


>gi|325971777|ref|YP_004247968.1| glycyl-tRNA synthetase [Spirochaeta sp. Buddy]
 gi|324027015|gb|ADY13774.1| glycyl-tRNA synthetase [Spirochaeta sp. Buddy]
          Length = 443

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/441 (12%), Positives = 120/441 (27%), Gaps = 38/441 (8%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADL 79
           R G I Q S       G Y + PLG +  +N+     +E  +     + +    L    +
Sbjct: 15  RRGFIFQSSEIYGGLNGAYDYGPLGVQLKNNIRDFWWKEMTQIHDDIVGLDASILMHPRV 74

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG   ++   M+       +        +            +        +   +  
Sbjct: 75  WEASGHVSNFSDPMVDCKQCKSRFRADQIDLKGACPTCGTKDSFTEPRNFNLMFATHIGA 134

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
             +                   +        K+  +   V       ++G          
Sbjct: 135 NADASSTIY---------LRPETAQGIYVDFKNVVSSSRVKIPFGIAQVGKSFRNEITTK 185

Query: 200 GPIGGDLSHEF----IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
             I      E            + + F            +       +  +       A 
Sbjct: 186 NFIFRSCEFEQMEMQWFCKPGTDEKWFSYWREQRMAFYHKMGIKPQSLRWHQHGPDELAF 245

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQM 314
           YA  +            E + V +R           +        T+      + +   +
Sbjct: 246 YAKDAYDIQFLFPMGWQELEGVHSRTDYDLTQHQTFS----GKEMTYLDPESNERYIPYV 301

Query: 315 GSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDAC 365
                G  R V   +  ++D + +          +  S+AP  ++++ +   D    +  
Sbjct: 302 VETSAGLTRNVLMALGDAYDEEELEGGDVRTVLHFHPSLAPVTVAVLPLVKKD-GIAEFA 360

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            K+   L       F+D  G  IG ++   D +G P  V V  + + D  V ++ R +  
Sbjct: 361 SKLEHELRD-DFSTFYDVSGA-IGRRYRRMDEIGTPYCVTVDYQSLEDQTVTLRLRDSME 418

Query: 426 REDMSLEEVINYASHRFSNNR 446
           +  +++ +++          +
Sbjct: 419 QVRVAITDLVATIKKATKEYK 439


>gi|83774018|dbj|BAE64143.1| unnamed protein product [Aspergillus oryzae]
          Length = 632

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 92/274 (33%), Positives = 141/274 (51%), Gaps = 6/274 (2%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           L++R G + Q   GI+  LPLG +  D +  +I +     GA ++S+ ++ S +LW  SG
Sbjct: 71  LLVRGGFLRQAYSGIFHMLPLGLRVQDKLERLIDKHMRSVGASKVSLSSISSQELWERSG 130

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           R    G E+ +  DR +   +  PTHEE +T +  S  KSYR+LP   YQI  K+RDE R
Sbjct: 131 RLGE-GSEVFKFHDRKESRFLLAPTHEEEITTLVGSLAKSYRDLPLRVYQISRKYRDEPR 189

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           PR G++R REF+MKD Y+FD T E +  +Y  +  +Y R+F+ L +  +   A+SG +GG
Sbjct: 190 PRQGLLRGREFIMKDLYTFDCTVEEALETYTSVKAAYTRLFNDLKIPYLVAAADSGNMGG 249

Query: 205 DLSHEFIVLADTGETQVF----CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           +LSHEF V +  GE  V     C   + D     +  +  D  S  +     T   +  +
Sbjct: 250 NLSHEFHVPSSKGEDTVISCTSCDTVYNDELADGKIHELGDNESHQASPGFDTGDMSPEA 309

Query: 261 DVHNEK-LFDSLPENKRVSARGIEVGHIFYFGTK 293
                  L+ S+ ++KR   RG          T+
Sbjct: 310 TPTISTGLWMSISKDKRTLLRGWYPKFSMQGETQ 343



 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 55/193 (28%), Positives = 100/193 (51%), Gaps = 15/193 (7%)

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK-------GADGKDHYVQM 314
           V +        + +  +   +E+GH F+ GT+YS  + A+          ++ +   +QM
Sbjct: 442 VQDGDKCAKCAQGRVKTQVAVELGHTFHLGTRYSEVLQASVMVDQSSSGSSEHQVVPMQM 501

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS- 373
           G +GIG  R++ AV +S  D KG+ WP +VAPF++ ++  K  ++      EKIY  L+ 
Sbjct: 502 GCHGIGVSRMITAVADSLADSKGLNWPRAVAPFEVIVVPAKGLEEE----AEKIYDTLTS 557

Query: 374 --KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDMS 430
                 DV  DD  +Q+G +   ADL+G+P+ V+VG  +  +  +E++ R    +RE++ 
Sbjct: 558 DPASPVDVILDDRDKQMGWKLGDADLIGYPIIVVVGKGWKKEQTLEVQCRQLDNLRENVP 617

Query: 431 LEEVINYASHRFS 443
           LE++  +      
Sbjct: 618 LEQLSTFIRSLLE 630


>gi|229030088|ref|ZP_04186151.1| Threonyl-tRNA synthetase [Bacillus cereus AH1271]
 gi|228731210|gb|EEL82129.1| Threonyl-tRNA synthetase [Bacillus cereus AH1271]
          Length = 236

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 78/252 (30%), Gaps = 17/252 (6%)

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            A+   +      E+ V   T            +    S       +     + E   A 
Sbjct: 1   MAQIDYVYKTFGFEYEVELSTRPEDSMGDDKLWEQAEASLENVLHSLDYKYRLNEGDGAF 60

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-M 314
           Y    D H   + D+L  + +     ++    F    K+       +     +      +
Sbjct: 61  YGPKIDFH---IKDALNRSHQCGTIQLD----FQMPEKFD----LNYIDEKNEKRRPVVI 109

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               +G++    A++     G    W        + +  I   + V     E +  +L++
Sbjct: 110 HRAVLGSLDRFLAILIEHFGGVFPAWVA-----PVQVKVIPVSNAVHVQYAEAVAEKLAQ 164

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V  D   E++G +   A +   P  +++G K + +  V ++       E + L   
Sbjct: 165 AGVRVERDMREEKLGYKIREAQMQKVPYVLVIGDKEMENGAVNVRKYGEEKSEVVELNGF 224

Query: 435 INYASHRFSNNR 446
           +       +N +
Sbjct: 225 VESMKEEINNRK 236


>gi|71002510|ref|XP_755936.1| prolyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66853574|gb|EAL93898.1| prolyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|159129993|gb|EDP55107.1| prolyl-tRNA synthetase [Aspergillus fumigatus A1163]
          Length = 637

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/423 (16%), Positives = 128/423 (30%), Gaps = 81/423 (19%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDK 102
           P      + +      E  + G    S P   S D+   E    + +  E+  +    + 
Sbjct: 138 PASYFIWEEIQNWFNAEIKKVGVKNCSFPLFVSEDVLQREKDHIEGFAAEVAWVTHAGNT 197

Query: 103 AMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL +
Sbjct: 198 PLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLRTREFLWQ 257

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++  LT E ++     M   Y RI+                                 
Sbjct: 258 EGHTAHLTEEAAREEVLHMLNLYARIYE-------------------------------- 285

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDSLPENKRV 277
                           E      +    +  E++    Y  T + +              
Sbjct: 286 ----------------ELLAVPVVKGQKTEKEKFAGGLYTTTVEGYIPA----------- 318

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA-----MRVVAAVIESS 332
           + RGI+ G     G  +S     T +    K    +   +          R +  ++   
Sbjct: 319 TGRGIQGGTSHGLGQNFSKMFGITVEDPSAKPDEKKPPLHVWQNSWGLSTRTLGVMVMIH 378

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------LSKVGCDVFWDDM- 384
            D +G++ P  VA  +  ++ +    +   +  EK+YA        L   G     D   
Sbjct: 379 SDNRGLVLPPRVAETQTIIVPVGITAKTSDEEREKLYAEIDSLVSLLKAAGIRADSDKRE 438

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMSLEEVINYASHR 441
           G   G +F   +L G PL++  G        V    R       +  + ++E+       
Sbjct: 439 GYSPGWKFNDWELRGVPLRIEFGPGESVGRYVTAARRDIPGKDGKSTIPIDELSTAVPAL 498

Query: 442 FSN 444
              
Sbjct: 499 LET 501


>gi|294155892|ref|YP_003560276.1| proline--tRNA ligase [Mycoplasma crocodyli MP145]
 gi|291600080|gb|ADE19576.1| proline--tRNA ligase [Mycoplasma crocodyli MP145]
          Length = 478

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 80/415 (19%), Positives = 153/415 (36%), Gaps = 68/415 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEML 94
           +KG   + P      + +   + +         + +P L    L+  E    + +  E+ 
Sbjct: 33  AKGTLIFKPNSYGIWELIQENLNKIFKEKDVENVYLPLLIPESLFNLERDHLEGFNPELA 92

Query: 95  RLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            +    DK         PT E +  D+F++ I+SY +LP  + Q     R E +     +
Sbjct: 93  TVTHVGDKELSEKYFIRPTSEVLFADLFKNSIESYNDLPIIYNQWANVVRWE-KTTNPFL 151

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           RSREFL              +  +              G+ +   +              
Sbjct: 152 RSREFLW-------------QEGHTCHSDPIEARRFTRGMITTYSK-------------- 184

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                         K+F+  P          II   +  E++    +  +          
Sbjct: 185 ------------FLKNFLAIPT---------IIGKKTPYEKFAGACSTYT---------- 213

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             E      R ++ G   Y    +S P S  FK    +D YV   S+G+ + R++ A+I 
Sbjct: 214 -IEAMMKDGRALQAGTSHYLAQNFSKPYSILFKNKKNEDEYVYQTSWGV-STRLLGAIIM 271

Query: 331 SSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           +  D +G+I P  VAP +I LI +  A     ++  ++++  L +    V  D   +Q G
Sbjct: 272 THGDNRGVIIPPRVAPVQIDLIELFAAKSPKVKEVSDELFELLRRKW-RVRVDKSDKQPG 330

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + A +++ G PL++ +G + + +++V +  R T  +  M+ +EV          
Sbjct: 331 FKAANSEIQGVPLRIEIGPRDLENNQVTLVRRDTLEKIVMNYKEVKEKVQTILDE 385


>gi|226330398|ref|ZP_03805916.1| hypothetical protein PROPEN_04316 [Proteus penneri ATCC 35198]
 gi|225201193|gb|EEG83547.1| hypothetical protein PROPEN_04316 [Proteus penneri ATCC 35198]
          Length = 238

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 63/235 (26%), Gaps = 18/235 (7%)

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           V   T   +        D           D            A Y    +     L+D L
Sbjct: 14  VKLSTRPEKRIGEDALWDIAEADLAKALTDNNIEFEYQPGEGAFYGPKIEF---TLYDCL 70

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIE 330
               +     ++       G        A++   + +    V +    +G++     ++ 
Sbjct: 71  DRAWQCGTVQLDFSLPGRLG--------ASYVAENNERKVPVMLHRAVLGSLERFIGILT 122

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             + G    W        +++           D  +K+   L   G     D   E+IG 
Sbjct: 123 EEYAGFFPTWLAPQQVVVMNIT------DGQADYVQKLVKELQDAGIRAKADLRNEKIGF 176

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +     L   P  ++ G K V   KV ++ R       + + E          + 
Sbjct: 177 KIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSIDVNEFKEKLLQEIRSR 231


>gi|146084156|ref|XP_001464941.1| bifunctional aminoacyl-trna synthetase [Leishmania infantum JPCM5]
 gi|134069036|emb|CAM67181.1| putative bifunctional aminoacyl-tRNA synthetase [Leishmania
           infantum JPCM5]
          Length = 722

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 126/417 (30%), Gaps = 75/417 (17%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           +  MI  +   G Y   P        V   +  +  + G  +   P   S + L  E   
Sbjct: 235 KAEMIEYYDVSGCYIIRPWAYYVWKCVQRFLGGKIEKLGVEDCYFPMFVSRNCLEREKDH 294

Query: 86  YDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +    D  +       PT E VM   +   I+S+R+LP          R 
Sbjct: 295 IEGFAPEVAWVTRAGDTELEQPVAVRPTSETVMYPYYAKWIRSHRDLPVRLNMWNNVIRW 354

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E       +R+REFL                                             
Sbjct: 355 EFSHPTPFIRTREFL--------------------------------------------- 369

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                  E        E    C+K+ +D      +     +        +          
Sbjct: 370 -----WQEGHCAWAKAEE---CAKEVLDILECYASVYEQLLAVPVVRGRKTEKFAGGDYT 421

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG- 320
              E   +++        RG +       G  +       F+  +  +  +       G 
Sbjct: 422 TTVETFIEAVG-------RGCQGATSHNLGQNFGKMFDIRFQDPENNEQTLIPWQNSWGL 474

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKIYARLS 373
           + RV+  +I    D +G++ P  VA  ++ +I +        +A       C ++ + L 
Sbjct: 475 STRVIGVMIMVHGDNRGMVMPPRVASTQVIIIPVGITKDTTEEARQELLASCRRLESELC 534

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           + G     D       G +F   ++ G PL+V +G + +++  + +  R +G R  +
Sbjct: 535 EGGVRAKCDLRDNYSPGWRFNHWEVKGVPLRVELGPRELAERSLAVAVRHSGARHSV 591


>gi|156841840|ref|XP_001644291.1| hypothetical protein Kpol_1030p43 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114930|gb|EDO16433.1| hypothetical protein Kpol_1030p43 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 580

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 88/256 (34%), Positives = 133/256 (51%), Gaps = 6/256 (2%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVES 83
           LM   G+IH    G  +WLPLG ++L  +  +I  +  N  GA E+ + T+   DLW +S
Sbjct: 38  LMKHAGLIHGSRSGFINWLPLGLRSLRKLELLIHNKMQNEAGAYEVKLSTISPKDLWEKS 97

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
            R+++  KE+ +L D  D       T EE +T++  ++I SY+N+P T YQI  KFRDE 
Sbjct: 98  NRWNN--KELFKLKDSKDAQYCLTATCEEDITNLMMNYITSYKNMPITVYQIGNKFRDEK 155

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           RPR G++R+REFLMKDAYSF  +   +  ++N M   Y  +F  L +      A+SG IG
Sbjct: 156 RPRGGLLRAREFLMKDAYSFARSKAQAIEAFNNMNKVYDSLFTELKIPFKSAWADSGDIG 215

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           GDLS E+  +  +GE  +F      +     E  +   +       +     YA T D+ 
Sbjct: 216 GDLSKEYHYIHHSGEDTLFTCDHCNET-FNMEKCESHPLAPGEYTGD-LDVQYALTQDLS 273

Query: 264 NEKLFDSLPENKRVSA 279
               F   P+ K+ + 
Sbjct: 274 TLICFYY-PKGKQFNW 288



 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 14/313 (4%)

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
                   +          +     + E  P      + +  ++ A + DL+       Y
Sbjct: 222 YHYIHHSGEDTLFTCDHCNETFNMEKCESHPLAPGEYTGDLDVQYALTQDLSTLIC--FY 279

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                 +     +  L S             +  +F+   D  +  +      MD  I S
Sbjct: 280 YPKGKQFNWNLAKKELDSDINSISQILDNDKIISKFLENQD--DMMLAHVIRVMDIRINS 337

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                D  +   +     +    +  D  + +L  S  E +  S + IEVGH F+ GTKY
Sbjct: 338 NCNFPDFPLKKYAKNNFTSITDVSIIDAIDGELCGSCEEGQLKSDKSIEVGHTFHLGTKY 397

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP--DSVAPFKISLI 352
           +    AT+   + K   ++MG YGIG  R++ A+ E + D KG  WP   S     I   
Sbjct: 398 TESFGATYFDENSKPSLIEMGCYGIGVSRLIGAIAEITRDSKGFRWPSVISPYIVSICSQ 457

Query: 353 NIKAHDQVCRDACEKIYA------RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
              +H ++ ++  +++         L       F D  G  IG Q  ++ L+G P  VI+
Sbjct: 458 VNVSHKELNQERIDQVKDILYQSPILKNEIFSSFPDKTG--IGKQIELSQLIGIPFNVII 515

Query: 407 GSKFVSDSKVEIK 419
           GSK   + ++E++
Sbjct: 516 GSKSWPNVEIEVR 528


>gi|294056086|ref|YP_003549744.1| prolyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
 gi|293615419|gb|ADE55574.1| prolyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
          Length = 506

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 147/438 (33%), Gaps = 87/438 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +N+   +      TG      P       L  E+   + + KE   +
Sbjct: 38  GCMVIKPWGYAIWENIQRELDRRFKETGHKNAYFPLFIPMSFLQKEADHVEGFAKECAVV 97

Query: 97  ADRN---------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
                              ++ +I  PT E ++ ++F   ++SYR+LP    Q     R 
Sbjct: 98  THSRLEADEDGKLQPAGPLEEPLIVRPTSETIIGELFSKWVQSYRDLPLLINQWANVVRW 157

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E+R R  + R+ EFL ++                                   + A S  
Sbjct: 158 EMRTRLFL-RTAEFLWQEG--------------------------------HTVHATSEE 184

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
              +      V AD  E+ +                    I    +  E++    A  + 
Sbjct: 185 AMEETRKMLEVYADFAESYMA----------------MPVITGEKTEAERFPGADATFA- 227

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                      E      + ++ G   + G  ++      +  A+GK+ Y    S+G+ +
Sbjct: 228 ----------IEAMMQDRKALQAGTSHFLGQNFAKSSDIKYLSAEGKEEYAWTTSWGV-S 276

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKV--- 375
            R+V  +I +  D  G++ P  +AP  + +I +   ++      D C ++  +L      
Sbjct: 277 TRLVGGLIMTHSDDDGLVLPPRIAPSHVVIIPVTPKEETRQQVLDYCLELKQQLEAQSFL 336

Query: 376 --GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI--KHRLTGIREDMSL 431
                V +DD   + G +       G P++V VG + + +  V +  + R    ++ +  
Sbjct: 337 DGRVKVEFDDRDMRGGEKAWGWIKKGIPVRVEVGPRDMENGSVFVGRRDRAPKDKQGIPR 396

Query: 432 EEVINYASHRFSNNRPVL 449
           +E +N  S      +  L
Sbjct: 397 DEFVNGVSALLDEIQDNL 414


>gi|258512352|ref|YP_003185786.1| prolyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479078|gb|ACV59397.1| prolyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 483

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/410 (13%), Positives = 122/410 (29%), Gaps = 59/410 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G     P   +  +     +  E  RTG      P                +  E     
Sbjct: 40  GCIVIRPDAYEIWERCQRELDREFKRTGHRNAYFPL---------------FIPESFFEK 84

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           ++                                               +      + L 
Sbjct: 85  EKEHVE------------------------------------GFNPELPWVTEAGGDILE 108

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           +       +     H Y +   SY  +   L   +  +R E   +    + EF+      
Sbjct: 109 ERLAVRPTSETMFGHMYAQWIQSYRDLPLLLNQWANVVRWEKRTLPFLRTSEFLWQEGHT 168

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
                         +     DF +      ++     P    S+     +     E+   
Sbjct: 169 AHATEEEAREETMRMLGIYADFVESFLAIPVIRGQKTP----SEKFAGAVETYTIESLMK 224

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             R ++     Y G  ++      +   D +  YV   S+G+ + R++ A++    D +G
Sbjct: 225 DGRALQTATSHYLGQNFAKSFEIQYLDKDNQLKYVYTTSWGM-STRILGAIVMVHGDDRG 283

Query: 338 IIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
           ++ P  ++P ++ ++ I      +       +++  L +    V  DD  +   G +F  
Sbjct: 284 LVLPPKLSPTQVVIVPIGPAKAREAVVAKARELFDALKRADIRVHLDDRDDVSPGWKFNE 343

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +L G P+++ +G + +  S+  +  R TG +  + L+ VI       S+
Sbjct: 344 YELRGVPIRLELGPRDLEASQAVLARRDTGEKITVPLDAVIERVQALLSD 393


>gi|51102316|gb|AAT95871.1| prolyl-tRNA synthetase [Entamoeba invadens]
          Length = 458

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/428 (16%), Positives = 139/428 (32%), Gaps = 71/428 (16%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESG 84
           +R+ +I  +   G Y   P      +N+   I +   R G      P   S A L  E  
Sbjct: 5   VRSQLIEYYDISGCYILRPAAYGLWENIQQFIDKRIKRMGVENTYFPCFVSQAALKKEED 64

Query: 85  RYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E+  +       +       PT E VM   F++ I  +R+LP    Q     R
Sbjct: 65  ELNGFTPEVAWVTKSGSSDLQEPIALRPTSETVMYPAFKNWITGHRDLPLKVNQWCNVVR 124

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E    +  +R+REFL ++                             G  +   + +  
Sbjct: 125 WEFSHPYPFIRTREFLWQE-----------------------------GHTAYDNQPDCE 155

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAAT 259
                +   +  + +                   +      I    S  E +  A Y+ T
Sbjct: 156 KECRQILELYASVYE-------------------DLLAVPVIRGKKSKGETFPGAYYSLT 196

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            +                  R ++     + G  +S   +  ++    K  +V   S+G+
Sbjct: 197 VECIIPTNG-----------RSVQAATSHHLGQTFSKLFNIQYEDDSKKKQFVFQNSWGL 245

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVG 376
            + R +   + +  D KGII P   A  ++ ++ +    +++        ++   L    
Sbjct: 246 -STRSIGVTVMTHGDNKGIILPPRAAGKQVVIVPLHHKGSNNDEIDAKANELCELLLDND 304

Query: 377 CDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              F D       G +F   +L G PL++ +G +  +  KV I  R  G +E+   E ++
Sbjct: 305 IRAFADCNDMHNPGWKFTEYELRGIPLRIELGPRDFAGKKVVIVRRDNGAKEECLWENLV 364

Query: 436 NYASHRFS 443
                   
Sbjct: 365 ATIKKTID 372


>gi|270283990|ref|ZP_05965365.2| glycine--tRNA ligase [Bifidobacterium gallicum DSM 20093]
 gi|270277876|gb|EFA23730.1| glycine--tRNA ligase [Bifidobacterium gallicum DSM 20093]
          Length = 544

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 134/443 (30%), Gaps = 48/443 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +  + +WV SG    +     E L
Sbjct: 86  WDYGPLGVALKDNIKREWWRSMVVTRADVVGVDTSIILPSAVWVASGHVSVFNDPLVECL 145

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               RN +  +     E+    +  + +K                  E R    ++R+  
Sbjct: 146 TCHKRNREDKLVESYAEKHGDQLPENGLKDIVCPNCGTRGNWT----EPRDFNMMLRTNL 201

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--------- 205
             ++D  S       +       F + +       +K     A +G    +         
Sbjct: 202 GPVEDENSLHYLRPETAQGIFVDFKNVMTSSR---MKPPFGIANTGKSFRNEITPGNFIF 258

Query: 206 -------LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                  +  EF V     E       D             +++       E+       
Sbjct: 259 RTREFEQMEMEFFVAPGQDEDWHQYWIDARTQWYLDLGIKAENLRHYEHPKEKLAHYSKR 318

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGS 316
           T D+  +  F      +     G+     F       +S    A F  A G+     +  
Sbjct: 319 TVDIEYKFGFQGSDWGELE---GVANRTDFDLSAHAEHSGEDLAYFNQATGEKFIPYVIE 375

Query: 317 YGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRD 363
              G  R + A +  + D                      +AP+K +++ +    ++   
Sbjct: 376 PAAGLSRSLMAFLVDAFDVDEAPNTKGGVDKRTVLRLDPRLAPYKAAVLPLSKKPELQS- 434

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               + A L      V +D+ G  IG ++   D +G PL + V    + D  V I+ R T
Sbjct: 435 VAHNLAADLRLNDWMVDYDESGA-IGRRYRRQDEIGTPLCITVDFDTLEDQAVTIRERDT 493

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
             +E ++L+ V  Y   R  + R
Sbjct: 494 MQQERVALDNVAAYVRARIEDKR 516


>gi|25012603|gb|AAN71400.1| RE41560p [Drosophila melanogaster]
          Length = 998

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/422 (16%), Positives = 121/422 (28%), Gaps = 73/422 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y            +      E  R G  E   P   S   L  E      +  E+  
Sbjct: 529 SGCYILRQWSFAIWKAIKTWFDAEITRMGVKECYFPIFVSKAVLEKEKTHIADFAPEVAW 588

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D  +       PT E VM   +   ++SYR+LP    Q     R           
Sbjct: 589 VTKSGDSDLAEPIAVRPTSETVMYPAYAKWVQSYRDLPIRLNQWNNVVR----------- 637

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF                         +LR    L  +     A+      + + E +
Sbjct: 638 -WEFKQPT--------------------PFLRTREFLWQEGHTAFADKE----EAAKEVL 672

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            + D     +  +       +    T+ +               Y  T +          
Sbjct: 673 DILD--LYALVYTHLLAIPVVKGRKTEKEKFA---------GGDYTTTVEAFISA----- 716

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 S R I+     + G  +S      ++  + +       +      R +  +I  
Sbjct: 717 ------SGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVYQNSWGITTRTIGVMIMV 770

Query: 332 SHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYARLSKVGCDVFWDDM 384
             D +G++ P  VA  +  ++     +   D       DAC+ +  RL   G     D  
Sbjct: 771 HADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKALEKRLVGGGVRCEGDYR 830

Query: 385 GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRF 442
                G +F   +L G PL++ VG K +   + V ++ R T  +  + L +V        
Sbjct: 831 DNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVR-RDTVEKITIPLADVEKKIPALL 889

Query: 443 SN 444
             
Sbjct: 890 ET 891


>gi|24649468|ref|NP_732925.1| Glutamyl-prolyl-tRNA synthetase, isoform B [Drosophila
           melanogaster]
 gi|23172101|gb|AAN13964.1| Glutamyl-prolyl-tRNA synthetase, isoform B [Drosophila
           melanogaster]
          Length = 996

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/422 (16%), Positives = 121/422 (28%), Gaps = 73/422 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y            +      E  R G  E   P   S   L  E      +  E+  
Sbjct: 527 SGCYILRQWSFAIWKAIKTWFDAEITRMGVKECYFPIFVSKAVLEKEKTHIADFAPEVAW 586

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D  +       PT E VM   +   ++SYR+LP    Q     R           
Sbjct: 587 VTKSGDSDLAEPIAVRPTSETVMYPAYAKWVQSYRDLPIRLNQWNNVVR----------- 635

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF                         +LR    L  +     A+      + + E +
Sbjct: 636 -WEFKQPT--------------------PFLRTREFLWQEGHTAFADKE----EAAKEVL 670

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            + D     +  +       +    T+ +               Y  T +          
Sbjct: 671 DILD--LYALVYTHLLAIPVVKGRKTEKEKFA---------GGDYTTTVEAFISA----- 714

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 S R I+     + G  +S      ++  + +       +      R +  +I  
Sbjct: 715 ------SGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVYQNSWGITTRTIGVMIMV 768

Query: 332 SHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYARLSKVGCDVFWDDM 384
             D +G++ P  VA  +  ++     +   D       DAC+ +  RL   G     D  
Sbjct: 769 HADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKALEKRLVGGGVRCEGDYR 828

Query: 385 GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRF 442
                G +F   +L G PL++ VG K +   + V ++ R T  +  + L +V        
Sbjct: 829 DNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVR-RDTVEKITIPLADVEKKIPALL 887

Query: 443 SN 444
             
Sbjct: 888 ET 889


>gi|24649466|ref|NP_524471.2| Glutamyl-prolyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|44888996|sp|P28668|SYEP_DROME RecName: Full=Bifunctional aminoacyl-tRNA synthetase; Includes:
            RecName: Full=Glutamyl-tRNA synthetase; AltName:
            Full=Glutamate--tRNA ligase; Short=GluRS; Includes:
            RecName: Full=Prolyl-tRNA synthetase; AltName:
            Full=Proline--tRNA ligase; Short=ProRS
 gi|7301076|gb|AAF56211.1| Glutamyl-prolyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|16198227|gb|AAL13932.1| LD42739p [Drosophila melanogaster]
          Length = 1714

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/422 (16%), Positives = 121/422 (28%), Gaps = 73/422 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
             G Y            +      E  R G  E   P   S   L  E      +  E+  
Sbjct: 1245 SGCYILRQWSFAIWKAIKTWFDAEITRMGVKECYFPIFVSKAVLEKEKTHIADFAPEVAW 1304

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    D  +       PT E VM   +   ++SYR+LP    Q     R           
Sbjct: 1305 VTKSGDSDLAEPIAVRPTSETVMYPAYAKWVQSYRDLPIRLNQWNNVVR----------- 1353

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
              EF                         +LR    L  +     A+      + + E +
Sbjct: 1354 -WEFKQPT--------------------PFLRTREFLWQEGHTAFADKE----EAAKEVL 1388

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             + D     +  +       +    T+ +               Y  T +          
Sbjct: 1389 DILD--LYALVYTHLLAIPVVKGRKTEKEKFA---------GGDYTTTVEAFISA----- 1432

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                  S R I+     + G  +S      ++  + +       +      R +  +I  
Sbjct: 1433 ------SGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVYQNSWGITTRTIGVMIMV 1486

Query: 332  SHDGKGIIWPDSVAPFKISLIN----IKAHDQV---CRDACEKIYARLSKVGCDVFWDDM 384
              D +G++ P  VA  +  ++     +   D       DAC+ +  RL   G     D  
Sbjct: 1487 HADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKALEKRLVGGGVRCEGDYR 1546

Query: 385  GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRF 442
                 G +F   +L G PL++ VG K +   + V ++ R T  +  + L +V        
Sbjct: 1547 DNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVR-RDTVEKITIPLADVEKKIPALL 1605

Query: 443  SN 444
              
Sbjct: 1606 ET 1607


>gi|296187244|ref|ZP_06855640.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296048115|gb|EFG87553.1| prolyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 556

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 90/214 (42%), Gaps = 6/214 (2%)

Query: 217 GETQVFCSKDFMDFPIPSENTDF---DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           G   + C    +D  I          +D       V           D       D  P 
Sbjct: 324 GPINLKCDTLLVDEEITRMRNFMVGANDTGYHYECVNYERDFTGTVGDFKKITEKDKCPV 383

Query: 274 NKRVSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                     +G   I    T YS  M+A F    GK   + + +  I   R++A ++E 
Sbjct: 384 CGNSINIENAMGLGQIMNLKTTYSENMNAVFLDKLGKSKPMSIINASINIDRLLALIVEQ 443

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           +HD  GI+WP SVAP+++ +I     ++      E IY +L  +G DV  DD  E+ G +
Sbjct: 444 NHDKNGIVWPKSVAPYEVIVIAAVFKNEEQMKTAENIYNKLKSLGIDVLLDDRDERAGVK 503

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           F  ADL+G P+++ VG + +SD KVE K R    
Sbjct: 504 FKDADLIGAPIRITVGKR-ISDGKVEFKLRNNDN 536



 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 121/241 (50%), Gaps = 5/241 (2%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  L  L+E P + E+ S+KLM+R G+I + + GIY+++P  +K + NVN +I+ E
Sbjct: 1   MKLSKMILGTLREAPGETELESYKLMVRAGIIRKVASGIYNFMPTRKKVIGNVNNLIKNE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +  + E+ V      +L  +    +S   +     D+++K    G   +E   +I ++
Sbjct: 61  MEKIDSQEIEVSQFVPFELLNQCNNKESSLTDTFETVDKSEKKFYVGADFKEPYIEIVKN 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            IKSY+ LP + Y IQ + +DE +P+FG+++S+EF     Y F      S    N +   
Sbjct: 121 EIKSYKQLPVSIYSIQKQIKDEPKPKFGIIKSKEFNELQCYVFHDDLTESSQYINSLCEV 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +  I+H+  + SI   +    I   L  E +V  ++        K+ ++    +  T+ +
Sbjct: 181 FNSIYHKCRIDSIKTNSLRFFIKHPLGEEHVVCCESC-----GYKEDLEIATCTLQTEEE 235

Query: 241 D 241
           D
Sbjct: 236 D 236


>gi|326335459|ref|ZP_08201646.1| proline--tRNA ligase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692225|gb|EGD34177.1| proline--tRNA ligase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 492

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/426 (14%), Positives = 136/426 (31%), Gaps = 46/426 (10%)

Query: 24  KLMLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           +L+++ G+       G     P G    + +  I+ +    TG      P       +  
Sbjct: 18  ELVVKAGLAENSGVRGCMVIKPYGYAIWERMKDILDKMFKETGHQNAYFPIFIPKSYFEA 77

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
                              +        +E                       + K  +E
Sbjct: 78  -------------------EEKNAEGFAKECAVVTHYRLKTDPSQKGKLIVDPEAKLEEE 118

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           L  R                   +     ++Y     SY  +   +   +  +R E    
Sbjct: 119 LIVRP-----------------TSEAIIWNTYKNWIQSYRDLPILINQWANVVRWEMRTR 161

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               + EF+     G T     ++ ++      N  +   +     V             
Sbjct: 162 LFLRTAEFL--WQEGHTAHATREEAIEEA-QKMNEVYATFVEQYMGVPVIRGRKTEAERF 218

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                     E      + ++ G   + G  ++      +   +G   YV   S+G  + 
Sbjct: 219 AGADDT-YCIEALMQDGKALQAGTSHFLGQNFAKAFEVKYANKEGVLDYVWASSWGS-ST 276

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI---YARLSKVGCDV 379
           R++ A+I S  D  G++ P  +AP ++ ++ I   ++  +   ++I      L K    V
Sbjct: 277 RLMGALIMSHSDDNGLVLPPLLAPIQVVIVPIYKGEEQLQSIRQRITPLMQALKKHEITV 336

Query: 380 FWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +DD   ++ G +F   +L G P+++ VG + + ++  E+  R T  +E +S E ++ + 
Sbjct: 337 KFDDDDTQKPGFKFHEYELKGVPIRLAVGQRDLENNTYEVARRDTLTKESISGERIVEHI 396

Query: 439 SHRFSN 444
               ++
Sbjct: 397 ESLLTD 402


>gi|86742942|ref|YP_483342.1| prolyl-tRNA synthetase [Frankia sp. CcI3]
 gi|114152196|sp|Q2J529|SYP_FRASC RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|86569804|gb|ABD13613.1| prolyl-tRNA synthetase [Frankia sp. CcI3]
          Length = 468

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/397 (15%), Positives = 118/397 (29%), Gaps = 59/397 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + + A +       GA+    P       L  E+   + +  E+  +     K
Sbjct: 38  PYGYAIWERMQAEVDSRIKAAGAVNAYFPLFIPESYLRREAEHVEGFSPELAVVTIGGGK 97

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 98  ELEEPVVVRP-------------------------------------------------- 107

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +         K   SY  +   L   +  +R E  P     S EF+     G T   
Sbjct: 108 --TSETVIGEYLAKWTQSYRDLPLLLNQWANVVRWELRPRLFLRSSEFL--WQEGHTAHA 163

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              D   +        + D ++    V  +                 +  E      + +
Sbjct: 164 DEADAAAYARRIALEVYRDFMTQVLAVPVFVGVKTRRERFAGATNTMTC-EGMMGDGKAL 222

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++      G  ++      F GADG  H     S+G  + R+V  +I +  D  G+  P 
Sbjct: 223 QMATSHELGQNFARAFDIDFLGADGARHLAWTTSWGC-STRMVGGLIMAHGDDNGLRVPP 281

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFP 401
            +AP ++ ++ ++  ++       +I A L+  G  V  D   G   G +   A++ G P
Sbjct: 282 RLAPTQVVVLPVRD-EETVVAKARQIAAALTDAGLRVQVDARPGLSFGRRVTDAEIKGIP 340

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           ++V VG + ++   V +  R T  +  + L EV    
Sbjct: 341 VRVEVGPRDLAAGNVTLVRRDTSEKVPVPLAEVATRV 377


>gi|149246389|ref|XP_001527664.1| prolyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146447618|gb|EDK42006.1| prolyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 557

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 133/259 (51%), Gaps = 12/259 (4%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           R  K +   L +   D ++ +H+L+ + G+I     G+  W   G    D +N I+RE  
Sbjct: 4   RVPKLYCHQLGKFKTDIQVPTHELLAKLGIISYPHSGLVHWGKTGLLIQDKINGIVRENL 63

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+ +  L   +LW+++GR+     ++ +L    +   +  PT EE +T+  +  
Sbjct: 64  DHLGYEELKLSLLSHKNLWLQTGRWH--QPDLFKLQ---NDEYLLAPTAEEEITEYVKRS 118

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           I+SY++LP  +YQI  KFR E RPR G++R REFLMKDAYSFD+    +  +Y  M  +Y
Sbjct: 119 IQSYKHLPVGYYQINEKFRAEKRPRGGLLRGREFLMKDAYSFDIDETSALKTYESMVNAY 178

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD-------FPIPS 234
             IF  +G+  +  +A+SG IGGDLSHE+ +L   GE  VF                 P+
Sbjct: 179 HNIFREIGVPYVKAQADSGDIGGDLSHEWHLLNQNGEDTVFTCDSCGHTSNVEKTIAYPT 238

Query: 235 ENTDFDDIISLNSIVEQWT 253
           E    +        V+ +T
Sbjct: 239 EEEIKNSKGGEEVAVKYFT 257



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 15/160 (9%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD------HYVQMGSYGI 319
           ++     E     +  IE+GH FY G KYS P++ T +     +       +V+MG YGI
Sbjct: 355 EVCGECEEGHLQESNAIEIGHTFYLGEKYSKPLNLTVEVPTNDNGNTLESRFVKMGCYGI 414

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R++AAV E + D +G+ WP S          I   D    +A E   ++L +   D 
Sbjct: 415 GISRIIAAVAEINRDDRGLRWPAS---IAPWEATIITDDASKVEAVE---SQLMQ--IDC 466

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             D   E+ G +F  +  +G PL +++G K     ++EI+
Sbjct: 467 RLDGRDERFGYKFKASTTMGIPLIIVLG-KSFPHVEIEIR 505


>gi|224023751|ref|ZP_03642117.1| hypothetical protein BACCOPRO_00467 [Bacteroides coprophilus DSM
           18228]
 gi|224016973|gb|EEF74985.1| hypothetical protein BACCOPRO_00467 [Bacteroides coprophilus DSM
           18228]
          Length = 285

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 96/311 (30%), Gaps = 35/311 (11%)

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R E      G+ R R F   DA+ F    +     + ++      +F  +  ++   
Sbjct: 2   TVCRYEQSGELHGLTRVRSFTQDDAHIFCRPDQVKDE-FLRVMDIISIVFKSMNFENFEA 60

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE-QWTA 254
           +                  D    + +   D           +  +   L + VE    A
Sbjct: 61  QISLR--------------DKVNREKYIGSDENWEKAEQAIIEACEEKGLPAKVEYGEAA 106

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-Q 313
            Y    D     + D++    ++    ++                  + G+D + H    
Sbjct: 107 FYGPKLDFM---VKDAIGRRWQLGTIQVDYNLP--------ERFQLEYMGSDNQKHRPVM 155

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +     G+M    AV+     GK  +W           + I    +   +  + +   L 
Sbjct: 156 IHRAPFGSMERFVAVLIEHTAGKFPLW------LTPDQVAILPVSEKYNEYADHVRLELK 209

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           K       DD  E+IG +    ++   P  +IVG K   + +V ++ +  G +  M +E+
Sbjct: 210 KNDIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENEEVSVRKQGEGDQGTMKIED 269

Query: 434 VINYASHRFSN 444
                +    N
Sbjct: 270 FAKNIAEEVHN 280


>gi|255027702|ref|ZP_05299688.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J2-003]
          Length = 204

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 79/219 (36%), Gaps = 15/219 (6%)

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             +       +  D++       E   A Y    DV   ++  ++ + + +S   ++   
Sbjct: 1   MWEKAQAMLKSAMDEMEMDYFEAEGEAAFYGPKLDV---QVKTAIGKEETLSTVQLD--- 54

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            F    ++      T+ G DG+ H   +     G +  +   +    +     +P  +AP
Sbjct: 55  -FLLPERFD----LTYIGEDGEKHRPVVIHR--GVVSTMERFVAYLIEEYKGAFPTWLAP 107

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            ++ +I + A      D  + +  +L + G     DD  E++G +   A     P  +++
Sbjct: 108 VQMEIIPVNA--DAHLDYAKGVQDKLQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVL 165

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G + V    V ++   +   E M L+  I       S  
Sbjct: 166 GDQEVEAGSVNVRRYGSKDSETMDLDAFIAQVVAEVSKY 204


>gi|83814638|ref|YP_446639.1| prolyl-tRNA synthetase [Salinibacter ruber DSM 13855]
 gi|83756032|gb|ABC44145.1| prolyl-tRNA synthetase [Salinibacter ruber DSM 13855]
          Length = 527

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/430 (15%), Positives = 143/430 (33%), Gaps = 51/430 (11%)

Query: 27  LRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ES 83
           +R G + ++S   G     P G    +N+   + +    TG      P          E+
Sbjct: 57  VRNGQLAENSPARGCMIIKPNGMALWENMRDQLDQMFKDTGHQNYYFPLFIPERYMEREA 116

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
              + + KE   +          G    +  +++  ++I                     
Sbjct: 117 EHVEGFAKECAVVTHSRLTQDEEGDLVPDPESELGENYIV-------------------- 156

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
                                 +      +Y+K   SY  +       +  +R E  P  
Sbjct: 157 -------------------RPTSETIIWDTYSKWIQSYRDLPLLYNQWANVVRWEMRPRL 197

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
              + EF+     G T      + ++      +            +         +    
Sbjct: 198 FLRTAEFL--WQEGHTAHATETEAVEEAERMLDVYTT-FAEEYMAMPVLQGRKTESERFP 254

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +     E      + ++ G   + G  ++     TF   D ++ YV   S+G+ + R
Sbjct: 255 G-AVDTYCIEAMMQDGKALQAGTSHFLGQNFAKAFDCTFTNEDNEEEYVWATSWGV-STR 312

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVF 380
           ++  +I +  D +G++ P  +AP ++ ++ +   D       + CE++  RL   G  V 
Sbjct: 313 LIGGLIMTHSDDQGLVLPPKLAPHQVVIVPLFFDDDQEGPVMETCERLQERLEDHGIRVK 372

Query: 381 WD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            D +  +  G +F+  +L G PL++ +G + + +  VE+  R T  +E +  + +    S
Sbjct: 373 MDQNHTQSPGWRFSEHELRGVPLRLAIGPRDLENDNVEMARRDTQEKEVVPQDGIAERVS 432

Query: 440 HRFSNNRPVL 449
               + +  L
Sbjct: 433 DTLDDIQHAL 442


>gi|56971485|gb|AAH88324.1| Eprs protein [Rattus norvegicus]
          Length = 503

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/423 (13%), Positives = 107/423 (25%), Gaps = 74/423 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
            G Y   P      +++      E  + G      P   S   L  E      +  E+  
Sbjct: 35  SGCYILRPWSYSIWESIKDFFDAEIKKLGVENCYFPIFVSQGALEKEKNHIADFAPEVAW 94

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   +   ++S+R+LP    Q     R           
Sbjct: 95  VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVR----------- 143

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF                                   K       +        H   
Sbjct: 144 -WEF-----------------------------------KHPQPFLRTREFLWQEGHSAF 167

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +    +V    +                       +     Y  T +          
Sbjct: 168 ATFEEAADEVLQILELYARVYEELLAIPVVRGRKTEKEKFAGGDYTTTLEAFISA----- 222

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIE 330
                 S R I+     + G  +S      F+                G   R +  +I 
Sbjct: 223 ------SGRAIQGATSHHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGLTTRTIGVMIM 276

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHD-------QVCRDACEKIYARLSKVGCDVFWDD 383
              D  G++ P  VA  ++ +I     +       +     C +   RL         D 
Sbjct: 277 VHGDNMGLVLPPRVASVQVVVIPCGITNTLSEEDREALMAKCNEYRRRLLGADIRARVDL 336

Query: 384 MGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHR 441
                 G +F   +L G P+++ VG + +     V ++ R TG +  ++ +E  +     
Sbjct: 337 RDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVR-RDTGEKLTIAEKEAESKLKGV 395

Query: 442 FSN 444
             +
Sbjct: 396 LED 398


>gi|315223470|ref|ZP_07865327.1| proline--tRNA ligase [Capnocytophaga ochracea F0287]
 gi|314946643|gb|EFS98634.1| proline--tRNA ligase [Capnocytophaga ochracea F0287]
          Length = 492

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/411 (14%), Positives = 125/411 (30%), Gaps = 45/411 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G     P G    + + A +      TG      P       +      +    E     
Sbjct: 33  GCMVIKPYGYAIWEKMQAELDRMFKETGHTNAYFPLFVPKSYFEA----EEKNAEGFAKE 88

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
                         E    +     K    L                             
Sbjct: 89  CAVVTHYRLKADPNEKGKLMVDPEAKLEEELIVRPT------------------------ 124

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                   +     ++Y     SY  +   +   +  +R E        + EF+     G
Sbjct: 125 --------SEAIIWNTYKNWIQSYRDLPILINQWANVVRWEMRTRLFLRTAEFL--WQEG 174

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            T     ++ ++      N   D +   N +         + S+           E    
Sbjct: 175 HTAHATKEEAIEEAQKMMNVYADFV--ENFMAVPVIKGVKSESERFAGADDTYCIEALMQ 232

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + ++ G   + G  ++      +   +GK  YV   S+G+ + R++ A+I +  D  G
Sbjct: 233 DGKALQAGTSHFLGQNFAKAFDVKYVSKEGKQEYVWASSWGV-STRLMGALIMTHSDDNG 291

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDVFWDDMG-EQIGSQFA 393
           ++ P  +AP ++ ++ I    +         + +   L K    V +DD   +  G +F 
Sbjct: 292 LVLPPKLAPIQVVIVPIYKGAEQLEKVHSHIQPLIEELKKHNISVKFDDRDTQSPGFKFH 351

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             +L G P+++ VG + +  +  E+  R T  +E ++  +++ +      +
Sbjct: 352 EYELKGIPVRLAVGQRDIEHNTFEVARRDTLTKETVAGGQIVAHIQQLLED 402


>gi|207092594|ref|ZP_03240381.1| prolyl-tRNA synthetase [Helicobacter pylori HPKX_438_AG0C1]
          Length = 372

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 2/173 (1%)

Query: 260 SDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   K  D  P    +    + +EVGHIF  G  Y+  + A+F   +GK+ + +MG Y
Sbjct: 185 ADIVQVKESDRCPNCQGELKYHKSLEVGHIFKLGQGYAKSLKASFLDKNGKERFFEMGCY 244

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R+++A++E   D  G +W  + APF + ++     D+  +    ++Y RL + G 
Sbjct: 245 GIGISRLLSAILEQKSDDLGCVWTKNTAPFDVVIVVSNWKDEAQKKLAFEVYERLLQKGV 304

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           D   DD   + G++    +L+G  L +IVG + +   + E   R    ++ + 
Sbjct: 305 DALLDDRDARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQTLK 357


>gi|315502429|ref|YP_004081316.1| prolyl-tRNA synthetase [Micromonospora sp. L5]
 gi|315409048|gb|ADU07165.1| prolyl-tRNA synthetase [Micromonospora sp. L5]
          Length = 468

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/408 (13%), Positives = 123/408 (30%), Gaps = 59/408 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDK 102
           P G    + + A +       GA     P          E+   + +  E+  +     K
Sbjct: 39  PAGYAIWERMQAEMDARIKAAGAENAYFPLFIPESYLKREAEHVEGFSPELAVVTHGGGK 98

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 99  QLAEPVVVRP-------------------------------------------------- 108

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +         K   SY  +   L   +  +R E  P     + EF+     G T   
Sbjct: 109 --TSETVIGEFMAKWIDSYRDLPLLLNQWANVVRWELRPRIFLRTSEFL--WQEGHTAHA 164

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             +D   +     +  ++D++     +        A           +  E      + +
Sbjct: 165 TREDARAYARRILHEAYEDLMVNVLGIPVVVGLKTARERFAGATATYTC-EGMMGDGKAL 223

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++G     G  ++     ++  A+G   +    S+G  + R++  +I    D  G+  P 
Sbjct: 224 QLGTSHELGQNFAKAFDISYSSAEGGREHAWTTSWGT-STRMLGGLIMCHGDDNGLRVPP 282

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFP 401
            +AP +  ++ +K   +   +A  K++  L   G  V  DD  +   G +   A+L G+P
Sbjct: 283 KLAPVQAYVMIVKDG-EGVGEAARKLHDALRDAGVRVALDDRTDTAFGRRAVDAELRGYP 341

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++V VG + ++     +  R  G +    + +V+        +++  L
Sbjct: 342 VRVEVGPRDLAAGNAVVVRRTDGSKAPTPVADVVGAVLAALEDDQQAL 389


>gi|145251301|ref|XP_001397164.1| prolyl-tRNA synthetase YHR020W [Aspergillus niger CBS 513.88]
 gi|134082695|emb|CAK42588.1| unnamed protein product [Aspergillus niger]
          Length = 604

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 137/441 (31%), Gaps = 92/441 (20%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
            G +   P      + +         + G    S P   S D+   E    + +  E+  
Sbjct: 118 SGCFILKPASYFIWEEIQQWFNSYIKKMGVKNCSFPLFVSEDVLQREKDHIEGFAAEVAW 177

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 178 VTHAGSTPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLR 237

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT EG+      +   Y RI+                          
Sbjct: 238 TREFLWQEGHTAHLTKEGAHEEVMTILDLYARIYE------------------------- 272

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      +    +  E++    Y  T + +       
Sbjct: 273 -----------------------ELLAVPVVKGQKTEKEKFAGGLYTTTVEGYIPA---- 305

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--------ADGKDHYVQMGSYGIGAM 322
                  + RGI+ G     G  +S     T +               +V   S+G+ + 
Sbjct: 306 -------TGRGIQGGTSHGLGQNFSKMFGITVEDPTAKSDDKEKAAPLHVWQNSWGL-ST 357

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------LSKV 375
           R +  ++    D +G++ P  VA  +  ++ +    +   +  +K+Y         L + 
Sbjct: 358 RTLGVMVMIHSDNRGLVLPPRVADTQTIIVPVGITAKTTDEERKKLYDEVDRLVSTLREA 417

Query: 376 GCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMSL 431
           G     D   G   G +F   +L G PL++  G   ++   V    R       +  + +
Sbjct: 418 GVRAESDLREGYSPGWKFNEWELRGVPLRLEFGPGELAGGFVTAARRDVPGKDGKAPIQI 477

Query: 432 EE-------VINYASHRFSNN 445
            E       ++        N 
Sbjct: 478 SELTTAVPALLETIQKDLYNR 498


>gi|293363544|ref|ZP_06610300.1| proline--tRNA ligase [Mycoplasma alligatoris A21JP2]
 gi|292552893|gb|EFF41647.1| proline--tRNA ligase [Mycoplasma alligatoris A21JP2]
          Length = 478

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 134/416 (32%), Gaps = 70/416 (16%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEML 94
           +KG   + P      + +   + E     G   + +P L    L+  E    + +  E+ 
Sbjct: 33  AKGTLVFKPNSYGIWELIQQNLNEIFKERGVNNVYLPLLIPESLFSLEKDHIEGFNPELA 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            +                                                         +
Sbjct: 93  TVTHV----------------------------------------------------GNK 100

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            L +  Y    +       +     SY  +       +  +R E        S EF+   
Sbjct: 101 ELQEKYYIRPTSEVLFADLFKNSIDSYNDLPLVYNQWANVVRWEKTTNPFLRSREFLWQ- 159

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSL-- 271
                         D PI +       I +    ++ + A P         EK   +   
Sbjct: 160 -------EGHTCHAD-PIEARKLTRCMISTYAKFLKNFLAIPTIVGKKTPYEKFAGACST 211

Query: 272 --PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E      R ++ G   Y    +S P S  FK  + +   V   S+G+ + R++ A+I
Sbjct: 212 YTVEAMMKDGRALQAGTSHYLAQNFSKPYSIVFKNKNNELENVYQTSWGV-STRLIGALI 270

Query: 330 ESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +  D +GII P  VAP +I LI +  A     ++  +K+Y  L +    V  D   +Q 
Sbjct: 271 MTHGDNRGIIIPPRVAPIQIDLIELFGAKSAKVKEVSQKLYELLRRKW-RVRVDASDKQP 329

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G + A +++ G PL++ +G + + +  V I  R T  +  ++  +V      +  +
Sbjct: 330 GFKAANSEIQGVPLRIEIGPRDLENDMVTIVRRDTLEKTLVNYNDVKKIIQKKLDD 385


>gi|302865885|ref|YP_003834522.1| prolyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|302568744|gb|ADL44946.1| prolyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
          Length = 468

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/408 (13%), Positives = 122/408 (29%), Gaps = 59/408 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDK 102
           P G    + + A +       GA     P          E+   + +  E+  +     K
Sbjct: 39  PAGYAIWERMQAEMDARIKAAGAENAYFPLFIPESYLKREAEHVEGFSPELAVVTHGGGK 98

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 99  QLAEPVVVRP-------------------------------------------------- 108

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +         K   SY  +   L   +  +R E  P     + EF+     G T   
Sbjct: 109 --TSETVIGEFMAKWIDSYRDLPLLLNQWANVVRWELRPRIFLRTSEFL--WQEGHTAHA 164

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             +D   +     +  ++D++     +        A           +  E      + +
Sbjct: 165 TREDARAYARRILHEAYEDLMVNVLGIPVVVGLKTARERFAGATATYTC-EGMMGDGKAL 223

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++G     G  ++     ++  A+G   +    S+G  + R++  +I    D  G+  P 
Sbjct: 224 QLGTSHELGQNFAKAFDISYSSAEGGREHAWTTSWGT-STRMLGGLIMCHGDDNGLRVPP 282

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFP 401
            +AP +  ++ +K   +   +A  K++  L   G  V  DD  +   G +   A+L G+P
Sbjct: 283 KLAPVQAYVMIVKDG-EGVAEAARKLHDALRDAGVRVALDDRTDTAFGRRAVDAELRGYP 341

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++V VG + ++     +  R  G +    + +V+         ++  L
Sbjct: 342 VRVEVGPRDLAAGNAVVVRRTDGSKAPTPVADVVGAVLAALEADQQAL 389


>gi|116180206|ref|XP_001219952.1| hypothetical protein CHGG_00731 [Chaetomium globosum CBS 148.51]
 gi|88185028|gb|EAQ92496.1| hypothetical protein CHGG_00731 [Chaetomium globosum CBS 148.51]
          Length = 562

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 82/233 (35%), Positives = 123/233 (52%), Gaps = 12/233 (5%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           H  ++R G + Q + G++  LPLG +  D V  ++          E+         LW +
Sbjct: 28  HAKLIRAGFLRQSNAGMFHMLPLGNRVQDKVERLVASRM-----EELL------ESLWEK 76

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           SGR D+   E+ R +DR D   +  PTHEE +T +    +KSY+ LP   YQI  K+RDE
Sbjct: 77  SGRLDNVASELFRFSDRRDVPYLLAPTHEEEITTLAARSVKSYKELPLRLYQITRKYRDE 136

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            RPR G++R REF+MKD Y+FD + + +  +YN +  +Y +IF  + L  +  +A SG +
Sbjct: 137 FRPRHGLLRGREFIMKDLYTFDSSVDSALETYNDVRAAYNQIFSDMKLPVLSAKASSGDM 196

Query: 203 GGDLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           GGDLSHE+ +    GE +V  CS           NT   D ++ +S  E W  
Sbjct: 197 GGDLSHEYHLPTPLGEDRVISCSSCNYVVNEEVANTAISDEVATDSPFEIWRG 249



 Score = 96.7 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 91/183 (49%), Gaps = 14/183 (7%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-KGADGKDHYVQMGSYGIGAMRVVA 326
            +         +R +E+GH F+ GT+YS P+ A        +   +QMG YGIG  R++ 
Sbjct: 381 CNQCSSGHLQVSRAMELGHTFFLGTRYSQPLHAMATIPPATQPTPLQMGCYGIGISRIIG 440

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC--------D 378
           A  E   D  G+ WP ++AP+   +I  K  D+       ++Y ++   G         D
Sbjct: 441 AAAEHLADQTGLNWPAAIAPYSCVVIPGKDADEGD---AVQVYQQIE--GIVGPERRLVD 495

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  + +  + A ADL+GFP+ V++G ++ +  +VE++ R  G+++ + + ++    
Sbjct: 496 VVLDDRAKSLPWKMADADLIGFPVIVLLGREWRAARRVEVQCRRLGVKQAVEIADLPVVV 555

Query: 439 SHR 441
           +  
Sbjct: 556 AKL 558


>gi|295111084|emb|CBL27834.1| prolyl-tRNA synthetase [Synergistetes bacterium SGP1]
          Length = 479

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 84/455 (18%), Positives = 165/455 (36%), Gaps = 89/455 (19%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++L +++     AE+A +   +R  M+ +         P G    +NV     +   
Sbjct: 12  YSQWYLDVIKA----AELADYA-PVRGCMVIR---------PTGYSIWENVQRYFDDAFK 57

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDI 117
           RTG +    P L     L  E+   + +  E   +     +         PT E V+  +
Sbjct: 58  RTGHVNAYFPLLIPNSFLQKEAEHVEGFAPECAMVTHAGGEELEEPFAVRPTSETVIGHM 117

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           +   I+S+R+LP    Q     R E RPR   +R+ EFL ++ ++   T + ++    +M
Sbjct: 118 YSRWIQSWRDLPVLINQWCNVMRWEKRPRL-FLRTSEFLWQEGHTAHATEQEAREETLRM 176

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                                     +V+      +  +P    
Sbjct: 177 L-----------------------------------------EVYRKVMEEELALPV--- 192

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
               I    +  E++    A  +            E     A+ ++ G   + G  ++  
Sbjct: 193 ----ITGEKTAGERFPGAVATYT-----------CEAMMSDAKALQAGTSHFLGQNFARA 237

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               F+  DG+       S+GI + R++ A+I +  D  G++ P  +AP K+ L+ I + 
Sbjct: 238 FEIRFQDRDGELATCWTTSWGI-STRLIGAIIMTHSDDDGLVLPPHIAPVKVVLLPI-SK 295

Query: 358 DQVCRD-----ACEKIYARLSKV--GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSK 409
           D+   +        ++  +L +   G     D     + G +F      G PL++ +G K
Sbjct: 296 DERQAEGVLLPMARELSGQLDEALGGLYTAVDTQFHMRPGDRFFTHLQRGVPLRLELGEK 355

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            V    V +  R TG + D+S + ++        +
Sbjct: 356 DVQSGTVRVVRRDTGEKADLSRDALVPAVQKLLED 390


>gi|218288750|ref|ZP_03493013.1| prolyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
 gi|218241108|gb|EED08284.1| prolyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
          Length = 483

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/410 (13%), Positives = 120/410 (29%), Gaps = 59/410 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G     P   +  +     +  E  RTG      P                +  E     
Sbjct: 40  GCIVIRPDAYEIWERCQRELDREFKRTGHRNAYFPL---------------FIPESFFEK 84

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           ++                                               +      + L 
Sbjct: 85  EKEHVE------------------------------------GFNPELPWVTEAGGDILE 108

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           +       +     H Y +   SY  +   L   +  +R E   +    + EF+      
Sbjct: 109 ERLAVRPTSETMFGHMYAQWIQSYRDLPLLLNQWANVVRWEKRTLPFLRTSEFLWQEGHT 168

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
                         +     DF +      ++     P    S+     +     E+   
Sbjct: 169 AHATEEEAREETMRMLGIYADFVESFLAIPVIRGQKTP----SEKFAGAVDTYTIESLMK 224

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             R ++     Y G  ++      +   D +  YV   S+G+ + R++ A++    D +G
Sbjct: 225 DGRALQTATSHYLGQNFAKSFEIQYLDKDNQLKYVYTTSWGM-STRILGAIVMVHGDDRG 283

Query: 338 IIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
           ++ P  +AP ++ ++ I      +        +   L +    V  DD  +   G +F  
Sbjct: 284 LVLPPKLAPTQVVVVPIGPAKAREAVVAKARDLAEALRRADIRVHLDDRDDVSPGWKFNE 343

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +L G P+++ +G + +  S+  +  R TG +  + L+ VI       S+
Sbjct: 344 YELRGVPIRLELGPRDLEASQAVLARRDTGEKITVPLDGVIERVQALLSD 393


>gi|87311204|ref|ZP_01093327.1| prolyl-tRNA synthetase [Blastopirellula marina DSM 3645]
 gi|87286112|gb|EAQ78023.1| prolyl-tRNA synthetase [Blastopirellula marina DSM 3645]
          Length = 506

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 144/439 (32%), Gaps = 89/439 (20%)

Query: 34  QHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYG 90
           + S   G     P G    +N+ A++      TG      P       L  E+   + + 
Sbjct: 32  EVSPVRGCMVIKPWGWSIWENMQAVLDGMFKETGHENAYFPLFIPMSFLEKEAEHVEGFA 91

Query: 91  KEMLRLADRN---------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           KE   +                   D+ +I  PT E ++  ++   ++SYR+LP    Q 
Sbjct: 92  KECAVVTHHRLEPGPNGGLVPAGKLDEPLIVRPTSETIIGAMYAKWVQSYRDLPILINQW 151

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               R ELR R   +R+ EFL ++ ++   T E +     +M   Y              
Sbjct: 152 ANVVRWELRTRM-FLRTTEFLWQEGHTAHATAEEAIAETRQMLEVY-------------- 196

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                             AD  E  +          I  E T ++     +  +      
Sbjct: 197 ------------------ADFAENYMAMP------VIKGEKTSWERFPGASMTL------ 226

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                            E+     + ++ G   + G  +S      F+  +G + +    
Sbjct: 227 ---------------SIESMMQDRKALQAGTSHFLGQNFSKAQEIKFQTQEGTEEFAWTT 271

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARL 372
           S+G+ + R+V  +I +  D  G+I P  +AP  I L+ I   D+         +++ + L
Sbjct: 272 SWGV-STRLVGGLIMTHSDDDGLIVPPRLAPKHIVLLPIYRSDEERAAVLAYVDQLNSAL 330

Query: 373 S-----KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT--GI 425
                      V  DD   + G +       G PL+  +G + V+   V +  R      
Sbjct: 331 KGVQYHGAPVRVLIDDRDIRGGEKTWQHIKKGVPLRAEIGPRDVASDSVFLARRDQSPKD 390

Query: 426 REDMSLEEVINYASHRFSN 444
           ++     E++   +     
Sbjct: 391 KKGTPKAELVATITTLLDE 409


>gi|326479249|gb|EGE03259.1| prolyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 631

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 82/236 (34%), Positives = 127/236 (53%), Gaps = 5/236 (2%)

Query: 2   RRSKYFLPI--LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R S +++P   + E      + S+ L++R G + Q   G++  LPLG +  + +  +I +
Sbjct: 41  RASSFWIPSGGIAEAKNG--VDSNDLLIRAGFLRQPYSGVFHLLPLGLRVQEKLERLIDK 98

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
              +  A ++S+ +L S  LW +SGR      E+ R  DR     +  PTHEE +T +  
Sbjct: 99  HMRKLSAAKLSLSSLSSQALWKKSGRLHDDDSEVFRFVDRKKTPFLLAPTHEEEITSVVS 158

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             IKSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+FD T   +  +YN +  
Sbjct: 159 GLIKSYRDLPLRVYQISRKYRDEPRPRHGLLRGREFVMKDLYTFDSTEAEAIKTYNTVKE 218

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +Y+ +F  L L  +   A SG +GG+LSHEF   +  GE  +       ++    E
Sbjct: 219 AYISLFKELKLPYVVASASSGNMGGNLSHEFHFPSPKGEDTIVSCSKC-EYVFNEE 273



 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 14/192 (7%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-----------GKDHYVQM 314
               +       + + IE+ H F+ GT+YS  + A                  +   +QM
Sbjct: 440 DECPNCGNPALKTDQSIELAHTFHLGTRYSEVLQANVSINPASLPGAEKKGKQEPVPIQM 499

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G +GIG  R+++AV +   D KG+ WP ++APF++ ++      +   +    I  + ++
Sbjct: 500 GCHGIGVSRMISAVSDILADEKGLNWPQAIAPFQVVVVP-GKGLEKEGELVYDIVTQNTQ 558

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV-SDSKVEIKHRLTGI-REDMSLE 432
              D   DD  +    +   AD +G+P+ + VG     + +KVE++ R  G  R  +SLE
Sbjct: 559 QLIDTILDDRKKDFAWKLRDADTIGYPIILAVGKNSWGAGNKVEVQCRRLGNLRTQVSLE 618

Query: 433 EVINYASHRFSN 444
           EV  + S   SN
Sbjct: 619 EVPEFVSSLLSN 630


>gi|67523387|ref|XP_659754.1| hypothetical protein AN2150.2 [Aspergillus nidulans FGSC A4]
 gi|40745038|gb|EAA64194.1| hypothetical protein AN2150.2 [Aspergillus nidulans FGSC A4]
 gi|259487529|tpe|CBF86275.1| TPA: prolyl-tRNA synthetase (AFU_orthologue; AFUA_2G16010)
           [Aspergillus nidulans FGSC A4]
          Length = 594

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/430 (16%), Positives = 131/430 (30%), Gaps = 81/430 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
            G Y   P      + +     +   + G    S P   S D+   E    + +  E+  
Sbjct: 110 SGCYILKPASYSIWEEIQQWFNQRIKKIGVKNCSFPLFVSEDVLQREKDHIEGFAAEVAW 169

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 170 VTHAGSTPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKHPQPFLR 229

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT E                                        E +
Sbjct: 230 TREFLWQEGHTAHLTKEA------------------------------------AHEEVM 253

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
            + D            +   I  E      +    +  E++    Y  T + +       
Sbjct: 254 YILD------------LYAQIYEELLAVPVVKGQKTEKEKFAGGLYTTTVEGYIPA---- 297

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA-----MRVV 325
                  + RGI+ G     G  +S   + T +    K    +   +          R +
Sbjct: 298 -------TGRGIQGGTSHGLGQNFSKMFNITVEDPSAKGDEKKPPLHVWQNSWGLSTRTL 350

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIK-----AHDQVCRDACE--KIYARLSKVGCD 378
             ++    D  G++ P  VA  ++ ++ +        +   +   E  KI   L+  G  
Sbjct: 351 GVMVMIHSDDNGLVLPPRVAENQVVVVPVGITAKLTEEDRAKLYAEVDKITETLTAAGVR 410

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMSLEEV 434
              D   G   G +F   +L G PL++  G    + + V    R       +  + + E+
Sbjct: 411 AISDKREGYSPGWKFNEWELRGVPLRIEFGPGESAGNFVSTARRDIPGKDGKGTIPIPEL 470

Query: 435 INYASHRFSN 444
                     
Sbjct: 471 STAVPALLDT 480


>gi|298709340|emb|CBJ31276.1| ATP binding / tRNA ligase/ threonine-tRNA ligase [Ectocarpus
           siliculosus]
          Length = 470

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 2/167 (1%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
            +++   RD  +   KL L + +      G+  W P G      +    + +    G   
Sbjct: 274 RMVEAKRRDHRVLGKKLDLFS-LQEDAGGGLVFWHPKGSTIRMLIENFWKAQHLDKGYEL 332

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + + DLW  SG +D Y   M    D         P +      +++  ++SYR L
Sbjct: 333 LYTPHVANLDLWKTSGHFDFYKDGMFDQMDVEGDQYQIKPMNCPFHCLVYKDDLRSYREL 392

Query: 129 PFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           P  + ++   +R E      G+MR R F   DA+ F L  +      
Sbjct: 393 PIRWAEMGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQLEDEII 439


>gi|326474290|gb|EGD98299.1| prolyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 631

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 82/236 (34%), Positives = 127/236 (53%), Gaps = 5/236 (2%)

Query: 2   RRSKYFLPI--LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R S +++P   + E      + S+ L++R G + Q   G++  LPLG +  + +  +I +
Sbjct: 41  RASSFWIPSGGIAEAKNG--VDSNDLLIRAGFLRQPYSGVFHLLPLGLRVQEKLERLIDK 98

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
              +  A ++S+ +L S  LW +SGR      E+ R  DR     +  PTHEE +T +  
Sbjct: 99  HMRKLSAAKLSLSSLSSQALWKKSGRLHDDDSEVFRFVDRKKTPFLLAPTHEEEITSVVS 158

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             IKSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+FD T   +  +YN +  
Sbjct: 159 GLIKSYRDLPLRVYQISRKYRDEPRPRHGLLRGREFVMKDLYTFDSTEAEAIKTYNTVKE 218

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +Y+ +F  L L  +   A SG +GG+LSHEF   +  GE  +       ++    E
Sbjct: 219 AYISLFKELKLPYVVASASSGNMGGNLSHEFHSPSPKGEDTIVSCSKC-EYVFNEE 273



 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 14/192 (7%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-----------GKDHYVQM 314
               +       + + IE+ H F+ GT+YS  + A                  +   +QM
Sbjct: 440 DECPNCGNPALKTDQSIELAHTFHLGTRYSEVLQANVSINPASLPGAEKKGKQELVPIQM 499

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G +GIG  R+++AV +   D KG+ WP ++APF++ ++      +   +    I  + ++
Sbjct: 500 GCHGIGVSRMISAVSDILADEKGLNWPQAIAPFQVVVVP-GKGLEKEGELVYDIVTQNTQ 558

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV-SDSKVEIKHRLTGI-REDMSLE 432
              D   DD  +    +   AD +G+P+ + VG     + +KVE++ R  G  R  +SLE
Sbjct: 559 QLIDTILDDRKKDFAWKLRDADTIGYPIILAVGKNSWGAGNKVEVQCRRLGNLRTQVSLE 618

Query: 433 EVINYASHRFSN 444
           EV  + S   SN
Sbjct: 619 EVPEFVSSLLSN 630


>gi|289192307|ref|YP_003458248.1| threonyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
 gi|288938757|gb|ADC69512.1| threonyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
          Length = 620

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 73/426 (17%), Positives = 140/426 (32%), Gaps = 48/426 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + W P G+   D +   +       GA+ +  P +            D +G+   R 
Sbjct: 216 PGHFRWYPKGKLIRDLLADYVYNLVVSMGAMPVETPIMYDLGNKAIREHADKFGERQYRF 275

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSRE 154
               ++ ++           + +      R LP   Y++    FR E R    G+ R R 
Sbjct: 276 RQ-GNRELMLRFAACFGQFMMKKDMYLLPRYLPLKLYELSTYSFRYEQRGELVGLKRLRC 334

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++  L  E +   + K F   L+    L L           I       F    
Sbjct: 335 FTMPDMHTVCLNLEQAMEEFEKQFWECLKTGDDLNLSY-------SVIFRFTKDFFDEHR 387

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D              F I  E         +  I+ +    +    D+    + DSL   
Sbjct: 388 D------------WFFKIAKEYKSKYGKDVILEILPKRKHYWVGKVDI---AVIDSLGRP 432

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS-- 332
                  I+V        + +          +G+ + + +     G++  V   +     
Sbjct: 433 IENPTVQIDV--------ESAKRFDIKVHTNEGEVYPIILHCSPTGSIERVLCGLLEKAA 484

Query: 333 ---HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
               +G   + P  ++P ++ +I +    +   D   K+  +L +      +DD  E + 
Sbjct: 485 IEAKEGNAPMLPVWLSPIQVRVIPVA---ERHYDYALKVAEKLRESNIRADFDDREESVS 541

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGI---REDMSLEEVINYASHRFSN 444
            +   A     P  V+VG + +      V I+ + T     +E M+++E+I       +N
Sbjct: 542 KKIRNAGKEWIPYVVVVGDEEMESGKLTVTIREKSTLKKPYKEKMTVDELIERVKKETAN 601

Query: 445 --NRPV 448
              RP+
Sbjct: 602 YPYRPL 607


>gi|225464551|ref|XP_002272741.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 547

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 59/419 (14%), Positives = 118/419 (28%), Gaps = 72/419 (17%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +  +   TG   M  P       +  E+   + +  E+  +     K
Sbjct: 104 PYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGK 163

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                       RP    + +  F       
Sbjct: 164 ELEEKLVV---------------------------------RPTSETIVNHMFTQWIHSY 190

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            DL P       N              L+ +     +               +  E +  
Sbjct: 191 RDL-PLMINQWANVTRWEMRTKPFVRTLEFLWQEGHTA----------HATPEEAEKEAL 239

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                +      E      I    S VE +              +     E      + +
Sbjct: 240 -QMIDVYTKFAYEQAAIPVITGRKSKVETFAG-----------AVRTYTIEAMMGDRKAL 287

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           + G     G  +S      F   +G+  ++   S+ + + R +  +I +  D  G++ P 
Sbjct: 288 QAGTSHNLGQNFSRAFGTQFTDENGQRQHIWQTSWAV-STRFIGGIIMTHGDDAGLMLPP 346

Query: 343 SVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLL 398
            +AP ++ +I I           +A   +   L      V  DD  ++  G +F   ++ 
Sbjct: 347 KIAPIQVVIIPIWKKADEKTGVLNAASSVTEVLKSANIKVKVDDSDQRTPGWKFNFWEMK 406

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRL-TGIREDM-------SLEEVINYASHRFSNNRPVL 449
           G PL++ +G + VS   V I  R   G +  +       S+  ++ Y   +    +  L
Sbjct: 407 GVPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSI--LVAYVKDKLDEIQSSL 463


>gi|331248340|ref|XP_003336794.1| hypothetical protein PGTG_18362 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309315784|gb|EFP92375.1| hypothetical protein PGTG_18362 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 677

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 73/431 (16%), Positives = 132/431 (30%), Gaps = 73/431 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P   +  + +     +     G      P   S+  L  E    + +  E+  
Sbjct: 187 SGCYILKPASYRIWEIIQRWFDDRIKALGVENAYFPMFVSSRVLEKEKDHIEGFAPEVAW 246

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        ++ +   PT E VM   +   I+SYR+LP    Q     R E +       
Sbjct: 247 VTRAGQSELEEHIAIRPTSETVMYPYYAKWIQSYRDLPLKLNQWNSVVRWEFKNPP---- 302

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                       DL+P      + +      +  H   L       E   I         
Sbjct: 303 ------------DLSPIDLIEPFIRTREFLWQEGHTAHLHREEADLEVRQILD------- 343

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                           +   +  E         + S  E++      T       +   +
Sbjct: 344 ----------------LYRGVYEELLAVPVTPGVKSEKEKFAGGLYTT------TVEGFV 381

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH----------YVQMGSYGIGA 321
           P     S RGI+       G  +S   + + +                 +V   S+G+ +
Sbjct: 382 P----TSGRGIQGATSHCLGQNFSKMFNISVEDPSKPVDPNAGTQAEKLFVWQNSWGL-S 436

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSK 374
            R +  ++    D KG++ P  VA  ++ +I +           +   D  E + ARL K
Sbjct: 437 TRSIGVMVMVHADDKGLVLPPRVANLQVIVIPVGIVASTGPESRKDLYDKSEDLAARLRK 496

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G     D   G   G +F   ++ G PL++ +G K ++     +  R TG ++   LE 
Sbjct: 497 AGVLARTDIREGYTPGWKFNSWEMKGIPLRLELGPKDLASQTTLVVRRDTGEKKSYPLET 556

Query: 434 VINYASHRFSN 444
           +          
Sbjct: 557 LDVEIPKLLET 567


>gi|159036838|ref|YP_001536091.1| prolyl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|157915673|gb|ABV97100.1| prolyl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 468

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 60/408 (14%), Positives = 125/408 (30%), Gaps = 59/408 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + + A +      +GA     P     D L  E+   + +  E+  +     K
Sbjct: 39  PAGYAIWERMQAEMDNRIKASGAENAYFPLFIPEDHLKREAEHVEGFSPELAVVTHGGGK 98

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 99  QLAEPVVVRP-------------------------------------------------- 108

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +         K   SY  +   L   +  +R E  P     + EF+     G T   
Sbjct: 109 --TSETVIGEFMAKWIDSYRDLPLLLNQWANVVRWELRPRIFLRTSEFL--WQEGHTAHA 164

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             +D   +     +  ++D++     +        A           +L E      + +
Sbjct: 165 TRQDARAYARKILHEAYEDLMVNVLAIPVQVGLKTARERFAGATATYTL-EGMMGDGKAL 223

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++G     G  +SL     +  A G        S+G  + R++  +I    D  G+  P 
Sbjct: 224 QLGTSHELGQNFSLAFGINYTSATGGVELAWTTSWGT-STRMLGGLIMCHGDDNGLRVPP 282

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFP 401
            +AP +  ++ +K   +   +A  +++  L   G  V  DD  +   G +   A+L G+P
Sbjct: 283 KLAPVQAYVMVVKDG-EGVAEAAGRLHDGLRDAGVRVALDDRTDTPFGRRAVDAELRGYP 341

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++V +G + ++     +  R  G +  + + +V+         ++  L
Sbjct: 342 VRVEIGPRDLAAGNAVVVRRTDGSKSPVPVADVVGAVRAALEADQQAL 389


>gi|114152249|sp|Q2RZJ2|SYP_SALRD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 490

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 65/430 (15%), Positives = 143/430 (33%), Gaps = 51/430 (11%)

Query: 27  LRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ES 83
           +R G + ++S   G     P G    +N+   + +    TG      P          E+
Sbjct: 20  VRNGQLAENSPARGCMIIKPNGMALWENMRDQLDQMFKDTGHQNYYFPLFIPERYMEREA 79

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
              + + KE   +          G    +  +++  ++I                     
Sbjct: 80  EHVEGFAKECAVVTHSRLTQDEEGDLVPDPESELGENYIV-------------------- 119

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
                                 +      +Y+K   SY  +       +  +R E  P  
Sbjct: 120 -------------------RPTSETIIWDTYSKWIQSYRDLPLLYNQWANVVRWEMRPRL 160

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
              + EF+     G T      + ++      +            +         +    
Sbjct: 161 FLRTAEFL--WQEGHTAHATETEAVEEAERMLDVYTT-FAEEYMAMPVLQGRKTESERFP 217

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +     E      + ++ G   + G  ++     TF   D ++ YV   S+G+ + R
Sbjct: 218 G-AVDTYCIEAMMQDGKALQAGTSHFLGQNFAKAFDCTFTNEDNEEEYVWATSWGV-STR 275

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVF 380
           ++  +I +  D +G++ P  +AP ++ ++ +   D       + CE++  RL   G  V 
Sbjct: 276 LIGGLIMTHSDDQGLVLPPKLAPHQVVIVPLFFDDDQEGPVMETCERLQERLEDHGIRVK 335

Query: 381 WD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            D +  +  G +F+  +L G PL++ +G + + +  VE+  R T  +E +  + +    S
Sbjct: 336 MDQNHTQSPGWRFSEHELRGVPLRLAIGPRDLENDNVEMARRDTQEKEVVPQDGIAERVS 395

Query: 440 HRFSNNRPVL 449
               + +  L
Sbjct: 396 DTLDDIQHAL 405


>gi|317055716|ref|YP_004104183.1| glycyl-tRNA synthetase [Ruminococcus albus 7]
 gi|315447985|gb|ADU21549.1| glycyl-tRNA synthetase [Ruminococcus albus 7]
          Length = 461

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/440 (12%), Positives = 132/440 (30%), Gaps = 50/440 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+    R++  +     +      L +   WV SG    +   ++   
Sbjct: 35  WDYGPLGVELKNNIKDAWRKKFVQENKYNVGLDSAILMNPQTWVASGHIGGFSDPLMDCK 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +   +        +   T++       + N     Y  +         +      R+F +
Sbjct: 95  ECKTRHRADNLIEDFDGTNVAG-----WSNEQMMDYIKEKGIPCPNCGKHNFTDIRQFNL 149

Query: 158 KDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRAESG 200
                  +T +     Y                             ++G           
Sbjct: 150 MFKTFQGITEDSKSELYLRPETAQGIFVNFANIQRTTRKKVPFGVAQVGKSFRNEITPGN 209

Query: 201 PIGGDLSH-----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            I           EF     T        + F    + S N   +++   +   E+    
Sbjct: 210 FIFRVREFEQMELEFFCKPGTDLEWFDYWRSFCKNFLLSLNIKEENLRLRDHSAEEL-CF 268

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y+  +            E   V+ R           +  SL     F     + +   + 
Sbjct: 269 YSKATTDFEYLFPFGWGELWGVADRTDYDLTQHINTSGKSLDY---FDPETNERYIPYVI 325

Query: 316 SYGIGAMRVVAAVIESSHDGKG------------IIWPDSVAPFKISLINIKAHDQVCRD 363
              +G  R+   ++  ++D +             + +  ++APFK  ++ +        +
Sbjct: 326 EPSLGVERLFLTIVTEAYDEEDIGTPEKPDVRTVMHFHPALAPFKACVLPLSKK---LAE 382

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++Y  L      V +D+ G  IG ++   D +G P  +        D  V ++ R +
Sbjct: 383 PAGELYDTL-AKNFSVDYDETG-SIGKRYRRQDEIGTPFCITYDFDSAEDGCVTVRDRDS 440

Query: 424 GIREDMSLEEVINYASHRFS 443
             +E + ++E++ Y + + +
Sbjct: 441 MEQERVKIDELVEYINKKIA 460


>gi|312087334|ref|XP_003145431.1| hypothetical protein LOAG_09856 [Loa loa]
 gi|307759406|gb|EFO18640.1| hypothetical protein LOAG_09856 [Loa loa]
          Length = 528

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 61/431 (14%), Positives = 126/431 (29%), Gaps = 72/431 (16%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           +  MI  +   G Y   P      + +     EE  + G      P   S   L  E   
Sbjct: 72  KAEMIEYYDISGCYVLRPWSYAIWEFIQEWFDEEIKKLGVKNCYFPLFVSQSALEREKTH 131

Query: 86  YDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
              +  E+  +       +       PT E VM   +   ++S+R+LP    Q     R 
Sbjct: 132 ISDFAPEVAWVTRAGQSDLAEAIAIRPTSETVMYPSYAKWVQSHRDLPIKLNQWCNVVR- 190

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                       EF          TP      +                  +    +   
Sbjct: 191 -----------WEF-------KHPTPFLRTREFLWQEGHTAFQTKTEAEDEVFKILDLYA 232

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                                         I ++      I    +  E++      T+ 
Sbjct: 233 Q-----------------------------IYTDLLAIPVIKGRKTEKEKFAGGEFTTTV 263

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                +          + RGI+     + G  +S   + +F+  +G        +    +
Sbjct: 264 EAYVPI----------NGRGIQGATSHHLGQNFSKMFNISFEDPNGSGKVHVWQNSWGLS 313

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK----AHDQ---VCRDACEKIYARLSK 374
            R + A++    D  G++ P  VA  ++ ++ +       D+      +  ++I   L  
Sbjct: 314 TRTIGALVMIHGDNYGLVLPPKVAAIQMIIVPVGITAQTKDEQKVALIEKAKEINDVLVN 373

Query: 375 VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                  D       G +F   +L G P+++ +G K +++S+V    R +G +  + ++ 
Sbjct: 374 ASIRAELDVRDNISSGWKFNHWELKGIPVRIEIGPKDLANSQVTCVIRYSGEKRIIPMDG 433

Query: 434 VINYASHRFSN 444
           +     +    
Sbjct: 434 LATKCKNMLDE 444


>gi|256810117|ref|YP_003127486.1| threonyl-tRNA synthetase [Methanocaldococcus fervens AG86]
 gi|256793317|gb|ACV23986.1| threonyl-tRNA synthetase [Methanocaldococcus fervens AG86]
          Length = 618

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 70/423 (16%), Positives = 138/423 (32%), Gaps = 42/423 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + W P G+   D +   +       GA+ +  P +            D +G+   R 
Sbjct: 214 AGHFRWYPKGKLIRDLLADYVYNMVVNLGAMPVETPIMYDLGNPAIREHADKFGERQYRF 273

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSRE 154
               +K ++           + +      R LP   Y++    FR E R    G+ R R 
Sbjct: 274 RQ-GNKELMLRFAACFGQFMMKKDMYLLPRYLPLKLYELSTYSFRYEQRGELVGLKRLRC 332

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++  L  + +   + K F   L+    L             I     + F    
Sbjct: 333 FTMPDMHTVCLDLKQAMEEFEKQFWECLKTGDDL-------DLSYSVIFRFTKYFFEEHR 385

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D              F I  E  +      +  I+ +    +    D+    + DSL   
Sbjct: 386 D------------WFFKIAKEYKNKYGKDVILEILPKRKHYWVGKVDI---AVIDSLGRP 430

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIESSH 333
                  I+V        + +   +      +G+ + + +     G   RV+  ++E + 
Sbjct: 431 IENPTVQIDV--------ESAKRFNIKVHTNEGEVYPIILHCSPTGSIERVLCGLLEKAA 482

Query: 334 DGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                     +  +   +   +    +   D   KI  +L +      +DD  + +  + 
Sbjct: 483 IEAEKGKAPMLPVWLSPIQVRVIPVAERHYDYALKIAEKLRENNIRADFDDREDSVSKKI 542

Query: 393 AVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGI---REDMSLEEVINYASHRFSN--N 445
             A     P  V+VG + +      V ++ + T     +E M+L+E+I+      +N   
Sbjct: 543 RNAGKEWIPYVVVVGDEEMDSGELTVTVREKSTLKKPHKEKMTLDELIDKIKKETANYPY 602

Query: 446 RPV 448
           RP+
Sbjct: 603 RPL 605


>gi|297191796|ref|ZP_06909194.1| prolyl-tRNA synthetase 2 [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197721687|gb|EDY65595.1| prolyl-tRNA synthetase 2 [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 470

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 57/408 (13%), Positives = 125/408 (30%), Gaps = 60/408 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +       GA     P       L  E+   + +  E+  +     K
Sbjct: 41  PYGYGLWERMQQEMDARIKAAGAQNAYFPLFIPQSYLTREAEHVEGFAPELAVVTHGGGK 100

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 101 ELEEPVVVRP-------------------------------------------------- 110

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +       ++K   SY  +   +   +  +R E  P     + EF+     G T   
Sbjct: 111 --TSETIINDYFSKWVQSYRDLPLLINQWANVVRWELRPRVFLRTTEFL--WQEGHTAHA 166

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             +D  D+        + D +     ++                   +L E      + +
Sbjct: 167 TYEDARDYAARIHRDVYADFMVNVLGIDVVLGRKTPRERFAGAINTLTL-EGMMGDGKAL 225

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++G     GT ++   + ++   DG+   V   S+G+ + R+V  +I S  D  G+  P 
Sbjct: 226 QMGTSHELGTNFAKAFNTSYLSKDGQQELVWQTSWGV-STRMVGGLIMSHGDDNGLRVPP 284

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFP 401
            +A  ++ ++ I            ++   L+  G  V  DD  +   G +    +L G P
Sbjct: 285 RLAAVQVVVMAI--KGDEAVAKVHEVGRLLTAAGLRVHVDDRVDTPFGRRAVDWELKGVP 342

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +++ +G + +      +  R+ G +E +SL+ +         +++ +L
Sbjct: 343 VRIEIGPRDLEAGTAMLARRIPGGKEPVSLDSLAALLPKILEDDQALL 390


>gi|301061986|ref|ZP_07202704.1| threonine--tRNA ligase [delta proteobacterium NaphS2]
 gi|300443910|gb|EFK07957.1| threonine--tRNA ligase [delta proteobacterium NaphS2]
          Length = 483

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 97/279 (34%), Gaps = 26/279 (9%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           ++ K  L +L+E   R+      +L L +    +   G+  W P G      +      E
Sbjct: 228 KQLKKHLHMLEEARKRNHVKLGAQLELFSTY-EEVGAGMVVWHPNGAMLRHLLEEFEIAE 286

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G      P +   DLW +SG + +Y + M    + + ++    P +      I+ S
Sbjct: 287 HLKRGYALARGPEVLKTDLWKKSGHFANYRENM-YFTEIDGQSYGMKPMNCLSHMLIYGS 345

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            I+SYR+LP  ++++    R E      G+ R REF   DA+    TP         +  
Sbjct: 346 KIRSYRDLPRRYFELGTVHRHERSGVLHGLFRVREFTQDDAHILC-TPGQLNDEIKGVLD 404

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
               +   +      +   + P     S E                   +    +     
Sbjct: 405 FVREVMG-IFQFDYELEISTRPEKSIGSDE-----------------DWELATQALEKAM 446

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
           D++     I E   A Y    DV   KL D+L    + +
Sbjct: 447 DELQLDYEINEGDGAFYGPKIDV---KLEDALGRKWQCA 482


>gi|327401820|ref|YP_004342659.1| threonyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
 gi|327317328|gb|AEA47944.1| threonyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
          Length = 615

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 69/429 (16%), Positives = 138/429 (32%), Gaps = 49/429 (11%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
            KL L          G   + P G+     +   + ++    GA+E+  P + S +    
Sbjct: 200 KKLQL-ADYEEASDSGHMRYYPKGRLIKSLLETFVTQKCIEYGAMEVETPIMYSRE--HP 256

Query: 83  S-GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ-IQLKFR 140
           +  RY         +   + +              +      +Y+NLP   Y+  +  FR
Sbjct: 257 TLRRYLERFPARQYIIKGDKREFFLRFAACFGQFLMCSDATITYKNLPLRMYELTRYSFR 316

Query: 141 DELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
            E R    G+ R R F M D ++     E +K  +   +   +     +GL         
Sbjct: 317 KEQRGELVGLRRLRAFTMPDMHTLTKDMEQAKQEFFNQYKLSVETLKEIGL--------- 367

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-FDDIISLNSIVEQWTAPYAA 258
                          +  + +V        +    E      D++    +VE W   +  
Sbjct: 368 ---------------EPEDYEVAIRVTKDFYNENKEFVHSLVDVLKKPILVEMWDQRFFY 412

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                     D+L +   +S   I+V        + +     T+    G+  +  +    
Sbjct: 413 FVLKFEFNFVDALEKASALSTVQIDV--------ENAERYDITYVNEKGEKEHPFILHCS 464

Query: 319 IG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKV 375
                 R + A++E ++  K       +  +       I    +   D   ++  ++   
Sbjct: 465 ASGAIERCIYALLEKAYMEKEKGKLPMLPVWLSPTQVRIIPVSEKYVDYAIEVAKKM--N 522

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLT-GIRED--MS 430
           G  V  DD  E +G +   A +   P   +VG   V++    V I+   T   ++   MS
Sbjct: 523 GVRVDVDDRDETLGKKIRDASMEWIPYIAVVGENEVNEGYLTVTIRSESTQKEQKRVKMS 582

Query: 431 LEEVINYAS 439
           +EE++    
Sbjct: 583 VEELVERIR 591


>gi|237733955|ref|ZP_04564436.1| prolyl-tRNA synthetase [Mollicutes bacterium D7]
 gi|229383036|gb|EEO33127.1| prolyl-tRNA synthetase [Coprobacillus sp. D7]
          Length = 479

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 63/408 (15%), Positives = 127/408 (31%), Gaps = 57/408 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   + P      + +   + +                    + E+G  + Y   ++  +
Sbjct: 38  GFIIYRPYSYAMWEAIQQYMDKR-------------------FKETGHENVYMPMLIPQS 78

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               ++        E                                         + L 
Sbjct: 79  LLQKESDHVEGFAPECAI--------------------------------VTKGGLDDLE 106

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           ++      +       Y K+  SY  +          +R E          EF+      
Sbjct: 107 ENLIIRPTSETLFCEHYAKIVNSYRDLPKLYNQWCSVVRWEKTTRPFLRGSEFLWQ---E 163

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
              V  S+             ++D       +   T            +   ++ E    
Sbjct: 164 GHTVHASETEARAETLQMLEIYEDTAKNLLAIPMLTGRKTEREKFAGAEETYTI-EALMH 222

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + ++ G   YFG  ++      F   + K  YV   S+G+ + R++ A+I    D  G
Sbjct: 223 DGKALQSGTSHYFGQGFAKAFDMKFLSKENKLEYVYQTSWGV-STRLLGAIIMVHGDNNG 281

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           ++ P  VAP ++ +I I+       D   +I  +L + G  V  D   +  G +F+ A++
Sbjct: 282 LVLPPRVAPTQVMIIPIQQQKAGVLDKAYEIEKQLKEAGIRVKVDASDKSPGWKFSEAEM 341

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE-EVINYASHRFSN 444
            G PL++ +G K + ++   I  R  G +E  +L+ E+IN        
Sbjct: 342 RGVPLRLEIGPKDIENNACVIAKRNDGTKEKYALDQELINTIKTLLDT 389


>gi|302339640|ref|YP_003804846.1| glycyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301636825|gb|ADK82252.1| glycyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 443

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 57/457 (12%), Positives = 131/457 (28%), Gaps = 43/457 (9%)

Query: 16  RDAEIASHKLML----RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT- 64
            +    S + ++    R G ++Q S       G + + PLG +  + V      E  +  
Sbjct: 2   AENREVSMEKLVSLCKRRGFVYQSSEIYGGLSGAWDYGPLGVELKNRVKDYWWREMTQLH 61

Query: 65  -GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              + +    +    +W  SG  D++   ++       +        E     +  +   
Sbjct: 62  DNIVGLDAAIMMHPRVWEASGHVDNFSDPLVDCKQCKSRFRADQIDLEAP-CPVCGNSGT 120

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
                 F           +             +     +        ++      V    
Sbjct: 121 FTEPRDFNLMFATHIGPVKDDG--------SIVYLRPETAQGIFVNFRNVVQTSRVKIPF 172

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLA---DTGETQVFCSKDFMDFPIPSENTDFD 240
              ++G            I      E + +      GE   +      +     +     
Sbjct: 173 GIAQVGKAFRNEVTTKNFIFRTCEFEQMEMQFFVKPGEDDKWFEFWKNERISYYDKLGIR 232

Query: 241 DIISLNS-IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK-YSLPM 298
                     E   A YA  +     +      E + + +R       F           
Sbjct: 233 KEKLRFHRHGENELAHYAKDAFDIEYEFPMGWQELEGIHSR-----TDFDLSRHAEYSGK 287

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKI 349
             T+   D   +   +     G  R V  V+  +++ + +          +  S+AP  +
Sbjct: 288 DLTYLDDDKSRYIPYVIETSAGLTRSVLMVLSDAYEEEELEGGDIRTVLHFHPSLAPVTV 347

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           +++ +   D    +  + + + L +    VF+D  G  IG ++   D +G P  V +   
Sbjct: 348 AVLPLVKKD-GIAEIAQGVASDLREE-FAVFYDQSGA-IGRRYRRMDEIGTPFCVTIDYD 404

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              D  V ++ R +  +  + ++E+ +       N R
Sbjct: 405 TKEDKTVTLRFRDSMEQVRVPIDELTSRIRAEIKNYR 441


>gi|323448551|gb|EGB04448.1| hypothetical protein AURANDRAFT_32534 [Aureococcus anophagefferens]
          Length = 579

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 125/423 (29%), Gaps = 79/423 (18%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNA----IIREEQNRTGAIEMSVPTL 74
           E+ +   M+  G I     G Y   P      + +       I++E           P  
Sbjct: 90  EVITKSEMIEYGKI----SGCYILRPWSFGIWEQIQKAFDGWIKDEPLEV--ENCYFPLF 143

Query: 75  Q-SADLWVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLP 129
                L  E    D +  E+  +    D  +       PT E +M   F   ++S+R+LP
Sbjct: 144 VTKGALEAEEDHVDGFAPEVAWVTRSGDSELAEPIAIRPTSETIMYPEFAKWLRSHRDLP 203

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
               Q     R E +     +RSREFL ++ ++       +                   
Sbjct: 204 LKLNQWCSVVRWEFKYPTPFLRSREFLWQEGHTAHYELAEADA----------------- 246

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                                +V A  G  +           IP   T+ +         
Sbjct: 247 ---------------------MVYAILGLYKKVYEDLLAVPVIPGTKTEKEKFA------ 279

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
                          E   D          R I+       G  +        + ADG  
Sbjct: 280 -------GGLRTTTVEAYIDGSG-------RAIQGATSHNLGQNFGKIYGIEVESADGSG 325

Query: 310 HYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDAC 365
                     G   R +  ++    D +G++ P  VAP ++ +I I +        +   
Sbjct: 326 GKRVPWQTSWGLTTRSIGVMVMVHSDDQGLVLPPRVAPVQVVVIPIISKACPLAELQGFV 385

Query: 366 EKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV-EIKHRLT 423
           + + A L   G  V  DD   +  G ++   +  G PL+V VG +  +   V  ++    
Sbjct: 386 DSVKAELKAAGLRVRVDDRGNQSPGWKYNHWEQKGVPLRVEVGPRDAAAQSVMAVRRVDG 445

Query: 424 GIR 426
           G +
Sbjct: 446 GKK 448


>gi|207343684|gb|EDZ71074.1| YKL194Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 358

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 58/343 (16%), Positives = 112/343 (32%), Gaps = 30/343 (8%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSAD 78
           + S +  L   M    S G   +LP G K  + +   ++ +Q  + G  E+  P +    
Sbjct: 41  MVSQRQDLF--MTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKT 98

Query: 79  LWVESGRYDSYGKEMLR--LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           LW +SG +++Y  +M +    D   +     P +      IF    +SY  LP  F    
Sbjct: 99  LWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFS 158

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
              R+E      G+ R R+F   D + F    +     +N + +  +             
Sbjct: 159 PLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGS 218

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            AES          + +   T            +          ++      +     A 
Sbjct: 219 GAESN---------YFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAF 269

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QM 314
           Y    D+    + D L +  +V+   ++    F    ++       FK  D        +
Sbjct: 270 YGPKLDIM---VTDHLRKTHQVATIQLD----FQLPERFD----LKFKDQDNSYKRPIMI 318

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
                G++    A++    D     WP  + P++  +I +   
Sbjct: 319 HRATFGSIERFMALLI---DSNEGRWPFWLNPYQAVIIPVNTK 358


>gi|294645076|ref|ZP_06722802.1| proline--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|292639582|gb|EFF57874.1| proline--tRNA ligase [Bacteroides ovatus SD CC 2a]
          Length = 447

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 62/397 (15%), Positives = 137/397 (34%), Gaps = 48/397 (12%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHE 111
           +   + +    TG +    P L     L  E+   + + KE   +               
Sbjct: 1   MQRQLDDMFKETGHVNAYFPLLIPKSFLSREAEHVEGFAKECAVVTH------------- 47

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
                      +       +   +    + E               ++      +     
Sbjct: 48  ----------YRLKNAEDGSGVVVDPAAKLE---------------EELIIRPTSETIIW 82

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           ++Y     SY  +       +   R E        + EF+     G T     ++  +  
Sbjct: 83  NTYKNWIQSYRDLPILCNQWANVFRWEMRTRLFLRTAEFL--WQEGHTAHATREEAEEEA 140

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           I   N  + +       V       +A        L     E      + ++ G   + G
Sbjct: 141 IRMLNV-YGEFAEKYMAVPVVKGVKSANERFAG-ALDTYTIEAMMQDGKALQSGTSHFLG 198

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
             ++      F   + K  YV   S+G+ + R++ A+I +  D  G++ P  +AP ++ +
Sbjct: 199 QNFAKAFDVQFVNKENKLEYVWATSWGV-STRLMGALIMTHSDDNGLVLPPHLAPIQVVI 257

Query: 352 INIKAHDQVCR---DACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVG 407
           + I  +D+  +      E I A+L  +G  V +D+   ++ G +FA  +L G P+++++G
Sbjct: 258 VPIYKNDEQLKQIDAKVEGIVAKLKALGISVKYDNADNKRPGFKFADYELKGVPVRLVMG 317

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            + + ++ +E+  R T  +E ++ E +  Y  +    
Sbjct: 318 GRDLENNTMEVMRRDTLEKETVTCEGIETYVQNLLEE 354


>gi|154150426|ref|YP_001404044.1| threonyl-tRNA synthetase [Candidatus Methanoregula boonei 6A8]
 gi|166223354|sp|A7I6P0|SYT_METB6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|153998978|gb|ABS55401.1| threonyl-tRNA synthetase [Methanoregula boonei 6A8]
          Length = 614

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 66/424 (15%), Positives = 135/424 (31%), Gaps = 53/424 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS---ADLWVESGRYDSYGKEML 94
           G   W+P G+   D +   +       GA  +  P +       ++      D +G+   
Sbjct: 218 GCMRWMPKGKLIRDLMADYVLALLLPYGATPVETPVMYDLGDKAIYE---HADKFGERQY 274

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRS 152
           R    N++ M+        M  I R    S   LP   Y++    FR E +    G+ R 
Sbjct: 275 RFK-SNNRDMMLRFAACFGMFSIMRDMHISKNTLPMKMYELSTYSFRHEQKGEVIGLKRL 333

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R F M D +S       +   + +      +       K +     +     +  +E  V
Sbjct: 334 RCFTMPDMHSLCTDMPEAMKCFEEQLAIGWQTGRDFETKLVAAFRCTKKFYDE--NEAWV 391

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                E+        M   I SE   + +     + ++                      
Sbjct: 392 KKIVKES-----DCPMLIEILSERVHYWEAKIDLAAIDG--------------------- 425

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIES 331
                  R IE   +       +      FK      +   +     G   RV+ A++E+
Sbjct: 426 -----QNRPIENPTVQIDVESSTRFNIKYFKDDGTPVYPPILHCSPTGSVERVICAILEN 480

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
               K    P  ++P +  ++ +    +      ++I   L+  G     D+  E +G +
Sbjct: 481 ISTQKVPALPTWLSPVQARVVPVA---ERHTAYAQEICDALNAQGIRCDLDERDESVGKK 537

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-----REDMSLEEVINYASHRFSNN- 445
              A +   P  +++G + ++  K+ +  R         +E M+ + +     +  +   
Sbjct: 538 VREAGMDWVPYVIVIGDEEMASKKLTVTIRRKSEPNKPFKEQMTTDALAATIKNETAGKP 597

Query: 446 -RPV 448
            RP+
Sbjct: 598 FRPL 601


>gi|255513372|gb|EET89638.1| prolyl-tRNA synthetase [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 484

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 132/416 (31%), Gaps = 69/416 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G+  + P G    D +     E   + G      P       L  E      +  E+  
Sbjct: 38  SGVIVFRPDGYFVWDAIRNATNELFIKAGIQNAYFPLFIPEKFLEKEKEHVKGFTPEVAW 97

Query: 96  LAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +      + D+ +   PT E +M D +   I+S+R+LP    Q     R E +     +R
Sbjct: 98  VTHAGDSKLDERLAVRPTSETIMYDSYSKWIRSWRDLPLRLNQWNNVVRWEFKHPTPFLR 157

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL  + ++   T   +    + +                        I   +  E++
Sbjct: 158 SREFLWNEGHTAFATQAEADAERDVIL----------------------GIYEKVLEEYL 195

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                         I    +  E++              L    
Sbjct: 196 A--------------------------LPGIKGRKTNYEKFAG-----------ALRSYS 218

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E+     + I+       G  +S      F    GK  YV   ++ I + R +  ++ +
Sbjct: 219 IEHLMPDGKAIQGPDFHSDGQNFSKAFEIKFLDKRGKMEYVYQNTFAI-STRELGVLVAT 277

Query: 332 SHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEKIYARLSKVGCDVFWDDMGE-QI 388
             D KG+I P  +A  ++ ++ I    +     D C+KI   L      VF DD      
Sbjct: 278 HSDDKGLIIPPKLARIQVVIVPIYKTENRDSIIDYCKKIKKELEDS-FRVFLDDSDAYSP 336

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +F   +L G P+++ +G K     +  +  R T  +      ++         +
Sbjct: 337 GWKFNEWELKGVPVRIEIGEKETKLDEATLFRRDTLAKSKAKASQIKASVESIMKD 392


>gi|14601997|ref|NP_148542.1| prolyl-tRNA synthetase [Aeropyrum pernix K1]
 gi|74581728|sp|Q9Y9G0|SYP_AERPE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|5106029|dbj|BAA81340.1| prolyl-tRNA synthetase [Aeropyrum pernix K1]
          Length = 485

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 71/414 (17%), Positives = 135/414 (32%), Gaps = 66/414 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G+  W+P G +    V  ++R   + TG  E+  P L    L   ES     +  E+  +
Sbjct: 37  GMGVWMPYGFQIRRRVLEVVRGLLDSTGHEEVLFPLLIPEHLLRRESEHIRGFEGEVYWV 96

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                + +                                                    
Sbjct: 97  THGGREELDVKLALRPT------------------------------------------- 113

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                S          SY ++   Y ++      ++   R            E   + ++
Sbjct: 114 --SETSITYMETFWIKSYRQLPKKYYQVVSIFRYETKATRPMIRLREVTTFKEAHTVHES 171

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSI--VEQWTAPYAATSDVHNEKLFDSLPEN 274
            E      +  +   I      FD ++    I    +W     A   +  + +    P+ 
Sbjct: 172 FEDA----ERQVLEAIEVYKAIFDRLLIPYVISKRPEWDKFAGALYTIAFDTIM---PDG 224

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                R +++G + + G  ++       +  D +  +    SYG+ + RVVA++I    D
Sbjct: 225 -----RALQIGTVHHLGQSFTRAFDFRIQMRDERLDHPWQTSYGV-SDRVVASLIAVHGD 278

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYARLSKVGCDVFWDDMG-EQIG 389
            +G++ P SVAP ++ +I I   D+           K    L K G  V  DD   E+ G
Sbjct: 279 DRGLVIPPSVAPIQVVVIPITPGDEEKRGKVLTYTAKAAEALEKAGLRVHVDDREWERPG 338

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++F   +  G P++V +G +      + I  R T  + ++ L E  N      +
Sbjct: 339 AKFYYWEAKGVPIRVEIGLREAEQDTLTIARRDTLEKTEVPLGEAGNRIRELMA 392


>gi|330888316|gb|EGH20977.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 250

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 74/232 (31%), Gaps = 18/232 (7%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            T   +   S +  D    +  +  D       +     A Y    +     L D L   
Sbjct: 30  STRPEKRVGSDELWDRAETALASALDSAGLPYDLQPGEGAFYGPKIEF---SLKDCLGRV 86

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSH 333
            +     ++    F    + S    A +   D        +    +G+      ++   +
Sbjct: 87  WQCGTLQLD----FNLPIRLS----AEYVSEDNSRKNPVMLHRAILGSFERFIGILIEHY 138

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           +     +P  +AP +  ++NI        D   ++   L++ G     D   E+IG +  
Sbjct: 139 E---GAFPAWLAPTQAVIMNITDK---QADFALEVEKTLAESGFRAKSDLRNEKIGFKIR 192

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              LL  P  +++G + V    V ++ R       M + +   + +   S  
Sbjct: 193 EHTLLKVPYLLVIGDREVEMQTVAVRTREGADLGSMPVAQFAEFLAQAVSRR 244


>gi|1711654|sp|P52833|SYT_PSESY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|1171431|gb|AAB05013.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. syringae]
          Length = 227

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 74/232 (31%), Gaps = 18/232 (7%)

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            T   +   S +  D    +  +  D       +     A Y    +     L D L   
Sbjct: 7   STRPEKRVGSDELWDRAESALASALDSAGQPYDLQPGEGAFYGPKIEF---SLKDCLGRV 63

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSH 333
            +     ++    F    + S    A +   D        +    +G+      ++   +
Sbjct: 64  WQCGTLQLD----FNLPIRLS----AEYVSEDNSRKNPVMLHRAILGSFERFIGILIEHY 115

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           +     +P  +AP +  ++NI        D   ++   L++ G     D   E+IG +  
Sbjct: 116 E---GAFPAWLAPTQAVIMNITDK---QADFALEVEKTLAESGFRAKSDLRNEKIGFKIR 169

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              LL  P  +++G + V    V ++ R       M + +   + +   S  
Sbjct: 170 EHTLLKVPYLLVIGDREVEMQTVAVRTREGADLGSMPVAQFAEFLAQAVSRR 221


>gi|222636488|gb|EEE66620.1| hypothetical protein OsJ_23204 [Oryza sativa Japonica Group]
          Length = 545

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 66/421 (15%), Positives = 129/421 (30%), Gaps = 76/421 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +  +   TG   M  P       +  E+   + +  E+  +     K
Sbjct: 102 PYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGK 161

Query: 103 AMIY----GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E ++  +F   I+SYR+LP    Q               MR++ F+  
Sbjct: 162 ELEEKLVVRPTSETIVNHMFTKWIQSYRDLPLMINQWANV-------TRWEMRTKPFIR- 213

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                                                   +        H      +  E
Sbjct: 214 ----------------------------------------TLEFLWQEGHTAHATLEEAE 233

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            +       +      E      I    S VE +                    E     
Sbjct: 234 KEAM-QMIDVYTKFAYEQAAIPVIPGRKSRVETFAG-----------ANRTYTIEAMMGD 281

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G     G  +S      F   + +  +V   S+ I + R V  +I +  D  G+
Sbjct: 282 RKALQAGTSHNLGQNFSRAFGTQFMDENSQIEHVWQTSWAI-STRFVGGIIMTHGDDAGL 340

Query: 339 IWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
           + P ++AP ++ ++ I           +A   +   L + G  V  DD   +  G +F  
Sbjct: 341 MLPPNIAPIQVVIVPIWKKGDEKSAVMEAVSSVQNTLKEAGIRVKVDDSELRTPGWKFNF 400

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIRE-----DMSLEEVINYASHRFSNNRPV 448
            ++ G P+++ +G + V++  V I  R   G +       M    ++++   R    +  
Sbjct: 401 YEMKGVPIRLEIGPRDVTNKSVVISRRDIPGKQGKEFGVSMDPSILVDHIKGRLVEIQAS 460

Query: 449 L 449
           L
Sbjct: 461 L 461


>gi|161833740|ref|YP_001597936.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri GWSS]
 gi|152206230|gb|ABS30540.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri GWSS]
          Length = 489

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 152/453 (33%), Gaps = 70/453 (15%)

Query: 3   RSKYFLPI-LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
            SK++  I L+ N  D      K  +R  M+ +         P G    + +  I+ +  
Sbjct: 11  YSKWYNEIILKANIAD------KSDVRGCMVIK---------PYGFSIWEKIKFILDKIL 55

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             TG   +  P L     +  E      + KE                    V+T     
Sbjct: 56  KSTGHKNVYFPLLIPKSYFSKEYNHIKGFAKE------------------CAVITHYRLK 97

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +  +             K  DEL  R                   +     +SY +   S
Sbjct: 98  NFNN----KNIIVDKNSKLEDELIVRP-----------------TSETIIWNSYKRWINS 136

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +  R    +  +R E        + EF+     G T     K+ ++      N   +
Sbjct: 137 YRDLPIRFNQWANIIRWERRTRFFLRTSEFL--WQEGHTAHSTKKEAINQAKKIINIYTN 194

Query: 241 DIIS-LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            + + +   V Q    Y+       E       E+     + +++    + G  +S    
Sbjct: 195 FLENFIAIPVIQGIKTYSEKFAGAEET---YCIESIMQDGKSLQIATSHFLGQNFSKAFD 251

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             +    G   YV   S+GI + R++ A+I +  D  G+I P  +AP +I +I +    +
Sbjct: 252 VRYTTEKGNKEYVWATSWGI-STRLIGAIIMTHSDDNGLILPPKIAPLQIVIIPVYKTQE 310

Query: 360 V---CRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                      +   L K G  + +D       G +F   ++ G P+++ +G K +    
Sbjct: 311 QLNLIEKLVLPLKESLEKRGISIKYDKRTYYTPGWKFNEYEIKGIPIRITIGKKDIDRGT 370

Query: 416 VEIKHRLTGIREDM---SLEEVINYASHRFSNN 445
           VE+  R T  ++D+    LE +I     +  +N
Sbjct: 371 VEVVRRDTLEKKDIIINKLEFLIPKILSKIQDN 403


>gi|33146799|dbj|BAC79747.1| putative prolyl-tRNA synthetase [Oryza sativa Japonica Group]
          Length = 545

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/421 (15%), Positives = 129/421 (30%), Gaps = 76/421 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +  +   TG   M  P       +  E+   + +  E+  +     K
Sbjct: 102 PYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGK 161

Query: 103 AMIY----GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E ++  +F   I+SYR+LP    Q               MR++ F+  
Sbjct: 162 ELEEKLVVRPTSETIVNHMFTKWIQSYRDLPLMINQWANV-------TRWEMRTKPFIR- 213

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                                                   +        H      +  E
Sbjct: 214 ----------------------------------------TLEFLWQEGHTAHATLEEAE 233

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            +       +      E      I    S VE +                    E     
Sbjct: 234 KEAM-QMIDVYTKFAYEQAAIPVIPGRKSRVETFAG-----------ANRTYTIEAMMGD 281

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G     G  +S      F   + +  +V   S+ I + R V  +I +  D  G+
Sbjct: 282 RKALQAGTSHNLGQNFSRAFGTQFMDENSQIEHVWQTSWAI-STRFVGGIIMTHGDDAGL 340

Query: 339 IWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAV 394
           + P ++AP ++ ++ I           +A   +   L + G  V  DD   +  G +F  
Sbjct: 341 MLPPNIAPIQVVIVPIWKKGDEKSAVMEAVSSVQNTLKEAGIRVKVDDSELRTPGWKFNF 400

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIRE-----DMSLEEVINYASHRFSNNRPV 448
            ++ G P+++ +G + V++  V I  R   G +       M    ++++   R    +  
Sbjct: 401 YEMKGVPIRLEIGPRDVTNKSVVISRRDIPGKQGKEFGVSMDPSILVDHIKGRLVEIQAS 460

Query: 449 L 449
           L
Sbjct: 461 L 461


>gi|297280760|ref|XP_002808297.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional aminoacyl-tRNA
            synthetase-like [Macaca mulatta]
          Length = 1527

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/432 (14%), Positives = 113/432 (26%), Gaps = 84/432 (19%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEM-- 93
             G Y   P      + +         + G      P   S   L  E      +  E+  
Sbjct: 1051 SGCYILRPWAYAIWEAIKDFFDAGIKKLGVENCYFPMFVSQGALEKEKTHIADFAPEVSE 1110

Query: 94   ---------LRLADRNDKAMIYGPTHE-EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
                       L       M         VM   +   ++S+R+LP    Q     R E 
Sbjct: 1111 LLFYFFAVTYSLKGEIKPXMTVSIFPCLSVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEF 1170

Query: 144  RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            +     +R+REFL                                               
Sbjct: 1171 KHPQPFLRTREFL----------------------------------------------W 1184

Query: 204  GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDV 262
             +    F  + +  E  +      +   +  E      +    +  E++    Y  T + 
Sbjct: 1185 QEGHSAFATMEEAAEEVLQILD--LYAQVYEELLAIPVVRGRKTEKEKFAGGDYTTTVEA 1242

Query: 263  HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-A 321
                           S R I+ G   + G  +S      F+                G  
Sbjct: 1243 FISA-----------SGRAIQGGTSHHLGQNFSKMFEIVFEDPKTPGEKQFAYQNSWGLT 1291

Query: 322  MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSK 374
             R +  +     D  G++ P  VA  ++ +I             +     C     RL  
Sbjct: 1292 TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLN 1351

Query: 375  VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLE 432
            V   V  D       G +F   +L G P+++ VG + +     V ++ R TG +  ++  
Sbjct: 1352 VNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVR-RDTGEKLTVAEN 1410

Query: 433  EVINYASHRFSN 444
            E          +
Sbjct: 1411 EAETKLQAILED 1422


>gi|297156878|gb|ADI06590.1| prolyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1]
          Length = 471

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/408 (15%), Positives = 122/408 (29%), Gaps = 59/408 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +       G      P       L  E+   + +  E+  +     K
Sbjct: 41  PYGYGLWERMQQDMDARIKAEGVQNAYFPLFIPQSYLTKEAEHVEGFAPELAIVTHGGGK 100

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 101 KLEEPVVVRP-------------------------------------------------- 110

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +       + K   SY  +   +   +  +R E  P     + EF+     G T   
Sbjct: 111 --TSETIINEYFAKWVQSYRDLPLLINQWANVVRWELRPRLFLRTSEFL--WQEGHTAHA 166

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             +D  DF        + D +     ++       A           +L E      + +
Sbjct: 167 TYEDARDFASRIHRHVYADFMENVLAMDVVLGRKTAKERFAGAINTLTL-EGMMGDGKAL 225

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++G     G  ++   +  F   +GK   V   S+G    R+V A++    D  G+  P 
Sbjct: 226 QLGTSHELGQNFARAFNTQFLSKEGKQELVWQTSWGS-TTRMVGALVMMHGDDSGLRIPP 284

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFP 401
            +AP +  ++ I   D+       +I  RL+  G  V  DD  +   G +    +L G P
Sbjct: 285 RLAPVQAVVLAI-KGDEAVLAKVREIGDRLTAAGVRVQVDDRTDTPFGRRAVDWELKGVP 343

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +++ VG + +      +  R+ G +E + LE + +        ++ +L
Sbjct: 344 VRIEVGPRDLEGGTAMVVRRIPGGKEPVRLEALPDLLPKVLEEDQALL 391


>gi|183602387|ref|ZP_02963753.1| glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683298|ref|YP_002469681.1| glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191259|ref|YP_002968653.1| glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196665|ref|YP_002970220.1| glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218306|gb|EDT88951.1| glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620948|gb|ACL29105.1| glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249651|gb|ACS46591.1| glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251219|gb|ACS48158.1| glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|295794252|gb|ADG33787.1| glycyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis V9]
          Length = 491

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/440 (15%), Positives = 137/440 (31%), Gaps = 42/440 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +  +++WV SG    +     E L
Sbjct: 33  WDYGPLGVALKDNIKREWWRSMVVTRPDVVGVDTSIILPSEVWVASGHVSVFNDPLIECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R+    +     E+    +  + +K                  E R    ++R+  
Sbjct: 93  TCHKRHRADKLEESYAEKHNDQLPPNGLKDIVCPDCGTRGNWT----EPRDFNMMLRTHL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +              G            I    
Sbjct: 149 GPVEDENSLHYLRPETAQGIFVDFKNVMTSSRSKPPFGIANTGKSFRNEITPGNFIFRTR 208

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E       +           + +++       E+       T D
Sbjct: 209 EFEQMEMEFFVEPGTDEDWHQYWINARTQWYIDLGVNPENLRHYEHPKEKLAHYSKRTVD 268

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     F      +     G+     F  G   K+S    + F  A G+ +   +     
Sbjct: 269 IEYRFGFQGSDWGELE---GVANRTDFDLGAHAKHSGEDLSYFNQATGEKYIPYVIEPAA 325

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++D                      +AP K +++ +    ++     +
Sbjct: 326 GLSRSLMAFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQS-VAQ 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L      + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +
Sbjct: 385 DLAQDLRLNDWMIDYDESGA-IGRRYRRQDEIGTPLCITVDFDTLDDQAVTIRERDTMQQ 443

Query: 427 EDMSLEEVINYASHRFSNNR 446
           E ++L +V +Y + R ++ R
Sbjct: 444 ERVALTQVADYVAKRINDKR 463


>gi|325957845|ref|YP_004289311.1| threonyl-tRNA synthetase [Methanobacterium sp. AL-21]
 gi|325329277|gb|ADZ08339.1| threonyl-tRNA synthetase [Methanobacterium sp. AL-21]
          Length = 614

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/405 (13%), Positives = 120/405 (29%), Gaps = 41/405 (10%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD-SYGKEMLRLADRN 100
           W P G+   D +   +       GA+ +  P +   DL  ++ R       E        
Sbjct: 225 WYPKGRLIRDLLADYVYNLVTERGAMPVETPIMY--DLADDAIRVHAEKFGERQYRMGTK 282

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSREFLMK 158
           +K ++           +      +++NLP   Y++    FR E +    G+ R R F M 
Sbjct: 283 NKELMLRYACCFGAFRVLSDSFLTWKNLPVGIYELSTYSFRLEKKGEVVGLKRLRGFTMP 342

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           D ++     + +   ++       +    L +    +   +                  E
Sbjct: 343 DLHTVCADVDHAMVEFDGQIDMCKQTGIDLEVNYEVIMRATKDFF-------------EE 389

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            + +          P       +          + A              D L       
Sbjct: 390 NKEWVFSSADKIGKPVLLEILPERKHYWIAKMDFAA-------------IDYLGRPIENP 436

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
              I+V     FG         T+   D  + H + +     G++  V   +      + 
Sbjct: 437 TIQIDVESGERFG--------ITYIDPDENEVHPIIIHCSPTGSIERVICSLLEKSAIER 488

Query: 338 IIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
              P  +  +       +    +   D  + I  ++      V  D+  E +G +   A 
Sbjct: 489 NFRPPMLPIWLTPSQVRVIPIAERHNDYAQDIVQKIRDQNVRVDLDERHETVGKKIRNAA 548

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
               P  +++G + +    V +  R T  + +M ++E++N     
Sbjct: 549 GDWVPYVIVIGDRELEGGAVTVNVRETNEKIEMDIDELVNRIHEE 593


>gi|221122393|ref|XP_002164939.1| PREDICTED: similar to threonyl-tRNA synthetase, partial [Hydra
           magnipapillata]
          Length = 801

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 94/286 (32%), Gaps = 11/286 (3%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     +  S G   +LP G    + + + IR E N  G  E+ 
Sbjct: 311 EEAAKRDHRKIGKEQELF--FFNDLSPGSAFFLPKGAFIYNTLVSFIRSEYNNRGFQEVI 368

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + S  LW +SG +  Y   M       ++     P +      +F +  +S+R LP 
Sbjct: 369 TPNMFSTKLWEQSGHWQHYATNMFSFEVEKER-FALKPMNCPGHCVMFNNRPRSWRELPL 427

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F    +  R+EL     G+ R R F   DA+ F    +  K        +  R   ++G
Sbjct: 428 RFADFGVLHRNELSGTLTGLTRVRRFQQDDAHIFCTMDQVFKRVETFQEEAAKRDHRKIG 487

Query: 190 LKSIPMR----AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                 R      +  +      E         T +F  +   +             +  
Sbjct: 488 KSEYNNRGFQEVITPNMFSTKLWEQSGHWQHYATNMFSFEVEKERFALKPMNCPGHCVMF 547

Query: 246 NSIVEQWTAPYAATSDV---HNEKLFDSLPENKRVSARGIEVGHIF 288
           N+    W       +D    H  +L  +L    RV     +  HIF
Sbjct: 548 NNRPRSWRELPLRFADFGVLHRNELSGTLTGLTRVRRFQQDDAHIF 593


>gi|147776717|emb|CAN76962.1| hypothetical protein VITISV_029502 [Vitis vinifera]
          Length = 599

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/419 (14%), Positives = 116/419 (27%), Gaps = 72/419 (17%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +  +   TG   M  P       +  E+   + +  E+  +     K
Sbjct: 104 PYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGK 163

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                       RP    + +  F       
Sbjct: 164 ELEEKLVV---------------------------------RPTSETIVNHMFTQWIHSY 190

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            DL P       N              L+ +     +               +  E +  
Sbjct: 191 RDL-PLMINQWANVTRWEMRTKPFVRTLEFLWQEGHTA----------HATPEEAEKEAL 239

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                +      E      I    S VE +                    E      + +
Sbjct: 240 -QMIDVYTKFAYEQAAIPVITGRKSKVETFAG-----------AXRTYTIEAMMGDRKAL 287

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           + G     G  +S      F   +G+  ++   S+   + R +  +I +  D  G++ P 
Sbjct: 288 QAGTSHNLGQNFSRAFGTQFTDENGQRQHIWQTSWAX-STRFIGGIIMTHGDDAGLMLPP 346

Query: 343 SVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLL 398
            +AP ++ +I I           +A   +   L      V  DD  ++  G +F   ++ 
Sbjct: 347 KIAPIQVVIIPIWKKADEKTGVLNAASSVTEVLKSANIKVKVDDSDQRTPGWKFNFWEMK 406

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRL-TGIREDM-------SLEEVINYASHRFSNNRPVL 449
           G PL++ +G + VS   V I  R   G +  +       S+  ++ Y   +    +  L
Sbjct: 407 GVPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSI--LVAYVKDKLDEIQSSL 463


>gi|294508573|ref|YP_003572632.1| Prolyl-tRNA synthetase [Salinibacter ruber M8]
 gi|294344902|emb|CBH25680.1| Prolyl-tRNA synthetase [Salinibacter ruber M8]
          Length = 490

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/430 (15%), Positives = 143/430 (33%), Gaps = 51/430 (11%)

Query: 27  LRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ES 83
           +R G + ++S   G     P G    +N+   + +    TG      P          E+
Sbjct: 20  VRNGQLAENSPARGCMIIKPNGMALWENMRDQLDQMFKDTGHQNYYFPLFIPERYMEREA 79

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
              + + KE   +          G    +  +++  ++I                     
Sbjct: 80  EHVEGFAKECAVVTHSRLTQDEEGDLVPDPESELGENYIV-------------------- 119

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
                                 +      +Y+K   SY  +       +  +R E  P  
Sbjct: 120 -------------------RPTSETIIWDTYSKWIQSYRDLPLLYNQWANVVRWEMRPRL 160

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
              + EF+     G T      + ++      +            +         +    
Sbjct: 161 FLRTAEFL--WQEGHTAHATETEAVEEAERMLDVYTT-FAEEYMAMPVLQGRKTESERFP 217

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +     E      + ++ G   + G  ++     TF   D ++ YV   S+G+ + R
Sbjct: 218 G-AVDTYCIEAMMQDGKALQAGTSHFLGQNFAKAFDCTFTNEDNEEEYVWATSWGV-STR 275

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVF 380
           ++  +I +  D +G++ P  +AP ++ ++ +   D       + CE++  RL   G  V 
Sbjct: 276 LIGGLIMTHSDDQGLVLPPKLAPHQVVIVPLFFDDDQEGPVMETCERLQERLEDYGIRVK 335

Query: 381 WD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            D +  +  G +F+  +L G PL++ +G + + +  VE+  R T  +E +  + +    S
Sbjct: 336 MDQNHTQSPGWRFSEHELRGVPLRLAIGPRDLENDNVEMARRDTQEKEVVPQDGIAERVS 395

Query: 440 HRFSNNRPVL 449
               + +  L
Sbjct: 396 DTLDDIQHAL 405


>gi|11498158|ref|NP_069384.1| threonyl-tRNA synthetase [Archaeoglobus fulgidus DSM 4304]
 gi|3334363|sp|O29703|SYT_ARCFU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2650076|gb|AAB90685.1| threonyl-tRNA synthetase (thrS) [Archaeoglobus fulgidus DSM 4304]
          Length = 619

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 137/417 (32%), Gaps = 46/417 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRYDSYGKEMLR 95
            G   + P G+     +   I  +    GA+E+  P +   +    +  RY         
Sbjct: 215 SGHIRYYPKGRLVKTLLEQFITRKCIDYGAMEVETPIMYDRN--HPTLRRYLERFPARQY 272

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ-IQLKFRDELRPR-FGVMRSR 153
           +   + +              +  S   +YRNLP   Y+  +  FR E R    G+ R R
Sbjct: 273 IIKGDKREFFLRFAACFGQFLMLSSSTITYRNLPLKIYELTRYSFRKEQRGELVGLRRLR 332

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F M D ++     E +K  +   +   + +   +GL                       
Sbjct: 333 AFTMPDMHTVAKDMEQAKEEFFNQYRLSVEVLREIGL----------------------- 369

Query: 214 ADTGETQVFCSKDFMDFPIPSENTD-FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            +  + +V        +    E      DI+    ++E W   +            D+L 
Sbjct: 370 -EPEDYEVAVRITKDFYEENREFVHSLVDILKKPILIEMWDHRFFYFVLKFEFNFVDALD 428

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG--AMRVVAAVIE 330
           +   +S   I+V        + +     TF  +DGK+ +  +    +     RV+ A++E
Sbjct: 429 KASALSTVQIDV--------ENAERYGITFVDSDGKEKHPYILHCSVSGAVERVMYALLE 480

Query: 331 SSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            +           +  +       +    +   DA  KI   +++ G  V  DD  E +G
Sbjct: 481 KAKFMLDEGRLPMLPVWLSPTQVRVIPVSERFVDAAIKIADDIARNGIRVDVDDRNETLG 540

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE-----DMSLEEVINYASHR 441
            +   A     P   +VG K +   K+ +  R    ++     +MS EE+       
Sbjct: 541 KKIRDAQTEWIPYIAVVGEKEIESGKLAVTVRAESTQKEQKRVEMSAEELAERVRSE 597


>gi|302143811|emb|CBI22672.3| unnamed protein product [Vitis vinifera]
          Length = 448

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/419 (14%), Positives = 118/419 (28%), Gaps = 72/419 (17%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +  +   TG   M  P       +  E+   + +  E+  +     K
Sbjct: 5   PYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGK 64

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                       RP    + +  F       
Sbjct: 65  ELEEKLVV---------------------------------RPTSETIVNHMFTQWIHSY 91

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            DL P       N              L+ +     +               +  E +  
Sbjct: 92  RDL-PLMINQWANVTRWEMRTKPFVRTLEFLWQEGHTA----------HATPEEAEKEAL 140

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                +      E      I    S VE +              +     E      + +
Sbjct: 141 -QMIDVYTKFAYEQAAIPVITGRKSKVETFAG-----------AVRTYTIEAMMGDRKAL 188

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           + G     G  +S      F   +G+  ++   S+ + + R +  +I +  D  G++ P 
Sbjct: 189 QAGTSHNLGQNFSRAFGTQFTDENGQRQHIWQTSWAV-STRFIGGIIMTHGDDAGLMLPP 247

Query: 343 SVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLL 398
            +AP ++ +I I           +A   +   L      V  DD  ++  G +F   ++ 
Sbjct: 248 KIAPIQVVIIPIWKKADEKTGVLNAASSVTEVLKSANIKVKVDDSDQRTPGWKFNFWEMK 307

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRL-TGIREDM-------SLEEVINYASHRFSNNRPVL 449
           G PL++ +G + VS   V I  R   G +  +       S+  ++ Y   +    +  L
Sbjct: 308 GVPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSI--LVAYVKDKLDEIQSSL 364


>gi|115898425|ref|XP_786677.2| PREDICTED: similar to glutamyl-prolyl-tRNA synthetase
            [Strongylocentrotus purpuratus]
 gi|115974011|ref|XP_001188946.1| PREDICTED: similar to glutamyl-prolyl-tRNA synthetase
            [Strongylocentrotus purpuratus]
          Length = 1621

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/420 (12%), Positives = 102/420 (24%), Gaps = 71/420 (16%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
             G Y   P      + + A         G      P   S A L  E      +  E+  
Sbjct: 1166 SGCYVLRPWSYSIWEKIVAFFDAGIKELGVENTYFPIFVSQAALEREKEHIADFSPEVAW 1225

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E  M   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1226 VTRSGQSELAEPIAIRPTSETAMYTSYSKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR 1285

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                                                           +        H   
Sbjct: 1286 -----------------------------------------------TREFLWQEGHTAW 1298

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               +    +V+   +                       +     +  T +   +      
Sbjct: 1299 ANREECVEEVYTILELYAQVYEHLLAIPVVRGEKTLKEKFAGGDFTTTVEAFIKA----- 1353

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                  S R I+     + G  ++      F+  D   H     +      R +  +   
Sbjct: 1354 ------SGRAIQGATSHHLGQNFAKMFDIKFEDPDPNAHKYVFQNSWGITTRTIGVMCMV 1407

Query: 332  SHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              D +G++ P  VA  +  +I                 D C      L   G     D  
Sbjct: 1408 HGDDQGLVLPPRVACVQAIVIPCGITAKTTDEQKNKLLDKCHNYVKILKAGGIRAQSDLR 1467

Query: 385  GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                 G +F   +L G P+++ +G + +S  +     R  G +      + +   +    
Sbjct: 1468 DNYSPGWKFNHWELKGVPVRIEIGPRDMSKQEFIACRRDNGAKTTFPEAQSVAKVTELLD 1527


>gi|162316930|ref|YP_424303.2| prolyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|114152214|sp|Q2SSG0|SYP_MYCCT RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 474

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/410 (12%), Positives = 131/410 (31%), Gaps = 62/410 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  + +   + EE  +     +  P L    L+  E    D +  E+  +
Sbjct: 36  GTMIFRPYGYRIWELIQKYLDEEFKKVNVDNVYFPLLIPESLFNKEKDHIDGFSPEIATV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                      + +L     +  + E L
Sbjct: 96  T---------------------------------------RVGQKQLEENLFIRPTSEVL 116

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           M D +S ++            + + +R               +        H      + 
Sbjct: 117 MMDYFSNEINSYRDLPLIYNQWCNVMRWEKTTRPF-----LRTSEFLWQEGHTVHSSYNE 171

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E       +  +     E      I    +  E++     A      E L         
Sbjct: 172 AENFCLKILNIYE-KFAKEILLLPVICGKKTEKEKFA---GAKDTYTIESL--------M 219

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I +  D  
Sbjct: 220 FDGQALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALIMTHSDDN 278

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G++ P  ++P ++ +I I  + +      E I  +LS     +  D+  +  G + + A+
Sbjct: 279 GLVLPSKISPIQVQIIQI-KNTEQIDQVVEIIKDKLSD--YRIDVDNSDKSFGFKISEAE 335

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHRFSNN 445
           + G P+++ +G + + ++++ I  R     +  +  +++ +       + 
Sbjct: 336 IKGIPIRIEIGPRDLENNQITISRRDQQENKIKVDYKDIKSVVDQMIKDY 385


>gi|312135208|ref|YP_004002546.1| glycyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
 gi|311775259|gb|ADQ04746.1| glycyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
          Length = 434

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/435 (14%), Positives = 138/435 (31%), Gaps = 35/435 (8%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G I Q S    G+   + + PLG +  +N+  +  +   Q R   + +    L +  +
Sbjct: 13  RRGFIFQSSEIYGGLNSCWDYGPLGVEMKNNIKRLWWKANVQLRDDVVGLDSSILMNPKV 72

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG   ++   M        +         + + +               F  +   F
Sbjct: 73  WEASGHLSNFADPMADCKVCKKRW------RTDQLQEYKCPECGGELTEARMFNLMFKTF 126

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
              +     V+  R    +  +   +  + +        ++ +    R  +        +
Sbjct: 127 MGPVEEESAVVYLRPETAQGIFVNFVNVQQTMRKKLPFGIAQIGKSFRNEITPGNFIFRT 186

Query: 200 GPIGGDLSHEFIVL--ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                     F+     D         +    + +        + + +    +   A YA
Sbjct: 187 REFEQMEIEYFVKPGTDDYWHRHWIDQRINWYYKLGIRK----ENLRIREHGKDELAHYA 242

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E + ++ R            KYS      F     + +   +   
Sbjct: 243 KACVDIEYLFPMGWSELEGIANRTDFDLTQHQ---KYSGENLTYFDDETKQRYIPYVIEP 299

Query: 318 GIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKI 368
             G  R + A +  +++ + I             ++AP K ++  +   +++ +   ++I
Sbjct: 300 SAGVDRSLLAFLIDAYEYQQIDKDDFRVVLHLHPAIAPIKAAVFPLLKKEELVK-KAKEI 358

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L      V +D+ G  IG ++   D +G P  + V  + + D  V I+ R T  +  
Sbjct: 359 YNELKYKWI-VQYDESG-SIGKRYRRQDEIGTPFGITVDYQTLEDETVTIRDRDTMEQVR 416

Query: 429 MSLEEVINYASHRFS 443
           + ++E+I+Y   R  
Sbjct: 417 VHIKEIISYLEERIE 431


>gi|190348228|gb|EDK40650.2| hypothetical protein PGUG_04748 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 379

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 114/351 (32%), Gaps = 43/351 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
             + G   +LP G + ++ +   ++ +Q R G  E+  P +    LW  SG +D+Y  +M
Sbjct: 42  PVTPGSIFFLPHGTRIMNKLIQFMKHQQMRYGFEEVITPLIYKNQLWKTSGHWDNYRDDM 101

Query: 94  LRLA--------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            ++         D         P +      IF    +SY   P          R+E   
Sbjct: 102 FKVTGNVVHEHEDPQLHEYGLKPMNCPGHCVIFSKFERSYNEFPIRLSDFSSLHRNEASG 161

Query: 146 R-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              G+ R R F   D + F    +  +   +      L  +   G+ S  ++        
Sbjct: 162 ALSGLTRVRRFHQDDGHIFCE-FDQVEDEISNTVNLILESYKVFGIPSNEIKFTLSTRP- 219

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                        E +        +      +    +  +  +I     A Y    DV  
Sbjct: 220 -------------EDKYIGEISTWEKAEEKLSNVLTNSGNSWTINPGDGAFYGPKIDV-- 264

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAM 322
            +L D+  +  +V    ++    F    ++       +    G  ++  + +     G++
Sbjct: 265 -QLTDAFGKAHQVGTIQLD----FQLPARFD----LKYIDKHGSRENRPIMIHRAVFGSL 315

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
               A++    D     WP  + P +  +I +         A ++I  ++S
Sbjct: 316 ERFFAILL---DHYQGKWPFWLNPRQALIIPVNDSH---VSAAQEIKKQIS 360


>gi|170070377|ref|XP_001869557.1| prolyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167866293|gb|EDS29676.1| prolyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 489

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 86/230 (37%), Positives = 135/230 (58%), Gaps = 10/230 (4%)

Query: 2   RRSKYFLPILQENPRDAEIA-------SHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN 54
           R +K F P L   P++A +        S +LML  G+I Q   G +  +PL Q++L    
Sbjct: 3   RLTKIFQPTLI-VPKNAVVKNQDVTSKSQRLMLEQGLIRQAGNGTFYLMPLLQRSLQKAV 61

Query: 55  AIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
            ++     R   A ++++P L +A LW +SGR +S G E++R  DR+ K  I GPTHEE 
Sbjct: 62  DLVDHFMQRHASAQKLTLPILTAASLWRQSGRLESAGPELMRTTDRHGKQQILGPTHEES 121

Query: 114 MT-DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           +T  +      SYR  P   YQI  KFRDE++PRFG+MR++EFLMKD Y+FD+    ++ 
Sbjct: 122 ITALVASISPVSYRAFPLRLYQISTKFRDEMKPRFGLMRAKEFLMKDLYTFDVGRGEARE 181

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           +Y ++  +Y ++F  +G+  + +R ++G IGG  SHE+   ++ GE Q+ 
Sbjct: 182 TYEEVNEAYRKLFDAVGVGYVKVRGDTGTIGGSESHEYHFPSEVGEDQLV 231


>gi|218884312|ref|YP_002428694.1| prolyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
 gi|218765928|gb|ACL11327.1| prolyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
          Length = 479

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 147/414 (35%), Gaps = 63/414 (15%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           I    KG+Y W+P G KAL     II                    DL  ++G  ++Y  
Sbjct: 31  IRYPVKGMYVWMPYGLKALRLTQRII-------------------VDLLEKTGHQEAYFP 71

Query: 92  EMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            M+  +    +K  + G   E  + +   +   + R                        
Sbjct: 72  TMVPESVFSREKDFLQGFGGETFIVEGTMTRRFNERLFVR-------------------- 111

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
                      + +       + + K         +++          + PI        
Sbjct: 112 ----------PTSETVMYYMWNMWIKGRKDLPLKMYQVVNVFRYETKMTHPILRVREIMG 161

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ--WTAPYAATSDVHNEKLF 268
            + A T       ++  +   I      F+ +     IV+   W     A    +N    
Sbjct: 162 FIEAHTAHHSREEAEKQIIEAIGIYKEFFNRLQLPYFIVKTPPWDTFAGAE---YNYDFI 218

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             +P+ K     G+E+G +   G K++      F   DG++ YV    YG+ + RV+ AV
Sbjct: 219 TVMPDGK-----GLELGSVINLGQKFAGAFEIKFMDTDGEEKYVYQTCYGV-SERVLGAV 272

Query: 329 IESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWD-DMGE 386
           I    D  G+ +P  +AP ++ ++ I K  ++   +   KI + L   G  VF D D+  
Sbjct: 273 IGIHGDEVGLFFPPEIAPIQVVIVPIMKPGEKEILEYALKIGSMLESHGLRVFIDSDLEH 332

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             G ++   ++ G P ++ VG++ V  S V I  R    ++ + LEEV+     
Sbjct: 333 TPGWKYYYWEMKGVPTRIEVGAREVETSTVTIARRDKREKQVVRLEEVLETLRK 386


>gi|146413645|ref|XP_001482793.1| hypothetical protein PGUG_04748 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 379

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 114/351 (32%), Gaps = 43/351 (12%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
             + G   +LP G + ++ +   ++ +Q R G  E+  P +    LW  SG +D+Y  +M
Sbjct: 42  PVTPGSIFFLPHGTRIMNKLIQFMKHQQMRYGFEEVITPLIYKNQLWKTSGHWDNYRDDM 101

Query: 94  LRLA--------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            ++         D         P +      IF    +SY   P          R+E   
Sbjct: 102 FKVTGNVVHEHEDPQLHEYGLKPMNCPGHCVIFSKFERSYNEFPIRLSDFSSLHRNEASG 161

Query: 146 R-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              G+ R R F   D + F    +  +   +      L  +   G+ S  ++        
Sbjct: 162 ALSGLTRVRRFHQDDGHIFCE-FDQVEDEISNTVNLILESYKVFGIPSNEIKFTLSTRP- 219

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                        E +        +      +    +  +  +I     A Y    DV  
Sbjct: 220 -------------EDKYIGEISTWEKAEEKLSNVLTNSGNSWTINPGDGAFYGPKIDV-- 264

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG--KDHYVQMGSYGIGAM 322
            +L D+  +  +V    ++    F    ++       +    G  ++  + +     G++
Sbjct: 265 -QLTDAFGKAHQVGTIQLD----FQLPARFD----LKYIDKHGSRENRPIMIHRAVFGSL 315

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
               A++    D     WP  + P +  +I +         A ++I  ++S
Sbjct: 316 ERFFAILL---DHYQGKWPFWLNPRQALIIPVNDSH---VSAAQEIKKQIS 360


>gi|256269239|gb|EEU04564.1| YHR020W-like protein [Saccharomyces cerevisiae JAY291]
          Length = 688

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/420 (15%), Positives = 125/420 (29%), Gaps = 67/420 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      +N+     ++    G      P   S+  L  E    + +  E+  
Sbjct: 215 SGCYILRPPSYTIWENIQKWFDDKIKAIGVQNAYFPMFVSSRVLEKEKDHVEGFAPEV-- 272

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                                                              +        
Sbjct: 273 --------------------------------------------------AWVTRAGSSE 282

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLA 214
           L +       +       Y K   SY  +  +L   +  +R E   P     + EF+   
Sbjct: 283 LEEPIAIRPTSETVMYPYYAKWVQSYRDLPLKLNQWNSVVRWEFKHPQPFLRTREFL--W 340

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G T    +KD  +  +   +        L   V                    +    
Sbjct: 341 QEGHTAHLTAKDAEEEVLQILDFYAGVYEEL-LAVPVVKGRKTEKEKFAGGDFTTTCEGY 399

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIG-AMRVVAAVIESS 332
              + RGI+     + G  +S   + + +   G DH  +       G + RV+  ++   
Sbjct: 400 IPQTGRGIQGATSHHLGQNFSKMFNLSVENPLGSDHPKIFAYQNSWGLSTRVIGVMVMIH 459

Query: 333 HDGKGIIWPDSVAPFKISLINI---KAHDQVCR----DACEKIYARLSKVGCDVFWD-DM 384
            D KG++ P  V+ F+  +I +   K   +  R    +    + +RL KVG   F D + 
Sbjct: 460 SDNKGLVIPPRVSQFQSVVIPVGITKKTSEEQRKHIQETARSVESRLKKVGIRAFGDYND 519

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               G +F+  +L G P+++ +G K +  ++V +  R    +  +S +E+          
Sbjct: 520 NYTPGWKFSQYELKGIPIRIELGPKDIEKNQVVVVRRNDSKKYVVSFDELEARIPEILEE 579


>gi|187734550|ref|YP_001876662.1| prolyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
 gi|259511572|sp|B2UL92|SYP_AKKM8 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|187424602|gb|ACD03881.1| prolyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
          Length = 506

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 140/443 (31%), Gaps = 92/443 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   + +    TG      P L     L  E+   + +  E   +
Sbjct: 36  GCMVIKPWGYAIWELIQKDLDQRFKDTGHTNAYFPLLIPISYLEKEAEHAEGFATECAVV 95

Query: 97  ADRN--------------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
                                    +  +  PT E V+   F     SYR+LP    Q  
Sbjct: 96  THHRLEAQKDEATGKTRMIPTGELTEPFVIRPTSETVIGAAFARWTSSYRDLPLKVNQWC 155

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E+RPR  + R+ EFL ++ ++   T E +      M   Y               
Sbjct: 156 NVMRWEMRPRIFL-RTAEFLWQEGHTAHETREEAIEETLTMHKVY--------------- 199

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                       EF                     IP E T+ +               Y
Sbjct: 200 -----------EEFQ------------RDVLAIPTIPGEKTEAERFPGAEQT-------Y 229

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              + V +               + I+ G   + G  +S   +  F G D    +    S
Sbjct: 230 TVEAMVQD--------------RKAIQAGTSHFLGQNFSKSQNICFAGRDNTQQFAWTSS 275

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLS 373
           +G+ + R++ A+I    D  G++ P  VAP +I +I +   ++      D CE++   L 
Sbjct: 276 WGV-STRMIGALIMMHSDDDGLVCPPRVAPQQIVIIPVTPKEESRQAVLDHCEELARTLR 334

Query: 374 KVGC-----DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGIR 426
                     V  D      G++       G P+++ +G + +    V ++ R      +
Sbjct: 335 AKTFHGQPLRVLVDRRDLGGGAKKWEWVKKGVPVRLEIGPRDLEKGSVCLQRRDRPANEK 394

Query: 427 EDMSLEEVINYASHRFSNNRPVL 449
             +   E+I+ A+    + +  L
Sbjct: 395 SFVPETELIDTAADILQSIQDTL 417


>gi|20093982|ref|NP_613829.1| threonyl-tRNA synthetase [Methanopyrus kandleri AV19]
 gi|22654113|sp|Q8TXW5|SYT_METKA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19886944|gb|AAM01759.1| Threonyl-tRNA synthetase [Methanopyrus kandleri AV19]
          Length = 624

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/424 (15%), Positives = 125/424 (29%), Gaps = 38/424 (8%)

Query: 19  EIASHKLMLRTGMI--HQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           E  +H  ++R   I  H+ +   G   W P G      +   +       GA  +  P +
Sbjct: 194 EEPAHVKLMREKEICDHEPAADVGHVRWYPKGHVVRRCLAEYVENLMADLGAAVVETPVM 253

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
                       D +G+   R+    ++A++           +      S R+LP   Y+
Sbjct: 254 YDLSEDAIREHADKFGERQYRIR-AGNRALMLRYAACFGAFRLLADTTLSRRHLPLKIYE 312

Query: 135 IQLKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           +   FR E      G+ R R F M D ++     + +   + +     L +   LGL+  
Sbjct: 313 LSQSFRLEQSGEVVGLKRLRAFTMPDLHTVCADMDEAVEEFLEQAKLCLEVGLDLGLEYE 372

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +   +     +                       +     E    D    L  ++ +  
Sbjct: 373 VVFRTTEKFLKERKE-----------------VLEELAEAMEKAYGDAKPVLVEVLPERK 415

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
             +    D       DSL          I+V     FG         T+    G + +  
Sbjct: 416 HYWECKVDF---AFIDSLGRPIENPTVQIDVESGRRFG--------ITYADESGDERHPV 464

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH----DQVCRDACEKIY 369
           +                     K       +      L  ++A      +   +  EK++
Sbjct: 465 ILHCSPTGSLERVICAILEGQYKRFEQEGKLPTLPTWLSPVQARVIPVSEKVLEEAEKVF 524

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L   G  V  DD  E +G +   A     P  +++G + V    + +  R     ++ 
Sbjct: 525 EELKSEGFRVDLDDRDEPVGRKIRDAGEEWVPYVIVIGEEEVKKGTLSVTIREESTLKEQ 584

Query: 430 SLEE 433
             EE
Sbjct: 585 RREE 588


>gi|323333338|gb|EGA74735.1| YHR020W-like protein [Saccharomyces cerevisiae AWRI796]
          Length = 674

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/420 (15%), Positives = 125/420 (29%), Gaps = 67/420 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      +N+     ++    G      P   S+  L  E    + +  E+  
Sbjct: 215 SGCYILRPPSYAIWENIQKWFDDKIKAIGVQNAYFPMFVSSRVLEKEKDHVEGFAPEV-- 272

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                                                              +        
Sbjct: 273 --------------------------------------------------AWVTRAGSSE 282

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLA 214
           L +       +       Y K   SY  +  +L   +  +R E   P     + EF+   
Sbjct: 283 LEEPIAIRPTSETVMYPYYAKWVQSYRDLPLKLNQWNSVVRWEFKHPQPFLRTREFL--W 340

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G T    +KD  +  +   +        L   V                    +    
Sbjct: 341 QEGHTAHLTAKDAEEEVLQILDFYAGVYEEL-LAVPVVKGRKTEKEKFAGGDFTTTCEGY 399

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIG-AMRVVAAVIESS 332
              + RGI+     + G  +S   + + +   G DH  +       G + RV+  ++   
Sbjct: 400 IPQTGRGIQGATSHHLGQNFSKMFNLSVENPLGSDHPKIFAYQNSWGLSTRVIGVMVMIH 459

Query: 333 HDGKGIIWPDSVAPFKISLINI---KAHDQVCR----DACEKIYARLSKVGCDVFWD-DM 384
            D KG++ P  V+ F+  +I +   K   +  R    +    + +RL KVG   F D + 
Sbjct: 460 SDNKGLVIPPRVSQFQSVVIPVGITKKTSEEQRKHIHETARSVESRLKKVGIRAFGDYND 519

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               G +F+  +L G P+++ +G K +  ++V +  R    +  +S +E+          
Sbjct: 520 NYTPGWKFSQYELKGIPIRIELGPKDIEKNQVVVVRRNDSKKYVVSFDELEARIPEILEE 579


>gi|288561385|ref|YP_003424871.1| threonyl-tRNA synthetase ThrS [Methanobrevibacter ruminantium M1]
 gi|288544095|gb|ADC47979.1| threonyl-tRNA synthetase ThrS [Methanobrevibacter ruminantium M1]
          Length = 608

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/402 (15%), Positives = 135/402 (33%), Gaps = 37/402 (9%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           W P G+   D +   +       GA+ +  P     DL  ++ R  +      +      
Sbjct: 220 WYPKGRLVRDLLADYVYNFVVDLGAMPIETPIFY--DLANDAIREHAAKFGERQYKTATK 277

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSREFLMKD 159
           K ++           +      +++NLP   Y++    FR E R    G+ R R F M D
Sbjct: 278 KDLMLRFACCFGAFRVLGDSFLTWKNLPAKVYELSTYSFRFEKRGEVVGLKRLRAFTMPD 337

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +SF      +   ++      ++    L                D+++E I  A    T
Sbjct: 338 MHSFCADMPQALEEFDAQVDMCVQTGVDL----------------DVNYEAIFRA----T 377

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           + F  ++       ++      ++ +   + +    ++   D       D L        
Sbjct: 378 EDFYEENKEWMEATAKRIGKPLLLEI---LPERKHYWSCKIDF---AAIDYLGRPIENPT 431

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
             I+V     FG +Y           +   + + +     G++  V   +  +   +   
Sbjct: 432 VQIDVESGKRFGIEY-------IDEEENPQNPIILHCSPTGSVERVICSLLENTAKEDGK 484

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            P        S + I    +   +   ++  +++     V  D+  +++G +   A    
Sbjct: 485 APMLPTWLSPSQVRILPIGEKHLEYANQLADKIAAENIRVDLDNSDDRVGKKIRSASKEW 544

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            P  +++G K V +    +  R +G + DM+ EE+I     +
Sbjct: 545 VPYIIVIGDKEVENDVYSVTVRESGEKVDMTAEELIAEVKAK 586


>gi|255527652|ref|ZP_05394512.1| glycyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296186917|ref|ZP_06855318.1| glycyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255508665|gb|EET85045.1| glycyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296048631|gb|EFG88064.1| glycyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 463

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/439 (13%), Positives = 145/439 (33%), Gaps = 45/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++        + +    L ++++WV SG   ++   ++   
Sbjct: 34  WDYGPLGVELKNNVKKAWWQKFIHESKHNVGIDSAILMNSEVWVASGHVGNFTDPLMDCK 93

Query: 98  --------DRNDKAMIYGPTHEEVMTDIFRSHIKSYR--NLPFTFYQIQLKFRDELRPRF 147
                   D+  +  +     E+   D + +        +          K   ++R   
Sbjct: 94  ECKSRFRADKIVEEHMTKNGVEKASADGWSNEKLKQYIVDNEIECPNCGKKNFTDIRQFN 153

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSI 193
            + ++ + + +D+ S       +       F +  R                 R  +   
Sbjct: 154 LMFKTYQGVTEDSKSEIHLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEITPG 213

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                +          F       E   +  +   +F +     +  +I   +   E+ +
Sbjct: 214 NFTFRTREFEQMELEFFCKPGTDLEWHSYWKEQCWNFLLN-LGIEEKNIRFRDHDKEELS 272

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
               ATSD+     F    E   V+ R             +S    +       + +   
Sbjct: 273 HYSNATSDIEYLFPF-GWGELWGVADRTDYDLTQHQ---NHSGKDMSYLDPVTHEKYIPY 328

Query: 314 MGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDA 364
                +GA R V A +  ++D +          + +  ++AP K +++ +        + 
Sbjct: 329 CIEPSVGADRAVLAFLVDAYDEEELEGGDSRTVMHFHPAIAPVKAAILPLTKK---LSEK 385

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            E++Y  L K   +V +D+ G  IG ++   D  G P  + +    + D+ V ++ R T 
Sbjct: 386 AEEVYDELRK-DFNVEYDEAG-SIGKRYRRQDEAGTPYCITIDFDTLEDNTVTVRDRDTM 443

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M ++E+  +   +  
Sbjct: 444 DQFRMKVDELKKFIKEKME 462


>gi|315046950|ref|XP_003172850.1| bifunctional aminoacyl-tRNA synthetase [Arthroderma gypseum CBS
           118893]
 gi|311343236|gb|EFR02439.1| bifunctional aminoacyl-tRNA synthetase [Arthroderma gypseum CBS
           118893]
          Length = 604

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 136/445 (30%), Gaps = 82/445 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +    +  +      S P   S D L 
Sbjct: 101 QQVLLKGEMLDYYDVSGCFVLKPHSFFIWEQIQSWFDAKIKQMNVKNCSFPLFVSEDVLK 160

Query: 81  VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +    + A+       PT E VM   +   I+S+R+LP    Q  
Sbjct: 161 KEKDHIEGFAAEVAWVTHAGNSALEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 220

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT E +     ++                   
Sbjct: 221 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTKEEAHEEVLQILQ----------------- 263

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAP 255
                      H   V                      E      I    +  E++    
Sbjct: 264 -----------HYAHVY--------------------EELLAVPVIQGQKTDKEKFAGGL 292

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y  T + +              + RGI+ G     G  +S     T +    +    +  
Sbjct: 293 YTTTVEGYIPA-----------TGRGIQGGTSHGLGQNFSKMFGITVEDPSARPDEKKPP 341

Query: 316 SYGIGA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRD 363
            +          R +  ++    D +G++ P  VA  +  ++ +                
Sbjct: 342 LHVWQNSWGLSTRTIGVMVMIHGDNRGLVLPPRVADIQTVIVPVGLGAKTPDDERAAIMA 401

Query: 364 ACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             E I   LS  G  V  D       G +F   +L G PL++  G    + S V    R 
Sbjct: 402 EIEAIATVLSAAGVRVEVDKRDGYTPGWKFNDWELKGIPLRLEFGPGESAGSFVTTSRRD 461

Query: 423 --TGI-REDMSLEEVINYASHRFSN 444
                 +  ++++++          
Sbjct: 462 IAGKEGKSSIAIKDLGTAVPALLET 486


>gi|297564570|ref|YP_003683542.1| prolyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
 gi|296849019|gb|ADH62034.1| prolyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
          Length = 477

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/410 (15%), Positives = 122/410 (29%), Gaps = 62/410 (15%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +      TG      P       +  E+   + +  E+  +      
Sbjct: 41  PYGYALWEGLQRELDRRFKETGHHNAYFPLFIPMSFFQKEAEHVEGFAPELAVVT----- 95

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
                                                              E L +    
Sbjct: 96  -----------------------------------------------HAGGEELEEPLAV 108

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +     H +     SY  +   L   +  +R E        + EF+     G T   
Sbjct: 109 RPTSETIIGHMWASWIKSYRDLPQLLNQWNSVVRWELRTKLFLRTSEFL--WQEGHTAHA 166

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             ++  +      +     ++   + V  W      +        +    E      + +
Sbjct: 167 TQEEAEEETRRMLDIYAT-VLREYAAVPGWEGRKTESEKFAG-AEYTLTYEAMMRDGKAL 224

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           +     YFG K+S      F+  D +  Y    S+G  + R + A++ +  D KG+I P 
Sbjct: 225 QSCTSHYFGQKFSRAFEIKFQDKDLQTKYAYTTSWGF-STRAIGAIVMTHGDDKGLILPP 283

Query: 343 SVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLG 399
            +AP ++ ++ I   D       A E +   L   G  V  DD  +   G +F   +L G
Sbjct: 284 KLAPIQVVVVPIYKEDTRAKVLAAAEGLAQALKAAGIRVHLDDRDQYSPGFKFNEWELKG 343

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            P ++ +G + V      +  RL G +E + +EE+    +         L
Sbjct: 344 VPFRLELGPRDVDAQTAVLASRLGG-KETVPMEEIAPTLADSLEAFHQAL 392


>gi|148656401|ref|YP_001276606.1| proline--tRNA ligase [Roseiflexus sp. RS-1]
 gi|148568511|gb|ABQ90656.1| Proline--tRNA ligase [Roseiflexus sp. RS-1]
          Length = 571

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 3/184 (1%)

Query: 260 SDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           +D+   +  D             G  +G    +G +      ATF   +G    + M  +
Sbjct: 385 ADISLARTGDPCCGCNAPLRQTTGFIIGRDLRYGARSVQVSGATFLDREGVVRPITMSLF 444

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            I   RV+   +E   D  GI+W   +APF + L+ +   D   R A + +Y  L+  G 
Sbjct: 445 SIALERVLLVAVEQHCDQSGIVWSPEIAPFHVHLVRLGKQD-ATRQAADALYDELTAAGI 503

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V +DD  E  G +F  ADL+G PL++++G +F+SD  VE+K R +G+       E++  
Sbjct: 504 AVLYDDRDETAGVKFNDADLIGAPLRLVIGDRFLSDGLVEVKQRASGVIAKTPQSEIVAV 563

Query: 438 ASHR 441
               
Sbjct: 564 VRAL 567



 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 127/296 (42%), Gaps = 13/296 (4%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR +  F   L+++P +    + +LM+R G++   S G  + LP+G +AL  +  I+REE
Sbjct: 1   MRMTTLFGRTLRQSPSEINHPTLRLMVRAGLVR-LSSGALTLLPVGTRALRRIEMIVREE 59

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R G  E+ +P  +S           +    +L   D+  +++   PT E  +  +  +
Sbjct: 60  LTRIGLQEVYLPLFRSGAPLDPLFSSLASASSILHCTDQFGRSLSILPTDEAWIASLAAT 119

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I SYR LP   YQ++  +  + R  +        +    Y+ D +    + S   +  +
Sbjct: 120 EIASYRQLPVLLYQVRPTYCGDCRSSWLRAGVTAII----YALDHSDADVQESSALVRQA 175

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-PSENTDF 239
           + R+F R+ ++  P+ A   P+ GD +  ++ L++ G+  +          +  +  T  
Sbjct: 176 FTRLFERINVQVAPVEAGRDPVSGDEAFAYVALSEYGDVDLMRCDACGYAALREAARTAA 235

Query: 240 DDIISLNSIVEQWTAPYA----ATSDVHNEKLFDSLPE---NKRVSARGIEVGHIF 288
            +  +  +  ++   P A      + + +   F  +PE    K V     E G IF
Sbjct: 236 CEAFAPTTSSDESDRPEAFATPDCATIADLARFCGVPESATAKAVFFDSPERGLIF 291


>gi|255722445|ref|XP_002546157.1| prolyl-tRNA synthetase [Candida tropicalis MYA-3404]
 gi|240136646|gb|EER36199.1| prolyl-tRNA synthetase [Candida tropicalis MYA-3404]
          Length = 559

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 4/226 (1%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
           +  K +   L +     +I +H+L+ + G I     G+ +W   G    + +++IIR   
Sbjct: 11  KVPKLYGNQLSKFKYSKDIPTHELLTKLGFITYPRSGLVNWSKSGLLIQNKISSIIRSRM 70

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
           +  G  E+S+  +    LW E+GR+D   +    +        +  PT EE +TD    +
Sbjct: 71  DEIGFEELSLSLISYKKLWQETGRWDKSTE----IFKLEGDEYLLVPTAEEEITDYINKN 126

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++SY+ LP   YQI  KFR+E RPR G++R +EFLMKDAYSFDL    + ++Y K+  +Y
Sbjct: 127 LESYKQLPILMYQINPKFRNEKRPRGGLLRGKEFLMKDAYSFDLDESNAMNTYEKVVGAY 186

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            +IF  L +  +  +A+SG IGG LSHE+  + +TGE  VF   + 
Sbjct: 187 HKIFGDLKIPYVKAQADSGDIGGSLSHEWHYINETGEDTVFKCNEC 232



 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 8/147 (5%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD----GKDHYVQMGSYGIGA 321
           ++     + +  +   IEVGH FY G KYS P++                + MG YGIG 
Sbjct: 355 EICAQCEDGEISAQNAIEVGHTFYLGDKYSKPLNCNIDVPTAEGGMNKQTIMMGCYGIGI 414

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++AA+ + + D KG+ WP S+AP++++ + I   ++  ++    ++  L+    D   
Sbjct: 415 SRIIAAIAQINRDSKGLNWPRSIAPWEVTAVEIGQDEERTKE----VFKLLNHGKIDYRL 470

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGS 408
           DD  E +G +   ++L+G PL +I+G 
Sbjct: 471 DDRNESMGKKLKQSNLMGIPLSIILGK 497


>gi|269926770|ref|YP_003323393.1| prolyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790430|gb|ACZ42571.1| prolyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 483

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/421 (14%), Positives = 128/421 (30%), Gaps = 71/421 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G+  + P G    +N+  ++      TG +    P L    L   E+   + +       
Sbjct: 40  GMMVYRPYGYAIWENIQKLLDARFKATGVVNAYFPLLIPESLLRKEAEHVEGF------- 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                          +  +      E L
Sbjct: 93  ---------------------------------------------NPQVAWVTHGGNEEL 107

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +       +       Y+K   SY  +   +   +  +R E        + EF+     
Sbjct: 108 EERLAVRPTSEAIIMQMYSKWVQSYRDLPILINQWNSVVRWELHTRLFLRTAEFLWQ--- 164

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL----FDSLP 272
                            +E T     +  + + E    P        +E+          
Sbjct: 165 -----EGHTLHASAEEATERTLLMLEVYRSFLEEDLAIPVIPGRKTPSERFPGAAETYTV 219

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      R ++      F   ++     TF   DG+  Y    S+G+ + R +  +I   
Sbjct: 220 EALMGDGRALQSATSHDFADHFAKAFDITFLDKDGERKYGYTTSWGL-STRTIGGIIMVH 278

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-I 388
            D  G+I P  VAP ++ ++ I   ++      +  ++I   L      +  D   E+  
Sbjct: 279 GDDSGLIIPPKVAPIQVVVVPIWRSEEDKQKVLEHIDRIKEVLGDS-FRLHIDLSEEKTP 337

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           G +F   +L G P+++ VG + V++S V +  R    +  + L +++       ++ +  
Sbjct: 338 GWKFNEWELKGVPVRLEVGPRDVANSAVVLVRRDNRDKSQVPLNDLVVRLQQTLADIQQS 397

Query: 449 L 449
           L
Sbjct: 398 L 398


>gi|255711434|ref|XP_002552000.1| KLTH0B04906p [Lachancea thermotolerans]
 gi|238933378|emb|CAR21562.1| KLTH0B04906p [Lachancea thermotolerans]
          Length = 568

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 84/214 (39%), Positives = 119/214 (55%), Gaps = 5/214 (2%)

Query: 17  DAEIAS--HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPT 73
           DA  AS  H L+   G I Q   G+  WLPLG + L+ +  II+      G A E+S+  
Sbjct: 23  DAVKASSTHNLLQSLGYIKQTQSGLVHWLPLGLRTLNKITNIIKHRMETDGKAEEVSLSL 82

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L    LWV + R+D+   E+ +L D         PT EE +T +  S++ SY++LP T Y
Sbjct: 83  LSPKSLWVHTNRWDN--GELFKLKDSKGSDYCLAPTCEEEITSLIGSYVTSYKDLPMTVY 140

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           Q+  K+RDE RPR G++R REFLMKDAYSFD + E +  ++  M  +Y  IF  LG+  +
Sbjct: 141 QVGRKYRDEKRPRGGLLRGREFLMKDAYSFDASKEEAVRTFESMNHTYDLIFKDLGVPFV 200

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
              A+SG IGGD+S E+    ++GE  V      
Sbjct: 201 SAWADSGDIGGDMSKEYHYTHESGEDTVMACDSC 234



 Score = 89.8 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 8/212 (3%)

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F       E  +      MD  + S +   D  ++            A+  D    +L  
Sbjct: 310 FRANKSEDEMMLASVLRVMDCRLNSRSNYPDFPLNQYLKSNFSQLSDASIVDAEAGELCG 369

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           S  E    S R IEVGH F+ G KYS P++A F   +  + Y +MG YGIG  R+V A+ 
Sbjct: 370 SCEEGHLSSKRSIEVGHTFFLGQKYSEPLNAKFSTRENTEEYCEMGCYGIGVSRLVGAIA 429

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ-- 387
             + D  G+ WP +VAP++IS+   K       +   ++   LS  G +V+  +  E+  
Sbjct: 430 HVTRDDAGLRWPRAVAPYEISICAAK-----QDELVAEVEGLLSSWGREVWV-NRDEKAG 483

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           +G + A +  LG P+ VIVG K     ++E++
Sbjct: 484 LGRKIAASHSLGIPVCVIVGKKSWPCVEIEVR 515


>gi|167756667|ref|ZP_02428794.1| hypothetical protein CLORAM_02205 [Clostridium ramosum DSM 1402]
 gi|167702842|gb|EDS17421.1| hypothetical protein CLORAM_02205 [Clostridium ramosum DSM 1402]
          Length = 479

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/408 (15%), Positives = 127/408 (31%), Gaps = 57/408 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   + P      + +   + +                    + E+G  + Y   ++  +
Sbjct: 38  GFIIYRPYSYAMWEAIQQYMDKR-------------------FKETGHENVYMPMLIPQS 78

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               ++        E                                         + L 
Sbjct: 79  LLQKESDHVEGFAPECAI--------------------------------VTKGGLDDLE 106

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           ++      +       Y K+  SY  +          +R E          EF+      
Sbjct: 107 ENLIIRPTSETLFCEHYAKIVNSYRDLPKLYNQWCSVVRWEKTTRPFLRGSEFLWQ---E 163

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
              V  S+             ++D       +   T            +   ++ E    
Sbjct: 164 GHTVHASETEARAETLQMLEIYEDTAKNLLAIPMLTGRKTEREKFAGAEETYTI-EALMH 222

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + ++ G   YFG  ++      F   + K  YV   S+G+ + R++ A+I    D  G
Sbjct: 223 DGKALQSGTSHYFGQGFAKAFDMKFLSKENKLEYVYQTSWGV-STRLLGAIIMVHGDNNG 281

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           ++ P  VAP ++ +I I+       D   +I  +L + G  V  D   +  G +F+ A++
Sbjct: 282 LVLPPRVAPTQVMIIPIQQQKAGVLDKAYEIEKQLKEAGIRVKVDASDKSPGWKFSEAEM 341

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE-EVINYASHRFSN 444
            G PL++ +G K + ++   I  R  G +E  +L+ E+IN        
Sbjct: 342 RGVPLRLEIGPKDIENNACVIAKRNDGTKEKYALDQELINTIETLLDT 389


>gi|326387775|ref|ZP_08209381.1| prolyl-tRNA synthetase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207821|gb|EGD58632.1| prolyl-tRNA synthetase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 515

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/445 (14%), Positives = 138/445 (31%), Gaps = 94/445 (21%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + +  ++ E     G      P       +  E+   D + KEM  +
Sbjct: 39  GCMVIKPWGYGIWERIQKLMDERIKAAGVDNCYFPLFIPLSFFAREADHVDGFAKEMAVV 98

Query: 97  ADRN-----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                                ++ ++  PT E V+       I+S+R+LP    Q     
Sbjct: 99  THHRLIADPERGLIPDPEAKLEEPLVVRPTSETVIGAAMARWIQSWRDLPLLTNQWANVV 158

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E+R R  + R+ EFL ++ ++                             ++     +
Sbjct: 159 RWEMRTRMFL-RTSEFLWQEGHTAHADEA----------------------DAMTETLRA 195

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +    + + +                              +       E++    A  
Sbjct: 196 LEMYRSFAEDVLA--------------------------LPVVAGPKPENERFPGAVA-- 227

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                        E      + ++ G   Y GT ++      ++  +G+       S+G+
Sbjct: 228 ---------TYSIEAMMQDGKALQAGTSHYLGTTFAEAAGIRYQDKEGQQVLCHTTSWGV 278

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKV- 375
            + R++  VI +  D  G+  P  VAP +I ++ +      D+     CE++   L    
Sbjct: 279 -STRMIGGVIMTHGDDDGLRTPPQVAPHQIVILPMLRDNDGDEALLAYCEELRKALVSQS 337

Query: 376 ----GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIR 426
                  V  D    +  ++       G PL + +G +   + +V +  R       G  
Sbjct: 338 VFDEKVRVLLDKRPGKATAKRWGWVKKGVPLVLEIGGRDAENGQVSVVRRDRLWREDGKV 397

Query: 427 --EDMSLEEVINYASHRFSNNRPVL 449
             + ++ EE +  A+    + +  L
Sbjct: 398 DFKGIAREEFLATATSELESIQDAL 422


>gi|256370695|ref|YP_003108520.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri SMDSEM]
 gi|256009487|gb|ACU52847.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri SMDSEM]
          Length = 488

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 79/455 (17%), Positives = 158/455 (34%), Gaps = 72/455 (15%)

Query: 1   MRR-------SKYFLPI-LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDN 52
           M+        SK++  I L+ N  +      K  +R  MI +         P G    + 
Sbjct: 1   MKLTKRNENYSKWYNEIILKANIAE------KSDVRGCMILK---------PYGFAIWEK 45

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHE 111
           + +I+      TG   +  P L     L  E      + KE                   
Sbjct: 46  IQSILDRILKSTGHENVYFPLLIPKSFLSKEFNHIKGFAKE------------------C 87

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
            V+T     ++ +   +      +                      ++      +     
Sbjct: 88  AVITHYRLKNLNNKNLIVDQSSHLD---------------------EELIVRPTSETIIW 126

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           +SY +   SY  +       +  +R E  P     + EF+     G T     K+ ++  
Sbjct: 127 NSYKRWINSYRDLPILFNQWANIIRWEMRPRFFLRTSEFL--WQEGHTAHSTKKEAINHT 184

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
               N   + + +  SI        ++      EK F    E+     + I++    + G
Sbjct: 185 KKMLNIYTNFVENFFSIPVIQGIKTSSEKFAGAEKTF--CIESIMQDGKSIQIATSHFLG 242

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
             +S      +    GK  YV   S+GI + R++ A+I +  D KG+I P  +AP +I +
Sbjct: 243 QNFSKAFDVKYTTKKGKKKYVWATSWGI-STRLIGAMIMTHSDDKGLILPPKIAPIQIVI 301

Query: 352 INIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG 407
           I +    +           + A + K G ++ +D       G +F   ++ G P+++ +G
Sbjct: 302 IPVYKTQEQLHLIEKIVFPLKASIEKKGINIKYDKRTYYTPGWKFNEYEIQGIPIRITIG 361

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            K +    VE+  R T  ++++S++++  +     
Sbjct: 362 KKDLDRGTVEVVRRDTLEKKNISIKKLETFIPKLL 396


>gi|151943962|gb|EDN62255.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|190405804|gb|EDV09071.1| hypothetical protein SCRG_04726 [Saccharomyces cerevisiae RM11-1a]
 gi|207344767|gb|EDZ71797.1| YHR020Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259147048|emb|CAY80303.1| EC1118_1H21_0848p [Saccharomyces cerevisiae EC1118]
 gi|323308880|gb|EGA62116.1| YHR020W-like protein [Saccharomyces cerevisiae FostersO]
 gi|323348347|gb|EGA82595.1| YHR020W-like protein [Saccharomyces cerevisiae Lalvin QA23]
 gi|323354780|gb|EGA86614.1| YHR020W-like protein [Saccharomyces cerevisiae VL3]
          Length = 688

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/420 (15%), Positives = 125/420 (29%), Gaps = 67/420 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      +N+     ++    G      P   S+  L  E    + +  E+  
Sbjct: 215 SGCYILRPPSYAIWENIQKWFDDKIKAIGVQNAYFPMFVSSRVLEKEKDHVEGFAPEV-- 272

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                                                              +        
Sbjct: 273 --------------------------------------------------AWVTRAGSSE 282

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLA 214
           L +       +       Y K   SY  +  +L   +  +R E   P     + EF+   
Sbjct: 283 LEEPIAIRPTSETVMYPYYAKWVQSYRDLPLKLNQWNSVVRWEFKHPQPFLRTREFL--W 340

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G T    +KD  +  +   +        L   V                    +    
Sbjct: 341 QEGHTAHLTAKDAEEEVLQILDFYAGVYEEL-LAVPVVKGRKTEKEKFAGGDFTTTCEGY 399

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIG-AMRVVAAVIESS 332
              + RGI+     + G  +S   + + +   G DH  +       G + RV+  ++   
Sbjct: 400 IPQTGRGIQGATSHHLGQNFSKMFNLSVENPLGSDHPKIFAYQNSWGLSTRVIGVMVMIH 459

Query: 333 HDGKGIIWPDSVAPFKISLINI---KAHDQVCR----DACEKIYARLSKVGCDVFWD-DM 384
            D KG++ P  V+ F+  +I +   K   +  R    +    + +RL KVG   F D + 
Sbjct: 460 SDNKGLVIPPRVSQFQSVVIPVGITKKTSEEQRKHIHETARSVESRLKKVGIRAFGDYND 519

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               G +F+  +L G P+++ +G K +  ++V +  R    +  +S +E+          
Sbjct: 520 NYTPGWKFSQYELKGIPIRIELGPKDIEKNQVVVVRRNDSKKYVVSFDELEARIPEILEE 579


>gi|71665969|ref|XP_819949.1| prolyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70885272|gb|EAN98098.1| prolyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 810

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/420 (15%), Positives = 126/420 (30%), Gaps = 78/420 (18%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           +  MI  +   G Y   P        +           G  +   P   S   L  E   
Sbjct: 321 KAEMIEYYDVSGCYIIRPWAFFIWSRIQRFFGARIESMGVEDCYFPMFVSKSCLEREKDH 380

Query: 86  YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +    +  +       PT E VM   +   I+S+R+LP          R 
Sbjct: 381 VEGFAPEVAWVTKAGETDLEVPVAIRPTSETVMYPYYAKWIRSHRDLPVRLNMWNNVIRW 440

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E       +R+REFL ++        +  +    ++                        
Sbjct: 441 EFSHPTPFIRTREFLWQE---GHCAWQTEEECSQEVLEILDHY----------------- 480

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATS 260
                                         +  E      +    +  E++    Y  T 
Sbjct: 481 ----------------------------AAVYEELLAVPVVKGRKTEKEKFAGGYYTTTV 512

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA---DGKDHYVQMGSY 317
           + +   +            RG + G     G  +    + +F+     DG        S+
Sbjct: 513 ETYIAAVG-----------RGCQGGTSHNLGQNFGKMFNISFQDPEKNDGSTLIPWQNSW 561

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI----KAHDQV---CRDACEKIYA 370
           G+ + RV+  +     D  G++ P  VA  ++ +I +       D+      + C+ +  
Sbjct: 562 GL-STRVIGVMTMVHGDDSGMVLPPRVASVQVVIIPVGITKNTTDEERKSLLEGCKTLER 620

Query: 371 RLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            L   G     D       G +F   ++ G P++V +G + ++  K+ +  R  G R  +
Sbjct: 621 VLVSGGIRAKADLRDNYSPGWRFNHWEVKGVPVRVELGPRELASLKISLVLRHDGSRRSL 680


>gi|71653235|ref|XP_815258.1| prolyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70880301|gb|EAN93407.1| prolyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 810

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/419 (15%), Positives = 124/419 (29%), Gaps = 76/419 (18%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           +  MI  +   G Y   P        +         R G  +   P   S   L  E   
Sbjct: 321 KAEMIEYYDVSGCYIIRPWAFFIWSRIQKFFGARIERMGIEDCYFPMFVSKSCLEREKDH 380

Query: 86  YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +    +  +       PT E VM   +   I+S+R+LP          R 
Sbjct: 381 VEGFAPEVAWVTKAGETDLEVPVAIRPTSETVMYPYYAKWIRSHRDLPVRLNMWNNVIRW 440

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E       +R+REFL ++        +  +    ++                        
Sbjct: 441 EFSHPTPFIRTREFLWQE---GHCAWQTEEECSQEVLEILDHY----------------- 480

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                                         +  E      +    +  E++   Y  T+ 
Sbjct: 481 ----------------------------AAVYEELLAVPVVKGRKTEKEKFAGGYYTTTV 512

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA---DGKDHYVQMGSYG 318
                             RG + G     G  +    + +F+     DG        S+G
Sbjct: 513 ETYIAA----------IGRGCQGGTSHNLGQNFGKMFNISFQDPEKNDGSTLIPWQNSWG 562

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYAR 371
           + + RV+  +     D  GI+ P  VA  ++ +I +           +   + C+ +   
Sbjct: 563 L-STRVIGVMTMVHGDDSGIVLPPRVASVQVVIIPVGITKNTTDKERKSLLEGCKTLEKV 621

Query: 372 LSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           L   G     D       G +F   ++ G P++V +G + ++  K+ +  R  G R  +
Sbjct: 622 LVSGGIRAKADLRDNYSPGWRFNHWEVKGVPVRVELGPRELASLKISLVLRHDGSRRSL 680


>gi|282555140|gb|ADA82663.1| ProS [Candidatus Blochmannia sayi]
          Length = 76

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 51/76 (67%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          MR S+Y L  L+E P++    SH+LMLR G+I Q S G+Y+WLP G + L  +  IIREE
Sbjct: 1  MRISQYLLATLKETPKNCTTISHQLMLRAGLIRQVSSGLYTWLPTGLRVLRKIENIIREE 60

Query: 61 QNRTGAIEMSVPTLQS 76
           ++  AIE+S+P +Q 
Sbjct: 61 MSKINAIEISMPIVQP 76


>gi|6321808|ref|NP_011884.1| hypothetical protein YHR020W [Saccharomyces cerevisiae S288c]
 gi|731640|sp|P38708|YHI0_YEAST RecName: Full=Putative prolyl-tRNA synthetase YHR020W; AltName:
           Full=Proline--tRNA ligase; Short=ProRS
 gi|500692|gb|AAB68873.1| Yhr020wp [Saccharomyces cerevisiae]
 gi|285809922|tpg|DAA06709.1| TPA: hypothetical protein YHR020W [Saccharomyces cerevisiae S288c]
          Length = 688

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/420 (15%), Positives = 125/420 (29%), Gaps = 67/420 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      +N+     ++    G      P   S+  L  E    + +  E+  
Sbjct: 215 SGCYILRPPSYAIWENIQKWFDDKIKAIGVQNAYFPMFVSSRVLEKEKDHVEGFAPEV-- 272

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                                                              +        
Sbjct: 273 --------------------------------------------------AWVTRAGSSE 282

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLA 214
           L +       +       Y K   SY  +  +L   +  +R E   P     + EF+   
Sbjct: 283 LEEPIAIRPTSETVMYPYYAKWVQSYRDLPLKLNQWNSVVRWEFKHPQPFLRTREFL--W 340

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G T    +KD  +  +   +        L   V                    +    
Sbjct: 341 QEGHTAHLTAKDAEEEVLQILDFYAGVYEEL-LAVPVVKGRKTEKEKFAGGDFTTTCEGY 399

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIG-AMRVVAAVIESS 332
              + RGI+     + G  +S   + + +   G DH  +       G + RV+  ++   
Sbjct: 400 IPQTGRGIQGATSHHLGQNFSKMFNLSVENPLGSDHPKIFAYQNSWGLSTRVIGVMVMIH 459

Query: 333 HDGKGIIWPDSVAPFKISLINI---KAHDQVCR----DACEKIYARLSKVGCDVFWD-DM 384
            D KG++ P  V+ F+  +I +   K   +  R    +    + +RL KVG   F D + 
Sbjct: 460 SDNKGLVIPPRVSQFQSVVIPVGITKKTSEEQRKHIHETARSVESRLKKVGIRAFGDYND 519

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               G +F+  +L G P+++ +G K +  ++V +  R    +  +S +E+          
Sbjct: 520 NYTPGWKFSQYELKGIPIRIELGPKDIEKNQVVVVRRNDSKKYVVSFDELEARIPEILEE 579


>gi|293977850|ref|YP_003543280.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri DMIN]
 gi|292667781|gb|ADE35416.1| prolyl-tRNA synthetase [Candidatus Sulcia muelleri DMIN]
          Length = 489

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 84/454 (18%), Positives = 154/454 (33%), Gaps = 72/454 (15%)

Query: 3   RSKYFLPI-LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
            SK++  I L+ N  D      K  +R  M+ +         P G    + +  I+ +  
Sbjct: 11  YSKWYNEIILKANIAD------KSDVRGCMVIK---------PYGFSIWEKIKFILDKIL 55

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             TG   +  P L     +  E      + KE                    V+T     
Sbjct: 56  KSTGHKNVYFPLLIPKSYFSKEYNHIKGFAKE------------------CAVITHYRLK 97

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           +  +             K  DEL  R                   +     +SY +   S
Sbjct: 98  NFNN----KNIIVDKNSKLEDELIVRP-----------------TSETIIWNSYKRWINS 136

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +  R    +  +R E        + EF+     G T     K+ ++      N   +
Sbjct: 137 YRDLPIRFNQWANIIRWERRTRFFLRTSEFL--WQEGHTAHSTKKEAINQAKKIINIYTN 194

Query: 241 DIIS-LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
            + + +   V Q    Y+       E       E+     + +++    + G  +S    
Sbjct: 195 FLENFIAIPVIQGIKTYSEKFAGAEET---YCIESIMQDGKSLQIATSHFLGQNFSKAFD 251

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
             +    G   YV   S+GI + R++ A+I +  D  G+I P  +AP +I +I +    Q
Sbjct: 252 VRYTTEKGNKEYVWATSWGI-STRLIGAIIMTHSDDNGLILPPKIAPLQIVIIPVY-KTQ 309

Query: 360 VCRDACEKI----YARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              +  EK+       L K G  + +D       G +F   ++ G P+++ +G K +   
Sbjct: 310 EQLNLIEKLVLPLKESLEKRGISIKYDKRTYYTPGWKFNEYEIKGIPIRITIGKKDIDRG 369

Query: 415 KVEIKHRLTGIREDM---SLEEVINYASHRFSNN 445
            VE+  R T  ++ +    LE +I     +  +N
Sbjct: 370 TVEVVRRDTLEKKYIIINKLEFLIPKILSKIQDN 403


>gi|323304725|gb|EGA58486.1| YHR020W-like protein [Saccharomyces cerevisiae FostersB]
          Length = 687

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/420 (15%), Positives = 125/420 (29%), Gaps = 67/420 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      +N+     ++    G      P   S+  L  E    + +  E+  
Sbjct: 214 SGCYILRPPSYAIWENIQKWFDDKIKAIGVQNAYFPMFVSSRVLEKEKDHVEGFAPEV-- 271

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                                                              +        
Sbjct: 272 --------------------------------------------------AWVTRAGSSE 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLA 214
           L +       +       Y K   SY  +  +L   +  +R E   P     + EF+   
Sbjct: 282 LEEPIAIRPTSETVMYPYYAKWVQSYRDLPLKLNQWNSVVRWEFKHPQPFLRTREFL--W 339

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G T    +KD  +  +   +        L   V                    +    
Sbjct: 340 QEGHTAHLTAKDAEEEVLQILDFYAGVYEEL-LAVPVVKGRKTEKEKFAGGDFTTTCEGY 398

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIG-AMRVVAAVIESS 332
              + RGI+     + G  +S   + + +   G DH  +       G + RV+  ++   
Sbjct: 399 IPQTGRGIQGATSHHLGQNFSKMFNLSVENPLGSDHPKIFAYQNSWGLSTRVIGVMVMIH 458

Query: 333 HDGKGIIWPDSVAPFKISLINI---KAHDQVCR----DACEKIYARLSKVGCDVFWD-DM 384
            D KG++ P  V+ F+  +I +   K   +  R    +    + +RL KVG   F D + 
Sbjct: 459 SDNKGLVIPPRVSQFQSVVIPVGITKKTSEEQRKHIHETARSVESRLKKVGIRAFGDYND 518

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               G +F+  +L G P+++ +G K +  ++V +  R    +  +S +E+          
Sbjct: 519 NYTPGWKFSQYELKGIPIRIELGPKDIEKNQVVVVRRNDSKKYVVSFDELEARIPEILEE 578


>gi|320160257|ref|YP_004173481.1| putative prolyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
 gi|319994110|dbj|BAJ62881.1| putative prolyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
          Length = 545

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 84/189 (44%), Gaps = 2/189 (1%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +++   +   + PE +      RG+ V     F + +       +   +G+   V M  
Sbjct: 356 VAEIALAQPGYACPECREPLSETRGLTVARSIRFSSDFIRDRGLNYFDENGQSRPVWMEI 415

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           + +   R  A + E  HD  G+I P   +PF++ L+ +   +     A  ++  +L ++ 
Sbjct: 416 HTLNLTRTFACLAELRHDNYGLILPPQASPFEVHLVVLPGKENGVASALPEVLKQLEQMN 475

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            DV  DD  E  G +F  ADL+G P+++ +  + +    +E++ R    R+ + LE++ +
Sbjct: 476 LDVLVDDRSESPGVKFNDADLIGVPVRLTLSERSLQQGGIEVRKRWESERQTIPLEDLSD 535

Query: 437 YASHRFSNN 445
           +     S  
Sbjct: 536 WIRKSLSQR 544



 Score = 76.3 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%)

Query: 3  RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           ++ F    ++ P D E    + ++R G IH  + G     PLG +AL+ +     EE  
Sbjct: 7  FTQLFTQTRRQAPADLERPGQQFLVRAGYIHPVAGGTPFLPPLGTRALNRMRKTFLEEIK 66

Query: 63 RTGAIEMSVP 72
            G +E+ +P
Sbjct: 67 ALGGMEIHLP 76


>gi|290994751|ref|XP_002679995.1| predicted protein [Naegleria gruberi]
 gi|284093614|gb|EFC47251.1| predicted protein [Naegleria gruberi]
          Length = 528

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/443 (11%), Positives = 136/443 (30%), Gaps = 36/443 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            G + +  +G +   N+  +  +   + R   + +  P +  + +W +SG   ++   M+
Sbjct: 85  SGSFDYGTIGAQLKKNLKDLWWKDFVELRRDCVGIDTPIILHSKVWEKSGHIGNFTDPMV 144

Query: 95  RLA------------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
                           R           +          +    +      + +    D+
Sbjct: 145 TCLSCHSRFEVENLLKRQQNPETKPTIDKMETAKEKIEWMNQNSSQVTCPCEKKANSWDK 204

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--KSIPMRAESG 200
           +R    + ++    ++   +       +       F + +    +          +A   
Sbjct: 205 IRNFDMLFKTMYGPIEKEENTAYLRPETAQGIFINFNNVITTSRKRLPLGVGQIGKAFRN 264

Query: 201 PIGGDLSHEFIVLADTGETQVFCS----KDFMDFPIPSENTDFDDIISLNSIVEQWT--- 253
            I            +  E + FC      D+  + +   +            V  +T   
Sbjct: 265 EISPRDFIFRQREFEQMELEYFCHPTQSSDYFKYWVNFCHEWLLKYGLKKDNVRIYTKTQ 324

Query: 254 --APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y+  +            E   ++ R           +K              + + 
Sbjct: 325 DLAHYSKETSDIEYLFPFGWSEIWGIANRTDYDLQAHVQPSKKDKHTFEYVDPQTNEKYV 384

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGII---------WPDSVAPFKISLINIKAHDQVCR 362
             +     GA RV+ A +  +++ + +              +AP+K ++  ++       
Sbjct: 385 PHVVEPSAGADRVLFAFLYDAYNVEEVPGEEKRVVLKIHPDLAPYKFAVFPLQKKPVELM 444

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E+IY++L+ V     +D     IG  +   D +G P  + +  + + D+ V ++ R 
Sbjct: 445 SKAEEIYSQLASV-VSTDYDVSS-SIGVLYRRHDEIGTPYCITIDHQTLKDNTVTVRDRD 502

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           T  +  M++ +++    H   NN
Sbjct: 503 TMKQIRMNINDIVTNPLHLLKNN 525


>gi|168178808|ref|ZP_02613472.1| putative prolyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|226950957|ref|YP_002806048.1| putative prolyl-tRNA synthetase [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670058|gb|EDT82034.1| putative prolyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|226841905|gb|ACO84571.1| putative prolyl-tRNA synthetase [Clostridium botulinum A2 str.
           Kyoto]
          Length = 545

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 2/192 (1%)

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            +         +H +       + K     G  +G I            ATF    GK  
Sbjct: 353 DFKGIVGEFRKIHKDSKCTLCGD-KLEVNEGFVIGEIKKIEENLIKNECATFIDNKGKSK 411

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              +    +   ++++  IE + D  GI+WP   + FK+ +      D+      EKIY+
Sbjct: 412 PFTIYKGFMDIYKIISWTIEQNKDELGIVWPMETSAFKVIVTIANVKDEQQFKVGEKIYS 471

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L  +G     DD  E+ G +F  ADL G P+++ VG K + ++ VEIK R +  ++++ 
Sbjct: 472 SLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKENNVEIKLRNSKEKKEIP 530

Query: 431 LEEVINYASHRF 442
           ++++        
Sbjct: 531 IDQLQESIKSLL 542



 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 128/301 (42%), Gaps = 40/301 (13%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+P D E+ S KL+L+ G+I +   G+Y++ PLG + L+++  ++   
Sbjct: 1   MKLSKTLVHSLREDPADVEMDSQKLLLKGGLIAKVDSGLYAFTPLGYRFLEDIQKVVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P                Y   +  ++++N+  ++          +  +S
Sbjct: 61  SKKIGGSQISIP----------------YVNNLEEVSEKNNGFILNSNEETLSFINFLKS 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY+   +F  + +   G+M  R+ L  + +   L  E  K +  ++   
Sbjct: 105 SVTSYKQLPLFFYENNTEFSYKGKNNLGIMGGRQILR-EYFYMVLDGENDKFNKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM------------ 228
           Y  IF  + L+   +  E      D + +FI+  + G+ ++   K               
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNIGDLRIVACKSCNYGNEVNRASSIP 218

Query: 229 DFPIPSE-----NTDFDDIISLNSIVEQWTAPYAA-TSDVHNEKLFDSLPENKRVSARGI 282
           D+ I  +       +  DI ++  + E +  PY   T  +  +   DS+        R I
Sbjct: 219 DYQIEKDLKELNKIETLDIKTIEELGEFFKVPYRKFTKTIIYKCNNDSIVAVMVRGDRDI 278

Query: 283 E 283
           +
Sbjct: 279 D 279


>gi|307354084|ref|YP_003895135.1| threonyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
 gi|307157317|gb|ADN36697.1| threonyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
          Length = 610

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 142/416 (34%), Gaps = 45/416 (10%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           W+P G+   D ++  +       G + +  P +   D    +     +G+   R     +
Sbjct: 218 WMPKGKIIRDLLSDYVLGLVLNYGGMPVETPVMYDLDNHAINEHAGKFGERQYRFK-SGN 276

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPRF-GVMRSREFLMKD 159
           + M+        M  I      S   LP   Y++    FR E +    G+ R R F M D
Sbjct: 277 RNMMLRFAACFGMFSIMHDMHISPNTLPMKMYELSTYSFRHEQKGECIGLKRLRAFTMPD 336

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +S  L    +   + +  +   +    L      +   +     D            E 
Sbjct: 337 MHSMCLDMNQTLECFEEQLMMGWQTGKDLEYPLAAVFRCTEDFYKDH-----------EE 385

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
            V       + P+  E        +L+  V  W A         +    D          
Sbjct: 386 WVKKIVRMSEVPVLIE--------TLSDRVHYWIAKI-------DLAAIDGQGRPIENPT 430

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
             I+V     F  KY      + +  + +   +     G    RV+ A++E++   +  +
Sbjct: 431 VQIDVESAERFDIKYY-----SVRNEEVRPPIIHCSPTGS-IERVICALLENTASQEVPM 484

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            P  ++P ++ ++ + +      +   ++  +++  G    +DD  E +G +   A +  
Sbjct: 485 LPVWLSPTQVRILPVSSKH---TEYAGELCKKINGAGVRCDFDDREESVGKKIREAGMDW 541

Query: 400 FPLQVIVGSKFVSDSK--VEIKHRLTGI---REDMSLEEVINYASHRFSNN--RPV 448
            P  V+VG   +   K  V I+         +E+M+ E++I+       N   RP+
Sbjct: 542 VPYVVVVGDSEIESGKLPVTIRSMSKPKAPYKEEMTAEDLISKVKEDIGNRPFRPM 597


>gi|10580016|gb|AAG18956.1| proline-tRNA synthetase [Halobacterium sp. NRC-1]
          Length = 465

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/415 (16%), Positives = 127/415 (30%), Gaps = 68/415 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P     D L  E    + +  E+  +
Sbjct: 3   GFIVTRPRGYALWEAIQDNLDGWFKDTGVENAYFPMFIPEDYLEREKDIVEGFDPEVAWV 62

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D  D+ +   PT E ++       ++S+R+LP    Q     R            
Sbjct: 63  TQGGHDDLDQRLAVRPTSESIIAPYLSQWVRSHRDLPLRVNQWNSVVR------------ 110

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
                                    + +          + +     +     +       
Sbjct: 111 -------------------------WEATETKPFFRTKEFLWQEGHTAHATDEA-----A 140

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+T        + + D            I  L            A + +  E L    P
Sbjct: 141 WAETTLRLDQYHRLYEDVLG---------IPVLRGRKPDHDKFPGADTTMSVEALM---P 188

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           + K      ++ G   + G  ++     TF   D  +      S+G+ + R + A++ S 
Sbjct: 189 DGK-----SVQGGTSHHLGQSFADAFDITFADEDEAERTAYTTSWGL-SWRAIGALVMSH 242

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQ-IG 389
            D +G++ P +VAP ++ ++ I   D          +I A L   G  V +DD   +  G
Sbjct: 243 SDDQGLVLPPTVAPKQVVIVPIWQEDTKDDVEQYGAEIAAELEAQGVRVHFDDRDGRNPG 302

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +F   +L G P++  +G   V D +V + HR  G         + +        
Sbjct: 303 FKFNEWELNGVPVRFEIGPNEVEDDEVTVVHRPDGESTVEDRAAIADRVHDHLDE 357


>gi|20091717|ref|NP_617792.1| threonyl-tRNA synthetase [Methanosarcina acetivorans C2A]
 gi|22654112|sp|Q8TLX7|SYT_METAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19916894|gb|AAM06272.1| threonyl-tRNA synthetase [Methanosarcina acetivorans C2A]
          Length = 635

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/417 (14%), Positives = 129/417 (30%), Gaps = 45/417 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   + P G+     +   + +     GA+E+  P +   +        D +       
Sbjct: 234 SGNMRYYPKGRLVKSLLENYVLDVATEFGAMEVETPLMYDMNHPTLKKYLDRFPAR-QYS 292

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSRE 154
            + + + M            +      SY+NLP    ++    FR E R    G+ R R 
Sbjct: 293 IESDKRQMFLRFAACFGQFLMNHDMTISYKNLPLRMIEMTRYSFRKEQRGELVGLRRLRA 352

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++       +   + + +   + +   +G                      +  
Sbjct: 353 FTMPDMHTLCEDMNQAVSQFKEQYDLCIDVLENVG----------------------IHI 390

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D  E  +  ++DF +        +    ++   +VE W   +            D+L + 
Sbjct: 391 DDYEVAIRFTRDFYE-SNKELVVNMAKTVNKPVLVEMWDTRFFYFVLKFEFNFVDALAKA 449

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG--AMRVVAAVIESS 332
             +S   I+V        + +     ++  ADGK     +          R + A++E +
Sbjct: 450 SALSTVQIDV--------ENAERYDISYVNADGKLERPIVLHCSPSGAIERCIYALLEKA 501

Query: 333 HDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                      +  +       I    +      E++  +L    C V  DD    IG +
Sbjct: 502 AMETEEGKVPMLPVWLSPTQVRIVPISEKHLAFAEEVSKKL---DCRVDIDDRDLSIGKK 558

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED-----MSLEEVINYASHRFS 443
              A     P  V++G K + +  + +  R    +       ++ EE+        +
Sbjct: 559 VREAGREWVPYVVVIGDKEMEEGTINVTVRAESEQNKPSKVQITPEELNARIRGEIA 615


>gi|291537165|emb|CBL10277.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Roseburia
           intestinalis M50/1]
          Length = 494

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 111/317 (35%), Gaps = 30/317 (9%)

Query: 16  RDAEIASHKLMLRTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD      ++ L   M      +G+  +LP G      +   I+ ++ + G + +  P +
Sbjct: 181 RDHRKIGKEMHLF--MSDDLVGRGLPMFLPKGYTVWQELENYIKAKERKLGYLHVMTPCV 238

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            + +L+  SG +D Y + M    +   ++ +  P +      I+ + + SY++LP    +
Sbjct: 239 GTVNLYKTSGHWDHYKENMFPAMEVEGESFVLRPMNCPHHMMIYANRMHSYKDLPIRIGE 298

Query: 135 IQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           I   FR E      G+ R R F   DA+   +TPE  +  + K+       +    +   
Sbjct: 299 IAHDFRFEASGTLKGIERGRHFCQNDAH-LFVTPEQIESEFAKVVELIFDTYKDFNITDY 357

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                          + +   D  E          +    +     DDI    +      
Sbjct: 358 RCVLSLRD-----PEDKVKYHDDDEM--------WNNAENALRKVLDDIGIEYTEEIGEA 404

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           A Y    DV    +  ++     +S   ++    F    K+    + ++  +DG      
Sbjct: 405 AFYGPKLDV---NVKPAIGNEYTLSTCQLD----FCLPAKF----NLSYIDSDGTKKTPV 453

Query: 314 M-GSYGIGAMRVVAAVI 329
           +     +G++    A I
Sbjct: 454 VLHRAILGSLDRFMAYI 470


>gi|114152217|sp|Q98R27|SYP_MYCPU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 476

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 147/405 (36%), Gaps = 68/405 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   + P      +N+     +     G   + +P L    L   E    + +  E+  L
Sbjct: 35  GTLIFKPNSYGIWENIQLQFNKILKAKGIKNVYLPLLIPESLMKAEFEHIEGFAPELATL 94

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                    + +   PT E +    F++ I+SY++LP  + Q     R E +     +RS
Sbjct: 95  TKVGSKNLSENIYLRPTSEVLFQKFFKAEIESYKDLPKIYNQWANVIRWE-KTTNPFLRS 153

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ +S   +   ++    +M  +Y +   +                         
Sbjct: 154 TEFLWQEGHSSHESAIEARKFTREMLKTYCKFLRKF------------------------ 189

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        I+   +  E+++  Y+  +            
Sbjct: 190 ------------------------LAIPTIMGKKTPREKFSGAYSTYTL----------- 214

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   Y    +S      FK ++ K  +V   S+G+ + R++ A+I + 
Sbjct: 215 EAMMKDGKALQSGTTHYLAQNFSEAYDVNFKDSENKKQFVYQTSWGL-STRLIGAIIMTH 273

Query: 333 HDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            D +GII P  VAP +I ++               ++   L K    V  D   + +G +
Sbjct: 274 GDNRGIIIPPFVAPCQIDILAFNPRRSAEIEKFVNQVEKILKK-PFRVNVDRSDKTLGFK 332

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            + +++ G PL++ +G +   +++V +  R T  ++ +S+ +++ 
Sbjct: 333 ASQSEIQGVPLRIEIGPRDFENNQVTLVRRDTLEKQSVSINDIVK 377


>gi|161349985|ref|NP_279476.2| prolyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|169235366|ref|YP_001688566.1| prolyl-tRNA synthetase [Halobacterium salinarum R1]
 gi|114152200|sp|Q9HS52|SYP_HALSA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511601|sp|B0R3A3|SYP_HALS3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|167726432|emb|CAP13217.1| proline--tRNA ligase [Halobacterium salinarum R1]
          Length = 501

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/415 (16%), Positives = 127/415 (30%), Gaps = 68/415 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P     D L  E    + +  E+  +
Sbjct: 39  GFIVTRPRGYALWEAIQDNLDGWFKDTGVENAYFPMFIPEDYLEREKDIVEGFDPEVAWV 98

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D  D+ +   PT E ++       ++S+R+LP    Q     R            
Sbjct: 99  TQGGHDDLDQRLAVRPTSESIIAPYLSQWVRSHRDLPLRVNQWNSVVR------------ 146

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
                                    + +          + +     +     +       
Sbjct: 147 -------------------------WEATETKPFFRTKEFLWQEGHTAHATDEA-----A 176

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+T        + + D            I  L            A + +  E L    P
Sbjct: 177 WAETTLRLDQYHRLYEDVLG---------IPVLRGRKPDHDKFPGADTTMSVEALM---P 224

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           + K      ++ G   + G  ++     TF   D  +      S+G+ + R + A++ S 
Sbjct: 225 DGK-----SVQGGTSHHLGQSFADAFDITFADEDEAERTAYTTSWGL-SWRAIGALVMSH 278

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMGEQ-IG 389
            D +G++ P +VAP ++ ++ I   D          +I A L   G  V +DD   +  G
Sbjct: 279 SDDQGLVLPPTVAPKQVVIVPIWQEDTKDDVEQYGAEIAAELEAQGVRVHFDDRDGRNPG 338

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +F   +L G P++  +G   V D +V + HR  G         + +        
Sbjct: 339 FKFNEWELNGVPVRFEIGPNEVEDDEVTVVHRPDGESTVEDRAAIADRVHDHLDE 393


>gi|317136752|ref|XP_001727256.2| prolyl-tRNA synthetase YHR020W [Aspergillus oryzae RIB40]
          Length = 603

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 70/434 (16%), Positives = 134/434 (30%), Gaps = 84/434 (19%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G +   P      + +         + G    S P   S D L  E    + +  E+  
Sbjct: 119 SGCFILKPASYFIWEEIQDWFNARIKKIGVKNCSFPLFVSEDVLNREKDHIEGFAAEVAW 178

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 179 VTHAGSSPLEKKIAIRPTSETVMYPYYSKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLR 238

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT +G+      +   Y +I+                          
Sbjct: 239 TREFLWQEGHTAHLTKDGAHDEVMHILDLYAQIYE------------------------- 273

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      +    +  E++    Y  T + +       
Sbjct: 274 -----------------------ELLAVPVVKGQKTEKEKFAGGLYTTTVEGYIPA---- 306

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA-----MRVV 325
                  + RGI+ G     G  +S   + T +    K    +   +          R +
Sbjct: 307 -------TGRGIQGGTSHGLGQNFSKMFNITVEDPSTKPDEKKPPLHVWQNSWGLSTRTL 359

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------LSKVGCD 378
             ++    D +G++ P  VA  +  ++ +    +   +  EK+YA        L+  G  
Sbjct: 360 GVMVMIHSDNRGLVLPPRVADTQTVIVPVGITAKTSDEEREKLYAEIDGLINILTGAGVR 419

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMSLEEV 434
              D   G   G +F   +L G PL++  G        V    R       +  + + E+
Sbjct: 420 AISDKREGYSPGWKFNDWELRGVPLRIEFGPGESVGQFVTAARRDIPGKDGKSSIQISEL 479

Query: 435 ---INYASHRFSNN 445
              +     +   +
Sbjct: 480 STAVPALLEQIQKD 493


>gi|187776553|ref|ZP_02993026.1| hypothetical protein CLOSPO_00065 [Clostridium sporogenes ATCC
           15579]
 gi|187775212|gb|EDU39014.1| hypothetical protein CLOSPO_00065 [Clostridium sporogenes ATCC
           15579]
          Length = 545

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 2/196 (1%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +    +         +H +        NK     G  +G I            ATF    
Sbjct: 349 NYGRDFKGIVGEFRKIHKDSRCILCG-NKLEINEGFVIGEIKKIEENLIKNECATFIDNK 407

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK     +    +   ++++  IE + D  GI+WP   + FKI +      D+      E
Sbjct: 408 GKSKPFTIYKGFMDIYKIISWAIEQNKDELGIVWPMEASAFKIIVTIANEKDEQQFKVAE 467

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +IY+ L   G     DD  E+ G +F  ADL G P+++ VG K + ++ VEIK R    +
Sbjct: 468 EIYSNLVNSGISTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKENNVEIKLRNLKEK 526

Query: 427 EDMSLEEVINYASHRF 442
           +++ ++++        
Sbjct: 527 KEIPIDQLQESIKSLL 542



 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 122/273 (44%), Gaps = 39/273 (14%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           MR SK  +  L+E P D ++ S KL+L+ G+I +   G+Y++ PLG   L+N+  II + 
Sbjct: 1   MRLSKTLVHSLREYPADLDMDSQKLLLKGGLITKVDSGLYAFTPLGYSFLENIQKIIEDN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P                Y K+   ++ +N++ ++          +  ++
Sbjct: 61  SKKNGGFQISIP----------------YIKDFQDVSKKNNEFILDSNEENLRFINFLKN 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY+ LP  FY+   +   + +   G+M  ++ ++K+ +   L  E +K +  ++   
Sbjct: 105 NVTSYKQLPLFFYENNTEINYKGKNNLGIMCGKQ-VLKEHFYMMLDEENNKFNKEELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM------------ 228
           Y  IF  + L+   +  E      D + +FI+  + G++ +   K               
Sbjct: 164 YKDIFKIMNLQYHIVEDEL-----DGTIKFIIYDNIGDSHIVECKSCNYGNEINRALSIP 218

Query: 229 DFPIPSE-----NTDFDDIISLNSIVEQWTAPY 256
           D+ I  +       +  DI ++  + E +  PY
Sbjct: 219 DYNIEKDLKELNKIETPDIKTMEELGEFFKVPY 251


>gi|73670405|ref|YP_306420.1| threonyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
 gi|121729403|sp|Q467V2|SYT_METBF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72397567|gb|AAZ71840.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Methanosarcina
           barkeri str. Fusaro]
          Length = 635

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 131/417 (31%), Gaps = 45/417 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   + P G+     +   + +     GA+E+  P +   +        D +       
Sbjct: 234 SGNMRYYPKGRLIKALLENYVLDVATDFGAMEVETPIMYDMNHPTLKKYLDRFPAR-QYS 292

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSRE 154
            + + + M            +      SYRNLP    ++    FR E R    G+ R R 
Sbjct: 293 IESDKRQMFLRFAACFGQFLMNHDMTISYRNLPLRMIEMTRYSFRKEQRGELVGLRRLRA 352

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D +S     + +   + K +   + +   +G+                        
Sbjct: 353 FTMPDMHSLCEDMDQAVDQFKKQYDLCIDVLENIGIHIKDY------------------- 393

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              E  +  +KDF +        +    ++   +VE W   +            D+L + 
Sbjct: 394 ---EVAIRFTKDFYE-SNKELIVNMARTVNKPVLVEMWDTRFFYFVLKFEFNFVDALAKA 449

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG--AMRVVAAVIESS 332
             +S   I+V        + +     ++  ADGK     +          R + A++E +
Sbjct: 450 SALSTVQIDV--------ENAERYDISYVNADGKLERPTVLHCSPSGAIERCIYALLEKA 501

Query: 333 HDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                      +  +       I    +      E++  +L    C V  DD    IG +
Sbjct: 502 AMETEEGKVPMLPVWLSPTQVRIVPISEKHVAFAEEVSQKL---DCRVDIDDRDLSIGKK 558

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED-----MSLEEVINYASHRFS 443
              A     P  V++G K + D  + +  R    ++      ++ EE+ +      +
Sbjct: 559 VREAGREWVPYVVVIGDKEIEDGTINVTIRAESEQKKPKKVQITPEELNDRIKGEIA 615


>gi|301320495|gb|ADK69138.1| proline--tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 474

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/410 (12%), Positives = 122/410 (29%), Gaps = 62/410 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  + +   + EE  +     +  P L    L+  E    + +  E+  +
Sbjct: 36  GTMIFRPYGYRIWELIQKYLDEEFKKVNVDNVYFPLLIPESLFNKEKDHIEGFSPEIATV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                      + +L     +  + E +
Sbjct: 96  T---------------------------------------RVGQKKLEENLFIRPTSEVV 116

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           M D +S ++            + + +R               +        H      + 
Sbjct: 117 MMDYFSNEINSYRDLPLIYNQWCNVMRWEKTTRPF-----LRTSEFLWQEGHTVHSSYNE 171

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E       +  +     E      I    +  E++     A      E L         
Sbjct: 172 AENFCLKILNIYE-KFAKEILLLPVICGKKTEKEKFA---GAKDTYTIESL--------M 219

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I +  D  
Sbjct: 220 FDGQALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALIMTHSDDN 278

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+    S        I    + +      E I  +LS     +  D+  +  G + + A+
Sbjct: 279 GL-VLPSKISPIQIQIIQIKNTEQIDQVVENIKDKLSD--YRIDVDNSDKSFGFKISEAE 335

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHRFSNN 445
           + G P+++ +G + + ++++ I  R     +  +  ++V         + 
Sbjct: 336 IKGIPIRIEIGPRDLENNQITISRRDQQENKIKIDYKDVKKVVDQMIKDY 385


>gi|42560874|ref|NP_975325.1| prolyl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|81829401|sp|Q6MTR9|SYP_MYCMS RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|42492371|emb|CAE76967.1| proline-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
          Length = 474

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/410 (12%), Positives = 123/410 (30%), Gaps = 62/410 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  + +   + EE  +     +  P L    L+  E    + +  E+  +
Sbjct: 36  GTMIFRPYGYRIWELIQKYLDEEFKKVNVDNVYFPLLIPESLFNKEKDHIEGFSPEIATV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                      + +L     +  + E +
Sbjct: 96  T---------------------------------------RVGQKKLEENLFIRPTSEVV 116

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           M D +S ++            + + +R               +        H      + 
Sbjct: 117 MMDYFSNEINSYRDLPLIYNQWCNVMRWEKTTRPF-----LRTSEFLWQEGHTIHSSYNE 171

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E       +  +     E      I    +  E++     A      E L         
Sbjct: 172 AENFCLKILNIYE-KFAKEILLLPVICGKKTEKEKFA---GAKDTYTIESL--------M 219

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I +  D  
Sbjct: 220 FDGQALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALIMTHSDDN 278

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+    S        I    + +      E I  +LS    DV  D+  +  G + + A+
Sbjct: 279 GL-VLPSKISPIQIQIIQIKNTEQIDQVVENIKDKLSDYRIDV--DNSDKSFGFKISEAE 335

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHRFSNN 445
           + G P+++ +G + + ++++ I  R     +  +  ++V         + 
Sbjct: 336 IKGIPIRIEIGPRDLENNQITISRRDQQENKIKIDYKDVKKVVDQMIKDY 385


>gi|15828654|ref|NP_326014.1| prolyl-tRNA synthetase [Mycoplasma pulmonis UAB CTIP]
 gi|14089596|emb|CAC13356.1| PROLYL-TRNA SYNTHETASE (PROLINE--TRNA LIGASE) [Mycoplasma pulmonis]
          Length = 501

 Score =  131 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 147/405 (36%), Gaps = 68/405 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   + P      +N+     +     G   + +P L    L   E    + +  E+  L
Sbjct: 60  GTLIFKPNSYGIWENIQLQFNKILKAKGIKNVYLPLLIPESLMKAEFEHIEGFAPELATL 119

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                    + +   PT E +    F++ I+SY++LP  + Q     R E +     +RS
Sbjct: 120 TKVGSKNLSENIYLRPTSEVLFQKFFKAEIESYKDLPKIYNQWANVIRWE-KTTNPFLRS 178

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ +S   +   ++    +M  +Y +   +                         
Sbjct: 179 TEFLWQEGHSSHESAIEARKFTREMLKTYCKFLRKF------------------------ 214

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                                        I+   +  E+++  Y+  +            
Sbjct: 215 ------------------------LAIPTIMGKKTPREKFSGAYSTYTL----------- 239

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   Y    +S      FK ++ K  +V   S+G+ + R++ A+I + 
Sbjct: 240 EAMMKDGKALQSGTTHYLAQNFSEAYDVNFKDSENKKQFVYQTSWGL-STRLIGAIIMTH 298

Query: 333 HDGKGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            D +GII P  VAP +I ++               ++   L K    V  D   + +G +
Sbjct: 299 GDNRGIIIPPFVAPCQIDILAFNPRRSAEIEKFVNQVEKILKK-PFRVNVDRSDKTLGFK 357

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            + +++ G PL++ +G +   +++V +  R T  ++ +S+ +++ 
Sbjct: 358 ASQSEIQGVPLRIEIGPRDFENNQVTLVRRDTLEKQSVSINDIVK 402


>gi|207724051|ref|YP_002254449.1| threonyl-trna synthetase protein [Ralstonia solanacearum MolK2]
 gi|206589260|emb|CAQ36222.1| threonyl-trna synthetase protein [Ralstonia solanacearum MolK2]
          Length = 243

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 67/229 (29%), Gaps = 18/229 (7%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             +   + +  D       T           +    A Y    + H   + D++  + + 
Sbjct: 31  PDKRAGTDEIWDHAEEGLRTALRACGVEWEELPGEGAFYGPKVEYH---IKDAIGRSWQC 87

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGK 336
               +++      G        A +   D        +    +G+      ++  +H G 
Sbjct: 88  GTLQLDLVLPERLG--------AEYVAEDNSRKRPVMLHRAILGSFERFLGILLENHAGA 139

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
             +W        +S+           +  + +   L K G     D   E+I  +     
Sbjct: 140 LPLWLAPEQVVVMSIA------DAHAEYAQTVAQSLQKQGFRASADLRNEKITYKIREHS 193

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           L   P  V+VG K    ++V ++ R       M +   +    +  +N 
Sbjct: 194 LQKVPYLVVVGDKERDGNQVAVRARGNVDLGSMPISAFVERLQNDLANK 242


>gi|150403333|ref|YP_001330627.1| threonyl-tRNA synthetase [Methanococcus maripaludis C7]
 gi|166223356|sp|A6VJ50|SYT_METM7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150034363|gb|ABR66476.1| threonyl-tRNA synthetase [Methanococcus maripaludis C7]
          Length = 622

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 59/426 (13%), Positives = 131/426 (30%), Gaps = 48/426 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + W P G+   D ++  +       G + +  P +            D +G+   R 
Sbjct: 218 AGHFRWYPKGKLIRDLLSDYVYNLVVERGGMPVETPVMYDLQNNAIREHADKFGERQYRF 277

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSRE 154
               +K ++           + +      +++P   Y++    FR E R    G+ R R 
Sbjct: 278 KQ-GNKDLMLRFAACFGQFMMKKDMYLLPKHMPLKLYELSTYSFRYEQRGELVGLKRLRA 336

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++  +  + +  ++       L    + G       A       D   E     
Sbjct: 337 FTMPDMHTVCIDMKQAMEAFEDQLWMGL----KTGDDFKTPYAIIFRFTEDFFEE----- 387

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                          F +  E        ++  I+      +    D+    + DS    
Sbjct: 388 ----------NKDWFFGMAKEYKQKYGKDAILEILPGRKHYWVGKVDM---AVVDSFGRP 434

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                  I+V        + +          D K H + +     G++  V   +  +  
Sbjct: 435 IENPTVQIDV--------ESAERFGIVVHDGDKKVHPIILHCSPTGSVERVLCGLLENAY 486

Query: 335 GKGIIWPD-----SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              +          + P +  +I +    +   +   ++  +L   G    +DD  + +G
Sbjct: 487 LNTLENKPPALPTWLTPIQARVIPVGDKHE---EFALEVANKLRASGIRADFDDREDSMG 543

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-----REDMSLEEVINYASHRFSN 444
            +   A        V++G   +   K+ +  R         +E +++EE+I   +    +
Sbjct: 544 KKVRNAGTDWVNYVVVIGDNEMETGKLTVTIREESELKKAKKEALTVEELIEKITSDVKD 603

Query: 445 --NRPV 448
              RP+
Sbjct: 604 APKRPL 609


>gi|8039795|sp|Q58597|SYT_METJA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 620

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 140/426 (32%), Gaps = 48/426 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + W P G+   D +   +       GA+ +  P +            D +G+   R 
Sbjct: 216 PGHFRWYPKGKLMRDLLADYVYNLVVNMGAMPVETPIMYDLGNPAIREHADKFGERQYRF 275

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSRE 154
               +K ++           + +      R LP   Y++    FR E R    G+ R R 
Sbjct: 276 RQ-GNKELMLRFAACFGQFMMKKDMYLLPRYLPLKLYELSTYSFRYEQRGELVGLKRLRC 334

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++  L  E +   + K F   L+    L L           I       F    
Sbjct: 335 FTMPDMHTVCLNLEQAMEEFEKQFWECLKTGDDLNLSY-------SVIFRFTKDFFDEHR 387

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D              F I  E  +      +  I+ +    +    D+    + DSL   
Sbjct: 388 D------------WFFKIAKEYKNKYGKDVILEILPKRKHYWVGKVDI---AVIDSLGRP 432

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS-- 332
                  I+V        + +          +G+ + + +     G++  V   +     
Sbjct: 433 IENPTVQIDV--------ESAKRFDIKVHTNEGEIYPIILHCSPTGSIERVLCGLLEKAA 484

Query: 333 ---HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                G   + P  ++P ++ +I +    +   D   K+  +L +      +DD  E + 
Sbjct: 485 IEAEKGNAPMLPVWLSPIQVRVIPVA---ERHYDYALKVAEKLRENNIRADFDDREESVS 541

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGI---REDMSLEEVINYASHRFSN 444
            +   A     P  V++G + +      V I+ + T     +E M+L+E+I       +N
Sbjct: 542 KKIRNAGKEWVPYVVVIGDEEMESDKLTVTIREKSTLKKPYKEKMTLDELIERIKKETAN 601

Query: 445 --NRPV 448
              RP+
Sbjct: 602 YPYRPL 607


>gi|71899287|ref|ZP_00681448.1| Proline--tRNA ligase [Xylella fastidiosa Ann-1]
 gi|71730913|gb|EAO32983.1| Proline--tRNA ligase [Xylella fastidiosa Ann-1]
          Length = 261

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 64/184 (34%), Positives = 95/184 (51%), Gaps = 2/184 (1%)

Query: 258 ATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             +D+ N    D ++   K   ARGIEVGH+F  G KY+  M AT     GK   + MG 
Sbjct: 77  VVADIRNVIEGDRAVDGGKICIARGIEVGHVFQLGRKYAEAMKATVLDEYGKAVTMTMGC 136

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIYARLSKV 375
           YGIG  R+VAA IE +HD  GIIWP  +AP+++++  I    D V   A E + A L   
Sbjct: 137 YGIGVSRIVAAAIEQNHDVAGIIWPAPIAPWQVAVCVINPKKDPVIIAAAELLLAELQSA 196

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D   DD G + G  FA  +L+G P +++V  + ++    E + R T + E++    ++
Sbjct: 197 DVDTVLDDRGLRPGVMFADMELIGIPHRIVVSERGLAAGTYEYRARRTAMVENLDKTTLL 256

Query: 436 NYAS 439
               
Sbjct: 257 TRIK 260


>gi|284161285|ref|YP_003399908.1| threonyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
 gi|284011282|gb|ADB57235.1| threonyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
          Length = 618

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 129/417 (30%), Gaps = 46/417 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRYDSYGKEMLR 95
            G   + P G+     +   +  +    GA+E+  P +        +  RY         
Sbjct: 214 SGHLRYYPKGRLIKSLLEEFVTLKCIEYGAMEVETPIMYDRS--HPTLRRYLERFPARQY 271

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ-IQLKFRDELRPR-FGVMRSR 153
           +   + +              I    + +Y+NLP   Y+  +  FR E R    G+ R R
Sbjct: 272 IIKGDKREFFLRFAACFGQFLIAHDSVITYKNLPMKLYELTRYSFRKEQRGELVGLRRLR 331

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
            F M D ++F    E +K  +   +   + +   +G+                       
Sbjct: 332 AFTMPDMHTFVRDMEQAKQEFFNQYKLSVEVLKGIGI----------------------- 368

Query: 214 ADTGETQVFCSKDFMDFPIPSENTD-FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            D  + +V        +    E      DI+    +VE W   +            D+L 
Sbjct: 369 -DPEDYEVAVRVTKDFYEQNKEFIHSLVDILRKPILVEMWDQRFFYFVLKFEFNFVDALE 427

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG--AMRVVAAVIE 330
           +   +S   I+V        + +     ++   +G+     +    +     R + A++E
Sbjct: 428 KASALSTVQIDV--------ENAERYDISYVDENGEKKRPLILHCSLSGAIERCMYALLE 479

Query: 331 SSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            +H          +  +       +    +   D   ++   LS+ G     DD  E +G
Sbjct: 480 KAHMNMERGKLPMLPVWLSPTQVRVIPVSERYLDRAIEVANELSRRGIRADVDDRDETLG 539

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDS--KVEIK---HRLTGIREDMSLEEVINYASHR 441
            +   A     P   ++G   V      V I+         R  MS++E+       
Sbjct: 540 KKIRDAGREWIPYVAVIGEDEVKGGFLTVTIRAESTLKEQKRVKMSIDELAERVKKE 596


>gi|296242499|ref|YP_003649986.1| threonyl-tRNA synthetase editing domain-containing protein
           [Thermosphaera aggregans DSM 11486]
 gi|296095083|gb|ADG91034.1| Threonyl-tRNA synthetase editing domain protein [Thermosphaera
           aggregans DSM 11486]
          Length = 613

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 140/415 (33%), Gaps = 59/415 (14%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTG---AIEMSV--------PTLQSADLWVESGRYDSYG 90
           + P G   +++V     +  N  G      M          P  + A+L+    R    G
Sbjct: 218 YGPHGVVMMESVFRYSWKVANELGIPVFKVMGTNMFNLKERPVYEHAELF--GDRLYEVG 275

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG-V 149
            +        +   +           + R  + SY +LPF  +++   +R E R      
Sbjct: 276 LD--------EDRFVLRYAACHQQFAMLRDWVISYSHLPFGAFEVADSYRLEQRGEVALC 327

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F M D + F+   E +      +    L    +LG K + +   +     +   E
Sbjct: 328 FRLRKFYMPDLHIFNKNLEEAVRVSRIVQEKILEEAGKLGRKYVALYNVTSDFLENHRQE 387

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            +                       E    ++   L +++      +    + H   + D
Sbjct: 388 LL-----------------------EFVRRENYPVLLAVIPGGIYYWVLNVEYH---IID 421

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAA 327
           +L   + ++   I+VG+   F        + TF    G+ H+  +    I  G  R +  
Sbjct: 422 NLKRPREIATFQIDVGNGRRF--------NITFVDEKGEKHHPVIIHTAILGGVERYIYM 473

Query: 328 VIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           +++++   +       +  +   +   I    +   +   KI   L   G  V  DD  E
Sbjct: 474 ILDTAAIAEANGQTPYIPTWISPVQARIIPVSKEYVEHALKIAVELQNQGFRVDVDDRDE 533

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +G +   A     P  V+VG + V  + + ++ R +  ++ MSLEE        
Sbjct: 534 TLGKKIRDAGREWIPYIVVVGEREVKTNTLNVRIRRSNDQKAMSLEEFARILREE 588


>gi|209882409|ref|XP_002142641.1| prolyl-tRNA synthetase family protein [Cryptosporidium muris RN66]
 gi|209558247|gb|EEA08292.1| prolyl-tRNA synthetase family protein [Cryptosporidium muris RN66]
          Length = 687

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 140/436 (32%), Gaps = 69/436 (15%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ-SADLWV 81
           +++LR+ MI  +   G Y   P      + + +    +    G      P       L  
Sbjct: 205 QVILRSEMIDYYDVSGCYILRPWSYFIWETIKSKFDNKIKNYGVQNSYFPIFVTKQRLET 264

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +    +  +       PT E ++   +   I+S+R+LP    Q   
Sbjct: 265 EKSHVEGFSPEVAWVTRSGESDLAEPIAIRPTSETIIHPHYAKWIRSHRDLPLKLNQWTS 324

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R             EF     +         +                 G  +     
Sbjct: 325 AVR------------WEFKQPTPFIRTREFLWQE-----------------GHTAHATNE 355

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           E+  +   +  ++              +D +  PI         I  + S  E++     
Sbjct: 356 EATEMVRTILDDYAD----------IYQDLLAVPI---------IKGIKSESEKFAGA-- 394

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                    +   +PEN     R I+       G  +S      F+   G   +V   S+
Sbjct: 395 ----NETMTIEGFIPENG----RAIQAATSHNLGQNFSSMFGIEFEDEKGTKQFVYQTSW 446

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSK 374
           G+   R +  +I +  D  GII P  VAP ++ +I I       +  +  CE++   L +
Sbjct: 447 GL-TTRSIGVMIMTHGDNNGIILPPKVAPIQVVIIPIVFKSSITEEQKIMCEEVEKLLKE 505

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G  V  DD      G ++   ++ G  ++  +G K +    V I  R    ++D+ +  
Sbjct: 506 EGIRVHIDDRPNYTPGWKYNHWEVKGVCIRAEIGPKDIESKSVRIVIRDNRAKKDIPISC 565

Query: 434 VINYASHRFSNNRPVL 449
           +         + +  L
Sbjct: 566 LQKEIPELLEDLQKRL 581


>gi|170756076|ref|YP_001783145.1| putative prolyl-tRNA synthetase [Clostridium botulinum B1 str.
           Okra]
 gi|169121288|gb|ACA45124.1| putative prolyl-tRNA synthetase [Clostridium botulinum B1 str.
           Okra]
          Length = 545

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 2/196 (1%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +    +         +H +       + K     G  +G I            ATF    
Sbjct: 349 NYGRDFKGIVGEFRKIHRDSKCILCGD-KLEVNEGFVIGEIKKIEENLIKNECATFIDNK 407

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK     +    +   ++++  IE + D  GI+WP   + FK+ +      D+      E
Sbjct: 408 GKSKPFTIYKGFMDIYKIISWAIEQNKDELGIVWPMETSAFKVIVTIANVKDEQQFKVGE 467

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           KIY+ L  +G     DD  E+ G +F  ADL G P+++ VG K + ++ VEIK R +  +
Sbjct: 468 KIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKENNVEIKLRNSKEK 526

Query: 427 EDMSLEEVINYASHRF 442
           +++ ++++        
Sbjct: 527 KEIPIDQLQESIKSLL 542



 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 127/301 (42%), Gaps = 40/301 (13%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+P D E+ S KL+L+ G+I +   G+Y++ PLG + L+++  ++   
Sbjct: 1   MKLSKTLVHSLREDPADVEMDSQKLLLKGGLIAKVDSGLYAFTPLGYRFLEDIQKVVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P                Y   +  ++++N+  ++          +  +S
Sbjct: 61  SKKIGGSQISIP----------------YVNNLEEVSEKNNGFILNSNEETLSFINFLKS 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY+   +F  + +   G+M  R+ L  + +   L  E  K +  ++   
Sbjct: 105 SVTSYKQLPLFFYENNTEFSYKGKNNLGIMGGRQILR-EYFYMVLDGENDKFNKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM------------ 228
           Y  IF  + L+   +  E      D + +FI+  + G+  +   K               
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNIGDLHIVACKSCNYGNEINRASSIP 218

Query: 229 DFPIPSE-----NTDFDDIISLNSIVEQWTAPYAA-TSDVHNEKLFDSLPENKRVSARGI 282
           D+ I  +       +  DI ++  + E +  PY   T  +  +   DS+        R I
Sbjct: 219 DYQIEKDLKELNKIETPDIKTIEELGEFFKVPYRKFTKTIIYKCNNDSIVAVMVRGDRDI 278

Query: 283 E 283
           +
Sbjct: 279 D 279


>gi|148381445|ref|YP_001255986.1| putative prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC
           3502]
 gi|153934131|ref|YP_001385820.1| putative prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC
           19397]
 gi|153935851|ref|YP_001389227.1| putative prolyl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|148290929|emb|CAL85065.1| prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|152930175|gb|ABS35675.1| putative prolyl-tRNA synthetase [Clostridium botulinum A str. ATCC
           19397]
 gi|152931765|gb|ABS37264.1| putative prolyl-tRNA synthetase [Clostridium botulinum A str. Hall]
          Length = 545

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 81/208 (38%), Gaps = 3/208 (1%)

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--PENKRVSARGIEVGHIFYFGTKY 294
              ++       V           +      +       +K     G  +G I       
Sbjct: 336 IGANETGYHYENVNYERDFKGIVGEFRKIHKYSKCILCGDKLEVNEGFVIGEIKKIEENL 395

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                ATF    GK     +    +   ++++  IE + D  GI+WP   + FK+ +   
Sbjct: 396 IKNECATFIDNKGKSKPFTIYKGFMDIYKIISWTIEQNKDELGIVWPMETSAFKVIVTIA 455

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              D+      EKIY+ L  +G     DD  E+ G +F  ADL G P+++ VG K + ++
Sbjct: 456 NVKDEQQFKVGEKIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKEN 514

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            VEIK R +  ++++ ++++        
Sbjct: 515 NVEIKLRNSKEKKEIPIDQLQESIKSLL 542



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 127/301 (42%), Gaps = 40/301 (13%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+P D E+ S KL+L+ G+I +   G+Y++ PLG + L+++  ++   
Sbjct: 1   MKLSKTLVHSLREDPADVEMDSQKLLLKGGLIAKVDSGLYAFTPLGYRFLEDIQKVVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P                Y   +  ++++N+  ++          +  +S
Sbjct: 61  SKKIGGSQISIP----------------YVNNLEEVSEKNNGFILNFNEETLSFINFLKS 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY+   +F  + +   G+M  R+ L  + +   L  E  K +  ++   
Sbjct: 105 SVTSYKQLPLFFYENNTEFSYKGKNNLGIMGGRQILR-EYFYMVLDGENDKFNKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM------------ 228
           Y  IF  + L+   +  E      D + +FI+  + G+  +   K               
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNIGDLHIVACKSCNYGNEVNRASSIP 218

Query: 229 DFPIPSE-----NTDFDDIISLNSIVEQWTAPYAA-TSDVHNEKLFDSLPENKRVSARGI 282
           D+ I  +       +  DI ++  + E +  PY   T  +  +   DS+        R I
Sbjct: 219 DYQIEKDLKELNKIETPDIKTIEELGEFFKVPYRKFTKTIIYKCNNDSIVAVMVRGDRDI 278

Query: 283 E 283
           +
Sbjct: 279 D 279


>gi|71748872|ref|XP_827775.1| prolyl-tRNA synthetase [Trypanosoma brucei TREU927]
 gi|70833159|gb|EAN78663.1| prolyl-trna synthetase, putative [Trypanosoma brucei]
          Length = 808

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/437 (15%), Positives = 119/437 (27%), Gaps = 78/437 (17%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           +  MI  +   G Y   P       +V           G  +   P   S   L  E   
Sbjct: 319 KAEMIEYYDVSGCYIMRPWSFFIWKSVQKFFGSRIEAMGVEDCYFPMFVSKTCLEREKDH 378

Query: 86  YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +    +  +       PT E VM   +   I+S+R+LP          R 
Sbjct: 379 IEGFAPEVAWVTKAGESDLEVPVAIRPTSETVMYPYYAKWIRSHRDLPVRLNAWNSVVR- 437

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                       EF     +         +                           +  
Sbjct: 438 -----------WEFSHPMPFIRTREFLWQEGHCAWQ---------------------TEE 465

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                  E +       T +             E                    Y  T +
Sbjct: 466 ECSREVLEILDHYAAVYTDLLAVPVVKGKKTEKEK--------------FAGGYYTTTVE 511

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIG 320
            +   +            RG + G     G  +    +  F+  D   D  +       G
Sbjct: 512 TYIAAVG-----------RGCQGGTSHNLGQNFGKMFNICFQDPDKNDDSTLIPWQNSWG 560

Query: 321 -AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-------VCRDACEKIYARL 372
            + RV+   I    D +GI+ P  VA  ++ +I +            V  D C+ +   L
Sbjct: 561 LSTRVIGVTIMVHGDDRGIVLPPRVACLQVVIIPVGITKDTRQEQRNVLLDGCKALEGEL 620

Query: 373 SKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS- 430
              G  V  D       G +F   +L G P++V +G K +   ++ +  R  G R  +  
Sbjct: 621 RTAGIRVKADLRNNYSPGWRFNHWELKGVPVRVELGPKEMETKQLSLVLRCDGQRRSVPW 680

Query: 431 ---LEEVINYASHRFSN 444
              + E ++   +   N
Sbjct: 681 DGRIAETMSDLLNEIHN 697


>gi|322807831|emb|CBZ05406.1| prolyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 545

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 2/196 (1%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +    +         +H +       + K     G  +G I            ATF    
Sbjct: 349 NYGRDFKGIVGEFRKIHKDSKCILCGD-KLEVNEGFVIGEIKKIEENLIKNECATFIDNK 407

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK     +    +   ++++ VIE + D  GI+WP   + FK+ +      D+      E
Sbjct: 408 GKSKPFTIYKGFMDIYKIISWVIEQNKDELGIVWPMETSAFKVIVTIANVKDEQQFKVGE 467

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           KIY+ L  +G     DD  E+ G +F  ADL G P+++ VG K + ++ VEIK R +  +
Sbjct: 468 KIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKENNVEIKLRNSKEK 526

Query: 427 EDMSLEEVINYASHRF 442
           +++ ++++        
Sbjct: 527 KEIPIDQLQESIKSLL 542



 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 127/301 (42%), Gaps = 40/301 (13%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+  D E+ S KL+L+ G+I +   G+Y++ PLG + L+++  I+   
Sbjct: 1   MKLSKTLVHSLREDLADVEMDSQKLLLKGGLIAKVDSGLYAFTPLGYRFLEDIQKIVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P                Y   +  ++++N+  ++          +  +S
Sbjct: 61  SKKIGGSQISIP----------------YVNNLEEVSEKNNGFILNFNEETLSFINFLKS 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + SY+ LP  FY+   +F  + +   G+M  R+ L  + +   L  E  K +  ++   
Sbjct: 105 SVTSYKQLPLFFYENNTEFSYKGKNNLGIMGGRQILR-EYFYMVLDGENDKFNKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM------------ 228
           Y  IF  + L+   +  E      D + +FI+  + G++ +   K               
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNIGDSHIVACKSCNYGNEINRASSIP 218

Query: 229 DFPIPSE-----NTDFDDIISLNSIVEQWTAPYAA-TSDVHNEKLFDSLPENKRVSARGI 282
           D+ I  +       +  DI ++  + E +  PY   T  +  +   DS+        R I
Sbjct: 219 DYQIEKDLKELNKIETPDIKTIEELGEFFKVPYRKFTKTIIYKCNNDSIVAVMVRGDRDI 278

Query: 283 E 283
           +
Sbjct: 279 D 279


>gi|261333461|emb|CBH16456.1| bifunctional aminoacyl-tRNA synthetase, putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 808

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/437 (15%), Positives = 119/437 (27%), Gaps = 78/437 (17%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           +  MI  +   G Y   P       +V           G  +   P   S   L  E   
Sbjct: 319 KAEMIEYYDVSGCYIMRPWSFFIWKSVQKFFGSRIEAMGVEDCYFPMFVSKTCLEREKDH 378

Query: 86  YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +    +  +       PT E VM   +   I+S+R+LP          R 
Sbjct: 379 IEGFAPEVAWVTKAGESDLEVPVAIRPTSETVMYPYYAKWIRSHRDLPVRLNAWNSVVR- 437

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                       EF     +         +                           +  
Sbjct: 438 -----------WEFSHPMPFIRTREFLWQEGHCAWQ---------------------TEE 465

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                  E +       T +             E                    Y  T +
Sbjct: 466 ECSREVLEILDHYAAVYTDLLAVPVVKGKKTEKEK--------------FAGGYYTTTVE 511

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIG 320
            +   +            RG + G     G  +    +  F+  D   D  +       G
Sbjct: 512 TYIAAVG-----------RGCQGGTSHNLGQNFGKMFNICFQDPDKNDDSTLIPWQNSWG 560

Query: 321 -AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-------VCRDACEKIYARL 372
            + RV+   I    D +GI+ P  VA  ++ +I +            V  D C+ +   L
Sbjct: 561 LSTRVIGVTIMVHGDDRGIVLPPRVACLQVVIIPVGITKDTRQEQRNVLLDGCKALEGEL 620

Query: 373 SKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS- 430
              G  V  D       G +F   +L G P++V +G K +   ++ +  R  G R  +  
Sbjct: 621 RTAGIRVKADLRNNYSPGWRFNHWELKGVPVRVELGPKEMETKQLSLVLRCDGQRRSVPW 680

Query: 431 ---LEEVINYASHRFSN 444
              + E ++   +   N
Sbjct: 681 DGRIAETMSDLLNEIHN 697


>gi|164422625|ref|XP_958617.2| hypothetical protein NCU09892 [Neurospora crassa OR74A]
 gi|157069749|gb|EAA29381.2| predicted protein [Neurospora crassa OR74A]
          Length = 631

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 90/264 (34%), Positives = 135/264 (51%), Gaps = 10/264 (3%)

Query: 2   RRSKYFLPILQ-ENPR--DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIR 58
           R SK ++P      P   DA    H  ++R G + Q   GI+  LPLG++  D V  ++ 
Sbjct: 94  RLSKVWIPSGGFAVPGVEDA----HSKLVRAGFLRQSHAGIFHMLPLGKRVQDKVERLVA 149

Query: 59  EEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           +    +  A  +S+ ++ S  LW  SGR  +   E+ R  DR   A +  PTHEE +T +
Sbjct: 150 KHMEESLAASRVSLSSISSEALWERSGRLPNIAPELFRFPDRKGSAYLLSPTHEEEITYL 209

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
               ++SY++LP   YQI  KFRDELRPR G++R REF+MKD Y+FD     +  +Y K+
Sbjct: 210 VAQTVRSYKDLPLRLYQITRKFRDELRPRHGLLRGREFIMKDLYTFDTDLTSALDTYEKV 269

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             +Y RIF+ + L  +  +A SG +GGDLSHE+ + +  GE  +       D+ I  E  
Sbjct: 270 RAAYSRIFNDMKLPVLAAKASSGDMGGDLSHEYHLPSPFGEDNIITCGSC-DYIIN-EEI 327

Query: 238 DFDDIISLNSIVEQWTAPYAATSD 261
               +       +      A T D
Sbjct: 328 ATTKVAHEICQADHVGVWRAITKD 351



 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 20/150 (13%)

Query: 269 DSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGAD---------------GKDH 310
           D+ P+         + +E+GH F+ GT+YS P+ A                      K  
Sbjct: 477 DNCPQCSSGTLNVQKAMELGHTFHLGTRYSQPLGAKISLPPPSSSEAKPSTGDSGTSKTV 536

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            +QMG +GIG  RV+ AV E   D KG+ WP ++AP+   ++  + +     +  ++I  
Sbjct: 537 SMQMGCHGIGISRVIGAVAEHLADDKGLNWPVAIAPYTCIVVFAEDNYDDAVEVYKRILN 596

Query: 371 RL--SKVGCDVFWDDMGEQIGSQFAVADLL 398
            +       D+  DD  + +  +   ADL+
Sbjct: 597 GIGDQDERLDIILDDRQKSLPWKLKDADLI 626


>gi|330935397|ref|XP_003304947.1| hypothetical protein PTT_17681 [Pyrenophora teres f. teres 0-1]
 gi|311318137|gb|EFQ86884.1| hypothetical protein PTT_17681 [Pyrenophora teres f. teres 0-1]
          Length = 562

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 69/429 (16%), Positives = 122/429 (28%), Gaps = 80/429 (18%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      +N+      +           P   SAD L  E    + +  E+  
Sbjct: 78  AGCYILEPSSYAIWENIKTWFDAQIKTLKVRNAYFPIFISADNLEREKEHVEGFAAEVAW 137

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E  M   F   I+S+R+LP    Q     R E         
Sbjct: 138 VTKGGKSDLEKPIAVRPTSETAMYPYFARKIQSHRDLPLKLNQWNNVVRWE--------- 188

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                                                  K       S        H   
Sbjct: 189 --------------------------------------FKHPMPFIRSREFLWQEGHTAH 210

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +  +    +V    D+      +         +     +   A Y  T +          
Sbjct: 211 LTREEASAEVLQILDWYSDVYQNLLAVPVVKGTKTVNEKFPGADYTTTIEGFIPA----- 265

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKG----ADGKDHYVQMGSYGIG-AMRVVA 326
                 + RGI+       G  +S   + T +       GK  +V +     G   R + 
Sbjct: 266 ------TGRGIQAATSHCLGQHFSKMFNITVEDPTAKEAGKSEHVHVWQNSWGLTTRSIG 319

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY-------ARLSKVGCDV 379
            +I +  D +G++ P  VA  ++ +I +    ++  +A E++Y         L++ G  V
Sbjct: 320 VMILTHGDNRGLVIPPRVAEIQVVVIPVGVTAKMSAEAKEELYGKVKKIADDLTEAGVRV 379

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR----EDMSLEEV 434
             D   G   G +F   +L G PL++  G K      V    R    +      ++++ +
Sbjct: 380 ETDYREGYSPGWKFNDWELKGIPLRIEFGPKDAEKGVVTTSRRDIDDKDAARGTINVDNL 439

Query: 435 INYASHRFS 443
            N       
Sbjct: 440 ANEVPKLLE 448


>gi|308190360|ref|YP_003923291.1| proline--tRNA ligase [Mycoplasma fermentans JER]
 gi|319777760|ref|YP_004137411.1| prolyl-tRNA synthetase [Mycoplasma fermentans M64]
 gi|307625102|gb|ADN69407.1| proline--tRNA ligase [Mycoplasma fermentans JER]
 gi|318038835|gb|ADV35034.1| Prolyl-tRNA synthetase [Mycoplasma fermentans M64]
          Length = 478

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 128/413 (30%), Gaps = 70/413 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P      + +   + E     G   + +P L    L+  E      +  E+  +
Sbjct: 35  GTIVFKPNSYGIWEQIQKNLNECFREKGVQNVYLPLLIPEKLFNKEKDHIAGFNPELATI 94

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               DK +                                                    
Sbjct: 95  TKVGDKDLDEK------------------------------------------------- 105

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
               +    +       +     SY  +       +  +R E        S EF+     
Sbjct: 106 ---VFIRPTSEVLFADLFKNSIESYKDLPMIYNQWANVVRWEKTTNPFLRSREFLWQ--- 159

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSL---- 271
                         P+ +       I + +  ++ + A P         EK   +     
Sbjct: 160 ------EGHTCHSNPLEARKFTKGMISTYSKFLKNFLAIPTIIGKKTPKEKFAGACSTYT 213

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E      R ++ G   Y    +S      FK  + +  Y    S+G+ + R++ A+I +
Sbjct: 214 VEAMMKDGRALQAGTSHYLAQNFSKQFEIQFKTENNELDYAYQTSWGV-STRLLGAIIMT 272

Query: 332 SHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             D +GII P  VAP +I ++ +    ++     C+ +Y  LS+    V  D   +  G 
Sbjct: 273 HGDNRGIIIPPRVAPIQIDVLELFANKNKEVHTYCDNLYKDLSRK-FRVRLDSSDKGPGF 331

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + +++ G PL++ VG K + +  V I  R T  + ++   EV +      +
Sbjct: 332 KASNSEIQGVPLRIEVGPKDIENKSVTIVRRDTLEKINIKQSEVKDQVETLLN 384


>gi|83283367|gb|ABC01299.1| prolyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 437

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/407 (13%), Positives = 131/407 (32%), Gaps = 62/407 (15%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADR 99
            + P G +  + +   + EE  +     +  P L    L+  E    D +  E+  +   
Sbjct: 2   IFRPYGYRIWELIQKYLDEEFKKVNVDNVYFPLLIPESLFNKEKDHIDGFSPEIATVT-- 59

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
                                                   + +L     +  + E LM D
Sbjct: 60  -------------------------------------RVGQKQLEENLFIRPTSEVLMMD 82

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +S ++            + + +R               +        H      +  E 
Sbjct: 83  YFSNEINSYRDLPLIYNQWCNVMRWEKTTRPF-----LRTSEFLWQEGHTVHSSYNEAEN 137

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                 +  +     E      I    +  E++     A      E L            
Sbjct: 138 FCLKILNIYE-KFAKEILLLPVICGKKTEKEKFA---GAKDTYTIESL--------MFDG 185

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           + ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I +  D  G++
Sbjct: 186 QALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALIMTHSDDNGLV 244

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            P  ++P ++ +I I  + +      E I  +LS    DV  D+  +  G + + A++ G
Sbjct: 245 LPSKISPIQVQIIQI-KNTEQIDQVVEIIKDKLSDYRIDV--DNSDKSFGFKISEAEIKG 301

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHRFSNN 445
            P+++ +G + + ++++ I  R     +  +  +++ +       + 
Sbjct: 302 IPIRIEIGPRDLENNQITISRRDQQENKIKVDYKDIKSVVDQMIKDY 348


>gi|15669383|ref|NP_248192.1| threonyl-tRNA synthetase [Methanocaldococcus jannaschii DSM 2661]
 gi|1591826|gb|AAB99201.1| threonyl-tRNA synthetase (thrS) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 624

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 140/426 (32%), Gaps = 48/426 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + W P G+   D +   +       GA+ +  P +            D +G+   R 
Sbjct: 220 PGHFRWYPKGKLMRDLLADYVYNLVVNMGAMPVETPIMYDLGNPAIREHADKFGERQYRF 279

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSRE 154
               +K ++           + +      R LP   Y++    FR E R    G+ R R 
Sbjct: 280 RQ-GNKELMLRFAACFGQFMMKKDMYLLPRYLPLKLYELSTYSFRYEQRGELVGLKRLRC 338

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++  L  E +   + K F   L+    L L           I       F    
Sbjct: 339 FTMPDMHTVCLNLEQAMEEFEKQFWECLKTGDDLNLSY-------SVIFRFTKDFFDEHR 391

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D              F I  E  +      +  I+ +    +    D+    + DSL   
Sbjct: 392 D------------WFFKIAKEYKNKYGKDVILEILPKRKHYWVGKVDI---AVIDSLGRP 436

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS-- 332
                  I+V        + +          +G+ + + +     G++  V   +     
Sbjct: 437 IENPTVQIDV--------ESAKRFDIKVHTNEGEIYPIILHCSPTGSIERVLCGLLEKAA 488

Query: 333 ---HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                G   + P  ++P ++ +I +    +   D   K+  +L +      +DD  E + 
Sbjct: 489 IEAEKGNAPMLPVWLSPIQVRVIPVA---ERHYDYALKVAEKLRENNIRADFDDREESVS 545

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGI---REDMSLEEVINYASHRFSN 444
            +   A     P  V++G + +      V I+ + T     +E M+L+E+I       +N
Sbjct: 546 KKIRNAGKEWVPYVVVIGDEEMESDKLTVTIREKSTLKKPYKEKMTLDELIERIKKETAN 605

Query: 445 --NRPV 448
              RP+
Sbjct: 606 YPYRPL 611


>gi|158312212|ref|YP_001504720.1| prolyl-tRNA synthetase [Frankia sp. EAN1pec]
 gi|158107617|gb|ABW09814.1| prolyl-tRNA synthetase [Frankia sp. EAN1pec]
          Length = 471

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 58/408 (14%), Positives = 117/408 (28%), Gaps = 59/408 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + + A +       GA+    P       L  E+   + +  E+  +     K
Sbjct: 41  PYGYALWERMQADVDTRIKAAGAVNAYFPLFIPESYLRREAEHVEGFSPELAVVTHGGGK 100

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 101 ELAEPVVVRP-------------------------------------------------- 110

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +         K   SY  +   L   +  +R E  P     + EF+     G T   
Sbjct: 111 --TSETVIGEYMAKWTQSYRDLPLLLNQWANVVRWELRPRLFLRTSEFL--WQEGHTAHA 166

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            + D   +        + + ++    +  +                 +  E      + +
Sbjct: 167 DAADAAAYARRIALEVYREFMTSVLALPVFVGAKTRKERFAGAINTMTC-EGMMGDGKAL 225

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++      G  ++      F G DG  H     S+G  + R++  +I +  D  G+  P 
Sbjct: 226 QMATSHELGQNFARAFDIDFLGPDGGRHLAWTTSWGS-STRMIGGLIMAHGDDNGLRVPP 284

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFP 401
            +AP ++ ++ ++  D        +I   L+ +G     D   G   G +   A+L G P
Sbjct: 285 VLAPTQVVVLPVRD-DDAVVTKAREITDALTALGVRARLDARPGLSFGRRVTDAELKGIP 343

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++V VG + ++   V +  R T  +  + L E            +  L
Sbjct: 344 VRVEVGPRDLAAGNVTLARRDTAEKFPVPLGEAAGRVPVLLDEVQASL 391


>gi|319440593|ref|ZP_07989749.1| glycyl-tRNA synthetase [Corynebacterium variabile DSM 44702]
          Length = 460

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/437 (13%), Positives = 136/437 (31%), Gaps = 44/437 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           + + PLG +  +N+          +R   + +    +Q   +W  SG    +   ++   
Sbjct: 33  WDYGPLGVELKENIKRQWWRHMVTSRKDVVGVDTSVIQPRQVWEASGHVKVFTDPLVESL 92

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  +A      +EE       + +    +              E +   G+M++   
Sbjct: 93  YTHKRYRADHLLEAYEEKHGHEAPNGLADINDPDTGQPGKWT----EPKAFSGLMKTYLG 148

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESGP 201
            + D          +       F + +                  R  +        +  
Sbjct: 149 PVDDKEGLHYLRPETAQGIFINFKNVMGASRSKPPFGIANTGKSFRNEITPGNFIFRTRE 208

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                   F+   +  E       D  ++ +     D +++       E+ +     T D
Sbjct: 209 FEQMEMEFFVKPGEDEEWHQKWIDDRYNWYVN-LGIDPENLRLFEHPQEKLSHYSKRTVD 267

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGI 319
           V     F      +     GI     +   T   +S    + F  A G+     +     
Sbjct: 268 VEYAFGFTGSKWGELE---GIANRTDYDLKTHMEHSGEDLSFFDQATGERWIPYVIEPAA 324

Query: 320 GAMRVVAAVIESSHDGKGIIWPD-------------SVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++                       ++P K++++ +    +      E
Sbjct: 325 GLGRAMMAFLVDAYSEDEAPNTKGGVDKRVVLRLDRRLSPVKVAVLPLSKK-ETLTPTAE 383

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           KI   L  +  +V +D  G  IG ++   D +G P  V V    + D+ V ++ R T  +
Sbjct: 384 KIADDLRALW-NVDYDTSGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAVTVRERDTMNQ 441

Query: 427 EDMSLEEVINYASHRFS 443
           E +SL+++ +Y +   +
Sbjct: 442 ERVSLDKLQSYLAAELA 458


>gi|238488527|ref|XP_002375501.1| prolyl-tRNA synthetase [Aspergillus flavus NRRL3357]
 gi|220697889|gb|EED54229.1| prolyl-tRNA synthetase [Aspergillus flavus NRRL3357]
          Length = 603

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 70/434 (16%), Positives = 134/434 (30%), Gaps = 84/434 (19%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G +   P      + +         + G    S P   S D L  E    + +  E+  
Sbjct: 119 SGCFILKPASYFIWEEIQEWFNARIKKIGVKNCSFPLFVSEDVLNREKDHIEGFAAEVAW 178

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 179 VTHAGSSPLEKKIAIRPTSETVMYPYYSKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLR 238

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++ ++  LT +G+      +   Y +I+                          
Sbjct: 239 TREFLWQEGHTAHLTKDGAHDEVMHILDLYAQIYE------------------------- 273

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                                  E      +    +  E++    Y  T + +       
Sbjct: 274 -----------------------ELLAVPVVKGQKTEKEKFAGGLYTTTVEGYIPA---- 306

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA-----MRVV 325
                  + RGI+ G     G  +S   + T +    K    +   +          R +
Sbjct: 307 -------TGRGIQGGTSHGLGQNFSKMFNITVEDPSTKPDEKKPPLHVWQNSWGLSTRTL 359

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------LSKVGCD 378
             ++    D +G++ P  VA  +  ++ +    +   +  EK+YA        L+  G  
Sbjct: 360 GVMVMIHSDNRGLVLPPRVADTQTVIVPVGITAKTSDEEREKLYAEIDGLVNILTGAGVR 419

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMSLEEV 434
              D   G   G +F   +L G PL++  G        V    R       +  + + E+
Sbjct: 420 AISDKREGYSPGWKFNDWELRGVPLRIEFGPGESVGQFVTAARRDIPGKDGKSSIQISEL 479

Query: 435 ---INYASHRFSNN 445
              +     +   +
Sbjct: 480 STAVPALLEQIQKD 493


>gi|296284112|ref|ZP_06862110.1| prolyl-tRNA synthetase [Citromicrobium bathyomarinum JL354]
          Length = 533

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 68/412 (16%), Positives = 135/412 (32%), Gaps = 87/412 (21%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    + +  ++ +    TG      P       +  E+   + + KEM  +
Sbjct: 56  GCMVIKPWGYGIWERIQRLLDDRIKATGHDNAYFPLFIPLSNFEREADHVEGFAKEMAVV 115

Query: 97  ADRN-----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                                ++ ++  PT E ++ D     ++S+R+LP    Q     
Sbjct: 116 THHRLIADGKGGLIPDPEAKLEEPLVVRPTSETIIGDAMARWVQSWRDLPLKLNQWANVV 175

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E+R R   +R+ EFL ++ ++   TPE +K     M   Y  +               
Sbjct: 176 RWEMRTRM-FLRTSEFLWQEGHTAHATPEEAKDHTLTMLEVYRAMAED------------ 222

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                        D  +P    +  +       VE W       
Sbjct: 223 -----------------------------DLALPVIAGEKPEHERFPGAVETW------- 246

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                        E      + ++ G   Y GT ++      ++  +G + +    S+G+
Sbjct: 247 -----------SIEAMMQDGKALQAGTSHYLGTNFAKASGIKYQAQEGGEQFAHTTSWGV 295

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARL---S 373
            + R++  +I +  D  G+  P  +AP+++ ++ +      D    + CE + A L    
Sbjct: 296 -STRLIGGIIMTHGDDDGLRVPPKLAPWQVVILPMLRGNDDDAALIEYCEGLRATLAGQQ 354

Query: 374 KVG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            +G    V  D    +   +       G P+ V VG + + +  V +  R  
Sbjct: 355 ALGEPVRVLLDTKPGKPAQKRWDWVRKGAPVIVEVGGRDMENGVVTLIRRDN 406


>gi|54020489|ref|YP_115908.1| prolyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
 gi|81823524|sp|Q600Q7|SYP_MYCH2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|53987662|gb|AAV27863.1| prolyl aminoacyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
          Length = 479

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 139/412 (33%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G   + PLG K  +N+  I+     +     +  P L   D +  E    + +  E+L +
Sbjct: 35  GTIYFKPLGYKIWENIVKIVNAYFVKQKIENVYFPLLIPQDFIEKEKKHIEGFAPELLTI 94

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               DK +       PT E +  D F++ I     LP    Q     R E +     +R+
Sbjct: 95  TKVGDKNLVENIYIRPTSELLFADYFKAEIAKNNILPIKLNQWSQVLRWE-KTTNPFLRN 153

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++                                       I          
Sbjct: 154 TEFLWQEGHT---------------------------------------IHASKVEADQF 174

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    +  ++++  P+         I    +  E++              +     
Sbjct: 175 AKKIARFYKYFLENYLAIPV---------ISGQKTEREKFAG-----------AVNTYTV 214

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E    + R ++     + G  ++      +K  + K       S+G+ + R++ A++   
Sbjct: 215 EAMMQNFRALQSATAHFLGQNFAKNFEIFYKNKENKSQIPFQTSWGL-STRLIGAIVMVH 273

Query: 333 HDGKGIIWPDSVAPFKISLI-NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            D  G+I+P  +AP ++ ++      +Q  +   +KI   L         DD  +QIG +
Sbjct: 274 SDDNGLIFPPKIAPIQVDILEFFSKKNQEVKIFAKKIAKILKNAKISYKIDDTDQQIGYK 333

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              +++ G P+++ +G   V ++++ +  R    +   +++ +         
Sbjct: 334 INNSEVHGAPIRIEIGPNEVKNNQICLVRRDNHQKFFFNIDLLKEKCRKILE 385


>gi|197294659|ref|YP_001799200.1| glycyl-tRNA synthetase [Candidatus Phytoplasma australiense]
 gi|171853986|emb|CAM11949.1| Glycyl-tRNA synthetase, class II [Candidatus Phytoplasma
           australiense]
          Length = 452

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/427 (14%), Positives = 132/427 (30%), Gaps = 32/427 (7%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG    +N+     ++  +  +  + +    L ++ +W  SG  DS+   +    
Sbjct: 31  WDYGPLGSLLKNNLKKAWLQKFFQEQSQNILLDGSILLNSSVWRSSGHLDSFSDPLTENK 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D N +        E             Y  +     + ++       P        +   
Sbjct: 91  DNNKRFRADKLIEEHQPGLDISCWT--YEQMHQYLVENKVLGTSNWTPIQPFNMLFQTHQ 148

Query: 158 -----------KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
                          +        K+              ++G            I    
Sbjct: 149 GVVLEKSKPLYLRPETAQGIFIQFKNILKTTRKKIPFGVCQVGKVFRNEITPGNFIFRSC 208

Query: 207 SHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             E     F    +T        K+FM   + +     +++   N   E+ +  Y+  + 
Sbjct: 209 EFEQMELEFFCEPNTQNEWFEYWKNFMYQFLITLGMKKENLSFKNHQKEELS-HYSEKTT 267

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               K    + E   +++R             +S      F     K ++  +    +G 
Sbjct: 268 DILFKFPWGMDELWGIASRTDFDLKNHQ---NHSKKDLTYFDPNTQKRYFPYVIEPSLGV 324

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH------DQVCRDACEKIYARLSKV 375
            R+  A++ +++    +             +            +      ++I   L K 
Sbjct: 325 ERLFLALLINNYHEDSVNQTPRQVLTFHPFLAPYKVAVLPLIKKEHASKAKEIENYLMKY 384

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             DV +DD  + IG ++   D++G P  + V  + +  + V +++R T  +E M+LEEV 
Sbjct: 385 -LDVCYDDT-QSIGKRYRRQDMIGTPFCLTVDHETLEKNTVTLRNRDTLKQETMTLEEVK 442

Query: 436 NYASHRF 442
           NY   + 
Sbjct: 443 NYVLSQV 449


>gi|171910276|ref|ZP_02925746.1| prolyl-tRNA synthetase [Verrucomicrobium spinosum DSM 4136]
          Length = 510

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 138/443 (31%), Gaps = 92/443 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +  +   TG      P L     L  E+   + +  E   +
Sbjct: 36  GCMVIKPWGYGIWELIQKHLDAKFKETGHQNAYFPLLIPLSYLEKEAQHAEGFATECAVV 95

Query: 97  ADRN-------------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                                  ++  +  PT E ++   F   ++SYR+LP    Q   
Sbjct: 96  THHRLEAVKQPDGTVKMEPTGKLEEPFVIRPTSETIIGAAFARWVESYRDLPLLINQWAN 155

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R E+RPR  + R+ EFL ++ ++   T E +      M   Y                
Sbjct: 156 VMRWEMRPRLFL-RTAEFLWQEGHTAHETSEEAMKEAKLMHGVYEDFLRNYLAIP----- 209

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                                             IP E T+ +                 
Sbjct: 210 ---------------------------------AIPGEKTERERFPG------------- 223

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                    L     E      + I+ G   + G  ++   +  F G D   H+    S+
Sbjct: 224 --------ALNTFTVEAMVQDRKAIQAGTSHFLGQNFAKAANIEFLGRDNLRHHAWTTSW 275

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSK 374
           G+ + R++  ++ +  D  G + P  +AP +I ++ +           DACE +   L  
Sbjct: 276 GV-STRLIGTLLMAHADDDGAVLPPRIAPTQIVILPVTPKPDTKDAVIDACEALATTLRA 334

Query: 375 V-----GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI--KHRLTGIRE 427
                    V  D      G++       G PL+V +G + ++   V +  + R    +E
Sbjct: 335 HAFHGEPLRVHVDKRDIAGGARNWEWIKKGVPLRVEIGPRDITSRSVAVARRDRGPKEKE 394

Query: 428 DMSLEEVINYASHRFSN-NRPVL 449
            +  E+ I       ++  + +L
Sbjct: 395 FIPKEQFIQDVGDILADIQKQLL 417


>gi|167957340|ref|ZP_02544414.1| glycyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7c]
          Length = 473

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 69/457 (15%), Positives = 138/457 (30%), Gaps = 53/457 (11%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G I+Q S       G + + PLG +   N+  +        R     +    L +  +
Sbjct: 21  RRGFIYQGSDVYGGLSGTWDYGPLGVQLKRNIMNLWWRRFVDERDDMYGVDAAILMNQKV 80

Query: 80  WVESGRYDSYGK----EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL------- 128
           W  SG  D++      ++          +I     E        +  K+  +L       
Sbjct: 81  WKASGHVDTFSDPLVEDLKTGERFRADHLIRDELAEMYRATNVPNPEKTAEDLIAKSGST 140

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMK----------DAYSFDLTPEGSKHSYNKMF 178
               Y+       +      +   + F M           DA    L PE ++  +    
Sbjct: 141 DKELYEFIKVNNIKSPAGNELSEVKRFNMMFKTYVGAVTNDASISYLRPETAQGIFTNFK 200

Query: 179 VSYLRIFH-------RLGLKSIPMRAESGPIGGDLSHEFI---VLADTGETQVFCSKDFM 228
                 +        + G       A    +      E +      D    Q    +   
Sbjct: 201 NVVDSFYPNLPFGIAQQGKAFRNEIAPRDFVFRSREFEQMEIEYFVDPEHWQEAFDELLA 260

Query: 229 D-FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                 +E     + I    +  +  A Y+  +            E   ++ R       
Sbjct: 261 STHAFLAELGLKPEHIHELDVPAEDRAHYSKKTIDIEYDYPIGCEELMGIAYRTDFDLMN 320

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------- 339
               +  S+  +              +     G  R + AV+  ++              
Sbjct: 321 IQRASGKSMEYTVK---GTNTKFVPHVIEPSFGVERALMAVLSGAYREDEQNGEKRVYLA 377

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADLL 398
            P+ +AP K ++  +  +     +   ++YA+L+K     V WDD    IG ++   D +
Sbjct: 378 LPEHLAPVKFAVSPLLKNKPELVEKAREVYAQLAKANPGRVMWDD-NGNIGKRYRRQDEI 436

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G P  V+V  + + D  V ++ R T  +  + +EE++
Sbjct: 437 GTPHCVVVDFQTLEDGTVTVRERDTTEQRRVKVEELL 473


>gi|289616456|emb|CBI56771.1| unnamed protein product [Sordaria macrospora]
          Length = 542

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 84/240 (35%), Positives = 126/240 (52%), Gaps = 3/240 (1%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWV 81
           H  ++R G + Q   GI+  LPLG++  D V  ++ +    +  A  +S+ ++ S  LW 
Sbjct: 28  HSKLIRAGFLRQSHAGIFHMLPLGKRVQDKVERLVAKHMEESLAASRVSLSSISSEALWE 87

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            SGR  +   E+ R  DR   A +  PTHEE +T++    ++SY++LP   YQI  KFRD
Sbjct: 88  RSGRLQNIAPELFRFLDRKGGAYLLSPTHEEEITNLVAQTVRSYKDLPLRLYQITRKFRD 147

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           ELRPR G++R REF MKD Y+FD     +  +Y K+  +Y RIF+ + L  +  +A SG 
Sbjct: 148 ELRPRHGLLRGREFTMKDLYTFDTDLRSALDTYEKVRGAYSRIFNDMKLPVLAAKASSGD 207

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           +GGDLSHE+ + +  GE  V       D+ I  E      +       +      A T D
Sbjct: 208 MGGDLSHEYHLPSPFGEDSVITCGSC-DYTIN-EEIATTRVAHETCQADHVGVWRAITKD 265



 Score = 56.3 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 17/148 (11%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY---------------V 312
                       + +E+GH F+ GT+YS P++A         +                +
Sbjct: 392 CPQCSSGTLNVQKAMELGHTFHLGTRYSEPLNAKISLPPPSPNEAKTSPGGSGTSKTVSM 451

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           QMG +GIG  RV+ AV E   D KG+ WP ++AP+   ++  + H     +  ++I    
Sbjct: 452 QMGCHGIGISRVMGAVAEHLADDKGLNWPVAIAPYTCVVVFAEDHYNDAVEVYKRILDGS 511

Query: 373 --SKVGCDVFWDDMGEQIGSQFAVADLL 398
                  D+  DD  + +  +   A LL
Sbjct: 512 GDQDERLDIILDDRQKSLPWKLKDATLL 539


>gi|71893734|ref|YP_279180.1| prolyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
 gi|114152216|sp|Q4A9V2|SYP_MYCHJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71851861|gb|AAZ44469.1| prolyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
          Length = 479

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 62/412 (15%), Positives = 138/412 (33%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G   + PLG K  +N+  I+     +     +  P L   D +  E    + +  E+L +
Sbjct: 35  GTIYFKPLGYKIWENIVKIVNAYFVKQKIENVYFPLLIPQDFIEKEKKHIEGFAPELLTI 94

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                K +       PT E +  D F++ I     LP    Q     R E +     +R+
Sbjct: 95  TKVGGKNLVENIYIRPTSELLFADYFKAEIAKNNILPIKLNQWSQVLRWE-KTTNPFLRN 153

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++                                       I          
Sbjct: 154 TEFLWQEGHT---------------------------------------IHASKVEADQF 174

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    +  ++++  P+         I    +  E++              +     
Sbjct: 175 AKKIARFYKYFLENYLAIPV---------ISGQKTEREKFAG-----------AVNTYTV 214

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E    + R ++     + G  ++      +K  + K       S+G+ + R++ A++   
Sbjct: 215 EAMMQNFRALQSATAHFLGQNFAKNFEIFYKNKENKSQIPFQTSWGL-STRLIGAIVMVH 273

Query: 333 HDGKGIIWPDSVAPFKISLI-NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            D  G+I+P  +AP ++ ++      +Q  +   +KI   L         DD  +QIG +
Sbjct: 274 SDDNGLIFPPKIAPIQVDILEFFSKKNQEVKIFAKKIAKILKNAKISYKIDDTDQQIGYK 333

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              +++ G P+++ +G   V ++++ +  R    +   +++ +         
Sbjct: 334 INNSEVHGAPIRIEIGPNEVKNNQICLVRRDNHQKFFFNIDLLKEKCRKILE 385


>gi|261403652|ref|YP_003247876.1| threonyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
 gi|261370645|gb|ACX73394.1| threonyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
          Length = 620

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 137/426 (32%), Gaps = 48/426 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + W P G+   D +   +       GA+ +  P +            D +G+   R 
Sbjct: 216 PGHFRWYPKGKLIRDLLADYVYNLVVDMGAMPVETPIMYDLGNPAIREHADKFGERQYRF 275

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSRE 154
               +K ++           + +      R LP   Y++    FR E R    G+ R R 
Sbjct: 276 RQ-GNKELMLRFAACFGQFMMKKDMYLLPRYLPLKLYELSTYSFRYEQRGELVGLKRLRC 334

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++  L  + +   + K F   LR    L L           I       F    
Sbjct: 335 FTMPDMHTVCLDLKQAMEEFEKQFWECLRTGDDLNLSY-------SVIFRFTKDFFDEHR 387

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D              F I  E         +  I+ +    +    D+    + DSL   
Sbjct: 388 D------------WFFKIAKEYKSKTGKDIILEILPKRKHYWVGKVDI---AVIDSLGRP 432

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS-- 332
                  I+V        + +   +      +G+ + + +     G++  V   +     
Sbjct: 433 IENPTVQIDV--------ESAKRFNIKVHTNEGEIYPIILHCSPTGSIERVLCGLLEKAA 484

Query: 333 ---HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                G   + P  ++P ++ +I I    +   D   K+  +L      V  DD  + + 
Sbjct: 485 IEAERGNAPMLPVWLSPIQVRVIPIA---ERHYDYALKVAEKLKDNKIRVDVDDREDSVS 541

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGI---REDMSLEEVINYASHRFSN 444
            +   A     P  V++G + +      V ++ + T     +E MSLEE+I         
Sbjct: 542 KKIRNAGRDWIPYVVVIGDEEMESDKLTVTVRKKSTLKKPHKEKMSLEELIELIQKEIEG 601

Query: 445 N--RPV 448
              +P+
Sbjct: 602 YPIKPL 607


>gi|315049859|ref|XP_003174304.1| prolyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
 gi|311342271|gb|EFR01474.1| prolyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
          Length = 631

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 84/255 (32%), Positives = 132/255 (51%), Gaps = 5/255 (1%)

Query: 2   RRSKYFLPI--LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R S +++P   + E+     + S+ L++R G + Q   G++  LPLG +  + +  +I +
Sbjct: 41  RASSFWVPSGGIAESKNG--VDSNDLLIRAGFLRQPYSGVFHLLPLGLRVQEKLERLIDK 98

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
              +  A ++S+ +L S  LW +SGR  +   E+ R  DR     +  PTHEE +T +  
Sbjct: 99  HMRKLSASKLSLSSLSSQALWKKSGRLHNDDSEVFRFVDRKKTPFLLAPTHEEEITTLVS 158

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             IKSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+FD T   +  +YN +  
Sbjct: 159 GLIKSYRDLPLRVYQISRKYRDEPRPRHGLLRGREFVMKDLYTFDSTEGEAIKTYNTVKD 218

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +Y+ +F  L +  +   A SG +GG+LSHEF   +  GE  V       ++    E    
Sbjct: 219 AYISLFKELKIPYVVASASSGNMGGNLSHEFHFPSPKGEDTVVSCSKC-EYVFNEELASG 277

Query: 240 DDIISLNSIVEQWTA 254
                L     +  A
Sbjct: 278 KSSNKLTENKPEIDA 292



 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 14/192 (7%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-----------KGADGKDHYVQM 314
               S         + IE+ H F+ GT+YS  + A             +    +   +QM
Sbjct: 440 DECPSCGSPSLKIDQSIELAHTFHLGTRYSDVLQANVSINPAILANAGQKGKQEPVPIQM 499

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G +GIG  R+++AV +   D KG+ WP ++APF+++++      +   +    +  R ++
Sbjct: 500 GCHGIGVSRMISAVSDILADEKGLNWPQAIAPFQVAVVP-GKGLEKEAELVYDVVTRNTQ 558

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGI-REDMSLE 432
              D   DD  +    +   ADL+G+P+ + VG    S   KVE++ R  G  R  +SLE
Sbjct: 559 QPIDTILDDRKKDFAWKLRDADLIGYPVILAVGKNSWSAGNKVEVQCRRLGNLRTKISLE 618

Query: 433 EVINYASHRFSN 444
           EV    S   S 
Sbjct: 619 EVPELVSSLLSK 630


>gi|291299687|ref|YP_003510965.1| prolyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
 gi|290568907|gb|ADD41872.1| prolyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
          Length = 468

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 136/399 (34%), Gaps = 67/399 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + + A + +    TGA   S P L     L  E+   + +  E   +     K
Sbjct: 39  PTGFALWERMVAEMDDRIKETGAENASFPLLIPQSYLSKEAQHVEGFAPECWTVTHAGGK 98

Query: 103 AMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E V+ +     +KSYR+LP    Q                    + M+
Sbjct: 99  ELEEPVVVRPTSETVIGESMSRWVKSYRDLPLLLNQWCNV--------------MRYEMR 144

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                  +    +                 G  +     ++      + HE  V  D  E
Sbjct: 145 TRLFLRSSEFLWQE----------------GHTAHATFEDAAAYNRRILHE--VYQDFME 186

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
             V                       L +  E++       +            E     
Sbjct: 187 NVVA----------------LPVFTGLKTAAERFAGAINTFT-----------CEAMMRD 219

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            + ++ G     G  ++      + G+DGK H+    S+G+ + R+V A+I    D  G+
Sbjct: 220 GKALQAGTAHELGQNFAKAFDIQYLGSDGKQHHAWTTSWGV-STRMVGALIMGHGDDSGL 278

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADL 397
             P  +AP +  ++ +K   +   +A  K +A L   G     +D      G +   A+L
Sbjct: 279 RVPPRLAPVQAYVMTVKDG-EGVSEAAAKTHAALRAAGVRSKLNDRSDVAFGRRAVDAEL 337

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            G+P+++ +G + V++ K  +  R+ G +  +SL+ V  
Sbjct: 338 KGYPVRLEIGPRDVAEGKAMLVRRIAGTKTQVSLDGVTE 376


>gi|313678253|ref|YP_004055993.1| proline--tRNA ligase [Mycoplasma bovis PG45]
 gi|312950316|gb|ADR24911.1| proline--tRNA ligase [Mycoplasma bovis PG45]
          Length = 478

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 71/412 (17%), Positives = 142/412 (34%), Gaps = 68/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P      + +   +    N      + +P      L   E      +  E+  +
Sbjct: 35  GTMIFKPNSFGIWEQIQKALNGIFNSLKIQNVYLPLFIPDRLLAKEKEHIAGFNPELATI 94

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               DK +       PT E +  D+F+  I S+++LP  + Q     R E          
Sbjct: 95  TKVGDKDLEQKIYVRPTSEVLFADLFKKMIVSHKDLPILYNQWANVVRWEKTTNP----- 149

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
                                + +      +  H     +I  R  +  +          
Sbjct: 150 ---------------------FLRNREFLWQEGHTCHKSAIEARKLTRDMIN-------- 180

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                   V+         IP+       II   +  E++    +  +            
Sbjct: 181 --------VYAKFLKNYLAIPT-------IIGKKTPYEKFAGACSTYT-----------V 214

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   Y    +S     +FK    +D +V   S+G+ + R++ A+I + 
Sbjct: 215 EAMMKDGKALQAGTSHYLAQNFSKKFEISFKNDKNEDEFVYQTSWGV-STRLLGAIIMTH 273

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            D +GII P  VAP ++ ++ + A+ Q    D C+++  +L +    V  D   +  G +
Sbjct: 274 GDNRGIIIPPKVAPVQVDILELFANKQPRVHDFCQELVKQLERK-FRVRLDSTDKSPGYK 332

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + +++ G PL++ VG K + +  V I  R T  +  + + EV +      +
Sbjct: 333 ASNSEIQGVPLRIEVGPKDLENKTVTIVRRDTLEKTIVDISEVKSKVRELLA 384


>gi|328773429|gb|EGF83466.1| hypothetical protein BATDEDRAFT_15636 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 504

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 69/435 (15%), Positives = 130/435 (29%), Gaps = 73/435 (16%)

Query: 24  KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWV 81
           +++LR  M+  +   G Y   P       ++           G  +   P      +L  
Sbjct: 18  QVLLRAEMMDYYDISGCYIIRPWAYTIWKHIQKFFGSHIEELGVEDCYFPMFVPEKNLNK 77

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           E    + +  E+  +       +       PT E VM   + + I+S+R+LP    Q   
Sbjct: 78  EKDHIEGFSPEVAWVTRAGQSDLAEPIAIRPTSETVMYPYYSTWIRSHRDLPLRLNQWCN 137

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             R             EF                                   K      
Sbjct: 138 VVR------------WEF-----------------------------------KHPQPFL 150

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            +        H      +  +T+V      +   +  E      +    S  E++     
Sbjct: 151 RTREFLWQEGHTAFATKEEADTEVL-QILDLYRRVYEEILAVPVVPGRKSEKEKFAGGLY 209

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            T       +   +P     + R I+       G  +S       +    +   V   S+
Sbjct: 210 TT------TVEGFVP----TTGRAIQCATSHCLGQNFSKMFKILMENDARERVNVWQNSW 259

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYA 370
           G+   R +  ++    D KG+I P  VA  ++ ++ +               D  E++ A
Sbjct: 260 GL-TTRTIGVMVMVHGDDKGLILPPRVASIQVVVVPVGITAKTSLEDRAAINDKAEELTA 318

Query: 371 RLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            L K G     D       G ++   +L G PL++ VG K ++ ++     R  G  + +
Sbjct: 319 VLKKAGIRSKSDCRDNYSPGYKYNHWELKGVPLRLEVGPKDIAKNETRCVRRDNGAAQQL 378

Query: 430 SLEEVINYASHRFSN 444
           SL ++    S     
Sbjct: 379 SLVDISTTVSTMLET 393


>gi|238810182|dbj|BAH69972.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 482

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 128/413 (30%), Gaps = 70/413 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P      + +   + E     G   + +P L    L+  E      +  E+  +
Sbjct: 39  GTIVFKPNSYGIWEQIQKNLNECFREKGVQNVYLPLLIPEKLFNKEKDHIAGFNPELATI 98

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               DK +                                                    
Sbjct: 99  TKVGDKDLDEK------------------------------------------------- 109

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
               +    +       +     SY  +       +  +R E        S EF+     
Sbjct: 110 ---VFIRPTSEVLFADLFKNSIESYKDLPMIYNQWANVVRWEKTTNPFLRSREFLWQ--- 163

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSL---- 271
                         P+ +       I + +  ++ + A P         EK   +     
Sbjct: 164 ------EGHTCHSNPLEARKFTKGMISTYSKFLKNFLAIPTIIGKKTPKEKFAGACSTYT 217

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E      R ++ G   Y    +S      FK  + +  Y    S+G+ + R++ A+I +
Sbjct: 218 VEAMMKDGRALQAGTSHYLAQNFSKQFEIQFKTENNELDYAYQTSWGV-STRLLGAIIMT 276

Query: 332 SHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             D +GII P  VAP +I ++ +    ++     C+ +Y  LS+    V  D   +  G 
Sbjct: 277 HGDNRGIIIPPRVAPIQIDVLELFANKNKEVHTYCDNLYKDLSRK-FRVRLDSSDKGPGF 335

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + +++ G PL++ VG K + +  V I  R T  + ++   EV +      +
Sbjct: 336 KASNSEIQGVPLRIEVGPKDIENKSVTIVRRDTLEKINIKQSEVKDQVETLLN 388


>gi|188590702|ref|YP_001920953.1| threonyl-tRNA synthetase 1 [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500983|gb|ACD54119.1| threonyl-tRNA synthetase 1 [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 344

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 53/367 (14%), Positives = 113/367 (30%), Gaps = 32/367 (8%)

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           ++  +G Y+ Y K+M       D+  +           IF    +SY+ LP    ++   
Sbjct: 1   MYETTGHYNKYSKDMYPSFYAYDEDYVMRSVTCPNHYAIFLQQERSYKELPLRITEMSTL 60

Query: 139 FRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            R +      G+ R+  F + DA+ F          + K+      +  + G+       
Sbjct: 61  IRKDRSSELSGLYRTNTFTLNDAHIFCSQDNIELE-FLKIIDFIKCVNDKFGI------- 112

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                        +  +D    +   ++           +  +       I +     Y 
Sbjct: 113 ------SSHVRYRLSFSDFSNDKYIKNESLWKKSENILESILNKSDLDFFISKDKACFYG 166

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
              DV  E       +   ++   ++    F    K+++           K+  V +   
Sbjct: 167 PKLDVLIENYN---GKEYILTTVQLD----FILPGKFNVYF---INNNFEKEQPVVIHRA 216

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
              ++    A +   + G    W        I                ++I   L ++  
Sbjct: 217 LPFSIERTIAFLTEYYQGIFPFWLAPEQVVIIPTTLDNIK------YSQQIEYHLKEIDI 270

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +  D    +   +   A L   P  VIVG K   ++ V I++R    ++ ++LE+ I  
Sbjct: 271 RIECDLRDTRFNKKIKQATLNRTPYIVIVGDKESKNNMVTIRNR-NNEQQFLTLEDFIQK 329

Query: 438 ASHRFSN 444
              +  N
Sbjct: 330 LDTKNRN 336


>gi|281355646|ref|ZP_06242140.1| glycyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
 gi|281318526|gb|EFB02546.1| glycyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
          Length = 445

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 60/457 (13%), Positives = 129/457 (28%), Gaps = 40/457 (8%)

Query: 12  QENPRDAEIASHK--LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ-- 61
           +E  +D E+      L  R G I   S       G + + P G +    +  +   E   
Sbjct: 3   EEEVKDLELMDKIVSLCKRRGFIFPSSEIYGGINGFWDYGPYGARMKRAIENLWWHEMVE 62

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            R     +    +    +W  SG  D +   M        +  +          +     
Sbjct: 63  TRDNVEGLDSTIICHPRVWKASGHLDQFSDLMTDCKKCKSRYRVDQMADPTTCPNCGSKD 122

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +   R              DE    +    + + +  D +S  +                
Sbjct: 123 LTEPREFNLMMKTFVGPVFDEEHTAWLRAETCQPIFVDFHSVRVATRQKLPFGIAQIGKA 182

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            R        +   R  +         EF    + G       K        ++    DD
Sbjct: 183 FRNEINPRNFTFRSREFTQMEM-----EFFCDGEEGMEWFEYWKQQRINYYKNKLKFSDD 237

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MS 299
              +    +   A YA  +     K      E + V  RG      +   T++S      
Sbjct: 238 FFRIYVHEK--LAHYAKAAIDIEVKFPFGWGELEGVHHRG-----TWDL-TRHSEFSGED 289

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP------------ 346
             +   D        +    +G  R + A++  ++D +                      
Sbjct: 290 LQYMDHDNSRKLMPTVIETSVGLDRTMLALLCRAYDEEKAATAKEGMDEDTRVVLHLPPL 349

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
                + +    +  ++    +Y  +        +D+ G  +G ++   D +G P  V  
Sbjct: 350 VAPIQVAVLPLSKKLKEPAYALYKEI-DRHFRCEYDETG-SVGKRYRRQDEIGTPFSVTF 407

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                +D+ V +++R T  +E +++ ++ +Y   +  
Sbjct: 408 DFDSANDNAVTVRNRDTMEQERVNVTQLRDYLEKQIE 444


>gi|238063301|ref|ZP_04608010.1| prolyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
 gi|237885112|gb|EEP73940.1| prolyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
          Length = 468

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 59/408 (14%), Positives = 122/408 (29%), Gaps = 59/408 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDK 102
           P G    + + A +       GA     P          E+   + +  E+  +     K
Sbjct: 39  PAGYAIWERMQAEMDARIKAAGAENAYFPLFIPESYLKREAEHVEGFSPELAVVTHGGGK 98

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 99  QLAEPVVVRP-------------------------------------------------- 108

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +         K   SY  +   L   +  +R E  P     + EF+     G T   
Sbjct: 109 --TSETVIGEFMAKWIDSYRDLPLLLNQWANVVRWELRPRIFLRTSEFL--WQEGHTAHA 164

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
            S D   +     +  ++D++     +                    +  E      + +
Sbjct: 165 TSSDARAYARRILHEAYEDLMVNVLGIPVVVGLKTVRERFAGATATYTC-EGMMGDGKAL 223

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++G     G  ++     ++  A+G   +    S+G  + R++  +I +  D  G+  P 
Sbjct: 224 QLGTSHELGQNFAKAFDISYSSAEGGREHAWTTSWGT-STRMLGGLIMAHGDDNGLRVPP 282

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFP 401
            +AP +  ++ +KA D    +A  K+   L   G  V  DD  +   G +   A+L G+P
Sbjct: 283 RLAPVQAYVMVVKAGD-GVGEAAAKLCDALRDAGVRVALDDRTDTPFGRRAVDAELRGYP 341

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++V VG + ++     +  R  G +    + +V+         ++  L
Sbjct: 342 VRVEVGPRDLAAGNAVVVRRTDGSKSPTPVADVVGAVLAALETDQRAL 389


>gi|218662034|ref|ZP_03517964.1| threonyl-tRNA synthetase [Rhizobium etli IE4771]
          Length = 305

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 99/314 (31%), Gaps = 31/314 (9%)

Query: 128 LPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           +P    +  L  R E      G+MR R F   DA+ F    + +           L ++ 
Sbjct: 1   MPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKIN-DLILSVYE 59

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             G K I ++  + P     S      A+   T V          I +++        L 
Sbjct: 60  DFGFKEIVVKLSTRPEKRVGSDALWDRAEAVMTDVL-------KTIEAQSEGRIKTGIL- 111

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
                  A Y    +     L D++    +     ++      FG        A +  ++
Sbjct: 112 ---PGEGAFYGPKFEY---TLKDAIGREWQCGTTQVDFNLPERFG--------AFYIDSN 157

Query: 307 GKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
            +      +     G+M     ++  +  G   +W   +     ++              
Sbjct: 158 SEKTQPVMIHRAICGSMERFLGILIENFAGHMPLWVSPLQVVVATIT------SEADAYG 211

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++   L + G +V  D   E+I  +     +   P+ ++ G K   +  V I+   +  
Sbjct: 212 LEVAEALREAGLNVETDFRNEKINYKIREHSVTKVPVIIVCGRKEAEERTVNIRRLGSQD 271

Query: 426 REDMSLEEVINYAS 439
           +  M L+  ++  +
Sbjct: 272 QVSMGLDAAVDSLT 285


>gi|331703337|ref|YP_004400024.1| Proline tRNA ligase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801892|emb|CBW54045.1| Proline tRNA ligase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 474

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 56/411 (13%), Positives = 126/411 (30%), Gaps = 64/411 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  + +   + EE  +     +  P L    L+  E    + +  E+  +
Sbjct: 36  GTMIFRPYGYRIWELIQKYLDEEFKKINVDNVYFPLLIPESLFNKEKDHIEGFSPEIATV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               +K +                                               + E +
Sbjct: 96  TKVGEKQLEENLFIRP---------------------------------------TSEVV 116

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           M D +S ++            + + +R               +        H   V +  
Sbjct: 117 MMDYFSNEINSYRDLPLIYNQWCNVMRWEKTTRPF-----LRTSEFLWQEGHT--VHSSY 169

Query: 217 GETQVFCSKDF-MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            E + FC K   +      E      I    +  E++     A      E L        
Sbjct: 170 NEAEDFCLKILNIYEKFAKEILLLPVICGKKTEKEKFA---GAKDTYTIESL-------- 218

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I +  D 
Sbjct: 219 MFDGQALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALIMTHSDD 277

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G+    S        I    + +      E I  +LS    DV  D+  +  G + + A
Sbjct: 278 NGL-VLPSKISPIQIQIIQIKNTEQIDQVVEIIKDKLSDYRIDV--DNSDKSFGFKISEA 334

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHRFSNN 445
           ++ G P+++ +G + + ++++ I  R     +  +  ++V         + 
Sbjct: 335 EIKGIPIRIEIGPRDLENNQITISRRDQQENKIKIDYKDVKKVVDQMIKDY 385


>gi|302871793|ref|YP_003840429.1| glycyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574652|gb|ADL42443.1| glycyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
          Length = 434

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 61/435 (14%), Positives = 137/435 (31%), Gaps = 35/435 (8%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G I Q S    G+   + + PLG +  +N+  +  +   Q R   + +    L +  +
Sbjct: 13  RRGFIFQSSEIYGGLNSCWDYGPLGVEMKNNIKRLWWKANVQLRDDVVGLDSSILMNPKV 72

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG   ++   M        +         + + +               F  +   F
Sbjct: 73  WEASGHLSNFADPMADCKVCKKRW------RTDQLQEYKCPECGGELTEARMFNLMFKTF 126

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
              +     V+  R    +  +   +  + +        ++ +    R  +        +
Sbjct: 127 MGPVEDESAVVYLRPETAQGIFVNFVNVQQTMRKKLPFGIAQIGKSFRNEITPGNFIFRT 186

Query: 200 GPIGGDLSHEFIVL--ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                     F+     D         +    + +        + + +    +   A YA
Sbjct: 187 REFEQMEIEYFVKPGTDDYWHRHWIDQRINWYYKLGIRK----ENLRIREHGKNELAHYA 242

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E + ++ R            KYS    + F     + +   +   
Sbjct: 243 KACVDIEYLFPMGWSELEGIANRTDFDLTQHQ---KYSGENLSYFDDETKQRYIPYVIEP 299

Query: 318 GIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKI 368
             G  R + A +  +++ + I             ++AP K ++  +   +++ +    +I
Sbjct: 300 SAGVDRSLLAFLIDAYEYQQIDKDDFRVVLHLHPAIAPVKAAVFPLLKKEELVK-KAREI 358

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L      V +D+ G  IG ++   D +G P  + V  + + D  V I+ R T  +  
Sbjct: 359 YNELKYKWI-VQYDESG-SIGKRYRRQDEIGTPFGITVDYQTLEDETVTIRDRDTMEQVR 416

Query: 429 MSLEEVINYASHRFS 443
           + ++E+I Y   R  
Sbjct: 417 VHIKEIIPYLEERIE 431


>gi|297620157|ref|YP_003708262.1| threonyl-tRNA synthetase [Methanococcus voltae A3]
 gi|297379134|gb|ADI37289.1| threonyl-tRNA synthetase [Methanococcus voltae A3]
          Length = 629

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 141/417 (33%), Gaps = 46/417 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + W P G+   D ++  + +   + GA+ +  P +            D +G+   R 
Sbjct: 225 AGHFRWYPKGKLIRDLLSDYVYDLVVKYGAMPVETPVMYDLGNKAIKEHADKFGERQYRF 284

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSRE 154
              ++K ++           + +      ++LP   Y++    FR E R    G+ R R 
Sbjct: 285 RQ-SNKDLMLRFAACFGQFMMKKDMYLLPKHLPLKLYELSTYSFRYEQRGELVGLKRLRA 343

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++  +  E +K ++ + F   L+    L      +   +               
Sbjct: 344 FTMPDMHTVCMDMEQAKQAFEEQFWMGLQTGDDLKTPYSIIFRFTQDFYD---------- 393

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              E + +      ++    E          + ++E   A         +  + DS    
Sbjct: 394 ---EHKDWLYNIITEYRAKYEK---------DVVLEILPARKHYWIGKVDMAVVDSFGRP 441

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE---- 330
                  I+V        + +     T    D K + + +     G++  V   +     
Sbjct: 442 IENPTVQIDV--------ESAKRFDITVNDGDKKINPIILHCSPTGSVERVLCGLLEGAY 493

Query: 331 -SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            ++ +    + P  +AP ++ +I +    Q   +    +  +L   G    +DD  E IG
Sbjct: 494 LNTLEEVPPMLPTWLAPIQVRVIPVSDKHQ---EYALSVAEKLRANGIRADYDDREESIG 550

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGI---REDMSLEEVINYASHR 441
            +   A        V++G + +      V ++ + +     +E M LEE+I+     
Sbjct: 551 KKIRNAGKDWSMYVVVIGDEEMEKGNLNVTVRAKSSTKKPVKEVMKLEELISTIKSE 607


>gi|297527450|ref|YP_003669474.1| threonyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
 gi|297256366|gb|ADI32575.1| threonyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
          Length = 614

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 71/422 (16%), Positives = 141/422 (33%), Gaps = 65/422 (15%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTG---AIEMSV--------PTLQSADLWVESGRYDSYG 90
           + P     +D++           G      M          P L+ A L+    R     
Sbjct: 219 YGPHAVVIMDSIMQYSWNVVRSLGIPVYRVMGTNMFNLSEKPVLEHALLF--GDRLYELK 276

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGV 149
            +  +         +           + R  I SY+NLPF  +++   +R E R      
Sbjct: 277 VDNEK--------FVLRYAACHQQFAMLRDWIISYKNLPFGMFEVADSYRLEQRGELNLC 328

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F M D +  +   + +      +    L    ++G K + +   +          
Sbjct: 329 FRLRKFYMPDLHILNKDLDEAIKMSRIVQDKILEEIAKIGRKYVALYNVTSDFFEKHRD- 387

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                                 +  E    ++   L S++      +    + H   + D
Sbjct: 388 ----------------------VLIEFVRRENYPVLVSVIPSGIYYWVLNVEYH---IID 422

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAA 327
           +L   + ++   I++G+            + T+    G+ H+  +    I  G  R +  
Sbjct: 423 NLNRPREIATFQIDIGNG--------KRFNITYTDEKGEKHHPVIIHTAIIGGIERFIYT 474

Query: 328 VIE----SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           + +       +GK    P  +AP ++ +I IK       D  EK+  ++   G  V  DD
Sbjct: 475 IFDTAALMEREGKTPYIPTWLAPVQVRIIPIKNK---YLDYAEKVAEKIENAGFRVDIDD 531

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            GE +G +   A     P  V++G + V  + + ++ R T  ++ M  +E+I        
Sbjct: 532 RGESLGKKIRDAGREWIPYIVVIGEREVKSNTINVRIRRTNDQKVMVTDELIRILEEETK 591

Query: 444 NN 445
           N 
Sbjct: 592 NY 593


>gi|307330032|ref|ZP_07609183.1| prolyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306884293|gb|EFN15328.1| prolyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 471

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/408 (14%), Positives = 118/408 (28%), Gaps = 59/408 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +       G      P       L  E+   + +  E+  +     K
Sbjct: 41  PYGYGLWERMQQDMDARIKAVGVQNAYFPLFIPQSYLAKEADHVEGFAPELAVVTHGGGK 100

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 101 ELEEPVVVRP-------------------------------------------------- 110

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +       ++K   SY  +   +   +  +R E  P     + EF+     G T   
Sbjct: 111 --TSETIVNEYFSKWVQSYRDLPLLINQWANVVRWELRPRLFLRTTEFL--WQEGHTAHA 166

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             +D  DF        +   +     ++       A           +L E      + +
Sbjct: 167 SYEDARDFAARIHREVYARFMEDVLAMDVVLGRKTARERFAGALNTLTL-EGMMGDGKAL 225

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++G     G  ++     ++   DG+   V   S+G    R+V A++    D  G+  P 
Sbjct: 226 QLGTSHELGQNFARAFHTSYLSKDGEQELVWQTSWGS-TTRMVGALVMMHGDDNGLRIPP 284

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFP 401
            +A  ++ ++ I   D        +I   LS  G  V  DD  +   G +    +L G P
Sbjct: 285 RLASIQVVVLAI-KGDDAVLAKVREIGELLSAAGVRVHVDDRTDTPFGRRAVDWELKGVP 343

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++V VG + +      +  R+ G +E +  E +          ++ +L
Sbjct: 344 VRVEVGPRDLESGTAMVARRIPGGKEPVRAELLPELLPKVLEEDQALL 391


>gi|224134713|ref|XP_002327471.1| predicted protein [Populus trichocarpa]
 gi|222836025|gb|EEE74446.1| predicted protein [Populus trichocarpa]
          Length = 448

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/419 (14%), Positives = 118/419 (28%), Gaps = 72/419 (17%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +  +   TG   M  P       +  E+   + +  E+  +     K
Sbjct: 5   PYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPFSFIEKEASHVEGFSPELALVTIGGGK 64

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                       RP    + +  F       
Sbjct: 65  ELEEKLVV---------------------------------RPTSETIVNHMFTQWIHSY 91

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            DL P       N              L+ +     +               +  E +  
Sbjct: 92  RDL-PLMVNQWANVTRWEMRTKPFVRTLEFLWQEGHTA----------HANPEEAENEAL 140

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                +      E      I    S  E +                    E      + +
Sbjct: 141 -QMIDVYTKFAYEQAAIPVIAGRKSKAETFAG-----------ADRTYTIEAMMGDRKAL 188

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           + G     G  +S      F   +G+  +V   S+ + + R +  +I +  D  G++ P 
Sbjct: 189 QAGTSHNLGQNFSRAFGTQFMDENGERQHVWQTSWAV-STRFIGGIIMTHGDDSGLMLPP 247

Query: 343 SVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLL 398
            +AP ++ ++ I   +       +A   +   L   G  V  DD  ++  G +F   ++ 
Sbjct: 248 KIAPIQVVIVPIWKKEDEKTGVLNAASSVKKVLQSAGIKVKLDDTDQRTPGWKFNFWEMK 307

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRL-TGIREDM-------SLEEVINYASHRFSNNRPVL 449
           G PL++ +G + VS + V I  R   G +  +       S+  +  Y   +    +  L
Sbjct: 308 GVPLRIEIGPRDVSSASVVISRRDVPGKQGKVFGISMEPSI--LEAYVKDKLDEIQSSL 364


>gi|148675291|gb|EDL07238.1| threonyl-tRNA synthetase-like 2, isoform CRA_a [Mus musculus]
          Length = 365

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 79/216 (36%), Gaps = 7/216 (3%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD      +  L     H  S G   +LP G    + +   IREE
Sbjct: 142 KMMKDWEKFQEEAKSRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNALMDFIREE 199

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            ++    E+  P + ++ LW  SG +  Y   M    D         P +      +F  
Sbjct: 200 YHKRNFTEVLSPNMYNSKLWETSGHWQHYSNNMFTF-DVEKDTFALKPMNCPGHCLMFAH 258

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +S+R +P  F    +  R+EL     G+ R R F   DA+ F +  +  +    K  +
Sbjct: 259 RPRSWREMPVRFADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCMVEQIEEE--IKGCL 316

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +L+  +     S  +   + P       E    A+
Sbjct: 317 HFLQSVYSTFGFSFQLNLSTRPEHFLGEIEIWDEAE 352


>gi|170063637|ref|XP_001867188.1| bifunctional aminoacyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167881196|gb|EDS44579.1| bifunctional aminoacyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 1677

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/422 (14%), Positives = 122/422 (28%), Gaps = 73/422 (17%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
             G Y            + A    E  + G  E   P   S A L  E      +  E+  
Sbjct: 1207 SGCYILRHWSFAVWKAIKAWFDAEITKMGVKECYFPIFVSRAALEREKDHIADFAPEVAW 1266

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    +  +       PT E VM   +   I+SYR+LP          +     R+    
Sbjct: 1267 VTKSGESDLAEPIAVRPTSETVMYPAYAKWIQSYRDLPIRL------NQWNNVVRWEFKH 1320

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             + FL    +                                        +  +    F 
Sbjct: 1321 PQPFLRTREF----------------------------------------LWQEGHTAFA 1340

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              A+  E  +   + +              +    +  E++            E    + 
Sbjct: 1341 TQAEATEEVLQILELYAQVYTDLLAIPV--VRGRKTEKEKFA---GGDFTTTVEAFISAS 1395

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                    R I+     + G  +S      ++  + K+      +      R +  +I  
Sbjct: 1396 G-------RAIQGATSHHLGQNFSKMFDIVYEHPETKEKEYVYQNSWGITTRTIGVMIMV 1448

Query: 332  SHDGKGIIWPDSVAPFKISLINI----KAHDQVCR---DACEKIYARLSKVGCDVFWDDM 384
              D +G++ P  VA  +  ++         D+  +   D C+++ A L K G     D  
Sbjct: 1449 HADNQGLVLPPRVACIQAIIVPCGITANTTDEERKTLYDNCKELEAELVKAGVRCEGDYR 1508

Query: 385  GE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRF 442
                 G ++   +L G P++V +G K + + + V ++ R TG +  +  E          
Sbjct: 1509 DNYSPGWKYNHWELKGVPIRVELGFKDLKNKQFVAVR-RDTGDKITVKREAATVDIQALL 1567

Query: 443  SN 444
              
Sbjct: 1568 ET 1569


>gi|327305829|ref|XP_003237606.1| prolyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326460604|gb|EGD86057.1| prolyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 607

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 135/445 (30%), Gaps = 82/445 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +    +  +      S P   S D L 
Sbjct: 104 QQVLLKGEMLDYYDVSGCFVLKPHSFFIWEQIQSWFDAKIKQMNVKNCSFPLFVSEDVLK 163

Query: 81  VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +    +  +       PT E VM   +   I+S+R+LP    Q  
Sbjct: 164 KEKDHIEGFAAEVAWVTHAGNSPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 223

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT E +     ++                   
Sbjct: 224 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTREEAHTEVLQILQ----------------- 266

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAP 255
                      H   V                      E      I    +  E++    
Sbjct: 267 -----------HYAHVY--------------------EELLAVPVIQGQKTDKEKFAGGL 295

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y  T + +              + RGI+ G     G  +S     T +    +    +  
Sbjct: 296 YTTTVEGYIPA-----------TGRGIQGGTSHGLGQNFSKMFGITVEDPSARPDEKKPP 344

Query: 316 SYGIGA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRD 363
            +          R +  ++    D +G++ P  VA  +  ++ +                
Sbjct: 345 LHIWQNSWGLSTRTIGVMVMIHGDNRGLVLPPRVADIQTVIVPVGLGAKTPDEERAAIMA 404

Query: 364 ACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             E I   LS  G  V  D       G +F   +L G PL++  G    + S V    R 
Sbjct: 405 EIEAIATVLSAAGVRVEVDKRDGYTPGWKFNDWELKGIPLRLEFGPGESAGSFVTTSRRD 464

Query: 423 --TGI-REDMSLEEVINYASHRFSN 444
                 +  +S++++          
Sbjct: 465 IAGKEGKSSISIKDLGTAVPALLET 489


>gi|153938792|ref|YP_001392858.1| putative prolyl-tRNA synthetase [Clostridium botulinum F str.
           Langeland]
 gi|152934688|gb|ABS40186.1| putative prolyl-tRNA synthetase [Clostridium botulinum F str.
           Langeland]
 gi|295320836|gb|ADG01214.1| putative prolyl-tRNA synthetase [Clostridium botulinum F str.
           230613]
          Length = 545

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 2/196 (1%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +    +         +H +       + K     G  +G I            ATF    
Sbjct: 349 NYGRDFKGIVGEFRKIHKDSKCILCGD-KLEVNEGFVIGEIKKIEENLIKNECATFIDNK 407

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK     +    +   ++++  IE + D  GI+WP   + FK+ +      D+      E
Sbjct: 408 GKSKLFTIYKGFMDIYKIISWAIEQNKDELGIVWPMETSAFKVIVTIANVKDEQQFKVGE 467

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           KIY+ L  +G     DD  E+ G +F  ADL G P+++ VG K + ++ VEIK R +  +
Sbjct: 468 KIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKENNVEIKLRNSKEK 526

Query: 427 EDMSLEEVINYASHRF 442
           +++ ++++        
Sbjct: 527 KEIPIDQLQESIKSLL 542



 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 129/301 (42%), Gaps = 40/301 (13%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+P D E+ S KL+L+ G+I +   G+Y++ PLG   L+ +  ++  +
Sbjct: 1   MKLSKTLVHSLREDPADVEMDSQKLLLKGGLITKVDSGLYAFTPLGYSFLECIQKVVENK 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P                Y      ++++N+  ++       +  +  R+
Sbjct: 61  SKKIGGSQISIP----------------YVNNFEDVSEKNNDFILNFNEEILMFINFLRN 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY+ LP  FY+   +F  + +   G+M  ++ L +  Y   L  E  K +  ++   
Sbjct: 105 NVTSYKQLPLFFYENNTEFSYKGKNNLGIMSGKQVLREHFYIA-LDEEKDKFNKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM------------ 228
           Y  IF  + L+   +  E      D + +FI+  + G++++   K               
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNIGDSRIVACKSCNYGNEINRASSIP 218

Query: 229 DFPIPSE-----NTDFDDIISLNSIVEQWTAPYAA-TSDVHNEKLFDSLPENKRVSARGI 282
           D+ I  +       +  DI ++  + E +  PY   T  +  +   DS+        R I
Sbjct: 219 DYQIEKDLKELNKIETPDIKTIEELGEFFKVPYRKFTKTIIYKCNNDSIVAVMVRGDRDI 278

Query: 283 E 283
           +
Sbjct: 279 D 279


>gi|310641589|ref|YP_003946347.1| prolyl-tRNA synthetase [Paenibacillus polymyxa SC2]
 gi|309246539|gb|ADO56106.1| Prolyl-tRNA synthetase [Paenibacillus polymyxa SC2]
          Length = 482

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/409 (13%), Positives = 129/409 (31%), Gaps = 59/409 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   + P G +  +++   +      TG      P                +  E     
Sbjct: 39  GCIVFRPDGFEIWEHIKEAMDVRFRETGHRNAYFPM---------------FIPESFFQK 83

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           ++                                               +      E L 
Sbjct: 84  EKEHVE------------------------------------GFNPELPWVTEAGGEKLE 107

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           +       +     H Y+K   SY  +   +   +  +R E   +    + EF+     G
Sbjct: 108 ERLAIRPTSETMIGHMYSKWIQSYRDLPVLINQWANVVRWEKRTLPFLRTSEFL--WQEG 165

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            T     ++  +  +      + ++I     +   T     +      K   SL E    
Sbjct: 166 HTAHETEEEAREETMKMLEV-YREVIEEVLAIPVITGQKTPSEKFAGAKDTFSL-EAMMR 223

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             R ++ G   Y GT +++     +   +    +    S+G  + R++ A+I    D +G
Sbjct: 224 DGRAVQAGTSHYMGTNFAVAFDIKYLSRENNLEFAHTTSWGT-STRLIGALIMVHGDDRG 282

Query: 338 IIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           +  P  VAP ++ ++ I             ++++A L + G  V  DD      G +F  
Sbjct: 283 LALPPKVAPTQVIMVPIGPPKKRDAVIARADELFAELKQAGVRVKMDDRSDVSPGWKFNE 342

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ G P+++ +G + + +    +  R++G ++ +  + ++       +
Sbjct: 343 YEMRGVPVRLEIGPRDMENGVCVLVSRISGEKKIVQQDNLLEEVHAMLA 391


>gi|302854330|ref|XP_002958674.1| hypothetical protein VOLCADRAFT_84558 [Volvox carteri f.
           nagariensis]
 gi|300255999|gb|EFJ40277.1| hypothetical protein VOLCADRAFT_84558 [Volvox carteri f.
           nagariensis]
          Length = 446

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/415 (14%), Positives = 127/415 (30%), Gaps = 76/415 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + + + +       G      P L     +  E+   + +  E+  +     K
Sbjct: 5   PYGYAIWETIQSYLDGRFKELGVQNAYFPQLIPYSFITKEAEHVEGFAPELALVTKGGGK 64

Query: 103 AMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E ++  +F   ++SYR+LP                          L  
Sbjct: 65  DLEEPLVVRPTSETIINHMFAQWVQSYRDLP--------------------------LQL 98

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + +      E     + +      +  H     +     E+  +                
Sbjct: 99  NQWCNVHRWEMRTRPFVRTLEFLWQEGHTAHATAEEAEEEARRMI--------------- 143

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                   + DF I         +    S +E +                    E     
Sbjct: 144 ------DVYTDFAINM--AAMPVVPGRKSRIESFAG-----------ANCTYTIEAMMGD 184

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G     GT ++      +   + K H+V   S+G+ + RV+  +I +  D KG+
Sbjct: 185 RRALQAGTSHNLGTNFAKAFGTQYLNRESKRHFVHQTSWGV-STRVIGGIIMTHGDDKGL 243

Query: 339 IWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             P  +AP +  +I I   ++      +A +++       G  +  D+  +  G ++   
Sbjct: 244 RLPPRLAPVQAVIIPIVKKEEDRVPVNEAAQRLAEAAKVAGIRIDSDER-QTPGWKYNYW 302

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLE--EVINYASHRFSN 444
           ++ G P++V VG K V         R      G +  + +E    + +       
Sbjct: 303 EMRGVPVRVEVGPKDVQSGTCVTARRDMPGKEGKQMGVPMESAAFVAHIKGLLEE 357


>gi|146296961|ref|YP_001180732.1| glycyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145410537|gb|ABP67541.1| glycyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 434

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/435 (14%), Positives = 132/435 (30%), Gaps = 35/435 (8%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G I Q S    G+   + + PLG +  +N+  +  +   Q R   + +    L +  +
Sbjct: 13  RRGFIFQSSEIYGGLNSCWDYGPLGVEMKNNIKRLWWKANVQLRDDVVGLDSSILMNPKV 72

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG   ++   M        +      +                      F  +   F
Sbjct: 73  WEASGHLSNFADPMADCKVCKKRWRADQLSE------YKCPECGGELTEARMFNLMFKTF 126

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
              +     V+  R    +  +   L  + +        ++ +    R  +        +
Sbjct: 127 MGPVEDESAVVYLRPETAQGIFVNFLNVQQTMRKKLPFGIAQIGKSFRNEITPGNFIFRT 186

Query: 200 GPIGGDLSHEFIVL--ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                     F+     +         +    + +  +     + I +    +   A YA
Sbjct: 187 REFEQMEIEYFVKPGTDEYWHKHWIEQRINWYYKLGIKK----ENIRIREHGKDELAHYA 242

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E + ++ R            +YS      F     + +   +   
Sbjct: 243 KACVDIEYLFPMGWSELEGIANRTDFDLSRHQ---EYSGQNLTYFDDETKQRYIPYVIEP 299

Query: 318 GIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKI 368
             G  R   A +  +++ + I             ++AP K  +  +    +      ++I
Sbjct: 300 SAGVDRSFLAFLVDAYENQKIDENDSRIVLHLHPAIAPVKAGVFPL-LKREELVKKAKEI 358

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L      V +D+ G  IG ++   D +G P  + V  + + D+ V I+ R T  +  
Sbjct: 359 YNNLKYKWI-VQYDESG-SIGKRYRRQDEIGTPFGITVDYQTLEDNTVTIRDRDTMEQVR 416

Query: 429 MSLEEVINYASHRFS 443
           + +EE+I Y   +  
Sbjct: 417 VHIEEIIPYLEEKIE 431


>gi|213580910|ref|ZP_03362736.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 234

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 4/177 (2%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 61  YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 118

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P +    LW ++G +D+Y   M       ++     P +      IF   +KSY
Sbjct: 119 YQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSY 177

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           R+LP    +     R+E      G+MR R F   DA+ F    +        + + Y
Sbjct: 178 RDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQIRDEVNACIRMVY 234


>gi|168181840|ref|ZP_02616504.1| putative prolyl-tRNA synthetase [Clostridium botulinum Bf]
 gi|182674840|gb|EDT86801.1| putative prolyl-tRNA synthetase [Clostridium botulinum Bf]
          Length = 545

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 2/196 (1%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +    +         +H +       + K     G  +G I            ATF    
Sbjct: 349 NYGRDFKGIVGEFRKIHKDSKCILCGD-KLEVNEGFVIGEIKKIEENLIKNECATFIDNK 407

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK     +    +   ++++  IE + D  GI+WP   + FK+ +      D+      E
Sbjct: 408 GKSKPFTIYKGFMDIYKIISWAIEQNKDELGIVWPMETSAFKVIVTITNVKDEQQFRVGE 467

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           KIY+ L  +G     DD  E+ G +F  ADL G P+++ VG K + ++ VEIK R +  +
Sbjct: 468 KIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKENNVEIKLRNSKEK 526

Query: 427 EDMSLEEVINYASHRF 442
           +++ ++++        
Sbjct: 527 KEIPIDQLQESIKSLL 542



 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 129/301 (42%), Gaps = 40/301 (13%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+P D EI S KL+L+ G+I +   G+Y++ PLG   L+ +  ++   
Sbjct: 1   MKLSKTLVHSLREDPADVEIDSQKLLLKGGLITKVDIGLYAFTPLGYSFLEGIQKVVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P                Y      ++++N++ ++          +  R+
Sbjct: 61  SKKIGGSKISIP----------------YVNNFEDVSEKNNEFILNFNEEILRFINFLRN 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY+ LP  FY+   +F  + +   G+M  ++ ++++ +   L  E  K    ++   
Sbjct: 105 NVTSYKQLPLFFYENNTRFSYKGKNNLGIMGGKQ-VLREYFYMALDEENDKFYKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM------------ 228
           Y  IF  + L+   +  E      D + +FI+  + G++++   K               
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNMGDSRIVACKSCNYGNEVNRVSSIP 218

Query: 229 DFPIPSE-----NTDFDDIISLNSIVEQWTAPYAA-TSDVHNEKLFDSLPENKRVSARGI 282
           D+ I  +       +  DI ++  + E +  PY   T  +  +   DS+        R I
Sbjct: 219 DYQIEKDLKELNKIETPDIKTIEELGEFFKVPYRKFTKTIIYKSNNDSIVAVMVRGDRDI 278

Query: 283 E 283
           +
Sbjct: 279 D 279


>gi|119953163|ref|YP_945372.1| glycyl-tRNA synthetase [Borrelia turicatae 91E135]
 gi|119861934|gb|AAX17702.1| glycyl-tRNA synthetase [Borrelia turicatae 91E135]
          Length = 448

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/438 (13%), Positives = 138/438 (31%), Gaps = 29/438 (6%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G + Q S       G++ + PLG +   N+               +       L   +
Sbjct: 16  RKGFVFQSSEIYGGLSGVWDYGPLGIELKKNIQKEWWNTMV-YLHENVVGLDSSILMRPE 74

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           +W  SG  DS+   ++   +  ++  I         +        +        ++  + 
Sbjct: 75  VWEASGHVDSFLDLLVDCKNCKNRFRIDSIDLSNGCSSCNSIGTFTAPRSFNLMFKTNIG 134

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
             ++      +       +   +   L     K  +    V       R  + +      
Sbjct: 135 AVEDSSNEIYLRPETAQGIFVNFRNVLDSTRLKVPFGIAQV---GKAFRNEIVAKNFIFR 191

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +          F+      +   +  +  M+F I +     D++       ++  A YA 
Sbjct: 192 TCEFEQMEMQFFVHPNQMSDWYYYWQQKRMNFFIETLGIRSDNLRFKEHKGDEL-AHYAK 250

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSY 317
            +     K      E + +  RG     +         P    +     G  +   +   
Sbjct: 251 AAVDIEYKFPFGFQEIEGIHNRGNYD--LSQHAKFCGKPKLFEYHDLTSGDKYIPYVIET 308

Query: 318 GIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            +G  R V   +  ++  + +              +AP+K++++ +   D    +   K+
Sbjct: 309 SLGLTRSVLMTLCDAYAHEELEGEGKRIVLRLHPKLAPYKVAILPLVKKD-GLPELARKV 367

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           + + S     +F+DD    IG ++   D +G P  V V    + +  V ++ R +  +  
Sbjct: 368 FMQFSD-DFYMFYDD-NGTIGKRYRRQDEIGTPYCVTVDYDTIENRTVTLRDRDSMAQIR 425

Query: 429 MSLEEVINYASHRFSNNR 446
           + ++++ +Y      N +
Sbjct: 426 IPIDDLYSYIRTEILNYK 443


>gi|309808028|ref|ZP_07701947.1| anticodon binding domain protein [Lactobacillus iners LactinV
           01V1-a]
 gi|308168711|gb|EFO70810.1| anticodon binding domain protein [Lactobacillus iners LactinV
           01V1-a]
          Length = 275

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 103/299 (34%), Gaps = 31/299 (10%)

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G+ R RE  + D ++F    +     + K+    + ++    +     R           
Sbjct: 3   GLQRVREMTLNDGHTFVELDQVQSE-FAKILKLIMEVYRDFDITDYYFRLS--------- 52

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                       + F + +  +          DD+       E   A Y    D+  +  
Sbjct: 53  ----YRDPKNTDKYFANDEMWERSQKMLKGAMDDLGLEYVEAEGEAAFYGPKLDIQTKT- 107

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVA 326
             +L  ++ +S   ++    F    ++    + ++ G DG++H    +    +G M    
Sbjct: 108 --ALGNDETMSTIQLD----FMLPERF----NLSYVGKDGEEHRPVMVHRGIVGTMERFI 157

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A +   + G    W        + +  I  ++    +  + +  +L K+G     D   E
Sbjct: 158 AYLTEIYKGAFPTWLA-----PLQVKIIPVNNDAHGEYAQNVKDQLMKLGFRAEVDFRNE 212

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++G +   A     P  +++G   +  + V ++   +  +E  +L E ++  S   ++ 
Sbjct: 213 KLGYKIREAQTQKVPYTLVLGDDELQHNSVNVRKYGSEDQESKALSEFVSELSADVASY 271


>gi|301626888|ref|XP_002942619.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Xenopus
           (Silurana) tropicalis]
          Length = 683

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 68/206 (33%), Gaps = 6/206 (2%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD         L     H  S G   +LP G    + +   I+ E  + G  E+ 
Sbjct: 324 EEAINRDHRKIGRDQELY--FFHDLSPGSCFFLPRGAHIYNVLIDFIKSEYRKRGFTEVI 381

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +  LW  SG ++ YGK M       +      P +      +F    +S+R LP 
Sbjct: 382 TPNMYNNKLWETSGHWEHYGKNMFSFTVEEET-FSLKPMNCPGHCLMFDHRPRSWRELPL 440

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +      N        ++   G
Sbjct: 441 RLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCSMEQLEGE-INGCLDFLRTVYSVFG 499

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLAD 215
                    + P       E    A+
Sbjct: 500 FTFKLF-LSTRPEQFMGEEEVWQQAE 524


>gi|315185720|gb|EFU19487.1| glycyl-tRNA synthetase [Spirochaeta thermophila DSM 6578]
          Length = 443

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/436 (13%), Positives = 139/436 (31%), Gaps = 28/436 (6%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G + Q S    G+   + + PLG +  +N+      E    R   + +    L    +
Sbjct: 15  RRGFVFQSSEVYGGLSSAWDYGPLGVELKNNIERFWWNEMVRKRRNIVGLDAAILMHPKV 74

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG  +++   ++   D  +    +     ++         K     P  F  +    
Sbjct: 75  WEASGHVENFHDPLV---DCKECKARFRADQIDLSAPCPECGAKDSFTEPRQFNLMFKTH 131

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
              +     V+  R    +  Y        S        ++ +    R  + +      +
Sbjct: 132 LGPVEDESTVVYLRPETAQGIYVNYKNCLQSSRLKVPFGIAQVGKAFRNEIVTKNFIFRT 191

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                     F+  ++  +   +   + M++    +     + +  +       A YA  
Sbjct: 192 CEFEQMEMQFFVHPSEDKKWFDYWKAERMEY--YRKMGIRPEKLRFHQHGPDELAHYAKE 249

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     +      E + V  R           +++S    + F     + +   +     
Sbjct: 250 AVDIQYEFPFGWRELEGVHNRTDYDLSRH---SQFSGKDLSYFDDETRERYIPYIIETSA 306

Query: 320 GAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R V  V+  ++D + +          +   +AP  +++  +   D       + +  
Sbjct: 307 GLTRSVLMVLSDAYDEEELENGEKRTVLRFHPLIAPITVAVFPLMRRD-GLDTYAQNLEE 365

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L     + F+D+ G  IG ++   D +G P  + V  + + D  V +++R +  +  + 
Sbjct: 366 ELRDH-FNTFYDESGA-IGRRYRRQDEVGTPYCITVDYQTLEDDTVTLRYRDSMEQVRVH 423

Query: 431 LEEVINYASHRFSNNR 446
             EV++         R
Sbjct: 424 RNEVVSAIQQAIREYR 439


>gi|240047193|ref|YP_002960581.1| prolyl-tRNA synthetase [Mycoplasma conjunctivae HRC/581]
 gi|239984765|emb|CAT04739.1| Prolyl-tRNA synthetase [Mycoplasma conjunctivae]
          Length = 480

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 139/407 (34%), Gaps = 67/407 (16%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G     ++  ++           +  P+L     +  E      +  E+L +    +K
Sbjct: 41  PNGYAIWSSIQDVLNFIFQELSIKNVYFPSLIPQSFIEKEKQHVKGFAPELLTITHVGEK 100

Query: 103 AM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E +  D F+  I     LP    Q     R E +     +R+ EFL +
Sbjct: 101 KLPENIYLRPTSEVLFADFFKKEIAHKNKLPILLNQWCQVTRWE-KTTNPFLRTTEFLWQ 159

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++       +K     M                                        E
Sbjct: 160 EGHTVHEDSSKAKKFAKIMI---------------------------------------E 180

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
              F  + F+  P+         I+   +  E++                    E     
Sbjct: 181 NYKFIVEKFLAIPV---------IVGKKTQKERFAG-----------AKTTYTIEAMMKD 220

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            R ++ G   Y G  +S     TFK  D +  YV   S+G+ + R++ A+I +  D +GI
Sbjct: 221 GRALQAGTSHYLGQNFSKNFDITFKNKDNQLEYVYQTSWGV-STRLIGALIMTHGDDRGI 279

Query: 339 IWPDSVAPFKISL-INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I P ++A +K+ +           + A  K+   L         D    Q+G + A +++
Sbjct: 280 IIPPAIAEYKVDILAFFVNKHPNLKKAILKLSDELDDFHITNRVDLSDNQVGFKIANSEV 339

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           LG P+++ +G + +   +V +  R T  ++ +   +++N+    F  
Sbjct: 340 LGTPVRIEIGPRDLEAKQVVVVRRDTLEKKIVPTSQIVNHLEQLFQE 386


>gi|258573385|ref|XP_002540874.1| prolyl-tRNA synthetase [Uncinocarpus reesii 1704]
 gi|237901140|gb|EEP75541.1| prolyl-tRNA synthetase [Uncinocarpus reesii 1704]
          Length = 586

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/422 (15%), Positives = 123/422 (29%), Gaps = 79/422 (18%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P      + + A   ++  + G    S P   S D L  E    + +  E+  +    + 
Sbjct: 83  PHSFFIWEEIQAWFNDKIKKMGVKNCSFPLFVSEDVLKKEKDHIEGFAAEVAWVTHAGNN 142

Query: 103 AMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E VM   +   I+S+R+LP    Q     R E +     +R+REFL +
Sbjct: 143 QLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLWQ 202

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           + ++  LT   ++    ++                                         
Sbjct: 203 EGHTAHLTEAAAREEVLQILQ--------------------------------------H 224

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                 +      I  + TD +               Y  T + +              +
Sbjct: 225 YAHVYEQLLAVPVIQGQKTDKEKFA---------GGLYTTTVEGYIPA-----------T 264

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA-----MRVVAAVIESSH 333
            RGI+ G     G  +S   + T +    K    +   Y          R +  ++    
Sbjct: 265 GRGIQGGTSHGLGQNFSKMFNITVEDPTSKPDEKKPPLYVWQNSWGLSTRTLGVMVMVHS 324

Query: 334 DGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDM-G 385
           D +G++ P  VA  +  ++ +                  E + + L   G     D   G
Sbjct: 325 DNRGLVLPPRVADIQTVIVPVGLTAKTPDDVRSSINAEIEHLRSVLEAAGVRAEVDKREG 384

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMSLEEVINYASHRF 442
              G +F   +L G PL++  G    +   V    R       +  + + E+        
Sbjct: 385 YSPGWKFNDWELKGIPLRLEFGPGESAGGFVTTSRRDIPGKEGKSSIPISELATAVPALL 444

Query: 443 SN 444
             
Sbjct: 445 ET 446


>gi|256384016|gb|ACU78586.1| proline--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384848|gb|ACU79417.1| proline--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455440|gb|ADH21675.1| proline--tRNA ligase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 474

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/410 (12%), Positives = 124/410 (30%), Gaps = 62/410 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  + +   + EE  +     +  P L    L+  E    + +  E+  +
Sbjct: 36  GTMIFRPYGYRIWELIQKYLDEEFKKINVDNVYFPLLIPESLFNKEKDHIEGFSPEIATV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               +K +                                                    
Sbjct: 96  TKVGEKQLEE-------------------------------------------------- 105

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             + +    +       ++    SY  +          MR E        + EF+     
Sbjct: 106 --NLFIRPTSEVVMMDYFSNEINSYRDLPLIYNQWCNVMRWEKTTRPFLRTSEFL--WQE 161

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T      +  DF +   N  ++       ++                K   ++ E+  
Sbjct: 162 GHTVHSSYNEAEDFCLKILNI-YEKFAKDILLLPVICGKKTEKEKFAGAKDTYTI-ESLM 219

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I +  D  
Sbjct: 220 FDGQALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALIMTHSDDN 278

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           G+    S        I    + +      E I  +LS     +  D+  +  G + + A+
Sbjct: 279 GL-VLPSKISPIQIQIIQIKNTEQIDQVVEIIKDKLSD--YRIDVDNSDKSFGFKISEAE 335

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHRFSNN 445
           + G P+++ +G + + ++++ I  R     +  +  ++V         + 
Sbjct: 336 IKGIPIRIEIGPRDLENNQITISRRDQQENKIKIDYKDVKKVVDQMIKDY 385


>gi|218677881|ref|ZP_03525778.1| threonyl-tRNA synthetase [Rhizobium etli CIAT 894]
          Length = 340

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 77/221 (34%), Gaps = 17/221 (7%)

Query: 8   LPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L +   RD      ++ L      +   G+  W   G +    + A +R        
Sbjct: 122 LHMLAEAEKRDHRKLGREMDLF--HFQEEGPGVVFWHGKGWRIFQTLVAYMRRRL-AVDY 178

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEML-----------RLADRNDKAMIYGPTHEEVMT 115
            E++ P +    LW  SG +  Y + M               + +++     P +     
Sbjct: 179 EEVNAPQVLDTSLWETSGHWGWYQENMFAVKSAHAMTHSEDKEADNRVFALKPMNCPGHV 238

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSY 174
            IF+  +KSYR LP    +  L  R E      G+MR R F   DA+ F    + +    
Sbjct: 239 QIFKHGLKSYRELPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECL 298

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                  L ++   G K I ++  + P     S      A+
Sbjct: 299 KIN-DLILSVYEDFGFKEIVVKLSTRPEKRVGSDALWDRAE 338


>gi|237796966|ref|YP_002864518.1| putative prolyl-tRNA synthetase [Clostridium botulinum Ba4 str.
           657]
 gi|229262943|gb|ACQ53976.1| putative prolyl-tRNA synthetase [Clostridium botulinum Ba4 str.
           657]
          Length = 545

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 2/196 (1%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +    +         +H +       + K     G  +G I            ATF    
Sbjct: 349 NYGRDFKGIVGEFRKIHKDSKCILCGD-KLEVNEGFVIGEIKKIEENLIKNECATFIDNK 407

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK     +    +   ++++  IE + D  GI+WP   + FK+ +      D+      E
Sbjct: 408 GKSKPFTIYKGFMDIYKIISWAIEQNKDELGIVWPMETSAFKVIVTITNVKDEQQFRVGE 467

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           KIY+ L  +G     DD  E+ G +F  ADL G P+++ VG K + ++ VEIK R +  +
Sbjct: 468 KIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKENNVEIKLRNSKEK 526

Query: 427 EDMSLEEVINYASHRF 442
           +++ ++++        
Sbjct: 527 KEIPIDQLQESIKSLL 542



 Score = 97.1 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 79/432 (18%), Positives = 161/432 (37%), Gaps = 67/432 (15%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ SK  +  L+E+P D EI S KL+L+ G+I +   G+Y++ PLG   L+ +  ++   
Sbjct: 1   MKLSKTLVHSLREDPADVEIDSQKLLLKGGLITKVDIGLYAFTPLGYSFLEGIQKVVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P                Y      ++++N++ ++          +  R+
Sbjct: 61  SKKIGGSKISIP----------------YVNNFEDVSEKNNEFILNFNEEILRFINFLRN 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY+ LP  FY+   +F  + +   G+M  ++ ++++ +   L  E  K    ++   
Sbjct: 105 NVTSYKQLPLFFYENNTRFSYKGKNNLGIMGGKQ-VLREYFYMALDEENDKFYKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM------------ 228
           Y  IF  + L+   +  E      D + +FI+  + G++++   K               
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNMGDSRIVACKSCNYGNEVNRVSSIP 218

Query: 229 DFPIPSE-----NTDFDDIISLNSIVEQWTAPYAA-TSDVHNEKLFDSLPENKRVSARGI 282
           D+ I  +       +  DI ++  + E +  PY   T  +  +   DS+        R I
Sbjct: 219 DYQIEKDLKELNKIETPDIKTIEELGEFFKVPYRKFTKTIIYKSNNDSIVAVMVRGDRDI 278

Query: 283 EVGH-IFYFGTKYSL--------------------PMSATFKGADGKDHYVQMGSYGIGA 321
           +    I   G   SL                    P++         +   +M ++ +GA
Sbjct: 279 DESKVIKKLGNIKSLELAGEDIVRQATNAEIGFAGPINLKVDKILIDEEITKMNNFMVGA 338

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRD-----ACEKIYARLSKV 375
                     ++                    I   D+    +       +KI   L K 
Sbjct: 339 NETCYHYENVNYGRDFKGIVGEFRKIHKDSKCILCGDKLEVNEGFVIGEIKKIEENLIKN 398

Query: 376 GCDVFWDDMGEQ 387
            C  F D+ G+ 
Sbjct: 399 ECATFIDNKGKS 410


>gi|170759933|ref|YP_001788845.1| putative prolyl-tRNA synthetase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406922|gb|ACA55333.1| putative prolyl-tRNA synthetase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 545

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 80/196 (40%), Gaps = 2/196 (1%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +    +         +H +       + K     G  +G I            ATF    
Sbjct: 349 NYGRDFKGIVGEFRKIHKDSKCILCGD-KLEVNEGFVIGEIKKIEENLIKNECATFIDNK 407

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK     +    +   ++++  IE + D  GI+WP   + FK  +      D+      E
Sbjct: 408 GKSKAFTIYKGFMDIYKIISWAIEQNKDELGIVWPMETSAFKAIVTIANVKDEQQFKVGE 467

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           KIY+ L  +G     DD  E+ G +F  ADL G P+++ VG K + ++ VEIK R +  +
Sbjct: 468 KIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKENNVEIKLRNSKEK 526

Query: 427 EDMSLEEVINYASHRF 442
           +++ ++++        
Sbjct: 527 KEIPIDQLQESIKSLL 542



 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 124/293 (42%), Gaps = 28/293 (9%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M+ S+  +  L+E+P D E+ S KL+L+ G+I +   G+Y++ PLG   L+ +  ++   
Sbjct: 1   MKLSETLVHSLREDPADIEMDSQKLLLKGGLITKVDSGLYAFTPLGYSFLECIQKVVENN 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             + G  ++S+P                Y      ++++N++ ++       +  +  R+
Sbjct: 61  SKKIGGSKISIP----------------YVNNFEDVSEKNNEFILNFNEKVLMFINFLRN 104

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           ++ SY+ LP  FY+  ++F  + +   G+M  ++ ++++ +   L  E  K +  ++   
Sbjct: 105 NVTSYKQLPLFFYENNIEFSYKGKNNLGIMSGKQ-VLREHFYMVLDEEKDKFNKKELIKL 163

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  IF  + L+   +  E      D + +FI+  + G++ +   K        +  +   
Sbjct: 164 YKNIFEIMNLQYNMVEDEL-----DGTIKFIIYNNIGDSSIVACKSCNYGNEINRASSIP 218

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           D      + E          +  + K  D L E  +V  R      I+     
Sbjct: 219 DHQIEKDLKE------LNKIETPDIKTIDELGEFFKVPYRKFTKTIIYKCDND 265


>gi|187918238|ref|YP_001883801.1| glycyl-tRNA synthetase [Borrelia hermsii DAH]
 gi|238689287|sp|B2S075|SYG_BORHD RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|119861086|gb|AAX16881.1| glycyl-tRNA synthetase [Borrelia hermsii DAH]
          Length = 445

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/438 (13%), Positives = 136/438 (31%), Gaps = 29/438 (6%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G + Q S       G++ + PLG +   N+     +         +       L  ++
Sbjct: 13  RKGFVFQSSEVYGGLSGVWDYGPLGIELKQNIQKEWWKNMV-YSHENVVGLDSSILMRSE 71

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           +W  SG  +S+ + ++   +  ++                 S         F        
Sbjct: 72  VWTASGHVESFAELLVDCKNCKNR-FKIDSIDFSKGCPNCNSMGTFTDPRSFDLMFKTNI 130

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
              E       +R      +  +        S        ++ +    R  + +      
Sbjct: 131 GAVEDSSNEIYLR--PETAQGIFVNFRNVLDSTRLKVPFGIAQVGKAFRNEIVAKNFIFR 188

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +          F+      +   +  +  ++F I       D++       ++  A YA 
Sbjct: 189 TCEFEQMEMQFFVHPNQMDDWYYYWQQKRLNFFIEILGIKSDNLRFKEHKGDEL-AHYAK 247

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSY 317
            +     K      E + +  RG     +         P    +     G  +   +   
Sbjct: 248 AAIDIEYKFPFGFQEIEGIHNRGNYD--LSQHAKFCGKPKLFEYHDLISGDRYIPYVIET 305

Query: 318 GIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            +G  R V   +  ++  + +              +AP+K++++ +   D    +   K+
Sbjct: 306 SLGLTRSVLMTLCDAYAHEELEGGDKRIVLRLHPKIAPYKVAILPLVKKD-GLPELARKV 364

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           + + S     +F+DD    IG ++   D +G P  V V    + +  V ++HR T  +  
Sbjct: 365 FMQFSD-DFYMFYDD-NGTIGKRYRRQDEIGTPYCVTVDYDSIENKTVTLRHRDTMTQVR 422

Query: 429 MSLEEVINYASHRFSNNR 446
           + + ++ +Y      N +
Sbjct: 423 IPINDLYSYVRTEILNYK 440


>gi|158522069|ref|YP_001529939.1| prolyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
 gi|158510895|gb|ABW67862.1| prolyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
          Length = 508

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/437 (15%), Positives = 134/437 (30%), Gaps = 87/437 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +N+   +       G      P     + L  E+   + + KE   +
Sbjct: 38  GCMVIKPWGYAIWENIRQALDGMFKAAGVKNAYFPLFIPLEFLEREAEHVEGFAKECAVV 97

Query: 97  ADRN--------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
                              + ++  PT E ++ + F   +KSYR+LP    Q     R E
Sbjct: 98  THHRLEAKDGRLVPAGELTEPLVVRPTSETIIGESFSRWVKSYRDLPVLINQWANVVRWE 157

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           +R R  + R+ EFL ++ ++       +      M   Y ++                  
Sbjct: 158 MRTRIFL-RTSEFLWQEGHTVHADAAEAMELARHMLNLYEKLATDY-------------- 202

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                                        IP    +  D       VE +          
Sbjct: 203 ---------------------------LAIPVIKGNKSDSERFPGAVETF---------- 225

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                     E      + ++ G   + G  ++      F+   GK+      S+G+ + 
Sbjct: 226 --------CIEAMMQDRKALQAGTSHFLGQNFARASKILFQSEQGKEELAWTTSWGV-ST 276

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCD- 378
           R++  +I    D  G+I P ++AP  + L+ I   D   +      + + ARL +     
Sbjct: 277 RLIGGLIMCHADDDGMIMPPAIAPAHVVLLPIFKKDSDRETVMAYTDTLAARLREKQYMG 336

Query: 379 ----VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI--KHRLTGIREDMSLE 432
               V  D      G++       G PL+V +G K +    V +  +      +  +  +
Sbjct: 337 RPVGVEIDTRDIG-GARGWEWIKKGIPLRVEIGPKDIEKQSVFVGRRDMGHREKMSVPTD 395

Query: 433 EVINYASHRFSNNRPVL 449
             +   +   +  +  L
Sbjct: 396 RFVEDIADTLAAVQHTL 412


>gi|328876572|gb|EGG24935.1| prolyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 615

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/405 (15%), Positives = 118/405 (29%), Gaps = 69/405 (17%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGR 85
           R  M+  +   G Y   P      + +      E  + G      P   S   L  E   
Sbjct: 123 RAEMVDYYDVSGCYILRPWSYSIWEQIQGFFDGEIKKLGVQNAYFPLFVSEKALATEEDH 182

Query: 86  YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +       +       PT E +M   + + I+S+R+LP    Q     R 
Sbjct: 183 IEGFAPEVAWVTKSGQSELSEPIAIRPTSETIMYPAYANWIRSHRDLPLKLNQWVNVVRW 242

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +RSREFL                                             
Sbjct: 243 EFKRPVPFLRSREFL--------------------------------------------- 257

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                 H      +  + +VF                       +   +     Y +T +
Sbjct: 258 --WQEGHTVYATKEEADKEVFNILRLYKRVYEDLLAVPVVEGIKSEKEKFAGGLYTSTIE 315

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                             R I+       G  +S   +  F+  DGK       S+G+  
Sbjct: 316 GFIPSNG-----------RAIQAATSHALGQNFSKMFNIEFENTDGKKALAWQNSWGL-T 363

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCD 378
            R +  ++    D  G++ P  +AP ++ ++     D   +   +   ++ A L   G  
Sbjct: 364 TRSIGVMVMVHGDDNGLVLPPRIAPIQVVILPFYFKDTSSEEIDNKAAEVLALLQAAGIR 423

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              D+  G     +    +L G P+++ +G K + +  V    R 
Sbjct: 424 AQVDNRTGYSPRDKHVHWELKGVPIRIEIGPKDLVNKVVVFCRRD 468


>gi|126465876|ref|YP_001040985.1| threonyl-tRNA synthetase [Staphylothermus marinus F1]
 gi|166225505|sp|A3DN67|SYT_STAMF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126014699|gb|ABN70077.1| threonyl-tRNA synthetase [Staphylothermus marinus F1]
          Length = 614

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/419 (15%), Positives = 134/419 (31%), Gaps = 59/419 (14%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTG---AIEMSV--------PTLQSADLWVESGRYDSYG 90
           + P     ++++           G      M          P L+ A L+    R     
Sbjct: 219 YGPHAVIIMESIMQYSWNIVRSLGIPVYKVMGTNMFNLSEKPVLEHALLF--GDRLYELK 276

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGV 149
            +  +         +           + R  I SY+NLPF  +++   +R E R      
Sbjct: 277 VDNEK--------FVLRYAACHQQFAMLRDWIISYKNLPFGMFEVADSYRLEQRGELNLC 328

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R R+F M D +  +     +      +    L    ++G K + +   +          
Sbjct: 329 FRLRKFYMPDLHILNRDLNEAIKISRIVQDKILEEIAKIGRKYVALYNVTSDFFDKYRD- 387

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                                 I  E    ++   L S++      +    + H   + D
Sbjct: 388 ----------------------ILIEFVRRENYPVLVSVIPSGIYYWVLNVEYH---IID 422

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAA 327
           +L   + ++   I++G+            + T+    G+ H+  +    I  G  R +  
Sbjct: 423 NLNRPREIATFQIDIGNG--------ERFNITYTDEKGEKHHPVIIHTAIIGGIERFIYT 474

Query: 328 VIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           + +++   +       +  +   +   I        D  EK+  ++   G  V  DD GE
Sbjct: 475 IFDTAALMEKEGKTPYIPTWLAPVQVRIIPIKNEYLDYAEKVAEKIENAGFRVDIDDRGE 534

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +G +   A     P  V++G + V  + + ++ R T  ++ M  +E+I        N 
Sbjct: 535 SLGKKIRDAGREWIPYIVVIGEREVRSNTINVRIRRTNDQKVMVTDELIRILEEETKNY 593


>gi|284161335|ref|YP_003399958.1| glycyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
 gi|284011332|gb|ADB57285.1| glycyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
          Length = 567

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 85/554 (15%), Positives = 163/554 (29%), Gaps = 130/554 (23%)

Query: 24  KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQS 76
           +++ R G   Q         G   + PLG      +  I R+    R  A+E+  PT+  
Sbjct: 6   EMLTRRGFFWQSFEIYGGMAGFVDYGPLGNALRRKIENIWRKHFVVRERAVEIDTPTVCV 65

Query: 77  ADLWVESG-------------------RYDSYGKEMLRLADRNDKA-------------- 103
            +++V SG                   R D Y K++L +    +                
Sbjct: 66  EEVFVASGHVSCFTDVAIECESCGRVFRADHYIKDVLGIEIEPNIETVKEIIETYDLKCS 125

Query: 104 ---------------------------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
                                       +   T + +  D  R        LPF   QI 
Sbjct: 126 CGGKFKEPFLFNLMFSTTIGPGKGKKGYLRPETAQGIFIDFRRLLEYFRHKLPFGVAQIG 185

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDL--------------------------TPEGS 170
             +R+E+ PR GV+R REF   +   F                                 
Sbjct: 186 RAYRNEISPRQGVIRLREFNQAELEYFVNPREKRHPNFARYANVVVKLLDKNDVLHEVTL 245

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIP------MRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           K +  K  V +  + + +G             A+                D  + +V  +
Sbjct: 246 KEAVEKGIVCHELMAYFIGKTREFLLEVGIDEAKLRFRQHKDDERAHYAIDCWDAEVLTA 305

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPY--------------------AATSDVHN 264
             +++    ++ TD+D    +    E                                  
Sbjct: 306 YGWIEIVGIADRTDYDLKKHMEHSGEDLRVFVQFEKPIKVKRKKVIPNMKKLGPVYRQKA 365

Query: 265 EKLFDSLPE---NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
           +++   L E   +  V +  I++       TK    +    +   G+     +     G 
Sbjct: 366 KEIAKKLEEIEVDGDVESITIDLDGEKIEITKDFFEIVEVEEEIHGEKIVPHVIEPSFGL 425

Query: 322 MRVVAAVIESSHDGKGIIWPDSVA-PFKISLINIKA------HDQVCRDACEKIYARLSK 374
            R+  AV+E S D   +   +      K  +  I          +      ++I   L +
Sbjct: 426 DRITYAVLEHSFDKDVVEGEERRVLRLKRWVAPIPVAVLPLLSREPFTSKAKEIVQMLRE 485

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G    +DD G  IG ++   D +G P  + +  +   D  V I+ R T  +  + + E+
Sbjct: 486 NGFYTEYDDSG-SIGRRYRRFDEIGTPFCITIDHQTFEDETVTIRDRDTTKQVRVKISEL 544

Query: 435 INYASHRFSNNRPV 448
               +   ++++ +
Sbjct: 545 PKVLNELLTSDKDI 558


>gi|187918269|ref|YP_001883832.1| prolyl-tRNA synthetase [Borrelia hermsii DAH]
 gi|119861117|gb|AAX16912.1| prolyl-tRNA synthetase [Borrelia hermsii DAH]
          Length = 491

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/419 (15%), Positives = 131/419 (31%), Gaps = 75/419 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G    + + +I+ ++   TG      P L   + L  E      +  E+  +
Sbjct: 36  GCMVIMPYGYAIWERIKSILDDKFKETGHENAYFPLLIPYEFLEREKEHVKGFSPELAVI 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                + +                                                    
Sbjct: 96  TTAGGEELAEPLVLRP-------------------------------------------- 111

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 112 --------TSETIIWNMYSKWIKSYRDLPVKINQWANIIRWEKRTRPFLRTTEFLWQ--- 160

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-----PYAATSDVHNEKLFDSL 271
                       +    +       +      VE + A           +     +    
Sbjct: 161 ------EGHTAHETAKEALEETLFILNLYKRFVEDYLAIPVFCGQKTEREKFAGAVSTYT 214

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E      + ++ G   Y G  ++      F+   G+  YV   S+G+ + R++ A+I  
Sbjct: 215 IEALMQDKKALQAGTSHYLGLNFAKAFDVKFQNKKGEMDYVFATSWGV-STRLIGALIMV 273

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHD----QVCRDACEKIYARLSKVGCDVFWD-DMGE 386
             D KG+I P  +AP +I ++ I   D    Q   +    I+  L +    V  D D+  
Sbjct: 274 HSDNKGLILPPKIAPIEIIIVPIFKRDGDANQKILEYSIIIFNLLKEAKFRVELDRDVKN 333

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI--REDMSLEEVINYASHRFS 443
             G +FA A+L G P+++ +GS  +  + V +  R      +  +S+EE+ +   H   
Sbjct: 334 SPGFRFAAAELKGIPIRIEIGSNDIFMNCVTVARRDKDKNSKYQVSVEELSSKIRHELD 392


>gi|216263944|ref|ZP_03435938.1| glycyl-tRNA synthetase [Borrelia afzelii ACA-1]
 gi|215979988|gb|EEC20810.1| glycyl-tRNA synthetase [Borrelia afzelii ACA-1]
          Length = 445

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/439 (13%), Positives = 131/439 (29%), Gaps = 29/439 (6%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G + Q S       G++ + PLG +  +N+     +         +          ++
Sbjct: 13  RKGFVFQSSEVYGGLSGVWDYGPLGIELKENIKREWWKSMV-YLHENIVGLDSAIFMRSE 71

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           +W  SG  D +   M+   D                    +          F        
Sbjct: 72  IWKASGHIDGFSDSMVDCKDC-KSRFRADFVDLSKNCPNCKVGNNFTSPRNFNLMFKTHI 130

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
              E       +R      +  +        S        ++ +    R  + +      
Sbjct: 131 GVVEDSSSEIYLR--PETAQGIFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVAKNFIFR 188

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +          F+      E   +  ++ M+F I +      D + L +      A YA 
Sbjct: 189 TCEFEQMEMQFFVHPKQIDEWFCYWQQNRMNFFIETLKIR-PDRLRLKAHNSTELAHYAK 247

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSY 317
           ++     +      E + +  RG          +  S      +      + +   +   
Sbjct: 248 SAFDIEYEFPFGFQEVEGIHNRGNYDLTQHSKFSNNSKVF--EYHDLLTKERYVPYVIET 305

Query: 318 GIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
             G  R V   +  ++             +     +AP+KI++  +    ++  +   +I
Sbjct: 306 SAGLTRSVLMTLCDAYSEEELSDGDKRIVLRLHPKLAPYKIAIFPLVKKVELV-EVARRI 364

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L      +F+DD G  IG ++   D +G P  V V    + D  V ++ R    ++ 
Sbjct: 365 YMELCD-DFHIFYDDSG-TIGKRYRRQDEIGTPYCVTVDYNTIEDETVTVRERNNMTQKR 422

Query: 429 MSLEEVINYASHRFSNNRP 447
           + + ++ +Y      N + 
Sbjct: 423 IFINDLYSYIKTEILNYKE 441


>gi|312793587|ref|YP_004026510.1| glycyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180727|gb|ADQ40897.1| glycyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 434

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/435 (14%), Positives = 134/435 (30%), Gaps = 35/435 (8%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G I Q S    G+   + + PLG +  +N+  +  +   Q R   + +    L +  +
Sbjct: 13  RRGFIFQSSEIYGGLNSCWDYGPLGVEMKNNIKRLWWKANVQLRDDVVGLDSSILMNPKV 72

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG   ++   M        +        +E         +   R     F       
Sbjct: 73  WEASGHLSNFADPMADCKVCKKR--WRVDQLQEYKCPECGGELTEARMFNLMFKTFMGPV 130

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
            DE    +     R    +  +   +  + +        ++ +    R  +        +
Sbjct: 131 EDESAVVY----LRPETAQGIFVNFINVQQTMRKKLPFGIAQIGKSFRNEITPGNFIFRT 186

Query: 200 GPIGGDLSHEFIVL--ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                     F+     +         +    + +  +     + + +    +   A YA
Sbjct: 187 REFEQMEIEYFVKPGTDEQWHKHWIEQRINWYYKLGIKR----ENLRIREHGKDELAHYA 242

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E + ++ R            KYS      F     + +   +   
Sbjct: 243 KACVDIEYLFPMGWSELEGIANRTDFDLTQHQ---KYSGENLTYFDDETKQRYIPYVIEP 299

Query: 318 GIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKI 368
             G  R + A +  +++ + I             ++AP K ++  +    +      ++I
Sbjct: 300 SAGVDRSLLAFLIDAYEYQQIDKDDFRVVLHLHPAIAPVKAAVFPL-MKKEELVKKAKEI 358

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L      V +D+ G  IG ++   D +G P  + V  + + D  V I+ R T  +  
Sbjct: 359 YNELKYKWI-VQYDESG-SIGKRYRRQDEIGTPFGITVDYQTLEDETVTIRDRDTMEQVR 416

Query: 429 MSLEEVINYASHRFS 443
           + ++E+I Y   R  
Sbjct: 417 VHIKEIIPYLEERIE 431


>gi|150400144|ref|YP_001323911.1| threonyl-tRNA synthetase [Methanococcus vannielii SB]
 gi|166225461|sp|A6US27|SYT_METVS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150012847|gb|ABR55299.1| threonyl-tRNA synthetase [Methanococcus vannielii SB]
          Length = 622

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/423 (14%), Positives = 137/423 (32%), Gaps = 42/423 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + W P G+   D ++  +       G + +  P +            D +G+   R 
Sbjct: 218 AGHFRWYPKGKLIRDLLSDYVYNLVVENGGMPVETPVMYDLQNNAIREHADKFGERQYRF 277

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSRE 154
               +K ++           + +      ++LP   Y++    FR E R    G+ R R 
Sbjct: 278 RQ-GNKDLMLRFAACFGQFMMKKDMYLLPKHLPLKLYELSTYSFRYEQRGELVGLKRLRG 336

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++  +    +  ++   F   L+                  I    ++EF    
Sbjct: 337 FTMPDMHTVCIDMNQAMEAFENQFWMGLKTGDDFKTPY--------SIIFRFTNEFFE-- 386

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              E + +  K   ++ +        +I      +      +    D+    + DS    
Sbjct: 387 ---ENKEWFFKMAKEYKLKYGKDAILEI------LPGRKHYWVGKVDM---AVVDSFGRP 434

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIESSH 333
                  I+V     FG         T    D   H + +     G   RV+  ++E+++
Sbjct: 435 IENPTVQIDVESAQRFG--------ITVHDGDKTIHPIILHCSPTGSIERVLCGLLENAY 486

Query: 334 DGKGIIWPDSVAPF-KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                  P ++  +       +    +   +   ++  +L + G    +DD  + +G + 
Sbjct: 487 IKTLEDKPPALPTWLTPIQARVIPVSERNEEFALEVVNKLRESGIRTDFDDREDSMGKKI 546

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-----IREDMSLEEVINYASHRFSN--N 445
             A        V++G   +   K+ +  R         +E +++ E+I   +       N
Sbjct: 547 RNAGTDWVNYVVVIGDNEMESKKLTVTLREESSIKQPKKESLTVGELIEKVTSEIKGSPN 606

Query: 446 RPV 448
           RP+
Sbjct: 607 RPL 609


>gi|302206640|gb|ADL10982.1| Glycyl-tRNA synthetase [Corynebacterium pseudotuberculosis C231]
 gi|308276883|gb|ADO26782.1| Glycyl-tRNA synthetase [Corynebacterium pseudotuberculosis I19]
          Length = 461

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 148/441 (33%), Gaps = 54/441 (12%)

Query: 40  YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           + + PLG +  +N+         Q R   + +    +    +W  SG   ++   ++   
Sbjct: 34  WDYGPLGTELKENIKKQWWRTFVQGRADVVGLDSSIILPRQVWNASGHVATFTDPLVESL 93

Query: 97  -ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  +A      +E        + +    +              E +   G+M++   
Sbjct: 94  HTHKRYRADHLLEAYEAKHGHAPENGLADVPDPETGQPGSWT----EPQMFSGLMKTFLG 149

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGGDLS 207
            + +          +       F + +            ++G            I     
Sbjct: 150 PVDNEQGLHYLRPETAQGIFVNFKNVMTTARMKPPFGIAQVGKSFRNEITPGNFIFRTRE 209

Query: 208 HEFI-----VLADTG-----ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            E +     V AD       E    C   F+D  I  EN    D+       E+  A Y+
Sbjct: 210 FEQMEIEYFVPADQADEKFREWVDACWDWFVDLGINPENMRQFDVP------EEERAHYS 263

Query: 258 -ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQM 314
             T D+  +  F   P  + +   G+     +  G   K S    + F  A G+ +   +
Sbjct: 264 KGTIDMEYKFGFQGNPWGELM---GVANRTDYDLGCHIKESGEDLSYFDQATGERYVPWV 320

Query: 315 GSYGIGAMRVVAAVIESSH-------------DGKGIIWPDSVAPFKISLINIKAHDQVC 361
                G  R + A +  ++                 +     ++P K++++ +   D   
Sbjct: 321 IEPSFGLTRALMAFLVDAYCEDEAPNAKGGVDKRVVLKLDPRLSPVKVAVLPLSKKD-TL 379

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E++ A+L K   +V +D  G  IG ++   D +G P  V V    + D+ V ++ R
Sbjct: 380 TPVAEEVAAKLRKFW-NVDYDTSGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAVTVRER 437

Query: 422 LTGIREDMSLEEVINYASHRF 442
            T  +E ++L+++ +Y + R 
Sbjct: 438 DTMSQERVALDQLESYLAARL 458


>gi|111115194|ref|YP_709812.1| glycyl-tRNA synthetase [Borrelia afzelii PKo]
 gi|123047003|sp|Q0SNE2|SYG_BORAP RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|110890468|gb|ABH01636.1| glycyl-tRNA synthetase [Borrelia afzelii PKo]
          Length = 445

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/439 (13%), Positives = 131/439 (29%), Gaps = 29/439 (6%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G + Q S       G++ + PLG +  +N+     +         +          ++
Sbjct: 13  RKGFVFQSSEVYGGLSGVWDYGPLGIELKENIKREWWKSMV-YLHENIVGLDSAIFMRSE 71

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           +W  SG  D +   M+   D                    +          F        
Sbjct: 72  IWKASGHIDGFSDSMVDCKDC-KSRFRADFVDLSKNCPNCKVGNNFTSPRNFNLMFKTHI 130

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
              E       +R      +  +        S        ++ +    R  + +      
Sbjct: 131 GVVEDSSSEIYLR--PETAQGIFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVAKNFIFR 188

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +          F+      E   +  ++ M+F I +      D + L +      A YA 
Sbjct: 189 TCEFEQMEMQFFVHPKQIDEWFCYWQQNRMNFFIETLKIR-PDRLRLKAHNSTELAHYAK 247

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSY 317
           ++     +      E + +  RG          +  S      +      + +   +   
Sbjct: 248 SAFDIEYEFPFGFQEIEGIHNRGNYDLTQHSKFSNNSKVF--EYHDLLTKERYVPYVIET 305

Query: 318 GIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
             G  R V   +  ++             +     +AP+KI++  +    ++  +   +I
Sbjct: 306 SAGLTRSVLMTLCDAYSEEELSDGDKRIVLRLHPKLAPYKIAIFPLVKKVELV-EVARRI 364

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L      +F+DD G  IG ++   D +G P  V V    + D  V ++ R    ++ 
Sbjct: 365 YVELCD-DFHIFYDDSG-TIGKRYRRQDEIGTPYCVTVDYNTIEDETVTVRERNNMTQKR 422

Query: 429 MSLEEVINYASHRFSNNRP 447
           + + ++ +Y      N + 
Sbjct: 423 IFINDLYSYIKTEILNYKE 441


>gi|325678778|ref|ZP_08158376.1| glycine--tRNA ligase [Ruminococcus albus 8]
 gi|324109282|gb|EGC03500.1| glycine--tRNA ligase [Ruminococcus albus 8]
          Length = 461

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/441 (12%), Positives = 133/441 (30%), Gaps = 52/441 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+    R++  +   + +      L +   WV SG    +   ++   
Sbjct: 35  WDYGPLGVELKNNIKDAWRKKFVQENNLNVGLDSAILMNPQTWVASGHIGGFSDPLMDCK 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +   +        +   T++       + N     Y  +         +      R+F +
Sbjct: 95  ECKTRHRADNLIEDFDGTNVAG-----WSNEQMMDYIKEKSIPCPNCGKHNFTDIRQFNL 149

Query: 158 KDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRAESG 200
                  +T +     Y                             ++G           
Sbjct: 150 MFKTFQGITEDTKSERYLRPETAQGIFVNFANIQRTTRKKVPFGVAQVGKSFRNEITPGN 209

Query: 201 PIGGDLSH-----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            I           EF     T        + F    + S N   +++   +   E+    
Sbjct: 210 FIFRVREFEQMELEFFCKPGTDLEWFDYWRTFCKNFLLSLNIKEENLRLRDHSAEEL-CF 268

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQM 314
           Y+  +            E   V+ R              +      +      + +   +
Sbjct: 269 YSKATTDFEYLFPFGWGELWGVADRTDYDLTQH----INTSGKRLDYLDPETNEKYIPYV 324

Query: 315 GSYGIGAMRVVAAVIESSHDGKG------------IIWPDSVAPFKISLINIKAHDQVCR 362
               +G  R+   V+  ++D +             + +  ++APFK  ++ +        
Sbjct: 325 IEPSLGVERLFLTVVTEAYDEEDIGTPEKPDVRTVMHFHPALAPFKACVLPLSKK---LA 381

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  +K++  L      V +D+ G  IG ++   D +G P+ V      V D  V ++ R 
Sbjct: 382 EPAQKLFDTL-AKHFSVDYDEAG-SIGKRYRRQDEIGTPICVTYDFDSVEDGCVTVRDRD 439

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +E + +E+++ Y + +  
Sbjct: 440 TMEQERIKIEDLVGYIAKKIE 460


>gi|300858940|ref|YP_003783923.1| glycyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686394|gb|ADK29316.1| glycyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|302331189|gb|ADL21383.1| Glycyl-tRNA synthetase [Corynebacterium pseudotuberculosis 1002]
          Length = 473

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 148/441 (33%), Gaps = 54/441 (12%)

Query: 40  YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           + + PLG +  +N+         Q R   + +    +    +W  SG   ++   ++   
Sbjct: 46  WDYGPLGTELKENIKKQWWRTFVQGRADVVGLDSSIILPRQVWNASGHVATFTDPLVESL 105

Query: 97  -ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  +A      +E        + +    +              E +   G+M++   
Sbjct: 106 HTHKRYRADHLLEAYEAKHGHAPENGLADVPDPETGQPGSWT----EPQMFSGLMKTFLG 161

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGGDLS 207
            + +          +       F + +            ++G            I     
Sbjct: 162 PVDNEQGLHYLRPETAQGIFVNFKNVMTTARMKPPFGIAQVGKSFRNEITPGNFIFRTRE 221

Query: 208 HEFI-----VLADTG-----ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            E +     V AD       E    C   F+D  I  EN    D+       E+  A Y+
Sbjct: 222 FEQMEIEYFVPADQADEKFREWVDACWDWFVDLGINPENMRQFDVP------EEERAHYS 275

Query: 258 -ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQM 314
             T D+  +  F   P  + +   G+     +  G   K S    + F  A G+ +   +
Sbjct: 276 KGTIDMEYKFGFQGNPWGELM---GVANRTDYDLGCHIKESGEDLSYFDQATGERYVPWV 332

Query: 315 GSYGIGAMRVVAAVIESSH-------------DGKGIIWPDSVAPFKISLINIKAHDQVC 361
                G  R + A +  ++                 +     ++P K++++ +   D   
Sbjct: 333 IEPSFGLTRALMAFLVDAYCEDEAPNAKGGVDKRVVLKLDPRLSPVKVAVLPLSKKD-TL 391

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               E++ A+L K   +V +D  G  IG ++   D +G P  V V    + D+ V ++ R
Sbjct: 392 TPVAEEVAAKLRKFW-NVDYDTSGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAVTVRER 449

Query: 422 LTGIREDMSLEEVINYASHRF 442
            T  +E ++L+++ +Y + R 
Sbjct: 450 DTMSQERVALDQLESYLAARL 470


>gi|322368025|ref|ZP_08042594.1| glycyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320552041|gb|EFW93686.1| glycyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 576

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 78/562 (13%), Positives = 147/562 (26%), Gaps = 146/562 (25%)

Query: 24  KLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQS 76
           +L  R G   Q S       G Y + P G     N+    R+    + G  E+  PT+  
Sbjct: 7   ELAKRRGFFFQSSEAYGGVSGFYVYGPQGAALKRNIEDSWRDRFQVQEGHREIEAPTVMP 66

Query: 77  ADLWV-------------------ESGRYDSYGKEMLRLADRN------------DKAMI 105
             ++                    ES R D   ++   + D              +  + 
Sbjct: 67  EPVFEASGHLDTFDDMLVECPECGESHRADHLIEDNTDIEDAEAMPLSEVGDLIAEYDLH 126

Query: 106 YGPTHEEVMTDIFRSHIKSY----------------------------------RNLPFT 131
                  +  +        +                                    LPF 
Sbjct: 127 CPSCETPLAGEPVEDFNLMFETDIGPGSGHPGYLRPETAQGIFVEFPRLKEYARNQLPFG 186

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS--------------------- 170
             QI   +R+E+ PR  ++R REF   +   F                            
Sbjct: 187 ITQIGTAYRNEISPRKSIIRVREFTQAELEHFIDPETDEPPLHRVEDVEVTLYSAVEQND 246

Query: 171 --------------------KHSYNKMFVSYLRIFHRLG-----LKSIPMRAESGPIGGD 205
                                             + R+G      +     A        
Sbjct: 247 DDGDYLRTTIGEAVEEGIIASDWVAYYLGVGQEWYERIGVDMDRFRFRQHLAGERAHYAS 306

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              +     D    ++       D+ +   +   D+  ++    ++      AT D    
Sbjct: 307 DCWDAEAEIDGDWIEITGYAYRSDYDLSKHDKYSDEDFTIFRQYDEPKVVERATVDPDMS 366

Query: 266 KLFDSLPENKRVSARGIE-----VGHIFYFGTKYSLPMSATF-------------KGADG 307
            L           A  ++         F            T+                 G
Sbjct: 367 YLGPEFGGAAADIAEALQTLAERDRTAFDGDVVTVEADGDTYAIPVEKTGFSVEEVKESG 426

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGII--------WPDSVAPFKISLINIKAHDQ 359
           +     +    IG  RV+  V++ ++D   I             +AP  + +  +   D 
Sbjct: 427 EHIVPHVVEPSIGIGRVLYTVLDHAYDTDEIEGETRTRLSLDPEIAPTTVGVFPLMDKD- 485

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +    I A L   G DV +DD G  IG ++   D +G P  V V  + + D  V ++
Sbjct: 486 GMGETARDIAAELRSHGLDVVYDDSG-NIGRRYRRQDEVGTPFCVTVDYEGLEDDTVTLR 544

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R +  +  ++++++ N  +  
Sbjct: 545 ERDSTEQVRVAVDDLPNLIADL 566


>gi|203284314|ref|YP_002222054.1| prolyl-tRNA synthetase [Borrelia duttonii Ly]
 gi|201083757|gb|ACH93348.1| prolyl-tRNA synthetase [Borrelia duttonii Ly]
          Length = 491

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/420 (14%), Positives = 130/420 (30%), Gaps = 75/420 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G    + + ++I ++   +G      P L   + L  E      +  E+  +
Sbjct: 36  GCMVIMPYGYAIWERIQSVIDDKFKESGHENAYFPLLIPYEFLEREKEHVKGFSPELAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                + +                                                    
Sbjct: 96  TTAGGEELREPLVLRP-------------------------------------------- 111

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 112 --------TSETIIWNMYSKWIKSYRDLPIKINQWANIIRWEKRTKPFLRTTEFLWQ--- 160

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---PYAATSD--VHNEKLFDSL 271
                       +    ++      +      VE + A    Y   ++       +    
Sbjct: 161 ------EGHTAHETSNEAQEEALFILNLYKKFVEDYLAIPVFYGKKTEREKFAGAVSTYT 214

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E      + ++ G   Y G  ++      F+  +G+  YV   S+G+ + R++ A+I  
Sbjct: 215 IEALMQDKKALQAGTSHYLGLNFAKAFDVKFQNKNGEMSYVFATSWGV-STRLIGALIMV 273

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGE 386
             D KG+I P  +AP +I ++ I   D        +    I+  L K    V  D D   
Sbjct: 274 HSDSKGLILPPKIAPIEILIVPIFKKDDDVNKKILEYATTIFDILVKEKFRVEIDKDFKN 333

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI--KHRLTGIREDMSLEEVINYASHRFSN 444
             G +FA ++  G P+++ +GS  +    V +  + R    +  +S +E++         
Sbjct: 334 SPGFRFAASEFKGIPIRIEIGSNDILMDCVTVARRDRDKNSKYQVSFKELLPKIKEELET 393


>gi|305663857|ref|YP_003860145.1| threonyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
 gi|304378426|gb|ADM28265.1| threonyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
          Length = 617

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 122/363 (33%), Gaps = 39/363 (10%)

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             + +G+ M  +   ND+  I           I +  + SYR+LP   ++I   +R E R
Sbjct: 262 HAELFGERMYEVRIDNDR-YILRFAACYQQFSILKDWVLSYRDLPMGMFEIADSYRYEQR 320

Query: 145 PR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
                  R R F M D +      E +K     +    +    ++G +   +   +    
Sbjct: 321 GELVLGFRLRRFHMPDLHILTKDLEEAKRIAMIVRNKIVEEARKIGREYQAIYNITEDFF 380

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            + + E+IV     E +      +     P       ++  +                  
Sbjct: 381 -NTNFEYIVELVRAEGKPVLVVLYP----PGLYYWVINVEYI------------------ 417

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GA 321
              + D L   + ++   I+VG         +      +   +G + +  +    I    
Sbjct: 418 ---IIDELKRPREIATWQIDVG--------NAKRFGIKYVDENGVERHPIIIHTAILGSV 466

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVF 380
            R +  V ++    +    P ++  +   +   +    +        +   LS+ G  V 
Sbjct: 467 ERYIYMVFDTVARSESENKPPTLPLWLSPIQVRVIPISKETLTYAINVAKELSRHGIRVD 526

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD  E +G +   A +   P  +++G + +    + ++ R  GI+  M ++E I   + 
Sbjct: 527 IDDRDESLGKKIRDAGIEWIPYVIVIGEREMKTGTINVRIRKDGIQRVMHIDEFIKLINE 586

Query: 441 RFS 443
             +
Sbjct: 587 ELN 589


>gi|222529399|ref|YP_002573281.1| glycyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456246|gb|ACM60508.1| glycyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
          Length = 434

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/435 (14%), Positives = 129/435 (29%), Gaps = 35/435 (8%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G I Q S    G+   + + PLG +  +N+  +  +   Q R   + +    L +  +
Sbjct: 13  RRGFIFQSSEIYGGLNSCWDYGPLGVEMKNNIKRLWWKANVQLRDDVVGLDSSILMNPKV 72

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG   ++   M        +        +E         +   R     F       
Sbjct: 73  WEASGHLSNFSDPMADCKLCKKR--WRVDQLQEYKCPECGGELTEARMFNLMFKTFMGPV 130

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
            DE    +    + + +  +  +   T                    R  +        +
Sbjct: 131 EDESAVVYLRPETAQGIFVNFVNVQQTMRKKIPFGIAQI----GKSFRNEITPGNFIFRT 186

Query: 200 GPIGGDLSHEFIVL--ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                     F+     +         +    + +        + + +    +   A YA
Sbjct: 187 REFEQMEIEYFVKPGTDEYWHKHWIEQRINWYYNLGIRK----ENLRVREHGKDELAHYA 242

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E + ++ R            KYS      F     + +   +   
Sbjct: 243 KACVDIEYLFPMGWSELEGIANRTDFDLTQHQ---KYSGENLTYFDDETKQRYIPYVIEP 299

Query: 318 GIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKI 368
             G  R + A +  +++ + I             +++P K ++  +    +       +I
Sbjct: 300 SAGVDRSLLAFLIDAYEYQQIDKDDFRVVLHLHPAISPVKAAVFPL-MKKEELVKKAREI 358

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L      V +D+ G  IG ++   D +G P  + V  + + D  V I+ R T  +  
Sbjct: 359 YNELKYKWI-VQYDESG-SIGKRYRRQDEIGTPFGITVDYQTLEDETVTIRDRDTMEQIR 416

Query: 429 MSLEEVINYASHRFS 443
           + ++E+I Y   R  
Sbjct: 417 VHIKEIIPYLEERIE 431


>gi|308068694|ref|YP_003870299.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) [Paenibacillus
           polymyxa E681]
 gi|305857973|gb|ADM69761.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) [Paenibacillus
           polymyxa E681]
          Length = 482

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/409 (13%), Positives = 129/409 (31%), Gaps = 59/409 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   + P G +  +++   +      TG      P                +  E     
Sbjct: 39  GCIVFRPDGFEIWEHIKEAMDVRFRETGHRNAYFPM---------------FIPESFFQK 83

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           ++                                               +      E L 
Sbjct: 84  EKEHVE------------------------------------GFNPELPWVTEAGGEKLE 107

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           +       +     H Y+K   SY  +   +   +  +R E   +    + EF+     G
Sbjct: 108 ERLAIRPTSETMIGHMYSKWIQSYRDLPVLINQWANVVRWEKRTLPFLRTSEFL--WQEG 165

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
            T     ++  +  +      + ++I     +   T     +      K   SL E    
Sbjct: 166 HTAHETEEEAREETMKMLEV-YREVIEEVLAIPVITGQKTPSEKFAGAKDTFSL-EAMMK 223

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             R ++ G   Y GT +++     +   +    +    S+G  + R++ A+I    D +G
Sbjct: 224 DGRAVQAGTSHYMGTNFAVAFDIKYLSRENNLEFAHTTSWGT-STRLIGALIMVHGDDRG 282

Query: 338 IIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           +  P  VAP ++ ++ I             ++++A L + G  V  DD      G +F  
Sbjct: 283 LALPPKVAPTQVIMVPIGPPKKRDAVIARADELFAELKQAGVRVKMDDRSDVSPGWKFNE 342

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ G P+++ +G + + +    +  R++G ++ +  + ++       +
Sbjct: 343 YEMRGVPVRMEIGPRDMENGVCVLVSRISGEKKIVQQDNLVEEVHAMLA 391


>gi|15679452|ref|NP_276569.1| threonyl-tRNA synthetase [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|3334360|sp|O27504|SYT_METTH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2622569|gb|AAB85930.1| threonyl-tRNA synthetase [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 605

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/406 (15%), Positives = 129/406 (31%), Gaps = 45/406 (11%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           W P G+   D +   +       GA+ +  P +   +        + +G+   R+ +R  
Sbjct: 218 WYPRGRLIRDLLADYVYMLVTSEGAMPVETPIMYDLEDEAIRVHAEKFGERQYRMKNRK- 276

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPRF-GVMRSREFLMKD 159
             ++           I      +++NLP + Y++    FR E +    G+ R R F M D
Sbjct: 277 -ELMLRYACCFGAFRILSDSFLTWKNLPASIYELSTYSFRLEKKGEVVGLKRLRGFTMPD 335

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            ++     + S   + +     +R    L +    +              F   AD    
Sbjct: 336 LHTVCADLDQSLEEFARQVEMCMRTGQDLQVNYEVI--------------FRATAD---- 377

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
             F  +        ++      ++ +    + +           +    D L        
Sbjct: 378 --FYEEYREWVHEVADKIGKPVLLEILPSRKHY------WIAKMDFAAIDYLGRPIENPT 429

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI----ESSHDG 335
             I+V     FG  Y               + + +     G++  V   +        D 
Sbjct: 430 VQIDVESGERFGITYVNSDEEEV-------NPIILHCSPTGSIERVICSLLEKTAIEMDE 482

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           K  + P  ++P ++ ++ I    +   +    + + L         DD  E +G +   A
Sbjct: 483 KPPMLPLWLSPTQVRVLPIA---ERHMEYASDLVSELIAADVRADLDDRSETLGKKIRNA 539

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                P  V++G   +   K+ +  R TG +  M L+E+I      
Sbjct: 540 AQDWVPYVVVIGDSEME-GKLTVNVRETGEKLQMGLDELIERIRAE 584


>gi|313247748|emb|CBY15872.1| unnamed protein product [Oikopleura dioica]
          Length = 538

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 82/254 (32%), Gaps = 19/254 (7%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L T      S G   WLP G    + +   IR E  + G  E+ 
Sbjct: 297 EEAKKRDHRRIGTQQELWT--FDPVSAGSCFWLPRGAVIYNRLQDFIRSEYRKRGFKEVV 354

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +++LW  SG +  Y  +M       D      P +      +F S ++SY+ LP 
Sbjct: 355 TPNIFNSELWKTSGHWQHYEDDMFTFK-VEDDKWAMKPMNCPGHCVMFGSRLRSYKELPL 413

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            F    +  R+EL     G+ R R F   DA+ F    +            +  ++   G
Sbjct: 414 RFADFGVLHRNELSGALSGLTRVRRFQQDDAHIFCAREQIEGE-ITAALDFFKFVYDTFG 472

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                    + P             +    +V    +       + NT      +   + 
Sbjct: 473 FTFELN-LSTRP-------------EKYLGEVADWDEAEGMLKNALNTFCSTNETKWELN 518

Query: 250 EQWTAPYAATSDVH 263
               A Y    D+ 
Sbjct: 519 PGDGAFYGPKIDIK 532


>gi|312127540|ref|YP_003992414.1| glycyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311777559|gb|ADQ07045.1| glycyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 434

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/435 (14%), Positives = 129/435 (29%), Gaps = 35/435 (8%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G I Q S    G+   + + PLG +  +N+  +  +   Q R   + +    L +  +
Sbjct: 13  RRGFIFQSSEIYGGLNSCWDYGPLGVEMKNNIKRLWWKANVQLRDDVVGLDSSILMNPKV 72

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG   ++   M        +        +E         +   R     F       
Sbjct: 73  WEASGHLSNFADPMADCKVCKKR--WRVDQLQEYKCPECGGELTEARMFNLMFKTFMGPV 130

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
            DE    +    + + +  +  +   T                    R  +        +
Sbjct: 131 EDESAVVYLRPETAQGIFVNFVNVQQTMRKKLPFGIAQI----GKSFRNEITPGNFIFRT 186

Query: 200 GPIGGDLSHEFIVL--ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                     F+     +         +    + +        + + +    +   A YA
Sbjct: 187 REFEQMEIEYFVKPGTDEYWHKHWIEQRINWYYKLGIRK----ENLRVREHGKDELAHYA 242

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E + ++ R            KYS      F     + +   +   
Sbjct: 243 KACVDIEYLFPMGWSELEGIANRTDFDLTQHQ---KYSGENLTYFDDETKQRYIPYVIEP 299

Query: 318 GIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKI 368
             G  R + A +  +++ + I             ++AP K ++  +    +       +I
Sbjct: 300 SAGVDRSLLAFLIDAYEYQQIDKDDFRVVLHLHPAIAPVKAAVFPL-MKKEELVKKAREI 358

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L      V +D+ G  IG ++   D +G P  + V  + + D  V I+ R T  +  
Sbjct: 359 YNELKYKWI-VQYDESG-SIGKRYRRQDEIGTPFGITVDYQTLEDETVTIRDRDTMEQVR 416

Query: 429 MSLEEVINYASHRFS 443
           + ++E+I Y   R  
Sbjct: 417 VHIKEIIPYLEERIE 431


>gi|203287850|ref|YP_002222865.1| prolyl-tRNA synthetase [Borrelia recurrentis A1]
 gi|201085070|gb|ACH94644.1| prolyl-tRNA synthetase [Borrelia recurrentis A1]
          Length = 491

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/420 (14%), Positives = 130/420 (30%), Gaps = 75/420 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G    + + ++I ++   +G      P L   + L  E      +  E+  +
Sbjct: 36  GCMVIMPYGYAIWERIQSVIDDKFKESGHENAYFPLLIPYEFLEREKEHVKGFSPELAVV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                + +                                                    
Sbjct: 96  TTAGGEELREPLVLRP-------------------------------------------- 111

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 112 --------TSETIIWNMYSKWIKSYRDLPIKINQWANIIRWEKRTKPFLRTTEFLWQ--- 160

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---PYAATSD--VHNEKLFDSL 271
                       +    ++      +      VE + A    Y   ++       +    
Sbjct: 161 ------EGHTAHETSNEAQEEALFILNLYKKFVEDYLAIPVFYGKKTEREKFAGAVSTYT 214

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E      + ++ G   Y G  ++      F+  +G+  YV   S+G+ + R++ A+I  
Sbjct: 215 IEALMQDKKALQAGTSHYLGLNFAKAFDVKFQNKNGEMSYVFATSWGV-STRLIGALIMV 273

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGE 386
             D KG+I P  +AP +I ++ I   D        +    I+  L K    V  D D   
Sbjct: 274 HSDSKGLILPPKIAPIEILIVPILKKDDDVNKKILEYATTIFDILVKEKFRVEIDKDFKN 333

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI--KHRLTGIREDMSLEEVINYASHRFSN 444
             G +FA ++  G P+++ +GS  +    V +  + R    +  +S +E++         
Sbjct: 334 SPGFRFAASEFKGIPIRIEIGSNDILMDCVTVARRDRDKNSKYQVSFKELLPKIKEELET 393


>gi|51102320|gb|AAT95873.1| prolyl-tRNA synthetase [Entamoeba terrapinae]
          Length = 410

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/425 (16%), Positives = 139/425 (32%), Gaps = 71/425 (16%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESG 84
           +++G+I  +   G Y   P      +N+   I +   R G      P   S A L  E  
Sbjct: 5   VQSGLIEYYDISGCYILRPAAYGIWENIQQFIDKRIKRMGVENTYFPCFVSQAALKKEED 64

Query: 85  RYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E+  +       +       PT E VM   F++ I  +R+LP    Q     R
Sbjct: 65  ELNGFTPEVAWVTKSGSSDLQEPIALRPTSETVMYPAFKNWITGHRDLPLKVNQWCNVVR 124

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E    +  +R+REFL ++                             G  +   + +  
Sbjct: 125 WEFSHPYPFIRTREFLWQE-----------------------------GHTAYANQPDCE 155

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAAT 259
                +   +  + +                   +      I    S  E +  A Y+ T
Sbjct: 156 KECRQIMELYASVYE-------------------DLLAVPVIRGKKSKGETFPGAYYSLT 196

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            +                  R ++     + G  +S      F+  + K   V   S+G+
Sbjct: 197 VECIIPTNG-----------RSVQAATSHHLGQTFSKLFGIEFEDINKKKQLVYQNSWGL 245

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSKVG 376
            + R +   + +  D KGI+ P   A  ++ +I I      +        ++   L    
Sbjct: 246 -STRSIGVTVMTHGDDKGIVIPPRAANKQVVIITIHHKGSPNDEMDAKANELTEMLLDND 304

Query: 377 CDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              F D       G +F+  ++ G P+++ +G +  + SKV I  R  G + + S  +++
Sbjct: 305 IRAFADTNDMHNPGWKFSEYEMRGIPIRIELGQRDYAGSKVVIVRRDNGAKCESSWTDLV 364

Query: 436 NYASH 440
                
Sbjct: 365 ATVRK 369


>gi|183220295|ref|YP_001838291.1| glycyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167778717|gb|ABZ97015.1| Glycyl-tRNA synthetase (Glycine--tRNA ligase; GlyRS) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 494

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/452 (14%), Positives = 141/452 (31%), Gaps = 44/452 (9%)

Query: 28  RTGMI---HQHSKGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G +    +   G+   + + P G + L+N+  +  E     R   + +    L    +
Sbjct: 49  RRGFVFPGSEIYGGLSNTFDYGPNGIEVLNNLKRLWWEYFVHRRDDVLGLDSSILLHPRV 108

Query: 80  WVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMT------DIFRSHIKSYRNLP 129
           W  SG   ++   ++       +      +     E   T             K+Y    
Sbjct: 109 WEASGHISNFNDPLMDCKKCKTRVRVDKFLEDKEGEGAATGKTLEELTNTIRDKAYACPT 168

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--- 186
                     R           + E    D Y    T +G   ++  +     +      
Sbjct: 169 CGTVGSFTDARQFNLMFKTSHGASEEGATDIYLRPETAQGIFINFKNVTQIARKKVPFGI 228

Query: 187 -------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                  R  + +      +          F       E   +     MD+ +       
Sbjct: 229 AQIGKSFRNEIMARQFIFRTREFEQMEMEFFCEPGTQKEWFKYWVDYCMDWLVNVVGLKK 288

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +++       E+ +  Y+ ++     K      E   V++R           T  S  + 
Sbjct: 289 ENLRVREHEKEELS-FYSDSTSDIEYKYPFGWGELWGVASRTDYDLTQHE--TFSSEDLK 345

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKIS 350
                   K +   +    +G  R+  AV+  +++ + +          +   V+P K++
Sbjct: 346 YHDLDQK-KKYLPYVVEPALGLNRLFLAVLCDAYEEEKLEKDDIRTVLRFGKRVSPMKVA 404

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +  +   D       ++IY  L      V +DD G  IG ++   D +G P  + V    
Sbjct: 405 IFPLMKKD-GLDAKAKEIYTDLRNHWY-VDYDDSGA-IGKRYRRHDEIGTPFCITVDYDT 461

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +SD  V I+ R +  +E +++ ++ +Y   R 
Sbjct: 462 MSDGTVTIRERDSMKQERIAVADLKSYLIQRM 493


>gi|145590982|ref|YP_001152984.1| threonyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
 gi|166225486|sp|A4WIW5|SYT_PYRAR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145282750|gb|ABP50332.1| aminoacyl-transfer RNA synthetase, class II [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 608

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 112/354 (31%), Gaps = 41/354 (11%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKD 159
           D  +I           + +  + SYR+LPF   +I   +R E       + R R F M D
Sbjct: 277 DTDLILRYAACFQQFAMVKDWVISYRHLPFGLLEIADSYRHEQPGETVLLFRLRRFYMPD 336

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            + F    + +     K+     R   +LG   + +   +         E++V       
Sbjct: 337 LHIFTKDLKEAMEVTFKLHEVIFREIGKLGRTYVSLYNVTEDFY-KGHREYLV------- 388

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                          E    +    L  I+      +    + H   + D L   + ++ 
Sbjct: 389 ---------------ELARREGKPILVRILPGQKYYWVLNVEFH---IVDELGRPREIAT 430

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKG 337
             I+VG+   FG          +   + +  Y  +    I     R + AV ++    + 
Sbjct: 431 FQIDVGNAQRFG--------IKYVDENNQVRYPVIIHTAILGSVERYLYAVFDTMAKMEK 482

Query: 338 IIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                 +  +   +   +    +        +   L   G  V  DD  E +  +   A+
Sbjct: 483 EGKTPRLPTWLSPVQTRVIPVSKENLKYAMAVADLLEAEGIRVDVDDREETLSKKIRDAE 542

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN--RPV 448
               P  ++VGSK  ++  V ++ R  G +     EE+             RP+
Sbjct: 543 TAWVPYIIVVGSKEEAEGTVTVRERGGG-QYKAKAEELAKKIREEVKGYPQRPL 595


>gi|282555151|gb|ADA82671.1| ProS [endosymbiont of Camponotus pudorosus]
          Length = 77

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 50/77 (64%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          MR ++Y L  L+E P+  E  SH+LMLR+GMI Q S G+Y+WLP+G + L  V  I+R+ 
Sbjct: 1  MRATQYLLTTLKEKPKSCETISHQLMLRSGMIRQISSGLYTWLPIGLRVLRKVENIVRDA 60

Query: 61 QNRTGAIEMSVPTLQSA 77
           N  G IE+ +P  Q A
Sbjct: 61 MNNIGFIEILMPMTQPA 77


>gi|221632630|ref|YP_002521851.1| prolyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
 gi|221156093|gb|ACM05220.1| prolyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
          Length = 484

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/408 (13%), Positives = 118/408 (28%), Gaps = 65/408 (15%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    +N+ A +      TG      P       L  E+     +  E+  +    DK
Sbjct: 45  PYGFALWENMQAELDRRIKATGVQNAYFPLFIPKSFLEREAEHIKGFAPEVAWVTRGGDK 104

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
                                    L                                  
Sbjct: 105 E------------------------LEEWLAVRPTSES---------------------I 119

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-RAESGPIGGDLSHEFIVLADTGETQV 221
                     SY  + +   +    +  +  P     +        H      +  E + 
Sbjct: 120 ICPMFARWVQSYRDLPILINQWCSVVRWEERPRAFLRTLEFLWQEGHTVHATLEEAEERA 179

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
               +     + SE      I    +  E++       +          +          
Sbjct: 180 RLMLEVYRDFVESELA-IPVIPGQKTESEKFAGALRTYT----------IEAMMGGKHWA 228

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           ++       G  +      TF   +GK  YV   S+G+ + R + A++    D +G+  P
Sbjct: 229 LQSATSHNLGDHFGKVFDITFLDREGKRRYVFNTSWGL-SHRTIGAMVMVHGDDRGLKLP 287

Query: 342 DSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADL 397
             VAP ++ ++ I   D+      +  +++ A L +    V  D   ++  G +F   DL
Sbjct: 288 PRVAPIQVVIVPIWRKDEERRQVEETVDRVRAMLRRA-VRVHADLRDDKTPGWKFNDWDL 346

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDMSLEEVINYASHRFSN 444
            G P+++ +G + V+  +V +  R   G R+ + +  ++        +
Sbjct: 347 KGVPIRLEIGPRDVASDQVTLVRRDVLGQRQAVPIANLVGAVQSELES 394


>gi|312622367|ref|YP_004023980.1| glycyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202834|gb|ADQ46161.1| glycyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 434

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/435 (14%), Positives = 129/435 (29%), Gaps = 35/435 (8%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G I Q S    G+   + + PLG +  +N+  +  +   Q R   + +    L +  +
Sbjct: 13  RRGFIFQSSEIYGGLNSCWDYGPLGVEMKNNIKRLWWKANVQLRDDVVGLDSSILMNPKV 72

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG   ++   M        +        +E         +   R     F       
Sbjct: 73  WEASGHLSNFADPMADCKICKKR--WRVDQLQEYKCPECGGELTEARMFNLMFKTFMGPV 130

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
            DE    +    + + +  +  +   T                    R  +        +
Sbjct: 131 EDESAVVYLRPETAQGIFVNFVNVQQTMRKKLPFGIAQI----GKSFRNEITPGNFIFRT 186

Query: 200 GPIGGDLSHEFIVL--ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                     F+     +         +    + +        + + +    +   A YA
Sbjct: 187 REFEQMEIEYFVKPGTDEYWHKHWIEQRINWYYNLGIRK----ENLRVREHGKDELAHYA 242

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E + ++ R            KYS      F     + +   +   
Sbjct: 243 KACVDIEYLFPMGWSELEGIANRTDFDLTQHQ---KYSGENLTYFDDETKQRYIPYVIEP 299

Query: 318 GIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKI 368
             G  R + A +  +++ + I             ++AP K ++  +    +       +I
Sbjct: 300 SAGVDRSLLAFLIDAYEYQQIDKDDFRVVLHLHPAIAPVKAAVFPL-MKKEELVKKAREI 358

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L      V +D+ G  IG ++   D +G P  + V  + + D  V I+ R T  +  
Sbjct: 359 YNELKYKWI-VQYDESG-SIGKRYRRQDEIGTPFGITVDYQTLEDETVTIRDRDTMEQVR 416

Query: 429 MSLEEVINYASHRFS 443
           + ++E+I Y   R  
Sbjct: 417 VHIKEIIPYLEERIE 431


>gi|189910413|ref|YP_001961968.1| glycyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167775089|gb|ABZ93390.1| Glycine--tRNA ligase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
          Length = 466

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/452 (14%), Positives = 141/452 (31%), Gaps = 44/452 (9%)

Query: 28  RTGMI---HQHSKGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G +    +   G+   + + P G + L+N+  +  E     R   + +    L    +
Sbjct: 21  RRGFVFPGSEIYGGLSNTFDYGPNGIEVLNNLKRLWWEYFVHRRDDVLGLDSSILLHPRV 80

Query: 80  WVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMT------DIFRSHIKSYRNLP 129
           W  SG   ++   ++       +      +     E   T             K+Y    
Sbjct: 81  WEASGHISNFNDPLMDCKKCKTRVRVDKFLEDKEGEGAATGKTLEELTNTIRDKAYACPT 140

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--- 186
                     R           + E    D Y    T +G   ++  +     +      
Sbjct: 141 CGTVGSFTDARQFNLMFKTSHGASEEGATDIYLRPETAQGIFINFKNVTQIARKKVPFGI 200

Query: 187 -------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                  R  + +      +          F       E   +     MD+ +       
Sbjct: 201 AQIGKSFRNEIMARQFIFRTREFEQMEMEFFCEPGTQKEWFKYWVDYCMDWLVNVVGLKK 260

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +++       E+ +  Y+ ++     K      E   V++R           T  S  + 
Sbjct: 261 ENLRVREHEKEELS-FYSDSTSDIEYKYPFGWGELWGVASRTDYDLTQHE--TFSSEDLK 317

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKIS 350
                   K +   +    +G  R+  AV+  +++ + +          +   V+P K++
Sbjct: 318 YHDLDQK-KKYLPYVVEPALGLNRLFLAVLCDAYEEEKLEKDDIRTVLRFGKRVSPMKVA 376

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +  +   D       ++IY  L      V +DD G  IG ++   D +G P  + V    
Sbjct: 377 IFPLMKKD-GLDAKAKEIYTDLRNHWY-VDYDDSGA-IGKRYRRHDEIGTPFCITVDYDT 433

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +SD  V I+ R +  +E +++ ++ +Y   R 
Sbjct: 434 MSDGTVTIRERDSMKQERIAVADLKSYLIQRM 465


>gi|169621698|ref|XP_001804259.1| hypothetical protein SNOG_14060 [Phaeosphaeria nodorum SN15]
 gi|160704311|gb|EAT78685.2| hypothetical protein SNOG_14060 [Phaeosphaeria nodorum SN15]
          Length = 568

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/430 (14%), Positives = 121/430 (28%), Gaps = 82/430 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G Y   P      +++ A    +           P   SAD L  E    + +  E+  +
Sbjct: 85  GSYILEPSSYAIWESIKAWFDNQIKTLKVRNAYFPIFISADNLEREKEHVEGFAAEVAWV 144

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                  +       PT E  M   F   I+S+R+LP    Q     R E +        
Sbjct: 145 TKGGKSDLEKPVAVRPTSETAMYPYFARKIQSHRDLPLKLNQWNNVVRWEFK-------- 196

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
                         P      +         +  +     +    +              
Sbjct: 197 -----------HPMPFIRSREFLWQEGHTAHLTKKEASDEVLQILD-------------- 231

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDSL 271
                              +  +      +    ++ E++  A Y  T +          
Sbjct: 232 ---------------WYSDVYQDLLAVPVVKGTKTVNEKFPGADYTTTIEGFIPA----- 271

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKG----ADGKDHYVQMGSYGIG-AMRVVA 326
                 + RGI+       G  +S   + T +       GK  +V +     G   R + 
Sbjct: 272 ------TGRGIQAATSHCLGQHFSKMFNITVEDPNAKEAGKSEHVHVWQNSWGLTTRSIG 325

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDV 379
            +I +  D +G++ P  VA  ++ +I +           +      +KI   L + G  V
Sbjct: 326 VMILTHGDNRGLVIPPRVAEIQVVVIPVGVSAKMSAEDKESLYSKVKKISEDLVEAGVRV 385

Query: 380 FWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR----EDMSLEEV 434
             D   G   G +F   +L G PL++  G K      V    R    +      ++++++
Sbjct: 386 ETDYREGYSPGWKFNDWELKGIPLRIEFGPKDAEKGVVTTSRRDISDKDAARGTINVDDL 445

Query: 435 INYASHRFSN 444
                     
Sbjct: 446 TKEVPKLLEK 455


>gi|322490370|emb|CBZ25630.1| putative prolyl-tRNA synthetase, putative,bifunctional
           aminoacyl-tRNA synthetase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 715

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/410 (15%), Positives = 119/410 (29%), Gaps = 70/410 (17%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           +  MI  +   G Y   P        V   +  +  R G  +   P   S   L  E   
Sbjct: 238 KAEMIEYYDVSGCYIIRPWAYYVWKCVQRFLGGKIERLGVEDCYFPMFVSRSCLEREKDH 297

Query: 86  YDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +  E+  +    D  +       PT E VM   +   I+S+R+LP          R 
Sbjct: 298 IEGFAPEVAWVTRAGDTELEQPVAVRPTSETVMYPYYAKWIRSHRDLPVRLNMWNNVIRW 357

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E       +R+REFL ++ +                                        
Sbjct: 358 EFSHPTPFIRTREFLWQEGHCA-------------------------------------- 379

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                       A+    +V    +                       +     Y  T +
Sbjct: 380 ---------WAKAEECAKEVLDILECYASVYEQLLAVPVVRGRKTEKEKFAGGHYTTTVE 430

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG- 320
              E +            RG +       G  +       F+  +  +  +       G 
Sbjct: 431 TFIEAVG-----------RGCQGATSHNLGQNFGKMFDIRFQDPENNEQTLIPWQNSWGL 479

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           + RV+  +I    D +G++ P  VA  ++ +I +        +A + +            
Sbjct: 480 STRVIGVMIMVHGDNRGMVMPPRVASTQVIIIPVGITKDTTEEARQGLLCSC----LRAK 535

Query: 381 WDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            D       G +F   ++ G PL+V +G + +++  + +  R +G R  +
Sbjct: 536 CDLRDNYSPGWRFNHWEVKGVPLRVELGPRELAERSLAVAVRHSGARHSV 585


>gi|322807830|emb|CBZ05405.1| prolyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 412

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 2/196 (1%)

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           +    +         +H +       + K     G  +G I            ATF    
Sbjct: 216 NYGRDFKGIVGEFRKIHKDSKCILCGD-KLEVNEGFVIGEIKKIEENLIKNECATFIDNK 274

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GK     +    +   ++++ VIE + D  GI+WP   + FK+ +      D+      E
Sbjct: 275 GKSKPFTIYKGFMDIYKIISWVIEQNKDELGIVWPMETSAFKVIVTIANVKDEQQFKVGE 334

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           KIY+ L  +G     DD  E+ G +F  ADL G P+++ VG K + ++ VEIK R +  +
Sbjct: 335 KIYSSLVNIGIGTILDDRKERAGVKFKDADLWGIPIRITVG-KNIKENNVEIKLRNSKEK 393

Query: 427 EDMSLEEVINYASHRF 442
           +++ ++++        
Sbjct: 394 KEIPIDQLQESIKSLL 409


>gi|288932143|ref|YP_003436203.1| threonyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
 gi|288894391|gb|ADC65928.1| threonyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
          Length = 618

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/432 (15%), Positives = 133/432 (30%), Gaps = 47/432 (10%)

Query: 24  KLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           +LM R            G   + P G+     + + + E+    GA+E+  P +      
Sbjct: 198 ELMRRLELADYEEASDSGHLKYYPKGRLVKSLIESFVTEKCVDFGAMEVETPIMYDRA-- 255

Query: 81  VESGR-YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ-IQLK 138
             + R Y         +   + +              I  + +  YR+LP   Y+  +  
Sbjct: 256 HPTLRKYLERFPARQYIIKGDKRDFFLRFAACFGQFLIAANGVIPYRSLPLRMYELTRYS 315

Query: 139 FRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           FR E R    G+ R R F M D ++        + +  + F  Y                
Sbjct: 316 FRKEQRGELVGLRRLRAFTMPDMHTIVKD---MEEAKREFFEQYKLSVE----------- 361

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                   +  E  +  +  E  +  +KDF +           D++    ++E W   + 
Sbjct: 362 --------VLKELGIYPEDYEVAIRVTKDFFEEN-KDFIYSLVDVLKKPILIEMWDRRFF 412

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                      D+L +   +S   I+V        + +      +    G+     +   
Sbjct: 413 YFVLKFEFNFVDALDKASALSTVQIDV--------ENAERYGIYYYDEKGEKRTPLILHC 464

Query: 318 GIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSK 374
                  RV+ A++E +H          +  +       +    +   D   ++   L K
Sbjct: 465 SASGAVERVMYALLEKAHMEMEKGKLPMLPVWLSPTQVRVIPVSERHMDRALEVAEVLKK 524

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS--KVEIK---HRLTGIREDM 429
               V  DD  E +  +   A     P   ++G K +      V ++         R +M
Sbjct: 525 NKIRVDVDDREETVSKKIRDAATEWIPYIAVIGDKELESGKLTVTVRSESTLKEQKRVEM 584

Query: 430 SLEEVINYASHR 441
           S+EE++      
Sbjct: 585 SVEELVERIKKE 596


>gi|227833623|ref|YP_002835330.1| glycyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|262184626|ref|ZP_06044047.1| glycyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454639|gb|ACP33392.1| glycyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
          Length = 459

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/437 (13%), Positives = 135/437 (30%), Gaps = 46/437 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    +Q   +WV SG  + +   ++   
Sbjct: 32  WDYGPLGVELKENIKRQWWRHMVQSRDDVVGVDTSVIQPRQVWVSSGHVEVFTDPLVESK 91

Query: 98  D---RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R     +     E+   +                         E +   G++++  
Sbjct: 92  HTGKRYRADHLIEAYEEKHGHEPANGLADINDPETGQPGDWT-----EPKAFSGLLKTFL 146

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESG 200
             + D          +       F + +                  R  +        + 
Sbjct: 147 GPVDDEQGLHYLRPETAQGIFVNFKNVMTSARMKPPFGIANIGKSFRNEITPGNFIFRTR 206

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                    F+   +  E   +   D  ++ I       +++       E+ +     T 
Sbjct: 207 EFEQMEMEFFVKPGEDEEWHQYWIDDRFNWYI-DLGIKKENLRLYEHPQEKLSHYSKRTV 265

Query: 261 DVHNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           DV     F      E + V+ R      +    TK S    + F    G+     +    
Sbjct: 266 DVEYAYNFKGSKWGELEGVANRTDYDLSVH---TKGSGEDLSYFDQEAGERWTPYVIEPA 322

Query: 319 IGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDAC 365
            G  R + A +  ++D +                    +AP K++++ +   +++     
Sbjct: 323 AGLGRAMMAFLIDAYDEEEAPNAKGGTDKRVVLRLDRRLAPVKVAVLPLSKKEELSTP-A 381

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++  +L     +V +D  G  IG ++   D +G P  V      + D+ V ++ R +  
Sbjct: 382 RELANKLRANW-NVEFDVSGA-IGRRYRRQDEIGTPFCVTYDFDTLEDNAVTVRERDSME 439

Query: 426 REDMSLEEVINYASHRF 442
           +E + L+E+  Y + R 
Sbjct: 440 QERVKLDELEAYLAARL 456


>gi|126179985|ref|YP_001047950.1| prolyl-tRNA synthetase [Methanoculleus marisnigri JR1]
 gi|152112929|sp|A3CX68|SYP_METMJ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|125862779|gb|ABN57968.1| prolyl-tRNA synthetase [Methanoculleus marisnigri JR1]
          Length = 477

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 145/420 (34%), Gaps = 69/420 (16%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYG 90
           +    KG+Y W P G         ++R+  +R    E   P L    +   E+     + 
Sbjct: 30  VRYPVKGLYVWYPHGFGIRKRAYGVLRDLMDR-DHAETMFPLLIPKTEFMKEAEHIKGFE 88

Query: 91  KEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            E+  +        D  +   PT E  +  ++   I+S+ +LP   YQ+   FR E +  
Sbjct: 89  DEVYWVTHGGRNELDVPLALRPTSETAIYPMYALWIRSHTDLPLRLYQVVNTFRYETKHT 148

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
             ++R RE                                          A +       
Sbjct: 149 RPLIRLREIT------------------------------------SFKEAHTVHATR-- 170

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E     +T               +  E  D   +  + S    W     A   +  + 
Sbjct: 171 -EEAAAQVETA------------IALYREFYDTLRVPVILSRRPAWDKFPGADYTIAADT 217

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           +    P+ K      +++G +   G  +S   + T++ A+G+  Y     YGI + R +A
Sbjct: 218 IM---PDGK-----TLQIGTVHMLGDHFSRTYAITYEDANGEQQYAYQTCYGI-SERSIA 268

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           AV+    D KG++ P  VAP ++ ++ I           +   + A L   G  V  D  
Sbjct: 269 AVVSVHGDDKGLVLPPEVAPLEVVIVPIIVGKRRDEVLASAAALEAELRGAGFAVKLDAR 328

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + G+++   ++ G PL+V VG + +  + V    R TG +  +    V+   +   + 
Sbjct: 329 DMRPGAKYYHWEMRGVPLRVEVGPRDIDANTVVAVAR-TGKKTTLDRRGVVEGITSVLAE 387


>gi|72080721|ref|YP_287779.1| prolyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
 gi|114152215|sp|Q4A7Y3|SYP_MYCH7 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|71913845|gb|AAZ53756.1| prolyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
          Length = 479

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/412 (15%), Positives = 139/412 (33%), Gaps = 67/412 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G   + PLG K  +N+  I+     +     +  P L   D +  E    + +  E+L +
Sbjct: 35  GTIYFKPLGYKIWENIVKIVNAYFVKQKIENVYFPLLIPQDFIEKEKKHIEGFAPELLTI 94

Query: 97  ADRNDKAM----IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               DK +       PT E +  D F++ I     LP    Q     R E +     +R+
Sbjct: 95  TKVGDKNLVENIYIRPTSELLFADYFKAEIAKNNILPIKLNQWSQVLRWE-KTTNPFLRN 153

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++                                       I          
Sbjct: 154 TEFLWQEGHT---------------------------------------IHASKVEANQF 174

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                    +  ++++  P+         I    +  E++              +     
Sbjct: 175 AKKIARFYKYFLENYLAIPV---------ISGQKTEREKFAG-----------AVNTYTV 214

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E    + R ++     + G  ++      +K  + K       S+G+ + R++ A++   
Sbjct: 215 EAMMQNFRALQSATAHFLGQNFAKNFEIFYKNKENKSQIPFQTSWGL-STRLIGAIVMVH 273

Query: 333 HDGKGIIWPDSVAPFKISLI-NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            D  G+I+P  +AP ++ ++      +Q  +   ++I   L         DD  +QIG +
Sbjct: 274 SDDNGLIFPPKIAPIQVDILEFFSKKNQEVKIFAKRIAKILKNAKIAYKIDDTDQQIGYK 333

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              +++ G P+++ +G   V ++++ +  R    +   +++ +         
Sbjct: 334 INNSEVHGAPIRIEIGPNEVKNNQICLVRRDNHQKFFFNIDLLKEKCRKILE 385


>gi|327541683|gb|EGF28207.1| prolyl-tRNA synthetase [Rhodopirellula baltica WH47]
          Length = 501

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/448 (14%), Positives = 134/448 (29%), Gaps = 86/448 (19%)

Query: 27  LRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           +R   + ++S   G     P G +  +NV   + +    TG      P       L  E+
Sbjct: 25  IRAADLAENSPVRGCMVIKPWGYQLWENVQRALDDMFKATGHQNAYFPLFIPMSFLEKEA 84

Query: 84  GRYDSYGKEMLRLADRN---------------DKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
              + + KE   +                   ++ +I  PT E ++   +   ++SYR+L
Sbjct: 85  EHVEGFAKECAVVTHHRLEPDPDGGLRPAGKLEEPLIVRPTSETIIGATYAKWVQSYRDL 144

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           P    Q     R                                        +LR    L
Sbjct: 145 PILINQWANVVRW---------------------------------EMRTRMFLRTAEFL 171

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
             +   + A S     +      V  D  E  +                    I+   + 
Sbjct: 172 WQEGHTVHATSEEAVEETEKMVEVYRDFAENWMA----------------MPVIVGSKTP 215

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +E++              +     E      + ++ G   + G  +S      F+   G 
Sbjct: 216 LERFPG-----------AVETLSIEAMMQDRKALQAGTSHFLGQNFSKAQEIKFQSESGD 264

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACE 366
             +    S+G+ + R++ A+I +  D  G++ P  +AP  + +  I          +  +
Sbjct: 265 IEFAWTTSWGV-STRLIGALIMTHSDDDGLVLPPRLAPTHVVIQPIYKDGSRAEVMEYVQ 323

Query: 367 KIYARLSK-----VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   L+          V  DD   + G +       G P+++ VG K ++   V    R
Sbjct: 324 SLRDELAAQTYANAPVRVTIDDRDIRGGEKKWYHVKRGVPIRLEVGPKDIAAGTVFCGIR 383

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
                  +   E++     + +  +  L
Sbjct: 384 NQPKSVGIDRAELVATIGEKLATLQQEL 411


>gi|219110281|ref|XP_002176892.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411427|gb|EEC51355.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 671

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 77/441 (17%), Positives = 144/441 (32%), Gaps = 90/441 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    D V   +  +    GA     P L     L  E+   D + KE   +
Sbjct: 196 GCMVIKPWGMSLWDRVRTELDAKIQAHGAENAYFPLLIPQSFLSKEAEHVDGFAKECAVV 255

Query: 97  ADRN------------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                                 +  +I  PT E ++  +FR  I S+R+LP    Q    
Sbjct: 256 THHRLTTNPDGSGLMVDPEAALEDPLIVRPTSETMIWYMFRKWIVSHRDLPLKINQWANV 315

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
            R E+R R   +R+ EFL ++ ++   T               +     +      +  +
Sbjct: 316 MRWEMRTRP-FLRTSEFLWQEGHTAHAT-----------RDGAIADAQAMLDNYATLCED 363

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
              +                  V   K   +    +E+T   + +  N            
Sbjct: 364 LLAMPV----------------VRGVKSPSERFAGAEDTYTIEALMQNGWA--------- 398

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                                  ++ G   + G  +    + TF+  +G    V   S+G
Sbjct: 399 -----------------------LQSGTSHFLGQSFGKAFNVTFQDENGTQQDVWGTSWG 435

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC-----RDAC-EKIYARL 372
             + R++ A+I +  D  G++ P  VAP ++ ++ I             D    ++ A L
Sbjct: 436 A-STRLIGALIMTHSDDAGLVLPPKVAPAQVIIVPIPPKKDDAETKQAMDIAMNQLTASL 494

Query: 373 SKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG---IRED 428
              G     DD    + G++F   +  G PL++ +G + V ++    K+R       ++ 
Sbjct: 495 KAEGLRFKVDDRDFVRSGAKFFEWERKGVPLRIEIGPRDVRNNVCVFKYRAGENADEKQT 554

Query: 429 MSLEEVINYASHRFSNNRPVL 449
           + L E    A+    + +  L
Sbjct: 555 IPLSEAAASATAGLKSMQQDL 575


>gi|119719664|ref|YP_920159.1| threonyl-tRNA synthetase [Thermofilum pendens Hrk 5]
 gi|166225513|sp|A1RY76|SYT_THEPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119524784|gb|ABL78156.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Thermofilum
           pendens Hrk 5]
          Length = 608

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 113/353 (32%), Gaps = 39/353 (11%)

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG-VMRSR 153
              + ++K +I           + +    SYR+LPF  +++   +R E         R R
Sbjct: 270 YQMEVDEKKLILRYAACHQQFAMVKDWEISYRDLPFGAFEVADSYRLEQPGELLLCFRLR 329

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F M D + F      +     ++         +LG   + +   +              
Sbjct: 330 KFYMPDLHVFCKDLAEAMEVSFRIHSKIYEEIRKLGRDYVSIYNLTRSFL---------- 379

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               E      K  ++         F        ++                 + D L  
Sbjct: 380 ----EQHRDYLKRLVEMEGKPVLLHFVPEGKYYWVIN------------VEYNIIDELGR 423

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIES 331
            + +    I+VG+   FG         T+   +    Y  +    I     R V AV+++
Sbjct: 424 PREIGTFQIDVGNAERFG--------ITYVDENNTRRYPVIIHTAIIGSLERYVFAVLDT 475

Query: 332 SHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +          S+  +   +   +  H        + I  +L + G  V  DD  E +  
Sbjct: 476 AAKKARAGEVPSLPLWLSPVQVRVIPHSSEYLKLADSIADKLEEQGIRVDVDDREESLAK 535

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +   A++   P  V+VG +     K+ ++ R  G + +MSLEE++        
Sbjct: 536 RIRDAEVKWIPYVVVVGKREAESGKLTVRVRGQG-QYEMSLEELVGRLVSELK 587


>gi|327293800|ref|XP_003231596.1| prolyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326466224|gb|EGD91677.1| prolyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 631

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 82/236 (34%), Positives = 127/236 (53%), Gaps = 5/236 (2%)

Query: 2   RRSKYFLPI--LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE 59
           R S +++P   + E+     + S+ L++R G + Q   G++  LPLG +  + +  +I +
Sbjct: 41  RASSFWIPSGGIAESKNG--VDSNDLLIRAGFLRQPYSGVFHLLPLGLRVQEKLERLIDK 98

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
              +  A ++S+ +L S  LW +SGR      E+ R  DR     +  PTHEE +T +  
Sbjct: 99  YMRKLSASKLSLSSLSSQALWKKSGRLHDDDSEVFRFVDRKKTPFLLAPTHEEEITSVVS 158

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             IKSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y+FD T   +  +YN +  
Sbjct: 159 GLIKSYRDLPLRVYQISRKYRDEPRPRHGLLRGREFVMKDLYTFDSTEAEAIKTYNTVKE 218

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           +Y  +F  L L  +   A SG +GG+LSHEF   +  GE  +       ++    E
Sbjct: 219 AYSSLFKELKLPYVVASASSGNMGGNLSHEFHFPSPKGEDTIVSCSKC-EYVFNEE 273



 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 14/192 (7%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-----------KGADGKDHYVQM 314
               +  +    + + IE+ H F+ GT+YS  + A             +    +   +QM
Sbjct: 440 DECPNCGKPALKTDQSIELAHTFHLGTRYSEVLQANVTINPAILAGAGQKGKPEPVPIQM 499

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G +GIG  R+++AV +   D KG+ WP ++APF++ ++      +   +    I  + +K
Sbjct: 500 GCHGIGVSRMISAVSDILADEKGLNWPQAIAPFQVVVVP-GKGLEKEGELVYDIVTQKTK 558

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV-SDSKVEIKHRLTGI-REDMSLE 432
              D   DD  +    +   AD++G+P+ + VG     + +KVE++ R  G  R  +SLE
Sbjct: 559 QPIDTILDDRKKDFAWKLRDADIIGYPIILAVGKNSWGAGNKVEVQCRRLGNLRTKVSLE 618

Query: 433 EVINYASHRFSN 444
           EV  + S   S 
Sbjct: 619 EVPEFVSSLLSK 630


>gi|307719119|ref|YP_003874651.1| glycyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
 gi|306532844|gb|ADN02378.1| glycyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
          Length = 443

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/436 (13%), Positives = 139/436 (31%), Gaps = 28/436 (6%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G + Q S    G+   + + PLG +  +N+      E    R   + +    L    +
Sbjct: 15  RRGFVFQSSEVYGGLSSAWDYGPLGVELKNNIERFWWNEMVRKRRNIVGLDAAILMHPKV 74

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG  +++   ++   D  +    +     ++         K     P  F  +    
Sbjct: 75  WEASGHVENFHDPLV---DCKECKARFRADQIDLSAPCPECGAKDSFTEPRQFNLMFKTH 131

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
              +     V+  R    +  Y        S        ++ +    R  + +      +
Sbjct: 132 LGPVEDESTVVYLRPETAQGIYVNYKNCLQSSRLKVPFGIAQVGKAFRNEIVTKNFIFRT 191

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                     F+  ++  +   +   + M++    +     + +  +       A YA  
Sbjct: 192 CEFEQMEMQFFVHPSEDKKWFDYWKAERMEY--YRKMGVRPEKLRFHQHGPDELAHYAKE 249

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     +      E + V  R           +++S    + F     + +   +     
Sbjct: 250 AVDIQYEFPFGWRELEGVHNRTDYDLSRH---SQFSGKDLSYFDDETRERYIPYIIETSA 306

Query: 320 GAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R V  V+  ++D + +          +   +AP  +++  +   D       + +  
Sbjct: 307 GLTRSVLMVLSDAYDEEELENGEKRTVLRFHPLIAPITVAVFPLMRRD-GLDTYAQNLEE 365

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L     + F+D+ G  IG ++   D +G P  + V  + + D  V +++R +  +  + 
Sbjct: 366 ELRDH-FNTFYDESGA-IGRRYRRQDEVGTPYCITVDYQTLKDDTVTLRYRDSMEQVRIH 423

Query: 431 LEEVINYASHRFSNNR 446
             E+++         R
Sbjct: 424 RNEIVSAVQQAIREYR 439


>gi|326481769|gb|EGE05779.1| prolyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 604

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 70/435 (16%), Positives = 136/435 (31%), Gaps = 82/435 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +    +  +      S P   S D L 
Sbjct: 105 QQVLLKGEMLDYYDVSGCFVLKPHSFFIWEQIQSWFDAKIKQMNVKNCSFPLFVSEDVLK 164

Query: 81  VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +    + A+       PT E VM   +   I+S+R+LP    Q  
Sbjct: 165 KEKDHIEGFAAEVAWVTHAGNSALEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 224

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT E +     ++                   
Sbjct: 225 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTREEAHTEVLQILQ----------------- 267

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAP 255
                      H   V                      E      I    +  E++    
Sbjct: 268 -----------HYAHVY--------------------EELLAVPVIQGQKTDKEKFAGGL 296

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y  T + +              + RGI+ G     G  +S     T +    +    +  
Sbjct: 297 YTTTVEGYIPA-----------TGRGIQGGTSHGLGQNFSKMFGITVEDPSARPDEKKPP 345

Query: 316 SYGIGA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRD 363
            +          R +  ++    D +G++ P  VA  +  ++ +                
Sbjct: 346 LHVWQNSWGLSTRTIGVMVMIHGDNRGLVLPPRVADIQTVIVPVGLGAKTPDEERAAIMA 405

Query: 364 ACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             E I   LS  G  V  D       G +F   +L G PL++  G    + S V    R 
Sbjct: 406 EIEAIATVLSAAGVRVEVDKRDGYTPGWKFNDWELKGIPLRLEFGPGESAGSFVTTSRRD 465

Query: 423 --TGI-REDMSLEEV 434
                 +  ++++++
Sbjct: 466 IAGKEGKSSIAIKDL 480


>gi|308234686|ref|ZP_07665423.1| glycyl-tRNA synthetase [Gardnerella vaginalis ATCC 14018]
          Length = 506

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/442 (15%), Positives = 140/442 (31%), Gaps = 46/442 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +  + +WV SG    +     E L
Sbjct: 33  WDYGPLGVALKDNIKREWWRYMVTTRGDVVGVDTSVILPSQVWVASGHVSVFNDPLIECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R+    +     E+    +  + +K                  E R    ++R+  
Sbjct: 93  NCHKRHRADKLEESYAEKHGDKMPENGLKDIACPDCGTRGNWT----EPRDFNMMLRTHL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDL 206
             ++D  S       +       F + +    +         G            I    
Sbjct: 149 GPVEDENSLHYLRPETAQGIFVDFKNVMTATRQKPPFGIANIGKSFRNEITPGNFIFRTR 208

Query: 207 SHEFIVL-------ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             E + +        D    Q +       +         +++       E+ +     T
Sbjct: 209 EFEQMEMEFFVEPGTDEAWHQYWIDTRVNWYV--DLGVKPENLRMYEHPKEKLSHYSKRT 266

Query: 260 SDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+  +  F      E + ++ R            K+S    + F  A G+ +   +   
Sbjct: 267 VDIEYKFGFQGSDWGELEGIANRTDYDLSAH---AKHSGEDLSYFNQATGEKYVPYVIEP 323

Query: 318 GIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDA 364
             G  R + A +  ++D                      +AP K +++ +    ++    
Sbjct: 324 AAGLTRSLMAFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQ-AV 382

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + + A L +    + +D+ G  IG ++   D +G PL V V    + D  V I+ R T 
Sbjct: 383 AQDLAADLRQHDWVIDYDESGA-IGRRYRREDEIGTPLCVTVDFDTLEDHAVTIRERDTM 441

Query: 425 IREDMSLEEVINYASHRFSNNR 446
            +E +SL++V +Y + R +  R
Sbjct: 442 QQERVSLDKVADYVASRINEKR 463


>gi|170584765|ref|XP_001897164.1| bifunctional aminoacyl-tRNA synthetase [Brugia malayi]
 gi|158595450|gb|EDP34004.1| bifunctional aminoacyl-tRNA synthetase, putative [Brugia malayi]
          Length = 1572

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 66/433 (15%), Positives = 131/433 (30%), Gaps = 68/433 (15%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWV 81
            +++++  MI  +   G Y   P      + V      E  + G      P   S + L  
Sbjct: 1106 QIIIKADMIEYYDVSGCYILRPWSFAIWEIVKKWFDTEIKKCGVRNCYFPIFVSQNGLQR 1165

Query: 82   ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            E    D +  E+                                                
Sbjct: 1166 EKEHIDDFAPEV------------------------------------------------ 1177

Query: 142  ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-SG 200
                 +        L +       +      SY K   SY  +  RL      +R E   
Sbjct: 1178 ----AWVTRAGNSELSEPIAIRPTSETVMYPSYAKWIQSYRDLPIRLNQWCNVVRWEFKH 1233

Query: 201  PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
            P     + EF+          F +K   +  + +    +  + +    +       +   
Sbjct: 1234 PTPFLRTREFLWQ---EGHTAFQTKQEAEEEVFAILDLYAKVYTDLFAIPVIKGRKSEKE 1290

Query: 261  DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGI 319
                 +   ++     V+ RGI+     + G  +S     +F+    GK  +    S+G+
Sbjct: 1291 KFAGGEFTTTVEAYVPVNGRGIQGATSHHLGQNFSKMFDISFEDPETGKKTFAWQNSWGM 1350

Query: 320  GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------L 372
               R + A+I    D  G++ P  VAP ++ +I +    Q+     ++I  +       L
Sbjct: 1351 -TTRTIGAMIMIHSDNDGLVLPPRVAPIQVIIIPVGIASQMHNKIKQEIITKIEEIIKTL 1409

Query: 373  SKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
                  V  D       G +F   +L G P+++ +G K +  S+V    R    +  + +
Sbjct: 1410 ENSKIRVDIDLRDNYSPGWKFNHWELKGVPIRLELGPKDIEKSQVTCVTRYNKHKSVIPI 1469

Query: 432  EEVINYASHRFSN 444
            + ++   S     
Sbjct: 1470 DNLLAKCSELLDE 1482


>gi|300857280|ref|YP_003782264.1| glycyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
 gi|300437395|gb|ADK17162.1| glycyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
          Length = 463

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 66/438 (15%), Positives = 143/438 (32%), Gaps = 43/438 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P+G +  +NV  +  ++        + +    L + ++WV SG   ++   ++   
Sbjct: 34  WDYGPIGVELKNNVKKVWWQKFVHESEHNVGIDCAILMNNEVWVASGHVGNFSDPLMDCK 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           +   +        E +            + N     Y            +      R+F 
Sbjct: 94  ECKARFRADKLVEEHMTAQGVEKASADGWSNEKLEKYIDDNNIVCPSCGKKNFTDIRQFN 153

Query: 157 MKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           +       +T +     Y        +FV++  +      K     A+ G    +     
Sbjct: 154 LMFKTFQGVTEDSKSEIYLRPETAQGIFVNFKNVQRTSRKKIPFGIAQIGKSFRNEITPG 213

Query: 209 --------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                         EF     T        K +    + S     ++I   +   E+ + 
Sbjct: 214 NFTFRTREFEQMELEFFCKPGTDLEWHDYWKKYCWNFLLSLGIKEENIRFRDHDKEELSH 273

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              ATSD+     F    E   V+ R            ++S            + +    
Sbjct: 274 YSNATSDIEYLFPF-GWGELWGVADRTDYDLKQHQ---EHSGKDMTYLDTVTKEKYIPYC 329

Query: 315 GSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDAC 365
               +GA R V A +  ++D +          + +  ++APFK +++ +        +  
Sbjct: 330 IEPSVGADRAVLAFLVDAYDEEELEGGDVRTVLHFHPAIAPFKAAILPLSKK---LSEKA 386

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++Y  L K   +V +DD G  IG ++   D +G P  + V    + D+ V ++ R T  
Sbjct: 387 LEVYNILRK-DFNVEYDDAG-SIGKRYRREDEIGTPYCITVDFDTMDDNTVTVRDRDTME 444

Query: 426 REDMSLEEVINYASHRFS 443
           +  + +EE+  +   +  
Sbjct: 445 QFRIKIEELSAFIQEKVQ 462


>gi|312137209|ref|YP_004004546.1| ser-tRNA(thr) hydrolase ;threonyl-tRNA synthetase [Methanothermus
           fervidus DSM 2088]
 gi|311224928|gb|ADP77784.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Methanothermus
           fervidus DSM 2088]
          Length = 608

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 74/454 (16%), Positives = 149/454 (32%), Gaps = 60/454 (13%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSK----GIYSWLPLGQKALDNVNAIIREEQNRT 64
           P  +E P       H  ++R   I  +      G   W P G+   D ++  +     + 
Sbjct: 188 PSEKEPP-------HIKLMREKKIADYEPSADIGHLRWYPKGKLIRDLLSDYVYSLVTKY 240

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           GA+ +  P +   DL  ++ R  +      +    N K ++           I       
Sbjct: 241 GAMVVETPIMY--DLSDKAIRVHAEKFGERQYRIHNKKELMLRYACCFGAFKILADSFLR 298

Query: 125 YRNLPFTFYQIQLK-FRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +++LP   Y++    FR E R    G+ R R F M D ++     + +   + K     L
Sbjct: 299 WKDLPVKIYELSTYSFRLEQRGEVVGLKRLRSFTMPDLHTVCRDMQQALEEFEKQVEMCL 358

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           +    L       +     I       +       E + +          P         
Sbjct: 359 KAAEDL-------KLNHKAIFRFTKDFY------EENKEWIKSLSRKINEPILIELLPKR 405

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                    + A              DSL      S   I+V        +     + ++
Sbjct: 406 KHYWVAKIDFAA-------------VDSLGRPIENSTVQIDV--------ESGKRFNISY 444

Query: 303 KGADGKD-HYVQMGSYGIGAMRVVAAVI-----ESSHDGKGIIWPDSVAPFKISLINIKA 356
              DGK+   V +     G++  V   +     +  ++ K  + P  ++P  + +I +  
Sbjct: 445 LDEDGKNKFPVILHCSPTGSIERVICSLLEENAKKINNNKLPMLPVWLSPIHVRVIPV-- 502

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +   D    I  +++  G     DD  E +  +   A     P   ++G K +S+ ++
Sbjct: 503 -SEKHVDYAIDIVKKINSYGIRADIDDTNETVSKKVRNAGKEWIPYVAVIGDKEISEDEL 561

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNN--RPV 448
            +  R    + ++ LEE+I    ++  N   +P+
Sbjct: 562 TVTIRENDEKRELKLEELIEIVKNKLKNKPFKPL 595


>gi|289758965|ref|ZP_06518343.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis T85]
 gi|289714529|gb|EFD78541.1| prolyl-tRNA synthetase proS [Mycobacterium tuberculosis T85]
          Length = 513

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 93/174 (53%), Gaps = 4/174 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+     V ARGIE+GHIF  G+KY+   +A   G DGK   + MG
Sbjct: 326 GTIEAAEVREGDPSPDGAGPLVMARGIEIGHIFQLGSKYTDAFTADVLGEDGKPVRLTMG 385

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  R+VA V E  HD  G+ WP +VAPF +  + I   D   R     + A L ++
Sbjct: 386 SYGIGVSRLVAVVAEQHHDELGLRWPSTVAPFDVH-LVIANKDAQARAGATALAADLDRL 444

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           G +V  DD     G +F  A+LLG P  V+VG +  +D  VE++ R +G   ++
Sbjct: 445 GVEVLLDDRQASPGVKFKDAELLGMPWIVVVG-RGWADGVVELRDRFSGQTREL 497


>gi|218249438|ref|YP_002374917.1| prolyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|226321716|ref|ZP_03797242.1| prolyl-tRNA synthetase [Borrelia burgdorferi Bol26]
 gi|259511576|sp|B7J1X2|SYP_BORBZ RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|218164626|gb|ACK74687.1| prolyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|226232905|gb|EEH31658.1| prolyl-tRNA synthetase [Borrelia burgdorferi Bol26]
          Length = 488

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 135/414 (32%), Gaps = 65/414 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      + +I+ ++   TG      P L     L  E    D +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIQSILDKKFKETGHENAYFPMLIPYSFLEREKDHIDGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   +++                                                    
Sbjct: 93  KDAGGESLAEPLVLRP-------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 109 --------TSETIIWNMYSKWIKSYRDLPLKINQWANVVRWEKRTRPFLRTTEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ ++  +   +  +   I     +  +    +            S+ E   
Sbjct: 159 GHTAHATEEEALEETLLILDV-YKRFIEDYLAIPVFCGKKSEKEKFAGAVSTYSI-EALM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+  DGK  +V   S+G+ + R++ A+I    D K
Sbjct: 217 QDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEK 275

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
           G++ P  +AP +I +I I   +        D C+ +   L K G  V  D D+    G +
Sbjct: 276 GLVLPPRIAPIEIIVIPIFKKEDEINKKILDYCDCVVDALKKAGFRVEIDKDVRSSPGFR 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFS 443
           F+ A+  G P+++ VG   V  + V I  R    +    +SL+ +++       
Sbjct: 336 FSSAEFKGIPIRLEVGINDVLLNSVTISRRDKDRKFKYQISLDSLVSKVKVELD 389


>gi|159904883|ref|YP_001548545.1| threonyl-tRNA synthetase [Methanococcus maripaludis C6]
 gi|238686928|sp|A9A6L7|SYT_METM6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|159886376|gb|ABX01313.1| threonyl-tRNA synthetase [Methanococcus maripaludis C6]
          Length = 622

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 59/426 (13%), Positives = 129/426 (30%), Gaps = 48/426 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + W P G+   D ++  +       G + +  P +            D +G+   R 
Sbjct: 218 AGHFRWYPKGKLIRDLLSDYVYNLVVERGGMPVETPVMYDLQNNAIREHADKFGERQYRF 277

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSRE 154
               +K ++           + +      +++P   Y++    FR E R    G+ R R 
Sbjct: 278 KQ-GNKDLMLRFAACFGQFMMKKDMYLLPKHMPLKLYELSTYSFRYEQRGELVGLKRLRA 336

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++  +  + +  ++       L    + G       A       D   E     
Sbjct: 337 FTMPDMHTVCIDMKQAMEAFEDQLWMGL----KTGDDFKTPYAIIFRFTEDFFEE----- 387

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                          F +  E        ++  I+      +    D+    + DS    
Sbjct: 388 ----------NKEWFFGMAKEYKQKYGKDAILEILPGRKHYWVGKVDM---AVVDSFGRP 434

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                  I+V        + +          D K H + +     G++  V   +  +  
Sbjct: 435 IENPTVQIDV--------ESAERFGIVVHDGDKKVHPIILHCSPTGSVERVLCGLLENAY 486

Query: 335 GKGIIWPD-----SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              +          + P +  +I +             +  +L   G    +DD  + +G
Sbjct: 487 LNTLENRPPALPTWLTPVQARVIPVGDKHS---AFALDVATKLRASGIRADFDDREDSMG 543

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-----REDMSLEEVINYASHRFSN 444
            +   A        V++G   +   K+ +  R         +E++++EE+I   +    +
Sbjct: 544 KKVRNAGTDWVNYVVVIGDSEMESGKLTVTVREESELKKAKKEELTVEELIEKITSDVKD 603

Query: 445 --NRPV 448
              RP+
Sbjct: 604 APKRPL 609


>gi|311114395|ref|YP_003985616.1| glycine--tRNA ligase [Gardnerella vaginalis ATCC 14019]
 gi|310945889|gb|ADP38593.1| glycine--tRNA ligase [Gardnerella vaginalis ATCC 14019]
          Length = 506

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 67/442 (15%), Positives = 140/442 (31%), Gaps = 46/442 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +  + +WV SG    +     E L
Sbjct: 33  WDYGPLGVALKDNIKREWWRYMVTTRGDVVGVDTSVILPSQVWVASGHVSVFNDPLIECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R+    +     E+    +  + +K                  E R    ++R+  
Sbjct: 93  NCHKRHRADKLEESYAEKHGDKMPENGLKDIACPDCGTRGNWT----EPRDFNMMLRTHL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDL 206
             ++D  S       +       F + +    +         G            I    
Sbjct: 149 GPVEDENSLHYLRPETAQGIFVDFKNVMTATRQKPPFGIANIGKSFRNEITPGNFIFRTR 208

Query: 207 SHEFIVL-------ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             E + +        D    Q +       +         +++       E+ +     T
Sbjct: 209 EFEQMEMEFFVEPGTDEAWHQYWIDTRVNWYV--DLGVKPENLRMYEHPKEKLSHYSKRT 266

Query: 260 SDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            D+  +  F      E + ++ R            K+S    + F  A G+ +   +   
Sbjct: 267 VDIEYKFGFQGSDWGELEGIANRTDYDLSAH---AKHSGEDLSYFNQATGEKYVPYVIEP 323

Query: 318 GIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDA 364
             G  R + A +  ++D                      +AP K +++ +    ++    
Sbjct: 324 AAGLTRSLMAFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQ-AV 382

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + + + L +    + +D+ G  IG ++   D +G PL V V    + D  V I+ R T 
Sbjct: 383 AQDLASDLRQHDWVIDYDESGA-IGRRYRREDEIGTPLCVTVDFDTLEDHAVTIRERDTM 441

Query: 425 IREDMSLEEVINYASHRFSNNR 446
            +E +SL++V +Y + R +  R
Sbjct: 442 QQERVSLDKVADYVASRINEKR 463


>gi|269986191|gb|EEZ92503.1| prolyl-tRNA synthetase [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 477

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/410 (14%), Positives = 124/410 (30%), Gaps = 60/410 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  +     +  +    G      P L    +   E    + +  E+  +
Sbjct: 34  GFAVYRPYGYEMWERSVEYLDGKFKSIGVKNAYFPLLIPESVLSKEKEHIEGFNPEVAWV 93

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               D  +                                                    
Sbjct: 94  TMGGDTKLDERLA----------------------------------------------- 106

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +      SY+K   SY  +   +   +  +R E+      L    ++  + 
Sbjct: 107 -----IRPTSETIMYDSYSKWIKSYRDLPLLINQWNTMVRWETKETRLFLRGREVLWQEG 161

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
               VF +++  D         + D +     V       + +          ++ E   
Sbjct: 162 --HCVFKTEEEADKNARDILNFYKDFLENMLAVPVIAGKKSQSEKFAGAVTTYTV-EAVL 218

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            +    +     Y G  ++ P    F     +  Y    S+GI +MR +  ++    D K
Sbjct: 219 SNNFMSQAATSHYLGQNFAKPFDIKFLDEKNELQYPFQTSWGI-SMRSIGIMLLVHGDDK 277

Query: 337 GIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAV 394
           G++    VAP++  +I I K       + C +I +RL ++G  V  D       G +   
Sbjct: 278 GLVLSPHVAPYQCVIIPIIKEEKDKVLEYCGQIESRLKEIGIRVLLDSREDYSPGWKLNE 337

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            DL G PL++ +G + +    + +K R+  ++  +S  E I     +   
Sbjct: 338 YDLKGVPLKIQIGKRELESRNISLKTRINNVQSIVSFNE-IEQVKEKLEE 386


>gi|106364390|dbj|BAE95216.1| predicted threonyl-tRNA synthetase [unclutured Candidatus
           Nitrosocaldus sp.]
          Length = 685

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 77/454 (16%), Positives = 144/454 (31%), Gaps = 36/454 (7%)

Query: 24  KLMLRTGM-IHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           +LM R  +  H+ +   G   + P G+     +   +  +    GA+E+  P +   +  
Sbjct: 220 RLMKRLAIADHEPASDAGNLRFYPKGRLIKSLIEQYVTRKVIEYGAVEVETPIMYDVE-- 277

Query: 81  VESGRYDSYGKEM---LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ-IQ 136
             S    SY         + +   K              + +    SY++LP   Y+  +
Sbjct: 278 HPS--LASYFNRFPARQYMIESEGKEFFLRFAACFGQFLMAKDFTISYKHLPLKIYELTR 335

Query: 137 LKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E      G+ R R F M D ++     E +K    K      ++   LG+  +  
Sbjct: 336 YSFRREKSGELVGLRRLRAFTMPDCHALCRDIEQAKQEMLKRLELSKQVIEGLGISLMDD 395

Query: 196 RAESGPIGGDLSHEFI-------------VLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
              +  +  D  +E               VL +    + F      +F           +
Sbjct: 396 VEVAIRVTSDFYNENRGFIAELVRRIGKPVLLEEWSERFFYFVLKWEFNFVDNLAKASAL 455

Query: 243 ISLNSIVEQWT--APYAATSD--VHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSL 296
            +    VE       Y    D    N  +  + P    +RV    +E  +      K + 
Sbjct: 456 STDQIDVENGARYGIYFVDEDGSRKNPIILHNSPSGAVERVMYALLEKAYRMQKEGK-TP 514

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD---GKGIIWPDSVAPFKISLIN 353
            +         +   V       G+        +   D                  S  +
Sbjct: 515 MLPLWLSPTQVRLIPVSTRGAVKGSSSSSNNNNKDDGDGGRSGESSMGVEANSNSSSNSS 574

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
                    D C  I  RL +    V  DD  E +G +   A++   P  V+VG K ++ 
Sbjct: 575 NNVSSITYLDYCNSIMHRLERSSIRVDIDDRDESVGKRIREAEMEWIPYIVVVGEKEIAS 634

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++ ++ R +G   +MS+EE+ +        ++P
Sbjct: 635 DRLSVRDRASGKVREMSVEELEHEIVSAV-KDKP 667


>gi|167393549|ref|XP_001740621.1| prolyl-tRNA synthetase [Entamoeba dispar SAW760]
 gi|165895194|gb|EDR22941.1| prolyl-tRNA synthetase, putative [Entamoeba dispar SAW760]
          Length = 536

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 71/431 (16%), Positives = 133/431 (30%), Gaps = 75/431 (17%)

Query: 27  LRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESG 84
           +++G+I  +   G Y   P      +N+   +     + G      P   S A L  E  
Sbjct: 56  VQSGLIEYYDISGCYILKPSAYGIWENIQHFMDTRIKKMGVENAYFPCFVSQATLKKEED 115

Query: 85  RYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             + +  E+  +       +       PT E ++   F++ I  +R+LP    Q     R
Sbjct: 116 ELNGFTPEVAWVTKSGQSDLQEPIALRPTSETIIYPAFKNWISGHRDLPIKVNQWCNVVR 175

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
                        EF     +         +                             
Sbjct: 176 ------------WEFSHPYPFIRTREFLWQEGHT-------------------------- 197

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQW-TAPYAA 258
                        A   E +  C +    +  +  +      I    S  E +  A Y+ 
Sbjct: 198 -----------AFATQIEAEKECHQILELYASVYEDLLAVPVIRGKKSKGETFPGAYYSL 246

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           T +                  R ++     + G  +S      F+  D K   V   S+G
Sbjct: 247 TVECIIPTNG-----------RSVQAATSHHLGQTFSKLFQIEFEDEDNKKQLVWQNSWG 295

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSKV 375
           + + R +   I +  D KGII P   A  ++ +I +      +       E++   L   
Sbjct: 296 L-STRSIGVTIMTHGDNKGIIVPPRAAQKQVVIITLHHKGSPNDEMDAKAEELTQILLDN 354

Query: 376 GCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G   F D   E  + G +F+  ++ G P+++ +G +     KV I  R  G + + + E+
Sbjct: 355 GIRAFAD-TNEMHKPGWKFSEYEMRGIPIRIELGPRDYEGKKVVIVRRDNGTKSESTWED 413

Query: 434 VINYASHRFSN 444
           +I         
Sbjct: 414 LIQNIKKTIDE 424


>gi|91773300|ref|YP_565992.1| threonyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
 gi|121684342|sp|Q12WD4|SYT_METBU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91712315|gb|ABE52242.1| Threonyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
          Length = 635

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 64/416 (15%), Positives = 132/416 (31%), Gaps = 45/416 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   + P G+     +   + EE ++ GA+E+  P +   +        D +       
Sbjct: 234 SGNMRYYPKGRLMKSLIENFVLEESSKIGAMEVETPLMYDMNHPTLKKYLDRFPAR-QYS 292

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSRE 154
            + + + M            +      SY+NLP    ++    FR E R    G+ R R 
Sbjct: 293 IESDKRHMFLRFAACFGQFLMNHDMTISYKNLPLKMIEMTRYSFRKEQRGELVGLRRLRA 352

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++     E +   + + +   + I  ++G+           +    + EF    
Sbjct: 353 FTMPDMHTLCPDMEAAISQFGEQYSMCIDILRKIGIDV-----SDFEVAIRFTREF--YD 405

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D  E                  T+    +    +VE W   +            D++ + 
Sbjct: 406 DNREFI----------------TELAKKVDKPVLVEMWDTRFFYFVLKFEFNFVDAIAKA 449

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG--AMRVVAAVIESS 332
             +S   I+V        + +      +  A+GK +   +          R + A++E +
Sbjct: 450 SALSTVQIDV--------ENAERYDINYVDANGKINRPTILHCSPSGAIERCIYALLEKA 501

Query: 333 HDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                     ++  +       +    +   D  +++   L    C    DD  E +G +
Sbjct: 502 AMDAEEGKVPNLPVWLSPTQVRVIPIAERHMDFAQEVADSLL---CRADIDDREETVGKK 558

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-----REDMSLEEVINYASHRF 442
              A     P   ++G   V   KV +  R         + +M+ EE+     +  
Sbjct: 559 IRDAGREWIPYVAVIGDSEVESGKVTVTIRAESEPKKPMKVEMTAEELSERVFNEI 614


>gi|167464457|ref|ZP_02329546.1| prolyl-tRNA synthetase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 424

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 119/336 (35%), Gaps = 15/336 (4%)

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           T    ++   +    F   + +          +      E L +       +     H Y
Sbjct: 8   TGHRNAYFPLFIPESFFQKEKEHVEGFNPELPWVTEAGGEKLEERLAVRPTSETMVGHMY 67

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
            +   SY  +   +   +  +R E   +    + EF+                 D     
Sbjct: 68  AEWINSYRDLPLLINQWANVVRWEKRTLPFLRTSEFLWQ--------EGHTAHEDEADAR 119

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----PENKRVSARGIEVGHIFYF 290
           + T     I    + +    P        +EK   ++     E      + ++ G   Y 
Sbjct: 120 KETMQMLEIYRTFVEDYLAIPVITGQKTPSEKFAGAIDTYSIEAMMKDGKAVQAGTSHYL 179

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           GT ++      F   + +  +V   S+G+ + R++ A+I +  D +G++ P  VAP ++ 
Sbjct: 180 GTNFAEAFDIKFLNRENQHEFVHTTSWGV-STRLIGAMIMAHGDDRGLVMPPKVAPTQVI 238

Query: 351 LINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           +I I              ++   + K G  V  D   +  G +F   ++ G P++V +G 
Sbjct: 239 MIPIGPAKTRDQVLAKTYELQTEIKKAGFRVRVDAREQSPGWKFNEYEMRGVPVRVELGP 298

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + + + +V +  R+TG ++ ++ + ++   +     
Sbjct: 299 RDMENGQVILVSRVTGEKKVVAQDNLVEEITRLLDE 334



 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 6/137 (4%)

Query: 57  IREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLA----DRNDKAMIYGPTHE 111
           + +    TG      P       +  E    + +  E+  +     ++ ++ +   PT E
Sbjct: 1   MDDMFKETGHRNAYFPLFIPESFFQKEKEHVEGFNPELPWVTEAGGEKLEERLAVRPTSE 60

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
            ++  ++   I SYR+LP    Q     R E R     +R+ EFL ++ ++       ++
Sbjct: 61  TMVGHMYAEWINSYRDLPLLINQWANVVRWEKR-TLPFLRTSEFLWQEGHTAHEDEADAR 119

Query: 172 HSYNKMFVSYLRIFHRL 188
               +M   Y       
Sbjct: 120 KETMQMLEIYRTFVEDY 136


>gi|284030420|ref|YP_003380351.1| glycyl-tRNA synthetase [Kribbella flavida DSM 17836]
 gi|283809713|gb|ADB31552.1| glycyl-tRNA synthetase [Kribbella flavida DSM 17836]
          Length = 461

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 61/434 (14%), Positives = 133/434 (30%), Gaps = 39/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV          +R   + +    +    +W  SG    +   +    
Sbjct: 33  WDYGPLGVELKNNVRNQWWRAMVTSRDDVVGLDSSVILPTKVWEASGHLSEFVDPLTECQ 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +        E+      ++  +                  E R   G++++    +
Sbjct: 93  SCHKR-FRDDHLREDYARRKNKNADEVQLAEIACPNCGNKATFTEPRMFNGLLKTYLGPV 151

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESGPIG 203
           +           +       F + +                  R  +        +    
Sbjct: 152 ESEEGLHYLRPETAQGIFVNFANVMGTARKKPPFGIAQVGKSFRNEITPGNFIFRTREFE 211

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                 F+V     +   +  K   D+ +     + D++       E+ +     T D+ 
Sbjct: 212 QMEMEFFVVPGSDEDWHEYWLKARWDWYV-GLGLNPDNMRFYEHPQEKLSHYSKRTVDIE 270

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F      +     GI     F   T  K+S    + F    G+     +     G 
Sbjct: 271 YKFNF---GGKEFDELEGIANRTDFDLSTHSKHSGADLSYFDQEKGERWTPYVIEPAAGL 327

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R V A +  ++                   +   +AP K +++ + + +       + +
Sbjct: 328 TRNVLAFLLDAYTEDEAPNAKGGVDKRTVLRFDPRLAPVKAAVLPL-SRNADLSPKAKDL 386

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A L +   +V +DD G  IG ++   D +G P  + V    + D  V I+ R +  +E 
Sbjct: 387 AAELRQSW-NVDFDDAGA-IGRRYRRQDEIGTPYCITVDFDTLEDHAVTIRERDSMKQER 444

Query: 429 MSLEEVINYASHRF 442
           ++L EV  Y + R 
Sbjct: 445 VALTEVTGYLAQRL 458


>gi|302505226|ref|XP_003014834.1| hypothetical protein ARB_07395 [Arthroderma benhamiae CBS 112371]
 gi|291178140|gb|EFE33931.1| hypothetical protein ARB_07395 [Arthroderma benhamiae CBS 112371]
          Length = 624

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 134/445 (30%), Gaps = 82/445 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +    +  +      S P   S D L 
Sbjct: 104 QQVLLKGEMLDYYDVSGCFVLKPHSFFIWEQIQSWFDAKIKQMNVKNCSFPLFVSEDVLK 163

Query: 81  VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +    +  +       PT E VM   +   I+S+R+LP    Q  
Sbjct: 164 KEKDHIEGFAAEVAWVTHAGNSPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 223

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT E +     ++                   
Sbjct: 224 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTREEAHTEVLQILQ----------------- 266

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAP 255
                      H   V                      E      I    +  E++    
Sbjct: 267 -----------HYAHVY--------------------EELLAVPVIQGQKTDKEKFAGGL 295

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y  T + +              + RGI+ G     G  +S     T +    +    +  
Sbjct: 296 YTTTVEGYIPA-----------TGRGIQGGTSHGLGQNFSKMFGITVEDPSARPDEKKPP 344

Query: 316 SYGIGA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRD 363
            +          R +  ++    D +G++ P  VA  +  ++ +                
Sbjct: 345 LHVWQNSWGLSTRTIGVMVMIHGDNRGLVLPPRVADIQTVIVPVGLGAKTPDEERAAIMA 404

Query: 364 ACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             E I   LS  G  V  D       G +F   +L G PL++  G    + S V    R 
Sbjct: 405 EIEAIATVLSAAGVRVEVDRRDGYTPGWKFNDWELKGIPLRLEFGPGESAGSFVTTSRRD 464

Query: 423 --TGI-REDMSLEEVINYASHRFSN 444
                 +  + ++++          
Sbjct: 465 IAGKEGKSSIQIKDLGTAVPALLET 489


>gi|111225872|ref|YP_716666.1| prolyl-tRNA synthetase [Frankia alni ACN14a]
 gi|123337919|sp|Q0RBM4|SYP_FRAAA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|111153404|emb|CAJ65160.1| Prolyl-tRNA synthetase (Proline--tRNA ligase) [Frankia alni ACN14a]
          Length = 468

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 59/385 (15%), Positives = 115/385 (29%), Gaps = 59/385 (15%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + + A +       GA+    P       L  E+   + +  E+  +     K
Sbjct: 38  PYGYAIWERMQADVDARIKAAGAVNAYFPLFIPESYLRREAEHVEGFSPELAVVTIGGGK 97

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 98  ELEEPVVVRP-------------------------------------------------- 107

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +         K   SY  +   L   +  +R E  P     S EF+     G T   
Sbjct: 108 --TSETIIGEYLAKWTQSYRDLPLLLNQWANVVRWELRPRLFLRSSEFL--WQEGHTAHV 163

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              +   +        + D ++    +  +                 +  E      + +
Sbjct: 164 DEAEAAAYARRIALEVYRDFLTDVLAIPVFIGTKTRKERFAGATNTMTC-EGMMGDGKAL 222

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++      G  ++      F GADG  H     S+G  + R+V  +I +  D  G+  P 
Sbjct: 223 QMATSHELGQNFARAFDIDFLGADGAKHLAWTTSWGS-STRMVGGLIMAHGDDNGLRIPP 281

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFP 401
            +AP ++ ++ ++  D+       +I A L+  G  V  D   G   G +   A++ G P
Sbjct: 282 RLAPTQVVVLPVRD-DETVVAKAREIAAALTDAGLRVQVDARSGLSFGRRVTDAEIKGIP 340

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++V VG + ++   V +  R T ++
Sbjct: 341 VRVEVGPRDLAAGNVTLVRRDTSVK 365


>gi|328861801|gb|EGG10903.1| hypothetical protein MELLADRAFT_74104 [Melampsora larici-populina
           98AG31]
          Length = 488

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 68/412 (16%), Positives = 132/412 (32%), Gaps = 82/412 (19%)

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLA----DRNDKAMIYGPT 109
               E     G      P   S+ +   E    + +  E+  +        ++ +   PT
Sbjct: 23  NWFDERIKALGVENAYFPMFVSSRVLEREKDHIEGFAPEVAWVTRAGKSELEEHIAIRPT 82

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
            E VM   +   I+SYR+LP    Q     R E +     +R+REFL ++ ++  LT   
Sbjct: 83  SETVMYPYYAKWIQSYRDLPLKINQWNSVVRWEFKNPQPFIRTREFLWQEGHTAHLTKPE 142

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
           +     ++   Y  ++                                            
Sbjct: 143 ADTEVRQILDLYKGVYE------------------------------------------- 159

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                E         + S  E++      T+    E    +     +             
Sbjct: 160 -----ELLAVPVTPGIKSEKEKFAGGLYTTT---VEGFIPTSGRGIQ-------GATSHC 204

Query: 290 FGTKYSLPMSATFKGADGKDH----------YVQMGSYGIGAMRVVAAVIESSHDGKGII 339
            G  +S   + + +                 +V   S+G+ + R +  ++    D KG++
Sbjct: 205 LGQNFSKMFNISVEDPAKPVDSKLGVQAEKLFVWQNSWGL-STRTIGVMVMVHGDDKGLV 263

Query: 340 WPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQ 391
            P  VA  ++ +I +           +   D  E++ ARL K G     D   G   G +
Sbjct: 264 LPPRVAQLQVIVIPVGIVASTTQEGRKELYDKTEELAARLRKAGVRAKSDLREGYTPGWK 323

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           F   ++ G PL++ +G K +++    +  R TGI+   SL+++         
Sbjct: 324 FNSWEMKGIPLRLELGPKDLANQTTLVVRRDTGIKTPFSLDKLDEEIPELLE 375


>gi|85374048|ref|YP_458110.1| prolyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
 gi|123099532|sp|Q2NAH8|SYP_ERYLH RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|84787131|gb|ABC63313.1| putative prolyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
          Length = 514

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 72/411 (17%), Positives = 136/411 (33%), Gaps = 87/411 (21%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    + +  ++ +    TG   +  P       +  E+   + + KEM  +
Sbjct: 37  GCMVIKPWGYGIWERIQRLLDDRIKATGHENVYFPIFIPLSNFEREAEHVEGFAKEMAVV 96

Query: 97  ADRN-----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                                ++ ++  PT E +  D     I+S+R+LP    Q     
Sbjct: 97  THHRLIGDGEGGLIPDPEAKLEEPLVVRPTSETIFGDAMARWIQSWRDLPLLTNQWANVV 156

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E+R R  + R+ EFL ++ ++   T E +K     M   Y                  
Sbjct: 157 RWEMRTRMFL-RTSEFLWQEGHTAHATAEEAKEHTLTMLEVYRAHAE------------- 202

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                        D  +P    +  +       VE W       
Sbjct: 203 ----------------------------EDLALPVIAGEKPENERFPGAVETW------- 227

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                        E      + ++ G   Y GT +S   +  F+  +G + Y    S+G+
Sbjct: 228 -----------SIEAMMQDGKALQAGTSHYLGTNFSEAANIKFQDREGGEKYCHTTSWGV 276

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARL---S 373
            + R++  VI +  D  G+  P  +AP+++ ++ +   K  D      CE +  +L   S
Sbjct: 277 -STRMIGGVIMTHGDDDGLKVPPRIAPYQVVILPMLRDKPEDDALLAYCEDLRGKLITES 335

Query: 374 KVG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
            +G    V  D    +  ++       G P+ + VG + + +  V +  R 
Sbjct: 336 AMGEPVRVLLDKKPGKAAAKRWNWVRKGAPIVIEVGGRDMENGVVSLLRRD 386


>gi|147920005|ref|YP_686240.1| threonyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
 gi|121683020|sp|Q0W3X9|SYT_UNCMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110621636|emb|CAJ36914.1| threonyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
          Length = 641

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 63/415 (15%), Positives = 121/415 (29%), Gaps = 43/415 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   W P G+   + +   +  E  + GA+E+  P +   +        D +      +
Sbjct: 235 PGNMRWYPKGRAMKNMLEQFVLSEAAKKGAMEVETPIMYDMEHPTLKKYLDRFPARQYTV 294

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ-IQLKFRDELRPR-FGVMRSRE 154
                  +            +      SYRNLP    +  +  FR E R    G+ R R 
Sbjct: 295 IADKKN-LFLRFAACFGQFLMNHDMTISYRNLPLKMIELTRYSFRKEQRGELVGLRRLRA 353

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++     +G+   +   +                   ++  I     +E     
Sbjct: 354 FTMPDMHTLCTDMDGAIKEFGDQYEM------------CINTLDTIGIDIKTDYE----- 396

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                 +  +KDF +   P              IVE W   +            DSL + 
Sbjct: 397 ----VAIRFTKDFYNNNTPF-IQSLVKRAGKPVIVEMWEERFFYFVLKFEFNYIDSLNKA 451

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG--AMRVVAAVIESS 332
             +S   I+V        + +      +   +G      +          R +  ++E  
Sbjct: 452 SALSTVQIDV--------ENAERYDINYVDQNGNRQRPIILHCSPSGAIERCIYGLLEKE 503

Query: 333 HDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                      +  +       I    +      E +  R+      V  DD  E +G +
Sbjct: 504 AMESEKGAVPMLPVWLSPTQVRIVTISEKHVPFAEALADRMC--NVRVDIDDREETVGKK 561

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR-----EDMSLEEVINYASHR 441
              A     P  V +G   ++  K+ +  R    +      +M++EE++      
Sbjct: 562 IRDAGKEWIPYVVTIGDAEMNGDKIPVVVRAESQQNKPAKVEMTVEELVERIHKE 616


>gi|314928065|gb|EFS91896.1| glycyl-tRNA synthetase [Propionibacterium acnes HL044PA1]
          Length = 504

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 67/434 (15%), Positives = 133/434 (30%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P G +  +N+           R   + +    +   ++WV SG    +   +    
Sbjct: 75  WDYGPFGVELKENIKRQWWRCMVTYRDDVVGLDSSVILPREVWVASGHVGVFNDPLTECL 134

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + + M      E            S             K +  E R    ++++    
Sbjct: 135 SCHKR-MRADHLQEGYAAKHGMDDPDSVPLEEINCPNCGNKGQWTEPRDFNMMLKTYLGP 193

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG---- 204
           ++D          +       F + L    +         G            I      
Sbjct: 194 VEDEAGLHYLRPETAQGIFVNFQNVLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREF 253

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V   T E       D           + D++       E+ +     T D+ 
Sbjct: 254 EQMEMEFFVEPGTDEEWHQYWIDERTNWYTDLGINADNLRHYEHPKEKLSHYSKRTVDIE 313

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F      +     GI     F  GT  K+S    + F  A  K +   +     G 
Sbjct: 314 YKFGFAGSDWGELE---GIANRTDFDLGTHTKHSGKDLSYFDQAQNKRYLPYVIEPAAGL 370

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       +AP K +++ +  +          +
Sbjct: 371 TRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRLAPVKAAVLPLSRNSD-LSPKARDL 429

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A+L +   +V +DD    IG ++   D +G P  V V    + D+ V ++ R T  +E 
Sbjct: 430 AAQLRQWW-NVDFDDAQA-IGKRYRRQDEIGTPFCVTVDFDTLDDNAVTVRDRDTMSQER 487

Query: 429 MSLEEVINYASHRF 442
           ++L++V +Y + R 
Sbjct: 488 IALDKVEDYLAERL 501


>gi|328907189|gb|EGG26955.1| glycyl-tRNA synthetase [Propionibacterium sp. P08]
          Length = 504

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 67/434 (15%), Positives = 133/434 (30%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P G +  +N+           R   + +    +   ++WV SG    +   +    
Sbjct: 75  WDYGPFGVELKENIKRQWWRCMVTYRDDVVGLDSSVILPREVWVASGHVGVFNDPLTECL 134

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + + M      E            S             K +  E R    ++++    
Sbjct: 135 SCHKR-MRADHLQEGYAAKHGMDDPDSVPLEEINCPNCGNKGQWTEPRDFNMMLKTYLGP 193

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG---- 204
           ++D          +       F + L    +         G            I      
Sbjct: 194 VEDEAGLHYLRPETAQGIFVNFQNVLTSARKKPPFGIVQTGKSFRNEITPGNFIFRTREF 253

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V   T E       D           + D++       E+ +     T D+ 
Sbjct: 254 EQMEMEFFVEPGTDEEWHQYWIDERTNWYTDLGINADNLRHYEHPKEKLSHYSKRTVDIE 313

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F      +     GI     F  GT  K+S    + F  A  K +   +     G 
Sbjct: 314 YKFGFAGSDWGELE---GIANRTDFDLGTHTKHSGKDLSYFDQAQNKRYLPYVIEPAAGL 370

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       +AP K +++ +  +          +
Sbjct: 371 TRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRLAPVKAAVLPLSRNSD-LSPKARDL 429

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A+L +   +V +DD    IG ++   D +G P  V V    + D+ V ++ R T  +E 
Sbjct: 430 AAQLRQWW-NVDFDDAQA-IGKRYRRQDEIGTPFCVTVDFDTLDDNAVTVRDRDTMSQER 487

Query: 429 MSLEEVINYASHRF 442
           ++L++V +Y + R 
Sbjct: 488 IALDKVEDYLAERL 501


>gi|159041076|ref|YP_001540328.1| threonyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
 gi|189083601|sp|A8MBZ5|SYT_CALMQ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157919911|gb|ABW01338.1| threonyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
          Length = 613

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 57/372 (15%), Positives = 127/372 (34%), Gaps = 43/372 (11%)

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           S     +G+ M      +D+ ++           + +  + SYRNLP    +I   +R E
Sbjct: 266 SEHAGLFGERMY--ITESDEELVMRYAACFQQFAMIKDWVLSYRNLPLGMLEIADSYRYE 323

Query: 143 LRP-RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                    R R F M D + F    + +     ++         R+G   + +   S  
Sbjct: 324 QPGETVLCFRLRRFYMPDLHIFVKDLKEAMDVGLRLHAKIFEEIRRIGRDYVSLYNVSKE 383

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
              D + +++V                      E    +    L  ++E     +    +
Sbjct: 384 FF-DQNKDYLV----------------------ELARREGKPILVRVLEGAKYYWVLNVE 420

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-- 319
            H   + D L   + ++    ++G+   FG          ++       Y  +    I  
Sbjct: 421 YH---IIDELKRPREIATFQFDIGNAQRFG--------IKYRDEGNNIKYPVIIHTAILG 469

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCD 378
              R + A+++++   +      ++  +   +   +        +   ++  R+ + G  
Sbjct: 470 SIERFIFALLDTAAINEANGKVPALPTWITPVQVRVIPVSSGYNEGAIELARRIEEAGFR 529

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  E +G +   A+ L  P  V+ G +      + ++ R  G +  MS+EE++N  
Sbjct: 530 VEVDDRDETVGRKIRDAETLWVPYIVVFGEREAKTGSLSVRVRGVG-QVSMSIEELLNRL 588

Query: 439 SHRFSN--NRPV 448
           +        +P+
Sbjct: 589 NEETKGYPRKPL 600


>gi|268323272|emb|CBH36860.1| threonyl-tRNA synthetase [uncultured archaeon]
          Length = 626

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 147/458 (32%), Gaps = 62/458 (13%)

Query: 13  ENPRDAEIAS-H-KLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
           E  R+ +    H +LM R            G   + P G+     +   +R+  +  GA+
Sbjct: 192 EKRREVDKIPPHVELMKRLEIADYEPASDPGNMRFYPKGKLIKGLLEDYVRKSVSEYGAV 251

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRN--------DKAMIYGPTHEEVMTDIFR 119
           E+  P + S      +G   +    + R   R            +    +       + +
Sbjct: 252 EVETPIMYS------TGH-PALKDYLERFPARQYSMVGKGGKPDLFLRFSACFGQFLMSK 304

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
               SY+NLP   +++   FR E R    G+ R R+F M D ++       +   + K +
Sbjct: 305 DMSISYKNLPLKIFELAPSFRKEKRGELVGLRRLRKFTMPDMHTLCRDMNEALDEFKKQY 364

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              +++   +G  +                         E  +  +K+F D        D
Sbjct: 365 EFCIQVLEGIGFSTSDY----------------------EVAIRFTKEFYD-ANKGFVED 401

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
              I     ++E W   +            D+L +   +S   I+V        + +   
Sbjct: 402 LVQIAGKPVLIECWDQRFFYFVLKFEFNFVDALGKASALSTVQIDV--------ENAERY 453

Query: 299 SATFKGADGKDHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPF-KISLINIK 355
             T+  A+G+     +          R + A++E ++  K   +   +  +   + + I 
Sbjct: 454 GITYIDANGEKKRPIILHCSPSGAIERCIYALLEKAYLEKEGGFMPMLPLWLSPTQLRIL 513

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +   +  + I   L   G  V  DD  E +  +   A     P   +VG K V +  
Sbjct: 514 PVAERHLEYIDSILPAL--NGIRVDVDDREETVSKKIRDAGREWIPYVAVVGDKEVENKT 571

Query: 416 VEIKHRL-----TGIREDMSLEEVINYASHRFSNNRPV 448
           + +  R           +MS+  +           + +
Sbjct: 572 LSVTIRGESSKKKKKVVEMSVSALRKRIEEDVKAKKNI 609


>gi|302869265|ref|YP_003837902.1| glycyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|302572124|gb|ADL48326.1| glycyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
          Length = 459

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 68/435 (15%), Positives = 132/435 (30%), Gaps = 43/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV           R   + +    + +  +W  SG    +   +    
Sbjct: 33  WDYGPLGVELKENVRRQWWRTMVQQRDDVVGLDSAVILARKVWEASGHIAEFVDPL---T 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +       +   H E   +       +                 E +   G+M++    +
Sbjct: 90  ECQSCHKRFRADHLEEAYEAKHGKPLTSLTELNCPNCGNKGTFTEPKMFNGLMKTYLGPV 149

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD------------ 205
           +              +   +FV+Y  +      K     A++G    +            
Sbjct: 150 ESDEGMH---YLRPETAQGIFVNYKNVETVARKKPPFGIAQTGKSFRNEITPGNFIFRTR 206

Query: 206 ----LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E                     +++       E+ +     T D
Sbjct: 207 EFEQMEMEFFVEPGTDEQWHEYWLSERWNWYLDLGLSEENLRFYEHPKEKLSHYSKRTVD 266

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     F      +     GI     F   T  K+S    + F    G+     +     
Sbjct: 267 IEYRFRFGGSEFAELE---GIANRTDFDLATHSKHSGVDLSYFDQGKGERWMPYVIEPAA 323

Query: 320 GAMRVVAAVIESSHDGKGIIWPD------SVAPFKISLINIK------AHDQVCRDACEK 367
           G  R V A +  ++D              +V  F   L  +K      + ++      ++
Sbjct: 324 GLTRAVLAFLLEAYDEDEAPNTKGGVDKRTVMRFDPRLAPVKVAVLPLSRNEALSPKAKQ 383

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L K    V +DD    IG ++   D +G P  V V    + D+ V +++R T  +E
Sbjct: 384 LATDLRKRWV-VEFDDSQA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRNRDTMTQE 441

Query: 428 DMSLEEVINYASHRF 442
            +SL++V  Y   R 
Sbjct: 442 RVSLDQVERYLIERL 456


>gi|299739951|ref|XP_001840374.2| proline-tRNA ligase [Coprinopsis cinerea okayama7#130]
 gi|298404017|gb|EAU81430.2| proline-tRNA ligase [Coprinopsis cinerea okayama7#130]
          Length = 718

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 59/433 (13%), Positives = 128/433 (29%), Gaps = 62/433 (14%)

Query: 26  MLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ES 83
           +++  M+  +S  G Y   P      + +      E  + G      P   S  +   E 
Sbjct: 225 LIKADMLDYYSVSGCYILKPWSYSIWEEIQTWFNAEIKKLGVQNSYFPMFVSQSVLEREK 284

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
              + +  E+  +       +                   S     +  +    +     
Sbjct: 285 DHIEGFSPEVAWVTRAGQSDLEEPIAIRPTSETAMYPLSPSNPPPDYAKWIRSHRDLPLK 344

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
             ++  +   EF                                   K+      +    
Sbjct: 345 LNQWNSVVRWEF-----------------------------------KNPQPFLRTREFL 369

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
               H   +  +  +T+V    D               I  + S  E++      T    
Sbjct: 370 WQEGHTAFLTKEEADTEVRQILDLYRQVYEDLLA-VPVIPGIKSEKEKFAGGLYTT---- 424

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYS--LPMSATFKGADGK-DHYVQMGSYGIG 320
              L   +P     S RGI+       G  +S     +   +  +     YV   S+G+ 
Sbjct: 425 --TLEGFIP----TSGRGIQAATSHCLGQNFSRPEMFNIFVEDPENPGKKYVWQNSWGL- 477

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI----KAHDQV---CRDACEKIYARLS 373
           + R +   +    D +G++ P  VA  ++ ++      K  D+      DACE + ++L 
Sbjct: 478 STRAIGVCVMVHGDNQGLVLPPRVASVQVVVVPCGITAKTSDEERKRINDACEALASKLR 537

Query: 374 KVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFV-SDSKVEIKHRLTGIREDMSL 431
           +       D       G +F   +  G P+++ +G + +  +  + ++ R TG++  + L
Sbjct: 538 EGDIRAKADLRDGYTPGWKFNEWEQKGVPVRLEIGPQDIKKNQTLSVR-RDTGVKAPLPL 596

Query: 432 EEVINYASHRFSN 444
           + +         N
Sbjct: 597 DGITATVQDLLKN 609


>gi|302667978|ref|XP_003025567.1| hypothetical protein TRV_00207 [Trichophyton verrucosum HKI 0517]
 gi|291189682|gb|EFE44956.1| hypothetical protein TRV_00207 [Trichophyton verrucosum HKI 0517]
          Length = 613

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 134/445 (30%), Gaps = 82/445 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +    +  +      S P   S D L 
Sbjct: 104 QQVLLKGEMLDYYDVSGCFVLKPHSFFIWEQIQSWFDAKIKQMNVKNCSFPLFVSEDVLK 163

Query: 81  VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +    +  +       PT E VM   +   I+S+R+LP    Q  
Sbjct: 164 KEKDHIEGFAAEVAWVTHAGNSPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 223

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT E +     ++                   
Sbjct: 224 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTREEAHTEVLQILQ----------------- 266

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAP 255
                      H   V                      E      I    +  E++    
Sbjct: 267 -----------HYAHVY--------------------EELLAVPVIQGQKTDKEKFAGGL 295

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y  T + +              + RGI+ G     G  +S     T +    +    +  
Sbjct: 296 YTTTVEGYIPA-----------TGRGIQGGTSHGLGQNFSKMFGITVEDPSARPDEKKPP 344

Query: 316 SYGIGA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRD 363
            +          R +  ++    D +G++ P  VA  +  ++ +                
Sbjct: 345 LHVWQNSWGLSTRTIGVMVMIHGDNRGLVLPPRVADIQTVIVPVGLGAKTPDEERAAIMA 404

Query: 364 ACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             E I   LS  G  V  D       G +F   +L G PL++  G    + S V    R 
Sbjct: 405 EIEAIATVLSAAGVRVEVDKRDGYTPGWKFNDWELKGIPLRLEFGPGESAGSFVTTSRRD 464

Query: 423 --TGI-REDMSLEEVINYASHRFSN 444
                 +  + ++++          
Sbjct: 465 IAGKEGKSSIQIKDLGTAVPALLET 489


>gi|332798643|ref|YP_004460142.1| glycyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
 gi|332696378|gb|AEE90835.1| glycyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
          Length = 460

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 72/453 (15%), Positives = 147/453 (32%), Gaps = 48/453 (10%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADL 79
           R G I Q S    G+   + + PLG +   NV     ++    R   + +    L    +
Sbjct: 18  RRGFIFQGSEIYGGLANTWDYGPLGIELKRNVKDYWWKKVVHERDDVVGLDSAILMHPKV 77

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG    +   ++                E+          KS + L    +  ++K 
Sbjct: 78  WEASGHVAGFNDALIDCKQC-KSRFRADHLIEDS--LNIHVEGKSVQELTEIIHDNKIKC 134

Query: 140 RD-------ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH------ 186
                    E R    + ++ + + +D+ S       +       F + L          
Sbjct: 135 PTCGSVAWTEARVFNLMFKTYQGVTEDSSSIVYLRPETAQGIFVNFKNVLDSCRMKLPFG 194

Query: 187 --------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                   R  +        +          F+   D  E   +  +  +DF +      
Sbjct: 195 IAQIGKSFRNEITPGNFTFRTREFEQMELEFFVKPGDDQEWFEYWRQFMVDFFV--SLGV 252

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             + + L     +  + Y+  +     K      E   V+ R            +YS   
Sbjct: 253 KKENLRLRDHSPEELSHYSKGTTDLEYKFPFGWGELWGVANRTDYDLSRH---MEYSGKS 309

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKIS 350
              F   + K     +    +GA R + AV+  ++D + +             +AP K +
Sbjct: 310 LTYFDPKENKQIVPYVVEPSLGADRAILAVLCDAYDEEEVQGDTRVVLHLKPEIAPIKCA 369

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ +    +   +   K+Y  L K    + +D+ G  IG ++   D +G P  V +    
Sbjct: 370 VLPLSKK-EPLEELACKVYHDLKKY-YHMEYDNTG-SIGKRYRRQDEIGTPFAVTIDFDS 426

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + D+KV I+ R T  ++ + + +V +Y   +  
Sbjct: 427 LEDNKVTIRDRDTMQQDRIEINQVRDYLKEKLR 459


>gi|327357537|gb|EGE86394.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 601

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 71/203 (34%), Positives = 115/203 (56%), Gaps = 1/203 (0%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           L+++ G + Q   G++  LPLG +  + +  ++ +     GA ++S+ ++ S  LW +SG
Sbjct: 30  LLIQGGFLRQAYSGVFHMLPLGLRVQEKLERLVDKHMRTLGASKLSLSSISSQALWEKSG 89

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           R      E  +  DR +   +  PTHEE +T +    + SYR+LP   YQI  K+RDE R
Sbjct: 90  RLKK-DSEFFKFQDRKEARFLLAPTHEEEITSLVAGAVNSYRDLPLRVYQISRKYRDEPR 148

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           PR G++R REF+MKD Y+FD +PE +  +Y+ +  +Y+R+F  L +  +   A+SG +GG
Sbjct: 149 PRQGLLRGREFIMKDLYTFDYSPETAIKTYSAVKKAYIRLFDELRIPYMIATADSGNMGG 208

Query: 205 DLSHEFIVLADTGETQVFCSKDF 227
            LSHEF +    GE  +      
Sbjct: 209 SLSHEFHLPNPKGEDTIISCSSC 231



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 97/193 (50%), Gaps = 21/193 (10%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-------------KGADGKDHYVQM 314
                E+   +   IE+ H F+ GT+YS  ++A+                       ++M
Sbjct: 411 CSKCGEHTVQTHTAIELAHTFHLGTRYSKVLNASVAVPLTLLKDGSKTDDTSTLSVPLEM 470

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL-- 372
           G +GIG  R+++AV ++  D KG+ WP ++APF++ +I     D+      E++Y  +  
Sbjct: 471 GCHGIGVSRMISAVADTLADSKGLNWPRAIAPFEVIIIP----DKGLEGEAERVYDDING 526

Query: 373 SKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDMS 430
            ++G  DV  DD    I  +   ADL+G+P+ +++G  + +++K+E++ R    +RE +S
Sbjct: 527 RQIGAVDVIVDDRDRNIPWKLRDADLIGYPVIIVIGKSWKTENKLEVQCRRLNNLRETVS 586

Query: 431 LEEVINYASHRFS 443
           L+++  +      
Sbjct: 587 LQDLHPFTKSLLD 599


>gi|225570967|ref|ZP_03779990.1| hypothetical protein CLOHYLEM_07071 [Clostridium hylemonae DSM
           15053]
 gi|225160429|gb|EEG73048.1| hypothetical protein CLOHYLEM_07071 [Clostridium hylemonae DSM
           15053]
          Length = 473

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 147/443 (33%), Gaps = 52/443 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG    +   +
Sbjct: 43  WDYGNLGVELKNNVKRAWWQKF----VQESPYNVGVDCAILMNPQTWVASGHLGGFSDPL 98

Query: 94  LRLADRNDKAMIYGPTHEEVMT--DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +   + +++        +            I  + +     Y  + +       +     
Sbjct: 99  MDCKECHERFRADKMIEDFAHANGLDIGDSIDGWSHEQMEAYIKEHEVPCPTCGKHNFTE 158

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP- 201
            REF +       +T +     Y +          F +  R   +     I    +S   
Sbjct: 159 IREFNLMFKTFQGVTEDAKSVVYLRPETAQGIFVNFKNVQRTSRKKIPFGICQVGKSFRN 218

Query: 202 ------------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                           +  EF     T        K F    + +     D++   +   
Sbjct: 219 EITPGNFTFRTREFEQMELEFFCEPGTDLEWFNYWKKFCLNWLETLGLKDDEVRYRDHSP 278

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E+ +    AT+D+     F    E   V+ R              S    + F     + 
Sbjct: 279 EELSHYSNATTDIEYLFPF-GWGELWGVADRTNYDLTQHQ---NVSKQDMSYFDDEKKEK 334

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQV 360
           +   +    +GA R+V A + S++D + +          +  ++AP K+ ++ +      
Sbjct: 335 YIPYVIEPSLGADRMVLAFLCSAYDEEELEGGDMRTVLHFHPALAPIKVGVLPLSKK--- 391

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  EK+YA+LS+   +  +DD G  IG ++   D +G P  V    +   D  V ++ 
Sbjct: 392 LNEGAEKVYAQLSRK-YNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFESEEDGAVTVRD 449

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +E + +EE+ +Y + +F 
Sbjct: 450 RDTMEQERVKIEELESYFAKKFE 472


>gi|315504260|ref|YP_004083147.1| glycyl-tRNA synthetase [Micromonospora sp. L5]
 gi|315410879|gb|ADU08996.1| glycyl-tRNA synthetase [Micromonospora sp. L5]
          Length = 459

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 68/435 (15%), Positives = 132/435 (30%), Gaps = 43/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV           R   + +    + +  +W  SG    +   +    
Sbjct: 33  WDYGPLGVELKENVRRQWWRTMVQQRDDVVGLDSAVILARKVWEASGHIAEFVDPL---T 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +       +   H E   +       +                 E +   G+M++    +
Sbjct: 90  ECQSCHKRFRADHLEEAYEAKHGKPLTSLTELNCPNCGNKGTFTEPKMFNGLMKTYLGPV 149

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD------------ 205
           +              +   +FV+Y  +      K     A++G    +            
Sbjct: 150 ESDEGMH---YLRPETAQGIFVNYKNVETVARKKPPFGIAQTGKSFRNEITPGNFIFRTR 206

Query: 206 ----LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E                     +++       E+ +     T D
Sbjct: 207 EFEQMEMEFFVEPGTDEQWHEYWLSERWNWYLDLGLSEENLRFYEHPKEKLSHYSKRTVD 266

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     F      +     GI     F   T  K+S    + F    G+     +     
Sbjct: 267 IEYRFRFGGSEFAELE---GIANRTDFDLSTHSKHSGVDLSYFDQGKGERWMPYVIEPAA 323

Query: 320 GAMRVVAAVIESSHDGKGIIWPD------SVAPFKISLINIK------AHDQVCRDACEK 367
           G  R V A +  ++D              +V  F   L  +K      + ++      ++
Sbjct: 324 GLTRAVLAFLLEAYDEDEAPNTKGGVDKRTVMRFDPRLAPVKVAVLPLSRNEALSPKAKQ 383

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L K    V +DD    IG ++   D +G P  V V    + D+ V +++R T  +E
Sbjct: 384 LATDLRKRWV-VEFDDSQA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRNRDTMAQE 441

Query: 428 DMSLEEVINYASHRF 442
            +SL++V  Y   R 
Sbjct: 442 RVSLDQVERYLIERL 456


>gi|296269165|ref|YP_003651797.1| glycyl-tRNA synthetase [Thermobispora bispora DSM 43833]
 gi|296091952|gb|ADG87904.1| glycyl-tRNA synthetase [Thermobispora bispora DSM 43833]
          Length = 461

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/452 (14%), Positives = 135/452 (29%), Gaps = 44/452 (9%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADL 79
           R G ++  S    G+   + + PLG +  +N+     +     R   + +    + + ++
Sbjct: 17  RRGFVYPSSEIYGGLRASWDYGPLGVELKNNIKREWWKAMVQGREDVVGVDSCVILAREV 76

Query: 80  WVESGRYDSYGKEM--------LRLADRNDKAMIYGPTHEE------VMTDIFRSHIKSY 125
           W  SG  D++   +           AD   +A       E       V      +     
Sbjct: 77  WQASGHVDTFTDPLTECLSCHKRYRADHLIEAYAAKHGAEPAGGLNDVSCPNCGNKGAFT 136

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
               F+          E     G+   R    +  +   L  + S        +  +   
Sbjct: 137 PPRQFSGLLKTFLGPVED--ESGLAYLRPETAQGIFINFLNVQQSARKKIPFGIGQIGKS 194

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
            R  +        +         EF V   T E       D           + D++   
Sbjct: 195 FRNEITPGNFIFRTREFEQMEM-EFFVKPGTDEEWHQYWIDERLRWYIDLGINKDNLRLY 253

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFK 303
               E+ +     T D+     F  +   +     GI     F   +  K S    + F 
Sbjct: 254 EHPKEKLSHYSKRTVDIEYRFNFPGMEWGELE---GIANRTDFDLSSHSKASGQDLSYFD 310

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVI--ESSHDGKGIIWPDSVAPFKISLIN-------- 353
              G+ +   +     G  R     +    + D       +      + L          
Sbjct: 311 QETGQRYIPYVIEPAAGVDRTALTFLLDAYTVDEAPNAKGEMEQRTVLRLDPRLAPVKVA 370

Query: 354 --IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
               + +         + A+L +   +V +DD G  IG ++   D +G P  V +  + +
Sbjct: 371 VLPLSRNADLSPKARDLAAQLRRRW-NVEFDDAGA-IGRRYRRQDEIGTPYAVTIDFQTL 428

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            D+ V ++ R +  +E +S+++V  Y   R  
Sbjct: 429 EDNAVTVRERDSMAQERISIDQVEAYLRERLD 460


>gi|313665217|ref|YP_004047088.1| proline--tRNA ligase [Mycoplasma leachii PG50]
 gi|312949831|gb|ADR24427.1| proline--tRNA ligase [Mycoplasma leachii PG50]
          Length = 474

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/411 (13%), Positives = 125/411 (30%), Gaps = 64/411 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  + +   + EE  +     +  P L    L+  E    D +  E+  +
Sbjct: 36  GTMIFRPYGYRIWELIQKYLDEEFKKVNVDNVYFPLLIPESLFNKEKDHIDGFSPEIATV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                      + +L     +  + E L
Sbjct: 96  T---------------------------------------RVGQKKLEENLFIRPTSEVL 116

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           M D +S ++            + + +R                  I         V +  
Sbjct: 117 MMDYFSNEINSYRDLPLIYNQWCNVMRWEKTTRPF-------LRTIEFLWQEGHTVHSSY 169

Query: 217 GETQVFCSKDF-MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            E + FC K   +      E      I    +  E++     A      E L        
Sbjct: 170 NEAENFCLKILDIYEKFAKEVLLLPVICGKKTEKEKFA---GAKDTYTIESL-------- 218

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G   +F   ++      F+  + K  +    S+G+ + R++ A+I +  D 
Sbjct: 219 MFDGQALQCGTSHFFADNFTKVYDIKFQNKENKLEHAYSTSWGV-STRLIGALIMTHSDD 277

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G+    S        I    + +      E I  +LS     +  D+  +  G + + A
Sbjct: 278 NGL-VLPSKIAPIQIQIIQIKNIEQIDQVVENIKEKLSD--YRIDVDNSDKSFGFKISEA 334

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHRFSNN 445
           ++ G P+++ +G + + ++++ I  R     +  +  ++V         + 
Sbjct: 335 EIKGIPIRIEIGPRDLENNQITISRRDQQENKIKIDYKDVKKVVDQMIKDY 385


>gi|325475340|gb|EGC78525.1| glycyl-tRNA synthetase [Treponema denticola F0402]
          Length = 451

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/444 (13%), Positives = 126/444 (28%), Gaps = 37/444 (8%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADL 79
           R G + Q S       G + + PLG +  +NV+    +E  +     + +    L     
Sbjct: 17  RRGFVFQSSEIYGGQNGAWDYGPLGIELKNNVSRAWWKEMTQLHDNIVGLDAAILMHPRT 76

Query: 80  WVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           W  SG  +++     +  +   R     +     E+ +       +   R     F    
Sbjct: 77  WEASGHVENFTDPLVDCKKCKSRFRADHLPPENLEKRVCPDCGGELTDTRKFNLMFKTHI 136

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               D     +     ++   +                  ++  ++              
Sbjct: 137 GPTDDNSSVIYLRPETAQGIYVNYKNIIQSNRMKIPFGIAQIGKAFRNEIVTKNFIFRTC 196

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
             E   +       F V   T +      K              + +       ++  A 
Sbjct: 197 EFEQMEMQ------FFVKPGTDDEWFDYWKKQRWAFYEKYGVRTNKLQWHQHGKDEL-AH 249

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           YA  +     +      E + V  R                 M    +    + +   + 
Sbjct: 250 YAKDAYDIEYEFPMGFKELEGVHNRTNYDLTRH--TEYSGKDMQYIDQDNGNEKYIPYII 307

Query: 316 SYGIGAMRVVAAVIESSHDGKGI-------------IWPDSVAPFKISLINIKAHDQVCR 362
               G  R V   I  ++D + +              +  ++AP  ++++ +   D    
Sbjct: 308 ETSAGLTRNVLMFICDAYDEEKVADKGNDDDWRTVLHFHPNIAPITVAVLPLMKKD-GLA 366

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  E+I   L +      +D  G  IG ++   D +G P  V V      D+ V ++ R 
Sbjct: 367 ELAEEIRNELKEE-FKTDYDQSGA-IGKRYRRQDEVGTPFCVTVDYDSKEDNTVTLRFRD 424

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           +  +  +   E+I+       N +
Sbjct: 425 SMEQVRIPRTELISRIKTEIKNYK 448


>gi|282555147|gb|ADA82668.1| ProS [Candidatus Blochmannia vafer]
          Length = 77

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/77 (48%), Positives = 53/77 (68%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          MR ++Y L  L+E P++ E  SH+LMLR+GMI Q S G+Y+WLP+G + L  V  I+R+E
Sbjct: 1  MRATQYLLTTLKEIPKNCETISHQLMLRSGMIRQISTGLYTWLPIGLRVLRKVENIVRDE 60

Query: 61 QNRTGAIEMSVPTLQSA 77
           N    IE+S+P +Q A
Sbjct: 61 MNNISFIEISMPIIQPA 77


>gi|294933722|ref|XP_002780830.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239890921|gb|EER12625.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 341

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 75/184 (40%), Gaps = 19/184 (10%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + R ++     + GT ++      F+  +G+  + +  S+G    R +  +I    D K
Sbjct: 47  CNGRAVQGATSHFLGTHFAKMFGIEFEDRNGEKKFAEQTSWGF-TTRSIGVMIMEHGDDK 105

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR-----------DACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  ++ ++ I       +           + C+ +Y  L+  G  V  DD  
Sbjct: 106 GLVLPPRVAEVQVVIVPIPPKGAGAQWSTAELKTMIGEKCKSLYEDLNANGVRVVLDDRD 165

Query: 386 EQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR------EDMSLEEVINYA 438
           ++  G +F   +L G PL++ VG+K +    V    R TG +        + ++E +   
Sbjct: 166 DKTPGYKFNHWELKGVPLRIEVGAKDLEKGVVTFVRRNTGKKSQEAEHSSVKVKEALESI 225

Query: 439 SHRF 442
               
Sbjct: 226 QSEL 229


>gi|218884527|ref|YP_002428909.1| threonyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
 gi|218766143|gb|ACL11542.1| threonyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
          Length = 614

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 115/347 (33%), Gaps = 38/347 (10%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKD 159
           +   I           + R  + SY++LPF  +++   +R E R       R R+F M D
Sbjct: 279 EDRFILRYAACHQQFAMLRDWVISYKDLPFGVFEVADSYRLEQRGELALCFRLRKFYMPD 338

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +        +     ++         + G   + +         +++ EF+   +    
Sbjct: 339 LHILTRNIGEAIDVSMRVQAKIHEEAGKAGRSYVALY--------NITDEFL---EKYRD 387

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           ++        +P+            +   V           + H   + D+L   + ++ 
Sbjct: 388 KLVEFVKREKYPVLLAVIP----SGIYYWV--------LNVEYH---IIDNLKRPREIAT 432

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKG 337
             I+VG+   F        +  +    G+ H+  +    +  G  R +  V+++    + 
Sbjct: 433 FQIDVGNGRRF--------NIAYVDEKGEKHHPVIIHTALLGGVERYIYMVLDTGALIEA 484

Query: 338 IIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                 +  +   +   I    +   +   KI   +   G  V  DD  E +G +   A 
Sbjct: 485 SGQTPYIPTWMSPVQVRIVPVSKEYNEHAFKIAGEILSHGFRVDVDDRDETLGKKIRDAG 544

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               P  ++VG + V+   + I+ R +  +  M LEE I        
Sbjct: 545 KEWIPYIIVVGEREVNTGTINIRVRRSNDQRVMKLEEFIKLLEEEVK 591


>gi|313838644|gb|EFS76358.1| glycyl-tRNA synthetase [Propionibacterium acnes HL086PA1]
          Length = 506

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/434 (14%), Positives = 132/434 (30%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P G +  +N+           R   + +    +   ++WV SG    +   +    
Sbjct: 77  WDYGPFGVELKENIKRQWWRAMVTRRDDVVGLDSSVILPREVWVASGHVGVFNDPLTECL 136

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + + M      E        +   S             K +  E R    ++++    
Sbjct: 137 SCHKR-MRADHLQEGHAAKHGIADPDSISLEEVNCPNCGNKGQWTEPRDFNMMLKTYLGP 195

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG---- 204
           ++D          +       F + L    +         G            I      
Sbjct: 196 VEDKSGLHYLRPETAQGIFVNFQNVLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREF 255

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V   T E       D           + D++       E+ +     T DV 
Sbjct: 256 EQMEMEFFVEPGTDEEWHQYWIDVRTAWYTDLGINPDNLRHYEHPKEKLSHYSKRTVDVE 315

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F      +     GI     F  G  +++S    + +  A+ K +   +     G 
Sbjct: 316 YKFGFSGSDWGELE---GIANRTDFDLGNHSRHSGKDLSYYDQANNKRYLPYVIEPAAGL 372

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       ++P K +++ +  +          +
Sbjct: 373 TRSLMAFMVDAYTEDEAPNAKGGVDKRTVVKLDPRLSPVKAAVLPLSRNSD-LSPKARDL 431

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ARL +   +V +DD    IG ++   D +G P  + V    + D  V I+ R T  ++ 
Sbjct: 432 AARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCITVDFDSLEDDAVTIRERDTMAQQR 489

Query: 429 MSLEEVINYASHRF 442
           +S+++V  Y   + 
Sbjct: 490 VSIDKVEEYLGGKL 503


>gi|50842433|ref|YP_055660.1| glycyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|50840035|gb|AAT82702.1| glycyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|313764544|gb|EFS35908.1| glycyl-tRNA synthetase [Propionibacterium acnes HL013PA1]
 gi|313772417|gb|EFS38383.1| glycyl-tRNA synthetase [Propionibacterium acnes HL074PA1]
 gi|313792233|gb|EFS40334.1| glycyl-tRNA synthetase [Propionibacterium acnes HL110PA1]
 gi|313801818|gb|EFS43052.1| glycyl-tRNA synthetase [Propionibacterium acnes HL110PA2]
 gi|313807427|gb|EFS45914.1| glycyl-tRNA synthetase [Propionibacterium acnes HL087PA2]
 gi|313809935|gb|EFS47656.1| glycyl-tRNA synthetase [Propionibacterium acnes HL083PA1]
 gi|313813027|gb|EFS50741.1| glycyl-tRNA synthetase [Propionibacterium acnes HL025PA1]
 gi|313816086|gb|EFS53800.1| glycyl-tRNA synthetase [Propionibacterium acnes HL059PA1]
 gi|313818473|gb|EFS56187.1| glycyl-tRNA synthetase [Propionibacterium acnes HL046PA2]
 gi|313820236|gb|EFS57950.1| glycyl-tRNA synthetase [Propionibacterium acnes HL036PA1]
 gi|313822955|gb|EFS60669.1| glycyl-tRNA synthetase [Propionibacterium acnes HL036PA2]
 gi|313825117|gb|EFS62831.1| glycyl-tRNA synthetase [Propionibacterium acnes HL063PA1]
 gi|313827686|gb|EFS65400.1| glycyl-tRNA synthetase [Propionibacterium acnes HL063PA2]
 gi|313830266|gb|EFS67980.1| glycyl-tRNA synthetase [Propionibacterium acnes HL007PA1]
 gi|313834067|gb|EFS71781.1| glycyl-tRNA synthetase [Propionibacterium acnes HL056PA1]
 gi|314915540|gb|EFS79371.1| glycyl-tRNA synthetase [Propionibacterium acnes HL005PA4]
 gi|314918337|gb|EFS82168.1| glycyl-tRNA synthetase [Propionibacterium acnes HL050PA1]
 gi|314919992|gb|EFS83823.1| glycyl-tRNA synthetase [Propionibacterium acnes HL050PA3]
 gi|314925297|gb|EFS89128.1| glycyl-tRNA synthetase [Propionibacterium acnes HL036PA3]
 gi|314932005|gb|EFS95836.1| glycyl-tRNA synthetase [Propionibacterium acnes HL067PA1]
 gi|314955874|gb|EFT00274.1| glycyl-tRNA synthetase [Propionibacterium acnes HL027PA1]
 gi|314958355|gb|EFT02458.1| glycyl-tRNA synthetase [Propionibacterium acnes HL002PA1]
 gi|314960090|gb|EFT04192.1| glycyl-tRNA synthetase [Propionibacterium acnes HL002PA2]
 gi|314962891|gb|EFT06991.1| glycyl-tRNA synthetase [Propionibacterium acnes HL082PA1]
 gi|314968031|gb|EFT12130.1| glycyl-tRNA synthetase [Propionibacterium acnes HL037PA1]
 gi|314973272|gb|EFT17368.1| glycyl-tRNA synthetase [Propionibacterium acnes HL053PA1]
 gi|314975947|gb|EFT20042.1| glycyl-tRNA synthetase [Propionibacterium acnes HL045PA1]
 gi|314978296|gb|EFT22390.1| glycyl-tRNA synthetase [Propionibacterium acnes HL072PA2]
 gi|314984034|gb|EFT28126.1| glycyl-tRNA synthetase [Propionibacterium acnes HL005PA1]
 gi|314987797|gb|EFT31888.1| glycyl-tRNA synthetase [Propionibacterium acnes HL005PA2]
 gi|314990019|gb|EFT34110.1| glycyl-tRNA synthetase [Propionibacterium acnes HL005PA3]
 gi|315078106|gb|EFT50157.1| glycyl-tRNA synthetase [Propionibacterium acnes HL053PA2]
 gi|315080736|gb|EFT52712.1| glycyl-tRNA synthetase [Propionibacterium acnes HL078PA1]
 gi|315084406|gb|EFT56382.1| glycyl-tRNA synthetase [Propionibacterium acnes HL027PA2]
 gi|315085746|gb|EFT57722.1| glycyl-tRNA synthetase [Propionibacterium acnes HL002PA3]
 gi|315088836|gb|EFT60812.1| glycyl-tRNA synthetase [Propionibacterium acnes HL072PA1]
 gi|315096185|gb|EFT68161.1| glycyl-tRNA synthetase [Propionibacterium acnes HL038PA1]
 gi|315098446|gb|EFT70422.1| glycyl-tRNA synthetase [Propionibacterium acnes HL059PA2]
 gi|315101196|gb|EFT73172.1| glycyl-tRNA synthetase [Propionibacterium acnes HL046PA1]
 gi|315105473|gb|EFT77449.1| glycyl-tRNA synthetase [Propionibacterium acnes HL030PA1]
 gi|315108418|gb|EFT80394.1| glycyl-tRNA synthetase [Propionibacterium acnes HL030PA2]
 gi|327326101|gb|EGE67891.1| glycine--tRNA ligase [Propionibacterium acnes HL096PA2]
 gi|327332028|gb|EGE73765.1| glycine--tRNA ligase [Propionibacterium acnes HL096PA3]
 gi|327443231|gb|EGE89885.1| glycyl-tRNA synthetase [Propionibacterium acnes HL013PA2]
 gi|327446016|gb|EGE92670.1| glycyl-tRNA synthetase [Propionibacterium acnes HL043PA2]
 gi|327448005|gb|EGE94659.1| glycyl-tRNA synthetase [Propionibacterium acnes HL043PA1]
 gi|327450871|gb|EGE97525.1| glycyl-tRNA synthetase [Propionibacterium acnes HL087PA3]
 gi|327453052|gb|EGE99706.1| glycyl-tRNA synthetase [Propionibacterium acnes HL092PA1]
 gi|327453781|gb|EGF00436.1| glycyl-tRNA synthetase [Propionibacterium acnes HL083PA2]
 gi|328753558|gb|EGF67174.1| glycyl-tRNA synthetase [Propionibacterium acnes HL020PA1]
 gi|328754290|gb|EGF67906.1| glycyl-tRNA synthetase [Propionibacterium acnes HL087PA1]
 gi|328760397|gb|EGF73965.1| glycine--tRNA ligase [Propionibacterium acnes HL099PA1]
 gi|332675345|gb|AEE72161.1| glycine--tRNA ligase [Propionibacterium acnes 266]
          Length = 506

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/434 (14%), Positives = 132/434 (30%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P G +  +N+           R   + +    +   ++WV SG    +   +    
Sbjct: 77  WDYGPFGVELKENIKRQWWRAMVTRRDDVVGLDSSVILPREVWVASGHVGVFNDPLTECL 136

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + + M      E        +   S             K +  E R    ++++    
Sbjct: 137 SCHKR-MRADHLQEGHAAKHGIADPDSISLEEVNCPNCGNKGQWTEPRDFNMMLKTYLGP 195

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG---- 204
           ++D          +       F + L    +         G            I      
Sbjct: 196 VEDKSGLHYLRPETAQGIFVNFQNVLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREF 255

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V   T E       D           + D++       E+ +     T DV 
Sbjct: 256 EQMEMEFFVEPGTDEEWHQYWIDVRTAWYTDLGINPDNLRHYEHPKEKLSHYSKRTVDVE 315

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F      +     GI     F  G  +++S    + +  A+ K +   +     G 
Sbjct: 316 YKFGFSGSDWGELE---GIANRTDFDLGNHSRHSGKDLSYYDQANNKRYLPYVIEPAAGL 372

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       ++P K +++ +  +          +
Sbjct: 373 TRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRLSPVKAAVLPLSRNSD-LSPKARDL 431

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ARL +   +V +DD    IG ++   D +G P  + V    + D  V I+ R T  ++ 
Sbjct: 432 AARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCITVDFDSLEDDAVTIRERDTMAQQR 489

Query: 429 MSLEEVINYASHRF 442
           +S+++V  Y   + 
Sbjct: 490 VSIDKVEEYLGGKL 503


>gi|167759228|ref|ZP_02431355.1| hypothetical protein CLOSCI_01575 [Clostridium scindens ATCC 35704]
 gi|167663102|gb|EDS07232.1| hypothetical protein CLOSCI_01575 [Clostridium scindens ATCC 35704]
          Length = 482

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 144/443 (32%), Gaps = 52/443 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG    +   +
Sbjct: 52  WDYGNLGVELKNNVKRAWWQKF----VQESPYNVGVDCAILMNPQTWVASGHLGGFSDPL 107

Query: 94  LRLADRNDKAMIYGPTHE--EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +   + +++        E            I  + +     Y  + +       +     
Sbjct: 108 MDCKECHERFRADKMIEEYAHANGLDIADSIDGWSHEQMEAYIKEHEVPCPSCGKHNFTE 167

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP- 201
            REF +       +T +     Y +          F +  R   +     I    +S   
Sbjct: 168 IREFNLMFKTFQGVTEDAKSVVYLRPETAQGIFVNFKNVQRTSRKKIPFGICQIGKSFRN 227

Query: 202 ------------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                           +  EF     T        K F    + +     D++   +   
Sbjct: 228 EITPGNFTFRTREFEQMELEFFCEPGTDLEWFNYWKSFCLNWLETLGLKDDEVRYRDHSP 287

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E+ +    AT+DV          E   ++ R              S    + F       
Sbjct: 288 EELSHYSKATTDV-EFLFPFGWGELWGIADRTDFDLTQHQ---NTSKQDMSYFDDEKKAK 343

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQV 360
           +   +    +GA R+V A + S++D + +          +  ++AP KI ++ +      
Sbjct: 344 YVPYVIEPSLGADRMVLAFLCSAYDEEELEGGDVRTVLHFHPALAPIKIGVLPLSKK--- 400

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  EK+YA+LSK   +  +DD G  IG ++   D +G P  V    +   D  V ++ 
Sbjct: 401 LNEGAEKVYAQLSKK-YNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFESEEDGAVTVRD 458

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +E + +E++  Y + +F 
Sbjct: 459 RDTMEQERIKIEDLDAYFAKKFE 481


>gi|315103267|gb|EFT75243.1| glycyl-tRNA synthetase [Propionibacterium acnes HL050PA2]
          Length = 506

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/434 (14%), Positives = 133/434 (30%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P G +  +N+           R   + +    +   ++WV SG    +   +    
Sbjct: 77  WDYGPFGVELKENIKRQWWRAMVTRRDDVVGLDSSVILPREVWVASGHVGVFNDPLTECL 136

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + + M      E        +   S             K +  E R    ++++    
Sbjct: 137 SCHKR-MRADHLQEGHAAKHGIADPDSISLEEVNCPNCGNKGQWTEPRDFNMMLKTYLGP 195

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG---- 204
           ++D          +       F + L    +         G            I      
Sbjct: 196 VEDKSGLHYLRPETAQGIFVNFQNVLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREF 255

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V   T E       D       +   + D++       E+ +     T DV 
Sbjct: 256 EQMEMEFFVEPGTDEEWHQYWIDARTAWYTNLGINPDNLRHYEHPKEKLSHYSKRTVDVE 315

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F      +     GI     F  G  +++S    + +  A+ K +   +     G 
Sbjct: 316 YKFGFTGSDWGELE---GIANRTDFDLGNHSRHSGKDLSYYDQANNKRYLPYVIEPAAGL 372

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       ++P K +++ +  +          +
Sbjct: 373 TRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRLSPVKAAVLPLSRNSD-LSPKARDL 431

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ARL +   +V +DD    IG ++   D +G P  + V    + D  V ++ R T  ++ 
Sbjct: 432 AARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCITVDFDSLEDDAVTVRERDTMAQQR 489

Query: 429 MSLEEVINYASHRF 442
           +S+++V  Y   R 
Sbjct: 490 VSIDKVEEYLGGRL 503


>gi|219849360|ref|YP_002463793.1| prolyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
 gi|259511579|sp|B8G3V5|SYP_CHLAD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|219543619|gb|ACL25357.1| prolyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
          Length = 480

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/408 (13%), Positives = 116/408 (28%), Gaps = 65/408 (15%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKA 103
            G    + +   + +    TG   +  P L     +  E+   + +  E+  +       
Sbjct: 42  HGWAIWELMQRALDDRIKATGHANVQFPLLIPKSFIMKEAEHVEGFAPEVAEVT------ 95

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
                                                             E L +     
Sbjct: 96  ----------------------------------------------RAGGEELAEPYVIR 109

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
             +     + Y+K   SY  +       +  MR E        + EF      G T    
Sbjct: 110 PTSETIIGYFYSKWIRSYRDLPLLYNQWANVMRWEMRTRPFLRTAEFW--WQEGHTAHAT 167

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
             +  +  +   +  + D +     V                 L     E      R ++
Sbjct: 168 EAEAEEETLRILHEVYADFVEKEMAVPVIRGLKTEKEKFPG-ALRSYCIEAMMQDGRALQ 226

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
            G     G  ++     TF        Y    S+G+ + R++ A+I +  D +G++ P  
Sbjct: 227 AGTSHNLGQNFARAFDITFTDQHNTIQYAWTTSWGV-STRLIGALIMTHSDDEGLVLPPR 285

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVG---CDVFWDDMG-EQIGSQFAVADLLG 399
           +AP ++ ++ I  +D+      E +  R++           DD      G +F   +L G
Sbjct: 286 LAPIQVVVVPIYKNDEERSAVMEAV-NRMTAAWKGRLRFKVDDRDTYSPGYKFNEWELKG 344

Query: 400 FPLQVIVGSKFVSDSKVEIKHRL---TGIREDMSLEEVINYASHRFSN 444
            P+++ +G K V+   V +  R       +  +    +        + 
Sbjct: 345 VPVRIEIGPKDVAKETVALARRDMPGKAGKSFVPQAGLTERIEALLAE 392


>gi|314966850|gb|EFT10949.1| glycyl-tRNA synthetase [Propionibacterium acnes HL082PA2]
 gi|314981192|gb|EFT25286.1| glycyl-tRNA synthetase [Propionibacterium acnes HL110PA3]
 gi|315091764|gb|EFT63740.1| glycyl-tRNA synthetase [Propionibacterium acnes HL110PA4]
 gi|315093229|gb|EFT65205.1| glycyl-tRNA synthetase [Propionibacterium acnes HL060PA1]
 gi|327327676|gb|EGE69452.1| glycine--tRNA ligase [Propionibacterium acnes HL103PA1]
          Length = 506

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/434 (14%), Positives = 132/434 (30%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P G +  +N+           R   + +    +   ++WV SG    +   +    
Sbjct: 77  WDYGPFGVELKENIKRQWWRAMVTRRDDVVGLDSSVILPREVWVASGHVGVFNDPLTECL 136

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + + M      E        +   S             K +  E R    ++++    
Sbjct: 137 SCHKR-MRADHLQEGHAAKHGIADPDSISLEEVNCPNCGNKGQWTEPRDFNMMLKTYLGP 195

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG---- 204
           ++D          +       F + L    +         G            I      
Sbjct: 196 VEDKSGLHYLRPETAQGIFVNFQNVLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREF 255

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V   T E       D           + D++       E+ +     T DV 
Sbjct: 256 EQMEMEFFVEPGTDEEWHQYWIDARTAWYTDLGINPDNLRHYEHPKEKLSHYSKRTVDVE 315

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F      +     GI     F  G  +++S    + +  A+ K +   +     G 
Sbjct: 316 YKFGFTGSDWGELE---GIANRTDFDLGNHSRHSGKDLSYYDQANNKRYLPYVIEPAAGL 372

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       ++P K +++ +  +          +
Sbjct: 373 TRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRLSPVKAAVLPLSRNSD-LSPKARDL 431

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ARL +   +V +DD    IG ++   D +G P  + V    + D  V ++ R T  ++ 
Sbjct: 432 AARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCITVDFDSLEDDAVTVRERDTMAQQR 489

Query: 429 MSLEEVINYASHRF 442
           +S+++V  Y   R 
Sbjct: 490 VSIDKVEEYLGGRL 503


>gi|239994811|ref|ZP_04715335.1| prolyl-tRNA synthetase [Alteromonas macleodii ATCC 27126]
          Length = 131

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/129 (36%), Positives = 76/129 (58%), Gaps = 1/129 (0%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-HDQVCRDACEKIYARL 372
           MG YGIG  R+VAA IE +HD  GI WPD +APFKI+LI +        ++A E +Y  L
Sbjct: 3   MGCYGIGVSRIVAAAIEQNHDKFGIKWPDPIAPFKIALIPMNMHKSHRIKEAAEALYEEL 62

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             +G +V +DD  E+ G  F   +L+G P  +++G + + + +VE K+R TG ++ + + 
Sbjct: 63  VALGVEVLFDDRKERPGVMFNDMELIGIPHSIVIGERNLDNQQVEYKNRRTGEKQLLDIS 122

Query: 433 EVINYASHR 441
              ++ +  
Sbjct: 123 AAKDFVAAL 131


>gi|213022828|ref|ZP_03337275.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 167

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 14/170 (8%)

Query: 280 RGIEVGHI---FYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDG 335
           R  + G +   F   ++ S    A++ G D +    V +    +G+M     ++     G
Sbjct: 1   RAWQCGTVQLDFSLPSRLS----ASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAG 56

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
               W   V    +++           +   ++  +L   G  V  D   E+IG +    
Sbjct: 57  FFPTWLAPVQVVVMNIT------DSQSEYVNELTQKLQNAGIRVKADLRNEKIGFKIREH 110

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            L   P  ++ G K V   KV ++ R       + + +VI        + 
Sbjct: 111 TLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVNDVIEKLQQEIRSR 160


>gi|328754457|gb|EGF68073.1| glycyl-tRNA synthetase [Propionibacterium acnes HL025PA2]
          Length = 506

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/434 (14%), Positives = 132/434 (30%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P G +  +N+           R   + +    +   ++WV SG    +   +    
Sbjct: 77  WDYGPFGVELKENIKRQWWRAMVTRRDDVVGLDSSVILPREVWVASGHVGVFNDPLTECL 136

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + + M      E        +   S             K +  E R    ++++    
Sbjct: 137 SCHKR-MRADHLQEGHAAKHGIADSDSISLEEVNCPNCGNKGQWTEPRDFNMMLKTYLGP 195

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG---- 204
           ++D          +       F + L    +         G            I      
Sbjct: 196 VEDKSGLHYLRPETAQGIFVNFQNVLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREF 255

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V   T E       D           + D++       E+ +     T DV 
Sbjct: 256 EQMEMEFFVEPGTDEEWHQYWIDVRTAWYTDLGINPDNLRHYEHPKEKLSHYSKRTVDVE 315

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F      +     GI     F  G  +++S    + +  A+ K +   +     G 
Sbjct: 316 YKFGFSGSDWGELE---GIANRTDFDLGNHSRHSGKDLSYYDQANNKRYLPYVIEPAAGL 372

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       ++P K +++ +  +          +
Sbjct: 373 TRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRLSPVKAAVLPLSRNSD-LSPKARDL 431

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ARL +   +V +DD    IG ++   D +G P  + V    + D  V I+ R T  ++ 
Sbjct: 432 AARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCITVDFDSLEDDAVTIRERDTMAQQR 489

Query: 429 MSLEEVINYASHRF 442
           +S+++V  Y   + 
Sbjct: 490 VSIDKVEEYLGGKL 503


>gi|257077256|ref|ZP_05571617.1| glycyl-tRNA synthetase [Ferroplasma acidarmanus fer1]
          Length = 474

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 73/470 (15%), Positives = 139/470 (29%), Gaps = 82/470 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK---EM 93
            G Y + PLG    DN+    +E     GAI +  P +    ++  SG    +     E 
Sbjct: 26  AGFYDYGPLGVLLKDNIIRTWKESYMEDGAIFLDSPNITPEPVFRASGHLARFSDLAAEC 85

Query: 94  LRLADRNDKA-------------------------------------------------- 103
            +   +                                                      
Sbjct: 86  EKCKSKFKFESVLAFNKQDIIPANLEEAKEMASDTYLKCPVCGSRITNIYDFNLMYKVSG 145

Query: 104 --MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
              +   T + +  +       +   LP    Q    FR+E+ PR  ++R REF   +  
Sbjct: 146 DYYLRPETAQGIFVNFKLLFNYNRGKLPMIVGQAGKGFRNEISPRQSLIRLREFNQCEIE 205

Query: 162 SF-DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
            F D      K  Y+   +            ++    E G I       F+         
Sbjct: 206 VFLDPENLEFKSLYDYKKIKIKPNTGEELDITVKEAFERGLISSQAFAYFV--------- 256

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
           +       +  I S    F              A YA+     +    + L +N+     
Sbjct: 257 LKTQNILENIGIESSKLRFR------QHDPDERAHYAS-----DSWDAEGLIDNEWFEIV 305

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR---VVAAVIESSHDGKG 337
           GI     F      S          + ++    +     G  R    + A    + DGK 
Sbjct: 306 GIANRTDFDLNNHQSSSGETMTTKIEEREFIPYVIEPSYGIDRILLTLMAQSLETRDGKN 365

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           ++            +      +  ++  E IY  + K    + +D+ G  IG ++A  D 
Sbjct: 366 VLKIPYPVAPYHFAVFPLMKKENLKEKAEYIYENMKKQDKYIVYDEAG-TIGKRYARQDE 424

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV--INYASHRFSNN 445
           +G P  + V  + + D+ V ++ R T  ++ + +EE+  +++ +      
Sbjct: 425 IGTPYCITVDYQTLEDNTVTVRSRDTAEQKRIKIEELLDLDFINSYIYKK 474


>gi|330861019|emb|CBX71291.1| hypothetical protein YEW_JY42990 [Yersinia enterocolitica W22703]
          Length = 195

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 63/197 (31%), Gaps = 18/197 (9%)

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    +     L D L    +     ++    F    + S    A++ G +   
Sbjct: 9   PGEGAFYGPKIEF---TLHDCLDRAWQCGTVQLD----FSLPGRLS----ASYIGENNDR 57

Query: 310 H-YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              V +    +G+M     ++   + G    W   V    +++           D  +++
Sbjct: 58  QVPVMIHRAILGSMERFIGILTEEYAGFFPTWLAPVQVVVMNIT------DSQSDYVQQV 111

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L   G     D   E+IG +     L   P  ++ G K V   K+ ++ R       
Sbjct: 112 TKKLQDAGIRAKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKIAVRTRRGKDLGS 171

Query: 429 MSLEEVINYASHRFSNN 445
           + +  V++       + 
Sbjct: 172 LDVNVVVDQLLAEIRSR 188


>gi|221109010|ref|XP_002168836.1| PREDICTED: hypothetical protein, partial [Hydra magnipapillata]
          Length = 384

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 5/157 (3%)

Query: 7   FLPILQENPR-DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L+E  R D      +L L      +  +G+  WLP G    D +   +++ Q + G
Sbjct: 229 YLELLEEAKRRDHRKLGKELDLFH-FSQRVGQGLPLWLPKGAALRDRLEQFLKKAQKKAG 287

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             ++  P +   +L+V SG Y  YG +  +        +  +  P +     +I+ S   
Sbjct: 288 YEQVVTPHIGQKELYVTSGHYAKYGADSFQPITTPAEGEEFLLKPMNCPHHCEIYNSRPW 347

Query: 124 SYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKD 159
           SY++LP  + +    +R E      G+ R R F   D
Sbjct: 348 SYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDD 384


>gi|300933216|ref|ZP_07148472.1| glycyl-tRNA synthetase [Corynebacterium resistens DSM 45100]
          Length = 459

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/436 (13%), Positives = 137/436 (31%), Gaps = 42/436 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           + + PLG +  +N+          +R   + +    +    +W  SG  + +   ++   
Sbjct: 32  WDYGPLGVELKENIKRQWWRHMVTSRRDVVGLDSSVILPKRVWEVSGHVEVFTDPLVESL 91

Query: 97  -ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  +A      +EE       + +    +              E +   G++++   
Sbjct: 92  HTHKRYRADHLLEAYEEKHGHPPANGLADINDPETGQPGKWT----EPKAFSGLLKTYLG 147

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLS 207
            + D          +       F + +    +         G            I     
Sbjct: 148 PVDDKEGLHYLRPETAQGIFTNFKNVMTTSRQKPPFGIAQVGKSFRNEITPGNFIFRTRE 207

Query: 208 HEFIVL---ADTGETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
            E + +      GE + +  K   D            +++       E+ +     T DV
Sbjct: 208 FEQMEMEFFVKPGEDEEWHQKWIDDRYQWYIDLGIKEENLRLYEHPQEKLSHYSKRTVDV 267

Query: 263 HNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                F      E + V+ R      +   G   S    + F     +     +     G
Sbjct: 268 EYAFHFKGSKWGELEGVANRTDYDLRVHSEG---SGEDLSYFDQETNERWIPYVIEPAAG 324

Query: 321 AMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEK 367
             R + A +  +++ + +                  +AP K++++ +   D       EK
Sbjct: 325 LGRAMMAFLCDAYEEEEVPNAKGGTDTRTVLKLDRRLAPIKVAVLPLSKKD-TLTPTAEK 383

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  +L  +  +V +D  G  IG ++   D +G P  V V    + D+ V ++ R T  +E
Sbjct: 384 VANQLRGLW-NVDYDVSGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAVTVRERDTMEQE 441

Query: 428 DMSLEEVINYASHRFS 443
            + ++++  Y   R +
Sbjct: 442 RVKIDDLQAYLGERLA 457


>gi|320527308|ref|ZP_08028493.1| glycyl-tRNA synthetase [Solobacterium moorei F0204]
 gi|320132332|gb|EFW24877.1| glycyl-tRNA synthetase [Solobacterium moorei F0204]
          Length = 459

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/469 (14%), Positives = 134/469 (28%), Gaps = 65/469 (13%)

Query: 20  IASHKLMLRTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSV 71
           I SH     TG + Q S    G+   + + PLG    DN+    +++  Q      E+  
Sbjct: 10  IVSHAKN--TGFVFQGSEIYGGLSNTWDFGPLGVNLKDNIKRAWQKKFIQEDPNNEEIQA 67

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
             L +  +W  SG    +   +    D       +              + + + N    
Sbjct: 68  AILMNPKVWEASGHLKGFSDPL---MDCKQCHTRHRADQLIESFSNGTVNPEGWSNEQME 124

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK--------------- 176
            Y                   R+F +          +     Y +               
Sbjct: 125 QYIKDNNVPCPDCGGHNFTSIRQFNLMFKTFQGTLEDSKNTIYLRPETAQGMFVDFKQVA 184

Query: 177 --MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                       ++G            I      E +      E + FC     D   P 
Sbjct: 185 RAYRKKLPFGICQIGKSFRNEITPGNFIFRTREFEQM------EMEFFCKPGTDDEWFPY 238

Query: 235 ENTDFDDII----------SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                 D I                ++  + Y+  +     K      E   ++ R    
Sbjct: 239 WRNFCMDWIVKLGGNPENLRFRDHEKEELSFYSKGTTDIEYKFPWGWGEVWGIADRTDYD 298

Query: 285 GHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG------ 337
                     +     T+      + +   +    +G  R+       ++D +       
Sbjct: 299 LTQHQ----NTSGKDLTYLDPITNEKYLPYVVEPAVGVERLFFMFFTDAYDEETLENGET 354

Query: 338 ---IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
              + +   +AP K +++ ++       +  E+I   L      V +D+ G  IG ++  
Sbjct: 355 RVVMRFNPVLAPVKAAILPLRKK---YAEKAEEIRHEL-SYDFTVTYDEAG-SIGKRYRR 409

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            D +G P  + +  + + D  V I++R +  +E M++EEV N       
Sbjct: 410 QDEVGTPFCITIDEQTMEDGTVTIRYRDSMEQERMTVEEVRNKICKEIR 458


>gi|42525539|ref|NP_970637.1| glycyl-tRNA synthetase [Treponema denticola ATCC 35405]
 gi|59798570|sp|Q73RR5|SYG_TREDE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|41815550|gb|AAS10518.1| glycyl-tRNA synthetase [Treponema denticola ATCC 35405]
          Length = 451

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/444 (13%), Positives = 126/444 (28%), Gaps = 37/444 (8%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADL 79
           R G + Q S       G + + PLG +  +NV+    +E  +     + +    L     
Sbjct: 17  RRGFVFQSSEIYGGQNGAWDYGPLGIELKNNVSRAWWKEMTQLHDNIVGLDAAILMHPRT 76

Query: 80  WVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           W  SG  +++     +  +   R     +     E+ +       +   R     F    
Sbjct: 77  WEASGHVENFTDPLVDCKKCKSRFRADHLPPENLEKRVCPDCGGELTDTRKFNLMFKTHI 136

Query: 137 LKFRDELRPRF-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               D     +     ++   +                  ++  ++              
Sbjct: 137 GPTDDNSSVIYLRPETAQGIYVNYKNIIQSNRMKIPFGIAQIGKAFRNEIVTKNFIFRTC 196

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
             E   +       F V   T +      K              + +       ++  A 
Sbjct: 197 EFEQMEMQ------FFVKPGTDDEWFDYWKKQRWAFYEKYGVRTNKLQWHQHGKDEL-AH 249

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           YA  +     +      E + V  R                 M    +    + +   + 
Sbjct: 250 YAKDAYDIEYEFPMGFKELEGVHNRTNYDLTRH--TEYSGKDMQYIDQDNGNEKYIPYII 307

Query: 316 SYGIGAMRVVAAVIESSHDGKGI-------------IWPDSVAPFKISLINIKAHDQVCR 362
               G  R V   I  ++D + +              +  ++AP  ++++ +   D    
Sbjct: 308 ETSAGLTRNVLMFICDAYDEEKVADKGNDDDWRTVLRFHPNIAPITVAVLPLMKKD-GLA 366

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  E+I   L +      +D  G  IG ++   D +G P  V V      D+ V ++ R 
Sbjct: 367 ELAEEIRNELKEE-FKTDYDQSGA-IGKRYRRQDEVGTPFCVTVDYDSKEDNTVTLRFRD 424

Query: 423 TGIREDMSLEEVINYASHRFSNNR 446
           +  +  +   E+I+       N +
Sbjct: 425 SMEQVRIPRTELISRIKTEIKNYK 448


>gi|327330808|gb|EGE72554.1| glycine--tRNA ligase [Propionibacterium acnes HL097PA1]
          Length = 506

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/434 (14%), Positives = 132/434 (30%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P G +  +N+           R   + +    +   ++WV SG    +   +    
Sbjct: 77  WDYGPFGVELKENIKRQWWRAMVTRRDDVVGLDSSVILPREVWVASGHVGVFNDPLTECL 136

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + + M      E        +   S             K +  E R    ++++    
Sbjct: 137 SCHKR-MRADHLQEGHAAKHGIADPDSISLEEVNCPNCGNKGQWIEPRDFNMMLKTYLGP 195

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG---- 204
           ++D          +       F + L    +         G            I      
Sbjct: 196 VEDKSGLHYLRPETAQGIFVNFQNVLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREF 255

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V   T E       D           + D++       E+ +     T DV 
Sbjct: 256 EQMEMEFFVEPGTDEEWHQYWIDVRTAWYTDLGINPDNLRHYEHPKEKLSHYSKRTVDVE 315

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F      +     GI     F  G  +++S    + +  A+ K +   +     G 
Sbjct: 316 YKFGFSGSDWGELE---GIANRTDFDLGNHSRHSGKDLSYYDQANNKRYLPYVIEPAAGL 372

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       ++P K +++ +  +          +
Sbjct: 373 TRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRLSPVKAAVLPLSRNSD-LSPKARDL 431

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ARL +   +V +DD    IG ++   D +G P  + V    + D  V I+ R T  ++ 
Sbjct: 432 AARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCITVDFDSLEDDAVTIRERDTMAQQR 489

Query: 429 MSLEEVINYASHRF 442
           +S+++V  Y   + 
Sbjct: 490 VSIDKVEEYLGGKL 503


>gi|134046250|ref|YP_001097735.1| threonyl-tRNA synthetase [Methanococcus maripaludis C5]
 gi|166223355|sp|A4FZ87|SYT_METM5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|132663875|gb|ABO35521.1| threonyl-tRNA synthetase [Methanococcus maripaludis C5]
          Length = 622

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/426 (13%), Positives = 130/426 (30%), Gaps = 48/426 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + W P G+   D ++  +       G + +  P +            D +G+   R 
Sbjct: 218 AGHFRWYPKGKLIRDLLSDYVYNLVVENGGMPVETPVMYDLQNNAIREHADKFGERQYRF 277

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSRE 154
               +K ++           + +      +++P   Y++    FR E R    G+ R R 
Sbjct: 278 KQ-GNKDLMLRFAACFGQFMMKKDMYLLPKHMPLKLYELSTYSFRYEQRGELVGLKRLRA 336

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++  +  + +  ++       L    + G       A       D   E     
Sbjct: 337 FTMPDMHTVCIDMKQAMEAFEDQLWMGL----KTGDDFKTPYAIIFRFTEDFFEE----- 387

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                          F +  E        ++  I+      +    D+    + DS    
Sbjct: 388 ----------NKEWFFGMAKEYKQKYGKDAILEILPGRKHYWVGKVDM---AVVDSFGRP 434

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                  I+V        + +          D K   + +     G++  V   +  +  
Sbjct: 435 IENPTVQIDV--------ESAERFGIVVHDGDKKVQPIILHCSPTGSVERVLCGLLENAY 486

Query: 335 GKGIIWPD-----SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              +          + P +  +I +        +   ++  +L   G    +DD  + +G
Sbjct: 487 LNTLENKPPALPTWLTPIQARVIPVGDKHA---EFALEVATKLRASGIRADFDDREDSMG 543

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-----REDMSLEEVINYASHRFSN 444
            +   A        V++G   +  SK+ +  R         +E +++EE+I   +    +
Sbjct: 544 KKVRNAGTDWVNYVVVIGDSEMESSKLTVTVREESELKKAKKESLTVEELIEKITSDVKD 603

Query: 445 --NRPV 448
              RP+
Sbjct: 604 APKRPL 609


>gi|269837371|ref|YP_003319599.1| prolyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
 gi|269786634|gb|ACZ38777.1| prolyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
          Length = 483

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/407 (14%), Positives = 120/407 (29%), Gaps = 64/407 (15%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    +N+ A +      TG      P       L  E+   + +  E+  +    +K
Sbjct: 45  PYGFALWENMQAELDRRIKETGVQNAYFPLFIPQSMLAREAEHVEGFAPEVAWVTRGGNK 104

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 105 ELEEPWAVRPT---------------------------------------------SEAI 119

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-RAESGPIGGDLSHEFIVLADTGETQV 221
                     SY  + +   +    +  +  P     S        H      +  E + 
Sbjct: 120 ICPMYARWVQSYRDLPILINQWNSVVRWEERPRAFLRSLEFLWQEGHTAHATLEEAEERT 179

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
               +     + +E              +   A    T +        +L          
Sbjct: 180 RLMLEVYRDFVETELAVPVIPGRKTESEKFAGALRTYTIEAMMGGKKWAL---------- 229

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
            + G     G  +       F   +G+  Y    S+G+ + R+V AVI    D +G+  P
Sbjct: 230 -QSGTSHNLGDHFGRVFGIEFLDRNGERRYAFNTSWGL-SFRMVGAVIMVHGDDRGLKLP 287

Query: 342 DSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADL 397
             VAP ++ ++ I   +   +    A +++   L  V   VF D   ++  G +F   +L
Sbjct: 288 PRVAPIQVVIVPIWRKESEREAVEAAVDRVRDALLPV-ARVFVDRRDDKTPGWKFNEWEL 346

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            G P+++ +G + V++ +V +  R T  ++ +S+ ++    +    +
Sbjct: 347 KGVPVRLEIGPRDVANDQVTLVRRDTHEKQAISITDLAGRITEILDD 393


>gi|70995366|ref|XP_752440.1| prolyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66850075|gb|EAL90402.1| prolyl-tRNA synthetase [Aspergillus fumigatus Af293]
          Length = 584

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 83/279 (29%), Positives = 136/279 (48%), Gaps = 18/279 (6%)

Query: 14  NPRDAEIASH-KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            P   E     +L++R G + Q   GI+  LPLG +  + +  +I +     GA ++S+ 
Sbjct: 10  KPSQGEKEDANELLIRGGFLRQAYSGIFHMLPLGLRVQEKLERLIDKHMRSVGASKVSLS 69

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           ++ S +LW +SGR            + ++   +  PTHEE +T +  S  KSYR+LP   
Sbjct: 70  SISSQELWEQSGRL----------KEGSESRFLLAPTHEEEITTLVGSLTKSYRDLPLRV 119

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           YQI  K+RDE RPR G++R REFLMKD Y+FD + E +  +YN +  +Y  +F  L +  
Sbjct: 120 YQISRKYRDEPRPRQGLLRGREFLMKDLYTFDYSVEEALKTYNLVKAAYKNLFDELKIPY 179

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-----MDFPIPSENTDFDDIISLNS 247
           +   A+SG +GG LSHEF   +  GE  V    +       +      +   +   + + 
Sbjct: 180 LVAAADSGNMGGSLSHEFHFPSSKGEDTVISCSNCDHVYNDELADGKAHGIEEAQNAGSG 239

Query: 248 IVEQWTAPYAATSD--VHNEKLFDSLPENKRVSARGIEV 284
            V  +     +T D    +  L+ ++  +K+   RG   
Sbjct: 240 QVSGFDTGATSTGDSPTVSVDLWMAISRDKKTLLRGWYP 278



 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 95/195 (48%), Gaps = 17/195 (8%)

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK---------GADGKDHYV 312
           V +        +    +   +E+GH F+ GT+YS  + A+            +  +   +
Sbjct: 392 VQDGDKCTKCAKGSLKTHTAVELGHTFHLGTRYSEVLQASVMVDRSLSGGSQSKDQLVPM 451

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           QMG +GIG  R+++AV +S  D KG+ WP ++AP+++ ++  K  +       EK+Y  L
Sbjct: 452 QMGCHGIGVSRMISAVADSLSDSKGLNWPRAMAPYEVVVVPGKGLETE----AEKVYDSL 507

Query: 373 SKVG---CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIRED 428
                   D   DD  + +G +   ADL+G+P+ V+VG  +     +E++ R    +RED
Sbjct: 508 VSNHTSSVDAILDDRDKPMGWKLGDADLIGYPVIVVVGKGWKKAQTLEVQCRRLNNLRED 567

Query: 429 MSLEEVINYASHRFS 443
           + L+++ ++      
Sbjct: 568 VPLDQLPSFVQSLLE 582


>gi|159131195|gb|EDP56308.1| prolyl-tRNA synthetase [Aspergillus fumigatus A1163]
          Length = 584

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 83/279 (29%), Positives = 136/279 (48%), Gaps = 18/279 (6%)

Query: 14  NPRDAEIASH-KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
            P   E     +L++R G + Q   GI+  LPLG +  + +  +I +     GA ++S+ 
Sbjct: 10  KPSQGEKEDANELLIRGGFLRQAYSGIFHMLPLGLRVQEKLERLIDKHMRSVGASKVSLS 69

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           ++ S +LW +SGR            + ++   +  PTHEE +T +  S  KSYR+LP   
Sbjct: 70  SISSQELWEQSGRL----------KEGSESRFLLAPTHEEEITTLVGSLTKSYRDLPLRV 119

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           YQI  K+RDE RPR G++R REFLMKD Y+FD + E +  +YN +  +Y  +F  L +  
Sbjct: 120 YQISRKYRDEPRPRQGLLRGREFLMKDLYTFDYSVEEALKTYNLVKAAYKNLFDELKIPY 179

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-----MDFPIPSENTDFDDIISLNS 247
           +   A+SG +GG LSHEF   +  GE  V    +       +      +   +   + + 
Sbjct: 180 LVAAADSGNMGGSLSHEFHFPSSKGEDTVISCSNCDHVYNDELADGKAHGIEEAQNAGSG 239

Query: 248 IVEQWTAPYAATSD--VHNEKLFDSLPENKRVSARGIEV 284
            V  +     +T D    +  L+ ++  +K+   RG   
Sbjct: 240 QVSGFDTGATSTGDSPTVSVDLWMAISRDKKTLLRGWYP 278



 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 95/195 (48%), Gaps = 17/195 (8%)

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK---------GADGKDHYV 312
           V +        +    +   +E+GH F+ GT+YS  + A+            +  +   +
Sbjct: 392 VQDGDKCTKCAKGSLKTHTAVELGHTFHLGTRYSEVLQASVMVDRSLSGGSQSKDQLVPM 451

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           QMG +GIG  R+++AV +S  D KG+ WP ++AP+++ ++  +  +       EK+Y  L
Sbjct: 452 QMGCHGIGVSRMISAVADSLSDSKGLNWPRAMAPYEVVVVPGRGLETE----AEKVYDSL 507

Query: 373 SKVG---CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIRED 428
                   D   DD  + +G +   ADL+G+P+ V+VG  +     +E++ R    +RED
Sbjct: 508 VSNHTSSVDAILDDRDKPMGWKLGDADLIGYPVIVVVGKGWKKAQTLEVQCRRLNNLRED 567

Query: 429 MSLEEVINYASHRFS 443
           + L+++ ++      
Sbjct: 568 VPLDQLPSFVQSLLE 582


>gi|326331281|ref|ZP_08197573.1| threonine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
 gi|325950914|gb|EGD42962.1| threonine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
          Length = 411

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/438 (14%), Positives = 125/438 (28%), Gaps = 45/438 (10%)

Query: 17  DAEIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           D    +  L +        +  G+  WLP G      +  +  +     G + +  P L 
Sbjct: 4   DHRDLNRDLAIFAT--DPLAGSGLPLWLPDGAVVFAELEQLAADLARADGCVPVKTPVLG 61

Query: 76  SADLWVESGRYDSYGKEMLRLADR------NDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
              L+  SG +  +  +M             +  ++  P +      ++R+   SYR LP
Sbjct: 62  KRALFERSGHWAKFADDMFPPMAVGSGSAGEEDDLVLRPANCPHHALVYRARPHSYRELP 121

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
              +++   FR E       +     +  D       P+       K   S LR    LG
Sbjct: 122 VRLHELAPMFRAERSGVLSGLSRVRQINLDDTHVFCRPDQVAEEAAKALSSALRAQDILG 181

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L+   +R                           S +       +      +        
Sbjct: 182 LRVDYVRLSLRDSSPS---------------YLGSAEQWHGAEGALRKAASEAGVEVVEA 226

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
               A Y    D+   ++ D     + ++   ++                 T+  ADG  
Sbjct: 227 PGEAAFYGPKLDL---QVVDPRGHEETIATVQVDFNQP--------ERFDLTYDAADGSR 275

Query: 310 HYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
             V M   G      RV AAV+E       +                         A   
Sbjct: 276 QRVVMVHRGTVGSMERVTAAVLERYQGRLPLWLAPVQLAVLPV-------SSSQDRAARA 328

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L   G     D  G  +G++   +     PL  ++G+      +V+++    G+  
Sbjct: 329 LVDALVAEGLRPRLDPEG-SLGARIRESRRRREPLIAVIGAVEAEAGEVQVRDVAAGVER 387

Query: 428 DMSLEEVINYASHRFSNN 445
            +   +++      +++ 
Sbjct: 388 RVGAADLVEAVKAAYASR 405


>gi|283782944|ref|YP_003373698.1| glycine--tRNA ligase [Gardnerella vaginalis 409-05]
 gi|297242774|ref|ZP_06926712.1| glycyl-tRNA synthetase [Gardnerella vaginalis AMD]
 gi|283441426|gb|ADB13892.1| glycine--tRNA ligase [Gardnerella vaginalis 409-05]
 gi|296888985|gb|EFH27719.1| glycyl-tRNA synthetase [Gardnerella vaginalis AMD]
          Length = 506

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/440 (16%), Positives = 140/440 (31%), Gaps = 42/440 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +  + +WV SG    +     E L
Sbjct: 33  WDYGPLGVALKDNIKREWWRYMVTTRGDVVGVDTSVILPSQVWVASGHVSVFNDPLIECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R+    +     E+    +  + +K                  E R    ++R+  
Sbjct: 93  NCHKRHRADKLEESYAEKHGDKMPENGLKDIACPDCGTRGNWT----EPRDFNMMLRTHL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +    +         G            I    
Sbjct: 149 GPVEDENSLHYLRPETAQGIFVDFKNVMTSTRQKPPFGIANIGKSFRNEITPGNFIFRTR 208

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E       D             +++       E+ +     T D
Sbjct: 209 EFEQMEMEFFVEPGTDEAWHQYWIDTRVRWYVDLGVKPENLRMYEHPKEKLSHYSKRTVD 268

Query: 262 VHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  +  F      E + ++ R            K+S    + F  A G+ +   +     
Sbjct: 269 IEYKFGFQGSDWGELEGIANRTDYDLSAH---AKHSGEDLSYFNQATGEKYVPYVIEPAA 325

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++D                      +AP K +++ +    ++     +
Sbjct: 326 GLTRSLMAFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQ-AVAQ 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + A L +    + +D+ G  IG ++   D +G PL V V    + D  V I+ R T  +
Sbjct: 385 DLAADLRQHDWVIDYDEAGA-IGRRYRREDEIGTPLCVTVDFDTLEDHAVTIRERDTMQQ 443

Query: 427 EDMSLEEVINYASHRFSNNR 446
           E +SL++V +Y + R +  R
Sbjct: 444 ERVSLDKVADYVASRINEKR 463


>gi|213965838|ref|ZP_03394030.1| glycyl-tRNA synthetase [Corynebacterium amycolatum SK46]
 gi|213951597|gb|EEB62987.1| glycyl-tRNA synthetase [Corynebacterium amycolatum SK46]
          Length = 460

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/440 (13%), Positives = 131/440 (29%), Gaps = 53/440 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           + + PLG +  +N+     +     R   + +    +    +W  SG   ++   ++   
Sbjct: 34  WDYGPLGVELKENIKRQWWKTFVTGRKDVVGLDSSIILPRQVWEASGHVATFTDPLVESL 93

Query: 97  -ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  +A      +E        + +    +              E +   G+M++   
Sbjct: 94  HTHKRYRADHLLEAYEAKHGHPPANGLADVPDPETGQPGKWT----EPQMFSGLMKTYLG 149

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESGP 201
            + +          +       F + +                  R  +        +  
Sbjct: 150 PVDNEQGLHYMRPETAQGIFVNFKNVMTTARIKPPFGIGQTGKAFRNEITPGNFIFRTRE 209

Query: 202 IGGDLSHEFIVLADT----GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                   F+          E    C   F+D  +  EN    D       V    A Y+
Sbjct: 210 FEQMEIEYFVAPDQAEEKFDEWVDACWNWFIDLGVNPENMRQFD-------VPDERAHYS 262

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMG 315
           A   +  E  F            G+     +  G    +S           G+ +   + 
Sbjct: 263 A-RTIDFEYRFHFQGNEWGELM-GVANRTDYDLGCHIEHSKEDLRYHDQVTGEKYVPYVI 320

Query: 316 SYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCR 362
               G  R + A +  ++  + +                  ++P K++++ +   D    
Sbjct: 321 EPSFGLTRALMAFLCDAYTEEEVPNAKGGTDTRTVLKLDPRLSPVKVAVLPLSKKD-TLT 379

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              E +  +L +    V +D  G  IG ++   D +G P  V V    + D+ V ++ R 
Sbjct: 380 PTAEAVADKLRQYWA-VDYDTSGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAVTVRDRD 437

Query: 423 TGIREDMSLEEVINYASHRF 442
           T  +E + ++E+  Y + R 
Sbjct: 438 TMEQERVKIDELEGYLAARL 457


>gi|68535685|ref|YP_250390.1| glycyl-tRNA synthetase [Corynebacterium jeikeium K411]
 gi|68263284|emb|CAI36772.1| glycyl-tRNA synthetase [Corynebacterium jeikeium K411]
          Length = 459

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/438 (13%), Positives = 129/438 (29%), Gaps = 46/438 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +R   + +    +    +W  SG  + +     E L
Sbjct: 32  WDYGPLGVELKENIKRQWWRHMVTSRRDVVGLDSSVILPKRVWEVSGHVEVFTDPLVESL 91

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R     +     E+                             E +   G++++  
Sbjct: 92  HTHKRYRADHLLEAYEEKHGHPPANGLADINDPETGQPGAWT-----EPKAFSGLLKTFL 146

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESG 200
             + D          +       F + +                  R  +        + 
Sbjct: 147 GPVDDKEGLHYLRPETAQGIFTNFKNVMTTSRQKPPFGIAQVGKSFRNEITPGNFIFRTR 206

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                    F+   +  E   +   D   + I     + D++       E+ +     T 
Sbjct: 207 EFEQMEMEFFVKPGEDEEWHQYWIDDRHQWYI-DLGINPDNLRLYEHPKEKLSHYSKRTV 265

Query: 261 DVHNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           DV     F+     E + V+ R      +   G   S    + +     +          
Sbjct: 266 DVEYAFHFNGSKWGELEGVANRTDYDLRVHSEG---SGEDLSFYDQTTEERWIPYTIEPA 322

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFK------ISLINIK------AHDQVCRDACE 366
            G  R + A +  ++  + +         +        L  +K      +  +      E
Sbjct: 323 AGLGRAMMAFLVDAYTEEEVPNAKGGTDTRTVLKLDRRLAPVKIAVLPLSKKESLTPTAE 382

Query: 367 KIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           KI  +L   G  +V +D  G  IG ++   D +G P  V V    + D+ V ++ R T  
Sbjct: 383 KIAGQLR--GFWNVDYDTSGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAVTVRERDTME 439

Query: 426 REDMSLEEVINYASHRFS 443
           +E + +E++ +Y + R +
Sbjct: 440 QERIKIEDLQSYFAERLA 457


>gi|314923081|gb|EFS86912.1| glycyl-tRNA synthetase [Propionibacterium acnes HL001PA1]
          Length = 506

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/434 (14%), Positives = 132/434 (30%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P G +  +N+           R   + +    +   ++WV SG    +   +    
Sbjct: 77  WDYGPFGVELKENIKRQWWRAMVTRRDDVVGLDSSVILPREVWVASGHVGVFNDPLTECL 136

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + + M      E        +   S             K +  E R    ++++    
Sbjct: 137 SCHKR-MRADHLQEGHAAKHGIADPDSISLEEVNCPNCGNKGQWTEPRDFNMMLKTYLGP 195

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG---- 204
           ++D          +       F + L    +         G            I      
Sbjct: 196 VEDKSGLHYLRPETAQGIFVNFQNVLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREF 255

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V   T E       D           + D++       E+ +     T DV 
Sbjct: 256 EQMEMEFFVEPGTDEEWHQYWIDARTAWYTDLGINPDNLRHYEHPKEKLSHYSKRTVDVE 315

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F      +     GI     F  G  +++S    + +  A+ K +   +     G 
Sbjct: 316 YKFGFTGSDWGELE---GIANRTDFDLGNHSRHSGKDLSYYDQANNKRYLPYVIEPAAGL 372

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       ++P K +++ +  +          +
Sbjct: 373 TRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRLSPVKAAVLPLSRNSD-LSPKARDL 431

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ARL +   +V +DD    IG ++   D +G P  V V    + D  V ++ R T  ++ 
Sbjct: 432 AARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCVTVDFDTLEDDAVTVRERDTMAQQR 489

Query: 429 MSLEEVINYASHRF 442
           +S+++V  Y   R 
Sbjct: 490 VSIDKVEEYLGGRL 503


>gi|311741374|ref|ZP_07715198.1| glycyl-tRNA synthetase beta subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303544|gb|EFQ79623.1| glycyl-tRNA synthetase beta subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 459

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/435 (13%), Positives = 133/435 (30%), Gaps = 42/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--R 95
           + + PLG +  +N+          +R   + +    +Q   +WV SG  + +   ++  R
Sbjct: 32  WDYGPLGVELKENIKRQWWRHMVQSRADVVGVDTSVIQPRQVWVSSGHVEVFSDPLVESR 91

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  +A      +EE       + +    +              E +   G++++   
Sbjct: 92  HTGKRYRADHLIEAYEEKHGHEPENGLADINDPETGQPGDWT----EPKAFSGLLKTFLG 147

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESGP 201
            + D          +       F + +                  R  +        +  
Sbjct: 148 PVDDEQGLHYLRPETAQGIFVNFKNVMTSSRMKPPFGIANIGKSFRNEITPGNFIFRTRE 207

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                   F+   +  E   +   D  ++ +       +++       E+ +     T D
Sbjct: 208 FEQMEMEFFVKPGEDEEWHQYWIDDRYNWYV-DLGIKEENLRLYEHPKEKLSHYSKRTVD 266

Query: 262 VHNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           V     F      E + V+ R      +   G   S    + +  A+ +     +     
Sbjct: 267 VEYAFGFKGSKWGELEGVANRTDYDLSVHAKG---SGEDLSYYDQANEERWIPYVIEPAA 323

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVA------PFKISLINIK------AHDQVCRDACEK 367
           G  R + A +  ++D +                    L  IK      +  +   +   K
Sbjct: 324 GLGRSMMAFLVDAYDEEEAPNAKGGTDKRVVLRLDRRLAPIKVAVLPLSKKEELSEPARK 383

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  +L     +V +D  G  IG ++   D +G P  V      + D  V ++ R T  +E
Sbjct: 384 LADKLRAHW-NVDFDVSGA-IGRRYRRQDEIGTPFCVTFDFDTLEDDAVTVRERDTMEQE 441

Query: 428 DMSLEEVINYASHRF 442
            + L+++  Y + R 
Sbjct: 442 RVKLDDLEAYLAARL 456


>gi|326471466|gb|EGD95475.1| prolyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 604

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 136/445 (30%), Gaps = 82/445 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +    +  +      S P   S D L 
Sbjct: 105 QQVLLKGEMLDYYDVSGCFVLKPHSFFIWEQIQSWFDAKIKQMNVKNCSFPLFVSEDVLK 164

Query: 81  VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +    + A+       PT E VM   +   I+S+R+LP    Q  
Sbjct: 165 KEKDHIEGFAAEVAWVTHAGNSALEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 224

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R E +     +R+REFL ++ ++  LT E +     ++                   
Sbjct: 225 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTREEAHTEVLQILQ----------------- 267

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAP 255
                      H   V                      E      I    +  E++    
Sbjct: 268 -----------HYAHVY--------------------EELLAVPVIQGQKTDKEKFAGGL 296

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y  T + +              + RGI+ G     G  +S     T +    +    +  
Sbjct: 297 YTTTVEGYIPA-----------TGRGIQGGTSHGLGQNFSKMFGITVEDPSARPDEKKPP 345

Query: 316 SYGIGA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRD 363
            +          R +  ++    D +G++ P  VA  +  ++ +                
Sbjct: 346 LHVWQNSWGLSTRTIGVMVMIHGDNRGLVLPPRVADIQTVIVPVGLGAKTPDEERAAIMA 405

Query: 364 ACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             E I   LS  G  +  D       G +F   +L G PL++  G    + S V    R 
Sbjct: 406 EIEAIATVLSAAGVRIEVDKRDGYTPGWKFNDWELKGIPLRLEFGPGESAGSFVTTSRRD 465

Query: 423 --TGI-REDMSLEEVINYASHRFSN 444
                 +  ++++++          
Sbjct: 466 IAGKEGKSSIAIKDLGTAVPALLET 490


>gi|159039341|ref|YP_001538594.1| glycyl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|157918176|gb|ABV99603.1| glycyl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 459

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 136/435 (31%), Gaps = 43/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV           R   + +    + + D+W  SG  D++   +    
Sbjct: 33  WDYGPLGVELKENVRRQWWRSMVQQRDDVVGLDSAVILARDVWAASGHLDAFVDPL---T 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +       +   H E   +       +  +              E R   G+M++    +
Sbjct: 90  ECQSCHKRFRADHLEETYEAKHGRPPASLSELNCPNCGNKGTFTEPRMFNGLMKTYLGPV 149

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD------------ 205
           +              +   +FV+Y  +      K     A++G    +            
Sbjct: 150 ESDEGLH---YLRPETAQGIFVNYKNVETVARKKPPFGIAQTGKSFRNEITPGNFIFRTR 206

Query: 206 ----LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E                      ++       E+ +     T D
Sbjct: 207 EFEQMEMEFFVEPGTDEGWHEYWLTERWNWYLDLGLTERNLRRYEHPQEKLSHYSKRTVD 266

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     F      +     GI     F   T  K+S    + F  A G+     +     
Sbjct: 267 IEYRFQF---GGTEFAELEGIANRTDFDLSTHSKHSGVDLSYFDQAKGERWIPYVIEPAA 323

Query: 320 GAMRVVAAVIESSHDGKGIIWPD------SVAPFKISLINIKA------HDQVCRDACEK 367
           G  R V A +  ++D              +V  F   L  +KA       ++       +
Sbjct: 324 GLTRAVLAFLLEAYDEDEAPNTKGGVDKRTVMRFDPRLAPVKAAVLPLSRNEALSPKARQ 383

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A L +    V +DD    IG ++   D +G P  V V    + D+ V +++R T  +E
Sbjct: 384 LAADLRQRWV-VEFDDSQA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRNRDTMAQE 441

Query: 428 DMSLEEVINYASHRF 442
            +SL++V  Y   R 
Sbjct: 442 RISLDQVERYLIERL 456


>gi|320101395|ref|YP_004176987.1| threonyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
 gi|319753747|gb|ADV65505.1| threonyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
          Length = 611

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 121/347 (34%), Gaps = 38/347 (10%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKD 159
           +   +           + R  + SY+ +PF  +++   +R E R       R R+F M D
Sbjct: 276 EDRFVLRYAACHQQFAMLRDWVISYKEMPFGAFEVADSYRLEQRGELALCFRLRKFYMPD 335

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +        +     ++         ++G   + +         +++ EF+   +    
Sbjct: 336 LHILTRDINEAIEVSMRVQSKIHEEAGKVGRSYVALY--------NITDEFL---EKYRD 384

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           ++        +P+            +   V           + H   + D+L   + ++ 
Sbjct: 385 KLVEFVKREKYPVLLAVIP----SGIYYWV--------LNVEYH---IVDNLNRPREIAT 429

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKG 337
             I+VG+   F        + T+    G+ H+  +    I  G  R +  V++++   + 
Sbjct: 430 FQIDVGNGARF--------NITYVDEKGEKHHPVIIHTAILGGVERYIYMVLDTAALMEA 481

Query: 338 IIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                 +  +   +   +    +   +   K+   L+  G  V  DD  E +G +   A 
Sbjct: 482 KGQTPYIPTWMSPVQARVIPVSREFNEHAFKVAGELASRGFRVDVDDRDETLGKKIRDAG 541

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               P  +++G + V+   + ++ R +  ++ M LEE I+  +    
Sbjct: 542 REWVPYIIVIGEREVATGTLNVRVRRSNDQKVMRLEEFIDLLNREVE 588


>gi|323490013|ref|ZP_08095234.1| histidyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
 gi|323396309|gb|EGA89134.1| histidyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
          Length = 426

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/418 (14%), Positives = 123/418 (29%), Gaps = 14/418 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y  LP        V   I +        E+  P  +  +L+        D   KEM  
Sbjct: 8   GTYDVLPDQSAKWQEVEQKINDLCRLYQYKEIRTPIFEHTELFQRGVGDTTDIVQKEMYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             DR D+++   P     +   +  + +    + P   +     FR E      + +  +
Sbjct: 68  FQDRGDRSLTLRPEGTASVVRSYVENKLFGMPDQPVKLFYTGPMFRYERPQAGRMRQFVQ 127

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP-IGGDLSHEFIVL 213
           F ++        P       +     Y  +  +     I    ++   I    +      
Sbjct: 128 FGVEA--IGSKDPAIDAEVISLAMEVYRSVGLKKLRLVINSLGDTESRIAHKEALIKHFE 185

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-- 271
               E    C       P+   +   D    L +     T      S  + +++   L  
Sbjct: 186 PSINEFCNDCQTRLEKNPLRILDCKVDRNHPLMATAPSLTNYLNEESRAYFDEVQSYLTS 245

Query: 272 ------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                  +   V          F   +      + T     G+ + +     G  A  + 
Sbjct: 246 MDIEFVVDPNLVRGLDYYNHTAFEIMSDAEGFGAITTLAGGGRYNGLVEDLGGPDAPGIG 305

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A+          +    +       + + A D+  +     +   L   G     D  G
Sbjct: 306 FAMSIERLLLALEMEKVVIGQSNNLEVYVVAMDESTKKKAFAVVRDLRVNGISADMDFTG 365

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ +Q   AD  G    +++G   +   KV +K   TG +++MS +E+ +    + S
Sbjct: 366 RKVKAQMKSADRKGAAFVIVIGETELESGKVALKEMATGEQQEMSFDEIASNLLKKKS 423


>gi|302389387|ref|YP_003825208.1| glycyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
 gi|302200015|gb|ADL07585.1| glycyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
          Length = 460

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/452 (15%), Positives = 148/452 (32%), Gaps = 48/452 (10%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADL 79
           R G + Q S    G+   + + PLG +   N+  I  ++    R   + +    L    +
Sbjct: 18  RRGFVFQGSEIYGGLANTWDYGPLGVELKQNIKRIWWKKVVYERDDVVGLDSAILMHPRV 77

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG    +   ++                E+  T    +  KS + L    +  Q+K 
Sbjct: 78  WEASGHVAGFNDALVDCKQC-KSRFRADHLIED--TLGIHAEGKSVQELTEIIHNNQIKC 134

Query: 140 RD-------ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH------ 186
                    + R    + ++ + +++D+ S       +       F + L          
Sbjct: 135 PVCGEVAWTDARVFNLMFKTHQGVVEDSSSVVYLRPETAQGIFVNFKNVLDTSRVKLPFG 194

Query: 187 --------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                   R  +        +          F+   +  E   +  +  MDF +      
Sbjct: 195 IAQIGKAFRNEITPGNFIFRTREFEQMELEFFVKPGEDMEWFEYWRQFTMDFFL--SLGV 252

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             + + L     +  + Y+  +            E   V+ R            +YS   
Sbjct: 253 KKENLRLRDHSPEELSHYSKATTDLEYNFPFGWGELWGVANRTDYDLSKH---IEYSGKS 309

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII--------WPDSVAPFKIS 350
              F   + +     +    +G  R + A++  ++  + +         +   VAP K +
Sbjct: 310 LTYFDQEEKRHIVPYVIEPSLGVDRAMLAILCDAYREEEVEGETRVVLGFHPDVAPIKCA 369

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +  +    +   +   KIY  L K    V +D+ G  IG ++   D +G P  + V    
Sbjct: 370 VFPLFKK-EPLEELARKIYHDLKKCYV-VEYDNTG-SIGKRYRRQDEIGTPYAITVDFDS 426

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + D KV I++R T  ++ + ++ + +Y   + 
Sbjct: 427 LDDHKVTIRNRDTMQQDRIGIDNIKDYLRDKL 458


>gi|298253424|ref|ZP_06977216.1| glycyl-tRNA synthetase [Gardnerella vaginalis 5-1]
 gi|297532819|gb|EFH71705.1| glycyl-tRNA synthetase [Gardnerella vaginalis 5-1]
          Length = 506

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/440 (16%), Positives = 140/440 (31%), Gaps = 42/440 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +  + +WV SG    +     E L
Sbjct: 33  WDYGPLGVALKDNIKREWWRYMVTTRGDVVGVDTSVILPSQVWVASGHVSVFNDPLIECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R+    +     E+    +  + +K                  E R    ++R+  
Sbjct: 93  NCHKRHRADKLEESYAEKHGDKMPENGLKDIACPDCGTRGNWT----EPRDFNMMLRTHL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +    +         G            I    
Sbjct: 149 GPVEDENSLHYLRPETAQGIFVDFKNVMTSARQKPPFGIANIGKSFRNEITPGNFIFRTR 208

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E       D             +++       E+ +     T D
Sbjct: 209 EFEQMEMEFFVEPGTDEAWHQYWIDTRVRWYVDLGVKPENLRMYEHPKEKLSHYSKRTVD 268

Query: 262 VHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  +  F      E + ++ R            K+S    + F  A G+ +   +     
Sbjct: 269 IEYKFGFQGSDWGELEGIANRTDYDLSAH---AKHSGEDLSYFNQATGEKYVPYVIEPAA 325

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++D                      +AP K +++ +    ++     +
Sbjct: 326 GLTRSLMAFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQ-AVAQ 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + A L +    + +D+ G  IG ++   D +G PL V V    + D  V I+ R T  +
Sbjct: 385 DLAADLRQHDWVIDYDEAGA-IGRRYRREDEIGTPLCVTVDFDTLEDHAVTIRERDTMQQ 443

Query: 427 EDMSLEEVINYASHRFSNNR 446
           E +SL++V +Y + R +  R
Sbjct: 444 ERVSLDKVADYVASRINEKR 463


>gi|269219508|ref|ZP_06163362.1| glycine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211087|gb|EEZ77427.1| glycine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 465

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/434 (14%), Positives = 130/434 (29%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    +   ++WV SG    +   +    
Sbjct: 36  WDYGPLGVELKENIKRQWWRHMVTSRDDVVGLDSSIILPREVWVASGHVGVFNDPLTECL 95

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + +        EE           S             + +  E R    ++++    
Sbjct: 96  SCHKR-FRVDQIQEEFAAKKGIEDPDSVELAEIACGNCGTRGQWTEPRDFNMMLKTYLGP 154

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG---- 204
           ++D          +       F + +    +         G            I      
Sbjct: 155 VEDESGLHYLRPETAQGIFVDFQNVMTSARKRPPFGIGQIGKSFRNEITPGNFIFRTREF 214

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V   T E       D           D +++       E+ +     T D+ 
Sbjct: 215 EQMEMEFFVKPGTDEEWHQYWIDERRNWYVGLGIDPENLRLYEHPQEKLSHYSKRTVDIE 274

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               F      +     GI     F   T  K+S    + F  A G+     +     G 
Sbjct: 275 YRFGFRGSDWGELE---GIANRTDFDLSTHTKHSGKDLSYFDQASGERWIPYVIEPAAGL 331

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       ++P K +++ + + D+       ++
Sbjct: 332 TRSLMAFLVEAYAEDEAPNAKGGVDKRVVLRLDPRLSPVKAAVLPL-SRDERLSPLAREL 390

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A L K   +V +DD G  +G ++   D +G P  + V    + D  V I+ R T  +  
Sbjct: 391 AAELRKNW-NVDFDDAGA-VGRRYRRQDEIGTPFCITVDFDSLEDRAVTIRDRDTMEQVR 448

Query: 429 MSLEEVINYASHRF 442
           + + +V    + + 
Sbjct: 449 LPIADVEGRLAAKL 462


>gi|255019144|ref|ZP_05291270.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL F2-515]
          Length = 182

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 77/183 (42%), Gaps = 2/183 (1%)

Query: 12  QENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R G   + 
Sbjct: 1   KEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLGYNHVY 59

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + + +L+  SG +D Y ++M      +++ ++  P +      I+++ I SYR LP 
Sbjct: 60  TPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNCPHHMMIYKNDIHSYRELPI 119

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
              ++ +  R E+      ++    +  +     + P+  K  + ++    L ++    +
Sbjct: 120 RIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQIKDEFKRVVELILEVYKDFDI 179

Query: 191 KSI 193
              
Sbjct: 180 TDY 182


>gi|253744932|gb|EET01065.1| Prolyl-tRNA synthetase [Giardia intestinalis ATCC 50581]
          Length = 534

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 146/443 (32%), Gaps = 91/443 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRL 96
           G   + P G    + +  +  EE  + G  +   PT+       + G     +  E   +
Sbjct: 62  GCVVFRPYGFFMENAIMKLCEEEYAKIGISQALFPTVIPESFLKKEGDHIKGFEAECFWV 121

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                   ++ +   PT E  +  +F   ++SY++LP   +Q    FR E +    ++R 
Sbjct: 122 EKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRV 181

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           RE                                               I  + +H    
Sbjct: 182 RE-----------------------------------------------IHWNEAHCCHA 194

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+   +Q+      +D     E       +      +   A Y+  SDV          
Sbjct: 195 TAEDAVSQLSDYWKVVDIIFSDELCFKGQKLRRVCWDKFAGADYSEVSDVVMP------- 247

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  R ++   I   G ++S      +     ++ +  +   GI + RV+A  +   
Sbjct: 248 -----CGRVLQTAGIHNLGQRFSSTFDILYANKANENVHPYLTCAGI-STRVLACALSIH 301

Query: 333 HDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLS-KVGCDVFWDDM 384
            D +G++ P  +AP  + +I I          D+   +   +I   L  K+G  V  DD 
Sbjct: 302 GDSRGLVLPPLIAPIHVVIIPIGCGKKNNQESDRQVMEKVNEIADTLKLKLGLRVSIDDD 361

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI--KHRLTGIREDMSLEEVI------ 435
             + +G +    +L G PL++ +G + +++++  +  +      ++ +S+ +++      
Sbjct: 362 FSKSMGDKLYYYELKGVPLRIEIGQRDLANNQCIVVPRDMGKDKKKAISITDILKVSSYA 421

Query: 436 ---------NYASHRFSNNRPVL 449
                    N         +  L
Sbjct: 422 TENHELVIENIIKDELDAYKARL 444


>gi|153952826|ref|YP_001393591.1| glycyl-tRNA synthetase [Clostridium kluyveri DSM 555]
 gi|219853491|ref|YP_002470613.1| hypothetical protein CKR_0148 [Clostridium kluyveri NBRC 12016]
 gi|254781876|sp|B9DY74|SYG_CLOK1 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|254781877|sp|A5N4L2|SYG_CLOK5 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|146345707|gb|EDK32243.1| GlyS [Clostridium kluyveri DSM 555]
 gi|219567215|dbj|BAH05199.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 463

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/441 (14%), Positives = 141/441 (31%), Gaps = 49/441 (11%)

Query: 40  YSWLPLGQKALDNV-----NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + P+G +  +NV        + E Q   G   +    L + ++WV SG   ++   ++
Sbjct: 34  WDYGPIGVELKNNVKKAWWQKFVHESQYNVG---IDCAILMNNEVWVASGHVGNFSDPLM 90

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              +   +        E + +          + N     Y            +      R
Sbjct: 91  DCKECKSRFRADKLVEEHMTSKGVEKASADGWNNEKLKEYIDDNNIVCPDCGKTNFTDIR 150

Query: 154 EFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           +F +       +T +     Y        +FV++  +      K     A+ G    +  
Sbjct: 151 QFNLMFKTFQGVTEDSKAEIYLRPETAQGIFVNFKNVQRTSRKKIPFGIAQIGKAFRNEI 210

Query: 208 H----------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                            EF     T        K++    +       ++I       E+
Sbjct: 211 TPGNFTFRTREFEQMELEFFCEPGTDLEWHNYWKEYCWKFLLKLGIKEENIRFRVHEKEE 270

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
            +    ATSD+     F    E   ++ R           +   +             + 
Sbjct: 271 LSHYSNATSDIEYLFPF-GWGELWGIADRTDYDLTQHQNRSGKDMTYLNPVTNE---RYI 326

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCR 362
                  +GA R V A +  ++D +          + +  ++APFK++++ +        
Sbjct: 327 PYCIEPSVGADRAVLAFLVDAYDEEELEGGDVRTVMHFHPAIAPFKVAILPLSKK---LS 383

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +    +Y  L K   +V +DD G  IG ++   D +G P  + +    + +  V I+ R 
Sbjct: 384 EKALDVYNMLRK-DFNVDYDDAG-SIGKRYRREDEIGTPYCITIDFDTMDNDTVTIRDRD 441

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +  + ++E+ ++   +  
Sbjct: 442 TMKQFRVKIDELKDFIKEKIQ 462


>gi|255323744|ref|ZP_05364872.1| glycine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
 gi|255299234|gb|EET78523.1| glycine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
          Length = 459

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/435 (13%), Positives = 133/435 (30%), Gaps = 42/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--R 95
           + + PLG +  +N+          +R   + +    +Q   +WV SG  + +   ++  R
Sbjct: 32  WDYGPLGVELKENIKRQWWRHMVQSRADVVGVDTSVIQPRQVWVSSGHVEVFSDPLVESR 91

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  +A      +EE       + +    +              E +   G++++   
Sbjct: 92  HTGKRYRADDLIEAYEEKHGHEPENGLADINDPETGQPGDWT----EPKAFSGLLKTFLG 147

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESGP 201
            + D          +       F + +                  R  +        +  
Sbjct: 148 PVDDEQGLHYLRPETAQGIFVNFKNVMTSSRMKPPFGIANIGKSFRNEITPGNFIFRTRE 207

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                   F+   +  E   +   D  ++ +       +++       E+ +     T D
Sbjct: 208 FEQMEMEFFVKPGEDEEWHQYWIDDRYNWYV-DLGIKEENLRLYEHPKEKLSHYSKRTVD 266

Query: 262 VHNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           V     F      E + V+ R      +   G   S    + +  A+ +     +     
Sbjct: 267 VEYAFGFKGSKWGELEGVANRTDYDLSVHAKG---SGEDLSYYDQANDERWIPYVIEPAA 323

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVA------PFKISLINIK------AHDQVCRDACEK 367
           G  R + A +  ++D +                    L  IK      +  +   +   K
Sbjct: 324 GLGRSMMAFLVDAYDEEEAPNAKGGTDKRVVLRLDRRLAPIKVAVLPLSKKEELSEPARK 383

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  +L     +V +D  G  IG ++   D +G P  V      + D  V ++ R T  +E
Sbjct: 384 LADKLRAHW-NVDFDVSGA-IGRRYRRQDEIGTPFCVTFDFDTLEDDAVTVRERDTMEQE 441

Query: 428 DMSLEEVINYASHRF 442
            + L+++  Y + R 
Sbjct: 442 RVKLDDLEAYLAARL 456


>gi|29829188|ref|NP_823822.1| prolyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
 gi|81838431|sp|Q82JV8|SYP2_STRAW RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|29606294|dbj|BAC70357.1| putative prolyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
          Length = 471

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/388 (14%), Positives = 114/388 (29%), Gaps = 59/388 (15%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +      TG      P L     L  E+   + +  E+  +     K
Sbjct: 41  PYGYGLWERMQQEMDARIKETGTQNAYFPLLIPQSYLTKEADHVEGFAPELAVVTHGGGK 100

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 101 ELEEPAVVRP-------------------------------------------------- 110

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +       ++K   SY  +   +   +  +R E  P     + EF+     G T   
Sbjct: 111 --TSEMIINDYFSKWVQSYRDLPLLINQWANVVRWELRPRLFLRTTEFL--WQEGHTAHA 166

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             ++  DF        + D +     ++       A           +L E      + +
Sbjct: 167 TYEEARDFAAHIHRHVYADFMENVLAMDVVLGRKTAKERFAGAVNTLTL-EGMMGDGKAL 225

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++G     G  ++      +   +GK   V   S+G    R++ A++    D  G+  P 
Sbjct: 226 QMGTSHELGQNFARAFHTQYLSKEGKQELVWQTSWGS-TTRMIGALVMMHGDDNGLRVPP 284

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFP 401
            +A  ++ ++ I   D+       +   RL   G  V  DD      G +    +L G P
Sbjct: 285 RLAQTQVVVLAI-KGDEAVLAKVRETGDRLKAAGLRVQVDDRTDVPFGRRAVDWELKGVP 343

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           ++V VG + + +    +  R+ G +E +
Sbjct: 344 VRVEVGPRDLENGTAMVARRIPGGKEPV 371


>gi|227488416|ref|ZP_03918732.1| glycyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227543028|ref|ZP_03973077.1| glycyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091630|gb|EEI26942.1| glycyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227181250|gb|EEI62222.1| glycyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 461

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 67/437 (15%), Positives = 125/437 (28%), Gaps = 46/437 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + P G +  +N+           R   + +    +   + WV SG  + +     E L
Sbjct: 34  WDYGPYGVELKENLKRQWWRTMITSRPDTVGIDSSVILPRETWVASGHLEVFHDPLVESL 93

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R     +     E+                             E R   G++++  
Sbjct: 94  YTHKRYRADHLLEAYEEKHGHPAPNGLADVNDPETGQPGNWT-----EPRDFSGMLKTFL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG-- 204
             + D          +       F + L              G            I    
Sbjct: 149 GPVDDEEGLHYLRPETAQGIFVNFKNVLTTSRAKLPFGIGNIGKSFRNEITPGNFIFRTR 208

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V     E       D           D +++       E+ +     T D
Sbjct: 209 EFEQMEMEFFVKPGEDEKWHQYWIDTRHKWYTDLGIDPENLRLYEHPKEKLSHYSKRTVD 268

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     F      +     G+     F  GT  K+S      F  A G+     +     
Sbjct: 269 IEYAFGFQGSTWGELE---GVANRTDFDLGTHMKHSGEDLRYFDQASGERFIPYVIEPAA 325

Query: 320 GAMRVVAAVIESSH-------------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++                 +     +AP K++++ +   D       E
Sbjct: 326 GLGRAMMAFLVDAYAEEEVPNAKGGTDTRTVLRLDPRLAPVKVAVLPLSKKD-TLTPLAE 384

Query: 367 KIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +I   L   G  +V +D  G  IG ++   D +G P  V V    + D  V ++ R T  
Sbjct: 385 EIAQTLR--GYWNVDYDTSGA-IGRRYRRQDEIGTPYCVTVDFDSLEDHAVTVRDRDTMQ 441

Query: 426 REDMSLEEVINYASHRF 442
           +E + ++E+  Y +   
Sbjct: 442 QERVKIDELEGYLAQHL 458


>gi|332967807|gb|EGK06908.1| threonine--tRNA ligase [Desmospora sp. 8437]
          Length = 295

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 118/316 (37%), Gaps = 28/316 (8%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
               +L + T +  +  +G+  WLP G      +   I +++ R G   +  P L S +L
Sbjct: 1   KLGKELKIFT-LSQEVGQGLPLWLPNGATIRRIIERYIIDKEERLGYQHVYTPHLASVEL 59

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           +  SG +D Y ++M      +++ ++  P +      I+++ +KSYRNLP    ++ +  
Sbjct: 60  YKISGHWDHYHEDMYPPMKMDNEELVLRPMNCPHHMMIYKNDLKSYRNLPVRIAELGMMH 119

Query: 140 RDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           R E+     G+ R R   + DA+ F    +     + ++      ++   G+K    R  
Sbjct: 120 RHEMSGALSGLQRVRAMTLNDAHIFCRPDQIKSE-FIRVVQLIEEVYRDFGIKDFWYRLS 178

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                                +   + +  +          D++       E   A Y  
Sbjct: 179 YRDPEDKK-------------KYVQNDEMWETSQRMLREAMDEMGVDYVEAEGEAAFYGP 225

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
             DV   ++  +L +++ +S   ++      FG          + G DG+ H   +   G
Sbjct: 226 KLDV---QVQTALGKDETLSTVQMDFHLPNQFG--------LEYIGEDGQPHRPVVIHRG 274

Query: 319 I-GAMRVVAAVIESSH 333
           I G M    A +   +
Sbjct: 275 IVGTMERFVAFLLEYY 290


>gi|167629917|ref|YP_001680416.1| histidyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
 gi|229558684|sp|B0TF88|SYH_HELMI RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|167592657|gb|ABZ84405.1| histidyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
          Length = 425

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 127/417 (30%), Gaps = 20/417 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +   IR      G  E+  P  + ++++        D   KE     DR 
Sbjct: 13  LPGQSRHWQTLEDTIRRLCREYGYEEIRTPIFEHSEVFHRGVGDTTDIVQKETYDFQDRG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            + +   P            H     +LP   Y     FR         +R R+F     
Sbjct: 73  GRDLTLRPEGTAPTVRALLEHKLYAGSLPVKLYYTGPMFRFGRPQT---VRLRQFHQFGI 129

Query: 161 YSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTG 217
             F  + P             Y R+  +     +         P   +  H+F+     G
Sbjct: 130 EVFGASGPRVDAEVIAMAMDFYSRLGLKNLELLLNSIGCPACRPAYREALHQFLRPKG-G 188

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISL--------NSIVEQWTAPYAATSDVHNEKLFD 269
           E    C K     P+   +        L        N + +     +A   ++ +     
Sbjct: 189 ELCEDCKKRMDRNPLRVLDCKNQRCQELSQGAPTTVNHLCDDCANHFADVKELLDAAGVA 248

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV- 328
              +++ V  RG++      F        + +  G  G+  ++     G     +   + 
Sbjct: 249 YSLDDRLV--RGLDYYTKTAFEIVSRDIGAQSSIGGGGRYDHLVEALGGPPVPGIGFGLG 306

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E                 +   + I    +  +     +  +L + G  V  D +   +
Sbjct: 307 LERVLLTMKNQGLLDADSREQRDLFIALAGEGTQPVAFGLAQKLRQRGVAVEMDYLERSL 366

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +Q   AD    P  VIVG   + + K+ ++   TG ++ + L E   Y  + F+N 
Sbjct: 367 KAQMKTADRFRVPYVVIVGEGELKEGKLTLRTMATGEQQQIPLGEAAEYLDNLFANR 423


>gi|294496278|ref|YP_003542771.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase
           [Methanohalophilus mahii DSM 5219]
 gi|292667277|gb|ADE37126.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase
           [Methanohalophilus mahii DSM 5219]
          Length = 631

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/418 (15%), Positives = 132/418 (31%), Gaps = 51/418 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   + P G+     +   + +  +R GA+E+  P +   +        D +       
Sbjct: 230 SGNMRYYPKGRLIKSLLERYVLDSSSREGAMEVETPLMYDMNHPTLKKYLDRFPAR-QYS 288

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ-IQLKFRDELRPR-FGVMRSRE 154
            + + + M            +      S+ NLP    +  +  FR E R    G+ R R 
Sbjct: 289 IESDKRHMFLRFAACFGQFLMSHDMTISHHNLPMKMVELTRYSFRKEQRGELVGLRRLRA 348

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++     + +   + + +   + +   +G+           +  D   E     
Sbjct: 349 FTMPDMHTMCGDMDQAVEQFGRQYQMSIDVLKDVGIDVSDYEVA-IRLTRDFYEE----- 402

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                                 T     ++   +VE W   +            D+L + 
Sbjct: 403 -----------------NKDFITALAKKVNKPVLVEMWEKRFFYFVLKFEFNFVDALKKA 445

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM-GSYGIGAMRVVAAVIESSH 333
             +S   I+V        + +      +    G+     +      GA+      +    
Sbjct: 446 SALSTVQIDV--------ENAERYDIKYIDQAGEAKRPVVLHCSPSGAIERCIYSLLEKA 497

Query: 334 DGK-----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
             K       + P  ++P ++ +I I    +   +  E++ +R+    C V  DD  E +
Sbjct: 498 SMKAEGGEVPMLPVWLSPTQVRVIPIA---ERHMEFAEEVASRIQ---CRVDIDDREETV 551

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-----REDMSLEEVINYASHR 441
           G +   A     P  V+VG +     KV +  R         + +MS++E+ +     
Sbjct: 552 GKKIRNAGQEWVPYVVVVGDREAESGKVNVTVREESKPKKPSKVEMSVDELNSRILKE 609


>gi|227504561|ref|ZP_03934610.1| glycyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
 gi|227198881|gb|EEI78929.1| glycyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
          Length = 459

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/435 (14%), Positives = 136/435 (31%), Gaps = 42/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML--R 95
           + + PLG +  +N+          +R   + +    +Q   +WV SG  + +   ++  R
Sbjct: 32  WDYGPLGVELKENIKRQWWRHMVQSREDVVGVDTSVIQPRQVWVSSGHVEVFTDPLVESR 91

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  +A      +EE       + +    +              E +   G++++   
Sbjct: 92  HTGKRYRADHLLEAYEEKHGHEPANGLADINDPETGQPGDWT----EPKAFSGLLKTFLG 147

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG--- 204
            + D          +       F + +              G            I     
Sbjct: 148 PVDDEQGLHYLRPETAQGIFVNFKNVMTSARMKPPFGIANIGKSFRNEITPGNFIFRTRE 207

Query: 205 --DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
              +  EF V     E       D             +++       E+ +     T DV
Sbjct: 208 FEQMEMEFFVKPGEDEQWHQYWIDDRYNWYVDLGIKEENLRLYEHPKEKLSHYSKRTVDV 267

Query: 263 HNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                F      E + V+ R      +   G   S    + +     +     +     G
Sbjct: 268 EYAFGFTGSKWGELEGVANRTDYDLSVHAKG---SGEDLSYYDQTTEERWVPYVIEPAAG 324

Query: 321 AMRVVAAVIESSHDGKGIIWPD-------------SVAPFKISLINIKAHDQVCRDACEK 367
             R + A +  ++D + +                  +AP K++++ +   +++      +
Sbjct: 325 LGRSMMAFLVDAYDEEEVPNSKGGTDKRVVLRLDRRLAPVKVAVLPLSKKEELANP-ARE 383

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A+L  +  +V +D  G  IG ++   D +G P  V      + D  V ++ R T  +E
Sbjct: 384 LAAKLR-MNWNVDYDTSGA-IGRRYRRQDEIGTPFCVTYDFDSLEDGAVTVRERDTMEQE 441

Query: 428 DMSLEEVINYASHRF 442
            + ++E+  Y + R 
Sbjct: 442 RVKIDELEAYLAARL 456


>gi|313837260|gb|EFS74974.1| glycyl-tRNA synthetase [Propionibacterium acnes HL037PA2]
 gi|314972031|gb|EFT16129.1| glycyl-tRNA synthetase [Propionibacterium acnes HL037PA3]
          Length = 472

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 67/434 (15%), Positives = 133/434 (30%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P G +  +N+           R   + +    +   ++WV SG    +   +    
Sbjct: 43  WDYGPFGVELKENIKRQWWRCMVTYRDDVVGLDSSVILPREVWVASGHVGVFNDPLTECL 102

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + + M      E            S             K +  E R    ++++    
Sbjct: 103 SCHKR-MRADHLQEGYAAKHGMDDPDSVPLEEINCPNCGNKGQWTEPRDFNMMLKTYLGP 161

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG---- 204
           ++D          +       F + L    +         G            I      
Sbjct: 162 VEDEAGLHYLRPETAQGIFVNFQNVLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREF 221

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V   T E       D           + D++       E+ +     T D+ 
Sbjct: 222 EQMEMEFFVEPGTDEEWHQYWIDERTNWYTDLGINADNLRHYEHPKEKLSHYSKRTVDIE 281

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F      +     GI     F  GT  K+S    + F  A  K +   +     G 
Sbjct: 282 YKFGFAGSDWGELE---GIANRTDFDLGTHTKHSGKDLSYFDQAQNKRYLPYVIEPAAGL 338

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       +AP K +++ +  +          +
Sbjct: 339 TRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRLAPVKAAVLPLSRNSD-LSPKARDL 397

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A+L +   +V +DD    IG ++   D +G P  V V    + D+ V ++ R T  +E 
Sbjct: 398 AAQLRQWW-NVDFDDAQA-IGKRYRRQDEIGTPFCVTVDFDTLDDNAVTVRDRDTMSQER 455

Query: 429 MSLEEVINYASHRF 442
           ++L++V +Y + R 
Sbjct: 456 IALDKVEDYLAERL 469


>gi|294933724|ref|XP_002780831.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239890922|gb|EER12626.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 296

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 75/184 (40%), Gaps = 19/184 (10%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            + R ++     + GT ++      F+  +G+  + +  S+G    R +  +I    D K
Sbjct: 47  CNGRAVQGATSHFLGTHFAKMFGIEFEDRNGEKKFAEQTSWGF-TTRSIGVMIMEHGDDK 105

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR-----------DACEKIYARLSKVGCDVFWDDMG 385
           G++ P  VA  ++ ++ I       +           + C+ +Y  L+  G  V  DD  
Sbjct: 106 GLVLPPRVAEVQVVIVPIPPKGAGAQWSTAELKTMIGEKCKSLYEDLNANGVRVVLDDRD 165

Query: 386 EQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR------EDMSLEEVINYA 438
           ++  G +F   +L G PL++ VG+K +    V    R TG +        + ++E +   
Sbjct: 166 DKTPGYKFNHWELKGVPLRIEVGAKDLEKGVVTFVRRNTGKKSQEAEHSSVKVKEALESI 225

Query: 439 SHRF 442
               
Sbjct: 226 QSEL 229


>gi|15827816|ref|NP_302079.1| prolyl-tRNA synthetase [Mycobacterium leprae TN]
 gi|221230293|ref|YP_002503709.1| prolyl-tRNA synthetase [Mycobacterium leprae Br4923]
 gi|13633969|sp|Q9Z5I7|SYP_MYCLE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511607|sp|B8ZRT2|SYP_MYCLB RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|13093368|emb|CAC30504.1| prolyl tRNA synthetase [Mycobacterium leprae]
 gi|219933400|emb|CAR71648.1| prolyl tRNA synthetase [Mycobacterium leprae Br4923]
          Length = 480

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/428 (12%), Positives = 125/428 (29%), Gaps = 63/428 (14%)

Query: 28  RTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGR 85
           + G+I +  +KG     P G +  + +   +  +    G      P L   + +  E+  
Sbjct: 25  KAGLIDRGPAKGTMVIRPYGYRIWELLQDELDSKIKELGHENAYFPMLIPENYFNREAEH 84

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            + +  E+  +     K +                   S   +     +     RD    
Sbjct: 85  VEGFHPELAVVTHAGGKELSEPLVIRPT----------SETVIGDMMAKWITSHRD---- 130

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
                                P       N +            ++ +     S  I   
Sbjct: 131 --------------------LPLRLNQWSNVVRWELRPRMLLRTIEFLWQEGHSAHIEKS 170

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                  L +T       +    D            +    +  E++             
Sbjct: 171 D-----ALRETLFALDIYTTLARDMAA------IPIVSGEKTAGERFAG----------- 208

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            L     E      + ++     Y G  ++   +  +  A+ +  +V   S+G+ + R++
Sbjct: 209 ALNTYTIEAMMRDGKALQSATTHYLGDNFARAFNIRYTTAEEQQAFVHTTSFGL-STRMI 267

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            A++    D KG++ P  VAP+++ ++ I           A   +  RL   G     D 
Sbjct: 268 GAIVMVHGDDKGLVLPPQVAPYQVVIVPITTGNKASEVGHAAADLARRLQAAGVRTHVDA 327

Query: 384 MGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDMSLEEVINYASHR 441
             +   G ++   +L G P+++ +G + +     V ++      ++ +++          
Sbjct: 328 RPQLTPGWKYNEWELRGVPIRLELGPRDLEAGTTVMVRRIGEKAKQPIAIAAAPTELPGI 387

Query: 442 FSNNRPVL 449
               +  L
Sbjct: 388 LEEFQRTL 395


>gi|291543338|emb|CBL16447.1| glycyl-tRNA synthetase [Ruminococcus sp. 18P13]
          Length = 459

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/438 (13%), Positives = 134/438 (30%), Gaps = 48/438 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+    R++  +     +      L +   WV SG    +   ++   
Sbjct: 35  WDYGPLGVELKNNIKQAWRKKFVQENKYNVGLDSAILMNPQTWVASGHIGGFSDPLMDCK 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +   +        +   T+        + N     Y  + +       +      R+F +
Sbjct: 95  ECKTRHRADNLIEDFDGTNPAG-----WSNEQMMNYIKEKEIPCPSCGKKNFTDIRQFNL 149

Query: 158 KDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRAESG 200
                  +T +     Y                             ++G           
Sbjct: 150 MFKTFQGVTEDSKSELYLRPETAQGIFVNFANIQRTTRKKIPFGVAQVGKSFRNEITPGN 209

Query: 201 PIGGDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            I      E     F     T        + F    + S +   +++   +   E+    
Sbjct: 210 FIFRVREFEQMELEFFCKPGTDLEWFDYWRSFCKNWLLSLHIKEENLRLRDHDPEEL-CF 268

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y+  +            E   V+ R     +      K S      F     + +   + 
Sbjct: 269 YSKATTDFEYLFPFGWGELWGVADRTDYDLNQH---IKTSGKQLDYFDPETNERYVPYVI 325

Query: 316 SYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACE 366
              +G  R+  A++  ++D +          + +  ++APFK +++ +        +   
Sbjct: 326 EPSLGVERLFLALLTEAYDEEEIAPGDVRTVMHFHPALAPFKAAVLPLSKK---LSEKAT 382

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS-DSKVEIKHRLTGI 425
           ++Y  L      V +D+ G  IG ++   D +G P  +      +  D+ V I+ R T  
Sbjct: 383 EVYEML-AKHFPVDYDESG-SIGKRYRRQDEIGTPFCITYDFDTLEKDNCVTIRDRDTME 440

Query: 426 REDMSLEEVINYASHRFS 443
           +E +++ +++ Y   +  
Sbjct: 441 QERVAISDLVAYLEKKIE 458


>gi|4455680|emb|CAB36573.1| putative prolyl tRNA synthetase [Mycobacterium leprae]
          Length = 473

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/428 (12%), Positives = 125/428 (29%), Gaps = 63/428 (14%)

Query: 28  RTGMIHQ-HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGR 85
           + G+I +  +KG     P G +  + +   +  +    G      P L   + +  E+  
Sbjct: 18  KAGLIDRGPAKGTMVIRPYGYRIWELLQDELDSKIKELGHENAYFPMLIPENYFNREAEH 77

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            + +  E+  +     K +                   S   +     +     RD    
Sbjct: 78  VEGFHPELAVVTHAGGKELSEPLVIRPT----------SETVIGDMMAKWITSHRD---- 123

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
                                P       N +            ++ +     S  I   
Sbjct: 124 --------------------LPLRLNQWSNVVRWELRPRMLLRTIEFLWQEGHSAHIEKS 163

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                  L +T       +    D            +    +  E++             
Sbjct: 164 D-----ALRETLFALDIYTTLARDMAA------IPIVSGEKTAGERFAG----------- 201

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            L     E      + ++     Y G  ++   +  +  A+ +  +V   S+G+ + R++
Sbjct: 202 ALNTYTIEAMMRDGKALQSATTHYLGDNFARAFNIRYTTAEEQQAFVHTTSFGL-STRMI 260

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            A++    D KG++ P  VAP+++ ++ I           A   +  RL   G     D 
Sbjct: 261 GAIVMVHGDDKGLVLPPQVAPYQVVIVPITTGNKASEVGHAAADLARRLQAAGVRTHVDA 320

Query: 384 MGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDMSLEEVINYASHR 441
             +   G ++   +L G P+++ +G + +     V ++      ++ +++          
Sbjct: 321 RPQLTPGWKYNEWELRGVPIRLELGPRDLEAGTTVMVRRIGEKAKQPIAIAAAPTELPGI 380

Query: 442 FSNNRPVL 449
               +  L
Sbjct: 381 LEEFQRTL 388


>gi|163846883|ref|YP_001634927.1| prolyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222524704|ref|YP_002569175.1| prolyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
 gi|259511578|sp|A9W9Q2|SYP_CHLAA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511583|sp|B9LC55|SYP_CHLSY RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|163668172|gb|ABY34538.1| prolyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222448583|gb|ACM52849.1| prolyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
          Length = 480

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/408 (14%), Positives = 117/408 (28%), Gaps = 65/408 (15%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKA 103
            G    + +   + +    TG   +  P L     +  E+   + +  E+  +       
Sbjct: 42  HGWAIWELMQRALDDRIKATGHANVQFPLLIPKSFIMKEAEHVEGFAPEVAEVT------ 95

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
                                                             E L +     
Sbjct: 96  ----------------------------------------------RAGGEELAEPYIIR 109

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
             +     + Y+K   SY  +       +  MR E        + EF      G T    
Sbjct: 110 PTSETIIGYFYSKWIRSYRDLPLLYNQWANVMRWEMRTRPFLRTAEFW--WQEGHTAHAT 167

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
             +  +  +   +  + D +     V                 L     E      R ++
Sbjct: 168 EAEAEEETLRILHDVYADFVEKEMAVPVIRGLKTEKEKFPG-ALRSYCIEAMMQDGRALQ 226

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
            G     G  ++     TF   +    Y    S+G+ + R++ A+I +  D +G++ P  
Sbjct: 227 AGTSHNLGQNFARAFDITFTDQNNTIQYAWTTSWGV-STRLIGALIMTHSDDEGLVLPPR 285

Query: 344 VAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLG 399
           +AP ++ ++ I  +D+       A E++ A           DD      G +F   +L G
Sbjct: 286 LAPIQVVVVPIYKNDEERSLVMAAVEQMTAAWKGR-LRFKVDDRDNYSPGYKFNEWELKG 344

Query: 400 FPLQVIVGSKFVSDSKVEIKHRL---TGIREDMSLEEVINYASHRFSN 444
            P+++ VG K V+   V +  R       +  +    +        + 
Sbjct: 345 VPVRIEVGPKDVAKETVALARRDIPGKAGKSFVPQAGLTERIEALLNE 392


>gi|115388031|ref|XP_001211521.1| hypothetical protein ATEG_02343 [Aspergillus terreus NIH2624]
 gi|114195605|gb|EAU37305.1| hypothetical protein ATEG_02343 [Aspergillus terreus NIH2624]
          Length = 592

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 69/431 (16%), Positives = 130/431 (30%), Gaps = 83/431 (19%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
            G +   P      + +         + G    S P   S D+   E    + +  E+  
Sbjct: 108 SGCFILKPASYSIWEEIQQWFNTHIKKIGVKNCSFPLFVSEDVLQREKDHIEGFAAEVAW 167

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        +K +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 168 VTHAGSTPLEKKIAIRPTSETVMYPYYSKWIRSHRDLPLRLNQWNSVVRWEFKHPQPFLR 227

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           +REFL ++                                                H   
Sbjct: 228 TREFLWQEG-----------------------------------------------HTAH 240

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
           +  D    +V    D     I  E      +    +  E++    Y  T + +       
Sbjct: 241 LTQDAAHEEVMYILDLY-AKIYEELLAVPVVKGQKTEKEKFAGGLYTTTVEGYIPA---- 295

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG------ADGKDHYVQMGSYGIGAMRV 324
                  + RGI+       G  +S   + T +             +V   S+G+ + R 
Sbjct: 296 -------TGRGIQGATSHGLGQNFSKMFNITVEDPSAKGDEKKPPIHVWQNSWGL-STRT 347

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------LSKVGC 377
           +  ++    D  G++ P  VA  ++ ++ +    +   +  EK+YA        L+  G 
Sbjct: 348 LGVMVMIHSDNHGLVLPPRVAETQVVIVPVGITAKTSDEEREKLYAEIDGLTTVLTAAGV 407

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMSLEE 433
               D   G   G +F   +L G PL++  G    +   V    R       +  + + +
Sbjct: 408 RATSDMREGYSPGWKFNDWELRGVPLRLEFGPGESAGHFVTAARRDIPGREGKSTIQISD 467

Query: 434 VINYASHRFSN 444
           +          
Sbjct: 468 LSTAVPALLET 478


>gi|260578228|ref|ZP_05846146.1| glycine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
 gi|258603643|gb|EEW16902.1| glycine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 484

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/438 (13%), Positives = 128/438 (29%), Gaps = 46/438 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +R   + +    +    +W  SG  + +     E L
Sbjct: 57  WDYGPLGVELKENIKRQWWRHMVTSRRDVVGLDSSVILPKRVWEVSGHVEVFTDPLVESL 116

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R     +     E+                             E +   G++++  
Sbjct: 117 HTHKRYRADHLLEAYEEKHGHPPANGLADINDPETGQPGAWT-----EPKAFSGLLKTFL 171

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESG 200
             + D          +       F + +                  R  +        + 
Sbjct: 172 GPVDDKEGLHYLRPETAQGIFTNFKNVMTTSRQKPPFGIAQVGKSFRNEITPGNFIFRTR 231

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                    F+   +  E   +   D   + I       +++       E+ +     T 
Sbjct: 232 EFEQMEMEFFVKPGEDEEWHQYWIDDRHQWYI-DLGIKPENLRLYEHPKEKLSHYSKRTV 290

Query: 261 DVHNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           DV     F+     E + V+ R      +   G   S    + +     +          
Sbjct: 291 DVEYAFHFNGSKWGELEGVANRTDYDLRVHSEG---SGEDLSFYDQTTEERWIPYTIEPA 347

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFK------ISLINIK------AHDQVCRDACE 366
            G  R + A +  ++  + +         +        L  +K      +  +      E
Sbjct: 348 AGLGRAMMAFLVDAYTEEEVPNAKGGTDTRTVLKLDRRLAPVKIAVLPLSKKETLTPTAE 407

Query: 367 KIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           KI  +L   G  +V +D  G  IG ++   D +G P  V V    + D+ V ++ R T  
Sbjct: 408 KIAGQLR--GFWNVDYDTSGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAVTVRERDTME 464

Query: 426 REDMSLEEVINYASHRFS 443
           +E + +E++ +Y + R +
Sbjct: 465 QERIKIEDLQSYFAERLA 482


>gi|159110155|ref|XP_001705339.1| Prolyl-tRNA synthetase [Giardia lamblia ATCC 50803]
 gi|157433422|gb|EDO77665.1| Prolyl-tRNA synthetase [Giardia lamblia ATCC 50803]
          Length = 542

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 140/443 (31%), Gaps = 91/443 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G   + P G    + +  +  EE  + G  ++  PT+     L  ES     +  E   +
Sbjct: 70  GCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWV 129

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                   ++ +   PT E  +  +F   ++SY++LP   +Q    FR E +    ++R 
Sbjct: 130 EKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRV 189

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           RE                                               I  + +H    
Sbjct: 190 RE-----------------------------------------------IHWNEAHCCHA 202

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+   +Q+      +D     E       +          A Y+  SDV          
Sbjct: 203 TAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDV-----VMPCG 257

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  R ++   I   G ++S      +     +  +  +   GI + RV+A  +   
Sbjct: 258 -------RVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGI-STRVLACALSIH 309

Query: 333 HDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKV-GCDVFWDDM 384
            D  G++ P  +AP  + +I I          DQ       +I   L    G  V  DD 
Sbjct: 310 GDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDD 369

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI--REDMSLEEVI------ 435
             + +G +    +L G PL++ VG + +++ +  +  R  G   +  + + EV+      
Sbjct: 370 FSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEVMKVSSHT 429

Query: 436 ---------NYASHRFSNNRPVL 449
                    N         +  L
Sbjct: 430 TENHELVVKNVIKDELDAYKARL 452


>gi|48478186|ref|YP_023892.1| glycyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|48430834|gb|AAT43699.1| glycyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 474

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/468 (14%), Positives = 145/468 (30%), Gaps = 82/468 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK---EM 93
            G+Y + PLG    DN+    ++     GAI +  P +   +++  SG    +     E 
Sbjct: 28  SGLYDYGPLGVLLKDNIINKWKKAYLDEGAIFIDTPNITPGEVFDASGHLSRFSDIAAEC 87

Query: 94  LRLADRNDKA-------------------------------------------------- 103
                +                                                      
Sbjct: 88  DSCKSKFKIENVLAFNKIEIIPKSVDEALSISEKNNLKCPVCGNIIKKIYNYNLMFRLEN 147

Query: 104 ---MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
               +   T + +  +           LP    Q+   FR+E+ PR  ++R REF   + 
Sbjct: 148 SNFYLRPETAQGIFVNFKLLSNYYRGKLPMAVAQLGKGFRNEISPRQSLIRLREFSQGEV 207

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F                  L+    +  K+    A    I  +++  + +L       
Sbjct: 208 EVFFDPENEYWKDLFDYDEITLKPNTGVEYKTSIKNAFENRIIDNIAMAYFILKTQKILN 267

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
               K              +D I          A YA+     +    ++  ++  V   
Sbjct: 268 DIGFK--------------NDNIRFRQHDPDERAHYAS-----DSWDAEARIDDDWVEIV 308

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           GI     +      +          + +D    +     G  R+  A++  S+      +
Sbjct: 309 GIANRTNYDLKNHDAKSSERMSLKINNRDVIPNVIEPSYGIDRITLALMVQSYHKNEKGY 368

Query: 341 P-----DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +AP+  +++ +    +       +IY  +  +   V++D+ G  IG +++  
Sbjct: 369 NVLSFKPEMAPYHFAVLPL-IKKENFIKKSMEIYNMIMSIDSYVYYDETG-SIGKRYSRQ 426

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D +G P  + +  + + +  V ++ R TG +E +  +++++Y S +  
Sbjct: 427 DEIGTPFCITIDYETLENDSVTVRFRDTGNQERIDKKDLLDYLSGKLK 474


>gi|38234279|ref|NP_940046.1| glycyl-tRNA synthetase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200542|emb|CAE50237.1| glycyl-tRNA synthetase [Corynebacterium diphtheriae]
          Length = 461

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/435 (14%), Positives = 140/435 (32%), Gaps = 42/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           + + PLG +  +N+         Q R   + +    +    +WV SG   ++   ++   
Sbjct: 34  WDYGPLGMELKENIKKQWWRTFVQARADVVGLDSSIILPRQVWVASGHVATFTDPLVESL 93

Query: 97  -ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  +A      +E        + +    +              E +   G+M++   
Sbjct: 94  HTHKRYRADHLIEAYEAKHGHAPENGLADVPDPETGQPGNWT----EPQMFSGLMKTYLG 149

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGGDLS 207
            + +          +       F + +            ++G            I     
Sbjct: 150 PVDNEQGLHYLRPETAQGIFVNFKNVMTTARMKPPFGIAQVGKSFRNEITPGNFIFRTRE 209

Query: 208 HEFI-----VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
            E +     V  +  + +     D           + D++   +   E        T D+
Sbjct: 210 FEQMEIEYFVPEELADQKFNEWVDDCWNWFVDLGINPDNMRRFDVPEEDRAHYSKGTIDM 269

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIG 320
             +  F   P  + +   G+     +  G   K S    + F    G+ +   +     G
Sbjct: 270 EYKFGFQGNPWGELM---GVANRTDYDLGCHIKESGEDLSYFDQTTGERYVPWVIEPSFG 326

Query: 321 AMRVVAAVIESSH-------------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
             R + A +  ++                 +     +AP K++++ +   D       E+
Sbjct: 327 LTRALMAFLVDAYCEDEAPNAKGGVDKRVVLKLDPRLAPVKVAVLPLSKKD-TLTPVAEE 385

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A+L +   +V +D  G  IG ++   D +G P  V V    + D+ V ++ R T  +E
Sbjct: 386 VAAKLRQFW-NVDYDTSGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAVTVRERDTMTQE 443

Query: 428 DMSLEEVINYASHRF 442
            ++L ++ +Y + R 
Sbjct: 444 RVALADLQSYLAARL 458


>gi|255918003|pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
           Prolyl-Adenylate
 gi|255918004|pdb|3IAL|B Chain B, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
           Prolyl-Adenylate
          Length = 518

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 140/443 (31%), Gaps = 91/443 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G   + P G    + +  +  EE  + G  ++  PT+     L  ES     +  E   +
Sbjct: 46  GCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWV 105

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                   ++ +   PT E  +  +F   ++SY++LP   +Q    FR E +    ++R 
Sbjct: 106 EKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRV 165

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           RE                                               I  + +H    
Sbjct: 166 RE-----------------------------------------------IHWNEAHCCHA 178

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+   +Q+      +D     E       +          A Y+  SDV          
Sbjct: 179 TAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDV-----VMPCG 233

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  R ++   I   G ++S      +     +  +  +   GI + RV+A  +   
Sbjct: 234 -------RVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGI-STRVLACALSIH 285

Query: 333 HDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKV-GCDVFWDDM 384
            D  G++ P  +AP  + +I I          DQ       +I   L    G  V  DD 
Sbjct: 286 GDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDD 345

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI--REDMSLEEVI------ 435
             + +G +    +L G PL++ VG + +++ +  +  R  G   +  + + EV+      
Sbjct: 346 FSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEVMKVSSHT 405

Query: 436 ---------NYASHRFSNNRPVL 449
                    N         +  L
Sbjct: 406 TENHELVVKNVIKDELDAYKARL 428


>gi|116754480|ref|YP_843598.1| threonyl-tRNA synthetase [Methanosaeta thermophila PT]
 gi|121694718|sp|A0B8D4|SYT_METTP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116665931|gb|ABK14958.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methanosaeta
           thermophila PT]
          Length = 619

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/439 (15%), Positives = 138/439 (31%), Gaps = 47/439 (10%)

Query: 19  EIASH-KLMLRTGMIHQH---SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
            I  H +LM R  ++        G   + P G+     + + + +     GA+E+  P +
Sbjct: 198 RIPPHVELMRRLELVDYEPGSDPGNMRYYPKGRLVKSLLESYVTDRALEMGAMEVETPVM 257

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
              D        D +        + + K +            +      SYR+LP   ++
Sbjct: 258 YDMDHPTLKKYLDRFPAR-QYAIEADKKHLFLRFAACFGQFLMGHDMTFSYRSLPLRMFE 316

Query: 135 -IQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
             +  FR E R    G+ R R F M D ++F      +   + K + + + +    GL  
Sbjct: 317 LTRYSFRREQRGELVGLRRLRAFTMPDMHTFCGDMSSAMEEFRKQYEASISVLRDAGLDL 376

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                                    E  +  +KDF +    +      DI+    ++E W
Sbjct: 377 KDY----------------------EVAIRFTKDFYENN-KTFIEGLVDIVDKPVLIEMW 413

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
              +            D+L +   +S   I+V        + +      +  A+G     
Sbjct: 414 DERFFYFVLKFEFNFVDALDKASALSTVQIDV--------ENAERYDIGYVDAEGNRQRP 465

Query: 313 QMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIY 369
            +          R++ A++E             +  +       I    +       ++ 
Sbjct: 466 IILHCSPSGAIERLMYALLEKQAMIAANGGLPMLPTWLSPTQVRIIPVAERHHARAMEVA 525

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLT-GIR 426
            +L      V  DD  E +G +   A     P   +VG + +S     V ++   T   +
Sbjct: 526 EQL---NFRVDVDDRDETVGKKIRDAGREWVPYVAVVGDEELSTGLLTVTVRSESTSNQK 582

Query: 427 EDMSLEEVINYASHRFSNN 445
             MS+EE+        +  
Sbjct: 583 IKMSVEELRARLQSETAGR 601


>gi|294654601|ref|XP_456661.2| DEHA2A07678p [Debaryomyces hansenii CBS767]
 gi|199429004|emb|CAG84617.2| DEHA2A07678p [Debaryomyces hansenii]
          Length = 576

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 103/363 (28%), Positives = 168/363 (46%), Gaps = 17/363 (4%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
           I +H+L  + G I+    G+  WLP+G     NV+ +I        A E+++  L S+ L
Sbjct: 40  IPTHELFTKFGFINHPKPGLVHWLPVGLAISQNVSRVIHRRMRECNAEEINLSLLSSSQL 99

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W E+GR+D+   E+ +L D +        T EE +T +  +++ SY+NLP  +YQI  KF
Sbjct: 100 WQETGRWDN--SELFKLKDSSKNDFCLVATCEEEITKLIGANLNSYKNLPLLYYQINEKF 157

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           RDE RPR G++R REFLMKDAYSFDL  E +  +YNK+  +Y +IF  L +  +   A++
Sbjct: 158 RDEKRPRSGLLRGREFLMKDAYSFDLNEEAAMKTYNKVVDAYYKIFQDLRIPFVKADADT 217

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G IGG LSHE+  L   GE  +F   +  +           +I    S  E       A+
Sbjct: 218 GEIGGTLSHEWHYLHKVGEDTLFTCDECGNSS---------NIEKALSYPEDVDDSVDAS 268

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                 K   +L      + R IE    F       L ++ T + +  K+   +      
Sbjct: 269 VQYFMTKDKSTLVCAYYPTDRTIEA--SFVKEEVPDLDLNETNQDSILKEFSDEDTLISK 326

Query: 320 GAMRVVAAVIE---SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             +R++ + +    +  D        S+      +  + A +      CE+ + +L +  
Sbjct: 327 KIIRMMDSRLNSRSNFPDFPIKFINRSLITTLTDIPIVTAVEDEICAKCEEGHLKLHRA- 385

Query: 377 CDV 379
            +V
Sbjct: 386 IEV 388



 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 13/166 (7%)

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF----KGADGKDHYVQMGSYGI 319
            +++     E      R IEVGH FY G KYS P+        +    +   V MG YGI
Sbjct: 368 EDEICAKCEEGHLKLHRAIEVGHTFYLGDKYSKPLKCEVEVPNQDGSQQLTNVLMGCYGI 427

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R++AA+ E + D  G  WP  +AP+ ++++     D        K+Y  L+      
Sbjct: 428 GISRIIAAIGEINKDSTGFRWPSVIAPWNVTVVQSPKFDDS---KGIKVYNLLNAASISY 484

Query: 380 FWDDMGE-QIGSQFAVADLLGFPLQVIVGSKF--VSDSKVEIKHRL 422
             DD  +  +G +   + ++G PL VI+G++F  V    VEI+ R 
Sbjct: 485 RLDDRSKIGLGKKIKQSHMVGIPLTVILGNQFPLVE---VEIRGRR 527


>gi|256372043|ref|YP_003109867.1| glycyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008627|gb|ACU54194.1| glycyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 448

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/435 (12%), Positives = 130/435 (29%), Gaps = 36/435 (8%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G I   +    G    Y + PLG   L  +           R   + +    L    +
Sbjct: 16  RRGFIFPSAELYGGFRSAYDFGPLGVLLLRKIREAWWSYMVRERREVVGLEASILTPPAI 75

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG  + +   ++   D       +     + +     S   +     F         
Sbjct: 76  WRASGHLEHFTDPLV---DCRSCHERWRADQIDGVCPKCGSRDLTPARA-FNLMFRTFVG 131

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
             E       +R      +  +    +   +        ++ +    R  +        +
Sbjct: 132 PVEGEGAEAYLR--PETAQGMFVDAQSVARAMRLRPPFGIAQIGKSFRNEITPGNFVFRT 189

Query: 200 GPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                     F+  +   E    + ++    +    E     D + L        + Y++
Sbjct: 190 REFEQMEMEYFVHPSVAAEAHDFWIAERLRWY---QELGLEGDWLRLREHDADELSHYSS 246

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS-LPMSATFKGADGKDHYVQMGSY 317
            +     +      E + ++ R       F      +      +      ++ Y      
Sbjct: 247 RTVDIEFRFPWGYGELEGIANR-----TDFDLRAHAAASGEDLSVLDPVTEERYYPSTIE 301

Query: 318 GIG-AMRVVAAVIESSHDGKGII--------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
             G   R   A + +++    +             +AP+ ++++ +        +   +I
Sbjct: 302 PAGGVTRAAMAFLLAAYHVDEVNGESRTVLRLSPHLAPYTVAVLPLSRK-PALVELAHEI 360

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +A L+ +  DV +D+  + IG ++   D +G P  V V    + D  V ++ R T  +  
Sbjct: 361 FADLATI-VDVDYDET-QSIGRRYRRQDEIGTPWCVTVDFDSLEDRAVTVRDRDTLEQVR 418

Query: 429 MSLEEVINYASHRFS 443
           + + +++ +   R +
Sbjct: 419 IPVADLVAHVRERLA 433


>gi|255720300|ref|XP_002556430.1| KLTH0H13046p [Lachancea thermotolerans]
 gi|238942396|emb|CAR30568.1| KLTH0H13046p [Lachancea thermotolerans]
          Length = 675

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 59/455 (12%), Positives = 124/455 (27%), Gaps = 83/455 (18%)

Query: 17  DAEIAS----HKLMLRTGMIHQH-----------SKGIYSWLPLGQKALDNVNAIIREEQ 61
           DA++       KL   +G   Q              G Y   P      + +     ++ 
Sbjct: 168 DAKLIGITVDKKLD-FSGWYQQVLTKGEMLDYYDVSGCYILRPPSYAIWEQIQRWFDDKI 226

Query: 62  NRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
              G      P   S+  L  E    + +  E+                           
Sbjct: 227 KSIGVQNAYFPMFVSSRVLEKEKDHIEGFAPEV--------------------------- 259

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
                                     +        L +       +       Y K   S
Sbjct: 260 -------------------------AWVTRAGSSELEEPIAIRPTSETVMYPYYAKWVQS 294

Query: 181 YLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           Y  +  +L   +  +R E   P     + EF+     G T     ++ ++  +   +   
Sbjct: 295 YRDLPLKLNQWNSVVRWEFKHPQPFLRTREFL--WQEGHTAHLGQEEAIEEVMQILDFYA 352

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
                L   V                    +       + RGI+     + G  +S   +
Sbjct: 353 GVYEEL-LAVPVVKGKKTEKEKFAGGDFTTTCEGYIPQTGRGIQGATSHHLGQNFSKMFN 411

Query: 300 ATFKGADGKDHYV-QMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            + +   G +H          G + RV+  ++    D KG++ P  V+  +  ++ +  +
Sbjct: 412 ISVENPLGPEHPKVFAHQNSWGLSTRVIGVMVMIHSDNKGLVIPPRVSQHQCVVLPVGIN 471

Query: 358 DQVCRD-------ACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +   +          +I  +L       F D +     G +F+  +L G PL++  G K
Sbjct: 472 SKTSDEQRAVIHQKAREIEQKLRASNVRAFGDYNDNYTPGWKFSQYELKGIPLRLEFGPK 531

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            ++  +V +  R    +  +   ++          
Sbjct: 532 DMAQDQVSVVRRNDNRKYTVKTADLETRIPEILEE 566


>gi|296454481|ref|YP_003661624.1| glycyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183912|gb|ADH00794.1| glycyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 490

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 69/440 (15%), Positives = 136/440 (30%), Gaps = 42/440 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +   ++WV SG    +     E L
Sbjct: 33  WDYGPLGVALKDNIKREWWRSMVVTRPDVVGVDTSIILPPEVWVASGHVSVFNDPLVECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               RN    +     E+    +  + +K                  E R    ++R+  
Sbjct: 93  NCHKRNRADKLEESYAEKHGDKMPENGMKDIVCPNCGTRGQWT----EPRDFNMMLRTHL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +             +G            I    
Sbjct: 149 GPVEDENSLHYLRPETAQGIFVDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTR 208

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E       D             +++       E+ +     T D
Sbjct: 209 EFEQMEMEFFVTPGTDEEWHQYWIDARTRWYIDLGVKPENLRHYEHPKEKLSHYSKRTVD 268

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  +  F      +     GI     F     +K+S    + F  A G+ +   +     
Sbjct: 269 IEYKFGFQGSDWGELE---GIANRTDFDLSAHSKHSGEDLSYFNQATGEKYVPYVIEPAA 325

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R +   +  ++D                      +AP K +++ +    ++     +
Sbjct: 326 GLTRSLMCFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQT-VAQ 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L      + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +
Sbjct: 385 NLADDLRFNEWMIDYDESGA-IGRRYRRQDEIGTPLCITVDFDTLEDHAVTIRERDTMAQ 443

Query: 427 EDMSLEEVINYASHRFSNNR 446
           E ++L++V +Y + R    R
Sbjct: 444 ERIALDKVADYVAARIGEKR 463


>gi|282854107|ref|ZP_06263444.1| glycine--tRNA ligase [Propionibacterium acnes J139]
 gi|282583560|gb|EFB88940.1| glycine--tRNA ligase [Propionibacterium acnes J139]
          Length = 481

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 63/434 (14%), Positives = 132/434 (30%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P G +  +N+           R   + +    +   ++WV SG    +   +    
Sbjct: 52  WDYGPFGVELKENIKRQWWRAMVTRRDDVVGLDSSVILPREVWVASGHVGVFNDPLTECL 111

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + + M      E        +   S             K +  E R    ++++    
Sbjct: 112 SCHKR-MRADHLQEGHAAKHGIADPDSISLEEVNCPNCGNKGQWTEPRDFNMMLKTYLGP 170

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG---- 204
           ++D          +       F + L    +         G            I      
Sbjct: 171 VEDKSGLHYLRPETAQGIFVNFQNVLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREF 230

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V   T E       D           + D++       E+ +     T DV 
Sbjct: 231 EQMEMEFFVEPGTDEEWHQYWIDARTAWYTDLGINPDNLRHYEHPKEKLSHYSKRTVDVE 290

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F      +     GI     F  G  +++S    + +  A+ K +   +     G 
Sbjct: 291 YKFGFTGSDWGELE---GIANRTDFDLGNHSRHSGKDLSYYDQANNKRYLPYVIEPAAGL 347

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       ++P K +++ +  +          +
Sbjct: 348 TRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRLSPVKAAVLPLSRNSD-LSPKARDL 406

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ARL +   +V +DD    IG ++   D +G P  + V    + D  V ++ R T  ++ 
Sbjct: 407 AARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCITVDFDSLEDDAVTVRERDTMAQQR 464

Query: 429 MSLEEVINYASHRF 442
           +S+++V  Y   R 
Sbjct: 465 VSIDKVEEYLGGRL 478


>gi|238591358|ref|XP_002392585.1| hypothetical protein MPER_07812 [Moniliophthora perniciosa FA553]
 gi|215458845|gb|EEB93515.1| hypothetical protein MPER_07812 [Moniliophthora perniciosa FA553]
          Length = 210

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 80/205 (39%), Gaps = 6/205 (2%)

Query: 12  QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +   RD      +  L     +  S G   WLP G +  +N+  ++R E  + G  E+  
Sbjct: 10  EAAKRDHRKIGREQELF--FFNDVSPGSCFWLPHGTRIYNNLVELLRSEYWKRGYQEVIS 67

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + +  LW  SG + +Y   M  + D   +     P +      IF S  +SY+ LP  
Sbjct: 68  PNMFNTKLWETSGHWQNYTDGMF-VLDVEKEKWALKPMNCPGHCIIFDSRDRSYKELPIR 126

Query: 132 FYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             +  +  R+E      G+ R R F+  D + F + P   +    ++F     ++   G 
Sbjct: 127 MAEFGIIHRNEASGALTGLTRVRRFVQDDTHVFCM-PSQIEEEIGRLFDFMQHVYGLFGF 185

Query: 191 KSIPMRAESGPIGGDLSHEFIVLAD 215
           +   +   + P       +   +A+
Sbjct: 186 EF-HLELSTRPENFLGDIKTWEVAE 209


>gi|238879629|gb|EEQ43267.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 575

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 122/238 (51%), Gaps = 8/238 (3%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           +I +H+++ + G I     G+ +W  +G    + ++ IIR+  +     E+S+  +   +
Sbjct: 29  QIPTHEVLTKLGYITYPRAGLVNWSKMGLLIQNKISQIIRQRMDEIQFEEVSLSLISHKE 88

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQL 137
           LW  + R+D        +        +  PT EE +T+  +     SY+N P   YQI  
Sbjct: 89  LWKLTNRWDQEE-----IFKLVGDEYLLVPTAEEEITNYVKKQFLESYKNFPLALYQINP 143

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           KFR+E RPR G++R +EFLMKDAYSFDL    +  +Y K+  +Y +IF  LG+  +   A
Sbjct: 144 KFRNEKRPRGGLLRGKEFLMKDAYSFDLNESEAMKTYEKVVGAYHKIFQDLGIPYVKAEA 203

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP--IPSENTDFDDIISLNSIVEQWT 253
           +SG IGG LSHE+  L  +GE  VF   +  +      + +   +   ++   V+ +T
Sbjct: 204 DSGDIGGSLSHEWHYLNSSGEDTVFECNECHNVSNMEKALSYPKEIDETIEVSVKYFT 261



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 15/159 (9%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK----GADGKDHYVQMGSYGIGA 321
           ++     E    ++  IEVGH FY G KYS P+             +   + MG YGIG 
Sbjct: 353 EICGHCEEGTLSASSAIEVGHTFYLGDKYSKPLDLEVDVPTSNKSIEKQRIMMGCYGIGI 412

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-----------VCRDACEKIYA 370
            R++AA+ E + D KG+ WP S+AP++++++ +    Q             +D  ++IY 
Sbjct: 413 SRIIAAIAEINRDEKGLKWPRSIAPWEVTVVEVSKQKQLKNVNDNNHHNNPQDNFQEIYN 472

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            L++   D   D+  + +G +   +DLLG PL +I+G++
Sbjct: 473 ILNQANIDYRLDNRSDSMGKKLKQSDLLGIPLSIILGNQ 511


>gi|225027257|ref|ZP_03716449.1| hypothetical protein EUBHAL_01513 [Eubacterium hallii DSM 3353]
 gi|224955410|gb|EEG36619.1| hypothetical protein EUBHAL_01513 [Eubacterium hallii DSM 3353]
          Length = 462

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/444 (15%), Positives = 139/444 (31%), Gaps = 54/444 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG   S+   +
Sbjct: 32  WDYGNLGVELKNNVKKAWWKKFI----QESPYNVGVDCAILMNPQTWVASGHLGSFSDPL 87

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVM 150
           +   +  ++        E+   +       S   +       +            +    
Sbjct: 88  MDCKECKER-FRADKIIEDFAQEHEIELESSVDGWSQEKMKAFIDDNNVPCPSCGKHNFT 146

Query: 151 RSREFLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSI 193
             R+F +       +T +     Y                             ++G    
Sbjct: 147 DIRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVARTSRKKIPFGIGQIGKSFR 206

Query: 194 PMRAESGPIGGDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                          E     F    DT        KDF    +       +++   +  
Sbjct: 207 NEITPGNFTFRTREFEQMELEFFCKPDTDLEWFAYWKDFCVNWLKDLGLKDEELRIRDHD 266

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E+ +  Y+  +            E   ++ R     +      + S      F  A+ K
Sbjct: 267 KEELS-FYSKATSDIEFLFPFGWGELWGIADRTDYDLNCHQ---EVSGQDLTYFDDAEKK 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQ 359
            +   +    +GA RV  A + +++D            + +  ++AP K+ ++ +     
Sbjct: 323 KYIPYVIEPSLGADRVTLAFLCAAYDEEEIKDGETRNVMHFHPAIAPVKVGILPLSKK-- 380

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  EKIY  LSK+  +  +DD G  IG ++   D +G P  V      V D  V ++
Sbjct: 381 -LNEGAEKIYHELSKI-YNCEFDDRG-NIGKRYRRQDEIGTPYCVTYDFDSVEDGAVTVR 437

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R T  +E + +E++ +Y + +F+
Sbjct: 438 DRDTMEQERIKIEDLKDYFAEKFN 461


>gi|2501044|sp|P78600|SYPC_CANAL RecName: Full=Prolyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Proline--tRNA ligase; Short=ProRS
 gi|1845347|gb|AAC49876.1| prolyl-tRNA synthetase [Candida albicans]
          Length = 575

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 6/232 (2%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           +I +H+++ + G I     G+ +W  +G    + ++ IIR+  +     E+S+  +   +
Sbjct: 29  QIPTHEVLTKLGYITYPRAGLVNWSKMGLLIQNKISQIIRQRMDEIQFEEVSLSLISHKE 88

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQL 137
           LW  + R+D        +        +  PT EE +T+  +     SY+N P   YQI  
Sbjct: 89  LWKLTNRWDQEE-----IFKLVGDEYLLVPTAEEEITNYVKKQFLESYKNFPLALYQINP 143

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           KFR+E RPR G++R +EFLMKDAYSFDL    +  +Y K+  +Y +IF  LG+  +   A
Sbjct: 144 KFRNEKRPRGGLLRGKEFLMKDAYSFDLNESEAMKTYEKVVGAYHKIFQDLGIPYVKAEA 203

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           +SG IGG LSHE+  L  +GE  VF   +  +     +   +   I     V
Sbjct: 204 DSGDIGGSLSHEWHYLNSSGEDTVFECNECHNVSNMEKALSYPKEIDETIEV 255



 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 15/159 (9%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK----GADGKDHYVQMGSYGIGA 321
           ++     E K  ++  IEVGH FY G KYS P+             +   + MG YGIG 
Sbjct: 353 EICGHCEEGKLSASSAIEVGHTFYLGDKYSKPLDLEVDVPTSNNSIEKQRIMMGCYGIGI 412

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-----------VCRDACEKIYA 370
            R++AA+ E + D KG+ WP S+AP++++++ +    Q             +D  ++IY 
Sbjct: 413 SRIIAAIAEINRDEKGLKWPRSIAPWEVTVVEVSKQKQLKNVNDNNHHNNPQDNFQEIYN 472

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            L++   D   D+  + +G +   +DLLG PL +I+G++
Sbjct: 473 ILNQANIDYRLDNRSDSMGKKLKQSDLLGIPLSIILGNQ 511


>gi|241958042|ref|XP_002421740.1| prolyl-tRNA synthetase, cytoplasmic, putative [Candida dubliniensis
           CD36]
 gi|223645085|emb|CAX39680.1| prolyl-tRNA synthetase, cytoplasmic, putative [Candida dubliniensis
           CD36]
          Length = 567

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 117/232 (50%), Gaps = 6/232 (2%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           +I +H+++ + G I     G+ +W  +G    + +N IIR+  +     E+S+  +   D
Sbjct: 29  QIPTHEVLTKLGYITYPRAGLVNWSKMGLLIQNKINQIIRQRMDEINFEEISLSLISHKD 88

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQL 137
           LW  + R+D        +        +  PT EE +T+  +     SY+N P   YQI  
Sbjct: 89  LWKLTNRWDQEE-----IFKLVGDEYLLVPTAEEEITNYVKKQFLESYKNFPVGLYQINP 143

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           KFR+E RPR G++R +EFLMKDAYSFDL    +  +Y K+  +Y +IF  LG+  +   A
Sbjct: 144 KFRNEKRPRGGLLRGKEFLMKDAYSFDLNESEAMKTYEKVVGAYHKIFQDLGIPYVKAEA 203

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           +SG IGG LSHE+  L  +GE  VF   +  +     +   +   I     V
Sbjct: 204 DSGDIGGSLSHEWHYLNSSGEDTVFECNECHNVSNMEKALSYPKEIDETIDV 255



 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 15/171 (8%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF----KGADGKDHYVQMGSYGIGA 321
           ++     +    ++  IEVGH FY G KYS P+           + +   + MG YGIG 
Sbjct: 353 EICAHCEDGTLSASSAIEVGHTFYLGDKYSKPLDLEVDVPTLNNNIEKQRIMMGCYGIGI 412

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFK-------ISLINIKAHDQVCRDACEKIYARLSK 374
            R++AA+ E + D KG+ WP S+AP++           +   +D    +  +++Y  L++
Sbjct: 413 SRIIAAIAEINRDEKGLKWPRSIAPWEVTIVEVSQQKQSTNDNDNPQENF-KEVYNILNE 471

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
              D   D+  + +G +   ++L+G PL +I+G+++     +EI+ R    
Sbjct: 472 ANIDYRLDNRSDSMGKKLKQSNLIGIPLSIILGNQY---PIIEIEVRGDKK 519


>gi|289425072|ref|ZP_06426849.1| glycine--tRNA ligase [Propionibacterium acnes SK187]
 gi|295130509|ref|YP_003581172.1| glycine--tRNA ligase [Propionibacterium acnes SK137]
 gi|289154050|gb|EFD02738.1| glycine--tRNA ligase [Propionibacterium acnes SK187]
 gi|291377378|gb|ADE01233.1| glycine--tRNA ligase [Propionibacterium acnes SK137]
          Length = 481

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 63/434 (14%), Positives = 132/434 (30%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P G +  +N+           R   + +    +   ++WV SG    +   +    
Sbjct: 52  WDYGPFGVELKENIKRQWWRAMVTRRDDVVGLDSSVILPREVWVASGHVGVFNDPLTECL 111

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + + M      E        +   S             K +  E R    ++++    
Sbjct: 112 SCHKR-MRADHLQEGHAAKHGIADPDSISLEEVNCPNCGNKGQWTEPRDFNMMLKTYLGP 170

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG---- 204
           ++D          +       F + L    +         G            I      
Sbjct: 171 VEDKSGLHYLRPETAQGIFVNFQNVLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREF 230

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V   T E       D           + D++       E+ +     T DV 
Sbjct: 231 EQMEMEFFVEPGTDEEWHQYWIDVRTAWYTDLGINPDNLRHYEHPKEKLSHYSKRTVDVE 290

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F      +     GI     F  G  +++S    + +  A+ K +   +     G 
Sbjct: 291 YKFGFSGSDWGELE---GIANRTDFDLGNHSRHSGKDLSYYDQANNKRYLPYVIEPAAGL 347

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       ++P K +++ +  +          +
Sbjct: 348 TRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRLSPVKAAVLPLSRNSD-LSPKARDL 406

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ARL +   +V +DD    IG ++   D +G P  + V    + D  V I+ R T  ++ 
Sbjct: 407 AARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCITVDFDSLEDDAVTIRERDTMAQQR 464

Query: 429 MSLEEVINYASHRF 442
           +S+++V  Y   + 
Sbjct: 465 VSIDKVEEYLGGKL 478


>gi|321309543|ref|YP_004191872.1| threonyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
 gi|319801387|emb|CBY92033.1| threonyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
          Length = 501

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 59/400 (14%), Positives = 108/400 (27%), Gaps = 32/400 (8%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           +D       L +          G+  WL  G    + +   I   Q   G   +S P L 
Sbjct: 77  KDHRGIGKNLRIF-DFDPLIGAGMPIWLERGHLIKEEIKNYINRIQRNNGIAIVSTPELG 135

Query: 76  SADLWVESGRYDSYGKEMLRL-ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             +L+  SG +D Y + M    +   +   I  P        +++   +  + LP  F +
Sbjct: 136 KKELYQTSGHWDHYQENMFPSLSLEGEGEYILRPMTCPHHIILYKKQKRHEKQLPIAFGE 195

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
                R E       +     +                S +K+F     I     ++   
Sbjct: 196 NARLHRYEYSGGLFGLERTRCMELIDTHLFCAKNQIFESLDKVFGIIQDIKEAFEIEYHS 255

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +      +                 + F  ++       S     D             A
Sbjct: 256 IVLSLRDVNNKD-------------KFFDDENLWSLSEGSLKEFLDSKKIEYVEGIGDAA 302

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
            Y    D   E     +               I      +SLP     K     +   + 
Sbjct: 303 FYGPKIDFQIETYAGKII-------------TISTIQLDFSLPQKFELKYTGMDEKDHEP 349

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               +G +  +   I    +      P  ++P +++LI +        D+  K+      
Sbjct: 350 IMIHVGIIGTLERFIAYLLERNNGWLPFWLSPTQVTLIPVNR--DSHLDSVRKLENFYRS 407

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLG-FPLQVIVGSKFVSD 413
               V  D  G  +G + A A     F   + VG K   +
Sbjct: 408 KNIRVEVDQSGLSLGKKIAKAIEKRSFGFMI-VGDKEAQE 446


>gi|10800405|gb|AAG23138.2|AF245446_1 prolyl-tRNA synthetase [Giardia intestinalis]
          Length = 542

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 140/443 (31%), Gaps = 91/443 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G   + P G    + +  +  EE  + G  ++  PT+     L  ES     +  E   +
Sbjct: 70  GCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWV 129

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                   ++ +   PT E  +  +F   ++SY++LP   +Q    FR E +    ++R 
Sbjct: 130 EKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRV 189

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           RE                                               I  + +H    
Sbjct: 190 RE-----------------------------------------------IHWNEAHCCHA 202

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+   +Q+      +D     E       +          A Y+  SDV          
Sbjct: 203 TAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDV-----VMPCG 257

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  R ++   I   G ++S      +     +  +  +   GI + RV+A  +   
Sbjct: 258 -------RVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGI-STRVLACALSIH 309

Query: 333 HDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKV-GCDVFWDDM 384
            D  G++ P  +AP  + +I I          DQ       +I   L    G  V  DD 
Sbjct: 310 GDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDD 369

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI--REDMSLEEVI------ 435
             + +G +    +L G PL++ VG + +++ +  +  R  G   +  + + EV+      
Sbjct: 370 FSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEVMKVSSHT 429

Query: 436 ---------NYASHRFSNNRPVL 449
                    N         +  L
Sbjct: 430 TENHELVVKNVIKDELDAYKARL 452


>gi|150401612|ref|YP_001325378.1| threonyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
 gi|166223353|sp|A6UW94|SYT_META3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150014315|gb|ABR56766.1| threonyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
          Length = 630

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/396 (12%), Positives = 117/396 (29%), Gaps = 37/396 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + W P G+   D +   +         + +  P +            D +G+   R 
Sbjct: 226 AGHFRWYPKGKLIRDLLQDYVYNMVVENNGMPVETPVMYDLGNKAIKEHADKFGERQYRF 285

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSRE 154
               +K ++           + +      ++LP   Y++    FR E R    G+ R R 
Sbjct: 286 KQ-GNKDLMLRFAACFGQFMMKKDMYILPKHLPLKLYELSTYSFRYEQRGELVGLKRLRG 344

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++     + +   +   F   L+    L      +   +     + + E+    
Sbjct: 345 FTMPDMHTVCKDTKQTIEEFENQFWMCLKTGDDLNTPYSTIFRFTEDFF-EENKEWFFKV 403

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                + +     ++                   + +    +    D+    + DS    
Sbjct: 404 AKEYKEKYGKDVILEL------------------IPERKHYWVGKVDM---AVIDSFGRP 442

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH- 333
                  I+V        + +   +      + K + V +     G++  V   +     
Sbjct: 443 IENPTVQIDV--------ESAKRFNIVVHDGNEKTYPVILHCSPTGSIERVLCGLLEKAS 494

Query: 334 -DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D      P            +        +    +  +L + G    +DD  E +G + 
Sbjct: 495 LDADAGAPPMLPVWLSPIQARVIPVADAHSEYALSVAKKLRENGIRADFDDREESVGKKI 554

Query: 393 AVADLLGFPLQVIVGSKFVSDSKV--EIKHRLTGIR 426
             A     P  +++G K V ++ +   I+ + T  +
Sbjct: 555 RNAGKDWVPFVIVIGDKEVENNILTTTIREKSTLKK 590


>gi|229003388|ref|ZP_04161210.1| Prolyl-tRNA synthetase 2 [Bacillus mycoides Rock1-4]
 gi|228757863|gb|EEM07086.1| Prolyl-tRNA synthetase 2 [Bacillus mycoides Rock1-4]
          Length = 257

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 79/169 (46%), Gaps = 2/169 (1%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I    D 
Sbjct: 1   MHDGKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVHSDN 59

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            G++ P  VAP ++ ++ I  H +   +   ++  R+ KV   V  D   +  G +F   
Sbjct: 60  NGLVMPPKVAPVQVVIVPIAQHKEGVLEKATQLQGRIQKV-ARVKIDASNKTPGWKFNEY 118

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G P+++ VG K +  ++V +  R T  +E +S++++    +     
Sbjct: 119 EMKGVPIRLEVGPKDIEKNQVVLVRRDTKEKEFVSMDQLEERITSLLDE 167


>gi|225550771|ref|ZP_03771720.1| proline--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225379925|gb|EEH02287.1| proline--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 472

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/411 (15%), Positives = 138/411 (33%), Gaps = 61/411 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRL 96
           G+  + P      + +   I  E  + G   +++PTL   ++   E    + +  E+  +
Sbjct: 36  GMMVFQPNAWAIWEAIKNQIDLEFKKHGVRNLAMPTLIPLSEFQKEKDHIEGFAPELFMV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               DK +                                                    
Sbjct: 96  NQIGDKKLDNPYA----------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + +  +  SY  +  +       MRAE        + EF      
Sbjct: 109 -----IRPTSEILFCNYFKNIVNSYNDLPIKNNQWCSVMRAEKTTRPFLRNAEFHWQ--- 160

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
               +F S+   D    +    + D +     +                +   ++ E   
Sbjct: 161 ELHAIFASEHEADEFAKTILDVYTDFVQNYLCIPVIKGLKTPWERFAGAQKTYTI-EAMM 219

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+G D + HYV   S G+ + R++ A+I    D +
Sbjct: 220 QDGQALQSATSHYLGQFFAKAYDIKFQGQDNQMHYVHQMSAGL-STRIIGALIMVHADDQ 278

Query: 337 GIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           G+I P  +A  +I++++I    +       E+I   LS     +F D   + +G + A  
Sbjct: 279 GLILPPDIAFNQIAILSIFANKNPQLLTISEQIRNELSD--YRLFEDHSDKGVGYKLAQQ 336

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ G P+ ++VG K +++ +V +  R T  + +++L ++ +       + +
Sbjct: 337 EIEGTPICILVGVKELANQQVVLVRRDTHEKINVNLVDLESTVKKLLLDIK 387


>gi|154488946|ref|ZP_02029795.1| hypothetical protein BIFADO_02255 [Bifidobacterium adolescentis
           L2-32]
 gi|154083083|gb|EDN82128.1| hypothetical protein BIFADO_02255 [Bifidobacterium adolescentis
           L2-32]
          Length = 491

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 69/440 (15%), Positives = 132/440 (30%), Gaps = 42/440 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +    +WV SG    +     E L
Sbjct: 33  WDYGPLGVALKDNIKREWWRSMVVTRGDVVGVDTSIILPTPVWVASGHVAVFNDPLVECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R     +     E+    +  + +                   E R    ++R+  
Sbjct: 93  NCHKRQRSDKLEESYAEKHGDKLPENGMADIVCPDCGTRGKWT----EPRDFNMMLRTHL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------LGLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +    +        +G            I    
Sbjct: 149 GPVEDENSLHYLRPETAQGIFVDFKNVMTSSRKKPPFGIANMGKSFRNEITPGNFIFRTR 208

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V     E       D             +++       E+       T D
Sbjct: 209 EFEQMEMEFFVKPGEDEAWHQYWIDARTQWYLDLGVKPENLRHYEHPKEKLAHYSKRTVD 268

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGI 319
           +  +  F      +     GI     F       +S    + F  A G+ +   +     
Sbjct: 269 IEYKFGFQGSDWGELE---GIANRTDFDLSAHAEHSGEDLSYFNQATGEKYVPYVIEPAA 325

Query: 320 GAMRVVAAVIESSHDGKGI-------------IWPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R +   +  ++D                      +AP K +++ +     +     +
Sbjct: 326 GLTRSLMCFLVDAYDVDEAPNTKGGVDKRTVLHLDPRLAPVKAAVLPLSKKPDLQN-VAQ 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+ A L +    + +D+ G  IG ++   D +G PL V V    + D  V I+ R T  +
Sbjct: 385 KLAADLRQNEWMIDYDEAGA-IGRRYRREDEIGTPLCVTVDFDTLDDQAVTIRERDTMQQ 443

Query: 427 EDMSLEEVINYASHRFSNNR 446
           E +SL++V +Y + R    R
Sbjct: 444 ERVSLDKVADYIAERIGEKR 463


>gi|218200879|gb|EEC83306.1| hypothetical protein OsI_28675 [Oryza sativa Indica Group]
          Length = 306

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 86/229 (37%), Gaps = 15/229 (6%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             +     +  +          ++      I E   A Y    D+    +FD+L    + 
Sbjct: 93  PEKYLGDIETWNKAEQQLTEALNEFGKPWQINEGDGAFYGPKIDIG---VFDALKRKFQC 149

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +   ++    F    ++ L  SA        +  V +    +G++  + A++    +   
Sbjct: 150 ATLQLD----FQLPLRFKLTYSAE--DEAKLERPVMIHRAILGSVERMFAILL---EHYN 200

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
             WP  ++P +  + +I ++     +  +++ AR+ + G  V  D+    I  +   A L
Sbjct: 201 GKWPLWLSPRQAIVCSISSNS---VEYAKQVRARIHEAGFHVAIDETDRTIQKKVREAQL 257

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             F   ++VG++     +V ++ R       +S++++I       +  +
Sbjct: 258 AQFNYILVVGAQEAETGQVSVRVRDKAELATVSIDDIITRFKEEVAAYK 306


>gi|19553476|ref|NP_601478.1| glycyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|62391119|ref|YP_226521.1| glycyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|145296232|ref|YP_001139053.1| glycyl-tRNA synthetase [Corynebacterium glutamicum R]
 gi|59798594|sp|Q8NNC6|SYG_CORGL RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|21325049|dbj|BAB99671.1| Glycyl-tRNA synthetase, class II [Corynebacterium glutamicum ATCC
           13032]
 gi|41326458|emb|CAF20620.1| GLYCYL-TRNA SYNTHETASE (GLYCINE--TRNA LIGASE) [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846152|dbj|BAF55151.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 461

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/436 (13%), Positives = 131/436 (30%), Gaps = 44/436 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           + + PLG +  +N+          +R   + +    +    +WV SG  + +   ++   
Sbjct: 34  WDYGPLGVELKENIKRQWWRSMVTSRPDVVGVDTSVILPRQVWVTSGHVEVFTDPLVESL 93

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  +A      +EE       + +    +              E +   G++++   
Sbjct: 94  NTHKRYRADHLLEQYEEKHGHPPVNGLADINDPETGQPGNWT----EPKAFSGLLKTFLG 149

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESGP 201
            + D          +       F + +                  R  +        +  
Sbjct: 150 PVDDEEGLHYLRPETAQGIFVNFKNVMNTSRMKPPFGIANIGKSFRNEITPGNFIFRTRE 209

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                   F+   +  E         + + I       +++       E+ +     T D
Sbjct: 210 FEQMEMEFFVKPGEDEEWHQHWIDTRLQWYIN-LGIKPENLRLYEHPQEKLSHYSKRTVD 268

Query: 262 VHNEKLF--DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     F      E + ++ R      +   G   S    + F     +     +     
Sbjct: 269 IEYAFNFANTKWGELEGIANRTDYDLRVHSEG---SGEDLSFFDQETNERWIPFVIEPAA 325

Query: 320 GAMRVVAAVIESSHDGKGIIWPD-------------SVAPFKISLINIKAHDQVCRDACE 366
           G  R +   +  ++                       +AP K++++ +   D       E
Sbjct: 326 GLGRAMMMFLMDAYHEDEAPNSKGGVDKRVVLKLDRRLAPVKVAVLPLSKKD-TLTPLAE 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+ A L +   +V +D  G  IG ++   D +G P  V V    + D+ V ++ R T  +
Sbjct: 385 KLAAELREFW-NVDYDTSGA-IGRRYRRQDEIGTPFCVTVDFDSLEDNAVTVRERDTMEQ 442

Query: 427 EDMSLEEVINYASHRF 442
             + L+E+  Y + R 
Sbjct: 443 VRVPLDELQGYLAQRL 458


>gi|224532290|ref|ZP_03672922.1| glycyl-tRNA synthetase [Borrelia valaisiana VS116]
 gi|224511755|gb|EEF82161.1| glycyl-tRNA synthetase [Borrelia valaisiana VS116]
          Length = 445

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 63/443 (14%), Positives = 135/443 (30%), Gaps = 37/443 (8%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G + Q S       G + + PLG +   N+     +         +          ++
Sbjct: 13  RKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKKEWWKSMV-YLHENIVGLDSAIFMRSE 71

Query: 79  LWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVM-TDIFRSHIKSYRNLPFTFYQ 134
           +W  SG  D +   M+   D   R     I    +          +  +S+  +  T   
Sbjct: 72  IWKASGHVDGFSDSMVDCKDCKSRFRADFIDLSKNCPNCKVGNNFTAPRSFNLMFKTHIG 131

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +      E+  R    +     +      D +         ++  ++             
Sbjct: 132 VVEDSSSEIYLRPETAQG--IFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
              E   +       F+      E   +  ++ M+F I +     D +        Q  A
Sbjct: 190 CEFEQMEMQF-----FVHPKQIDEWFCYWQQNRMNFFIETLKIRPDRLRFKAHDSTQL-A 243

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQ 313
            YA ++     +      E + +  RG             + P    +      + +   
Sbjct: 244 HYAKSAFDIEYEFPFGFQEVEGIHNRGNYDLT--QHSKFSNKPKIFEYHDLLTKERYVPY 301

Query: 314 MGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +     G  R V   +  ++             +     +AP+KI++  +    ++  + 
Sbjct: 302 VIETSAGLTRSVLMTLCDAYSEEKLSDGDKRIVLRLHPKLAPYKIAIFPLVKKIELI-EI 360

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +IY  L      +F+DD    IG ++   D +G P  V V    V D  V I+ R   
Sbjct: 361 ARRIYMELCD-DFHIFYDD-NGTIGKRYRRQDEIGTPYCVTVDYNTVEDKTVTIRERNNM 418

Query: 425 IREDMSLEEVINYASHRFSNNRP 447
            ++ + + ++ ++      N + 
Sbjct: 419 TQKRIFINDLYSHIKTEILNYKE 441


>gi|219851928|ref|YP_002466360.1| threonyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
 gi|254783527|sp|B8GHN2|SYT_METPE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219546187|gb|ACL16637.1| threonyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
          Length = 609

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 69/409 (16%), Positives = 131/409 (32%), Gaps = 52/409 (12%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ---SADLWVESGRYDSYGKEMLRLAD 98
           WLP G+   D +   +       G   +  P +       ++      D +G+   R   
Sbjct: 218 WLPRGKIVRDLLADYVLHMVLEYGGSPVETPVMYDLGDKAIYE---HADKFGERQYRFK- 273

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSREFL 156
             ++ M+        M  I R    S   LP   Y++    FR E R    G+ R R F 
Sbjct: 274 SGNRNMMLRFAACFGMFSIMRDMHISPNTLPIKMYELSTYSFRHEQRGEVIGLKRLRAFT 333

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           M D +S  L  EG+ H + +      +       + + +   +        +E  V +  
Sbjct: 334 MPDMHSLCLDMEGALHCFEEQLRLGWKSGEDFETELVGVFRCTRGFYEK--YENWVKSIV 391

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E++V           P       D +          A       + N  +         
Sbjct: 392 AESRV-----------PMLIEILSDRVHYWIAKVDLAAIDGQGRPIENPTV--------- 431

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIESSHDG 335
                           + S      +       H   +     G   RV+ A++E++ + 
Sbjct: 432 ------------QIDVESSTRFDIKYHLDGEVVHPPILHCSPTGSIERVICALLENTANQ 479

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                P  +AP ++ LI +    +      +++  RL+K       DD  E +G +   A
Sbjct: 480 SVPQLPAWLAPTQVRLIPVA---ERHTSFADELCTRLNKAQIRTDLDDREESVGKKVREA 536

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-----REDMSLEEVINYAS 439
            +   P  +++G   +   K+ +  R         +E + +EE+I    
Sbjct: 537 GMDWVPYVIVIGDAEMETGKLTVTIRKLSEPRVPHKEQLDVEELITLVR 585


>gi|229141141|ref|ZP_04269682.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST26]
 gi|228642304|gb|EEK98594.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST26]
 gi|324328306|gb|ADY23566.1| histidyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 476

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ EK+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYEKVQELLTMMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|228923155|ref|ZP_04086446.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836534|gb|EEM81884.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 476

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 63/413 (15%), Positives = 123/413 (29%), Gaps = 16/413 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-EFIVLADTG 217
                   P             Y  +  +     +    ++                  G
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDTASRQAHRDALIAHFEPRIG 242

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------ 271
           E    C       P+   +   D    L       T      S V+ +K+ + L      
Sbjct: 243 EFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDVP 302

Query: 272 --PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              +   V         +F   ++     + T     G+ + +     G     +  A+ 
Sbjct: 303 FEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAMS 362

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                         +         + A  +  +D   K+   L K G  V  D +  ++ 
Sbjct: 363 IERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKMK 422

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 423 AQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|207723063|ref|YP_002253475.1| threonyl-trna synthetase protein [Ralstonia solanacearum MolK2]
 gi|206588254|emb|CAQ18812.1| threonyl-trna synthetase protein [Ralstonia solanacearum MolK2]
          Length = 344

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L +L+E   RD      +L L    + + + G+  W P G +    V   +R     
Sbjct: 229 EAYLHMLEEAEKRDHRKLGKQLDLF--HLQEEAPGMVFWHPKGWQIWQAVEQYMRGRLAG 286

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            G  E+  P +    LW  SG + +Y + M  + +   +     P +      IF
Sbjct: 287 AGYSEVRTPQVMDRTLWEHSGHWQNYKENMF-VTESEKREYAIKPMNCPGHVQIF 340


>gi|50365084|ref|YP_053509.1| glycyl-tRNA synthetase [Mesoplasma florum L1]
 gi|59798529|sp|Q6F1J8|SYG_MESFL RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|50363640|gb|AAT75625.1| glycyl-tRNA synthetase [Mesoplasma florum L1]
          Length = 451

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/448 (12%), Positives = 132/448 (29%), Gaps = 43/448 (9%)

Query: 30  GMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWV 81
           G I Q S    G+   + + PLG +  + +         R     +      + ++ +W 
Sbjct: 12  GFIFQGSEIYGGLANSWDYGPLGVEVKNKLKQAWWNHFVRKNPYNIGLDSSIILNSSVWK 71

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            SG  D +   ++      +         EE  ++I    +   +   F   Q     + 
Sbjct: 72  ASGHIDGFNDPLIDCKKC-NSRWRADKLIEEFNSEINAGVMTENQMEEFIREQNIKCPKC 130

Query: 142 ELRPRFGVMRSREF--------------------LMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +      + +                          +  +      + S        +  
Sbjct: 131 QACDFTQIRKFALMFKTNQGVLEDESSSVYLRPETAQGIFINFKNAQRSLRKKLPFGIGQ 190

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           +    R  +        +          F   +D  +   +   + ++  +  +     +
Sbjct: 191 IGKSFRNEITPGNFIFRTREFEQMELEFFFNPSDEKDWFSY-WLNEVETFLQDKIQINKE 249

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
              + S  +   A Y+  +     K      E   V+ RG    +        +     T
Sbjct: 250 NYRVRSHEKDELAHYSTATSDIEFKFPFGWGELWGVAHRGNFDLNAHQ----EASKQDLT 305

Query: 302 FKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDG------KGIIWPDSVAPFKISLINI 354
           +      +     +    +G  R++ A++  ++           I            I +
Sbjct: 306 YLDPTTNQKVLPHVIEPSVGVERMMLAILWQAYHEEDLGEGNSRIVMKLPYNLAPYQIAV 365

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +   D  + +Y+ L     DV +D+ G  +G ++   D +G P  + V       +
Sbjct: 366 MPLQKQQNDQAQALYSNLL-NNFDVTYDETG-NVGKRYRRQDAIGTPFVITVDFDTPETN 423

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V ++ R +  +  ++L+E+  Y   +F
Sbjct: 424 SVTVRERDSMEQVRINLDELEAYLKAKF 451


>gi|223996893|ref|XP_002288120.1| glycyl tRNA synthetase [Thalassiosira pseudonana CCMP1335]
 gi|220977236|gb|EED95563.1| glycyl tRNA synthetase [Thalassiosira pseudonana CCMP1335]
          Length = 462

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 80/466 (17%), Positives = 150/466 (32%), Gaps = 49/466 (10%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNA-IIRE-EQNRTGAIEMS 70
           EI S  L  R G+I   S       G Y + PLG +   NV     R   Q R   + + 
Sbjct: 3   EIVS--LCKRRGIIFPSSEIYNGFAGFYDYGPLGSELKRNVKDAFWRNFVQCREDIVGLD 60

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIFRSHIKSY 125
              + +   W  SG  D +   M+   +     R D+        + +    F     + 
Sbjct: 61  SSIIHNPTTWQSSGHLDGFSDPMVDCRETKLRYRADQLFCAPADKKGMAIQPFAFKDLTQ 120

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFL-----MKDAYSFDLTPEGSKHSYNKMFVS 180
                           +         +  F      M+DA S       +       + +
Sbjct: 121 VTEEEMTQIPSPGSN-KPTLTMPRDFNLMFQTNVGAMQDASSVAYLRPETAQGIFINYKN 179

Query: 181 YLRIFH--------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            L            ++G            I      E + +           K F    I
Sbjct: 180 VLGTSRSKLPFGIAQIGKAFRNEITPRNFIFRSREFEQMEIEYFIPPGDEAWKPFHKQWI 239

Query: 233 PSENTDF------DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
               +        ++++  +       A YA        K    + E   ++ARG     
Sbjct: 240 EDSESFLKSVGLKEELMGYDVHEGDGLAHYARACTDITFKFPFGVQELMGIAARGDFDLK 299

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII------- 339
                T+ S  +   F     +     +    +G  R++ A+I S++    I        
Sbjct: 300 SH---TEGSGKVLDYFDEETKEKFIPHVIEPSLGVDRLILALICSAYAEDEINGEKRNYL 356

Query: 340 -WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            +  S+AP K+S++ +  + +    A  +++ +L +   +  WD  G  IG ++  AD +
Sbjct: 357 SFHPSIAPVKVSVLPLVKNKEPLVKAARELFEKLQRRW-NCQWDQTGA-IGRRYRRADEI 414

Query: 399 GFPLQVIVGSKFVS-DSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  V V  + +  D  V ++ R +  +  + ++EV+ Y S    
Sbjct: 415 GVPFCVTVDFETIEDDGAVTVRDRDSTEQVRIPMDEVVPYLSKMID 460


>gi|18311446|ref|NP_563380.1| glycyl-tRNA synthetase [Clostridium perfringens str. 13]
 gi|110798906|ref|YP_697152.1| glycyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|110803756|ref|YP_699720.1| glycyl-tRNA synthetase [Clostridium perfringens SM101]
 gi|168206859|ref|ZP_02632864.1| glycyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|168211214|ref|ZP_02636839.1| glycyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|168215148|ref|ZP_02640773.1| glycyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|168218224|ref|ZP_02643849.1| glycyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
 gi|169343166|ref|ZP_02864187.1| glycyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
 gi|182625996|ref|ZP_02953759.1| glycyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|59798596|sp|Q8XHL9|SYG_CLOPE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|18146130|dbj|BAB82170.1| glycine-tRNA ligase [Clostridium perfringens str. 13]
 gi|110673553|gb|ABG82540.1| glycyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|110684257|gb|ABG87627.1| glycine--tRNA ligase [Clostridium perfringens SM101]
 gi|169298718|gb|EDS80794.1| glycyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
 gi|170661742|gb|EDT14425.1| glycyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|170710778|gb|EDT22960.1| glycyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|170713451|gb|EDT25633.1| glycyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|177908703|gb|EDT71214.1| glycyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|182379763|gb|EDT77242.1| glycyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
          Length = 467

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/459 (13%), Positives = 143/459 (31%), Gaps = 55/459 (11%)

Query: 30  GMI---HQHSKGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWV 81
           G I    +   G+   + + PLG +  +NV     ++  +     +      L + ++WV
Sbjct: 18  GFIFPGSEIYGGLANSWDYGPLGVEFKNNVKRAWWKKFVQESKYNVGLDSAILMNREVWV 77

Query: 82  ESGRYDSYGKEMLRLA--------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            SG    +   ++           D+  +  +     E    D + +             
Sbjct: 78  ASGHVGGFSDPLMDCKECKARFRADKLVEDHMTANGAEVATADGWSNEELMDYITKNNIV 137

Query: 134 Q--IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH----- 186
                     ++R    + ++ + + +D+ +       +       F S  R        
Sbjct: 138 CPKCGKLNYTDIRKFNLMFKTFQGITEDSKNEVYLRPETAQGIFVNFKSVQRTTRKKVPF 197

Query: 187 ---------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                    R  +        +          F       E   F      +F +     
Sbjct: 198 GIAQIGKSFRNEITPGNFTFRTREFEQMELEFFCKPGTDLEWFNFWKDSCWNFLLN--LG 255

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             ++ I +    E+  + Y+  +            E   ++ R     +      ++S  
Sbjct: 256 MKEENIRMRDHGEEELSFYSNATSDIEYLFPFGWGELWGIADRTDYDLNKH---AEHSGQ 312

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSV 344
                     + +   +    +GA RV  A +  ++D +              +    ++
Sbjct: 313 DMTYLDPTTNEKYVPYVIEPSLGADRVALAFLVEAYDEEELEGANGKVDVRTVMHLHPAL 372

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           APFK +++ +        +  +++YA LSK   +V +D+ G  IG ++   D +G P  +
Sbjct: 373 APFKAAILPLSKK---LSEKADEVYAELSKH-FNVDYDETG-SIGKRYRRQDEIGTPFCI 427

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V    + D  V ++ R    ++ + +E+V         
Sbjct: 428 TVDFDTLEDGCVTVRDRDNMEQQRVKIEDVRAIIEKSLE 466


>gi|83770284|dbj|BAE60417.1| unnamed protein product [Aspergillus oryzae]
          Length = 620

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 69/436 (15%), Positives = 132/436 (30%), Gaps = 93/436 (21%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P      + +         + G    S P   S D L  E    + +  E+  +    D 
Sbjct: 134 PASYFIWEEIQDWFNARIKKIGVKNCSFPLFVSEDVLNREKDHIEGFAAEVAWVTHAYDS 193

Query: 103 A-------------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           +             +   PT E VM   +   I+S+R+LP    Q     R E +     
Sbjct: 194 SRPSYIGSSPLEKKIAIRPTSETVMYPYYSKWIRSHRDLPLKLNQWNSVVRWEFKNPQPF 253

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +R+REFL ++ ++  LT +G+      +   Y +I+                        
Sbjct: 254 LRTREFLWQEGHTAHLTKDGAHDEVMHILDLYAQIYE----------------------- 290

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLF 268
                                    E      +    +  E++    Y  T + +     
Sbjct: 291 -------------------------ELLAVPVVKGQKTEKEKFAGGLYTTTVEGYIPA-- 323

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA-----MR 323
                    + RGI+ G     G  +S   + T +    K    +   +          R
Sbjct: 324 ---------TGRGIQGGTSHGLGQNFSKMFNITVEDPSTKPDEKKPPLHVWQNSWGLSTR 374

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------LSKVG 376
            +  ++    D +G++ P  VA  +  ++ +    +   +  EK+YA        L+  G
Sbjct: 375 TLGVMVMIHSDNRGLVLPPRVADTQTVIVPVGITAKTSDEEREKLYAEIDGLINILTGAG 434

Query: 377 CDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMSLE 432
                D   G   G +F   +L G PL++  G        V    R       +  + + 
Sbjct: 435 VRAISDKREGYSPGWKFNDWELRGVPLRIEFGPGESVGQFVTAARRDIPGKDGKSSIQIS 494

Query: 433 EV---INYASHRFSNN 445
           E+   +     +   +
Sbjct: 495 ELSTAVPALLEQIQKD 510


>gi|283458533|ref|YP_003363161.1| glycyl-tRNA synthetase [Rothia mucilaginosa DY-18]
 gi|283134576|dbj|BAI65341.1| glycyl-tRNA synthetase [Rothia mucilaginosa DY-18]
          Length = 502

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 63/455 (13%), Positives = 138/455 (30%), Gaps = 51/455 (11%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNV-----NAIIREEQNRTGAIEMSVPTLQS 76
           R G + Q      G    + + PLG +  +N+        +R   +  G   +    +  
Sbjct: 59  RRGFVFQAGEIYGGSRSAWDYGPLGAELKENIRQQWWQRFVRSRADMVG---LDSSVILP 115

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +W  SG   ++   ++   +           H     +  +       +         
Sbjct: 116 RAVWEASGHVATFTDPLV---ECLSCHKRLRQDHLLENFEAKKGRPAEGMDEIACPNCGT 172

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL-------- 188
                E +   G+M++    + +          +       F + +    +         
Sbjct: 173 RGEWTEPQNFSGLMKTYLGPVDNEEGLHFLRPETAQGIFVNFNNVVTASRKRPPFGIGQI 232

Query: 189 GLKSIPMRAESGPIGGDLSHEFI-----VLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           G            I      E +     V  D  +       +           + D++ 
Sbjct: 233 GKSFRNEITPGNFIFRTREFEQMEIEYFVHPDDADKYFNEWVEDCWNWFVDLGINPDNMR 292

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSAT 301
             +   E+     A T DV     F      + +   G+     +  G    +S      
Sbjct: 293 RFDVPQEERAHYSAGTIDVEYRFGFQGSEWGELM---GVANRTDYDLGVHNEHSNAKLEY 349

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFK 348
           F  A G+ +   +     G  R + A +  ++                       +AP K
Sbjct: 350 FDQATGERYVPYVIEPSFGLTRSMMAFLVDAYVEDEAPNTKGGVDKRVVLKLDPRLAPVK 409

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            +++ +    +   +   K+   L  +  +V +D+ G  IG ++   D +G P  + V  
Sbjct: 410 AAVLPLSKKAE-LSEPATKLANELRGLW-NVDYDEAGA-IGRRYRRQDEIGTPFCITVDF 466

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             + D  V I+ R T  +E ++L++V +Y + R +
Sbjct: 467 DTLEDQAVTIRERDTMNQERVALDQVKSYLAARLA 501


>gi|59798520|sp|Q6A964|SYG_PROAC RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
          Length = 472

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 63/434 (14%), Positives = 132/434 (30%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P G +  +N+           R   + +    +   ++WV SG    +   +    
Sbjct: 43  WDYGPFGVELKENIKRQWWRAMVTRRDDVVGLDSSVILPREVWVASGHVGVFNDPLTECL 102

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + + M      E        +   S             K +  E R    ++++    
Sbjct: 103 SCHKR-MRADHLQEGHAAKHGIADPDSISLEEVNCPNCGNKGQWTEPRDFNMMLKTYLGP 161

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG---- 204
           ++D          +       F + L    +         G            I      
Sbjct: 162 VEDKSGLHYLRPETAQGIFVNFQNVLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREF 221

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V   T E       D           + D++       E+ +     T DV 
Sbjct: 222 EQMEMEFFVEPGTDEEWHQYWIDVRTAWYTDLGINPDNLRHYEHPKEKLSHYSKRTVDVE 281

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F      +     GI     F  G  +++S    + +  A+ K +   +     G 
Sbjct: 282 YKFGFSGSDWGELE---GIANRTDFDLGNHSRHSGKDLSYYDQANNKRYLPYVIEPAAGL 338

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       ++P K +++ +  +          +
Sbjct: 339 TRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRLSPVKAAVLPLSRNSD-LSPKARDL 397

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ARL +   +V +DD    IG ++   D +G P  + V    + D  V I+ R T  ++ 
Sbjct: 398 AARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCITVDFDSLEDDAVTIRERDTMAQQR 455

Query: 429 MSLEEVINYASHRF 442
           +S+++V  Y   + 
Sbjct: 456 VSIDKVEEYLGGKL 469


>gi|160931282|ref|ZP_02078683.1| hypothetical protein CLOLEP_00119 [Clostridium leptum DSM 753]
 gi|156869760|gb|EDO63132.1| hypothetical protein CLOLEP_00119 [Clostridium leptum DSM 753]
          Length = 450

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 64/431 (14%), Positives = 146/431 (33%), Gaps = 36/431 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     +++    L +  +WV SG    +   ++   
Sbjct: 28  WDYGPLGVEFKNNVKNAWHKKFVQENPYNVALDSAILMNPQVWVASGHVGGFSDPLMDCK 87

Query: 98  D---RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           D   R+    +      +     F       +    T  +       ++R    + ++ +
Sbjct: 88  DCKTRHRADKLIEDAGGDANGMTFEQMSDYIKEHGITCPECGSANFTDIRKFNLMFKTFQ 147

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP------------- 201
            + +DA +       +       F +  R   R     +    +S               
Sbjct: 148 GVTEDAKNEIFLRPETAQGIFVNFANIQRTTRRKLPFGVCQIGKSFRNEITPGNFTFRTR 207

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF    DT     +  KD+    + S     +++   +   E+ +  Y+  + 
Sbjct: 208 EFEQMELEFFCKPDTDLEWFYYWKDYCKNWLLSLGIKEENMRLRDHEKEELS-FYSKATT 266

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                      E   ++ R             +S      F  +D   +   +    +GA
Sbjct: 267 DIEYLFPFGWGELWGIADRTNYDLKQHQ---DHSGKSLEYFDPSDNTRYIPYVVEPSLGA 323

Query: 322 MRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            RV  A +  ++D +          +    ++AP+K +++ +        +  EK+Y  L
Sbjct: 324 DRVALAFLCEAYDEEEVGEKDTRVVMHLHPALAPYKCAVLPLSKK---LNENAEKVYHML 380

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K    V +DD G  IG ++   D +G P  +       +D  V ++ R T  +E ++++
Sbjct: 381 QKR-FMVEYDDAG-SIGKRYRRQDEIGTPFCLTYDFDSETDGCVTVRDRDTMAQERVAID 438

Query: 433 EVINYASHRFS 443
           ++  Y   +  
Sbjct: 439 KLAEYIEAKLE 449


>gi|289427082|ref|ZP_06428798.1| glycine--tRNA ligase [Propionibacterium acnes J165]
 gi|289159551|gb|EFD07739.1| glycine--tRNA ligase [Propionibacterium acnes J165]
          Length = 463

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 63/434 (14%), Positives = 132/434 (30%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P G +  +N+           R   + +    +   ++WV SG    +   +    
Sbjct: 34  WDYGPFGVELKENIKRQWWRAMVTRRDDVVGLDSSVILPREVWVASGHVGVFNDPLTECL 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + + M      E        +   S             K +  E R    ++++    
Sbjct: 94  SCHKR-MRADHLQEGHAAKHGIADPDSISLEEVNCPNCGNKGQWTEPRDFNMMLKTYLGP 152

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG---- 204
           ++D          +       F + L    +         G            I      
Sbjct: 153 VEDKSGLHYLRPETAQGIFVNFQNVLTSARKKPPFGIAQTGKSFRNEITPGNFIFRTREF 212

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V   T E       D           + D++       E+ +     T DV 
Sbjct: 213 EQMEMEFFVEPGTDEEWHQYWIDVRTAWYTDLGINPDNLRHYEHPKEKLSHYSKRTVDVE 272

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F      +     GI     F  G  +++S    + +  A+ K +   +     G 
Sbjct: 273 YKFGFSGSDWGELE---GIANRTDFDLGNHSRHSGKDLSYYDQANNKRYLPYVIEPAAGL 329

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       ++P K +++ +  +          +
Sbjct: 330 TRSLMAFMVDAYTEDEAPNAKGGVDKRTVLKLDPRLSPVKAAVLPLSRNSD-LSPKARDL 388

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ARL +   +V +DD    IG ++   D +G P  + V    + D  V I+ R T  ++ 
Sbjct: 389 AARLREHW-NVDFDDAQA-IGKRYRRQDEIGTPFCITVDFDSLEDDAVTIRERDTMAQQR 446

Query: 429 MSLEEVINYASHRF 442
           +S+++V  Y   + 
Sbjct: 447 VSIDKVEEYLGGKL 460


>gi|225550213|ref|ZP_03771173.1| glycyl-tRNA synthetase [Borrelia burgdorferi 118a]
 gi|225369325|gb|EEG98778.1| glycyl-tRNA synthetase [Borrelia burgdorferi 118a]
          Length = 445

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 62/443 (13%), Positives = 134/443 (30%), Gaps = 37/443 (8%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G + Q S       G + + PLG +   N+     +         +           +
Sbjct: 13  RKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKKEWWKSMV-YLHENIVGLDSAIFMRPE 71

Query: 79  LWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVM-TDIFRSHIKSYRNLPFTFYQ 134
           +W  SG  D +   M+   D   R     I    +          +  +S+  +  T   
Sbjct: 72  IWRASGHVDGFSDSMVDCKDCKSRFRADFIDLSKNCPNCKVGNNFTSPRSFNLMFKTHIG 131

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +      E+  R    +     +      D +         ++  ++             
Sbjct: 132 VVEDSSSEVYLRPETAQG--IFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
              E   +       F+      E   +  ++ M+F I +     D +        Q  A
Sbjct: 190 CEFEQMEMQF-----FVHPKQIDEWFCYWQQNRMNFFIETLKISPDRLRFKAHDSTQL-A 243

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQ 313
            YA  +     +      E + +  RG             + P    +      + +   
Sbjct: 244 HYAKAAFDIEYEFPFGFQEVEGIHNRGNYDLT--QHAKFSNKPKVFEYHDFLTKEKYVPY 301

Query: 314 MGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +     G  R V   +  ++             +     +AP+KI++  +    +   + 
Sbjct: 302 VIETSAGLTRSVLMTLCDAYSEEELSDGDKRIVLRLHPKLAPYKIAIFPLVKKVE-LTEI 360

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +IY  L      +F+DD G  IG ++   D +G P  V +    + D  V ++ R + 
Sbjct: 361 ARRIYMELCD-DFHIFYDDSG-TIGKRYRRQDEIGTPYCVTIDYNTIEDETVTVRERNSM 418

Query: 425 IREDMSLEEVINYASHRFSNNRP 447
            ++ + + ++ +Y      N + 
Sbjct: 419 TQKRIFINDLYSYIKTEILNYKE 441


>gi|18312849|ref|NP_559516.1| threonyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
 gi|22654124|sp|Q8ZWK4|SYT_PYRAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|18160337|gb|AAL63698.1| threonyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
          Length = 608

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 110/345 (31%), Gaps = 39/345 (11%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKD 159
           D  +I           + +  + SY++LPF   +I   +R E       + R R F M D
Sbjct: 277 DTDLILRYAACFQQFAMAKDWVISYKHLPFGMLEIADSYRHEQPGETVLLFRLRRFYMPD 336

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            + F    + +     K+     R   +LG   + +   +     +     +        
Sbjct: 337 LHIFTKDLKEAMEVTYKLHEVIFREIGKLGRTYVSLYNVTEGFYKNHRDYLV-------- 388

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                          E    +    L  ++      +    + H   + D L   + ++ 
Sbjct: 389 ---------------ELARREGKPILVRVLPGQKYYWVLNVEFH---IVDELGRPREIAT 430

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKG 337
             I+VG+   FG          +   + +  Y  +    I     R + AV ++    + 
Sbjct: 431 FQIDVGNAQRFG--------IKYVDENNQIKYPVIIHTAILGSVERYLYAVFDTMAKMEK 482

Query: 338 IIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                 +  +   +   +    +        I   L   G  V  DD  E +  +   A+
Sbjct: 483 EGKVPRLPTWLSPVQVRVIPVSKENLKYAISIADVLEAEGIRVDIDDREETLSKKIRDAE 542

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
               P  V+VGSK  ++  + ++ R  G +  + LEE++      
Sbjct: 543 TSWIPYIVVVGSKEEAEGVIAVRERGGG-QYKIRLEELVKKLKDE 586


>gi|291541481|emb|CBL14591.1| glycyl-tRNA synthetase [Ruminococcus bromii L2-63]
          Length = 458

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 57/437 (13%), Positives = 132/437 (30%), Gaps = 47/437 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG    +N+     ++  +     +      L +   WV SG    +   ++   
Sbjct: 35  WDYGPLGVTLKNNIKNAWLKKFVQQNKYNVGLDSAILMNPQTWVASGHLGGFSDPLMDCK 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +   +        +   T++       + N     Y  + +       +      R+F +
Sbjct: 95  ECKTRHRADNLIEDFDGTNVAG-----WTNEEMMNYIKEKEIPCPNCGKHNFTDIRQFNL 149

Query: 158 KDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRAESG 200
                  +T +     Y                             ++G           
Sbjct: 150 MFKTFQGVTEDSKNEIYLRPETAQGIFVNFSNIQRTSRKKVPFGVAQIGKSFRNEITPGN 209

Query: 201 PIGGDLSH-----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            I           EF     T        + F    + S N   +++   +   E+    
Sbjct: 210 FIFRVREFEQMELEFFCKPGTDLEWFEYWRGFCRDWLYSLNIKEENLRLRDHSKEEL-CF 268

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y+  +            E   V+ R           +K S      F     + +   + 
Sbjct: 269 YSKATTDFEYLFPFGWGELWGVADRTDYDLTQH---SKTSGKTLEYFDPTTNEKYIPYVI 325

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIW---------PDSVAPFKISLINIKAHDQVCRDACE 366
              +G  R+  A++  ++D + I             ++AP+K  ++ +        +   
Sbjct: 326 EPSLGVERLFLALVVEAYDEEVIDEKDTRVVLRLHPTLAPYKACVLPLSKK---LNEQAG 382

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +Y +L        +DD G  IG ++   D +G P  +    + V D  V ++ R T  +
Sbjct: 383 NVYEQL-SADFMTDYDDAG-SIGKRYRRQDEIGTPFCITYDFESVDDGCVTVRDRDTMQQ 440

Query: 427 EDMSLEEVINYASHRFS 443
           E ++++++ +Y + +  
Sbjct: 441 ERVAIDKLNDYIAEKIK 457


>gi|332297427|ref|YP_004439349.1| glycyl-tRNA synthetase [Treponema brennaborense DSM 12168]
 gi|332180530|gb|AEE16218.1| glycyl-tRNA synthetase [Treponema brennaborense DSM 12168]
          Length = 448

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 50/443 (11%), Positives = 118/443 (26%), Gaps = 37/443 (8%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADL 79
           R G + Q S       G + + P+G +   N+     +E  +     + +    L    +
Sbjct: 17  RRGFVFQSSEIYGGQAGAWDYGPVGIELKKNIQNAWWKEMTQLHDNIVGLDAAILMHPRV 76

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG   ++   ++       +          +      +               +   
Sbjct: 77  WEASGHVANFSDPLVDCKQCKMRFRADTMDQAALAAKKCPNCGGELTEPRAFNLMFKT-- 134

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
                       S   +     +        K+      +       ++G          
Sbjct: 135 -----HIGPAEDSASVVYLRPETAQGIYVNYKNIIQSNRMKVPFGIAQVGKAFRNEIVTK 189

Query: 200 GPIGGDLSHEFIVLA---DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             I      E + +      GE   +            +              E+  A Y
Sbjct: 190 NFIFRTCEFEQMEMQFFVKPGEDDKWFEYWREQRWSFYKKYGIHMEKLRWYHHEKL-AHY 248

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           A  +     +      E + V  R                 M    +    + +   +  
Sbjct: 249 AKDAYDIEYEFPMGFQELEGVHNRTNFDLTRH--TEFSGKDMQYIDQDNGNEKYIPYIIE 306

Query: 317 YGIGAMRVVAAVIESSHDGKGI-------------IWPDSVAPFKISLINIKAHDQVCRD 363
              G  R +   +  +++ + +              +   +AP  ++++ +   D    +
Sbjct: 307 TSAGLTRNLLMFLCDAYEEQNVAAAGAPEDYRTVLHFHPKIAPVTVAILPLMKKD-GLAE 365

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++I A L +      +D  G  IG ++   D +G P  + V      D  V I+ R +
Sbjct: 366 LAQEIRAELQEE-FVTDYDQSG-TIGKRYRRQDEIGTPFCITVDHDTKEDGTVTIRFRDS 423

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
             +  +   E+++       N +
Sbjct: 424 MEQIRVPRSELVSRLHQEIKNYK 446


>gi|219684604|ref|ZP_03539547.1| glycyl-tRNA synthetase [Borrelia garinii PBr]
 gi|219671966|gb|EED29020.1| glycyl-tRNA synthetase [Borrelia garinii PBr]
          Length = 445

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 60/439 (13%), Positives = 129/439 (29%), Gaps = 29/439 (6%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G + Q S       G + + PLG +   N+ +   +         +           +
Sbjct: 13  RKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKSEWWKSMV-YLHENIVGLDSAIFMRPE 71

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           +W  SG  D +   M+   D                    +          F        
Sbjct: 72  IWRASGHIDGFSDSMVDCKDC-KSRFRADFVDLSKNCPNCKVGNNFTSPRSFNLMFKTHI 130

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
              E       +R      +  +        S        ++ +    R  + +      
Sbjct: 131 GVVEDSSNEIYLR--PETAQGIFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFR 188

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +          F+      E   +  ++ M+F I +     D +        Q  A YA 
Sbjct: 189 TCEFEQMEMQFFVHPKQIDEWFCYWQQNRMNFFIETLKIRPDKLRFKAHDSTQL-AHYAK 247

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSY 317
           ++     +      E + +  RG             + P    +      + +   +   
Sbjct: 248 SAFDIEYEFPFGFQEVEGIHNRGNYDLT--QHSKFSNNPKIFEYHDLLTKERYVPHVIET 305

Query: 318 GIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
             G  R V   + +++             +     +AP+KI++  +    ++  +   +I
Sbjct: 306 SAGLTRSVLMTLCNAYSEEELSDGDKRIVLRLHPKLAPYKIAIFPLVKKVELV-EIARRI 364

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L      +F+DD G  IG ++   D +G P  V V    + D  V ++ R    ++ 
Sbjct: 365 YMELCD-DFHIFYDDSG-TIGKRYRRQDEIGTPYCVTVDYNTIEDETVTVRERNNMTQKR 422

Query: 429 MSLEEVINYASHRFSNNRP 447
           + + ++ +Y      N + 
Sbjct: 423 IFINDLYSYIKTEILNYKE 441


>gi|225552307|ref|ZP_03773247.1| glycyl-tRNA synthetase [Borrelia sp. SV1]
 gi|225371305|gb|EEH00735.1| glycyl-tRNA synthetase [Borrelia sp. SV1]
          Length = 449

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/443 (13%), Positives = 134/443 (30%), Gaps = 37/443 (8%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G + Q S       G + + PLG +   N+     +         +           +
Sbjct: 13  RKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKKEWWKSMV-YLHENIVGLDSAIFMRPE 71

Query: 79  LWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVM-TDIFRSHIKSYRNLPFTFYQ 134
           +W  SG  D +   M+   D   R     +    +          +  +S+  +  T   
Sbjct: 72  IWRASGHVDGFSDSMVDCKDCKSRFRADFVDLSKNCPNCKVGNNFTSPRSFNLMFKTHIG 131

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +      E+  R    +     +      D +         ++  ++             
Sbjct: 132 VVEDSSSEVYLRPETAQG--IFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
              E   +       F+      E   +  ++ M+F I +     D +        Q  A
Sbjct: 190 CEFEQMEMQF-----FVHPKQIDEWFCYWQQNRMNFFIETLKISPDRLRFKAHDSTQL-A 243

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQ 313
            YA  +     +      E + +  RG             + P    +      + +   
Sbjct: 244 HYAKAAFDIEYEFPFGFQEVEGIHNRGNYDLT--QHAKFSNKPKVFEYHDLLTKEKYVPY 301

Query: 314 MGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +     G  R V   +  ++             +     +AP+KI++  +    +   + 
Sbjct: 302 VIETSAGLTRSVLMTLCDAYSEEELSDGDKRIVLRLHPKLAPYKIAIFPLVKKVE-LTEI 360

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +IY  L      +F+DD G  IG ++   D +G P  V +    + D  V ++ R + 
Sbjct: 361 ARRIYMELCD-DFHIFYDDSG-TIGKRYRRQDEIGTPYCVTIDYNTIEDETVTVRERNSM 418

Query: 425 IREDMSLEEVINYASHRFSNNRP 447
            ++ + + ++ +Y      N + 
Sbjct: 419 TQKRIFINDLYSYIKTEILNYKE 441


>gi|226307195|ref|YP_002767155.1| glycyl-tRNA synthetase [Rhodococcus erythropolis PR4]
 gi|229493158|ref|ZP_04386950.1| glycyl-tRNA synthetase [Rhodococcus erythropolis SK121]
 gi|226186312|dbj|BAH34416.1| glycyl-tRNA synthetase [Rhodococcus erythropolis PR4]
 gi|229319889|gb|EEN85718.1| glycyl-tRNA synthetase [Rhodococcus erythropolis SK121]
          Length = 463

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 60/433 (13%), Positives = 132/433 (30%), Gaps = 36/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +R   + +    +   ++WV SG    +     E L
Sbjct: 34  WDYGPLGVELKENIKRQWWRNMVTSREDVVGLDSSVILPREVWVASGHVGVFNDPLVECL 93

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP--------- 145
               R+ +  +     E+   D            P      Q     +            
Sbjct: 94  NCHKRHRQDHLQEAYAEKKKLDNPDDVSMDVIGCPDCGTVGQWTEPRDFNMMLKTYLGPV 153

Query: 146 --RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G+   R    +  +        +        +  +    R  +        +    
Sbjct: 154 ESEEGMHYLRPETAQGIFVNFANVLTTSRKKPPFGIGQIGKSFRNEITPGNFIFRTREFE 213

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                 F+   +  +   +     +D+       + D++       E+ +     T+D+ 
Sbjct: 214 QMEMEFFVKPGEDEQWHQYWIDYRLDWYT-GLGINKDNLRLYEHAPEKLSHYSKGTTDIE 272

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               F      +     GI     F   T  K+S      +    G+ +   +     G 
Sbjct: 273 YRFHFQGSEWGELE---GIANRTDFDLSTHSKHSGTELNYYDQTTGERYTPYVIEPAAGL 329

Query: 322 MRVVAAVIESSHDGKGIIWPD------SVAPFKISLINIKA------HDQVCRDACEKIY 369
            R + A +  ++               +V      L  +KA       +       + + 
Sbjct: 330 TRSLMAFLVDAYTEDEAPNSKGGVDKRTVLRLDRRLAPVKAAVLPLSRNADLTPKAKDLA 389

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A+L +   +V +DD G  IG ++   D +G P  + V    + D  V ++ R +  +E +
Sbjct: 390 AQLRQNW-NVEFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLEDQAVTVRERDSMAQERV 447

Query: 430 SLEEVINYASHRF 442
           +L++V +Y + R 
Sbjct: 448 ALDQVESYLAARL 460


>gi|185178982|ref|ZP_02964737.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188518276|ref|ZP_03003799.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524364|ref|ZP_03004396.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867791|ref|ZP_03079791.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273755|ref|ZP_03206289.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209554280|ref|YP_002284879.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225551615|ref|ZP_03772561.1| proline--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|259511630|sp|B5ZBT9|SYP_UREU1 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|184209266|gb|EDU06309.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188998019|gb|EDU67116.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659957|gb|EDX53337.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660488|gb|EDX53745.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198249510|gb|EDY74292.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209541781|gb|ACI60010.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225379430|gb|EEH01795.1| proline--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 472

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 62/411 (15%), Positives = 138/411 (33%), Gaps = 61/411 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRL 96
           G+  + P      + +   I  E  + G   +++PTL   ++   E    + +  E+  +
Sbjct: 36  GMMVFQPNAWAIWEAIKNQIDLEFKKHGVRNLAMPTLIPLSEFQKEKDHIEGFAPELFMV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               DK +                                                    
Sbjct: 96  NQIGDKKLDNPYA----------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + +  +  SY  +  +       MRAE        + EF      
Sbjct: 109 -----IRPTSEILFCNYFKNIVNSYNDLPIKNNQWCSVMRAEKTTRPFLRNAEFHWQ--- 160

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
               +F S+   D    +    + D +     +                +   ++ E   
Sbjct: 161 ELHAIFASEHEADEFAKTILDVYTDFVQNYLCIPVIKGLKTPWERFAGAQKTYTI-EAMM 219

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+G D + HYV   S G+ + R++ A+I    D +
Sbjct: 220 QDGQALQSATSHYLGQFFAKAYDIKFQGQDNQMHYVHQMSAGL-STRIIGALIMVHADDQ 278

Query: 337 GIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           G+I P  +A  +I++++I    +       E+I   LS     +F D   + +G + A  
Sbjct: 279 GLILPPDIAFNQIAILSIFANKNPQLLTISEQIRNELSD--YRLFEDHSDKGVGYKLAQQ 336

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ G P+ ++VG K +++ +V +  R T  + +++L ++ +       + +
Sbjct: 337 EIEGTPICILVGVKELANQQVVLVRRDTHEKINVNLIDLKSTIKKLLLDIK 387


>gi|171920903|ref|ZP_02932054.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|171903119|gb|EDT49408.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
          Length = 472

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 62/411 (15%), Positives = 138/411 (33%), Gaps = 61/411 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRL 96
           G+  + P      + +   I  E  + G   +++PTL   ++   E    + +  E+  +
Sbjct: 36  GMMVFQPNAWAIWEAIKNQIDLEFKKHGVRNLAMPTLIPLSEFQKEKDHIEGFAPELFMV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               DK +                                                    
Sbjct: 96  NQIGDKKLDNPYA----------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + +  +  SY  +  +       MRAE        + EF      
Sbjct: 109 -----IRPTSEILFCNYFKNIVNSYNDLPIKNNQWCSVMRAEKTTRPFLRNAEFHWQ--- 160

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
               +F S+   D    +    + D +     +                +   ++ E   
Sbjct: 161 ELHAIFASEHEADEFAKTILDVYTDFVQNYLCIPVIKGLKTPWERFAGAQKTYTI-EAMM 219

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+G D + HYV   S G+ + R++ A+I    D +
Sbjct: 220 QDGQALQSATSHYLGQFFAKAYDIKFQGQDNQMHYVHQMSAGL-STRIIGALIMVHADDQ 278

Query: 337 GIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           G+I P  +A  +I++++I    +       E+I   LS     +F D   + +G + A  
Sbjct: 279 GLILPPDIAFNQIAILSIFANKNPQLLTISEQIRNELSD--YRLFEDHSDKGVGYKLAQQ 336

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ G P+ ++VG K +++ +V +  R T  + +++L ++ +       + +
Sbjct: 337 EIEGTPICILVGVKELANQQVVLVRRDTHEKINVNLIDLKSTIKKLLLDIK 387


>gi|145595945|ref|YP_001160242.1| glycyl-tRNA synthetase [Salinispora tropica CNB-440]
 gi|145305282|gb|ABP55864.1| glycyl-tRNA synthetase [Salinispora tropica CNB-440]
          Length = 459

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 69/432 (15%), Positives = 127/432 (29%), Gaps = 37/432 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV           R   + +    + + D+W  SG  D++   +    
Sbjct: 33  WDYGPLGVELKENVRRQWWRSMVQQRDDVVGLDSAVILARDVWAASGHLDAFVDPL---T 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +       +   H E   +       +                 E R   G+M++    +
Sbjct: 90  ECQSCHKRFRADHLEEAYEAKHGRPPASLAELNCPNCGNKGTFTEPRMFNGLMKTHLGPV 149

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG----- 204
           +           +       + +   +  +         G            I       
Sbjct: 150 ESDEGLHYLRPETAQGIFVNYKNVEMVARKKPPFGIAQTGKSFRNEITPGNFIFRTREFE 209

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +  EF V   T E                      ++       E+ +     T D+  
Sbjct: 210 QMEMEFFVEPGTDEGWHEYWLAERWNWYLDLGLSERNLRRYEHPQEKLSHYSKRTVDIEY 269

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F      +     GI     F   T  K+S    + F  A G+     +     G  
Sbjct: 270 RFQF---GGTEFAELEGIANRTDFDLSTHSKHSGVDLSYFDQARGERWVPYVIEPAAGLT 326

Query: 323 RVVAAVIESSHDGKGIIWPD------SVAPFKISLINIK------AHDQVCRDACEKIYA 370
           R V A +  ++D              +V  F   L  +K      + ++       K+  
Sbjct: 327 RAVLAFLLEAYDEDEAPNTKGGVDKRTVMRFDPRLAPVKVAVLPLSRNEALSPKARKLAT 386

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K    V +DD    IG ++   D +G P  V V    + D  V +++R T  +E +S
Sbjct: 387 DLRKRWV-VEFDDSQA-IGRRYRRQDEIGTPYCVTVDFDTLDDDAVTVRNRDTMAQERIS 444

Query: 431 LEEVINYASHRF 442
           L++V  Y   R 
Sbjct: 445 LDQVERYLIERL 456


>gi|62078771|ref|NP_001014042.1| probable threonyl-tRNA synthetase 2, cytoplasmic [Rattus
           norvegicus]
 gi|54035500|gb|AAH83878.1| Threonyl-tRNA synthetase-like 2 [Rattus norvegicus]
          Length = 553

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 4/159 (2%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H  S G   +LP G    + +   IREE ++    E+ 
Sbjct: 383 EEARSRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFIYNTLMDFIREEYHKRNFTEVL 440

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + ++ LW  SG +  Y   M    D         P +      +F    +S+R +P 
Sbjct: 441 SPNMYNSKLWETSGHWQHYSNNMFTF-DIEKDTFALKPMNCPGHCLMFAHRPRSWREMPV 499

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPE 168
            F    +  R+EL     G+ R R F   DA+ F +  +
Sbjct: 500 RFADFGVLHRNELSGTLTGLTRVRRFQQDDAHIFCMVEQ 538


>gi|257051518|ref|YP_003129351.1| threonyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
 gi|256690281|gb|ACV10618.1| threonyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
          Length = 620

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 67/405 (16%), Positives = 122/405 (30%), Gaps = 40/405 (9%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           W P G+   D +   + +     G + +  P +              +G+   R  +  D
Sbjct: 231 WYPRGKLVRDALMEYVNDLVVDYGGMPVETPIMYDLGARSIDEHAGKFGERQYRF-ESGD 289

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF--RDELRPRFGVMRSREFLMKD 159
           + M+           I R    S  +LP   Y++      R++     G+ R R F M D
Sbjct: 290 RRMMLRFAACFGQFSIMRDMHISVNDLPLRVYEMSTYSFRREQRGEVTGLKRLRAFTMPD 349

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            ++   + E ++    K     L+    L L   P    +         EF    +    
Sbjct: 350 MHTATESMEQAREELRKQAELALQTSEDLDLNYEPAIRMT--------REFYEDNEAWVE 401

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
            V       +   PS      +     S    + A              D L        
Sbjct: 402 DVV-----AELGKPSLIEIIPERHHYWSAKIDFAA-------------IDGLGRPIENPT 443

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGI 338
             I+V        + +      +       H   +     G   RV+AA++E +      
Sbjct: 444 VQIDV--------ESAERFDIEYTDGTDSHHPPILHYSPSGGIERVLAALLEDTASMDTP 495

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             P  ++P ++  I +        D CE +   L         DD  E +G + A A+  
Sbjct: 496 QLPTWLSPTQVRFIPVNP--DSHLDYCEGLVDELEDADVRADIDDRDESVGKRIAKAETD 553

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             P  V+VG + +    + +  R      D++  E+         
Sbjct: 554 WVPYYVVVGDREIEGETIGVNVRADDDEIDLTPAELREAVLDDVD 598


>gi|188024082|ref|ZP_02996824.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188019126|gb|EDU57166.1| prolyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
          Length = 472

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 62/411 (15%), Positives = 138/411 (33%), Gaps = 61/411 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRL 96
           G+  + P      + +   I  E  + G   +++PTL   ++   E    + +  E+  +
Sbjct: 36  GMMVFQPNAWAIWEAIKNQIDLEFKKHGVRNLAMPTLIPLSEFQKEKDHIEGFAPELFMV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               DK +                                                    
Sbjct: 96  NQIGDKKLDNPYA----------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + +  +  SY  +  +       MRAE        + EF      
Sbjct: 109 -----IRPTSEILFCNYFKNIVNSYNDLPIKNNQWCSVMRAEKTTRPFLRNAEFHWQ--- 160

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
               +F S+   D    +    + D +     +                +   ++ E   
Sbjct: 161 ELHAIFASEHEADEFAKTILDVYTDFVQNYLCIPVIKGLKTPWERFAGAQKTYTI-EAMM 219

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+G D + HYV   S G+ + R++ A+I    D +
Sbjct: 220 QDGQALQSATSHYLGQFFAKAYDIKFQGQDNQMHYVHQMSAGL-STRIIGALIMVHADDQ 278

Query: 337 GIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           G+I P  +A  +I++++I    +       E+I   LS     +F D   + +G + A  
Sbjct: 279 GLILPPDIAFNQIAILSIFANKNPQLLTISEQIRNELSD--YRLFEDHSDKGVGYKLAQQ 336

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ G P+ ++VG K +++ +V +  R T  + +++L ++ +       + +
Sbjct: 337 EIEGTPICILVGVKELANQQVVLVRRDTHEKINVNLIDLKSTIKKLLLDIK 387


>gi|329929336|ref|ZP_08283089.1| proline--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328936705|gb|EGG33148.1| proline--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 485

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 57/414 (13%), Positives = 122/414 (29%), Gaps = 69/414 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   + P G +  +++ A +      TG      P                         
Sbjct: 42  GCIVFKPDGYEIWEHIQAELDRRFKATGHRNAYFPLFIPE-------------------- 81

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
                                           F   + +          +    + E L 
Sbjct: 82  -------------------------------SFFQKEKEHVEGFNPELPWVTEAAGEKLE 110

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           +       +     H Y+K   SY  +   +   +  +R E   +    + EF+      
Sbjct: 111 ERLAIRPTSETMFGHMYSKWIQSYRDLPVLINQWANVVRWEKRTLPFLRTSEFLWQ---- 166

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT-----SDVHNEKLFDSLP 272
                      +    +       +      VE + A          S+     +     
Sbjct: 167 -----EGHTAHETEAEARGETMQMLDIYQQFVEDYLAIPVIKGQKTPSEKFAGAVDTFSI 221

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      R ++ G   Y GT +S      +   +    Y    S+G+ + R++ ++I   
Sbjct: 222 EAMMKDGRAVQAGTSHYMGTNFSQAFDIQYLNRENTLEYAHTTSWGV-STRLIGSLIMVH 280

Query: 333 HDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIG 389
            D +G++ P  VAP ++ +I I             ++++  L   G  V  DD    + G
Sbjct: 281 GDDRGLVLPPKVAPTQVIMIPIGPPKTRDAVVGRTDELFRELKSAGIRVRVDDNPDVRPG 340

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +F   ++ G P+++ +G + + +    +  R+TG ++ +    +I        
Sbjct: 341 WKFNEYEMRGVPVRLEIGPRDMENGVCVLVSRITGEKKVVEQANLIQEVQSMLE 394


>gi|15594716|ref|NP_212505.1| glycyl-tRNA synthetase [Borrelia burgdorferi B31]
 gi|195941279|ref|ZP_03086661.1| glycyl-tRNA synthetase [Borrelia burgdorferi 80a]
 gi|216264354|ref|ZP_03436346.1| glycyl-tRNA synthetase [Borrelia burgdorferi 156a]
 gi|221217806|ref|ZP_03589274.1| glycyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|224533132|ref|ZP_03673732.1| glycine--tRNA ligase [Borrelia burgdorferi WI91-23]
 gi|224533837|ref|ZP_03674425.1| glycyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
 gi|225549029|ref|ZP_03770004.1| glycyl-tRNA synthetase [Borrelia burgdorferi 94a]
 gi|6226178|sp|O51344|SYG_BORBU RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|2688266|gb|AAC66743.1| glycyl-tRNA synthetase (glyS) [Borrelia burgdorferi B31]
 gi|215980827|gb|EEC21634.1| glycyl-tRNA synthetase [Borrelia burgdorferi 156a]
 gi|221192483|gb|EEE18702.1| glycyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|224511859|gb|EEF82260.1| glycine--tRNA ligase [Borrelia burgdorferi WI91-23]
 gi|224513130|gb|EEF83493.1| glycyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
 gi|225370255|gb|EEG99693.1| glycyl-tRNA synthetase [Borrelia burgdorferi 94a]
 gi|312148086|gb|ADQ30745.1| glycyl-tRNA synthetase [Borrelia burgdorferi JD1]
 gi|312149335|gb|ADQ29406.1| glycyl-tRNA synthetase [Borrelia burgdorferi N40]
          Length = 445

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 62/443 (13%), Positives = 134/443 (30%), Gaps = 37/443 (8%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G + Q S       G + + PLG +   N+     +         +           +
Sbjct: 13  RKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKKEWWKSMV-YLHENIVGLDSAIFMRPE 71

Query: 79  LWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVM-TDIFRSHIKSYRNLPFTFYQ 134
           +W  SG  D +   M+   D   R     I    +          +  +S+  +  T   
Sbjct: 72  IWRASGHVDGFSDSMVDCKDCKSRFRADFIDLSKNCPNCKVGNNFTSPRSFNLMFKTHIG 131

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +      E+  R    +     +      D +         ++  ++             
Sbjct: 132 VVEDSSSEVYLRPETAQG--IFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
              E   +       F+      E   +  ++ M+F I +     D +        Q  A
Sbjct: 190 CEFEQMEMQF-----FVHPKQIDEWFCYWQQNRMNFFIETLKISPDRLRFKAHDSTQL-A 243

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQ 313
            YA  +     +      E + +  RG             + P    +      + +   
Sbjct: 244 HYAKAAFDIEYEFPFGFQEVEGIHNRGNYDLT--QHAKFSNKPKVFEYHDLLTKEKYVPY 301

Query: 314 MGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +     G  R V   +  ++             +     +AP+KI++  +    +   + 
Sbjct: 302 VIETSAGLTRSVLMTLCDAYSEEELSDGDKRIVLRLHPKLAPYKIAIFPLVKKVE-LTEI 360

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +IY  L      +F+DD G  IG ++   D +G P  V +    + D  V ++ R + 
Sbjct: 361 ARRIYMELCD-DFHIFYDDSG-TIGKRYRRQDEIGTPYCVTIDYNTIEDETVTVRERNSM 418

Query: 425 IREDMSLEEVINYASHRFSNNRP 447
            ++ + + ++ +Y      N + 
Sbjct: 419 TQKRIFINDLYSYIKTEILNYKE 441


>gi|229198530|ref|ZP_04325234.1| Histidyl-tRNA synthetase 2 [Bacillus cereus m1293]
 gi|228585033|gb|EEK43147.1| Histidyl-tRNA synthetase 2 [Bacillus cereus m1293]
          Length = 476

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ EK+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYEKVQELLMMMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|219685484|ref|ZP_03540302.1| glycine--tRNA ligase [Borrelia garinii Far04]
 gi|219673040|gb|EED30061.1| glycine--tRNA ligase [Borrelia garinii Far04]
          Length = 445

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 62/443 (13%), Positives = 138/443 (31%), Gaps = 37/443 (8%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G + Q S       G + + PLG +   N+ +   +         +           +
Sbjct: 13  RKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKSEWWKSMV-YLHENIVGLDSAIFMRPE 71

Query: 79  LWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVM-TDIFRSHIKSYRNLPFTFYQ 134
           +W  SG  D +   M+   D   R     +    +          +  +S+  +  T   
Sbjct: 72  IWRASGHIDGFSDSMVDCKDCKSRFRADFVDLSKNCPNCKVGNNFTSPRSFNLMFKTHIG 131

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +      E+  R    +     +      D +         ++  ++             
Sbjct: 132 VVEDSSHEIYLRPETAQG--IFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
              E   +       F+      E   +  ++ M+F I +     D +        Q  A
Sbjct: 190 CEFEQMEMQF-----FVHPKQIDEWFCYWQQNRMNFFIETLKIRPDKLRFKAHDSTQL-A 243

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQ 313
            YA ++     +      E + +  RG             + P    +      + +   
Sbjct: 244 HYAKSAFDIEYEFPFGFQEVEGIHNRGNYDLT--QHSKFSNNPKIFEYHDLLTKERYVPH 301

Query: 314 MGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +     G  R V  ++ +++             +     +AP+KI++  +    ++  + 
Sbjct: 302 VIETSAGLTRSVLMILCNAYSEEELSDGDKRIVLRLHPKLAPYKIAIFPLVKKVELV-EI 360

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +IY  L      +F+DD G  IG ++   D +G P  V V    + D  V ++ R   
Sbjct: 361 ARRIYMELCD-DFHIFYDDSG-TIGKRYRRQDEIGTPYCVTVDYNTIEDETVTVRERNNM 418

Query: 425 IREDMSLEEVINYASHRFSNNRP 447
            ++ + + ++ +Y      N + 
Sbjct: 419 TQKRIFINDLYSYIKTEILNYKE 441


>gi|330469568|ref|YP_004407311.1| glycyl-tRNA synthetase [Verrucosispora maris AB-18-032]
 gi|328812539|gb|AEB46711.1| glycyl-tRNA synthetase [Verrucosispora maris AB-18-032]
          Length = 459

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 69/435 (15%), Positives = 136/435 (31%), Gaps = 43/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     +     R   + +    + + D+W  SG  D++   +    
Sbjct: 33  WDYGPLGVELKENVRRQWWKTMVQQRDDVVGLDSAVILARDVWAASGHLDAFVDPL---T 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +       +   H E           +                 E +   G+M++    +
Sbjct: 90  ECQSCHKRFRADHLEEAYAEKHGKPLASLTELNCPNCGNKGTFTEPKMFNGLMKTFLGPV 149

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD------------ 205
           +              +   +FV+Y  + +    K     A++G    +            
Sbjct: 150 ESDEGLH---YLRPETAQGIFVNYNNVANAARKKPPFGIAQTGKSFRNEITPGNFIFRTR 206

Query: 206 ----LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E                     +++       E+ +     T D
Sbjct: 207 EFEQMEMEFFVEPGTDEQWHEYWLSERWNWYVDLGLSAENMRFYEHPKEKLSHYSKRTVD 266

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     F      +     GI     F   T  K+S    + F     +     +     
Sbjct: 267 IEYRFQFGGSEFAELE---GIANRTDFDLSTHSKHSGVDLSYFDQTKSERWVPYVIEPAA 323

Query: 320 GAMRVVAAVIESSHDGKG------IIWPDSVAPFKISLINIK------AHDQVCRDACEK 367
           G  R V A +  ++D          +   +V  F   L  +K      + ++      + 
Sbjct: 324 GLTRAVLAFLLEAYDVDQAPNAKGKMEERTVMRFDPRLAPVKVAVLPLSRNEALSPKAKD 383

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A+L K    V +DD    IG ++   D +G P  V V    + D+ V I++R T  +E
Sbjct: 384 LAAQLRKRWV-VEFDDSQA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTIRNRDTMAQE 441

Query: 428 DMSLEEVINYASHRF 442
            ++L++V  Y     
Sbjct: 442 RIALDQVERYLIDHL 456


>gi|119026156|ref|YP_910001.1| glycyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765740|dbj|BAF39919.1| glycyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
          Length = 491

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 69/440 (15%), Positives = 132/440 (30%), Gaps = 42/440 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +    +WV SG    +     E L
Sbjct: 33  WDYGPLGVALKDNIKREWWRSMVVTRGDVVGVDTSIILPTPVWVASGHVAVFNDPLVECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R     +     E+    +  + +                   E R    ++R+  
Sbjct: 93  NCHKRQRSDKLEESYAEKHGDKLPENGMADIVCPDCGTRGKWT----EPRDFNMMLRTHL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------LGLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +    +        +G            I    
Sbjct: 149 GPVEDENSLHYLRPETAQGIFVDFKNVMTSSRKKPPFGIANMGKSFRNEITPGNFIFRTR 208

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V     E       D             +++       E+       T D
Sbjct: 209 EFEQMEMEFFVKPGEDEAWHQYWIDARTQWYLDLGVKPENLRHYEHPKEKLAHYSKRTVD 268

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGI 319
           +  +  F      +     GI     F       +S    + F  A G+ +   +     
Sbjct: 269 IEYKFGFQGSDWGELE---GIANRTDFDLSAHAEHSGEDLSYFNQATGEKYVPYVIEPAA 325

Query: 320 GAMRVVAAVIESSHDGKGI-------------IWPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R +   +  ++D                      +AP K +++ +     +     +
Sbjct: 326 GLTRSLMCFLVDAYDVDEAPNTKGGVDKRTVLHLDPRLAPVKAAVLPLSKKPDLQS-VAQ 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+ A L +    + +D+ G  IG ++   D +G PL V V    + D  V I+ R T  +
Sbjct: 385 KLAADLRQNEWMIDYDEAGA-IGRRYRREDEIGTPLCVTVDFDTLDDQAVTIRERDTMQQ 443

Query: 427 EDMSLEEVINYASHRFSNNR 446
           E +SL++V +Y + R    R
Sbjct: 444 ERVSLDKVADYIAERIGEKR 463


>gi|168335374|ref|ZP_02693468.1| glycyl-tRNA synthetase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 460

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 62/435 (14%), Positives = 134/435 (30%), Gaps = 36/435 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +   +   + +      L +  +W  SG    +   ++   
Sbjct: 32  WDYGPLGVELKNNIKRAWWKNFIQKNPLNVGVDCAILMNPAVWKASGHLGGFSDPLMDCK 91

Query: 98  --------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFG 148
                   D+  +  +     EE++       ++ Y                 ++R    
Sbjct: 92  SCKERFRADKIIEDYMKENGVEEIVDGWSNEKMQDYIKENNIECPSCHAHNFTDIRQFNL 151

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESG 200
           + ++ + + +D+ +       +       F +  R   +         G           
Sbjct: 152 MFKTFQGVTEDSKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITPGN 211

Query: 201 PIGGDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            I      E     F     T        K+     + +   D   I   +   E+ +  
Sbjct: 212 FIFRTREFEQMELEFFCKPGTELEWFVTWKNICKSWLLNLGIDEKSIRMRDHAKEELSHY 271

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             ATSD+   K      E   +++R            ++S      F     + +     
Sbjct: 272 SNATSDI-EFKFPFGWGELWGIASRTDYDLKQH---MEHSGEDMNYFDPTTNEKYIPYCI 327

Query: 316 SYGIGAMRVVAAVIESSH------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              +GA RV  A +  ++      DG                  I    +   +    IY
Sbjct: 328 EPSLGADRVTLAFLCEAYCEESLEDGDSRNIFKFHPALAPVKAAILPLSKKLSEQALNIY 387

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             LS    +V +D+ G  IG ++   D +G P  +        D+ V I+ R +  +E +
Sbjct: 388 NMLSDH-FNVEYDEAG-SIGKRYRRQDEIGTPFCITYDFDSKDDNSVTIRDRDSMKQERI 445

Query: 430 SLEEVINYASHRFSN 444
           ++ E++ Y + +  N
Sbjct: 446 NIXEILKYITKKIDN 460


>gi|42783532|ref|NP_980779.1| histidyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|206975990|ref|ZP_03236900.1| histidyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217961893|ref|YP_002340463.1| histidyl-tRNA synthetase [Bacillus cereus AH187]
 gi|222097847|ref|YP_002531904.1| histidyl-tRNA synthetase [Bacillus cereus Q1]
 gi|54039678|sp|P62370|SYH2_BACC1 RecName: Full=Histidyl-tRNA synthetase 2; AltName:
           Full=Histidine--tRNA ligase 2; Short=HisRS 2
 gi|42739461|gb|AAS43387.1| histidyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|206745742|gb|EDZ57139.1| histidyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217063931|gb|ACJ78181.1| histidyl-tRNA synthetase [Bacillus cereus AH187]
 gi|221241905|gb|ACM14615.1| histidyl-tRNA synthetase [Bacillus cereus Q1]
          Length = 423

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 13  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 72

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 73  ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 130 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 188

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ EK+ + L     
Sbjct: 189 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYEKVQELLTMMDV 248

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 249 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 308

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 309 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 369 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 422


>gi|218782927|ref|YP_002434245.1| prolyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
 gi|218764311|gb|ACL06777.1| Prolyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
          Length = 505

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 140/438 (31%), Gaps = 89/438 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + + A +      TG      P       L  E+   + +  E   +
Sbjct: 38  GCMVIKPWGYAVWEKIVANLDRMFKETGVKNAYFPLFIPLRFLQKEAKHVEGFATECAVV 97

Query: 97  ADRN---------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
                               + +I  PT E ++ D F   + SYR+LP    Q     R 
Sbjct: 98  THHRLEKGPDGNLVPAGELTEPLIVRPTSETIIGDSFSRWVSSYRDLPILLNQWANVVRW 157

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E+RPR   +R+ EFL ++ ++   T E +      M   Y                    
Sbjct: 158 EMRPRV-FLRTAEFLWQEGHTVHATSEEAYERTEMMLNVY-------------------- 196

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
              D   EF+ +                            +    S  E++         
Sbjct: 197 --ADFVEEFLAM--------------------------PVLRGAKSPAERFPG------- 221

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                +     E      + ++ G   + G  +++     F+ A+GK+ Y    S+G  +
Sbjct: 222 ----AVDTLCIEAMMQDRKALQAGTSHFLGQNFAVASEIKFQSAEGKEEYAWTTSWGA-S 276

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGC- 377
            R++  +I    D  G++ P  +AP ++ L+ I   ++      D    +   L  +   
Sbjct: 277 TRLMGGLIMVHSDDDGLVLPPRIAPAQVVLMPIIKKEETRQAVMDYTNSLADELRALDFH 336

Query: 378 ----DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT--GIREDMSL 431
                V  DD   + G +       G P++V +G + +  + V +  R T    +E M  
Sbjct: 337 GEKLSVEIDDKD-KPG-RAWDWIKKGVPIRVEIGPRDMEKNAVFMGRRDTPGHKKESMDR 394

Query: 432 EEVINYASHRFSNNRPVL 449
            + +        +    L
Sbjct: 395 SDFVAKVVDMLDDMTQKL 412


>gi|57234403|ref|YP_181519.1| glycyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
 gi|57224851|gb|AAW39908.1| glycyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
          Length = 433

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 66/439 (15%), Positives = 126/439 (28%), Gaps = 44/439 (10%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G I   S    G+   + + PLG +   NV          +R   + +    +    +
Sbjct: 10  RRGFIFPSSEIYGGLNSCWDYGPLGVELKRNVKEAWWRYMVRDRDDVVGLDASIIMHPRV 69

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG    +   M+   +            E           +S     F         
Sbjct: 70  WEASGHVAGFSDPMVDCKNC-KMRWRPTDLAEPKCPACGGELTESR---QFNLMFKTFMG 125

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
             E             +     +        ++  N           ++G          
Sbjct: 126 PVEEAAN--------IVYLRPETAQGIFVNFENVLNTTRKKLPFGIAQIGKSFRNEITTG 177

Query: 200 GPIGGDLSHEFIV-------LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             I      E +         AD    + +       +     N    + + L +     
Sbjct: 178 NFIFRSREFEQMELEYFVKPGADDACLEEWTQYRLNWYKNLGMN---PENLRLRAHRSDE 234

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A YA               E + ++ R           +KYS      F     +    
Sbjct: 235 LAHYAKGCYDVEYNFPMGWSELEGIANRRDFDLTQH---SKYSGKALEYFDEETKEHFIP 291

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
            +     G  R   A +  ++  +              ++AP+KI+++ +    ++  D 
Sbjct: 292 YVIEPSAGVERSTLAFLIDAYAEEPDKDEIRTVLHLHPALAPYKIAVLPLSKK-EILSDY 350

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             KIYA L K    V +DD  + IG ++   D +G P  V V  + + D  V I+ R + 
Sbjct: 351 ARKIYADLRKCWM-VAYDDS-QSIGRRYRRQDEIGTPYCVTVDFQSLEDGMVTIRDRDSM 408

Query: 425 IREDMSLEEVINYASHRFS 443
            +  + + E+    + + S
Sbjct: 409 DQIRVKVSELSCILAAKLS 427


>gi|255024838|ref|ZP_05296824.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J1-208]
          Length = 170

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 2/145 (1%)

Query: 261 DVHNEKLFDSLPENKRVSA--RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   ++ D  P+ + V     GIEVGHIF  GTKYS  M+AT    +G+   + MG YG
Sbjct: 26  DLRMIQVGDLSPDGQGVIKFAEGIEVGHIFKLGTKYSQAMNATILDENGRAQPIIMGCYG 85

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG   +++ + E S+D  G +W   ++PF + LI +    +      E +Y  L   G  
Sbjct: 86  IGVSXILSTIAEQSNDENGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYTSLQDAGFS 145

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQ 403
           V  DD  E+ G +FA ADL+G P++
Sbjct: 146 VLIDDRAERAGVKFADADLIGLPIR 170


>gi|289705793|ref|ZP_06502176.1| glycine--tRNA ligase [Micrococcus luteus SK58]
 gi|289557509|gb|EFD50817.1| glycine--tRNA ligase [Micrococcus luteus SK58]
          Length = 460

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 66/460 (14%), Positives = 146/460 (31%), Gaps = 62/460 (13%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNA-----IIREEQNRTGAIEMSVPTLQS 76
           R G + Q      G    + + PLG +  +N+ A      +R  ++  G   +    +  
Sbjct: 16  RRGFVFQAGEIYGGSRSAWDYGPLGVELKENIKAEWWKTFVRSREDMVG---LDSSIILP 72

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +W  SG  +++   ++     + +                 +   +    P    Q  
Sbjct: 73  RAVWEASGHVETFTDPLVECTQCHRRHRQDHLLEAFEAKKGRPAEGMAEIVCPDCGTQGA 132

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH---------- 186
                E +   G++++    + +          +       F++ L              
Sbjct: 133 WT---EPQLFSGLVKTYLGPVDNEEGLHYMRPETAQGIFVNFLNVLGAARKKPPFGIGQI 189

Query: 187 ----RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
               R  +        +          F+  A+ G+      +D  D         F D+
Sbjct: 190 GKAFRNEITPGNFIFRTREFEQMEIEYFVPPAEAGQHFDRWVEDCWD--------WFIDL 241

Query: 243 ISLNSIVEQWTAP-----YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYS 295
               + + ++  P     + + + +  E  F     +      GI     +  G  T +S
Sbjct: 242 GIDPANLRKFDVPADERAHYSDATIDLEYDFGFTGGDGWGELMGIANRTDYDLGRHTAHS 301

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPD 342
                 F  A+ + +   +     G  R + A +  ++                      
Sbjct: 302 GTKMQYFDQANNEHYTPYVIEPSFGLTRAMMAFLVDAYAEDEAPNAKGGVDVRTVLKLDP 361

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            +AP K +++ +    ++   A + + A L  +  ++  DD G  IG ++   D +G P 
Sbjct: 362 RLAPVKAAVLPLSKKPELQ-PATQSLAAELRTLW-NIETDDSGA-IGRRYRRQDEIGTPF 418

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + V    + D  V I+ R T  +E ++L +V +Y   R 
Sbjct: 419 CITVDFDTLEDQAVTIRERDTMAQERVALSQVKSYLLERL 458


>gi|229175078|ref|ZP_04302595.1| Histidyl-tRNA synthetase 2 [Bacillus cereus MM3]
 gi|228608374|gb|EEK65679.1| Histidyl-tRNA synthetase 2 [Bacillus cereus MM3]
          Length = 476

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGSVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ +K+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|223889046|ref|ZP_03623637.1| glycyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|223885862|gb|EEF56961.1| glycyl-tRNA synthetase [Borrelia burgdorferi 64b]
          Length = 445

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 62/443 (13%), Positives = 132/443 (29%), Gaps = 37/443 (8%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G + Q S       G + + PLG +   N+     +         +           +
Sbjct: 13  RKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKKEWWKSMV-YLHENIVGLDSAIFMRPE 71

Query: 79  LWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVM-TDIFRSHIKSYRNLPFTFYQ 134
           +W  SG  D +   M+   D   R     I    +          +  +S+  +  T   
Sbjct: 72  IWRASGHVDGFSDSMVDCKDCKSRFRADFIDLSKNCPNCKVGNNFTSPRSFNLMFKTHIG 131

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +      E+  R    +     +      D +         ++  ++             
Sbjct: 132 VVEDSSSEVYLRPETAQG--IFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
              E   +       F+      E   +  ++ M+F I +     D +        Q  A
Sbjct: 190 CEFEQMEMQF-----FVHPKQIDEWFCYWQQNRMNFFIETLKISPDRLRFKAHDSTQL-A 243

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQ 313
            YA  +     +      E + +  RG             + P    +        +   
Sbjct: 244 HYAKAAFDIEYEFPFGFQEVEGIHNRGNYDLT--QHAKFSNKPKVFEYHDLLTKDKYVPY 301

Query: 314 MGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +     G  R V   +  ++             +     +AP+KI++  +    +   + 
Sbjct: 302 VIETSAGLTRSVLMTLCDAYSEEELSDGDKRIVLRLHPKLAPYKIAIFPLVKKVE-LTEI 360

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +IY  L      +F+DD G  IG ++   D +G P  V +    + D  V ++ R   
Sbjct: 361 ARRIYMELCD-DFHIFYDDSG-TIGKRYRRQDEIGTPYCVTIDYNTIEDETVTVRERNNM 418

Query: 425 IREDMSLEEVINYASHRFSNNRP 447
            ++ + + ++ +Y      N + 
Sbjct: 419 TQKRIFINDLYSYIKTEILNYKE 441


>gi|296140437|ref|YP_003647680.1| glycyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
 gi|296028571|gb|ADG79341.1| glycyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
          Length = 478

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 66/436 (15%), Positives = 131/436 (30%), Gaps = 38/436 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +R   + +    +    +WV SG    +     E L
Sbjct: 45  WDYGPLGVELKENIKKQWWRNMVTSRDDVVGLDSSVILPRQVWVASGHVSVFNDPLVECL 104

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSR 153
               R+ +  +     E+                         K +  E R    ++++ 
Sbjct: 105 NCHKRHRQDHLQEAYAEKRAAKGETVEPDDVPMSEIVCPDCGTKGQWTEPRDFNMMLKTY 164

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG- 204
              ++           +       F + +    +         G            I   
Sbjct: 165 LGPIESEDGLHYLRPETAQGIFVNFKNVMTTARKKPPFGIGQIGKSFRNEITPGNFIFRT 224

Query: 205 ----DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                +  EF V     ET      D+            +++       E+ +     T 
Sbjct: 225 REFEQMEMEFFVKPGEDETWHQYWIDYRLQWYTDLGIKPENLRLFTHPQEKLSHYSKGTV 284

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYG 318
           D+     F      +     GI     F  GT  K+S      F    G+ +   +    
Sbjct: 285 DIEYRFEFAGSEFGELE---GIANRTDFDLGTHSKHSGESLEYFDQQSGERYIPYVIEPA 341

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFK------ISLINIKA------HDQVCRDACE 366
            G  R + A +  ++  + +   +     +        L  +KA       D+       
Sbjct: 342 AGLTRSLMAFLVDAYTEEEVPKANGGTDTRVVLKLDRRLAPVKAAVLPLSRDEKLSPKAR 401

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++ A L +   +V +DD  + IG ++   D +G P  + V    + D  V ++ R T  +
Sbjct: 402 ELAADLRQFW-NVEFDD-AQGIGKRYRRQDEIGTPFCITVDFDTLEDDSVTVRERDTMAQ 459

Query: 427 EDMSLEEVINYASHRF 442
           E + L EV  Y + R 
Sbjct: 460 ERVPLAEVREYLAARL 475


>gi|289432623|ref|YP_003462496.1| glycyl-tRNA synthetase [Dehalococcoides sp. GT]
 gi|288946343|gb|ADC74040.1| glycyl-tRNA synthetase [Dehalococcoides sp. GT]
          Length = 443

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 65/439 (14%), Positives = 124/439 (28%), Gaps = 44/439 (10%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G I   S    G+   + + PLG +   NV          +R   + +    +    +
Sbjct: 20  RRGFIFPSSEIYGGLNSCWDYGPLGVELKRNVKEAWWRYMVRDRDDVVGLDASIIMHPRV 79

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG    +   M+                E           +S     F         
Sbjct: 80  WEASGHVAGFSDPMVDCKKC-KMRWRPTDLAEPKCPACGGELTESR---QFNLMFKTFMG 135

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
             E             +     +        ++  N           ++G          
Sbjct: 136 PVEEAA--------SIVYLRPETAQGIFVNFENVLNTTRKKLPFGIAQIGKSFRNEITTG 187

Query: 200 GPIGGDLSHEFIV-------LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             I      E +         AD    + +       +     N    + + L +     
Sbjct: 188 NFIFRSREFEQMELEYFVKPGADDACLEEWTQYRLNWYKNLGMN---PENLRLRAHRSDE 244

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A YA               E + ++ R            KYS      F     +    
Sbjct: 245 LAHYAKGCYDVEYNFPMGWSELEGIANRRDFDLTQH---AKYSGKSLEYFDEETKEHFVP 301

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
            +     G  R   A +  ++  +              ++AP+KI+++ +    ++  D 
Sbjct: 302 YVIEPSAGVERSTLAFLIDAYAEEPDKDEIRTVLHLHPALAPYKIAVLPLSKK-EILSDY 360

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             KIYA L K    V +DD  + IG ++   D +G P  V V  + + D  V ++ R + 
Sbjct: 361 ARKIYADLRKCWM-VAYDDS-QSIGRRYRRQDEIGTPYCVTVDFQSLEDGMVTVRDRDSM 418

Query: 425 IREDMSLEEVINYASHRFS 443
            +  + + E+    + + S
Sbjct: 419 AQIRVKVSELSYILAAKLS 437


>gi|203284284|ref|YP_002222024.1| glycyl-tRNA synthetase [Borrelia duttonii Ly]
 gi|201083727|gb|ACH93318.1| glycyl-tRNA synthetase [Borrelia duttonii Ly]
          Length = 445

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 60/442 (13%), Positives = 141/442 (31%), Gaps = 37/442 (8%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G + Q S       G++ + PLG +   N+     +         +       L   +
Sbjct: 16  RRGFVFQSSEVYGGLSGVWDYGPLGVEIKKNIQEEWWKSMV-YFHENVVGLDSAILMRPE 74

Query: 79  LWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFR-SHIKSYRNLPFTFYQ 134
           +W  SG  DS+ +   +     +R     I           I   +  +S+  +  T   
Sbjct: 75  VWKASGHVDSFLELLVDCRNCKNRFRTDFIDLSKGCPNCGSIGTFTTPRSFNLMFKTNIG 134

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
                  E+  R    +     +      D T         ++  ++             
Sbjct: 135 AVEDSSSEIYLRPETAQG--IFVNFRNVLDTTRLKVPFGIAQVGKAFRNEIIAKNFIFRV 192

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
              E   +       F+  +   +   +  +  M+F I +     D++       ++  A
Sbjct: 193 CEFEQMEMQF-----FVHPSQMDDWYCYWREKRMNFFIETLGIKADNLRFQKHNDDEL-A 246

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQ 313
            YA  +            E + +  RG    +        S      +     G  +   
Sbjct: 247 HYAKAAVDIEYNFPFGFQEIEGIHNRGNYDLNQHAKFCGKSK--LFEYHDLITGDKYIPY 304

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDA 364
           +    +G  R V   +  ++  + +              +AP+K++++ +   D    + 
Sbjct: 305 VIETSLGLTRSVLMTLCDAYACEELEGGDKRIVLHLHPKIAPYKVAILPLVKKD-GLPEL 363

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K++ + S     +F+D+    IG ++   D +G P  V +    + +  + ++ R T 
Sbjct: 364 ARKVFMQFSD-DFYMFYDE-NGTIGKRYRRQDEIGTPYCVTIDYDTIENRTITLRDRDTM 421

Query: 425 IREDMSLEEVINYASHRFSNNR 446
            +  +S++++ +Y      N +
Sbjct: 422 TQTRISIDDLYSYVKTGILNYK 443


>gi|226323777|ref|ZP_03799295.1| hypothetical protein COPCOM_01552 [Coprococcus comes ATCC 27758]
 gi|225207961|gb|EEG90315.1| hypothetical protein COPCOM_01552 [Coprococcus comes ATCC 27758]
          Length = 491

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 67/440 (15%), Positives = 141/440 (32%), Gaps = 46/440 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     +      L +   W+ SG    +   ++   
Sbjct: 61  WDYGNLGVELKNNVKRAWWKKFVQENPYNVGVDCAILMNPQTWIASGHLGGFSDPLMDCK 120

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           + +++        E+   +       S   + +     +  + +       +      RE
Sbjct: 121 ECHER-FRADKIIEDYAHEHGIDIPDSIDGWSHEEMEGFVKEHEVPCPTCGKHNFTEIRE 179

Query: 155 FLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP---- 201
           F +       +T +     Y +          F +  R   +     I    +S      
Sbjct: 180 FNLMFKTFQGVTEDAKNVVYLRPETAQGIFVNFKNVQRTSRKKLPFGIGQIGKSFRNEIT 239

Query: 202 ---------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                        +  EF    DT        K F    + S     +++   +   E+ 
Sbjct: 240 PGNFTFRTREFEQMELEFFCKPDTDLEWFAYWKKFCLDWLFSLGLKDEEVRYRDHDKEEL 299

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           +  Y+  +            E   ++ R              S      F     + +  
Sbjct: 300 S-FYSKATTDVEFLFPFGWGELWGIADRTDYDLTQHQ---NVSGQDLTYFDDETNEKYIP 355

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRD 363
            +    +GA RVV A + +++D +          + +   +AP KI ++ +        +
Sbjct: 356 YVIEPSLGADRVVLAFLCAAYDEEELEDGSTRTVMHFHPELAPVKIGVLPLSKK---LNE 412

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+YA LSK   +  +DD G  IG ++   D +G P  V        D  V ++ R T
Sbjct: 413 GAEKVYAMLSKY-YNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRDRDT 470

Query: 424 GIREDMSLEEVINYASHRFS 443
             +E + +E++  Y   +F 
Sbjct: 471 MQQERIKIEDLKAYFEKKFE 490


>gi|203287820|ref|YP_002222835.1| glycyl-tRNA synthetase [Borrelia recurrentis A1]
 gi|201085040|gb|ACH94614.1| glycyl-tRNA synthetase [Borrelia recurrentis A1]
          Length = 445

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 60/442 (13%), Positives = 141/442 (31%), Gaps = 37/442 (8%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G + Q S       G++ + PLG +   N+     +         +       L   +
Sbjct: 16  RRGFVFQSSEVYGGLSGVWDYGPLGVEIKKNIQEEWWKSMV-YFHENVVGLDSAILMRPE 74

Query: 79  LWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFR-SHIKSYRNLPFTFYQ 134
           +W  SG  DS+ +   +     +R     I           I   +  +S+  +  T   
Sbjct: 75  VWKASGHVDSFLELLVDCKNCKNRFRTDFIDLSKGCPNCGSIGTFTTPRSFNLMFKTNIG 134

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
                  E+  R    +     +      D T         ++  ++             
Sbjct: 135 AVEDSSSEIYLRPETAQG--IFVNFRNVLDTTRLKVPFGIAQVGKAFRNEIIAKNFIFRV 192

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
              E   +       F+  +   +   +  +  M+F I +     D++       ++  A
Sbjct: 193 CEFEQMEMQF-----FVHPSQMDDWYCYWREKRMNFFIETLGIKADNLRFQKHNDDEL-A 246

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQ 313
            YA  +            E + +  RG    +        S      +     G  +   
Sbjct: 247 HYAKAAVDIEYNFPFGFQEIEGIHNRGNYDLNQHAKFCGKSK--LFEYHDLITGDKYIPY 304

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDA 364
           +    +G  R V   +  ++  + +              +AP+K++++ +   D    + 
Sbjct: 305 VIETSLGLTRSVLMTLCDAYACEELEGGDKRIVLHLHPKIAPYKVAILPLVKKD-GLPEL 363

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K++ + S     +F+D+    IG ++   D +G P  V +    + +  + ++ R T 
Sbjct: 364 ARKVFMQFSD-DFYMFYDE-NGTIGKRYRRQDEIGTPYCVTIDYDTIENRTITLRDRDTM 421

Query: 425 IREDMSLEEVINYASHRFSNNR 446
            +  +S++++ +Y      N +
Sbjct: 422 TQTRISIDDLYSYVKTGILNYK 443


>gi|225552331|ref|ZP_03773271.1| prolyl-tRNA synthetase [Borrelia sp. SV1]
 gi|225371329|gb|EEH00759.1| prolyl-tRNA synthetase [Borrelia sp. SV1]
          Length = 488

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 133/414 (32%), Gaps = 65/414 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      + +I+ ++   TG      P L     L  E    D +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIQSILDKKFKETGHENAYFPMLIPYSFLEREKDHVDGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   +++                                                    
Sbjct: 93  KDAGGESLAEPLVLRP-------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 109 --------TSETIIWNMYSKWIKSYRDLPLKINQWANVVRWEKRTRPFLRTTEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ ++  +   +  +   I     +  +    +            S+ E   
Sbjct: 159 GHTAHATEEEALEETLLILDV-YKRFIEEYLAIPVFCGKKSEKEKFAGAVSTYSI-EALM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+  DGK  +V   S+G+ + R++ A+I    D K
Sbjct: 217 QDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEK 275

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
           G++ P  +AP +I +I I   +        D  + +   L K    V  D D+    G +
Sbjct: 276 GLVLPPRIAPIEIIVIPIFKKEDEINKKILDYSDCVVDTLKKAEFRVEIDKDIRNSPGFR 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFS 443
           F+ A+  G P+++ VG   V  + V I  R    +    +SL+ +++       
Sbjct: 336 FSSAEFKGIPIRLEVGINDVLLNSVTISRRDKDRKFKYQISLDSLVSKVKVELD 389


>gi|261407942|ref|YP_003244183.1| prolyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261284405|gb|ACX66376.1| prolyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 485

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 57/414 (13%), Positives = 122/414 (29%), Gaps = 69/414 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   + P G +  +++ A +      TG      P                         
Sbjct: 42  GCIVFKPDGYEIWEHIQAELDRRFKATGHRNAYFPLFIPE-------------------- 81

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
                                           F   + +          +    + E L 
Sbjct: 82  -------------------------------SFFQKEKEHVEGFNPELPWVTEAAGEKLE 110

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           +       +     H Y+K   SY  +   +   +  +R E   +    + EF+      
Sbjct: 111 ERLAIRPTSETMFGHMYSKWIQSYRDLPVLINQWANVVRWEKRTLPFLRTSEFLWQ---- 166

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT-----SDVHNEKLFDSLP 272
                      +    +       +      VE + A          S+     +     
Sbjct: 167 -----EGHTAHETEAEARGETMQMLDIYQQFVEDYLAIPVIKGQKTPSEKFAGAVDTFSI 221

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      R ++ G   Y GT +S      +   +    Y    S+G+ + R++ ++I   
Sbjct: 222 EAMMKDGRAVQAGTSHYMGTNFSQAFDIQYLNRENTLEYAHTTSWGV-STRLIGSLIMVH 280

Query: 333 HDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIG 389
            D +G++ P  VAP ++ +I I             ++++  L   G  V  DD    + G
Sbjct: 281 GDDRGLVLPPKVAPTQVIMIPIGPPKTRDAVVGRTDELFRELKSAGIRVRVDDNPDVRPG 340

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +F   ++ G P+++ +G + + +    +  R+TG ++ +    +I        
Sbjct: 341 WKFNEYEMRGVPVRLEIGPRDMENGVCVLVSRITGEKKVVEQANLIQEVQSMLE 394


>gi|227548800|ref|ZP_03978849.1| glycyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079130|gb|EEI17093.1| glycyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 460

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 61/436 (13%), Positives = 126/436 (28%), Gaps = 44/436 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +R   + +    +    +WV SG  + +     E L
Sbjct: 33  WDYGPLGVELKENIKRQWWRHMVQSRRDTVGVDTSIILPRQVWVASGHVEVFTDPLVESL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R     +     E+                             E R   G+M++  
Sbjct: 93  HTHKRYRADHLLEAYEEKHGHPPANGLADINDPETGQPGNWT-----EPRAFSGLMKTFL 147

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------LGLKSIPMRAESGPIGG-- 204
             + D+         +       F + +             +G            I    
Sbjct: 148 GPVDDSEGLHYLRPETAQGIFVNFKNVMTSARMKPPFGIANMGKSFRNEITPGNFIFRTR 207

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V     E       D           D +++       E+ +     T D
Sbjct: 208 EFEQMEMEFFVKPGEDEQWHQYWIDNRLQWYIDLGIDPENLRLYEHPKEKLSHYSKRTVD 267

Query: 262 VHNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           V     F      E + V+ R            + S    + F     +           
Sbjct: 268 VEYAYNFTGSKWGELEGVANRTDYDLKTH---AEASGEDLSFFDQETNERWIPYCIEPAA 324

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++                       +AP K++++ +    ++     E
Sbjct: 325 GLGRAMMAFLIDAYHEDEAPNAKGGVDTRVVLKLDRRLAPIKVAVLPLSKKPELSGP-AE 383

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L +   +V +D  G  IG ++   D +G P  V      + D+ V ++ R T  +
Sbjct: 384 DLAQTLRQHW-NVDYDTSGA-IGRRYRRQDEIGTPFCVTFDFDSLEDNAVTVRERDTMQQ 441

Query: 427 EDMSLEEVINYASHRF 442
           E + ++E+ +Y + + 
Sbjct: 442 ERVKIDELESYLAAQL 457


>gi|218249531|ref|YP_002374888.1| glycyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|226321686|ref|ZP_03797212.1| glycyl-tRNA synthetase [Borrelia burgdorferi Bol26]
 gi|226737060|sp|B7J1U3|SYG_BORBZ RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|218164719|gb|ACK74780.1| glycyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|226232875|gb|EEH31628.1| glycyl-tRNA synthetase [Borrelia burgdorferi Bol26]
          Length = 445

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/443 (13%), Positives = 133/443 (30%), Gaps = 37/443 (8%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G + Q S       G + + PLG +   N+     +         +           +
Sbjct: 13  RKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKKEWWKSMV-YLHENIVGLDSAIFMRPE 71

Query: 79  LWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVM-TDIFRSHIKSYRNLPFTFYQ 134
           +W  SG  D +   M+   D   R     I    +          +  +S+  +  T   
Sbjct: 72  IWRASGHVDGFSDSMVDCKDCKSRFRADFIDLSKNCPNCKVGNNFTSPRSFNLMFKTHIG 131

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +      E+  R    +     +      D +         ++  ++             
Sbjct: 132 VVEDSSSEVYLRPETAQG--IFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
              E   +       F+      E   +  ++ M+F I +     D +        Q  A
Sbjct: 190 CEFEQMEMQF-----FVHPKQIDEWFCYWQQNRMNFFIETLKISPDRLRFKAHDSTQL-A 243

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQ 313
            YA  +     +      E + +  RG             + P    +      + +   
Sbjct: 244 HYAKAAFDIEYEFPFGFQEVEGIHNRGNYDLT--QHAKFSNKPKVFEYHDLLTKEKYVPY 301

Query: 314 MGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +     G  R V   +  ++             +     +AP+KI++  +    +   + 
Sbjct: 302 VIETSAGLTRSVLMTLCDAYSEEELSDGDKRIVLRLHPKLAPYKIAIFPLVKKVE-LTEI 360

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +IY  L      +F+DD G  IG ++   D +G P  V +    + D  V ++ R   
Sbjct: 361 ARRIYMELCD-DFHIFYDDSG-TIGKRYRRQDEIGTPYCVTIDYNTIEDETVTVRERNNM 418

Query: 425 IREDMSLEEVINYASHRFSNNRP 447
            ++ + + ++ +Y      N + 
Sbjct: 419 TQKRIFINDLYSYIKTEILNYKE 441


>gi|255327243|ref|ZP_05368317.1| glycine--tRNA ligase [Rothia mucilaginosa ATCC 25296]
 gi|255295523|gb|EET74866.1| glycine--tRNA ligase [Rothia mucilaginosa ATCC 25296]
          Length = 459

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/455 (13%), Positives = 137/455 (30%), Gaps = 51/455 (11%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNV-----NAIIREEQNRTGAIEMSVPTLQS 76
           R G + Q      G    + + PLG +  +N+        +R   +  G   +    +  
Sbjct: 16  RRGFVFQAGEIYGGSRSAWDYGPLGAELKENIRQQWWQRFVRSRADMVG---LDSSVILP 72

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +W  SG   ++   ++   +           H     +  +                 
Sbjct: 73  RAVWEASGHVATFTDPLV---ECLSCHKRLRQDHLLENFEAKKGRAAEGMEEIACPNCGT 129

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL-------- 188
                E +   G+M++    + +          +       F + +    +         
Sbjct: 130 RGEWTEPQNFSGLMKTYLGPVDNEEGLHFLRPETAQGIFVNFNNVVTASRKRPPFGIGQI 189

Query: 189 GLKSIPMRAESGPIGGDLSHEFI-----VLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           G            I      E +     V  D  +       +           + D++ 
Sbjct: 190 GKSFRNEITPGNFIFRTREFEQMEIEYFVHPDDADKYFNEWVEDCWSWFVDLGINPDNMR 249

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSAT 301
             +   E+     A T DV     F      + +   G+     +  G    +S      
Sbjct: 250 RFDVPKEERAHYSAGTIDVEYRFGFQGSEWGELM---GVANRTDYDLGVHNEHSNAKLEY 306

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFK 348
           F  A G+ +   +     G  R + A +  ++                       +AP K
Sbjct: 307 FDQATGERYVPYVIEPSFGLTRSMMAFLVDAYVEDEAPNTKGGVDKRVVLKLDPRLAPVK 366

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            +++ +    +   +   K+   L  +  +V +D+ G  IG ++   D +G P  + V  
Sbjct: 367 AAVLPLSKKAE-LSEPATKLANELRGLW-NVDYDEAGA-IGRRYRRQDEIGTPFCITVDF 423

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             + D  V I+ R T  +E ++L++V +Y + R +
Sbjct: 424 DTLEDQAVTIRERDTMNQERVALDQVKSYLAARLA 458


>gi|255089463|ref|XP_002506653.1| prolyl-tRNA synthetase [Micromonas sp. RCC299]
 gi|226521926|gb|ACO67911.1| prolyl-tRNA synthetase [Micromonas sp. RCC299]
          Length = 620

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 121/414 (29%), Gaps = 71/414 (17%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +  +  ++G      P L     +  E+   + +  E+  +     K
Sbjct: 176 PYGYAIWEAIQRWMDADFKKSGVQNAYFPQLIPYSFITKEASHVEGFSPELALVTRGGGK 235

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                       RP    + +  F       
Sbjct: 236 ELEEPLVV---------------------------------RPTSETIVNHMFTQWIQSY 262

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            DL P       N              L+ +     +    G+ +    V        + 
Sbjct: 263 RDL-PLLINQWANVHRWEMRTRPFIRTLEFLWQEGHTAHATGEEAEARAVQM------ID 315

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           C   F +            I+   S VE +                    E      + +
Sbjct: 316 CYARFAETVAA-----MPVIVGRKSRVESFAG-----------ADCTYTIEAMMGDGKAL 359

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           + G     G  +S     TF    G+  +V   S+G+ + R++  +I +  D  G+  P 
Sbjct: 360 QAGTSHNLGQNFSKAFDTTFLDEKGETRHVYQSSWGV-STRLIGGIIMTHGDDAGLRLPP 418

Query: 343 SVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDD--MGEQIGSQFAVADL 397
            +AP ++ ++ I           DA   I A L+  G  V  DD       G +FA  ++
Sbjct: 419 ELAPIQVVVVPIAQKNKDKAAVADAANAIAATLTNAGIRVKVDDDDRN-SPGWKFAQWEM 477

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLEE---VINYASHRFSN 444
            G P++V VG K V+     +  R      G   D+S  E   ++        +
Sbjct: 478 KGVPIRVEVGPKDVAKDACVVARRDRPGKEGKEFDVSTVEPTSLVAKIRGTLDD 531


>gi|160878806|ref|YP_001557774.1| glycyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|189082277|sp|A9KJ36|SYG_CLOPH RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|160427472|gb|ABX41035.1| glycyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 462

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/441 (15%), Positives = 138/441 (31%), Gaps = 48/441 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV      +  +     +      L +   WV SG   S+   ++   
Sbjct: 32  WDYGNLGVELKNNVKKAWWTKFIQQNPYNVGVDCAILMNPQTWVASGHLGSFSDPLMDCK 91

Query: 98  DRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           +  ++     +I     E+ +T        S+  +    Y  +         +      R
Sbjct: 92  ECRERFRADKIIEDYATEKNLTLEGSVDAWSHEEMS--AYIEKNNIPCPTCGKHNFTDIR 149

Query: 154 EFLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMR 196
           +F +       +T +     Y                             ++G       
Sbjct: 150 QFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQVGKSFRNEI 209

Query: 197 AESGPIGGDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                       E     F    DT        K F    + +     D++   +   E+
Sbjct: 210 TPGNFTFRTREFEQMELEFFCEPDTDLEWFAYWKQFCIDWLQTLGIKEDEMRVRDHEKEE 269

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
            +  Y+  +            E   ++ R              S    + F    G+ + 
Sbjct: 270 LS-FYSKATSDIEFLFPFGWGELWGIADRTDYDLTQHQ---NVSKEDLSYFDDEKGQRYI 325

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCR 362
             +    +GA RV  A + +++D + I          +  ++AP KI ++ +        
Sbjct: 326 PYVIEPSLGADRVTLAFLCAAYDEEEIAEGDVRTVLHFHPAIAPVKIGVLPLSKK---LS 382

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EKIY  LSK   +  +DD G  IG ++   D +G P  +       +D  V ++ R 
Sbjct: 383 ENAEKIYTDLSKY-YNCEFDDRG-NIGKRYRRQDEIGTPFCITYDFDSETDGAVTVRDRD 440

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +E + +E++  Y   +F 
Sbjct: 441 TMEQERIKIEDLKAYFEKKFE 461


>gi|239637564|ref|ZP_04678536.1| histidyl-tRNA synthetase [Staphylococcus warneri L37603]
 gi|239596782|gb|EEQ79307.1| histidyl-tRNA synthetase [Staphylococcus warneri L37603]
          Length = 420

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/406 (13%), Positives = 114/406 (28%), Gaps = 19/406 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   + +        E+  P  +S +L+        D   KEM    D+ D+++   
Sbjct: 19  WRYIENKLDQLMEIYNYQEIRTPIFESTELFARGVGDSTDVVQKEMYTFKDKGDRSLTLR 78

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +        ++   N P   Y     FR E + +    +  +F ++        
Sbjct: 79  PEGTAGVVRSYIEHKMQGNPNQPVKLYYNSPMFRYERKQKGRYRQFNQFGVEA--IGSEN 136

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P         +   Y     +     I    +S        +E +V         FC   
Sbjct: 137 PSIDAEVLAMVMHIYQSFGLKHLKLVINSIGDSDS--RKEYNEALVKHFEPVIDDFCQDC 194

Query: 227 FMDFPIPSENTDFDDIISLNSIV-----------EQWTAPYAATSDVHNEKLFDSLPENK 275
                          +      V           E   A Y       ++     + +  
Sbjct: 195 QSRLHTNPMRILDCKVDRDKEAVKNAPRITDFLNEDSKAYYEQVKKHLDDLEIPYVEDPN 254

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            V          F           A T     G+ + +     G     +  A+      
Sbjct: 255 LVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSQTGIGFALSIERLL 314

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                    +       + I    +       K+   L K G     D +  +I  Q   
Sbjct: 315 LALEEEGIELDIKNDFDLFIVTMGEQADRYAVKLLNELRKNGVKADKDYLNRKIKGQMKQ 374

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           AD L     +++G + + +++++IK+  TG  E + L+++++Y   
Sbjct: 375 ADRLNANYTIVIGDQELENNQIDIKNMETGESESIQLDQIVDYFHK 420


>gi|229817347|ref|ZP_04447629.1| hypothetical protein BIFANG_02609 [Bifidobacterium angulatum DSM
           20098]
 gi|229785136|gb|EEP21250.1| hypothetical protein BIFANG_02609 [Bifidobacterium angulatum DSM
           20098]
          Length = 491

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/440 (15%), Positives = 133/440 (30%), Gaps = 42/440 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +    +WV SG    +     E L
Sbjct: 33  WDYGPLGVALKDNIKREWWRSMVVTRGDVVGVDTSIILPTPVWVASGHVAVFNDPLVECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R     +     E+    +  + +                   E R    ++R+  
Sbjct: 93  NCHKRQRSDKLEESYAEKHGDKLPENGMADIACPDCGTRGKWT----EPRDFNMMLRTHL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------LGLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +    +        +G            I    
Sbjct: 149 GPVEDENSLHYLRPETAQGIFVDFKNVMTSSRKKPPFGIANMGKSFRNEITPGNFIFRTR 208

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V     E       D             +++       E+       T D
Sbjct: 209 EFEQMEMEFFVKPGEDEAWHQYWIDARTQWYLDLGVKPENLRHYEHPKEKLAHYSKRTVD 268

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  +  F      +     G+     F      K+S    + F  A G+ +   +     
Sbjct: 269 IEYKFGFQGSDWGELE---GVANRTDFDLSAHAKHSGEDLSYFNQATGEKYVPYVIEPAA 325

Query: 320 GAMRVVAAVIESSHDGKGI-------------IWPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R +   +  ++D                      +AP K +++ +     +     +
Sbjct: 326 GLTRSLMCFLVDAYDVDEAPNTKGGVDKRTVLHLDPRLAPVKAAVLPLSKKPDLQN-VAQ 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+ A L +    + +D+ G  IG ++   D +G PL V V    + D  V I+ R T  +
Sbjct: 385 KLAADLRQHEWMIDYDEAGA-IGRRYRREDEIGTPLCVTVDFDTLDDQAVTIRERDTMQQ 443

Query: 427 EDMSLEEVINYASHRFSNNR 446
           E +SL++V +Y + R    R
Sbjct: 444 ERVSLDKVADYVAERIGEKR 463


>gi|291546836|emb|CBL19944.1| glycyl-tRNA synthetase, dimeric type [Ruminococcus sp. SR1/5]
          Length = 464

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/443 (14%), Positives = 139/443 (31%), Gaps = 52/443 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   W+ SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKRAWWQKFI----QESPYNVGVDCAILMNPQTWIASGHLGGFSDPL 87

Query: 94  LRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           +   + +++     +I     E  +         S   +     + ++        +   
Sbjct: 88  MDCKECHERFRADKLIEDFCAEHDIAIEGSVDAWSQEKMMDFIKEHEVGCP--SCGKHNF 145

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESG 200
              R+F +       +T +     Y +          F +  R   +     I    +S 
Sbjct: 146 TDIRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSF 205

Query: 201 P-------------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
                             +  EF    DT        K F    + +     D++   + 
Sbjct: 206 RNEITPGNFTFRTREFEQMELEFFCEPDTDLEWFAYWKKFCLDWLSALGLKDDEVRYRDH 265

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             E+ +  Y+  +            E   ++ R              S      F     
Sbjct: 266 DKEELS-FYSKATTDVEFLFPFGWGELWGIADRTDYDLTQHQ---NVSGQDLTYFDDEKK 321

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH--------DQ 359
           + +   +    +GA R+V A + S++D + +    +     +    + A          +
Sbjct: 322 QKYIPYVIEPSLGADRMVLAFLCSAYDEEVLDAEKNDVRTVLHFHPVLAPVKIGVLPLSK 381

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  EKIY +LSK   +  +DD G  IG ++   D +G P  +    +  +D  V ++
Sbjct: 382 KLNEGAEKIYQQLSKK-YNCEYDDRG-NIGKRYRRQDEIGTPFCITYDFESENDGAVTVR 439

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            R T  +  + ++E+  Y + +F
Sbjct: 440 DRDTMEQVRVKIDELDAYFADKF 462


>gi|308160413|gb|EFO62904.1| Prolyl-tRNA synthetase [Giardia lamblia P15]
          Length = 542

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 141/443 (31%), Gaps = 91/443 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRL 96
           G   + P G    + +  +  EE  + G  +   PT+       + G     +  E   +
Sbjct: 70  GCVVFRPYGFFMENAIMKLCEEEYAKIGISQALFPTVIPESFLKKEGDHIKGFEAECFWV 129

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                   ++ +   PT E  +  +F   ++SY++LP   +Q    FR E +    ++R 
Sbjct: 130 EKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRV 189

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           RE                                               I  + +H    
Sbjct: 190 RE-----------------------------------------------IHWNEAHCCHA 202

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+   +Q+      +D     E       +      +   A Y+  SDV          
Sbjct: 203 TAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDKFAGADYSEVSDV-----VMPCG 257

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  R ++   I   G ++S      +     ++ +  +   GI + RV+A  +   
Sbjct: 258 -------RVLQTAGIHNLGQRFSSTFDILYANRANENVHPYLTCAGI-STRVLACALSIH 309

Query: 333 HDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKV-GCDVFWDDM 384
            D  G++ P  +AP  + +I I          D+   +   +I   L    G  V  DD 
Sbjct: 310 GDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDRQVLEKVNEIADTLKSKLGLRVSVDDD 369

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI--REDMSLEEVI------ 435
               +G +    +L G PL++ +G + +++++  +  R  G   +  + + EVI      
Sbjct: 370 FSRSMGDKLYYYELKGVPLRIEIGQRDLTNNQCIVVPRDVGKDQKRVIPITEVIKVSSHT 429

Query: 436 ---------NYASHRFSNNRPVL 449
                    N         +  L
Sbjct: 430 TENHELVVENVIKDELDAYKARL 452


>gi|254167083|ref|ZP_04873936.1| threonyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623939|gb|EDY36501.1| threonyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 612

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/437 (15%), Positives = 144/437 (32%), Gaps = 54/437 (12%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYS----WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           EI  H  ++R+  +  +  G  S    + P G+     +   +  +    GA+++  P +
Sbjct: 192 EIPPHVKLMRSLELADYEPGSDSGNMRYYPKGKLIKALIEDYVENKVIDYGAMQVETPIM 251

Query: 75  QSA---DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
                  L     R+ +    +L   D+                 +      SYRNLP  
Sbjct: 252 YDFNHPSLKSYLNRFPARQYIVLSGKDK----YFLRFAACFGQFLMMHDATISYRNLPLR 307

Query: 132 FYQIQLKF--RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            Y++      R++     G+ R R F M D ++       +   + + +   +++    G
Sbjct: 308 LYEMAKYAFRREQKGELSGLRRLRAFTMPDMHTLAADMPQAMEEFKRQYEMAIKVLKDFG 367

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L                        + G+ +V   +   DF   +++   + +  +N  V
Sbjct: 368 L------------------------ELGDYEVAI-RFTRDFYEENKDFIRELVKLVNRPV 402

Query: 250 --EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             + W   +            DSL +   +S   I+V        + +     T+   +G
Sbjct: 403 LIQMWDERFFYFVLKFEFNFVDSLNKAAALSTVQIDV--------ENAERYGITYYDENG 454

Query: 308 KDHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN--IKAHDQVCRD 363
            + Y  +          R++ A++E +           +  +        I   D     
Sbjct: 455 NEKYPYILHCSPSGAVERILYAMLEKADMDAKKGKKPKLPVWLSPTQVRIIPVKDDFIGC 514

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           + +++       G  V  DD    +  +   A+    P  V++G K      + ++ R  
Sbjct: 515 SIQEM-DYFRSEGFRVDIDDRDLSVSRKIRDAEKEWIPYIVVIGEKEKEKDILTVRIRGG 573

Query: 424 GIREDMSLEEVINYASH 440
           G++E M  EE++     
Sbjct: 574 GVKE-MKREELLALLKK 589


>gi|220906685|ref|YP_002481996.1| histidyl-tRNA synthetase [Cyanothece sp. PCC 7425]
 gi|254782326|sp|B8HMM0|SYH_CYAP4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|219863296|gb|ACL43635.1| histidyl-tRNA synthetase [Cyanothece sp. PCC 7425]
          Length = 429

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/428 (15%), Positives = 125/428 (29%), Gaps = 24/428 (5%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q S+G    LP        V A+ R+   R    E+  P  +   L+        D  GK
Sbjct: 5   QASRGTRDILPEEIVYWQRVEAMARQILQRAAYQEIRTPMFEQTALFERGIGEATDIVGK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    DR ++++   P     +      H    +      +     FR E        R
Sbjct: 65  EMYTFLDRGERSLTLRPEGTAGVVRALIEHKLFAQGGVQRLWYTGPMFRYERPQAG---R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            R+F              +             +  +L L    +   S     D      
Sbjct: 122 QRQFHQLGVEVLGSADPRADAEV---IAIATDLLQQLRLTDWTLMLNSVGNQEDRQRYRQ 178

Query: 212 VLADT-----GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            L D       E      +     P+   ++       +     Q       TS  H ++
Sbjct: 179 ALVDYLTPYQAELDPDSQERLHRNPLRILDSKDQRTQEICQQAPQILNYLGETSRQHFDR 238

Query: 267 LFDSLP------ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +  SL       E      RG++      F  + +   +       G+   +     G  
Sbjct: 239 VQQSLTDLGIPYELNHRLVRGLDYYTHTAFEFQTTELGAQATVCGGGRYDRLVTELGGPD 298

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                            ++   +++        + A  +V       +  +L   G  V 
Sbjct: 299 TP--AVGWAIGLERLILLLQHQNISYEAKPDFYLVAKGEVAEPQALILAQKLRHHGFVVE 356

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY--- 437
            D  G   G Q   AD  G PL +I+G        V++K   +G +E +S  ++++    
Sbjct: 357 LDLSGSAFGKQLKRADRSGAPLCLILGDAEAEAQTVQLKWLASGEQEVLSQTDLLDRSNL 416

Query: 438 ASHRFSNN 445
              + +++
Sbjct: 417 LRQKIADS 424


>gi|326926536|ref|XP_003209455.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like,
           partial [Meleagris gallopavo]
          Length = 635

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 68/188 (36%), Gaps = 4/188 (2%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H  S G   +LP G    + +   IREE ++    E+ 
Sbjct: 295 EEARNRDHRKIGKEQELF--FFHDLSPGSCFFLPRGAFLYNTLTDFIREEYHKRNFTEVV 352

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + ++ LW  SG +  Y + M    D   +     P +      +F    +S+R +P 
Sbjct: 353 SPNIFNSKLWETSGHWQHYSENMFSF-DIEKETFALKPMNCPGHCLMFAHRPRSWREMPL 411

Query: 131 TFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                 +  R+EL     G+ R R F   DA+ F    +      +      L  +H+  
Sbjct: 412 RLADFGVLHRNELSGTLSGLTRVRRFQQDDAHIFCTIEQXXXXXIDIKIKDALGRYHQCA 471

Query: 190 LKSIPMRA 197
              +  + 
Sbjct: 472 TIQLDFQL 479



 Score = 89.8 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/368 (11%), Positives = 107/368 (29%), Gaps = 34/368 (9%)

Query: 86  YDSYGKEMLRLADRN---DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           ++ + +E      R    ++ + +                  Y  L     +   K    
Sbjct: 290 WEKFQEEARNRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFLYNTLTDFIREEYHKRNFT 349

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                 +  S+       +    +         K   +         +            
Sbjct: 350 EVVSPNIFNSK-LWETSGHWQHYSENMFSFDIEKETFALKP------MNCPGHCLMFAHR 402

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                   + LAD G          +           DD   +   +EQ           
Sbjct: 403 PRSWREMPLRLADFGVLHRNELSGTLSGLTRVRRFQQDD-AHIFCTIEQ------XXXXX 455

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD--HYVQMGSYGIG 320
            + K+ D+L    + +   ++    F    ++    + T+ G DG D    V +    +G
Sbjct: 456 IDIKIKDALGRYHQCATIQLD----FQLPIRF----NLTYVGKDGDDKKRPVIIHRAVLG 507

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           ++  + A++    +  G  WP  ++P ++ ++ +    +      +++     + G    
Sbjct: 508 SVERMIAILA---ENYGGKWPFWLSPRQVMVVPVGPTSEG---YAQQVCTEFFEAGFMTD 561

Query: 381 WD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            D D    +  +   A L  +   ++VG K  ++  V ++ R   +  ++ +   I    
Sbjct: 562 VDLDQSCTLNKKIRNAQLAQYNFILVVGEKEKANHAVNVRTRDNKVHGEILVSSAIEKLK 621

Query: 440 HRFSNNRP 447
              S   P
Sbjct: 622 KFKSLRLP 629


>gi|229032054|ref|ZP_04188036.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH1271]
 gi|228729246|gb|EEL80241.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH1271]
          Length = 476

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ +K+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|262203036|ref|YP_003274244.1| glycyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
 gi|262086383|gb|ACY22351.1| glycyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
          Length = 463

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/435 (13%), Positives = 136/435 (31%), Gaps = 42/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           + + PLG +  DN+          +R   + +    +    +W  SG  + +   ++   
Sbjct: 36  WDYGPLGVELKDNIKRQWWRTMVTSRDDVVGLDSSVILPRQVWQASGHVEVFTDPLVESL 95

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  +A      +E        + +    +              E +   G+M++   
Sbjct: 96  YTHKRYRADHLIENYEIKHGHPPANGLADINDPETGQPGKWT----EPKAFSGLMKTFLG 151

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESGP 201
            + D          +       F + +                  R  +        +  
Sbjct: 152 PVDDEEGLHYLRPETAQGIFINFKNVMTTARKKPPFGIAQIGKSFRNEITPGNFIFRTRE 211

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                   F+   +  +   +      D+ +     D +++       ++ +     T D
Sbjct: 212 FEQMEMEFFVKPGEDEQWHQYWIDHRFDWYVQ-LGIDPENLRLFEHPKDKLSHYSKRTVD 270

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGI 319
           V  +  F   P  +     G+     F   T  K+S    + F  A G+ +   +     
Sbjct: 271 VEYKFGFAGNPWGELE---GVANRTDFDLSTHAKHSGEDLSFFDQASGERYTPFVIEPAA 327

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFK------ISLINIK------AHDQVCRDACEK 367
           G  R + A +  ++  + +         +        L  IK      + ++        
Sbjct: 328 GLTRSLMAFLCDAYTEEEVPNAKGGTDTRTVLKLDRRLAPIKVAVLPLSRNEKLSPKARD 387

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A L +   +V +DD  + IG ++   D +G P  V V    + D  V I+ R T  +E
Sbjct: 388 LAAELRQHW-NVEFDD-AQGIGKRYRRQDEIGTPFCVTVDFDTLDDQAVTIRERDTMSQE 445

Query: 428 DMSLEEVINYASHRF 442
            ++L++V  Y + + 
Sbjct: 446 RVALDKVAEYLAGKL 460


>gi|152976821|ref|YP_001376338.1| histidyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189082285|sp|A7GT85|SYH_BACCN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|152025573|gb|ABS23343.1| histidyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 423

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 123/415 (29%), Gaps = 20/415 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 13  LPGSVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYTFQDRG 72

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           D+++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 73  DRSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF---IVLAD 215
                   P             Y  +  +     +    +  P       E         
Sbjct: 130 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGD--PASRQAHREALIAHFKPR 187

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL---- 271
            GE    C       P+   +   D    L +     T      S  + EK+ + L    
Sbjct: 188 IGEFCSDCQSRLEKNPLRILDCKRDRDHELMNTAPSITDYLNEESTAYYEKVQELLTMMG 247

Query: 272 ----PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                +   V         +F   ++     + T     G+ + +     G     +  A
Sbjct: 248 VPFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFA 307

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +               +         + A     +D   K+   L K G  V  D +  +
Sbjct: 308 MSIERLIMALKAENIELPIENTIDCYVVALGDKAKDHAAKVAFDLRKSGLSVEKDYLNRK 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 368 MKAQFKSADRLNAKYVAVLGEDELDKGVINLKDMATGEQEEVALDVFASYIAEKL 422


>gi|47566592|ref|ZP_00237414.1| histidyl-tRNA synthetase [Bacillus cereus G9241]
 gi|47556622|gb|EAL14954.1| histidyl-tRNA synthetase [Bacillus cereus G9241]
          Length = 423

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 13  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 72

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 73  ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 130 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 188

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ +K+ + L     
Sbjct: 189 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDV 248

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 249 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 308

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 309 SIERLIMALKAENIELPIEHSMDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 369 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 422


>gi|228987655|ref|ZP_04147769.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772115|gb|EEM20567.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 476

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQSHRDALIA-HFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ +K+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|25028734|ref|NP_738788.1| glycyl-tRNA synthetase [Corynebacterium efficiens YS-314]
 gi|23494020|dbj|BAC18988.1| putative glycyl-tRNA synthetase [Corynebacterium efficiens YS-314]
          Length = 473

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/436 (13%), Positives = 133/436 (30%), Gaps = 44/436 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           + + PLG +  +N+          +R   + +    +    +WV SG  + +   ++   
Sbjct: 46  WDYGPLGVELKENIKRQWWRTMVTSRPDVVGVDTSVILPRQVWVTSGHVEVFTDPLVESL 105

Query: 97  -ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  +A      +EE       + +    +              E +   G++++   
Sbjct: 106 HTHKRYRADHLLEAYEEKHGHPPANGLADINDPETGQPGKWT----EPKAFSGLLKTFLG 161

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESGP 201
            + D          +       F + +                  R  +        +  
Sbjct: 162 PVDDEEGLHYLRPETAQGIFVNFKNVMNSSRMKPPFGIANIGKSFRNEITPGNFIFRTRE 221

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                   F+   +  E           + I     + D++       E+ +     T D
Sbjct: 222 FEQMEMEFFVKPGEDEEWHQHWIDARHQWYI-DLGVNPDNLRLYEHPQEKLSHYSKRTVD 280

Query: 262 VHNEKLF--DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     F      E + ++ R      +   G   S    + F    G+     +     
Sbjct: 281 IEYAFNFANSKWGELEGIANRTDYDLRVHSEG---SGEDLSYFDQETGERWIPYVIEPAA 337

Query: 320 GAMRVVAAVIESSHDGKGIIWPD-------------SVAPFKISLINIKAHDQVCRDACE 366
           G  R +   +  ++                       +AP K++++ +    ++     E
Sbjct: 338 GLGRAMMVFLMDAYHEDEAPNSKGGVDKRVVLKLDRRLAPVKVAVLPLSKKPELSGP-AE 396

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+ A L +   +V +D  G  IG ++   D +G P  V V    + D+ V ++ R T  +
Sbjct: 397 KLAAELRQFW-NVEYDTSGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAVTVRERDTMEQ 454

Query: 427 EDMSLEEVINYASHRF 442
             + L+E+  Y + + 
Sbjct: 455 IRVPLDELQGYLAQQL 470


>gi|238060528|ref|ZP_04605237.1| glycyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
 gi|237882339|gb|EEP71167.1| glycyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
          Length = 459

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/435 (15%), Positives = 132/435 (30%), Gaps = 43/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV           R   + +    + +  +W  SG    +   +    
Sbjct: 33  WDYGPLGVELKENVRRQWWRTMVQQRDDVVGLDSAVILARKVWEASGHIAEFVDPL---T 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +       +   H E   +       +                 E +   G+M++    +
Sbjct: 90  ECQSCHKRFRADHLEEAYEAKHGKPLTSLTELNCPNCGNKGTFTEPKMFNGLMKTYLGPV 149

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD------------ 205
           +              +   +FV+Y  +      K     A++G    +            
Sbjct: 150 ESDEGLH---YLRPETAQGIFVNYKNVETVARKKPPFGIAQTGKSFRNEITPGNFIFRTR 206

Query: 206 ----LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   + E                      ++       E+ +     T D
Sbjct: 207 EFEQMEMEFFVEPGSDEQWHEYWLSERWNWYLDLGLSEGNLRFYEHPKEKLSHYSKRTVD 266

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     F     N+     GI     F   T  K+S    + F  A G+     +     
Sbjct: 267 IEYRFQF---GGNEFAELEGIANRTDFDLSTHSKHSGVDLSYFDQAKGERWMPYVIEPAA 323

Query: 320 GAMRVVAAVIESSHDGKGIIWPD------SVAPFKISLINIK------AHDQVCRDACEK 367
           G  R V A +  ++D              +V  F   L  +K      + ++      ++
Sbjct: 324 GLTRAVLAFLLEAYDEDEAPNTKGGVDKRTVMRFDPRLAPVKVAVLPLSRNEALSPKAKQ 383

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A L K    V +DD    IG ++   D +G P  V V    + D  V +++R T  +E
Sbjct: 384 LAADLRKRWV-VEFDDSQA-IGRRYRRQDEIGTPFCVTVDFDTLDDDAVTVRNRDTMAQE 441

Query: 428 DMSLEEVINYASHRF 442
            + L++V  Y   R 
Sbjct: 442 RIGLDQVERYLIERL 456


>gi|73748597|ref|YP_307836.1| glycyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|73660313|emb|CAI82920.1| glycyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
          Length = 433

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/439 (14%), Positives = 124/439 (28%), Gaps = 44/439 (10%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G I   S    G+   + + PLG +   NV          +R   + +    +    +
Sbjct: 10  RRGFIFPSSEIYGGLNSCWDYGPLGVELKRNVKEAWWRYMVRDRDDVVGLDASIIMHPRV 69

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG    +   M+                E           +S     F         
Sbjct: 70  WEASGHVAGFSDPMVDCKKC-KMRWRPTDLAEPKCPACGGELTESR---QFNLMFKTFMG 125

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
             E             +     +        ++  N           ++G          
Sbjct: 126 PVEEAA--------SIVYLRPETAQGIFVNFENVLNTTRKKLPFGIAQIGKSFRNEITTG 177

Query: 200 GPIGGDLSHEFIV-------LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             I      E +         AD    + +       +     N    + + L +     
Sbjct: 178 NFIFRSREFEQMELEYFVKPGADDACLEEWTQYRLNWYKNLGMN---PENLRLRAHRSDE 234

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A YA               E + ++ R            KYS      F     +    
Sbjct: 235 LAHYAKGCYDVEYNFPMGWSELEGIANRRDFDLTQH---AKYSGKSLEYFDEETKEHFVP 291

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
            +     G  R   A +  ++  +              ++AP+KI+++ +    ++  D 
Sbjct: 292 YVIEPSAGVERSTLAFLIDAYAEEPDKDEIRTVLHLHPALAPYKIAVLPLSKK-EILSDY 350

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             KIYA L K    V +DD  + IG ++   D +G P  V V  + + D  V ++ R + 
Sbjct: 351 ARKIYADLRKCWM-VAYDDS-QSIGRRYRRQDEIGTPYCVTVDFQSLEDGMVTVRDRDSM 408

Query: 425 IREDMSLEEVINYASHRFS 443
            +  + + E+    + + S
Sbjct: 409 AQIRVKVSELSYILAAKLS 427


>gi|305680817|ref|ZP_07403624.1| glycine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
 gi|305659022|gb|EFM48522.1| glycine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
          Length = 459

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/436 (14%), Positives = 137/436 (31%), Gaps = 44/436 (10%)

Query: 40  YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           + + PLG +  +N+         Q R   + +    +    +W  SG  +++   ++   
Sbjct: 32  WDYGPLGVELKENIKKQWWRTFVQGRADMVGLDSSIILPRQVWEASGHVETFTDPLVESL 91

Query: 97  -ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  +A      +E+       + +    +              E +   G+M++   
Sbjct: 92  HTHKRYRADHLLEAYEQKHGHPPANGLADVPDPETGQPGAWT----EPQMFSGLMKTFLG 147

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESGP 201
            + +          +       F +                    R  +        +  
Sbjct: 148 PVDNEQGLHYMRPETAQGIFINFKNVQTTARMKPPFGIGQVGKAFRNEITPGNFIFRTRE 207

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                   F+  +D  E          D+ I     + D++   +   E+     A T D
Sbjct: 208 FEQMEIEYFVSPSDAPEKFQEWVDACWDWFI-DLGINPDNMRQFDVPKEERAHYSAGTID 266

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGI 319
                 F      + +   G+     +  G+  KYS    + F    G+ +   +     
Sbjct: 267 FEYRFGFAGSEWGELM---GVANRTDYDLGSHIKYSGEDLSYFDQVTGERYVPYVIEPSF 323

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++                       +AP K++++ +   D       E
Sbjct: 324 GLTRAMMAFLCDAYHEDEAPNAKGGVDKRTVLRLDRRLAPVKVAVLPLSKKD-TLLPTAE 382

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            I A L K+  ++ +D  G  IG ++   D +G P  V V    + D  V ++ R T  +
Sbjct: 383 AIAADLRKLW-NIDYDIAGA-IGRRYRRQDEIGTPFCVTVDFDSLEDRSVTVRERDTMAQ 440

Query: 427 EDMSLEEVINYASHRF 442
           E ++++E+  Y   R 
Sbjct: 441 ERVAIDELPAYLGARL 456


>gi|294501365|ref|YP_003565065.1| histidyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294351302|gb|ADE71631.1| histidyl-tRNA synthetase [Bacillus megaterium QM B1551]
          Length = 422

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/405 (13%), Positives = 121/405 (29%), Gaps = 14/405 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE        E+  P  +  +L++       D   KEM    DR D+++   
Sbjct: 20  WQFVEQRAREICRAFNYQEIRTPMFEHTELFLRGVGETTDIVQKEMYTFKDRGDRSLTLR 79

Query: 108 PTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   F  + +      P   + I   FR E        +  +F ++        
Sbjct: 80  PEGTAAVGRSFVSNKMFGNPTQPTKLFYIGPMFRYERPQAGRFRQFVQFGVEALG--VND 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-TGETQVFCSK 225
           P         +   Y  +  +     +    ++              A   GE    C  
Sbjct: 138 PAIDAEVLALLMSFYQSLGLKKLKLVVNSLGDTESRQAHRQALIDHFAPRIGEFCSDCQS 197

Query: 226 DFMDFPIPSENTDFDD-------IISLNSIVEQWTAPYAATSDVHNEKL-FDSLPENKRV 277
                P+   +   D          S+   +  ++  Y      +   L  D + +   V
Sbjct: 198 RLEKNPLRILDCKKDRDHELMATAPSILDYLNDYSKEYFEKVQQYLTDLDIDYVVDPTLV 257

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                     F   ++     + T     G+ + +     G     +  A+         
Sbjct: 258 RGLDYYNHTAFELMSEAEGFGAITTLCGGGRYNGLIQEIGGPETPGIGFALSIERLLSAL 317

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                 +         +       ++    I   L + G     D   +++ +QF  AD 
Sbjct: 318 EAEGIELPVETGVDCYVVTMGDEAKEKSVSIVNTLRRAGFVADKDYQDKKMKAQFKAADR 377

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +     V++G   ++   V +K+  +G ++++S++++++Y   + 
Sbjct: 378 VQAKFVVVLGDDELAKQVVNVKNMESGEQQEVSIDQLVSYLQQQV 422


>gi|196039347|ref|ZP_03106653.1| histidine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|196029974|gb|EDX68575.1| histidine--tRNA ligase [Bacillus cereus NVH0597-99]
          Length = 476

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 125/414 (30%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ +K+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K+  TG +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLKAKFVAVLGEDELDKGIINLKNMATGEQEEVALDVFASYVAEKL 475


>gi|282889555|ref|ZP_06298097.1| hypothetical protein pah_c001o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500568|gb|EFB42845.1| hypothetical protein pah_c001o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 505

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 132/426 (30%), Gaps = 86/426 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +N+   + ++   TG      P       L  E+   + + KE   +
Sbjct: 37  GCMVIKPWGYGIWENMQKYLDQKIKSTGHENAYFPLFIPLSFLEKEAAHVEGFAKECAVV 96

Query: 97  ADRN--------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
                             ++ +I  PT E ++ + F   ++SYR+LP    Q     R E
Sbjct: 97  THHRLEERNGKLIPTGELEEPLIVRPTSETIIGESFSRWVESYRDLPLLINQWANVVRWE 156

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           +RPR  + R+ EFL ++                                   + A S   
Sbjct: 157 MRPRIFL-RTAEFLWQEG--------------------------------HTVHASSEEA 183

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
             +      V  +  E  +       +              ++  +V+            
Sbjct: 184 FEETLKMLEVYREFVENILAIPVITGEKSPGERFPGAVSTYTIEMMVQD----------- 232

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                            + ++ G   + G  ++   +  F   DG+  Y    S+GI   
Sbjct: 233 ----------------RKALQGGTSHFLGQNFAKASNIRFSNKDGETEYGHTTSWGI-TT 275

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSK----- 374
           R++ A+I +  D  GI  P  +A  ++ ++ I    +         EK+   L       
Sbjct: 276 RLIGALIMTHGDDDGIRLPPKIAHRQVVILPIMPKPEHEAAVLGQAEKVAQELRSSTFNG 335

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT--GIREDMSLE 432
               V  D    + G +       G P+++ +G + V +  V +  R      +  + + 
Sbjct: 336 QPISVHVDKRDLRGGEKNWEWIKKGVPIRIEIGPRDVENQVVTLCRRDQPHKTKITIPVA 395

Query: 433 EVINYA 438
           E+    
Sbjct: 396 ELSQKL 401


>gi|269127431|ref|YP_003300801.1| glycyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
 gi|268312389|gb|ACY98763.1| glycyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
          Length = 462

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/432 (13%), Positives = 134/432 (31%), Gaps = 36/432 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     +    +R   + +    + + ++W  SG   ++   +    
Sbjct: 35  WDYGPLGVELKNNVKRQWWKSMVQSREDVVGLDSCVILAREVWEASGHVQAFVDPLTECT 94

Query: 98  --------DRNDKAMIYGPTHEEVMTD----IFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
                   D  ++A                       K     P  F  +   F   +  
Sbjct: 95  SCHKRFRADHLEEAYQAKHGRPPAGGLADVNCPNCGTKGAFTEPRMFNGLLKTFLGPVED 154

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+   R    +  +   +  + S        +  +    R  +        +      
Sbjct: 155 ASGLAYLRPETAQGIFINFMNVQQSSRRKIPFGIGQIGKSFRNEITPGNFIFRTREFEQM 214

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               F+      E   +     + + +       +++       E+ +     T D+  E
Sbjct: 215 EMEFFVEPGTDEEWHQYWIDQRLQWYV-DLGIRKENLRLYEHPAEKLSHYSKRTVDI--E 271

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             FD +         GI     F   T  K S    + F    G+ +   +     G  R
Sbjct: 272 YRFDFVGAEWGELE-GIANRTDFDLSTHAKASGQDLSYFDQEKGERYIPYVIEPAAGVDR 330

Query: 324 VVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V   +  ++                       +AP K +++ + + +         + A
Sbjct: 331 CVLTFLLDAYAEDEAPNAKGKLEKRTVLRLDPRLAPVKAAVLPL-SRNADLSPKARDLAA 389

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           RL K   +V +DD G  IG ++   D +G P  + V    + D  V ++ R +  +E ++
Sbjct: 390 RLRKHW-NVEFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLEDDAVTVRERDSMKQERIA 447

Query: 431 LEEVINYASHRF 442
           + +V ++ + + 
Sbjct: 448 ISQVESFLAAQL 459


>gi|119953193|ref|YP_945402.1| prolyl-tRNA synthetase [Borrelia turicatae 91E135]
 gi|119861964|gb|AAX17732.1| prolyl-tRNA synthetase [Borrelia turicatae 91E135]
          Length = 501

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/420 (15%), Positives = 127/420 (30%), Gaps = 75/420 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G    + + +I+  +   TG      P L   + L  E      +  E+  +
Sbjct: 46  GCMVIMPYGYAIWEQIKSILDNKFKETGHENAYFPLLIPYEFLEREKEHVKGFSPELAVI 105

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                + +                                                    
Sbjct: 106 TTAGGEELAEPLVLRP-------------------------------------------- 121

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 122 --------TSETIIWNMYSKWIKSYRDLPVKINQWANIVRWEKRTRPFLRTTEFLWQ--- 170

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-----PYAATSDVHNEKLFDSL 271
                       +    +       +      +E + A           +     +    
Sbjct: 171 ------EGHTAHETAGEALEETLFILNLYKRFIEDYLAIPVFCGQKTEREKFAGAVSTYT 224

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E      + ++ G   Y G  ++      F+   G+  YV   S+G+ + R++ A+I  
Sbjct: 225 IEALMQDKKALQAGTSHYLGLNFAKAFDVKFQNKKGEMDYVFATSWGV-STRLIGALIMV 283

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGE 386
             D KG+I P  +AP +I ++ I   D        +    I+  L +    V  D D+  
Sbjct: 284 HSDSKGLILPPKIAPIEIIIVPIFKRDDEVNKKIIEYATTIFNILKEAKFRVELDRDIKN 343

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR--LTGIREDMSLEEVINYASHRFSN 444
             G +FA  +L G P+++ VGS  +    V +  R      +  +S++E+ +   H    
Sbjct: 344 SPGFRFAAVELKGIPIRIEVGSNDILMDCVTVARRDQDKNSKYQVSVKELPSKMRHELET 403


>gi|259507795|ref|ZP_05750695.1| glycine--tRNA ligase [Corynebacterium efficiens YS-314]
 gi|59798591|sp|Q8FNG6|SYG_COREF RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|259164588|gb|EEW49142.1| glycine--tRNA ligase [Corynebacterium efficiens YS-314]
          Length = 461

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/436 (13%), Positives = 133/436 (30%), Gaps = 44/436 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           + + PLG +  +N+          +R   + +    +    +WV SG  + +   ++   
Sbjct: 34  WDYGPLGVELKENIKRQWWRTMVTSRPDVVGVDTSVILPRQVWVTSGHVEVFTDPLVESL 93

Query: 97  -ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  +A      +EE       + +    +              E +   G++++   
Sbjct: 94  HTHKRYRADHLLEAYEEKHGHPPANGLADINDPETGQPGKWT----EPKAFSGLLKTFLG 149

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESGP 201
            + D          +       F + +                  R  +        +  
Sbjct: 150 PVDDEEGLHYLRPETAQGIFVNFKNVMNSSRMKPPFGIANIGKSFRNEITPGNFIFRTRE 209

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                   F+   +  E           + I     + D++       E+ +     T D
Sbjct: 210 FEQMEMEFFVKPGEDEEWHQHWIDARHQWYI-DLGVNPDNLRLYEHPQEKLSHYSKRTVD 268

Query: 262 VHNEKLF--DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     F      E + ++ R      +   G   S    + F    G+     +     
Sbjct: 269 IEYAFNFANSKWGELEGIANRTDYDLRVHSEG---SGEDLSYFDQETGERWIPYVIEPAA 325

Query: 320 GAMRVVAAVIESSHDGKGIIWPD-------------SVAPFKISLINIKAHDQVCRDACE 366
           G  R +   +  ++                       +AP K++++ +    ++     E
Sbjct: 326 GLGRAMMVFLMDAYHEDEAPNSKGGVDKRVVLKLDRRLAPVKVAVLPLSKKPELSGP-AE 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+ A L +   +V +D  G  IG ++   D +G P  V V    + D+ V ++ R T  +
Sbjct: 385 KLAAELRQFW-NVEYDTSGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAVTVRERDTMEQ 442

Query: 427 EDMSLEEVINYASHRF 442
             + L+E+  Y + + 
Sbjct: 443 IRVPLDELQGYLAQQL 458


>gi|294790521|ref|ZP_06755679.1| glycine--tRNA ligase [Scardovia inopinata F0304]
 gi|294458418|gb|EFG26771.1| glycine--tRNA ligase [Scardovia inopinata F0304]
          Length = 494

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/460 (15%), Positives = 142/460 (30%), Gaps = 46/460 (10%)

Query: 24  KLMLRTGMIHQHS---KG---IYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQ 75
           +L  R G +        G    + + PLG    DN+           R   + +    + 
Sbjct: 28  QLAKRRGFVFPAGEIYGGTRSAWDYGPLGVALKDNIKHEWWRSMVTTRGDVVGVDTSVIL 87

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT-DIFRSHIKSYRNLPFTFYQ 134
            + +WV SG    +   ++   + + +        E        +    S    P     
Sbjct: 88  PSQVWVASGHVTVFNDPLVECLNCHKR-FRADHLEEHFEAKHGRKPEGMSDIPCPDCGTV 146

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR------- 187
            +     +      ++R+    ++D  S       +       F   L    +       
Sbjct: 147 GKWTEPRDFNM---MLRTHLGPVEDENSLHYLRPETAQGIFVDFAEVLTTSRQKPPFGIA 203

Query: 188 -LGLKSIPMRAESGPIGG-----DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +G            I        +  EF V     E       D           + D+
Sbjct: 204 NMGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEDWHQYWIDARRQWYVDLGVNPDN 263

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +       E+ +     T D+  +  F      E + ++ R           +++S    
Sbjct: 264 LRLYEHPKEKLSHYSKRTVDIEYKFGFQGSDWGELEGIANRTDYDLSAH---SRHSGKDL 320

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAP 346
           + F  A G+ +   +     G  R + A +  ++D                      +AP
Sbjct: 321 SYFDQASGERYTPYVIEPAAGLTRSLMAFLVDAYDVDEAPNTKGGVDTRTVLRLDPRLAP 380

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            K +++ +    Q+       +   L +   DV +D+ G  IG ++   D +G PL V V
Sbjct: 381 VKAAVLPLSKKPQLQT-IAHNLADELREDDWDVDYDEAGA-IGRRYRRQDEIGTPLCVTV 438

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
               + D  V I+ R T  ++ ++L++V +Y      + R
Sbjct: 439 DFDTLDDQAVTIRERDTMKQDRVALDQVASYVGSFIKDKR 478


>gi|270308100|ref|YP_003330158.1| glycyl-tRNA synthetase [Dehalococcoides sp. VS]
 gi|270153992|gb|ACZ61830.1| glycyl-tRNA synthetase [Dehalococcoides sp. VS]
          Length = 445

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/439 (15%), Positives = 126/439 (28%), Gaps = 44/439 (10%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G I   S    G+   + + PLG +   NV          +R   + +    +    +
Sbjct: 22  RRGFIFPSSEIYGGLNSCWDYGPLGVELKRNVKEAWWRYMVRDRDDVVGLDASIIMHPRV 81

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG    +   M+   +            E           +S     F         
Sbjct: 82  WEASGHVAGFSDPMVDCKNC-KMRWRPTDLAEPKCPACGGELTESR---QFNLMFKTFMG 137

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
             E             +     +        ++  N           ++G          
Sbjct: 138 PVEEAAN--------IVYLRPETAQGIFVNFENVLNTTRKKLPFGIAQIGKSFRNEITTG 189

Query: 200 GPIGGDLSHEFIV-------LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             I      E +         AD    + +       +     N    + + L +     
Sbjct: 190 NFIFRSREFEQMELEYFVKPGADDACLEEWTQYRLNWYKNLGMN---PENLRLRAHRSDE 246

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A YA               E + ++ R           +KYS      F     +    
Sbjct: 247 LAHYAKGCYDVEYNFPMGWSELEGIANRRDFDLTQH---SKYSGKALEYFDEETKEHFVP 303

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
            +     G  R   A +  ++  +              ++AP+KI+++ +    ++  D 
Sbjct: 304 YVIEPSAGVERSTLAFLIDAYSEEPDKDEIRTVLHLHPALAPYKIAVLPLSKK-EILSDY 362

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             KIYA L K    V +DD  + IG ++   D +G P  V V  + + D  V I+ R + 
Sbjct: 363 ARKIYADLRKCWM-VAYDDS-QSIGRRYRRQDEIGTPYCVTVDFQSLEDGMVTIRDRDSM 420

Query: 425 IREDMSLEEVINYASHRFS 443
            +  + + E+    + + S
Sbjct: 421 GQIRVKVSELSYILAAKLS 439


>gi|15594747|ref|NP_212536.1| prolyl-tRNA synthetase [Borrelia burgdorferi B31]
 gi|13633966|sp|O51363|SYP_BORBU RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|2688299|gb|AAC66767.1| prolyl-tRNA synthetase (proS) [Borrelia burgdorferi B31]
          Length = 488

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/414 (16%), Positives = 133/414 (32%), Gaps = 65/414 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      + +I+ ++   TG      P L     L  E    D +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIQSILDKKFKETGHENAYFPMLIPYSFLEREKDHIDGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   +++                                                    
Sbjct: 93  KDAGGESLAEPLVLRP-------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 109 --------TSETIIWNMYSKWIKSYRDLPLKINQWANVVRWEKRTRPFLRTTEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ ++  +   +  +   I     +  +    +            S+ E   
Sbjct: 159 GHTAHATEEEALEETLLILDV-YKRFIEDYLAIPVFCGKKSEKEKFAGAVSTYSI-EALM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+  DGK  +V   S+G+ + R++ A+I    D K
Sbjct: 217 QDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEK 275

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
           G++ P  +AP +I +I I   +        D  + +   L K    V  D D+    G +
Sbjct: 276 GLVLPPRIAPIEIIVIPIFKKEDEINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFR 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFS 443
           F+ A+  G P+++ VG   V  + V I  R    +    +SL+ +I+       
Sbjct: 336 FSSAEFKGIPIRLEVGINDVLLNSVTISRRDKDRKFKYQISLDSLISKVKVELD 389


>gi|223888966|ref|ZP_03623557.1| prolyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|223885782|gb|EEF56881.1| prolyl-tRNA synthetase [Borrelia burgdorferi 64b]
          Length = 488

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 133/414 (32%), Gaps = 65/414 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      + +I+ ++   TG      P L     L  E    D +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIQSILDKKFKETGHENAYFPMLIPYSFLEREKDHIDGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   +++                                                    
Sbjct: 93  KDAGGESLAEPLVLRP-------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 109 --------TSETIIWNMYSKWIKSYRDLPLKINQWANVVRWEKRTRPFLRTTEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ ++  +   +  +   I     +  +    +            S+ E   
Sbjct: 159 GHTAHATEEEALEETLLILDV-YKRFIEDYLAIPVFCGKKSEKEKFAGAVSTYSI-EALM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+  DGK  +V   S+G+ + R++ A+I    D K
Sbjct: 217 QDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEK 275

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
           G++ P  +AP +I +I I   +        D  + +   L K    V  D D+    G +
Sbjct: 276 GLVLPPRIAPIEIIVIPIFKKEDEINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFR 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFS 443
           F+ A+  G P+++ VG   V  + V I  R    +    +SL+ +++       
Sbjct: 336 FSSAEFKGIPIRLEVGINDVLLNSVTISRRDKDRKFKYQISLDSLVSKVKVELD 389


>gi|182420049|ref|ZP_02951283.1| glycyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237669522|ref|ZP_04529502.1| glycine--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376086|gb|EDT73673.1| glycyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237654966|gb|EEP52526.1| glycine--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 463

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/439 (13%), Positives = 141/439 (32%), Gaps = 45/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     +      L + ++WV SG    +   ++   
Sbjct: 34  WDYGPLGVEFKNNVKKAWWKKFVQESPYNVGLDSAILMNPEVWVASGHVGGFSDPLMDCK 93

Query: 98  --------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ--IQLKFRDELRPRF 147
                   D+  +  +     E    D + +                       ++R   
Sbjct: 94  ECKARFRADKIVEDHMTANGAEVASADGWTNEQLKEYIESNNIVCPKCGKMNYTDIRKFN 153

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSI 193
            + ++ + + +DA S       +       F +  R                 R  +   
Sbjct: 154 LMFKTFQGVTEDAKSEMYLRPETAQGIFVNFKAVQRTSRKKVPFGIAQIGKSFRNEITPG 213

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                +          F       E   +      +F +        + + +    E+  
Sbjct: 214 NFTFRTREFEQMELEFFCKPGTDLEWHKYWKDYCWNFLLN--LNVKPENLRMRDHGEEEL 271

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           + Y+  +            E   ++ R     +      ++S    +       + +   
Sbjct: 272 SFYSNATSDIEYLFPFGWGELWGIADRTDYDLNKHQ---EHSGQDLSYLDQTTNEKYIPY 328

Query: 314 MGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDA 364
           +    +GA RV  A +  ++D +          +    ++APFK +++ +        + 
Sbjct: 329 VIEPSLGADRVALAFLIEAYDEEELEGGDSRTVMHLHPALAPFKAAILPLSKK---LSER 385

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++YA LSK   ++ +D+ G  IG ++   D +G P  + +  + + D  V I++R T 
Sbjct: 386 ALEVYADLSKK-FNLDFDETG-SIGKRYRRQDEIGTPYCITIDFETLEDEAVTIRNRDTM 443

Query: 425 IREDMSLEEVINYASHRFS 443
            +E + + E+ +Y      
Sbjct: 444 EQERIKISELESYIQKSLE 462


>gi|216264165|ref|ZP_03436157.1| prolyl-tRNA synthetase [Borrelia burgdorferi 156a]
 gi|215980638|gb|EEC21445.1| prolyl-tRNA synthetase [Borrelia burgdorferi 156a]
          Length = 488

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 133/414 (32%), Gaps = 65/414 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      + +I+ ++   TG      P L     L  E    D +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIQSILDKKFKETGHENAYFPMLIPYSFLEREKDHIDGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   +++                                                    
Sbjct: 93  KDAGGESLAEPLVLRP-------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 109 --------TSETIIWNMYSKWIKSYRDLPLKINQWANVVRWEKRTRPFLRTTEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ ++  +   +  +   I     +  +    +            S+ E   
Sbjct: 159 GHTAHATEEEALEETLLILDV-YKRFIEDYLAIPVFCGKKSEKEKFAGAVSTYSI-EALM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+  DGK  +V   S+G+ + R++ A+I    D K
Sbjct: 217 QDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMRHVFASSWGV-STRLIGALIMGHSDEK 275

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
           G++ P  +AP +I +I I   +        D  + +   L K    V  D D+    G +
Sbjct: 276 GLVLPPRIAPIEIIVIPIFKKEDEINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFR 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFS 443
           F+ A+  G P+++ VG   V  + V I  R    +    +SL+ +++       
Sbjct: 336 FSSAEFKGIPIRLEVGINDVLLNSVTISRRDKDRKFKYQISLDSLVSKVKVELD 389


>gi|229081668|ref|ZP_04214163.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock4-2]
 gi|228701672|gb|EEL54163.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock4-2]
          Length = 462

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 52  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 111

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 112 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 168

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 169 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 227

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S ++ +K+ + L     
Sbjct: 228 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAIYYDKVQELLTMMDV 287

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 288 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 347

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 348 SIERLIMALKAENIELPLEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 407

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 408 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 461


>gi|206969773|ref|ZP_03230727.1| histidyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|206735461|gb|EDZ52629.1| histidyl-tRNA synthetase [Bacillus cereus AH1134]
          Length = 423

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 123/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 13  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 72

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 73  ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 130 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 188

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
            E    C       P+   +   D    L       T      S V+ EK+ + L     
Sbjct: 189 DEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYEKVQELLTMMDV 248

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 249 PFEKDPNLVRGLDYYQHTVFEIMSEADGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 308

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 309 SIERLIMALKAENIELPLEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 369 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 422


>gi|302670581|ref|YP_003830541.1| glycyl-tRNA synthetase GlyS [Butyrivibrio proteoclasticus B316]
 gi|302395054|gb|ADL33959.1| glycyl-tRNA synthetase GlyS [Butyrivibrio proteoclasticus B316]
          Length = 469

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/444 (15%), Positives = 149/444 (33%), Gaps = 50/444 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     +      L +   W+ SG    +   ++   
Sbjct: 35  WDYGNLGVEFKNNVKKAWWQKFVQENPYNVGVDCAILMNPQTWIASGHLGGFSDPLMDCK 94

Query: 98  DRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           + +++     +I     E  +T        S+  +     +  +        +      R
Sbjct: 95  ECHERFRADKIIEDFAAENNITLETSVDGWSHEEMENFIKEHSVPCP--SCGKHNFTGIR 152

Query: 154 EFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP--- 201
           EF +       +T +     Y +          F +  R   +     I    +S     
Sbjct: 153 EFNLMFKTFQGVTEDAKDTVYLRPETAQGIFVNFKNVQRTSRKKVPFGICQIGKSFRNEI 212

Query: 202 ----------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                         +  EF     T        +      + S     +++   +   E+
Sbjct: 213 TPGNFTFRTREFEQMELEFFCKPGTQTEWFEYWRKTCYEWLLSLGIKKENLRLRDHDPEE 272

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
            +     T+D+     F    E   +++R            + S      F     + + 
Sbjct: 273 LSFYSDHTTDIEYAFPFTDWGELWGIASRTDYDLTRHQ---ETSGQPMDYFDDETNEKYI 329

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQ 359
             +    +GA RV  A +  ++D + I             +  ++AP KI ++ +     
Sbjct: 330 PYVVEPSLGADRVTLAFLCEAYDEENIGTEEKPDMRTVLHFHPALAPVKIGILPLSKK-- 387

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  EKIYA+LSK   +  +DD G  IG ++   D +G P  +    +  +D+ V ++
Sbjct: 388 -LNEGAEKIYAKLSKK-YNCEFDDRG-NIGKRYRRQDEIGTPFCITYDFESENDNMVTVR 444

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R +  +E ++++E+  + S +F 
Sbjct: 445 FRDSMEQERIAIDELEAFFSDKFD 468


>gi|221217681|ref|ZP_03589149.1| prolyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|221192358|gb|EEE18577.1| prolyl-tRNA synthetase [Borrelia burgdorferi 72a]
          Length = 488

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 133/414 (32%), Gaps = 65/414 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      + +I+ ++   TG      P L     L  E    D +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIQSILDKKFKETGHENAYFPMLIPYSFLEREKDHIDGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   +++                                                    
Sbjct: 93  KDAGGESLAEPLVLRP-------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 109 --------TSETIIWNMYSKWIKSYRDLPLKINQWANVVRWEKRTRPFLRTTEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ ++  +   +  +   I     +  +    +            S+ E   
Sbjct: 159 GHTAHATEEEALEETLLILDV-YKRFIEDYLAIPVFCGKKSEKEKFAGAVSTYSI-EALM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+  DGK  +V   S+G+ + R++ A+I    D K
Sbjct: 217 QDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEK 275

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
           G++ P  +AP +I +I I   +        D  + +   L K    V  D D+    G +
Sbjct: 276 GLVLPPRIAPIEIIVIPIFKKEDEINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFR 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFS 443
           F+ A+  G P+++ VG   V  + V I  R    +    +SL+ +++       
Sbjct: 336 FSSAEFKGIPIRLEVGINDVLLNSVTISRRDKDRKFKYQISLDSLVSKVKVELD 389


>gi|210617161|ref|ZP_03291428.1| hypothetical protein CLONEX_03650 [Clostridium nexile DSM 1787]
 gi|210149436|gb|EEA80445.1| hypothetical protein CLONEX_03650 [Clostridium nexile DSM 1787]
          Length = 476

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/439 (15%), Positives = 142/439 (32%), Gaps = 44/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++        + +    L +   WV SG    +   ++   
Sbjct: 46  WDYGNLGVELKNNVKRAWWQKFIMENPYNVGVDCAILMNPQTWVASGHLGGFSDPLMDCK 105

Query: 98  DRNDK--AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           +  ++  A     +  E         + S+       +  +         +      R+F
Sbjct: 106 ECKERFRADQLIESFAEENGIELTESVDSWSKEQMEAWITEHNVPCPTCGKHNFTEIRQF 165

Query: 156 LMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP----- 201
            +       +T +     Y +          F +  R   +     I    +S       
Sbjct: 166 NLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITP 225

Query: 202 --------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                       +  EF     T        K F    + S     ++I + +   E+  
Sbjct: 226 GNFTFRTREFEQMELEFFCEPGTDLEWFAYWKQFCLDWLKSLGIKEEEIKARDHSAEEL- 284

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
             Y+  +            E   ++ R            + S      F     + +   
Sbjct: 285 CFYSKATTDVEFLFPFGWGELWGIADRTDYDLTQHQ---EVSKQDMTYFDDEKKEKYIPY 341

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDA 364
           +    +GA R+V A + S++D + +          +  ++AP KI ++ +        + 
Sbjct: 342 VIEPSLGADRMVLAFLCSAYDEEELEGGDVRTVLHFHPALAPIKIGVLPLSKK---LNEG 398

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            EK++A+LSK   +  +DD G  IG ++   D +G P  +    +   D  V ++ R T 
Sbjct: 399 AEKVFAQLSKY-YNCEFDDRG-NIGKRYRRQDEIGTPFCITYDFESEEDGAVTVRDRDTM 456

Query: 425 IREDMSLEEVINYASHRFS 443
            +E + +E++  Y   +F 
Sbjct: 457 EQERVKIEDLKTYFEKKFE 475


>gi|195942244|ref|ZP_03087626.1| prolyl-tRNA synthetase [Borrelia burgdorferi 80a]
          Length = 488

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 133/414 (32%), Gaps = 65/414 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      + +I+ ++   TG      P L     L  E    D +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIQSILDKKFKETGHENAYFPMLIPYSFLEREKDHIDGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   +++                                                    
Sbjct: 93  KDAGGESLAEPLVLRP-------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 109 --------TSETIIWNMYSKWIKSYRDLPLKINQWANVVRWEKRTRPFLRTTEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ ++  +   +  +   I     +  +    +            S+ E   
Sbjct: 159 GHTAHATEEEALEETLLILDV-YKRFIEDYLAIPVFCGKKSEKEKFAGAVSTYSI-EALM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+  DGK  +V   S+G+ + R++ A+I    D K
Sbjct: 217 QDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEK 275

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
           G++ P  +AP +I +I I   +        D  + +   L K    V  D D+    G +
Sbjct: 276 GLVLPPRIAPIEIIVIPIFKKEDEINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFR 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFS 443
           F+ A+  G P+++ VG   V  + V I  R    +    +SL+ +++       
Sbjct: 336 FSSAEFKGIPIRLEVGINDVLLNSVTISRRDKDRKFKYQISLDSLVSKVKVELD 389


>gi|224533003|ref|ZP_03673610.1| proline--tRNA ligase [Borrelia burgdorferi WI91-23]
 gi|225549051|ref|ZP_03770026.1| prolyl-tRNA synthetase [Borrelia burgdorferi 94a]
 gi|225549517|ref|ZP_03770483.1| prolyl-tRNA synthetase [Borrelia burgdorferi 118a]
 gi|224512063|gb|EEF82457.1| proline--tRNA ligase [Borrelia burgdorferi WI91-23]
 gi|225369794|gb|EEG99241.1| prolyl-tRNA synthetase [Borrelia burgdorferi 118a]
 gi|225370277|gb|EEG99715.1| prolyl-tRNA synthetase [Borrelia burgdorferi 94a]
          Length = 488

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 133/414 (32%), Gaps = 65/414 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      + +I+ ++   TG      P L     L  E    D +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIQSILDKKFKETGHENAYFPMLIPYSFLEREKDHIDGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   +++                                                    
Sbjct: 93  KDAGGESLAEPLVLRP-------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 109 --------TSETIIWNMYSKWIKSYRDLPLKINQWANVVRWEKRTRPFLRTTEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ ++  +   +  +   I     +  +    +            S+ E   
Sbjct: 159 GHTAHATEEEALEETLLILDV-YKRFIEDYLAIPVFCGKKSEKEKFAGAVSTYSI-EALM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+  DGK  +V   S+G+ + R++ A+I    D K
Sbjct: 217 QDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEK 275

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
           G++ P  +AP +I +I I   +        D  + +   L K    V  D D+    G +
Sbjct: 276 GLVLPPRIAPIEIIVIPIFKKEDEINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFR 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFS 443
           F+ A+  G P+++ VG   V  + V I  R    +    +SL+ +++       
Sbjct: 336 FSSAEFKGIPIRLEVGINDVLLNSVTISRRDKDRKFKYQISLDSLVSKVKVELD 389


>gi|291457507|ref|ZP_06596897.1| glycine--tRNA ligase [Bifidobacterium breve DSM 20213]
 gi|291381342|gb|EFE88860.1| glycine--tRNA ligase [Bifidobacterium breve DSM 20213]
          Length = 490

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/440 (15%), Positives = 135/440 (30%), Gaps = 42/440 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +   ++WV SG    +     E L
Sbjct: 33  WDYGPLGVALKDNIKREWWRSMVVTRPDVVGVDTSIILPPEVWVASGHVSVFNDPLVECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               RN    +     E+    +  + +K                  E R    ++R+  
Sbjct: 93  NCHKRNRADKLEESYAEKHGDTMPENGMKDIVCPNCGTRGQWT----EPRDFNMMLRTHL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +             +G            I    
Sbjct: 149 GPVEDENSLHYLRPETAQGIFVDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTR 208

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E       D             +++       E+ +     T D
Sbjct: 209 EFEQMEMEFFVEPGTDEEWHQYWIDARTRWYIDLGVKPENLRHYEHPKEKLSHYSKRTVD 268

Query: 262 VHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  +  F      E + ++ R           +K S      F  A G+ +   +     
Sbjct: 269 IEYKFGFQGSDWGELEGIANRTDYDLTAH---SKRSGEDLCYFNQATGEKYIPYVIEPAA 325

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R +   +  ++D                      +AP K +++ +    +  R   +
Sbjct: 326 GLTRSLMCFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPE-LRTVAQ 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L      + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +
Sbjct: 385 NLADDLRFNEWMIDYDESGA-IGRRYRRQDEIGTPLCITVDFDTLEDHAVTIRERDTMAQ 443

Query: 427 EDMSLEEVINYASHRFSNNR 446
           + ++L++V +Y + R    R
Sbjct: 444 DRVALDKVADYVAARIGEKR 463


>gi|295706712|ref|YP_003599787.1| histidyl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294804371|gb|ADF41437.1| histidyl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 422

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/405 (13%), Positives = 120/405 (29%), Gaps = 14/405 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE        E+  P  +  +L++       D   KEM    DR D+++   
Sbjct: 20  WQFVEQRAREICRAFNYQEIRTPMFEHTELFLRGVGETTDIVQKEMYTFKDRGDRSLTLR 79

Query: 108 PTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   F  + +      P   + I   FR E        +  +F ++        
Sbjct: 80  PEGTAAVGRSFVSNKMFGNPTQPTKLFYIGPMFRYERPQAGRFRQFVQFGVEALG--VND 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-TGETQVFCSK 225
           P         +   Y  +  +     +    ++              A   GE    C  
Sbjct: 138 PAIDAEVLALLMSFYQSLGLKKLKLVVNSLGDTESRQAHRQALIDHFAPRIGEFCSDCQS 197

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL--------FDSLPENKRV 277
                P+   +   D    L +            S  + EK+         D + +   V
Sbjct: 198 RLEKNPLRILDCKKDRDHELMATAPSILDYLNDYSREYFEKVQQYLTDLDIDYVVDPTLV 257

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                     F   ++     + T     G+ + +     G     +  A+         
Sbjct: 258 RGLDYYNHTAFELMSEAEGFGAITTLCGGGRYNGLIQEIGGPETPGIGFALSIERLLSAL 317

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                 +         +       ++    I   L + G     D   +++ +QF  AD 
Sbjct: 318 EAEGIELPVETGVDCYVVTMGDEAKEKSVSIVNTLRRAGFVADKDYQDKKMKAQFKAADR 377

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +     V++G   ++   V +K+  +G ++++S++++++Y   + 
Sbjct: 378 VQAKFVVVLGEDELAKQVVNVKNMESGEQQEVSIDQLVSYLQKQV 422


>gi|193214675|ref|YP_001995874.1| glycyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
 gi|193088152|gb|ACF13427.1| glycyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
          Length = 486

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 137/468 (29%), Gaps = 61/468 (13%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G + Q S         + + PLG +   N+         +     +       + +  
Sbjct: 25  RRGFVFQSSEIYGGLASCWDYGPLGVELKRNIKDAWWNAMTKH-YDNIVGLDSAIMMNPR 83

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT------------DIFRSHIKSYR 126
           +W  SG  DS+   M+     + +        E  +              +   + K+  
Sbjct: 84  VWEASGHVDSFNDPMIDDKT-SKRRYRADHLIEGYIASLEKKGKTEEAARVQGEYHKALA 142

Query: 127 NLPFTFYQIQLKFRDELR-PRFGVMRSREFLMKDAYSFDLTPEGSKH------------- 172
             P       L  ++E++ P  G     E    +          +               
Sbjct: 143 TEPLVKSLYDLIIKEEIKAPDSGAFNWTEVRQFNLMFQAPLGAVADEASIVYLRPETAQG 202

Query: 173 -SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--DFMD 229
              N   V            +   +A    I        ++  +  E Q F         
Sbjct: 203 IFVNFQTVREAARMKVPFGIAQIGKAFRNEIVKGNFIFRMIEFEQMEMQYFVKPGTQMEA 262

Query: 230 FPIPSENTDFDDIISLNSIVEQW-------TAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           F    E        SL    E+         A YA  +     +    + E + + +R  
Sbjct: 263 FEEWRERRMSWYTESLGISKEKLHWYKHDQLAHYADAAYDIKFEFPFGIEEIEGIHSRTD 322

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---- 338
                     +YS      F     + +   +     G+ R+  AV+  ++    I    
Sbjct: 323 FDLRRHQ---EYSGKSMEYFDQESKERYLPYVVETSAGSDRLFLAVLSDAYTEDEIDGES 379

Query: 339 ----IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                   ++AP K  L  +    +   +  +K+   L K    V +DD G  IG ++  
Sbjct: 380 RVSLNLHPNLAPIKAGLFPL-MKKEGMPEIAQKLQKELQKQ-FKVQYDDAG-SIGKRYRR 436

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            D +G P    +    + D  V ++ R T  +  ++L++V  + S + 
Sbjct: 437 QDEIGTPYCFTIDHDTLQDGTVTVRDRDTTEQSRIALDQVKAFLSEKL 484


>gi|300780725|ref|ZP_07090579.1| glycine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
 gi|300532432|gb|EFK53493.1| glycine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
          Length = 460

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/436 (13%), Positives = 126/436 (28%), Gaps = 44/436 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+     +    +R   + +    +    +WV SG  + +     E L
Sbjct: 33  WDYGPLGVELKENLKRQWWKTMVQSRADVVGVDTSIILPPQVWVASGHVEVFTDPLVESL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R     +     E+                             E R   G+M++  
Sbjct: 93  HTHKRYRADHLLEAYEEKHGHPPANGLADINDPETGQPGNWT-----EPRAFSGLMKTYL 147

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG-- 204
             + D          +       F + +              G            I    
Sbjct: 148 GPVDDKEGLHYMRPETAQGIFVNFKNVMTSARMKPPFGIANVGKSFRNEITPGNFIFRTR 207

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V     E       D           + +++       E+ +     T D
Sbjct: 208 EFEQMEMEFFVKPGEDEQWHQYWIDARHQWYIDLGINPENLRLYEHPQEKLSHYSKRTVD 267

Query: 262 VHNEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     F      E + V+ R            + S    + F    G+           
Sbjct: 268 LEYAFGFQGSKWGELEGVANRTDYDLKTH---AEASGEDLSFFDQESGERWIPYCIEPAA 324

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++                       ++P K++++ +    ++     E
Sbjct: 325 GLGRAMMAFLIDAYHEDEAPNAKGGVDKRVVLKLDRRLSPIKVAVLPLSKKPELSGP-AE 383

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++ A L +    + +D  G  IG ++   D +G P  V      + D  V ++ R T  +
Sbjct: 384 ELAATLRQHW-SIDYDTSGA-IGRRYRRQDEIGTPFCVTFDFDSLEDKAVTVRERDTMEQ 441

Query: 427 EDMSLEEVINYASHRF 442
           E + L+E+ +Y + R 
Sbjct: 442 ERVPLDELESYLAARL 457


>gi|227546856|ref|ZP_03976905.1| glycine--tRNA ligase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239620833|ref|ZP_04663864.1| glycyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312132438|ref|YP_003999777.1| glyrs [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481588|ref|ZP_07940624.1| glycyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689557|ref|YP_004209291.1| glycyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F]
 gi|322691518|ref|YP_004221088.1| glycyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|227212818|gb|EEI80699.1| glycine--tRNA ligase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239516409|gb|EEQ56276.1| glycyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|311773043|gb|ADQ02531.1| GlyRS [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916948|gb|EFV38334.1| glycyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456374|dbj|BAJ66996.1| glycyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460893|dbj|BAJ71513.1| glycyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F]
          Length = 490

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/440 (15%), Positives = 137/440 (31%), Gaps = 42/440 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +   ++WV SG    +     E L
Sbjct: 33  WDYGPLGVALKDNIKREWWRSMVVTRPDVVGVDTSIILPPEVWVASGHVSVFNDPLVECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               RN    +     E+    +  + +K                  E R    ++R+  
Sbjct: 93  NCHKRNRADKLEESYAEKHGDKMPENGMKDIVCPNCGTRGQWT----EPRDFNMMLRTHL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +             +G            I    
Sbjct: 149 GPVEDENSLHYLRPETAQGIFVDFKNVMTSSRSRPPFGIANMGKSFRNEITPGNFIFRTR 208

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E       D             +++       E+ +     T D
Sbjct: 209 EFEQMEMEFFVTPGTDEEWHQYWIDARTRWYIDLGVKPENLRHYEHPKEKLSHYSKRTVD 268

Query: 262 VHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  +  F      E + ++ R           +K+S    + F  A G+ +   +     
Sbjct: 269 IEYKFGFQGSDWGELEGIANRTDYDLSAH---SKHSGEDLSYFNQATGEKYVPYVIEPAA 325

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R +   +  ++D                      +AP K +++ +    ++     +
Sbjct: 326 GLTRSLMCFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQT-VAQ 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L      + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +
Sbjct: 385 NLADDLRFNEWMIDYDESGA-IGRRYRRQDEIGTPLCITVDFDTLEDHAVTIRERDTMAQ 443

Query: 427 EDMSLEEVINYASHRFSNNR 446
           E ++L++V +Y + R    R
Sbjct: 444 ERVALDKVADYVAARIGEKR 463


>gi|30022479|ref|NP_834110.1| histidyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|218233653|ref|YP_002369213.1| histidyl-tRNA synthetase [Bacillus cereus B4264]
 gi|229048113|ref|ZP_04193684.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH676]
 gi|229111876|ref|ZP_04241422.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock1-15]
 gi|229129684|ref|ZP_04258652.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BDRD-Cer4]
 gi|229146975|ref|ZP_04275337.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST24]
 gi|229152607|ref|ZP_04280796.1| Histidyl-tRNA synthetase 2 [Bacillus cereus m1550]
 gi|296504896|ref|YP_003666596.1| histidyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|39932340|sp|Q817X7|SYH2_BACCR RecName: Full=Histidyl-tRNA synthetase 2; AltName:
           Full=Histidine--tRNA ligase 2; Short=HisRS 2
 gi|29898037|gb|AAP11311.1| Histidyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|218161610|gb|ACK61602.1| histidine--tRNA ligase [Bacillus cereus B4264]
 gi|228630868|gb|EEK87508.1| Histidyl-tRNA synthetase 2 [Bacillus cereus m1550]
 gi|228636472|gb|EEK92940.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST24]
 gi|228653801|gb|EEL09671.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BDRD-Cer4]
 gi|228671632|gb|EEL26930.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock1-15]
 gi|228723216|gb|EEL74590.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH676]
 gi|296325948|gb|ADH08876.1| histidyl-tRNA synthetase [Bacillus thuringiensis BMB171]
          Length = 423

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 13  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 72

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 73  ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 130 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 188

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ +K+ + L     
Sbjct: 189 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDV 248

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 249 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 308

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 309 SIERLIMALKAENIELPLEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 369 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 422


>gi|226320412|ref|ZP_03795979.1| glycyl-tRNA synthetase [Borrelia burgdorferi 29805]
 gi|226234165|gb|EEH32879.1| glycyl-tRNA synthetase [Borrelia burgdorferi 29805]
          Length = 445

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/443 (13%), Positives = 134/443 (30%), Gaps = 37/443 (8%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G + Q S       G + + PLG +   N+     +         +           +
Sbjct: 13  RKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKKEWWKSMV-YLHENIVGLDSAIFMRPE 71

Query: 79  LWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVM-TDIFRSHIKSYRNLPFTFYQ 134
           +W  SG  D +   M+   D   R     I    +          +  +S+  +  T   
Sbjct: 72  IWRASGHVDGFSDSMVDCKDCKSRFRADFIDLSKNCPNCKVGNNFTSPRSFNLMFKTHIG 131

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +      E+  R    +     +      D +         ++  ++             
Sbjct: 132 VVEDSSSEVYLRPETAQG--IFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
              E   +       F+      E   +  ++ M+F I +     + +        Q  A
Sbjct: 190 CEFEQMEMQF-----FVHPKQIDEWFCYWQQNRMNFFIETLKISPNRLRFKAHDSTQL-A 243

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQ 313
            YA  +     +      E + +  RG             + P    +      + +   
Sbjct: 244 HYAKAAFDIEYEFPFGFQEVEGIHNRGNYDLT--QHAKFSNKPKVFEYHDLLTKEKYVPY 301

Query: 314 MGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +     G  R V   +  ++             +     +AP+KI++  +    +   + 
Sbjct: 302 VIETSAGLTRSVLMTLCDAYSEEELSDGDKRIVLRLHPKLAPYKIAIFPLVKKVE-LTEI 360

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +IY  L      +F+DD G  IG ++   D +G P  V +    + D  V I+ R + 
Sbjct: 361 ARRIYMELCD-DFHIFYDDSG-TIGKRYRRQDEIGTPYCVTIDYNTIEDETVTIRERNSM 418

Query: 425 IREDMSLEEVINYASHRFSNNRP 447
            ++ + + ++ +Y      N + 
Sbjct: 419 TQKRIFINDLYSYIKTEILNYKE 441


>gi|228941572|ref|ZP_04104120.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228974501|ref|ZP_04135068.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981095|ref|ZP_04141396.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis Bt407]
 gi|228778636|gb|EEM26902.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis Bt407]
 gi|228785218|gb|EEM33230.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818079|gb|EEM64156.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326942185|gb|AEA18081.1| histidyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 423

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 125/414 (30%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 13  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 72

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 73  ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 130 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 188

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L +     T      S V+ +K+ + L     
Sbjct: 189 GEFCSDCQSRLEKNPLRILDCKKDRNHELMATAPSITEYLNEDSAVYYDKVQELLTMMDV 248

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 249 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 308

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 309 SIERLIMALKAENIELPLEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 369 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 422


>gi|220912137|ref|YP_002487446.1| glycyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
 gi|219859015|gb|ACL39357.1| glycyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
          Length = 461

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/452 (14%), Positives = 137/452 (30%), Gaps = 46/452 (10%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNR--TGAIEMSVPTLQSADL 79
           R G + Q      G    + + PLG +  +N+     +   R     + +    +    +
Sbjct: 16  RRGFVFQAGEIYGGSRSAWDYGPLGAELKENIKRQWWQSMVRGREDVVGLDSSVILPKQV 75

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG  D +   ++     + +        EE   +  +                  + 
Sbjct: 76  WEASGHVDVFSDPLVECLSCHKR-YRADHLEEE--YEEKKGRPAENGLKDIACANCGTRG 132

Query: 140 RD-ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GL 190
              E +   G++++    +            +       F + L    +         G 
Sbjct: 133 EWTEPQEFSGLLKTYLGPVASEEGLHYLRPETAQGIFVNFNNVLTTSRKKPPFGIGQIGK 192

Query: 191 KSIPMRAESGPIGG-----DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                      I        +  EF V   T E                     +++   
Sbjct: 193 SFRNEITPGNFIFRTREFEQMEMEFFVEPGTDEEWHQYWMKERMAWYTGLGIREENLRFF 252

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFK 303
              +E+ +     T+D+     F      +     G+     F   T  K S    + F 
Sbjct: 253 EHPLEKLSHYSKGTTDIEYRFGFQGSEWGELE---GVANRTDFDLSTHAKASGTDLSYFN 309

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKIS 350
            A  + +   +     G  R   A +  ++                       +AP K +
Sbjct: 310 QATNERYTPYVIEPAAGLTRSFMAFLIDAYTEDEAPNAKGGVDVRTVLKLDPRLAPVKAA 369

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ + + ++      + + A+L K   ++ +DD G  IG ++   D +G P  + V    
Sbjct: 370 VLPL-SRNEALSPKAKDLGAQLRKNW-NIDFDDAGA-IGRRYRRQDEIGTPFCITVDFDT 426

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + D  V I+ R T  +E +SL++V  Y + R 
Sbjct: 427 LEDQAVTIRERDTMSQERVSLDKVEGYLASRL 458


>gi|163816527|ref|ZP_02207891.1| hypothetical protein COPEUT_02717 [Coprococcus eutactus ATCC 27759]
 gi|158448227|gb|EDP25222.1| hypothetical protein COPEUT_02717 [Coprococcus eutactus ATCC 27759]
          Length = 471

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/444 (15%), Positives = 140/444 (31%), Gaps = 51/444 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     +      L +   WV SG    +   ++   
Sbjct: 38  WDYGNLGVELKNNVKRAWWKKFIQENPYNVGVDCAILMNPQTWVASGHLGGFADPLMDCK 97

Query: 98  DRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           + +++     +I     E  +         S   +     +  +        +      R
Sbjct: 98  ECHERFRADKLIEDFMAENGVVPEGAVDGWSNEQMEEYVEKNNICCP--TCGKHNFTGIR 155

Query: 154 EFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP--- 201
           +F +       +T +     Y +          F +  R   +     I    +S     
Sbjct: 156 QFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEI 215

Query: 202 ----------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                         +  EF     T        + F    +       D++ + +   E+
Sbjct: 216 TPGNFTFRTREFEQMELEFFCKPGTDMEWFEYWRSFCINWLKDLGIKDDEMRARDHSHEE 275

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
               Y+  +            E   ++ R           +  S+     F     + + 
Sbjct: 276 L-CFYSKGTTDIEYLFPFGWGELWGIADRTDYDLTQHQNTSGESMEY---FDDETKEKYI 331

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQ 359
             +    +GA RV  A + +++D + I             +   +AP KI ++ +     
Sbjct: 332 PYVIEPSLGADRVTLAFLCAAYDEENIGTEEKPDIRTVLHFHPQLAPVKIGVLPLSKK-- 389

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  EKIYA LSK   +  +DD G  IG ++   D +G P  V      V D  V ++
Sbjct: 390 -LNEGAEKIYAELSKY-YNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFDSVEDGAVTVR 446

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R T  +E + +E++  Y   +F 
Sbjct: 447 DRDTMEQERVKIEDLKAYFEKKFE 470


>gi|283796156|ref|ZP_06345309.1| glycine--tRNA ligase [Clostridium sp. M62/1]
 gi|291076375|gb|EFE13739.1| glycine--tRNA ligase [Clostridium sp. M62/1]
 gi|295092207|emb|CBK78314.1| glycyl-tRNA synthetase, dimeric type [Clostridium cf.
           saccharolyticum K10]
 gi|295115529|emb|CBL36376.1| glycyl-tRNA synthetase, dimeric type [butyrate-producing bacterium
           SM4/1]
          Length = 462

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/442 (14%), Positives = 130/442 (29%), Gaps = 50/442 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L ++  WV SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKKAWWQKF----VQESPYNVGVDCAILMNSQTWVASGHLGGFSDPL 87

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSH--IKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +      ++        + +  +       +  +       Y            +     
Sbjct: 88  MDCKSCKERFRADKLIEDYMAANNIEMEGSVDGWSQEEMKQYIDDHNICCPSCGKHDFTD 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIP 194
            R+F +       +T +     Y                             ++G     
Sbjct: 148 IRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRN 207

Query: 195 MRAESGPIGGDLSHEFIVLADTGET--QVFCSKDFMDFPIPSENT--DFDDIISLNSIVE 250
                         E + L    E    +     + +F I    T    DD +       
Sbjct: 208 EITPGNFTFRTREFEQMELEFFCEPGTDLEWFAYWKEFCINWLKTLGIKDDEMRARDHSP 267

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           +    Y+  +            E   ++ R              S      F     + +
Sbjct: 268 EELCFYSKATTDLEFLFPFGWGELWGIADRTDYDLTQHQ---NTSGQDMTYFDDEKKEKY 324

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVC 361
              +    +GA RV  A + S++D + I          +  ++AP KI ++ +       
Sbjct: 325 IPYVIEPSLGADRVTLAFLCSAYDEEEIGEGDVRTVLHFHPAIAPVKIGVLPLSKK---L 381

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  EK+YA LSK   +  +DD G  IG ++   D +G P  V       +D  V ++ R
Sbjct: 382 NEGAEKVYAELSKY-YNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFDSETDGAVTVRDR 439

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            T  +  + + E+ NY   +F 
Sbjct: 440 DTMEQVRIPIAELKNYFEDKFR 461


>gi|213691693|ref|YP_002322279.1| glycyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213523154|gb|ACJ51901.1| glycyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320457784|dbj|BAJ68405.1| glycyl-tRNA synthase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 490

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/440 (15%), Positives = 137/440 (31%), Gaps = 42/440 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +   ++WV SG    +     E L
Sbjct: 33  WDYGPLGVALKDNIKREWWRSMVVTRPDVVGVDTSIILPPEVWVASGHVSVFNDPLVECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               RN    +     E+    +  + +K                  E R    ++R+  
Sbjct: 93  NCHKRNRADKLEESYAEKHGDKMPENGMKDIVCPNCGTRGQWT----EPRDFNMMLRTHL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +             +G            I    
Sbjct: 149 GPVEDENSLHYLRPETAQGIFVDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTR 208

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E       D             +++       E+ +     T D
Sbjct: 209 EFEQMEMEFFVTPGTDEEWHQYWIDARTRWYIDLGVKPENLRHYEHPKEKLSHYSKRTVD 268

Query: 262 VHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  +  F      E + ++ R           +K+S    + F  A G+ +   +     
Sbjct: 269 IEYKFGFQGSDWGELEGIANRTDYDLSAH---SKHSGEDLSYFNQATGEKYVPYVIEPAA 325

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R +   +  ++D                      +AP K +++ +    ++     +
Sbjct: 326 GLTRSLMCFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQT-VAQ 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L      + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +
Sbjct: 385 NLADDLRFNEWMIDYDESGA-IGRRYRRQDEIGTPLCITVDFDTLEDHAVTIRERDTMAQ 443

Query: 427 EDMSLEEVINYASHRFSNNR 446
           E ++L++V +Y + R    R
Sbjct: 444 ERVALDKVADYVAARIGEKR 463


>gi|325962743|ref|YP_004240649.1| glycyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468830|gb|ADX72515.1| glycyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 461

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/452 (14%), Positives = 138/452 (30%), Gaps = 46/452 (10%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNR--TGAIEMSVPTLQSADL 79
           R G + Q      G    + + PLG +  +N+     +   R     + +    +    +
Sbjct: 16  RRGFVFQAGEIYGGSRSAWDYGPLGAELKENIKRQWWQSMVRGREDVVGLDSSVILPRQV 75

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG  + +   ++     + +        EE   +  +                  + 
Sbjct: 76  WEASGHVEVFSDPLVECLSCHKR-YRADHLEEE--YEEKKGRPAENGLKDIACANCGTRG 132

Query: 140 RD-ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GL 190
           +  E +   G++++    +            +       F + L    +         G 
Sbjct: 133 QWTEPQEFSGLLKTYLGPVASEEGLHYLRPETAQGIFVNFNNVLTTSRKKPPFGIGQIGK 192

Query: 191 KSIPMRAESGPIGG-----DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                      I        +  EF V   T E       +             +++   
Sbjct: 193 SFRNEITPGNFIFRTREFEQMEMEFFVEPGTDEEWHKYWMNERMAWYTGLGIREENLRFF 252

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFK 303
               E+ +     T+D+     F      +     GI     F   T  K S    + F 
Sbjct: 253 EHPQEKLSHYSKGTTDIEYRFGFQGSEWGELE---GIANRTDFDLSTHAKASGTDLSYFN 309

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKIS 350
            A  + +   +     G  R   A +  ++                       +AP K +
Sbjct: 310 QATNERYIPYVIEPAAGLTRSFMAFLVDAYTEDEAPNAKGGVDVRTVLKLDPRLAPVKAA 369

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ + + ++      + + A+L K   ++ +DD G  IG ++   D +G P  + V    
Sbjct: 370 VLPL-SRNEDLSPKAKDLGAQLRKNW-NIDFDDAGA-IGRRYRRQDEIGTPFCITVDFDT 426

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + D  V I+ R T  +E +SL++V  Y + R 
Sbjct: 427 LEDQAVTIRERDTMSQERVSLDKVEGYLAARL 458


>gi|300023435|ref|YP_003756046.1| prolyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525256|gb|ADJ23725.1| prolyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 510

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 145/451 (32%), Gaps = 89/451 (19%)

Query: 27  LRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           +R G + + S   G     P G    + + A +      TG      P       +  E+
Sbjct: 22  VRDGDMAETSPVRGCMIIKPWGWGVWERLQAELDARIKDTGHDNCYFPLFIPMSFIAKEA 81

Query: 84  GRYDSYGKEMLRLADRN----------------DKAMIYGPTHEEVMTDIFRSHIKSYRN 127
              + + KEM  +                    ++ +I  PT E ++ D F+  IKSYR+
Sbjct: 82  EHVEGFAKEMAVVTHHRLKNEGGKLVVDPDAKLEEPLIVRPTSETIIGDAFQRWIKSYRD 141

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           LP    Q     R E+R R   +R+ EFL ++ ++                         
Sbjct: 142 LPLLVNQWANVVRWEMRTRL-FLRTAEFLWQEGHTAH----------------------- 177

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
                    A+      +      V     E  +       + P        D+  S+  
Sbjct: 178 ---------ADKDDAVAETLKMLEVYRTFAEDVLAMPVIAGEKPANERFPGADNTYSI-- 226

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                                    E      + ++ G   Y GT ++   +  F+ ADG
Sbjct: 227 -------------------------EAMMQDGKALQAGTSHYLGTHFAEAQNIQFQNADG 261

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDA 364
           K  Y    S+G+ + R++  VI +  D  G+  P ++AP +I ++ +   K  D    + 
Sbjct: 262 KLTYCHTTSWGV-STRLIGGVIMTHGDDDGLRLPPAIAPRQIVIVPMLREKPEDAALIEY 320

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-- 422
           C  +   L   G     D    +   +       G P+ V +G +  S   V    R   
Sbjct: 321 CAALEKDLKAAGIRTLVDAKAVKSAEKRWNWVRRGAPVIVEIGGRDASGGNVTFMRRDKL 380

Query: 423 -TGIR---EDMSLEEVINYASHRFSNNRPVL 449
             G +   + +   + ++ A       +  L
Sbjct: 381 RDGDKVISQTLPRADFVSQAPALLKEIQQAL 411


>gi|118479561|ref|YP_896712.1| histidyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|196044856|ref|ZP_03112090.1| histidyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|225866385|ref|YP_002751763.1| histidyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|229186643|ref|ZP_04313804.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BGSC 6E1]
 gi|118418786|gb|ABK87205.1| histidyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|196024344|gb|EDX63017.1| histidyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|225788488|gb|ACO28705.1| histidine--tRNA ligase [Bacillus cereus 03BB102]
 gi|228596902|gb|EEK54561.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BGSC 6E1]
          Length = 476

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ EK+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYEKVQELLTMMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLAVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|23464742|ref|NP_695345.1| glycyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|59798592|sp|Q8G7W9|SYG_BIFLO RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|23325311|gb|AAN23981.1| glycyl-tRNA synthetase [Bifidobacterium longum NCC2705]
          Length = 490

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/440 (15%), Positives = 137/440 (31%), Gaps = 42/440 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +   ++WV SG    +     E L
Sbjct: 33  WDYGPLGVALKDNIKREWWRSMVVTRPDVVGVDTSIILPPEVWVASGHVSVFNDPLVECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               RN    +     E+    +  + +K                  E R    ++R+  
Sbjct: 93  NCHKRNRADKLEESYAEKHGDKMPENGMKDIVCPNCGIRGQWT----EPRDFNMMLRTHL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +             +G            I    
Sbjct: 149 GPVEDENSLHYLRPETAQGIFVDFKNVMTSSRSRPPFGIANMGKSFRNEITPGNFIFRTR 208

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E       D             +++       E+ +     T D
Sbjct: 209 EFEQMEMEFFVTPGTDEEWHQYWIDARTRWYIDLGVKPENLRHYEHPKEKLSHYSKRTVD 268

Query: 262 VHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  +  F      E + ++ R           +K+S    + F  A G+ +   +     
Sbjct: 269 IEYKFGFQGSDWGELEGIANRTDYDLSAH---SKHSGEDLSYFNQATGEKYVPYVIEPAA 325

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R +   +  ++D                      +AP K +++ +    ++     +
Sbjct: 326 GLTRSLMCFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQT-VAQ 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L      + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +
Sbjct: 385 NLADDLRFNEWMIDYDESGA-IGRRYRRQDEIGTPLCITVDFDTLEDHAVTIRERDTMAQ 443

Query: 427 EDMSLEEVINYASHRFSNNR 446
           E ++L++V +Y + R    R
Sbjct: 444 ERVALDKVADYVAARIGEKR 463


>gi|228954688|ref|ZP_04116711.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228805015|gb|EEM51611.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 423

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 13  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 72

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 73  ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 130 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 188

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S ++ +K+ + L     
Sbjct: 189 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAIYYDKVQELLTMMNV 248

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 249 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 308

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 309 SIERLIMALKAENIELPLEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 369 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 422


>gi|229180680|ref|ZP_04308020.1| Histidyl-tRNA synthetase 2 [Bacillus cereus 172560W]
 gi|228602825|gb|EEK60306.1| Histidyl-tRNA synthetase 2 [Bacillus cereus 172560W]
          Length = 462

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 123/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 52  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 111

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 112 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 168

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 169 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 227

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
            E    C       P+   +   D    L       T      S V+ EK+ + L     
Sbjct: 228 DEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYEKVQELLTMMDV 287

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 288 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 347

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 348 SIERLIMALKAENIELPLEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 407

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 408 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 461


>gi|23336633|ref|ZP_00121840.1| COG0423: Glycyl-tRNA synthetase (class II) [Bifidobacterium longum
           DJO10A]
 gi|189438997|ref|YP_001954078.1| glycyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|189427432|gb|ACD97580.1| Glycyl-tRNA synthetase class II [Bifidobacterium longum DJO10A]
          Length = 490

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/440 (15%), Positives = 137/440 (31%), Gaps = 42/440 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +   ++WV SG    +     E L
Sbjct: 33  WDYGPLGVALKDNIKREWWRSMVVTRPDVVGVDTSIILPPEVWVASGHVSVFNDPLVECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               RN    +     E+    +  + +K                  E R    ++R+  
Sbjct: 93  NCHKRNRADKLEESYAEKHGDKMPENGMKDIVCPNCGTRGQWT----EPRDFNMMLRTHL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +             +G            I    
Sbjct: 149 GPVEDENSLHYLRPETAQGIFVDFKNVMTSSRSRPPFGIANMGKSFRNEITPGNFIFRTR 208

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E       D             +++       E+ +     T D
Sbjct: 209 EFEQMEMEFFVTPGTDEEWHQYWIDARTRWYIDLGVKPENLRHYEHPKEKLSHYSKRTVD 268

Query: 262 VHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  +  F      E + ++ R           +K+S    + F  A G+ +   +     
Sbjct: 269 IEYKFGFQGSDWGELEGIANRTDYDLSAH---SKHSGEDLSYFNQATGEKYVPYVIEPAA 325

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R +   +  ++D                      +AP K +++ +    ++     +
Sbjct: 326 GLTRSLMCFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQT-VAQ 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L      + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +
Sbjct: 385 SLADDLRFNEWMIDYDESGA-IGRRYRRQDEIGTPLCITVDFDTLEDHAVTIRERDTMAQ 443

Query: 427 EDMSLEEVINYASHRFSNNR 446
           E ++L++V +Y + R    R
Sbjct: 444 ERVALDKVADYVAARIGEKR 463


>gi|119191888|ref|XP_001246550.1| hypothetical prolyl-tRNA synthetase [Coccidioides immitis RS]
          Length = 603

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/444 (13%), Positives = 117/444 (26%), Gaps = 80/444 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +   ++  + G    S P   S D L 
Sbjct: 104 QQVLLKGDMLDYYDVSGCFVLKPHSFFIWEEIQSWFNDKIKKMGVKNCSFPLFVSEDVLK 163

Query: 81  VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +       +       PT E VM   +   I+S+R+LP    Q  
Sbjct: 164 KEKDHIEGFAAEVAWVTHAGSSELEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 223

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R             EF                                   K+    
Sbjct: 224 SVVR------------WEF-----------------------------------KNPQPF 236

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +        H   +       +V                            +     Y
Sbjct: 237 LRTREFLWQEGHTAHLTEAAAREEVLQILQHYAHVYEQLLAIPVIRGQKTDKEKFAGGLY 296

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             T + +              + RGI+ G     G  +S     T +    K    +   
Sbjct: 297 TTTVEGYIPA-----------TGRGIQGGTSHGLGQNFSKMFGITVEDPTSKPDEKKPPL 345

Query: 317 YGIGA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDA 364
           +          R +  ++    D +G++ P  VA  +  ++ +                 
Sbjct: 346 HVWQNSWGLSTRTIGVMVMVHSDNRGLVLPPRVADVQTVIVPVGLTAKTPDDVRASINAE 405

Query: 365 CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL- 422
            + + + L   G  V  D   G   G +F   +L G PL++  G    S   V    R  
Sbjct: 406 IDHLASVLEAAGIRVEIDKREGYSPGWKFNDWELKGIPLRLEFGPGESSGGFVTTSRRDI 465

Query: 423 -TGI-REDMSLEEVINYASHRFSN 444
                +  + + E+          
Sbjct: 466 PGKEGKSTIPIAELATAVPALLET 489


>gi|150014998|ref|YP_001307252.1| glycyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|254781874|sp|A6LPL6|SYG_CLOB8 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|149901463|gb|ABR32296.1| glycyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 463

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/439 (13%), Positives = 138/439 (31%), Gaps = 45/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     +      L + ++WV SG    +   ++   
Sbjct: 34  WDYGPLGVEFKNNVKKAWWKKFVQESPYNVGLDSAILMNREVWVASGHVGGFSDPLMDCK 93

Query: 98  --------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ--IQLKFRDELRPRF 147
                   D+  +  +     E    D + +                       ++R   
Sbjct: 94  ECKARFRADKLVEDHMTENGAEVATADGWTNEQLKEYIERNNIVCPKCGKMNYTDIRKFN 153

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSI 193
            + ++ + + +DA S       +       F +  R                 R  +   
Sbjct: 154 LMFKTFQGVTEDAKSEMYLRPETAQGIFVNFKAVQRTSRKKVPFGIAQIGKSFRNEITPG 213

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                +          F       E   +      +F +        + + +    E+  
Sbjct: 214 NFTFRTREFEQMELEFFCKPGTDLEWHKYWKDYCWNFLLN--LNVKAENLRMRDHGEEEL 271

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           + Y+  +            E   ++ R            ++S    +       + +   
Sbjct: 272 SFYSNATSDIEYLFPFGWGELWGIADRTDYDLSKHQ---EHSGQDLSYLDQTTNEKYVPY 328

Query: 314 MGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDA 364
           +    +GA RV  A +  ++D +          +    ++APFK +++ +        + 
Sbjct: 329 VIEPSLGADRVALAFLIEAYDEEELEGGDVRTVMHLHPALAPFKAAILPLSKK---LSEK 385

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              IYA LSK   ++ +D+ G  IG ++   D +G P  + +    + D  V I++R T 
Sbjct: 386 SLDIYAELSKK-FNLDFDETG-SIGKRYRRQDEIGTPYCITIDFDTLEDESVTIRNRDTM 443

Query: 425 IREDMSLEEVINYASHRFS 443
            +E + + E+ NY      
Sbjct: 444 EQERIKISEIENYIQASLE 462


>gi|303313271|ref|XP_003066647.1| prolyl-tRNA synthetase, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240106309|gb|EER24502.1| prolyl-tRNA synthetase, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 603

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/444 (13%), Positives = 117/444 (26%), Gaps = 80/444 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +   ++  + G    S P   S D L 
Sbjct: 104 QQVLLKGDMLDYYDVSGCFVLKPHSFFIWEEIQSWFNDKIKKMGVKNCSFPLFVSEDVLK 163

Query: 81  VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +       +       PT E VM   +   I+S+R+LP    Q  
Sbjct: 164 KEKDHIEGFAAEVAWVTHAGSSELEKKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWN 223

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R             EF                                   K+    
Sbjct: 224 SVVR------------WEF-----------------------------------KNPQPF 236

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +        H   +       +V                            +     Y
Sbjct: 237 LRTREFLWQEGHTAHLTEAAAREEVLQILQHYAHVYEQLLAIPVIRGQKTDKEKFAGGLY 296

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             T + +              + RGI+ G     G  +S     T +    K    +   
Sbjct: 297 TTTVEGYIPA-----------TGRGIQGGTSHGLGQNFSKMFGITVEDPTSKPDEKKPPL 345

Query: 317 YGIGA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDA 364
           +          R +  ++    D +G++ P  VA  +  ++ +                 
Sbjct: 346 HVWQNSWGLSTRTIGVMVMVHSDNRGLVLPPRVADVQTVIVPVGLTAKTPDDVRASINAE 405

Query: 365 CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL- 422
            + + + L   G  V  D   G   G +F   +L G PL++  G    S   V    R  
Sbjct: 406 IDHLASVLEAAGIRVEIDKREGYSPGWKFNDWELKGIPLRLEFGPGESSGGFVTTSRRDI 465

Query: 423 -TGI-REDMSLEEVINYASHRFSN 444
                +  + + E+          
Sbjct: 466 PGKEGKSTIPIAELATAVPALLET 489


>gi|224533738|ref|ZP_03674326.1| prolyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
 gi|224513031|gb|EEF83394.1| prolyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
          Length = 488

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 133/414 (32%), Gaps = 65/414 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      + +I+ ++   TG      P L     L  E    D +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIQSILDKKFKETGHENAYFPMLIPYSFLEREKDHIDGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   +++                                                    
Sbjct: 93  KDAGGESLAEPLVLRP-------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 109 --------TSETIIWNMYSKWIKSYRDLPLKINQWANVVRWEKRTRPFLRTTEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ ++  +   +  +   I     +  +    +            S+ E   
Sbjct: 159 GHTAHATEEEALEETLLILDV-YKRFIEDYLAIPVFCGKKSEKEKFAGAVSTYSI-EALM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+  DGK  +V   S+G+ + R++ A+I    D K
Sbjct: 217 QDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEK 275

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
           G++ P  +AP +I +I I   +        D  + +   L K    V  D D+    G +
Sbjct: 276 GLVLPPRIAPIEIIVIPIFKKEDEINKKILDYSDCVVDTLKKAEFRVEIDKDVRSSPGFR 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFS 443
           F+ A+  G P+++ VG   V  + V I  R    +    +SL+ +++       
Sbjct: 336 FSSAEFKGIPIRLEVGINDVLLNSVTISRRDKDRKFKYQISLDSLVSKVKVELD 389


>gi|224534381|ref|ZP_03674959.1| glycine--tRNA ligase [Borrelia spielmanii A14S]
 gi|224514483|gb|EEF84799.1| glycine--tRNA ligase [Borrelia spielmanii A14S]
          Length = 445

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/445 (13%), Positives = 135/445 (30%), Gaps = 41/445 (9%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIRE-----EQNRTGAIEMSVPTLQS 76
           R G + Q S       G + + PLG +  +N+     +      +N  G   +       
Sbjct: 13  RKGFVFQSSEVYGGLSGAWDYGPLGVELKENIKREWWKSVVYLHENIVG---LDSAIFMR 69

Query: 77  ADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVM-TDIFRSHIKSYRNLPFTF 132
            ++W  SG  D +   M+   +   R     +    +          +  +S+  +  T 
Sbjct: 70  PEIWKASGHIDGFSDSMVDCKNCKSRFRADFVDLAKNCPNCRVGNNFTSPRSFNLMFKTH 129

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
             +      E+  R    +      K+    D +         ++  ++           
Sbjct: 130 IGVVEGSSSEIYLRPETAQGIFVNFKNV--LDSSRLKIPFGIAQVGKAFRNEIVTKNFIF 187

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                E   +       F+      E   +  ++ M+F I +     + +        Q 
Sbjct: 188 RTCEFEQMEMQF-----FVHPKQIDEWFCYWQQNRMNFFIETLKIRPNKLRFKAHDSTQL 242

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH----------IFYFGTKYSLPMSATF 302
            A YA ++     +      E + +  RG               IF +    +      +
Sbjct: 243 -AHYAKSAFDIEYEFPFGFQEVEGIHNRGNYDLTQHSKFSNNPKIFEYHDLLTKERYVPY 301

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                      +      A       +        +     +AP+KI++  +    ++  
Sbjct: 302 VIETSAGLTRSVLMTLCDAYSEEE--LSDGDRRIVLRLHPKLAPYKIAIFPLVKKVELV- 358

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   +IY  L      +F+DD G  IG ++   D +G P  V V    + D  V ++ R 
Sbjct: 359 EVARRIYVELCD-DFHIFYDDSG-TIGKRYRRQDEIGTPYCVTVDYNTIEDETVTVRERN 416

Query: 423 TGIREDMSLEEVINYASHRFSNNRP 447
              ++ + + ++  Y      N + 
Sbjct: 417 NMTQKRIFINDLYAYIKTEILNYKE 441


>gi|307266972|ref|ZP_07548489.1| glycyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918021|gb|EFN48278.1| glycyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 462

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/444 (13%), Positives = 138/444 (31%), Gaps = 56/444 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+  +  +   +     +      L + ++WV SG   S+   ++   
Sbjct: 34  WDYGPLGVELKNNIKRMWWKRFIQQSPYNVGIDTAILMNPEVWVASGHVSSFSDPLMDCK 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +   +        + +        I+ + N     +  + K        +     R+F +
Sbjct: 94  ECKSRFRADQLIEDYIKEKELNISIEGWTNEQLMEFIKEHKVPCPKCGAYNFTDIRKFNL 153

Query: 158 KDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRAESG 200
                  +T +     Y                             ++G           
Sbjct: 154 MFKTYQGVTEDSKSEVYLRPETAQGIFVNFKNVQRTTRKKIPFGIGQIGKSFRNEITPGN 213

Query: 201 PIGGDLSHEFIV---LADTGE-------TQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            I      E +        GE        + +C    ++F +  EN  F D        +
Sbjct: 214 FIFRTREFEQMELEFFCKPGEDMEWFSYWRKYCMDWLLEFGLKEENLRFRD------HKK 267

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGA-DGK 308
           +  + Y+  +            E   ++ R       F          +  ++     G+
Sbjct: 268 EELSHYSTATTDIEYNFPFGWGELWGIANR-----TDFDLRQHMEHSGVDLSYMDPVTGE 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW---------PDSVAPFKISLINIKAHDQ 359
            +        +G  R++ A +  +++ + +             ++AP K +++ +     
Sbjct: 323 KYIPYCIEPSVGVDRLMLAFLIDAYEEEELEDGETRVVLRLHPALAPIKAAVLPLSKK-- 380

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   K+Y +L      V +D+ G  IG ++   D +G P  +       +D  V I+
Sbjct: 381 -LSENAYKLYDQLRNK-FVVDYDETG-SIGKRYRRQDEIGTPFCITYDFDSENDHCVTIR 437

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R T  +  + +EEV  Y   R +
Sbjct: 438 DRDTMEQVRIKIEEVEKYLEERLN 461


>gi|229192615|ref|ZP_04319576.1| Histidyl-tRNA synthetase 2 [Bacillus cereus ATCC 10876]
 gi|228590922|gb|EEK48780.1| Histidyl-tRNA synthetase 2 [Bacillus cereus ATCC 10876]
          Length = 423

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 13  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 72

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 73  ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 130 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 188

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S ++ +K+ + L     
Sbjct: 189 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAIYYDKVQELLTMMDV 248

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 249 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 308

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 309 SIERLIMALKAENIELPLEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 369 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 422


>gi|320036438|gb|EFW18377.1| prolyl-tRNA synthetase [Coccidioides posadasii str. Silveira]
          Length = 603

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/444 (13%), Positives = 117/444 (26%), Gaps = 80/444 (18%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + + +   ++  + G    S P   S D L 
Sbjct: 104 QQVLLKGDMLDYYDVSGCFVLKPHSFFIWEEIQSWFNDKIKKMGVKNCSFPLFVSEDVLK 163

Query: 81  VESGRYDSYGKEMLRLADRNDKAMI----YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +       +       PT E VM   +   I+S+R+LP    Q  
Sbjct: 164 KEKDHIEGFAAEVAWVTHAGSSELEKKIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWN 223

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              R             EF                                   K+    
Sbjct: 224 SVVR------------WEF-----------------------------------KNPQPF 236

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +        H   +       +V                            +     Y
Sbjct: 237 LRTREFLWQEGHTAHLTEAAAREEVLQILQHYAHVYEQLLAIPVIRGQKTDKEKFAGGLY 296

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
             T + +              + RGI+ G     G  +S     T +    K    +   
Sbjct: 297 TTTVEGYIPA-----------TGRGIQGGTSHGLGQNFSKMFGITVEDPTSKPDEKKPPL 345

Query: 317 YGIGA-----MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDA 364
           +          R +  ++    D +G++ P  VA  +  ++ +                 
Sbjct: 346 HVWQNSWGLSTRTIGVMVMVHSDNRGLVLPPRVADVQTVIVPVGLTAKTPDDVRASINAE 405

Query: 365 CEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL- 422
            + + + L   G  V  D   G   G +F   +L G PL++  G    S   V    R  
Sbjct: 406 IDHLASVLEAAGIRVEIDKREGYSPGWKFNDWELKGIPLRLEFGPGESSGGFVTTSRRDI 465

Query: 423 -TGI-REDMSLEEVINYASHRFSN 444
                +  + + E+          
Sbjct: 466 PGKEGKSTIPIAELATAVPALLET 489


>gi|290559900|gb|EFD93222.1| prolyl-tRNA synthetase [Candidatus Parvarchaeum acidophilus
           ARMAN-5]
          Length = 477

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/410 (13%), Positives = 120/410 (29%), Gaps = 60/410 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  +     +  +    G      P L    +   E      +  E+  +
Sbjct: 34  GFAVYRPYGYEIWERSVQYLDSKFKSVGVRNAYFPLLIPESILSKEKEHIKGFNPEVAWV 93

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               D  +                                                    
Sbjct: 94  TMGGDTKLDERLALRP-------------------------------------------- 109

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +      SY+K   SY  +   +   +  +R E+      L    ++    
Sbjct: 110 --------TSETIMYDSYSKWIKSYRDLPLLINQWNTMVRWETKETRLLLRGREVLWQ-- 159

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E       +        E   F        +     A   + S+     +     E   
Sbjct: 160 -EGHCVFRTEEEADNNAREILQFYKQYMEEMLAIPVIAGRKSESEKFAGAVDTYTIEAVL 218

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            +    +       G  +S P    F   +    Y    S+GI +MR +  ++    D K
Sbjct: 219 SNNFMSQAATSHNLGRNFSKPFDIKFLDENNNLQYPFQTSWGI-SMRSIGIMVLIHGDDK 277

Query: 337 GIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAV 394
           G++ P  +AP++ ++I I K       +  +K+  +L+++G      +  +   G +   
Sbjct: 278 GLVLPPHIAPYQCAIIPILKDEKDKVLEYADKVNLKLNELGIRTILFNRDDVSPGWKLND 337

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +D+ G P+++ +G K +    + +K R++     ++  + I+    +   
Sbjct: 338 SDMKGIPIKIQIGKKELESDSIFVKTRISNEASSIAFSD-ISKIKDKLEE 386


>gi|118444423|ref|YP_877137.1| glycyl-tRNA synthetase [Clostridium novyi NT]
 gi|118134879|gb|ABK61923.1| glycyl-tRNA synthetase [Clostridium novyi NT]
          Length = 463

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/455 (13%), Positives = 139/455 (30%), Gaps = 51/455 (11%)

Query: 30  GMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWV 81
           G I Q S    G+   + + PLG +  +NV     +   +     +      L + ++WV
Sbjct: 18  GFIFQGSEIYGGLANSWDYGPLGVEFKNNVKKAWWKRFIQESPYNIGLDSSILMNKEVWV 77

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFR 140
            SG    +   ++   +   +        E +  +         + N     Y  +    
Sbjct: 78  ASGHVGGFSDPLMDCKECKARFRADKLVEEHLAANGKDDVSADGWTNQELMNYIDENNIV 137

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK-----------------MFVSYLR 183
                +      R F +       +T + S   Y +                        
Sbjct: 138 CPKCGKKNYTDIRRFNLMFKTFQGVTEDSSAEIYLRPETAQGIFVNFKNAQRSSRKKVPF 197

Query: 184 IFHRLGLKSIPMR------AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              ++G               +          F       E   +       F +  +  
Sbjct: 198 GIGQIGKSFRNEITPGNFTFRTREFEQMELEFFCKPGTDLEWFHYWKNYCWKFLL--DLG 255

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +D +      E+  + Y+  +            E   V+ R            ++S  
Sbjct: 256 MTEDNLRFRDHGEEELSFYSNATSDIEFLFPFGWGELWGVADRTDYDLKKH---MEHSGQ 312

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFK 348
                     + +   +    +GA RV  A +  ++D + +             ++APFK
Sbjct: 313 ELTYLDPTTNEKYVPYVIEPSLGADRVALAFLVDAYDEEELENGDKRTVLHLHPALAPFK 372

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            +++ +        +    +YA+LSK   ++ +D+ G  IG ++   D +G P  + V  
Sbjct: 373 AAILPLSKK---LSEKALDVYAKLSKK-FNIDYDEAG-SIGKRYRREDEIGTPYCITVDF 427

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             + D+ V ++ R    +  +S++E+  +   +  
Sbjct: 428 DTLEDNTVTVRDRDNMTQIRLSIDELEKFLEEKVQ 462


>gi|228910239|ref|ZP_04074057.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 200]
 gi|228849403|gb|EEM94239.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 200]
          Length = 476

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ +K+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPLEHSIDCYVVALGEKAKDHAAKVAFNLRKAGLSVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|302897411|ref|XP_003047584.1| hypothetical protein NECHADRAFT_85892 [Nectria haematococca mpVI
           77-13-4]
 gi|256728515|gb|EEU41871.1| hypothetical protein NECHADRAFT_85892 [Nectria haematococca mpVI
           77-13-4]
          Length = 1097

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/390 (16%), Positives = 121/390 (31%), Gaps = 73/390 (18%)

Query: 66  AIEMSVPTLQSADLWVESGRYDS--YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
             E+    +  A++    G        + M       D  +   PT E +M   +   I+
Sbjct: 30  YQEV----VVKAEMVEYYGEVAGLFVLRPMTIGDKNLDVPVAIRPTSEAIMYPYYSKWIR 85

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           S+R+LP    Q     R E +     +R+REFL ++ ++  LT E +     ++   Y +
Sbjct: 86  SHRDLPLRLNQWNSVVRWETKQTTPFLRTREFLWQEGHTAHLTEEEAGKEVLEILELYAK 145

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           I+  L                                                     + 
Sbjct: 146 IYEDL------------------------------------------------LAVPVVR 157

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              +  E++   Y      +   L   +P N     RGI+       G  +S       +
Sbjct: 158 GRKTKNERFAGGY------YTMTLEGYIPSNG----RGIQGATSHCLGQNFSKMFDIAVQ 207

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              G+ H     +    + RV+  ++    D KG++ P  VA  ++ ++ +    +   +
Sbjct: 208 DPVGEGHVHVWQNSWAFSTRVIGVMVMIHGDDKGLVLPPRVAKIQVVIVPVGISKKTTAE 267

Query: 364 A-------CEKIYARLSK-VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                    ++I A L       V  D   G     +F   +L G PL++  G K     
Sbjct: 268 EKNRLLDQADEIRATLRNDARLRVDVDAREGYTPARKFNDWELKGVPLRLEFGPKDAKKG 327

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            V    R    +  + + E+          
Sbjct: 328 VVSYTKRYNNEKGTIPIAEITTTVPKMLEE 357


>gi|225021787|ref|ZP_03710979.1| hypothetical protein CORMATOL_01815 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945483|gb|EEG26692.1| hypothetical protein CORMATOL_01815 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 466

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/436 (14%), Positives = 137/436 (31%), Gaps = 44/436 (10%)

Query: 40  YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           + + PLG +  +N+         Q R   + +    +    +W  SG  +++   ++   
Sbjct: 39  WDYGPLGVELKENIKKQWWRTFVQGRADMVGLDSSIILPRQVWEASGHVETFTDPLVESL 98

Query: 97  -ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  +A      +E+       + +    +              E +   G+M++   
Sbjct: 99  HTHKRYRADHLLEAYEQKHGHPPANGLADVPDPETGQPGAWT----EPQMFSGLMKTFLG 154

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESGP 201
            + +          +       F +                    R  +        +  
Sbjct: 155 PVDNEQGLHYMRPETAQGIFINFKNVQTTARMKPPFGIGQVGKAFRNEITPGNFIFRTRE 214

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                   F+  +D  E          D+ I     + D++   +   E+     A T D
Sbjct: 215 FEQMEIEYFVSPSDAPEKFQEWVDACWDWFI-DLGINPDNMRQFDVPKEERAHYSAGTID 273

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGI 319
                 F      + +   G+     +  G+  KYS    + F    G+ +   +     
Sbjct: 274 FEYRFGFAGSEWGELM---GVANRTDYDLGSHIKYSGEDLSYFDQVTGERYVPYVIEPSF 330

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++                       +AP K++++ +   D       E
Sbjct: 331 GLTRAMMAFLCDAYHEDEAPNAKGGVDKRTVLRLDRRLAPVKVAVLPLSKKD-TLLPTAE 389

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            I A L K+  ++ +D  G  IG ++   D +G P  V V    + D  V ++ R T  +
Sbjct: 390 AIAADLRKLW-NIDYDIAGA-IGRRYRRQDEIGTPFCVTVDFDSLEDRSVTVRERDTMAQ 447

Query: 427 EDMSLEEVINYASHRF 442
           E ++++E+  Y   R 
Sbjct: 448 ERVAIDELPAYLGARL 463


>gi|51598627|ref|YP_072815.1| glycyl-tRNA synthetase [Borrelia garinii PBi]
 gi|59798510|sp|Q661P8|SYG_BORGA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|51573198|gb|AAU07223.1| glycyl-tRNA synthetase [Borrelia garinii PBi]
          Length = 445

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/443 (14%), Positives = 137/443 (30%), Gaps = 37/443 (8%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G + Q S       G + + PLG +   N+ +   +         +           +
Sbjct: 13  RKGFVFQSSEVYGGLSGAWDYGPLGVELKKNIKSEWWKSMV-YLHENIVGLDSAIFMRPE 71

Query: 79  LWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVM-TDIFRSHIKSYRNLPFTFYQ 134
           +W  SG  D +   M+   D   R     I    +          +  +S+  +  T   
Sbjct: 72  IWRASGHIDGFSDSMVDCKDCKSRFRADFIDLSKNCPNCKVGNNFTSPRSFNLMFKTHIG 131

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +      E+  R    +     +      D +         ++  ++             
Sbjct: 132 VVEDSSSEIYLRPETAQG--IFVNFRNVLDSSRLKIPFGIAQVGKAFRNEIVTKNFIFRT 189

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
              E   +       F+      E   +  ++ M+F I +     D +        Q  A
Sbjct: 190 CEFEQMEMQF-----FVHPKQIDEWFCYWQQNRMNFFIETLKIRPDKLRFKAHDSTQL-A 243

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQ 313
            YA ++     +      E + +  RG             + P    +      + +   
Sbjct: 244 HYAKSAFDIEYEFPFGFQEVEGIHNRGNYDLT--QHSKFSNNPKIFEYHDLLTKERYVPH 301

Query: 314 MGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +     G  R V   + +++             +     +AP+KI++  +    ++  + 
Sbjct: 302 VIETSAGLTRSVLMTLCNAYSEEELSDGDKRIVLRLHPKLAPYKIAIFPLVKKVELV-EI 360

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +IY  L      +F+DD G  IG ++   D +G P  V V    + D  V ++ R   
Sbjct: 361 ARRIYIELCD-DFHIFYDDSG-TIGKRYRRQDEIGTPYCVTVDYSTIEDETVTVRERNNM 418

Query: 425 IREDMSLEEVINYASHRFSNNRP 447
            ++ + + ++ +Y      N + 
Sbjct: 419 TQKRIFINDLYSYIKTEILNYKE 441


>gi|147669357|ref|YP_001214175.1| glycyl-tRNA synthetase [Dehalococcoides sp. BAV1]
 gi|146270305|gb|ABQ17297.1| glycyl-tRNA synthetase [Dehalococcoides sp. BAV1]
          Length = 443

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/439 (14%), Positives = 124/439 (28%), Gaps = 44/439 (10%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G I   S    G+   + + PLG +   NV          +R   + +    +    +
Sbjct: 20  RRGFIFPSSEIYGGLNSCWDYGPLGVELKRNVKEAWWRYMVRDRDDVVGLDASIIMHPRV 79

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG    +   M+                E           +S     F         
Sbjct: 80  WEASGHVAGFSDPMVDCKKC-KMRWRPTDLAEPKCPACGGELTESR---QFNLMFKTFMG 135

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
             E             +     +        ++  N           ++G          
Sbjct: 136 PIEEAA--------SIVYLRPETAQGIFVNFENVLNTTRKKLPFGIAQIGKSFRNEITTG 187

Query: 200 GPIGGDLSHEFIV-------LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             I      E +         AD    + +       +     N    + + L +     
Sbjct: 188 NFIFRSREFEQMELEYFVKPGADDSCLEEWTQYRLNWYKNLGMN---PENLRLRAHRSDE 244

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A YA               E + ++ R            KYS      F     +    
Sbjct: 245 LAHYAKGCYDVEYNFPMGWSELEGIANRRDFDLTQH---AKYSGKSLEYFDEETKEHFVP 301

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
            +     G  R   A +  ++  +              ++AP+KI+++ +    ++  D 
Sbjct: 302 YVIEPSAGVERSTLAFLIDAYAEEPDKDEIRTVLHLHPALAPYKIAVLPLSKK-EILSDY 360

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             KIYA L K    V +DD  + IG ++   D +G P  V V  + + D  V ++ R + 
Sbjct: 361 ARKIYADLRKCWM-VAYDDS-QSIGRRYRRQDEIGTPYCVTVDFQSLEDGMVTVRDRDSM 418

Query: 425 IREDMSLEEVINYASHRFS 443
            +  + + E+    + + S
Sbjct: 419 AQIRVKVSELSYILAAKLS 437


>gi|160940874|ref|ZP_02088214.1| hypothetical protein CLOBOL_05766 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436118|gb|EDP13885.1| hypothetical protein CLOBOL_05766 [Clostridium bolteae ATCC
           BAA-613]
          Length = 462

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/438 (14%), Positives = 139/438 (31%), Gaps = 44/438 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++        + +    L ++  W+ SG    +   ++   
Sbjct: 32  WDYGNLGVELKNNVKRAWWQKFIMESPYNVGVDCAILMNSQTWIASGHLGGFSDPLMDCK 91

Query: 98  DRNDK--AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              ++  A      + +         +  +       Y                   R+F
Sbjct: 92  QCKERFRADKLIEDYNDAHGIQMEGSVDGWSQEQMKQYIDDNNICCPSCGAHDFTDIRQF 151

Query: 156 LMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP----- 201
            +       +T +     Y +          F +  R   +     I    +S       
Sbjct: 152 NLMFKTFQGVTEDAKSTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEITP 211

Query: 202 --------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                       +  EF    DT        K+F    + S     D++ + +   E+ +
Sbjct: 212 GNFTFRTREFEQMELEFFCKPDTDLEWFAYWKEFCINWLRSLGIKDDELRARDHSPEELS 271

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
             Y+  +            E   ++ R            K S    + F     + +   
Sbjct: 272 -FYSKATTDLEYLFPFGWGELWGIADRTDYDLSQHQ---KVSGQDMSYFDDETKERYIPY 327

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDA 364
           +    +GA RV  A + +++D + I          +  ++AP K+ ++ +        + 
Sbjct: 328 VIEPSLGADRVTLAFLCAAYDEEEIGEGDVRTVLHFHPAIAPVKVGVLPLSKK---LNEG 384

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            EKIY  LSK   +  +DD G  IG ++   D +G P  +        D  V ++ R T 
Sbjct: 385 AEKIYTELSKY-FNCEFDDRG-NIGKRYRRQDEIGTPFCITYDFDSEEDHAVTVRDRDTM 442

Query: 425 IREDMSLEEVINYASHRF 442
            +  + + ++ +Y + +F
Sbjct: 443 EQVRVPIADLKDYFAEKF 460


>gi|118566325|gb|ABL01534.1| tRNA synthetase [Mycosphaerella fijiensis]
          Length = 182

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 6/187 (3%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD         L     HQ S G   +LP G    +++ A ++EE  R G  E++ P + 
Sbjct: 1   RDHRKIGQDQELF--FFHQMSPGSAFFLPHGMIIYNSLMAYLKEEYWRRGYQEVASPNMY 58

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           ++ LW +SG +  Y ++M    D         P +      +F    +SYR LP      
Sbjct: 59  NSALWKQSGHWQHYHEDMFTF-DVEKDKWALKPMNCPGHCLLFAHRERSYRELPMRIADF 117

Query: 136 QLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
            +  R+E      G+ R R F   D + F  T    +   N +F   + ++ R G K   
Sbjct: 118 GILHRNEASGALTGLTRVRRFQQDDTHIFC-TEAQIEQEINGLFDFMMAVYGRFGFKFRM 176

Query: 195 MRAESGP 201
            +  + P
Sbjct: 177 -KLSTRP 182


>gi|291556422|emb|CBL33539.1| glycyl-tRNA synthetase [Eubacterium siraeum V10Sc8a]
          Length = 458

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/448 (14%), Positives = 140/448 (31%), Gaps = 43/448 (9%)

Query: 30  GMI---HQHSKGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWV 81
           G I    +   G+   + + PLG +  +N+ +  R++  +     +      L +   WV
Sbjct: 19  GFIYPGSEIYGGLANTWDFGPLGVELKNNIKSAWRKKFIQECKYNVGLDSAILMNPQTWV 78

Query: 82  ESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            SG    +   ++       R+    +                +  Y            K
Sbjct: 79  ASGHIGGFSDPLMDCKACKTRHRADNLIEDFDGTNCAGWSNEQMMDYIREKGITCPNCGK 138

Query: 139 FRD-ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------G 189
               ++R    + ++ + + +D+ S       +       F++  R   +         G
Sbjct: 139 ADFTDIRQFNLMFKTFQGVTEDSKSELYLRPETAQGIFVNFMNIQRTTRKKVPFGVAQVG 198

Query: 190 LKSIPMRAESGPIGGDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                       I      E     F     T     +  KD+    + S   + +++  
Sbjct: 199 KSFRNEITPGNFIFRVREFEQMELEFFCKPGTDLDWFYFWKDYCKKWLLSLGINEENLRL 258

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +   E+    Y+  +            E   V+ R            K S      F  
Sbjct: 259 RDHDKEEL-CFYSKATTDFEYLFPFGWGELWGVADRTDYDLTQH---IKTSGQKMEYFDP 314

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIK 355
              + +   +    +G  R+  AVI  ++D            + +   +AP K +++ + 
Sbjct: 315 ETNEKYVPYVIEPSLGVERLFLAVITEAYDEEQLEDGTTRNVMHFHPYLAPVKAAVLPLS 374

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +   +I   LSK    V +DD G  IG ++   D +G P  +      V D  
Sbjct: 375 KK---LANKAGEIADELSKY-FCVDYDDAGA-IGKRYRRQDEIGTPFCITYDFDSVEDGC 429

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           V ++ R +  +E M + +V  Y   + +
Sbjct: 430 VTVRERDSMKQERMPIADVKKYIEDKIA 457


>gi|167750313|ref|ZP_02422440.1| hypothetical protein EUBSIR_01287 [Eubacterium siraeum DSM 15702]
 gi|167656673|gb|EDS00803.1| hypothetical protein EUBSIR_01287 [Eubacterium siraeum DSM 15702]
 gi|291529864|emb|CBK95449.1| glycyl-tRNA synthetase [Eubacterium siraeum 70/3]
          Length = 458

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/448 (15%), Positives = 140/448 (31%), Gaps = 43/448 (9%)

Query: 30  GMI---HQHSKGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWV 81
           G I    +   G+   + + PLG +  +N+ +  R++  +     +      L +   WV
Sbjct: 19  GFIYPGSEIYGGLANTWDFGPLGVELKNNIKSAWRKKFIQECKYNVGLDSAILMNPQTWV 78

Query: 82  ESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            SG    +   ++       R+    +                +  Y            K
Sbjct: 79  ASGHIGGFSDPLMDCKACKTRHRADNLIEDFDGTNCAGWSNEQMMDYIREKGITCPNCGK 138

Query: 139 FRD-ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------G 189
               ++R    + ++ + + +D+ S       +       F++  R   +         G
Sbjct: 139 ADFTDIRQFNLMFKTFQGVTEDSKSELYLRPETAQGIFVNFMNIQRTTRKKVPFGVAQVG 198

Query: 190 LKSIPMRAESGPIGGDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                       I      E     F     T     +  KD+    + S   + +++  
Sbjct: 199 KSFRNEITPGNFIFRVREFEQMELEFFCKPGTDLDWFYFWKDYCKKWLLSLGINEENLRL 258

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +   E+    Y+  +            E   V+ R            K S      F  
Sbjct: 259 RDHDQEEL-CFYSKATTDFEYLFPFGWGELWGVADRTDYDLTQH---IKTSGQKMEYFDP 314

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIK 355
              + +   +    +G  R+  AVI  ++D            + +   +AP K +++ + 
Sbjct: 315 ETNEKYVPYVIEPSLGVERLFLAVITEAYDEEQLEDGTTRNVMHFHPYLAPVKAAVLPLS 374

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  D   +I   LSK    V +DD G  IG ++   D +G P  +      V D  
Sbjct: 375 KK---LADKAGEIADELSKY-FCVDYDDAGA-IGKRYRRQDEIGTPFCITYDFDSVEDGC 429

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           V ++ R +  +E M + +V  Y   R +
Sbjct: 430 VTVRERDSMKQERMPIADVKKYIEDRIA 457


>gi|302876579|ref|YP_003845212.1| glycyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|307687254|ref|ZP_07629700.1| glycyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|302579436|gb|ADL53448.1| glycyl-tRNA synthetase [Clostridium cellulovorans 743B]
          Length = 463

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/437 (12%), Positives = 134/437 (30%), Gaps = 41/437 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     +      L + ++WV SG    +   ++   
Sbjct: 34  WDYGPLGVEFKNNIKKAWWKKFIQESPYNVGLDSAILMNPEVWVASGHVGGFSDPLMDCK 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           +   +        + +  +         +       Y            +      R+F 
Sbjct: 94  ECKARFRADKIVEDHMAANGAEVASADGWSKEQLKEYIDNNNIDCPKCGKHNYTEIRQFN 153

Query: 157 MKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRAES 199
           +       +T +     Y                             ++G          
Sbjct: 154 LMFKTFQGVTEDAKAEIYLRPETAQGIFVNFKSVQRTSRKKIPFGIGQIGKSFRNEITPG 213

Query: 200 GPIGGDLSHEFIV----LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
             I      E +          + + F       F      +  ++ +      E+  + 
Sbjct: 214 NFIFRTREFEQMELEFFCKPGTDLEWFSYWKNYCFNFLKNLSMKEENLRFRDHGEEELSF 273

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y+  +     K      E   ++ R     +      K+S            + +   + 
Sbjct: 274 YSNATSDIEFKFPFGWGELWGIADRTDYDLNQH---AKHSGQDLNYLDPVTNEKYVPYVI 330

Query: 316 SYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACE 366
              +GA RV+ A +  ++D + +             ++APFK +++ +        +   
Sbjct: 331 EPSLGADRVLLAFLCDAYDEEELEDGDSRTVLRLHPALAPFKAAVMPLSKK---LSEKSL 387

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++Y +LSK   +V +D+ G  IG ++   D +G P  + +    + D  V ++ R T  +
Sbjct: 388 EVYEKLSKK-FNVDYDEAG-SIGKRYRREDEIGTPYCITIDFDTLEDDSVTVRDRDTMNQ 445

Query: 427 EDMSLEEVINYASHRFS 443
             + ++E+  +   +  
Sbjct: 446 VRIKIDELEKFIEEKLE 462


>gi|312149307|gb|ADQ29378.1| prolyl-tRNA synthetase [Borrelia burgdorferi N40]
          Length = 488

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 132/414 (31%), Gaps = 65/414 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      + +I+ ++   TG      P L     L  E    D +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIQSILDKKFKETGHENAYFPMLIPYSFLEREKDHIDGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   +++                                                    
Sbjct: 93  KDAGGESLAEPLVLRP-------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 109 --------TSETIIWNMYSKWIKSYRDLPLKINQWANVVRWEKRTRPFLRTTEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ ++  +   +  +   I     +  +    +            S+ E   
Sbjct: 159 GHTAHATEEEALEETLLILDV-YKRFIEDYLAIPVFCGKKSEKEKFAGAVSTYSI-EALM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+  DGK  +V   S+G+ + R++ A+I    D K
Sbjct: 217 QDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEK 275

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
           G++ P  +AP +I +I I            D  + +   L K    V  D D+    G +
Sbjct: 276 GLVLPPRIAPIEIIVIPIFKKGDEINKKILDYSDCVVDTLKKAEFRVEIDKDVRSSPGFR 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFS 443
           F+ A+  G P+++ VG   V  + V I  R    +    +SL+ +++       
Sbjct: 336 FSSAEFKGIPIRLEVGINDVLLNSVTISRRDKDRKFKYQISLDSLVSKVKVELD 389


>gi|229071912|ref|ZP_04205123.1| Histidyl-tRNA synthetase 2 [Bacillus cereus F65185]
 gi|228711208|gb|EEL63172.1| Histidyl-tRNA synthetase 2 [Bacillus cereus F65185]
          Length = 423

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 13  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 72

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 73  ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 130 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 188

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ +K+ + L     
Sbjct: 189 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDV 248

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 249 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 308

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 309 SIERLIMALKAENIELPLEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 369 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEQL 422


>gi|227503138|ref|ZP_03933187.1| glycyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
 gi|306836623|ref|ZP_07469589.1| glycyl-tRNA synthetase beta subunit [Corynebacterium accolens ATCC
           49726]
 gi|227076199|gb|EEI14162.1| glycyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
 gi|304567453|gb|EFM43052.1| glycyl-tRNA synthetase beta subunit [Corynebacterium accolens ATCC
           49726]
          Length = 459

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/432 (13%), Positives = 140/432 (32%), Gaps = 36/432 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEM---- 93
           + + PLG +  +N+         ++    + +    +Q   +WV SG  + +   +    
Sbjct: 32  WDYGPLGVELKENIKRQWWRHMVQSRPDVVGVDTSVIQPRQVWVSSGHVEVFTDPLVESR 91

Query: 94  ----LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT----FYQIQLKFRDELRP 145
                  AD   +A      HE        +  ++ +   +T    F  +   F   +  
Sbjct: 92  HTGKRYRADHLIEAYEEKHGHEPENGLADINDPETGQPGDWTEPKAFSGLLKTFLGPVDD 151

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+   R    +  +        S        ++ +    R  +        +      
Sbjct: 152 EQGLHYLRPETAQGIFINFKNVMTSSRMKPPFGIANIGKSFRNEITPGNFIFRTREFEQM 211

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               F+   +  E   +   D   +         +++       E+ +     T DV   
Sbjct: 212 EMEFFVKPGEDEEWHQYWIDDRYKWYT-DLGIKEENLRLYEHPKEKLSHYSKRTVDVEYA 270

Query: 266 KLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             F      E + V+ R      +     K S    + +  A+ +     +     G  R
Sbjct: 271 FGFKGSKWGELEGVANRTDYDLSVH---DKGSGEDLSYYDQANDERWIPYVIEPAAGLGR 327

Query: 324 VVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + A +  ++D +                    +AP K++++ +   +++      ++  
Sbjct: 328 SMMAFLVDAYDEEEAPNAKGGTDKRVVLRLDRRLAPIKVAVLPLSKKEELSTP-ARELAD 386

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L     +V +D  G  IG ++   D +G P  V      + D+ V ++ R T  +E + 
Sbjct: 387 KLRAYW-NVDFDVSGA-IGRRYRRQDEVGTPFCVTFDFDSLEDNAVTVRERDTMEQERVK 444

Query: 431 LEEVINYASHRF 442
           +E++ +Y + R 
Sbjct: 445 IEDLESYLAARL 456


>gi|239917142|ref|YP_002956700.1| glycyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
 gi|281414391|ref|ZP_06246133.1| glycyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
 gi|239838349|gb|ACS30146.1| glycyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
          Length = 460

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/460 (14%), Positives = 147/460 (31%), Gaps = 62/460 (13%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNA-----IIREEQNRTGAIEMSVPTLQS 76
           R G + Q      G    + + PLG +  +N+ A      +R  ++  G   +    +  
Sbjct: 16  RRGFVFQAGEIYGGSRSAWDYGPLGVELKENIKAEWWKTFVRSREDMVG---LDSSIILP 72

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +W  SG  +++   ++     + +                 +   +    P    Q  
Sbjct: 73  RAVWEASGHVETFTDPLVECTQCHRRHRQDHLLEAFEAKKGRPAEGMAEIVCPDCGTQGA 132

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH---------- 186
                E +   G++++    + +          +       F++ L              
Sbjct: 133 WT---EPQLFSGLVKTYLGPVDNEEGLHYLRPETAQGIFVNFLNVLGAARKKPPFGIGQI 189

Query: 187 ----RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
               R  +        +          F+  A+ G+      +D  D         F D+
Sbjct: 190 GKAFRNEITPGNFIFRTREFEQMEIEYFVPPAEAGQHFDRWVEDCWD--------WFIDL 241

Query: 243 ISLNSIVEQWTAP-----YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYS 295
               + + ++  P     + + + +  E  F     +      GI     +  G  T++S
Sbjct: 242 GIDPAHLRKFDVPADERAHYSDATIDLEYDFGFTGGDGWGELMGIANRTDYDLGRHTEHS 301

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPD 342
                 F  A+ + +   +     G  R + A +  ++                      
Sbjct: 302 GTKMQYFDQANNEHYTPYVIEPSFGLTRAMMAFLVDAYAEDEAPNAKGGVDVRTVLKLDP 361

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            +AP K +++ +    ++   A + + A L  +  ++  DD G  IG ++   D +G P 
Sbjct: 362 RLAPVKAAVLPLSRKAELQ-PATQSLAAELRGLW-NIETDDSGA-IGRRYRRQDEIGTPF 418

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + V    + D  V I+ R T  +E ++L +V +Y   R 
Sbjct: 419 CITVDFDTLEDQAVTIRERDTMAQERVALSQVKSYLLERL 458


>gi|169351083|ref|ZP_02868021.1| hypothetical protein CLOSPI_01862 [Clostridium spiroforme DSM 1552]
 gi|169292145|gb|EDS74278.1| hypothetical protein CLOSPI_01862 [Clostridium spiroforme DSM 1552]
          Length = 457

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/433 (13%), Positives = 138/433 (31%), Gaps = 40/433 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+  +  +   +     +        +  +W  SG    +   ++   
Sbjct: 33  WDYGPLGVEMKNNIKQLWWKRFIQESPYNVGLDSAIFMNPRVWEASGHVGGFSDPLIDCK 92

Query: 98  DRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRS 152
           +   +     +I                  +Y            K    ++R    +  +
Sbjct: 93  ECKTRHRADKLIENYDPSVHSEGWTSEETVNYIKEHQIVCPNCGKSNFTDVRQFKLMFET 152

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG 204
           +  +++DA S       +       F +  R   +         G            I  
Sbjct: 153 KMGVVEDAKSTVYLRPETAQGIFVNFKNIQRTTRKKVPFGIGQIGKAFRNEITPGNFIFR 212

Query: 205 DLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
               E     F     T        KD+    +       +++   +   E+ +     T
Sbjct: 213 MREFEQMELEFFCKPGTDLEWFEYWKDYCKKFLKDLGIKDENLRFRDHEKEELSFYSKGT 272

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYG 318
            DV          E   ++ R           +K S      +      + +   +    
Sbjct: 273 CDV-EYNFPFGWGELWGIADRTDYDLTQHQNHSKKS----LEYLDPTTNEKYIPYVIEPS 327

Query: 319 IGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           +GA R+  +V+  S++ +          +    ++AP+K++++ +        D   ++Y
Sbjct: 328 VGADRLFLSVLCDSYEEETLEDGETRVVMKLLPALAPYKVAILPLTKK---QSDKASEVY 384

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           + L        +D  G+ IG ++   D +G P  V V    + D+ V ++ R T  +  +
Sbjct: 385 SML-AKHFSCEFDVAGQ-IGKRYRRQDAIGTPFCVTVDFDTLEDNTVTVRDRDTMEQIRL 442

Query: 430 SLEEVINYASHRF 442
            ++E+++Y S + 
Sbjct: 443 PIDELVDYISKKV 455


>gi|224476673|ref|YP_002634279.1| glycyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254781880|sp|B9DNL1|SYG_STACT RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|222421280|emb|CAL28094.1| putative glycyl-tRNA synthetase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 463

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/441 (14%), Positives = 143/441 (32%), Gaps = 47/441 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++        + +    L +   W  SG   ++   M+   
Sbjct: 32  WDYGPLGVELKNNIKQAWWKKFISQSPYNVGLDAAILMNPRTWEASGHLGNFNDPMIDNK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS---RE 154
           D +          E+ M +           L F   +  +       P  G       R+
Sbjct: 92  D-SKIRYRADKLIEDYMQNEKGDENFIADGLSFDEMKRIIDEEGIKDPVSGTSNWTDIRQ 150

Query: 155 FLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFH-----------RLGLKSIPMRA 197
           F +       +T + +   +        +FV+Y  +             ++G        
Sbjct: 151 FNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEIT 210

Query: 198 ESGPIGGDLSHEFIV---LADTGETQVFCSKDFMDFPIPSEN--TDFDDIISLNSIVEQW 252
               I      E +        GE ++     +  F           +D I L    E  
Sbjct: 211 PGNFIFRTREFEQMELEFFCKPGE-EIEWQNYWKTFAEKWLLDLGIKNDSIRLRDHDEDE 269

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            + Y+  +     K      E   +++R           +++S            + +  
Sbjct: 270 LSHYSNATTDIEYKFPFGWGELWGIASRTDYDLKQH---SEFSGDDFKYHDPETNEKYIP 326

Query: 313 QMGSYGIGAMRVVAAVIESSHDG----------KGIIWPDSVAPFKISLINIKAHDQVCR 362
                 +GA RV  A +  ++D             + +  ++AP+K +++ +        
Sbjct: 327 YCIEPSLGADRVTLAFLCDAYDREGVEGSKDERTVLHFHPAIAPYKAAVLPLSKK---LS 383

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   K+Y +LS+    V +D+  + IG ++   D +G P  +      + D +V ++ R 
Sbjct: 384 EEAIKVYEQLSE-NFTVDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDQQVTVRDRD 441

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +  +  M + E+ ++ S +  
Sbjct: 442 SMEQVRMPISELNDFISEKVR 462


>gi|42524428|ref|NP_969808.1| prolyl-tRNA synthetase [Bdellovibrio bacteriovorus HD100]
 gi|81616476|sp|Q6MIW2|SYP_BDEBA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|39576637|emb|CAE80801.1| proS [Bdellovibrio bacteriovorus HD100]
          Length = 499

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/418 (13%), Positives = 125/418 (29%), Gaps = 57/418 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +N+  ++      TG +    P L     L  E+   + + KE    
Sbjct: 35  GCMVIKPWGYAVWENMQGVLDRMFKDTGHVNAYFPLLIPLSFLEKEAAHVEGFAKE---- 90

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                    + + +   +       E  
Sbjct: 91  ----------------------------------CAVVTHHRLKGDGNGKLIPDGELEEP 116

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           +        +     H + K   SY  +   +      MR E        + EF+     
Sbjct: 117 LI---IRPTSETIIGHQFAKWVKSYRDLPILVNQWCNVMRWEMRTRMFLRTAEFL--WQE 171

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T    +K+  +  +   N  + +       +                    ++ E   
Sbjct: 172 GHTVHATAKEAQEETLQMLNV-YSEFAEQYMAMPVIKGMKTPDERFPGAVDTYTI-EALM 229

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++      +  A+GK+ +    S+G+ + R++  +I +  D  
Sbjct: 230 QDKKALQAGTSHFLGQNFAKASEIKYLSAEGKEEFAWTTSWGV-STRLIGGLIMTHSDDN 288

Query: 337 GIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVG-----CDVFWDDMGEQI 388
           G + P  +AP  + +I I  +D+      D  + +   L           V  DD   + 
Sbjct: 289 GFVVPPRLAPLHVVIIPIYRNDEERAQVLDYVKALEKDLKAQNYVGSSVRVKIDDRDMRG 348

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEI--KHRLTGIREDMSLEEVINYASHRFSN 444
           G +       G P++V VG + ++  +V +  + R    +  M     +   ++    
Sbjct: 349 GEKAWQYIKQGVPVRVEVGPRDMAKGEVFVGRRDRGPKEKASMERNAFVANITNLLQE 406


>gi|224534632|ref|ZP_03675206.1| proline--tRNA ligase [Borrelia spielmanii A14S]
 gi|224514101|gb|EEF84421.1| proline--tRNA ligase [Borrelia spielmanii A14S]
          Length = 488

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/415 (15%), Positives = 135/415 (32%), Gaps = 65/415 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      +++I+ ++   TG      P L     L  E    D +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIHSILDKKFKETGHENAYFPMLIPYGFLEKEKDHIDGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   +++                                                    
Sbjct: 93  KDAGGESLAEPLVLRP-------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 109 --------TSETIIWNMYSKWIKSYRDLPLKINQWANVIRWEKRTRPFLRTTEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ ++  +   +  +   I     +  +    +            S+ E   
Sbjct: 159 GHTAHATEEEALEETLLILDV-YKRFIEDYLAIPVFCGKKSEKEKFAGAVSTYSV-EALM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+  DGK  YV   S+G+ + R++ A+I    D +
Sbjct: 217 QDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMRYVFASSWGV-STRLIGALIMVHSDER 275

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
           G+I P  +AP +I +I I   +        D  + +   L K    V  D D+    G +
Sbjct: 276 GLILPPRIAPIEIIVIPIFKKEDKINKKILDYSDCVVQALKKAEFRVEIDKDIRSSPGFR 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFSN 444
           F+ A+  G P+++ +G   +  + V I  R    +    +SL+ +++       +
Sbjct: 336 FSSAEFKGIPIRLEIGINDILLNSVTIIRRDKDKKFKYQISLDSLVSKVKAELDS 390


>gi|218899572|ref|YP_002447983.1| histidyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228902931|ref|ZP_04067072.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 4222]
 gi|228960677|ref|ZP_04122321.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228967479|ref|ZP_04128507.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218545625|gb|ACK98019.1| histidyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228792194|gb|EEM39768.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228798983|gb|EEM45956.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228856715|gb|EEN01234.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis IBL 4222]
          Length = 423

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 13  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 72

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 73  ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 130 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 188

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ +K+ + L     
Sbjct: 189 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDV 248

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 249 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 308

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 309 SIERLIMALKAENIELPLEHSIDCYVVALGEKAKDHAAKVAFNLRKAGLSVEKDYLDRKM 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 369 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 422


>gi|226320972|ref|ZP_03796518.1| prolyl-tRNA synthetase [Borrelia burgdorferi 29805]
 gi|226233623|gb|EEH32358.1| prolyl-tRNA synthetase [Borrelia burgdorferi 29805]
          Length = 488

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 132/414 (31%), Gaps = 65/414 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      + +I+ ++   TG      P L     L  E    D +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIQSILDKKFKETGHENAYFPMLIPYSFLEREKDHIDGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   +++                                                    
Sbjct: 93  KDAGGESLAEPLVLRP-------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 109 --------TSETIIWNMYSKWIKSYRDLPLKINQWANVVRWEKRTRPFLRTTEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ ++  +   +  +   I     +  +    +            S+ E   
Sbjct: 159 GHTAHATEEEALEETLLILDV-YKRFIEDYLAIPVFCGKKSEKEKFAGAVSTYSI-EALM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+  DGK  +V   S+G+ + R++ A+I    D K
Sbjct: 217 QDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEK 275

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
           G++ P  +AP +I +I I            D  + +   L K    V  D D+    G +
Sbjct: 276 GLVLPPRIAPIEIIVIPIFKKGDEINKKILDYSDCVVDTLKKAEFRVEIDKDVRSSPGFR 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFS 443
           F+ A+  G P+++ VG   V  + V I  R    +    +SL+ +++       
Sbjct: 336 FSSAEFKGIPIRLEVGINDVLLNSVTISRRDKDRKFKYQISLDSLVSKVKVELD 389


>gi|172041003|ref|YP_001800717.1| glycyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109]
 gi|171852307|emb|CAQ05283.1| glycyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109]
          Length = 459

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/437 (13%), Positives = 138/437 (31%), Gaps = 44/437 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           + + PLG +  +N+          +R   + +    +    +W  SG  D +   ++   
Sbjct: 32  WDYGPLGVELKENIKRQWWRSMVTSRGDVVGLDSSVILPRRVWEVSGHVDVFTDPLVESL 91

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  +A      +EE       + +    +              E R   G+M++   
Sbjct: 92  YTHKRYRADHLLEAYEEKHGHPPANGLADINDPETGQPGKWT----EPRAFSGLMKTYLG 147

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESGP 201
            + D          +       F + +                  R  +        +  
Sbjct: 148 PVDDKEGLAYLRPETAQGIFTQFKNVMNSSRQKPPFGIAQIGKSFRNEITPGNFIFRTRE 207

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                   F+      E Q +  +  +++ +     D +++       ++ +     T D
Sbjct: 208 FEQMEMEFFVEPGTDEEWQEYWIEQRLNWYVN-LGIDRENLRLREHTEDELSHYAKRTVD 266

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMGSYGI 319
           V     F      +     GI     +   T    S    + +     +     +     
Sbjct: 267 VEYAFHFTGSKWGELE---GIANRTDYDLKTHSEGSGEDLSYYDQQKEERWIPYVIEPAA 323

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++  + +                  ++P K++++ +    +      E
Sbjct: 324 GLGRSLMAFLVDAYTEEEVPNAKGGTDTRTVLKLDPRLSPVKVAVLPLSKK-ETLTPTAE 382

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           KI  +L  +  ++ +D  G  IG ++   D +G P  V V    + D+ V ++ R T  +
Sbjct: 383 KIADKLRGLW-NIDYDTSGA-IGRRYRRQDEIGTPYCVTVDFDTLEDNAVTVRERDTMEQ 440

Query: 427 EDMSLEEVINYASHRFS 443
           E +S++E+  Y + R +
Sbjct: 441 ERVSIDELEGYLAQRLA 457


>gi|304390915|ref|ZP_07372867.1| glycyl-tRNA synthetase beta subunit [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315656296|ref|ZP_07909187.1| glycyl-tRNA synthetase beta subunit [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|304325798|gb|EFL93044.1| glycyl-tRNA synthetase beta subunit [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315493298|gb|EFU82898.1| glycyl-tRNA synthetase beta subunit [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 461

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/436 (13%), Positives = 127/436 (29%), Gaps = 42/436 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+         R+    + +    +    +W  SG   ++     E L
Sbjct: 32  WDYGPLGVELKENIKKAWWNYMVRSREDVVGLDSSVILPPKVWDASGHLKAFTDPLIECL 91

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R  +  +     E+   +            P    + +     E R   G++++  
Sbjct: 92  SCHKRLREDDLQEEYAEKHGVENPDDVSMDDVPCPNCGVKGKWT---EPRAFSGLLKTYL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDL 206
             + D          +       F + +    +         G            I    
Sbjct: 149 GPVDDESGLHFLRPETAQGIFINFANVMTTARKRPPFGIGQIGKSFRNEITPGNFIFRTR 208

Query: 207 SHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             E     F V   T E       D             +++       E+ +     T D
Sbjct: 209 EFEQMELEFFVEPGTDEEWHQYWIDHRFEWYTDLGIKPENLRLYEHPKEKLSHYSKRTVD 268

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-SLPMSATFKGADGK-DHYVQMGSYGI 319
           +     F++    +     GI     +  G    +      +            +     
Sbjct: 269 IEYAFGFENSKWGELE---GIANRTDYDLGVHMKASGQKLDYYDQANDKRWVPYVIEPSA 325

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++                       ++P K++++ +   D+   +   
Sbjct: 326 GLTRSLMAFLIEAYTEDEAPNTKGGVDKRTVLRLDPRLSPVKVAVLPLSRKDE-LPEIAH 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            I A L K   +V +DD G  +G ++   D +G P  V V    + D  V ++ R T  +
Sbjct: 385 NIAAELRKHW-NVEYDDAGA-VGRRYRRQDEIGTPYCVTVDFDSLEDQAVTVRERDTMTQ 442

Query: 427 EDMSLEEVINYASHRF 442
           E +  + ++ Y   R 
Sbjct: 443 ERIGRDNLLAYLRDRL 458


>gi|325261980|ref|ZP_08128718.1| glycine--tRNA ligase [Clostridium sp. D5]
 gi|324033434|gb|EGB94711.1| glycine--tRNA ligase [Clostridium sp. D5]
          Length = 463

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/443 (14%), Positives = 141/443 (31%), Gaps = 52/443 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   W+ SG    +   +
Sbjct: 33  WDYGNLGVELKNNVKRAWWQKFI----QESPYNVGVDCAILMNPQTWIASGHLGGFSDPL 88

Query: 94  LRLADRNDK--AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +   + +++  A                  + ++     T +  + +       +     
Sbjct: 89  MDCRECHERFRADKIIEDFCAEHDIAIEGAVDAWSQEQMTAFIEEHQIPCPSCGKHNFTD 148

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP- 201
            R+F +       +T +     Y +          F +  R   +     I    +S   
Sbjct: 149 IRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRN 208

Query: 202 ------------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                           +  EF     T        K F    + S     D++   +   
Sbjct: 209 EITPGNFTFRTREFEQMELEFFCEPGTDLDWFAYWKQFCLDWLSSLGLKDDEVRYRDHDQ 268

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E+ +  Y+  +            E   ++ R            + S    + F     + 
Sbjct: 269 EELS-FYSKATTDVEFLFPFGWGELWGIADRTDYDLTQHQ---EVSKQDMSYFDDEKKEK 324

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQV 360
           +   +    +GA R+V A + S++D +          + +  ++AP KI ++ +      
Sbjct: 325 YIPYVIEPSLGADRMVLAFLCSAYDEEELEGGDMRTVMHFHPALAPVKIGVLPLSKK--- 381

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  EK++A LSK   +  +DD G  IG ++   D +G P  V        D  V ++ 
Sbjct: 382 LNEGAEKVFAELSKH-YNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRD 439

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R +  +E + +E++  Y   +  
Sbjct: 440 RDSMEQERIKIEDLKAYFEEKLR 462


>gi|218282283|ref|ZP_03488582.1| hypothetical protein EUBIFOR_01164 [Eubacterium biforme DSM 3989]
 gi|218216751|gb|EEC90289.1| hypothetical protein EUBIFOR_01164 [Eubacterium biforme DSM 3989]
          Length = 476

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/438 (14%), Positives = 149/438 (34%), Gaps = 46/438 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +   +     +      L + ++WV SG    +   ++   
Sbjct: 50  WDFGPLGIELKNNIKNAWWKRFIQESEHNVGLQSAILMNPNVWVASGHVGGFSDPLMDCK 109

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-------ELRPRFGVM 150
           +            EE           S  ++     + ++            +R    + 
Sbjct: 110 EC-KSRFRADQLIEEASNHTVNCGGMSNEDMENYIAEHEITCPKCGAKNFTNIRQFNLMF 168

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPI 202
           ++ + +++DA S       +       F +  R   +         G            I
Sbjct: 169 KTFQGVLEDAKSTIYLRPETAQGIFVNFKNVQRTMRKKLPFGIGQIGKSFRNEITPGNFI 228

Query: 203 GGDLSHEFIV-------LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                 E +          D    + +C           +    ++ I L +   +  A 
Sbjct: 229 FRTREFEQMELEFFCKPGTDLDWFEYYCKNCVQFLK---DLGINEENIRLRAHDPEELAH 285

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQ 313
           Y+  +        + +   +     GI     F        S      F     + +   
Sbjct: 286 YSNGTSDIEYHFSEPIGWGELW---GIADRTDFDLKAHQTTSKQNLEYFDQEANEKYIPY 342

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDAC 365
           +    +G  R++ AV+  ++  + +            ++AP+K++++ +        D  
Sbjct: 343 VIEPSVGVERLMLAVMCEAYQEEQLENDSRVVLKLHPALAPYKVAVLPLSKK---LSDQG 399

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           ++++A+LSK    V +DD  + IG ++   D +G P  V V  +  +D  V I+ R T  
Sbjct: 400 DEVFAKLSKH-FSVTYDD-AQSIGKRYRRQDAIGTPFCVTVDFETANDGCVTIRDRDTMQ 457

Query: 426 REDMSLEEVINYASHRFS 443
           +E ++L+++++Y  +R +
Sbjct: 458 QERVALDDLVSYIENRIA 475


>gi|291299567|ref|YP_003510845.1| glycyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
 gi|290568787|gb|ADD41752.1| glycyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
          Length = 461

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/433 (13%), Positives = 126/433 (29%), Gaps = 37/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +     R   + +    + +  +W  +G    +   +    
Sbjct: 33  WDYGPLGVELKENIRRQWWKAMVQQRDDVVGIDSAVVLNRQVWEATGHVREFTDLLTECQ 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +        E        +                     E R    +M++    +
Sbjct: 93  SCHKR-FRADHLLEAYAAKHDGAEPADGVRSLVCANCGTRGAFTEPRMFNTMMKTFLGPI 151

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG----- 204
           +   +       +       F + +    +         G            I       
Sbjct: 152 ESEDNAHFLRPETAQGIFVNFANVMTSARKKPPFGIAQVGKSFRNEITPGNFIFRTREFE 211

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +  EF V   + E       +             ++I       ++       T D+  
Sbjct: 212 QMEMEFFVEPGSDEEWHEFWLNERWNWYTDLGISEENIRRYEHPKDKLAHYAKRTVDIEY 271

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYS-LPMSATFKGA-DGKDHYVQMGSYGIGAM 322
              F      +     GI     F      +   +  ++     G+     +     G  
Sbjct: 272 RFGF---GGKEFDELEGIANRTDFDLSCHTTASGVDLSYFDQAKGERWTPYVIEPAAGLT 328

Query: 323 RVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           R V A +  ++D                  +   +AP K++++ + + ++        + 
Sbjct: 329 RSVLAFLMEAYDVDEAPNTKGGIDKRTVLRFDPRLAPVKVAVLPL-SRNEKLSPKARDLA 387

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L K    V +DD G  IG ++  AD +G PL V V    + D  V ++ R T  +E +
Sbjct: 388 KDLRKRWV-VDFDDAGA-IGRRYRRADEIGTPLCVTVDFDTLDDDAVTVRDRDTMKQERV 445

Query: 430 SLEEVINYASHRF 442
           +L +V +Y   R 
Sbjct: 446 ALSQVESYLIERL 458


>gi|301055912|ref|YP_003794123.1| histidyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300378081|gb|ADK06985.1| histidyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 476

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAYRDALIA-HFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ +K+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLTVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|326334002|ref|ZP_08200231.1| glycine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
 gi|325948151|gb|EGD40262.1| glycine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
          Length = 466

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/435 (15%), Positives = 130/435 (29%), Gaps = 39/435 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+     +     R   + +    +     WV SG  +++     E  
Sbjct: 36  WDYGPLGVELKENIKRQWWKAMVQQRDDVVGLDSSIILPRQTWVASGHVETFNDPLVECQ 95

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R     +     E+       S   +   +             E R   G++++  
Sbjct: 96  SCHKRYRFDHLQEEYAEKKGIADPDSVDIN--EVVACPNCGTRGAWTEPREFSGMLKTHL 153

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG-- 204
            +++D          +       F + +    +         G            I    
Sbjct: 154 GVLEDESGLHYLRPETAQGIFVNFANVVTSTRQKPPFGIAQTGKSFRNEITPGNFIFRTR 213

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V     E       D           + D++       E+ +     T D
Sbjct: 214 EFEQMEMEFFVKPGEDEEWHQYWIDERTRWYTDLGINPDNLRHYEHAQEKLSHYSKRTVD 273

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     F      +     GI     F  GT  K+S      F  A+ + +   +     
Sbjct: 274 IEYRFNFPGSEWGELE---GIANRTDFDLGTHMKHSGQDLQYFDQANNERYLPYVIEPAA 330

Query: 320 GAMRVVAAVIESSH------------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           G  R +   +   +            D + ++  D         +   + ++      + 
Sbjct: 331 GLTRALMTFLVDGYAEEEAPNAKGGVDKRVVLRLDHRIAPVKIAVLPLSRNEALSPKAKA 390

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A L +    V +DD  + IG ++   D +G P  V V    + D+ V I+ R T  +E
Sbjct: 391 LSAELRQNWA-VDFDDS-QSIGKRYRRQDEIGTPYCVTVDFDTLEDNAVTIRERDTMKQE 448

Query: 428 DMSLEEVINYASHRF 442
            + LE V  Y + R 
Sbjct: 449 RIPLEGVSRYFAERL 463


>gi|256825028|ref|YP_003148988.1| glycyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
 gi|256688421|gb|ACV06223.1| glycyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
          Length = 468

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/442 (14%), Positives = 132/442 (29%), Gaps = 50/442 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    +N+           R   + +    +    +W  SG   ++     E  
Sbjct: 35  WDYGPLGVALKENIKRQWWRTMVQMRDDVVGLDSAVILPTAVWEASGHVATFTDPLTECQ 94

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSR 153
               R     +     E+                         K    E +   G++++ 
Sbjct: 95  SCHKRFRADHLQEAVAEKKAAKGQEVDPDDVSFEDIACANCGTKGAWTEPKQFSGLLKTY 154

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAES 199
             + +D          +       F + +                  R  +        +
Sbjct: 155 LGVTEDESGKHYLRPETAQGIFTQFANVMTTSRKKPPFGIAQVGKSFRNEITPGNFIFRT 214

Query: 200 GPIGGDLSHEFIVLADT----GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                     F+  A+      E    C K F+D  I  EN    +        ++ +  
Sbjct: 215 REFEQMELEYFVAPAEAPKYFDEWLEVCEKWFLDLGITPENIRRYE-----HPEDKLSHY 269

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQ 313
              T D+     F      + +   G+     F        S    + F  A G+ +   
Sbjct: 270 SDRTIDLEYRFGFSGSEFGELM---GVANRTDFDLSVHAEASGQDLSYFNQATGERYVPY 326

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQV 360
           +     G  R + A +  ++                       +AP K++++ + + ++ 
Sbjct: 327 VIEPAFGLTRALMAFLIDAYTEDEAPNAKGGMDKRVVLKLDPRLAPVKVAVLPL-SRNEE 385

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++ A+L +   DV +DD    IG ++   D +G P  + V    + D  V I+ 
Sbjct: 386 LSPKARELAAQLRQYW-DVDFDDSQA-IGKRYRRQDEIGTPFCITVDFDTLEDDAVTIRE 443

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R T  +E + L++V  Y + R 
Sbjct: 444 RDTMSQERVPLDQVQGYLAQRL 465


>gi|298345360|ref|YP_003718047.1| glycine--tRNA ligase [Mobiluncus curtisii ATCC 43063]
 gi|315655778|ref|ZP_07908676.1| glycyl-tRNA synthetase beta subunit [Mobiluncus curtisii ATCC
           51333]
 gi|298235421|gb|ADI66553.1| glycine--tRNA ligase [Mobiluncus curtisii ATCC 43063]
 gi|315489842|gb|EFU79469.1| glycyl-tRNA synthetase beta subunit [Mobiluncus curtisii ATCC
           51333]
          Length = 457

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/436 (13%), Positives = 127/436 (29%), Gaps = 42/436 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+         R+    + +    +    +W  SG   ++     E L
Sbjct: 28  WDYGPLGVELKENIKKAWWNYMVRSREDVVGLDSSVILPPKVWDASGHLKAFTDPLIECL 87

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R  +  +     E+   +            P    + +     E R   G++++  
Sbjct: 88  SCHKRLREDDLQEEYAEKHGVENPDDVSMDDVPCPNCGVKGKWT---EPRAFSGLLKTYL 144

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDL 206
             + D          +       F + +    +         G            I    
Sbjct: 145 GPVDDESGLHFLRPETAQGIFINFANVMTTARKRPPFGIGQIGKSFRNEITPGNFIFRTR 204

Query: 207 SHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             E     F V   T E       D             +++       E+ +     T D
Sbjct: 205 EFEQMELEFFVEPGTDEEWHQYWIDHRFEWYTDLGIKPENLRLYEHPKEKLSHYSKRTVD 264

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-SLPMSATFKGADGK-DHYVQMGSYGI 319
           +     F++    +     GI     +  G    +      +            +     
Sbjct: 265 IEYAFGFENSKWGELE---GIANRTDYDLGVHMKASGQKLDYYDQANDKRWVPYVIEPSA 321

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++                       ++P K++++ +   D+   +   
Sbjct: 322 GLTRSLMAFLIEAYTEDEAPNTKGGVDKRTVLRLDPRLSPVKVAVLPLSRKDE-LPEIAH 380

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            I A L K   +V +DD G  +G ++   D +G P  V V    + D  V ++ R T  +
Sbjct: 381 NIAAELRKHW-NVEYDDAGA-VGRRYRRQDEIGTPYCVTVDFDSLEDQAVTVRERDTMTQ 438

Query: 427 EDMSLEEVINYASHRF 442
           E +  + ++ Y   R 
Sbjct: 439 ERIGRDNLLAYLRDRL 454


>gi|254520543|ref|ZP_05132599.1| glycyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226914292|gb|EEH99493.1| glycyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 463

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/443 (12%), Positives = 138/443 (31%), Gaps = 53/443 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + + PLG +  +NV     ++       E      +    L + ++WV SG    +   +
Sbjct: 34  WDYGPLGVEFKNNVKKAWWKKF----VQESPYNVGVDCAILMNPEVWVASGHVGGFSDPL 89

Query: 94  LRLA--------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ--IQLKFRDEL 143
           +           D+  +  +     E    D + +                       ++
Sbjct: 90  MDCKECKARFRADKIVEDHMTENGAEVASADGWSNEQLKEYIEKNNIVCPKCGKLNYTDI 149

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLG 189
           R    + ++ + + +D+ S       +       F S  R                 R  
Sbjct: 150 RKFNLMFKTFQGITEDSASTIYLRPETAQGIFVNFKSVQRTSRKKVPFGIAQVGKSFRNE 209

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           +        +          F       E   +      +F +        D + +    
Sbjct: 210 ITPGNFTFRTREFEQMELEFFCKPGTDLEWFKYWKDYCWNFLLN--LGVQQDNLRMRDHG 267

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E+  + Y+  +            E   ++ R            ++S    +    +  + 
Sbjct: 268 EEELSFYSNATSDIEYLFPFGWGELWGIADRTDYDLKKHQ---EHSGQDMSYLDPSTNEK 324

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQV 360
           +   +    +GA RV  A +  ++D +          +    ++AP+K +++ +      
Sbjct: 325 YVPYVIEPSLGADRVALAFLVDAYDEEELEGGDVRTVMHLHPALAPYKAAILPLSKK--- 381

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +    +Y+ LSK   ++ +D+ G  IG ++   D +G P  + +    + D  V I++
Sbjct: 382 LSEKALDVYSDLSKK-FNIEYDEAG-SIGKRYRRQDEIGTPFCITIDFDTLEDEAVTIRN 439

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +E + + ++  Y      
Sbjct: 440 RDTMEQERIKISDLEAYIEKSLE 462


>gi|257055413|ref|YP_003133245.1| glycyl-tRNA synthetase [Saccharomonospora viridis DSM 43017]
 gi|256585285|gb|ACU96418.1| glycyl-tRNA synthetase [Saccharomonospora viridis DSM 43017]
          Length = 463

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/434 (14%), Positives = 139/434 (32%), Gaps = 37/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  DN+     +   QNR   + +    +    +WV SG   ++     E L
Sbjct: 33  WDYGPLGVELKDNIKRQWWKAVVQNREDVVGIDSSVILPRQVWVASGHVGAFHDPLVECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R     +     E    ++   +  S    P    + +     E      ++++  
Sbjct: 93  SCHRRYRSDQLAEEYAERTGAEVVDENDLSQVPCPNCGTRGKYTEPREFNM---MLKTFL 149

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDL 206
             ++           +       F++      +         G            I    
Sbjct: 150 GPVESEEGLHYLRPETAQGIFVNFLNVQTTTRKKPPFGIGQIGKSFRNEITPGNFIFRTR 209

Query: 207 SHEFIVL---ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             E + +    + GE + +      +      +         +    +    + +   V 
Sbjct: 210 EFEQMEMEFFVEPGEDEKWHQYWIDERTEWYVDLGIRRENLRHYEHPKEKLSHYSKRTVD 269

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGIGA 321
            E  F      +     GI     F   T   +S    + F  A G+ +   +     G 
Sbjct: 270 IEYRFRFSSGQEWGELEGIANRTDFDLTTHSNHSGVDLSYFDQASGQRYRPFVIEPAAGV 329

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++    +                  +AP+K++++ + + +         I
Sbjct: 330 GRAMMAFLLDAYTEDEVPNAKGGMDKRVVLKLDPRLAPYKVAVLPL-SRNADLTPKARDI 388

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A+L K   +  +DD  + IG ++   + +G P  V V    + D  V ++ R T  +E 
Sbjct: 389 AAQLRKHW-NTDFDD-AQSIGKRYRRQEEIGTPYCVTVDFDTLEDHAVTVRDRDTMAQER 446

Query: 429 MSLEEVINYASHRF 442
           +S++++ +Y + R 
Sbjct: 447 VSIDQLESYLAARL 460


>gi|54400362|ref|NP_001005932.1| threonyl-tRNA synthetase, cytoplasmic isoform 2 [Danio rerio]
 gi|53734186|gb|AAH83525.1| Zgc:92586 [Danio rerio]
          Length = 624

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 114/344 (33%), Gaps = 36/344 (10%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYS 162
               P +      +F    +S+R LP       +  R+EL     G+ R R F   DA+ 
Sbjct: 307 FALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI 366

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           F    +               ++   G                    F +   T   +  
Sbjct: 367 FCSMDQIESE-IKGCLDFLRTVYDVFGFT------------------FKLNLSTRPEKFL 407

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
              +  D          +D      +     A Y    D+   ++ D++    + +   +
Sbjct: 408 GEPEVWDQAEKQLENSLNDFGEKWVLNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQL 464

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           +    F    +++L   +     D K   V +    +G++  + A++    +  G  WP 
Sbjct: 465 D----FQLPIRFNLTFVSH--DGDDKKRPVIIHRAILGSVERMIAILT---ENYGGKWPL 515

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFP 401
            ++P ++ ++ I      C +  +++     KVG     D D G  +  +   A L  + 
Sbjct: 516 WLSPRQVMVVPIGP---TCDEYAQRVQKEFHKVGLMTDVDLDPGCTLNKKIRNAQLAQYN 572

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             ++VG K  S   V ++ R   +  + SL + +       ++ 
Sbjct: 573 FILVVGEKEKSSDTVNVRTRDNKVHGERSLTDCMERLKQLKASR 616


>gi|168187059|ref|ZP_02621694.1| glycyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
 gi|169295056|gb|EDS77189.1| glycyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
          Length = 463

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/455 (13%), Positives = 139/455 (30%), Gaps = 51/455 (11%)

Query: 30  GMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWV 81
           G I Q S    G+   + + PLG +  +NV     +   +     +      L + ++WV
Sbjct: 18  GFIFQGSEIYGGLANSWDYGPLGVEFKNNVKKAWWKRFIQESPYNIGLDSSILMNKEVWV 77

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFR 140
            SG    +   ++   +   +        E +  +         + N     Y  +    
Sbjct: 78  ASGHVGGFSDPLMDCKECKARFRADKLVEEHLAANGKDDVSADGWTNEELMNYIDENNIV 137

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK-----------------MFVSYLR 183
                +      R F +       +T + +   Y +                        
Sbjct: 138 CPKCGKKNYTDIRRFNLMFKTFQGVTEDSNAEIYLRPETAQGIFVNFKNAQRSSRKKVPF 197

Query: 184 IFHRLGLKSIPMR------AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              ++G               +          F       E   +       F +  +  
Sbjct: 198 GIGQIGKSFRNEITPGNFTFRTREFEQMELEFFCKPGTDLEWFHYWKNYCWKFLL--DLG 255

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             ++ +      E+  + Y+  +            E   V+ R            ++S  
Sbjct: 256 MTEESLRFRDHGEEELSFYSNATSDIEFLFPFGWGELWGVADRTDYDLKKH---MEHSGQ 312

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFK 348
                     + +   +    +GA RV  A +  ++D + +          +   +APFK
Sbjct: 313 ELTYLDPTTNEKYVPYVIEPSLGADRVALAFLVDAYDEEELENGDTRTVLHFHPVLAPFK 372

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            +++ +        +    +YA+LSK   ++ +D+ G  IG ++   D +G P  + V  
Sbjct: 373 AAILPLSKK---LSEKALDVYAKLSKK-FNIDYDEAG-SIGKRYRREDEIGTPYCITVDF 427

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             + D+ V ++ R    +  +S++E+  +   +  
Sbjct: 428 DTLEDNTVTVRDRDNMTQIRLSIDELEKFLEEKVQ 462


>gi|261883755|ref|ZP_06007794.1| threonyl-tRNA synthetase [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 225

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 76/230 (33%), Gaps = 18/230 (7%)

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           T   +        +    +     D+      I E   A Y    D+   K+ D+L    
Sbjct: 10  TKPAKAVGDDAVWEIATKALKDALDEKGLKYGIDEGGGAFYGPKIDI---KITDALKRKW 66

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHD 334
           +     ++    F    ++       +   + +      +    +G+      ++     
Sbjct: 67  QCGTIQVD----FNLPARFD----LGYIDENNERKQPVMLHRAIMGSFERFIGILLEHTA 118

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
           G+   W         + + I            ++++ L  +  D    +  E +  +   
Sbjct: 119 GELPFW------IAPTQVVIIPISNEHHKYANEVHSLLLDMDVDSEIFNKNETLNKKIRT 172

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           A+    P+ +++G   V++  V ++ R    ++DMSL+E + +   + + 
Sbjct: 173 AEKQRVPMIIVLGDNEVTNRGVALRDRRAREQKDMSLDEFLGFIQSKLNE 222


>gi|289450135|ref|YP_003475729.1| glycine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184682|gb|ADC91107.1| glycine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 462

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/436 (15%), Positives = 143/436 (32%), Gaps = 42/436 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  R     +      L +  +WV SG    +   ++   
Sbjct: 34  WDYGPLGVELKNNVKNAWWQKFVRESPYNVGVDCAILMNPQVWVTSGHVGGFSDPLIDCK 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        +    +     +  + N   T Y  +         +      R+F +
Sbjct: 94  SCKSRHRADQLIEQWAHANGQDVDVNGWTNEQLTNYINEKAIPCPACGKTDYTEIRKFNL 153

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP------- 201
                  +T +     Y +          F +  R   +     I    +S         
Sbjct: 154 MFKTFQGVTEDNKSELYLRPETAQGIFVNFRNVQRTSRKKLPFGICQVGKSFRNEITPGN 213

Query: 202 ------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                     +  EF    DT        KDF    + +      ++   +   E+ +  
Sbjct: 214 FTFRTREFEQMELEFFCNPDTDLDWFHYWKDFCYNWLKTLGIAETELRLRDHRPEELS-F 272

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y+  +            E   ++ R            + S      F     + +   + 
Sbjct: 273 YSKATTDIEFLFPFGWGELWGIADRTNYDLGRH---MEASRQDLTYFDPETNEKYIPYVV 329

Query: 316 SYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACE 366
              +GA RV  A + +++D + +          +  ++AP KI+++ + A      +A  
Sbjct: 330 EPSLGADRVALAFLCAAYDEETLAGGDIRTVLRFHPALAPVKIAVLPLSAK---LTEAAR 386

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +Y  LSK+G +   DD  + IG ++   D +G P  V      V+D+ V ++ R +  +
Sbjct: 387 PLYEMLSKIG-NCELDDR-QGIGKRYRRQDEIGTPYCVTYDFDSVNDNCVTVRERDSMEQ 444

Query: 427 EDMSLEEVINYASHRF 442
             + + E+  Y + +F
Sbjct: 445 VRLPIAELTAYFADKF 460


>gi|258512005|ref|YP_003185439.1| histidyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478731|gb|ACV59050.1| histidyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 420

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 61/409 (14%), Positives = 127/409 (31%), Gaps = 16/409 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +A   + A++R+   R    E+  P  +  +L+        D   KEM    DR 
Sbjct: 13  LPGAVEAWQALEAVVRDVFERANYEEIRTPIFEHTELFERGVGETTDIVSKEMYTFLDRG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            +++   P     +   +  +    +      Y +   FR E   R  + +  +  ++  
Sbjct: 73  GRSVTLRPEGTAGVVRAYVENKLYGQGSLTKVYYLGPMFRYEKPQRGRLRQLHQVGVEVL 132

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
            S    P          +    ++  R     +     S  +      E ++       +
Sbjct: 133 GSE--LPAIDAEVIELGYSLLKKVGMRDMTVELNSVGCS--VCRPRHREKMIQRLLPHKE 188

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA- 279
             C+   +               S   ++ +   PY       + +      E    +  
Sbjct: 189 ELCADCQVRLEKNPLRLFDCKNESCQQVLREANVPYIVDELCDDCRKHLDAVEGYLRAMD 248

Query: 280 ------RGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 + +  G  +Y  T +  ++P  +T  G  G+ + +     G     +  A    
Sbjct: 249 VPYRLEKSLVRGLDYYTRTAWEITVPNFSTVLG-GGRYNRLVAELGGPDVPGIGFAAGMD 307

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                      S+   +     I   D+        +   L ++G     D  G  + SQ
Sbjct: 308 RVLAVLEAQGVSLGERQPLDAFICVADETAEHTAMAVLTSLRRLGVRCDRDYQGRSLKSQ 367

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           F  AD LG    V++G   ++     +KH  TG + D+   ++ +    
Sbjct: 368 FKQADRLGAKFAVVIGESELAKGAATVKHLATGEQRDVPFGQLADRIRE 416


>gi|65317824|ref|ZP_00390783.1| COG0442: Prolyl-tRNA synthetase [Bacillus anthracis str. A2012]
          Length = 383

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 78/172 (45%), Gaps = 2/172 (1%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E+     + ++ G    FGT +S      F   +GK  YV   S+G+ + R++  +I   
Sbjct: 92  ESLMHDGKALQTGTSHNFGTNFSEAFDIKFLDRNGKWQYVHQTSWGV-STRMIGGLIMVH 150

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            D  G++ P  VAP ++ ++ I  H +       ++   + KV   V  D   +  G +F
Sbjct: 151 SDNNGLVMPPKVAPVQVVIVPIAQHKEGVLAKATELQGHIQKV-ARVKIDASNKTPGWKF 209

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              ++ G P+++ VG K +  ++V +  R T  +E +S++++          
Sbjct: 210 NEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFISMDQLEERIPALLEE 261


>gi|218291280|ref|ZP_03495256.1| histidyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
 gi|218238828|gb|EED06040.1| histidyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
          Length = 420

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 65/411 (15%), Positives = 128/411 (31%), Gaps = 20/411 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +A   + A++R+   R    E+  P  +  +L+        D   KEM    DR 
Sbjct: 13  LPGAVEAWQALEAVVRDVFERANYEEIRTPIFEHTELFERGVGETTDIVSKEMYTFLDRG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            +++   P     +   +  +    +      Y +   FR E   R    R R+      
Sbjct: 73  GRSVTLRPEGTAGVVRAYVENKLYGQGSLTKVYYLGPMFRYEKPQRG---RLRQLHQVGV 129

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGE 218
                          ++  S L    RLG++ + +   S    +      E ++      
Sbjct: 130 EVLGSELPAIDAEVIELGYSIL---KRLGMRDMTVELNSVGCSVCRPRHREKMIERLLPY 186

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            +  C    +               S   ++ +   PY       + +      E    +
Sbjct: 187 REELCGDCQVRLEKNPLRLFDCKNESCQQVLREANVPYIVDELCDDCRKHLDAVEGYLRA 246

Query: 279 A-------RGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                   + +  G  +Y  T +  ++P  +T  G  G+ + +     G     +  A  
Sbjct: 247 MDVPYRLEKSLVRGLDYYTRTAWEITVPNFSTVLG-GGRYNRLVAELGGPDVPGIGFAAG 305

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                        S+   +     I   D+        +   L ++G     D  G  + 
Sbjct: 306 MDRVIAVLEAQGVSLGERQPLDAFICVADETAEHTAMAVLTSLRRLGVRCDRDYQGRSLK 365

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           SQF  AD LG    V++G   ++     +KH  TG + D+   ++ +    
Sbjct: 366 SQFKQADRLGAKFAVVIGESELAKGAATVKHLATGEQRDVPFGQLADRIRE 416


>gi|119716172|ref|YP_923137.1| glycyl-tRNA synthetase [Nocardioides sp. JS614]
 gi|119536833|gb|ABL81450.1| glycyl-tRNA synthetase [Nocardioides sp. JS614]
          Length = 471

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/440 (13%), Positives = 136/440 (30%), Gaps = 44/440 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +     R   + +    +    +W  SG  D++   +    
Sbjct: 36  WDYGPLGVELKENIKRQWWKSMVTMRDDMVGLDSSIILPRQVWEASGHVDTFMDPLTECQ 95

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN------LPFTFYQIQLKFRDELRPRFGVMR 151
             + +        EEV     +S   S                       E R   G+++
Sbjct: 96  SCHKR-FRADHLQEEVAEKKSKSEGHSVNPDDVDLATVACPNCGTRGAWTEPRQFSGLLK 154

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRA 197
           +   ++++          +       F + +                  R  +       
Sbjct: 155 THLGVIENEEGLHYLRPETAQGIFINFANVVTSSRHKPPFGIAQIGKSFRNEITPGNFIF 214

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            +          F+   +  E   +   +   + +     D D++       E+ +    
Sbjct: 215 RTREFEQMEMEFFVKPGEDKEWHQYWIDERTRWYV-DLGIDPDNLRHFEHPQEKLSHYST 273

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMG 315
            T D+     F      +     GI     F   T  K+S    + F  A+ + +   + 
Sbjct: 274 RTVDIEYRFRFAGSEWGELE---GIANRTDFDLSTHSKHSGQDLSYFDQANNERYVPYVI 330

Query: 316 SYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCR 362
               G  R +   +  ++                       +AP K++++ + + +    
Sbjct: 331 EPAAGLSRSLMTFLVDAYQEDEAPNTKGGVDKRTVLRLDPRLAPVKVAVLPL-SRNADLS 389

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              + +   L + G  V +DD G  IG ++   D +G P  V V  + + D  V ++ R 
Sbjct: 390 PKAKDLAMELRRAGWHVDFDDSGA-IGRRYRRQDEIGTPYCVTVDFETLDDQAVTVRERD 448

Query: 423 TGIREDMSLEEVINYASHRF 442
           +  +E + L+ +  Y + R 
Sbjct: 449 SMQQERIGLDRISAYFAERL 468


>gi|295109870|emb|CBL23823.1| glycyl-tRNA synthetase, dimeric type [Ruminococcus obeum A2-162]
          Length = 464

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 61/441 (13%), Positives = 137/441 (31%), Gaps = 48/441 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   W+ SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKRAWWQKFI----QESPYNVGVDCAILMNPQTWIASGHLGGFSDPL 87

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSH--IKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +   + +++        +            + ++       +  + +       +     
Sbjct: 88  MDCKECHERFRADKLIEDFCADHDIEIEGSVDAWSQEKMMDFIKEHEVACPSCGKHNFTD 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP- 201
            R+F +       +T +     Y +          F +  R   +     I    +S   
Sbjct: 148 IRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRN 207

Query: 202 ------------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                           +  EF    DT        K F    + S     D++   +   
Sbjct: 208 EITPGNFTFRTREFEQMELEFFCEPDTDLEWFAYWKKFCLDWLSSLGLKEDEVRYRDHDK 267

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E+ +  Y+  +            E   ++ R              S      F     + 
Sbjct: 268 EELS-FYSKATTDVEFLFPFGWGELWGIADRTDYDLTQHQ---NVSGQDLTYFDDEKKQK 323

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH--------DQVC 361
           +   +    +GA R+V A + S++D + +    +     +    + A          +  
Sbjct: 324 YIPYVIEPSLGADRMVLAFLCSAYDEEVLDAEKNDVRTVLHFHPVLAPVKIGVLPLSKKL 383

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  EKIY +LSK   +  +DD G  IG ++   D +G P  +    +  +D  V ++ R
Sbjct: 384 NEGAEKIYQQLSKK-YNCEYDDRG-NIGKRYRRQDEIGTPFCITYDFESENDGAVTVRDR 441

Query: 422 LTGIREDMSLEEVINYASHRF 442
            T  +  + ++E+  Y + +F
Sbjct: 442 DTMEQVRIKIDELDAYFADKF 462


>gi|13358015|ref|NP_078289.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762025|ref|YP_001752537.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920192|ref|ZP_02931576.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508558|ref|ZP_02958076.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701893|ref|ZP_02971547.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|81858603|sp|Q9PQ38|SYP_UREPA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|259511629|sp|B1AJ93|SYP_UREP2 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|11279770|pir||B82890 prolyl aminoacyl-tRNA synthetase UU452 [imported] - Ureaplasma
           urealyticum
 gi|6899444|gb|AAF30864.1|AE002141_10 prolyl aminoacyl-tRNA synthetase [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827602|gb|ACA32864.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902571|gb|EDT48860.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182676000|gb|EDT87905.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701201|gb|EDU19483.1| prolyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 472

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/411 (15%), Positives = 136/411 (33%), Gaps = 61/411 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRL 96
           G+  + P      + +   I  E  + G   +++PTL   ++   E    + +  E+  +
Sbjct: 36  GMMVFQPNAWAIWEAIKNQIDVEFKKHGVRNLAMPTLIPLSEFQKEKDHIEGFAPELFMV 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               DK +                                                    
Sbjct: 96  NQIGDKKLDNSYA----------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + +  +  SY  +  +       MRAE        + EF      
Sbjct: 109 -----IRPTSEILFCNYFKNIVNSYNDLPIKNNQWCSVMRAEKTTRPFLRNAEFHWQ--- 160

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
               +F S++  D         + D +     +                +   ++ E   
Sbjct: 161 ELHAIFASENEADSFAKVILDVYTDFVQNYLCIPVIKGLKTPWERFAGAQKTYTI-EAMM 219

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+G D + HYV   S G+ + R++ A+I    D +
Sbjct: 220 QDGQALQSATSHYLGQFFAKAYDIKFQGQDNQMHYVHQMSAGL-STRIIGALIMVHADDQ 278

Query: 337 GIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           G+I P  +A  +I+++ I    +       ++I  +L      +F D   + IG + A  
Sbjct: 279 GLILPPDIAFNQIAILTIFSNKNPQLLKISQQICEQL--NNYRLFEDHSDKGIGYKLAQQ 336

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++ G P+ ++VG+K + + +V I  R T  + ++ L ++        ++ +
Sbjct: 337 EIEGTPICILVGAKELVNQQVVIVRRDTHEKINVDLTDLKLIIPKLLADIK 387


>gi|308272040|emb|CBX28648.1| Prolyl-tRNA synthetase [uncultured Desulfobacterium sp.]
          Length = 506

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 137/438 (31%), Gaps = 88/438 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +N+   + +    TG      P       L  E+   + + KE   +
Sbjct: 38  GCMVIKPWGYSLWENIVRELDDMFKDTGVKNAYFPLFIPLGFLEKEAAHVEGFAKECAVV 97

Query: 97  ADRN---------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
                               + ++  PT E ++ D F + + SYR+LP    Q     R 
Sbjct: 98  THHRLEKNSEGRLVPAGPLTEPLVVRPTSETIIGDAFSNWVSSYRDLPLIINQWANVVRW 157

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E+R R   +R+ EFL ++ ++   + + +      M   Y ++                 
Sbjct: 158 EMRTRI-FLRTSEFLWQEGHTAHASEKEAMERTKLMLDIYAKLAEEY------------- 203

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                                         IP       +       VE +         
Sbjct: 204 ----------------------------LAIPVIKGRKTEAEKFPGAVETF--------- 226

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                      E      +G++ G   + G  ++      F+  + K+ Y    S+G+ +
Sbjct: 227 ---------SIEAMMHDRKGLQAGTSHFLGQNFAKASEIKFQSFEEKEEYAWTTSWGV-S 276

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK---AHDQVCRDACEKIYARLSK---- 374
            R++  +I +  D  G+I P  VA   + LI I           +  EK+   L      
Sbjct: 277 TRLIGGIIMTHGDDNGVILPPRVASSHVVLIPIYRSPDDKPKVMEYVEKLGLELKDLFYH 336

Query: 375 -VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT--GIREDMSL 431
                V  DD     G++       G PL+V +G + ++   V I  R      +  M  
Sbjct: 337 HRKIRVEIDDRDIG-GARGWDWIKKGIPLRVEIGPRDIAKDSVFIGRRDKSHREKISMKR 395

Query: 432 EEVINYASHRFSNNRPVL 449
           ++ +    +   + +  L
Sbjct: 396 DQFLKEIINILDDIQNNL 413


>gi|328724240|ref|XP_001946260.2| PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Acyrthosiphon
            pisum]
          Length = 1657

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/447 (13%), Positives = 121/447 (27%), Gaps = 97/447 (21%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNR--TGAIEMSVPTLQSA-DL 79
            +++++  MI  +   G Y   P   +  + +         R          P   S   L
Sbjct: 1138 QVLVKGEMIEYYDVSGCYVLRPWAYRIWELIQEWFDARIKRKPLNIRNCYFPMFVSQGAL 1197

Query: 80   WVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
              E      +  E+  +    +  +       PT E  M   F   I+SYR+LP    Q 
Sbjct: 1198 EREKEHIADFAPEVAWVTKSGETDLAEPIAIRPTSETGMYPAFAKWIQSYRDLPLKLNQW 1257

Query: 136  QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
                R E +     +R                                            
Sbjct: 1258 NSVVRWEFKHPQPFLR-------------------------------------------- 1273

Query: 196  RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
               +        H      +  E  V  +  + ++   +       I    +  E++   
Sbjct: 1274 ---TREFLWQEGHNAYATREEAERDVLITLGYYEYVYKNMLA-VPVIKGKKTEKEKFAGG 1329

Query: 256  YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
               T+                 S R I+     Y GT ++      F+  D  +      
Sbjct: 1330 IFTTT----------CEAYVASSGRAIQGATSHYLGTNFAKMFDVHFEHPDTHEKSFVHQ 1379

Query: 316  SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKI 368
                   R +  ++    D +G++ P  +A  ++ ++          +        C  +
Sbjct: 1380 ISFGMTTRTIGVMVMVHGDDRGLVLPPRIASIQVIIVPCGVGVSTANEVKDNLIRTCLDV 1439

Query: 369  YARLS---------------------KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIV 406
              RL                       +      D       G +F   +L G PL++ +
Sbjct: 1440 CNRLKGDSLIETDDENDNSVIQHRNSSLMIRADTDLRDNYSPGWKFNHWELKGVPLRLEI 1499

Query: 407  GSKFVS-DSKVEIKHRLTGIREDMSLE 432
            G K +  +  V ++ R  G +  + LE
Sbjct: 1500 GPKDLDRNQMVAVR-RDNGDKLTIPLE 1525


>gi|320535809|ref|ZP_08035890.1| glycyl-tRNA synthetase [Treponema phagedenis F0421]
 gi|320147357|gb|EFW38892.1| glycyl-tRNA synthetase [Treponema phagedenis F0421]
          Length = 452

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/443 (13%), Positives = 129/443 (29%), Gaps = 35/443 (7%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADL 79
           R G + Q S       G + + PLG +  +N++    +E  +     + +    L    +
Sbjct: 19  RRGFVFQSSEIYGGQNGAWDYGPLGIELKNNISRAWWKEMTQLHDNIVGLDAAILMHPRV 78

Query: 80  WVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           W  SG  +++     +  +   R     +      + +       +   R     F    
Sbjct: 79  WEASGHVENFTDPLVDCKKCKARFRADQMDQEKLAKKICPECGGELTDTRKFNLMFKTHI 138

Query: 137 LKFRDE--------LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
               D            +   +  +     +             ++    V+   IF   
Sbjct: 139 GATDDNSSLIYLRPETAQGIYVNYKNVAQSNRLKIPFGIAQIGKAFRNEIVTKNFIFRTC 198

Query: 189 GLKSIPMRAESGPIGGDLSHEFIV---LADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
             + + M+    P   D   E+      A   +  V   K       P E   +      
Sbjct: 199 EFEQMEMQFFVKPGTDDEWFEYWKKQRWAFYEKHGVRMHKLRWHQHGPDELAHYAKDAFD 258

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                ++   +     VHN   FD L  + + S + ++     Y     +      +   
Sbjct: 259 IEY--EFPMGFKELEGVHNRTDFD-LTRHTQYSGKDLQ-----YIDQDNNNERYIPYIIE 310

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI--IWPDSVAPFKISLINIKAHDQVCRD 363
                   +  +   A        + + D       +   +AP  ++++ +   D    +
Sbjct: 311 TSAGLTRNLLMFICDAYEEEKVADKGNADDWRTVLRFHPLIAPITVAVLPLMKKD-GLAE 369

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             E+I   L        +D  G  IG ++   D  G P  + V      D  V ++ R +
Sbjct: 370 LAEEIRNELRSE-FKTDFDLSGA-IGKRYRRQDEAGTPFCITVDYDSKKDGTVTLRFRDS 427

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
             +  +   E++N       N +
Sbjct: 428 MEQIRIPRSEIVNTIRQAIKNYK 450


>gi|228917037|ref|ZP_04080597.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228842644|gb|EEM87732.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 476

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRSMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ +K+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLAVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|153810740|ref|ZP_01963408.1| hypothetical protein RUMOBE_01124 [Ruminococcus obeum ATCC 29174]
 gi|149833136|gb|EDM88218.1| hypothetical protein RUMOBE_01124 [Ruminococcus obeum ATCC 29174]
          Length = 464

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 63/441 (14%), Positives = 137/441 (31%), Gaps = 48/441 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKRAWWQKF----VQESPYNVGVDCAILMNPQTWVASGHLGGFSDPL 87

Query: 94  LRLADRNDK--AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +   + +++  A                  + ++       +  + +       +     
Sbjct: 88  MDCKECHERFRADKLIEDFCAEHDIAIEGSVDAWSQEQMMNFIKEHEVPCPSCGKHNFTD 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP- 201
            R+F +       +T +     Y +          F +  R   +     I    +S   
Sbjct: 148 IRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRN 207

Query: 202 ------------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                           +  EF    DT        K F    + S     D++   +   
Sbjct: 208 EITPGNFTFRTREFEQMELEFFCEPDTDLEWFAYWKKFCLDWLSSLGLKDDEVRYRDHDK 267

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E+ +  Y+  +            E   ++ R              S      F     + 
Sbjct: 268 EELS-FYSKATTDVEFLFPFGWGELWGIADRTDYDLTQHQ---NVSGQDLTYFDDEKKQK 323

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH--------DQVC 361
           +   +    +GA R+V A + S++D + +    +     +    + A          +  
Sbjct: 324 YIPYVIEPSLGADRMVLAFLCSAYDEEVLDAEKNDVRTVLHFHPVLAPVKIGVLPLSKKL 383

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  EKI+ +LSK   +  +DD G  IG ++   D +G P  +    +  +D  V ++ R
Sbjct: 384 NEGAEKIFQKLSKK-YNCEFDDRG-NIGKRYRRQDEIGTPFCITYDFESENDGAVTVRDR 441

Query: 422 LTGIREDMSLEEVINYASHRF 442
            T  +  + +EE+  Y + +F
Sbjct: 442 DTMEQVRVKIEELEAYFADKF 462


>gi|326389845|ref|ZP_08211409.1| glycyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325994113|gb|EGD52541.1| glycyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 462

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/444 (13%), Positives = 138/444 (31%), Gaps = 56/444 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+  +  +   +     +      L + ++WV SG   S+   ++   
Sbjct: 34  WDYGPLGVELKNNIKRMWWKRFIQQSPYNVGIDTAILMNPEVWVASGHVSSFSDPLMDCK 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +   +        + +        I+ + N     +  + K        +     R+F +
Sbjct: 94  ECKSRFRADQLIEDYIKEKELNISIEGWTNEQLMEFIKEHKVPCPKCGAYNFTDIRKFNL 153

Query: 158 KDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRAESG 200
                  +T +     Y                             ++G           
Sbjct: 154 MFKTYQGVTEDSKSEVYLRPETAQGIFVNFKNVQRTTRKKIPFGIGQIGKSFRNEITPGN 213

Query: 201 PIGGDLSHEFIV---LADTGE-------TQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            I      E +        GE        + +C    ++F +  EN  F D        +
Sbjct: 214 FIFRTREFEQMELEFFCKPGEDMEWFSYWRKYCMDWLLEFGLKEENLRFRD------HKK 267

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGA-DGK 308
           +  + Y+  +            E   ++ R       F          +  ++     G+
Sbjct: 268 EELSHYSTATTDIEYNFPFGWGELWGIANR-----TDFDLRQHMEHSGVDLSYMDPVTGE 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW---------PDSVAPFKISLINIKAHDQ 359
            +        +G  R++ A +  +++ + +             ++AP K +++ +     
Sbjct: 323 KYIPYCIEPSVGVDRLMLAFLIDAYEEEELEDGETRVVLRLHPALAPIKAAVLPLSKK-- 380

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   K+Y +L      V +D+ G  IG ++   D +G P  +       +D  V I+
Sbjct: 381 -LSENAYKLYDQLRNK-FVVDYDETG-SIGKRYRRQDEIGTPFCITYDFDSENDHCVTIR 437

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R T  +  + +EEV  Y   R +
Sbjct: 438 DRDTMQQVRIKIEEVEKYLEERLN 461


>gi|169334057|ref|ZP_02861250.1| hypothetical protein ANASTE_00450 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258774|gb|EDS72740.1| hypothetical protein ANASTE_00450 [Anaerofustis stercorihominis DSM
           17244]
          Length = 466

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/438 (12%), Positives = 139/438 (31%), Gaps = 44/438 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P+G   L+NV     ++  +     +++    L +  +W  SG   ++   ++   
Sbjct: 38  FDYGPIGTLILNNVKNAWFKKFIQECPYNVALDSAILVNPKVWEASGHLKNFNDPLMDCK 97

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +   +        +++       +   + N     Y  +         +      R+F +
Sbjct: 98  NCKARFRADKLIEDDLEKKGLDPNADGWSNEKMEGYIEENNIVCPNCGKHDFTGIRQFNL 157

Query: 158 KDAYSFDLTPEGSKHSYNK--MFVSYLRIFH---------------------RLGLKSIP 194
                  +T +     Y +          F                      R  +    
Sbjct: 158 MFKTFQGVTEDSVNTIYLRPETCQGIFINFKNVQRSTRKKLPFGIGQVGKSFRNEITPGN 217

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    D  +   +  +   DF + S   D ++I   +   EQ + 
Sbjct: 218 FIFRTREFEQMELEFFCEPKDEMKWFEYWRQYCFDFLV-SLGIDKENIKFRDHAKEQLSH 276

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              AT+D+     F    E   ++ R            ++S            +  +   
Sbjct: 277 YSNATTDIEYNYPF-GWGELWGIADRTDFDLKSHE---EFSGKDMKYVDPITNEKFHPYC 332

Query: 315 GSYGIGAMRVVAAVIESSH---------DGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
               +GA R+   ++  ++                   +AP+K++++ +        +  
Sbjct: 333 IEPSVGAGRLFFTLLCDNYVEETLEDGTTRNVFKLHPYLAPYKVAVLPLTKK---LSEEA 389

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++Y++L      V +D+ G  IG ++   D +G P  V +      D  V ++ R T  
Sbjct: 390 TEVYSKL-AKYFMVDYDEAG-NIGKRYRRQDEIGTPYCVTIDFDTKEDGAVTVRDRDTME 447

Query: 426 REDMSLEEVINYASHRFS 443
           +E + ++++ +Y + +  
Sbjct: 448 QERVKIDDLADYITKKVE 465


>gi|310818519|ref|YP_003950877.1| prolyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309391591|gb|ADO69050.1| Prolyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 477

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/413 (14%), Positives = 123/413 (29%), Gaps = 64/413 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +N+  ++ +     G      P L     L  E+   + +  ++  +
Sbjct: 33  GCMVIRPNGYALWENMQRVLDKMFKDLGHKNAYFPLLIPESYLKKEAEHVEGFNPQLAVV 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                  +                                                    
Sbjct: 93  THAGGAKLEEPLV----------------------------------------------- 105

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +      S+ K   SY  +   +   +  MR E        + EF+     
Sbjct: 106 -----IRPTSETIINRSFAKWIQSYRDLPLLINQWANVMRWEMRTRLFLRTTEFLWQEGH 160

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +   ++   +         +         +   T   + T       L     E   
Sbjct: 161 TCHE---TEADAEKETLQMLEVYRTFAEDYMAMPVLTGRKSETERFAG-ALRTYSIEAMM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G     G  ++      F+G DGK H+V   S+G+ + R++  +I +  D  
Sbjct: 217 QDKKALQAGTSHNLGQNFAKAFDTQFQGRDGKQHHVWQTSWGV-STRLIGGLIMTHSDDA 275

Query: 337 GIIWPDSVAPFKISLINI-----KAHDQVCRDACEKIYARLSKVGCDVFWDDMG-EQIGS 390
           G++ P  +AP  + +I I      A      +    + A L + G +V  DD   +  G 
Sbjct: 276 GLVVPPRLAPTHVVIIPILGKAADAEKTQVLEKVHAMAADLRRAGLNVLVDDDDTKSPGF 335

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++   +++G  L+V +G K ++     +  R    +E + L + +  A     
Sbjct: 336 KYNEHEVVGTCLRVELGPKDLAKDSCVMVRRDVRQKEFVPLAQAVEKARAMLD 388


>gi|170782097|ref|YP_001710430.1| glycyl-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156666|emb|CAQ01824.1| glycyl-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 461

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/454 (12%), Positives = 132/454 (29%), Gaps = 50/454 (11%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADL 79
           R G + Q      G    + + PLG    +N+     +     R   + +    +    +
Sbjct: 16  RRGFVFQAGEIYGGSRSAWDYGPLGVALKENIKRQWWQTMVNGRDDVVGLDSSVILPRRV 75

Query: 80  WVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           W  SG  + +   ++      +  +A      +E        + +    +          
Sbjct: 76  WEASGHVEVFSDPLVESLHTHKRYRADHLLEAYEAKHGHPPVNGLADVNDPDTGQPGSWT 135

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------G 189
               E +   G++++    + +          +       F + L    +         G
Sbjct: 136 ----EPQNFSGLLKTFLGPVDNQEGLHYLRPETAQGIFVNFANVLSAARQKPPFGIGQIG 191

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                       I      E + +    E             I +    + D+      +
Sbjct: 192 KSFRNEITPQNWIFRTREFEQMEMEFFVEPGTDAEWHQYW--IDARYAWYTDLGIDPENL 249

Query: 250 EQWTAPYA---------ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +  P A            +        +  E + ++ R           ++ S    +
Sbjct: 250 RLFEHPAAKLSHYSTRTVDIEYRFGFAGGAWGELEGIANRTDYDLRTH---SEASGQDLS 306

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD------SVAPFKISLINI 354
            F     +     +     G  R + A +  ++               +V      L  +
Sbjct: 307 YFDQTKNERWIPYVIEPAAGLTRSMMAFLVDAYHEDEAPNAKGGVDKRTVLRLDRRLAPV 366

Query: 355 K------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           K      + ++       ++ A L K+  ++ +DD G  IG ++   D +G P  V +  
Sbjct: 367 KVAVLPLSRNEKLSPVARELAAELRKIW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTIDF 424

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             + D  V ++ R T  +E + L+E++ Y + + 
Sbjct: 425 DTLDDRAVTVRERDTMAQERIPLDELVGYLAGQL 458


>gi|65321770|ref|ZP_00394729.1| COG0124: Histidyl-tRNA synthetase [Bacillus anthracis str. A2012]
 gi|167636503|ref|ZP_02394800.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170688654|ref|ZP_02879859.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|177653972|ref|ZP_02936013.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190566891|ref|ZP_03019807.1| histidyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|196034468|ref|ZP_03101877.1| histidyl-tRNA synthetase [Bacillus cereus W]
 gi|227817182|ref|YP_002817191.1| histidyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|228929448|ref|ZP_04092469.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935724|ref|ZP_04098537.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948117|ref|ZP_04110401.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229093474|ref|ZP_04224577.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock3-42]
 gi|229123944|ref|ZP_04253136.1| Histidyl-tRNA synthetase 2 [Bacillus cereus 95/8201]
 gi|229604899|ref|YP_002868690.1| histidine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254684159|ref|ZP_05148019.1| histidyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254736506|ref|ZP_05194212.1| histidyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741544|ref|ZP_05199231.1| histidyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254751357|ref|ZP_05203394.1| histidyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254757689|ref|ZP_05209716.1| histidyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|167528096|gb|EDR90893.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170667340|gb|EDT18098.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172081027|gb|EDT66105.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190561882|gb|EDV15851.1| histidyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|195993010|gb|EDX56969.1| histidyl-tRNA synthetase [Bacillus cereus W]
 gi|227006448|gb|ACP16191.1| histidine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|228659246|gb|EEL14894.1| Histidyl-tRNA synthetase 2 [Bacillus cereus 95/8201]
 gi|228689945|gb|EEL43749.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock3-42]
 gi|228811475|gb|EEM57812.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823962|gb|EEM69781.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830236|gb|EEM75852.1| Histidyl-tRNA synthetase 2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229269307|gb|ACQ50944.1| histidine--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 476

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ +K+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLAVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 475


>gi|326381627|ref|ZP_08203321.1| glycyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
 gi|326199874|gb|EGD57054.1| glycyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
          Length = 461

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 64/433 (14%), Positives = 134/433 (30%), Gaps = 36/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  DN+          +R   + +    +    +W  SG  + +   ++   
Sbjct: 32  WDYGPLGVELKDNIKRQWWRTMVTSRDDVVGLDSSVILPRRVWEASGHVEVFTDPLVECT 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
           + + +        E            +         +   K +  E +   G++++    
Sbjct: 92  NCHKRQRQ-DHLQEAYALKKGIDDPDTVPMSEIACPECGTKGQWTEPKAFSGLLKTFLGP 150

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG---- 204
           + D          +       F + +    R         G            I      
Sbjct: 151 VDDQEGLHYLRPETAQGIFVNFKNVMTTARRKPPFGIAQIGKSFRNEITPGNFIFRTREF 210

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V     E       D           D +++       E+ +    +T DV 
Sbjct: 211 EQMEMEFFVKPGEDEEWHKYWIDARHNWYVDLGIDPENLRLYEHPKEKLSHYSKSTVDVE 270

Query: 264 NEKLF--DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F  +   E + V+ R           +K S    + F  A G+     +     G 
Sbjct: 271 YKFGFGGNPWGELEGVANRTDYDLSTH---SKASGEDLSFFDQASGERFTPFVIEPAAGL 327

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLI------NIKA------HDQVCRDACEKIY 369
            R + A +  ++  + +         +  L        +KA       ++        + 
Sbjct: 328 GRSMMAFLCDAYTEEEVPNAKGGTDTRTMLKLDRRLAPVKAAVLPLSRNEKLSPKARDLA 387

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A L K   ++ +DD  + IG ++   D +G P  V V    + D  V I+ R T  +E +
Sbjct: 388 AELRKHW-NIEFDD-AQGIGKRYRRQDEIGTPFCVTVDFDTLDDQAVTIRERDTMSQERV 445

Query: 430 SLEEVINYASHRF 442
           +L++V+ Y   + 
Sbjct: 446 ALDKVVEYLGGKL 458


>gi|197120447|ref|YP_002132398.1| prolyl-tRNA synthetase [Anaeromyxobacter sp. K]
 gi|196170296|gb|ACG71269.1| prolyl-tRNA synthetase [Anaeromyxobacter sp. K]
          Length = 510

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 62/459 (13%), Positives = 140/459 (30%), Gaps = 74/459 (16%)

Query: 3   RSKYFLPILQENPRD-AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
            S+++L +++    D AE ++    +R  M+ +         P G    ++V  ++    
Sbjct: 18  FSEWYLEVIKA--ADLAESST----VRGCMVIK---------PWGYALWEHVQRVLDGMF 62

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             TG +    P      L   E+   + + KE   +                        
Sbjct: 63  KATGHVNAYFPLFIPLSLLEKEAAHVEGFAKECAVVTHHR-------------------- 102

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
                                 L  R G +     L +       +      S+ +   S
Sbjct: 103 ----------------------LEARDGKLVPVGELEEPLVVRPTSETIIGESFARWVQS 140

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +   +   +  +R E        + EF+     G T     ++ +D  +        
Sbjct: 141 YRDLPLLINQWANVVRWEMRTRMFLRTAEFL--WQEGHTAHATEREAIDETMQMLRIYAR 198

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   +        A+       +     E      + ++ G   + G  ++     
Sbjct: 199 -FAEEWMALPVVQGEKTASERFPG-AVRTYCIEAMMQDRKALQAGTSHFLGQNFAKASGI 256

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH--- 357
            F+  +G   +    S+G+ + R++ A+I +  D  G++ P  +AP ++ +I +      
Sbjct: 257 QFQDENGTLTHAWTTSWGL-STRMIGAMIMTHGDDDGMVCPPRLAPQQVVIIPVIQKPEV 315

Query: 358 DQVCRDACEKIYARLSK-----VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +     C ++   L           V  D    Q   +       G P+++ VG K + 
Sbjct: 316 REQVLAWCAELKRELEAQSYAGAPVRVHLDARDVQGAKKSWEWIKKGAPIRLEVGPKDIE 375

Query: 413 DSKVEI--KHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
              V +  + R    ++ +   E++   +      +  L
Sbjct: 376 KGAVFMGRRDRKPREKQSVPRGELVAGVAALLQEIQDAL 414


>gi|72161265|ref|YP_288922.1| glycyl-tRNA synthetase [Thermobifida fusca YX]
 gi|123747241|sp|Q47RL8|SYG_THEFY RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|71914997|gb|AAZ54899.1| glycyl-tRNA synthetase [Thermobifida fusca YX]
          Length = 462

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 63/432 (14%), Positives = 129/432 (29%), Gaps = 34/432 (7%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           + + PLG +  +NV           R   + +    + + ++W  SG  D++   +    
Sbjct: 35  WDYGPLGVELKNNVKRQWWRAMVQEREDIVGLDSCVILAREVWEASGHVDAFVDPLTECQ 94

Query: 97  -----------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
                       +  +      P +     +      K     P  F  +   +   ++ 
Sbjct: 95  SCHKRFRADHLTEAYEAKHGKPPANGLADLNCPHCGAKGAFTEPRMFSGLLRTYVGPVQD 154

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+   R    +  +      E S        ++ +    R  +        +      
Sbjct: 155 ESGLAFLRPETAQGIFINYKNVEQSSRRKIPFGIAQIGKSFRNEITPGNFIFRTREFEQM 214

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              EF V   T E       D           + D++       E+ +     T D+   
Sbjct: 215 EV-EFFVRPGTDEEWHQYWIDTRLQWYIDLGINKDNLRLYEHPKEKLSHYSKRTVDIEYR 273

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             F      +     GI     +   T  K S    + F           +     G  R
Sbjct: 274 FNFAGSEWGELE---GIANRTDYDLSTHSKRSGTDLSYFDQETNTRFIPYVIEPSAGVDR 330

Query: 324 VVAAVIESSHDGKG------IIWPDSVAPFKISLINIKA------HDQVCRDACEKIYAR 371
            +   +  ++           +    V      L  +KA       +         + A+
Sbjct: 331 TMLTFLLDAYTEDEAPNAKGKMEKRVVMRLDPRLAPVKAAVLPLSRNADLSPKARDLAAK 390

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K   +V +DD G  IG ++   D +G P  V +    + D+ V ++ R +  +E +S+
Sbjct: 391 LRKRW-NVEFDDAGA-IGRRYRRQDEIGTPFCVTIDFDTLEDNAVTVRERDSMAQERISI 448

Query: 432 EEVINYASHRFS 443
           ++V  Y + R +
Sbjct: 449 DQVEQYLAERLA 460


>gi|319947863|ref|ZP_08022050.1| glycyl-tRNA synthetase [Dietzia cinnamea P4]
 gi|319438469|gb|EFV93402.1| glycyl-tRNA synthetase [Dietzia cinnamea P4]
          Length = 464

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 58/434 (13%), Positives = 129/434 (29%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  DN+           R   + +    +    +W  SG  +++   ++   
Sbjct: 35  WDYGPLGVELKDNIKKQWWRTFVTGREDVVGLDSSIILPRQVWQASGHVETFTDPLVECR 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
           + +   +      E          +               K +  + +   G+M++    
Sbjct: 95  NCH-TRLRQDHLQEAYAAKKKLDSVADAPMTEIACPNCGTKGQWTDPQLFSGLMKTFLGP 153

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------------LGLKSIPMRAESGPI 202
           + +          +       + + +    R                +        +   
Sbjct: 154 VDNETGLHYLRPETAQGIFINYKNVMTTARRKPPFGIGQIGKAFRNEITPGNFIFRTREF 213

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                  F+   +  E      +D  D+ +     D +++   +   ++     A T D 
Sbjct: 214 EQMEIEFFVKPDEADEWFKRWVEDCWDWFV-DLGIDPENMRRFDVPDDERAHYSAGTIDF 272

Query: 263 HNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
             +  F      E   V+ R             +S      F  A G+ +   +     G
Sbjct: 273 EYKFGFSGNEWGELMGVANRTDYDLTQHQT---HSGEDLQYFDQASGEKYVPYVIEPSFG 329

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFK------ISLINIKA------HDQVCRDACEKI 368
             R + A +  ++              +        L  IKA       +         +
Sbjct: 330 LTRSLMAFLIDAYTEDEAPNAKGGVDTRTVLKLDRRLAPIKAAVLPLSRNADLSPKARDL 389

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A+L K   +V +DD    IG ++   D +G P  + V    + D  V I+ R T  +E 
Sbjct: 390 AAQLRKNW-NVDFDDAQA-IGRRYRRHDEIGTPFCITVDFDTLEDQAVTIRERDTMAQER 447

Query: 429 MSLEEVINYASHRF 442
           +++++V  Y + R 
Sbjct: 448 VAIDQVEGYLAQRL 461


>gi|196230454|ref|ZP_03129316.1| prolyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
 gi|196225384|gb|EDY19892.1| prolyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
          Length = 508

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 61/411 (14%), Positives = 123/411 (29%), Gaps = 55/411 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +N+  I       TG      P       L  E+   + + KE   +
Sbjct: 37  GCMVIKPWGYGLWENMQRIFDGMLKETGHRNAYFPLFIPLSYLAKEAAHVEGFAKECAVV 96

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                       +R        ++     EL     V  + E  
Sbjct: 97  TH--------------------------HRLEADGRGGLRPAPAAELTEPLIVRPTSE-- 128

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +      SY  + +   +  + +  +  P           L  E     ++
Sbjct: 129 ----TIIGASYAKWVQSYRDLPILINQWCNVVRWEMRPRLFLRTAEF--LWQEGHTAHES 182

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E  +  +   +      E    D +       E+  A      +     +     E   
Sbjct: 183 AEQALQETDLILGL---YEKFARDYLALPVITGEKSEA------ERFPGAVKTLCIEAMV 233

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + I+ G   + G  ++      F+  +GK+ Y    S+G+ + R++  V+ +  D  
Sbjct: 234 QDRKAIQAGTSHFLGQNFAKASEIKFQSREGKEEYAWTTSWGV-STRLIGTVLMAHSDDD 292

Query: 337 GIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKV-----GCDVFWDDMGEQI 388
           G+I P  +AP +I ++ I    +       A +K+ A L           V  D      
Sbjct: 293 GLILPPRIAPAQIVILPIAPKPETRDAVFAAADKLAAELRAQTAFGEKISVEVDKRDIGG 352

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEI--KHRLTGIREDMSLEEVINY 437
           G++       G P+++ +G + +    V +  + R    +E +   E +  
Sbjct: 353 GTKSWEWIKKGVPIRIELGPRDLEKGTVAVARRDRGPKEKEFVPNAEFVAK 403


>gi|116328846|ref|YP_798566.1| glycyl-tRNA synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331755|ref|YP_801473.1| glycyl-tRNA synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280506|sp|Q04QV5|SYG_LEPBJ RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|122283369|sp|Q04Z62|SYG_LEPBL RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|116121590|gb|ABJ79633.1| Glycine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125444|gb|ABJ76715.1| Glycine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 464

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 61/453 (13%), Positives = 144/453 (31%), Gaps = 46/453 (10%)

Query: 28  RTGMI---HQHSKGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G +    +   G+   + + P G + L N+  +  +     R   + +    L +  +
Sbjct: 20  RRGFVYPGSEIYGGLSNTFDYGPYGVELLQNLKQLWWKFFVHLREDVVGLDSSILLNPKV 79

Query: 80  WVESGRYDSYGKEMLRLADRNDK-------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           W  SG   ++   ++   +   +           G      +T    + +    N     
Sbjct: 80  WEASGHVSNFTDPLIDCKNCKTRIRADKFLEDQKGEGFATGLTLEKMNQVIKENNFSCPN 139

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH------ 186
              +  F +          S     +D+    L PE ++  +                  
Sbjct: 140 CGQRGTFTEARDFNLMFKTSHGASAEDSLDIYLRPETAQGIFLNFKNVVSTTRRKIPFGI 199

Query: 187 -------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                  R  + +      +          F       E         M++         
Sbjct: 200 AQIGKSFRNEIMARQFVFRTREFEQMEMEFFCEPGTQKEWFSHWVNYCMNWLTEQVGVKK 259

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +++       E+ +  Y+  +     K      E   +++R     +     +       
Sbjct: 260 ENLRIREHEKEELS-FYSEGTSDIEFKYNFGWGELWGIASRTDYDLNQHQKFS----GED 314

Query: 300 ATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII---------WPDSVAPFKI 349
             ++     K +   +    +G  R+  AV+  ++  + +          +   +AP K+
Sbjct: 315 LKYQDQVQNKKYVPFVVEPALGVNRLFLAVVTDAYQEEKLPDGEIRTVLRFSPKIAPVKV 374

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           ++  +   D    +   +I+A LSK+G ++ +DD G  IG ++   D +G P  + V   
Sbjct: 375 AVFPLMKKD-GLLEKSREIFADLSKLG-NIEYDDSGA-IGKRYRRQDEIGTPFCITVDYD 431

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + D  V ++ R +  +E +S+  + N+   R 
Sbjct: 432 TLKDDTVTVRERDSMAQERVSVTRLRNWLFERL 464


>gi|323704147|ref|ZP_08115726.1| histidyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536213|gb|EGB25985.1| histidyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 417

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 64/400 (16%), Positives = 127/400 (31%), Gaps = 11/400 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  +IRE     G  E+  P  +  +L++       D   KEM    D++ +++   
Sbjct: 20  WQYLENMIREICADFGFKEIRTPGFEHTELFLRGVGESTDIVRKEMYTFNDKSGRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F  H      +P   Y I   +R E      +    +F ++   S D   
Sbjct: 80  PEGTSPAVRAFVEHNLYAETMPVKIYYITPVYRYERPQSGRLREHHQFGIEMFGSNDALA 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI------VLADTGETQV 221
           +    S      + L + +     +                EF+      +  D  E   
Sbjct: 140 DAEVISVAMTLFNKLGLKNLELNINSIGCPNCRREYNKALKEFLGENIENLCDDCKERYK 199

Query: 222 FCSKDFMDFPIPSENTDFDDI-ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                 +D  + S      D  + LN + +     + +      E  F+ +   K V  R
Sbjct: 200 INPMRVLDCKVESCKRILKDAPLMLNYLCDDCKNHFESLQSYLKEAGFNFIINPKIV--R 257

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           G++      F    +   +       G+   +     G     V   +            
Sbjct: 258 GLDYYTKTAFEIISNDIGAQGTVCGGGRYDGLVEECGGPSVPGVGFGLGLERLLLTLENS 317

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              +   K   + I       +     +  +L  +G  V  D+MG  + +Q   A+ L  
Sbjct: 318 GIEIPAPKRPDLFICTIGNEAKKYAFSMATKLRSLGISVEIDNMGRSLKAQMKYANKLNV 377

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              +I+G   + + KV++K+  TG    + L+++ +  S 
Sbjct: 378 RYTIILGEDELKNGKVKMKNMDTGEESAIELDKIYDKISE 417


>gi|312214020|emb|CBX94022.1| similar to prolyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 561

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/430 (15%), Positives = 118/430 (27%), Gaps = 82/430 (19%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      +++ A    +           P   SAD L  E    + +  E+  
Sbjct: 77  AGCYILEPSSYAIWESIKAWFDAKIKTRKTRNAYFPIFISADNLEREKEHVEGFAAEVAW 136

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E  M   F   I+S+R+LP    Q     R           
Sbjct: 137 VTKGGKSDLEKPVAVRPTSETAMYPYFARKIQSHRDLPLKLNQWNNVVR----------- 185

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             EF           P      +         +        +    +             
Sbjct: 186 -WEF-------KHPMPFIRSREFLWQEGHTAHLTEEEASAEVLQILD------------- 224

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDS 270
                               +         +    ++ E++  A Y  T +         
Sbjct: 225 ----------------WYSDVYQNLLAVPVVKGTKTVNEKFPGADYTTTIEGFIPA---- 264

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG----ADGKDHYVQMGSYGIG-AMRVV 325
                  + RGI+       G  +S   + T +      +GK  +V +     G   R +
Sbjct: 265 -------TGRGIQAATSHCLGQHFSKMFNITVEDPTAKENGKSEHVHVWQTSWGLTTRSI 317

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCD 378
             +I +  D +G++ P  VA  ++ LI +           +      + I   L +VG  
Sbjct: 318 GVMILTHGDNRGLVIPPRVAEIQVVLIPVGVTAKMSAEDKEALYSKVKNIADDLHEVGVR 377

Query: 379 VFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR----EDMSLEE 433
           V  D   G   G +F   +L G PL++  G K      V    R    +       S++ 
Sbjct: 378 VETDYREGYSPGWKFNDWELKGIPLRIEFGPKDAEKGVVTTSRRDIDDKDAARGTTSVDN 437

Query: 434 VINYASHRFS 443
           +         
Sbjct: 438 IKTEIPKLLE 447


>gi|163841662|ref|YP_001626066.1| glycyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
 gi|162955138|gb|ABY24653.1| glycyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
          Length = 479

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 66/453 (14%), Positives = 138/453 (30%), Gaps = 48/453 (10%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADL 79
           R G + Q      G    + + PLG +  +N+     +   R     +      +     
Sbjct: 34  RRGFVFQAGEIYGGSRSAWDYGPLGVELKENIKKQWWQTFIRGRGDMVGLDSSVILPTPT 93

Query: 80  WVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           WV SG  +++   ++      +  +A      +         + +   ++          
Sbjct: 94  WVASGHVETFTDPLVESLHTHKRFRADHLIEAYTAKHGHPPENGLADIKDPDTGQPGSWT 153

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH----------- 186
               E +   G+M++    + +          +       F + L               
Sbjct: 154 ----EPQLFSGLMKTFLGPVDNQEGLHYLRPETAQGIFTNFNNVLTTSRKKPPFGIGQIG 209

Query: 187 ---RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
              R  +        +          F   AD  E          ++ +     + D++ 
Sbjct: 210 KVFRNEITPGNFIFRTREFEQMEIEFFTAPADADEWFKHWVDACWEWFV-DLGINPDNMR 268

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSAT 301
             +   +      A T DV  +  F      + +   GI     F     +K S    + 
Sbjct: 269 KFDVPEDDRAHYSAGTIDVEYKFGFQGSEWGELM---GIANRTDFDLNNHSKASGTELSY 325

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK------ISLINIK 355
           F  A G+ +   +     G  R + A +  ++              +        L  IK
Sbjct: 326 FNQASGERYTPYVIEPSFGLTRSMMAFLIDAYTEDQAPNTKGGVDTRTVLKLDPRLAPIK 385

Query: 356 A------HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           A       ++      + + A L K   ++ +DD G  IG ++   D +G P  + V   
Sbjct: 386 AAVLPLSRNEDLSPKAKDLAAELRKSW-NIEFDDAGA-IGRRYRRQDEVGTPFCITVDFD 443

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + D  V I+ R +  +E ++L++V  Y + R 
Sbjct: 444 TLEDQAVTIRERDSMSQERVALDKVRGYLAERL 476


>gi|226360355|ref|YP_002778133.1| glycyl-tRNA synthetase [Rhodococcus opacus B4]
 gi|226238840|dbj|BAH49188.1| glycyl-tRNA synthetase [Rhodococcus opacus B4]
          Length = 468

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 61/433 (14%), Positives = 130/433 (30%), Gaps = 36/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +R   + +    +   ++WV SG    +     E L
Sbjct: 39  WDYGPLGVELKENIKKQWWRNMVTSREDVVGLDSSVILPREVWVASGHVGVFNDPLVECL 98

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP--------- 145
               R+ +  +     E+   D            P      Q     +            
Sbjct: 99  NCHKRHRQDHLQEAYAEKKGLDNPDDVPMDVVGCPDCGTVGQWTEPRDFNMMLKTYLGPV 158

Query: 146 --RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G+   R    +  +        +        +  +    R  +        +    
Sbjct: 159 ESEEGMHYLRPETAQGIFVNFANVLTTSRKKPPFGIGQIGKSFRNEITPGNFIFRTREFE 218

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                 F+   +  E   +     MD+       + D++       ++ +     T D+ 
Sbjct: 219 QMEMEFFVKPGEDEEWHQYWIDYRMDWYT-GLGINKDNLRLYEHAQDKLSHYSKRTVDIE 277

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               F      +     G+     F   T  K+S      +  A G+ +   +     G 
Sbjct: 278 YRFHFQGSEWGELE---GVANRTDFDLSTHSKHSGTDLNYYDQASGERYTPYVIEPAAGL 334

Query: 322 MRVVAAVIESSHDGKGIIWPD------SVAPFKISLINIKA------HDQVCRDACEKIY 369
            R + A +  ++               +V      L  +KA       +       + + 
Sbjct: 335 TRSLMAFLVDAYTEDEAPNAKGGVDKRTVLRLDRRLAPVKAAVLPLSRNADLTPKAKDLA 394

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A L +   +V +DD G  IG ++   D +G P  + V    + D  V ++ R +  +E +
Sbjct: 395 ATLRQHW-NVEFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLEDHAVTVRERDSMAQERV 452

Query: 430 SLEEVINYASHRF 442
           +L++V  Y + R 
Sbjct: 453 ALDQVEGYLAQRL 465


>gi|111018230|ref|YP_701202.1| glycyl-tRNA synthetase [Rhodococcus jostii RHA1]
 gi|110817760|gb|ABG93044.1| glycine--tRNA ligase [Rhodococcus jostii RHA1]
          Length = 463

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 61/433 (14%), Positives = 130/433 (30%), Gaps = 36/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +R   + +    +   ++WV SG    +     E L
Sbjct: 34  WDYGPLGVELKENIKKQWWRNMVTSREDVVGLDSSVILPREVWVASGHVGVFNDPLVECL 93

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP--------- 145
               R+ +  +     E+   D            P      Q     +            
Sbjct: 94  NCHKRHRQDHLQEAYAEKKGLDNPDDVPMDVVACPDCGTVGQWTEPRDFNMMLKTYLGPV 153

Query: 146 --RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G+   R    +  +        +        +  +    R  +        +    
Sbjct: 154 ESEEGMHYLRPETAQGIFVNFANVLTTSRKKPPFGIGQIGKSFRNEITPGNFIFRTREFE 213

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                 F+   +  E   +     MD+       + D++       ++ +     T D+ 
Sbjct: 214 QMEMEFFVKPGEDEEWHQYWIDYRMDWYT-GLGINKDNLRLYEHAQDKLSHYSKRTVDIE 272

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               F      +     G+     F   T  K+S      +  A G+ +   +     G 
Sbjct: 273 YRFHFQGSEWGELE---GVANRTDFDLSTHSKHSGTDLNYYDQATGERYTPYVIEPAAGL 329

Query: 322 MRVVAAVIESSHDGKGIIWPD------SVAPFKISLINIKA------HDQVCRDACEKIY 369
            R + A +  ++               +V      L  +KA       +       + + 
Sbjct: 330 TRSLMAFLVDAYTEDEAPNAKGGVDKRTVLRLDRRLAPVKAAVLPLSRNADLTPKAKDLA 389

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A L +   +V +DD G  IG ++   D +G P  + V    + D  V ++ R +  +E +
Sbjct: 390 ATLRQHW-NVEFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLEDHAVTVRERDSMAQERV 447

Query: 430 SLEEVINYASHRF 442
           +L++V  Y + R 
Sbjct: 448 ALDQVEGYLAQRL 460


>gi|310287029|ref|YP_003938287.1| glycyl-tRNA synthetase [Bifidobacterium bifidum S17]
 gi|311063902|ref|YP_003970627.1| blycyl-tRNA synthetase [Bifidobacterium bifidum PRL2010]
 gi|309250965|gb|ADO52713.1| glycyl-tRNA synthetase [Bifidobacterium bifidum S17]
 gi|310866221|gb|ADP35590.1| GlyS Glycyl-tRNA synthetase [Bifidobacterium bifidum PRL2010]
          Length = 506

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 70/440 (15%), Positives = 140/440 (31%), Gaps = 42/440 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +    +WV SG    +     E L
Sbjct: 33  WDYGPLGVALKDNIKREWWRSMVVTRGDVVGVDTSIILPPAVWVASGHVSVFNDPLIECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           +   R     +     E+    +  + +K                  E R    ++R+  
Sbjct: 93  KCHKRQRSDKLEESYAEKHGDKLPENGLKDIVCPECGTRGEWT----EPRDFNMMLRTHL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +             +G            I    
Sbjct: 149 GPVEDENSLHYLRPETAQGIFVDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTR 208

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V+  T E       D           + +++       E+ +     T D
Sbjct: 209 EFEQMEMEFFVVPGTDEEWHQYWIDTRTRWYTDLGINPENLRHYEHPKEKLSHYSKRTVD 268

Query: 262 VHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  +  F      E + ++ R           +K+S    + F  A G+     +     
Sbjct: 269 IEYKFGFQGSDWGELEGIANRTDYDLSAH---SKHSGEDLSYFNQAAGEKFVPYVIEPAA 325

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++D                      +AP K +++ +    ++      
Sbjct: 326 GLTRSLMAFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQS-IAH 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + A L +    + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +
Sbjct: 385 DLAADLRQHEWMIDYDEAGA-IGRRYRREDEIGTPLCITVDFDTIDDQAVTIRERDTMQQ 443

Query: 427 EDMSLEEVINYASHRFSNNR 446
           E ++L++V +Y + R S  R
Sbjct: 444 ERVALDKVADYVAARVSEKR 463


>gi|228476027|ref|ZP_04060735.1| glycine--tRNA ligase [Staphylococcus hominis SK119]
 gi|314936314|ref|ZP_07843661.1| glycine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
 gi|228269850|gb|EEK11330.1| glycine--tRNA ligase [Staphylococcus hominis SK119]
 gi|313654933|gb|EFS18678.1| glycine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
          Length = 463

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/452 (15%), Positives = 146/452 (32%), Gaps = 69/452 (15%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN-----RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +N+     ++         G   +    L +   W  SG   ++   M+
Sbjct: 32  WDYGPLGVELKNNIKKAWWQKFITQSPYNVG---IDAAILMNPKTWEASGHLGNFNDPMI 88

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS-- 152
              D +          E+ M +           L F   +  +     + P  G      
Sbjct: 89  DNKD-SKIRYRADKLIEDYMQNEKGDENFIADGLSFEEMKRIIDDEGIVCPVSGTANWTD 147

Query: 153 -REFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFH-----------RLGLKSIP 194
            R+F +       +T   +   +        +FV+Y  +             ++G     
Sbjct: 148 IRQFNLMFKTFQGVTEGSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRN 207

Query: 195 MRAESGPIGGDLSHEFI---VLADTGE-------TQVFCSKDFMDFPIPSENTDFDDIIS 244
                  I      E +        GE        + F S+   D  I  EN    D   
Sbjct: 208 EITPGNFIFRTREFEQMELEFFCKPGEEIEWQNYWKTFASQWLKDLNINEENMRLRD--- 264

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                E+  + Y+  +     K      E   +++R       F    K+S      F+ 
Sbjct: 265 ---HDEEELSHYSNATTDIEYKFPFGWGELWGIASR-----TDFDL-KKHSEHSGEDFRY 315

Query: 305 ---ADGKDHYVQMGSYGIGAMRVVAAVIESSHD----------GKGIIWPDSVAPFKISL 351
                 + +        +GA RV  A +  ++D             + +  ++AP+K ++
Sbjct: 316 HDPETNEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVMHFHPALAPYKAAI 375

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +        +   KI+ +LS     V +D+  + IG ++   D +G P  +      +
Sbjct: 376 LPLSKK---LSEEAIKIFEQLSSK-FSVDFDES-QSIGKRYRRQDEIGTPYCITFDFDSL 430

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            D++V ++ R +  +  M + E+  + + +  
Sbjct: 431 EDNQVTVRDRDSMEQVRMPISELETFLAEKVK 462


>gi|229158019|ref|ZP_04286090.1| Histidyl-tRNA synthetase 2 [Bacillus cereus ATCC 4342]
 gi|228625472|gb|EEK82228.1| Histidyl-tRNA synthetase 2 [Bacillus cereus ATCC 4342]
          Length = 476

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 123/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ +K+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   T  +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATSEQEEVALDVFASYVAEKL 475


>gi|119963161|ref|YP_947256.1| glycyl-tRNA synthetase [Arthrobacter aurescens TC1]
 gi|119950020|gb|ABM08931.1| glycyl-tRNA synthetase [Arthrobacter aurescens TC1]
          Length = 461

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 140/453 (30%), Gaps = 48/453 (10%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNR--TGAIEMSVPTLQSADL 79
           R G + Q      G    + + PLG +  +N+     +   R     + +    +    +
Sbjct: 16  RRGFVFQAGEIYGGSRSAWDYGPLGAELKENIKRQWWQSMVRGREDVVGLDSSVILPRQV 75

Query: 80  WVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           W  SG  + +   ++      +  +A      +EE       + +K              
Sbjct: 76  WEASGHVEVFSDPLVECLSCHKRYRADHLEEEYEEKKGRPPENGLKDIACANCGTRGAWT 135

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------G 189
               E +   G++++    + +          +       F + L    +         G
Sbjct: 136 ----EPQEFSGLLKTFLGPVANDEGMHYLRPETAQGIFVNFNNVLTTSRKKPPFGIGQIG 191

Query: 190 LKSIPMRAESGPIGG-----DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                       I        +  EF V   T E                     D++  
Sbjct: 192 KSFRNEITPGNFIFRTREFEQMEMEFFVEPGTDEEWHQYWMKERMSWYTDLGIREDNLRF 251

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATF 302
               +E+ +     T+D+     F      +     GI     F   T  K S    + F
Sbjct: 252 FEHPLEKLSHYSKGTTDIEYRFGFQGSEWGELE---GIANRTDFDLSTHAKASGTDLSYF 308

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKI 349
             A  + +   +     G  R   A +  ++                       +AP K 
Sbjct: 309 NQATNERYTPFVIEPAAGLTRSFMAFLIDAYTEDEAPNAKGGVDVRTVLKLDPRLAPVKA 368

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           +++ + + ++      + + A+L K   ++ +DD G  IG ++   D +G P  + V   
Sbjct: 369 AVLPL-SRNEDLSPKAKALGAQLRKNW-NIDFDDAGA-IGRRYRRQDEIGTPFCITVDFD 425

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + D  V I+ R T  +E +SL++V  Y + R 
Sbjct: 426 TLEDQAVTIRERDTMSQERVSLDKVEGYLAARL 458


>gi|188588755|ref|YP_001919624.1| glycyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|251778464|ref|ZP_04821384.1| glycine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188499036|gb|ACD52172.1| glycyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|243082779|gb|EES48669.1| glycine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 463

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 59/439 (13%), Positives = 139/439 (31%), Gaps = 45/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     +      L ++D+WV SG    +   ++   
Sbjct: 34  WDYGPLGVEFKNNVKKAWWKKFVQESPYNVGLDSAILMNSDVWVASGHVGGFSDPLMDCK 93

Query: 98  --------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ--IQLKFRDELRPRF 147
                   D+  +  +     E    D + +                       ++R   
Sbjct: 94  ECKARFRADKIVEDHMTENGAEVASADGWTNEQLKEYIESNNIVCPKCGKMNYTDIRKFN 153

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSI 193
            + ++ + + +DA S       +       F +  R                 R  +   
Sbjct: 154 LMFKTFQGVTEDAKSEIYLRPETAQGIFVNFKAVQRSSRKKVPFGIAQIGKSFRNEITPG 213

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                +          F       E   +      +F +        + + +    E+  
Sbjct: 214 NFTFRTREFEQMELEFFCKPGTDLEWHKYWKDYCWNFLLN--LNVKTENLRMRDHGEEEL 271

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           + Y+  +            E   ++ R            ++S          + + +   
Sbjct: 272 SFYSNATSDIEYLFPFGWGELWGIADRTDYDLRKHQ---EHSGQDLNYLDQTNNEKYIPY 328

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDA 364
           +    +GA RV  A +  ++D + +             ++APFK +++ +        + 
Sbjct: 329 VIEPSLGADRVTLAFLIEAYDEEELDGGDSRTVLHLHPALAPFKAAILPLSKK---LSEN 385

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++Y+ LSK   ++ +D+ G  IG ++   D +G P  + V    + D  V I++R T 
Sbjct: 386 ALEVYSNLSKK-FNIDFDETG-SIGKRYRRQDEIGTPYCITVDFDTLEDQCVTIRNRDTM 443

Query: 425 IREDMSLEEVINYASHRFS 443
            +E + + E+  Y      
Sbjct: 444 EQERIKISELEAYIEKSLD 462


>gi|154505898|ref|ZP_02042636.1| hypothetical protein RUMGNA_03440 [Ruminococcus gnavus ATCC 29149]
 gi|153793916|gb|EDN76336.1| hypothetical protein RUMGNA_03440 [Ruminococcus gnavus ATCC 29149]
          Length = 463

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 71/445 (15%), Positives = 144/445 (32%), Gaps = 56/445 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   W+ SG    +   +
Sbjct: 33  WDYGNLGVELKNNVKKAWWKKF----VQESPYNVGVDCAILMNPQTWIASGHLGGFSDPL 88

Query: 94  LRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           +   + N++     +I     E  +         S   +     +  +K       +   
Sbjct: 89  MDCKECNERFRADKLIEDYAQENGIELEGSVDAWSKEQMSAYIEEHDIKCP--SCGKHNF 146

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              REF +       +T +     Y        +FV++  +      K     A+ G   
Sbjct: 147 TEIREFNLMFKTFQGVTEDAKNVVYLRPETAQGIFVNFKNVQRTSRKKIPFGIAQIGKSF 206

Query: 204 GDLSH----------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            +                   EF     T        K F    + S     D++   + 
Sbjct: 207 RNEITPGNFTFRTREFEQMELEFFCEPGTDLEWFNYWKSFCLNWLSSLGLKDDEVRYRDH 266

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             E+ +  Y+  +            E   ++ R            + S      F     
Sbjct: 267 DAEELS-FYSKATTDVEFLFPFGWGELWGIADRTDYDLTQHQ---EVSKQDLTYFDDEKK 322

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHD 358
           + +   +    +GA R+V A + S++D + +          +  ++AP KI ++ +    
Sbjct: 323 EKYIPYVIEPSLGADRMVLAFLCSAYDEEELEGGDTRTVLHFHPALAPVKIGVLPLSKK- 381

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  EK++A LSK   +  +DD G  IG ++   D +G P  V        D  V +
Sbjct: 382 --LNEGAEKVFAELSKT-YNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFDSEEDGAVTV 437

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +E + +E++  Y   +F 
Sbjct: 438 RDRDTMEQERVKIEDLKAYFEKKFE 462


>gi|225017181|ref|ZP_03706373.1| hypothetical protein CLOSTMETH_01107 [Clostridium methylpentosum
           DSM 5476]
 gi|224950100|gb|EEG31309.1| hypothetical protein CLOSTMETH_01107 [Clostridium methylpentosum
           DSM 5476]
          Length = 482

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 67/440 (15%), Positives = 139/440 (31%), Gaps = 55/440 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + + PLG +  +NV     ++       E      +    L + ++WV SG    +   +
Sbjct: 59  WDYGPLGVEFKNNVKRAWWKKF----VQECKYNVGLDSALLMNPEVWVASGHVGGFSDPL 114

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           +   +   +         +            + N     +  +   +            R
Sbjct: 115 MDCKECKTRHRADQLIETQTDAAPNG-----WSNEQMMEFIKEQGVKCPNCGSTNFTDIR 169

Query: 154 EFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            F +       +T +     Y        +FV++  I      K     A+ G    +  
Sbjct: 170 AFNLMFKTFQGVTEDAKNEIYLRPETAQGIFVNFANIQRTTRKKLPFGVAQVGKSFRNEI 229

Query: 208 H----------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                            EF     T        KD     + S     ++I   +   E+
Sbjct: 230 TPGNFTFRTREFEQMELEFFCAPGTDLEWFHYWKDACKNWLLSLGIKEENIRLRDHDPEE 289

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
            +    AT+D+     F    E   ++ R             +S      F     + + 
Sbjct: 290 LSHYSNATTDIEFVFPF-GWGELWGIADRTNFDLTQHQ---NHSGKSLEYFDQQKNEHYV 345

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCR 362
             +    +GA RV  A +  ++D +          +    ++APFK  ++ +        
Sbjct: 346 PYVIEPSLGADRVALAFLCEAYDEEEIAEGDTRVVMHLHPALAPFKACVLPLSKK---LN 402

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   ++Y +L      V +DD G  IG ++   D +G P+ +    + V D  V ++ R 
Sbjct: 403 EQAGEVYEQL-AKHFMVDYDDTG-SIGKRYRRQDEIGTPVCITYDFESVEDGCVTVRDRD 460

Query: 423 TGIREDMSLEEVINYASHRF 442
           T  +E + ++E++ Y     
Sbjct: 461 TMQQERIRIDELVGYIEKML 480


>gi|153853789|ref|ZP_01995145.1| hypothetical protein DORLON_01136 [Dorea longicatena DSM 13814]
 gi|149753539|gb|EDM63470.1| hypothetical protein DORLON_01136 [Dorea longicatena DSM 13814]
          Length = 466

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 68/446 (15%), Positives = 142/446 (31%), Gaps = 55/446 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   W+ SG    +   +
Sbjct: 33  WDYGNLGVELKNNVKKAWWKKFI----QESPFNVGVDCAILMNPQTWIASGHLGGFSDPL 88

Query: 94  LRLADRNDK--AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +++  A      +           + ++       +  + +       +     
Sbjct: 89  MDCKQCHERFRADKVIEDYCAENNIELDGAVDAWTQEQMKNFIDENQIPCPTCGKHDFTD 148

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP- 201
            R+F +       +T +     Y +          F +  R   +     I    +S   
Sbjct: 149 IRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKLPFGIGQIGKSFRN 208

Query: 202 ------------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                           +  EF    DT        K F    + S     D++   +   
Sbjct: 209 EITPGNFTFRTREFEQMELEFFCKPDTDLEWFDYWKKFCLNWLSSLGLKEDEVRYRDHDK 268

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E+ +  Y+  +            E   ++ R            K S      F     + 
Sbjct: 269 EELS-FYSKATTDVEFLFPFGWGELWGIADRTDYDLTQHQ---KVSGQDLTYFDDETKEK 324

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIKAH 357
           +   +    +GA R+V A + S++D + I             +  ++AP KI ++ +   
Sbjct: 325 YIPYVIEPSLGADRMVLAFLCSAYDEEEIGTEEKPDTRTVLHFHPALAPVKIGVLPLSKK 384

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  EK++A+LSK   +  +DD G  IG ++   D +G P  V        D  V 
Sbjct: 385 ---LNEGAEKVFAQLSKK-YNCEYDDRG-NIGKRYRRQDEIGTPFCVTYDFDSEEDGAVT 439

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ R T  +E + +E++  Y   +F 
Sbjct: 440 VRDRDTMEQERIKIEDLDAYFEKKFE 465


>gi|30264473|ref|NP_846850.1| histidyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47529931|ref|YP_021280.1| histidyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187294|ref|YP_030546.1| histidyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|49481486|ref|YP_038454.1| histidyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52141104|ref|YP_085725.1| histidyl-tRNA synthetase [Bacillus cereus E33L]
 gi|165871996|ref|ZP_02216637.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167640711|ref|ZP_02398971.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170709260|ref|ZP_02899680.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|254724670|ref|ZP_05186453.1| histidyl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|39932344|sp|Q81LI6|SYH2_BACAN RecName: Full=Histidyl-tRNA synthetase 2; AltName:
           Full=Histidine--tRNA ligase 2; Short=HisRS 2
 gi|81394747|sp|Q6HDC2|SYH2_BACHK RecName: Full=Histidyl-tRNA synthetase 2; AltName:
           Full=Histidine--tRNA ligase 2; Short=HisRS 2
 gi|81686102|sp|Q634E2|SYH2_BACCZ RecName: Full=Histidyl-tRNA synthetase 2; AltName:
           Full=Histidine--tRNA ligase 2; Short=HisRS 2
 gi|30259131|gb|AAP28336.1| histidine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47505079|gb|AAT33755.1| histidyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181221|gb|AAT56597.1| histidyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|49333042|gb|AAT63688.1| histidine--tRNA ligase (histidyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974573|gb|AAU16123.1| histidine--tRNA ligase (histidyl-tRNA synthetase) [Bacillus cereus
           E33L]
 gi|164712286|gb|EDR17822.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167511283|gb|EDR86669.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170125836|gb|EDS94743.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0389]
          Length = 423

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 13  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 72

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 73  ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 130 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 188

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ +K+ + L     
Sbjct: 189 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDV 248

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 249 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 308

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 309 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLAVEKDYLDRKM 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 369 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 422


>gi|68305000|gb|AAY90011.1| predicted glycyl-tRNA synthetase [uncultured bacterium BAC13K9BAC]
          Length = 446

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 78/487 (16%), Positives = 156/487 (32%), Gaps = 107/487 (21%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIRE--EQNRTGAIEMS 70
           EI S  L  R G I Q +      +G+Y + PLG +  +N+ +   +    NR     + 
Sbjct: 3   EIVS--LCKRRGFIFQSNEIYGGLQGLYDYGPLGVELKNNLKSAWWKSIVYNRDDVEGLD 60

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRL---------------------------------- 96
              L   D+   SG  D++   ++                                    
Sbjct: 61  TSILTHPDVLKYSGHEDTFTDPLVDCKSCGLRFREDQVPDQCKDEELTEPRDFNLMFKTN 120

Query: 97  ----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D +  A +   T +++  +       + R+LPF   QI   FR+E+ PR  + R 
Sbjct: 121 VGPVTDDSSLAYLRPETAQQIYINFKNVLDSTSRSLPFGIAQIGKSFRNEITPRNFIFRV 180

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLS 207
           REF   +   F L P   +  + K   + +  +   G+    ++      +        +
Sbjct: 181 REFEQMELEFFVL-PGDDEVWHQKWIKNRVSWWKEQGIPLEKLKLLTVTGDDLAHYSKST 239

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            + +     GE ++    +  DF + S   +                             
Sbjct: 240 VDIMYKFPHGEEELEGIANRTDFDLGSHTKN----------------------------- 270

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                          ++                  +  +       +     G  R V A
Sbjct: 271 -------------QKDLNITAQVKNNVDSNTRLAIQNENNDWVVPYVIEPSAGVDRGVLA 317

Query: 328 VIESSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC- 377
           +I  ++  + +              +AP K ++I +K +++        I + L +    
Sbjct: 318 IINEAYTVENLDNDKKRTVLKLRKHLAPIKAAVIPLKRNNEELVKLTHTIKSTLQQYQIG 377

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  ++ G  IG  +   D +G PL + V    +    V ++ R T  ++ ++L+E+  Y
Sbjct: 378 RVVVENTG-NIGKSYRKHDEIGTPLCITVDFDSLEKKTVTVRDRDTMEQKTIALDEINKY 436

Query: 438 ASHRFSN 444
               FS+
Sbjct: 437 FIDYFSD 443


>gi|306822376|ref|ZP_07455755.1| glycyl-tRNA synthetase beta subunit [Bifidobacterium dentium ATCC
           27679]
 gi|304554374|gb|EFM42282.1| glycyl-tRNA synthetase beta subunit [Bifidobacterium dentium ATCC
           27679]
          Length = 547

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 135/439 (30%), Gaps = 42/439 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +    +WV SG    +     E L
Sbjct: 89  WDYGPLGVALKDNIKREWWRSMVVTRGDVVGVDTSIILPPAVWVASGHVSVFNDPLIECL 148

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R+    +     E+    +  + +K                  E R    ++R+  
Sbjct: 149 NCHKRHRADKLEESYAEKHGDKLPENGLKDIVCPDCGTRGNWT----EPRDFNMMLRTHL 204

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +             +G            I    
Sbjct: 205 GPVEDENSLHYLRPETAQGIFVDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTR 264

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E       D             +++       E+       T D
Sbjct: 265 EFEQMEMEFFVAPGTDEEWHQYWIDARTQWYIDLGVKPENLRHYEHPKEKLAHYSKRTVD 324

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  +  F      +     G+     F      K+S    + F  A G+ +   +     
Sbjct: 325 IEYKFGFQGSDWGELE---GVANRTDFDLSAHAKHSGEDLSYFNQATGEKYVPYVIEPAA 381

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++D                      +AP K +++ +    ++     +
Sbjct: 382 GLTRSLMAFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQS-VAQ 440

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + A L +    + +D+ G  IG ++   D +G PL V V    + D  V I+ R T  +
Sbjct: 441 NLAADLRQHDWMIDYDEAGA-IGRRYRREDEIGTPLCVTVDFDTLDDQAVTIRERDTMQQ 499

Query: 427 EDMSLEEVINYASHRFSNN 445
           E ++L++V +Y + R    
Sbjct: 500 ERVALDKVADYVAARIGEK 518


>gi|187934816|ref|YP_001884426.1| glycyl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|187722969|gb|ACD24190.1| glycine--tRNA ligase [Clostridium botulinum B str. Eklund 17B]
          Length = 463

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 59/439 (13%), Positives = 139/439 (31%), Gaps = 45/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     +      L ++D+WV SG    +   ++   
Sbjct: 34  WDYGPLGVEFKNNVKKAWWKKFVQESPYNVGLDSAILMNSDVWVASGHVGGFSDPLMDCK 93

Query: 98  --------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ--IQLKFRDELRPRF 147
                   D+  +  +     E    D + +                       ++R   
Sbjct: 94  ECKARFRADKIVEDHMTENGAEVASADGWTNEQLKEYIESNNIVCPKCGKMNYTDIRKFN 153

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSI 193
            + ++ + + +DA S       +       F +  R                 R  +   
Sbjct: 154 LMFKTFQGVTEDAKSEIYLRPETAQGIFVNFKAVQRSSRKKVPFGIAQIGKSFRNEITPG 213

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                +          F       E   +      +F +        + + +    E+  
Sbjct: 214 NFTFRTREFEQMELEFFCKPGTDLEWHKYWKDYCWNFLLN--LNVKTENLRMRDHGEEEL 271

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           + Y+  +            E   ++ R            ++S          + + +   
Sbjct: 272 SFYSNATSDIEYLFPFGWGELWGIADRTDYDLKKHQ---EHSGQDLNYLDQTNNEKYIPY 328

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDA 364
           +    +GA RV  A +  ++D + +             ++APFK +++ +        + 
Sbjct: 329 VIEPSLGADRVTLAFLIEAYDEEELDGGDSRTVLHLHPALAPFKAAILPLSKK---LSEN 385

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++Y+ LSK   ++ +D+ G  IG ++   D +G P  + V    + D  V I++R T 
Sbjct: 386 ALEVYSSLSKK-FNIDFDETG-SIGKRYRRQDEIGTPYCITVDFDTLEDQCVTIRNRDTM 443

Query: 425 IREDMSLEEVINYASHRFS 443
            +E + + E+  Y      
Sbjct: 444 EQERIKISELEAYIEKSLD 462


>gi|296816643|ref|XP_002848658.1| prolyl-tRNA synthetase [Arthroderma otae CBS 113480]
 gi|238839111|gb|EEQ28773.1| prolyl-tRNA synthetase [Arthroderma otae CBS 113480]
          Length = 589

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 122/226 (53%), Gaps = 2/226 (0%)

Query: 27  LRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           LR G + ++    G++  LPLG +  + +  +I +   +  A ++S+ +L S  LW +SG
Sbjct: 23  LRAGCLQKYHPYSGVFHLLPLGLRVQEKLERLIDKHMRKLNASKLSLSSLSSQSLWKKSG 82

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           R      E+ RL DR    ++  PTHEE +T +  S +KSYR+LP   YQI  K+RDE R
Sbjct: 83  RLHEGDSEVFRLLDRKKTPLLLAPTHEEEITTVISSLVKSYRDLPLRVYQISRKYRDEPR 142

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           PR G++R REF+MKD Y+FD T   + ++YN +  +Y+ +F  L L  +   A SG +GG
Sbjct: 143 PRHGLLRGREFVMKDLYTFDSTEAEAINTYNTVKDAYMELFEELKLPFVVASAASGNMGG 202

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           +LSHEF   +  GE  +               +      S++  +E
Sbjct: 203 NLSHEFHFPSSKGEDTIVSCSQCEYVFNEELASGKSPNGSISHRLE 248



 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 17/191 (8%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF----------KGADGKDHYVQMGSY 317
             +   +   + + IE+ H F+ GT+YS  + A            +    +   +QMG +
Sbjct: 401 CPNCGNSALKTYQAIELAHTFHLGTRYSGVLQANVAINPATLEEGQQGKTELVPIQMGCH 460

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG- 376
           GIG  R+++AV +   D KG+ WP ++APF+++++  K  ++      + +  +    G 
Sbjct: 461 GIGVSRMISAVSDILADNKGLNWPQAIAPFQVAVVPAKGLEKEAELVYDSVAGQ---NGE 517

Query: 377 -CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRL-TGIREDMSLEE 433
             D   DD  +    +   ADL+G+P+ + VG K  +   +VE++ R    +R  +SLEE
Sbjct: 518 TVDTILDDRNKDFIWKLRDADLVGYPIILAVGKKSWNAGNQVEVQCRQLENLRTTVSLEE 577

Query: 434 VINYASHRFSN 444
           +    S   S 
Sbjct: 578 IPKLVSSLLSK 588


>gi|45658196|ref|YP_002282.1| glycyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|59798554|sp|Q72PW7|SYG_LEPIC RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|45601438|gb|AAS70919.1| glycyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 464

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 60/453 (13%), Positives = 146/453 (32%), Gaps = 46/453 (10%)

Query: 28  RTGMI---HQHSKGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G +    +   G+   + + P G + L N+  +  +     R   + +    L +  +
Sbjct: 20  RRGFVYPGSEIYGGLSNTFDYGPYGVELLQNLKQLWWKYFVHLREDIVGLDSSILLNPKV 79

Query: 80  WVESGRYDSYGKEMLRLADRNDK-------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           W  SG   ++   ++   +   +           G      +T    + +    N     
Sbjct: 80  WEASGHVSNFNDPLIDCKNCKTRIRADKFLEDQKGEGFATGLTLEKMNQVIKESNFACPN 139

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH------ 186
              +  F +          S     +D+    L PE ++  +                  
Sbjct: 140 CGQRGTFTEARDFNLMFKTSHGASAEDSLDIYLRPETAQGIFLNFKNVVSTTRRKIPFGI 199

Query: 187 -------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                  R  + +      +          F       E         M++         
Sbjct: 200 AQIGKSFRNEIMARQFVFRTREFEQMEMEFFCEPGTQKEWFSHWVNYCMNWLTEQVGIKK 259

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +++       E+ +  Y+  +     K      E   +++R     +     +       
Sbjct: 260 ENLRVREHEKEELS-FYSEGTSDIEFKYNFGWGELWGIASRTDYDLNQHQKFS----GED 314

Query: 300 ATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII---------WPDSVAPFKI 349
             ++     K +   +    +G  R+  AV+  +++ + +          +   +AP K 
Sbjct: 315 LKYQDQVQNKKYVPFVVEPALGVNRLFLAVVTDAYEEEKLPDGETRTVLRFSPKIAPVKA 374

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           ++  +   D    +   +I+A LSK+G ++ +DD G  IG ++   D +G P  + V   
Sbjct: 375 AVFPLMKKD-GLPEKSREIFADLSKLG-NIEYDDGGA-IGKRYRRQDEIGTPFCITVDYD 431

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + D+ V ++ R +  +E +++ ++ N+   R 
Sbjct: 432 TLKDNTVTVRERDSMSQERIAVNQLKNWLFERL 464


>gi|308176710|ref|YP_003916116.1| glycine--tRNA ligase [Arthrobacter arilaitensis Re117]
 gi|307744173|emb|CBT75145.1| glycine--tRNA ligase [Arthrobacter arilaitensis Re117]
          Length = 461

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 75/461 (16%), Positives = 140/461 (30%), Gaps = 62/461 (13%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNA-----IIREEQNRTGAIEMSVPTLQS 76
           R G + Q      G    + + PLG +  +N+        +R  ++  G   +    +  
Sbjct: 16  RRGFVFQAGEIYGGSRSAWDYGPLGTELKENIKREWWQSFVRGREDMVG---LDSSIILP 72

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +W  SG   ++   ++     + +                    K   +         
Sbjct: 73  KAVWEASGHVATFTDPLVECIQCHKRHRQDHLIEAFEA--KKGRAPKDGMSEIACPDCGT 130

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL-------- 188
                E +   G+M++    +            +       F + L    +         
Sbjct: 131 KGQFTEPQMFSGLMKTFLGPVDSEAGLAFMRPETAQGIFVNFANVLTASRKKPPFGIGQI 190

Query: 189 GLKSIPMRAESGPIGGDLSHEFI----------VLADTGETQVFCSKDFMDFPIPSENTD 238
           G            I      E +            A   +    C   F+D  I  EN  
Sbjct: 191 GKAFRNEITPGNFIFRTREFEQMEIEFFTAPEDAPAFFDQWVKDCWAWFLDLGIKEENLR 250

Query: 239 FDDIISLNSIVEQWTAPYAA-TSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYS 295
             D+       E   A Y+A T D      F      E   V+ R            K S
Sbjct: 251 QFDVP------EDERAHYSAGTIDFEYRFGFQGSEWGELMGVANRTDYDLSSH---AKAS 301

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPD 342
               + F  A G+ +   +     G  R + A +  ++                      
Sbjct: 302 GAELSYFNQATGERYTPYVIEPSFGLTRSMMAFLVDAYTEDEAPNTKGGVDKRTVLKMDP 361

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            +AP K +++ + + ++      + + A L K   ++ +DD G  IG ++   D +G P 
Sbjct: 362 RLAPVKAAVLPL-SRNENLSPKAKDLAAELRKRW-NIDFDDAGA-IGRRYRRQDEIGTPF 418

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + V    + D  V I+ R T  +E +SL++V  Y S R +
Sbjct: 419 CITVDFDTLDDQAVTIRERDTMAQERVSLDQVTAYLSERLN 459


>gi|304313817|ref|YP_003848964.1| threonyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587276|gb|ADL57651.1| threonyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 605

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 63/406 (15%), Positives = 128/406 (31%), Gaps = 45/406 (11%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           W P G+   D +   +       GA+ +  P +   +        + +G+   R+ ++  
Sbjct: 218 WYPRGRLIRDLLADYVYMLVTSEGAMPVETPIMYDLEDEAIRVHAEKFGERQYRMKNKK- 276

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPRF-GVMRSREFLMKD 159
             ++           I      +++NLP + Y++    FR E +    G+ R R F M D
Sbjct: 277 -ELMLRYACCFGAFRILSDSFLTWKNLPASIYELSTYSFRLEKKGEVVGLKRLRGFTMPD 335

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            ++     E +   +       ++    L +    +   +         EF         
Sbjct: 336 LHTVCADLEQALTEFAGQVEMCMKTGEDLQVNYEVIFRAT--------REFYEEYSDWVH 387

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
            V                   D I    ++E   +         +    D L        
Sbjct: 388 SVA------------------DRIGKPILLELLPSRKHYWIAKMDFAAIDYLGRPIENPT 429

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI----ESSHDG 335
             I+V     FG  Y               + + +     G++  V   +        D 
Sbjct: 430 VQIDVESGERFGITYVNSDEEEV-------NPIILHCSPTGSIERVICSLLEKTAIEMDE 482

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           K  + P  ++P ++ ++ I    +   +  E + + ++        DD  E +G +   A
Sbjct: 483 KPPMLPVWLSPTQVRVLPIA---ERHLEFAESLVSEMTANDVRADLDDRAETLGKKIRNA 539

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                P  V+VG   +   K+ +  R TG +  M L+E+I      
Sbjct: 540 AQDWVPYVVVVGDSELE-GKLTVNIRSTGEKVQMDLQELIELVRSE 584


>gi|197303356|ref|ZP_03168396.1| hypothetical protein RUMLAC_02079 [Ruminococcus lactaris ATCC
           29176]
 gi|197297640|gb|EDY32200.1| hypothetical protein RUMLAC_02079 [Ruminococcus lactaris ATCC
           29176]
          Length = 478

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 66/442 (14%), Positives = 140/442 (31%), Gaps = 47/442 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +  A  +      L +   W+ SG    +   ++   
Sbjct: 45  WDYGNLGVELKNNVKKAWWKKFVQENAYNVGVDCAILMNPQTWIASGHLGGFSDPLMDCK 104

Query: 98  DRNDK--AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             +++  A                  + ++     + +  + +       +      R+F
Sbjct: 105 QCHERFRADKIIEDFCAEKGIEIEGSVDAWSQEEMSSFIEEHQIPCPTCGKHDFTDIRQF 164

Query: 156 LMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP----- 201
            +       +T +     Y +          F +  R   +     I    +S       
Sbjct: 165 NLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKLPFGIGQIGKSFRNEITP 224

Query: 202 --------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                       +  EF    DT        K+F    + S     D++   +   E+ +
Sbjct: 225 GNFTFRTREFEQMELEFFCKPDTDLEWFDYWKNFCLNWLSSLGLKEDEVRYRDHDKEELS 284

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
             Y+  +            E   ++ R              S      F     + +   
Sbjct: 285 -FYSKATTDVEFLFPFGWGELWGIADRTDYDLTQHQ---NVSGQDLTYFDDETKEKYIPY 340

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVC 361
           +    +GA R+V A + S++D + I             +  ++AP KI ++ +       
Sbjct: 341 VIEPSLGADRMVLAFLCSAYDEENIGTEEKPDMRTVLHFHPALAPVKIGVLPLSKK---L 397

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  EK+Y  L K   +  +DD G  IG ++   D +G P  V        D  V ++ R
Sbjct: 398 NEGAEKVYTELCKY-YNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRDR 455

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            T  +E + +E++  Y   +F 
Sbjct: 456 DTMEQERVKIEDLKAYFEKKFE 477


>gi|171742466|ref|ZP_02918273.1| hypothetical protein BIFDEN_01578 [Bifidobacterium dentium ATCC
           27678]
 gi|171278080|gb|EDT45741.1| hypothetical protein BIFDEN_01578 [Bifidobacterium dentium ATCC
           27678]
          Length = 547

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 68/439 (15%), Positives = 134/439 (30%), Gaps = 42/439 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +    +WV SG    +     E L
Sbjct: 89  WDYGPLGVALKDNIKREWWRSMVVTRGDVVGVDTSIILPPAVWVASGHVSVFNDPLIECL 148

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R+    +     E+    +  + +K                  E R    ++R+  
Sbjct: 149 NCHKRHRADKLEESYAEKHGDKLPENGLKDIVCPDCGTRGNWT----EPRDFNMMLRTHL 204

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +             +G            I    
Sbjct: 205 GPVEDENSLHYLRPETAQGIFVDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTR 264

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E       D             +++       E+       T D
Sbjct: 265 EFEQMEMEFFVAPGTDEEWHQYWIDARTQWYIDLGVKPENLRHYEHPKEKLAHYSKRTVD 324

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  +  F      +     G+     F      K+S    + F  A G+ +   +     
Sbjct: 325 IEYKFGFQGSDWGELE---GVANRTDFDLSAHAKHSGEDLSYFNQATGEKYVPYVIEPAA 381

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++D                      +AP K +++ +    ++     +
Sbjct: 382 GLTRSLMAFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQS-VAQ 440

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            +   L +    + +D+ G  IG ++   D +G PL V V    + D  V I+ R T  +
Sbjct: 441 NLADDLRQHDWMIDYDEAGA-IGRRYRREDEIGTPLCVTVDFDTLDDQAVTIRERDTMQQ 499

Query: 427 EDMSLEEVINYASHRFSNN 445
           E ++L++V +Y + R    
Sbjct: 500 ERVALDKVADYVAARIGEK 518


>gi|312137400|ref|YP_004004737.1| histidyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
 gi|311225119|gb|ADP77975.1| histidyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
          Length = 423

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 65/424 (15%), Positives = 132/424 (31%), Gaps = 30/424 (7%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEML 94
           P G +           NV   +R    R G  E+  P  +   L+  +SG  +   ++M 
Sbjct: 6   PRGTRDFLFEDMELRKNVEMKLRNVFERYGYREIKTPIFEHLKLFTIKSG--EEIKEQMY 63

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+  + +   P     +  ++ + ++ +   P   Y     FR E        R R+
Sbjct: 64  HFKDKGGRNLALRPELTAPIARLYVNKLQRFPK-PIKMYYFGSCFRYERPQAG---RFRQ 119

Query: 155 FLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPIGGDLS 207
           F           +PE    +    +     +  +     I          E   + G+  
Sbjct: 120 FWQFGCELIGGKSPEAEAETIALAYDCLKELGLKNFKIHIGHMGIVRGMLEENGVKGEKQ 179

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSEN-------TDFDDIISLNSIVEQWTAPYAATS 260
              + L D G+ +   S+   +   PSE         +      +   +        +  
Sbjct: 180 DHIMTLIDKGDKEEL-SRYLNEISFPSELQELLFSLIEMKGDSKILDEILDIVGYRRSVE 238

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            +   K  +SL E   V    ++ G          +                       G
Sbjct: 239 AIQELKNLESLLEVFGVKNYLMDPGIARGLDYYTGIVFEIYISKTQICGGGTYNLIELFG 298

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             +V +       D       +    F  + + +       R+A  KI  ++ K G    
Sbjct: 299 GEKVESTGFAFGFDRLVEAVGNKTEKFSFADVFVAPVSDETREAAFKIAQKIRKSGISAD 358

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D    ++G   + AD LG    +IVG K +   +V +K   +G ++++ ++++ +Y   
Sbjct: 359 VDLSRRKLGKLLSYADHLGVKYTIIVGKKELKQKRVTVKDMESGEQKEVQIDDLSDYLRR 418

Query: 441 RFSN 444
               
Sbjct: 419 GLKK 422


>gi|325677071|ref|ZP_08156741.1| glycyl-tRNA synthetase beta subunit [Rhodococcus equi ATCC 33707]
 gi|325552142|gb|EGD21834.1| glycyl-tRNA synthetase beta subunit [Rhodococcus equi ATCC 33707]
          Length = 468

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 57/437 (13%), Positives = 125/437 (28%), Gaps = 44/437 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    +    +W  SG  + +   ++   
Sbjct: 39  WDYGPLGVELKENIKKQWWRNMVTSREDVVGLDSSVILPRQVWEASGHVEVFTDPLVECL 98

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
           + + +        E            +             K +  E +   G++++    
Sbjct: 99  NCHKRHRQ-DHLQEAYAEKHKLDDPDAVAMTEIVCPDCGTKGQWTEPKAFSGLLKTYLGP 157

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESGPI 202
           +            +       F + L                  R  +        +   
Sbjct: 158 VDSETGLHYLRPETAQGIFVNFANVLTTSRKKPPFGIGQIGKSFRNEITPGNFIFRTREF 217

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                  F+   +  E   +     MD+       + D++       E+ +     T D+
Sbjct: 218 EQMEMEFFVKPGEDEEWHQYWIDYRMDWYT-GLGINKDNLRLYEHAQEKLSHYSKRTVDI 276

Query: 263 HNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                F      E + V+ R            K S    + F    G+ +   +     G
Sbjct: 277 EYRFQFQGSEWGELEGVANRTDYDLATH---AKASGTDLSYFDQTSGERYTPYVIEPAAG 333

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK---------------AHDQVCRDAC 365
             R + A +    D        +          +K               + +       
Sbjct: 334 LTRSLMAFLV---DAYTEDEAPNAKGGVDKRTVLKLDRRLAPVKAAVLPLSRNADLSPKA 390

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +   L +   ++ +DD G  IG ++   D +G P  + V    + D  V I+ R T  
Sbjct: 391 KDLATTLRQHW-NIEFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLEDQAVTIRERDTMA 448

Query: 426 REDMSLEEVINYASHRF 442
           +E +SL++V  Y + R 
Sbjct: 449 QERVSLDQVEGYLAQRL 465


>gi|108803618|ref|YP_643555.1| glycyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
 gi|108764861|gb|ABG03743.1| glycyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
          Length = 466

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 72/457 (15%), Positives = 144/457 (31%), Gaps = 45/457 (9%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNV-NAIIREE-QNRTGAIEMSVPTLQSADL 79
           R G ++Q S    GI   Y + PLG +   N+     R     R   + +    +    +
Sbjct: 16  RRGFVYQSSEIYGGIRSSYDYGPLGVEMKRNIREEWWRSMVYMRDDVVGIDAAVIMHPKV 75

Query: 80  WVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           W  SG  +++   ++  R + R  +A         +  +       +         +  +
Sbjct: 76  WEASGHVETFNDMLVESRTSGRRYRADHLIEEATGIDAEGMSPEEMTRLIQEDERIKDPV 135

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
               +  P        E       S +        +   +FV++  +     +K     A
Sbjct: 136 DGGRDFAPVRPFNLMFETYTGPVKSPENLAYLRPETAQGIFVNFKNVLQTSRVKVPFGIA 195

Query: 198 ESGPIGGD----------------LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           + G    +                +  EF V   T E       +             ++
Sbjct: 196 QIGKSFRNEITPGNFIFRTREFEQMEMEFFVEPGTDEEWHEYWIEERREWYTRLGIRPEN 255

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +       E+ +     T D+     F    E + ++ R           ++YS      
Sbjct: 256 LRLYEHPKEKLSHYSKRTVDIEYNFPFAGWSELEGIANRTDYDLRRH---SEYSGEKLEY 312

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFK 348
           F  A  + +   +     G  R++ A++  ++  +                    VAP K
Sbjct: 313 FDQAKNRSYIPYVIEPAAGVDRILLALLVDAYHEEEAPNAKGELERRTVLKLHPRVAPTK 372

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            ++  +    +       ++Y  L      +F+DD G  IG ++   D  G P  V V  
Sbjct: 373 AAVFPLTKK-EPVSAVARRLYDDLKG-DYRLFYDDSG-SIGRRYRRQDEAGTPFCVTVDF 429

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + D KV I+ R T  +E + +E V +  +   S +
Sbjct: 430 DTLEDKKVTIRDRDTMEQERIPIEAVRDRLAKLISAS 466


>gi|225548175|ref|ZP_03769460.1| hypothetical protein RUMHYD_00154 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040614|gb|EEG50860.1| hypothetical protein RUMHYD_00154 [Blautia hydrogenotrophica DSM
           10507]
          Length = 464

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 65/442 (14%), Positives = 134/442 (30%), Gaps = 50/442 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKKAWWQKFI----QESPYNVGVDCAILMNPQTWVASGHLGGFSDPL 87

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVM 150
           +   + +++        E+   +       S   +       +  +         +    
Sbjct: 88  MDCKECHER-FRADKLIEDYSAEKGIELEGSVDAWSQEQMMDFIKEHNVPCPTCGKHNFT 146

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP 201
             R+F +       +T +     Y +          F +  R   +     I    +S  
Sbjct: 147 DIRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKLPFGIGQIGKSFR 206

Query: 202 -------------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                            +  EF    DT        K F    + S     D++   +  
Sbjct: 207 NEITPGNFTFRTREFEQMELEFFCEPDTDLEWFAYWKKFCLDWLSSLGLKEDEVRYRDHE 266

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E+ +  Y+  +            E   ++ R              S      F     +
Sbjct: 267 KEELS-FYSKATTDVEFLFPFGWGELWGIADRTDYDLTQHQ---NVSGEDLTYFDDEKKQ 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH--------DQV 360
            +   +    +GA R+V A + S++D + +    +     +    + A          + 
Sbjct: 323 RYIPYVIEPSLGADRMVLAFLCSAYDEEVLDEEKNDVRTVLHFHPVLAPVKIGVLPLSKK 382

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   KIY +LSK   +  +DD G  IG ++   D +G P  V        D  V ++ 
Sbjct: 383 LNEGALKIYEQLSKK-YNCEYDDRG-NIGKRYRRQDEIGTPFCVTYDFDSEEDGSVTVRD 440

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R T  +  + +EE+  Y + +F
Sbjct: 441 RDTMEQVRVKIEELDAYFADKF 462


>gi|171185199|ref|YP_001794118.1| threonyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
 gi|229558458|sp|B1YD09|SYT_THENV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|170934411|gb|ACB39672.1| Threonyl-tRNA synthetase editing domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 609

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 115/354 (32%), Gaps = 41/354 (11%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKD 159
           D  +I           + +  + SYR LPF   ++   +R E       + R R F M D
Sbjct: 278 DTDLILRYAACFQQFAMVKDWVISYRQLPFGMLEVADSYRLEQPGETVLLFRLRRFYMPD 337

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            + F      +     ++  +  R   +LG   + +   +         +++V       
Sbjct: 338 LHIFTKDLAEAMEVTFRLHEAIFREIGKLGRTYVSLYNVTEDFY-KAHRQYLV------- 389

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                          E    +    L  ++      +    + H   + D L   + ++ 
Sbjct: 390 ---------------ELARREGKPILVRVLPGQKYYWVLNVEFH---IIDELGRPREIAT 431

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKG 337
             I+VG+   FG          +   + +  Y  +    I     R + AV ++    + 
Sbjct: 432 FQIDVGNAQRFG--------IKYVDENNQTRYPVIIHTAILGSVERYLYAVFDTLARAEK 483

Query: 338 IIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                 +  +   +   I    +       ++  +    G  V  DD  E +  +   A+
Sbjct: 484 EGKAPRLPTWLSPVQVRIIPITRDNLKYAVEVADKFEAEGIRVDVDDRDETLSKRIRDAE 543

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN--NRPV 448
           +   P   +VGSK  ++  V ++ R  G +  +  E++I           NRP+
Sbjct: 544 VAWVPYICVVGSKEEAEGVVSVRERGGG-QYRVKPEDLIKKIREDVRGYPNRPL 596


>gi|314933795|ref|ZP_07841160.1| histidine--tRNA ligase [Staphylococcus caprae C87]
 gi|313653945|gb|EFS17702.1| histidine--tRNA ligase [Staphylococcus caprae C87]
          Length = 420

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 58/406 (14%), Positives = 115/406 (28%), Gaps = 19/406 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
             ++   + E        E+  P  +S +L+        D   KEM    D+ D+++   
Sbjct: 19  WRHIENKLDELMELYNYKEIRTPIFESTELFARGVGDSTDVVQKEMYTFKDKGDRSLTLR 78

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +        ++   N P   Y     FR E + +    +  +F ++        
Sbjct: 79  PEGTAAVVRSYIEHKMQGNPNQPVKLYYNGPMFRYERKQKGRYRQFNQFGVEA--IGAEN 136

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P         +   Y     +     I    +S        +E +V         FCS  
Sbjct: 137 PSIDAEVLAMVMHIYESFGLKHLKLVINSIGDSES--RKEYNEALVNHFEPVIDTFCSDC 194

Query: 227 FMDFPIPSENTDFDDIISLNSIV-----------EQWTAPYAATSDVHNEKLFDSLPENK 275
                          I      +           +   A Y       ++     + +  
Sbjct: 195 QSRLHTNPMRILDCKIDRDKEAIKTAPRITDYLNDDSKAYYEQVKHHLDDLNIPYVEDPN 254

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            V          F           A T     G+ + +     G     +  A+      
Sbjct: 255 LVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLQLLDGPSETGIGFALSIERLL 314

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                    +   +   + I    +       K+   L K       D +  +I  Q   
Sbjct: 315 LALEEEGIELDIEEKFDLFIVTMGEEADRYAVKLLNDLRKNDVKADKDYLNRKIKGQMKQ 374

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           AD L     +++G + + ++ + IK+  TG  E++ L+++INY   
Sbjct: 375 ADRLNAKYTIVIGDQELENNSIAIKNMTTGESENIQLDQLINYFKK 420


>gi|219684697|ref|ZP_03539640.1| prolyl-tRNA synthetase [Borrelia garinii PBr]
 gi|219672059|gb|EED29113.1| prolyl-tRNA synthetase [Borrelia garinii PBr]
          Length = 488

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 133/415 (32%), Gaps = 65/415 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      + +I+ ++   +G      P L     L  E    + +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIQSILDKKFKESGHENAYFPMLIPYGFLEKEKDHIEGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   +++                                                    
Sbjct: 93  KDAGGESLAEPLVLRP-------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 109 --------TSETIIWNMYSKWIKSYRDLPLKINQWANVVRWEKRTRPFLRTTEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ ++  +   +  +   +     +  +    +            S+ E   
Sbjct: 159 GHTAHATEEEALEETLLILDL-YKRFMEDYLAIPVFCGKKSEKEKFAGAVSTYSI-EALM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+  DGK  +V   S+G+ + R++ A+I    D K
Sbjct: 217 QDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEK 275

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
           G+I P  +AP +I +I I   +        D  + +   L K    V  D D+    G +
Sbjct: 276 GLILPPRIAPIEIIVIPIFKKEDEINKKILDYSDCVVNALKKAEFRVEVDKDVRSSPGFR 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFSN 444
           F+ A+  G P+++ VG   V  + V I  R    +    +SL+ + +       +
Sbjct: 336 FSSAEFKGIPIRIEVGINDVLLNSVTIVRRDKDRKFKYQISLDSLASKVKIELDS 390


>gi|218905598|ref|YP_002453432.1| histidyl-tRNA synthetase [Bacillus cereus AH820]
 gi|218536362|gb|ACK88760.1| histidyl-tRNA synthetase [Bacillus cereus AH820]
          Length = 423

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 13  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 72

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 73  ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 130 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 188

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ +K+ + L     
Sbjct: 189 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDV 248

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 249 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVKEIGGPEMPGIGFAM 308

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 309 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLAVEKDYLDRKM 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 369 KAQFKSADRLKAKFVAVLGEDELDKGIINLKDMATGEQEEVALDVFASYVAEKL 422


>gi|115491451|ref|XP_001210353.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114197213|gb|EAU38913.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 564

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 54/193 (27%), Positives = 97/193 (50%), Gaps = 15/193 (7%)

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK-------GADGKDHYVQM 314
           VH+        +    +   IE+GH F+ GT+YS  + A           ++ +   ++M
Sbjct: 374 VHDGDKCTKCGQGHLKTHTAIELGHTFHLGTRYSEVLQACVMVDRATAGKSEDQTVPMEM 433

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G +GIG  R++ AV +S  D KG+ WP ++AP+++ ++  K  +       EKIY  L+ 
Sbjct: 434 GCHGIGVSRMITAVADSLADSKGLNWPRAMAPYEVIVVPTKGLEAD----AEKIYDVLAS 489

Query: 375 VG---CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDMS 430
                 D   DD  +Q+G +   ADL+G+P+ V+VG  +     VE++ R    +RE++ 
Sbjct: 490 NPTSPFDTILDDRDKQMGWKLGDADLIGYPVIVVVGKGWKKQQTVEVQCRRLNNLRENVP 549

Query: 431 LEEVINYASHRFS 443
           LE +  + +   +
Sbjct: 550 LERLPEFVNSLLA 562



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 75/272 (27%), Positives = 124/272 (45%), Gaps = 28/272 (10%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           L++R G + Q   GI+  LPLG +  D +  +I +                         
Sbjct: 29  LLIRGGFLRQAYSGIFHMLPLGLRVQDKLERLIDKHMRLLDMQ----------------- 71

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
                   + R  DR +   +  PTHEE +T +  S  KSYR+LP   YQI  K+RDE R
Sbjct: 72  --------VFRFLDRKESRFLLAPTHEEEITTLVGSLTKSYRDLPLRVYQISRKYRDEPR 123

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           PR G++R REF+MKD Y+FD + E +  +Y ++  +Y R+F+ L +  +   A+SG +GG
Sbjct: 124 PRQGLLRGREFIMKDLYTFDYSMEEALKTYGQVRAAYTRLFNELKIPYLVAVADSGNMGG 183

Query: 205 DLSHEFIVLADTGETQVF-CSKDFMDFPIPSENTDFDDIISLNSIVEQW--TAPYAATSD 261
           +LSHEF   +  GE  V  C+     +     +     + +  +  E +   A  A  + 
Sbjct: 184 NLSHEFHFPSSKGEDTVITCTSCDSVYNEELADGQSHGLENNTTQSEGFNTGAVSAEATP 243

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
             +  ++ ++  +KR   R           ++
Sbjct: 244 TISNDIWMAISRDKRTLLRAWYPKFSMQGDSQ 275


>gi|239627750|ref|ZP_04670781.1| glycyl-tRNA synthetase [Clostridiales bacterium 1_7_47_FAA]
 gi|239517896|gb|EEQ57762.1| glycyl-tRNA synthetase [Clostridiales bacterium 1_7_47FAA]
          Length = 462

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 64/439 (14%), Positives = 138/439 (31%), Gaps = 46/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++        + +    L +   WV SG    +   ++   
Sbjct: 32  WDYGNLGVELKNNVKKAWWQKFVMESPYNVGVDCAILMNPQTWVASGHLGGFSDPLMDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              ++        E+   +       S   +       Y                   R+
Sbjct: 92  QCKER-FRADKLIEDFNDEHGIKIEGSVDAWSQEQMKQYIDDNNICCPSCGAHDFTEIRQ 150

Query: 155 FLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           F +       +T +     Y        +FV++  +      K     A+ G    +   
Sbjct: 151 FNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRNEIT 210

Query: 209 ----------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                           EF    DT        K +    + +     D++ + +   E+ 
Sbjct: 211 PGNFTFRTREFEQMELEFFCKPDTDLEWFAYWKQYCIDWLKALGIKEDEMRARDHEQEEL 270

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           +  Y+  +            E   ++ R              S    + F     + +  
Sbjct: 271 S-FYSKATTDLEFLFPFGWGELWGIADRTDYDLTQHQ---NVSGQDMSYFDDEAKEKYIP 326

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRD 363
            +    +GA RV  A + +++D + I          +  ++AP K+ ++ +        +
Sbjct: 327 YVIEPSLGADRVTLAFLCAAYDEEEIGEGDVRTVLHFHPALAPVKVGVLPLSKK---LNE 383

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK+Y  LSK   +  +DD G  IG ++   D +G P  +        D  V ++ R T
Sbjct: 384 GAEKVYTELSKY-FNCEFDDRG-NIGKRYRRQDEIGTPFCITYDFDSEEDHAVTVRDRDT 441

Query: 424 GIREDMSLEEVINYASHRF 442
             +  + + E+ +Y + +F
Sbjct: 442 MEQVRIPISELKDYFADKF 460


>gi|229086967|ref|ZP_04219124.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock3-44]
 gi|228696343|gb|EEL49171.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock3-44]
          Length = 423

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 126/415 (30%), Gaps = 20/415 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 13  LPGSVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 72

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 73  ERSLTLRPEGTAPVVRSYVENKMYGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF---IVLAD 215
                   P             Y  +  +     +    +          E         
Sbjct: 130 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGD--AASRQAHREALIAHFEPR 187

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--- 272
            GE    C       P+   +   D    L +     T      S  + EK+ + L    
Sbjct: 188 IGEFCSDCQSRLEKNPLRILDCKKDRGHELMNAAPSITEYLNEESTAYYEKVQELLTMMD 247

Query: 273 ---ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              E      RG++     +F   ++     + T     G+ + +     G     +  A
Sbjct: 248 VPFEKDLNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFA 307

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +               +         + A  +  +D   K+   L K G  V  D +  +
Sbjct: 308 MSIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRK 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 368 MKAQFKSADRLNAKFVAVLGEDELDKGIINLKSMATGEQEEVALDVFASYVAEKL 422


>gi|213024072|ref|ZP_03338519.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
          Length = 60

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 42/60 (70%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          MR S+Y L  L+E P DAE+ SH+LMLR GMI + + G+Y+WLP G + L  V  I+REE
Sbjct: 1  MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLPTGLRVLKKVENIVREE 60


>gi|312140272|ref|YP_004007608.1| glycine-tRNA ligase glys [Rhodococcus equi 103S]
 gi|311889611|emb|CBH48928.1| glycine-tRNA ligase GlyS [Rhodococcus equi 103S]
          Length = 463

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 57/437 (13%), Positives = 125/437 (28%), Gaps = 44/437 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    +    +W  SG  + +   ++   
Sbjct: 34  WDYGPLGVELKENIKKQWWRNMVTSREDVVGLDSSVILPRQVWEASGHVEVFTDPLVECL 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
           + + +        E            +             K +  E +   G++++    
Sbjct: 94  NCHKRHRQ-DHLQEAYAEKHKLDDPDAVAMTEIVCPDCGTKGQWTEPKAFSGLLKTYLGP 152

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESGPI 202
           +            +       F + L                  R  +        +   
Sbjct: 153 VDSETGLHYLRPETAQGIFVNFANVLTTSRKKPPFGIGQIGKSFRNEITPGNFIFRTREF 212

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                  F+   +  E   +     MD+       + D++       E+ +     T D+
Sbjct: 213 EQMEMEFFVKPGEDEEWHQYWIDYRMDWYT-GLGINKDNLRLYEHAQEKLSHYSKRTVDI 271

Query: 263 HNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                F      E + V+ R            K S    + F    G+ +   +     G
Sbjct: 272 EYRFQFQGSEWGELEGVANRTDYDLATH---AKASGTDLSYFDQTSGERYTPYVIEPAAG 328

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK---------------AHDQVCRDAC 365
             R + A +    D        +          +K               + +       
Sbjct: 329 LTRSLMAFLV---DAYTEDEAPNAKGGVDKRTVLKLDRRLAPVKAAVLPLSRNADLSPKA 385

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + +   L +   ++ +DD G  IG ++   D +G P  + V    + D  V I+ R T  
Sbjct: 386 KDLATTLRQHW-NIEFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLEDQAVTIRERDTMA 443

Query: 426 REDMSLEEVINYASHRF 442
           +E +SL++V  Y + R 
Sbjct: 444 QERVSLDQVEGYLAQRL 460


>gi|330683923|gb|EGG95691.1| histidine--tRNA ligase [Staphylococcus epidermidis VCU121]
          Length = 420

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 55/406 (13%), Positives = 114/406 (28%), Gaps = 19/406 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   + +        E+  P  +S +L+        D   KEM    D+ D+++   
Sbjct: 19  WRYIENKLDQLMEIYNYQEIRTPIFESTELFARGVGDSTDVVQKEMYTFKDKGDRSLTLR 78

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +        ++   N P   Y     FR E + +    +  +F ++        
Sbjct: 79  PEGTASVVRSYIEHKMQGNPNQPVKLYYNGPMFRYERKQKGRYRQFNQFGVEA--IGSEN 136

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P         +   Y     +     I    +S        ++ +V         FC   
Sbjct: 137 PSIDAEILAMVMHIYQSFGLKHLKLVINSIGDSDS--RKEYNKALVKHFEPVIDNFCQDC 194

Query: 227 FMDFPIPSENTDFDDIISLNSIV-----------EQWTAPYAATSDVHNEKLFDSLPENK 275
                          +      V           E   A Y       ++     + +  
Sbjct: 195 QSRLHTNPMRILDCKVDRDKEAVKNAPRITDFLNEDSKAYYEQVKQHLDDLEIPYVEDPN 254

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            V          F           A T     G+ + +     G     +  A+      
Sbjct: 255 LVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSQTGIGFALSIERLL 314

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                    +       + I    +       K+   L K G     D +  +I  Q   
Sbjct: 315 LALEEEGIELDIKNDFDLFIVTMGEKADRYAVKLLNELRKNGVKADKDYLNRKIKGQMKQ 374

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           AD L     +++G + + +++++IK+  TG  E + L+++++Y   
Sbjct: 375 ADRLNANYTIVIGDQELENNQIDIKNMETGESESIQLDQIVDYFHK 420


>gi|33636681|gb|AAQ23638.1| AT04665p [Drosophila melanogaster]
          Length = 335

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 99/335 (29%), Positives = 151/335 (45%), Gaps = 39/335 (11%)

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             SYR LP   +QI  KFRDEL+ RFG+MR++EFLMKD YSFD++ E +  +Y  +  +Y
Sbjct: 7   PISYRQLPLRLFQIGPKFRDELKTRFGLMRAKEFLMKDMYSFDVSEETAMETYTVVNAAY 66

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            R+F +L +  + + A +G +GG +SHE+  ++  GE  +                    
Sbjct: 67  DRLFKQLEVPFVKVNAATGIMGGSVSHEYHYVSPVGEDNLLQCSSC-------------- 112

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                            +  V       S   +     RG+EV H F  G KYS P+ AT
Sbjct: 113 ------------GFAGNSEVVKAPASCPSCNSSDLKEVRGVEVAHTFLLGDKYSKPLGAT 160

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F    GK   + MG YGIG  RV+AA +E       + WP  +AP+ + LI  K   +  
Sbjct: 161 FLNTTGKPQSLVMGCYGIGITRVIAAALEVLSSDHELRWPKLLAPYDVCLIGPKQGSKEQ 220

Query: 362 RDACEKIYARLSKVGC-------DVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKF--V 411
            +  E I   L  +         ++  DD  E  IG +   A  LG PL ++VG+K   +
Sbjct: 221 PE-AEVIENELL-LNVGEICGHQELLHDDRKELTIGKRLLEAKRLGHPLTIVVGAKSVRL 278

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              K+E+     G   ++   E +   +    + +
Sbjct: 279 DSPKLEVHT-SKGETYELDFSETLKLVAEHSQHKK 312


>gi|134076914|emb|CAK45323.1| unnamed protein product [Aspergillus niger]
          Length = 497

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 95/425 (22%), Positives = 156/425 (36%), Gaps = 56/425 (13%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
            LPLG +  D +  +I +     GA ++S+ +L + +LW +SGR    G E+ R  DR +
Sbjct: 1   MLPLGLRVQDKLERLIDKHMRTVGASKVSLSSLSAQELWEQSGRLKE-GSEIFRFQDRKE 59

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
              +  PTHEE +T +     KSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y
Sbjct: 60  SRFLLAPTHEEEITTLVGHLTKSYRDLPVRVYQISRKYRDEQRPRQGLLRGREFIMKDLY 119

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +FD   E +  +Y  +  +Y  +F  L +  +   A+SG +GG LSHEF   ++ GE  V
Sbjct: 120 TFDYNAENALKTYTAVKKAYTELFDELKIPYLVAAADSGNMGGSLSHEFHFASNKGEDTV 179

Query: 222 F----CSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDSLPENKR 276
                C   + +     +  + DD  +       + T  Y            +      +
Sbjct: 180 XSCSSCDSVYNEELADGKAHNVDDQQTRIGHASGFDTGEYTLKDPSQPPAEREVNSHAVK 239

Query: 277 VSAR--GIEVGHIFYFG-TKYSLPMSAT--------FKGADGKDHYVQMGSYGIGAMRVV 325
             A+  GI++         +++  + +                             +  +
Sbjct: 240 SIAKAAGIDLDISIENPLEQWAKHIQSEEASGQRPRVLDVYDSYVRAYKRPPLTDTLDGI 299

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD--D 383
              +E     +  I               KA           +             D  D
Sbjct: 300 NRAVEGWLTFQNSIASPEPTTISTLYGCTKATSARNAAKASVVVD-------RAHLDPGD 352

Query: 384 MGEQ---------------IGS--QF-----AVADLLG-------FPL-QVIVGSKFVSD 413
                              IG           +AD  G        P   ++V +K + +
Sbjct: 353 RSSSSQKDQLVPMQMGCHGIGVSRMISAVADNLADSKGLNWPRAIAPYEVIVVPAKGMEE 412

Query: 414 SKVEI 418
             V+I
Sbjct: 413 EAVQI 417



 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 76/137 (55%), Gaps = 7/137 (5%)

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            +QMG +GIG  R+++AV ++  D KG+ WP ++AP+++ ++  K  ++       +IY 
Sbjct: 364 PMQMGCHGIGVSRMISAVADNLADSKGLNWPRAIAPYEVIVVPAKGMEEE----AVQIYD 419

Query: 371 RLSKVG---CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            L+       DV  DD  +Q+G +   ADL+G+P+ V+VG  +     +E++ R   +RE
Sbjct: 420 ALTSEPTTALDVILDDRDKQMGWKLGDADLIGYPVIVVVGKGWKKQRTLEVQCRRLEVRE 479

Query: 428 DMSLEEVINYASHRFSN 444
           D++LE +  +       
Sbjct: 480 DVALEALPEFVGSLLEK 496


>gi|254167669|ref|ZP_04874520.1| threonyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289596979|ref|YP_003483675.1| threonyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623478|gb|EDY36042.1| threonyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289534766|gb|ADD09113.1| threonyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 612

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 66/437 (15%), Positives = 143/437 (32%), Gaps = 54/437 (12%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYS----WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           EI  H  ++R+  +  +  G  S    + P G+     +   +  +    GA+++  P +
Sbjct: 192 EIPPHVKLMRSLELADYEPGSDSGNMRYYPKGKLIKALIEDYVENKVIDYGAMQVETPIM 251

Query: 75  QSA---DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
                  L     R+ +    +L   D+                 +      SYRNLP  
Sbjct: 252 YDFNHPSLKSYLNRFPARQYIVLSGKDK----YFLRFAACFGQFLMMHDATISYRNLPLR 307

Query: 132 FYQIQLKF--RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
            Y++      R++     G+ R R F M D ++       +   + + +   + +    G
Sbjct: 308 LYEMAKYAFRREQKGELSGLRRLRAFTMPDMHTLAADMPQAMEEFKRQYEMAIEVLKDFG 367

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
           L                        + G+ +V   +   DF   +++   + +  +N  V
Sbjct: 368 L------------------------ELGDYEVAI-RFTRDFYEENKDFIRELVKLVNRPV 402

Query: 250 --EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             + W   +            DSL +   +S   I+V        + +     T+   +G
Sbjct: 403 LIQMWDERFFYFVLKFEFNFVDSLNKAAALSTVQIDV--------ENAERYGITYYDENG 454

Query: 308 KDHYVQMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN--IKAHDQVCRD 363
            + Y  +          R++ A++E +     +     +  +        I   D     
Sbjct: 455 NERYPYILHCSPSGAVERILYAMLEKADMDAKMGKKPKLPVWLSPTQVRIIPVKDDFIGC 514

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           + +++          V  DD    +  +   A+    P  V++G K      + ++ R  
Sbjct: 515 SIQEM-DYFRSEEFRVDIDDRDLSVSRKIRDAEKEWIPYIVVIGEKEKEKDILTVRIRGG 573

Query: 424 GIREDMSLEEVINYASH 440
           G++E M  EE++     
Sbjct: 574 GVKE-MKREELLALLKK 589


>gi|148377533|ref|YP_001256409.1| glycyl-tRNA synthetase [Mycoplasma agalactiae PG2]
 gi|148291579|emb|CAL58965.1| Glycyl tRNA synthetase (Glycine tRNA ligase) [Mycoplasma agalactiae
           PG2]
          Length = 458

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 74/460 (16%), Positives = 153/460 (33%), Gaps = 44/460 (9%)

Query: 18  AEIASHKLMLRT-GMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNRTGAIE-- 68
           A I +H   L+  G + Q S    G+   + + PLG    +N+  + ++E       E  
Sbjct: 9   ASIINH---LKATGFVFQGSEIYGGLSNTWDYGPLGSLLKENIKDLWKKEFI---YSEHN 62

Query: 69  ---MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR----SH 121
              +    L +  +WV SG   ++   ++       +        E V + I        
Sbjct: 63  NFLIDSKILMNPKVWVTSGHVSNFNDPLIENKVNGKRYRADKIIQEIVPSLIPEAMTFKQ 122

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +  Y     T Y        E+R    +  +++ +++   S       +       F + 
Sbjct: 123 MHEYLVKNVTEYDNSKCNWSEIRKFNLMFETKQGIIEGEKSLIYLRPETAQGIFVNFKNV 182

Query: 182 LRIFH--------RLGLKSIPMRAESGPIGGDLSHEFI---VLADTGETQVFCSKDFMDF 230
           LR           ++G            I      E +   V  D  ++++  +K     
Sbjct: 183 LRSTRAKLPIGIGQVGKSFRNEVTPGNFIFRTREFEQMELEVFHDPKDSELIFNKYLNKC 242

Query: 231 PIPSENT-DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
              +      D+ I + +  +   + Y++ +            E   V+ R         
Sbjct: 243 KTFANLVGIKDENIRIRAHEQDELSHYSSATSDIEYLFPFGWGELLGVANRTDFDLKAHM 302

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD------GKGIIWPDS 343
             T  SL     F           +    +G  R++ A++  S+D          I    
Sbjct: 303 QATGESLEY---FDPVTNSKLIPYVIEPSMGLDRLMLALLIDSYDEELVSENDTRIVLKV 359

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
                     I    +   +  E+IY +L K+   + +DD G  IG ++   D +G P  
Sbjct: 360 PNGVAPYKFAILPLVKKLNEKAEEIYKQLLKLNIPITYDDAG-SIGKRYRRQDSIGTPYC 418

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + +    ++D  + I++R +  +E +S+  +  +A   F 
Sbjct: 419 ITIDYDSLNDECITIRNRDSMSQERISISNLYEFAQKTFK 458


>gi|253580799|ref|ZP_04858062.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847869|gb|EES75836.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 475

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/438 (14%), Positives = 134/438 (30%), Gaps = 50/438 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG   S+   +
Sbjct: 47  WDYGNLGVELKNNVKRAWWQKFI----QESPYNVGVDCAILMNPQTWVASGHLGSFSDPL 102

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVM 150
           +   + +++        E+   +       S   +       +            +    
Sbjct: 103 MDCKECHER-FRADKIIEDFSQENGIELESSVDGWSQEEMMNFIKDHNVPCPTCGKHNFT 161

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP 201
             R+F +       +T +     Y +          F +  R   +     I    +S  
Sbjct: 162 DIRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFR 221

Query: 202 -------------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                            +  EF    DT        K+F    + S     +++   +  
Sbjct: 222 NEITPGNFTFRTREFEQMELEFFCEPDTDLEWFAYWKNFCLNWLHSLGLKDEEVRYRDHD 281

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E+ +  Y+  +            E   ++ R              S      F     +
Sbjct: 282 AEELS-FYSKATTDVEFLFPFGWGELWGIADRTDYDLTQHQ---NVSGQDLTYFDDEKKQ 337

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN--------IKAHDQV 360
            +   +    +GA RVV A + S++D + +    +     +            +    + 
Sbjct: 338 KYIPYVIEPSLGADRVVLAFLCSAYDEEVLDAEKNDVRTVLHFHPALAPVKIGVLPLSKK 397

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  EKIY +LSK   +  +DD G  IG ++   D +G P  V    +  +D  V I+ 
Sbjct: 398 LNEGAEKIYQQLSKK-YNCEYDDRG-NIGKRYRRQDEIGTPFCVTYDFESENDGAVTIRD 455

Query: 421 RLTGIREDMSLEEVINYA 438
           R T  +  + ++E+  Y 
Sbjct: 456 RDTMEQVRVKIDELDAYF 473


>gi|156839714|ref|XP_001643545.1| hypothetical protein Kpol_1008p26 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114160|gb|EDO15687.1| hypothetical protein Kpol_1008p26 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 674

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/420 (15%), Positives = 124/420 (29%), Gaps = 67/420 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +      +    G      P   S+  L  E    + +  E+  
Sbjct: 201 SGCYILRPPSYAIWEAIQKYFDAKIKGLGVQNAYFPMFVSSRVLEKEKDHIEGFAPEV-- 258

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                                                              +     +  
Sbjct: 259 --------------------------------------------------AWVTKAGQSE 268

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLA 214
           L +       +       Y K   SY  +  +L   +  +R E   P     + EF+   
Sbjct: 269 LEEPIAIRPTSETVMYPYYAKWIQSYRDLPLKLNQWNSVVRWEFKHPQPFLRTREFL--W 326

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G T     K+  +  +   +        L   V                    ++   
Sbjct: 327 QEGHTVFLNEKEAQEEVLQILDFYAGVYEEL-LAVPVVKGKKTEKEKFAGGDFTTTVEGY 385

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIG-AMRVVAAVIESS 332
              + RGI+     + G  +S   + + +   G DH  +       G + RV+  ++   
Sbjct: 386 IPQTGRGIQGATSHHLGQNFSKMFNLSVENPLGPDHPKIFAYQNSWGLSTRVIGVMVMIH 445

Query: 333 HDGKGIIWPDSVAPFKISLINI---KAHDQVCR----DACEKIYARLSKVGCDVFWD-DM 384
            D KG++ P  V+ F+  ++ +   K   +  R    +A   + +RL K     F D + 
Sbjct: 446 SDNKGLVIPPRVSQFQAVVVPVGITKKTSEEQRKKIHEAARDVESRLKKSDVRAFGDYND 505

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               G +FA  +L G PL+V +G K + +S+V +  R    +  + L E+ +        
Sbjct: 506 NYTPGWKFAQYELKGIPLRVEMGPKDIEESQVTVVRRNDSRKYTVKLSELESRIPEIMDE 565


>gi|88855020|ref|ZP_01129685.1| glycyl-tRNA synthetase [marine actinobacterium PHSC20C1]
 gi|88815548|gb|EAR25405.1| glycyl-tRNA synthetase [marine actinobacterium PHSC20C1]
          Length = 461

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 71/466 (15%), Positives = 140/466 (30%), Gaps = 49/466 (10%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIRE--EQNRTG 65
           NP DA I    L  R G + Q      G    + + PLG    +N+     +   Q R  
Sbjct: 5   NPLDAVI---NLAKRRGFVFQSGEIYGGSRSAWDYGPLGMALKENIKKQWWQTIVQGRDD 61

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            + +    +    +W  SG  + +   ++      +  +A      +EE       + + 
Sbjct: 62  VVGIDSAVILPRKVWEASGHVEVFSDPLVESLHTHKRYRADHLLEAYEEKHGHPPVNGLA 121

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
             R+              E +   G++++    + +          +       F + + 
Sbjct: 122 DIRDPDTGQPGSWT----EPQNFSGLLKTFLGPVDNEEGMHYLRPETAQGIFTNFANVMG 177

Query: 184 IFH--------RLGLKSIPMRAESGPIGG-----DLSHEFIVLADTGETQVFCSKDFMDF 230
                      ++G            I        +  EF V   T E       D    
Sbjct: 178 AARMKPPFGIGQVGKSFRNEITPGNFIFRTREFEQMEMEFFVEPGTDEEWHQYWIDESMK 237

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                    +++       E+ +     T DV     F      + +   GI     F  
Sbjct: 238 WYTDLGIKPENLRFYEHAQEKLSHYSKRTVDVEYRFRFAGSEWGELM---GIANRTDFDL 294

Query: 291 GTK-YSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD------ 342
            T   +     ++      +     +     G  R + A +  ++               
Sbjct: 295 RTHSEASGADLSYFDQAKDERWTPYVIEPAFGLTRALMAFLIDAYAEDEAPNAKGGVDKR 354

Query: 343 SVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +V      L  +K      + ++        + A L K   +V +DD G  IG ++   D
Sbjct: 355 TVLRLDRRLSPVKVAVLPLSRNERLSPLARSVAADLRKFW-NVDFDDAGA-IGRRYRRQD 412

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +G P  V +    + D+ V ++ R T  ++ M LEE+  Y +   
Sbjct: 413 EIGTPFCVTIDFDSLDDNAVTVRERDTMEQKRMPLEELRGYLAQEL 458


>gi|313906170|ref|ZP_07839518.1| glycyl-tRNA synthetase [Eubacterium cellulosolvens 6]
 gi|313469009|gb|EFR64363.1| glycyl-tRNA synthetase [Eubacterium cellulosolvens 6]
          Length = 465

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/455 (14%), Positives = 146/455 (32%), Gaps = 47/455 (10%)

Query: 30  GMI---HQHSKGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWV 81
           G I    +   G+   + + PLG +  +NV     ++  +     +      L +   WV
Sbjct: 16  GFIYPGSEIYGGLANTWDYGPLGVELKNNVKKAWWKKFVQDNKYNVGVDCAILMNPQTWV 75

Query: 82  ESGRYDSYGKEMLRLADRNDK---AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            SG   S+   ++   + +++     +      E   ++  +    + N     +  + +
Sbjct: 76  ASGHIGSFSDPLMDCKECHERFRADKLIEDFCAENGIELENNSCDGWSNEQMKAFIDEHQ 135

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKS 192
                         R+F +       +T +     Y        +FV++  +      K 
Sbjct: 136 IPCPSCGSHNFTDIRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKV 195

Query: 193 IPMRAESGPIGGDLSH----------------EFIVLADTGETQVFCSKDFMDFPIPSEN 236
               A+ G    +                   EF     T        + F    + S  
Sbjct: 196 PFGIAQIGKSFRNEITPGNFTFRTREFEQMELEFFCEPGTDLEWFQYWRTFCHNWLTSLG 255

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              +++   +   E+  A Y+  +            E   V+ R            + S 
Sbjct: 256 LKDEELRLRDHAPEEL-AFYSKATTDFEFLFPFGWGELWGVADRTDYDLGRHQ---EVSG 311

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN--- 353
                F  +  + +   +    +GA RVV A + +++D + +    +     +       
Sbjct: 312 QDMTYFDDSKNEKYIPYVIEPSLGADRVVLAFLCAAYDEEVLDAEKNDVRTVMHFHPALA 371

Query: 354 -----IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
                +    +   ++ EK++  LS    +  +DD G  IG ++   D +G P  +    
Sbjct: 372 PVKAAVLPLSKKLGESAEKVFDMLSSK-FNCEYDDRGA-IGKRYRRQDEIGTPFCITYDF 429

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               D  V I++R T  +E + +E++  +   +F 
Sbjct: 430 DSEEDHAVTIRNRDTMEQERVKIEDLEKWFEGKFD 464


>gi|166032677|ref|ZP_02235506.1| hypothetical protein DORFOR_02392 [Dorea formicigenerans ATCC
           27755]
 gi|166027034|gb|EDR45791.1| hypothetical protein DORFOR_02392 [Dorea formicigenerans ATCC
           27755]
          Length = 487

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/445 (14%), Positives = 139/445 (31%), Gaps = 55/445 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   W+ SG    +   +
Sbjct: 54  WDYGNLGVELKNNVKKAWWQKFI----QESPYNVGVDCAILMNPQTWIASGHLGGFSDPL 109

Query: 94  LRLADRNDK--AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +   + +++  A      +           I  + +     +  +         +     
Sbjct: 110 MDCKECHERFRADKIIEDYAHEHGIEIGDSIDGWSHEQMENFIKENNVPCPTCGKHDFTE 169

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP- 201
            REF +       +T +     Y +          F +  R   +     I    +S   
Sbjct: 170 IREFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRN 229

Query: 202 ------------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                           +  EF    DT        K F    + +     +++   +   
Sbjct: 230 EITPGNFTFRTREFEQMELEFFCEPDTDLEWFAYWKKFCLDWLHTLGLKDEEVRYRDHDK 289

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E+ +  Y+  +            E   ++ R              S      F     + 
Sbjct: 290 EELS-FYSKATTDIEFLFPFGWGELWGIADRTDYDLTQH---MNVSKQDLTYFDDEKKEK 345

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIKAH 357
           +   +    +GA RVV A + +++D + I             +  ++AP KI ++ +   
Sbjct: 346 YTPYVIEPSLGADRVVLAFLCAAYDEENIGTEDKPDTRTVLHFHPALAPVKIGILPLSKK 405

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                +  EK+YA+L     +  +DD G  IG ++   D +G P  V        D  V 
Sbjct: 406 ---LNEGAEKVYAQL-AKKYNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFDSEEDGAVT 460

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           ++ R T  +E + +E++  Y   +F
Sbjct: 461 VRDRDTMEQERIKIEDLDAYFEKKF 485


>gi|309802149|ref|ZP_07696258.1| glycine--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
 gi|308221229|gb|EFO77532.1| glycine--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
          Length = 491

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 135/439 (30%), Gaps = 42/439 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +    +WV SG    +     E L
Sbjct: 33  WDYGPLGVALKDNIKREWWRSMVVTRGDVVGVDTSIILPPAVWVASGHVSVFNDPLIECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R+    +     E+    +  + +K                  E R    ++R+  
Sbjct: 93  NCHKRHRADKLEESYAEKHGDKLPENGLKDIVCPDCGTRGNWT----EPRDFNMMLRTHL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +             +G            I    
Sbjct: 149 GPVEDENSLHYLRPETAQGIFVDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTR 208

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E       D             +++       E+       T D
Sbjct: 209 EFEQMEMEFFVAPGTDEEWHQYWIDARTQWYIDLGVKPENLRHYEHPKEKLAHYSKRTVD 268

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  +  F      +     G+     F      K+S    + F  A G+ +   +     
Sbjct: 269 IEYKFGFQGSDWGELE---GVANRTDFDLSAHAKHSGEDLSYFNQATGEKYVPYVIEPAA 325

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++D                      +AP K +++ +    ++     +
Sbjct: 326 GLTRSLMAFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQS-VAQ 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + A L +    + +D+ G  IG ++   D +G PL V V    + D  V I+ R T  +
Sbjct: 385 NLAADLRQHDWMIDYDEAGA-IGRRYRREDEIGTPLCVTVDFDTLDDQAVTIRERDTMQQ 443

Query: 427 EDMSLEEVINYASHRFSNN 445
           E ++L++V +Y + R    
Sbjct: 444 ERVALDKVADYVAARIGEK 462


>gi|167037771|ref|YP_001665349.1| glycyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|167039989|ref|YP_001662974.1| glycyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|256751965|ref|ZP_05492835.1| glycyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914079|ref|ZP_07131395.1| glycyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307724688|ref|YP_003904439.1| glycyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|320116186|ref|YP_004186345.1| glycyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166854229|gb|ABY92638.1| glycyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|166856605|gb|ABY95013.1| glycyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256749170|gb|EEU62204.1| glycyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889014|gb|EFK84160.1| glycyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307581749|gb|ADN55148.1| glycyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|319929277|gb|ADV79962.1| glycyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 462

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/444 (13%), Positives = 137/444 (30%), Gaps = 56/444 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+  +  +   +     +      L + ++WV SG   S+   ++   
Sbjct: 34  WDYGPLGVELKNNIKRMWWKRFIQQSPYNVGIDSAILMNPEVWVASGHVSSFSDPLMDCK 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +   +        + +        I+ + N     +  + K              R+F +
Sbjct: 94  ECKSRFRADQLIEDYIKEKGLNISIEGWTNEQMMEFIKEHKVSCPKCGAHNFTDIRKFNL 153

Query: 158 KDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRAESG 200
                  +T +     Y                             ++G           
Sbjct: 154 MFKTYQGVTEDSKSEVYLRPETAQGIFVNFKNVQRTTRKKIPFGIGQIGKSFRNEITPGN 213

Query: 201 PIGGDLSHEFIV---LADTGE-------TQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            I      E +        GE        + +C    ++F +  EN  F D        +
Sbjct: 214 FIFRTREFEQMELEFFCKPGEDMEWFSYWRKYCMDWLLEFGLKEENLRFRD------HKK 267

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGA-DGK 308
           +  + Y+  +            E   ++ R       F          +  ++     G+
Sbjct: 268 EELSHYSTATTDIEYNFPFGWGELWGIANR-----TDFDLRQHMEHSGVDLSYMDPVTGE 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW---------PDSVAPFKISLINIKAHDQ 359
            +        +G  R++ A +  +++ + +             ++AP K +++ +     
Sbjct: 323 KYIPYCIEPSVGVDRLMLAFLIDAYEEEELEDGETRVVLRLHPALAPIKAAVLPLSKK-- 380

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   K+Y +L      V +D+ G  IG ++   D +G P  +       +D  V I+
Sbjct: 381 -LSENAYKLYDQLRNK-FVVDYDETG-SIGKRYRRQDEIGTPFCITYDFDSENDHCVTIR 437

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R T  +  + +EEV  Y   R +
Sbjct: 438 DRDTMQQVRIKIEEVEKYLEERLN 461


>gi|325193197|emb|CCA27545.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 469

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/445 (14%), Positives = 144/445 (32%), Gaps = 46/445 (10%)

Query: 28  RTGMI---HQHSKGI---YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADL 79
           R G I    +   G+   + + PLG     N+ +    E  Q R          L  +D+
Sbjct: 19  RRGFIFPGSELYGGLANTFDYGPLGTLMKHNIQSCWSREFIQKRFNCFAFDSSILLHSDV 78

Query: 80  WVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
           W  SG  DS+   M    +     R D+ +      E           K+         Q
Sbjct: 79  WKASGHADSFTDPMSVCKECNARIRVDQLLSQKLGREWSTPLDITEFDKALERYNVACPQ 138

Query: 135 IQLKFRDELRPRFGVMRSREF---------------LMKDAYSFDLTPEGSKHSYNKMFV 179
                  +    F ++                      + AY      + S  +     +
Sbjct: 139 CAKTHCFQSTKHFNLLFRTNMGATDETCEWINLRPETAQGAYINFANVQSSMRAKLPFGI 198

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             +    R  +        +          F   +D+ E   + + + M F     +   
Sbjct: 199 GQIGKSFRNEISPGQFLFRTREFEQMELQFFTFPSDSDEWMQYWTNECMQFLTT--HGIN 256

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
              I L +  ++  A YA  +            E   ++ R I+           +   +
Sbjct: 257 QGNIRLRAHDQEELAHYARATTDIEFHYPFGWKELWGIANR-IDSDL---LRHMQASGKN 312

Query: 300 ATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKIS 350
             +     +      +    +G  R++ A++  ++  + +           + +AP++++
Sbjct: 313 LHYFDPVTQKELVPHIIEPALGLGRLMLAMLVDAYQEQVVLGRKRTLLRLHEEIAPYRLA 372

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ +   D       E +Y  L      V +D  G  IG ++   D +G PL + V  + 
Sbjct: 373 VLPLLKKDP-LMHLAEDLYNTL-ATKLCVDYDIAG-SIGRRYRRQDEIGTPLCITVDFET 429

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVI 435
           + D+ V ++ R +  ++ +S+++++
Sbjct: 430 LDDNCVTVRDRDSMEQKRISIDKLL 454


>gi|145608824|ref|XP_369830.2| hypothetical protein MGG_06345 [Magnaporthe oryzae 70-15]
 gi|145016254|gb|EDK00744.1| hypothetical protein MGG_06345 [Magnaporthe oryzae 70-15]
          Length = 617

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 85/361 (23%), Positives = 143/361 (39%), Gaps = 33/361 (9%)

Query: 19  EIAS---HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
              S   H+ ++R G + Q + GI+  +PLG +  D +  +I +     GA  +++ TL 
Sbjct: 36  RKLSEDAHEKLVRAGYLRQANAGIFHLMPLGYRVQDKIMKLIEKHMQSIGASRLALATLS 95

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           S  +W +SGR++                       EE +T + +  + SY+ LP   YQI
Sbjct: 96  SPGIWAKSGRFEK-------------------AMTEEEITTLVKHTLSSYKQLPARLYQI 136

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
             KFRDE+RPR G++R REF+MKD Y+FDL+   +  +Y ++  +Y RIF  L L  +  
Sbjct: 137 TPKFRDEMRPRKGLLRGREFMMKDLYTFDLSVNTALQTYEQVRAAYDRIFSELRLPVMVA 196

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            A SG IGGDLSHE+ +    GE  V              NT+            +  A 
Sbjct: 197 EASSGDIGGDLSHEYHLPTSEGEDDVISCSRCHYMA----NTEVAVSKLQPHNNPKPDA- 251

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHI-FYFGT--KYSLPMSATFKGADGKDHYV 312
                   +  ++ ++  +K                 T  + S    A            
Sbjct: 252 ---EQPNQDVSVWRAITRDKMTLVNVWYPESSEIKLATCGRPSAEKWAEVVNFHAVKRIA 308

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
                 +  + V       +H  K      +     + +IN+     +  +  +K+   +
Sbjct: 309 PDLDANVENVEVAWWNSVLAHGSKSGSVEKADDKKPLKVINLVDGRLLLNEDKQKLQDAM 368

Query: 373 S 373
            
Sbjct: 369 E 369



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 100/247 (40%), Gaps = 39/247 (15%)

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
            P   E     D+  + +I E           + +               +  E+GH F+
Sbjct: 373 LPFAKEAYAKFDLSQVTTITESKDGEPLNLIKIRDGDACPKCDSGTLSVRKATELGHTFH 432

Query: 290 FGTKYSLPMSATFK---------------GADGKDHYV----------QMGSYGIGAMRV 324
            G +YS PM  T K                 +G+ +            QMG +GIG  R+
Sbjct: 433 LGDRYSEPMGLTVKLPNTSQAESGSNTVSDEEGQIYSFSSKRQGEVNVQMGCHGIGVSRI 492

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC------- 377
           +AAV E   D +G+ WP ++AP+++++I   +         E IY  LS+ G        
Sbjct: 493 IAAVAEHFGDSRGLNWPRAIAPYEVAIITKNSLGD-----AESIYDLLSEGGAIATPAFP 547

Query: 378 --DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             D+  DD  + +  +   ADL+G+P+ V++G  +V   + E++ R    +E ++L+ + 
Sbjct: 548 KPDLVLDDRDKTLPWKLKDADLVGYPVVVVLGKAWVESKQCEVQCRQLSFKELVALDNLP 607

Query: 436 NYASHRF 442
                  
Sbjct: 608 GVVGKLL 614


>gi|331091565|ref|ZP_08340402.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330403730|gb|EGG83284.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 462

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/441 (14%), Positives = 140/441 (31%), Gaps = 48/441 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     +      L +   WV SG    +   ++   
Sbjct: 32  WDYGNLGVELKNNVKRAWWKKFIQENPYNVGVDCAILMNPQTWVASGHLGGFSDPLMDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           +  ++        E+   +      +S   +       +  + +       +      R+
Sbjct: 92  ECKER-FRADKLIEDFAAENGIELTESVDAWSKEQMEAWIAEHEVPCPTCKKHNFTEIRQ 150

Query: 155 FLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRA 197
           F +       +T +     Y                             ++G        
Sbjct: 151 FNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEIT 210

Query: 198 ESGPIGGDLSHEFIV---LADTG---ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                      E +      + G   E   +  K  +D+ + S     D++ + +   E+
Sbjct: 211 PGNFTFRTREFEQMELEFFCEPGTDLEWFAYWKKFCLDW-LYSLGLKEDEVRARDHSPEE 269

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
               Y+  +            E   ++ R            + S      F     + + 
Sbjct: 270 L-CFYSKATTDVEFLFPFGWGELWGIADRTDYDLSQHQ---EVSKQDMTYFDDEKKEKYI 325

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCR 362
             +    +GA R+V A + S++D +          + +  ++AP KI ++ +        
Sbjct: 326 PYVIEPSLGADRMVLAFLCSAYDEEELEGGDVRTVMHFHPALAPIKIGVLPLSKK---LN 382

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK++A LSK   +  +DD G  IG ++   D +G P  V        D  V ++ R 
Sbjct: 383 EGAEKVFAELSKT-YNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRDRD 440

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +E + +E++  Y   +F 
Sbjct: 441 TMEQERIKIEDLKAYFEKKFE 461


>gi|148272762|ref|YP_001222323.1| glycyl-tRNA synthetase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830692|emb|CAN01632.1| glycyl-tRNA synthetase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 461

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/454 (12%), Positives = 138/454 (30%), Gaps = 50/454 (11%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADL 79
           R G + Q      G    + + PLG    +N+     +     R   + +    +    +
Sbjct: 16  RRGFVFQAGEIYGGSRSAWDYGPLGVALKENIKRQWWQTMVNGRDDVVGLDSSVILPRRV 75

Query: 80  WVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           W  SG  + +   ++      +  +A      +E        + +   ++          
Sbjct: 76  WEASGHVEVFSDPLVESLHTHKRYRADHLLEAYEAKHGHPPVNGLADVKDPDTGQPGSWT 135

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------G 189
               E +   G++++    + +          +       F + L    +         G
Sbjct: 136 ----EPQNFSGLLKTFLGPVDNQEGMHYLRPETAQGIFVNFANVLSAARQKPPFGIGQIG 191

Query: 190 LKSIPMRAESGPIGGDLSHEFIVL-------ADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                       I      E + +        D    Q +    +  +       D +++
Sbjct: 192 KSFRNEITPQNWIFRTREFEQMEMEFFVEPGTDAEWHQYWIDARYAWYT--DLGIDPENL 249

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLF--DSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  E+ +     T D+     F   +  E + ++ R           ++ S    +
Sbjct: 250 RLFEHPAEKLSHYSTRTVDIEYRFGFAGGAWGELEGIANRTDYDLRTH---SEASGQDLS 306

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD------SVAPFKISLINI 354
            F     +     +     G  R + A +  ++               +V      L  +
Sbjct: 307 YFDQTKNERWIPYVIEPAAGLTRSMMAFLVDAYHEDEAPNAKGGVDKRTVLRLDRRLAPV 366

Query: 355 K------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           K      + ++       ++ A L KV  ++ +DD G  IG ++   D +G P  V V  
Sbjct: 367 KVAVLPLSRNEKLSPVARELAAELRKVW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDF 424

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             + D  V ++ R T  +E + L++++ Y + + 
Sbjct: 425 DTLDDRAVTVRERDTMAQERIPLDDLMGYLAGQL 458


>gi|216263860|ref|ZP_03435854.1| prolyl-tRNA synthetase [Borrelia afzelii ACA-1]
 gi|215979904|gb|EEC20726.1| prolyl-tRNA synthetase [Borrelia afzelii ACA-1]
          Length = 488

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/416 (15%), Positives = 132/416 (31%), Gaps = 67/416 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      + +I+ ++   TG      P L     L  E    D +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIQSILDKKFKETGHENAYFPMLIPYGFLEKEKDHIDGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   ++++                                                   
Sbjct: 93  KDAGGESLVEPLVLRP-------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF-IVLAD 215
                    +     + Y+K   SY  +  ++   +  +R E        + EF      
Sbjct: 109 --------TSETIIWNMYSKWIKSYRDLPLKINQWANVIRWEKRTRPFLRTTEFLWQEGH 160

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           T       + +     +       +D +++            + ++     +     E  
Sbjct: 161 TAHATEEEALEETLLILDVYKRFMEDYLAIPVF-----CGKKSENEKFAGAVSTYSVEAL 215

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++     Y G  ++      F+  DGK  +V   S+G+ + R++ A+I    D 
Sbjct: 216 MQDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMKHVFASSWGV-STRLIGALIMVHSDE 274

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGS 390
           KG+I P  +AP +I +I I   +        D  + +   L K    V  D D+    G 
Sbjct: 275 KGLILPPRIAPVEIIVIPIFKKEDEINKKILDYSDCVVHTLKKAEFRVEIDKDVRSSPGF 334

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFSN 444
           +F+ A+  G P+++ VG   +  + V I  R    +    +SL+ +++       +
Sbjct: 335 RFSSAEFKGIPIRIEVGINDILLNSVTIIRRDKDRKFKYQISLDSLVSKVRVELDS 390


>gi|229019625|ref|ZP_04176437.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH1273]
 gi|229025865|ref|ZP_04182261.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH1272]
 gi|228735417|gb|EEL86016.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH1272]
 gi|228741673|gb|EEL91861.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH1273]
          Length = 476

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/414 (16%), Positives = 125/414 (30%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGSVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L S     T      S V+ +K+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMSTAPSITEYLNEDSAVYYDKVQELLTMMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   KI   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKIAFDLRKAGLSVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLNAKYVAVLGEDELDKGIINLKDMATGGQEEVALDVFASYVAEKL 475


>gi|111115231|ref|YP_709849.1| prolyl-tRNA synthetase [Borrelia afzelii PKo]
 gi|123145721|sp|Q0SNA5|SYP_BORAP RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|110890505|gb|ABH01673.1| prolyl-tRNA synthetase [Borrelia afzelii PKo]
          Length = 488

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/416 (15%), Positives = 132/416 (31%), Gaps = 67/416 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      + +I+ ++   TG      P L     L  E    D +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIQSILDKKFKETGHENAYFPMLIPYGFLEKEKDHIDGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   ++++                                                   
Sbjct: 93  KDAGGESLVEPLVLRP-------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF-IVLAD 215
                    +     + Y+K   SY  +  ++   +  +R E        + EF      
Sbjct: 109 --------TSETIIWNMYSKWIKSYRDLPLKINQWANVIRWEKRTRPFLRTTEFLWQEGH 160

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           T       + +     +       +D +++            + ++     +     E  
Sbjct: 161 TAHATEEEALEETLLILDVYKRFMEDYLAIPVF-----CGKKSENEKFAGAVSTYSVEAL 215

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++     Y G  ++      F+  DGK  +V   S+G+ + R++ A+I    D 
Sbjct: 216 MQDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMKHVFASSWGV-STRLIGALIMVHSDE 274

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGS 390
           KG+I P  +AP +I +I I   +        D  + +   L K    V  D D+    G 
Sbjct: 275 KGLILPPRIAPVEIIVIPIFKKEDEINKKILDYSDCVVHTLKKAEFRVEIDKDVRSSPGF 334

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFSN 444
           +F+ A+  G P+++ VG   +  + V I  R    +    +SL+ +++       +
Sbjct: 335 RFSSAEFKGIPIRIEVGINDILLNSVTIIRRDKDRKFKYQISLDSLVSKVRVELDS 390


>gi|312196061|ref|YP_004016122.1| glycyl-tRNA synthetase [Frankia sp. EuI1c]
 gi|311227397|gb|ADP80252.1| glycyl-tRNA synthetase [Frankia sp. EuI1c]
          Length = 461

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/449 (13%), Positives = 133/449 (29%), Gaps = 41/449 (9%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G +   S    G+   + + PLG +  +NV     +   Q R   + +    + + ++
Sbjct: 17  RRGFVFPSSEIYGGLRASWDYGPLGVELKNNVKRAWWKSVVQGRDDVVGLDSCVILAREV 76

Query: 80  WVESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTD-------IFRSHIKSYRNL 128
           W  SG  + +   +    + + +     +      +                  +     
Sbjct: 77  WETSGHVEVFVDPLTECTNCHKRYRADHLEEAFEAKHGRAPAGLAEVVCTNCGTRGAFTE 136

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           P  F  +   +   +    G+   R    +  +      + +        +  +    R 
Sbjct: 137 PKMFNGLLKTYLGPVEDPSGLAYLRPETAQGIFINYANVQSTARRKPPFGIGQIGKSFRN 196

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +        +         EF V     E                     D++      
Sbjct: 197 EITPGNFIFRTREFEQMEM-EFFVPPGEDEQWHDYWITERTRWYTELGIKPDNLRHYEHP 255

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
            E+ +     T D+     F  LP  +   ++ R           +K S    + F  A 
Sbjct: 256 KEKLSHYSKRTVDIEYRFNFAGLPWGELEGIANRTDYDLTAH---SKGSGADLSFFDQAT 312

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLIN 353
                  +     G  R     +  ++D                      +AP K +++ 
Sbjct: 313 NTRFTPFVIEPAAGVDRATLTFLLDAYDEDEAPNTKGGVDRRIVLRLDPRLAPVKAAVLP 372

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +  H          + A L +   +V +DD    IG ++   D +G P  V V    ++D
Sbjct: 373 LSRH-ADLSPVARDLAADLRRHW-NVEYDDSQA-IGRRYRRQDEIGTPYCVTVDFDTLND 429

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRF 442
             V I+ R +  ++ +++++V  Y + + 
Sbjct: 430 QSVTIRERDSMAQQRIAIDKVATYLNAQL 458


>gi|13542219|ref|NP_111907.1| glycyl-tRNA synthetase [Thermoplasma volcanium GSS1]
 gi|14325653|dbj|BAB60556.1| tRNA synthetase Gly [Thermoplasma volcanium GSS1]
          Length = 476

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/460 (14%), Positives = 144/460 (31%), Gaps = 45/460 (9%)

Query: 24  KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
           +L  R G           S G Y + PLG    DN+ +I ++   + GAI +  P +  A
Sbjct: 8   ELAKRRGFFWPSFSIYGGSSGFYDYGPLGTLLKDNIISIWKKSYAKEGAIFLDTPVIAPA 67

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           D++  SG  + +    ++         +        +     +  K+   L     +   
Sbjct: 68  DVFKASGHLEKFSDIAVKCEKCKTAYKLENLLKSVGIDVPLNNVEKANAVLEEYDVKCPK 127

Query: 138 K-------FRDELRPRFGVMRSR--EFLMKDAYSFDLTPEGSKHSYNKMFVS-------- 180
                   +   L  + G           +  +           +   + V         
Sbjct: 128 CGAPLRGAYEFNLMFKVGTNELYLRPETAQGIFINFKNLYNYSRNTMPIIVCQVGKGFRN 187

Query: 181 --------YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD--- 229
                               +    +S       S +F +L +TGE      K+ +    
Sbjct: 188 EISPRQALIRMREFTQAEVEVFYLNDSDFNPNGNSLKFKLLRNTGEEVTVDLKEALHSGI 247

Query: 230 FPIPSENTDFDDIISL--------NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
              P      +   S+        N +  +   P            F+ L + + +   G
Sbjct: 248 VKNPVMAYFLEKTYSILSSIGFNPNHLRAREHDPLERAHYSSETWDFEYLMDGEWIEIVG 307

Query: 282 IEVGHIFYFGTKYSLP-MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           +     +  G        +    G   +      G   I    +        +  K +  
Sbjct: 308 VSDRGTYDLGRHQQFSGENMEVDGNIPRVVEPSYGIDRIVLTILNDGYYIRDNGYKVLKL 367

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
             +V+P   ++  ++  D       ++++ ++ ++   V++D+ G  IG ++A  D +G 
Sbjct: 368 DPAVSPLHFAVFPLQRRD-GLDAKAKELFNKIKQIDPFVYYDE-GGNIGRRYARQDEIGT 425

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           P  + V  + + DS V I+ R +  +   ++EE++   S 
Sbjct: 426 PFCITVDYETLEDSTVTIRERDSTKQVRENIEELLQKISD 465


>gi|238917275|ref|YP_002930792.1| glycyl-tRNA synthetase, class II [Eubacterium eligens ATCC 27750]
 gi|259511934|sp|C4Z1I4|SYG_EUBE2 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|238872635|gb|ACR72345.1| glycyl-tRNA synthetase, class II [Eubacterium eligens ATCC 27750]
          Length = 462

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/445 (13%), Positives = 138/445 (31%), Gaps = 56/445 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKKAWWQKF----VQESPYNVGVDCAILMNPQTWVASGHLGGFSDPL 87

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVM 150
           +   + +++        E+   +       S   +       +  +         +    
Sbjct: 88  MDCKECHER-FRADKLIEDWADENSYDLGGSVDGWTQEQMKNFIDEKNICCPSCGKHNFT 146

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------R 187
             R+F +       +T +     Y +          F +  R                 R
Sbjct: 147 DIRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFR 206

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
             +        +          F       E   +  +  +D+ + +     D++ + + 
Sbjct: 207 NEITPGNFTFRTREFEQMELEFFCKPGTDLEWFTYWRQYCIDW-LKALGIKEDEMRARDH 265

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             E+    Y+  +            E   ++ R              S    + F     
Sbjct: 266 SPEEL-CFYSKGTTDIEFLFPFGWGELWGIADRTDYDLTQHQT---VSGEDMSYFDDEAK 321

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHD 358
           + +   +    +GA RV  A + S++D + +          +  ++AP KI ++ +    
Sbjct: 322 EKYIPYVIEPSLGADRVTLAFLCSAYDEEELEGGDVRTVLHFHPAIAPVKIGILPLSKK- 380

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  EK+YA LSK   +  +DD G  IG ++   D +G P  +        D  V +
Sbjct: 381 --LNEGAEKVYAELSKY-YNCEFDDRG-NIGKRYRRQDEIGTPFCITYDFDSEEDGAVTV 436

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +E + + ++  Y   +F 
Sbjct: 437 RDRDTMQQERIKIADLKAYFEDKFR 461


>gi|256832756|ref|YP_003161483.1| glycyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
 gi|256686287|gb|ACV09180.1| glycyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
          Length = 461

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/451 (14%), Positives = 139/451 (30%), Gaps = 45/451 (9%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNR--TGAIEMSVPTLQSADL 79
           R G + Q      G    + + PLG +  +N+     +   R     + +    +    +
Sbjct: 17  RRGFVFQSGEIYGGSRSAWDYGPLGAELKENIKRQWWQSVVRGRDDVVGIDSSVILPRAV 76

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG    +   ++     + +        E    +  +       +        +   
Sbjct: 77  WEASGHVAVFTDPLIECTSCHKRYRQDTLQEE---FEYKKGRAPQSMDEIGCANCGKKGE 133

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLK 191
             E +   G++++    + +          +       F +              ++G  
Sbjct: 134 WTEPQNFSGLLKTYLGPVDNEQGLHYLRPETAQGIFVNFANVQTASRLKPPFGIGQIGKS 193

Query: 192 SIPMRAESGPIGGDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
                     I      E     F V   T E       D           + D++    
Sbjct: 194 FRNEITPGNFIFRTREFEQMELEFFVKPGTDEEWHQRWIDARKAWYVDLGINPDNLRLYE 253

Query: 247 SIVEQWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              E+ +     T D+     F      E + V+ R           T++S    + F  
Sbjct: 254 HPQEKLSHYSKRTVDIEYRFGFTGGEWGELEGVANRTDYDLRTH---TEHSGKDLSFFDQ 310

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISL 351
           A+G  ++  +     G  R V A +  ++                       +AP K+++
Sbjct: 311 AEGTRYFPYVIEPAAGLTRSVMAFLVEAYTEDEAPNAKGGVDKRTVLRLDPRLAPVKVAV 370

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + + + +         + A L +   +V +DD G  IG ++   D +G P  + V    +
Sbjct: 371 LPL-SRNADLSPKARDLAADLRQFW-NVDFDDAGA-IGRRYRRQDEIGTPFCITVDFDTL 427

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            D+ V I+HR +  +  ++L++V  Y +   
Sbjct: 428 EDNAVTIRHRDSMEQHRVALDQVRTYLATHL 458


>gi|291563934|emb|CBL42750.1| glycyl-tRNA synthetase, dimeric type [butyrate-producing bacterium
           SS3/4]
          Length = 462

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/441 (14%), Positives = 138/441 (31%), Gaps = 48/441 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     +      L ++  WV SG    +   ++   
Sbjct: 32  WDYGNLGVELKNNVKRAWWKKFVQENPYNVGVDCAILMNSQTWVASGHIGGFSDPLMDCK 91

Query: 98  DRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              ++     +I     E+ +         S        Y    +       +      R
Sbjct: 92  ACKERFRADKLIEDYMAEKGVEPETPIDGWS--QEQMKKYIDDNQIPCPSCGKHDFTDIR 149

Query: 154 EFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP--- 201
           +F +       +T +     Y +          F +  R   +     I    +S     
Sbjct: 150 QFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEI 209

Query: 202 ----------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                         +  EF     T        K +    +       D++ + +   E+
Sbjct: 210 TPGNFTFRTREFEQMELEFFCKPGTDLDWFAYWKQYCIKWLQDLGIKPDEMRARDHSPEE 269

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
               Y+  +            E   ++ R              S    + F     + + 
Sbjct: 270 L-CFYSKATTDLEFLFPFGWGELWGIADRTDYDLTQHQT---VSGQDMSYFDDEVNEKYI 325

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCR 362
             +    +GA RV  A + S++D +          + +  ++AP K+ ++ +        
Sbjct: 326 PYVIEPSLGADRVTLAFLCSAYDEEELEGGDVRTVMHFHPAIAPVKVGILPLSKK---LN 382

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EK+YA LSK   +  +DD G  IG ++   D +G P  V       +D  V ++ R 
Sbjct: 383 EGAEKVYAELSKY-YNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFDSETDGAVTVRDRD 440

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +  + + E+ +Y   + S
Sbjct: 441 TMEQVRIPIAELKSYFEEKLS 461


>gi|145534462|ref|XP_001452975.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420675|emb|CAK85578.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1348

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 5/188 (2%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++ I +E   RD      K  L   + HQ S G   + P G    + +   +R +    G
Sbjct: 318 YVKIQKELALRDHRNVGKKQNLY--LFHQLSPGSAFFYPSGAHIYNTLMNFLRRQYYIRG 375

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+  P + +A LW  SG YD Y + +  +    +      P +      +F     SY
Sbjct: 376 YQEVISPNIFNAQLWKISGHYDKYKENLFFINMGEEGEYGLKPMNCPGHCLMFDMIQHSY 435

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP  F    +  R+E+     G+ R R F   DA+ F    +  +            I
Sbjct: 436 RDLPVRFADFGVLHRNEVHGALSGLTRVRRFQQDDAHIFCRMDQIQEE-IKSCLDFLSYI 494

Query: 185 FHRLGLKS 192
           +   G + 
Sbjct: 495 YSLFGFEF 502


>gi|153815621|ref|ZP_01968289.1| hypothetical protein RUMTOR_01857 [Ruminococcus torques ATCC 27756]
 gi|317502155|ref|ZP_07960332.1| glycine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331090328|ref|ZP_08339212.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145847052|gb|EDK23970.1| hypothetical protein RUMTOR_01857 [Ruminococcus torques ATCC 27756]
 gi|316896442|gb|EFV18536.1| glycine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330401463|gb|EGG81048.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 466

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/442 (15%), Positives = 144/442 (32%), Gaps = 47/442 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     +      L +   WV SG    +   ++   
Sbjct: 33  WDYGNLGVELKNNVKKAWWKKFVQENPYNVGVDCAILMNPQTWVASGHLGGFSDPLMDCK 92

Query: 98  DRNDK--AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           + +++  A        E         +  +     T +  + +       +      R+F
Sbjct: 93  ECHERFRADKLIEDFCEEKGIELEGSVDGWSQEEMTAFIEEHQIPCPTCGKHNFTDIRQF 152

Query: 156 LMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
            +       +T +     Y        +FV++  +      K     A+ G    +    
Sbjct: 153 NLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKLPFGIAQIGKSFRNEITP 212

Query: 209 ---------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                          EF    DT        K+F    +       D++   +   E+ +
Sbjct: 213 GNFTFRTREFEQMELEFFCKPDTDLEWFDYWKNFCLNWLSELGLKEDEVRYRDHDAEELS 272

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
             Y+  +            E   ++ R              S      F     + +   
Sbjct: 273 -FYSKATTDVEFLFPFGWGELWGIADRTDYDLTQHQ---NVSGQDLTYFDDEAKEKYIPY 328

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVC 361
           +    +GA R+V A + S++D + I             +  ++AP KI ++ +       
Sbjct: 329 VIEPSLGADRMVLAFLCSAYDEENIGTEEKPDMRTVLHFHPALAPVKIGVLPLSKK---L 385

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  EK++A+LSK   +  +DD G  IG ++   D +G P  V        D  V ++ R
Sbjct: 386 NEGAEKVFAQLSKY-YNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRDR 443

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            T  +E + +E++  Y   +F 
Sbjct: 444 DTMEQERVKIEDLKAYFEKKFE 465


>gi|319892622|ref|YP_004149497.1| Glycyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162318|gb|ADV05861.1| Glycyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
          Length = 464

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/443 (14%), Positives = 142/443 (32%), Gaps = 51/443 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++        + +    L +   W  SG   ++   M+   
Sbjct: 33  WDYGPLGVELKNNVKKAWWKKFITQSPYNVGLDAAILMNPKTWEASGHLGNFNDPMIDNK 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS---RE 154
           D +          E+ M ++          L F   +  +       P  G       R+
Sbjct: 93  D-SKIRYRADKLIEDYMANVKGDENFIADGLSFDEMKRIIDEEGITCPVSGTANWTDIRQ 151

Query: 155 FLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFH-----------RLGLKSIPMRA 197
           F +       +T + +   +        +FV+Y  +             ++G        
Sbjct: 152 FNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEIT 211

Query: 198 ESGPIGGDLSHEFIV--LADTGETQVFCSKDFMDFPIPSENTD--FDDIISLNSIVEQWT 253
               I      E +         T++     + DF      +     +   L    E   
Sbjct: 212 PGNFIFRTREFEQMELEFFCKPGTEIEWQNYWKDFAANWLESLGLAKENTRLRDHDEDEL 271

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDH 310
           + Y+  +     +      E   +++R       F    K+S      F        + +
Sbjct: 272 SHYSNATTDIEYRFPFGWGELWGIASR-----TDFDL-KKHSEHSGEDFSYHDPETNEKY 325

Query: 311 YVQMGSYGIGAMRVVAAVIESSHD----------GKGIIWPDSVAPFKISLINIKAHDQV 360
                   +GA RV  A +  ++D             + +  ++AP+K +++ +      
Sbjct: 326 IPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPAIAPYKAAVLPLSKK--- 382

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 K+Y +LS+    V +D+  + IG ++   D +G P  +      + D +V ++ 
Sbjct: 383 LSADAIKVYEQLSE-DFVVDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDQQVTVRD 440

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +  M + E+  + + +  
Sbjct: 441 RDTMEQVRMPISELNAFLAEKVK 463


>gi|297816202|ref|XP_002875984.1| hypothetical protein ARALYDRAFT_323549 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297321822|gb|EFH52243.1| hypothetical protein ARALYDRAFT_323549 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 496

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/442 (15%), Positives = 135/442 (30%), Gaps = 102/442 (23%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGA-IEMSVPTLQS-ADLWVESGRYDSYGKEML 94
            G Y   PL     + +      E  +         P       L  E+   + +  E+ 
Sbjct: 33  SGCYFPRPLTMAIWEIMQIFFDAEMKKMKVVKNWDFPLFVPPGVLEKENEHIEGFAPEVG 92

Query: 95  RLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
            +       +       PT E V+   F   +K YR+L             E       +
Sbjct: 93  WVTKSIKSDLEVPIATRPTSETVLYTYFSKWVKGYRDL-----------PWECNNPTPFI 141

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           RSREFL ++ +S   T   +     ++                        +   +  EF
Sbjct: 142 RSREFLWQEGHSAFATKAEADEELLQILE----------------------LFRRIYEEF 179

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           +                              +    S  E++      TS      +   
Sbjct: 180 LA--------------------------VPVVKGWKSEHEKFAGGLYTTS------VEIF 207

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +P     + RG++       G  ++      +    G+   V   S+   + R +  +I 
Sbjct: 208 IPN----TGRGVQGATSNCLGQNFAKTYEINYVDEKGETATVWQNSWTY-STRTIGVMIM 262

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCR---DACEKIYARLSKVGCDVFWDDMGE- 386
              D KG+I P  VAP ++ +I +   +   +   DAC    + L + G     D   E 
Sbjct: 263 IHGDDKGLILPPKVAPLQVVVIAVPCKNANIQRIYDACTATVSALCEAGIRAEEDLGDEY 322

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKV---------------------EIKHRLTGI 425
             G +++  ++ G PL++ +G + + + +V                      ++ R  G+
Sbjct: 323 TPGWKYSDWEMKGVPLRIEIGPRDLENDQVMKGLVFTEKTVMFGLNMELVRTVR-RDNGV 381

Query: 426 REDMSLEEVINYASHRFSNNRP 447
           +ED+    ++          + 
Sbjct: 382 KEDIPRGSLVENVKELLEKIQQ 403


>gi|154496166|ref|ZP_02034862.1| hypothetical protein BACCAP_00450 [Bacteroides capillosus ATCC
           29799]
 gi|150274721|gb|EDN01785.1| hypothetical protein BACCAP_00450 [Bacteroides capillosus ATCC
           29799]
          Length = 472

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/450 (14%), Positives = 140/450 (31%), Gaps = 59/450 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +  +WV SG   ++   ++   
Sbjct: 35  WDYGPLGVELKNNVKRAWWKKFVQENPYNVGLDAAILMNPQVWVASGHVSTFNDPLIDCK 94

Query: 98  DRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
               +     +I     E   TD+      +        +            +      R
Sbjct: 95  ACKMRHRADKLIEDYLQETGRTDVNVE---AMTQEEMVAFIRDNNVPCPGCGKSDFTDIR 151

Query: 154 EFLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMR 196
           +F +       +T + S   Y                             ++G       
Sbjct: 152 KFNLMFKTHQGVTEDSSTEVYLRPETAQGIFVNFQNIQRTTRKKLPFGVCQVGKSFRNEI 211

Query: 197 AESGPIGGDLSHE------FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                I      E      F       E   +  +   D+         D+ + L     
Sbjct: 212 TPGNFIFRIREFEQMELEFFCQPGTDLEWFAYWRQYCHDWLTN--LNIKDENLRLRDHEP 269

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           +  A Y+  +            E   V+ R            ++S      F     + +
Sbjct: 270 EELAFYSKATTDFEFMFPFGWGELWGVADRTDYDLKQHQ---EHSGKDMTYFDQEKNEHY 326

Query: 311 YVQMGSYGIGAMRVVAAVIESSHD-----------GKGIIWPDSVAPFKISLINIKAHDQ 359
              +    +GA RV  A +  ++D              + +  ++APFK +++ +     
Sbjct: 327 VPYVIEPSLGADRVTLAFLVEAYDEEVVDAEKNDVRTVMRFHPALAPFKCAVLPLSKK-- 384

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV------SD 413
               A +++YA LSK    V +D+ G  IG ++   D +G PL V V  + V      +D
Sbjct: 385 -LGPAAQEVYAELSKY-FMVDYDEAG-SIGKRYRRQDEIGTPLCVTVDFQTVGDENTPAD 441

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             V ++ R T  +  + ++++  Y   + +
Sbjct: 442 HCVTVRDRDTMEQVRLPIDQLKAYIEEKIA 471


>gi|269956954|ref|YP_003326743.1| glycyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305635|gb|ACZ31185.1| glycyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
          Length = 466

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/433 (14%), Positives = 128/433 (29%), Gaps = 37/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGK---EMLR 95
           + + PLG +  +N+     +   R    + +    +    +WV SG    +     E L 
Sbjct: 38  WDYGPLGVELKENIKRQWWKAMTRRDDVVGLDSSVILPRPVWVASGHVGVFTDPLTECLS 97

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP---------- 145
              R     +     E+   D            P    + Q     +             
Sbjct: 98  CHKRYRVDQMQEAVAEKKGLDNPDDVALDTIACPNCGTRGQWTEPRDFNMMLKTYLGPVE 157

Query: 146 -RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              G+   R    +  +        +  S     ++ +    R  +        +     
Sbjct: 158 DESGLHYLRPETAQGIFVNFANVAAATRSKPPFGIAQIGKSFRNEITPGNFIFRTREFEQ 217

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                F+      E   +       +       D +++       E+ +     T D+  
Sbjct: 218 MEMEFFVKPGTDAEWHQYWIDQRTAWYT-DLGIDPENLRHYEHPAEKLSHYSTRTVDIEY 276

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGA-DGKDHYVQMGSYGIGAM 322
              F      +     GI     F   T          ++     + ++  +     G  
Sbjct: 277 RFGFQGSEWGELE---GIANRTDFDLKTHTEHSGKDLGYRDPVTNEKYFPYVIEPAAGLT 333

Query: 323 RVVAAVIESSHDGKGI-------------IWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           R + A +  ++D                      +AP K +++ + +         EK+ 
Sbjct: 334 RSLMAFLVEAYDEDEAPNTKGGVDKRTVLHLDPRLAPVKAAVLPL-SKSTDLLPTAEKLA 392

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A L +   +V +D     IG ++   D +G P  V V    + D  V I+HR T  +E +
Sbjct: 393 AELRQHW-NVDYDVTQA-IGKRYRRQDEIGTPFCVTVDFDTLDDQAVTIRHRDTMAQERV 450

Query: 430 SLEEVINYASHRF 442
           +L++V +Y + R 
Sbjct: 451 ALDQVASYLAARL 463


>gi|268317174|ref|YP_003290893.1| histidyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
 gi|262334708|gb|ACY48505.1| histidyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
          Length = 436

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/403 (15%), Positives = 128/403 (31%), Gaps = 15/403 (3%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRYDSYGKEMLRLADRNDKAMIY 106
           +A  +V  ++RE   R    E+  P L+  +L     G+      + +    R D   + 
Sbjct: 32  RAWQHVEQVVREVLERFNFREIRTPILEPTELIARGVGQLTDIVSKEMFAFRRGDTNYVL 91

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +   +  H    +      Y I   FR E   +    +  +F +        T
Sbjct: 92  RPEVTAPVMRAYLQHRLDQQGAVQKLYYIGPCFRAENPQKGRYRQFHQFGV--ELIGAET 149

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFIVL-----ADTGET 219
           PE        M   Y     +     I     AES P   +    ++         T   
Sbjct: 150 PEADAEVIAAMMAVYEAFGLKNLRLRINTLGDAESRPRYREALRAYLQPLADRLTPTSRQ 209

Query: 220 QVFCSK-DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
           ++  +    +D     E    +    +   V++    +      H + L  +  E+    
Sbjct: 210 RLETNPLRILDTKDERERRLLEGAPRIIDFVDEKGRAHYEAVKAHLQALGIAFEEDP-FL 268

Query: 279 ARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            RG++      F   +      SA   G       + +G          AA IE      
Sbjct: 269 VRGLDYYTHTTFELESPDLGAQSALAGGGRYDLLAMDLGHDAPVPAVGFAAGIERLFIAL 328

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                       +    +   ++  R A  +    L + G  V  D  G  + +Q   A+
Sbjct: 329 QAQGYAFPEEPPLDAYLVSLGEEAMRRALVE-AQALRRAGLRVDLDLKGRSMKAQMREAN 387

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
                  VI+G + +++ +  ++   +G ++++ L+E+ ++  
Sbjct: 388 RQQARYAVIMGERELAEGRAVVRDMQSGQQQEVPLDELADFLK 430


>gi|149178521|ref|ZP_01857109.1| glycyl-tRNA synthetase [Planctomyces maris DSM 8797]
 gi|148842636|gb|EDL57011.1| glycyl-tRNA synthetase [Planctomyces maris DSM 8797]
          Length = 555

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/328 (20%), Positives = 104/328 (31%), Gaps = 38/328 (11%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            +PF   QI   FR+E+ PR  + RSREF   +   F    E     Y            
Sbjct: 252 KVPFGIAQIGKSFRNEITPRNYIFRSREFEQMEMEFFCHPDESF-EWYQYWRD------R 304

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           R         AE   I  D + E +     G   V  +  FM+     E           
Sbjct: 305 RYAWYIKHGIAEDNLILRDHTQEELAHYSVGTADVEYAFPFMEENEYGEL---------- 354

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
                    +    D+ +      + E  ++     E G   Y G   S      F    
Sbjct: 355 -----EGIAHRGDFDLRSHMEGKLVREGDQLVVEKNEHGQPKYKG---SGKDLTYFDDQT 406

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIES------SHDGKGIIWPDSVAPFKISLINIKA---- 356
            +     +     GA R   A +          D KG +   +V  F   L  +KA    
Sbjct: 407 RERFIPHVIEPAAGADRATLAFLCEAYYEDEQPDEKGNMQTRTVMRFHPRLAPVKAAVFP 466

Query: 357 --HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +    IY RL   G    +D  G  IG ++   D +G P  + V  +   D+
Sbjct: 467 LIKKAGMPEIASSIYQRLKSAGIQAVYDQQGA-IGRRYRRQDEIGTPFCLTVDGETEQDN 525

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRF 442
            V ++ R T  +  + +++V+     R 
Sbjct: 526 CVTLRDRDTLEQVRIPIDDVVTEIHKRI 553



 Score = 40.1 bits (92), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 22/92 (23%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIE------------- 68
           R G I Q S      +G + + PLG +   NV      +   T   E             
Sbjct: 14  RRGFIFQSSEIYGGLQGFWDYGPLGVELKRNVREAWWSDMITT-HNELVAPEGAPKPFSM 72

Query: 69  --MSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             +    +    +W  SG +D +   M+   +
Sbjct: 73  TGVETTIIMHPSVWKSSGHFDLFHDFMVDSKE 104


>gi|323464340|gb|ADX76493.1| glycyl-tRNA synthetase [Staphylococcus pseudintermedius ED99]
          Length = 464

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/443 (14%), Positives = 142/443 (32%), Gaps = 51/443 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++        + +    L +   W  SG   ++   M+   
Sbjct: 33  WDYGPLGVELKNNVKKAWWKKFITQSPYNVGLDAAILMNPKTWEASGHLGNFNDPMIDNK 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS---RE 154
           D +          E+ M ++          L F   +  +       P  G       R+
Sbjct: 93  D-SKIRYRADKLIEDYMANVKGDENFIADGLSFDEMKRIIDEEGITCPVSGTANWTDIRQ 151

Query: 155 FLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFH-----------RLGLKSIPMRA 197
           F +       +T + +   +        +FV+Y  +             ++G        
Sbjct: 152 FNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEIT 211

Query: 198 ESGPIGGDLSHEFIV--LADTGETQVFCSKDFMDFPIPSENTD--FDDIISLNSIVEQWT 253
               I      E +         T++     + DF      +     +   L    E   
Sbjct: 212 PGNFIFRTREFEQMELEFFCKPGTEIEWQNYWKDFAANWLESLGLAKENTRLRDHDEDEL 271

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDH 310
           + Y+  +     +      E   +++R       F    K+S      F        + +
Sbjct: 272 SHYSNATTDIEYRFPFGWGELWGIASR-----TDFDL-KKHSEHSGEDFSYHDPETNEKY 325

Query: 311 YVQMGSYGIGAMRVVAAVIESSHD----------GKGIIWPDSVAPFKISLINIKAHDQV 360
                   +GA RV  A +  ++D             + +  ++AP+K +++ +      
Sbjct: 326 IPYCIEPSLGADRVTLAFLCDAYDEEGVEGNKDARTVLHFHPAIAPYKAAVLPLSKK--- 382

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 K+Y +LS+    V +D+  + IG ++   D +G P  +      + D +V ++ 
Sbjct: 383 LSADAIKVYEQLSE-DFVVDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDQQVTVRD 440

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +  M + E+  + + +  
Sbjct: 441 RDTMEQVRMPISELNAFLAEKVK 463


>gi|311273543|ref|XP_003133916.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Sus scrofa]
          Length = 328

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 110/346 (31%), Gaps = 40/346 (11%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYS 162
               P +      +F    +S+R LP       +  R+EL     G+ R R F   DA+ 
Sbjct: 11  FALKPMNCPGHCLMFDHRPRSWRELPLRIADFGVLHRNELSGALTGLTRVRRFQQDDAHI 70

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           F    +               ++   G         + P       E    A+       
Sbjct: 71  FCAMEQIEDE-IKGCLDFLRTVYSIFGFSFKLN-LSTRPEKFLGDIEVWNQAEK------ 122

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                            ++      +     A Y    D+   ++ D++    + +   +
Sbjct: 123 -----------QLENSLNEFGEKWELNPGDGAFYGPKIDI---QIKDAIGRYHQCATIQL 168

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           +      F        + TF   DG D    V +    +G++  + A++    +  G  W
Sbjct: 169 DXQLPIRF--------NLTFVSPDGDDKKRPVIIHRAILGSVERMIAILT---ENYGGKW 217

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLG 399
           P  ++P ++ ++ +      C +  +K+  +       V  D D G  +  +   A L  
Sbjct: 218 PFWLSPRQVMVVPVGP---TCDEYAQKVQQQFHDAKFMVDIDLDPGCTLNKKIRNAQLAQ 274

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +   ++VG K  S   V I+ R   +  + ++ E +        + 
Sbjct: 275 YNFILVVGEKEKSSGTVNIRTRDNKVHGERTISETVGRLEQLRQSR 320


>gi|103486717|ref|YP_616278.1| prolyl-tRNA synthetase [Sphingopyxis alaskensis RB2256]
 gi|122985087|sp|Q1GTS7|SYP_SPHAL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|98976794|gb|ABF52945.1| prolyl-tRNA synthetase [Sphingopyxis alaskensis RB2256]
          Length = 527

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/411 (15%), Positives = 125/411 (30%), Gaps = 87/411 (21%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + +  ++       G      P       +  E+   D + KEM  +
Sbjct: 54  GCMVIKPWGYGIWERIQTVMDAAIKDAGVQNAYFPLFIPLSFFEKEADHVDGFAKEMAVV 113

Query: 97  ADRN-----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                                ++ +I  PT E V+       ++S+R+LP    Q     
Sbjct: 114 THHRLIADSKGKLVPDPEAKLEEPLIVRPTSETVIGAAMSRWVQSWRDLPLKVNQWANVV 173

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E+R R   +R+ EFL ++ ++     + +     +                       
Sbjct: 174 RWEMRTRM-FLRTSEFLWQEGHTAHADRDDAMAETLRALE-------------------- 212

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +    + + + +                            I       E++    A  
Sbjct: 213 --MYRSFAEDVLAM--------------------------PVIAGEKPENERFPGAVA-- 242

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                        E      + ++ G   Y GT ++      ++  DG        S+G 
Sbjct: 243 ---------TYSIEAMMQDGKALQAGTSHYLGTGFAEAAGIRYQDRDGGHSLCHTTSWGT 293

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVG 376
            + R++  VI +  D  G+  P  +AP +I ++ +      D    D C  + +RL  + 
Sbjct: 294 -STRMIGGVIMTHGDDDGLRCPPRIAPHQIVIVPMLRDNGEDAAILDYCRDLESRLKALD 352

Query: 377 -----CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                  V  D    +  ++       G P+ V VG + V+   V +  R 
Sbjct: 353 AFGEPVRVLLDTGANKAQTKRWGWVKKGAPIIVEVGPRDVAGGNVAVIRRD 403


>gi|312148113|gb|ADQ30772.1| prolyl-tRNA synthetase [Borrelia burgdorferi JD1]
          Length = 488

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 132/414 (31%), Gaps = 65/414 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      + +I+ ++   TG      P L     L  E    D +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIQSILDKKFKETGHENAYFPMLIPYSFLEREKDHIDGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   +++                                                    
Sbjct: 93  KDAGGESLAEPLVLRP-------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 109 --------TSETIIWNMYSKWIKSYRDLPLKINQWANVVRWEKRTRPFLRTTEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ ++  +   +  +   I     +  +    +            S+ E   
Sbjct: 159 GHTAHATEEEALEETLLILDV-YKRFIEDYLAIPVFCGKKSEKEKFAGAVSTYSI-EALM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+  DGK  +V   S+G+ + R++ A+I    D K
Sbjct: 217 QDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEK 275

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
           G++ P  +AP +I +I I   +        D  + +   L K    V  D D+    G +
Sbjct: 276 GLVLPPRIAPIEIIVIPIFKKEDEINKKILDYSDCVVDALKKAEFRVEIDKDVRSSPGFR 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFS 443
           F+ A+  G P+++ VG   V  + V I  R    +    +SL+ ++        
Sbjct: 336 FSSAEFKGIPIRLEVGINDVLLNSVTISRRDKDRKFKYQISLDSLVIKVKVELD 389


>gi|225351462|ref|ZP_03742485.1| hypothetical protein BIFPSEUDO_03057 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157806|gb|EEG71089.1| hypothetical protein BIFPSEUDO_03057 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 491

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/439 (15%), Positives = 134/439 (30%), Gaps = 42/439 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +    +WV SG    +     E L
Sbjct: 33  WDYGPLGVALKDNIKREWWRSMVVTRGDVVGVDTSIILPPAVWVASGHVSVFNDPLIECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R+    +     E+    +  + +K                  E R    ++R+  
Sbjct: 93  NCHKRHRADKLEESYAEKHGDKLPENGLKDIVCPDCGTRGNWT----EPRDFNMMLRTHL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +             +G            I    
Sbjct: 149 GPVEDENSLHYLRPETAQGIFVDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTR 208

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E       D             +++       E+       T D
Sbjct: 209 EFEQMEMEFFVAPGTDEEWHQYWIDARTQWYIDLGVKPENLRHYEHPKEKLAHYSKRTVD 268

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  +  F      +     G+     F      K+S    + F  A G+ +   +     
Sbjct: 269 IEYKFGFQGSDWGELE---GVANRTDFDLSAHAKHSGEDLSYFNQATGEKYVPYVIEPAA 325

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++D                      +AP K +++ +    ++      
Sbjct: 326 GLTRSLMAFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQT-VAH 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + A L +    + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +
Sbjct: 385 DLAADLRQHDWMIDYDEAGA-IGRRYRREDEIGTPLCITVDFDTLDDQAVTIRERDTMQQ 443

Query: 427 EDMSLEEVINYASHRFSNN 445
           E ++L++V +Y + R    
Sbjct: 444 ERVALDKVADYVAARIGEK 462


>gi|289578137|ref|YP_003476764.1| glycyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
 gi|289527850|gb|ADD02202.1| glycyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
          Length = 462

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/444 (13%), Positives = 136/444 (30%), Gaps = 56/444 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +   N+  +  +   +     +      L + ++WV SG   S+   ++   
Sbjct: 34  WDYGPLGVELKSNIKRMWWKRFIQQSPYNVGIDSAILMNPEVWVASGHVSSFSDPLMDCK 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +   +        + +        I+ + N     +  + K              R+F +
Sbjct: 94  ECKSRFRADQLIEDYIKEKELNISIEGWTNEQLMEFIKEHKVPCPKCGAHNFTNIRKFNL 153

Query: 158 KDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRAESG 200
                  +T +     Y                             ++G           
Sbjct: 154 MFKTYQGVTEDSKSEVYLRPETAQGIFVNFKNVQRTTRKKIPFGIGQIGKSFRNEITPGN 213

Query: 201 PIGGDLSHEFIV---LADTGE-------TQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            I      E +        GE        + +C    ++F +  EN  F D        +
Sbjct: 214 FIFRTREFEQMELEFFCKPGEDMEWFNYWRKYCMDWLLEFGLKKENLRFRD------HKK 267

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGA-DGK 308
           +  + Y+  +            E   ++ R       F          +  ++     G+
Sbjct: 268 EELSHYSTATTDIEYNFPFGWGELWGIANR-----TDFDLRQHMEHSGVDLSYMDPVTGE 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW---------PDSVAPFKISLINIKAHDQ 359
            +        +G  R++ A +  +++ + +             ++AP K +++ +     
Sbjct: 323 KYIPYCIEPSVGVDRLMLAFLIDAYEEEELEDGETRVVLRLHPALAPIKAAVLPLSKK-- 380

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   K+Y +L      V +D+ G  IG ++   D +G P  +       +D  V I+
Sbjct: 381 -LSENAYKLYDQLRNK-FVVDYDETG-SIGKRYRRQDEIGTPFCITYDFDSENDHCVTIR 437

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R T  +  + +EEV  Y   R +
Sbjct: 438 DRDTMEQVRVKIEEVEKYLEERLN 461


>gi|237734398|ref|ZP_04564879.1| glycyl-tRNA synthetase [Mollicutes bacterium D7]
 gi|229382628|gb|EEO32719.1| glycyl-tRNA synthetase [Coprobacillus sp. D7]
          Length = 457

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/433 (14%), Positives = 141/433 (32%), Gaps = 40/433 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+  +  +   +     +        +  +W  SG    +   ++   
Sbjct: 33  WDYGPLGVEMKNNIKQLWWKRFIQESPYNVGLDSAIFMNPRVWEASGHVGGFSDPLIDCK 92

Query: 98  D---RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD--ELRPRFGVMRS 152
           +   R+    +       V ++ + S                    +  ++R    +  +
Sbjct: 93  ECKTRHRADKLIEAYDPSVHSEGWSSEETVKYIKDHNIVCPNCGKSNFTDVRQFKLMFET 152

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG 204
           +  +++DA         +       F +  R   +         G            I  
Sbjct: 153 QMGVVEDAKDVVYLRPETAQGIFVNFKNIQRTSRKKVPFGIGQIGKAFRNEITPGNFIFR 212

Query: 205 DLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
               E     F    DT        K +    +       +++   +   E+ +    AT
Sbjct: 213 MREFEQMELEFFCKPDTDLEWFDYWKSYCQKFLFDLGLKEENLRFRDHEKEELSFYSKAT 272

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYG 318
            DV          E   ++ R           +K S      +      + +   +    
Sbjct: 273 CDV-EYNFPFGWGELWGIADRTNYDLTQHQNHSKKS----LEYLDPTTNEKYIPYVIEPS 327

Query: 319 IGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           +GA R+  +V+  S++ +          +    SVAPFK++++ +        D   +IY
Sbjct: 328 VGADRLFLSVLCDSYEEEILEDGETRVVMKLHPSVAPFKVAILPLTKK---QSDKATEIY 384

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           ++L     +  +D  G+ IG ++   D +G P  V V    + D  V ++ R T  +  +
Sbjct: 385 SQL-AKYFNCEYDVAGQ-IGKRYRRQDAIGTPYCVTVDFDTMEDETVTVRDRDTMEQIRL 442

Query: 430 SLEEVINYASHRF 442
            + ++++Y S + 
Sbjct: 443 PINQLVDYISKKI 455


>gi|257053756|ref|YP_003131589.1| prolyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
 gi|256692519|gb|ACV12856.1| prolyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
          Length = 484

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 84/240 (35%), Gaps = 6/240 (2%)

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE--KL 267
           F    +    +   +    +  +    T       L   V           D        
Sbjct: 154 FFRTKEFLWQEGHTAHHDEEDAVEEMETRLGQYKRLYEDVLAMPVLSGRKPDHDKFPGAH 213

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             +  E      + ++ G   Y GT ++     T+   D +       S+G+ + R + A
Sbjct: 214 TTTTVEALMPDGKSVQGGTSHYLGTSFAEAYDVTYVDEDEEVKTAHTTSWGL-SWRALGA 272

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHD--QVCRDACEKIYARLSKVGCDVFWDDMG 385
           +  +  D +G++ P ++A  ++ ++ I   D         E + A L   G  V  DD  
Sbjct: 273 LFMTHSDDQGLVLPPTLAETQVVIVPIWDEDSKDDVLAYAEDVEADLEDAGVRVELDDRD 332

Query: 386 EQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +  G ++   +L G PL++ +GS  V+D ++ + HR  G    +  + V          
Sbjct: 333 HRNPGFKYNEHELNGVPLRIEIGSYEVADDELTLVHRPDGEEITVERDNVAETVEDHLDT 392



 Score = 74.4 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 5/155 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +     +TG      P       L  E    + +  E+  +
Sbjct: 38  GFIVTRPRGYAIWERLKNHLDGWFKQTGVQNAYFPMFIPESYLEKEKDIVEGFDPEVAWV 97

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                D  ++ +   PT E ++T       +S+R+LP    Q     R E        R+
Sbjct: 98  TKGGYDELEEQLAVRPTSESIITPFLAQWTRSHRDLPIRVNQWCSVVRWEATETKPFFRT 157

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           +EFL ++ ++     E +          Y R++  
Sbjct: 158 KEFLWQEGHTAHHDEEDAVEEMETRLGQYKRLYED 192


>gi|212715520|ref|ZP_03323648.1| hypothetical protein BIFCAT_00418 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660887|gb|EEB21462.1| hypothetical protein BIFCAT_00418 [Bifidobacterium catenulatum DSM
           16992]
          Length = 491

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/439 (15%), Positives = 134/439 (30%), Gaps = 42/439 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    DN+           R   + +    +    +WV SG    +     E L
Sbjct: 33  WDYGPLGVALKDNIKREWWRSMVVTRGDVVGVDTSIILPPAVWVASGHVSVFNDPLIECL 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R+    +     E+    +  + +K                  E R    ++R+  
Sbjct: 93  NCHKRHRADKLEESYAEKHGDKLPENGLKDIVCPDCGTRGNWT----EPRDFNMMLRTHL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGG-- 204
             ++D  S       +       F + +             +G            I    
Sbjct: 149 GPVEDENSLHYLRPETAQGIFVDFKNVMTSSRSKPPFGIANMGKSFRNEITPGNFIFRTR 208

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V   T E       D             +++       E+       T D
Sbjct: 209 EFEQMEMEFFVAPGTDEEWHQYWIDARTQWYIDLGVKPENLRHYEHPKEKLAHYSKRTVD 268

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGI 319
           +  +  F      +     G+     F      K+S    + F  A G+ +   +     
Sbjct: 269 IEYKFGFQGSDWGELE---GVANRTDFDLSAHAKHSGEDLSYFNQATGEKYVPYVIEPAA 325

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++D                      +AP K +++ +    ++      
Sbjct: 326 GLTRSLMAFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQT-VAH 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + A L +    + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +
Sbjct: 385 DLAADLRQHDWMIDYDEAGA-IGRRYRREDEIGTPLCITVDFDTLDDQAVTIRERDTMQQ 443

Query: 427 EDMSLEEVINYASHRFSNN 445
           E ++L++V +Y + R    
Sbjct: 444 ERVALDKVADYVAARIGEK 462


>gi|227495136|ref|ZP_03925452.1| glycine--tRNA ligase [Actinomyces coleocanis DSM 15436]
 gi|226831588|gb|EEH63971.1| glycine--tRNA ligase [Actinomyces coleocanis DSM 15436]
          Length = 474

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/436 (13%), Positives = 134/436 (30%), Gaps = 43/436 (9%)

Query: 40  YSWLPLGQKALDNVN-----AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +N+       ++R+ ++  G   +    +    +W  SG   ++   ++
Sbjct: 46  WDYGPLGVELKENIKKAWWSRVVRQREDVVG---LDSSVILPRQVWEASGHVTAFTDPLI 102

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
                + +        E            +   +       + ++  E R   G++++  
Sbjct: 103 ECLSCHKRLRQDNLVEEYAEKKGVAEEDVTMDVIACPNCGNRGQWT-EPRAFSGLLKTFL 161

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDL 206
             + D          +       F + +    R         G            I    
Sbjct: 162 GPVDDESGLHYMRPETAQGIFVNFANVMTSARRKPPFGIGQIGKSFRNEITPGNFIFRTR 221

Query: 207 SHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             E     F V   T E       D           D + +       E+ +     T D
Sbjct: 222 EFEQMELEFFVAPGTDEEWHQYWIDERLAWYTDLGIDPEHLRLYEHPQEKLSHYSKRTVD 281

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMGSYGI 319
           +     F      +     GI     +   T    S      F     +     +     
Sbjct: 282 IEYTFGFQGSEWGELE---GIANRTDYDLSTHAEASGSKLDYFDQEKNERWTPYVIEPSA 338

Query: 320 GAMRVVAAVIESSH-------------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++                 +     +AP K++++ +   +++     +
Sbjct: 339 GLTRSLMAFLIEAYCEDEAPNAKGGIDTRVVLKLDPRLAPVKVAVLPLSKKEELATP-AK 397

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++ A L K   +V +D+ G  +G ++   D +G P  +      + D  V I+ R T  +
Sbjct: 398 ELAAELRKRW-NVEYDEAGA-VGRRYRRQDEIGTPFCITYDFDSLEDGAVTIRDRDTMEQ 455

Query: 427 EDMSLEEVINYASHRF 442
             + L+EV++Y + R 
Sbjct: 456 VRVKLDEVVSYLNERL 471


>gi|116669891|ref|YP_830824.1| glycyl-tRNA synthetase [Arthrobacter sp. FB24]
 gi|116610000|gb|ABK02724.1| glycyl-tRNA synthetase [Arthrobacter sp. FB24]
          Length = 461

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/455 (14%), Positives = 141/455 (30%), Gaps = 52/455 (11%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNA-----IIREEQNRTGAIEMSVPTLQS 76
           R G + Q      G    + + PLG +  +N+       ++R  ++  G   +    +  
Sbjct: 16  RRGFVFQAGEIYGGSRSAWDYGPLGAELKENIKRQWWQSVVRGREDVVG---LDSSVILP 72

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +W  SG  + +   ++     + +        EE   +  +                 
Sbjct: 73  RQVWEASGHVEVFSDPLVECLSCHKR-YRADHLEEE--YEEKKGRPAENGLKDIACANCG 129

Query: 137 LKFRD-ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL------- 188
            +    E +   G++++    + +          +       F + L    +        
Sbjct: 130 TRGEWTEPQEFSGLLKTFLGPVANEEGMHYLRPETAQGIFVNFNNVLTTSRKKPPFGIGQ 189

Query: 189 -GLKSIPMRAESGPIGG-----DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
            G            I        +  EF V   T E                     +++
Sbjct: 190 IGKSFRNEITPGNFIFRTREFEQMEMEFFVEPGTDEQWHQYWMKERMDWYTGLGLKAENL 249

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSA 300
                 +E+ +     T+D+     F      +     GI     F   T  K S    +
Sbjct: 250 RFFEHPLEKLSHYSKGTTDIEYRFGFQGSEWGELE---GIANRTDFDLTTHSKASGHDLS 306

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPF 347
            F  A  + +   +     G  R   A +  ++                       +AP 
Sbjct: 307 YFNQATNERYTPYVIEPAAGLTRSFMAFLIDAYTEDEAPNAKGGVDVRTVLKLDPRLAPV 366

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           K +++ + + ++      + + A+L K   ++ +DD G  IG ++   D +G P  + V 
Sbjct: 367 KAAVLPL-SRNEDLSPKAKALGAQLRKNW-NIDFDDAGA-IGRRYRRQDEIGTPFCITVD 423

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              + D  V I+ R T  +E +SL++V  Y + R 
Sbjct: 424 FDTLEDQAVTIRERDTMSQERVSLDKVEGYLAARL 458


>gi|332654830|ref|ZP_08420572.1| glycine--tRNA ligase [Ruminococcaceae bacterium D16]
 gi|332516173|gb|EGJ45781.1| glycine--tRNA ligase [Ruminococcaceae bacterium D16]
          Length = 478

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/469 (13%), Positives = 145/469 (30%), Gaps = 65/469 (13%)

Query: 30  GMI---HQHSKGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWV 81
           G I    +   G+   + + PLG +  +NV     ++  +     + +    L +   WV
Sbjct: 19  GFIFSGSEIYGGLANTWDYGPLGVELKNNVKKAWWKKFVQENPYNVGLDAAILMNPQTWV 78

Query: 82  ESGRYDSYGKEMLRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            SG    +   ++   +  ++     +I     E  +         S   +    +  + 
Sbjct: 79  ASGHLGGFSDPLMDCKECKERFRADKLIEDWCSENGVELDKPIDAFSQEEMKN--FIEEK 136

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH-- 186
                   +      R+F +       +T +     Y +          F +  R     
Sbjct: 137 NIPCPTCGKHNFTDIRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFQNVQRTTRKK 196

Query: 187 ------------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                       R  +        +          F       E   +      D+ +  
Sbjct: 197 LPFGVCQIGKSFRNEITPGNFTFRTREFEQMELEFFCKPGTDMEWFQYWRSFCRDWLLN- 255

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                ++ + L     +    Y+  +            E   V+ R              
Sbjct: 256 -LNMKEEHLRLRDHSPEELCFYSKGTTDFEFLFPFGWGELWGVADRTDYDLTQHQT---T 311

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------------IIW 340
           S      F    G+ +   +    +GA RV  A +  ++D +               + +
Sbjct: 312 SGKDMTYFDQETGEHYIPYVVEPSLGADRVTLAFLVEAYDEEVVGQDKKGNDDVRVVMHF 371

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
             ++APFK +++ +    +V     +K+   LSK    V +DD G  IG ++   D +G 
Sbjct: 372 HPALAPFKAAILPLSKK-EVLAGPAQKLRDELSKY-FMVDYDDTG-SIGKRYRRQDEIGT 428

Query: 401 PLQVIVGSKFV------SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           P  + +  + V      +D+ V I+ R T  +  + +++V ++   + +
Sbjct: 429 PYCITLDFQTVGDENTPADNCVTIRDRDTMEQVRIPMDQVKSWLEEKLA 477


>gi|302657268|ref|XP_003020359.1| hypothetical protein TRV_05552 [Trichophyton verrucosum HKI 0517]
 gi|291184187|gb|EFE39741.1| hypothetical protein TRV_05552 [Trichophyton verrucosum HKI 0517]
          Length = 581

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 72/211 (34%), Positives = 108/211 (51%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G++  LPLG +  + +  +I +   +  A ++S+ +L S  LW +SGR      E+ R  
Sbjct: 27  GVFHLLPLGLRVQEKLERLIDKHMRKLNASKLSLSSLSSQALWKKSGRLHDDDSEVFRFV 86

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           DR     +  PTHEE +T +    IKSYR+LP   YQI  K+RDE RPR G++R REF+M
Sbjct: 87  DRKKTPFLLAPTHEEEITTVVSGLIKSYRDLPLRVYQISRKYRDEPRPRHGLLRGREFVM 146

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           KD Y+FD T   +  +YN +  +Y+ +F  L L  +   A SG +GG+LSHEF   +  G
Sbjct: 147 KDLYTFDSTEAEAIKTYNTVKEAYISLFKELKLPYVVASASSGNMGGNLSHEFHFPSPKG 206

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           E  +               +          +
Sbjct: 207 EDTIVSCSKCEYVFNEELASGKTSCKRTEHM 237



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 14/191 (7%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-----------KGADGKDHYVQM 314
               +       + + IE+ H F+ GT+YS  + A             +    +   +QM
Sbjct: 390 DECPNCGSPTLKTDQSIELAHTFHLGTRYSEVLQANVSINPAILAGAGQKGKQEPVPIQM 449

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G +GIG  R+++AV +   D KG+ WP ++APF+++++      +   +    I  + ++
Sbjct: 450 GCHGIGVSRMISAVSDILADEKGLNWPQAIAPFQVAVVP-GKGLEKEGELVYDIVTQTTQ 508

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV-SDSKVEIKHRLTGI-REDMSLE 432
              D   DD  +    +   AD++G+P+ + VG     + +KVE++ R  G  R  +SLE
Sbjct: 509 QPIDTILDDRKKDFAWKLRDADMIGYPIILAVGKNSWGAGNKVEVQCRRLGNLRTKVSLE 568

Query: 433 EVINYASHRFS 443
           EV    S   S
Sbjct: 569 EVPELVSSLLS 579


>gi|39939112|ref|NP_950878.1| glycyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
 gi|39722221|dbj|BAD04711.1| glycyl-tRNA synthetase, class II [Onion yellows phytoplasma OY-M]
          Length = 452

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/445 (13%), Positives = 146/445 (32%), Gaps = 41/445 (9%)

Query: 27  LRTGMIHQHSKGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWV 81
           +  G   +   G+   + + PLG    +N+     ++  +     + +    L ++ +W 
Sbjct: 17  VFAG--SEIYGGLANSWDYGPLGSLLKNNIKKAWLQKFVQEQPNNVLLDGSILLNSTVWK 74

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            SG  DS+   +    D  +K        E            SY  +     + Q+    
Sbjct: 75  ASGHLDSFSDPLTENQD-TNKRFRADKLIESHN-PQLDISGWSYEQMHDYLVKNQVLGTS 132

Query: 142 E---LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GL 190
               +RP   + ++ + ++ +          +       F + L+   +         G 
Sbjct: 133 NWTPIRPFNMLFKTHQGVILENSKPLYLRPETAQGIFIQFKNILKTTRKKLPFGVCQIGK 192

Query: 191 KSIPMRAESGPIGGDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                      I      E     F     T        K+ M   + +   +  ++   
Sbjct: 193 VFRNEVTPGNFIFRTCEFEQMELEFFCQPGTEAHWFKHWKNLMYDFLITLGMNPQNLTFK 252

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           +   E  +     T D+   K      E   +++R            ++S      F   
Sbjct: 253 DHKKENLSHYSQQTCDI-LFKFPWGFDELWGIASRTNFDLKTHQ---QHSKKDLTYFDET 308

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHD--------GKGIIWPDSVAPFKISLINIKAH 357
             +     +    +G  R+  A + +++          + + +   +AP+K++++ +   
Sbjct: 309 TKQKILPYVIEPSLGIERLFFAFLINNYHEESTSNETRQILTFHPFLAPYKVAVLPLIKK 368

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   ++I+  L     DV +D+  + IG ++   D++G P  + V  + ++ + V 
Sbjct: 369 --THSAKAQEIHQYL-AKHFDVCYDET-QSIGKRYRRQDMIGTPFCLTVDDQTLTHNTVT 424

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           +++R T  ++   L E   Y   + 
Sbjct: 425 LRNRDTTQQQTFLLAEAKKYIQEKI 449


>gi|41614972|ref|NP_963470.1| threonyl-tRNA synthetase [Nanoarchaeum equitans Kin4-M]
 gi|73919808|sp|Q74MP3|SYT_NANEQ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|40068696|gb|AAR39031.1| NEQ177 [Nanoarchaeum equitans Kin4-M]
          Length = 633

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 114/341 (33%), Gaps = 39/341 (11%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV-MRSREFLMKDAYS 162
            +           I +    SY+N+PF   ++   +R E      +  R R+F M D + 
Sbjct: 307 FVLRYAACFQQFAIAKDLTLSYKNVPFGMLEVADSYRFEQPGEVVLAFRLRKFYMPDLHV 366

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           F    + +   +  M    +    ++G               +L        D  + +  
Sbjct: 367 FTKDLDEAVEQFLNMHKKIMEEIKKIGRDY------------ELLINVASFEDYEKYKYI 414

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             + + D   P     +        I+                 + D L   + +    I
Sbjct: 415 IEQIYKDVKKPLLLAIYPKSDQRYWIIN------------IEYHIIDVLGRPREIGTTQI 462

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQ--MGSYGIGAMRVVAAVIESSHDGKGIIW 340
           +           S      +   DG + +V     +      R + A+ +++   +  + 
Sbjct: 463 D--------LHNSKRFGIKYIDKDGSEKHVIILHNAILGSIERYIYALFDTALRKEKPVL 514

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  ++P ++ +I +    +   +  E+I   L      V  DD  E +  +   A+ L  
Sbjct: 515 PFWISPVQVRVIPV---SEKYLEYAEQIAKELESK-FRVELDDRDETLNKKIKDAESLWV 570

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           P  +++G K + ++K+ ++ R      + SLE++I+     
Sbjct: 571 PYIIVIGEKEIKNNKITVRDRYENKVYETSLEDLISKMEEL 611


>gi|3873219|gb|AAC77448.1| DrpA [Streptococcus mutans]
          Length = 91

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/79 (53%), Positives = 58/79 (73%)

Query: 11 LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
          L+E P DA++ SH LM+R G I Q + G+YS+LPL  + ++   AI+REE ++ GA+EM 
Sbjct: 12 LREMPSDAQVISHALMVRAGYIRQVTSGVYSYLPLPNRVIEKFKAIMREEFDKIGAVEML 71

Query: 71 VPTLQSADLWVESGRYDSY 89
           PTL +ADLW ESGRYD+Y
Sbjct: 72 APTLLTADLWKESGRYDTY 90


>gi|218960761|ref|YP_001740536.1| Prolyl-tRNA synthetase 2 (Proline--tRNA ligase 2) (ProRS 2)
           [Candidatus Cloacamonas acidaminovorans]
 gi|167729418|emb|CAO80329.1| Prolyl-tRNA synthetase 2 (Proline--tRNA ligase 2) (ProRS 2)
           [Candidatus Cloacamonas acidaminovorans]
          Length = 508

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 134/436 (30%), Gaps = 87/436 (19%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    +N+   + +    TG      P       +  E+   + + KE   +
Sbjct: 39  GCMVIKPWGYAIWENIQRALDKMFRETGHRNAYFPIFIPKSFFEKEAEHIEGFAKECAIV 98

Query: 97  ADRN---------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
                               +  I  PT E ++   F   + SYR+LP    Q     R 
Sbjct: 99  THSKLEADGKGGLQLAGELTEPYIVRPTSETIIGASFAKWVNSYRDLPLLINQWANIVRW 158

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E+R R   +R+ EFL ++ ++   T + +K    KM   Y                    
Sbjct: 159 EMRTRL-FLRTTEFLWQEGHTVHETEKEAKEETLKMLNVY-------------------- 197

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                              +F         I  E T+ +                     
Sbjct: 198 ------------------AIFARDYLALPVIQGEKTESEKFPG----------------- 222

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                +     E      + ++ G   + G  ++      F+   G+  Y    S+G+ +
Sbjct: 223 ----AVTTYCIEAMMQDRKALQSGTSHFLGQNFAKASEIKFQNRKGEIEYAWTTSWGV-S 277

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCD 378
            R++ A+I +  D  G++ P  +AP  I++I I    Q         E +  +L  +  D
Sbjct: 278 TRLIGAIIMAHSDDNGLVLPPKIAPSHIAIIPIYRDAQEQKQVMAFAENVQNQLKDLYLD 337

Query: 379 -----VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG--IREDMSL 431
                   D        +       G PL++ +G + +    V +  R      ++ + +
Sbjct: 338 DVPLYTELDTRDMTSSERNWYWIKKGIPLRLEIGPRDIIHDAVMLARRDKEPQDKQSVKI 397

Query: 432 EEVINYASHRFSNNRP 447
            ++ NY        + 
Sbjct: 398 SDLTNYVLQTLVEMQQ 413


>gi|297544412|ref|YP_003676714.1| glycyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842187|gb|ADH60703.1| glycyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 462

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/444 (13%), Positives = 136/444 (30%), Gaps = 56/444 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +   N+  +  +   +     +      L + ++WV SG   S+   ++   
Sbjct: 34  WDYGPLGVELKSNIKRMWWKRFIQQSPYNVGIDSAILMNPEVWVASGHVSSFSDPLMDCK 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +   +        + +        I+ + N     +  + K              R+F +
Sbjct: 94  ECKSRFRADQLIEDYIKEKELNISIEGWTNEQLMEFIKEHKVPCPKCGAHNFTNIRKFNL 153

Query: 158 KDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRAESG 200
                  +T +     Y                             ++G           
Sbjct: 154 MFKTYQGVTEDSKSEVYLRPETAQGIFVNFKNVQRTTRKKIPFGIGQIGKSFRNEITPGN 213

Query: 201 PIGGDLSHEFIV---LADTGE-------TQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            I      E +        GE        + +C    ++F +  EN  F D        +
Sbjct: 214 FIFRTREFEQMELEFFCKPGEDMEWFNYWRKYCMDWLLEFGLKKENLRFRD------HKK 267

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGA-DGK 308
           +  + Y+  +            E   ++ R       F          +  ++     G+
Sbjct: 268 EELSHYSTATTDIEYNFPFGWGELWGIANR-----TDFDLRQHMEHSGVDLSYMDPATGE 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW---------PDSVAPFKISLINIKAHDQ 359
            +        +G  R++ A +  +++ + +             ++AP K +++ +     
Sbjct: 323 KYIPYCIEPSVGVDRLMLAFLIDAYEEEELENGETRVVLRLHPALAPIKAAVLPLSKK-- 380

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   K+Y +L      V +D+ G  IG ++   D +G P  +       +D  V I+
Sbjct: 381 -LSENAYKLYDQLRNK-FVVDYDETG-SIGKRYRRQDEIGTPFCITYDFDSENDHCVTIR 437

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R T  +  + +EEV  Y   R +
Sbjct: 438 DRDTMEQVRIKIEEVEKYLEERLN 461


>gi|219685452|ref|ZP_03540270.1| proline--tRNA ligase [Borrelia garinii Far04]
 gi|219673008|gb|EED30029.1| proline--tRNA ligase [Borrelia garinii Far04]
          Length = 488

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 133/415 (32%), Gaps = 65/415 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      + +I+ ++   TG      P L     L  E    + +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIQSILDKKFKETGHENAYFPMLIPYGFLEKEKDHIEGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            +   +++                                                    
Sbjct: 93  KEAGGESLAEPLILRP-------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 109 --------TSETIIWNMYSKWIKSYRDLPLKINQWANVVRWEKRTRPFLRTTEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ ++  +   +  +   +     +  +    +            S+ E   
Sbjct: 159 GHTAHATEEEALEETLLILDL-YKRFMEDYLAIPVFCGKKSEKEKFAGAVSTYSI-EALM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+  DGK  +V   S+G+ + R++ A+I    D K
Sbjct: 217 QDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMRHVFASSWGV-STRLIGALIMVHSDEK 275

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
           G+I P  +AP +I +I I   +        D  + +   L K    V  D D+    G +
Sbjct: 276 GLILPPRIAPIEIIVIPIFKKEDEINKKILDYSDCVVNALKKAEFRVEIDKDVRSSPGFR 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFSN 444
           F+ A+  G P+++ VG   V  + V I  R    +    +SL+ + +       +
Sbjct: 336 FSSAEFKGIPIRIEVGINDVLLNSVTIVRRDKDRKFKYQISLDSLASKVKIELDS 390


>gi|86156454|ref|YP_463239.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|114152166|sp|Q2ILX2|SYP2_ANADE RecName: Full=Prolyl-tRNA synthetase 2; AltName: Full=Proline--tRNA
           ligase 2; Short=ProRS 2
 gi|85772965|gb|ABC79802.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 510

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/464 (14%), Positives = 139/464 (29%), Gaps = 84/464 (18%)

Query: 3   RSKYFLPILQENPRD-AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
            S+++L +++    D AE +S    +R  M+ +         P G    ++V  ++    
Sbjct: 18  FSEWYLEVIKA--ADLAESSS----VRGCMVIK---------PWGYALWEHVQRVLDGMF 62

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             TG +    P      L   E+   + + KE   +                        
Sbjct: 63  KATGHVNAYFPLFIPLSLLEKEAAHVEGFAKECAVVTHHR-------------------- 102

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
                                 L  R G +     L +       +      S+ +   S
Sbjct: 103 ----------------------LEARDGKLVPVGELEEPLIVRPTSETIIGESFARWVQS 140

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +   +   +  +R E        + EF+     G T      + +D  +        
Sbjct: 141 YRDLPLLINQWANVVRWEMRTRMFLRTAEFL--WQEGHTAHATEPEAIDETMQMLGIYA- 197

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLF-----DSLPENKRVSARGIEVGHIFYFGTKYS 295
                    E+W A      +    + F         E      + ++ G   + G  ++
Sbjct: 198 ------RFAEEWMALPVVQGEKTESERFPGAVRTYCIEAMMQDRKALQAGTSHFLGQNFA 251

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                 F+   G   +    S+G+ + R++ A+I +  D  G++ P  +AP ++ +I + 
Sbjct: 252 KASGIQFQDEKGTLTHAWTTSWGL-STRMIGAMIMTHGDDDGMVCPPRLAPQQVVIIPVI 310

Query: 356 AH---DQVCRDACEKIYARLSK-----VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
                 +     C  +   L           V  D    Q   +       G P+++ VG
Sbjct: 311 QKPEVREQVLAWCTALKRELEAQTYAGAPVRVHLDARDLQGAKKSWEWIKKGTPVRLEVG 370

Query: 408 SKFVSDSKVEI--KHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            + +    V +  + R    ++ +   E++          +  L
Sbjct: 371 PRDIEKGAVFMGRRDRKPREKQSVPRAELVAGVGALLQEIQDAL 414


>gi|312875916|ref|ZP_07735906.1| glycyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797397|gb|EFR13736.1| glycyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 434

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/435 (14%), Positives = 134/435 (30%), Gaps = 35/435 (8%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G I Q S    G+   + + PLG +  +N+  +  +   Q R   + +    L +  +
Sbjct: 13  RRGFIFQSSEIYGGLNSCWDYGPLGVEMKNNIKRLWWKANVQLRDDVVGLDSSILMNPKV 72

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG   ++   M        +        +E         +   R     F       
Sbjct: 73  WEASGHLSNFADPMADCKVCKKR--WRVDQLQEYKCPECGGELTEARMFNLMFKTFMGPV 130

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
            DE    +     R    +  +   +  + +        ++ +    R  +        +
Sbjct: 131 EDESAVVY----LRPETAQGIFVNFINVQQTMRKKLPFGIAQIGKSFRNEITPGNFIFRT 186

Query: 200 GPIGGDLSHEFIVL--ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                     F+     +         +    + +  +     + + +    +   A YA
Sbjct: 187 REFEQMEIEYFVKPGTDEQWHKHWIEQRINWYYKLGIKK----ENLRIREHGKDELAHYA 242

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                          E + ++ R            KYS      F     + +   +   
Sbjct: 243 KACVDIEYLFPMGWSELEGIANRTDFDLTQHQ---KYSGENLTYFDDETKQRYIPYVIEP 299

Query: 318 GIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKI 368
             G  R + A +  +++ + I             ++AP K ++  +    +      ++I
Sbjct: 300 SAGVDRSLLAFLIDAYEYQQIDKDDFRVVLHLHPAIAPVKAAVFPL-MKKEKLVKKAKEI 358

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y  L      V +D+ G  IG ++   D +G P  + V  + + D  V I+ R T  +  
Sbjct: 359 YNELKYKWI-VQYDESG-SIGKRYRRQDEIGTPFGITVDYQTLEDETVTIRDRDTMEQVR 416

Query: 429 MSLEEVINYASHRFS 443
           + ++E+I Y   R  
Sbjct: 417 VHIKEIIPYLEERIE 431


>gi|255953035|ref|XP_002567270.1| Pc21g02050 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588981|emb|CAP95102.1| Pc21g02050 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 621

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/439 (16%), Positives = 135/439 (30%), Gaps = 90/439 (20%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
            G +   P      + +     +     G    S P   S D+   E    + +  E+  
Sbjct: 114 SGCFILKPALFFIWEEIQEYFNKAIKGMGVKNCSFPLFVSEDVLQREKDHIEGFAAEVAW 173

Query: 96  LADRN----DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ-LKFRDELRPRFGVM 150
           +        +K +   PT E VM   +   I+S+R+LP    Q   +  R E +    ++
Sbjct: 174 VTHAGSTPLEKKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWNSVVVRWEFKHPQPLL 233

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           RSREFL ++ ++  LT   ++     +   Y +I+                         
Sbjct: 234 RSREFLWQEGHTAHLTEGAAREEVLSILDYYAKIYE------------------------ 269

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFD 269
                                   E      +    +  E++    Y  T + +      
Sbjct: 270 ------------------------ELLAVPVVKGQKTEKEKFAGGNYTTTVEGYIPA--- 302

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATF------KGADGKDHYVQMGSYGIGAMR 323
                   + RGI+ G     G  +S     T               +V   S+G+ + R
Sbjct: 303 --------TGRGIQGGTSHGLGQNFSKMFGITVEDPTSTVDEKKPPLHVWQNSWGL-STR 353

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR-------LSKVG 376
            +  ++    D KG++ P  VA  ++ ++ +    +   +  EK+ A        L   G
Sbjct: 354 SLGVMVMIHSDNKGLVLPPRVAELQVIIVPVGLTAKTTEEEREKLNAEVDGLVAVLVAAG 413

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMSLEE 433
                D      G +F   +L G PL++  G    +   V    R       +  + + E
Sbjct: 414 VRADSDKSSYSPGWKFNQYELRGVPLRLEFGPGESAGHFVTTARRDIPGKDGKGSLPIPE 473

Query: 434 -------VINYASHRFSNN 445
                  ++        N 
Sbjct: 474 LATGVPALLETIQSDLYNR 492


>gi|24214088|ref|NP_711569.1| glycyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
 gi|59798589|sp|Q8F6C0|SYG_LEPIN RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|24194969|gb|AAN48587.1| glycyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 464

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/453 (13%), Positives = 145/453 (32%), Gaps = 46/453 (10%)

Query: 28  RTGMI---HQHSKGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G +    +   G+   + + P G + L N+  +  +     R   + +    L +  +
Sbjct: 20  RRGFVYPGSEIYGGLSNTFDYGPYGVELLQNLKQLWWKYFVHLREDIVGLDSSILLNPKV 79

Query: 80  WVESGRYDSYGKEMLRLADRNDK-------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           W  SG   ++   ++   +   +           G      +T    + +    N     
Sbjct: 80  WEASGHVSNFNDPLIDCKNCKTRIRADKFLEDQKGEGFATGLTLEKMNQVIKESNFACPN 139

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH------ 186
              +  F +          S     +D+    L PE ++  +                  
Sbjct: 140 CGQRGTFTEARDFNLMFKTSHGASAEDSLDIYLRPETAQGIFLNFKNVVSTTRRKIPFGI 199

Query: 187 -------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                  R  + +      +          F       E         M++         
Sbjct: 200 AQIGKSFRNEIMARQFVFRTREFEQMEMEFFCEPGTQKEWFSHWVNYCMNWLTEQVGIKK 259

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +++       E+ +  Y+  +     K      E   +++R     +     +       
Sbjct: 260 ENLRVREHEKEELS-FYSEGTSDIEFKYNFGWGELWGIASRTDYDLNQHQKFS----GED 314

Query: 300 ATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII---------WPDSVAPFKI 349
             ++     K +   +    +G  R+  AV+  +++ + +          +   +AP K 
Sbjct: 315 LKYQDQVQNKKYVPFVVEPALGVNRLFLAVVTDAYEEEKLPDGETRTVLRFSPKIAPVKA 374

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           ++  +   D    +   +I+A LSK+G ++ +DD G  IG ++   D +G P  + V   
Sbjct: 375 AIFPLMKKD-GLPEKSREIFADLSKLG-NIEYDDGGA-IGKRYRRQDEIGTPFCITVDYD 431

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + D  V ++ R +  +E +++ ++ N+   R 
Sbjct: 432 TLKDDTVTVRERDSMSQERIAVNQLKNWLFERL 464


>gi|119573935|gb|EAW53550.1| threonyl-tRNA synthetase-like 1, isoform CRA_c [Homo sapiens]
          Length = 344

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/347 (17%), Positives = 105/347 (30%), Gaps = 39/347 (11%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYS 162
           +   P +      +F    +S+R LP          R E      G+ R R F   DA+ 
Sbjct: 28  LALKPMNCPAHCLMFAHRPRSWRELPLRLADFGALHRAEASGGLGGLTRLRCFQQDDAHI 87

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           F  T +               ++  LG         + P G                   
Sbjct: 88  FCTTDQLEAE-IQSCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------L 128

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                 D           +      +     A Y    DVH   L D+L    +     +
Sbjct: 129 GDPCLWDQAEQVLKQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQL 185

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +    F    ++       +KG  G       +    +G++  +  V+    +  G  WP
Sbjct: 186 D----FQLPLRFD----LQYKGQAGALERPVLIHRAVLGSVERLLGVLA---ESCGGKWP 234

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGF 400
             ++PF++ +I + +  +   +  ++    L   G     D D G  +  +   A L  +
Sbjct: 235 LWLSPFQVVVIPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAHY 291

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
             Q +VG K  S   V I+ R      +  L E +       +   P
Sbjct: 292 NFQFVVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVELQNTRVP 338


>gi|28209979|ref|NP_780923.1| glycyl-tRNA synthetase [Clostridium tetani E88]
 gi|59798585|sp|Q899G6|SYG_CLOTE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|28202414|gb|AAO34860.1| glycyl-tRNA synthetase [Clostridium tetani E88]
          Length = 463

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/460 (14%), Positives = 155/460 (33%), Gaps = 61/460 (13%)

Query: 30  GMI---HQHSKGI---YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSA 77
           G I    +   G+   + + PLG +  +NV     ++       E      +    L + 
Sbjct: 18  GFIFPGSEIYGGLANSWDYGPLGVEFKNNVKKAWWKKF----VQESPYNVGIDAAILMNR 73

Query: 78  DLWVESGRYDSYGKEMLRLA--------DRNDKAMIYGPTHEEVMTDIFRSHI-KSYRNL 128
           ++WV SG    +   ++           D+  +  +          D + +   K + + 
Sbjct: 74  EVWVASGHVGGFSDPLMDCKECKARCRADKLIEDYMQDKDENFESADGWSNEQLKDFIDK 133

Query: 129 PFTFYQIQLKFRD-ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
                    +    ++R    + ++ + + +DA S       +       F + +R   R
Sbjct: 134 NNIACPKCGEHNFTDVRKFNLMFKTFQGVTEDAQSEIFLRPETAQGIFVNFKNAIRTTRR 193

Query: 188 LGLKSIPMRAESG-------------PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                +    +S                   +  EF     T        +D+    + S
Sbjct: 194 KMPFGMAQIGKSFRNEITPGNFTFRTREFEQMELEFFCKPGTDLEWFEYWRDYSWNFLLS 253

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
                D++       E+  A Y+  +            E   ++ R       +      
Sbjct: 254 LGLAKDNLRIREHAKEEL-AFYSKATVDIEYLFPFGWGELWGIADR-----TDYDLKQHM 307

Query: 295 SLP-MSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDS 343
           +      T+      + +        +GA RV  A +  ++D +          +    +
Sbjct: 308 NHSGKDLTYLDPETNEKYLPYCIEPSLGADRVALAFLVDAYDEEELDGGDSRTVLRLHPA 367

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +APFK +++ +       +D   ++Y+ LSK   +V +D+ G  IG ++   D +G P  
Sbjct: 368 LAPFKAAILPLTKK---LKDKSLEVYSMLSKY-FNVDYDEAG-TIGKRYRREDEIGTPYC 422

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + +    + D+ V I+ R +  +  ++++E++ Y S +  
Sbjct: 423 ITIDYDTLEDNTVTIRDRDSMDQIRINIDELVKYISEKVE 462


>gi|261417441|ref|YP_003251124.1| glycyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373897|gb|ACX76642.1| glycyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302328095|gb|ADL27296.1| glycine--tRNA ligase [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 470

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/458 (12%), Positives = 149/458 (32%), Gaps = 50/458 (10%)

Query: 28  RTGMI---HQHSKGI---YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G I    +   G+   + + P G +   N+  +  ++   +R   + +    L +  +
Sbjct: 18  RRGFIFPGSEIYDGLANTWDYGPYGVELKRNIKNLWWKKFVTSRHDVLGLDSSILLNPRV 77

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG   ++   ++     +++        E++             +      +I+   
Sbjct: 78  WKASGHVGNFSDPLVDCLACHERFRADQLLEEKLGEGCCAGKNFDEVHQMMVDNKIECPT 137

Query: 140 RDELRPRFGVMRSREFLMKDAYS------FDLTPEGSKHSYNKMFVSYLRIFHRL----- 188
             +         +  F  +            L PE ++  +         +  R+     
Sbjct: 138 CGKTDWTKPRAFNLMFQTEIGVIEGEGNKVYLRPETAQGIFVDFRNIVDNVRPRIPFGVG 197

Query: 189 --GLKSIPMRAESGPIGGDLSHEFIV---LADTG---ETQVFCSKDFMDFPIPSENTDFD 240
             G            I      E +      + G   +   F  K   ++ +       +
Sbjct: 198 QIGKSFRNEITPGNFIFRTREFEQMELEFFCEPGTELDWYNFWRKYCFEWLVNDLGVKRE 257

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +       E+ +     T+DV  E  F    E   +++R              S     
Sbjct: 258 KLRLREHAKEELSHYSNGTTDVEYEFPF-GWGELWGIASRTNYDLTQHQ---NESKVKQE 313

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD--------GKGIIWPDSVAPFKISLI 352
                  K +   +    +G  R++  ++ ++++           + +   VAP K++++
Sbjct: 314 YIDPVQNKRYIPYVVEPSLGVERLLLVLLCNAYEVEKLENDERTVLHFDPKVAPVKVAVL 373

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +       ++  E++Y +L     +V +D+  + IG ++   D LG P  V V    V 
Sbjct: 374 PLVKKG-KVKEKAEELYQKLLNRW-NVEYDET-QSIGKRYRRQDELGTPFCVTVDFDTVG 430

Query: 413 DSK--------VEIKHRLTGIREDMSLEEVINYASHRF 442
           + +        V ++ R +  +E ++++++  Y   + 
Sbjct: 431 EGESDPAKLGYVTVRERDSMKQELVAIDKLEAYLFEKL 468


>gi|147677383|ref|YP_001211598.1| histidyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
 gi|189082303|sp|A5D3E2|SYH_PELTS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|146273480|dbj|BAF59229.1| histidyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
          Length = 425

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/410 (13%), Positives = 110/410 (26%), Gaps = 17/410 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              + +  R      G  E+  P  +  +L++       D   KEM    DR  +++   
Sbjct: 20  WQYIESQFRRICREYGYGEIRTPVFEHTELFLRGVGDTTDIVEKEMYTFTDRGGRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLT 166
           P +       +  +       P   +     FR +        R R+F       F    
Sbjct: 80  PENTAPAVRAYLENRLYAGPQPVKLFYAGPMFRYDRPQAG---RFRQFHQLGVEVFGSHD 136

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIP---MRAESGPIGGDLSHEFIVLADTGETQVFC 223
           P             Y R+  +     I           +   L   F    +       C
Sbjct: 137 PAVDAEVMAMAMDFYGRLGLKNLELHINSVGCPVCRPLLRRRLQDYFRPHLER--LCKNC 194

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRV 277
              F   P+   +        + +           +   H EK+   L          R 
Sbjct: 195 RSRFDKNPLRVLDCKEAACAEIGADAPFAIDCLCESCLEHFEKVKKYLELLNVSYTVNRR 254

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RG++      F        + +  G  G+ + +     G     V  A+         
Sbjct: 255 LVRGLDYYTHTAFEVTARDIGAQSSIGGGGRYNGLVEVCGGPPTPGVGYALGLERIILAL 314

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                 +       + +    Q        +  RL   G     D +   + +Q   A  
Sbjct: 315 RQQGIGLPGESGPEVFLATAGQAVMPEAFGLLFRLRSAGISADKDYLDRSLKAQMKYAGK 374

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +G    VI+G   +    V ++    G +  + L+ V+ Y   + +  + 
Sbjct: 375 IGARYAVIIGESELKQGTVLVRDMAAGEQSAVKLDGVLQYLREKITGRKQ 424


>gi|325662226|ref|ZP_08150841.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471478|gb|EGC74699.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 462

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/444 (14%), Positives = 144/444 (32%), Gaps = 54/444 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKRAWWKKF----VQESKYNVGVDCAILMNPQTWVASGHLGGFSDPL 87

Query: 94  LRLADRNDK--AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +   +  ++  A        +      +  + ++       +  +         +     
Sbjct: 88  MDCKECKERFRADKLIEDFAQEHGIELKDSVDAWSQEEMAAWIEEHNVPCPSCGKHNFTD 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            R+F +       +T +     Y        +FV++  +      K     A+ G    +
Sbjct: 148 IRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIAQVGKSFRN 207

Query: 206 L--------------SHEFIVLADTG---ETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                            E     + G   E   +  K  +D+   S     ++ I +   
Sbjct: 208 EITPGNFTFRTREFEQMELEFFCEPGTDLEWFAYWKKFCLDWL--SSLGLKEEEIRVRDH 265

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +    Y+  +            E   ++ R            + S      F     +
Sbjct: 266 SPEELCFYSKATSDVEFLFPFGWGELWGIADRTDYDLSQHQ---EVSKQDLTYFDDEKKE 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQ 359
            +   +    +GA R+V A + S++D +          + +  ++AP KI ++ +     
Sbjct: 323 KYIPYVIEPSLGADRMVLAFLCSAYDEEELEGGDTRTVMHFHPALAPIKIGVLPLSKK-- 380

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  EK++A LSK   +  +DD G  IG ++   D +G P  V    +   D  V ++
Sbjct: 381 -LNEGAEKVFAELSKT-YNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFESEEDGAVTVR 437

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R T  +E + +E++  Y   +F 
Sbjct: 438 DRDTMEQERIKIEDLKAYFEKKFE 461


>gi|224531964|ref|ZP_03672596.1| prolyl-tRNA synthetase [Borrelia valaisiana VS116]
 gi|224511429|gb|EEF81835.1| prolyl-tRNA synthetase [Borrelia valaisiana VS116]
          Length = 488

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 133/415 (32%), Gaps = 65/415 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      + +I+ ++   TG      P L     L  E    D +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIQSILDKKFKETGHENAYFPMLIPYGFLEKEKDHIDGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                                    E L
Sbjct: 93  K----------------------------------------------------NAGGESL 100

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           M+       +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 101 MEPLVLRPTSETIIWNMYSKWIKSYRDLPLKINQWANVIRWEKRTRPFLRTTEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ ++  +   +  +   +     +  +    +            S+ E   
Sbjct: 159 GHTAHATEEEALEETLLILDV-YKRFMEDYLAIPVFCGKKSEKEKFAGAVSTYSI-EALM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+  DGK  +V   S+G+ + R++ A+I    D K
Sbjct: 217 QDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMKHVFASSWGV-STRLIGALIMVHSDEK 275

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
           G+I P  +AP +I +I I   +        D  + +   L K    V  D D+    G +
Sbjct: 276 GLILPPRIAPIEIIVIPIFKKEDEINKKILDYSDCVMQILKKAEFRVEIDKDIRSSPGFR 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFSN 444
           F+ A+  G P+++ VG   +  + V +  R    +    +SL+ + +       +
Sbjct: 336 FSSAEFKGIPIRLEVGINDILLNSVTLVRRDKEKKFKYQISLDSLASKVKVELDS 390


>gi|325107787|ref|YP_004268855.1| glycyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305]
 gi|324968055|gb|ADY58833.1| glycyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305]
          Length = 553

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 112/355 (31%), Gaps = 41/355 (11%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D A +   T + +  +       S   LPF   QI   FR+E+ PR    RSREF   + 
Sbjct: 227 DAAFLRPETAQGMFVNFKNVVDSSRVKLPFGICQIGKSFRNEITPRNFTFRSREFEQMEI 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F    E +   Y        + +  LG+      A       +   E +     G   
Sbjct: 287 EFFCRPDESAN-WYQYWRNRRFQWYTDLGI------ASDKLQLREHHKEELAHYSVGTAD 339

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
           +       ++  P         +S     E     +    D+ +        E K     
Sbjct: 340 I-------EYAFP--------FLSPGDYGELEGVAHRGDFDLRSHM------EGKLDGDL 378

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------SHD 334
            +++        + S    + F     +     +     GA R   A +          D
Sbjct: 379 KVQLDENGQPKHRGSGKDLSYFDDQARERFVPNVIEPSAGADRATLAFLCEAYHVDEQPD 438

Query: 335 GKGIIWPDSVAPFKISLINIKA------HDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            KG +   +V  F   L  IKA        +   +   KIY  L K G    +D  G  I
Sbjct: 439 EKGKMQTRTVLRFHPRLAPIKAAVFPLIKKEGMPETAAKIYRDLKKAGLTAAYDQQGA-I 497

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  + V  +   D  V ++ R +  +  + L+ V      R  
Sbjct: 498 GRRYRRQDEIGTPYCITVDGQTAEDQTVTLRDRDSLEQTRIPLDRVTQEIQDRLR 552



 Score = 42.8 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 22/92 (23%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP--------- 72
           R G + Q S       G + + PLG +   NV     ++       E++ P         
Sbjct: 17  RRGFLFQSSEIYGGVNGFWDYGPLGVELKRNVREAWWQDMIGA-HDEITCPDGAPSAYSM 75

Query: 73  ------TLQSADLWVESGRYDSYGKEMLRLAD 98
                  +    +W  SG YD +   M+   +
Sbjct: 76  VGLESSIIMHPQVWKCSGHYDLFHDFMVDCTE 107


>gi|283769575|ref|ZP_06342471.1| glycine--tRNA ligase [Bulleidia extructa W1219]
 gi|283103843|gb|EFC05229.1| glycine--tRNA ligase [Bulleidia extructa W1219]
          Length = 460

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/435 (10%), Positives = 125/435 (28%), Gaps = 40/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P G    D +    +++  +  A  + +    L +  +W  SG    +   ++   
Sbjct: 34  WDFGPNGVLLKDAIKRAWQKKFIQEDANNVELQAAILMNPKVWQASGHLSGFSDPLMDCK 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
           +   +        EE           S   +     + Q+            + +     
Sbjct: 94  NCKTRH-RADHLIEEATNGEVSPEGWSNEEMENYIREHQMACPECGSHDFTPIRQFNLMF 152

Query: 157 MKDAYSFDLTPEGSK------HSYNKMFVSYLRIFH--------------RLGLKSIPMR 196
                  + +                 F +  R +               R  +      
Sbjct: 153 KTFQGILEDSKNTIYLRPETAQGMFVQFKNIQRAYRKKLPFGIGQIGKSFRNEITPGNFI 212

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +          F+   +  +   +     MD+ I S     +++   +   E+ +  Y
Sbjct: 213 FRTREFEQMEMEYFVKPGEDDQWFSYWRHFCMDW-ILSLGGHAENLRFRDHAKEELS-FY 270

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMG 315
           +  +     +      E   ++ R            + +     T+      + +   + 
Sbjct: 271 SKATTDIEYQFPWGWGELWGIANRTNYD----LGQHEKASGKDLTYLDPITNEKYLPYVI 326

Query: 316 SYGIGAMRVVAAVIESSHD-------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              +G  R+       ++D          ++   S     + +  +    ++  +  E++
Sbjct: 327 EPAVGVERLFFMFFTDAYDEEELENGDTRVVMRFSPVLAPVKVAVLPLRAKLHGEKAEEV 386

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L      V  D  G  IG ++   D +G P  + +  + + ++ V +++R +  +E 
Sbjct: 387 RH-LFAKHFAVQSDGSG-SIGKRYRRQDEIGTPFCITIDDESLENNMVTLRYRDSMAQER 444

Query: 429 MSLEEVINYASHRFS 443
           MS+EE +        
Sbjct: 445 MSVEEALQKVQKEIE 459


>gi|229013621|ref|ZP_04170752.1| Histidyl-tRNA synthetase 2 [Bacillus mycoides DSM 2048]
 gi|228747680|gb|EEL97552.1| Histidyl-tRNA synthetase 2 [Bacillus mycoides DSM 2048]
          Length = 476

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGSVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ +K+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDRAAKVAFDLRKAGLSVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLNAKYVAVLGEDELDKGIINLKDMATGGQEEVALDVFASYVAEKL 475


>gi|28211584|ref|NP_782528.1| histidyl-tRNA synthetase [Clostridium tetani E88]
 gi|32130099|sp|Q892X7|SYH_CLOTE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|28204025|gb|AAO36465.1| histidyl-tRNA synthetase [Clostridium tetani E88]
          Length = 439

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 133/438 (30%), Gaps = 45/438 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP  Q   + +   IR    + G I +  PT++ +++ +  G  ++  +     
Sbjct: 12  PGFMELLPADQIVFNKMKDTIRHNYEKFGFIPLDTPTIEKSEILLAKGGGETEKQIYRFN 71

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               D ++ +  T          S   S  N PF  Y I   FR E   +    R REF 
Sbjct: 72  KGNTDLSLRFDLTVPLARY---VSQHFSDLNFPFRRYHISKVFRGERNQKG---RFREFY 125

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             D            +      + Y   F  LG +   +R  +  +         V    
Sbjct: 126 QCDIDIIGNGSLSIINDAEIPSIIYQT-FKELGFEDFTIRINNRKVLNGFFEGTDVEDRK 184

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP--------------------- 255
           G   +                +  ++   +S +++                         
Sbjct: 185 G--VLRAIDKIEKIGEDGVRKELQELGLEDSKIDKIINFINIKGTKSEVIKSLKELDIEN 242

Query: 256 -------YAATSDVHNEKLF---DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                  Y     VH  K F   D   +     ARG++      + T  +         +
Sbjct: 243 DVFKEGVYELEKVVHYIKSFNVPDKNYKIDLTIARGLDYYTGTVYETVLNNYPQIGSVCS 302

Query: 306 DGKDHY---VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G+              G    +          +  I  ++ +      + I   D    
Sbjct: 303 GGRYDNLAEHYTNQKLPGVGISIGLTRLFYQLREAKIIGENASSTLSQALVIPVGD--TM 360

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +   K+  +L +            +IG +FA AD L  P  +++G   + + KV +K+  
Sbjct: 361 EYSIKVANKLRENEIISELYLEDAKIGKKFAYADKLKIPYVILIGEDELKEEKVSVKNME 420

Query: 423 TGIREDMSLEEVINYASH 440
           TG +E MSLEE I    +
Sbjct: 421 TGNQESMSLEEAIKIIKN 438


>gi|226528192|ref|NP_001140354.1| hypothetical protein LOC100272402 [Zea mays]
 gi|194699134|gb|ACF83651.1| unknown [Zea mays]
          Length = 285

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 70/169 (41%), Gaps = 5/169 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RGI+       G  ++     TF+   G    V   S+     R +  ++ +  D KG++
Sbjct: 22  RGIQGATSHCLGQNFAKMFDITFENEKGVREMVWQNSWAY-TTRSIGVMVMTHGDDKGLV 80

Query: 340 WPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVA 395
            P  VAP ++ +I +   D      + ACE     L + G     D       G +++  
Sbjct: 81  LPPKVAPIQVIVIPVPYKDADTTAIKGACESTVYTLDQSGIRADQDTRENYSPGWKYSHW 140

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ G PL++ +G K +++ +V +  R  G + D+ +  ++         
Sbjct: 141 EMKGVPLRIEIGPKDLANKQVRVVRRDNGAKVDIPVTNLVEEVKVLLDE 189


>gi|145593854|ref|YP_001158151.1| prolyl-tRNA synthetase [Salinispora tropica CNB-440]
 gi|145303191|gb|ABP53773.1| prolyl-tRNA synthetase [Salinispora tropica CNB-440]
          Length = 468

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/385 (14%), Positives = 116/385 (30%), Gaps = 59/385 (15%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLRLADRNDK 102
           P G    + + A +       GA     P       L  E+   + +  E+  +     K
Sbjct: 39  PAGYAIWERMQAEMDNRIKAAGAENAYFPLFIPEGHLKREAEHVEGFSPELAVVTHGGGK 98

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 99  QLAEPVVVRP-------------------------------------------------- 108

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +         K   SY  +   L   +  +R E  P     + EF+     G T   
Sbjct: 109 --TSETVIGEFMAKWVDSYRDLPLLLNQWANVVRWELRPRIFLRTSEFL--WQEGHTAHT 164

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             +D   +     +  ++D++     +        A           +L E      + +
Sbjct: 165 TREDARAYARRILHEAYEDLMVNVLAIPVQVGLKTARERFAGATATYTL-EGMMGDGKAL 223

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++G     G  +      ++  A+G   Y    S+G  + R++  +I    D  G+  P 
Sbjct: 224 QLGTSHELGQNFGRAFDISYTSAEGGREYAWTTSWGT-STRMLGGLIMCHGDDDGLRVPP 282

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI-GSQFAVADLLGFP 401
            +AP +  ++ +K   +   +A  +++  L   G  V  DD  +   G +   A+L G+P
Sbjct: 283 KLAPVQAYVMVVKDG-EGVGEAAARLHDALRDAGVRVALDDRTDTPFGRRAVDAELRGYP 341

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++V +G + ++     +  R  G +
Sbjct: 342 VRVEIGPRDLAAGNAVVVRRTDGSK 366


>gi|242373930|ref|ZP_04819504.1| histidyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
 gi|242348484|gb|EES40086.1| histidyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
          Length = 430

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/407 (14%), Positives = 123/407 (30%), Gaps = 21/407 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   + E        E+  P  +S +L+        D   KEM    D+ D+++   
Sbjct: 29  WRYIENKLDELMEIYNYKEIRTPIFESTELFARGVGDSTDVVQKEMYTFQDKGDRSLTLR 88

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +        ++   N P   Y     FR E + +    +  +F ++        
Sbjct: 89  PEGTAAVVRSYIEHKMQGQPNQPVKLYYNGPMFRYERKQKGRYRQFNQFGVEA--IGAEN 146

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P         +   Y     +     I    +S        +E +V         FCS  
Sbjct: 147 PSIDAEVLAMVMHIYQSFGLKHLKLVINSIGDSES--RKEYNEALVEHFEPVIDTFCSDC 204

Query: 227 ----------FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                      +D  +  +     +   +   +   +  Y      H + L     E+  
Sbjct: 205 QSRLHTNPMRILDCKVDRDKEAIKNAPRITDYLNDDSKAYFEQVKQHLDDLNIPYVEDPN 264

Query: 277 VSARGIEVGHIFYFGTKYSLPMS---ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
           +  RG++      F      P      T     G+ + +     G     +  A+     
Sbjct: 265 L-VRGLDYYTHTAFEVMMDNPNYDGAITTLCGGGRYNGLLQLLDGPSETGIGFALSIERL 323

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                     +       + I    +       K+   L K G     D +  +I  Q  
Sbjct: 324 LLALEEEDIELDIESKFDLFIVTMGEEADRYAVKLLNELRKNGVKADKDYLNRKIKGQMK 383

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            AD L     +++G + + ++ ++IKH  +G  E + L+++++Y   
Sbjct: 384 QADRLNAKYTIVIGDQELENNSIDIKHMASGESEKVQLDQLVDYFKE 430


>gi|58699832|ref|ZP_00374451.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58533650|gb|EAL58030.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 236

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 76/239 (31%), Gaps = 18/239 (7%)

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             +E  V             +  D    +      +      +     A Y    +    
Sbjct: 13  GFNEISVKFSDRPDVRAGDDEVWDRAEKALLEAVKEAGLSYELSPGEGAFYGPKLEF--- 69

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRV 324
            L D++  + +     ++       G        A + GADG  H+   +    +G    
Sbjct: 70  VLKDAIGRSWQCGTLQVDFILPERLG--------AFYIGADGHKHHPVMLHRAILGTFER 121

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++  ++ GK  +W        +++ N             KI   L + G  V  D  
Sbjct: 122 FIGILIENYAGKFPVWLAPTQLAILTITN------EADGYATKISNVLKEQGVRVKTDLT 175

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            E+I  +  +  L   P+  IVG   V+   V +++  +  +E  SLE+ I       +
Sbjct: 176 NEKISYKIRLHSLNKVPILWIVGKNEVTSKTVSVRNLGSERQESFSLEKAIELLLKSIN 234


>gi|304316701|ref|YP_003851846.1| histidyl-tRNA synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778203|gb|ADL68762.1| histidyl-tRNA synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 417

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/398 (15%), Positives = 122/398 (30%), Gaps = 11/398 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  IIRE  +  G  E+  P  +  +L++       D   KEM    D+  +++   
Sbjct: 20  WHYVENIIREICDNFGFKEIRTPGFEHTELFLRGVGESTDIVRKEMYTFNDKGGRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F  H      +P   Y I   +R E      +    +F ++   + D + 
Sbjct: 80  PEGTSPAVRAFVEHNLYAEAMPVKLYYITPVYRYERPQSGRLREHHQFGIEMFGAHDASA 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI------VLADTGETQV 221
           +    S        L + +     +                EF+      +  D  E   
Sbjct: 140 DAEVISVAMTLFKRLGLNNLELNINSIGCPNCRREYNKALKEFLGENIEKLCDDCKERYK 199

Query: 222 FCSKDFMDFPIPSENTDFDDI-ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                 +D  + S      D  + LN + +     +        E  F+ +   K V  R
Sbjct: 200 INPMRVLDCKVESCKRILKDAPLMLNYLCDDCKEHFENLQSYLKEAGFNFVINPKIV--R 257

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           G++      F    +   +       G+   +     G     V   +            
Sbjct: 258 GLDYYTKTAFEIISNDIGAQGTVCGGGRYDGLVEECGGPSIPGVGFGMGIERLLLTLENS 317

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              +   K + + I       +     +  RL   G  V  D+MG  + +Q   A+ L  
Sbjct: 318 GIEIPLPKRTDLFICTVGDDAKKYAFSMALRLRNSGLSVEVDNMGRSLKAQMKYANKLNV 377

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              +I+G   + +  V +K+   G   ++ ++ V +  
Sbjct: 378 RYTIILGEDELKNKVVRLKNMDNGEEIEIDIDNVCDKI 415


>gi|323692739|ref|ZP_08106967.1| glycyl-tRNA synthetase [Clostridium symbiosum WAL-14673]
 gi|323503181|gb|EGB19015.1| glycyl-tRNA synthetase [Clostridium symbiosum WAL-14673]
          Length = 462

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/444 (14%), Positives = 138/444 (31%), Gaps = 54/444 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L ++  WV SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKKAWWQKF----VQESPYNVGVDCAILMNSQTWVASGHLGGFSDPL 87

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVM 150
           +      ++        E+ M +       S   +       Y            +    
Sbjct: 88  MDCKACKER-FRADKLIEDYMDEKGIKIEGSVDAWSQEEMKKYIDDNNICCPSCGKHDFT 146

Query: 151 RSREFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
             R+F +       +T +     Y        +FV++  +      K     A+ G    
Sbjct: 147 DIRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQVGKSFR 206

Query: 205 DLSH----------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           +                   EF    DT        K++    + +     D++ + +  
Sbjct: 207 NEITPGNFTFRTREFEQMELEFFCEPDTDLEWFAYWKEYCINWLKALGIKEDEMRARDHE 266

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E+ +  Y+  +            E   ++ R              S      F      
Sbjct: 267 QEELS-FYSKATTDIEFLFPFGWGELWGIADRTDYDLTQHQ---NTSGQDMTYFDDEKKI 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQ 359
            +   +    +GA RV  A + +++D + I          +  ++AP KI ++ +     
Sbjct: 323 KYIPYVIEPSLGADRVTLAFLCAAYDEEEIGEGDVRTVLHFHPALAPVKIGVLPLSKK-- 380

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  EK+Y  L K   +  +DD G  IG ++   D +G P  +       +D  V ++
Sbjct: 381 -LNEGAEKVYNELCKY-YNCEFDDRG-NIGKRYRRQDEIGTPFCITYDFDSETDGAVTVR 437

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R T  +  + + E+  Y   +F 
Sbjct: 438 DRDTMEQVRVPITELKAYFEDKFR 461


>gi|260589680|ref|ZP_05855593.1| glycine--tRNA ligase [Blautia hansenii DSM 20583]
 gi|331083112|ref|ZP_08332229.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260539920|gb|EEX20489.1| glycine--tRNA ligase [Blautia hansenii DSM 20583]
 gi|330405114|gb|EGG84651.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 464

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/437 (13%), Positives = 137/437 (31%), Gaps = 40/437 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++        + +    L +   WV SG    +   ++   
Sbjct: 32  WDYGNLGVELKNNVKRAWWQKFVMESPYNVGVDCAILMNPQTWVASGHLGGFSDPLMDCK 91

Query: 98  DRNDK--AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           + +++  A      +           + ++       +  + +       +      R+F
Sbjct: 92  ECHERFRADKIIEDYCAEKGIAIEGSVDAWSQEQMKDFIEEHQIPCPTCGKHNFTDIRQF 151

Query: 156 LMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
            +       +T +     Y        +FV++  +      K     A+ G    +    
Sbjct: 152 NLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKLPFGIAQIGKSFRNEITP 211

Query: 209 ---------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                          EF    DT        K F    + S     ++I   +   E+ +
Sbjct: 212 GNFTFRTREFEQMELEFFCKPDTDLEWFAYWKQFCLDWLHSLGLKDEEIRYRDHDKEELS 271

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
             Y+  +            E   ++ R              S      F     + +   
Sbjct: 272 -FYSKATTDVEFLFPFGWGELWGIADRTDYDLTQHQ---NVSGQDMTYFDDETNQKYIPY 327

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN--------IKAHDQVCRDAC 365
           +    +GA R+V A + S++D + +    +     +            +    +   +  
Sbjct: 328 VIEPSLGADRMVLAFLCSAYDEEVLDAEKNDVRTVLRFHPALAPVKIGVLPLSKKLNEGA 387

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            K++ +LSK   +  +DD G  IG ++   D +G P  V       +D  V ++ R T  
Sbjct: 388 LKVFEQLSKK-YNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFDSETDGAVTVRDRDTME 445

Query: 426 REDMSLEEVINYASHRF 442
           +E + +E++  Y   +F
Sbjct: 446 QERVKIEDLKAYFEEKF 462


>gi|167767684|ref|ZP_02439737.1| hypothetical protein CLOSS21_02219 [Clostridium sp. SS2/1]
 gi|167710701|gb|EDS21280.1| hypothetical protein CLOSS21_02219 [Clostridium sp. SS2/1]
 gi|291560818|emb|CBL39618.1| glycyl-tRNA synthetase, dimeric type [butyrate-producing bacterium
           SSC/2]
          Length = 462

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/445 (15%), Positives = 143/445 (32%), Gaps = 56/445 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG   ++   +
Sbjct: 32  WDYGNLGVELKNNVKKAWWKKFI----QESPYNVGIDAAILMNPQTWVASGHLGNFSDPL 87

Query: 94  LRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           +   + +++     +I     E  M         S   +     +  +        +   
Sbjct: 88  MDCKECHERFRADKLIEDYMQEHGMEIEGSVDAWSKEEMESFINEHDVVCP--TCGKKNF 145

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESG 200
              R+F +       +T +     Y +          F +  R   +     I    +S 
Sbjct: 146 TEIRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSF 205

Query: 201 P-------------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
                             +  EF    D         K++    + +     D++   + 
Sbjct: 206 RNEITPGNFTFRTREFEQMELEFFCEPDKDLEWFEYWKNYCINWLQTLGIKEDEMRVRDH 265

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             E+ +    ATSD+          E   ++ R              S      F   + 
Sbjct: 266 EKEELSHYSKATSDI-EFMFPFGWGELWGIADRTDYDLTQHQ---NTSGEDLTYFDDVNK 321

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHD 358
           + +   +    +GA RV  A + S++D + +          +  ++AP KI ++ +    
Sbjct: 322 ERYIPYVIEPSLGADRVTLAFLCSAYDEEELEGGDTRTVLHFHPALAPVKIGILPLSKK- 380

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   K+Y  L     +  +D+ G  IG ++   D +G P  V      + D  V +
Sbjct: 381 --LSDGAMKVYEEL-AKEYNCEFDERG-NIGKRYRRQDEIGTPYCVTFDFDSLEDGAVTV 436

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +E + +E++  Y + +F+
Sbjct: 437 RDRDTMEQERVKIEDLKAYFAEKFA 461


>gi|121730168|ref|ZP_01682562.1| threonyl-tRNA synthetase [Vibrio cholerae V52]
 gi|121628087|gb|EAX60627.1| threonyl-tRNA synthetase [Vibrio cholerae V52]
          Length = 153

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 52/148 (35%), Gaps = 7/148 (4%)

Query: 300 ATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+ G   +    V +    +G++     ++   + G    W        +++       
Sbjct: 7   ATYVGESNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVVVNIT------ 60

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   ++  +L K G     D   E+IG +     L   P  ++ G + +   ++ +
Sbjct: 61  DKQADYAHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAV 120

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R         L++ I +     ++ +
Sbjct: 121 RTRKGKDLGKFKLDDFIAHIQAEIASRK 148


>gi|290769989|gb|ADD61756.1| putative protein [uncultured organism]
          Length = 462

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/445 (13%), Positives = 138/445 (31%), Gaps = 56/445 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKKAWWQKF----VQESPYNVGVDCAILMNPQTWVASGHLGGFSDPL 87

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVM 150
           +   + +++        E+   +       S   +       +  +         +    
Sbjct: 88  MDCKECHER-FRADKLIEDWADENSYDLGGSVDGWTQEQMKNFIDEKNICCPSCGKHNFT 146

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------R 187
             R+F +       +T +     Y +          F +  R                 R
Sbjct: 147 DIRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFR 206

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
             +        +          F       E   +  +  +D+ + +     D++ + + 
Sbjct: 207 NEITPGNFTFRTREFEQMELEFFCKPGTDLEWFTYWRQYCIDW-LKALGMKEDEMRARDH 265

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             E+    Y+  +            E   ++ R              S    + F     
Sbjct: 266 SPEEL-CFYSKGTTDIEFLFPFGWGELWGIADRTDYDLTQHQT---VSGEDMSYFDDEAK 321

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHD 358
           + +   +    +GA RV  A + S++D + +          +  ++AP KI ++ +    
Sbjct: 322 EKYIPYVIEPSLGADRVTLAFLCSAYDEEELEGGDVRTVLHFHPALAPVKIGILPLSKK- 380

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  EK+YA LSK   +  +DD G  IG ++   D +G P  +        D  V +
Sbjct: 381 --LNEGAEKVYAELSKY-YNCEFDDRG-NIGKRYRRQDEIGTPFCITYDFDSEEDGAVTV 436

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +E + + ++  Y   +F 
Sbjct: 437 RDRDTMQQERIKIADLKAYFEDKFR 461


>gi|302542211|ref|ZP_07294553.1| proline-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302459829|gb|EFL22922.1| proline-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 471

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/408 (14%), Positives = 119/408 (29%), Gaps = 59/408 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +       G      P       L  E+   + +  E+  +     K
Sbjct: 41  PYGYGLWERMQGDLDARIKAVGVQNAYFPLFIPQSYLTREAEHVEGFAPELAVVTHGGGK 100

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +                                                          
Sbjct: 101 ELEEPVVVRP-------------------------------------------------- 110

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +       ++K   SY  +   +   +  +R E  P     + EF+     G T   
Sbjct: 111 --TSETIVNEYFSKWVQSYRDLPLLINQWANVVRWELRPRLFLRTTEFL--WQEGHTAHA 166

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             +D  +F        + D +     ++       A           +L E      + +
Sbjct: 167 TYEDAREFAARIHRDVYADFMENVLAMDVVLGRKTARERFAGAVNTLTL-EGMMGDGKAL 225

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
           ++G     G  ++   +  +   DG+   V   S+G    R+V A++    D  G+  P 
Sbjct: 226 QLGTSHELGQNFARAFNTRYLSRDGEQELVWQTSWGS-TTRMVGALVMMHGDDDGLRLPP 284

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFP 401
            +AP +  ++ +   D     A  +   RL+  G  V  DD      G +    +L G P
Sbjct: 285 RLAPVQAVVLAV-KGDDAVLAAVRETGDRLAAAGVRVQVDDRTDMPFGRRAVDWELRGVP 343

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           ++V +G + +      +  R+ G +E +  + V          ++ +L
Sbjct: 344 VRVEIGPRDLEAGTATLARRIPGGKEPVRTDLVAETVPKALEEDQALL 391


>gi|331086020|ref|ZP_08335103.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406943|gb|EGG86448.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 462

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/445 (15%), Positives = 143/445 (32%), Gaps = 56/445 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKRAWWKKF----VQESKYNVGVDCAILMNPQTWVASGHLGGFSDPL 87

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVM 150
           +   +  ++        E+   +       S   +       +  +         +    
Sbjct: 88  MDCKECKER-FRADKLIEDFAQEHGIELKDSVDAWSQEEMAAWIEEHNVPCPSCGKHNFT 146

Query: 151 RSREFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
             R+F +       +T +     Y        +FV++  +      K     A+ G    
Sbjct: 147 DIRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIAQVGKSFR 206

Query: 205 DL--------------SHEFIVLADTG---ETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
           +                 E     + G   E   +  K  +D+   S     ++ I +  
Sbjct: 207 NEITPGNFTFRTREFEQMELEFFCEPGTDLEWFAYWKKFCLDWL--SSLGLKEEEIRVRD 264

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
              +    Y+  +            E   ++ R            + S      F     
Sbjct: 265 HSPEELCFYSKATSDVEFLFPFGWGELWGIADRTDYDLSQHQ---EVSKQDLTYFDDEKK 321

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHD 358
           + +   +    +GA R+V A + S++D +          + +  ++AP KI ++ +    
Sbjct: 322 EKYIPYVIEPSLGADRMVLAFLCSAYDEEELEGGDTRTVMHFHPALAPVKIGVLPLSKK- 380

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  EK++A LSK   +  +DD G  IG ++   D +G P  V    +   D  V +
Sbjct: 381 --LNEGAEKVFAELSKT-YNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFESEEDGAVTV 436

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +E + +E++  Y   +F 
Sbjct: 437 RDRDTMEQERIKIEDLKAYFEKKFE 461


>gi|160895177|ref|ZP_02075950.1| hypothetical protein CLOL250_02737 [Clostridium sp. L2-50]
 gi|156863211|gb|EDO56642.1| hypothetical protein CLOL250_02737 [Clostridium sp. L2-50]
          Length = 469

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 65/448 (14%), Positives = 131/448 (29%), Gaps = 59/448 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     +      L +   WV SG    +   ++   
Sbjct: 36  WDYGNLGVELKNNVKKAWWKKFIQENPYNVGVDCAILMNPQTWVASGHLGGFADPLMDCK 95

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           + +++        E+ M +       S   + N     +  +         +      R+
Sbjct: 96  ECHER-FRADKLIEDYMAENNMEIEGSVDGWSNEEMESFIEEKNICCPSCGKHNFTGIRQ 154

Query: 155 FLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRA 197
           F +       +T +     Y                             ++G        
Sbjct: 155 FNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEIT 214

Query: 198 ESGPIGGDLSHEFIV---LADTG-------ETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
                      E +      + G         + FC     D  I  E     D      
Sbjct: 215 PGNFTFRTREFEQMELEFFCEPGTDLEWFDYWRSFCINWLKDLGIKDEEMRARD------ 268

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
              +    Y+  +            E   ++ R              S      F     
Sbjct: 269 HSPEELCFYSKGTTDIEFLFPFGWGELWGIADRTDYDLTQHQT---VSGEPMDYFDDEKK 325

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIK 355
           + +   +    +GA RV  A + +++D + I             +  ++AP KI ++ + 
Sbjct: 326 EKYIPYVIEPSLGADRVTLAFLCAAYDEENIGTEEKPDVRTVLHFHPALAPVKIGVLPLS 385

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +  EK+YA L K   +  +DD G  IG ++   D +G P  V        D  
Sbjct: 386 KK---LGEEAEKVYAELCKY-YNCEYDDRG-NIGKRYRRQDEIGTPFCVTYDFDSEEDGA 440

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           V ++ R T  +E + +E++  Y   +F 
Sbjct: 441 VTVRDRDTMEQERVKIEDLKAYFEKKFE 468


>gi|84393193|ref|ZP_00991956.1| threonyl-tRNA synthetase [Vibrio splendidus 12B01]
 gi|84376159|gb|EAP93044.1| threonyl-tRNA synthetase [Vibrio splendidus 12B01]
          Length = 147

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 55/148 (37%), Gaps = 7/148 (4%)

Query: 300 ATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           AT+ G D + H    +    +G++     ++   + G    W        + +       
Sbjct: 1   ATYVGEDNERHTPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAIVMGIT------ 54

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  ++I  +L K G  V  D   E+IG +     L   P  ++ G + +   ++ +
Sbjct: 55  DKQSEYVQEIAKKLQKSGFRVKADLRNEKIGFKIREHTLKRVPFMLVCGDQEMEAGEIAV 114

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R         +++ I+Y     SN +
Sbjct: 115 RTRKGKDLGKFKVDDFISYIQAEVSNRK 142


>gi|218133229|ref|ZP_03462033.1| hypothetical protein BACPEC_01093 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992102|gb|EEC58106.1| hypothetical protein BACPEC_01093 [Bacteroides pectinophilus ATCC
           43243]
          Length = 462

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/439 (15%), Positives = 141/439 (32%), Gaps = 46/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++        + +    L +   WV SG    +   ++   
Sbjct: 32  WDYGNLGVELKNNVKKAWWQKFVMESPYNVGVDCAILMNPQTWVASGHLGGFSDPLMDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           + +++        E+   D       S   +       +  + +       +      R+
Sbjct: 92  ECHER-FRADKLIEDWCADNNYELEGSVDGWTQEQMKNFIEEKQIACPSCGKHNFTDIRQ 150

Query: 155 FLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP---- 201
           F +       +T +     Y +          F +  R   +     I    +S      
Sbjct: 151 FNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEIT 210

Query: 202 ---------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                        +  EF     T        + +    + S     D++ + +   E+ 
Sbjct: 211 PGNFTFRTREFEQMELEFFCKPGTDLEWFNYWRSYCINWLKSLGMKDDEMRARDHSPEEL 270

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
              Y+  +            E   ++ R              S    + F     + +  
Sbjct: 271 -CFYSKGTTDIEFLFPFGWGELWGIADRTDYDLTQHQ---NVSGEDMSYFDDESKEKYIP 326

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRD 363
            +    +GA RV  A + S++D + I          +  ++AP KI ++ +        +
Sbjct: 327 YVIEPSLGADRVTLAFLCSAYDEEEIGEGDVRTVLHFHPALAPVKIGILPLSKK---LNE 383

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EKIYA LSK   +  +DD G  IG ++   D +G P  +       +D  V ++ R T
Sbjct: 384 GAEKIYAELSKK-YNCEFDDRG-NIGKRYRRQDEIGTPFCITYDFDSETDGAVTVRDRDT 441

Query: 424 GIREDMSLEEVINYASHRF 442
             +E + +E++  Y   +F
Sbjct: 442 MQQERIKIEDLKAYFEDKF 460


>gi|89100799|ref|ZP_01173652.1| histidyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89084502|gb|EAR63650.1| histidyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 424

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/407 (14%), Positives = 113/407 (27%), Gaps = 18/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    RE  +R    E+  P  +  +L++       D   KEM    DR  +++   
Sbjct: 20  WQYIEGKARELCSRFQYQEIRTPIFEHTELFLRGVGDTTDIVQKEMYTFEDRGGRSLTLR 79

Query: 108 PTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P         F  + +    N P   Y     FR E        +  +F ++   S    
Sbjct: 80  PEGTAPTVRSFVENKMHGNANQPVKLYYTGPMFRYERPQAGRFRQFVQFGVEALGSS--D 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF---IVLADTGETQVFC 223
           P             Y  +  +     I    +      +   E          GE    C
Sbjct: 138 PAIDAEVIALAMSIYTELGLKKLKLVINSLGDKES--RNSHREALIAHFKPRIGEFCSDC 195

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENK 275
                  P+   +   D    L              S  + EK+   L         +  
Sbjct: 196 QNRLEKNPMRILDCKKDREHELMQTAPSILDFLNEDSKKYFEKVQQYLADVSIDFTVDPN 255

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V          F   +      + T     G+ + +     G  A  +  A        
Sbjct: 256 LVRGLDYYNHTAFEIMSDAEGFGAITTLCGGGRYNGLTEEIGGPEAPGIGFAFSIERFLS 315

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   +     + A  +  +D    +  +L   G     D +  +I +QF  A
Sbjct: 316 ALEAEGIKLPVNEGIDCYLVALGEEAKDYSVGLLHKLRMAGISAERDYLDRKIKTQFKAA 375

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D +      ++G   +   K+ +K   TG + ++SL+  I+      
Sbjct: 376 DRMNAKYVAVLGEDELKAGKINVKSMETGDQTEVSLDSFIDQLKELI 422


>gi|300087876|ref|YP_003758398.1| glycyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527609|gb|ADJ26077.1| glycyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 440

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/463 (15%), Positives = 131/463 (28%), Gaps = 102/463 (22%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G + Q S       G + + PLG +  +N+     +   Q R   + +    L +  +
Sbjct: 19  RRGFVFQSSEIYGGQGGCWDYGPLGVQLKNNIKQAWWQSIVQERDDVVGVDSSILMNPRV 78

Query: 80  WVESGRYDSYGKEM---LRLADRNDKA--------------------------------- 103
           W  SG    +   M   L+   R                                     
Sbjct: 79  WEASGHVTGFSDPMSDCLQCKMRWRPEDFEGDVCPSCGGQLTEPRQFNLMFKTFMGPVED 138

Query: 104 -----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
                 +   T + +  +       + + LPF   QI   FR+E+     + RSREF   
Sbjct: 139 SAAVVYLRPETAQGIFVNFENVLGTTRKKLPFGIAQIGKSFRNEITTGNFIFRSREFEQM 198

Query: 159 DAYSFDL---TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           +   F          +H        Y     R     +    ++         E    A 
Sbjct: 199 ELEYFVKPGTDDYWHQHWLQARLDWYTSFGIRPENLKLRAHCDT---------ELAHYAK 249

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                 +             N    D   L    E          +   E +   + E  
Sbjct: 250 ACSDIQYLFPMGWSELEGIANRCDFD---LKQHSEYSGKKLEYFDEETRENIVPYVIEPS 306

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R +    I  +  +     + T                                  
Sbjct: 307 AGVDRSVLAFLIDAYTEEPDKDETRTVL-------------------------------- 334

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +APFK +++ +    +   +   +IYA L K    V +D+  + IG ++   
Sbjct: 335 ---KLHPRLAPFKAAVLPLSKK-EPLANLSREIYASLRKAWM-VTYDE-AQSIGRRYRRQ 388

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           D +G P  + V  + + D++V ++ R +  +  + +EE+  Y 
Sbjct: 389 DEIGTPYCITVDFQSLEDNQVTVRERDSMTQVRIPIEEIKAYL 431


>gi|94496356|ref|ZP_01302933.1| prolyl-tRNA synthetase [Sphingomonas sp. SKA58]
 gi|94424102|gb|EAT09126.1| prolyl-tRNA synthetase [Sphingomonas sp. SKA58]
          Length = 508

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 140/430 (32%), Gaps = 93/430 (21%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + +  ++ E+   TG      P       +  E+   D + KEM  +
Sbjct: 34  GCMVIRPWGYGIWERMQKLLDEQIKATGHENCYFPLFIPLSYFEKEAEHVDGFAKEMAVV 93

Query: 97  ADRN----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
                               ++ ++  PT E V+   F   ++S+R+LP    Q     R
Sbjct: 94  THHRLIQQDGKLVPDPEAKLEEPLVVRPTSETVIGAAFSRWVQSWRDLPVLINQWANVVR 153

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E+R R   +R+ EFL ++ ++   T   +     KM   Y                   
Sbjct: 154 WEMRTRM-FLRTAEFLWQEGHTAHATVGEAMDETLKMLEVYR------------------ 194

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                                             E      I       E++    A   
Sbjct: 195 ------------------------------AFAEECVAMPVIAGEKPENERFPGAVA--- 221

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                       E      + ++ G   + GT +S   +  F+ A+G+    Q  S+G+ 
Sbjct: 222 --------TYSIEAMMQDGKALQAGTSHFLGTTFSQAQNIKFQNAEGQQELAQTTSWGV- 272

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVG- 376
           + R++  +I +  D  G+  P  VAP++I ++ +      D    + C  +  RL+++  
Sbjct: 273 STRMIGGLIMTHGDDDGLRVPPRVAPYQIVIVPMLRDTEEDAAIVEYCTNLVHRLNQLDA 332

Query: 377 ----CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-------TGI 425
                    D    +  ++       G P+ + VGS+ V+   V +  R           
Sbjct: 333 FREPVRALLDKRPAKAATKRWGWVKKGAPIVIEVGSRDVAGGNVSVIRRDRLYREDGKLD 392

Query: 426 REDMSLEEVI 435
              ++ ++++
Sbjct: 393 SRIVAKDDLV 402


>gi|16081356|ref|NP_393684.1| glycyl-tRNA synthetase [Thermoplasma acidophilum DSM 1728]
 gi|10639350|emb|CAC11352.1| glycyl-tRNA synthetase related [Thermoplasma acidophilum]
          Length = 476

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 73/468 (15%), Positives = 155/468 (33%), Gaps = 87/468 (18%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS-- 88
           MI+  S G Y + PLG    DN+ A  + E  R GAI +  P +  AD++  SG  +   
Sbjct: 21  MIYGGSSGFYDYGPLGTLLKDNIIAAWKREYAREGAIFLDTPVISPADVFRASGHLEKFS 80

Query: 89  ----------------------------------------YGKEMLRLADRNDKAMIYGP 108
                                                   Y  +  +  ++      +  
Sbjct: 81  DIAVKCSKCGTPYKFESLIKSLGINEIAKTVDEAAAILEKYDVKCPKCGEKLKNPYDFNL 140

Query: 109 THEEV--------------MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
                                +    +  +  ++P    Q+   FR+E+ PR  ++R RE
Sbjct: 141 MFRVGSNDLYLRPETAQGIFINFKNLYNYARNSMPIIVCQVGKGFRNEISPRQALIRMRE 200

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F +  +      + + ++ LR    L    +     SG IG  +   F+   
Sbjct: 201 FSQAEVEVFYIENDDFPIPDSSVELNMLRNTGDLLKMKVSDALRSGIIGNRVMAYFLNKT 260

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                          + I  +     D I          A Y++ +       F+ L + 
Sbjct: 261 ---------------YEILLKLGFQPDHIRAREHDPGERAHYSSET-----WDFEYLLDG 300

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                 G+     +  G         + +         ++     G  R++  +++SS+ 
Sbjct: 301 DWTEIVGVSDRGTYDLG----RHQQFSGENFQIDGRTPKVVEPSYGLDRILLTIMDSSYY 356

Query: 335 GKGIIW-----PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            +   +        ++P  +++  ++  D       + ++ ++  +   +F+DD G  IG
Sbjct: 357 RRENGYKVLRLDPHISPIHMAIFPLQKRDD-LDKIAKDLFEKMKNIDPFIFYDDSG-NIG 414

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            ++A  D +G P  V V  +   D  V I+ R +  +  + + +++  
Sbjct: 415 RRYARQDEIGTPFCVTVDYQTKDDETVTIRERDSTSQVRVKISDLLER 462


>gi|328947281|ref|YP_004364618.1| glycyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
 gi|328447605|gb|AEB13321.1| glycyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
          Length = 484

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/465 (12%), Positives = 129/465 (27%), Gaps = 47/465 (10%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADL 79
           R G ++Q S       G + + PLG +   N+         +     + +     Q    
Sbjct: 21  RRGFVYQASEIYGGMAGAWDYGPLGVEFKRNIQNEWWHYMTQLHDDVVGLDSAIFQHHTT 80

Query: 80  WVESGRYDSYGKEMLRLADR----NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           W  SG    +   M+   +         +I     +   T        S+  +     + 
Sbjct: 81  WEASGHVGHFSDPMIDCTECKARFRADQLIEDYFDKTGETPSKPVDTMSHEEMKAFIDEK 140

Query: 136 QLKFRD------ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY--LRIFHR 187
                       ++R    + ++ +  +    S       +       F +         
Sbjct: 141 INCPTCGKHSWTDVREFNLMFKTHQGPVATEASLVYLRPETCQGIFTDFKNIVQSNRMKI 200

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
               +   ++    I            +  E + FC     D        D  +      
Sbjct: 201 PFGVAQVGKSFRNEIIFKNFIFRTCEFEQMEMEYFCKPGTEDETFARWRKDRWNFYLKYG 260

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF------YFGTKYSLPMSAT 301
           I E     +      H  K    +     +    IE  H                 M   
Sbjct: 261 IAEDHLNWHHHDKLAHYAKDAYDIQYKFPIGFEEIEGIHSRTDFDLSQHEQYSKKDMHYI 320

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI-------------IWPDSVAPFK 348
            +    K +   +     G  R     +  +++ + +                  +AP  
Sbjct: 321 DQDDGNKRYIPYVVETSAGLNRNFLMFLCEAYEEQNVAKEGEPEDFRTVLHLDPRLAPVT 380

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ +   D    +  ++I   L +      +D  G  IG ++   D +G P  V V  
Sbjct: 381 VAVLPLMKKD-GLAEKAKEIQHILKE-DFVTDYDQSG-TIGKRYRRQDEIGTPFCVTVDH 437

Query: 409 KFVSD-----SKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
             +       + V ++ R +  ++ +SL+++I +      +  PV
Sbjct: 438 DTLDSSSADFNTVTVRFRDSMEQKRVSLDDLIPFIQKEIKSYVPV 482


>gi|228993141|ref|ZP_04153063.1| Histidyl-tRNA synthetase 2 [Bacillus pseudomycoides DSM 12442]
 gi|228766600|gb|EEM15241.1| Histidyl-tRNA synthetase 2 [Bacillus pseudomycoides DSM 12442]
          Length = 423

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 122/415 (29%), Gaps = 20/415 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 13  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 72

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 73  ERSLTLRPEGTAPVVRSYVENKMYGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF---IVLAD 215
                   P             Y  +  +     +    +          E         
Sbjct: 130 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGD--AASRQAHREALIAHFEPR 187

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL---- 271
            GE    C       P+   +   D    L S     T      S  + EK+ + L    
Sbjct: 188 IGEFCSDCQSRLEKNPLRILDCKKDRDHELMSTAPSITEYLNEESTTYYEKVQELLTMMG 247

Query: 272 ----PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                +   V         +F   ++     + T     G+ + +     G     +  A
Sbjct: 248 VPFEKDPNLVRGLDYYQHTVFEIMSEADGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFA 307

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +               +         + A     +D   KI   L K G  V  D +  +
Sbjct: 308 MSIERLIMALKAENIELPIEHNIDCYVVALGDKAKDHAAKIAFDLRKAGLSVEKDYLDRK 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 368 MKAQFKSADRLNAKYVAVLGEDELDKGIINLKDMATGGQEEVALDVFASYVAEKL 422


>gi|196230369|ref|ZP_03129231.1| threonyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
 gi|196225299|gb|EDY19807.1| threonyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
          Length = 692

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 112/345 (32%), Gaps = 30/345 (8%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYS 162
                 +      +F +  +SYR+LP    +    +R E     FG+MR R   M DA+ 
Sbjct: 375 YYLKAMNCPHHHKLFAAVPRSYRDLPLRLAEYGTCYRYEQSGELFGLMRVRSMQMNDAHI 434

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           +  T E  +  +  +   YL+ F   G+    MR  +      L  +F+  ++       
Sbjct: 435 YC-TEEQFESEFRAVNEMYLKYFAIFGIDKYVMRFSTHD-PAKLGQKFVDNSE------- 485

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                                     V    A Y    DV   +++ ++     ++   +
Sbjct: 486 ----LWLKTEDMVRGVLQRTGINFIEVPNEAAFYGPKIDV---QVWSAIGREFTIATNQV 538

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +      FG         T+K  D        +    +G        +    +     +P
Sbjct: 539 DFAVPARFG--------LTYKDRDNTSKTPLCIHRAPLGTHERFVGFLI---EHYAGNFP 587

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             ++P ++ ++ I   ++   +  + I A L   G     D   + I ++ A A+ +   
Sbjct: 588 LWLSPEQVRVLPIGD-EEPLVNYAKAIQAELRAAGVRANLDSSSDPIKAKIASAEQMKVH 646

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             +++G + +    V ++    G        EVI          R
Sbjct: 647 TMLVLGHRDLEAGNVSVRVHGKGNLGAKPRAEVIADLLAAIKERR 691



 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 78/267 (29%), Gaps = 10/267 (3%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           YF  + +   RD      +L L          G+  WLP G   ++ +  + +E +   G
Sbjct: 191 YFTMLEEAKKRDHRKLGKELELF-CFDDDVGPGLPLWLPRGTVLIEELEKLAKETEFAGG 249

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRNDKAMIYGPTHEEVMTDIFRSH 121
              +  P L   ++++ SG    Y + M        D          T + +  D    +
Sbjct: 250 YDRVRTPVLARENMYLTSGHLPYYAESMFPPMELREDAKGSEGFIDFTLKRLSFDESEEY 309

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           ++         +        E           E       S                 S 
Sbjct: 310 LREAYRKAKGTHTSGSYVDMEAEFEEFFRAIPE-QQFGDASKIALERLFLDMGIDEAKSK 368

Query: 182 LRIFHRLGLKSIPMRAESG---PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           +    R  LK++           +        + LA+ G    +     + F +    + 
Sbjct: 369 IAPPDRYYLKAMNCPHHHKLFAAVPRSYRDLPLRLAEYGTCYRYEQSGEL-FGLMRVRSM 427

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNE 265
             +   +    EQ+ + + A ++++ +
Sbjct: 428 QMNDAHIYCTEEQFESEFRAVNEMYLK 454


>gi|4388929|pdb|1B76|A Chain A, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Atp
 gi|4388930|pdb|1B76|B Chain B, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Atp
 gi|4388931|pdb|1GGM|A Chain A, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Glycyl-Adenylate
 gi|4388932|pdb|1GGM|B Chain B, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
           With Glycyl-Adenylate
          Length = 442

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 79/466 (16%), Positives = 144/466 (30%), Gaps = 88/466 (18%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAII--REEQNRTGAIEMSVPTLQSADL 79
           R G I Q S      +G+Y + PLG +  +N+      R    R     +    L    +
Sbjct: 14  RRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLV 73

Query: 80  WVESGRYDSYGKEMLRLADRNDK-----------------------AMIYGPTHEEVMTD 116
              SG   ++   M+  A                            A +   T + +  +
Sbjct: 74  LHYSGHEATFADPMVDNAKARYWTPPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVN 133

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
                  + R L F   QI   FR+E+ PR  + R REF   +   F   P   ++ +  
Sbjct: 134 FKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVR-PGEDEYWHRY 192

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
                L+ +  +GL    +     P              T +         ++    ++ 
Sbjct: 193 WVEERLKWWQEMGLSRENLVPYQQPPESSA----HYAKATVDILYRFPHGSLELEGIAQR 248

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           TDF D+ S     E                                          ++S 
Sbjct: 249 TDF-DLGSHTKDQEALGI-------------------------------TARVLRNEHST 276

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII---------WPDSVAPF 347
              A      GK     +     G  R V A++  +   + +              +AP 
Sbjct: 277 QRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPI 336

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           K+++I +  +     +  +++ ARL  +G   V ++D G  IG  +   D +G P  V V
Sbjct: 337 KVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDTG-NIGKAYRRHDEVGTPFAVTV 395

Query: 407 GSKFV---SDSK------VEIKHRLTGIREDMSLEEVINYASHRFS 443
               +    D        V ++ R T  +  + ++E+  +   R  
Sbjct: 396 DYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLRERLR 441


>gi|223044100|ref|ZP_03614139.1| histidyl-tRNA synthetase [Staphylococcus capitis SK14]
 gi|222442494|gb|EEE48600.1| histidyl-tRNA synthetase [Staphylococcus capitis SK14]
          Length = 420

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/406 (14%), Positives = 115/406 (28%), Gaps = 19/406 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
             ++   + E        E+  P  +S +L+        D   KEM    D+ D+++   
Sbjct: 19  WRHIENKLDELMELYNYKEIRTPIFESTELFARGVGDSTDVVQKEMYTFKDKGDRSLTLR 78

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +        ++   N P   Y     FR E + +    +  +F ++        
Sbjct: 79  PEGTAAVVRSYIEHKMQGNPNQPVKLYYNGPMFRYERKQKGRYRQFNQFGVEA--IGAEN 136

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P         +   Y     +     I    +S        ++ +V         FCS  
Sbjct: 137 PSIDAEVLAMVMHIYESFGLKHLKLVINSIGDSES--RKEYNKALVNHFEPVIDTFCSDC 194

Query: 227 FMDFPIPSENTDFDDIISLNSIV-----------EQWTAPYAATSDVHNEKLFDSLPENK 275
                          I      +           +   A Y       ++     + +  
Sbjct: 195 QSRLHTNPMRILDCKIDRDKEAIKTAPRITDYLNDDSKAYYEQVKHHLDDLNIPYVEDPN 254

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            V          F           A T     G+ + +     G     +  A+      
Sbjct: 255 LVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLQLLDGPSETGIGFALSIERLL 314

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                    +   +   + I    +       K+   L K       D +  +I  Q   
Sbjct: 315 LALEEEGIELDIEENFDLFIVTMGEEADRYAVKLLNDLRKNDVKADKDYLNRKIKGQMKQ 374

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           AD L     +++G + + ++ + IK+  TG  E++ L+++INY   
Sbjct: 375 ADRLNAKYTIVIGDQELENNSIAIKNMTTGESENIQLDQLINYFKK 420


>gi|315425492|dbj|BAJ47154.1| threonyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
 gi|315427484|dbj|BAJ49088.1| threonyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
 gi|315427502|dbj|BAJ49105.1| threonyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
          Length = 608

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/419 (15%), Positives = 138/419 (32%), Gaps = 43/419 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGA--IEMSVPTLQSADLWVESGRYDSYGKEML 94
            G   + P G    D ++    +     G     +    L S +          +G+ M 
Sbjct: 212 SGHMHYGPEGTIIYDLISDYASKIVRELGFPVYFVKGTNLFSLESRPIREHASLFGQRMY 271

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSR 153
           ++ + + +  +           + R+ + SYR+LPF  +++   +R E R       R R
Sbjct: 272 KV-EVDGRPYVMRYAACFQQFALARNWVISYRSLPFGMFEVADSYRLEQRGELVLGFRLR 330

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +  M D + F      +     K+         +LG            +      E    
Sbjct: 331 KMSMPDLHVFCRDIPEALQIVEKIHDKIYSEIEKLGRDYY----SLYNLTSRKFFE---- 382

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               E + F  K       P   + + +  S   ++           + H   + D    
Sbjct: 383 ----ENRGFFQKLLKREKKPVLLSFYPENSSYYWVL---------NIEYH---IIDKFGR 426

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG--AMRVVAAVIES 331
            + +    I+VG+   FG         T+   DG+  Y  +    +     R + AV+++
Sbjct: 427 PREIGTVQIDVGNAERFG--------ITYVEKDGEKKYPVILHSALIGTVERYLYAVVDT 478

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           +        P  + P ++ ++ +    +       ++  +++K G  V  DD  E +  +
Sbjct: 479 ALSKTPPTLPTWLCPTQLRILPLN---EKYNKRAVQLAEKITKYGIRVDVDDRPETLAKK 535

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN--RPV 448
              A+    P    +G K      + I+ R     + M L+ ++        N   RP+
Sbjct: 536 VYEAETSWIPYVATLGPKEAKKGTLAIRIRGKKGVKQMRLKPLVKLIQKETENYPFRPL 594


>gi|313678636|ref|YP_004056376.1| glycine--tRNA ligase [Mycoplasma bovis PG45]
 gi|312950688|gb|ADR25283.1| glycine--tRNA ligase [Mycoplasma bovis PG45]
          Length = 458

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/434 (16%), Positives = 148/434 (34%), Gaps = 40/434 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE-----MSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG    +N+  + ++E       E     +    L +  +WV SG   ++   ++
Sbjct: 35  WDYGPLGSLLKENIKDLWKKEFI---YSEHNNFLIDSKILMNPKVWVTSGHVSNFNDPLI 91

Query: 95  RLA--------DRNDKAMIYGPTHEEVMTDIFRSH---IKSYRNLPFTFYQIQLKFRDEL 143
                      D+  + +      E +  +    +     S  +     +    KF    
Sbjct: 92  ENKVNGKRYRADKIIQEIDPSLVPESMTFEQMHDYLSKNVSEYDGSKCTWSEIRKFNLMF 151

Query: 144 RPRFGVMRS-REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
             + G++   +  +     +        K+              ++G            I
Sbjct: 152 ETKQGIIEGEKNLIYLRPETAQGIFVNFKNVLRSTRAKLPIGIGQVGKSFRNEVTPGNFI 211

Query: 203 GGDLSHEFI---VLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAA 258
                 E +   V  D  ++    +K         +     D+ + + +  +   + Y++
Sbjct: 212 FRTREFEQMELEVFHDPKDSDFLFNKYLYKAKDFATLLGIKDENVRIRAHEQDELSHYSS 271

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
            +            E   V+ R           T  SL     F           +    
Sbjct: 272 ATSDIEYLFPFGWGELLGVANRTDFDLKAHMQATGESLEY---FDPVTNSKLIPFVIEPS 328

Query: 319 IGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           IG  R++ A++  S+D + I           P SVAP+K +++ +        D  E+IY
Sbjct: 329 IGLDRLMLALLIDSYDEEAISENDSRIVLRMPKSVAPYKFAILPLVKK---LNDKAEEIY 385

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L K+   + +DD G  IG ++   D +G P  + V    ++D  + I++R + ++E +
Sbjct: 386 KELLKLNIAITYDDAG-SIGKRYRRQDSIGTPYCITVDYDSLNDECITIRNRDSMLQERI 444

Query: 430 SLEEVINYASHRFS 443
           S+ E+ N A + F 
Sbjct: 445 SISELYNLAKNDFK 458


>gi|299471018|emb|CBN78879.1| threonine--tRNA ligase [Ectocarpus siliculosus]
          Length = 704

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 3/151 (1%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            Q   RD      +  L     H  S G   +LP G +  + +   IR E  + G  E++
Sbjct: 391 EQAKKRDHRRVGVQQDLF--FFHPLSPGSAFFLPHGTRIYNRLMEFIRSEYWKRGYEEVT 448

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + + DLW +SG    Y   M R      +     P +      +F   +KS+R LP 
Sbjct: 449 TPNMYNMDLWEQSGHAAHYKDAMFRF-PVEGQEFGLKPMNCPGHCIMFSQGVKSWRELPL 507

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
            +    +  R+E+      +     +  D  
Sbjct: 508 RYADFGVLHRNEVFDAMERVHQCATVQLDFQ 538



 Score = 77.5 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/323 (10%), Positives = 85/323 (26%), Gaps = 18/323 (5%)

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
            +F+++ + R       +  +   +              +++   +        K     
Sbjct: 387 NEFQEQAKKRDHRRVGVQQDLFFFHPLSPGSAFFLPHGTRIYNRLMEFIRSEYWKRGYEE 446

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-- 254
             +  +      E    A   +  +F                    I  +  V+ W    
Sbjct: 447 VTTPNMYNMDLWEQSGHAAHYKDAMFRFPVEGQEFGLKPMNCPGHCIMFSQGVKSWRELP 506

Query: 255 -PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS---------LPMSATFKG 304
             YA    +H  ++FD++    + +   ++      F  KYS          P +A    
Sbjct: 507 LRYADFGVLHRNEVFDAMERVHQCATVQLDFQLPIRFNLKYSAGTEEHGDAKPEAAKPAE 566

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP-DSVAPFKISLINIKAHDQVCRD 363
             G +         +   R +   +E         +              I    Q   D
Sbjct: 567 GGGSEAKPAGEKRPVMIHRAMLGSLERMIAVLTEHYGGKWPFWLSPRQALIVPVAQKYND 626

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +  RL   G  V  +   + +  +        +   ++VG       +V +  R  
Sbjct: 627 YATNVKDRLHNAGFYVDVETSNKTLNKKVREGVTAKYNYILVVGEAEEEADEVNL--RGK 684

Query: 424 GIREDMSLEEVINYASHRFSNNR 446
           G +    + +++         ++
Sbjct: 685 GQQ---KVSDLMQMFQDLTDKHQ 704


>gi|228999191|ref|ZP_04158772.1| Histidyl-tRNA synthetase 2 [Bacillus mycoides Rock3-17]
 gi|229006738|ref|ZP_04164372.1| Histidyl-tRNA synthetase 2 [Bacillus mycoides Rock1-4]
 gi|228754599|gb|EEM04010.1| Histidyl-tRNA synthetase 2 [Bacillus mycoides Rock1-4]
 gi|228760536|gb|EEM09501.1| Histidyl-tRNA synthetase 2 [Bacillus mycoides Rock3-17]
          Length = 423

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 119/409 (29%), Gaps = 20/409 (4%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIY 106
               +    RE   R    E+  P  +  +L++       D   KEM    DR ++++  
Sbjct: 19  LWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRGERSLTL 78

Query: 107 GPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFD 164
            P     +   +  + +      P   Y I   FR E        R R+F+         
Sbjct: 79  RPEGTAPVVRSYVENKMYGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFGIEAIGS 135

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF---IVLADTGETQV 221
             P             Y  +  +     +    +          E          GE   
Sbjct: 136 NDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGD--AASRQAHREALIAHFEPRIGEFCS 193

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PE 273
            C       P+   +   D    L S     T      S  + EK+ + L         +
Sbjct: 194 DCQSRLEKNPLRILDCKKDRNHELMSTAPSITEYLNEESTTYYEKVQELLTMMGVPFEKD 253

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
              V         +F   ++     + T     G+ + +     G     +  A+     
Sbjct: 254 PNLVRGLDYYQHTVFEIMSEADGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAMSIERL 313

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                     +         + A     +D   KI   L K G  V  D +  ++ +QF 
Sbjct: 314 IMALKAENIELPIEHNIDCYVVALGDKAKDHAAKIAFDLRKAGLSVEKDYLDRKMKAQFK 373

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 374 SADRLNAKYVAVLGEDELDKGIINLKDMATGGQEEVALDVFASYVAEKL 422


>gi|315425261|dbj|BAJ46929.1| threonyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
          Length = 593

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/419 (15%), Positives = 138/419 (32%), Gaps = 43/419 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGA--IEMSVPTLQSADLWVESGRYDSYGKEML 94
            G   + P G    D ++    +     G     +    L S +          +G+ M 
Sbjct: 197 SGHMHYGPEGTIIYDLISDYASKIVRELGFPVYFVKGTNLFSLESRPIREHASLFGQRMY 256

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSR 153
           ++ + + +  +           + R+ + SYR+LPF  +++   +R E R       R R
Sbjct: 257 KV-EVDGRPYVMRYAACFQQFALARNWVISYRSLPFGMFEVADSYRLEQRGELVLGFRLR 315

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +  M D + F      +     K+         +LG            +      E    
Sbjct: 316 KMSMPDLHVFCRDIPEALQIVEKIHDKIYSEIEKLGRDYY----SLYNLTSRKFFE---- 367

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               E + F  K       P   + + +  S   ++           + H   + D    
Sbjct: 368 ----ENRGFFQKLLKREKKPVLLSFYPENSSYYWVL---------NIEYH---IIDKFGR 411

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG--AMRVVAAVIES 331
            + +    I+VG+   FG         T+   DG+  Y  +    +     R + AV+++
Sbjct: 412 PREIGTVQIDVGNAERFG--------ITYVEKDGEKKYPVILHSALIGTVERYLYAVVDT 463

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           +        P  + P ++ ++ +    +       ++  +++K G  V  DD  E +  +
Sbjct: 464 ALSKTPPTLPTWLCPTQLRILPLN---EKYNKRAVQLAEKITKYGIRVDVDDRPETLAKK 520

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN--RPV 448
              A+    P    +G K      + I+ R     + M L+ ++        N   RP+
Sbjct: 521 VYEAETSWIPYVATLGPKEAKKGTLAIRIRGKKGVKQMRLKPLVKLIQKETENYPFRPL 579


>gi|26553794|ref|NP_757728.1| glycyl-tRNA synthetase [Mycoplasma penetrans HF-2]
 gi|59798587|sp|Q8EW64|SYG_MYCPE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|26453801|dbj|BAC44132.1| glycyl-tRNA synthetase [Mycoplasma penetrans HF-2]
          Length = 462

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/438 (12%), Positives = 133/438 (30%), Gaps = 40/438 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG    +N+  +  +    ++     +    + +  +W  SG  D++   ++   
Sbjct: 34  WDFGPLGSLIKNNLKNLWLKHFIYSKKEMHLIDTNIILNPLVWKASGHIDNFSDPLIDCK 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR------ 151
           +   +        E   T    +       L       ++K  +  +  +  +R      
Sbjct: 94  ECKSRFRADKLILEN--TKEEINEQTDSDTLIKIISDNKIKCPNCKKSNWTEIRKFNLMF 151

Query: 152 ---------------SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
                           R    +  +      + ++       V  +    R  +      
Sbjct: 152 DTSIGVVDDKKDLVYLRPETAQGIFINFKNIQRTQRQKLPFGVGQIGKAFRNEITPGNFI 211

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +          F    D+ +      +    F   +     ++I  ++   E+     
Sbjct: 212 FRTREFEQMEIEYFCDKKDSPKVFDNFLESIKTFLFKTLKIHENNIKIIDYPKEELAHYS 271

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           + T D           E   ++ RG          +K S      +   + K+ +V    
Sbjct: 272 SRTVDFLY-NFPHGYSELWGLADRGEFDLTAHQNLSKKS----LEYLNEETKEKFVPSVI 326

Query: 317 YG-IGAMRVVAAVIESSHDGKGIIWPDSV------APFKISLINIKAHDQVCRDACEKIY 369
              +G  R++ A++  ++D + I   ++                +        D  E+I+
Sbjct: 327 EPSVGVERLLYAILIDAYDEEKIDEENNRVVLKLIPELAPYKFAVLPLSNKLNDKAEEIF 386

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L        +D  G  IG ++   D +G P  + V    + D  V I+ R +  +  +
Sbjct: 387 NNLILSNI-CTYDSSG-SIGKRYRRQDAIGTPYCITVDFDTLEDECVTIRDRDSMKQIRI 444

Query: 430 SLEEV-INYASHRFSNNR 446
            ++++ ++     F N +
Sbjct: 445 KIKDIDLSKVQELFKNAK 462


>gi|167755650|ref|ZP_02427777.1| hypothetical protein CLORAM_01165 [Clostridium ramosum DSM 1402]
 gi|167704589|gb|EDS19168.1| hypothetical protein CLORAM_01165 [Clostridium ramosum DSM 1402]
          Length = 457

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 61/433 (14%), Positives = 140/433 (32%), Gaps = 40/433 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+  +  +   +     +        +  +W  SG    +   ++   
Sbjct: 33  WDYGPLGVEMKNNIKQLWWKRFIQESPYNVGLDSAIFMNPRVWEASGHVGGFSDPLIDCK 92

Query: 98  D---RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD--ELRPRFGVMRS 152
           +   R+    +       V ++ + S                    +  ++R    +  +
Sbjct: 93  ECKTRHRADKLIEAYDPSVHSEGWSSEETVKYIKDHNIVCPNCGKSNFTDVRQFKLMFET 152

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG 204
           +  +++DA         +       F +  R   +         G            I  
Sbjct: 153 QMGVVEDAKDVVYLRPETAQGIFVNFKNIQRTSRKKVPFGIGQIGKAFRNEITPGNFIFR 212

Query: 205 DLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
               E     F    DT        K +    +       +++   +   E+ +    AT
Sbjct: 213 MREFEQMELEFFCKPDTDLEWFDYWKSYCQKFLFDLGLKEENLRFRDHEKEELSFYSKAT 272

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYG 318
            DV          E   ++ R           +K S      +      + +   +    
Sbjct: 273 CDV-EYNFPFGWGELWGIADRTNYDLTQHQNHSKKS----LEYLDPTTNEKYIPYVIEPS 327

Query: 319 IGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           +GA R+  +V+  S++ +          +    SVAPFK++++ +        D   +IY
Sbjct: 328 VGADRLFLSVLCDSYEEEILEDGETRVVMKLHPSVAPFKVAILPLTKK---QSDKATEIY 384

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L     +  +D  G+ IG ++   D +G P  V V    + D  V ++ R T  +  +
Sbjct: 385 GQL-AKYFNCEYDVAGQ-IGKRYRRQDAIGTPYCVTVDFDTMEDETVTVRDRDTMEQIRL 442

Query: 430 SLEEVINYASHRF 442
            + ++++Y S + 
Sbjct: 443 PINQLVDYISKKI 455


>gi|313115472|ref|ZP_07800937.1| glycyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622182|gb|EFQ05672.1| glycyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 473

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 68/446 (15%), Positives = 139/446 (31%), Gaps = 50/446 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +NV     ++  +     + +    + +   WV +G   S+     +  
Sbjct: 35  WDYGPLGVEFKNNVKKAWLKKFVQESPYNVGLDAAIIMNPQTWVTTGHVSSFSDPLLDCR 94

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP---RFGVMR 151
               R+    + G  H EV  D                    +  + +  P      + +
Sbjct: 95  ACKARHRADKLIGEEHPEVNVDAMSFDEMDAFIAEHEDIVCPVCGKHDFTPIRKFNLMFK 154

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPI------- 202
           +   + +D+ S       +       F +  R   R          +A    I       
Sbjct: 155 TAIGVTEDSSSTCYLRPETAQGIFVNFANIQRTTRRKLPFGVCQVGKAFRNEITPGNFTF 214

Query: 203 ----GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                  +  EF     T        KD+ +  + S     + +   +    +      A
Sbjct: 215 RTREFEQMECEFFCKPGTDLEWFAYWKDYCENWLLSLGIKKEHLRLRDHEPAELAFYSRA 274

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           T+D+     F    E   ++ R           +  SL     F     + +   +    
Sbjct: 275 TTDIEYAFPFTDWGELWGIADRTNYALTRHQEASGKSLEY---FDSETNEHYIPYVIEPS 331

Query: 319 IGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           +G  RV  A +  ++D                +    ++AP+K +++ +        +  
Sbjct: 332 LGCDRVALAFLCEAYDEEHLTDSKGKEDIRTVLHLHPALAPYKCAVLPLSKK---LGEKA 388

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV--------SDSKVE 417
            +I   LSK    V +DD G  IG ++   D +G P  + V    V        +D+ V 
Sbjct: 389 MEIRNELSKY-FMVDYDDTG-SIGKRYRREDEIGTPYCITVDFDTVGDEAKGIAADNCVT 446

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ R T  +  M + E+  Y   +  
Sbjct: 447 VRDRDTMEQVRMPISELKAYIESKIE 472


>gi|257456234|ref|ZP_05621431.1| glycyl-tRNA synthetase [Treponema vincentii ATCC 35580]
 gi|257446320|gb|EEV21366.1| glycyl-tRNA synthetase [Treponema vincentii ATCC 35580]
          Length = 450

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/439 (11%), Positives = 120/439 (27%), Gaps = 29/439 (6%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADL 79
           R G + Q S       G + + PLG +  +N+     +E  +     +      L    +
Sbjct: 17  RRGFVFQSSEIYGGQNGAWDYGPLGIELKNNIARAWWKEMTQLHNSIVGIDAAILMHPRV 76

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG  +++   ++       +        E++             ++       +   
Sbjct: 77  WEASGHVENFTDPLVDCKKCKARFRADQIDPEKLAKKECPDCGGELTDVRKFNLMFKTHI 136

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
                    ++  R    +  Y        S        ++ +    R  + +      +
Sbjct: 137 GP-TDDNSSLIYLRPETAQGIYVNYKNVAQSNRMKIPFGIAQIGKAFRNEIVTKNFIFRT 195

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                     F+      E   +  +         ++    D +  +       A YA  
Sbjct: 196 CEFEQMEMQFFVKPGTDDEWFNYWREQRW--AFYKKHGVRMDKLRWHRHGPDELAHYAKD 253

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     +      E + V  R                 M    +    + +   +     
Sbjct: 254 AYDIEYEFPMGFKELEGVHNRTNFDLTRH--TEFSGKDMQYIDQDNGNERYIPYIIETSA 311

Query: 320 GAMRVVAAVIESSH-------------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R +   +  S+                 + +   +AP  ++++ +   D    +  +
Sbjct: 312 GLTRNLLMFLCDSYEEQKVADKGNDDDWRTVLHFHPVIAPITVAVLPLMKKD-GLAELAQ 370

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            I A L +      +D  G  IG ++   D  G P  + V      D  V ++ R +  +
Sbjct: 371 DIQAELRE-DFRTDYDQAGA-IGKRYRRQDEAGTPFCITVDYDSKEDGTVTLRFRDSMDQ 428

Query: 427 EDMSLEEVINYASHRFSNN 445
             +   E+ N       N 
Sbjct: 429 VRVPRAELANRIRTEIKNY 447


>gi|313665392|ref|YP_004047263.1| glycine--tRNA ligase [Mycoplasma leachii PG50]
 gi|312949347|gb|ADR23943.1| glycine--tRNA ligase [Mycoplasma leachii PG50]
          Length = 456

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/431 (12%), Positives = 135/431 (31%), Gaps = 33/431 (7%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  + +  +  +   +   + +      + ++ +W  SG  D +     +  
Sbjct: 32  WDYGPLGCEVKNKLKKVWWDFFIKKNPLNIGLDSSIILNSKVWKASGHVDGFNDPLIDCK 91

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD--ELRPRFGVMRS 152
               R     +       + T I  +               + + +D  ++R    + ++
Sbjct: 92  NCKSRWRADKLIEEFDPSINTGIMSNLQLEEYINQNNIVCKKCQKKDFTQIRKFALMFKT 151

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAE 198
            + +++D  S       +       F +  R                 R  +        
Sbjct: 152 NQGVLEDDSSIVYLRPETAQGIFINFKNVQRSMRKKLPFGIGQIGKSFRNEITPGNFIFR 211

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +          F    D+ +   +  +    F     + D ++     ++ ++  A YA 
Sbjct: 212 TREFEQMELEFFFDPNDSNDWFKYWLEQIEIFLTQKISLDKNNYKIRENLKDEL-AHYAL 270

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
            +            E   +S R      +       S       K  + +     +    
Sbjct: 271 KTSDIEFNFPFGWGELWGISHRSDFDLKVHQ---DLSKEDLTVLKEENNQKILANVIEPS 327

Query: 319 IGAMRVVAAVI------ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           +G  R++ A+       E   +    I            + I    +       +++  L
Sbjct: 328 VGVERLMLAIFWQAYTEEQLEENNSRIVLKLPYNLAPYQVAITPLSKQLNQNANQLFLEL 387

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K   D  +D+ G  IG ++   D +G P  +    + + D KV I++R T  +E + + 
Sbjct: 388 LK-DFDAVYDETG-NIGKRYRRQDAIGTPFVITYDFQTLEDQKVTIRYRDTMKQERILIS 445

Query: 433 EVINYASHRFS 443
           ++ ++ + +F+
Sbjct: 446 QLKDFLNSQFN 456


>gi|229135227|ref|ZP_04264026.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST196]
 gi|228648269|gb|EEL04305.1| Histidyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST196]
          Length = 476

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 125/414 (30%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    R+   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGSVELWQYIEGQARDICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L S     T      S V+ +K+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMSTAPSITEYLNEDSAVYYDKVQELLTMMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDRAAKVAFDLRKAGLSVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLNAKYVAVLGEDELDKGIINLKDMATGGQEEVALDVFASYVAEKL 475


>gi|160943130|ref|ZP_02090367.1| hypothetical protein FAEPRAM212_00610 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445599|gb|EDP22602.1| hypothetical protein FAEPRAM212_00610 [Faecalibacterium prausnitzii
           M21/2]
          Length = 473

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 68/446 (15%), Positives = 140/446 (31%), Gaps = 50/446 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +NV     ++  +     + +    + +   WV +G   S+     +  
Sbjct: 35  WDYGPLGVEFKNNVKKAWLKKFVQESPYNVGLDAAIIMNPQTWVTTGHVSSFSDPLLDCR 94

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP---RFGVMR 151
               R+    + G  H EV  D                    +  + +  P      + +
Sbjct: 95  ACKARHRADKLIGEEHPEVNVDAMSFDEMDAFIAEHEDIVCPVCGKHDFTPIRKFNLMFK 154

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPI------- 202
           +   + +D+ S       +       F +  R   R          +A    I       
Sbjct: 155 TAIGVTEDSSSTCYLRPETAQGIFVNFANIQRTTRRKLPFGVCQVGKAFRNEITPGNFTF 214

Query: 203 ----GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                  +  EF     T        KD+ +  + S     + +   +    +      A
Sbjct: 215 RTREFEQMECEFFCKPGTDLDWFAYWKDYCENWLLSLGIKKEHLRLRDHEPAELAFYSRA 274

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           T+D+     F    E   ++ R           +  SL     F     + +   +    
Sbjct: 275 TTDIEYAFPFTDWGELWGIADRTNYDLTRHQEASGKSLEY---FDSETNEHYIPYVIEPS 331

Query: 319 IGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           +G  RV  A +  ++D                +    ++AP+K +++ +        +  
Sbjct: 332 LGCDRVALAFLCEAYDEEHLTDSKGKEDIRTVLHLHPALAPYKCAVLPLSKK---LGEKA 388

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV--------SDSKVE 417
            +I   LSK    V +DD G  IG ++   D +G P  + V    V        +D+ V 
Sbjct: 389 MEIRNELSKY-FMVDYDDTG-SIGKRYRREDEIGTPFCITVDFDTVGDEAKGIAADNCVT 446

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ R T  +  M + E+ +Y   +  
Sbjct: 447 VRDRDTMEQVRMPISELKSYIESKIE 472


>gi|291320191|ref|YP_003515452.1| glycyl tRNA synthetase [Mycoplasma agalactiae]
 gi|290752523|emb|CBH40495.1| Glycyl tRNA synthetase (Glycine tRNA ligase) [Mycoplasma
           agalactiae]
          Length = 458

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 73/460 (15%), Positives = 151/460 (32%), Gaps = 44/460 (9%)

Query: 18  AEIASHKLMLRT-GMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNRTGAIE-- 68
           A I +H   L+  G + Q S    G+   + + PLG    +N+  + ++E       E  
Sbjct: 9   ASIINH---LKATGFVFQGSEIYGGLANTWDYGPLGSLLKENIKDLWKKEFI---YSEHN 62

Query: 69  ---MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR----SH 121
              +    L +  +WV SG   ++   ++       +        E   + I        
Sbjct: 63  NFLIDSKILMNPKVWVTSGHVSNFNDPLIENKVNGKRYRADKIIQEIDSSLIPEAMTFKQ 122

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           +  Y     T Y        E+R    +  +++ +++   S       +       F + 
Sbjct: 123 MHEYLVKNVTEYDNSKCNWSEIRKFNLMFETKQGIIEGEKSLIYLRPETAQGIFVNFKNV 182

Query: 182 LRIFH--------RLGLKSIPMRAESGPIGGDLSHEFI---VLADTGETQVFCSKDFMDF 230
           LR           ++G            I      E +   V  D  +++   +K     
Sbjct: 183 LRSTRAKLPIGIGQVGKSFRNEVTPGNFIFRTREFEQLELEVFHDPKDSESIFNKYLNKC 242

Query: 231 PIPSENT-DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
              +      D+ I + +  +   + Y++ +            E   V+ R         
Sbjct: 243 KTFANLVGIKDENIRIRAHEQDELSHYSSATSDIEYLFPFGWGELLGVANRTDFDLKAHM 302

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD------GKGIIWPDS 343
             T  SL     F           +    +G  R++ A++  S+D          I    
Sbjct: 303 QATGESLEY---FDPVTNSKLIPYVIEPSMGLDRLMLALLIDSYDEELVSENDTRIVLKV 359

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
                     I    +   +  E+IY +L K+   + +DD G  IG ++   D +G P  
Sbjct: 360 PNAVAPYKFAILPLVKKLNEKAEEIYKQLLKLNIPITYDDAG-SIGKRYRRQDSIGTPYC 418

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + +    ++D  + I++R +  +E +S+  +  +A   F 
Sbjct: 419 ITIDYDSLNDECITIRNRDSMSQERISISSLYEFAQKTFK 458


>gi|311744086|ref|ZP_07717892.1| glycyl-tRNA synthetase beta subunit [Aeromicrobium marinum DSM
           15272]
 gi|311313216|gb|EFQ83127.1| glycyl-tRNA synthetase beta subunit [Aeromicrobium marinum DSM
           15272]
          Length = 462

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/437 (13%), Positives = 128/437 (29%), Gaps = 44/437 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+           R   + +    +    +W  SG   ++   ++   
Sbjct: 33  WDYGPLGVELKENIKRQWWRTMVQGRDDVVGLDSSVVLPPAVWEASGHLSAFVDPLVECL 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + +        E            +             K +  E +   G++++    
Sbjct: 93  SCHRR-YRQDHLQEAYAEKKGLDDPDAVGMDLLVCANCGTKGQWTEPKMFNGLLKTHLGP 151

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLSH 208
           ++ A         +       F   +    R         G            I      
Sbjct: 152 VESAEGLHYLRPETAQGIFVNFAQVMTSSRRKPPFGIGQIGKSFRNEITPGNFIFRTREF 211

Query: 209 EFIVL-------ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           E + +       AD    + +  +    +         D++       E+ +     T D
Sbjct: 212 EQMEMEYFVAPGADEEAHEYWLGERMRWYT--DLGIAADNLRFFEHPAEKLSHYAKRTVD 269

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKG-ADGKDHYVQMGSYGI 319
           +     F      +     G+     F   T  S       +     G   +  +     
Sbjct: 270 IEYRFGFQGSEWGELE---GVANRTDFDLSTHSSHSGKDLRYFDQESGDRWFPYVIEPAA 326

Query: 320 GAMRVVAAVIESSH-------------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++                 +     +AP K++++ + + ++    A  
Sbjct: 327 GVNRSMMAFLVDAYAEDEAPNSKGGVDTRTVLRLDPRLAPCKVAVLPL-SRNEQLSPAAR 385

Query: 367 KIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            +   L   G  +V +DD    IG ++   D +G P  V V    + D  V I+ R +  
Sbjct: 386 SLATELR--GYWNVDFDDSAA-IGKRYRRQDEIGTPFCVTVDFDTLDDQAVTIRERDSMQ 442

Query: 426 REDMSLEEVINYASHRF 442
           +E ++L +V  + + R 
Sbjct: 443 QERVALTQVREWLAARL 459


>gi|289619828|emb|CBI54111.1| unnamed protein product [Sordaria macrospora]
          Length = 542

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 80/247 (32%), Gaps = 19/247 (7%)

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F+   +    +   +          +      +    +  E++   Y  T       +  
Sbjct: 195 FLRAREFMWQEGHTAHLTEQAAGEEQLLAVPVVRGRKTEAEKFAGGYYTT------TVEG 248

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAV 328
            +P N     RGI+       G  +S     T +    K  ++ +     G + RV+  +
Sbjct: 249 YIPSNG----RGIQGATSHCLGQNFSKMFDITVEDPAEKGKHIHVWQNSWGLSTRVIGVM 304

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFW 381
           +    D KG++ P  +A  +  LI +                  +++ A L K G     
Sbjct: 305 VMIHGDDKGLVLPPRIAKIQSILIPVGLTAKMSAEEKDAHMKKVDELLATLKKAGVRTDV 364

Query: 382 DDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D   G     +F   +L G PL++  G K  +   +    R TG +  + + E+      
Sbjct: 365 DTREGYTPAWKFNDWELKGVPLRIEFGPKDAAKDVISYARRDTGEKGTIPIAELTTKVPE 424

Query: 441 RFSNNRP 447
                + 
Sbjct: 425 LLETIQQ 431



 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 7/153 (4%)

Query: 27  LRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVES 83
           L+  +I  ++   G +   P      + +    +E  +  G  E + P   S   L  E 
Sbjct: 66  LKAELIEYYTEISGFFIMRPATMYIWNVIRKWFQEHIDELGVEETNFPMFLSQKSLEKEK 125

Query: 84  GRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +    DK +       PT E VM   +   I+S+R+LPF   Q     
Sbjct: 126 EHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYAKWIRSHRDLPFRLNQWNSVV 185

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
           R E +     +R+REF+ ++ ++  LT + +  
Sbjct: 186 RWEAKQTTPFLRAREFMWQEGHTAHLTEQAAGE 218


>gi|229169146|ref|ZP_04296861.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH621]
 gi|228614374|gb|EEK71484.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH621]
          Length = 476

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 125/414 (30%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    R+   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGSVELWQYIEGQARDICRRYNYKEIRTPMFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALI-AHFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L S     T      S V+ +K+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMSTAPSITEYLNEDSAVYYDKVQELLTTMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDRAAKVAFDLRKAGLSVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLNAKYVAVLGEDELDKGIINLKDMATGGQEEVALDVFASYVAEKL 475


>gi|311895944|dbj|BAJ28352.1| putative glycyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 460

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 59/432 (13%), Positives = 133/432 (30%), Gaps = 36/432 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           + + PLG +  +N+           R   + +    + + ++W  SG   ++   +    
Sbjct: 33  WDYGPLGVELKENIKRQWWRAMVTAREDVVGLDSSVILAREVWEASGHVATFNDPLTECL 92

Query: 97  -----------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
                       +  +      P +     +      K     P  F  +          
Sbjct: 93  SCHKRFRADHLEEAYEAKHGKVPANGLADINCPNCGNKGAFTEPKEFSGMLKTHLGVTED 152

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+   R    +  ++     + +        ++ +    R  +        +      
Sbjct: 153 AAGLAYLRPETAQGIFTNFRAVQTTSRKKPPFGIAQVGKSFRNEITPGNFIFRTREFEQM 212

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              EF V     ET      +             +++       E+ +     T D+   
Sbjct: 213 EM-EFFVKPGEDETWHEYWLEQRWNWYVDLGLRTENMRFFEHPKEKLSHYAKRTVDIEYR 271

Query: 266 KLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             F      E + V+ R      +    +++S      F     + ++  +     G  R
Sbjct: 272 FNFGGSEFSELEGVANRTDYDLTVH---SEHSGQDLKYFDQDANERYFPYVIEPAAGLNR 328

Query: 324 VVAAVIES-------------SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + A +                    G+     +AP K++++ + + +         + A
Sbjct: 329 AMLAFLLDAYFEDEAPNAKGVMEKRVGMRLDPRLAPVKVAVLPL-SRNADLSPKARGLAA 387

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L     +V +DD G  IG ++   D +G P  V V    + D+ V ++ R T  +E +S
Sbjct: 388 DLRSAW-NVEFDDAGA-IGKRYRRQDEIGTPFCVTVDFDTLEDNAVTVRDRDTMAQERVS 445

Query: 431 LEEVINYASHRF 442
           L++V +Y + R 
Sbjct: 446 LDQVKSYLATRL 457


>gi|169829346|ref|YP_001699504.1| histidyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|229558694|sp|B1HV72|SYH_LYSSC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|168993834|gb|ACA41374.1| Histidyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
          Length = 422

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 60/405 (14%), Positives = 121/405 (29%), Gaps = 16/405 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V AIIR+        E+  P  +  DL+        D   KEM    DR  +++   
Sbjct: 20  WQKVEAIIRDICRVYRYNEIRTPIFEQTDLFARGVGETTDVVQKEMYTFEDRGGRSLTLR 79

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDL 165
           P +   +        +    + P     +   FR E +      R R+F+          
Sbjct: 80  PENTAGVVRAYVEHKMFGAPDQPVKLSYLGPMFRYERQQAG---RYRQFVQFGVEAIGSA 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            P             Y     +         G K       +  +     H     +D  
Sbjct: 137 DPAIDAEVIALAMDVYESAGLKDLKLVINSLGDKETRDTHRTALLQHFEPHIHEFCSDCQ 196

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLPENKR 276
                     +D  +  E+       +L   + + +A Y A    + + L    + +   
Sbjct: 197 NRLQKNPLRILDCKVDREHPLMKTAPALTEFLTEESAAYFAQVKSYLDTLGITYVVDPNL 256

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V          F   +  S   + T     G+ + +     G     +  A+        
Sbjct: 257 VRGLDYYNHTTFEIMSTASGFGAITTLCGGGRYNGLVQEIGGPDVPGIGFALSIERLLLA 316

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                  +       + I A  +  +    ++ +     G     D +  ++ +Q   AD
Sbjct: 317 LEAEGVELDTASGLDVYIIAMGEDAKQKAVELTSTFRAKGLATEMDYLDRKMKAQMKSAD 376

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            LG    +++G   + +    +KH  +G +  ++  E++NY S +
Sbjct: 377 RLGAKYTIVLGETELEEQAAAVKHMESGEQHKVAFSELVNYLSQQ 421


>gi|295102728|emb|CBL00273.1| glycyl-tRNA synthetase [Faecalibacterium prausnitzii L2-6]
          Length = 473

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 69/446 (15%), Positives = 139/446 (31%), Gaps = 50/446 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +NV     ++  +     + +    L +   WV +G    +     +  
Sbjct: 35  WDYGPLGVEFKNNVKKAWLKKFVQESPYNVGLDAAILMNPQTWVTTGHVAGFSDPLLDCR 94

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP---RFGVMR 151
               R+    + G  H EV  D                    +  + +  P      + +
Sbjct: 95  ACKARHRADKLIGDEHPEVNVDAMSFDEMDAFIAEHEDVVCPVCGKHDFTPIRKFNLMFK 154

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPI------- 202
           +   + +D+ S       +       F +  R   R          +A    I       
Sbjct: 155 TAIGVTEDSSSTCYLRPETAQGIFVNFANIQRTTRRKLPFGVCQVGKAFRNEITPGNFTF 214

Query: 203 ----GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                  +  EF     T        KD+ +  + S     + +   +    +      A
Sbjct: 215 RTREFEQMECEFFCKPGTDLEWFSYWKDYCENWLLSLGIKKEHLRLRDHEPAELAFYSRA 274

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           T+D+     F    E   ++ R           +  SL     F     + +   +    
Sbjct: 275 TTDIEYAFPFTDWGELWGIADRTNYDLTRHQEASGKSLEY---FDSETNEHYIPYVIEPS 331

Query: 319 IGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           +G  RV  A +  ++D                +    ++AP+K +++ +        D  
Sbjct: 332 LGCDRVALAFLCEAYDEEHLTDSKGKEDVRTVLHLHPALAPYKCAVLPLSKK---LGDKA 388

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV--------SDSKVE 417
            +I   LSK    V +DD G  IG ++   D +G P  + V    V        +D+ V 
Sbjct: 389 MEIRNELSKY-FMVDYDDTG-SIGKRYRREDEIGTPYCITVDFDTVGDEAKGIAADNCVT 446

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ R T  +  M + E+ +Y   +  
Sbjct: 447 VRDRDTMEQVRMPISELKSYIESKIE 472


>gi|126178716|ref|YP_001046681.1| threonyl-tRNA synthetase [Methanoculleus marisnigri JR1]
 gi|166225444|sp|A3CTJ9|SYT_METMJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|125861510|gb|ABN56699.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Methanoculleus
           marisnigri JR1]
          Length = 611

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/406 (15%), Positives = 130/406 (32%), Gaps = 45/406 (11%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           W+P G+   D ++  +  +    G + +  P +        +     +G+   R     +
Sbjct: 219 WMPRGKLIRDLLSDYVLTQVLDYGGMPVETPVMYDLGDAAIAEHAAKFGERQYRFK-SGN 277

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSREFLMKD 159
           + M+        M  I      S   LP   Y++    FR E +    G+ R R F M D
Sbjct: 278 RDMMLRFAACFGMFSIMHDMHISPNTLPMKLYELSTYSFRHEQKGEVIGLKRLRAFTMPD 337

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            ++     +G+  ++ +      +    L    + +   +        +E  V    G  
Sbjct: 338 MHTLCRDMDGALTAFEEQLAIGWKTGEDLETPLVGVFRCTRDFF--EQYELWV---KGIV 392

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                   ++  + SE T +                        +    D+         
Sbjct: 393 AKSGVPMLIE--VLSERTHYWIAKV-------------------DLAAIDAQGRPIENPT 431

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGI 338
             I+V     F  KY       +     + H   +     G   RV+ A++E +   +  
Sbjct: 432 VQIDVESADRFDIKY-------YAPDGTEVHPPILHCSPTGSIERVICAMLEGTAAQEVP 484

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            +P  +AP ++ L+ +    +      E+I  RL+  G     DD  E +  +   A + 
Sbjct: 485 SFPTWLAPTQVRLVPVA---ERHICFAEEIDTRLNAAGIRADVDDRDESVNKKIREAGMD 541

Query: 399 GFPLQVIVGSKFVSDS--KVEIKHRLTGI---REDMSLEEVINYAS 439
             P   ++G +        V I+         +E M+  E++    
Sbjct: 542 WVPYVAVIGDQEAETGRLMVTIRKLSEKKKPFKESMTESELVQAVK 587


>gi|229163352|ref|ZP_04291304.1| Histidyl-tRNA synthetase 2 [Bacillus cereus R309803]
 gi|228620133|gb|EEK77007.1| Histidyl-tRNA synthetase 2 [Bacillus cereus R309803]
          Length = 423

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 125/414 (30%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 13  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 72

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 73  ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 130 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 188

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L S     T      S V+ +K+ + L     
Sbjct: 189 GEFCSDCQSRLEKNPLRILDCKKDRNHELMSTAPSITEYLNEDSAVYYDKVQELLTMMDV 248

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 249 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 308

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 309 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 369 KAQFKSADRLNAKFVAVLGEDELDKGVINLKDMATGGQEEVALDVFASYVAEKL 422


>gi|237785257|ref|YP_002905962.1| glycyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758169|gb|ACR17419.1| glycyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 460

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/434 (13%), Positives = 129/434 (29%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVN-AIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           + + PLG +  +N+     R      G  + +    +   ++WV SG   ++   ++   
Sbjct: 33  WDYGPLGVELKENIKKQWWRTFVQSRGDMVGLDSSIILPREVWVSSGHVKTFTDPLVESL 92

Query: 97  -ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  +A      +E        + +    +              E +   G+M++   
Sbjct: 93  HTHKRYRADHLIEAYEAKHGHPPANGLADVPDPETGQPGEWT----EPQMFSGLMKTYLG 148

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLS 207
            + +          +       F +      +         G            I     
Sbjct: 149 PVDNEEGLHYLRPETAQGIFVNFKNVQTTSRKKPPFGIGQLGKAFRNEITPGNFIFRTRE 208

Query: 208 HEFI---VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            E +         +      +   D      +   D        V +    + +   +  
Sbjct: 209 FEQMEIEYFVPPADAPQHFDRWVEDCWNWFVDLGIDPDHLRKFDVPEDERAHYSDRTIDL 268

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           E  F            GI     F   +  K S    + F    G+ +   +     G  
Sbjct: 269 EYQFGFAGSGWGELM-GIANRTDFDLQSHIKGSGEDLSFFAQPTGERYVPYVIEPSFGLT 327

Query: 323 RVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           R + A +  ++                       +AP K++++ +   D       EK+ 
Sbjct: 328 RSLMAFLIDAYHEDEAPNAKGGVDKRTVLRLDRRLAPVKVAVLPLSKKD-TLTPTAEKVA 386

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L  +  +V +D  G  IG ++   D +G P  V V    + D  V ++ R T  +E +
Sbjct: 387 QDLRGLW-NVDYDISGA-IGRRYRRQDEIGTPFCVTVDFDTLDDHAVTVRERDTMEQERV 444

Query: 430 SLEEVINYASHRFS 443
           S++++  Y + R +
Sbjct: 445 SIDKLQGYLAERLA 458


>gi|294787454|ref|ZP_06752707.1| glycine--tRNA ligase [Parascardovia denticolens F0305]
 gi|315226976|ref|ZP_07868764.1| glycyl-tRNA synthetase beta subunit [Parascardovia denticolens DSM
           10105]
 gi|294484810|gb|EFG32445.1| glycine--tRNA ligase [Parascardovia denticolens F0305]
 gi|315121108|gb|EFT84240.1| glycyl-tRNA synthetase beta subunit [Parascardovia denticolens DSM
           10105]
          Length = 502

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 72/470 (15%), Positives = 148/470 (31%), Gaps = 47/470 (10%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHS---KG---IYSWLPLGQKALDNVNAIIREEQ--NRT 64
           E+  +A     +L  R G +        G    + + PLG    DN+           R 
Sbjct: 25  ESKLEAVT---QLAKRRGFVFPAGEIYGGTRSAWDYGPLGVALKDNIKHEWWRSMVTTRG 81

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
             + +    +  +++WV SG    +   ++   +  +    +   H E   +       S
Sbjct: 82  DVVGVDTSVILPSEVWVASGHVKVFNDPLV---ECLNCHKRFRADHLEEHFEAKHGRQPS 138

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
                       +    E R    ++R+    ++D  S       +       F   L  
Sbjct: 139 GMLEIPCPACGTVGKWTEPRDFNMMLRTHLGPVEDENSLHYLRPETAQGIFVDFAQVLGT 198

Query: 185 FHR--------LGLKSIPMRAESGPIGG-----DLSHEFIVLADTGETQVFCSKDFMDFP 231
             +        +G            I        +  EF V     E       D     
Sbjct: 199 SRQKPPFGIANMGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEEWHQYWIDARRAW 258

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFY 289
                 + D++       E+ +     T D+  +  F      E + ++ R         
Sbjct: 259 YIDLGVNPDNLRLYEHPKEKLSHYSKRTVDIEYKFGFQGSDWGELEGIANRTDYDLSAH- 317

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII---------- 339
             +++S    + F  A G+ +   +     G  R + A +  ++D               
Sbjct: 318 --SRHSGKDLSYFDPASGERYVPYVIEPAAGLTRSLMAFLVDAYDVDEAPNTKGGVDTRT 375

Query: 340 ---WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                  ++P K +++ + +     ++   ++   L +   D+ +D+ G  IG ++   D
Sbjct: 376 VLRLDPRLSPVKAAVLPL-SKQPDLQNIAHRLADELREDDWDIDYDEAGA-IGRRYRRQD 433

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +G PL V V    V D  V I+ R +  +E ++L  V +Y      + R
Sbjct: 434 EIGTPLCVTVDFDTVDDQAVTIRERDSMKQERVALGRVADYVGSFIRDKR 483


>gi|261367209|ref|ZP_05980092.1| glycine--tRNA ligase [Subdoligranulum variabile DSM 15176]
 gi|282570808|gb|EFB76343.1| glycine--tRNA ligase [Subdoligranulum variabile DSM 15176]
          Length = 473

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 72/462 (15%), Positives = 147/462 (31%), Gaps = 56/462 (12%)

Query: 30  GMI---HQHSKGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWV 81
           G I    +   G+   + + PLG +  +NV     ++  +     + +    L +   WV
Sbjct: 19  GFIYPGSEIYGGLANSWDYGPLGVEFKNNVKKAWLKKFVQESPYNVGLDAAILMNPQTWV 78

Query: 82  ESGRYDSYGKEM-----LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            +G   S+   +      +   R DK +      + V  D                    
Sbjct: 79  TTGHVASFSDPLLDCRACKSRHRADKLIADCEQGKNVDVDAMTFDEMDAFIASHEEVVCP 138

Query: 137 LKFRDELRP---RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--LGLK 191
           +  + +  P      + ++   + +D+ S       +       F +  R   R      
Sbjct: 139 VCGKHDFTPIRKFNLMFKTAIGVTEDSSSTCYLRPETAQGIFVNFANIQRTTRRKLPFGV 198

Query: 192 SIPMRAESGPI-----------GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
               +A    I              +  EF    +T        KDF    + S     +
Sbjct: 199 CQVGKAFRNEITPGNFTFRTREFEQMECEFFCKPNTDLEWFAYWKDFCKNWLLSLGIKEE 258

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           ++   +    +      AT+D+     F    E   ++ R           +  SL    
Sbjct: 259 NLRLRDHEAAELAFYSRATTDIEYAFPFTDWGELWGIADRTNYDLSRHQEASGKSLEY-- 316

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-------------GKGIIWPDSVAPF 347
            F     + +   +    +G  RV  A +  ++D                +     +APF
Sbjct: 317 -FDPETNEHYIPYVIEPSLGCDRVALAFLCEAYDEEHLVDAKGKEDVRTVLHLHPFLAPF 375

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           K +++ +        D   +I   L      V +DD G  IG ++   D +G PL + V 
Sbjct: 376 KCAVLPLSKK---LGDKAMEIRNEL-AKDFMVDYDDAG-SIGKRYRRQDEIGTPLCITVD 430

Query: 408 SKFV------SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + V      +D+ V ++ R T  +  + + E+ +Y + + +
Sbjct: 431 FQTVGDDKVEADNCVTVRDRDTMEQVRLPISELKDYIAKKVA 472


>gi|158320290|ref|YP_001512797.1| glycyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
 gi|254781873|sp|A8MG73|SYG_ALKOO RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|158140489|gb|ABW18801.1| glycyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 462

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 64/457 (14%), Positives = 152/457 (33%), Gaps = 56/457 (12%)

Query: 30  GMI---HQHSKGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWV 81
           G I    +   G+   + + PLG +  +NV     ++  +     + +    L +   W 
Sbjct: 18  GFIFPGSEIYGGLANTWDYGPLGVELKNNVKKAWWKKFIQQSPYNVGLDAAILMNPKTWE 77

Query: 82  ESGRYDSYGKEMLRLA--------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            SG    +   ++           D+  +  ++    E V+       +K+Y        
Sbjct: 78  ASGHIGGFSDPLMDCKKCRSRFRADKLIEDYMHSQNEETVVDGWSNQQMKTYIEEKEIVC 137

Query: 134 QIQLKFRD-ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH------ 186
                    ++R    + ++ + + +D+ +       +       F + LR         
Sbjct: 138 PECGAKDFTDIRQFNLMFKTFQGVTEDSSTEIFLRPETAQGIFVNFKNVLRTSRKKVPFG 197

Query: 187 --------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                   R  +        +          F    +  E   +  +   ++ +    T 
Sbjct: 198 IGQIGKSFRNEITPGNFTFRTREFEQMELEFFCKPGEDLEWFNYWKEFCKNWLLNLNLT- 256

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
            ++ + +    E+  + Y+  +     +      E   V+ R       F    ++S   
Sbjct: 257 -EENLRIRDHAEEELSHYSKATTDFEYRFPFGWGELWGVADR-----TDFDL-KQHSEHS 309

Query: 298 -MSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW---------PDSVAP 346
               T++     + +        +G  RV  A +  ++D + I             ++AP
Sbjct: 310 GEDFTYQDPITNEKYVPYCIEPSVGVDRVALAFLVDAYDEEVIDEKDTRVVLRLHPALAP 369

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           FK +++ +       +D   ++Y  LS+    V +D+ G  IG ++   D +G P  +  
Sbjct: 370 FKAAVLPLTKK---LKDQALELYETLSE-NYMVDYDEAG-SIGKRYRRHDEIGTPFCITF 424

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               + D  V I+HR +  +E + + E+  Y + +  
Sbjct: 425 DYDSLEDQCVTIRHRDSMEQERIQISELTTYLNEKLK 461


>gi|83319862|ref|YP_424478.1| glycyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|123753722|sp|Q2SRY5|SYG_MYCCT RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|83283748|gb|ABC01680.1| glycyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 456

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/431 (12%), Positives = 135/431 (31%), Gaps = 33/431 (7%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  + +  +  +   +   + +      + ++ +W  SG  D +     +  
Sbjct: 32  WDYGPLGCEVKNKLKKVWWDFFVKKNPLNIGLDSSIILNSKVWKASGHIDGFNDPLIDCK 91

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD--ELRPRFGVMRS 152
               R     +       + T I  +               + + +D  ++R    + ++
Sbjct: 92  NCKSRWRADKLIEEFDPSINTGIMSNLQLEEYINQNNIVCKKCQKKDFTQIRKFALMFKT 151

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAE 198
            + +++D  S       +       F +  R                 R  +        
Sbjct: 152 NQGVLEDDSSIVYLRPETAQGIFINFKNVQRSMRKKLPFGIGQIGKSFRNEITPGNFIFR 211

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +          F    D+ +   +  +    F     + D ++     ++ ++  A YA 
Sbjct: 212 TREFEQMELEFFFDPNDSNDWFKYWLEQIEIFLTQKISLDKNNYKIRENLKDEL-AHYAL 270

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
            +            E   +S R      +       S       K  + +     +    
Sbjct: 271 KTSDIEFNFPFGWGELWGISHRSDFDLKVHQ---NLSKEDLTVLKEENNQKILANVIEPS 327

Query: 319 IGAMRVVAAVI------ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           +G  R++ A+       E   +    I            + I    +       +++  L
Sbjct: 328 VGVERLMLAIFWQAYTEEQLEENNSRIVLKLPYNLAPYQVAITPLSKQLNQNANQLFLEL 387

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K   D  +D+ G  IG ++   D +G P  +    + + D KV I++R T  +E + + 
Sbjct: 388 LK-DFDAIYDETG-NIGKRYRRQDAIGTPFVITYDFQTLEDQKVTIRYRDTMKQERILIS 445

Query: 433 EVINYASHRFS 443
           ++ ++ + +F+
Sbjct: 446 QLKDFLNSQFN 456


>gi|54309339|ref|YP_130359.1| putative tRNA synthetase [Photobacterium profundum SS9]
 gi|46913775|emb|CAG20557.1| putative tRNA synthetase [Photobacterium profundum SS9]
          Length = 145

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +   V +    +G++     ++   + G    W        +++           +  ++
Sbjct: 7   RHTPVMIHRAILGSLERFIGILIEEYAGFFPTWLSPQQAVVMNIT------DSQSEYVQE 60

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I  +L K G  V  D   E+IG +     L   P  ++ G K V   ++ ++ R      
Sbjct: 61  IVKKLQKCGIRVNADLRNEKIGFKIREHTLKRVPYMLVCGDKEVEAGEIAVRTRKGKDLG 120

Query: 428 DMSLEEVINYASHRFSNNR 446
            + ++E++ +     S+ +
Sbjct: 121 KLKIDELVAFLQQEISSRK 139


>gi|167948462|ref|ZP_02535536.1| threonyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 170

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 8/172 (4%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH-YVQMGSYGIGAMRVVAAVIESSH 333
           +    R  ++G I          + A +   D      V +    +G++     ++   +
Sbjct: 4   RDCLERVWQLGTI-QLDFSMPERLGAHYIAEDNSKQVPVMLHRAVLGSLERFIGILIEHY 62

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            G   +W   V    +++              E     L + G  V  D   E+IG +  
Sbjct: 63  AGSMPLWLSPVQVVVMNIT------DRQAKYAENSVKALREAGFRVESDLRNEKIGFKIR 116

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              L+  P  ++VG + +    + ++ R       M L+E I   +   +  
Sbjct: 117 EHTLMRVPYLLVVGDREMEQGSLAVRTRKGEDLGSMPLQEFIAKMAAEVAER 168


>gi|298245683|ref|ZP_06969489.1| glycyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297553164|gb|EFH87029.1| glycyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 450

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/435 (11%), Positives = 119/435 (27%), Gaps = 29/435 (6%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADL 79
           R G ++ +S       G Y + PLG +  +N+         +     + +    +    +
Sbjct: 22  RRGFVYPNSEIYGGVAGFYDFGPLGVELRNNIRRFWWWSMVQMHDNVVGIEGANITHPRV 81

Query: 80  WVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           W  SG  +++     +  +   R     +     E+             R          
Sbjct: 82  WEASGHVENFVDILVDCKKCKRRFRIDHLDPKNVEQNKCPACGGEFTEPRRFNLLMETYL 141

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
                +    +    + + +  D  +   +                R     G      R
Sbjct: 142 GVVEGDRMKTYLRGEACQNIYLDYDNVVKSSRVQIPFGICQIGKAFRNEVTPGNFLFRQR 201

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMD-FPIPSENTDFDDIISLNSIVEQWTAP 255
                       +        E   +        F       +  D +  +   +   A 
Sbjct: 202 -------EFEQWDLQFFVHPSEMDKWFDYWKEYRFKWYQTIINHKDRLRFHEHGKDELAH 254

Query: 256 YAATSDVHNEKLFDSLPENKRVSARG--------IEVGHIFYFGTKYSLPMSATFKGADG 307
           YA  +     +      E + +  R            G    +    +      +     
Sbjct: 255 YAKKAYDIEYRTILGWQEWEGIHWRQDWDLSRHSQYSGQDLSYTDLNTKERYIPWIVETS 314

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                   +  + A       +   +D   +     +AP K +++ ++ + +      + 
Sbjct: 315 GGVDRTFLNLLLDAYEEQPDPMGKGNDRTVLHLHPWLAPVKCAVLPLQKNKEELVGVAKD 374

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I+  L +      +DD  + IG ++   D +G P  V +  + + D  V ++ R +  + 
Sbjct: 375 IHKNLQRFMV-TQYDD-IQNIGRRYRRQDEIGTPYCVTIDFQTLDDQTVTLRERDSMEQI 432

Query: 428 DMSLEEVINYASHRF 442
            + + E+  Y   R 
Sbjct: 433 RIPISELTMYLLDRV 447


>gi|308174457|ref|YP_003921162.1| histidyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307607321|emb|CBI43692.1| histidyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|328554376|gb|AEB24868.1| histidyl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
 gi|328912781|gb|AEB64377.1| histidyl-tRNA synthetase [Bacillus amyloliquefaciens LL3]
          Length = 424

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/404 (14%), Positives = 114/404 (28%), Gaps = 18/404 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I+RE        E+  P  +  +L+        D   KEM    DR  +++   
Sbjct: 20  WQFVEQIMRETCRTYQYKEIRTPIFEHTELFARGVGESTDIVQKEMYTFEDRKGRSLTLR 79

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P            + + +    P   Y +   FR E        +  +F ++        
Sbjct: 80  PEGTAAAVRAFNENKLFANPVQPTKLYYVGPMFRYERPQTGRFRQFYQFGIEA--IGSKD 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA---DTGETQVFC 223
           P             Y +   +     +    +          E +V       GE    C
Sbjct: 138 PAVDAEVIALAMSIYRKAGLKNVKLVLNSLGDQDS--RKAYREALVKHFEPRIGEFCSDC 195

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVE-------QWTAPYAATSDVHNEKLFDSL-PENK 275
                  P+   +   D    L            + +A Y      +   L      +  
Sbjct: 196 QSRLHTNPLRILDCKKDREHELMKTAPSILDYLNEESAAYFQKVQQYITALGIPFEIDPN 255

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V          F   +      + T     G+   +     G  A  +  A+       
Sbjct: 256 LVRGLDYYNHTAFEIMSNAEGFGAITTLAGGGRYDGLVEQIGGPEAPGIGFAMSIERLLA 315

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   +     I    +  +D    +  +L + G     D   +++  QF  A
Sbjct: 316 AIDAEKTELPVNQGIDCYIVTLGEKAKDYSVSLVYKLREAGISSEIDYENKKMKGQFKTA 375

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           D LG     I+G   ++ +K+ +K   TG + ++ L+E+I    
Sbjct: 376 DRLGARFIAILGEDELAQNKINVKDAETGEQREVVLDELIQVLK 419


>gi|229098875|ref|ZP_04229811.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock3-29]
 gi|229105038|ref|ZP_04235691.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock3-28]
 gi|229117900|ref|ZP_04247262.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock1-3]
 gi|228665557|gb|EEL21037.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock1-3]
 gi|228678377|gb|EEL32601.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock3-28]
 gi|228684548|gb|EEL38490.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock3-29]
          Length = 476

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ +K+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLSVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLNAKFVAVLGEDELDKGIINLKDMATGGQEEVALDVFASYVAEKL 475


>gi|51598659|ref|YP_072847.1| prolyl-tRNA synthetase [Borrelia garinii PBi]
 gi|81825638|sp|Q661L6|SYP_BORGA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|51573230|gb|AAU07255.1| prolyl-tRNA synthetase [Borrelia garinii PBi]
          Length = 488

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 133/415 (32%), Gaps = 65/415 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G    +P G      + +I+ ++   TG      P L     L  E    + +  E   +
Sbjct: 33  GCMVIMPYGYSIWSKIQSILDKKFKETGHENAYFPMLIPYGFLEKEKDHIEGFSPEFAII 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   +++                                                    
Sbjct: 93  KDAGGESLAEPLVLRP-------------------------------------------- 108

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +     + Y+K   SY  +  ++   +  +R E        + EF+     
Sbjct: 109 --------TSETIIWNMYSKWIKSYRDLPLKINQWANVVRWEKRTRPFLRTTEFL--WQE 158

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++ ++  +   +  +   +     +  +    +            S+ E   
Sbjct: 159 GHTAHATEEEAVEETLLILDL-YKRFMEDYLAIPVFCGKKSEKEKFAGAVSTYSI-EALM 216

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++     Y G  ++      F+  DGK  +V   S+GI + R++ A+I    D K
Sbjct: 217 QDKKALQAATSHYLGLNFAKAFDVKFQDKDGKMRHVFASSWGI-STRLIGALIMVHSDEK 275

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCR----DACEKIYARLSKVGCDVFWD-DMGEQIGSQ 391
           G+I P  +AP +I +I I   +        D  + +   L K    V  D D+    G +
Sbjct: 276 GLILPPRIAPIEIIVIPIFKKEDEINKKILDYSDCVVHALKKAEFRVEIDKDVRSSPGFR 335

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED--MSLEEVINYASHRFSN 444
           F+ A+  G P+++ VG   V  + V I  R    +    +SL+ + +       +
Sbjct: 336 FSSAEFKGIPIRIEVGINDVLLNSVTIMRRDKDRKFKYQISLDSLASKVKVELDS 390


>gi|68076271|ref|XP_680055.1| prolyl-t-RNA synthase [Plasmodium berghei strain ANKA]
 gi|56500925|emb|CAH98273.1| prolyl-t-RNA synthase, putative [Plasmodium berghei]
          Length = 523

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 74/469 (15%), Positives = 147/469 (31%), Gaps = 81/469 (17%)

Query: 24  KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           +L+ R   I +   G+Y+ LPLG + ++ +   I     +  +  + +  LQ   LW  S
Sbjct: 79  ELLFRANYIKEI-NGLYNMLPLGLRVINKIKDFINNYLEKINSHSVFLSILQPKRLWNIS 137

Query: 84  GRYDSYGKEM------------------LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            RY  Y  E                   ++     D  ++     E  +T I   +  + 
Sbjct: 138 DRYKLYSDEFLYVYKQKQQKADTNLGETIKKKFEEDGNILSPTCEETALTLINEVYNLNA 197

Query: 126 --RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
             ++ P   +Q   KFR+E R    + +S+EFLMKD YSF    +     Y      Y  
Sbjct: 198 TEKHFPLLIHQYNYKFRNEKRLEKSLFKSKEFLMKDGYSFHTNEKCMNEIYEIYKECYND 257

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           IF++LGLK          I      + +   ++ E Q+ C                    
Sbjct: 258 IFNKLGLKY--------NIIKKRKKDKMNALESHEYQILCRDGKFKEGAHIFKLGDYYSK 309

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            LN     +        +++       +              +     ++ +       +
Sbjct: 310 KLNIN---FLNKKNEKKNIYMGSYGIGINRLLYFLIDNFYDENGIKLPSQVAPFSIYLIQ 366

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                 +  +  +     +R                  +     K    ++ ++D     
Sbjct: 367 TNQKSKYSSEKVNKIANTLR--------------NEINEKTNDNKTLYNSLNSNDMEYI- 411

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK-------- 415
               +Y  L     D ++D+    +  +    DL+G   +VI+  K     K        
Sbjct: 412 LTIWLYTILKANNIDTYYDNTDLHLSRKLKNCDLIGASNRVIINLKSDEKKKIKLPPDFY 471

Query: 416 --------------------------VEIKHRLTGIREDMSLEEVINYA 438
                                     +E K+R +   +++++ E++NY 
Sbjct: 472 SYLDDSNNNKHNIFHNKLYQTFKNIRIEYKNRFSNKTKNITIHELLNYF 520


>gi|291522457|emb|CBK80750.1| glycyl-tRNA synthetase, dimeric type [Coprococcus catus GD/7]
          Length = 465

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 65/443 (14%), Positives = 139/443 (31%), Gaps = 49/443 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     +      L +   WV SG    +   ++   
Sbjct: 32  WDYGNLGVELKNNVKKAWWKKFIQENPYNVGVDCAILMNPQTWVASGHLGGFSDPLMDCK 91

Query: 98  DRNDK--AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           + +++  A        +         +  + N     +  +         +      R+F
Sbjct: 92  ECHERFRADKLIEDFCQDNGIELEGSVDGWSNEQMVNFIDEKNICCPTCGKHNFTDIRQF 151

Query: 156 LMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP----- 201
            +       +T +     Y +          F +  R   +     I    +S       
Sbjct: 152 NLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITP 211

Query: 202 --------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                       +  EF    DT        K+F    + +     D++   +   E+ +
Sbjct: 212 GNFTFRTREFEQMELEFFCEPDTDLEWFAYWKEFCINWLQTLGIKPDEMRVRDHEAEELS 271

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYV 312
             Y+  +            E   ++ R                    T+      + +  
Sbjct: 272 -FYSKATSDIEFLFPFGWGELWGIADRTNYDLSRH----MEVSGEDLTYFDEGKKEKYIP 326

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQV 360
            +    +GA RVV A +  ++D + I             +  ++AP KI ++ +      
Sbjct: 327 FVIEPSLGADRVVLAFLCGAYDEENIGTEEKPDMRTVLHFHPALAPVKIGVLPLSKK--- 383

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  E +YA LSK   +  +DD G  IG ++   D +G P  V        D  V ++ 
Sbjct: 384 LGEKAEAVYAELSKNW-NCEYDDRG-NIGKRYRRQDEIGTPFCVTYDFDSEEDGCVTVRD 441

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +E + +E++  Y   + +
Sbjct: 442 RDTMEQERVKIEDLTAYFMEKLA 464


>gi|255282516|ref|ZP_05347071.1| glycine--tRNA ligase [Bryantella formatexigens DSM 14469]
 gi|255266809|gb|EET60014.1| glycine--tRNA ligase [Bryantella formatexigens DSM 14469]
          Length = 465

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 66/441 (14%), Positives = 141/441 (31%), Gaps = 47/441 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     +      L +   WV SG    +   ++   
Sbjct: 32  WDYGNLGVELKNNVKRAWWQKFIQENPYNVGVDCAILMNPQTWVASGHLGGFSDPLMDCK 91

Query: 98  DRNDK--AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           + +++  A      +           + ++       +  +         +      R+F
Sbjct: 92  ECHERFRADKIIEDYCAEKGIALEGSVDAWTQEQMKNFIDEHNVPCPTCGKHNFTDIRQF 151

Query: 156 LMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP----- 201
            +       +T +     Y +          F +  R   +     I    +S       
Sbjct: 152 NLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITP 211

Query: 202 --------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                       +  EF    DT        K F    + +     D++   +   E+ +
Sbjct: 212 GNFTFRTREFEQMELEFFCEPDTDLEWFAYWKQFCLDWLHNLGLKDDEVRYRDHEKEELS 271

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
             Y+  +            E   ++ R              S      F       +   
Sbjct: 272 -FYSKATTDVEFLFPFGWGELWGIADRTDYDLTQHQ---NVSGQDLTYFDDQKNWKYVPY 327

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVC 361
           +    +GA R+V A + S++D + I             +   +AP KI ++ +       
Sbjct: 328 VIEPSLGADRMVLAFLCSAYDEENIGTEEKPDMRTVLHFHPVLAPVKIGVLPLSKK---L 384

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  EKI+A+LSK   +  +DD G  IG ++   D +G P  V    +  +D  V ++ R
Sbjct: 385 NEGAEKIFAQLSKK-YNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFESETDGAVTVRDR 442

Query: 422 LTGIREDMSLEEVINYASHRF 442
            T  +  + ++E+  Y + +F
Sbjct: 443 DTMEQVRVKIDELEAYFADKF 463


>gi|307595064|ref|YP_003901381.1| Threonyl-tRNA synthetase editing domain-containing protein
           [Vulcanisaeta distributa DSM 14429]
 gi|307550265|gb|ADN50330.1| Threonyl-tRNA synthetase editing domain protein [Vulcanisaeta
           distributa DSM 14429]
          Length = 621

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/419 (14%), Positives = 134/419 (31%), Gaps = 52/419 (12%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPT--LQSADLWVESGRYDSYGKEM----LR 95
           + P     ++ V        N  G     +P   ++  +++    R       +    + 
Sbjct: 226 YGPAATLMMELVEDYAWRLANELG-----IPVFKIRGTNMFRRGERAIDEHARLFNERMY 280

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSRE 154
             + +   +I           + R  + SYR++P    ++   +R E         R R 
Sbjct: 281 TIEGDKDELIMRYAACFQQFAMIRDWVLSYRDIPIGMLEVADSYRYEQPGETVLCFRLRR 340

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D + F    + +     K+     R   +LG   + +   +     D   ++++  
Sbjct: 341 FYMPDLHIFTRDLKNAMEVALKLHEVIFREIRKLGRDYVSLYNVTKQFY-DEHRDYLIEL 399

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              E +            P       +      +  ++              + D L   
Sbjct: 400 AKREGK------------PILVRVMPEQKYYWVLNVEF-------------HIVDELRRP 434

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESS 332
           + ++    +VG+   FG          ++  +G+  Y  +    I     R + A+++++
Sbjct: 435 REIATFQFDVGNAQRFG--------IKYRDENGEVKYPVIIHTAIIGSVERYIYALLDTA 486

Query: 333 HDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
              +       +  +   +   +    +        I ++L      V  DD   E +  
Sbjct: 487 AIAESRGEVPRLPTWVSPVQVRVIPISKEHLAFANDIASKLEDRMIRVDIDDRFDETLAK 546

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN--NRP 447
           +   A+    P  V+VG + V   K+ ++ R T    DM ++E+I+           RP
Sbjct: 547 RVRDAETFWVPYIVVVGDREVKTGKLSVRVRGTQKPIDMGVDELISRVEEEIKGYPRRP 605


>gi|317499137|ref|ZP_07957414.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893550|gb|EFV15755.1| glycyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 462

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 67/445 (15%), Positives = 142/445 (31%), Gaps = 56/445 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG   ++   +
Sbjct: 32  WDYGNLGVELKNNVKKAWWKKFI----QESPYNVGIDAAILMNPQTWVASGHLGNFSDPL 87

Query: 94  LRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           +   + +++     +I     E  M         S   +     +  +        +   
Sbjct: 88  MDCKECHERFRADKLIEDYMQEHGMEIEGSVDAWSKEEMESFINEHDVVCP--TCGKKNF 145

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESG 200
              R+F +       +T +     Y +          F +  R   +     I    +S 
Sbjct: 146 TEIRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSF 205

Query: 201 P-------------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
                             +  EF    D         K++    + +     D++   + 
Sbjct: 206 RNEITPGNFTFRTREFEQMELEFFCEPDKDLEWFEYWKNYCINWLQTLGIKEDEMRVRDH 265

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             E+ +    ATSD+          E   ++ R              S      F   + 
Sbjct: 266 EKEELSHYSKATSDI-EFMFPFGWGELWGIADRTDYDLTQHQ---NTSGEDLTYFDDVNK 321

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHD 358
           + +   +    +GA RV  A + S++D + +          +  ++AP KI ++ +    
Sbjct: 322 ERYIPYVIEPSLGADRVTLAFLCSAYDEEELEGGDTRTVLHFHPALAPVKIGILPLSKK- 380

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D   K+Y  L     +  +D+ G  IG ++   D +G P  V      + D  V +
Sbjct: 381 --LSDGAMKVYEEL-AKEYNCEFDERG-NIGKRYRRQDEIGTPYCVTFDFDSLEDGAVTV 436

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +E + +E +  Y + +F+
Sbjct: 437 RDRDTMEQERVKIENLKAYFAEKFA 461


>gi|256375404|ref|YP_003099064.1| glycyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
 gi|255919707|gb|ACU35218.1| glycyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
          Length = 461

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 64/432 (14%), Positives = 127/432 (29%), Gaps = 35/432 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNR--TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  DN+         R     + +    +   ++W  SG  +++   ++   
Sbjct: 33  WDYGPLGVELKDNIKRQWWNFMVRGREDVVGLDSSVILPREVWTASGHVEAFVDPLVECN 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +        EE      +   +   +              E R   G++++    +
Sbjct: 93  SCHKR-FRQDTLSEEYAERTGKDVAEGDVSDVPCPNCGTRGQYTEPRMFNGLLKTHLGPV 151

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG----- 204
           +           +       F++      R         G            I       
Sbjct: 152 ETEEGLHYLRPETAQGIFTNFLNVQTTSRRKPPFGIGQIGKSFRNEITPGNFIFRTREFE 211

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +  EF V   T E       D             D++       E+ +     T D+  
Sbjct: 212 QMEMEFFVEPGTDEQWHQYWIDERTRWYTELGISADNLRHYEHPAEKLSHYAKRTVDIEY 271

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F      +     GI     F   T   +S    + F  A    +   +     G  
Sbjct: 272 RFRFGGQEWGELE---GIANRTDFDLTTHSNHSGVDLSYFDQATNSRYRPFVIEPAAGVG 328

Query: 323 RVVAAVIESSHDGKGIIWPDSVA------PFKISLINIKA------HDQVCRDACEKIYA 370
           R + A +  ++                       L  +KA       +       + + A
Sbjct: 329 RPMMAFLLEAYTEDEAPNAKGGVDKRVVLRLDRRLAPVKAAVLPLSRNADLSPKAKDLAA 388

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K   +V +DD G  IG ++   D +G P  V V    ++D  V ++ R T  +E +S
Sbjct: 389 ALRKHW-NVEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLTDHAVTVRERDTMSQERVS 446

Query: 431 LEEVINYASHRF 442
           ++++  Y + R 
Sbjct: 447 MDQIEGYLAARL 458


>gi|85057389|ref|YP_456305.1| glycyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789494|gb|ABC65226.1| glycyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 452

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 58/441 (13%), Positives = 131/441 (29%), Gaps = 33/441 (7%)

Query: 27  LRTGMIHQHSKGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWV 81
           +  G   +   G+   + + PLG    +N+     ++  +     + +    L ++ +W 
Sbjct: 17  VFAG--SEIYGGLANSWDYGPLGSLLKNNIKKAWLQKFVQEQPNNVLLDGSILLNSAVWK 74

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            SG  DS+   +    D N +                     SY  +     + Q+    
Sbjct: 75  ASGHLDSFSDPLTENQDNNKRFRADKLIETHDPQLDISGW--SYEQMHDYLVKNQVLGTS 132

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR--IFHRLGLKSIPMRAES 199
              P        +                  +   +F+ +       R  L     +   
Sbjct: 133 NWTPIRPFNMLFQTRQGVILKNSKPLYLRPETAQGIFIQFKNILKTTRKKLPFGVCQIGK 192

Query: 200 GPIGGDLSHEFIVLA---DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                     FI      +  E + FC                 D + +  +  Q     
Sbjct: 193 VFRNEVTPGNFIFRTCEFEQMELEFFCQPGTETHWFNHWKKLMYDFLIILGMNPQNLKFK 252

Query: 257 AATSDVHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGT--KYSLPMSATFKGADGKD 309
               +  +     +     +         GI     F   T  K S      F     + 
Sbjct: 253 DHKKEDLSHYSKQTCDILFKFPWGFDELWGIASRTNFDLKTHQKNSKKDLTYFDETTKQK 312

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGII--------WPDSVAPFKISLINIKAHDQVC 361
               +    +G  R+  A + +++              +   +AP+K++++ +       
Sbjct: 313 ILPYVIEPSLGIERLFFAFLINNYHENSTSNETRQILSFHPFLAPYKVAVLPLIKKKHSA 372

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +   ++I   L     DV +D+    IG ++   D++G P  + V  + ++ + + +++R
Sbjct: 373 K--AQEINQYL-AKYFDVCYDETK-SIGKRYRRQDMIGTPFCITVDDQTLTHNIITLRNR 428

Query: 422 LTGIREDMSLEEVINYASHRF 442
            T  ++   L EV  Y   + 
Sbjct: 429 DTAQQQTFLLTEVKQYIQEKI 449


>gi|302528819|ref|ZP_07281161.1| glycyl-tRNA synthetase [Streptomyces sp. AA4]
 gi|302437714|gb|EFL09530.1| glycyl-tRNA synthetase [Streptomyces sp. AA4]
          Length = 468

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 64/433 (14%), Positives = 139/433 (32%), Gaps = 36/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           + + PLG +  DN+     +   Q+R   + +    +    +WV SG  + +   ++   
Sbjct: 39  WDYGPLGVELKDNIKRQWWKTVVQSREDVVGIDSSVILPRQVWVASGHVNVFTDPLIECL 98

Query: 97  ------------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
                        D   +        +           +     P  F  +       + 
Sbjct: 99  SCHKRFRADQLAEDFEARTGKTTTEDDLSEVPCPNCGTRGKYTEPRDFNMMLKTHLGPVE 158

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              G+   R    +  +   L  + +        +  +    R  +        +     
Sbjct: 159 TEEGLAYLRPETAQGIFVNFLNVQKASRKKPPFGIGQIGKSFRNEITPGNFIFRTREFEQ 218

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                F+   D  +   +      D+         +++       E+ +     T D+  
Sbjct: 219 MEMEFFVEPGDDEQWHQYWIDARTDW-YKDLGIKPENLRHFEHPKEKLSHYAKRTVDIEY 277

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F++    +     GI     F   T   +S    + F  A G+ +   +     G  
Sbjct: 278 RFEFNA--GQEWGELEGIANRTDFDLTTHSNHSGVDLSFFDQASGQRYRPFVIEPAAGVG 335

Query: 323 RVVAAVIESSHDGKGI-------------IWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           R + A +  ++D + +                  +APFK +++ + + +         + 
Sbjct: 336 RSMMAFLIDAYDEEEVPNAKGGTDKRTVLHLDPRLAPFKAAVLPL-SRNADLSPKARDLA 394

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           ARL K   +V +DD    IG ++   D +G P  V V    + D  V I+ R +  +E +
Sbjct: 395 ARLRKHW-NVDFDDAQA-IGRRYRRQDEIGTPYCVTVDFDTLEDDAVTIRERDSMKQERI 452

Query: 430 SLEEVINYASHRF 442
           S+++V +Y + R 
Sbjct: 453 SIDQVESYLAGRL 465


>gi|295104663|emb|CBL02207.1| glycyl-tRNA synthetase [Faecalibacterium prausnitzii SL3/3]
          Length = 473

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 68/446 (15%), Positives = 140/446 (31%), Gaps = 50/446 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +NV     ++  +     + +    + +   WV +G   S+     +  
Sbjct: 35  WDYGPLGVEFKNNVKKAWLKKFVQESPYNVGLDAAIIMNPQTWVTTGHVSSFSDPLLDCR 94

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP---RFGVMR 151
               R+    + G  H EV  D                    +  + +  P      + +
Sbjct: 95  ACKARHRADKLIGEEHPEVNVDAMSFDEMDAFIAEHEDIVCPVCGKHDFTPIRKFNLMFK 154

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPI------- 202
           +   + +D+ S       +       F +  R   R          +A    I       
Sbjct: 155 TAIGVTEDSSSTCYLRPETAQGIFVNFANIQRTTRRKLPFGVCQVGKAFRNEITPGNFTF 214

Query: 203 ----GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                  +  EF     T        KD+ +  + S     + +   +    +      A
Sbjct: 215 RTREFEQMECEFFCKPGTDLDWFAYWKDYCENWLLSLGIKKEHLRLRDHEPAELAFYSRA 274

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           T+D+     F    E   ++ R           +  SL     F     + +   +    
Sbjct: 275 TTDIEYAFPFTDWGELWGIADRTNYDLTRHQEASGKSLEY---FDSETNEHYIPYVIEPS 331

Query: 319 IGAMRVVAAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           +G  RV  A +  ++D                +    ++AP+K +++ +        +  
Sbjct: 332 LGCDRVALAFLCEAYDEEHLTDSKGKEDVRTVLRLHPALAPYKCAVLPLSKK---LGEKA 388

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV--------SDSKVE 417
            +I   LSK    V +DD G  IG ++   D +G P  + V    V        +D+ V 
Sbjct: 389 MEIRNELSKY-FMVDYDDTG-SIGKRYRREDEIGTPFCITVDFDTVGDEAKGIAADNCVT 446

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ R T  +  M + E+ +Y   +  
Sbjct: 447 VRDRDTMEQVRMPISELKSYIESKIE 472


>gi|163942153|ref|YP_001647037.1| histidyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|163864350|gb|ABY45409.1| histidyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
          Length = 423

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 125/414 (30%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    R+   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 13  LPGSVELWQYIEGQARDICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 72

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 73  ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 130 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 188

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L S     T      S V+ +K+ + L     
Sbjct: 189 GEFCSDCQSRLEKNPLRILDCKKDRNHELMSTAPSITEYLNEDSAVYYDKVQELLTMMDV 248

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 249 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 308

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 309 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDRAAKVAFDLRKAGLSVEKDYLDRKM 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 369 KAQFKSADRLNAKYVAVLGEDELDKGIINLKDMATGGQEEVALDVFASYVAEKL 422


>gi|148643241|ref|YP_001273754.1| histidyl-tRNA synthetase [Methanobrevibacter smithii ATCC 35061]
 gi|261349966|ref|ZP_05975383.1| histidine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
 gi|148552258|gb|ABQ87386.1| histidyl-tRNA synthetase, HisS [Methanobrevibacter smithii ATCC
           35061]
 gi|288860749|gb|EFC93047.1| histidine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
          Length = 431

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 146/427 (34%), Gaps = 48/427 (11%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMI 105
            +      +I+R         E+  P  +   L+  +SG  +    ++    D++D+ + 
Sbjct: 17  MRERKKAESILRNVFENYAYQEIKTPLFEELKLFTTKSG--EEIVDQLYNFKDKSDRELT 74

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFD 164
             P     +  ++ + ++   + P   Y     FR E   +    R R+F          
Sbjct: 75  LRPEITAPVARLYLNELQKTASKPIKLYYYGSCFRYERPQKG---RFRQFWQFGCELIGA 131

Query: 165 LTPEGSKHSYNKMFVSYLR------IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            +P+G          S  +        +   L  I    +   I      E +V+ D G+
Sbjct: 132 KSPQGEAEVIAMCSESIEKLGIPGADVNINHLGIIRGLFKHFNIDTATQREVMVVIDKGD 191

Query: 219 TQVFCSKDFMDFPI-PSENTDFDDIISLNS--------IVEQWTAPYAATSDVHNE--KL 267
             +       + PI  +E  +      ++          +E+  APY  + D  NE  +L
Sbjct: 192 KDLLKESLTGENPIIDNEELNHVLFKLIDMVGDKSIIKDIEELVAPYPESHDALNELEEL 251

Query: 268 FDSLPENKRVSA-------RGIEV--GHIFY-----FGTKYSLPMSATF-KGADGKDHYV 312
            D+L   K  +        RG++   G +F       G +  +    T+          V
Sbjct: 252 IDTLASFKMENYTLNLGVARGLDYYTGIVFEVYIPSLGAQKQVCGGGTYSLIKIFGGEEV 311

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               +  G  R++ A+       +     +   P  I +  I       R    +I   L
Sbjct: 312 VSTGFAFGFDRLMNAI------EELATPEELPCPIDIYVAPI---SDDVRLKAYEITQTL 362

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G     D  G++       A+ +      I+G+K + ++++ IK+  +G +E + L+
Sbjct: 363 RSAGIACDVDLNGKKFKKIMNHANKIKVKQVAIIGAKDLENNQITIKNMESGNQELVDLD 422

Query: 433 EVINYAS 439
            V+ Y  
Sbjct: 423 NVVEYIK 429


>gi|222151464|ref|YP_002560620.1| glycyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
 gi|254781879|sp|B9E6V6|SYG_MACCJ RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|222120589|dbj|BAH17924.1| glycyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
          Length = 462

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 53/439 (12%), Positives = 140/439 (31%), Gaps = 45/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W  SG   ++   M+   
Sbjct: 33  WDYGPLGVELKNNVKRAWWQKFVQQSPYNVGLDAAILMNPKTWEASGHLSNFNDPMIDNK 92

Query: 98  D--------RNDKAMIYGPTHEEVMTDIFR-SHIKSYRNLPFTFYQIQLKFRD-ELRPRF 147
           D        +  +  ++    E  + D      +K + +       +       E+R   
Sbjct: 93  DSKIRYRADKLIEDYMHAQGDEHFIADGMSFDEMKQFIDEKGIVCPVSGTANWTEIRQFN 152

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAES 199
            + ++ + + + + +       +       + +  R   +         G          
Sbjct: 153 LMFKTFQGVTESSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIAQVGKSFRNEITPG 212

Query: 200 GPIGGDLSHEFIV--LADTGETQVFCSKDFMDFPIPSEN--TDFDDIISLNSIVEQWTAP 255
             I      E +         T++   + + +F           ++   L    E   + 
Sbjct: 213 NFIFRTREFEQMELEFFCKPGTEIEWQEYWKNFAAKWLKDLGIKEENTKLRDHDEDELSH 272

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS-LPMSATFKG-ADGKDHYVQ 313
           Y+  +     K      E   +++R       F      +      ++      + +   
Sbjct: 273 YSNATTDIEYKFPFGWGELWGIASR-----TDFDLKAHMAASGDDFSYHDQETNEKYVPY 327

Query: 314 MGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDA 364
                +GA RV  A +  +++ +          + +  ++AP+K +++ +          
Sbjct: 328 CIEPSLGADRVTLAFLCDAYEEETLEGGDSRTVMRFHPALAPYKAAILPLSKK---LSPD 384

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+Y  L      + +D+  + IG ++   D +G P  +      + D++V ++ R T 
Sbjct: 385 AMKVYEAL-SADFAIDFDES-QSIGKRYRRQDEIGTPFCITFDFDSLEDNQVTVRDRDTM 442

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + EV  +   +  
Sbjct: 443 EQVRMPISEVKAFLDEKIK 461


>gi|294812531|ref|ZP_06771174.1| Glycyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|326441016|ref|ZP_08215750.1| glycyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|294325130|gb|EFG06773.1| Glycyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 461

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 59/432 (13%), Positives = 130/432 (30%), Gaps = 35/432 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    + ++++W  SG   ++   +    
Sbjct: 33  WDYGPLGVELKENLKRQWWRYMVTSREDVVGIDSSVILASEVWEASGHVATFTDPLTECT 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +        E           ++                 + +   G++ +     
Sbjct: 93  SCHKR-YRADHLIEAYEEKHNGRAPENGLADLNCPNCGNKGTFTDPKQFSGLLSTHLGPT 151

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------LGLKSIPMRAESGPIGG----- 204
            D+ S       +       F        R        +G            I       
Sbjct: 152 ADSGSVAYLRPETAQGIFTNFGLVQNTSRRKPPFGIAQMGKSFRNEITPGNFIFRTREFE 211

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +  EF V     E       D             +++       E+ +     T+D+  
Sbjct: 212 QMEMEFFVKPGEDEHWQQYWMDQRWNWYTGLGMREENMRWYEHPKEKLSHYSKRTADIEY 271

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F     N+     G+     +  G  +K S    + F    G+     +     G  
Sbjct: 272 RFQF---GGNEWGELEGVANRTDYDLGAHSKASGQDLSYFDQEAGERWTPYVIEPAAGVG 328

Query: 323 RVVAAVIESSHDGKGI------IWPDSVAPFKISLINIK------AHDQVCRDACEKIYA 370
           R + A +  +++          +   +V      L  +K      + +       + + A
Sbjct: 329 RAMLAFMLDAYNEDEAPNAKGVMEKRTVMRLDPRLAPVKVAVLPLSRNAQLSPKAKGLAA 388

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R T  +E +S
Sbjct: 389 DLRQHW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRERDTMQQERVS 446

Query: 431 LEEVINYASHRF 442
           L+++  Y   R 
Sbjct: 447 LDQIQAYLGARL 458


>gi|323342095|ref|ZP_08082328.1| glycyl-tRNA synthetase beta subunit [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464520|gb|EFY09713.1| glycyl-tRNA synthetase beta subunit [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 457

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 55/435 (12%), Positives = 130/435 (29%), Gaps = 40/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +   NV  +  E         +      L +  +W  SG  D++   ++   
Sbjct: 33  WDFGPLGIELKQNVKKLWWESFVSRNPYNVGIQSAILMNPSVWQASGHLDTFNDPLMDCR 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             N +        E   T+I    + +     +                  + +      
Sbjct: 93  KCNTRHRADKLIEEFSETEINAGVMSNEDMELYIQEHQIPCPNCGGHDFTNIRQFNLMFK 152

Query: 158 KDAYSFDLTPEGSK---HSYNKMFVSYLRIFH-----------------RLGLKSIPMRA 197
                 + T         +   MFV+Y  +                   R  +       
Sbjct: 153 TFQGVTEDTSNAIYLRPETAQGMFVNYRNVQRSMRKKLPFGIAQIGKSFRNEITPGQFIF 212

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            +          F+   +  E   +  K  MD+ I        + + L    E   + Y+
Sbjct: 213 RTREFEQMELEFFVKPGEDLEWYEYWKKFAMDWLIG--LGIKPENLRLREHDEDELSHYS 270

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             +     +      E   ++ R            ++S            + +       
Sbjct: 271 KGTSDIEYRFPWGFDELWGIADRTDYDLKQHQ---EHSKVSMEYLDPETNEKYIPYCVEP 327

Query: 318 GIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
            +G  R++ A+I  ++D +         + +   +AP ++ ++ +        +   +I 
Sbjct: 328 SLGVERLMLALICEAYDEEELENDTRVVMHFSPKLAPTQVCVLPLSKK---LSEPAREIM 384

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L        +D+    IG ++   D +G P  +      + D KV +++R +  +  +
Sbjct: 385 HKLMGS-FACDFDET-ASIGKRYRRQDAIGTPFCITFDFDSLEDEKVTLRYRDSMEQVRV 442

Query: 430 SLEEVINYASHRFSN 444
           S++E I   +   + 
Sbjct: 443 SVDEAIALMNAEINK 457


>gi|213619333|ref|ZP_03373159.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 115

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 31/87 (35%)

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +   ++  +L   G  V  D   E+IG +     L   P  ++ G K V   KV +
Sbjct: 22  DSQSEYVNELTQKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAV 81

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNN 445
           + R       + + +VI        + 
Sbjct: 82  RTRRGKDLGSLDVNDVIEKLQQEIRSR 108


>gi|154484526|ref|ZP_02026974.1| hypothetical protein EUBVEN_02240 [Eubacterium ventriosum ATCC
           27560]
 gi|149734374|gb|EDM50291.1| hypothetical protein EUBVEN_02240 [Eubacterium ventriosum ATCC
           27560]
          Length = 465

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 65/442 (14%), Positives = 132/442 (29%), Gaps = 47/442 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     +      L +   WV SG    +   ++   
Sbjct: 32  WDYGNLGVELKNNVKKAWWKKFIQENPYNVGVDCAILMNPQTWVASGHLGGFSDPLMDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           + +++        E+ M D       S   + +     Y  + K       +      RE
Sbjct: 92  ECHER-FRADKIIEDYMADNGIEAEGSVDGWTHEQMADYIEEHKIACPTCGKHNFTEIRE 150

Query: 155 FLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRA 197
           F +       +T +     Y                             ++G        
Sbjct: 151 FNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQVGKSFRNEIT 210

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----NTDFDDIISLNSIVEQWT 253
                      E + L    E                +        +D + L     +  
Sbjct: 211 PGNFTFRTREFEQMELEFFCEPGTDLEWFQYWRAFCRDWLLSLGIKEDEMRLRDHSPEEL 270

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
             Y+  +            E   ++ R            + S      F     + +   
Sbjct: 271 CFYSKGTTDIEFLFPFGWGELWGIADRTDYDLTQHQ---ELSKQDLTYFDDDKHERYVPY 327

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVC 361
           +    +GA RV  A + +++D + I             +  ++AP KI ++ +       
Sbjct: 328 VIEPSLGADRVTLAFLCAAYDEENIGTEEKPDMRTVLHFHPALAPVKIGVLPLSKK---L 384

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  EK++A LSK   +  +DD G  IG ++   D +G P  V        D  V ++ R
Sbjct: 385 NEGAEKVFAELSKY-YNCEFDDRGA-IGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRDR 442

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            T  +E + +E++  Y   +F 
Sbjct: 443 DTMEQERIKIEDLKEYFEQKFE 464


>gi|95931408|ref|ZP_01314117.1| histidyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684]
 gi|95132545|gb|EAT14235.1| histidyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684]
          Length = 424

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 61/422 (14%), Positives = 124/422 (29%), Gaps = 26/422 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP        +    R      G  E+ VP ++  +L+  S     D   KEM  
Sbjct: 8   GMNDILPSEIATWQFLEDTARRIFATYGCQEIRVPVVEKTELFCRSIGETTDIVEKEMYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D++D ++   P     +   F  H    ++     Y +   FR E   +    R R+F
Sbjct: 68  FNDKSDNSLTLRPEGTAPVMRSFIQHKLFNQDQVSKLYYLGPMFRYERPQKG---RYRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
               A    +           M   Y   F  +GL  + ++  S             L D
Sbjct: 125 HQIGAEIIGIDDPRMDAQVLAMLSHY---FEAVGLTDVSLQINSLGCPKCRPDYRQTLID 181

Query: 216 TGETQV--FCSKDFMDFPIPSENTDFDDIIS-----------LNSIVEQWTAPYAATSDV 262
             + ++   C      +             S           L+ + ++    +A     
Sbjct: 182 FLQQRLDQLCPDCQRRYATNPLRVLDCKSKSCKEATQDAPSVLDHLCDECDTHFATVQQC 241

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            N+        N+ V          F   T      +   + A             +G  
Sbjct: 242 LNQLGTAYSINNRMVRGLDYYTKTTFEMVT-----NNLGAQNAVAAGGRYDGLVEELGGP 296

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            +         +   ++  D         + +    +   +   K+  +L + G     D
Sbjct: 297 SLPGIGFAMGVERLVLLLQDKKIKTPPPALFLATLGKDAEEFAFKVLHQLQREGIYAEMD 356

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             G  + +Q   AD L     +++G   +S+   ++K    G ++ + L +++       
Sbjct: 357 FTGRSLKAQLRRADKLNCRYTIMIGDNELSEGSAQLKRMADGDQQAVQLSQLLEQLRPLL 416

Query: 443 SN 444
            +
Sbjct: 417 DD 418


>gi|126459249|ref|YP_001055527.1| threonyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
 gi|166225487|sp|A3MTU4|SYT_PYRCJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126248970|gb|ABO08061.1| aminoacyl-transfer RNA synthetase, class II [Pyrobaculum
           calidifontis JCM 11548]
          Length = 607

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/345 (16%), Positives = 109/345 (31%), Gaps = 39/345 (11%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKD 159
           D  +I           + +  + SYRNLPF   +I   +R E       + R R F M D
Sbjct: 276 DTDLILRYAACFQQFAMAKDWVISYRNLPFGMLEIADSYRHEQPGETVVLFRLRRFYMPD 335

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            + F      +     K+  +  R   +LG   + +   +           +        
Sbjct: 336 LHIFTKDLAEAVEVSYKVHEAIFREIGKLGRTYVSLYNVTEEFYKSHRDYLV-------- 387

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                          E    +    L  I+      +    + H   + D L   + ++ 
Sbjct: 388 ---------------ELARREGKPILVRILPTQKYYWVLNVEYH---IVDELGRPREIAT 429

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKG 337
             I+VG+   FG          +   + +  Y  +    I     R + AV ++    + 
Sbjct: 430 FQIDVGNAQRFG--------IKYVDENNQVKYPVIIHTAIIGSVERYLYAVFDTIAKAER 481

Query: 338 IIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                 +  +   +   I    +       ++  +L + G  V  DD  E +  +   A+
Sbjct: 482 EGKTPRLPTWLAPVQVRIIPVARDNLKFAMEVADKLEEAGIRVDVDDRDETLSKRIRDAE 541

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
               P   +VGSK      + ++ R  G +  M+ EE+I      
Sbjct: 542 TSWVPYVCVVGSKEEETGTLSVRIRGEG-QAKMTAEELIKRVREE 585


>gi|328715866|ref|XP_001943193.2| PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Acyrthosiphon
            pisum]
          Length = 1143

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 62/446 (13%), Positives = 121/446 (27%), Gaps = 95/446 (21%)

Query: 24   KLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNR--TGAIEMSVPTLQSA-DL 79
            +++++  MI  +   G Y   P   +  + +         R          P   S   L
Sbjct: 623  QVLVKGEMIEYYDVSGCYVLRPWAYRIWELIQEWFDARIKRKPLNIQNCYFPMFVSQGAL 682

Query: 80   WVESGRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
              E      +  E+  +    +  +       PT E  M   F   I+SYR+LP    Q 
Sbjct: 683  EREKEHIADFAPEVAWVTKSGETDLAEPIAIRPTSETGMYPAFAKWIQSYRDLPLKLNQW 742

Query: 136  QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
                R E +     +R                                            
Sbjct: 743  NSVVRWEFKHPQPFLR-------------------------------------------- 758

Query: 196  RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
               +        H      +  E  V  +  + ++   +       I    +  E++   
Sbjct: 759  ---TREFLWQEGHNAYATREEAERDVLITLGYYEYVYKNMLA-VPVIKGKKTEKEKFAGG 814

Query: 256  YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
               T+                 S R I+     Y GT ++      F+  D         
Sbjct: 815  IFTTT----------CEAYVASSGRAIQGATSHYLGTNFAKMFDVHFEHPDTHKKSFVHQ 864

Query: 316  SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-------CEKI 368
                   R +  ++    D +G++ P  +A  ++ ++      +   +        C  +
Sbjct: 865  ISFGMTTRTIGVMVMVHGDDRGLVLPPRIASIQVIIVPCGVGVKTSNEVKDNLTRTCLDV 924

Query: 369  YARLS---------------------KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIV 406
              RL                       +      D       G +F   +L G PL++ +
Sbjct: 925  CNRLKGDSLIESDDENDNSVIQHRNSSLIIRADTDLRDNYSPGWKFNHWELKGVPLRLEI 984

Query: 407  GSKFVSDSKVEIKHRLTGIREDMSLE 432
            G K +S +++    R  G +  + LE
Sbjct: 985  GPKDLSRNQIIAVRRDNGDKLTIPLE 1010


>gi|323483766|ref|ZP_08089146.1| hypothetical protein HMPREF9474_00895 [Clostridium symbiosum
           WAL-14163]
 gi|323402957|gb|EGA95275.1| hypothetical protein HMPREF9474_00895 [Clostridium symbiosum
           WAL-14163]
          Length = 462

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 65/444 (14%), Positives = 137/444 (30%), Gaps = 54/444 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L ++  WV SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKKAWWQKF----VQESPYNVGVDCAILMNSQTWVASGHLGGFSDPL 87

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVM 150
           +      ++        E+ M +       S   +       Y            +    
Sbjct: 88  MDCKACKER-FRADKLIEDYMDEKGIKIEGSVDAWSQEEMKKYIDDNNICCPSCGKHDFT 146

Query: 151 RSREFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
             R+F +       +T +     Y        +FV++  +      K     A+ G    
Sbjct: 147 DIRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQVGKSFR 206

Query: 205 DLSH----------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           +                   EF    DT        K++    + +      ++ + +  
Sbjct: 207 NEITPGNFTFRTREFEQMELEFFCEPDTDLEWFAYWKEYCINWLKALGIKEVEMRARDHE 266

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E+ +  Y+  +            E   ++ R              S      F      
Sbjct: 267 QEELS-FYSKATTDIEFLFPFGWGELWGIADRTDYDLTQHQ---NTSGQDMTYFDDEKKI 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQ 359
            +   +    +GA RV  A + +++D + I          +  ++AP KI ++ +     
Sbjct: 323 KYIPYVIEPSLGADRVTLAFLCAAYDEEEIGEGDVRTVLHFHPAIAPVKIGVLPLSKK-- 380

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  EK+Y  L K   +  +DD G  IG ++   D +G P  +       +D  V ++
Sbjct: 381 -LNEGAEKVYNELCKY-YNCEFDDRG-NIGKRYRRQDEIGTPFCITYDFDSETDGAVTVR 437

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R T  +  + + E+  Y   +F 
Sbjct: 438 DRDTMEQVRVPITELKAYFEDKFR 461


>gi|269976456|ref|ZP_06183441.1| glycyl-tRNA synthetase [Mobiluncus mulieris 28-1]
 gi|306818266|ref|ZP_07451995.1| glycyl-tRNA synthetase beta subunit [Mobiluncus mulieris ATCC
           35239]
 gi|269935257|gb|EEZ91806.1| glycyl-tRNA synthetase [Mobiluncus mulieris 28-1]
 gi|304648911|gb|EFM46207.1| glycyl-tRNA synthetase beta subunit [Mobiluncus mulieris ATCC
           35239]
          Length = 461

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 60/434 (13%), Positives = 131/434 (30%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+         R+    + +    +    +W  SG   ++   ++   
Sbjct: 32  WDYGPLGVELKENIKKAWWNYMVRSREDVVGLDSSVILPPKVWEASGHLKAFTDPLIECT 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + +        E+        +  +            +K +  E R   G++++    
Sbjct: 92  SCHKR-YREDDLQEKYAEKHGIDNPDTVDMAVVACENCGVKGQWTEPRAFSGLLKTYLGP 150

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGGDLSH 208
           + D          +       F + +            ++G            I      
Sbjct: 151 VDDESGLHFLRPETAQGIFINFANVMNSARMRPPFGIGQIGKSFRNEITPGNFIFRTREF 210

Query: 209 E-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           E     F V   T E       D             D++       E+ +     T D+ 
Sbjct: 211 EQMELEFFVEPGTDEEWHQYWIDHRFAWYTDLGISADNLRFYEHPKEKLSHYSKRTVDIE 270

Query: 264 NEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               F+     E + ++ R      +     + S      +  A  +     +     G 
Sbjct: 271 YAFGFEGSKWGELEGIANRTDYDLSVH---AEASGQKLDYYDQAKDERWVPYVIEPSAGL 327

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       +AP K+++  +    +   +    I
Sbjct: 328 TRSLMAFLIEAYTEDEAPNTKGGVDKRTVLRLDPRLAPVKVAVFPLSKK-ETLPELARGI 386

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A L K   +V +DD G  +G ++   D +G P  V V    VSD  V ++ R +  +E 
Sbjct: 387 AADLRKFW-NVDYDDAGA-VGRRYRRQDEIGTPYCVTVDFDSVSDHAVTVRERDSMTQER 444

Query: 429 MSLEEVINYASHRF 442
           + +E ++ Y   + 
Sbjct: 445 IPMEGLVAYLRDKL 458


>gi|303241216|ref|ZP_07327723.1| glycyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302591227|gb|EFL60968.1| glycyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 460

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 133/443 (30%), Gaps = 31/443 (6%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G I Q S    G+   + + PLG +  +N+    R    Q R  + E+    L +   
Sbjct: 15  RYGFIFQGSDIYGGLANTWDYGPLGTRLKNNIKDAWRYYFIQIRDNSFELDSDILMNPTT 74

Query: 80  WVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHE----EVMTDIFRSHIKSYRNLPFTF 132
           W  SG  +S+   +L   +   R+   ++     E    + MT+         + +P   
Sbjct: 75  WEASGHLESFTDPLLDCKECKTRHRADILINDFDESANADAMTEDEMVKFIKDKKVPCPK 134

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
                             +           +           N + V             
Sbjct: 135 CGKSNLTDIRKFNLMFSTQCGSTQETSNTIYLRPENAQGEYVNFLNVLRTMRTKLPFSIG 194

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              +A    I         +  +  E Q FC +   +                  + ++ 
Sbjct: 195 QIGKAFRNEITKGKFTFRTIEFEQMEYQTFCKQGDDEALYEYFKDYGIKFFEFIGLSKEH 254

Query: 253 TAPYAATSDVHNEKLFDSL----PENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGAD 306
                     H  K    +    P               F      ++S      F    
Sbjct: 255 LQFRDHKKLAHYAKAACDIEYLFPFGWGEINGTHNR-TDFDLQRHQEFSGKNMEYFDTET 313

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA--PFKISLINIKAH-----DQ 359
            + +   +     G  R+V AV+  S   + +   ++      K SL  IK +      +
Sbjct: 314 NEKYIPYVIESTYGLDRLVLAVLFESLLEEELENGETRQVLKIKPSLAPIKVNVLPLIKK 373

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  ++IY  L K    V +DD G  IG ++   D +G P  V +    + ++ V ++
Sbjct: 374 RHAEKAQEIYNELKKY-FMVSYDDAG-NIGKRYRRGDAIGTPYSVTIDDTTLDNNTVTVR 431

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            R T  +  ++++++  Y     
Sbjct: 432 ERNTMHQVTITVDKLKCYLLENI 454


>gi|318079886|ref|ZP_07987218.1| threonyl-tRNA synthetase [Streptomyces sp. SA3_actF]
          Length = 368

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 64/402 (15%), Positives = 111/402 (27%), Gaps = 51/402 (12%)

Query: 16  RDAEIASHKLMLRT----GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           RD     H  + R     G       G+   LP G      +   +R  +   G   +  
Sbjct: 8   RDH---DHHRLGRALGLYGTDPLLGAGLPYLLPDGASVRHALEEYVRGLEVADGYQHVHS 64

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P L   +L+V SG +  Y  +M    +   +  +  P+       I+R+  +SYR LP  
Sbjct: 65  PVLGKQELYVRSGHWAHYRADMFPPMEVGGEHFVLRPSLCPHHALIYRAQARSYRELPLR 124

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
             ++   FR E     G +     +  +       PE                +  LGL 
Sbjct: 125 IAELGGMFRAEPSGTLGGLTRVRAIHLNDAHLFCAPESLAGEVAGALALIRTAYRALGLA 184

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDFDDIISLNSIVE 250
               R                    GE   +  ++   +    +                
Sbjct: 185 PSRYRLSL----------------PGEDAKYALAEGVWERSAAALAEALAGAGLDWEEER 228

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    DV   +  D+      +S    +      FG  Y             +  
Sbjct: 229 GEAAFYGPKIDV---QARDAAGREFTLSTVQADFHQPTAFGLDYR-------AADGSRPR 278

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  V A +   H G    W   V    + +       +   +A E    
Sbjct: 279 PVMVHRSVLGSLERVLARLIEVHGGAFPAWLAPVQVGVVPVG------EEQEEAAESFVR 332

Query: 371 RLSKVGCDVFWDDM-----GEQIGSQFAVADLLGFPLQVIVG 407
           R    G                + ++   A L   P   ++G
Sbjct: 333 RCRAAGLRA----RRYPAHAGTLAARVRQARL--VPHLAVLG 368


>gi|295394795|ref|ZP_06805010.1| glycyl-tRNA synthetase beta subunit [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972391|gb|EFG48251.1| glycyl-tRNA synthetase beta subunit [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 458

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 67/456 (14%), Positives = 142/456 (31%), Gaps = 58/456 (12%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNRTGAIE----MSVPTLQSA 77
           R G + Q      G    + + PLG +  +N+  +  +E  R    E    +    +   
Sbjct: 14  RRGFVFQAGDIYGGSRSAWDYGPLGVELKENIKRLWWQEFVR--GREDMVGLDSSIILPR 71

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            +W  SG  +++   ++     + +        E  +        ++           Q 
Sbjct: 72  QVWEASGHVETFVDPLVESLHTHKR-YRADHLIEAYVAKH-GKEPENGLADINDPETGQP 129

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR---------- 187
               E +   G+M++    + D          +       F + +    R          
Sbjct: 130 GNWTEPQQFSGLMKTFLGAVDDGQGLHYLRPETAQGIFVNFNNVVTAARRKPPFGIGQVG 189

Query: 188 ----LGLKSIPMRAESGPIGGDLSHEFIVLADT----GETQVFCSKDFMDFPIPSENTDF 239
                 +        +          F    D      E    C   F+D  I  +N   
Sbjct: 190 KAFRNEITPGNFIFRTREFEQMEIEYFTHPDDAQKYFDEWVDACWNWFVDLGINPDNMRK 249

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLP 297
            D+       ++      AT D+  +  F   P  + +   G+     F     T+ S  
Sbjct: 250 FDV-----PADERAHYSDATIDLEYKFGFQGNPWGELM---GVANRTDFDLSNHTEASGA 301

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPDSV 344
               F  A G  +   +     G  R + A +  ++                       +
Sbjct: 302 KLQYFDQATGDRYTPYVIEPSFGLTRSMMAFLVDAYSEDEAPNTKGGTDKRIVLKLDPRL 361

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP K +++ + + ++        + A L K   ++ +DD G  IG ++   D +G P  +
Sbjct: 362 APVKAAVLPL-SRNEKLSPQARALAANLRKRW-NIDFDDAGA-IGRRYRRQDEIGTPFCI 418

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                 + D+ V ++ R    +E +++++V NY + 
Sbjct: 419 TFDFDSLDDNAVTVRKRDDMSQERIAIDDVENYLAQ 454


>gi|227874941|ref|ZP_03993092.1| glycine--tRNA ligase [Mobiluncus mulieris ATCC 35243]
 gi|227844461|gb|EEJ54619.1| glycine--tRNA ligase [Mobiluncus mulieris ATCC 35243]
          Length = 485

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 61/434 (14%), Positives = 131/434 (30%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+         R+    + +    +    +W  SG   ++   ++   
Sbjct: 56  WDYGPLGVELKENIKKAWWNYMVRSREDVVGLDSSVILPPKVWEASGHLKAFTDPLIECT 115

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + +        E+        +  +            +K +  E R   G++++    
Sbjct: 116 SCHKR-YREDDLQEKYAEKHGIDNPDTVDMAVVACENCGVKGQWTEPRAFSGLLKTYLGP 174

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGGDLSH 208
           + D          +       F + +            ++G            I      
Sbjct: 175 VDDESGLHFLRPETAQGIFINFANVMNSARMRPPFGIGQIGKSFRNEITPGNFIFRTREF 234

Query: 209 E-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           E     F V   T E       D             D++       E+ +     T D+ 
Sbjct: 235 EQMELEFFVEPGTDEEWHQYWIDHRFAWYTDLGISADNLRFYEHPKEKLSHYSKRTVDIE 294

Query: 264 NEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               F+     E + ++ R      +     + S      +  A  +     +     G 
Sbjct: 295 YAFGFEGSKWGELEGIANRTDYDLSVH---AEASGQKLDYYDQAKDERWVPYVIEPSAGL 351

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       +AP K+++  +    +   D    I
Sbjct: 352 TRSLMAFLIEAYTEDEAPNTKGGVDKRTVLRLDPRLAPVKVAVFPLSKK-ETLPDLARGI 410

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A L K   +V +DD G  +G ++   D +G P  V V    VSD  V ++ R +  +E 
Sbjct: 411 AADLRKFW-NVDYDDAGA-VGRRYRRQDEIGTPYCVTVDFDSVSDHAVTVRERDSMTQER 468

Query: 429 MSLEEVINYASHRF 442
           + +E ++ Y   + 
Sbjct: 469 IPMEGLVAYLRDKL 482


>gi|153217652|ref|ZP_01951333.1| threonyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|124113402|gb|EAY32222.1| threonyl-tRNA synthetase [Vibrio cholerae 1587]
          Length = 159

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 56/160 (35%), Gaps = 11/160 (6%)

Query: 288 FYFGTKYSLPMSATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           F   T+    + AT+ G   +    V +    +G++     ++   + G    W      
Sbjct: 5   FNLPTR----LGATYVGESNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQA 60

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
             +++           D   ++  +L K G     D   E+IG +     L   P  ++ 
Sbjct: 61  VVVNIT------DKQADYAHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVC 114

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G + +   ++ ++ R         L++ I +     ++ +
Sbjct: 115 GDQEMEADEIAVRTRKGKDLGKFKLDDFIAHIQAEIASRK 154


>gi|219850181|ref|YP_002464614.1| YbaK/prolyl-tRNA synthetase associated region [Chloroflexus
           aggregans DSM 9485]
 gi|219544440|gb|ACL26178.1| YbaK/prolyl-tRNA synthetase associated region [Chloroflexus
           aggregans DSM 9485]
          Length = 531

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 8/183 (4%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+    + D  P     R+   G  VG I           +   + A G++  + +  
Sbjct: 345 VADIAQAVVGDPCPRCGTARIEGYGAAVGTITAPYQ-----TALPIQDAGGQNRPLWIAG 399

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             +    ++   +E  HD +GI+WP ++AP  I L+ I    +    A   +   L   G
Sbjct: 400 IELDLEPLIHLGVEQHHDERGIVWPAAIAPVDIHLVTIGRG-EAVVTAAHTLATELRNAG 458

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V  DD  E+ G +F  ADL+G P +++V  K ++  +VE++ R       ++  +VI 
Sbjct: 459 WSVLIDDRDERAGVKFNDADLIGAPWRLVVSEKLLAAGQVEVRRRTEVQATVIAQAKVIA 518

Query: 437 YAS 439
           +  
Sbjct: 519 WLQ 521



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 37/73 (50%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          M+ +  F   L++ P +A+  + +L+ R GM+   + G    LPLG   L  + AI+   
Sbjct: 1  MQLATLFGRTLRQAPAEADTLATQLLWRAGMLRTLNDGEPVLLPLGSAILRRLAAILGTA 60

Query: 61 QNRTGAIEMSVPT 73
              GA E+ VPT
Sbjct: 61 VQNDGAQEIVVPT 73


>gi|307701747|ref|ZP_07638761.1| glycine--tRNA ligase [Mobiluncus mulieris FB024-16]
 gi|307613005|gb|EFN92260.1| glycine--tRNA ligase [Mobiluncus mulieris FB024-16]
          Length = 461

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 61/434 (14%), Positives = 131/434 (30%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+         R+    + +    +    +W  SG   ++   ++   
Sbjct: 32  WDYGPLGVELKENIKKAWWNYMVRSREDVVGLDSSVILPPKVWEASGHLKAFTDPLIECT 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + +        E+        +  +            +K +  E R   G++++    
Sbjct: 92  SCHKR-YREDDLQEKYAEKHGIDNPDTVDMAVVACENCGVKGQWTEPRAFSGLLKTYLGP 150

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLGLKSIPMRAESGPIGGDLSH 208
           + D          +       F + +            ++G            I      
Sbjct: 151 VDDESGLHFLRPETAQGIFINFANVMNSARMRPPFGIGQIGKSFRNEITPGNFIFRTREF 210

Query: 209 E-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           E     F V   T E       D             D++       E+ +     T D+ 
Sbjct: 211 EQMELEFFVEPGTDEEWHQYWIDHRFAWYTDLGISADNLRFYEHPKEKLSHYSKRTVDIE 270

Query: 264 NEKLFD--SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               F+     E + ++ R      +     + S      +  A  +     +     G 
Sbjct: 271 YAFGFEGSKWGELEGIANRTDYDLSVH---AEASGQKLDYYDQAKDERWVPYVIEPSAGL 327

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       +AP K+++  +    +   D    I
Sbjct: 328 TRSLMAFLIEAYTEDEAPNTKGGVDKRTVLRLDPRLAPVKVAVFPLSKK-ETLPDLARGI 386

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A L K   +V +DD G  +G ++   D +G P  V V    VSD  V ++ R +  +E 
Sbjct: 387 AADLRKFW-NVDYDDAGA-VGRRYRRQDEIGTPYCVTVDFDSVSDHAVTVRERDSMTQER 444

Query: 429 MSLEEVINYASHRF 442
           + +E ++ Y   + 
Sbjct: 445 IPMEGLVAYLRDKL 458


>gi|239931399|ref|ZP_04688352.1| glycyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291439772|ref|ZP_06579162.1| glycyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291342667|gb|EFE69623.1| glycyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 460

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 57/443 (12%), Positives = 118/443 (26%), Gaps = 58/443 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    + + ++WV SG   ++   +    
Sbjct: 33  WDYGPLGVELKENLKRQWWRYMVTSREDVVGIDSSVILAPEVWVASGHVATFTDPLTECT 92

Query: 98  DRND----------KAMIYGPTHEEV----MTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
             +                G   E            +         F+          + 
Sbjct: 93  SCHKRFRADHLEEAYEEKKGHAPENGLADLNCPNCGNKGTFTEPKQFSGLLSTHLGPTQD 152

Query: 144 RPRFGVMR-------SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
                 +R          F      S    P G                           
Sbjct: 153 SGSIAYLRPETAQGIFTNFAQVQTTSRRKPPFGIAQMGKSFRNEITPGN----FIFRTRE 208

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
            E   +      EF V     E       +             +++       E+ +   
Sbjct: 209 FEQMEM------EFFVKPGEDEKWQEYWMEQRWNWYTGLGLREENMRWYEHPQEKLSHYS 262

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQM 314
             T+D+     F      +     G+     F  G  +K S    + F    G+     +
Sbjct: 263 KRTADIEYRFQFGGSEWGELE---GVANRTDFDLGAHSKASGQDLSYFDQEAGERWTPYV 319

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK---------------AHDQ 359
                G  R + A +    D        +          ++               + + 
Sbjct: 320 IEPAAGVGRAMLAFLL---DAYVEDEAPNAKGKLEKRTVLRLDHRLAPVKVAVLPLSRNP 376

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 + +   L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++
Sbjct: 377 ELSPKAKGLAQALRQNW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVR 434

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            R T  +E +SL+++  Y + R 
Sbjct: 435 ERDTMKQERISLDQIEGYLAARL 457


>gi|121701845|ref|XP_001269187.1| prolyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
 gi|119397330|gb|EAW07761.1| prolyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
          Length = 553

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 95/194 (48%), Gaps = 16/194 (8%)

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK--------GADGKDHYVQ 313
           V +        E    +   +E+GH F+ GT+YS  + A+           A  +   +Q
Sbjct: 362 VQDGDKCIKCTEGSLKTHTAVELGHTFHLGTRYSEVLQASVMVDQSLSGGAAKDQQVPMQ 421

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL- 372
           MG +GIG  R+++AV ++  D KG+ WP ++AP+++ ++  K  +       EK+Y  L 
Sbjct: 422 MGCHGIGVSRMISAVADNLADSKGLNWPRAMAPYEVVVVPGKGLETE----AEKVYDLLA 477

Query: 373 --SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDM 429
                  D   DD  + +G + + ADL+G+P+ ++VG  +     +E++ R    +RE++
Sbjct: 478 SKQSSPIDTILDDREKPMGWKLSDADLIGYPVIIVVGKGWKKQQTLEVQCRRLDNLREEV 537

Query: 430 SLEEVINYASHRFS 443
            L+++  +      
Sbjct: 538 PLDQLPAFVRSLLE 551



 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 126/258 (48%), Gaps = 7/258 (2%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
            LPLG +  D +  +I +     GA ++S+ ++ S +LW +SGR    G E+ R  DR +
Sbjct: 1   MLPLGLRVQDKLERLIDKHMQSVGASKVSLSSISSQELWEQSGRLKE-GSEVFRFHDRKE 59

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
              +  PTHEE +T +  S  KSYR+LP   YQI  K+RDE RPR G++R REF+MKD Y
Sbjct: 60  SRFLLAPTHEEEITTLVGSLTKSYRDLPVRVYQISRKYRDEARPRQGLLRGREFMMKDLY 119

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +FD   E +  +YN +  +Y  +F  L +  +   A+SG +GG LSHEF   +  GE  V
Sbjct: 120 TFDYNVEEALKTYNLVKAAYKNLFDELKIPYLVAAADSGNMGGSLSHEFHFPSSKGEDTV 179

Query: 222 F----CSKDFMDFPIPSENTDFDDIISLNSIVEQWT--APYAATSDVHNEKLFDSLPENK 275
                C   + D     +  +  +          +      A +S   +  L+ ++ ++K
Sbjct: 180 ISCSRCDHVYNDELADGKAHNLGEQQPHAGQASGFDTEGATAESSPTVSTDLWMAISKDK 239

Query: 276 RVSARGIEVGHIFYFGTK 293
               RG           +
Sbjct: 240 NTLVRGWYPKFSMQQTEQ 257


>gi|325102964|ref|YP_004272618.1| glycyl-tRNA synthetase [Pedobacter saltans DSM 12145]
 gi|324971812|gb|ADY50796.1| glycyl-tRNA synthetase [Pedobacter saltans DSM 12145]
          Length = 490

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 63/486 (12%), Positives = 142/486 (29%), Gaps = 68/486 (13%)

Query: 20  IASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQN--RTGAIEMSV 71
           + SH      G +   S        +Y +  LG +  +N+ A   +         + +  
Sbjct: 12  VISHAKE--YGFVFPSSEIYDGLSAVYDYGQLGAELKNNIKAYWWKSMVQLNENIVGIDS 69

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
                  +W  SG  D +   M+   D   +        +++              L   
Sbjct: 70  AIFMHPKIWKASGHVDGFNDPMIDNKDSKKRYRADQLLEDKIARYEKDGKQDKANQLQEE 129

Query: 132 F----------YQIQLKFRDELRPRFGVMRSR----EFLMKDAYSFDLTPEGSKHSY--- 174
                          L    E+       R+     +F +  +       EGS   Y   
Sbjct: 130 MDKALNDDNLARLKDLIIEHEIACPVSGTRNWTDVRQFNLMFSTQMGAMAEGSDEVYLRP 189

Query: 175 --------------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
                             +       ++G            I      E +   +     
Sbjct: 190 ETAQGIFVNFLNVQKSGRMKIPFGIAQIGKAFRNEVIARQFIMRMREFEQM---ELQFFV 246

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-----TAPYAATSDVHNEKLFDSLPENK 275
              ++             +   +  N    ++      A YA  +     +      E +
Sbjct: 247 KPGTEMEWYKKWKETRLKWHLALGTNPAKYRFHDHTKLAHYANAAVDIEFEFPFGFKEVE 306

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            + +R            ++S      F     + +   +    IG  R   A + ++++ 
Sbjct: 307 GIHSRTDFDLKQHQ---EFSGKKLQFFDPEINQSYVPYVVETSIGVDRFFLATLINAYEE 363

Query: 336 KG------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           +             +     +AP+K +++ +   D    +   +I  RL  +  +V +D+
Sbjct: 364 QDLSTEDKKDSRTVLHLHPVLAPYKAAVLPLTKKD-GLPEKAREIMNRLK-LDYNVTYDE 421

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               IG ++   D +G P  + V  + + D+ V I+HR +  +E +S+ ++ +       
Sbjct: 422 KD-SIGKRYRRQDAIGTPFCITVDHQSLEDNTVTIRHRDSMEQERISIADL-DRIIGELV 479

Query: 444 NNRPVL 449
           + + VL
Sbjct: 480 SWKNVL 485


>gi|257068863|ref|YP_003155118.1| glycyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
 gi|256559681|gb|ACU85528.1| glycyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
          Length = 463

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 59/433 (13%), Positives = 131/433 (30%), Gaps = 38/433 (8%)

Query: 40  YSWLPLGQKALDNVN-AIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     R      G  + +    +    +W  SG  +++   ++   
Sbjct: 36  WDYGPLGVELKENIKKQWWRTFVQSRGDMVGLDSSIILPKRVWEASGHVETFTDPLVECK 95

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             +++        E           +S                 E +   G++++    +
Sbjct: 96  SCHNR-FREDHLLEAFEAK-KGRAPESGMAEIACPNCGTRGDFTEPQEFSGLVKTYLGAV 153

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLSHE 209
                       +       F++ +    +         G            I      E
Sbjct: 154 SSEAGLHFLRPETAQGIFVNFLNVVNATRQKPPFGIGQIGKAFRNEITPGNFIFRTREFE 213

Query: 210 FIV-----LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +       A+  E Q     +           D D++   +    +     AAT D+  
Sbjct: 214 QMEIEYFTPAEQAEAQFDEWVEACWNWFIDLGIDADNLRRFDVPDSERAHYSAATIDLEY 273

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F      + +   GI     F     T  S      F  A  + +   +     G  
Sbjct: 274 RFGFTGSEWGELM---GIANRTDFDLSSHTDASGTKMQYFDQAANERYTPYVIEPSFGLT 330

Query: 323 RVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           R + A +  ++                       +AP K++++ + +  +       ++ 
Sbjct: 331 RSMMAFLVDAYTEDEAPNAKGGVDKRTVLKLDPRLAPVKVAVLPL-SKSEALVPRATELA 389

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L +   +V  D     IG ++   D +G P  V V  +   D  V I+ R +  +E +
Sbjct: 390 DQLRRHW-NVEMDVTQA-IGRRYRRQDEIGTPFCVTVDFETAEDQSVTIRERDSMAQERV 447

Query: 430 SLEEVINYASHRF 442
           +L++V +Y + R 
Sbjct: 448 ALDQVESYLAARL 460


>gi|323464278|gb|ADX76431.1| histidyl-tRNA synthetase [Staphylococcus pseudintermedius ED99]
          Length = 423

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 63/410 (15%), Positives = 114/410 (27%), Gaps = 17/410 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        +   + +        E+  P  +S DL+        D   KEM    D+ 
Sbjct: 12  LPEETTKWRYIENQLHKLMEVYNYQEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKG 71

Query: 101 DKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           D+++   P     +      + ++   N P   Y     FR E + +    +  +F ++ 
Sbjct: 72  DRSITLRPEGTAAVVRSYIENKMQGLPNQPVKLYYNGPMFRYERKQKGRYRQFNQFGVEA 131

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFIVLADTG 217
                  P         +   Y     +     I     AES     +   E        
Sbjct: 132 --IGAENPSMDAEVLAMVMHIYQSFGLKKLKLVINSVGDAESRVDYQNALRE-HFQPVIH 188

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE---- 273
                C +     P+   +   D            T      S  + E +   L      
Sbjct: 189 NYCKDCQQRIKTNPMRILDCKVDRHQPEIQTAPSITDFLNDYSKDYFEAVKSHLDRLGVP 248

Query: 274 ----NKRVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                K V          F           A T     G+ + +     G     +  A+
Sbjct: 249 YEVDPKLVRGLDYYTHTAFELMMDNEAYDGAITTLCGGGRYNGLLELLDGPSETGIGFAL 308

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                              +   + +    +   D    +  RL   G  V  D +  ++
Sbjct: 309 SIERLLLALEEEGIEFPQMQHIDLFVATMGEKADDFAVTLLNRLRHAGISVDKDYLSRKL 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             Q   AD L     +++G + +   +V +KH  TG  + M  EE+ +Y 
Sbjct: 369 KGQMKQADRLNATYTIVIGDQELEAGEVAVKHMATGESQTMKFEEIESYI 418


>gi|323358281|ref|YP_004224677.1| glycyl-tRNA synthetase (class II) [Microbacterium testaceum
           StLB037]
 gi|323274652|dbj|BAJ74797.1| glycyl-tRNA synthetase (class II) [Microbacterium testaceum
           StLB037]
          Length = 462

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/438 (14%), Positives = 137/438 (31%), Gaps = 45/438 (10%)

Query: 40  YSWLPLGQKALDNV-----NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +N+        +R   +  G   +    +    +W  SG   ++   ++
Sbjct: 34  WDYGPLGTELKENIRRQWWQTFVRGRGDMVG---LDSSVILPKRVWEASGHVATFTDPLV 90

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
                + +        E+      R       ++P            E +   G++++  
Sbjct: 91  ECLHCHKR-FRADNLIEDFEARKGRKAENGLADVP-CPNCGTKGQYTEPKSFSGLVKTYL 148

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------------LGLKSIPMRAESG 200
            ++ D          +       F + L    R                +        + 
Sbjct: 149 GVVDDESGLYFLRPETAQGIFVNFSNVLTASRRKPPFGVGQVGKAFRNEITPGNFIFRTR 208

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                    F   A+  E      +   ++ I     D +++   +   +      A T 
Sbjct: 209 EFEQMEIEYFTPPAEANEWFEHWVEACWNWFI-DLGIDPENMKRFDVPEDDRAHYSAGTI 267

Query: 261 DVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           DV     F      E   V+ R           ++ S      F  A G+ +   +    
Sbjct: 268 DVEYRFGFPGKEWGELMGVANRTDYDLKSH---SEASGQSLTFFDQASGEKYTPYVIEPS 324

Query: 319 IGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDAC 365
            G  R + A +  S+  + +                  +AP K++++ + + ++      
Sbjct: 325 FGLTRAMMAFLVDSYREEEVPNAKGGTDTRTVLKLDPRLAPVKVAVLPL-SRNERLSPLA 383

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            +    L   G ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R T  
Sbjct: 384 RETADTLRAAGWNIDFDDAGA-IGRRYRRQDEIGTPFCVTVDFDSLDDNAVTVRDRDTMG 442

Query: 426 REDMSLEEVINYASHRFS 443
           +E + L+ +  Y + R  
Sbjct: 443 QERIGLDALHGYLAERLR 460


>gi|228475224|ref|ZP_04059950.1| histidine--tRNA ligase [Staphylococcus hominis SK119]
 gi|228270835|gb|EEK12237.1| histidine--tRNA ligase [Staphylococcus hominis SK119]
          Length = 425

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/411 (13%), Positives = 120/411 (29%), Gaps = 19/411 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   + E        E+  P  +S DL+        D   KEM    D+ D+++   
Sbjct: 19  WRYIENKLDELMKLYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLR 78

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +      + ++   N P   Y     FR E + +    +  +F ++        
Sbjct: 79  PEGTAAVVRSYIENKMQGEPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEA--IGAEN 136

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P         +   Y     +     I    +         +E ++         FC+  
Sbjct: 137 PSIDAEVLAMVMHIYESFGLKHLKLVINSIGDQAS--RKEYNEALMKHFEPVIDTFCNDC 194

Query: 227 FMDFPIPSENTDFDDIISLNSIV-----------EQWTAPYAATSDVHNEKLFDSLPENK 275
                          I      V           ++  A Y A     ++   + + +  
Sbjct: 195 QSRLHTNPMRILDCKIDRDKEAVKHAPRITDYLNDESKAYYEAVKHHLDQLDINYVEDPN 254

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            V          F           A T     G+ + +     G     +  A+      
Sbjct: 255 LVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPKQTGIGFALSIERLL 314

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                    +   +   + +    +       K+   L K G     D +  +I  Q   
Sbjct: 315 LALEEEDIELNVDEDFDLFVVTMGKKAEQYSVKLLNDLRKHGVKADKDYLNRKIKGQMKQ 374

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           AD L     +++G + + ++K+++K   TG  + + L+EV+++ +    N 
Sbjct: 375 ADRLNAKYTIVIGDQELDNNKIDVKEMSTGETKTIQLDEVVSFFNKEKENK 425


>gi|119873200|ref|YP_931207.1| threonyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
 gi|166225488|sp|A1RV82|SYT_PYRIL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119674608|gb|ABL88864.1| Anticodon-binding domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 609

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 111/357 (31%), Gaps = 47/357 (13%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKD 159
           D  +I           + +  + SY++LPF   +I   +R E       + R R F M D
Sbjct: 278 DTDLILRYAACFQQFAMVKDWVISYKHLPFGVIEIADSYRHEQPGETVLLFRLRRFFMPD 337

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            + F      +     K+     R   +LG   + +   +     +  +  I        
Sbjct: 338 LHIFTRDMAEAIDISFKLHEVIFREIEKLGRTYVSLYNVTEEFYKEYKNYLI-------- 389

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                          E    +    L  I+      +    + H   + D L   + ++ 
Sbjct: 390 ---------------ELAKREGKPILVRILPGQKYYWVLNVEFH---IIDELGRPREIAT 431

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
             I++G         +      +   + +  Y  +    I         +      K   
Sbjct: 432 FQIDIG--------NAKRFGIKYVDENNQVRYPVIIHTAILGSVERYLYVVFDTMAKAEK 483

Query: 340 WPD------SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                     ++P ++ +I I   +        +I  +L   G  V  DD  E +  +  
Sbjct: 484 AGKIPRLPTWLSPVQVRIIPITRDN---LKYAVEIADKLETEGIRVDIDDRDETLSKKIR 540

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN--NRPV 448
            A++   P   +VGSK  ++  + ++ R  G  +    EE+I           NRP+
Sbjct: 541 DAEVSWIPYICVVGSKEETEGVLSVRERGGGQYKTTP-EELIKKIKEETRGYPNRPL 596


>gi|314936256|ref|ZP_07843603.1| histidine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
 gi|313654875|gb|EFS18620.1| histidine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
          Length = 425

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/411 (13%), Positives = 121/411 (29%), Gaps = 19/411 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   + E        E+  P  +S DL+        D   KEM    D+ D+++   
Sbjct: 19  WRYIENKLDELMKLYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLR 78

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +      + ++   N P   Y     FR E + +    +  +F ++        
Sbjct: 79  PEGTAAVVRSYIENKMQGEPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEA--IGAEN 136

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P         +   Y     +     I    +         +E ++         FC+  
Sbjct: 137 PSIDAEVLAMVMHIYESFGLKHLKLVINSIGDQAS--RKEYNEALMKHFEPVIDTFCNDC 194

Query: 227 FMDFPIPSENTDFDDIISLNSIV-----------EQWTAPYAATSDVHNEKLFDSLPENK 275
                          I      V           ++  A Y A     ++   + + +  
Sbjct: 195 QSRLHTNPMRILDCKIDRDKEAVKHAPRITDYLNDESKAYYEAVKHHLDQLDINYVEDPN 254

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            V          F           A T     G+ + +     G     +  A+      
Sbjct: 255 LVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPKQTGIGFALSIERLL 314

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                    +   +   + +    +       K+   L K G     D +  +I  Q   
Sbjct: 315 LALEEEDIELNVDEDFDLFVVTMGKKAEQYSVKLLNDLRKHGVKADKDYLNRKIKGQMKQ 374

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           AD L     +++G + ++++K+++K   TG  + + L+EV+++ +    N 
Sbjct: 375 ADRLNAKYTIVIGDQELNNNKIDVKEMSTGETKTIQLDEVVSFFNKEKENK 425


>gi|220915162|ref|YP_002490466.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953016|gb|ACL63400.1| prolyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 508

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/459 (13%), Positives = 138/459 (30%), Gaps = 74/459 (16%)

Query: 3   RSKYFLPILQENPRD-AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
            S+++L +++    D AE ++    +R  M+ +         P G    ++V  ++    
Sbjct: 16  FSEWYLEVIKA--ADLAESST----VRGCMVIK---------PWGYALWEHVQRVLDGMF 60

Query: 62  NRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             TG +    P      L   E+   + + KE   +                        
Sbjct: 61  KATGHVNAYFPLFIPLSLLEKEAAHVEGFAKECAVVTHHR-------------------- 100

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
                                 L  R G +     L +       +      S+ +   S
Sbjct: 101 ----------------------LEARDGKLVPVGELEEPLVVRPTSETIIGESFARWVQS 138

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +   +   +  +R E        + EF+     G T     ++ +D  +        
Sbjct: 139 YRDLPLLINQWANVVRWEMRTRMFLRTAEFL--WQEGHTAHATEQEAIDETMQMLGIYAR 196

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   +        A+       +     E      + ++ G   + G  ++     
Sbjct: 197 -FAEEWMALPVVQGEKTASERFPG-AVRTYCIEAMMQDRKALQAGTSHFLGQNFARASGI 254

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH--- 357
            F+   G   +    S+G+ + R++ A+I +  D  G++ P  +AP ++ +I +      
Sbjct: 255 QFQDEKGALTHAWTTSWGL-STRMIGAMIMTHGDDDGMVCPPRLAPQQVVIIPVIQKPEV 313

Query: 358 DQVCRDACEKIYARLSK-----VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +     C ++   L           V  D    Q   +       G P+++ VG K + 
Sbjct: 314 REQVLAWCAELKRELEAQSYAGAPVRVHLDARDVQGAKKSWEWIKKGAPIRLEVGPKDIE 373

Query: 413 DSKVEI--KHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
              V +  + R    ++ +   E++          +  L
Sbjct: 374 KGAVFMGRRDRKPREKQSVPRGELVAGVGALLQEIQDAL 412


>gi|229062098|ref|ZP_04199423.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH603]
 gi|228717250|gb|EEL68925.1| Histidyl-tRNA synthetase 2 [Bacillus cereus AH603]
          Length = 476

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 125/414 (30%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    R+   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGSVELWQYIEGQARDICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDSLIA-HFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L S     T      S V+ +K+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMSTAPSITEYLNEDSAVYYDKVQELLTMMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   KI   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDQAAKIAFDLRKAGLAVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLNAKYVAVLGEDELDKGIINLKDMATGGQEEVALDVFASYVAEKL 475


>gi|20807458|ref|NP_622629.1| glycyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
 gi|59798595|sp|Q8RB46|SYG_THETN RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|20515983|gb|AAM24233.1| Glycyl-tRNA synthetase, class II [Thermoanaerobacter tengcongensis
           MB4]
          Length = 461

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/448 (14%), Positives = 140/448 (31%), Gaps = 65/448 (14%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + + PLG +  +N+  I  ++       E      +    L + ++WV SG   S+   +
Sbjct: 34  WDYGPLGVEMKNNIKRIWWKKFI----QESPYNVGIDSAILMNREVWVASGHVASFSDPL 89

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           +   +   +        + +        I+ + N     +  + K              R
Sbjct: 90  MDCKECKSRFRADQLIEDYIKEKGLDISIEGWTNEQMMEFIKEHKVPCPKCGAHNFTEIR 149

Query: 154 EFLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMR 196
           +F +       +T +     +                             ++G       
Sbjct: 150 KFNLMFKTYVGVTEDSKSEVFLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEI 209

Query: 197 AESGPIGGDLSHEFIV---LADTGE-------TQVFCSKDFMDFPIPSENTDFDDIISLN 246
                I      E +        GE        + FC    ++F +  EN  F D     
Sbjct: 210 TPGNFIFRTREFEQMELEFFCKPGEDMEWFNYWRQFCMDWLVEFGLKRENLRFRD----- 264

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--VGHIFYFGTKYSLPMSATFKG 304
              ++  + Y+  +            E   ++ R       H+ + G         T+  
Sbjct: 265 -HKKEELSHYSTATTDIEYNFPFGWGELWGIANRTDYDLRQHMEHSGEDM------TYTD 317

Query: 305 A-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIK 355
              G+ +        +G  R++ A +  ++D + +            ++AP K+++  + 
Sbjct: 318 PVTGEKYIPYCIEPSVGVDRLMLAFLVDAYDEEEVEGETRVVLRLHPAIAPVKVAVFPLS 377

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +A  KIY  L K      +D+ G  IG ++   D +G P  V       +D K
Sbjct: 378 KK---LNEAAYKIYLDLKKK-FPAEYDESG-SIGRRYRRQDEIGTPFCVTYDFDSENDHK 432

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           V I+ R T  +  + +++V  Y   +  
Sbjct: 433 VTIRDRDTMEQIRIDIDQVDKYLEEKLK 460


>gi|330977709|gb|EGH77612.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 174

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 62/180 (34%), Gaps = 15/180 (8%)

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVV 325
           L D L    +     ++    F    + S    A +   D        +    +G+    
Sbjct: 3   LKDCLGRVWQCGTLQLD----FNLPIRLS----AEYVSEDNSRKNPVMLHRAILGSFERF 54

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++   ++     +P  +AP +  ++NI        D   ++   L++ G     D   
Sbjct: 55  IGILIEHYE---GAFPAWLAPTQAVIMNITDK---QADFALEVEKTLAESGFRAKSDLRN 108

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           E+IG +     LL  P  +++G + V    V ++ R       M + +   + +   S  
Sbjct: 109 EKIGFKIREHTLLKVPYLLVIGDREVEMQTVAVRTREGADLGSMPVAQFAEFLAQAVSRR 168


>gi|321309527|ref|YP_004191856.1| prolyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
 gi|319801371|emb|CBY92017.1| prolyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
          Length = 467

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 138/416 (33%), Gaps = 73/416 (17%)

Query: 37  KGIY----SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGK 91
            G+          G    + +   I  +  + G   +S PT    A++  E  R   +  
Sbjct: 24  PGLVKGTLFIGHRGWNIWEKIRDFIDAKYKQKGIKNVSFPTFIPVAEIEREKSRLSGFNP 83

Query: 92  EML---RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           E+    R  D   +     PT E + +  FR+ ++SY +LP  F Q    FR E +    
Sbjct: 84  EIYLVSRSGDEERQNFFLRPTSEILFSHYFRNILESYEDLPLLFNQWCNVFRAE-KNTKA 142

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            +R+ EF                                         A +  +  + + 
Sbjct: 143 FLRTCEF-------------------------------------HWQEAHTLHLSKEEAM 165

Query: 209 EFIVLADTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           E++      ET     KD ++   +  E T  +        +                 L
Sbjct: 166 EYLKFF--HETYKSLVKDLLNIAFLEGEKTVNERFPGSEKTL----------------TL 207

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              +P+ +      +++    Y    ++      +   +    Y    S G  + R++ A
Sbjct: 208 EAIMPDGQ-----ALQIATSHYLSKNFTETFDVKYTSRENVVSYPHQLSAGC-STRLIGA 261

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +I S  D  G++ P S+    I  + I        +  +K    L   G  V WD     
Sbjct: 262 LIMSHGDDSGLVLPLSMFDVHIKFLIINGAVTEGSELHKKFSDELK--GYKVEWDFSSRS 319

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G +    +++G P+ VI+G   +  +   +K RL+  +  + ++++I+       
Sbjct: 320 FGYKIKNEEMIGTPVSVILGPSEIKSNWALVKTRLSESKVSIPMDQLISKIKETID 375


>gi|91203209|emb|CAJ72848.1| similar to histidyl-tRNA synthetase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 436

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/432 (13%), Positives = 127/432 (29%), Gaps = 22/432 (5%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GR 85
           ++G + +  +G    LP        +    R+E    G  E+  P  +   L+V S    
Sbjct: 8   KSGYVFKAPRGTEDVLPGNWDLWKKLEEAGRQEFELCGYYEIRTPVFEDTRLFVRSIGEA 67

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            D   KEM   +D  D ++   P +   +   +  +          +Y I  +FR E   
Sbjct: 68  TDIVEKEMYTFSDSEDSSITLRPENTAPVMRAYLEYELHKTKKFQKYYYIGPQFRKERPQ 127

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPI 202
                R R+F      +              + V         G           E  P+
Sbjct: 128 AG---RLRQFHQMGIEAVGANDPLLDVETIGVAVRIFDRIGLKGYNVKINSIGCNECRPV 184

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
             ++  + +   +    ++ C            +   +    +   +            +
Sbjct: 185 FRNIIKDILCEREMALCEL-CQSRLHRNVFRILDCKNEKCKEVTHQLPPVNDYLCEKCRI 243

Query: 263 HNEKLFDSLP--------ENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKD 309
           H   + ++L         +   V         +F       G + ++     +       
Sbjct: 244 HANSVREALVGIGIPYIADAHLVRGLDYYTKTVFEITHSSLGARDAICAGGRYDNLIADM 303

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               +G+ G         +   +   K               + I + D+  +  C  + 
Sbjct: 304 GGPSIGAVGFAIGMEATILAMQNVLNKKKQSVYLEINEPAPTVYIVSIDKEIKKHCFYLL 363

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L K G     D  G    +Q  VA+ LG    +++G   +    V++K   TG    +
Sbjct: 364 NLLRKSGISADLDYEGRSPKAQMRVANKLGVKYVLVLGPDELERGNVKVKIMETGEEVIV 423

Query: 430 SLEEVINYASHR 441
             +E++N+   +
Sbjct: 424 RQDEILNWFLQK 435


>gi|284929416|ref|YP_003421938.1| histidyl-tRNA synthetase [cyanobacterium UCYN-A]
 gi|284809860|gb|ADB95557.1| histidyl-tRNA synthetase [cyanobacterium UCYN-A]
          Length = 432

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/429 (13%), Positives = 124/429 (28%), Gaps = 26/429 (6%)

Query: 37  KGIYSWLP--LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
            G    LP  +G      V A   +   R    E+  P  ++  L+        D   KE
Sbjct: 8   PGTRDILPEEIGY--WQYVEATAAKILGRAMYREIRSPIFENTSLFERGIGEATDVVSKE 65

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    DR+D+ +   P     +   +  +           +     FR E        R 
Sbjct: 66  MYTFPDRSDRLVTLRPEGTAGVARAYLQNNLHSLGGVQRLWYSGPMFRYERPQAG---RQ 122

Query: 153 REFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           R+F            P                +  +    +I    +      +L  E +
Sbjct: 123 RQFHQIGLELIGARDPRADVEVIALATDVLKFLGLKQLKLNINSIGDKND--RNLYREAL 180

Query: 212 VL---ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +    +   +  +      +  P+   ++  +    +N             S  H +++ 
Sbjct: 181 INYFLSHKEDLDIDSQNRLLKNPLRILDSKNEKTKEINKNAPNILHFLGKESQKHFDEVQ 240

Query: 269 DSLPENKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
             L +            RG++      F  +     + +     G+  ++     G    
Sbjct: 241 QLLTDLNINYQINPCLVRGLDYYTHTAFEIQSDNLGTQSTVCGGGRYDHLIEELGGTSTP 300

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                          ++     +P     + I +  +        +  +L      V  D
Sbjct: 301 --AVGWAIGVERLIMLLKQIECSPQHNPDVYIVSKGKKAEAIGLYLAQKLRSEELIVELD 358

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA---S 439
             G   G QF  AD     + +++G +   ++ +++K   T  +  M+  +++N+     
Sbjct: 359 MSGSNFGKQFKRADRSKASVCIVLGEEEAENNTLQVKWLHTKEQNSMTQVDLLNHITEFK 418

Query: 440 HRFSNNRPV 448
            + +  R V
Sbjct: 419 KQINKYREV 427


>gi|319892684|ref|YP_004149559.1| Histidyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162380|gb|ADV05923.1| Histidyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
          Length = 423

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/409 (15%), Positives = 119/409 (29%), Gaps = 15/409 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        +   + +        E+  P  +S DL+        D   KEM    D+ 
Sbjct: 12  LPEETTKWRYIENQLHKLMEVYNYQEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKG 71

Query: 101 DKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           D+++   P     +      + ++   N P   Y     FR E + +    +  +F ++ 
Sbjct: 72  DRSITLRPEGTAAVVRSYIENKMQGLPNQPVKLYYNGPMFRYERKQKGRYRQFNQFGVEA 131

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFI------ 211
                  P         +   Y     +     I     AES     +   E        
Sbjct: 132 --IGAENPSMDAEVLAMVMHIYQSFGLKKLKLVINSVGDAESRVDYQNALREHFQPVIHN 189

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              D  +         +D  +     +     S+   +  ++  Y      H ++L    
Sbjct: 190 YCKDCQQRIKTNPMRILDCKVDRHQPEIQTAPSITDFLNDYSKDYFEAVKSHLDRLGMPY 249

Query: 272 -PENKRVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             + K V          F           A T     G+ + +     G     +  A+ 
Sbjct: 250 EVDPKLVRGLDYYTHTAFELMMDNEAYDGAITTLCGGGRYNGLLELLDGPSETGIGFALS 309

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                             +   + +    +   D    +  RL   G  V  D +  ++ 
Sbjct: 310 IERLLLALEEEGIEFPQMQHIDLFVATMGEKADDFAVTLLNRLRHAGISVDKDYLSRKLK 369

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            Q   AD L     +++G + +   +V +KH  TG  + M  EE+ +Y 
Sbjct: 370 GQMKQADRLNATYTIVIGDQELEAGEVAVKHMATGESQTMKFEEIESYI 418


>gi|327311872|ref|YP_004338769.1| threonyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
 gi|326948351|gb|AEA13457.1| threonyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
          Length = 612

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 113/354 (31%), Gaps = 41/354 (11%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSREFLMKD 159
           D   I           + +  + SYRNLPF   +I   +R E       + R R F M D
Sbjct: 279 DVDSILRYAACFQQFAMAKDWVISYRNLPFGMLEIADSYRYEQPGETVLLFRLRRFYMPD 338

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            + F      +     K+         ++    + +   +         +++V     E 
Sbjct: 339 LHIFTKNLNEAIEVTYKLHEKIFEEIRKINRDYVSLYNITAEFY-KGHKDYLVELAKREG 397

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           +            P       +      +  ++              + D L   + ++ 
Sbjct: 398 K------------PILLRILPEQKYYWVLNVEF-------------HIIDELGRPREIAT 432

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKG 337
             I+VG+   FG          +   + K  Y  +    I     R + A+ +++   + 
Sbjct: 433 FQIDVGNAMRFG--------IKYIDEENKVKYPVIIHTAILGSVERYIFALFDTAALMEK 484

Query: 338 IIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                 +  +   +   I   ++        +   L + G  V  DD  E +  +   A+
Sbjct: 485 RGEVPRLPTWITPVQVRIIPVNREYLRPASDLADELERRGIRVDIDDREETLSRKIRDAE 544

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN--NRPV 448
               P  +++G K  S + + ++ R  G +  MS ++++       S    RP+
Sbjct: 545 REWIPYIIVIGQKEASSNMLTVRIRGKG-QVQMSRQDLVEVVEKEISGFPRRPL 597


>gi|70953193|ref|XP_745713.1| prolyl-t-RNA synthase [Plasmodium chabaudi chabaudi]
 gi|56526123|emb|CAH76923.1| prolyl-t-RNA synthase, putative [Plasmodium chabaudi chabaudi]
          Length = 498

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 79/474 (16%), Positives = 159/474 (33%), Gaps = 64/474 (13%)

Query: 24  KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           +L+ R   I +   G+Y+ LPLG + ++ +   I     +  +  + +  LQ   LW  S
Sbjct: 29  ELLFRANYIKEI-NGLYNMLPLGLRVINKIKDFINNYLEKINSHSVFLSILQPKRLWNIS 87

Query: 84  GRYDSYGKEM------------------LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            R   Y +E                   ++    +D  ++     E  +T I   +  + 
Sbjct: 88  DRSKLYSEEFLYVYKQKQQKVDTDIGESVKKKFEDDGNILSPTCEESALTLINEIYNLNA 147

Query: 126 --RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
             ++ P   +Q   KFR+E R    + +S+EFLMKD YSF    +     Y      Y  
Sbjct: 148 TEKHFPLLIHQYNYKFRNEKRLEKSLFKSKEFLMKDGYSFHTNEKCMNEIYEIYKECYNN 207

Query: 184 IFHRLGLKSIPMRAESGP-IGGDLSHEFIVLADTGETQVFCSKDFM-DFPIPSENTDFDD 241
           IF++LGLK   ++      +    SHE+ +L   G+ +       + D+     +  F +
Sbjct: 208 IFNKLGLKYNIIKKRKKDKMNALESHEYQILCRDGKFKEGAHTFKLGDYYSKKLDIHFLN 267

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMS 299
             +    +  +   Y    +     L D+  ++  +           Y     + S   S
Sbjct: 268 KRNEKKYI--YMGSYGIGINRLLYFLIDNFYDDDGIKLPSPIAPFSVYLIQTNQKSKYSS 325

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
              K    K                  +  +        +  D           + ++D 
Sbjct: 326 EKVKKIVNKLKNEINEKGFSKIHDPPIS--DDQTVSPDSVHNDEEEKEDALYNTLNSNDM 383

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK---- 415
                   +Y  L     D ++D+    +  +    DL+G   +VI+  K     K    
Sbjct: 384 EYV-LTIWLYTILKVNNIDTYYDNTDLHLSRKLKNCDLIGASNRVIINLKSDEKKKIKLP 442

Query: 416 ------------------------------VEIKHRLTGIREDMSLEEVINYAS 439
                                         +E K+R +   +++++ +++N+ +
Sbjct: 443 TDFYNYLDDNQNNKYNIFHNKLYQAFKNIRIEYKNRFSNETKNITIHDLLNHFN 496


>gi|330507458|ref|YP_004383886.1| threonyl-tRNA synthetase [Methanosaeta concilii GP-6]
 gi|328928266|gb|AEB68068.1| threonyl-tRNA synthetase [Methanosaeta concilii GP-6]
          Length = 621

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/438 (13%), Positives = 138/438 (31%), Gaps = 51/438 (11%)

Query: 24  KLMLRTGMIHQH---SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW 80
           +LM R  ++        G   + P G+     +  ++ E+    GA+E+  P +   +  
Sbjct: 204 ELMRRLELVDYEPGSDSGNMRYYPKGRLVKSLLETLVLEKAADMGAMEVETPIMYDMEHP 263

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-F 139
                 D +        D + + +            +      SY++LP    ++    F
Sbjct: 264 TLKKYLDRFPAR-QYQIDSDKRKLFLRFAACFGQFLMGHDMSISYKSLPLKMIEMTRYSF 322

Query: 140 RDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           R E R    G+ R R F M D ++       +   + K +++ + +   +GL        
Sbjct: 323 RREQRGELVGIRRLRAFTMPDMHTMSRDMHSAIEEFRKQYLASISVLKEVGL-------- 374

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISLNSIVEQWTAPYA 257
                           +  + +V        +    E      DII    ++E W   + 
Sbjct: 375 ----------------EVEDYEVAIRFTRDFYKENQEFIAGLVDIIKKPVLIEMWDERFF 418

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                      D++ +   +S   I+V        + +      +    G      +   
Sbjct: 419 YFVLKFEFNFVDTMDKASALSTVQIDV--------ENAERYDINYIDESGARRRPILLHC 470

Query: 318 GIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSK 374
                  RV+ A++E +           +  +       I    +  ++    +   L  
Sbjct: 471 SPSGAIERVMYAILEKAARLSLQGKLPMLETWLSPTQVRIIPVAERHQERALALAGIL-- 528

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-----LTGIREDM 429
            G     DD  E +G +   A     P   ++G + +   ++ +  R      +  ++ M
Sbjct: 529 -GFRTDIDDRDETVGKKIRDAGREWVPYVAVIGDEELQSGRLAVTIRSESTPKSPAKKSM 587

Query: 430 SLEEVINYASHRFSNNRP 447
           +++E+    +   +  +P
Sbjct: 588 TVDELKERLTGE-TKGKP 604


>gi|323457093|gb|EGB12959.1| hypothetical protein AURANDRAFT_18779 [Aureococcus anophagefferens]
          Length = 606

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/401 (15%), Positives = 128/401 (31%), Gaps = 53/401 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRY--DSYGKEML 94
           G     P G    D +   +      +GA     P L     L  E+     + + KE  
Sbjct: 142 GCMVIKPWGMAVWDRLRDELDGRIKASGAENAYFPLLIPRSFLAKEAEHCHVEGFAKECA 201

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            +      A   G    +   ++    I                                
Sbjct: 202 VVTHHRLAADGKGGLEPDPAAELDEPLI-------------------------------- 229

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                      +     H + K   S+  +  ++   +  +R E        S EF+   
Sbjct: 230 -------IRPTSETMIWHMFGKWINSHRDLPLKINQWANVVRWEMRTRPFLRSSEFL--W 280

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             G T      + +       +    +++     V       +A           ++ E 
Sbjct: 281 QEGHTAHATRDEALATAEEMLDVYA-EVVEHFLAVPVVRGAKSAIERFAGADETYTI-EA 338

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
              +   ++ G   + G  ++      F+  D K   V   S+G+ + R++ A++ +  D
Sbjct: 339 LMPNGWALQSGTSHFLGQNFARAFDVQFQNKDAKRELVWATSWGV-STRLLGALVMTHSD 397

Query: 335 GKGIIWPDSVAPFKISLINIKAHD-----QVCRDACEKIYARLSKVGCDVFWDDM-GEQI 388
             G++ P  VAP +++++ I   +     +      + + A    +G  V  D+    + 
Sbjct: 398 DAGLVLPPRVAPVQVAVVPITRKNDDAGTEAVDALVDGLVAECKALGVRVKVDERPNMRP 457

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           G++F   +  G PL+V VG +  ++  V +  RL G +  +
Sbjct: 458 GAKFFEWERKGVPLRVEVGPRDAAEGVVVVASRLGGEKRSV 498


>gi|316978849|gb|EFV61767.1| putative proline--tRNA ligase [Trichinella spiralis]
          Length = 1494

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/456 (14%), Positives = 133/456 (29%), Gaps = 108/456 (23%)

Query: 28   RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGR 85
            +  MI  +   G Y   P      + + A +  +           P       W  +SG+
Sbjct: 1001 KAEMIEYYDISGCYIIRPWAFAIWEAIQAWLDRQIKLMDVANCYFPMFV---AWVTKSGQ 1057

Query: 86   YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
             +      +R               E VM   F   I+S+R+LP    Q     R E + 
Sbjct: 1058 SEMSEPVAIRPT------------SETVMYSSFSKWIQSHRDLPLKINQWCNIVRWEFKH 1105

Query: 146  RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
                +RSREFL ++ ++     + +    + +   Y R++                    
Sbjct: 1106 PTPFLRSREFLWQEGHTAHANKDDAVKEVHDILDLYARVYE------------------- 1146

Query: 206  LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHN 264
                                         E      I    +  E++  A +  T + + 
Sbjct: 1147 -----------------------------ELLAVPVIKGRKTDKEKFAGADFTTTIEAYI 1177

Query: 265  EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                         S RGI+     + G  +S      ++  + +       +      R 
Sbjct: 1178 P-----------TSGRGIQAATSHHLGQNFSKMFDIVYEHPETQKKENVYQNSWGLTTRS 1226

Query: 325  VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ------------------------- 359
            +        D +G++ P +VA  ++    I    +                         
Sbjct: 1227 IGVFTMIHSDNQGLVLPPAVAKVQVCKKIIFLSSKMDSNVASVVVQVVIIPCGITSSLDK 1286

Query: 360  ----VCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                  +D C+ +   L         D       G +F   +L G PL++ +G + +++ 
Sbjct: 1287 SVVKNIQDTCQLLNEELRSGEIRSMCDFRDNYSPGWKFNHWELKGVPLRMELGPRDLNEK 1346

Query: 415  KVEIKHRLTGIREDMSLEEV-INYASHRFSNNRPVL 449
            +V +  R  G +  +S+     +      +N +  L
Sbjct: 1347 QVTLVRRDDGSKMTVSMIGFKADVIKQLLTNIQNSL 1382


>gi|153839391|ref|ZP_01992058.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|149747086|gb|EDM58074.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
          Length = 345

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 7   FLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
              + +   RD      +L L    + Q + G+  W   G     ++   +R++ N    
Sbjct: 234 LTRLEEAAKRDHRKIGKQLDLF--HMQQEAPGMVFWHHNGWSIFRDLEVFVRDKLNEYDY 291

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            E+  P +    LW  SG +D Y   M       ++     P +    
Sbjct: 292 QEVKGPLMMDRVLWERSGHWDKYADAMFT-TSSENREYAIKPMNCPGH 338


>gi|154686897|ref|YP_001422058.1| histidyl-tRNA synthetase [Bacillus amyloliquefaciens FZB42]
 gi|166227943|sp|A7Z751|SYH_BACA2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|154352748|gb|ABS74827.1| HisS [Bacillus amyloliquefaciens FZB42]
          Length = 424

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/404 (15%), Positives = 114/404 (28%), Gaps = 18/404 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I+RE        E+  P  +  +L+        D   KEM    DR  +++   
Sbjct: 20  WQFVEQIMRETCRTYQYKEIRTPIFEHTELFARGVGESTDIVQKEMYTFEDRKGRSLTLR 79

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P            + + +    P   Y +   FR E        +  +F ++        
Sbjct: 80  PEGTAAAVRAFNENKLFANPVQPTKLYYVGPMFRYERPQTGRFRQFYQFGIEA--IGSKD 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA---DTGETQVFC 223
           P             Y +   +     +    +          E +V       GE    C
Sbjct: 138 PAVDAEVIALAMSIYRKAGLKHVKLVLNSLGDQDS--RKSYREALVKHFEPRIGEFCSDC 195

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--------NK 275
                  P+   +   D    L              S  + EK+   L +          
Sbjct: 196 QSRLHTNPLRILDCKKDREHELMKTAPSILDYLNEESAAYFEKVKQYLNDLGIPFEIDPN 255

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V          F   +      + T     G+   +     G  A  +  A+       
Sbjct: 256 LVRGLDYYNHTAFEIMSNAEGFGAITTLAGGGRYDGLVEQIGGPEAPGIGFAMSIERLLA 315

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   +     I    +  +D    +  +L + G     D   +++  QF  A
Sbjct: 316 AIDAEKTELPVNQGIDCYIVTLGEKAKDYSVSLVYKLREAGISSEIDYENKKMKGQFKTA 375

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           D LG     I+G   ++ +K+ +K   TG + ++ L+E+I    
Sbjct: 376 DRLGARFIAILGEDELAQNKINVKDAETGEQREVVLDELIQVLK 419


>gi|118468169|ref|YP_888757.1| glycyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
 gi|118169456|gb|ABK70352.1| glycyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
          Length = 461

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/435 (14%), Positives = 137/435 (31%), Gaps = 38/435 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+     +     R   + +    +    +WV SG  + +     E L
Sbjct: 32  WDYGPLGVELKENIKRQWWKSVVTGRDDVVGLDSAIILPRQVWVASGHVEVFNDPLVECL 91

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP--------- 145
               R+ +  +     E+   D   S   S  + P    + Q     +            
Sbjct: 92  SCHKRHRQDHMQEAYAEKKGIDDPDSVPMSEISCPDCGTKGQWTEPRDFNMMLKTYLGPI 151

Query: 146 --RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G+   R    +  +        +        +  +    R  +        +    
Sbjct: 152 ESEDGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQIGKSFRNEITPGNFIFRTREFE 211

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                 F+  +   E   +     + + +     D D++       E+ +     T D+ 
Sbjct: 212 QMEMEFFVEPSTAAEWHQYWIDTRLQWYV-DLGIDRDNLRLYEHPKEKLSHYSDRTVDIE 270

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F   P  +     G+     F   T  K+S    + +  A    +   +     G 
Sbjct: 271 YKFGFQGNPWGELE---GVANRTNFDLSTHAKHSGVDLSFYDQAADTRYVPYVIEPAAGL 327

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       +AP K +++ +  H          +
Sbjct: 328 TRSLMAFLVDAYTEDEAPNAKGGVDKRTVLKLDPRLAPVKAAVLPLSRH-ADLSPKARDL 386

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A L +   +V +DD G  IG ++   D +G P  V V    + D+ V I+ R    +E 
Sbjct: 387 AAELRRNW-NVEFDDAGA-IGRRYRRQDEIGTPYCVTVDFDSLEDNAVTIRERDAMTQER 444

Query: 429 MSLEEVINYASHRFS 443
           +++++V +Y + R  
Sbjct: 445 IAIDKVSDYLAVRLK 459


>gi|29832178|ref|NP_826812.1| glycyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
 gi|59798584|sp|Q82BR9|SYG_STRAW RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|29609296|dbj|BAC73347.1| putative glycyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
          Length = 460

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/433 (13%), Positives = 126/433 (29%), Gaps = 38/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    + + ++WV SG   ++   +    
Sbjct: 33  WDYGPLGVELKENIKRQWWRYMVTSREDVVGIDSSVILATEVWVASGHVATFSDPLTECT 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + +        E    +   +                 K +  E +   G++ +    
Sbjct: 93  SCHKR-YRADHLEEA--YEAKHNRSPENGLADINCPNCGNKGQFTEPKQFSGLLSTHLGP 149

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------LGLKSIPMRAESGPIGG---- 204
            +D+ S       +       F    +   R        +G            I      
Sbjct: 150 TQDSGSVAYLRPETAQGIFTNFAQVQQTSRRKPPFGIAQMGKSFRNEITPGNFIFRTREF 209

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V     E                     +++   +   E+ +     T+D+ 
Sbjct: 210 EQMEMEFFVKPGEDEKWQEFWMQERWNWYTGLGLREENMRWYDHPAEKLSHYSKRTADIE 269

Query: 264 NEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               F      E + V+ R            K S    + F    G+     +     G 
Sbjct: 270 YRFQFGGNEWGELEGVANRTDYDLSAH---AKASGQDLSYFDQEAGERWTPYVIEPAAGV 326

Query: 322 MRVVAAVI--ESSHDGKGIIWPDSVAPFKISLIN----------IKAHDQVCRDACEKIY 369
            R + A +      D              + L              + +       + + 
Sbjct: 327 GRAMLAFLLDAYVEDEAPNAKGKMEKRTVLRLDPRLSPVKVAVLPLSRNPELSPKAKGLA 386

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R +  +E +
Sbjct: 387 TALRQHW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRERDSMKQERV 444

Query: 430 SLEEVINYASHRF 442
           SL+++  Y + R 
Sbjct: 445 SLDQIEGYLAARL 457


>gi|260438844|ref|ZP_05792660.1| glycine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
 gi|292808683|gb|EFF67888.1| glycine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
          Length = 462

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/442 (15%), Positives = 144/442 (32%), Gaps = 52/442 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKKAWWQKFI----QESPYNVGVDCAILMNPQTWVASGHLGGFADPL 87

Query: 94  LRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-------E 142
           +      ++     +I     +   T        S  ++     + ++           E
Sbjct: 88  MDCKACKERFRADKLIEDWAADNNFTLESAVDAWSNEDMENFIKEKEIACPSCGKKDFTE 147

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP- 201
           +R    + ++ + + +DA +       +       F +  R   +     I    +S   
Sbjct: 148 IRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRN 207

Query: 202 ------------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                           +  EF     T        + F    + +     +++ + +   
Sbjct: 208 EITPGNFTFRTREFEQMELEFFCKPGTDLEWFRYWRGFCINWLKTLGIKDEEMRARDHSP 267

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E+    Y+  +            E   ++ R              S    + F   D   
Sbjct: 268 EEL-CFYSKGTTDIEFLFPFGWGELWGIADRTDYDLTQHQ---NTSGQDMSYFDDEDNSK 323

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQV 360
           +   +    +GA RV  A + S++D + +          +  ++AP KI ++ +      
Sbjct: 324 YIPYVVEPSLGADRVTLAFLCSAYDEEELEGGDVRTVLHFHPALAPVKIGVLPLSKK--- 380

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  EKIYA LSK   +  +DD G  IG ++   D +G P  V       +D  V ++ 
Sbjct: 381 LNEGAEKIYADLSKK-YNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFDSETDGCVTVRD 438

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R T  +E + +E++  Y   +F
Sbjct: 439 RDTMAQERIKIEDLNKYFEDKF 460


>gi|220929210|ref|YP_002506119.1| glycyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|254781875|sp|B8I2Z6|SYG_CLOCE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|219999538|gb|ACL76139.1| glycyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 462

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 137/443 (30%), Gaps = 54/443 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + + PLG +  +NV      +       E      +    L +  +WV SG    +   +
Sbjct: 34  WDYGPLGVELKNNVKKAWWLKFI----QESPYNVGVDCAILMNPQVWVASGHVGGFSDPL 89

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           +   D   +        +    +     +   +N     Y      R            R
Sbjct: 90  IDCKDCKTRHRADKLIEDWNNENNIEFRVDGLKNEELMQYIKDKGVRCPSCGSANFTDIR 149

Query: 154 EFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP--- 201
           +F +       +T +     Y +          F +  R   R     I    +S     
Sbjct: 150 KFNLMFKTFQGVTEDSKSEIYLRPETAQGIFVNFKNVQRTTRRKIPFGIGQIGKSFRNEI 209

Query: 202 ----------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                         +  EF              KDF    + S N   +++   +   E+
Sbjct: 210 TPGNFTFRTREFEQMELEFFCEPGKDLEWFKYWKDFCYNWLLSLNMKKENLKLRDHEKEE 269

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKD 309
            +    AT+D+         P        GI     F       +S    + F     + 
Sbjct: 270 LSHYSNATTDI-----EFLFPFGWGELW-GIADRTDFDLKQHMTHSKDDLSYFDPTTNEK 323

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQV 360
           +        +GA RV  A +  ++D + +          +  ++AP KI+++ +      
Sbjct: 324 YVPYCIEPSLGADRVTLAFLCEAYDEEEVAEGDVRTVLRFHPALAPVKIAVLPLSKK--- 380

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +  +K+Y  L        +D+ G  IG ++   D +G P  +      + D  V I+ 
Sbjct: 381 LGEDADKVYQML-AKSYYCEYDETG-SIGKRYRRQDEIGTPYCITFDFDSLEDKSVTIRD 438

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +  + +E++  Y  ++F 
Sbjct: 439 RDTMQQVRIKIEDLAAYFENKFE 461


>gi|289550604|ref|YP_003471508.1| Histidyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|289180136|gb|ADC87381.1| Histidyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
          Length = 419

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/413 (14%), Positives = 116/413 (28%), Gaps = 21/413 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        +   + +        E+  P  +S DL+        D   KEM    D+ 
Sbjct: 12  LPEETAKWRYIENKLAQLMKLYNYQEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKG 71

Query: 101 DKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +      + ++   N P   Y     FR E + +    R R+F    
Sbjct: 72  NRSITLRPEGTAAVVRSYIENKMQGLPNQPVKLYYNGPMFRYERKQKG---RYRQFTQFG 128

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                   P         +   Y     +     I    +         +E +V      
Sbjct: 129 VEAIGAEDPSIDAEVLAMVMQIYQSFGLKHLKLVINSIGD--AESRKEYNEALVKHFEPV 186

Query: 219 TQVFCSKDFMDFPIPSENTDFDDI-----------ISLNSIVEQWTAPYAATSDVHNEKL 267
              FCS                 +              + + ++  A Y A     ++  
Sbjct: 187 IDDFCSDCQSRLHTNPMRILDCKVDRDKKAIKTAPKITDYLNDESKAYYEAVKQYLDDLN 246

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVA 326
              + ++  V          F           A T     G+ + +     G     +  
Sbjct: 247 IPYVEDSNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLQLLDGPNQTGIGF 306

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A+               +   +   + I    +       K+     K G     D +  
Sbjct: 307 ALSIERLLLALEEENIDIVENETLDLFIVTMGEAANHFAVKLLNDCRKNGISADKDYLNR 366

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +I  Q   AD L     +++G + + +  VE+KH  +G  E +  E +++Y  
Sbjct: 367 KIKGQMKQADRLNATYTIVIGDQELDNQIVEVKHMESGNSETVKFENLLSYFK 419


>gi|269794690|ref|YP_003314145.1| glycyl-tRNA synthetase [Sanguibacter keddieii DSM 10542]
 gi|269096875|gb|ACZ21311.1| glycyl-tRNA synthetase [Sanguibacter keddieii DSM 10542]
          Length = 462

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/452 (13%), Positives = 129/452 (28%), Gaps = 46/452 (10%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G + Q      G    + + PLG +  +N+          +R   + +    +    +
Sbjct: 17  RRGFVFQSGEIYGGSRSAWDYGPLGVELKENIKRQWWRTMVTSRDDVVGLDSAVILPRKI 76

Query: 80  WVESGRYDSYGK---EMLRLADRNDKAMIYGPTHE-----------EVMTDIFRSHIKSY 125
           W  SG    +     E L    R  +  +     E           ++      +  +  
Sbjct: 77  WEASGHVGVFTDPLTECLSCHKRFREDQMLEEFEEKKGRVPENGLADIACPNCGTRGQWT 136

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
               F           E     G+   R    +  +       G+        +  +   
Sbjct: 137 EPRDFNMMLKTYLGPVED--ESGLHYLRPETAQGIFVNFANVVGASRKKPPFGIGQIGKS 194

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
            R  +        +          F+      E   +       + +       D++   
Sbjct: 195 FRNEITPGNFIFRTREFEQMEMEFFVEPGTDAEWHQYWIDLRTAWYV-DLGISRDNLRLF 253

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFK 303
               E+ +     T D+     F      +     GI     F   T   +S    + F 
Sbjct: 254 EHPQEKLSHYSTRTVDIEYRFGFTGSEWGELE---GIANRTDFDLKTHSEHSGKDLSYFD 310

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKIS 350
               +     +     G  R + A +  ++                       ++P K +
Sbjct: 311 QGKNERWVPYVIEPAAGLTRSLMAFLAEAYTEDEAPNAKGGVDTRTVLKLDPRLSPVKAA 370

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ + + ++        +   L K   +V +DD G  IG ++   D +G P  + V    
Sbjct: 371 VLPL-SRNEQLSPKARDLATELRKHW-NVDFDDAGA-IGRRYRRQDEIGTPFCITVDFDT 427

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + D  V I+HR    +E ++L++V  Y   R 
Sbjct: 428 LDDQAVTIRHRDDMSQERVALDQVTAYLGARL 459


>gi|212697112|ref|ZP_03305240.1| hypothetical protein ANHYDRO_01678 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675887|gb|EEB35494.1| hypothetical protein ANHYDRO_01678 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 134

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/132 (37%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           MGSYGIG  R ++A+IE ++D  GIIWP  VAPF+  +  +  + +  +   EKIY  L 
Sbjct: 1   MGSYGIGITRSISAIIEQNYDDNGIIWPTKVAPFEAWITLVNKNKEDQKQLAEKIYESLL 60

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G +V  DD  E+ G +F   DL+G P ++ VG K  SD  VE   R       MS +E
Sbjct: 61  DQGIEVMLDDRKERAGVKFNDRDLVGCPYRITVG-KDASDDIVEFSKRSDMENLKMSSDE 119

Query: 434 VINYASHRFSNN 445
            I         +
Sbjct: 120 AIEKIVKSIKED 131


>gi|302551280|ref|ZP_07303622.1| glycyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302468898|gb|EFL31991.1| glycyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 460

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/443 (12%), Positives = 118/443 (26%), Gaps = 58/443 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    + + ++WV SG   ++   +    
Sbjct: 33  WDYGPLGVELKENLKRQWWRYMVTSREDVVGIDSSVILAPEVWVASGHVATFTDPLTECT 92

Query: 98  DRND----------KAMIYGPTHEEV----MTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
             +                G   E            +         F+          + 
Sbjct: 93  SCHKRFRADHLEEAYEEKKGHAPENGLADLNCPNCGNKGTFTEPKQFSGLLSTHLGPTQD 152

Query: 144 RPRFGVMR-------SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
                 +R          F      S    P G                           
Sbjct: 153 SGSIAYLRPETAQGIFTNFSQVQTTSRRKPPFGIAQMGKSFRNEITPGN----FIFRTRE 208

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
            E   +      EF V     E       +             +++       E+ +   
Sbjct: 209 FEQMEM------EFFVKPGEDEKWQEYWMEQRWNWYTGLGLREENMRWYEHPKEKLSHYS 262

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQM 314
             T+D+     F      +     G+     +  G  +K S    + F    G+     +
Sbjct: 263 KRTADIEYRFQFGGSEWGELE---GVANRTDYDLGAHSKASGQDLSYFDQEAGERWTPYV 319

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK---------------AHDQ 359
                G  R + A +    D        +          ++               + + 
Sbjct: 320 IEPAAGVGRSLLAFLL---DAYVEDEAPNAKGKMEKRTVLRLDHRLAPVKVAVLPLSRNP 376

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 + +   L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++
Sbjct: 377 ELSPKAKGLAQALRQNW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAVTVR 434

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            R T  +E +SL+++  Y + R 
Sbjct: 435 ERDTMKQERISLDQIEGYLAARL 457


>gi|268608254|ref|ZP_06141981.1| glycyl-tRNA synthetase [Ruminococcus flavefaciens FD-1]
          Length = 468

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/446 (13%), Positives = 132/446 (29%), Gaps = 56/446 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +   N+     ++  +     +      L +   WV SG    +   ++   
Sbjct: 36  WDYGPLGVELKKNIKNAWMKKFVQENKYNVGLDSAILMNPQTWVASGHIGGFSDPLMDCK 95

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +   +        +   T++       + N     Y  +         +      R+F +
Sbjct: 96  ECKTRHRADNLIEDFDGTNVAG-----WSNEQMMDYIKEKNIVCPNCGKQNFTDIRQFNL 150

Query: 158 KDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRAESG 200
                  +T +     Y                             ++G           
Sbjct: 151 MFKTFQGVTEDSKSELYLRPETAQGIFVNFANIQRTTRKKVPFGVAQVGKSFRNEITPGN 210

Query: 201 PIGGDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            I      E     F     T        + +    + S     ++I   +   E+    
Sbjct: 211 FIFRVREFEQMELEFFCKPGTDLEWFDYWRSYCKNFLLSLGLKEENIRLRDHDKEEL-CF 269

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y+  +            E   V+ R              S      F     + +   + 
Sbjct: 270 YSKATTDFEYLFPFGWGELWGVADRTDYDLTQH---INTSGKSLEYFDPETNEKYIPYVI 326

Query: 316 SYGIGAMRVVAAVIESSHDGKG-----------------IIWPDSVAPFKISLINIKAHD 358
              +G  R+  +V+  ++D +                  + +  ++APFK +++ +    
Sbjct: 327 EPSLGVERLFLSVVTEAYDEEELVSTDKNGNEKKEIRTVMHFHPALAPFKCAVLPLVKK- 385

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS-DSKVE 417
                  E++Y  LSK    V +D+ G  IG ++   D +G P  + V    +  D+ V 
Sbjct: 386 --LTPKAEEVYEMLSKK-FMVDFDEAG-TIGKRYRRQDEIGTPFCITVDFDTIEKDNCVT 441

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ R T  +  +SL+E+  +   + +
Sbjct: 442 VRDRDTMEQVRVSLDELEEFIEAKIA 467


>gi|170760063|ref|YP_001788858.1| glycyl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407052|gb|ACA55463.1| glycine--tRNA ligase [Clostridium botulinum A3 str. Loch Maree]
          Length = 463

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 147/445 (33%), Gaps = 57/445 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + + PLG +  +NV     ++       E      +    L ++ +WV SG    +   +
Sbjct: 34  WDYGPLGVELKNNVKKAWWKKF----VQESPYNVGIDAAILMNSQVWVASGHVGGFSDPL 89

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS--YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +   +            EE MT+       +  + N     Y                  
Sbjct: 90  MDCKEC-KARFRADKLVEEHMTEQGVEKASADGWSNEKLKQYIDDNGIECPKCKAKNFTD 148

Query: 152 SREFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            R+F +       +T +     Y        +FV++  +      K     A+ G    +
Sbjct: 149 IRKFNLMFKTFQGVTEDAKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRN 208

Query: 206 LSH----------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                              EF     T        KD+    + +   + ++I   +   
Sbjct: 209 EITPGNFTFRTREFEQMELEFFCKPGTDLEWFNYWKDYCWNFLINLGINKENIRFRDHSQ 268

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGADGK 308
           E+ +    ATSD+     F    E   V+ R       F              +     K
Sbjct: 269 EELSHYSNATSDIEFLFPF-GWGELWGVADR-----TDFDLKKHMEHSGEDLNYLDPTTK 322

Query: 309 DHY-VQMGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHD 358
           + Y        +GA RVV A +  ++D            +    ++APFK +++ +    
Sbjct: 323 ERYVPYCIEPSLGADRVVLAFLVDAYDEEELEGGDVRNVLHLHPALAPFKAAVLPLSKK- 381

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  +++Y+ LSK   ++ +D+ G  IG ++   D +G P  + V    + D+ V I
Sbjct: 382 --LSDKSQEVYSMLSKK-FNIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTI 437

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +  +S+ E+  +   +  
Sbjct: 438 RDRDTMNQIRVSINELEKFIEDKLE 462


>gi|254382919|ref|ZP_04998275.1| glycyl-tRNA synthetase [Streptomyces sp. Mg1]
 gi|194341820|gb|EDX22786.1| glycyl-tRNA synthetase [Streptomyces sp. Mg1]
          Length = 460

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/440 (14%), Positives = 123/440 (27%), Gaps = 52/440 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +     R   + +    + + ++W  SG   ++   +    
Sbjct: 33  WDYGPLGVELKENIKRQWWKAMVTGREDIVGLDSSVILAPEVWQASGHVATFSDPLTECT 92

Query: 98  --------DRNDKAMIYGPT-------------HEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
                   D  ++A                   +  V          S            
Sbjct: 93  SCHKRHRADHLEEAYEAKHGRLPANGLADINCPNCGVKGQFTEPKQFSGMLETHLGPTQD 152

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              +  LRP         F      S    P G                           
Sbjct: 153 TGSKAYLRPETAQGIFTNFAQVQTTSRKKPPFGIAQMGKSFRNEITPGN----FIFRTRE 208

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
            E   +      EF V     E                     ++I       E+ +   
Sbjct: 209 FEQMEM------EFFVKPGEDEQWQEYWMAERWNWYRGLGIREENIRWYEHPKEKLSHYS 262

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS-LPMSATFKG-ADGKDHYVQM 314
             T+D+     F     N+     G+     F      +      T+     G+ +   +
Sbjct: 263 KRTADIEYRFNF---GGNEFSELEGVANRTDFDLKAHSAASGQDLTYFDQEAGERYTPYV 319

Query: 315 GSYGIGAMRVVAAVIESSHDGKGI------IWPDSVAPFKISLINIK------AHDQVCR 362
                G  R + A +  +++          +   +V      L  IK      + +    
Sbjct: 320 IEPAAGVNRAMLAFMLDAYNEDEAPNAKGVMEKRTVMRLDPRLAPIKVAVLPLSRNPQLS 379

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              + + A L K   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R 
Sbjct: 380 PKAKGLAADLRKNW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRERD 437

Query: 423 TGIREDMSLEEVINYASHRF 442
           T  +E +SL+++ +Y   R 
Sbjct: 438 TMKQERVSLDQIQSYLGSRL 457


>gi|124027839|ref|YP_001013159.1| threonyl-tRNA synthetase [Hyperthermus butylicus DSM 5456]
 gi|166223348|sp|A2BLF3|SYT_HYPBU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123978533|gb|ABM80814.1| Threonyl-tRNA synthetase [Hyperthermus butylicus DSM 5456]
          Length = 625

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 111/348 (31%), Gaps = 41/348 (11%)

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG-VMRSREFLMKDAY 161
            ++           + + ++ SYR+LP   ++I   +R E         R R F M D +
Sbjct: 283 HLVMRYAACHQQFSMLKDYVLSYRDLPLGMFEIADSYRLEQSGEVTLCFRLRRFYMPDLH 342

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
               + E +     ++     R   +LG     +         +++ +F         ++
Sbjct: 343 ILARSVEEAVKIAEELQKIIHREAEKLGQTYYAVY--------NVTEDFWEEKRNLLLEL 394

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                      P+  T +     +   V           + H   + DS    + ++   
Sbjct: 395 VRRDGK-----PALITVYP--AGIYYWV--------VNVEYH---IVDSAGRPREIA--- 433

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG------AMRVVAAVIESSHDG 335
                 F F    +      +   + K+HY  +    +          V  A ++    G
Sbjct: 434 -----TFQFDVGNAKRFGIRYVDENNKEHYPVIIHTALIGSIERYIYMVFDAAVKMERRG 488

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           +    P  +AP ++ LI +    +      EK+ + L +    V  DD    +G +   A
Sbjct: 489 QTPYIPTWLAPIQVRLIPVNPSSEQQLSHAEKVASLLERHLIRVDIDDRQLSLGRRIRDA 548

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                P   ++G + V    V +  R T  R  +  EE++        
Sbjct: 549 AREWIPYIAVIGDREVETGTVNVTIRRTNDRVAVKPEELLEMVLKDLE 596


>gi|254508889|ref|ZP_05120998.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus 16]
 gi|219548203|gb|EED25219.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus 16]
          Length = 129

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 7/124 (5%)

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R +  +IE              A                 D  +++  +L KVG     D
Sbjct: 8   RFIGILIEEYFGFFPTWLSPEQAVIMNIT-------DKQADYAQEVAQKLQKVGIRAKAD 60

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              E+IG +     L   P  ++ G + +   ++ ++ R         +++ I+Y     
Sbjct: 61  LRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGKDLGKFKVDDFISYIQDEI 120

Query: 443 SNNR 446
           S  +
Sbjct: 121 STRK 124


>gi|319935432|ref|ZP_08009869.1| glycyl-tRNA synthetase [Coprobacillus sp. 29_1]
 gi|319809648|gb|EFW06061.1| glycyl-tRNA synthetase [Coprobacillus sp. 29_1]
          Length = 458

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/433 (13%), Positives = 138/433 (31%), Gaps = 37/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+  +  +   +     +        +  +W  SG    +     +  
Sbjct: 33  WDYGPLGVEMKNNIKKLWWKRFIQESPYNVGLDSAIFMNPRVWEASGHVGGFSDPLIDCK 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD--ELRPRFGVMRS 152
               R+    +      +V +D +                      D  ++R    + ++
Sbjct: 93  NCKTRHRADKLIEGYDPDVHSDGWEPEKMMEYIRDHHIKCPDCGSEDFTDIREFELMFKT 152

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG 204
              ++KDA +       +       F +  R   +         G            I  
Sbjct: 153 YMGVVKDAKNVVYLRPETAQGIFVNFKNIQRTSRKKVPFGIGQIGKSFRNEITPGNFIFR 212

Query: 205 DLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
               E     F    DT        KD     +       +++   +   E+ +    AT
Sbjct: 213 TREFEQMELEFFCKPDTDLDWFHYWKDGCMQFLKDLGLTSENLRFRDHEQEELSFYSKAT 272

Query: 260 SDV-HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           SD+ +         E   V+ R            ++S            + +   +    
Sbjct: 273 SDIEYLYPAPLGWGELWGVADRTDYDLSRHQ---EFSKKNLEYLDPETNQKYIPYVIEPS 329

Query: 319 IGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +GA R+  +V   ++D +         +    +VAP K +++ +        D   ++Y+
Sbjct: 330 VGADRLFLSVFADAYDEEQLENDTRIVMHLHPAVAPIKAAILPLTKK---QSDKAMEVYS 386

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L     +V +D  G+ IG ++   D +G P  + V     +D  V ++ R +  +  + 
Sbjct: 387 ML-AQDFNVEFDVAGQ-IGKRYRRQDAIGTPFCITVDFDSETDQTVTLRDRDSMEQIRLP 444

Query: 431 LEEVINYASHRFS 443
           ++E+ +Y + +  
Sbjct: 445 IDELKSYIAEKIK 457


>gi|332670830|ref|YP_004453838.1| glycyl-tRNA synthetase [Cellulomonas fimi ATCC 484]
 gi|332339868|gb|AEE46451.1| glycyl-tRNA synthetase [Cellulomonas fimi ATCC 484]
          Length = 461

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/434 (14%), Positives = 127/434 (29%), Gaps = 40/434 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    +    +WV SG    +   +    
Sbjct: 34  WDYGPLGVELKENIKRQWWRAMVTSRDDIVGLDSSVILPRQVWVASGHVGVFTDPLTECL 93

Query: 98  DRN----------DKAMIYGPTHEEV----MTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
             +          +     G   E            +  +      F           E 
Sbjct: 94  SCHKRFREDQLVEEFEERKGHAPEGGLAGVNCPNCGTKGQWTEPRDFNMMLKTYLGPVED 153

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G+   R    +  +        +        +  +    R  +        +    
Sbjct: 154 --ESGLHYLRPETAQGIFVNFKNVYTAARMRPPFGIGQIGKSFRNEITPGNFIFRTREFE 211

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                EF V   T ET      D           D D++       E+ +     T D+ 
Sbjct: 212 QMEM-EFFVEPGTDETWHQYWIDTRTDWYVDLGLDRDNLRLYEHPAEKLSHYSKRTVDIE 270

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGIGA 321
               F      +     GI     F  GT   +S    + F  A  + +   +     G 
Sbjct: 271 YRFGFQGSEWGELE---GIANRTDFDLGTHSEHSGQDLSFFDQAKNERYVPYVIEPAAGL 327

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       +AP K +++ + + ++        +
Sbjct: 328 TRSLMAFLVEAYAEDEAPNTKGGVDKRVVLKLDPRLAPVKAAVLPL-SRNEQLSPKARDL 386

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A L +   +V +DD G  IG ++   D +G P  + V    + D  V I+HR    +E 
Sbjct: 387 AAELRRSW-NVEFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLEDQAVTIRHRDDMSQER 444

Query: 429 MSLEEVINYASHRF 442
           ++L++V  Y +   
Sbjct: 445 VALDKVTGYLAQHL 458


>gi|300788441|ref|YP_003768732.1| glycyl-tRNA synthetase [Amycolatopsis mediterranei U32]
 gi|299797955|gb|ADJ48330.1| glycyl-tRNA synthetase [Amycolatopsis mediterranei U32]
          Length = 462

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/433 (14%), Positives = 137/433 (31%), Gaps = 36/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  DN+     +   Q R   + +    +   ++WV SG  + +   ++   
Sbjct: 33  WDYGPLGVELKDNIKRQWWKTVVQGRDDVVGLDSSVILPREVWVASGHVNVFTDPLIECL 92

Query: 98  DRNDKAMIYGPTHEEVM-------------TDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             + +        E                        +     P  F  +   +   + 
Sbjct: 93  SCHKRFRADQLAEEFAARTGKETSEDDLSEVPCPNCGTRGKYTPPRDFNMMLKTYLGPVE 152

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              G+   R    +  +      + +        +  +    R  +        +     
Sbjct: 153 SEEGLAYLRPETAQGIFVNFSNVQTTSRKKPPFGIGQIGKSFRNEITPGNFIFRTREFEQ 212

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               EF V     E       D             D++       E+ +     T D+  
Sbjct: 213 MEM-EFFVEPGEDERWHQYWIDERTKWYTDLGIKADNLRHYEHPKEKLSHYAKRTVDIEY 271

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F++    +     GI     F   T   +S    + F  A G+ +   +     G  
Sbjct: 272 RFAFNA--GQEWGELEGIANRTDFDLTTHSNHSGQDLSFFDQASGQRYRPFVIEPAAGVG 329

Query: 323 RVVAAVIESSH-------------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           R + A +  S+                 +     ++PFK++++ + + +       +++ 
Sbjct: 330 RSMMAFLVDSYVEEEVPNAKGGTDTRVVLRLDPRLSPFKVAVLPL-SRNADLTPKAKEVA 388

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A L K   +V +DD    IG ++   D +G P  V V    + D  V ++ R +  +E +
Sbjct: 389 ATLRKHW-NVDFDDAQA-IGRRYRRQDEIGTPYCVTVDFDSLEDQAVTVRERDSMSQERI 446

Query: 430 SLEEVINYASHRF 442
           +++++ +Y + R 
Sbjct: 447 AIDKLESYLAGRL 459


>gi|225377160|ref|ZP_03754381.1| hypothetical protein ROSEINA2194_02806 [Roseburia inulinivorans DSM
           16841]
 gi|225211065|gb|EEG93419.1| hypothetical protein ROSEINA2194_02806 [Roseburia inulinivorans DSM
           16841]
          Length = 465

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/442 (13%), Positives = 136/442 (30%), Gaps = 47/442 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     +      L +   WV SG    +   ++   
Sbjct: 32  WDYGNLGVELKNNVKRAWWQKFIQENPYNVGVDCAILMNPQTWVASGHLGGFSDPLMDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           + +++        E+   +       S   +       +  + +       +      R+
Sbjct: 92  ECHER-FRADKIIEDFAAEKNIELKGSVDGWTQEEMRDFIEEHQIPCPTCGKHNFTDIRQ 150

Query: 155 FLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRA 197
           F +       +T +     Y                             ++G        
Sbjct: 151 FNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEIT 210

Query: 198 ESGPIGGDLSHEFIV---LADTG-ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                      E +      + G + + F                 +D + L     +  
Sbjct: 211 PGNFTFRTREFEQMELEFFCEPGTDLEWFQYWRGFCRDWLQTLGIKEDEMRLRDHSPEEL 270

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           + Y+  +            E   ++ R              S      F    G+ +   
Sbjct: 271 SFYSKGTTDIEFLFPFGWGELWGIADRTDYDLTRHQ---NVSGQDLTYFDDEKGERYIPY 327

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVC 361
           +    +GA RVV A + +++D + I             +  ++AP KI ++ +       
Sbjct: 328 VIEPSLGADRVVLAFLCAAYDEENIGTEEKPDMRTVLHFHPALAPVKIGVLPLSKK---L 384

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  EK+YA+L     +  +DD G  IG ++   D +G P  V    +  +D  V ++ R
Sbjct: 385 NEGAEKVYAQL-AKKYNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFESETDGAVTVRDR 442

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            T  +E + +E++  Y + +F 
Sbjct: 443 DTMEQERIKIEDLDAYFAKKFE 464


>gi|170754288|ref|YP_001783158.1| glycyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
 gi|169119500|gb|ACA43336.1| glycyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
          Length = 463

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 145/441 (32%), Gaps = 49/441 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +  +WV SG    +   ++   
Sbjct: 34  WDYGPLGAELKNNVKKAWWKKFVQESPYNVGLDAAILMNNQVWVASGHVGGFSDPLMDCK 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKS--YRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           +            EE MT+       +  + N     Y                   R+F
Sbjct: 94  EC-KARFRADKLVEEHMTEQGVEKASADGWSNEKLKQYIDDNGIECPKCKAKNFTDIRKF 152

Query: 156 LMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
            +       +T +     Y        +FV++  +      K     A+ G    +    
Sbjct: 153 NLMFKTFQGVTEDAKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRNEITP 212

Query: 209 ---------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                          EF     T        KD+    + +   + ++I   +   E+ +
Sbjct: 213 GNFTFRTREFEQMELEFFCKPGTDLEWFNYWKDYCWNFLINLGINKENIRFRDHSQEELS 272

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGA-DGKDHY 311
               ATSD+          E   V+ R       F              +      + + 
Sbjct: 273 HYSNATSDI-EFLFPFGWGELWGVADR-----TDFDLKKHMEHSGEDLNYLDPATKERYV 326

Query: 312 VQMGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCR 362
                  +GA RVV A +  ++D            +    ++APFK +++ +        
Sbjct: 327 PYCIEPSLGADRVVLAFLVDAYDEEELEGGDVRNVLHLHPALAPFKAAVLPLSKK---LS 383

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +++Y+ LSK   ++ +D+ G  IG ++   D +G P  + V    + D+ V I+ R 
Sbjct: 384 DKSQEVYSMLSKK-FNIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTIRDRD 441

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +  +S+ E+  +   +  
Sbjct: 442 TMNQIRVSINELEKFIEDKLE 462


>gi|282898000|ref|ZP_06305995.1| Threonyl-tRNA synthetase, class IIa [Raphidiopsis brookii D9]
 gi|281197144|gb|EFA72045.1| Threonyl-tRNA synthetase, class IIa [Raphidiopsis brookii D9]
          Length = 332

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 113/346 (32%), Gaps = 32/346 (9%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+  +  P +      I++S ++SYR LP    +    +R E     G +        D 
Sbjct: 15  DQGFVLKPMNCPFHIQIYKSELRSYRELPMRLAEFGTVYRYEQSGELGGLTRVRGFTVDD 74

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
               +TPE     +  +    L +F  L LK+   R                  D    +
Sbjct: 75  SHLFVTPEQLDGEFLNVVDLILTVFRSLQLKNFKARLS--------------FRDPTSDK 120

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                +  D    +       +   +       A Y    D       D L    ++   
Sbjct: 121 YIGGDEVWDKAEGAIRRAVQQLGMDHFEGIGEAAFYGPKLDFI---FSDVLEREWQLGTV 177

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGII 339
            ++                  +   DG       +     G++  +  ++    +     
Sbjct: 178 QVDYNLP--------ERFDLEYVAEDGSRKRPVMIHRAPFGSLERLIGILI---EEYAGD 226

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P  +AP +I L+ +    +   +  ++I  +++++G     D  G+++       +   
Sbjct: 227 FPLWLAPVQIRLLPVG---EQQIEFTKEIARKMTELGIRAQADLSGDRLAKLIRNGEKDK 283

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            P+  +VG+K V  + + I+ R +G    + +E+V+        N 
Sbjct: 284 IPVMAVVGAKEVETNSLSIRTRASGELGVIPVEKVVEKMQESIINY 329


>gi|221633039|ref|YP_002522264.1| glycyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
 gi|254782309|sp|B9L0I4|SYG_THERP RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|221156893|gb|ACM06020.1| glycyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
          Length = 468

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/454 (12%), Positives = 131/454 (28%), Gaps = 43/454 (9%)

Query: 28  RTGMI---HQHSKGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G +    +   G+   + + PLG +   N+     E   Q R   + +    L    +
Sbjct: 20  RRGFVYPGSEIYGGLANTWDFGPLGAELKRNLKNAWWEYFIQRREDMVGLDGGILLHPRV 79

Query: 80  WVESGRYDSYGK---EMLRLADRNDKAMIY---GPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           W  SG  + +     +  R   R     +         E ++    + +    NL     
Sbjct: 80  WEASGHVEEFNDPLIDCRRCKSRFRADTLIEERLHRSTEGLSLDEMTRLVQEANLACPVC 139

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
            ++                     +    +           N   V              
Sbjct: 140 GVRDWTPVRKFNLMFRTFIGPVETESTPVYLRPETAQAIFVNFKNVVQTSRVKIPFGIGQ 199

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM----DFPIPSENTDF------DDII 243
             +A    I        ++  +  E + F   +      D  +              D +
Sbjct: 200 IGKAFRNEITPGNFIFRLLEFEQMEIEYFIRPEMWEEYFDHWLNEMGQFLRWIGFKPDRL 259

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                  Q  + Y+  +            E   ++ R            +YS      F 
Sbjct: 260 RTREHGPQELSHYSRKTVDFEYFFPFGWKELCGLAYRTDYDLRRHQ---EYSGEDLTYFD 316

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI-------------IWPDSVAPFKIS 350
               + +   +    +G  R+  A++  ++D +                +   VAP+K++
Sbjct: 317 QERNERYIPHVIEPTMGVERLFLALLCDAYDEEPAVDVNGNPYTRVVLRFHPRVAPYKVA 376

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ +    ++      ++   L +    + +D+  + IG ++   D +G P  V +  + 
Sbjct: 377 VLPLLRKPELVT-VAREVAQELRQY-FRIEYDET-QSIGRRYRRQDEIGTPYCVTIDYQT 433

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + D  V I+ R T  +  + +  ++     R  +
Sbjct: 434 LEDRTVTIRDRDTMQQVRVPISGLVEEIEARLRS 467


>gi|296133427|ref|YP_003640674.1| histidyl-tRNA synthetase [Thermincola sp. JR]
 gi|296032005|gb|ADG82773.1| histidyl-tRNA synthetase [Thermincola potens JR]
          Length = 419

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 121/403 (30%), Gaps = 17/403 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  II+E     G  E+  P  +  +L++       D   KEM    D+  +++   
Sbjct: 20  WHFLEKIIKEICREYGYAEIRTPIFEHTELFLRGVGDTTDVVEKEMYTFQDKGKRSLTLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLT 166
           P         F  H    + LP   Y     FR          R R+F       F    
Sbjct: 80  PEMTASAVRAFVEHKLYAQPLPIKVYYEGPMFRY---ANVQAGRYRQFHQFGVEVFGSDD 136

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P       +     Y R+  R     I       P+      E +     G+    C+  
Sbjct: 137 PVVDAEVISMAMDFYNRLGLRDLELHINSVGC--PVCRPKHREELRKFLAGKLDRLCALC 194

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF------DSLPENKRVSAR 280
              +             +   + E      +   D   E         D++     +  R
Sbjct: 195 RSRYDRNPMRILDCKEEACRLVSEGAPTTLSCLCDDCREHFEKVKNYLDAIGIEYIIDDR 254

Query: 281 ---GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
              G++      F    +   + +  G  G+ + +     G     +  A+         
Sbjct: 255 LVRGLDYYTKTAFEIMAADIGAQSSIGGGGRYNGLIEQVGGPPTPGIGFALGLERILATM 314

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                 +       I +    +  +    +I   L + G     D++   + +Q   A+ 
Sbjct: 315 ERQGIEIPVENRCDIYLAPLGEEAKLKSFRILDILRRSGLAAEIDNLNRSLKAQMKFANR 374

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           L     VI+G   ++     +++   G +E+++L+E+INY   
Sbjct: 375 LKAKYVVILGENELNRGIAAVRNMADGQQEEIALDELINYLKK 417


>gi|239828654|ref|YP_002951278.1| glycyl-tRNA synthetase [Geobacillus sp. WCH70]
 gi|239808947|gb|ACS26012.1| glycyl-tRNA synthetase [Geobacillus sp. WCH70]
          Length = 460

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/440 (14%), Positives = 142/440 (32%), Gaps = 48/440 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     + +    L +   W  SG   ++   M+   
Sbjct: 32  WDYGPLGTELKNNIKRAWWKKFVQESPYNVGLDAAILMNPKTWEASGHLGNFNDPMIDCK 91

Query: 98  D---RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R+    +     EE   ++      S+  +     +  +   +           R+
Sbjct: 92  QCKARHRADKLIENALEEKGIEMVVDG-LSFEKMEELIKEHNIACPE--CGSHDFTNIRQ 148

Query: 155 FLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           F +       +T   +   Y        +FV++  +   +  K     A+ G    +   
Sbjct: 149 FNLMFKTYQGVTESSANEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIAQIGKSFRNEIT 208

Query: 209 ----------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                           EF              K F    + S     ++I   +   E+ 
Sbjct: 209 PGNFTFRTREFEQMELEFFCKPGEELEWFDYWKQFCKQWLLSLGMKPENIRLRDHTKEEL 268

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           +    AT+D+   K      E   +++R            +YS            + +  
Sbjct: 269 SHYSNATTDI-EYKFPFGWGELWGIASRTDYDLKQH---MEYSGEDFRYIDQETNERYIP 324

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRD 363
                 +GA RV  A +  ++D +          +    ++AP+K ++  +        +
Sbjct: 325 YCIEPSLGADRVTLAFMIDAYDEEELEDGTTRTVMRLHPALAPYKAAVFPLSKK---LAE 381

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               I+A LSK    V +D+ G  IG ++   D +G P  +        D KV ++ R T
Sbjct: 382 GARNIFADLSKH-FMVDYDESG-SIGKRYRRQDEIGTPFCITYDFDSEQDGKVTVRDRDT 439

Query: 424 GIREDMSLEEVINYASHRFS 443
             +  + + E+ ++   +  
Sbjct: 440 MEQVRIPISELKSFLEEKIQ 459


>gi|295399338|ref|ZP_06809320.1| histidyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978804|gb|EFG54400.1| histidyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 423

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/406 (15%), Positives = 126/406 (31%), Gaps = 14/406 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I R+   R    E+  P  +  +L++       D   KEM    DR  +++   
Sbjct: 20  WQYVEKIARDICRRYNYREIRTPIFEHTELFLRGVGDTTDIVQKEMYTFEDRGGRSITLR 79

Query: 108 PTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   F  + +    N P   Y I   FR E        +  +F ++   S    
Sbjct: 80  PEGTAPVVRSFVENKMYGDPNQPIKLYYIGPMFRYERPQAGRFRQFVQFGVEALGS--DD 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIP-------MRAESGPIGGDLSHEFIVLADTGET 219
           P             Y  +  +     I         +A    +     +      +  + 
Sbjct: 138 PAIDAEVIAMAMELYQSLGLKKVRLVINSLGDIESRKAHRQALIDHFQNRIHEFCEDCQV 197

Query: 220 QVFCSK-DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRV 277
           ++  +    +D     ++       S+   + + ++ Y      + EKL      + + V
Sbjct: 198 RLKKNPLRILDCKKDRDHELMATAPSILDYLNEESSRYFEKVKAYLEKLGIPFEVDARLV 257

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                     F   +      + T     G+ + +     G  A  +  A+         
Sbjct: 258 RGLDYYNHTTFEIMSDAEGFGAITTLCGGGRYNGLVQEIGGPEAPGIGFALSIERLLAAL 317

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                ++   +     + A  +  ++   ++   L K G     D    +I +Q   AD 
Sbjct: 318 DAEGVALPVQRGIDCYVVAIGEKAKEESVQLVHELRKAGIAADKDYQDRKIKAQLKAADR 377

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           L      I+G   ++   + IK   TG + ++ L  V++Y   R S
Sbjct: 378 LNAKFVAILGEDELAKEVINIKEMGTGEQTEVPLPSVVDYLKERLS 423


>gi|290559258|gb|EFD92597.1| Anticodon-binding domain protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 329

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 111/348 (31%), Gaps = 35/348 (10%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKD 159
           ++     P +      +F+S  +SYR LP          R EL     G+ R+R     D
Sbjct: 10  EEEYALKPMNCPFSAILFKSKTRSYRELPMRLSDYGFLHRYELEGTLDGLFRTRLMEQND 69

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           ++ + +  +             +   +        ++  + P       E          
Sbjct: 70  SHVYVMEDQIESEMMRMF--DIMDDTYNPFDLKPIIKLATRPEKRIGDEE---------- 117

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                    D          D       I E   A Y    D++         +   VS 
Sbjct: 118 -------LWDKAEKILKETLDKRGYNYEIKEGDGAFYGPKIDIYALDFSGKPEDAYAVST 170

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGI 338
             ++    F    ++     A + G+D K+H+   +    +G++     +I    +    
Sbjct: 171 IQLD----FNLAVRFD----AKYIGSDNKEHFPIVIHRSIMGSIGRFMGIIL---ENSKG 219

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             P  ++P ++ ++ I   +       E +  +L + G  V  +     +  +     L 
Sbjct: 220 DLPFWISPVQVRVLTITEKNA---KYAENVIKKLKENGIRVDSELDSGTLEYKIRKGQLE 276

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             P  +I+GSK    + + +++R      ++ L+E I+         R
Sbjct: 277 KIPYIIIIGSKEEEKNTISVRNRKGKTDYNIDLDEFISERLEDIKQRR 324


>gi|288555365|ref|YP_003427300.1| histidyl-tRNA synthetase [Bacillus pseudofirmus OF4]
 gi|288546525|gb|ADC50408.1| histidyl-tRNA synthetase [Bacillus pseudofirmus OF4]
          Length = 426

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/417 (13%), Positives = 125/417 (29%), Gaps = 12/417 (2%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLAD 98
             LP   +    +    +E  +R    E+  P  +  +++        D   KEM    D
Sbjct: 11  DLLPGEIEIWQYIEQKSKEICSRYNYKEIRTPIFEHTEVFARGVGETTDIVQKEMYTFTD 70

Query: 99  RNDKAMIYGPTHEEVMTDIFR-SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           R ++++   P     +   F  + +    + P   +     FR E      + +  +F +
Sbjct: 71  RGERSLTLRPEGTAGVVRSFVGNKLYGEASQPTKLFYTGPMFRYERPQAGRMRQFVQFGV 130

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           +   S D   +    +        L +     + +     ES     D           G
Sbjct: 131 EALGSADPAIDAEVLALVMSIYYELGLTDIKLVLNSLGDKESREAHRDALI-NHFKPSIG 189

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISL--------NSIVEQWTAPYAATSDVHNEKLFD 269
           E    C       P+   +   D    L        +   E+  A +       ++    
Sbjct: 190 EFCSDCQNRLEKNPLRILDCKKDREHPLMQTAPSIHDYYTEESAAYFKEVKQHLDQMNLP 249

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
            + +   V          F    +     + T     G+ + +     G     +  A  
Sbjct: 250 YVVDPTLVRGLDYYNHTAFEVMAEGEGFGAITTLCGGGRYNGLVQEFGGPETPGIGFAFS 309

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                                   +       +    ++  +L + G     D + +++ 
Sbjct: 310 IERLIMALKAQGKVPDFGNQLDCFLVTLGDAAKAKSVELLYQLRQAGIRCDKDYLDKKMK 369

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +QF  AD L      I+G   ++++++ +K+  TG + +++L+  I Y   +    +
Sbjct: 370 AQFKAADRLNVRYTAILGDNELNENRINVKNMETGEQVEVALDTFITYMKEQVEGGK 426


>gi|196250095|ref|ZP_03148789.1| histidyl-tRNA synthetase [Geobacillus sp. G11MC16]
 gi|196210279|gb|EDY05044.1| histidyl-tRNA synthetase [Geobacillus sp. G11MC16]
          Length = 426

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/406 (14%), Positives = 118/406 (29%), Gaps = 18/406 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  + R+   R G  E+  P  +  +L++       D   KEM    D+  +A+   
Sbjct: 20  WQYVEQVARDLCRRYGYEEIRTPIFEHTELFLRGVGDTTDIVQKEMYTFEDKGGRALTLR 79

Query: 108 PTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   F  H      N P   Y     FR E        +  +F ++        
Sbjct: 80  PEGTAPVVRAFVEHKLYGSPNQPVKLYYAGPMFRYERPEAGRFRQFVQFGVEA--IGSSD 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P             Y  +  +     I    +          E +V   +      C   
Sbjct: 138 PAIDAEVMALAMHIYKALGLKRIRLVINSLGDVDS--RRAHREALVRHFSDRIHELCPDC 195

Query: 227 FMDFPIPSENTDFDDIIS-----------LNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            +                           L+ + ++  A +              + +++
Sbjct: 196 QVRLETNPLRILDCKKDRDHELMASAPSILDYLNDESRAYFEKVKQYLTMLDIPFVIDSR 255

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V          F   ++     +A      G+ + +     G     +  A+       
Sbjct: 256 LVRGLDYYNHTTFEIMSEAEGFGAAATLCGGGRYNGLVQEIGGPETPGIGFALSIERLLA 315

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   +     + A  +  +D   ++   L + G  V  D +G ++ +Q   A
Sbjct: 316 ALEAEGIELPIHRGIDCYVVAVGERAKDETVRLVYELRRAGLRVEQDYLGRKMKAQLKAA 375

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D LG     I+G + +      +KH  +G + D+ L E+ ++   R
Sbjct: 376 DRLGASFVAIIGDEELEKQTAAVKHMASGEQTDVPLGELASFLIER 421


>gi|85708652|ref|ZP_01039718.1| prolyl-tRNA synthetase [Erythrobacter sp. NAP1]
 gi|85690186|gb|EAQ30189.1| prolyl-tRNA synthetase [Erythrobacter sp. NAP1]
          Length = 514

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/411 (16%), Positives = 132/411 (32%), Gaps = 87/411 (21%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    + V  ++ +     G      P       +  E+   D + KEM  +
Sbjct: 37  GCMVIKPWGYGIWERVQRLMDDRIKAAGIANAYFPLFIPLANFEREADHVDGFAKEMAVV 96

Query: 97  ADRN-----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                                ++ ++  PT E ++ D     I+S+R+LP    Q     
Sbjct: 97  THHRLIADGKGGLIPDPEAKLEEPLVVRPTSETIIGDAMARWIQSWRDLPLMLNQWANVV 156

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E+R R  + R+ EFL ++ ++   T E +    ++                       
Sbjct: 157 RWEMRTRMFL-RTSEFLWQEGHTAHATREEAVEETHRALE-------------------- 195

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E                   D  +P    +  +        E W       
Sbjct: 196 --MYRACVEE-------------------DLAMPVIAGEKPENERFPGADETW------- 227

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                        E      + ++ G   Y GT ++      ++  +G        S+G 
Sbjct: 228 -----------SIEAMMQDGKALQAGTSHYLGTSFASAAGIQYQDKEGTQQLCHTTSWGT 276

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVG 376
            + R++  V+ +  D  G+  P  +AP +I ++ +   K  D+V    CE++ A L+   
Sbjct: 277 -STRMIGGVVMTHGDDDGLRVPPRIAPHQIIILPMLREKPEDEVVLAYCEEVRAALASQW 335

Query: 377 -----CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                  V  D    +  ++       G P+ V VG + + + KV +  R 
Sbjct: 336 SMGEPVRVLLDKTPGKAAAKRWSWVRKGAPVIVEVGPRDMDEGKVAVLRRD 386


>gi|307329105|ref|ZP_07608272.1| glycyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306885300|gb|EFN16319.1| glycyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 460

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/432 (14%), Positives = 132/432 (30%), Gaps = 36/432 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    + + ++W  SG   ++   +    
Sbjct: 33  WDYGPLGVELKENIKRQWWRSMVTSRDDVVGLDSSVILAREVWEASGHVATFTDPLTECT 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +        E           ++        +        E +   G++ +     
Sbjct: 93  SCHKR-FRADHLEEAYEAKH-GRLPENGLADVNCPHCGNKGSFTEPKQFSGLLATHLGPT 150

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG----- 204
           +D+ S       +       F++  +   R         G            I       
Sbjct: 151 QDSGSIAYLRPETAQGIFTNFLAVQQTSRRKPPFGIAQVGKSFRNEITPGNFIFRTREFE 210

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +  EF V     ET      +              +I       E+ +     T+D+  
Sbjct: 211 QMEMEFFVKPGEDETWHEYWMEQRWNWYRDLGLQEANIRWYEHPKEKLSHYSKRTADIEY 270

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F      +     G+     F        S    + F    G+     +     G  
Sbjct: 271 RFSFGGSEWGELE---GLANRTDFDLKAHSAASGQDLSYFDQEAGERWTPYVIEPAAGVG 327

Query: 323 RVVAAVIESSH------DGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYA 370
           R + A +  ++      + KG +   +V      L  +K      + +       + + A
Sbjct: 328 RAMLAFMLDAYVEDEAPNAKGKMEKRTVMRLDPRLAPVKVAVLPLSRNPQLSPKAKGLAA 387

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R T  +E +S
Sbjct: 388 DLRKHW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRERDTMKQERVS 445

Query: 431 LEEVINYASHRF 442
           L+++ +Y   R 
Sbjct: 446 LDQIQSYLGGRL 457


>gi|138896141|ref|YP_001126594.1| histidyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|166227970|sp|A4IR95|SYH_GEOTN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|134267654|gb|ABO67849.1| Histidyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 426

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/406 (14%), Positives = 118/406 (29%), Gaps = 18/406 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  + R+   R G  E+  P  +  +L++       D   KEM    D+  +A+   
Sbjct: 20  WQYVEQVARDLCRRYGYEEIRTPIFEHTELFLRGVGDTTDIVQKEMYTFEDKGGRALTLR 79

Query: 108 PTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   F  H      N P   Y     FR E        +  +F ++        
Sbjct: 80  PEGTAPVVRAFVEHKLYGSPNQPVKLYYAGPMFRYERPEAGRFRQFVQFGVEA--IGSSD 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P             Y  +  +     I    +          E +V   +      C   
Sbjct: 138 PAIDAEVMALAMHIYKALGLKHIRLVINSLGDVDS--RRAHREALVRHFSDRIHELCPDC 195

Query: 227 FMDFPIPSENTDFDDIIS-----------LNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                                        L+ + ++ +A +              + +++
Sbjct: 196 QARLETNPLRILDCKKDRDHELMASAPSILDYLNDESSAYFEKVKQYLTMLDIPFVIDSR 255

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V          F   ++     +A      G+ + +     G     +  A+       
Sbjct: 256 LVRGLDYYNHTTFEIMSEAEGFGAAATLCGGGRYNGLVQEIGGPETPGIGFALSIERLLA 315

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   +     + A  +  +D   ++   L + G  V  D +G ++ +Q   A
Sbjct: 316 ALEAEGIELPIHRGIDCYVVAVGERAKDETVRLVYELRRAGLRVEQDYLGRKMKAQLKAA 375

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D LG     I+G + +      +KH  +G + D+ L E+ ++   R
Sbjct: 376 DRLGASFVAIIGDEELEKQTAAVKHMASGEQTDVPLGELASFLIER 421


>gi|319777143|ref|YP_004136794.1| glycyl-tRNA synthetase [Mycoplasma fermentans M64]
 gi|318038218|gb|ADV34417.1| Glycyl-tRNA synthetase [Mycoplasma fermentans M64]
          Length = 453

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/430 (13%), Positives = 139/430 (32%), Gaps = 42/430 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ---NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           + + PLG    DN+ A  + E     +   + +    L +  +WV SG   ++   ++  
Sbjct: 35  WDYGPLGSLLKDNIEAAWKSEFIKKEKNNHL-LDSKILMNPQVWVTSGHVINFNDPLIEN 93

Query: 97  A--------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
                    D+  + +      E++  D  +  ++                R        
Sbjct: 94  KVNGKRYRADKLVQEIDPNIIPEKMTNDEIKKFLEKNLKEYDGAKTNWSDIRKFNLMFET 153

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH----RLGLKSIPMRAESGPIGG 204
                E      Y    T +G   ++  +  S          ++G            I  
Sbjct: 154 KQGVTEETKNKIYLRPETAQGIFVNFKNVQRSMRSKLPMGIGQVGKSFRNEVTPGNFIFR 213

Query: 205 DLSHE------FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
               E      F    +  +   +  K    F         +++       E+ +   + 
Sbjct: 214 TREFEQMELEVFCHPKEANKLYKYYIKKAEKFA-EYLGLSKENVRIREHEKEELSHYSSG 272

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSY 317
           TSD+     F    E   ++ R     +        +   +  +      +     +   
Sbjct: 273 TSDIEYLFPF-GWGELLGIANRTDYDLNAH----MKATGENLEYVDPVTNEKFVPFVIEP 327

Query: 318 GIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            IG  R++ A++  S+D +          +    ++AP++++++ +        D   ++
Sbjct: 328 SIGLDRLMLAILIDSYDEEKLEKDDSRVVLHLHKNLAPYQVAVLPLVKK---LNDKATEV 384

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y +L K G  V +D+ G  IG ++   D +G P  V +    +  + V I+ R +  ++ 
Sbjct: 385 YEKLLKAGLSVTYDETG-SIGKRYRRQDAIGTPYCVTIDFDSLEKNTVTIRDRDSMKQKT 443

Query: 429 MSLEEVINYA 438
           + +  ++   
Sbjct: 444 VLINNLLKEL 453


>gi|312116222|ref|YP_004013818.1| prolyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
 gi|311221351|gb|ADP72719.1| prolyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
          Length = 514

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 135/449 (30%), Gaps = 101/449 (22%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           +R  MI +         P G    + V   +      TG      P       L  E+  
Sbjct: 33  VRGCMIIK---------PWGYGIWERVQKGLDARIKETGHENCYFPIFIPMSFLAKEAEH 83

Query: 86  YDSYGKEMLRLADRN----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            + + KEM  +                     + +I  PT E ++ D F+  +KSYR+LP
Sbjct: 84  VEGFAKEMAVVTHHRLKNIDGKLVPDPEAELQEPLIVRPTSETIIGDAFQRWVKSYRDLP 143

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
               Q     R E+R R   +R+ EFL ++ ++                           
Sbjct: 144 ILINQWANVVRWEMRTRM-FLRTTEFLWQEGHTAH------------------------- 177

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                  A+      +      V     E  +       + P        D+  S+    
Sbjct: 178 -------ADKTDAMAETLRMLEVYRSFAEDVLAMPVVAGEKPENERFPGADNTYSI---- 226

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
                                  E      + ++ G   Y GT ++   +  F+   G+ 
Sbjct: 227 -----------------------EAMMQDGKALQAGTSHYLGTHFAEAQNIRFQNEAGEL 263

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACE 366
                 S+G+ + R++  VI +  D  G+  P ++AP +I ++ +   K  D    + C 
Sbjct: 264 ALCHTTSWGV-STRLIGGVIMTHGDDDGLRLPPAIAPKQIVIVPMLRDKPEDAAVVEFCT 322

Query: 367 KIYARLSKV-----GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            + A L+             D+   +   +       G PL + +G +  S   V    R
Sbjct: 323 SLAAELNAKAAFGEPIRAHIDNRKIKSADKRWDWVRRGAPLILEIGPRDASGGNVTFTRR 382

Query: 422 L---TG---IREDMSLEEVINYASHRFSN 444
                G       +   E +  A      
Sbjct: 383 DALRDGPKVKSHSLPRAEFVAGAEGLLRE 411


>gi|329766897|ref|ZP_08258425.1| glycyl-tRNA synthetase [Gemella haemolysans M341]
 gi|328837622|gb|EGF87247.1| glycyl-tRNA synthetase [Gemella haemolysans M341]
          Length = 457

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/440 (12%), Positives = 141/440 (32%), Gaps = 47/440 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +      +   W  SG   ++   M+   
Sbjct: 28  WDYGPLGVELKNNVKKAWWKKFIQESPYNVGLDAAIFMNPRTWEASGHVGNFSDPMMDCK 87

Query: 98  --------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF--RDELRPRF 147
                   D+  +   +   +E+V+ D                   +        +R   
Sbjct: 88  VCKSRLRADKLIEEYYFNEKNEDVVVDGLPFEELEAIIDRENIKCPECGSHDYTNIRQFN 147

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAES 199
            + ++ + +++++ S       +       F +  R   +         G          
Sbjct: 148 LMFKTNQGVVENSTSQIYLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPG 207

Query: 200 GPIGGDLSHEFIV---LADTG-ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
             I      E +      + G E     +          +     + I L    ++  + 
Sbjct: 208 NFIFRTREFEQMELEFFCEPGTELDWHTTWKNNCEKFLLDLGMTKENIRLRDHDQEELSH 267

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKG-ADGKDHYV 312
           Y+  +     K      E   +++R       H+ + G         T++  +  +    
Sbjct: 268 YSNATTDIEFKFPFGWGELWGIASRTDYDLKQHMEHSGQD------LTYQDLSTNEKFIP 321

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRD 363
                 +G  RV+ A +  +++ + +          +  ++APFK +++ +        D
Sbjct: 322 YCIEPSVGVDRVLLAFLCDAYNEEEVGENDTRTVLKFHPALAPFKAAVLPLSKK---LSD 378

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++Y +L      V +D+ G  IG ++   D +G P  +    +  +D  V ++ R T
Sbjct: 379 KAVEVYQQL-AADFMVDFDETG-SIGKRYRRQDEVGTPFCITYDFESENDGMVTVRDRDT 436

Query: 424 GIREDMSLEEVINYASHRFS 443
             +  + + E+  Y   +  
Sbjct: 437 MEQTRIPIAELKQYIEEKIK 456


>gi|148381458|ref|YP_001255999.1| glycyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153933636|ref|YP_001385833.1| glycyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153935948|ref|YP_001389240.1| glycyl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|148290942|emb|CAL85078.1| glycyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|152929680|gb|ABS35180.1| glycyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152931862|gb|ABS37361.1| glycine--tRNA ligase [Clostridium botulinum A str. Hall]
          Length = 463

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 144/445 (32%), Gaps = 57/445 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + + PLG +  +NV     ++       E      +    L ++ +W  SG    +   +
Sbjct: 34  WDYGPLGVELKNNVKKAWWKKF----VQESPYNVGIDAAILMNSQVWAASGHVGGFSDPL 89

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS--YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +   +            EE MT+       +  + N     Y                  
Sbjct: 90  MDCKEC-KARFRADKLVEEHMTEQGVEKASADGWSNEKLKQYIDDNGIECPKCKAKNFTD 148

Query: 152 SREFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            R+F +       +T +     Y        +FV++  +      K     A+ G    +
Sbjct: 149 IRQFNLMFKTFQGVTEDAKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRN 208

Query: 206 LSH----------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                              EF     T        KD+    + +   + ++I   +   
Sbjct: 209 EITPGNFTFRTREFEQMELEFFCKPGTDLEWFNYWKDYCWNFLINLGINKENIRFRDHSQ 268

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGA-DG 307
           E+ +    ATSD+          E   V+ R       F              +      
Sbjct: 269 EELSHYSNATSDI-EFLFPFGWGELWGVADR-----TDFDLKKHMEHSGEDLNYLDPATK 322

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHD 358
           + +        +GA RVV A +  ++D            +    ++APFK +++ +    
Sbjct: 323 ERYVPYCIEPSLGADRVVLAFLVDAYDEEELEGGDVRNVLHLHPALAPFKAAVLPLSKK- 381

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  +++Y+ LSK   ++ +D+ G  IG ++   D +G P  + V    + D+ V I
Sbjct: 382 --LSDKSQEVYSMLSKK-FNIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTI 437

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +  +++ E+  +   +  
Sbjct: 438 RDRDTMNQIRVNINELEKFIEDKLE 462


>gi|258652148|ref|YP_003201304.1| glycyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
 gi|258555373|gb|ACV78315.1| glycyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
          Length = 460

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/433 (14%), Positives = 130/433 (30%), Gaps = 36/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  DN+         R+    + +    +    +WV SG   ++   ++   
Sbjct: 33  WDYGPLGVELKDNIKRQWWNAMIRSRDDIVGLDSSVILPRQVWVASGHVAAFVDPLVECT 92

Query: 98  --------DRNDKAMIYGPTHEEVMTD----IFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
                   D  ++        +               +     P  F  +   +   +  
Sbjct: 93  SCHKRFRADHLEEEFAEKKGRQPENGLADIACPNCGTRGAWTEPKEFNGLLKTYLGPVED 152

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+   R    +  +        S        +  +    R  +        +      
Sbjct: 153 ESGLHYLRPETAQGIFVNYNNVAASSRKKPPFGIGQIGKSFRNEITPGNFIFRTREFEQM 212

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               F+      E   +      D+ +       D++       E+ +     T D+   
Sbjct: 213 EMEFFVKPGTDEEWHQYWIDTRTDWYV-DLGIARDNLRQYEHPKEKLSHYSKRTVDIEYR 271

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             F      +     GI     F   T   +S    + F+   G+     +     G  R
Sbjct: 272 FHFQGSEWGELE---GIANRTDFDLKTHSEHSGVDLSYFEQESGERWTPYVIEPAAGVGR 328

Query: 324 VVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + A +  ++                       +AP K +++ + + +         + A
Sbjct: 329 PMMAFLLEAYAQDEAPNTKGGVDVRTVLRLDPRLAPIKAAVLPL-SRNADLSPIARDLAA 387

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K   +V +DD G+ IG ++   D +G P  + V     +D  V I+ R T  +E + 
Sbjct: 388 SLRKSW-NVDFDDAGQ-IGRRYRRQDEIGTPFCLTVDFDTATDQAVTIRDRDTMSQERVG 445

Query: 431 LEEVINYASHRFS 443
           L++VI Y   R +
Sbjct: 446 LDQVIGYLGARLA 458


>gi|210623798|ref|ZP_03294058.1| hypothetical protein CLOHIR_02009 [Clostridium hiranonis DSM 13275]
 gi|210153380|gb|EEA84386.1| hypothetical protein CLOHIR_02009 [Clostridium hiranonis DSM 13275]
          Length = 420

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/407 (13%), Positives = 114/407 (28%), Gaps = 20/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            + +    RE     G  EM  P  +  +L+        D   KEM    D+ D+ +   
Sbjct: 20  WNYLENKFREICALYGYQEMRTPIFEHTELFQRGVGDTTDIVQKEMYSFKDKGDREITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F  +       P   + I   FR E        +  +F ++   S   + 
Sbjct: 80  PEGTAGAVRAFIENKLYADTQPTKMFYITPCFRYERPQAGRQRQFHQFGIEAIGSDSPSM 139

Query: 168 EG------SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +        +              + +G        +        S   ++     E + 
Sbjct: 140 DAEAISLAMQFFRELGLKDLKVSLNSVGCPVCRKEYDKKLREYLDSKSEVLCDMCNERKE 199

Query: 222 FCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHNEKLFDS-----LPENK 275
                 +D   P       DI   ++++ +   A +A   +   E          +    
Sbjct: 200 KNPMRVIDCKNPQCKEAITDIPYMIDNLCDDCKAHFAELEEYLKEMEIPYEIDKTIVRGL 259

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R          G + ++     +     +      G+ GIG       ++ +  D 
Sbjct: 260 DYYKRTAFEIIAENIGAQSTVCGGGRY-DGLVEQLGGPKGTSGIGFALGAERLLLTLEDA 318

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
              I         I  I         +     +   L         D +   + +QF  +
Sbjct: 319 GIEIENPQSTDIFIVTI-----GDEAKKKSFGLLKELRDNHISADKDHLSRSVKAQFKYS 373

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D +     +++G   + +++  +K+  T  +  + L E++     R 
Sbjct: 374 DKINAKFTIVIGDDELKNNEASLKNMATSEQHTVKLSELVKELKERL 420


>gi|322807844|emb|CBZ05419.1| glycyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 463

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 145/441 (32%), Gaps = 49/441 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +  +WV SG    +   ++   
Sbjct: 34  WDYGPLGVELKNNVKKAWWKKFVQESPYNVGLDAAILMNNQVWVASGHVGGFSDPLMDCK 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKS--YRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           +            EE MT+       +  + N     Y                   R+F
Sbjct: 94  EC-KARFRADKLVEEHMTEQGVEKASADGWSNEKLKQYIDDNGIECPKCKAKNFTDIRKF 152

Query: 156 LMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
            +       +T +     Y        +FV++  +      K     A+ G    +    
Sbjct: 153 NLMFKTFQGVTEDAKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRNEITP 212

Query: 209 ---------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                          EF     T        KD+    + +   + ++I   +   E+ +
Sbjct: 213 GNFTFRTREFEQMELEFFCKPGTDLEWFNYWKDYCWNFLINLGINKENIRFRDHSQEELS 272

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGA-DGKDHY 311
               ATSD+     F    E   V+ R       F              +      + + 
Sbjct: 273 HYSNATSDIEFLFPF-GWGELWGVADR-----TDFDLKKHMEHSGEDLNYLDPATKERYV 326

Query: 312 VQMGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCR 362
                  +GA RVV A +  ++D            +    ++APFK +++ +        
Sbjct: 327 PYCIEPSLGADRVVLAFLVDAYDEEELEGGDVRNVLHLHPALAPFKAAVLPLSKK---LS 383

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +++Y+ L K   ++ +D+ G  IG ++   D +G P  + V    + D+ V I+ R 
Sbjct: 384 DKSQEVYSMLRKK-FNIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTIRDRD 441

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +  +S+ E+  +   +  
Sbjct: 442 TMNQIRVSINELEKFIEDKLE 462


>gi|238810062|dbj|BAH69852.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 466

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/430 (13%), Positives = 139/430 (32%), Gaps = 42/430 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ---NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           + + PLG    DN+ A  + E     +   + +    L +  +WV SG   ++   ++  
Sbjct: 48  WDYGPLGSLLKDNIEAAWKSEFIKKEKNNHL-LDSKILMNPQVWVTSGHVINFNDPLIEN 106

Query: 97  A--------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
                    D+  + +      E++  D  +  ++                R        
Sbjct: 107 KVNGKRYRADKLVQEIDPNIIPEKMTNDEIKKFLEKNLKEYDGAKTNWSDIRKFNLMFET 166

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH----RLGLKSIPMRAESGPIGG 204
                E      Y    T +G   ++  +  S          ++G            I  
Sbjct: 167 KQGVTEETKNKIYLRPETAQGIFVNFKNVQRSMRSKLPMGIGQVGKSFRNEVTPGNFIFR 226

Query: 205 DLSHE------FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
               E      F    +  +   +  K    F         +++       E+ +   + 
Sbjct: 227 TREFEQMELEVFCHPKEANKLYKYYIKKAEKFA-EYLGLSKENVRIREHEKEELSHYSSG 285

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSY 317
           TSD+     F    E   ++ R     +        +   +  +      +     +   
Sbjct: 286 TSDIEYLFPF-GWGELLGIANRTDYDLNAH----MKATGENLEYVDPVTNEKFVPFVIEP 340

Query: 318 GIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            IG  R++ A++  S+D +          +    ++AP++++++ +        D   ++
Sbjct: 341 SIGLDRLMLAILIDSYDEEKLEKDDSRVVLHLHKNLAPYQVAVLPLVKK---LNDKATEV 397

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y +L K G  V +D+ G  IG ++   D +G P  V +    +  + V I+ R +  ++ 
Sbjct: 398 YEKLLKAGLSVTYDETG-SIGKRYRRQDAIGTPYCVTIDFDSLEKNTVTIRDRDSMKQKT 456

Query: 429 MSLEEVINYA 438
           + +  ++   
Sbjct: 457 VLINNLLKEL 466


>gi|296121907|ref|YP_003629685.1| glycyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
 gi|296014247|gb|ADG67486.1| glycyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
          Length = 551

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 118/368 (32%), Gaps = 40/368 (10%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +   +  L   +D A +   T + +  +       S   +PF   QI   FR+E+ PR  
Sbjct: 211 FKTTLGALGTEDDAAFLRPETAQGMFVNFKNVCDSSRVKIPFGIAQIGKSFRNEITPRNF 270

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             RSREF   +   F   P+ S   Y        + +  LG+           I  + +H
Sbjct: 271 TFRSREFEQMEMEFFCH-PKDSLAWYTYWRDRRYKWYTDLGIS------SDNLILREHTH 323

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E +     G   V       ++  P         +      E     +    D+ +    
Sbjct: 324 EELAHYSVGTADV-------EYAFP--------FLPAGEYGELEGVAHRGDFDLRSHSQG 368

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               E   +       G   Y G   S    + F     +     +     G  R   A 
Sbjct: 369 KLRKEGNELVVEAGTDGKPKYLG---SGKDLSYFDDQSRERFLPHVIEPAAGCDRATLAF 425

Query: 329 IESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           +  ++                       +AP K+++  +   D    +   +IY    + 
Sbjct: 426 LCEAYHEDKQPDEKGEMQERVVLKLHPRLAPVKVAIFPLIKKD-GMPEKAAEIYREFKRA 484

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G    +D     IG ++   D +G P  + V    +S   V I++R T  +  + ++EV+
Sbjct: 485 GITAAYDQQAA-IGRRYRRMDEIGTPYCITVDGDTMSADTVTIRNRDTLEQIRLPVKEVV 543

Query: 436 NYASHRFS 443
           ++ +    
Sbjct: 544 DHIAKLVR 551



 Score = 40.1 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 22/92 (23%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIE------------- 68
           R G++ Q S       G + + PLG +   NV     ++       E             
Sbjct: 15  RRGLMFQSSEIYGGLNGFWDYGPLGVELKRNVRQAWWDDMITR-HDELSIPAGAPSTFDM 73

Query: 69  --MSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             +    +    +W  SG +D +  +M+   +
Sbjct: 74  VGVETSIIMHPQVWKVSGHFDLFCDKMVDCKE 105


>gi|58699329|ref|ZP_00374107.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58534152|gb|EAL58373.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 356

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 3/129 (2%)

Query: 5   KYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
             +L  L+E   RD    +  + L    I + + G   W   G    + + + IR++   
Sbjct: 227 NAYLECLKEAEKRDHRKIAKDMDLF--HIQEEAVGQVFWHEQGYILYNVLESYIRKKLIN 284

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P L S +LW +SG +D + + M  + +   K +   P +      IF SH +
Sbjct: 285 NGYFEVKTPILVSKELWEKSGHWDKFRENMFIVDESESKKLAIKPMNCPCHVQIFNSHTR 344

Query: 124 SYRNLPFTF 132
           SYR+LP   
Sbjct: 345 SYRDLPIRM 353


>gi|326791444|ref|YP_004309265.1| glycyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326542208|gb|ADZ84067.1| glycyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 461

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/444 (14%), Positives = 140/444 (31%), Gaps = 56/444 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + + PLG +  +NV     ++       E      +    L +  +WV SG    +   +
Sbjct: 33  WDYGPLGVEFKNNVKKAWWKKFI----QESPYNVGVDCALLMNPQVWVASGHVGGFNDPL 88

Query: 94  LRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           +      +R     I     +E  T         + N     +  +   +          
Sbjct: 89  MDCKACKERFRADKIIEDYLDEQGTPEVVDG---WSNEQMQNFIKEKAIKCPSCGAHDFT 145

Query: 151 RSREFLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSI 193
             R+F +       +T +     Y                             ++G    
Sbjct: 146 DIRQFNLMFKTFQGVTEDSKNVVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQVGKSFR 205

Query: 194 PMRAESGPIGGDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                   I      E     F     T        + +    + S   D +++   +  
Sbjct: 206 NEITPGNFIFRTREFEQMELEFFCKPGTELEWFDYWRSYCKNFLLSLGVDENNMRLRDHS 265

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E+ +    AT+D+   K      E   +++R            ++S      F     +
Sbjct: 266 AEELSHYSNATTDI-EFKFPFGWGELWGIASRTDFDLKQHQ---EHSKQDMTYFDPTTNE 321

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQ 359
            +   +    +GA RV  A +  ++D +            +  ++AP K +++ +     
Sbjct: 322 KYLPYVIEPSLGADRVTLAFLCEAYDEETLEDGDTRTIFRFHPALAPVKAAVLPLSKK-- 379

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   K++  L     +V +D+ G  IG ++   D +G P  +      + D KV ++
Sbjct: 380 -LSEDAVKVFDIL-AKEFNVEFDEAG-SIGKRYRRQDEIGTPFCITFDFDSLEDQKVTVR 436

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R +  +E +++E+++ Y   R +
Sbjct: 437 DRDSMAQERIAIEDLVEYIRERMA 460


>gi|311113190|ref|YP_003984412.1| glycyl-tRNA synthetase subunit beta [Rothia dentocariosa ATCC
           17931]
 gi|310944684|gb|ADP40978.1| glycyl-tRNA synthetase beta subunit [Rothia dentocariosa ATCC
           17931]
          Length = 459

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/455 (13%), Positives = 135/455 (29%), Gaps = 51/455 (11%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNV-----NAIIREEQNRTGAIEMSVPTLQS 76
           R G + Q      G    + + PLG +  +N+        +R   +  G   +    +  
Sbjct: 16  RRGFVFQAGEIYGGSRSAWDYGPLGVELKENIRQQWWQRFVRSRADMVG---LDSSVILP 72

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +W  SG   ++   M  L +           H     +  +                 
Sbjct: 73  RPVWEASGHVATF---MDPLVECLSCHRRQRQDHLIEAFEAKKGRAPENMGEVVCPNCGT 129

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL-------- 188
                E +   G++++    + +          +       F + +    +         
Sbjct: 130 RGEWTEPQNFSGLLKTYLGPVDNEEGLHFLRPETAQGIFVNFNNVVTAARKRPPFGIGQI 189

Query: 189 GLKSIPMRAESGPIGGDLSHEFI-----VLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           G            I      E +     V  D  +       +           + +++ 
Sbjct: 190 GKAFRNEITPGNFIFRTREFEQMEIEYFVHPDEADKHFNAWVEDCWNWFVDLGINPENMR 249

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             +   +      A T D+     F      E   V+ R      +     ++S      
Sbjct: 250 RFDVPEDDRAHYSAGTIDIEYRFGFQGGEWGELMGVANRTDYDLGVHN---EHSNAKLEY 306

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFK 348
           F  A G+ +   +     G  R + A +  ++                       +AP K
Sbjct: 307 FDQASGERYVPYVIEPSFGLTRSMMAFLVDAYVEDEAPNTKGGVDKRVVLKLDPRLAPVK 366

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            +++ +    +   +   K+ A L     ++ +D+ G  IG ++   D +G P  + V  
Sbjct: 367 AAVLPLSKKPE-LSEPAHKLAADLCGAW-NIDYDEAGA-IGRRYRRQDEIGTPFCITVDF 423

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             + D  V I+ R T  +E ++L++V  Y + R +
Sbjct: 424 DTLEDQAVTIRERDTMSQERVALDQVKAYLAARLA 458


>gi|296423890|ref|XP_002841485.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637725|emb|CAZ85676.1| unnamed protein product [Tuber melanosporum]
          Length = 419

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 9/186 (4%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                  K  +   IE+GH F+ GT+Y++P+ A      G+   + MG +GIG  R++ A
Sbjct: 233 CPKCGVGKLKTTGAIELGHTFHLGTRYTVPLRANVLNEAGEWKPMVMGCHGIGVSRMIPA 292

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC---RDACEKIYARLSKVG------CD 378
           + E   D  G+ WP  VAP+ + L+            ++  E +Y  L   G       D
Sbjct: 293 IAEGYSDHNGLCWPRVVAPYDVVLVCGSMKKNAVVPPKEDIEAVYDVLVSKGLAGGTDVD 352

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  DD  + I  +   A L+G+P+  I+G  +V   KVEI+ R TG R  + L  +    
Sbjct: 353 VILDDRDKDIVWKIKDAVLVGYPIMCIMGKSWVDSKKVEIEVRKTGARLGVELGNLRTVI 412

Query: 439 SHRFSN 444
               + 
Sbjct: 413 EGLLNE 418



 Score = 40.1 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 45/103 (43%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKD Y+FD T + +  +Y ++  +Y  +F  +GL  I   A+SG +GG +SHE+   + +
Sbjct: 1   MKDLYTFDATEDAALKTYRQVQGAYQALFEEIGLPYIHAEADSGNMGGSVSHEYHFPSLS 60

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           GE  V    D                  L+    +    +  T
Sbjct: 61  GEDTVISCPDCGYCANEETAQITPQQPILDLAASRIATFHGIT 103


>gi|73981319|ref|XP_860710.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 3
           [Canis familiaris]
          Length = 304

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 102/332 (30%), Gaps = 39/332 (11%)

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           +F    +S+R LP       +  R E      G+ R R F   DA+ F   P+  +    
Sbjct: 1   MFAHRPRSWRELPLRLADFGVLHRAEASGSLGGLTRLRCFQQDDAHIFCA-PDQLEEEIQ 59

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                   ++  LG         + P G                         D      
Sbjct: 60  GCLDFLRSVYAVLGFSFRLA-LSTRPSGF-----------------LGESCLWDQAEQVL 101

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
               ++      +     A Y    DVH   L D+L    +     ++    F    ++ 
Sbjct: 102 QRALEEFGEPWDLKPGDGAFYGPKIDVH---LHDALGRPHQCGTIQLD----FQLPLRFD 154

Query: 296 LPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                 +KG  G       +    +G++  +  V+    +  G  WP  ++PF++ +I +
Sbjct: 155 ----LQYKGQAGVLERPVLIHRAVLGSVERMLGVLA---ESYGGKWPLWLSPFQVVVIPV 207

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
                   +   +   RL   G     D D G  +  +   A L  +  Q +VG K  S 
Sbjct: 208 G---AEQEEYAREAQQRLQAAGLVCDLDADSGLTLSRRVRRAQLAHYNFQFVVGQKEQSK 264

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             V I+ R      +  L E +       +  
Sbjct: 265 KTVNIRTRDNRQLGERDLTEAVQRLLELQNTR 296


>gi|297626120|ref|YP_003687883.1| glycyl-tRNA synthetase (glycine--tRNA ligase) (GlyRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921885|emb|CBL56445.1| Glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 462

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/434 (14%), Positives = 126/434 (29%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    +   ++WV SG    +   ++   
Sbjct: 33  WDYGPLGVELKENIKKQWWRYMVTSRGDIVGLDSSVILPREVWVASGHVAVFNDPLVECQ 92

Query: 98  DRNDKAMIYGPTHEEVM--------------TDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           + + +        E                        ++     P  F  +   +   +
Sbjct: 93  NCHKRFRADQLQEEYAFRKGIADADTVKLEDIPCPNCGVRGKFTEPRDFNMMLETYLGPI 152

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G+   R    +  +        S        V       R  +        +    
Sbjct: 153 HDEAGLHYLRPETAQGIFINFKNVLTSTRMKPPFGVGQTGKSFRNEITPGNFIFRTREFE 212

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                EF V   T E       D           + D++       E+ +     T D+ 
Sbjct: 213 QMEM-EFFVEPGTDEEWHQYWIDHRKAWYVGLGIEEDNLRLFEHPKEKLSHYSKRTVDIE 271

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F      +     GI     F   T   +S    + F  A  K +   +     G 
Sbjct: 272 YKFGFAGSDWGELE---GIANRTDFDLKTHTEHSGTDLSYFDQAQNKHYIPYVIEPAAGL 328

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R   A +  ++                       +AP K++++ + + ++        +
Sbjct: 329 TRSFMAFMVDAYTEDEAPNAKGGVDKRTVLKIDPRLAPVKVAVLPL-SRNEKLSPKARGL 387

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L +   +V +DD    IG ++   D +G P  V +    + D  V I+ R +  +E 
Sbjct: 388 ADELRQYW-NVDFDDAQA-IGKRYRRQDEIGTPYCVTIDFDTLDDDAVTIRERDSMAQER 445

Query: 429 MSLEEVINYASHRF 442
           + L  V  Y S R 
Sbjct: 446 VPLSGVSEYLSSRL 459


>gi|291524968|emb|CBK90555.1| glycyl-tRNA synthetase, dimeric type [Eubacterium rectale DSM
           17629]
          Length = 465

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/444 (14%), Positives = 138/444 (31%), Gaps = 51/444 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     +      L +   WV SG    +   ++   
Sbjct: 32  WDYGNLGVELKNNVKRAWWKKFIQENPYNVGVDCAILMNPKTWVASGHLGGFSDPLMDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           + +++        E+   D       S   + N     +  +         +      R+
Sbjct: 92  ECHER-FRADKIIEDFAQDNGIDLETSVDGWTNEQMVDFIKEHNVPCPSCGKHNFTDIRQ 150

Query: 155 FLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRA 197
           F +       +T +     Y                             ++G        
Sbjct: 151 FNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQVGKSFRNEIT 210

Query: 198 ESGPIGGDLSHEFIV---LADTG---ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                      E +      + G   E   +      D+ I       +D + L      
Sbjct: 211 PGNFTFRTREFEQMELEFFCEPGTDLEWFKYWRCFCRDWLI--SLGIKEDEMRLRDHDPA 268

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y+  +            E   ++ R            + S      F     + + 
Sbjct: 269 ELAFYSKGTTDIEFLFPFGWGELWGIADRTDYDLGRHQ---EVSGQDLTYFDDQKNEKYL 325

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKG------------IIWPDSVAPFKISLINIKAHDQ 359
             +    +GA RVV A + +++D +               +  ++AP KI ++ +     
Sbjct: 326 PYVIEPSLGADRVVLAFLCAAYDEEDIGTPEKPDVRTVFHFHPALAPVKIGVLPLSKK-- 383

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              ++ EK++A+LSK   +  +DD G  IG ++   D +G P  V        D  V ++
Sbjct: 384 -LNESAEKVFAQLSKT-YNCEYDDRG-TIGKRYRRQDEIGTPFCVTYDFDSEEDHCVTVR 440

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R T  +E ++++E+  Y + +F 
Sbjct: 441 DRDTMEQERIAIDELDAYFAKKFE 464


>gi|329314241|gb|AEB88654.1| Glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus T0131]
          Length = 463

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/443 (13%), Positives = 139/443 (31%), Gaps = 55/443 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN-----RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +NV     ++         G   +    L +  +W  SG  +++   M+
Sbjct: 32  WDYGPLGVELKNNVKKAWWQKFITQSPFNVG---IDAAILMNPKVWEASGHLNNFNDPMI 88

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D +          E+ M D+          L F   +  +     + P        E
Sbjct: 89  DNKD-SKIRYRADKLIEDYMQDVKGDENFIADGLSFEQMKKIIDDEGIVCPVSKTANWTE 147

Query: 155 ---FLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFH-----------------RL 188
              F +       +T + +   +        +FV+Y  +                   R 
Sbjct: 148 IRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRN 207

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +        +          F    +  E Q +      D+          + + L   
Sbjct: 208 EITPGNFIFRTREFEQMELEFFCKPGEEIEWQNYWKTFASDWLTN--LNMSSENMRLRDH 265

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   + Y+  +     K      E   +++R            ++S            +
Sbjct: 266 DEDELSHYSNATTDIEYKFPFGWGELWGIASRTDFDLRKH---AEHSGEDFRYHDPETNE 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHD----------GKGIIWPDSVAPFKISLINIKAHD 358
            +        +GA RV  A +  ++D             + +  ++AP+K +++ +    
Sbjct: 323 KYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKK- 381

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   KI+ +LS     + +D+  + IG ++   D +G P  V      + D++V +
Sbjct: 382 --LSGEAIKIFEQLSSK-FSIDFDES-QSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTV 437

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R +  +  M + E+  + + +
Sbjct: 438 RDRDSMEQVRMPISELEAFLTEK 460


>gi|328467647|gb|EGF38702.1| histidyl-tRNA synthetase [Lactobacillus helveticus MTCC 5463]
          Length = 428

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 69/424 (16%), Positives = 133/424 (31%), Gaps = 20/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    +   V    R   NR    E+  P+ ++ +++  S     +   K+M  
Sbjct: 8   GTVDILPEQSGSWQKVEETARNFFNRANYREIRTPSFENYEIFSRSSGDSSEIVEKQMYD 67

Query: 96  LADRNDKAMIYGPTHEEV--MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P          +           PF  + ++  FR E        R R
Sbjct: 68  FNDKGGRHIALRPEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF  +   +      M           +Y    + LG + +        +  
Sbjct: 125 EFHQIGVESFGSSNPLADVQTIMMGHDLLGELGVKNYQLHINTLGDEQVRKGYHDALVNY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVH 263
               +  +  D+           +D     +     D   +   ++    A + +   + 
Sbjct: 185 FTPVKDKLSEDSQRRLRDNPLRILDSKDDRDKKFLPDAPKIRDFLDDNSKANFESILKML 244

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           ++   D + ++  V       G IF F     SL  SAT     G+  ++     G    
Sbjct: 245 DQLGIDYVIDDDLVRGLDYYTGVIFEFMVEDKSLWESATTILGGGRYDHLVEEFNGPETP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E             +   +     I    +       +I   L K G +  +D
Sbjct: 305 AVGFGIGEERLMLVLEKQNPELFKNEGIDFFITNIGEGTAQKAIEIARSLRKQGFEADFD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV--INYASH 440
              +++  QF  AD  G    + +G K +++  + IK    G   D+SLE++  +N    
Sbjct: 365 VNQKKLKGQFKKADREGAKYVITLGEKELANGVLNIKRLADGKTIDLSLEDINDMNKVMK 424

Query: 441 RFSN 444
              +
Sbjct: 425 ELKD 428


>gi|301109960|ref|XP_002904060.1| glycyl-tRNA synthetase [Phytophthora infestans T30-4]
 gi|262096186|gb|EEY54238.1| glycyl-tRNA synthetase [Phytophthora infestans T30-4]
          Length = 487

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/432 (13%), Positives = 141/432 (32%), Gaps = 44/432 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG     NV      E  Q R   + +    L ++ +W  SG  D++   M   +
Sbjct: 53  FDYGPLGVLMKKNVIDRWWFEFVQKRPNCVGLDSAVLLNSAVWTASGHVDNFTDPMTVCS 112

Query: 98  DRN---------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             +         +  +      + V T                          +    F 
Sbjct: 113 SCHSRVRVDQLLESKLETQEEVDAVATLSLSQMDDLLTEHNVACPNCGKTDSFQPAKTFN 172

Query: 149 VMRSREF--LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-------LGLKSIPMRAES 199
           ++         +      L PE ++ +Y         +  +       +G       +  
Sbjct: 173 LLFRTNMGATDETCDWIYLRPETAQGAYINFANVQSTMRKKLPFGIGQVGKSFRNEISPG 232

Query: 200 GPIGGDLSHE------FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
             +      E      F    ++ +  ++      DF         +++       E+  
Sbjct: 233 HFLFRTREFEQLELQFFTHPNESDDWYLYWVDQCYDFLTK-YGIKPENLRKHEHAPEELA 291

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYV 312
               AT+D+  +  F    E   ++ R              +   S T++     ++   
Sbjct: 292 HYARATTDIQFKYPF-GWSELWGIANRTSYDLKKH----MDASGKSLTYQDLVAKEEFLP 346

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGII--------WPDSVAPFKISLINIKAHDQVCRDA 364
            +    +GA RV+ +++  ++D + +             +AP++ +++ +    +   D 
Sbjct: 347 HVIEPALGAGRVMLSMLLDAYDEEEVNGRERTVLRLHPDIAPYRFAVLPLVKK-EPLLDV 405

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K++  L      V +D  G  IG ++   D +G P+ + V    + D  V ++ R + 
Sbjct: 406 AQKLFEDLCGS-ASVDYDVTG-SIGRRYRRQDEIGTPMCLTVDFDTLEDKCVTVRDRDSM 463

Query: 425 IREDMSLEEVIN 436
            ++ + +E+++ 
Sbjct: 464 EQKRVPIEQILQ 475


>gi|329934676|ref|ZP_08284717.1| glycyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
 gi|329305498|gb|EGG49354.1| glycyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
          Length = 460

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/432 (13%), Positives = 125/432 (28%), Gaps = 36/432 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    + + ++WV SG   ++   +    
Sbjct: 33  WDYGPLGVELKENIKRQWWRYMVTSREDVVGLDSSVILATEVWVASGHVATFTDPLTECT 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +        EE   +       +                 E +   G++ +     
Sbjct: 93  SCHKR--FRADHLEEAYEEKKGHAPANGLADLNCPNCGNKGTFTEPKQFSGLLSTHLGPT 150

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------LGLKSIPMRAESGPIGG----- 204
           +D+ S       +       F    +   R        +G            I       
Sbjct: 151 QDSGSVAYLRPETAQGIFTNFGQVQQTSRRKPPFGIAQMGKSFRNEITPGNFIFRTREFE 210

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +  EF V     E       +             +++       E+ +     T+D+  
Sbjct: 211 QMEMEFFVKPGEDEKWQEYWMEQRWNWYRGLGLSEENMRWYEHPKEKLSHYSKRTADIEY 270

Query: 265 EKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F      E + V+ R           +K S    + F    G+     +     G  
Sbjct: 271 RFQFGGSEWGELEGVANRTDYDLSAH---SKASGQDLSYFDQEAGERWTPYVIEPAAGVG 327

Query: 323 RVVAAVI--ESSHDGKGIIWPDSVAPFKISLIN----------IKAHDQVCRDACEKIYA 370
           R + A +      D              + L              + +       + +  
Sbjct: 328 RTMLAFLLDAYVEDEAPNAKGKMEKRTVLRLDPRLAPVKVAVLPLSRNPELSPKAKGLAQ 387

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R +  +E +S
Sbjct: 388 ALRQNW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAVTVRERDSMKQERVS 445

Query: 431 LEEVINYASHRF 442
           L+++  Y   R 
Sbjct: 446 LDQIEGYLGSRL 457


>gi|125973827|ref|YP_001037737.1| glycyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|256004278|ref|ZP_05429260.1| glycyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281417986|ref|ZP_06249006.1| glycyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|254781878|sp|A3DF15|SYG_CLOTH RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|125714052|gb|ABN52544.1| glycyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|255991712|gb|EEU01812.1| glycyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281409388|gb|EFB39646.1| glycyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|316939978|gb|ADU74012.1| glycyl-tRNA synthetase [Clostridium thermocellum DSM 1313]
          Length = 462

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/439 (14%), Positives = 137/439 (31%), Gaps = 46/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE--MSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +       +    L +  +WV SG    +   ++   
Sbjct: 34  WDYGPLGVELKNNIKKAWWKKFVQENPYNVGVDCAILMNPQVWVASGHVGGFSDPLIDCK 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +   +        E  + +     +  + N     Y  +                R+F +
Sbjct: 94  ECKTRHRADKMIEEWNLKNNENVKVDGWSNEMLMNYIREKGVTCPECGGKNFTDIRKFNL 153

Query: 158 KDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRAESG 200
                  +T +     Y                             ++G           
Sbjct: 154 MFKTFQGVTEDSKSEIYLRPETAQGIFVNFKNVQRTTRKKIPFGIGQIGKSFRNEITPGN 213

Query: 201 PIGGDLSH-----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            I           EF     T        K+F    + S N   +++   +   E+ +  
Sbjct: 214 FIFRTREFEQMELEFFCEPGTDLEWFEYWKNFCFNWLLSLNIKKENLRMRDHSKEELSHY 273

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQ 313
             AT+D+         P        GI     F       +S    + F     + +   
Sbjct: 274 SNATTDI-----EYLFPFGWGELW-GIADRTDFDLRQHAEHSKEDLSYFDPNTNRKYIPY 327

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDA 364
                +GA RV    +  ++D + +          +  ++AP KI+++ +        D 
Sbjct: 328 CIEPSLGADRVALVFLCDAYDEEEVEEGDIRVVLRFHPAIAPVKIAVLPLSKK---LGDE 384

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             KIY  L K   +  +D+ G  IG ++   D +G P  V      ++D  V ++ R + 
Sbjct: 385 AYKIYEMLIKK-YNCEYDETG-SIGKRYRRQDEIGTPYCVTFDFDSLNDRCVTVRDRDSM 442

Query: 425 IREDMSLEEVINYASHRFS 443
            +  + ++E+++Y   +F 
Sbjct: 443 QQVRIKIDELLSYFEGKFD 461


>gi|315427010|dbj|BAJ48627.1| glycyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
          Length = 481

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/483 (13%), Positives = 142/483 (29%), Gaps = 74/483 (15%)

Query: 24  KLMLRTGMIHQHS-------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV---PT 73
           KL L  G     +        G + +  LG                R    EM +     
Sbjct: 7   KLGLERGFFFPSAEIYAGSPAGFWEYGHLGALLKRKFIDAWHRLMVRRD--EMLLVDGSQ 64

Query: 74  LQSADLWVESGRYDSYGKEMLRLA---------------------DRNDKAMIYGPTHEE 112
           +    ++V SG   ++   + R                       +R     I     E 
Sbjct: 65  ILPKPVFVASGHLATFADPITRCKSCKSVYRIDRLLEEKLGIKVPERTPPEQIDEIIAEH 124

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL---------------- 156
                         +L    + + L    +            F+                
Sbjct: 125 GFRCPACGGELDKVSLFNMMFGVSLGASGDEGYLRPETCQNIFIDFPRVYKISRRKLPLA 184

Query: 157 -------MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSH 208
                   ++  S   +    +         +               A+    +      
Sbjct: 185 LAQVGKSFRNEISPRQSLIRLREFTQAEIEVFFNPRTANEFAKAKTVADKELNMWVGERV 244

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFD-----DIISLNSIVEQWTAPYAATSDVH 263
           E I      E+ +  S     +    ++  F      D +    + +   A YAA  +  
Sbjct: 245 EKITCERAVESGLVSSWLVAYYLWLVQDFYFRLGIGSDRLRFRRLGDDEKAFYAA--EAW 302

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           + ++  S    + V+         +  G    +         DG+     +    +G  R
Sbjct: 303 DLEVLTSTGWVELVACNNR---TDYDLGGHQRVSGVDLRVTEDGESFLPHVFELSMGVDR 359

Query: 324 VVAAVIESSHDGKGIIW----PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            + A++E  +  +          ++AP+ I++  +    +      +++Y +L ++  D 
Sbjct: 360 SLLALLEHGYVQENGRSVLRLHPALAPYTIAVFPLLDRPE-LTQVAQQLYNKL-QLDFDT 417

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           F+D+ G  IG ++   D +G P  + V  + + D+ V ++ R T  +E +++E + +Y S
Sbjct: 418 FYDEKG-SIGRRYRRQDEIGTPFCITVDYQTLEDNTVTVRDRDTMKQERVNIEVLKSYIS 476

Query: 440 HRF 442
            + 
Sbjct: 477 DKL 479


>gi|149183345|ref|ZP_01861783.1| glycyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148848942|gb|EDL63154.1| glycyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 455

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/441 (14%), Positives = 131/441 (29%), Gaps = 51/441 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     + +    L +   WV SG   ++   M    
Sbjct: 28  WDYGPLGVELKNNIKKAWWKKFIQESPYNVGLDASILMNPQTWVASGHVGNFNDPM---I 84

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE--- 154
           D  +    +            +        LPF      +   +   P  G     E   
Sbjct: 85  DCKNCKTRHRADKIIENALDEKGVEMIVDGLPFERMAEIMDEYEIACPSCGSREFTEIRQ 144

Query: 155 FLMKDAYSFDLTPEGSKHSYNK-----------------MFVSYLRIFHRLGLKSIPMRA 197
           F +       +T   +   + +                 M         ++G        
Sbjct: 145 FNLMFKTHQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKVPFGIGQIGKSFRNEIT 204

Query: 198 ESGPIGGDLSHEFIV---LADTGETQVFCSKDFMDFPIPSENT--DFDDIISLNSIVEQW 252
                      E +        GE  +     + +F      T    +D + L    +  
Sbjct: 205 PGNFTFRTREFEQMELEFFCKPGE-DLEWHSYWREFCKNWLLTLGMKEDNMRLRDHDDDE 263

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDH 310
            + Y+  +     K      E   +S R       F              +      +  
Sbjct: 264 LSHYSNATTDIEYKFPFGWGELWGISDR-----TDFDLKRHMEHSNEDFHYMDPQTNEKF 318

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGII--------WPDSVAPFKISLINIKAHDQVCR 362
                   +GA RV  A +  +++ + +         +  ++APFK +++ +        
Sbjct: 319 VPYCIEPSLGADRVTLAYLCDAYEEEELENEKRTVLRFHPALAPFKAAVLPLSKK---LS 375

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   K+Y  LSK    V +D+    IG ++   D +G P  +      V D +V ++ R 
Sbjct: 376 DEAFKVYEELSK-DLMVDFDET-ASIGKRYRRQDEIGTPFCITFDFDSVEDGQVTVRDRD 433

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +  M + EV N+   +  
Sbjct: 434 TMDQVRMPISEVKNFLEEKIQ 454


>gi|152967313|ref|YP_001363097.1| glycyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
 gi|151361830|gb|ABS04833.1| glycyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
          Length = 462

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/434 (13%), Positives = 128/434 (29%), Gaps = 40/434 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           + + PLG +  +N+      +   +R   + +    +    +W  SG  + +   ++   
Sbjct: 35  WDYGPLGVELKENIKRQWWRQMVSSRDDVVGLDSSVILPRRVWEASGHVEVFSDPLVESL 94

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  +A      +E        + +    +              E R   G+M++   
Sbjct: 95  QTHKRYRADHLLEAYEAKHGHPPVNGLADVPDPETGVRGQWT----EPRDFSGLMKTYLG 150

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG--- 204
            + +          +       F + +    +         G            I     
Sbjct: 151 AVDNEEGLHYLRPETAQGIFVNFANVMGSARKKPPFGIGQIGKSFRNEITPGNFIFRTRE 210

Query: 205 --DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
              +  EF V   T E       D           D  ++       E+ +     T D+
Sbjct: 211 FEQMEMEFFVEPGTDEQWHQYWLDERMSWYTGLGIDAGNLRFFEHPQEKLSHYSKRTVDI 270

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGA-DGKDHYVQMGSYGIG 320
                F      +     GI     +   T      +  ++     G+     +     G
Sbjct: 271 EYRFGFQGSEWGELE---GIANRTDYDLSTHSRESGVDLSYFDQTKGERWIPYVIEPAAG 327

Query: 321 AMRVVAAVIESSH------------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
             R + A +  ++            D + ++  D       + +   + ++        +
Sbjct: 328 LTRSLMAFLVDAYTEDEAPNTKGGVDKRTVLRLDHRLAPVKAAVFPLSRNEQLSPKARDL 387

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A L +   +V +DD G  IG ++   D +G P  + V    + D  V I+ R T  +E 
Sbjct: 388 AAELRRNW-NVEFDDAGA-IGRRYRRHDEVGTPYCITVDFDTLEDEAVTIRERDTMAQER 445

Query: 429 MSLEEVINYASHRF 442
           + L +V ++   R 
Sbjct: 446 VGLTQVTSWLGARL 459


>gi|83815951|ref|YP_444974.1| histidyl-tRNA synthetase [Salinibacter ruber DSM 13855]
 gi|83757345|gb|ABC45458.1| histidyl-tRNA synthetase [Salinibacter ruber DSM 13855]
          Length = 435

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 132/437 (30%), Gaps = 50/437 (11%)

Query: 38  GIYSWLPL------GQKA-----LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           G +  LP       G +        +V A +R+   R    E+  P L+  +L       
Sbjct: 10  GTFDILPDAYTDDGGTRVAASAEWRHVEATVRDVMRRHNFEEIRTPVLEPTELVARGVGE 69

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D   KEM    +R+D   +  P     +   F  H    R      + I   FR E  
Sbjct: 70  STDIVQKEMF-AFERSDTQYVLRPEITAPVVRSFLQHHLDQRGGVQKLFYIGPCFRAEQP 128

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
            +    R R+F              +           + +   LGL  + +R  +     
Sbjct: 129 QKG---RYRQFHQFGIEVLGADQPRADAE---TIAVLMAVCEALGLSDLRLRLNTLGTPE 182

Query: 205 DLSHEFIVLADT-----GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                   L D       E      +     P+   +T  +   +L           +  
Sbjct: 183 RREEYVAALQDYLAPHADELSETSRRRLEQNPLRILDTKVEHEQALLRDAPTLIDFVSDE 242

Query: 260 SDVHNEKLFDSLPE------NKRVSARGIEV--GHIFYF-----GTKYSLPMSATFK--- 303
           S  H +++   L +            RG++      F       G + +L     +    
Sbjct: 243 SLAHYDEVKRLLGDLGVEYDEDPHLVRGLDYYTETTFELEHPGLGAQSALAGGGRYDRLA 302

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              G D  V    +  G  R+  A+  +  D  G   P          + I A       
Sbjct: 303 EVLGSDDPVPAVGFAAGMERLFLALDAAEADRPGADTP---------DVFIAALGDEAEA 353

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C +    L   G  V  D MG  + +Q   A+    P  +I+G   +      +K   +
Sbjct: 354 WCFRTAQELRAGGLHVAHDLMGRSLKAQMKEANRQNAPYAMIIGGNELEAGAATVKEMES 413

Query: 424 GIREDMSLEEVINYASH 440
           G +ED+  ++++ Y + 
Sbjct: 414 GEQEDVPFDDLVEYLTS 430


>gi|82751168|ref|YP_416909.1| glycyl-tRNA synthetase [Staphylococcus aureus RF122]
 gi|123768505|sp|Q2YT14|SYG_STAAB RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|82656699|emb|CAI81126.1| glycyl-tRNA synthetase [Staphylococcus aureus RF122]
          Length = 463

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 61/443 (13%), Positives = 139/443 (31%), Gaps = 55/443 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN-----RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +NV     ++         G   +    L +  +W  SG  +++   M+
Sbjct: 32  WDYGPLGVELKNNVKKAWWQKFITQSPFNIG---IDAAILMNPKVWEASGHLNNFNDPMI 88

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D +          E+ M D+          L F   +  +     + P        E
Sbjct: 89  DNKD-SKIRYRADKLIEDYMQDVKGDENFIADGLSFEQMKKIIDDEGIVCPVSKTANWTE 147

Query: 155 ---FLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFH-----------------RL 188
              F +       +T + +   +        +FV+Y  +                   R 
Sbjct: 148 IRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRN 207

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +        +          F    +  E Q +      D+          + + L   
Sbjct: 208 EITPGNFIFRTREFEQMELEFFCKPGEEIEWQNYWKTFASDWLT--SLNMSSENMRLRDH 265

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   + Y+  +     K      E   +++R            ++S            +
Sbjct: 266 DEDELSHYSNATTDIEYKFPFGWGELWGIASRTDFDLRKH---AEHSGEDFRYHDPETNE 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHD----------GKGIIWPDSVAPFKISLINIKAHD 358
            +        +GA RV  A +  ++D             + +  ++AP+K +++ +    
Sbjct: 323 KYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKK- 381

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   KI+ +LS     + +D+  + IG ++   D +G P  V      + D++V +
Sbjct: 382 --LSGEAIKIFEQLSSK-FSIDFDES-QSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTV 437

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R +  +  M + E+  + + +
Sbjct: 438 RDRDSMEQVRMPISELEAFLTEK 460


>gi|328882342|emb|CCA55581.1| Glycyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 459

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/435 (12%), Positives = 124/435 (28%), Gaps = 43/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+           R   + +    + + ++W  SG   ++   +    
Sbjct: 33  WDYGPLGVELKENLKRQWWRYMVTAREDVVGIDSSVILATEVWEASGHVATFTDPLTECT 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +        E    +     +                   E +   G++ +     
Sbjct: 93  SCHKR-YRADHLEEA--YEEKHGRLPESLTDLNCPNCGNKGTFTEPKQFSGLLSTHLGPT 149

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------LGLKSIPMRAESGPIGG----- 204
           +D+ S       +       F        +        +G            I       
Sbjct: 150 QDSGSVAYLRPETAQGIFTNFAQVQTTSRKKPPFGIAQMGKSFRNEITPGNFIFRTREFE 209

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +  EF V     E       +             +++       E+ +     T+D+  
Sbjct: 210 QMEMEFFVKPGEDEQWQEYWMEQRWNWYTGLGLREENMRWFEHPKEKLSHYSKRTADIEY 269

Query: 265 EKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F      E + V+ R            K S    +  +   G+ +   +     G  
Sbjct: 270 RFSFGGSEWGELEGVANRTDYDLSAH---AKASGANLSFLEQESGERYTPYVIEPAAGVG 326

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK---------------AHDQVCRDACEK 367
           R + A +    D        +          ++               + +       + 
Sbjct: 327 RAMLAFLL---DAYIEDEAPNAKGVMEKRTVLRLDHRLAPVKVAVLPLSRNPQLSPKAKG 383

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R T  +E
Sbjct: 384 LAADLRQNW-NIEFDDAGA-IGRRYRRQDEIGTPYCVTVDFDTLDDNAVTVRERDTMKQE 441

Query: 428 DMSLEEVINYASHRF 442
            +SL+++ +Y   R 
Sbjct: 442 RVSLDQIQSYLGSRL 456


>gi|260655129|ref|ZP_05860617.1| proline--tRNA ligase [Jonquetella anthropi E3_33 E1]
 gi|260630051|gb|EEX48245.1| proline--tRNA ligase [Jonquetella anthropi E3_33 E1]
          Length = 478

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 147/423 (34%), Gaps = 72/423 (17%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +          TG      P L  A  L  E+   + +  E   +
Sbjct: 33  GCMVIRPTGYALWEEIQQKFDAAFKETGHTNAYFPVLIPASFLTKEAEHVEGFAPECAVV 92

Query: 97  AD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
            +    + ++ +I  PT E V+  ++   I+S+R+LP    Q     R E RPR   +R+
Sbjct: 93  TEAGGEKLEEPLIVRPTSETVIGYMYSKWIQSWRDLPLLINQWANVMRWEKRPRL-FLRT 151

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            EFL ++ ++   T E +     +M                                   
Sbjct: 152 SEFLWQEGHTAHATSEEAVQETERML---------------------------------- 177

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                  +V+      D  +P        +  + S  E++              L     
Sbjct: 178 -------EVYRRIMTDDLALPV-------VEGVKSAGERFPG-----------ALETYTC 212

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   + G  +S   +  F+  D    Y    S+G+ + R++ AVI + 
Sbjct: 213 ETMVSDTKAVQAGTSHFLGQNFSKAFNIQFQAQDETMQYAWTTSWGV-STRLIGAVIMTH 271

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSK-VGCD-VFWDDMG-E 386
            D  G+I P  VAP K  +I I   +   ++      ++   L+K +G   V  D+    
Sbjct: 272 SDADGLIIPPHVAPVKAVVIPISKDEAKSKELAGKAAELAQSLNKVLGGRFVKVDEQFYM 331

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +   +F      G PL++ +G K  +   V +  R TG + D +  E+           +
Sbjct: 332 RPSDRFFYHLQKGVPLRIELGEKDDAAGTVRLVRRDTGEKLDAAQGELTTVVPQLLEEIQ 391

Query: 447 PVL 449
             L
Sbjct: 392 HNL 394


>gi|297199539|ref|ZP_06916936.1| glycyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197713535|gb|EDY57569.1| glycyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 460

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/435 (12%), Positives = 125/435 (28%), Gaps = 42/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    + + ++WV SG   ++   +    
Sbjct: 33  WDYGPLGVELKENLKRQWWRYMVTSREDVVGLDSSVILAPEVWVASGHVATFTDPLTECT 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +        E           ++                 E +   G++ +     
Sbjct: 93  SCHKR-FRADHLEEAYEAK-KGHAPENGLADVNCPNCGNKGQFTEPKQFSGLLSTHLGPT 150

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------LGLKSIPMRAESGPIGG----- 204
           +D+ S       +       F        +        +G            I       
Sbjct: 151 QDSGSVAYLRPETAQGIFTNFAQVQVASRKKPPFGIAQMGKSFRNEITPGNFIFRTREFE 210

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +  EF V     E       +             +++   +   E+ +     T+D+  
Sbjct: 211 QMEMEFFVKPGEDEKWQEYWMEQRWNWYTGLGLREENMRWYDHPAEKLSHYSKRTADIEY 270

Query: 265 EKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F      E + V+ R           +K S      +    G+     +     G  
Sbjct: 271 RFQFGGNEWGELEGVANRTDYDLTAH---SKASGQDLFFYDQEAGERWTPYVIEPAAGVG 327

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK---------------AHDQVCRDACEK 367
           R + A +    D        +          ++               + +       + 
Sbjct: 328 RAMLAFLL---DAYVEDEAPNAKGKLEKRTVLRLDHRLAPVKVAVLPLSRNAELSPKAKG 384

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R +  +E
Sbjct: 385 LAQALRQNW-NIEFDDAGA-IGRRYRRQDEIGTPYCVTVDFDTLDDNAVTVRERDSMKQE 442

Query: 428 DMSLEEVINYASHRF 442
            +SL+++  Y + R 
Sbjct: 443 RVSLDQIEGYLAARL 457


>gi|119495835|ref|XP_001264694.1| prolyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
 gi|119412856|gb|EAW22797.1| prolyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
          Length = 441

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 95/195 (48%), Gaps = 17/195 (8%)

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK---------GADGKDHYV 312
           V +        +    +   +E+GH F+ GT+YS  + A+            +  +   +
Sbjct: 249 VQDGDKCTKCAKGSLKTHTAVELGHTFHLGTRYSEVLQASVMVDRSLSGGSQSKDQLVPL 308

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           QMG +GIG  R+++AV +S  D KG+ WP ++AP+++ ++  K  +       EK+Y  L
Sbjct: 309 QMGCHGIGVSRMISAVADSLADSKGLNWPRAMAPYEVVVVPGKGLETE----AEKVYDSL 364

Query: 373 SKVG---CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIRED 428
                   D   DD  + +G +   ADL+G+P+ V+VG  +     +E++ R    +RED
Sbjct: 365 VSNHTSSIDAILDDRDKPMGWKLGDADLIGYPVIVVVGKGWKKAQTLEVQCRRLDNLRED 424

Query: 429 MSLEEVINYASHRFS 443
           + L+++ ++      
Sbjct: 425 VPLDQLPSFVQSLLE 439


>gi|229076032|ref|ZP_04209003.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock4-18]
 gi|228707066|gb|EEL59268.1| Histidyl-tRNA synthetase 2 [Bacillus cereus Rock4-18]
          Length = 476

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 124/414 (29%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 66  LPGTVELWQYIEGQAREICRRYNYKEIRTPIFEHTELFLRGVGDTTDIVQKEMYSFQDRG 125

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +   +  + +      P   Y I   FR E        R R+F+   
Sbjct: 126 ERSLTLRPEGTAPVVRSYVENKMFGDATQPTKLYYIGQMFRYERPQAG---RYRQFVQFG 182

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT 216
                   P             Y  +  +     +    +  S     D           
Sbjct: 183 IEAIGSNDPAIDAEVIALAVEFYRGMGLKNIKVVLNSLGDAASRQAHRDALIA-HFEPRI 241

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
           GE    C       P+   +   D    L       T      S V+ +K+ + L     
Sbjct: 242 GEFCSDCQSRLEKNPLRILDCKKDRNHELMGTAPSITEYLNEDSAVYYDKVQELLTMMDV 301

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               +   V         +F   ++     + T     G+ + +     G     +  A+
Sbjct: 302 PFEKDPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAM 361

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +         + A  +  +D   K+   L K G  V  D +  ++
Sbjct: 362 SIERLIMALKAENIELPIEHSIDCYVVALGEKAKDHAAKVAFDLRKAGLLVEKDYLDRKM 421

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +QF  AD L      ++G   +    + +K   TG +E+++L+   +Y + + 
Sbjct: 422 KAQFKSADRLNAKFVAVLGEDELDKGIINLKDMATGGQEEVALDVFASYVAEKL 475


>gi|255293004|dbj|BAH90101.1| glycyl-tRNA synthetase [uncultured bacterium]
          Length = 492

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/435 (12%), Positives = 123/435 (28%), Gaps = 38/435 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + P G +  +N+           R   + +    +  + +W  SG   ++     E  
Sbjct: 61  WDYGPYGVELKENIKRQWWRSMVTGRDDVVGLDSSVILPSRVWEASGHLKAFVDPLIECK 120

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP--------- 145
               R  +  +     E+   D   +   +    P    + Q     +            
Sbjct: 121 SCHKRFREDHLQEEYAEKKGIDNPDTVDTALIACPNCGAKEQWSEPRQFNGLLKTFLGPV 180

Query: 146 --RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G+   R    +  +        +        +  +    R  +        +    
Sbjct: 181 EDESGLHYLRPETAQGIFVNFANVMTTARMKPPFGIGQVGKSFRNEITPGNFIFRTREFE 240

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                 F+      E         +D+ +     D D++       E+ +     T D+ 
Sbjct: 241 QMELEFFVKPGSDEEWHQHWIDARVDWYV-DLGIDRDNLRLYEHPQEKLSHYSKRTVDIE 299

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYF---GTKYSLPMSATFKGAD-GKDHYVQMGSYGI 319
               F      +     GI     F     G          +      +     +     
Sbjct: 300 YRFRFQGSEWGELE---GIANRTDFDLSTHGEHSGKEKQMQYFDQQANERWTPYVIEPSA 356

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKI------SLINIK------AHDQVCRDACEK 367
           G  R + A +  ++  +           +        L  +K      + ++      + 
Sbjct: 357 GLTRSLMAFMVDTYAEEEAPNAKGGTDIRTVLKLDKRLAPVKVAVLPLSRNEQLSPKAKD 416

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A L K   +V +DD    IG ++   D +G P  + V  + + D  V I+ R T  +E
Sbjct: 417 LAAALRKNW-NVDFDDAQA-IGRRYRRQDEIGTPYCITVDFETLEDQAVTIRDRDTMAQE 474

Query: 428 DMSLEEVINYASHRF 442
            ++L++V  Y + R 
Sbjct: 475 RVALDQVEGYLAQRL 489


>gi|15668403|ref|NP_247199.1| glycyl-tRNA synthetase [Methanocaldococcus jannaschii DSM 2661]
 gi|2500998|sp|Q57681|SYG_METJA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|1499005|gb|AAB98213.1| glycyl-tRNA synthetase (glyS) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 577

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 90/281 (32%), Gaps = 11/281 (3%)

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                 Y            R G       A+               +    +      + 
Sbjct: 304 PNEMAHYAIDCWDAEIYTERFGWIECVGIADRTDYDLRSH---SAHSGVELSVFVELDEE 360

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            +      N ++  +  +     +    Y        ++ F    EN       I+ G  
Sbjct: 361 REIETYEINLNYKVVGKIFKKDTKAIEAYINNLSEKEKEEFVKNIENDGKVIINID-GKE 419

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH----DGKGIIWPDS 343
           F    K  + +    K   G+     +     G  R+   ++E S+    D   +    S
Sbjct: 420 FEI-LKDYVEIKKVKKVIKGEKVIPHVIEPSYGIDRITYCLLEHSYREEEDRVYLDLKPS 478

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP K  ++ +   D       ++I   L + G    +DD G  IG ++  AD +G P  
Sbjct: 479 IAPIKAYVLPLVNKDD-MPKIAKEIEQMLRENGIIAEYDDSGA-IGRRYMRADEIGVPFC 536

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + V  + + D  V ++ R T  +  + ++E+++Y   R   
Sbjct: 537 ITVDGQTLEDRTVTVRERNTREQVRVKIDELVDYLKERLKE 577



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 1/107 (0%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G   + PLG    +N+ +  RE+   + G  E+  PT+   ++   SG  D++   ++ 
Sbjct: 30  AGFVDYGPLGCLLKNNIISKFREQYIIKEGFYEIESPTVTPYEVLKASGHVDNFTDPIVE 89

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
             +  +         E V  D     +K    L         K   E
Sbjct: 90  CKNCLESFRADHLIEEFVDVDTEGKTLKELDELIRKHNIRCPKCGGE 136


>gi|302385328|ref|YP_003821150.1| glycyl-tRNA synthetase [Clostridium saccharolyticum WM1]
 gi|302195956|gb|ADL03527.1| glycyl-tRNA synthetase [Clostridium saccharolyticum WM1]
          Length = 462

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/445 (15%), Positives = 140/445 (31%), Gaps = 56/445 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L ++  W+ SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKKAWWQKF----VQESPYNVGVDCAILMNSQTWIASGHLGGFSDPL 87

Query: 94  LRLADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           +      ++     +I     E  +T        S   +     +  +        +   
Sbjct: 88  MDCKACKERFRADKLIEDYMAENNLTVEGSVDAWSQEEMKNYIDEKNICCP--SCGKHDF 145

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
              R+F +       +T +     Y        +FV++  +      K     A+ G   
Sbjct: 146 TDIRQFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIAQVGKSF 205

Query: 204 GDLSH----------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
            +                   EF    +T        K+F    + +     D++   + 
Sbjct: 206 RNEITPGNFTFRTREFEQMELEFFCEPETDLEWFAYWKEFCINWLKTLGIKDDEMRVRDH 265

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             E+ +  Y+  +            E   ++ R              S      F     
Sbjct: 266 EKEELS-FYSKATSDIEFLFPFGWGELWGIADRTDYDLTQHQ---NTSGQDLTYFDDEKK 321

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHD 358
           + +   +    +GA RV  A + +++D + I          +  ++AP KI ++ +    
Sbjct: 322 ERYVPYVVEPSLGADRVTLAFLCAAYDEEEIAEGDVRTVLHFHPAIAPVKIGVLPLSKK- 380

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  EK+Y  L K   +  +DD G  IG ++   D +G P  V        D  V +
Sbjct: 381 --LNDGAEKVYEELCKY-YNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFDSEEDFAVTV 436

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +  + + E+ +Y   +F 
Sbjct: 437 RDRDTMDQVRVPIAELKSYFEDKFR 461


>gi|149191774|ref|ZP_01870012.1| threonyl-tRNA synthetase [Vibrio shilonii AK1]
 gi|148834354|gb|EDL51353.1| threonyl-tRNA synthetase [Vibrio shilonii AK1]
          Length = 146

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 9/148 (6%)

Query: 301 TFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           T+   + +     M    I     R +  +IE              A             
Sbjct: 1   TYVDENNERQVPVMIHRAILGSLERFIGILIEEYAGFFPTWLSPEQAVIMNIT------- 53

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  +++  +L K G     D   E+IG +     L   P  ++ G + +   ++ +
Sbjct: 54  DKQSDYVQEVTQKLQKSGIRAKADLRNEKIGFKIREHTLKRIPYMLVCGDQEMEAGEIAV 113

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNR 446
           + R         +++ I+Y     S+ +
Sbjct: 114 RTRKGKDLGKFKVDDFISYIQAEVSSRK 141


>gi|315427003|dbj|BAJ48621.1| glycyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
 gi|315428091|dbj|BAJ49678.1| glycyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
          Length = 482

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 64/483 (13%), Positives = 142/483 (29%), Gaps = 74/483 (15%)

Query: 24  KLMLRTGMIHQHS-------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV---PT 73
           KL L  G     +        G + +  LG                R    EM +     
Sbjct: 8   KLGLERGFFFPSAEIYAGSPAGFWEYGHLGALLKRKFIDAWHRLMVRRD--EMLLVDGSQ 65

Query: 74  LQSADLWVESGRYDSYGKEMLRLA---------------------DRNDKAMIYGPTHEE 112
           +    ++V SG   ++   + R                       +R     I     E 
Sbjct: 66  ILPKPVFVASGHLATFADPITRCKSCKSVYRIDRLLEEKLGIKVPERTPPEQIDEIIAEH 125

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL---------------- 156
                         +L    + + L    +            F+                
Sbjct: 126 GFRCPACGGELDKVSLFNMMFGVSLGASGDEGYLRPETCQNIFIDFPRVYKISRRKLPLA 185

Query: 157 -------MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSH 208
                   ++  S   +    +         +               A+    +      
Sbjct: 186 LAQVGKSFRNEISPRQSLIRLREFTQAEIEVFFNPRTANEFAKAKTVADKELNMWVGERV 245

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFD-----DIISLNSIVEQWTAPYAATSDVH 263
           E I      E+ +  S     +    ++  F      D +    + +   A YAA  +  
Sbjct: 246 EKITCERAVESGLVSSWLVAYYLWLVQDFYFRLGIGSDRLRFRRLGDDEKAFYAA--EAW 303

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           + ++  S    + V+         +  G    +         DG+     +    +G  R
Sbjct: 304 DLEVLTSTGWVELVACNNR---TDYDLGGHQRVSGVDLRVTEDGESFLPHVFELSMGVDR 360

Query: 324 VVAAVIESSHDGKGIIW----PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            + A++E  +  +          ++AP+ I++  +    +      +++Y +L ++  D 
Sbjct: 361 SLLALLEHGYVQENGRSVLRLHPALAPYTIAVFPLLDRPE-LTQVAQQLYNKL-QLDFDT 418

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           F+D+ G  IG ++   D +G P  + V  + + D+ V ++ R T  +E +++E + +Y S
Sbjct: 419 FYDEKG-SIGRRYRRQDEIGTPFCITVDYQTLEDNTVTVRDRDTMKQERVNIEVLKSYIS 477

Query: 440 HRF 442
            + 
Sbjct: 478 DKL 480


>gi|294506836|ref|YP_003570894.1| Histidyl-tRNA synthetase [Salinibacter ruber M8]
 gi|294343164|emb|CBH23942.1| Histidyl-tRNA synthetase [Salinibacter ruber M8]
          Length = 437

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 75/437 (17%), Positives = 132/437 (30%), Gaps = 50/437 (11%)

Query: 38  GIYSWLPL------GQKA-----LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           G +  LP       G +        +V A +R+   R    E+  P L+  +L       
Sbjct: 12  GTFDILPDAYTDDGGTRVAASAEWRHVEATVRDVMRRHNFEEIRTPVLEPTELVARGVGE 71

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D   KEM    +R+D   +  P     +   F  H    R      + I   FR E  
Sbjct: 72  STDIVQKEMF-AFERSDTQYVLRPEITAPVVRSFLQHHLDQRGGVQKLFYIGPCFRAEQP 130

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
            +    R R+F              +           + +   LGL  + +R  +     
Sbjct: 131 QKG---RYRQFHQFGIEVLGADQPRADAE---TIAVLMAVCEALGLSDLRLRLNTLGTPE 184

Query: 205 DLSHEFIVLADT-----GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                   L D       E      +     P+   +T  +   +L           +  
Sbjct: 185 RREEYVAALQDYLAPHADELSETSRRRLEQNPLRILDTKVEHEQALLRDAPTLIDFVSDE 244

Query: 260 SDVHNEKLFDSLPE------NKRVSARGIEV--GHIFYF-----GTKYSLPMSATFK--- 303
           S  H +++   L +            RG++      F       G + +L     +    
Sbjct: 245 SLAHYDEVKGLLGDLGVEYDEDPHLVRGLDYYTETTFELEHPGLGAQSALAGGGRYDRLA 304

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
              G D  V    +  G  R+  A+  +  D  G   P          + I A       
Sbjct: 305 EVLGSDDPVPAVGFAAGMERLFLALDAAEADRPGAATP---------DVFIAALGDEAEA 355

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C +    L   G  V  D MG  + +Q   A+    P  +I+G   +      +K   +
Sbjct: 356 WCFRTAQELRAGGLHVAHDLMGRSLKAQMKEANRQNAPYAMIIGGNELEAGAATVKEMES 415

Query: 424 GIREDMSLEEVINYASH 440
           G +ED+  ++++ Y + 
Sbjct: 416 GEQEDVPFDDLVEYLTS 432


>gi|73662437|ref|YP_301218.1| histidyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|83305879|sp|Q49Y69|SYH_STAS1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|72494952|dbj|BAE18273.1| histidyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 420

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 122/417 (29%), Gaps = 27/417 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   K    + A + E        E+  P  +S +L+        D   KEM    D+ 
Sbjct: 12  LPNETKKWRFIEARLDELMEVYNYQEIRTPIFESTELFARGVGDSTDVVQKEMYTFKDKG 71

Query: 101 DKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           D+++   P     +      + ++   N P   Y     FR E + +    R R+F    
Sbjct: 72  DRSITLRPEGTAAVVRSYIENKMQGLPNQPIKLYYNGPMFRYERKQKG---RYRQFTQFG 128

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF------IV 212
                   P             Y     +     I    +      D  HE+        
Sbjct: 129 VEAIGAENPGVDAEVLAMAMHIYQSFGLKHLKLVINSIGD-----IDSRHEYNEALVKHF 183

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
               G+    C       P+   +   D          + T     TS  +   +   L 
Sbjct: 184 EPVIGDFCSDCQSRLHTNPMRILDCKIDKDKEAVKTAPRITEFLNETSKQYYADVKQHLD 243

Query: 273 E------NKRVSARGIEV--GHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMR 323
           +            RG++      F           A T     G+ + +     G     
Sbjct: 244 DLGVPYVEDPNLVRGLDYYTHTAFELMIDNPNYDGAITTLCGGGRYNGLLELLDGPHQTG 303

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           +  A+               +       + I    +       K+   L + G     D 
Sbjct: 304 IGFALSIERLLLALDEENIELDTEHDFDLFIVTMGEEADRYAVKLLNDLRRNGVKADKDY 363

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +  ++  Q   AD L     +++G + + ++K+ +K+  TG  E + L++++NY   
Sbjct: 364 LQRKVKGQMKQADRLNANYTIVIGEQELQENKINVKNMQTGESESVDLDKLVNYFKK 420


>gi|258423993|ref|ZP_05686875.1| glycyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|257845614|gb|EEV69646.1| glycyl-tRNA synthetase [Staphylococcus aureus A9635]
          Length = 463

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/443 (13%), Positives = 139/443 (31%), Gaps = 55/443 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN-----RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +NV     ++         G   +    L +  +W  SG  +++   M+
Sbjct: 32  WDYGPLGVELKNNVKKAWWQKFITQSPFNVG---IDAAILMNPKVWEASGHLNNFNDPMI 88

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D +          E+ M D+          L F   +  +     + P        E
Sbjct: 89  DNKD-SKIRYRADKLIEDYMQDVKGDENFIADGLSFEQMKKIIDDEGIVCPVSKTANWTE 147

Query: 155 ---FLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFH-----------------RL 188
              F +       +T + +   +        +FV+Y  +                   R 
Sbjct: 148 IRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRN 207

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +        +          F    +  E Q +      D+          D + L   
Sbjct: 208 EITPGNFIFRTREFEQMELEFFCKPGEEIEWQNYWKTFASDWLT--SLNMSSDNMRLRDH 265

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   + Y+  +     K      E   +++R            ++S            +
Sbjct: 266 DEDELSHYSNATTDIEYKFPFGWGELWGIASRTDFDLRKH---AEHSGEDFRYHDPETNE 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHD----------GKGIIWPDSVAPFKISLINIKAHD 358
            +        +GA RV  A +  ++D             + +  ++AP+K +++ +    
Sbjct: 323 KYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKK- 381

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   KI+ +LS     + +D+  + IG ++   D +G P  V      + D++V +
Sbjct: 382 --LSGEAIKIFEQLSSK-FSIDFDES-QSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTV 437

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R +  +  M + E+  + + +
Sbjct: 438 RDRDSMEQVRMPISELEAFLTEK 460


>gi|302518216|ref|ZP_07270558.1| LOW QUALITY PROTEIN: threonyl-tRNA synthetase [Streptomyces sp.
           SPB78]
 gi|302427111|gb|EFK98926.1| LOW QUALITY PROTEIN: threonyl-tRNA synthetase [Streptomyces sp.
           SPB78]
          Length = 448

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/384 (16%), Positives = 105/384 (27%), Gaps = 46/384 (11%)

Query: 16  RDAEIASHKLMLRT----GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           RD     H  + R     G       G+   LP G      +   +R  +   G   +  
Sbjct: 8   RDH---DHHRLGRALGLYGTDPLLGAGLPYLLPDGASVRHALEEYVRGLEVADGYQHVHS 64

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P L   +L+V SG +  Y  +M    +   +  +  P+       I+R+  +SYR LP  
Sbjct: 65  PVLGKQELYVRSGHWAHYRADMFPPMEVGGEHFVLRPSLCPHHALIYRAQARSYRELPLR 124

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
             ++   FR E     G +     +  +       PE                +  LGL 
Sbjct: 125 IAELGGMFRAEPSGTLGGLTRVRAIHLNDAHLFCAPESLAGEVAGALALIRTAYRALGLA 184

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFC-SKDFMDFPIPSENTDFDDIISLNSIVE 250
               R                    GE   +  ++   +    +                
Sbjct: 185 PSRYRLSL----------------PGEDAKYALAEGVWERSAAALAEALAGAGLDWEEER 228

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A Y    DV   +  D+      +S    +      FG  Y             +  
Sbjct: 229 GEAAFYGPKIDV---QARDAAGREFTLSTVQADFHQPAAFGLDYR-------AADGSRPR 278

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            V +    +G++  V A +   H G    W   V    + +       +   +A E    
Sbjct: 279 PVMVHRSVLGSLERVLARLIEVHGGAFPAWLAPVQVGVVPVG------EEQEEAAESFVR 332

Query: 371 RLSKVGCD-VFW-----DDMGEQI 388
           R    G           D  G + 
Sbjct: 333 RCRAAGLRGADVPGARGDPRGARP 356


>gi|39939231|ref|NP_950997.1| threonyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
 gi|39722340|dbj|BAD04830.1| threonyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
          Length = 308

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 101/299 (33%), Gaps = 29/299 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
              +   G+  WLP G      V   I +++       +  P + + +L+  SG  D Y 
Sbjct: 2   FNKEVGLGLPFWLPKGATVRRIVERYIVDKELSYDYHHVYTPIMANTELYRISGHLDHYA 61

Query: 91  KEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF-G 148
             M  +    +   ++  P +      I++    SY+ LP    ++ +  R E      G
Sbjct: 62  SNMFPIMTLENGEKLVLRPMNCPHHMMIYKKTPHSYKELPLRIAELGMMHRFEKSGAVSG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R RE  + DA+ F   P+  K    K+    L ++    +K+  +R            
Sbjct: 122 LQRVREMTLNDAHIF-ACPDQIKEEMKKIINLILEVYRDFNIKNYELRLS---------- 170

Query: 209 EFIVLADTGETQVFCS-KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                 D  +T+ + +          +      ++           A Y    DV   ++
Sbjct: 171 ----YRDPNDTEKYFNDDQMWHHAEKTLKETIQELSLPFKEAIGEAAFYGPKLDV---QV 223

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           F +L   + +S   ++    F    K+      TF G D K H   +    + +     
Sbjct: 224 FTALGNEETLSTVQLD----FLLPQKFD----LTFIGEDNKHHRPVVIHRAVVSTMERF 274


>gi|169628792|ref|YP_001702441.1| glycyl-tRNA synthetase [Mycobacterium abscessus ATCC 19977]
 gi|169240759|emb|CAM61787.1| Glycyl-TRNA synthetase (GlyS) [Mycobacterium abscessus]
          Length = 472

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/441 (13%), Positives = 135/441 (30%), Gaps = 46/441 (10%)

Query: 40  YSWLPLGQKALDNVN-AIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+     R     R   + +    +    +WV SG  + +     E L
Sbjct: 39  WDYGPLGVELKENIKKQWWRSVVTSRDDVVGLDSSVILPRQVWVASGHVEVFNDPLVECL 98

Query: 95  RLADRNDKAMIYGPTHE-----------------EVMTDIFRSHIKSYRNLPFTFYQIQL 137
               R+ +  +     E                 E++     +  +      F       
Sbjct: 99  NCHKRHRQDHLQEAYSEKEAKKGLTIAPESVPMTEIVCPDCGNKGQWTEPRDFNMMLKTY 158

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
               E     G+   R    +  +        +        +  +    R  +       
Sbjct: 159 LGPIE--TEEGLHYLRPETAQGIFINFKNVVTTSRQKPPFGIGQIGKSFRNEITPGNFIF 216

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            +          F+  +   E   +     + + +     D +++   +   E+ +    
Sbjct: 217 RTREFEQMEMEFFVEPSTAPEWHKYWIDTRLQWYV-DLGIDPENLRLYDHPKEKLSHYSD 275

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMG 315
            T D+  +  F   P  +     GI     F   T  K+S    + +  A+ + +   + 
Sbjct: 276 GTVDIEYKFGFSGNPWGELE---GIANRTDFDLSTHAKHSGEDLSYYDQAEDRRYTPYVI 332

Query: 316 SYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCR 362
               G  R   A +  ++                       +AP K++++ + + +    
Sbjct: 333 EPAAGLTRSFMAFLVDAYHEDEAPNAKGGVDTRTVLRLDPRLAPVKVAVLPL-SRNADLS 391

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              + + A L +   +V +DD G  IG ++   D +G P  V V    + D  V ++ R 
Sbjct: 392 PRAKALAAELRQSW-NVDFDDAGA-IGRRYRRQDEIGTPFCVTVDFDSLEDDSVTVRDRD 449

Query: 423 TGIREDMSLEEVINYASHRFS 443
              ++ + +  V ++ +    
Sbjct: 450 EMTQQRIPIGGVADHLAKTLK 470


>gi|118102209|ref|XP_001233746.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 510

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 56/154 (36%), Gaps = 4/154 (2%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD      +  L     H  S G   +LP G    + +   IR E    G  E+  P + 
Sbjct: 261 RDHRRIGKEQELF--FFHALSPGSCFFLPRGAHIYNTLVDFIRSEYQVRGFNEVVTPNIF 318

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           S  LW  SG +  Y   M       +  +   P +      +F    +S+R LP      
Sbjct: 319 SPRLWELSGHWQHYSAHMFSFTAGTET-LSLKPMNCPAHCLMFAHRPRSWRELPLRLADF 377

Query: 136 QLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPE 168
            +  R+E      G+ R R F  +DA+ F    +
Sbjct: 378 GVLHRNEPPGSLTGLTRVRRFQQEDAHIFCALEQ 411



 Score = 44.3 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 3/105 (2%)

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF--KISLINIKAHDQV 360
               G  H  +      G  RV     E +H    +       P         +      
Sbjct: 374 LADFGVLHRNEPPGSLTGLTRVRRFQQEDAHIFCALEQLPPRRPLWLSPLQAMVIPQAPD 433

Query: 361 CRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQV 404
                 +++A L + G     D D G  +G +   A L  +  Q+
Sbjct: 434 AEGYAREVHAMLRRDGVMADLDADAGATLGRKIRRAQLTHYNFQL 478


>gi|75523950|sp|Q7X2P1|SYP_SPHEL RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|32188210|gb|AAP46176.1| putative prolyl-tRNA synthetase [Sphingomonas elodea]
          Length = 510

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 145/444 (32%), Gaps = 93/444 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + +  ++ +    TG      P       +  E+   D + KEM  +
Sbjct: 35  GCMVIRPWGYGIWERIQRLLDDRIKATGHENCYFPLFIPLSYFEKEAEHVDGFAKEMAVV 94

Query: 97  ADRN----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
                               ++ ++  PT E V+       ++S+R+LP    Q     R
Sbjct: 95  THHRLIQKDGRLVPDPEAKLEEPLVVRPTSETVIGAAMSRWVQSWRDLPVLINQWANVVR 154

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E+R R   +R+ EFL ++ ++   T E ++    KM                       
Sbjct: 155 WEMRTRM-FLRTAEFLWQEGHTAHATVEEAQEETRKMLE--------------------- 192

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                      V  D  ET +       + P                  E++    +   
Sbjct: 193 -----------VYRDFAETCLAMPVVAGEKPEN----------------ERFPGAVSTF- 224

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                       E      + ++ G   + GT +S      F+ ++G+    Q  S+G+ 
Sbjct: 225 ----------SIEAMMQDGKALQAGTSHFLGTTFSSAQDIKFQNSEGQFELAQTTSWGV- 273

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKV-- 375
           + R++  +I    D  G+  P  VAP++I ++ +   +  D    D C+ + A L+K+  
Sbjct: 274 STRMIGGLIMVHGDDDGLRVPPMVAPWQIVIVPMLRDQPEDAATIDYCKSLQAELAKLTA 333

Query: 376 ---GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-------LTGI 425
                    D    +  ++       G P+ + VG + V+   V +  R           
Sbjct: 334 LGEPVRALLDLKAVKAQTKRWGWVKKGAPIVIEVGGRDVAGGNVSVIQRNKLYREDGKLD 393

Query: 426 REDMSLEEVINYASHRFSNNRPVL 449
              M   + +  A+    + +  L
Sbjct: 394 SRIMPRGDFVAEAAAILESIQQGL 417


>gi|161507424|ref|YP_001577378.1| histidyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
 gi|172048276|sp|A8YUZ9|SYH_LACH4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|160348413|gb|ABX27087.1| Histidyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
          Length = 428

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 72/425 (16%), Positives = 130/425 (30%), Gaps = 22/425 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    +   V    R   NR    E+  P+ ++ +++  S     +   K+M  
Sbjct: 8   GTVDILPEQSGSWQKVEETARNFFNRANYREIRTPSFENYEIFSRSSGDSSEIVEKQMYD 67

Query: 96  LADRNDKAMIYGPTHEEV--MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P          +           PF  + ++  FR E        R R
Sbjct: 68  FNDKGGRHIALRPEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           EF      SF  +   +      M    L        +       +  +     H+ +V 
Sbjct: 125 EFHQIGVESFGSSNPLADVQTIMMGHDLLGELGVKNYQLHINTLGNEQV-RKGYHDALVN 183

Query: 214 ADT---GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL--- 267
             T    E      +   D P+   ++  D          +        S  + E +   
Sbjct: 184 YFTPVKDELSEDSQRRLRDNPLRILDSKDDRDKKFLPDAPKIRDFLDDNSKANFESILKM 243

Query: 268 -----FDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                 D + ++  V       G IF F     SL  SAT     G+  ++     G   
Sbjct: 244 LDQLGIDYVIDDDLVRGLDYYTGVIFEFMVEDKSLWESATTILGGGRYDHLVEEFNGPET 303

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
             V   + E             +   +     I    +       +I   L K G +  +
Sbjct: 304 PAVGFGIGEERLMLVLEKQNPELFKNEGIDFFITNIGEGTAQKAIEIARSLRKQGFEADF 363

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV--INYAS 439
           D   +++  QF  AD  G    + +G K +++  + IK    G   D+SLE++  +N   
Sbjct: 364 DVNQKKLKGQFKKADREGAKYVITLGEKELANGVLNIKRLADGKTIDLSLEDINDMNKVM 423

Query: 440 HRFSN 444
               +
Sbjct: 424 KELKD 428


>gi|168183598|ref|ZP_02618262.1| glycine--tRNA ligase [Clostridium botulinum Bf]
 gi|237796979|ref|YP_002864531.1| glycyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657]
 gi|182673186|gb|EDT85147.1| glycine--tRNA ligase [Clostridium botulinum Bf]
 gi|229262061|gb|ACQ53094.1| glycine--tRNA ligase [Clostridium botulinum Ba4 str. 657]
          Length = 463

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 147/445 (33%), Gaps = 57/445 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + + PLG +  +NV     ++       E      +    L ++ +WV SG    +   +
Sbjct: 34  WDYGPLGVELKNNVKKAWWKKF----VQESPYNVGIDAAILMNSQVWVASGHVGGFSDPL 89

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS--YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +   +            EE MT+       +  + N     Y                  
Sbjct: 90  MDCKEC-KARFRADKLVEEHMTEQGVEKASADGWSNEKLKQYIDDNGIECPKCKAKNFTD 148

Query: 152 SREFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            R+F +       +T +     Y        +FV++  +      K     A+ G    +
Sbjct: 149 IRKFNLMFKTFQGVTEDAKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRN 208

Query: 206 LSH----------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                              EF     T        KD+    + +   + ++I   +   
Sbjct: 209 EITPGNFTFRTREFEQMELEFFCKPGTDLEWFNYWKDYCWNFLINLGINKENIRFRDHSQ 268

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGADGK 308
           E+ +    ATSD+     F    E   V+ R       F              +     K
Sbjct: 269 EELSHYSNATSDIEFLFPF-GWGELWGVADR-----TDFDLKKHMEHSGEDLNYLDPTTK 322

Query: 309 DHY-VQMGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHD 358
           + Y        +GA RVV A +  ++D            +    ++APFK +++ +    
Sbjct: 323 ERYVPYCIEPSLGADRVVLAFLVDAYDEEELEGGDVRNVLHLHPALAPFKAAVLPLSKK- 381

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  +++Y+ LSK   ++ +D+ G  IG ++   D +G P  + V    + D+ V I
Sbjct: 382 --LSDKSQEVYSMLSKK-FNIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTI 437

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +  +++ E+  +   +  
Sbjct: 438 RDRDTMNQIRVNINELEKFIEDKLE 462


>gi|187777500|ref|ZP_02993973.1| hypothetical protein CLOSPO_01075 [Clostridium sporogenes ATCC
           15579]
 gi|187774428|gb|EDU38230.1| hypothetical protein CLOSPO_01075 [Clostridium sporogenes ATCC
           15579]
          Length = 463

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 73/445 (16%), Positives = 145/445 (32%), Gaps = 57/445 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + + PLG +  +NV     ++       E      +    L ++ +WV SG    +   +
Sbjct: 34  WDYGPLGVELKNNVKKAWWKKF----VQESPYNVGIDAAILMNSQVWVASGHVGGFSDPL 89

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS--YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +   +            EE MT+       +  + N     Y                  
Sbjct: 90  MDCKEC-KARFRADKLVEEHMTEQGVEKASADGWSNEKLKQYIDDNGIECPKCKAKSFTD 148

Query: 152 SREFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            R+F +       +T +     Y        +FV++  +      K     A+ G    +
Sbjct: 149 IRKFNLMFKTFQGVTEDAKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRN 208

Query: 206 LSH----------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                              EF     T        KD+    + +   + + I   +   
Sbjct: 209 EITPGNFTFRTREFEQMELEFFCKPGTDLEWFNYWKDYCWNFLINLGINKESIRFRDHSQ 268

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGADGK 308
           E+ +    ATSD+          E   V+ R       F              +     K
Sbjct: 269 EELSHYSNATSDI-EFLFPFGWGELWGVADR-----TDFDLKKHMEHSGEDLNYLDPTTK 322

Query: 309 DHY-VQMGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHD 358
           + Y        +GA RVV A +  ++D            +    ++APFK +++ +    
Sbjct: 323 ERYVPYCIEPSLGADRVVLAFLVDAYDEEELEGGDVRNVLHLHPALAPFKAAVLPLSKK- 381

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D  +++Y+ LSK   ++ +D+ G  IG ++   D +G P  + V    + D+ V I
Sbjct: 382 --LSDESQEVYSMLSKK-FNIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTI 437

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +  +++ E+  +   +  
Sbjct: 438 RDRDTMDQIRVNINELEKFIEDKLQ 462


>gi|167747961|ref|ZP_02420088.1| hypothetical protein ANACAC_02693 [Anaerostipes caccae DSM 14662]
 gi|167652611|gb|EDR96740.1| hypothetical protein ANACAC_02693 [Anaerostipes caccae DSM 14662]
          Length = 463

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 62/443 (13%), Positives = 132/443 (29%), Gaps = 51/443 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKKAWWKKFI----QESPYNVGVDCAILMNPQTWVASGHLGGFSDPL 87

Query: 94  LRLADRNDK---AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           +   + +++     I     +E   +I    +  +       +            +    
Sbjct: 88  MDCKECHERFRADKIIEDYMDEHGMEIEGGSVDGWTKEEMVDFINDHDIVCPSCGKKNFT 147

Query: 151 RSREFLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSI 193
             REF +       +T +     Y                             ++G    
Sbjct: 148 DIREFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQVGKSFR 207

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQ--VFCSKDFMDFPIPSENT--DFDDIISLNSIV 249
                          E + L    E    +     + DF I    T    DD + +    
Sbjct: 208 NEITPGNFTFRTREFEQMELEFFCEPDTDLEWFAYWKDFCINWLKTLGITDDQMRVRDHG 267

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           ++  + Y+  +            E   ++ R              S      F     + 
Sbjct: 268 KEELSFYSKATSDIEFLFPFGWGELWGIADRTDYDLTQHQ---NTSGEDLTYFDDEKKER 324

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQV 360
           +   +    +GA RV  A + +++D + +          +  ++AP KI ++ +      
Sbjct: 325 YIPYVIEPSLGADRVTLAFLCAAYDEEELEGGDKRTVLRFHPAIAPVKIGVLPLSKK--- 381

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   K+Y  L     +  +D+ G  IG ++   D +G P  V        D  V ++ 
Sbjct: 382 LAEGAGKVYETL-AKYYNCEYDERG-NIGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRD 439

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +E + +E++  Y   +F 
Sbjct: 440 RDTMEQERVKIEDLKEYFEKKFD 462


>gi|326202063|ref|ZP_08191933.1| LOW QUALITY PROTEIN: glycyl-tRNA synthetase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987858|gb|EGD48684.1| LOW QUALITY PROTEIN: glycyl-tRNA synthetase [Clostridium
           papyrosolvens DSM 2782]
          Length = 462

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 66/439 (15%), Positives = 140/439 (31%), Gaps = 46/439 (10%)

Query: 40  YSWLPLGQKALDNVNA-IIREEQNRTGA-IEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     R+    +   + +    L +  +WV SG    +   ++   
Sbjct: 34  WDYGPLGVELKNNVKKAWWRKFIQESPYNVGVDCAILMNPQVWVASGHVGGFSDPLIDCK 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D   +        +    +     +   +N     Y      +            R+F +
Sbjct: 94  DCKTRHRADKLIEDWNAENNIEFRVDGLKNEELMQYIKDKGVKCPGCGSANFTEIRKFNL 153

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP------- 201
                  +T +     + +          F +  R   +     I    +S         
Sbjct: 154 MFKTFQGVTEDSKAEIFLRPETAQGIFVNFKNVQRTTRKKIPFGIGQIGKSFRNEITPGN 213

Query: 202 ------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                     +  EF              KDF    + S N   +++   +   E+ +  
Sbjct: 214 FTFRTREFEQMELEFFCEPGKDLEWFKYWKDFCYNWLLSLNMTKENLKLRDHEKEELSHY 273

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS--LPMSATFKGADGKDHYVQ 313
             AT+D+         P        GI     F      +      + F     + +   
Sbjct: 274 SNATTDI-----EFLFPFGWGELW-GIADRTDFDLKQHMTHAKDDLSYFDPTTNEKYVPY 327

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDA 364
                +GA RV  A +  +++ + +          +  ++AP KI+++ +        + 
Sbjct: 328 CIEPSLGADRVTLAFLCDAYNEEEVSEGDVRTVLRFHPAIAPVKIAVLPLSKK---LGEE 384

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            EK+Y  L+K      +D+ G  IG ++   D +G P  +      + D  V I+ R T 
Sbjct: 385 AEKVYHMLTKT-FYCEYDETG-SIGKRYRRQDEIGTPYCITFDFDSLEDKSVTIRERDTM 442

Query: 425 IREDMSLEEVINYASHRFS 443
            +  + ++E+  Y  ++F 
Sbjct: 443 QQVRIKIDELAAYFENKFE 461


>gi|300743942|ref|ZP_07072962.1| glycine--tRNA ligase [Rothia dentocariosa M567]
 gi|300380303|gb|EFJ76866.1| glycine--tRNA ligase [Rothia dentocariosa M567]
          Length = 459

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 62/454 (13%), Positives = 134/454 (29%), Gaps = 51/454 (11%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNV-----NAIIREEQNRTGAIEMSVPTLQS 76
           R G + Q      G    + + PLG +  +N+        +R   +  G   +    +  
Sbjct: 16  RRGFVFQAGEIYGGSRSAWDYGPLGVELKENIRQQWWQRFVRSRADMVG---LDSSVILP 72

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +W  SG   ++   M  L +           H     +  +                 
Sbjct: 73  RPVWEASGHVATF---MDPLVECLSCHRRQRQDHLIEAFEAKKGRAPENMGEVVCPNCGT 129

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL-------- 188
                E +   G++++    + +          +       F + +    +         
Sbjct: 130 RGEWTEPQNFSGLLKTYLGPVDNEEGLHFLRPETAQGIFVNFNNVVTAARKRPPFGIGQI 189

Query: 189 GLKSIPMRAESGPIGGDLSHEFI-----VLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           G            I      E +     V  D  +       +           + +++ 
Sbjct: 190 GKAFRNEITPGNFIFRTREFEQMEIEYFVHPDEADKHFDAWVEDCWNWFVDLGINPENMR 249

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             +   +      A T D+     F      E   V+ R      +     ++S      
Sbjct: 250 RFDVPEDDRAHYSAGTIDIEYRFGFQGGEWGELMGVANRTDYDLGVHN---EHSNAKLEY 306

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFK 348
           F  A G+ +   +     G  R + A +  ++                       +AP K
Sbjct: 307 FDQASGERYVPYVIEPSFGLTRSMMAFLVDAYVEDEAPNTKGGVDKRVVLKLDPRLAPVK 366

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            +++ +    +   +   K+ A L     ++ +D+ G  IG ++   D +G P  + V  
Sbjct: 367 AAVLPLSKKPE-LSEPAHKLAADLCGAW-NIDYDEAGA-IGRRYRRQDEIGTPFCITVDF 423

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             + D  V I+ R T  +E ++L++V  Y + R 
Sbjct: 424 DTLEDQAVTIRERDTMSQERVALDQVKAYLAARL 457


>gi|260101665|ref|ZP_05751902.1| histidine-tRNA ligase [Lactobacillus helveticus DSM 20075]
 gi|260084525|gb|EEW68645.1| histidine-tRNA ligase [Lactobacillus helveticus DSM 20075]
          Length = 428

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 69/424 (16%), Positives = 133/424 (31%), Gaps = 20/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    +   V    R   NR    E+  P+ ++ +++  S     +   K+M  
Sbjct: 8   GTVDILPEQSGSWQKVEETARNFFNRANYREIRTPSFENYEIFSRSSGDSSEIVEKQMYD 67

Query: 96  LADRNDKAMIYGPTHEEV--MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P          +           PF  + ++  FR E        R R
Sbjct: 68  FNDKGGRHIALRPEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF  +   +      M           +Y    + LG + +        +  
Sbjct: 125 EFHQIGVESFGSSNPLADVQTIMMGHDLLGELGVKNYQLHINTLGDEQVRKGYHDALVNY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVH 263
               +  +  D+           +D     +     D   +   ++    A + +   + 
Sbjct: 185 FTPVKDKLSEDSQRRLRDNPLRILDSKDDRDKKFLPDAPKIRDFLDDNSKANFESILKML 244

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           ++   D + ++  V       G IF F     SL  SAT     G+  ++     G    
Sbjct: 245 DQLGIDYVIDDDLVRGLDYYTGVIFEFMVEDKSLWESATTILGGGRYDHLVEEFNGPETP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E             +   +     I    +       +I   L K G +  +D
Sbjct: 305 AVGFGIGEERLMLVLEKQNPELFKNEGIDFFITNIGEGTAQKAIEIVRSLRKQGFEADFD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV--INYASH 440
              +++  QF  AD  G    + +G K +++  + IK    G   D+SLE++  +N    
Sbjct: 365 VNQKKLKGQFKKADREGAKYVITLGEKELANGVLNIKRLADGKTIDLSLEDINDMNKVMK 424

Query: 441 RFSN 444
              +
Sbjct: 425 ELKD 428


>gi|256396139|ref|YP_003117703.1| glycyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256362365|gb|ACU75862.1| glycyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 460

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 59/438 (13%), Positives = 116/438 (26%), Gaps = 48/438 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           Y + PLG +  +N+     +     R   + +    + + ++W  SG    +   +    
Sbjct: 33  YDYGPLGVELKENIKRQWWKAMVTGREDVVGLDSSVILAREVWEASGHVKEFTDPL---- 88

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
                              I     K  R        I                    L 
Sbjct: 89  ----TECQSCHKRFREDHLIEAYEAKHNRVPERGLADINCPNCGNKGTFTEPKVFNLMLQ 144

Query: 158 KDAYSFDLT---PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--------- 205
                             +   +FVSY  +      K      + G    +         
Sbjct: 145 THLGVTMDDAGLAYLRPETAQGIFVSYKTVRDASRKKPPFGIGQIGKSFRNEITPGNFIF 204

Query: 206 -------LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                  +  EF V     E       +             +++       E+ +     
Sbjct: 205 RTREFEQMEMEFFVKPGEDEQWFEYWLNERYNWWTDLGLKPENLRFFEHPAEKLSHYSKR 264

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGS 316
           T D+     F      +     G+     F   T  K+S       +   G+     +  
Sbjct: 265 TVDIEYRFNF---GGQEFSELEGVANRTDFDLSTHAKHSGEDFTQLEQETGERWTPFVVE 321

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK------ISLINIKA------HDQVCRDA 364
              G  R + A +  ++              +        L  +KA       +      
Sbjct: 322 PAAGVNRGMLAFLLDAYAEDEAPNAKGQMEVRKVLRLDKRLAPVKAAVLPLSRNVDLSPK 381

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              +   L K   +V +DD G  IG ++   D +G P  + V    + D  V ++ R + 
Sbjct: 382 ARDLAQLLRKNW-NVEFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLDDQAVTVRERDSM 439

Query: 425 IREDMSLEEVINYASHRF 442
            ++ ++L++V  Y + R 
Sbjct: 440 EQQRVALDQVEGYLAARL 457


>gi|307069651|ref|YP_003878128.1| putative prolyl-tRNA synthetase [Candidatus Zinderia insecticola
           CARI]
 gi|306482911|gb|ADM89782.1| putative prolyl-tRNA synthetase [Candidatus Zinderia insecticola
           CARI]
          Length = 553

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 126/223 (56%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           M   K+F+  L++   +    + K++ + GMI + S GIY+++P+    L  + +II  E
Sbjct: 1   MLAKKFFIFTLKKILSNINNKTLKIINKIGMIKKISSGIYTYMPILLLILKKIKSIINYE 60

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             +    E+ +P +Q +++W ++ R+     E+L+  +R  K  +  PT EE++T I + 
Sbjct: 61  MKKNNITEILMPIIQPSNIWKKTKRWYKMKNELLKFKNRKKKYFVMQPTSEELITYIIKK 120

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + +Y+ LP  FY IQ KFRDELR + G++R +EF+MKDAYSFD++ + S  +Y  M   
Sbjct: 121 ELLNYKQLPLIFYNIQNKFRDELRCKSGLIRLKEFIMKDAYSFDISFKNSIKNYKLMLNI 180

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           Y  IF+++ LK   ++  +  +   +SHEF ++         C
Sbjct: 181 YKNIFNKINLKFKILKTNNKNMEWIISHEFHIITKNSNNYFLC 223



 Score = 77.1 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 86/174 (49%), Gaps = 3/174 (1%)

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
           N     + IE+ HIF  G  YS  +++ +   + K  +  MGSYGIG  R++  +IE + 
Sbjct: 382 NILKIKKSIEIAHIFLLGKFYSRLINSKYINYNNKKKFFFMGSYGIGISRLLQIIIEKNI 441

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D  GI WP+++ PF + +  I  ++   +     IY +L  +  ++  D+    IG    
Sbjct: 442 DKIGIKWPNNLIPFNLVICFI-KNNNYIKKISYFIYYKLLLLNINLIIDNRNINIGYMLN 500

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR-EDMSLEEVINYASHRFSNNR 446
             +L+G P  +IVG  F+  + +  K R      +++++ ++  +  ++ +  +
Sbjct: 501 DWELIGIPNYIIVG-NFIKKNIISYKVRKKKNIYKNININKIFKFIFNKINIYK 553


>gi|296130022|ref|YP_003637272.1| glycyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
 gi|296021837|gb|ADG75073.1| glycyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
          Length = 462

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 63/434 (14%), Positives = 129/434 (29%), Gaps = 40/434 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           + + PLG +  +N+          +R   + +    +    +WV SG    +   +    
Sbjct: 35  WDYGPLGVELKENIKRQWWRAMVTSRDDIVGLDSSVILPRQVWVASGHVGVFTDPLTECL 94

Query: 97  -ADRNDKAMIYGPTHE------------EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
              +  +        E            E+      +  +      F           E 
Sbjct: 95  SCHKRFREDHLLEDFEAKKGRAPETGLAEIACPNCGTRGQWTEPRDFNMMLKTYLGPVED 154

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G+   R    +  +        +        +  +    R  +        +    
Sbjct: 155 --ESGLHYLRPETAQGIFVNFKNVYTAARMKPPFGIGQIGKSFRNEITPGNFIFRTREFE 212

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                EF V   T ET      D             +++       E+ +     T D+ 
Sbjct: 213 QMEM-EFFVEPGTDETWHQYWIDTRTDWYVDLGIARENLRHYEHPAEKLSHYSKRTVDIE 271

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F      +     GI     F  GT   +S    + F  A  + +   +     G 
Sbjct: 272 YKFGFSGSEWGELE---GIANRTDFDLGTHSEHSGQDLSFFDQAKNERYVPYVIEPAAGL 328

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  S+                       +AP K +++ + + ++        +
Sbjct: 329 TRSLMAFLVESYSEDEAPNTKGGVDKRTVLKLDPRLAPVKAAVLPL-SRNEQLSPKARDL 387

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A L +   +V +DD G  IG ++   D +G P  + V    + D  V I+HR    ++ 
Sbjct: 388 AAELRRSW-NVDFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLDDQAVTIRHRDDMSQQR 445

Query: 429 MSLEEVINYASHRF 442
           ++L++V  Y + R 
Sbjct: 446 VALDQVTGYLAQRL 459


>gi|223943839|gb|ACN26003.1| unknown [Zea mays]
          Length = 419

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 63/396 (15%), Positives = 124/396 (31%), Gaps = 76/396 (19%)

Query: 69  MSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAMIY----GPTHEEVMTDIFRSHIK 123
           M  P       +  E+   + +  E+  +     K +       PT E ++  +F   I+
Sbjct: 1   MYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTKWIQ 60

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           SYR+LP    Q               MR++ F+                           
Sbjct: 61  SYRDLPLMINQWANV-------TRWEMRTKPFIR-------------------------- 87

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                          +        H      +  E +       +      E+     I 
Sbjct: 88  ---------------TLEFLWQEGHTAHATLEEAEKEAM-QMIDVYTKFAFEHAAIPVIP 131

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              S VE +                    E      + ++ G     G  +S      F 
Sbjct: 132 GRKSRVETFAG-----------ANRTYTIEAMMGDKKALQAGTSHNLGQNFSRAFGTQFM 180

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV--- 360
             +G+  +V   S+ I + R V  +I +  D  G++ P  +AP ++ ++ I         
Sbjct: 181 DENGQIEHVWQTSWAI-STRFVGGIIMTHGDDAGLMLPPRIAPIQVIIVPIWKKGDEKAV 239

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +A + +   L + G  V  DD   +  G +F   ++ G P+++ +G + V++  V + 
Sbjct: 240 VVEAVDSVQKILKEAGIRVKVDDSELRTPGWKFNHYEMKGVPVRIEIGPRDVTNKSVVVS 299

Query: 420 HRL-TGIRE-----DMSLEEVINYASHRFSNNRPVL 449
            R   G +       M    ++N+   R  + +  L
Sbjct: 300 RRDVPGKQGKEFGVSMEPSILVNHIKGRLDDIQASL 335


>gi|312110102|ref|YP_003988418.1| histidyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
 gi|311215203|gb|ADP73807.1| histidyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
          Length = 423

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 65/407 (15%), Positives = 119/407 (29%), Gaps = 16/407 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I R+   R    E+  P  +  +L++       D   KEM    DR  +++   
Sbjct: 20  WQYVEKIARDICRRYNYREIRTPIFEHTELFLRGVGDTTDIVQKEMYTFEDRGGRSITLR 79

Query: 108 PTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   F  + +    N P   Y I   FR E        +  +F ++   S    
Sbjct: 80  PEGTAPVVRSFVENKMYGDPNQPIKLYYIGPMFRYERPQAGRFRQFVQFGVEALGS--DD 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCS 224
           P             Y  +  +     I    +  S         +        E    C 
Sbjct: 138 PAIDAEVIAMAMELYQSLGLKKVRLVINSLGDIESRKAHRQALID-HFQNRIHEFCEDCQ 196

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENKR 276
                 P+   +   D    L +            S  + EK+   L         + + 
Sbjct: 197 VRLKKNPLRILDCKKDRDHELMATAPSILDYLNEESSRYFEKVKSYLAKLGIPFEVDARL 256

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V          F   +      + T     G+ + +     G  A  +  A+        
Sbjct: 257 VRGLDYYNHTTFEIMSDAEGFGAITTLCGGGRYNGLVQEIGGPEAPGIGFALSIERLLAA 316

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                 ++   +     + A  +  ++   ++   L K G     D    +I +Q   AD
Sbjct: 317 LDAEGVALPVQRGIDCYVVAIGEKAKEESVQLVHELRKAGIAADKDYQDRKIKAQLKAAD 376

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            L      I+G   ++   + IK   TG + ++ L  V++Y   R S
Sbjct: 377 RLNAKFVAILGEDELAKEVINIKEMGTGEQTEVPLPSVVDYLKERLS 423


>gi|329733116|gb|EGG69453.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus 21193]
          Length = 420

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 60/413 (14%), Positives = 116/413 (28%), Gaps = 19/413 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   K    +   + E        E+  P  +S DL+        D   KEM    D+ 
Sbjct: 12  LPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKG 71

Query: 101 DKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           D+++   P     +        ++   N P   Y     FR E + +    +  +F ++ 
Sbjct: 72  DRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEA 131

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                  P         +   Y     +     I    +         +E +V       
Sbjct: 132 --IGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMAS--RKEYNEALVKHFEPVI 187

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIV-----------EQWTAPYAATSDVHNEKLF 268
             FCS                 +      +           E+  A Y       ++   
Sbjct: 188 HEFCSDCQSRLHTNPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKAYLDDLDI 247

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAA 327
             + +   V          F           A T     G+ + +     G     +  A
Sbjct: 248 PYIEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGIGFA 307

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +               +   +   + I            K+   L   G     D +  +
Sbjct: 308 LSIERLLLALEEEGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRK 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           I  Q   AD LG    +++G + + ++K+++K+  TG  E + L+ ++ Y   
Sbjct: 368 IKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK 420


>gi|242373870|ref|ZP_04819444.1| glycyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
 gi|242348424|gb|EES40026.1| glycyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
          Length = 463

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 65/452 (14%), Positives = 144/452 (31%), Gaps = 69/452 (15%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN-----RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +N+     ++         G   +    L +   W  SG   ++   M+
Sbjct: 32  WDYGPLGVELKNNIKKAWWQKFITQSPYNVG---IDAAILMNPKTWEASGHLGNFNDPMI 88

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS-- 152
              D +          E+ M             L F   +  +     + P  G      
Sbjct: 89  DNKD-SKIRYRADKLIEDYMQKEKGDENFIADGLSFDEMKKIIDDEGIVCPVSGTANWTD 147

Query: 153 -REFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFH-----------RLGLKSIP 194
            R+F +       +T + +   +        +FV+Y  +             ++G     
Sbjct: 148 IRQFNLMFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRN 207

Query: 195 MRAESGPIGGDLSHEFIV---LADTGE-------TQVFCSKDFMDFPIPSENTDFDDIIS 244
                  I      E +        GE        + F S+   D  I  EN    D   
Sbjct: 208 EITPGNFIFRTREFEQMELEFFCKPGEEIEWQNFWKTFASQWLKDLNINEENMRLRD--- 264

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                E   + Y+  +     +      E   +++R       F    K+S        +
Sbjct: 265 ---HDEDELSHYSNATTDIEYRFPFGWGELWGIASR-----TDFDL-QKHSEHSGEDFKY 315

Query: 303 KG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHD----------GKGIIWPDSVAPFKISL 351
                 + +        +GA RV  A +  +++             + +  ++AP+K ++
Sbjct: 316 HDPETNEKYVPYCIEPSLGADRVTLAFLCDAYEEEGVEGSKDARTVMHFHPALAPYKAAV 375

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +            KI+ +LS+    + +D+  + IG ++   D +G P  +      +
Sbjct: 376 LPLSKK---LSSEAIKIFEQLSQ-NFSIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSL 430

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            D++V ++ R +  +  M + E+  + + +  
Sbjct: 431 EDNQVTVRDRDSMEQVRMPISELETFLAEKIK 462


>gi|315658099|ref|ZP_07910971.1| histidine--tRNA ligase [Staphylococcus lugdunensis M23590]
 gi|315496428|gb|EFU84751.1| histidine--tRNA ligase [Staphylococcus lugdunensis M23590]
          Length = 419

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 59/413 (14%), Positives = 116/413 (28%), Gaps = 21/413 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        +   + +        E+  P  +S DL+        D   KEM    D+ 
Sbjct: 12  LPEETAKWRYIENKLAQLMKLYNYQEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKG 71

Query: 101 DKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P     +      + ++   N P   Y     FR E + +    R R+F    
Sbjct: 72  NRSITLRPEGTAAVVRSYIENKMQGLPNQPVKLYYNGPMFRYERKQKG---RYRQFTQFG 128

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                   P         +   Y     +     I    +         +E +V      
Sbjct: 129 VEAIGAEDPSIDAEVLAMVMQIYQSFGLKHLKLVINSIGD--AESRKEYNEALVKHFEPV 186

Query: 219 TQVFCSKDFMDFPIPSENTDFDDI-----------ISLNSIVEQWTAPYAATSDVHNEKL 267
              FCS                 +              + + ++  A Y A     ++  
Sbjct: 187 IDDFCSDCQSRLHTNPMRILDCKVDRDKKAIKTAPKITDYLNDESKAYYEAVKQYLDDLN 246

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVA 326
              + ++  V          F           A T     G+ + +     G     +  
Sbjct: 247 IPYVEDSNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLQLLDGPNQTGIGF 306

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A+               +   +   + I    +       K+     K G     D +  
Sbjct: 307 ALSIERLLLALEEENIDIVENETLDLFIVTMGEAANHFAVKLLNDCRKNGIIADKDYLNR 366

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +I  Q   AD L     +++G + + +  VE+KH  +G  E +  E +++Y  
Sbjct: 367 KIKGQMKQADRLNATYTIVIGDQELDNQIVEVKHMESGNSETVKFENLLSYFK 419


>gi|262189799|ref|ZP_06048144.1| prolyl-tRNA synthetase [Vibrio cholerae CT 5369-93]
 gi|262034317|gb|EEY52712.1| prolyl-tRNA synthetase [Vibrio cholerae CT 5369-93]
          Length = 91

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 50/88 (56%)

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +  + A EK+YA L+  G +V +DD  E+ G  F+  +L+G P  +I+G + + +  
Sbjct: 4   HKSERVQQAAEKLYAELTAAGIEVLFDDRKERPGVMFSDMELIGVPHTIIIGDRSMDEGH 63

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
            E K+R  G +E +++E +I++   + +
Sbjct: 64  FEYKNRRQGEKEAVAMESIIDFIQAKLA 91


>gi|297160648|gb|ADI10360.1| glycyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1]
          Length = 460

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 59/432 (13%), Positives = 127/432 (29%), Gaps = 36/432 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    + + ++W  SG   ++   +    
Sbjct: 33  WDYGPLGVELKENIKRQWWRSMVTSRDDVVGLDSSVILAREVWEASGHVATFTDPLTECT 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +        E       R   ++        +        E +   G++ +     
Sbjct: 93  SCHKR-FRADHLEEAYEAKHGRQ-PENGLADINCPHCGTKGSFTEPKQFSGLLSTHLGPT 150

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------LGLKSIPMRAESGPIGG----- 204
           +D+ S       +       F++  +   R        +G            I       
Sbjct: 151 QDSASVAYLRPETAQGIFTNFLAVQQTSRRKPPFGIAQMGKSFRNEITPGNFIFRTREFE 210

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +  EF V     ET      +              +I       E+ +     T+D+  
Sbjct: 211 QMEMEFFVKPGEDETWQEYWMEQRWNWYRDLGLQEANIRWYEHPKEKLSHYSKRTADIEY 270

Query: 265 EKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                     E + V+ R           ++ S    + F    G+     +     G  
Sbjct: 271 RFNLGGSEWGELEGVANRTDYDLKAH---SQASGQDLSYFDQEAGERWTPYVIEPAAGVG 327

Query: 323 RVVAAVI--ESSHDGKGIIWPDSVAPFKISLIN----------IKAHDQVCRDACEKIYA 370
           R + A +      D              + L              + +       + +  
Sbjct: 328 RAMLAFLLDAYIEDEAPNAKGKMEKRTVLRLDPRLAPVKVAVLPLSRNPQLSPKAKGLAT 387

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R T  +E +S
Sbjct: 388 DLRKHW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAVTVRERDTMKQERVS 445

Query: 431 LEEVINYASHRF 442
           L+++ +Y   R 
Sbjct: 446 LDQIQSYLGGRL 457


>gi|223985700|ref|ZP_03635747.1| hypothetical protein HOLDEFILI_03053 [Holdemania filiformis DSM
           12042]
 gi|223962311|gb|EEF66776.1| hypothetical protein HOLDEFILI_03053 [Holdemania filiformis DSM
           12042]
          Length = 458

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 59/442 (13%), Positives = 134/442 (30%), Gaps = 55/442 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ-----NRTGAIEMSVPTLQSADLWVESGRYDSYGK--- 91
           + + PLG +  DN+     ++      N  G   +    L +  +W  SG    +     
Sbjct: 33  WDFGPLGVELKDNIKRAWWKKFIQSHPNNVG---IQAAILMNPKVWEASGHLKGFSDPLM 89

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL---RPRFG 148
           +      R+    +     E  +     S+ K    +             +    R    
Sbjct: 90  DCRHCKTRHRADHLIEEATEGKVVPEGWSNEKMMDFIKENHIACPNCGSHDFTDIRQFNL 149

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESG 200
           + ++ + +++DA S       +       F +  R   R         G           
Sbjct: 150 MFKTFQGILEDAKSTIYLRPETAQGMFVNFKNVQRSMRRKLPFGIGQIGKSFRNEITPGN 209

Query: 201 PIGGDLSHEFIVL---ADTGE-------TQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            I      E + +      GE        + FC     +  + +E+  F +         
Sbjct: 210 FIFRTREFEQMEMEFFCKPGEDLQWYEYWKNFCMNWLTNLGLNAESLRFRE------HTP 263

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           +  A Y+  +            E   ++ R            ++S            + +
Sbjct: 264 EELAFYSKGTSDIEYLFPFGWGELWGIADRTDYDLKTHQ---EHSGESLEYLDPQTNEKY 320

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVC 361
                   +G  R++ A +  ++D + +             ++AP K  ++ +       
Sbjct: 321 LPYCVEPAVGVERLMLAFLCDAYDEEVLNEKDTRVVLHLHPALAPVKACILPLSK---QL 377

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             + ++IYA+L+       +D+ G  IG ++   D +G P  V +      D  V ++ R
Sbjct: 378 SASAKEIYAQLADS-FVCEYDEAG-SIGKRYRRQDAIGTPFCVTIDFDTEKDGCVTVRER 435

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            +  +  + + E+  +      
Sbjct: 436 DSMEQVRLPISELQAHIEASLK 457


>gi|170289504|ref|YP_001739742.1| histidyl-tRNA synthetase [Thermotoga sp. RQ2]
 gi|229558740|sp|B1L829|SYH_THESQ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|170177007|gb|ACB10059.1| histidyl-tRNA synthetase [Thermotoga sp. RQ2]
          Length = 420

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 124/409 (30%), Gaps = 21/409 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R      G  E+  P  +  +L+V S     D   KEM    D+  +++   
Sbjct: 20  WRYVEETFRNVCESAGIEEIRTPIFEQTELFVRSVGEESDIVQKEMYTFQDKAGRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  +    R     +Y I   FR E        R R+F            
Sbjct: 80  PEGTAPVVRAFLENSLIDRGFQQRYYYIGPMFRYEKPQSG---RLRQFHQVGFEIIGPES 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCSK 225
             +      +  ++L    RLGL    +   S   P+      E +           C  
Sbjct: 137 PKADFEVIMLVDTFL---RRLGLTKYKIHLNSIGCPVCRKNYREALKEYYGQVLDNLCDD 193

Query: 226 DFMDFPIPSENTDFDDI---------ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
               +           +          S++ + +   A Y    +  N    + + ++  
Sbjct: 194 CKRRYETNILRLLDCKVDHEYSLNAPKSVDYLCDSCRAHYKKLKEYLNTFEIEYVEDHTL 253

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V  RG++      F  ++    + +     G+   +     G     +  A         
Sbjct: 254 V--RGLDYYTRTVFEVRHEGLGAQSAIAGGGRYDGLFAELGGSSVPALGFAGGIERIILA 311

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                  +    + L+ I    +       ++   L K G  V  D M  ++  Q   A 
Sbjct: 312 LKAEGIEIPMKNVHLVYIATLGEKAFMDGVRLAGELRKKGLSVDVDIMDRKLSGQLKHAS 371

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +G    VI+G + +    V ++   TG + ++  +   +Y + R S +
Sbjct: 372 RMGSRYAVIIGDEELEKGIVILRDLETGDQVEIDRDFAADYIAERVSKD 420


>gi|259488480|tpe|CBF87946.1| TPA: prolyl-tRNA synthetase (AFU_orthologue; AFUA_1G10750)
           [Aspergillus nidulans FGSC A4]
          Length = 427

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 94/182 (51%), Gaps = 4/182 (2%)

Query: 265 EKLFDSLPENKRVSAR---GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  D  P+  +   +    +E+GH F+ GT+YS  + A    ++     +QMG +GIG 
Sbjct: 245 VQDGDQCPKCTQGVLKSQTTVELGHTFHLGTRYSEVLKARIVNSENDRVPMQMGCHGIGV 304

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++ AV +S  D KG+ WP  +AP+++ ++    + +      + + +       DV  
Sbjct: 305 SRMITAVADSLADAKGLNWPKIIAPWEVVIVPAPGNQEDALGVYDLLASD-KASPIDVLL 363

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  +  G +   ADL+G+P+ V+VG+ + ++  +E++ R  GIR+D+    ++ +    
Sbjct: 364 DDRDKTTGWKLGDADLIGYPVIVVVGNGWKTNRILEVQCRRLGIRQDVPDGGLLPFVQSL 423

Query: 442 FS 443
            +
Sbjct: 424 LA 425


>gi|67518071|ref|XP_658805.1| hypothetical protein AN1201.2 [Aspergillus nidulans FGSC A4]
 gi|40746638|gb|EAA65794.1| hypothetical protein AN1201.2 [Aspergillus nidulans FGSC A4]
          Length = 416

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 94/182 (51%), Gaps = 4/182 (2%)

Query: 265 EKLFDSLPENKRVSAR---GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  D  P+  +   +    +E+GH F+ GT+YS  + A    ++     +QMG +GIG 
Sbjct: 234 VQDGDQCPKCTQGVLKSQTTVELGHTFHLGTRYSEVLKARIVNSENDRVPMQMGCHGIGV 293

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++ AV +S  D KG+ WP  +AP+++ ++    + +      + + +       DV  
Sbjct: 294 SRMITAVADSLADAKGLNWPKIIAPWEVVIVPAPGNQEDALGVYDLLASD-KASPIDVLL 352

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD  +  G +   ADL+G+P+ V+VG+ + ++  +E++ R  GIR+D+    ++ +    
Sbjct: 353 DDRDKTTGWKLGDADLIGYPVIVVVGNGWKTNRILEVQCRRLGIRQDVPDGGLLPFVQSL 412

Query: 442 FS 443
            +
Sbjct: 413 LA 414


>gi|162452041|ref|YP_001614408.1| prolyl-tRNA synthetase [Sorangium cellulosum 'So ce 56']
 gi|161162623|emb|CAN93928.1| proS [Sorangium cellulosum 'So ce 56']
          Length = 518

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/436 (12%), Positives = 123/436 (28%), Gaps = 57/436 (13%)

Query: 27  LRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVES 83
           +R   + + S   G     P G    +N+   +      TG      P       L  E+
Sbjct: 27  VRAADLAESSPVRGCMVIKPWGYAIWENIQRELDSMFKATGHKNAYFPLFIPKSFLEKEA 86

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
              + + KE   +         +          I     +    L               
Sbjct: 87  EHVEGFAKECAVVTH-------HRLVPGPGGGLIPDPQARLEEPLIVRPT---------- 129

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
                                 +      ++     SY  +   +   +  +R E     
Sbjct: 130 ----------------------SETIIGAAFASWVQSYRDLPLLINQWANVVRWELRTRL 167

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
              + EF+     G T      +  +  +                +     P  A+    
Sbjct: 168 FLRTAEFL--WQEGHTAHASEAEAREETLRMLGVYAT-FARDFMAMPVLEGPKTASERFP 224

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 ++ E      + ++ G   + G  ++      F+  +  + +    S+G+ + R
Sbjct: 225 GAVDTYAI-EAMMQDRKALQAGTSHFLGQNFAKASGIKFQTKEETEEHAWTTSWGV-STR 282

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ---VCRDACEKIYARLSKVGC--- 377
           +V  +I +  D  G++ P  +AP  + ++ +   D       +  + +   L        
Sbjct: 283 LVGGLIMTHSDDDGLVLPPRLAPAHVVILPVYRGDDTRAKIDEYIDGLAKELRAQRFGER 342

Query: 378 --DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI--KHRLTGIREDMSLEE 433
             +V  D    + G +       G PL++ +G + V      +  + R    +  M+  E
Sbjct: 343 RVEVEIDRRDIRGGDKQWEWVKKGVPLRIEIGPRDVDAGVAMVMRRDRSPKDKSSMARGE 402

Query: 434 VINYASHRFSNNRPVL 449
           ++   +    + +  L
Sbjct: 403 LVGRVTEILGDIQATL 418


>gi|323466686|gb|ADX70373.1| Histidyl-tRNA synthetase [Lactobacillus helveticus H10]
          Length = 416

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 125/414 (30%), Gaps = 24/414 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R   NR    E+  P+ ++ +++  S     +   K+M    D+  + +   
Sbjct: 8   WQKVEETARNFFNRANYREIRTPSFENYEIFSRSSGDSSEIVEKQMYDFNDKGGRHIALR 67

Query: 108 PTHEEV--MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P          +           PF  + ++  FR E        R REF      SF  
Sbjct: 68  PEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYERPQAG---RQREFHQIGVESFGS 124

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT---GETQV 221
             P     +          +  +     I    +         H+ +V   T    E   
Sbjct: 125 SNPLADVQTIMMGHDLLGELGVKNYQLHINTLGDEQ--VRKGYHDALVNYFTPVKDELSE 182

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL--------FDSLPE 273
              +   D P+   ++  D          +        S  + E +         D + +
Sbjct: 183 DSQRRLRDNPLRILDSKDDRDKKFLPDAPKIRDFLNDNSKANFESILKMLDQLGIDYVID 242

Query: 274 NKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           +  V       G IF F     SL  SAT     G+  ++     G     V   + E  
Sbjct: 243 DDLVRGLDYYTGVIFEFMVEDKSLWESATTILGGGRYDHLVEEFNGPETPAVGFGIGEER 302

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      +   +     I    +       +I   L K G +  +D   +++  QF
Sbjct: 303 LMLVLEKQNPELFKNEGIDFFITNIGEGTAQKAIEIARSLRKQGFEADFDVNQKKLKGQF 362

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV--INYASHRFSN 444
             AD  G    + +G K +++  + IK    G   D+SLE++  +N       +
Sbjct: 363 KKADREGAKYVITLGEKELANGVLNIKRLADGKTIDLSLEDINDMNKVMKELKD 416


>gi|271963873|ref|YP_003338069.1| anticodon binding domain-containing protein [Streptosporangium
           roseum DSM 43021]
 gi|270507048|gb|ACZ85326.1| anticodon binding domain protein [Streptosporangium roseum DSM
           43021]
          Length = 461

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 61/438 (13%), Positives = 124/438 (28%), Gaps = 44/438 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +   NV     +     R   + +    + + ++W  SG  D++     E  
Sbjct: 35  WDYGPLGVELKSNVKRQWWKSMVQGRDDVVGLDSSVILAREVWQASGHVDTFTDPLTECQ 94

Query: 95  RLADRNDKAMIYGPTHE-----------EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
               R     +     E           ++      +         F+          E 
Sbjct: 95  ACHKRYRADHLEEAYEEKHGKPAVNGLADITCPNCGNKGSFTAPKQFSGLLKTYLGAVED 154

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G+   R    +  +   L  + S        +  +    R  +        +    
Sbjct: 155 --ESGLAYLRPETAQGIFINYLNVQQSARKKIPFGIGQIGKSFRNEITPGNFIFRTREFE 212

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                EF V   T E       D             D++       E+ +     T D+ 
Sbjct: 213 QMEM-EFFVKPGTDEEWHQYWIDERFRWYTDLGISQDNLRIYEHPQEKLSHYSKRTVDIE 271

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               F      +     G+     F      K S    + F+   G+ +   +     G 
Sbjct: 272 YRFNFTGSEWGELE---GVANRTDFDLTAHGKASGTDLSFFEQDTGERYVPYVIEPAAGV 328

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK---------------AHDQVCRDACE 366
            R   A +    D        +          ++               + +       +
Sbjct: 329 DR---ATLTFLLDAYTEDEAPNAKGVMEKRTVMRLDHRLAPVKVAVLPLSRNADLSPKAK 385

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + A+L +   +V +DD G  IG ++   D +G P  + V    + D  V I+ R +  +
Sbjct: 386 DLAAQLRRRW-NVEFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLDDQAVTIRERDSMAQ 443

Query: 427 EDMSLEEVINYASHRFSN 444
           E ++L++V  Y     ++
Sbjct: 444 ERVALDQVEAYLRQHLND 461


>gi|227495966|ref|ZP_03926277.1| glycine--tRNA ligase [Actinomyces urogenitalis DSM 15434]
 gi|226834454|gb|EEH66837.1| glycine--tRNA ligase [Actinomyces urogenitalis DSM 15434]
          Length = 469

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 61/434 (14%), Positives = 129/434 (29%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +   R+    + +    +   + WV SG   ++   ++   
Sbjct: 40  WDYGPLGVELKENIKRQWWQYMVRSRDDVVGLDSSVILPRETWVASGHVKAFTDPLIECT 99

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + + +      E            S             + +  E R   G++++    
Sbjct: 100 SCHKR-LREDELQEAYAAKHGIEDPDSVSLDQLVCPNCGTRGQFTEPRAFSGLLKTFLGP 158

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLSH 208
           + D          +       F + +    +         G            I      
Sbjct: 159 VDDEAGLHYLRPETAQGIFINFANVMSAARKKPPFGIGQVGKSFRNEITPGNFIFRTREF 218

Query: 209 E-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           E     F     T E       D+            D++       E+ +     T D+ 
Sbjct: 219 EQMELEFFCEPGTDEEWHQYWIDYRKAWYTGLGIKEDNLRLYEHPAEKLSHYSKRTVDLE 278

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGIGA 321
               F      +     GI     F   T   +S    + F     +     +     G 
Sbjct: 279 YRFGFQGSEWGELE---GIANRTDFDLSTHAEHSGKDLSYFDQTKNERWTPYVIEPSAGL 335

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       +AP K +++ +   +++     +++
Sbjct: 336 TRSLMAFLVEAYTEDEAPNTKGGVDTRVLLKLDPRLAPVKAAVLPLSRKEELTGP-AKEL 394

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ARL +   +V +DD G  +G ++   D +G P  +        D  V ++ R T  +E 
Sbjct: 395 AARLRRTW-NVDYDDAGA-VGRRYRRQDEIGTPFCITYDFDSPQDGAVTVRERDTMAQER 452

Query: 429 MSLEEVINYASHRF 442
           + LE V  Y + R 
Sbjct: 453 IPLEGVERYLAERL 466


>gi|294463365|gb|ADE77216.1| unknown [Picea sitchensis]
          Length = 215

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 70/216 (32%), Gaps = 15/216 (6%)

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
                 +     +       I E   A Y    D+    +FD+L    + +   ++    
Sbjct: 12  WQRAEAALTEALNAFGKPWQINEGDGAFYGPKIDI---TVFDALKRKFQCATIQLD---- 64

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F    ++ L  S        ++  V +    +G++  + A++   +              
Sbjct: 65  FQLPIRFDLSYSTE--DEAKRERPVMIHRAILGSVERMLAILLEHY------AGKWPFWL 116

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
                 +    +   D   ++  ++ + G  V  D    +I  +   A L  +   ++VG
Sbjct: 117 SPRQAIVCPVSEKSSDYALRVRDQIHQAGYYVDVDTSDRKIQKKIREAQLAQYNYILVVG 176

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +  +  +V ++ R     E  S++E++        
Sbjct: 177 EEEANTGQVSVRIRDKSAHEVRSMDELLKLFREEIE 212


>gi|15924621|ref|NP_372155.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927211|ref|NP_374744.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|21283310|ref|NP_646398.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483876|ref|YP_041100.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486464|ref|YP_043685.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650512|ref|YP_186525.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|82751229|ref|YP_416970.1| histidyl-tRNA synthetase [Staphylococcus aureus RF122]
 gi|87160141|ref|YP_494282.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195442|ref|YP_500246.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|148268111|ref|YP_001247054.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394179|ref|YP_001316854.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|151221745|ref|YP_001332567.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156979949|ref|YP_001442208.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509856|ref|YP_001575515.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141100|ref|ZP_03565593.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253317217|ref|ZP_04840430.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253732287|ref|ZP_04866452.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|255006416|ref|ZP_05145017.2| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425755|ref|ZP_05602179.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428415|ref|ZP_05604813.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431053|ref|ZP_05607432.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433739|ref|ZP_05610097.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436654|ref|ZP_05612698.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|257793704|ref|ZP_05642683.1| histidyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|258410997|ref|ZP_05681277.1| histidyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|258420202|ref|ZP_05683157.1| histidyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|258424056|ref|ZP_05686938.1| histidyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|258438204|ref|ZP_05689488.1| histidyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|258443667|ref|ZP_05692006.1| histidyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|258446874|ref|ZP_05695028.1| histidyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|258448788|ref|ZP_05696900.1| histidyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|258450543|ref|ZP_05698605.1| histidyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|258453606|ref|ZP_05701584.1| histidyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|262048624|ref|ZP_06021507.1| histidyl-tRNA synthetase [Staphylococcus aureus D30]
 gi|262051281|ref|ZP_06023505.1| histidyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|269203256|ref|YP_003282525.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282893135|ref|ZP_06301369.1| histidyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|282904211|ref|ZP_06312099.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282906037|ref|ZP_06313892.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908950|ref|ZP_06316768.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911267|ref|ZP_06319069.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914436|ref|ZP_06322222.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282916899|ref|ZP_06324657.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|282919405|ref|ZP_06327140.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282920180|ref|ZP_06327905.1| histidyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|282924729|ref|ZP_06332397.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282928266|ref|ZP_06335871.1| histidyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|283770705|ref|ZP_06343597.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|283958391|ref|ZP_06375842.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024687|ref|ZP_06379085.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132]
 gi|293503509|ref|ZP_06667356.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510527|ref|ZP_06669233.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|293531068|ref|ZP_06671750.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|294848660|ref|ZP_06789406.1| histidyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|295406752|ref|ZP_06816557.1| histidyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|295428206|ref|ZP_06820838.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275916|ref|ZP_06858423.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1]
 gi|297207649|ref|ZP_06924084.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245665|ref|ZP_06929530.1| histidyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|300911731|ref|ZP_07129174.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380772|ref|ZP_07363440.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|46397739|sp|P60909|SYH_STAAM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46397740|sp|P60910|SYH_STAAN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46397741|sp|P60911|SYH_STAAU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|48474731|sp|P60912|SYH_STAAW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|56749382|sp|Q6G8T8|SYH_STAAS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|56749411|sp|Q6GG72|SYH_STAAR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|71153563|sp|Q5HFD2|SYH_STAAC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123291784|sp|Q2FXU4|SYH_STAA8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123722375|sp|Q2FG96|SYH_STAA3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123740966|sp|Q2YT99|SYH_STAAB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166228618|sp|A7X345|SYH_STAA1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|172048922|sp|A6QHH3|SYH_STAAE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189082313|sp|A6U299|SYH_STAA2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189082314|sp|A5ITF5|SYH_STAA9 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189082315|sp|A8Z2F8|SYH_STAAT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|2580436|dbj|BAA23141.1| histidyl-tRNA synthetase [Staphylococcus aureus]
 gi|13701429|dbj|BAB42723.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|14247403|dbj|BAB57793.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204750|dbj|BAB95446.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49242005|emb|CAG40702.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244907|emb|CAG43368.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284698|gb|AAW36792.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|82656760|emb|CAI81189.1| histidyl-tRNA synthetase [Staphylococcus aureus RF122]
 gi|87126115|gb|ABD20629.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203000|gb|ABD30810.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|147741180|gb|ABQ49478.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946631|gb|ABR52567.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|150374545|dbj|BAF67805.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156722084|dbj|BAF78501.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368665|gb|ABX29636.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724076|gb|EES92805.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257271449|gb|EEV03595.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275256|gb|EEV06743.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278256|gb|EEV08898.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281832|gb|EEV11969.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284005|gb|EEV14128.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|257787676|gb|EEV26016.1| histidyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|257840147|gb|EEV64611.1| histidyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|257843913|gb|EEV68307.1| histidyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|257845677|gb|EEV69709.1| histidyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|257848248|gb|EEV72239.1| histidyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|257851073|gb|EEV75016.1| histidyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|257854449|gb|EEV77398.1| histidyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|257858066|gb|EEV80955.1| histidyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|257861701|gb|EEV84500.1| histidyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|257864337|gb|EEV87087.1| histidyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|259160918|gb|EEW45938.1| histidyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|259163271|gb|EEW47830.1| histidyl-tRNA synthetase [Staphylococcus aureus D30]
 gi|262075546|gb|ACY11519.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|269941116|emb|CBI49502.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TW20]
 gi|282313564|gb|EFB43959.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282317215|gb|EFB47589.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282319386|gb|EFB49738.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|282321617|gb|EFB51942.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282324962|gb|EFB55272.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327214|gb|EFB57509.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331329|gb|EFB60843.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590073|gb|EFB95155.1| histidyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|282594528|gb|EFB99513.1| histidyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|282595829|gb|EFC00793.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282764453|gb|EFC04579.1| histidyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|283460852|gb|EFC07942.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|283470907|emb|CAQ50118.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283790540|gb|EFC29357.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817313|gb|ADC37800.1| Histidyl-tRNA synthetase [Staphylococcus aureus 04-02981]
 gi|290920336|gb|EFD97402.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095175|gb|EFE25440.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466891|gb|EFF09411.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|294824686|gb|EFG41109.1| histidyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|294968499|gb|EFG44523.1| histidyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|295128564|gb|EFG58198.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887666|gb|EFH26564.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177316|gb|EFH36568.1| histidyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|298694910|gb|ADI98132.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300885977|gb|EFK81179.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302751459|gb|ADL65636.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340709|gb|EFM06641.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312437902|gb|ADQ76973.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH60]
 gi|312830017|emb|CBX34859.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315129915|gb|EFT85905.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315195533|gb|EFU25920.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315198669|gb|EFU28997.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140482|gb|EFW32336.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144021|gb|EFW35790.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|323440816|gb|EGA98525.1| histidyl-tRNA synthetase [Staphylococcus aureus O11]
 gi|323442835|gb|EGB00460.1| histidyl-tRNA synthetase [Staphylococcus aureus O46]
 gi|329314305|gb|AEB88718.1| Histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329727688|gb|EGG64144.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus 21172]
 gi|329728443|gb|EGG64880.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus 21189]
          Length = 420

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 60/413 (14%), Positives = 116/413 (28%), Gaps = 19/413 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   K    +   + E        E+  P  +S DL+        D   KEM    D+ 
Sbjct: 12  LPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKG 71

Query: 101 DKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           D+++   P     +        ++   N P   Y     FR E + +    +  +F ++ 
Sbjct: 72  DRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEA 131

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                  P         +   Y     +     I    +         +E +V       
Sbjct: 132 --IGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMAS--RKEYNEALVKHFEPVI 187

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIV-----------EQWTAPYAATSDVHNEKLF 268
             FCS                 +      +           E+  A Y       ++   
Sbjct: 188 HEFCSDCQSRLHTNPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKAYLDDLGI 247

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAA 327
             + +   V          F           A T     G+ + +     G     +  A
Sbjct: 248 PYIEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGIGFA 307

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +               +   +   + I            K+   L   G     D +  +
Sbjct: 308 LSIERLLLALEEEGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRK 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           I  Q   AD LG    +++G + + ++K+++K+  TG  E + L+ ++ Y   
Sbjct: 368 IKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK 420


>gi|15643847|ref|NP_228896.1| histidyl-tRNA synthetase [Thermotoga maritima MSB8]
 gi|7674351|sp|Q9X0H5|SYH_THEMA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|4981634|gb|AAD36166.1|AE001768_15 histidyl-tRNA synthetase [Thermotoga maritima MSB8]
          Length = 420

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 124/409 (30%), Gaps = 21/409 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R      G  E+  P  +  +L+V S     D   KEM    D+  +++   
Sbjct: 20  WRYVEETFRNVCESAGIEEIRTPIFEQTELFVRSVGEESDIVQKEMYTFQDKAGRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  +    R     +Y I   FR E        R R+F            
Sbjct: 80  PEGTAPVVRAFLENSLIDRGFQQRYYYIGPMFRYEKPQSG---RLRQFHQVGFEIIGPES 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCSK 225
             +      +  ++L    RLGL    +   S   P+      E +           C  
Sbjct: 137 PKADFEVIMLVDTFL---RRLGLTKYKIHLNSIGCPVCRKNYREALKEYYGRILDNLCDD 193

Query: 226 DFMDFPIPSENTDFDDI---------ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
               +           +          S++ + +   A Y    +  N    + + ++  
Sbjct: 194 CKRRYETNILRLLDCKVDHEYSLNAPKSVDYLCDSCRAHYKKLKEYLNTFEIEYVEDHTL 253

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V  RG++      F  ++    + +     G+   +     G     +  A         
Sbjct: 254 V--RGLDYYTRTVFEVRHEGLGAQSAIAGGGRYDGLFAELGGSSVPALGFAGGIERIILA 311

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                  +    + L+ I    +       ++   L K G  V  D M  ++  Q   A 
Sbjct: 312 LKAEGIEIPMKNVHLVYIATLGEKAFMDGVRLAGELRKKGLSVDVDIMDRKLSGQLKHAS 371

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +G    VI+G + +    V ++   TG + ++  +   +Y + R S +
Sbjct: 372 RMGSRYAVIIGDEELEKGIVILRDLETGDQVEIDRDFAADYIAERVSKD 420


>gi|20093592|ref|NP_613439.1| glycyl-tRNA synthetase [Methanopyrus kandleri AV19]
 gi|34395858|sp|Q8TYY9|SYG_METKA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|19886451|gb|AAM01369.1| Glycyl-tRNA synthetase, class II [Methanopyrus kandleri AV19]
          Length = 571

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 73/457 (15%), Positives = 146/457 (31%), Gaps = 78/457 (17%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
           + +  +IRE        ++  P     +L   +     +   +     R     +   T 
Sbjct: 117 EELEDLIREH-------DLRCPECG-GELAEVTEFNLMFDTNIGPKEGRTG--YLRPETA 166

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
           + +       +  + + LPF   QI   +R+E+ PR GV+R REF   +A  F    E  
Sbjct: 167 QAIFIQFKDLYRWARQKLPFGVVQIGRAYRNEISPRQGVIRLREFTQAEAEVFFDPEEKE 226

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
              + +     L+ +     +             +   E +V    G       +   + 
Sbjct: 227 YPGFERYADEVLKFYPIEEQRKENGE-MLEMSVREAVEEGMVSQPIGYFLGLTKRMLNEM 285

Query: 231 PIPSENT----------------DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            +P+E                   +D  + L           A  +D   +K  +   E+
Sbjct: 286 GVPNEAIRSRQHLPEERAHYASDCWDVEVKLERFGWVEVVGIADRTDYDLKKHSEHSGED 345

Query: 275 KRVSARGIEVGHIFYFGTKYSL------------------PMSATFKGA----------- 305
              + R +E   I Y                          ++A  +             
Sbjct: 346 -LRAFRELEEPKIVYRPEPVMKELGPRFKSDAPKIAEALRRITAESEDELKGGLTVEVDG 404

Query: 306 -----------------DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--IIWPDSVAP 346
                             G+  Y  +     G  R++  V+E + D +     +P  +AP
Sbjct: 405 KEVEVPPECYEIVKEKVTGERFYPHVIEPSYGIDRILYCVLEHNFDPEEGVFRFPAWLAP 464

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            ++ +  +     +  +   ++   L + G  V +DD G  IG ++A AD +G P  V V
Sbjct: 465 IEVGVFPLLKRSDMV-EYARRVARMLREEGFTVEYDDSG-SIGRRYARADEIGVPYCVTV 522

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             + + D  V I+ R T  +  + ++E+ +       
Sbjct: 523 DHETLEDDTVTIRDRDTTEQVRVEVDELADVLRGLID 559



 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 99/357 (27%), Gaps = 33/357 (9%)

Query: 28  RTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLW 80
           R G I         ++G Y + PLG      +    RE   ++ G +E+  P L   +++
Sbjct: 15  RRGFILPAFRIYGGARGFYDYGPLGALLKRKIEEKWREYYVHKEGFMEIEAPNLLIGEVF 74

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             SG  + +   M   ++  +         EE+  D      +   +L         +  
Sbjct: 75  EASGHVEHFIDPMTHCSECGEFFRADHLAEEELGVDAEGMSPEELEDLIREHDLRCPECG 134

Query: 141 DE--LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRA 197
            E      F +M       K+  +  L PE ++  + +    Y     +         RA
Sbjct: 135 GELAEVTEFNLMFDTNIGPKEGRTGYLRPETAQAIFIQFKDLYRWARQKLPFGVVQIGRA 194

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
               I        +      E +VF   +  ++  P      D+++    I EQ      
Sbjct: 195 YRNEISPRQGVIRLREFTQAEAEVFFDPEEKEY--PGFERYADEVLKFYPIEEQRK---- 248

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
              ++    + +++ E       G  +G                     G  +       
Sbjct: 249 ENGEMLEMSVREAVEEGMVSQPIGYFLGLTKRM------------LNEMGVPNEAIRSRQ 296

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            +   R   A      D   +        +   +      D   +   E     L  
Sbjct: 297 HLPEERAHYAS-----DCWDVEVKLERFGWVEVVGIADRTDYDLKKHSEHSGEDLRA 348


>gi|50954005|ref|YP_061293.1| glycyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71657968|sp|Q6AHF7|SYG_LEIXX RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|50950487|gb|AAT88188.1| glycyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 463

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 66/442 (14%), Positives = 132/442 (29%), Gaps = 51/442 (11%)

Query: 40  YSWLPLGQKALDNVNA-----IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY----G 90
           + + PLG +  +N+        +R   +  G   +    +    +W  SG    +     
Sbjct: 35  WDYGPLGVELKENIKREWWNSFVRGRGDMVG---LDSAIILPTAVWEASGHVKVFSDPLT 91

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           + ++         +      E            +  + P    Q         RP  G+M
Sbjct: 92  ESLITHKRYRADHLFEAYEAEHGHPPANGLDDIADPDHPEKVGQWTPI-----RPFSGLM 146

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPI 202
           ++   ++ D          +       F S L+   +         G            I
Sbjct: 147 KTYLGIVDDESGLHYMRPETAQGIFTDFASVLQTSRKKPPFGIGQIGKAFRNEITPGNFI 206

Query: 203 GGDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                 E     F V   T E       D             ++I       +       
Sbjct: 207 FRTREFEQMEIEFFVEPGTDEEWFDTWIDLSWEWFTGLGIKPENIRRFEHPKDSLAHYSK 266

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMG 315
            T D+  +  F      + +   G+     F   T   +S    + F     + +   + 
Sbjct: 267 RTIDIEYKFEFAGSEWGELM---GVANRADFDLKTHIEHSGKDLSYFDQNKNERYVPFVI 323

Query: 316 SYGIGAMRVVAAVIESSHDGKGI-------------IWPDSVAPFKISLINIKAHDQVCR 362
               G  R + A +  ++D +                    +AP K++++ + + ++   
Sbjct: 324 EPSFGLTRALMAFLVDAYDEEQAPNAKGGTDKRTVLHLDPRLAPVKVAVLPL-SRNEALS 382

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                +  RL +    V +DD G  IG ++   D +G PL V V    + D  V ++ R 
Sbjct: 383 PLARGLADRLRQRRA-VDFDDSGA-IGRRYRREDEIGTPLAVTVDFDSLEDDAVTVRDRD 440

Query: 423 TGIREDMSLEEVINYASHRFSN 444
           +  +E + LE +  Y + R   
Sbjct: 441 SMRQERIPLEGLDRYLAERLRE 462


>gi|298694847|gb|ADI98069.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED133]
          Length = 463

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 61/443 (13%), Positives = 139/443 (31%), Gaps = 55/443 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN-----RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +NV     ++         G   +    L +  +W  SG  +++   M+
Sbjct: 32  WDYGPLGVELKNNVKKAWWQKFITQSPFNVG---IDAAILMNPKVWEASGHLNNFNDPMI 88

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D +          E+ M D+          L F   +  +     + P        E
Sbjct: 89  DNKD-SKIRYRADKLIEDYMQDVKGDENFIADGLSFEQMKKIIDDEGIVCPVSKTANWTE 147

Query: 155 ---FLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFH-----------------RL 188
              F +       +T + +   +        +FV+Y  +                   R 
Sbjct: 148 IRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRN 207

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +        +          F    +  E Q +      D+          + + L   
Sbjct: 208 EITPGNFIFRTREFEQMELEFFCKPGEEIEWQNYWKTFASDWLT--SLNMNSENMRLRDH 265

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   + Y+  +     K      E   +++R            ++S            +
Sbjct: 266 DEDELSHYSNATTDIEYKFPFGWGELWGIASRTDFDLRKH---AEHSGEDFRYHDPETNE 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHD----------GKGIIWPDSVAPFKISLINIKAHD 358
            +        +GA RV  A +  ++D             + +  ++AP+K +++ +    
Sbjct: 323 KYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKK- 381

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   KI+ +LS     + +D+  + IG ++   D +G P  V      + D++V +
Sbjct: 382 --LSGEAIKIFEQLSSK-FSIDFDES-QSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTV 437

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R +  +  M + E+  + + +
Sbjct: 438 RDRDSMEQVRMPISELEAFLTEK 460


>gi|15924555|ref|NP_372089.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927145|ref|NP_374678.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|21283246|ref|NP_646334.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483813|ref|YP_041037.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486400|ref|YP_043621.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651958|ref|YP_186462.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87161756|ref|YP_494220.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195373|ref|YP_500177.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|148268049|ref|YP_001246992.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394117|ref|YP_001316792.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|151221680|ref|YP_001332502.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156979883|ref|YP_001442142.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509793|ref|YP_001575452.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140015|ref|ZP_03564508.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253314936|ref|ZP_04838149.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253732218|ref|ZP_04866383.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733185|ref|ZP_04867350.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006351|ref|ZP_05144952.2| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425690|ref|ZP_05602114.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428351|ref|ZP_05604749.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430988|ref|ZP_05607368.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433676|ref|ZP_05610034.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436590|ref|ZP_05612634.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|257793641|ref|ZP_05642620.1| glycyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|258411059|ref|ZP_05681339.1| glycyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|258420137|ref|ZP_05683092.1| glycyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|258437397|ref|ZP_05689381.1| glycyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|258443603|ref|ZP_05691942.1| glycyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|258446810|ref|ZP_05694964.1| glycyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|258448724|ref|ZP_05696836.1| glycyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|258450606|ref|ZP_05698668.1| glycyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|258453541|ref|ZP_05701519.1| glycyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|262049140|ref|ZP_06022017.1| glycyl-tRNA synthetase [Staphylococcus aureus D30]
 gi|262051164|ref|ZP_06023388.1| glycyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|269203193|ref|YP_003282462.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282893066|ref|ZP_06301300.1| glycyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|282904147|ref|ZP_06312035.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282905974|ref|ZP_06313829.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908884|ref|ZP_06316702.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911203|ref|ZP_06319005.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914372|ref|ZP_06322158.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282916835|ref|ZP_06324593.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|282919341|ref|ZP_06327076.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282920114|ref|ZP_06327839.1| glycyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|282924666|ref|ZP_06332334.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282928198|ref|ZP_06335803.1| glycyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|283770641|ref|ZP_06343533.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|283958329|ref|ZP_06375780.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024624|ref|ZP_06379022.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132]
 gi|293503446|ref|ZP_06667293.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510463|ref|ZP_06669169.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|293531003|ref|ZP_06671685.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|294848596|ref|ZP_06789342.1| glycyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|295406688|ref|ZP_06816493.1| glycyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|295428143|ref|ZP_06820775.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275813|ref|ZP_06858320.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1]
 gi|297207716|ref|ZP_06924151.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245730|ref|ZP_06929595.1| glycyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|297590891|ref|ZP_06949529.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|300911797|ref|ZP_07129240.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380846|ref|ZP_07363506.1| glycyl-tRNA synthetase beta subunit [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|54039670|sp|P67035|SYG_STAAW RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|54039676|sp|P99129|SYG_STAAN RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|54042030|sp|P67034|SYG_STAAM RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|56749385|sp|Q6G902|SYG_STAAS RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|56749414|sp|Q6GGD5|SYG_STAAR RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|71153560|sp|Q5HFJ5|SYG_STAAC RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|123291788|sp|Q2FY08|SYG_STAA8 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|123749609|sp|Q2FGF8|SYG_STAA3 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|166227939|sp|A7X2W2|SYG_STAA1 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|172048905|sp|A6QHA8|SYG_STAAE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|189082278|sp|A6U237|SYG_STAA2 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|189082279|sp|A5IT93|SYG_STAA9 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|189082280|sp|A8Z4A4|SYG_STAAT RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|13701363|dbj|BAB42657.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|14247336|dbj|BAB57727.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204686|dbj|BAB95382.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49241942|emb|CAG40637.1| putative glycyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49244843|emb|CAG43304.1| putative glycyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57286144|gb|AAW38238.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87127730|gb|ABD22244.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202931|gb|ABD30741.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|147741118|gb|ABQ49416.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946569|gb|ABR52505.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|150374480|dbj|BAF67740.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156722018|dbj|BAF78435.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368602|gb|ABX29573.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724007|gb|EES92736.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728725|gb|EES97454.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257271384|gb|EEV03530.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275192|gb|EEV06679.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278418|gb|EEV09054.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281769|gb|EEV11906.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410]
 gi|257283941|gb|EEV14064.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|257787613|gb|EEV25953.1| glycyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|257840209|gb|EEV64673.1| glycyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|257843848|gb|EEV68242.1| glycyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|257848602|gb|EEV72590.1| glycyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|257851009|gb|EEV74952.1| glycyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|257854385|gb|EEV77334.1| glycyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|257858002|gb|EEV80891.1| glycyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|257861764|gb|EEV84563.1| glycyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|257864272|gb|EEV87022.1| glycyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|259160801|gb|EEW45821.1| glycyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|259162809|gb|EEW47374.1| glycyl-tRNA synthetase [Staphylococcus aureus D30]
 gi|262075483|gb|ACY11456.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|269941055|emb|CBI49439.1| putative glycyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282313501|gb|EFB43896.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282317151|gb|EFB47525.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282319322|gb|EFB49674.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|282321553|gb|EFB51878.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282324898|gb|EFB55208.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327148|gb|EFB57443.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331266|gb|EFB60780.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590005|gb|EFB95087.1| glycyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|282594462|gb|EFB99447.1| glycyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|282595765|gb|EFC00729.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282764384|gb|EFC04510.1| glycyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|283460788|gb|EFC07878.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|283470843|emb|CAQ50054.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ST398]
 gi|283790478|gb|EFC29295.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817247|gb|ADC37734.1| Glycyl-tRNA synthetase [Staphylococcus aureus 04-02981]
 gi|290920271|gb|EFD97337.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095112|gb|EFE25377.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466827|gb|EFF09347.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|294824622|gb|EFG41045.1| glycyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|294968435|gb|EFG44459.1| glycyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|295128501|gb|EFG58135.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887733|gb|EFH26631.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177381|gb|EFH36633.1| glycyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|297575777|gb|EFH94493.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|300886043|gb|EFK81245.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333241|gb|ADL23434.1| putative glycyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|302751396|gb|ADL65573.1| putative glycyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340573|gb|EFM06507.1| glycyl-tRNA synthetase beta subunit [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312829953|emb|CBX34795.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315129843|gb|EFT85833.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195467|gb|EFU25854.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198740|gb|EFU29068.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140550|gb|EFW32404.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144087|gb|EFW35856.1| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|323440463|gb|EGA98175.1| glycyl-tRNA synthetase [Staphylococcus aureus O11]
 gi|323443237|gb|EGB00855.1| glycyl-tRNA synthetase [Staphylococcus aureus O46]
 gi|329727248|gb|EGG63704.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus 21172]
 gi|329728442|gb|EGG64879.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus 21189]
 gi|329733064|gb|EGG69401.1| glycine--tRNA ligase [Staphylococcus aureus subsp. aureus 21193]
          Length = 463

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 61/443 (13%), Positives = 139/443 (31%), Gaps = 55/443 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN-----RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +NV     ++         G   +    L +  +W  SG  +++   M+
Sbjct: 32  WDYGPLGVELKNNVKKAWWQKFITQSPFNVG---IDAAILMNPKVWEASGHLNNFNDPMI 88

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D +          E+ M D+          L F   +  +     + P        E
Sbjct: 89  DNKD-SKIRYRADKLIEDYMQDVKGDENFIADGLSFEQMKKIIDDEGIVCPVSKTANWTE 147

Query: 155 ---FLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFH-----------------RL 188
              F +       +T + +   +        +FV+Y  +                   R 
Sbjct: 148 IRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRN 207

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +        +          F    +  E Q +      D+          + + L   
Sbjct: 208 EITPGNFIFRTREFEQMELEFFCKPGEEIEWQNYWKTFASDWLT--SLNMSSENMRLRDH 265

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   + Y+  +     K      E   +++R            ++S            +
Sbjct: 266 DEDELSHYSNATTDIEYKFPFGWGELWGIASRTDFDLRKH---AEHSGEDFRYHDPETNE 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHD----------GKGIIWPDSVAPFKISLINIKAHD 358
            +        +GA RV  A +  ++D             + +  ++AP+K +++ +    
Sbjct: 323 KYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKK- 381

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   KI+ +LS     + +D+  + IG ++   D +G P  V      + D++V +
Sbjct: 382 --LSGEAIKIFEQLSSK-FSIDFDES-QSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTV 437

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R +  +  M + E+  + + +
Sbjct: 438 RDRDSMEQVRMPISELEAFLTEK 460


>gi|71991346|ref|NP_001022778.1| Prolyl tRNA Synthetase family member (prs-1) [Caenorhabditis
           elegans]
 gi|51988138|gb|AAU20840.1| Prolyl trna synthetase protein 1, isoform b [Caenorhabditis
           elegans]
          Length = 454

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 62/399 (15%), Positives = 117/399 (29%), Gaps = 69/399 (17%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ-SADLWVESGR 85
           +  MI  +   G Y   P      +++         + G      P    +A L  E   
Sbjct: 109 KAEMIEYYDVSGCYVLRPWSFAVWESIQEWFDSGIKKLGVKNCYFPMFVSNAALEREKTH 168

Query: 86  YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
              +  E+  +    +  M       PT E VM   ++  ++S+R+LP    Q     R 
Sbjct: 169 IADFAPEVAWVTRAGNSEMAEPIAIRPTSETVMYPSYKKWVQSHRDLPIKLNQWCNVVR- 227

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                       EF          TP      +              G  +    A+   
Sbjct: 228 -----------WEF-------KHPTPFLRTREFLWQ----------EGHTAFANPAD--- 256

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                           E +VF   D                   +   +     +  T +
Sbjct: 257 ---------------AEKEVFQILDLYAGVYTDLLAIPVVKGRKSEKEKFAGGDFTTTVE 301

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG- 320
            +              + RGI+     + G  +S     +++    +           G 
Sbjct: 302 AYVA-----------CNGRGIQGATSHHLGQNFSKMFDISYEDPAKEGERAFAWQNSWGL 350

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSKVGC 377
           + R + A++    D KG++ P  VA  ++ ++ +       Q   DA +K+   L   G 
Sbjct: 351 STRTIGAMVMIHGDDKGLVLPPRVAAVQVIVVPVGFKTENKQSLFDAVDKVTKDLVADGV 410

Query: 378 DVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
               D       G +F   +L G P++  VG   ++ ++
Sbjct: 411 KAEHDLRENYNAGWKFNHWELKGVPIRFEVGPNDLAKNQ 449


>gi|299535679|ref|ZP_07049000.1| histidyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298728879|gb|EFI69433.1| histidyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 422

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 58/405 (14%), Positives = 113/405 (27%), Gaps = 16/405 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V AIIR+        E+  P  +  DL+        D   KEM    DR  +++   
Sbjct: 20  WQKVEAIIRDICRVYRYNEIRTPIFEQTDLFARGVGETTDVVQKEMYTFEDRGGRSLTLR 79

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDL 165
           P +   +        +    + P     +   FR E +      R R+F+          
Sbjct: 80  PENTAGVVRAYVEHKMFGAPDQPVKLSYLGPMFRYERQQAG---RYRQFVQFGVEAIGSA 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE-FIVLADTGETQVFCS 224
            P             Y     +     I    +        +           E    C 
Sbjct: 137 DPAIDAEVIALAMDVYESAGLKDLKLVINSLGDKETRDTHRTALLQHFEPHIHEFCSDCQ 196

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENKR 276
                 P+   +   D    L       T      S  +  ++   L         +   
Sbjct: 197 NRLQKNPLRILDCKVDREHPLMQTAPALTDFLTEESAGYFTQVKSYLDTLGISYEVDPNL 256

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V          F   +  S   + T     G+ + +     G     +  A+        
Sbjct: 257 VRGLDYYNHTTFEIMSTASGFGAITTLCGGGRYNGLVQEIGGPDVPGIGFALSIERLLLA 316

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                  +       + I A     +    ++ +     G     D +  ++ +Q   AD
Sbjct: 317 LEAEGVELDTASGLDVYIIAMGDEAKQKAVELTSTFRAKGLATEMDYLDRKMKAQMKSAD 376

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            LG    +++G   + +    +KH  +G +  ++  E++NY +H+
Sbjct: 377 RLGAKYTLVLGETELEEQAAAVKHMESGEQHKVAFSELVNYLTHK 421


>gi|317472458|ref|ZP_07931781.1| glycyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
 gi|316900076|gb|EFV22067.1| glycyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
          Length = 463

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 61/443 (13%), Positives = 132/443 (29%), Gaps = 51/443 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG    +   +
Sbjct: 32  WDYGNLGVELKNNVKKAWWKKFI----QESPYNVGVDCAILMNPQTWVASGHLGGFSDPL 87

Query: 94  LRLADRNDK---AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           +   + +++     I     +E   +I    +  +       +            +    
Sbjct: 88  MDCKECHERFRADKIIEDYMDEHGMEIEGGSVDGWTKEEMVDFINDHDIVCPSCGKKNFT 147

Query: 151 RSREFLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSI 193
             REF +       +T +     Y                             ++G    
Sbjct: 148 DIREFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQVGKSFR 207

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQ--VFCSKDFMDFPIPSENT--DFDDIISLNSIV 249
                          E + L    E    +     + +F I    T    DD + +    
Sbjct: 208 NEITPGNFTFRTREFEQMELEFFCEPDTDLEWFAYWKEFCINWLKTLGITDDQMRVRDHG 267

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           ++  + Y+  +            E   ++ R              S      F     + 
Sbjct: 268 KEELSFYSKATSDIEFLFPFGWGELWGIADRTDYDLTQHQ---NTSGEDLTYFDDEKKER 324

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQV 360
           +   +    +GA RV  A + +++D + +          +  ++AP KI ++ +      
Sbjct: 325 YIPYVIEPSLGADRVTLAFLCAAYDEEELEGGDKRTVLRFHPAIAPVKIGVLPLSKK--- 381

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   K+Y  L     +  +D+ G  IG ++   D +G P  V        D  V ++ 
Sbjct: 382 LAEGAGKVYETL-AKYYNCEYDERG-NIGKRYRRQDEIGTPFCVTYDFDSEEDGAVTVRD 439

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +E + +E++  Y   +F 
Sbjct: 440 RDTMEQERVKIEDLKEYFEKKFD 462


>gi|302333304|gb|ADL23497.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 420

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 63/413 (15%), Positives = 121/413 (29%), Gaps = 19/413 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   K    +   + E        E+  P  +S DL+        D   KEM    D+ 
Sbjct: 12  LPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKG 71

Query: 101 DKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           D+++   P     +        ++   N P   Y     FR E + +    +  +F ++ 
Sbjct: 72  DRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEA 131

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD---T 216
                  P         +   Y     +     I    +         +E +V       
Sbjct: 132 --IGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMAS--RKEYNEALVKHFEPVI 187

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--- 273
            E    C       P+   +   D          + T      S  + E++   L +   
Sbjct: 188 HEFCSDCQSRLHTNPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKAYLDDLGI 247

Query: 274 ---NKRVSARGIEV--GHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAA 327
                    RG++      F           A T     G+ + +     G     +  A
Sbjct: 248 AYIEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGIGFA 307

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +               +   +   + I            K+   L   G     D +  +
Sbjct: 308 LSIERLLLALEEEGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRK 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           I  Q   AD LG    +++G + + ++K+++K+  TG  E + L+ ++ Y   
Sbjct: 368 IKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK 420


>gi|295692848|ref|YP_003601458.1| histidyl-tRNA synthetase [Lactobacillus crispatus ST1]
 gi|295030954|emb|CBL50433.1| Histidyl-tRNA synthetase [Lactobacillus crispatus ST1]
          Length = 428

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 131/424 (30%), Gaps = 20/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    +   V    R   NR    E+  P+ ++ +++  S     +   K+M  
Sbjct: 8   GTVDILPDQSGSWQKVEETARNFFNRANYREIRTPSFENYEIFARSSGDSSEIVEKQMYD 67

Query: 96  LADRNDKAMIYGPTHEEV--MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P          +           PF  + ++  FR E        R R
Sbjct: 68  FDDKGGRHIALRPEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF  +   S      M           +Y    + LG + +        +  
Sbjct: 125 EFHQIGVESFGSSNPLSDVQTIMMGHDLLGELGVKNYQLHINTLGNEQVRQDYHDALVNY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVH 263
               +  +  D+           +D     +         +   ++    A + A   + 
Sbjct: 185 FTPLKDELSEDSQRRLRDNPLRILDSKDERDKKFLPKAPKIREFLDDDSKANFEAILKML 244

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           ++   D + ++  V       G IF F     SL  SAT     G+  ++     G    
Sbjct: 245 DQLGIDYVIDDDLVRGLDYYTGIIFEFMVKDKSLWESATTILGGGRYDHLVEEFNGPATP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E            ++   +     I            +I   L   G +  +D
Sbjct: 305 AVGFGIGEERLMLVLEKQNPALFEKRGIDFFITNIGDGTAQKAIEIARSLRNQGFEADFD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV--INYASH 440
              +++ +QF  AD  G    + +G K +++  + IK    G   D+SLE++  +     
Sbjct: 365 VNQKKLKNQFKKADREGAKYVITLGEKELANGVLNIKRLADGKTIDLSLEDLNNMTKIMD 424

Query: 441 RFSN 444
              +
Sbjct: 425 ELKD 428


>gi|289193291|ref|YP_003459232.1| glycyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
 gi|288939741|gb|ADC70496.1| glycyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
          Length = 577

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 90/281 (32%), Gaps = 11/281 (3%)

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                 Y            R G       A+               +    +      + 
Sbjct: 304 PNEMAHYAIDCWDAEIYTERFGWIECVGIADRTDYDLRSH---SAHSGVELSVFVEFDEP 360

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            +      N ++  +  +     +    Y    D    + F    E        I+ G  
Sbjct: 361 KEIETYEINLNYKVVGRIFKKDTKAIEAYINNLDERALEEFVKTLEKDGKITINID-GKE 419

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH----DGKGIIWPDS 343
           F    K  + +    K   G+     +     G  R+   ++E S+    D   +    S
Sbjct: 420 FEI-LKDYVEIKKVKKVIKGEKVIPHVIEPSYGIDRITYCLLEHSYREEEDRVYLDLKPS 478

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP K  ++ +    +      ++I   L + G    +DD G  IG ++  AD +G P  
Sbjct: 479 IAPIKAYVLPLVNK-EDMPKIAKEIEKMLRENGIIAEYDDSGA-IGRRYMRADEIGVPFC 536

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + V  + + D  V ++ R T  +  + ++E+++Y   +  +
Sbjct: 537 ITVDGQTLKDKTVTVRERNTREQVRVKIDELVDYLKEKLKD 577



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 1/107 (0%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G   + PLG    +N+ +  RE+   + G  E+  PT+   ++   SG  D++   ++ 
Sbjct: 30  AGFVDYGPLGCLLKNNIISKFREQYIVKEGFYEIESPTVTPYEVLKASGHVDNFTDPIVE 89

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
             +  +         E V  D     +K    L         K   E
Sbjct: 90  CKNCLESFRADHLIEEFVDVDTEGKTLKELEELIRKHNIRCPKCGGE 136


>gi|242242903|ref|ZP_04797348.1| histidyl-tRNA synthetase [Staphylococcus epidermidis W23144]
 gi|242233618|gb|EES35930.1| histidyl-tRNA synthetase [Staphylococcus epidermidis W23144]
          Length = 424

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 62/407 (15%), Positives = 126/407 (30%), Gaps = 19/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   +          E+  P  +S +L+        D   KEM    D+  +++   
Sbjct: 19  WRYIENRLHTLMELYNYKEIRTPIFESTELFARGVGDSTDVVQKEMYTFKDKGGRSLTLR 78

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +        ++   N P   Y     FR E + +    +  +F ++        
Sbjct: 79  PEGTAAVVRSYIEHKMQGEPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEA--IGAEN 136

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P         +   Y     +     I    +S        +E +V         FCS  
Sbjct: 137 PSIDAEILAMVMHIYESFGLKHLKLVINSIGDSES--RKEYNEALVKHFEPVIDTFCSDC 194

Query: 227 ----------FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN-K 275
                      +D  I  +     +   +   +   +  Y     +H + L  S  E+  
Sbjct: 195 QSRLHTNPMRILDCKIDRDKEAVKNAPRITDYLNNDSKSYYEQVKLHLDNLNISYVEDPN 254

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            V          F           A T     G+ + +     G     +  A+      
Sbjct: 255 LVRGLDYYTHTAFELMIDNPEYDGAITTLCGGGRYNGLLQLLDGPDETGIGFALSIERLL 314

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                   S+   +   + +    +       K+   L + G  V  D +  +I  Q   
Sbjct: 315 MALDEEGISLDVSEDFDLFVVTMGEDADRYAVKLINDLRRNGIKVDKDYLNRKIKGQMKQ 374

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           AD L     V++G + + ++++ +K+ ++G  E++ L+E+INY  +R
Sbjct: 375 ADRLNAKYTVVIGDQELENNEIGVKNMISGETENVQLDELINYFKNR 421


>gi|184201296|ref|YP_001855503.1| glycyl-tRNA synthetase [Kocuria rhizophila DC2201]
 gi|183581526|dbj|BAG29997.1| glycyl-tRNA synthetase [Kocuria rhizophila DC2201]
          Length = 460

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 67/464 (14%), Positives = 146/464 (31%), Gaps = 66/464 (14%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNA-----IIREEQNRTGAIEMSVPTLQS 76
           R G + Q      G    + + PLG +  +N+        +R   +  G   +    +  
Sbjct: 16  RRGFVFQAGEIYGGSRSAWDYGPLGAELKENIKREWWQTFVRGRADMVG---LDSSIILP 72

Query: 77  ADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
           + +W  SG  +++   ++      +  +A      +E        + +   ++       
Sbjct: 73  SAVWQASGHVETFTDPLVESLHTHKRYRADHLLEAYEAKHGHPPVNGLADVKDPETGQDG 132

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH-------- 186
                  E +   G+M++    + +          +       F++ +            
Sbjct: 133 KWT----EPQQFSGLMKTFLGPVDNEEGKHFLRPETAQGIFVNFLNVVTAARKKPPFGIG 188

Query: 187 ------RLGLKSIPMRAESGPIGGDLSHEFIVLADTG----ETQVFCSKDFMDFPIPSEN 236
                 R  +        +          FI   +      E    C   F+D  +  +N
Sbjct: 189 QIGKAFRNEITPGNFIFRTREFEQMEIEYFIHPDEAKKYFDEWVEACWDWFVDLGVNPDN 248

Query: 237 TDFDDIISLNSIVEQWTAPYA-ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--TK 293
               D+ + +       A Y+  T D+     F      + +   G+     F     T+
Sbjct: 249 MRRYDVPADDR------AHYSDGTIDIEYRFGFQGSEWGELM---GVANRTDFDLSNHTE 299

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKGIIW 340
            S      F  A G+ +   +     G  R + A +  ++                 +  
Sbjct: 300 ASGTKMQYFDQASGERYTPYVIEPSFGLTRSMMAFLVDAYVEDEAPNTKGGVDTRTVLRL 359

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              +AP K +++ +    +  R   + + A L +   ++ +DD G  IG ++   D +G 
Sbjct: 360 DPRLAPVKAAVLPLSKK-EDLRPTAQHLDAELRRRW-NIDYDDAGA-IGRRYRRQDEIGT 416

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           P  + V    + D  V I+ R    +E + L+ V  Y + R   
Sbjct: 417 PFCITVDFDTLEDQAVTIRSRDEMTQERVGLDRVQQYLAERLEK 460


>gi|148270774|ref|YP_001245234.1| histidyl-tRNA synthetase [Thermotoga petrophila RKU-1]
 gi|166228627|sp|A5IN85|SYH_THEP1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|147736318|gb|ABQ47658.1| histidyl-tRNA synthetase [Thermotoga petrophila RKU-1]
          Length = 420

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 61/407 (14%), Positives = 118/407 (28%), Gaps = 17/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R      G  E+  P  +  +L+V S     D   KEM    D+  +++   
Sbjct: 20  WRYVEETFRNVCESAGIEEIRTPIFEQTELFVRSVGEESDIVQKEMYTFQDKAGRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  +    R     +Y I   FR E        R R+F            
Sbjct: 80  PEGTAPVVRAFLENSLIDRGFQQRYYYIGPMFRYEKPQSG---RLRQFHQVGFEIIGSES 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHEFIVLADTGETQVFCSK 225
             +      +  ++L    +LGL    +   S           E +           C  
Sbjct: 137 PKADFEVIMLVDTFL---RKLGLTKYRIHLNSIGCSACRKNYREALKEYYGQILANLCDD 193

Query: 226 DFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDSLPE------NKRVS 278
               +           +    +    +       +   H EKL + L             
Sbjct: 194 CKRRYETNILRLLDCKVDHEYALNAPKSVDYLCDSCKTHYEKLKEYLNTFEIEYVEDHTL 253

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RG++      F  ++    +       G+   + +   G     +  A           
Sbjct: 254 VRGLDYYTRTVFEVRHEGLGAQNTIAGGGRYDGLFVELGGSSVPALGFAGGIERIILALK 313

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +    + L+ +    +       ++   L K G  V  D M  ++  Q   A  +
Sbjct: 314 AEEIEIPIKNVHLVYVVTLGEKAFADGVQLAVELRKKGLSVDVDIMDRKLSGQLKHAHRM 373

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G    VI+G + +    V ++   TG + ++  +  ++Y + R S +
Sbjct: 374 GSRYAVIIGDEELEKGIVILRDLETGDQVEVDRDFAVDYIAERVSKD 420


>gi|253733118|ref|ZP_04867283.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728874|gb|EES97603.1| histidyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 420

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 60/413 (14%), Positives = 116/413 (28%), Gaps = 19/413 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   K    +   + E        E+  P  +S DL+        D   KEM    D+ 
Sbjct: 12  LPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKG 71

Query: 101 DKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           D+++   P     +        ++   N P   Y     FR E + +    +  +F ++ 
Sbjct: 72  DRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEA 131

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                  P         +   Y     +     I    +         +E +V       
Sbjct: 132 --IGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMAS--RKEYNEALVKHFEPVI 187

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIV-----------EQWTAPYAATSDVHNEKLF 268
             FCS                 +      +           E+  A Y       ++   
Sbjct: 188 HEFCSDCQSRLHTNPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKAYLDDLDI 247

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAA 327
             + +   V          F           A T     G+ + +     G     +  A
Sbjct: 248 PYIEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGIGFA 307

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +               +   +   + I            K+   L   G     D +  +
Sbjct: 308 LSIERLLLALEEEGIELDIEENLDLFIVTIGDQADRYAVKLLNHLRHNGIKADKDYLQRK 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           I  Q   AD LG    +++G + + ++K+++K+  TG  E + L+ ++ Y   
Sbjct: 368 IKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK 420


>gi|26554256|ref|NP_758190.1| prolyl-tRNA synthetase [Mycoplasma penetrans HF-2]
 gi|81846191|sp|Q8EUW7|SYP_MYCPE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|26454265|dbj|BAC44594.1| prolyl aminoacyl-tRNA synthetase [Mycoplasma penetrans HF-2]
          Length = 470

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 72/449 (16%), Positives = 158/449 (35%), Gaps = 84/449 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            SK++  I++             ++  G++     G   + P G      +     +   
Sbjct: 11  FSKWYTSIIENAN----------LVDYGLVK----GTIMFKPYGFAIWKRIQEEFNKILV 56

Query: 63  RTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDI 117
                E+  P L   ++   E    + +  E+ +++     + +  ++  PT E    + 
Sbjct: 57  SLNTAEVCFPMLIPYSEFMKEKEHVEGFNPELFKVSHLGEKKLEDELVIRPTSEISFCNY 116

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
           F+ +IKSY +LP    Q    FR E   R  + R+ EFL ++ ++     + +      M
Sbjct: 117 FKKNIKSYNDLPCILNQWGSVFRVEKNTRPFL-RTSEFLWQEQHAVFADKKEAFDFSITM 175

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                                                   E + F +       +  E T
Sbjct: 176 VN--------------------------------------EYKKFVNDYLSIAVLMGEKT 197

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           + +                 A +    E L    P+ +      ++     Y GT ++  
Sbjct: 198 ENERFA-------------GADNTFTIEALM---PDGQV-----LQSATSHYLGTNFAKS 236

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               ++  +     +   S G+ + R++ A+I S  D  G++ P  +AP + +++     
Sbjct: 237 YDLKYQTKNNNYDLMFQTSAGL-STRIIGAIIMSHSDNNGLVLPFKIAPIQFAIVTSNEV 295

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           ++   +  + IY  L   G       + + +G Q    ++ G P Q+I+G K + ++ + 
Sbjct: 296 NKDSDEL-KAIYKNL--FGYKYQTYFVEKSLGLQLQENEIKGIPFQLILGKKEIENNTIT 352

Query: 418 IKHRLTGIREDMSLEEVI-NYASHRFSNN 445
           I  R T  ++++S +E   N+  +     
Sbjct: 353 IYRRDTREKQNISFKEFNQNFIENLIKEY 381


>gi|331703464|ref|YP_004400151.1| glycyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328802019|emb|CBW54173.1| Glycyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 456

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/432 (10%), Positives = 118/432 (27%), Gaps = 35/432 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  + +  +  +   +   + +      + ++ +W  SG  D +   ++   
Sbjct: 32  WDYGPLGCEVKNKLKKVWWDFFVKKNPLNVGLDSSIILNSKVWKASGHIDGFNDPLIDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF-- 155
           +   +        E   +        +          I  K   +         +  F  
Sbjct: 92  NCKSRWRADKLIEEFDSSINTGIMTSAQLEDYIKQNNILCKKCQKKDFTQIRKFALMFKT 151

Query: 156 -----------------LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
                              +  +      + S        +  +    R  +        
Sbjct: 152 NQGVLEDDSSIVYLRPETAQGIFINFKNVQRSMRKKLPFGIGQIGKSFRNEITPGNFIFR 211

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYA 257
           +          F   +D  +   +       F         D     +   ++   A YA
Sbjct: 212 TREFEQMELEFFFDPSDQKDWFKYWLDQIELFLTK--KICLDKSNYKIRENLKDELAHYA 269

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             +            E   +S R      +       S       K    +     +   
Sbjct: 270 LKTSDIEFNFPFGWGELWGISHRSDFDLKVHQ---NLSKEDLTVLKEETNQKVLANVIEP 326

Query: 318 GIGAMRVVAAVI------ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
            +G  R++ A+       E   +                 + I    +       +++  
Sbjct: 327 SVGVERLMLAIFWQAYTEEQLEENNSRTVLKLPYNLAPYQVAITPLSKQLNQNANQLFLD 386

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L     D  +D+ G  IG ++   D +G P  +    + + D KV I++R T  +E + +
Sbjct: 387 LL-NDFDAVYDETG-NIGKRYRRQDAIGTPFVITYDFQTLEDQKVTIRYRDTMKQERILI 444

Query: 432 EEVINYASHRFS 443
            ++ ++ + +F+
Sbjct: 445 SQLKDFLNSQFN 456


>gi|320104779|ref|YP_004180370.1| glycyl-tRNA synthetase [Isosphaera pallida ATCC 43644]
 gi|319752061|gb|ADV63821.1| glycyl-tRNA synthetase [Isosphaera pallida ATCC 43644]
          Length = 513

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 66/489 (13%), Positives = 132/489 (26%), Gaps = 79/489 (16%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNV-NAIIREEQNRTG-AIEMSVPTLQSADL 79
           R G I   S       G + + PLG +   N+  A  R+        + +    + +  +
Sbjct: 12  RRGFIFPSSEIYGGLNGFWDYGPLGVELKRNIKEAWWRDNVTARDDMVGLDCSIIMNPKV 71

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH-----------IKSYRNL 128
           W  SG    +   M+       +                 +             ++   L
Sbjct: 72  WEASGHVGGFSDPMVDCKATQGRYRADQMYVFTYADPRDPNRTVLLAGLGSNPEEAAEGL 131

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREF----------LMKDAYSFDLTPEGSKHSYNKMF 178
                ++      E+     V    +              D       P      +    
Sbjct: 132 DRKAAKMLKIKPAEVPAPSSVTPYLDIPDDQRDRVVGPQTDEPGTLTPPRAFNLMFKTYV 191

Query: 179 --------VSYLRIFHRLGLKSIPMRAESG----------PIGGDLSHE-----FIVLAD 215
                   ++YLR     G+ +                   IG    +E     F   + 
Sbjct: 192 GALESASNIAYLRPETAQGIFANFKNVCDTTRLKIPFGIAQIGKSFRNEINPRNFTFRSR 251

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD-------------DIISLNSIVEQWTAPYAATSDV 262
             E          D          D             D + L        A Y+  +  
Sbjct: 252 EFEQMEIEFFCHPDEAATWYRYWRDARFAWYVRHGLRSDRLRLRDHDPAELAFYSTATAD 311

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                   + E + ++ RG           K+S    + F     +     +     GA 
Sbjct: 312 IEYAFPFGVSELEGIAHRGDYDLTQHQ---KFSGKDLSYFDDETKQRFVPHVIEPSAGAD 368

Query: 323 RVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           R   A +  ++    +         +   +AP K +++ +   D    +   KIY  L  
Sbjct: 369 RATLAFLCEAYHEDEVGGEARTVLKFHPRLAPIKAAVLPLVKKD-GMPEMAAKIYRELKT 427

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +VF+D+ G  IG ++   D +G P  + +  + + D  V I+ R    +  +    +
Sbjct: 428 H-YNVFYDEKGA-IGRRYRRQDEVGTPFCLTIDGQSLQDGTVTIRDRDDCRQWRVPSANI 485

Query: 435 INYASHRFS 443
           +   +   +
Sbjct: 486 VGVLASLMA 494


>gi|297590826|ref|ZP_06949464.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|297575712|gb|EFH94428.1| histidine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
          Length = 420

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 60/413 (14%), Positives = 116/413 (28%), Gaps = 19/413 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   K    +   + E        E+  P  +S DL+        D   KEM    D+ 
Sbjct: 12  LPEDSKKWRYIENQLDELMTFYNYKEIKTPIFESTDLFARGVGDSTDVVQKEMYTFKDKG 71

Query: 101 DKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           D+++   P     +        ++   N P   Y     FR E + +    +  +F ++ 
Sbjct: 72  DRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEA 131

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                  P         +   Y     +     I    +         +E +V       
Sbjct: 132 --IGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMAS--RKEYNEALVKHFEPVI 187

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIV-----------EQWTAPYAATSDVHNEKLF 268
             FCS                 +      +           E+  A Y       ++   
Sbjct: 188 HEFCSDCQSRLHTNPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKAYLDDLGI 247

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAA 327
             + +   V          F           A T     G+ + +     G     +  A
Sbjct: 248 PYIEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGIGFA 307

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +               +   +   + I            K+   L   G     D +  +
Sbjct: 308 LSIERLLLALEEEGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRK 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           I  Q   AD LG    +++G + + ++K+++K+  TG  E + L+ ++ Y   
Sbjct: 368 IKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK 420


>gi|21220965|ref|NP_626744.1| glycyl-tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|256787874|ref|ZP_05526305.1| glycyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|289771758|ref|ZP_06531136.1| glycyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|11387143|sp|Q9L2H9|SYG_STRCO RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|6752347|emb|CAB69725.1| glycyl-tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|289701957|gb|EFD69386.1| glycyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 460

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 56/441 (12%), Positives = 124/441 (28%), Gaps = 54/441 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    + + ++WV SG   ++   +    
Sbjct: 33  WDYGPLGVELKENLKRQWWRYMVTSREDVVGLDSSVILAPEVWVASGHVATFTDPLTECT 92

Query: 98  DRND----------KAMIYGPTHEEV----MTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
             +                G   E            +         F+          + 
Sbjct: 93  SCHKRFRADHLEEAYEEKKGHAPENGLADLNCPNCGNKGTFTEPKQFSGLLSTHLGPTQD 152

Query: 144 RPRFGVMR-------SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
                 +R          F      S    P G                           
Sbjct: 153 SGSVAYLRPETAQGIFTNFAQVQTTSRRKPPFGIAQMGKSFRNEITPGN----FIFRTRE 208

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
            E   +      EF V     E       +             +++       E+ +   
Sbjct: 209 FEQMEM------EFFVKPGEDEKWQEYWMEQRWNWYTGLGLREENMRWYEHPAEKLSHYS 262

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             T+D+     F      E + V+ R            K S    + +     +     +
Sbjct: 263 KRTADIEYRFSFGGSEWGELEGVANRTDYDLSSH---AKASGQDLSYYDQEAQERWTPYV 319

Query: 315 GSYGIGAMRVVAAVIESSH-------------DGKGIIWPDSVAPFKISLINIKAHDQVC 361
                G  R + A +  ++                 +     ++P K++++ + + +   
Sbjct: 320 IEPAAGVGRAMLAFLLDAYIEDEAPNAKGKLEKRTVLRLDPRLSPVKVAVLPL-SRNPEL 378

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               + +   L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R
Sbjct: 379 SPKAKGLAQALRQNW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRER 436

Query: 422 LTGIREDMSLEEVINYASHRF 442
            T  +E +SL+++  Y + R 
Sbjct: 437 DTMKQERVSLDQIEGYLASRL 457


>gi|227879060|ref|ZP_03996950.1| histidyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256843054|ref|ZP_05548542.1| histidyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256850294|ref|ZP_05555723.1| histidyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|262046027|ref|ZP_06018991.1| histidyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
 gi|293381308|ref|ZP_06627311.1| histidyl-tRNA synthetase [Lactobacillus crispatus 214-1]
 gi|227861355|gb|EEJ68984.1| histidyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256614474|gb|EEU19675.1| histidyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256712931|gb|EEU27923.1| histidyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|260573986|gb|EEX30542.1| histidyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
 gi|290922124|gb|EFD99123.1| histidyl-tRNA synthetase [Lactobacillus crispatus 214-1]
          Length = 428

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 69/424 (16%), Positives = 132/424 (31%), Gaps = 20/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    +   V    R   NR    E+  P+ ++ +++  S     +   K+M  
Sbjct: 8   GTVDILPDQSGSWQKVEETARNFFNRANYREIRTPSFENYEIFARSSGDSSEIVEKQMYD 67

Query: 96  LADRNDKAMIYGPTHE--EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P      V   +           PF  + ++  FR E        R R
Sbjct: 68  FDDKGGRHIALRPEGTASVVRAYVEDKMYAPEVVKPFNVFYMESTFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF  +   S      M           +Y    + LG + +        +  
Sbjct: 125 EFHQIGVESFGSSNPLSDVQTIMMGHDLLGELGVKNYQLHINTLGNEQVRQDYHDALVNY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVH 263
               +  +  D+           +D     +         +   ++    A + A   + 
Sbjct: 185 FTPLKDELSEDSQRRLRDNPLRILDSKDERDKKFLPKAPKIREFLDDDSKANFEAILKML 244

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           ++   D + ++  V       G IF F     SL  SAT     G+  ++     G    
Sbjct: 245 DQLGIDYVIDDDLVRGLDYYTGIIFEFMVEDKSLWESATTILGGGRYDHLVEEFNGPATP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E            ++   +     I            +I   L   G +  +D
Sbjct: 305 AVGFGIGEERLMLVLKKQNPALFEKRGIDFFITNIGDGTAQKAIEIARSLRNQGFEADFD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV--INYASH 440
              +++ +QF  AD  G    + +G K +++  + IK    G   D+SLE++  +     
Sbjct: 365 VNQKKLKNQFKKADREGAKYVITLGEKELANGVLNIKRLADGKTIDLSLEDLNNMTKIMD 424

Query: 441 RFSN 444
              +
Sbjct: 425 ELKD 428


>gi|296119853|ref|ZP_06838407.1| glycine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967007|gb|EFG80278.1| glycine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 459

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 56/436 (12%), Positives = 127/436 (29%), Gaps = 42/436 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +R   + +    +Q    W+ SG  + +     E L
Sbjct: 32  WDYGPLGVELKENIKRQWWRHMVQSRDDVVGIDTSIIQPTQTWISSGHVEVFTDPLVESL 91

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R     +     E+                     +       E +   G++++  
Sbjct: 92  HTHKRYRADHLLEAYEEKHGHPPANGLADINDPETGQPGKWS-----EPKAFSGLLKTFL 146

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG-- 204
             + D          +       F + +              G            I    
Sbjct: 147 GPVDDEEGLHYLRPETAQGIFVNFKNVMTSARMKPPFGIANIGKSFRNEITPGNFIFRTR 206

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V     E       D           + D++       E+ +     T D
Sbjct: 207 EFEQMEMEFFVKPGEDEQWHQYWIDNRLQWYVDLGVNPDNLRLYEHPQEKLSHYSKRTVD 266

Query: 262 VHNEKLF--DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           V     F      E + V+ R      +    +++S    + F     +           
Sbjct: 267 VEYAFGFAGSKWGELEGVANRTDYDLRVH---SEHSGEDLSYFDQTTDERWTPYTIEPAA 323

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFK------ISLINIK------AHDQVCRDACEK 367
           G  R + A +  ++  + +         +        L  +K      +  +      ++
Sbjct: 324 GLGRSMMAFLVDAYTEEEVPNSKGGTDTRVVLKLDRRLSPVKVAVLPLSKKEELSTPAKE 383

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  +L  +  ++ +D  G  IG ++   D +G P  V      + D+ V ++ R +  +E
Sbjct: 384 VADKLRGLW-NIDFDVSGA-IGRRYRRQDEIGTPFCVTYDFDSLEDNAVTVRERDSMEQE 441

Query: 428 DMSLEEVINYASHRFS 443
            + ++E+  Y + R +
Sbjct: 442 RVKIDELETYLAARLA 457


>gi|167045640|gb|ABZ10289.1| putative tRNA synthetase class II core domain (G, H, P, S and T)
           [uncultured marine microorganism HF4000_APKG10K24]
          Length = 439

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 61/441 (13%), Positives = 127/441 (28%), Gaps = 39/441 (8%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNV-NAIIRE-EQNRTGAIEMSVPTLQSADL 79
           R G + Q S    G+   + + PLG +   NV  A  R     R   + +    L    +
Sbjct: 10  RRGFVFQSSEIYGGLASTWDYGPLGVELKRNVKEAWWRSVILERDDMVGLDAAILMDPKV 69

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           WV SG  +++   +++    N +      T E           +      F         
Sbjct: 70  WVASGHVENFSDPLVQCRSCNMRFRTDDLTSEA----CPSCGGELADPRQFNLMFKTFMG 125

Query: 140 RDELRPRFGVMR--SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
             E       MR  + + +  +  +   +                R     G  +   R 
Sbjct: 126 PVEDTASEIWMRPETAQGIFVNFPNVVNSTRKKLPFGIGQIGKAFRNEITPGNFTFRTR- 184

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                   +  EF V   T E  +            +     +++        +  A YA
Sbjct: 185 ----EFEQMEIEFFVKPGTDEEWLQTWVQERFDWYVAHGIRRENLRLRKHESNEL-AHYA 239

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                   +      E + +++R           +   +              Y+     
Sbjct: 240 KDCYDIEYRFPWGWAELEGIASRTDFDLRQHQEASGQDMTYFDDSVEEGQDQRYLPYVIE 299

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH---------------DQVCR 362
             G +    AV+    D        +        + +  H               ++   
Sbjct: 300 PSGGVDR--AVLAFWLDSYDEEPDPASKSSDAVRVVLHLHRELAPVTVAALPLSRNEKLT 357

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++YA+L K   +  +DD  + IG ++   D +G P  V +    + D +V I+ R 
Sbjct: 358 PTAREVYAKLRKH-FNTQYDD-AQSIGRRYRRQDEIGTPYCVTIDFDTLEDHQVTIRDRD 415

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +  + + ++++    +  
Sbjct: 416 TMSQSRIPITDLVDVLKDKLE 436


>gi|312437966|gb|ADQ77037.1| glycyl-tRNA synthetase beta subunit [Staphylococcus aureus subsp.
           aureus TCH60]
          Length = 463

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 61/443 (13%), Positives = 139/443 (31%), Gaps = 55/443 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN-----RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +NV     ++         G   +    L +  +W  SG  +++   M+
Sbjct: 32  WDYGPLGVELKNNVKKAWWQKFITQSPFNVG---IDAAILMNPKVWEASGHLNNFNDPMI 88

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D +          E+ M D+          L F   +  +     + P        E
Sbjct: 89  DNKD-SKIRYRADKLIEDYMQDVKGDENFIADGLSFEQMKKIIDDEGIVCPVSKTANWTE 147

Query: 155 ---FLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFH-----------------RL 188
              F +       +T + +   +        +FV+Y  +                   R 
Sbjct: 148 IRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRN 207

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +        +          F    +  E Q +      D+          + + L   
Sbjct: 208 EITPGNFIFRTREFEQMELEFFCKPGEEIEWQNYWKTFASDWLT--SLNMSSENMRLRDH 265

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   + Y+  +     K      E   +++R            ++S            +
Sbjct: 266 DEDELSHYSNATTDIEYKFPFGWGELWGIASRTDFDLRKH---GEHSGEDFRYHDPETNE 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHD----------GKGIIWPDSVAPFKISLINIKAHD 358
            +        +GA RV  A +  ++D             + +  ++AP+K +++ +    
Sbjct: 323 KYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKK- 381

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   KI+ +LS     + +D+  + IG ++   D +G P  V      + D++V +
Sbjct: 382 --LSGEAIKIFEQLSSK-FSIDFDES-QSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTV 437

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R +  +  M + E+  + + +
Sbjct: 438 RDRDSMEQVRMPISELEAFLTEK 460


>gi|323704183|ref|ZP_08115762.1| glycyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536249|gb|EGB26021.1| glycyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 462

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 62/456 (13%), Positives = 142/456 (31%), Gaps = 54/456 (11%)

Query: 30  GMI---HQHSKGI---YSWLPLGQKALDNVNA-IIREEQNRTGA-IEMSVPTLQSADLWV 81
           G I    +   G+   + + PLG +  +NV     R+    +   + +    L + + WV
Sbjct: 18  GFIFPGSEIYGGLANTWDYGPLGVEFKNNVKRAWWRKFIQESQYNVGIDSAILMNPETWV 77

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            SG    +   ++   +   +        + +      +++  + N     +        
Sbjct: 78  ASGHVGGFSDPLMDCKECKSRFRADKLVEDYLKEHGEETNVDGWTNERLKQFIDDNNVPC 137

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH------ 186
            +         R+F +       +T +     Y +          F + LR         
Sbjct: 138 PVCGAHNFTDIRKFNLMFKTFQGVTEDSKSEIYLRPETAQGIFVNFKNVLRTSRKKIPFG 197

Query: 187 --------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                   R  +        +          F    +  E   +  +  M++ +      
Sbjct: 198 IGQIGKSFRNEITPGNFTFRTREFEQMELEFFCKPGEDLEWFNYWKEFCMNWLLN-LGLR 256

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
            +++   +   E+ +    AT+D+         P        GI     F          
Sbjct: 257 KENLRFRDHSKEELSHYSNATTDI-----EYRFPFGWGELW-GIADRTDFDLRRHMEHSG 310

Query: 298 MSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW---------PDSVAPF 347
              T+      + +        +GA RV  A +  +++ + +             +++P 
Sbjct: 311 ADLTYFDPVTNEKYTPYCIEPSVGADRVALAFLIDAYNEEVVEENDTRVVLKLHPALSPI 370

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           K +++ +        +   K+Y  L K    V +D+ G  IG ++   D +G P  +   
Sbjct: 371 KAAVLPLSKK---LGENAYKLYDELRK-DFVVDYDETG-SIGKRYRRQDEIGTPYCITYD 425

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              ++D  V I+ R T  +  + + EV +Y   +  
Sbjct: 426 FDSLNDESVTIRDRDTMQQIRIKINEVKSYLEAKLK 461


>gi|296448072|ref|ZP_06889975.1| prolyl-tRNA synthetase [Methylosinus trichosporium OB3b]
 gi|296254429|gb|EFH01553.1| prolyl-tRNA synthetase [Methylosinus trichosporium OB3b]
          Length = 514

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 77/453 (16%), Positives = 145/453 (32%), Gaps = 104/453 (22%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR 85
           +R  MI +         P G    + + A + +    TG      P       +  E+  
Sbjct: 32  VRGCMIVK---------PWGYGVWELIQAALDKRIKETGHENCYFPLFIPMSFIAQEASH 82

Query: 86  YDSYGKEMLRLADRN----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            + + KEM  +                    ++ +I  PT E ++ D FR  + S+R+LP
Sbjct: 83  VEGFAKEMAVVTHHRLKSVDGKLVVDPDSKLEEPLIVRPTSETIIGDAFRRWVSSHRDLP 142

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
               Q     R E+R R   +R+ EFL ++                             G
Sbjct: 143 VLINQWANVVRWEMRTRL-FLRTSEFLWQE-----------------------------G 172

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             +    A++      +     V  +  E  +       + P                  
Sbjct: 173 HTAHADEADAREETRKMLE---VYREIVEDVLAVPVIAGEKPEN---------------- 213

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           E++              +     E      + ++ G   Y GT ++   +  F+GA G+ 
Sbjct: 214 ERFPG-----------AVNTYSIEAMMQDGKALQAGTSHYLGTNFAHAQNIRFQGASGEL 262

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACE 366
            +    S+G+ + R+V  VI +  D  G+  P ++AP +I ++ +   K  D      CE
Sbjct: 263 EFCHTTSWGV-STRLVGGVIMTHGDDDGLRLPPAIAPKQIVVVPMLRDKPEDSEVLAYCE 321

Query: 367 KIYARL-----SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            + A L      K       D    +  ++       G P+ + +G +  S+  V +  R
Sbjct: 322 ALKADLDDLVALKAPLRAHVDKKPVRAANKRWDWARRGAPIILEIGPRDASNGMVTMIRR 381

Query: 422 L---TGIRED---MSLEEVINY---ASHRFSNN 445
                G +     M   + +            N
Sbjct: 382 DRLRDGDKIVSVGMPRADFLATAPALLAEIQKN 414


>gi|282163066|ref|YP_003355451.1| threonyl-tRNA synthetase [Methanocella paludicola SANAE]
 gi|282155380|dbj|BAI60468.1| threonyl-tRNA synthetase [Methanocella paludicola SANAE]
          Length = 636

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 67/436 (15%), Positives = 126/436 (28%), Gaps = 48/436 (11%)

Query: 19  EIASH-KLMLRTGMIHQH---SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
            +  H +LM R  +         G   + P G+   + +   +  E  + GA+E+  P +
Sbjct: 209 RVPPHVELMRRLELADYEPGSDPGNMRFYPKGRMVKNLLENYVLMEAAKKGAMEVETPIM 268

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
              +        D +      +       +            +      SY+NLP    +
Sbjct: 269 YDMEHPTLKKYLDRFPARQYTVIADKKN-LFLRFAACFGQFLMSHDMTISYKNLPLKMIE 327

Query: 135 -IQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
             +  FR E R    G+ R R F M D ++      G+   +   +   +     +GL  
Sbjct: 328 LTRYSFRKEQRGELVGLRRLRAFTMPDMHTLCADMAGATSEFRDQYEMCINTLDTIGLTL 387

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                                    E  +  ++DF D                  ++E W
Sbjct: 388 KDY----------------------EVAIRFTRDFYDQN-KGFIKGLVKRAGKPVVIEMW 424

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
              +            DSL +   +S   I+V        + +     T+   DG   Y 
Sbjct: 425 DQRFFYFVLKFEFNFIDSLDKASALSTVQIDV--------ENAERYDITYVDQDGSKKYP 476

Query: 313 QMGSYGIG--AMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIY 369
            +          R + A +E             +  +       I +      D C ++ 
Sbjct: 477 TILHCSPSGAIERCIYAQLEKQFMESEKGQVPMLPVWLSPTQVRIISLSDRHADYCRRLA 536

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI---- 425
             L      V  DD  E +  +   A     P  V +G   +   K  +  R        
Sbjct: 537 GELRPN--RVDIDDREETVSKKVRDAGKEWIPYVVTIGDAEIGKDKFPVVVRSESQPNKP 594

Query: 426 -REDMSLEEVINYASH 440
            + +M++EE+    + 
Sbjct: 595 LKVEMTVEELKARLAK 610


>gi|91775972|ref|YP_545728.1| histidyl-tRNA synthetase [Methylobacillus flagellatus KT]
 gi|123380447|sp|Q1H0V0|SYH_METFK RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|91709959|gb|ABE49887.1| histidyl-tRNA synthetase [Methylobacillus flagellatus KT]
          Length = 419

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 60/417 (14%), Positives = 119/417 (28%), Gaps = 25/417 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G Y  LP        +    R+  ++ G   + +P ++  +L++       D   KEM  
Sbjct: 10  GFYDILPADTALWQRIEDSARQVLSQYGYRNIRLPIVEPTELFIRGVGEHTDIVEKEMYS 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+ +   +                     N P   + +   FR E   +    +  + 
Sbjct: 70  WEDKLNGDRLTLRPEGTAGCVRAVVEHSLTYNGPQRLWYMGPMFRHENVQKGRQRQFHQI 129

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             +         +  + S                   + +G  S   +     I     H
Sbjct: 130 GAEAFGYTGPDVDAEQISMLARLWRELGVANEVELQLNTIGDASERAQYRQVLIRYFEQH 189

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI-ISLNSIVEQWTAPYAATSDVHNE-- 265
           E ++  D            +D   P+  T  +     L+S+ E+  A +   +   ++  
Sbjct: 190 ESLLDDDAKRRLYANPLRILDSKNPAMQTMIEAAPKLLDSLGEESRAHFDGVTRQLDQLG 249

Query: 266 ---KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               L   L        R +        G++ ++     +          +  + G G  
Sbjct: 250 IKWTLNTRLVRGLDYYNRTVFEWVTNKLGSQGTIAGGGRYDSLVQSLGGKETPACGFGIG 309

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++              +  F    + +         A   I   L   G  V   
Sbjct: 310 LERVFLLMRECG---------IEAFHSPDVYLVNVGDAANKAALPIAEALRDSGLSVSLH 360

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYA 438
             G    SQ   AD  G    +I+G   ++ ++V +K  R  G +  MSL + I   
Sbjct: 361 AGGGSFKSQMKKADQSGAQYALILGDDEIAANEVCLKPLRENGEQRRMSLSQAIEAL 417


>gi|281413080|ref|YP_003347159.1| histidyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
 gi|281374183|gb|ADA67745.1| histidyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
          Length = 420

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 123/409 (30%), Gaps = 21/409 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R      G  E+  P  +  +L+V S     D   KEM    D+  +++   
Sbjct: 20  WRYVEETFRNVCESAGIEEIRTPIFEQTELFVRSVGEESDIVQKEMYTFQDKAGRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  +    R     +Y +   FR E        R R+F            
Sbjct: 80  PEGTAPVVRAFLENSLVDRGFQQRYYYVGPMFRYEKPQSG---RLRQFHQVGFEIIGPES 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCSK 225
             +      +  ++L    RLGL    +   S   P+      E +           C  
Sbjct: 137 PKADFEMIILVDTFL---RRLGLTKYKIHLNSIGCPVCRKNYREALKEYYGQVLDNLCDD 193

Query: 226 DFMDFPIPSENTDFDDI---------ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
               +           +          S++ + +   A Y    +  N    + + ++  
Sbjct: 194 CKRRYETNILRLLDCKVDHEYALNAPKSVDYLCDSCRAHYKKLKEYLNTFEIEYVEDHTL 253

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V  RG++      F  ++    +       G+   +     G     +  A         
Sbjct: 254 V--RGLDYYTRTVFEVRHEGLGAQNAIAGGGRYDGLFAELGGSSVPALGFAGGIERIILA 311

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                  +    + L+ I    +       ++   L K G  V  D M  ++  Q   A 
Sbjct: 312 LKAEGIEIPMKNVHLVYIATLGEKAFMDGVQLAGELRKKGLSVDVDIMDRKLSGQLKHAS 371

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +G    VI+G + +    V ++   TG + ++  +   +Y + R S +
Sbjct: 372 RMGSRYAVIIGDEELEKGIVILRDLETGDQVEIDRDFAADYIAERVSKD 420


>gi|319400957|gb|EFV89176.1| histidyl-tRNA synthetase [Staphylococcus epidermidis FRI909]
          Length = 424

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 63/407 (15%), Positives = 127/407 (31%), Gaps = 19/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   +          E+  P  +S +L+        D   KEM    D+ D+++   
Sbjct: 19  WRYIENRLHTLMELYNYKEIRTPIFESTELFARGVGDSTDVVQKEMYTFKDKGDRSLTLR 78

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +        ++   N P   Y     FR E + +    +  +F ++        
Sbjct: 79  PEGTAAVVRSYIEHKMQGDPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEA--IGAEN 136

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P         +   Y     +     I    +S        +E +V         FCS  
Sbjct: 137 PSIDAEILAMVMHIYESFGLKHLKLVINSIGDSES--RKEYNEALVKHFEPVIDTFCSDC 194

Query: 227 ----------FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN-K 275
                      +D  I  +     +   +   +   +  Y     +H + L  S  E+  
Sbjct: 195 QSRLHTNPMRILDCKIDRDKEAVKNAPRITDYLNNDSKSYYKQVKLHLDNLNISYVEDPN 254

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            V          F           A T     G+ + +     G     +  A+      
Sbjct: 255 LVRGLDYYTHTAFELMIDNPEYDGAITTLCGGGRYNGLLQLLDGPDETGIGFALSIERLL 314

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                   S+   +   + +    +       K+   L + G  V  D +  +I  Q   
Sbjct: 315 MALDEEGISLDVSEDFDLFVVTMGEDADRYAVKLINDLRRNGIKVDKDYLNRKIKGQMKQ 374

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           AD L     V++G + + ++++ +K+ ++G  E++ L+E+INY  +R
Sbjct: 375 ADRLNAKYTVVIGDQELENNEIGVKNMISGETENVQLDELINYFKNR 421


>gi|289803037|ref|ZP_06533666.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 105

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 58/104 (55%), Gaps = 1/104 (0%)

Query: 341 PDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           PD++APF+++++ +  H     ++  EK+Y+ L   G +V  DD  E+ G  FA  +L+G
Sbjct: 1   PDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQGIEVLMDDRKERPGVMFADMELIG 60

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P  +++G + + +  +E K+R +G +  +   ++++Y      
Sbjct: 61  IPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIVDYLVKAIK 104


>gi|87199967|ref|YP_497224.1| prolyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444]
 gi|114152224|sp|Q2G6Y3|SYP_NOVAD RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|87135648|gb|ABD26390.1| prolyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444]
          Length = 515

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 67/411 (16%), Positives = 125/411 (30%), Gaps = 87/411 (21%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + +  ++  E    G      P       +  E+   + + KEM  +
Sbjct: 39  GCMVIKPWGYGIWERIQKLMDAEIKEAGVENCYFPLFIPLSYFTKEAEHVEGFAKEMAVV 98

Query: 97  ADRN-----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                                ++ ++  PT E V+       I+S+R+LP    Q     
Sbjct: 99  THHRLISDGKGGLTPDPEAKLEEPLVVRPTSETVIGAAMSRWIQSWRDLPLLTNQWANVV 158

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E+R R  + R+ EFL ++                             G  +    A++
Sbjct: 159 RWEMRTRMFL-RTSEFLWQE-----------------------------GHTAHVDEADA 188

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                     +   A+                +P       +       VE +       
Sbjct: 189 MKETLRALEMYRAFAE------------GPLAMPVIAGPKPENERFPGAVETF------- 229

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                        E      + ++ G   Y GT ++      ++  +G+       S+G+
Sbjct: 230 -----------SIEAMMQDGKALQAGTSHYLGTTFAKAAGIQYQNKEGQQALAHTTSWGV 278

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKV- 375
            + R++  VI +  D  G+  P  VAP +I ++ +      D      CE+I A L K+ 
Sbjct: 279 -STRLIGGVIMTHGDDDGLRVPPQVAPQQIVILPMLRDNEGDDALLAYCEEIRASLVKLS 337

Query: 376 ----GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                  V  D    +   +       G PL + +G +      V +  R 
Sbjct: 338 VFGERIRVLLDKRPGKATQKRWAWVKKGMPLILEIGGRDAEGGLVSVLRRD 388


>gi|222445472|ref|ZP_03607987.1| hypothetical protein METSMIALI_01111 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435037|gb|EEE42202.1| hypothetical protein METSMIALI_01111 [Methanobrevibacter smithii
           DSM 2375]
          Length = 431

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 71/427 (16%), Positives = 145/427 (33%), Gaps = 48/427 (11%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMI 105
            +      +I+R         E+  P  +   L+  +SG  +    ++    D++D+ + 
Sbjct: 17  MRERKKAESILRNVFENYAYQEIKTPLFEELKLFTTKSG--EEIVDQLYNFKDKSDRELT 74

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFD 164
             P     +  ++ + ++   + P   Y     FR E   +    R R+F          
Sbjct: 75  LRPEITAPVARLYLNELQKTASKPIKLYYYGSCFRYERPQKG---RFRQFWQFGCELIGA 131

Query: 165 LTPEGSKHSYNKMFVSYLR------IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
            +P+G          S  +        +   L  I    +   I      E +V+ D G+
Sbjct: 132 KSPQGEAEVIAMCSESIEKLGIPGADVNINHLGIIRGLFKHFNIDTATQREVMVVIDKGD 191

Query: 219 TQVFCSKDFMDFPI-PSENTDFDDIISLNS--------IVEQWTAPYAATSDVHNE--KL 267
             +       + PI  +E  +      ++          +E+  APY  + D  NE  +L
Sbjct: 192 KDLLKESLTGENPIIDNEELNHVLFKLIDMVGDKSIIKDIEELVAPYPESHDALNELEEL 251

Query: 268 FDSLPENKRVSA-------RGIEV--GHIFY-----FGTKYSLPMSATF-KGADGKDHYV 312
            D+L   K  +        RG++   G +F       G +  +    T+          V
Sbjct: 252 IDTLASFKMENYTLNLGVARGLDYYTGIVFEVYIPSLGAQKQVCGGGTYSLIKIFGGEEV 311

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               +  G  R++ A+       +     +   P  I +  I       R    +I   L
Sbjct: 312 VSTGFAFGFDRLMNAI------EELATPEELPCPIDIYVAPI---SDDVRLKAYEITQTL 362

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                    D  G++       A+ +      I+G+K + ++++ IK+  +G +E + L+
Sbjct: 363 RSAEIACDVDLNGKKFKKIMNHANKIKVKQVAIIGAKDLENNQITIKNMESGNQELVDLD 422

Query: 433 EVINYAS 439
            V+ Y  
Sbjct: 423 NVVEYIK 429


>gi|153938880|ref|YP_001392872.1| glycyl-tRNA synthetase [Clostridium botulinum F str. Langeland]
 gi|152934776|gb|ABS40274.1| glycine--tRNA ligase [Clostridium botulinum F str. Langeland]
 gi|295320849|gb|ADG01227.1| glycine--tRNA ligase [Clostridium botulinum F str. 230613]
          Length = 463

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 146/441 (33%), Gaps = 49/441 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +  +WV SG    +   ++   
Sbjct: 34  WDYGPLGVELKNNVKKAWWKKFVQESPYNVGLDAAILMNNQVWVASGHVGGFSDPLMDCK 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKS--YRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           +            EE MT+       +  + N     Y                   R+F
Sbjct: 94  EC-KARFRADKLVEEHMTEQGVEKASADGWSNEKLKQYIDDNGIECPKCKAKNFTDIRKF 152

Query: 156 LMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
            +       +T +     Y        +FV++  +      K     A+ G    +    
Sbjct: 153 NLMFKTFQGVTEDAKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRNEITP 212

Query: 209 ---------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                          EF     T        KD+    + +   + ++I   +   E+ +
Sbjct: 213 GNFTFRTREFEQMELEFFCKPGTDLEWFNYWKDYCWNFLINLGINKENIRFRDHSQEELS 272

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGADGKDHY- 311
               ATSD+          E   V+ R       F              +     K+ Y 
Sbjct: 273 HYSNATSDI-EFLFPFGWGELWGVADR-----TDFDLKKHMEHSGEDLNYLDPTTKERYV 326

Query: 312 VQMGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCR 362
                  +GA RVV A +  ++D            +    ++APFK +++ +        
Sbjct: 327 PYCIEPSLGADRVVLAFLVDAYDEEELEGGDVRNVLHLHPALAPFKAAVLPLSKK---LS 383

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +++Y+ LSK   ++ +D+ G  IG ++   D +G P  + V    + D+ V I+ R 
Sbjct: 384 DKSQEVYSMLSKK-FNIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTIRDRD 441

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +  +++ E+  +   +  
Sbjct: 442 TMNQIRVNINELEKFIEDKLE 462


>gi|302560754|ref|ZP_07313096.1| glycyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
 gi|302478372|gb|EFL41465.1| glycyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
          Length = 460

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 55/439 (12%), Positives = 125/439 (28%), Gaps = 50/439 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    + + ++WV SG   ++   +    
Sbjct: 33  WDYGPLGVELKENLKRQWWRYMVTSREDVVGLDSSVILAPEVWVASGHVATFTDPLTECT 92

Query: 98  DRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             + +     +      ++           S                 E +   G++ + 
Sbjct: 93  SCHKRFRADHLEEAYEEKKGRAPENGLADLS------CPNCGNKGTFTEPKQFSGLLSTH 146

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------LGLKSIPMRAESGPIGG- 204
               +D+ S       +       F        +        +G            I   
Sbjct: 147 LGPTQDSGSVAYLRPETAQGIFTNFAQVQTASRKKPPFGIAQMGKSFRNEITPGNFIFRT 206

Query: 205 ----DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                +  EF V     E       +             +++       E+ +     T+
Sbjct: 207 REFEQMEMEFFVKPGEDEQWQEYWMEQRWNWYTGLGLREENMRWYEHPKEKLSHYSKRTA 266

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+     F      +     G+     +  G  +K S    A F    G+     +    
Sbjct: 267 DIEYRFQFGGSEWGELE---GVANRTDYDLGAHSKASGQDLAYFDQEAGERWTPYVIEPA 323

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK---------------AHDQVCRD 363
            G  R + A +    D        +          ++               + +     
Sbjct: 324 AGVGRAMLAFLL---DAYVEDEAPNAKGKMEKRTVLRLDHRLAPVKAAVLPLSRNAELSP 380

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             + +   L     ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R +
Sbjct: 381 KAKGLAQALRTHW-NIEFDDAGA-IGRRYRRQDEIGTPYCVTVDFDTLDDNAVTVRERDS 438

Query: 424 GIREDMSLEEVINYASHRF 442
             +E +SL+++  Y + R 
Sbjct: 439 MKQERVSLDQIEGYLASRL 457


>gi|320010915|gb|ADW05765.1| glycyl-tRNA synthetase [Streptomyces flavogriseus ATCC 33331]
          Length = 460

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 58/432 (13%), Positives = 131/432 (30%), Gaps = 36/432 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+           R   + +    + + ++WV SG   ++   +    
Sbjct: 33  WDYGPLGVELKENLKRQWWRYMVTAREDVVGIDSSVILAPEVWVASGHVATFSDPLTECT 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +        E       +  +    +L             E +   G++ +     
Sbjct: 93  SCHKR-YRADHLEEAYEEKHGKPPVNGLADL-NCPNCGNKGTFTEPKAFSGLLSTHLGPT 150

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------LGLKSIPMRAESGPIGG----- 204
           +D  S       +       F    +   +        +G            I       
Sbjct: 151 QDTGSVAYLRPETAQGIFTNFGQVQQTSRKKPPFGIAQMGKSFRNEITPGNFIFRTREFE 210

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +  EF V     E       +             +++       E+ +     T+D+  
Sbjct: 211 QMEMEFFVKPGEDEQWQEYWMEQRWNWYTGLGLREENMRWFEHPQEKLSHYSKRTADIEY 270

Query: 265 EKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F      E + V+ R           ++ S      +    G+ +   +     G  
Sbjct: 271 RFRFGGSEWGELEGVANRTDYDLKAH---SEASGTDLFYYDQEKGERYTPYVIEPAAGVG 327

Query: 323 RVVAAVIESSHDGKGI------IWPDSVAPFKISLINIK------AHDQVCRDACEKIYA 370
           R + A +  ++           +   +V      L  +K      + +       + + A
Sbjct: 328 RSMLAFLLDAYSEDEAPNAKGVMEKRAVMRLDPRLAPVKVAVLPLSRNPQLSPKAKGLAA 387

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R T  +E +S
Sbjct: 388 DLRQNW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRERDTMKQERVS 445

Query: 431 LEEVINYASHRF 442
           L+++ +Y   R 
Sbjct: 446 LDQIQSYLGSRL 457


>gi|288560504|ref|YP_003423990.1| histidyl-tRNA synthetase HisS [Methanobrevibacter ruminantium M1]
 gi|288543214|gb|ADC47098.1| histidyl-tRNA synthetase HisS [Methanobrevibacter ruminantium M1]
          Length = 433

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 70/433 (16%), Positives = 138/433 (31%), Gaps = 40/433 (9%)

Query: 44  PLGQK--ALDNV------NAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEML 94
           P G +    + +         +R      G  E+  P  +   L+  +SG  +    ++ 
Sbjct: 6   PRGTRDFLFEEMRERKMAEDTLRNVFENYGFGEVQTPLFEDLKLFTTKSG--EEIVDQLY 63

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+ D+ +   P     +  ++ + ++   + P   Y     FR E   +    R R+
Sbjct: 64  NFKDKGDRDLALRPEITAPIARLYLNELQ-KTSKPIKIYYYGSCFRYERPQKG---RFRQ 119

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA-------ESGPIGGDLS 207
           F               +     M  + +        +                 I     
Sbjct: 120 FWQFGCELIGAKTPEGEAEVIAMCNNAIEELGITTAEFNVNHLGIIRGLFAHFDIDTATQ 179

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII----------SLNSIVEQWTAPYA 257
            E +V+ D G+  +       + PI  +  + ++++          S+   +E+  APY 
Sbjct: 180 REIMVVIDKGDKDLLKDSLVGENPIIKDKPELNEVLFKLMDMVGDSSIIKDIEELVAPYE 239

Query: 258 ATSDVHNE-----KLFDSLPENKRVSARGIEVGHIFYFG---TKYSLPMSATFKGADGKD 309
            T +   E     K  +S          G+  G  +Y G     Y   + A  +   G  
Sbjct: 240 ETQEALEEFKELVKTLESFQVFNYKLNLGVARGLDYYTGIVFEVYVEGLGAQKQVCGGGT 299

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           + +     G   +    A+               V    I    + A     R     I 
Sbjct: 300 YNLVKLFGGEDVVSTGFALGFDRLMNAIEELNGKVELEPIVNTYVAAISDSTRHNAFSIA 359

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L K       D   ++     A A+ +     V+VG + + + KV IK  LTG +E +
Sbjct: 360 QDLRKANIPTEVDLSRKKFKKILAYANKIDVKYTVLVGERDLEEGKVTIKDMLTGEQELV 419

Query: 430 SLEEVINYASHRF 442
           +++EV++Y   + 
Sbjct: 420 AIDEVVDYIKGKL 432


>gi|240172984|ref|ZP_04751642.1| glycyl-tRNA synthetase [Mycobacterium kansasii ATCC 12478]
          Length = 460

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 54/435 (12%), Positives = 129/435 (29%), Gaps = 40/435 (9%)

Query: 40  YSWLPLGQKALDNVNA-IIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           + + PLG +  +N+     R     R   + +    +   ++WV SG  + +   ++   
Sbjct: 32  WDYGPLGVELKENIKRQWWRSVITSRDDVVGIDSSIILPREVWVASGHVEVFHDPLVESL 91

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN----------LPFTFYQIQLKFRDELRP 145
           +  +  +A      +E        + +   R+           P  F  +   +   +  
Sbjct: 92  ITHKRYRADHLIEAYEAKHGHPPPNGLADIRDPDTGEPGQWTEPREFNMMLKTYLGPIET 151

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+   R    +  +        +        +  +    R  +        +      
Sbjct: 152 EEGLHYLRPETAQGIFINFANVVTTSRKKPPFGIGQIGKSFRNEITPGNFIFRTREFEQM 211

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               F+  +   E   +     + + +     D  ++       E+ +     T D+  +
Sbjct: 212 EMEFFVEPSTAKEWHQYWIDTRLQWYVE-LGIDPQNLRLWEHPKEKLSHYSDRTVDIEYK 270

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             F   P  +     G+     F   T  K+S      +   +   +   +     G  R
Sbjct: 271 FGFLGNPWGELE---GVANRTDFDLSTHSKHSGTDLNFYDQVNDTRYTPYVIEPAAGLTR 327

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIK---------------AHDQVCRDACEKI 368
              A +    D        +          ++               +           +
Sbjct: 328 SFMAFLI---DAYSEDEAPNAKGVMEKRTVLRLDARLAPVKAAVLPLSRHADLSPKARDL 384

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A L     ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R    +E 
Sbjct: 385 AAELRTCW-NIEFDDAGA-IGRRYRRQDEIGTPYCVTVDFDSLEDNAVTVRERDAMTQER 442

Query: 429 MSLEEVINYASHRFS 443
           +++++V +Y + R  
Sbjct: 443 IAIDKVADYLAVRLK 457


>gi|297194489|ref|ZP_06911887.1| glycyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197718701|gb|EDY62609.1| glycyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 460

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 60/432 (13%), Positives = 131/432 (30%), Gaps = 36/432 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    + + ++W  SG   ++   +    
Sbjct: 33  WDYGPLGVELKENIKRQWWRYMVTSREDVVGIDSSVILATEVWEASGHVATFTDPLTECT 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +        EE   +      ++                 E +   G++ +     
Sbjct: 93  SCHKR--YRADHLEEAYEEKHGRLPENGLADLNCPNCGNKGTFTEPKQFSGLLSTHLGPT 150

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------LGLKSIPMRAESGPIGG----- 204
           +D+ S       +       F   L+   +        +G            I       
Sbjct: 151 QDSGSVAYLRPETAQGIFTNFGQVLQTARKKPPFGIAQMGKSFRNEITPGNFIFRTREFE 210

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +  EF V     E       +             +++       E+ +     T+D+  
Sbjct: 211 QMEMEFFVKPGEDEKWHEYWMEQRWNWYRDLGLREENMRWFEHPQEKLSHYSKRTADIEY 270

Query: 265 EKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F      E + V+ R           +K S      F     +     +     G  
Sbjct: 271 RFQFGGSEWGELEGVANRTDYDLKAH---SKASGTDLLYFDQDAQERWTPYVIEPAAGVG 327

Query: 323 RVVAAVIESSHDGKGI------IWPDSVAPFKISLINIK------AHDQVCRDACEKIYA 370
           R + A +  +++          +   +V      L  +K      + +       + + A
Sbjct: 328 RAMLAFLLDAYNEDEAPNAKGVMEKRAVLRLDPRLAPVKVAVLPLSRNAQLSPKAKGLAA 387

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R T  +E +S
Sbjct: 388 DLRKNW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRERDTMKQERVS 445

Query: 431 LEEVINYASHRF 442
           L+++  Y   R 
Sbjct: 446 LDQIQGYLGSRL 457


>gi|291529102|emb|CBK94688.1| glycyl-tRNA synthetase, dimeric type [Eubacterium rectale M104/1]
          Length = 465

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 65/444 (14%), Positives = 137/444 (30%), Gaps = 51/444 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     +      L +   WV SG    +   ++   
Sbjct: 32  WDYGNLGVELKNNVKRAWWKKFIQENPYNVGVDCAILMNPQTWVASGHLGGFSDPLMDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           + +++        E+   D       S   + N     +  +         +      R+
Sbjct: 92  ECHER-FRADKIIEDFAQDNGIELETSVDGWTNEQMVDFIKEHNVPCPSCGKHNFTDIRQ 150

Query: 155 FLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRA 197
           F +       +T +     Y                             ++G        
Sbjct: 151 FNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQVGKSFRNEIT 210

Query: 198 ESGPIGGDLSHEFIV---LADTG---ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                      E +      + G   E   +      D+ I       +D + L      
Sbjct: 211 PGNFTFRTREFEQMELEFFCEPGTDLEWFKYWRGFCRDWLI--SLGIKEDEMRLRDHDPA 268

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y+  +            E   ++ R            + S      F       + 
Sbjct: 269 ELAFYSKGTTDIEFLFPFGWGELWGIADRTDYDLGRHQ---EVSGQDLTYFDDQKNDKYL 325

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKG------------IIWPDSVAPFKISLINIKAHDQ 359
             +    +GA RVV A + +++D +               +  ++AP KI ++ +     
Sbjct: 326 PYVIEPSLGADRVVLAFLCAAYDEEDIGTPEKPDVRTVFHFHPALAPVKIGVLPLSKK-- 383

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              ++ EK++A+LSK   +  +DD G  IG ++   D +G P  V        D  V ++
Sbjct: 384 -LNESAEKVFAQLSKT-YNCEYDDRG-TIGKRYRRQDEIGTPFCVTYDFDSEEDHCVTVR 440

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R T  +E ++++E+  Y + +F 
Sbjct: 441 DRDTMEQERIAIDELDAYFAKKFE 464


>gi|42560999|ref|NP_975450.1| glycyl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|59798544|sp|Q6MTE4|SYG_MYCMS RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|42492496|emb|CAE77092.1| glycine-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301320658|gb|ADK69301.1| glycine--tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 456

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/432 (10%), Positives = 120/432 (27%), Gaps = 35/432 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  + +  +  +   +   + +      + ++ +W  SG  D +   ++   
Sbjct: 32  WDYGPLGCEVKNKLKKVWWDFFVKKNPLNVGLDSSIILNSKVWKASGHIDGFNDPLIDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF-- 155
           +   +        E   +        +          I  K   +         +  F  
Sbjct: 92  NCKSRWRADKLIEEFDSSINTGIMTSAQLEDYINQNNILCKKCQKKDFTQIRQFALMFKT 151

Query: 156 -----------------LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
                              +  +      + S        +  +    R  +        
Sbjct: 152 NQGVLEDDSSIVYLRPETAQGIFINFKNVQRSMRKKLPFGIGQIGKSFRNEITPGNFIFR 211

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYA 257
           +          F   +D  +   +       F         D     +   ++   + YA
Sbjct: 212 TREFEQMELEFFFDPSDQKDWFKYWLDQIELFLTK--KICLDKSNYKIRENLKDELSHYA 269

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             +            E   +S R      +       S       K  + +     +   
Sbjct: 270 LKTSDIEFNFPFGWGELWGISHRSDFDLKVHQ---NLSKEDLTVLKEENNQKVLANVIEP 326

Query: 318 GIGAMRVVAAVI------ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
            +G  R++ A+       E   +                 + I    +       +++  
Sbjct: 327 SVGVERLMLAIFWQAYTEEQLEENNSRTVLKLPYNLAPYQVAITPLSKQLNQNAHQLFLE 386

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K   D  +D+ G  IG ++   D +G P  +    + + D KV I++R T  +E + +
Sbjct: 387 LLK-DFDAVYDETG-NIGKRYRRQDAIGTPFVITYDFQTLEDQKVTIRYRDTMKQERILI 444

Query: 432 EEVINYASHRFS 443
            ++ ++ + +F+
Sbjct: 445 SQLKDFLNSQFN 456


>gi|117928006|ref|YP_872557.1| glycyl-tRNA synthetase [Acidothermus cellulolyticus 11B]
 gi|117648469|gb|ABK52571.1| glycyl-tRNA synthetase [Acidothermus cellulolyticus 11B]
          Length = 465

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/453 (14%), Positives = 135/453 (29%), Gaps = 44/453 (9%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADL 79
           R G +   S    G+   + + PLG +  +NV     +     R   + +    + +  +
Sbjct: 20  RRGFVFPSSEIYGGLRAAWDYGPLGVELKNNVKRQWWKAMVHGREDIVGLDSCVILNPIV 79

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG   ++   +    +       +     E   +       ++     T      K 
Sbjct: 80  WKTSGHLTAFVDPL---TECLVCHHRFRADELEAAYEARHRRPPAHGLADVTCPDCGAKG 136

Query: 140 RD-ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------LGL 190
              E R   G++++    ++D  +       +       F++  +   R         G 
Sbjct: 137 SFTEPRMFNGLLKTFLGPVEDESAVAYLRPETAQGIFVNFLNVQQTARRKPPFGIAQQGK 196

Query: 191 KSIPMRAESGPIGG-----DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                      I        +  EF V   T E       D       +     +++   
Sbjct: 197 SFRNEITPGNFIFRTREFEQMEMEFFVKPGTDEEWHQYWIDTRLAWYVNLGIKPENLRLY 256

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFK 303
               E+ +     T D+     F  L   +     GI     F        S    + F 
Sbjct: 257 EHPKEKLSHYSKRTVDIEYRFGFPGLEWAELE---GIANRTDFDLSAHSAASGVDLSYFD 313

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI------SLINIK-- 355
              G+     +     G  R V   +  ++              +        L  +K  
Sbjct: 314 QETGQRWIPYVIEPAAGVDRCVLTFLLDAYAEDEAPTAQGGVEKRTVLRLDHRLAPVKVA 373

Query: 356 ----AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
               + +         I A L K   +V +DD    IG ++   D +G P  V V    +
Sbjct: 374 VLPLSRNPDLSPKARDIAAELRKYW-NVEFDDAAA-IGRRYRRQDEIGTPYCVTVDFDTL 431

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +D  V ++ R +  +E + ++ ++ Y + R ++
Sbjct: 432 NDQAVTVRDRDSMKQERVGIDALVGYLTERLTD 464


>gi|329724725|gb|EGG61231.1| histidine--tRNA ligase [Staphylococcus epidermidis VCU144]
          Length = 424

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/407 (14%), Positives = 118/407 (28%), Gaps = 19/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   +          E+  P  +S +L+        D   KEM    D+ D+++   
Sbjct: 19  WRYIENRLHTLMELYNYKEIRTPIFESTELFARGVGDSTDVVQKEMYTFKDKGDRSLTLR 78

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +        ++   N P   Y     FR E + +    +  +F ++        
Sbjct: 79  PEGTAAVVRSYIEHKMQGEPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEA--IGAEN 136

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P         +   Y     +     I    +S        +E +V         FCS  
Sbjct: 137 PSIDAEILAMVMHIYESFGLKHLKLVINSIGDSES--RKEYNEALVKHFEPVIDTFCSDC 194

Query: 227 FMDFPIPSENTDFDDIISLNSIVE-----------QWTAPYAATSDVHNEKLFDSLPENK 275
                          I      V+              + Y       +      + +  
Sbjct: 195 QSRLHTNPMRILDCKIDRDKEAVKNAPRITDYLNNDSKSYYERVKLHLDNLNISYVEDPN 254

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            V          F           A T     G+ + +     G     +  A+      
Sbjct: 255 LVRGLDYYTHTAFELMIDNPEYDGAITTLCGGGRYNGLLQLLDGPDETGIGFALSIERLL 314

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                   S+   +   + +    +       K+   L + G  V  D +  +I  Q   
Sbjct: 315 MALDEEGISLDVSEDFDLFVVTMGEDADRYAVKLINDLRRNGIKVDKDYLNRKIKGQMKQ 374

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           AD L     V++G + + ++++ +K+ ++G  E++ L+E++NY   R
Sbjct: 375 ADRLNAKYTVVIGDQELENNEIGVKNMISGESENVQLDELVNYFKSR 421


>gi|238924230|ref|YP_002937746.1| glycyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
 gi|259511935|sp|C4ZAV7|SYG_EUBR3 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|238875905|gb|ACR75612.1| glycyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
          Length = 465

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/444 (14%), Positives = 138/444 (31%), Gaps = 51/444 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     +      L +   WV SG    +   ++   
Sbjct: 32  WDYGNLGVELKNNVKRAWWKKFIQENPYNVGVDCAILMNPQTWVASGHLGGFSDPLMDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           + +++        E+   D       S   + N     +  +         +      R+
Sbjct: 92  ECHER-FRADKIIEDFAQDNGIELETSVDGWTNEQMVDFIKEHNVPCPSCGKHNFTDIRQ 150

Query: 155 FLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRA 197
           F +       +T +     Y                             ++G        
Sbjct: 151 FNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQVGKSFRNEIT 210

Query: 198 ESGPIGGDLSHEFIV---LADTG---ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                      E +      + G   E   +      D+ I       +D + L      
Sbjct: 211 PGNFTFRTREFEQMELEFFCEPGTDLEWFKYWRGFCRDWLI--SLGIKEDEMRLRDHDPA 268

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             A Y+  +            E   ++ R            + S      F     + + 
Sbjct: 269 ELAFYSKGTTDIEFLFPFGWGELWGIADRTDYDLGRHQ---EVSGQDLTYFDDQKNEKYL 325

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKG------------IIWPDSVAPFKISLINIKAHDQ 359
             +    +GA RVV A + +++D +               +  ++AP KI ++ +     
Sbjct: 326 PYVIEPSLGADRVVLAFLCAAYDEEDIGTPEKPDVRTVFHFHPALAPVKIGVLPLSKK-- 383

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              ++ EK++A+LSK   +  +DD G  IG ++   D +G P  V        D  V ++
Sbjct: 384 -LNESAEKVFAQLSKT-YNCEYDDRG-TIGKRYRRQDEIGTPFCVTYDFDSEEDHCVTVR 440

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R T  +E ++++E+  Y + +F 
Sbjct: 441 DRDTMEQERIAIDELDAYFAKKFE 464


>gi|27468230|ref|NP_764867.1| histidyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57867126|ref|YP_188769.1| histidyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251811035|ref|ZP_04825508.1| histidyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875945|ref|ZP_06284812.1| histidine--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|293366413|ref|ZP_06613091.1| histidine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|32130102|sp|Q8CS98|SYH_STAES RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|71153564|sp|Q5HNS1|SYH_STAEQ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|27315776|gb|AAO04911.1|AE016748_145 histidyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57637784|gb|AAW54572.1| histidyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251805453|gb|EES58110.1| histidyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294970|gb|EFA87497.1| histidine--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|291319447|gb|EFE59815.1| histidine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329735204|gb|EGG71496.1| histidine--tRNA ligase [Staphylococcus epidermidis VCU045]
 gi|329737401|gb|EGG73655.1| histidine--tRNA ligase [Staphylococcus epidermidis VCU028]
          Length = 424

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/407 (15%), Positives = 126/407 (30%), Gaps = 19/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   +          E+  P  +S +L+        D   KEM    D+ D+++   
Sbjct: 19  WRYIENRLHTLMELYNYKEIRTPIFESTELFARGVGDSTDVVQKEMYTFKDKGDRSLTLR 78

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +        ++   N P   Y     FR E + +    +  +F ++        
Sbjct: 79  PEGTAAVVRSYIEHKMQGEPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEA--IGAEN 136

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P         +   Y     +     I    +S        +E +V         FCS  
Sbjct: 137 PSIDAEILAMVMHIYESFGLKHLKLVINSIGDSES--RKEYNEALVKHFEPVIDTFCSDC 194

Query: 227 ----------FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN-K 275
                      +D  I  +     +   +   +   +  Y     +H + L  S  E+  
Sbjct: 195 QSRLHTNPMRILDCKIDRDKEAVKNAPRITDYLNNDSKSYYEQVKLHLDNLNISYVEDPN 254

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            V          F           A T     G+ + +     G     +  A+      
Sbjct: 255 LVRGLDYYTHTAFELMIDNPEYDGAITTLCGGGRYNGLLQLLDGPDETGIGFALSIERLL 314

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                   S+   +   + +    +       K+   L + G  V  D +  +I  Q   
Sbjct: 315 MALDEEGISLDVSEDFDLFVVTMGEDADRYAVKLINDLRRNGIKVDKDYLNRKIKGQMKQ 374

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           AD L     V++G + + ++++ +K+ ++G  E++ L+E++NY   R
Sbjct: 375 ADRLNAKYTVVIGDQELENNEIGVKNMISGESENVQLDELVNYFKSR 421


>gi|331002910|ref|ZP_08326423.1| glycyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330413203|gb|EGG92577.1| glycyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 462

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/442 (13%), Positives = 140/442 (31%), Gaps = 50/442 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV A   ++  +     +      L +   W+ SG   S+   ++   
Sbjct: 32  WDYGNLGVELKNNVKAAWWQKFIKESPYNVGVDCAILMNPQTWIASGHLGSFSDPLMDCK 91

Query: 98  DRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           + +++     +I    HE  +         S   +     +  ++       +      R
Sbjct: 92  ECHERFRADKIIEDYMHENGIVTEGSVDAWSNEEMKKYIEEHNIECP--TCGKHNFTDIR 149

Query: 154 EFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGL 190
           +F +       +T +     Y +          F +  R                 R  +
Sbjct: 150 QFNLMFKTFQGVTEDAKNVVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQVGKSFRNEI 209

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                   +          F       E   +     +++         +D + L    +
Sbjct: 210 TPGNFTFRTREFEQMELEFFCKPGTDLEWFDYWRSYCINWLT--SLGIREDQMRLRDHDK 267

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           +  + Y+  +            E   ++ R     +      + S      F     + +
Sbjct: 268 EELSFYSNATTDIEFLFPFGWGELWGIADRTDYDLNRHQ---EVSGQDLTYFDDETSERY 324

Query: 311 YVQMGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVC 361
              +    +GA RV  A + +++D            + +  ++AP KI ++ +       
Sbjct: 325 IPYVIEPSLGADRVTLAFLCAAYDEEILEGGESRTVLRFHPALAPVKIGILPLSKK---L 381

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   KI   LSK   +V +DD G  IG ++   D +G P  +       +D+ V ++ R
Sbjct: 382 NEGALKISEELSKY-YNVEFDDRG-NIGKRYRRQDEIGTPFCITYDFDSENDNAVTVRDR 439

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            +  +  + + E+ NY   +F 
Sbjct: 440 DSMEQVRIPIAELKNYFEDKFR 461


>gi|9955267|pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
           Synthetase
 gi|9955268|pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
           Synthetase
          Length = 420

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/413 (15%), Positives = 121/413 (29%), Gaps = 19/413 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   K    +   + E        E+  P  +S DL+        D   KEM    D+ 
Sbjct: 12  LPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKG 71

Query: 101 DKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           D+++   P     +        ++   N P   Y     FR E + +    +  +F ++ 
Sbjct: 72  DRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEA 131

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD---T 216
                  P         +   Y     +     I    +         +E +V       
Sbjct: 132 --IGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMAS--RKEYNEALVKHFEPVI 187

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--- 273
            E    C       P+   +   D          + T      S  + E++   L +   
Sbjct: 188 HEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKAYLDDLGI 247

Query: 274 ---NKRVSARGIEV--GHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAA 327
                    RG++      F           A T     G+ + +     G     +  A
Sbjct: 248 PYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGIGFA 307

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +               +   +   + I            K+   L   G     D +  +
Sbjct: 308 LSIERLLLALEEEGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRK 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           I  Q   AD LG    +++G + + ++K+++K+  TG  E + L+ ++ Y   
Sbjct: 368 IKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK 420


>gi|78044066|ref|YP_361018.1| histidyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
 gi|123743144|sp|Q3AA16|SYH_CARHZ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|77996181|gb|ABB15080.1| histidyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 423

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/401 (13%), Positives = 113/401 (28%), Gaps = 18/401 (4%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIY 106
             + +    RE   R G  E+  P  +  +L+        D   KEM    D+  +++  
Sbjct: 19  LWEEIERKFREVCRRFGYQEIRTPIFEHTELFERGVGETTDIVEKEMYTFLDKAGRSITL 78

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +   +    K     P  ++ I   FR +        R R+F           
Sbjct: 79  RPEGTAAVIRAYVEAKKYADPGPAKYFYIGPMFRYDKPQAG---RLRQFHQLGVEILGSD 135

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCS 224
                       +  L  +  +GL  + +R  S   P       E ++       +  C 
Sbjct: 136 EPMVDAEV---ILMALEFYREIGLNDVELRLNSVGCPECRKSLREKLINYFEERKEELCD 192

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
                              S   I +    P +       E   +          + +  
Sbjct: 193 LCKARLNRNPLRILDCKNESCQKIAQNAPTPLSELCPDCREHFTEVRKYLDLAQVKYVID 252

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA--------VIESSHDGK 336
             +      Y+           G    +  G    G +R +           +       
Sbjct: 253 PFLVRGLDYYTKTAFEFVVPEIGAQSSIGGGGRYNGLIREIGGPDQPGIGFALGEERTIL 312

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            +          +  + +    +  R+    +   L ++   V  D  G+ + +Q   A+
Sbjct: 313 ALKRKSEEISVPVPDLFVCLLGEEAREYGFPLINELRRLNLWVETDYQGKSLKAQLKAAN 372

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            L     +I+G + +   +  ++   TG + ++S +E+I  
Sbjct: 373 RLKAKAALIIGEEELKSGRFILRDLDTGEQVELSRDELIEK 413


>gi|270610574|ref|ZP_06221671.1| threonine--tRNA ligase [Haemophilus influenzae HK1212]
 gi|270318077|gb|EFA29334.1| threonine--tRNA ligase [Haemophilus influenzae HK1212]
          Length = 151

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 59/148 (39%), Gaps = 7/148 (4%)

Query: 299 SATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            AT+   D        +    +G++     +I    +     +P  +AP +  ++NI   
Sbjct: 9   DATYVAEDNSRKTPVMIHRAILGSIERFIGIIT---EEYAGFFPAWLAPTQAVVMNITDS 65

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                D  +K+  +LS VG  V  D   E++G +     L   P  ++ G K +++ KV 
Sbjct: 66  ---QADYVQKVAKQLSDVGLRVKTDLRNEKVGFKIREHTLRRVPYMLVCGDKEIAEGKVA 122

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R        ++EE      ++  + 
Sbjct: 123 VRTRKGADLGTFTVEEFAEILKNQVRSR 150


>gi|223044387|ref|ZP_03614421.1| glycyl-tRNA synthetase [Staphylococcus capitis SK14]
 gi|222442256|gb|EEE48367.1| glycyl-tRNA synthetase [Staphylococcus capitis SK14]
          Length = 463

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/447 (14%), Positives = 148/447 (33%), Gaps = 59/447 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN-----RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +N+     ++         G   +    L +   W  SG   ++   M+
Sbjct: 32  WDYGPLGVELKNNIKKAWWQKFITQSPYNVG---IDAAILMNPKTWEASGHLGNFNDPMI 88

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS-- 152
              D +          E+ M             L F   +  +     + P  G      
Sbjct: 89  DNKD-SKIRYRADKLIEDYMQKEKGDENFIADGLSFDEMKQIIDDEGIVCPVSGTANWTD 147

Query: 153 -REFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFH-----------RLGLKSIP 194
            R+F +       +T + +   +        +FV+Y  +             ++G     
Sbjct: 148 IRQFNLMFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRN 207

Query: 195 MRAESGPIGGDLSHEFIV---LADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIV 249
                  I      E +        GE   +    K F    +   N + +++   +   
Sbjct: 208 EITPGNFIFRTREFEQMELEFFCKPGEEIEWQNFWKTFASQWLKDLNINEENMRLRDHDA 267

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKG-AD 306
           ++ +    AT+D+   K      E   +++R       F    K+S        +     
Sbjct: 268 DELSHYSNATTDI-EYKFPFGWGELWGIASR-----TDFDL-QKHSEHSGEDFKYHDPET 320

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHD----------GKGIIWPDSVAPFKISLINIKA 356
            + +        +GA RV  A +  +++             + +  ++AP+K +++ +  
Sbjct: 321 NEKYVPYCIEPSLGADRVTLAFLCDAYEEEGVEGSKDARTVMHFHPALAPYKAAVLPLSK 380

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     KI+ +LS+    + +D+  + IG ++   D +G P  +      + D++V
Sbjct: 381 K---LSSEAIKIFEQLSQS-FSIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQV 435

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R +  +  M + E+  + + +  
Sbjct: 436 TVRDRDSMEQVRMPISELETFLAEKVK 462


>gi|289642681|ref|ZP_06474821.1| glycyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
 gi|289507511|gb|EFD28470.1| glycyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
          Length = 461

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/432 (13%), Positives = 129/432 (29%), Gaps = 37/432 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     +     R   + +    + + ++W  SG    +   +    
Sbjct: 35  WDYGPLGVELKNNVKRAWWKAMVQGREDVVGLDSCVILAREVWETSGHVQVFVDPL---T 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +       +   H E   +  R    +                 E R   G++++    +
Sbjct: 92  ECLSCHKRFRADHLEEAFEARRGRPPTALTEVACPNCGSRGTFTEPRMFNGLLKTYLGPV 151

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLSHE 209
           +DA         +       + +      R         G            I      E
Sbjct: 152 EDASGLAYLRPETAQGIFINYANVQATARRKPPFGIGQIGKSFRNEITPGNFIFRTREFE 211

Query: 210 FIVL---ADTGETQVFCSKDFMD--FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            + +      GE + +      +            +++       E+ +     T D+  
Sbjct: 212 QMEMEFFVPPGEDETWHQYWIDERTKWYHDLGVRPENLRHFEHPKEKLSHYSKRTVDIEY 271

Query: 265 EKLFDSL--PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F  L   E + ++ R      +     K S      F+ A G  +   +     G  
Sbjct: 272 RFDFVGLEWGELEGIANRTDYDLSVH---AKASGADLTYFEQATGTRYTPYVIEPAAGVD 328

Query: 323 RVVAAVIESSHDGKGIIWPD------SVAPFKISLINIKA------HDQVCRDACEKIYA 370
           R     +  ++                V      L  +KA       +         + A
Sbjct: 329 RATLVFLLDAYAEDTAPNTKGGVDRRVVLRLDRRLAPVKAAVLPLSRNADLSPVARDLAA 388

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L +   +V +DD G  IG ++   D +G P  + V    + D  V I+ R T  +E ++
Sbjct: 389 ALRRHW-NVDFDDAGA-IGRRYRRQDEIGTPFCLTVDFDSLQDQAVTIRERDTMAQERVA 446

Query: 431 LEEVINYASHRF 442
           +++ ++Y + + 
Sbjct: 447 MDQAVSYLNAKL 458


>gi|289550664|ref|YP_003471568.1| Glycyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|289180196|gb|ADC87441.1| Glycyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
          Length = 463

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/447 (13%), Positives = 141/447 (31%), Gaps = 59/447 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN-----RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +NV     ++         G   +    L +   W  SG   ++   M+
Sbjct: 32  WDYGPLGVELKNNVKKAWWQKFITQSPYNVG---IDAAILMNPKTWEASGHLGNFNDPMI 88

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS-- 152
              D +          E+ M             L F   +  +     + P  G      
Sbjct: 89  DNKD-SKIRYRADKLIEDYMQQQKGDENFIADGLSFDEMKRIIDEEGIVCPVSGTANWTD 147

Query: 153 -REFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFH-----------RLGLKSIP 194
            R+F +       +T + +   +        +FV+Y  +             ++G     
Sbjct: 148 IRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRN 207

Query: 195 MRAESGPIGGDLSHEFIV---LADTGETQVFCSKDFMDFPIPSEN--TDFDDIISLNSIV 249
                  I      E +        GE ++     +  F           ++ + L    
Sbjct: 208 EITPGNFIFRTREFEQMELEFFCKPGE-EIEWQNYWKTFASQWLKDLNISEENMRLRDHD 266

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKG-AD 306
           E   + Y+  +     K      E   +++R       F    ++S        +     
Sbjct: 267 EDELSHYSNATTDIEYKFPFGWGELWGIASR-----TDFDL-KQHSEHSGEDFKYHDPET 320

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDG----------KGIIWPDSVAPFKISLINIKA 356
            + +        +GA RV  A +  ++D             + +  ++AP+K +++ +  
Sbjct: 321 NEKYIPYCIEPSLGADRVTLAFLCDAYDQEGVEGSKDARTVLHFHPALAPYKAAVLPLSK 380

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     KI+  LS     + +D+  + IG ++   D +G P  +      + D++V
Sbjct: 381 K---LSGEAIKIFEDLSSK-FAIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQV 435

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R +  +  M + E+  + + +  
Sbjct: 436 TVRDRDSMDQVRMPIAELEAFLTEKVK 462


>gi|330686113|gb|EGG97734.1| glycine--tRNA ligase [Staphylococcus epidermidis VCU121]
          Length = 463

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/445 (13%), Positives = 146/445 (32%), Gaps = 55/445 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++        + +    L +   W  SG   ++   M+   
Sbjct: 32  WDYGPLGVELKNNVKKAWWQKFITQSPYNVGLDAAILMNPKTWEASGHLGNFNDPMIDNK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS---RE 154
           D +          E+ M             L F   +  +     + P  G       R+
Sbjct: 92  D-SKIRYRADKLIEDYMQHEKGDENFIADGLSFDEMKKIIDDEGIVCPVSGTANWTDIRQ 150

Query: 155 FLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFH-----------------RLGLK 191
           F +       +T + +   +        +FV+Y  +                   R  + 
Sbjct: 151 FNLMFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQVGKSFRNEIT 210

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  +          F    +  E Q +  K F    +   N   +++   +   ++
Sbjct: 211 PGNFIFRTREFEQMELEFFCKPGEEIEWQNY-WKTFASQWLKDLNISEENMRLRDHDADE 269

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKG-ADGK 308
            +    AT+D+   K      E   +++R       F    K+S        +      +
Sbjct: 270 LSHYSNATTDI-EYKFPFGWGELWGIASR-----TDFDL-KKHSEHSGEDFKYHDPETNE 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSH----------DGKGIIWPDSVAPFKISLINIKAHD 358
            +        +GA RV  A +  ++          +   + +  ++AP+K +++ +    
Sbjct: 323 KYIPYCIEPSLGADRVTLAFLCDAYSQEGVEGSKDERTVLKFHPALAPYKAAILPLSKK- 381

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   KI+ +LS+    + +D+  + IG ++   D +G P  +      + D++V +
Sbjct: 382 --LSSEAIKIFEQLSQS-FSIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTV 437

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R +  +  M + E+  + + +  
Sbjct: 438 RDRDSMEQVRMPISELEAFLAEKVK 462


>gi|296108860|ref|YP_003615809.1| glycyl-tRNA synthetase [Methanocaldococcus infernus ME]
 gi|295433674|gb|ADG12845.1| glycyl-tRNA synthetase [Methanocaldococcus infernus ME]
          Length = 570

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 95/286 (33%), Gaps = 22/286 (7%)

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP-----IGGDLSHEFIVLADTGETQVF 222
                 Y            R G       A+               +  V  +  E +V 
Sbjct: 297 PNEMAHYAIDCWDAEIYTERFGWIECVGIADRTDYDLKSHMAHSGEDLSVFVEGEEREVE 356

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             +  +++ +        D   + S ++              EKL   L E   V     
Sbjct: 357 DYEIELNYKVVG-KIFKKDTKVIESYLKNLGV-------SDKEKLVKELNEKGEVEICIG 408

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH----DGKGI 338
           +    F    ++            G+     +     G  R+   ++E S+    D   +
Sbjct: 409 DK--SFKLTNEHLKIEKVKRV-IKGEKVVPHVIEPSFGIDRIFYCLLEHSYREEEDRAYL 465

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +AP K  +  +  + +   +  ++I   L +      +DD G  IG ++  AD +
Sbjct: 466 DLKPEIAPIKAYVFPLV-NREGMPELAKRIRDMLRENKIIAEYDDSGA-IGRRYMRADEI 523

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G P  + V  + + D+ V ++ R T  +E + +EE+++Y   + S+
Sbjct: 524 GVPFCITVDGQTLKDNTVTVRDRNTREQERVKIEELVDYLRSKISS 569



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 1/108 (0%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G   + PLG    +N+    RE    + G  E+  PT+   ++   SG  D++   ++ 
Sbjct: 28  AGFVDYGPLGCLLKNNIINKFRERFIVKEGFYEIESPTVTPYEVLKASGHVDNFTDPIVE 87

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
             +  +         E+V  D     +K    +   +     K   E 
Sbjct: 88  CKNCLENFRADHIIEEQVDIDTESLSLKELEEVIKKYNIRCPKCGGEF 135


>gi|239979348|ref|ZP_04701872.1| glycyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291451223|ref|ZP_06590613.1| glycyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291354172|gb|EFE81074.1| glycyl-tRNA synthetase [Streptomyces albus J1074]
          Length = 460

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/440 (14%), Positives = 127/440 (28%), Gaps = 52/440 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    + ++++WV SG   ++   +    
Sbjct: 33  WDYGPLGVELKENIKRQWWRYMVTSRDEVVGLDSSVILASEVWVASGHVATFSDPLTECT 92

Query: 98  --------DRNDKAMIYGPTH------EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
                   D  ++A              ++      +  +      F+          + 
Sbjct: 93  SCHKRFRADHLEEAYEAKHGRLPENGLADINCPHCGNKGQFTEPKEFSGLLSTHLGPTQD 152

Query: 144 RPRFGVMR-------SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
                 +R          F      S    P G                           
Sbjct: 153 SGSIAYLRPETAQGIFTNFAQVQQTSRRKPPFGIAQMGKSFRNEITPGN----FIFRTRE 208

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
            E   +      EF V     E       +             +++       E+ +   
Sbjct: 209 FEQMEM------EFFVKPGEDEQWQEYWMEQRWNWYTGLGLREENMRWFEHPKEKLSHYS 262

Query: 257 AATSDVHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             T+D+     F      E + V+ R            K S    + F    G+     +
Sbjct: 263 KRTADIEYRFQFGGSEWGELEGVANRTDYDLSAH---AKASGQDLSFFDQEAGERWTPYV 319

Query: 315 GSYGIGAMRVVAAVIESSHDGKGII------WPDSVAPFKISLINIKA------HDQVCR 362
                G  R + A +  ++               +V  F   L  +KA       +    
Sbjct: 320 IEPAAGVGRAMLAFMLDAYIEDEAPNAKGKLEKRTVMRFDPRLAPVKAAVLPLSRNPELS 379

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              + + A L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R 
Sbjct: 380 PKAKGLAAALRQHW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRERD 437

Query: 423 TGIREDMSLEEVINYASHRF 442
           T  +E +SL+++  Y + R 
Sbjct: 438 TMKQERVSLDQIEGYLAARL 457


>gi|226226315|ref|YP_002760421.1| glycyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
 gi|226089506|dbj|BAH37951.1| glycyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
          Length = 446

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/442 (14%), Positives = 121/442 (27%), Gaps = 41/442 (9%)

Query: 28  RTGMIHQH-----SKGIY-SWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADL 79
           R G I Q        G    + PLG +   N+         R+      +    L     
Sbjct: 17  RRGFIFQSSEIYGGTGSVWDYGPLGVELKKNIKDFWWNAMVRSRDDIEGLDAAILMHPRT 76

Query: 80  WVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           W  SG    +     +  +   R     +     E  +     +         F      
Sbjct: 77  WEASGHVAGFTDPLVDCKQCKARFRADKMDPKKLEANVCPNCGNKGTLTEPRLFNLMFKT 136

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
                E         S   +     +         +    M         ++G       
Sbjct: 137 HMGALEE--------SSSIVYLRPETAQGIFVNFLNVQQSMRQKVPFGIAQIGKAFRNEI 188

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS----ENTDFDDIISLNSIVEQW 252
                I      E + +    E                    +     D +  +      
Sbjct: 189 TPGNFIFRTREFEQMEMQFFVEPGTDMEWFEQWKAKRMQWHFDLGLSPDRLKFHQHDAGE 248

Query: 253 TAPYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            A YA  +         +L + +   +  RG           +YS      F   + K +
Sbjct: 249 LAHYARAAFDVTFDFGGTLGDQEIEGIHNRGDFDLSQHQ---QYSGKKLEYFDQPNNKRY 305

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGII----------WPDSVAPFKISLINIKAHDQV 360
              +    +GA RV  A + +++  + +              S+AP K ++  +   D  
Sbjct: 306 VPYVIETSVGADRVTLATLVNAYREETVEGESEGRVVLGLKHSIAPIKAAIFPLTKKD-G 364

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   +I   L      V +D+ G  IG ++   D +G P  V V  +   D  V ++ 
Sbjct: 365 QPEMANRIVDDLRSA-FAVDYDETG-SIGKRYRRQDEVGTPFCVTVDGQSTGDQTVTVRD 422

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R T  ++ + + ++  Y + + 
Sbjct: 423 RDTLAQDRVDVSQLKGYLAAKL 444


>gi|119775498|ref|YP_928238.1| histidyl-tRNA synthetase [Shewanella amazonensis SB2B]
 gi|166228611|sp|A1S862|SYH_SHEAM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|119767998|gb|ABM00569.1| histidyl-tRNA synthetase [Shewanella amazonensis SB2B]
          Length = 424

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/423 (15%), Positives = 125/423 (29%), Gaps = 26/423 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        + A++R+     G  E+  P ++S DL+  S G   D   KEM  
Sbjct: 10  GMNDILPNQSPVWQKLEAVLRDAVAAFGYSEIRTPIVESTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y     FR E   +    +  +F
Sbjct: 70  FEDRNGDSLTLRPEGTASTVRAGNEHGLLYNQEQRLWYT-GPMFRHERPQKGRYRQFHQF 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            ++         +      + M           +   + LG            I     H
Sbjct: 129 GVEVYGIASADIDAEVLMLSNMLWQKLGLTEHVVLEINTLGDSDERAAYRDALIAFLEVH 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKL 267
           +  +  D+           +D   P       D  +L   + E+  + ++   ++ +   
Sbjct: 189 KDKLDEDSQRRMYSNPLRVLDTKNPEIQAILADAPALMDYLGEESKSHFSTLRELLDAVG 248

Query: 268 FDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                  + V         +F       G + ++     + G  G+       + G    
Sbjct: 249 IQYRVNPRLVRGLDYYNRTVFEWVTDSLGAQGTVLAGGRYDGLVGQLGGKDTPAVGFAMG 308

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVF 380
                ++  + +        +        + + A    C  A   I   L     G  + 
Sbjct: 309 LERIVLLLETLEL-------AKDVPAAVDVYVTAMGDSCVPAAFAIANELRVALPGVRIM 361

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYAS 439
               G     Q   AD  G  L +I+G   +++ KV IK  R    ++ ++ E +     
Sbjct: 362 THCGGGNFKKQIKRADKSGAALALIIGDNELAEGKVAIKPLRNDNEQQLVAREALAETIK 421

Query: 440 HRF 442
              
Sbjct: 422 ALI 424


>gi|297571270|ref|YP_003697044.1| glycyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931617|gb|ADH92425.1| glycyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
          Length = 464

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/436 (13%), Positives = 131/436 (30%), Gaps = 43/436 (9%)

Query: 40  YSWLPLGQKALDNVNAIIRE-----EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +N+     +      ++  G   +    +   ++WV SG   ++   ++
Sbjct: 36  WDYGPLGVELKENIKRQWWKANVTGREDMVG---LDSSIILPREVWVASGHVSTFSDPLI 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
                + + +      E+       +  +   +              E +P  G++++  
Sbjct: 93  ECQHCHKR-LREDDLIEQYAEKKGVAESEVSMSDVACPNCGTRGQWTESKPFSGLLKTFL 151

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDL 206
             + +          +       F++ +    +         G            I    
Sbjct: 152 GPVDNEEGLHYLRPETAQGIFVNFLNVVTAARKKPPFGIGQVGKSFRNEITPGNFIFRTR 211

Query: 207 SHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             E     F V     E       D             +++       E+ +     T D
Sbjct: 212 EFEQMEIEFFVKPGEDEEWHQSWIDARLAWYEDLGVSRENLRLYEHPKEKLSHYSKRTVD 271

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTK-YSLPMSATFKGA-DGKDHYVQMGSYGI 319
           +     F      +     GI     F   +   +      +     G+ +   +     
Sbjct: 272 IEYRFGFQGSEWGELE---GIANRTDFDLSSHSEASGKKLEYFDQATGERYTPYVVEPSA 328

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R + A +  ++                       +AP K++++ + +          
Sbjct: 329 GLTRSLMAFLTEAYTEDEAPNTKGGVDKRIVLKLDPRLAPVKVAVLPL-SRSADLSPMAR 387

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++ A+L K   +V +DD G  +G ++   D +G P  V V    + D  V I+ R T  +
Sbjct: 388 ELAAKLRKHW-NVDFDDAGA-VGRRYRRQDEIGTPFCVTVDFDSLEDQAVTIRDRDTMEQ 445

Query: 427 EDMSLEEVINYASHRF 442
             + L EV  Y + + 
Sbjct: 446 VRIPLAEVEAYLAGKL 461


>gi|68071553|ref|XP_677690.1| aminoacyl-tRNA synthetase [Plasmodium berghei strain ANKA]
 gi|56497903|emb|CAH98595.1| Bi-functional aminoacyl-tRNA synthetase, putative [Plasmodium
           berghei]
          Length = 324

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 5/160 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R I+     Y GT ++      F+       +V   S+G    R +  +I    D KG+I
Sbjct: 50  RAIQAATSHYLGTNFAKMFKIEFEDEQENKQFVHQTSWGC-TTRSIGVMIMIHSDNKGLI 108

Query: 340 WPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVA 395
            P +VA +K  ++ I    + +    + C+ I   L     +  +DD      G +F   
Sbjct: 109 LPPNVAKYKAVIVPILYKNSDETAIFNYCKDIEKVLKNAQINCIFDDRDLYSPGYKFNHW 168

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +L G P+++ VG K + ++      R    + ++  E V+
Sbjct: 169 ELRGIPIRIEVGPKDIQNNSCVFVRRDNNQKFNIKKESVL 208


>gi|312977238|ref|ZP_07788986.1| histidine--tRNA ligase [Lactobacillus crispatus CTV-05]
 gi|310895669|gb|EFQ44735.1| histidine--tRNA ligase [Lactobacillus crispatus CTV-05]
          Length = 428

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 130/424 (30%), Gaps = 20/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    +   V    R   NR    E+  P+ ++ +++  S     +   K+M  
Sbjct: 8   GTVDILPDQSGSWQKVEETARNFFNRANYREIRTPSFENYEIFARSSGDSSEIVEKQMYD 67

Query: 96  LADRNDKAMIYGPTHEEV--MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P          +           PF  + ++  FR E        R R
Sbjct: 68  FDDKGGRHIALRPEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF  +   S      M           +Y    + LG + +        +  
Sbjct: 125 EFHQIGVESFGSSNPLSDVQTIMMGHDLLGELGVKNYQLHINTLGNEQVRQDYHDALVNY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVH 263
               +  +  D+           +D     +         +   ++    A + A   + 
Sbjct: 185 FTPLKDELSEDSQRRLRDNPLRILDSKDERDKKFLPKAPKIREFLDDDSKANFDAILKML 244

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +   D + ++  V       G IF F     SL  SAT     G+  ++     G    
Sbjct: 245 GQLGIDYVIDDDLVRGLDYYTGIIFEFMVEDKSLWESATTILGGGRYDHLVEEFNGPATP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E            ++   +     I            +I   L   G +  +D
Sbjct: 305 AVGFGIGEERLMLVLEKQNPALFEKRGIDFFITNIGDGTAQKAIEIARSLRNQGFEADFD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV--INYASH 440
              +++ +QF  AD  G    + +G K +++  + IK    G   D+SLE++  +     
Sbjct: 365 VNQKKLKNQFKKADREGAKYVITLGEKELANGVLNIKRLADGKTIDLSLEDLNNMTKIMD 424

Query: 441 RFSN 444
              +
Sbjct: 425 ELKD 428


>gi|85859321|ref|YP_461523.1| histidyl-tRNA synthetase [Syntrophus aciditrophicus SB]
 gi|85722412|gb|ABC77355.1| histidyl-tRNA synthetase [Syntrophus aciditrophicus SB]
          Length = 426

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 127/409 (31%), Gaps = 21/409 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE  +R G  E+ +P L+  DL+        D   KEM    DR D+ +   
Sbjct: 26  WRFVEDAAREIFSRFGFKEIRLPVLEKTDLFKRGIGESTDIVEKEMYTFLDRGDEYLTLR 85

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  H           + I   FR E   R    R R+F   D     L  
Sbjct: 86  PEATSSVIRAYLEHALYNAEPVSRLFTIGPMFRRERPQRG---RFRQFHQIDVELLGLDD 142

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
             +      M + +L       +    +    +   P    +  EF+   + G     C 
Sbjct: 143 PRADAEVILMLMHFLSTVGLKNVSLELNSLGCSSCRPAFRKVILEFLSGKEDGLCDD-CK 201

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE------NKRVS 278
           +     P+   +    +   + +   + +    +    H E +  +L E           
Sbjct: 202 RRLGSNPLRVFDCKAKECQEIIADAPRLSDFICSDCHTHFETVASTLTELDIPFKINARM 261

Query: 279 ARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            RG++      F   T++    +A   G        ++G   I  +              
Sbjct: 262 VRGLDYYTKTTFEVTTEHLGSQNAVVGGGRYDRLVEELGGPDIPGIGFAVGF----ERLI 317

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            ++  ++        + I +  +  +     +  +L   G  V  D     + SQ   A+
Sbjct: 318 TLLQAENTRFLPQPDLFIASLGESAQRLAFLLCNQLRIKGLHVEQDFSARSLKSQMKRAN 377

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            L     +I+G + + + K E +   TG ++ + L+ +           
Sbjct: 378 RLNCAYTLILGDRELEEKKAEFRDMKTGAQQTLFLDNLEEQILKLIKER 426


>gi|294055777|ref|YP_003549435.1| glycyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
 gi|293615110|gb|ADE55265.1| glycyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
          Length = 512

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/494 (14%), Positives = 142/494 (28%), Gaps = 80/494 (16%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNA-IIRE-EQNRTGAIEMSVPTLQSADL 79
           R G I   S       G + + PLG +  +N+     R+    R     +    +   D+
Sbjct: 20  RRGFIFPSSEIYGGYNGFFDYGPLGVELRNNIKQAWWRDFVHRRDDIEGLDSSIIMHPDI 79

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK---------SYRNLPF 130
           W  SG  D +   M+   +   +       +  V+ D   +            S      
Sbjct: 80  WKASGHVDGFSDPMVDCKESKLRYRADQLFNATVVLDGEVAGYVAFVEGADDTSILKRAK 139

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT---PEGSKHSYNKMFVSYLRIFHR 187
               +    + ++          EF    A     T      +  +  +     L    +
Sbjct: 140 KLRDLAGNKQAKIDEDVLRKDQVEFTEVSAEQRAKTLGPDASALDTLTEPREFKLMFETK 199

Query: 188 LGLKSIPMR-AESGPIGGDLSHE-FIVLADTGETQVFCSKDFMDFPIPSENTD----FDD 241
           +G  +     A   P         +  + DTG  ++      +     +E T     F  
Sbjct: 200 VGPLADDSATAYLRPETAQGIFANYKNIVDTGRVKIPFGIAQIGKAFRNEITPRNFIFRS 259

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSL------------------PENKRVSARGIE 283
                  +E + AP A    +H E L   +                  PE+K        
Sbjct: 260 REFEQMEIEYFIAPDADWRQLHREWLDTCIDWLVSIGLPRESVTEDIHPEDKLAFYSQAT 319

Query: 284 VGHIFYFG--------------------TKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +F F                      K+S      F  +    +   +    +G  R
Sbjct: 320 TDLMFEFPHGEQELWGIACRSDYDLNQHQKHSGKSMEIFDESSKSKYVPHVIEPSLGVDR 379

Query: 324 VVAAVIE--SSHDGKGIIWPDSVAPFKISL-----------INIKAHDQVCRDACEKIYA 370
            + AV+      D        +     +               +  +     +  + +Y 
Sbjct: 380 TLLAVLTAAYCEDEVPNDKGKAEKRTLLKFSPKIAPYKAAVFPLLKNKPELVERAQALYQ 439

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS-DSKVEIKHRLTGIREDM 429
           RL +   +VF+D  G  IG ++   D +G P  + +    +  D  V ++ R T  +  +
Sbjct: 440 RLQRRW-NVFYDASGA-IGRRYRRQDEIGTPFGITIDFDTIEKDGTVTLRDRDTCEQRRV 497

Query: 430 SLEEVINYASHRFS 443
           + +E+I +   +  
Sbjct: 498 TEDELIAFLEEQID 511


>gi|332799864|ref|YP_004461363.1| Histidyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
 gi|332697599|gb|AEE92056.1| Histidyl-tRNA synthetase [Tepidanaerobacter sp. Re1]
          Length = 438

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 131/441 (29%), Gaps = 52/441 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP  Q   + +  IIR    + G I +  P ++ +++ +  G  ++  +     
Sbjct: 12  PGFLELLPKDQILFNEIKDIIRNTYEKHGFIPIDTPLIEKSEILLAKGGGETEKQIYRFT 71

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               D A+ +  T          +   S    PF  Y I   +R E   R    R REF 
Sbjct: 72  KGDTDMALRFDLTVPLARY---VAQHFSELTFPFRRYHIGKVYRGEKSQRG---RFREFY 125

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-------- 208
             D            +    + + Y   F  LG ++  ++  +  I              
Sbjct: 126 QCDVDIIGNGKLNVIYDAEILSIIY-CTFKNLGFENFTIKINNRKILNGFFSSLGITNSV 184

Query: 209 EFIVLADTGETQVFCSKDFMDFPIP-------------------SENTDFDDIISLNSIV 249
           E +   D  E      K  +D  I                    ++      + SLN   
Sbjct: 185 EVLRAIDKLE--KIGEKGVIDELINLGLSRDAVTKILKFIQIRGNDEEKLQSLKSLNIES 242

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           + +         V +      +PE        I  G  +Y GT     +  TF     + 
Sbjct: 243 QIFQEGIKELITVTDYTKIFGVPEKNYTIDLTIARGLDYYTGT-----VYETFLDDYPEI 297

Query: 310 HYVQMGSYGIGAMRVVAAVIES-----------SHDGKGIIWPDSVAPFKISLINIKAHD 358
             V  G                            +  K     ++  P   + + I   D
Sbjct: 298 GSVCSGGRYENLAEYYTTQKLPGVGVSIGLTRLFYQLKEAGLLENDTPSTFTKVLIIPMD 357

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       KI   L +            +IG +   A+ L  P  + +G + V + K  +
Sbjct: 358 ESFNGYAIKIANTLRENNIISEVYFEDAKIGKKLNYANNLNIPYTIFIGDEEVKNQKASL 417

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           K   +G +  +++++VI    
Sbjct: 418 KDMKSGFQALITVDDVIKTVK 438


>gi|304439601|ref|ZP_07399505.1| histidine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371913|gb|EFM25515.1| histidine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 435

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 133/435 (30%), Gaps = 40/435 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP  Q   +N+  II++   R G + +  P L+ A++ +  G  ++  +     
Sbjct: 10  PGFMELLPKDQVVFNNLLDIIKKNFERYGFLPIDTPVLEKAEVLLAKGGGETEKQVYEFT 69

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               D AM +  T       +      S  + PF  YQ+   +R E   +    R REF 
Sbjct: 70  KGTTDIAMRFDLTVPLARYTV---EHFSDLHFPFKRYQVGKVYRGERAQKG---RYREFY 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             D            +      V Y         K          + G       +   +
Sbjct: 124 QCDIDIIGNGKISLVNDAECPAVIYSIFREFDFGKFTIHINNRKILNGFFK---SLEVKS 180

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA------------ATSDVHN 264
            E  +          + +   + D I   +  +E+  +                  +  N
Sbjct: 181 SEEVMRIVDKLDKIGVDNVKEELDKIGMSSENIEKLISFIGIDGTKEEILDALKKLNCDN 240

Query: 265 EKLFDSLPENKRVSARGIEVG----------HIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           E     + E + V       G           I      Y+  +  TF     +   V  
Sbjct: 241 EDFKQGVEELEAVVKYMRAYGVDDDYFNIDLKIARGLDYYTGTVYETFLDDHRELGSVSS 300

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---------QVCRDAC 365
           G             +         +        ++ LI  K +          +   +  
Sbjct: 301 GGRYDNLAGYYTTNLMPGVGMSIGLTRLFSKMQELDLIKKKGNKVSDIIIIPMESTIEKS 360

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            +I A+L K G          ++G +F  AD L     +++G   +  +   +K+  TG 
Sbjct: 361 IEILAKLQKAGISTTIYTESGKMGKKFKYADALDIKYALVIGENELESNVFGLKNMETGD 420

Query: 426 REDMSLEEVINYASH 440
           +E++SLE++I+  S 
Sbjct: 421 QEELSLEDIIDKFSK 435


>gi|317495322|ref|ZP_07953692.1| glycyl-tRNA synthetase [Gemella moribillum M424]
 gi|316914744|gb|EFV36220.1| glycyl-tRNA synthetase [Gemella moribillum M424]
          Length = 457

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/437 (13%), Positives = 136/437 (31%), Gaps = 41/437 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     + +      +   W  SG   ++   M+   
Sbjct: 28  WDYGPLGIELKNNIKRAWWKKFIQESPYNVGLDAAIFMNPRTWEASGHVGNFSDPMMDCK 87

Query: 98  --------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD--ELRPRF 147
                   D+  +   +   +E+V+ D                   +    D   +R   
Sbjct: 88  SCKSRLRADKLIEEYYFKEKNEDVVVDGLPFEELENIIERENIKCPECGKHDFTNIRQFN 147

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAES 199
            + ++ + +++++ S       +       F +  R   +         G          
Sbjct: 148 LMFKTNQGVVENSTSQIYLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPG 207

Query: 200 GPIGGDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
             I      E     F  +  T        KD  +  +       ++I   +   E+ + 
Sbjct: 208 NFIFRTREFEQMELEFFCVPGTELDWHKAWKDTCENWLLDLGMTKENIRLRDHDPEELSH 267

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYV 312
              AT+D+   K      E   +++R       H+ + G   +     T      + +  
Sbjct: 268 YSNATTDI-EFKFPFGWGELWGIASRTDYDLKQHMEHSGQDMTYQDLLT-----NEKYIP 321

Query: 313 QMGSYGIGAMRVVAAVIESSH------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                 +G  RV+ A +  ++      +                   I    +   D   
Sbjct: 322 YCIEPSVGVDRVLLAFLCDAYNEEEVGENDTRTVLKFHPVLAPYKAAILPLSKKLSDKAS 381

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++Y++L      V +D+ G  IG ++   D +G P  +    +  +D  V ++ R T  +
Sbjct: 382 EVYSQL-AADFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFESENDGMVTVRERDTMEQ 439

Query: 427 EDMSLEEVINYASHRFS 443
             +++ E+  Y   R  
Sbjct: 440 TRIAISELKQYIEERVK 456


>gi|168180987|ref|ZP_02615651.1| glycyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|226950974|ref|YP_002806065.1| glycyl-tRNA synthetase [Clostridium botulinum A2 str. Kyoto]
 gi|182668133|gb|EDT80112.1| glycyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|226842596|gb|ACO85262.1| glycine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
          Length = 463

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/441 (15%), Positives = 144/441 (32%), Gaps = 49/441 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +  +WV SG    +   ++   
Sbjct: 34  WDYGPLGVELKNNVKKAWWKKFVQESPYNVGLDAAILMNNQVWVASGHVGGFSDPLMDCK 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKS--YRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           +            EE MT+       +  + N     Y                   R+F
Sbjct: 94  EC-KARFRADKLVEEHMTEQGVEKASADGWSNEKLKQYIDDNGIECPKCKAKNFTDIRKF 152

Query: 156 LMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
            +       +T +     Y        +FV++  +      K     A+ G    +    
Sbjct: 153 NLMFKTFQGVTEDAKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRNEITP 212

Query: 209 ---------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                          EF     T        KD+    + +   + + I   +   E+ +
Sbjct: 213 GNFTFRTREFEQMELEFFCKPGTDLEWFNYWKDYCWNFLINLGINKESIRFRDHSQEELS 272

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGA-DGKDHY 311
               ATSD+          E   V+ R       F              +      + + 
Sbjct: 273 HYSNATSDI-EFLFPFGWGELWGVADR-----TDFDLKKHMEHSGEDLNYLDPATKERYV 326

Query: 312 VQMGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCR 362
                  +GA RVV A +  ++D            +    ++APFK +++ +        
Sbjct: 327 PYCIEPSLGADRVVLAFLVDAYDEEELEGGDVRNVLHLHPALAPFKAAVLPLSKK---LS 383

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D  +++Y+ LSK   ++ +D+ G  IG ++   D +G P  + V    + D+ V I+ R 
Sbjct: 384 DKSQEVYSMLSKK-FNIDYDEAG-SIGKRYRREDEIGTPYCITVDFDTLEDNTVTIRDRD 441

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +  +++ E+  +   +  
Sbjct: 442 TMNQIRVNINELEKFIEDKLE 462


>gi|195331460|ref|XP_002032419.1| GM23523 [Drosophila sechellia]
 gi|194121362|gb|EDW43405.1| GM23523 [Drosophila sechellia]
          Length = 1094

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 10/174 (5%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R I+     + G  +S      ++  + +       +      R +  +I    D +G++
Sbjct: 815 RAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVYQNSWGLTTRTIGVMIMVHADNQGLV 874

Query: 340 WPDSVAPFKISLIN----IKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGE-QIGSQ 391
            P  VA  +  ++     +   D       DAC+ +  RL   G     D       G +
Sbjct: 875 LPPHVACIQAIVVPCGITVNTKDDERAQLLDACKALEKRLVGGGVRCEGDYRDNYSPGWK 934

Query: 392 FAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           F   +L G PL++ VG K +   + V ++ R TG +  + L +V          
Sbjct: 935 FNHWELKGVPLRLEVGPKDLKAQQLVAVR-RDTGEKITIPLADVEKKIPALLET 987


>gi|218296421|ref|ZP_03497164.1| glycyl-tRNA synthetase [Thermus aquaticus Y51MC23]
 gi|218243215|gb|EED09746.1| glycyl-tRNA synthetase [Thermus aquaticus Y51MC23]
          Length = 506

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/492 (13%), Positives = 135/492 (27%), Gaps = 77/492 (15%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAII--REEQNRTGAIEMSVPTLQSADL 79
           R G I Q +      +G+Y + PLG +  +N+      R    R     +    L    +
Sbjct: 15  RRGFIFQSAEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLV 74

Query: 80  WVESGRYDSYGKEMLRL---ADRNDKAMIYGPTHEEV---------------MTDIFRSH 121
              SG   ++   M+       R     +     EEV                  +    
Sbjct: 75  LHYSGHEATFADPMVDNRITKKRYRLDHLLKEQPEEVLRRLFRAMEVEEGNLHALVQAMM 134

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP-------EGSKHSY 174
               R        + +         +   R    + K                  +    
Sbjct: 135 TFPERAGGAMTAAMVVDPATGEPGDWTPPRYFNMMFKTYVGPVEDEAGLAYLRPETAQGI 194

Query: 175 NKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLSHEFI---VLADTGETQVFC 223
              F + L    R         G            I      E +        GE + + 
Sbjct: 195 FINFKNVLDTTSRKLPFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDERWH 254

Query: 224 SKDFMD-FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR-- 280
                +      E     + +       +  A YA  +     +    L E + ++ R  
Sbjct: 255 RYWVEERLKWWQEMGLSRENLVAYQQSPEELAHYAKATVDLLYRFPHGLEELEGIANRTD 314

Query: 281 ---------GIEVG-HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                      E+G        +++    A      G+     +     G  R V A++ 
Sbjct: 315 FDLGSHTKDQEELGITARVLRNEHATQRLAYRDPETGRWFVPYVIEPSAGVDRGVLALLA 374

Query: 331 SSHDGKGIIWPDSVA---------PFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVF 380
            +   + +   +            P K+++I +  +     +  +++ ARL  +G   V 
Sbjct: 375 EAFTREELPSGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLQALGLGRVL 434

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS---------KVEIKHRLTGIREDMSL 431
           ++D G  IG  +   D +G P  V V    +             V ++ R T  +  + +
Sbjct: 435 YEDTG-NIGKAYRRHDEVGTPFAVTVDYDTLGQGKDGTSKLKDTVTVRDRDTMEQIRLHV 493

Query: 432 EEVINYASHRFS 443
           +E+  +   +  
Sbjct: 494 DELEGFLKEKLR 505


>gi|239827844|ref|YP_002950468.1| histidyl-tRNA synthetase [Geobacillus sp. WCH70]
 gi|259511950|sp|C5D510|SYH_GEOSW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|239808137|gb|ACS25202.1| histidyl-tRNA synthetase [Geobacillus sp. WCH70]
          Length = 423

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/407 (15%), Positives = 117/407 (28%), Gaps = 16/407 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I R+   R    E+  P  +  +L++       D   KEM    DR  ++M   
Sbjct: 20  WQYVEKIARDICKRYNYHEIRTPIFEHTELFLRGVGDTTDIVQKEMYTFEDRAGRSMTLR 79

Query: 108 PTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   F  + +    N P   Y I   FR E        +  +F ++        
Sbjct: 80  PEGTAPVVRSFVENKMYGNPNQPIKLYYIGPMFRYERPQAGRFRQFVQFGVEA--IGSND 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCS 224
           P             Y  +  +     I    +  +         +    +   E    C 
Sbjct: 138 PAIDAEVIAMAMELYRSLGLKKLRLVINSLGDVETRKAHRQALID-HFKSRIHELCEDCQ 196

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENKR 276
                 P+   +   D    L +            S  + EK+   L         + + 
Sbjct: 197 VRLEKNPLRILDCKKDRDHELMATAPSILDYLNDESRHYFEKVKAYLTKLGIPFEVDPRL 256

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V          F   +      + T     G+   +     G     +  A+        
Sbjct: 257 VRGLDYYHHTTFEIMSDAEGFGAITTLCGGGRYSGLVQEIGGPETPGIGFALSIERLLAA 316

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                 ++   +     + A  +  +D    +  +L K G     D    +I +Q   AD
Sbjct: 317 LEAEGITLPISEGIDCYVVAVGEKAKDESILLVHKLRKAGIVADKDYQDRKIKAQLKSAD 376

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            L      I+G   ++   + IK   TG + ++ L  V++Y   R S
Sbjct: 377 RLNAKFVAILGDDELAKEVINIKEMSTGEQTEVPLHSVVDYLKERLS 423


>gi|295839019|ref|ZP_06825952.1| glycine-tRNA ligase [Streptomyces sp. SPB74]
 gi|295827291|gb|EFG65335.1| glycine-tRNA ligase [Streptomyces sp. SPB74]
          Length = 460

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/437 (13%), Positives = 131/437 (29%), Gaps = 46/437 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +R   + +    + + ++WV SG   ++     E  
Sbjct: 33  WDYGPLGVELKENIKRNWWRYMVTSRDDVVGLDSSVILATEVWVASGHVATFSDPLTECT 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R     +     E+                             E +   G++ +  
Sbjct: 93  SCHKRYRADHLEEAYEEKHGHLPTGGLADL-----NCPNCGNKGTFTEPKQFSGLLETHL 147

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------LGLKSIPMRAESGPIGG-- 204
              +D  S       +       F        R        +G            I    
Sbjct: 148 GPTQDTGSVAYLRPETAQGIFTNFAQVKLTSRRKPPFGIAQMGKSFRNEITPGNFIFRTR 207

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V     E       +             +++       E+ +     T+D
Sbjct: 208 EFEQMEMEFFVKPGEDEKWQEYWMEQRWNWYTGLGLREENMRWFEHPKEKLSHYSKRTAD 267

Query: 262 VHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYG 318
           +     F      E + V+ R              +     +++    G++    +    
Sbjct: 268 IEYRFQFGGSEWGELEGVANRTDYDLSAHA----KASGQDLSYRDQEAGENWTPYVIEPA 323

Query: 319 IGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G  R + A +  ++                 +     +AP K +++ + + +       
Sbjct: 324 AGVGRTMLAFMLDAYAEDEAPNAKGKLEKRVVMRLDPRLAPVKAAVLPL-SRNPELSPKA 382

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + + A L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R T  
Sbjct: 383 KSLAAALRQHW-NIDFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRERDTMK 440

Query: 426 REDMSLEEVINYASHRF 442
           +E +SL+++  Y S R 
Sbjct: 441 QERVSLDQIEGYLSSRL 457


>gi|319651676|ref|ZP_08005803.1| histidyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317396743|gb|EFV77454.1| histidyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 424

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/409 (13%), Positives = 115/409 (28%), Gaps = 18/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    RE   +    E+  P  +  +L++ S     D   KEM    DR  +++   
Sbjct: 20  WQLIEEKARELCEKFQYREIRTPIFEHTELFLRSVGDTTDIVQKEMYTFEDRGGRSLTLR 79

Query: 108 PTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P         F    +    + P   Y +   FR E        +  +F ++        
Sbjct: 80  PEGTASAVRSFVEHKMYGDASQPVKLYYMGPMFRYERPQAGRFRQFVQFGVEA--IGSAD 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF---IVLADTGETQVFC 223
           P             Y  +  +     +    +          E      +   GE    C
Sbjct: 138 PAIDAEVIALAMSLYRSMGLQKLKLIVNSLGDKES--RSAHREALVNHFMPRIGEFCQDC 195

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL--------FDSLPENK 275
                  P+   +   D    L              S  + EK+         D + +  
Sbjct: 196 QNRLEKNPMRILDCKQDREHELMKSAPSIIDYLNDDSKTYFEKVQKYLKNLDIDFIVDPN 255

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V          F   +      + T     G+ + +     G  A  +  A+       
Sbjct: 256 LVRGLDYYNHTAFEIMSDSEGFGAITTLCGGGRYNGLTEEIGGPEAPGIGFALSVERFIA 315

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   K     + +  +  +D    +  +L   G     D +  +I +QF  A
Sbjct: 316 ALEAEKVDLPLNKDIDCYLVSLGEEAKDYTVGLLQKLRMAGYSAERDYLDRKIKAQFKAA 375

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D        ++G   +  +K+ +K   +G + ++ L+  I   +  + +
Sbjct: 376 DRSNAKFVAVLGEDELKANKINVKSMESGEQTELGLDSFIEKFTELYQS 424


>gi|32476484|ref|NP_869478.1| glycyl-tRNA synthetase [Rhodopirellula baltica SH 1]
 gi|32447029|emb|CAD78935.1| glycyl-tRNA synthetase [Rhodopirellula baltica SH 1]
          Length = 558

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 116/357 (32%), Gaps = 39/357 (10%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D   +   T + +  +       S   +PF   Q+   FR+E+ PR    RSREF   + 
Sbjct: 228 DTTFLRPETAQGIFVNFKNVVDSSRVRIPFGIGQVGKSFRNEITPRNFTFRSREFEQMEI 287

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F   P  S+  Y       +  + +LGL +         I  +   E +     G   
Sbjct: 288 EFFCH-PNQSQEWYRYWRDRRMAWYTKLGLSNE------SLIMREHHTEELAHYSVGTAD 340

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
           +  +  F+      E          +           AT+ +  E      P+       
Sbjct: 341 IEYAFPFLPEGEYGELEGIAHRGDFDLRSHMEGKLDPATNPMTVELNEHGKPK------- 393

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------D 334
                       + S    A       +     +     GA R   A +  ++      D
Sbjct: 394 -----------HRGSGKDLAYRDDITNEKFVPHVIEPSAGADRAALAFLCEAYTEDEAPD 442

Query: 335 GKGIIWPDSVAPFKISLINIKA------HDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
             G +   +V      L  IKA            +  ++IY  L +   +VF+D  G  +
Sbjct: 443 ENGKMQTRTVMKLDPRLAPIKAAVFPLVKKDGMPEVAQEIYGALKEH-YNVFYDAKGA-V 500

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G ++   D  G P  + V    ++D  V I+ R T  +  + +++V++    R   +
Sbjct: 501 GRRYRRQDEAGTPYCITVDGDSLTDKTVTIRDRDTLEQTRVKIDDVVSEIQSRMKAS 557



 Score = 44.7 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 22/92 (23%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP--------- 72
           R G + Q S      +G + + PLG +   N+      +    G  E+  P         
Sbjct: 32  RRGFLFQSSEIYGGVQGFWDYGPLGVELKRNLKDAWWHDMIS-GHNELVSPAGAPSTFEM 90

Query: 73  ------TLQSADLWVESGRYDSYGKEMLRLAD 98
                  +    +W  SG YD +   M+   +
Sbjct: 91  VGLDCTIIMHPQVWKCSGHYDLFHDHMVDCRE 122


>gi|14521875|ref|NP_127351.1| histidyl-tRNA synthetase [Pyrococcus abyssi GE5]
 gi|13878794|sp|Q9UY31|SYH_PYRAB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|5459095|emb|CAB50581.1| hisS histidyl-tRNA synthetase [Pyrococcus abyssi GE5]
          Length = 431

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 127/443 (28%), Gaps = 43/443 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           MI +  KG   +LP        V   IRE     G  E+  P ++   L+   SG  +  
Sbjct: 1   MIERV-KGTRDFLPEEMVKRRWVFEKIREVFETYGFKEVLTPVMEYTKLFQLRSG--EEV 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            K++    D+  + +   P     +  ++ +  ++       +Y   +   +E +     
Sbjct: 58  VKQLYAFKDKGGRDVALRPDMTSSVARLYVNSFQTAPKPIKWYYIANMFRYEEPQSG--- 114

Query: 150 MRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLG----------LKSIPMRAE 198
            R REF              +          SYL    +             +   M   
Sbjct: 115 -RYREFWQAGVELIGSDKIEADAEVIALFVDSYLSTGLKDFTVNIGDRVLLDEFAKMLGV 173

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-----EQWT 253
              IG     +        E      +  +D     +  +  +I      V     E +T
Sbjct: 174 KDDIGLMRIIDKKDKLSQEEFLKALGEFGLDENGIEKVLNLIEIKGKPDDVLPLAEELFT 233

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----DGKD 309
           +  A         L D L   +      I++G    F    S+   A             
Sbjct: 234 SERAKEEISRLYNLVDILSWYEVDEWIQIDLGIARGFDYYTSIVFEAIVPNDLGIGSIGG 293

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK-----ISLINIKAHDQVCRDA 364
                    +   +   A   +    + I   +             +  I   D   RD 
Sbjct: 294 GGRYDNLIEVFGGKPTPATGFAIGIERLIPILEWKGLLPELKAGPDVFVIPVGDS--RDV 351

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKH 420
              I  RL K G     +      G +   A    + +G  L +IVG + +    V I+ 
Sbjct: 352 ATAIVTRLRKAGIRSDIELS----GRKLRKALDYANRIGVRLSIIVGKRDLERGVVTIRD 407

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
             +G + ++ ++ V+       +
Sbjct: 408 LESGNQVEVPVDNVVTKVRELLN 430


>gi|327543225|gb|EGF29659.1| glycyl-tRNA synthetase [Rhodopirellula baltica WH47]
          Length = 555

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 116/357 (32%), Gaps = 39/357 (10%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D   +   T + +  +       S   +PF   Q+   FR+E+ PR    RSREF   + 
Sbjct: 225 DTTFLRPETAQGIFVNFKNVVDSSRVRIPFGIGQVGKSFRNEITPRNFTFRSREFEQMEI 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F   P  S+  Y       +  + +LGL +         I  +   E +     G   
Sbjct: 285 EFFCH-PNQSQEWYRYWRDRRMAWYTKLGLSNE------SLIMREHHTEELAHYSVGTAD 337

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
           +  +  F+      E          +           AT+ +  E      P+       
Sbjct: 338 IEYAFPFLPEGEYGELEGIAHRGDFDLRSHMEGKLDPATNPMTVELNEHGKPK------- 390

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------D 334
                       + S    A       +     +     GA R   A +  ++      D
Sbjct: 391 -----------HRGSGKDLAYRDDITNEKFVPHVIEPSAGADRAALAFLCEAYTEDEAPD 439

Query: 335 GKGIIWPDSVAPFKISLINIKA------HDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
             G +   +V      L  IKA            +  ++IY  L +   +VF+D  G  +
Sbjct: 440 ENGKMQTRTVMKLDPRLAPIKAAVFPLVKKDGMPEVAQEIYGALKEH-YNVFYDAKGA-V 497

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G ++   D  G P  + V    ++D  V I+ R T  +  + +++V++    R   +
Sbjct: 498 GRRYRRQDEAGTPYCITVDGDSLTDKTVTIRDRDTLEQTRVKIDDVVSEIQSRMKAS 554



 Score = 44.7 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 22/92 (23%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP--------- 72
           R G + Q S      +G + + PLG +   N+      +    G  E+  P         
Sbjct: 29  RRGFLFQSSEIYGGVQGFWDYGPLGVELKRNLKDAWWHDMIS-GHNELVSPAGAPSTFEM 87

Query: 73  ------TLQSADLWVESGRYDSYGKEMLRLAD 98
                  +    +W  SG YD +   M+   +
Sbjct: 88  VGLDCTIIMHPQVWKCSGHYDLFHDHMVDCRE 119


>gi|303233759|ref|ZP_07320413.1| glycine--tRNA ligase [Finegoldia magna BVS033A4]
 gi|302495193|gb|EFL54945.1| glycine--tRNA ligase [Finegoldia magna BVS033A4]
          Length = 465

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/441 (11%), Positives = 132/441 (29%), Gaps = 48/441 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +N+     ++  +     + +    L +   WV SG    +   ++   
Sbjct: 35  WDYGSLGVEIKNNIKRAWWKKFIQQSPYNVGLDAAILMNPQTWVVSGHVGGFSDPLIDCK 94

Query: 98  --------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP---R 146
                   D+  +       +EE+     +S  +    +     +     +         
Sbjct: 95  ECKSRFRADKLIEDYYMNEKNEEITGLDGKSEQELLDIIEKEDIKCPDCGKHNFTDIRKF 154

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKS 192
             + ++ + + +D  S       +       F +  R                 R  +  
Sbjct: 155 NLMFKTFQGVTEDNKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEITP 214

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                 +          F       E   +      +F +       ++ + L    ++ 
Sbjct: 215 GNFIFRTREFEQMELEFFCKPGTDLEWFDYWRNFCKEFLLN--LGIREENLRLRDHSQEE 272

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHY 311
            + Y+  +            E   ++ R          G+         +        + 
Sbjct: 273 LSFYSKATTDFEYLFPFGWGELWGIADRTDYDLSKHSEGS----GEKLEYMDPTTNGKYI 328

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCR 362
                  +G  R+  + +  ++D + +             ++A +K++++ +        
Sbjct: 329 PYCIEPSVGVDRMFLSFLCDAYDEEQLEDNTTRTVLKIHPALAAYKVAVLPLTKK---LN 385

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +IY  L        +DD G  IG ++   D  G P  V +    + D+ V I+ R 
Sbjct: 386 DKAMEIYNEL-AKNFMTHFDDAG-SIGKRYRREDEAGTPYCVTIDFDTLEDNTVTIRDRD 443

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  ++ M++EE+I + +    
Sbjct: 444 TMEQKRMTVEEIIEFVNKEME 464


>gi|302545522|ref|ZP_07297864.1| glycine-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302463140|gb|EFL26233.1| glycine-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 460

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/435 (14%), Positives = 135/435 (31%), Gaps = 42/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    + + ++W  SG   ++   +    
Sbjct: 33  WDYGPLGVELKENIKRQWWRSMVTSRDDVVGLDSSVILAREVWEASGHVATFTDPLTECT 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +        E       +       +L    +        E +   G++ +     
Sbjct: 93  SCHKR-FRADHLEEAYEAKHGKLPENGMADL-NCPHCGNKGSFTEPKQFSGLLSTHLGPT 150

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG----- 204
           +D+ S       +       F++  +   R         G            I       
Sbjct: 151 QDSGSVAYLRPETAQGIFTNFLAVQQTSRRKPPFGIAQLGKSFRNEITPGNFIFRTREFE 210

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +  EF V     E       +              +I       E+ +     T+D+  
Sbjct: 211 QMEMEFFVKPGEDEQWHEYWMEQRYNWYRDLGIQESNIRWFEHPKEKLSHYSKRTADIEY 270

Query: 265 EKLFDS--LPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
              F      E + V+ R       H    G   S      F    G+     +     G
Sbjct: 271 RFSFGGSEWGELEGVANRTDYDLKAHSAASGQDLS-----YFDQEAGERWTPYVIEPAAG 325

Query: 321 AMRVVAAVIESSH-------------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
             R + A +  ++                 +     +AP K++++ + + +       + 
Sbjct: 326 VGRAMLAFMLDAYIEDEAPNAKGKLEKRTVMQLDPRLAPVKVAVLPL-SRNPQLSPKAKG 384

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A L K   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R T  +E
Sbjct: 385 LAADLRKHW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRERDTMKQE 442

Query: 428 DMSLEEVINYASHRF 442
            +SL+++ +Y   R 
Sbjct: 443 RVSLDQIQSYLGGRL 457


>gi|150390772|ref|YP_001320821.1| glycyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
 gi|254781872|sp|A6TSJ4|SYG_ALKMQ RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|149950634|gb|ABR49162.1| glycyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 462

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/456 (12%), Positives = 139/456 (30%), Gaps = 54/456 (11%)

Query: 30  GMI---HQHSKGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWV 81
           G I    +   G+   + + PLG +  +NV     ++  +     +      L +   W 
Sbjct: 18  GFIFPGSEIYGGLANTWDYGPLGVELKNNVKKAWWKKFIQQSPYNVGLDSAILMNPTTWE 77

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            SG    +   ++       +        +    D   + +  + N     +  +     
Sbjct: 78  ASGHIGGFSDPLMDCKKCRARFRADKLIEDHFAKDGEDTIVDGWSNEQMASFIDEKAIVC 137

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRI 184
                      R+F +       +  + S   +                           
Sbjct: 138 PECDAKEFTDIRQFNLMFKTHQGVNEDTSTEIFLRPETAQGIFVNFKNVQRTARKKIPFG 197

Query: 185 FHRLGLKSIPMR------AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
             ++G               +          F    D  E   + S     + +  + + 
Sbjct: 198 IGQIGKSFRNEITPGNYTFRTREFEQMELEFFCKPGDDLEWFDYWSNFCKKWLL--DLSM 255

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP- 297
            +  I L +  E+  + Y+  +     K      E   ++ R       F          
Sbjct: 256 KETSIRLRAHTEEELSHYSNATTDIEFKFPFGWGELWGIADR-----TDFDLKQHTEHSG 310

Query: 298 MSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW---------PDSVAPF 347
           +   ++     + +        +GA RV  A +  +++ + I             ++APF
Sbjct: 311 VQLIYQDPVTNEKYVPYCIEPSLGADRVTLAFLVDAYEEEQIDEKDSRIVLKLHPALAPF 370

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           K +++ +       ++   +++ +LS     + +DD G  IG ++   D +G P  +   
Sbjct: 371 KAAVLPLTKK---LKEQSLELFEKLSDK-FMIDYDDAG-SIGKRYRRHDEIGTPYCITYD 425

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              + D+ V ++ R T  ++ ++++E+  +   +  
Sbjct: 426 FDTLEDNCVTVRDRDTMEQQRVAIDELEVFLEEKIK 461


>gi|329769632|ref|ZP_08261036.1| glycyl-tRNA synthetase [Gemella sanguinis M325]
 gi|328838387|gb|EGF87996.1| glycyl-tRNA synthetase [Gemella sanguinis M325]
          Length = 457

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/435 (12%), Positives = 132/435 (30%), Gaps = 41/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     + +      +   W  SG   ++   ML   
Sbjct: 28  WDYGPLGIELKNNIKKAWWKKFIQESPYNVGLDAAIFMNPRTWEASGHVGNFSDPMLDCK 87

Query: 98  --------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD--ELRPRF 147
                   D+  +   +   +E+++ D                   +    D   +R   
Sbjct: 88  VCKSRLRADKLIEEYYFNEKNEDIIVDGLPFEELEAIIERENIKCPECGGHDFTNIRQFN 147

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAES 199
            + ++ + +++++ S       +       F +  R   +         G          
Sbjct: 148 LMFKTNQGVVENSTSVVYLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPG 207

Query: 200 GPIGGDLSHEFIVLADTGET--QVFCSKDFMDFPIPSENT--DFDDIISLNSIVEQWTAP 255
             I      E + L    E   ++   K + D             + I L    ++  + 
Sbjct: 208 NFIFRTREFEQMELEFFCEPGTELEWHKIWKDNCENWLLNLGMTKENIRLRDHEKEELSH 267

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKG-ADGKDHYV 312
           Y+  +     +      E   +++R       H+ + G         T++     +    
Sbjct: 268 YSNATTDIEFRFPFGWGELWGIASRTDYDLKQHMQHSGQD------LTYQNLQTNEKFIP 321

Query: 313 QMGSYGIGAMRVVAAVIESSHDG------KGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                 +G  RV+ A +  +++                         I    +   +   
Sbjct: 322 YCIEPSVGVDRVLLAFLCDAYNEEEVGEGDTRTVLKFHPAIAPYKAAILPLSKKLSEQAT 381

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+Y  L      V +D+ G  IG ++   D +G P  +    +  +D  V ++ R +  +
Sbjct: 382 KVYQEL-AQDFMVDFDETG-SIGKRYRRQDEVGTPFCITYDFESENDGMVTVRDRDSMEQ 439

Query: 427 EDMSLEEVINYASHR 441
             M + E+  Y + +
Sbjct: 440 VRMPISELKQYLTEK 454


>gi|251810982|ref|ZP_04825455.1| glycyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876009|ref|ZP_06284876.1| glycine--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|251805492|gb|EES58149.1| glycyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295034|gb|EFA87561.1| glycine--tRNA ligase [Staphylococcus epidermidis SK135]
          Length = 463

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/442 (11%), Positives = 133/442 (30%), Gaps = 49/442 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++        +      L +   W  SG   ++   M+   
Sbjct: 32  WDYGPLGVELKNNIKKAWWQKFISQSPYNVGIDAAILMNPKTWEASGHLGNFNDPMIDNK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHI-----KSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           D +          E+ M +            S+  +        +         +  +R 
Sbjct: 92  D-SKIRYRADKLIEDYMQNEKGDENFIADGLSFDEMKKIIDDEGIVCPVSKTANWTDIRQ 150

Query: 153 REFLMKDAYSFDLTPEG----SKHSYNKMFVSYLRIFH-----------------RLGLK 191
              + K                  +   +FV+Y  +                   R  + 
Sbjct: 151 FNLMFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEIT 210

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  +          F    +  E Q +      ++    +    +D + L    E 
Sbjct: 211 PGNFIFRTREFEQMELEFFCKPGEEIEWQNYWKTFASEWLT--DLNISEDNMRLRDHDED 268

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             + Y+  +     K      E   +++R           +++S            + + 
Sbjct: 269 ELSHYSNATTDIEYKFPFGWGELWGIASRTDYDLRQH---SEHSGEDFKYHDPETNEKYI 325

Query: 312 VQMGSYGIGAMRVVAAVIESSHD----------GKGIIWPDSVAPFKISLINIKAHDQVC 361
                  +GA RV  A +  ++              + +  ++AP+K +++ +       
Sbjct: 326 PYCIEPSLGADRVTLAFLCDAYAEEGVEGSKDARTVMHFHPALAPYKAAVLPLSKK---L 382

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                KI+ +LS     + +D+  + IG ++   D +G P  +      + D++V ++ R
Sbjct: 383 SSEAIKIFEQLSSS-FAIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTVRDR 440

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            +  +  M + E+  + + +  
Sbjct: 441 DSMEQVRMPISELETFLAEKVK 462


>gi|115305794|sp|Q7UEU9|SYG_RHOBA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
          Length = 536

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 116/357 (32%), Gaps = 39/357 (10%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D   +   T + +  +       S   +PF   Q+   FR+E+ PR    RSREF   + 
Sbjct: 206 DTTFLRPETAQGIFVNFKNVVDSSRVRIPFGIGQVGKSFRNEITPRNFTFRSREFEQMEI 265

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F   P  S+  Y       +  + +LGL +         I  +   E +     G   
Sbjct: 266 EFFCH-PNQSQEWYRYWRDRRMAWYTKLGLSNE------SLIMREHHTEELAHYSVGTAD 318

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
           +  +  F+      E          +           AT+ +  E      P+       
Sbjct: 319 IEYAFPFLPEGEYGELEGIAHRGDFDLRSHMEGKLDPATNPMTVELNEHGKPK------- 371

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------D 334
                       + S    A       +     +     GA R   A +  ++      D
Sbjct: 372 -----------HRGSGKDLAYRDDITNEKFVPHVIEPSAGADRAALAFLCEAYTEDEAPD 420

Query: 335 GKGIIWPDSVAPFKISLINIKA------HDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
             G +   +V      L  IKA            +  ++IY  L +   +VF+D  G  +
Sbjct: 421 ENGKMQTRTVMKLDPRLAPIKAAVFPLVKKDGMPEVAQEIYGALKEH-YNVFYDAKGA-V 478

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G ++   D  G P  + V    ++D  V I+ R T  +  + +++V++    R   +
Sbjct: 479 GRRYRRQDEAGTPYCITVDGDSLTDKTVTIRDRDTLEQTRVKIDDVVSEIQSRMKAS 535



 Score = 44.7 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 22/92 (23%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP--------- 72
           R G + Q S      +G + + PLG +   N+      +    G  E+  P         
Sbjct: 10  RRGFLFQSSEIYGGVQGFWDYGPLGVELKRNLKDAWWHDMIS-GHNELVSPAGAPSTFEM 68

Query: 73  ------TLQSADLWVESGRYDSYGKEMLRLAD 98
                  +    +W  SG YD +   M+   +
Sbjct: 69  VGLDCTIIMHPQVWKCSGHYDLFHDHMVDCRE 100


>gi|152994964|ref|YP_001339799.1| glycyl-tRNA synthetase [Marinomonas sp. MWYL1]
 gi|150835888|gb|ABR69864.1| glycyl-tRNA synthetase [Marinomonas sp. MWYL1]
          Length = 458

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 68/460 (14%), Positives = 147/460 (31%), Gaps = 59/460 (12%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G I Q S      +G Y + PLG +  +N+ A         R     +    +Q+  +
Sbjct: 15  RRGFIFQGSEIYGGMQGAYDYGPLGIELKNNLKAAWWRSMVYERDDVEGLDAAIIQNKHV 74

Query: 80  WVESGRYDSYGKEM---LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           +  SG  D++   M        R     +      +       +  + +  +      + 
Sbjct: 75  YKYSGHEDTFTDPMVDCHECKSRMRADHMKDIKVCDNCGSTNVTEPRDFNLM--FKTNVG 132

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
               +E         ++          D T         ++  S+               
Sbjct: 133 PMVNEESYTYLRPETAQGIFTNFKNVVDSTSRTLPFGIAQIGKSFRNEITPRNFIFRVRE 192

Query: 197 AESG-------PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            E         P   +  HEF V A          + ++D  +  EN  F+ +   +   
Sbjct: 193 FEQMELEFFCKPGEDEKWHEFWVGARK--------QWWLDQGLAEENIQFEYVTGDDL-- 242

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARG-IEVGHIFYFGTK-----------YSLP 297
               A Y+ ++     K      E + V+ R   ++G       +           +S  
Sbjct: 243 ----AHYSKSTVDILYKFPHGFEELEGVANRTDYDLGSHTKAQEEFGLSAKVKKNEHSTA 298

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII---------WPDSVAPFK 348
             A     + K           G  R + AV+  ++  + +          +   +AP K
Sbjct: 299 KLAIRDLEENKWEVPFCIEPSAGLDRGLLAVMTEAYTEEELPNGTSRTVLKFKPHLAPIK 358

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++++ +K +        +++  +L K+G   + +++ G  +G  +   D +G P+ V V 
Sbjct: 359 VAIMPLKKNKPEIVALAKELKNKLQKLGLGRILYENTG-NVGKGYRRHDEVGTPICVTVD 417

Query: 408 SKFVS-DSK-VEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              +  +   V ++ R T  +  +   ++  Y  + F N 
Sbjct: 418 FDSIEQEGAPVTVRDRDTMEQIVVPAADLPAYVINYFINK 457


>gi|256384091|gb|ACU78661.1| glycine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384923|gb|ACU79492.1| glycine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455486|gb|ADH21721.1| glycine--tRNA ligase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 456

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/432 (10%), Positives = 117/432 (27%), Gaps = 35/432 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  + +  +  +   +   + +      + ++ +W  SG  D +   ++   
Sbjct: 32  WDYGPLGCEVKNKLKKVWWDFFVKKNPLNVGLDSSIILNSKVWKASGHIDGFNDPLIDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF-- 155
           +   +        E   +        +          I  K   +         +  F  
Sbjct: 92  NCKSRWRADKLIEEFDSSINTGIMTSAQLEDYIKQNNILCKKCQKKDFTQIRKFALMFKT 151

Query: 156 -----------------LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
                              +  +      + S        +  +    R  +        
Sbjct: 152 NQGVLEDDSSIVYLRPETAQGIFINFKNVQRSMRKKLPFGIGQIGKSFRNEITPGNFIFR 211

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYA 257
           +          F    D  +   +       F         D     +   ++   A YA
Sbjct: 212 TREFEQMELEFFFDPNDQRDWFKYWLDQIELFLTK--KICLDKSNYKIRENLKDELAHYA 269

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             +            E   +S R      +       S       K    +     +   
Sbjct: 270 LKTSDIEFNFPFGWGELWGISHRSDFDLKVHQ---NLSKEDLTVLKEETNQKVLANVIEP 326

Query: 318 GIGAMRVVAAVI------ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
            +G  R++ A+       E   +                 + I    +       +++  
Sbjct: 327 SVGVERLMLAIFWQAYTEEQLEENNSRTVLKLPYNLAPYQVAITPLSKQLNQNANQLFLD 386

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L     D  +D+ G  IG ++   D +G P  +    + + D KV I++R T  +E + +
Sbjct: 387 LL-NDFDAVYDETG-NIGKRYRRQDAIGTPFVITYDFQTLEDQKVTIRYRDTMKQERILI 444

Query: 432 EEVINYASHRFS 443
            ++ ++ + +F+
Sbjct: 445 SQLKDFLNSQFN 456


>gi|70950383|ref|XP_744519.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56524507|emb|CAH79733.1| hypothetical protein PC000457.03.0 [Plasmodium chabaudi chabaudi]
          Length = 333

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 5/160 (3%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R I+     Y GT ++      F+       YV   S+G    R +  +I    D KG+I
Sbjct: 59  RAIQAATSHYLGTNFAKMFKIEFEDEQENKQYVHQTSWGC-TTRSIGVMIMVHSDNKGLI 117

Query: 340 WPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVA 395
            P +VA +K  ++ I      +    + C+ I   L     +  +DD      G +F   
Sbjct: 118 LPPNVAKYKAVIVPILYKNTDETAIFNYCKDIEKILKNAQINCIFDDRDLYSPGYKFNHW 177

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           +L G P+++ VG K + ++      R    + ++  E V+
Sbjct: 178 ELRGIPIRIEVGPKDIQNNSCVFVRRDNNQKFNIKKESVL 217


>gi|325969299|ref|YP_004245491.1| threonyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
 gi|323708502|gb|ADY01989.1| threonyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
          Length = 621

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/420 (13%), Positives = 134/420 (31%), Gaps = 52/420 (12%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPT--LQSADLWVESGRYDSYGKEM----LR 95
           + P     ++ V     +  N  G     +P   ++  +++    R       +    + 
Sbjct: 226 YGPAATLMMELVEDYAWKLANELG-----IPVFKIRGTNMFRRGERAIDEHARLFNERMY 280

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-RFGVMRSRE 154
             + +   +I           + +  + SYR++P    ++   +R E         R R 
Sbjct: 281 TIEGDKDELIMRYAACFQQFAMIKDWVLSYRDIPIGMLEVADSYRYEQPGETVLCFRLRR 340

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D + F    + +     K+     R   +LG   + +   +     D   ++++  
Sbjct: 341 FYMPDLHIFTKDLKNAMDVALKLHEIIFREVRKLGRDYVSLYNVTKQFY-DEHRDYLIEL 399

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              E +            P       +      +  ++              + D L   
Sbjct: 400 AKREGK------------PMLIRIMPEQKYYWVLNVEF-------------HIVDELRRP 434

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESS 332
           + ++    +VG+   FG          ++  +G+  Y  +    I     R + A+++++
Sbjct: 435 REIATFQFDVGNAQRFG--------IKYRDENGEIRYPVIIHTAIIGSVERYIYALLDTA 486

Query: 333 HDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGS 390
              +       +  +   +   +    +       +I +RL      V  DD   E +  
Sbjct: 487 AITESKGEIPRLPTWVSPIQVRVIPISKEHLTFANEIVSRLEDRMIRVDIDDRFDETLAK 546

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN--NRPV 448
           +   A+    P  V++G + V   K+ ++ R      +M ++E  +           RP+
Sbjct: 547 RVRDAETFWVPYIVVIGDREVKTGKLSVRVRGVQKPIEMGIDEFTSKIEEEIKGYPRRPL 606


>gi|310829040|ref|YP_003961397.1| glycyl-tRNA synthetase [Eubacterium limosum KIST612]
 gi|308740774|gb|ADO38434.1| glycyl-tRNA synthetase [Eubacterium limosum KIST612]
          Length = 461

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/437 (12%), Positives = 132/437 (30%), Gaps = 42/437 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P+G +  +NV     ++  +     + +    L +   WV SG    +   ++   
Sbjct: 33  WDYGPIGVEMKNNVKRAWWKKFVQESPYNVGLDAAILMNPKTWVASGHVGGFNDPLMDCK 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        +        + +  + N     +  +   +            R+F +
Sbjct: 93  SCKTRFRADKLIEDYFHAKGEEAVVDGWSNEKMMDFIRENHIKCPECGAEDFTDIRQFNL 152

Query: 158 KDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRAESG 200
                  +T + S   Y                             ++G           
Sbjct: 153 MFKTFQGVTEDSSSEIYLRPETAQGIFVNFKNVQRTTRKKIPFGIGQIGKSFRNEITPGN 212

Query: 201 PIGGDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            I      E     F     T        KDF    + S     +++   +   E+ +  
Sbjct: 213 FIFRTREFEQMELEFFCEPGTDLEWFTYWKDFCRNWLFSLGMKEENVRFRDHEKEELSHY 272

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             AT+DV          E   ++ R           +   +             +   + 
Sbjct: 273 SNATTDV-EFLFPFGWGELWGIADRTDFDLTQHQNVSGKDMQYQDPVTNEK---YLPYVI 328

Query: 316 SYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
              +GA R+  A + ++ +            +    +++ +K +++ +        +   
Sbjct: 329 EPSLGADRMFLAFLCNAMEKETLENGEERNVMKIHPALSAYKAAVLPLSKK---LSEKAT 385

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++YA+L      V +D+ G  IG ++   D +G P+ + V      D+ V ++ R T  +
Sbjct: 386 EVYAQL-AKHFMVDYDEAG-SIGKRYRRQDEIGTPICITVDFDTQEDNAVTLRDRDTMEQ 443

Query: 427 EDMSLEEVINYASHRFS 443
             + ++EV+ Y   +  
Sbjct: 444 VRLPIDEVVGYIEKKMD 460


>gi|297620635|ref|YP_003708772.1| Prolyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
 gi|297375936|gb|ADI37766.1| Prolyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
          Length = 507

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/418 (14%), Positives = 126/418 (30%), Gaps = 58/418 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +N+ + + +    TG   +  P       L  E+   + + KE   +
Sbjct: 39  GCMVIKPWGFGIWENIKSTLDQMIKETGHENVYFPLFIPLSFLEKEAAHVEGFAKECAVV 98

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                +                                           + G +     L
Sbjct: 99  THHRLEE------------------------------------------KDGKLIPTGEL 116

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +       +      S+++   SY  +   +   +  +R E  P     + EF+     
Sbjct: 117 EEPLIVRPTSETIIGDSFSRWVESYRDLPLLINQWANVVRWEMRPRIFLRTSEFLWQ--- 173

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
               V  +K             +  +      +       +A       +   +L E   
Sbjct: 174 EGHTVHATKQEAKEETLKMLEVYRVLAEEVLAIPVILGEKSAGERFPGAESTYTL-EMMM 232

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   Y G  ++      F G +G+  Y    S+G+   R++  +I    D  
Sbjct: 233 QDRKALQGGTSHYLGQNFARAQGIQFSGKEGELEYAYTTSWGV-TTRLIGGMIMCHGDDD 291

Query: 337 GIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARLSK-----VGCDVFWDDMGEQI 388
           G+  P  VAP +I +I +      ++      EK+  ++           V  D    + 
Sbjct: 292 GLRIPPRVAPKQIVIIPVIPKPELEEEVLAFAEKVKQQIISQMFYGKPISVHIDKRDRRG 351

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEI--KHRLTGIREDMSLEEVINYASHRFSN 444
           G +       G P+++ +G + +    V +  + R    +E +SLE +     +  + 
Sbjct: 352 GEKNWEWVKKGVPVRIEIGPRDIESDSVMLARRDRGHKEKEKVSLETLGAIIPNLLNE 409


>gi|262274786|ref|ZP_06052597.1| histidyl-tRNA synthetase [Grimontia hollisae CIP 101886]
 gi|262221349|gb|EEY72663.1| histidyl-tRNA synthetase [Grimontia hollisae CIP 101886]
          Length = 422

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/418 (14%), Positives = 124/418 (29%), Gaps = 28/418 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V   +++  +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKVEGTVKDVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRSREFLM 157
             ++   P            +   Y      +Y     + +   + R R       E   
Sbjct: 75  GDSLTLRPEGTAGCVRAGIENGLLYNQEQRLWYLGPMFRHERPQKGRYRQFHQFGVEVFG 134

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIF---HRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            +    D           +    Y  +    + +G            +   + HE I+  
Sbjct: 135 LNGPDVDAELIMMTARLWRKLGIYEHVRLELNSIGSLEARANYREALVDFLMQHEAILDD 194

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSLPE 273
           D            +D   P       D   L++ +++ +   +A   ++ +         
Sbjct: 195 DCKRRMHTNPLRVLDTKNPDIQAVLSDAPKLSAYLDEDSKQHFAGLCELLDAAGIQYTIN 254

Query: 274 NKRVSARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVA 326
            K V         +F       G + ++     + G              + +G  R+V 
Sbjct: 255 EKLVRGLDYYNRTVFEWITDSLGAQGTVCGGGRYDGLVEQLGGKATPAVGFAMGVERLVL 314

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDM 384
            +   + D         +       +               +   L +   G  V     
Sbjct: 315 LMETLALDETRPAVDVYMVTAGEGTLIAGMK----------LAEALREQVPGLRVMTHFG 364

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G     QF  AD +G  + +++G   V++++V  K    G +  +S +EV +  + R 
Sbjct: 365 GGNFKKQFKRADKVGASVALVLGEDEVANNQVTFKDLKGGEQLTISQDEVADKLAQRV 422


>gi|239637623|ref|ZP_04678595.1| glycyl-tRNA synthetase [Staphylococcus warneri L37603]
 gi|239596841|gb|EEQ79366.1| glycyl-tRNA synthetase [Staphylococcus warneri L37603]
          Length = 463

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/445 (13%), Positives = 140/445 (31%), Gaps = 55/445 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++        + +    L +   W  SG   ++   M+   
Sbjct: 32  WDYGPLGVELKNNVKKAWWQKFITQSPYNVGLDAAILMNPKTWEASGHLGNFNDPMIDNK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHI-----KSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           D +          E+ M              S+  +        +         +  +R 
Sbjct: 92  D-SKIRYRADKLIEDYMQQEKGDENFIADGLSFDEMKKIIADEGIVCPVSGTANWTDIRQ 150

Query: 153 REFLMKDAYSFDLTPEG----SKHSYNKMFVSYLRIFH-----------------RLGLK 191
              + K                  +   +FV+Y  +                   R  + 
Sbjct: 151 FNLMFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQVGKSFRNEIT 210

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  +          F    +  E Q +  K F    +   N   +++   +   ++
Sbjct: 211 PGNFIFRTREFEQMELEFFCKPGEEIEWQNY-WKTFASQWLKDLNISEENMRLRDHDADE 269

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKG-ADGK 308
            +    AT+D+   K      E   +++R       F    K+S        +      +
Sbjct: 270 LSHYSNATTDI-EYKFPFGWGELWGIASR-----TDFDL-KKHSEHSGEDFKYHDPETNE 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSH----------DGKGIIWPDSVAPFKISLINIKAHD 358
            +        +GA RV  A +  ++          +   + +  ++AP+K +++ +    
Sbjct: 323 KYIPYCIEPSLGADRVTLAFLCDAYSQEGVEGSKDERTVLKFHPALAPYKAAILPLSKK- 381

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   KI+ +LS+    + +D+  + IG ++   D +G P  +      + D++V +
Sbjct: 382 --LSSEAIKIFEQLSQS-FSIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTV 437

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R +  +  M + E+  + + +  
Sbjct: 438 RDRDSMEQVRMPISELEAFLAEKVK 462


>gi|293189558|ref|ZP_06608278.1| glycine--tRNA ligase [Actinomyces odontolyticus F0309]
 gi|292821648|gb|EFF80587.1| glycine--tRNA ligase [Actinomyces odontolyticus F0309]
          Length = 462

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 134/434 (30%), Gaps = 39/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+           R   + +    +   ++WV SG   ++   ++   
Sbjct: 35  WDYGPLGVELKENIKRAWWNAMVRRRADVVGLDSSVILPREVWVASGHVKAFTDPLIECL 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           + + +A       E            S  ++      ++ ++  E R   G++++    +
Sbjct: 95  NCHKRARQDQLIEELAEKKGVEESTLSNDDIACPNCGVRGQWT-EPRAFSGLLKTYLGPV 153

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLSHE 209
            D          +       + + +    +         G            I      E
Sbjct: 154 DDEAGLHYLRPETAQGIFINYANVMNAARKKPPFGIGQIGKSFRNEITPGNFIFRTREFE 213

Query: 210 -----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                F     T E       D+      +   D +++       E+ +     T D+  
Sbjct: 214 QMELEFFCEPGTDEEWHQYWIDYRKAWYVNLGIDPENLREYEHPQEKLSHYSKRTVDLEY 273

Query: 265 EKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F      E + ++ R      +    ++ S      F     +     +     G  
Sbjct: 274 RFGFQGSEWGELEGIANRTDYDLTVH---SEASGAKLDYFDPNTKERWTPYVIEPSAGLT 330

Query: 323 RVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           R + A +  ++                       +AP K +++ +    ++     +++ 
Sbjct: 331 RSLMAFLIEAYHEDEAPNAKGGVDKRVVLKLDPRLAPVKAAVLPLSRKPELTGP-AQELA 389

Query: 370 ARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             L   G  +V +DD G  +G ++   D +G P  +      + D  V I+ R T  +  
Sbjct: 390 DELR--GIWNVDYDDAGA-VGRRYRRQDEIGTPFCITYDFDSIEDHAVTIRERDTMEQVR 446

Query: 429 MSLEEVINYASHRF 442
           + L++V +Y   R 
Sbjct: 447 IPLDKVKSYLIERL 460


>gi|154509410|ref|ZP_02045052.1| hypothetical protein ACTODO_01941 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799044|gb|EDN81464.1| hypothetical protein ACTODO_01941 [Actinomyces odontolyticus ATCC
           17982]
          Length = 462

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 133/434 (30%), Gaps = 39/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+           R   + +    +   ++WV SG   ++   ++   
Sbjct: 35  WDYGPLGVELKENIKRAWWNAMVRRRADVVGLDSSVILPREVWVASGHVKAFTDPLIECL 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           + + +A       E            S  ++      ++ ++  E R   G++++    +
Sbjct: 95  NCHKRARQDQLIEELAEKKGVEESSLSNADIACPNCGVRGQWT-EPRAFSGLLKTYLGPV 153

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLSHE 209
            D          +       + + +    +         G            I      E
Sbjct: 154 DDEAGLHYLRPETAQGIFINYANVMNAARKKPPFGIGQIGKSFRNEITPGNFIFRTREFE 213

Query: 210 -----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                F     T E       D+          D +++       E+ +     T D+  
Sbjct: 214 QMELEFFCEPGTDEEWHQYWIDYRKAWYVDLGIDPENLREYEHPQEKLSHYSKRTVDLEY 273

Query: 265 EKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F      E + ++ R      +    ++ S      F     +     +     G  
Sbjct: 274 RFGFQGSEWGELEGIANRTDYDLTVH---SEASGAKLDYFDPNTKERWTPYVIEPSAGLT 330

Query: 323 RVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           R + A +  ++                       +AP K +++ +    ++     +++ 
Sbjct: 331 RSLMAFLIEAYHEDEAPNAKGGVDKRVVLKLDPRLAPVKAAVLPLSRKPELTGP-AQELA 389

Query: 370 ARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             L   G  +V +DD G  +G ++   D +G P  +      + D  V I+ R T  +  
Sbjct: 390 DELR--GIWNVDYDDAGA-VGRRYRRQDEIGTPFCITYDFDSIEDHAVTIRERDTMEQVR 446

Query: 429 MSLEEVINYASHRF 442
           + L++V +Y   R 
Sbjct: 447 IPLDKVKSYLIERL 460


>gi|302518917|ref|ZP_07271259.1| glycyl-tRNA synthetase [Streptomyces sp. SPB78]
 gi|318059913|ref|ZP_07978636.1| glycyl-tRNA synthetase [Streptomyces sp. SA3_actG]
 gi|318081299|ref|ZP_07988631.1| glycyl-tRNA synthetase [Streptomyces sp. SA3_actF]
 gi|333027254|ref|ZP_08455318.1| putative glycyl-tRNA synthetase [Streptomyces sp. Tu6071]
 gi|302427812|gb|EFK99627.1| glycyl-tRNA synthetase [Streptomyces sp. SPB78]
 gi|332747106|gb|EGJ77547.1| putative glycyl-tRNA synthetase [Streptomyces sp. Tu6071]
          Length = 460

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/437 (13%), Positives = 131/437 (29%), Gaps = 46/437 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +R   + +    + + ++WV SG   ++     E  
Sbjct: 33  WDYGPLGVELKENIKRNWWRYMVTSRDDVVGLDSSVILATEVWVASGHVATFSDPLTECT 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R     +     E+                             E +   G++ +  
Sbjct: 93  SCHKRYRADHLEEAYEEKHGHLPPGGLADL-----NCPNCGNKGTFTEPKQFSGLLETHL 147

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------LGLKSIPMRAESGPIGG-- 204
              +D  S       +       F        R        +G            I    
Sbjct: 148 GPTQDTGSVAYLRPETAQGIFTNFAQVKLTSRRKPPFGIAQMGKSFRNEITPGNFIFRTR 207

Query: 205 ---DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               +  EF V     E       +             +++       E+ +     T+D
Sbjct: 208 EFEQMEMEFFVKPGEDEKWQEYWMEQRWNWYTGLGLREENMRWFEHPKEKLSHYSKRTAD 267

Query: 262 VHNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYG 318
           +     F      E + V+ R              +     +++    G++    +    
Sbjct: 268 IEYRFQFGGSEWGELEGVANRTDYDLSAHA----KASGQDLSYRDQEAGENWTPYVIEPA 323

Query: 319 IGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQVCRDAC 365
            G  R + A +  ++                 +     +AP K +++ + + +       
Sbjct: 324 AGVGRTMLAFMLDAYAEDEAPNAKGKLEKRVVMRLDPRLAPVKAAVLPL-SRNPELSPKA 382

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           + + A L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R T  
Sbjct: 383 KSLAAALRQHW-NIDFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRERDTMK 440

Query: 426 REDMSLEEVINYASHRF 442
           +E +SL+++  Y S R 
Sbjct: 441 QERVSLDQIEGYLSARL 457


>gi|312877307|ref|ZP_07737274.1| histidyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795940|gb|EFR12302.1| histidyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 421

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/420 (16%), Positives = 121/420 (28%), Gaps = 23/420 (5%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEM 93
           P G K            V    RE     G  E+  PT +  +L+        D   KEM
Sbjct: 6   PKGTKDVLPEESYMWQYVENKFREICKLYGYQEVRFPTFEYTELFQRGVGETTDIVQKEM 65

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
               D+  +++   P        +F  H  + R +P  FY I   FR E           
Sbjct: 66  YTFLDKGGRSITLRPEGTASTARLFIEHGFASRPMPQRFYYIISAFRYENTQGGRFREFH 125

Query: 154 EFLMKDAYSFDL-TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           +F +++  S    T           F S       + + SI   A       +L   F  
Sbjct: 126 QFGIENFGSSSPVTDAEVISLAYNFFTSIGLDNITVNINSIGCPACRKEYVKNLKEYFSA 185

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            +        C +     P+   +   +    +     +           H E +   L 
Sbjct: 186 NSQKLCHT--CHQRLDKNPMRILDCKEEGCKLIAKDAPKPIDYLCDDCKSHFESVKTYLD 243

Query: 273 ENKRV------SARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
               V        RG++     +F      S    A   G    +   Q+G   I  +  
Sbjct: 244 SAMVVYKVDPFIVRGLDYYTKTVFEIVAPVSDKDLAICGGGRYDNLIEQIGGNSIPGIGF 303

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              V       +      +        +      +       +I   L   G     ++M
Sbjct: 304 AIGVERLLMLLEQNGLLPARPQVPQVFVATVG--ENSLKEAFEIARMLRFEGISTIIEEM 361

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G  + SQ   AD +G    +I+G   ++    +I++  T     + +E V  Y   +   
Sbjct: 362 GRSLKSQMKYADKIGCQFSIIIGDDEIAKGVCKIRNMRTSSEGIVEIENVCQYLKEKLQK 421


>gi|312623087|ref|YP_004024700.1| histidyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203554|gb|ADQ46881.1| histidyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 421

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/417 (15%), Positives = 120/417 (28%), Gaps = 17/417 (4%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEM 93
           P G K            V    RE     G  E+  PT +  +L+        D   KEM
Sbjct: 6   PKGTKDVLPEESYMWQYVENKFREICKLYGYQEVRFPTFEYTELFQRGVGDTTDIVQKEM 65

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
               D+  +++   P        +F  H  + R +P  FY I   FR E           
Sbjct: 66  YTFLDKGGRSITLRPEGTASTARLFIEHGFASRPMPQRFYYIISAFRYENTQGGRFREFH 125

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F +++  S     +    S    F + L + +     +                E+   
Sbjct: 126 QFGIENFGSSSPVTDAEVISLAYNFFASLGLDNITVNINSIGCPVCRKEYVKNLKEYFSA 185

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                    C +     P+   +   +D   +     +           H E +   L  
Sbjct: 186 NSQKLCHT-CHQRLDKNPMRILDCKEEDCKLIAKDAPKPIDYLCDDCKSHFESVKTYLDS 244

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD------GKDHYVQMGSYGIGAMRVVAA 327
                     +     + TK    + AT    +      G+   +     G     +  A
Sbjct: 245 AMVSYKVDPYIVRGLDYYTKTVFEIVATVSDKELAICGGGRYDNLIEQIGGNSTPGIGFA 304

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +                A  ++  + +    +       +I   L   G     ++MG  
Sbjct: 305 IGVERLLMLLEQNGLLPARSQVPRVFVATIGENGIKKAFEIARMLRFEGISTVVEEMGRS 364

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + SQ   AD +G    +I+G   +     ++++  T   E + +E +  Y   +   
Sbjct: 365 LKSQMKYADKIGCEFSIIIGDDEIEKGVCKVRNMKTSSEEIVEIENICEYLKEKLQK 421


>gi|42522689|ref|NP_968069.1| glycyl-tRNA synthetase [Bdellovibrio bacteriovorus HD100]
 gi|59798543|sp|Q6MNT9|SYG_BDEBA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|39573885|emb|CAE79062.1| glycyl-tRNA synthetase [Bdellovibrio bacteriovorus HD100]
          Length = 446

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 68/445 (15%), Positives = 135/445 (30%), Gaps = 47/445 (10%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLW 80
           R G + Q S    G+   + + PLG     NV         R    + +    L    +W
Sbjct: 18  RRGFVFQSSEIYGGLGSCWDYGPLGSLMKLNVKRAWWNAMTRRPDIVGLDAAILMHPMVW 77

Query: 81  VESGRYDSYGKEMLRLADR--NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
             SG  D +   ++   +     +A        E       S   S     F        
Sbjct: 78  KASGHVDGFSDPLVDCKECKTRFRADNTDSYINEKKCPNCGSKNLSEER-SFNLMFKTHM 136

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
              E      V+  R    +  +      + +        ++ +    R  +        
Sbjct: 137 GPLEDSG--SVVYLRPETAQGHFVNFQNCQQASRYKIPFGIAAIGKSFRNEITPGNFIFR 194

Query: 199 SGPIGGDLSHEFIVLADT----GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           +          F+          E +      ++ F I  EN  F D   L        A
Sbjct: 195 TREFEQMEMQYFVEPGTDEQFFKEWKERRWNFYIKFGIKPENLKFKDHDKL--------A 246

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGADGKD-HYV 312
            YA  +     K      E + +  R       F           +  +     K  +  
Sbjct: 247 HYAKAAVDVEFKFPMGFSELEGIHNRS-----DFDLSQHMKFSGKNLEYFDEPNKKKYIP 301

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIKAHDQ 359
            +    +G  R+  A +  ++  +              +     +APFK++++ +    +
Sbjct: 302 YVIETAVGCDRLFLAFLCDAYREEVTTDEAGKEDVRVVMGLHPEIAPFKVAVLPLSKK-E 360

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 EK+  +L     DV +D+  + IG ++   D +G P  V V    ++D  V ++
Sbjct: 361 ELSSISEKLRDQL-AEDFDVNYDES-QSIGKRYRRQDEIGTPFCVTVDFDTINDQAVTVR 418

Query: 420 HRLTGIREDMSLEEVINYASHRFSN 444
           HR    +E +++ ++  Y + +   
Sbjct: 419 HRDKMTQERVAITQLNAYIAAKLKT 443


>gi|307292835|ref|ZP_07572681.1| Proline--tRNA ligase [Sphingobium chlorophenolicum L-1]
 gi|306880901|gb|EFN12117.1| Proline--tRNA ligase [Sphingobium chlorophenolicum L-1]
          Length = 527

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/444 (15%), Positives = 137/444 (30%), Gaps = 93/444 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + +  ++ +    TG      P       +  E+   D + KEM  +
Sbjct: 53  GCMVIRPWGYGIWERMQKLLDDRIKATGHENCYFPLFIPLSYFEKEAEHVDGFAKEMAVV 112

Query: 97  ADRN----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
                               ++ ++  PT E V+   F   ++S+R+LP    Q     R
Sbjct: 113 THHRLIQKEGRLVPDPDAKLEEPLVVRPTSETVIGAAFSRWVQSWRDLPVLINQWANVVR 172

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E+R R   +R+ EFL ++             +  +                        
Sbjct: 173 WEMRTRM-FLRTAEFLWQE---GHTAHSSVDEAMEETLKMLE------------------ 210

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
            +    + E +                              I       E++    A   
Sbjct: 211 -VYRSFAEECVA--------------------------LPVIAGEKPENERFPGAVA--- 240

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                       E      + ++ G   + GT +S   +  F+ A+G+    Q  S+G+ 
Sbjct: 241 --------TYSIEAMMQDGKALQAGTSHFLGTTFSSAQNIRFQNAEGQQELAQTTSWGM- 291

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGC 377
           + R++  +I    D  G+  P  VAP++I ++ +      D    D C ++   L++   
Sbjct: 292 STRMIGGLIMVHGDDDGLRVPPRVAPYQIVVVPMLRDTDEDAAVLDYCGELVTELNRQDV 351

Query: 378 -----DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-------TGI 425
                    D    +  ++       G P+ + VG + V+   V +  R           
Sbjct: 352 FREPVRALLDRRPAKAANKRWGWVKKGAPVVIEVGGRDVAGGNVSVIRRDRLYREDGKLD 411

Query: 426 REDMSLEEVINYASHRFSNNRPVL 449
            + ++  + +  A+      +  L
Sbjct: 412 SQVVAKADFLGAATGMLEEIQQAL 435


>gi|169607863|ref|XP_001797351.1| hypothetical protein SNOG_06993 [Phaeosphaeria nodorum SN15]
 gi|111064524|gb|EAT85644.1| hypothetical protein SNOG_06993 [Phaeosphaeria nodorum SN15]
          Length = 373

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 10/180 (5%)

Query: 269 DSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRV 324
            + P+    K   A+ IEV H F+ GT+YS P+ A     DGK    VQMG +GIG  R+
Sbjct: 197 HACPKCETGKLDVAKAIEVAHTFHLGTRYSDPLGAIVSMPDGKTREAVQMGCHGIGVSRL 256

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + A+     D KG+ WP  +AP++ +++     ++      E++Y  L   G D   DD 
Sbjct: 257 IGAIASLLSDSKGLNWPRVMAPYEAAILVAPQIEEGG---AERVYDALD--GVDAVLDDR 311

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G+ +G +   ADL+G+P+ V++G  +     VE++ R   +++D+ L+E+ +  S    
Sbjct: 312 EGKSLGWKLRDADLIGYPVVVVMGRSWKEKGVVEVQCRRLDVKKDVGLDELKSEVSGLLE 371



 Score = 39.3 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 38/81 (46%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKD Y+FD  P  +  +Y  +  +Y  IF  L L  +   A+SG +GG LSHE+  ++  
Sbjct: 1   MKDLYTFDSNPSAALETYEAVRSAYTAIFDALKLPYLVADADSGNMGGKLSHEYHFVSPK 60

Query: 217 GETQVFCSKDFMDFPIPSENT 237
           GE  V+              T
Sbjct: 61  GEDNVWSCNTCTYIANEELVT 81


>gi|84496816|ref|ZP_00995670.1| glycyl-tRNA synthetase [Janibacter sp. HTCC2649]
 gi|84383584|gb|EAP99465.1| glycyl-tRNA synthetase [Janibacter sp. HTCC2649]
          Length = 471

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/445 (13%), Positives = 133/445 (29%), Gaps = 53/445 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +     R   + +    +   + WV SG   ++   +    
Sbjct: 35  WDYGPLGVELKENIRRQWWKSMVIGRDDIVGLDSSIILPRETWVASGHVGTFTDPLTECL 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR-DELRPRFGVMRSREFL 156
             + +        E +     +      +  P +     +       R ++   R    +
Sbjct: 95  SCHKR-FRVDHMQEAIADKANKRAAADAQVDPDSIQLADIACPNCGTRGQWTEAREFNMM 153

Query: 157 MKDAYSFDLTP----EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD------- 205
           +K                  +   +F+++L +      K     A++G    +       
Sbjct: 154 LKTHLGVIEDDKGLAYLRPETAQGIFINFLNVMQTSRKKPPFGIAQTGKSFRNEITPGNF 213

Query: 206 ---------LSHEFIVL--ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                    +  EF V    D    Q +  +    +       + D++       ++ + 
Sbjct: 214 IFRTREFEQMEMEFFVKPGDDVEWHQYWIDERTRWYV--DLGINPDNLRHFEHPADKLSH 271

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYV 312
               T D+     F      +     GI     F   T   +S      F    G+ +  
Sbjct: 272 YSTRTVDIEYRFNFAGSEWGELE---GIANRTDFDLKTHTEHSGTDLLFFDQTTGEKYTP 328

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK---------------AH 357
            +     G  R +   +    D        +        + +K               + 
Sbjct: 329 YVIEPAAGLSRSLMTFLV---DAYAEDEAPNTKGGVDKRVVLKLDRRLAPVKAAVLPLSR 385

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +         + A L K   +V +DD G  IG ++   D +G P  + V    + D  V 
Sbjct: 386 NADLSPKARDLAATLRKHW-NVDFDDAGA-IGKRYRRQDEIGTPFCITVDFDTLDDQAVT 443

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           I+ R T  +E ++L++V  Y + R 
Sbjct: 444 IRERDTMAQERVALDQVEGYLAQRL 468


>gi|282861791|ref|ZP_06270855.1| glycyl-tRNA synthetase [Streptomyces sp. ACTE]
 gi|282563607|gb|EFB69145.1| glycyl-tRNA synthetase [Streptomyces sp. ACTE]
          Length = 460

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/432 (13%), Positives = 129/432 (29%), Gaps = 36/432 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    + + ++WV SG   ++   +    
Sbjct: 33  WDYGPLGVELKENLKRQWWRYMVTSREDVVGLDSSVILAPEVWVASGHVATFSDPLTECT 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +        E    +       +                 E +   G++ +     
Sbjct: 93  SCHKR-YRADHLEEAYE-EKHGKAPLNGLADLNCPNCGNKGTFTEPKQFSGLLSTHLGPT 150

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--------LGLKSIPMRAESGPIGG----- 204
           +D+ S       +       F    +   +        +G            I       
Sbjct: 151 QDSGSVAYLRPETAQGIFTNFGQVQQTSRKKPPFGIAQMGKSFRNEITPGNFIFRTREFE 210

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            +  EF V     E                     +++       E+ +     T+D+  
Sbjct: 211 QMEMEFFVKPGEDEEWQEYWMQQRWNWYTGLGMREENMRWFEHPQEKLSHYSKRTADIEY 270

Query: 265 EKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F      E + V+ R           +K S    + F     + +   +     G  
Sbjct: 271 RFRFGGSEWGELEGVANRTDYDLTAH---SKASGTDLSYFDQEKSERYTPYVIEPAAGVG 327

Query: 323 RVVAAVIESSHDGKGI------IWPDSVAPFKISLINIK------AHDQVCRDACEKIYA 370
           R + A +  ++           +   +V      L  +K      + +       + + A
Sbjct: 328 RAMLAFLLDAYSEDEAPNAKGVMEKRAVMRLDPRLAPVKVAVLPLSRNPQLSPKAKGLAA 387

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R T  +E +S
Sbjct: 388 DLRQNW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRERDTMKQERVS 445

Query: 431 LEEVINYASHRF 442
           L+++  Y   R 
Sbjct: 446 LDQIQAYLGSRL 457


>gi|124507052|ref|XP_001352123.1| prolyl-t-RNA synthase, putative [Plasmodium falciparum 3D7]
 gi|23505153|emb|CAD51934.1| prolyl-t-RNA synthase, putative [Plasmodium falciparum 3D7]
          Length = 579

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 93/504 (18%), Positives = 165/504 (32%), Gaps = 96/504 (19%)

Query: 24  KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           +L+ R   I     GIY+ LPLG + ++ +   + +   +  +  MS+  LQ+  LW  S
Sbjct: 82  ELLQRANYIRDV-NGIYNILPLGFRVINKIIDFLNKHLEKLNSHAMSLSILQAKKLWNIS 140

Query: 84  GRYDSYGKEMLR-----------------LADRNDKAMIYGPTHEEVM---TDIFRSHIK 123
            R   Y  E L                       D   I  PT EE      +   +   
Sbjct: 141 DRSKLYSDEFLYVYKQKQSKNDKSSEESLKKKIEDDGYILSPTCEESSLSLINQIYNENI 200

Query: 124 SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           + + LP   +Q   KFR+E R    + +S+EFLMKD YSF    +    +Y K    Y  
Sbjct: 201 TIKCLPLLIHQYNYKFRNEKRFEKSLFKSKEFLMKDGYSFHSNEKCLNETYEKYKECYKN 260

Query: 184 IFHRLGLKSIPMRAESGP-IGGDLSHEFIVLADTGETQVFCSKDFM-DFPIPSENTDFDD 241
           IF  L L    ++      +    SHEF VL+  G+ +       + D+     +  + D
Sbjct: 261 IFEELKLSFNIIKKRKKDKMNALESHEFQVLSRDGKYKEAAHIFKLGDYYSNKLDIKYLD 320

Query: 242 II-----------------SLNSIVEQW-----------TAPYAATSDVHNEKLFDS--- 270
                               L  ++E +            AP++      N+K   S   
Sbjct: 321 KKNEKKNILMGSYGIGIYRLLYFLIENFYDEEGIKLPQQVAPFSVYLIQTNQKSKYSATK 380

Query: 271 ------LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                 + ++       I                ++TF      D  V            
Sbjct: 381 ISKILNMYKDSMEKKGNISQQKNEQDDQGDDECGNSTFVSNIHNDDKVNKDDTLNNNNDT 440

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           + +    +HD    I         ++   + ++D         ++        D+++DD 
Sbjct: 441 LNSNNTLNHDNGVNI------NNTLTYSPLTSNDIEYI-LTLWLFNTFKNKNVDIYYDDT 493

Query: 385 GEQIGSQFAVADLLGFPLQVIV-----GSK------------------------FVSDSK 415
              +  +    DL+G P ++I+       K                           +  
Sbjct: 494 DLHLSRKLKHCDLIGAPNRIIINLSNLDKKVKVPTNFYNYIDNSDNILLNKLYLTFQNIT 553

Query: 416 VEIKHRLTGIREDMSLEEVINYAS 439
           +E KHR +  ++ M++ E+  Y  
Sbjct: 554 IEYKHRFSQEKKIMTIRELFKYFK 577


>gi|27468170|ref|NP_764807.1| glycyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57867007|ref|YP_188708.1| glycyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|293366474|ref|ZP_06613151.1| glycine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|38258360|sp|Q8CSD5|SYG_STAES RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|71153561|sp|Q5HNY2|SYG_STAEQ RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|27315716|gb|AAO04851.1|AE016748_85 glycyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57637665|gb|AAW54453.1| glycyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|291319243|gb|EFE59612.1| glycine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329735209|gb|EGG71501.1| glycine--tRNA ligase [Staphylococcus epidermidis VCU045]
 gi|329737405|gb|EGG73659.1| glycine--tRNA ligase [Staphylococcus epidermidis VCU028]
          Length = 463

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/445 (12%), Positives = 134/445 (30%), Gaps = 55/445 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN-----RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +N+     ++         G   +    L +   W  SG   ++   M+
Sbjct: 32  WDYGPLGVELKNNIKKAWWQKFITQSPYNVG---IDAAILMNPKTWEASGHLGNFNDPMI 88

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHI-----KSYRNLPFTFYQIQLKFRDELRPRFGV 149
              D +          E+ M +            S+  +        +         +  
Sbjct: 89  DNKD-SKIRYRADKLIEDYMQNEKGDENFIADGLSFDEMKKIIDDEGIVCPVSKTANWTD 147

Query: 150 MRSREFLMKDAYSFDLTPEG----SKHSYNKMFVSYLRIFH-----------------RL 188
           +R    + K                  +   +FV+Y  +                   R 
Sbjct: 148 IRQFNLMFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRN 207

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +        +          F    +  E Q +      ++    +    +D + L   
Sbjct: 208 EITPGNFIFRTREFEQMELEFFCKPGEEIEWQNYWKTFASEWLT--DLNISEDNMRLRDH 265

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   + Y+  +     K      E   +++R           +++S            +
Sbjct: 266 DEDELSHYSNATTDIEYKFPFGWGELWGIASRTDYDLRQH---SEHSGEDFKYHDPETNE 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHD----------GKGIIWPDSVAPFKISLINIKAHD 358
            +        +GA RV  A +  ++              + +  ++AP+K +++ +    
Sbjct: 323 KYIPYCIEPSLGADRVTLAFLCDAYAEEGVEGSKDARTVMHFHPALAPYKAAVLPLSKK- 381

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   KI+ +LS     + +D+  + IG ++   D +G P  +      + D++V +
Sbjct: 382 --LSSEAIKIFEQLSSS-FAIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTV 437

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R +  +  M + E+  + + +  
Sbjct: 438 RDRDSMEQVRMPISELETFLAEKVK 462


>gi|291167027|gb|EFE29073.1| glycine--tRNA ligase [Filifactor alocis ATCC 35896]
          Length = 463

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/443 (14%), Positives = 138/443 (31%), Gaps = 53/443 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   WV SG    +   ++   
Sbjct: 34  WDYGPLGVELKNNVKKAWWKKFVQESPYNVGLDAAILMNPQTWVASGHVGGFSDPLIDCK 93

Query: 98  --------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
                   D+  +  I     EE+  D + +               +     E       
Sbjct: 94  KCKSRFRADKIIEDFIKENKGEEINVDGWDNEKLEGFIQENHMVCPE---CGEFDYTGIR 150

Query: 150 MRSREFLMKDAYSFDLTPEGSK--HSYNKMFVSYLRIFHRLGLKSIPMRAE--------- 198
             +  F      + D T E      +   +FV++  +      K     A+         
Sbjct: 151 KFNLMFKTFQGVTEDSTAEIFLRPETAQGIFVNFKNVQRTSRKKVPFGIAQIGKSFRNEI 210

Query: 199 -----SGPIGGDLSHEFIVLADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                +         E       GE   +    K++    + S     D++   +   E+
Sbjct: 211 TPGNFTFRTREFEQMELEFFCAPGEDLKWFEYWKEYCKNFLLSLGIQVDNLRLRDHAPEE 270

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGAD-GKD 309
            +    AT+D    K      E   ++ R       F          +   ++     + 
Sbjct: 271 LSHYSNATTDF-EYKFPFGWGELWGIADR-----TDFDLKQHMEHSGVDMKYQDPTTNEK 324

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQV 360
           +        +GA RV  A +  ++D            + +  ++APFK +++ +      
Sbjct: 325 YIPYCIEPSLGADRVTLAFLIDAYDEEELEDGTVRNVLRFHPALAPFKAAVLPLTKK--- 381

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   +++  L     +V +D+ G  IG ++   D  G P  +      + D  V ++ 
Sbjct: 382 LSEPATELFQDL-AKYFNVDYDETG-SIGKRYRRHDEAGTPFCITFDFDSLEDKCVTVRD 439

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +  M + E+ +Y      
Sbjct: 440 RDTMEQVRMPIAELKSYIEESLQ 462


>gi|241889715|ref|ZP_04777013.1| glycyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
 gi|241863337|gb|EER67721.1| glycyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
          Length = 457

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/440 (12%), Positives = 142/440 (32%), Gaps = 47/440 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +      +   W  SG   ++   M+   
Sbjct: 28  WDYGPLGIELKNNVKKAWWKKFIQESPYNVGLDAAIFMNPRTWEASGHVGNFSDPMMDCK 87

Query: 98  --------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF--RDELRPRF 147
                   D+  +   +   +E+V+ D                   +        +R   
Sbjct: 88  VCKSRLRADKLIEEYYFNEKNEDVVVDGLPFEELEAIIDRENIKCPECGSHDYTNIRQFN 147

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAES 199
            + ++ + +++++ S       +       F +  R   +         G          
Sbjct: 148 LMFKTNQGVVENSTSQIYLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPG 207

Query: 200 GPIGGDLSHEFIV---LADTG-ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
             I      E +      + G E     +          +     + I L    ++  + 
Sbjct: 208 NFIFRTREFEQMELEFFCEPGTELDWHTTWKNNCEKFLLDLGMTKENIRLRDHDKEELSH 267

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKG-ADGKDHYV 312
           Y+  +     K      E   +++R       H+ + G         T++  +  +    
Sbjct: 268 YSNATTDIEFKFPFGWGELWGIASRTDYDLKQHMEHSGQD------LTYQDLSTNEKFIP 321

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRD 363
                 +G  RV+ A +  +++ + +          +  ++AP+K +++ +        D
Sbjct: 322 YCIEPSVGVDRVLLAFLCDAYNEEEVGENDTRTVLKFHPALAPYKAAILPLSKK---LSD 378

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++Y +L  V   V +D+ G  IG ++   D +G P  +    +  +D  V ++ R T
Sbjct: 379 KAVEVYQQL-AVDFMVDFDETG-SIGKRYRRQDEVGTPFCITYDFESENDGMVTVRDRDT 436

Query: 424 GIREDMSLEEVINYASHRFS 443
             +  + + E+  Y   +  
Sbjct: 437 MEQTRIPITELKQYIEEKIK 456


>gi|70726352|ref|YP_253266.1| glycyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|123762313|sp|Q4L6R5|SYG_STAHJ RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|68447076|dbj|BAE04660.1| glycyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
          Length = 463

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/452 (14%), Positives = 146/452 (32%), Gaps = 69/452 (15%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN-----RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +NV     ++         G   +    L +   W  SG   ++   M+
Sbjct: 32  WDYGPLGVELKNNVKKAWWQKFITQSPFNVG---IDAAILMNPKTWEASGHLGNFNDPMI 88

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS-- 152
              D +          E+ M             L F   +  +     + P  G      
Sbjct: 89  DNKD-SKIRYRADKLIEDYMQKEKGDENFIADGLSFDEMKRIIDDEGIVCPVSGTANWTD 147

Query: 153 -REFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFH-----------RLGLKSIP 194
            R+F +       +T + +   +        +FV+Y  +             ++G     
Sbjct: 148 IRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRN 207

Query: 195 MRAESGPIGGDLSHEFI---VLADTGE-------TQVFCSKDFMDFPIPSENTDFDDIIS 244
                  I      E +        GE        + F S+   D  I  EN    D   
Sbjct: 208 EITPGNFIFRTREFEQMELEFFCKPGEEIEWQNYWKTFASQWLKDLNINEENMRLRD--- 264

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATF 302
                E+  + Y+  +     +      E   +++R       F    K+S        +
Sbjct: 265 ---HDEEELSHYSNATTDIEYRFPFGWGELWGIASR-----TDFDL-KKHSEHSGEDFKY 315

Query: 303 KG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHD----------GKGIIWPDSVAPFKISL 351
                 + +        +GA RV  A +  +++             + +  ++AP+K ++
Sbjct: 316 HDPETNEKYVPYCIEPSLGADRVTLAFLCDAYEEEGVEGSKDARTVMHFHPALAPYKAAV 375

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +        +   KI+ +LS     + +D+  + IG ++   D +G P  +      +
Sbjct: 376 LPLSKK---LSEEAIKIFEQLSSK-FAIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSL 430

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            D++V ++ R +  +  M + E+  + + + +
Sbjct: 431 EDNQVTVRDRDSMEQVRMPISELETFLAEKVA 462


>gi|314933737|ref|ZP_07841102.1| glycine--tRNA ligase [Staphylococcus caprae C87]
 gi|313653887|gb|EFS17644.1| glycine--tRNA ligase [Staphylococcus caprae C87]
          Length = 463

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/448 (14%), Positives = 147/448 (32%), Gaps = 61/448 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN-----RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +N+     ++         G   +    L +   W  SG   ++   M+
Sbjct: 32  WDYGPLGVELKNNIKKAWWQKFITQSPYNVG---IDAAILMNPKTWEASGHLGNFNDPMI 88

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS-- 152
              D +          E+ M             L F   +  +     + P  G      
Sbjct: 89  DNKD-SKIRYRADKLIEDYMQKEKGDENFIADGLSFDEMKQIIDDEGIVCPVSGTANWTD 147

Query: 153 -REFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFH-----------------RL 188
            R+F +       +T + +   +        +FV+Y  +                   R 
Sbjct: 148 IRQFNLMFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRN 207

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +        +          F    +  E Q F  K F    +   N + +++   +  
Sbjct: 208 EITPGNFIFRTREFEQMELEFFCKPGEEIEWQNF-WKTFASQWLKDLNINEENMRLRDHD 266

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKG-A 305
            ++ +    AT+D+   K      E   +++R       F    K+S        +    
Sbjct: 267 ADELSHYSNATTDI-EYKFPFGWGELWGIASR-----TDFDL-QKHSEHSGEDFKYHDPE 319

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHD----------GKGIIWPDSVAPFKISLINIK 355
             + +        +GA RV  A +  +++             + +  ++AP+K +++ + 
Sbjct: 320 TNEKYVPYCIEPSLGADRVTLAFLCDAYEEEGVEGSKDARTVMHFHPALAPYKAAVLPLS 379

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                      KI+ +LS+    + +D+  + IG ++   D +G P  +      + D++
Sbjct: 380 KK---LSSEAIKIFEQLSQS-FSIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQ 434

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           V ++ R +  +  M + E+  + + +  
Sbjct: 435 VTVRDRDSMEQVRMPISELETFFAEKVK 462


>gi|327400952|ref|YP_004341791.1| ATP phosphoribosyltransferase regulatory subunit [Archaeoglobus
           veneficus SNP6]
 gi|327316460|gb|AEA47076.1| ATP phosphoribosyltransferase regulatory subunit [Archaeoglobus
           veneficus SNP6]
          Length = 416

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 135/415 (32%), Gaps = 21/415 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   +LP   +    + A++R      G  E++ PT +  +L+  +SG  +   +E+   
Sbjct: 8   GTRDFLPDEMEKRRAIEAVMRRIAESYGYREIATPTFEHLELFTIKSG--EGIVEELYAF 65

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF- 155
            D+  + +   P     +  +F +   S    P  FY     FR E   +       +F 
Sbjct: 66  KDKGGRDLALRPELTAPVMRLFVNEC-SVMPRPLRFYYFANCFRYERPQKGRYREFWQFG 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           +     S  L+         ++       F         +R     I  D + + + L D
Sbjct: 125 VELIGSSSHLSDAEVIALAYRIMDELNLDFELHIGHVGLLRHLLKDIEEDRASKIMRLID 184

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV---HNEKLFDSLP 272
             + +   S                 +I L    +          D    H EKL D L 
Sbjct: 185 KKDVEGLSSYLREINAPEELAEKIYALIELTGSRDVLVEASRLIPDFDMSHMEKLCDVLD 244

Query: 273 ENK------RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                       ARG++      F       + A  +   G  + +     G        
Sbjct: 245 SMNVNYVIDLGIARGLDYYTGVVFEAYAKHGLGAQKQICGGGSYRLTHLFGGEDVPSTGF 304

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A+          I P         ++N+    +       +I   L K G  V  D M  
Sbjct: 305 ALGFDRIAEICEITPPQKPVIV--VVNVGFEGE-----AFRIAEELRKQGFRVVTDVMER 357

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            I  QF+ A+ +     V+VG + +   +  +K+ +TG   ++S EE++ + S  
Sbjct: 358 NIRKQFSYANDINASFAVVVGKREIESGRYTLKNMVTGEHYELSFEELVKHLSRE 412


>gi|145223306|ref|YP_001133984.1| glycyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
 gi|315443766|ref|YP_004076645.1| glycyl-tRNA synthetase [Mycobacterium sp. Spyr1]
 gi|145215792|gb|ABP45196.1| glycyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
 gi|315262069|gb|ADT98810.1| glycyl-tRNA synthetase [Mycobacterium sp. Spyr1]
          Length = 467

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/438 (14%), Positives = 131/438 (29%), Gaps = 40/438 (9%)

Query: 40  YSWLPLGQKALDNVN-AIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+     R     R   + +    +    +WV SG  + +     E L
Sbjct: 34  WDYGPLGVELKENIKKQWWRSVITSRDDVVGLDSAIILPRQVWVASGHVEVFNDPLVECL 93

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSR 153
               R+ +  +     E+       S                 K +  E R    ++++ 
Sbjct: 94  NCHKRHRQDHMQEAFFEKGGEKKGFSSPDEVPMGEIVCPDCGTKGQWTEPRDFNMMLKTY 153

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGD 205
              ++           +       F + +    +         G            I   
Sbjct: 154 LGPIESEEGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQIGKSFRNEITPGNFIFRT 213

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIP-----SENTDFDDIISLNSIVEQWTAPYAATS 260
              E + +    E                        + D++       E+ +     T+
Sbjct: 214 REFEQMEMEFFVEPSTAAEWHKYWIETRLQWYVDLGIERDNLRLYEHPKEKLSHYSDGTT 273

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYG 318
           D+  +  F   P  +     GI     F   T  ++S    + +  A    +   +    
Sbjct: 274 DIEYKFGFAGNPWGELE---GIANRTNFDLSTHSQHSGVDLSFYDQAADTRYVPYVIEPA 330

Query: 319 IGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDAC 365
            G  R + A +  ++                       +AP K +++ +  H        
Sbjct: 331 AGLTRSLMAFLVDAYTEDEAPNAKGGVDKRTVLRLDPRLAPVKAAVLPLSRH-ADLSPKA 389

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
             + A L +   +V +DD G  IG ++   D +G P  + V    + D  V I+ R    
Sbjct: 390 RDLAAELRQSW-NVEFDDAGA-IGRRYRRQDEIGTPYCITVDFDSLEDHAVTIRERDAMS 447

Query: 426 REDMSLEEVINYASHRFS 443
           +E +++ EV NY + R  
Sbjct: 448 QERIAISEVSNYLAVRLK 465


>gi|315652484|ref|ZP_07905469.1| glycyl-tRNA synthetase beta subunit [Eubacterium saburreum DSM
           3986]
 gi|315485273|gb|EFU75670.1| glycyl-tRNA synthetase beta subunit [Eubacterium saburreum DSM
           3986]
          Length = 462

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/442 (14%), Positives = 138/442 (31%), Gaps = 50/442 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV A   ++  +     +      L +   W+ SG   S+   ++   
Sbjct: 32  WDYGNLGVELKNNVKAAWWQKFIKESPYNVGVDCAILMNPQTWIASGHLGSFSDPLMDCK 91

Query: 98  DRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           + +++     +I     E  +T        S   +     +  +        +      R
Sbjct: 92  ECHERFRADKIIEDYMQENGITIEGSVDAWSNDEMKNYIDEHDIACP--TCGKHNFTDIR 149

Query: 154 EFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGL 190
           +F +       +T +     Y +          F +  R                 R  +
Sbjct: 150 QFNLMFKTFQGVTEDAKNVVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQVGKSFRNEI 209

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                   +          F       E   +      D+         ++ + L    +
Sbjct: 210 TPGNFTFRTREFEQMELEFFCKPGSDLEWFDYWRSFCRDWL--KALGIKEEQMRLRDHDK 267

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           +  + Y+  +            E   ++ R     +      + S    + F     + +
Sbjct: 268 EELSFYSNATTDIEFLFPFGWGELWGIADRTDYDLNRHQ---EVSGQDLSYFDDETSERY 324

Query: 311 YVQMGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVC 361
              +    +GA RV  A + +++D            + +  ++AP KI ++ +       
Sbjct: 325 IPYVIEPSLGADRVTLAFLCAAYDEEILEGGETRTVLHFHPALAPVKIGILPLSKK---L 381

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   KI   LSK   +V +DD G  IG ++   D +G P  +       SD  V ++ R
Sbjct: 382 NEGALKISEELSKY-YNVEFDDRG-NIGKRYRRQDEIGTPFCITYDFDSESDHAVTVRDR 439

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            +  +  + + E+ NY   +F 
Sbjct: 440 DSMEQVRIPIAELKNYFEDKFR 461


>gi|296166319|ref|ZP_06848756.1| glycyl-tRNA synthetase beta subunit [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295898328|gb|EFG77897.1| glycyl-tRNA synthetase beta subunit [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 496

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/435 (13%), Positives = 129/435 (29%), Gaps = 38/435 (8%)

Query: 40  YSWLPLGQKALDNVNA-IIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     R     R   + +    +    +WV SG  + +   ++   
Sbjct: 67  WDYGPLGVELKENIKRQWWRSVVTGRDDVVGIDSSIILPRQVWVASGHVEVFHDPLVECL 126

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
           + + +        E         H  S             K +  E R    ++++    
Sbjct: 127 NCHHRHRQ-DHMQEAYAAKKGIDHPDSVPMTEIVCPDCGTKGQWTEPREFNMMLKTYLGP 185

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG---- 204
           ++           +       F + +    +         G            I      
Sbjct: 186 IETEEGLHYLRPETAQGIFVNFANIVTTARKKPPFGIGQIGKSFRNEITPGNFIFRTREF 245

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V   T +       D           + +++       E+ +     T D+ 
Sbjct: 246 EQMEMEFFVEPSTAKEWHQYWIDTRHQWYVDLGINPENLRLFEHPAEKLSHYSDRTVDIE 305

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  F   P  +     G+     F   T  K+S    + +       +   +     G 
Sbjct: 306 YKFGFAGNPWGELE---GVANRTDFDLSTHAKHSGADLSYYDQVTDTRYTPYVIEPAAGL 362

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R   A +  ++                       +AP K +++ +  H          +
Sbjct: 363 TRSFMAFLIDAYTEDQAPNAKGVMEKRTLLRLDPRLAPVKAAVLPLSRH-ADLSPKARDL 421

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A L     ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R    +E 
Sbjct: 422 AAELRTCW-NIDFDDAGA-IGRRYRRQDEVGTPFCVTVDFDSLEDNAVTVRRRDDMTQER 479

Query: 429 MSLEEVINYASHRFS 443
           +++  V +Y + R  
Sbjct: 480 VAMNAVGDYLAARLK 494


>gi|163848039|ref|YP_001636083.1| glycyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222525927|ref|YP_002570398.1| glycyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
 gi|163669328|gb|ABY35694.1| glycyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222449806|gb|ACM54072.1| glycyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
          Length = 539

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 79/527 (14%), Positives = 152/527 (28%), Gaps = 114/527 (21%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVN-AIIR-EEQNRTGAIEMSVPTLQSADL 79
           R G I   S      +G+Y + PLG +  +N+     R     R     +    L +  +
Sbjct: 15  RRGFIFPSSEIYGGLQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLV 74

Query: 80  WVESGRYDSYGKEMLRLADRNDKA------------------------------------ 103
           W  SG  +++   ++   +   +                                     
Sbjct: 75  WKYSGHEETFNDPLVDCRNCKMRWRADHIQGVCPNCGSRDLTEPRPFNMMFRTQIGPVAD 134

Query: 104 -----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
                 +   T + +  +       S R LPF   Q+   FR+E+ PR  + R REF   
Sbjct: 135 SGSFAYLRPETAQGIFVNFANVLTTSARKLPFGIAQVGKAFRNEINPRNFLFRVREFEQM 194

Query: 159 DAYSFDL---TPEGSKHSYNKMFVSYLRI--FHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +   F +     E  +         + +I              AE               
Sbjct: 195 EIEYFVMPGTDEEWHQRWLEARLAWWEQIGIPRSRITIYDVPTAELAHYSKRTFDLMYEY 254

Query: 214 ADTGETQVFCSKDFMDFPIPSE---------------------NTDFDDIISLNSIVEQW 252
            + G  ++    +  D+ + S                         + D  S   +V   
Sbjct: 255 PNIGVQEIEGIANRTDYDLGSHSKDQAQLNLTARVNHNEDSIARLTYFDQASGRHVVPYV 314

Query: 253 TAP--------YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             P         A   + + E+L  ++P  K  +    E  + F      S  +S   + 
Sbjct: 315 IEPSAGVGRCMLAVMCEGYAEELTKAIPGEKLAAVG--EALNAFLKSVGRSEKLSGEARD 372

Query: 305 -----------------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW---PDSV 344
                             + +      G+  I   + +    +   D            +
Sbjct: 373 AILARGEELTQALAERLPEVEQLLAMPGADQIELGKKLRGQAQPLIDEHYRTVLRLKPRL 432

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           AP K+++  +K + +      + +  +L   G     +DD G  IG  +   D +G P  
Sbjct: 433 APIKVAVFPLKRNHEEIVATAKAVRRQLQAGGRMRTIYDDTGA-IGKLYRRQDEIGTPFC 491

Query: 404 VIVGSKFVS-------DSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + V    +           V ++ R T  +E + + E+  Y   R S
Sbjct: 492 ITVDFDTIGQGKDPALAGTVTVRDRDTMAQERVPIAELEAYLRDRVS 538


>gi|303238626|ref|ZP_07325159.1| glycyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302593745|gb|EFL63460.1| glycyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 462

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 66/443 (14%), Positives = 139/443 (31%), Gaps = 54/443 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + + PLG +  +NV      +       E      +    L +  +WV SG    +   +
Sbjct: 34  WDYGPLGVELKNNVKKAWWRKF----VQESPYNVGVDCAILMNPQVWVASGHVGGFSDPL 89

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           +   D   +        +    +     I  + N     Y  +   +            R
Sbjct: 90  IDCKDCKTRHRADKMIEDWNAENNLDVRIDGWTNDQLIEYVKEKGVKCPNCGSANFTDIR 149

Query: 154 EFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP--- 201
           +F +       +T +     + +          F +  R   +     I    +S     
Sbjct: 150 KFNLMFKTFQGVTEDSKAEIFLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEI 209

Query: 202 ----------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                         +  EF              K++    + +   + D +   +   E+
Sbjct: 210 TPGNFTFRTREFEQMELEFFCEPGKDLEWFDYWKNYCFNWLLNLGINQDSLKMRDHEKEE 269

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKD 309
            +    AT+D+   K      E   ++ R       F       +S    + F     + 
Sbjct: 270 LSHYSNATTDI-EFKFPFGWGELWGIADR-----TDFDLKQHMTHSKDDLSYFDPTTNEK 323

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQV 360
           +        +GA RV  A +  ++D + +          +  ++AP KI+++ +      
Sbjct: 324 YVPYCIEPSLGADRVTLAFLCDAYDEEEVAEGDVRVVLHFHPAIAPVKIAILPLSKK--- 380

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D   K+Y  L+K      +D+ G  IG ++   D +G P  +      + D  V I+ 
Sbjct: 381 LGDDAYKVYEALTKKYV-CEYDETG-SIGKRYRRQDEIGTPYCITFDFDSLEDKSVTIRD 438

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R    +  + +E++ NY   +F 
Sbjct: 439 RDNMQQVRVKIEDLDNYFEGKFE 461


>gi|293400671|ref|ZP_06644816.1| glycine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305697|gb|EFE46941.1| glycine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 460

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/439 (11%), Positives = 123/439 (28%), Gaps = 48/439 (10%)

Query: 40  YSWLPLGQKALDNVNA-IIREEQNRTGA-IEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     R     +   + +    L +  +WV SG    +   ++   
Sbjct: 34  WDFGPLGVELKENIKKAWWRRFIQESPYNVGIQSAILMNPSVWVASGHVGGFSDPLMDCK 93

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +   +        E    ++      +   + +         +        + +      
Sbjct: 94  ECKSRFRADQLIEEATNGEVSVEGWSNEAMMEYINEHHIACPKCGKHNFTDIRQFNLMFK 153

Query: 158 KDAYSFDLTPEGSK------HSYNKMFVSYLRIFH--------------RLGLKSIPMRA 197
                 + +                 F +  R                 R  +       
Sbjct: 154 TFQGILEDSKNTIYLRPETAQGMFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGNFIF 213

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY- 256
            +          F       E   +     M F    +     + +       +  A Y 
Sbjct: 214 RTREFEQMELEFFCQPGTDLEWYEYYKNYCMKFLT--DLGVDPEHLRFRDHTPEELAFYS 271

Query: 257 -AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQM 314
                  +N        E   ++ R           +K S      +      + +    
Sbjct: 272 KGTCDIEYNFHSQIGWGELWGIADRTDYDLKQHQEASKKS----LEYLDPTTNEKYLPYC 327

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               +G  R++ A +  ++D       + +      ++++       +     +  +LS+
Sbjct: 328 VEPAVGVERLMLAFLCDAYDE------EELENDTRIVMHLHPFLAPIKACITPLSKKLSE 381

Query: 375 VGCDV----------FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            G +V           +DD G  IG ++   D +G P  + V  +   D+ V ++ R T 
Sbjct: 382 KGMEVFQMLAPVANCDYDDAG-SIGKRYRRNDAIGTPFCITVDFETEQDNCVTVRERDTM 440

Query: 425 IREDMSLEEVINYASHRFS 443
            +E ++L ++++Y   R  
Sbjct: 441 KQERVNLNDLVSYIEERIK 459


>gi|297529263|ref|YP_003670538.1| histidyl-tRNA synthetase [Geobacillus sp. C56-T3]
 gi|297252515|gb|ADI25961.1| histidyl-tRNA synthetase [Geobacillus sp. C56-T3]
          Length = 426

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/406 (15%), Positives = 124/406 (30%), Gaps = 12/406 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I R   +R G  E+  P  +  +L++       D   KEM    D+  +A+   
Sbjct: 20  WQYVEHIARSLCSRYGYQEIRTPIFEHTELFLRGVGDTTDIVQKEMYTFEDKGGRALTLR 79

Query: 108 PTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   F  H      N P   Y     FR E        +  +F ++   S D  
Sbjct: 80  PEGTAPVVRAFVEHKLYGSPNQPLKLYYSGPMFRYERPEAGRFRQFVQFGVEALGSSDPA 139

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +    +        L +     + +     +S     +        +   E    C   
Sbjct: 140 IDAEVMALAMHIYEALGLKRIRLVINSLGDLDSRRAHREALVR-HFSSRIHELCPDCQTR 198

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENKRVS 278
               P+   +   D    L +            S  + EK+   L         +++ V 
Sbjct: 199 LHTNPLRILDCKKDRDHELMATAPSILDYLNEDSRAYFEKVKQYLTNLGIPFVIDSRLVR 258

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                    F   ++     +A      G+ + +     G     +  A+          
Sbjct: 259 GLDYYNHTTFEIMSEAEGFGAAATLCGGGRYNGLVQEIGGPETPGIGFALSIERLLAALD 318

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +         + A  +  +D   ++   L + G  V  D +G ++ +Q   AD L
Sbjct: 319 AEGVELPVESGLDCYVVAVGERAKDEAVRLVYALRRFGLRVDQDYLGRKLKAQLKAADRL 378

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G     I+G + +   +  +KH  +G + ++ L E+ ++   R   
Sbjct: 379 GASFVAIIGDEELERQEAAVKHMASGEQTNVPLGELAHFLHERIGK 424


>gi|56421108|ref|YP_148426.1| histidyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|81675744|sp|Q5KWS8|SYH_GEOKA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|56380950|dbj|BAD76858.1| histidyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
          Length = 426

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/406 (15%), Positives = 122/406 (30%), Gaps = 12/406 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I R   +R G  E+  P  +  +L++       D   KEM    D+  +A+   
Sbjct: 20  WQYVEHIARSLCSRYGYQEIRTPIFEHTELFLRGVGDTTDIVQKEMYTFEDKGGRALTLR 79

Query: 108 PTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   F  H      N P   Y     FR E        +  +F ++   S D  
Sbjct: 80  PEGTAPVVRAFVEHKLYGSPNQPLKLYYSGPMFRYERPEAGRFRQFVQFGVEALGSSDPA 139

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +    +        L +     + +     +S     +            E    C   
Sbjct: 140 IDAEVMALAMHIYEALGLKRIRLVINSLGDLDSRRAHREALVR-HFSNRIHELCPDCQTR 198

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENKRVS 278
               P+   +   D    L +            S  + EK+   L         + + V 
Sbjct: 199 LHTNPLRILDCKKDRDHELMATAPSILDYLNDESRAYFEKVKQYLTALGIPFVIDARLVR 258

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                    F   ++     +A      G+ + +     G     +  A+          
Sbjct: 259 GLDYYNHTTFEIMSEAEGFGAAATLCGGGRYNGLVQEIGGPETPGIGFALSIERLLAALD 318

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +         + A  +  +D   ++   L + G  V  D +G ++ +Q   AD L
Sbjct: 319 AEGVELPVESGLDCYVVAVGERAKDEAVRLVYALRRSGLRVDQDYLGRKLKAQLKAADRL 378

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G     I+G + +   +  +KH  +G + ++ L E+ ++   R   
Sbjct: 379 GASFVAIIGDEELERQEAAVKHMASGEQTNVPLGELAHFLHERIGK 424


>gi|54023426|ref|YP_117668.1| glycyl-tRNA synthetase [Nocardia farcinica IFM 10152]
 gi|59798496|sp|Q5YZT7|SYG_NOCFA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|54014934|dbj|BAD56304.1| putative glycyl-tRNA synthetase [Nocardia farcinica IFM 10152]
          Length = 466

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 61/434 (14%), Positives = 133/434 (30%), Gaps = 40/434 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           + + PLG +  +N+          +R   + +    +    +W  SG   ++   ++   
Sbjct: 39  WDYGPLGVELKENIKRQWWRSMVTSREDVVGLDSSVILPRQVWEASGHVATFTDPLVESL 98

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           +  +  +A      +EE       + +   R+              E R   G++++   
Sbjct: 99  ITHKRYRADHLLEAYEEKHGHPPANGLADIRDPETGEPGRWT----EPRNFSGLLKTFLG 154

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG--- 204
            + D          +       + +      +         G            I     
Sbjct: 155 PVDDEEGLHYLRPETAQGIFINYKNVETTARKKPPFGIAQIGKSFRNEITPGNFIFRTRE 214

Query: 205 --DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
              +  EF V     E       D           D +++       E+ +     T D+
Sbjct: 215 FEQMEMEFFVKPGEDEQWHQYWIDTRLAWYTDLGIDPENLRLYEHPKEKLSHYSTRTVDI 274

Query: 263 HNEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                F      E + V+ R           +++S    + F  A+ + +   +     G
Sbjct: 275 EYRFRFQGSEWGELEGVANRTDYDLKTH---SEHSGTELSYFDQANNERYIPYVIEPAAG 331

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFK------ISLINIKA------HDQVCRDACEKI 368
             R + A +  ++              +        L  +KA       +       + +
Sbjct: 332 LTRSLMAFLVDAYAEDEAPNAKGGVDVRTVLRLDRRLAPVKAAVLPLSRNADLTPKAKDL 391

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A+L K   +V +DD G  IG ++   D +G P  + V    + D  V I+ R +  +E 
Sbjct: 392 AAQLRKHW-NVEFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLEDQAVTIRERDSMAQER 449

Query: 429 MSLEEVINYASHRF 442
           ++L++V  Y +   
Sbjct: 450 IALDKVEGYLAQHL 463


>gi|58337235|ref|YP_193820.1| histidyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227903819|ref|ZP_04021624.1| histidyl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
 gi|75507609|sp|Q5FKI5|SYH_LACAC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|58254552|gb|AAV42789.1| histidyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227868706|gb|EEJ76127.1| histidyl-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
          Length = 428

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 68/412 (16%), Positives = 128/412 (31%), Gaps = 18/412 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    +   V    R   NR    E+  P+ ++ +++  S     +   K+M  
Sbjct: 8   GTVDILPDQSSSWQKVEETARNFFNRANYREIRTPSFENYEIFSRSSGDSSEIVEKQMYD 67

Query: 96  LADRNDKAMIYGPTHEEV--MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P          +           PF  + ++  FR E        R R
Sbjct: 68  FNDKGGRHIALRPEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF  +   +      M           +Y    + LG + +        +  
Sbjct: 125 EFHQIGVESFGSSNPLADVQTIMMGHDLLAELGVKNYQLHINTLGNEQVRKDYHDALVNY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               +  +  D+           +D     +     D   +   ++  T     +     
Sbjct: 185 FTPVKDELSEDSQRRLRDNPLRILDSKDERDKKFLPDAPKIREFLDDDTKNNFESILKML 244

Query: 265 EKL-FDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           ++L  D + ++  V       G IF F     SL  SAT     G+  ++     G    
Sbjct: 245 DQLGIDYVIDDDLVRGLDYYTGVIFEFMVEDKSLWESATTILGGGRYDHLVEEFNGPATP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E            ++         I    +       +I   L K G +  +D
Sbjct: 305 AVGFGIGEERLMLVLEKQNPALFESNSIDFFIANIGEGTAQKAIEITRSLRKQGFEADFD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +++ +QF  AD       + +G K + +  + IK    G   D+SLE++
Sbjct: 365 VNQKKLKAQFKKADRDHAKYVITLGEKELENGVLNIKRLSDGKTIDLSLEDI 416


>gi|311031528|ref|ZP_07709618.1| histidyl-tRNA synthetase [Bacillus sp. m3-13]
          Length = 426

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/410 (14%), Positives = 115/410 (28%), Gaps = 16/410 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              + A  +E        E+  P  +S +L++       D   KEM    DR  +++   
Sbjct: 20  WQYIEAKAKEICELYNYKEIRTPIFESTELFLRGVGDTTDVVQKEMYTFEDRGGRSLTLR 79

Query: 108 PTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   +  + +      P   Y I   FR E        +  +F ++   S    
Sbjct: 80  PEGTAAVARSYVNNKMFGSPTQPTKLYYIGQMFRYERPQAGRFRQFVQFGIEALGSN--D 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCS 224
           P             Y  +        I    +  S     D            E    C 
Sbjct: 138 PSIDAEVIALAVELYKSLGLNNLKVVINSLGDKESRQAHRDALI-NHFQPRINEFCGDCQ 196

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENKR 276
                 P+   +   D    L +            S  + +K+   L         +   
Sbjct: 197 GRLEKNPLRILDCKKDRDHELMATAPSILDYLNEESKAYFDKVVAYLSALGIQYEIDPNL 256

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V          F   +      + T     G+ + +     G     +  A+        
Sbjct: 257 VRGLDYYYHTAFEIMSTSEGFGAITTLCGGGRYNGLVQEIGGPETPGIGFALSIERLISA 316

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                            + A     ++   K+   L K G     D   +++ +QF  AD
Sbjct: 317 MEAENVKFPFEDSIDCYVVALGDKAKETAVKLLFDLRKAGIVAEKDYQDKKMKAQFKAAD 376

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            L     ++ G   +    V IK   TG +++++ E+ + + + + S  R
Sbjct: 377 RLQAKYTIVFGDDELEKGVVSIKEMETGEQQEVAFEDAVAFITAKKSGER 426


>gi|116626061|ref|YP_828217.1| anticodon-binding domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229223|gb|ABJ87932.1| Anticodon-binding domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 480

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 1/128 (0%)

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            +  G Y +   R++   IE+ +D  G+  P  VAPF + +    A D    +A E+IYA
Sbjct: 350 RMTAGLYRLALDRILTTAIEAGNDKDGMALPAGVAPFDVVVSVAVAGDAAQMEAAERIYA 409

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             +  G D+ +DD  E+ G +F  ADL+G P +V VG K ++   VE+  R T +   + 
Sbjct: 410 ECTAAGMDLLFDDRDERPGVKFKDADLIGVPWRVTVGKK-IAGGLVELVERKTKVVTAVP 468

Query: 431 LEEVINYA 438
           +  V+   
Sbjct: 469 IASVMEAI 476



 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 42/69 (60%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          MR S+ F+P L+ENP DAE  S +L++R G       G+Y WLPLGQ+A+  +  I R+E
Sbjct: 7  MRWSRLFIPTLRENPADAETVSQQLLVRAGYARAVKTGVYGWLPLGQRAMAKIQRIARQE 66

Query: 61 QNRTGAIEM 69
              G  E+
Sbjct: 67 LTALGGQEV 75


>gi|15896443|ref|NP_349792.1| glycyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|59798597|sp|Q97EB8|SYG_CLOAB RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|15026266|gb|AAK81132.1|AE007815_2 Glycyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|325510601|gb|ADZ22237.1| glycyl-tRNA synthetase [Clostridium acetobutylicum EA 2018]
          Length = 462

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/449 (13%), Positives = 137/449 (30%), Gaps = 62/449 (13%)

Query: 27  LRTGMIHQHSKGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWV 81
           +  G   +   G+   + + PLG +  +NV  +  ++  +     +      L ++++WV
Sbjct: 20  VFAG--SEIYGGLANSWDYGPLGVELKNNVKKLWWKKFVQDNTYNVGLDCAILMNSEVWV 77

Query: 82  ESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            SG    +   ++   +   R     I      E   ++  +   S   L        +K
Sbjct: 78  ASGHLGGFSDPLMDCKECKSRFRADKIVEDYLTEQGAEVASADGWSNEKLENFIKDKHIK 137

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK-----------------MFVSY 181
                  +      R+F +       +T + S   Y +                      
Sbjct: 138 CPK--CGKENFTSIRKFNLMFKTFQGVTEDASSEIYLRPETAQGIFVNFKNVQRSSRKKV 195

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIV---LADTG-------ETQVFCSKDFMDFP 231
                ++G                   E +        G         + +C    +D  
Sbjct: 196 PFGIGQIGKAFRNEITPGNFTFRTREFEQMELEFFCKPGTDLEWFKYWKDYCWSFLLDLG 255

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           I  EN  F D         +    Y+  +     K      E   V+ R           
Sbjct: 256 INKENLRFRD------HSAEELVFYSKATSDIEYKFPFGWGELWGVADRTDYDLKKH--- 306

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD---------GKGIIWPD 342
             +S         +  + +   +    +GA RV  A +  ++D            + +  
Sbjct: 307 MDHSGEDMNYLDPSTNEKYVPYVIEPSLGADRVALAFLIDAYDEEELEGGDQRIVLHFHP 366

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            +AP K +++ +        +    +Y+++S    ++ +D+ G  IG ++   D +G P 
Sbjct: 367 QIAPIKAAVLPLSKK---LSEKALDVYSKISSK-FNIEYDETG-SIGKRYRRQDEIGTPY 421

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            + V    + D  V I+ R +  +  + +
Sbjct: 422 CITVDFDTLEDEAVTIRDRDSMSQVRVKI 450


>gi|302389916|ref|YP_003825737.1| histidyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
 gi|302200544|gb|ADL08114.1| histidyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
          Length = 423

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 79/405 (19%), Positives = 125/405 (30%), Gaps = 19/405 (4%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +  I RE   + G  E+  PT +  +L+        D   KEM   +D++ +++   P  
Sbjct: 23  LENIFREICGQFGYREIRTPTFEHTELFQRGIGETTDIVEKEMYTFSDKSGRSITLKPEG 82

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   +  H    + +P   + I   FR E        R REF      +F       
Sbjct: 83  TAPVARAYIEHKLYNKPMPVKLFYITPCFRYERPQAG---RQREFHQFGIEAFGSPSPLI 139

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                 + V +L    RLGL S+ +R  S             L D    +     D    
Sbjct: 140 DVEVITLAVFFL---KRLGLDSLEVRINSIGCERCREDYKKALEDFLFEKANSLCDTCKV 196

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK-LFDSLPEN------KRVSARGIE 283
            +        D            AP        N +  FD + +       K     GI 
Sbjct: 197 RLGRNTLRILDCKDPGCQKLLVEAPVILEYLCDNCRGHFDEVKKGLSALDVKYSVDPGIV 256

Query: 284 VGHIFYFGT---KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            G  +Y  T     S  + A      G  +   +   G          I        +  
Sbjct: 257 RGLDYYTKTVFEIISKDLGAQSTVCGGGRYDHLVEECGGPPTPAAGFGIGIERLIMVLEA 316

Query: 341 P-DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
                 P     + I   D+  RD   K+  RL   G     D +G  + +Q   AD + 
Sbjct: 317 NGLLDIPPIQMDVFIAVLDETYRDYGLKLLYRLRMAGFSAETDYVGRSLKAQMKYADKIP 376

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
                I+G   V    + +K   TG +E +  EEV  Y  ++   
Sbjct: 377 SKYAFIIGEDEVKTGIITVKDLTTGEQEKVPCEEVETYLKNKIRK 421


>gi|223995497|ref|XP_002287422.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976538|gb|EED94865.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 517

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 68/429 (15%), Positives = 131/429 (30%), Gaps = 59/429 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    D +   +       GA     P L     L  E+   D + KE   +
Sbjct: 43  GCMVIKPWGMSIWDQIRNDLDARIKEHGAENAYFPLLIPKSFLSKEAEHVDGFAKECAVV 102

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                  +   P+ E  +     + ++    +  T   +                     
Sbjct: 103 TH---HRLTVDPSGEGGLIADPEAELEDPLIIRPTSETMIWN----------------MF 143

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            K   S    P       N M             + +     +     + + E     D+
Sbjct: 144 KKWIVSHRDLPLKMNQWANVMRWEMRTRPFLRTSEFLWQEGHTAHATSEGALE-----DS 198

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                  ++   +            I    S  E++     A      E L         
Sbjct: 199 KLMLDQYAEMCQNLLA------IPVIKGAKSPSERFA---GAEETFTIEAL--------M 241

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            +   ++ G   + G  +      TF+ A+GK   V   S+G+ + R++ A+I +  D  
Sbjct: 242 QNGWALQSGTSHFLGQSFGKAFDVTFQDAEGKQQDVWGTSWGV-STRLIGALIMTHSDDA 300

Query: 337 --GIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYARLSKVGCDVFWDDMG-EQIG 389
              +    +     +  I  K +D+       +A +K+ A L   G  V  DD    + G
Sbjct: 301 GLVLPPRVAPVQVVVVPIPPKKNDEEGKVALNNALDKMVANLKSAGLKVKVDDRDYVRNG 360

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEV-------INYASH- 440
           +++   +  G PL++ +G + V       K+R     +E +SL+EV       ++     
Sbjct: 361 AKYFEWERKGVPLRIELGPRDVKGGVCVFKYRVGKEEKETVSLDEVSVMAVKGLDELQEN 420

Query: 441 RFSNNRPVL 449
              + +  L
Sbjct: 421 LLESAKERL 429


>gi|16079810|ref|NP_390634.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310694|ref|ZP_03592541.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315018|ref|ZP_03596823.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221319939|ref|ZP_03601233.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324220|ref|ZP_03605514.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|3122900|sp|O32039|SYH_BACSU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|2635220|emb|CAB14715.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 424

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/404 (14%), Positives = 111/404 (27%), Gaps = 18/404 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I+R+        E+  P  +  +L+        D   KEM    DR  +++   
Sbjct: 20  WQFVEQIMRDTCRTYQYKEIRTPIFEHTELFARGVGESTDIVQKEMYTFEDRKGRSLTLR 79

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P            + + +    P   Y +   FR E        +  +F ++        
Sbjct: 80  PEGTAAAVRAFNENKLFANPVQPTKLYYVGPMFRYERPQTGRYRQFYQFGIEA--IGSKD 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P             Y +         I    +          E +V       + FCS  
Sbjct: 138 PAIDAEVMALAMSIYEKAGLENVKLVINSLGDQDS--RKSYREALVKHFEPRIEEFCSDC 195

Query: 227 FMDFPIPSENTDFDDIIS-----------LNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                                        L  + E+  A +       N+       +  
Sbjct: 196 QSRLHTNPLRILDCKKDRDHELMKSAPSILTYLNEESAAYFEKVKQYLNDLGISYEIDPN 255

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V          F   +      + T     G+   +     G  A  +  A+       
Sbjct: 256 LVRGLDYYNHTAFEIMSNAEGFGAITTLAGGGRYDGLVEQIGGPEAPGIGFAMSIERLLA 315

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   K     I    +  +D    +  +L + G     D   +++  QF  A
Sbjct: 316 AIDAEKRELPVDKGIDCYIVTLGEKAKDYSVSLVYKLREAGISSEIDYENKKMKGQFKTA 375

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           D L      I+G   ++ +K+ +K   TG + +++L+E I+   
Sbjct: 376 DRLKARFIAILGEDELAQNKINVKDAQTGEQIEVALDEFIHVMK 419


>gi|297531631|ref|YP_003672906.1| glycyl-tRNA synthetase [Geobacillus sp. C56-T3]
 gi|297254883|gb|ADI28329.1| glycyl-tRNA synthetase [Geobacillus sp. C56-T3]
          Length = 460

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/437 (13%), Positives = 135/437 (30%), Gaps = 42/437 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     + +    L +   W  SG   ++   M+   
Sbjct: 32  WDYGPLGVELKNNIKRAWWKKFVQESPYNVGLDAAILMNPRTWEASGHLGNFNDPMVDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             +                R+F +
Sbjct: 92  QCKARHRADKLIEKALEEKGIEMIVDGLPLAKMDELIKEYDIACPECGSRDFTNVRQFNL 151

Query: 158 KDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--- 208
                  +T   +   Y        +FV++  +   +  K     A+ G    +      
Sbjct: 152 MFKTYQGVTESSANEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIAQIGKSFRNEITPGN 211

Query: 209 -------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                        EF          +   K F    + S     D+I   +   E+ +  
Sbjct: 212 FTFRTREFEQMELEFFCKPGEELQWLEYWKQFCKEWLLSLGMKEDNIRLRDHAKEELSHY 271

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             AT+D+     F    E   +++R            +YS            + +     
Sbjct: 272 SNATTDIEYHFPF-GWGELWGIASRTDYDLKRH---MEYSGEDFHYLDQETNERYIPYCI 327

Query: 316 SYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACE 366
              +GA RV  A +  ++D +          +    ++AP+K +++ +        D   
Sbjct: 328 EPSLGADRVTLAFMIDAYDEEELEDGTTRTVMHLHPALAPYKAAVLPLSKK---LADGAR 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +IY  L      V +D+ G  IG ++   D +G P  +    +   D +V ++ R T  +
Sbjct: 385 RIYEEL-AKHFMVDYDETG-SIGKRYRRQDEIGTPFCITYDFESEQDGQVTVRDRDTMEQ 442

Query: 427 EDMSLEEVINYASHRFS 443
             + + E+  +   + +
Sbjct: 443 VRLPIGELKAFLEEKIA 459


>gi|126436034|ref|YP_001071725.1| glycyl-tRNA synthetase [Mycobacterium sp. JLS]
 gi|126235834|gb|ABN99234.1| glycyl-tRNA synthetase [Mycobacterium sp. JLS]
          Length = 468

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 65/439 (14%), Positives = 137/439 (31%), Gaps = 42/439 (9%)

Query: 40  YSWLPLGQKALDNVNA-IIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+     R     R   + +    +    +WV SG  + +     E L
Sbjct: 35  WDYGPLGVELKENIKRQWWRSVVTGRDDVVGLDSAIILPRQVWVASGHVEVFNDPLVECL 94

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSR 153
               R+ +  +     E+       +   S             K +  E R    ++++ 
Sbjct: 95  NCHKRHRQDHLQEAYFEKRGAKDGLAGPDSVPMDEIACPDCGTKGQWTEPRDFNMMLKTY 154

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAES 199
              ++           +       F + +                  R  +        +
Sbjct: 155 LGPIETEEGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQIGKSFRNEITPGNFIFRT 214

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                     F+  +   E   +     + + +     D D++       ++ +     T
Sbjct: 215 REFEQMEMEFFVEPSTAKEWHQYWIDTRLQWYV-DLGIDRDNLRLFEHPKDKLSHYSDRT 273

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSY 317
            D+  +  F   P  +     G+     F   T  K+S    + +  A    +   +   
Sbjct: 274 VDIEYKFGFAGNPWGELE---GVANRTDFDLSTHAKHSGADLSFYDQATETRYTPYVIEP 330

Query: 318 GIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDA 364
             G  R + A +  S+                       +AP K +++ +  H       
Sbjct: 331 AAGLTRSLMAFLVDSYTEDEAPNAKGGVDKRTVLRLDPRLAPVKAAVLPLSRH-ADLSPK 389

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              + A L K   +V +DD G  IG ++   D +G P  + V    ++D  V I+ R T 
Sbjct: 390 ARDLAAELRKNW-NVEFDDAGA-IGRRYRRQDEIGTPYCITVDFDSLTDHAVTIRERDTM 447

Query: 425 IREDMSLEEVINYASHRFS 443
            ++ ++L EV +Y + R  
Sbjct: 448 TQDRVALSEVSDYLAVRLK 466


>gi|326794213|ref|YP_004312033.1| glycyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
 gi|326544977|gb|ADZ90197.1| glycyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
          Length = 458

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 66/461 (14%), Positives = 143/461 (31%), Gaps = 63/461 (13%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G I Q S      +G Y + PLG +  +N+           R     +    +Q+  +
Sbjct: 15  RRGFIFQGSEIYGGMQGAYDYGPLGTELKNNLKNAWWRAMVYERDDVEGLDAAIIQNKHV 74

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           +  SG  D++   M+   +                          +              
Sbjct: 75  YKYSGHEDTFTDPMVDCHE------------------CKSRMRADHMKDIKKCDNCGSDN 116

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRA 197
             E R    + ++    M +  S+      +       F + +    R      +   ++
Sbjct: 117 VTEPRDFNLMFKTNVGPMVNEDSYTYLRPETAQGIFTNFKNVVDSTSRALPFGIAQIGKS 176

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFC----SKDFMDFPIPSENTDFDDIISLNSIVEQW- 252
               I        +   +  E + FC     + + DF + +    + D       ++   
Sbjct: 177 FRNEITPRNFIFRVREFEQMELEFFCKPGEDEKWHDFWVETRKQWWLDQGLTEENIQFEY 236

Query: 253 -----TAPYAATSDVHNEKLFDSLPENKRVSARG-IEVGHIFYFGTK-----------YS 295
                 A Y+ ++     K      E + V+ R   ++G       +           +S
Sbjct: 237 VTGDDLAHYSKSTVDILYKFPHGFEELEGVANRTDYDLGSHTKAQEEFDLSAKVKKNEHS 296

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV---------IESSHDGKGIIWPDSVAP 346
               A       K           G  R + A+         +E+      + +   +AP
Sbjct: 297 TAKLAVRDLEANKWEVPFCIEPSAGLDRGMLAIMTEAYTEEELENGSTRTVLKFKPHLAP 356

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVI 405
            K++++ +K +        +++  +L K+G   + +++ G  +G  +   D +G PL V 
Sbjct: 357 IKVAILPLKKNKPEIVALAKELKNKLQKLGLGRILYENTG-NVGKGYRRHDEVGTPLCVT 415

Query: 406 VGSKFVSDSK--VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           V    +      V ++ R T  +  +   E+  Y  + F N
Sbjct: 416 VDFDSIEKDDAPVTVRDRDTMEQVAIPAAELPAYIINYFVN 456


>gi|313123580|ref|YP_004033839.1| histidyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280143|gb|ADQ60862.1| Histidyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|325684223|gb|EGD26399.1| histidine--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 428

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/424 (14%), Positives = 129/424 (30%), Gaps = 20/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP      + V    R+   R    E+  P+ ++ +L+  S     D   KEM  
Sbjct: 8   GTVDILPETSGQWEKVEQTARDLFKRANYHEIRTPSFENYELFSRSSGETSDVVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +   +  +         PF  Y I   +R E        R R
Sbjct: 68  FEDKGGRHIALRPEGTAGVVRAYVENKIYGPDYVKPFNVYYIAAMYRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPE---------GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF              G          +Y    + LG   +        +  
Sbjct: 125 EFHQIGVESFGSDGYLADVETILLGHDLLAELGVKNYELHINTLGDSEVRQAYHDALVDY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               +  +  D+           +D     +     +   +   +++ +           
Sbjct: 185 FTPVKDQLSEDSQRRLGKNPLRILDSKAEEDQQFLPEAPKIRDYLDEESKENFNKILASL 244

Query: 265 EKLF-DSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           +KL    + ++  V       G IF F     +L  S +     G+ +++     G    
Sbjct: 245 DKLGVKYVIDDDLVRGLDYYTGVIFEFMVDDPTLWASPSTVLGGGRYNHLVEEFSGPETP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E             +   +     I    +       ++  +L  +G    +D
Sbjct: 305 AVGFGIGEERLMLVLSKQNPEMFEDQGIDFFITNIGEGTDIKAVEVARQLRSLGFSAQYD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY--ASH 440
              +++ +QF  AD +G    V +G+K +++ K+ +K    G +  +   ++ +      
Sbjct: 365 VDQKKLKAQFRKADRVGARYVVTLGAKELAEGKLTVKRLSDGQQFSLEFTDLEDKANLLS 424

Query: 441 RFSN 444
           +   
Sbjct: 425 KIEK 428


>gi|319400901|gb|EFV89120.1| glycyl-tRNA synthetase [Staphylococcus epidermidis FRI909]
          Length = 463

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/445 (12%), Positives = 134/445 (30%), Gaps = 55/445 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN-----RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +N+     ++         G   +    L +   W  SG   ++   M+
Sbjct: 32  WDYGPLGVELKNNIKKAWWQKFITQSPYNVG---IDAAILMNPKTWEASGHLGNFNDPMI 88

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHI-----KSYRNLPFTFYQIQLKFRDELRPRFGV 149
              D +          E+ M +            S+  +        +         +  
Sbjct: 89  DNKD-SKIRYRADKLIEDYMQNEKGDENFIADGLSFDEMKKIIDDEGIVCPVSKTANWTD 147

Query: 150 MRSREFLMKDAYSFDLTPEG----SKHSYNKMFVSYLRIFH-----------------RL 188
           +R    + K                  +   +FV+Y  +                   R 
Sbjct: 148 IRQFNLMFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRN 207

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +        +          F    +  E Q +      ++    +    +D + L   
Sbjct: 208 EITPGNFIFRTREFEQMELEFFCKPGEEIEWQNYWKTFASEWLT--DLNISEDNMRLRDH 265

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
            E   + Y+  +     K      E   +++R           +++S            +
Sbjct: 266 DEDELSHYSNATTDIEYKFPFGWGELWGIASRTDYDLRQH---SEHSGEDFKYHDPETNE 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHD----------GKGIIWPDSVAPFKISLINIKAHD 358
            +        +GA RV  A +  ++              + +  ++AP+K +++ +    
Sbjct: 323 KYIPYCIEPSLGADRVTLAFLCDAYAEEGVEGSKDARTVMHFHPALAPYKAAVLPLSKK- 381

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   KI+ +LS     + +D+  + IG ++   D +G P  +      + D++V +
Sbjct: 382 --LSSEAIKIFEQLSSS-FAIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQVTV 437

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R +  +  M + E+  + + +  
Sbjct: 438 RDRDSMEQVRMPISELETFLADKVK 462


>gi|196249826|ref|ZP_03148522.1| glycyl-tRNA synthetase [Geobacillus sp. G11MC16]
 gi|196210702|gb|EDY05465.1| glycyl-tRNA synthetase [Geobacillus sp. G11MC16]
          Length = 460

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/437 (13%), Positives = 135/437 (30%), Gaps = 42/437 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     + +    L +   W  SG   ++   M+   
Sbjct: 32  WDYGPLGVELKNNIKRAWWKKFVQESPYNVGLDAAILMNPKTWEASGHLGNFNDPMVDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             +                R+F +
Sbjct: 92  QCKARHRADKLIEQALEEKGIEMVVDGLPLAKMEELIREYDIACPECGSRDFTNVRQFNL 151

Query: 158 KDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAE------------- 198
                  +T   +   Y        +FV++  +   +  K     A+             
Sbjct: 152 MFKTYQGVTESSANEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIAQIGKSFRNEITPGN 211

Query: 199 -SGPIGGDLSHEFIVLADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            +         E       GE   +    K F    + S   + + I   +   E+ +  
Sbjct: 212 FTFRTREFEQMELEFFCKPGEELKWFDYWKQFCKEWLLSLGMNEEHIRLRDHTKEELSHY 271

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             AT+D+   +      E   +++R            ++S            + +     
Sbjct: 272 SNATTDI-EYQFPFGWGELWGIASRTDYDLKQH---MEHSGEDFHYLDQETNERYIPYCI 327

Query: 316 SYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACE 366
              +GA RV  A +  ++D +          +    ++AP+K +++ +        D   
Sbjct: 328 EPSLGADRVTLAFMIDAYDEEELEDGTTRTVMHLHPALAPYKAAVLPLSKK---LGDGAR 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +IY  L      V +D+ G  IG ++   D +G P  +    +   D +V ++ R T  +
Sbjct: 385 RIYEEL-AKHFMVDYDETG-SIGKRYRRQDEIGTPFCITYDFESEQDGQVTVRDRDTMEQ 442

Query: 427 EDMSLEEVINYASHRFS 443
             + + E+  +   + +
Sbjct: 443 VRLPIGELKAFLDKKIA 459


>gi|242242837|ref|ZP_04797282.1| glycyl-tRNA synthetase [Staphylococcus epidermidis W23144]
 gi|242233738|gb|EES36050.1| glycyl-tRNA synthetase [Staphylococcus epidermidis W23144]
          Length = 463

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/448 (12%), Positives = 135/448 (30%), Gaps = 61/448 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN-----RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +N+     ++         G   +    L +   W  SG   ++   M+
Sbjct: 32  WDYGPLGVELKNNIKKAWWQKFITQSPYNVG---IDAAILMNPKTWEASGHLGNFNDPMI 88

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHI-----KSYRNLPFTFYQIQLKFRDELRPRFGV 149
              D +          E+ M +            S+  +        +         +  
Sbjct: 89  DNKD-SKIRYRADKLIEDYMQNEKGDENFIADGLSFDEMKKIIDDEGIVCPVSKTANWTD 147

Query: 150 MRSREFLMKDAYSFDLTPEG----SKHSYNKMFVSYLRIFH-----------------RL 188
           +R    + K                  +   +FV+Y  +                   R 
Sbjct: 148 IRQFNLMFKTFQGVTEDSTNELFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRN 207

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +        +          F    +  E Q +      ++    +    +D + L   
Sbjct: 208 EITPGNFIFRTREFEQMELEFFCKPGEEIEWQNYWKTFASEWLT--DLNISEDNMRLRDH 265

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKG-A 305
            E   + Y+  +     K      E   +++R       F    ++S        +    
Sbjct: 266 DEDELSHYSNATTDIEYKFPFGWGELWGIASR-----TDFDL-RQHSEHSGEDFKYHDPE 319

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHD----------GKGIIWPDSVAPFKISLINIK 355
             + +        +GA RV  A +  ++              + +  ++AP+K +++ + 
Sbjct: 320 TNEKYIPYCIEPSLGADRVTLAFLCDAYAEEGVEGSKDARTVMHFHPALAPYKAAVLPLS 379

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                      KI+ +LS     + +D+  + IG ++   D +G P  +      + D++
Sbjct: 380 KK---LSSEAIKIFEQLSSS-FAIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQ 434

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           V ++ R +  +  M + E+  + + +  
Sbjct: 435 VTVRDRDSMEQVRMPISELETFLADKVK 462


>gi|331698238|ref|YP_004334477.1| glycyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
 gi|326952927|gb|AEA26624.1| glycyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
          Length = 465

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 61/433 (14%), Positives = 125/433 (28%), Gaps = 37/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+           R   + +    +    +WV SG    +     E L
Sbjct: 37  WDYGPLGVELKENIKRQWWRTMVTGREDVVGLDSSVILPRQVWVASGHVGVFNDPLVECL 96

Query: 95  RLADRNDKAMIYGPTHEEVM----------TDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
               R     +     E                     +     P  F  +       ++
Sbjct: 97  SCHKRFRADQLAEEYVERTGKTASEDDLSDVPCPNCGTRGQYTPPQDFNMMLETHLGPVK 156

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              G+   R    +  +   L  + +        +  +    R  +        +     
Sbjct: 157 TDEGLHYLRPETAQGIFVNFLNVQTTSRKKPPFGIGQMGKSFRNEITPGNFIFRTREFEQ 216

Query: 205 DLSHEFIVL-ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                F+    D    Q +  +    +         +++       E+ +     T D+ 
Sbjct: 217 MEMEYFVEPGTDEELHQYWIDERTRWYT--DLGIARENLRHYEHPKEKLSHYSKRTVDIE 274

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGIGA 321
               F      +     GI     F   T   +S    + +  A G  +   +     G 
Sbjct: 275 YRFEFTGQEWGELE---GIANRTDFDLTTHSNHSGVDLSFYDQASGTRYRPYVIEPAAGV 331

Query: 322 MRVVAAVIESSHDGKGIIWPDSVA------PFKISLINIKA------HDQVCRDACEKIY 369
            R + A +  ++                       L  +KA       +         + 
Sbjct: 332 GRSMMAFLIEAYTEDEAPNAKGGVDKRVVLRLDRRLAPVKAAVLPLSRNADLSPKARDLA 391

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A L +   +V +DD G  IG ++   D +G P  + V    ++D  V I+ R T  +E +
Sbjct: 392 AALRRNW-NVEFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLTDQAVTIRERDTMSQERI 449

Query: 430 SLEEVINYASHRF 442
           +L++V +Y + R 
Sbjct: 450 ALDQVESYLAARL 462


>gi|152977206|ref|YP_001376723.1| glycyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025958|gb|ABS23728.1| glycyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 458

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/437 (12%), Positives = 133/437 (30%), Gaps = 43/437 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   WV SG   ++   M+   
Sbjct: 31  WDYGPLGIELKNNVKKAWWKKFIQESPYNVGLDAAILMNPKTWVASGHVGNFNDPMIDCK 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 91  KCKARHRADKLIEDALDAKGIEMIVDGLTFEQMADLMKEHEVKCPDCGSQEFTEIRQFNL 150

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       +D + L    E+  +
Sbjct: 211 FTFRTREFEQMELEFFCKPGEELEWFTFWRETCKNWLL--SLGMNEDSMRLRDHGEEELS 268

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
            Y+  +     K      E   +++R            ++S            + +    
Sbjct: 269 HYSNATTDIEFKFPFGWGELWGIASRTDFDLKRH---MEHSSEDFNYIDPQTNERYVPYC 325

Query: 315 GSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACE 366
               +GA RV  A +  +++ + +         +  ++AP+K +++ +        +   
Sbjct: 326 IEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEGAR 382

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T  +
Sbjct: 383 EVFAEL-AKDFMVDYDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTMEQ 440

Query: 427 EDMSLEEVINYASHRFS 443
             M + E+ ++   +  
Sbjct: 441 VRMPISELKSFLEKKIQ 457


>gi|149195568|ref|ZP_01872625.1| glycyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
 gi|149141030|gb|EDM29426.1| glycyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
          Length = 485

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/483 (11%), Positives = 131/483 (27%), Gaps = 81/483 (16%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G+I Q S       G + + P G      V A   +     R   +      +    +
Sbjct: 16  RRGLIFQSSELYGGFNGFWDYGPYGTAMRRAVEATWWDYMVEQRENVVGQDSTIICHPQV 75

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEE--------------------------- 112
           W  SG  D +   M+   D   +  I     ++                           
Sbjct: 76  WKASGHVDQFADIMVDNKDSKKRYRIDNLLEQQSEEILAKVAELMGSTSDIGKLEAAFET 135

Query: 113 -------------------VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
                                TD         +        +   F +E +        +
Sbjct: 136 KLQEGENIDSVLADAKVVDPSTDKVGDWTPPRQFNLMMQTYVGPVFSEENKAYLRAETCQ 195

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
              +      + T +       +   ++    +               +       F   
Sbjct: 196 PIFVNFQTICNSTRQKLPFGIAQTGKAFRNEINPRNFTFRSREFNQMEM-----EFFCHS 250

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D+ +   F     + F         + + + +       A YA  +     +      E
Sbjct: 251 DDSMDWYNFWRDQRLAFYSDVLKFKPESMRTHDHDK---LAHYAKAAMDIEFEFPFGWGE 307

Query: 274 NKRVSARG-IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
            + +  RG  ++     F  +        F     + +   +    +G  R++ A++  +
Sbjct: 308 LEGIHHRGTWDLSQHAEFSGQKQEY----FDQGRNEKYIPTVVETSVGLDRLMLALLCEA 363

Query: 333 HDGKGIIWPD------------SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +D                      A      + I    +   +   +++A+L        
Sbjct: 364 YDEDEAETAKDGKEVEGRVVMRFPAIIAPVQVAILPLSKKLGEGARELHAKLKPF-FRSE 422

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +D+  + IG ++   D +G P  +      + D+ V ++ R T  +E ++++++ NY   
Sbjct: 423 YDE-AQSIGKRYRRQDEIGTPFCLTFDFDSLEDNCVTVRERDTMSQERVAIDQLANYLMD 481

Query: 441 RFS 443
           +  
Sbjct: 482 KIR 484


>gi|226321240|ref|ZP_03796773.1| Threonyl-tRNA synthetase [Borrelia burgdorferi 29805]
 gi|226233369|gb|EEH32117.1| Threonyl-tRNA synthetase [Borrelia burgdorferi 29805]
          Length = 231

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 78/234 (33%), Gaps = 16/234 (6%)

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
               T   +   +    +  +        D      I +   A Y    D+   K+ DSL
Sbjct: 12  AYLSTKPDKSVGNDSDWEMSLKVLEETLSDFEVPYEIDKGGGAFYGPKIDL---KIVDSL 68

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
               ++S    +    F    ++++  +A       +     +    +G++     ++  
Sbjct: 69  EREWQMSTIQFD----FNLPERFNMTYTAE---DGKEKRPFMIHRALLGSIERFFGILVE 121

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            + G   +W   V    I + NI        D   K++ +    G  +  D+   ++ ++
Sbjct: 122 HYGGAFPLWLSPVQVVIIPVNNI------VEDYAIKVFNKFKNEGIRIKLDNSSSRMNAK 175

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
                    P   I+G +  ++ ++ I+ R       + L+E + +   +  + 
Sbjct: 176 IREYQAKKIPYMFIIGEREATEERISIRTRTNEQINGIKLDEALKFILFKIRDK 229


>gi|225387782|ref|ZP_03757546.1| hypothetical protein CLOSTASPAR_01552 [Clostridium asparagiforme
           DSM 15981]
 gi|225046116|gb|EEG56362.1| hypothetical protein CLOSTASPAR_01552 [Clostridium asparagiforme
           DSM 15981]
          Length = 462

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 63/439 (14%), Positives = 134/439 (30%), Gaps = 46/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++        + +    L ++  WV SG    +   ++   
Sbjct: 32  WDYGNLGVELKNNVKKAWWQKFVMESPYNVGVDCAILMNSQTWVASGHLGGFSDPLMDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              ++        E+   +       S   +       Y                   R+
Sbjct: 92  QCKER-FRADKLIEDYNAEHGIEMEGSIDGWSQEQMKQYIEDNHICCPSCGAHDFTDIRQ 150

Query: 155 FLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP---- 201
           F +       +T +     Y +          F +  R   +     I    +S      
Sbjct: 151 FNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEIT 210

Query: 202 ---------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                        +  EF     T        K F    + +     D++ + +   E+ 
Sbjct: 211 PGNFTFRTREFEQMELEFFCKPGTDLEWFAYWKQFCIDWLRTLGIKEDEMRARDHSPEEL 270

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
              Y+  +            E   ++ R              S      F     + +  
Sbjct: 271 -CFYSKATTDLEFLFPFGWGELWGIADRTDYDLTQHQ---NVSGQDMTYFDDESKEKYIP 326

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRD 363
            +    +GA RV  A + +++D + +          +  ++AP KI ++ +        +
Sbjct: 327 YVIEPSLGADRVTLAFLCAAYDEEELAEGDVRTVLRFHPAIAPVKIGILPLSKK---LNE 383

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             EK++A LSK   +  +DD G  IG ++   D +G P  +        D  V ++ R T
Sbjct: 384 GAEKVFAELSKY-YNCEFDDRG-NIGKRYRRQDEIGTPFCITYDFDSEEDHAVTVRDRDT 441

Query: 424 GIREDMSLEEVINYASHRF 442
             +  + + E+  Y + +F
Sbjct: 442 MDQVRVPIAELRTYFADKF 460


>gi|127512223|ref|YP_001093420.1| histidyl-tRNA synthetase [Shewanella loihica PV-4]
 gi|166228614|sp|A3QCG3|SYH_SHELP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|126637518|gb|ABO23161.1| histidyl-tRNA synthetase [Shewanella loihica PV-4]
          Length = 423

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 69/423 (16%), Positives = 133/423 (31%), Gaps = 27/423 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        + A++R+     G  E+  P ++S DL+  S G   D   KEM  
Sbjct: 10  GMNDILPTQSPLWQKLEAVLRDTVAAYGYSEIRTPIVESTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN   +   P            H   Y      +Y +   FR E   +    +  +F
Sbjct: 70  FADRNGDLLTLRPEGTASTVRAGNEHGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFNQF 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLA 214
            ++         +      +      L I   + L+ +    A+      D   EF+   
Sbjct: 129 GVEVYGIASADIDAEVLMMSHRLWQKLGISEHVKLELNTLGDAQERAAYRDALVEFLEQH 188

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD----- 269
           +    +    +     P+   ++   D+ +L              S  H   L +     
Sbjct: 189 EEKLDED-SQRRMYSNPLRVLDSKNPDVQALLGDAPALMDYLGEESRGHFAHLCELLEAV 247

Query: 270 --------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                    L        R +        G + ++     + G  G+       + G   
Sbjct: 248 GIQYEINPRLVRGLDYYNRTVFEWVTDSLGAQGTVLAGGRYDGLVGQLGGKDTPAVGFAM 307

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV-GCDVF 380
                 ++  +      +            + + A    CR A  K+  +L +V G  V 
Sbjct: 308 GLERIVLMLETLALTDDVSGP-------VDVYVTAMGDDCRVAAIKVAQQLREVDGLKVM 360

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYAS 439
               G     Q   AD  G  L +++G   +++ +V +K+ R    +E ++ + +  Y +
Sbjct: 361 SHCGGGNFKKQMKRADKSGAKLAIVIGETELANGQVALKYLREEKEQELVAQDSLAAYVA 420

Query: 440 HRF 442
              
Sbjct: 421 ELI 423


>gi|148655020|ref|YP_001275225.1| glycyl-tRNA synthetase [Roseiflexus sp. RS-1]
 gi|148567130|gb|ABQ89275.1| glycyl-tRNA synthetase [Roseiflexus sp. RS-1]
          Length = 530

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 74/515 (14%), Positives = 150/515 (29%), Gaps = 105/515 (20%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNA-IIR-EEQNRTGAIEMSVPTLQSADL 79
           R G +   S      +G++ W PLG +  +N+ +   R     R     +    L +   
Sbjct: 15  RRGFVFPSSEIYGGLQGVFDWGPLGVELKNNIISSWWRTNVYERDDMEGLDAAILMNRLT 74

Query: 80  WVESGRYDSYGKEMLRLADRNDKA------------------------------------ 103
           W  SG  +++   ++   D   +                                     
Sbjct: 75  WRYSGHEETFNDPLVDCRDCKSRWRADHIRGRCPNCGSTNLTEPRPFNMMFKTAVGPVAD 134

Query: 104 -----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
                 +   T + +  +       S R LPF   Q+   FR+E+ PR  + R REF   
Sbjct: 135 ADSFAYLRPETAQGIFVNFGNVLATSSRKLPFGIAQVGKAFRNEINPRNFLFRVREFEQM 194

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
           +   F + P      + +     L  +  +G+    ++      +        + + +  
Sbjct: 195 EIEYFVM-PGTEDEWHQRWLEDRLAWWESIGIPRARIKIYDVPPDELAHYSKRTFDLMYD 253

Query: 214 ADT-GETQVFCSKDFMDFPIPSE---------------------NTDFDDIISLNSIVEQ 251
             T G  +V       D+ + S                         + D  S   IV  
Sbjct: 254 YPTLGYEEVEGIASRTDYDLGSHSRDQETLNLTARANPNRDSTARLTYYDPESRRHIVPF 313

Query: 252 WT--------APYAATSDVHNEKLFDSLPENKRVSA----------RGIEVGHIFYFGTK 293
                        A  ++ ++E++  + P  +  +            G            
Sbjct: 314 VIEPSAGVGRCFLAVLAEAYDEQMVKAPPPERVHAVTDALEAFLKSVGRNEKLASEIRDA 373

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAM-----RVVAAVIESSHDGKGI---IWPDSVA 345
                 A   G       ++      GA      + +    +   D            +A
Sbjct: 374 LVERGQAILAGLPETMPQIETLLAMPGADQIDIGKKLRGQAQGPIDEYFRTVLHLKPHLA 433

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSK-VGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           P ++++  +K + +       ++   +         +DD G  IG  +   D +G P  V
Sbjct: 434 PIRVAVFPLKRNHEGLVAMARELRTAIQSGSSFRTVYDDTGA-IGKLYRRQDEIGTPYCV 492

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            V  + + D  V ++ R T  +  +   EV  Y +
Sbjct: 493 TVDFQSLEDGTVTVRDRDTMQQVRIPASEVRAYVT 527


>gi|78185909|ref|YP_373952.1| glycyl-tRNA synthetase [Chlorobium luteolum DSM 273]
 gi|78165811|gb|ABB22909.1| glycyl-tRNA synthetase [Chlorobium luteolum DSM 273]
          Length = 489

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 64/479 (13%), Positives = 125/479 (26%), Gaps = 63/479 (13%)

Query: 18  AEIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM-- 69
            ++ S  L  R G I   S         + + PLG +   N+  +      R     +  
Sbjct: 21  HKLVS--LAKRRGFIFPSSEIYGGLSSCFDYGPLGSEMKRNIKELWWNAMTRR-HQNIVG 77

Query: 70  -SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
                + +  +W  SG   S+   M+   DR  K         E   +  R   K    L
Sbjct: 78  IDASIMMNPTVWEASGHVASFNDPMID--DRTTKRRYRADHLIENHIEKLRRDGKDADAL 135

Query: 129 PFTFYQIQLKFRDELR--------------PRFGVMRSREFLMKDAYSFDL--------- 165
                       +E                P  G     E    +               
Sbjct: 136 RVQMTYEACGASEEPNRALYELIIDEGIKAPDTGSGDWTEVRQFNLMFQCNMGAVADSSG 195

Query: 166 -----TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
                         N   V            +   +A    I        +V  +  E Q
Sbjct: 196 VVYLRPETAQGIFVNFHNVRESSRMKVPFGIAQIGKAFRNEIVKGNFIFRMVEFEQMEMQ 255

Query: 221 VFCSKDFMDFPIPSENTDFDDI---------ISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            F           +   +               L+       A YA  +     +    +
Sbjct: 256 YFVKPGTQAEAFEAWREERYQWYTRQLGIRPEKLHWYKHDKLAHYADLAYDIKFEFPFGI 315

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E + + +R            +YS            +     +     G  R+  A++  
Sbjct: 316 EEIEGIHSRTDFDLSRHQ---EYSGKNMEYVDQVTNERFIPYVVETSAGCDRLFLAILSD 372

Query: 332 SHDGKGIIWPDSVAPFKISLINIKA-------HDQVCRDACEKIYARLSKVGCDVFWDDM 384
           ++    +   + V       +                 +A  K+   L++    V +DD 
Sbjct: 373 AYSEDVVDGEERVVLKLAPKVAPVKAAVLPLMKKGGMGEAAMKLRDELAES-FPVQYDD- 430

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              IG ++   D +G P  + V  + + D  V ++ R T  +E + + +   + + + +
Sbjct: 431 AASIGKRYRRQDEIGTPFCITVDHQSIEDGTVTVRFRDTAQQERIDMSQTAAFITAKMA 489


>gi|212638574|ref|YP_002315094.1| histidyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
 gi|226737064|sp|B7GFR0|SYH_ANOFW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|212560054|gb|ACJ33109.1| Histidyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
          Length = 423

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 121/414 (29%), Gaps = 16/414 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        +  I RE   R    E+  P  +  +L++       D   KEM    DR 
Sbjct: 13  LPEQAAKWQYIEHIARELCRRYNYQEIRTPIFEHTELFLRGVGDTTDIVQKEMYTFEDRG 72

Query: 101 DKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
            +++   P     +   F  + +    N P   Y +   FR E        +  +F ++ 
Sbjct: 73  GRSLTLRPEGTAAVVRSFVENKMYGDPNQPVKLYYMGPMFRYERPQAGRFRQFVQFGVEA 132

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTG 217
             S    P             Y  +  +     I    +  S         +        
Sbjct: 133 LGSN--DPAIDAEVIALAMDIYRMLGLKKLKLVINSLGDVESRKAHRQALID-HFQPRIH 189

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------ 271
           E    C       P+   +   D    L              S  + EK+   L      
Sbjct: 190 EFCDDCQARLHKNPMRILDCKKDRDHELMRTAPSILDYLNEQSRTYFEKVQMYLQKLGIA 249

Query: 272 --PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              +++ V          F   ++     + T     G+ + +     G     +  A+ 
Sbjct: 250 FEVDSRLVRGLDYYNHTAFEIMSEAEGFGAITTLCGGGRYNGLVQEIGGPETPGIGFALS 309

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                        S+   +     + A  +  ++    + A L K G     D    ++ 
Sbjct: 310 IERLLAALEAEGISLPISEGIDCYVVALGEQAKEEAVALVAALRKEGISAEKDYQDRKVK 369

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +Q   AD L      I+G   +    + +KH  TG ++++SL   I++  H   
Sbjct: 370 AQLKAADRLHATYVAILGEDELQKGVINVKHMATGEQQEVSLHTFISHMKHVLQ 423


>gi|307243795|ref|ZP_07525926.1| histidine--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
 gi|306492798|gb|EFM64820.1| histidine--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
          Length = 420

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/412 (11%), Positives = 114/412 (27%), Gaps = 30/412 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            + +    R+     G  E+  P  +  +L+        D   KEM    DR D+ +   
Sbjct: 20  WNYLEEKFRDLCRLYGYEEIRTPVFEHTELFKRGVGDTTDIVQKEMYTFKDRGDRDLTLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  +       P   + I   FR E        +  +F ++       TP
Sbjct: 80  PEGTAGVIRAFIENKMYAETQPTKLFYITPCFRYERPQSGRQRQFHQFGVEA--IGSDTP 137

Query: 168 EGSKHSYNKMFVSY-------------LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                  +                            +   +  +      D+  +     
Sbjct: 138 SLDAEVISLAMQFLGEAGLKDLTVSINSVGCPVCREEYNRLLKDYLATKADVLCDLCNDR 197

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPE 273
                                +         ++  + +    A   +++ + + D  +  
Sbjct: 198 RDKNPMRVIDCKNETCQANIVDIPLMADHLCDNCKDHFKQLKAYLDEMNIKYVVDKKIVR 257

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIE 330
                 R          G + ++     + G     G         +G+GA R++  +  
Sbjct: 258 GLDYYKRTAFEIISNDLGAQSTVCGGGRYDGLVEQIGGPSGYSGIGFGLGAERLLLTLEA 317

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           +  +        +     I ++ I       +     I   L +       D +   + +
Sbjct: 318 NGVEIG------NPNHTDIFVVTIGDK---AKLKSFSILKDLRENHISADKDHLDRSLKA 368

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           QF  ++ +     +++G   +   K  +K+  TG ++ + + E++N      
Sbjct: 369 QFKYSNKINAKYTIVIGDDELDKDKATLKNMETGDQKLIKISELVNELRSVL 420


>gi|15605705|ref|NP_213082.1| histidyl-tRNA synthetase [Aquifex aeolicus VF5]
 gi|7674344|sp|O66522|SYH_AQUAE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|2982856|gb|AAC06477.1| histidyl-tRNA synthetase [Aquifex aeolicus VF5]
          Length = 403

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 112/408 (27%), Gaps = 23/408 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G +  L    K    ++   R+        E+ +P ++ A+L+  S     D   KEM  
Sbjct: 8   GFHDILGKDAKKFRKISDTARKILKLYNFEEIILPVVEYAELFQRSVGETTDIVQKEMFV 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  + +   P         F  H           +     FR E        R R+F
Sbjct: 68  FEDRKGRKLALRPEGTAGTVRAFIQHKLYALRPYVKLFYEGPMFRYERPQAG---RYRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
               A  F +    +     K+    L+     G+              +   E ++   
Sbjct: 125 HQIGAEVFGVAEPHADAEIIKIVYDILQALGIKGVVVEINSLGCKK-DREAYREALLNYL 183

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFDSLP 272
           TG  +  CS                 + +    V    +           H EKL + L 
Sbjct: 184 TGVKEELCSDCISRMDRNPLRVLDCKVETCKVAVREAPKMIDFLCDECREHYEKLKNYLK 243

Query: 273 ------ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                        RG++      F             G        ++G     A+    
Sbjct: 244 ALDIPFRENYNLVRGLDYYTRTVFEAVSDELGLTLIAGGRYDYLVEELGGPPTPALGFAL 303

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            V             + V                  +   ++   L K G  V +     
Sbjct: 304 GVERLMLLLPDEEEKEEVYFVIPFG--------DVHEYALRVADILRKKGKVVEYSYRKG 355

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +  Q   AD LG    VI+G   V + +V IK   TG +  + L E+
Sbjct: 356 GLKKQLEFADKLGVKYAVIIGEDEVKNQEVTIKDMETGEQRRVKLSEL 403


>gi|227893458|ref|ZP_04011263.1| histidyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
 gi|227864737|gb|EEJ72158.1| histidyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
          Length = 428

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 66/412 (16%), Positives = 130/412 (31%), Gaps = 18/412 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    +   V  + R   NR    E+  P+ ++ +++  S     +   K+M  
Sbjct: 8   GTVDILPDQSGSWQKVEEVARNFFNRANYREIRTPSFENYEIFSRSSGDSSEIVEKQMYD 67

Query: 96  LADRNDKAMIYGPTHEEV--MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P          +           PF  + ++  FR E        R R
Sbjct: 68  FNDKGGRHIALRPEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF  +   +      M           +Y    + LG + +        +  
Sbjct: 125 EFHQIGVESFGSSNPLADVQTIMMGHDLLGELGVKNYQLHINTLGNEQVRQDYHDALVNY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               +  +  D+           +D     +     D   +   ++  +     T     
Sbjct: 185 FTPVKDELSEDSQRRLRDNPLRILDSKDDRDKKFLPDAPKIRDFLDDDSKQNFETILKML 244

Query: 265 EKL-FDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           ++L  D + ++  V       G IF F     SL  SAT     G+  ++     G    
Sbjct: 245 DQLGIDYVIDDDLVRGLDYYTGVIFEFMVEDKSLWESATTILGGGRYDHLVEEFNGPATP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E            ++         I    +       +I   L K G +  +D
Sbjct: 305 AVGFGIGEERLMLVLEKQNPALFKQHGIDFFITNIGEGTAQKAIEITRSLRKQGFEADFD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +++ +QF  AD       + +G K +++  + +K    G   D++LE++
Sbjct: 365 VNQKKLKAQFKKADRDHAKYVITLGEKELANGILNVKRLADGKTIDLNLEDI 416


>gi|320095946|ref|ZP_08027565.1| glycyl-tRNA synthetase beta subunit [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319977117|gb|EFW08841.1| glycyl-tRNA synthetase beta subunit [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 509

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/433 (13%), Positives = 134/433 (30%), Gaps = 37/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +     R   + +    +   + WV SG   ++   ++   
Sbjct: 82  WDYGPLGVELKENIKRQWWDHMVRRRADVVGLDSSVILPRETWVASGHVKAFTDPLIECL 141

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           + + +A       E            S  ++P     ++ ++  E R   G++++    +
Sbjct: 142 NCHKRAREDQLVEELAAKKGVEESQVSLADVPCPNCGVRGQWT-EPRAFSGLLKTFLGPV 200

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLSHE 209
            D          +       F + +    +         G            I      E
Sbjct: 201 DDEAGLHYLRPETAQGIFINFANVMTAARKKPPFGIGQIGKSFRNEITPGNFIFRTREFE 260

Query: 210 -----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                F     T E       D+          D +++       E+ +     T D+  
Sbjct: 261 QMELEFFCEPGTDEEWHQYWIDYRKAWYVGLGIDPENLREYEHPKEKLSHYSKRTVDLEY 320

Query: 265 EKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F      E + ++ R      +    ++ S      F  A  +     +     G  
Sbjct: 321 RFGFAGGEWGELEGIANRTDYDLTVH---SQASGAKLDYFDPASKERWTPYVIEPSAGLT 377

Query: 323 RVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           R + A +  ++                       +AP K +++ +    ++   A E + 
Sbjct: 378 RSLMAFLIEAYHEDEAPNAKGGVDKRVVLKLDPRLAPVKAAVLPLSRKPELTGPASE-LA 436

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L  +  +V +DD G  +G ++   D +G P  +      V D  V ++ R +  +  +
Sbjct: 437 DGLRGLW-NVDYDDAGA-VGRRYRRQDEIGTPFCITYDFDSVEDHAVTVRERDSMEQVRI 494

Query: 430 SLEEVINYASHRF 442
            L++V  Y   R 
Sbjct: 495 PLDQVKPYLVERL 507


>gi|292654231|ref|YP_003534128.1| glycyl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291372518|gb|ADE04745.1| glycyl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 594

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/376 (10%), Positives = 104/376 (27%), Gaps = 17/376 (4%)

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +      V +  +     E     +R++  +      E ++             +  T  
Sbjct: 203 ISPRKSIVRTREFTQAELEHFIDPERDEADLSAVEDVEVLLYPATEQEADDGDYVETTIG 262

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           +             G          +    D+     +         Y         +  
Sbjct: 263 EAVDDGIIG-NAWLGYFLGIAQEWYETVGVDMDRFRFRQHLAGERAHYSSDCWDAESEVD 321

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
               E         ++     + G+      + + +           D+ +L        
Sbjct: 322 GDWIEIAGFSYRSDYDLSKHGEYGDDDFTVFQQYDEPKTVERAVVDPDMATLGPEFGAQA 381

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           A  A   +   E+  D+   ++       E   +           +   +   G+     
Sbjct: 382 ADVAEALETLAERDPDAFDADEVTLDVDGEEITV----DTDVANFAVETQTEAGEHITPH 437

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGII--------WPDSVAPFKISLINIKAHDQVCRDAC 365
           +     G  R V  ++  +++   +            SVAP  + +  + ++     D  
Sbjct: 438 VVEPSFGIDRTVYTLLAHAYETDEVDGEARSYLSLSPSVAPTNVGVFPLVSNVDGLVDLA 497

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS---DSKVEIKHRL 422
           + +   L   G  V +DD G  IG ++   D +G P  + +    +       V I+ R 
Sbjct: 498 DDVAEELRAAGFAVVYDDSG-SIGRRYRRQDEVGTPFCITIDRDGLEGDGADTVTIRERD 556

Query: 423 TGIREDMSLEEVINYA 438
           +G +  + +++++   
Sbjct: 557 SGKQVRLPVDDLVGTL 572



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 24  KLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQS 76
           +L  R G     S       G Y++ P G     NV    RE    + G +E+  PT+  
Sbjct: 12  ELAKRRGFFFGSSEAYGGVGGFYTYGPQGAALKSNVEEAWRERFAVQEGNLEIEAPTIMP 71

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKA 103
             ++  SG  D +   ++  A+  +  
Sbjct: 72  EPVFEASGHLDGFDDMLVECAECGESH 98


>gi|160880206|ref|YP_001559174.1| glycyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|160428872|gb|ABX42435.1| glycyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 456

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 71/440 (16%), Positives = 135/440 (30%), Gaps = 35/440 (7%)

Query: 30  GMIHQHS---KGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWV 81
           G I Q S    G+   + + PLG +  +N+    R    QNR  + E+    L +  +W 
Sbjct: 17  GFIFQGSEIYGGLANTWDYGPLGTRLKNNIKDAWRYYFIQNRDNSYELDSDILMNPRVWE 76

Query: 82  ESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQ-IQ 136
            SG   S+     +      R+    +     +++  D      + +Y            
Sbjct: 77  ASGHLSSFTDPLLDCKHCKTRHRADSLIQNYKKDLNVDTMTQLEMSNYIQEQKIPCPVCG 136

Query: 137 LKFRDELRPRFGVMRSREFLMKDA--YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
                ++R    +  ++  + +D+    +           N + V               
Sbjct: 137 ASNYTDIRQFNLMFATKRGVTEDSSSTIYLRPENAQGEYVNYLNVMRSMRAKLPFSIGQI 196

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSK--------DFMDFPIPSENTDFDDIISLN 246
            +A    I         +  +  E Q FC K         F D+ I        D   L 
Sbjct: 197 GKAFRNEITPGSFTFRTIEFEQMEYQTFCKKGSDDELYQYFKDYGISFFEYLGIDNNHLR 256

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
               +  A YA  +            E      R            ++S      F    
Sbjct: 257 FRDHEKLAHYAKAACDIEYLFPFGWGEINGTHNRTDFDLKRHQ---EFSKVNLEYFDENS 313

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA--PFKISLINIKAH-----DQ 359
            +     +     G  R++ A++  S   + I   DS         L  +K +       
Sbjct: 314 KEKIIPYIIESTYGLDRIILAILFESLVEEKINENDSRLVLKISKILSPVKVNVLPLIKN 373

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   ++Y  L K      +D+ G  IG ++   D +G P  V +  + +    + I+
Sbjct: 374 RHGEKATEVYQLLRKH-MMASYDESG-TIGKRYRRGDAIGTPYAVTIDDETLEKGLITIR 431

Query: 420 HRLTGIREDMSLEEVINYAS 439
            R T  ++ ++LE V+    
Sbjct: 432 DRDTMEQKVVALENVLEELR 451


>gi|222528609|ref|YP_002572491.1| histidyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
 gi|254782306|sp|B9MPF7|SYH_ANATD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|222455456|gb|ACM59718.1| histidyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
          Length = 421

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 64/419 (15%), Positives = 120/419 (28%), Gaps = 21/419 (5%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEM 93
           P G K            V    RE     G  E+  PT +  +L+        D   KEM
Sbjct: 6   PKGTKDVLPEESYMWQYVENKFREVCKLYGYQEVRFPTFEYTELFQRGVGDTTDIVQKEM 65

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
               D+  +++   P        +F  H  + R +P  FY I   FR E           
Sbjct: 66  YTFLDKGGRSITLRPEGTASTARLFIEHGFASRPMPQRFYYIISAFRYENTQGGRFREFH 125

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F +++  S     +    S    F + L + +     +                E+   
Sbjct: 126 QFGIENFGSSSPVTDAEVISLAYNFFTSLGLDNITVNINSIGCPVCRKEYVKNLKEYFSA 185

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                    C +     P+   +   +    +     +           H E +   L  
Sbjct: 186 NSQKLCHT-CHQRLDKNPMRILDCKEEGCKLITKDAPKPIDYLCDDCKSHFESVKTYLDS 244

Query: 274 NKR------VSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                       RG++     +F      S    A   G    +   Q+G   I  +   
Sbjct: 245 AMVSYKVDPFIVRGLDYYTKTVFEIVATVSDKELAICGGGRYDNLIEQIGGPSIAGIGFA 304

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             V       +      + +      + +    +       +I   L   G     ++MG
Sbjct: 305 IGVERLLMLLEQNGLLPARSQVP--RVFVATIGENGIKKAFEIARMLRFEGISTVVEEMG 362

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + SQ   AD +G    +I+G   +     ++++  T   E + +E +  Y   +   
Sbjct: 363 RSLKSQMKYADKIGCEFSIIIGDDEIEKGVCKVRNMKTSSEEIVEIENICEYLKEKLQK 421


>gi|219848361|ref|YP_002462794.1| glycyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
 gi|219542620|gb|ACL24358.1| glycyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
          Length = 539

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 75/528 (14%), Positives = 153/528 (28%), Gaps = 116/528 (21%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVN-AIIR-EEQNRTGAIEMSVPTLQSADL 79
           R G I   S      +G+Y + PLG +  +N+     R     R     +    L +  +
Sbjct: 15  RRGFIFPSSEIYGGLQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLV 74

Query: 80  WVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR---------- 126
           W  SG  +++     +      R     I+G        D+      +            
Sbjct: 75  WKYSGHEETFNDPLVDCRTCKMRWRADHIHGVCPNCGSRDLTEPRPFNMMFRTQIGPVAD 134

Query: 127 ----------------------------NLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
                                        LPF   Q+   FR+E+ PR  + R REF   
Sbjct: 135 SSSFAYLRPETAQGIFVNFANVLATTARKLPFGIAQVGKAFRNEITPRNFIFRVREFEQM 194

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-----SIPMRAESGPIGGDLSHEFIVL 213
           +   F + P   +  + +   + L  + ++G+         +  +        + + +  
Sbjct: 195 EIEYFVM-PGTDEEWHQRWLEARLAWWEQIGIPRSRITIYDVPPDELAHYSKRTFDLMYD 253

Query: 214 AD-TGETQVFCSKDFMDFPIPSE---------------------NTDFDDIISLNSIVEQ 251
               G  ++    +  D+ + S                         + D  S   +V  
Sbjct: 254 YPNIGVQEIEGIANRTDYDLGSHSKDQDQLNLTARVNRNEDSLARLTYFDQASGRHVVPY 313

Query: 252 WTAP--------YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              P         A   + + E+L   +P  K  +    +    F      S  +    +
Sbjct: 314 VIEPSAGVGRCMLAVMCEGYAEELTKPIPTEKLTAVG--DALQTFLKSVGRSEKIGGEAR 371

Query: 304 G-----------------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW---PDS 343
                              + +      G+  I   + +   ++   D            
Sbjct: 372 DAILARGEALQQALTERLPEVEQLLAMPGADQIEVGKKLRGQVQPLIDEHYRTVLRLKPR 431

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADLLGFPL 402
           +AP K ++  +K + +      + +  +L   G     +DD G  IG  +   D +G P 
Sbjct: 432 LAPIKAAVFPLKRNHEQLVTTAKAVRRQLQVGGEMRTVYDDTGA-IGKLYRRQDEIGTPF 490

Query: 403 QVIVGSKFVS-------DSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + V    +           V ++ R T  +E + + E+  Y   +  
Sbjct: 491 CITVDFDTIGQGKDPSLAGTVTVRDRDTMAQERVPISELEGYLREKLR 538


>gi|73662500|ref|YP_301281.1| glycyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123747875|sp|Q49Y08|SYG_STAS1 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|72495015|dbj|BAE18336.1| glycyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 463

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 65/444 (14%), Positives = 134/444 (30%), Gaps = 53/444 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN-----RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +NV     ++         G   +    L +   W  SG   ++   M+
Sbjct: 32  WDYGPLGVELKNNVKKAWWQKFITQSPYNVG---IDAAILMNPKTWEASGHLGNFNDPMI 88

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS-- 152
              D +          E+ M +           L F   +  +     + P  G      
Sbjct: 89  DNKD-SKIRYRADKIIEDYMLNEKGDENFVADGLSFDEMKRIIDEEGIVCPVSGTANWTD 147

Query: 153 -REFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRL-----------GLKSIP 194
            R+F +       +T + +   +        +FV+Y  +   +           G     
Sbjct: 148 IRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRTMRKKLPFGIGQIGKSFRN 207

Query: 195 MRAESGPIGGDLSHEFI---VLADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIV 249
                  I      E +        GE   +    K F    +   N   +     +   
Sbjct: 208 EITPGNFIFRTREFEQMELEFFCKPGEEIEWQNYWKTFASQWLKDLNLSEEATRLRDHDA 267

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---AD 306
           ++ +    AT+D+         P        GI     F    K+S      F+      
Sbjct: 268 DELSHYSNATTDI-----EYRFPFGWGELW-GIASRTDFDL-KKHSEHSGEDFQYHDQET 320

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-- 364
           G+ +        +GA RV  A +  ++D +G+               +  +         
Sbjct: 321 GEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDSRTVLHFHPALAPYKAAVLPLSK 380

Query: 365 -----CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  K++  L      + +D+  + IG ++   D +G P  +      + D KV ++
Sbjct: 381 KLSGDAIKVFEEL-SADFAIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDEKVTVR 438

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R T  +  M + E+ ++ + +  
Sbjct: 439 DRDTMEQVRMPITELKSFLAEKVK 462


>gi|313676633|ref|YP_004054629.1| glycyl-tRNA synthetase [Marivirga tractuosa DSM 4126]
 gi|312943331|gb|ADR22521.1| glycyl-tRNA synthetase [Marivirga tractuosa DSM 4126]
          Length = 492

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 64/447 (14%), Positives = 125/447 (27%), Gaps = 53/447 (11%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRL 96
           +Y + P G +   N+  +      R     +          D W  SG  +S+   M+  
Sbjct: 39  VYDYGPYGAELKKNIKELWWNTMTRFNDDIVGLDSAIFMHPDTWKASGHIESFNDPMIDN 98

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE-----------LRP 145
            D   +        E+          +    L     Q+      E             P
Sbjct: 99  KDSKKRYRADVLLEEKAAEYENSGDQEKADTLLKKTGQLLEAEDLEAVRALIIAEDIKCP 158

Query: 146 RFGVMRSREFLMKDAY--------------SFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
             G     E    +                 +           N + V            
Sbjct: 159 ISGTANWTEVRQFNLMFSTQMGSVSDGSGKIYLRPETAQGIFVNFLNVQKTARMKVPFGI 218

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVF--------CSKDFMDFPIPSENTDFDDII 243
           +   +A    I        +   +  E Q F          + + D  +           
Sbjct: 219 AQIGKAFRNEIVARQFIFRMREFEQMEMQFFVRPGEEMEWYEKWRDMRLKWHKAIGIASE 278

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L     +  A YA  +     K      E + + +R            + S      F 
Sbjct: 279 DLRLHEHEKLAHYANAAVDVEYKFPFGFKEVEGIHSRTDFDLKSHQ---EVSKKKLQYFD 335

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIE------------SSHDGKGIIWPDSVAPFKISL 351
              GK++   +    +G  R+   +                     +    ++AP K ++
Sbjct: 336 PEIGKNYIPYVVETSVGCDRLFLMLFCSAFKNEEVGEGDKIKTRTYLKLHPALAPVKAAI 395

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +   D    +  ++IY  L     +V +++    IG ++   DL+G P  + V  + +
Sbjct: 396 LPLTKKD-GLPEKGQEIYKSLKGA-FNVVYEE-AASIGKRYTRQDLIGTPFCIAVDHQTL 452

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYA 438
            D  V I+HR +  +E M + E+ +Y 
Sbjct: 453 EDETVTIRHRDSTEQERMPVSELESYI 479


>gi|282881885|ref|ZP_06290536.1| histidine--tRNA ligase [Peptoniphilus lacrimalis 315-B]
 gi|300813282|ref|ZP_07093639.1| histidine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|281298294|gb|EFA90739.1| histidine--tRNA ligase [Peptoniphilus lacrimalis 315-B]
 gi|300512607|gb|EFK39750.1| histidine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 435

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/443 (13%), Positives = 133/443 (30%), Gaps = 56/443 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP  Q   + +  IIR+   R G + +  P ++ +++ +  G  ++  +     
Sbjct: 10  PGFMELLPKEQILFNQMRDIIRKNFERAGFLPIDTPVIEKSEVLLAKGGGETEKQIYRFT 69

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               D ++ +  T       +      S  + PF  Y I   +R E   +    R REF 
Sbjct: 70  KGDTDMSLRFDLTVPLARYTV---EHFSELSFPFKRYAIGKVYRGEKAQKG---RFREFY 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRI-------------------------------- 184
             D  +         +      V Y                                   
Sbjct: 124 QCDIDTIGNGELSIANDAEFPVVIYHTFKDLGFSDFTIHLNNRRILKGFFAWLGVSDSQN 183

Query: 185 -------FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
                    ++G +++    E   I  +   + +   +   T     +   D  I  E  
Sbjct: 184 ALRAVDKIEKIGPENVLKELEESGIDREKGKKILEFIEIKGTNDEIIQALKDLNIDEETF 243

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +      L+ + E  +   A   D  N ++   +          +    +  +    S+ 
Sbjct: 244 NQ----GLDEMSELISCIKAYNIDEKNYRIDLKIARGLDYYTGTVYETTLDDYPKIGSVC 299

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
               +           +   GI         +    +   II  +  +   I ++ +   
Sbjct: 300 SGGRYDNLASYYTEKTLPGVGISIGLSR---LFYQLEQAKIISAEDKSLIDIIILPM--- 353

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                    K+ A+L +    V       ++G +F  AD +  P  +++G   V +    
Sbjct: 354 -DGFIHEGIKLLAKLREKNVKVTIYSEDAKLGKKFKYADQIKVPYAIVLGENEVKNGLYS 412

Query: 418 IKHRLTGIREDMSLEEVINYASH 440
           +++  TG +E++   +++   S 
Sbjct: 413 LRNMATGEQEEVDFNKLVEKFSK 435


>gi|227874495|ref|ZP_03992668.1| glycine--tRNA ligase [Oribacterium sinus F0268]
 gi|227839661|gb|EEJ50118.1| glycine--tRNA ligase [Oribacterium sinus F0268]
          Length = 428

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 61/438 (13%), Positives = 137/438 (31%), Gaps = 52/438 (11%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
           LG +  +N+     ++       E      +    L + + WV SG    +   ++   +
Sbjct: 3   LGVELKNNIKKAWWKKF----VQESKYNVGIDCAILMNPETWVASGHLAGFSDPLMDCKE 58

Query: 99  RND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
             +  +A        E         + ++       +    +       +      R+F 
Sbjct: 59  CRERFRADKVIEDFCESHNIPLEGSVDAWSKEEMENFISSHEVPCPSCGKHNFTPIRQFN 118

Query: 157 MKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           +       +T +     Y        +FV++  +      K     A+ G    +     
Sbjct: 119 LMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRSSRKKLPFGIAQIGKSFRNEITPG 178

Query: 209 --------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                         EF    DT        KD+    + +     + + + +    + + 
Sbjct: 179 NFTFRTREFEQMELEFFCKPDTDLEWFHYWKDYCQKWLLNLGMKPEMLRARDHEAAELS- 237

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
            Y+  +            E   ++ R            + S      F     + +   +
Sbjct: 238 FYSKATTDLEFLFPFGWGELWGIADRTNYDLSRHE---EVSGQDMKYFDDEINEHYLPYV 294

Query: 315 GSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
               +GA RV  A + +++D            + +  ++AP KI ++ +        +  
Sbjct: 295 VEPSLGADRVTLAFLCAAYDVEELEGGDERTVLRFHPALAPIKIGVLPLAKK---LGEGA 351

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           EKI+  LSK      +DD G  IG ++   D +G P  V    +   D  V ++ R +  
Sbjct: 352 EKIHEELSKYWM-CEYDDRG-NIGKRYRRQDEIGTPYCVTYDFQSEEDHAVTVRERDSME 409

Query: 426 REDMSLEEVINYASHRFS 443
           +  + + E+  Y + + +
Sbjct: 410 QVRIPISELQAYFAEKLA 427


>gi|46446335|ref|YP_007700.1| putative threonine-tRNA ligase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399976|emb|CAF23425.1| putative threonine-tRNA ligase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 553

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/431 (12%), Positives = 123/431 (28%), Gaps = 44/431 (10%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVP 72
             +D       L L +    + +     W P G   L  +   + +E ++ G    ++ P
Sbjct: 147 KKKDHRQLGSDLNLFS-FPEKLTALECVWHPKGNLLLMLLKEWVTKEFSKIGKWEPVNTP 205

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            + ++        +  +  + L   +   +  ++ P+       +F+   K   +LP  F
Sbjct: 206 YVVNS-------HFFKFNVDYLPTVEMGTEEYVFSPSPLIQHHYLFKRKKKDSSDLPIHF 258

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS 192
           ++   K+     P    + +      D  +   + E     +        +I    G ++
Sbjct: 259 FEWAKKYVLSTHPLKEGLFNAVGWSGDFSTIFSSDEQLNQEFISSLQFIEQIIRIFGFEA 318

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                 S         E   +    +    C+        P ++  F+        +E  
Sbjct: 319 RWCLVTSRQKSFKFRQEKAAIDRIEKILSLCT-----LSYPLQDEHFESDCLEGPRLELR 373

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A              D +     +SA  +    I Y     +                +
Sbjct: 374 VA--------------DEIGREWVISALTLIS--IHYLKKDKTEKQENEITIPFVIVRQI 417

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
                     R++A +IE       +                    +       +I  R 
Sbjct: 418 WE-----SLDRLIALLIERFEGSFPLWLAPEQVRILAVG-------EGSLSYARQIETRC 465

Query: 373 SKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMS 430
              G  V  D     ++G +  +A+    P  +I+G + +  + +  +     G  E + 
Sbjct: 466 RSQGLRVGVDFKKSTKLGEKIHLAEKEKVPYLLIIGEQEIKRNAITFRSVEKPGKSESIR 525

Query: 431 LEEVINYASHR 441
           LEE +     +
Sbjct: 526 LEEFLEQIRQK 536


>gi|260903902|ref|ZP_05912224.1| glycyl-tRNA synthetase [Brevibacterium linens BL2]
          Length = 459

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 71/481 (14%), Positives = 148/481 (30%), Gaps = 63/481 (13%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHS---KGI---YSWLPLGQKALDNVN 54
           M +SK           DA IA   L  R G + Q      G    + + PLG +  DN+ 
Sbjct: 1   MAQSKL----------DAVIA---LAKRRGFVFQAGEIYGGSRSAWDYGPLGVELKDNIK 47

Query: 55  A-----IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYG 107
           A      +R  ++  G   +    +    +W  SG   ++   ++      +  +     
Sbjct: 48  AQWWQTFVRGREDVVG---LDSSVILPKRVWEASGHVATFVDPLVECLSCHKRHREDHLV 104

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-----------RFGVMRSREFL 156
             +E   +    + +      P    + Q     E                G+   R   
Sbjct: 105 EAYEAKHSKAPENGMADIVC-PDCGNRGQWTEPQEFSGLVKTFLGPVESEAGLNYLRPET 163

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +  +        +        +  +    R  +        +          F V  D 
Sbjct: 164 AQGIFVNFNNVVTAARKKPPFGIGQIGKAFRNEITPGNFIFRTREFEQMELEYF-VRPDE 222

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            +       +             D++  L+   +      + T DV     F      + 
Sbjct: 223 ADDYYREWVEACWNWFLDLGISEDNVRRLDVPEDDRAHYSSGTIDVEYRFGFQGSEWGEL 282

Query: 277 VSARGIEVGHIFYFGTKY-SLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           +   G+     +  GT   +      +     G+     +     G  R + A +  ++ 
Sbjct: 283 M---GVANRTDYDLGTHTEASGAKLQYFDQASGERFTPYVIEPSFGLTRSMMAFLIDAYT 339

Query: 335 GKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                                 +AP K +++ + + ++      +++ ARL K   ++ +
Sbjct: 340 EDEAPNTKGGVDKRIVLKLDPRLAPVKAAVLPL-SRNEKLSPQAKELAARLRKRW-NIDF 397

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD G  IG ++   D +G PL +      + D+ V I+ R    +E +S+++V NY +  
Sbjct: 398 DDAGA-IGRRYRRQDEVGTPLCITFDFDSLDDNAVTIRKRDDMSQERVSIDQVENYLAEH 456

Query: 442 F 442
            
Sbjct: 457 L 457


>gi|315658159|ref|ZP_07911031.1| glycyl-tRNA synthetase beta subunit [Staphylococcus lugdunensis
           M23590]
 gi|315496488|gb|EFU84811.1| glycyl-tRNA synthetase beta subunit [Staphylococcus lugdunensis
           M23590]
          Length = 475

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 61/447 (13%), Positives = 141/447 (31%), Gaps = 59/447 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN-----RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +NV     ++         G   +    L +   W  SG   ++   M+
Sbjct: 44  WDYGPLGVELKNNVKKAWWQKFITQSPYNVG---IDAAILMNPKTWEASGHLGNFNDPMI 100

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS-- 152
              D +          ++ M             L F   +  +     + P  G      
Sbjct: 101 DNKD-SKIRYRADKLIDDYMQQQKGDENFIADGLSFDEMKRIIDEEGIVCPVSGTANWTD 159

Query: 153 -REFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFH-----------RLGLKSIP 194
            R+F +       +T + +   +        +FV+Y  +             ++G     
Sbjct: 160 IRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRN 219

Query: 195 MRAESGPIGGDLSHEFIV---LADTGETQVFCSKDFMDFPIPSEN--TDFDDIISLNSIV 249
                  I      E +        GE ++     +  F           ++ + L    
Sbjct: 220 EITPGNFIFRTREFEQMELEFFCKPGE-EIEWQNYWKTFASQWLKDLNISEENMRLRDHD 278

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP--MSATFKG-AD 306
           E   + Y+  +     K      E   +++R       F    ++S        +     
Sbjct: 279 EDELSHYSNATTDIEYKFPFGWGELWGIASR-----TDFDL-KQHSEHSGEDFKYHDPET 332

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDG----------KGIIWPDSVAPFKISLINIKA 356
            + +        +GA RV  A +  ++D             + +  ++AP+K +++ +  
Sbjct: 333 NEKYIPYCIEPSLGADRVTLAFLCDAYDQEGVEGSKDARTVLHFHPALAPYKAAVLPLSK 392

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     KI+  LS     + +D+  + IG ++   D +G P  +      + D++V
Sbjct: 393 K---LSGEAIKIFEDLSSK-FAIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQV 447

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R +  +  M + E+  + + +  
Sbjct: 448 TVRDRDSMDQVRMPIAELEAFLTEKVK 474


>gi|212640589|ref|YP_002317109.1| glycyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
 gi|212562069|gb|ACJ35124.1| Glycyl-tRNA synthetase (class II) [Anoxybacillus flavithermus WK1]
          Length = 460

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 54/437 (12%), Positives = 129/437 (29%), Gaps = 42/437 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     + +    L +   W  SG   ++   M+   
Sbjct: 32  WDYGPLGTELKNNIKRAWWKKFVQQSPYNVGLDAAILMNPRTWEASGHLGNFNDPMIDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +          +        +             +                R+F +
Sbjct: 92  QCKARHRADKLIEGALEAKGIEMVVDGLPFEKMEQLIQEHDIACPDCGSRDFTNIRQFNL 151

Query: 158 KDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--- 208
                  +T   +   Y        +FV++  +   +  K     A+ G    +      
Sbjct: 152 MFKTFQGVTESSANEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIAQIGKSFRNEITPGN 211

Query: 209 -------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                        EF              + + +  + S      + I L    E   + 
Sbjct: 212 FTFRTREFEQMELEFFCKPGEELQWFDYWRQYCEQWLLSLG-MKRENIRLRDHSEDELSH 270

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y+  +     K      E   +++R            +YS            +       
Sbjct: 271 YSNATTDIEYKFPFGWGELWGIASRTDYDLRRH---MEYSGEDFHYLDQETNERFIPYCI 327

Query: 316 SYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACE 366
              +GA RV  A +  +++ +          +    ++AP+K +++ +        +   
Sbjct: 328 EPSLGADRVTLAFMIDAYEEEQLADGTTRTVMHLHPALAPYKAAVLPLSKK---LSEGAR 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            I+ +LS+    V +D+ G  IG ++   D +G P  +        D  V ++ R T  +
Sbjct: 385 AIFEQLSQH-FMVDYDESG-SIGKRYRRQDEIGTPFCITYDFDSEQDQMVTVRDRDTMEQ 442

Query: 427 EDMSLEEVINYASHRFS 443
             + + E+ ++   +  
Sbjct: 443 TRIPIAELKSFLEEKIQ 459


>gi|126700355|ref|YP_001089252.1| putative histidyl-tRNA synthetase [Clostridium difficile 630]
 gi|254976335|ref|ZP_05272807.1| putative histidyl-tRNA synthetase [Clostridium difficile QCD-66c26]
 gi|255093720|ref|ZP_05323198.1| putative histidyl-tRNA synthetase [Clostridium difficile CIP
           107932]
 gi|255101911|ref|ZP_05330888.1| putative histidyl-tRNA synthetase [Clostridium difficile QCD-63q42]
 gi|255307780|ref|ZP_05351951.1| putative histidyl-tRNA synthetase [Clostridium difficile ATCC
           43255]
 gi|255315472|ref|ZP_05357055.1| putative histidyl-tRNA synthetase [Clostridium difficile QCD-76w55]
 gi|255518135|ref|ZP_05385811.1| putative histidyl-tRNA synthetase [Clostridium difficile QCD-97b34]
 gi|255651251|ref|ZP_05398153.1| putative histidyl-tRNA synthetase [Clostridium difficile QCD-37x79]
 gi|255656727|ref|ZP_05402136.1| putative histidyl-tRNA synthetase [Clostridium difficile QCD-23m63]
 gi|260684315|ref|YP_003215600.1| putative histidyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260687974|ref|YP_003219108.1| putative histidyl-tRNA synthetase [Clostridium difficile R20291]
 gi|296452446|ref|ZP_06894147.1| histidine--tRNA ligase [Clostridium difficile NAP08]
 gi|296877795|ref|ZP_06901821.1| histidine--tRNA ligase [Clostridium difficile NAP07]
 gi|306521095|ref|ZP_07407442.1| histidyl-tRNA synthetase [Clostridium difficile QCD-32g58]
 gi|122973671|sp|Q183H5|SYH_CLOD6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|115251792|emb|CAJ69627.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
           [Clostridium difficile]
 gi|260210478|emb|CBA64951.1| putative histidyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260213991|emb|CBE06103.1| putative histidyl-tRNA synthetase [Clostridium difficile R20291]
 gi|296258776|gb|EFH05670.1| histidine--tRNA ligase [Clostridium difficile NAP08]
 gi|296431246|gb|EFH17067.1| histidine--tRNA ligase [Clostridium difficile NAP07]
          Length = 420

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/407 (14%), Positives = 116/407 (28%), Gaps = 20/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE     G  EM  P  +  +L+  S     D   KEM    D+ D+ +   
Sbjct: 20  WRYVENKFREICALYGYEEMVTPIFEHTELFKRSVGDTTDIVQKEMYSFKDKGDREITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  +       P   + +   FR E        R R+F      +     
Sbjct: 80  PEGTAGVVRAFIENKLYADTQPTKLFYVTPCFRYERPQAG---RQRQFHQFGIEALGSDT 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCSK 225
                         ++ F+ +GL  + +   S   P+     +  +      +  + C  
Sbjct: 137 PSMDAEI---IALAVQFFNEVGLNDLVVSINSVGCPVCRKEYNALLKEYLDSKADILCDT 193

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQW---TAPYAATSDVHNEKLFDSLPENKR--VSAR 280
                             +    ++               H +KL + L E     V  +
Sbjct: 194 CNERREKNPMRVIDCKNPTCKENIKDIPFIADHLCDDCKSHFDKLQEYLKEMNINFVIDK 253

Query: 281 GIEVGHIFYFGTKY-----SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            I  G  +Y  T +      +   +T  G    D  V+      G   +   +       
Sbjct: 254 TIVRGLDYYRKTAFEIISNDIGAQSTVCGGGRYDGLVEQLGGPKGISGIGFGLGIERLLL 313

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   + + I I    +       K+   L +       D +   + +QF  +
Sbjct: 314 TLEGNGIEIENPQSTDIFIVTIGEEANTRSFKLLKDLRQNHISADKDHIERSVKAQFKYS 373

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D +     +++G   + +    +K+  T  +  + L  ++     + 
Sbjct: 374 DKINSKFTIVIGDDELKNDTATLKNMKTSEQTTVKLSTLVEELKQKL 420


>gi|138897004|ref|YP_001127457.1| glycyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|166227934|sp|A4ITQ8|SYG_GEOTN RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|134268517|gb|ABO68712.1| Glycyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 466

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 55/437 (12%), Positives = 129/437 (29%), Gaps = 42/437 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     + +    L +   W  SG   ++   M+   
Sbjct: 38  WDYGPLGVELKNNIKRAWWKKFVQESPHNVGLDAAILMNPKTWEASGHLGNFNDPMVDCK 97

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             +                R+F +
Sbjct: 98  QCKARHRADKLIEQALEEKGIEMVVDGLPLAKMEELIREYDIACPECGSRDFTNVRQFNL 157

Query: 158 KDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRAESG 200
                  +T   +   Y                   M         ++G           
Sbjct: 158 MFKTYQGVTESSANEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIAQIGKSFRNEITPGN 217

Query: 201 PIGGDLSHEFI---VLADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                   E +        GE   +    K F    + S   + + I   +   E+ +  
Sbjct: 218 FTFRTREFEQMELEFFCKPGEELKWFDYWKQFCKEWLLSLGMNEEHIRLRDHTKEELSHY 277

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             AT+D+   +      E   +++R            ++S            + +     
Sbjct: 278 SNATTDI-EYQFPFGWGELWGIASRTDYDLKQH---MEHSGEDFHYLDQETNERYIPYCI 333

Query: 316 SYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACE 366
              +GA RV  A +  ++D +          +    ++AP+K +++ +        D   
Sbjct: 334 EPSLGADRVTLAFMIDAYDEEELEDGTTRTVMHLHPALAPYKAAVLPLSKK---LGDGAR 390

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +IY  L      V +D+ G  IG ++   D +G P  +    +   D +V ++ R T  +
Sbjct: 391 RIYEEL-AKHFMVDYDETG-SIGKRYRRQDEIGTPFCITYDFESEQDGQVTVRDRDTMEQ 448

Query: 427 EDMSLEEVINYASHRFS 443
             + + E+  +   + +
Sbjct: 449 VRLPIGELKAFLDKKIA 465


>gi|189189606|ref|XP_001931142.1| prolyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972748|gb|EDU40247.1| prolyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 488

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 67/189 (35%), Positives = 113/189 (59%), Gaps = 2/189 (1%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
            +  + +  +I +  N  GA ++S+ ++ +  LW +SGRY S   E+LR+ DR +   + 
Sbjct: 7   LRVQNKLEGLIDKHMNSIGASKVSLSSITTEALWRQSGRY-SANSELLRIKDRRETGFLL 65

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            PTHEE +T +  S + SY++LP   YQI  K+RDE RPR G++R++EF+MKD Y+FD +
Sbjct: 66  SPTHEEEITALVASMVHSYKDLPLRLYQIGRKYRDERRPRGGLLRAKEFMMKDLYTFDSS 125

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P+ +  +Y  +  +Y  +F+ L L  +   A+SG +GG LSHE+   +  GE  +F  + 
Sbjct: 126 PKAALETYESVRDAYNNLFNELKLPYLVADADSGNMGGKLSHEYHFASPKGEDYIFSCQS 185

Query: 227 FMDFPIPSE 235
             ++ +  E
Sbjct: 186 C-EYVVNEE 193



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 13/191 (6%)

Query: 253 TAPYAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATF-KGADGK 308
            AP   + D+   K  D  P     K    + IEVGH F+ GT+YS+P++A         
Sbjct: 291 NAPSTCSIDITLTKPGDPCPRCATGKLNIQKAIEVGHTFHLGTRYSVPLNAVIALRDQNL 350

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              V MG +GIG  R++ AV     D +G+ WP  +AP++  +++    ++   +   ++
Sbjct: 351 SSPVHMGCHGIGVSRIIGAVASLLSDARGLNWPRVIAPYEAIVLSDPKTEE---EDTTEV 407

Query: 369 YARLS----KVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           Y  L         D+  DD  G+ +G +   ADL+G+P+ V++G +   D KVEI+ R  
Sbjct: 408 YDALRGEERNPDIDLVLDDRAGKSLGWKLKDADLIGYPVVVVLG-RSWKDKKVEIQCRRL 466

Query: 424 GIREDMSLEEV 434
           G+++D+ L+E+
Sbjct: 467 GVKKDVDLKEL 477


>gi|54307959|ref|YP_128979.1| histidyl-tRNA synthetase [Photobacterium profundum SS9]
 gi|50403647|sp|P62373|SYH_PHOPR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46912385|emb|CAG19177.1| putative histidyl-tRNA synthetase [Photobacterium profundum SS9]
          Length = 422

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 60/411 (14%), Positives = 120/411 (29%), Gaps = 14/411 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V   I++  +  G  E+ +P ++S  L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSALWQKVEGTIKQVVSAYGYNEIRMPIVESTHLFKRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF---RDELRPRFGVMRSREFLM 157
             ++   P            +   Y      +Y   +       + R R       E   
Sbjct: 75  GDSLTLRPEGTAGCVRAGIQNGLLYNQEQRLWYIGPMFRYERPQKGRYRQFHQVGVEVFG 134

Query: 158 KDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            +    D           +            + +G            I     H  ++  
Sbjct: 135 LNGPDVDAELIMMTARLWRELGINQHVRLELNSIGSLDARATYREALIAFLEQHLEVLDE 194

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDSLPE 273
           D            +D   P+      D   L+  ++    A +A   ++ +    +    
Sbjct: 195 DCKRRMHTNPLRVLDTKNPAVQEILVDAPKLSEYLDDDSKAHFAGLCELLDAAGIEYQVN 254

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            + V         +F +    +  + A      G  +   +   G  A   V   +    
Sbjct: 255 ERLVRGLDYYNRTVFEW---ITESLGAQGTVCGGGRYDGLVEQLGGKATPAVGFAMGVER 311

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGSQ 391
               +   +     +     +    +    A  K+  +L +   G  V     G     Q
Sbjct: 312 LVLLMETLELADVRRSVDAYVVTVGEGTMMAGMKLAEKLRENVPGLRVMNHFGGGNFKKQ 371

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           F  AD +G  + +++G   ++D+ V +K    G +  M+ +EV    +   
Sbjct: 372 FKRADNVGAAIALVLGENEIADNTVVVKDLRGGEQTTMAQDEVTAKLAELI 422


>gi|229543723|ref|ZP_04432783.1| histidyl-tRNA synthetase [Bacillus coagulans 36D1]
 gi|229328143|gb|EEN93818.1| histidyl-tRNA synthetase [Bacillus coagulans 36D1]
          Length = 427

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 56/403 (13%), Positives = 113/403 (28%), Gaps = 14/403 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            + +    ++        E+  P  +  +L+ +      D   KEM    DR  +++   
Sbjct: 20  WNYIENTAKKICENYQYREIRTPIFEYTELFQKGVGDTTDIVQKEMYTFDDRGGRSLTLR 79

Query: 108 PTHEEVMTDIFR-SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   F    +      P   Y     FR E        +  +F ++   S    
Sbjct: 80  PEGTAPVVRSFIGHKMFGNTVQPVKLYYNGPMFRYERPQAGRFRQFVQFGVEALGSE--D 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-EFIVLADTGETQVFCSK 225
           P             Y ++  +     I    +                   GE    C K
Sbjct: 138 PAIDAEVIALAMDIYKQLGLKNVKLVINSLGDKESRLRHREALIDHFKPHIGEFCADCQK 197

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--------ENKRV 277
                P+   +   D    L              S  + +K+   L         +   V
Sbjct: 198 RLEQNPLRILDCKKDHDHPLMKTAPSILDYLNDASKAYFDKVLQFLGTLGIPYEIDPGLV 257

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                 V   F   +      + T     G+ + +     G     +  A+         
Sbjct: 258 RGLDYYVHTCFEIMSNAEGFGAITTLCGGGRYNGLVEEMGGPETPGIGFALSIERLLAAL 317

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                 +     +   + A  +  + A  K+   L   G     D +G ++ +QF  AD 
Sbjct: 318 DAEGIELPVGHRTDCYVVAIGEETKPAAFKLLQALRSAGFSADQDYLGRKVKAQFKAADR 377

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +      ++G + +   K  +++  TG ++++ LE  I     
Sbjct: 378 VKAAFVAVIGEEELRAGKASVRNMATGEQKELPLEGFITAFKD 420


>gi|261420842|ref|YP_003254524.1| glycyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|319768511|ref|YP_004134012.1| glycyl-tRNA synthetase [Geobacillus sp. Y412MC52]
 gi|261377299|gb|ACX80042.1| glycyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|317113377|gb|ADU95869.1| glycyl-tRNA synthetase [Geobacillus sp. Y412MC52]
          Length = 460

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 60/436 (13%), Positives = 134/436 (30%), Gaps = 42/436 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     + +    L +   W  SG   ++   M+   
Sbjct: 32  WDYGPLGVELKNNIKRAWWKKFVQESPYNVGLDAAILMNPRTWEASGHLGNFNDPMVDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             +                R+F +
Sbjct: 92  QCKARHRADKLIEKALEEKGIEMIVDGLPLAKMDELIKEYDIACPECGSRDFTNVRQFNL 151

Query: 158 KDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--- 208
                  +T   +   Y        +FV++  +   +  K     A+ G    +      
Sbjct: 152 MFKTYQGVTESSANEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIAQIGKSFRNEITPGN 211

Query: 209 -------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                        EF          +   K F    + S     D+I   +   E+ +  
Sbjct: 212 FTFRTREFEQMELEFFCKPGEELQWLEYWKQFCKEWLLSLGMKEDNIRLRDHAKEELSHY 271

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             AT+D+     F    E   +++R            +YS            + +     
Sbjct: 272 SNATTDIEYHFPF-GWGELWGIASRTDYDLKRH---MEYSGEDFHYLDQETNERYIPYCI 327

Query: 316 SYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACE 366
              +GA RV  A +  ++D +          +    ++AP+K +++ +        D   
Sbjct: 328 EPSLGADRVTLAFMIDAYDEEELEDGTTRTVMHLHPALAPYKAAVLPLSKK---LADGAR 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +IY  L      V +D+ G  IG ++   D +G P  +    +   D +V ++ R T  +
Sbjct: 385 RIYEEL-AKHFMVDYDETG-SIGKRYRRQDEIGTPFCITYDFESEQDGQVTVRDRDTMEQ 442

Query: 427 EDMSLEEVINYASHRF 442
             + + E+  +   + 
Sbjct: 443 VRLPIGELKAFLEEKI 458


>gi|154304091|ref|XP_001552451.1| hypothetical protein BC1G_09681 [Botryotinia fuckeliana B05.10]
 gi|150854316|gb|EDN29508.1| hypothetical protein BC1G_09681 [Botryotinia fuckeliana B05.10]
          Length = 426

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 25/198 (12%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG------------------ 307
            +     E      + IE+GH F+ GT+YS PM AT     G                  
Sbjct: 232 DVCPKCQEPTLKVEKAIELGHTFHLGTRYSKPMEATVTVPSGLVGGNLKAGENEPQQGRN 291

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                 ++MG +GIG  R+V AV E+  D KG+ WP  +APF+I ++  K  D+      
Sbjct: 292 DQIQVPMEMGCHGIGVTRMVGAVAETLADEKGLNWPRVMAPFEIVVVPGKGLDED----A 347

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            +I+  LS    D   DD    IG +   ADL+G+P+ V++G K+  +   E++ R   +
Sbjct: 348 LQIFDTLSAAAMDPVVDDREVSIGWKMKDADLIGYPVIVLLGRKW-KEGLCEVQCRRLDV 406

Query: 426 REDMSLEEVINYASHRFS 443
           +ED+ +E++ N+     S
Sbjct: 407 KEDIRVEDLKNFVGKLLS 424



 Score = 38.6 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 34/79 (43%)

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKD Y+FD     +  +Y  +  +Y  +F  L +  +   A+SG IGGDLSHEF      
Sbjct: 1   MKDLYTFDYNSTSALSTYEDVRKAYHNLFDELKIPYLVAEADSGDIGGDLSHEFHFPTKI 60

Query: 217 GETQVFCSKDFMDFPIPSE 235
           GE  +              
Sbjct: 61  GEDNIISCSKCNYVANEEL 79


>gi|268567756|ref|XP_002647865.1| Hypothetical protein CBG23664 [Caenorhabditis briggsae]
 gi|187040879|emb|CAP20462.1| hypothetical protein CBG_23664 [Caenorhabditis briggsae AF16]
          Length = 265

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 66/164 (40%), Positives = 98/164 (59%), Gaps = 1/164 (0%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           H++++  G I   +KG YS LPLGQ+ +D +  I+  E   +GA+++ +P + +  LW  
Sbjct: 27  HRMLIENGFILPTAKGFYSLLPLGQRVIDKLCRILDSEFQNSGAMKVGMPIVGTKQLWDR 86

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRD 141
           + R+++ G EML+  DR    +   PT EE+ TD+           LP   YQI  KFRD
Sbjct: 87  TRRWEAMGSEMLKFEDRQKAQLCLQPTAEEMCTDLIAQLSPLKKSQLPVMLYQIGEKFRD 146

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
           E+ PRFG+MR+R+FLMKD YSF L  E S+ +Y+ +   Y RIF
Sbjct: 147 EMNPRFGLMRARQFLMKDMYSFALDSESSQKTYHNISNVYDRIF 190


>gi|300812622|ref|ZP_07093035.1| histidine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496403|gb|EFK31512.1| histidine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 428

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 62/424 (14%), Positives = 129/424 (30%), Gaps = 20/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP      + V    R+   R    E+  P+ ++ +L+  S     D   KEM  
Sbjct: 8   GTVDILPETSGQWEKVEQTARDLFKRANYHEIRTPSFENYELFSRSSGETSDVVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +   +  +         PF  Y I   +R E        R R
Sbjct: 68  FEDKGGRHIALRPEGTAGVVRAYVENKIYGPDYVKPFNVYYIAAMYRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSY---------NKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF      S                  +Y    + LG   +        +  
Sbjct: 125 EFHQIGVESFGSNGYLSDVETILLGHDLLAELGVKNYELHINTLGDSEVRQAYHDALVDY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               +  +  D+           +D     +     +   +   +++ +           
Sbjct: 185 FTPVKDQLSEDSQRRLGKNPLRILDSKAEEDQQFLPEAPKIRDYLDEESKENFNKILASL 244

Query: 265 EKLF-DSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           +KL    + ++  V       G IF F     +L  S +     G+ +++     G    
Sbjct: 245 DKLGVKYVIDDDLVRGLDYYTGVIFEFMVDDPTLWASPSTVLGGGRYNHLVEEFSGPETP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E             +   +     I    +       ++  +L  +G    +D
Sbjct: 305 AVGFGIGEERLMLVLSKQNPEMFEDQGIDFFITNIGEGTDIKAVEVARQLRSLGFSAQYD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY--ASH 440
              +++ +QF  AD +G    V +G+K +++ K+ +K    G +  +   ++ +      
Sbjct: 365 VDQKKLKAQFRKADRVGARYVVTLGAKELAEGKLTVKRLSDGQQFSLEFTDLEDKANLLS 424

Query: 441 RFSN 444
           +   
Sbjct: 425 KIEK 428


>gi|290960578|ref|YP_003491760.1| glycyl-tRNA synthetase [Streptomyces scabiei 87.22]
 gi|260650104|emb|CBG73220.1| glycyl-tRNA synthetase [Streptomyces scabiei 87.22]
          Length = 460

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/433 (13%), Positives = 133/433 (30%), Gaps = 38/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    + + ++WV SG   ++   +    
Sbjct: 33  WDYGPLGVELKENIKRQWWRYMVTSREDVVGIDSSVILAPEVWVASGHVATFSDPL---T 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
           +       +   H E   +  +  +     +         K +  E +   G++ +    
Sbjct: 90  ECTSCHKRFRADHLEEAYEAKKGRLPENGLVDINCPNCGTKGQFTEPKQFSGLLSTHLGP 149

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG---- 204
            +D  S       +       F        R         G            I      
Sbjct: 150 TQDTGSVAYLRPETAQGIFTNFAQVQTTSRRKPPFGIAQVGKSFRNEITPGNFIFRTREF 209

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             +  EF V     E                     +++   +   E+ +     T+D+ 
Sbjct: 210 EQMEMEFFVKPGEDEKWQEYWMQERWNWYTGLGLREENMRWYDHPKEKLSHYSKRTADIE 269

Query: 264 NEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               F      E + V+ R     +     +K S    + +     + +   +     G 
Sbjct: 270 YRFQFGGNEWGELEGVANRTDYDLNAH---SKASGQDLSYYDQESSERYTPYVIEPAAGV 326

Query: 322 MRVVAAVIESSHDGKGII------WPDSVAPFKISLINIK------AHDQVCRDACEKIY 369
            R + A +  ++               +V      +  +K      + +       + + 
Sbjct: 327 GRTLLAFLLDAYTEDEAPNAKGKLEKRAVLRLDHRIAPVKVAVLPLSRNPELSPKAKGLA 386

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R +  +E +
Sbjct: 387 AALRQNW-NIDFDDAGA-IGRRYRRQDEIGTPYCVTVDFDTLDDNAVTVRERDSMKQERV 444

Query: 430 SLEEVINYASHRF 442
           SL+++  Y + R 
Sbjct: 445 SLDQIEGYLAGRL 457


>gi|194017166|ref|ZP_03055778.1| histidyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194011034|gb|EDW20604.1| histidyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 424

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 112/403 (27%), Gaps = 16/403 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I R+        E+  P  +  +L+        D   KEM    D+  +++   
Sbjct: 20  WQYVEQIARDTCAAFQYKEIRTPIFEHTELFARGVGESTDIVQKEMYTFEDKKGRSITLR 79

Query: 108 PTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P         +  + + +    P   Y I   FR E        +  +F ++        
Sbjct: 80  PEGTASTVRSYVENKLFAQPAQPTKLYYIGPMFRYERPQTGRYRQFYQFGIEA--IGSKD 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCS 224
           P       +     Y +         I    +  S         E        E    C 
Sbjct: 138 PAIDAEVISLAMSVYEKAGLSNLKLVINSLGDKESRADYRKALVE-HFEPRIDEFCHDCQ 196

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENKR 276
                 P+   +   D    L +            S  + EK+   L         +   
Sbjct: 197 TRLHQNPLRILDCKKDRDHELMATAPSIQDYLNDESRTYFEKVKQYLTDIGVEYVVDPNL 256

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V          F   +      + T     G+   +  G  G  +  +  A+        
Sbjct: 257 VRGLDYYNHTAFEIMSNAEGFGAITTLAGGGRYDGLVEGIGGPESPGIGFAMSIERFLSA 316

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                  +       + I A     +D    +  RL K G     D  G+++  QF  AD
Sbjct: 317 IDAEGIDLPLQDGIDLYIAALGDDAKDYAVSLLNRLRKEGISSEMDYTGKKLKGQFKAAD 376

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            L      ++G   ++   V +K   TG + ++ L+E+I    
Sbjct: 377 RLKAKFIAVLGEDELAQHIVNVKDTTTGEQIEVKLDELIQMMK 419


>gi|169824587|ref|YP_001692198.1| glycyl-tRNA synthetase [Finegoldia magna ATCC 29328]
 gi|167831392|dbj|BAG08308.1| glycyl-tRNA synthetase [Finegoldia magna ATCC 29328]
          Length = 465

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/441 (11%), Positives = 134/441 (30%), Gaps = 48/441 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +N+     ++  +     + +    L +   WV SG    +   ++   
Sbjct: 35  WDYGSLGVEIKNNIKRAWWKKFIQQSPYNVGLDAAILMNPQTWVVSGHVGGFSDPLIDCK 94

Query: 98  --------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP---R 146
                   D+  +       +EE++    +S  +    +     +     +         
Sbjct: 95  ECKSRFRADKLIEDYYMNEKNEEIIGLDGKSEQELLDIIEKEDIKCPECGKHNFTDIRKF 154

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKS 192
             + ++ + + +D  S       +       F +  R                 R  +  
Sbjct: 155 NLMFKTFQGVTEDNKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEITP 214

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                 +          F       E   +      +F +       ++ + L    ++ 
Sbjct: 215 GNFIFRTREFEQMELEFFCKPGTDLEWFDYWRNFCKEFLLN--LGIREENLRLRDHSQEE 272

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHY 311
            + Y+  +            E   ++ R          G+         +      + + 
Sbjct: 273 LSFYSKATTDFEYLFPFGWGELWGIADRTDYDLSKHSEGS----GEKLEYMDPTTNEKYI 328

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCR 362
                  +G  R+  + +  ++D + +             ++A +K++++ +        
Sbjct: 329 PYCIEPSVGVDRMFLSFLCDAYDEEQLEDNTTRTVLKIHPALAAYKVAVLPLTKK---LN 385

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +IY  L        +DD G  IG ++   D  G P  V +    + D+ V I+ R 
Sbjct: 386 DKAMEIYNEL-AKNFMTHFDDAG-SIGKRYRREDEAGTPYCVTIDFDTLEDNTVTIRDRD 443

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +  ++ M++EE+I + +    
Sbjct: 444 SMEQKRMTVEEIIEFVNKEME 464


>gi|71899804|ref|ZP_00681954.1| TGS [Xylella fastidiosa Ann-1]
 gi|71730395|gb|EAO32476.1| TGS [Xylella fastidiosa Ann-1]
          Length = 332

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 2/89 (2%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   +     RD         L    + +   G+  W P G      +   IR     +G
Sbjct: 233 YMQRLQDAEKRDHRKIGKAQDLF--HLQEEGPGLVFWHPKGWVIWQTIENYIRRVYRNSG 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEML 94
             E+  P +    LW +SG +D+Y + M 
Sbjct: 291 YGELRCPQILDVSLWQKSGHWDNYKENMF 319


>gi|56295619|emb|CAH04860.1| partial threonyl-tRNA synthetase (HrrS) [uncultured archaeon]
          Length = 478

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 138/434 (31%), Gaps = 54/434 (12%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE-QNRTGAIEMSVPTLQ---SAD 78
           H+L    G       G + + P G      ++    E   NR  A+++  P L       
Sbjct: 78  HEL---VGYEPSSDSGNFRFYPKGYLIFQLLHDWANEIAVNRFKALQIDSPLLYAWDDPQ 134

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           +  ++G +      +      +D+  I     +  +  I +    SYRNLP   Y+    
Sbjct: 135 IREQAGTFHERHYSVRPP--DSDREFILRFAGDFGLFKIMKDATISYRNLPLRMYEFSKS 192

Query: 139 FRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           FR E      G+ R R F M D + F    E     Y +++ +Y  +    G++   +  
Sbjct: 193 FRYERSGELSGLKRLRAFHMPDIHCFCRDMEEGWTEYQELYRNYSDLADASGVEYAIVF- 251

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                        IV +   E +            P+      +     ++  ++     
Sbjct: 252 ------------RIVESFYNENRSRIVDLVKYSNQPAFIEVLSEAKHYWAVKNEFQG--- 296

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                               S RG           K +      +   DGK     +   
Sbjct: 297 ------------------VDSTRGCIQLSTVQLDVKDAQVYGIDYTDRDGKKKGCIICHS 338

Query: 318 GIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            IG   R   +++E +   +    P  ++P ++ +I +    +   + C      L   G
Sbjct: 339 SIGSIERWYYSLLEEALKKEQPTLPVWLSPTQVRIIPV---SEKQLEYCR----YLDIDG 391

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                DD  E +  + A A     P   +VG +      + +  R TG R  M+ EE+  
Sbjct: 392 VRYDVDDSDETLAKKIAKASTEWIPYVAVVGDREAESGVLSVSIRETGKRVTMTREELAQ 451

Query: 437 YASHRFSNN--RPV 448
                 +    RP+
Sbjct: 452 EVRRHCAGRPYRPL 465


>gi|240145042|ref|ZP_04743643.1| glycine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257202867|gb|EEV01152.1| glycine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|291535367|emb|CBL08479.1| glycyl-tRNA synthetase, dimeric type [Roseburia intestinalis M50/1]
 gi|291538177|emb|CBL11288.1| glycyl-tRNA synthetase, dimeric type [Roseburia intestinalis XB6B4]
          Length = 465

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 60/442 (13%), Positives = 136/442 (30%), Gaps = 47/442 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     +      L +   WV SG    +   ++   
Sbjct: 32  WDYGNLGVELKNNVKRAWWQKFIQENPYNVGVDCAILMNPQTWVASGHLGGFSDPLMDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           + +++        E+   +       S   +       +  + +       +      R+
Sbjct: 92  ECHER-FRADKIIEDFAEEKKIELKSSVDGWTQEEMRDFIEENQVPCPTCGKHNFTDIRQ 150

Query: 155 FLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRA 197
           F +       +T +     Y                             ++G        
Sbjct: 151 FNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQVGKSFRNEIT 210

Query: 198 ESGPIGGDLSHEFIV---LADTG-ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                      E +      + G + + F                 +D + L        
Sbjct: 211 PGNFTFRTREFEQMELEFFCEPGTDLEWFQYWRGFCRDWLISLGIKEDEMRLRDHDPAEL 270

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           A Y+  +            E   ++ R            + S      F     + +   
Sbjct: 271 AFYSKGTTDIEFLFPFGWGELWGIADRTDYDLGRHQ---ETSGQDLTYFDDEKNERYLPY 327

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVC 361
           +    +GA RVV A + +++D + I             +  ++AP KI ++ +       
Sbjct: 328 VIEPSLGADRVVLAFLCAAYDEENIGTEEKPDMRTVLHFHPALAPVKIGVLPLSKK---L 384

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +  EK++A+L     +  +DD G  IG ++   D +G P  V    +  +D  V ++ R
Sbjct: 385 NEGAEKVFAQL-SHKYNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFESENDGAVTVRDR 442

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            T  +E + +E++  Y + +F+
Sbjct: 443 DTMEQERIKIEDLDAYFAEKFN 464


>gi|108800411|ref|YP_640608.1| glycyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119869540|ref|YP_939492.1| glycyl-tRNA synthetase [Mycobacterium sp. KMS]
 gi|108770830|gb|ABG09552.1| glycyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119695629|gb|ABL92702.1| glycyl-tRNA synthetase [Mycobacterium sp. KMS]
          Length = 468

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 65/439 (14%), Positives = 137/439 (31%), Gaps = 42/439 (9%)

Query: 40  YSWLPLGQKALDNVNA-IIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+     R     R   + +    +    +WV SG  + +     E L
Sbjct: 35  WDYGPLGVELKENIKRQWWRSVVTGRDDVVGLDSAIILPRQVWVASGHVEVFNDPLVECL 94

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSR 153
               R+ +  +     E+       +   S             K +  E R    ++++ 
Sbjct: 95  NCHKRHRQDHLQEAYFEKKGAKDGLAGPDSVPMDEIVCPDCGTKGQWTEPRDFNMMLKTY 154

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAES 199
              ++           +       F + +                  R  +        +
Sbjct: 155 LGPIETEEGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQIGKSFRNEITPGNFIFRT 214

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                     F+  +   E   +     + + +     D D++       ++ +     T
Sbjct: 215 REFEQMEMEFFVEPSTAKEWHQYWIDTRLQWYV-DLGIDRDNLRLYEHPKDKLSHYSDRT 273

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSY 317
            D+  +  F   P  +     G+     F   T  K+S    + +  A    +   +   
Sbjct: 274 VDIEYKFGFAGNPWGELE---GVANRTDFDLSTHAKHSGADLSFYDQATETRYTPYVIEP 330

Query: 318 GIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDA 364
             G  R + A +  S+                       +AP K +++ +  H       
Sbjct: 331 AAGLTRSLMAFLVDSYTEDEAPNAKGGVDKRTVLRLDPRLAPVKAAVLPLSRH-ADLSPK 389

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              + A L K   +V +DD G  IG ++   D +G P  + V    ++D  V I+ R T 
Sbjct: 390 ARDLAAELRKNW-NVEFDDAGA-IGRRYRRQDEIGTPYCITVDFDSLTDHAVTIRERDTM 447

Query: 425 IREDMSLEEVINYASHRFS 443
            ++ ++L EV +Y + R  
Sbjct: 448 TQDRVALSEVSDYLALRLK 466


>gi|325843420|ref|ZP_08167978.1| glycine--tRNA ligase [Turicibacter sp. HGF1]
 gi|325489342|gb|EGC91716.1| glycine--tRNA ligase [Turicibacter sp. HGF1]
          Length = 457

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 64/435 (14%), Positives = 144/435 (33%), Gaps = 42/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     +      L +   WV SG    +   ++   
Sbjct: 33  WDYGPLGVELKNNVKKAWWKKFIQESPYNVGLDSAILMNPQTWVASGHVGGFSDPLMDCK 92

Query: 98  DRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRS 152
               +     +I     + V        + +Y                 ++R    + ++
Sbjct: 93  VCKSRHRADKLIEDHGDDIVADGWTEEQMMNYIREHNIACPDCGAHDFTDIRQFELMFKT 152

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL-----------GLKSIPMRAESGP 201
              ++ D  S       +       F +  R   +                I     +  
Sbjct: 153 HMGVVSDEKSAVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITPGNFTFR 212

Query: 202 IGGDLSHEFIVLADTGETQVFC--SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                  E       GE   +    K++    + S   + + I       E+ +     T
Sbjct: 213 TREFEQMELEFFCKPGEDAKWYEFWKEYCWNWLVSLGMNPEHIRQREHSPEELSHYSNGT 272

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGAD-GKDHYVQMGSY 317
           SD+   +      E   V+ R       F           +  ++     + +       
Sbjct: 273 SDI-EYRFPFGWGELWGVANR-----TDFDLKAHMKESGANFEYQDPTTNEKYVPYCIEP 326

Query: 318 GIGAMRVVAAVIESSH---------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            +GA RV  A +  ++           + + +  ++AP+K++++ +        +   ++
Sbjct: 327 SVGADRVTLAFLVDAYAEETLENGETREVLKFHPALAPYKVAVLPLVKK---LNEQALEV 383

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +A LSK    V +D+ G  IG ++   D +G P  VI     + D KV ++HR T  +E 
Sbjct: 384 FADLSKH-MMVDYDEAG-TIGKRYRRQDAIGTPFCVIFDYDSLEDKKVTVRHRDTMEQER 441

Query: 429 MSLEEVINYASHRFS 443
           ++++E++ Y + +  
Sbjct: 442 VAIDELVEYITSKIQ 456


>gi|317506968|ref|ZP_07964737.1| glycyl-tRNA synthetase [Segniliparus rugosus ATCC BAA-974]
 gi|316254726|gb|EFV14027.1| glycyl-tRNA synthetase [Segniliparus rugosus ATCC BAA-974]
          Length = 466

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 59/436 (13%), Positives = 134/436 (30%), Gaps = 42/436 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           + + PLG +  +N+     +     R   + +    +    +WV SG  + +   ++   
Sbjct: 37  WDYGPLGVELKENIKRQWWQSVVTAREDVVGLDSSIILPRQVWVASGHVEVFNDPLVESL 96

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           +  +  +A      +E        + +   R+              E R    ++++   
Sbjct: 97  ITHKRYRADHLIEAYEAKHGHPPPNGLADIRDPETGQPGQWT----EPRDFNMMLKTHLG 152

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLS 207
            ++           +       F + +    R         G            I     
Sbjct: 153 PIETEEGMHYLRPETAQGIFVNFANVVTTARRKPPFGIAQIGKSFRNEITPGNFIFRTRE 212

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIP-----SENTDFDDIISLNSIVEQWTAPYAATSDV 262
            E + +    E                        D +++       E+ +     T D+
Sbjct: 213 FEQMEMEFFVEPATAAEWHQHWIDTRLQWYVDLGIDPENLRLYEHPKEKLSHYSDRTVDI 272

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIG 320
                F      +     G+     F   T  K+S    + +  A+ + +   +     G
Sbjct: 273 EYRFRFQGSEWGELE---GVANRTDFDLSTHAKHSGVDLSYYDQAEDRRYTPYVIEPAAG 329

Query: 321 AMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEK 367
             R + A +  ++                       +AP K +++ +   D       ++
Sbjct: 330 LTRSLMAFLVDAYAEDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPL-QKDGELVGKAKE 388

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + ARL K   ++ +D+    IG ++   D +G P  + V  + + D  V I+ R T  +E
Sbjct: 389 LAARLRKRW-NIDYDETQA-IGRRYRRQDEIGTPFCITVDFESLEDQAVTIRERDTMSQE 446

Query: 428 DMSLEEVINYASHRFS 443
            ++L++V  Y   R  
Sbjct: 447 RVALDQVGRYLLERLD 462


>gi|295400623|ref|ZP_06810600.1| glycyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977204|gb|EFG52805.1| glycyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 460

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 59/437 (13%), Positives = 133/437 (30%), Gaps = 42/437 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     + +    L +   W  SG   ++   M+   
Sbjct: 32  WDYGPLGTELKNNIKRAWWKKFVQESPYNVGLDAAILMNPKTWEASGHLGNFNDPMIDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +          +        +             +                R+F +
Sbjct: 92  QCKARHRADKLIESALEEKGIEMVVDGLPFEKMEELIKEHNIACPECGSHDFTNIRQFNL 151

Query: 158 KDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAE------------- 198
                  +T   +   Y        +FV++  +   +  K     A+             
Sbjct: 152 MFKTYQGVTESSANEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIAQIGKSFRNEITPGN 211

Query: 199 -SGPIGGDLSHEFIVLADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            +         E       GE   +    K F    + S     ++I   +   E+ +  
Sbjct: 212 FTFRTREFEQMELEFFCKPGEELKWFDYWKQFCKQWLLSLGMKEENIRLRDHTKEELSHY 271

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             AT+D+   K      E   +++R            +YS            + +     
Sbjct: 272 SNATTDI-EYKFPFGWGELWGIASRTDYDLKQH---MEYSGEDFRYIDQETNERYIPYCI 327

Query: 316 SYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACE 366
              +GA RV  A +  ++D +          +    ++AP+K ++  +        +   
Sbjct: 328 EPSLGADRVTLAFMIDAYDEEELEDGTTRTVMRLHPALAPYKAAVFPLSKK---LAEGAR 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            I+A LSK    V +D+ G  IG ++   D +G P  +        D  V ++ R T  +
Sbjct: 385 NIFADLSKH-FMVDYDETG-SIGKRYRRQDEIGTPFCITYDFDSEQDGMVTVRDRDTMEQ 442

Query: 427 EDMSLEEVINYASHRFS 443
             + + ++ ++   +  
Sbjct: 443 VRIPISQLKSFLEEKVQ 459


>gi|329946915|ref|ZP_08294327.1| glycine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526726|gb|EGF53739.1| glycine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 464

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 59/434 (13%), Positives = 129/434 (29%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +   R+    + +    +   ++WV SG   ++   ++   
Sbjct: 35  WDYGPLGVELKENIKRQWWQYMVRSRDDVVGLDSSVILPREVWVASGHVQAFTDPLIECQ 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
             + + +      E            +             + R  E +   G++++    
Sbjct: 95  SCHKR-LREDELQETYAAKHGIEDPSTVSLEQVACPSCGTRGRFTEPKAFSGLLKTYLGP 153

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLSH 208
           + D          +       F + +    +         G            I      
Sbjct: 154 VDDESGLHYLRPETAQGIFVNFAAVMSAARKKPPFGIGQVGKSFRNEITPGNFIFRTREF 213

Query: 209 E-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           E     F     T E       D+             ++       E+ +     T D+ 
Sbjct: 214 EQMELEFFCEPGTDEEWHQYWIDYRKAWYTDLGISEGNLRLYEHPAEKLSHYSKRTVDLE 273

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGIGA 321
               F      +     GI     F   T   +S    + F     +     +     G 
Sbjct: 274 YRFGFAGSEWGELE---GIANRTDFDLSTHAEHSGKDLSYFDQTRSERWIPYVIEPSAGL 330

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       +AP K +++ +   +++     +++
Sbjct: 331 TRSLMAFLVEAYTEDEAPNTKGGVDKRIVLRLDPRIAPVKAAVLPLSRKEELTGP-AKEL 389

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ARL +   +V +DD G  +G ++   D +G P  +        D  V ++ R T  +E 
Sbjct: 390 AARLRRSW-NVDYDDAGA-VGRRYRRQDEVGTPFCLTYDFDSPEDGAVTVRERDTMTQER 447

Query: 429 MSLEEVINYASHRF 442
           + LE V  Y + R 
Sbjct: 448 IPLEGVERYLAERL 461


>gi|324504606|gb|ADY41988.1| Bifunctional aminoacyl-tRNA synthetase [Ascaris suum]
          Length = 401

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 13/181 (7%)

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           V+ R I+     + G  +S     +F+  D G   Y    S+G+ + R + A+I    D 
Sbjct: 120 VNGRSIQGATSHHLGQNFSKMFDISFEEPDKGGKAYAWQNSWGL-STRTIGAMIMIHGDD 178

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRD-------ACEKIYARLSKVGCDVFWDDMGE-Q 387
            G++ P  VA  ++ ++ +    Q   +         E+I   L  VG     D      
Sbjct: 179 NGLVLPPRVAAIQMIVVPVGVTAQTSEEQRKMLICKAEEITDLLVSVGIRAESDLRDNYS 238

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS---LEEVINYASHRFSN 444
            G +F   +L G P++V VG + V++++V    RL+G +  +    L E      +    
Sbjct: 239 PGWKFNHWELKGVPVRVEVGPRDVANNQVTCVIRLSGEKRAIPVSGLAEASKKMLNEIHE 298

Query: 445 N 445
            
Sbjct: 299 R 299



 Score = 38.6 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 40/85 (47%)

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +   PT E VM   +   ++S+R+LP    Q     R E +     +R+REFL ++ ++
Sbjct: 4   PIAIRPTSETVMYPSYAKWVQSHRDLPIRLNQWCNVVRWEFKHPTPFLRTREFLWQEGHT 63

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHR 187
              T + ++    ++   Y +I+  
Sbjct: 64  AFHTAKEAETEVYQILDLYAQIYTD 88


>gi|294497108|ref|YP_003560808.1| glycyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|295702473|ref|YP_003595548.1| glycyl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294347045|gb|ADE67374.1| glycyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294800132|gb|ADF37198.1| glycyl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 460

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 52/435 (11%), Positives = 131/435 (30%), Gaps = 44/435 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     + +    L +   W  SG   ++   M+   
Sbjct: 32  WDYGPLGVELKNNIKKAWWKKFIQESPYNVGLDAAILMNPKTWEASGHLGNFNDPMIDCK 91

Query: 98  DRNDKAMIYGPTHEEVM--TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           D   +        E++            S+  +     + ++   +           R+F
Sbjct: 92  DCKARHRADKLIEEKLQEKGIEMIVDGLSFDAMADLIKEHEITCPE--CGSANFTEIRQF 149

Query: 156 LMKDAYSFDLTPEGSKHSYNK-----------------MFVSYLRIFHRLGLKSIPMRAE 198
            +       +T   +   Y +                 M         ++G         
Sbjct: 150 NLMFKTHQGVTETSTNEIYLRPETAQGIFVNFKNVQRSMRKKLPFGIGQVGKSFRNEITP 209

Query: 199 SGPIGGDLSHEFI----VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                     E +          E + F                 ++ + L    +   +
Sbjct: 210 GNFTFRTREFEQMELEFFCKPGTELEWFNYWKETCNKWLLSLGMKEENVRLRDHDDDELS 269

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
            Y+  +     K      E   V++R            ++S            + +    
Sbjct: 270 HYSNATTDFEYKFPFGWGELWGVASRTDYDLKQH---MEHSGEDFQYVDQETNERYVPYC 326

Query: 315 GSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDAC 365
               +GA RV  A +  +++ +          +    ++APFK +++ +        +  
Sbjct: 327 IEPSLGADRVTLAYMIDAYEEETLEDGSSRTVMQLHPALAPFKAAVLPLSKK---LSNEA 383

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
             ++  L      + +DD G  IG ++   D +G P  +      + D++V I++R T  
Sbjct: 384 RAVFEDL-AKYFMIDYDDAG-SIGKRYRRHDEIGTPFCITFDFDSLEDNQVTIRNRDTME 441

Query: 426 REDMSLEEVINYASH 440
           ++ +++ ++ N    
Sbjct: 442 QKRVAISDLKNIIEE 456


>gi|320534185|ref|ZP_08034713.1| glycyl-tRNA synthetase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133595|gb|EFW26015.1| glycyl-tRNA synthetase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 463

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 59/433 (13%), Positives = 126/433 (29%), Gaps = 37/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           + + PLG +  +N+     +   R+    + +    +   ++WV SG   ++   ++   
Sbjct: 35  WDYGPLGVELKENIKRQWWQYMVRSRDDVVGLDSSVILPREVWVASGHVGAFTDPLVESL 94

Query: 97  -ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP---------- 145
              +  +A      +         +        P T          E             
Sbjct: 95  HTHKRYRADQLVEDYAARKGLDPEAVTLDMVPDPVTGQPGSWTEPREFSGLLKTYLGPVD 154

Query: 146 -RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              G+   R    +  +        +        +  +    R  +        +     
Sbjct: 155 DESGLHYLRPETAQGIFINFTNVMSAARKKPPFGIGQVGKSFRNEITPGNFIFRTREFEQ 214

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               EF     T E       D+            D++       E+ +     T D+  
Sbjct: 215 MEL-EFFCEPGTDEEWHQYWIDYRKAWYTDLGISEDNLRLYEHPTEKLSHYSKRTVDLEY 273

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F      +     GI     F   T   +S    + F     +     +     G  
Sbjct: 274 RFGFAGSEWGELE---GIANRTDFDLSTHAEHSGKDLSYFDQTRSERWTPYVIEPSAGLT 330

Query: 323 RVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           R + A +  ++                       +AP K +++ +   +++     +++ 
Sbjct: 331 RSLMAFLVEAYTEDEAPNTKGGVDKRIVLKLAPRIAPVKAAVLPLSRKEELTGP-AKELA 389

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           ARL +   +V +DD G  +G ++   D +G P  +        D  V ++ R T  +E +
Sbjct: 390 ARLRRSW-NVEYDDAGA-VGRRYRRQDEVGTPFCLTYDFDSPEDGAVTVRERDTMTQERI 447

Query: 430 SLEEVINYASHRF 442
            LE V  Y + R 
Sbjct: 448 PLEGVERYLAERL 460


>gi|70726291|ref|YP_253205.1| histidyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|83305878|sp|Q4L6X6|SYH_STAHJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|68447015|dbj|BAE04599.1| histidyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
          Length = 423

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 59/406 (14%), Positives = 113/406 (27%), Gaps = 17/406 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   + +        E+  P  +S DL+        D   KEM    D+ D+++   
Sbjct: 19  WRYIENQLDKLMKLYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLR 78

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDL 165
           P     +      + ++   N P   Y     FR E + +    R R+F           
Sbjct: 79  PEGTAAVVRSYIENKMQGIPNQPVKLYYNGPMFRYERKQKG---RYRQFTQFGVEAIGAE 135

Query: 166 TPEGSKHSYNKMFVSYLRIFHR--------LGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            P         +   Y     +        +G            I            D  
Sbjct: 136 NPSMDAEVLAMVMHIYESFGLKHLKLVINSIGDADSRKEYNEALIRHFEPVIDTFCDDCK 195

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN-KR 276
                     +D  I  +     +   +   +   +  Y      H + L  S  E+   
Sbjct: 196 SRLHTNPMRILDCKIDRDKEAVKNAPRITDYLNDDSKAYFNEVKTHLDDLGISYVEDPNL 255

Query: 277 VSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           V          F           A T     G+ + +     G     +  A+       
Sbjct: 256 VRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPNQTGIGFALSIERLLL 315

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +       + I    +       K+  +L K G     D +  ++  Q   A
Sbjct: 316 ALEEEGIELDVEDTFDLFIVTMGEEAERYSVKLLNQLRKSGIKADKDYLQRKVKGQMKQA 375

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D L     V++G + + +  +++K   TG  E ++L  ++NY   +
Sbjct: 376 DRLNAQYTVVIGDQELENEVIDVKDMSTGETETINLNNLVNYFQEK 421


>gi|312794171|ref|YP_004027094.1| histidyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181311|gb|ADQ41481.1| histidyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 421

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 69/422 (16%), Positives = 121/422 (28%), Gaps = 27/422 (6%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEM 93
           P G K            V    RE     G  E+  PT +  +L+        D   KEM
Sbjct: 6   PKGTKDVLPEESYMWQYVENKFREICKLYGYQEVRFPTFEYTELFQRGVGETTDIVQKEM 65

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
               D+  +++   P        +F  H  + R +P  FY I   FR E           
Sbjct: 66  YTFLDKGGRSITLRPEGTASTARLFIEHGFASRPMPQRFYYIISAFRYENTQGGRFREFH 125

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F +++  S   +P       +  +  +  I       +I       P+      + +  
Sbjct: 126 QFGIENFGSS--SPVTDAEVISLAYNFFTSIGLDNITVNINSIGC--PVCRKEYVKNLKE 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV---HNEKLFDS 270
             +  +Q  C                        I +    P     D    H E +   
Sbjct: 182 YFSANSQKLCHTCHQRLDKNPMRILDCKEEGCKLIAKDAPKPIDYLCDDCKSHFESVKTY 241

Query: 271 LPENKRV------SARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           L     V        RG++     +F      S    A   G    +   Q+G   I  +
Sbjct: 242 LDSAMVVYKVDPFIVRGLDYYTKTVFEIVAPVSDKDLAICGGGRYDNLIEQIGGNSIPGI 301

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                V       +      +        +      +       +I   L   G     +
Sbjct: 302 GFAIGVERLLMLLEQNGLLPARPQVPQVFVATVG--ENSLKEAFEIARMLRFEGISTIIE 359

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +MG  + SQ   AD +G    +I+G   ++    +I++  T     + +E V  Y   + 
Sbjct: 360 EMGRSLKSQMKYADKIGCQFSIIIGDDEIAKGVCKIRNMRTSSEGIVEIENVCQYLKEKL 419

Query: 443 SN 444
             
Sbjct: 420 QK 421


>gi|229828494|ref|ZP_04454563.1| hypothetical protein GCWU000342_00556 [Shuttleworthia satelles DSM
           14600]
 gi|229793088|gb|EEP29202.1| hypothetical protein GCWU000342_00556 [Shuttleworthia satelles DSM
           14600]
          Length = 465

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 60/431 (13%), Positives = 130/431 (30%), Gaps = 49/431 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     +      L +   WV SG   S+   ++   
Sbjct: 32  WDYGNLGVELKNNVKRAWWQKFIQESPQNVGIDGAILMNPQTWVASGHLGSFSDPLMDCK 91

Query: 98  DRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           + +++     +I     E  +         S + +     +  +        +      R
Sbjct: 92  ECHERFRADKIIEDFAQEHQIVLPSSVDGWSNKEMEDWIQEHNVPCP--SCGKHNFTEIR 149

Query: 154 EFLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMR 196
           +F +       +T +     Y                             ++G       
Sbjct: 150 QFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEI 209

Query: 197 AESGPIGGDLSHEFIV---LADTG-ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                       E +      + G + + F                  D I L    ++ 
Sbjct: 210 TPGNFTFRTREFEQMELEFFCEPGTDMEWFHYWRGFCRDWLLSLGMNKDHIRLRDHDKEE 269

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            + Y+  +            E   ++ R            + S    + F  A  + +  
Sbjct: 270 LSFYSKGTTDIEYTFPFGWGELWGIADRTDYDLTRHQ---EVSGADMSYFDDAKNEKYIP 326

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQV 360
            +    +GA RVV A +  ++D + I             +  ++AP K+ ++ +      
Sbjct: 327 YVIEPSLGADRVVLAFLCEAYDEENIGTEDKPDMRTVLHFHPALAPVKVGVLPLSKK--- 383

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   KIY RLSK   +  +DD G  IG ++   D +G P  V       +D  V ++ 
Sbjct: 384 LAEGATKIYERLSKK-FNCEYDDRG-NIGKRYRRQDEIGTPFCVTYDFDSETDGAVTVRD 441

Query: 421 RLTGIREDMSL 431
           R +  +  + +
Sbjct: 442 RDSMEQVRLPI 452


>gi|229826225|ref|ZP_04452294.1| hypothetical protein GCWU000182_01597 [Abiotrophia defectiva ATCC
           49176]
 gi|229789095|gb|EEP25209.1| hypothetical protein GCWU000182_01597 [Abiotrophia defectiva ATCC
           49176]
          Length = 416

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 63/397 (15%), Positives = 118/397 (29%), Gaps = 19/397 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              + AI RE  +     E+  P  +   L+  S     D   KEM    D+ D+ +   
Sbjct: 20  RTKIEAIARELCSAYNIGEIITPAFEHTVLFNRSVGDTTDVVQKEMYTFKDKGDREISLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         +  +       P   +     FR E      + +  +F ++   S   +P
Sbjct: 80  PEGTAGTIRAYLENNLYALPQPIKMFYFTQAFRYERPQSGRLRQHHQFGVEFVGS--PSP 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVFCSK 225
                    +         R+GLK + +   S          ++ ++    G     C  
Sbjct: 138 MVEVELITLVSEFIK----RIGLKDVKLHINSIGYGECRKKYNDALLGYLKGYEAELCED 193

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
             +             + S  +IVE+         D   +  FD+L +         E+ 
Sbjct: 194 CKVRMQKNPLRVIDCKVPSCKAIVEK-APRTLDFLDEECKNHFDTLQKMLTELNIPFEID 252

Query: 286 HIFYFGTKYSLPMSATFKGADG---KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
                G  Y       F   DG          G       +     +      + I++  
Sbjct: 253 TGIVRGLDYYTKTVFEFVDKDGFTLCGGGRYDGLINEIDGKQNIPAVGFGMGIERILYFL 312

Query: 343 SVAPFKISLIN-----IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                 +  +      +       +    +I  +L   G  V  D +   + +Q   A+ 
Sbjct: 313 EKEGVSLGEMPHPRLYVGIMGDEVKAKAFEIVTKLRNKGVIVETDYLDRSVKAQMKYANK 372

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           LG    VI+G        V++K+  TG   ++  EE+
Sbjct: 373 LGVDYTVIIGQNEAESGLVKLKNMETGDETEVKFEEL 409


>gi|302380356|ref|ZP_07268826.1| glycine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302311846|gb|EFK93857.1| glycine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
          Length = 465

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 52/441 (11%), Positives = 132/441 (29%), Gaps = 48/441 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +N+     ++  +     + +    L +   WV SG    +   ++   
Sbjct: 35  WDYGSLGVEIKNNIKRAWWKKFIQQSPYNVGLDAAILMNPQTWVVSGHVGGFSDPLIDCK 94

Query: 98  --------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP---R 146
                   D+  +       +EE+     +S  +    +     +     +         
Sbjct: 95  ECKSRFRADKLIEDYFMNEKNEEITGLDGKSEKELLDIIEKEDIKCPECGKHNFTDIRKF 154

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKS 192
             + ++ + + +D  S       +       F +  R                 R  +  
Sbjct: 155 NLMFKTFQGVTEDNKSEIYLRPETAQGIFVNFKNVQRTSRKKVPFGIGQIGKSFRNEITP 214

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                 +          F       E   +      +F +        + + L    ++ 
Sbjct: 215 GNFIFRTREFEQMELEFFCKPGTDLEWFDYWRNFCKEFLLN--LGIRGENLRLRDHSQEE 272

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-GKDHY 311
            + Y+  +            E   ++ R          G+         +      + + 
Sbjct: 273 LSFYSKATTDFEYLFPFGWGELWGIADRTDYDLSKHSEGS----GEKLEYMDPTTNEKYI 328

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCR 362
                  +G  R+  + +  ++D + +             ++A +K++++ +        
Sbjct: 329 PYCIEPSVGVDRMFLSFLCDAYDEEQLEDNTTRTVLKIHPALAAYKVAVLPLTKK---LN 385

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D   +IY  L        +DD G  IG ++   D  G P  V +    + D+ V I+ R 
Sbjct: 386 DKAMEIYNEL-AKNFMTHFDDAG-SIGKRYRREDEAGTPYCVTIDFDTLEDNTVTIRDRD 443

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  ++ M++EE+I + +    
Sbjct: 444 TMEQKRMTVEEIIEFVNKEME 464


>gi|315924009|ref|ZP_07920236.1| glycyl-tRNA synthetase beta subunit [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622635|gb|EFV02589.1| glycyl-tRNA synthetase beta subunit [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 461

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 61/438 (13%), Positives = 139/438 (31%), Gaps = 44/438 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + P+G +  +NV     ++  +     + +    L +   WV SG    +   ++   
Sbjct: 33  WDYGPIGVEIKNNVKRAWWKKFIQESPYNIGLDAAILMNPQTWVASGHVGGFNDPLMDCK 92

Query: 98  DRNDK-------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD--ELRPRFG 148
               +          +    EEV+ D + +                    D  E+R    
Sbjct: 93  HCKSRFRADKLIEDYFHDKGEEVVVDGWSNEKMEAFIQDHHIACPDCGESDFTEIRQFNL 152

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESG 200
           + ++ + + +D+ S       +       F +  R   +         G           
Sbjct: 153 MFKTFQGVTEDSTSQLYLRPETAQGIFVNFKNAQRTTRKRVPFGIGQIGKSFRNEITPGN 212

Query: 201 PIGGDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            I      E     F     T        KD+    + S     +++   +   E+ +  
Sbjct: 213 FIFRTREFEQMELEFFCKPGTDLEWFTYWKDYCRSWLFSLGMKEENLRFRDHSPEELSHY 272

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQM 314
             AT+DV   +      E   ++ R                     ++     + +   +
Sbjct: 273 SNATTDV-EYQFPFGWGELWGIADRTDFDLTQHE----NVSGKDLRYQDPATNEKYIPYV 327

Query: 315 GSYGIGAMRVVAAVIESSHDG---------KGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
               +GA R+  A +  + +            +     ++ +K +++ +        D  
Sbjct: 328 IEPSLGADRMFLAFLCDALEHEKLDGGDTRNVMKIHPFLSAYKAAVLPLSKK---LSDKA 384

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++YA L     +V +D+ G  IG ++   D +G PL V +    + D+ V I+ R T  
Sbjct: 385 REVYADL-AKYFNVDYDETG-SIGKRYRREDEIGTPLCVTIDFDTLEDNAVTIRDRDTME 442

Query: 426 REDMSLEEVINYASHRFS 443
           +  + + +V  Y   + +
Sbjct: 443 QIRLPIGQVKAYIEEKIA 460


>gi|120404776|ref|YP_954605.1| glycyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
 gi|166227938|sp|A1TBP9|SYG_MYCVP RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|119957594|gb|ABM14599.1| glycyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
          Length = 468

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 62/438 (14%), Positives = 132/438 (30%), Gaps = 40/438 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +N+          +R   + +    +   ++WV SG  + +     E L
Sbjct: 35  WDYGPLGVELKENIKRQWWRAVVTSRDDVVGLDSAIILPREVWVASGHVEVFNDPLVECL 94

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSR 153
               R+ +  +     E+           +             K +  E R    ++++ 
Sbjct: 95  NCHKRHRQDHMQEAYAEKEAKKGVTVDPDAVAMTEIVCPDCGTKGQWTEPRDFNMMLKTY 154

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGD 205
              ++           +       F + +    +         G            I   
Sbjct: 155 LGPIETEEGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQIGKSFRNEITPGNFIFRT 214

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIP-----SENTDFDDIISLNSIVEQWTAPYAATS 260
              E + +    E                        + D++       E+ +     T+
Sbjct: 215 REFEQMEMEFFVEPSTAAEWHRYWIETRLQWYVDLGINRDNLRLYEHPKEKLSHYSDGTT 274

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYG 318
           D+  +  F   P  +     GI     F   T  K+S    + +  A+   +   +    
Sbjct: 275 DIEYKFGFAGNPWGELE---GIANRTNFDLSTHSKHSGVDLSFYDQANDTRYVPYVIEPA 331

Query: 319 IGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDAC 365
            G  R + A +  ++                       +AP K +++ +  H        
Sbjct: 332 AGLTRSLMAFLVDAYTEDEAPNAKGGVDKRTVLRLDPRLAPVKAAVLPLSRH-ADLSPKA 390

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
             + A L +   +V +DD G  IG ++   D +G P  +      + D  V I+ R    
Sbjct: 391 RDLAAELRQSW-NVEFDDAGA-IGRRYRRQDEIGTPYCITFDFDSLEDHAVTIRERDAMT 448

Query: 426 REDMSLEEVINYASHRFS 443
           +E +++ EV NY + R  
Sbjct: 449 QERVAISEVSNYLAVRLK 466


>gi|302497924|ref|XP_003010961.1| hypothetical protein ARB_02859 [Arthroderma benhamiae CBS 112371]
 gi|291174507|gb|EFE30321.1| hypothetical protein ARB_02859 [Arthroderma benhamiae CBS 112371]
          Length = 581

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 74/218 (33%), Positives = 111/218 (50%), Gaps = 1/218 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G++  LPLG +  + +  +I +   +  A ++S+ +L S  LW +SGR      E+ R  
Sbjct: 27  GVFHLLPLGLRVQEKLERLIDKHMRKLSASKLSLSSLSSQALWKKSGRLHDDDSEVFRFV 86

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           DR     +  PTHEE +T +    IKSYR+LP   YQI  K+RDE RPR G++R REF+M
Sbjct: 87  DRKKTPFLLAPTHEEEITTVVSGLIKSYRDLPLRVYQISRKYRDEPRPRHGLLRGREFVM 146

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           KD Y+FD T   +  +YN +  +Y+ +F  L L  +   A SG +GG+LSHEF   +  G
Sbjct: 147 KDLYTFDSTEAEAIKTYNTVKEAYISLFKELKLPYVVASASSGNMGGNLSHEFHFPSPKG 206

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           E  +       ++    E                  +P
Sbjct: 207 EDTIVSCSKC-EYVFNEELASGKTSCKRTEHKPNLNSP 243



 Score = 99.4 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 14/192 (7%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-----------KGADGKDHYVQM 314
               +         + IE+ H F+ GT+YS  + A             +    +   +QM
Sbjct: 390 DECPNCGNPALKIDQSIELAHTFHLGTRYSEVLQANISINPAILTGAGQKGKQEPVPIQM 449

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G +GIG  R+++AV +   D KG+ WP ++APF+++++      +   +    I  + ++
Sbjct: 450 GCHGIGVSRMISAVSDILADEKGLNWPQAIAPFQVAVVP-GKGLEKEGELVYDIVTQKTQ 508

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV-SDSKVEIKHRLTGI-REDMSLE 432
              D   DD  +    +   AD++G+P+ + VG     + +KVE++ R  G  R  +SLE
Sbjct: 509 QPIDTILDDRKKDFAWKLRDADIIGYPIILAVGKNSWGAGNKVEVQCRRLGNLRTKVSLE 568

Query: 433 EVINYASHRFSN 444
           EV  + S   S 
Sbjct: 569 EVPEFVSSLLSK 580


>gi|227536433|ref|ZP_03966482.1| glycine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227243809|gb|EEI93824.1| glycine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 489

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 58/477 (12%), Positives = 134/477 (28%), Gaps = 63/477 (13%)

Query: 20  IASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQN--RTGAIEMSV 71
           + SH      G + Q S        +Y +  LG +  +N+     +         + +  
Sbjct: 12  VVSHAKE--YGFVFQSSEIYDGLSAVYDYGQLGSELKNNLKTYWWKSMVQLNENIVGIDA 69

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS------- 124
                   W  SG  D +   M+   D   +        E+ +                 
Sbjct: 70  AIFMHPTTWKASGHVDGFNDPMIDNKDSKKR-YRADQLIEDKIARYEADGKTDKAAALLA 128

Query: 125 ----YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
                 N         +     +       ++   + +    F            ++++ 
Sbjct: 129 DLNKALNADDLAGLKTIIEEHNIVCPVSGTKNWTEVRQFNLMFATQMGAMADGAEQVYLR 188

Query: 181 YLR---------------IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS- 224
                                     +   +A    +        +   +  E Q FC  
Sbjct: 189 PETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEVIARQFIMRMREFEQMEMQFFCRP 248

Query: 225 --KDFMDFPIPSENTDFDDIISLNSIVEQW-----TAPYAATSDVHNEKLFDSLPENKRV 277
             +             +   +  N    ++      A YA  +            E + +
Sbjct: 249 GTEMEWYNKWKETRLKWHLALGFNPDNYRYHDHDKLAHYANAAVDIEFNFPFGFKEVEGI 308

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------ 331
            +R            ++S      F     +++   +    IG  R+   V+ +      
Sbjct: 309 HSRTDFDLKQHQ---EFSKKKMQYFDTEINQNYIPYVVETSIGLDRLFLTVLCNSLVQED 365

Query: 332 ------SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
                       + +P ++AP K +++ +   D    +   +I A L  +  +V +D+  
Sbjct: 366 LSTDEKQDSRVVLKFPPALAPVKAAILPLTKKD-GLPEKAREIMAALK-LDYNVQYDEKD 423

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             IG ++   D +G P  + V  + + D+ V I+ R T  +E +++ ++    S   
Sbjct: 424 A-IGKRYRRQDAIGTPFCITVDHQSLEDNTVTIRDRDTMKQERVAIADLERIVSELV 479


>gi|291458568|ref|ZP_06597958.1| glycine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419101|gb|EFE92820.1| glycine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 476

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 59/441 (13%), Positives = 134/441 (30%), Gaps = 48/441 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +NV     ++  +     +      L +   WV SG    +   ++   
Sbjct: 46  WDYGNLGVELKNNVKRAWWKKFIQESKHNVGIDCAILMNPQTWVASGHLSGFSDPLMDCR 105

Query: 98  DRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           + +++     +I     E  +         +   +     + ++        +      R
Sbjct: 106 ECHERFRADKLIEDFASEHGIALDGSVDGWTKEKMESFVSEQRIPCP--SCGKHNFTGIR 163

Query: 154 EFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGP--- 201
           +F +       +T +     Y +          F +  R   +     I    +S     
Sbjct: 164 QFNLMFKTFQGVTEDAKDAVYLRPETAQGIFVNFKNVQRTSRKKLPFGIGQIGKSFRNEI 223

Query: 202 ----------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                         +  EF     T        KD+    + +       + + +   E+
Sbjct: 224 TPGNFTFRTREFEQMELEFFCKPGTDLEWFQYWKDYCKNWLLTLGLPGKMLRARDHDKEE 283

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
            +  Y+  +            E   ++ R            + S    + F       + 
Sbjct: 284 LS-FYSKATTDLEFLFPFGWGELWGIADRTDYDLSRHQ---EISGQDMSYFDDETKDHYI 339

Query: 312 VQMGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCR 362
             +    +GA RV  A + +++D            + +  ++AP KI ++ +        
Sbjct: 340 PYVIEPSLGADRVTLAFLCAAYDVEELEGGEERTVLRFHPAIAPVKIGVLPLSKK---LS 396

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  EKI   LS+      +DD G  IG ++   D +G P  V        D  V ++ R 
Sbjct: 397 EGAEKICTELSRRWY-CEYDDRG-NIGKRYRRQDEIGTPYCVTYDFDSEEDGCVTVRERD 454

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +  +  + +  +  Y   + S
Sbjct: 455 SMQQVRLPIASLPEYFEEKLS 475


>gi|268318023|ref|YP_003291742.1| glycyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
 gi|262335557|gb|ACY49354.1| glycyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
          Length = 481

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 74/468 (15%), Positives = 147/468 (31%), Gaps = 50/468 (10%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G I   S        +Y + PLG +   NV     E         + +    L    +
Sbjct: 14  RRGFIFPSSEIYGGLAAVYDYGPLGVELKRNVQQRWWEAMVYEHENIVGLDAAILMHPMV 73

Query: 80  WVESGRYDSYGKEMLRLADRN----------DKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           W  SG  D++   ++                D         E    +     +    N  
Sbjct: 74  WKASGHVDAFNDPLIDDRQSKRRYRADQLIEDYIEKLRAKGETERAEALHRRLIEALNAE 133

Query: 130 FTFYQIQLKFRDE--LRPRFGVMRSREFLMKD-AYSFDLTPEGSKHSYNK--------MF 178
                +     DE    P  G     E    +  +   + P  S+ +           +F
Sbjct: 134 DMPKALYQIIMDERIPSPDSGAFDWTEVRQFNLMFVTHVGPVASEETKVYLRPETAQGIF 193

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           V++  +     L+     A+ G    +       +    E +    + F+      E  +
Sbjct: 194 VNFHNVKDSSRLQIPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQYFVKPGTQMEAFE 253

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNE--KLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
                 L   +E    P      VH +     D+  + + +   G +     +  T Y L
Sbjct: 254 AWKEKRLQWHIENGIRPDHLRFHVHEKLAHYADAAVDIQYLFPMGWQEVEGIHSRTDYDL 313

Query: 297 PMSATFKGADGKD--------HYVQMGSYGIGAMRVVAAVIESSHDGKGI--------IW 340
                F G   +         +   +     G  R +  ++  ++D + +          
Sbjct: 314 RRHQEFSGKKMEYFDPQTQERYIPYVVETSAGLDRTILMLLCEAYDEEEVEGETRVVLRL 373

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              +AP K++++ +   D    +  + +   L     + F+D+ G  IG ++   D +G 
Sbjct: 374 HPRLAPIKVAVLPLVRKD-GMPERAQALARDLRPF-LNTFYDEKGA-IGRRYRRMDEVGT 430

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           P  V + S+ + D  V ++ R T  +E +   +V+ Y   R    +PV
Sbjct: 431 PFCVTIDSQTLEDGTVTVRDRDTMQQERVHETQVLAYIKDRLRQWKPV 478


>gi|312112686|ref|YP_003991002.1| glycyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
 gi|311217787|gb|ADP76391.1| glycyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
          Length = 460

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 63/440 (14%), Positives = 141/440 (32%), Gaps = 48/440 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     + +    L +   W  SG   ++   M+   
Sbjct: 32  WDYGPLGTELKNNIKRAWWKKFVQESPYNVGLDAAILMNPKTWEASGHLGNFNDPMIDCK 91

Query: 98  D---RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R+    +     EE   +I       +  +     +  +   +           R+
Sbjct: 92  QCKARHRADKLIESALEEKGIEIVVDG-LPFEKMEELIKEHNIACPE--CGSHDFTNIRQ 148

Query: 155 FLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAE---------- 198
           F +       +T   +   Y        +FV++  +   +  K     A+          
Sbjct: 149 FNLMFKTYQGVTESSANEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIAQIGKSFRNEIT 208

Query: 199 ----SGPIGGDLSHEFIVLADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
               +         E       GE   +    K F    + S     ++I   +   E+ 
Sbjct: 209 PGNFTFRTREFEQMELEFFCKPGEELKWFDYWKQFCKQWLLSLGMKEENIRLRDHTKEEL 268

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           +    AT+D+   K      E   +++R            +YS            + +  
Sbjct: 269 SHYSNATTDI-EYKFPFGWGELWGIASRTDYDLKQH---MEYSGEDFRYIDQETNERYIP 324

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRD 363
                 +GA RV  A +  ++D +          +    ++AP+K ++  +        +
Sbjct: 325 YCIEPSLGADRVTLAFMIDAYDEEELEDGTTRTVMRLHPALAPYKAAVFPLSKK---LAE 381

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               I+A LSK    V +D+ G  IG ++   D +G P  +        D  V ++ R T
Sbjct: 382 GARNIFADLSKH-FMVDYDETG-SIGKRYRRQDEIGTPFCITYDFDSEQDGMVTVRDRDT 439

Query: 424 GIREDMSLEEVINYASHRFS 443
             +  + + ++ ++   +  
Sbjct: 440 MEQVRIPISQLKSFLEEKVQ 459


>gi|297559717|ref|YP_003678691.1| glycyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844165|gb|ADH66185.1| glycyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 462

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 67/431 (15%), Positives = 124/431 (28%), Gaps = 34/431 (7%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +  +NV           R   + +    + + ++W  SG   ++     E  
Sbjct: 35  WDYGPLGVELKNNVKRQWWRSMVQERDDIVGLDSSVILAREVWEASGHVTAFVDPLTECQ 94

Query: 95  RLADRNDKAMIYGPTHEEVMTD---------IFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
               R     +     E+   +               K     P  F  +   +   ++ 
Sbjct: 95  SCHKRFRADHLVEAYEEKHGHEPAEGLAAIACPNCGAKDSFTEPRMFNGLLRTYLGPVQD 154

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+   R    +  +      E S        +  +    R  +        +      
Sbjct: 155 EKGLAYLRPETAQGIFINYKNVEQSARRKVPFGIGQIGKSFRNEITPGNFIFRTREFEQM 214

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              EF V   + E       D             D++       E+ +     T D+   
Sbjct: 215 EM-EFFVKPGSDEEWHQHWIDIRHQWYVDLGIAKDNLRLYEHPQEKLSHYSKRTVDIEYR 273

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             F      +     GI     +   T    S    + F     + +   +     G  R
Sbjct: 274 FNFQGSEWGELE---GIANRTDYDLRTHSEASGVDLSYFDQESNERYIPYVIEPAAGVDR 330

Query: 324 VVAAVIESSHDGKGII------WPDSVAPFKISLINIKA------HDQVCRDACEKIYAR 371
            V   +  +++              +V      L  +KA       +         + AR
Sbjct: 331 AVLTFMLDAYNVDEAPNAKGKLEKRAVMRLDPRLAPVKAAVLPLSRNADLSPKARDLAAR 390

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K   +V +DD G  IG ++   D +G P  V V    + D  V ++ R T  +E +SL
Sbjct: 391 LRKRW-NVEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLEDDAVTVRERDTMSQERVSL 448

Query: 432 EEVINYASHRF 442
           + V  Y   R 
Sbjct: 449 DRVETYLFERL 459


>gi|46446019|ref|YP_007384.1| histidine-tRNA ligase [Candidatus Protochlamydia amoebophila UWE25]
 gi|81697685|sp|Q6ME90|SYH_PARUW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46399660|emb|CAF23109.1| probable histidine-tRNA ligase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 424

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 64/411 (15%), Positives = 131/411 (31%), Gaps = 31/411 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIY 106
             D V   IR+     G  E+  P  +  +L+  S     D   KEM    D+  ++M  
Sbjct: 26  LWDFVERTIRKTVRDYGYQEIRTPLFERTELFQRSVGETSDIISKEMYTFEDKGGRSMSL 85

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +   F  +           + I   FR E        +  +F        + +
Sbjct: 86  RPEGTAPVMRSFIENQLHTIAPLQKLFYIAPMFRYERAQAGRYRQHHQF--GAEAIGNSS 143

Query: 167 PEGSKHSYNKMFVSYLR--------------IFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           PE      + ++  Y R                         ++    P   +LS +   
Sbjct: 144 PEQDAELIDLLYTLYKRLGLQNLSLNINSIGTISCRHTFRQALKDYLKPHLNNLSSDSQN 203

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             +T   ++  SK+  D  I ++     D +  +S +                ++   L 
Sbjct: 204 RFETNPLRILDSKNAQDKQIVADAPSILDFLDEDSQIHFEQLKKLLKQLKIPYQVNPLLV 263

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVI 329
                  + +    +   G + S+     + G     G      +G +G G  R++  +I
Sbjct: 264 RGLDYYNKTVFEVVVGELGAQNSIGGGGRYDGLLRELGGPDLPSIG-FGTGIERIIQTMI 322

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                    I   S     + LI +       +  C  +   L + G     D  G+++G
Sbjct: 323 NQ------GIPLPSPCHPSLFLIPMG---DEAKQLCFTLTHELRQQGIPTQMDFSGKKLG 373

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                AD +     V++G   +   ++E+K   +G +  ++++E+     +
Sbjct: 374 KVLQYADQIESTYVVVIGENELQTQEIELKELASGKKYKLTIDELAPTLKN 424


>gi|58197411|dbj|BAD88636.1| hypothetical protein [Streptococcus suis]
          Length = 119

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 1/99 (1%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  +APF + LI +   D+   +  + I A L   G +V  DD  E++G +F+ +DL+G 
Sbjct: 15  PKELAPFDVHLIPVNVKDEAAMELTQSIEASLVGAGYEVLTDDRNERVGVKFSDSDLIGL 74

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           P++V VG K  +D  VE+K + TG   ++ +++++    
Sbjct: 75  PIRVTVGKK-AADGIVEVKIKGTGDTVEVHVDQLLETLQ 112


>gi|327439656|dbj|BAK16021.1| histidyl-tRNA synthetase [Solibacillus silvestris StLB046]
          Length = 422

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 54/405 (13%), Positives = 112/405 (27%), Gaps = 18/405 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  +IR+   +    E+  P  +S +L+        D   KEM    D+ ++++   
Sbjct: 20  WQYVERVIRDLCEKYRYNEIRTPMFESTELFQRGVGDTTDIVQKEMYTFTDKGNRSLTLR 79

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDL 165
           P              +    + P   Y     FR E +      R R+F+          
Sbjct: 80  PEGTASAVRAYVEHKMFGQADQPVKLYYTGPMFRYERQQAG---RYRQFVQFGVEAIGSA 136

Query: 166 TPEGSKHSYNKMFVSY--LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
            P             Y  L +     + +     ++         E       GE    C
Sbjct: 137 DPAIDAEVMALAMDVYTTLGLSDLKLVINSLGDKDTRDAHRSALIE-HFTPVVGELCSDC 195

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENK 275
                  P+   +   D      +     T     +S  +  K+   L         +  
Sbjct: 196 QSRLEKNPLRILDCKVDAKHPAMATAPALTNYLTDSSAEYFTKVKQYLDVLGISYEVDPN 255

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V          F          S T     G+ + +     G  +  +  A+       
Sbjct: 256 LVRGLDYYNHTAFEIMITGEGFGSITTLCGGGRYNGLVEDIGGPESPGIGFALSIERLLL 315

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +A      + + A  +  +    ++ +     G     D +  ++ +Q   A
Sbjct: 316 ALEAKNIELATGNNLEMYVVAMGEEAKLKAVELVSSFRAKGISADMDYLDRKMKAQMKAA 375

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D       +++G   + +  V +K   TG +  +   +++ Y   
Sbjct: 376 DRANAKFVIVLGESELEEQAVNVKTMETGDQTKVEFGQLVQYVLE 420


>gi|256810410|ref|YP_003127779.1| glycyl-tRNA synthetase [Methanocaldococcus fervens AG86]
 gi|256793610|gb|ACV24279.1| glycyl-tRNA synthetase [Methanocaldococcus fervens AG86]
          Length = 577

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 89/281 (31%), Gaps = 11/281 (3%)

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                 Y            R G       A+               +    +      + 
Sbjct: 304 PNEMAHYAIDCWDAEIYTERFGWIECVGIADRTDYDLRSH---SAHSGVELSIFVELDEE 360

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            +      N ++  +  +     +    Y        ++ F    EN       I+ G  
Sbjct: 361 REIETYEINLNYKVVGKIFKKDTKAIEAYINNLSEKEKEEFVKNIENNGKVIINID-GKE 419

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH----DGKGIIWPDS 343
           F    K  + +    K   G+     +     G  R+   ++E S+    D   +    S
Sbjct: 420 FEI-LKDYVEIKKVKKVIKGEKVIPHVIEPSYGIDRITYCLLEHSYREEEDRVYLDLKPS 478

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP K  ++ +   D       ++I   L +      +DD G  IG ++  AD +G P  
Sbjct: 479 IAPIKAYVLPLVNKDD-MPKIAKEINQMLRESSIIAEYDDSGA-IGRRYMRADEIGVPFC 536

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + V  + + D  V ++ R T  +  + ++E+++Y   +   
Sbjct: 537 ITVDGQTLKDKTVTVRERNTREQIRVKIDELVDYLKEKLKE 577



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 1/107 (0%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G   + PLG    +N+ +  RE+   + G  E+  PT+   ++   SG  D++   ++ 
Sbjct: 30  AGFVDYGPLGCLLKNNIISKFREQYIVKEGFYEIESPTVTPYEVLKASGHVDNFTDPIVE 89

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
             +  +         E V  D     +K    L   +     K   E
Sbjct: 90  CKNCLESFRADHLIEEFVDVDTEGKTLKELDELIKKYNVRCPKCGGE 136


>gi|116513950|ref|YP_812856.1| histidyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|122275280|sp|Q04AV4|SYH_LACDB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|116093265|gb|ABJ58418.1| histidyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 428

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 62/424 (14%), Positives = 129/424 (30%), Gaps = 20/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP      + V    R+   R    E+  P+ ++ +L+  S     D   KEM  
Sbjct: 8   GTVDILPETSGQWEKVEQTARDLFKRANYHEIRTPSFENYELFSRSSGETSDVVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +   +  +         PF  Y I   +R E        R R
Sbjct: 68  FEDKGGRHIALRPEGTAGVVRAYVENKIYGPDYVKPFNVYYIAAMYRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPE---------GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF              G          +Y    + LG   +        +  
Sbjct: 125 EFHQIGVESFGSNGYLADVETILLGHDLLAELGVKNYELHINTLGDSEVRQAYHDALVDY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               +  +  D+           +D     +     +   +   +++ +           
Sbjct: 185 FTPVKDQLSEDSQRRLGKNPLRILDSKAEEDQQFLSEAPKIRDYLDEESKENFNKILASL 244

Query: 265 EKLF-DSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           +KL    + ++  V       G IF F     +L  S +     G+ +++     G    
Sbjct: 245 DKLGVKYVIDDDLVRGLDYYTGVIFEFMVDDPTLWASPSTVLGGGRYNHLVEEFSGPETP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E             +   +     I    +       ++  +L  +G    +D
Sbjct: 305 AVGFGIGEERLMLVLSKQNPEMFEDQGIDFFITNIGEGTDIKAVEVARQLRSLGFSAQYD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY--ASH 440
              +++ +QF  AD +G    V +G+K +++ K+ +K    G +  +   ++ +      
Sbjct: 365 VDQKKLKAQFRKADRVGARYVVTLGAKELAEGKLTVKRLSDGQQFSLEFTDLEDKANLLS 424

Query: 441 RFSN 444
           +   
Sbjct: 425 KIEK 428


>gi|296331700|ref|ZP_06874169.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675342|ref|YP_003867014.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151295|gb|EFG92175.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413586|gb|ADM38705.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 424

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 57/404 (14%), Positives = 112/404 (27%), Gaps = 18/404 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I+R+        E+  P  +  +L+        D   KEM    DR  +++   
Sbjct: 20  WQFVEQIMRDTCRTYQYKEIRTPIFEHTELFARGVGESTDIVQKEMYTFQDRKGRSLTLR 79

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P            + + +    P   Y +   FR E        +  +F ++        
Sbjct: 80  PEGTAAAVRAFNENKLFANPVQPTKLYYVGPMFRYERPQTGRYRQFYQFGIEA--IGSKD 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P             Y +   +     I    +          E +V       + FCS  
Sbjct: 138 PAIDAEVMALAMSIYQKAGLQNVKLVINSLGDQES--RKSYREALVKHFEPRIEEFCSDC 195

Query: 227 FMDFPIPSENTDFDDIIS-----------LNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                                        L  + E+  A +       N+       +  
Sbjct: 196 QSRLHTNPLRILDCKKDRDHELMKTAPSILTYLNEESAAYFEKVKQYLNDLGISYEIDPN 255

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V          F   +      + T     G+   +     G  A  +  A+       
Sbjct: 256 LVRGLDYYNHTAFEIMSNAEGFGAITTLAGGGRYDGLVEQIGGPEAPGIGFAMSIERLLA 315

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   +     I    +  +D    +  +L + G     D   +++  QF  A
Sbjct: 316 AIDAEKRELPVDQGIDCYIVTLGEKAKDYSVSLVYKLREAGISSEIDYENKKMKGQFKTA 375

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           D L      I+G   ++ +K+ +K   TG + +++L+E I+   
Sbjct: 376 DRLNARFIAILGEDELAQNKINVKDAQTGEQIEVALDEFIHVMK 419


>gi|104773942|ref|YP_618922.1| histidyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|123251924|sp|Q1GAG8|SYH_LACDA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|103423023|emb|CAI97709.1| histidyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|325125611|gb|ADY84941.1| Histidyl-tRNA synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 428

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 62/424 (14%), Positives = 129/424 (30%), Gaps = 20/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP      + V    R+   R    E+  P+ ++ +L+  S     D   KEM  
Sbjct: 8   GTVDILPETSGQWEKVEQTARDLFKRANYHEIRTPSFENYELFSRSSGETSDVVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +   +  +         PF  Y I   +R E        R R
Sbjct: 68  FEDKGGRHIALRPEGTAGVVRAYVENKIYGPDYVKPFNVYYIAAMYRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPE---------GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF              G          +Y    + LG   +        +  
Sbjct: 125 EFHQIGVESFGSNGYLADVETILLGHDLLAELGVKNYELHINTLGDSEVRQAYHDALVDY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               +  +  D+           +D     +     +   +   +++ +           
Sbjct: 185 FTPVKDQLSEDSQRRLGKNPLRILDSKAEEDQQFLSEAPKIRDYLDEESKENFNKILASL 244

Query: 265 EKLF-DSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           +KL    + ++  V       G IF F     +L  S +     G+ +++     G    
Sbjct: 245 DKLGVKYVIDDDLVRGLDYYTGVIFEFMVDDPTLWASPSTVLGGGRYNHLVEEFSGPETP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E             +   +     I    +       ++  +L  +G    +D
Sbjct: 305 AVGFGIGEERLMLVLSKQNPEMFEDQGIDFFITNIGEGTDIKAVEVARQLRSLGFSAQYD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY--ASH 440
              +++ +QF  AD +G    V +G+K +++ K+ +K    G +  +   ++ +      
Sbjct: 365 VDQKKLKAQFRKADRVGARYVVTLGAKELAEGKLTVKRLSDGQQFSLEFTDLEDKTNLLS 424

Query: 441 RFSN 444
           +   
Sbjct: 425 KIEK 428


>gi|293376342|ref|ZP_06622579.1| glycine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|292645031|gb|EFF63104.1| glycine--tRNA ligase [Turicibacter sanguinis PC909]
          Length = 457

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 63/435 (14%), Positives = 143/435 (32%), Gaps = 42/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     +      L +   WV SG    +   ++   
Sbjct: 33  WDYGPLGVELKNNVKKAWWKKFIQESPYNVGLDSAILMNPQTWVASGHVGGFSDPLMDCK 92

Query: 98  DRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRS 152
               +     +I     + V        + +Y                 ++R    + ++
Sbjct: 93  VCKSRHRADKLIEDHGDDIVADGWTEEQMMNYIREHNIACPDCGAHDFTDIRQFELMFKT 152

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL-----------GLKSIPMRAESGP 201
              ++ D  S       +       F +  R   +                I     +  
Sbjct: 153 HMGVVSDEKSAVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITPGNFTFR 212

Query: 202 IGGDLSHEFIVLADTGETQVFC--SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                  E       GE   +    K++    + S   + + I       E+ +     T
Sbjct: 213 TREFEQMELEFFCKPGEDAKWYEFWKEYCWNWLVSLGMNPEHIRQREHSPEELSHYSNGT 272

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKGAD-GKDHYVQMGSY 317
           SD+   +      E   V+ R       F           +  ++     + +       
Sbjct: 273 SDI-EYRFPFGWGELWGVANR-----TDFDLKAHMKESGANFEYQDPTTNEKYVPYCIEP 326

Query: 318 GIGAMRVVAAVIESSH---------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            +GA RV  A +  ++           + + +  ++AP+K++++ +        +   ++
Sbjct: 327 SVGADRVTLAFLVDAYAEETLENGETREVLKFHPALAPYKVAVLPLVKK---LNEQALEV 383

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +A LSK    V +D+ G  IG ++   D +G P  V      + D KV ++HR T  +E 
Sbjct: 384 FADLSKH-MMVDYDEAG-TIGKRYRRQDAIGTPFCVTFDYDSLEDKKVTVRHRDTMEQER 441

Query: 429 MSLEEVINYASHRFS 443
           ++++E++ Y + +  
Sbjct: 442 VAIDELVEYITSKIQ 456


>gi|4972787|gb|AAD34790.1|AF136400_4 threonyl-tRNA synthetase [Pseudomonas fluorescens]
          Length = 161

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 58/158 (36%), Gaps = 7/158 (4%)

Query: 289 YFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                  + + A +   D  + H V +    +G+      ++   ++     +P  +AP 
Sbjct: 4   QLDFNLPIRLGAEYVSEDNSRKHPVMLHRAILGSFERFVGILIEHYE---GAFPAWLAPT 60

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  ++NI        D   ++   L++ G     D   E+IG +     LL  P  +++G
Sbjct: 61  QAVVMNITDK---QADFALEVEKTLNQSGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIG 117

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            + V    V ++ R       M + +   + +   S  
Sbjct: 118 DREVEMQTVAVRTREGEDLGSMPVAQFSAFLAQAVSRR 155


>gi|46446958|ref|YP_008323.1| prolyl-tRNA synthetase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81626837|sp|Q6MBK1|SYP_PARUW RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|46400599|emb|CAF24048.1| putative prolyl-tRNA synthetase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 507

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 50/413 (12%), Positives = 122/413 (29%), Gaps = 60/413 (14%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    +N+   + +    TG      P       L  E+   + + KE   +      
Sbjct: 45  PWGYGIWENIQRQLDDRIKETGHENAYFPLFIPLSFLEKEAAHIEGFAKECAVVT----- 99

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
                                 +  L     ++      E                    
Sbjct: 100 ----------------------HHRLEEKDGRLIPAGPLEEPLIVRPTS--------ETI 129

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-RAESGPIGGDLSHEFIVLADTGETQV 221
              +      SY  + +   +  + +  +  P     +        H      +    + 
Sbjct: 130 IGDSFSRWVESYRDLPLLINQWANVVRWEMRPRIFLRTTEFLWQEGHTAHATHEEALQET 189

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                     +    +  +D++++  IV       +        +   +L E      + 
Sbjct: 190 MTM-------LEVYRSFVEDVLAIPVIV----GEKSPGERFPGAENTFTL-EAMMQDRKA 237

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           ++     Y G  ++   +  F   +G+  Y    S+G+   R++ ++I    D  G+  P
Sbjct: 238 LQSCTSHYLGQNFAKGSNIRFSNMEGQLEYAYTTSWGM-TTRLIGSLIMCHGDDDGLRLP 296

Query: 342 DSVAPFKISLINIKAHDQ---VCRDACEKIYARLSK-----VGCDVFWDDMGEQIGSQFA 393
             +A  +I ++ +    +      +  E + A L K         V  D   ++ G +  
Sbjct: 297 PRIAHKQIVIVPVIPKPELEAQVLEYAENLAAELRKQIFYGKPLTVHIDKRDKRGGEKNW 356

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLT--GIREDMSLEEVINYASHRFSN 444
                G PL++ VG + +++  V +  R      ++ +  ++ +  A+    +
Sbjct: 357 EWVKKGVPLRLEVGPRDINEQAVMVARRDQSPKNKQSLPKQQFVQQAASILED 409


>gi|167771139|ref|ZP_02443192.1| hypothetical protein ANACOL_02493 [Anaerotruncus colihominis DSM
           17241]
 gi|167666809|gb|EDS10939.1| hypothetical protein ANACOL_02493 [Anaerotruncus colihominis DSM
           17241]
          Length = 456

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 61/442 (13%), Positives = 133/442 (30%), Gaps = 52/442 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     +      L +  +WV SG    +   ++   
Sbjct: 28  WDYGPLGVEFKNNVKRAWWKKFVQESPYNVGLDSAILMNPQVWVASGHVGGFSDPLMDCK 87

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D   +             D        + N     Y  +   +            R+F +
Sbjct: 88  DCKTRHRADKLIE-----DATGEVADGWSNEQMLAYIREHNIKCPECGGTNFTDIRKFNL 142

Query: 158 KDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMRAESG 200
                  +T +     Y                             ++G           
Sbjct: 143 MFKTFQGVTEDAKSELYLRPETAQGIFVNFMNVQRTTRKKVPFGVCQIGKSFRNEITPGN 202

Query: 201 PIGGDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            I      E     F    DT        + F +  + S     D++   +   E+ +  
Sbjct: 203 FIFRIREFEQMELEFFCKPDTDLEWFQYWRSFCENWLLSLGMTKDNMRLRDHAKEELS-F 261

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y+  +            E   ++ R            ++S      F     + +   + 
Sbjct: 262 YSKATTDIEYLFPFGWGELWGIADRTDYDLGRH---GEHSGKTLDYFDPETNERYVPYVV 318

Query: 316 SYGIGAMRVVAAVIESSHDGKG--------------IIWPDSVAPFKISLINIKAHDQVC 361
              +GA RV  A +  ++D +               +    ++AP+K  ++ +       
Sbjct: 319 EPSLGADRVALAFLCDAYDEEVVGTDAKGKEDVRVVMRLHPALAPYKACVLPLSKK---L 375

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +   KIY  L      V +DD G  IG ++   D +G P+ +    +  +D  V ++ R
Sbjct: 376 AEGAGKIYETL-AKEYMVDYDDAG-SIGKRYRRQDEIGTPVCITYDFESETDGCVTVRDR 433

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            T  +E ++++ + +Y   + +
Sbjct: 434 DTMAQERIAIDSLCDYLKTKIA 455


>gi|168998640|ref|YP_001687908.1| hypothetical protein pK2044_00390 [Klebsiella pneumoniae
           NTUH-K2044]
          Length = 333

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 16/233 (6%)

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E  +   T   +   S    D    + +   +      S+     A Y    +    
Sbjct: 105 GFEEVEIKLSTRPEKRMGSDTDWDRLENALSASLEAQGLQWSVNPGEGAFYGPKLEF--- 161

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            L D++  + +     +++        ++ +   A           V +     G++   
Sbjct: 162 VLRDAIGRDWQCGTLQVDM----NLPDRFDIGYIAE---DGSTKRPVMLHRALFGSLERF 214

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++    +      P  ++P +  ++ I           E++   L + G     D   
Sbjct: 215 TGILL---EHYAGKLPAWLSPVQAVVMTITDK---QHRYAEQVLKALRRKGLRCETDLRN 268

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           E+IG +     L   P  +I+G    + ++V ++ R       + L E  +  
Sbjct: 269 EKIGYKIREQTLARIPFLLIIGDAEENAARVTVRDRTGKCMGTLLLNEAADCI 321


>gi|317133446|ref|YP_004092760.1| glycyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315471425|gb|ADU28029.1| glycyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 459

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 63/432 (14%), Positives = 138/432 (31%), Gaps = 37/432 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     +      L +  +WV +G   ++   ++   
Sbjct: 36  WDYGPLGVEFKNNVKRAWWKKFIQESPYNVGLDSAILMNPQVWVATGHVGNFSDPLMDCK 95

Query: 98  DRNDKAMIYGPTHE----EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           D   +        +          F    +                  ++R    + R+ 
Sbjct: 96  DCKTRHRADKLIEDAAGVSPNGWSFEQMQEYIEQHGIKCPVCGSVHFTDIRSFNLMFRTY 155

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP------------ 201
           + + +DA +       +       F++  R   R     I    +S              
Sbjct: 156 QGVTEDAKAQIYLRPETAQGIFVNFLNVQRTTRRKVPFGIGQIGKSFRNEITPGNFTFRT 215

Query: 202 -IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                +  EF     T     +  KD     + +     D I   +   E+ +  Y+  +
Sbjct: 216 REFEQMELEFFCKPGTDLEWFYYWKDTCKNWLLALGLTEDGIRLRDHEAEELS-FYSKAT 274

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                +      E   ++ R     +      + S      F     + +   +    +G
Sbjct: 275 TDIEFRFPFGWGELWGIADRTDYDLNAH---IRQSGKDLDYFDPETNERYVPYVIEPSLG 331

Query: 321 AMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           A RV  A + +++D + +             ++AP+K +++ +        DA   +Y+ 
Sbjct: 332 ADRVALAFLINAYDEEAVGEKDVRTVLHLHPALAPYKAAVLPLSKK---LGDAALLVYSE 388

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           LSK      +DD G  IG ++   D +G P  +       +D  V ++ R +  +E +S+
Sbjct: 389 LSKS-FPTEYDDAG-SIGKRYRRQDEIGTPFCITYDFDSQNDGCVTVRDRDSMKQERISI 446

Query: 432 EEVINYASHRFS 443
             V  Y      
Sbjct: 447 GAVKQYVLDHLE 458


>gi|325068609|ref|ZP_08127282.1| glycyl-tRNA synthetase [Actinomyces oris K20]
 gi|326773531|ref|ZP_08232814.1| glycine--tRNA ligase [Actinomyces viscosus C505]
 gi|326636761|gb|EGE37664.1| glycine--tRNA ligase [Actinomyces viscosus C505]
          Length = 463

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 59/433 (13%), Positives = 125/433 (28%), Gaps = 37/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL- 96
           + + PLG +  +N+     +   R+    + +    +   + WV SG   ++   ++   
Sbjct: 35  WDYGPLGVELKENIKRQWWQYMVRSRDDVVGLDSSVILPRETWVASGHVGAFTDPLVESL 94

Query: 97  -ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP---------- 145
              +  +A      +         +        P T          E             
Sbjct: 95  HTHKRYRADQLIEDYAARKGLDPENVTLDMVPDPVTGQPGSWTEPREFSGLLKTYLGPVD 154

Query: 146 -RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              G+   R    +  +        +        +  +    R  +        +     
Sbjct: 155 DESGLHYLRPETAQGIFINFANVMSAARKKPPFGIGQVGKSFRNEITPGNFIFRTREFEQ 214

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               EF     T E       D+            D++       E+ +     T D+  
Sbjct: 215 MEL-EFFCEPGTDEEWHQYWIDYRKAWYTDLGISEDNLRLYEHPAEKLSHYSKRTVDLEY 273

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F      +     GI     F   T   +S    + F     +     +     G  
Sbjct: 274 RFGFAGSEWGELE---GIANRTDFDLSTHAEHSGKDMSYFDQTRSERWTPYVIEPSAGLT 330

Query: 323 RVVAAVIESSHDGKGIIWPD-------------SVAPFKISLINIKAHDQVCRDACEKIY 369
           R + A +  ++                       +AP K +++ +   +++     +++ 
Sbjct: 331 RSLMAFLVEAYTEDEAPNTKGGVDKRIVLKLDARIAPVKAAVLPLSRKEELTGP-AKELA 389

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           ARL +   +V +DD G  +G ++   D +G P  +        D  V ++ R T  +E +
Sbjct: 390 ARLRRSW-NVEYDDAGA-VGRRYRRQDEVGTPFCLTYDFDSPEDGAVTVRERDTMTQERI 447

Query: 430 SLEEVINYASHRF 442
            LE V  Y + R 
Sbjct: 448 PLEGVERYLAERL 460


>gi|331268359|ref|YP_004394851.1| glycyl-tRNA synthetase [Clostridium botulinum BKT015925]
 gi|329124909|gb|AEB74854.1| glycyl-tRNA synthetase [Clostridium botulinum BKT015925]
          Length = 463

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/447 (13%), Positives = 140/447 (31%), Gaps = 59/447 (13%)

Query: 30  GMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSA 77
           G I Q S    G+   + + PLG +  +NV     +        E      +    L + 
Sbjct: 18  GFIFQGSEIYGGLANSWDYGPLGVEFKNNVKKSWWKRFI----QESPYNMGLDSSILMNK 73

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD---------IFRSHIKSYRNL 128
           ++WV SG    +   ++   +   +        E +  +              + +Y + 
Sbjct: 74  EVWVASGHVGGFSDPLMDCKECKARFRADKLVEEHLAANGKDDVSADGWTSDELMNYIDE 133

Query: 129 PFTFYQ-IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH- 186
                     K   ++R    + ++ + + +D  S       +       F +  R    
Sbjct: 134 NNIVCPKCGKKNYTDIRRFNLMFKTFQGVTEDTTSEIYLRPETAQGIFVNFKNAQRTSRK 193

Query: 187 -------------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                        R  +        +          F       E   +       F + 
Sbjct: 194 KVPFGIGQIGKSFRNEITPGNFTFRTREFEQMELEFFCKPGTDLEWFHYWKDYCWKFLL- 252

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
            +    ++ +      E+  + Y+  +            E   ++ R            +
Sbjct: 253 -DLGMTEENLRFRDHGEEELSFYSNATSDIEFLFPFGWGELWGIADRTDYDLKKH---ME 308

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSV 344
           +S            + +   +    +GA RV  A +  ++D + +             ++
Sbjct: 309 HSGQELTYLDPTTNEKYVPYVIEPSLGADRVALAFLVDAYDEEELENGDTRTVLRLHPAL 368

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           APFK +++ +        +   ++Y++LSK   ++ +D+ G  IG ++   D +G P  +
Sbjct: 369 APFKAAILPLSKK---LSEKALEVYSKLSKK-FNIDYDEAG-SIGKRYRREDEIGTPYCI 423

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSL 431
            V    + D+ V ++ R    +  +S+
Sbjct: 424 TVDFDTLEDNTVTVRDRDNMTQVRLSI 450


>gi|55980512|ref|YP_143809.1| glycyl-tRNA synthetase [Thermus thermophilus HB8]
 gi|62296700|sp|P56206|SYG_THET8 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|55771925|dbj|BAD70366.1| glycyl-tRNA synthetase [Thermus thermophilus HB8]
          Length = 506

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 71/492 (14%), Positives = 135/492 (27%), Gaps = 77/492 (15%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAII--REEQNRTGAIEMSVPTLQSADL 79
           R G I Q S      +G+Y + PLG +  +N+      R    R     +    L    +
Sbjct: 15  RRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLV 74

Query: 80  WVESGRYDSYGKEMLRL---ADRNDKAMIYGP---------------THEEVMTDIFRSH 121
              SG   ++   M+       R     +                    E +   +    
Sbjct: 75  LHYSGHEATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMM 134

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP-------EGSKHSY 174
               R          L         +   R    + K                  +    
Sbjct: 135 QAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFKTYVGPVEDEASLAYLRPETAQGI 194

Query: 175 NKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLSHEFI---VLADTGETQVFC 223
              F + L    R         G            I      E +        GE + + 
Sbjct: 195 FVNFKNVLDATSRKLPFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWH 254

Query: 224 SKDFMD-FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG- 281
                +      E     + +       +  A YA  +     +    L E + ++ R  
Sbjct: 255 RYWVEERLKWWQEMGLSRENLVPYQQPPEELAHYAKATVDILYRFPHGLEELEGIANRTD 314

Query: 282 IEVG-----------HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            ++G                  ++S    A      GK     +     G  R V A++ 
Sbjct: 315 FDLGSHTKDQEALGITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLA 374

Query: 331 SSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVF 380
            +   + +              +AP K+++I +  +     +  +++ ARL  +G   V 
Sbjct: 375 EAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVL 434

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFV---SDSK------VEIKHRLTGIREDMSL 431
           ++D G  IG  +   D +G P  V V    +    D        V ++ R T  +  + +
Sbjct: 435 YEDTG-NIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHV 493

Query: 432 EEVINYASHRFS 443
           +E+  +   R  
Sbjct: 494 DELEGFLRERLR 505


>gi|51102324|gb|AAT95875.1| prolyl-tRNA synthetase [Trichomonas vaginalis]
          Length = 506

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 68/431 (15%), Positives = 125/431 (29%), Gaps = 74/431 (17%)

Query: 24  KLMLRTGMIHQ--HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +LM+  G++ +    KG+  +   G    + +  +     ++ G      P         
Sbjct: 55  ELMVTAGIVDKRWDIKGMPIFCSYGYTMHNEIMHLFEVAYSKIGVPMTQFPAFIPRSFLE 114

Query: 82  -ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
            E+     +  E       ++  M   PT E  M  +F   +K+  +LP    Q    +R
Sbjct: 115 AEADHVKGFQSECFW----HEDEMCLRPTSETAMYSMFAKWVKTIEDLPVMVQQSCNVYR 170

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E +    ++R RE                                              
Sbjct: 171 YETKGTKPLIRVREI--------------------------------------------- 185

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                  +E      T +  +     F D       T    I  L      W     A  
Sbjct: 186 -----PWNEAHTAHATPQEALDILGKFWDIVHDILTTKL-SIDGLRLRRPDWDRFPGAE- 238

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                  F  + +      R ++     Y G  +S        G           +    
Sbjct: 239 -------FTDVLDVVMPCGRVLQSVGAHYLGQHFSKVFKIQVDGEFSYM------TCIGV 285

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDV 379
           + R +AAV+ +  D KG+I P  +AP ++ ++ I   D         ++   L   G  V
Sbjct: 286 STRCLAAVLSAHGDDKGLIIPTIIAPIQVVIVPILRKDNDALLAKVAEMKKELRAAGIRV 345

Query: 380 FWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             DD      G +F   ++ G PL++ VG + +  ++  +  R    +  + L       
Sbjct: 346 HIDDDTTRSPGEKFYYWEMKGVPLRIEVGPRDLEKNECVLVVRGIEGKYSVHLSAFAQEC 405

Query: 439 SHRFSNNRPVL 449
                     L
Sbjct: 406 QDWLVKYDDAL 416


>gi|312898875|ref|ZP_07758263.1| histidyl-tRNA synthetase [Megasphaera micronuciformis F0359]
 gi|310620037|gb|EFQ03609.1| histidyl-tRNA synthetase [Megasphaera micronuciformis F0359]
          Length = 421

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 66/409 (16%), Positives = 123/409 (30%), Gaps = 9/409 (2%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLAD 98
            +LP        +   IR      G  E+  P  +S +L++       D   KEM    D
Sbjct: 11  DFLPEQTGDWQKLEEKIRSICRIYGFGEVRTPIFESTELFLRGIGETTDVVTKEMYTFED 70

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           R  ++M   P +   +   +  H          FY +   FR +        +  +F ++
Sbjct: 71  RGGRSMTLRPENTASVVRAYLEHKLYGEQKVHKFYYMGPMFRHDRPQAGRYRQFNQFGVE 130

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +  S D   +    +        L +   +   +     +  P+      EF       E
Sbjct: 131 EIGSQDPAVDAEIIAMAFQLFRELGLNDLVLHLNSVGCPKCRPVYRQKLIEFFDGK-RDE 189

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ 272
               C       P+   +   D    L+  V   T         H EK+   L       
Sbjct: 190 LCDDCKSRLDKNPLRVLDCKEDGERMLSEGVPLITDYLCEECAEHFEKVQSYLTGIGISF 249

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      RG++      F   Y+   + +     G+   +     G     +  AV    
Sbjct: 250 EKDPRLVRGLDYYTKTAFEIMYAPLGAQSTVCGGGRYDGLIEEIGGPSVPGIGFAVGMER 309

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                          ++    I A     R     +   L         D  G  +  Q 
Sbjct: 310 LLLTLKEQGLLPPVEELRPAYIVALGDEARKEAFILQQALRAKSLYAEIDTNGRSMKGQM 369

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             A+ +     VI+G   ++  + +I++  T  +E ++L +V+ Y   +
Sbjct: 370 KAANKINADFTVIIGEDELAQGQAQIRNMETKEQETVALGDVVEYIESK 418


>gi|221054768|ref|XP_002258523.1| prolyl-t-rna synthase [Plasmodium knowlesi strain H]
 gi|193808592|emb|CAQ39295.1| prolyl-t-rna synthase, putative [Plasmodium knowlesi strain H]
          Length = 552

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 89/452 (19%), Positives = 151/452 (33%), Gaps = 122/452 (26%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
             ++ + AS +L+ R   I     G+Y+ LPLG K+++ +   +     R  +  + +  
Sbjct: 100 EKKNGDKAS-ELLQRANYIKDV-NGLYNLLPLGYKSIEKLIHFLNIHLKRVNSHGLFMSI 157

Query: 74  LQSADLWVESGRYDSYGKE---------------------MLRLADRNDKAMIYGPTHEE 112
           LQ+   W  S R   Y  E                     M +    +D  ++     E+
Sbjct: 158 LQAKKWWNISDRSKLYSDEFLYVYKQKQQKGDMSKVNETVMTKKKMEDDGLILSPTCEEQ 217

Query: 113 VMTDIF--RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
            +  I    +     ++LP   +Q   KFR+E R    + +S+EFLMKD YSF       
Sbjct: 218 AICLINQVYNENIPAKSLPLLIHQFNYKFRNEKRLEKTLFKSKEFLMKDGYSFHSNDICL 277

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
             +Y+     Y +IF  L L     +            + +   ++ E QV C       
Sbjct: 278 NETYDSYKECYGKIFSDLKLPFKVTK--------KRKMDKMNALESHEFQVLCRDGKYK- 328

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
                                                               E  HIF  
Sbjct: 329 ----------------------------------------------------EAAHIFKL 336

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
           G  YS  +   +     + + + MGSYGIG  R++  +++S +D  GI  P+ +APF + 
Sbjct: 337 GDYYSKKLGIKYLNKRNEKNNILMGSYGIGIYRLLYFLVDSFYDDDGIRLPEQIAPFSVY 396

Query: 351 LINIKA-------------HDQVCRDACEK-----------------------IYARLSK 374
           LI                       DA E                        +Y     
Sbjct: 397 LIQTNQRSKYSATKVAKIVKMAQVTDAVEAMDAPNMATPPLNSNDVEYVLTLWLYNTFKN 456

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
              D+++DD    +  +    DL+G P ++I+
Sbjct: 457 SNVDIYYDDTDLHLSRKLKNCDLIGVPNRIII 488


>gi|2664208|emb|CAA10903.1| Glycyl-tRNA synthetase [Thermus thermophilus]
          Length = 506

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 72/494 (14%), Positives = 137/494 (27%), Gaps = 81/494 (16%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAII--REEQNRTGAIEMSVPTLQSADL 79
           R G I Q S      +G+Y + PLG +  +N+      R    R     +    L    +
Sbjct: 15  RRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLV 74

Query: 80  WVESGRYDSYGKEMLRL---ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
              SG   ++   M+       R     +     EEV+  +         NL        
Sbjct: 75  LHYSGHEATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLTGPWRVEEENL--HALVQA 132

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           +    E                        P      +  +            L+    R
Sbjct: 133 MMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAYLRPETAR 192

Query: 197 AES--------------------------------GPIGGDLSHEFI---VLADTGETQV 221
           A S                                  I      E +        GE + 
Sbjct: 193 ASSSTSRTVLDATSRKLGFGIAQSARPSRNEITPRNFIFRVREFEQMEIEYFVRPGEDEY 252

Query: 222 FCSKDFMDFPIPSENTDF-DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
           +      +     +      + +       +  A YA  +     +    L E + ++ R
Sbjct: 253 WHRYWVEERLKWWQRMGLSRENLVPYQQPPEELAHYAKATVDILYRFPHGLEELEGIANR 312

Query: 281 G-IEVG-----------HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
              ++G                  ++S    A      GK     +     G  R V A+
Sbjct: 313 TDFDLGSHTKDQEALGITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLAL 372

Query: 329 IESSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-D 378
           +  +   + +              +AP K+++I +  +     +  +++ ARL  +G   
Sbjct: 373 LAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGR 432

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV---SDSK------VEIKHRLTGIREDM 429
           V ++D G  IG  +   D +G P  V V    +    D        V ++ R T  +  +
Sbjct: 433 VLYEDTG-NIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRL 491

Query: 430 SLEEVINYASHRFS 443
            ++E+  +   R  
Sbjct: 492 HVDELEGFLRERLR 505


>gi|296394225|ref|YP_003659109.1| glycyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
 gi|296181372|gb|ADG98278.1| glycyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
          Length = 465

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/436 (13%), Positives = 135/436 (30%), Gaps = 42/436 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           + + PLG +  +N+     +    +R   + +    +    +WV SG  + +   ++   
Sbjct: 37  WDYGPLGVELKENIKRQWWQSVVTSRDDVVGLDSSIVLPRQVWVASGHVEVFNDPLVESL 96

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           +  +  +A      +E        + +   R+              E R    ++++   
Sbjct: 97  ITHKRYRADHLVEAYEAKHGHPPPNGLADIRDPETGEPGQWT----EPRDFNMMLKTYLG 152

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLS 207
            ++           +       F + +    R         G            I     
Sbjct: 153 PIESEDGLHYLRPETAQGIFVNFANVVTTARRKPPFGIAQIGKSFRNEITPGNFIFRTRE 212

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIP-----SENTDFDDIISLNSIVEQWTAPYAATSDV 262
            E + +    E Q                      D +++       E+ +     T D+
Sbjct: 213 FEQMEMEFFVEPQTAREWHQHWIDTRLQWYVDLGIDPENLRLYEHPKEKLSHYSDRTVDI 272

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIG 320
                F      +     G+     F   T  K+S    + +  A  + +   +     G
Sbjct: 273 EYRFRFQGSEWGELE---GVANRTDFDLSTHAKHSGADLSYYDQAQDRRYVPYVIEPAAG 329

Query: 321 AMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEK 367
             R + A +  ++                       +AP K +++ +   D     A + 
Sbjct: 330 LTRSLMAFLVDAYAEDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPL-QKDGGLVAAAKD 388

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + ARL K   ++ +D+    IG ++   D +G P  V V  + + D  V I+ R T  ++
Sbjct: 389 LAARLRKRW-NIDYDETQA-IGRRYRRQDEIGTPFCVTVDFESLEDQAVTIRERDTMSQQ 446

Query: 428 DMSLEEVINYASHRFS 443
            ++L++V  +   R  
Sbjct: 447 RVALDQVAAFLFERLD 462


>gi|302534311|ref|ZP_07286653.1| glycyl-tRNA synthetase [Streptomyces sp. C]
 gi|302443206|gb|EFL15022.1| glycyl-tRNA synthetase [Streptomyces sp. C]
          Length = 460

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/440 (14%), Positives = 128/440 (29%), Gaps = 52/440 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     +     R   + +    + + ++WV SG   ++   +    
Sbjct: 33  WDYGPLGVELKENIKRQWWKAMVTGREDVVGLDSSVILAPEVWVASGHVATFSDPLTECT 92

Query: 98  --------DRNDKAMIYGPT-------------HEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
                   D  ++A                   H  V          S            
Sbjct: 93  SCHKRQRADHLEEAYEAKHGRLPENGLADINCPHCGVKGQFTEPKQFSGMLETHLGPTQD 152

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
              +  LRP         F M    S    P G                           
Sbjct: 153 TGSKAYLRPETAQGIFTNFAMVQTSSRKKPPFGIAQMGKSFRNEITPGN----FIFRTRE 208

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
            E   +      EF V     +                     +++   +   E+ +   
Sbjct: 209 FEQMEM------EFFVKPGEDDQWQEYWMQERWNWYRGLGLREENMRWYDHPAEKLSHYS 262

Query: 257 AATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             T+D+     F      E + V+ R           +  S      +     + +   +
Sbjct: 263 KRTADIEYRFNFGGSEFSELEGVANRTDYDLKAH---SAASGTDLVYYDQEAQEKYTPYV 319

Query: 315 GSYGIGAMRVVAAVIESSH------DGKGIIWPDSVAPFKISLINIK------AHDQVCR 362
                G  R + A +  ++      + KG +   +V  F   L  +K      + +    
Sbjct: 320 IEPAAGVNRAMLAFMLDAYVEDEAPNAKGAMEKRTVMRFDPRLAPVKVAVLPLSRNANLS 379

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              + + A L K   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R 
Sbjct: 380 PKAKGLAADLRKNW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRERD 437

Query: 423 TGIREDMSLEEVINYASHRF 442
           T  +E +SL+++ +Y   R 
Sbjct: 438 TMKQERVSLDQIQSYLGSRL 457


>gi|253999424|ref|YP_003051487.1| histidyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|253986103|gb|ACT50960.1| histidyl-tRNA synthetase [Methylovorus sp. SIP3-4]
          Length = 418

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/425 (13%), Positives = 119/425 (28%), Gaps = 38/425 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y  LP        +    R+   + G   + +P ++  DL++ S     D   KEM  
Sbjct: 10  GFYDILPEQTALWQKLEDTARQVLGQYGYRNIRMPIVEPTDLFIRSVGEHTDIVEKEMYS 69

Query: 96  LADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D  +   +   P            H  +Y   P   + +   FR E   +    R R+
Sbjct: 70  WVDALNGDKLTLRPEGTAGCVRAVVEHSLTYNG-PQRLWYMGPMFRHENVQKG---RQRQ 125

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F      +F             +       +  LGL  + ++  +     + +    VL 
Sbjct: 126 FHQIGVEAFGYAQPEVDAEQIMLLARL---WRALGLTDVELQLNTIGDAAERAEYRQVLI 182

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-----YAATSDVHNEKLF- 268
              E       +     + +      D  +         AP         S  H + +  
Sbjct: 183 AYFEQHADLLDEDAKRRLHTNPLRILDSKNPRMQAMIEGAPRLLDTLGGESRAHFDAVCA 242

Query: 269 ------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                         L        R +        G++ ++     +     +       +
Sbjct: 243 LLNAANIPFVLNTRLVRGLDYYNRTVFEWVTTRLGSQGTIAGGGRYDTLVERLGGDATPA 302

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            G G       ++   +        ++       L+N+    +       ++  +L   G
Sbjct: 303 CGFGIGLERVFLLMQEYGI------EAAQGLDGYLVNLG---EQAERLAPQVAEQLRDAG 353

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVI 435
             V     G    SQ   AD  G    +I+G       ++ +K     G ++ + L + I
Sbjct: 354 ISVALHTGGGSFKSQMKKADRSGARFALILGDDEAQAGQITLKPMLGGGEQQRLDLLQAI 413

Query: 436 NYASH 440
            +   
Sbjct: 414 QHLKE 418


>gi|38639683|ref|NP_943452.1| theronyl-tRNA synthetase [Klebsiella pneumoniae]
 gi|38016781|gb|AAR07802.1| theronyl-tRNA synthetase [Klebsiella pneumoniae]
 gi|238549656|dbj|BAH66007.1| theronyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 345

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 16/233 (6%)

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E  +   T   +   S    D    + +   +      S+     A Y    +    
Sbjct: 117 GFEEVEIKLSTRPEKRMGSDTDWDRLENALSASLEAQGLQWSVNPGEGAFYGPKLEF--- 173

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            L D++  + +     +++        ++ +   A           V +     G++   
Sbjct: 174 VLRDAIGRDWQCGTLQVDM----NLPDRFDIGYIAE---DGSTKRPVMLHRALFGSLERF 226

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++    +      P  ++P +  ++ I           E++   L + G     D   
Sbjct: 227 TGILL---EHYAGKLPAWLSPVQAVVMTITDK---QHRYAEQVLKALRRKGLRCETDLRN 280

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           E+IG +     L   P  +I+G    + ++V ++ R       + L E  +  
Sbjct: 281 EKIGYKIREQTLARIPFLLIIGDAEENAARVTVRDRTGKCMGTLLLNEAADCI 333


>gi|297616960|ref|YP_003702119.1| histidyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144797|gb|ADI01554.1| histidyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
          Length = 421

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/418 (14%), Positives = 117/418 (27%), Gaps = 19/418 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y  LP   +    +  ++RE     G  E+  P  +  +L+        D   KEM  
Sbjct: 8   GTYDILPDESRKWQWLEGLLRETAELYGFREIRTPVFEHTELFQRGVGETTDIVQKEMYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            AD+  +++   P         F  H    +  P  +Y +   FR +        +  +F
Sbjct: 68  FADKARRSLTLRPEGTASCARAFIQHQIYNQPQPVKWYYLGPMFRYDRPQAGRYRQFHQF 127

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                      P         M         + GL    +R  S             L  
Sbjct: 128 --GAEVFGSNNPFVDAELIVMMVDMVF----KAGLPQYDLRLNSVGCETCRPSYRQALVS 181

Query: 216 -----TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                  E    C K     P+   +          + + +    +      H   +  S
Sbjct: 182 FLQPIKKELCQDCRKRIELNPLRVLDCKNQGCREAVTGLPRVADYWCNDCRQHFTAVTQS 241

Query: 271 LPENK------RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           L   +          RG++      F        +    G  G+ +++     G     +
Sbjct: 242 LDRYEVSYTVDDRLVRGLDYYTNTAFELLVPGIGAQNAIGGGGRYNHLVREVGGPDVPGI 301

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             A+                       + I    +    + ++    L + G     D M
Sbjct: 302 GFAIGLERLLSGVEEAGALPVFSPDIEVYIAVTGREYEASADQALRELRRAGLKADRDYM 361

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G  + +Q   AD L  P+ V++G    +     I+   T  + ++   ++I+      
Sbjct: 362 GRSLKAQMRQADRLQVPVVVLIGEDEATRGTYTIRRMQTKEQYEIGQADLIDEVRKIL 419


>gi|160915037|ref|ZP_02077250.1| hypothetical protein EUBDOL_01045 [Eubacterium dolichum DSM 3991]
 gi|158432836|gb|EDP11125.1| hypothetical protein EUBDOL_01045 [Eubacterium dolichum DSM 3991]
          Length = 461

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/444 (13%), Positives = 132/444 (29%), Gaps = 58/444 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + + PLG +  DN+              E      +    L + ++WV SG    +   +
Sbjct: 35  WDFGPLGIELKDNIKRAWWRRFI----QESPYNTGIQSAILMNPNVWVASGHVGGFSDPL 90

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           +   +            E+  +        S   +     +  LK              R
Sbjct: 91  MDCKEC-KTRYRADQLIEDATSGEVSVEGWSNEQMKAFIDEHDLKCPK--CGAHNFTDIR 147

Query: 154 EFLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIPMR 196
           +F +       +  +     Y                   M         ++G       
Sbjct: 148 QFNLMFKTFQGVLEDAKNAIYLRPETAQGMFVNFKNVQRTMRKKLPFGIGQIGKSFRNEI 207

Query: 197 AESGPIGGDLSHEFIV---LADTG---ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                I      E +      + G   +   +  +  M F    +     + +       
Sbjct: 208 TPGNFIFRTREFEQMELEFFCEPGTDLDWYHYYKEFCMKFLT--DLGIQREHLRFRDHTP 265

Query: 251 QWTAPY--AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-G 307
           +  A Y        +N        E   ++ R           +K S      +      
Sbjct: 266 EELAFYSKGTCDIEYNFHSQIGWGELWGIADRTDYDLKQHMETSKKS----LEYLDPTTN 321

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQ 359
           + +        +G  R++ AV+  ++D +         + +   +AP K  ++ +     
Sbjct: 322 EKYIPYCIEPSVGVERMLLAVMCDAYDEEQLENDTRIVMHFHPYLAPIKACVMPLSKK-- 379

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              D   ++Y ++     +  +DD G  IG ++   D +G P  V +  +  +D  V ++
Sbjct: 380 -LGDKAMEVYGKI-AHVANCDYDDAG-SIGKRYRRQDAIGTPFCVTIDFETENDGCVTVR 436

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
           HR +  +E +++E++ +Y   R  
Sbjct: 437 HRDSMEQERVAIEDLASYIEERIK 460


>gi|297588571|ref|ZP_06947214.1| glycine--tRNA ligase [Finegoldia magna ATCC 53516]
 gi|297573944|gb|EFH92665.1| glycine--tRNA ligase [Finegoldia magna ATCC 53516]
          Length = 469

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/439 (12%), Positives = 132/439 (30%), Gaps = 44/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG +  +N+     ++  +     + +    L +   WV SG    +   ++   
Sbjct: 39  WDYGSLGVEIKNNIKRAWWKKFIQQSPYNVGLDAAILMNPQTWVVSGHVGGFSDPLIDCK 98

Query: 98  --------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP---R 146
                   D+  +       +EE+     +S  +    +     +     +         
Sbjct: 99  ECKSRFRADKLIEDYFMNEKNEEITGLDGKSEQELLDIIEKEDIKCPECGKHNFTDIRKF 158

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAE 198
             + ++ + + +D  S       +       F +  R   +         G         
Sbjct: 159 NLMFKTFQGVTEDNKSEIYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRNEITP 218

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE----NTDFDDIISLNSIVEQWTA 254
              I      E + L    E                E        ++ + L    ++  +
Sbjct: 219 GNFIFRTREFEQMELEFFCEPGTDLEWFEYWRNFCREFLLNLGMKEENLRLRDHEQEELS 278

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQ 313
            Y+  +            E   ++ R          G+         +      + +   
Sbjct: 279 FYSKATTDFEYLFPFGWGELWGIADRTDYDLSKHSEGS----GEKLEYMDPSTNEKYIPY 334

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDA 364
                +G  R+  + +  +++ + +             ++A +K++++ +        D 
Sbjct: 335 CIEPSVGVDRMFLSFLCDAYEEEQLEDNSTRTVLKIHPALAAYKVAVLPLTKK---LNDK 391

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +IY  L        +DD G  IG ++   D  G P  V +    + D+ V I+ R T 
Sbjct: 392 AMEIYNEL-AKNFMTHFDDAG-SIGKRYRREDEAGTPYCVTIDFDTLEDNTVTIRDRDTM 449

Query: 425 IREDMSLEEVINYASHRFS 443
            ++ M++EE+I + +    
Sbjct: 450 EQKRMTVEEIIEFVNKEME 468


>gi|282555136|gb|ADA82660.1| ProS [Candidatus Blochmannia nearcticus]
          Length = 64

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 40/64 (62%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          MR S+Y L  L+E P +    SH+LMLR G+I Q S GIYSWLP G + L  +  IIREE
Sbjct: 1  MRVSQYLLATLKEIPSNCTAISHRLMLRAGLIRQVSSGIYSWLPTGXRVLRKIKNIIREE 60

Query: 61 QNRT 64
            + 
Sbjct: 61 MGKI 64


>gi|253681235|ref|ZP_04862033.1| glycine--tRNA ligase [Clostridium botulinum D str. 1873]
 gi|253562473|gb|EES91924.1| glycine--tRNA ligase [Clostridium botulinum D str. 1873]
          Length = 463

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/443 (12%), Positives = 133/443 (30%), Gaps = 51/443 (11%)

Query: 30  GMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWV 81
           G I Q S    G+   + + PLG +  +NV     +   +  A  +      L + ++WV
Sbjct: 18  GFIFQGSEIYGGLANSWDYGPLGVEFKNNVKKSWWKRFIQESAYNIGLDSSILMNKEVWV 77

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFR 140
            SG    +   ++   +   +        E +  +         + +     Y  +    
Sbjct: 78  ASGHVGGFSDPLMDCKECKARFRADKLVEEHLADNGKDDVSADGWTSEELMNYIDENNIV 137

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLR 183
                +      R F +       +T + +   Y                          
Sbjct: 138 CPKCGKKNYTDIRRFNLMFKTFQGVTEDTTSEIYLRPETAQGIFVNFKNAQRTSRKKVPF 197

Query: 184 IFHRLGLKSIPMR------AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
              ++G               +          F       E   +       F +  +  
Sbjct: 198 GIGQIGKSFRNEITPGNFTFRTREFEQMELEFFCKPGTDLEWFHYWKDYCWKFLL--DLG 255

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             ++ +      E+  + Y+  +            E   ++ R            ++S  
Sbjct: 256 MTEENLRFRDHGEEELSFYSNATSDIEFLFPFGWGELWGIADRTDYDLKKH---MEHSGQ 312

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFK 348
                     + +   +    +GA RV  A +  ++D + +             ++APFK
Sbjct: 313 ELTYLDPTTNEKYVPYVIEPSLGADRVALAFLVDAYDEEELENGDTRTVLHLHPALAPFK 372

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            +++ +        +   ++Y +LSK   ++ +D+ G  IG ++   D +G P  + V  
Sbjct: 373 AAILPLSKK---LSEKALEVYGKLSKK-FNIDYDEAG-SIGKRYRREDEIGTPYCITVDF 427

Query: 409 KFVSDSKVEIKHRLTGIREDMSL 431
             + D+ V ++ R    +  + +
Sbjct: 428 DTLQDNTVTVRDRDNMTQVRLKI 450


>gi|189219701|ref|YP_001940342.1| Prolyl-tRNA synthetase [Methylacidiphilum infernorum V4]
 gi|189186559|gb|ACD83744.1| Prolyl-tRNA synthetase [Methylacidiphilum infernorum V4]
          Length = 512

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/418 (14%), Positives = 130/418 (31%), Gaps = 57/418 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +     +TG   +  P     + L  E+   + + KE    
Sbjct: 41  GCMIIKPWGYALWERIQKELDLRIKKTGHKNVYFPLFIPLEYLQKEAEHVEGFAKE---- 96

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                           V+T          +  P +                         
Sbjct: 97  --------------CAVVTHHRLEKGVDGKLHPASPLTEP-------------------- 122

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +      ++++   SY  +   +   +  +R E  P     + EF+     
Sbjct: 123 ---LVIRPTSETIIGAAFSRWIQSYRDLPLLINQWANVVRWEMRPRLFLRTTEFL--WQE 177

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T     ++     +      +++ +     +         +          +L E   
Sbjct: 178 GHTVHASPEEARQEALSIVKL-YEEFMRGYLALPVIVGEKPESERFPGADNTYTL-EAMV 235

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++VG   + G  +S   +  F   +GK  +    S+G+ + R++  +I +  D  
Sbjct: 236 QDRKAVQVGTSHFLGQNFSKANNIRFLDKEGKMQFAWTSSWGV-STRLIGTLIMAHGDDN 294

Query: 337 GIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGC-----DVFWDDMGEQI 388
           G++ P +VAP ++ ++ +   ++      D   +I   + K+        V  D      
Sbjct: 295 GLVLPPTVAPLQVVILPLVKKEEDKTKILDFAHQIAGEIEKIDFAGEKLRVEVDKREMGG 354

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT--GIREDMSLEEVINYASHRFSN 444
           G +       G PL+V +G + VS   + +K R      RE  + E  +       ++
Sbjct: 355 GVKSWEWIKKGVPLRVEIGPQEVSSRLLTVKRRDKELKEREQFTFEGFLERLPALLAD 412


>gi|301056404|ref|YP_003794615.1| glycyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300378573|gb|ADK07477.1| glycyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 458

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/439 (12%), Positives = 134/439 (30%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 31  WDYGPLGIELKNNVKKAWWKKFIQESPYNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 90

Query: 98  DRN---------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
                       + A+        V    F       +           +   E+R    
Sbjct: 91  KCKARHRADKLIEDALDAKGIETVVDGLTFDQMADLMKEHEVKCPDCGSEEFTEIRQFNL 150

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIP 194
           + ++ + + + + +       +       F +  R                 R  +    
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E+  +
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMTEESMRLRDHGEEELS 268

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     K      E   V++R       F              +      + +  
Sbjct: 269 HYSNATTDIEFKFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 323

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 324 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 380

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 381 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 438

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 439 EQVRMPISELKGFLEKKIQ 457


>gi|312128271|ref|YP_003993145.1| histidyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311778290|gb|ADQ07776.1| histidyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 421

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 126/422 (29%), Gaps = 27/422 (6%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEM 93
           P G K            V    RE     G  E+  PT +  +L+        D   KEM
Sbjct: 6   PKGTKDVLPEESYMWQYVENKFREVCKLYGYQEVRFPTFEYTELFQRGVGETTDIVQKEM 65

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
               D+  +++   P        +F  H  + R +P  FY I   FR E           
Sbjct: 66  YTFLDKGGRSITLRPEGTASTARLFIEHGFASRPMPQRFYYIISAFRYENTQGGRFREFH 125

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F +++  S   +P       +  +  +  I       +I       P+      + +  
Sbjct: 126 QFGIENFGSS--SPVTDAEVISLAYNFFTSIGLDNITVNINSIGC--PVCRKEYVKNLKE 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV---HNEKLFDS 270
             +  +Q  C+                       + +    P     D    H E +   
Sbjct: 182 YFSANSQKLCTTCHQRLDKNPMRILDCKEEGCKLVAKDAPKPIDYLCDDCKSHFESVKTY 241

Query: 271 LPENKRV------SARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           L   K +        RG++     +F      S    A   G    +   Q+G   I  +
Sbjct: 242 LDSAKVLYKVDPFIVRGLDYYTKTVFEIVATVSDKELAICGGGRYDNLIEQIGGNSIPGI 301

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                V       +      +        +      +       +I +RL   G     +
Sbjct: 302 GFAIGVERLLMLLEQNGLLPAKPRVPEVFVATVG--ENSLKKAFEIASRLRFEGISTIIE 359

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +MG  + SQ   AD +G    +I+G   ++    +I++  T   E + +E V  Y   + 
Sbjct: 360 EMGRSLKSQMKYADKIGCQFSIIIGDDEITKGVCKIRNMKTSSEEIVEIENVCQYLKEKL 419

Query: 443 SN 444
             
Sbjct: 420 QK 421


>gi|321312284|ref|YP_004204571.1| histidyl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|291485165|dbj|BAI86240.1| histidyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
 gi|320018558|gb|ADV93544.1| histidyl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 424

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/404 (14%), Positives = 111/404 (27%), Gaps = 18/404 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I+R+        E+  P  +  +L+        D   KEM    DR  +++   
Sbjct: 20  WQYVEQIMRDTCRTYQYKEIRTPIFEHTELFARGVGESTDIVQKEMYTFEDRKGRSLTLR 79

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P            + + +    P   Y +   FR E        +  +F ++        
Sbjct: 80  PEGTAAAVRAFNENKLFANPVQPTKLYYVGPMFRYERPQTGRYRQFYQFGIEA--IGSKD 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P             Y +         I    +          E +V       + FCS  
Sbjct: 138 PAIDAEVMALAMSIYEKAGLENVKLVINSLGDQDS--RKSYREALVKHFEPRIEEFCSDC 195

Query: 227 FMDFPIPSENTDFDDIIS-----------LNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                                        L  + E+  A +       N+       +  
Sbjct: 196 QSRLHTNPLRILDCKKDRDHELMKSAPSILTYLNEESAAYFDKVKQYLNDLGISYEIDPN 255

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V          F   +      + T     G+   +     G  A  +  A+       
Sbjct: 256 LVRGLDYYNHTAFEIMSNAEGFGAITTLAGGGRYDGLVEQIGGPEAPGIGFAMSIERLLA 315

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   K     I    +  +D    +  +L + G     D   +++  QF  A
Sbjct: 316 AIDAEKRELPVDKGIDCYIVTLGEKAKDYSVSLVYKLREAGISSEIDYENKKMKGQFKTA 375

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           D L      I+G   ++ +K+ +K   TG + +++L+E I+   
Sbjct: 376 DRLNARFIAILGEDELAQNKINVKDAQTGEQIEVALDEFIHVMK 419


>gi|313201446|ref|YP_004040104.1| histidyl-tRNA synthetase [Methylovorus sp. MP688]
 gi|312440762|gb|ADQ84868.1| histidyl-tRNA synthetase [Methylovorus sp. MP688]
          Length = 418

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/425 (13%), Positives = 120/425 (28%), Gaps = 38/425 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y  LP        +    R+   + G   + +P ++  DL++ S     D   KEM  
Sbjct: 10  GFYDILPEQTALWQKLEDTARQVLGQYGYRNIRMPIVEPTDLFIRSVGEHTDIVEKEMYS 69

Query: 96  LADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D  +   +   P            H  +Y   P   + +   FR E   +    R R+
Sbjct: 70  WVDALNGDKLTLRPEGTAGCVRAVVEHSLTYNG-PQRLWYMGPMFRHENVQKG---RQRQ 125

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F      +F             +       +  LGL  + ++  +     + +    VL 
Sbjct: 126 FHQIGVEAFGYAQPEVDAEQIMLLARL---WRALGLTDVELQLNTIGDAAERAEYRQVLI 182

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-----YAATSDVHNEKLF- 268
              E       +     + +      D  +         AP         S  H + +  
Sbjct: 183 AYFEQHADLLDEDAKRRLHTNPLRILDSKNPRMQAMIEGAPRLLDTLGGESRAHFDAVCA 242

Query: 269 ------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                         L        R +        G++ ++     +     +       +
Sbjct: 243 LLKAANIPFVLNTRLVRGLDYYNRTVFEWVTTRLGSQGTIAGGGRYDTLVERLGGDATPA 302

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            G G       ++   +        ++       L+N+    +       ++  +L   G
Sbjct: 303 CGFGIGLERVFLLMQEYGI------EATQGLDGYLVNLG---EQAERLAPQVAEQLRDAG 353

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVI 435
             V     G    SQ   AD  G    +I+G +     ++ +K     G ++ + L + I
Sbjct: 354 ISVALHTGGGSFKSQMKKADRSGARFALILGDEEAQAGQITLKPMLGGGEQQRLDLLQAI 413

Query: 436 NYASH 440
            +   
Sbjct: 414 QHLKE 418


>gi|56421965|ref|YP_149283.1| glycyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|81675673|sp|Q5KUC1|SYG_GEOKA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|56381807|dbj|BAD77715.1| glycyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
          Length = 460

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/437 (13%), Positives = 135/437 (30%), Gaps = 42/437 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     + +    L +   W  SG   ++   M+   
Sbjct: 32  WDYGPLGVELKNNIKRAWWKKFVQESPYNVGLDAAILMNPRTWEASGHLGNFNDPMVDCK 91

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             +                R+F +
Sbjct: 92  QCKARHRADKLIEKALEEKGIEMIVDGLPLAKMDELIKEYDIACPECGSRDFTNVRQFNL 151

Query: 158 KDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--- 208
                  +T   +   Y        +FV++  +   +  K     A+ G    +      
Sbjct: 152 MFKTYQGVTESSANEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIAQIGKSFRNEITPGN 211

Query: 209 -------------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                        EF              K F    + S     D+I   +   E+ +  
Sbjct: 212 FTFRTREFEQMELEFFCKPGEELQWFDYWKQFCKDWLLSLGMKEDNIRLRDHAKEELSHY 271

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             AT+D+     F    E   +++R            +YS            + +     
Sbjct: 272 SNATTDIEYHFPF-GWGELWGIASRTDYDLKRH---MEYSGEDFHYLDQETNERYIPYCI 327

Query: 316 SYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACE 366
              +GA RV  A +  ++D +          +    ++AP+K +++ +        D   
Sbjct: 328 EPSLGADRVTLAFMIDAYDEEELEDGTTRTVMHLHPALAPYKAAVLPLSKK---LADGAH 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +IY  L K    V +D+ G  IG ++   D +G P  +    +   D +V ++ R T  +
Sbjct: 385 RIYEELVKH-FMVDYDETG-SIGKRYRRQDEIGTPFCITYDFESEQDGQVTVRDRDTMEQ 442

Query: 427 EDMSLEEVINYASHRFS 443
             + + E+  +   + +
Sbjct: 443 VRLPIGELKAFLEEKIA 459


>gi|311069241|ref|YP_003974164.1| histidyl-tRNA synthetase [Bacillus atrophaeus 1942]
 gi|310869758|gb|ADP33233.1| histidyl-tRNA synthetase [Bacillus atrophaeus 1942]
          Length = 424

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/404 (13%), Positives = 111/404 (27%), Gaps = 18/404 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I+R+        E+  P  +  +L+        D   KEM    DR  +++   
Sbjct: 20  WQYVEQIMRDTCRTYQYKEIRTPIFEHTELFARGVGESTDIVQKEMYTFQDRKGRSLTLR 79

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P            + + +    P   Y +   FR E        +  +F ++        
Sbjct: 80  PEGTAAAVRAFTENKLFANPVQPTKLYYVGPMFRYERPQTGRFRQFYQFGIEA--IGSKD 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P             Y R   +     +    +          E +V         FCS  
Sbjct: 138 PAIDAEVIALAMSIYQRAGLKNVKLVLNSLGDKES--RTSYREALVKHFEPRIDEFCSDC 195

Query: 227 FMDFPIPSENTDFDDIIS-----------LNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                                        L  + E+  A +        E       +  
Sbjct: 196 QSRLYTNPLRILDCKKDRDHELMKTAPSILEYLNEESKAYFQKVQQYVTELGIPFEIDPN 255

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V          F   +      + T     G+   +     G  A  +  A+       
Sbjct: 256 LVRGLDYYNHTAFEIMSNAEGFGAITTLAGGGRYDGLVEQIGGPEAPGIGFAMSIERLLA 315

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   +     I    +  +D    +  +L + G     D   +++  QF  A
Sbjct: 316 AIDAEKTELPVSQAIDCYIVTLGEKAKDYSVSLVYKLREAGISSEIDYENKKMKGQFKTA 375

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           D L      I+G   ++ +++ +K   TG + +++L+E+I +  
Sbjct: 376 DRLNARFIAILGEDELAQNRINVKDAKTGEQLEVALDELIRFMK 419


>gi|317128223|ref|YP_004094505.1| histidyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315473171|gb|ADU29774.1| histidyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 423

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/405 (13%), Positives = 119/405 (29%), Gaps = 16/405 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +     E        E+  P  +  +++        D   KEM    DR  +++   
Sbjct: 20  WQYIEQRAHELCRTYNYKEIRTPMFEQTEVFARGVGDTTDIVQKEMYTFDDRGGRSLTLR 79

Query: 108 PTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   +  + +    + P   Y I   FR E      + +  +F ++   S    
Sbjct: 80  PEGTASVVRSYVENKMHGLPDQPVKLYYIGPMFRYERPQSGRMRQFVQFGVEALGS--DD 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCS 224
           P             Y  +        I    +  S     +   +        E    C 
Sbjct: 138 PAIDAEVIALAMDLYKGLGLTDLKLVINSLGDKDSRTAHRNALID-HFKPRIEEFCSDCQ 196

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENKR 276
                 P+   +   D    L             +S  + E++   L         +   
Sbjct: 197 ARLEKNPLRILDCKKDHGHELMDTAPSILDYLNESSKAYFEQVQRYLTAIGIEFVVDATL 256

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V          F          + T     G+ + +     G     +  A+        
Sbjct: 257 VRGLDYYNNTAFEIMIDGKGFGAITTLSGGGRYNGLVEEFGGSDVPGIGFALSIERLLMA 316

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                  +   +     +    +  ++   K+   L K G  V  D + +++ +QF  AD
Sbjct: 317 LEAQGIELPIQEGIDAYLVVMGEEPKNVAPKLLHDLRKQGLTVDTDYLNKKMKAQFKAAD 376

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            L     +I+G + + +  V +K   TG +E++ ++E+++Y   +
Sbjct: 377 RLNASFAIILGEQELENDSVMVKALSTGEQEEVKVQELVSYLKSK 421


>gi|15828922|ref|NP_326282.1| glycyl-tRNA synthetase [Mycoplasma pulmonis UAB CTIP]
 gi|14089865|emb|CAC13624.1| GLYCYL-TRNA SYNTHETASE (GLYCINE--TRNA LIGASE) (GLYRS) [Mycoplasma
           pulmonis]
          Length = 453

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/440 (13%), Positives = 148/440 (33%), Gaps = 45/440 (10%)

Query: 30  GMIHQHS---KGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWV 81
           G I Q S    G+   + + P+G      +    R+     +  ++E+    L + ++W 
Sbjct: 20  GFIFQGSEIYGGLANTWDYGPVGFLLKQKIEEFWRKFFILKQDNSVEIDSKILMNPNVWK 79

Query: 82  ESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            SG   ++   ++       +     +I     E  +  +    I ++       Y+   
Sbjct: 80  ASGHVSNFSDPLIENKVNGKRYRADKIIEENFPEVNVQSMSEKEIHAFIVEHVKEYENSK 139

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------RLG 189
               E+R    + ++ + +++D+ +       +       F + LR           ++G
Sbjct: 140 TSWSEIRKFQLMFQTSQGVVEDSKNLVYLRPETAQGIFINFKNILRSTRAKLPLAVGQVG 199

Query: 190 LKSIPMRAESGPIGGDLSHE------FIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                       I      E      F +  +  E          +F +     + + I 
Sbjct: 200 KSFRNEVTPGNFIFRTREFEQMELEVFCLPEEAEEIYQKYINLCWEFLLE-LGINKNSIR 258

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                 E+       T D +         E   ++ RG          ++       ++ 
Sbjct: 259 KRIHQKEELAHYSKGTCD-YEFNFPFGWGELLGIANRGDFDLKNHSHFSQ----EDLSYL 313

Query: 304 GA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINI 354
              D +     +    IG  R++ A++  ++  + +             +AP++ +++ +
Sbjct: 314 NPLDNQRIIPYVIEPSIGLDRLMLALLCDAYHEESVENETRVVLKLDKKIAPYRFAVLPL 373

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +  +++Y  L  +   V +D+ G  IG ++   D +G    + +  + + D 
Sbjct: 374 VKK---LSEKAKELYKNLVDLNLMVSYDESG-SIGKRYRRQDAIGTYECITIDYQSLEDD 429

Query: 415 KVEIKHRLTGIREDMSLEEV 434
              I++R +  ++ +S EE+
Sbjct: 430 SFTIRNRDSMEQKRLSFEEL 449


>gi|205374219|ref|ZP_03227018.1| histidyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 421

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/406 (13%), Positives = 116/406 (28%), Gaps = 18/406 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  + ++        E+  P  + A+L+        D   KEM    DR D+ +   
Sbjct: 20  WQYIEEVAKDICRNFQYKEIRTPIFEHAELFTRGVGDTTDIVQKEMYTFKDRGDRDLSLR 79

Query: 108 PTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   F  + +  + N P   +     FR E        +  +F ++   S    
Sbjct: 80  PEGTAAVVRSFVENKMFGHANQPVKLFYSGPMFRYERPQAGRYRQFVQFGVEALGSE--D 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF---IVLADTGETQVFC 223
           P       +     Y  +  +     +    ++         E           E    C
Sbjct: 138 PAIDAEVISLAMSLYQAVGLKKLKLIVNSLGDNES--RVAHREALIAHFKPRIEEFCTDC 195

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENK 275
                  P+   +   D    L +            S  + +K+   L         +  
Sbjct: 196 QTRLEKNPLRILDCKKDRDHELMATAPSILDYLNEESRSYFKKVQSYLSLMDVEFVVDPT 255

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V          F   +      + T     G+ + +     G     +  A+       
Sbjct: 256 LVRGLDYYNHTAFEIMSDAEGFGAITTLCGGGRYNGLVEEIGGPSTPGIGFALSIERLLA 315

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +         + A     +D   KI + L K G     D +  ++ +QF  A
Sbjct: 316 AVDAEEVELPVESKVDCYVVALGDQAKDYSVKIVSDLRKAGLSAERDYLDRKLKAQFKAA 375

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D +      ++G + +S   + +K   +G +E + + +++     R
Sbjct: 376 DRVQARYVAVLGEEELSSGTINLKDMESGEQESIEISKLVEAIQER 421


>gi|46198483|ref|YP_004150.1| glycyl-tRNA synthetase [Thermus thermophilus HB27]
 gi|59798551|sp|Q72L85|SYG_THET2 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|46196105|gb|AAS80523.1| glycyl-tRNA synthetase [Thermus thermophilus HB27]
          Length = 506

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 73/492 (14%), Positives = 136/492 (27%), Gaps = 77/492 (15%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAII--REEQNRTGAIEMSVPTLQSADL 79
           R G I Q S      +G+Y + PLG +  +N+      R    R     +    L    +
Sbjct: 15  RRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLV 74

Query: 80  WVESGRYDSYGKEMLRL---ADRNDKAMIYGPTHEEV---------------MTDIFRSH 121
              SG   ++   M+       R     +     EEV                  +    
Sbjct: 75  LHYSGHEATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEGNLHALVQAMM 134

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP-------EGSKHSY 174
               R          L         +   R    + K                  +    
Sbjct: 135 QAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFKTYVGPVEDEAALAYLRPETAQGI 194

Query: 175 NKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLSHEFI---VLADTGETQVFC 223
              F + L    R         G            I      E +        GE + + 
Sbjct: 195 FVNFKNVLDATSRKLPFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWH 254

Query: 224 SKDFMD-FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG- 281
                +      E     + +       +  A YA  +     +    L E + ++ R  
Sbjct: 255 RYWVEERLKWWQEMGLSRENLVPYEQPPEELAHYAKATVDILYRFPHGLEELEGIANRTD 314

Query: 282 IEVG-----------HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            ++G                  ++S    A      GK     +     G  R V A++ 
Sbjct: 315 FDLGSHTKDQEALGITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLA 374

Query: 331 SSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVF 380
            +   + +              +AP K+++I +  +     +  +++ ARL  +G   V 
Sbjct: 375 EAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVL 434

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFV---SDSK------VEIKHRLTGIREDMSL 431
           ++D G  IG  +   D +G P  V V    +    D        V ++ R T  +  + +
Sbjct: 435 YEDTG-NIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHV 493

Query: 432 EEVINYASHRFS 443
           +E+  +   R  
Sbjct: 494 DELEGFLRERLK 505


>gi|269926946|ref|YP_003323569.1| glycyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790606|gb|ACZ42747.1| glycyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 457

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/443 (11%), Positives = 127/443 (28%), Gaps = 38/443 (8%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G +   S         + + P+G +   N+         Q R   + +   T+    +
Sbjct: 23  RRGFVFPSSEIYGGWSAFWDYGPVGVEMKKNIKKAWWHDVVQIRHDVVGIDAATIMHPLV 82

Query: 80  WVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS---------YRN 127
           W  SG  +++     +      R     + G    +           S            
Sbjct: 83  WKASGHLENFNDLMVDCRNCKQRFRADHLPGYEENKRAGKENPIEGLSCPNCGSKDLTPP 142

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
            PF           E       +R      +  +        +        ++ +   +R
Sbjct: 143 RPFNTMFKTFVGPVENEAAVAYLR--PETAQAIFVQFSNVLMTSRKKLPFGIAQIGRAYR 200

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
             +        S          F+   +  +   +     +D+ +        + + L  
Sbjct: 201 NEITPGNFIFRSREFEQMELEYFVRPGEDDKWYDYWRNFAIDWFV--SLGVSRERLRLKE 258

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             ++  + Y+  +            E   ++ R              S      +     
Sbjct: 259 HAKEDLSHYSKATTDLEYLYPFGWNELWGIANRTDYDLKAH---MAVSGQQLTYYDEETK 315

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGII--------WPDSVAPFKISLINIKAHDQ 359
                 +    +G  R     +  ++  +           +   +AP K++++ +    +
Sbjct: 316 SHIVPYVIEPSLGVDRSFLVFLLDAYHEEPDNEGTRVVLRFHPRIAPVKVAVLPLSRK-E 374

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  +I  RL+ V     +D+ G  IG ++   D +G P  V V  + + D+ V I+
Sbjct: 375 PLIKIAWEIRDRLADVYV-TDYDETG-SIGRRYRRQDEIGTPYCVTVDFQTLEDNAVTIR 432

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
            R T  ++ +S+ E+ +    + 
Sbjct: 433 DRDTMQQDRVSISELESVLKDKL 455


>gi|300361855|ref|ZP_07058032.1| histidine--tRNA ligase [Lactobacillus gasseri JV-V03]
 gi|300354474|gb|EFJ70345.1| histidine--tRNA ligase [Lactobacillus gasseri JV-V03]
          Length = 428

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 137/424 (32%), Gaps = 20/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    + + V  I R    R    E+  P+ ++ +++  S     D   KEM  
Sbjct: 8   GTVDILPADSGSWEKVETIARNFFKRANYREIRTPSFENYEVFSRSSGESSDVVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +   +  +     ++  PF  Y I   FR E        R R
Sbjct: 68  FNDKGGRHIALRPEGTAGVVRAYVENKLYGPDVVKPFNVYYIDNTFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSF-DLTPEGSKHSYNKMFV--------SYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF   +P     +              +Y    + LG   +        +  
Sbjct: 125 EFHQIGVESFGSNSPLADVETIMMGHDLLAELGVKNYELHINTLGNAQVRKDYHDALVNY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               +  +  D+           +D     +     D   +   +++ +     T     
Sbjct: 185 FTPLKDQLSEDSQRRLSMNPLRILDSKADEDKQFLPDAPRIVDYLDEDSKKNFETITDML 244

Query: 265 EKL-FDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           E+L  + + ++  V       G IF F     +L  SAT     G+ +++     G    
Sbjct: 245 EQLGINYVLDDDLVRGLDYYTGVIFEFMVEDKNLWESATTILGGGRYNHLVEEFDGPETP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E            ++   +     I    +       +I   L K G    +D
Sbjct: 305 AVGFGIGEERLMLVLKEQNPALFEDEGIDFFITNIGEGTEMKAVEIARSLRKQGFKAQYD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV--INYASH 440
              +++  QF  AD +     + +G+K + +  + IK    G   D+SLE++  +     
Sbjct: 365 VDQKKLKQQFRKADRVHAKFVITLGAKELENGVLNIKRLADGKTLDLSLEDLNDMKSVME 424

Query: 441 RFSN 444
           +  +
Sbjct: 425 KIED 428


>gi|194335210|ref|YP_002017004.1| glycyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307687|gb|ACF42387.1| glycyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 491

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/475 (13%), Positives = 132/475 (27%), Gaps = 57/475 (12%)

Query: 18  AEIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM-- 69
            ++ S  L  R G I   S         + + PLG +   N+  +      R     +  
Sbjct: 21  HKLVS--LAKRRGFIFPSSEIYEGLSSCFDYGPLGSEMKRNIKELWWNSMTRR-HQNIVG 77

Query: 70  -SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM-------------- 114
                + +  +W  SG   S+   M+       +        E  +              
Sbjct: 78  LDASIMMNPRVWEASGHVASFNDPMIDDKT-TKRRYRADHLIENHIEKLRRDGKEEELLR 136

Query: 115 ----TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG--------VMRSREFLMKDAYS 162
                +       S R L        +K +D     +            +   +   +  
Sbjct: 137 VQSAYEAVAGAEDSNRALYDIIIAEGIKAQDTGSGDWTEVRQFNLMFQCNMGAVADKSNI 196

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
             L PE ++  +            +     +   +A    I        +V  +  E Q 
Sbjct: 197 VYLRPETAQGIFVNFHNVRESSRMKVPFGIAQIGKAFRNEIVKGNFIFRMVEFEQMEMQY 256

Query: 222 FCSKDFMDFPIPS--ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           F           +  E        +L    E+    Y      H   L   +        
Sbjct: 257 FVKPGTQAEAFEAWREERFAWYTSALGLRKEKL-HWYKHDKLAHYADLAYDIKFEFPFGI 315

Query: 280 RGIEVGHI---FYF-GTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
             IE  H    F     +     +  +      + +   +     G  R+  A++  ++ 
Sbjct: 316 EEIEGIHSRTDFDLKQHQEYSGKNMEYIDQLTNERYLPYVVETSAGCDRLFLALLADAYT 375

Query: 335 GKGIIWPDSVA-PFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
              +   + V       +  IK             +    +   LS     V +DD G  
Sbjct: 376 EDTVDGDERVVLKLSPKVAPIKAAVLPLMKKCGMGEMASLLREELSAAHL-VQYDDAG-S 433

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           IG ++   D +G P  + V  + + ++ V +++R T  +E + +  V  + + + 
Sbjct: 434 IGKRYRRQDEIGTPFCITVDHQSLEENSVTVRYRDTATQERIEISRVREFLASKL 488


>gi|149184542|ref|ZP_01862860.1| prolyl-tRNA synthetase [Erythrobacter sp. SD-21]
 gi|148831862|gb|EDL50295.1| prolyl-tRNA synthetase [Erythrobacter sp. SD-21]
          Length = 513

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/411 (14%), Positives = 122/411 (29%), Gaps = 87/411 (21%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P G    + +  ++ +    TG      P       +  E+   + + KEM  +
Sbjct: 37  GCMVIRPWGFGIWERMQRLLDDRIKATGHENAYFPIFIPLSNFEREAEHVEGFAKEMAVV 96

Query: 97  ADRN-----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
                                ++ ++  PT E ++ D     I+S+R+LP    Q     
Sbjct: 97  THHRLIAGKDGGLVPDPEAKLEEPLVVRPTSETIIGDAMARWIQSWRDLPLKLNQWANVV 156

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E+R R  +                +    +  +           H L +  +      
Sbjct: 157 RWEMRTRMFLR--------------TSEFLWQEGHTAHADEVEAKEHTLRMLEVYR---- 198

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                              E+     +       E++       
Sbjct: 199 -------------------------------AFADEDLALAVVPGEKPENERFPGAVETW 227

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                        E      + ++ G   Y GT ++      ++  +G + +    S+G+
Sbjct: 228 -----------SIEAMMQDGKALQAGTSHYLGTNFAKASGIKYQNKEGGETFAHTTSWGV 276

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVG 376
            + R+V  VI +  D  G+  P  +AP ++ ++ +   K  D    + CE + A L+   
Sbjct: 277 -STRMVGGVIMTHGDDDGLRLPPKIAPQQVVILPMLRDKPEDDALIEYCEALRATLASQQ 335

Query: 377 C-----DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                  V  D    +   +       G P+ V VG + + +  V +  R 
Sbjct: 336 VLGEPLRVLLDTRPGKAAQKRWDYVRKGAPIIVEVGGRDMENGVVSMLRRD 386


>gi|82753710|ref|XP_727786.1| prolyl-tRNA synthetase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483805|gb|EAA19351.1| prolyl-tRNA synthetase-related [Plasmodium yoelii yoelii]
          Length = 583

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/415 (17%), Positives = 145/415 (34%), Gaps = 53/415 (12%)

Query: 24  KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           +L+ R   I +   G+Y+ LPLG + ++ +   I     +  +  + +  LQ   LW  S
Sbjct: 140 ELLFRANYIKEI-NGLYNMLPLGMRVINKIKDFINNYLEKINSHSVFLSILQPKRLWNIS 198

Query: 84  GR------------------YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            R                   D+   E+++    +D  ++     E  +T I   +  + 
Sbjct: 199 DRSKLYSEEFLYVYKQKQQKVDTDLGEIIKKKYEDDGNILSPTCEEIALTLINEVYNLNA 258

Query: 126 --RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
             +N P   +Q   KFR+E R    + +S+EFLMKD YSF    +     Y      Y  
Sbjct: 259 TEKNFPLLIHQYNYKFRNEKRLEKSLFKSKEFLMKDGYSFHANKKCMDEIYEIYKECYKN 318

Query: 184 IFHRLGLKS-IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM-DFPIPSENTDFDD 241
           IF++LGL   I  + +   +    SHE+ +L   G+ +       + D+     N ++ +
Sbjct: 319 IFNKLGLTYRIIKKRKKDKMNALESHEYQILCRDGKFKEGAHIFKLGDYYSKKLNINYLN 378

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             +    +  +   Y    +     L D+  +   +               + +      
Sbjct: 379 KKNEKKNI--YMGSYGIGINRLLYFLIDNFYDENGI-----------KLPNQIAPFSIYL 425

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            +      +  +  +  +  +R       ++     +   D      I            
Sbjct: 426 IQTNQKSKYSSEKVNKIVNELRKEIINDNNTTLYNSLNSNDIEYILTIW----------- 474

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +Y  L +   D ++D+    +  +    DL+G   +VI+  K     K+
Sbjct: 475 ------LYTILKENDIDTYYDNTDLHLSRKLKNCDLIGASNRVIINLKSDEKKKI 523


>gi|205373424|ref|ZP_03226228.1| prolyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 84

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +   E +Y +L   G +V  DD  E+ G +F  +DL+G P++V VG +  S+  VE K 
Sbjct: 4   QKKLGEDLYNQLKDQGLEVLLDDRIERAGVKFNDSDLIGIPVRVTVGKQ-ASEGNVECKD 62

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R TG  +D+S+EE+ +Y +   
Sbjct: 63  RRTGESKDVSIEELSSYINQLL 84


>gi|325956619|ref|YP_004292031.1| histidyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|325333184|gb|ADZ07092.1| histidyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|327183445|gb|AEA31892.1| histidyl-tRNA synthetase [Lactobacillus amylovorus GRL 1118]
          Length = 428

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 68/412 (16%), Positives = 123/412 (29%), Gaps = 18/412 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    +   V    R   NR    E+  P+ ++ +++  S     +   K+M  
Sbjct: 8   GTVDILPEQSGSWQKVEETARNFFNRANYREIRTPSFENYEIFSRSSGDSSEIVEKQMYD 67

Query: 96  LADRNDKAMIYGPTHEEV--MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P          +           PF  + ++  FR E        R R
Sbjct: 68  FNDKGGRHIALRPEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           EF      SF  +   +      M    L        +       +  +  D     +  
Sbjct: 125 EFHQIGVESFGSSNPLADVQTIMMGHDLLAELGVKNYQLHINTLGNEQVRKDYHDALVNY 184

Query: 214 AD--TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL---- 267
                 E      +   D P+   ++  D          +        S  + E +    
Sbjct: 185 FTPVKDELSEDSQRRLRDNPLRILDSKDDRDKKFLPDAPKIRDFLDDDSKQNFESILKML 244

Query: 268 ----FDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                D + ++  V       G IF F     SL  SAT     G+  ++     G    
Sbjct: 245 DQLGIDYVIDDDLVRGLDYYTGVIFEFMVEDKSLWESATTILGGGRYDHLVEEFNGPATP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E            ++   +     I            +I   L K G +  +D
Sbjct: 305 AVGFGIGEERLMLVLEKQNPALFENRGIDFFITNIGDGTAQKAIEITRSLRKQGFEADFD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +++ +QF  AD       + +G K + +  + IK    G   D+SLE++
Sbjct: 365 VNQKKLKAQFKKADRDHAKYVITLGEKELENGVLNIKRLADGKTIDLSLEDI 416


>gi|315038168|ref|YP_004031736.1| histidyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
 gi|312276301|gb|ADQ58941.1| histidyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
          Length = 428

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 68/412 (16%), Positives = 123/412 (29%), Gaps = 18/412 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    +   V    R   NR    E+  P+ ++ +++  S     +   K+M  
Sbjct: 8   GTVDILPEQSGSWQKVEETARNFFNRANYREIRTPSFENYEIFSRSSGDSSEIVEKQMYD 67

Query: 96  LADRNDKAMIYGPTHEEV--MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P          +           PF  + ++  FR E        R R
Sbjct: 68  FNDKGGRHIALRPEGTAGVVRAYVEDKMYAPEVVKPFNVFYMESTFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           EF      SF  +   +      M    L        +       +  +  D     +  
Sbjct: 125 EFHQVGVESFGSSNPLADVQTIMMGHDLLAELGVKNYQLHINTLGNEQVRKDYHDALVNY 184

Query: 214 AD--TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL---- 267
                 E      +   D P+   ++  D          +        S  + E +    
Sbjct: 185 FTPVKDELSEDSQRRLRDNPLRILDSKDDRDKKFLPDAPKIRDFLDDDSKQNFESILKML 244

Query: 268 ----FDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                D + ++  V       G IF F     SL  SAT     G+  ++     G    
Sbjct: 245 DQLGIDYVIDDDLVRGLDYYTGVIFEFMVEDKSLWESATTILGGGRYDHLVEEFNGPATP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E            ++   +     I            +I   L K G +  +D
Sbjct: 305 AVGFGIGEERLMLVLEKQNPALFENRGIDFFITNIGDGTAQKAIEITRSLRKQGFEADFD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +++ +QF  AD       + +G K + +  + IK    G   D+SLE++
Sbjct: 365 VNQKKLKAQFKKADRDHAKYVITLGEKELENGVLNIKRLADGKTIDLSLEDI 416


>gi|12045105|ref|NP_072916.1| glycyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|1351155|sp|P47493|SYG_MYCGE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|3844849|gb|AAC71471.1| glycyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|166079054|gb|ABY79672.1| glycyl-tRNA synthetase [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 446

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/439 (12%), Positives = 139/439 (31%), Gaps = 33/439 (7%)

Query: 24  KLMLRTGMIHQHS---KGI---YSWLPLGQKALDNVNA-----IIREEQNRTGAIEMSVP 72
           + + + G + Q S    G+   + + PLG      +        I+   N+   + +  P
Sbjct: 12  QFLKQHGFVFQSSEIYNGLNNSWDFGPLGAVLKQQIKQALYNFFIK---NKADVLLVETP 68

Query: 73  TLQSADLWVESGRYDSYGKEMLRLA--------DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
            + S  +W  SG   ++   ++           D+ +  +           +    H ++
Sbjct: 69  IILSELVWKASGHLANFVDTLVDCKSCKYRFRVDQINAEIKAKKDWNSFKVNCPNCHNQN 128

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           +  +       Q +    +     ++  R    + ++        +K   N  F      
Sbjct: 129 WSEVRDFNLLFQTEIGV-VNNDKRLVFLRPETAQGSFINFKNILQAKKR-NLPFAIAQFG 186

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                  +                E+    D   +        ++  + +      +++ 
Sbjct: 187 KSFRNEITPGNFLFRTREFEQFEIEWFCKPDDANSLFEKQLIMVEQFLQTVLKINPELLK 246

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
            +   +   A YA  +          L E   ++ RG           ++S    + F  
Sbjct: 247 KHEYDQSELAHYAKKTTDFLFNFPHGLKELWGLANRGDFDLKQHQ---EFSKKSMSFFDS 303

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS-----VAPFKISLINIKAHDQ 359
              +     +    +G  R+  A+I SS+  + I   +              I +     
Sbjct: 304 ELNQHFLPFIIEPAVGIERLFYALIVSSYRREIINEEEREVLSLPFDLCPEQIIVLPLVN 363

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
             +     ++  L+K    V ++  G  IG ++  AD +G    V    + + D+ V I+
Sbjct: 364 KLKKEAFSVFETLAKTRWRVCFETTG-SIGKRYRKADAIGIKYAVTFDFESLEDNAVTIR 422

Query: 420 HRLTGIREDMSLEEVINYA 438
            R T +++ ++++E+  + 
Sbjct: 423 DRDTLVQQRIAIKELPQWF 441


>gi|255024220|ref|ZP_05296206.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-208]
          Length = 279

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L T  + +  +G+  WLP G      +   I +++ R G
Sbjct: 190 FIQMQKEAKERDHRKLGKELDLFTNSV-EVGQGLPLWLPKGATIRRVIERYIVDKEERLG 248

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
              +  P + + +L+  SG +D Y   M  
Sbjct: 249 YNHVYTPIMANVELYKTSGHWDHYDDGMFP 278


>gi|237734561|ref|ZP_04565042.1| histidyl-tRNA synthetase [Mollicutes bacterium D7]
 gi|229382381|gb|EEO32472.1| histidyl-tRNA synthetase [Coprobacillus sp. D7]
          Length = 425

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/427 (14%), Positives = 124/427 (29%), Gaps = 21/427 (4%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+++  +G    LP        +  +IR         E+  P  +  +L+  +     D 
Sbjct: 1   MMYKAPRGTVDILPEKSAKWQTLEQLIRTICANYNVKEVRTPIFEHTELFTRAVGDTTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM   AD+  +++   P     +      + + S  +     Y I   FR E     
Sbjct: 61  VSKEMYTFADKKGRSITLRPEGTAGVARAYVENKMFSNPDKISKLYYIGPMFRYERPQNG 120

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F                     M V+ +      G+K        G    D  
Sbjct: 121 ---RQRQFHQFGVEMIGYESPYLDVECMTMAVTLVEALGLQGVKLHINTLGDGD-SRDAY 176

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI-----------ISLNSIVEQWTAPY 256
            E +           C      +           +            +++ + E   A +
Sbjct: 177 REALKAHFAPYLDDLCQDCKNRYEANPLRILDCKVDHNHPAMANVPKTVDYLSEAAKAHF 236

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
               ++ ++   + + +   V         +F      S           G         
Sbjct: 237 TKVCELLDDLEIEYVVDTNLVRGLDYYCHTVFEV---ISDDPRLGAGATVGGGGRYNGLV 293

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             +G             +   I   + +   +   + +       RD   +I A L   G
Sbjct: 294 QELGGPEAPGVGFAFGMERLLIAMDEELEEPEGLDVYVMPMGDEARDLAVQITAMLRANG 353

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V  D  G  + +QF   D L     +I+G + ++D  V IK   +  ++ + +E ++ 
Sbjct: 354 FSVDMDYQGRSLKAQFKTVDRLNSHFAMIIGDQEIADEVVNIKCTHSKTQDIVPIENIVA 413

Query: 437 YASHRFS 443
           Y  +   
Sbjct: 414 YIENHME 420


>gi|167756851|ref|ZP_02428978.1| hypothetical protein CLORAM_02400 [Clostridium ramosum DSM 1402]
 gi|167703026|gb|EDS17605.1| hypothetical protein CLORAM_02400 [Clostridium ramosum DSM 1402]
          Length = 425

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/427 (14%), Positives = 124/427 (29%), Gaps = 21/427 (4%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+++  +G    LP        +  +IR         E+  P  +  +L+  +     D 
Sbjct: 1   MMYKAPRGTVDILPEKSAKWQTLEQLIRTICANYNVKEVRTPIFEHTELFTRAVGDTTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM   AD+  +++   P     +      + + S  +     Y I   FR E     
Sbjct: 61  VSKEMYTFADKKGRSITLRPEGTAGVARAYVENKMFSNPDKISKLYYIGPMFRYERPQNG 120

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F                     M V+ +      G+K        G    D  
Sbjct: 121 ---RQRQFHQFGVEMIGYESPYLDVECMTMAVTLVEALGLQGVKLHINTLGDGD-SRDAY 176

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI-----------ISLNSIVEQWTAPY 256
            E +           C      +           +            +++ + E   A +
Sbjct: 177 REALKAHFAPYLDDLCQDCKNRYEANPLRILDCKVDHNHPAMANAPKTVDYLSEAAKAHF 236

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
               ++ ++   + + +   V         +F      S           G         
Sbjct: 237 TKVCELLDDLEIEYVVDTNLVRGLDYYCHTVFEV---ISDDPRLGAGATVGGGGRYNGLV 293

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             +G             +   I   + +   +   + +       RD   +I A L   G
Sbjct: 294 QELGGPEAPGVGFAFGMERLLIAMDEELEEPEGLDVYVMPMGDEARDLAVQITAMLRANG 353

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V  D  G  + +QF   D L     +I+G + ++D  V IK   +  ++ + +E ++ 
Sbjct: 354 FSVDMDYQGRSLKAQFKTVDRLNSHFAMIIGDQEIADEVVNIKCTHSKTQDIVPIENIVA 413

Query: 437 YASHRFS 443
           Y  +   
Sbjct: 414 YIENHME 420


>gi|123434302|ref|XP_001308783.1| Anticodon binding domain containing protein [Trichomonas vaginalis
           G3]
 gi|121890480|gb|EAX95853.1| Anticodon binding domain containing protein [Trichomonas vaginalis
           G3]
          Length = 513

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 67/427 (15%), Positives = 124/427 (29%), Gaps = 74/427 (17%)

Query: 24  KLMLRTGMIHQ--HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           +LM+  G++ +    KG+  +   G    + +  +     ++ G      P         
Sbjct: 62  ELMVTAGIVDKRWDIKGMPIFCSYGYTMHNEIMHLFEVAYSKIGVPMTQFPAFIPRSFLE 121

Query: 82  -ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
            E+     +  E       ++  M   PT E  M  +F   +K+  +LP    Q    +R
Sbjct: 122 AEADHVKGFQSECFW----HEDEMCLRPTSETAMYSMFAKWVKTIEDLPVMVQQSCNVYR 177

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E +    ++R RE                                              
Sbjct: 178 YETKGTKPLIRVREI--------------------------------------------- 192

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                  +E      T +  +     F D       T    I  L      W     A  
Sbjct: 193 -----PWNEAHTAHATPQEALDILGKFWDIVHDILTTKL-SIDGLRLRRPDWDRFPGAE- 245

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                  F  + +      R ++     Y G  +S        G           +    
Sbjct: 246 -------FTDVLDVVMPCGRVLQSVGAHYLGQHFSKVFKIQVDGEFSYM------TCIGV 292

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDV 379
           + R +AAV+ +  D KG+I P  +AP ++ ++ I   D         ++   L   G  V
Sbjct: 293 STRCLAAVLSAHGDDKGLIIPTIIAPIQVVIVPILRKDNDALLAKVAEMKKELRAAGIRV 352

Query: 380 FWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             DD      G +F   ++ G PL++ VG + +  ++  +  R    +  + L       
Sbjct: 353 HIDDDTTRSPGEKFYYWEMKGVPLRIEVGPRDLEKNECVLVVRGIEGKYSVHLSAFAQEC 412

Query: 439 SHRFSNN 445
                  
Sbjct: 413 QDWLVKY 419


>gi|221118771|ref|XP_002157095.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 204

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 86/214 (40%), Gaps = 20/214 (9%)

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
             +  +D      +     A Y    D+   ++ D+L    + +   ++    F    ++
Sbjct: 2   LESSLNDFGDPWELNPGDGAFYGPKIDI---QIRDALRRYHQCATIQLD----FQLPERF 54

Query: 295 SLPMSATFKGADGKDHYVQ--MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
               + T+   +G D      +    +G++  + A++    +  G  WP  ++P +  +I
Sbjct: 55  ----NLTYVSGEGDDQKRPVIIHRAILGSVERMIAILT---ENYGGKWPFWLSPIQAVVI 107

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +        +  +K++  L     DV  D  GE +  +   A L+ +   ++VG K ++
Sbjct: 108 PVSNK---FDEYAQKVHRFLQDFRVDVNLD-AGETLNKKIRNAQLMHYNFILVVGDKEMT 163

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            + V ++ R   +  + SLE V+   +   ++ +
Sbjct: 164 SNTVNVRTRDNKVHGEKSLETVLARFNELNTSRK 197


>gi|261418411|ref|YP_003252093.1| histidyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|319767630|ref|YP_004133131.1| histidyl-tRNA synthetase [Geobacillus sp. Y412MC52]
 gi|261374868|gb|ACX77611.1| histidyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|317112496|gb|ADU94988.1| histidyl-tRNA synthetase [Geobacillus sp. Y412MC52]
          Length = 426

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/406 (15%), Positives = 124/406 (30%), Gaps = 12/406 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  + R   +R G  E+  P  +  +L++       D   KEM    D+  +A+   
Sbjct: 20  WQYVEHVARNLCSRYGYREIRTPIFEHTELFLRGVGDTTDIVQKEMYTFEDKGGRALTLR 79

Query: 108 PTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   F  H      + P   Y     FR E        +  +F ++   S D  
Sbjct: 80  PEGTAPVVRAFVEHKLYGSPHQPLKLYYSGPMFRYERPEAGRFRQFVQFGVEALGSSDPA 139

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +    +        L +     + +     +S     +        +   E    C   
Sbjct: 140 IDAEVMALAMHIYEALGLKRIRLVINSLGDLDSRRAHREALVR-HFSSRIHELCPDCQTR 198

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENKRVS 278
               P+   +   D    L +            S  + EK+   L         +++ V 
Sbjct: 199 LHTNPLRILDCKKDRDHELMATAPSILDYLNEDSRAYFEKVKQYLTNLGIPFVIDSRLVR 258

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                    F   ++     +A      G+ + +     G     +  A+          
Sbjct: 259 GLDYYNHTTFEIMSEAEGFGAAATLCGGGRYNGLVQEIGGPETPGIGFALSIERLLAALD 318

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +         + A  +  +D   ++   L + G  V  D +G ++ +Q   AD L
Sbjct: 319 AEGVELPVESGLDCYVVAVGERAKDEAVRLVYALRRSGLRVDQDYLGRKLKAQLKAADRL 378

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G     I+G + +   +  +KH  +G + ++ L E+ ++   R   
Sbjct: 379 GASFVAIIGDEELERQEAAVKHMASGEQTNVPLGELAHFLHERIGK 424


>gi|222100452|ref|YP_002535020.1| Histidyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
 gi|221572842|gb|ACM23654.1| Histidyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
          Length = 385

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 73/389 (18%), Positives = 115/389 (29%), Gaps = 17/389 (4%)

Query: 67  IEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
            E+  P  +  +L+V S     D   KEM    D+  +++   P     +   F  +   
Sbjct: 2   EEIRTPIFEQTELFVRSVGEESDIVQKEMYTFEDKGGRSITLRPEGTAPIVRAFLENSFV 61

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            R     +Y I   FR E        R R+F       F     G+         ++L  
Sbjct: 62  NRGFQQRYYYIGPMFRYEKPQSG---RLRQFHQVGFEIFGSESPGADLETILAVDNFL-- 116

Query: 185 FHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             RLGL    +   S   P       E +           C      +           I
Sbjct: 117 -KRLGLTKYTIHLNSIGCPECRKNYREALREYYGKHLNDLCDDCKRRYETNILRLLDCKI 175

Query: 243 -ISLNSIVEQWTAPYAATSDVHNEKLFDSLPE------NKRVSARGIEVGHIFYFGTKYS 295
              L     + T         H EKL D L E            RG++      F  ++ 
Sbjct: 176 DHELALNAPKSTDYLCEPCREHYEKLKDYLNEFEIKYVEDHTLVRGLDYYTRTVFEVRHE 235

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              +       G+   +     G     +  A                V    +  I + 
Sbjct: 236 GLGAQNAIAGGGRYDGLFSDLGGGTVPALGFAGGIERIVLALKAEGIEVPRKNVHYIYVA 295

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +       K+   L K G +V  D M   +  Q   AD LG    VIVG + +    
Sbjct: 296 TIGEDAFKEGMKLAMELRKKGLNVDVDIMNRNLSGQLKHADRLGAKYVVIVGDEELEKGV 355

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSN 444
           V +++  TG + ++  E  I Y   + S 
Sbjct: 356 VVLRNLETGDQVEIDKEFAIEYIFEKASK 384


>gi|322381604|ref|ZP_08055577.1| hypothetical protein PL1_0791 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154440|gb|EFX46743.1| hypothetical protein PL1_0791 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 456

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/438 (12%), Positives = 136/438 (31%), Gaps = 44/438 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     + +    L +   WV SG   ++   M+   
Sbjct: 28  WDYGPLGVELKNNIKRAWWKKFIQESPYNVGLDAAILMNPQTWVASGHVGNFNDPMIDCK 87

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             +          F     R+F +
Sbjct: 88  QCKARHRADKLIEDALNAKGIELIVDGMTFDQMKDLIEKHHIVCPECGAFDYTDIRQFNL 147

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   Y +          F +  R                 R  +    
Sbjct: 148 MFKTHQGVTASSTNEIYLRPETAQGIFVNFKNVQRTMRKKLPFGIGQIGKSFRNEITPGN 207

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   +  +   ++ +       +  + L    ++  +
Sbjct: 208 FTFRTREFEQMELEFFCKPGEDLEWFSYWREFCRNWLL--SLGMKEANMRLRDHDKEELS 265

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
            Y+  +     K      E   ++ R  +   I +   ++S           G+ +    
Sbjct: 266 HYSNATSDIEYKFPFGWGELWGIADRT-DFDLIRHM--EHSGEDFHFHDQETGEKYVPYC 322

Query: 315 GSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDAC 365
               +GA RV  A + ++++ + +          +  ++AP K ++  +        ++ 
Sbjct: 323 IEPSLGADRVTLAFLINAYEEQELDGGDSRNVLHFHPAIAPVKAAIFPLSKK---LAESA 379

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            K++  LS+    V +DD G  IG ++   D +G P  +      V D +V ++ R T  
Sbjct: 380 GKVFRDLSQ-DFMVEYDDAG-SIGKRYRRQDEIGTPFCITYDFDSVEDGQVTVRDRDTMQ 437

Query: 426 REDMSLEEVINYASHRFS 443
           ++ M + E+  +   +  
Sbjct: 438 QQRMPISELKAFLESKIK 455


>gi|162447800|ref|YP_001620932.1| glycyl-tRNA synthetase, class II [Acholeplasma laidlawii PG-8A]
 gi|161985907|gb|ABX81556.1| glycyl-tRNA synthetase, class II [Acholeplasma laidlawii PG-8A]
          Length = 456

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/450 (13%), Positives = 147/450 (32%), Gaps = 49/450 (10%)

Query: 29  TGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLW 80
           TG I Q S    G+   + + PLG     N+     ++  R     +++    L +  +W
Sbjct: 14  TGYIFQGSEIYGGLANTWDYGPLGSLLKKNIKEAWTQKFIRQAPNVVQLDSSILLNPLVW 73

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             SG    +   ++     N +        E   T           +     Y +  K +
Sbjct: 74  QASGHLSGFSDPLIENKTSNQRYRADKLILEHDPTQNPDGW----SDEKMYQYIMDHKIK 129

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIP 194
           D +      +  R+F M       +  E +   Y        +F+++  I     LK   
Sbjct: 130 DPVSKTSDWLPIRKFNMMFKTFQGVVEETANEVYLRPETAQGIFINFKNIQRAQRLKVPF 189

Query: 195 MRAE---------SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF------ 239
             A+         +       + EF  +      +      + D+ +             
Sbjct: 190 GVAQIGKSFRNEITPGNFTFRTREFEQMELEFFCKPGTEIQWFDYWLDRMLKFLTSLGVK 249

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           ++ +      ++  + Y+  +     K      E   +++R              S    
Sbjct: 250 EESLRAEPHAKEALSHYSNATTDIEFKYPWGFDELWGIASRTNFDLKSHQ---DLSKEDM 306

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAA---------VIESSHDGKGIIWPDSVAPFKIS 350
           +       + +   +    +G  R++            +E+    + +     +AP+K +
Sbjct: 307 SYLDPETNERYIPYVVEPSVGVERLLLVFLLNGLEEETLENGDVRQVLKLHPKLAPYKAA 366

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ +            +I+  LS+   DV +D+  + IG ++   D +G P  + V  + 
Sbjct: 367 ILPLVRK--EHSQKAREIHEMLSE-NLDVVYDET-QNIGKRYRRQDAIGTPFCITVDHQT 422

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           + D  V I+HR +  +  ++++++  +   
Sbjct: 423 MDDDTVTIRHRDSMEQSRIAIKDIEQFIQQ 452


>gi|115470733|ref|NP_001058965.1| Os07g0165000 [Oryza sativa Japonica Group]
 gi|113610501|dbj|BAF20879.1| Os07g0165000 [Oryza sativa Japonica Group]
          Length = 377

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 95/302 (31%), Gaps = 24/302 (7%)

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI-PMRAESGPIGGDLSHEFIVLADTG 217
                +        SY  + +   +  +    +        +        H      +  
Sbjct: 5   SETIVNHMFTKWIQSYRDLPLMINQWANVTRWEMRTKPFIRTLEFLWQEGHTAHATLEEA 64

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E +       +      E      I    S VE +                    E    
Sbjct: 65  EKEAM-QMIDVYTKFAYEQAAIPVIPGRKSRVETFAG-----------ANRTYTIEAMMG 112

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + ++ G     G  +S      F   + +  +V   S+ I + R V  +I +  D  G
Sbjct: 113 DRKALQAGTSHNLGQNFSRAFGTQFMDENSQIEHVWQTSWAI-STRFVGGIIMTHGDDAG 171

Query: 338 IIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-IGSQFA 393
           ++ P ++AP ++ ++ I           +A   +   L + G  V  DD   +  G +F 
Sbjct: 172 LMLPPNIAPIQVVIVPIWKKGDEKSAVMEAVSSVQNTLKEAGIRVKVDDSELRTPGWKFN 231

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIRE-----DMSLEEVINYASHRFSNNRP 447
             ++ G P+++ +G + V++  V I  R   G +       M    ++++   R    + 
Sbjct: 232 FYEMKGVPIRLEIGPRDVTNKSVVISRRDIPGKQGKEFGVSMDPSILVDHIKGRLVEIQA 291

Query: 448 VL 449
            L
Sbjct: 292 SL 293


>gi|284990200|ref|YP_003408754.1| glycyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
 gi|284063445|gb|ADB74383.1| glycyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
          Length = 467

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/435 (14%), Positives = 122/435 (28%), Gaps = 42/435 (9%)

Query: 40  YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  DN+         Q R   + +    +    +WV SG    +   +    
Sbjct: 40  WDYGPLGTELKDNIKRQWWRAVVQGRDDIVGLDSSVILPRPVWVASGHVGVFTDPLTECQ 99

Query: 98  --------DRNDKAMIYG------PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
                   D  ++               ++      +         F           E 
Sbjct: 100 NCHKRFRADHLEEEFEARKGRAPENGLADISCPNCGTKGAWTEPRDFNMMLKTHLGPVED 159

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G+   R    +  +       G+        +  +    R  +        +    
Sbjct: 160 --ESGLHYLRPETAQGIFVNFANVMGAARKKPPFGIGQIGKSFRNEITPGNFIFRTREFE 217

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                EF V   T E       D           D  ++       E+ +     T D+ 
Sbjct: 218 QMEM-EFFVEPGTDEQWHQYWIDERTRWYTDLGIDPANLRHYEHPKEKLSHYSTRTVDIE 276

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA--TFKGA-DGKDHYVQMGSYGIG 320
               F      +     GI     F   T +S    A  T+            +     G
Sbjct: 277 YRFGFQGSEWGELE---GIANRTDFDLKT-HSEHSGADLTYFDQASNTRWTPYVIEPAAG 332

Query: 321 AMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEK 367
             R + A +   +                       +AP K +++ + + +         
Sbjct: 333 LTRSLMAFLIEGYTEDEAPNAKGGVDTRTVLRLDPRLAPVKAAVLPL-SRNADLSPKARD 391

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           + A+L +   +V +DD G  IG ++   D +G P  + V    ++D  V ++ R +  +E
Sbjct: 392 LAAQLRQSW-NVDFDDAGA-IGRRYRRQDEIGTPFCLTVDFDTLTDDAVTVRERDSMSQE 449

Query: 428 DMSLEEVINYASHRF 442
            + L++V  Y   R 
Sbjct: 450 RVGLDQVETYLKTRL 464


>gi|15613814|ref|NP_242117.1| histidyl-tRNA synthetase [Bacillus halodurans C-125]
 gi|20139937|sp|Q9KDG2|SYH_BACHD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|10173867|dbj|BAB04970.1| histidyl-tRNA synthetase [Bacillus halodurans C-125]
          Length = 428

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/408 (14%), Positives = 121/408 (29%), Gaps = 18/408 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +     +   R    E+ VP  +  +L++       D   KEM    DR  +++   
Sbjct: 20  WQWIEQKAYDLCRRYNYQEIRVPMFEHTELFLRGVGDTTDIVQKEMYTFEDRGGRSLTLR 79

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +T     + +    N P   + I   FR E      + +  +F ++   S    
Sbjct: 80  PEGTASVTRAYVSNKLYGQANQPTKLFYIGPMFRYERPQSGRMRQFVQFGVEALGSA--D 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT---GETQVFC 223
           P         +   Y  +  +     I    ++         E +V        E    C
Sbjct: 138 PAIDAEVLALVMRFYEELGLKNLKLVINSLGDTDS--RLAHREALVNHFKPRIHEFCNDC 195

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENK 275
                  P+   +   D    L           +  S  + EK+   L         +  
Sbjct: 196 QDRLEKNPLRILDCKKDRDHELMGTAPSIHDYLSTESKAYFEKVQSYLTALNIPFVVDAT 255

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V          F          + T     G+ + +     G     +  A+       
Sbjct: 256 LVRGLDYYNHTAFEVMVDGEGFGAITTLCGGGRYNGLVEEIGGPETPGIGFALSIERAIM 315

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                    A  +     +    +  +D   ++  +L   G     D +  ++  Q   A
Sbjct: 316 ALEAQQAKPAHNQAIDCYVVTLGEAAKDKGVELVYQLRNAGISAEKDYLDRKMKGQLKAA 375

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D L     VI+G   ++  KV +K+  TG + D++L +++++   +  
Sbjct: 376 DRLHAKWTVILGEDELAVGKVNVKNMETGEQTDVALTDLVSHMKQQVE 423


>gi|225680119|gb|EEH18403.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 496

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/374 (15%), Positives = 111/374 (29%), Gaps = 75/374 (20%)

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D    +      + ++ +   PT E VM   +   I+S+R+LP    Q     R E +  
Sbjct: 68  DVLKNDDFPGNSKLERKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWNSVVRWEFKNP 127

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              +R+REFL ++ ++  LT   ++    ++   Y  ++                     
Sbjct: 128 QPFLRTREFLWQEGHTAHLTEAAAREEVLQILEHYAHVY--------------------- 166

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNE 265
                                       E      I    +  E++    Y  T + +  
Sbjct: 167 ---------------------------EELLAVPVIRGQKTEKEKFAGGLYTTTVEGYIP 199

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA---- 321
                       + RGI+ G     G  +S     T +    K    +   +        
Sbjct: 200 A-----------TGRGIQGGTSHGLGQNFSKMFGITVEDPSAKPDEKKPALHVWQNSWGL 248

Query: 322 -MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-----AHDQVCRDACE--KIYARLS 373
             R +  ++    D +G++ P  VA  +  +I +         +      E   + A + 
Sbjct: 249 STRTIGIMVMVHGDDRGLVLPPRVADVQTVIIPVGITAKTTDKERASLYAEIDALAAVIE 308

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGI-REDMS 430
             G  V  D      G +F   +L G PL++  G    +   V    R       +  + 
Sbjct: 309 DAGVRVEVDKRDNSPGWKFNDWELRGIPLRLEFGPGESTGHFVTTSRRDIPGKDGKSTIP 368

Query: 431 LEEVINYASHRFSN 444
           + E+          
Sbjct: 369 ISELKTQVPALLET 382


>gi|300771444|ref|ZP_07081319.1| glycine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761433|gb|EFK58254.1| glycine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 489

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/476 (12%), Positives = 134/476 (28%), Gaps = 63/476 (13%)

Query: 20  IASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQN--RTGAIEMSV 71
           + SH      G + Q S        +Y +  LG +  +N+     +         + +  
Sbjct: 12  VVSHAKE--YGFVFQSSEIYDGLSAVYDYGQLGSELKNNLKTYWWKSMVQLNENIVGIDA 69

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS------- 124
                   W  SG  D +   M+   D   +        E+ +                 
Sbjct: 70  AIFMHPTTWKASGHVDGFNDPMIDNKDSKKR-YRADQLIEDKIARYEADGKTDKAAALLA 128

Query: 125 ----YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
                 N         +     +       ++   + +    F            ++++ 
Sbjct: 129 DLNKALNADDLAGLKTIIEEHNIVCPVSGTKNWTEVRQFNLMFATQMGAMADGAEQVYLR 188

Query: 181 YLR---------------IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS- 224
                                     +   +A    +        +   +  E Q FC  
Sbjct: 189 PETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEVIARQFIMRMREFEQMEMQFFCRP 248

Query: 225 --KDFMDFPIPSENTDFDDIISLNSIVEQW-----TAPYAATSDVHNEKLFDSLPENKRV 277
             +             +   +  N    ++      A YA  +            E + +
Sbjct: 249 GTEMEWYNKWKETRLKWHLALGFNPDNYRYHDHDKLAHYANAAVDIEFNFPFGFKEVEGI 308

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------ 331
            +R            ++S      F     +++   +    IG  R+   V+ +      
Sbjct: 309 HSRTDFDLKQHQ---EFSKKKMQYFDTEINQNYIPYVIETSIGLDRLFLTVLCNSLVQED 365

Query: 332 ------SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
                       + +P ++AP K +++ +   D    +   +I A L  +  +V +D+  
Sbjct: 366 LSTDEKQDSRVVLKFPPALAPVKAAILPLTKKD-GLPEKAREIMATLK-LDYNVQYDEKD 423

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             IG ++   D +G P  + V  + + D+ V I+ R T  +E +++ ++    S  
Sbjct: 424 A-IGKRYRRQDAIGTPFCITVDHQSLEDNTVTIRDRDTMKQERVAIADLERIVSDL 478


>gi|164687517|ref|ZP_02211545.1| hypothetical protein CLOBAR_01158 [Clostridium bartlettii DSM
           16795]
 gi|164603291|gb|EDQ96756.1| hypothetical protein CLOBAR_01158 [Clostridium bartlettii DSM
           16795]
          Length = 420

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/410 (12%), Positives = 107/410 (26%), Gaps = 26/410 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE     G  E+  P  +  +++  S     D   KEM    DR D+ +   
Sbjct: 20  WHYVEKKFREICALYGYEEIRTPIFEHTEVFARSVGDTTDVVQKEMYSFTDRGDRQLSLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  +       P   Y I   FR E        R R+F            
Sbjct: 80  PEGTAGVIRSFIENKMYADTQPTKLYYITPCFRYERPQAG---RQRQFHQFGIEVLGSDG 136

Query: 168 EGSKHSYNKMFVSYLRI--------------FHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
                    + V +                       +      E      D+  E  + 
Sbjct: 137 PSVDAEVISLAVQFFNEMGLKNLSVNINSVGCPTCREEYNRKLKEYLDKKVDVLCETCLE 196

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS-LP 272
                                ++  F          + +        ++    + D  + 
Sbjct: 197 RKDKNPMRVIDCKNPHCKENLQDIPFMIDHLCEDCKDHFDKLQTYLKEMDINYVVDKTIV 256

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  +          G++ ++     +     +      G  GIG       ++ + 
Sbjct: 257 RGLDYYKKTAFEIISNDIGSQSTVCGGGRY-DGLVEMLGGPKGISGIGFALGAERLLLTL 315

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            +    I         I+ I         +    K+   L         D + + + +QF
Sbjct: 316 ENNNIEIENPKSTDIYIATI-----GDAAKTKSFKLIKDLRTNHISADNDHLDKSLKAQF 370

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             +D L     V++G   +++    +K+  T  +  + L E+++    R 
Sbjct: 371 KYSDKLNAKYTVVIGDDELANDTATLKNMKTSEQTTIKLSELVDELKKRL 420


>gi|254228665|ref|ZP_04922089.1| histidyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262395117|ref|YP_003286971.1| histidyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|151938844|gb|EDN57678.1| histidyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262338711|gb|ACY52506.1| histidyl-tRNA synthetase [Vibrio sp. Ex25]
          Length = 422

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/415 (14%), Positives = 121/415 (29%), Gaps = 22/415 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKEMLRLA 97
           LP        +   ++   +  G  E+ +P ++  +L+      E+   D   KEM    
Sbjct: 15  LPTQSPLWQKLENTVKNVISAYGYNEVRMPIVEETNLFSRAVGEET---DVVSKEMYTFD 71

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSR 153
           DRN  ++   P            +    R+    +Y +   FR E       R       
Sbjct: 72  DRNGDSLTLRPEGTAGCVRSCIQNSLINRDEQRLWY-MGPMFRHERPQKGRYRQFHQCGV 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           E    +    D           +            + +G +       +  +     H  
Sbjct: 131 EVFGLNGPDVDAELIMMTARLWRELGINEHVRLELNSIGSQEDRADYRTALVAFLEQHID 190

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFD 269
           ++  D            +D   P       D   L   + E+  A +A   ++ +    +
Sbjct: 191 VLDEDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSEYLGEESKAHFAGLCELLDAAGIE 250

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                + V         +F +    +  + A      G  +   +   G      V   +
Sbjct: 251 YTVNERLVRGLDYYNRTVFEW---ITESLGAQGTVCGGGRYDGLVEQLGGKPTPAVGFAM 307

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQ 387
                   +   +     +   + +    +    A  K+  +L +   G  V     G  
Sbjct: 308 GLERLVLMLETLELTDVRRSVDVYVVTAGEGTMMAGMKLAEQLRESIPGVRVMNHFGGGN 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              QF  AD +G  + +++G   V+D+ V +K    G +E  +  EV    +   
Sbjct: 368 FKKQFKRADKVGAVIALVLGENEVADNTVVLKDLAGGEQETYNQAEVAEKIAALI 422


>gi|269965171|ref|ZP_06179305.1| histidyl-tRNA synthetase [Vibrio alginolyticus 40B]
 gi|269830157|gb|EEZ84384.1| histidyl-tRNA synthetase [Vibrio alginolyticus 40B]
          Length = 422

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/415 (14%), Positives = 121/415 (29%), Gaps = 22/415 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKEMLRLA 97
           LP        +   ++   +  G  E+ +P ++  +L+      E+   D   KEM    
Sbjct: 15  LPTQSPLWQKLENTVKNVISAYGYNEVRMPIVEETNLFSRAVGEET---DVVSKEMYTFD 71

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSR 153
           DRN  ++   P            +    R+    +Y +   FR E       R       
Sbjct: 72  DRNGDSLTLRPEGTAGCVRSCIQNSLINRDEQRLWY-MGPMFRHERPQKGRYRQFHQCGV 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           E    +    D           +            + +G +       +  +     H  
Sbjct: 131 EVFGLNGPDVDAELIMMTARLWRELGINEHVRLELNSIGSQEDRADYRTALVAFLEQHID 190

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFD 269
           ++  D            +D   P       D   L+  + E+  A +A   ++ +     
Sbjct: 191 VLDEDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSDYLGEESKAHFAGLCELLDAAGIK 250

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                + V         +F +    +  + A      G  +   +   G      V   +
Sbjct: 251 YTVNERLVRGLDYYNRTVFEW---ITESLGAQGTVCGGGRYDGLVEQLGGKPTPAVGFAM 307

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQ 387
                   +   +     +   + +    +    A  K+  +L +   G  V     G  
Sbjct: 308 GLERLVLMLETLELTDVRRSVDVYVVTAGEGTMMAGMKLAEQLRESVPGVRVMNHFGGGN 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              QF  AD +G  L +++G   V+D+ V +K    G +E  +  EV    +   
Sbjct: 368 FKKQFKRADKVGAVLALVLGENEVADNTVVLKDLAGGEQETYNQAEVAEKIAALI 422


>gi|149190089|ref|ZP_01868366.1| histidyl-tRNA synthetase [Vibrio shilonii AK1]
 gi|148836119|gb|EDL53079.1| histidyl-tRNA synthetase [Vibrio shilonii AK1]
          Length = 422

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/412 (14%), Positives = 118/412 (28%), Gaps = 16/412 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V   ++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKVENTVKHVVSAYGYNEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFL 156
             ++   P            +   Y      +Y +   FR E       R       E  
Sbjct: 75  GDSLTLRPEGTAGCVRSGIENGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQCGVEVF 133

Query: 157 MKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             +    D           +            + +G         +  I     H  ++ 
Sbjct: 134 GLNGPDVDAELIMMTARLWRELGIAEHVRLELNSIGSLEARADYRTALIAHLEQHIDVLD 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSLP 272
            D+           +D   P       D   L+  ++  +   +A   ++ +    +   
Sbjct: 194 EDSKRRMYTNPLRVLDSKNPDVQAILVDAPELSDYLDADSKQHFAGLCELLDAAGIEYTV 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             + V         +F +    +  + A      G  +   +   G  A   V   +   
Sbjct: 254 NQRLVRGLDYYNRTVFEW---ITESLGAQGTVCGGGRYDGLVEQLGGKATPAVGFAMGLE 310

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGS 390
                +   +     +     +    +    A  K+   L +   G  V     G     
Sbjct: 311 RLVLMMETLELTDVRRSVDAYVVTAGEGTMMAGMKLAESLREAIPGIRVMNHFGGGNFKK 370

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           QF  AD +G    +++G   V+++ V +K    G +E ++  E+    +   
Sbjct: 371 QFKRADKVGAVYALVLGENEVAENTVVVKDLQGGEQETIAQTELAAKLADII 422


>gi|309808038|ref|ZP_07701957.1| putative threonine--tRNA ligase [Lactobacillus iners LactinV
           01V1-a]
 gi|308168721|gb|EFO70820.1| putative threonine--tRNA ligase [Lactobacillus iners LactinV
           01V1-a]
          Length = 377

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 4/131 (3%)

Query: 16  RDAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           RD       L L    +  +   G+  W+P G      +   I +++   G   +  P L
Sbjct: 238 RDHRTIGRDLDLF--FVDPKVGAGLPYWMPKGATIRRVIERYIIDKEVADGYQHVYTPVL 295

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            + D +  SG +  Y ++M    D  D  M    P +      I+  HI+SYR LP    
Sbjct: 296 MNLDAYKTSGHWAHYREDMFPPMDMGDGEMLELRPMNCPSHIQIYNHHIRSYRELPIRIA 355

Query: 134 QIQLKFRDELR 144
           ++ +  R + +
Sbjct: 356 ELGMMHRSKNQ 366


>gi|119489706|ref|ZP_01622465.1| histidyl-tRNA synthetase [Lyngbya sp. PCC 8106]
 gi|119454443|gb|EAW35592.1| histidyl-tRNA synthetase [Lyngbya sp. PCC 8106]
          Length = 432

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/413 (15%), Positives = 116/413 (28%), Gaps = 25/413 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V +I R    +   +E+  P  +   L+        D  GKEM   +DR D+++   
Sbjct: 21  WQWVESIARTILGKANYLEIRTPIFEQTSLFERGIGEATDVVGKEMYTFSDRGDRSITLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +    K +       +     FR E        R R+F            
Sbjct: 81  PEGTAGVVRSYI-ENKLHVGGVQRLWYTGPMFRYERPQAG---RQRQFHQLGVEVLGSNN 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-----TGETQVF 222
             +      +  + L     LGLK++ +   S     D       L D       E    
Sbjct: 137 PRADVEVIAIATNIL---QALGLKNLHLDLNSVGDLEDRGRYRQALIDYLTPYKDELDAD 193

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--- 279
                   P+   ++       +              S  H +K+   L   +       
Sbjct: 194 SQDRLSRNPLRILDSKDKRTQEITQNAPSILDYLGEQSRTHFDKVQQLLTGLEISYTLNP 253

Query: 280 ---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F    S  + A      G  +   +   G G                
Sbjct: 254 RLVRGLDYYTHTAF-EIISDDLGAQATVCGGGRYDGLVQELG-GPDTPAVGWAMGLERLI 311

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            ++      P       I +  +        +  +L +    V  D  G   G QF  AD
Sbjct: 312 LLLQQLQNLPQSELDFYIVSRGESAEPQATILAQKLRQAEFSVEVDLSGSAFGKQFKRAD 371

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI---NYASHRFSNNR 446
             G    +++G     +  V +K   TG ++ +   +++        +   +R
Sbjct: 372 RSGAVACLVLGDAEAENQTVNLKWLKTGEQDKIPQSDLLTKTEEIRSKIQASR 424


>gi|294101540|ref|YP_003553398.1| histidyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
 gi|293616520|gb|ADE56674.1| histidyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
          Length = 420

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/404 (16%), Positives = 115/404 (28%), Gaps = 15/404 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I  E     G  E+ +P  +  +L+        D   KEM    DR  +++   
Sbjct: 21  WSYVLKIAAEVAKNFGYSEVHLPVFEHTELFSRGIGETTDVVEKEMYTFEDRGGRSLTLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD-LT 166
           P     M   +  +  +    P   +     FR E   +    R R+F   D  S     
Sbjct: 81  PEATASMVRCYLENKLNSHAQPVKLWCAGPMFRYERPQKG---RYRQFWQLDFESLGTKN 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVFCS 224
           P             Y R+  +     I         P   +   E+       E    C 
Sbjct: 138 PMVDVEVIALSLELYRRLGLQNLEVVINSVGCPECRPAYKEKLKEYFKPR-YEELCKTCQ 196

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA----- 279
             F   P+   +    +   +                 H +K+ + L             
Sbjct: 197 SRFERNPLRILDCKNPECKEITDGAPDIYTSLCDDCRCHFDKVQEGLSRIGAHYHIDKRL 256

Query: 280 -RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RG++      +        +       G+   +     G     V  A           
Sbjct: 257 VRGLDYYTKTAYEVLSGALGAQNAVCGGGRYDNLAETIGGPFTPSVGFATGLERIVLVME 316

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
               S  P     +     D+  R+  +K+ A L +       D M   + +QF  AD  
Sbjct: 317 EQNCSFGPSPDLDVYAIGLDEASREELQKLVAELRQANISTDMDYMERGMKAQFKSADAS 376

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G     I+G   +++  V +K+  TG + ++    V+NY     
Sbjct: 377 GAVFACILGGNELANGVVNVKNLKTGEQVEVERTAVLNYIKSNL 420


>gi|289193081|ref|YP_003459022.1| histidyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
 gi|288939531|gb|ADC70286.1| histidyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
          Length = 413

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 133/417 (31%), Gaps = 29/417 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL-WVESGRYDSYGKEMLRL 96
           G   +LP   K    +   +RE   R G  E+  PT ++ +L   ++G  +   K++   
Sbjct: 7   GTRDFLPEEMKKRRFIENKLREVFERYGYKEILTPTFETFELIAKKTG--EEIRKQLYVF 64

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   + M   P     +   + + +K+    P   Y     FR E        R REF 
Sbjct: 65  KDHGGREMALRPEMTSPVVRFYLNELKN-LQKPLRLYYFANCFRYERPQAG---RFREFW 120

Query: 157 MKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRL-------GLKSIPMRAESGPIGGDLSH 208
                      P       N      + I           G+    +   +     ++  
Sbjct: 121 QMGCELIGCKEPLADAEVLNLAMDGLINIGLDFDVHIGHLGVLKGVLEEFNVSEEEEVKI 180

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-----PYAATSDVH 263
             ++  +  E       + +         D         I+++        P +  +  +
Sbjct: 181 RRLIDKEDYENLEVYLNEILGEEKKELIFDILKFKGGREILDELKEILKDFPKSIEAIKN 240

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            EK+ + +  +K     GI  G  +Y G  +                         G   
Sbjct: 241 LEKILEFVIHDKYTINLGIARGLDYYTGMVF-EIYGKKGAKQICGGGRYDNLIETFGGEP 299

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
             A       D   +   D     +  LI     D+        I  +L K G  V    
Sbjct: 300 TPAVGFAYGFDRIMMNIDDLDIEEEGILIIPVKKDKELIKKSLIIADKLRKAGKIVEL-- 357

Query: 384 MGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             E +G +   A    +  GF   +IVG K +++ KV +K  +TG ++ +S++E++N
Sbjct: 358 --EIMGRKLRKALDYANSRGFKKVIIVGEKELNEGKVTLKDMITGEQKLISIDELVN 412


>gi|41408235|ref|NP_961071.1| glycyl-tRNA synthetase [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|59798571|sp|Q73Y21|SYG_MYCPA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|41396590|gb|AAS04454.1| GlyS [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 463

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/432 (13%), Positives = 135/432 (31%), Gaps = 34/432 (7%)

Query: 40  YSWLPLGQKALDNVNA-IIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           + + PLG +  +N+     R     R   + +    +    +WV SG  + +   ++   
Sbjct: 36  WDYGPLGVEFKENIKRQWWRSVVTGREDVVGLDSSIILPRQVWVASGHVEVFHDPLVESL 95

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN----------LPFTFYQIQLKFRDELRP 145
           +  +  +A      +E        + +   R+           P  F  +   +   +  
Sbjct: 96  ITHKRYRADHLIEAYEAKHGHPPPNGLADIRDPDTGEPGRWTEPREFNMMLKTYLGPIET 155

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+   R    +  +        +        +  +    R  +        +      
Sbjct: 156 EEGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQIGKSFRNEITPGNFIFRTREFEQM 215

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               F+  +   E   +     + + +     D  ++       ++ +     T D+  +
Sbjct: 216 EMEFFVEPSTAKEWHQYWIDTRLQWYVE-LGIDPQNLRLFEHPADKLSHYSDRTVDIEYK 274

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             F   P  +     G+     F   T  K+S    + +  A    +   +     G  R
Sbjct: 275 FGFAGNPWGELE---GVANRTDFDLSTHSKHSGVDLSFYDQATDSRYIPYVIEPAAGLTR 331

Query: 324 VVAAVIESSH------DGKGIIWPDSVAPFKISLINIKA------HDQVCRDACEKIYAR 371
              A +  ++      + KG +   +V      L  +KA                 + A 
Sbjct: 332 SFMAFLIDAYVEDEAPNAKGKMEKRAVLRLDPRLAPVKAAVLPLSRHADLSPKARDLAAE 391

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R    +E + +
Sbjct: 392 LRRFW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDSLEDNAVTVRRRDDMSQERIGM 449

Query: 432 EEVINYASHRFS 443
           + V +Y S R  
Sbjct: 450 DAVADYLSARLK 461


>gi|255994489|ref|ZP_05427624.1| glycine--tRNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993202|gb|EEU03291.1| glycine--tRNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 466

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/437 (13%), Positives = 132/437 (30%), Gaps = 42/437 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++        + +    L +   WV SG    +   ++   
Sbjct: 36  WDYGPLGVELKNNIKKAWWKKFVHESKYNVGLDAAILMNPQTWVASGHVGGFSDPLVDCK 95

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +   +        +E+  +     +  + N     +  + + +     +      R+F +
Sbjct: 96  ECKSRFRADKLIEDELQKEGKEQVVDGWTNEKMMSFLEEHEVKCPNCGKHNFTDIRQFNL 155

Query: 158 KDAYSFDLTPEGSKHSYNK-----------------MFVSYLRIFHRLGLKSIPMRAESG 200
                  +T       Y +                 M         ++G           
Sbjct: 156 MFKTYQGVTEGAKAEIYLRPETAQGIFVNFKSVQRSMRKKLPFGICQIGKSFRNEITPGN 215

Query: 201 PIGGDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            I      E     F    D         +++    + +     ++I       E+ +  
Sbjct: 216 FIFRTREFEQMELEFFCAPDESMGWFDFWQNYCVEFLKTIGIKEENIRKREHSKEELSHY 275

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP-MSATFKG-ADGKDHYVQ 313
             AT+D+          E   ++ R       F              ++     +     
Sbjct: 276 SEATTDI-EYNFSFGWGELWGIANR-----TDFDLKQHTKESGEELVYQDPETNRKFTPY 329

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEK----- 367
                +GA R++ AV+  +++ + +    + +   + L   +  +        ++     
Sbjct: 330 CIEPSLGADRLLLAVLNDAYEEEIVDKDKNTSRVVMRLHPYLAPYKAAVLPLSKQLSSVS 389

Query: 368 --IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
             I+ +L K    V +D  G  IG ++   D +G P  + V      D KV I+ R T  
Sbjct: 390 DPIFEKLIK-DFPVDYDKTG-SIGKRYRRQDEIGTPYCICVDFDTEKDGKVTIRDRDTME 447

Query: 426 REDMSLEEVINYASHRF 442
           +  + ++EV  Y   R 
Sbjct: 448 QTRIGIDEVSGYIGDRI 464


>gi|220929366|ref|YP_002506275.1| histidyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|219999694|gb|ACL76295.1| histidyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 442

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 133/436 (30%), Gaps = 43/436 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G    LP  Q   +N+  II++   + G I +  P ++ ++ L  +SG      ++ + 
Sbjct: 12  PGFMELLPADQIVFNNMLDIIKKTYEKYGFIPIDTPMIEKSEVLLAKSG---GETEKQVY 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             ++ D  +         +      H       PF  Y I   FR E   +    R REF
Sbjct: 69  RFNKGDNDLSLRFDLTVPLARYVSQHFGD-LTFPFKRYHIGKVFRGEKPQKG---RFREF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              D          S  +  ++       F  LG     +R  +  +      +  V   
Sbjct: 125 YQCDIDII-GNENLSLINDAEILSVIYSTFKALGFDDFTIRINNRKVLNGFFEDLQVPDK 183

Query: 216 T------------GETQVFCSKDFMDFPIPSENTDFDDIIS-------------LNSIVE 250
           T            G  +V      +     +     D + +             +    E
Sbjct: 184 TEVLRTIDKLEKIGSKEVLIELKSIGLSEENAQRVLDFVGTKGSCRDIIMHLKEMKVQNE 243

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT-------KYSLPMSATFK 303
            +         V +      +P +  +    I  G  +Y GT       +Y    S    
Sbjct: 244 MFNEGINEMELVVDYIDSFKVPSSNYMIDLTIARGLDYYTGTIYETVLNQYPSIGSVCSG 303

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           G               G    +          +  I  +        ++ I  +  +   
Sbjct: 304 GRYDNLAQKYTTKKLPGVGISIGFSRLFYQLREAGILGEMKRATPSKILVIPMNGTMGN- 362

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +I  ++   G          +IG +F+ AD LG P  ++VG   V+    ++K   T
Sbjct: 363 -ALEIATKIRDEGVSAEIYFNEGKIGKKFSYADKLGIPYVIVVGEDEVNSGIYKLKDMAT 421

Query: 424 GIREDMSLEEVINYAS 439
           G + D+++E++I    
Sbjct: 422 GEQTDLTVEQIIEKLK 437


>gi|283456448|ref|YP_003361012.1| glycyl-tRNA synthetase [Bifidobacterium dentium Bd1]
 gi|283103082|gb|ADB10188.1| GlyS Glycyl-tRNA synthetase [Bifidobacterium dentium Bd1]
          Length = 438

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/408 (15%), Positives = 124/408 (30%), Gaps = 40/408 (9%)

Query: 69  MSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           +    +    +WV SG    +     E L    R+    +     E+    +  + +K  
Sbjct: 11  VDTSIILPPAVWVASGHVSVFNDPLIECLNCHKRHRADKLEESYAEKHGDKLPENGLKDI 70

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                           E R    ++R+    ++D  S       +       F + +   
Sbjct: 71  VCPDCGTRGNWT----EPRDFNMMLRTHLGPVEDENSLHYLRPETAQGIFVDFKNVMTSS 126

Query: 186 H--------RLGLKSIPMRAESGPIGG-----DLSHEFIVLADTGETQVFCSKDFMDFPI 232
                     +G            I        +  EF V   T E       D      
Sbjct: 127 RSKPPFGIANMGKSFRNEITPGNFIFRTREFEQMEMEFFVAPGTDEEWHQYWIDARTQWY 186

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                  +++       E+       T D+  +  F      +     G+     F    
Sbjct: 187 IDLGVKPENLRHYEHPKEKLAHYSKRTVDIEYKFGFQGSDWGELE---GVANRTDFDLSA 243

Query: 293 --KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII----------- 339
             K+S    + F  A G+ +   +     G  R + A +  ++D                
Sbjct: 244 HAKHSGEDLSYFNQATGEKYVPYVIEPAAGLTRSLMAFLVDAYDVDEAPNTKGGVDKRTV 303

Query: 340 --WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                 +AP K +++ +    ++     + +   L +    + +D+ G  IG ++   D 
Sbjct: 304 LRLDPRLAPVKAAVLPLSKKPELQS-VAQNLADDLRQHDWMIDYDEAGA-IGRRYRREDE 361

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +G PL V V    + D  V I+ R T  +E ++L++V +Y + R    
Sbjct: 362 IGTPLCVTVDFDTLDDQAVTIRERDTMQQERVALDKVADYVAARIGEK 409


>gi|311745437|ref|ZP_07719222.1| glycine--tRNA ligase [Algoriphagus sp. PR1]
 gi|126577987|gb|EAZ82207.1| glycine--tRNA ligase [Algoriphagus sp. PR1]
          Length = 488

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/445 (13%), Positives = 131/445 (29%), Gaps = 49/445 (11%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +Y +   G +  +N+  +  E   R     + +          W  SG  DS+   M+  
Sbjct: 39  VYDYGAYGVELKNNLKRLWWETMTRVQDNIVGIDAAIFMHPTTWKASGHVDSFNDPMIDN 98

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL----------PFTFYQIQLKFRDELRPR 146
            D   +        E          I+    L                  L   ++++  
Sbjct: 99  KDSKKRYRADVLVEEHAAVFERAGDIERANELTGALARLLEAEDLAGVRDLIINEDIKCP 158

Query: 147 FGVMRSR---------------EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
                +                      +  F           N + V            
Sbjct: 159 ISGTSNWTDVRQFNLMFSTQVGSVAEDASTIFLRPETAQGIFVNFLNVQKTARMKVPFGI 218

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVF--------CSKDFMDFPIPSENTDFDDII 243
           +   +A    I        +   +  E Q F          + + +  +           
Sbjct: 219 AQIGKAFRNEIVARQFIFRMREFEQMEMQFFVRPGTELEWYQKWAETRMKWHLALGTTAE 278

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            L     +  A YA  +            E + + +R            ++S      F 
Sbjct: 279 KLRKHDHEKLAHYANAAMDIEYDFPFGFKEVEGIHSRTDFDLKSHQ---EFSKKKQQYFD 335

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHD--------GKGIIWPDSVAPFKISLINIK 355
               K++   +    IGA R+    + +++            + +  ++AP K +++ I 
Sbjct: 336 PEVNKNYIPYVIETSIGADRLFLMTLCNAYTEEKTEEKSRTYLKFHPAIAPVKAAILPIT 395

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             D    D  ++I   L K   ++ +++    IG ++A  DL+G P  + V  + + D+ 
Sbjct: 396 KKD-GLPDKAKEIVD-LLKYDFNIIYEE-AASIGKRYARQDLIGTPFCIAVDHQTLEDNT 452

Query: 416 VEIKHRLTGIREDMSLEEVINYASH 440
           V I+HR T  +E + + E+    + 
Sbjct: 453 VTIRHRDTTEQERVPISELHGRIAE 477


>gi|91225138|ref|ZP_01260360.1| histidyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|91190081|gb|EAS76352.1| histidyl-tRNA synthetase [Vibrio alginolyticus 12G01]
          Length = 422

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/415 (14%), Positives = 121/415 (29%), Gaps = 22/415 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKEMLRLA 97
           LP        +   ++   +  G  E+ +P ++  +L+      E+   D   KEM    
Sbjct: 15  LPTQSPLWQKLENTVKNVISAYGYNEVRMPIVEETNLFSRAVGEET---DVVSKEMYTFD 71

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSR 153
           DRN  ++   P            +    R+    +Y +   FR E       R       
Sbjct: 72  DRNGDSLTLRPEGTAGCVRSCIQNSLINRDEQRLWY-MGPMFRHERPQKGRYRQFHQCGV 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           E    +    D           +            + +G +       +  +     H  
Sbjct: 131 EVFGLNGPDVDAELIMMTARLWRELGINEHVRLELNSIGSQEDRADYRTALVAFLEQHID 190

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFD 269
           ++  D            +D   P       D   L+  + E+  A +A   ++ +     
Sbjct: 191 VLDEDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSDYLGEESKAHFAGLCELLDAAGIK 250

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                + V         +F +    +  + A      G  +   +   G      V   +
Sbjct: 251 YTVNERLVRGLDYYNRTVFEW---ITESLGAQGTVCGGGRYDGLVEQLGGKPTPAVGFAM 307

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQ 387
                   +   +     +   + +    +    A  K+  +L +   G  V     G  
Sbjct: 308 GLERLVLMLETLELTDVRRSVDVYVVTAGEGTMMAGMKLAEQLRESVPGVRVMNHFGGGN 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              QF  AD +G  + +++G   V+D+ V +K    G +E  +  EV    +   
Sbjct: 368 FKKQFKRADKVGAVVALVLGENEVADNTVVLKDLAGGEQETYNQAEVAEKIAALI 422


>gi|168704219|ref|ZP_02736496.1| glycyl-tRNA synthetase [Gemmata obscuriglobus UQM 2246]
          Length = 554

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 67/429 (15%), Positives = 127/429 (29%), Gaps = 50/429 (11%)

Query: 44  PLGQKALDNVNAIIREE----------QNRTGAIEMSVPTLQ------SADLWVESGRYD 87
           P  + A+  + + I++               G+ E+ +  +          L        
Sbjct: 144 PAMKAAVKKLESYIKKHKIEANKVFKPLLSLGSPEVILAHVIGPDVDVPGTLTEPRAFNL 203

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
            +      +A   +K  +   T + +  +       S   LPF   Q+   FR+E+ PR 
Sbjct: 204 MFESHAGPIASDENKVYLRPETAQGIFANYKNVLDSSRLKLPFGIAQVGKAFRNEINPRN 263

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              RSREF   +   F    E  K  Y        + +  LG++          +  +  
Sbjct: 264 FTFRSREFEQMEIEFFCHPDESMK-WYQYWRDLRKKWYSTLGIQ------SGNLVPREQG 316

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E +     G T +     F D P   E         L++  +          +      
Sbjct: 317 KEELAHYSIGTTDIEYLFPFSDEPQELEGVAHRGNFDLSAHAKHSGKDLGYFDE------ 370

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E      +            +         +          +     GA R   A
Sbjct: 371 -----EGWNALLQTRLEPFKDDKAKREEEKKKLEKEEKARFQFVPHVIEPSAGADRFTLA 425

Query: 328 VIESSH-------------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           V+  ++                 + +   +AP K ++  +   D    +A +++Y  L  
Sbjct: 426 VLCEAYSEDSVPDAKGGTETRIVMRFHPRLAPIKAAIFPLVNKD-GMDEAAKELYRELKP 484

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +V +D  G  IG ++   D  G P  + V    + D  V ++ R T  +E +   EV
Sbjct: 485 Y-FNVVYDQSGA-IGRRYRRQDEAGTPFCITVDGDTMKDGTVTLRDRDTLKQERIPKGEV 542

Query: 435 INYASHRFS 443
                    
Sbjct: 543 RARIEAALR 551



 Score = 45.5 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 16/85 (18%)

Query: 30  GMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT-----GAIEMSV-----PT 73
           G I Q S       G + + PLG +   N+     ++  R         E+ +       
Sbjct: 19  GFIFQSSEIYGGINGFWDYGPLGVELKRNIKEAWWQDMVRNPPPGPDGQEIRMVGLDCAI 78

Query: 74  LQSADLWVESGRYDSYGKEMLRLAD 98
           + +  +WV SG    +   M+   +
Sbjct: 79  IMNPKVWVASGHVGGFSDPMMDCKE 103


>gi|227830722|ref|YP_002832502.1| threonyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|229579616|ref|YP_002838015.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|229581718|ref|YP_002840117.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|284998235|ref|YP_003420003.1| Anticodon-binding domain protein [Sulfolobus islandicus L.D.8.5]
 gi|227457170|gb|ACP35857.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|228010331|gb|ACP46093.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|228012434|gb|ACP48195.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|284446131|gb|ADB87633.1| Anticodon-binding domain protein [Sulfolobus islandicus L.D.8.5]
          Length = 386

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 3/139 (2%)

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
            +V      +   R+V   I  S   +    PD + P ++ L+ +K       D   ++ 
Sbjct: 239 WWVNESRTYVDVGRLVYYFILESIRKQPPTLPDWLNPIQVRLLPVKKD---FLDFSIQVA 295

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            RL K G  V  DD+ + +G++   A     P  +I+G + V  S + +K R    ++ M
Sbjct: 296 ERLRKEGIRVNIDDLDDSLGNKIRRAGTEWIPFVIIIGEREVKTSTLTVKIRANNEQKSM 355

Query: 430 SLEEVINYASHRFSNNRPV 448
           S+EE++          + +
Sbjct: 356 SVEELVKEIKDEVKERQNL 374


>gi|118465900|ref|YP_881257.1| glycyl-tRNA synthetase [Mycobacterium avium 104]
 gi|118167187|gb|ABK68084.1| glycyl-tRNA synthetase [Mycobacterium avium 104]
          Length = 459

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/433 (13%), Positives = 132/433 (30%), Gaps = 36/433 (8%)

Query: 40  YSWLPLGQKALDNVNA-IIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           + + PLG +  +N+     R         + +    +    +WV SG  + +   ++   
Sbjct: 32  WDYGPLGVEFKENIKRQWWRSVVTAREDVVGLDSSIILPRQVWVASGHVEVFHDPLVESL 91

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN----------LPFTFYQIQLKFRDELRP 145
           +  +  +A      +E        + +   R+           P  F  +   +   +  
Sbjct: 92  ITHKRYRADHLIEAYEAKHGHPPPNGLADIRDPDTGEPGRWTEPREFNMMLKTYLGPIET 151

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+   R    +  +        +        +  +    R  +        +      
Sbjct: 152 EEGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQIGKSFRNEITPGNFIFRTREFEQM 211

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               F+  +   E   +     + + +     D  ++       ++ +     T D+  +
Sbjct: 212 EMEFFVEPSTAKEWHQYWIDTRLQWYVE-LGIDPQNLRLFEHPADKLSHYSDRTVDIEYK 270

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             F   P  +     G+     F   T  K+S    + +  A    +   +     G  R
Sbjct: 271 FGFAGNPWGELE---GVANRTDFDLSTHSKHSGVDLSFYDQATDSRYIPYVIEPAAGLTR 327

Query: 324 VVAAVIES-------------SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              A +                     +     +AP K +++ +  H          + A
Sbjct: 328 SFMAFLIDAYVEDEAPNAKGKMEKRTVLRLDPRLAPVKAAVLPLSRH-ADLSPKARDLAA 386

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R    +E + 
Sbjct: 387 ELRRFW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDSLEDNAVTVRRRDDMSQERIG 444

Query: 431 LEEVINYASHRFS 443
           ++ V +Y S R  
Sbjct: 445 MDAVADYLSARLK 457


>gi|313897385|ref|ZP_07830928.1| glycine--tRNA ligase [Clostridium sp. HGF2]
 gi|312957755|gb|EFR39380.1| glycine--tRNA ligase [Clostridium sp. HGF2]
          Length = 460

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 61/436 (13%), Positives = 139/436 (31%), Gaps = 42/436 (9%)

Query: 40  YSWLPLGQKALDNVNA-IIREEQNRTGAI-EMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     R+    +     +    L +  +WV SG    +   ++   
Sbjct: 34  WDFGPLGVELKENIKKAWWRKFIQESPYNTGIQSAILMNPAVWVASGHVGGFSDPLMDCK 93

Query: 98  D-----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMR 151
           +     R D+ +      E  +       +  Y                 ++R    + +
Sbjct: 94  ECKSRFRADQLIEDATNGEVSVEGWSNEAMMDYIEEHQLKCPKCGAHNFTDIRQFNLMFK 153

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRA 197
           + + +++DA S       +       F +  R                 R  +       
Sbjct: 154 TFQGVVEDAKSAIYLRPETAQGMFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGNFIF 213

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            +          F       E   +     M F       + D +   +   E+      
Sbjct: 214 RTREFEQMELEFFCQPGTDMEWYQYYKDYCMSFLTN-LGINSDHLRFRDHTAEELAFYSK 272

Query: 258 ATSDV-HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMG 315
            T D+ +N        E   ++ R           +K S      +      + +     
Sbjct: 273 GTCDIEYNFHSQIGWGELWGIADRTDYDLKQHQEASKKS----LEYLDPATNEKYLAYCV 328

Query: 316 SYGIGAMRVVAAVIESSHD--------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
              +G  R++ A +  ++D           +     +AP K  ++ +        D   +
Sbjct: 329 EPAVGVERLMLAFMCDAYDEEELENDTRIVMHLHPFLAPIKACVMPLSKK---LSDKAME 385

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           ++  ++ VG +  +D+ G  IG ++   D +G P  + V  +  +D+ V ++HR +  +E
Sbjct: 386 VFQLIAPVG-NCDYDEAG-SIGKRYRRQDAVGTPFCITVDFETENDNCVTVRHRDSMEQE 443

Query: 428 DMSLEEVINYASHRFS 443
            +SL+++  Y   R  
Sbjct: 444 RVSLKDLSAYIEERIK 459


>gi|308189914|ref|YP_003922845.1| glycine--tRNA ligase [Mycoplasma fermentans JER]
 gi|307624656|gb|ADN68961.1| glycine--tRNA ligase [Mycoplasma fermentans JER]
          Length = 446

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/420 (14%), Positives = 136/420 (32%), Gaps = 42/420 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ---NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           + + PLG    DN+ A  + E     +   + +    L +  +WV SG   ++   ++  
Sbjct: 35  WDYGPLGSLLKDNIEAAWKSEFIKKEKNNHL-LDSKILMNPQVWVTSGHVINFNDPLIEN 93

Query: 97  A--------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
                    D+  + +      E++  D  +  ++                R        
Sbjct: 94  KVNGKRYRADKLVQEIDPNIIPEKMTNDEIKKFLEKNLKEYDGAKTNWSDIRKFNLMFET 153

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH----RLGLKSIPMRAESGPIGG 204
                E      Y    T +G   ++  +  S          ++G            I  
Sbjct: 154 KQGVTEETKNKIYLRPETAQGIFVNFKNVQRSMRSKLPMGIGQVGKSFRNEVTPGNFIFR 213

Query: 205 DLSHE------FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
               E      F    +  +   +  K    F         +++       E+ +   + 
Sbjct: 214 TREFEQMELEVFCHPKEANKLYKYYIKKAEKFA-EYLGLSKENVRIREHEKEELSHYSSG 272

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSY 317
           TSD+     F    E   ++ R     +        +   +  +      +     +   
Sbjct: 273 TSDIEYLFPF-GWGELLGIANRTDYDLNAH----MKATGENLEYVDPVTNEKFVPFVIEP 327

Query: 318 GIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            IG  R++ A++  S+D +          +    ++AP++++++ +        D   ++
Sbjct: 328 SIGLDRLMLAILIDSYDEEKLEKDDSRVVLHLHKNLAPYQVAVLPLVKK---LNDKATEV 384

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y +L K G  V +D+ G  IG ++   D +G P  V +    +  + V I+ R +  +++
Sbjct: 385 YEKLLKAGLSVTYDETG-SIGKRYRRQDAIGTPYCVTIDFDSLEKNTVTIRDRDSMKQKN 443


>gi|219852785|ref|YP_002467217.1| histidyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
 gi|254782336|sp|B8GDZ3|SYH_METPE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|219547044|gb|ACL17494.1| histidyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
          Length = 409

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 63/419 (15%), Positives = 125/419 (29%), Gaps = 35/419 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   +LP   +A   +   +RE   R G  E++ P  +   L+   SG+      EM   
Sbjct: 7   GTRDFLPDEMEARRMIEGRMREAVRRWGYREVATPIFEDLSLFTMRSGQ--GIIDEMYVF 64

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +  ++ +  +     P  +      FR E   +    R R+F 
Sbjct: 65  QDKGGRDLALRPELTAAVLRMYVNEAR-VLAKPLRWCYFADCFRYERPQKG---RYRQFW 120

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                        +      +  + +R              +     G L     +LAD 
Sbjct: 121 QFGVELIGADTAAADAEVILVADNAIRSSG----------LDYDLKIGHLGLMKHLLADV 170

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           GE        ++D        D+ +   L ++ +  T   AA +      +   LPE  R
Sbjct: 171 GEEVRRKVMAYLDKKEFDGLKDYLETAGLAALTDPLTRLLAAETLDEAFAVTGPLPEEGR 230

Query: 277 V---------------SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
           +                  GI  G  +Y G  +          +          +   G 
Sbjct: 231 IREMAALLDATGVRYSYNFGIARGLDYYTGMVFEGFAKNLGAESQIVGGGAYRLAQVFGG 290

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
               +       D   +   +     +  +  +       R    ++       G     
Sbjct: 291 DDAPSVGFAIGFDRVMVALGEVQTRKQKIVGVVST--AEGRPFAFRVANAFRTAGIRADL 348

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D     +G+Q A A        V++G + V+   V +K+  TG +  ++++  +     
Sbjct: 349 DLSDRGLGAQLARAAKE-ADFAVLIGEREVATGTVTLKNLATGTQTAVTIDLAVRTVID 406


>gi|229585254|ref|YP_002843756.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus M.16.27]
 gi|238620213|ref|YP_002915039.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus M.16.4]
 gi|228020304|gb|ACP55711.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus M.16.27]
 gi|238381283|gb|ACR42371.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus M.16.4]
          Length = 386

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 3/139 (2%)

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
            +V      +   R+V   I  S   +    PD + P ++ L+ +K       D   ++ 
Sbjct: 239 WWVNESRTYVDVGRLVYYFILESIRKQPPTLPDWLNPIQVRLLPVKKD---FLDFSIQVA 295

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            RL K G  V  DD+ + +G++   A     P  +I+G + V  S + +K R    ++ M
Sbjct: 296 ERLRKEGIRVNIDDLDDSLGNKIRRAGTEWIPFVIIIGEREVKTSTLTVKIRANNEQKSM 355

Query: 430 SLEEVINYASHRFSNNRPV 448
           S+EE++          + +
Sbjct: 356 SVEELVKEIKDEVKERQNL 374


>gi|193211698|ref|YP_001997651.1| glycyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
 gi|193085175|gb|ACF10451.1| glycyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 489

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 60/466 (12%), Positives = 120/466 (25%), Gaps = 57/466 (12%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G I   S         + + PLG +   N+  +      R     +       + +  
Sbjct: 29  RRGFIFPSSEIYGGLSSCFDYGPLGSEMKKNIKDLWWNAMTRR-HQNIVGLDASIMMNPT 87

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM-------------TDIFRSHIKSY 125
           +W  SG   S+   ++       +        E  +                        
Sbjct: 88  VWEASGHVASFNDPLIDDKT-TKRRYRADHLIENHIEKLHREGKEAEAAAVKVAYEAAEG 146

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL--------------TPEGSK 171
              P       +       P  G     E    +                          
Sbjct: 147 TEDPNRTLYNIIIESGIKAPDTGSADWTEVRQFNLMFQCNMGAIAGSGGVVYLRPETAQG 206

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--DFMD 229
              N   V            +   +A    I        +V  +  E Q F         
Sbjct: 207 IFVNFHNVREASRMKVPFGIAQIGKAFRNEIVKGNFIFRMVEFEQMEMQYFVKPGTQLEA 266

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI-- 287
           F    E        +L    E+    Y      H   L   +          IE  H   
Sbjct: 267 FEAWREERFRWYSETLGMTKEKL-HWYKHDKLAHYADLAYDIKFEFPFGTEEIEGIHSRT 325

Query: 288 -FYF-GTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK-------- 336
            F     +     S  +      + +   +     G  R   A++  ++           
Sbjct: 326 DFDLTQHQEYSGKSMEYIDQTTNERYIPYVVETSSGCDRTFLALLSDAYQEDVVDGEPRV 385

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            +     VAP K +++ +    ++  +   ++ A LS+    V +DD    IG ++   D
Sbjct: 386 MLKLAPKVAPVKAAVLPLMKKGEMA-EKARQLCAALSES-FMVQYDD-AASIGKRYRRQD 442

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +G P    V    + +  + +++R T  +E + + +   + + + 
Sbjct: 443 EIGTPFCFTVDHDTLENGTITVRYRDTAAQERIEMSKAAEFLASKL 488


>gi|28897383|ref|NP_796988.1| histidyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838540|ref|ZP_01991207.1| histidyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|260363552|ref|ZP_05776381.1| histidine--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|260876342|ref|ZP_05888697.1| histidine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|260898613|ref|ZP_05907109.1| histidine--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|260899287|ref|ZP_05907682.1| histidine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|31077001|sp|Q87S15|SYH_VIBPA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|28805595|dbj|BAC58872.1| histidyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748055|gb|EDM58914.1| histidyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|308086928|gb|EFO36623.1| histidine--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|308093021|gb|EFO42716.1| histidine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|308106609|gb|EFO44149.1| histidine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|308113026|gb|EFO50566.1| histidine--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|328472595|gb|EGF43458.1| histidyl-tRNA synthetase [Vibrio parahaemolyticus 10329]
          Length = 422

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/415 (14%), Positives = 122/415 (29%), Gaps = 22/415 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKEMLRLA 97
           LP        +   ++   +  G  E+ +P ++  +L+      E+   D   KEM    
Sbjct: 15  LPTQSPLWQKLENTVKNVISAYGYNEVRMPIVEETNLFSRAVGEET---DVVSKEMYTFD 71

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSR 153
           DRN  ++   P            +    R+    +Y +   FR E       R       
Sbjct: 72  DRNGDSLTLRPEGTAGCVRSCIQNSLINRDEQRLWY-MGPMFRHERPQKGRYRQFHQCGV 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           E    +    D           +            + +G +       +  +     H  
Sbjct: 131 EVFGLNGPDVDAELIMMTARLWRELGIDKHVRLELNSIGSQEDRADYRTALVAFLEQHID 190

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFD 269
           ++  D            +D   P       D   L   + E+  A +A   ++ +    +
Sbjct: 191 VLDEDCKRRMHTNPLRVLDTKNPDIQAILGDAPRLSEYLGEESKAHFAGLCELLDAAGIE 250

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                + V         +F +    +  + A      G  +   +   G      V   +
Sbjct: 251 YTVNERLVRGLDYYNRTVFEW---ITESLGAQGTVCGGGRYDGLVEQLGGKPTPAVGFAM 307

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQ 387
                   +   +     +   + +    +    A  K+  +L +   G  V     G  
Sbjct: 308 GLERLVLMLETLELTDVRRSVDVYVVTAGEGTMMAGMKLAEQLREAISGVRVMNHFGGGN 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              QF  AD +G  + +++G   V+D+ V +K  + G +E  +  EV    +   
Sbjct: 368 FKKQFKRADKVGAVVALVLGENEVADNTVVLKDLVGGEQETYNQAEVAEKIAALI 422


>gi|227827985|ref|YP_002829765.1| threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus M.14.25]
 gi|227459781|gb|ACP38467.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus M.14.25]
          Length = 386

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 3/139 (2%)

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
            +V      +   R+V   I  S   +    PD + P ++ L+ +K       D   ++ 
Sbjct: 239 WWVNESRTYVDVGRLVYYFILESIRKQPPTLPDWLNPIQVRLLPVKKD---FLDFSIQVA 295

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            RL K G  V  DD+ + +G++   A     P  +I+G + V  S + +K R    ++ M
Sbjct: 296 ERLRKEGIRVNIDDLDDSLGNKIRRAGTEWIPFVIIIGEREVKTSTLTVKIRANNEQKSM 355

Query: 430 SLEEVINYASHRFSNNRPV 448
           S+EE++          + +
Sbjct: 356 SVEELVKEIKDEVKERQNL 374


>gi|224476728|ref|YP_002634334.1| histidyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254782345|sp|B9DNF9|SYH_STACT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|222421335|emb|CAL28149.1| histidyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 428

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/413 (13%), Positives = 120/413 (29%), Gaps = 11/413 (2%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    + A + E        E+  P  +S DL+        D   KEM    D+ 
Sbjct: 12  LPDQSRKWRYIEAKLDELMELYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKG 71

Query: 101 DKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           D+++   P     +      + ++   N P   Y     FR E + +    +  +F ++ 
Sbjct: 72  DRSITLRPEGTAAVVRSYIENKMQGDPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEA 131

Query: 160 AYSFDLT------PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             + D +              +        + + +G            I           
Sbjct: 132 IGAQDPSIDAEILAMVMHIYQSFGLKHLKLVINSVGDFDSRKEYNKALIEHFEPVIDTFC 191

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D            +D  +  +         +   + + +  Y      + + L     E
Sbjct: 192 NDCQARLYTNPMRILDCKVDRDKEAVKTAPRITDYLNEESKEYFNQVKQYLDDLNIPYVE 251

Query: 274 N-KRVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           +   V          F           A T     G+ + +     G     +  A+   
Sbjct: 252 DPNLVRGLDYYTHTAFELMIDSPDYDGAITTLCGGGRYNGLLELLDGPKQTGIGFALSIE 311

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                       +   +   + I    +        +   L   G     D +  +I  Q
Sbjct: 312 RLLLALEEEGIEIEEDEHLDLFIVTMGEKADRYAVNLLNDLRHHGIKADKDYLKRKIKGQ 371

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              A+ +G    +++G + + D  ++IKH  +G  + + L ++++Y  ++   
Sbjct: 372 MKQANRVGAEYTIVIGEQELEDGNIDIKHMDSGETDSIHLADLVSYFENKKEK 424


>gi|194246926|emb|CAQ76827.1| prolyl-tRNA synthetase [Campylobacter concisus]
          Length = 105

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 48/71 (67%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          M+ SK++ P  +E P+DA + SH+ ++R G + Q   G+Y++LPLG+   D ++ +++EE
Sbjct: 1  MKFSKFYAPTTKEAPKDASLPSHQFLIRGGFVEQIGSGLYNYLPLGKIMHDKISRVVKEE 60

Query: 61 QNRTGAIEMSV 71
           +  GA+E+S 
Sbjct: 61 MDEAGALEVSF 71


>gi|261403731|ref|YP_003247955.1| glycyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
 gi|261370724|gb|ACX73473.1| glycyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
          Length = 575

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 90/280 (32%), Gaps = 13/280 (4%)

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS-KD 226
                 Y            R G       A+      D            E  +F    +
Sbjct: 304 PNEMAHYAIDCWDAEIYTERFGWIECVGIAD----RTDYDLRSHSSHSGVELSIFVELDE 359

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
             +      N ++  +  +     +    Y        ++ F    E        I+ G 
Sbjct: 360 EREIETFEINLNYKVVGKIFKKDTKAIEEYINNLSEKEKEEFVKSIEKDGKVIINID-GK 418

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH----DGKGIIWPD 342
            F    K  + +    K   G+     +     G  R+   ++E ++    D   +    
Sbjct: 419 DFEI-LKDYVEIKKVKKVIKGEKVIPHVIEPSYGIDRITYCLLEHAYREEEDRVYLDLKP 477

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           SVAP K  ++ +   D       ++I   L + G    +DD G  IG ++  AD +G P 
Sbjct: 478 SVAPIKAYVLPLVNKDD-MPKIAKEIEQMLRENGIIAEYDDSGA-IGRRYMRADEIGVPF 535

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + V  + + D  + I+ R T  +  + +EE++ Y   + 
Sbjct: 536 CITVDGQTLKDGTITIRERNTREQVRIHIEELVEYLKSKV 575



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 1/107 (0%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G   + PLG    +N+ +  RE+   + G  E+  PT+   ++   SG  D++   ++ 
Sbjct: 30  AGFVDYGPLGCLLKNNIISKFREQYIIKEGFYEIESPTVTPYEVLKASGHVDNFTDPIVE 89

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
             +  +         E V  D     +K    L         K   E
Sbjct: 90  CKNCLESFRADHLIEEFVDVDTEGKTLKDLEELIRKHNIRCPKCGGE 136


>gi|229820268|ref|YP_002881794.1| glycyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
 gi|229566181|gb|ACQ80032.1| glycyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
          Length = 462

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 64/451 (14%), Positives = 130/451 (28%), Gaps = 44/451 (9%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G + Q      G    + + PLG +  +N+          +R   + +    +    +
Sbjct: 17  RRGFVFQAGEIYGGSRSAWDYGPLGVELKENIKRQWWRAMVTSRDDIVGLDSSVILPRPV 76

Query: 80  WVESGRYDSYGK---EMLRLADRNDKAMIYGPTHE-----------EVMTDIFRSHIKSY 125
           WV SG   ++     E L    R  +  +     E           E+      +  +  
Sbjct: 77  WVASGHVGAFSDPLTECLSCHKRFREDHLIEEFEERKGRAPEGGLAEIACPNCGTRGQWT 136

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
               F           E     G+   R    +  +       G+        ++ +   
Sbjct: 137 EPRDFNMMLKTYLGPVED--ESGLHYLRPETAQGIFVNFANVMGAARKKPPFGIAQIGKS 194

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
            R  +        +          F+      +   +      D+ +     D D++   
Sbjct: 195 FRNEITPGNFIFRTREFEQMEMEYFVEPGSDEQWHQYWIDARTDWYV-DLGIDRDNLRLY 253

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFK 303
               E+ +     T D+     F      +     GI     F   T   +S    + F 
Sbjct: 254 EHPAEKLSHYSTRTVDIEYRFGFTGSEWGELE---GIANRTDFDLKTHSEHSGRDLSYFD 310

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI------SLINIK-- 355
               +     +     G  R + A +  ++              +        L  +K  
Sbjct: 311 QGKNERWVPYVIEPAAGLTRSLMAFLVEAYAEDEAPNTKGGVDVRTVLRLDHRLAPVKVA 370

Query: 356 ----AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
               +           + A L +   +V +DD G  IG ++   D +G P  V V    +
Sbjct: 371 VLPLSRSGDLSPKARGLAAELRQAW-NVDFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTL 428

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +D  V ++HR +  +E ++L +V  Y +   
Sbjct: 429 TDDAVTVRHRDSMQQERVALSKVRGYLAEHL 459


>gi|309775526|ref|ZP_07670526.1| glycine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916620|gb|EFP62360.1| glycine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 460

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 61/436 (13%), Positives = 140/436 (32%), Gaps = 42/436 (9%)

Query: 40  YSWLPLGQKALDNVNA-IIREEQNRTGAI-EMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     R+    +     +    L +  +WV SG    +   ++   
Sbjct: 34  WDFGPLGVELKENVKKAWWRKFIQESPYNTGIQSAILMNPAVWVASGHVGGFSDPLMDCK 93

Query: 98  D-----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMR 151
           +     R D+ +      E  +       + SY                 ++R    + +
Sbjct: 94  ECKSRFRADQLIEDATNGEVSVEGWSNEAMMSYIEEHQLKCPKCGAHNFTDIRQFNLMFK 153

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRA 197
           + + +++DA S       +       F +  R                 R  +       
Sbjct: 154 TFQGVVEDAKSAIYLRPETAQGMFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGNFIF 213

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            +          F       E   +     M F       + + +   +   E+      
Sbjct: 214 RTREFEQMELEFFCQPGTDMEWYQYYKDFCMSFLTN-LGINSEHLRFRDHTPEELAFYSK 272

Query: 258 ATSDV-HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMG 315
            T D+ +N        E   ++ R           +K S      +      + +     
Sbjct: 273 GTCDIEYNFHSQIGWGELWGIADRTDYDLKQHQEASKKS----LEYLDPATNEKYLAYCV 328

Query: 316 SYGIGAMRVVAAVIESSHD--------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
              +G  R++ A +  ++D           +     +AP K  ++ +            +
Sbjct: 329 EPAVGVERLMLAFMCDAYDEEELENDTRIVMHLHPFLAPIKACVMPLSKK---LSSKAME 385

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +++ ++ +G +  +D+ G  IG ++   D +G P  + V  +  +D+ V ++HR +  +E
Sbjct: 386 VFSMIAPIG-NCDYDEAG-SIGKRYRRQDAVGTPFCITVDFETENDNCVTVRHRDSMEQE 443

Query: 428 DMSLEEVINYASHRFS 443
            +SL+E+  Y   R  
Sbjct: 444 RVSLDELSAYIEERIK 459


>gi|291520560|emb|CBK75781.1| glycyl-tRNA synthetase, dimeric type [Butyrivibrio fibrisolvens
           16/4]
          Length = 397

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/401 (14%), Positives = 124/401 (30%), Gaps = 49/401 (12%)

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS---YRNLPFTFYQIQ 136
           WV SG   S+   ++   + +++        E+   +       S   +       +   
Sbjct: 6   WVASGHLGSFSDPLMDCKECHER-FRADKIIEDFAAENNIELKGSVDGWTKEEMKEFIDS 64

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH- 186
                    +      REF +       +T +     Y +          F +  R    
Sbjct: 65  HNVPCPTCGKHNFTDIREFNLMFKTFQGVTEDAKNTVYLRPETAQGIFVNFKNVQRTSRK 124

Query: 187 -------------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                        R  +        +          F       E   +      D+ + 
Sbjct: 125 KVPFGIGQIGKSFRNEITPGNFTFRTREFEQMELEFFCKPGSQDEWFQYWRGFCRDWLL- 183

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                 +D + L     +  + Y+  +            E   +++R             
Sbjct: 184 -SLGMKEDEMRLRDHDPEELSFYSTGTTDIEFLFPFGWGELWGIASRTDYDLTQHQ---N 239

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI------------IWP 341
            S      F     + +   +    +GA RVV A + +++D + +             + 
Sbjct: 240 VSGQDLTYFDDETNEKYLPYVIEPSLGADRVVLAFLCAAYDEEEVGKDGKSDVRTVLHFH 299

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            ++AP KI ++ +        +  EK++A LSK   +  +DD G  IG ++   D +G P
Sbjct: 300 PALAPVKIGVLPLSKK---LNEGAEKVFAELSKK-YNCEFDDRG-TIGKRYRRMDEIGTP 354

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             +        D  V I+HR +  +E +++ ++  Y + +F
Sbjct: 355 FCITYDFDSEEDHMVTIRHRDSMEQERIAIADLDAYFADKF 395


>gi|254774762|ref|ZP_05216278.1| glycyl-tRNA synthetase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 463

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/433 (13%), Positives = 133/433 (30%), Gaps = 36/433 (8%)

Query: 40  YSWLPLGQKALDNVNA-IIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           + + PLG +  +N+     R     R   + +    +    +WV SG  + +   ++   
Sbjct: 36  WDYGPLGVEFKENIKRQWWRSVVTGREDVVGLDSSIILPRQVWVASGHVEVFHDPLVESL 95

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN----------LPFTFYQIQLKFRDELRP 145
           +  +  +A      +E        + +   R+           P  F  +   +   +  
Sbjct: 96  ITHKRYRADHLIEAYEAKHGHPPPNGLADIRDPDTGEPGRWTEPREFNMMLKTYLGPIET 155

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+   R    +  +        +        +  +    R  +        +      
Sbjct: 156 EEGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQIGKSFRNEITPGNFIFRTREFEQM 215

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               F+  +   E   +     + + +     D  ++       ++ +     T D+  +
Sbjct: 216 EMEFFVEPSTAKEWHQYWIDTRLQWYVE-LGIDPQNLRLFEHPADKLSHYSDRTVDIEYK 274

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             F   P  +     G+     F   T  K+S    + +  A    +   +     G  R
Sbjct: 275 FGFAGNPWGELE---GVANRTDFDLSTHSKHSGVDLSFYDQATDSRYIPYVIEPAAGLTR 331

Query: 324 VVAAVIES-------------SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              A +                     +     +AP K +++ +  H          + A
Sbjct: 332 SFMAFLIDAYVEDEAPNAKGKMEKRTVLRLDPRLAPVKAAVLPLSRH-ADLSPKARDLAA 390

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R    +E + 
Sbjct: 391 ELRRFW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDSLEDNAVTVRRRDDMSQERIG 448

Query: 431 LEEVINYASHRFS 443
           ++ V +Y S R  
Sbjct: 449 MDAVADYLSARLK 461


>gi|301168127|emb|CBW27713.1| Glycyl-tRNA synthetase [Bacteriovorax marinus SJ]
          Length = 440

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 126/434 (29%), Gaps = 32/434 (7%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLW 80
           R G I Q S    G+   + + P G +  +NV     +    R   + +         +W
Sbjct: 18  RRGFIFQSSEIYGGLGSCWDYAPYGIQLKNNVKESWWKAMTFREDVVGIDASIFMHPMVW 77

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             SG  D +   M+      ++         +       +     R+    F        
Sbjct: 78  KASGHVDGFSDPMVDCKSCKERYREDQIDTSKPCAKCGATDFTEPRDFNLMFNTQMGAVT 137

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
           D     +    + + +  +  +   T                R     G   I    E  
Sbjct: 138 DSSSTVYLRPETAQGIFVNFLNVQQTMRKKLPFGIAQIGKAFRNEITPG-NFIFRTREFE 196

Query: 201 PIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            +      +     D  E  +    +  +D  + +E   ++             A YA  
Sbjct: 197 QMEMQFFVKPGTQLDAMEKWKEVRWQWHIDNGLRAEKLRWE------PHGPDSLAHYADA 250

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
           +     +      E + + +R           +K     +  +       K +   +   
Sbjct: 251 ATDIEYEFPMGWGEMEGIHSRTDFDLKRHEEFSK----KNLKYLDTEDGNKKYLPYVLET 306

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---------HDQVCRDACEKI 368
            +G  R V A++  ++  +     ++          I             +       K+
Sbjct: 307 SVGCDRAVLALLCDAYRLENEGDKENERVVMKFHPKIAPIKVAVLPLVKKEKLDTPARKL 366

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +  + K      +D  G  IG ++   D +G PL V      + D+ V ++ R T  +E 
Sbjct: 367 FETIQK-NYQAEYDVAG-SIGKRYRRQDEIGTPLCVTFDFDTLDDNAVTVRDRDTMTQER 424

Query: 429 MSLEEVINYASHRF 442
           ++++++  Y   + 
Sbjct: 425 VAIDQLDKYLRDKL 438


>gi|170725902|ref|YP_001759928.1| histidyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
 gi|229558741|sp|B1KKJ3|SYH_SHEWM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|169811249|gb|ACA85833.1| histidyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
          Length = 424

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 65/418 (15%), Positives = 125/418 (29%), Gaps = 16/418 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        +  ++RE     G  E+  P ++S DL+  S G   D   KEM  
Sbjct: 10  GMNDILPTQSPLWQKLETVLRETVAAYGYSEIRTPIVESTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y +   FR E   +    +  +F
Sbjct: 70  FDDRNGDSLTLRPEGTASTVRAGNEHGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFNQF 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            ++         +      +                 + LG  +      S  I      
Sbjct: 129 GVEVYGIGTADVDAEVLMLSARLWEKLGIKEHVTLELNTLGDPAERATYRSALIEFLEQF 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKL 267
           +  +  ++           +D   P       D   L   + E+  A ++   ++ +   
Sbjct: 189 KEQLDEESQRRMYTNPLRVLDTKNPEVQALLVDAPELMDFLGEESRAHFSHLCELLDAVG 248

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              +   + V         +F      SL    T       D  V+            A 
Sbjct: 249 IQYVINPRLVRGLDYYNRTVFE-WVTSSLGSQGTVLAGGRYDGLVEQLGGKDTPAVGFAM 307

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMG 385
            +E        +   S  P  + +      D    +   KI   L        V     G
Sbjct: 308 GLERIVLLLETLELTSDIPSTVDVYVTAMGDTSKIE-AIKIAQTLRSELPNLRVMSHCGG 366

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHRF 442
                Q   AD  G  + +++G   +++++V +K+ R    +E ++ + +  Y + + 
Sbjct: 367 GNFKKQMKRADKSGAQIALVIGEDELANNQVAVKYLREKKEQELVARDGLATYIAKQI 424


>gi|239608018|gb|EEQ85005.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis ER-3]
          Length = 555

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 67/186 (36%), Positives = 105/186 (56%), Gaps = 1/186 (0%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
            LPLG +  + +  ++ +     GA ++S+ ++ S  LW +SGR      E  +  DR +
Sbjct: 1   MLPLGLRVQEKLERLVDKHMRTLGASKLSLSSISSQALWEKSGRLKK-DSEFFKFQDRKE 59

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
              +  PTHEE +T +    + SYR+LP   YQI  K+RDE RPR G++R REF+MKD Y
Sbjct: 60  ARFLLAPTHEEEITSLVAGAVNSYRDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLY 119

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +FD +PE +  +Y+ +  +Y+R+F  L +  +   A+SG +GG LSHEF +    GE  +
Sbjct: 120 TFDYSPETAIKTYSAVKKAYIRLFDELRIPYMIATADSGNMGGSLSHEFHLPNPKGEDTI 179

Query: 222 FCSKDF 227
                 
Sbjct: 180 ISCSSC 185



 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 97/193 (50%), Gaps = 21/193 (10%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-------------KGADGKDHYVQM 314
                E+   +   IE+ H F+ GT+YS  ++A+                       ++M
Sbjct: 365 CSKCGEHTVQTHTAIELAHTFHLGTRYSKVLNASVAVPLTLLKDGSKTDDTSTLSVPLEM 424

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL-- 372
           G +GIG  R+++AV ++  D KG+ WP ++APF++ +I     D+      E++Y  +  
Sbjct: 425 GCHGIGVSRMISAVADTLADSKGLNWPRAIAPFEVIIIP----DKGLEGEAERVYDDING 480

Query: 373 SKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDMS 430
            ++G  DV  DD    I  +   ADL+G+P+ +++G  + +++K+E++ R    +RE +S
Sbjct: 481 RQIGAVDVIVDDRDRNIPWKLRDADLIGYPVIIVIGKSWKTENKLEVQCRRLNNLRETVS 540

Query: 431 LEEVINYASHRFS 443
           L+++  +      
Sbjct: 541 LQDLHPFTKSLLD 553


>gi|183983647|ref|YP_001851938.1| glycyl-tRNA synthetase GlyS [Mycobacterium marinum M]
 gi|183176973|gb|ACC42083.1| glycyl-tRNA synthetase GlyS [Mycobacterium marinum M]
          Length = 463

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/433 (13%), Positives = 131/433 (30%), Gaps = 36/433 (8%)

Query: 40  YSWLPLGQKALDNVNA-IIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM---- 93
           + + PLG +  +N+     R     R   + +    +   ++WV SG  + +   +    
Sbjct: 36  WDYGPLGVELKENIKRQWWRSVVTGRDDVVGLDSSIILPREVWVASGHVEVFHDPLVESL 95

Query: 94  ----LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT----FYQIQLKFRDELRP 145
                  AD   +A                   ++     +T    F  +   +   +  
Sbjct: 96  ITHKRYRADHLIEAYEAKHGQPPPNGLADIRDPETGEPGQWTEPREFNMMLKTYLGPIET 155

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+   R    +  +        +        +  +    R  +        +      
Sbjct: 156 EEGLHYLRPETAQGIFVNFANVLTTSRKKPPFGIGQIGKSFRNEITPGNFIFRTREFEQM 215

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               F+  +   E   +     + + +     D +++       E+ +     T D+  +
Sbjct: 216 EMEFFVEPSTAKEWHQYWIDTRLQWYV-DLGIDAENLRLFEHPKEKLSHYSDRTVDIEYK 274

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             F   P  +     G+     F   T  K+S    + +   +   +   +     G  R
Sbjct: 275 FGFVGNPWGELE---GVANRTDFDLSTHSKHSGTELSFYDQVEDVRYTPYVIEPAAGLTR 331

Query: 324 VVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              A +  ++                       +AP K +++ +  H          + A
Sbjct: 332 SFMAFLIDAYTEDEAPNAKGGVDKRTVLRLDPRLAPVKAAVLPLSRH-ADLSPKARDLAA 390

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K   ++ +DD G  IG ++   D +G P  V V    + D  V ++ R    +E + 
Sbjct: 391 ELRKYW-NIDFDDAGA-IGRRYRRQDEIGTPFCVTVDFDSLEDDAVTVRERDAMTQERIG 448

Query: 431 LEEVINYASHRFS 443
           + +V +Y + R  
Sbjct: 449 IAKVADYLAPRLK 461


>gi|110598295|ref|ZP_01386570.1| glycyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
 gi|110340103|gb|EAT58603.1| glycyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
          Length = 489

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 66/474 (13%), Positives = 130/474 (27%), Gaps = 55/474 (11%)

Query: 18  AEIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM-- 69
            ++ S  L  R G I+  S         + + PLG +   N+  +      R     +  
Sbjct: 21  HKLVS--LAKRRGFIYPSSEIYEGLSSCFDYGPLGSELKKNIKELWWNTMTRR-HQNIVG 77

Query: 70  -SVPTLQSADLWVESGRYDSYGKEM---LRLADRNDKAMIYGPTHE-------------- 111
                L +  +W  SG   S+   M        R     +     E              
Sbjct: 78  IDASILMNPRVWEASGHVASFNDPMIDDRTTKRRYRADHLIENHIEKLRRDGKDEELQKV 137

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG--------VMRSREFLMKDAYSF 163
           +   +   S   S R L       ++K  D     +            +   +   +   
Sbjct: 138 QSAYENVASAEDSNRALYELIIAEKIKAPDTGSGDWTEVRQFNLMFQCNMGAVADKSSIV 197

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            L PE ++  +            R     +   +A    I        +V  +  E Q F
Sbjct: 198 YLRPETAQGIFVNFHNVRESSRMRVPFGIAQIGKAFRNEIVKGNFIFRMVEFEQMEMQYF 257

Query: 223 CSKDFMDFPIPS--ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                      +  E        +L    E+    Y      H   L   +         
Sbjct: 258 VKPGTQKGAFEAWREERFAWYSTALGLRAEKL-HWYKHDKLAHYADLAYDIKYEFPFGIE 316

Query: 281 GIEVGHI---FYF-GTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            IE  H    F     +     +  +      +     +     G  R+  A++  ++  
Sbjct: 317 EIEGIHSRTDFDLKQHQEYSGKNMEYIDQLTNERFIPYVVETSAGCDRLFLALLADAYRE 376

Query: 336 KGIIWPDSVAPFKISLINIKA-------HDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
             +   + V       +                 +   ++   LS+    V +DD G  I
Sbjct: 377 DVVDGEERVMLKLAPKVAPVKAAVLPLMKKGGMGEKAAQLRDELSES-FLVQYDDAG-SI 434

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G ++   D +G P  + V  + + +  V ++ R +  +E + L  V  +   + 
Sbjct: 435 GKRYRRQDEIGTPFCITVDHQSLEEGTVTVRFRDSAAQERIDLSRVREFICEKL 488


>gi|288932487|ref|YP_003436547.1| histidyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
 gi|288894735|gb|ADC66272.1| histidyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
          Length = 409

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 76/410 (18%), Positives = 131/410 (31%), Gaps = 20/410 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   +LP   +    +  I RE     G  E+  PT +  +L+  +SG  +   KE+   
Sbjct: 8   GTRDFLPEEMEKRRELEKIFREVVELFGYREVQTPTFEHLELFTIKSG--EEIIKEIYAF 65

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +  +F +   S+   P  FY     FR E   +    R REF 
Sbjct: 66  KDKGGRDLALRPELTAPVMRMFVNEC-SHLPKPLRFYYFSNCFRYERPQKG---RYREFW 121

Query: 157 MKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF-IVLA 214
              A      +PE         +    +      L    +      +      E  + L 
Sbjct: 122 QFGAELIGSNSPEAEAEVILLSYRMLEKAGVSFELSIGDVNLLRYVLRDIPEKEAAMRLI 181

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D  E +   +            T        +    +    Y  +      ++ D+L E 
Sbjct: 182 DKEEFETLRNLLAKYDREEIYETILQLGEIESVEEAEEVVDYDFSHLKKLCEILDAL-EL 240

Query: 275 KRVSARGIEVGHIFYFGT---KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           K      +  G  +Y GT    Y+  + A  +   G  + +     G        A+   
Sbjct: 241 KYFVDFTVARGLDYYTGTVFEYYAEGLGAQKQICGGGSYRLAKLFGGEDVPGTGFAIGFD 300

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                    P    P  +  +              KI  RL + G  V  D MG  +  Q
Sbjct: 301 RVMELFTKSPKYEPPVVVVSLVESKD-------AFKIAERLRENGVKVVVDVMGRNLKKQ 353

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            + A+ +     VI+G K +      IK  +TG ++ +S EE +     +
Sbjct: 354 MSFANDISAEYAVIIGKKELESGTFSIKDLVTGKQKSLSFEEAVELIKSK 403


>gi|229163896|ref|ZP_04291836.1| Glycyl-tRNA synthetase [Bacillus cereus R309803]
 gi|228619517|gb|EEK76403.1| Glycyl-tRNA synthetase [Bacillus cereus R309803]
          Length = 458

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/439 (11%), Positives = 131/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 31  WDYGPLGIELKNNVKKAWWKKFIQESPHNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 91  KCKARHRADKLIEDALDAKGIEMVVDGLTFDQMADLMKEHEVKCPDCGSEEFTEIRQFNL 150

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E+  +
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMHEESMRLRDHGEEELS 268

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     K      E   V++R       F              +      + +  
Sbjct: 269 HYSNATTDIEFKFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 323

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 324 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 380

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 381 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 438

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 439 EQVRMPISELKGFLEKKIQ 457


>gi|110004380|emb|CAK98718.1| probable glycyl-trna synthetase, protein [Spiroplasma citri]
          Length = 455

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/429 (12%), Positives = 130/429 (30%), Gaps = 30/429 (6%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG +   N+  +  +         +      L + ++W  SG   ++     +  
Sbjct: 32  WDFGPLGVELERNLKNLWWQHFITKSKYNVGLDSAILMNNNVWKASGHLGNFADPLLDCK 91

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD--ELRPRFGVMRS 152
           +   R     +    + ++    + +                    D  E+R    + ++
Sbjct: 92  KCKTRMRVDKLIEDNYPKLNCGGWSNEQLETFITEKNILCPNCGGHDFTEIRQFELMFKT 151

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGG 204
            + +++D  S       +       F +  R   +         G            I  
Sbjct: 152 NQGVIEDEKSVVYLRPETAQGIFVNFKNVQRSLRKKIPFGVGQIGKSFRNEITPGNFIFR 211

Query: 205 DLSHEFIV---LADTGETQVFCSKDFMDFPIPSENTDFD-DIISLNSIVEQWTAPYAATS 260
               E +      D+ E   +      +     E  +   +            A YA  +
Sbjct: 212 TREFEQMELEFFYDSNEKVNWFEYWVKEVTKFLELINLKSENYRFREHNADELAHYAKRT 271

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                K    + E   ++ RG          ++ S    +       +     +    +G
Sbjct: 272 IDIEYKFPFGIGELWGIADRGDYDLRRH---SEMSKNDLSYLNQETNEKIMPHVIEPSVG 328

Query: 321 AMRVVAAVIESSHDGKGIIWPDSV------APFKISLINIKAHDQVCRDACEKIYARLSK 374
             R++ A++  ++  + +   ++              I +    +       ++Y +L  
Sbjct: 329 VGRLMLAILYDAYHVEKVDENETRIVLKLSPLLAPYQIAVIPLSKQLNSETYQLYEKLL- 387

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           V     +D+ G  IG ++   D +G P  V V      D KV +++R T  +E +++  +
Sbjct: 388 VHFQCTYDETG-NIGKRYRRQDAIGTPFCVTVDFDTQEDQKVTVRNRDTMKQERVAITNL 446

Query: 435 INYASHRFS 443
            +Y +    
Sbjct: 447 ESYFTAALK 455


>gi|261200038|ref|XP_002626420.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239594628|gb|EEQ77209.1| prolyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
          Length = 555

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 67/186 (36%), Positives = 105/186 (56%), Gaps = 1/186 (0%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
            LPLG +  + +  ++ +     GA ++S+ ++ S  LW +SGR      E  +  DR +
Sbjct: 1   MLPLGLRVQEKLERLVDKHMRTLGASKLSLSSISSQALWEKSGRLKK-DSEFFKFQDRKE 59

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
              +  PTHEE +T +    + SYR+LP   YQI  K+RDE RPR G++R REF+MKD Y
Sbjct: 60  ARFLLAPTHEEEITSLVAGAVNSYRDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLY 119

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +FD +PE +  +Y+ +  +Y+R+F  L +  +   A+SG +GG LSHEF +    GE  +
Sbjct: 120 TFDYSPETAIKTYSAVKKAYIRLFDELRIPYMIATADSGNMGGSLSHEFHLPNPKGEDTI 179

Query: 222 FCSKDF 227
                 
Sbjct: 180 ISCSSC 185



 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 96/193 (49%), Gaps = 21/193 (10%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-------------KGADGKDHYVQM 314
                E+   +   IE+ H F+ GT+YS  ++A+                       ++M
Sbjct: 365 CSKCGEHTVQTHTAIELAHTFHLGTRYSKVLNASVAVPLTLLKDGSKTDDTSTLSVPLEM 424

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL-- 372
           G +GIG  R+++AV ++  D KG+ WP ++APF++ +I     D+      E++Y  +  
Sbjct: 425 GCHGIGVSRMISAVADTLADSKGLNWPRAIAPFEVIIIP----DKGLEGEAERVYDDING 480

Query: 373 SKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIREDMS 430
            ++G  D   DD    I  +   ADL+G+P+ +++G  + +++K+E++ R    +RE +S
Sbjct: 481 RQIGAVDAIVDDRDRNIPWKLRDADLIGYPVIIVIGKSWKTENKLEVQCRRLNNLRETVS 540

Query: 431 LEEVINYASHRFS 443
           L+++  +      
Sbjct: 541 LQDLHPFTKSLLD 553


>gi|332708991|ref|ZP_08428961.1| histidyl-tRNA synthetase [Lyngbya majuscula 3L]
 gi|332352180|gb|EGJ31750.1| histidyl-tRNA synthetase [Lyngbya majuscula 3L]
          Length = 427

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 65/416 (15%), Positives = 118/416 (28%), Gaps = 28/416 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V AI ++  NR    E+  P  +  +L+        D  GKEM    DR        
Sbjct: 21  WQQVEAIAQQILNRAAYREIRPPIFERTELFERGIGEATDVVGKEMYTFNDRATPPRSVT 80

Query: 108 PTHEE--VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFD 164
              E    +   +  +           +     FR E        R R+F          
Sbjct: 81  LRPEGTAGVVRAYIQNSLYAAGGVQRLWYTGPMFRYENPQAG---RQRQFHQLGVEVIGS 137

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-----TGET 219
             P                  + LGL ++ +   S     D       L D       E 
Sbjct: 138 RDPRADAEVIAIAIDIL----NTLGLVNLKLDLNSVGSTEDRQQYRQALVDYLTPYKDEL 193

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                      P+   ++       +           ++ S  H +++   L +N     
Sbjct: 194 DEDSQDRLTRNPLRILDSKDKRTQEIAQDAPSILDYLSSESQSHFDQVKQLLQDNGISYQ 253

Query: 280 ------RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 RG++      F    S  + A      G  +   +   G G             
Sbjct: 254 LNPRLVRGLDYYTHTAF-EIISDDLGAQATVCGGGRYDGLVHELG-GNKTPAVGWAIGLE 311

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
               ++     +P       + +  +V +    K+  +L + G  V  D  G   G QF 
Sbjct: 312 RLVILLQQLQASPTLALDFYLVSRGEVAQAQGLKLAQQLRQAGLAVELDLSGSAFGKQFK 371

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY---ASHRFSNNR 446
            AD  G    +++G      + V +K   +G +E M+  ++++       +    R
Sbjct: 372 RADRSGAVACLVIGDAEAQSNTVNLKWLASGEQETMTQADLLDKTDQLKGQIEQLR 427


>gi|83814713|ref|YP_446435.1| glycyl-tRNA synthetase [Salinibacter ruber DSM 13855]
 gi|83756107|gb|ABC44220.1| glycyl-tRNA synthetase [Salinibacter ruber DSM 13855]
          Length = 512

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/468 (11%), Positives = 137/468 (29%), Gaps = 63/468 (13%)

Query: 30  GMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNRTGAIE-----MSVPTLQSAD 78
           G I Q S    G+   Y + P+G +   NV     +              +    +    
Sbjct: 50  GFIVQSSEIYGGLSATYDYGPMGVELKRNVKEKWWQSMV---YQNDDIVGLDASIMMHPK 106

Query: 79  LWVESGRYDSYGKEMLRLA--------------------------------DRNDKAMIY 106
            W  SG  +++   ++                                   +R  +A+  
Sbjct: 107 TWDASGHTEAFNDPLIDDKASGNRYRADELIENYIRALREEGEEAHAEAVRERLVEALNA 166

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           G    + +  I               +    +F        G +  +  +     +    
Sbjct: 167 GEEMNDALHAIIMDEEIPAPESGAFDWTDVRQFNLMFETEMGPVDGQT-VFLRPETAQGI 225

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET--QVFCS 224
                ++     +       ++G            +      E + +    +   ++   
Sbjct: 226 FVNFHNAREPARLHVPFGVAQIGKAFRNEIVARQFVFRMREFEQMEMQYFVKPGTELDWY 285

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           + + +  +    +   D  +L        + YA  +            E + + +R    
Sbjct: 286 EQWKERRMKWHESLGIDPSNLRFHEHDQLSHYANAAVDIQYDFPIGWKELEGIHSRTDYD 345

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH--------DGK 336
                   +YS    + +   + + +   +     G  R +  V+  ++           
Sbjct: 346 LSRHE---EYSGKKMSYYDPWEEERYTPYVVETSTGLDRTLFMVLCDAYYEEEVKGDTRS 402

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            + +   VAP +  +  +    +   D   +I   L++   +V +DD G  +G ++   D
Sbjct: 403 VLQFHPEVAPVRAGIFPLTDK-EGLPDIAREIEDDLNQH-FNVRYDDRG-SMGKRYRRQD 459

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             G P  + V    + D  V ++ R T  ++ ++++++  Y   + +N
Sbjct: 460 EAGTPFCITVDFDTLDDQTVTVRDRDTMEQDRVAIDQLATYIFDQTAN 507


>gi|160872281|ref|ZP_02062413.1| glycyl-tRNA synthetase [Rickettsiella grylli]
 gi|159121080|gb|EDP46418.1| glycyl-tRNA synthetase [Rickettsiella grylli]
          Length = 459

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 67/461 (14%), Positives = 134/461 (29%), Gaps = 46/461 (9%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIRE--EQNRTGAIEMS 70
           EI S  L  R G I   +      +G+Y + PLG +  +N+     +     R     + 
Sbjct: 8   EIVS--LCKRRGFIFPSAEIYGGLQGVYDYGPLGVELKNNLKMAWWKSNVYERDDIYGLD 65

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
              L    ++  SG   ++   ++       +         +  T       +       
Sbjct: 66  SAVLTHQKIFYYSGHERTFADLLVDCKQCKKRWRFDHLKKGQCETCGSTQLTEPRTFNMM 125

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
               I                ++          D           ++  ++         
Sbjct: 126 FKTTIGPLEDSNAFAYLRPETAQGIFTNFKNIMDSMSPRFPFGIAQIGKAFRNEITPRNF 185

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                  E   I      EF V     E       +       ++  +   +  LN    
Sbjct: 186 IFRVREFEQLEI------EFFVKPGEDEKWHHYWVESRLTWWKNQGLNPQRLKLLNQNAS 239

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK-----------YSLPMS 299
           +  A YA  +     K      E + +S R          G                   
Sbjct: 240 EL-AHYAKATTDILYKFPHGFEELEGISNRTDYDLGSHTQGQNGLNIHANISVNKESIAK 298

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKIS 350
            + +   G      +     G  R V A++  +++            +     +AP KI+
Sbjct: 299 LSVQDPPGSHFIPYVIEPSAGLDRGVLALLTEAYEEETLKDGKKRFVLKIQPHLAPVKIA 358

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVGS- 408
           +I +K +D    +    +   +  +G   + ++D G  IG  +   D +G PL + +   
Sbjct: 359 IIPLKKNDSGLVEKANVLKHAIQVLGLGRIAFEDTG-NIGKSYRRHDEIGTPLCITIDFD 417

Query: 409 -----KFVSD-SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                K V +   V +++R +  +  + L E+ NY  + FS
Sbjct: 418 TIGKSKNVENHDTVTVRYRDSMEQTRIHLSELENYIKNYFS 458


>gi|14590213|ref|NP_142278.1| histidyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|3915065|sp|O58028|SYH_PYRHO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|3256679|dbj|BAA29362.1| 431aa long hypothetical histidyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 431

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 69/439 (15%), Positives = 127/439 (28%), Gaps = 35/439 (7%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           MI +  KG   +LP        V   IRE     G  E+  P ++   L+   SG  +  
Sbjct: 1   MIERV-KGTRDFLPEDMAKRRWVFEKIREVFEAYGFKEILTPVMEYTKLFQLRSG--EEV 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            K++    D+  + +   P     +  ++ +  +        +Y   +   +E +     
Sbjct: 58  VKQLYAFKDKGGRDVSLRPDMTSSVARLYVNSFQMAPKPIKWYYIANMFRYEEPQSG--- 114

Query: 150 MRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA----------E 198
            R REF              +          SYL    R    +I  R            
Sbjct: 115 -RYREFWQAGVELIGSDKVEADAEVIALFVESYLSTGLRDFTVNIGDRILLDEFAGMLGV 173

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-----EQWT 253
           S  IG     +        E      +  +      +  +  +I      V     E + 
Sbjct: 174 SDDIGLMRIIDKRDKLSQEEFINLLKEFGLGESEIEKVLELVEIKGRPDNVLPLAEELFK 233

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----DGKD 309
           +  A        KL D L          I++G    F    S+   A             
Sbjct: 234 SKKAKEEISKLYKLTDLLEWYGVKDWIRIDLGIARGFDYYTSIVFEAISPNELGIGSIGG 293

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV-----APFKISLINIKAHDQVCRDA 364
                    I   +   A   +    + +   +             +  I   D      
Sbjct: 294 GGRYDNLIEIFGGKPTPATGFAIGIERLLPILEWKGLIPKPQTGPEVFVIPLKDME--KV 351

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              I  +L +       +  G ++G     A+ +G  L +IVG + V    V I+   +G
Sbjct: 352 AINIAVKLRREKIKTDIELSGRKLGKALDYANRVGAKLVIIVGKRDVERGVVTIRDMESG 411

Query: 425 IREDMSLEEVINYASHRFS 443
            + ++SL E+++   +   
Sbjct: 412 EQYNVSLNEIVDKVKNLLK 430


>gi|322697644|gb|EFY89422.1| prolyl-tRNA synthetase [Metarhizium acridum CQMa 102]
          Length = 506

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 13/184 (7%)

Query: 269 DSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRV 324
           DS P  +       R +E+GH FY G++YS P   +    + K    V+MG YGIG  R+
Sbjct: 325 DSCPRCEPGSLRIHRALELGHTFYLGSRYSKPFELSVTFPNSKAPVPVEMGCYGIGVSRI 384

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV-----GCDV 379
             AV E   D +G+ WP ++APF+I +I     +    +     + +L+       G D 
Sbjct: 385 FGAVAEHKADERGLNWPRAIAPFEIVVIPTSGVNSQTLEF----HDKLTSWSSSGPGFDA 440

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  E  G +   AD+ G+P+ +++G  +      E++ R    +E++++E++  + +
Sbjct: 441 VLDDRKETFGWKMQDADMTGYPVTIVLGKAWRERGVCEVQCRSLSSKENIAVEDLPVHLN 500

Query: 440 HRFS 443
              S
Sbjct: 501 ALLS 504



 Score = 93.3 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 95/173 (54%), Gaps = 2/173 (1%)

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE--MLRLADRNDKAMIYGPTHEEVMTDIF 118
               GA  +S+ T+ S +LW  SGR D    E  + RL DR    ++  PTHEE +T + 
Sbjct: 1   MESIGASRLSLSTITSEELWRRSGRLDRVSSEAQLFRLTDRKQVPIMLSPTHEEEITTLV 60

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            S +KS+++LP   YQ   K+RDE+RPR G++RSREF+MKD Y+FD + E +  +Y  + 
Sbjct: 61  ASALKSFKDLPLRLYQTTRKYRDEMRPRHGLLRSREFIMKDLYTFDTSFESAIDTYKCVS 120

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
            +Y   F  + +  +   A SG +GGD SHE+ +    GE +V          
Sbjct: 121 RAYRAFFAEMRIPILVAEASSGDMGGDYSHEYHLAHPIGEDRVISCDSCEYTA 173


>gi|65316905|ref|ZP_00389864.1| COG0423: Glycyl-tRNA synthetase (class II) [Bacillus anthracis str.
           A2012]
 gi|228917544|ref|ZP_04081089.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228936204|ref|ZP_04099004.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228981598|ref|ZP_04141894.1| Glycyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228988159|ref|ZP_04148257.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229124457|ref|ZP_04253644.1| Glycyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|229141633|ref|ZP_04270164.1| Glycyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|229158516|ref|ZP_04286576.1| Glycyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|229199064|ref|ZP_04325747.1| Glycyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228584335|gb|EEK42470.1| Glycyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228624952|gb|EEK81719.1| Glycyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228641831|gb|EEK98131.1| Glycyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|228659005|gb|EEL14658.1| Glycyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228771570|gb|EEM20038.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228778083|gb|EEM26354.1| Glycyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228823451|gb|EEM69283.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228842111|gb|EEM87213.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 455

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/439 (11%), Positives = 131/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 28  WDYGPLGIELKNNVKKAWWKKFIQESPYNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 87

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 88  KCKARHRADKLIEDALDAKGIEMVVDGLTFDQMADLMKEHEVKCPDCGSEEFTEIRQFNL 147

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 148 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 207

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E+  +
Sbjct: 208 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMTEESMRLRDHGEEELS 265

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     K      E   V++R       F              +      + +  
Sbjct: 266 HYSNATTDIEFKFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 320

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 321 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 377

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 378 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 435

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 436 EQVRMPISELKGFLEKKIQ 454


>gi|294508373|ref|YP_003572431.1| glycyl-tRNA synthetase [Salinibacter ruber M8]
 gi|294344701|emb|CBH25479.1| glycyl-tRNA synthetase [Salinibacter ruber M8]
          Length = 512

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/468 (11%), Positives = 138/468 (29%), Gaps = 63/468 (13%)

Query: 30  GMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNRTGAIE-----MSVPTLQSAD 78
           G I Q S    G+   Y + P+G +   NV     +              +    +    
Sbjct: 50  GFIVQSSEIYGGLSATYDYGPMGVELKRNVKEKWWQSMV---YQNDDIVGLDASIMMHPK 106

Query: 79  LWVESGRYDSYGKEMLRLA--------------------------------DRNDKAMIY 106
            W  SG  +++   ++                                   +R  +A+  
Sbjct: 107 TWDASGHTEAFNDPLIDDKASGNRYRADELIENYIRALREEGEEAHAEAVRERLVEALNA 166

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           G    + +  I               +    +F        G +  ++ +     +    
Sbjct: 167 GEEMNDALHAIIMDEEIPAPESGAFDWTDVRQFNLMFETEMGPVDGQK-VFLRPETAQGI 225

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET--QVFCS 224
                ++     +       ++G            +      E + +    +   ++   
Sbjct: 226 FVNFHNAREPARLHVPFGVAQIGKAFRNEIVARQFVFRMREFEQMEMQYFVKPGTELDWY 285

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
           + + +  +    +   D  +L        + YA  +            E + + +R    
Sbjct: 286 EQWKERRMKWHESLGIDPSNLRFHEHDQLSHYANAAVDIQYDFPIGWKELEGIHSRTDYD 345

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH--------DGK 336
                   +YS    + +   + + +   +     G  R +  V+  ++           
Sbjct: 346 LSRHE---EYSGKKMSYYDPWEEERYTPYVVETSTGLDRTLFMVLCDAYYEEEVKGDTRS 402

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            + +   VAP +  +  +    +   D   +I   L++   +V +DD G  +G ++   D
Sbjct: 403 VLQFHPEVAPVRAGIFPLTDK-EGLPDIAREIEDDLNQH-FNVRYDDRG-SMGKRYRRQD 459

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             G P  + V    + D  V ++ R T  ++ ++++++  Y   + +N
Sbjct: 460 EAGTPFCITVDFDTLDDQTVTVRDRDTMEQDRVAIDQLATYIFDQTAN 507


>gi|218900065|ref|YP_002448476.1| glycyl-tRNA synthetase [Bacillus cereus G9842]
 gi|218541497|gb|ACK93891.1| glycyl-tRNA synthetase [Bacillus cereus G9842]
          Length = 458

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/439 (11%), Positives = 131/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 31  WDYGPLGIELKNNVKKAWWKKFIQESPHNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 91  KCKARHRADKLIEDALDAKGIEMVVDGLTFDQMADLMKEHEVKCPDCGSEEFTEIRQFNL 150

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E+  +
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMTEESMRLRDHGEEELS 268

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     K      E   V++R       F              +      + +  
Sbjct: 269 HYSNATTDIEFKFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 323

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 324 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 380

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 381 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 438

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 439 EQVRMPISELKGFLEKKIQ 457


>gi|228910750|ref|ZP_04074559.1| Glycyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|228848701|gb|EEM93546.1| Glycyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
          Length = 487

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/439 (11%), Positives = 131/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 60  WDYGPLGIELKNNVKKAWWKKFIQESPHNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 119

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 120 KCKARHRADKLIEDALDAKGIEMVVDGLTFDQMADLMKEHEVKCPDCGSEEFTEIRQFNL 179

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 180 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 239

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E+  +
Sbjct: 240 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMTEESMRLRDHGEEELS 297

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     K      E   V++R       F              +      + +  
Sbjct: 298 HYSNATTDIEFKFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 352

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 353 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 409

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 410 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 467

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 468 EQVRMPISELKGFLEKKIQ 486


>gi|323475075|gb|ADX85681.1| threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus REY15A]
 gi|323477807|gb|ADX83045.1| threonyl-tRNA synthetase editing domain protein [Sulfolobus
           islandicus HVE10/4]
          Length = 386

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 3/139 (2%)

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
            +V      +   R+V   I  S   +    PD + P ++ L+ +K       D   ++ 
Sbjct: 239 WWVNESRTYVDVGRLVYYFILESIRKQPPTLPDWLNPIQVRLLPVKKD---FLDFSIQVA 295

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            RL K G  V  DD+ + +G++   A     PL +I+G + V  S + +K R    ++ M
Sbjct: 296 ERLRKEGIRVNIDDLDDSLGNKIRRAGTEWIPLVIIIGEREVKTSTLTVKIRANNEQKSM 355

Query: 430 SLEEVINYASHRFSNNRPV 448
           S+EE++          + +
Sbjct: 356 SIEELVKEIKDEVKERQNL 374


>gi|75760257|ref|ZP_00740310.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228903415|ref|ZP_04067542.1| Glycyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
 gi|228968019|ref|ZP_04129027.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|74492252|gb|EAO55415.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228791690|gb|EEM39284.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228856190|gb|EEN00723.1| Glycyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
          Length = 487

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 52/439 (11%), Positives = 131/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 60  WDYGPLGIELKNNVKKAWWKKFIQESPHNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 119

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 120 KCKARHRADKLIEDALDAKGIEMVVDGLTFDQMADLMKEHEVKCPDCGSEEFTEIRQFNL 179

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 180 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 239

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E+  +
Sbjct: 240 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMTEESMRLRDHGEEELS 297

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     K      E   V++R       F              +      + +  
Sbjct: 298 HYSNATTDIEFKFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 352

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 353 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 409

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 410 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 467

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 468 EQVRMPISELKGFLEKKIQ 486


>gi|118618885|ref|YP_907217.1| glycyl-tRNA synthetase [Mycobacterium ulcerans Agy99]
 gi|118570995|gb|ABL05746.1| glycyl-tRNA synthetase GlyS [Mycobacterium ulcerans Agy99]
          Length = 459

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 58/433 (13%), Positives = 131/433 (30%), Gaps = 36/433 (8%)

Query: 40  YSWLPLGQKALDNVNA-IIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM---- 93
           + + PLG +  +N+     R     R   + +    +   ++WV SG  + +   +    
Sbjct: 32  WDYGPLGVELKENIKRQWWRSVVTGREDVVGLDSSIILPREVWVASGHVEVFHDPLVESL 91

Query: 94  ----LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT----FYQIQLKFRDELRP 145
                  AD   +A                   ++     +T    F  +   +   +  
Sbjct: 92  ITHKRYRADHLIEAYEAKHGQPPPNGLADIRDPETGEPGQWTEPREFNMMLKTYLGPIET 151

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+   R    +  +        +        +  +    R  +        +      
Sbjct: 152 EEGLHYLRPETAQGIFVNFANVLTTSRKKPPFGIGQIGKSFRNEITPGNFIFRTREFEQM 211

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               F+  +   E   +     + + +     D +++       E+ +     T D+  +
Sbjct: 212 EMEFFVEPSTAKEWHQYWIDTRLQWYV-DLGIDAENLRLFEHPKEKLSHYSDRTVDIEYK 270

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             F   P  +     G+     F   T  K+S    + +   +   +   +     G  R
Sbjct: 271 FGFVGNPWGELE---GVANRTDFDLSTHSKHSGTELSFYDQVEDVRYTPYVIEPAAGLTR 327

Query: 324 VVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              A +  ++                       +AP K +++ +  H          + A
Sbjct: 328 SFMAFLIDAYTEDEAPNAKGGVDKRTVLRLDPRLAPVKAAVLPLSRH-ADLSPKARDLAA 386

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K   ++ +DD G  IG ++   D +G P  V V    + D  V ++ R    +E + 
Sbjct: 387 ELRKYW-NIDFDDAGA-IGRRYRRQDEIGTPFCVTVDFDSLEDDAVTVRERDAMTQERIG 444

Query: 431 LEEVINYASHRFS 443
           + +V +Y + R  
Sbjct: 445 IAKVADYLAPRLK 457


>gi|30264956|ref|NP_847333.1| glycyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|42784099|ref|NP_981346.1| glycyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|47530451|ref|YP_021800.1| glycyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|47566949|ref|ZP_00237666.1| glycyl-tRNA synthetase [Bacillus cereus G9241]
 gi|49187774|ref|YP_031027.1| glycyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|52140610|ref|YP_086219.1| glycyl-tRNA synthetase [Bacillus cereus E33L]
 gi|118480007|ref|YP_897158.1| glycyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|165870894|ref|ZP_02215546.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167634943|ref|ZP_02393261.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167639989|ref|ZP_02398257.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170685642|ref|ZP_02876865.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170707043|ref|ZP_02897500.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177652334|ref|ZP_02934837.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190567164|ref|ZP_03020079.1| glycyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|196032884|ref|ZP_03100297.1| glycyl-tRNA synthetase [Bacillus cereus W]
 gi|196040501|ref|ZP_03107801.1| glycine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|196044021|ref|ZP_03111258.1| glycyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|206976453|ref|ZP_03237360.1| glycyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217962381|ref|YP_002340953.1| glycyl-tRNA synthetase [Bacillus cereus AH187]
 gi|218906113|ref|YP_002453947.1| glycyl-tRNA synthetase [Bacillus cereus AH820]
 gi|222098368|ref|YP_002532426.1| glycyl-tRNA synthetase [Bacillus cereus Q1]
 gi|225866890|ref|YP_002752268.1| glycyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|227817684|ref|YP_002817693.1| glycyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|228929941|ref|ZP_04092954.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228942077|ref|ZP_04104618.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228948637|ref|ZP_04110915.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228975007|ref|ZP_04135567.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|229187155|ref|ZP_04314301.1| Glycyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|229602508|ref|YP_002869159.1| glycine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254687247|ref|ZP_05151104.1| glycyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254725260|ref|ZP_05187043.1| glycyl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|254735416|ref|ZP_05193124.1| glycyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740683|ref|ZP_05198374.1| glycyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254753055|ref|ZP_05205091.1| glycyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254761397|ref|ZP_05213418.1| glycyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|300117973|ref|ZP_07055730.1| glycyl-tRNA synthetase [Bacillus cereus SJ1]
 gi|59798501|sp|Q632E8|SYG_BACCZ RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|59798563|sp|Q72YG8|SYG_BACC1 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|59798583|sp|Q81XT3|SYG_BACAN RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|30259633|gb|AAP28819.1| glycine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|42740030|gb|AAS43954.1| glycyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|47505599|gb|AAT34275.1| glycyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|47556267|gb|EAL14601.1| glycyl-tRNA synthetase [Bacillus cereus G9241]
 gi|49181701|gb|AAT57077.1| glycyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|51974079|gb|AAU15629.1| glycine--tRNA ligase (glycyl-tRNA synthetase) [Bacillus cereus
           E33L]
 gi|118419232|gb|ABK87651.1| glycyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|164713403|gb|EDR18928.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167512070|gb|EDR87448.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167529693|gb|EDR92442.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170128146|gb|EDS97016.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170670106|gb|EDT20846.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172082340|gb|EDT67406.1| glycyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190561668|gb|EDV15638.1| glycyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|195994313|gb|EDX58268.1| glycyl-tRNA synthetase [Bacillus cereus W]
 gi|196025357|gb|EDX64027.1| glycyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|196028633|gb|EDX67240.1| glycine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|206745377|gb|EDZ56777.1| glycyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217067915|gb|ACJ82165.1| glycyl-tRNA synthetase [Bacillus cereus AH187]
 gi|218535956|gb|ACK88354.1| glycyl-tRNA synthetase [Bacillus cereus AH820]
 gi|221242427|gb|ACM15137.1| glycine--tRNA ligase (glycyl-tRNA synthetase) [Bacillus cereus Q1]
 gi|225789327|gb|ACO29544.1| glycine--tRNA ligase [Bacillus cereus 03BB102]
 gi|227002360|gb|ACP12103.1| glycine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|228596324|gb|EEK53998.1| Glycyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|228784712|gb|EEM32731.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228810944|gb|EEM57287.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228817593|gb|EEM63677.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228829717|gb|EEM75341.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229266916|gb|ACQ48553.1| glycine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|298724627|gb|EFI65312.1| glycyl-tRNA synthetase [Bacillus cereus SJ1]
 gi|324328794|gb|ADY24054.1| glycyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
 gi|326942679|gb|AEA18575.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 458

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 52/439 (11%), Positives = 131/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 31  WDYGPLGIELKNNVKKAWWKKFIQESPYNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 91  KCKARHRADKLIEDALDAKGIEMVVDGLTFDQMADLMKEHEVKCPDCGSEEFTEIRQFNL 150

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E+  +
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMTEESMRLRDHGEEELS 268

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     K      E   V++R       F              +      + +  
Sbjct: 269 HYSNATTDIEFKFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 323

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 324 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 380

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 381 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 438

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 439 EQVRMPISELKGFLEKKIQ 457


>gi|228993636|ref|ZP_04153543.1| Glycyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228766065|gb|EEM14712.1| Glycyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 458

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/439 (12%), Positives = 130/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   WV SG   ++   M+   
Sbjct: 31  WDYGPLGIELKNNVKKAWWKKFIQESPYNVGLDAAILMNPKTWVASGHVGNFNDPMIDCK 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 91  KCKARHRADKLIEDALDAKGIEMIVDGLTFDQMAGLMKEHEVKCPDCGSEDFTEIRQFNL 150

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F      ++ +       ++ + L    E+  +
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDLEWFTFWRNTCKNWLL--SLGMHEESMRLRDHGEEELS 268

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     K      E   V++R       F              +      + +  
Sbjct: 269 HYSNATTDIEFKFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 323

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 324 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 380

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 381 AGEVFAEL-AKDFVVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 438

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 439 EQVRMPISELKGFLEKKIQ 457


>gi|229020149|ref|ZP_04176925.1| Glycyl-tRNA synthetase [Bacillus cereus AH1273]
 gi|228741158|gb|EEL91380.1| Glycyl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 455

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/439 (11%), Positives = 131/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 28  WDYGPLGIELKNNVKKAWWKKFIQESPYNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 87

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 88  KCKARHRADKLIEDALDAKGIEMVVDGLTFDQMADLMKEHEVKCPDCGSQEFTEIRQFNL 147

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 148 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 207

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E+  +
Sbjct: 208 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMTEESMRLRDHGEEELS 265

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     +      E   V++R       F              +      + +  
Sbjct: 266 HYSNATTDIEFRFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 320

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 321 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 377

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 378 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 435

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 436 EQVRMPISELKGFLEKKIQ 454


>gi|134046820|ref|YP_001098305.1| histidyl-tRNA synthetase [Methanococcus maripaludis C5]
 gi|166228581|sp|A4G0V7|SYH_METM5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|132664445|gb|ABO36091.1| histidyl-tRNA synthetase [Methanococcus maripaludis C5]
          Length = 418

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 67/421 (15%), Positives = 127/421 (30%), Gaps = 23/421 (5%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSY 89
           M  +  KG   +LP   K    +   +R+  +     E++ PT +S +L   ++G  D  
Sbjct: 3   MFQKP-KGTRDFLPEEMKKRKVIEKKLRKVFDSYNFSEINTPTFESFELLSKKTG--DEI 59

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
             ++    D  ++ M   P     +   + +  K+    P   Y     FR E       
Sbjct: 60  RTQLFVFKDHGNREMGLRPELTSSVARFYINEFKN-TPKPVKLYYFTNCFRYENPQAG-- 116

Query: 150 MRSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP--------MRAESG 200
            R REF    +       P       N        I     +             + +  
Sbjct: 117 -RYREFWQMGSELIGSKKPIADAEVINMAIDGLKEINMDFEINIGHLGVLKGVFEKYDLS 175

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS------LNSIVEQWTA 254
              G      I   D    +   S+   +  I      F+ +        ++ + E+   
Sbjct: 176 DDEGTEIRRLIDKEDMEGLKTVLSRIESEKNIEISKKVFEVLELKGGREVISKLKEKLAE 235

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             ++   + N         ++ +   GI  G  +Y G  + +                  
Sbjct: 236 FESSVEALENLDSILEFVPHEYIINFGIARGLDYYTGMVFEIYGKREGARQVCGGGRYDN 295

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                      A       D   +   D     +   +       +  + C KI   L  
Sbjct: 296 LIELFEGEPSPAVGFAYGFDRIMLNIDDFQVEEEAIFVVPVKSSDMLLNECFKIAKTLRD 355

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V  D MG ++      A+  G    +IVG   +S+ KV +K+  TG +  + L ++
Sbjct: 356 AGKSVELDLMGRKLNKALNYANNKGIKKVLIVGENDISEGKVALKNMETGEQSLIELNDI 415

Query: 435 I 435
           +
Sbjct: 416 L 416


>gi|254819377|ref|ZP_05224378.1| glycyl-tRNA synthetase [Mycobacterium intracellulare ATCC 13950]
          Length = 463

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 56/433 (12%), Positives = 133/433 (30%), Gaps = 36/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           + + PLG +  +N+           R   + +    +    +WV SG  + +   ++   
Sbjct: 36  WDYGPLGVEFKENIKRQWWRAVVSGRDDVVGLDSSIILPRQVWVASGHVEVFHDPLVESL 95

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN----------LPFTFYQIQLKFRDELRP 145
           +  +  +A      +E        + +   R+           P  F  +   +   +  
Sbjct: 96  ITHKRYRADHLIEAYEAKHGHPPPNGLADIRDPDTGEPGQWTEPREFNMMLKTYLGPIET 155

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+   R    +  +        +        +  +    R  +        +      
Sbjct: 156 EEGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQIGKSFRNEITPGNFIFRTREFEQM 215

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               F+  +   E   +     + + +     D +++       ++ +     T D+  +
Sbjct: 216 EMEFFVEPSTAKEWHQYWIDTRLQWYVE-LGIDPENLRLFEHPADKLSHYSDRTVDIEYK 274

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             F   P  +     G+     F   T  K+S    + +  A    +   +     G  R
Sbjct: 275 FGFAGNPWGELE---GVANRTDFDLATHSKHSGVDLSFYDQATDARYIPYVIEPAAGLTR 331

Query: 324 VVAAVIES-------------SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              A +                     +     +AP K +++ +  H          + A
Sbjct: 332 SFMAFLIDAYVEDEAPNAKGKMEKRTVLRLDPRLAPVKAAVLPLSRH-ADLSPKARDLAA 390

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L +   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R    +E ++
Sbjct: 391 ELRQFW-NIDFDDAGA-IGRRYRRQDEIGTPFCVTVDFDSLEDNAVTVRRRDDMTQERVA 448

Query: 431 LEEVINYASHRFS 443
           +  V +Y + R  
Sbjct: 449 MNTVADYLAARLK 461


>gi|291533405|emb|CBL06518.1| histidyl-tRNA synthetase [Megamonas hypermegale ART12/1]
          Length = 420

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 65/403 (16%), Positives = 122/403 (30%), Gaps = 21/403 (5%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +  +IR+   + G  E+  P  +  +L+        D   KEM    DR ++++   P +
Sbjct: 23  LENLIRKLCGQYGYREIRTPIFEHTELFQRGIGETTDVVEKEMYTFTDRGNRSITLRPEN 82

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
                  +  +           + I   FR +        R REF      +        
Sbjct: 83  TAAAVRSYLENKLYADTNLCKLFYIGSMFRYDRPQAG---RYREFHQFGVEALGEANPAV 139

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHEFIVLADTGETQVFCS 224
                      ++    LGLK I +   S       P+      EF       E    C 
Sbjct: 140 DAEI---ISLAVQFLKDLGLKDIKLLLNSVGCPKCRPVYRQRLQEFFKPV-IDEMCDDCK 195

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVS 278
             +   P+   +   +    L       T       + H  K+ + L       E     
Sbjct: 196 SRYDRNPMRLLDCKNEKCKELAQDAPAITDCLCDECNDHFHKVQEFLTAAGIEFELDPGL 255

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RG++      F  KY    + +     G+   +     G     V  A           
Sbjct: 256 VRGLDYYTKTAFELKYVPLGAQSAVLGGGRYDGLIEECGGKSTPAVGFATGLERVLLALE 315

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +          + + I A     +    +I A L + G     D  G  + +Q   A+  
Sbjct: 316 MQNLLPETNYDTDVFIVALGDTVQAKAFEILANLRRGGFKAAMDFAGRSMKAQMKQANKA 375

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                +I+G   +  + V +K+     +E +S++E++N  +  
Sbjct: 376 NAKFTIILGEDELQANSVVLKNMNESTQETISIDELLNKLTTL 418


>gi|157374572|ref|YP_001473172.1| histidine--tRNA ligase [Shewanella sediminis HAW-EB3]
 gi|189082312|sp|A8FT71|SYH_SHESH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|157316946|gb|ABV36044.1| Histidine--tRNA ligase [Shewanella sediminis HAW-EB3]
          Length = 424

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 63/418 (15%), Positives = 123/418 (29%), Gaps = 16/418 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        +  ++RE  +  G  E+  P ++S DL+  S G   D   KEM  
Sbjct: 10  GMNDILPTQSPLWQKLETVLRETVSAYGYSEIRTPIVESTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y +   FR E   +    +  +F
Sbjct: 70  FDDRNGDSLTLRPEGTASTVRAGNEHGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFNQF 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            ++         +      +                 + LG  +         I      
Sbjct: 129 GVEVYGIGSADVDAEVLMLSHRLWEKLGITEHVTLELNTLGDPAERAAYRDALIAYLEQF 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKL 267
           +  +  ++           +D   P       D   L   + E+  A ++   ++ +   
Sbjct: 189 KEQLDEESQRRMYTNPLRVLDTKNPDVQALLTDAPELMEYLGEETRAHFSHLCELLDAVG 248

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              +   + V         +F      SL    T       D  V+            A 
Sbjct: 249 IKYVINPRLVRGLDYYNRTVFE-WVTSSLGAQGTVLAGGRYDGLVEQLGGKNTPAVGFAM 307

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMG 385
            +E        +      P  + +      D    +   KI   L        V     G
Sbjct: 308 GLERIVLMLETLELTKDIPATVDVYVTAMGDASKIE-AIKIAQSLRSELPHLRVMSHCGG 366

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHRF 442
                Q   AD  G  + +++G   +++++V +K+ R    +E ++ + +  Y +   
Sbjct: 367 GNFKKQMKRADKSGAQVALVIGEDELANNQVAVKYLREKKEQELVARDALATYIAELI 424


>gi|294011681|ref|YP_003545141.1| prolyl-tRNA synthetase [Sphingobium japonicum UT26S]
 gi|292675011|dbj|BAI96529.1| prolyl-tRNA synthetase [Sphingobium japonicum UT26S]
          Length = 508

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 125/410 (30%), Gaps = 86/410 (20%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G     P G    + +  ++ +    TG      P       +  E+   D + KEM  +
Sbjct: 34  GCMVIRPWGYGIWERMQKLLDDRIKATGHENCYFPLFIPLSYFEKEAEHVDGFAKEMAVV 93

Query: 97  ADRN----------------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
                               ++ ++  PT E V+   F   ++S+R+LP    Q     R
Sbjct: 94  THHRLIQKDGRLVPDPDAKLEEPLVVRPTSETVIGAAFSRWVQSWRDLPVLINQWANVVR 153

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E+R R                                  +LR    L  +     A   
Sbjct: 154 WEMRTR---------------------------------MFLRTAEFLWQEGHTAHASVE 180

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
               +      V     E  V       + P                  E++    A   
Sbjct: 181 EAMEETLKMLEVYRGFAEECVALPVIAGEKPEN----------------ERFPGAVA--- 221

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                       E      + ++ G   + GT +S   +  F+ A+G+    Q  S+G+ 
Sbjct: 222 --------TYSIEAMMQDGKALQAGTSHFLGTTFSSAQNIKFQNAEGQQELAQTTSWGM- 272

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGC 377
           + R++  +I    D  G+  P  +AP+++ ++ +      D    D C  + A L++   
Sbjct: 273 STRMIGGLIMVHGDDDGLRVPPRIAPYQVVVVPMLRDTDEDAAILDYCGDLVAELNRQDV 332

Query: 378 -----DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                    D    +  ++       G P+ + VG + V+   V +  R 
Sbjct: 333 FREPVRALLDRRPAKAANKRWGWVKKGAPIVIEVGGRDVAGGNVSVIRRD 382


>gi|229175609|ref|ZP_04303118.1| Glycyl-tRNA synthetase [Bacillus cereus MM3]
 gi|228607867|gb|EEK65180.1| Glycyl-tRNA synthetase [Bacillus cereus MM3]
          Length = 458

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 51/439 (11%), Positives = 131/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 31  WDYGPLGIELKNNVKKAWWKKFIQESPYNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 91  KCKARHRADKLIEDALDAKGIEMVVDGLTFDQMADLMKEHEVKCPDCGSQEFTEIRQFNL 150

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E+  +
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMTEESMRLRDHGEEELS 268

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     +      E   V++R       F              +      + +  
Sbjct: 269 HYSNATTDIEFRFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 323

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 324 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 380

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 381 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 438

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 439 EQVRMPISELKGFLEKKIQ 457


>gi|282852108|ref|ZP_06261466.1| histidine--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|282556868|gb|EFB62472.1| histidine--tRNA ligase [Lactobacillus gasseri 224-1]
          Length = 428

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 70/424 (16%), Positives = 136/424 (32%), Gaps = 20/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    + + V  I R    R    E+  P+ ++ +++  S     D   KEM  
Sbjct: 8   GTVDILPAESGSWEKVETIARNFFKRANYREIRTPSFENYEVFSRSSGESSDVVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +   +  +     ++  PF  Y I   FR E        R R
Sbjct: 68  FNDKGGRHITLRPEGTAGVVRAYVENKLYGPDVVKPFNVYYIDNTFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSF-DLTPEGSKHSYNKMFV--------SYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF   +P     +              +Y    + LG   +        +  
Sbjct: 125 EFHQIGVESFGSNSPLADVETIMMGHDLLAELGVKNYELHINTLGNAQVRKDYHDALVNY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               +  +  D+           +D     +     D   +   +++ +     T     
Sbjct: 185 FTPLKDQLSEDSQRRLSMNPLRILDSKAEEDKQFLPDAPRIVDYLDEDSKKNFETITDML 244

Query: 265 EKL-FDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           E+L  + + ++  V       G IF F     +L  SAT     G+ +++     G    
Sbjct: 245 EQLGINYVLDDDLVRGLDYYTGVIFEFMVEDKNLWESATTILGGGRYNHLVEEFDGPETP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E            ++   +     I    +       +I   L K      +D
Sbjct: 305 AVGFGIGEERLMLVLKEQNPALFEDEGIDFFITNIGEGTEMKAVEIARSLRKQDFKAQYD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV--INYASH 440
              +++  QF  AD +     + +G+K + +  + IK    G   D+SLE++  +     
Sbjct: 365 VDQKKLKQQFRKADRVHAKFVITLGAKELENGVLNIKRLADGKTLDLSLEDLNDMKSVME 424

Query: 441 RFSN 444
           +  +
Sbjct: 425 KIED 428


>gi|156089629|ref|XP_001612221.1| tRNA synthetase class II core domain containing protein [Babesia
           bovis]
 gi|154799475|gb|EDO08653.1| tRNA synthetase class II core domain containing protein [Babesia
           bovis]
          Length = 439

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 98/377 (25%), Positives = 148/377 (39%), Gaps = 74/377 (19%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           G++   S GI + LP+G++ ++ +  +I  E +R GA E+ +P L S+D   E  R + +
Sbjct: 52  GILTHMSPGISTVLPIGKRIVNRIERVIHVEMSRIGAKEVELPMLLSSDTINE--RRNEF 109

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRS--HIKSYRNLPFTFYQIQLKFRDELRPRF 147
           G+E+  L DRN K     PT EE++  +        S RNLP   YQI  KFRDE RP  
Sbjct: 110 GRELFSLTDRNGKHYDLCPTCEELICRMLDKALSPLSKRNLPIYLYQIGRKFRDEARPCN 169

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
             MR REF+MKDAYSF    + +   YNK   +Y RIF  L L       ++  I GD  
Sbjct: 170 SNMRCREFIMKDAYSFHSDKDSAAMDYNKFKQAYERIFTLLELSF-----DTVTI-GDTE 223

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           HEF  +                           +I  +  + +  T       +      
Sbjct: 224 HEFRAMLPN-------------------KKTLMEIAHIFQLGDAITTEAGLKYE------ 258

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E +                          +  + G   +           R++ A
Sbjct: 259 ----GEGRMKHPV---------------------YLNSYGIGIH-----------RLLQA 282

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                 D +GI  P  +AP+ +++I    + +        IY  LSK G D F D     
Sbjct: 283 AASQHADSEGIRLPQIIAPYDVAVIPCDENSEQASA---DIYTLLSKRGIDTFLDTRKAP 339

Query: 388 IGSQFAVADLLGFPLQV 404
           I  + +    +G P  V
Sbjct: 340 INQRVSDMMNIGIPHIV 356


>gi|229007232|ref|ZP_04164833.1| Glycyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228753986|gb|EEM03423.1| Glycyl-tRNA synthetase [Bacillus mycoides Rock1-4]
          Length = 455

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 53/439 (12%), Positives = 129/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   WV SG   ++   M+   
Sbjct: 28  WDYGPLGIELKNNVKKAWWKKFIQESPYNVGLDAAILMNPKTWVASGHVGNFNDPMIDCK 87

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 88  KCKARHRADKLIEDALDAKGIEMIVDGLTFDQMAGLMKEHEVKCPDCGSEDFTEIRQFNL 147

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 148 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 207

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F      ++ +       ++ + L    E   +
Sbjct: 208 FTFRTREFEQMELEFFCKPGEDLEWFTFWRNTCKNWLL--SLGMHEESMRLRDHGEDELS 265

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     K      E   V++R       F              +      + +  
Sbjct: 266 HYSNATTDIEFKFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 320

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 321 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 377

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 378 AGEVFAEL-AKDFVVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 435

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 436 EQVRMPISELKGFLEKKIQ 454


>gi|206969645|ref|ZP_03230599.1| glycyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|218231344|ref|YP_002369706.1| glycyl-tRNA synthetase [Bacillus cereus B4264]
 gi|228955177|ref|ZP_04117187.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229072398|ref|ZP_04205601.1| Glycyl-tRNA synthetase [Bacillus cereus F65185]
 gi|229082160|ref|ZP_04214625.1| Glycyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|229147466|ref|ZP_04275814.1| Glycyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|229153102|ref|ZP_04281282.1| Glycyl-tRNA synthetase [Bacillus cereus m1550]
 gi|229181212|ref|ZP_04308543.1| Glycyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|296505357|ref|YP_003667057.1| hypothetical protein BMB171_C4529 [Bacillus thuringiensis BMB171]
 gi|206735333|gb|EDZ52501.1| glycyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|218159301|gb|ACK59293.1| glycine--tRNA ligase [Bacillus cereus B4264]
 gi|228602266|gb|EEK59756.1| Glycyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|228630368|gb|EEK87017.1| Glycyl-tRNA synthetase [Bacillus cereus m1550]
 gi|228636011|gb|EEK92493.1| Glycyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|228701152|gb|EEL53673.1| Glycyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|228710721|gb|EEL62693.1| Glycyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228804518|gb|EEM51127.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|296326409|gb|ADH09337.1| hypothetical protein BMB171_C4529 [Bacillus thuringiensis BMB171]
          Length = 458

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/439 (11%), Positives = 131/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 31  WDYGPLGIELKNNVKKAWWKKFIQESPHNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 91  KCKARHRADKLIEDALDAKGIEMVVDGLTFDQMADLMKEHEVKCPDCGSEEFTEIRQFNL 150

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E+  +
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMSEESMRLRDHGEEELS 268

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     K      E   V++R       F              +      + +  
Sbjct: 269 HYSNATTDIEFKFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 323

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 324 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 380

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 381 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 438

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 439 EQVRMPISELKGFLEKKIQ 457


>gi|240276126|gb|EER39638.1| prolyl-tRNA synthetase [Ajellomyces capsulatus H143]
 gi|325090008|gb|EGC43318.1| prolyl-tRNA synthetase [Ajellomyces capsulatus H88]
          Length = 555

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 1/186 (0%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
            LPLG +  + +  ++ +     GA ++S+ ++ S  LW +SGR      E  +  DR  
Sbjct: 1   MLPLGLRVQEKLERLVDKHMRTLGASKLSLSSISSQALWEKSGRLKK-DSEFFKFQDRKK 59

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
              +  PTHEE +T +    + SY++LP   YQI  K+RDE RPR G++R REF+MKD Y
Sbjct: 60  ARFLLAPTHEEEITSLVAGVMNSYKDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLY 119

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +FD   E +  +YN +  +Y+R+F  L +  I   A+SG +GG LSHEF +    GE  +
Sbjct: 120 TFDYNAEMAIKTYNAVKDTYVRLFDELRIPYIIATADSGNMGGSLSHEFHLPNPKGEDTI 179

Query: 222 FCSKDF 227
                 
Sbjct: 180 ISCSSC 185



 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/198 (27%), Positives = 98/198 (49%), Gaps = 24/198 (12%)

Query: 257 AATSDVHNEKLFDSLPENKRVS---ARGIEVGHIFYFGTKYSLPMSATF----------- 302
            A  D  +    D        +      IE+ H F+ GT+YS  ++A+            
Sbjct: 351 GAKLDCISAAAGDQCSRCGEQAVQTHTAIELAHTFHLGTRYSKVLNASVAVPSTLLSNDS 410

Query: 303 --KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                      +QMG +GIG  R+++A+ +S  + KG+ WP ++APF+  +I     D+ 
Sbjct: 411 KANDNSSVSVPLQMGCHGIGVSRMISAIADSLANSKGLNWPRAIAPFEAMIIP----DKG 466

Query: 361 CRDACEKIYARLSKVGCDV---FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  EK+Y  +S++  D      DD  + +  +   ADL+G+P+ ++VG  +  +SK+E
Sbjct: 467 LEEEAEKVYDAISRINIDAVDAIIDDRDKNLAWKLRDADLIGYPVIIVVGKSWRMESKLE 526

Query: 418 IK-HRLTGIREDMSLEEV 434
           ++ HRL  +RE +SL ++
Sbjct: 527 VQCHRLNNLRETVSLPDL 544


>gi|228923648|ref|ZP_04086927.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228961167|ref|ZP_04122789.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229130174|ref|ZP_04259134.1| Glycyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|229193180|ref|ZP_04320132.1| Glycyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228590300|gb|EEK48167.1| Glycyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228653288|gb|EEL09166.1| Glycyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|228798514|gb|EEM45505.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228836009|gb|EEM81371.1| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 487

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/439 (11%), Positives = 131/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 60  WDYGPLGIELKNNVKKAWWKKFIQESPHNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 119

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 120 KCKARHRADKLIEDALDAKGIEMVVDGLTFDQMADLMKEHEVKCPDCGSEEFTEIRQFNL 179

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 180 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 239

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E+  +
Sbjct: 240 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMSEESMRLRDHGEEELS 297

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     K      E   V++R       F              +      + +  
Sbjct: 298 HYSNATTDIEFKFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 352

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 353 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 409

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 410 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 467

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 468 EQVRMPISELKGFLEKKIQ 486


>gi|317484491|ref|ZP_07943401.1| histidyl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
 gi|316924267|gb|EFV45443.1| histidyl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
          Length = 416

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 59/404 (14%), Positives = 116/404 (28%), Gaps = 28/404 (6%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKEMLRLADRNDKAMIYG 107
           + A+ RE  +R G  E+  P L+  +L+      E+   D   KEM    DR  +++   
Sbjct: 25  MEAVARETFSRYGFTELRTPILERTELFCRGIGTET---DVVQKEMYTFPDRKGRSLTLR 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +    +S  +     + I   FR E   +    R R+F   +      + 
Sbjct: 82  PEATAGVMRAYIESGRS-GDAVTKLFTIGPMFRYERPQKG---RMRQFHQINCECLGPSE 137

Query: 168 EGSK-HSYNKMFVSYLRIFHRL---------GLKSIPMRAESGPIGGDLSHEFIVLADTG 217
             +              +  +               P   E+         E  +  D  
Sbjct: 138 PYADAELVTMAMRFLEALGLKDLSLQLNSLGCPTCRPAYRETLRKWLSELDESALCEDCR 197

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDI-ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              V      +D  +PS      +    L+       A +     + + +    +  ++ 
Sbjct: 198 RRMVTNPLRVLDCKVPSCREHTAETPKILDHNCPDCAAHFETVRRLLDAEKVPYVINHRL 257

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V          F      S  + A    A G  +   +   G G                
Sbjct: 258 VRGLDYYTRTTFEI---VSDQIGAQGTVAGGGRYDGLVEQLG-GPNVSGLGFACGMERLA 313

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            ++        +     +   D V RDA   +   L   G           I S    A 
Sbjct: 314 LLLPQPEAGADRPDFFTVVLTD-VARDAAYALTQALRDAGFRGEMGFSSRSIKSAMRQAG 372

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             G    +++G   ++   V +K+  +G +  ++  +V+     
Sbjct: 373 KSGARFCLLIGEDELAAQTVMLKNMDSGEQSSVAFADVVARLQK 416


>gi|229014104|ref|ZP_04171225.1| Glycyl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|229169638|ref|ZP_04297340.1| Glycyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228613834|gb|EEK70957.1| Glycyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228747058|gb|EEL96940.1| Glycyl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 458

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 51/439 (11%), Positives = 130/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 31  WDYGPLGIELKNNVKKAWWKKFIQESPHNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 91  KCKARHRADKLIEDALDAKGIEMVVDGLTFDQMADLMKEHEVKCPDCGSQEFTEIRQFNL 150

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E   +
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMTEESMRLRDHGEDELS 268

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     +      E   V++R       F              +      + +  
Sbjct: 269 HYSNATTDIEFRFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 323

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 324 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 380

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 381 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 438

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 439 EQVRMPISELKGFLEKKIQ 457


>gi|282892398|ref|ZP_06300748.1| hypothetical protein pah_c253o017 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497800|gb|EFB40161.1| hypothetical protein pah_c253o017 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 481

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 68/420 (16%), Positives = 126/420 (30%), Gaps = 36/420 (8%)

Query: 37  KGIYSWLPLGQ-------KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYD 87
            G++  LP G             V ++IR+     G  E+  P  +  +L+        D
Sbjct: 7   PGVFDILPRGTEETWQLSHLWTYVESVIRKLAAEYGFEEIRTPIFERTELFKRGVGEATD 66

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
              KEM    DR  ++M   P     +   F  H     +     + I   FR E     
Sbjct: 67  VVSKEMYTFEDRGGRSMSLRPEGTAPVVRSFVEHNLHTESRTHKLFYIGPMFRYERSQAG 126

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP-------MRAESG 200
              +  +F +         PE      + ++  Y R+        I          A   
Sbjct: 127 RYRQHHQFGV--EVIGCDAPEQDAEVIDLLYTLYRRLGLSNLQVYINSIGTPEARIAYKE 184

Query: 201 PIGGDLSHEFI-------VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
            +   L   F           +T   ++  SK+  D  I +      D +   S     T
Sbjct: 185 ALKNYLKEHFDGLSEDSKTRFETNPLRILDSKNPGDQKIVASAPSILDFLDDASRTHFET 244

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHY 311
                T       +  +L        + +        G + S+     + G         
Sbjct: 245 VKQLLTQLNIPFVVNSNLVRGLDYYNKTVFEIVSGQLGAQNSVGGGGRYDGLIKTIGGPD 304

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           +    +G G  R++  +++        I   +     +  I +          C  +   
Sbjct: 305 LPALGFGTGIERIIQTMLKQ------EIALPNPYQPALFFIPLGK---EAEKTCFTLAHD 355

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G  V  D   ++IG    +A+ +G     +VG + +   +V++K   TG      L
Sbjct: 356 LRQKGISVQMDFSRKKIGKAMQLANQVGARFVAVVGDQELQKREVQLKEMATGETYTAPL 415


>gi|254444041|ref|ZP_05057517.1| glycyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
 gi|198258349|gb|EDY82657.1| glycyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
          Length = 502

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 68/484 (14%), Positives = 139/484 (28%), Gaps = 72/484 (14%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G I Q S       G + + PLG +   N+     ++    R   + +    +    +
Sbjct: 21  RRGFIFQSSEIYGGYNGFFDFGPLGSEIKKNIKDAWWKDMVHRREDVVGLDSSIIMHPKI 80

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY-------------- 125
           WV SG    +   M+   +   +          V          S               
Sbjct: 81  WVASGHVGGFSDPMVDCKESKMRYRADQLFFAPVKVAGETIGYVSVLEDGAMQAEAEQKA 140

Query: 126 -------------RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY----------- 161
                          +    Y        EL P               +           
Sbjct: 141 DKLKRKAAVQGELEPIVLKQYVDADPSEYELIPSPATGEPGSLTAPRDFNLMFETKVGAL 200

Query: 162 -SFDLTPEGSKHSYNKMFVSYLRIFHR-----LGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                T      +   +F +Y  +            +   +A    I            +
Sbjct: 201 SDNSATAYLRPETAQGIFANYKNVVDTGRVKIPFGIAQIGKAFRNEITPRNFIFRSREFE 260

Query: 216 TGETQVFCSK--DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD---S 270
             E + F S   D+ +         ++ +IS+    E            + +   D    
Sbjct: 261 QMEIEYFISPDVDWSEAHQDWIKYCWNWLISIGLPEEMLGKDVHEKLAHYAKACTDITFK 320

Query: 271 LPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            P  ++    GI     F       +S      F  A  K     +    +G  R+  A+
Sbjct: 321 FPFGEQELW-GIAARGDFDLSQHQEHSGKSMEIFDEASKKKFVPHVIEPSLGVDRLFLAI 379

Query: 329 IESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           + +++            + +   +AP+K++++ +  +     +  EK+Y +L +   +VF
Sbjct: 380 LGAAYTEDEVGGEKRSLMKFHPRIAPYKVAVLPLVKNKPELVEIAEKLYKKLQRR-YNVF 438

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYA 438
           WD  G  IG ++   D +G P  V V    +        ++ R T  +  ++  E++ + 
Sbjct: 439 WDQSGA-IGRRYRRQDEIGTPWCVTVDFDTIEKEGQTFTLRDRDTTEQRRVNEAELLAFL 497

Query: 439 SHRF 442
             + 
Sbjct: 498 DEQL 501


>gi|159901209|ref|YP_001547456.1| glycyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894248|gb|ABX07328.1| glycyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 459

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 146/478 (30%), Gaps = 97/478 (20%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G I   S      +G Y + PLG +  +N+ A         R     +    L    +
Sbjct: 15  RRGFIFPGSDIYGGLQGTYDYGPLGIELKNNLKAAWWRAMVYERDDVEGLDASILTHRLV 74

Query: 80  WVESGRYDSYGKEM---LRLADRNDKA--------------------------------- 103
              SG   ++   M        R                                     
Sbjct: 75  LRHSGHEATFTDPMVDCRNCKSRWRADQLKDNKCEKCGSTDLTEPRPFNLMFKTAVGPIA 134

Query: 104 ------MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
                  +   T + + T+       + R LPF   QI   FR+E+ PR  + R REF  
Sbjct: 135 EEGSFAYLRPETAQGIFTNFKNVVDATSRRLPFGIAQIGKAFRNEITPRNFIFRVREFEQ 194

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIV 212
            +   F   P      +++   + L+ +   GL S  ++A     +        + + + 
Sbjct: 195 MELEFFVQ-PGTDDEWHSQWVEARLQWWRDQGLLSENLQAYHQAGDELAHYAKATVDILY 253

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
               G  ++    +  DF + S      D+     +     +   A   + + +    L 
Sbjct: 254 QFPHGLEELEGIANRTDFDLGSHTRGQADLGLSAKVDPNEDS--TAKLTIPHPETQKPLV 311

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                 + G++ G +      ++                                 +E+ 
Sbjct: 312 PFVIEPSAGVDRGVLAILTEAFTKE------------------------------TLENG 341

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQ 391
            +   +     +AP K++++ +  +     +  + I + L   G   +F++D G  IG  
Sbjct: 342 SERIVLKLKPHLAPIKVAVLPLARNKPEIVEKAKAIKSLLMATGIGRIFYEDTG-NIGKG 400

Query: 392 FAVADLLGFPLQVIVGSKFVSDS-------KVEIKHRLTGIREDMSLEEVINYASHRF 442
           +   D +G P  V V    +           V ++ R T  +  + + E+ +Y   R 
Sbjct: 401 YRRHDEVGTPFCVTVDFDTLGRGDDASLLDTVTVRDRDTMSQVRIHINELASYIRERL 458


>gi|300710220|ref|YP_003736034.1| histidyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
 gi|299123903|gb|ADJ14242.1| histidyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
          Length = 432

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 123/422 (29%), Gaps = 34/422 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P   ++   V   + E   R G  E+  P L+  +++  +SG  +    E+   
Sbjct: 7   GFRDFYPEEMRSRRAVIDGLEEAARRYGFREIGTPALERTEMYVEKSG--EEITDELYHF 64

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +  +  +  +   + P  ++  +  +R E   +    R REF 
Sbjct: 65  TDQGGREVAMTPELTPTVARMVVAKQQ-ELSKPIKWFSTRPFWRYEQVQQG---RFREFY 120

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +   F  +   +           L      G      R     I G L        DT
Sbjct: 121 QTNVDVFGSSEPEADAEVLAYCADALTGLGLTGEDFEF-RVSHRDILGGLLDAVGDEVDT 179

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-----TAPYAATSDVHNEKLFDSL 271
            E  +                   D     S  EQ+     T       +        S 
Sbjct: 180 RE-AIRAVDKREKIEDGEYYGLLTDAGLTGSQAEQFDSLLSTDDLGELVEFAGTDRVQSA 238

Query: 272 PEN-------------------KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            EN                      +ARG++      F    S    +      G+   +
Sbjct: 239 VENLENVLAAAEDFGAREHCTISLETARGLDYYTGVVFECFDSAGEVSRSVFGGGRYDDL 298

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
             G  G     V  AV   +            A    +   + +  +  R    +I   L
Sbjct: 299 IEGFGGQPTPAVGFAVGHETLSLLLERAEARSAGTFGTDYYVLSVGET-RPVAARIAREL 357

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            + G  V  D      G+Q   AD +G    VIVG + +   +V +K   +G +    +E
Sbjct: 358 RERGHRVETDLADRSFGAQMNYADSIGAETVVIVGERDLESGEVTVKDMYSGDQTTTPVE 417

Query: 433 EV 434
             
Sbjct: 418 SF 419


>gi|18976636|ref|NP_577993.1| histidyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
 gi|32130125|sp|Q8U431|SYH_PYRFU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|18892205|gb|AAL80388.1| histidyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
          Length = 432

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 136/443 (30%), Gaps = 40/443 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           MI +  KG   +LP        V   IRE     G  E+  PT++   L+   SG  +  
Sbjct: 1   MIERV-KGTRDFLPEEMVKRRWVFERIRERFETYGFKEVLTPTMEYTKLFELRSG--EEV 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            K++    D+  + +   P     +  ++ +  ++       +Y   +   +E +     
Sbjct: 58  VKQLYAFKDKGGRDVSLRPDMTSSVARLYVNMFQTAPKPIKWYYIANMFRYEEPQSG--- 114

Query: 150 MRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            R REF              +          SYL    R    +I  R         L  
Sbjct: 115 -RYREFWQAGVELIGSDKVEADAEVIALFVESYLATGLREFTVNIGDRILLDEFAKMLG- 172

Query: 209 EFIVLADTGETQVFCSKDFM--DFPIPSENTDFDDIISLNSIVEQ--------------- 251
              V  D G  ++   KD +  +  I +      D   +  ++E                
Sbjct: 173 ---VKDDIGLMRIIDKKDKLPQEDFINALKEFGLDKNGIEKVLELINIKGKPDEVLPLAE 229

Query: 252 --WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA----TFKGA 305
             +T+  A         L D L   +      I++G    F    S+   A         
Sbjct: 230 ELFTSEVAKNEINRLYALIDLLEAYEVKDWIRIDLGIARGFDYYTSIVFEAIAPNDLGIG 289

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI----SLINIKAHDQVC 361
                        +   +   A   +    + I   ++            + +    +  
Sbjct: 290 SIGGGGRYDNLIEVFGGKPTPATGFAIGIERLIPILEAKGLIPEVQIAPDVYVVPIGERM 349

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +    +I   L K G     + MG ++      A+ +G    +IVG K +    V ++  
Sbjct: 350 KKVAIRIATSLRKSGIKTEIELMGRKLKKAMDYANKVGVKKTIIVGEKDLERGVVTVRDM 409

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            +G + ++ +++++ +  +    
Sbjct: 410 ESGEQNEVKIDDIVEFMKNALKT 432


>gi|257439266|ref|ZP_05615021.1| glycine--tRNA ligase [Faecalibacterium prausnitzii A2-165]
 gi|257198308|gb|EEU96592.1| glycine--tRNA ligase [Faecalibacterium prausnitzii A2-165]
          Length = 275

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 89/259 (34%), Gaps = 29/259 (11%)

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           +  EF     T        KD+ +  + S     + +   +    +      AT+D+   
Sbjct: 24  MECEFFCKPGTDLDWFAYWKDYCENWLLSLGIKKEHLRLRDHEPAELAFYSRATTDIEYA 83

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
             F    E   ++ R           +  SL     F     + +   +    +G  RV 
Sbjct: 84  FPFTDWGELWGIADRTNYDLTRHQEASGKSLEY---FDSETNEHYIPYVIEPSLGCDRVA 140

Query: 326 AAVIESSHD-------------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            A +  ++D                +    ++AP+K +++ +        D   +I   L
Sbjct: 141 LAFLCEAYDEEHLVDAKGKEDVRTVLHLHPALAPYKCAVLPLSKK---LGDKAMEIRNEL 197

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV--------SDSKVEIKHRLTG 424
           SK    V +DD G  IG ++   D +G P  + V    V        +D+ V ++ R T 
Sbjct: 198 SKY-FMVDYDDTG-SIGKRYRREDEIGTPYCITVDFDTVGDEAKGIAADNCVTVRDRDTM 255

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+ +Y   +  
Sbjct: 256 EQVRMPISELKSYIESKIE 274


>gi|116629514|ref|YP_814686.1| histidyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|311110843|ref|ZP_07712240.1| histidine--tRNA ligase [Lactobacillus gasseri MV-22]
 gi|122273548|sp|Q043X4|SYH_LACGA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|116095096|gb|ABJ60248.1| histidyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|311065997|gb|EFQ46337.1| histidine--tRNA ligase [Lactobacillus gasseri MV-22]
          Length = 428

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 70/424 (16%), Positives = 136/424 (32%), Gaps = 20/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    + + V  I R    R    E+  P+ ++ +++  S     D   KEM  
Sbjct: 8   GTVDILPAESGSWEKVETIARNFFKRANYREIRTPSFENYEVFSRSSGESSDVVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +   +  +     ++  PF  Y I   FR E        R R
Sbjct: 68  FNDKGGRHIALRPEGTAGVVRAYVENKLYGPDVVKPFNVYYIDNTFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSF-DLTPEGSKHSYNKMFV--------SYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF   +P     +              +Y    + LG   +        +  
Sbjct: 125 EFHQIGVESFGSNSPLADVETIMMGHDLLAELGVKNYELHINTLGNAQVRKDYHDALVNY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               +  +  D+           +D     +     D   +   +++ +     T     
Sbjct: 185 FTPLKDQLSEDSQRRLSMNPLRILDSKAEEDKQFLPDAPRIVDYLDEDSKKNFETITDML 244

Query: 265 EKL-FDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           E+L  + + ++  V       G IF F     +L  SAT     G+ +++     G    
Sbjct: 245 EQLGINYVLDDDLVRGLDYYTGVIFEFMVEDKNLWESATTILGGGRYNHLVEEFDGPETP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E            ++   +     I    +       +I   L K      +D
Sbjct: 305 AVGFGIGEERLMLVLKEQNPALFEDEGIDFFITNIGEGTEMKAVEIARSLRKQDFKAQYD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV--INYASH 440
              +++  QF  AD +     + +G+K + +  + IK    G   D+SLE++  +     
Sbjct: 365 VDQKKLKQQFRKADRVHAKFVITLGAKELENGVLNIKRLADGKTLDLSLEDLNDMKSVME 424

Query: 441 RFSN 444
           +  +
Sbjct: 425 KIED 428


>gi|315604760|ref|ZP_07879823.1| glycyl-tRNA synthetase beta subunit [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313772|gb|EFU61826.1| glycyl-tRNA synthetase beta subunit [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 475

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 56/434 (12%), Positives = 133/434 (30%), Gaps = 39/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+           R   + +    +   ++WV SG   ++   ++   
Sbjct: 48  WDYGPLGVELKENIKRAWWNYMVRRRADVVGLDSSVILPREVWVASGHVKAFTDPLIECL 107

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFGVMRSREFL 156
           + + ++       E  + D       S            ++ +  E R   G++++    
Sbjct: 108 NCHKRSREDQLIEE--LADKKGVEESSLTLADVACPTCGVRGQWTEPRAFSGLLKTYLGP 165

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLSH 208
           + D          +       + + +    +         G            I      
Sbjct: 166 VDDEAGLHYLRPETAQGIFVNYANVMNAARKKPPFGIGQIGKSFRNEITPGNFIFRTREF 225

Query: 209 -----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                EF     T E       D+          D +++       E+ +     T D+ 
Sbjct: 226 EQMELEFFCEPGTDEEWHQYWIDYRKAWYVDLGIDPENLREYEHPQEKLSHYSKRTVDLE 285

Query: 264 NEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               F      E + ++ R      +    ++ S      F  +  +     +     G 
Sbjct: 286 YRFGFQGGQWGELEGIANRTDYDLTVH---SEASGAKLDYFDPSTKERWTPYVIEPSAGL 342

Query: 322 MRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R + A +  ++                       +AP K +++ +    ++     +++
Sbjct: 343 TRSLMAFLIEAYHEDEAPNAKGGVDKRVVLKLDPRLAPVKAAVLPLSRKPELTGP-AQEL 401

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L  +  ++ +DD G  +G ++   D +G P  +      V D  V I+ R +  +  
Sbjct: 402 ADQLRGLW-NIDYDDAGA-VGRRYRRQDEIGTPYCITYDFDSVEDRAVTIRERDSMQQVR 459

Query: 429 MSLEEVINYASHRF 442
           + LE V +Y   R 
Sbjct: 460 IPLEGVKSYLVERL 473


>gi|71894465|ref|YP_278573.1| glycyl-tRNA synthetase [Mycoplasma synoviae 53]
 gi|123747937|sp|Q4A5V9|SYG_MYCS5 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|71851253|gb|AAZ43862.1| glycyl-tRNA synthetase [Mycoplasma synoviae 53]
          Length = 451

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 55/453 (12%), Positives = 134/453 (29%), Gaps = 42/453 (9%)

Query: 19  EIASHKLMLRTGMIHQHSKGIY-------SWLPLGQKALDNVNAIIRE--EQNRTGAIEM 69
           E+ +H  +   G + Q    IY        + PLG    DN+    ++    ++     +
Sbjct: 8   ELINH--LKNAGFVFQ-GSEIYGGVANTWDYGPLGVLLKDNILNYWKKFFVFSQNNIYML 64

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV----MTDIFRSHIKSY 125
               L ++ +W  SG   ++   ++     N +        E      +  +    ++ +
Sbjct: 65  DSKILLNSKVWEASGHVGNFNDPLIENKINNKRYRADKVIEELFPNENVAKMTHEQMQEF 124

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                T Y        E++    +  + + ++ D          +       F +  R  
Sbjct: 125 LQKNVTSYDNSKCAWSEIKKFNLMFETFQGVVDDKKKAIYLRPETAQGIFINFKNIQRAM 184

Query: 186 H--------------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                          R  +        +          F                  DF 
Sbjct: 185 RAKLPFGVAQVGKSFRNEVTPGNFIFRTREFEQMELEFFFDEETPNSYFDELVNKSYDFM 244

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           +       +++       E+      AT D+          E   ++ RG          
Sbjct: 245 LK-LGLSKNNLKVRKHDQEELAHYSKATVDL-EYNFPFGWGELMGIAHRGNFDLSTH--- 299

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP------DSVA 345
           +K+S            K     +    +G  R++ A++  ++  + +             
Sbjct: 300 SKFSNEKLEYLDPNTNKKLIPSVIEPSVGLDRLMLAILCEAYSEEKVSESDTRLVLKLDK 359

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
                 + I    +       +IY+ L      V +D+    IG ++   D +G    + 
Sbjct: 360 KLSPYKVAILPLIKKFNPKANEIYSYLIDKNISVTFDES-ASIGKRYRRQDAIGTYYCLT 418

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V  + + D+ V ++ R +  +E ++ ++++ + 
Sbjct: 419 VDEQSLEDNTVTLRDRDSMQQERINFKDILKFL 451


>gi|167949162|ref|ZP_02536236.1| Prolyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 121

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 1/112 (0%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRD 363
             GK   + MG YGIG  RVVAA IE  HD  GI WP S+APF++++  +K       R+
Sbjct: 2   RTGKAVVMTMGCYGIGVSRVVAATIEQHHDEHGISWPASIAPFQVAICPMKLHKSARVRE 61

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             E++Y  L  +G +V  DD   + G  FA  +L+G P +V++G + +   +
Sbjct: 62  PVEQLYTELQALGIEVLLDDRDVRPGFMFADMELIGIPHRVVIGERSLDQGQ 113


>gi|49478811|ref|YP_038935.1| glycyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|59798535|sp|Q6HBZ1|SYG_BACHK RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|49330367|gb|AAT61013.1| glycine--tRNA ligase (glycyl-tRNA synthetase, class II) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 458

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 54/439 (12%), Positives = 134/439 (30%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 31  WDYGPLGIELKNNVKKAWWKKFIQESPYNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 90

Query: 98  DRN---------DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
                       + A+        V    F       +           +   E+R    
Sbjct: 91  KCKARHRADKLIEDALDAKGIEMVVDGLTFDQMADLMKEHEVKCPDCSSEEFTEIRQFNL 150

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIP 194
           + ++ + + + + +       +       F +  R                 R  +    
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E+  +
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMTEESMRLRDHGEEELS 268

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     K      E   V++R       F              +      + +  
Sbjct: 269 HYSNATTDIEFKFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 323

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 324 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 380

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 381 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 438

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 439 EQVRMPISELKGFLEKKIQ 457


>gi|229076294|ref|ZP_04209259.1| Glycyl-tRNA synthetase [Bacillus cereus Rock4-18]
 gi|229099375|ref|ZP_04230305.1| Glycyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|229105535|ref|ZP_04236169.1| Glycyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|229118387|ref|ZP_04247741.1| Glycyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228664957|gb|EEL20445.1| Glycyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228677805|gb|EEL32048.1| Glycyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228683999|gb|EEL37947.1| Glycyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|228706729|gb|EEL58937.1| Glycyl-tRNA synthetase [Bacillus cereus Rock4-18]
          Length = 495

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/439 (11%), Positives = 131/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 68  WDYGPLGIELKNNVKKAWWKKFIQESPHNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 127

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 128 KCKARHRADKLIEDALDAKGIEMVVDGLTFDQMADLMKEHEVKCPDCGSEEFTEIRQFNL 187

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 188 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 247

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E+  +
Sbjct: 248 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMHEESMRLRDHGEEELS 305

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     K      E   V++R       F              +      + +  
Sbjct: 306 HYSNATTDIEFKFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 360

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 361 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 417

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 418 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 475

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 476 EQVRMPISELKGFLEKKIQ 494


>gi|153005174|ref|YP_001379499.1| histidyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
 gi|152028747|gb|ABS26515.1| histidyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
          Length = 415

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 64/413 (15%), Positives = 133/413 (32%), Gaps = 18/413 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP        + A+ RE     G  E+  P ++ A L+        D   KEM  
Sbjct: 10  GMNDLLPGQASRWQEMEAVAREVFALYGYREVRTPVVEPAQLFARGVGEATDIVKKEMYV 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+ ++ +   P         F     ++   P  ++ +   FR E   +    R R+F
Sbjct: 70  FEDKGEELLALRPEGTAGTVRAFI-EHGAFVEGPQKWFYVGPMFRRERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
                 +F +           +   YL          +    +    P       +F+  
Sbjct: 126 HQIGCEAFGIAEPYLDAEQIALLDDYLARLGVRAELKLNSVGDRACRPAYLQDLRDFLA- 184

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF---DS 270
           +  GE    C++     P+   +   +    + +   +           H + +    D+
Sbjct: 185 SRKGELCADCNERMERNPLRVLDCKVESCQPVLAQAPRLLERLCPECASHFDAVKGGLDA 244

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSA----TFKGADGKDHYVQMGSYGIGAMRVVA 326
           L     V  R +  G  +Y  T Y     A    +     G+   +     G     +  
Sbjct: 245 LGVRYTVDTR-LVRGLDYYVRTAYEFTSDALGSQSAVAGGGRYDGLVETLGGPPTPGIGF 303

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A+ +            +    +  +  + A  +  R+A  +  A L + G     D  G 
Sbjct: 304 ALGQERLAMILEKAGRAAPERRPVVFFVSADAEGAREALRR-AAELRRAGIACELDARGG 362

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++ +QF  A+ +G    +++G   V   + ++K   T     ++L +++    
Sbjct: 363 KLKAQFKQAERVGARYALVLGGNEVQTGQAKLKDLQTREETPIALADLVARVR 415


>gi|228999674|ref|ZP_04159250.1| Glycyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|228760036|gb|EEM09006.1| Glycyl-tRNA synthetase [Bacillus mycoides Rock3-17]
          Length = 458

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 53/439 (12%), Positives = 129/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   WV SG   ++   M+   
Sbjct: 31  WDYGPLGIELKNNVKKAWWKKFIQESPYNVGLDAAILMNPKTWVASGHVGNFNDPMIDCK 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 91  KCKARHRADKLIEDALDAKGIEMIVDGLTFDQMAGLMKEHEVKCPDCGSEDFTEIRQFNL 150

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F      ++ +       ++ + L    E   +
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDLEWFTFWRNTCKNWLL--SLGMHEESMRLRDHGEDELS 268

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     K      E   V++R       F              +      + +  
Sbjct: 269 HYSNATTDIEFKFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 323

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 324 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 380

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 381 AGEVFAEL-AKDFVVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 438

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 439 EQVRMPISELKGFLEKKIQ 457


>gi|182438813|ref|YP_001826532.1| glycyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326779468|ref|ZP_08238733.1| glycyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
 gi|178467329|dbj|BAG21849.1| putative glycyl-tRNA synthetase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326659801|gb|EGE44647.1| glycyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
          Length = 460

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 60/433 (13%), Positives = 135/433 (31%), Gaps = 38/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+           R   + +    + + D+WV SG   ++   +    
Sbjct: 33  WDYGPLGVEMKENLKRQWWRYMVTAREDVVGLDSSVILAPDVWVASGHVATFSDPLTECT 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +        E       +  +    +L             E +   G++ +     
Sbjct: 93  SCHKR-YRADHLEEAYEEKHGKPPVNGLADL-NCPNCGNKGTFTEPKEFSGLLSTHLGPT 150

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESGPIG 203
           +D+ S       +       F   L+                 R  +        +    
Sbjct: 151 QDSGSVAYLRPETAQGIFTNFGQVLQTSRKKPPFGIAQMGKSFRNEITPGNFIFRTREFE 210

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                 F+   +  E Q +      ++         +++       E+ +     T+D+ 
Sbjct: 211 QMEMEFFVKPGEDEEWQQYWMDQRWNWYT-DLGMREENMRWFEHPKEKLSHYSKRTADIE 269

Query: 264 NEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               F      E + V+ R           ++ S      +     +     +     G 
Sbjct: 270 YRFRFGGSEWGELEGVANRTDYDLKAH---SEASGTDLQFYDQEANERWTPYVIEPAAGV 326

Query: 322 MRVVAAVIESSH------DGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIY 369
            R + A +  ++      + KG++   +V      L  +K      + +       + + 
Sbjct: 327 GRAMLAFLLDAYVEDEAPNAKGVMEKRTVMRLDHRLAPVKVAVLPLSRNPQLSPKAKGLA 386

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A L K   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R T  +E +
Sbjct: 387 ADLRKNW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRERDTMKQERV 444

Query: 430 SLEEVINYASHRF 442
           SL+++  Y   R 
Sbjct: 445 SLDQIQAYLGSRL 457


>gi|148238579|ref|YP_001223966.1| histidyl-tRNA synthetase [Synechococcus sp. WH 7803]
 gi|166228624|sp|A5GIA4|SYH_SYNPW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|147847118|emb|CAK22669.1| Histidyl-tRNA synthetase [Synechococcus sp. WH 7803]
          Length = 441

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 67/417 (16%), Positives = 120/417 (28%), Gaps = 27/417 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP   +    V A+ R+   R G  E+  P L+  +L+        D  GKEM  
Sbjct: 9   GMVDLLPEQTRRWQAVEAVARDHFRRAGVEEIRTPLLEVTELFARGIGEGTDVVGKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +++    P     +      H    +     +Y     FR E        R R+F
Sbjct: 69  FLDRGERSCTLRPEGTASVVRAAMQHGLLNQGAQKLWYA-GPMFRYERPQAG---RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL-- 213
                    ++   S      +    L      GL+       +         E +    
Sbjct: 125 HQIGVECLGVSSARSDVEAIALAWDLLAALGVQGLELEINSLGTPEDRQCYRAELVAWLE 184

Query: 214 -------ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                  AD+ +         +D    +      D  +L   +   +A   A       +
Sbjct: 185 ARRDQLDADSQQRLTTNPLRILDSKNKATQALLADAPTLLEALSPESAQRFAQVQALLHQ 244

Query: 267 LFDSLPENKRVSARGIEVGHIF------YFGTKYSLPMSATFKG--ADGKDHYVQMGSYG 318
           L      N R+       GH          G + ++     + G              + 
Sbjct: 245 LGIPFKLNTRLVRGLDYYGHTAFEITSDQLGAQATVCGGGRYDGLVEQLGGPATPAIGWA 304

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G  R++  +  ++                  +  +    +        +   L   G  
Sbjct: 305 LGMERLLLVLEAAAKADPAGAAAQLTMSAPPEVYVVNRG-EAAEAVALSLTRSLRLAGVA 363

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK--HRLTGIREDMSLEE 433
           V  D  G   G QF  AD  G P   ++G +  +   V +K   R  G +  + L +
Sbjct: 364 VELDGSGAAFGKQFKRADRSGAPWAAVIGDEEAASGVVCLKPLLREGGDQ-RLPLSD 419


>gi|229112357|ref|ZP_04241895.1| Glycyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228671005|gb|EEL26311.1| Glycyl-tRNA synthetase [Bacillus cereus Rock1-15]
          Length = 487

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/439 (11%), Positives = 131/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 60  WDYGPLGIELKNNVKKAWWKKFIQESPYNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 119

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 120 KCKARHRADKLIEDALDAKGIEMVVDGLTFDQMADLMKEHEVKCPDCGSEEFTEIRQFNL 179

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 180 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 239

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E+  +
Sbjct: 240 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMSEESMRLRDHGEEELS 297

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     K      E   V++R       F              +      + +  
Sbjct: 298 HYSNATTDIEFKFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 352

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 353 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 409

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 410 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 467

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 468 EQVRMPISELKGFLEQKIQ 486


>gi|146295715|ref|YP_001179486.1| histidyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|166227954|sp|A4XHB0|SYH_CALS8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|145409291|gb|ABP66295.1| histidyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 419

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 59/418 (14%), Positives = 122/418 (29%), Gaps = 23/418 (5%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEM 93
           P G K            V +  R+     G  E+  PT +  +L+        D   KEM
Sbjct: 6   PKGTKDVLPEESYIWQYVESKFRQICKLYGYQEVRFPTFEYTELFQRGVGETTDIVQKEM 65

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
               D+  +++   P     +  +F  H  + R +P   Y I   FR E           
Sbjct: 66  YTFLDKGGRSITLRPEGTASVARLFIEHGFASRPMPQRLYYIISAFRYENTQGGRYREFH 125

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP---MRAESGPIGGDLSHEF 210
           +F +++  S   +P       +  +  ++ +     + +I              +L   F
Sbjct: 126 QFGIENFGS--KSPVTDAEIISLSYNFFVSLGLDNIVVNINSIGCPVCRKDYVKNLKEYF 183

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           +   D       C +     P+   +   D+   +     +           H E L   
Sbjct: 184 LGYYDK--LCPTCKQRLDKNPMRILDCKEDNCKLIAQDAPKPIEYLCDECKTHFEALKGY 241

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD------GKDHYVQMGSYGIGAMRV 324
           L            +     + T+    +       +      G+   +     G     +
Sbjct: 242 LDAAGVCYKVDPYIVRGLDYYTRTVFEIVDVVLDKELAICGGGRYDNLIEQIGGSSTPGI 301

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             A+                   ++  + I     +      +I + L   G     +++
Sbjct: 302 GFAIGVERLIMLLSQKGLIPQKPQVPQVFIATLGDLATKKAFEIASTLRFEGISTVIEEL 361

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              + SQ   AD LG    VI+G   +     +++   T   E + +E +  +   + 
Sbjct: 362 SRSLKSQMKYADKLGCDFAVIIGDDELEKGVCKVREMKTSSEEVVRIEGLAQHIKSKI 419


>gi|291235359|ref|XP_002737612.1| PREDICTED: AGAP008929-PA-like, partial [Saccoglossus kowalevskii]
          Length = 314

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 3/146 (2%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD         L     H+ S G   + P G    + +   I+ E    G  E+ 
Sbjct: 37  EEAAKRDHRKIGRDQELY--FFHELSPGSCFFHPKGAHIYNTLINYIKSEYRTRGFQEVV 94

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + ++ LW  SG +  Y + M       +K     P +     +  +   +       
Sbjct: 95  SPNIYNSKLWETSGHWQHYAENMFSFESEKEK-FALKPMNCPGHWNTAKYACRDQVQRRP 153

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFL 156
           T Y    +   ++  +        F+
Sbjct: 154 TAYMWLERMIQQMVAQEIPSYQTLFV 179


>gi|229048607|ref|ZP_04194165.1| Glycyl-tRNA synthetase [Bacillus cereus AH676]
 gi|228722726|gb|EEL74113.1| Glycyl-tRNA synthetase [Bacillus cereus AH676]
          Length = 458

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/439 (11%), Positives = 131/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 31  WDYGPLGIELKNNVKKAWWKKFIQESPYNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 91  KCKARHRADKLIEDALDAKGIEMVVDGLTFDQMADLMKEHEVKCPDCGSEEFTEIRQFNL 150

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E+  +
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMSEESMRLRDHGEEELS 268

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     K      E   V++R       F              +      + +  
Sbjct: 269 HYSNATTDIEFKFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 323

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 324 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 380

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 381 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 438

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 439 EQVRMPISELKGFLEKKIQ 457


>gi|215741276|dbj|BAG97771.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 366

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 75/187 (40%), Gaps = 11/187 (5%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G     G  +S      F   + +  +V   S+ I + R V  +I + 
Sbjct: 97  EAMMGDRKALQAGTSHNLGQNFSRAFGTQFMDENSQIEHVWQTSWAI-STRFVGGIIMTH 155

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWDDMGEQ-I 388
            D  G++ P ++AP ++ ++ I           +A   +   L + G  V  DD   +  
Sbjct: 156 GDDAGLMLPPNIAPIQVVIVPIWKKGDEKSAVMEAVSSVQNTLKEAGIRVKVDDSELRTP 215

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-TGIRE-----DMSLEEVINYASHRF 442
           G +F   ++ G P+++ +G + V++  V I  R   G +       M    ++++   R 
Sbjct: 216 GWKFNFYEMKGVPIRLEIGPRDVTNKSVVISRRDIPGKQGKEFGVSMDPSILVDHIKGRL 275

Query: 443 SNNRPVL 449
              +  L
Sbjct: 276 VEIQASL 282


>gi|163942630|ref|YP_001647514.1| glycyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|229135744|ref|ZP_04264516.1| Glycyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|163864827|gb|ABY45886.1| glycyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|228647710|gb|EEL03773.1| Glycyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
          Length = 458

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 51/439 (11%), Positives = 130/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 31  WDYGPLGIELKNNVKKAWWKKFIQESPHNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 91  KCKARHRADKLIEDALDVKGIEMVVDGLTFDQMADLMKEHEVKCPDCGSQEFTEIRQFNL 150

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E   +
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMTEESMRLRDHGEDELS 268

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     +      E   V++R       F              +      + +  
Sbjct: 269 HYSNATTDIEFRFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 323

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 324 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 380

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 381 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 438

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 439 EQVRMPISELKGFLEKKIQ 457


>gi|154150357|ref|YP_001403975.1| glycyl-tRNA synthetase [Candidatus Methanoregula boonei 6A8]
 gi|153998909|gb|ABS55332.1| glycyl-tRNA synthetase [Methanoregula boonei 6A8]
          Length = 573

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 67/435 (15%), Positives = 133/435 (30%), Gaps = 74/435 (17%)

Query: 84  GRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           G  + Y   ++        +     +   T + +  D  R        LPF   QI   +
Sbjct: 135 GNVEVYNFNLMFQTTIGPGSQRVGYLRPETAQGMFVDFARLLRFYRDKLPFGAVQIGKSY 194

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R+E+ PR G++R REF   +A  F    E ++H   K +  Y         +     A  
Sbjct: 195 RNEISPRQGMIRLREFTQAEAEIFVHPNEKNRHPAFKRYADYRMPLLTYVHQQKCEPAVE 254

Query: 200 GPI----------------GGDLSHEFIVLADTGETQVFCSKD-----------FMDFPI 232
             +                   L+HE +V       ++   +              D  +
Sbjct: 255 MSMREAVDNGIIANEYVAYYVALTHELLVTIGIKPERLRFRQHLPDERAHYATDCWDAEV 314

Query: 233 PSENT-DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
            SE     + +   +       A    +       +    P+          +G +    
Sbjct: 315 YSERFGWVETVGLADRTNYDLNAHAKQSGTSMTVFIQYEAPKKAERRRIIPNMGVLGKQY 374

Query: 292 TKYSLPMSA--------------------------------TFKGADGKDHYVQMGSYGI 319
            + +  + A                                      G++    +     
Sbjct: 375 RQKAKAIFAALETATPTPEGADVTVDGETIHIPADLFEVKDEVVDIRGEEIVPHVIEPSY 434

Query: 320 GAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           G  R+  AV+E ++D             +   VAP ++++  + A D        +I A 
Sbjct: 435 GIDRMCYAVLEQAYDEDTADGEKRTVLRFSPQVAPVQVAVFPLMARD-GLDTLAGEITAT 493

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L K G    +DD G  IG ++   D +G P  + V      +  V ++ R +  +  +++
Sbjct: 494 LQKQGILAEYDDSGA-IGRRYRRQDEIGTPFAITVDYDSKENHTVTLRDRDSMKQVRIAV 552

Query: 432 EEVINYASHRFSNNR 446
           +++    S     +R
Sbjct: 553 DKIPETVSALVRGDR 567



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLW 80
           R G I   S       G   + PLG      +  I R     + G  E+  PT+    ++
Sbjct: 14  RRGFIWPTSECYGAVAGFIDYGPLGAMMKRRIENIWRHFYVVQEGYYEIECPTIAQEAVF 73

Query: 81  VESGRYDSYGKEMLRLADRNDK 102
           + SG    +  +M +     + 
Sbjct: 74  IASGHVKGFSDKMCQCPHCKEY 95


>gi|242208348|ref|XP_002470025.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730925|gb|EED84775.1| predicted protein [Postia placenta Mad-698-R]
          Length = 470

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 63/463 (13%), Positives = 130/463 (28%), Gaps = 77/463 (16%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+Y   + +   R+      +  L     +  S G Y W P G    + +  ++R E  
Sbjct: 58  LSEYKEFLAEAARREHRKIGKEQKLF--FFNDLSPGGYFWRPHGTHVYNTLVELMRSEYI 115

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+    +    L     R                        +      IF S  
Sbjct: 116 KRGYQEVVSCNIDLCALAELQER------------------HALKLMNFPGHCLIFDSRD 157

Query: 123 KSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYN--KMFV 179
           +SY+ LP    +  +  R+E+     G+ R   F+  D + F + P   +  YN      
Sbjct: 158 RSYKELPICMAEFWIVHRNEVSGTLTGLTRVCRFVQDDMHVFCM-PSQEEEIYNLFDFMQ 216

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             +       + S      +               +    Q           IP+     
Sbjct: 217 HIMTSSDSTSVSSCRRGLTTTWARLRRGMRLRTSIEESLGQAISRPVTSGRSIPA----- 271

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
               +  S   + T+ +A     H      S   + R+  R  +                
Sbjct: 272 ----TAPSTARRSTSQFAMRCAAHFNARTSSSTSSFRLKYRSADD--------------- 312

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
            T          V +    +G++    A+I      K + W   +    +          
Sbjct: 313 -TASADKPPSRPVIIHRAILGSLEWFIAIITEHFARKWLFWLSPLQALVVPT-------- 363

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV-------------IV 406
              +   ++  +LS +      D     +  +   +++  +   +             ++
Sbjct: 364 ---EYASEVAQKLSDLRLFADVDSGDNVLPIEIRDSEITQYDFTLTRIAETQCNHYMTVL 420

Query: 407 GSKFVSDSKVEIKHRL---TGIRE-DMSLEEVINYASHRFSNN 445
           G + +    V I+ R    T  +   + LEEV+       ++ 
Sbjct: 421 GQEELGGRSVNIRDRDDISTKAKGHMIPLEEVVQKLIALKNSR 463


>gi|229062588|ref|ZP_04199898.1| Glycyl-tRNA synthetase [Bacillus cereus AH603]
 gi|228716691|gb|EEL68387.1| Glycyl-tRNA synthetase [Bacillus cereus AH603]
          Length = 458

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 51/439 (11%), Positives = 130/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 31  WDYGPLGIELKNNVKKAWWKKFIQESPHNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 90

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 91  KCKARHRADKLIEDALDAKGIEMVVDGLTFDQMADLMKEHEVKCPDCGSQEFTEIRQFNL 150

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 151 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 210

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E   +
Sbjct: 211 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMTEESMRLRDHGEDELS 268

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     +      E   V++R       F              +      + +  
Sbjct: 269 HYSNATTDIEFRFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 323

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 324 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 380

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 381 ATEVFAEL-AKDFVVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 438

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 439 EQVRMPISELKGFLEKKIQ 457


>gi|229827512|ref|ZP_04453581.1| hypothetical protein GCWU000182_02901 [Abiotrophia defectiva ATCC
           49176]
 gi|229788450|gb|EEP24564.1| hypothetical protein GCWU000182_02901 [Abiotrophia defectiva ATCC
           49176]
          Length = 462

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 61/444 (13%), Positives = 137/444 (30%), Gaps = 54/444 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + +  LG +  +NV     ++       E      +    L +   WV SG   S+   +
Sbjct: 32  WDYGNLGVELKNNVKKAWWKKFI----QESPYNVGVDCAILMNPQTWVASGHLGSFSDPL 87

Query: 94  LRLADRNDKAMIYGPTHEEVM--TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +     +++        +     T   RS +  + N     +  + +       +     
Sbjct: 88  MDCKCCHERFRADKLIEDFAKEKTITLRSSVDGWSNEEMKSFVDENEIPCPSCGKHDFTD 147

Query: 152 SREFLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGLKSIP 194
            R+F +       +T +     Y                             ++G     
Sbjct: 148 IRQFNLMFKTFQGITEDSKAVVYLRPETAQGIFVNFKNVQRTSRKKIPFGIGQIGKSFRN 207

Query: 195 MR------AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                     +          F       E   +  +   D+ I       ++ + L   
Sbjct: 208 EITPGNFTFRTREFEQMELEFFCEPGTDMEWFHYWRQFCKDWLI--SLGMKEEEMRLRDH 265

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +  + Y+  +            E   ++ R            + S      F     +
Sbjct: 266 DPEELSFYSKGTTDIEFLFPFGWGELWGIADRTDYDLGRHQ---EISGEPMEYFDDEKKE 322

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQ 359
            +   +    +GA RV  A +  ++D + +          +   +AP K++++ +     
Sbjct: 323 KYIPYVVEPSLGADRVTLAFLCGAYDEEELEGGDVRTVLRFHPFLAPVKVAVLPLSKK-- 380

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  EK++A LSK   +  +DD G  IG ++   D +G P  +       +D  V ++
Sbjct: 381 -LGEGAEKVFAELSK-DWNCEYDDRGA-IGKRYRRQDEIGTPFCITYDFDSETDGMVTVR 437

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R +  +E +++ E+ NY   +F 
Sbjct: 438 DRDSMEQERVAISELRNYFREKFE 461


>gi|296110107|ref|YP_003617056.1| threonyl-tRNA synthetase [Methanocaldococcus infernus ME]
 gi|295434921|gb|ADG14092.1| threonyl-tRNA synthetase [Methanocaldococcus infernus ME]
          Length = 610

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 79/449 (17%), Positives = 149/449 (33%), Gaps = 51/449 (11%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIE 68
           L++ P+       +  +     ++ +   G + W P G+   D +   +       GA+ 
Sbjct: 189 LEKEPK-HVKLIKEKEI---CSNEEASDLGHFRWYPKGKLIRDLIADYVYYLVLSHGAMP 244

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P +   +        D +G+   R     +K ++           I +      + L
Sbjct: 245 VETPVMYDLNNKAIKEHADKFGERQYRFR-MGNKELMLRFAACFGQFMIKKDMYLLPKYL 303

Query: 129 PFTFYQIQLK-FRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           P   Y++    FR E      G+ R R F M D ++  L  E +   + K F   L+   
Sbjct: 304 PLKLYELSTYSFRYEQSGELVGLKRLRAFTMPDMHTVCLNLEQAMEEFEKQFWMCLKTGE 363

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
            L         +   I       F    D                +  E  +  +   L 
Sbjct: 364 DL-------ELDYYVIFRFTKDFFEEHKD------------WFLRMAKEYKERYNKDLLL 404

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
            I+ +    +    D+    + DSL          I+V        + S           
Sbjct: 405 EILPKRKHYWVGKVDI---AVIDSLGRPIENPTVQIDV--------ESSKRFDIKVHADK 453

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                +   S      RV+ A++E   D +   +P  ++P ++ +I++    +   +  E
Sbjct: 454 EIYPIILHCSPTGSIERVICALLER--DMELPYFPIWLSPIQVRVISV---SEKYNEYAE 508

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTG 424
            I   L K       DD   ++G +   A     P  V+VG + V  +   V I+ + T 
Sbjct: 509 NIVKELIKNNIRADLDDRDLRVGKKIREAGKDWVPYVVVVGEEEVKGNKLTVTIREKSTL 568

Query: 425 I---REDMSLEEVINYASHRFSNN--RPV 448
               +  MSLEE+I     +  +   RP+
Sbjct: 569 KEPYKVKMSLEELIKEVKEKCKDKPFRPL 597


>gi|225560003|gb|EEH08285.1| prolyl-tRNA synthetase [Ajellomyces capsulatus G186AR]
          Length = 555

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 1/186 (0%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
            LPLG +  + +  ++ +     GA ++S+ ++ S  LW +SGR      E  +  DR  
Sbjct: 1   MLPLGLRVQEKLERLVDKHMRTLGASKLSLSSISSQALWEKSGRLKK-DSEFFKFQDRKK 59

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
              +  PTHEE +T +    + SY++LP   YQI  K+RDE RPR G++R REF+MKD Y
Sbjct: 60  ARFLLAPTHEEEITSLVAGVMNSYKDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLY 119

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +FD   E +  +YN +  +Y+R+F  L +  I   A+SG +GG+LSHEF +    GE  +
Sbjct: 120 TFDYNAEMAIKTYNAVKDTYVRLFDELRIPYIIATADSGNMGGNLSHEFHLPNPKGEDTI 179

Query: 222 FCSKDF 227
                 
Sbjct: 180 ISCSSC 185



 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 98/198 (49%), Gaps = 24/198 (12%)

Query: 257 AATSDVHNEKLFDSLPENKRVS---ARGIEVGHIFYFGTKYSLPMSATF----------- 302
            A  D  +    D        +      IE+ H F+ GT+YS  ++A+            
Sbjct: 351 GAKLDCISAAAGDQCSRCGEQAVQTHTAIELAHTFHLGTRYSKVLNASVAVPSTLLSNDS 410

Query: 303 --KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                      +QMG +GIG  R+++A+ +S  + KG+ WP ++APF+  +I     D+ 
Sbjct: 411 KANDNSSVSVPLQMGCHGIGVSRMISAIADSLANSKGLNWPRAIAPFEAMIIP----DKG 466

Query: 361 CRDACEKIYARLSKVGCDV---FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  EK+Y  +S++  D      DD  + +  +   ADL+G+P+ ++VG  +  ++K+E
Sbjct: 467 LEEEAEKVYDAISRINIDAVDAIIDDRDKNLAWKLRDADLIGYPVIIVVGKSWRMENKLE 526

Query: 418 IK-HRLTGIREDMSLEEV 434
           ++ HRL  +RE +SL ++
Sbjct: 527 VQCHRLNNLRETVSLPDL 544


>gi|119471074|ref|ZP_01613633.1| histidine tRNA synthetase [Alteromonadales bacterium TW-7]
 gi|119445914|gb|EAW27195.1| histidine tRNA synthetase [Alteromonadales bacterium TW-7]
          Length = 426

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 64/418 (15%), Positives = 119/418 (28%), Gaps = 26/418 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP   +    V  I+RE     G  E+  P ++S DL+  S G   D   KEM   ADRN
Sbjct: 15  LPGDTQIWQKVENILRETVASFGYQEIRFPIVESTDLFKRSIGEVTDIVEKEMYTFADRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
              +   P    V       +   Y      +Y +   FR E   +    +  +F ++  
Sbjct: 75  GDLLTLRPEGTAVCVRAGNQNGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQFGLETF 133

Query: 161 YSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
                  +                        + LG            +     H  ++ 
Sbjct: 134 GIATADIDAEVILLTAQLWKAFGISEHVRLELNSLGSNEARADYRDALVAYLEQHTDVLD 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSLP 272
            D+           +D   P       D   L+  ++  +   +    +  +        
Sbjct: 194 EDSKRRMYSNPLRVLDSKNPDVQAILVDAPKLSEHLDAESKEHFENLCERLDAAGVSYTV 253

Query: 273 ENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             K V         +F       G + ++     + G   +       + G         
Sbjct: 254 NEKLVRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVEQLGGKATPAVGFAMGLERLV 313

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK--VGCDVFWDDMG 385
           ++  + +  G I  ++     + L  +     +       I + L +   G  V     G
Sbjct: 314 LLLQALECVGDIRRNA----DVYLAAMGDKASIQAPI---IASELRRDVAGLRVMVHAGG 366

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHRF 442
                Q   AD     + VI+G   +    V IK+ R    +  + LE+     +   
Sbjct: 367 GNFKKQLKRADKSDALVAVIIGEDELEQGVVTIKYLRERKEQVTLKLEQAKALLAELI 424


>gi|299535815|ref|ZP_07049136.1| glycyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298729015|gb|EFI69569.1| glycyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 461

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 58/442 (13%), Positives = 129/442 (29%), Gaps = 52/442 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + + PLG +  +N+     ++       E      +    L +   WV SG   ++   M
Sbjct: 33  WDYGPLGVELKNNIKKAWWQKF----VQESEYNVGIDAAILMNPKAWVASGHVGNFNDPM 88

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           +       +        +  +       +            I+         +      R
Sbjct: 89  IDCKSCKARHRADKIIEDAALAKGDEIIVDGMTFDQMKETMIKYDVVCPDCGKADFTDIR 148

Query: 154 EFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGL 190
           +F +       +T   +   Y +          F +  R                 R  +
Sbjct: 149 QFNLMFKTFQGVTESSTNEIYLRPETAQGIFVNFKNVQRSMRKRTPFGIAQIGKSFRNEI 208

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                   +          F    +  E   +  +   ++ +       +D + L    +
Sbjct: 209 TPGNFTFRTREFEQMELEFFCKPGEDLEWHAYWKEFCKNWLLN--LGMKEDSMRLRDHED 266

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              + Y+  +     K      E   V+ R            ++S            + +
Sbjct: 267 DELSHYSNATTDIEFKFPFGWGELWGVADRTDYDLKQH---MEHSGEDFTYIDPVSNERY 323

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVC 361
                   +GA RV  A +  ++D + +          +  ++APFK +++ +       
Sbjct: 324 VPYCIEPSLGADRVTLAFLCDAYDEEELEGDDKRTVLRFHPALAPFKAAVLPLSKK---L 380

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D    ++A L K    V +D+  + IG ++   D +G P  +        D +V ++HR
Sbjct: 381 SDEATDVWAELRKA-FPVDFDES-QSIGKRYRRQDEIGTPFCITYDFDSKEDGQVTVRHR 438

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            +  +  M + EV  Y      
Sbjct: 439 DSMTQVRMPIAEVKAYIEKHLQ 460


>gi|113955389|ref|YP_729468.1| histidyl-tRNA synthetase [Synechococcus sp. CC9311]
 gi|123328026|sp|Q0IDK4|SYH_SYNS3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|113882740|gb|ABI47698.1| histidyl-tRNA synthetase [Synechococcus sp. CC9311]
          Length = 428

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 68/423 (16%), Positives = 121/423 (28%), Gaps = 23/423 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP   +    V ++ RE     G  E+  P L+  DL+        D  GKEM  
Sbjct: 9   GMVDLLPEQTRRWQAVESVAREHFRCAGLDEIRTPLLEFTDLFARGIGEGTDVVGKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR D++    P     +      H    +     +Y     FR E        R R+F
Sbjct: 69  FLDRGDRSCTLRPEGTASVVRAALQHGLLSQGAQRLWYG-GPMFRYERPQAG---RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                     +   S      +    L      GL        +         E +   +
Sbjct: 125 HQIGVEFLGASSPRSDAEVIALAWDLLTDLGIQGLNLEINSLGTPDDRQRFRSELVQWLE 184

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN----------- 264
               Q+           P    D  D  +   + +  T   A + +  +           
Sbjct: 185 ERVEQLDAESQARLTTNPLRILDSKDKGTQQLLNDAPTLLKALSKESVDRFEQVCALLTA 244

Query: 265 ----EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                +L   L                   G + ++     + G   +       + G  
Sbjct: 245 LQIPYQLNPRLVRGLDYYGHTAFEITSDQLGAQATVCGGGRYDGLIQQLGGPVTPAIGWA 304

Query: 321 -AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
             M  +  VI ++           +      L+ +    +        +  +    G  V
Sbjct: 305 LGMERLLLVISAAAQADPDGAAARLTATPSPLVYVINRGEQAEPQALSLARQWRGAGLAV 364

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYA 438
             D      G QF  AD  G P  V++G +  S  +V +K  R  G  + ++ E+ ++Y 
Sbjct: 365 ELDGSSASFGKQFKRADRSGAPWAVVLGDEEASAGQVRLKPLRGEGEEKQLTWEDALSYL 424

Query: 439 SHR 441
             +
Sbjct: 425 MKQ 427


>gi|229026377|ref|ZP_04182734.1| Glycyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228734840|gb|EEL85478.1| Glycyl-tRNA synthetase [Bacillus cereus AH1272]
          Length = 487

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 51/439 (11%), Positives = 131/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 60  WDYGPLGIELKNNVKKAWWKKFIQESPYNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 119

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 120 KCKARHRADKLIEDALDAKGIEMVVDGLTFDQMADLMKEHEVKCPDCGSQEFTEIRQFNL 179

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 180 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 239

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E+  +
Sbjct: 240 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMTEESMRLRDHGEEELS 297

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     +      E   V++R       F              +      + +  
Sbjct: 298 HYSNATTDIEFRFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 352

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 353 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 409

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 410 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 467

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 468 EQVRMPISELKGFLEKKIQ 486


>gi|11499232|ref|NP_070470.1| histidyl-tRNA synthetase [Archaeoglobus fulgidus DSM 4304]
 gi|3334353|sp|O28631|SYH_ARCFU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|2648908|gb|AAB89600.1| histidyl-tRNA synthetase (hisS) [Archaeoglobus fulgidus DSM 4304]
          Length = 409

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 69/413 (16%), Positives = 135/413 (32%), Gaps = 22/413 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   +LP   +    +   +R+     G  E++ PT +  +L+  +SG  +   +EM   
Sbjct: 8   GTRDFLPDEMERRREIEKRMRKIAESFGYREVATPTFEYLELFTRKSG--EGIIEEMYVF 65

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D++ + +   P     +  +F +   S    P  FY     FR E   +    R REF 
Sbjct: 66  KDKSGRDLALRPELTAPVMRMFVNEC-SVMPKPLRFYYFANCFRYERPQKG---RYREFW 121

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL----KSIPMRAESGPIGGDLSHEFIV 212
                        +      +    L+               MR    PIG D + + + 
Sbjct: 122 QFGVELIGSESYLADAEVIILADKILKDVGVNFSLEIGHVGIMRHLLKPIGEDRASKVMR 181

Query: 213 LADTGETQ---VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           L D G+ +    + ++  ++  +  +     ++    S++E+  A      D  + +   
Sbjct: 182 LIDKGDREGLESYLAEIRVNEDLRDKIFSLLELKGDESVIEE--AKEIIDYDFGHLESLS 239

Query: 270 SLPENKRVSA---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           +L  +  V      GI  G  +Y G  +                     S   G     +
Sbjct: 240 ALLRDVGVDFTLNLGIARGLDYYTGVVFECYAEGLGAQKQVCGGGSYELSSLFGGPVTPS 299

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                  D              +  +      +       ++ + L + G     D MG 
Sbjct: 300 TGFAIGFDRVCEACSVEAGEKSVVAVVSFKGLESQ---AFRVASMLRERGFTAVVDVMGR 356

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +  Q + A  +G    VI+G   V   +V IK+  T  +  ++ EE+ +   
Sbjct: 357 NLKKQMSFASEMGVKYAVILGPDEVKSGRVAIKNLETQEQVVVAEEELFSILQ 409


>gi|87118881|ref|ZP_01074780.1| glycyl-tRNA synthetase [Marinomonas sp. MED121]
 gi|86166515|gb|EAQ67781.1| glycyl-tRNA synthetase [Marinomonas sp. MED121]
          Length = 458

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 63/452 (13%), Positives = 134/452 (29%), Gaps = 45/452 (9%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G I Q S      +G Y + PLG +  +N+           R     +    +Q+  +
Sbjct: 15  RRGFIFQGSEIYGGMQGAYDYGPLGVELKNNLKNAWWRAMVYERDDVEGLDAAIVQNKLV 74

Query: 80  WVESGRYDSYGKEM---LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           +  SG  D++   M        R     +      +       +  + +  +      + 
Sbjct: 75  YKYSGHEDTFTDPMVDCHECKARMRADHMKDIKVCDNCGSSDVTEPRDFNLM--FKTNVG 132

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
               +E         ++          D T         ++  S+               
Sbjct: 133 PMVDEESYTYLRPETAQGIFTNFKNVVDSTSRALPFGIAQIGKSFRNEITPRNFIFRVRE 192

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
            E   +      EF       E                +    ++I       +  +   
Sbjct: 193 FEQMEL------EFFCKPGEDEKWHETWVALRKQWWLDQGLGEENIEFEYVTGDDLSHYS 246

Query: 257 AATSDVHNEKLFDSLPENKRVSAR-----------GIEVGHIFYFGTKYSLPMSATFKG- 304
            +T D+   K      E + V+ R             E G                 +  
Sbjct: 247 KSTVDILY-KFPHGFEELEGVANRTDYDLGSHTKAQAEFGITANVKENSDSTAKLAVRDL 305

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIK 355
           A+ K           G  R V AV+  ++  + +          +   +AP K++++ +K
Sbjct: 306 AENKWEVPFCIEPSAGLDRGVLAVMTEAYTEEELADGKSRTVLKFKPHLAPIKVAIMPLK 365

Query: 356 AHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS-D 413
            +        +++  +L K+G   + +++ G  +G  +   D +G P+ V V    +  +
Sbjct: 366 KNKPEIVALAKELKNKLQKLGLGRILYENTG-NVGKGYRRHDEVGTPICVTVDFDSIEKE 424

Query: 414 SK-VEIKHRLTGIREDMSLEEVINYASHRFSN 444
              V ++ R T  +  +   E+  Y  + F N
Sbjct: 425 GAPVTVRDRDTMEQITVPAAELAGYVVNYFIN 456


>gi|321310208|ref|YP_004192537.1| glycyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
 gi|319802052|emb|CBY92698.1| glycyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
          Length = 428

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 60/417 (14%), Positives = 129/417 (30%), Gaps = 43/417 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            G Y +  LG      +  +        +  +  +      S D+W  SG  +++   ++
Sbjct: 27  SGYYDYGHLGVLLKKKIQRLWERYFVDRKPNSYYLDATIFTSGDVWKASGHMENFNDILV 86

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D   +        +        +   S                 E +P   + R++E
Sbjct: 87  DCKDCKKR-YREDHLPDSGGIKKCPNCGASNWT--------------EAKPFNLIFRAQE 131

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE----- 209
                  +        K               ++G         S  I      E     
Sbjct: 132 DHYLRPETAQSIFINFKGFLRSTNAKIPFCICQVGKAFRNEVTISNFIFRTKEFEQMECE 191

Query: 210 -FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            FI   D  +    C K+   F +       + I  +    E      + +SDV  E   
Sbjct: 192 WFIHPNDAMDVFTQCQKEMEIFLVNILGIKREMIKVVEIPKEDRAHYSSRSSDVEFE-FP 250

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               E   ++ R           +         F       +   +  + IG  R++ AV
Sbjct: 251 HGWGELWGLAYRSDFDLLSHQNASGKDHQYLDPFTNEK---YVPHVVEHSIGLNRLLYAV 307

Query: 329 IESSHDGKGIIWPDSVA---------PFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           + S+++ + +   +S           P+  S++ +  ++   +D  + ++  L + G   
Sbjct: 308 VSSAYEVEQLENGESRELLRISKDLAPYLFSILPLTKNE---KDLAQDLFLELIENGISS 364

Query: 380 -FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDMSLEEV 434
              D     IG ++   DL+G P  + +  +   D+    ++ R + +++ +SLEE 
Sbjct: 365 SLLD--KGSIGKRYRKNDLIGTPYCITLDQETSRDNFSFTVRDRDSMLQKRISLEEF 419


>gi|150399970|ref|YP_001323737.1| glycyl-tRNA synthetase [Methanococcus vannielii SB]
 gi|166227937|sp|A6URK3|SYG_METVS RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|150012673|gb|ABR55125.1| glycyl-tRNA synthetase [Methanococcus vannielii SB]
          Length = 574

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 89/286 (31%), Gaps = 25/286 (8%)

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE--------FIVLADTGET 219
                 Y            R G       A+          +        F+   ++ E 
Sbjct: 303 PNEMAHYAADCWDAELYTDRYGWIECVGIADRTDYDLRAHMKNSGEDLSVFVEFDESKEI 362

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           +V+  +           T   D   L   +++        S+   E+L  +L  N++   
Sbjct: 363 EVYEIELNYKLVG---KTFKGDAKILEESLKEL-------SNDKMEELIKTLKNNEKYIL 412

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +       F    +Y        K   G+     +     G  R+   VIE +   +   
Sbjct: 413 KT--CKRDFEVLNEYLTVKKVK-KNVTGEKIVPHVIEPSYGIDRITYCVIEHAFKEEDDR 469

Query: 340 WPDSVAPFKISLINIK---AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
              +       +        + +   +  E +  +  K G    +DD G  IG ++   D
Sbjct: 470 TLLAFVNTVSPVKVGVFPLVNKEGMDEIAENLKNKFRKNGIIAEYDDSGA-IGRRYMRMD 528

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +G P  V V  + + D+ V I+ R +  +  + L+ V++Y   + 
Sbjct: 529 EIGTPFCVTVDGETLKDNTVTIRERDSREQFRIPLDGVVDYIKEKL 574



 Score = 54.0 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 1/109 (0%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G + + PLG     +V    R+      G  E+  PT+   ++   SG  +++   ++ 
Sbjct: 28  AGFFDYGPLGAILKSSVINTWRKHYIINEGFYEIDSPTVNPYEVLKASGHVENFTDPLVE 87

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
                +         E +  D     +   + +         K   E +
Sbjct: 88  CKSCLESFRADHIIEENIEVDTEGKTLNELQEMIEKNNIKCPKCGGEFK 136


>gi|86607115|ref|YP_475878.1| histidyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
 gi|123724539|sp|Q2JRX6|SYH_SYNJA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|86555657|gb|ABD00615.1| histidyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 419

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 66/412 (16%), Positives = 122/412 (29%), Gaps = 20/412 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    V A  RE   R    E+  P L+  +L+  S     D  GKEM   + R 
Sbjct: 14  LPQEVRLWQQVEASAREILGRANYQEIRTPILELTELFARSIGSATDVVGKEMYSFSTRG 73

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +   P +   +   +  H           +     FR E        R R+F     
Sbjct: 74  EQEVSLRPENTAGVVRAYIQHGLQVAGDVQRLWYCGPMFRYERPQAG---RQRQFHQLGV 130

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD----- 215
                    +             +   +G +++ +R  S     D       L D     
Sbjct: 131 ELLGSRDPRADAEV---IALAWDLLRAVGAENLTLRLNSLGDPQDRRAYRQALVDYLTPL 187

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--- 272
             E  +   +  +  P+   ++      ++     +     +A S    E++   L    
Sbjct: 188 KEELDLDSQERLVRNPLRILDSKDPHTRTIAEQGPKLPDYLSADSRAFFEQVQAHLQALD 247

Query: 273 ---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E      RG++      F        S +     G+   +     G     V  A+ 
Sbjct: 248 IPYELDPYLVRGLDYYTHTAFEIVSPELGSQSTVCGGGRYDGLVEELGGPPTPAVGWAIG 307

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                         + P  + +  I            +I   L + G     D  G    
Sbjct: 308 LERLVLLLQKKQQEIPPTSVEVYVISRG-AKAEAQSLQIAQALRQAGFCTELDLSGSAFS 366

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            QF  A   G    V +G    +  +V++KH  TG ++ +   +++ Y   +
Sbjct: 367 KQFKRASRSGATWAVALGDAEAAAGEVQLKHLPTGQQQTLLQADLVKYLVSQ 418


>gi|163802474|ref|ZP_02196367.1| histidyl-tRNA synthetase [Vibrio sp. AND4]
 gi|159173775|gb|EDP58590.1| histidyl-tRNA synthetase [Vibrio sp. AND4]
          Length = 422

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 58/415 (13%), Positives = 123/415 (29%), Gaps = 22/415 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKEMLRLA 97
           LP        +   ++   +  G  E+ +P ++  +L+      E+   D   KEM    
Sbjct: 15  LPTQSPLWQKLENAVKNTVSAYGYNEVRMPIVEETNLFSRAVGEET---DVVSKEMYTFD 71

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSR 153
           DRN  ++   P            +    R+    +Y +   FR E       R       
Sbjct: 72  DRNGDSLTLRPEGTAGCVRACIQNSLINRDEQRLWY-MGPMFRHERPQKGRYRQFHQCGV 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           E    +    D           +            + +G +       +  +     H  
Sbjct: 131 EVFGLNGPDVDAELIMMTARLWRELGINEHVRLELNSIGSQEDRADYRTALVAFLEQHID 190

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFD 269
           ++  D            +D   P       D   L   + E+  A +A   ++ +    +
Sbjct: 191 VLDEDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSEYLGEESKAHFAGLCELLDAAGIE 250

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                + V         +F +    +  + A      G  +   +   G  +   V   +
Sbjct: 251 YTVNERLVRGLDYYNRTVFEW---ITESLGAQGTVCGGGRYDGLVEQLGGKSTPAVGFAM 307

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQ 387
                   +   +     +   + +    +    A  K+  +L +   G  V     G  
Sbjct: 308 GLERLVLMLETLELTEVRRSVDVYVVTAGEGTMMAGMKLAEQLREAAPGVRVMNHFGGGN 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              QF  AD +G  + +++G   V+++ V +K  + G +E  +  EV    +   
Sbjct: 368 FKKQFKRADKVGAVVALVLGENEVAENTVVLKDLVGGEQETYNQSEVAEKIAALI 422


>gi|324998808|ref|ZP_08119920.1| glycyl-tRNA synthetase [Pseudonocardia sp. P1]
          Length = 468

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 60/436 (13%), Positives = 125/436 (28%), Gaps = 40/436 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  DN+     +     R   + +    +     WV SG   ++   ++   
Sbjct: 37  WDYGPLGVELKDNIKRQWWKTVVTGRDDVVGLDSSVILPRQTWVASGHVGTFSDPLVECE 96

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL- 156
             + +        E               +L                PR   M  + FL 
Sbjct: 97  SCHKRYRADQLAEEFAERKGRDPEQADQNDLSEVPCPNCGTRGQFTAPREFNMMLKTFLG 156

Query: 157 -MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLS 207
            ++           +       F++      +         G            I     
Sbjct: 157 PVESEEGLHYLRPETAQGIFVNFLNVQTTSRKKPPFGIGQIGKSFRNEITPGNFIFRTRE 216

Query: 208 HEFIVL-------ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
            E + +       +D    Q +  +    +         D++       E+ +     T 
Sbjct: 217 FEQMEMEYFVEPGSDEELHQYWIDERTRWYT--DLGISPDNLRHYEHAKEKLSHYSKRTV 274

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYG 318
           D+     F      +     GI     F       +S    + +  A    +   +    
Sbjct: 275 DIEYRFNFTGQEWGELE---GIANRTDFDLTAHSNHSGVDLSFYDQATDTRYKPYVIEPA 331

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAP------FKISLINIKA------HDQVCRDACE 366
            G  R + A +  ++                       L  +KA       +       +
Sbjct: 332 AGVGRSMMAFLIEAYTEDEAPNAKGGVDKRVVLKLDRRLAPVKAAVLPLSRNADLSPKAK 391

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + A+L K   +V +DD G  IG ++   D +G P  + V    ++D  V I+ R +  +
Sbjct: 392 DLAAQLRKNW-NVDFDDAGA-IGRRYRRQDEIGTPFCITVDFDTLTDQAVTIRERDSMAQ 449

Query: 427 EDMSLEEVINYASHRF 442
           E ++L++V  + + R 
Sbjct: 450 ERVALDQVETWLATRL 465


>gi|269836498|ref|YP_003318726.1| glycyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
 gi|269785761|gb|ACZ37904.1| glycyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
          Length = 469

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 58/452 (12%), Positives = 129/452 (28%), Gaps = 41/452 (9%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G + Q S    G+   + + PLG +   N+         Q R   + +    L     
Sbjct: 22  RRGFVFQGSEIYGGLANTWDYGPLGVELRRNIKNAWWHFFVQLRRDIVGLDGSILLHPRA 81

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG  D +   ++   +            EE +                    +    
Sbjct: 82  WEASGHVDEFNDPLVDCRNCQ-TRYRADNLIEERLGRNVDGATIEEMTRVIKESNLACPV 140

Query: 140 RDELRPRFGVMRSREF------LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKS 192
             +         +  F      +        L PE ++  +            +     +
Sbjct: 141 CGQRDWTEVRQFNLMFRTFLGPVEASGTQAFLRPETAQAIFLDYRNVLQSSRVKIPFGIA 200

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD----FPIPSENTDFDDIISLNSI 248
              +A    I        ++  +  E + F   +  +      + +    F  I    + 
Sbjct: 201 QIGKAFRNEITPGNFIFRLLEFEQMEIEYFIRPEGWEPVFEEWLDAMQAFFRFIGLGEAR 260

Query: 249 VEQWTAPYAATSDV--HNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKG 304
           + Q        S             P   +    G+     F      +YS      F  
Sbjct: 261 LRQREHGPDELSHYSKRTVDFEYEFPFGWKELC-GLAYRTDFDLRRHQEYSGVDLTYFDQ 319

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI-------------IWPDSVAPFKISL 351
           A G+     +    +G  R++ A++  ++  +                +   +AP+K ++
Sbjct: 320 ATGERFLPHVVEPTMGVERLMLALMVDAYHEEDAVDVAGKPYRRVVLRFHPRMAPYKAAV 379

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +            +++  L        +D+  + IG ++   D +G P  V +    +
Sbjct: 380 LPL-MKKPELVAKANEVWDLLRPE-FPTDYDET-QSIGRRYRRQDEIGTPFCVTIDYDTL 436

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            D  V I+ R +  +  + + E++     R  
Sbjct: 437 EDDSVTIRDRDSMEQVRVPIAELVPTLRERLE 468


>gi|15897317|ref|NP_341922.1| threonyl-tRNA synthetase [Sulfolobus solfataricus P2]
 gi|284173344|ref|ZP_06387313.1| threonyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
 gi|13813530|gb|AAK40712.1| Threonyl-tRNA synthetase homolog (thrS-like) [Sulfolobus
           solfataricus P2]
 gi|261601991|gb|ACX91594.1| Threonyl-tRNA synthetase editing domain protein [Sulfolobus
           solfataricus 98/2]
          Length = 386

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 59/139 (42%), Gaps = 3/139 (2%)

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
            +V      +   R++   I  S   +    PD + P ++ L+ +K       D   ++ 
Sbjct: 239 WWVNESKIYVDVGRLIYYFILESVKQQPPTLPDWLNPIQVRLLPVKKD---FLDFSIQVA 295

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            RL K G  V  DD+ + +G++   A     P  +++G + V  + + +K R    ++ M
Sbjct: 296 ERLRKEGIRVNIDDLDDSLGNKIRRAGTDWIPFVIVIGEREVKTNTLTVKIRARNEQKSM 355

Query: 430 SLEEVINYASHRFSNNRPV 448
           ++EE++          + +
Sbjct: 356 TVEELVKEIKDEVKERQNL 374


>gi|153833517|ref|ZP_01986184.1| histidyl-tRNA synthetase [Vibrio harveyi HY01]
 gi|269962410|ref|ZP_06176760.1| histidyl-tRNA synthetase [Vibrio harveyi 1DA3]
 gi|148870168|gb|EDL69109.1| histidyl-tRNA synthetase [Vibrio harveyi HY01]
 gi|269832906|gb|EEZ87015.1| histidyl-tRNA synthetase [Vibrio harveyi 1DA3]
          Length = 422

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 58/415 (13%), Positives = 122/415 (29%), Gaps = 22/415 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKEMLRLA 97
           LP        +   ++   +  G  E+ +P ++  +L+      E+   D   KEM    
Sbjct: 15  LPTQSPLWQKLENAVKSTVSAYGYNEVRMPIVEETNLFSRAVGEET---DVVSKEMYTFD 71

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSR 153
           DRN  ++   P            +    R+    +Y +   FR E       R       
Sbjct: 72  DRNGDSLTLRPEGTAGCVRACIQNSLINRDEQRLWY-MGPMFRHERPQKGRYRQFHQCGV 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           E    +    D           +            + +G +       +  +     H  
Sbjct: 131 EVFGLNGPDVDAELIMMTARLWRELGINEHVRLELNSIGSQEDRADYRTALVAFLEQHID 190

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFD 269
           ++  D            +D   P       D   L   + E+  A +A   ++ +    +
Sbjct: 191 VLDEDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSEYLGEESKAHFAGLCELLDAAGIE 250

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                + V         +F +    +  + A      G  +   +   G  A   V   +
Sbjct: 251 YTVNERLVRGLDYYNRTVFEW---ITESLGAQGTVCGGGRYDGLVEQLGGSATPAVGFAM 307

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQ 387
                   +   +     +   + +    +       K+  +L +   G  V     G  
Sbjct: 308 GLERLVLMLETLELTDVRRSVDVYVVTAGEGTMMVGMKLAEQLREAIPGVRVMSHFGGGN 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              QF  AD +G  + +++G   V+++ V +K  + G +E  +  EV    +   
Sbjct: 368 FKKQFKRADKVGAVVALVLGENEVAENTVVLKDLVGGEQETYNQAEVAEKIAALI 422


>gi|257052564|ref|YP_003130397.1| glycyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
 gi|256691327|gb|ACV11664.1| glycyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
          Length = 586

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 84/280 (30%), Gaps = 16/280 (5%)

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             Y++                  +         D            E  +F      D P
Sbjct: 307 AHYSEDCWDAEGDVSDPDEDPDWIELGGFAYRADYDLSKHDAHSEAEFTIF---KQYDDP 363

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           +  E    D    +  +  ++       +D       D  P+        +EV    Y  
Sbjct: 364 VTVEQPTVD--PEMGYLGPEFGGAAGDVADALEALAEDD-PDAFAGEDVTVEVDGEAYTV 420

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH--------DGKGIIWPDS 343
                  +       G+     +    +G  R +   ++ S+        +   +  P +
Sbjct: 421 PVEQTGFAIEEVTESGEHIMPHVVEPSLGIDRALYTALDHSYREDEVDGEERTYLELPPA 480

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           VAP  + +  +   D    +   +I A L   G  V +DD G  IG ++   D +G P  
Sbjct: 481 VAPTTVGVFPLMDKD-GLGERAREIAAELRADGLAVAYDDSGA-IGRRYRRQDEVGTPYC 538

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           V V    + D  V I+ R +  +  ++ +++ +       
Sbjct: 539 VTVDYDTLEDGTVTIRDRDSTDQTRVAADDLASTIEALVE 578



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 8/124 (6%)

Query: 24  KLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQS 76
           +L  R G   Q +       G Y++ P G     NV    R+    + G +E+  PT+  
Sbjct: 11  ELAKRRGFFLQSADAYGGVSGFYTFGPQGAAMKRNVEETWRDRFAIQEGHMEIDAPTVLP 70

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             ++  SG  D +   ++   +   ++       E+  T I  +   +   +     + +
Sbjct: 71  EPVFEASGHLDGFDDMLVECPEC-GQSHRADHIVEDGETGIEEAESLAPERIEEVVAEYE 129

Query: 137 LKFR 140
           L   
Sbjct: 130 LACP 133


>gi|156973381|ref|YP_001444288.1| histidyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116]
 gi|166228629|sp|A7MZE2|SYH_VIBHB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|156524975|gb|ABU70061.1| hypothetical protein VIBHAR_01068 [Vibrio harveyi ATCC BAA-1116]
          Length = 422

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/415 (13%), Positives = 122/415 (29%), Gaps = 22/415 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKEMLRLA 97
           LP        +   ++   +  G  E+ +P ++  +L+      E+   D   KEM    
Sbjct: 15  LPTQSPLWQKLENAVKSTVSAYGYNEVRMPIVEETNLFSRAVGEET---DVVSKEMYTFD 71

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSR 153
           DRN  ++   P            +    R+    +Y +   FR E       R       
Sbjct: 72  DRNGDSLTLRPEGTAGCVRACIQNSLINRDEQRLWY-MGPMFRHERPQKGRYRQFHQCGV 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           E    +    D           +            + +G +       +  +     H  
Sbjct: 131 EVFGLNGPDVDAELIMMTARLWRELGINEHVRLELNSIGSQEDRADYRTALVAFLEQHID 190

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFD 269
           ++  D            +D   P       D   L   + E+  A +A   ++ +    +
Sbjct: 191 VLDEDCKRRMHTNPLRVLDTKNPEVQAILGDAPRLSEYLGEESKAHFAGLCELLDAAGIE 250

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                + V         +F +    +  + A      G  +   +   G  A   V   +
Sbjct: 251 YTVNERLVRGLDYYNRTVFEW---ITESLGAQGTVCGGGRYDGLVEQLGGSATPAVGFAM 307

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQ 387
                   +   +     +   + +    +       K+  +L +   G  V     G  
Sbjct: 308 GLERLVLMLETLELTDVRRSVDVYVVTAGEGTMMVGMKLAEQLREAIPGVRVMSHFGGGN 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              QF  AD +G  + +++G   V+++ V +K  + G +E  +  EV    +   
Sbjct: 368 FKKQFKRADKVGAVVALVLGENEVAENTVVLKDLVGGEQETYNQAEVAEKIAALI 422


>gi|218289124|ref|ZP_03493360.1| glycyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240707|gb|EED07886.1| glycyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
          Length = 464

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 67/458 (14%), Positives = 139/458 (30%), Gaps = 51/458 (11%)

Query: 28  RTGMI---HQHSKGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADL 79
           R G I    +   G+   + + PLG +   N+             + +      L +  +
Sbjct: 14  RRGFIFPGSEIYGGLANTWDYGPLGAQVKHNLKRAWWRFFIEQNPLNVGLDSAILMNKQV 73

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           WV SG   ++   M+       +        E          +             +L+ 
Sbjct: 74  WVASGHVANFHDPMVDCRQCKARFRADKLIEEAAEAKGKSVVVDGLPFAEMERLMEELQI 133

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYL 182
                        R+F M       +T + +   Y                   M     
Sbjct: 134 ACPNCGARDFTNVRQFNMMFRTFQGVTEDAANEVYLRPETAQGIFVNFKNVQRTMRKKLP 193

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHE------FIVLADTGETQVFCSKDFMDFPIPSEN 236
               + G            I      E      F    +  +  V+  +  MD+ + S  
Sbjct: 194 FGIGQFGKSFRNEITPGNFIFRTREFEQMELEFFCAPGEDEKWFVYWRQTCMDWLL-SLG 252

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              D++   +   EQ +    AT+D+   +      E   V+ R            ++S 
Sbjct: 253 IKPDNLRFRDHAKEQLSHYSKATTDI-EYRFPFGWGELLGVANRTDYDLKAHQ---EHSG 308

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPF 347
                 +    +          IGA R+  AV   ++D + +              +AP+
Sbjct: 309 ENMM-VQEEGQEPFIPYCIEPSIGADRLFLAVFADAYDEEEVSEGDTRVVLRLHPKLAPY 367

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +++++ +        +   ++Y  L K      +D+ G  IG ++   D +G P  V   
Sbjct: 368 QVAVLPLSKK---LNEPAHRLYLDLIKH-YSADYDETG-SIGKRYRRQDEIGTPFCVTYD 422

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +  SD +V I+ R +  +  + +E V  +   +  ++
Sbjct: 423 FESESDGQVTIRMRDSMDQVRIPIEGVRTWLDEQLQSS 460


>gi|23099475|ref|NP_692941.1| histidyl-tRNA synthetase [Oceanobacillus iheyensis HTE831]
 gi|32130108|sp|Q8EPR9|SYH_OCEIH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|22777704|dbj|BAC13976.1| histidyl-tRNA synthetase [Oceanobacillus iheyensis HTE831]
          Length = 429

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/421 (11%), Positives = 118/421 (28%), Gaps = 14/421 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP          + I+E  +     E+  P  +  +++        D   KEM  
Sbjct: 8   GTVDLLPEQSIKWQFAESKIKEICHNYHYQEIRTPLFEHTEVFQRGVGDTTDIVQKEMYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             DR  +++   P     +      + +    N P   +     FR E   +  + +  +
Sbjct: 68  FEDRGGRSLTLRPEGTASVARAYVENKLFGSPNQPTKLFYFGSMFRYERPQKGRMRQLNQ 127

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--------IGGDL 206
           F           P       +     Y  +  +     I    +           I    
Sbjct: 128 F--GTEVIGSEDPAVDAEVMDFAMNIYKSLGLKSVKLVINSLGDQESRESHRNALIQHFE 185

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            H   +  D            +D     ++        +   + +++  Y A    + + 
Sbjct: 186 PHREELCHDCQNRLDKNPLRVLDCKKDRDHPAMGTAPKITDFLNEYSKTYFADVMTYLDA 245

Query: 267 L-FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           L  + + +   V          F   ++     + T     G+ + +     G  +  + 
Sbjct: 246 LDIEYVVDPNLVRGLDYYNHTAFEIMSEAEGFGAITTLAGGGRYNGLVEEFGGPSSPGIG 305

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +              ++   +     +       +    K+  RL   G     D   
Sbjct: 306 FGMGLERLIMALEAENITLPIDQQLDCFVANMGDESKLEATKVVKRLRDNGIQADMDYQK 365

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++  Q   AD       + +G   +   +V +K   TG + ++S+ +++     + +  
Sbjct: 366 RKMKGQLKAADRYQSKFVIFLGDDEIEKQEVTLKEMSTGDQSEVSMSQLVEVLQEKLNGG 425

Query: 446 R 446
           +
Sbjct: 426 K 426


>gi|302391507|ref|YP_003827327.1| histidyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501]
 gi|302203584|gb|ADL12262.1| histidyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501]
          Length = 420

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/404 (13%), Positives = 111/404 (27%), Gaps = 13/404 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    R+   R    E+  P  ++ DL+        D   KEM    D+  +++   
Sbjct: 20  WQYIEDTARDICTRYNYEEIRTPIFENTDLFQRGIGEATDIVEKEMYTFNDKGGRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  H    +  P  ++     FR E        R R+F            
Sbjct: 80  PEGTASVVRAFLEHKIYGQAQPTKYFYYGPMFRYERPQSG---RYRQFHQMGVEVLGTDS 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF--IVLADTGETQVFCSK 225
                    + +  L+      L+             D   E       D  E    C  
Sbjct: 137 PAIDAEVISLGLQILKELGLSDLEVHLNSVGCPVCREDYREELRDHFADDLEELCSDCQS 196

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA------ 279
            +   P+   +   +      +   +           H +++ + L              
Sbjct: 197 RYDRNPLRILDCKNEKCQEYTADAPEIIDSLCEDCADHFKEVQNYLQRLDIDYIIDSSLV 256

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG++      F   Y+   +       G+   +     G     +  A+           
Sbjct: 257 RGLDYYTKTAFEIMYTGLGAQDTIFGGGRYDGLAEEIGGREIPGIGFAMGMERIILALEE 316

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
               +       + I    Q  ++   +   +L + G  V  D +G  +  Q   AD   
Sbjct: 317 QDVDLPLTTDLDLFITTIGQPAKETAFEYLYQLRQAGLKVEMDYLGRSVKGQMKCADRTN 376

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               +I+G   +      +++  TG   ++ L  ++   +   +
Sbjct: 377 AQYSIILGGNELEKGTATVRNMETGEETEIKLNNLVEEMNELIA 420


>gi|189501797|ref|YP_001957514.1| glycyl-tRNA synthetase [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497238|gb|ACE05785.1| hypothetical protein Aasi_0361 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 496

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/482 (12%), Positives = 137/482 (28%), Gaps = 71/482 (14%)

Query: 20  IASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV-- 71
           I SH      G I+  S      + +Y + P G     NV  +  +   +  +  + +  
Sbjct: 12  IVSHAKE--YGFIYPSSEIYEGLQAVYDYGPYGAALKRNVQNLWWQSMTQLHSNIVGMDA 69

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--- 128
             L     W  SG  DS+   M+   D   +        E    ++     K+       
Sbjct: 70  AILMHPRTWKASGHVDSFEDLMVDNKDSKKR-YRIDVLIENHAAELSAQGEKTRAQELLE 128

Query: 129 --------PFTFYQIQLKFRDELRPRFGVMRSR----EFLMKDAYSFDLTPEGSKHSY-- 174
                           L  ++++        +      F +  A       E +   Y  
Sbjct: 129 KLQALLQAEELAGLHTLLLQEKIVCPISRTANWTEVHRFNLMFATKVGAQEENADTIYLR 188

Query: 175 ---------------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE-----FIVLA 214
                              +       ++G            I      E     F +  
Sbjct: 189 PETAQGIFVNFLNVQKTARMKVPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFFIQP 248

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            + E      +        +     + +           A YA  +     +      E 
Sbjct: 249 GSEEKWFNYWQQARWQWHIALGLTEEKLRIKPH---AQLAHYAKAAVDIEYQFPFGYKEI 305

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH- 333
           + + AR           ++  L     F     +++   +    +G+ R++  ++  +  
Sbjct: 306 EGIHARSDFDLKNHEVASRKKLQY---FDPELNQNYLPHVIETSLGSDRLILMLLCEAFT 362

Query: 334 -----------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD-VFW 381
                          +    ++AP K ++  +   D       ++I+  L     D    
Sbjct: 363 EETITEEESAKTRTYLKLHPALAPIKAAIFPLVKKDN-LPQKAQEIFKSLK---YDFPLI 418

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +  + IG ++A  DL+G P  + +  + + D  V ++ R +  +E + +  + ++   +
Sbjct: 419 YEENQSIGKRYARQDLIGTPYCITIDHQTLEDDTVTLRERDSMQQERVHVNILRDFLLEK 478

Query: 442 FS 443
            S
Sbjct: 479 VS 480


>gi|156740073|ref|YP_001430202.1| glycyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
 gi|156231401|gb|ABU56184.1| glycyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
          Length = 530

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 81/522 (15%), Positives = 159/522 (30%), Gaps = 117/522 (22%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNA-IIR-EEQNRTGAIEMSVPTLQSADL 79
           R G +   S      +G++ W PLG +  +N+ A   R     R     +    L +   
Sbjct: 15  RRGFVFPSSEIYGGLQGVFDWGPLGVELKNNIIASWWRTNVYERDDMEGLDAAILMNRLT 74

Query: 80  WVESGRYDSYGKEMLRLADRNDKA------------------------------------ 103
           W  SG  +++   ++   D   +                                     
Sbjct: 75  WRYSGHEETFNDPLVDCRDCKSRWRADHIKGRCPNCGSTNLTEPRPFNMMFKTAVGPVAD 134

Query: 104 -----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
                 +   T + +  +       S R LPF   Q+   FR+E+ PR  + R REF   
Sbjct: 135 ADSFAYLRPETAQGIFVNFGNVLATSSRKLPFGIAQVGKAFRNEINPRNFLFRVREFEQM 194

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
           +   F + P      + +     L  +  +G+    +R      +        + + +  
Sbjct: 195 EIEYFVM-PGTEDEWHQRWLEDRLVWWESIGIPRARIRIYDVPPDELAHYSKRTFDLMYH 253

Query: 214 ADT-GETQVFCSKDFMDFPIPSE---------------------NTDFDDIISLNSIVEQ 251
             T G  +V       D+ + S                         + D  S   +V  
Sbjct: 254 YPTLGYEEVEGIASRTDYDLGSHSRDQETLNLTARANPNRESTARLTYYDPESKRHVVPF 313

Query: 252 WT--------APYAATSDVHNEKLFDSLPENKRVSARG---------------------- 281
                        A  ++ ++E++  + P  +  +                         
Sbjct: 314 VIEPSAGVGRCFLAVLAESYDEQMVKAPPAERISAVSDALEAFLKSVGRSDKLAPETRDA 373

Query: 282 -IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            +E GH    G   ++P         G +            +R  A  +   H    +  
Sbjct: 374 LLERGHAILAGMPETMPQIEALLAMPGAEQVELGKK-----LRGQAQGLVDEHFRTVLHL 428

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDDMGEQIGSQFAVADLL 398
              +AP ++++  +K + +        +   + +VG      +DD G  IG  +   D +
Sbjct: 429 KSHLAPVRVAVFPLKRNHEGLVAMARDLRRSI-QVGSFFRTVYDDTGA-IGKLYRRQDEI 486

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P  V V  + + D  V +++R T  +  +   EV  Y S+
Sbjct: 487 GTPYCVTVDFQSLGDGTVTVRNRDTMQQIRIPASEVRAYVSN 528


>gi|229087427|ref|ZP_04219561.1| Glycyl-tRNA synthetase [Bacillus cereus Rock3-44]
 gi|228695849|gb|EEL48700.1| Glycyl-tRNA synthetase [Bacillus cereus Rock3-44]
          Length = 455

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/439 (11%), Positives = 130/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 28  WDYGPLGIELKNNVKKAWWKKFIQESPYNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 87

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 88  KCKARHRADKLIEDALDAKGIEMIVDGLTFDQMADLMKEHEVKCPDCGSQEFTEIRQFNL 147

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 148 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 207

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F      ++ +       ++ + L    E+  +
Sbjct: 208 FTFRTREFEQMELEFFCKPGEDLEWFTFWRNTCKNWLLA--LGMNEESMRLRDHGEEELS 265

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     K      E   V++R       F              +      + +  
Sbjct: 266 HYSNATTDIEFKFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 320

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 321 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 377

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 378 AGEVFAEL-AKDFVVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 435

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 436 EQVRMPISELKGFLEKKIQ 454


>gi|194332877|ref|YP_002014737.1| glycyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
 gi|194310695|gb|ACF45090.1| glycyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
          Length = 488

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 65/470 (13%), Positives = 137/470 (29%), Gaps = 65/470 (13%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAII-----REEQNRTGAIEMSVPTLQS 76
           R G I   S         + + PLG +   N+  +      R+ QN  G   +    + +
Sbjct: 28  RRGFIFPSSEIYGGLSSCFDYGPLGSEMKKNIKDLWWTSMTRKHQNIVG---IDASIMMN 84

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM--------TDIFRSHIKSYRN- 127
             +W  SG   S+   M+       +        E  +        TD  +    SY   
Sbjct: 85  PTVWEASGHVSSFNDPMIDDKT-TKRRYRADHLIENHIEKLRRDGKTDEAQRISSSYEQA 143

Query: 128 ---LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH------------ 172
                       +   +E++           + +    F                     
Sbjct: 144 ADAEDSNKAFYDIIIAEEIKAPDTGSSDWTEVRQFNLMFKCNMGALADSAGSVYLRPETA 203

Query: 173 ---SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                N   V            +   +A    I        +V  +  E Q F       
Sbjct: 204 QGIFVNFHNVRESNRMKVPFGIAQIGKAFRNEIVKGNFIFRMVEFEQMEMQYFVKPGTQK 263

Query: 230 FPIPSENTDFDDI---------ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
               +   +  +            L+       A YA  +     +    + E + + +R
Sbjct: 264 ETFEAWREERFNWYKERLGLTPGKLHWYKHDKLAHYADLAYDIKFEFPFGIEEIEGIHSR 323

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK---- 336
                       ++S         A  + +   +     GA R+  A++  ++       
Sbjct: 324 TDFDLKQHQ---EFSGKNMEYIDQATNERYIPYVVETSAGADRLFLALLCDAYTEDVIDG 380

Query: 337 ----GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                + +  ++AP K +++ +    +   +   K    L++    V +DD G  IG ++
Sbjct: 381 EERVMMKFSPTIAPVKAAVLPLMKKGE-MGEKASKFRNDLAEQ-FLVQYDDAG-SIGKRY 437

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              D +G P    V  + + D  V +++R T  ++ M + +V  + +   
Sbjct: 438 RRQDEIGTPFCFTVDHQTLEDDTVTVRYRDTAEQQRMEMSKVPEFLAAEI 487


>gi|209526080|ref|ZP_03274612.1| histidyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209493468|gb|EDZ93791.1| histidyl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 441

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/413 (15%), Positives = 116/413 (28%), Gaps = 25/413 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V ++  E   R    E+  P  +   L+        D  GKEM    DR D+++   
Sbjct: 37  WQWVASVAEETLARGNYQEIRTPIFEPTALFERGIGEATDVVGKEMYTFCDRGDRSITLR 96

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +              + +   FR E        R R+F            
Sbjct: 97  PEGTAGVVRAYIERKLFANPGVQRLWYMGPMFRYERPQAG---RQRQFHQLGVEVLGSDD 153

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT-----GETQVF 222
             +      + V  L+    LG+ ++ +   S     D  +    L D       E    
Sbjct: 154 PRADVEVIAVAVDILKS---LGVTNLHLNLNSVGDRTDRQNYRQALVDYLTPFQDELDQD 210

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--- 279
                   P+   ++  +    +              S  H E++   + E         
Sbjct: 211 SRDRLTRNPMRILDSKDERTQEITRDAPSILDYLGERSQSHFERVQYLIKELGISYTLNP 270

Query: 280 ---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F    S  + A      G  +   +   G G                
Sbjct: 271 RLVRGLDYYTHTAF-EIISDDLGAQATVCGGGRYDGLVQELG-GPEVPAVGWAIGLERLI 328

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            ++      P     + + +  +        +  +L + G  V  D  G   G QF  AD
Sbjct: 329 ILLQQLHQPPQVTPELYLVSRGEKAEANSLILAQKLRQAGLRVELDLSGSAFGKQFKRAD 388

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA----SHRFSNN 445
             G    +++G        V +K   +G +   +  ++I  A        +NN
Sbjct: 389 RSGAVACLVLGDAEAIAGTVNLKWLKSGEQTVFNQVDLIAKADQIKQQLIANN 441


>gi|110798964|ref|YP_696613.1| histidyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|123049701|sp|Q0TP27|SYH_CLOP1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|110673611|gb|ABG82598.1| histidyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
          Length = 415

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 121/415 (29%), Gaps = 12/415 (2%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        +   +R+     G  E+  P  ++ +L+        D   K
Sbjct: 4   QAQKGTKDMLPNDAYKWHYIEEKLRKISAEYGIREIRTPMFEATELFKRGVGETTDVVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P         F  +       P   +     FR E   +    R
Sbjct: 64  EMYTFEDKGGRSITLKPEGTAPAVRAFIENSLYADAQPTKMFYFTPCFRYEKMQKG---R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF       F             + +  L     +   S+ + +   P      +E +
Sbjct: 121 LREFHQYGIEVFGSQEASIDAEILSLVMRALTEDFGIKGLSLNINSLGCPKCRAKFNEAL 180

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---PYAATSDVHNEKLF 268
                      C      F                 IV++  +           H  KL 
Sbjct: 181 KQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSILDYICEECSDHFSKLK 240

Query: 269 DSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
             L            I  G  +Y  T + +          G+  Y+     G     +  
Sbjct: 241 AYLDVMGIEYNIDPQIVRGLDYYSKTVFEVIKDGLTVCGGGRYDYLVEEVDGPKTPAMGF 300

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +               +       + I +     +    K+   L K G     D +G+
Sbjct: 301 GLGLERLLLILDEEGIEIPEPVRCEVYIGSMGDNAKLEAMKLAFNLRKAGIKAEIDHLGK 360

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE--EVINYAS 439
            + +Q   A+ +G     ++G   + ++K++IK    G + ++SL+  E++N   
Sbjct: 361 SVKAQMKYANKIGAKYTFVIGDSEIEENKIKIKRMSDGEQFEVSLDINEIVNIVK 415


>gi|222478731|ref|YP_002564968.1| glycyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
 gi|222451633|gb|ACM55898.1| glycyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
          Length = 594

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 88/290 (30%), Gaps = 16/290 (5%)

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            DL     +         Y         +      E         ++     + G+    
Sbjct: 287 VDLDRFRFRQHLAGERAHYASDCWDAESEVDGDWIEIAGFSYRADYDLSKHDEYGDDAFT 346

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             K + +       T   D+  L        A  A   +   E+  D+            
Sbjct: 347 VFKRYDEPKTVERATVDPDMSVLGPEFGGDAAAVAEALETLAERDPDAFDSETVSVEVNG 406

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH--------D 334
           +   +    T  +     T    +G+     +     G  R V  ++  ++        +
Sbjct: 407 DDQTV---DTDVANFSVETVT-ENGEHLTPHVVEPSFGVGRTVQTLLAHAYSEDEVDGEE 462

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
              +     VAP   ++  +  +D    +  +++ A L + G  V +DD G  IG ++  
Sbjct: 463 RTYLSLEPEVAPQDAAVFPLVTNDDRLTELADRVAADLREAGVAVAYDDSG-SIGRRYRR 521

Query: 395 ADLLGFPLQVIVGSKFVS-DS--KVEIKHRLTGIREDMSLEEVINYASHR 441
            D +G P  V +    +  D    V ++ R + ++  +  EE+    +  
Sbjct: 522 QDEIGTPFCVTIDRDGIEGDGPETVTVRERDSAVQVRVPAEELATELTAL 571



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 24  KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQS 76
           +L  R G           + G Y++ P G     NV    R+    R G  E+  PT+  
Sbjct: 8   ELAKRRGFFFGSNGAYGGTAGFYTFGPQGAALKKNVEDAWRDRFTIREGNREIEAPTIMP 67

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKA 103
             ++  SG  + +   ++   +  +  
Sbjct: 68  EAVFEASGHLEGFDDMLVECPECGESH 94


>gi|156097506|ref|XP_001614786.1| prolyl-t-RNA synthase [Plasmodium vivax SaI-1]
 gi|148803660|gb|EDL45059.1| prolyl-t-RNA synthase, putative [Plasmodium vivax]
          Length = 476

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 139/409 (33%), Gaps = 46/409 (11%)

Query: 24  KLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES 83
           +L+ R   I     G+Y+ LPLG K+++ + + +     R  +  + +  LQ+   W  S
Sbjct: 24  ELLQRANYIRDV-NGLYNLLPLGYKSIEKIISFLNTHLKRVNSHCLFMSILQAKKWWNIS 82

Query: 84  GRYDSYGKE---------------------MLRLADRNDKAMIYGPTHEEVM--TDIFRS 120
            R   Y  E                     M +    +D  ++     E+ +   +   +
Sbjct: 83  DRSKLYSDEFLHVYKQKQQKGDSNKGTEAVMGKKKMEDDGLILSPTCEEQAISLINQVYN 142

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
                ++LP   +Q   KFR+E R    + +S+EFLMKD YSF         +Y      
Sbjct: 143 ENIPAKSLPLLIHQFNYKFRNEKRLEKTLFKSKEFLMKDGYSFHSNDICLSETYEAYKEC 202

Query: 181 YLRIFHRLGLKSIPMRAESGP-IGGDLSHEFIVLADTGETQVFCSKDFM-DFPIPSENTD 238
           Y ++F  L L     +      +    SHEF VL   G+ +       + D+        
Sbjct: 203 YEKVFSHLKLPFKVTKKRKMDKMNALESHEFQVLCRDGKYKEAAHIFKLGDYYSRKLGIK 262

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV-SARGIEVGHIFYFGTKYSLP 297
           + +  +  S +  +   Y          L DS  + + +     +    ++   T     
Sbjct: 263 YLNKRNEKSNI--FMGSYGIGIYRLLYFLVDSFYDGEGIRLPAQVAPFSVYLIQTNQRSK 320

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            SA      GK          + A+                   +S          + ++
Sbjct: 321 YSAAKVAKIGKLAQANEAVQAVEAV----------------QAVNSPNVPSAPTPPLNSN 364

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           D         +Y        D+++DD    +  +    DL+G P ++I+
Sbjct: 365 DVEYV-LTLWLYNSFKNSDVDIYYDDTDLHLSRKLKNCDLIGVPNRIII 412


>gi|226311476|ref|YP_002771370.1| histidyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|226094424|dbj|BAH42866.1| histidyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 424

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/412 (14%), Positives = 122/412 (29%), Gaps = 29/412 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRL-ADRNDKAMI 105
               V A  R+   R+   E+  P  +S +L+        D   KEM  +   R+  A+ 
Sbjct: 20  LWHYVEAKARDLCRRSNYAEIRTPLFESTELFQRGVGETTDIVEKEMYSVANPRSTDALT 79

Query: 106 YGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SF 163
             P     +   +  + +    N P   Y +   FR E        R R+F+   A    
Sbjct: 80  LRPEGTAGVVRSYVENKLYGVPNQPTKLYYLGPMFRHERPQAG---RYRQFVQFGAEAIG 136

Query: 164 DLTPEGSKHSYNKMFVSYLR--------------IFHRLGLKSIPMRAESGPIGGDLSHE 209
              P             Y                           + A    +  +L  +
Sbjct: 137 SSDPAIDAEVIGLAIRLYQELGLTGLSVELNSVGTVEDRARHREHLLAHLNGVRSELCED 196

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                D    +V       D    +      D  S+   + + +A +      +   L  
Sbjct: 197 CQSRIDRNPLRVL------DCKNETCKRLTMDAPSILDYLSEESAAHFEAVQNYLTALDI 250

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
               N R+  RG++   +  F  K +   +       G+ + +     G     +  A+ 
Sbjct: 251 PFHVNPRL-VRGLDYYTLTAFEIKMAEIGAVETLCGGGRYNGLVAELGGDDMPGIGFALS 309

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                         +         +       +     +  +L + G     D +  ++ 
Sbjct: 310 IERLLLALEKQGVQLPISGGIDCFVVVQTPEAKTTAFVLVDQLRQAGIAAELDYLDRKMK 369

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +Q   AD L      I+G   +++  V +K   TG ++++  EE++   + +
Sbjct: 370 AQLKQADRLQARFTAIIGESELTNGTVVLKEMATGEQQEVKREELVAVLAAK 421


>gi|291287346|ref|YP_003504162.1| histidyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884506|gb|ADD68206.1| histidyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
          Length = 420

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/409 (14%), Positives = 118/409 (28%), Gaps = 16/409 (3%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMI 105
           +    V  I +E        E  +P L+  +++     G  D   KEM    DR+   + 
Sbjct: 17  RYWQKVEKIFKETFKSFNYQEFYLPVLEKIEVFDRGIGGSTDIVEKEMFAFEDRDGTNVA 76

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P     +   +  +          +Y I   FR E   +    R R+F       F  
Sbjct: 77  LRPEGTASIVRAYVENKLYNPPATSKYYYIGPMFRRERPQKG---RFRQFTQAGIEVFGS 133

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
                      +  +           S+ + +   P      +E ++       +  C  
Sbjct: 134 AGPAVDADVVNVLYTLACNLGIEEFVSMEINSIGCPECRPAYNEKLIAYLNDNKEGLCED 193

Query: 226 DF---MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKR 276
                   P+   +   D   ++               + H   + + L           
Sbjct: 194 CLRRLNKNPMRILDCKNDGCKAITKNAPVALDHLCGECEEHFNGVRNYLDTLGVPYNVNP 253

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           +  RG++      F    +   S +  GA G+   +     G     +            
Sbjct: 254 MMVRGLDYYVRTAFELVTNKLGSQSAVGAGGRYDGLIQLLGGPDTPGI--GFATGIDRMV 311

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            +               + +   +      K+   +   G     D    ++  QF++AD
Sbjct: 312 ALAMLKETEKENEIDAFVVSFKDISDKKALKMVNDMRSAGISADMDYDFRKMKKQFSLAD 371

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             G    VI+G   ++     +K   TG +ED+ LE+ I Y S +   N
Sbjct: 372 KNGARFTVILGEDEMNKGTAAVKDMETGGQEDVMLEKTIEYISDKLRRN 420


>gi|148642463|ref|YP_001272976.1| glycyl-tRNA synthetase [Methanobrevibacter smithii ATCC 35061]
 gi|261349423|ref|ZP_05974840.1| glycine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
 gi|148551480|gb|ABQ86608.1| glycyl-tRNA synthetase [Methanobrevibacter smithii ATCC 35061]
 gi|288861785|gb|EFC94083.1| glycine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
          Length = 564

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 99/250 (39%), Gaps = 14/250 (5%)

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E I +AD G+  +     + +  +       +      ++V+   + +       + 
Sbjct: 317 GWVEIIGIADRGDYDLTSHSKYSNDDLNVFIEYDEPKTVKKTVVKPNLSKFGPIFKGDSP 376

Query: 266 KLFDSLPE---NKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-----DGKDHYVQMGSY 317
           K+  ++ E   ++   A   +  ++      Y L               G+     +   
Sbjct: 377 KVKQAIEEADVDEIKQAIENDGKYVVSLDKDYELTSDLLLFEDVEEEISGEKIVPHVIEP 436

Query: 318 GIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             G  R+V +V+  S           +  SVAP ++ +  +    +  R+   +I  +L 
Sbjct: 437 SFGIDRIVYSVLLHSFKETDTKDYFKFAPSVAPVQVGIYPLVNK-EGPREIAIEITDKLR 495

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G  V +D  G  IG ++A AD +G PL + V    + D+KV +++R +  +E ++++E
Sbjct: 496 ESGFKVEYDVSG-TIGKRYARADEIGIPLAITVDFDSLEDNKVTVRNRDSEAQERIAIDE 554

Query: 434 VINYASHRFS 443
           + +Y    + 
Sbjct: 555 IKDYLEEYYK 564



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G   + PLG    +N+    R++     G  E+  PT+   ++   SG  D++   M +
Sbjct: 27  SGFTDYGPLGASLKNNIMQKWRKQYVSGEGFYEIEGPTVMPKEVLKASGHVDNFTDPMTK 86

Query: 96  LADRND 101
             +  +
Sbjct: 87  CEECGE 92


>gi|229032557|ref|ZP_04188522.1| Glycyl-tRNA synthetase [Bacillus cereus AH1271]
 gi|228728742|gb|EEL79753.1| Glycyl-tRNA synthetase [Bacillus cereus AH1271]
          Length = 487

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/439 (11%), Positives = 131/439 (29%), Gaps = 47/439 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     + +    L +   W+ SG   ++   M+   
Sbjct: 60  WDYGPLGIELKNNVKKAWWKKFIQESPYNVGLDAAILMNPKTWIASGHVGNFNDPMIDCK 119

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             + + +            R+F +
Sbjct: 120 KCKARHRADKLIEDALDAKGIEMVVDGLTFDQMADLMKEHEVKCPDCGSEEFTEIRQFNL 179

Query: 158 KDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLKSIP 194
                  +T   +   + +          F +  R                 R  +    
Sbjct: 180 MFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKKLPFGIGQIGKSFRNEITPGN 239

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   F  +   ++ +       ++ + L    E+  +
Sbjct: 240 FTFRTREFEQMELEFFCKPGEDLEWFAFWRETCKNWLL--SLGMTEESMRLRDHGEEELS 297

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGAD-GKDHYV 312
            Y+  +     +      E   V++R       F              +      + +  
Sbjct: 298 HYSNATTDIEFRFPFGWGELWGVASR-----TDFDLKRHMEHSNEDFNYIDPQTNERYVP 352

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
                 +GA RV  A +  +++ + +         +  ++AP+K +++ +        + 
Sbjct: 353 YCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPALAPYKAAILPLSKK---LSEG 409

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             +++A L      V +D+ G  IG ++   D +G P  +      V D  V ++ R T 
Sbjct: 410 ATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDSVEDKAVTVRDRDTM 467

Query: 425 IREDMSLEEVINYASHRFS 443
            +  M + E+  +   +  
Sbjct: 468 EQVRMPISELKGFLEKKIQ 486


>gi|256419457|ref|YP_003120110.1| glycyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
 gi|256034365|gb|ACU57909.1| glycyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
          Length = 476

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/463 (11%), Positives = 123/463 (26%), Gaps = 53/463 (11%)

Query: 30  GMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWV 81
           G + Q S        +Y +   G +   N+     +   +     + +         +W 
Sbjct: 19  GFVFQSSEIYDGLSAVYDYGQNGAQLKKNIRDYWWKSMTQMHENIVGIDSAIFMHPTIWK 78

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            SG  D +   M+   D   +  +         T    +       +        L    
Sbjct: 79  ASGHVDGFSDPMIDNKDSKKRYRVDHLIEAHAETLPEGNGDVLISKMNELLAADDLAGLK 138

Query: 142 ELRPRFGVMR---------------------SREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            L   + +                             + +  +           N + V 
Sbjct: 139 TLIETYNIQCAVSKTANWTDVRQFNLMFSTQLGSVTDEASEIYLRPETAQGIFVNFLNVQ 198

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF--------CSKDFMDFPI 232
                      +   +A    I        +   +  E Q F            + +  +
Sbjct: 199 KTGRMKIPFGIAQVGKAFRNEIVARQFIFRMREFEQMEMQFFVRPGTQKEWFAYWKEERL 258

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
               +   D       V    A YA  ++    +      E + + +R     H      
Sbjct: 259 KWHKSLGIDPDKYRFHVHDKLAFYADAAEDIEYEFPIGFKEVEGIHSRT---DHDLSRHQ 315

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-----------DGKGIIWP 341
           ++S      F     +++   +    IG  R+    I  ++           D + ++  
Sbjct: 316 EFSRKKMQYFDTEINQNYIPYVIETSIGLDRMFLLTICDAYVEEDLTKDGKEDSRVVMKL 375

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            +        I          +  +++  +        F+++    IG ++   D +G P
Sbjct: 376 PAKLAPVKLAIFPLTKKDGLPEIGKELMDKCKSA-FHCFYEEKDA-IGRRYRRQDAIGTP 433

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             V +  +   D  V I++R    +E + +++V     ++ + 
Sbjct: 434 FCVTIDHQTKEDGTVTIRYRDNMEQERIPMDKVKELVLNKINE 476


>gi|170290849|ref|YP_001737665.1| glycyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174929|gb|ACB07982.1| glycyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 508

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 118/322 (36%), Gaps = 10/322 (3%)

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            LPF   Q+   FR+E+ PR  ++R REF   +   F   PE     Y +    +L    
Sbjct: 188 KLPFALGQVGRVFRNEISPRRALIRMREFQQLEVQIF-FDPENPDELYREKLEPFLDYKL 246

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           R   +      ESG I    + E ++   T  + +                   + +   
Sbjct: 247 RFLRREDR---ESGRIVEIPAREALMSGYTVNSLITYWLVAYQRFFNETLGFPLERLRYR 303

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA-RGIEVGHIFYFGTKYSLPMSATFKGA 305
            +VE   A Y+       E   + L   + V+     +     +          A  +  
Sbjct: 304 ELVEGEKAHYSL-VHWDLEVYTEDLGWIELVNNAYRTDYDLSGHMRVSGIDLRIAIPESD 362

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW--PDSVAPFKISLINIKAHDQVCRD 363
                ++   S G+  + +   ++    D + +    P S+AP ++ +  +   D+    
Sbjct: 363 RKLLPHMYEPSIGVDRVILHELMLAYREDEERVWLQLPRSIAPIEVGVFPLLKRDE-LPS 421

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +IY  L   G   F+DD G  IG ++   D +G PL V +  + + D  V ++ R T
Sbjct: 422 KAREIYHELINEGIIAFYDDSG-TIGRRYRRMDEIGTPLCVTIDYQTLEDDTVTLRDRDT 480

Query: 424 GIREDMSLEEVINYASHRFSNN 445
            ++  +  EE+        +++
Sbjct: 481 MMQVRVRREELPTKVRKFLNSD 502



 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 18/92 (19%)

Query: 6  YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRT 64
          +F P  +E   DA                   G Y++ PLG +  + +  + R E   + 
Sbjct: 17 FFWPSSKEVYSDA-----------------PAGFYTYGPLGVRMKEKIIGLWRREIVIKE 59

Query: 65 GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
          G  E+  P +    ++  SG  + +  +++  
Sbjct: 60 GVNEIETPNVLPIKVFEASGHLEHFFDKLIEC 91


>gi|182624433|ref|ZP_02952217.1| histidyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|177910436|gb|EDT72813.1| histidyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
          Length = 415

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 121/415 (29%), Gaps = 12/415 (2%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        +   +R+     G  E+  P  ++ +L+        D   K
Sbjct: 4   QAQKGTKDMLPNDAYKWHYIEEKLRKISAEYGIREIRTPMFEATELFKRGVGETTDVVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P         F  +       P   +     FR E   +    R
Sbjct: 64  EMYTFEDKGGRSITLKPEGTAPAVRAFIENSLYADAQPTKMFYFTPCFRYEKMQKG---R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF       F             + +  L     +   S+ + +   P      +E +
Sbjct: 121 LREFHQYGIEVFGSQEASIDAEILSLVMRALTEDFGIKGLSLNINSLGCPKCRAKFNEAL 180

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---PYAATSDVHNEKLF 268
                      C      F                 IV++  +           H  KL 
Sbjct: 181 KQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSILDYICEECSDHFSKLK 240

Query: 269 DSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
             L            I  G  +Y  T + +          G+  Y+     G     +  
Sbjct: 241 AYLDVMGIEYNIDSQIVRGLDYYSKTVFEVIKDGLTVCGGGRYDYLVEEVDGPKTPAMGF 300

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +               +       + I +     +    K+   L K G     D +G+
Sbjct: 301 GLGLERLLLILDEEGIEIPEPIRCEVYIGSMGDNAKLEAMKLAFNLRKAGIKAEIDHLGK 360

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE--EVINYAS 439
            + +Q   A+ +G     ++G   + ++K++IK    G + ++SL+  E++N   
Sbjct: 361 SVKAQMKYANKIGAKYTFVIGDSEIEENKIKIKRMSDGEQFEVSLDINEIVNIVK 415


>gi|329297581|ref|ZP_08254917.1| histidyl-tRNA synthetase [Plautia stali symbiont]
          Length = 424

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/422 (14%), Positives = 123/422 (29%), Gaps = 23/422 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTAIWQRIEGTLKQVLASYGYSEIRLPIVEQTPLFSRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF---RDELRPRFGVMRS 152
             DRN +++   P            H   Y      +Y   +       + R R      
Sbjct: 70  FEDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRYERPQKGRYRQFHQMG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D       H + K            + +G         S  +     HE
Sbjct: 130 VEVFGLQGPDVDAELIMLTHRWWKALGIADHVELELNSIGSLDARANYRSALVAFLEQHE 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-----NSIVEQWTAPYAATSDVHN 264
            ++  D            +D   P   T  +D  +L         E ++   A   D   
Sbjct: 190 EVLDEDCKRRMYTNPLRVLDSKNPDIQTLLNDGPTLGEFLDEESREHFSGLCALLDDAGI 249

Query: 265 E-KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           + ++   L        R +        G++ ++     +     +       + G     
Sbjct: 250 KYRINQRLVRGLDYYNRTVFEWVTSSLGSQGTVCGGGRYDSLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFW 381
               ++                P +I  + + A  Q  + A  ++  +L        +  
Sbjct: 310 ERLVLLV-------QAVNPEFEPTRIVDVYVIASGQGVQSAAMQLAEKLRDADPALKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + +++G   V   +V IK   TG ++ ++  +        
Sbjct: 363 NFGGGNFKKQFARADKWGARIALVLGEDEVKAGQVVIKDLRTGDQQTLAQSDAAATLHTL 422

Query: 442 FS 443
             
Sbjct: 423 LQ 424


>gi|167037448|ref|YP_001665026.1| histidyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115862|ref|YP_004186021.1| histidyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|229558738|sp|B0K977|SYH_THEP3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166856282|gb|ABY94690.1| histidyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319928953|gb|ADV79638.1| histidyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 418

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/404 (12%), Positives = 124/404 (30%), Gaps = 19/404 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  +IRE  +  G  E+  P  +  +L++       D   KEM    D+  +++   
Sbjct: 20  WQYIEGLIREICDVYGFKEIRTPGFEHTELFLRGVGESTDIVRKEMYTFTDKGGRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F  H       P   Y I   +R E      +    +F ++   +   + 
Sbjct: 80  PEGTSPAVRAFIEHNLYAETQPTKLYYITPVYRYERPQSGRLREHHQFGVEIFGAKSASA 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +    S     +  L + +     +             +  EF+        +  C    
Sbjct: 140 DAEVISVAMTLLKKLGLNNLELRINSVGCPVCRKNYNKVLKEFL----KNNLEYLCDDCK 195

Query: 228 MDFPIPSENTDFDDIISL-----------NSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           + + I         + S            + + +   + +       +   +D + + + 
Sbjct: 196 VRYEINPLRVLDCKVESCQRITKDAPLITDYLCDDCKSHFEELQKYLDIMGYDYIIDPRI 255

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V  RG++      F        +       G+   +     G     V   +        
Sbjct: 256 V--RGLDYYTKTAFEIISKDIGAQGTVCGGGRYDGLIEECGGPSMPGVGFGMGLERLLIT 313

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                  +   +   + I    +  +     +  +L   G  V  D+M   + +Q   A+
Sbjct: 314 LEQNGIEIPKPEGVDLFIAYVGEEAKLFTFALANKLRFNGLKVERDNMDRSLKAQMKYAN 373

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            L     +++G + + ++KV++K    G   ++S++E+     +
Sbjct: 374 KLNAKFAIVIGEEEMKENKVKLKDMRVGSEVEISIDEIEQRIKN 417


>gi|255732025|ref|XP_002550936.1| threonyl-tRNA synthetase [Candida tropicalis MYA-3404]
 gi|240131222|gb|EER30782.1| threonyl-tRNA synthetase [Candida tropicalis MYA-3404]
          Length = 1059

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 2/95 (2%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            +++   + +   RD      +  L      + S G   WLP G +  + +   +REE  
Sbjct: 295 MTEHLKFLAEAAERDHRKIGKEQELF--FFSEMSPGSAMWLPHGTRIYNTLVETLREEYR 352

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + G  E+  P + S  LW  SG + +Y + M    
Sbjct: 353 KRGYDEVITPNMYSTKLWETSGHWQNYKENMFSFE 387



 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 109/346 (31%), Gaps = 43/346 (12%)

Query: 109  THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTP 167
             +      +F+S  +SYR+LP+      +  R+E      G+ R R F   DA+ F    
Sbjct: 743  GNCPGHAVMFKSRERSYRDLPWRVADFGVIHRNEFSGALSGLTRVRRFQQDDAHIFCTAD 802

Query: 168  EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            +        +F                       + G    EF +   T   +     + 
Sbjct: 803  QIGTE-IAGVFDLLK------------------KMYGIFGFEFKMELSTRPEKYVGDLET 843

Query: 228  MDFPIPSENTDFDDI--ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
             +          D+        +     A Y    D+    + D+L    + +   ++  
Sbjct: 844  WNGAEQKLEQALDEFLGKGKWELNPGDGAFYGPKIDIM---ISDALKRWFQCATIQLD-- 898

Query: 286  HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
              F    ++ L               V +    +G++  + A++    +     WP  ++
Sbjct: 899  --FQLPHRFELEYK---TDKGPTSRPVMIHRAILGSVERMTAILT---EHYKGKWPFWLS 950

Query: 346  PFKISLINIKAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQV 404
            P +I ++ +        D  + +  RL+         D  G  +  +     +  +    
Sbjct: 951  PRQILIVPVGPK---YYDYAQTLQKRLNDEHSFYCDVDVSGNTLPKKIRTGQMYKYNFIF 1007

Query: 405  IVGSKFVSDSKVEIKHRL----TGIREDMSLEEVINYASHRFSNNR 446
            IVG +    + V +++R      G    + +++VI        + R
Sbjct: 1008 IVGDEEEKSNSVNVRNRDIPEEQGKNAMVKVDDVIQQLLDLKQSKR 1053


>gi|323491632|ref|ZP_08096811.1| histidyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
 gi|323314208|gb|EGA67293.1| histidyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
          Length = 412

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/411 (15%), Positives = 122/411 (29%), Gaps = 14/411 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        +   ++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 5   LPTQSPLWQKLENTVKNVISAYGYNEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSH---IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             ++   P            +    +S + L +     + +   + R R       E   
Sbjct: 65  GDSLTLRPEGTAGCVRSCIENSLIDRSEQRLWYMGPMFRHERPQKGRYRQFHQCGVEVFG 124

Query: 158 KDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            D    D           +            + +G         +  I     H  I+  
Sbjct: 125 LDGPDVDAELIMMTARLWRELGIDKHVRLELNSIGSLEDRANYRTALIAFLEQHIDILDD 184

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPE 273
           D            +D   P       D   L+  + E+    +A   ++ +    +    
Sbjct: 185 DCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSDYLGEESKQHFAGLCELLDAAGIEYSVN 244

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            + V         +F +    +  + A      G  +   +   G  A   V   +    
Sbjct: 245 QRLVRGLDYYNRTVFEW---ITESLGAQGTVCGGGRYDGLVEQLGGKATPAVGFAMGLER 301

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGSQ 391
               +   +     +   + +    +    A  K+   L +   G  V     G     Q
Sbjct: 302 LVLMLETLELTEVRRSVDVYMVTAGEGTMLAGMKLAETLREQVPGLRVMSHFGGGNFKKQ 361

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           F  AD +G  + +++G   V+D+ V +K  + G +E  S  +VI   S   
Sbjct: 362 FKRADKVGAAVALVLGENEVADNTVVLKDLIGGTQETYSQADVIAKLSELV 412


>gi|154151276|ref|YP_001404894.1| histidyl-tRNA synthetase [Candidatus Methanoregula boonei 6A8]
 gi|166228579|sp|A7I940|SYH_METB6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|153999828|gb|ABS56251.1| histidyl-tRNA synthetase [Methanoregula boonei 6A8]
          Length = 410

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/416 (14%), Positives = 119/416 (28%), Gaps = 18/416 (4%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           MI +   G   +LP   +A  ++ A +RE   R G  E+  P  +  +L+   SG  +  
Sbjct: 1   MIQKPR-GTRDFLPDEMEARRSIEAKMREAVRRFGYREVCTPEFEELELFTLRSG--EGI 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            +EM    D+  + +   P     +  ++ +  K     P  +      FR E   +   
Sbjct: 58  MQEMYVFEDKGGRKLALRPEITAAVIRMYINEAKVAPK-PLRWCYFADCFRYERPQKG-- 114

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD---- 205
            R R+F    A         +      +    L          +   A    +  D    
Sbjct: 115 -RYRQFWQFGAELIGADTALADAEVIMLAAEALNATGVTWELKVGHLAFMKNLLADLDPA 173

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                +   D  + +    +          N     ++   ++ E +            E
Sbjct: 174 AQRRVMAHLDKKDFEGLA-ETLAGMRKSGLNDSLTALVECRTLAEAFEIAGTIPEKERVE 232

Query: 266 KLFDSLPENKRVS--ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           +    L  +        GI  G  +Y G  +                     ++  G   
Sbjct: 233 QTMGILDASGVRYSLNFGIARGLDYYTGMVFEGFAENLGAENQILGGGAYRLAHLFGGDD 292

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           V +       D   +   +  A        +       R     +       G     D 
Sbjct: 293 VASCGFAIGFDRVMVSLGEVFAAKDTIAGIVCT--DEGRSFALSVAREFRAAGIRAEMDL 350

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           MG  +G+Q A A        V++G +     +V +K+  +G ++ +     I    
Sbjct: 351 MGRGLGAQLAHASKT-ADFAVVIGKREADAGQVTLKNLHSGEQKTLDPAAAIAEVK 405


>gi|15669189|ref|NP_247994.1| histidyl-tRNA synthetase [Methanocaldococcus jannaschii DSM 2661]
 gi|2501004|sp|Q58406|SYH_METJA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|1591660|gb|AAB99003.1| histidyl-tRNA synthetase (hisS) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 416

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 69/418 (16%), Positives = 129/418 (30%), Gaps = 29/418 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL-WVESGRYDSYGKEMLRL 96
           G   +LP   K    V   +RE   R G  E+  PT +S +L   ++G  +   K++   
Sbjct: 10  GTRDFLPEEMKKRRFVENKLREVFERYGYKEILTPTFESFELIAKKTG--EEIRKQLYVF 67

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   + M   P     +   + + +K+    P   Y     FR E        R REF 
Sbjct: 68  KDHGGREMALRPEMTSPVVRFYLNELKN-LQKPLRLYYFANCFRYERPQAG---RFREFW 123

Query: 157 MKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM---RAESGPIGGDLSHEF-- 210
                      P       N      + I     +    +   +            E   
Sbjct: 124 QMGCELIGCKEPLADAEVLNLAMDGLINIGLDFDVHIGHLGVLKGVLEKFNVSEEEEVKI 183

Query: 211 --IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-----PYAATSDVH 263
             ++  +  +         +         +         ++++        P +  +  +
Sbjct: 184 RRLIDKEDYDNLKIYLTQILGEEKKELIFEILKFKGSREVLDELKEILKDFPKSMEAINN 243

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E++ + +  +K     GI  G  +Y G  +                         G   
Sbjct: 244 LEEILEFVIHDKYTINLGIARGLDYYTGMVF-EIYGKKGAKQICGGGRYDNLIETFGGEP 302

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
             A       D   +   D     +  LI     D+        I  +L K G  V    
Sbjct: 303 TPAVGFAYGFDRIMMNIDDLDIEEESILIIPVKKDKELIKKSLIIADKLRKAGKIVEL-- 360

Query: 384 MGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
             E +G +   A    +  GF   +IVG K +++ KV +K  +TG ++ + ++E+ N+
Sbjct: 361 --EIMGRKLRKALDYANSRGFKKVIIVGEKELNEGKVTVKDMITGEQKLIGIDELTNF 416


>gi|239941025|ref|ZP_04692962.1| glycyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|239987504|ref|ZP_04708168.1| glycyl-tRNA synthetase [Streptomyces roseosporus NRRL 11379]
 gi|291444465|ref|ZP_06583855.1| glycyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|291347412|gb|EFE74316.1| glycyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
          Length = 460

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/434 (13%), Positives = 132/434 (30%), Gaps = 40/434 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+           R   + +    + + ++WV SG   ++   +    
Sbjct: 33  WDYGPLGVEMKENLKRQWWRYMVTAREDVVGLDSSVILAPEVWVASGHVATFSDPLTECT 92

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +        EE   +       +                 E +   G++ +     
Sbjct: 93  SCHKR--YRADHLEEAYEEKHGKSPVNGLADLNCPNCGNKGTFTEPKQFSGLLSTHLGPT 150

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRAESGPIG 203
           +D+ S       +       F   L+                 R  +        +    
Sbjct: 151 QDSGSVAYLRPETAQGIFTNFGQVLQTSRKKPPFGIAQMGKSFRNEITPGNFIFRTREFE 210

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                 F+   +  E Q +      ++         +++       E+ +     T+D+ 
Sbjct: 211 QMEMEFFVKPGEDEEWQQYWMDQRWNWYT-DLGMREENMRWYEHPKEKLSHYSKRTADIE 269

Query: 264 NEKLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIG 320
               F      E + V+ R              +      +      +     +     G
Sbjct: 270 YRFRFGGSEWGELEGVANRTDYDLKAHS----EASGTDLRYHDQEAQERWTPYVIEPAAG 325

Query: 321 AMRVVAAVIESSH------DGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKI 368
             R + A +  ++      + KG++   +V      L  +K      + +       + +
Sbjct: 326 VGRAMLAFLLDAYVEDEAPNAKGVMEKRTVMRLDPRLAPVKVAVLPLSRNAQLSPKAKGL 385

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            A L K   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R T  +E 
Sbjct: 386 AADLRKNW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVTVRERDTMKQER 443

Query: 429 MSLEEVINYASHRF 442
           +SL+++  Y   R 
Sbjct: 444 VSLDQIQAYLGARL 457


>gi|317049135|ref|YP_004116783.1| histidyl-tRNA synthetase [Pantoea sp. At-9b]
 gi|316950752|gb|ADU70227.1| histidyl-tRNA synthetase [Pantoea sp. At-9b]
          Length = 424

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/423 (14%), Positives = 126/423 (29%), Gaps = 25/423 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTAIWQRIEGTLKQVLASYGYSEIRLPIVEQTPLFSRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMR 151
             DRN +++   P            H   Y      +Y +   FR E       R     
Sbjct: 70  FEDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWY-MGPMFRYERPQKGRYRQFHQM 128

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             E         D         + K            + +G            +     H
Sbjct: 129 GAEVFGLQGPDVDAELIMMTARWWKALGIADHVELELNSIGSLEARANYRDALVAFLEQH 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKL 267
           + ++  D            +D   P      +D  +L   +++ + A ++    + ++  
Sbjct: 189 KDVLDEDCKRRMYTNPLRVLDSKNPDVQQLLNDAPTLGDFLDEDSRAHFSGLCALLDDAG 248

Query: 268 FDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                  + V         +F       G++ ++     + G   +       + G    
Sbjct: 249 IQYRINQRLVRGLDYYNRTVFEWVTSALGSQGTVCGGGRYDGLVEQLGGRPTPAVGFAMG 308

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVF 380
                ++                P +I  + + A  Q  + A  ++  +L        + 
Sbjct: 309 MERLVLLV-------QAVNPEFEPTRIVDVYVIASGQGVQSAAMQLAEKLRDADPQLKLM 361

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +  G     QFA AD  G  + +++G   V+  +V IK   TG ++ ++  E       
Sbjct: 362 TNFGGGNFKKQFARADKWGARIALVLGEDEVATGQVVIKDLRTGDQQTLAQSEAAATLRT 421

Query: 441 RFS 443
              
Sbjct: 422 LLQ 424


>gi|189345581|ref|YP_001942110.1| glycyl-tRNA synthetase [Chlorobium limicola DSM 245]
 gi|189339728|gb|ACD89131.1| glycyl-tRNA synthetase [Chlorobium limicola DSM 245]
          Length = 489

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 67/474 (14%), Positives = 131/474 (27%), Gaps = 55/474 (11%)

Query: 18  AEIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM-- 69
            ++ S  L  R G I   S         + + PLG +   N+  +      R  A  +  
Sbjct: 21  HKLVS--LAKRRGFIFPSSEIYGGLSSCFDYGPLGSEMKKNIKELWWNSMTRRHANIVGI 78

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
               + +  +W  SG   S+   M+       +        E  +  + R     +    
Sbjct: 79  DASIMMNPTVWEASGHVASFNDPMIDDRT-TKRRYRADHLIENHIEKLRRDGKTDHAEAV 137

Query: 130 FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF---------VS 180
            + Y+      D  R  + ++        D  S D T     +   +           + 
Sbjct: 138 QSAYEAVAGAPDSNRALYDLITGEAIKAPDTGSGDWTEVRQFNLMFQCNMGAVADTSGIV 197

Query: 181 YLRIFHRLGLKSIPM------------------RAESGPIGGDLSHEFIVLADTGETQVF 222
           YLR     G+                       +A    I        +V  +  E Q F
Sbjct: 198 YLRPETAQGIFVNFHNVREASRMKVPFGIAQIGKAFRNEIVKGNFIFRMVEFEQMEMQYF 257

Query: 223 CS--KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                    F    E      +  L    E+    Y      H   L   +         
Sbjct: 258 VKPGSQIEAFEAWREERFNWYVTELGITQEKL-HWYKHDKLAHYADLAYDIKFEFPFGTE 316

Query: 281 GIEVGHI---FYF-GTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            IE  H    F     +     +  +      + +   +     G  R+  A++  +++ 
Sbjct: 317 EIEGIHSRTDFDLSQHQQYSGKNMEYIDQTTNERYIPYVVETSSGCDRLFLALLSDAYNE 376

Query: 336 KGIIWPDSVAPFKISLINIKA-------HDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
             +     V       +                 +  E   + LS     V +DD    I
Sbjct: 377 DVVDGEPRVMLKLSPKVAPVKAAVLPLVKKGEMGEKAELFRSELSTA-FMVQYDD-AASI 434

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G ++   D +G P    V  + + D  V +++R +  +E + +     + + + 
Sbjct: 435 GKRYRRQDEIGTPFCFTVDHQTLEDQTVTVRYRDSATQERIDMSRAKEFLATKI 488


>gi|168204883|ref|ZP_02630888.1| histidyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|170663595|gb|EDT16278.1| histidyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
          Length = 415

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 121/415 (29%), Gaps = 12/415 (2%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        +   +R+     G  E+  P  ++ +L+        D   K
Sbjct: 4   QAQKGTKDMLPNDAYKWHYIEEKLRKISAEYGIREIRTPMFEATELFKRGVGETTDVVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P         F  +       P   +     FR E   +    R
Sbjct: 64  EMYTFEDKGGRSITLKPEGTAPAVRAFIENSLYADAQPTKMFYFTPCFRYEKMQKG---R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF       F             + +  L     +   S+ + +   P      +E +
Sbjct: 121 LREFHQYGIEVFGSQEASIDAEILSLVMRALTEDFGIKGLSLNINSLGCPKCRAKFNEAL 180

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---PYAATSDVHNEKLF 268
                      C      F                 IV++  +           H  KL 
Sbjct: 181 KQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSILDYICEECSDHFSKLK 240

Query: 269 DSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
             L            I  G  +Y  T + +          G+  Y+     G     +  
Sbjct: 241 AYLDVMGIEYNIDPQIVRGLDYYSKTVFEVIKDGLTVCGGGRYDYLVEEVDGPKTPAMGF 300

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +               +       + I +     +    K+   L K G     D +G+
Sbjct: 301 GLGLERLLLILDEEGIEIPEPVRCEVYIGSMGDNAKLEAMKLAFNLRKAGIKAEIDHLGK 360

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE--EVINYAS 439
            + +Q   A+ +G     ++G   + ++K++IK    G + ++SL+  E++N   
Sbjct: 361 SVKAQMKYANKIGAKYTFVIGDSEIEENKIKIKRMSDGEQFEISLDINEIVNIVK 415


>gi|323142308|ref|ZP_08077140.1| histidine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322413192|gb|EFY04079.1| histidine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 419

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/409 (13%), Positives = 122/409 (29%), Gaps = 26/409 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   +R+   + G  E+  P  +  +L+        D   KEM    DR ++++   
Sbjct: 20  WRYLEETMRKICAQYGYKEIRTPVFEHTELFQRGIGDTTDVVEKEMYTFTDRGNRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P +       +  H  S  +    FY I   FR +        R REF      +  +T 
Sbjct: 80  PENTASAVRAYVEHKLSKDDAATKFYYIGPMFRYDRPQAG---RLREFHQFGVEALGVTG 136

Query: 168 EGSKHSYNKMFVSYLR---------------IFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
                    + V  L+                          ++A   P   +L  +   
Sbjct: 137 PNVDAEIILLAVQVLQSLGLKDLKLKINSVGCPKCRPQHREKLQAFFKPNFDELCKDCQG 196

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             D    ++   K+     +       ++ +               T+     ++  +L 
Sbjct: 197 RFDRNPLRLLDCKNPHCHELGEGAPSLEECLCDECKEHFEGLKQLLTAAGVEYEVDHNLV 256

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  +          G + ++     +     ++        GIG    +  V+ + 
Sbjct: 257 RGLDYYTKTAFEIQYAPLGAQSAVCGGGRY-DGLVQEISGDEARPGIGFAMGMERVLLAL 315

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                +   D      +         Q       K    L + G  V +D  G  + SQ 
Sbjct: 316 EKQNLLPEFDESIDAYVVCP-----KQENFALAFKTAIELRRAGFKVEYDFNGRSMKSQM 370

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             A+       +I G   +S + V +++  T  + ++++ ++I+Y +  
Sbjct: 371 KQANKFQAKQVLIFGEDELSRNAVTVRNMATSEQHEIAVNDIISYFNTL 419


>gi|150401716|ref|YP_001325482.1| glycyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
 gi|150014419|gb|ABR56870.1| glycyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
          Length = 579

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 94/283 (33%), Gaps = 25/283 (8%)

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
              Y            R G       A+          E                 F+++
Sbjct: 311 MAHYAIDCWDAEIYTDRFGWIECVGIADRTDFDLKAHME---------NSGVDLSIFVEY 361

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-------KLFDSLPENKRVSARGIE 283
             P E   ++  ++   + + +       SD  NE       KL +++   +    +  +
Sbjct: 362 DEPKEIETYEIELNYKVVGKVFKKDMKLVSDALNELDNNEMEKLVNTIKNGEEYILKVGD 421

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH----DGKGII 339
                      +  +     G     H ++      G  R+   ++E S     D   + 
Sbjct: 422 KEFTILEDYLTAKKVQKKVMGEKVLPHVIEPSH---GIDRITFCLLEHSFNEEEDRTYLS 478

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
              +V+P K+ +  +    Q   +    I   L K G    +DD G  IG ++   D +G
Sbjct: 479 INPTVSPIKVGVFPLVNK-QGMPEIAMDIKNNLRKNGILAEYDDSGA-IGRRYMRMDEVG 536

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            P  + V  + + D+ + I+ R +  +  + +EEV++Y  ++ 
Sbjct: 537 APFCITVDGQTLEDNTITIRERDSREQIRIKIEEVVDYIKNKL 579



 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 1/108 (0%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G   + PLG    +N+    R+         E+  PT+   D+   SG  D++   M+ 
Sbjct: 34  AGFVDYAPLGAMLKNNIIDTWRKHYITNEEFYEIDCPTITPHDVLKASGHVDNFTDPMIE 93

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
             +  +         E +  D     ++  + L  T      K   + 
Sbjct: 94  CKECLESYRADHIIEENIDIDTEGKTLEELQQLMETHKITCPKCSGQF 141


>gi|168215559|ref|ZP_02641184.1| histidyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
 gi|182382324|gb|EDT79803.1| histidyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
          Length = 415

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 65/415 (15%), Positives = 121/415 (29%), Gaps = 12/415 (2%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        +   +R+     G  E+  P  ++ +L+        D   K
Sbjct: 4   QAQKGTKDMLPNDAYKWHYIEEKLRKISAEYGIREIRTPMFEATELFKRGVGETTDVVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P         F  +       P   +     FR E   +    R
Sbjct: 64  EMYTFEDKGGRSITLKPEGTAPAVRAFIENSLYADAQPTKMFYFTPCFRYEKMQKG---R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF       F             + +  L     +   S+ + +   P      +E +
Sbjct: 121 LREFHQYGIEVFGSQEASIDAEILSLVMRALTEDFGIKGLSLNINSLGCPKCRAKFNEAL 180

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---PYAATSDVHNEKLF 268
                      C      F                 IV++  +           H  KL 
Sbjct: 181 KQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSILDYICEECSDHFSKLK 240

Query: 269 DSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
             L            I  G  +Y  T + +          G+  Y+     G     +  
Sbjct: 241 AYLDVMGIEYNIDPQIVRGLDYYSKTVFEVIKDGLTVCGGGRYDYLVEEVDGPKTPAMGF 300

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +               +       + I +     +    K+   L K G     D +G+
Sbjct: 301 GLGLERLLLILDEEGIEIPEPVRCEVYIGSMGDNAKLEAMKLAFNLRKAGIKAEIDHLGK 360

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE--EVINYAS 439
            + +Q   A+ +G     I+G   + ++K++IK    G + ++SL+  E++N   
Sbjct: 361 SVKAQMKYANKIGAKYTFIIGDSEIEENKIKIKRMSDGEQFEISLDINEIVNIVK 415


>gi|54020011|ref|YP_115575.1| glycyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
 gi|53987184|gb|AAV27385.1| glycyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
 gi|312601026|gb|ADQ90281.1| Glycyl-tRNA synthetase [Mycoplasma hyopneumoniae 168]
          Length = 455

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/469 (14%), Positives = 135/469 (28%), Gaps = 51/469 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGI---YSWLPLGQKALDNVNAIIREEQ 61
            +F+  L+E            +       Q   G+   Y +  LG     N+     +  
Sbjct: 8   NFFINQLRE------------LGFVFPSSQIYGGLANSYDYGHLGVLLRKNIENFWADFF 55

Query: 62  NRTG--AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
             +   A  +    L +  +W  SG  D++  ++L     N K        EE       
Sbjct: 56  VNSNPNAFFIDSKILLNPKVWQASGHLDNFV-DLLVENKINKKRYRVDHLFEE-FFPEVA 113

Query: 120 SHIKSYRNLPFTFYQIQ--------LKFRDELRPRFGVMRS-----------REFLMKDA 160
               S   +     QIQ             +    F   +            R    +  
Sbjct: 114 FEKLSQDEIRGYLSQIQLLENTKVEWASPKKFNLLFPTYQGIIEDEKTLLYLRPETAQGI 173

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           +        +  +   + ++ +    R  +        +          F+    +    
Sbjct: 174 FINFKNLLRTTKNSLPLIIAQVGKSFRNEISPGNFIFRTREFVQLELEIFLKPDQSENFF 233

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
               +   +F    +     + I LN   ++  A YA  +            E   +S R
Sbjct: 234 QNEIEKIKNFL--KKLGFARNSIRLNYHKKEKLAHYAKATVDFEYNFNFGWGELIGISNR 291

Query: 281 GIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI---ESSHDG 335
           G      H    G K     SAT     GK     +    +G  R++ AV+         
Sbjct: 292 GDYDLKNHSEKSGEKLEFVDSAT-----GKKFLPHIIEPSMGLDRLMLAVLEECFCFDSV 346

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           K   +           + +    +      EKI+  L            G  IG ++   
Sbjct: 347 KNRYFLKLPFILSPYKVAVLPLLKKFNFLAEKIWKELISQKISATLVTSG-SIGKRYYHQ 405

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D++G    + +  K V +S V ++ R T  ++ + ++E+  +    F N
Sbjct: 406 DVIGTYFCITIDQKSVENSIVTLRFRDTTEQKTLKIDEITKFIKENFVN 454


>gi|168208634|ref|ZP_02634259.1| histidyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|170712977|gb|EDT25159.1| histidyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
          Length = 415

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 121/415 (29%), Gaps = 12/415 (2%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        +   +R+     G  E+  P  ++ +L+        D   K
Sbjct: 4   QAQKGTKDMLPNDAYKWHYIEEKLRKISAEYGIREIRTPMFEATELFKRGVGETTDVVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P         F  +       P   +     FR E   +    R
Sbjct: 64  EMYTFEDKGGRSITLKPEGTAPAVRAFIENSLYADAQPTKMFYFTPCFRYEKMQKG---R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF       F             + +  L     +   S+ + +   P      +E +
Sbjct: 121 LREFHQYGIEVFGSQEASIDAEILSLVMRALTEDFGIKGLSLNINSLGCPKCRAKFNEAL 180

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---PYAATSDVHNEKLF 268
                      C      F                 IV++  +           H  KL 
Sbjct: 181 KQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSILDYICEECSDHFSKLK 240

Query: 269 DSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
             L            I  G  +Y  T + +          G+  Y+     G     +  
Sbjct: 241 AYLDVMGIDYNIDPQIVRGLDYYSKTVFEVIKDGLTVCGGGRYDYLVEEVDGPKTPAMGF 300

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +               +       + I +     +    K+   L K G     D +G+
Sbjct: 301 GLGLERLLLILDEEGIEIPEPVRCEVYIGSMGDNAKLEAMKLAFNLRKAGIKAEIDHLGK 360

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE--EVINYAS 439
            + +Q   A+ +G     ++G   + ++K++IK    G + ++SL+  E++N   
Sbjct: 361 SVKAQMKYANKIGAKYTFVIGDSEIEENKIKIKRMSDGEQFEISLDINEIVNIVK 415


>gi|170078871|ref|YP_001735509.1| histidyl-tRNA synthetase [Synechococcus sp. PCC 7002]
 gi|229558736|sp|B1XJ88|SYH_SYNP2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|169886540|gb|ACB00254.1| histidyl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 426

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/404 (15%), Positives = 119/404 (29%), Gaps = 21/404 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V A++R+   R    E+  P  +   L+        D   KEM    DR D+ +   
Sbjct: 21  WQQVEAVVRDCLGRAMYQEIRTPIFEQTSLFERGIGEATDVVSKEMYSFTDRGDRPITLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         +       +      +     FR E        R R+F            
Sbjct: 81  PEGTAGAVRAYIERKLFAQGGVQRLWYTGPMFRYERPQAG---RQRQFHQVGVEVLGSAD 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-----TGETQVF 222
             +      +    L    +LGLK++ ++  S   GGD       L D       +    
Sbjct: 138 PRADVEVMAIATEIL---QKLGLKNLSLQLNSVGNGGDRQRYREALVDYLTPFKADLDAD 194

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR------ 276
             +     P+   ++       +              S  H +++  SL           
Sbjct: 195 SQERLERNPLRILDSKDQKTQEIAQNAPSILDYLGDDSKKHFDQVQSSLTALGIDYVLNP 254

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F  + S   +       G+   +     G     V  A+        
Sbjct: 255 CLVRGLDYYTHTAFEIQSSDLGAQATVCGGGRYDGLVAELGGPETPAVGWAIGLERLVIL 314

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                ++  P       + +  +    A   +  +L   G  V  D  G   G QF  AD
Sbjct: 315 LQQLGEASGPQL--DFYLVSKGEQAEAAAVILAHKLRFAGFSVELDLSGSAFGKQFKRAD 372

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             G    +++G +   + +V++K   T  +E ++  +++     
Sbjct: 373 RSGAIACLVLGDEEAVNQQVQLKWLQTKAQETLAQADLLGNLES 416


>gi|212710614|ref|ZP_03318742.1| hypothetical protein PROVALCAL_01680 [Providencia alcalifaciens DSM
           30120]
 gi|212686695|gb|EEB46223.1| hypothetical protein PROVALCAL_01680 [Providencia alcalifaciens DSM
           30120]
          Length = 425

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 137/430 (31%), Gaps = 40/430 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP   +    + A ++      G  E+  P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTRVWQKIEATLKNILQGYGFSEIRTPIVEQTPLFRRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN++++   P +          H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FNDRNEESLTLRPENTAGCVRAGIEHGLLYNQEQRLWYL-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKH----SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
               A  F L              + + +     H     +     ++     D    F+
Sbjct: 126 HQLGAEVFGLAGPDIDAEVILMTARWWRALGISEHVTLELNSIGSLDARANYRDALVAFL 185

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                   +  C +     P+   ++   DI +L +          A S  H E L   L
Sbjct: 186 EQHKDKLDED-CKRRMYSNPLRVLDSKNQDIQALLNDAPALFDYLDAESREHFEGLCKLL 244

Query: 272 P------ENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                     +   RG++     +F       G++ ++     + G    +      +  
Sbjct: 245 DNAGIQYRVNQRLVRGLDYYNRTVFEWVTTALGSQGTVCAGGRYDGLV--EQLGGRATPA 302

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL------ 372
           +G    +  ++    +       D+           +   Q      EK+   L      
Sbjct: 303 VGFAMGMERMVLLVQEVNPEFTADTSVADVYLASFGENSQQAALLIAEKVRDELPTLRLM 362

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +  G        G     Q A AD  G  + +I+G   +++S+V +K   TG +E +S +
Sbjct: 363 TNHG--------GGNFKKQLARADKQGAKIALILGEDEINNSQVTLKDLRTGEQETISQQ 414

Query: 433 EVINYASHRF 442
            V +  +   
Sbjct: 415 LVASRIAALL 424


>gi|222151515|ref|YP_002560671.1| histidyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
 gi|254782335|sp|B9E707|SYH_MACCJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|222120640|dbj|BAH17975.1| histidyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
          Length = 420

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 67/416 (16%), Positives = 128/416 (30%), Gaps = 25/416 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V + +          E+  P  +S DL+     G  D   KEM    D+ 
Sbjct: 13  LPAETAKWRYVESKLHNIAANYNYKEIRTPMFESTDLFARGVGGSTDIVQKEMYTFKDKG 72

Query: 101 DKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           D+++   P     +      + +    N P   Y     FR E + +    R R+F+   
Sbjct: 73  DRSLTLRPEGTAAVVRSYIENKMNGDANQPVKLYYNGPMFRYERKQKG---RYRQFVQFG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                   P       + ++  Y       GLK I +   S             L +  E
Sbjct: 130 VEAIGSENPAIDAEVIHMVYNIYKS----FGLKHIKIVLNSIGDMDSREEYKQALIEHFE 185

Query: 219 TQV--FCSKDFMDFPIPSENTDFDDIISLNSIVE------QWTAPYAATSDVHNEKLFD- 269
             +  FC+                 +      V+      ++   Y+       ++  D 
Sbjct: 186 PHINNFCNDCKNRLHTNPMRILDCKVDHEQPTVKTAPKITEYLNDYSKNYYEEVKQYLDL 245

Query: 270 ----SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                + +   V          F   ++     + T     G+ + +     G     + 
Sbjct: 246 LNIPYIEDASLVRGLDYYTHTAFEVMSEAEGFGAITTLCGGGRYNGLLEMLDGPKETGIG 305

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A+               +   +   I +    +  ++   KI A L   G     D +G
Sbjct: 306 FALSIERLLLAIEAEDIQLDVEESVDIFVVTMPETVKE-AVKIVAELRNAGIRCDMDYLG 364

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            ++  Q   AD +     V++GS  +  +K++IK   TG  E + L+++ +Y    
Sbjct: 365 RKMKGQMKQADRIHATYTVVLGSNEIETNKIQIKAMQTGESETIKLQDIASYIKGE 420


>gi|169343616|ref|ZP_02864615.1| histidyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
 gi|169298176|gb|EDS80266.1| histidyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
          Length = 415

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 121/415 (29%), Gaps = 12/415 (2%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        +   +R+     G  E+  P  ++ +L+        D   K
Sbjct: 4   QAQKGTKDMLPNDAYKWHYIEEKLRKISAEYGIREIRTPMFEATELFKRGVGETTDVVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P         F  +       P   +     FR E   +    R
Sbjct: 64  EMYTFEDKGGRSITLKPEGTAPAVRAFIENSLYADAQPTKMFYFTPCFRYEKMQKG---R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF       F             + +  L     +   S+ + +   P      +E +
Sbjct: 121 LREFHQYGIEVFGSQEASIDAEILSLVMRALTEDFGIKGLSLNINSLGCPKCRAKFNEAL 180

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---PYAATSDVHNEKLF 268
                      C      F                 IV++  +           H  KL 
Sbjct: 181 KQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSILDYICEECSDHFNKLK 240

Query: 269 DSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
             L            I  G  +Y  T + +          G+  Y+     G     +  
Sbjct: 241 AYLDVMGIEYNIDPQIVRGLDYYSKTVFEVIKDGLTVCGGGRYDYLVEEVDGPKTPAMGF 300

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +               +       + I +     +    K+   L K G     D +G+
Sbjct: 301 GLGLERLLLILDEEGIEIPEPVRCEVYIGSMGDNAKLEAMKLAFNLRKAGIKAEIDHLGK 360

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE--EVINYAS 439
            + +Q   A+ +G     ++G   + ++K++IK    G + ++SL+  E++N   
Sbjct: 361 SVKAQMKYANKIGAKYTFVIGDSEIEENKIKIKRMSDGEQFEISLDINEIVNIVK 415


>gi|220932052|ref|YP_002508960.1| histidyl-tRNA synthetase [Halothermothrix orenii H 168]
 gi|254782333|sp|B8CXE6|SYH_HALOH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|219993362|gb|ACL69965.1| histidyl-tRNA synthetase [Halothermothrix orenii H 168]
          Length = 419

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/403 (13%), Positives = 111/403 (27%), Gaps = 13/403 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    R         E+  P  +  +L+        D   KEM    D+  +++   
Sbjct: 20  WQYIEDTARRIFQMYNYKEIRTPIFEYTELFQRGIGETTDIVEKEMYTFEDKGGRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  H    +  P  ++ I   FR E        R R+F      +F    
Sbjct: 80  PEGTASVVRAFLEHKIYGQVQPTKYFYIGPMFRYERPQAG---RFRQFHQLGVEAFGSND 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET--QVFCSK 225
                    + +  L+      ++               S E     ++ +      C  
Sbjct: 137 PALDAEVIALGLDILKRLGLTDVEVFINSIGCPECRARYSDELKQYLESHQDRLCKDCKA 196

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSA 279
                P+   +   ++   +     +          VH E + + L              
Sbjct: 197 RLNKNPLRILDCKNEECSLVIKNAPKILDYLCDNCRVHFEDVQEYLDLLGIKYRVDPTLV 256

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG++      F  K+    +       G+ + +           +  AV           
Sbjct: 257 RGLDYYTNTAFEIKFKELGAQDAIFGGGRYNGLTEEIGNKSIPGIGFAVGIERLILALDK 316

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
               +       + +    +  + A       L + G     D +G  I SQ   AD  G
Sbjct: 317 KGIKLPVNDSIDVYLVTIGERAKRAAFNYTYLLRESGITAEIDYLGRSIKSQMKSADRTG 376

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               +I+G   +   K  +K+  TG + ++ L  +I       
Sbjct: 377 ASYTIIIGDSELDSGKATVKNMRTGEQVEIMLANLIEEMQKLV 419


>gi|168214146|ref|ZP_02639771.1| histidyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|170714344|gb|EDT26526.1| histidyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
          Length = 415

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 121/415 (29%), Gaps = 12/415 (2%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        +   +R+     G  E+  P  ++ +L+        D   K
Sbjct: 4   QAQKGTKDMLPNDAYKWHYIEEKLRKISAEYGIREIRTPMFEATELFKRGVGETTDVVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P         F  +       P   +     FR E   +    R
Sbjct: 64  EMYTFEDKGGRSITLKPEGTAPAVRAFIENSLYADAQPTKMFYFTPCFRYEKMQKG---R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF       F             + +  L     +   S+ + +   P      +E +
Sbjct: 121 LREFHQYGIEVFGSQEASIDAEILSLVMRALTEDFGIKGLSLNINSLGCPKCRAKFNEAL 180

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---PYAATSDVHNEKLF 268
                      C      F                 IV++  +           H  KL 
Sbjct: 181 KQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSILDYICEECSDHFSKLK 240

Query: 269 DSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
             L            I  G  +Y  T + +          G+  Y+     G     +  
Sbjct: 241 AYLDVMGIEYNIDPQIVRGLDYYSKTVFEVIKDGLTVCGGGRYDYLVEEVDGPKTPAMGF 300

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +               +       + I +     +    K+   L K G     D +G+
Sbjct: 301 GLGLERLLLILDEEGIEIPEPVRCEVYIGSMGDRAKLEAMKLAFNLRKAGIKAEIDHLGK 360

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE--EVINYAS 439
            + +Q   A+ +G     ++G   + ++K++IK    G + ++SL+  E++N   
Sbjct: 361 SVKAQMKYANKIGAKYTFVIGDSEIEENKIKIKRMSDGEQFEISLDINEIVNIVK 415


>gi|311893995|dbj|BAJ26403.1| putative prolyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 556

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 110/228 (48%), Gaps = 4/228 (1%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQ 61
            S+ F P  +    D    +  L+   G++    + G+++ LPLG +  D ++ I R+  
Sbjct: 10  ASRLF-PTPRPRATDPTAPTKDLLEHLGLVGRTDTTGVHTLLPLGLRVRDQLDRITRDAF 68

Query: 62  NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN-DKAMIYGPTHEEVMTDIFRS 120
            R G   +++PTLQS  LW ESGR+  Y  E   +  R     M   PT EE+ T   RS
Sbjct: 69  ERNGFNSLALPTLQSRTLWEESGRWKVYTAEGALVTTRVGGADMCLAPTSEEMATATVRS 128

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H++S+R+LP        KFRDEL PR G+MR REF M DAY+FD    G   S   +  +
Sbjct: 129 HLRSHRDLPVRLTLNTTKFRDELSPRGGLMRGREFTMADAYTFDPDRAGMLESVRLLNRA 188

Query: 181 YLRIFHRLG-LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                  +G        A+ G I    + E +VLAD G++ +      
Sbjct: 189 CTDALTGIGLHGVFQAPADGGAISAGPTTEHLVLADFGQSSILACDHC 236



 Score = 77.1 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 4/184 (2%)

Query: 260 SDVHNEKLFDSLPENKRVSARG---IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           +DVH                R    +EV H+F  GT+YS  M  TF   +G      MG 
Sbjct: 372 ADVHTAADGLDCGRCSAGRYRATEAVEVAHVFELGTQYSGKMHLTFTDDNGIQRTPYMGC 431

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            GIG  R +  +     D  G+ W     P  + L+ +++     ++  ++   RL ++G
Sbjct: 432 SGIGLTRCIQTLAGIHRDANGLRWKPGTGPADVHLVVLRSDQAEQQERTDRTARRLQQLG 491

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             +  DD     G +F  A  LG P  +++  +  +D ++E   R TG R  ++ +++  
Sbjct: 492 LRLLIDDRPLPAGEKFHYAQALGVPTALVLSPQ-RADGELEAIDRWTGRRSTITSDQLHT 550

Query: 437 YASH 440
               
Sbjct: 551 LLRS 554


>gi|271501570|ref|YP_003334596.1| histidyl-tRNA synthetase [Dickeya dadantii Ech586]
 gi|270345125|gb|ACZ77890.1| histidyl-tRNA synthetase [Dickeya dadantii Ech586]
          Length = 424

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/425 (14%), Positives = 128/425 (30%), Gaps = 29/425 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++     G  E+  P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPAETALWQRIEDSLKQVLRGYGYSEIRTPLVEQTSLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGILYNQEQRLWYT-GPMFRHERPQKG---RYRQF 125

Query: 156 LMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFI 211
                  F    P+            +  +     +    +     ++     D    F+
Sbjct: 126 HQLGCEVFGLKGPDIDAEMILMTARWWRVLGIDQHVNLELNSIGSLDARARYRDALIAFL 185

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD-- 269
                 +    C +     P+   ++    + +L +     T      S  H ++L +  
Sbjct: 186 EQH-KDQLDEDCLRRMYTNPLRVLDSKNAQVQALLNNAPTLTDYLDDESRTHFDELCELL 244

Query: 270 -----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                       L        R +        G++ ++     + G   +       + G
Sbjct: 245 TQSGIPYKVNPRLVRGLDYYNRTVFEWVTSSLGSQGTVCGGGRYDGMVEQLGGSSTPAVG 304

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G       ++  + +    + P         + +            EK+   L ++   
Sbjct: 305 FGMGLERLVLLVQTVNPAFAVQP---GVDAYLISSGAGTQHAAIRLAEKLRDALPQLKLM 361

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +   G     QFA AD  G  + +++G   V+  +V +K+   G +E +S  +V    
Sbjct: 362 TNY--GGGNFKKQFARADKSGARVALVLGETEVAAGQVVLKNLTNGEQETLSQADVAARL 419

Query: 439 SHRFS 443
           +   +
Sbjct: 420 AALLN 424


>gi|255038651|ref|YP_003089272.1| glycyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
 gi|254951407|gb|ACT96107.1| glycyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
          Length = 494

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/450 (13%), Positives = 126/450 (28%), Gaps = 53/450 (11%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTG--AIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +Y +   G +  +N+ A   +   +     + +          W  SG  D +   M+  
Sbjct: 35  VYDYGQNGVELKNNLKAAWWKAMTQLNDNIVGIDAAIFMHPLTWKASGHVDGFNDPMIDN 94

Query: 97  ADRNDK------------AMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDE 142
            D   +                    E+    +        +          I    + +
Sbjct: 95  KDSKKRYRADQLLEGKAEQYEKDGQPEKAKALLAEMGRLLSAEDLNGVRELIIAEDIKCQ 154

Query: 143 LRPRFGVMRSREFLMKDAY-----------SFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
           +         R+F +  +             +           N + V            
Sbjct: 155 VSGTTNWTEVRQFNLMFSTQVGSVAEDANMIYLRPETAQGIFVNFLNVQKSGRMKVPFGI 214

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVF---CSKDFMDFPIPSENTDFDDIISL--- 245
           +   +A    I        +   +  E Q F    ++             F   I L   
Sbjct: 215 AQIGKAFRNEIVARQFIFRMREFEQMEMQFFVRPGTEQEWYEKWKEARLKFHKAIGLPAE 274

Query: 246 --NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                     A YA  +     +      E + + +R           +K          
Sbjct: 275 KLKYHDHDKLAHYAKAAVDIEFEFPFGFREIEGIHSRSDFDLRNHQELSKKKQQYFDADL 334

Query: 304 GADGKDH---YVQMGSYGIGAMRVVAAVIESSH------------DGKGIIWPDSVAPFK 348
             +GK +      +    +GA R+  A   +++            +   +    ++APFK
Sbjct: 335 DENGKPYGNYIPYVVETSVGADRLFLATFCNAYTVESVGEGDAAKERTFLKLHPALAPFK 394

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
            +++ +   D    +  + +   L        +DD    IG ++   DL+G P  ++V  
Sbjct: 395 AAVLPLVKKD-GLAEKAQALANSLKSS-FRTVYDD-NAAIGKRYTRQDLIGTPYCIVVDY 451

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           + + D  V I+HR T  +E + + E+    
Sbjct: 452 QTMEDDTVTIRHRDTMEQERVHISELKEKI 481


>gi|91792615|ref|YP_562266.1| histidyl-tRNA synthetase [Shewanella denitrificans OS217]
 gi|122968867|sp|Q12PT3|SYH_SHEDO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|91714617|gb|ABE54543.1| histidyl-tRNA synthetase [Shewanella denitrificans OS217]
          Length = 424

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 65/424 (15%), Positives = 127/424 (29%), Gaps = 28/424 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        V A++R   +  G  E+  P ++S DL+  S G   D   KEM  
Sbjct: 10  GMNDILPTQSPLWQKVEAVLRSSVSAYGYSEIRTPIVESTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y +   FR E   +    +  +F
Sbjct: 70  FEDRNSDSLTLRPEGTASTVRAGNEHGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQF 128

Query: 156 LMKDAYSFDLT--------------PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            ++                        G     +    +      R   +   + A    
Sbjct: 129 GVEVYGIGTADIDAEVLMLSARLWQQLGIDEHVSLELNTLGDPSERAAYRDA-LIAFLEQ 187

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
               L  +      +   +V  +KD     + ++     D +   S     T      + 
Sbjct: 188 HKDKLDEDSQRRMYSNPLRVLDTKDSQVQALLADAPALMDYLGEESKTHFSTLCELLDAV 247

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               ++   L        R +        G++ ++     + G  G+       + G   
Sbjct: 248 GIQYRVNPRLVRGLDYYNRTVFEWVTTSLGSQGTVLAGGRYDGLVGQLGGKDTPAVGFAM 307

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDV 379
                 ++  +      I P+      + +      D    +   K+   L +   G  V
Sbjct: 308 GLERIVLLLETLGLNQDIAPE------VDVYVTAMGDSCLVE-AFKVAQELRQALPGLKV 360

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYA 438
                G  +  Q   AD  G    +I+G   +++++V IK  R    +E ++ + +    
Sbjct: 361 MSHCGGGNVKKQMKRADKSGAAYAIIIGENELANNQVAIKPLRNNNQQELVARDALAETI 420

Query: 439 SHRF 442
           S   
Sbjct: 421 SALI 424


>gi|2392169|pdb|1ATI|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase From Thermus
           Thermophilus
 gi|2392170|pdb|1ATI|B Chain B, Crystal Structure Of Glycyl-Trna Synthetase From Thermus
           Thermophilus
          Length = 505

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 74/492 (15%), Positives = 145/492 (29%), Gaps = 77/492 (15%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAII--REEQNRTGAIEMSVPTLQSADL 79
           R G I Q S      +G+Y + PLG +  +N+      R    R     +    L    +
Sbjct: 14  RRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLV 73

Query: 80  WVESGRYDSYGKEMLRL---ADRNDKAMIYGPTHEEV----------------------- 113
              SG   ++   M+       R     +     EEV                       
Sbjct: 74  LHYSGHEATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMM 133

Query: 114 ---------MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM-KDAYSF 163
                    MT        S     +T  +       +LR   G      +L  + A   
Sbjct: 134 QAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGI 193

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
            +  +    + ++     +    +     I  R     +      E       GE + + 
Sbjct: 194 FVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWH 253

Query: 224 SKDFMD-FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG- 281
                +      E     + +       + +A YA  +     +      E + ++ R  
Sbjct: 254 RYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTD 313

Query: 282 IEVG-----------HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            ++G                  ++S    A      GK     +     G  R V A++ 
Sbjct: 314 FDLGSHTKDQEALGITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLA 373

Query: 331 SSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVF 380
            +   + +              +AP K+++I +  +     +  +++ ARL  +G   V 
Sbjct: 374 EAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVL 433

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFV---SDSK------VEIKHRLTGIREDMSL 431
           ++D G  IG  +   D +G P  V V    +    D        V ++ R T  +  + +
Sbjct: 434 YEDTG-NIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHV 492

Query: 432 EEVINYASHRFS 443
           +E+  +   R  
Sbjct: 493 DELEGFLRERLR 504


>gi|12224878|emb|CAC21664.1| hypothetical protein [Homo sapiens]
          Length = 235

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 74/228 (32%), Gaps = 19/228 (8%)

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                  D           +      +     A Y    DVH   L D+L    +     
Sbjct: 19  LGDPCLWDQAEQVLKQALKEFGEPWDLNSGDGAFYGPKIDVH---LHDALGRPHQCGTIQ 75

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIW 340
           ++    F    ++       +KG  G       +    +G++  +  V+    +  G  W
Sbjct: 76  LD----FQLPLRFD----LQYKGQAGALERPVLIHRAVLGSVERLLGVLA---ESCGGKW 124

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLG 399
           P  ++PF++ +I + +  +   +  ++    L   G     D D G  +  +   A L  
Sbjct: 125 PLWLSPFQVVVIPVGSEQE---EYAKEAQQSLRAAGLVSDLDADSGLTLSRRIRRAQLAH 181

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +  Q +VG K  S   V I+ R      +  L E +       +   P
Sbjct: 182 YNFQFVVGQKEQSKRTVNIRTRDNRRLGEWDLPEAVQRLVELQNTRVP 229


>gi|269114991|ref|YP_003302754.1| glycyl-tRNA synthetase [Mycoplasma hominis]
 gi|268322616|emb|CAX37351.1| Glycyl-tRNA synthetase [Mycoplasma hominis ATCC 23114]
          Length = 458

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/444 (12%), Positives = 132/444 (29%), Gaps = 39/444 (8%)

Query: 29  TGMIHQHS---KGI---YSWLPLGQKALDNVNAII-REEQNRTGAIEMSVPTLQSADLWV 81
           +G ++Q+S    G+   + + PL    +  +     RE   + G +++    + +  +W 
Sbjct: 19  SGFVYQNSEIYGGLINTWDYGPLAVNIMTAIKKYWVREFIAKEGNVQIDSKIIMNPKVWK 78

Query: 82  ESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
            SG  D++     E      R     I      E+  +                     K
Sbjct: 79  ASGHLDNFSDFLIENKLNQKRYRADHIVKDLFPEINVEKATFEELEEIIKEKVKEYDGSK 138

Query: 139 FRDELRPRFGVMRSREF---------------LMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
                   F +M   +                  +  +        +  +     +  + 
Sbjct: 139 TEWSSIRPFNLMFKTQMGAIDTAANQTYLRPETAQGIFINFKNVLRTTRAKLPFGIGQIG 198

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
              R  +        +          F   +D  +   +  K  +DF          + I
Sbjct: 199 KSFRNEITPRDFIFRTREFEQMELEYFCNPSDDEKFYHYWIKKCVDFVT--LLGLKSENI 256

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
            +    ++  + Y+  +            E   ++ RG          +  S      + 
Sbjct: 257 RIRPHEKEELSHYSKGTSDIEYLFPFGWGELLGIANRGNYDLSQHMKYSNES----LEYL 312

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG------IIWPDSVAPFKISLINIKAH 357
             DG      +    IG  R++ A++  S++ +        I            + I   
Sbjct: 313 LDDGTKIIPHVIEPSIGLDRLLLALLVDSYEEQELENNDVRIVLKLDFNIAPYQVAIFPL 372

Query: 358 DQVCRDACEKIYARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            +      ++I+  L +     + +D+ G  IG ++   D +G P  V +    +  + V
Sbjct: 373 MKKLNSKAKEIFDNLLQKTELRLIYDESG-SIGKRYRRQDAIGTPFAVTIDFDTLEKNTV 431

Query: 417 EIKHRLTGIREDMSLEEVINYASH 440
            ++ R +  +  + L+ +I +  +
Sbjct: 432 TVRERDSMKQHVVELDNLIKFFEN 455


>gi|315123115|ref|YP_004065121.1| histidyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
 gi|315016875|gb|ADT70212.1| histidyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
          Length = 426

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 65/420 (15%), Positives = 121/420 (28%), Gaps = 26/420 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP   +    V  I+RE  +  G  E+  P ++S DL+  S G   D   KEM   ADRN
Sbjct: 15  LPGDTQVWQKVEHILRETVSSFGYQEIRFPIVESTDLFKRSIGEVTDIVEKEMYTFADRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
              +   P    V       +   Y      +Y +   FR E   +    +  +F ++  
Sbjct: 75  GDNLTLRPEGTAVCVRAGNENGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQFGLETF 133

Query: 161 YSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
                  +                        + LG      +     I     H  ++ 
Sbjct: 134 GIASADIDAEVILLTAQLWEAFGISDHVRLELNSLGSNEARAQYRDALIAFLEQHTDVLD 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSLP 272
            D+           +D   P       D   L+  ++  +   +    +  +        
Sbjct: 194 EDSKRRMYSNPLRVLDTKNPDIQAILVDAPKLSEHLDTESKEHFENLCERLDAAGVKYTV 253

Query: 273 ENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             K V         +F       G + ++     + G   +       + G         
Sbjct: 254 NEKLVRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVEQLGGKSTPAVGFAMGLERLV 313

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMG 385
           ++  + +  G I         + L  +     +       I + L +   G  V     G
Sbjct: 314 LLLQALECVGDIRR----STDVYLAAMGDKASIQAPI---IASTLRRDVPGLRVMVHAGG 366

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHRFSN 444
                Q   AD     + VI+G   +    V IK+ R    +  + LE+     +   ++
Sbjct: 367 GNFKKQLKRADKSDALVAVIIGEDELEQGVVTIKYLRERKEQVTLELEQAKALLAELINS 426


>gi|326201903|ref|ZP_08191773.1| histidyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325987698|gb|EGD48524.1| histidyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 442

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 73/443 (16%), Positives = 136/443 (30%), Gaps = 53/443 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G    LP  Q   +N+   I++   + G I +  P ++ ++ L  +SG      ++ + 
Sbjct: 12  PGFMELLPADQIVFNNMLDTIKKTYEKYGFIPLDTPMIEKSEVLLAKSG---GETEKQVY 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             ++ D  +         +      H       PF  Y I   FR E   +    R REF
Sbjct: 69  RFNKGDNDLSLRFDLTVPLARYVSQHFGD-LTFPFKRYHIGKVFRGEKPQKG---RFREF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              D            +    + V Y   F  LG     +R  +  +  +   E + ++D
Sbjct: 125 YQCDIDIIGNENLSVINDAEILSVIY-STFKALGFDDFTIRINNRKVL-NGFFEGLQVSD 182

Query: 216 TGET-------QVFCSKDFMDFPIP-------------------SENTDFDDIISLNSIV 249
             E        +   ++  +                        S       +  +N   
Sbjct: 183 KTEVLRTIDKLEKIGNEAVLKELEAIGLSKENSQRVLDFVGTKGSCRDIIKHLREMNFQN 242

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-----------SLPM 298
           E +         V N      +P         I  G  +Y GT Y           S+  
Sbjct: 243 EMFNEGIDELELVVNYIDSFKVPSANYTIDLTIARGLDYYTGTIYETVLNRYPSIGSVCS 302

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
              +     K    ++   GI                 G +   + +   +  +N    +
Sbjct: 303 GGRYDNLAQKYTTKKLPGVGISIGLSRLFYQLREAGILGEMKRATPSEILVIPMNGTMGN 362

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   +I  ++   G          +IG +F+ AD LG P  ++VG   V     ++
Sbjct: 363 ------ALEIATKIRDEGVSAEIYFNEGKIGKKFSYADKLGIPYVIVVGEDEVKSGIFKL 416

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           K   TG + D+S+E++I     +
Sbjct: 417 KDMATGEQADLSVEQIIEKLKAQ 439


>gi|169829162|ref|YP_001699320.1| glycyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|238688185|sp|B1HTI6|SYG_LYSSC RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|168993650|gb|ACA41190.1| Glycyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
          Length = 461

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/441 (13%), Positives = 132/441 (29%), Gaps = 50/441 (11%)

Query: 40  YSWLPLGQKALDNV-----NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +N+        ++E ++  G   +    L +   WV SG   ++   M+
Sbjct: 33  WDYGPLGVELKNNIKKAWWQKFVQESEHNVG---IDAAILMNPKAWVASGHVGNFNDPMI 89

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
                  +        +  +       +            I+         +      R+
Sbjct: 90  DCKSCKARHRADKIIEDAALAKGDEIIVDGMTFDQMKETMIKYDVVCPDCGKADFTDIRQ 149

Query: 155 FLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLK 191
           F +       +T   +   + +          F +  R                 R  + 
Sbjct: 150 FNLMFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKRTPFGIAQIGKSFRNEIT 209

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  +          F    +  E   +  +   ++ +       +D + L    + 
Sbjct: 210 PGNFTFRTREFEQMELEFFCKPGEDLEWHSYWKEFCKNWLLN--LGMKEDSMRLRDHEDD 267

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             + Y+  +     K      E   ++ R            ++S              + 
Sbjct: 268 ELSHYSNATTDIEFKFPFGWGELWGIADRTDYDLKQH---MEHSGEDFTYIDPVSNDRYI 324

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCR 362
                  +GA RV  A +  ++D + +          +  ++APFK +++ +        
Sbjct: 325 PYCIEPSLGADRVTLAFLCDAYDEEELEGDDKRTVLRFHPAIAPFKAAVLPLSKK---LS 381

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D    ++A L K    V +D+  + IG ++   D +G P  +        D +V ++HR 
Sbjct: 382 DEATDVWAELRKA-FPVDFDES-QSIGKRYRRQDEIGTPFCITYDFDSKEDGQVTVRHRD 439

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +  +E M + EV  Y      
Sbjct: 440 SMTQERMPISEVKAYIEKHLQ 460


>gi|167040110|ref|YP_001663095.1| histidyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|300914195|ref|ZP_07131511.1| histidyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307724570|ref|YP_003904321.1| histidyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|229558739|sp|B0K0N4|SYH_THEPX RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166854350|gb|ABY92759.1| histidyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|300889130|gb|EFK84276.1| histidyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307581631|gb|ADN55030.1| histidyl-tRNA synthetase [Thermoanaerobacter sp. X513]
          Length = 418

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/404 (12%), Positives = 125/404 (30%), Gaps = 19/404 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  +IRE  +  G  E+  P  +  +L++       D   KEM    D+  +++   
Sbjct: 20  WQYIEGLIREICDVYGFKEIRTPGFEHTELFLRGVGESTDIVRKEMYTFTDKGGRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
                     F  H       P   Y I   +R E      +    +F ++   + + + 
Sbjct: 80  AEGTSPAVRAFIEHNLYAETQPTKLYYITPVYRYERPQSGRLREHHQFGVEIFGAKNASA 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +    S     +  L + +     +             +  +F+        +  C    
Sbjct: 140 DAEVISVAMTLLKKLGLNNLELRINSVGCPVCRKNYNKVLKDFL----KDNLEYLCDDCK 195

Query: 228 MDFPIPSENTDFDDIISL-----------NSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           + + I         + S            + + +   + +       +   +D + + + 
Sbjct: 196 VRYEINPLRVLDCKVESCQRITKDAPLITDYLCDDCKSHFEELQKYLDIMGYDYIIDPRI 255

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V  RG++      F        +       G+   +     G     V   +        
Sbjct: 256 V--RGLDYYTKTAFEIISKDIGAQGTVCGGGRYDGLIEECGGPSMPGVGFGMGLERLLLT 313

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                  +   +   + I    +  +     +  +L   G  V  D+M   + +Q   A+
Sbjct: 314 LEQNGIEIPKPEGIDLFIAYVGEEAKLFTFALANKLRFNGLKVERDNMDRSLKAQMKYAN 373

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            L     +++G + + ++KV++K+   G   ++S++E+     +
Sbjct: 374 KLNAKFAIVIGEEEMKENKVKLKNMRDGSEVEISIDEIEQRIKN 417


>gi|116750724|ref|YP_847411.1| histidyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
 gi|116699788|gb|ABK18976.1| histidyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
          Length = 421

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/404 (14%), Positives = 111/404 (27%), Gaps = 25/404 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE     G  E+  P L+  +L+        D   KEM    DR    +   
Sbjct: 21  WQKVEKAAREVLEDFGYREIRTPVLEKLELFARGIGESTDIVEKEMYAFPDRKGDMLGLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  H          FY +   FR E   +    R R+F   DA +F +  
Sbjct: 81  PEATASVVRAYIQHNLQADPFTQKFYLMGPMFRHERPQKG---RYRQFHQIDAEAFGIDD 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT--GETQVFCSK 225
                    M       F R+GL  + +   S            VL +   G  +  C  
Sbjct: 138 PMLDAEVMYML---RLFFERVGLSGVVLHINSLGCHECRQEYRSVLKEYLGGHVERLCPD 194

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQ-----------WTAPYAATSDVHNEKLFDSLPEN 274
                           +    +++E                +A   D   +   D + + 
Sbjct: 195 CLRRRETNPLRVFDCKVERCQAVLEDAPLLPDYICGDCGEHFARVRDYLQQLQTDFVIDP 254

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           + V          F   T      +A   G         +G    G              
Sbjct: 255 RMVRGLDYYTRTTFEVITDRLGAQNAVGGGGRYNGLVRDLG----GPDLPGIGFAIGMER 310

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
              ++  +     +   + I    +  R     +  +   +G     D     + SQ   
Sbjct: 311 LILLLQQEGEESKRSPRLFIATLGEAARLKGFLLAQQFRALGVSTETDYEARSLKSQMRR 370

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           AD  G    +I+G + ++  +++++      + ++ L       
Sbjct: 371 ADRSGARYVLILGEEEIARGEIQLRDLREKSQVNLPLASASETV 414


>gi|160946398|ref|ZP_02093607.1| hypothetical protein PEPMIC_00358 [Parvimonas micra ATCC 33270]
 gi|158447514|gb|EDP24509.1| hypothetical protein PEPMIC_00358 [Parvimonas micra ATCC 33270]
          Length = 463

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/441 (14%), Positives = 139/441 (31%), Gaps = 49/441 (11%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +NV     ++  +     +      L + ++WV SG   S+   ++   
Sbjct: 34  WDYGPLGVEFKNNVKKAWWQKFVQQSKYNVGLDSAILMNPEVWVASGHVGSFSDPLIDCK 93

Query: 98  --------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
                   D+  +   +     ++  D + +                 K ++    R   
Sbjct: 94  ECKSRFRADKLIEDFYFENNLGDINVDGWENEKVEELMKEKNICCPNCKKQNFTGIRRFN 153

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL--- 206
           +  + F      S          +   +FV++  I      K     A+ G    +    
Sbjct: 154 LMFKTFQGVTEDSKSEIYLRP-ETAQGIFVNFKNIARTSRKKVPFGIAQVGKSFRNEITP 212

Query: 207 -----------SHEFIVLADTGET-QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                        E       GE  + +       F         ++ + L    ++  +
Sbjct: 213 GNFTFRTREFEQMELEFFCKPGEDLEWYEYWKNYSFNWLLSLGMNEETLRLRDHEKEELS 272

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGA-DGKDHY 311
            Y+  +            E   ++ R       HI   G          +      + + 
Sbjct: 273 FYSKATCDIEFLFPFGWGELWGIADRTDYDLSRHIEVSGED------LRYIDPVTNEKYI 326

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCR 362
                  +GA RV  A + +++D + I             ++APFK +++ +        
Sbjct: 327 PYCIEPSLGADRVALAFLCNAYDEEEIGEGDVRTVLRLHPALAPFKAAILPLTKK---LS 383

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  ++IY  LSK    +  D  G  IG ++   D +G P  + V    + D  V ++ R 
Sbjct: 384 EKSDEIYDELSKY-FMIDTDVSG-SIGKRYRRQDEIGTPFCITVDFDTLEDECVTVRFRD 441

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +E + + E+ ++      
Sbjct: 442 TMEQERIKISELKDFIEKSLE 462


>gi|21675063|ref|NP_663128.1| glycyl-tRNA synthetase [Chlorobium tepidum TLS]
 gi|59798593|sp|Q8KAB1|SYG_CHLTE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|21648301|gb|AAM73470.1| glycyl-tRNA synthetase [Chlorobium tepidum TLS]
          Length = 470

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/467 (12%), Positives = 119/467 (25%), Gaps = 59/467 (12%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G I   S         + + PLG +   N+  +      R     +       + +  
Sbjct: 10  RRGFIFPSSEIYGGLSSCFDYGPLGSEMKKNIKDLWWNAMTRR-HQNIVGIDASIMMNPT 68

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL---------- 128
           +W  SG   S+   M+       +        E  +  + R   ++              
Sbjct: 69  VWEASGHVASFNDPMIDDKT-TKRRYRADHLIENHIEKLHRDGKEAEAAAIKVAYEAAGG 127

Query: 129 ---PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL--------------TPEGSK 171
              P       +       P  G     E    +                          
Sbjct: 128 TEDPNRTLYNIIIEAGIKAPDTGSADWTEVRQFNLMFQCNMGAVADSAGVVYLRPETAQG 187

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--DFMD 229
              N   V            +   +A    I        +V  +  E Q F         
Sbjct: 188 IFVNFHNVREASRMKVPFGIAQIGKAFRNEIVKGNFIFRMVEFEQMEMQYFVKPGTQLEA 247

Query: 230 FPIPSENTDFDDIISLNSIVEQW-------TAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           F    E        +L    E+         A YA  +     +    + E + + +R  
Sbjct: 248 FEAWREERFRWYSETLGMSKEKLHWYKHDKLAHYADLAYDIKFEFPFGIEEIEGIHSRTD 307

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
                     KYS            + +   +     G  R   A++  ++    +    
Sbjct: 308 FDLSQHQ---KYSGKSMEYIDQTTNERYIPYVVETSSGCDRTFLALLSDAYQEDVVDGEP 364

Query: 343 SVAPFKISLINIKA-------HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
            V       +                 +   ++   LS+    V +DD    IG ++   
Sbjct: 365 RVMLKLAPKVAPVKAAVLPLMKKGEMGEKAAQLCRDLSES-FMVQYDD-AASIGKRYRRQ 422

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D +G P    V    + +  + +++R T  +E +++ +   + + + 
Sbjct: 423 DEIGTPFCFTVDHDTLENGTITVRYRDTAAQERINMSKAAEFLATKL 469


>gi|21229406|ref|NP_635328.1| threonyl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|34395862|sp|Q8PRY4|SYT_METMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|20907999|gb|AAM33000.1| Threonyl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 634

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/415 (13%), Positives = 126/415 (30%), Gaps = 45/415 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   + P G+     +   + +     GA+E+  P +   +        D +       
Sbjct: 233 SGNMRYYPKGRLVKSLLENYVLDVATEFGAMEVETPLMYDMNHPTLKKYLDRFPAR-QYS 291

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSRE 154
            + + + M            +      SY+NLP    ++    FR E R    G+ R R 
Sbjct: 292 IESDKRHMFLRFAACFGQFLMNHDMTISYKNLPLRMIEMTRYSFRKEQRGELVGLRRLRA 351

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F M D ++     + + + + + +   + +   +G+                        
Sbjct: 352 FTMPDMHTLCEDMDQAVNQFKEQYDLCISVLENVGIHINDY------------------- 392

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              E  +  ++DF +        +    ++   +VE W   +            D+L + 
Sbjct: 393 ---EVAIRFTRDFYE-ANKDLVVNMAKTVNKPVLVEMWDTRFFYFVLKFEFNFVDALAKA 448

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG--AMRVVAAVIESS 332
             +S   I+V        + +     ++  ADGK     +          R + A++E +
Sbjct: 449 SALSTVQIDV--------ENAERYDISYVNADGKLERPTVLHCSPSGAIERCIYALLEKA 500

Query: 333 HDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                      +  +       I    +      E++  +L               IG +
Sbjct: 501 AMETEEGKVPMLPVWLSPTQVRIVPISEKHIAFAEEVAKKLDFRVDVDDR---DLSIGKK 557

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHR-----LTGIREDMSLEEVINYASHR 441
              A     P  V++G K + +S + +  R         +  M+ EE+       
Sbjct: 558 VREAGREWVPYVVVIGDKEMEESTINVTIREESGQDKPKKVQMTPEELNARIKEE 612


>gi|71029934|ref|XP_764609.1| prolyl-tRNA synthetase [Theileria parva strain Muguga]
 gi|68351565|gb|EAN32326.1| prolyl-tRNA synthetase, putative [Theileria parva]
          Length = 461

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 139/376 (36%), Gaps = 67/376 (17%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           + S GIY+ LPLG + ++ +  I + E  + GA ++S P L    +   +G       ++
Sbjct: 74  KLSSGIYTTLPLGHRIINRITNIFKVELCKLGAAQLSFPLLNPEKVVSNTGN-TVLDNDL 132

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHI--KSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +++           T E++   + ++ +   S   LP   YQI  KFRDELR   G +R
Sbjct: 133 FKVSGNGSVEYRLSGTCEDLCNIVLKNEMIPLSKLQLPVLLYQINTKFRDELRVNEGKVR 192

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +EFLM D YS   + + S  +Y  +  S+  +   LGL    +      I  D   E  
Sbjct: 193 LKEFLMLDMYSLHSSEQCSDSTYTLVLESFANVLRLLGLNFATVNCNKNNIVSD---ELR 249

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           V                +     E        +  S V                      
Sbjct: 250 VQHS--------HNHDQNSNTELEVGHLFKFGTHYSDVYG-------------------- 281

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                                         F+ +  K   + M SYGIG  R++  +I +
Sbjct: 282 ----------------------------LKFEISGRKREKLYMNSYGIGINRLLNVLINN 313

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D  GI  P  +AP+ +++I+   +         +I   L K G  V +DD  E I ++
Sbjct: 314 YSDEFGIKLPQLIAPYDVTIIDSTTNGDGW-----EITRGLMKKGLTVLYDDRSETIKNK 368

Query: 392 FAVADLLGFPLQVIVG 407
              +  +G P  +I+G
Sbjct: 369 LLDSKRIGVPHILILG 384


>gi|125973847|ref|YP_001037757.1| histidyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|256004300|ref|ZP_05429282.1| histidyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281418008|ref|ZP_06249028.1| histidyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|166227964|sp|A3DF35|SYH_CLOTH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|125714072|gb|ABN52564.1| histidyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|255991734|gb|EEU01834.1| histidyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281409410|gb|EFB39668.1| histidyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|316939956|gb|ADU73990.1| histidyl-tRNA synthetase [Clostridium thermocellum DSM 1313]
          Length = 417

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 68/406 (16%), Positives = 119/406 (29%), Gaps = 25/406 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   I +  +  G  E+ +P  +  +L+        D   KEM    D+  +++   
Sbjct: 20  WHYIEKEIAKLCHDFGYKEIRIPVFEHTELFQRGVGDTTDIVQKEMYTFLDKGQRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  +  +    P   Y     +R E   +    R REF      +F    
Sbjct: 80  PEGTAGVVRSYIENGMASLPQPVKLYYNITAYRYENVQKG---RYREFHQFGVEAFGAPG 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT-----GETQVF 222
                            F RLG+K I +   S       +     L D       +    
Sbjct: 137 PSIDVEI---ISMVKLFFDRLGIKEISLNINSIGCPVCRAEYNKKLMDYLRPNLSKLCAT 193

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           C+  F   P+   +   +    + +               H E L   L          I
Sbjct: 194 CNTRFERNPLRIIDCKEESCKKITANAPALVENLCDDCKNHFEGLKAGL--ENLGIDYKI 251

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV---------AAVIESSH 333
           +   +      Y+  +        G    V  G    G +             A+     
Sbjct: 252 DKNIVRGL-DYYTKTVFEFVSDNIGAQGTVCGGGRYDGLVEACGGKPTPGIGFAMGLERL 310

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                         K   I I A         EK+   L K G     D MG+ + +Q  
Sbjct: 311 LMVMENQGIKFPESKKPDIFIAAIGDKANSYAEKMVYELRKEGLSAEKDLMGKSLKAQMK 370

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            AD LG    + +G   +   K  +K+  TG ++++SL+ +I+   
Sbjct: 371 YADKLGAKYSIALGDDEIESGKAVLKNMETGEQKEISLDTLISRLK 416


>gi|284931433|gb|ADC31371.1| glycyl-tRNA synthetase [Mycoplasma gallisepticum str. F]
          Length = 463

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/451 (11%), Positives = 124/451 (27%), Gaps = 43/451 (9%)

Query: 30  GMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWV 81
           G ++Q S    G+   + + PLG    +N+  ++ +    ++     +    + +  +W 
Sbjct: 16  GFVYQSSEIYNGLANSWDYGPLGALLKNNIKQLLLKHFVFSQPNMKLLDSSIILNPLVWQ 75

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            SG  D++   ++   +   +        E     I  +       L       +++ + 
Sbjct: 76  ASGHLDNFSDPLVDCKECKSRYRADKLIEELNDDSIKITENTDPSYLEQILVDKKVECKK 135

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSK-------HSYNKMFVSYLRIFH-------- 186
                +  +R    + K           +              F + LR           
Sbjct: 136 CEAANWTKIRKFNLMFKTFQGVVEDSLNTIYLRPETAQGIFINFKNILRTQRMKLPFGVA 195

Query: 187 ------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                 R  +        +          F+      E   +      DF I     + +
Sbjct: 196 QIGKAFRNEITPGNFIFRTREFEQFEIEYFLEPELVKEKFDWYINQIEDFLINKLLINKE 255

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            I       ++     + T D           E   ++ RG          +  +L    
Sbjct: 256 LIKRHEIAKDELAHYSSRTIDFQF-NFPHGWSELWGLAHRGNFDLTAHSNQSGKTLDYHN 314

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------DGKGIIWPDSVAPFKISLINI 354
                +       +    +G  R++ A++ + +      D                 + I
Sbjct: 315 EI---EKTKIIPDVIEPSLGIERILYAIVCAHYHVEQLADNDSREVLRLPISLSPYQLAI 371

Query: 355 KAHDQVCRDACEKIYARLSKV---GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                  +D   ++Y  L K+        +D     IG ++   D +G    +      +
Sbjct: 372 LPLVNKLKDQAYQLYLELLKISDTNLRFDFD-SAGSIGKRYRRYDAIGTKYCLTYDFDSL 430

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               V I+ R +  +  + + E+  +  +  
Sbjct: 431 EKGIVTIRERDSMEQIKLPISELKQWIRNNL 461


>gi|56963341|ref|YP_175072.1| histidyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|81678918|sp|Q5WHP4|SYH1_BACSK RecName: Full=Histidyl-tRNA synthetase 1; AltName:
           Full=Histidine--tRNA ligase 1; Short=HisRS 1
 gi|56909584|dbj|BAD64111.1| histidyl-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 426

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/415 (12%), Positives = 118/415 (28%), Gaps = 18/415 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        +  + +E        E+  P  +  +++        D   KEM   +DR 
Sbjct: 13  LPDDAAIWQYIEQVAKETCETYHYQEIRTPIFEHTEIFSRGVGDTTDIVQKEMYTFSDRG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
            +++   P     +   + +H        P   Y     FR E      + +  +F ++ 
Sbjct: 73  GRSLTLRPEGTAAVVRSYVNHKLYASPAQPTKLYYTGPMFRYERPQAGRMRQFVQFGVEA 132

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF---IVLADT 216
             S   +P+        +     ++        I    +S         E          
Sbjct: 133 LGSA--SPQLDAEVLALLIAICKKLGLVNLKLVINSLGDSES--RQAHREALIAHFKPSI 188

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDII--------SLNSIVEQWTAPYAATSDVHNEKLF 268
            E    C       P+   +   D            L+ + E+  A + +  +  +    
Sbjct: 189 DEFCSDCQMRLEKNPLRILDCKKDREHPLMATAPSILDYLNEESRAYFQSLKETLDLLNI 248

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             + +   V          F   +      + T     G+ + +     G     +  A 
Sbjct: 249 PYVVDPTLVRGLDYYNHTAFELLSTAPGFGAITTLCGGGRYNGLVQEFGGPETPGIGFAF 308

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +   +     +            ++  RL   G     D +G+++
Sbjct: 309 SIERFILAMKAENVDLPVPQSLDAYVVTLGDEASRLGPQLLQRLRDGGIRADKDYLGKKM 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +Q   AD       +I+G   ++  +  +K   TG +  +++ ++ ++   +  
Sbjct: 369 KAQLKAADRYQASYTIIIGEDEIAKQQALVKQMATGEQTVVAISDLTSFLQEQIR 423


>gi|304316662|ref|YP_003851807.1| glycyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778164|gb|ADL68723.1| glycyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 462

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 67/460 (14%), Positives = 144/460 (31%), Gaps = 62/460 (13%)

Query: 30  GMI---HQHSKGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADLWV 81
           G I    +   G+   + + PLG +  +NV      +  +     +      L + + WV
Sbjct: 18  GFIFPGSEIYGGLANTWDYGPLGVEFKNNVKKAWWSKFIQENQYNVGIDCAILMNPETWV 77

Query: 82  ESGRYDSYGKEMLRLA--------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
            SG    +   ++           D+  +  +     E ++       +K +  +     
Sbjct: 78  ASGHVGGFSDPLMDCKECKSRFRADKLVEDYLKEQGQEAIVDGWSNDKLKQFIEVNNVPC 137

Query: 134 QIQLKFRD-ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL---- 188
            +       ++R    + ++ + + +D+ S       +       F + LR   R     
Sbjct: 138 PVCGAHNFTDIRKFNLMFKTFQGVTEDSKSEIYLRPETAQGIFVNFKNVLRTTRRKIPFG 197

Query: 189 -------GLKSIPMRAESGPIGGDLSHEFIVLADTGE-------TQVFCSKDFMDFPIPS 234
                      I     +         E       GE        + FC    ++  +  
Sbjct: 198 IGQIGKSFRNEITPGNFTFRTREFEQMELEFFCKPGEDIEWFNYWKEFCMNWLLNLGLKK 257

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           EN  F D        ++  + Y+  +     +      E   ++ R       F      
Sbjct: 258 ENLRFRD------HSKEELSHYSNATTDIEYRFPFGWGELWGIADR-----TDFDLKRHM 306

Query: 295 SLP-MSATFKGA-DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW---------PDS 343
               +  T+      + +        +GA RV  A +  +++ + +              
Sbjct: 307 EHSGVDLTYFDPITNEKYIPYCIEPSVGADRVALAFLIDAYNEEEVEENDTRVVLKLHPM 366

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP K +++ +        D   K+Y  L K    V +D+ G  IG ++   D +G P  
Sbjct: 367 IAPIKAAVLPLSKK---LGDNAYKLYDDLRKE-FVVDYDETG-SIGKRYRRQDEIGTPYC 421

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +      ++D  V I+ R T  +  + + EV  Y   +  
Sbjct: 422 ITYDFDSLNDESVTIRDRDTMQQVRLKINEVKPYLESKLK 461


>gi|300717950|ref|YP_003742753.1| Histidyl-tRNA synthetase [Erwinia billingiae Eb661]
 gi|299063786|emb|CAX60906.1| Histidyl-tRNA synthetase [Erwinia billingiae Eb661]
          Length = 424

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/424 (14%), Positives = 132/424 (31%), Gaps = 27/424 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +  I+++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPAETVVWQRIEQILKQVLASYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    +  + 
Sbjct: 70  FEDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYV-GPMFRYERPQKGRYRQFHQM 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLA 214
            ++         +         +   L I   + L+ +     E+     D    F+   
Sbjct: 129 GVEVFGLQGPDVDAELIMMTARWWKALGISEHVKLELNSIGSLEARTNYRDALIAFLEQH 188

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD----- 269
                +  C +     P+   ++   DI +L +   + +    A S  H   L +     
Sbjct: 189 QDVLDED-CKRRMYTNPLRVLDSKNPDIQALLNAAPELSEYLDAESREHFAGLCELLDSA 247

Query: 270 --------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                    L        R +        G++ ++     + G   +       + G   
Sbjct: 248 GIAYTVNQRLVRGLDYYNRTVFEWVTTSLGSQGTVCGGGRYDGLVEQLGGRATPAVGFAM 307

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDV 379
                 ++                P +I  + + A  Q  + A  ++  ++        +
Sbjct: 308 GLERLVLLV-------QAVNPEFEPTRIVDVYVIASGQGVQSAAMQLAEQIRDADPTLKL 360

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             +  G     QFA AD  G  + +++G   V++ +V IK    G ++ ++  +     +
Sbjct: 361 MTNFGGGNFKKQFARADKWGARVALMLGEDEVANGQVTIKDLRNGEQQTLAQRDAAATLA 420

Query: 440 HRFS 443
               
Sbjct: 421 AMLK 424


>gi|269103274|ref|ZP_06155971.1| histidyl-tRNA synthetase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163172|gb|EEZ41668.1| histidyl-tRNA synthetase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 422

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/416 (13%), Positives = 118/416 (28%), Gaps = 24/416 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V   +++  +  G  E+ +P ++S  L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKVEGTVKQVISSYGYNEVRMPIVESTHLFKRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRSREFLM 157
             ++   P            +   Y      +Y     + +   + R R       E   
Sbjct: 75  GDSLTLRPEGTAGCVRSGIQNGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQFGVEVFG 134

Query: 158 KDAYSFDLTPEGSKHSYNKM---FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            +    D           +            + +G         +  I     H  ++  
Sbjct: 135 LNGPDIDAELIMMTARLWRELGIHEHVTLELNSIGSLEARAEYRTALIAFLEQHMEVLDE 194

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSLPE 273
           D            +D   P       D   L+  ++Q +   +A   ++ +         
Sbjct: 195 DAKRRMYTNPLRVLDTKNPEIQNILGDAPKLSEYLDQDSREHFAGLCELLDAAGIKYQVN 254

Query: 274 NKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            + V         +F       G + ++     + G   +       + G         +
Sbjct: 255 ERLVRGLDYYNRTVFEWVTDSLGAQGTVCGGGRYDGLVEQLGGKVTPAVGFAMGLERLVL 314

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGE 386
           +  + +   +     V              +    A  K+   L        V     G 
Sbjct: 315 LMETLEQTEVRRSVDVYMVTAG--------EGTLAAGMKLAEVLRSQIPDLRVMTHFGGG 366

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               QF  AD +G  + +++G   ++++ V +K    G +  M+ ++V    +   
Sbjct: 367 NFKKQFKRADNVGAVVALVLGENEIAENTVVVKDLRGGEQITMNQDDVAAKLAELI 422


>gi|332981512|ref|YP_004462953.1| histidyl-tRNA synthetase [Mahella australiensis 50-1 BON]
 gi|332699190|gb|AEE96131.1| histidyl-tRNA synthetase [Mahella australiensis 50-1 BON]
          Length = 420

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/401 (13%), Positives = 113/401 (28%), Gaps = 9/401 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V + IR      G  E+  P  +  +L+        D   KEM    D+ ++++   
Sbjct: 20  WQYVESFIRHWTALFGYKEIRTPVFEHTELFQRGVGDTTDIVQKEMYTFEDKGNRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  H       P   Y +   FR E      +    +F ++   S+  + 
Sbjct: 80  PEGTAGVVRAYIEHKLYAEAQPIKLYYLSPIFRYERPQAGRLREHHQFGVESFGSYGPSI 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +          ++ L +       +     +  P+      +++           C   +
Sbjct: 140 DAEIVDLAMSLLNDLGLKDLEIHINSIGCKQCRPVYHKALMDYLADRLDQLCDT-CRSRY 198

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSARG 281
              P+   +       ++ +               H +   D L       E      RG
Sbjct: 199 DKNPLRILDCKEKGCQAVLTDAPDIVDYLCDDCKKHFDSFQDYLSAMGYKYEIDPRIVRG 258

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           ++      F    +   S       G+   +     G         +             
Sbjct: 259 LDYYTRTVFEILSTDERSPGTICGGGRYDDLVEQCGGPSIPGAGFGMGLERLLLCMDSQG 318

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +   K   + I A  +        + + L K    V  D +   +  QF  AD L   
Sbjct: 319 IIIPVPKGPDLFIAAVGEQAYHYSIGLASMLRKRDISVEIDHVARSLKGQFKYADKLKAQ 378

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             +++GS  ++   V  K+  TG  + M L+ +        
Sbjct: 379 YVLVIGSDEMASGHVSCKNMSTGQEQRMELDNIAERLHSLL 419


>gi|20807682|ref|NP_622853.1| histidyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
 gi|32130121|sp|Q8RAI8|SYH_THETN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|20516230|gb|AAM24457.1| Histidyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
          Length = 417

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/399 (14%), Positives = 115/399 (28%), Gaps = 9/399 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  ++RE     G  E+  P  +  +L++       D   KEM    DR+ +++   
Sbjct: 20  WQYVENLMREICEFYGYKEIRTPGFEHTELFLRGVGESTDIVRKEMYTFNDRSGRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
                     F  H       P   Y I   +R E      +    +F ++   +   + 
Sbjct: 80  AEGTSPAVRAFIEHGLYAETQPTKLYYITPVYRYEKPQAGRLREHHQFGVEIFGAKSASA 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +    S     +  L + +     +             +  EF+      E    C   +
Sbjct: 140 DAEVISIAMTLLKKLGLNNLELRINSVGCPVCRKNYNKVLKEFLKEH-LDELCDDCKVRY 198

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR------VSARG 281
              P+   +   +    +       T         H E+L   L              RG
Sbjct: 199 EVNPLRVLDCKVESCRRVTGEAPLITDYLCDDCRNHFEELKKYLDAMGYDYIVDPRIVRG 258

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           ++      F        +       G+   +     G     V   +             
Sbjct: 259 LDYYTKTAFEIISKDIGAQGTVCGGGRYDGLIEECGGPSMPGVGFGMGIERLLLTLEQNG 318

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +   +   + I       +     +  +L   G  V  D M   + +Q   A+ L   
Sbjct: 319 IEIPKPEGPDLFIAYIGDEAKLFTFTLANKLRFNGLKVEIDHMERSLKAQMKYANKLNAK 378

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             V++G + +   KV++K+  TG   ++ ++E+     +
Sbjct: 379 FAVVIGEEELESKKVKLKNMATGEETEILIDEIEKAIKN 417


>gi|2147427|pir||S58522 glycine-tRNA ligase (EC 6.1.1.14) - Thermus aquaticus
          Length = 506

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/492 (15%), Positives = 145/492 (29%), Gaps = 77/492 (15%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAII--REEQNRTGAIEMSVPTLQSADL 79
           R G I Q S      +G+Y + PLG +  +N+      R    R     +    L    +
Sbjct: 15  RRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLV 74

Query: 80  WVESGRYDSYGKEMLRL---ADRNDKAMIYGPTHEEV----------------------- 113
              SG   ++   M+       R     +     EEV                       
Sbjct: 75  LHYSGHEATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMM 134

Query: 114 ---------MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM-KDAYSF 163
                    MT        S     +T  +       +LR   G      +L  + A   
Sbjct: 135 QAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGI 194

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
            +  +    + ++     +    +     I  R     +      E       GE + + 
Sbjct: 195 FVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWH 254

Query: 224 SKDFMD-FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG- 281
                +      E     + +       + +A YA  +     +      E + ++ R  
Sbjct: 255 RYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIANRTD 314

Query: 282 IEVG-----------HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            ++G                  ++S    A      GK     +     G  R V A++ 
Sbjct: 315 FDLGSHTKDQEALGITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLA 374

Query: 331 SSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVF 380
            +   + +              +AP K+++I +  +     +  +++ ARL  +G   V 
Sbjct: 375 EAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVL 434

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFV---SDSK------VEIKHRLTGIREDMSL 431
           ++D G  IG  +   D +G P  V V    +    D        V ++ R T  +  + +
Sbjct: 435 YEDTG-NIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHV 493

Query: 432 EEVINYASHRFS 443
           +E+  +   R  
Sbjct: 494 DELEGFLRERLR 505


>gi|313124951|ref|YP_004035215.1| glycyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
 gi|312291316|gb|ADQ65776.1| glycyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
          Length = 596

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 86/287 (29%), Gaps = 16/287 (5%)

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            D+     +         Y         +      E         ++    A+  E    
Sbjct: 292 VDMDRFRFRQHLAGERAHYSSDCWDAESEVDGDWIEIAGFSYRSDYDLSKHAEYSEEDYT 351

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             + + +           D+  L     ++        D   E+L +  P+        +
Sbjct: 352 VFRQYDEPKTVERAVVDPDMSVL---GPKFGGAAGDVKDA-LERLAERDPDAFDGDEVTV 407

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW-- 340
           EV    +         +   +  +G+     +     G  R V  ++  +++   +    
Sbjct: 408 EVDGETHTVETDVTNFAVEEQTINGEHITPHVVEPSFGVDRTVYTLLAHAYEEDEVDDEE 467

Query: 341 ------PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                    VAP  + +  + ++     D  ++I   L   G  V +DD G  IG ++  
Sbjct: 468 RTYLSLSPEVAPRDVGVFPLVSNVPELVDLADEIVDDLRAAGLSVVYDDSG-SIGRRYRR 526

Query: 395 ADLLGFPLQVIVGSKFVSDS---KVEIKHRLTGIREDMSLEEVINYA 438
            D +G P  + V    +       V ++ R +G +  + +  + +  
Sbjct: 527 QDEVGTPFCITVDRDGLESDGETTVTVRERDSGRQIRVPVSALADEL 573



 Score = 58.6 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G Y++ P G     NV    RE    + G +E+  PT+    ++  SG  D++   ++ 
Sbjct: 32  AGFYTYGPQGAALKSNVEDAWRERFTVQEGNLEIDAPTIMPEPVFEASGHLDTFDDMLVE 91

Query: 96  LADRNDKA 103
             +  +  
Sbjct: 92  CPECAESH 99


>gi|297544514|ref|YP_003676816.1| histidyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842289|gb|ADH60805.1| histidyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 418

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/402 (13%), Positives = 120/402 (29%), Gaps = 15/402 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  +IR+  +  G  E+  P  +  +L++       D   KEM    D+  +++   
Sbjct: 20  WQYVEELIRKICDDYGFREIRTPGFEHTELFLRGVGESTDIVRKEMYTFTDKGGRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F  H       P   Y I   +R E      +    +F ++   +   + 
Sbjct: 80  PEGTSPAVRAFIEHNLYAEAQPTKLYYITPVYRYERPQSGRLREHHQFGVEIFGAKSASA 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +    S     +  L + +     +    +        +  +F+        +  C    
Sbjct: 140 DAEVISVAMTLLKKLGLNNLELRINSVGCSACRKNYNKVLKDFL----KDNLEYLCDDCK 195

Query: 228 MDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEKLFDSLPENKRVSA----- 279
           + + I         + S   I +     T         H E+L   L             
Sbjct: 196 VRYEINPLRVLDCKVESCQRITKDAPLITDYLCDDCKNHFEELQKYLDVMGYDYMIDPRI 255

Query: 280 -RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RG++      F        +       G+   +     G     V   +          
Sbjct: 256 VRGLDYYTKTAFEIISKDIGAQGTVCGGGRYDGLIEECGGPSMPGVGFGMGLERLLITLE 315

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +   +   + I    +  +     +  +L   G  V  D+M   + +Q   A+ L
Sbjct: 316 QNGIEIPKPEGVDLFIAYVGEDAKLFTFALANKLRFNGLKVERDNMDRSLKAQMKYANKL 375

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                +++G + +  +KV++K    G   ++S++E+     +
Sbjct: 376 NAKFAIVIGEEEMKKNKVKLKDMRDGSEVEISIDEIEQRIKN 417


>gi|242398072|ref|YP_002993496.1| Histidyl-tRNA synthetase [Thermococcus sibiricus MM 739]
 gi|242264465|gb|ACS89147.1| Histidyl-tRNA synthetase [Thermococcus sibiricus MM 739]
          Length = 437

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/438 (14%), Positives = 132/438 (30%), Gaps = 34/438 (7%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYG 90
           I +  KG    LP        V   IRE     G  E+  PT +   L+   SG  +   
Sbjct: 7   IQRV-KGTRDLLPEDMIKRRYVFERIREVFEVYGFKEILTPTFEYTKLFELRSG--EEVV 63

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           +++    D+  + +   P     +  +F +  ++       +Y   +   +E +      
Sbjct: 64  EQLYAFEDKGGRNLSLRPDLTSSVARLFVNAFQTAPKPIKWYYITNMFRYEEPQSG---- 119

Query: 151 RSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLG----------LKSIPMRAES 199
           R REF             E        +  SYL    +             +   M    
Sbjct: 120 RLREFWQAGVELIGSSNIEADAEVIALLIESYLSTGLKEFTVNVGDRILLDEFAKMIGVK 179

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-----EQWTA 254
             IG     +     + GE      +  ++    ++     ++      V     E +T+
Sbjct: 180 DDIGLMRLIDKKDKMERGEFVKALQEFGLNEEDINKVFTLIELKGKPDDVLPKARELFTS 239

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGH----------IFYFGTKYSLPMSATFKG 304
             A       E+LF+ L          I+ G           +F       L + +   G
Sbjct: 240 EIAKEELKKIEELFELLKAYGIKDYALIDFGIARGFDYYTSIVFEAIADNDLGIGSIGGG 299

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
               +     G     A      +       +               +    ++   +  
Sbjct: 300 GRYDNLIEVFGGKPTPATGFAIGIERLIPILESKELLPEFKVGSDVFVAYIGNELEIKKK 359

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             ++   L K      +D  G ++G     A+ +   + +I+G + +S+ KV I+   +G
Sbjct: 360 AIEVTQTLRKANIKAEYDIQGRKLGKALDYANSIEVKVAIILGRRDLSEGKVTIRDMKSG 419

Query: 425 IREDMSLEEVINYASHRF 442
            ++ +++E ++       
Sbjct: 420 EQKQVAIESIVEEVKKLL 437


>gi|193216690|ref|YP_001999932.1| glycyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
 gi|193002013|gb|ACF07228.1| glycyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
          Length = 463

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/462 (15%), Positives = 145/462 (31%), Gaps = 45/462 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMIHQHS---KGIYS---WLPLGQKALDNVNAII-REEQNRTG 65
           E     EI +H  +  +G  +Q+S    G+ +   + PL     + +     RE  NR  
Sbjct: 8   EKKNIQEIINH--LKTSGFAYQNSEIYGGLVNTWDYGPLAVPMANAIKNYWIREFINRER 65

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTD------ 116
              +    + + ++W  SG  D++     E      R     I      E+  +      
Sbjct: 66  NFLIDSKIIMNPNVWKASGHLDNFADFLIENKNNQKRYRADHIVKELFPEINVEKATFQE 125

Query: 117 ---IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
              I +S +K Y      +  I+            +  S   +     +        K+ 
Sbjct: 126 LETIIKSRVKEYDGAKCDWSTIRPFNLMFRTEMGAISNSASQVYLRPETAQGIFVNFKNV 185

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE-----FIVLADTGETQVFCSKDFM 228
                        ++G            I      E     F  L            +  
Sbjct: 186 LRTTRAKLPFGIGQIGKSFRNEITPRDFIFRTREFEQMELEFFCLEQDANKFYEYWINKC 245

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
              + S     ++I       E+ +     TSD+     F    E   ++ RG       
Sbjct: 246 HSFVSSLGLKANNIRIRPHEKEELSHYSKGTSDIEYFFPF-GWGELLGIANRGNFDLSQH 304

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV---------IESSHDGKGII 339
              ++ S      +   DG      +    IG  R++ A+         + +      + 
Sbjct: 305 MKFSQES----LEYLQEDGSKVVPWVIEPSIGLDRLLLALLVDSYEVEDLGNDDKRTILH 360

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADLL 398
              ++AP+++++  +            +IY  L       + +D+ G  IG ++   D +
Sbjct: 361 LNYNIAPYQLAIFPLTK---ALAPKAREIYDELIDKSTIRLVYDESG-SIGKRYRRQDAI 416

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G P  + V  + +    V I+ R T  +  +++ E++NY + 
Sbjct: 417 GTPFALTVDHESLETGTVTIRERDTMKQIRINISEIVNYLNQ 458


>gi|160946147|ref|ZP_02093358.1| hypothetical protein PEPMIC_00109 [Parvimonas micra ATCC 33270]
 gi|158447670|gb|EDP24665.1| hypothetical protein PEPMIC_00109 [Parvimonas micra ATCC 33270]
          Length = 433

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 68/440 (15%), Positives = 137/440 (31%), Gaps = 39/440 (8%)

Query: 30  GMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS 88
           G I   +  G    LP  Q   DNV  II +   + G + +  P  +  ++ +  G  ++
Sbjct: 2   GFIKPSNVVGTMELLPNEQILFDNVKNIIEDTFKKRGFLPIDTPVFEKNEILLAKGGGET 61

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             +     ++  D ++ +  T          +   S  N PF  Y I   +R E   +  
Sbjct: 62  TKQIFKIDSESKDISLRFDLTVPLARY---VAQYFSDLNFPFRRYHIGKVYRGERNQKG- 117

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG---- 204
             R +EF   D           K+     ++ Y      +  K     +    I G    
Sbjct: 118 --RYKEFYQCDIDVIGNGKLDIKNDAELPYIIYEIFSKIINEKFAINFSNLKIINGLFEN 175

Query: 205 ---DLSHEFIVLADTGET-------QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ--- 251
              D   + + + D  E        +   +    D  +           S   I+E+   
Sbjct: 176 LGVDNKTDMLRIIDKIEKIGFEKVVEELKNTGLNDNNLEKITEFIKISGSNEEIIEKLNS 235

Query: 252 -------WTAPYAATSDVHNEKLFDSLPEN----KRVSARGIEV--GHIFYFGTKYSLPM 298
                  +        +V+N      +PE+         RG++   G ++    +    +
Sbjct: 236 LGIKNALFDKGVEELKEVYNCMKLFGIPEDCIKINLTITRGLDYYTGTVYETFLENYRQL 295

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            +   G    D      S  +  + +   +    +          +    I  + I    
Sbjct: 296 GSVCSGGRYDDLASNYTSQILPGVGISIGLTRLFYQLLDKNLFKEIKTNSIDALIIPM-- 353

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           + C D   K+  +    G  +       ++  + + AD L  P  +IVG    +++   +
Sbjct: 354 ENCYDYAIKLLNKFENSGKIIQIYFEDAKMKKKISYADKLNIPYIIIVGEDEKANNTYTV 413

Query: 419 KHRLTGIREDMSLEEVINYA 438
           K   TG +  +  E +I   
Sbjct: 414 KDLKTGEQSTVDFEGLIKLI 433


>gi|240047245|ref|YP_002960633.1| glycyl-tRNA synthetase [Mycoplasma conjunctivae HRC/581]
 gi|239984817|emb|CAT04804.1| Glycyl-tRNA synthetase [Mycoplasma conjunctivae]
          Length = 453

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/424 (13%), Positives = 143/424 (33%), Gaps = 30/424 (7%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTG--AIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + +  LG    +N+    ++    +   A  +    L +  +W  SG  D++     E  
Sbjct: 33  WDYGHLGVLLANNIKNFWQDFFINSQPHAYLIDTKILLNPKVWFASGHLDNFNDLLVENK 92

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
               R     +      ++  D      ++ + L   FY         +R    +  +++
Sbjct: 93  INKKRYRVDHLLEEIFPDLEVDKLSVEEQNAKLLEIKFYDNCQTDWSPIRQFNLLFETQQ 152

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS--IPMRAESGPIGGDLSHEFIV 212
            ++++          +       F + LR        +     +A    I          
Sbjct: 153 GVVENQKQSIYLRPETAQGIFINFQNILRSTRTKLPFAVGQIGKAFRNEITPGNFIFRTR 212

Query: 213 LADTGETQVFCSKDFMD--FPIPSENTD--------FDDIISLNSIVEQWTAPYAATSDV 262
             +  E +VFC     +  + +  E             D + L    E   A Y+  +  
Sbjct: 213 EFEQMELEVFCHPQDSNKIYQLYLEKVGNFLQQVGLKSDNVRLRHHQESELAHYSNATAD 272

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           +         E   ++ RG           KYS            +     +    +G  
Sbjct: 273 YEFNFGFGWGELYGIAHRGDFDLQTHQ---KYSGQKMDYLDLTTNQKIVPHVIEPSVGLD 329

Query: 323 RVVAAVIESSH------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           R++ +++E+S       D   + +   +AP+K++++ +            +I+  L    
Sbjct: 330 RLMLSILENSFEYEEENDRYLLKFNYKMAPYKVAVLPLVKKLSPQ---AYQIFENLLTNK 386

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               +++    IG ++   D +G P  +      ++D+ V I++R +  +E ++L+++++
Sbjct: 387 ISAIFEEAN-SIGKRYRQQDAIGTPFCITFDYDSLNDNSVTIRYRDSMQQERIALDKIVD 445

Query: 437 YASH 440
           + + 
Sbjct: 446 FLNK 449


>gi|108804179|ref|YP_644116.1| histidyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
 gi|123177396|sp|Q1AWC4|SYH_RUBXD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|108765422|gb|ABG04304.1| histidyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
          Length = 424

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/393 (13%), Positives = 105/393 (26%), Gaps = 19/393 (4%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIY 106
             D +    R+   R G  E+  P  + A+L+V S     D   KEM    D+  + +  
Sbjct: 28  LWDRLYDAARDLFRRYGYAEVRTPVFEEAELFVRSTGETSDIVRKEMFVFRDKAGRELAL 87

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +   +  H       P   +     FR E + +    R R+     A      
Sbjct: 88  RPEGTAGVVRAYVEHGLYKLAQPVKMWYFGPMFRHERQQKG---RYRQHTQIGAEVLGSG 144

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK- 225
                     +  +  R                         E     +   +++     
Sbjct: 145 DPLVDVEVVALLYAIHRSAGVREEVIHLNNLGDVETRRRYVPELRAFLERHRSELDPDSV 204

Query: 226 --------DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
                      D   P+      +   +   + +  A +    +   E L      ++R+
Sbjct: 205 ARIETNPLRTFDSKDPNTRAVLREAPLIGEYLSEEAAAHLRAVEEGLEALGIPYVRDERL 264

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RG++      F    +       +   G           +G   V      +  +   
Sbjct: 265 -VRGLDYYTSTVF---EAKSPVLGAQDTVGAGGRYNRLVEELGGPDVPGIGFGTGVERVL 320

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +    +     +    +    +       ++   L   G     D  G     QF  AD 
Sbjct: 321 LAARAAEPESALDAFFVTLSPEARLP-ALQLAEALRAEGLSCELDYAGRSPKGQFRQADR 379

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            G    V++G + +S     ++   +G    +S
Sbjct: 380 SGASYAVVLGEEELSGGFCTLRDMKSGEERRVS 412


>gi|289578234|ref|YP_003476861.1| histidyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
 gi|289527947|gb|ADD02299.1| histidyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
          Length = 418

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/402 (13%), Positives = 122/402 (30%), Gaps = 15/402 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  +IR+  +  G  E+  P  +  +L++       D   KEM    D+  +++   
Sbjct: 20  WQYVEELIRKICDDYGFREIRTPGFEHTELFLRGVGESTDIVRKEMYTFTDKGGRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F  H       P   Y I   +R E      +    +F ++   +   + 
Sbjct: 80  PEGTSPAVRAFIEHNLYAEAQPTKLYYITPVYRYERPQSGRLREHHQFGVEIFGAKSASA 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +    S     +  L + +     +    +        +  +F+        +  C    
Sbjct: 140 DAEVISVAITLLKKLGLNNLELRINSVGCSACRKNYNKVLKDFL----KDNLKYLCDDCK 195

Query: 228 MDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEKLFDSLPENKR------VS 278
           + + I         + S   I +     T         H E+L   L             
Sbjct: 196 VRYEINPLRVLDCKVESCQRITKDAPLITDYLCDDCKNHFEELQKYLDVMGYNYIIDPRI 255

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RG++      F        +       G+   +     G     V   +          
Sbjct: 256 VRGLDYYTKTAFEIISKDIGAQGTVCGGGRYDGLIEECGGPSMPGVGFGMGLERLLLTLE 315

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                ++  K   + I    +  +     +  +L   G  V  D+M   + +Q   A+ L
Sbjct: 316 QKGIEISKPKDVDLFIAYVGEEAKLFTFALANKLRFNGLKVERDNMDRSLKAQMKYANKL 375

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                +++G + + ++KV++K    G   ++S++E+     +
Sbjct: 376 NAKFAIVIGEEEMKENKVKLKDMRDGSEVEISIDEIEQRIKN 417


>gi|22299441|ref|NP_682688.1| histidyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
 gi|32130104|sp|Q8DHP7|SYH_THEEB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|22295624|dbj|BAC09450.1| histidyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
          Length = 428

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 126/403 (31%), Gaps = 25/403 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  I R+  +R    E+  P  +   L+        D   KEM    DR  +++   
Sbjct: 20  WQYLETIARQILDRAAYREICTPIFEQTPLFERGIGEATDIVSKEMYTFRDRAQRSLTLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  H    +      + +   FR E        R R+F            
Sbjct: 80  PEGTAGVVRAYIEHGLHSQGGVQRLWYLGPMFRYERPQSG---RYRQFHQLGVEVLGSAD 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-----TGETQVF 222
             +           L I   LGLK + +   S     D S     L D       +    
Sbjct: 137 PRADAEV---IAVALDILQALGLKQLTLMLNSVGDREDRSAYRQALVDYLTPYKADLDPD 193

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF---DSLPENKRVSA 279
             +     P+   ++      ++     +     +A S  H E++     +L    +++ 
Sbjct: 194 SQERLHRNPLRILDSKDPRTQAIVKEAPRLLDYLSARSRAHFEQVQSLLQALGIAYQINP 253

Query: 280 ---RGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
              RG++      F F    SL    T  G    DH V+            A  +E    
Sbjct: 254 ALVRGLDYYTHTAFEF-QDMSLGNEGTVCGGGRYDHLVEELGGPPTPAIGWAMGLERLIL 312

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                   +     + ++   A  +        +  +L   G  V  D  G   G Q   
Sbjct: 313 LLRDRPLPARNQPYLYMVTRGAAAERQGLI---LAQQLRHQGYTVDVDLSGSAFGKQVKR 369

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           AD +G  + +++G    +D  V++K   +G +  +  +E+++ 
Sbjct: 370 ADRVGATVCLVIGESEATDGTVQVKWLASGEQVLVPQQELLSE 412


>gi|224027144|ref|ZP_03645510.1| hypothetical protein BACCOPRO_03905 [Bacteroides coprophilus DSM
           18228]
 gi|224020380|gb|EEF78378.1| hypothetical protein BACCOPRO_03905 [Bacteroides coprophilus DSM
           18228]
          Length = 326

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +Y + + +   RD      ++ L         KG+  WLP G      +   +R  Q R 
Sbjct: 195 EYLVMLEEAKKRDHRKIGKEMDLFM-FSDTVGKGLPMWLPKGTALRLRLQDFLRRIQARY 253

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL--ADRNDKAMIYGPTHEEVMTDIFRSHI 122
              E+  P + +  L+V SG Y  YGK+  +        +     P +      I+++  
Sbjct: 254 DYQEVICPPIGNKLLYVTSGHYAKYGKDAFQPIHTPEEGEEYFLKPMNCPHHCMIYKNSP 313

Query: 123 KSYRNLP 129
           +SYR+LP
Sbjct: 314 RSYRDLP 320


>gi|313888744|ref|ZP_07822408.1| histidine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845302|gb|EFR32699.1| histidine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 435

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/429 (11%), Positives = 130/429 (30%), Gaps = 28/429 (6%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP  Q   + +  IIR+   + G + +  P ++ +++ +  G  ++  +     
Sbjct: 10  PGFMELLPKDQILFNEMKDIIRKNFEKHGFLPIDTPVIEKSEVLLAKGGGETEKQIYRFS 69

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL------------- 143
               D ++ +  T       +   +  S+    +   ++    + +              
Sbjct: 70  KGDTDMSLRFDLTVPLARYTVEHMNDLSFPFKRYQIGKVYRGEKAQKGRFREFYQCDIDT 129

Query: 144 --RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                  ++   EF +   ++F          +          F  LG++       +  
Sbjct: 130 IGMGELSLVNDAEFPVVIFHTFKDLGFTDFTIHLNNRKILKGFFSSLGIEDSMNVLRTVD 189

Query: 202 IGGDLSHEFI--------VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
               +  E +        +  D+GE  +   K              D  I      E   
Sbjct: 190 KLDKIGEESVLEELGENGIGRDSGEKILEFIKIKGSVD-EILEQLRDLKIKDEIFQEGLD 248

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHY 311
                   + +  + +   +     ARG++   G ++         + +   G   +D  
Sbjct: 249 ELTQVVGYMRDFGIDEDCFDIDLKIARGLDYYTGTVYETTLDNYPKIGSVCSGGRYEDLA 308

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                  +  + +   +    +         S     + L+ I   D +      K+ + 
Sbjct: 309 SYYTDKTLPGVGISIGLSRLFYQLNEAKIISSEEKSLVDLLIIPMDDCIHDGI--KLLSE 366

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G  V       ++  +F  AD       +++G + +   K  +K   TG +E+++ 
Sbjct: 367 LREKGVRVSVYTEFAKLKKKFKYADQTKVDYVIVLGEEEIKTRKYSLKDMKTGDQEEVTF 426

Query: 432 EEVINYASH 440
           +E++     
Sbjct: 427 DELVERFKK 435


>gi|326799118|ref|YP_004316937.1| glycyl-tRNA synthetase [Sphingobacterium sp. 21]
 gi|326549882|gb|ADZ78267.1| glycyl-tRNA synthetase [Sphingobacterium sp. 21]
          Length = 488

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/484 (11%), Positives = 142/484 (29%), Gaps = 64/484 (13%)

Query: 20  IASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQN--RTGAIEMSV 71
           + SH      G +   S        +Y +  LG +  +N+     +         + +  
Sbjct: 11  VISHAKE--YGFVFPSSEIYDGLSAVYDYGQLGAELKNNIKTYWWKAMVQLNENIVGIDS 68

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS------- 124
                  +W  SG  D +   M+   D   +        E+ +    +            
Sbjct: 69  AIFMHPKIWKASGHVDGFNDPMIDNKDSKKR-YRADQLIEDKIARYEKDGKTDKAVKLQA 127

Query: 125 ----YRNLPFTFYQIQLKFRDELRPRFGVMRSR----EFLMKDAYSFDLTPEGSKHSY-- 174
                 N         +    E+       ++     +F +  +       +GS+  Y  
Sbjct: 128 DLDAALNSDDLGRLKSIIEEHEIACPVSGTKNWTEVRQFNLMFSTQMGAMADGSEEVYLR 187

Query: 175 ---------------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                              +       ++G            I      E + +      
Sbjct: 188 PETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEVIARQFIMRMREFEQMEMQFFVRP 247

Query: 220 --QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             ++     + +  +        +            A YA  +     +      E + +
Sbjct: 248 GTELEWYNQWKETRLKWHLALKPNPSKYRYHDHVKLAHYANAAVDIEYEFPFGFKEVEGI 307

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            +R             +S      F     +++   +    IG  R+   ++ ++++ + 
Sbjct: 308 HSRTDFDLSQHQT---FSGRKLQYFDPEINQNYVPYVIETSIGLDRMFLTILCNAYEEED 364

Query: 338 ------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
                       +    ++AP K ++  +   D    +   ++   L K+  ++ +++  
Sbjct: 365 LSTDEKQDSRSVLHLHPALAPIKAAVFPLTKKD-GLPEKAREVMD-LLKIDYNIIYEEKD 422

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             IG ++   D +G P+ + V  + + D  V I+HR +  +E ++++++           
Sbjct: 423 A-IGKRYRRQDAIGTPICITVDHQSLQDDTVTIRHRDSMEQERVAIKDL-EKLLDGIVGW 480

Query: 446 RPVL 449
           +P+L
Sbjct: 481 KPLL 484


>gi|52081235|ref|YP_080026.1| histidyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52786615|ref|YP_092444.1| histidyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|319644798|ref|ZP_07999031.1| histidyl-tRNA synthetase [Bacillus sp. BT1B_CT2]
 gi|81690957|sp|Q65GR3|SYH_BACLD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|52004446|gb|AAU24388.1| histidyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52349117|gb|AAU41751.1| HisS [Bacillus licheniformis ATCC 14580]
 gi|317392607|gb|EFV73401.1| histidyl-tRNA synthetase [Bacillus sp. BT1B_CT2]
          Length = 424

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/404 (14%), Positives = 114/404 (28%), Gaps = 18/404 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I RE  +     E+  P  +  +L+        D   KEM   AD+  +++   
Sbjct: 20  WQYVEKIARETCHAYQYKEIRTPIFEHTELFSRGVGESTDIVQKEMYTFADKKGRSLTLR 79

Query: 108 PTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P         F  + + +    P   Y I   FR E        +  +F ++        
Sbjct: 80  PEGTASAVRSFVENKLFANPVQPTKLYYIGPMFRYERPQTGRYRQFYQFGIEA--IGSND 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE---FIVLADTGETQVFC 223
           P             Y +         I    +          E           E    C
Sbjct: 138 PAIDAEVIALAMSVYRKAGLSNLKLVINSLGDKES--RTAHREALIRHFEPRIDEFCSDC 195

Query: 224 SKDFMDFPIPSENTDFDD-------IISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENK 275
            K     P+   +   D          S+   + + +  Y A    +   +  +   +  
Sbjct: 196 QKRLRQNPLRILDCKKDRDHELLKTAPSILDYLNEESKAYFAKVQQYLTDIGIAFEVDPN 255

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V          F   +      + T     G+   +     G  A  +  A+       
Sbjct: 256 LVRGLDYYNHTAFEIMSNAEGFGAITTLAGGGRYDGLTEEFGGPKAPGIGFAMSIERLLA 315

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   V   +     I       +D    +  +L + G     D   +++  QF  A
Sbjct: 316 ALDAENVKVGADEGIDCYIVTLGDKAKDYSVSLLYKLREAGISAEIDYEQKKMKGQFKSA 375

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           D L      ++G   ++ +++ +K   TG ++ + L++ I +  
Sbjct: 376 DRLNAKYIAVLGEDELNQNQINVKDGKTGDQQAIGLDDFIRFLK 419


>gi|266622323|ref|ZP_06115258.1| glycine--tRNA ligase [Clostridium hathewayi DSM 13479]
 gi|288865966|gb|EFC98264.1| glycine--tRNA ligase [Clostridium hathewayi DSM 13479]
          Length = 200

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 17/205 (8%)

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
              +    Y+  +            E   V+ R              S    + F     
Sbjct: 3   HAPEELCFYSKATTDIEFLFPFGWGELWGVADRTDYDLTQHQ---NTSGQDMSYFDDEKK 59

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHD 358
           + +   +    +GA RV  A + S++D + I          +  ++AP KI ++ +    
Sbjct: 60  EKYIPYVIEPSLGADRVTLAFLCSAYDEEEIGEGDVRTVLHFHPAIAPVKIGVLPLSKK- 118

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +  EKIY  LS+   +  +DD G  IG ++   D +G P  V        D  V +
Sbjct: 119 --LNEGAEKIYTELSRY-YNCEFDDRG-NIGKRYRRQDEIGTPFCVTYDFDSEEDHAVTV 174

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +  + + E+ NY   +F 
Sbjct: 175 RDRDTMEQVRVPIAELKNYFEDKFR 199


>gi|163749556|ref|ZP_02156803.1| histidyl-tRNA synthetase [Shewanella benthica KT99]
 gi|161330666|gb|EDQ01603.1| histidyl-tRNA synthetase [Shewanella benthica KT99]
          Length = 424

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 65/418 (15%), Positives = 125/418 (29%), Gaps = 16/418 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        +  ++RE  +  G  E+  P ++S DL+  S G   D   KEM  
Sbjct: 10  GMNDILPTQSPLWQKLETVLRETVSAYGYSEIRTPIVESTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y +   FR E   +    +  +F
Sbjct: 70  FDDRNGDSLTLRPEGTASTVRAGNQHGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFNQF 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            ++         +      +                 + LG  +         I      
Sbjct: 129 GVEVYGIGTADVDAEVLMLSARLWEKLGISDHVTLELNTLGDPAERAAYREALIAYLEPF 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKL 267
           +  +  ++           +D   P       D   L   + E+  A ++   ++ +   
Sbjct: 189 KEQLDEESQRRMYTNPLRVLDTKNPEVQALLVDAPELMDYLGEETRAHFSHLCELLDAVG 248

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              +   + V         +F      SL    T   A G+   +     G     V  A
Sbjct: 249 IKYVINPRLVRGLDYYNRTVFE-WVTTSLGSQGTVL-AGGRYDGLVEQLGGKNTPAVGFA 306

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMG 385
           +              +        + + A     + A  KI   L +   G  V     G
Sbjct: 307 MGLERIVLMLETLELTDDIPATVDVYVTAMGDASKVAAIKIAQALRRELPGLRVMSHCGG 366

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHRF 442
                Q   AD  G  + +I+G   ++ ++V +K+ R    +  ++ + +  Y +   
Sbjct: 367 GNFKKQMKRADKSGALIALIIGEDELASNQVAVKYLREKKEQALVARDGLAAYIAELI 424


>gi|86608180|ref|YP_476942.1| histidyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556722|gb|ABD01679.1| histidyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 432

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/418 (15%), Positives = 120/418 (28%), Gaps = 34/418 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    V A  RE   R    E+  P L+  +L+  S     D  GKEM   + R 
Sbjct: 14  LPQEVRLWQQVEASAREILGRANYQEIRTPILELTELFARSIGSATDVVGKEMYSFSTRG 73

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +   P +   +   +  H           +     FR E        R R+F     
Sbjct: 74  EQEVSLRPENTAGVVRAYIQHGLQTAGDVQRLWYCGPMFRYERPQAG---RQRQFHQLGV 130

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT---- 216
                    +             +   +G +++ +R  S     D       L D     
Sbjct: 131 ELLGSRDPRADAEV---IALAWELLQAVGAENLSLRLNSLGDLQDRRAYRQALVDYLTPL 187

Query: 217 -GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--- 272
             +      +     P+   ++       +     +        S    E++   L    
Sbjct: 188 REKLDPDSQERLTRNPLRILDSKDPRTREIAEGAPKLPDYLGPESRAFFEQVQAHLQMLD 247

Query: 273 -----ENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                +   V          F       G++ ++     + G   +       + G    
Sbjct: 248 IPYQLDPYLVRGLDYYTDTAFEIVSPDLGSQSTVCGGGRYDGLVEELGGPSTPAVGWAVG 307

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++     G+    P  V           A  +       +I   L + G     D
Sbjct: 308 MERLVLLLQKKQGEAPPAPVEVYVISR-----GAKAEAQ---SLRIAQALRRAGFCTELD 359

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             G   G QF  A   G    V++G    +  +V++KH  TG ++ +   +++ Y + 
Sbjct: 360 LSGSAFGKQFKRASRSGATWAVVLGDAEAAAGEVQLKHLPTGQQQTLLQADLVKYLAS 417


>gi|284036607|ref|YP_003386537.1| glycyl-tRNA synthetase [Spirosoma linguale DSM 74]
 gi|283815900|gb|ADB37738.1| glycyl-tRNA synthetase [Spirosoma linguale DSM 74]
          Length = 502

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/456 (13%), Positives = 124/456 (27%), Gaps = 54/456 (11%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +Y +   G +  +N+  +  +   +     + +          W  SG  DS+   M+  
Sbjct: 42  VYDYGQNGVELKNNLKTLWWKAMTQLHDNVVGIDASIFMHPLTWKASGHVDSFNDPMIDN 101

Query: 97  ADRNDK-----------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            D   +                   E   T + +   +   +      +  +       P
Sbjct: 102 RDSKKRYRADQLLELKAEAYANAGDEAKSTALLQEMGRLLGDNDLEGVRNLIIAEGIKDP 161

Query: 146 RFGVMRSREFLMKD--------------AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
             G     E    +              +  +           N + V            
Sbjct: 162 VSGTDNWTEVRQFNLMFSTQVGSLAEDASLIYLRPETAQGIFVNFLNVQKTGRMKVPFGI 221

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVF---CSKDFMDFPIPSENTDFDDIISL--- 245
           +   +A    I        +   +  E Q F    ++             F   + L   
Sbjct: 222 AQIGKAFRNEIVARQFTFRMREFEQMEMQFFVRPGTEMHWYETWRDARMKFHQAVGLPAE 281

Query: 246 --NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                V +  A YA  +     K      E + + +R           ++          
Sbjct: 282 KLKFHVHEKLAHYANAAVDIEYKFPFGFREMEGIHSRTDFDLKAHQELSRKKQQYFDNDV 341

Query: 304 GADGKDHYVQMGSYGI----GAMRVVAAVIE------------SSHDGKGIIWPDSVAPF 347
                  Y     Y +    GA R+  AV+                +   +    ++AP 
Sbjct: 342 DPATGKPYGNYIPYVVETSVGADRLFLAVLCNAFTKETVGEGDQQKERTYLKLHPALAPI 401

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           K ++  +   D    +  E+I   L      V +++    IG ++   DL+G P  + V 
Sbjct: 402 KAAVFPLVRKD-GLPEKAEEIVKSLRSE-FRVVYEERDA-IGKRYTRQDLIGTPFCIAVD 458

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + + D  V I++R T  +  + + E+        S
Sbjct: 459 YQTLEDDTVTIRYRDTTEQIRIPVSELKARIGQEVS 494


>gi|90410874|ref|ZP_01218888.1| histidyl-tRNA synthetase [Photobacterium profundum 3TCK]
 gi|90328087|gb|EAS44398.1| histidyl-tRNA synthetase [Photobacterium profundum 3TCK]
          Length = 422

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/411 (14%), Positives = 120/411 (29%), Gaps = 14/411 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V   I++  +  G  E+ +P ++S  L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKVEGTIKQVVSAYGYNEIRMPIVESTHLFKRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF---RDELRPRFGVMRSREFLM 157
             ++   P            +   Y      +Y   +       + R R       E   
Sbjct: 75  CDSLTLRPEGTAGCVRAGIQNGLLYNQEQRLWYIGPMFRYERPQKGRYRQFHQVGVEVFG 134

Query: 158 KDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            +    D           +            + +G            I     H  ++  
Sbjct: 135 LNGPDVDAELIMMTARLWRELGINQHVRLELNSIGSLEARATYREALIAFLEQHLDVLDE 194

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDSLPE 273
           D            +D   P+      D   L+  ++    A +A   ++ +    +    
Sbjct: 195 DCKRRMHTNPLRVLDTKNPAVQEILVDAPKLSEYLDDDSKAHFAGLCELLDAAGIEYQVN 254

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            + V         +F +    +  + A      G  +   +   G  A   V   +    
Sbjct: 255 ERLVRGLDYYNRTVFEW---ITESLGAQGTVCGGGRYDGLVEQLGGKATPAVGFAMGVER 311

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGSQ 391
               +   +     +     +    +    A  K+  +L +   G  V     G     Q
Sbjct: 312 LVLLMETLELADVRRSVDAYVVTVGEGTMMAGMKLAEKLRENVPGLRVMNHFGGGNFKKQ 371

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           F  AD +G  + +++G   ++D+ V +K    G +  M+ +EV    +   
Sbjct: 372 FKRADNVGAAIALVLGENEIADNTVVVKDLRGGEQTTMAQDEVAAKLAELI 422


>gi|268323923|emb|CBH37511.1| histidyl-tRNA synthetase [uncultured archaeon]
          Length = 442

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 68/446 (15%), Positives = 143/446 (32%), Gaps = 38/446 (8%)

Query: 26  MLRTGMIHQH---------SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           MLR+    +          ++G   ++P   +    +   +R+  ++ G  E+  P+ + 
Sbjct: 1   MLRSLFFLRERLKEMRIERARGTRDFMPAEMQKRRIMETKMRDIADKWGYEEIRTPSFER 60

Query: 77  ADLWV-ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           A+L+  +SG  +    E+    D+  + +   P     +T ++ + +K        +Y  
Sbjct: 61  AELFTLKSG--EEILNELYEFKDKGGRHLALRPELTAPVTRMYVNELKMAPKPTKVYYFG 118

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLT------PEGSKHSYNKMFVSYLRIFHRLG 189
                +E +      R REF                    +   +    +      H   
Sbjct: 119 NCFRYEEPQ----KARYREFWQFGTEIIGSDRPESQAEIIALAYFIANSLCVKAELHVGH 174

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC---SKDFMDFPIPSENTDFDDIISLN 246
           +  I     +  +  +  ++ + L D GE +      S+      +  +     D+    
Sbjct: 175 VGLIREVLRTANVVENSINQVMRLIDKGERESVIAFLSEIGTRTELIDDLIYLVDLSGKE 234

Query: 247 SIVEQ-----WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           ++ E        +  AA +++                  GI  G  +Y G  + +     
Sbjct: 235 ALQEARDRNIIASDSAALNELEQLLELLEYYNVDYTLNLGIARGLDYYTGMVFEMYEVGG 294

Query: 302 FKGADGKDHYVQMGSYG--IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI----- 354
             GA  +             G     +       D    I+P      K   + +     
Sbjct: 295 KLGAQNQICGGGSYRLAALFGGDDTPSTGFAFGFDRLAEIYPLETDDLKSIKVVVVPIRA 354

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           K  D         I   L       + D MG  I +Q + A+ +     V+VG K V + 
Sbjct: 355 KEADPKVMKEAITIATTLRAF-FHTYIDVMGRSISAQLSYANSIPASFAVLVGKKEVEEG 413

Query: 415 KVEIKHRLTGIREDMSLEEVINYASH 440
           KV +++  +G +E + +EE +     
Sbjct: 414 KVTLRNLESGEQEKLGVEECVERIKK 439


>gi|45359177|ref|NP_988734.1| histidyl-tRNA synthetase [Methanococcus maripaludis S2]
 gi|46396586|sp|P60921|SYH_METMP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|45048052|emb|CAF31170.1| histidyl-tRNA synthetase [Methanococcus maripaludis S2]
          Length = 416

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 69/422 (16%), Positives = 126/422 (29%), Gaps = 23/422 (5%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSY 89
           M  +  KG   +LP   K    +   +R+  +     E++ PT +S +L   ++G  D  
Sbjct: 1   MFQKP-KGTRDFLPEEMKKRKTIEKKLRKVFDSYNFSEINTPTFESFELLSKKTG--DEI 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
             ++    D  D+ M   P     +   + +  K+    P   Y     FR E       
Sbjct: 58  RTQLFVFRDHGDREMGLRPELTSSVARFYINEFKN-TPKPVKLYYFTNCFRYENPQAG-- 114

Query: 150 MRSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP--------MRAESG 200
            R REF    +       P       N        I     +             +    
Sbjct: 115 -RYREFWQMGSELIGSKKPIADAEVVNMAIEGLKEINMDFEIHIGHLGVLKGVFEKYNLS 173

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS------LNSIVEQWTA 254
              G+     I   D    +   S+   +  I      F+ +        +  + E+   
Sbjct: 174 DDEGNEIRRLIDKEDMDGLKSVLSRLESEKNIEISKKVFEVLDLKGGKEVIPILKEKLAD 233

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             ++ + + N         +  V   GI  G  +Y G  + +                  
Sbjct: 234 FESSVAALENLDSILEFVPHDYVINFGIARGLDYYTGMVFEVYGKKEGAKQVCGGGRYDN 293

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                      A       D   +   D     +   +      ++    C KI   L  
Sbjct: 294 LIELFEGEPSPAVGFAYGFDRIMLNIDDFEVENESIFVVPVKSSEMLLKECLKIAKTLRD 353

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V  D MG ++      A+       +IVG   + D KV +K+  TG +  + L+++
Sbjct: 354 SGKSVEVDLMGRKLNKALNYANTKNIKKVLIVGENDIRDGKVSLKNMETGEQSLIELKDI 413

Query: 435 IN 436
           +N
Sbjct: 414 LN 415


>gi|297621744|ref|YP_003709881.1| Histidyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
 gi|297377045|gb|ADI38875.1| Histidyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
          Length = 480

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 124/419 (29%), Gaps = 34/419 (8%)

Query: 37  KGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYD 87
            G++  LP               V  +IRE   + G  E+  P L+  +L+        D
Sbjct: 7   PGVFDILPIDPKTPWKESHLWIYVEKVIRETAAQYGFQEIRTPILEKTELFQRGVGETSD 66

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
              KEM    DR  +++   P     +   +  +  S++     F+ I   FR E     
Sbjct: 67  IVSKEMYMFNDRGGRSLCLRPEGTAPVIRSYIENNLSHQVPIHKFFYIGPMFRYERAQAG 126

Query: 148 GVMRSREF------LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-- 199
              +  +F              ++              +   + + LG K   +      
Sbjct: 127 RYRQHHQFGAEVIGTQAPEQDAEVIDLLYTTYRKLGLQNLKVMINSLGDKECRLHFRHAL 186

Query: 200 ----GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                     LS E     D    ++  SK   D     +     D +S           
Sbjct: 187 KEYFSQHKKHLSEESRQRLDKNPLRILDSKSPQDQEFIEKAPSILDFLSHEVKTHFERVQ 246

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF---KGADGKDHYV 312
              T       +   L        R +        G + S+     +       G     
Sbjct: 247 EYLTFLEIPFAINPHLVRGLDYYNRTVFEVAAEELGAQNSIGGGGRYDSLIKELGGPDQP 306

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +G +G G  R++  +++            S       LI +    +  + AC K+   L
Sbjct: 307 ALG-FGTGIERIIQTLLKQ------EAPVPSAYRPTFFLIPLG---EKAKRACFKVLHFL 356

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            +   D   D  G ++G     A+ +G     +VG + +    VE+K+  TG      L
Sbjct: 357 RENSIDAQMDFTGRKLGKVMGYANQIGAKFVAVVGDQELETETVELKNMETGEAISAPL 415


>gi|89072703|ref|ZP_01159268.1| histidyl-tRNA synthetase [Photobacterium sp. SKA34]
 gi|89051523|gb|EAR56977.1| histidyl-tRNA synthetase [Photobacterium sp. SKA34]
          Length = 422

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/418 (12%), Positives = 120/418 (28%), Gaps = 28/418 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V   +++  +  G  E+ +P ++S  L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKVEGTVKQVISAYGYNEVRMPIVESTHLFKRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRSREFLM 157
             ++   P            +   Y      +Y     + +   + R R       E   
Sbjct: 75  GDSLTLRPEGTAGCVRAGIQNGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQVGVEVFG 134

Query: 158 KDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            +    D           +            + +G            I     H  ++  
Sbjct: 135 LNGPDIDAELIMMTARLWRELGINEHVRLELNSIGSLEARAEYRKALIAFLEQHLDVLDE 194

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSLPE 273
           D            +D    +     +D   L+  ++  +   +A   ++ +         
Sbjct: 195 DAKRRMYTNPLRVLDTKNAAIQEILEDAPKLSEYLDLESKEHFAGLCELLDAAGIKYQVN 254

Query: 274 NKRVSARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVA 326
            + V         +F       G++ ++     + G              + +G  R+V 
Sbjct: 255 ERLVRGLDYYNRTVFEWITESLGSQGTVCGGGRYDGLVEQLGGKATPSVGFAMGLERLVL 314

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDM 384
            +     D         +       + +             +  +L     G  V  +  
Sbjct: 315 LMKALEQDEVRRSVDVYMVTAGEGTLAVGMK----------LAEKLRTEVPGLRVMTNFG 364

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G     QF  AD +G  + +++G   ++++ V +K    G +  ++ +EV    +   
Sbjct: 365 GGNFKKQFKRADNVGAAVALVLGENEIAENSVVVKDLHGGEQTTIAQDEVAAKLAALI 422


>gi|13508093|ref|NP_110042.1| glycyl-tRNA synthetase [Mycoplasma pneumoniae M129]
 gi|2500997|sp|P75425|SYG_MYCPN RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|1674173|gb|AAB96130.1| glycyl-tRNA synthetase [Mycoplasma pneumoniae M129]
 gi|301633466|gb|ADK87020.1| glycine--tRNA ligase [Mycoplasma pneumoniae FH]
          Length = 449

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/448 (12%), Positives = 138/448 (30%), Gaps = 47/448 (10%)

Query: 24  KLMLRTGMIHQHS---KGI---YSWLPLGQKALDNVNA-----IIREEQNRTGAIEMSVP 72
           + + R G + Q S    G+   + + PLG      +        I+   N+   + +  P
Sbjct: 12  QYLKRYGFVFQSSELYNGLANSWDFGPLGAVLKQQIKTALYNFFIK---NKRDVLLIDTP 68

Query: 73  TLQSADLWVESGRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
            + +  +W  SG   ++   ++     +    + +     +  T      +         
Sbjct: 69  IILNEQIWKASGHLANFTDALVDCKSCKLRFRVDHLDEQIKSATQWNPKQVNCPNCKANN 128

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
           + +++            V   +  +     +        K               + G  
Sbjct: 129 WSEVRDFNLLFQTEIGVVNSEKRLVYLRPETAQGIFINFKQLLQLKKRPLPFGVAQFGKS 188

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-----------D 240
                  +         EF    +  E + FC+         S+                
Sbjct: 189 FRNEV--TPGNFLFRVREF----EQFEMEWFCNPQASLSVFESQQQAIAHFLFKVLQLNP 242

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            ++      +   A YA  +     +    L E   ++ RG           KY+     
Sbjct: 243 ALVKQYEYDKNELAHYANKTVDFLFQFPHGLRELWGLADRGTFDLEQHQ---KYAKKPLD 299

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH--------DGKGIIWPDSVAPFKISLI 352
            F G + +     +    +G  R+  A+I SS+          + +  P  + P +I ++
Sbjct: 300 FFDGENNEHFIPAVVEPSVGIERLFYALIVSSYQQEQLEGEMREVLRLPFHLCPEQIVVL 359

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +       ++  + ++  LS+    + + +    IG ++  AD +G    +    + + 
Sbjct: 360 PLVNK---LKETAQTLFEALSQTHWRIGF-ESAGSIGKRYRKADAIGTKFAITFDFESLE 415

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASH 440
           D  V I+ R +  +  + ++E+  + + 
Sbjct: 416 DQAVTIRERDSLKQVRVPIKELKAWFAQ 443


>gi|225181104|ref|ZP_03734551.1| histidyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225168301|gb|EEG77105.1| histidyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 416

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 127/410 (30%), Gaps = 21/410 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   K    +     E  +R G  E+  P  +  +L++       D   KEM    DR+
Sbjct: 11  LPDEIKTWRQLEHKAVEICHRFGYEEIRTPIFEHTELFLRGVGDVTDIVSKEMYTFKDRS 70

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++++   P     +   +          P   + I   FR +   R G  R R+F     
Sbjct: 71  ERSLTLRPEGTAPVARAYMESNLKGIPQPVKLFYIGPMFRYD---RPGAGRYRQFYQFGV 127

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F               V  L  F  LGL    +   S     D   E+          
Sbjct: 128 EVFGTNAPAIDAEV---IVLALDFFRSLGLSDFALHLNSVG-CPDCRQEYRSALQNELKD 183

Query: 221 VF------CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF---DSL 271
           +       CS+ F   P+   +   D        +        +    H E++    + L
Sbjct: 184 IVSTLCSDCSERFDKNPMRILDCKIDKCKEATKNLPSILDYLCSDCSAHFEQVKLLLNKL 243

Query: 272 PENKRVSAR---GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            E   ++ R   G++      F    ++  +    G  G+   +     G     +  AV
Sbjct: 244 GEEYVINPRLVRGLDYYTKTAFEIISTVGDTEQAIGGGGRYDNLVSTIGGPDTPGIGFAV 303

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                                  + +     V       I   L   G  V  D MG+ +
Sbjct: 304 GIERVLLAIKESDAYPIKGPTLDVFVAKAGNVPDYEVMPIIMDLRNAGFSVDMDYMGKSL 363

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +QF  A+       V++G + +   +V +++  TG +E + L+++    
Sbjct: 364 KAQFKTANKKDARYVVVLGEEEMQSKEVTLRNMTTGSQETVGLKQLAERL 413


>gi|144575262|gb|AAZ53435.2| glycyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
          Length = 455

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 65/467 (13%), Positives = 137/467 (29%), Gaps = 47/467 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGI---YSWLPLGQKALDNVNAIIREEQ 61
            +F+  L+E            +       Q   G+   Y +  LG     N+     +  
Sbjct: 8   NFFINQLRE------------LGFVFPSSQIYGGLANSYDYGHLGVLLRKNIENFWADFF 55

Query: 62  NRTG--AIEMSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPT------- 109
             +   A  +    L +  +W  SG  D++     E      R     ++          
Sbjct: 56  VNSNPNAFFIDSKILLNPKVWQASGHLDNFVDLLVENKINKKRYRVDHLFEEFFPEVEFE 115

Query: 110 ----HEEVMTDIFRSHIKSYRNL---PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
                E          +++ +     P  F  +   ++  +     ++  R    +  + 
Sbjct: 116 KLSQDEIQGYLSQIQLLENAKVEWASPKKFNLLFPTYQGIIEDEKTLLYLRPETAQGIFI 175

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
                  +  +   + ++ +    R  +        +          F+    +      
Sbjct: 176 NFKNLLRTTKNSLPLIIAQVGKSFRNEISPGNFIFRTREFVQLELEIFLKPDQSENFFQN 235

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             +   +F    +     + I LN   ++  A YA  +            E   +S RG 
Sbjct: 236 EIEKIKNFL--KKLGFAKNSIRLNYHKKEKLAHYAKATVDFEYNFNFGWGELIGISNRGD 293

Query: 283 EV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI---ESSHDGKG 337
                H    G K     SAT     GK     +    +G  R++ AV+         K 
Sbjct: 294 YDLKNHSEKSGEKLEFVDSAT-----GKKFLPHIIEPSMGLDRLMLAVLEECFCFDSVKN 348

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
             +           + +    +      EKI+  L            G  IG ++   D+
Sbjct: 349 RYFLKLPFILSPYKVAVLPLLKKFNFLAEKIWNELISQKISATLVTSG-SIGKRYYHQDV 407

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G    + +  K V +S V ++ R T  ++ + ++E+  +    F N
Sbjct: 408 IGTYFCITIDQKSVENSIVTLRFRDTTEQKTLKIDEITKFIKENFVN 454


>gi|303244124|ref|ZP_07330462.1| glycyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
 gi|302485509|gb|EFL48435.1| glycyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
          Length = 576

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 93/284 (32%), Gaps = 25/284 (8%)

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
              Y            R G       A+                            F+++
Sbjct: 307 MAHYAIDCWDAEIYTDRFGWIECVGIADRTDYDLKAHM---------NHSGVDLSVFVEY 357

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN-------EKLFDSLPENKRVSARGIE 283
             P E   +D  ++   + + +        +  N       EKL   L EN +   +  +
Sbjct: 358 DEPKEIETYDIELNYKVVGKVFKKDMKLVENALNNMNNTEIEKLVKELNENGKYILKIED 417

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH----DGKGII 339
               F   + Y        K   G+     +     G  R+   ++E ++    D   + 
Sbjct: 418 KE--FEILSDYLKINKTK-KKISGEKVLPHVIEPSYGIDRITYCLLEHAYNEEEDRTYLK 474

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
               VAP K+ +  +    +   +   +I   L K G    +DD G  IG ++   D +G
Sbjct: 475 LKPQVAPIKVGVFPLVNK-EGMAEIAMRIKDNLRKNGIIAEYDDSGA-IGRRYMRMDEVG 532

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P  + V  + + D  + I++R T  +  + ++EVINY  +   
Sbjct: 533 TPFCITVDGRTLEDGTITIRYRDTREQIRIKIDEVINYIKNNIK 576



 Score = 57.1 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 1/108 (0%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G   + PLG    +N+    R+         E+  PT+   ++   SG  D++   M+ 
Sbjct: 30  AGFVDYAPLGTMLKNNIINTWRKHYIVNEEFYEIESPTITPYEVLKASGHVDNFTDPMVE 89

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
             +  +         E +  D     ++    L   +     K   E 
Sbjct: 90  CKECLESFRADHIIEENIDIDTEGKTLEELDELIKKYNIRCPKCGGEF 137


>gi|144227446|gb|AAZ44148.2| glycyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
          Length = 455

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 65/467 (13%), Positives = 137/467 (29%), Gaps = 47/467 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGI---YSWLPLGQKALDNVNAIIREEQ 61
            +F+  L+E            +       Q   G+   Y +  LG     N+     +  
Sbjct: 8   NFFINQLRE------------LGFVFPSSQIYGGLANSYDYGHLGVLLRKNIENFWADFF 55

Query: 62  NRTG--AIEMSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPT------- 109
             +   A  +    L +  +W  SG  D++     E      R     ++          
Sbjct: 56  VNSNPNAFFIDSKILLNPKVWQASGHLDNFVDLLVENKINKKRYRVDHLFEEFFPEVEFE 115

Query: 110 ----HEEVMTDIFRSHIKSYRNL---PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
                E          +++ +     P  F  +   ++  +     ++  R    +  + 
Sbjct: 116 KLSQDEIQGYLSQIQLLENAKVEWASPKKFNLLFPTYQGIIEDEKTLLYLRPETAQGIFI 175

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
                  +  +   + ++ +    R  +        +          F+    +      
Sbjct: 176 NFKNLLRTTKNSLPLIIAQVGKSFRNEISPGNFIFRTREFVQLELEIFLKPDQSENFFQN 235

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             +   +F    +     + I LN   ++  A YA  +            E   +S RG 
Sbjct: 236 EIEKIKNFL--KKLGFAKNSIRLNYHKKEKLAHYAKATADFEYNFNFGWGELIGISNRGD 293

Query: 283 EV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI---ESSHDGKG 337
                H    G K     SAT     GK     +    +G  R++ AV+         K 
Sbjct: 294 YDLKNHSEKSGEKLEFVDSAT-----GKKFLPHIIEPSMGLDRLMLAVLEECFCFDSVKN 348

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
             +           + +    +      EKI+  L            G  IG ++   D+
Sbjct: 349 RYFLKLPFILSPYKVAVLPLLKKFNFLAEKIWNELISQKISATLVTSG-SIGKRYYHQDV 407

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G    + +  K V +S V ++ R T  ++ + ++E+  +    F N
Sbjct: 408 IGTYFCITIDQKSVENSIVTLRFRDTTEQKTLKIDEITKFIKENFVN 454


>gi|254506761|ref|ZP_05118901.1| histidyl-tRNA synthetase [Vibrio parahaemolyticus 16]
 gi|219550342|gb|EED27327.1| histidyl-tRNA synthetase [Vibrio parahaemolyticus 16]
          Length = 422

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/412 (14%), Positives = 122/412 (29%), Gaps = 16/412 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        +   ++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKLENTVKNVISAYGYNEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFL 156
             ++   P            +    R+    +Y +   FR E       R       E  
Sbjct: 75  GDSLTLRPEGTAGCVRSCIENSLINRDEQRLWY-MGPMFRHERPQKGRYRQFHQCGVEVF 133

Query: 157 MKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             +    D           +            + +G         +  I     H  I+ 
Sbjct: 134 GLEGPDVDAELIMMTARLWRELGIDKHVRLELNSIGSLEDRANYRTALIEFLEQHIDILD 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLP 272
            D            +D   P       D   L+  + E+    +A   ++ +    +   
Sbjct: 194 DDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSDYLGEESKEHFAGLCELLDAAGIEYTV 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             + V         +F +    +  + A      G  +   +   G  A   V   +   
Sbjct: 254 NERLVRGLDYYNRTVFEW---ITESLGAQGTVCGGGRYDGLVEQLGGKATPAVGFAMGLE 310

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGS 390
                +   +     +   + +    +    A  K+   L +   G  V     G     
Sbjct: 311 RLVLMLETLELTDVRRSVDVYMVTAGEGTMLAGMKLAETLREQVPGLRVMSHFGGGNFKK 370

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           QF  AD +G  + +++G   V+D+ V +K  + G ++ +S  +V+   +   
Sbjct: 371 QFKRADKVGAAVALVLGENEVADNTVVVKDLIGGTQDTLSQADVVAKLAELV 422


>gi|291570922|dbj|BAI93194.1| histidyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 425

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 61/412 (14%), Positives = 116/412 (28%), Gaps = 24/412 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V ++  E   R    E+  P  +   L+        D  GKEM    DR D+++   
Sbjct: 21  WQWVASVAEETLARGNYQEIRTPIFEPTALFERGIGEATDVVGKEMYTFCDRGDRSITLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +              + +   FR E        R R+F            
Sbjct: 81  PEGTAGVVRAYIERKLHANPGVQRLWYMGPMFRYERPQAG---RQRQFHQLGVEVLGSDD 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-----TGETQVF 222
             +      + V  L+    LG+ ++ +   S     D  +    L D     +GE    
Sbjct: 138 PRADVEVIAVAVDILKS---LGITNLHLNLNSVGDRTDRQNYRQALVDYLTPFSGELDQD 194

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--- 279
                   P+   ++  +    +              S  H E++   + E         
Sbjct: 195 SRDRLTRNPMRILDSKDERTQEITRNAPSILDYLGERSQSHFERVQYLIKELGISYTLNP 254

Query: 280 ---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F    S  + A      G  +   +   G G                
Sbjct: 255 RLVRGLDYYTHTAF-EIISDDLGAQATVCGGGRYDGLVQELG-GPSVPAVGWAIGLERLI 312

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            ++      P     + + +  +        +  +L + G  V  D  G     QF  AD
Sbjct: 313 ILLQQLHQPPQVTPQLYLVSRGEKAEANGLILAQKLRQAGLRVELDLSGSAFSKQFKRAD 372

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI---NYASHRFSNN 445
             G    +++G        V +K   +G +  ++  ++I        +   N
Sbjct: 373 RSGAGACLVLGDAEAIAGTVNLKWLKSGEQTVLNQVDLIGNVEDIKQQLITN 424


>gi|302871212|ref|YP_003839848.1| histidyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574071|gb|ADL41862.1| histidyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
          Length = 421

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 68/420 (16%), Positives = 123/420 (29%), Gaps = 23/420 (5%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEM 93
           P G K            V    RE     G  E+  PT +  +L+        D   KEM
Sbjct: 6   PKGTKDVLPEESYMWQYVENKFREICKLYGYQEVRFPTFEYTELFQRGVGETTDIVQKEM 65

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
               D+  +++   P        +F  H  + R +P  FY I   FR E           
Sbjct: 66  YTFLDKGGRSITLRPEGTASTARLFIEHGFASRPMPQRFYYIISAFRYENTQGGRFREFH 125

Query: 154 EFLMKDAYSFDL-TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           +F +++  S    T           F S       + + SI           +L   F  
Sbjct: 126 QFGIENFGSSSPVTDAEVISLAYNFFTSIGLDNITVNINSIGCPVCRKEYVKNLKEYFSA 185

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            +        C +     P+   +   ++   +     +           H EK+   L 
Sbjct: 186 NSQK--LCATCHQRLDKNPMRILDCKEENCKLVAKDAPKPIDYLCDDCKNHFEKVKTYLD 243

Query: 273 ENKRV------SARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                        RG++     +F      S    A   G    +   Q+G   I  +  
Sbjct: 244 SAMVAYKVDPFIVRGLDYYTKTVFEVVVTVSDKELAICGGGRYDNLIEQIGGPSIAGIGF 303

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              V       +               + +   + +      +I  +L   G     ++M
Sbjct: 304 AIGVERLLMLLEQNGLLPVKPQIPEVFVAVVGDNSI--RKAFEIANKLRFEGISTVIEEM 361

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              + SQ   AD LG    +I+G   ++    +I++  T   E + ++   +Y   +   
Sbjct: 362 SRSLKSQMKYADKLGCQFSIIIGDDEIAKGVCKIRNMRTSSEEIVEIKNACHYLKKQVQK 421


>gi|283782116|ref|YP_003372871.1| glycyl-tRNA synthetase [Pirellula staleyi DSM 6068]
 gi|283440569|gb|ADB19011.1| glycyl-tRNA synthetase [Pirellula staleyi DSM 6068]
          Length = 537

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 116/354 (32%), Gaps = 38/354 (10%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D A +   T + +  +       +   +PF   Q+   FR+E+ P+    RSREF   + 
Sbjct: 209 DAAFLRPETAQGIFVNFKNVCDSTRVRVPFGIAQVGKSFRNEITPKNFTFRSREFEQMEI 268

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F   P  S+  Y       ++ +  +GL +  ++        +   E +     G   
Sbjct: 269 EFFCH-PSTSREWYQYWRDRRMKWYTDMGLSTERLQL------REHHVEELSHYSCGTAD 321

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
           +  +  F+                    +E            H E   D   +       
Sbjct: 322 IEYAFPFL-------------PAGEYGELEGIAHRGDFDLRSHMEGKLDPNSKPDLKVEL 368

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------D 334
           G +         + S            +     +     GA R   A +  ++      D
Sbjct: 369 GPDG----KPKHRGSGKDLTYRDDLTNERFTPHVIEPSAGADRATLAFLCEAYHEDQAPD 424

Query: 335 GKGIIWPDSVAPFKISLINIKA------HDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
             G++    V      +  IKA            +  ++IY  L K   +VF+D+ G  +
Sbjct: 425 ENGVMQTRVVMKLHPRIAPIKAAVFPLVKKDGMPEKAQEIYRALKKR-YNVFYDEKGA-V 482

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G ++   D  G P  + V  + + D+ V I+ R T  ++ +S + V+     R 
Sbjct: 483 GRRYRRQDEAGTPFCITVDGQSLIDNTVTIRDRDTLEQKRISADAVLAEIETRI 536



 Score = 46.3 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 22/92 (23%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP--------- 72
           R G + Q S       G + + PLG +   N+      +   TG  E+S P         
Sbjct: 12  RRGFLFQSSEIYGGLNGFWDYGPLGVELKRNIKDAWWRDMV-TGHDELSTPAGAPAPYEM 70

Query: 73  ------TLQSADLWVESGRYDSYGKEMLRLAD 98
                  +    +W  SG +D +   M+   +
Sbjct: 71  TGLDCTIIMHPQVWKVSGHFDLFHDFMVDCRE 102


>gi|160893490|ref|ZP_02074275.1| hypothetical protein CLOL250_01041 [Clostridium sp. L2-50]
 gi|156864885|gb|EDO58316.1| hypothetical protein CLOL250_01041 [Clostridium sp. L2-50]
          Length = 416

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/422 (14%), Positives = 127/422 (30%), Gaps = 17/422 (4%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MI Q  +G   W     +    V A+ R    +    E+  P  +   L+        D 
Sbjct: 1   MITQAPRGTSDWFGDKMRTRTQVEAMARNLCEKFNIKEVITPVFEHTVLFQRGVGETTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+  +++   P         +  +       P   + I   FR E      
Sbjct: 61  VQKEMYTFVDKGGRSITLKPEGTAGAIRAYVENKLYAEPQPVKMFYITPAFRYEKPESGR 120

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           + +  +F ++   S +   E    +                  + +G            I
Sbjct: 121 LRQHHQFGVEFVGSPNPMAEVEVMTLVSTLIRQIGLSDAKLHINSIGCPKCKKVYNDALI 180

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSD 261
                HE  +     E  V      +D   P       D   +++ + E+  A +     
Sbjct: 181 SYLKGHEEGLCNTCKERMVKNPLRVIDCKEPGCKAIVKDAPRTIDYLCEECDAHFKELQR 240

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGI 319
           +  E       +   V         +F F  K  ++L     +      +   +     +
Sbjct: 241 LLTELEIPFEVDTGIVRGLDYYTKTVFEFVNKEGFTLCGGGRY-DNLVYEIDGKETQPSV 299

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G    +  ++         + P+     K   + +       +    K+   L   G  V
Sbjct: 300 GFGMGIERILYFLEKENINLAPE-----KPIDLYVGIMGDSAKAKAYKLVYDLRLAGYIV 354

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             D M   + +Q   A+ L     +I+G   +  +   IK+  TG + +++L+++ +   
Sbjct: 355 ETDYMNRSVKAQMKYANKLNARYTIIIGDNELETNTGRIKNMETGEQTEIALDQLASVLE 414

Query: 440 HR 441
            R
Sbjct: 415 ER 416


>gi|320100437|ref|YP_004176029.1| glycyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
 gi|319752789|gb|ADV64547.1| glycyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
          Length = 582

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 60/156 (38%), Gaps = 10/156 (6%)

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK--------GIIWPDSVAPFKISLI 352
             +   G+     +     G  R++  V+E ++  +                      + 
Sbjct: 429 EVERVHGEKIIPHVVEPSFGVERLLYVVLEHAYTVRDGKVVLRLPRHLAPYHVAVFPLVA 488

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
             +       +    IY RL K G    +DD    IG ++A AD +G P  V V  + + 
Sbjct: 489 GRRPEHARIVEVARDIYRRLVKKGFRAIYDD-DGSIGRRYARADEVGVPFAVTVDYQTLE 547

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           D  V ++ R T ++E +S++ +  Y   ++   +P+
Sbjct: 548 DGTVTVRDRDTALQERVSVDRLEEYFLEKY-GRQPL 582



 Score = 41.3 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 10/140 (7%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTG--AIEMSVPTLQSADLWVESGRYDSYGKEML 94
            G Y + P+G      +          +    +E+  P +    ++  SG  +S+   M 
Sbjct: 34  AGFYDFGPVGVLLKRGLIDAWLRTFVYSNDLVVEVETPMINPRIVFKASGHEESF---MD 90

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            + +      IY   H             S   +     +  +K      P  G    + 
Sbjct: 91  PVVECLKCGRIYRADHLIKEAAGVEVEGWSPEEMRKVIVEHGIKC-----PECGGDLGKP 145

Query: 155 FLMKDAYSFDLTPEGSKHSY 174
           F     +  ++ P   +  Y
Sbjct: 146 FYTLLLFKTEIGPYKGEVGY 165


>gi|309789595|ref|ZP_07684176.1| glycyl-tRNA synthetase [Oscillochloris trichoides DG6]
 gi|308228331|gb|EFO81978.1| glycyl-tRNA synthetase [Oscillochloris trichoides DG6]
          Length = 532

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 82/525 (15%), Positives = 155/525 (29%), Gaps = 111/525 (21%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G I   S      +G Y + PLG +  +N+ A         R     +    L +   
Sbjct: 10  RRGFIFPGSDIYGGLQGTYDFGPLGVELKNNLKAAWWRANVYERDDMEGLDAAILMNRLT 69

Query: 80  WVESGRYDSYGKEMLRLADRNDKA------------------------------------ 103
           W  SG  +++   ++       +                                     
Sbjct: 70  WKYSGHEETFTDPLVDCRACKGRWRADHIQGVCPNCGSKDLTESRPFNMMFKTQVGPVAD 129

Query: 104 -----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
                 +   T + +  +       + R LPF   QI   FR+E+ PR  + R REF   
Sbjct: 130 DTSFAYLRPETAQGIFVNFANVLATTSRKLPFGIAQIGKAFRNEINPRNFIFRVREFEQM 189

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP-----IGGDLSHEFIVL 213
           +   F + P      + +     L  +  +GL S  ++  + P          +++ +  
Sbjct: 190 EIEFFVM-PGTEDAWHQRWLDDRLAWWRSVGLSSDNLQVYTVPKADLAHYSKATYDLMYR 248

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE--QWTAPYAATSDVHNEKLFDSL 271
              G  ++       D+ + S + D  ++     ++E    TA            L   +
Sbjct: 249 FPIGFEELEGIASRSDYDLGSHSKDQANLGISAKVMENTDSTARLTYFDPETKRHLVPFV 308

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSAT-----------FKGADGKDHYVQMGSYGIG 320
            E      RG+       +  +   P+SA            F  + G++  +        
Sbjct: 309 IEPSAGVDRGVLALLTEAYDEEQIKPVSAERAQAVSDALAAFVKSVGRNEKLDPAQRDAI 368

Query: 321 AMRV---------VAAVIESSHD-------------------------GKGIIWPDSVAP 346
             R            A I +  D                            +    ++AP
Sbjct: 369 LERAEVISQDVAAHMAQIPALLDLPGASSIELSKKLRGQADPALDESYRTVLHLKPALAP 428

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
            K+++  +K +         +I   L   G     +DD G  IG  +   D +G P  + 
Sbjct: 429 IKVAVFPLKRNAPEIVATAREIRKTLQADGNMRTVYDDTGA-IGKLYRRQDEIGTPFCIT 487

Query: 406 VGSKFVSD-------SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           V    +           V ++ R T  +E + + E+  Y   R  
Sbjct: 488 VDFDTLGQGKDASLTGTVTVRDRDTMQQERVLMRELPEYFRDRLR 532


>gi|298675600|ref|YP_003727350.1| glycyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
 gi|298288588|gb|ADI74554.1| glycyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
          Length = 582

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 72/413 (17%), Positives = 144/413 (34%), Gaps = 76/413 (18%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R        LPF   QI   +R+E+ PR GV+R REF   +A  F
Sbjct: 159 YLRPETAQGMFINFLRLARYYREKLPFGVTQIGKSYRNEISPRQGVIRLREFTQAEAEIF 218

Query: 164 DLTPEGSKHSYNKMFVSYLRIF--HRLGLKSIPMRAESGPIGGDLSHEFIVLA------- 214
               + +   ++K   + L ++     G    P+R +     G ++HE++          
Sbjct: 219 IPPEDKTHPEFDKYADTVLNMYIEDDNGGVVRPIRLDDAVKEGYIAHEYLAYHIALTKDF 278

Query: 215 ---------------DTGETQVFCSKDFMDFPIPSENTDFDDIISL-------------- 245
                             +     + D  D  I S+   + + + +              
Sbjct: 279 LLRIGINPDKLRFRQHKKDEMAHYAADCWDAEIESDRFGWIETVGIADRTNYDLKAHTDT 338

Query: 246 -------------NSIVEQWTAP---------YAATSDVHNEKLFDSLPENKRVSARGI- 282
                           V Q+T           Y   +    EKL    PE        + 
Sbjct: 339 SGTELSIYREYEEPETVNQFTVKPDMSKLGPSYKGKAKTIAEKLKQLPPEELEKDNIQVN 398

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII--- 339
             G  +   +        T K   G+  +  +     G  R++  V+E +++ + I    
Sbjct: 399 VEGEEYTVPSDMVEFTEETVK-VSGETVFPHVIEPSYGIDRIIYCVLEHAYNKELINEDG 457

Query: 340 ---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                    + + V+P +++++ + +   + +     I AR  K G  V +DD G  IG 
Sbjct: 458 EEDYRIILRFKNEVSPIQVAVLPLMSKSDLIKP-ARDISARFRKKGLMVSYDDSG-TIGR 515

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++   D +G P  V +  + + D+ V I+ R T  +  +S + + +   +  +
Sbjct: 516 RYRRNDEIGTPYSVTIDYQTLEDNTVTIRDRDTMKQIRLSKDNIEDTVYNLIN 568



 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G Y + PLG      +  I R+    + G +E+  PT+   D++  SG    +   +  
Sbjct: 28  AGFYDYGPLGSTLKRRIEQIWRDMYVVQEGFMEIETPTIGIEDVFRASGHIGGFSDPLCE 87

Query: 96  LADRND 101
             +  +
Sbjct: 88  CEECGE 93


>gi|72080400|ref|YP_287458.1| glycyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
          Length = 456

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 65/467 (13%), Positives = 137/467 (29%), Gaps = 47/467 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGI---YSWLPLGQKALDNVNAIIREEQ 61
            +F+  L+E            +       Q   G+   Y +  LG     N+     +  
Sbjct: 9   NFFINQLRE------------LGFVFPSSQIYGGLANSYDYGHLGVLLRKNIENFWADFF 56

Query: 62  NRTG--AIEMSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPT------- 109
             +   A  +    L +  +W  SG  D++     E      R     ++          
Sbjct: 57  VNSNPNAFFIDSKILLNPKVWQASGHLDNFVDLLVENKINKKRYRVDHLFEEFFPEVEFE 116

Query: 110 ----HEEVMTDIFRSHIKSYRNL---PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
                E          +++ +     P  F  +   ++  +     ++  R    +  + 
Sbjct: 117 KLSQDEIQGYLSQIQLLENAKVEWASPKKFNLLFPTYQGIIEDEKTLLYLRPETAQGIFI 176

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
                  +  +   + ++ +    R  +        +          F+    +      
Sbjct: 177 NFKNLLRTTKNSLPLIIAQVGKSFRNEISPGNFIFRTREFVQLELEIFLKPDQSENFFQN 236

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             +   +F    +     + I LN   ++  A YA  +            E   +S RG 
Sbjct: 237 EIEKIKNFL--KKLGFAKNSIRLNYHKKEKLAHYAKATVDFEYNFNFGWGELIGISNRGD 294

Query: 283 EV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI---ESSHDGKG 337
                H    G K     SAT     GK     +    +G  R++ AV+         K 
Sbjct: 295 YDLKNHSEKSGEKLEFVDSAT-----GKKFLPHIIEPSMGLDRLMLAVLEECFCFDSVKN 349

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
             +           + +    +      EKI+  L            G  IG ++   D+
Sbjct: 350 RYFLKLPFILSPYKVAVLPLLKKFNFLAEKIWNELISQKISATLVTSG-SIGKRYYHQDV 408

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G    + +  K V +S V ++ R T  ++ + ++E+  +    F N
Sbjct: 409 IGTYFCITIDQKSVENSIVTLRFRDTTEQKTLKIDEITKFIKENFVN 455


>gi|126652268|ref|ZP_01724447.1| glycyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126591000|gb|EAZ85112.1| glycyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 470

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 57/441 (12%), Positives = 132/441 (29%), Gaps = 50/441 (11%)

Query: 40  YSWLPLGQKALDNV-----NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +N+        ++E ++  G   +    L +   WV SG   ++   M+
Sbjct: 42  WDYGPLGVELKNNIKKAWWQKFVQESEHNVG---IDAAILMNPKAWVASGHVGNFNDPMI 98

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
                  +        +  +       +            I+         +      R+
Sbjct: 99  DCKSCKARHRADKIIEDAALAKGDEIIVDGMTFDQMKETMIKYDVVCPDCGKDDFTDIRQ 158

Query: 155 FLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLK 191
           F +       +T   +   + +          F +  R                 R  + 
Sbjct: 159 FNLMFKTFQGVTESSTNEIFLRPETAQGIFVNFKNVQRSMRKRTPFGIAQVGKSFRNEIT 218

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  +          F    +  E   +  +   ++ +       +D + L    + 
Sbjct: 219 PGNFTFRTREFEQMELEFFCKPGEDLEWHSYWKEFCKNWLLN--LGMKEDSMRLRDHEDD 276

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             + Y+  +     K      E   ++ R            ++S            + + 
Sbjct: 277 ELSHYSNATTDIEFKFPFGWGELWGIADRTDYDLKQH---MEHSGEDFTYIDPVSNERYI 333

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCR 362
                  +GA RV  A +  ++D + +          +  ++APFK +++ +        
Sbjct: 334 PYCIEPSLGADRVTLAFLCDAYDEEELEGDDKRTVLRFHPAIAPFKAAVLPLSKK---LS 390

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D    ++A L K    V +D+  + IG ++   D +G P  +        D +V ++HR 
Sbjct: 391 DEATDVWAELRKA-FPVDFDES-QSIGKRYRRQDEIGTPFCITYDFDSKEDGQVTVRHRD 448

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +  +  M + EV  Y      
Sbjct: 449 SMTQVRMPISEVKAYIEKHLQ 469


>gi|291296240|ref|YP_003507638.1| glycyl-tRNA synthetase [Meiothermus ruber DSM 1279]
 gi|290471199|gb|ADD28618.1| glycyl-tRNA synthetase [Meiothermus ruber DSM 1279]
          Length = 508

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 124/375 (33%), Gaps = 56/375 (14%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  ++  +AD +    +   T + +  +       + R LPF   QI   FR+E+ PR  
Sbjct: 171 FKTQIGPVADEDSYGYLRPETAQGIFINFKNVLDATSRRLPFGVAQIGKAFRNEITPRNF 230

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P   +  + +   + L  +   G+    +R            
Sbjct: 231 IFRVREFEQMEIEYFVK-PGTDEEWHQRWLEARLAWWEAQGIPREQIRV----------- 278

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                                  +P E+       + + +    T  +     + N   +
Sbjct: 279 ---------------------LDVPKEDLSHYSKRTFDLMYNFPTLGFEEIEGIANRSDY 317

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     K  +   I+           S    A       +     +     G  R V AV
Sbjct: 318 DLGSHTKGQAELKIQAR---VLENHDSTAKLAVQDPETKEWFVPFVIEPSAGVDRGVLAV 374

Query: 329 IESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-D 378
           +  ++  + +              +AP K+++I +  + +       ++ A L  +G   
Sbjct: 375 LSQAYTREKLENGEERIVLKLKPHLAPIKVAVIPLAKNKEEITSYARRLKADLQALGFGR 434

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV---SDS------KVEIKHRLTGIREDM 429
           V ++D G  IG  +   D +G P  V V    +    D        V ++ R T  +E +
Sbjct: 435 VLYEDTG-NIGKAYRRHDEVGTPFCVTVDYDTIGKSQDGSTALQDTVTVRDRDTMQQERV 493

Query: 430 SLEEVINYASHRFSN 444
           +++E+  Y   R  +
Sbjct: 494 AVKELPQYLLERLKS 508


>gi|115372906|ref|ZP_01460211.1| prolyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|115370173|gb|EAU69103.1| prolyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 423

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 102/288 (35%), Gaps = 11/288 (3%)

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
               +      S+ K   SY  +   +   +  MR E        + EF+        + 
Sbjct: 52  IRPTSETIINRSFAKWIQSYRDLPLLINQWANVMRWEMRTRLFLRTTEFLWQEGHTCHE- 110

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
             ++   +         +         +   T   + T       L     E      + 
Sbjct: 111 --TEADAEKETLQMLEVYRTFAEDYMAMPVLTGRKSETERFAG-ALRTYSIEAMMQDKKA 167

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           ++ G     G  ++      F+G DGK H+V   S+G+ + R++  +I +  D  G++ P
Sbjct: 168 LQAGTSHNLGQNFAKAFDTQFQGRDGKQHHVWQTSWGV-STRLIGGLIMTHSDDAGLVVP 226

Query: 342 DSVAPFKISLINI-----KAHDQVCRDACEKIYARLSKVGCDVFWDDMG-EQIGSQFAVA 395
             +AP  + +I I      A      +    + A L + G +V  DD   +  G ++   
Sbjct: 227 PRLAPTHVVIIPILGKAADAEKTQVLEKVHAMAADLRRAGLNVLVDDDDTKSPGFKYNEH 286

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +++G  L+V +G K ++     +  R    +E + L + +  A     
Sbjct: 287 EVVGTCLRVELGPKDLAKDSCVMVRRDVRQKEFVPLAQAVEKARAMLD 334



 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 6/136 (4%)

Query: 61  QNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMT 115
               G      P L     L  E+   + +  ++  +      + ++ ++  PT E ++ 
Sbjct: 2   FKDLGHKNAYFPLLIPESYLKKEAEHVEGFNPQLAVVTHAGGAKLEEPLVIRPTSETIIN 61

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             F   I+SYR+LP    Q     R E+R R   +R+ EFL ++ ++   T   ++    
Sbjct: 62  RSFAKWIQSYRDLPLLINQWANVMRWEMRTRL-FLRTTEFLWQEGHTCHETEADAEKETL 120

Query: 176 KMFVSYLRIFHRLGLK 191
           +M   Y          
Sbjct: 121 QMLEVYRTFAEDYMAM 136


>gi|323490068|ref|ZP_08095289.1| glycyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
 gi|323396364|gb|EGA89189.1| glycyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
          Length = 458

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/440 (12%), Positives = 128/440 (29%), Gaps = 48/440 (10%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+     ++  +     + +    L +   WV SG   ++   M+   
Sbjct: 30  WDYGPLGVELKNNIKKAWWKKFVQESPYNVGLDAAILMNPKTWVASGHVGNFNDPMIDCK 89

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        + +        +             +   +            R+F +
Sbjct: 90  SCKTRHRADKLIEDALDAKGIELIVDGLSFDRMAELIQEHDVKCPTCGAQDFTEIRQFNL 149

Query: 158 KDAYSFDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAE------------- 198
                  +T   +   +        +FV+Y  +   +  K     A+             
Sbjct: 150 MFKTFQGVTEASTNEIFLRPETAQGIFVNYKNVQRSMRKKMPFGIAQIGKSFRNEITPGN 209

Query: 199 ----SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +          F    +  E   +      ++ +       +D + L    E   +
Sbjct: 210 FTFRTREFEQMELEFFCKPGEDLEWYAYWRDFSKNWLLN--LNMNEDNMRLREHDEDELS 267

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-SLPMSATFKGA-DGKDHYV 312
            Y+  +     K      E   ++ R       F              +      +    
Sbjct: 268 HYSNATVDIEYKFPFGWGELWGIADR-----TDFDLKRHMEYSGEDFNYIDPVTNERFVP 322

Query: 313 QMGSYGIGAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                 +GA RV  A +  ++             + +  ++AP+K +++ +        +
Sbjct: 323 YCIEPSLGADRVTLAFLVDAYHEEALENDDKRTVLKFHPALAPYKAAVLPLSKK---LAE 379

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               ++A L      V +D+  + IG ++   D +G P  +      V D +V ++HR +
Sbjct: 380 GATGVFADL-AKHFMVDYDES-QSIGKRYRRQDEIGTPFCITYDFDSVEDGQVTVRHRDS 437

Query: 424 GIREDMSLEEVINYASHRFS 443
             +  M + EV  Y      
Sbjct: 438 MEQTRMPIAEVQAYIEKHIQ 457


>gi|71893413|ref|YP_278859.1| glycyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
          Length = 456

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 65/467 (13%), Positives = 137/467 (29%), Gaps = 47/467 (10%)

Query: 5   KYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGI---YSWLPLGQKALDNVNAIIREEQ 61
            +F+  L+E            +       Q   G+   Y +  LG     N+     +  
Sbjct: 9   NFFINQLRE------------LGFVFPSSQIYGGLANSYDYGHLGVLLRKNIENFWADFF 56

Query: 62  NRTG--AIEMSVPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPT------- 109
             +   A  +    L +  +W  SG  D++     E      R     ++          
Sbjct: 57  VNSNPNAFFIDSKILLNPKVWQASGHLDNFVDLLVENKINKKRYRVDHLFEEFFPEVEFE 116

Query: 110 ----HEEVMTDIFRSHIKSYRNL---PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
                E          +++ +     P  F  +   ++  +     ++  R    +  + 
Sbjct: 117 KLSQDEIQGYLSQIQLLENAKVEWASPKKFNLLFPTYQGIIEDEKTLLYLRPETAQGIFI 176

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
                  +  +   + ++ +    R  +        +          F+    +      
Sbjct: 177 NFKNLLRTTKNSLPLIIAQVGKSFRNEISPGNFIFRTREFVQLELEIFLKPDQSENFFQN 236

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             +   +F    +     + I LN   ++  A YA  +            E   +S RG 
Sbjct: 237 EIEKIKNFL--KKLGFAKNSIRLNYHKKEKLAHYAKATADFEYNFNFGWGELIGISNRGD 294

Query: 283 EV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI---ESSHDGKG 337
                H    G K     SAT     GK     +    +G  R++ AV+         K 
Sbjct: 295 YDLKNHSEKSGEKLEFVDSAT-----GKKFLPHIIEPSMGLDRLMLAVLEECFCFDSVKN 349

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
             +           + +    +      EKI+  L            G  IG ++   D+
Sbjct: 350 RYFLKLPFILSPYKVAVLPLLKKFNFLAEKIWNELISQKISATLVTSG-SIGKRYYHQDV 408

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G    + +  K V +S V ++ R T  ++ + ++E+  +    F N
Sbjct: 409 IGTYFCITIDQKSVENSIVTLRFRDTTEQKTLKIDEITKFIKENFVN 455


>gi|238852664|ref|ZP_04643074.1| histidine--tRNA ligase [Lactobacillus gasseri 202-4]
 gi|238834810|gb|EEQ27037.1| histidine--tRNA ligase [Lactobacillus gasseri 202-4]
          Length = 428

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 70/424 (16%), Positives = 135/424 (31%), Gaps = 20/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    + + V  I R    R    E+  P+ ++ +++  S     D   KEM  
Sbjct: 8   GTVDILPAESGSWEKVETIARNFFKRANYREIRTPSFENYEVFSRSSGESSDVVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +   +  +      +  PF  Y I   FR E        R R
Sbjct: 68  FNDKGGRHIALRPEGTAGVVRAYVENKLYGPGVVKPFNVYYIDNTFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSF-DLTPEGSKHSYNKMFV--------SYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF   +P     +              +Y    + LG   +        +  
Sbjct: 125 EFHQIGVESFGSNSPLADVETIMMGHDLLAELGVKNYELHINTLGNAQVRKDYRDALVNY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               +  +  D+           +D     +     D   +   +++ +     T     
Sbjct: 185 FTPLKDQISEDSQRRLSMNPLRILDSKAEEDKQFLPDAPRIVDYLDEDSKKNFETITDML 244

Query: 265 EKL-FDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           E+L  + + ++  V       G IF F     +L  SA      G+ +++     G    
Sbjct: 245 EQLGINYVLDDDLVRGLDYYTGVIFEFMVEDKNLWESAITILGGGRYNHLVEEFDGPETP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E            ++   +     I    +       +I   L K G    +D
Sbjct: 305 AVGFGIGEERLMLVLKEQNPALFEDEGIDFFITNIGEGTEMKTVEIARSLRKQGFKAQYD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV--INYASH 440
              +++  QF  AD +     + +G+K + +  + IK    G   D+SLE++  +     
Sbjct: 365 VDQKKLKQQFRKADRVHAKFVITLGAKELENGVLNIKRLADGKTLDLSLEDLNDMKSVME 424

Query: 441 RFSN 444
           +  +
Sbjct: 425 KIED 428


>gi|224368341|ref|YP_002602504.1| prolyl-tRNA synthetase [Desulfobacterium autotrophicum HRM2]
 gi|223691057|gb|ACN14340.1| ProS [Desulfobacterium autotrophicum HRM2]
          Length = 504

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 65/427 (15%), Positives = 125/427 (29%), Gaps = 66/427 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +N+ + +      TG      P       L  E+   + + KE    
Sbjct: 38  GCMVIKPWGYALWENIVSTMDGMFKDTGIKNAYFPLFIPLSYLEKEAEHVEGFAKE---- 93

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                           V+T       +  + +P       L  R                
Sbjct: 94  --------------CAVVTHHRLEAGEDGKLVPAGKLTEPLIVR---------------- 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +      S ++   SY  +   L   +  +R E        + EF+     
Sbjct: 124 -------PTSETIIGESMSRWTSSYRDLPILLNQWANVVRWEMRTRIFLRTSEFLWQ--- 173

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS----LP 272
                             E T     +    + E    P        +E+   +      
Sbjct: 174 -----EGHTAHATEAEARERTMMMLDVYTRFVEEYLAMPVVRGRKTASERFPGAVDTVCI 228

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   + G  ++      F+ AD K+ +    S+G  + R++  +I + 
Sbjct: 229 EAMMQDKKALQAGTSHFLGQNFARSSDIRFQNADKKEEFAWTTSWGT-STRMIGGMIMTH 287

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLS-----KVGCDVFWDDM 384
            D  G+I P  VAP  + L+ I   ++      +    +   L+          V  DD 
Sbjct: 288 ADDDGVIMPPRVAPAHVVLLPIARKEEDQRKVMEYTRSLADALAVRTYHGSRIRVEIDDR 347

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT--GIREDMSLEEVINYASHRF 442
               G++       G PL+  +G + + +  V +  R    G +  +  E+ IN      
Sbjct: 348 D-TGGARAWDWIKKGIPLRAEIGPRDMENDCVFLGRRDEAPGKKVSLPREDFINTIDTIL 406

Query: 443 SNNRPVL 449
            + +  L
Sbjct: 407 DDIQNNL 413


>gi|150402786|ref|YP_001330080.1| histidyl-tRNA synthetase [Methanococcus maripaludis C7]
 gi|166228582|sp|A6VHK3|SYH_METM7 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|150033816|gb|ABR65929.1| histidyl-tRNA synthetase [Methanococcus maripaludis C7]
          Length = 418

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 66/421 (15%), Positives = 130/421 (30%), Gaps = 23/421 (5%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSY 89
           M  +  KG   +LP   K    +   +R+  +     E++ PT +S +L   ++G  D  
Sbjct: 3   MFQKP-KGTRDFLPEEMKKRKVIEKKLRKVFDSYNFSEINTPTFESFELLSKKTG--DEI 59

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
             ++    D  D+ M   P     +   + +  K+    P   Y     FR E       
Sbjct: 60  RTQLFVFKDHGDREMGLRPELTSSVARFYINEFKN-TPKPVKLYYFTNCFRYENPQAG-- 116

Query: 150 MRSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP--------MRAESG 200
            R REF    +       P       N        I     +             + +  
Sbjct: 117 -RYREFWQMGSELIGSNKPIADAEVINMAIEGLKEINMDFEINIGHLGVLKGVFEKYDLS 175

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS------LNSIVEQWTA 254
              G+     I   D    +   ++   +  I      F+ +        ++ + E+   
Sbjct: 176 DDEGNEIRRLIDKEDMDGLKSALNRIESEKNIEISEKVFEVLDLKGGREVISKLKEKLAE 235

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             ++ + + N         ++ +   GI  G  +Y G  + +                  
Sbjct: 236 FESSIAALENLDSILEFVPHEYIINFGIARGLDYYTGMVFEIYGKREGARQVCGGGRYDN 295

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                      A       D   +   D     +   +       +  + C KI   L +
Sbjct: 296 LIELFEGEPSPAVGFAYGFDRIMLNIDDFEVEEESIFVVPVKSSDMLLNECLKIAKTLRE 355

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V  D MG ++      A+  G    +IVG   + + KV +K+  TG +  + L+++
Sbjct: 356 AGKAVELDLMGRKLNKALNYANTKGIKKVIIVGENDILEGKVALKNMETGEQSLIELKDI 415

Query: 435 I 435
           +
Sbjct: 416 L 416


>gi|315231483|ref|YP_004071919.1| histidyl-tRNA synthetase [Thermococcus barophilus MP]
 gi|315184511|gb|ADT84696.1| histidyl-tRNA synthetase [Thermococcus barophilus MP]
          Length = 437

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 71/440 (16%), Positives = 127/440 (28%), Gaps = 49/440 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G    LP        V   IRE     G  E+  PT +   L+   SG  +   K++   
Sbjct: 11  GTRDLLPEDMAKRRWVFERIREVFEVYGFKEILTPTFEYTKLFQLRSG--EEVVKQLYAF 68

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +  +F +  ++       +Y   +   +E +      R REF 
Sbjct: 69  KDKGGRDISLRPDLTSSVARLFVNKFQNVPKPVKWYYITNMFRYEEPQSG----RLREFW 124

Query: 157 MKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                       E        M  SYL    +    +I  R         L  E     D
Sbjct: 125 QAGVELIGSANIEADAEVIALMIESYLSTGLKDFTVNIGDRVLLDEFAKMLGVE----DD 180

Query: 216 TGETQVFCSKDFM---------------DFPIPSENTDFDDIISLNSIVEQ----WTAPY 256
            G  ++   KD M               D  +       +     + I+ +    + +  
Sbjct: 181 IGLMRLIDKKDKMSREDFIAALKDFGLSDEAVEKVLFLIELKGKPDEILPKAYELFKSDK 240

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----------D 306
           A       E+LF+ L          I+ G    F    S+   A                
Sbjct: 241 AKEELKKIEELFELLKAYGVYDYALIDFGIARGFDYYTSIVFEAIAPNDLGIGSIGGGGR 300

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
             +     G     A      +       +      S        +     +   +    
Sbjct: 301 YDNLIEVFGGKPTPATGFAIGIERLIPILESKGLLPSFRLSPDVFVVYIGKELEVKAKAI 360

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAV----ADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +I   L K G    +D      G +       AD L  P+ VI+G + +++ K  I+   
Sbjct: 361 EITQALRKAGIKAEYDLQ----GRKLRKALEYADKLEIPVVVILGKRDLAEGKATIRDMA 416

Query: 423 TGIREDMSLEEVINYASHRF 442
           TG ++ +++E++        
Sbjct: 417 TGEQKSVAIEKIAKEVKEML 436


>gi|325681020|ref|ZP_08160552.1| histidine--tRNA ligase [Ruminococcus albus 8]
 gi|324107249|gb|EGC01533.1| histidine--tRNA ligase [Ruminococcus albus 8]
          Length = 440

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 73/436 (16%), Positives = 132/436 (30%), Gaps = 41/436 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MI +  KG    LP        V  +  E   + G  E+ VPT +   L++ S     D 
Sbjct: 3   MIQRP-KGTADMLPAQAYKWHTVEKLAAETAEQYGFKEIRVPTFEDTGLFIRSVGETTDV 61

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM  ++   D      P     +      +       P   Y I   FR E   +  
Sbjct: 62  VQKEMFTVSATGDDTFTLRPEGTAGVMRAVVENGLLNEAFPQKLYYITSCFRHENVQKG- 120

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSY----NKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
             R REF              +          +         +L + SI           
Sbjct: 121 --RLREFHQFGCEMVGSPDAKADADVISLAKSVMDRVGLQNIKLNINSIGCPTCRANYQK 178

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
            L   F    DT      C       P+   +        +               D H 
Sbjct: 179 ALREYFTPHRDT--LCDTCKDRLEKNPMRLLDCKSPICQGIAKDAPLIIDYLCEECDAHF 236

Query: 265 EKLFDSLP------ENKRVSARGIEV--GHIFYF-----GTKYSLPMSATFKGADGKDHY 311
           + L   L       +      RG++     +F F     G + ++     + G   +   
Sbjct: 237 KALQKYLSLMNIDFDINPRIVRGLDYYTRTVFEFIAEGIGAQSTVCGGGRYDGLLNELSG 296

Query: 312 VQMGS--YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
            Q+ +  +G+G  R++  + + + D             K   + I +  Q   D    + 
Sbjct: 297 KQVPALGFGMGLERLIMTMEQQNCDFMEA---------KTCDLYIASMGQAAADRAMSLA 347

Query: 370 ARLSKVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             L   G  V +D    G +   ++  AD +G    +++G   +     ++K+  +G + 
Sbjct: 348 MELRDEGYFVEYDLMGRGIKPQMKY--ADKIGSKFVIVIGDSELESGCAKLKNMASGEQT 405

Query: 428 DMSLEE-VINYASHRF 442
           D+ L+   +   S+  
Sbjct: 406 DIKLDNTFVENFSNAL 421


>gi|289423161|ref|ZP_06424976.1| histidine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
 gi|289156492|gb|EFD05142.1| histidine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
          Length = 420

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/411 (12%), Positives = 121/411 (29%), Gaps = 28/411 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            + +    R+  +  G  E+  P  ++ +L+        D   KEM    DR D+ +   
Sbjct: 20  WNYLETKFRQICSMYGYEEIRTPIFENTELFQRGVGDTTDIVQKEMYSFKDRGDRDLTLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  +       P   + I   FR E        +  +F ++   S   TP
Sbjct: 80  PEGTAGVIRAFIENKMFADAQPTKLFYITPCFRYERPQSGRQRQFHQFGVEAVGS--DTP 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                + +        +  +    SI       P+  +  ++ +      ++ V C    
Sbjct: 138 SLDAEAISLAMQFLGELGLKDLSVSINSVGC--PVCRESYNKLLKEYLEKKSDVLCDLCN 195

Query: 228 MDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEKLFDSLPENKRVSA----- 279
                         + +    ++               H EKL   L E           
Sbjct: 196 ERREKNPMRVIDCKVQTCQDNIKDIPLMADHLCEDCQDHFEKLKSYLDEMNIKYHVDKKI 255

Query: 280 -RGIEVG--HIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            RG++      F       G + ++     +     +      G  G+G    V  ++ +
Sbjct: 256 VRGLDYYKRTAFEIISNDLGAQSTVCGGGRY-DGLVEQIGGPEGYSGVGFGMGVERLLLT 314

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                  I   +     I  +      ++ +     I   L         D +     +Q
Sbjct: 315 LEANNIEIENPNKTDIYIVTL-----GEMAKLKSFGILKNLRDNHISADKDHLDRSFKAQ 369

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           F  ++ +     +++G + +   +  +K+  TG ++ + +  ++       
Sbjct: 370 FKYSNKINAKYTIVIGDEELEKDEATLKNMETGEQKSVKISNLVEEFKGLL 420


>gi|238854670|ref|ZP_04645000.1| histidine--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|260664387|ref|ZP_05865239.1| histidyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|282932939|ref|ZP_06338336.1| histidine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|313472207|ref|ZP_07812699.1| histidine--tRNA ligase [Lactobacillus jensenii 1153]
 gi|238832460|gb|EEQ24767.1| histidine--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|239529590|gb|EEQ68591.1| histidine--tRNA ligase [Lactobacillus jensenii 1153]
 gi|260561452|gb|EEX27424.1| histidyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|281302974|gb|EFA95179.1| histidine--tRNA ligase [Lactobacillus jensenii 208-1]
          Length = 426

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 63/408 (15%), Positives = 126/408 (30%), Gaps = 15/408 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            + V  I R+   +    E+  P+ +S +++  S     D   KEM    D+  + +   
Sbjct: 20  WEKVEQIARDFFKQANYREIRTPSFESYEVFSRSSGETSDVVEKEMYDFNDKGGRHIALR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLT 166
           P     +   +    K Y       + +          R    R REF      SF    
Sbjct: 80  PEGTAGVVRSYV-ENKMYGPDVVKPFNVYYIESMFRYERPQAGRQREFHQIGCESFGSNN 138

Query: 167 PEGSKHSYNKMFV--------SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           P     +              ++    + LG + +        I      +  +  D+  
Sbjct: 139 PLADIETIMMGNDLLNKLGVKNFELHINSLGNEVVRKAYHDALINYFTPVKDQLSEDSQR 198

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDSLPENKRV 277
             +      +D     +     D   +   ++    A +   +D  ++     + ++  V
Sbjct: 199 RLMKNPLRILDSKEEQDKQFLPDAPRIVDYLDDESKANFKFITDALDKLGIKYVLDDDLV 258

Query: 278 SARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                  G IF F      L  S T     G+ +++     G     V   + E      
Sbjct: 259 RGLDYYTGVIFEFMVADTDLWASPTTVLGGGRYNHLVEEFGGPETPAVGFGIGEERLMLV 318

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                  +         I    +       ++  +L   G  V +D   +++ +QF  AD
Sbjct: 319 LEKQNPELFADSGIDFFITNIGEGTALKSVELARKLRAQGQRVQYDVDQKKLKNQFKKAD 378

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     + +G K +++  V IK    G +  +S +E +N  S    N
Sbjct: 379 RVHAEFVITLGEKELAEGNVSIKRLADGKQIKLSWDE-MNNISEAMKN 425


>gi|20089821|ref|NP_615896.1| histidyl-tRNA synthetase [Methanosarcina acetivorans C2A]
 gi|32130123|sp|Q8TS62|SYH_METAC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|19914766|gb|AAM04376.1| histidyl-tRNA synthetase [Methanosarcina acetivorans C2A]
          Length = 413

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 72/413 (17%), Positives = 141/413 (34%), Gaps = 22/413 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   +LP        V +++R      G  E+  PT +  DL+  +SG  +    E+   
Sbjct: 8   GTRDFLPADTARRRYVESVMRNVVRNWGYSEIITPTFEHLDLFTLKSG--EGIVGELYNF 65

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + M   P     +  ++ + ++ +   P   +  +  FR E   +    R REF 
Sbjct: 66  TDKGGRDMTLRPELTAPVMRLYVNELQPFPK-PLKLFYFENCFRYERPQKG---RFREFW 121

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI--VLA 214
                        S      +  + L+     G   +   A    +   L  E +  V+ 
Sbjct: 122 QFGVELIGSGKSDSDAEVIALADALLKAVGIQGDMKLGNLAVIRTLLKGLEPEIVSKVMR 181

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              + +    +  ++  I +E     D+  L  +  ++  P       +  +L       
Sbjct: 182 LVDKKEYAGLESLLEE-IGAEEQLKSDLFHLIHLEGKYILPKVKEIVGNIPELVGFEKTL 240

Query: 275 KRVSARGIEVGHIFYFG---TKYSLPMSATFKGADGKDHYVQMG-----SYGIGAMRVVA 326
           K + A G++    F        Y+  +   +    G    V  G         G   V +
Sbjct: 241 KLLDAYGVDYSLDFGIARGLDYYTGMVFEVYAEGLGAQKQVCGGGSYQLIQLFGGGDVPS 300

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                  D    I P      K   + + +      +   K+ + L      V  D M  
Sbjct: 301 TGFGIGFDRIMEICPLVPPASKN--LVLVSKPATHIE-AVKVASELRNY-LPVQIDLMER 356

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              +QF+ A+ +     VIVG K +   K+ ++  ++G +E ++LEE+I   +
Sbjct: 357 NFKAQFSYANTINADYVVIVGEKELEAGKLTLRDMVSGEQELLTLEEIIEKIT 409


>gi|222446040|ref|ZP_03608555.1| hypothetical protein METSMIALI_01689 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435605|gb|EEE42770.1| hypothetical protein METSMIALI_01689 [Methanobrevibacter smithii
           DSM 2375]
          Length = 564

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 99/250 (39%), Gaps = 14/250 (5%)

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E I +AD G+  +     + +  +       +      ++V+   + +       + 
Sbjct: 317 GWVEIIGIADRGDYDLTSHSKYSNDDLNVFIEYDEPKTVKKTVVKPNLSKFGPIFKGDSP 376

Query: 266 KLFDSLPE---NKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-----DGKDHYVQMGSY 317
           K+  ++ E   ++   A   +  ++      Y L               G+     +   
Sbjct: 377 KVKQAIEEADVDEIKQAIENDGKYVVSLDKDYELTSDLLLFEDVEEEISGEKIVPHVIEP 436

Query: 318 GIGAMRVVAAVIESSHDG----KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             G  R+V +V+  S           +  SVAP ++ +  +    +  R+   +I  +L 
Sbjct: 437 SFGIDRIVYSVLLHSFKETDAKDYFKFAPSVAPVQVGIYPLVNK-EGPREIAIEITDKLR 495

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G  V +D  G  IG ++A AD +G PL + V    + D+K+ +++R +  +E ++++E
Sbjct: 496 ESGFKVEYDVSG-TIGKRYARADEIGIPLAITVDFDSLEDNKITVRNRDSEAQERIAIDE 554

Query: 434 VINYASHRFS 443
           + +Y    + 
Sbjct: 555 IKDYLEEYYK 564



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G   + PLG    +N+    R++     G  E+  PT+   ++   SG  D++   M +
Sbjct: 27  SGFTDYGPLGASLKNNIMQKWRKQYVSGEGFYEIEGPTVMPKEVLKASGHVDNFTDPMTK 86

Query: 96  LADRND 101
             +  +
Sbjct: 87  CEECGE 92


>gi|110802627|ref|YP_699210.1| histidyl-tRNA synthetase [Clostridium perfringens SM101]
 gi|123146002|sp|Q0SRP7|SYH_CLOPS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|110683128|gb|ABG86498.1| histidine--tRNA ligase [Clostridium perfringens SM101]
          Length = 415

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 121/415 (29%), Gaps = 12/415 (2%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        +   +R+     G  E+  P  ++ +L+        D   K
Sbjct: 4   QAQKGTKDMLPNDAYKWHYIEEKLRKISAEYGIREIRTPMFEATELFKRGVGETTDVVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P         F  +       P   +     FR E   +    R
Sbjct: 64  EMYTFEDKGGRSITLKPEGTAPAVRAFIENSLYADAQPTKMFYFTPCFRYEKMQKG---R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF       F             + +  L     +   S+ + +   P      +E +
Sbjct: 121 LREFHQYGIEVFGSQEASIDAEILSLVMRALTEDFGIKGLSLNINSLGCPKCRAKFNEAL 180

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---PYAATSDVHNEKLF 268
                      C      F                 IV++  +           H  KL 
Sbjct: 181 KQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSILDYICEECSDHFSKLK 240

Query: 269 DSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
             L            I  G  +Y  T + +          G+  Y+     G     +  
Sbjct: 241 AYLDVMGIEYNIDPQIVRGLDYYSKTVFEVIKDGLTVCGGGRYDYLVEEVDGPKTPAMGF 300

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +               +       + I +     +    K+   L K G     D +G+
Sbjct: 301 GLGLERLLLILDEEGIEIPEPVRCEVYIGSMGDRAKLEAMKLAFNLRKSGIKAEIDHLGK 360

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE--EVINYAS 439
            + +Q   A+ +G     ++G   + ++K++IK    G + ++SL+  E++N   
Sbjct: 361 SVKAQMKYANKIGAKYTFVIGDSEIEENKIKIKRMSDGEQFEVSLDINEIVNIVK 415


>gi|189219251|ref|YP_001939892.1| glycyl-tRNA synthetase (class II) [Methylacidiphilum infernorum V4]
 gi|189186109|gb|ACD83294.1| Glycyl-tRNA synthetase (class II) [Methylacidiphilum infernorum V4]
          Length = 457

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 59/457 (12%), Positives = 132/457 (28%), Gaps = 58/457 (12%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADL 79
           R G+I   S       G++ + PLG +   N+     +     RT  + +    L + ++
Sbjct: 16  RRGIIFPSSEIYGGINGVWDFGPLGVELKRNIKESWWKTMTQLRTDVVGLDGSILMNREV 75

Query: 80  WVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEE-VMTDIFRSHIKSYRNLPFTFYQI 135
           W  S   D +     +      R     +   +              +      F     
Sbjct: 76  WKASTHEDQFVDWFVDCKVCRARFRLDHLKESSCPLKPSKHPGECGGELTEPRRFNLLFK 135

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
                 E                   +        K+      +       ++G      
Sbjct: 136 TYVGPLEEEG--------ALTYLRPETAQSIFVQFKNVLESSRMKIPFGIAQIGKAFRNE 187

Query: 196 RAESGPIGGDLSHEFI-----VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                 I      E +     +  DTG  +                    + I L  + E
Sbjct: 188 VNPRNFIFRSREFEQMELEYFIPPDTG-FEYIEQWKEERIAWYESIGIAREHIHLRDVPE 246

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGK 308
              A Y+     ++ +        +     GI     F       +S      +      
Sbjct: 247 SERAFYSRK--TYDLEYDFPFGRQELE---GIAYRTDFDLKQHAIFSGKSMEYYDEERKC 301

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIK 355
            +   +     G  R + A++  S+  + II             +   +AP KI +  + 
Sbjct: 302 KYIPHVVEPSAGVDRTLLALLCESYREEEIIDEGGKKEKRVVLGFTPKIAPIKIGVFPLL 361

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS--- 412
            +        + I++ L K+    F+D+ G  IG ++   D +G P  V V  + +    
Sbjct: 362 KNKIELVQKAQAIFS-LLKIHFKSFYDESGA-IGRRYRRMDEIGTPFCVTVDFETLEGVR 419

Query: 413 -------DSKVEIKHRLTGIREDMSLEEVINYASHRF 442
                     V +++R +  ++ +++++++++   + 
Sbjct: 420 EGKLAGKKDTVTVRYRDSMKQDRIAVDDLVDFFREKI 456


>gi|18310916|ref|NP_562850.1| histidyl-tRNA synthetase [Clostridium perfringens str. 13]
 gi|32130127|sp|Q8XJ27|SYH_CLOPE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|18145598|dbj|BAB81640.1| histidine-tRNA ligase [Clostridium perfringens str. 13]
          Length = 415

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 65/415 (15%), Positives = 121/415 (29%), Gaps = 12/415 (2%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           Q  KG    LP        +   +R+     G  E+  P  ++ +L+        D   K
Sbjct: 4   QAQKGTKDMLPNDAYKWHYIEEKLRKISAEYGIREIRTPMFEATELFKRGVGETTDVVQK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P         F  +       P   +     FR E   +    R
Sbjct: 64  EMYTFEDKGGRSITLKPEGTAPAVRAFIENSLYADAQPTKMFYFTPCFRYEKMQKG---R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF       F             + +  L     +   S+ + +   P      +E +
Sbjct: 121 LREFHQYGIEVFGSQEASIDAEILSLVMRALTEDFGIKGLSLNINSLGCPKCRAKFNEAL 180

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---PYAATSDVHNEKLF 268
                      C      F                 IV++  +           H  KL 
Sbjct: 181 KQYLKENYDNLCETCKTRFEKNPMRIIDCKEKRCKEIVKEAPSILDYICEECSDHFSKLK 240

Query: 269 DSLPENKRVSAR--GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
             L            I  G  +Y  T + +          G+  Y+     G     +  
Sbjct: 241 AYLDVMGIEYNIDPQIVRGLDYYSKTVFEVIKDGLTVCGGGRYDYLVEEVDGPKTPAMGF 300

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +               +       + I +     R    K+   L K G     D +G+
Sbjct: 301 GLGLERLLLILDEEGIEIPEPVRCEVYIGSMGDRARLEAMKLAFNLRKSGIKAEIDHLGK 360

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE--EVINYAS 439
            + +Q   A+ +G     ++G   + ++K++IK    G + ++SL+  E++N   
Sbjct: 361 SVKAQMKYANKIGAKYTFVIGDSEIEENKIKIKRMSDGEQFEVSLDINEIVNIVK 415


>gi|303238651|ref|ZP_07325184.1| histidyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302593770|gb|EFL63485.1| histidyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 417

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 65/405 (16%), Positives = 123/405 (30%), Gaps = 23/405 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V   I E  +  G  E+ +P  +  +L+        D   KEM    D+  +++   
Sbjct: 20  WQYVEKKISELCSNFGYKEIRLPVFEHTELFQRGVGDTTDIVQKEMYTFMDKGGRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  +  +   +P   Y     +R E   +    R REF       F    
Sbjct: 80  PEGTAGVVRSYIENGMASLAMPIKLYYNITAYRYENVQKG---RYREFHQFGVECFGSNG 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCSK 225
                            F RLG+K + +   S   P      ++ ++          C  
Sbjct: 137 PLVDVEI---ISMLSMFFERLGIKDVELNINSIGCPKCRGEYNKKLLEFFKPNLDKLCGT 193

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN----------K 275
               +             +     +   A      +    K F+ L E            
Sbjct: 194 CKTRYERNPLRIIDCKEETCKIYTKDAPALVDNLCE-DCSKHFEGLKEGLENLGIKYNID 252

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           +   RG++      F    S  + A      G  +   +   G      +   I      
Sbjct: 253 KNIVRGLDYYTKTVF-EFVSKNIGAQGTVCGGGRYDGLIEECGGNQTPGIGFAIGIERLL 311

Query: 336 -KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                    +   +   + I    +  +   +K+  ++ + G     D MG  + +Q   
Sbjct: 312 LVMESQGIEIPKAEAIDVYIACIGEQAQKYAQKLVYKIRQEGFSAETDLMGRSVKAQMKY 371

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           AD LG    +++G   V  +K  +K+ LTG  +D+SL+ +I    
Sbjct: 372 ADKLGAVYSLVLGDTEVESNKAVLKNMLTGETKDISLDTLIERLK 416


>gi|256811168|ref|YP_003128537.1| histidyl-tRNA synthetase [Methanocaldococcus fervens AG86]
 gi|256794368|gb|ACV25037.1| histidyl-tRNA synthetase [Methanocaldococcus fervens AG86]
          Length = 413

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 69/417 (16%), Positives = 125/417 (29%), Gaps = 29/417 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL-WVESGRYDSYGKEMLRL 96
           G   +LP   K    +   +RE   R G  E+  PT +S +L   ++G  +   K++   
Sbjct: 7   GTRDFLPEEMKKRRFIENKLREVFERYGYKEILTPTFESFELIAKKTG--EEIRKQLYVF 64

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   + M   P     +   + + +K+    P   Y     FR E        R REF 
Sbjct: 65  KDHGGREMALRPEMTSPVVRFYLNELKN-LQKPLRLYYFANCFRYERPQAG---RFREFW 120

Query: 157 MKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP--------MRAESGPIGGDLS 207
                      P       N      + I     +             +           
Sbjct: 121 QMGCELIGCENPIADAEVLNLAMDGLININLDFDVHIGHLGVLKGVLEKFNVSEEEEVKI 180

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA----PYAATSDVH 263
              I   D    + + ++   +                  + E        P +  +  +
Sbjct: 181 RRLIDKEDYDNLEAYLTQILGEEKKELIFEILKFKGGREVLDELREILKDFPKSIEAINN 240

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E++ + +  +K     GI  G  +Y G  +                         G   
Sbjct: 241 LEEILEFVIHDKYTINLGIARGLDYYTGMVF-EIYGKKGAKQICGGGRYDNLIETFGGEP 299

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
             A       D   +   D     +  L+     D+        I  +L K G  V +  
Sbjct: 300 TPAVGFAYGFDRIMMNIDDLEIEEETILVIPVKKDKELIKKSLIIADKLRKSGKIVEF-- 357

Query: 384 MGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             E +G +   A    +  GF   +IVG K +++ KV +K  +TG +  + ++E+ N
Sbjct: 358 --EIMGRKLRKALDYANSRGFKKVIIVGEKELNEGKVTLKDMITGEQRLVKIDELAN 412


>gi|227824346|ref|ZP_03989178.1| histidyl-tRNA synthetase [Acidaminococcus sp. D21]
 gi|226904845|gb|EEH90763.1| histidyl-tRNA synthetase [Acidaminococcus sp. D21]
          Length = 420

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 63/404 (15%), Positives = 127/404 (31%), Gaps = 19/404 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V +++R+        E+  P  +  +L+        D   KEM    DR+ +++   
Sbjct: 20  WRYVESVLRDVCREFNYQEIRTPIFEHTELFQRGIGDGTDVVDKEMYTFNDRSGRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P +   +   F  +      +P   + I   FR +      + +  +F ++   S   +P
Sbjct: 80  PENTAAVVRSFVENKLYAEPMPLKVFYIGPMFRYDRPQAGRMRQFHQFGVEAMGS--PSP 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT-----GETQVF 222
                +          +  RLGLK + ++  S            +L D       E    
Sbjct: 138 VVDAETILLAI----TVLKRLGLKDLKLKINSVGCPKCRPQHRTLLQDYFRPHLKELCED 193

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR------ 276
           C   F   P+   +   D      +   + T         H E +   L E         
Sbjct: 194 CQSRFDRSPLRILDCKVDHDKPFMAGAPKITDSLCEECHDHFEMVKKLLDEAGVDYEVDS 253

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      +  +YS   + +  G  G+   +     G     V  A+        
Sbjct: 254 TLVRGLDYYTKTAYEVQYSPLGAQSAVGGGGRYDGLVEELGGPSTPGVGFAMGLERIILA 313

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                   +  +   +     D+       K    L + G     + +G  + +Q   AD
Sbjct: 314 LEKQGLLKSEKEAIDVFAVVPDEGGTADAFKAVMTLREAGYSCDMNQIGRSMKAQMKQAD 373

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             G    +I G +  S   V +++     +E++   E+++Y   
Sbjct: 374 RAGARFALIFGEEERSRGAVTVRNMADSSQEEIKRSEIVSYMKK 417


>gi|88602971|ref|YP_503149.1| glycyl-tRNA synthetase [Methanospirillum hungatei JF-1]
 gi|88188433|gb|ABD41430.1| glycyl-tRNA synthetase [Methanospirillum hungatei JF-1]
          Length = 572

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 59/408 (14%), Positives = 115/408 (28%), Gaps = 71/408 (17%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  D  R        LPF   QI   +R+E+ PR G++R REF   +A  F
Sbjct: 159 YLRPETAQGIFVDFGRLLRFYRDKLPFGTVQIGRSYRNEISPRQGMIRLREFTQAEAEIF 218

Query: 164 DLTPEGSKHSYNKMFVSYLR-----------------------------IFHRLGLKSIP 194
                    ++ +                                     +    L    
Sbjct: 219 VHPEMKDHPNFARYADYAFPLLSSEQQLGGLEAKTYTMKDAVAAGVIANEYVAYYLALTH 278

Query: 195 MRAESGPIGGDL--------SHEFIVLADTGETQVFCSKDFM-DFPIPSENTDFDDIISL 245
               +  +                    D  + ++F  +    +    ++ TD+D     
Sbjct: 279 ELLVTIGVMPSRLRFRQHLPDERAHYAEDCWDAEIFSERFGWVETVGIADRTDYDLKAHA 338

Query: 246 NSIVEQWTAPY--------------------AATSDVHNEKLFDSLPE---NKRVSARGI 282
               + +TA                              + + D+L E       +   I
Sbjct: 339 EQSGDSFTAYIQYDEPRREKRRVINANMGVLGPKYRGKAKAISDALQEVTPGPDGATVII 398

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------DG 335
           +   IF                  G D    +     G  R++ AV+E S+       + 
Sbjct: 399 DGEEIFV-PADLYEVKEEEV-DVRGVDVRPHVIEPSYGIDRMIYAVLEHSYFEEEVEGEV 456

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           + ++   S        I             ++I   L   G    +DD G  IG ++   
Sbjct: 457 RKVMRFPSRVAPVQVAIFPLMARDGLDVMAKEIARTLQMQGILAEYDDSGA-IGRRYRRQ 515

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D +G P  V V    + D  V ++ R +  +  +  +++++       
Sbjct: 516 DEIGTPFAVTVDYDSLEDQTVTLRDRDSMQQVRIPKDQLVDLIPALIR 563



 Score = 56.7 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 2/104 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G   + PLG      +  + R+      G  E+  PT+    +++ SG    +  +M +
Sbjct: 29  AGFIDYGPLGTLVKRRIEDLWRQFYVISEGYYEIECPTIGQEAMYIASGHVKGFSDKMCQ 88

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
               N+  +      E        +                   
Sbjct: 89  CPACNEY-LRADHVAEAHNIPNAATLSCEALAEKICTLPCPACN 131


>gi|169350231|ref|ZP_02867169.1| hypothetical protein CLOSPI_00975 [Clostridium spiroforme DSM 1552]
 gi|169293014|gb|EDS75147.1| hypothetical protein CLOSPI_00975 [Clostridium spiroforme DSM 1552]
          Length = 425

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 58/422 (13%), Positives = 123/422 (29%), Gaps = 11/422 (2%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M+++  +G    LP        +  +IR         E+  P  +  +L+  +     D 
Sbjct: 1   MMYKAPRGTVDILPDKTIKWQMLEQLIRTICANYNVKEIRTPIFEHTELFNRAVGDTTDV 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             KEM    D+  +++   P     +      + + S  +     Y I   FR E     
Sbjct: 61  VSKEMYTFNDKKGRSITLRPEGTAGVARAYVENKMFSNPDKITKLYYIGPMFRYERPQNG 120

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              +  +F ++         +    +     V  L +       +     +S     +  
Sbjct: 121 RQRQFHQFGVEMIGYESPYLDVECMTMAVTLVEALGLKGVKLHINTLGDEQSREAYRNAL 180

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E        E    C   F   P+   +   D          +     + T+  H  K+
Sbjct: 181 KEHFAPY-LDELCSDCKNRFETNPLRILDCKVDCDHPSMKNAPKTIDYLSETAKEHFNKV 239

Query: 268 FDSLPENKRVSA------RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            + L + +          RG++  +        S           G           +  
Sbjct: 240 CELLDDLEIEYELDTNLVRGLDY-YCHTVFEVISDDPRLGAGSTVGGGGRYNGLISELNG 298

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                       +   I   + ++  +   + +       +D   +I   L   G  V  
Sbjct: 299 PEAPGVGFAFGMERLLIAMDEELSEDEGLDVYVMPLGSKAKDLAMQITTMLRANGFSVDM 358

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D     + +QF   D +     +I+G + V D  V IK   +  ++ + +E ++ Y  + 
Sbjct: 359 DYQDRSLKAQFKTVDRMHSHFALIIGDQEVEDEVVNIKCTHSKTQDVVPIENIVAYIENH 418

Query: 442 FS 443
             
Sbjct: 419 ME 420


>gi|15639659|ref|NP_219109.1| glycyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025897|ref|YP_001933669.1| glycyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
 gi|6094401|sp|O83678|SYG_TREPA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|238689338|sp|B2S3R1|SYG_TREPS RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|3322974|gb|AAC26570.1| glycyl-tRNA synthetase (glyS) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018472|gb|ACD71090.1| glycyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
          Length = 462

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 66/473 (13%), Positives = 136/473 (28%), Gaps = 76/473 (16%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADL 79
           R G +   S       G++ + P+G    +N+     ++  R     + +    L   ++
Sbjct: 10  RRGFVFPSSEIYGGQGGVWDYGPMGIALKNNIAHAWWQDMTRLHDHIVGLDAAILMHPNV 69

Query: 80  WVESGRYDSYGKEMLRLA------------------------------------------ 97
           W  SG  D +   ++                                             
Sbjct: 70  WRTSGHVDHFSDPLVDCTVCKSRFRADQVAVPSAGGPCPQCGGALTGVRNFNLMFSTHMG 129

Query: 98  ---DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              +R     +   T + +  +       +   +PF   QI   FR+E+  +  + R+ E
Sbjct: 130 PTDERASLLYLRPETAQGIYVNYKNVLQTTRLKVPFGIAQIGKAFRNEIVTKNFIFRTCE 189

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F   P    H +          + + G++   MR  +       +HE    A
Sbjct: 190 FEQMEMQFFVR-PAEDTHWFEYWCAQRWAFYQKYGVRMNHMRWRTHA-----AHELAHYA 243

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                  +             N    D+        +    Y       +      +P  
Sbjct: 244 RAACDIEYAFPMGFRELEGVHNRGDFDLTRHAQHSGKDLC-YVDPDPNLDAAARRYVPCV 302

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
              SA       +F         + A     ++      Q G+   G MR+V        
Sbjct: 303 VETSAGLTRCVLMFLCDAYTEEYVQAPNVAFSETTQTADQEGAARTGEMRIV-------- 354

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
               +    +++P  ++ + +   D    D    +   L +      +D  G  IG ++ 
Sbjct: 355 ----LRLHPALSPTTVAFLPLVKKD-GLVDLARAVRDELRE-DFACDFDAAGA-IGKRYR 407

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             D +G P  V V  +   D  V ++ R +  +  +S   +  +      + R
Sbjct: 408 RQDEVGTPFCVTVDYQSKEDDTVTVRLRDSMAQRRVSRAFLAEFLRTEIKHYR 460


>gi|145353842|ref|XP_001421209.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581446|gb|ABO99502.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 448

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 76/182 (41%), Gaps = 11/182 (6%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G     G  ++     TF    G+  YV   S+G+ + R++  ++ + 
Sbjct: 179 EAMMGDKKALQAGTSHNLGDNFAKAFDTTFLDDKGETQYVHQSSWGV-STRLIGGILMTH 237

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWD-DMGEQI 388
            D  G+I P  +AP ++ ++ I   D+       + + I + LS  G     D D  +  
Sbjct: 238 GDDSGLILPPRLAPIQVVVVPIWKKDEEKEAVMASVDSIISSLSNAGVRTHLDADQSKSP 297

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLE--EVINYASHRF 442
           G +F   ++ G P+++ VG K V+     +  R      G    +S+E   +    +   
Sbjct: 298 GWKFNQYEMKGVPIRIEVGPKDVAKGACVVARRDVPGKEGKEFGVSIEPAALETKVNDVL 357

Query: 443 SN 444
           ++
Sbjct: 358 ND 359



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 6/143 (4%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +  +   TG      P L     +  E+   + +  E+  +     K
Sbjct: 5   PYGYAIWEGIQKYMDAKFKATGVQNAYFPQLIPYSFITKEASHVEGFAPELALVTRGGGK 64

Query: 103 AMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E ++ ++    I+SYR+LP    Q     R E+R R  + R+ EFL +
Sbjct: 65  ELEEPLVVRPTSETIVNNMLSQWIQSYRDLPMLLNQWCNVHRWEMRTRPFI-RTLEFLWQ 123

Query: 159 DAYSFDLTPEGSKHSYNKMFVSY 181
           + ++   T E ++    +M   Y
Sbjct: 124 EGHTAHATAEEAEERAMQMIRVY 146


>gi|331233138|ref|XP_003329230.1| prolyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309308220|gb|EFP84811.1| prolyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 301

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 80/255 (31%), Positives = 122/255 (47%), Gaps = 17/255 (6%)

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             R GA E+S+P LQS  LW  SGR +  G E+ RL DR   +++  PTHEE +T++ +S
Sbjct: 1   MERIGASEISMPLLQSQKLWDRSGRSNQAGPELFRLKDRKGSSLLLSPTHEEEVTNLVKS 60

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            I+S + LP   + I  KFRDE RPR G++RSREF+MKD Y+FD     +  SY ++  +
Sbjct: 61  DIQSGKQLPIKLFHIGRKFRDEARPRAGLLRSREFIMKDLYTFDADASAAMASYKEVQEA 120

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-----MDFPIPSE 235
           Y RIF  +G+      A+SG IGG  SHE+   + +GE  +           ++    + 
Sbjct: 121 YRRIFETIGIPFSVAEADSGAIGGATSHEYHYKSSSGEDSLIHCTRCPYTANLELARSTL 180

Query: 236 NTDFDDIISLNSI-------VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +   +D   L               A   AT ++H  KL  + P+      R ++  +  
Sbjct: 181 SPRVEDPSQLQVQFFSSPSSRRFLAAVLPATHELHPLKLSKACPD-----IRPVQSANED 235

Query: 289 YFGTKYSLPMSATFK 303
                 +        
Sbjct: 236 VLPAFETEWDQMEVL 250


>gi|145218843|ref|YP_001129552.1| glycyl-tRNA synthetase [Prosthecochloris vibrioformis DSM 265]
 gi|145205007|gb|ABP36050.1| glycyl-tRNA synthetase [Chlorobium phaeovibrioides DSM 265]
          Length = 489

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 62/467 (13%), Positives = 141/467 (30%), Gaps = 59/467 (12%)

Query: 18  AEIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEM 69
            ++ S  L  R G +   S         + + PLG +   N+  +      R     + +
Sbjct: 21  HKLVS--LAKRRGFVFPSSEIYGGLSACFDYGPLGSEMKKNIKDLWWRAMTRRHRNIVGL 78

Query: 70  SVPTLQSADLWVESGRYDSYGKEML----------------------RLADRNDKAMIYG 107
               + +  +W  SG   S+   M+                      R   + ++A+   
Sbjct: 79  DASIMMNPTVWEASGHVSSFNDPMIDDRTTKRRYRADHLIENHIEKLRREGKEEQALAVQ 138

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQL---KFRDELRPRFGVMRSREFLMKDAYSFD 164
             +E   T    +       +             + D  +           +   + +  
Sbjct: 139 GAYEAAGTAPDPNKALYSLIIDEGIKAPDTGSGDWTDVRQFNLMFQCDMGAVADTSGTVY 198

Query: 165 LTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           L PE ++  +            +     +   +A    I        +V  +  E Q F 
Sbjct: 199 LRPETAQGIFVNFHNVREASRMKVPFGIAQIGKAFRNEIVKGNFIFRMVEFEQMEMQYFV 258

Query: 224 SKDFMDFPIPSENTDFDDI---------ISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                     +   +  +            L+       A YA  +     +    + E 
Sbjct: 259 KPGTQVEAFEAWREERFNWYTSSLGISPEKLHWYKHDKLAHYADLAYDIKFEFPFGIEEI 318

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           + + +R            ++S            + +   +     G  R+  A++  ++ 
Sbjct: 319 EGIHSRTDFDLSQHQ---QFSGKNMEYVDQVTNERYTPYVVETSAGCDRLFLALLSDAYH 375

Query: 335 GKGII--------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
              +             VAP K +++ +    ++  +  EK+ A LS+    V +DD   
Sbjct: 376 EDVVDGEERVLLKLAPKVAPVKAAVLPLMKKGEMA-EVAEKLRAELSEQ-FLVQYDD-AA 432

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            IG ++   D +G P    V  + + D  + +++R T  +E +++ E
Sbjct: 433 SIGKRYRRQDEIGTPFCFTVDHQTIEDGTITVRYRDTAAQERINITE 479


>gi|318042801|ref|ZP_07974757.1| histidyl-tRNA synthetase [Synechococcus sp. CB0101]
          Length = 420

 Score =  104 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 58/425 (13%), Positives = 114/425 (26%), Gaps = 36/425 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP        + A  R    R    E+  P L++ +L+        D  GKEM  
Sbjct: 9   GMVDLLPQSAPLWQRIEATARSHFARAAIEEIRTPVLEATELFARGIGEATDVVGKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +++    P     +      H       P   +     FR E        R R+F
Sbjct: 69  FTDRGERSCTLRPEGTASVVRAAIQHGL-LSQGPQRLWYGGPMFRYERPQAG---RQRQF 124

Query: 156 LMKDAYSF-DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                       P     +    +     +  +     +     S             L+
Sbjct: 125 HQIGLEMLGFADPRSDVEAIAVAWDLLADLGVQGLALELNSLGSSDDRARYREQLVAWLS 184

Query: 215 DTGET-QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-- 271
           +  +             P+   ++   D  +L +         +  S     ++   L  
Sbjct: 185 ERADQLDPDSQDRLQRNPLRILDSKNPDTQALLTDAPTLAEALSPESRDRFARVTHGLTL 244

Query: 272 -----------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                             +           G + ++     + G   +       + G  
Sbjct: 245 LGIPFQLNPRLVRGLDYYSHTAFEITSTQLGAQATVCGGGRYDGLVEQLGGPPTAAIGWA 304

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                 A++ +         P+         + + +  +       ++  +L + G  V 
Sbjct: 305 LGMERLAILLAQAGAAPAAAPE---------VYVVSRGEQAEPLALQLARQLRQAGHAVD 355

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT--GI----REDMSLEEV 434
            D  G   G QF  AD  G    V++G        V +K      G      + +S EE+
Sbjct: 356 LDLTGAAFGKQFKRADRTGARWAVVIGDSEAEAGVVLLKDLRGAAGEASEPEQRLSPEEL 415

Query: 435 INYAS 439
           +   +
Sbjct: 416 LQRFA 420


>gi|294140147|ref|YP_003556125.1| histidyl-tRNA synthetase [Shewanella violacea DSS12]
 gi|293326616|dbj|BAJ01347.1| histidyl-tRNA synthetase [Shewanella violacea DSS12]
          Length = 424

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 64/418 (15%), Positives = 123/418 (29%), Gaps = 16/418 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        + A++RE  +  G  E+  P ++S DL+  S G   D   KEM  
Sbjct: 10  GMNDILPTQSPLWQKLEAVLRETVSAYGYSEIRTPIVESTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y +   FR E   +    +  +F
Sbjct: 70  FDDRNGDSLTLRPEGTASTVRAGNQHGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFNQF 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            ++         +      +                 + LG  +         I      
Sbjct: 129 GVEVYGIGTADVDAEVLMLSARLWEKLGITDHVTLELNTLGDPAERATYREALIAYLEQF 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKL 267
           +  +  ++           +D   P       D   L   + E+  A ++   ++ +   
Sbjct: 189 KEQLDEESQRRMYTNPLRVLDTKNPEVQALLVDAPELMDYLGEETRAHFSHLCELLDAVG 248

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              +   + V         +F      SL    T       D  V+            A 
Sbjct: 249 IKYVINPRLVRGLDYYNRTVFE-WVTTSLGSQGTVLAGGRYDGLVEQLGGKNTPAVGFAM 307

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMG 385
            +E        +      P  + +      D    +   KI   L     G  V     G
Sbjct: 308 GLERIVLMLETLELTDDIPATVDVYVTAMGDASKVE-AIKIAQALRTELPGLRVMSHCGG 366

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHRF 442
                Q   AD  G  + +++G   ++ ++V +K+ R    +  ++ + +  Y +   
Sbjct: 367 GNFKKQMKRADKSGALIALVIGEDELASNQVAVKYLREKKEQALVARDGLATYIAELI 424


>gi|282856964|ref|ZP_06266215.1| proline--tRNA ligase [Pyramidobacter piscolens W5455]
 gi|282585125|gb|EFB90442.1| proline--tRNA ligase [Pyramidobacter piscolens W5455]
          Length = 478

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 75/458 (16%), Positives = 148/458 (32%), Gaps = 86/458 (18%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++L I++     AE+A +   +R  M+ +         P G    +++ A   +   
Sbjct: 12  YSQWYLDIIKA----AELADYA-PVRGCMVVR---------PTGYAIWEDLQAKFDKAFK 57

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            TG +    P L  +  L  E+   + +  E   +                         
Sbjct: 58  ETGHVNAYFPLLIPSSFLRKEAEHVEGFAPECAVVT------------------------ 93

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                                           E L +       +       Y+K   S+
Sbjct: 94  ----------------------------HAGGEELEEPLVIRPTSETVIGAMYSKWVQSW 125

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +   +   +  +R E  P     + EF+     G T    + +  +  +   N     
Sbjct: 126 RDLPLLINQWANVLRWEKRPRLFLRTSEFL--WQEGHTAHATAAEAEEETVKMLNVYA-- 181

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSL----PENKRVSARGIEVGHIFYFGTKYSLP 297
                 + E    P         E+   +L     E      + ++ G   + G  ++  
Sbjct: 182 ----KIMKEDMALPVVEGVKSEGERFPGALDTYTCETMVSDTKALQAGTSHFLGQNFAKA 237

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
            +  F+  +G   Y    S+G+ + R++ A+I +  D  G+I P  VAP K  ++ I   
Sbjct: 238 FNIQFQDQNGAMQYAWTTSWGV-STRMIGAIIMTHSDNDGLILPPRVAPVKAVILPISKD 296

Query: 358 DQ---VCRDACEKIYARLSKV--GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFV 411
           D           ++  RL+ V     V  D+    +   +F      G PL++ +G K  
Sbjct: 297 DATFAELDAKAHELANRLNSVLGPLTVRVDEQNHMRPADRFFYHLQKGVPLRLELGEKDA 356

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +   V    R TG++ED+  E +    +    + +  L
Sbjct: 357 AAGTVRAVRRDTGVKEDLKWETLAERVAAILEDIQKSL 394


>gi|268593183|ref|ZP_06127404.1| histidine--tRNA ligase [Providencia rettgeri DSM 1131]
 gi|291311229|gb|EFE51682.1| histidine--tRNA ligase [Providencia rettgeri DSM 1131]
          Length = 425

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 137/429 (31%), Gaps = 38/429 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP   +    + A ++      G  E+  P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTRVWQKIEATLKNILQGYGFSEIRTPIVEQTPLFRRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRND+++   P +          H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FNDRNDESLTLRPENTAGCVRAGIEHGLLYNQEQRLWYL-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
               A  F    P+            +  +     +        S     +     +   
Sbjct: 126 HQLGAEVFGLAGPDIDAEVILMTARWWKALGISEHVTLELNSIGSLEARANYREALVAFL 185

Query: 215 DTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +  + ++   C +     P+   ++   +I +L +   +        S  H + L   L 
Sbjct: 186 EQHKDKLDEDCKRRMYTNPLRVLDSKNQEIQALLNDAPELFDYLDVESREHFDGLCKLLE 245

Query: 273 ------ENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                    +   RG++     +F       G++ ++     + G    +      +  +
Sbjct: 246 AAGVQYRVNQRLVRGLDYYNRTVFEWVTTALGSQGTVCAGGRYDGLV--EQLGGRATPAV 303

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL------S 373
           G    +  ++    +       D+           +   Q      EK+   L      +
Sbjct: 304 GFAMGMERMVLLVQEVNPEFTADASVADVYLASFGENSQQAAILVAEKVRDALPTLRLMT 363

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G        G     Q A AD  G  + +I+G   + +++V +K   TG++E +S + 
Sbjct: 364 NHG--------GGNFKKQLARADKQGAKIALILGEDEIKNNQVTVKDLRTGVQETISQQL 415

Query: 434 VINYASHRF 442
           + +  +   
Sbjct: 416 MASRIAELL 424


>gi|322370889|ref|ZP_08045444.1| histidyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320549566|gb|EFW91225.1| histidyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 432

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 68/431 (15%), Positives = 137/431 (31%), Gaps = 33/431 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G Y   P    A   +   + E     G  E+  P+++  DL+  +SG  D   ++    
Sbjct: 9   GFYDRYPEEWAAWREIVDTVEETAREFGFREIDAPSVEPTDLFRVKSG--DEIVEQTYSF 66

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  +        E+  T       +     P  ++    ++R E   +    R REF 
Sbjct: 67  EDKGGRE--VTLIPEQTPTRSRLVQQRKDLGTPIKWFDTSKRWRYEAVQKG---RDREFF 121

Query: 157 MKDAYSF-DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-----AESGPIGGDLSHEF 210
             D   F   + E            Y ++     ++          A    +  + S + 
Sbjct: 122 QTDIDIFGVESVEADAEIIACAATIYEKLGVADAVEFRLNDRQLLDALLKAMDVEGSKDV 181

Query: 211 IVLADTGE---TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ------WTAPYAATSD 261
           + + D  E    + F     ++    +   + D++ +++  +E         AP    +D
Sbjct: 182 MRVIDKKEKLSREEFLDNLELEGVDRATAEEIDELTAISGEMESALVELSDKAPEGDAAD 241

Query: 262 VHNEKLFDSL-------PENKRVSARGIEVGHIFYFG---TKYSLPMSATFKGADGKDHY 311
              E++ D          E+       I  G  +Y G     +S           G+  +
Sbjct: 242 DAIERMHDLYDVLSAYDVEDMCTFDLSIVRGMDYYTGLVFEAFSTEGDLRALFGGGRYDH 301

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           +           +  A   S+         +       +   +       R+   +    
Sbjct: 302 LIEQFGSREVPAIGFAFGYSTTMHLLKKLGEWPDEALSTDAYVLTISDSVREIGLEYAKG 361

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G  V  D  G  +G QF  AD +     V+VG + +++  V +++  +G  E +  
Sbjct: 362 LRSAGLTVETDLTGRSVGEQFGYADRINAEYTVVVGERDLNEGVVTVQNMDSGEEEQVPK 421

Query: 432 EEVINYASHRF 442
            EV+     R 
Sbjct: 422 NEVVENVLDRL 432


>gi|224542127|ref|ZP_03682666.1| hypothetical protein CATMIT_01302 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524964|gb|EEF94069.1| hypothetical protein CATMIT_01302 [Catenibacterium mitsuokai DSM
           15897]
          Length = 458

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 56/440 (12%), Positives = 135/440 (30%), Gaps = 56/440 (12%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE------MSVPTLQSADLWVESGRYDSYGKEM 93
           + + P+G +  +N+  +  +        E      +      +  +W  SG   ++   +
Sbjct: 33  WDYGPMGVQLKNNIKNLWWKRF----VQECPYNVGIDSAIFMNPRVWQASGHVGNFNDPL 88

Query: 94  LRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-ELRPRFG 148
           +       +     +I     E          + ++                 ++R    
Sbjct: 89  IDCKQCKSRHRADKLIEAYDPELHPDGWTPEEMMTFIREHNIACPECGGHDFTDIRQFEL 148

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIP 194
           +  +   ++KDA S       +       F +  R                 R  +    
Sbjct: 149 MFETSMGVVKDAKSKIYLRPETAQGIFVNFKNVQRTSRKKLPFGIGQIGKSFRNEITPGN 208

Query: 195 MRAESGPIGGDLSHEFIVLADTGE----TQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
               +          F    +  E     +  C +   D  I  EN  + D        +
Sbjct: 209 FIFRTREFEQMELEFFTKPNEDLEWFEKWRHDCMQFLYDLGINKENLRYRD------HDQ 262

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           +  + Y+  +            E   ++ R            +YS            + +
Sbjct: 263 KELSFYSKATTDIEYLYPFGWGELWGIADRTDYDLGRHQ---EYSKKNLEYLDPDTHEKY 319

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKG---------IIWPDSVAPFKISLINIKAHDQVC 361
              +    +GA R+  +V+  + + +          + +  ++AP K++++ +       
Sbjct: 320 LPYVIEPSVGADRLFLSVLADAFEEQKLENGDVRKVMHFHPALAPVKVAVLPLTKK---Q 376

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   ++Y  L K      +D  G+ IG ++   D +G PL V V      D  V +++R
Sbjct: 377 SDEAMELYNDLVK-DFYCEYDQAGQ-IGKRYRRQDAIGTPLCVTVDFDTAEDHSVTVRNR 434

Query: 422 LTGIREDMSLEEVINYASHR 441
            T  +  + ++++  Y + +
Sbjct: 435 DTMEQIRLPIDQLKAYIADK 454


>gi|304314183|ref|YP_003849330.1| glycyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587642|gb|ADL58017.1| glycyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 564

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 89/278 (32%), Gaps = 17/278 (6%)

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
              Y              G   I   A+          ++     +GE         +++
Sbjct: 300 MAHYAIDCWDVEAFTDSYGWIEIIGIADRTDYDLKSHSQY-----SGEDLRVF----IEY 350

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
             P +         +  +  ++    A  +   +E   D + +  R   + I  G     
Sbjct: 351 EKPKKIKRRAVKPDMGRLGPRFRKDAARIAQALSEIEADEVEKALRNEGKFILDGEFEIL 410

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA----AVIESSHDGKGIIWPDSVAP 346
               +           G+  Y  +     G  R++       +    D      P  VAP
Sbjct: 411 PDDVTFEDVEEVV--TGEKVYPHVIEPSFGIDRIIYTLLLHSLVDEDDRTYFRLPPHVAP 468

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            ++S+  +    ++  +   +I  +L K G    +D  G  IG ++A +D +G P  V V
Sbjct: 469 VEVSVFPLVNKKEMV-EVALEIKRKLRKSGFIAEFDSSG-TIGRRYARSDEIGVPFAVTV 526

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + + D  V ++ R    +  + +EE+ +       +
Sbjct: 527 DHETLEDGTVTLRSRDDCSQIRLKIEELDSKLEEFIKS 564



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQS 76
           A       +  +  I+    G   + PLG    + +    RE    R G  E+  PT+  
Sbjct: 11  ARKRG--FLWSSFEIYSGVAGFVDYGPLGATLKNKIMNRWREFYVVREGFYEIESPTIMP 68

Query: 77  ADLWVESGRYDSYGKEMLRLADRND 101
            +    SG  D +   M +  +  D
Sbjct: 69  EEALKASGHVDHFNDPMTQCKECMD 93


>gi|307265229|ref|ZP_07546788.1| histidyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919851|gb|EFN50066.1| histidyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 418

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/404 (12%), Positives = 123/404 (30%), Gaps = 19/404 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  +IRE  +  G  E+  P  +  +L++       D   KEM    D+  +++   
Sbjct: 20  WQYIEGLIREICDVYGFKEIRTPGFEHTELFLRGVGESTDIVRKEMYTFTDKGGRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
                     F  H       P   Y I   +R E      +    +F ++   +   + 
Sbjct: 80  AEGTSPAVRAFIEHNLYAETQPTKLYYITPVYRYERPQSGRLREHHQFGVEIFGAKSASA 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +    S     +  L + +     +             +  +F+        +  C    
Sbjct: 140 DAEVISVAMTLLKKLGLNNLELRINSIGCPACRKNYNKVLKDFL----KDNLEYLCDDCK 195

Query: 228 MDFPIPSENTDFDDIISL-----------NSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           + + I         + S            + + +   + +       +   +D + + + 
Sbjct: 196 VRYEINPLRVLDCKVESCQRITKDAPLITDYLCDDCKSHFEELQKYLDIMGYDYIIDPRI 255

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V  RG++      F        +       G+   +     G     V   +        
Sbjct: 256 V--RGLDYYTKTAFEIISKDIGAQGTVCGGGRYDGLIEECGGPSMPGVGFGMGLERLLIT 313

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                  +   +   + I    +  +     +  +L   G  V  D+M   + +Q   A+
Sbjct: 314 LEQNGIEIPKPEGVDLFIAYVGEEAKLFTFALANKLRFNGLKVERDNMDRSLKAQMKYAN 373

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            L     +++G + + ++KV++K    G   ++S++E+     +
Sbjct: 374 KLNAKFAIVIGEEEMKENKVKLKDMRVGSEVEISIDEIEQRIKN 417


>gi|310658605|ref|YP_003936326.1| histidyl tRNA synthetase [Clostridium sticklandii DSM 519]
 gi|308825383|emb|CBH21421.1| histidyl tRNA synthetase [Clostridium sticklandii]
          Length = 420

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 63/411 (15%), Positives = 122/411 (29%), Gaps = 16/411 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP      + V  + ++  +  G  E+  P  +  +L+        D   KEM     ++
Sbjct: 13  LPKDINKWNYVETLFKKVCSDFGYGEIRTPDFEYTELFKRGVGDTTDIVQKEMFTFEAKS 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            +++   P     +   +  +       P  F+ I   FR E        R R F     
Sbjct: 73  KESITLKPEGTAPVVRAYIENKLYADPQPSKFFYITPCFRYEKPQAG---RLRAFHQFGI 129

Query: 161 YSFDLTPEGSKHSYN----KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             F      +         + F             +     ES      +  +++     
Sbjct: 130 EIFGTDSSSADAEVISLAVEFFRRLEIDDKIELRINSVGTLESRKEYNKILRDYLKPN-Y 188

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                 C   F   P+   +   +    ++             S +H EKL   L   K 
Sbjct: 189 DNLCQTCKDRFEKNPMRIIDCKNETCKEISHDAPLMINHLDEESKLHFEKLKKYLTAMKI 248

Query: 277 ------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                    RG++      F    +   S +     G+   +     G     V   +  
Sbjct: 249 DYTIDPHIVRGLDYYTKSAFEFVSNDIGSQSTVCGGGRYDGLIEELGGPKIPGVGFGLGI 308

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                        +       + I +  +       KI   L KVG     D +G+ I +
Sbjct: 309 ERLILLLDNLEKDINQQPSLDVFIASMGEAAEIEAFKILYDLRKVGISCEKDHVGKSIKA 368

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           QF  AD L     +++G   +++  V +K      +  + L++++NY  + 
Sbjct: 369 QFKYADKLNSRFTIVLGDDEINNQIVTVKDMSNSTQTQIKLDDIVNYFKNL 419


>gi|251788749|ref|YP_003003470.1| histidyl-tRNA synthetase [Dickeya zeae Ech1591]
 gi|247537370|gb|ACT05991.1| histidyl-tRNA synthetase [Dickeya zeae Ech1591]
          Length = 424

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 58/420 (13%), Positives = 124/420 (29%), Gaps = 19/420 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++     G  E+  P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPAETALWQRIEDSLKQVLRGYGYSEIRTPIVEQTSLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGILYNQEQRLWYTGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + ++           + +G      R     I     H+
Sbjct: 130 CEVFGLKGPDIDAEMILMTARWWRVLGIDQHVSLELNSIGSLDARARYREALIAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNE--- 265
             +  D            +D          D+   L   ++  + A +    ++  E   
Sbjct: 190 DQLDEDCLRRMYTNPLRVLDSKNAQVQALLDNAPVLTDYLDDDSRAHFDELCELLTESGI 249

Query: 266 --KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             K+   L        R +        G++ ++     + G    +      +  +G   
Sbjct: 250 PYKVNSRLVRGLDYYNRTVFEWVTSSLGSQGTVCGGGRYDG--MVEQLGGSSTPAVGFAM 307

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  ++             S     +    +       +   EK+   L ++     +  
Sbjct: 308 GLERLVLLVQTVNPAFAAQSGVDAYLISSGVGTQHAAIK-LAEKVRDALPQLTLMTNY-- 364

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G     QFA AD  G  + +++G   V+  +V +K+  +G +E +S  +V    +   +
Sbjct: 365 GGGNFKKQFARADKSGARVALVLGETEVATGQVVLKNLTSGEQETLSQADVAARLAALLN 424


>gi|312143969|ref|YP_003995415.1| histidyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
 gi|311904620|gb|ADQ15061.1| histidyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
          Length = 424

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 55/413 (13%), Positives = 115/413 (27%), Gaps = 15/413 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP   K    +  +  +        E+  P  +  +L+    G   D   KEM    D++
Sbjct: 13  LPPEIKKWQYIEDLTHKLFTNYNYQEIRTPIFEYTELFQRGIGEVTDIVEKEMYTFEDKS 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            +++   P     +   F  +    +  P  +Y I   FR E        R R+F     
Sbjct: 73  GRSITLRPEGTASVIRSFLENKIYGQAQPTKYYYIGPMFRYERPQSG---RFRQFHQLGV 129

Query: 161 Y-SFDLTPEGSKHSYNKMFVSYLRIFHRLG--LKSIPMRAESGPIGGDLSHEFIVLADTG 217
                  P       +        +         +        P        F++     
Sbjct: 130 EAIASDDPALDAEIISLGIRLMEELGLEDFELHLNSVGCKSCRPKYVKKLKSFLIEN-KE 188

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP----- 272
           +    C +     P+   +       S+     + T       D H  ++   L      
Sbjct: 189 DLCDKCRERIERNPLRVLDCKNQSCQSVIKGAPKITEHLCPECDEHFSEVQSFLDILNIE 248

Query: 273 -ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                +  RG++      F  K +   +       G+ + +           +  A+   
Sbjct: 249 YNINPLLVRGLDYYTNTAFEIKDNALGAQNTVFGGGRYNGLAEEIGNRDIPGIGFALGIE 308

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                       VA      + I    +  +    ++   L         D +   +GSQ
Sbjct: 309 RLLLSLDAKGIEVAEEAGIDLYITVIGKKAKREAFRLLDILRNEDFKTEIDYLDRSVGSQ 368

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              AD +     +I+G   + ++   I++  +G  E++ L  ++         
Sbjct: 369 MKSADRMNAEYTIIIGEDELENNSATIRNMKSGNEEEIKLSNLLEVMKQLVDK 421


>gi|297538111|ref|YP_003673880.1| histidyl-tRNA synthetase [Methylotenera sp. 301]
 gi|297257458|gb|ADI29303.1| histidyl-tRNA synthetase [Methylotenera sp. 301]
          Length = 436

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 58/426 (13%), Positives = 114/426 (26%), Gaps = 32/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y  LP        +    R    + G   + +P ++S DL+V S     D   KEM  
Sbjct: 23  GFYDILPEATPLWFKLEDTARRVLGQYGYKNIRMPLVESTDLFVRSVGEHTDIVEKEMYA 82

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     N P   +     FR E   +    R R+F
Sbjct: 83  WEDALNGDKLTLRPEGTAGCVRAVVESNLTYNGPVRLWYSGAMFRHENVQKG---RQRQF 139

Query: 156 LMKDAYSFDLTPEGSKH---------SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
                 +F                               + +G     +      I    
Sbjct: 140 HQIGVEAFGFDSPQVDAEQIVLLARLWRELGIADVELQINSIGDAHERLEYRKVLIAYFE 199

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI-ISLNSIVEQWTAPYAATSDVHNE 265
            H  ++  D            +D   P      +     ++S+ ++  A +     + + 
Sbjct: 200 QHADLLDEDAKRRLHTNPLRILDTKNPRMQAMCEAAPKLIDSLGDETRAHFDGLCKLLDA 259

Query: 266 KLFDSLPENKRVSARGIEVGHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                +   + V         +F       G + ++     +     +       + G G
Sbjct: 260 AGVAYIVNARLVRGLDYYNRTVFEWVTTKLGAQGTIAGGGRYDALVERLGGDATPACGFG 319

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                  ++   +       P          + +    +        I  +L      V 
Sbjct: 320 IGLERVFLLMQEYGVTADDAP---------DVYLVNVGEQAEQVAFSIAEQLRNADIQVI 370

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---TGIREDMSLEEVINY 437
               G    SQ   AD       +I+G   V++ +V +K  L    G ++  S+E+ I  
Sbjct: 371 LHAGGGSFKSQMKKADRSQAKFALIIGDDEVANKQVTLKPMLATVKGEQQQCSIEQAIEN 430

Query: 438 ASHRFS 443
            +   +
Sbjct: 431 LTAALA 436


>gi|284046709|ref|YP_003397049.1| glycyl-tRNA synthetase [Conexibacter woesei DSM 14684]
 gi|283950930|gb|ADB53674.1| glycyl-tRNA synthetase [Conexibacter woesei DSM 14684]
          Length = 456

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 57/441 (12%), Positives = 131/441 (29%), Gaps = 36/441 (8%)

Query: 28  RTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G I   S    G+   Y +   G     NV +         R   + +    +QS  +
Sbjct: 17  RRGFIFPSSEIYGGVGSTYDYGHYGVLLKTNVKSEWWRAMLQQRDDVVAIDSAIIQSPRV 76

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM------TDIFRSHIKSYRNLPFTFY 133
           W  SG    +   +++      +        E  +        +         + P  F 
Sbjct: 77  WEASGHLAGFSDPLVQCLGECKRRWRLDHLQEAAVENGEDPALVRCPTCGGELSEPRAFN 136

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
            +       +R     +  R    +  +                 ++ +    R  +   
Sbjct: 137 LMFETTVGPVRDAGATVYLRPETAQGIFINFKNVLQFARRKPPFGIAQVGKSFRNEITPG 196

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                +         EF V  D             +          D +       ++ +
Sbjct: 197 NFIFRTREFEQMEM-EFFVPPDDAPRWFAHWLSERERWYHELGIRPDHLRLRAHDQDELS 255

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYV 312
              + TSDV          E + ++ RG    +      + +      +     G+ +  
Sbjct: 256 HYSSGTSDV-EYLFPIGWSELEGIANRGEFDLNAH----RTASGEKLEYMDPGTGERYTP 310

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDA 364
            +     GA R   A +  ++D + +             +AP K++++ +        + 
Sbjct: 311 HVIEPAAGADRATLAFLVDAYDEEEVEGDTRTVLRLHPRLAPVKVAVMPLLKKG-GHPEL 369

Query: 365 CEKIYARLSKVGCDV--FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             +I+A L      +   +D+ G  IG ++   D +G P  V +  + + D  V ++ R 
Sbjct: 370 AREIFADLR---VRMQGEYDE-GGSIGKRYRRQDEIGTPWGVTIDHQSIEDQTVTLRDRD 425

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +  +  ++++++      R  
Sbjct: 426 SLEQVRIAIDDLAPELERRLK 446


>gi|299143683|ref|ZP_07036763.1| histidine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518168|gb|EFI41907.1| histidine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 437

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 69/436 (15%), Positives = 134/436 (30%), Gaps = 42/436 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP  Q   + +   IR+   + G + +  P ++ +++ +  G  ++  +     
Sbjct: 11  PGFMELLPKEQILFNEMMDTIRKNFEKHGFLPIDTPAIEKSEVLLAKGGGETEKQIYRFT 70

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               D ++ +  T       +   +  S    PF  Y I   +R E   +    R REF 
Sbjct: 71  KGDTDMSLRFDLTVPLARYTVEHFNDLS---FPFRRYHIGKVYRGEKAQKG---RFREFY 124

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR---------------LGLKSIPMRAESGP 201
             D  +         +      V Y                      G        +S  
Sbjct: 125 QCDIDTIGNEKLDILNDAEFPVVIYHTFKDLGFDDFTIRINNRKILKGFFESLNILDSVD 184

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN---------TDFDDIISLNSIVEQW 252
           +   +     +  +  + ++  +    D  +   +           FD +  L    E +
Sbjct: 185 VLRAVDKIDKIGREKVKEELCDNGIEEDIAVKIIDFILISGTNSEIFDALDRLEIDNEIF 244

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT-------KYSLPMSATFKGA 305
               +    V       ++PE        I  G  +Y GT        YS   S    G 
Sbjct: 245 NEGLSELKQVVKYITEFAVPEKNFTVDLKIARGLDYYTGTVYETTLDNYSNVGSVCSGGR 304

Query: 306 DGKDHYVQMGSYGIGAMRVVA-AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                         G    +  + +    +   II     +   + +I +        D 
Sbjct: 305 FDNLASYYTDKKLPGVGLSIGLSRLFYQLNEAKIIEAKKKSLIDLIVIPMTG----FVDE 360

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             K+ ++L   G +        +I  +F  A+ L  P  ++VG   V   K  +K  +TG
Sbjct: 361 AIKLVSKLRDGGINTIIYTEDAKIAKKFKYANALEVPYTLVVGENEVKTEKYALKDMVTG 420

Query: 425 IREDMSLEEVINYASH 440
            +E++SL E+I+    
Sbjct: 421 NQEELSLSEIISRIKE 436


>gi|307152174|ref|YP_003887558.1| histidyl-tRNA synthetase [Cyanothece sp. PCC 7822]
 gi|306982402|gb|ADN14283.1| histidyl-tRNA synthetase [Cyanothece sp. PCC 7822]
          Length = 430

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 56/410 (13%), Positives = 117/410 (28%), Gaps = 11/410 (2%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++  +  +R    E+  P  +   L+        D  GKEM    DR 
Sbjct: 14  LPQEVSYWQQVESVAAQILSRALYQEIRTPIFEQTSLFERGIGEATDVVGKEMYTFKDRG 73

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+++   P     +      H           +     FR E        +  +  ++  
Sbjct: 74  DRSITLRPEGTAGVVRCLIEHNLYASGGVQRLWYKGPMFRYERPQAGRQRQFHQIGVELL 133

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
            S D   +    +     +  L + +     +     E           ++         
Sbjct: 134 GSADYRADVEVIALATDILQALGLKNLKLDLNSVGNREDRQNYRQALVNYLTPYKPQL-D 192

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE------N 274
               +     P+   ++  +   ++ S            S  H E++   L +       
Sbjct: 193 PDSQERLERNPLRILDSKDEQTRAICSGAPSIIDYLGTESKRHFEQVQQLLTDLAIPYQI 252

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                RG++      F  +     +       G+   +     G                
Sbjct: 253 NPCLVRGLDYYTHTAFEIQSDELGAQATVCGGGRYDGLVAELGGPETP--AVGWAIGMER 310

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
              ++     AP       I +  +        +  +L   G  V  D  G   G QF  
Sbjct: 311 LILLLQQLQQAPNFNLDFYIVSRGETAESQGLILAQKLRHAGLTVELDLSGSAFGKQFKR 370

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           AD  G    +I+G +  ++  V++K  +T  ++ ++ EE++        +
Sbjct: 371 ADRSGAAATLILGDEEAANQTVQLKWMMTKEQQTLTQEELLTQLPELKQS 420


>gi|255071855|ref|XP_002499602.1| predicted protein [Micromonas sp. RCC299]
 gi|226514864|gb|ACO60860.1| predicted protein [Micromonas sp. RCC299]
          Length = 670

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 51/383 (13%), Positives = 106/383 (27%), Gaps = 30/383 (7%)

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            S+  E+   A             E  +    + H +                +     +
Sbjct: 268 QSFRNEIAPRAGLLRVREFTQAEIEHFVHPEQKDHSRFAEVADVMLSLFSRDAQLGAVKK 327

Query: 147 FGVMRSREFLMKD--------AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
              M   E + K          +         K   N   + + +              +
Sbjct: 328 PFPMTIGEAVEKGIVANQTLGYFIARTQTFLEKIGVNPERLRFRQHLQHEMAHYAEDCWD 387

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
           +         E + LAD     +    D     + +     +  +    +VE        
Sbjct: 388 AEIECSYGWIECVGLADRSAFDLKAHSDKSKVELTAYERFAEPKMVETLVVEPNKKDMGK 447

Query: 259 TSDVHNEKLFDSL--------------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                 + + D+L               E    +   IE G +          ++   + 
Sbjct: 448 AFKKDAKAVTDALMALCQEDALALAAKVEADGKAELKIEGGSVEILPGMV--KIAMETQK 505

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
             G++    +     G  R++  + E S   +      +V  F   +  IK       +D
Sbjct: 506 VSGRNFTPSVIEPSFGIGRIMYCMFEHSFYIRPEDEQKTVFRFSPIIAPIKCTIFPLVND 565

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               D    I   L+  G     D     +G ++A  D LG P  V V  + + D+ V I
Sbjct: 566 AGMNDLAGTISRVLATEGISSKLDTTAVSVGKRYARTDELGVPFAVTVDHRSLQDNTVTI 625

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R +  +  +++++V+      
Sbjct: 626 RERDSCDQVRVAVDDVLPLIKKL 648



 Score = 51.7 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAI-EMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     N+ A  R+      A+ E+  P++    +   SG  + +   M+ 
Sbjct: 85  AGLYDYGPPGCAVKSNLQAFWRQHFVLNEAMLEVECPSVTPEVVLKASGHVEKFTDLMVN 144

Query: 96  LADRNDK 102
                D 
Sbjct: 145 DVVTKDC 151


>gi|253996240|ref|YP_003048304.1| histidyl-tRNA synthetase [Methylotenera mobilis JLW8]
 gi|253982919|gb|ACT47777.1| histidyl-tRNA synthetase [Methylotenera mobilis JLW8]
          Length = 422

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 62/419 (14%), Positives = 115/419 (27%), Gaps = 26/419 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y  LP        +    R   ++ G   + +P ++S DL+V S     D   KEM  
Sbjct: 10  GFYDILPEATPLWFKLEDTARRVLSQYGYKNIRMPLVESTDLFVRSVGEHTDIVEKEMYA 69

Query: 96  LADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMR 151
             D  +   +   P            +  +Y      +Y     + +   + R R     
Sbjct: 70  WEDALNGDKLTLRPEGTAGCVRAVVENNLTYNGPVRLWYSGAMFRHENVQKGRQRQFHQI 129

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSHE 209
             E    +    D           +             +     RAE     I     H 
Sbjct: 130 GVEAFGFNTPEVDAEQIVLLARLWRELGIADVELQINSIGDAHERAEYRNVLIAYFEQHA 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI--VEQWTAPYAATSDVHNE-- 265
            ++  D            +D   P      +    L      E           +++   
Sbjct: 190 DLLDEDAKRRLHTNPLRILDTKNPRMQAMCEAAPKLLDCLGAETRAHFEGLCKRLNDAGV 249

Query: 266 --KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L        R +        G + ++     +     +       + G G   
Sbjct: 250 AYTINPRLVRGLDYYNRTVFEWVTTKLGAQGTIAGGGRYDSLVERLGGDATPACGFGIGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++             +     + L+N+    +    A   I  RL      V    
Sbjct: 310 ERVFLL------MQEYQVVADDAPDVYLVNVG---EQAEAAAFGIAERLRNANIQVILHA 360

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---TGIREDMSLEEVINYAS 439
            G    SQ   AD       VI+G   V++++V +K  L    G ++ +S+E  + Y +
Sbjct: 361 GGGSFKSQMKKADRSRAKYAVILGDDEVANNEVALKPLLATVKGEQQKLSVEAAVTYLT 419


>gi|312129532|ref|YP_003996872.1| glycyl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
 gi|311906078|gb|ADQ16519.1| glycyl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
          Length = 485

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 60/444 (13%), Positives = 130/444 (29%), Gaps = 46/444 (10%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +Y +   G +  +N+  +  +   +     + +          W  SG  D +   M+  
Sbjct: 31  VYDYGQNGVELKNNLKQVWWKAMTQLHDNIVGVDAAIFMHPLTWKASGHVDGFNDPMIDN 90

Query: 97  ADRNDKAMIYGPT----------------------HEEVMTDIFRSHIKSYRNLPFTFYQ 134
            D   +                               E+++      ++           
Sbjct: 91  KDSKKRYRADQLLEGKAEEYAAAGQQDKADALLQKMGELLSAEKLDEVRDLIIAEGITCP 150

Query: 135 IQLKFRD-ELRPRFGVMRSR--EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
           I       E+R    +  ++        +  +           N + V            
Sbjct: 151 ISKTSNWTEVRQFNLMFSTQVGSVAEDSSLIYLRPETAQGIFVNFLNVQKSGRMKVPFGI 210

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVF---CSKDFMDFPIPSENTDFDDIISL--- 245
           +   +A    I        +   +  E Q F    S+             F   I L   
Sbjct: 211 AQIGKAFRNEIVARQFTFRMREFEQMEMQFFVRPGSEMEWYEKWKETRMRFHKAIGLPAE 270

Query: 246 --NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                  +  A YA  +     +      E + + +R           +K  L       
Sbjct: 271 KLKYHDHEKLAHYANAAVDIEFEFPFGFREIEGIHSRTDFDLRNHQELSKKKLQYFDPDL 330

Query: 304 GADGK---DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---- 356
           G DGK   ++   +    +GA R+  A   +++  +      +      +L  IKA    
Sbjct: 331 GEDGKAIGNYIPYVIETSVGADRMFLAAFCNAYTVETGEKERTYLKLHPALSPIKAAVLP 390

Query: 357 --HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +  ++I A L  +     +D+ G  IG ++   DL+G P  + V  + + ++
Sbjct: 391 LVKKDGLAEKAQEIAASLR-LHFRTVYDEGGA-IGKRYTRQDLIGTPFCIAVDYETMENN 448

Query: 415 KVEIKHRLTGIREDMSLEEVINYA 438
            V I+HR +  +E + ++++    
Sbjct: 449 TVTIRHRDSMEQERVPIDQLKEKI 472


>gi|258511548|ref|YP_003184982.1| glycyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478274|gb|ACV58593.1| glycyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 464

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 66/458 (14%), Positives = 137/458 (29%), Gaps = 51/458 (11%)

Query: 28  RTGMI---HQHSKGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEM--SVPTLQSADL 79
           R G I    +   G+   + + PLG +   N+             + +      L +  +
Sbjct: 14  RRGFIFPGSEIYGGLANTWDYGPLGAQVKHNLKRAWWRFFIEQNPLNVGLDSAILMNKQV 73

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           WV SG   ++   M+       +        E          +             +L+ 
Sbjct: 74  WVASGHVANFHDPMVDCRQCKARFRADKLIEEAAEAKGKSLVVDGLPFAEMERLMEELQI 133

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYL 182
                        R+F M       +T + +   Y                   M     
Sbjct: 134 ACPNCGARDFTNVRQFNMMFRTFQGVTEDAANEVYLRPETAQGIFVNFKNVQRTMRKKLP 193

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHE------FIVLADTGETQVFCSKDFMDFPIPSEN 236
               + G            I      E      F    +  +   +  +  MD+ + S  
Sbjct: 194 FGIGQFGKSFRNEITPGNFIFRTREFEQMELEFFCAPGEDEKWFAYWRQTCMDWLL-SLG 252

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              D +   +   EQ +    AT+D+   +      E   V+ R            ++S 
Sbjct: 253 IKPDHLRFRDHAKEQLSHYSKATTDI-EYRFPFGWGELLGVANRTDYDLKAHQ---EHSG 308

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPF 347
                 +    +          IGA R+  AV   ++D + +              +AP+
Sbjct: 309 ENMM-VQEEGQEPFIPYCIEPSIGADRLFLAVFADAYDEEEVAEGDTRVVLRLHPKLAPY 367

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +++++ +        +   ++Y  L K      +D+ G  IG ++   D +G P  V   
Sbjct: 368 QVAVLPLSKK---LNEPAHRLYLDLIKT-YSADYDETG-SIGKRYRRQDEIGTPFCVTYD 422

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +  SD +V I+ R +  +  + +E V  +   +  ++
Sbjct: 423 FESESDGQVTIRMRDSMEQVRIPIEGVRTWLDEQLQSS 460


>gi|303326110|ref|ZP_07356553.1| histidine--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
 gi|302864026|gb|EFL86957.1| histidine--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
          Length = 418

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 60/400 (15%), Positives = 116/400 (29%), Gaps = 21/400 (5%)

Query: 52  NVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPT 109
            +    R+   R G +E+  P ++  +L+  S     D   KEM    DR  +++   P 
Sbjct: 22  RMENCARDIFGRYGFVELRTPLVEFTELFQRSIGEETDVVQKEMYTFPDRKGRSLTLRPE 81

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
               +   +     + R      +     FR E   +    R R+F   +          
Sbjct: 82  ATAGVMRAYIESGLNSREAVSRLFTTGPMFRYERPQKG---RMRQFHQINCECLGTQSPL 138

Query: 170 SKH---SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           +          F+  L +       +    AE  P   +   E++   D       C++ 
Sbjct: 139 ADAELIIMLMRFLRALGLKDLGLKLNSLGCAECRPRFKEALLEYLRGVDRNALCPDCARR 198

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
               P+   +       +L     +           H E + + L    R     +E+ H
Sbjct: 199 VDSNPLRVLDCKQPGCRALTDNAPKLLDYNCPECRAHFETVLEML----RAEDLPLELDH 254

Query: 287 IFYFGTKYSLPMSATFK-GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS-- 343
               G  Y    +     G+ G    V  G    G ++ +             +   +  
Sbjct: 255 RLVRGLDYYCRTTFEVVSGSIGAQSAVAGGGRYDGLIKSLGGPDVPGVGFACGMERLALL 314

Query: 344 --VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ--FAVADLLG 399
                       +   ++  R     +  +L   G     +      G +     A   G
Sbjct: 315 LGDDAETRPDFYLLGIEEAGRAQAFALAQKLRAAGLRGEMNFS--TGGFKSLMRQAGKSG 372

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
               +I+G    + + V IKH  +G +  M   + I Y  
Sbjct: 373 ARFCLIIGPDEAAQNNVTIKHLDSGEQRSMPQADAILYLQ 412


>gi|225550693|ref|ZP_03771642.1| glycine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225379847|gb|EEH02209.1| glycine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 473

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/433 (11%), Positives = 132/433 (30%), Gaps = 36/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    +N+  +  +E    +   + +    + +  +W  SG  D++     +  
Sbjct: 35  WDYGPLGVLLKNNLKNLWWKEFVTKQKDVVGLDSAIILNPLVWKASGHLDNFSDPLIDCK 94

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD---ELRPRFGVMR 151
               R     +     E +      S+ +  + L           +    E+R    + +
Sbjct: 95  NCKARYRADKLIESFDENIHIAENSSNEEFAKVLNDYEISCPTCKQFNWTEIRHFNLMFK 154

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRA 197
           + + +++DA +       +       F +  R                 R  +       
Sbjct: 155 TYQGVIEDAKNVVYLRPETAQGIFVNFKNVQRSMRLHLPFGIAQIGKSFRNEITPGNFIF 214

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            +          F+      +          ++ + +     +++       E+ +  Y+
Sbjct: 215 RTREFEQMEIEFFLKEESAYDIFDKYLNQIENWLVSACGLSLNNLRKHEHPKEELS-HYS 273

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             +            E   ++ R      +       S      F G   + +   +   
Sbjct: 274 KKTIDFEYNFLHGFSELYGIAYRTNYDLSVH---MNLSKKDLTYFDGQTKEKYVPHVIEP 330

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSV------APFKISLINIKAHDQVCRDACEKIYAR 371
            +G  R++ A++  +   + +   D               I +       +D  E+IY +
Sbjct: 331 SVGVERLLYAILTEATFIEKLENDDERILMDLKYDLAPYKIAVMPLVNKLKDKAEEIYGK 390

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS---KVEIKHRLTGIRED 428
           +  +     +D+ G  IG ++   D +G    + +    + D       I+ R +  ++ 
Sbjct: 391 ILDLNISATFDNSG-SIGKRYRRQDAIGTIYCLTIDFDSLDDQQDPSFTIRERNSMAQKR 449

Query: 429 MSLEEVINYASHR 441
           + L E+  Y + +
Sbjct: 450 IKLSELPLYLNQK 462


>gi|229027206|ref|ZP_04183484.1| Threonyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228734095|gb|EEL84811.1| Threonyl-tRNA synthetase [Bacillus cereus AH1272]
          Length = 101

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 38/99 (38%)

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
            + +  I   + V      ++  +L++ G  V  D   E++G +   A +   P  +++G
Sbjct: 3   PVQVKVIPVSNAVHVQYANEVAHKLAQAGIRVEEDIRDEKLGYKIREAQMQKVPYVLVIG 62

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            K +    V ++       + + L+  +        N +
Sbjct: 63  DKEMESEAVNVRKYGEEESKIVELDAFVESMKEEMKNRK 101


>gi|15220911|ref|NP_173238.1| threonyl-tRNA synthetase, putative / threonine--tRNA ligase,
           putative [Arabidopsis thaliana]
 gi|85701287|sp|Q8GZ45|SYTC_ARATH RecName: Full=Probable threonyl-tRNA synthetase, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|9665073|gb|AAF97275.1|AC034106_18 Strong similarity to threonyl-tRNA synthetase from Arabidopsis
           thaliana gb|Y14329 and is a member of the tRNA
           synthetase PF|00587 class II
 gi|332191535|gb|AEE29656.1| threonyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 458

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/346 (13%), Positives = 98/346 (28%), Gaps = 46/346 (13%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKD 159
                     E  + D           LP    +  +  R+E      G+ R R F+  D
Sbjct: 145 GFYYDSLYYGELGLND--NHFPNIEAKLPIRMAEFGVLHRNEDSGALGGMTRVRRFVQDD 202

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           A+ F    +  +     +      ++   G         + P       E    A+    
Sbjct: 203 AHIFCRVDQVEEE-VKGVLDFIDYVYRIFGFTYELT-LSTRPKDHIGDLETWAKAE---- 256

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                               DD      I E   A Y    D+    + D+     + + 
Sbjct: 257 -------------NDLEKALDDFGKPWVIKEGDGAFYGPKIDI---TVSDARNRKFQCAT 300

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKG 337
             ++    F             +     +     M    +     R+ A ++E       
Sbjct: 301 IQLD----FQLPA----CFKLKYLSEKNEMEAPVMIHSAVLGSIERMFAILLEHYKGIWP 352

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                           + +  + C    +++  ++++VG  V  D+    +  + A A  
Sbjct: 353 FWLSPR-------QAIVCSLSEDCSSYAKQVQKQINEVGYYVDIDESDRSLRKKVADARD 405

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSLEEVINYAS 439
             +   ++VG K V+  +V ++ R          +MS+E +++   
Sbjct: 406 APYNYILVVGQKEVATGQVTVRLREDPEGRKDLPEMSIESLLDEFK 451


>gi|291060038|gb|ADD72773.1| glycyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 474

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 66/473 (13%), Positives = 136/473 (28%), Gaps = 76/473 (16%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADL 79
           R G +   S       G++ + P+G    +N+     ++  R     + +    L   ++
Sbjct: 22  RRGFVFPSSEIYGGQGGVWDYGPMGIALKNNIAHAWWQDMTRLHDHIVGLDAAILMHPNV 81

Query: 80  WVESGRYDSYGKEMLRLA------------------------------------------ 97
           W  SG  D +   ++                                             
Sbjct: 82  WRTSGHVDHFSDPLVDCTVCKSRFRADQVAVPSAGGPCPQCGGALTGVRNFNLMFSTHMG 141

Query: 98  ---DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              +R     +   T + +  +       +   +PF   QI   FR+E+  +  + R+ E
Sbjct: 142 PTDERASLLYLRPETAQGIYVNYKNVLQTTRLKVPFGIAQIGKAFRNEIVTKNFIFRTCE 201

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F   +   F   P    H +          + + G++   MR  +       +HE    A
Sbjct: 202 FEQMEMQFFVR-PAEDTHWFEYWCAQRWAFYQKYGVRMNHMRWRTHA-----AHELAHYA 255

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                  +             N    D+        +    Y       +      +P  
Sbjct: 256 RAACDIEYAFPMGFRELEGVHNRGDFDLTRHAQHSGKDLC-YVDPDPNLDAAARRYVPCV 314

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
              SA       +F         + A     ++      Q G+   G MR+V        
Sbjct: 315 VETSAGLTRCVLMFLCDAYTEEYVQAPNVAFSETTQTADQEGAARTGEMRIV-------- 366

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
               +    +++P  ++ + +   D    D    +   L +      +D  G  IG ++ 
Sbjct: 367 ----LRLHPALSPTTVAFLPLVKKD-GLVDLARAVRDELRE-DFACDFDAAGA-IGKRYR 419

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             D +G P  V V  +   D  V ++ R +  +  +S   +  +      + R
Sbjct: 420 RQDEVGTPFCVTVDYQSKEDDTVTVRLRDSMAQRRVSRAFLAEFLRTEIKHYR 472


>gi|293363634|ref|ZP_06610386.1| glycine--tRNA ligase [Mycoplasma alligatoris A21JP2]
 gi|292552790|gb|EFF41548.1| glycine--tRNA ligase [Mycoplasma alligatoris A21JP2]
          Length = 446

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 52/428 (12%), Positives = 133/428 (31%), Gaps = 38/428 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIE--MSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG    DN+  I + E  R  A    +    L + ++WV SG   ++   ++   
Sbjct: 28  WDYGPLGSLLKDNIATIWKREFIRKEANNYLLDTKILMNPNVWVTSGHVSNFADPLIENK 87

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +        +E+  +I    + + +   F    ++     +         +  F  
Sbjct: 88  VNQKR-YRADKLIQEIDPEIIPEKMTNLQMQEFLTNNLKTYENSKTDWSSIKQFNLMFET 146

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIF-------------HRLGLKSIPMRAESGPIGG 204
           +     D   +          +                    ++G            I  
Sbjct: 147 QQGVIEDSKSKVYLRPETAQGIFVNFKNVSRVTRSKLPMGVGQIGKSFRNEVTPGNFIFR 206

Query: 205 DLSHEFIV----LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
               E +       +     ++       +   +      D I +    ++  + Y+A +
Sbjct: 207 TREFEQMELEVFCKEEQAQDLYKYYIQKAYNFATLVGIKKDSIRIREHDKEELSHYSAGT 266

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGI 319
                       E   ++ R     +     T  S      +      K     +    +
Sbjct: 267 SDIEFNFPFGWGELLGIANRTNFDLNAHMKATGES----LEYLDPETNKKIVPYVIEPSM 322

Query: 320 GAMRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R++ A+I  +++            + +   ++P+KI+++ +    +       +IY 
Sbjct: 323 GLDRLMLAIICDAYELEELENNDSRIVLKFNKELSPYKIAVLPLVKKLE---KEAREIYN 379

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L        +D+ G  IG ++   D +G    +      ++D  V +++R T  +  + 
Sbjct: 380 FLLDKNVSATYDETG-SIGKRYRRQDAVGTYWCLTYDYDSLNDQSVTLRNRDTMEQIRIK 438

Query: 431 LEEVINYA 438
           +++++ Y 
Sbjct: 439 IKDIVKYL 446


>gi|172037888|ref|YP_001804389.1| histidyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|226710879|sp|B1WVZ0|SYH_CYAA5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|171699342|gb|ACB52323.1| histidyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 433

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 62/421 (14%), Positives = 116/421 (27%), Gaps = 23/421 (5%)

Query: 37  KGIYSWLP--LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
            G    LP  +G      V  +  +  +R    E+  P  +   L+        D  GKE
Sbjct: 8   PGTRDILPEEIGY--WQYVETVATQILSRAMYYEIRPPIFEQTSLFERGIGEATDVVGKE 65

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   +DR D+++   P     +   +  +           +     FR E        R 
Sbjct: 66  MYTFSDRGDRSLTLRPEGTAGVVRAYLQNNLYAAGGVQRLWYCGPMFRYERPQAG---RQ 122

Query: 153 REFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           R+F            P                +  +     I    +          E +
Sbjct: 123 RQFHQIGLELIGTADPRADVEVIALATDILKTLGLQSLKLDINSVGDRND--RQNYREAL 180

Query: 212 VLA---DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           V        E            P+   ++       +N             S  H +++ 
Sbjct: 181 VNYFLPYKAELDTDSQDRLQRNPLRILDSKDKRTKEINQNAPSILEHLGDASKKHFDQVQ 240

Query: 269 DSLPENKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
             L +            RG++      F    S  + A      G  +   +   G G  
Sbjct: 241 QLLTDLGIEYNINPCLVRGLDYYTHTAF-EMISDDLGAQATVCGGGRYDGLVEELG-GNP 298

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                          ++     +P     I I +  +        +  +L K G  V  D
Sbjct: 299 TPAVGWAIGMERLIILLKQLQSSPDMTPDIYIVSRGEAAEGQGLILAQKLRKEGLTVELD 358

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             G   G QF  AD  G    +++G +  ++  V++K   +  ++ M+  E++       
Sbjct: 359 MSGSAFGKQFKRADRSGAIACIVLGEEEATNKTVQLKWLQSKEQQAMTQAELLTKVGELI 418

Query: 443 S 443
            
Sbjct: 419 E 419


>gi|330833959|ref|YP_004408687.1| glycyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
 gi|329566098|gb|AEB94203.1| glycyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
          Length = 571

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 63/145 (43%), Gaps = 7/145 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQV 360
             G   Y  +     G  R +   + S++    D   +  P ++ P+++++  +    + 
Sbjct: 419 EHGIKFYPHVVEPSFGVERCLYLSLLSAYKEKKDRVVLSLPKNIVPYQVAVFPLLDR-EE 477

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                +KIY  L     +V +DD G  IG ++A  D +G P  + V  + +SD  V ++ 
Sbjct: 478 LTAKAKKIYNMLKD-NFEVLYDDSG-SIGKRYARVDEIGVPYAITVDPQSLSDDTVTVRD 535

Query: 421 RLTGIREDMSLEEVINYASHRFSNN 445
           R T  +  +  +++  +    FS+ 
Sbjct: 536 RDTWEQVRIKTQDLNTFIQKLFSDK 560



 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAI---EMSVPTLQSADLWVESGRYDSYGKEM 93
            G+Y   P+G +  + +  + R       +    E+  P +  + +   SG  +++   +
Sbjct: 28  AGLYDIGPIGTRIRNKIVQMWRRIFVEENSEFVVEIETPMITPSKVLEASGHVENFTDPI 87

Query: 94  LRLADRNDKAMIYGPTHEEVM 114
           +     +          E V 
Sbjct: 88  VECTKCHKIYRADHLIEETVH 108


>gi|256070953|ref|XP_002571806.1| threonyl-tRNA synthetase [Schistosoma mansoni]
 gi|238656954|emb|CAZ28036.1| threonyl-tRNA synthetase, putative [Schistosoma mansoni]
          Length = 563

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +  L     H+ S G   +LP G    + + + IR E  + G  E+ 
Sbjct: 249 EEAAKRDHRKLGVEQKLF--FFHELSPGSCFFLPAGAHIYNTLVSFIRSEYWKRGFQEVI 306

Query: 71  VPTLQSADLWVESGRYDSYGK 91
            P + ++ LW +SG +  Y +
Sbjct: 307 TPNIYNSALWEQSGHWQHYSQ 327



 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/334 (11%), Positives = 83/334 (24%), Gaps = 46/334 (13%)

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
               ++E   R       E  +   +           +   ++ + +        K    
Sbjct: 244 WKHIQEEAAKRDHRKLGVEQKLFFFHELSPGSCFFLPAGAHIYNTLVSFIRSEYWKRGFQ 303

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
              +  I      E               +              D++     +     A 
Sbjct: 304 EVITPNIYNSALWE---------------QSGHWQHYSQLKESLDEVGLKWELNPGDGAF 348

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y    D+    + D+L    + +   ++    F    +++L  ++      G D+     
Sbjct: 349 YGPKIDI---NIMDALRRRHQCATIQLD----FQLPVRFNLSYASETDNPSGSDNNCNNI 401

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIW-----------------------PDSVAPFKISLI 352
           S     +      I    D                                        +
Sbjct: 402 SNTTNGISNHHEPINHQTDLNTHRPVIIHRAILGSVERIIAILTESYGGKWPFWLSPRQV 461

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            +      C +    +  RL   G  V  D D G  +  +     LL     ++VG K +
Sbjct: 462 LVVPVVSACDEYAIDVKNRLHDAGFMVSVDTDPGRTLNKKIRNGQLLQNNFILVVGEKEI 521

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++  V ++ R   +  +  +E VI       ++ 
Sbjct: 522 ANGTVNVRTRDNKVHGEHPVEHVIERFRQLAASR 555


>gi|218441904|ref|YP_002380233.1| histidyl-tRNA synthetase [Cyanothece sp. PCC 7424]
 gi|226737066|sp|B7KFP0|SYH_CYAP7 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|218174632|gb|ACK73365.1| histidyl-tRNA synthetase [Cyanothece sp. PCC 7424]
          Length = 430

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 120/415 (28%), Gaps = 21/415 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V  +  E  +R   +E+  P  +   L+        D  GKEM    DR 
Sbjct: 14  LPHEVGYWQQVERVAAEILSRALYLEIRPPIFEQTALFERGIGEGTDVVGKEMYTFKDRG 73

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+++   P     +   F  H           +     FR E        R R+F     
Sbjct: 74  DRSITLRPEGTAGVVRSFIEHNLYATGGVQRLWYTGPMFRYERPQAG---RQRQFHQIGL 130

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD----- 215
                    +      +    L     LGLK++ +   S     D  +    L D     
Sbjct: 131 ELLGSGDYRADVEVIALATDIL---QTLGLKNLKLDLNSVGNREDRQNYRQALVDYLTPY 187

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             +            P+   ++  +    +              S  H E++   L +  
Sbjct: 188 KAQLDPDSQDRLERNPLRILDSKDERTKIICQDAPSILEYLGTESKRHFEQVQQLLGDLN 247

Query: 276 R------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                     RG++      F  + S  + A      G  +   +   G G         
Sbjct: 248 IKYQLNPCLVRGLDYYTHTAFEIQ-SDDLGAQATVCGGGRYDGLVVELG-GPATPAVGWA 305

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                   ++      P     I I +  +        +  +L   G  V  D  G   G
Sbjct: 306 IGMERLILLLQQLQSTPTLTPDIYIVSRGEKAESQGLILAQKLRHWGLSVELDLSGSAFG 365

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            QF  AD  G    +I+G +   +  V++K   +  ++ ++  E+++       +
Sbjct: 366 KQFKRADRTGAIACLILGDQEAENQTVQLKWMTSSQQQTLTQVELLSQLEELKQS 420


>gi|288931794|ref|YP_003435854.1| glycyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
 gi|288894042|gb|ADC65579.1| glycyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
          Length = 565

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/306 (13%), Positives = 89/306 (29%), Gaps = 11/306 (3%)

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
                  +   +         +       + + +              ++  +      E
Sbjct: 251 RGIIAHELLAYFIGKTRRFLLEAGVKDEKLRFRQHKDDERAHYAVDCWDAEALTSYGWVE 310

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            + +AD  +  +     F    +       + I      V    A          +K+ +
Sbjct: 311 IVGIADRSDYDLSRHTKFSGEDLSVFVPFKEPIKVKRKKVVPNLAKLGPVYKDKAKKIAE 370

Query: 270 SL--PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            L   EN       +  G      +K    +    +   G+     +     G  R+   
Sbjct: 371 ELEKIENAGDEIEVVVDGEKIKL-SKEFYEVKEVEEEVHGERIIPHVVEPSFGLDRITYV 429

Query: 328 VIESSHDGKGIIWPDSVA-PFKISLINIKA------HDQVCRDACEKIYARLSKVGCDVF 380
           ++E + D   +   +      K  +  I          +  +    +I   L + G    
Sbjct: 430 LLEHAFDKDVVDGEERRVLRLKRWMAPIDVAVLPLLSREEFQKKALEIVEMLRENGIYTE 489

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +DD G  IG ++   D +G P  V V  +   D  V I+ R T  +  + +EE++     
Sbjct: 490 YDDSG-SIGRRYRRFDEVGVPFCVTVDHQTFEDDTVTIRDRDTTKQVRVKVEELVGVLKE 548

Query: 441 RFSNNR 446
             ++ +
Sbjct: 549 LLNSEK 554



 Score = 60.1 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 55/409 (13%), Positives = 110/409 (26%), Gaps = 61/409 (14%)

Query: 24  KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQS 76
           ++++R G + Q         G   + PLG      +  + R+       ++E+  PT+  
Sbjct: 6   EMLVRRGFLWQSFEIYGGMAGFIDYGPLGNAVRRKLENLWRKYFVINERSVEIDTPTIGV 65

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            ++++ SG  + +           D A+           D +     +    P       
Sbjct: 66  EEVFIASGHAEGFT----------DVAIECESCGRVFRADHYIKEKLNIEVDPTIERVWD 115

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHR 187
           +     L+   G    + F     +   + P   K  Y +          F      F  
Sbjct: 116 VIVEFNLKCECGGNFKKPFHFNLMFETKIGPGKGKKGYLRPETAQGIFIAFKRLSNYFRD 175

Query: 188 --LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS----------KDFMDFPIPSE 235
                 +   RA    I        +   +  E + FC           K   D     +
Sbjct: 176 KLPFGVAQIGRAYRNEISPRQGVIRLREFNQAELEFFCHPGEKKHPEFYKYANDVVTLVD 235

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEK----LFDSLPENKRVSARGIEVGHIFYFG 291
             D +  ++L   VE+    +   +    +     L   + + K    +  +     Y  
Sbjct: 236 KFDKEHRVTLKEAVERGIIAHELLAYFIGKTRRFLLEAGVKDEKLRFRQHKDDERAHYAV 295

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
             +      ++           +G        +      S  D    +        K   
Sbjct: 296 DCWDAEALTSY------GWVEIVGIADRSDYDLSRHTKFSGEDLSVFVPFKEPIKVKRKK 349

Query: 352 --INIKAHDQVCRDACEKIYARLSK---VG--CDVFWDDMGEQIGSQFA 393
              N+     V +D  +KI   L K    G   +V  D      G +  
Sbjct: 350 VVPNLAKLGPVYKDKAKKIAEELEKIENAGDEIEVVVD------GEKIK 392


>gi|255533134|ref|YP_003093506.1| glycyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
 gi|255346118|gb|ACU05444.1| glycyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
          Length = 495

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 63/487 (12%), Positives = 144/487 (29%), Gaps = 79/487 (16%)

Query: 20  IASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSV 71
           + SH      G + Q S        +Y +  LG +  +N+     +   +     + +  
Sbjct: 13  VISHAKE--YGFVFQSSEIYDGLSAVYDYGQLGAELKNNLKTYWWKAMVQLHENIVGIDS 70

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS----------- 120
                  +W  SG  D +   M+   D   +        E+ +    +            
Sbjct: 71  AIFMHPKVWKASGHVDGFNDPMIDNKDSKKR-YRADQLLEDKIARYEKDGKTDKAAKLQA 129

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR----EFLMKDAYSFDLTPEGSKHSY-- 174
            +              L  + E+       ++     +F +  +  F    EGS+  Y  
Sbjct: 130 EMDDALKAEDLQQLKTLIEQHEIACPVSGTKNWTEVRQFNLMFSTQFGAMAEGSEEVYLR 189

Query: 175 ---------------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA---DT 216
                              +       ++G            I      E + +      
Sbjct: 190 PETAQGIFVNFLNVQKSGRMKIPFGIAQIGKAFRNEVIARQFIMRMREFEQMEMQFFVRP 249

Query: 217 GETQVFCS-------KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           GE + + +       K  +    P+E   + D + L        A YA  +     +   
Sbjct: 250 GEDKKWFAYWKEARLKWHLALGTPAEKYRYHDHVKL--------AHYANAATDIEFEFPF 301

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD---HYVQMGSYGIGAMRVVA 326
              E + + +R           +   +          GK    +   +    IG  R+  
Sbjct: 302 GFKEVEGIHSRTDFDLSQHQEYSGKKMQYFDNDLDETGKPYGNYVPYVIETSIGLDRMFL 361

Query: 327 AVIESSHDGKG------------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             + ++ + +             +     +AP+K+++  +   D    +    I   L  
Sbjct: 362 LTLINAFEEQDLSEGDKQDSRTLLRLHPCLAPYKVAIFPLTKKD-GLPEKARAIMDNLK- 419

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +  +  +++    IG ++   D +G P  V V  + + D  V I+HR T  ++ + ++ +
Sbjct: 420 LDFNCIYEEKDA-IGKRYRRQDAIGTPFCVTVDHQTLEDDTVTIRHRDTMEQQRIEIKHL 478

Query: 435 INYASHR 441
               + +
Sbjct: 479 DELIASK 485


>gi|154287788|ref|XP_001544689.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150408330|gb|EDN03871.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 523

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 98/198 (49%), Gaps = 24/198 (12%)

Query: 257 AATSDVHNEKLFDSLPENKRVS---ARGIEVGHIFYFGTKYSLPMSATF----------- 302
            A  D  +    D        +      IE+ H F+ GT+YS  ++A+            
Sbjct: 319 GAKLDCISAAAGDQCSRCGEQAVQTHTAIELAHTFHLGTRYSKVLNASVAVPSTLLSNDS 378

Query: 303 --KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                      +QMG +GIG  R+++A+ +S  + KG+ WP ++APF+  +I     D+ 
Sbjct: 379 KANDNSTFSVPLQMGCHGIGVSRMISAIADSLANSKGLNWPRAIAPFEAMIIP----DKG 434

Query: 361 CRDACEKIYARLSKVGCDV---FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             +  EK+Y  +S++  D      DD  + +  +   ADL+G+P+ ++VG  +  ++K+E
Sbjct: 435 LEEEAEKVYDAISRINIDAVDAIIDDRDKNLAWKLRDADLIGYPVIIVVGKSWRMENKLE 494

Query: 418 IK-HRLTGIREDMSLEEV 434
           ++ HRL  +RE +SL ++
Sbjct: 495 VQCHRLNNLRETVSLPDL 512



 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 33/186 (17%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
            LPLG +  + +  ++ +                                   R  DR  
Sbjct: 1   MLPLGLRVQEKLERLVDKHM---------------------------------RTLDRKK 27

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
              +  PTHEE +T +    + SY++LP   YQI  K+RDE RPR G++R REF+MKD Y
Sbjct: 28  ARFLLAPTHEEEITSLVAGVMNSYKDLPLRVYQISRKYRDEPRPRQGLLRGREFIMKDLY 87

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +FD   E +  +YN +  +Y+R+F  L +  I   A+SG +GG LSHEF +    GE  +
Sbjct: 88  TFDYNAEMAIKTYNAVKETYVRLFDELRIPYIIATADSGNMGGSLSHEFHLPNPKGEDTI 147

Query: 222 FCSKDF 227
               + 
Sbjct: 148 ISCSNC 153


>gi|227112685|ref|ZP_03826341.1| histidyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 424

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 61/422 (14%), Positives = 128/422 (30%), Gaps = 23/422 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++  +  G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPAETALWQRIENSLKQVLSGYGYNEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF---RDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y   +       + R R      
Sbjct: 70  FDDRNGDSLTLRPEGTAGCVRAGIEHGILYNQEQRLWYVGPMFRYERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + ++           + +G      R     +     H+
Sbjct: 130 CEVFGLQGPDIDAELILMTARWWRVLGIADHVKLELNSIGSLDARARYREALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNE--- 265
             +  D            +D   P      +D   L   ++  + A + A  ++  +   
Sbjct: 190 DQLDEDCLRRMYTNPLRVLDTKNPQIQELLNDAPVLTDYLDDESRAHFEALGELLTQSGI 249

Query: 266 --KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGA 321
              +   L        R +        G + ++     + G       H      + +G 
Sbjct: 250 PYTVNPRLVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDGMVEQLGGHATPAVGFAMGL 309

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R+V  V   + D K     D+      +   +           EK+   L ++     +
Sbjct: 310 ERLVLLVQSVNPDFKAQPSVDAYLISSGTGTQV-----AAMQLAEKLRDALPQLKLMTNY 364

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              G     QFA AD  G  + +++G   V+  +V +K+   G ++ ++  +V +  +  
Sbjct: 365 --GGGNFKKQFARADKWGARVALVLGENEVAAGQVVVKNLSNGEQDTLAQADVASRLATL 422

Query: 442 FS 443
             
Sbjct: 423 LD 424


>gi|268609347|ref|ZP_06143074.1| histidyl-tRNA synthetase [Ruminococcus flavefaciens FD-1]
          Length = 446

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 57/412 (13%), Positives = 115/412 (27%), Gaps = 36/412 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        +  I RE     G  E+  PT ++ DL++ S     D   KEM  +  + 
Sbjct: 15  LPKDVYKWHTIEKIARETAESFGFGELRFPTFENTDLFLRSVGETTDVVQKEMYTVKAK- 73

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +      P            +      LP   Y I   FR E        R REF     
Sbjct: 74  ETEFTLRPEGTACAIRAMLQNGLLNEALPQRIYYIISCFRHERPQAG---RLREFHQFGI 130

Query: 161 YSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                    +                  +   + + +G  +   +           H   
Sbjct: 131 EMAGSAAPTADAEVILLAKTLLERLGLKNIELLINSIGCPNCRAKYHEALKAYFEPHIDE 190

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-----NSIVEQWTAPYAATSDVHNEK 266
           +     E  V      +D   P       D   +         + +T      +    E 
Sbjct: 191 LCDTCKERLVKNPMRLLDCKSPICKEIGKDAPVITDYLCEDCSDHFTKLQKYLTGFGIEY 250

Query: 267 LFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMR 323
             D  +        + +        G + ++     + G              +G+G  R
Sbjct: 251 KVDPRIVRGLDYYTKTVFEFVTTEIGAQGTVCGGGRYDGLIEQLSGQSTPALGFGMGIER 310

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           ++  + +   D       D                +   +   ++   L ++G    +D 
Sbjct: 311 LLLVMDKQGCDYLTPKKCDIYFATMG---------EAALEKAMQLTKDLRELGYCAEYDL 361

Query: 384 --MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
              G +   ++  A+ +     V++G   +   KV++K    G   +++L++
Sbjct: 362 MGRGIKPQMKY--ANKINAAFTVVIGDNELESGKVKLKEMSKGEETEVALDD 411


>gi|226320444|ref|ZP_03796010.1| threonyl-tRNA synthetase [Borrelia burgdorferi 29805]
 gi|226234086|gb|EEH32801.1| threonyl-tRNA synthetase [Borrelia burgdorferi 29805]
          Length = 263

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 5   KYFLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +L + +E   RD      +L L +    +   G+  + P G K    +    REE ++
Sbjct: 172 RSYLNLREEIKKRDHRKLGKELDLFSIH-EEIGPGLVFFHPNGAKIRALIEDFWREEHSK 230

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            G   +  P +  + LW  SG  D Y   M 
Sbjct: 231 NGYDILFTPHIGKSWLWQTSGHLDFYKDSMF 261


>gi|82947575|dbj|BAE52439.1| Prolyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
          Length = 471

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 62/425 (14%), Positives = 130/425 (30%), Gaps = 63/425 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P       L  E+   + + KEM  +
Sbjct: 9   GCMVIKPWGYGIWEAIQRDLDRRIKETGHENCYFPLFIPLSFLEKEAAHVEGFAKEMAVV 68

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                       +  L     ++    + E              
Sbjct: 69  T---------------------------HHRLVAEDGKLVPSGKLEEP------------ 89

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +      ++ +   SY  +   +   +  +R E  P     + EF+     
Sbjct: 90  ---LVVRPTSETIIGDAFARWIQSYRDLPMLVNQWANVVRWEMRPRIFLRTAEFL--WQE 144

Query: 217 GETQVFCSKDFMDFPIPSE---NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           G T    +++ MD  +          ++++++  IV +         +           E
Sbjct: 145 GHTAHATAEEAMDETLKMLEVYRVMAEEVLAMPVIVGE-----KPAHERFPGADKTYSIE 199

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 + ++ G   + G  +S   +  ++ A G + +    S+G+ + R++  VI S  
Sbjct: 200 AMMQDGKALQAGTSHFLGQHFSKAQNIRYQTAQGGEEFCYTTSWGV-STRLIGGVIMSHA 258

Query: 334 DGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGC-----DVFWDDMG 385
           D  G+  P  +AP +I  + I   D    +  D    I   LS          V  D   
Sbjct: 259 DDNGLRVPPRIAPKQIVFVPITRADGDEALIEDFLAPIVKDLSAQSFGGERLRVHVDRRP 318

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEEVINYASHRFSN 444
                +       G P+   VG + V+   V +  R   ++  +   +E+++ A+    +
Sbjct: 319 LAPPEKRWEWVKKGAPIICEVGPRDVAGGSVAMIRRDGELKGQITPKDELVSRAAAILED 378

Query: 445 NRPVL 449
            +  L
Sbjct: 379 IQKTL 383


>gi|108756931|ref|YP_631910.1| histidyl-tRNA synthetase [Myxococcus xanthus DK 1622]
 gi|108460811|gb|ABF85996.1| histidyl-tRNA synthetase [Myxococcus xanthus DK 1622]
          Length = 425

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 140/429 (32%), Gaps = 27/429 (6%)

Query: 31  MIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRY 86
           M  + +  KG+   LP   +   +V A  RE   R G  E+  P ++   L+V S     
Sbjct: 1   MSQKVAGVKGMNDLLPGEIEIWQHVEAQARELFGRFGYGEIRTPMVEDTALFVRSVGEET 60

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D  GKEM    D+ D+++   P         +  H  + +     ++     FR E    
Sbjct: 61  DIVGKEMYTFNDKADRSLSLRPEGTAPAARAYIEHSIANQEPLTRWFYAGPMFRYERMKT 120

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGG 204
               R R+F    A ++            +M    ++   RLGLK I +   S    +  
Sbjct: 121 G---RYRQFYQIGAEAYGAKEGAQD---VEMMDMVVQFLERLGLKDITLNINSLGDEVCR 174

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-------NSIVEQWTAPYA 257
              H  +V       +  C                              +++E    P  
Sbjct: 175 PTYHAKLVEYLQAHREALCGDCQKRMEKNPLRVLDCKNEKCQAIAAAGPNVLESLCEPCR 234

Query: 258 ATSDVHNEKLF----DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           A  D    KL       +   + V         +F F   +    +A+  GA G+   + 
Sbjct: 235 AHFDDVQRKLTALGVRHVVNPRMVRGLDYYTRTVFEFIASHPALGTASTVGAGGRYDKLV 294

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDS-VAPFKISLINIKAHDQVCRDACEKIYARL 372
                +G     A       D   ++  +S         + +   D    DA   + +RL
Sbjct: 295 K---SLGGPDAPAVGFACGLDRLVLLLKESGQQFTVRPDVFVAVADAGSHDAALVLASRL 351

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            + G  V +D  G  + SQ   AD       +++G    +  + ++K    G    ++L+
Sbjct: 352 RREGLRVEFDTRGGSLKSQMKRADKSSAEFTLVLGEAERTSGQAKLKPMAGGEPIPVALD 411

Query: 433 EVINYASHR 441
           EV      R
Sbjct: 412 EVARVVRER 420


>gi|312601357|gb|ADQ90612.1| Prolyl-tRNA synthetase [Mycoplasma hyopneumoniae 168]
          Length = 290

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 73/172 (42%), Gaps = 2/172 (1%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E    + R ++     + G  ++      +K  + K       S+G+ + R++ A++   
Sbjct: 26  EAMMQNFRALQSATAHFLGQNFAKNFEIFYKNKENKSQIPFQTSWGL-STRLIGAIVMVH 84

Query: 333 HDGKGIIWPDSVAPFKISLI-NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            D  G+I+P  +AP ++ ++      +Q  +   ++I   L         DD  +QIG +
Sbjct: 85  SDDNGLIFPPKIAPIQVDILEFFSKKNQEVKIFSKRIAKILKNAKISYKIDDTDQQIGYK 144

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              +++ G P+++ +G   V ++++ +  R    +   +++ +         
Sbjct: 145 INNSEVHGAPIRIEIGPNEVKNNQICLVRRDNHQKFFFNIDLLKEKCRKILE 196


>gi|284166966|ref|YP_003405245.1| glycyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
 gi|284016621|gb|ADB62572.1| glycyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
          Length = 593

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 101/364 (27%), Gaps = 17/364 (4%)

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           +    E+    D            +  +T    S                      +   
Sbjct: 224 EFTQAELEYFVDPETDEPDLSTVADVEVTLYPASEQNEEDGEEIRTTIGDAVEEGIISSP 283

Query: 147 FGVM-RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           +            DA   D+     +   +     Y         +      E       
Sbjct: 284 WVAYFLGVAKPWYDAVGVDMDRFRFRQHLSGERAHYASDCWDAESEVDGNWIEMAGFAYR 343

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             ++     +  + +    K + +       T   D+       E      A    + + 
Sbjct: 344 GDYDLSKHDEYSDDRFTIFKQYDEPKTVERATVDPDMS--YLGPEFGGDAQAVVQKLDDL 401

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
              D            +E G       + +       +   G+     +     G  R+V
Sbjct: 402 AARDRAAFEGDTVEIDLE-GETHELPVEKTRFAVEE-QTEAGEHITPHVVEPSFGVDRLV 459

Query: 326 AAVIESSH--------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
             V+  ++        +   +     VAP  + +  +  +D+       +I A L +VG 
Sbjct: 460 YTVLHHAYREDEVDGEERTYLDLEPEVAPTFVGVFPL-QNDEELEAQANEIVADLREVGL 518

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGIREDMSLEEVI 435
            V +DD G  IG ++   D +G P  V V  + V D    V ++ R T  ++ + ++++ 
Sbjct: 519 SVTYDDSG-NIGRRYRRQDEVGTPFCVTVDYETVEDEETTVTVRERDTTDQKRLPVDDLA 577

Query: 436 NYAS 439
              S
Sbjct: 578 ETLS 581



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/401 (12%), Positives = 97/401 (24%), Gaps = 37/401 (9%)

Query: 24  KLMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQS 76
           +L  R G   Q S       G Y++ P G     NV    R+      G +E+  PT+  
Sbjct: 22  ELAKRRGYFFQSSGAYGGVGGFYTFGPQGAALKGNVEDAWRDRFAVAEGNMEIDAPTIMP 81

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             ++  SG  D +   ++   +  +         +    +   S            Y++ 
Sbjct: 82  EPVFEASGHLDGFDDMLIECPECGESHRADHVVEDNTEYEDAESLPIPEVEEVIAEYELV 141

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY------------NKMFVSYLRI 184
                       V         +    D  P   +                         
Sbjct: 142 CPSCGAGLAGQAVDTFNLMFATNIGPGDSDPGYMRPETAQGIFVEFPRLKEYARNQLPFG 201

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH-----EFIVLADTGETQ----------VFCSKDFMD 229
             ++G       +    I           E+ V  +T E            ++ + +  +
Sbjct: 202 VTQIGRAYRNEISPRRSIIRTREFTQAELEYFVDPETDEPDLSTVADVEVTLYPASEQNE 261

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                  T   D +    I   W A +   +    + +   +   +       E  H   
Sbjct: 262 EDGEEIRTTIGDAVEEGIISSPWVAYFLGVAKPWYDAVGVDMDRFRFRQHLSGERAHYAS 321

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
                   +   +    G  +                  I   +D    +   +V P   
Sbjct: 322 DCWDAESEVDGNWIEMAGFAYRGDYDLSKHDEYSDDRFTIFKQYDEPKTVERATVDPDMS 381

Query: 350 SLINIKAHD-QVCRDACEKIYARLSKV--GCDVFWDDMGEQ 387
            L      D Q      + + AR      G  V  D  GE 
Sbjct: 382 YLGPEFGGDAQAVVQKLDDLAARDRAAFEGDTVEIDLEGET 422


>gi|312134503|ref|YP_004001841.1| histidyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
 gi|311774554|gb|ADQ04041.1| histidyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
          Length = 421

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 63/420 (15%), Positives = 124/420 (29%), Gaps = 23/420 (5%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEM 93
           P G K            V    RE     G  E+  PT +  +++        D   KEM
Sbjct: 6   PKGTKDVLPEESYMWQYVENKFREICKLYGYQEVRFPTFEYTEVFQRGVGETTDIVQKEM 65

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
               D+  +++   P        +F  H  + R +P  F+ I   FR E           
Sbjct: 66  YTFLDKGGRSITLRPEGTASTARLFIEHGFASRPMPQRFFYIISAFRYENTQGGRFREFH 125

Query: 154 EFLMKDAYSFDL-TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           +F +++  S    T           F S       + + SI           +L   F  
Sbjct: 126 QFGIENFGSSSPVTDAEVISLAYNFFTSIGLDNITVNINSIGCPVCRKEYMKNLKEYF-- 183

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            A+  +    C + F   P+   +   ++   +     +           H EK+   L 
Sbjct: 184 SANLYKLCTTCHQRFDKNPMRILDCKEENCKLIAKDAPKPIDYLCDDCKNHFEKVKTYLD 243

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH--------YVQMGSYGIGAMRV 324
                      +     + T+    +  T    +              Q+G   I  +  
Sbjct: 244 SAMVAYKVDPFIVRGLDYYTRTVFEVVVTVLDKELAICGGGRYDNLIEQIGGPSIAGIGF 303

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              V       +      +        + +   + +      +I  +L   G     ++M
Sbjct: 304 AIGVERLLMLLEQNGLLPAKPQIPEVFVAVVGDNSI--KKAFEIANKLRFEGISTVIEEM 361

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              + SQ   AD +G    +I+G   ++    +I++  T   E + ++   +Y   +   
Sbjct: 362 SRSLKSQMKYADKIGCQFSIIIGDDEIAKGVCKIRNMRTSSEEIVEIKNACHYLKKQLQK 421


>gi|256845829|ref|ZP_05551287.1| histidyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
 gi|256719388|gb|EEU32943.1| histidyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
          Length = 413

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 58/397 (14%), Positives = 113/397 (28%), Gaps = 17/397 (4%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + ++     G   +  P  +  +L+        D   KEM    DR D+++   P +
Sbjct: 24  ISNVAQKMFENYGYNFVKTPIFEETELFKRGIGEATDVVEKEMYTFKDRGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEG 169
              +   +  +    +     FY     FR E        R REF       F + +P+ 
Sbjct: 84  TASLVRCYLENAIYAKEEISRFYYNGSMFRYERPQAG---RQREFNQIGLEVFGEKSPKV 140

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                   +    ++        I       S  I  +   E        +    C    
Sbjct: 141 DAEVIAIGYKFLEKLGITDLEVKINSVGSKESRTIYREKLIE-HFSKHLDDMCDDCKDRI 199

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
              P+   +   D                      H E +   L        +  E   +
Sbjct: 200 NRNPLRLLDCKVDKDKDFYKSAPNIIDFLFEDERKHYEDVKKYL---NVFGIKYTEDPTL 256

Query: 288 FYFGTKYSLPMSATFKGADGKDHY-----VQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
                 YS  +        G                    + + AV  ++   + ++   
Sbjct: 257 VRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAVGFATGVERIMMLLG 316

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
              P     + I    +   +   KI   L      V+ D   + + S    AD L    
Sbjct: 317 ENYPKNNPDVYIAWLGENTSETALKIAESLRDNDIKVYIDYSEKGMKSHMKKADKLSVRY 376

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +I+G   ++   V +K   T  ++++ +EE+IN   
Sbjct: 377 CIILGEDELNKGIVLLKDFSTREQKEVKIEEIINQIK 413


>gi|323499821|ref|ZP_08104780.1| histidyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
 gi|323315062|gb|EGA68114.1| histidyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
          Length = 422

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 121/412 (29%), Gaps = 16/412 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        +   ++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKLENTVKNVISAYGYNEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFL 156
             ++   P            +    R+    +Y +   FR E       R       E  
Sbjct: 75  GDSLTLRPEGTAGCVRSCIENSLINRDEQRLWY-MGPMFRHERPQKGRYRQFHQCGVEVF 133

Query: 157 MKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             D    D           +            + +G         +  I     H  I+ 
Sbjct: 134 GIDGPDVDAELIMMTARLWRELGIDKHVRLELNSIGSLDDRANYRTALIAFLEQHIDILD 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLP 272
            D            +D   P       D   L+  + E+    +A   ++ +    +   
Sbjct: 194 DDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSDYLGEESKEHFAGLCELLDAAGIEYTV 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             + V         +F +    +  + A      G  +   +   G  A   V   +   
Sbjct: 254 NERLVRGLDYYNRTVFEW---ITESLGAQGTVCGGGRYDGLVEQLGGKATPAVGFAMGLE 310

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGS 390
                +   +     +   + +    +    A  K+   L +   G  V     G     
Sbjct: 311 RLVLMLETLELTDVRRSVDVYMVTAGEGTMLAGMKLAELLREQVPGLRVMNHFGGGSFKK 370

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           QF  AD +G  + +++G   V+D+ V +K  + G +E  S  +VI   +   
Sbjct: 371 QFKRADKVGAAVALVLGENEVADNSVVLKDLIGGTQETYSQADVIAKLAELV 422


>gi|307132059|ref|YP_003884075.1| histidyl tRNA synthetase [Dickeya dadantii 3937]
 gi|306529588|gb|ADM99518.1| histidyl tRNA synthetase [Dickeya dadantii 3937]
          Length = 424

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 63/425 (14%), Positives = 127/425 (29%), Gaps = 29/425 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPAETALWQRIEDSLKQVLRGYGYSEIRMPIVEQTSLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGILYNQEQRLWYI-GPMFRHERPQKG---RYRQF 125

Query: 156 LMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                  F    P+            +  +     +        S           I   
Sbjct: 126 HQLGCEVFGLKGPDVDAEMILMTARWWRVLGIDQHVSLELNSIGSLDARARYREALIAFL 185

Query: 215 DTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD--- 269
           +  + Q+   C +     P+   ++    + +L       T      S  H ++L +   
Sbjct: 186 EEHKDQLDEDCLRRMYTNPLRVLDSKNVQVQALLDNAPVLTDYLDDDSRAHFDELCELLT 245

Query: 270 ----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                      L        R +        G++ ++     + G   +       + G 
Sbjct: 246 QSGIPYKVNPRLVRGLDYYNRTVFEWVTSSLGSQGTVCGGGRYDGMVEQLGGSSTPAVGF 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCD 378
                   ++             +       LI+  A  Q       EK+   L ++   
Sbjct: 306 AMGLERLVLLV----QTVNPAFAAQPGVDAYLISSGAGTQHAAIQLAEKVRDALPQLKLM 361

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +   G     QFA AD  G  + +++G   V+  +V +K+  +G +E ++  +V    
Sbjct: 362 TNY--GGGNFKKQFARADKSGARVALVLGETEVAAGQVVVKNLTSGEQETLAQADVAARL 419

Query: 439 SHRFS 443
           +   +
Sbjct: 420 AALLN 424


>gi|37525333|ref|NP_928677.1| histidyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|39932035|sp|Q7N705|SYH_PHOLL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|36784760|emb|CAE13670.1| histidine-tRNA ligase [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 425

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 63/424 (14%), Positives = 128/424 (30%), Gaps = 26/424 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +  I++      G  E+  P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTVIWQRIETILKRVLAGYGYSEIRTPIVEQTPLFRRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P +          H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FDDRNGESVTLRPENTAGCVRAGIEHGLLYNQEQRVWYL-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
               A  F    P+            +  +     +        S     +     +   
Sbjct: 126 YQLGAEVFGLQGPDIDAELILLTARWWRELGIFEHVTLELNSIGSLAARANYREALVAFL 185

Query: 215 DTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +  + ++   C +     P+   ++   ++  L +   +      A S  H + L   L 
Sbjct: 186 EQHQDKLDEDCKRRMYSNPLRVLDSKNPEVQQLLNDAPELCDYLDAESKEHFDGLCALLD 245

Query: 273 ------ENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                    +   RG++     +F       G + ++     + G    +      +  +
Sbjct: 246 GAGIKYRINQRLVRGLDYYNRTVFEWVTTALGAQGTVCAGGRYDGLV--EQLGGRPTPAV 303

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G    +  +I    +       +            +   Q      E++   L +    +
Sbjct: 304 GFAMGMERLILLVQEINPAFVAERTVADVYLASFGEGSQQAALILAEQVRDTLPQ--LRL 361

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             +  G     Q   AD  G  + +I+G   V   +V IK   TG ++ +   E+     
Sbjct: 362 MMNHGGGNFKKQLGRADKQGAKIALILGEDEVRSGQVAIKDLRTGEQQTLPQSEIAARLV 421

Query: 440 HRFS 443
              S
Sbjct: 422 ELLS 425


>gi|225159077|ref|ZP_03725385.1| glycyl-tRNA synthetase [Opitutaceae bacterium TAV2]
 gi|224802335|gb|EEG20599.1| glycyl-tRNA synthetase [Opitutaceae bacterium TAV2]
          Length = 508

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 56/495 (11%), Positives = 136/495 (27%), Gaps = 88/495 (17%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNV-----NAIIREEQNRTGAIEMSVPTLQS 76
           R G +   S       G + + PLG +   N+     N  +R   +  G   +    +  
Sbjct: 21  RRGFVFPSSEIYGGLNGFFDYGPLGVELKKNIRDCWWNDFVRRRDDVVG---IESSIIMH 77

Query: 77  ADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
             +W  SG    +   ++         R D+        +        +           
Sbjct: 78  PKVWHASGHVGGFTDPLVDCKASKQRYRADQLFFAAVVVDGTTHGYVSALENEDIPGTLQ 137

Query: 132 FYQIQLKFRDELRPRFGVMRSREFL----------------------------------- 156
                 K +  ++     ++ +EF                                    
Sbjct: 138 AAAETFKRKKAIQGTLAPVQPKEFTEATAEQIPLIPSPATGEPGSLTAPRDFNMMFETHV 197

Query: 157 ----------MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
                          +        K+  +   V       + G            I    
Sbjct: 198 GALRDDSSLTWLRPETAQGMFVDFKNVVDTGRVKLPFGIAQTGKSFRNEITPRNFIFRSR 257

Query: 207 SHEFIVL----ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSD 261
             E + +     +  +   +            ++    +         +   A Y+  + 
Sbjct: 258 EFEQMEMQYFIHEDDDWAKWHRHWINWCANWLKSIGLPESHLSEFDHPKAKLAFYSRGTT 317

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               K    + E   ++ARG           K+S      F  A  K     +    +G 
Sbjct: 318 DIMFKYPFGVQELWGIAARGNYDLTQH---AKHSGKPQEIFDEATKKKFVPHVIEPAVGL 374

Query: 322 MRVVAAVIESSHDGKGI-------------IWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            R+  AV+ + +  + +                  +AP K++++ +  + +      +++
Sbjct: 375 DRIFLAVLCAGYSEEEVKDEKGNVEKRVVLRLSPRIAPVKVAVLPLLKNKEELTARAQEL 434

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS-DSKVEIKHRLTGIRE 427
           Y ++ +     F+D+ G  +G ++   D +G P  V +  + +  D    ++ R T  ++
Sbjct: 435 YKKIKRK-YTAFYDESGA-VGRRYRRQDEIGTPWCVTIDFETIEKDGTFTLRDRDTMQQK 492

Query: 428 DMSLEEVINYASHRF 442
            ++  E+      + 
Sbjct: 493 RITEAELFALLDEQV 507


>gi|308187769|ref|YP_003931900.1| Histidyl-tRNA synthetase [Pantoea vagans C9-1]
 gi|308058279|gb|ADO10451.1| Histidyl-tRNA synthetase [Pantoea vagans C9-1]
          Length = 426

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 60/424 (14%), Positives = 119/424 (28%), Gaps = 25/424 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +  ++++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTALWQRIEGVLKQTLASYGYSEIRLPLVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMR 151
             DRN +++   P            H   Y      +Y +   FR E       R     
Sbjct: 70  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWY-MGPMFRYERPQKGRYRQFYQI 128

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             E         D         + K            + +G            +     H
Sbjct: 129 GVEVFGLQGPDIDAELIMLNARWWKSLGISEHVRLELNSIGSLEARAHYRDALVAFLEQH 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-----EQWTAPYAATSDV- 262
           + ++  D            +D   P      +D   L   +     E ++   A   D  
Sbjct: 189 KDVLDEDCKRRMYSNPMRVLDSKNPDVQQLLNDAPQLGDYLDDESREHFSGLCALLDDAG 248

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +  +   L        R +        G++ ++     + G   +       + G    
Sbjct: 249 ISYTVNQRLVRGLDYYNRTVIEWVTDSLGSQGTVCGGGRYDGLVEQLGGRATPAVGFAMG 308

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVF 380
                ++                P     + + A  Q  + A  ++  +L        + 
Sbjct: 309 MERLVLLV-------QAVNPEFEPTSNVDVYVIASGQGVQSAAMQLAEKLRDEAPELRLM 361

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +  G     QFA AD  G  + +++G   V   +V IK    G ++ +   E       
Sbjct: 362 TNFGGGNFKKQFARADKWGARVALVLGEDEVKAGQVVIKDLRRGEQQTLDQAEAAAVLRT 421

Query: 441 RFSN 444
              +
Sbjct: 422 LLQS 425


>gi|295426088|ref|ZP_06818758.1| histidine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
 gi|295064257|gb|EFG55195.1| histidine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
          Length = 428

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 66/424 (15%), Positives = 127/424 (29%), Gaps = 20/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    + + V         R    E+  P  ++ +++  S     D   KEM  
Sbjct: 8   GTVDILPGTSDSWEKVEQTASNFFKRANYREIRTPMFENYEVFARSSGESSDIVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +   +  +         PF  + I   FR E        R R
Sbjct: 68  FDDKGGRHIALRPEGTAGVVRAYVENKLYGPEIVKPFNVFYIDPTFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSF-DLTPEGSKHSYNKMFV--------SYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF   +P     +              +Y    + LG  ++        +  
Sbjct: 125 EFHQIGVESFGSSSPLADVETIMMGHDLLAELGVKNYELHINSLGNAAVRKAYHDALVDY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               +  +  D+           +D     +     D   +   ++        T     
Sbjct: 185 FTPLKDQLSEDSQRRLSMNPLRILDSKAEEDQKFLPDAPKIREFLDDDAKKNFETITNTL 244

Query: 265 EKL-FDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +L  D + ++  V       G IF F      L  SAT     G+  ++     G    
Sbjct: 245 TQLGIDYVIDDDLVRGLDYYTGVIFEFMVADKKLWESATTILGGGRYDHLVEEFGGPATP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E            ++         I    +       +I   L K G    +D
Sbjct: 305 AVGFGIGEERLMLVLKEQNPALFEDNGIDFFITNIGEGTEMKTVEIARLLRKQGFKTQYD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV--INYASH 440
              +++  QF  A+ +     + +G+K + +  + IK    G   D+SL+++  +     
Sbjct: 365 VDQKKLKQQFRKANRVHAKYVITLGAKELENGTLNIKRLADGKTIDLSLDDLNDMQTVME 424

Query: 441 RFSN 444
           +  +
Sbjct: 425 KLKD 428


>gi|242240154|ref|YP_002988335.1| histidyl-tRNA synthetase [Dickeya dadantii Ech703]
 gi|242132211|gb|ACS86513.1| histidyl-tRNA synthetase [Dickeya dadantii Ech703]
          Length = 424

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 53/422 (12%), Positives = 122/422 (28%), Gaps = 23/422 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++     G  E+  P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTALWQRIEDSLKQVLRNYGYSEIRTPLVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRND+++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FDDRNDESLTLRPEGTAGCVRAGIEHGILYNQEQRLWYLGPMFRYERPQKGRYRQFHQMG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + ++           + +G      R     I     H+
Sbjct: 130 CEVFGLKGPDIDAELILLTARWWRVLGIDQHVSLELNSIGSLEARARYRDALIAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      D    +   +++ +   +    ++  +   
Sbjct: 190 EQLDEDCLRRMYTNPLRVLDSKNPQVQALLDGAPVMVDYLDEESREHFNGLCELLTQSGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 TYTINPRLVRGLDYYNRTVFEWVTSSLGSQGTVCGGGRYDGMVEQLGGAATPAVGFAMGM 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++             +          + +     + A  ++   L        +  
Sbjct: 310 ERLVLLV-------QTINPAFTVQSGVDAYLISSGAGTQQAAIRLAEELRDALPWLKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + +++G   V+  +V +K+  +G +E ++  +V+   +  
Sbjct: 363 NYGGGNFKKQFARADKSGARVALVLGENEVAAGQVVVKNLTSGEQEALAQSDVVARLAAL 422

Query: 442 FS 443
             
Sbjct: 423 LE 424


>gi|162319780|ref|YP_422998.2| prolyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
 gi|114152208|sp|Q2W136|SYP_MAGMM RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
          Length = 500

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 62/425 (14%), Positives = 130/425 (30%), Gaps = 63/425 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG      P       L  E+   + + KEM  +
Sbjct: 38  GCMVIKPWGYGIWEAIQRDLDRRIKETGHENCYFPLFIPLSFLEKEAAHVEGFAKEMAVV 97

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                       +  L     ++    + E              
Sbjct: 98  T---------------------------HHRLVAEDGKLVPSGKLEEP------------ 118

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +      ++ +   SY  +   +   +  +R E  P     + EF+     
Sbjct: 119 ---LVVRPTSETIIGDAFARWIQSYRDLPMLVNQWANVVRWEMRPRIFLRTAEFL--WQE 173

Query: 217 GETQVFCSKDFMDFPIPSE---NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           G T    +++ MD  +          ++++++  IV +         +           E
Sbjct: 174 GHTAHATAEEAMDETLKMLEVYRVMAEEVLAMPVIVGE-----KPAHERFPGADKTYSIE 228

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 + ++ G   + G  +S   +  ++ A G + +    S+G+ + R++  VI S  
Sbjct: 229 AMMQDGKALQAGTSHFLGQHFSKAQNIRYQTAQGGEEFCYTTSWGV-STRLIGGVIMSHA 287

Query: 334 DGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGC-----DVFWDDMG 385
           D  G+  P  +AP +I  + I   D    +  D    I   LS          V  D   
Sbjct: 288 DDNGLRVPPRIAPKQIVFVPITRADGDEALIEDFLAPIVKDLSAQSFGGERLRVHVDRRP 347

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEEVINYASHRFSN 444
                +       G P+   VG + V+   V +  R   ++  +   +E+++ A+    +
Sbjct: 348 LAPPEKRWEWVKKGAPIICEVGPRDVAGGSVAMIRRDGELKGQITPKDELVSRAAAILED 407

Query: 445 NRPVL 449
            +  L
Sbjct: 408 IQKTL 412


>gi|326390137|ref|ZP_08211698.1| histidyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325993785|gb|EGD52216.1| histidyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 418

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 50/404 (12%), Positives = 123/404 (30%), Gaps = 19/404 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  +IRE  +  G  E+  P  +  +L++       D   KEM    D+  +++   
Sbjct: 20  WQYIEGLIREICDVYGFKEIRTPGFEHTELFLRGVGESTDIVRKEMYTFTDKGGRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
                     F  H       P   Y I   +R E      +    +F ++   +   + 
Sbjct: 80  AEGTSPAVRAFIEHNLYAETQPTKLYYITPVYRYERPQSGRLREHHQFGVEIFGAKSASA 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +    S     +  L + +     +             +  +F+        +  C    
Sbjct: 140 DAEVISVAMTLLKKLGLNNLELRINSIGCPVCRKNYNKVLKDFL----RDNLEYLCDDCK 195

Query: 228 MDFPIPSENTDFDDIISL-----------NSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           + + I         + S            + + +   + +       +   +D + + + 
Sbjct: 196 VRYEINPLRVLDCKVESCQRITKDAPLITDYLCDDCKSHFEELQKYLDIMGYDYIIDPRI 255

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V  RG++      F        +       G+   +     G     V   +        
Sbjct: 256 V--RGLDYYTKTAFEIISKDIGAQGTVCGGGRYDGLIEECGGPSMPGVGFGMGLERLLIT 313

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                  +   +   + I    +  +     +  +L   G  V  D+M   + +Q   A+
Sbjct: 314 LEQNGIEIPKPEGVDLFIAYVGEEAKLFTFALANKLRFNGLKVERDNMDRSLKAQMKYAN 373

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            L     +++G + + ++KV++K    G   ++S++E+     +
Sbjct: 374 KLNAKFAIVIGEEEMKENKVKLKDMRVGSEVEISIDEIEQRIKN 417


>gi|213403660|ref|XP_002172602.1| glycyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
 gi|212000649|gb|EEB06309.1| glycyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
          Length = 653

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 91/307 (29%), Gaps = 20/307 (6%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                +   +     K   +   V + +              ++         E +  AD
Sbjct: 326 TTLGYFMARIYEFLKKIGIDMNRVRFRQHMSNEMAHYACDCWDAEIHCSYGWIECVGCAD 385

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                +         P+  +    + I+    +VE     +        + + +++    
Sbjct: 386 RSAYDLSVHSAATKTPLIVQEKLAEPIVVDEFVVEVNKKKFGPKFKRDAKAVEEAML-AW 444

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFK-------------GADGKDHYVQMGSYGIGAM 322
             + R  +   +   G          F                  + +   +     G  
Sbjct: 445 TQAERQAKAEELASTGKIPVSVNGVNFVVESELVTIEKQKRTEHIRSYIPNVIEPSFGLG 504

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA------HDQVCRDACEKIYARLSKVG 376
           R++  ++E S+  +       V  F  ++  IKA       +        ++ A+L + G
Sbjct: 505 RILYVLMEHSYWTRPEDVNRGVLSFPPAVAPIKALIVPLSKNAEFDPLVRQLSAKLRRNG 564

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                DD    IG ++A  D LG P  + V    + D+ V ++ R +  +   + +E++ 
Sbjct: 565 ISNKVDDSNANIGRRYARNDELGTPFGITVDFDSLKDNTVTLRERDSTKQIRGTDDEIVA 624

Query: 437 YASHRFS 443
                 +
Sbjct: 625 TLVQLIA 631



 Score = 47.4 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 7/79 (8%)

Query: 24 KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQS 76
          +LM +               G++ + P G     N+  + R         +E+    L  
Sbjct: 17 ELMKKRFFFAPSFQIYGGISGLFDYGPPGSALQTNIVELWRRHFVIEESMLEVDCSMLTP 76

Query: 77 ADLWVESGRYDSYGKEMLR 95
           ++   SG  D +   M +
Sbjct: 77 HEVLKTSGHVDKFADWMCK 95


>gi|295667908|ref|XP_002794503.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
 gi|226285919|gb|EEH41485.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
          Length = 589

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 27/190 (14%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-------------------KGADGK 308
                EN   +   IE+ H F+ GT+YS  ++A+                    + +   
Sbjct: 393 CSKCGENSVETHTAIELAHTFHLGTRYSEVLNASVAIPSSILRGSLTTERTALAQSSRTV 452

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              ++MG +GIG  R++AAV ++  D KG+ WP            I   D+      E++
Sbjct: 453 SVPLEMGCHGIGVSRMIAAVADTLADPKGLNWP----RVISPFDVIIISDRELEKEAEQV 508

Query: 369 YARL---SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           Y  L    K   D   DD  + +  +   ADL+G+P+ +++G  +  D+K+EI+ R    
Sbjct: 509 YDTLMESQKADVDAIIDDREKSLTWKLRDADLIGYPVIIVIGKSWKRDNKLEIQCRRLEN 568

Query: 426 -REDMSLEEV 434
            RE +SL+++
Sbjct: 569 FRETVSLQDL 578



 Score = 86.3 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 92/191 (48%), Gaps = 33/191 (17%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G++  LPLG +  + +  +I +                                   R 
Sbjct: 55  SGVFHLLPLGLRVQEKLERLIDKHM---------------------------------RT 81

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            DR +   +  PTHEE +T +  S + SYR+LP   YQ   K+RDE RPR G++R REF+
Sbjct: 82  LDRKEARFLLAPTHEEEITSLVESSVSSYRDLPLRLYQFGRKYRDEPRPRQGLLRGREFM 141

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           MKD Y+FD + E +  +YN +  +Y+R+F+ L L  I   A+SG +GG LSHEF +    
Sbjct: 142 MKDLYTFDYSAEKAIETYNAVKEAYIRLFNELKLPYIVAAADSGNMGGSLSHEFHLPNSK 201

Query: 217 GETQVFCSKDF 227
           GE  +      
Sbjct: 202 GEDTIVSCSSC 212


>gi|159905440|ref|YP_001549102.1| histidyl-tRNA synthetase [Methanococcus maripaludis C6]
 gi|229558695|sp|A9A947|SYH_METM6 RecName: Full=Histidyl-tRNA synthetase
 gi|159886933|gb|ABX01870.1| histidyl-tRNA synthetase [Methanococcus maripaludis C6]
          Length = 418

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 68/421 (16%), Positives = 132/421 (31%), Gaps = 23/421 (5%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSY 89
           M  +  KG   +LP   K   N+   +R+  +     E++ PT +S +L   ++G  +  
Sbjct: 3   MFQKP-KGTRDFLPEEMKKRKNIEKKLRKVFDSYNFSEINTPTFESFELLSKKTG--EEI 59

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            K++    D  D+ M   P     +   + +  K+    P   Y     FR E       
Sbjct: 60  RKQLFVFKDHGDREMGLRPELTSSVARFYINEFKN-TPKPVKLYYFTNCFRYENPQAG-- 116

Query: 150 MRSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP--------MRAESG 200
            R REF    +       P       N        I     +             + +  
Sbjct: 117 -RYREFWQMGSELIGSKKPIADAEVINLAIEGLKEINMDFEINIGHLGVLKGVFEKYDLS 175

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS------LNSIVEQWTA 254
              G+     I   D    +   S+   +  I      F+ +        ++ + E+ + 
Sbjct: 176 DDEGNEIRRLIDKEDMDGLKTALSRIESEKNIEISEKVFEVLELKGGREVISKLKEKLSE 235

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
             ++ + + N         ++ +   GI  G  +Y G  + +                  
Sbjct: 236 FESSVTALENLDSILEFVPHEYIINFGIARGLDYYTGMVFEIYGKREGARQVCGGGRYDN 295

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                      A       D   +   D     +   +       +  + C KI   L  
Sbjct: 296 LIELFEGEPSPAVGFAYGFDRIMLNIDDFEVEEESIFVVPVKSSDMLLNECLKIAKTLRD 355

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V  D MG ++      A+  G    +IVG   + + KV +K+  TG +  + L+++
Sbjct: 356 AGKAVELDLMGRKLNKALNYANTKGIKKVLIVGENDILEGKVALKNMETGEQSLIELKDI 415

Query: 435 I 435
           +
Sbjct: 416 L 416


>gi|312136460|ref|YP_004003797.1| glycyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
 gi|311224179|gb|ADP77035.1| glycyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
          Length = 591

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 81/276 (29%), Gaps = 11/276 (3%)

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
              Y              G   +   A+          E      +GE      +     
Sbjct: 306 MAHYAADCWDAEVYMGEFGWIEVVGIADRTNYDLKSHME-----SSGEDLRIFVEYEKPK 360

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +                 E+         ++  EK+   L +N+      I+      +
Sbjct: 361 LVKKVEIHPRMDKIGPRFKEKAKKILKKLKNMEPEKIKKELSKNEGKIKIKIDNEEFEIY 420

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH---DGKGIIWPDSVAPF 347
             +  +     +    GK     +     G  R+  A +  +    D +      +    
Sbjct: 421 EDEIEIKEKRKYI--KGKKVLPHVIEPSFGIDRIFYATMIHNFVEDDERTYFDFPTDIAP 478

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
               +    + +   +   KI   L K G  V +D+ G  IG ++A AD +G P  + V 
Sbjct: 479 IPVAVFPLLNKKELINLAIKIKKDLQKEGLIVNYDESG-TIGRRYARADEIGIPFAITVD 537

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + + D  V I++R    +  +++ ++ +       
Sbjct: 538 HQSIEDGTVTIRNRSDKKQVRIAINKIPDTIKKLIK 573



 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYD 87
           +  I++   G Y + PLG      +    RE    + G  E+  P +   ++   SG  D
Sbjct: 26  SFEIYEGLSGFYDYGPLGVLLKRKIIEKWREYYTIKEGFYEVETPNVMPKEVLKASGHVD 85

Query: 88  SYGKEMLRLADRND 101
            +   M +  D ++
Sbjct: 86  HFNDPMTKCKDCSE 99


>gi|66809557|ref|XP_638501.1| glycyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|60467108|gb|EAL65146.1| glycyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 678

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 81/301 (26%), Gaps = 28/301 (9%)

Query: 152 SREFLMKD-AYSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMRAESGPIGGDLSHE 209
              F             +         +     +         + + A           E
Sbjct: 373 GLRFRQHQKNEMAHYAQDCWDAEILSSYGWVECVGHADRSCYDLKVHATESKSNLSAYEE 432

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F       E Q       +  P          +  +   + +     A   ++      D
Sbjct: 433 F------KEPQFVDIAKVVVNPGAISKKHRAAVSPIKKYLTELKDDLAKALEIQETITKD 486

Query: 270 ---SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
              +L  +        ++  I     K            +G   +  +     G  R++ 
Sbjct: 487 GSYNLVLDGNTYDITADMVTISKAQEK-----------KNGHTFFPHVIEPSFGLGRIIY 535

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAH------DQVCRDACEKIYARLSKVGCDVF 380
           +++E ++  +       V      +  +KA               + I   L +      
Sbjct: 536 SILEQNYYTRENDEQRGVLSLPAIIAPVKASILPLTSSDRIAPFVQTISKALKEANISTK 595

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            DD G  IG ++A  D +G P  V +  + V D+ V ++ R T  +  + + E+ +    
Sbjct: 596 VDDTGNAIGRKYARTDEIGVPFGVTIDFQTVEDNTVTLRERDTTKQVRIPISELASTLRK 655

Query: 441 R 441
            
Sbjct: 656 L 656



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 25  LMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           LM R   I Q         G+Y + P G     N+  + R+         E+   ++   
Sbjct: 73  LMKRRFFITQSFSIYGGQAGLYDYGPPGCAVKANLINLWRQHFVLNEDMSEVDCVSVTPE 132

Query: 78  DLWVESGRYDSYGKEMLRLA 97
            +   SG    +   M++  
Sbjct: 133 QVLKASGHVAKFADFMVKDE 152


>gi|294660421|ref|NP_853173.2| glycyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|298286863|sp|Q7NB88|SYG_MYCGA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|284812080|gb|AAP56741.2| glycyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|284930655|gb|ADC30594.1| glycyl-tRNA synthetase [Mycoplasma gallisepticum str. R(high)]
          Length = 463

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 48/451 (10%), Positives = 119/451 (26%), Gaps = 43/451 (9%)

Query: 30  GMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWV 81
           G ++Q S    G+   + + PLG    +N+  ++ +    ++     +    + +  +W 
Sbjct: 16  GFVYQSSEIYNGLANSWDYGPLGALLKNNIKQLLLKHFVFSQPDMKLLDSSIILNPLVWQ 75

Query: 82  ESGRYDSYGKEMLRLA------------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            SG  D++   ++               +  +   I    + +          K      
Sbjct: 76  ASGHLDNFSDPLVDCKKCKSRYRADKLIEELNDDSIKITENTDPSYLEQILVDKKVECKK 135

Query: 130 FTFYQIQLKFRDELRPRFG---------VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
                     +  L  +            +  R    +  +        ++       V+
Sbjct: 136 CESTNWTKIRKFNLMFKTFQGVVEDSLNTIYLRPETAQGIFINFKNIVRTQRMKLPFGVA 195

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            +    R  +        +          F+      E   +      DF I     +  
Sbjct: 196 QIGKAFRNEITPGNFIFRTREFEQFEIEYFLEPELVKEKFDWYINQIEDFLINKLLINKQ 255

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            I       ++     + T D           E   ++ RG          +  +L    
Sbjct: 256 LIKRHEIAKDELAHYSSRTIDFQF-NFPHGWSELWGLAHRGNFDLTAHSNESGKTLDYHN 314

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH------DGKGIIWPDSVAPFKISLINI 354
             +          +    +G  R++ A+  + +      D                 + I
Sbjct: 315 EIE---KTKIIPDVIEPSLGIERILYAIFCAHYHVEQLADNDSREVLRLPVSLSPYQLAI 371

Query: 355 KAHDQVCRDACEKIYARL---SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                  +D   ++Y  L   S       +D     IG ++   D +G    +      +
Sbjct: 372 LPLVNKLKDQAYQLYLDLLKISDANLRFDFD-SAGSIGKRYRRYDAIGAKYCLTYDFDSL 430

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               V I+ R +  +  + + E+  +  +  
Sbjct: 431 EKGIVTIRERDSMEQIKIPISELRQWIRNNL 461


>gi|114562295|ref|YP_749808.1| histidyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
 gi|122300420|sp|Q085U5|SYH_SHEFN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|114333588|gb|ABI70970.1| histidyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
          Length = 424

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 61/421 (14%), Positives = 126/421 (29%), Gaps = 22/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        V A++R   +  G  E+  P ++S DL+  S G   D   KEM  
Sbjct: 10  GMNDILPTQSPLWQKVEAVLRSSVSAFGYSEIRTPIVESTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y +   FR E   +    +  +F
Sbjct: 70  FEDRNSDSLTLRPEGTASTVRAGNEHGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQF 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            ++         +      +                 + LG  +         I     H
Sbjct: 129 GVEVYGIGSADIDAEVLMLSARLWDLLGIKEHVALELNTLGDPAERAAYRDALIAFLEQH 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKL 267
           +  +  D+           +D   P       D  +L   + E     ++   ++ +   
Sbjct: 189 KDKLDEDSQRRMYSNPLRVLDSKDPQVQAILGDAPALMDYLGEDSKTHFSTLCELLDAVG 248

Query: 268 FDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                  + V         +F       G++ ++     + G  G+       + G    
Sbjct: 249 IQYTINPRLVRGLDYYNRTVFEWVTTSLGSQGTVLAGGRYDGLVGQLGGKDTPAVGFAMG 308

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++  + +    I P+          N            +++  +L  +       
Sbjct: 309 LERIVLLLETLELTSDIAPEVDVYVTAMGENCVV---EAIKVAQELRQQLPTLKVMSHC- 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHR 441
             G     Q   AD  G    +I+G   +++++V IK  R    ++ ++  E++   +  
Sbjct: 365 -GGGNFKKQMKRADKSGAQFALIIGENEIANNQVAIKPLRTNNEQQLVTRSELVAKIAEL 423

Query: 442 F 442
            
Sbjct: 424 I 424


>gi|47459127|ref|YP_015989.1| glycyl-tRNA synthetase [Mycoplasma mobile 163K]
 gi|47458456|gb|AAT27778.1| glycyl-tRNA synthetase [Mycoplasma mobile 163K]
          Length = 458

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 57/440 (12%), Positives = 144/440 (32%), Gaps = 53/440 (12%)

Query: 40  YSWLPLGQKALDNVNA-----IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG   L+N+        I  E+N      +    L + ++W  SG   ++   ++
Sbjct: 34  WDYGPLGSLLLNNIKNEWIKYFIHNEENNF---LIDAKILMNPEVWKTSGHVGNFSDPLI 90

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
                N+K        EE    + +    S   +    +  +   + E          R+
Sbjct: 91  ENK-INNKRYRADHLIEE-FDPLMKIETLSEIEMEN--FIKRNITKYEGVATDW-TSIRK 145

Query: 155 FLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFH--------------RLGLK 191
           F +       +  +     Y +          F + LR                 R  + 
Sbjct: 146 FNLMFETYQGILEDSKNKIYLRPETAQAIFVNFKNILRTTRTKIPFGVGQIGKSFRNEVT 205

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                  +          F+   D+ +   +  K   +F I        D++ +    ++
Sbjct: 206 PGNFIFRTREFEQMELEYFVHPNDSDKAFEYYLKKCYEFLI--FLGIKKDLLKIRKHAKE 263

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
             + Y++ +     K      E   V+ RG          +K +    + F   +   + 
Sbjct: 264 ELSHYSSATSDIEFKFDFGWGELLGVANRGDFDLSSH---SKATNEELSYFDSIENITYI 320

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIW--------PDSVAPFKISLINIKAHDQVCRD 363
             +    +G  R+  A++ SS++ + +             + P++I+++ +        +
Sbjct: 321 PHVIEPSMGLDRLALAILTSSYEEETLEVDSRVVLKLNKFLVPYQIAVLPLVKK---FSE 377

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +++   L +      +D+    IG ++   D +G    +    +   +    I++R T
Sbjct: 378 ESKELVKWLKQHNFRTTYDES-ASIGKRYRRQDAIGTFFALTYDYQSAENQSFTIRNRDT 436

Query: 424 GIREDMSLEEVINYASHRFS 443
             +  ++  ++I+Y +   +
Sbjct: 437 MEQIRINKIDLISYLTKELN 456


>gi|260435174|ref|ZP_05789144.1| histidyl-tRNA synthetase [Synechococcus sp. WH 8109]
 gi|260413048|gb|EEX06344.1| histidyl-tRNA synthetase [Synechococcus sp. WH 8109]
          Length = 430

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 121/427 (28%), Gaps = 34/427 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKE 92
           G+   LP   +    V A+ RE  + +G  E+  P L++ DL+       +   D  GKE
Sbjct: 9   GMVDLLPEALQRWQAVEAMAREHFHLSGFGEIRTPLLETTDLFCRGIGEAT---DVVGKE 65

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    DR D++    P     +      H    +     +Y     FR E        R 
Sbjct: 66  MYSFQDRGDRSCTLRPEGTASVVRAALQHGLLSQGAQKLWYA-GPMFRYERPQAG---RQ 121

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           R+F              S      +    L      GL+       +        +  + 
Sbjct: 122 RQFHQIGVEWLGAERARSDVEVIALAWDLLASLGVGGLQLELNSLGTAEDRQAYRNALVA 181

Query: 213 LAD---------------TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             +               T   ++  SK+     +  E     D +   S          
Sbjct: 182 WLEQRSEALDPDSQTRLSTNPLRILDSKNKATQALLEEAPTLADALCEASRERFADVQRG 241

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            T+     +L   L       +           G + ++     + G  G+       + 
Sbjct: 242 LTALGIPFRLNPRLVRGLDYYSHTAFEITSDQLGAQATVCGGGRYDGLIGQLGGSPTPAI 301

Query: 318 GI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           G   G  R++  +  ++      +     A     +  +   D   R     +   L   
Sbjct: 302 GWALGMERLLLVLEAAAQADAQGVAARLTAAAAPDVYLVNRGDAAERS-ALALARDLRAS 360

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM----SL 431
           G  V  D  G   G QF  AD  G P  +++G       +V +K       E       +
Sbjct: 361 GLRVELDASGSAFGKQFKRADRSGAPWALVIGEDEAERGEVRLKALNQQAEESTVALAPV 420

Query: 432 EEVINYA 438
             ++   
Sbjct: 421 SAIVERL 427


>gi|226356735|ref|YP_002786475.1| glycyl-tRNA synthetase [Deinococcus deserti VCD115]
 gi|226318725|gb|ACO46721.1| putative glycine--tRNA ligase (Glycyl-tRNA synthetase) [Deinococcus
           deserti VCD115]
          Length = 504

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 71/491 (14%), Positives = 146/491 (29%), Gaps = 76/491 (15%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G I Q S      +G Y + PLG +  +N+ A         R     +    +    +
Sbjct: 15  RRGFIFQGSEIYGGLQGFYDYGPLGVELKNNIKAAWWRSNVYERDDMEGLDASIIMHRLV 74

Query: 80  WVESGRYDSYGKEM---LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT----- 131
              SG   ++   M    +   R     +      +V+  +     +S  N P       
Sbjct: 75  LRHSGHEATFSDPMVDNKKNNKRYRLDHLVKDQKADVLARVAELMGQSADNFPALVAALN 134

Query: 132 -----------------FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
                             +  ++    E +P   + ++    + D  S+      +    
Sbjct: 135 ANPAQASTALREAGVRDPFSGEIGEWTEPKPFNMMFKTTIGPVADEDSYGYLRPETAQGI 194

Query: 175 NKMFVSYLRIFHR--LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC----SKDFM 228
              F + +    R      +   +A    I        +   +  E + FC     + + 
Sbjct: 195 FTNFKNVVDSTSRRLPFGIAQIGKAFRNEITPRNFIFRVRELEQMEIEFFCVPGTDEQWH 254

Query: 229 DFPIPSENTDFD-------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR- 280
           +  +    + ++        I  L+   E        T D+  +       E + ++ R 
Sbjct: 255 EHWLEKRLSWWEAQGVPRSKIEILDVPAEDLAHYSKRTYDLMYDYPTLGHEEIEGIANRS 314

Query: 281 ----------GIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVI 329
                       E+G +             T       K     +     G  R + AV+
Sbjct: 315 DYDLGSHTKAQGELGLVAKVEENNDSVAKLTIPHPETNKPVVPFVIEPSAGVDRAMLAVL 374

Query: 330 ESSH---------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DV 379
             +          +   +     +AP K+++I +  + +      + I A L  +G   V
Sbjct: 375 SEAFTKETLENGSERIVLKLKPHLAPIKVAVIPLARNREEITSVAKAIKAELQGLGLGRV 434

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS-------KVEIKHRLTGIREDMSLE 432
            ++D G  IG  +   D +G P  V V    V           V ++ R T  +E + + 
Sbjct: 435 LYEDSG-NIGKAYRRHDEVGTPYCVTVDFDTVGKGEDPALTDTVTVRDRDTLAQERVKIS 493

Query: 433 EVINYASHRFS 443
           E+  +   +  
Sbjct: 494 ELSAWIQAKLR 504


>gi|256028560|ref|ZP_05442394.1| histidyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289766480|ref|ZP_06525858.1| histidyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289718035|gb|EFD82047.1| histidyl-tRNA synthetase [Fusobacterium sp. D11]
          Length = 413

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 57/397 (14%), Positives = 113/397 (28%), Gaps = 17/397 (4%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + ++     G   +  P  +  +L+        D   KEM    DR D+++   P +
Sbjct: 24  ISNVAQKMFENYGYNFVKTPIFEETELFKRGIGEATDVVEKEMYTFKDRGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEG 169
              +   +  +    +     FY     FR E        R REF       F + +P+ 
Sbjct: 84  TASLVRCYLENAIYAKEEISRFYYNGSMFRYERPQAG---RQREFNQIGLEVFGEKSPKV 140

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                   +    ++        I       S  I  +   E        +    C    
Sbjct: 141 DAEVIAIGYKFLEKLGITDLEVKINSVGSKESRTIYREKLIE-HFSKHLDDMCDDCKDRI 199

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
              P+   +   D                      H E +   L        +  E   +
Sbjct: 200 NRNPLRLLDCKVDKDKDFYKSAPNIIDFLFEDERKHYEDVKKYL---DVFGIKYTEDSTL 256

Query: 288 FYFGTKYSLPMSATFKGADGKDHY-----VQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
                 YS  +        G                    + + AV  ++   + ++   
Sbjct: 257 VRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAVGFATGVERIMMLLG 316

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
              P     + I    +   +   KI   L      V+ D   + + S    AD L    
Sbjct: 317 ENYPKNNPDVYIAWLGENTSETALKIAESLRDNDIKVYIDYSEKGMKSHMKKADKLSVRY 376

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +I+G   ++   V +K   T  ++++ +EE++N   
Sbjct: 377 CIILGEDELNKGIVLLKDFSTREQKEVKIEEIVNQIK 413


>gi|148979608|ref|ZP_01815613.1| histidyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
 gi|145961693|gb|EDK26990.1| histidyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
          Length = 422

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 62/415 (14%), Positives = 123/415 (29%), Gaps = 22/415 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKEMLRLA 97
           LP        V + ++   +  G  E+ +P ++  +L+      E+   D   KEM    
Sbjct: 15  LPTQSPLWQKVESAVKNVVSAHGYNEVRMPIVEETNLFSRAVGEET---DVVSKEMYTFD 71

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSR 153
           DRN  ++   P            +    R+    +Y +   FR E       R       
Sbjct: 72  DRNGDSLTLRPEGTAGCVRSCIQNSLINRDEQRLWY-MGPMFRHERPQKGRYRQFHQCGV 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           E    D    D           +            + +G         +  +     H  
Sbjct: 131 EVFGLDGPDVDAELIMMTARLWRELGIDKHVRLELNSIGSTEDRANYRTALVAFLEQHID 190

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFD 269
           ++  D            +D   P       D   L   + E+    +A   ++ +    +
Sbjct: 191 VLDEDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSEYLGEESKQHFAGLCELLDAVGIE 250

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                + V         +F +    +  + A      G  +   +   G  A   V   +
Sbjct: 251 YQVNERLVRGLDYYNRTVFEW---ITESLGAQGTVCGGGRYDGLVEQLGGKATPAVGFAM 307

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK--VGCDVFWDDMGEQ 387
                   +   +     +   + + A  +    A  ++  +L     G  V     G  
Sbjct: 308 GLERLVLMMETLELTEVRRSVDVYMVAAGEGTMIAGMQLANQLRDTVEGVRVMSHFGGGS 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              QF  AD +G  + +++G   V+D+ V +K  + G +E +S  EV    +   
Sbjct: 368 FKKQFKRADKVGAVVALVLGENEVADNTVVLKDLVGGEQETVSQTEVAAKVAALI 422


>gi|291531007|emb|CBK96592.1| histidyl-tRNA synthetase [Eubacterium siraeum 70/3]
          Length = 426

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/407 (14%), Positives = 110/407 (27%), Gaps = 20/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I R      G  E+  PT +  +L+     G  D   KEM    D+  +++   
Sbjct: 22  WHTVEKIARNVAEAYGCKEIRTPTFEHTELFQRGVGGTTDVVQKEMYTFNDKKGRSITLK 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL-T 166
           P            +      LP   Y     FR E        R REF       F   +
Sbjct: 82  PEGTAGAVRAVIENGLLNDVLPLKTYYFTRCFRYEAPQSG---RLREFNQVGIEYFGTAS 138

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P                +  +     I       P      H+ +    +      C   
Sbjct: 139 PAADAEVIALANDIIKSLGVKNISLEINSIGC--PKCRAEYHKALKEYYSQYKDQLCGTC 196

Query: 227 FMDFPIPSENTDFDD------IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--- 277
                                      ++  +          + +K  D L  +  V   
Sbjct: 197 LERLDRNPMRLLDCKSEICSSFKKDAPMILDYLCDDCREHFENVKKRLDVLGVSYTVNPL 256

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RG++      F    +   S     A G+ + +     G     +  A+         
Sbjct: 257 IVRGLDYYTNTVFEFISNEIGSQGAVCAGGRYNGLVEEIGGNSVPGLGFAMGLERIIMVM 316

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                   P K   + I + D        ++  +L + G     D  G    +Q   A+ 
Sbjct: 317 ENQKLEFEPEKKCDLYIASFDDETSIYAMELVQKLREEGFWAECDISGRSFKAQMKYANK 376

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G    +++G   ++    ++K    G    ++L++     S + + 
Sbjct: 377 IGATYCMVIGGDEMNTKSAKLKRMSDGTETPVTLDD---KFSEKLNT 420


>gi|27981827|gb|AAM94642.1| prolyl tRNA synthetase [Spironucleus barkhanus]
          Length = 299

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 79/194 (40%), Gaps = 11/194 (5%)

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
           W     A    H E L   +P  K      ++   I + G K++   +  F   +    +
Sbjct: 24  WDKFAGAE---HTEVLDVVMPCGKV-----LQTAGIHFLGQKFAKVFNIKFIDQNNTQQF 75

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
            +M   GI + R +A  +    D KG++ P  +A +++ L+    +        ++I   
Sbjct: 76  AEMTCAGI-STRALACALSVHGDQKGLMLPSLIAMYQVVLVPCGKYGDDLVLKMKEIQQT 134

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI--REDM 429
           L   G   F+DD  + +G +    ++ G PL++ +G + +         R TG   ++  
Sbjct: 135 LKAAGIRSFFDDSKKSMGEKIFHWEMKGVPLRIELGPRDLESGDFVAICRDTGKDGKQVF 194

Query: 430 SLEEVINYASHRFS 443
            ++++   A  + +
Sbjct: 195 KVQDIAAVARDQLA 208


>gi|261252179|ref|ZP_05944752.1| histidyl-tRNA synthetase [Vibrio orientalis CIP 102891]
 gi|260935570|gb|EEX91559.1| histidyl-tRNA synthetase [Vibrio orientalis CIP 102891]
          Length = 422

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 16/412 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        +   ++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKLENTVKNVVSAYGYNEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFL 156
             ++   P            +    R+    +Y +   FR E       R       E  
Sbjct: 75  GDSLTLRPEGTAGCVRSCIENSLINRDEQRLWY-MGPMFRHERPQKGRYRQFHQCGVEVF 133

Query: 157 MKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             D    D           +            + +G         +  I     H  I+ 
Sbjct: 134 GLDGPDVDAELIMMTARLWRELGIDKHVRLELNSIGSLEDRANYRTALIAFLEQHIDILD 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLP 272
            D            +D   P       D   L+  + E+    +A   ++ +    +   
Sbjct: 194 DDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSDYLGEESKEHFAGLCELLDAAGIEYTV 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             + V         +F +    +  + A      G  +   +   G  A   V   +   
Sbjct: 254 NERLVRGLDYYNRTVFEW---ITESLGAQGTVCGGGRYDGLVEQLGGKATPAVGFAMGLE 310

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGS 390
                +   +     +   + +    +    A  K+   L +   G  V     G     
Sbjct: 311 RLVLMLETLELTEVRRSVDVYMVTAGEGTMMAGMKLAESLREQVSGLRVMNHFGGGNFKK 370

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           QF  AD +G  + +++G   V+D+ V +K  + G +E  S  +VI   S   
Sbjct: 371 QFKRADKVGAAVALVLGENEVADNTVVLKDLIGGTQETYSQTDVIAKLSELV 422


>gi|239616783|ref|YP_002940105.1| histidyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
 gi|239505614|gb|ACR79101.1| histidyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
          Length = 419

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/407 (13%), Positives = 111/407 (27%), Gaps = 19/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   IR+        E+  P  +  +L+  S     D   KEM    D+  +++   
Sbjct: 19  WHYIENTIRKITKLYAFEEIRTPIFEHTELFKRSVGESTDVVQKEMYTFNDKGGRSLTLR 78

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLT 166
           P     +   +  +    R  P   + +   FR E        R R+F            
Sbjct: 79  PEGTASVARAYVENGFINRGSPLKLFYVGPMFRYEKPQAG---RLRQFHQFGIEILGSHD 135

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                            +        I     +        +E +    + +    C   
Sbjct: 136 STADYEVIELGINFLKELGISGTKLYINSVGCNK--CRPKYNEVLKDYYSDKLSTLCDDC 193

Query: 227 FMDFPIPSENTDFDDI-ISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSA 279
              +           I   +                +H E+L   L       E      
Sbjct: 194 KRRYNTNVLRLLDCKIDKEVAEGAPSIHNYLCDDCKIHFEQLQYYLKSRNLDYEVDHKLV 253

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG++      F  + ++  +     A G+   +     G     V  A            
Sbjct: 254 RGLDYYTKTAFEIRSNMLGAQDQVLAGGRYDGLVEYIGGKSVPAVGFAAGMERMILLLKK 313

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD--DMGEQIGSQFAVADL 397
                   +++ + I   ++       +   RL K G   F D  +   +  ++F  A  
Sbjct: 314 MGIEPKVEELNTVAILPMNKEAFVKAFEFAERLRKKGISTFVDVMERNLR--NKFKHASR 371

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G  + V++G + +    V IK    G +  +  + + +Y   +   
Sbjct: 372 IGAKIAVVIGEEELEKGFVTIKVMEEGSQYTVDSDWMADYIFKKLKE 418


>gi|16331375|ref|NP_442103.1| histidyl-tRNA synthetase [Synechocystis sp. PCC 6803]
 gi|2501002|sp|Q55653|SYH_SYNY3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|1001546|dbj|BAA10173.1| histidyl-tRNA synthetase [Synechocystis sp. PCC 6803]
          Length = 447

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/423 (15%), Positives = 116/423 (27%), Gaps = 28/423 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V AI +   +R    E+  P  +   L+        D  GKEM    DR 
Sbjct: 14  LPPETNYWQWVEAIAKSILDRALYQEIRTPIFEQTSLFERGIGEATDVVGKEMYSFTDRG 73

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+ +   P     +   +              +     FR E        R R+F     
Sbjct: 74  DRPITLRPEGTAGVVRAYIEQNLQAAGGVQRLWYTGPMFRYERPQAG---RQRQFHQLGV 130

Query: 161 YSF-DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD---- 215
                  P                    LGL ++ +   S   GGD       L      
Sbjct: 131 EVLGSADPRADVEVIALGTDILKA----LGLSNLSLALNSVGNGGDRQRYREALIAYLTP 186

Query: 216 -TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              E            P+   ++       +              S  H +++   L   
Sbjct: 187 FKAELDPDSQDRLERNPLRILDSKAKRTQEIVQDAPSILDHLGVDSQRHFDQVQQLLTNL 246

Query: 275 KRVSA------RGIEVGHIFYFGTKYSL-PMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                      RG++      F  + S     AT     G   Y  + +   G +     
Sbjct: 247 GIAYQLTPTLVRGLDYYTHTAFEIQSSDLGAQATV---CGGGRYDGLVAELGGPVTPAVG 303

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                     ++   +  P     + + +  +        +  +L   G  V  D     
Sbjct: 304 WAMGLERLIILLQQMATPPAPSPDLYLISKGEKAEPQALILAQKLRNQGLAVALDLSASA 363

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---INYASHRFSN 444
            G QF  AD  G    +++G   ++   V++K      +E + L+++   I     R + 
Sbjct: 364 FGKQFKRADKSGAIACLVLGDGEIATGTVQLKWLADKAQETLQLQDLMGNITELKQRLAG 423

Query: 445 NRP 447
           +R 
Sbjct: 424 HRE 426


>gi|281208581|gb|EFA82757.1| glycyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 643

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 65/424 (15%), Positives = 128/424 (30%), Gaps = 86/424 (20%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R    +   LPF   QI   FR+E+ PR G++R REF M +   F
Sbjct: 208 YLRPETAQGIFVNFRRLLDFNGSRLPFAAAQIGNSFRNEIAPRSGLLRVREFTMAEIEHF 267

Query: 164 DLTPEGSKHSYN------------------------------------KMFVSYLRIFHR 187
                 +   +                                        ++Y     +
Sbjct: 268 VHPDRKAHPKFCDVATLKTNLLTAEAQGTTKMVVEMNFGEAVAKGIINNETLAYFMARTQ 327

Query: 188 LGLKSIPMRAESGPIGGDLSHEF-IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           L L ++ ++ E        S+E     AD  + ++  S  +++    ++ + +D    L 
Sbjct: 328 LFLHTVGIKPERMRFRQHQSNEMAHYAADCWDAEIHTSYGWVECVGHADRSCYD----LK 383

Query: 247 SIVEQWTAPYAATSDVHN-EKLFDSLPENKRVSARG--------------------IEVG 285
              E+   P     +  +  K+ D++         G                     E G
Sbjct: 384 VHSEKSQVPLVVFEEFKDGPKMVDTIDVKMNKGLMGKTFKATAKEPMDFLDSLSNDFEAG 443

Query: 286 HIFYFGTKYSLPMSATFKGAD------------------GKDHYVQMGSYGIGAMRVVAA 327
             F                                    G+ +   +     G  R++ +
Sbjct: 444 LTFKERLDTDGQAVINVNTNQYTITKEMVTLTKTQKKISGESYQPHVIEPSFGLGRIIYS 503

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKA------HDQVCRDACEKIYARLSKVGCDVFW 381
           +IE ++  +       V      +  +KA       +        +I   L + G     
Sbjct: 504 LIEHAYWVREGDEQRCVLSLPAIIAPVKASILPLIGNAELAPFVHRINRLLKEAGISCKV 563

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           DD G  IG ++A  D +G P  + +    + D  V ++ R T  +  + + +V       
Sbjct: 564 DDSGSAIGRRYARTDEIGIPFGITIDFDTLKDDTVTLRERDTTKQVRIPISDVTQTLKQL 623

Query: 442 FSNN 445
             NN
Sbjct: 624 CENN 627



 Score = 56.7 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 10/119 (8%)

Query: 2   RRSKYFLPILQENPRDAEIASHKLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNA 55
           + S    P  +E    A +    LM R   I           G+Y + P G     N+  
Sbjct: 19  KMSISTTPTTKEPNVRAGVED--LMKRRFFITPAFQIYGGVAGLYDYGPPGCAIKANLIN 76

Query: 56  IIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
             R+        +E+    L    +   SG    +   M++  +            E  
Sbjct: 77  FWRQHFALNEDMLEVDCTALTPEIVLKTSGHVAKFADFMVKD-EVTGMCYRADHILEAH 134


>gi|218883366|ref|YP_002427748.1| glycyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
 gi|218764982|gb|ACL10381.1| Glycyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
          Length = 583

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 76/266 (28%), Gaps = 35/266 (13%)

Query: 207 SHEFIVLADTGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAP---------Y 256
                    T + +V+  K    +    +  T +D    +       T            
Sbjct: 306 HERAHYSQQTFDQEVYTEKYGWIEIAGYAYRTTYDLSRHIQYSKADLTFFKHYEKPVERI 365

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG------------ 304
              +     K+ D            +          + +       +G            
Sbjct: 366 IPKAYPDPGKIKDLYGGEMGRIMERLAQKTPEEIYRELAEKGYVEIEGLKMPSEAFIVKQ 425

Query: 305 ----ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK--------GIIWPDSVAPFKISLI 352
                 G+     +     G  R++  V+E S+  +         +            + 
Sbjct: 426 EREKIHGEKIIPHVVEPSFGVERLLYIVLEYSYTVRDGKTVLKLPVHLAPYHVAVFPLVT 485

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
             K       +    IY RL   G  V +DD    IG ++A  D +G P  V V  + + 
Sbjct: 486 GKKQEHARIIEIARNIYRRLITRGFRVIYDD-DGSIGRRYARVDEIGIPYAVTVDYQTLE 544

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYA 438
           D  V ++ R + ++E + ++E+  Y 
Sbjct: 545 DGTVTVRDRDSSLQERVKIDELEKYL 570



 Score = 45.5 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRTG--AIEMSVPTLQSADLWVESGRYDSYGK 91
           G Y + P+G     N+  +  +    +    +E+  P +    ++  SG  +S+  
Sbjct: 32 AGFYDFGPVGVLLKRNLINLWLKTFVYSNDLVVEIETPVINPRIVFKASGHEESFMD 88


>gi|317055191|ref|YP_004103658.1| histidyl-tRNA synthetase [Ruminococcus albus 7]
 gi|315447460|gb|ADU21024.1| histidyl-tRNA synthetase [Ruminococcus albus 7]
          Length = 440

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/437 (15%), Positives = 127/437 (29%), Gaps = 43/437 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MI +  KG    LP        +  +  E   + G  E+ VP  +   L++ S     D 
Sbjct: 3   MIQRP-KGTADMLPSQAYKWHTIEKLASETAEQYGFREIRVPAFEETGLFLRSVGETTDV 61

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM  +    D      P     +      +       P   + +   FR E   +  
Sbjct: 62  VQKEMYTVTATGDSEFTLRPEGTAGVMRAMIENGLLNEAFPQKVFYLINCFRHENVQKG- 120

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R REF              +                R+GL+ I +   S       + 
Sbjct: 121 --RLREFHQFGCEMVGSADAKADADV---ISMAKSFMDRIGLRDIELNINSIGCPTCRAK 175

Query: 209 EFIVLADT-----GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
               L +       E    C +     P+   +        +               + H
Sbjct: 176 YQQALREYFGARREELCDTCKERLEKNPMRLLDCKSPICKEIGKNAPLIIDYLCEDCNDH 235

Query: 264 NEKLFDSLP-------------ENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGK 308
            EKL   L                     R +        G + ++     + G   +  
Sbjct: 236 FEKLKKYLGLMGIDFVVNPRIVRGLDYYTRTVFEFISKDIGAQGTVCGGGRYDGLIEELS 295

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              V    + +G  R++  +   + D             K   + I +      D   ++
Sbjct: 296 GKAVPALGFAMGIERLILTMEAQNCDFMEA---------KTCDLYIASMGDDAADKAMEL 346

Query: 369 YARLSKVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
             +L   G  V +D    G +   ++  A  +G    +++GS  +     ++K+  +G +
Sbjct: 347 AMKLRDEGYFVEYDLMGRGIKPQMKY--AGKIGAKFVLVIGSSELETGCAKLKNMASGEQ 404

Query: 427 EDMSLEE-VINYASHRF 442
            D+ L++  I+  S+  
Sbjct: 405 ADIKLDDSFIDDFSNAL 421


>gi|329766758|ref|ZP_08258301.1| glycyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137013|gb|EGG41306.1| glycyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 485

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 70/457 (15%), Positives = 144/457 (31%), Gaps = 55/457 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G + + P G    +    + R E  R  G +E+    + S  ++  SG   ++   +++
Sbjct: 28  AGFWEYGPSGVSLKNKFLELWRRELIRRDGMMEIDGSQIMSKSVFEASGHLGNFADPIIK 87

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN---LPFTFYQIQLKFRDELRPRFGVMRS 152
                          E    +I  S   S  +   L       + K   E   +F +M  
Sbjct: 88  CTKCKSTFRADRTIAEISKVEIPESADLSEFDNAILQNNIKCPKCKGDFESTKKFNMMFK 147

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
                ++  ++           +   +            +   ++    I    S   + 
Sbjct: 148 VGIGPEEEEAYLRPETCQSIFVDFPRLYKTMRGKLPLGIAQVGKSFRNEISPRQSLLRLR 207

Query: 213 LADTGETQVFCSKDFMDF--------------PIPSENTDFDDIISLNSIV--EQWTAPY 256
                E +VFC+ + +D                  +E        ++ S V   ++ A Y
Sbjct: 208 EFYQAEIEVFCNPNKLDEIEKFREIENAIIRIQTDAEIIPMTCKKAVESGVVPNKFVAYY 267

Query: 257 AATSDVHNEKL--------FDSLPENKRVSA------------RGIEVGHIFYFGTKYSL 296
            A      EK         F  L E ++                G        + + Y L
Sbjct: 268 LAILTEFYEKTGIDITKSRFRKLGEKEKAFYAQVAFDFEVETTIGWLELVACNYRSDYDL 327

Query: 297 PMSATFKGADGKDHY------VQMGSYGIGAMRVVAAVIES------SHDGKGIIWPDSV 344
              A       +           +    +G  R +  ++E        H+   +     +
Sbjct: 328 SSHANKSKEKFEVMDNEEKVLPHVFEISMGIDRSLYTILEHSLIDDKEHERVVLSIKPYL 387

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP  + ++++   D   ++  ++IY  L +   DVF D  G  IG ++   D +G P  V
Sbjct: 388 APVHVGVLSLIKKD-GLKEKTDEIYLSLKRK-YDVFLDHSGA-IGRRYRRLDEIGAPFAV 444

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            V  +   D  V I+ R +  +E + ++++ +  S  
Sbjct: 445 TVDYQSFEDQTVTIRKRDSMSQERIKIDDIDSVISKE 481


>gi|229525406|ref|ZP_04414811.1| histidyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229338987|gb|EEO04004.1| histidyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
          Length = 422

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/411 (14%), Positives = 119/411 (28%), Gaps = 16/411 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V  +++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEKEMHTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFL 156
             ++   P            +   Y      +Y +   FR E       R       E  
Sbjct: 75  GDSLTLRPEGTAGCVRSGIENGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQCGVEVF 133

Query: 157 MKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             D    D           +            + +G         +  I     ++ ++ 
Sbjct: 134 GLDGPDVDAELIMMTARLWRELGIAQHVRLELNSIGSLEARANYRTALIDYLEQYQNVLD 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSLP 272
            D            +D   P       D   L+  ++  +   +A   ++ +    +   
Sbjct: 194 EDCKRRMYTNPLRVLDSKNPDVQAILGDAPQLSDYLDAESKQHFAGLCELLDAAGIEYTV 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             + V         +F      SL    T  G  G  +   +   G      V   +   
Sbjct: 254 NQRLVRGLDYYNRTVFE-WITESLGSQGTVCG--GGRYDGLVEQLGGKPTPAVGFAMGLE 310

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGS 390
                +    +    +   + +    +    A  K+  +L +   G  V     G     
Sbjct: 311 RLVLMMETLGNTDVRRSVDVYMVTAGEGTMMAGMKLAEQLREQVPGLRVMTHFGGGNFKK 370

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           QF  AD +G  + +++G   V+   V +K    G +  ++  EV    +H 
Sbjct: 371 QFKRADKVGAAIALVLGEDEVAAQTVVVKDLAGGEQNTVAQAEVAKLLAHL 421


>gi|88858479|ref|ZP_01133121.1| histidine tRNA synthetase [Pseudoalteromonas tunicata D2]
 gi|88820096|gb|EAR29909.1| histidine tRNA synthetase [Pseudoalteromonas tunicata D2]
          Length = 424

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 67/421 (15%), Positives = 126/421 (29%), Gaps = 32/421 (7%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP   +    V  I+R+     G  E+  P ++S DL+  S G   D   KEM    DRN
Sbjct: 15  LPGDTQVWQKVETILRDTVASFGYQEIRFPIVESTDLFKRSIGEVTDIVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P    V       +   Y      +Y +   FR E   +    R R+F     
Sbjct: 75  GDSLTLRPEGTAVCVRAGNENGLLYNQEQRLWY-MGPMFRHERPQKG---RYRQFHQFGL 130

Query: 161 YSFDLTPEGSKHSYNKMF----------VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            SF +           +                  + LG         +  +     H  
Sbjct: 131 ESFGVATADMDAEVILLTARLWQAFGVSKYVRLELNSLGSNQAREEYRNALVAYLEQHIE 190

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFD 269
            +  D+           +D   P       +   L+  ++  +A  +A   +  +    +
Sbjct: 191 HLDEDSKRRMYSNPLRVLDSKNPDVQAILGNAPKLSQHLDAESAEHFANLCERLDAAGVE 250

Query: 270 SLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                K V         +F       G + ++     + G   +       + G      
Sbjct: 251 YQVNEKLVRGLDYYNRTVFEWVTESLGAQGTVCAGGRYDGLVEQLGGKATPAVGFAMGME 310

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWD 382
              ++    D  G I   S     + L ++     +       I A+L +   G  +   
Sbjct: 311 RLVLLLQELDCVGDIRRTS----DVYLASLGDKASIQAPV---IAAQLREQVPGIRIMVH 363

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHR 441
             G     Q   AD     + +I+G   ++   V +K+ R    ++ + L +V    +  
Sbjct: 364 AGGGNFKKQLKRADKSDAVVALILGDDELAQGLVTVKYLREHKDQQTLELSQVATLLADL 423

Query: 442 F 442
            
Sbjct: 424 I 424


>gi|171920831|ref|ZP_02695914.2| glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|185179000|ref|ZP_02964750.1| glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024105|ref|ZP_02996845.1| glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518323|ref|ZP_03003837.1| glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524322|ref|ZP_03004359.1| glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867966|ref|ZP_03079963.1| glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273368|ref|ZP_03205904.1| glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209554580|ref|YP_002284940.1| glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225550997|ref|ZP_03771943.1| glycine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|238064857|sp|B5ZC00|SYG_UREU1 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|171903603|gb|EDT49892.1| glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|184209087|gb|EDU06130.1| glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188019155|gb|EDU57195.1| glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188998056|gb|EDU67153.1| glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195660057|gb|EDX53437.1| glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660362|gb|EDX53622.1| glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198249888|gb|EDY74668.1| glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209542081|gb|ACI60310.1| glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225378812|gb|EEH01177.1| glycine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 473

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/433 (11%), Positives = 131/433 (30%), Gaps = 36/433 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGK---EML 94
           + + PLG    +N+  +  +E    +   + +    + +  +W  SG  D++     +  
Sbjct: 35  WDYGPLGVLLKNNLKNLWWKEFVTKQKDVVGLDSAIILNPLVWKASGHLDNFSDPLIDCK 94

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD---ELRPRFGVMR 151
               R     +     E +      S+ +  + L           +    E+R    + +
Sbjct: 95  NCKARYRADKLIESFDENIHIAENSSNEEFAKVLNDYEISCPTCKQFNWTEIRHFNLMFK 154

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGLKSIPMRA 197
           + + +++DA +       +       F +  R                 R  +       
Sbjct: 155 TYQGVIEDAKNVVYLRPETAQGIFVNFKNVQRSMRLHLPFGIAQIGKSFRNEITPGNFIF 214

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
            +          F+      +          ++ + +     +++       E+ +  Y+
Sbjct: 215 RTREFEQMEIEFFLKEESAYDIFDKYLNQIENWLVSACGLSLNNLRKHEHPKEELS-HYS 273

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             +            E   ++ R      +       S      F     + +   +   
Sbjct: 274 KKTIDFEYNFLHGFSELYGIAYRTNYDLSVH---MNLSKKDLTYFDEQTKEKYVPHVIEP 330

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSV------APFKISLINIKAHDQVCRDACEKIYAR 371
            +G  R++ A++  +   + +   D               I +       +D  E+IY +
Sbjct: 331 SVGVERLLYAILTEATFIEKLENDDERILMDLKYDLAPYKIAVMPLVNKLKDKAEEIYGK 390

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS---KVEIKHRLTGIRED 428
           +  +     +D+ G  IG ++   D +G    + +    + D       I+ R +  ++ 
Sbjct: 391 ILDLNISATFDNSG-SIGKRYRRQDAIGTIYCLTIDFDSLDDQQDPSFTIRERNSMAQKR 449

Query: 429 MSLEEVINYASHR 441
           + L E+  Y + +
Sbjct: 450 IKLSELPLYLNQK 462


>gi|288559908|ref|YP_003423394.1| glycyl-tRNA synthetase GlyS [Methanobrevibacter ruminantium M1]
 gi|288542618|gb|ADC46502.1| glycyl-tRNA synthetase GlyS [Methanobrevibacter ruminantium M1]
          Length = 570

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 85/284 (29%), Gaps = 27/284 (9%)

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
              Y         +  + G   I   A+ G        EF       E  ++      ++
Sbjct: 299 MAHYALDCWDVECLTDQYGWVEIIGIADRGDYDLKAHTEF----SNEELSIYI-----EY 349

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
             P          +L      +    +     + E L D   E        IE    F  
Sbjct: 350 DEPKLVKKTIVKPNLKLFGPAFKGD-SPKIKTYIENLSD---EEVIELKEKIESKGKFTL 405

Query: 291 GTKYS---LPMSATFKG----ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
               S   L     F+       G+     +     G  R++   +  S   +   +   
Sbjct: 406 ELDQSFEILKEHLLFEDIEEEVKGERIIPHVIEPSFGIDRILYCTLLHSFKTEEDGFDKE 465

Query: 344 VAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
              F   +  I+       +     +   +I   L + G  V  D  G  IG ++A AD 
Sbjct: 466 YFKFANEIAPIQVSVFPLMNRDGLGEIATEITHNLREAGFTVDNDTSG-TIGKRYARADE 524

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +G P+ + V      D  V +++R T  +E + +E++      +
Sbjct: 525 VGVPIAITVDYDTKEDDTVTVRNRDTEEQERVKIEDLKEVIETK 568



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 1/112 (0%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G   + PLG    +N+    R++     G  E+  PT+   ++   SG  D++   M +
Sbjct: 27  SGFTDYGPLGASLKNNIMQKWRKQYIAGEGFHEIEGPTVMPKEVLKASGHVDNFTDPMTK 86

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             D  +         E +  D+     +    +             EL   +
Sbjct: 87  CKDCGEVFRADHIIEEAIGEDVESLENEEMDEIVRKNDIKCPSCGGELANIW 138


>gi|330723942|gb|AEC46312.1| glycyl-tRNA synthetase [Mycoplasma hyorhinis MCLD]
          Length = 458

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/455 (11%), Positives = 128/455 (28%), Gaps = 42/455 (9%)

Query: 20  IASHKLMLRTGMIH--QHSKGI---YSWLPLGQKALDNVNAIIREEQNRTGAIE--MSVP 72
           + +H L     +    +   G+   + + PLG     N+  +  +           +   
Sbjct: 10  LINH-LKQFGFVFQGSEIYGGLANTWDYGPLGVLLKKNIQDLWWDYFITKIHNNFAIDSK 68

Query: 73  TLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            L + ++W  SG   ++     E      R     ++      +  + F           
Sbjct: 69  ILLNPNVWQVSGHTSNFNDLLIENKVNKKRYRVDHLFEEHFPNLNFNDFSQEKILELLKE 128

Query: 130 FTFYQIQLKFRDELRPRFGVMRSRE---------------FLMKDAYSFDLTPEGSKHSY 174
                     R E   +F +M   +                  +  +      + S    
Sbjct: 129 KVLKYDNSATRWEEIKQFNLMFETQQGVVEDKKSKIFLRPETAQGIFINFKNIQRSMRLK 188

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
               +  +    R  +        +          F       +          DF    
Sbjct: 189 LPFGIGQIGKSFRNEITPGNFIFRTREFEQMELEIFCHPEQANQIFDDYLNKIQDFLFNE 248

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
              + D +   +   E+      ATSD+    LF            G+     F      
Sbjct: 249 LKINKDLVRVRHHKQEELAHYSLATSDIEFLFLF------GWGELIGLANRSDFDLKAHS 302

Query: 295 S-LPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS-------VA 345
           +       +      +  +  +    +G  R++ AV+ + +  + +   +          
Sbjct: 303 AASGEKLDYLDPFTNQKFFPYIIEPSMGVDRLLLAVLTNFYKEEKLEENEEKRSLLALPY 362

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
                 + I    +       +IY  L K      +D+    IG ++ + D +G    + 
Sbjct: 363 SLSPFKVAILPLVKKLSPKALEIYNLLLKNSISATFDE-NNSIGKRYRIQDAIGTYFSIT 421

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           V  + + D+ + I+ R +  +  +++++++N+   
Sbjct: 422 VDYQSLEDNTITIRERDSMKQSRIAIDQLLNFLEK 456


>gi|212634300|ref|YP_002310825.1| histidyl-tRNA synthetase [Shewanella piezotolerans WP3]
 gi|226737078|sp|B8CKR2|SYH_SHEPW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|212555784|gb|ACJ28238.1| Histidyl-tRNA synthetase, class IIa [Shewanella piezotolerans WP3]
          Length = 424

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/423 (14%), Positives = 131/423 (30%), Gaps = 26/423 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        +  ++RE  +  G  E+  P ++S DL+  S G   D   KEM  
Sbjct: 10  GMNDILPTQSPIWQKLETVLRETVSAYGYSEIRTPIVESTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y +   FR E   +    +  +F
Sbjct: 70  FDDRNGDSLTLRPEGTASTVRAGNEHGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQF 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            ++         +      + M               + LG            I     H
Sbjct: 129 GVEVYGIPSADIDAEVLMLSAMLWEKLGITEHVTLELNTLGDSEERAAYRDALIAFLEQH 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKL 267
           + ++  D+           +D    +      D  +L   + E+  + ++   ++     
Sbjct: 189 KDVLDEDSQRRMYSNPLRVLDSKNAAVQALLADAPALMDYLGEETRSHFSHLCELLEAVG 248

Query: 268 FDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                  + V         +F       G++ ++     + G  G+       + G    
Sbjct: 249 IQYTINPRLVRGLDYYNRTVFEWVTSSLGSQGTVLAGGRYDGLVGQLGGKSTPAVGFAMG 308

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVF 380
                ++  + +    I P          + + A    CR    K+   L        V 
Sbjct: 309 LERIVLLLQTLELDKDIKP-------AVDVYVTAMGDSCRVEAIKVAQDLRASLPNLKVM 361

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYAS 439
               G     Q   AD  G  + +++G   +++++V +K+ R    +E ++ + +  Y +
Sbjct: 362 SHCGGGNFKKQMKRADKSGAAVALVIGEDELANNQVAVKYLREDKAQELVARDALATYIA 421

Query: 440 HRF 442
              
Sbjct: 422 ELV 424


>gi|149275931|ref|ZP_01882076.1| glycine--tRNA ligase (glycyl-tRNA synthetase) [Pedobacter sp.
           BAL39]
 gi|149233359|gb|EDM38733.1| glycine--tRNA ligase (glycyl-tRNA synthetase) [Pedobacter sp.
           BAL39]
          Length = 493

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/489 (12%), Positives = 143/489 (29%), Gaps = 79/489 (16%)

Query: 20  IASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSV 71
           + SH      G + Q S        +Y +  LG +  +N+     +   +     + +  
Sbjct: 13  VISHAKE--YGFVFQSSEIYDGLSAVYDYGQLGSELKNNIKTYWWKAMVQMHENIVGIDA 70

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS------- 124
                  +W  SG  D +   M+   +   +        E+ +    +            
Sbjct: 71  AIFMHPKVWKASGHVDGFNDPMIDNKESKKR-YRADQLLEDKIARYEKDGKTDKAAQLQS 129

Query: 125 ----YRNLPFTFYQIQLKFRDELRPRFGVMRSR----EFLMKDAYSFDLTPEGSKHSY-- 174
                           L    E+       R+     +F +  +  F    EGS+  Y  
Sbjct: 130 DMDQALQAEDLPRLKTLIEEHEIACPVSGTRNWTEVRQFNLMFSTQFGAMAEGSEEVYLR 189

Query: 175 ---------------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA---DT 216
                              +       ++G            I      E + +      
Sbjct: 190 PETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEVIARQFIMRMREFEQMEMQFFVRP 249

Query: 217 GETQVFCS-------KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           GE   + +       K       P++   F D + L        A YA  +     +   
Sbjct: 250 GEDAKWFAYWKEARLKWHQALGTPADKYRFHDHVKL--------AHYANAATDIEFEFPF 301

Query: 270 SLPENKRVSARG---IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
              E + + +R    +     F               G    ++   +    IG  R+  
Sbjct: 302 GFKEVEGIHSRTDFDLSQHQQFSGKKMQYFDNDLNEDGKPYGNYIPYVIETSIGLDRMFL 361

Query: 327 AVIESSHDGKGI------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             + ++ + + +                 +AP K+++  +   D    +  ++I   L  
Sbjct: 362 LTMINAFEEEDLSEGEKQDSRTLLRLHPCLAPVKVAIFPLTKKD-GLPEKAKEIMNSLK- 419

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +  +  +++    IG ++   D +G P  V V  + + D+ V ++HR +  ++ + +E +
Sbjct: 420 LDFNCIYEEKDA-IGKRYRRQDAIGTPFCVTVDHQTLEDNTVTVRHRDSMEQQRIEIEHL 478

Query: 435 INYASHRFS 443
               + + S
Sbjct: 479 ETLIASKVS 487


>gi|262039269|ref|ZP_06012587.1| histidine--tRNA ligase [Leptotrichia goodfellowii F0264]
 gi|261746763|gb|EEY34284.1| histidine--tRNA ligase [Leptotrichia goodfellowii F0264]
          Length = 412

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 129/405 (31%), Gaps = 31/405 (7%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +    ++   + G   +  P L+  +L+  S     D   KEM    D+ ++ +   P  
Sbjct: 22  IVDTAKKVFTKYGFERIITPILEETELFRRSVGDETDVVSKEMYDFKDKGERNVTLRPEG 81

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   +        +    ++     +R E   +    R REF    A  F +     
Sbjct: 82  TAGVVRAYLEAGLHKSDPVVKWFYNGPMYRYEAPQKG---RYREFHQIGAEIFGIRSPYL 138

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPM---RAESGPIGGDLSHEFIVLA------DTGETQV 221
                KM   +L      GL          ES     D   EF+         D+ +   
Sbjct: 139 DAEVIKMGCEFLEKLGITGLTVELNSLGNLESRKKYIDDLKEFMAQRLDKLSEDSKKRYE 198

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN-KRVSAR 280
                 +D     +   F D   L   +++ +  Y   +  + E L     EN K V   
Sbjct: 199 KNPLRALDSKDKGDQEQFKDAPKLYDYLDEESKKYFEDTKRYLEILGVKYVENPKLVRGL 258

Query: 281 GIEVGHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                 +F       G + ++     +         V++ + G  A    AA++    D 
Sbjct: 259 DYYSDTVFEIKSDKLGAQATVLAGGRYDRLLEILDNVKIPAIGFAAGMERAAML---MDE 315

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             +   +                   ++   K    L K G  V +D   +   +Q   A
Sbjct: 316 SLLEQKEEKIYVVYF--------DETKEYFIKTVEELRKKGIKVNFDYNPKSFSAQMKKA 367

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           + +     +I+G +   ++ V +K   TG +E  +L+EVI   + 
Sbjct: 368 NKINAEYVLILGEEEQKENVVTLKRFSTGEQEKYNLKEVIEILNK 412


>gi|288574387|ref|ZP_06392744.1| prolyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570128|gb|EFC91685.1| prolyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 480

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 112/421 (26%), Gaps = 67/421 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +  +       TG +    P L  +  L  E+   + +  E   +
Sbjct: 33  GCMVIRPTGYSVWEEIQQVFDRAFKETGHVNAYFPVLIPSSFLEKEAEHVEGFSPECAVV 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                + +                                                    
Sbjct: 93  THAGGEELEEPLVVRPTS------------------------------------------ 110

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL-SHEFIVLAD 215
             +                      L I     +     R        +    E      
Sbjct: 111 --ETVIGH----MYSKWIQSWRDLPLLINQWANVMRWEKRPRLFLRTSEFLWQEGHTAHA 164

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           + E  +  ++  ++             +      E    P A  +            E  
Sbjct: 165 SKEEAIEETERMLEVYRRIMTDYLALPVVPGVKSEGERFPGAEETYTT---------ETM 215

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G   + G  +S   +  F+       Y    S+G+ + R++ AVI +  D 
Sbjct: 216 MSDMKALQAGTSHFLGQNFSKAFNIQFQNKKEAMEYAWTTSWGV-STRLIGAVIMTHSDD 274

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVC----RDACEKIYARLSK-VGCDVFW-DDMGE-QI 388
            G+I P  +AP K++L+ I   + +          ++  ++   +G      DD    + 
Sbjct: 275 DGLILPPRIAPTKVALLPISKDETMATGPLLSKARELAGKIESVIGDRTIVVDDQFHMRP 334

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           G +F      G PL++ +G K      V    R TG + D+  + +           +  
Sbjct: 335 GDRFFYHLQKGVPLRLELGEKEFEKGTVRAVRRDTGEKIDLPWDGIETKVHELLETIQED 394

Query: 449 L 449
           L
Sbjct: 395 L 395


>gi|260494400|ref|ZP_05814531.1| histidyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
 gi|260198546|gb|EEW96062.1| histidyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
          Length = 413

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/397 (14%), Positives = 113/397 (28%), Gaps = 17/397 (4%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + ++     G   +  P  +  +L+        D   KEM    DR D+++   P +
Sbjct: 24  ISNVAQKMFENYGYNFVKTPIFEETELFKRGIGEATDVVEKEMYTFKDRGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEG 169
              +   +  +    +     FY     FR E        R REF       F + +P+ 
Sbjct: 84  TASLVRCYLENAIYAKEEISRFYYNGSMFRYERPQAG---RQREFNQIGLEVFGEKSPKV 140

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                   +    ++        I       S  I  +   E        +    C    
Sbjct: 141 DAEVIAIGYKFLEKLGISDLEVKINSVGSKESRTIYREKLIE-HFSKHLDDMCDDCKDRI 199

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
              P+   +   D                      H E +   L        +  E   +
Sbjct: 200 NRNPLRLLDCKVDKDKDFYKSAPNIIDFLFEDERKHYEDVKKYL---DVFGIKYTEDPTL 256

Query: 288 FYFGTKYSLPMSATFKGADGKDHY-----VQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
                 YS  +        G                    + + AV  ++   + ++   
Sbjct: 257 VRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAVGFATGVERIMMLLG 316

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
              P     + I    +   +   KI   L      V+ D   + + S    AD L    
Sbjct: 317 ENYPKNNPDVYIAWLGENTSETALKIAESLRDNDIKVYIDYSEKGMKSHMKKADKLSVRY 376

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +I+G   ++   V +K   T  ++++ +EE++N   
Sbjct: 377 CIILGEDELNKGIVLLKDFSTREQKEVKIEEIVNQIK 413


>gi|227328675|ref|ZP_03832699.1| histidyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 424

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/421 (13%), Positives = 126/421 (29%), Gaps = 21/421 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++  +  G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPAETALWQRIENSLKQVLSGYGYNEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF---RDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y   +       + R R      
Sbjct: 70  FDDRNGDSLTLRPEGTAGCVRAGIEHGILYNQEQRLWYVGPMFRYERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + ++           + +G      R     +     H+
Sbjct: 130 CEVFGLQGPDIDAELILMTARWWRVLGIADHVKLELNSIGSLDARARYREALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNE--- 265
             +  D            +D   P      +D   L   ++  + A + A  ++  +   
Sbjct: 190 DQLDEDCLRRMYTNPLRVLDTKNPQIQVLLNDAPVLTDYLDDESRAHFEALGELLTQSGI 249

Query: 266 --KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L        R +        G + ++     + G   +       + G     
Sbjct: 250 PYTVNPRLVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDGMVEQLGGHATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWD 382
               ++  S +        +     + LI+     Q       EK+   L ++     + 
Sbjct: 310 ERLVLLVQSVNPD----FKAQPNVDVYLISSGTGTQVAAMQLAEKLRDALPQLKLMTNY- 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             G     QFA AD  G  + +++G   V+  +V +K+   G ++ ++  +V +  +   
Sbjct: 365 -GGGNFKKQFARADKWGARVALVLGENEVAAGQVVVKNLSNGEQDTLAQADVASRLATLL 423

Query: 443 S 443
            
Sbjct: 424 D 424


>gi|308376989|ref|ZP_07440772.2| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu008]
 gi|308349250|gb|EFP38101.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu008]
          Length = 470

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/433 (13%), Positives = 133/433 (30%), Gaps = 36/433 (8%)

Query: 40  YSWLPLGQKALDNVNA-IIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM---- 93
           + + PLG +  +N+     R     R   + +    +   ++WV SG  D +   +    
Sbjct: 43  WDYGPLGVELKENIKRQWWRSVVTGRDDVVGIDSSIILPREVWVASGHVDVFHDPLVESL 102

Query: 94  ----LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT----FYQIQLKFRDELRP 145
                  AD   +A      H            ++     +T    F  +   +   +  
Sbjct: 103 ITHKRYRADHLIEAYEAKHGHPPPNGLADIRDPETGEPGQWTQPREFNMMLKTYLGPIET 162

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+   R    +  +        +        +  +    R  +        +      
Sbjct: 163 EEGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQIGKSFRNEITPGNFIFRTREFEQM 222

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               F+  A   E   +   + + + I       +++       ++ +     T D+  +
Sbjct: 223 EMEFFVEPATAKEWHQYWIDNRLQWYI-DLGIRRENLRLWEHPKDKLSHYSDRTVDIEYK 281

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             F   P  +     G+     F   T  ++S    + +   +   +   +     G  R
Sbjct: 282 FGFMGNPWGELE---GVANRTDFDLSTHARHSGVDLSFYDQINDVRYTPYVIEPAAGLTR 338

Query: 324 VVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              A +  ++                       +AP K +++ +  H          + A
Sbjct: 339 SFMAFLIDAYTEDEAPNTKGGMDKRTVLRLDPRLAPVKAAVLPLSRH-ADLSPKARDLGA 397

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R    ++ ++
Sbjct: 398 ELRKCW-NIDFDDAGA-IGRRYRRQDEVGTPFCVTVDFDSLQDNAVTVRERDAMTQDRVA 455

Query: 431 LEEVINYASHRFS 443
           +  V +Y + R  
Sbjct: 456 MSSVADYLAVRLK 468


>gi|46202001|ref|ZP_00053978.2| COG0442: Prolyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 500

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/422 (13%), Positives = 125/422 (29%), Gaps = 57/422 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +++   +      TG      P       L  E+   + + KEM  +
Sbjct: 38  GCMVIKPWGYGIWESIQRDLDRRIKETGHENCYFPLFIPLSFLEKEAAHVEGFAKEMAVV 97

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                       +  L     ++    + E              
Sbjct: 98  T---------------------------HHRLVAEDGKLVPSGKLEEP------------ 118

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    +      ++ +   SY  +   +   +  +R E  P     + EF+     
Sbjct: 119 ---LVVRPTSETIIGDAFARWIQSYRDLPMLVNQWANVVRWEMRPRIFLRTAEFL--WQE 173

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T    +++ M+  +         ++S   +            +           E   
Sbjct: 174 GHTAHATAEEAMEETLRMLEVY--RVMSEEVLAMPVIVGEKPAHERFPGADKTYSIEAMM 231

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  +S   +  ++ A G + +    S+G+ + R++  VI S  D  
Sbjct: 232 QDGKALQAGTSHFLGQHFSKAQNIRYQTAQGGEEFCFTTSWGV-STRLIGGVIMSHADDN 290

Query: 337 GIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGC-----DVFWDDMGEQI 388
           G+  P  +AP +I  + I   D    +  +    +   LS          V  D      
Sbjct: 291 GLRVPPRIAPKQIVFVPITRADGDEALIDEFLAPVVKELSAQSFGGERLRVHVDRRPLAP 350

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEEVINYASHRFSNNRP 447
             +       G P+   VG + V+   + +  R   ++  +   +E +  A+   ++ + 
Sbjct: 351 PEKRWEWVKKGAPIICEVGPRDVAGGTIAMIRRDGELKGQITPKDEFVARAASILADIQN 410

Query: 448 VL 449
            L
Sbjct: 411 SL 412


>gi|255994167|ref|ZP_05427302.1| histidine--tRNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993835|gb|EEU03924.1| histidine--tRNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 418

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 65/419 (15%), Positives = 127/419 (30%), Gaps = 38/419 (9%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE---SGRYDSYGKEMLRLA 97
             +P        +     +  +  G  E+  P ++  +L+     SG  D   KEM    
Sbjct: 10  DLMPKETALFRYLENEFLKVASSYGYNEIMTPVIEYTELFSRGVGSG-TDIVQKEMYTFK 68

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D   +++   P     +   +    +  +  P  +  +   FR E        R R F  
Sbjct: 69  DLGGRSISLRPEGTAGVARAYVQSGELSKAKPVKYSYVSSCFRYEKPQSG---RQRMFHQ 125

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHEFIVLAD 215
                F      +      +   +L     +GLK I ++  S       +   E +V   
Sbjct: 126 LGIECFGSKEVQADAEVIMLASDFLNN---IGLKEITLKINSIGCNKCREKYKEALVKYY 182

Query: 216 TGETQVFCSKDFMDFPIPSEN---TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
              ++  C    +              D+    +S          +       KL + L 
Sbjct: 183 ESVSENLCETCKIRLNTNPMRLLDCKEDECTKYSSDAPSILDFICSECANDFSKLQELLT 242

Query: 273 ENKRV------SARGIEV--GHIFYF-----GTKYSLPMSATFKGADGK--DHYVQMGSY 317
           +            RG++      F F     G K ++     +                +
Sbjct: 243 DAGIQYEVDPRIVRGLDYYNKTAFEFIHENIGAKATVCGGGRYDNLINTLAGIEEPGIGF 302

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           GIG  R++ A+   + D                 + I A + V  +    I   L   G 
Sbjct: 303 GIGLERLMLAIDSENIDK--------SISTSPEYVIIPAGENVPYEKIYAIAKMLRNSGK 354

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            V  D M     S    A+ +     +I+G   + +  V +K+  +G ++ + + E++N
Sbjct: 355 TVVVDIMNRNFKSLIKYANKINAKYALILGEDELKNEAVTVKNMASGDQKTVKISELVN 413


>gi|262161299|ref|ZP_06030410.1| histidyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|262168792|ref|ZP_06036487.1| histidyl-tRNA synthetase [Vibrio cholerae RC27]
 gi|262022910|gb|EEY41616.1| histidyl-tRNA synthetase [Vibrio cholerae RC27]
 gi|262029049|gb|EEY47702.1| histidyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
          Length = 412

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/411 (14%), Positives = 119/411 (28%), Gaps = 16/411 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V  +++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 5   LPTQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFL 156
             ++   P            +   Y      +Y +   FR E       R       E  
Sbjct: 65  GDSLTLRPEGTAGCVRSGIENGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQCGVEVF 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             D    D           +            + +G         +  I     ++ ++ 
Sbjct: 124 GLDGPDVDAELIMMTARLWRELGIAQHVRLELNSIGSLEARANYRTALIDYLEQYQNVLD 183

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSLP 272
            D            +D   P       D   L+  ++  +   +A   ++ +    +   
Sbjct: 184 EDCKRRMYTNPLRVLDSKNPDVQAILGDAPQLSDYLDAESKQHFAGLCELLDAAGIEYTV 243

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             + V         +F      SL    T  G  G  +   +   G      V   +   
Sbjct: 244 NQRLVRGLDYYNRTVFE-WITESLGSQGTVCG--GGRYDGLVEQLGGKPTPAVGFAMGLE 300

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGS 390
                +    +    +   + +    +    A  K+  +L +   G  V     G     
Sbjct: 301 RLVLMMETLGNTDVRRSVDVYMVTAGEGTMMAGMKLAEQLREQVPGLRVMTHFGGGNFKK 360

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           QF  AD +G  + +++G   V+   V +K    G +  ++  EV    +H 
Sbjct: 361 QFKRADKVGAAIALVLGEDEVAAQTVVVKDLAGGEQNTVAQAEVAKLLAHL 411


>gi|15640779|ref|NP_230409.1| histidyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121591433|ref|ZP_01678711.1| histidyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121726005|ref|ZP_01679304.1| histidyl-tRNA synthetase [Vibrio cholerae V52]
 gi|147674318|ref|YP_001216245.1| histidyl-tRNA synthetase [Vibrio cholerae O395]
 gi|153216233|ref|ZP_01950333.1| histidyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|153800575|ref|ZP_01955161.1| histidyl-tRNA synthetase [Vibrio cholerae MZO-3]
 gi|153817271|ref|ZP_01969938.1| histidyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|153822725|ref|ZP_01975392.1| histidyl-tRNA synthetase [Vibrio cholerae B33]
 gi|153824620|ref|ZP_01977287.1| histidyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|153828282|ref|ZP_01980949.1| histidyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|227080939|ref|YP_002809490.1| histidyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229505626|ref|ZP_04395136.1| histidyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229510702|ref|ZP_04400181.1| histidyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229513101|ref|ZP_04402567.1| histidyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|229517824|ref|ZP_04407268.1| histidyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229523418|ref|ZP_04412825.1| histidyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|229530110|ref|ZP_04419500.1| histidyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|229608644|ref|YP_002879292.1| histidyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254847897|ref|ZP_05237247.1| histidyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255744566|ref|ZP_05418517.1| histidyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262192499|ref|ZP_06050650.1| histidyl-tRNA synthetase [Vibrio cholerae CT 5369-93]
 gi|297581159|ref|ZP_06943083.1| histidyl-tRNA synthetase [Vibrio cholerae RC385]
 gi|298499107|ref|ZP_07008914.1| histidyl-tRNA synthetase [Vibrio cholerae MAK 757]
 gi|31077006|sp|Q9KTX0|SYH_VIBCH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|172047440|sp|A5F3G1|SYH_VIBC3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|254782354|sp|C3LT13|SYH_VIBCM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|9655206|gb|AAF93925.1| histidyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121546710|gb|EAX56887.1| histidyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121631487|gb|EAX63857.1| histidyl-tRNA synthetase [Vibrio cholerae V52]
 gi|124114378|gb|EAY33198.1| histidyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|124123864|gb|EAY42607.1| histidyl-tRNA synthetase [Vibrio cholerae MZO-3]
 gi|126512187|gb|EAZ74781.1| histidyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|126519756|gb|EAZ76979.1| histidyl-tRNA synthetase [Vibrio cholerae B33]
 gi|146316201|gb|ABQ20740.1| histidyl-tRNA synthetase [Vibrio cholerae O395]
 gi|148876236|gb|EDL74371.1| histidyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|149741838|gb|EDM55867.1| histidyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|227008827|gb|ACP05039.1| histidyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|227012584|gb|ACP08794.1| histidyl-tRNA synthetase [Vibrio cholerae O395]
 gi|229333884|gb|EEN99370.1| histidyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|229339781|gb|EEO04796.1| histidyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|229344539|gb|EEO09513.1| histidyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229349994|gb|EEO14948.1| histidyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|229350667|gb|EEO15608.1| histidyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229357849|gb|EEO22766.1| histidyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229371299|gb|ACQ61722.1| histidyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254843602|gb|EET22016.1| histidyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255737597|gb|EET92991.1| histidyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262031658|gb|EEY50245.1| histidyl-tRNA synthetase [Vibrio cholerae CT 5369-93]
 gi|297534475|gb|EFH73312.1| histidyl-tRNA synthetase [Vibrio cholerae RC385]
 gi|297543440|gb|EFH79490.1| histidyl-tRNA synthetase [Vibrio cholerae MAK 757]
          Length = 422

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/411 (14%), Positives = 119/411 (28%), Gaps = 16/411 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V  +++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFL 156
             ++   P            +   Y      +Y +   FR E       R       E  
Sbjct: 75  GDSLTLRPEGTAGCVRSGIENGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQCGVEVF 133

Query: 157 MKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             D    D           +            + +G         +  I     ++ ++ 
Sbjct: 134 GLDGPDVDAELIMMTARLWRELGIAQHVRLELNSIGSLEARANYRTALIDYLEQYQNVLD 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSLP 272
            D            +D   P       D   L+  ++  +   +A   ++ +    +   
Sbjct: 194 EDCKRRMYTNPLRVLDSKNPDVQAILGDAPQLSDYLDAESKQHFAGLCELLDAAGIEYTV 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             + V         +F      SL    T  G  G  +   +   G      V   +   
Sbjct: 254 NQRLVRGLDYYNRTVFE-WITESLGSQGTVCG--GGRYDGLVEQLGGKPTPAVGFAMGLE 310

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGS 390
                +    +    +   + +    +    A  K+  +L +   G  V     G     
Sbjct: 311 RLVLMMETLGNTDVRRSVDVYMVTAGEGTMMAGMKLAEQLREQVPGLRVMTHFGGGNFKK 370

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           QF  AD +G  + +++G   V+   V +K    G +  ++  EV    +H 
Sbjct: 371 QFKRADKVGAAIALVLGEDEVAAQTVVVKDLAGGEQNTVAQAEVAKLLAHL 421


>gi|229541948|ref|ZP_04431008.1| glycyl-tRNA synthetase [Bacillus coagulans 36D1]
 gi|229326368|gb|EEN92043.1| glycyl-tRNA synthetase [Bacillus coagulans 36D1]
          Length = 512

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/453 (12%), Positives = 122/453 (26%), Gaps = 48/453 (10%)

Query: 30  GMI---HQHSKGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWV 81
           G I    +   G+   + + PLG +  +NV     ++  +     + +    L +   W 
Sbjct: 68  GFIFPGSEIYGGLANTWDYGPLGVEFKNNVKKAWWKKFIQESPYNVGLDAAILMNPRTWE 127

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            SG   ++   M+       +          +        +                   
Sbjct: 128 ASGHLGNFNDPMIDCKHCKARHRADKLIENALHEKGIDMIVDGLPFEKMEELIKTHDIAC 187

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRI 184
                      R+F +       +T + +   Y                   M       
Sbjct: 188 PDCGSKDWTGIRQFNLMFKTYQGVTEDSTNELYLRPETAQGIFVNFKNVQRTMRKKLPFG 247

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIV---LADTGETQVFCSKDFMDFPIPSENT-DFD 240
             ++G            I      E +        GE   +             N    +
Sbjct: 248 IAQIGKSFRNEITPGNFIFRTREFEQMELEFFCRPGEELKWFDYWKQYAREFLLNLGMKE 307

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           + + L    ++  + Y+  +            E   +++R                    
Sbjct: 308 ENLRLRDHEKEELSHYSNATTDFEYNFPFGWGELWGIASRTDYDLKRH----MEYSGEDF 363

Query: 301 TFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSH---------DGKGIIWPDSVAPFKIS 350
           T+      +          +GA RV  A +  S+             +    ++AP+K +
Sbjct: 364 TYLDQETNERFVPYCIEPSLGADRVALAFLIDSYAEEELEDGTSRTVMHLHPALAPYKAA 423

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           ++ +             I++ LSK    V +D+ G  IG ++   D +G P  +      
Sbjct: 424 VLPLSKK---LSAEARDIFSDLSKT-FMVDFDETG-SIGKRYRRQDEIGTPFCITYDFDS 478

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             D  V ++ R T  +  + + E+  +   +  
Sbjct: 479 RDDHMVTVRDRDTMEQTRVPITELKAFLEEKIK 511


>gi|167043358|gb|ABZ08061.1| putative tRNA synthetase class II core domain (G, H, P, S and T)
           [uncultured marine crenarchaeote HF4000_ANIW141O9]
          Length = 479

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/460 (11%), Positives = 127/460 (27%), Gaps = 61/460 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G + + P G    +    + R E  R    IE+    + S  ++  SG   S+   ++R
Sbjct: 22  AGFWEYGPAGVGLKNKFIELWRRELIRRDKMIEVDGSQIMSKSVFEASGHLASFADPIVR 81

Query: 96  LA--------------------------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
                                       D  DK +             F S  K      
Sbjct: 82  CTKCKSTYRADKIIVDATKTVIPESAGLDEFDKVITEKNVKCPKCNGDFGSTKKFNMMFQ 141

Query: 130 FTFYQIQLKFRDELRPRFG-----------VMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
                   +                     +       +             + S  ++ 
Sbjct: 142 VGIGPEGEEAYLRPETCQSIFVDFPRLFKTMRGKLPLGIAQIGKSFRNEIAPRQSLLRLR 201

Query: 179 VSYLRIFHRLGLKSIPMRAESG--------PIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
             Y          +     +          PI  D   + +   +  ++++  +K    +
Sbjct: 202 EFYQAEIEVFCNPARLNDLDKFSEIENTKIPIQVDNEVKIMTCKEAVDSKIIPNKFVAYY 261

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE---NKRVSARGIEVGHI 287
                  +F +   ++    ++          + E  FD   E                 
Sbjct: 262 L--GILIEFYEKAGIDIQKSRFRKLEEKEKAFYAEVAFDFEVETTTGWLELVACNYRADY 319

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------SHDGKGIIWP 341
              G              D +     +    +G  R +  ++E        +D   +   
Sbjct: 320 DLSGHATKSKEKFEVMDND-EKVLPHVFELSMGIDRSLYTILEHSLREDKENDRTVLSLK 378

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             ++P  + ++++   D    +  ++IY ++ +   DVF D  G  IG ++   D +G P
Sbjct: 379 PYLSPIHVGVLSLVKKD-GLAEKTDEIYLKIKRK-YDVFLDHSGA-IGRRYRRLDEVGAP 435

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             + +  + + D  V ++ R +  +  + + E+    S +
Sbjct: 436 YAITIDHQTLQDDTVTLRMRDSMEQNRIKVSELDEILSKK 475


>gi|237744014|ref|ZP_04574495.1| histidyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|229431243|gb|EEO41455.1| histidyl-tRNA synthetase [Fusobacterium sp. 7_1]
          Length = 413

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/397 (14%), Positives = 113/397 (28%), Gaps = 17/397 (4%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + ++     G   +  P  +  +L+        D   KEM    DR D+++   P +
Sbjct: 24  ISNVAQKMFENYGYNFVKTPIFEETELFKRGIGEATDVVEKEMYTFKDRGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEG 169
              +   +  +    +     FY     FR E        R REF       F + +P+ 
Sbjct: 84  TASLVRCYLENAIYAKEEISRFYYNGSMFRYERPQAG---RQREFNQIGLEVFGEKSPKV 140

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                   +    ++        I       S  I  +   E        +    C    
Sbjct: 141 DAEVIAIGYKFLKKLGISDLEVKINSVGSKESRTIYREKLIE-HFSKHLDDMCDDCKDRI 199

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
              P+   +   D                      H E +   L        +  E   +
Sbjct: 200 NRNPLRLLDCKVDKDKDFYKSAPNIIDFLFEDERKHYEDVKKYL---DVFGIKYTEDPTL 256

Query: 288 FYFGTKYSLPMSATFKGADGKDHY-----VQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
                 YS  +        G                    + + AV  ++   + ++   
Sbjct: 257 VRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAVGFATGVERIMMLLG 316

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
              P     + I    +   +   KI   L      V+ D   + + S    AD L    
Sbjct: 317 ENYPKNNPDVYIAWLGENTSETALKIAESLRDNDIKVYIDYSEKGMKSHMKKADKLSVRY 376

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +I+G   ++   V +K   T  ++++ +EE++N   
Sbjct: 377 CIILGEDELNKGIVLLKDFSTREQKEVKIEEIVNQIK 413


>gi|118579805|ref|YP_901055.1| histidyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
 gi|259511953|sp|A1ANS7|SYH_PELPD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|118502515|gb|ABK98997.1| histidyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
          Length = 414

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/413 (14%), Positives = 113/413 (27%), Gaps = 41/413 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    R    R G  E+ VP ++  +L+  S     D   KEM    D+ + ++   
Sbjct: 20  WQYIEQAARRIFERNGFSEIRVPIMEKTELFCRSIGDTSDIVEKEMYTFTDKGENSVTLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  H    ++     Y +   FR E   +    R R+F    A    +T 
Sbjct: 80  PEGTAGVMRAYIEHKMHAQDPLAKLYYLGPMFRYERPQKG---RYRQFHQIGAEVTGVTD 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVLADTGETQVFCS 224
                    M  ++                   +  P       EF+     G     C 
Sbjct: 137 PLVDAQVLNMLCAFFHEIGLDEPTLQINSLGCPDCRPAYRAALMEFL----QGRLDRLCD 192

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTA---PYAATSDVHNEKLFDSL---------- 271
                F +    T            +   A         D H   +   L          
Sbjct: 193 DCKRRFTVNPLRTLDCKSAGCAEATKGAPAMLDHLCTACDDHFSSVKRYLDLTGSRYSIN 252

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      R          G + ++     + G   +     +   G        A+
Sbjct: 253 PRMVRGLDYYTRTTFELVTGLLGAQSAVAAGGRYDGLISQLGGPSIPGIGFAMGVERVAL 312

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +    D             +   + I       RD    +  +L   G  V  D  G+ +
Sbjct: 313 LLGERDFS-----------RRPDLFIATMGAGQRDKAFCLLTKLQNQGIRVEMDYEGKSL 361

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL--EEVINYAS 439
            SQ   AD L     V++G   ++  +   K    G++ + +L  ++++   +
Sbjct: 362 KSQMRRADKLRARFSVVIGENELATGRASFKRMEDGVQNEAALEADDIVTLLA 414


>gi|297181247|gb|ADI17441.1| histidyl-tRNA synthetase [uncultured Rhodospirillales bacterium
           HF0070_31K06]
          Length = 414

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/416 (15%), Positives = 122/416 (29%), Gaps = 21/416 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G +  LP   +A  +V    R+   R G  EM+ P  +S+D++  +     D   KEM  
Sbjct: 9   GTHDLLPEAMRAHRSVIGCARDVAERYGFEEMATPIFESSDVFRRTLGDTSDIVTKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  + +   P +   +   F S     ++ P  F+     FR E   +    R R+F
Sbjct: 69  FTTKGGEEITLRPENTAGVARCFISEGL-AQSTPLKFFYAGPMFRHERPQKG---RLRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +           L      G   + +          +  E +V   
Sbjct: 125 HQIGIETVGFAGPQADIEIIAAGARILSELGLQGKTVLQLNTLGDSESRSVYREALVTYF 184

Query: 216 TG---ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           T    E            P+   ++  +   S+ +    +T      S    E++ + L 
Sbjct: 185 TKRVDELSQESRDRLNRNPLRILDSKNEGDRSVVADAPSFTNHLNEESRAFFEQVQEGLT 244

Query: 273 ------ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                 E      RG++      F    +   +     A G+   +     G     +  
Sbjct: 245 ALGIAFELNERLVRGLDYYGHTAFEFTTTELGAQGAVMAGGRYDGLIETMGGPKTPGIGW 304

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A             P +  P       +             +   L   G  V     G 
Sbjct: 305 AAGVERLAMLRGDPPPARRPVA-----LVPLGAAAEARAFVLAEELRASGLRVDVGFSG- 358

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +G +   AD +     V++G   ++     ++    G +E++ L  +    S   
Sbjct: 359 NLGRRMKRADRMNAAAAVLIGDDELAKDVATVRDMDGGEQEEVPLGALRERLSGYL 414


>gi|167772470|ref|ZP_02444523.1| hypothetical protein ANACOL_03848 [Anaerotruncus colihominis DSM
           17241]
 gi|167665573|gb|EDS09703.1| hypothetical protein ANACOL_03848 [Anaerotruncus colihominis DSM
           17241]
          Length = 465

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/395 (15%), Positives = 114/395 (28%), Gaps = 15/395 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +     +     G  E+ VPT +  +L+  S     D   KEM    D+ D+++   
Sbjct: 50  WRYIEETALDTARLFGFEEIRVPTFEHTELFNRSVGDTTDVVQKEMYTFFDKGDRSITLR 109

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +      +      LP     +   FR E        R REF            
Sbjct: 110 PEGTAGVMRAILQNGLIGGPLPVKASYVVSCFRYEKPQAG---RLREFHQFGVEMAGAAS 166

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI---VLADTGETQVFCS 224
             +      +  +        GL          P      HE +     A  GE    C 
Sbjct: 167 PAADAQVIALAKAVFDALGVTGLALEINSIGC-PECRARYHEALRAYFQARAGELCDTCR 225

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF---DSLPENKRV---S 278
                 P+   +        + +   +           H E L    D+L     V    
Sbjct: 226 ARLEKNPMRILDCKSPVCSQIAAGAPRVLDYICDGCRAHFEGLKTRLDALGIAYTVNPAI 285

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RG++      F    +   +       G+   +     G     +  A+          
Sbjct: 286 VRGLDYYTRTVFEFVATGIGAQGTVCGGGRYDGLIEMLGGAPTPSIGFAMGLERLLLVMD 345

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
               +    +   + I +  +       ++   L + G     D +G  + +Q   AD L
Sbjct: 346 QQGCAFPEPQWCTMYIGSMGEAASVRAMQLADGLRQEGFWAECDTVGRSVKAQMKYADKL 405

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G     I+G   ++  KV +K    G + +++L+E
Sbjct: 406 GAKFSCILGDNELAAGKVTVKRMDNGTQTELTLDE 440


>gi|300709494|ref|YP_003735308.1| glycyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
 gi|299123177|gb|ADJ13516.1| glycyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
          Length = 600

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 98/351 (27%), Gaps = 45/351 (12%)

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +   +L          +  E +        RE++             +            
Sbjct: 231 RDEPDLSRVSDVEVTLYPIENQ----REEGREYVTTTIGEAVADGTIASEWVAYYLGIAQ 286

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             + R+G+     R      G          +D  + +     D+++    +   D+D  
Sbjct: 287 EWYERVGIDMNRFRFRQHLPG----ERAHYASDCWDAEAELGGDWVEIAGFAYRGDYDLS 342

Query: 243 ISLNSIVEQWTAPYAATSDVHNE--------------------KLFDSLPENKRVSARGI 282
                  + +T        +  E                    ++ D+L           
Sbjct: 343 KHAEHADQDFTVFEQYDEPITTERATVDPDMSYLGPEFGGKAAEIADALEALAERDRSAF 402

Query: 283 EVGHIFYFGTKYS-------LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           +   +       S          S       G+     +     G  R + A+   ++  
Sbjct: 403 DDETVSVELDDESYEVPTEKTGFSIEEVTESGEHVTPHVVEPSFGVGRTLYALFAHAYRE 462

Query: 336 KGII--------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
             +             +AP  + +  +   D    +   ++ + L   G +V +DD G  
Sbjct: 463 DEVDGEERSYLSLAPEMAPTTVGVFPLMDRD-GLGERARELASELRAAGLEVAYDDSG-N 520

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           IG ++   D +G P  V V  + + D  V ++ R +  +  + + +++   
Sbjct: 521 IGRRYRRQDEVGTPFCVTVDYESLEDGTVTLRDRDSTTQVRVPIVQLVGVL 571



 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/407 (13%), Positives = 102/407 (25%), Gaps = 55/407 (13%)

Query: 24  KLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQS 76
           +L  R G     +       G Y++ P G     ++    R+    R G  E+  PT+  
Sbjct: 15  ELAKRRGFFFPSNGVYGGVAGFYTYGPEGAALKRHLEDAWRDRFTVREGNREIEAPTVMP 74

Query: 77  ADLWVESGRYDSYGKEMLRL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
             ++  SG  D +   ++       + R D  +      E+          +  R     
Sbjct: 75  EAVFEASGHLDGFDDMLVECAECGESHRADHLIEDNTAIEDAEALPISEVEELIREHELV 134

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY-------NKMFVSYLRI 184
                     E    F +M           +  + PE ++  +                 
Sbjct: 135 CPSCGAALAGEPVEEFNLMFETTIGPGSGQTGYMRPETAQGIFVEFPQLAEYARNQLPFG 194

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH-----EFIVLADTGETQVFCSKDFMDFPIPSEN--- 236
             ++G       +    I           E  V  +  E  +    D      P EN   
Sbjct: 195 VTQIGPAYRNEISPRKGIIRVREFTQAELEQFVDPERDEPDLSRVSDVEVTLYPIENQRE 254

Query: 237 -------TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                  T   + ++  +I  +W A Y   +    E++   +   +       E  H   
Sbjct: 255 EGREYVTTTIGEAVADGTIASEWVAYYLGIAQEWYERVGIDMNRFRFRQHLPGERAH--- 311

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
                S    A      G D     G    G   +      +  D       D     + 
Sbjct: 312 ---YASDCWDAE--AELGGDWVEIAGFAYRGDYDLSKHAEHADQDFTVFEQYDEPITTER 366

Query: 350 SLINIKAH--DQVCRDACEKIYARLSKV-----------GCDVFWDD 383
           + ++               +I   L  +              V  DD
Sbjct: 367 ATVDPDMSYLGPEFGGKAAEIADALEALAERDRSAFDDETVSVELDD 413


>gi|303229444|ref|ZP_07316234.1| histidine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|303230874|ref|ZP_07317621.1| histidine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514634|gb|EFL56629.1| histidine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302515980|gb|EFL57932.1| histidine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 423

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/418 (14%), Positives = 120/418 (28%), Gaps = 21/418 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLA- 97
            +LP        +   +RE     G  E+  P  +   L++       D   KEM   + 
Sbjct: 11  DFLPEQIVNWHYIEQHMREICKAYGFSEIRTPAFEDTKLFLRGIGETTDVVSKEMYTFST 70

Query: 98  -DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D  +++    P +       +  +    +     ++ +   FR +        R REF 
Sbjct: 71  GDDKEQSYTLRPENTASAVRAYLENKVYGKENLTKWFYMGSMFRHDKPQAG---RYREFH 127

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
              A                M V  L      GLK + +   S             L + 
Sbjct: 128 QFGAEVLGSPSPVVDSEVICMIVQLL---KDFGLKDLNVEVNSVGCPNCRPTYRQKLIEF 184

Query: 217 GETQVF-----CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            E +       C +     P+   +   +   +L+    +         + H E+L   L
Sbjct: 185 FEPKKDQLCEDCQERLYKNPLRLLDCKNETCKALSVGAPEIHEHLCEECNTHFEELKTLL 244

Query: 272 PENKRVSA------RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                         RG++      F  +Y+   + +     G+   +     G     + 
Sbjct: 245 DAANIQYNLNPRLVRGLDYYTKTAFEVQYTPLGAQSAVAGGGRYDGLVEELDGPHTPAIG 304

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A+                 P     + + A  +  +    KI   L         D  G
Sbjct: 305 FAMGMERLLLALEKQNLLPEPTIEPAVFVVALGEAAKLEAFKICQTLRSAYITAEMDGQG 364

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + +Q   A+ +     +IVG   ++  +  I+   T  +E + L  V    S    
Sbjct: 365 KSMKAQLKYANKIHAKYVIIVGDDELAKQEAIIRFMETSEQETVPLASVSERISSLVK 422


>gi|52631983|gb|AAU85385.1| glutaminyl-tRNA synthetase [Sus scrofa]
          Length = 337

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 56/175 (32%), Gaps = 11/175 (6%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGI 338
           R I+     + G  +S      F+                G   R +  +     D  G+
Sbjct: 59  RAIQGATSHHLGQNFSKMFEIVFEDPKTPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGL 118

Query: 339 IWPDSVAPFKISLINIKAHD-------QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGS 390
           + P  VA  ++ +I     +             C     RL  V   V  D       G 
Sbjct: 119 VLPPRVACVQVVVIPCGITNALAEEDRDALMAKCHDYERRLVSVNIRVRVDLRDNYSPGW 178

Query: 391 QFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +F   +L G P+++ VG + +     V ++ R TG +  ++  E          +
Sbjct: 179 KFNHWELKGVPVRLEVGPRDMKSCQFVAVR-RDTGEKLTLAENEAETKLHALLED 232


>gi|215404284|ref|ZP_03416465.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|254551404|ref|ZP_05141851.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260201481|ref|ZP_05768972.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|260205658|ref|ZP_05773149.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis K85]
 gi|297634959|ref|ZP_06952739.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis KZN 4207]
 gi|306798228|ref|ZP_07436530.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu006]
 gi|307085034|ref|ZP_07494147.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu012]
 gi|308370988|ref|ZP_07423467.2| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu003]
 gi|308373390|ref|ZP_07432133.2| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu005]
 gi|313659285|ref|ZP_07816165.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis KZN V2475]
 gi|308330130|gb|EFP18981.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu003]
 gi|308337772|gb|EFP26623.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu005]
 gi|308341453|gb|EFP30304.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu006]
 gi|308365406|gb|EFP54257.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu012]
 gi|323719024|gb|EGB28172.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis CDC1551A]
          Length = 459

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/433 (13%), Positives = 133/433 (30%), Gaps = 36/433 (8%)

Query: 40  YSWLPLGQKALDNVNA-IIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM---- 93
           + + PLG +  +N+     R     R   + +    +   ++WV SG  D +   +    
Sbjct: 32  WDYGPLGVELKENIKRQWWRSVVTGRDDVVGIDSSIILPREVWVASGHVDVFHDPLVESL 91

Query: 94  ----LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT----FYQIQLKFRDELRP 145
                  AD   +A      H            ++     +T    F  +   +   +  
Sbjct: 92  ITHKRYRADHLIEAYEAKHGHPPPNGLADIRDPETGEPGQWTQPREFNMMLKTYLGPIET 151

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+   R    +  +        +        +  +    R  +        +      
Sbjct: 152 EEGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQIGKSFRNEITPGNFIFRTREFEQM 211

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               F+  A   E   +   + + + I       +++       ++ +     T D+  +
Sbjct: 212 EMEFFVEPATAKEWHQYWIDNRLQWYI-DLGIRRENLRLWEHPKDKLSHYSDRTVDIEYK 270

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             F   P  +     G+     F   T  ++S    + +   +   +   +     G  R
Sbjct: 271 FGFMGNPWGELE---GVANRTDFDLSTHARHSGVDLSFYDQINDVRYTPYVIEPAAGLTR 327

Query: 324 VVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              A +  ++                       +AP K +++ +  H          + A
Sbjct: 328 SFMAFLIDAYTEDEAPNTKGGMDKRTVLRLDPRLAPVKAAVLPLSRH-ADLSPKARDLGA 386

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R    ++ ++
Sbjct: 387 ELRKCW-NIDFDDAGA-IGRRYRRQDEVGTPFCVTVDFDSLQDNAVTVRERDAMTQDRVA 444

Query: 431 LEEVINYASHRFS 443
           +  V +Y + R  
Sbjct: 445 MSSVADYLAVRLK 457


>gi|85712736|ref|ZP_01043781.1| Histidyl-tRNA synthetase [Idiomarina baltica OS145]
 gi|85693468|gb|EAQ31421.1| Histidyl-tRNA synthetase [Idiomarina baltica OS145]
          Length = 415

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 70/435 (16%), Positives = 122/435 (28%), Gaps = 63/435 (14%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLAD 98
             LP    A   V AIIR+     G  E+ +P L+S  L+  S G   D   KEM    D
Sbjct: 3   DLLPEQTAAWQQVEAIIRQVAASYGYQEIRMPVLESTALFKRSIGEVTDIVEKEMYTFDD 62

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF--- 155
           RN +++   P            H   Y  +   +Y +   FR E   +    +  +F   
Sbjct: 63  RNGESVTLRPEGTASCVRAGNQHGLLYNQIQRLWY-MGPMFRYERPQKGRYRQFHQFGIE 121

Query: 156 -------------------LMKDAYSFDLTPEGSK--------HSYNKMFVSYLRIFHRL 188
                              L K     D                 Y      YL  +   
Sbjct: 122 TFGLEGADADAEVILLSARLWKALGMADQVELQLNSLGSNEARARYRDALRDYLEQYKSE 181

Query: 189 GLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             +    R ++ P  I          L +          +             D      
Sbjct: 182 LDEDSQRRLDTNPLRILDSKDGNTQQLLEQAPKLSDYWDEESKQHFDELKARLDAAGIPY 241

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E+        +    E +  +L     V A G   G +   G K +           
Sbjct: 242 VFNERLVRGLDYYNRTVFEWVTTALGAQGTVCAGGRYDGLVEQLGGKAT----------- 290

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDAC 365
                     + +G  R+V  +       +              L+ +    +   +   
Sbjct: 291 ------PAVGFAMGMERLVLLL-------QEQEKLAPRRAVDAYLMPLGEAAELNAQAVA 337

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTG 424
           EK+   L  +   V     G  +  Q   AD  G  + +I+G   + ++++ +K  R T 
Sbjct: 338 EKLRNELPDLRIVVH--SGGGAMKKQIKKADKSGAEVALILGENELENNQLTVKPLRTTD 395

Query: 425 IREDMSLEEVINYAS 439
            ++ +   E++    
Sbjct: 396 DQQTLGWGELVVALK 410


>gi|297850190|ref|XP_002892976.1| hypothetical protein ARALYDRAFT_472010 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338818|gb|EFH69235.1| hypothetical protein ARALYDRAFT_472010 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 458

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/346 (11%), Positives = 97/346 (28%), Gaps = 44/346 (12%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKD 159
           D+       +   +             LP       +  R+E      G+ R R F+  D
Sbjct: 143 DEGFFCDAFYHGELGLNDNHFPNIEAELPIRMADFGVLHRNEESGALSGMTRVRRFVQDD 202

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           A+ F    +  +     +      ++   G     ++  +                  E 
Sbjct: 203 AHIFCRVDQVGEE-VKGVLDFIDYVYKIFGFTYE-LKLSTP-----------------EK 243

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           +     +  D          D+      I +   A Y    D+    + D++    + + 
Sbjct: 244 KYIGDLETWDKAEKDLEKALDNFGKPWVINKGDGAFYGPKIDI---TVSDAMKRKFQCAT 300

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKG 337
             ++    F             +     +     M    +     R+ A ++E       
Sbjct: 301 LQLD----FQLPA----CFKLKYITKKNEKERPVMIHRAVLGSIERMFAILLEHYKGIWP 352

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                           + +  +      +++  ++ + G  V  D+    I  + A A  
Sbjct: 353 FWLSPR-------QAIVCSLSEDYSSYAKQVQKQIQEAGYYVDIDESDRSICKKVADARA 405

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSLEEVINYAS 439
             +   ++VG K  +  +V ++ R          +MS++ +++   
Sbjct: 406 APYNYILVVGQKEATTGQVTVRLREDPAGRKDLPEMSIDSLLDEFK 451


>gi|530417|emb|CAA83730.1| Thr-tRNA Synthetase 1 [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 320

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 4/133 (3%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           RD  + + +L +  G       G+  WLP G    + +   +R+++     I +  P + 
Sbjct: 174 RDHRLINKRLNIF-GFDQLVGAGLPLWLPNGFIVKNEIEKYLRQKEWEYDYIPVETPPIG 232

Query: 76  SADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
           + +L+  SG +D YG++  +  +    +D+  I  P +      ++ ++ + YR+LP   
Sbjct: 233 TVELYKTSGHWDHYGEDXFQPFNGGKGSDEQFILRPMNCPHXIAVYNTNKEXYRDLPLRI 292

Query: 133 YQIQLKFRDELRP 145
            +  +  R E   
Sbjct: 293 CEHAIHHRFESSG 305


>gi|50122141|ref|YP_051308.1| histidyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
 gi|81693156|sp|Q6D277|SYH_ERWCT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|49612667|emb|CAG76117.1| histidyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
          Length = 424

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/422 (14%), Positives = 125/422 (29%), Gaps = 23/422 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++  +  G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPAETALWQRIENSLKQVLSGYGYNEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF---RDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y   +       + R R      
Sbjct: 70  FDDRNGDSLTLRPEGTAGCVRAGIEHGILYNQEQRLWYVGPMFRYERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + ++           + +G      R     +     H+
Sbjct: 130 CEVFGLQGPDIDAELILMTARWWRILGIADHVKLELNSIGSLDARARYREALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK--- 266
             +  D            +D   P      +D   L   ++  +  +  T      +   
Sbjct: 190 DQLDEDCLRRMYTNPLRVLDTKNPQIQVLLNDAPVLTDYLDDESRAHFETLGELLTQSGI 249

Query: 267 ---LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGA 321
              +   L        R +        G + ++     + G       H      + +G 
Sbjct: 250 PYTVNPRLVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDGMVEQLGGHATPAVGFAMGL 309

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R+V  V   + D K     D+      +   I           EK+   L ++     +
Sbjct: 310 ERLVLLVQSVNPDFKAQSGVDAYLISSGAGTQI-----AAMQLAEKLRDALPQLKLMTNY 364

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              G     QFA AD  G  + +++G   V+  +V +K+   G ++ ++  +V +  +  
Sbjct: 365 --GGGNFKKQFARADKWGARVALVLGENEVAAGQVVVKNLSNGEQDTLAQADVASRLATL 422

Query: 442 FS 443
             
Sbjct: 423 LD 424


>gi|15609494|ref|NP_216873.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis H37Rv]
 gi|15841869|ref|NP_336906.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|31793534|ref|NP_856027.1| glycyl-tRNA synthetase [Mycobacterium bovis AF2122/97]
 gi|121638236|ref|YP_978460.1| glycyl-tRNA synthetase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662189|ref|YP_001283712.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148823560|ref|YP_001288314.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis F11]
 gi|167968764|ref|ZP_02551041.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|215412102|ref|ZP_03420866.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|215427732|ref|ZP_03425651.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis T92]
 gi|215431296|ref|ZP_03429215.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|218754085|ref|ZP_03532881.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis GM 1503]
 gi|219558346|ref|ZP_03537422.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis T17]
 gi|224990730|ref|YP_002645417.1| glycyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798565|ref|YP_003031566.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis KZN 1435]
 gi|254232499|ref|ZP_04925826.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis C]
 gi|254365134|ref|ZP_04981180.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis str.
           Haarlem]
 gi|260187360|ref|ZP_05764834.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A]
 gi|289443878|ref|ZP_06433622.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289447999|ref|ZP_06437743.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis CPHL_A]
 gi|289553853|ref|ZP_06443063.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis KZN 605]
 gi|289570499|ref|ZP_06450726.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis T17]
 gi|289575051|ref|ZP_06455278.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis K85]
 gi|289746135|ref|ZP_06505513.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289750956|ref|ZP_06510334.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis T92]
 gi|289754462|ref|ZP_06513840.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289762523|ref|ZP_06521901.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis GM 1503]
 gi|294994539|ref|ZP_06800230.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis 210]
 gi|297731950|ref|ZP_06961068.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis KZN R506]
 gi|298525839|ref|ZP_07013248.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|306780395|ref|ZP_07418732.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu002]
 gi|306808676|ref|ZP_07445344.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu007]
 gi|306968505|ref|ZP_07481166.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu009]
 gi|306972734|ref|ZP_07485395.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu010]
 gi|308232112|ref|ZP_07414959.2| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu001]
 gi|308372212|ref|ZP_07427828.2| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu004]
 gi|308380344|ref|ZP_07489609.2| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu011]
 gi|54039669|sp|P67033|SYG_MYCBO RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|54042029|sp|P67032|SYG_MYCTU RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|2078043|emb|CAB08466.1| PROBABLE GLYCYL-tRNA SYNTHETASE GLYS (GLYCINE--tRNA LIGASE) (GLYRS)
           [Mycobacterium tuberculosis H37Rv]
 gi|13882135|gb|AAK46720.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|31619127|emb|CAD97239.1| PROBABLE GLYCYL-tRNA SYNTHETASE GLYS (GLYCINE--tRNA LIGASE) (GLYRS)
           [Mycobacterium bovis AF2122/97]
 gi|121493884|emb|CAL72359.1| Probable glycyl-tRNA synthetase glyS [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124601558|gb|EAY60568.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis C]
 gi|134150648|gb|EBA42693.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506341|gb|ABQ74150.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148722087|gb|ABR06712.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis F11]
 gi|224773843|dbj|BAH26649.1| glycyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320068|gb|ACT24671.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis KZN 1435]
 gi|289416797|gb|EFD14037.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289420957|gb|EFD18158.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis CPHL_A]
 gi|289438485|gb|EFD20978.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis KZN 605]
 gi|289539482|gb|EFD44060.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis K85]
 gi|289544253|gb|EFD47901.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis T17]
 gi|289686663|gb|EFD54151.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289691543|gb|EFD58972.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis T92]
 gi|289695049|gb|EFD62478.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289710029|gb|EFD74045.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis GM 1503]
 gi|298495633|gb|EFI30927.1| glycyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|308214941|gb|EFO74340.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu001]
 gi|308326717|gb|EFP15568.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu002]
 gi|308333991|gb|EFP22842.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu004]
 gi|308344939|gb|EFP33790.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu007]
 gi|308353870|gb|EFP42721.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu009]
 gi|308357815|gb|EFP46666.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu010]
 gi|308361761|gb|EFP50612.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis SUMu011]
 gi|326903973|gb|EGE50906.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis W-148]
 gi|328458333|gb|AEB03756.1| glycyl-tRNA synthetase glyS [Mycobacterium tuberculosis KZN 4207]
          Length = 463

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/433 (13%), Positives = 133/433 (30%), Gaps = 36/433 (8%)

Query: 40  YSWLPLGQKALDNVNA-IIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEM---- 93
           + + PLG +  +N+     R     R   + +    +   ++WV SG  D +   +    
Sbjct: 36  WDYGPLGVELKENIKRQWWRSVVTGRDDVVGIDSSIILPREVWVASGHVDVFHDPLVESL 95

Query: 94  ----LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT----FYQIQLKFRDELRP 145
                  AD   +A      H            ++     +T    F  +   +   +  
Sbjct: 96  ITHKRYRADHLIEAYEAKHGHPPPNGLADIRDPETGEPGQWTQPREFNMMLKTYLGPIET 155

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
             G+   R    +  +        +        +  +    R  +        +      
Sbjct: 156 EEGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQIGKSFRNEITPGNFIFRTREFEQM 215

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               F+  A   E   +   + + + I       +++       ++ +     T D+  +
Sbjct: 216 EMEFFVEPATAKEWHQYWIDNRLQWYI-DLGIRRENLRLWEHPKDKLSHYSDRTVDIEYK 274

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             F   P  +     G+     F   T  ++S    + +   +   +   +     G  R
Sbjct: 275 FGFMGNPWGELE---GVANRTDFDLSTHARHSGVDLSFYDQINDVRYTPYVIEPAAGLTR 331

Query: 324 VVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              A +  ++                       +AP K +++ +  H          + A
Sbjct: 332 SFMAFLIDAYTEDEAPNTKGGMDKRTVLRLDPRLAPVKAAVLPLSRH-ADLSPKARDLGA 390

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K   ++ +DD G  IG ++   D +G P  V V    + D+ V ++ R    ++ ++
Sbjct: 391 ELRKCW-NIDFDDAGA-IGRRYRRQDEVGTPFCVTVDFDSLQDNAVTVRERDAMTQDRVA 448

Query: 431 LEEVINYASHRFS 443
           +  V +Y + R  
Sbjct: 449 MSSVADYLAVRLK 461


>gi|304373198|ref|YP_003856407.1| Glycyl tRNA synthetase [Mycoplasma hyorhinis HUB-1]
 gi|304309389|gb|ADM21869.1| Glycyl tRNA synthetase [Mycoplasma hyorhinis HUB-1]
          Length = 458

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/455 (11%), Positives = 128/455 (28%), Gaps = 42/455 (9%)

Query: 20  IASHKLMLRTGMIH--QHSKGI---YSWLPLGQKALDNVNAIIREEQNRTGAIE--MSVP 72
           + +H L     +    +   G+   + + PLG     N+  +  +           +   
Sbjct: 10  LINH-LKQFGFVFQGSEIYGGLANTWDYGPLGVLLKKNIQDLWWDYFITKIHNNFAIDSK 68

Query: 73  TLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            L + ++W  SG   ++     E      R     ++      +  + F           
Sbjct: 69  ILLNPNVWQASGHTSNFNDLLIENKVNKKRYRVDHLFEEHFPNLNFNDFSQDKILELLKE 128

Query: 130 FTFYQIQLKFRDELRPRFGVMRSRE---------------FLMKDAYSFDLTPEGSKHSY 174
                     R E   +F +M   +                  +  +      + S    
Sbjct: 129 KVLKYDNSATRWEEIKQFNLMFETQQGVVEDKKSKIFLRPETAQGIFINFKNIQRSMRLK 188

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
               +  +    R  +        +          F       +          DF    
Sbjct: 189 LPFGIGQIGKSFRNEITPGNFIFRTREFEQMELEIFCHPEQANQIFDDYLNKIQDFLFNE 248

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
              + D +   +   E+      ATSD+    LF            G+     F      
Sbjct: 249 LKINKDLVRVRHHKQEELAHYSLATSDIEFLFLF------GWGELIGLANRSDFDLKAHS 302

Query: 295 S-LPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS-------VA 345
           +       +      +  +  +    +G  R++ AV+ + +  + +   +          
Sbjct: 303 AASGEKIDYLDPFTNQKFFPYIIEPSMGVDRLLLAVLTNFYKEEKLEENEEKRSLLALPY 362

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
                 + I    +       +IY  L K      +D+    IG ++ + D +G    + 
Sbjct: 363 SLSPFKVAILPLVKKLSPKALEIYNLLLKNSISATFDE-NNSIGKRYRIQDAIGTYFSIT 421

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           V  + + D+ + I+ R +  +  +++++++N+   
Sbjct: 422 VDYQSLEDNTITIRERDSMKQSRIAIDQLLNFLEK 456


>gi|261212140|ref|ZP_05926426.1| histidyl-tRNA synthetase [Vibrio sp. RC341]
 gi|260838748|gb|EEX65399.1| histidyl-tRNA synthetase [Vibrio sp. RC341]
          Length = 422

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/411 (15%), Positives = 119/411 (28%), Gaps = 16/411 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V  +++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFL 156
             ++   P            +   Y      +Y +   FR E       R       E  
Sbjct: 75  GDSLTLRPEGTAGCVRSGIENGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQCGVEVF 133

Query: 157 MKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             D    D           +            + +G         S  I     ++ ++ 
Sbjct: 134 GLDGPDVDAELIMMTARLWRELGIAEHVRLELNSIGSLEARANYRSALIEYLEQYQNVLD 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSLP 272
            D            +D   P       D   L+  ++  +   +A   ++ +    +   
Sbjct: 194 EDCKRRMYTNPLRVLDSKNPDVQAILGDAPQLSDYLDAESKQHFAGLCELLDAAGIEYTV 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             + V         +F      SL    T  G  G  +   +   G      V   +   
Sbjct: 254 NQRLVRGLDYYNRTVFE-WITESLGSQGTVCG--GGRYDGLVEQLGGKPTPAVGFAMGLE 310

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGS 390
                +    +    +   + +    +    A  K+  +L +   G  V     G     
Sbjct: 311 RLVLMMETLGNTEVRRSVDVYMVTAGEGTMMAGMKLAEQLREQVPGLRVMTHFGGGNFKK 370

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           QF  AD +G  + +++G   V+   V +K    G +  ++  EV    +H 
Sbjct: 371 QFKRADKVGAAIALVLGEDEVAAQTVVVKDLAGGEQSTVAQAEVAQLLAHL 421


>gi|59711237|ref|YP_204013.1| histidyl-tRNA synthetase [Vibrio fischeri ES114]
 gi|197336212|ref|YP_002155387.1| histidyl-tRNA synthetase [Vibrio fischeri MJ11]
 gi|75507079|sp|Q5E771|SYH_VIBF1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229470703|sp|B5FAX3|SYH_VIBFM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|59479338|gb|AAW85125.1| histidyl tRNA synthetase [Vibrio fischeri ES114]
 gi|197317702|gb|ACH67149.1| histidyl-tRNA synthetase [Vibrio fischeri MJ11]
          Length = 422

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/417 (13%), Positives = 113/417 (27%), Gaps = 26/417 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V   ++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKVEGSVKRVISAYGYNEVRMPIVEQTHLFKRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFL 156
             ++   P            +   Y      +Y +   FR E       R       E  
Sbjct: 75  GDSLTLRPEGTAGCVRAGIENGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQVGVEVF 133

Query: 157 MKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             +    D           +            + +G         +  +     H  ++ 
Sbjct: 134 GLNGPDVDAELIMMTARLWRELGIDQHVRLELNSIGSLEARANYRTALVAFLEQHLDVLD 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDSLP 272
            D            +D   P       D   L+  ++    A ++   ++ +        
Sbjct: 194 EDCKRRMHTNPMRVLDTKNPDVQAILGDAPKLSEYLDDDSKAHFSGLCELLDAAGIQYQV 253

Query: 273 ENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             + V         +F       G + ++     + G   +       + G         
Sbjct: 254 NERLVRGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLVEQLGGKTTPAVGFAMGLERLV 313

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMG 385
           ++  + +   +     V         +         A  K+   L +   G  V     G
Sbjct: 314 LLMETLELTDVRRSVDVYMVTAGEGTLM--------AGMKLAESLREQVPGLRVMCHFGG 365

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
                QF  AD  G  + +I+G   V++  V +K    G +  +   +V    +   
Sbjct: 366 GNFKKQFKRADNAGAAVALILGETEVAEQTVNVKDLRNGEQVTLPQSDVFTKLAELI 422


>gi|239904666|ref|YP_002951404.1| histidyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
 gi|259511945|sp|C4XT36|SYH_DESMR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|239794529|dbj|BAH73518.1| histidyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
          Length = 421

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 122/429 (28%), Gaps = 35/429 (8%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSY 89
           I +  KG     P        +    R+  +R G  E+ VP L+  +L+  S     D  
Sbjct: 4   IQKI-KGFADLFPPDSTVFSFIEETARQVFSRYGYKELRVPVLERTELFCRSIGEETDVV 62

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            KEM    DR  +++   P     +        ++   L   ++     FR E   +   
Sbjct: 63  QKEMYTFPDRKGRSLTLRPEATAGVMRALVEDGRASEGL-AKYFAYGPMFRYERPQKG-- 119

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL----------GLKSIPMRAES 199
            R R+F   D  +              M   YLR                    P+  ++
Sbjct: 120 -RMRQFHQIDVEAVGSPDALLDAEVLLMLDQYLRALGLKNLVIELNSLGCKACRPIFLDT 178

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAA 258
                   H+  +  D    ++      +D  +P       D   + + +       +AA
Sbjct: 179 LREFLKGMHKEQLCEDCMRRKLSNPLRVLDCKVPQCKEFTADAPKITDHLCPDCADHFAA 238

Query: 259 TSDVHN-----EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
              V +       L   L        R          G++ S+     + G         
Sbjct: 239 VRRVLDGAGLAYTLNPRLVRGLDYYVRTTFEIVSGDIGSQSSVAGGGRYDGLVHSIGGPD 298

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +   G        A++                        +   D +  +    +   L 
Sbjct: 299 VPGVGFACGMERLALLIDKKAE------------PAPDFALVVLDAIGLERGLLLAQELR 346

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G         +   SQ   AD  G    +++GS  ++   V +K+   G +E +S + 
Sbjct: 347 AAGFSGEAPYAAKSAKSQMRAADKSGAAFCLVLGSDELAAGTVVVKNMRAGGQETVSQDI 406

Query: 434 VINYASHRF 442
           +  +   R 
Sbjct: 407 LPAHLRARL 415


>gi|15791150|ref|NP_280974.1| glycyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|169236906|ref|YP_001690106.1| glycyl-tRNA synthetase [Halobacterium salinarum R1]
 gi|10581762|gb|AAG20454.1| glycine-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|167727972|emb|CAP14760.1| glycine--tRNA ligase [Halobacterium salinarum R1]
          Length = 576

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 84/291 (28%), Gaps = 14/291 (4%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +    D+     +         Y         +      E   +     ++     +
Sbjct: 279 QWFERVGVDMDRFRFRQHLPGELAHYASDCWDAEGEVDGDWVELEGVASRTDYDLSKHDE 338

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             +   F      D P   E    D    ++ +  ++       +D              
Sbjct: 339 HAD-DSFTVFQAYDEPKTVERASVD--PEMSYLGPEFGGAAGDVADALAALAARDRAAFD 395

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                    G  +   T+ +    A  +   G+     +     G  R V   +  S++ 
Sbjct: 396 GDEVTVDVDGEAYTVPTERTGFEVAE-ETESGRHIIPHVVEPAFGIGRAVYTALAHSYEA 454

Query: 336 KGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
             +          P  VAP  + +  +   D    +   +I A L   G  V +DD G  
Sbjct: 455 DEVDGEPRDVLRLPAEVAPTTVGVFPLMDKD-GLGERAREIAAELRAAGLAVTYDDSG-N 512

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           IG ++   D +G P  V V  + + +  V ++ R T  +  + + EV    
Sbjct: 513 IGRRYRRQDEVGTPYCVTVDYEALEEGAVTLRDRDTTTQVRVPIAEVAETL 563



 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 24  KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQS 76
           +L  R G   Q       + G Y++ P G     N+    R+    R G +E+  PT+  
Sbjct: 7   ELARRRGFFFQASEAYGGAAGFYTYGPEGAALKRNIEDAWRDRFVTREGNMEIDSPTVTP 66

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKA 103
             ++  SG  D +   ++   D  +  
Sbjct: 67  EPVFQASGHLDDFDDMLVECPDCGESH 93


>gi|325283748|ref|YP_004256289.1| glycyl-tRNA synthetase [Deinococcus proteolyticus MRP]
 gi|324315557|gb|ADY26672.1| glycyl-tRNA synthetase [Deinococcus proteolyticus MRP]
          Length = 506

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 72/496 (14%), Positives = 133/496 (26%), Gaps = 84/496 (16%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G I Q S      +G Y + PLG +  +N+           R     +    +     
Sbjct: 15  RRGFIFQSSEIYGGLQGFYDYGPLGVELKNNIKNAWWRANVHERDDMEGLDASIIMHRLA 74

Query: 80  WVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
              SG   ++   M+         R D  +               +              
Sbjct: 75  LRHSGHEATFNDPMVDNKKTKKRYRLDHLIKDQKADVLAKVAAGVNEAPENIAAVSARLM 134

Query: 135 IQLKFRDELRPRFGVM-----------RSREFLMKDAYSFDL----------TPEGSKHS 173
                  EL    GV              R F M    S              PE ++  
Sbjct: 135 ENPARAAELLVEAGVRDAFSGEVGEWTEPRPFNMMFKTSIGPVADEDSFGYLRPETAQGI 194

Query: 174 YNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS-------- 224
           +            R     +   +A    I        +   +  E + FC+        
Sbjct: 195 FVNFKNVVDSTSRRLPFGIAQIGKAFRNEITPRNFVFRVREMEQMEIEFFCTPGTDEEWH 254

Query: 225 -KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                      E         +   V +    + +         F +L  ++     GI 
Sbjct: 255 AHWLEKRLTWWEEQGVPREKIIVEDVPKDDLAHYSKRTYDLMYDFPTLGHDE---IEGIA 311

Query: 284 VGHIFYFG--TKYSLPMSATFK---------------GADGKDHYVQMGSYGIGAMRVVA 326
               F  G  TK    +  T +                   K     +     G  R + 
Sbjct: 312 NRTDFDLGSHTKGQEELGLTAQVMENSDSVAKLTIPHPETNKPVVPFVIEPSAGVDRALL 371

Query: 327 A---------VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           A          +E+ ++   +     +AP K+++I +  +     D   +I A L K+G 
Sbjct: 372 AVLSEAYCKETLENGNERTVLKLKPHLAPIKVAVIPLARNKPELVDLARRIKADLQKLGL 431

Query: 378 -DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV---SD------SKVEIKHRLTGIRE 427
             +  +D G  IG  +   D +G P  V V         +        V +++R T  +E
Sbjct: 432 GRILLEDSG-NIGKAYRRHDEVGTPYCVTVDFDTAGLGENVDAALKGTVTVRNRDTLEQE 490

Query: 428 DMSLEEVINYASHRFS 443
            +++ ++  +   +  
Sbjct: 491 RVAIADLAAWLQAKLR 506


>gi|332140450|ref|YP_004426188.1| histidyl-tRNA synthetase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|332141963|ref|YP_004427701.1| histidyl-tRNA synthetase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|229558638|sp|B4RV88|SYH_ALTMD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|327550472|gb|AEA97190.1| histidyl-tRNA synthetase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551985|gb|AEA98703.1| histidyl-tRNA synthetase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 427

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/414 (13%), Positives = 117/414 (28%), Gaps = 26/414 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYG 107
              V +++R+     G  E+  P ++S DL+  S G   D   KEM    DRN  ++   
Sbjct: 22  WQKVESVLRQVVASYGYQEIRTPIVESTDLFKRSIGEVTDIVEKEMYTFEDRNGDSLTLR 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT- 166
           P            H   Y       + +   FR E   +    +  +F ++         
Sbjct: 82  PEGTASCVRAGNEHGLLYNQ-QQRLWYMGPMFRHERPQKGRYRQFHQFGVETYGMDGPDI 140

Query: 167 ------------PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                              + K+ ++ L            + A        L  + +   
Sbjct: 141 DLEVILLSARFWKSFGIEQHVKLQINTLGSNEARAAYRDTLVAFLKERADQLDEDSLRRL 200

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +T   +V  SK+       ++     D +   S     T     T      ++   L   
Sbjct: 201 ETNPLRVLDSKNPDVQAAIADAPALIDHLDDESKAHFDTLCARLTQAGIEFEINPRLVRG 260

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                R +        G + ++     + G   +       + G        A+      
Sbjct: 261 LDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVEQLGGKATPAVGF-------AMGIERLV 313

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGSQF 392
                  +       + + + A     +    ++   L        +     G     Q 
Sbjct: 314 LLLTTLTEEGQDTSFADVYVTAMGDDAQPYAIEVSEALRNALPNIRIMMHCGGGNFKKQL 373

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHRFSNN 445
             AD  G  L +++GS  +   +V +K  R    +  +S + + +  +   S  
Sbjct: 374 KRADKTGARLALLLGSDEMQSREVGVKPLRDGQEQVTVSFDTLADKVAEMLSAK 427


>gi|332158548|ref|YP_004423827.1| histidyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331034011|gb|AEC51823.1| histidyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 433

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 66/441 (14%), Positives = 123/441 (27%), Gaps = 40/441 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           MI +  KG   +LP        V   IRE     G  E+  P ++   L+   SG  +  
Sbjct: 1   MIERV-KGTRDFLPEEMIKRRWVFERIREVFEAYGFKEVLTPVMEYTKLFQLRSG--EEI 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            K++    D+  + +   P     +  ++ +  ++       +Y   +   +E +     
Sbjct: 58  VKQLYAFKDKGGRDVSLRPDMTSSVARLYVNSFQNAPKPIKWYYIANMFRYEEPQSG--- 114

Query: 150 MRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMR------AESGPI 202
            R REF              +          SYL    R    +I  R      A+   +
Sbjct: 115 -RYREFWQAGVELIGSDKVEADAEVIALFVESYLATGLRDFTVNIGNRILLDEFAKMLGV 173

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS-- 260
             ++    I+      TQ    K   DF +     +    +           P A     
Sbjct: 174 RDNIGLMRIIDKRDKLTQEEFIKALKDFGLKDNKINKVLELINIKGKPDDVLPLAEELFN 233

Query: 261 -----------DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
                          E L             GI  G  +Y G  +               
Sbjct: 234 SGKSMEEISRLYKLTELLEWYGVSEWIRIDLGIARGFDYYTGIVFEAIAPNELGIGSIGG 293

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI----SLINIKAHDQVCRDAC 365
                    +   R   A   +    + I   +             + +    +  R   
Sbjct: 294 GGRYDNLIEVFGGRPTPATGFAIGIERLIPILEWKKLIPKLRVEPDVFVVPITEEVRRIA 353

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHR 421
             I  RL +       +      G +   A    + +G  + +IVG K V    V ++  
Sbjct: 354 IDITTRLRRARIKTELELT----GRKLRKALDYANRIGVKVTIIVGKKDVERGVVTVRDM 409

Query: 422 LTGIREDMSLEEVINYASHRF 442
            TG + ++++++V        
Sbjct: 410 ETGEQSEVNIQDVEEKVREII 430


>gi|160932389|ref|ZP_02079779.1| hypothetical protein CLOLEP_01224 [Clostridium leptum DSM 753]
 gi|156868348|gb|EDO61720.1| hypothetical protein CLOLEP_01224 [Clostridium leptum DSM 753]
          Length = 442

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 123/412 (29%), Gaps = 32/412 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V   +R   +  G  E+  P  +  +L+  S     D   KEM    D+  +++   
Sbjct: 31  WQVVEDAMRRICSAYGFKEIRTPVFEHTELFQRSVGETTDVVQKEMYTFQDKGGRSITLR 90

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P            H      LP   Y     +R E        R REF       F    
Sbjct: 91  PEGTAGAVRAMVEHGLYNDALPIKAYYFTSCYRYEKPQAG---RLREFHQFGVEVFGAGA 147

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCSK 225
             +      +      +F  LG+K++ +   S   P      H+ +     G     C  
Sbjct: 148 PSADAEVICL---AKSVFDVLGVKNLSLEINSIGCPKCRAEYHKALKEYFQGYQDQLCET 204

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTA---PYAATSDVHNEKLFDSLPENKR------ 276
                               + I E               H E +   L           
Sbjct: 205 CLGRLNRNPMRILDCKSPVCSKIAEGAPVMLDYLCGECREHFEGVKTCLDTMGIAYTVNP 264

Query: 277 VSARGIEV--GHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              RG++     +F F     G + ++     + G   +     M S G G       ++
Sbjct: 265 TIVRGLDYYTKTVFEFVSTGIGAQGTVCGGGRYDGLVEEIGGPSMPSLGFGLGLERLMLV 324

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            +  D                 + + +     +    ++   +     +   D +G  + 
Sbjct: 325 LAQPDSALAAVTP-----PTCDLYVASLGDKAKAQAFRLAELVRTTSLNAECDLVGRSLK 379

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL-EEVINYASH 440
           +Q   AD LG    +++G   + + K ++K+  TG ++++SL E  ++  + 
Sbjct: 380 AQMKYADKLGAKFSLVLGDSELEEQKAKVKNMATGEQKEISLGESFVDEFTQ 431


>gi|313206863|ref|YP_004046040.1| glycyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|312446179|gb|ADQ82534.1| glycyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|325335699|gb|ADZ11973.1| Glycyl-tRNA synthetase (class II) [Riemerella anatipestifer RA-GD]
          Length = 513

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 74/512 (14%), Positives = 143/512 (27%), Gaps = 103/512 (20%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM--S 70
           ++ SH      G I   S        +Y +   G +  +N+     +   +     +   
Sbjct: 10  KVVSHAKE--YGFIFPSSEIYDGLSAVYDYGQNGAELKNNIKQYWWKAMTQLNENIVGLD 67

Query: 71  VPTLQSADLWVESGRY-------------------------------DSYGKEMLRLADR 99
              L     W  SG                                 D   KE+ +   R
Sbjct: 68  SAILMHPTTWKASGHVDAFNDPLIDNKDSKKRFRADVLIEDYCAKLEDKAQKEIAKAQKR 127

Query: 100 NDKAMIY-GPTHEEVMTDIFRSHIKS-----YRNLPFTFYQIQLKFRDE---LRPRFGVM 150
                      +       +R   KS      ++L            +E     P  G  
Sbjct: 128 FGADFDEEQFVNTNPRVLEYRERQKSILTRMAKSLDNNDLADVKALIEELEIADPDTGSK 187

Query: 151 RSRE---FLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGL 190
              E   F +        + E +   Y                             ++G 
Sbjct: 188 NWTEVRQFNLMFGTKLGASAENAMELYLRPETAQGIFVNFSNVQKTSRHKLPFGIAQIGK 247

Query: 191 KSIPMRAESGPIGGDLSHEFIVL----------ADTGETQVFCSKDFMDFPIPSENTDFD 240
                      I      E + +          +   E +       +   + +EN  F 
Sbjct: 248 AFRNEIVARQFIFRMREFEQMEMQFFVAPGTELSFYEEWKQKRLNWHLALGLGTENYKFH 307

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L        A YA  +     K      E + + +R            K+S     
Sbjct: 308 DHEKL--------AHYANAAADIEFKFPFGFKELEGIHSRTDFDLTAHE---KFSGRKLQ 356

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAV---------IESSHDGKGIIWPDSVAPFKISL 351
            F    G+ +   +    +G  R+  AV         +E       +  P ++AP K ++
Sbjct: 357 YFDPERGESYVPYVVETSVGLDRMFLAVFSSSLKEEALEDGSTRTVLSLPPALAPVKAAI 416

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +   D    +  EKI+  L     +V +++    IG ++   D +G P  + V    +
Sbjct: 417 LPLVKKD-GLPEFAEKIFNELK-YDFNVIFEEKD-SIGKRYRRQDAIGTPFCITVDHDSL 473

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +D+ V ++ R T  +E +S+E++      + +
Sbjct: 474 NDNTVTLRERDTMKQERVSVEDLRKIIDDKVN 505


>gi|229582573|ref|YP_002840972.1| Glycine--tRNA ligase [Sulfolobus islandicus Y.N.15.51]
 gi|228013289|gb|ACP49050.1| Glycine--tRNA ligase [Sulfolobus islandicus Y.N.15.51]
          Length = 473

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 65/447 (14%), Positives = 123/447 (27%), Gaps = 51/447 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            G   WLP G      +         +       M   T+    ++  SG   ++   ++
Sbjct: 31  SGFIDWLPPGAMLRQKIIDSWINFFIKKIPNVFLMDGSTILPLIVFEASGHLANFTDPVI 90

Query: 95  RL-----ADRNDKAMIYGPT---HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           +        R D  +            +TD+    IK    +      +  +    LRP 
Sbjct: 91  KCPKCSNTYRVDHLLKETNGKLICPRDLTDLKEQEIKQKSLMLELTVGLTDEINAALRPE 150

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM--------RAE 198
                   F M         P                   RL                 +
Sbjct: 151 TAQNIYINF-MNFKAIGLKLPFAIAQIGRSYRNEISPRGSRLREFVQMEIEEFVLPSHLD 209

Query: 199 SGPIGGD--------LSHEFIVLADTGE---------TQVFCSKDFMDFPIPSENTDFDD 241
           S P+              E  +  +  E          ++          + +E     +
Sbjct: 210 SHPLYDSVKEIRLPIFYEEQTIEMELNEAVKKGLVPNVRLAFWIGREWQWLTNELGLPGN 269

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I    +  +  A Y+  +      + D   E    + R      +       S    A 
Sbjct: 270 KIRFRVVPPEERAFYSKGTIDVEVNIEDDWVEIIGNAYRTDYDLTVH------SKHSGA- 322

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------ 355
                       +     G  R+  AV+  ++D         +      +  ++      
Sbjct: 323 --NLSENGMIPHVVEPSFGLDRIAMAVLLLNYDPSPSDRNWPLFRIPYKISPLEVGIASI 380

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
            H     +  EK+   L  +G   F      +I +Q+A AD LG PL V V SK + ++ 
Sbjct: 381 HHSDEYINVAEKVDLTLRSLGYVTFKLFEKGKIEAQYAKADTLGIPLVVTVDSKTLDENT 440

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V I++R T  +  +++ E+     +  
Sbjct: 441 VTIRNRDTKAQIRVNIREIGQAIKNLL 467


>gi|261820574|ref|YP_003258680.1| histidyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
 gi|261604587|gb|ACX87073.1| histidyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
          Length = 424

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 67/427 (15%), Positives = 131/427 (30%), Gaps = 33/427 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++  +  G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPAETALWQRIENSLKQVLSGYGYNEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FDDRNGESLTLRPEGTAGCVRAGIEHGILYNQEQRLWYV-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKH----SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                  F L              + +       H     +     ++     +    F+
Sbjct: 126 HQLGCEVFGLQGPDIDAELILMTARWWRVLGIADHVKLELNSIGSLDARARYREALVAFL 185

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD-- 269
                 +    C +     P+   +T    I +L +     T      S  H E L +  
Sbjct: 186 EQH-KDQLDEDCLRRMYTNPLRVLDTKNPQIQALLNDAPVLTDYLDDESREHFEALGELL 244

Query: 270 -----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGS 316
                       L        R +        G + ++     + G       H      
Sbjct: 245 TQSGIPYTVNPRLVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDGMVEQLGGHATPAVG 304

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           + +G  R+V  V   + D K     D+      +   +           EK+   L ++ 
Sbjct: 305 FAMGLERLVLLVQSVNPDFKAQPSVDAYLISSGTGTQV-----AAMQLAEKLRDALPQLK 359

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               +   G     QFA AD  G  + +++G   V+  +V +K+   G ++ ++  +V +
Sbjct: 360 LMTNY--GGGNFKKQFARADKWGARVALVLGENEVAAGQVVVKNLSNGEQDTLAQADVAS 417

Query: 437 YASHRFS 443
             +    
Sbjct: 418 RLTTLLD 424


>gi|86145595|ref|ZP_01063925.1| histidyl-tRNA synthetase [Vibrio sp. MED222]
 gi|85836566|gb|EAQ54692.1| histidyl-tRNA synthetase [Vibrio sp. MED222]
          Length = 422

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/420 (14%), Positives = 123/420 (29%), Gaps = 32/420 (7%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKEMLRLA 97
           LP        V + ++   +  G  E+ +P ++  +L+      E+   D   KEM    
Sbjct: 15  LPTQSPLWQKVESAVKSVVSAYGYNEVRMPIVEETNLFSRAVGEET---DVVSKEMYTFD 71

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSR 153
           DRN  ++   P            +    R+    +Y +   FR E       R       
Sbjct: 72  DRNGDSLTLRPEGTAGCVRSCIQNSLINRDEQRLWY-MGPMFRHERPQKGRYRQFHQCGV 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           E    D    D           +            + +G +   +   +  +     H  
Sbjct: 131 EVFGLDGPDVDAELIMMTARLWRELGIDKHVRLELNSIGSQEDRVSYRTALVAFLEQHID 190

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFD 269
           ++  D            +D   P       D   L   + E+    +A   ++ +    +
Sbjct: 191 VLDEDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSEYLGEESKQHFAGLCELLDAVGIE 250

Query: 270 SLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                + V         +F       G + ++     + G   +       + G      
Sbjct: 251 YQVNERLVRGLDYYNRTVFEWITDSLGAQGTVCGGGRYDGLVEQLGGKATNAVGFAMGLE 310

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWD 382
              ++  + +   +     V              +    A  ++  +L     G  V   
Sbjct: 311 RLVLMMETLELTEVRRSVDVYMVAAG--------EGTMIAGMQLANQLRDNVEGVRVMNH 362

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             G     QF  AD +G  + +++G   V+D+ V +K  + G ++ +S  EV    +   
Sbjct: 363 FGGGNFKKQFKRADKVGAVVALVLGENEVADNTVVLKDLVGGEQQTVSQTEVAEKVAALI 422


>gi|302389803|ref|YP_003825624.1| YbaK/prolyl-tRNA synthetase associated region [Thermosediminibacter
           oceani DSM 16646]
 gi|302200431|gb|ADL08001.1| YbaK/prolyl-tRNA synthetase associated region [Thermosediminibacter
           oceani DSM 16646]
          Length = 489

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 16/184 (8%)

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +D+      D  P   +   +G         G + +     + +G   +   + + +  +
Sbjct: 315 ADIKETSEGDPCPACAKPLKKGS--------GIEVAEWKQISSEGKKMEAGALFLENLIL 366

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                  A+ E   D  G+IWPD +AP+K+ +I +   D+   D   K+Y  L+K+    
Sbjct: 367 -------AIAEKHCDDSGLIWPDFIAPYKVVVIPVNTKDERLLDRSIKVYEELNKI-MPT 418

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD  +  G +F  A+LLGFP+++ +G + +     EI  R TG   ++    +     
Sbjct: 419 IIDDRPQSPGVKFKDAELLGFPIRITIGPRSLEKGVAEINLRRTGEMVEVEFGRITEKVC 478

Query: 440 HRFS 443
              +
Sbjct: 479 EMLN 482


>gi|254285478|ref|ZP_04960442.1| histidyl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|150424340|gb|EDN16277.1| histidyl-tRNA synthetase [Vibrio cholerae AM-19226]
          Length = 422

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/411 (14%), Positives = 119/411 (28%), Gaps = 16/411 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V  +++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFL 156
             ++   P            +   Y      +Y +   FR E       R       E  
Sbjct: 75  GDSLTLRPEGTAGCVRSGIENGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQCGVEVF 133

Query: 157 MKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             D    D           +            + +G         +  I     ++ ++ 
Sbjct: 134 GLDGPDVDAELIMMTARLWRELGIAQHVRLELNSIGSLEARANYRTALIDYLEQYQNVLD 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSLP 272
            D            +D   P       D   L+  ++  +   +A   ++ +    +   
Sbjct: 194 EDCKRRMYTNPLRVLDSKNPYVQAILGDAPQLSDYLDAESKQHFAGLCELLDAAGIEYTV 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             + V         +F      SL    T  G  G  +   +   G      V   +   
Sbjct: 254 NQRLVRGLDYYNRTVFE-WITESLGSQGTVCG--GGRYDGLVEQLGGKPTPAVGFAMGLE 310

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGS 390
                +    +    +   + +    +    A  K+  +L +   G  V     G     
Sbjct: 311 RLVLMMETLGNTDVRRSVDVYMVTAGEGTMMAGMKLAEQLREQVPGLRVMTHFGGGNFKK 370

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           QF  AD +G  + +++G   V+   V +K    G +  ++  EV    +H 
Sbjct: 371 QFKRADKVGAAIALVLGEDEVAAQTVVVKDLAGGEQNTVAQAEVAKLLAHL 421


>gi|149040965|gb|EDL94922.1| glutamyl-prolyl-tRNA synthetase, isoform CRA_c [Rattus norvegicus]
          Length = 1460

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 11/172 (6%)

Query: 283  EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWP 341
            E     + G  +S      F+                G   R +  +I    D  G++ P
Sbjct: 1185 EGATSHHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGLTTRTIGVMIMVHGDNMGLVLP 1244

Query: 342  DSVAPFKISLINIKAHD-------QVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFA 393
              VA  ++ +I     +       +     C +   RL         D       G +F 
Sbjct: 1245 PRVASVQVVVIPCGITNTLSEEDREALMAKCNEYRRRLLGADIRARVDLRDNYSPGWKFN 1304

Query: 394  VADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              +L G P+++ VG + +     V ++ R TG +  ++ +E  +       +
Sbjct: 1305 HWELKGVPVRLEVGPRDMKSCQFVAVR-RDTGEKLTIAEKEAESKLKGVLED 1355



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 61/194 (31%), Gaps = 15/194 (7%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
             G Y   P      +++      E  + G      P   S   L  E      +  E+  
Sbjct: 1044 SGCYILRPWSYSIWESIKDFFDAEIKKLGVENCYFPIFVSQGALEKEKNHIADFAPEVAW 1103

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1104 VTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLR 1163

Query: 152  SREFLMKDAYSFDLTP----------EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            +REFL ++ +S   T                +++KM           G K    +   G 
Sbjct: 1164 TREFLWQEGHSAFATFEEAADEGATSHHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGL 1223

Query: 202  IGGDLSHEFIVLAD 215
                +    +V  D
Sbjct: 1224 TTRTIGVMIMVHGD 1237


>gi|290968830|ref|ZP_06560367.1| histidine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781126|gb|EFD93717.1| histidine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 422

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 71/415 (17%), Positives = 131/415 (31%), Gaps = 14/415 (3%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLAD 98
            +LP        + A IR         E+  P  ++ +L++       D   KEM    D
Sbjct: 11  DFLPEQTAEWQMLEAKIRRICALYEFGEIRTPLFENTELFLRGIGETTDVVTKEMYTFVD 70

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           R  ++M   P +   +   F  H          FY +   FR +        +  +F ++
Sbjct: 71  RGGRSMTLRPENTASVVRSFLEHKLYGEQKVHKFYYMGPMFRHDRPQAGRYRQFNQFGVE 130

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
              S D   +    S        L +   +   +        PI      +F   AD  E
Sbjct: 131 AIGSKDPAVDAEIISLAFQLFRELGLNDLVLHLNSVGCPSCRPIYRQKLLDF--FADKKE 188

Query: 219 T-QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR- 276
           +    C +     P+   +   D    +N  V   T     +   H +++   L      
Sbjct: 189 SLCDDCRERLEKNPLRVLDCKADGEKMMNMGVPLITEHLCESCQSHFQQVQQYLQAVGIP 248

Query: 277 -----VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   RG++      F   Y+   + +     G+   +     G     +  AV   
Sbjct: 249 FVKDPRLVRGLDYYTNTAFEIMYAPLGAQSTVCGGGRYDGLIAEVGGPSTPGIGFAVGME 308

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                         P  +  I I A  +  R     +   L         D MG  +  Q
Sbjct: 309 RLLLTLKEQGLLTVPVGVPPIFIVALGEAARAKAFVLQQALRARQIAAEIDLMGRSMKGQ 368

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              A+  G    VI+G + ++  +V++++ +T  +  + + E++ Y     SN R
Sbjct: 369 MKAANKAGAWYTVIIGEEELARQEVQVRNMMTKEQIAVPMNELVTYME---SNRR 420


>gi|257059086|ref|YP_003136974.1| histidyl-tRNA synthetase [Cyanothece sp. PCC 8802]
 gi|256589252|gb|ACV00139.1| histidyl-tRNA synthetase [Cyanothece sp. PCC 8802]
          Length = 429

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/428 (14%), Positives = 119/428 (27%), Gaps = 26/428 (6%)

Query: 37  KGIYSWLP--LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
            G    LP  +G      V  I  E  +R    E+  P  +   L+        D  GKE
Sbjct: 8   PGTRDILPEEIGY--WQYVETITTEILSRAMYQEIRAPIFEQTSLFERGIGEATDVVGKE 65

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    DR D+++   P     +   +  +           +     FR E        R 
Sbjct: 66  MYTFKDRGDRSVTLRPEGTAGVVRAYLQNNLYATGGVQRLWYQGPMFRYERPQAG---RQ 122

Query: 153 REFLMKDAYSF-DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           R+F            P               ++  +     +    +          E +
Sbjct: 123 RQFHQIGLELLGSGDPRADVEVIALATDILKKLGLQSLKLDLNSVGDRND--RQRYREAL 180

Query: 212 VLA---DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           V        E            P+   ++       +N             S  H +++ 
Sbjct: 181 VNYFLPYKNELDPDSQDRLERNPLRILDSKNQRTKEINQNAPSILQYLGDQSKKHFDQVQ 240

Query: 269 DSLPENKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
             L +            RG++      F  + S  + A      G  +   +   G G  
Sbjct: 241 QLLTDLNISYQLNPCLVRGLDYYTHTAFEIQ-SDDLGAQATVCGGGRYDGLVAELG-GPD 298

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                          ++      P  +  I I +  +        +  +L   G  V  D
Sbjct: 299 TPAVGWAIGMERLIILLKQRQTVPHCVPDIYIVSKGEQAEAQALILAQKLRFEGLTVELD 358

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA---S 439
             G   G QF  AD  G    +++G +  +   +++K   T  +E +   ++++      
Sbjct: 359 LSGSAFGKQFKRADRSGAIACIVLGDEEAATQTLQLKWLATKQQETLDQTQLVSEIGELK 418

Query: 440 HRFSNNRP 447
            + + ++ 
Sbjct: 419 AQLARHKQ 426


>gi|21228163|ref|NP_634085.1| histidyl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|32130120|sp|Q8PVB0|SYH_METMA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|20906611|gb|AAM31757.1| Histidyl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 411

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 131/412 (31%), Gaps = 20/412 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   +LP        V +++R      G  E+  PT +  DL+  +SG  +    E+   
Sbjct: 8   GTRDFLPADTARRRYVESVMRNVVLNWGYSEIITPTFEHLDLFTLKSG--EGIIGELYNF 65

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + M   P     +   + + ++ +   P   +  +  FR E   +    R REF 
Sbjct: 66  TDKGGREMTLRPELTAPVMRFYVNELQPFPK-PLKLFYFENCFRYERPQKG---RFREFW 121

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF----IV 212
                        S      +  + L+     G   +   A    +   L  E     + 
Sbjct: 122 QFGVELIGSGKSDSDAEVIALASALLKAVGIKGDMKLGNLAVIRTLLKGLEPEIVSNVMR 181

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLN--SIVEQWTAPYAATSDVHNEKLFDS 270
           L D  E     +            +D   +I L    I+ +         ++ + +    
Sbjct: 182 LVDKKEYAGLEALLDEIGAEEQLKSDLFRLIHLQGRYILPEVKGIVGNIPELVSFEKTLK 241

Query: 271 LPENKRVSA---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           L +   V      GI  G  +Y G  + +                       G   V + 
Sbjct: 242 LLDAYGVDYSLDFGIARGLDYYTGMVFEVYAEGLGAQKQVCGGGSYQLIQLFGGGDVPST 301

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                 D    I P      K   + + +      +   K+   L      V  D M   
Sbjct: 302 GFGIGFDRIMEICPLVPPAQKS--LVVVSKPDTHLE-AVKVATELRNY-LPVQIDLMERN 357

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             +Q + A+ +     +IVG K +   K+ ++  ++G +E ++LEE+I   S
Sbjct: 358 FKAQLSYANTINADYVIIVGEKELEAGKLTLRDMVSGEQELLTLEEIIEKIS 409


>gi|262402855|ref|ZP_06079416.1| histidyl-tRNA synthetase [Vibrio sp. RC586]
 gi|262351637|gb|EEZ00770.1| histidyl-tRNA synthetase [Vibrio sp. RC586]
          Length = 422

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/405 (14%), Positives = 117/405 (28%), Gaps = 16/405 (3%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               V  +++   +  G  E+ +P ++   L+  + G   D   KEM    DRN  ++  
Sbjct: 21  LWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRNGDSLTL 80

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYS 162
            P            +   Y      +Y +   FR E       R       E    D   
Sbjct: 81  RPEGTAGCVRSGIENGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQCGVEVFGLDGPD 139

Query: 163 FDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            D           +            + +G         S  I     ++ ++  D    
Sbjct: 140 VDAELIMMTARLWRELGIAEHVRLELNSIGSLEARANYRSALIEYLEQYQNVLDEDCKRR 199

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSLPENKRVS 278
                   +D   P       D   L+  ++  +   +A   ++ +    +     + V 
Sbjct: 200 MYTNPLRVLDSKNPDVQAILGDAPQLSDYLDAESKQHFAGLCELLDAAGIEYTVNQRLVR 259

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                   +F      SL    T  G  G  +   +   G      V   +        +
Sbjct: 260 GLDYYNRTVFE-WITESLGSQGTVCG--GGRYDGLVEQLGGKPTPAVGFAMGLERLVLMM 316

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGSQFAVAD 396
               +    +   + +    +    A  K+  +L +   G  V     G     QF  AD
Sbjct: 317 ETLGNTEVRRSVDVYMVTAGEGTMMAGMKLAEQLREQVPGLRVMTHFGGGNFKKQFKRAD 376

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            +G  + +++G   V+   V +K    G +  ++  EV    +H 
Sbjct: 377 KVGAAIALVLGEDEVAAQTVVVKDLAGGEQSTVAQAEVAQLLAHL 421


>gi|258619958|ref|ZP_05714998.1| histidyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|262172169|ref|ZP_06039847.1| histidyl-tRNA synthetase [Vibrio mimicus MB-451]
 gi|258587691|gb|EEW12400.1| histidyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|261893245|gb|EEY39231.1| histidyl-tRNA synthetase [Vibrio mimicus MB-451]
          Length = 422

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/411 (15%), Positives = 119/411 (28%), Gaps = 16/411 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V  +++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFL 156
             ++   P            +   Y      +Y +   FR E       R       E  
Sbjct: 75  GDSLTLRPEGTAGCVRSGIENGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQCGVEVF 133

Query: 157 MKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             D    D           +            + +G         S  I     ++ ++ 
Sbjct: 134 GLDGPDVDAELIMMTARLWRELGISEHVRLELNSIGSLEARANYRSALIEYLEQYQSVLD 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSLP 272
            D            +D   P       D   L+  ++  +   +A   ++ +    +   
Sbjct: 194 EDCKRRMYTNPLRVLDSKNPDVQAILGDAPQLSDYLDAESKQHFAGLCELLDAAGIEYTV 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             + V         +F      SL    T  G  G  +   +   G      V   +   
Sbjct: 254 NQRLVRGLDYYNRTVFE-WITESLGSQGTVCG--GGRYDGLVEQLGGKPTPAVGFAMGLE 310

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGS 390
                +    +    +   + +    +    A  K+  +L +   G  V     G     
Sbjct: 311 RLVLMMETLGNTDVRRSVDVYMVTAGEGTMMAGMKLAEQLREQVPGLRVMTHFGGGNFKK 370

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           QF  AD +G  + +++G   V+   V +K    G +  ++  EV    +H 
Sbjct: 371 QFKRADKVGAAIALVLGEDEVAAQTVVVKDLAGGDQSTVAQAEVAKLLAHL 421


>gi|323348900|gb|EGA83137.1| YER087W-like protein [Saccharomyces cerevisiae Lalvin QA23]
          Length = 484

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 81/303 (26%), Positives = 138/303 (45%), Gaps = 5/303 (1%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           GAIE+S+  + S  LW  + R+++   E+ +L D   K      T EE +TD+ +++I S
Sbjct: 6   GAIEVSLSAISSKALWQATDRWNN--SELFKLKDSKGKQYCLTATCEEDITDLMKNYIAS 63

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           Y+++P T YQ+  K+RDE+RPR G++R REFLMKDAYSF    E +  S+ K+  +Y +I
Sbjct: 64  YKDMPITIYQMTRKYRDEIRPRGGILRGREFLMKDAYSFASNEEDAFASFQKLDDTYNKI 123

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F  L +  +   A+SG IGG+ S EF ++ ++GE  +   K   D      +  + +   
Sbjct: 124 FKDLKIPFVSAWADSGDIGGEFSKEFHLIHESGEDTLMSCKHCGDISTLDMSQSYPEKDG 183

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             S        YA T D H+  +    P++++++                    +     
Sbjct: 184 QYSG--DVDCKYALTKD-HSTLICFYYPKDRQLNWNLALNAMDKDIDLTLRNKPNDHVLQ 240

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              KD+   M S  +  M        +  D     +  +       +  + A +      
Sbjct: 241 VYEKDNEDIMFSKILRVMDCRLNSKSNFPDFPLKKYLKNNFGQISDVSIVDAQENEICGK 300

Query: 365 CEK 367
           CE+
Sbjct: 301 CEE 303



 Score = 77.5 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 107/310 (34%), Gaps = 23/310 (7%)

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
                 +       +   +   +    +    +                + +    +  +
Sbjct: 158 DTLMSCKHCGDISTLDMSQSYPEKDGQYSGDVDCKYALTKDHSTLICFYYPKDRQLNWNL 217

Query: 196 RAESGPIGGDL------SHEFIVLADTGETQVFCSKDF--MDFPIPSENTDFDDIISLNS 247
              +     DL      +   + + +     +  SK    MD  + S++   D  +    
Sbjct: 218 ALNAMDKDIDLTLRNKPNDHVLQVYEKDNEDIMFSKILRVMDCRLNSKSNFPDFPLKKYL 277

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-AD 306
                     +  D    ++     E +    + IEVGHIF  G KYS P++  F    +
Sbjct: 278 KNNFGQISDVSIVDAQENEICGKCEEGRLEPLKSIEVGHIFLLGNKYSKPLNVKFVDKEN 337

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
             + +V MG YGIG  R+V A+ E   D  G  W  ++       I    ++       +
Sbjct: 338 KNETFVHMGCYGIGVSRLVGAIAELGRDSNGFRW-PAIMAPYKVSICTGPNNPENSQRLQ 396

Query: 367 KIYARLS--------KVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            + ++L         +       D   E+  IG++  ++  +G PL VIVGSK   + ++
Sbjct: 397 DVKSKLLNDPTMQNLQNDI---LDQFNEKLGIGARIKLSHAMGIPLCVIVGSKSWPNVEI 453

Query: 417 EIKHRLTGIR 426
           EI+    G +
Sbjct: 454 EIRGIRWGEK 463


>gi|160872440|ref|ZP_02062572.1| histidyl-tRNA synthetase [Rickettsiella grylli]
 gi|159121239|gb|EDP46577.1| histidyl-tRNA synthetase [Rickettsiella grylli]
          Length = 427

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 67/417 (16%), Positives = 120/417 (28%), Gaps = 18/417 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP       NV  ++R   N+ G  E+ +P L+  DL+    G   D   KEM  
Sbjct: 10  GMNDILPAQNFIWQNVEKVLRNLVNQYGYQEIRLPILEKTDLFKRCIGHVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN +++   P            H   Y  +   +Y     + +   + R R      
Sbjct: 70  FIDRNGESLSLRPEGTAGCVRAGVEHGLFYNQIQRWWYLGPMFRHERPQKGRYRQFHQWG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF---HRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + K      ++    + LG        +   I     H 
Sbjct: 130 VEVFGIAQAYIDAELILMTARFWKELKLMHQLHLEINSLGSLEARKAHKESLINYFAQHL 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL--NSIVEQWTAPYAATSDVHNEKL 267
             +  D+           +D   P+  +  +    L      E      +    + N  +
Sbjct: 190 NDLDEDSKRRLQTNPLRILDSKNPALQSLIEKAPQLLDYLDAESQQDFNSLQEILKNADI 249

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             ++   + V         +F          +A      G  +   +   G         
Sbjct: 250 NFTI-NPRLVRGLDYYNKTVFE-WVIVDKQHTAQNTVCAGGRYDYLVEQLGGHPTPAAGF 307

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSKVGCDVFWDDM 384
            I        +    S A     +  I   D   +      + +   L      +  D  
Sbjct: 308 AIGMERLVSLLSPLSSTASHLPDVYFITMGDIAIQKGIILSDYLRENLIT--IRLILDVT 365

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASH 440
            + I +QF  AD  G    +I+G   V  + + IK+      +E +S + VI     
Sbjct: 366 RDAIKTQFKRADKSGARFALILGENEVKSNTLIIKNLKERNPQETISQDHVIQKLRE 422


>gi|14601532|ref|NP_148072.1| glycyl-tRNA synthetase [Aeropyrum pernix K1]
 gi|11387160|sp|Q9YBF8|SYG_AERPE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|5105327|dbj|BAA80640.1| glycyl-tRNA synthetase [Aeropyrum pernix K1]
          Length = 583

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 5/140 (3%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA----PFKISLINIKAHDQVCR 362
           G+     +     G  R V   +E ++         +      P +  ++ +  +D+   
Sbjct: 430 GRRFVPHVVEPSFGTDRNVYVALEYAYREVEGRVVLAFPRDIAPVQAVVLPLVENDEKLV 489

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +    +Y  L + G  V++DD G  IG ++A AD +G P  V +  + + D  V ++ R 
Sbjct: 490 ERARMVYETLVEAGFTVYYDDSG-SIGRRYARADEIGVPAAVTIDYQTLEDGTVTLRDRD 548

Query: 423 TGIREDMSLEEVINYASHRF 442
           T  +  +  +EV++      
Sbjct: 549 TWRQVRIGADEVVDKLRRFI 568



 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 32/109 (29%), Gaps = 3/109 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIRE---EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G Y W PLG      +    R      ++   +E+  P +    +++ SG  + +   +
Sbjct: 30  AGFYDWGPLGHLLKRRIIEKWRRYFVLMHQDHVVEIETPVIGPEKVYIASGHVEHFTDPI 89

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           +R               E +  +     +     +           + E
Sbjct: 90  VRCTSCGRTFRADHLVEEALGINAEGLSVSELDRIIRERGLRCPVCQGE 138


>gi|327440917|dbj|BAK17282.1| glycyl-tRNA synthetase [Solibacillus silvestris StLB046]
          Length = 462

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/442 (12%), Positives = 135/442 (30%), Gaps = 51/442 (11%)

Query: 40  YSWLPLGQKALDNVNA-----IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + + PLG +  +NV        ++E ++  G   +    L +   WV SG   ++   M+
Sbjct: 33  WDYGPLGVELKNNVKKAWWLKFVQESEHNVG---LDAAILMNPKAWVASGHVGNFNDPMI 89

Query: 95  RLADRNDKAMIYGPTHEEVMT----------DIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
                  +        +  +T            F    +    L             ++R
Sbjct: 90  DCKACKARHRADKLIEDASLTKTGKEIIVDGMTFDQMKEKMEELEVACPDCGKIDFTDIR 149

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------RLGL 190
               + ++ + + + + +       +       F +  R                 R  +
Sbjct: 150 QFNLMFKTHQGVTESSSNEIYLRPETAQGIFVNFKNVQRSMRKKTPFGIAQIGKSFRNEI 209

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                   +          F    +  E   +  +   ++ +       +D + L    +
Sbjct: 210 TPGNFTFRTREFEQMELEFFCKPGEDLEWHSYWKEFCKNWLLA--LGMKEDSMRLRDHED 267

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              + Y+  +     +      E   ++ R            ++S            + +
Sbjct: 268 DELSHYSNATTDIEFRFPFGWGELWGIADRTDYDLKQH---MEHSGEDFTYIDPVSNERY 324

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVC 361
                   +GA RV  A +  +++ + +          +  ++APFK +++ +       
Sbjct: 325 VPYCIEPSLGADRVTLAFLCDAYEEEQLEGDDTRTVLRFHPALAPFKAAVLPLSKK---L 381

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            +    ++A L K    V +D+  + IG ++   D +G P  +        D +V ++HR
Sbjct: 382 SEEAGDVWADLRKA-FPVDYDES-QSIGKRYRRQDEIGTPFCITYDFDSKEDGQVTVRHR 439

Query: 422 LTGIREDMSLEEVINYASHRFS 443
            +  +  M + EV  Y      
Sbjct: 440 DSMEQIRMPIAEVKAYIEKHLQ 461


>gi|119355895|ref|YP_910539.1| glycyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
 gi|119353244|gb|ABL64115.1| glycyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
          Length = 489

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 67/479 (13%), Positives = 146/479 (30%), Gaps = 68/479 (14%)

Query: 19  EIASHKLM---LRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           E   HKL+    R G I   S         + + PLG +   N+  +      R     +
Sbjct: 17  EKVMHKLVSLAKRRGFIFPSSEIYEGLSSCFDYGPLGSEMKKNIKDLWWNAMTRR-HQNI 75

Query: 70  ---SVPTLQSADLWVESGRYDSYGKEML----------------------RLADRNDKAM 104
                  + +  +W  SG   S+   M+                      R   ++D A+
Sbjct: 76  VGIDASIMMNPRVWEASGHVASFNDPMIDDKATKRRYRADHLIENHIEKLRRDGKDDTAL 135

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE----LRPRFGVMRSREFLMKDA 160
                +E+  T    +    Y  +     + Q     E     +           L   A
Sbjct: 136 KVQTAYEQASTAADLNRAL-YDIIIAEGIKAQDTGSGEWTEVRQFNLMFQCGMGALADKA 194

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
               L PE ++  +            +     +   +A    I        +V  +  E 
Sbjct: 195 SIVYLRPETAQGIFVNFHNVRESSRMKVPFGIAQIGKAFRNEIVKGNFIFRMVEFEQMEM 254

Query: 220 QVFCSKDFMDFPIPSENTDFDDIIS---------LNSIVEQWTAPYAATSDVHNEKLFDS 270
           Q F           +   +  +  +         L+       A YA  +     +    
Sbjct: 255 QYFVKPGTQAEAFEAWREERFNWYTSALGINRDKLHWYKHDKLAHYADLAYDIKFEFPFG 314

Query: 271 LPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRVVAAV 328
           + E + + +R       F     +     +  +      + +   +     G  R+  A+
Sbjct: 315 IEEIEGIHSR-----TDFDLKQHQEYSGKNMEYIDQLTNERYIPYVVETSAGCDRLFLAL 369

Query: 329 IESSHD--------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +  ++            + +   VAP K +++ +    ++  +   +I   L ++   + 
Sbjct: 370 LSDAYSEDVVDGEPRISLRFSPKVAPVKAAVLPLLKKGEMA-EKAARIADDLRQL-YMIQ 427

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            DD G  IG ++   D +G P  + +  + + +  + I+HR T  +E +S   +  + +
Sbjct: 428 QDDAG-SIGKRYRRQDEIGTPFCLTIDHETLENDTLTIRHRDTASQERISASSIREFLA 485


>gi|323337977|gb|EGA79216.1| YER087W-like protein [Saccharomyces cerevisiae Vin13]
 gi|323355284|gb|EGA87109.1| YER087W-like protein [Saccharomyces cerevisiae VL3]
          Length = 509

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 81/303 (26%), Positives = 138/303 (45%), Gaps = 5/303 (1%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           GAIE+S+  + S  LW  + R+++   E+ +L D   K      T EE +TD+ +++I S
Sbjct: 6   GAIEVSLSAISSKALWQATDRWNN--SELFKLKDSKGKQYCLTATCEEDITDLMKNYIAS 63

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           Y+++P T YQ+  K+RDE+RPR G++R REFLMKDAYSF    E +  S+ K+  +Y +I
Sbjct: 64  YKDMPITIYQMTRKYRDEIRPRGGILRGREFLMKDAYSFASNEEDAFASFQKLDDTYNKI 123

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F  L +  +   A+SG IGG+ S EF ++ ++GE  +   K   D      +  + +   
Sbjct: 124 FKDLKIPFVSAWADSGDIGGEFSKEFHLIHESGEDTLMSCKHCGDISTLDMSQSYPEKDG 183

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             S        YA T D H+  +    P++++++                    +     
Sbjct: 184 QYSG--DVDCKYALTKD-HSTLICFYYPKDRQLNWNLALNAMDKDIDLTLRNKPNDHVLQ 240

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              KD+   M S  +  M        +  D     +  +       +  + A +      
Sbjct: 241 VYEKDNEDIMFSKILRVMDCRLNSKSNFPDFPLKKYLKNNFGQISDVSIVDAQENEICGK 300

Query: 365 CEK 367
           CE+
Sbjct: 301 CEE 303



 Score = 77.1 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 107/310 (34%), Gaps = 23/310 (7%)

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
                 +       +   +   +    +    +                + +    +  +
Sbjct: 158 DTLMSCKHCGDISTLDMSQSYPEKDGQYSGDVDCKYALTKDHSTLICFYYPKDRQLNWNL 217

Query: 196 RAESGPIGGDL------SHEFIVLADTGETQVFCSKDF--MDFPIPSENTDFDDIISLNS 247
              +     DL      +   + + +     +  SK    MD  + S++   D  +    
Sbjct: 218 ALNAMDKDIDLTLRNKPNDHVLQVYEKDNEDIMFSKILRVMDCRLNSKSNFPDFPLKKYL 277

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-AD 306
                     +  D    ++     E +    + IEVGHIF  G KYS P++  F    +
Sbjct: 278 KNNFGQISDVSIVDAQENEICGKCEEGRLEPLKSIEVGHIFLLGNKYSKPLNVKFVDKEN 337

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
             + +V MG YGIG  R+V A+ E   D  G  W  ++       I    ++       +
Sbjct: 338 KNETFVHMGCYGIGVSRLVGAIAELGRDSNGFRW-PAIMAPYKVSICTGPNNPENSQRLQ 396

Query: 367 KIYARLS--------KVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            + ++L         +       D   E+  IG++  ++  +G PL VIVGSK   + ++
Sbjct: 397 DVKSKLLNDPTMQNLQNDI---LDQFNEKLGIGARIKLSHAMGIPLCVIVGSKSWPNVEI 453

Query: 417 EIKHRLTGIR 426
           EI+    G +
Sbjct: 454 EIRGIRWGEK 463


>gi|84387626|ref|ZP_00990643.1| histidyl-tRNA synthetase [Vibrio splendidus 12B01]
 gi|84377471|gb|EAP94337.1| histidyl-tRNA synthetase [Vibrio splendidus 12B01]
          Length = 422

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/420 (14%), Positives = 125/420 (29%), Gaps = 32/420 (7%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKEMLRLA 97
           LP        V + ++   +  G  E+ +P ++  +L+      E+   D   KEM    
Sbjct: 15  LPTQSPLWQKVESAVKSVVSAYGYNEVRMPIVEETNLFSRAVGEET---DVVSKEMYTFD 71

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSR 153
           DRN  ++   P            +    R+    +Y +   FR E       R       
Sbjct: 72  DRNGDSLTLRPEGTAGCVRSCIQNSLINRDEQRLWY-MGPMFRHERPQKGRYRQFHQCGV 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           E    D    D           +            + +G +   +   +  +     H  
Sbjct: 131 EVFGLDGPDVDAELIMMTARLWRELGIDKHVRLELNSIGSQEDRVSYRTALVAFLEQHID 190

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFD 269
           ++  D            +D   P       D   L   + E+    +A   ++ +    +
Sbjct: 191 VLDEDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSEYLGEESKQHFAGLCELLDAVGIE 250

Query: 270 SLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                + V         +F       G + ++     + G   +       + G      
Sbjct: 251 YQVNERLVRGLDYYNRTVFEWITDSLGAQGTVCGGGRYDGLVEQLGGKATNAVGFAMGLE 310

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK--VGCDVFWD 382
              ++  + +   +             + + A  +    A  ++  +L     G  V   
Sbjct: 311 RLVLMMETLELTEVRRS--------VDVYVVAAGEGTMIAGMQLANQLRDTVEGVRVMNH 362

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             G     QF  AD +G  + +++G   V+D+ V +K  + G +E +S  EV    +   
Sbjct: 363 FGGGNFKKQFKRADKVGAVVALVLGENEVADNTVVLKDLVGGEQETVSQTEVAEKVAALI 422


>gi|168704849|ref|ZP_02737126.1| prolyl-tRNA synthetase [Gemmata obscuriglobus UQM 2246]
          Length = 512

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/430 (13%), Positives = 123/430 (28%), Gaps = 62/430 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +   +      TG +    P       L  E    + + KE    
Sbjct: 33  GCMVIKPTGFALWEKMQKALDGLFKSTGHVNAYFPLFIPMSFLAKEEQMAEGFAKE---- 88

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                           V+T             P     +      E              
Sbjct: 89  --------------CAVVTHYRLK------AEPGKPLHVDPAAELEEPLIVRPTS----- 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                          ++Y K   SY  +   +   +  +R E        + EF+     
Sbjct: 124 ----------ETIIWNTYKKWVQSYRDLPLLINQWANVVRWEMRTRLFLRTAEFL--WQE 171

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           G T    +K+  +  +      +         +     P           ++    E   
Sbjct: 172 GHTAHATAKEAEEETLQMVRV-YQKFAEEWMAMPVLVGPKTDGQKFPG-AVYTLCIEAMM 229

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              + ++ G   + G  ++      FK    K+ Y    S+G+ + R++  +I +  D  
Sbjct: 230 QDGKALQAGTSHFLGQNFAKAFDVKFKDQSNKEEYAWATSWGV-STRLIGGLIMTHSDDN 288

Query: 337 GIIWPDSVAPFKISLINIKAHDQV------CRDACEKIYARLSK------VGCDVFWDDM 384
           G++ P  +AP  + ++ +  +D          +        L +          V  D M
Sbjct: 289 GLVVPPRLAPTHVVIVPLGKNDAERGPSIAAAEKLAAELRALPRDDFFGYEPISVKIDTM 348

Query: 385 -GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLEEVINYAS 439
             +Q G ++A  ++ G P++V +G K +      +  R      G +  + L     + S
Sbjct: 349 FDKQPGFRYAEHEVRGVPVRVEIGPKDIEKGACAVARRDVPGKEGKQFGIPLPGAAEHIS 408

Query: 440 HRFSNNRPVL 449
               + +  L
Sbjct: 409 KLLRDIQASL 418


>gi|67903696|ref|XP_682104.1| hypothetical protein AN8835.2 [Aspergillus nidulans FGSC A4]
 gi|40740933|gb|EAA60123.1| hypothetical protein AN8835.2 [Aspergillus nidulans FGSC A4]
          Length = 1309

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 90/273 (32%), Gaps = 12/273 (4%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     +   K+    P+    T  +
Sbjct: 351 FRQHMANEMAHYACDCWDAELYTSYGWIECVGCADRSAYDLNVHKNKTGAPLVVRETRAE 410

Query: 241 DIISLNSIVEQWTAPYAA---TSDVHNEKLFDSLPEN-------KRVSARGIEVGHIFYF 290
            +      +E     +           E   D+L +               IEVG+I   
Sbjct: 411 PLKVEEWQIELDKKKFGPRFKKDGKTVEAAIDALSQELREKLALDLEKTGKIEVGYIITI 470

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             +  +     +   +  +    +G      M  V    E       + +P  +AP K+ 
Sbjct: 471 EKRTRVENVREYT-PNVIEPSFGIGRILYSLMEHVYYYREGDEARGVLSFPPVIAPTKVL 529

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           L+ + ++    R   +++  +L ++G     DD    IG ++A  D LG P  V V  + 
Sbjct: 530 LVPLSSN-PAFRPMVQELTTKLRRLGVSSRVDDSSASIGKRYARNDELGTPFGVTVDFQS 588

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           V D+ + ++ R +  +   S EE++        
Sbjct: 589 VKDNTITLRDRDSTKQVRASQEEILQALKSLVE 621



 Score = 54.0 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G   L+N+    R+        +E+    L   ++   SG  D +   M +
Sbjct: 38 SGLYDYGPPGCAVLNNIVETWRKHFVLEEDMLEVDCTMLTPEEVLKTSGHVDKFADWMCK 97


>gi|77362056|ref|YP_341630.1| histidyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
 gi|123586939|sp|Q3ICZ6|SYH_PSEHT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|76876967|emb|CAI89184.1| histidine tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
          Length = 426

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/420 (15%), Positives = 122/420 (29%), Gaps = 26/420 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP   +    V  I+RE     G  E+  P ++S DL+  S G   D   KEM   ADRN
Sbjct: 15  LPGDTQVWQKVENILRETVASFGYQEIRFPIVESTDLFKRSIGEVTDIVEKEMYTFADRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
              +   P    V       +   Y      +Y +   FR E   +    +  +F ++  
Sbjct: 75  GDLLTLRPEGTAVCVRAGNENGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQFGLETF 133

Query: 161 YSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
                  +                        + LG            +     H  ++ 
Sbjct: 134 GIASADIDAEVILLTAQLWESFGISEHVRLELNSLGSNEARANYRDALVAYLEQHLDVLD 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSLP 272
            D+           +D   P       +   L+  ++  +   +A   +  +        
Sbjct: 194 EDSKRRMYSNPLRVLDSKNPDVQAILINAPKLSEHLDTESKEHFANLCERLDAAGVKYTI 253

Query: 273 ENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             K V         +F       G + ++     + G   +       + G         
Sbjct: 254 NEKLVRGLDYYNRTVFEWITDSLGAQGTVCAGGRYDGLVEQLGGKATPAVGFAMGLERLV 313

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMG 385
           ++  + +  G I  ++     + L ++     +       I A L +      V     G
Sbjct: 314 LLLQALECVGDIRRNA----DVYLASMGDKASIQAPI---IAATLRRDVPNLRVMVHAGG 366

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHRFSN 444
                Q   AD     + VI+G   +    V IK+ R    +  + LE+     +   ++
Sbjct: 367 GNFKKQLKRADKSDALVAVIIGEDELEQGVVTIKYLRERKEQVTLELEQAKALLAELINS 426


>gi|323702180|ref|ZP_08113847.1| histidyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323532867|gb|EGB22739.1| histidyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 419

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/403 (14%), Positives = 121/403 (30%), Gaps = 17/403 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  + R+     G  E+  P  +  +L+        D   KEM    DR D+++   
Sbjct: 20  WQYLEELARQVCREYGYSEIRTPIFEHTELFARGVGETTDIVEKEMYTFTDRGDRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  +       P   + I   FR +        +  +F ++   S   +P
Sbjct: 80  PEGTAAVVRAYLENKLYALPQPIKLFYIGPMFRYDRPQAGRFRQFHQFGVEVFGSN--SP 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCSK 225
                        Y RI        I         P+      E+       E    C  
Sbjct: 138 AVDAEVIAMAMDIYHRIGLTNLELHINSVGCPQCRPVLRQKLQEYFRP-QLAELCPNCQG 196

Query: 226 DFMDFPIPSENTDFDDIISLNSIVE--------QWTAPYAATSDVHNEKLFDSLPENKRV 277
            F   P+   +   +    +             +  A +       +      + +N+ V
Sbjct: 197 RFDRNPLRILDCKSEKCQEIGRHAPTTLDVLCPECQAHFELVKGYLDAVGVKYIVDNRLV 256

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RG++      F        + +  G  G+ + +     G  A  +  A+         
Sbjct: 257 --RGLDYYTNTAFEIMTRDIGAQSSIGGGGRYNGLIEACGGSAAPGIGFALGLERILLTA 314

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                +    +   + +             +  +L + G     D +G  + +Q   A  
Sbjct: 315 ERQGITFPISRGPAVFVATVGAGAETESFALVQKLRRHGIAADKDYLGRSLKAQMKYAGK 374

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           L   L +I+G + +S     +++   G +E++ L ++I+Y   
Sbjct: 375 LDARLVIILGEEELSRGVAVVRNMQAGSQEEVPLADIISYVKE 417


>gi|297584745|ref|YP_003700525.1| histidyl-tRNA synthetase [Bacillus selenitireducens MLS10]
 gi|297143202|gb|ADH99959.1| histidyl-tRNA synthetase [Bacillus selenitireducens MLS10]
          Length = 429

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 58/403 (14%), Positives = 117/403 (29%), Gaps = 16/403 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    R+   R    E+  P  +  +L+        D   KEM    D+  +++   
Sbjct: 23  WQYIENKARDLCARYRYREIRTPMFEQTELFARGVGDTTDIVQKEMYTFEDKGGRSLTLR 82

Query: 108 PTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P         F    +  + + P   + I   FR E      + +  +F ++   S    
Sbjct: 83  PEGTASTVRSFVDQKMHGWADQPVKLFYIGPMFRYERPQSGRMRQFVQFGVEAMGSS--D 140

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT--GETQVFCS 224
           P             Y  +  + G+K +           +  +  I   +   GE    C 
Sbjct: 141 PAIDAEVIGLAMDFYRELGLK-GVKLVLNSLGDQESRENHRNALISHFEPVIGELCSDCQ 199

Query: 225 KDFMDFPIPSENTDFDD-------IISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKR 276
                 P+   +   D          S+   + + +  Y  T   + E +      +   
Sbjct: 200 ARLEKNPLRILDCKKDRDHEKMAAAPSILDYLNEESKAYFETVKSYLEAMGIPYEVDPGL 259

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V          F          + T     G+ + +     G     +  A+        
Sbjct: 260 VRGLDYYNNTAFEIMIDGEGFGAITTLMGGGRYNGLVEEIGGPETPGIGFALSIERLLMA 319

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                 ++         + A     +    K+   L   G  V  D +  ++  Q   A 
Sbjct: 320 LESQGITLPVNHGIDAYMVALGDAAKAHVPKLVHELRSAGLSVDTDYLNRKMKGQMKAAG 379

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            L     +I+G + +    +E+KH  TG +E + + E+  Y  
Sbjct: 380 RLHARYALILGDEELEAGTIEVKHMETGNQETIQISELAAYLQ 422


>gi|255066456|ref|ZP_05318311.1| threonine--tRNA ligase [Neisseria sicca ATCC 29256]
 gi|255049336|gb|EET44800.1| threonine--tRNA ligase [Neisseria sicca ATCC 29256]
          Length = 310

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   I +   RD      +L L    +   + G+  W P G      +   +R+E N  G
Sbjct: 231 YIQRIEEAEKRDHRKLGKQLDLF--HLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAG 288

Query: 66  AIEMSVPTLQSADLW 80
             E+  P +   +L 
Sbjct: 289 YKEVKTPQIMDKNLL 303


>gi|87309331|ref|ZP_01091467.1| glycyl-tRNA synthetase [Blastopirellula marina DSM 3645]
 gi|87287970|gb|EAQ79868.1| glycyl-tRNA synthetase [Blastopirellula marina DSM 3645]
          Length = 536

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 111/344 (32%), Gaps = 15/344 (4%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           + A +   T + +  +       S   +PF   Q+   FR+E+ PR    RSREF   + 
Sbjct: 208 NSAYLRPETAQGIFVNFKNVVDSSRVRIPFGIAQVGKSFRNEITPRNFTFRSREFEQMEI 267

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F   P  S   Y        + +  +GL    +R        +   + +    TG   
Sbjct: 268 EFFCH-PSSSADWYTYWRNRRFQWYLDMGLAGDKLRL------REHHSDELSHYSTGTAD 320

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
           +  +  F+      E          +       +      D ++  L   L  N +   R
Sbjct: 321 IEYAFPFLPTGEYGELEGIAHRGDFD-----LRSHMEGKLDPNSNPLTLELDANGKPKHR 375

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           G      +              + + G D                            +  
Sbjct: 376 GSGKDLTYRDDLTNERFTPHVVEPSAGADRATLAFLCEAYTEDEAPDENGKLQSRLVMKL 435

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              +AP K ++  +   D    +  + IY  L K   +VF+D+ G  +G ++   D  G 
Sbjct: 436 HPRIAPIKAAVFPLVKKD-GMPEMSQDIYRALKKK-FNVFYDEKGA-VGRRYRRQDEAGT 492

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           P  + V  + ++D  V I+HR T  +  +  ++V+       S 
Sbjct: 493 PFCITVDGQSITDGTVTIRHRDTLEQWRVKQDDVVAEIDKLISE 536



 Score = 39.7 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 22/90 (24%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS-VP-------- 72
           R G + Q S       G + + PLG +   NV      +    G  ++S +P        
Sbjct: 12  RRGFLFQSSEIYGGINGFWDYGPLGVELKRNVKEAWWRDMVS-GHDDISTMPGAPQPYEM 70

Query: 73  ------TLQSADLWVESGRYDSYGKEMLRL 96
                  +    +W  SG YD +   M+  
Sbjct: 71  TGLDCTIIMHPQVWKCSGHYDLFHDYMVDC 100


>gi|323305259|gb|EGA59006.1| YER087W-like protein [Saccharomyces cerevisiae FostersB]
          Length = 509

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 81/303 (26%), Positives = 138/303 (45%), Gaps = 5/303 (1%)

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           GAIE+S+  + S  LW  + R+++   E+ +L D   K      T EE +TD+ +++I S
Sbjct: 6   GAIEVSLSAISSKALWQATDRWNN--SELFKLKDSKGKQYCLTATCEEDITDLMKNYIAS 63

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           Y+++P T YQ+  K+RDE+RPR G++R REFLMKDAYSF    E +  S+ K+  +Y +I
Sbjct: 64  YKDMPITIYQMTRKYRDEIRPRGGILRGREFLMKDAYSFASNEEDAFASFQKLDDTYNKI 123

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           F  L +  +   A+SG IGG+ S EF ++ ++GE  +   K   D      +  + +   
Sbjct: 124 FKDLKIPFVSAWADSGDIGGEFSKEFHLIHESGEDTLMSCKHCGDISTLDMSQSYPEKDG 183

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
             S        YA T D H+  +    P++++++                    +     
Sbjct: 184 QYSG--DVDCKYALTKD-HSTLICFYYPKDRQLNWNLALNAMDKDIDLTLRNKPNDHVLQ 240

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              KD+   M S  +  M        +  D     +  +       +  + A +      
Sbjct: 241 VYEKDNEDIMFSKILRVMDCRLNSKSNFPDFPLKKYLKNNFGQISDVSIVDAQENEICGK 300

Query: 365 CEK 367
           CE+
Sbjct: 301 CEE 303



 Score = 77.1 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 107/310 (34%), Gaps = 23/310 (7%)

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
                 +       +   +   +    +    +                + +    +  +
Sbjct: 158 DTLMSCKHCGDISTLDMSQSYPEKDGQYSGDVDCKYALTKDHSTLICFYYPKDRQLNWNL 217

Query: 196 RAESGPIGGDL------SHEFIVLADTGETQVFCSKDF--MDFPIPSENTDFDDIISLNS 247
              +     DL      +   + + +     +  SK    MD  + S++   D  +    
Sbjct: 218 ALNAMDKDIDLTLRNKPNDHVLQVYEKDNEDIMFSKILRVMDCRLNSKSNFPDFPLKKYL 277

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-AD 306
                     +  D    ++     E +    + IEVGHIF  G KYS P++  F    +
Sbjct: 278 KNNFGQISDVSIVDAQENEICGKCEEGRLEPLKSIEVGHIFLLGNKYSKPLNVKFVDKEN 337

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
             + +V MG YGIG  R+V A+ E   D  G  W  ++       I    ++       +
Sbjct: 338 KNETFVHMGCYGIGVSRLVGAIAELGRDSNGFRW-PAIMAPYKVSICTGPNNPENSQRLQ 396

Query: 367 KIYARLS--------KVGCDVFWDDMGEQ--IGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            + ++L         +       D   E+  IG++  ++  +G PL VIVGSK   + ++
Sbjct: 397 DVKSKLLNDPTMQNLQNDI---LDQFNEKLGIGARIKLSHAMGIPLCVIVGSKSWPNVEI 453

Query: 417 EIKHRLTGIR 426
           EI+    G +
Sbjct: 454 EIRGIRWGEK 463


>gi|303245826|ref|ZP_07332108.1| histidyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
 gi|302492609|gb|EFL52477.1| histidyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
          Length = 421

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/436 (14%), Positives = 128/436 (29%), Gaps = 41/436 (9%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRY 86
           I +  KG     P        +    R   +R G  E+ VP L+  +L+      E+   
Sbjct: 4   IQKI-KGFADLFPPDSTVFAFIEKTARAVFSRYGYKELRVPVLERTELFARGIGEET--- 59

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D   KEM    DR  +++   P     +        ++   L   ++     FR E   +
Sbjct: 60  DVVQKEMYTFPDRKGRSLTLRPEATAGVMRALVEDGRANEGLV-KYFAYGPMFRYERPQK 118

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL----------GLKSIPMR 196
               R R+F   D  +              M   YLR                 +  P  
Sbjct: 119 G---RMRQFHQIDVEAVGSPEPLLDAEVLLMLDQYLRALGLADLTVELNSLGCRQCRPAY 175

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAP 255
            +         H+  +  D    ++      +D  +P       D   + + +  +  A 
Sbjct: 176 LDVLREFLKGMHKEQLCEDCMRRKLTNPLRVLDCKVPQCKEFTADAPKITDHLCPECAAH 235

Query: 256 YAATSDVHNEK-----LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           +A  + + +       L   L        R          G++ S+     + G      
Sbjct: 236 FATVTGMLDAAGLRYTLNPRLVRGLDYYVRTTFEIVSGDIGSQSSVAGGGRYDGLVSAIG 295

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
              +   G        A++    +     +  +V             D    D    +  
Sbjct: 296 GPDVPGVGFACGMERLALLIDKVNEPAPDFYLAVL------------DASGLDRGLLLAQ 343

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L + G           + SQ   AD  G    +++G+  ++   V +K+   G +E ++
Sbjct: 344 DLRRAGFSGEAPYAARSVKSQMRAADKSGARFCLVLGTDELAAGTVVVKNMTAGGQETIN 403

Query: 431 LEEVINYASHRFSNNR 446
            + ++ +   R    +
Sbjct: 404 RDMLVAHLRARLEEAK 419


>gi|218708642|ref|YP_002416263.1| histidyl-tRNA synthetase [Vibrio splendidus LGP32]
 gi|254782355|sp|B7VJT9|SYH_VIBSL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|218321661|emb|CAV17615.1| Histidyl-tRNA synthetase [Vibrio splendidus LGP32]
          Length = 422

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/420 (14%), Positives = 123/420 (29%), Gaps = 32/420 (7%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKEMLRLA 97
           LP        V + ++   +  G  E+ +P ++  +L+      E+   D   KEM    
Sbjct: 15  LPTQSPLWQKVESAVKSVVSAYGYNEVRMPIVEETNLFSRAVGEET---DVVSKEMYTFD 71

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSR 153
           DRN  ++   P            +    R+    +Y +   FR E       R       
Sbjct: 72  DRNGDSLTLRPEGTAGCVRSCIQNSLINRDEQRLWY-MGPMFRHERPQKGRYRQFHQCGV 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           E    D    D           +            + +G +   +   +  +     H  
Sbjct: 131 EVFGLDGPDVDAELIMMTARLWRELGIDKHVRLELNSIGSQEDRVSYRTALVAFLEQHID 190

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFD 269
           ++  D            +D   P       D   L   + E+    +A   ++ +    +
Sbjct: 191 VLDEDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSEYLGEESKQHFAGLCELLDAVGIE 250

Query: 270 SLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                + V         +F       G + ++     + G   +       + G      
Sbjct: 251 YQVNERLVRGLDYYNRTVFEWITDSLGAQGTVCGGGRYDGLVEQLGGKATNAVGFAMGLE 310

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK--VGCDVFWD 382
              ++  + +   +     V              +    A  ++  +L     G  V   
Sbjct: 311 RLVLMMETLELTEVRRSVDVYMVAAG--------EGTMIAGMQLANQLRDTVEGVRVMNH 362

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             G     QF  AD +G  + +++G   V+D+ V +K  + G ++ +S  EV    +   
Sbjct: 363 FGGGNFKKQFKRADKVGAVVALVLGENEVADNTVVLKDLVGGEQQTVSQTEVAEKVAALI 422


>gi|183599737|ref|ZP_02961230.1| hypothetical protein PROSTU_03241 [Providencia stuartii ATCC 25827]
 gi|188021997|gb|EDU60037.1| hypothetical protein PROSTU_03241 [Providencia stuartii ATCC 25827]
          Length = 430

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 63/429 (14%), Positives = 134/429 (31%), Gaps = 33/429 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP   +    + A+++         E+  P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTRVWQKIEAVLKNILQGYSFSEIRTPIVEHTPLFSRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
             DR+D       +   P +          H   Y      +Y     FR E   +    
Sbjct: 70  FIDRHDTDKAEVSLTLRPENTAGCVRAGIEHGLLYNQEQRLWYL-GPMFRHERPQKG--- 125

Query: 151 RSREFLMKDAYSFDLTPEGSKH----SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           R R+F    A  F L              + + +     H     +     ++     + 
Sbjct: 126 RYRQFHQLGAEVFGLAGPDIDAELIMMTARWWRALGISEHVTLELNSIGSLDARANYREA 185

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
              F+        +  C +     P+   ++   D+ +L +   +        S  H + 
Sbjct: 186 LVAFLEQHKEKLDED-CKRRMYTNPLRVLDSKNQDVQALLNDAPELFDYLDDESREHFDG 244

Query: 267 LFDSLP------ENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKGADGKDHYVQ 313
           L   L          +   RG++     +F       G++ ++     + G  G+     
Sbjct: 245 LCKLLDAAGIQYRVNQRLVRGLDYYNRTVFEWVTTALGSQGTVCAGGRYDGLVGQLGGKP 304

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             +  +G    +  ++            D            +   +      E++   L 
Sbjct: 305 --TPAVGFAMGMERMVLLVESLNPGFIADESVTDVYLASFGENSQKSALLLAEQVRDALP 362

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                V  +  G     Q A AD  G  + +I+G + +++ +V +K   TG +E +S ++
Sbjct: 363 S--LRVMTNHGGGNFKKQLARADKQGAKVALILGEEEIANHQVGVKDLRTGEQETVSQQQ 420

Query: 434 VINYASHRF 442
           +    +   
Sbjct: 421 LAQRLAELL 429


>gi|294496132|ref|YP_003542625.1| histidyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
 gi|292667131|gb|ADE36980.1| histidyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
          Length = 413

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 67/413 (16%), Positives = 135/413 (32%), Gaps = 20/413 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   +LP   +    V   +R+  +R G  E+  PT ++ +L+  +SG  +    E+   
Sbjct: 8   GTRDFLPENTRLRRFVENRMRDVVSRWGYHEIITPTFENLELFTLKSG--EGVTGEIYNF 65

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           +D+ D+ +   P     +  ++ + ++     P   +  +  FR E   +    R REF 
Sbjct: 66  SDKGDRELALRPELTAPVMRMYVNEMQ-ATPRPLKLFYFENCFRYERPQKG---RFREFW 121

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE----FIV 212
                +   +   +      +    +      G   +        I  +L  E     + 
Sbjct: 122 QFGVETIGSSRPDADAEVIALAEEMIESVGIKGDLRVGHLGIIRHILKELEAEQQTKIMR 181

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISL--NSIVEQWTAPYAATSDVHNEKLFDS 270
           L D  +                   +  +++S+     +E+         ++H  +    
Sbjct: 182 LVDKKDDTGLDDYLEQINASIELRNELFELVSITGEDAIEKARQIVGDIEELHKFEELTQ 241

Query: 271 LPENKRVSA---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           + +   V      GI  G  +Y G  + +  S                 +  G   V + 
Sbjct: 242 ILDAYNVEYSMDFGIARGLDYYTGMVFEIYASNLGAQNQICGGGSYQLIHLFGGGDVPST 301

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                 D    I        K   + + A D    D    I   L +    V+ D M   
Sbjct: 302 GFGLGFDRIMEICELEPEQKK--EVVLVATDDTRLD-AIGIARELRRK-VPVYLDIMKRN 357

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              Q + A+ +G    VIVG + +   KV +K   +G +  +++EE   +   
Sbjct: 358 FKGQLSHANNIGARYVVIVGKREMEAGKVTLKDMGSGEQHQLTVEEAREHILK 410


>gi|330840876|ref|XP_003292434.1| hypothetical protein DICPUDRAFT_157146 [Dictyostelium purpureum]
 gi|325077326|gb|EGC31046.1| hypothetical protein DICPUDRAFT_157146 [Dictyostelium purpureum]
          Length = 686

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 6/146 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA------HD 358
             GK++Y  +     G  R++ A++E ++  +       V      +  +KA      + 
Sbjct: 522 KSGKNYYPHVIEPSFGLGRIIYALLEQNYWTRENDEQRGVLSLPAIIAPVKASILPLTNS 581

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       KI   L + G     DD G  IG ++A  D +G P  + +    V D  V +
Sbjct: 582 EKLVPFVAKISKLLKEAGISTKLDDTGNAIGRKYARTDEIGIPFGITIDFTTVEDETVTL 641

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           + R T  +  + + ++         N
Sbjct: 642 RERDTTKQIRIPITDLALTLKKLCDN 667



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/403 (12%), Positives = 98/403 (24%), Gaps = 47/403 (11%)

Query: 24  KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQS 76
           +LM R   I           G+Y + P G     N+    R+         E+   ++  
Sbjct: 80  ELMKRRFFITPAFQIYRGVAGLYDYGPPGCAVKANLINYWRQHFVLNEDMSEVDCTSVTP 139

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +   SG    +   M++  +            E  +  +      +   +    + + 
Sbjct: 140 EIVLKTSGHVAKFSDFMVKD-EVTKLYFRADHVLEGHIEKLLLDTKLTEDKVKELKHVLT 198

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS------YLRIFHRLGL 190
                  +     +        +  +    P      +            YLR     G+
Sbjct: 199 KAGDYNQQELKEALVKYNVKAPETGNALSDPYPFNLMFKTEIGPSGNNPGYLRPETAQGI 258

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS--ENTDFDDIISLNSI 248
                +           +EF             +    +    S         +  +   
Sbjct: 259 FVNFAKL----------YEFNGKKLPFAAAQIGNAFRNEIAPRSGLLRVREFTMAEIEHF 308

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL----PMSATFKG 304
           V      +    +V N+K+F    E +  +   IE      FG   S       +  +  
Sbjct: 309 VNPNEKTHPKFQEVANDKVFLLSSEAQDTTKEIIET----TFGDAVSKGLIDNETLAYFM 364

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           A  +     +G    G  R                W   +      +  +   D+ C D 
Sbjct: 365 ARTQLFLHTVGIKPAGL-RFRQHQRNEMAHYAKDCWDAEILTTYGWIECVGHADRSCYDL 423

Query: 365 ---CEK------IYARLSK--VGCD-VFWDDMGEQIGSQFAVA 395
                +      +Y          D    D   + +G QF  A
Sbjct: 424 TVHANESKANLTVYEEFKDGPKMIDIAVIDVKKQLMGKQFKQA 466


>gi|87300561|ref|ZP_01083403.1| histidyl-tRNA synthetase [Synechococcus sp. WH 5701]
 gi|87284432|gb|EAQ76384.1| histidyl-tRNA synthetase [Synechococcus sp. WH 5701]
          Length = 450

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 63/435 (14%), Positives = 126/435 (28%), Gaps = 31/435 (7%)

Query: 27  LRTGMIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES- 83
           +R+  + +     G+   LP       +V A+ R +  R G  E+  P L+  +L+    
Sbjct: 19  VRSAGVEKLQSLRGMVDLLPEQMPLWQHVEALARSQFRRAGLREIRTPLLEVTELFARGI 78

Query: 84  -GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
               D  GKEM    DR +++    P     +      H       P   +     FR E
Sbjct: 79  GEATDVVGKEMYTFLDRGERSCTLRPEGTASVVRAALQHGL-LSQGPQRLWYTGPMFRYE 137

Query: 143 LRPRFGVMRSREFLMKDAYSF-DLTPEGSKHSYNKMFVSYLR--------IFHRLGLKSI 193
                   R R+F            P     +    +               + LG  + 
Sbjct: 138 RPQAG---RQRQFHQAGIECLGFADPRSDAEAIAIAWDLLSELGVGGLALELNSLGDPAD 194

Query: 194 PMRAESGPIGGDLSHEFIVLADTGET------QVFCSKDFMDFPIPSENTDFDDIISLNS 247
                +  +        ++ A++ E       ++  SK+     + +E     D +S  S
Sbjct: 195 RAAYRTALVAWLEERRELLDAESRERITTNPLRILDSKNAETQAVLAEAPLLIDSLSDPS 254

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
                       +     +L   L                   G + ++     + G   
Sbjct: 255 RERFEAVRRCLEALEIPYQLNPRLVRGLDYYTHTAFEITSSQLGAQATVCGGGRYDGLIE 314

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       + G         ++ +  D        ++    +  + + +  +        
Sbjct: 315 QLGGAPTAAIGWAIGLERLVLLCAQRDAAEG----ALPTVPVPDVYVVSRGEAAERQALV 370

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR----LT 423
           +  +L + G  V  D  G   G Q   AD  G P  V++G        V +K+      +
Sbjct: 371 LSRQLRQAGQMVELDLTGSAFGKQLKRADRSGAPWAVVIGEGEAEQGVVLLKNLRRSADS 430

Query: 424 GIREDMSLEEVINYA 438
              E +   E++   
Sbjct: 431 PEEERLRPVELLRRL 445


>gi|262374931|ref|ZP_06068165.1| histidyl-tRNA synthetase [Acinetobacter lwoffii SH145]
 gi|262309944|gb|EEY91073.1| histidyl-tRNA synthetase [Acinetobacter lwoffii SH145]
          Length = 431

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/427 (11%), Positives = 120/427 (28%), Gaps = 23/427 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    A   +   +    +  G  ++ +P ++  +L+  S     D   KEM  
Sbjct: 9   GFNDILPTQTPAWRRLEQHLSGLMDAYGYQQIRLPIVEQTNLFKRSIGDATDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D+ +         E     +         R      + I   FR E   +    +  +
Sbjct: 69  FLDKGNPPESLTLRPEGTAGCVRAMLEHNLLRGATPRVWYIGPMFRYEKPQKGRYRQFHQ 128

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVL 213
           F ++         +             + +  ++ L+ +    ++          EF+  
Sbjct: 129 FGVETFGVATPDMDAELILMTARLWKRMGVADKVQLELNTLGESDERAAYRAALVEFLES 188

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               +      +     P+   ++      S+     +        +  H  +L   L +
Sbjct: 189 H-KADLDEDSQRRLTTNPLRILDSKDAKTQSILENAPKLHDFMGEETLAHFAQLQQYLTD 247

Query: 274 N------KRVSARGIEV-------GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                   +   RG++            + G++ ++     + G  G+       S    
Sbjct: 248 AGVSFVINQKLVRGLDYYNKTVFEWTTTHLGSQGTVCAGGRYDGLVGQLKGKADQSVPAV 307

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CD 378
              +    +    +      P       +          +     E+I  +L   G    
Sbjct: 308 GFAMGIERLLLLLEQVEDNTPTRDCEVFLVAEPASQGKALV--IAEQIRDQLEAAGSQVR 365

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +        + SQ   AD  G     I+G + +      +K   T  + ++   + + + 
Sbjct: 366 LKV-GSQGSMKSQMKKADQAGALYAAILGERELEAQAFTVKELATAEQSNVPFTDFVAFF 424

Query: 439 SHRFSNN 445
           S + S+ 
Sbjct: 425 STKISSK 431


>gi|312888874|ref|ZP_07748436.1| glycyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603]
 gi|311298615|gb|EFQ75722.1| glycyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603]
          Length = 493

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/475 (11%), Positives = 128/475 (26%), Gaps = 60/475 (12%)

Query: 20  IASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSV 71
           + SH      G + Q S        +Y +   G +  +N+     +   +     + +  
Sbjct: 12  VISHAKE--YGFVFQSSEIYDGLSAVYDYGQNGAELKNNIKTYWWKAMVQMHENIVGIDS 69

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM--------------TDI 117
                  +W  SG  D +   M+   D   +        E +                  
Sbjct: 70  AIFMHPKIWKASGHVDGFNDPMIDNKDSKKRYRADQLIEERIALYDTEGKTDLAEKLQHD 129

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY--- 174
               +KS          I+   +  +         R+F +  +  F    EGS+  Y   
Sbjct: 130 MDEALKSDDLGRLREIIIEHGIKCPISGTANWTEVRQFNLMFSTQFGAMAEGSEEIYLRP 189

Query: 175 --------------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
                             +       ++G            I      E + +       
Sbjct: 190 ETAQGIFVNFLNVQKSGRMKIPFGIAQIGKAFRNEVIARQFIIRMREFEQMEMQFFIRPG 249

Query: 221 VFCSKDFMDFPI--PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                                 D            A YA  +     +      E + + 
Sbjct: 250 TEMEWYEYWKAARLKWHVALGTDPAKYQYHDHAKLAHYANAAVDIEYEFPFGFKEVEGIH 309

Query: 279 ARG-IEVGHIFYFGTKYSLPMSATFKGADGKD---HYVQMGSYGIGAMRVVAAVIESSHD 334
           +R   ++     F  K             GK    +   +    IG  R+    + ++++
Sbjct: 310 SRTDFDLSQHQKFSNKKMQYFDPEVDPETGKPYGNYIPYVIETSIGLDRMFLLTMINAYE 369

Query: 335 GKGIIWPDSVAPFKISLINIK-----------AHDQVCRDACEKIYARLSKVGCDVFWDD 383
            + +   +      +  +                     +   +I  +L  +  +V +++
Sbjct: 370 EEDLSTEERQDSRTVLRLPAVLAPVKAAIFPLTKKDGLPEKAREIMDKLK-LEYNVQYEE 428

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
               IG ++   D +G P+ + V  + + D+ V I+HR +  +E +  +++    
Sbjct: 429 KDA-IGKRYRRQDAIGTPICITVDHQSLEDNTVTIRHRDSMAQERVPADDLTRIL 482


>gi|166362915|ref|YP_001655188.1| histidyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|189082301|sp|B0JRF1|SYH_MICAN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166085288|dbj|BAF99995.1| histidyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
          Length = 426

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/413 (13%), Positives = 115/413 (27%), Gaps = 24/413 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +              E+  P  +   L+        D  GKEM    DR  +++   
Sbjct: 21  WQWLEETASRILGTALYQEIRTPIFEQTQLFERGIGEATDVVGKEMYTFLDRRQRSLTLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  H           +     FR E        R R+F            
Sbjct: 81  PEGTAGVVRAYIEHKLQAAGGVQRLWYKGPMFRYERPQAG---RQRQFHQIGVELLGSDD 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-----TGETQVF 222
             +      +    L     +GL+++ +   S     D  +    L D       +    
Sbjct: 138 PRADVEVITLASEIL---KAVGLENLKLDINSLGNAQDRQNYRQALLDYLTPYKADLDAD 194

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR------ 276
             +     P+   ++  +    +   V        + S  H E++   L +         
Sbjct: 195 SQQRLEKNPLRILDSKDEKTKIICENVPSILEHLGSDSQKHFERVQSLLTDLGVIYNLNP 254

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F  + S  + A      G  +   +   G G                
Sbjct: 255 CLVRGLDYYTHTAFEIQ-SDDLGAQATVCGGGRYDGLIAQLG-GLDTPAVGWAIGLERLI 312

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            ++       F +    + +  +        +  +L  +G  V  D  G   G QF  AD
Sbjct: 313 ILLQQKQSLSFLVPDFYLVSKGEKAEARSVVLAQQLRGLGFSVELDLSGSAFGKQFKRAD 372

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN---YASHRFSNNR 446
                  +I+G     +  V++K   T  +  ++  +++        + S ++
Sbjct: 373 RAKAVGCIILGDAEAENGTVQLKWMATQEQISLTQADLLTQAGELKAQISRHK 425


>gi|84999162|ref|XP_954302.1| glycyl-tRNA synthetase  [Theileria annulata strain Ankara]
 gi|65305300|emb|CAI73625.1| glycyl-trna synthetase, putative [Theileria annulata]
          Length = 796

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 61/425 (14%), Positives = 132/425 (31%), Gaps = 85/425 (20%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R    +   +PF   QI L FR+E+ PR G++R REF M +   F
Sbjct: 356 YLRPETAQGIFVNFNRLLEFNGGKIPFAAAQIGLGFRNEISPRNGLLRVREFPMAEIEYF 415

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--------------------- 202
                 +   + +   + L +  R    +         +                     
Sbjct: 416 VNPKFKTHEKFPEFKNTVLPLLTRDQQTNDNFEPIHISMSEAVSSGIVGNEALAYFLART 475

Query: 203 -----------------GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                                +      +D  + ++  S  +++    ++   +D +   
Sbjct: 476 FLFLKRVGINEAGLRFRQHMANEMAHYASDCWDAEILTSYGWVEVVGHADRMAYDLMCHS 535

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLP--------------------------------- 272
            S   Q  A +   + +  EK+                                      
Sbjct: 536 KSTNSQLVAHHRYDNPIQVEKVLVKCNKPEIGKAFKSDQKILLNHLNNLTLQQSKELHER 595

Query: 273 -ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            EN          G  F                   +     +     G  R++ +++E 
Sbjct: 596 LENNTDGCVVSVDGKEFLLKKSMVSFEYVNV-NVCDETFVPCVIEPSFGLGRLIFSILEH 654

Query: 332 SHDGKGIIWP-----------DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           S+  + +               S+AP K S++ + +  +V      ++ A L ++G    
Sbjct: 655 SYRVRPVDVNVPEERKYVALNKSIAPTKCSVLPLSSK-EVFEPLITRVQAHLRRLGISHK 713

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D  G  IG ++A  D +G P  V +  + V+D  V ++ R T  +  + L+++    ++
Sbjct: 714 VDKTGASIGKRYARTDEIGIPFCVTLDFQSVNDDTVTLRERDTMQQVRIKLDDLGELINN 773

Query: 441 RFSNN 445
              ++
Sbjct: 774 LLKDD 778



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 59/179 (32%), Gaps = 12/179 (6%)

Query: 8   LPILQENPRDAEIASH----KLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAII 57
           L +  E  RD  + +      L+ R         I+  S G++ + P G      +  + 
Sbjct: 140 LKMSTEKLRDQLVLNKVDCENLLRRRFFYTNSFEIYGGSAGLFDFGPPGCALKSELERLW 199

Query: 58  REEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           RE        +E+S   +    +   SG  D +   M++     D         E+++++
Sbjct: 200 REHFVVFDEMLEVSCTCITPHPVLKSSGHVDRFTDLMVKNLSNGDC-YRADKYLEDLISN 258

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
           I ++  +S  N            + +L  +   M   E +           +  +  Y 
Sbjct: 259 IIQNKSQSNLNNSNDVGITNKNLKTKLNSKLEKMTLEELMRLRERVGTYNQDEMERFYM 317


>gi|31544425|ref|NP_853003.1| prolyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|81834139|sp|Q7NBP5|SYP_MYCGA RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|31541270|gb|AAP56571.1| Prolyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|284930481|gb|ADC30420.1| Prolyl-tRNA synthetase [Mycoplasma gallisepticum str. R(high)]
          Length = 474

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 76/431 (17%), Positives = 151/431 (35%), Gaps = 72/431 (16%)

Query: 19  EIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
           E+ S        +IH  + KG  S+LP G K    +   + +E ++   +E+ +P+L S 
Sbjct: 21  EVISK-----GNLIHYSNIKGFMSFLPNGWKIWQLIKKELTKEFDQRDILELCLPSLISQ 75

Query: 78  -DLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            D  +E    + +  E+          +  I  PT E    +++R  +++YR LP    Q
Sbjct: 76  NDFLLEKKHLEGFAPELFIVTKTSNETEKYILRPTSEIAFCNLWRETLRNYRQLPIKHNQ 135

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               FR E   R   +R+ EF   + +S   T E S      ++  Y R           
Sbjct: 136 WTSVFRVEKNTRP-FLRNSEFFWHEIHSCFETEEQSNDFAVDIWKLYQRFIKD------- 187

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                                     + C          +E                   
Sbjct: 188 --------------------------ILCIPLVAGEKTEAEK------------------ 203

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              A +    E +    P+ +      ++          +S      ++  +     V  
Sbjct: 204 FAGAKTTYTVETIM---PDGQ-----ALQSATSHNLSQNFSKAFDIRYQTKNNDYQNVFS 255

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLS 373
            S G+ + R++ A+I +  D  G+++P  VAP+ ISL  I    +Q      +++  + S
Sbjct: 256 MSAGV-STRIIGAIIMTHGDDDGLVFPTKVAPYHISLNCIFDDTNQELNAKLKELANKYS 314

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +    V  +   +  G     + L G    +++G   +  +++    R+T  ++ ++L+ 
Sbjct: 315 QK-YRVHLNVNKDSTGEIIKNSQLRGDCCVLLMGPNDLKKNEIVFIDRITKQKQFINLDH 373

Query: 434 VINYASHRFSN 444
           +       FS 
Sbjct: 374 LDQKLEELFST 384


>gi|313893030|ref|ZP_07826607.1| histidine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442383|gb|EFR60798.1| histidine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 423

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 62/415 (14%), Positives = 118/415 (28%), Gaps = 15/415 (3%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLA- 97
            +LP        +   +RE     G  E+  P  +   L++       D   KEM     
Sbjct: 11  DFLPEQMINWHYIEQRMREICKVYGFNEIRTPAFEDTKLFLRGIGETTDVVQKEMYTFTT 70

Query: 98  -DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D    +    P +       +  +    +     +Y +   FR +        R R+F 
Sbjct: 71  GDDGGSSFTLRPENTASAVRAYLENKVYGKEGLTKWYYMGPMFRHDKPQAG---RYRQFH 127

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
              A                M V  L+ F    L                  + I   + 
Sbjct: 128 QFGAEVLGSQSPVVDSEVICMVVQLLKDFGLKDLNVEVNSVGCPTCRPVYREKLIAFFEP 187

Query: 217 GETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            + Q+   C +     P+   +   +   SL+    +           H E+L   L   
Sbjct: 188 KKEQLCSDCQERLYKNPLRILDCKNETCKSLSVGAPEIHEHLCGECHDHFEELKTYLTAA 247

Query: 275 KRVSA------RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      RG++      F  +Y+   + +     G+   +     G     +  A+
Sbjct: 248 NVQYTLNPRLVRGLDYYTKTAFEVQYTPLGAQSAVAGGGRYDGLVEELDGPHTPAIGFAM 307

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                            P   S + + A     +    KI   L      V  D  G+ +
Sbjct: 308 GMERLLLALEKQNLLPEPTVESSVFVVALGDAAKVEAFKICQALHDAYVTVEMDGQGKSM 367

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +Q   A+ +     +I+G   ++  +  I+   T  +E +SL+ V    +    
Sbjct: 368 KAQLKYANKINAKYVIILGDDELARGEAIIRFMDTSEQETVSLDAVSERITSLVK 422


>gi|308806117|ref|XP_003080370.1| putative glycyl-tRNA synthetase (ISS) [Ostreococcus tauri]
 gi|116058830|emb|CAL54537.1| putative glycyl-tRNA synthetase (ISS) [Ostreococcus tauri]
          Length = 529

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 90/300 (30%), Gaps = 11/300 (3%)

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           + + R   FLM      D      +         Y        ++      E   +    
Sbjct: 208 YFIARCHLFLMAIG--IDSARLRFRQHLKHEMAHYAADCWDAEIQCSYGWIECVGLADRS 265

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSE-NTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           + +    ++  +  +   + F D PI  E      +   L    ++   P         E
Sbjct: 266 AFDLNAHSEKSKVDLVAYERF-DTPIQEEVLVMTPNKQILGKAFKKDAKPITEALQALGE 324

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-DGKDHYVQMGSYGIGAMRV 324
               +L E    ++          F     +          +G+++   +     G  R+
Sbjct: 325 AEAFALQEACAANSSAALKTDAGEFQVSADMFKVEKVTKTLNGRNYTPSVIEPSFGIGRI 384

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKA------HDQVCRDACEKIYARLSKVGCD 378
           +  + E +   +      +V      +  IK       +D    D   ++   L+  G  
Sbjct: 385 MYCMFEHAFYIRPDDEQKTVLKLTPVVAPIKTTIFPLVNDDKLNDIANQMNKTLTSNGIS 444

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              D     IG ++A  D LG P  V V  +  +D  V ++ R +  +  + + EV    
Sbjct: 445 AKLDTTAVSIGKRYARTDELGVPFAVTVDHRSTTDGTVTVRERDSCDQVRVPMTEVAELL 504


>gi|110770771|ref|XP_001123266.1| PREDICTED: translation initiation factor IF-3-like, partial [Apis
           mellifera]
          Length = 283

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 34/82 (41%)

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +   ++ A L   G  V  DD  E+I ++     L   P+ +++G K   +  + ++
Sbjct: 23  DVENYAREVVALLKAQGIRVELDDRNEKINAKIREHSLQHVPVILVIGRKEAEERHLAVR 82

Query: 420 HRLTGIREDMSLEEVINYASHR 441
                 +E M+L E ++     
Sbjct: 83  RLGGKSQEIMALNEAMDQLRSL 104


>gi|163847354|ref|YP_001635398.1| proline--tRNA ligase [Chloroflexus aurantiacus J-10-fl]
 gi|222525199|ref|YP_002569670.1| Proline--tRNA ligase [Chloroflexus sp. Y-400-fl]
 gi|163668643|gb|ABY35009.1| Proline--tRNA ligase [Chloroflexus aurantiacus J-10-fl]
 gi|222449078|gb|ACM53344.1| Proline--tRNA ligase [Chloroflexus sp. Y-400-fl]
          Length = 525

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 8/185 (4%)

Query: 259 TSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +D+   +  D  P     R+  RG  +G I         P +   + A+G++  + +  
Sbjct: 347 VADISQAEAGDPCPWCGTARIEGRGALIGAITAPQ-----PTALLVQDAEGQNRPLIITG 401

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             I    ++  V+E  HD +GI+WP ++APF I L+ +    +    A   + A L   G
Sbjct: 402 LEIDLEPLLYLVVEQHHDERGIVWPAAIAPFAIHLVTLGRG-EAVVTAGHALAAMLQTAG 460

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V  DD  E+ G +F  ADL+G P +V++  K ++ +++EI+HR       +    ++ 
Sbjct: 461 WHVLIDDRDERAGVKFNDADLIGAPWRVVISEKLLAANQLEIRHRTAAQATVIDQSALLT 520

Query: 437 YASHR 441
               R
Sbjct: 521 VIGQR 525



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 3  RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           +  F   L++ P +A+  + +L+ R GMI     G  + LPLG   L  ++  +     
Sbjct: 4  LATLFGRTLRQAPAEADTRAAQLLWRAGMIRALDNGEPALLPLGSAVLRRLSHHLTTAIQ 63

Query: 63 RTGAIEMSVPTLQSADLWVES 83
            GA E+ +P   S   W  +
Sbjct: 64 AGGAQEVYLPN-TSTATWPAT 83


>gi|118431208|ref|NP_147510.2| threonyl-tRNA synthetase [Aeropyrum pernix K1]
 gi|150421682|sp|Q9YDW0|SYT1_AERPE RecName: Full=Probable threonyl-tRNA synthetase 1; AltName:
           Full=Threonine--tRNA ligase 1; Short=ThrRS 1
 gi|262118516|pdb|3A32|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase
           Thrrs-1 From Aeropyrum Pernix
 gi|116062532|dbj|BAA79787.2| threonyl-tRNA synthetase [Aeropyrum pernix K1]
          Length = 471

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 103/351 (29%), Gaps = 21/351 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G+  +   G      +  ++ +   R G   +  P + S +L+  SG  + Y   M  
Sbjct: 38  GAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNM-Y 96

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSH---IKSYRNLPFTFYQIQLKFRDELRPR-FGVMR 151
           L D         P +      +F +     +S   LPF  ++     R E     +G++R
Sbjct: 97  LFDIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLR 156

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVS--YLRIFHRLGLKSIPMRAESGPIGGDLS-H 208
            R F   DA+            Y+        L    +LG+ S   +         L   
Sbjct: 157 VRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGK 216

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           EF+   +  E          +    + +   +        +E   A Y    D       
Sbjct: 217 EFMGSKEEWEGA-------EEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIMMVEE 269

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             + +  ++     +    F    ++ L      +   G +    +    +G++     V
Sbjct: 270 SGVSKEWQMGTIQFD----FNLPRRFRLYDV--VREEFGIEEVYIIHRALLGSIERFLGV 323

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                 G+       +    I++      D+   D    I   L   G  V
Sbjct: 324 YLEHRRGRMPFTLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRV 374


>gi|326675882|ref|XP_002665325.2| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic,
           partial [Danio rerio]
          Length = 464

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 83/232 (35%), Gaps = 20/232 (8%)

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F +   T   +    +   +          ++      +     A Y    D+    + D
Sbjct: 235 FQLHLSTRPQKFLGDEALWNQAEKQLENSLNEFGEPWKLNPGDGAFYGPKIDI---NIKD 291

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ--MGSYGIGAMRVVAA 327
           ++    + +   ++    F    ++    + T+ G DG D      +    +G++  + A
Sbjct: 292 AIGRYHQCATIQLD----FQLPIRF----NLTYVGKDGDDRDRPVIIHRAILGSVERMIA 343

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGE 386
           ++    +     WP  ++P ++ L+ +    +   +  +++  R  + G     D D   
Sbjct: 344 ILT---ENYAGKWPLWLSPRQVMLVPVNPSLE---EYAKQVCKRFVEAGFMADADLDSSC 397

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +  +   A L  +   ++VG K    + V ++ R   +  ++ + EV+   
Sbjct: 398 LLNKKIRNAQLAQYNFILVVGEKERLSNSVNVRTRDNKVHGELPVLEVMERL 449



 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H  S G   +LP G    + +   IR E
Sbjct: 114 KMLKEWERFQEEAKSRDHRKIGKDQELF--FFHDLSPGSCFFLPRGAFIYNTLMDFIRGE 171

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
            +R G  E++ P + ++ LW  SG +  Y +
Sbjct: 172 YSRRGFQEVATPNIYNSRLWETSGHWQLYTQ 202


>gi|159027044|emb|CAO89230.1| hisS [Microcystis aeruginosa PCC 7806]
          Length = 426

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 55/413 (13%), Positives = 115/413 (27%), Gaps = 24/413 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +              E+  P  +   L+        D  GKEM    DR  +++   
Sbjct: 21  WQWLEETASRILGTALYQEIRTPIFEQTQLFERGIGEATDVVGKEMYTFLDRGQRSLTLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  H           +     FR E        R R+F            
Sbjct: 81  PEGTAGVVRAYIEHKLQAAGGVQRLWYKGPMFRYERPQAG---RQRQFHQIGVELLGTDD 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-----TGETQVF 222
             +      +    L     +GL+++ +   S     D  +    L D       +    
Sbjct: 138 PRADVEVITLASEIL---KAVGLENLKLDLNSLGNAQDRQNYRQALLDYLTPYKADLDAD 194

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--- 279
             +     P+   ++  +    +            + S  H E++   L +   +     
Sbjct: 195 SQQRLEKNPLRILDSKDEKTKIICENAPSILEHLGSDSQKHFERVQSLLTDLGVIYNLNP 254

Query: 280 ---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F  + S  + A      G  +   +   G G                
Sbjct: 255 SLVRGLDYYTHTAFEIQ-SDDLGAQATVCGGGRYDGLIAQLG-GPDTPAVGWAIGLERLI 312

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            ++       F +    + +  +        +  +L  +G  V  D  G   G QF  AD
Sbjct: 313 ILLQQKQSLSFLVPDFYLVSKGEKAEARSVVLAQQLRGLGFSVELDLSGSAFGKQFKRAD 372

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN---YASHRFSNNR 446
                  +I+G     +  V++K   T  +  ++  +++        + S ++
Sbjct: 373 RAKAVGCIILGDAEAENGTVQLKWMATQEQISLTQADLLTQARELKAQISRHK 425


>gi|325958418|ref|YP_004289884.1| glycyl-tRNA synthetase [Methanobacterium sp. AL-21]
 gi|325329850|gb|ADZ08912.1| glycyl-tRNA synthetase [Methanobacterium sp. AL-21]
          Length = 575

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 84/277 (30%), Gaps = 16/277 (5%)

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
              Y         +  R G   I   A+          ++         +        D 
Sbjct: 299 MAHYAIDCWDVEVLTDRFGWIEIIGIADRTDFDLKSHAKYS-------NEDLSVFIEYDE 351

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATS-DVHNEKLFDSLPENKRVSARGIEVGHIFY 289
           P           +     + +  AP    + +  +      + +N       +E   +  
Sbjct: 352 PKKINKLVVKPDMKKFGPLFKADAPKVIKALEDLDASEVQRVFDNGETYNIDLEDKTVEI 411

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP----DSVA 345
                S           G+     +     G  R++ +V+  S+              +A
Sbjct: 412 SSDVVSFNEQEEMV--RGEKVVPHVIEPSFGIDRIIYSVLLHSYTEDDEREFLKLEKQIA 469

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P  +++  +   D++  +   +I   L   G    +D  G  IG ++A +D +G P  V 
Sbjct: 470 PIGVNVFPLVNKDKLA-EKAHEIREELRNQGIIAEYDGSG-TIGRRYARSDEIGVPFAVT 527

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           V  + + ++ V I++R    +  + ++ V +      
Sbjct: 528 VDHETLENNTVTIRNRDNLEQVRIPVQNVYSVLIDLL 564



 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYD 87
           +  I+  S G + + PLG    +N+ +  R+      G  E+  PT+   +    SG  D
Sbjct: 19  SFEIYSGSAGFFDYGPLGATLKNNIISKWRKYYIVGEGFYEIESPTIMPEEALKASGHVD 78

Query: 88  SYGKEMLRLADRND 101
            +   M    D  +
Sbjct: 79  HFTDPMTECKDCLE 92


>gi|294155542|ref|YP_003559926.1| glycine--tRNA ligase [Mycoplasma crocodyli MP145]
 gi|291600446|gb|ADE19942.1| glycine--tRNA ligase [Mycoplasma crocodyli MP145]
          Length = 468

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 73/461 (15%), Positives = 151/461 (32%), Gaps = 58/461 (12%)

Query: 19  EIASHKLMLRTGMIHQHS---KGI---YSWLPLGQKALDNV-----NAIIREEQNRTGAI 67
           EI +H  +  +G + Q S    G+   + + PLG    DN+        I +E N     
Sbjct: 25  EIVNH--LKSSGFVFQGSEIYGGLSNTWDYGPLGSLLKDNIAYSWKQNFIWKEANNH--- 79

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLA--------DRNDKAMIYGPTHEEVMTDIFR 119
            +    L + ++WV SG   ++   ++           D+  + +      E++  +  +
Sbjct: 80  LIDSKILMNPNVWVTSGHVSNFSDPLIENKINQKRYRADKLIQEINPDIIPEKMTFEEMQ 139

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
             +  +       Y+       E++    +  +++ + +D+ S       +       F 
Sbjct: 140 IFLNEHMKE----YEGSKATWGEIKKFNLMFETKQGVTEDSKSKVYLRPETAQGIFINFK 195

Query: 180 SYLRIFH--------RLGLKSIPMRAESGPIGGDLSHE------FIVLADTGETQVFCSK 225
           + LR           ++G            I      E      F        T  +  +
Sbjct: 196 NVLRTTRSKLPLGIGQIGKSFRNEVTPGNFIFRTREFEQMELEVFCYPELASNTYEYYIQ 255

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
              DF I         I       E+ +   A T+D+  E  F            GI   
Sbjct: 256 KCYDFVIN-LGVSPKLIRKRVHDKEELSHYSAGTTDIEFEFPF------GWGELLGIANR 308

Query: 286 HIFYFGTKYS-LPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSH------DGKG 337
             F      S    S  +      K     +    +G  R++ A++ +++      DG  
Sbjct: 309 TDFDLKAHMSATNESLEYLDPETNKKIIPFIIEPSVGLDRLMLAILCAAYEEEKLEDGDT 368

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
            I            + I    +   D  ++I+ +L +      +D+ G  IG ++   D 
Sbjct: 369 RIVLRLNKKLSPYKVAILPLVKKLGDKAKEIFDKLIENSVQATYDETG-SIGKRYRRQDA 427

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +G    + +    + D  V I+ R T  +  + ++++ NY 
Sbjct: 428 IGTFYCITIDYDSLEDDSVTIRERDTMNQTRIKIDDIKNYL 468


>gi|258627190|ref|ZP_05721978.1| histidyl-tRNA synthetase [Vibrio mimicus VM603]
 gi|262165072|ref|ZP_06032809.1| histidyl-tRNA synthetase [Vibrio mimicus VM223]
 gi|258580492|gb|EEW05453.1| histidyl-tRNA synthetase [Vibrio mimicus VM603]
 gi|262024788|gb|EEY43456.1| histidyl-tRNA synthetase [Vibrio mimicus VM223]
          Length = 422

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 62/411 (15%), Positives = 119/411 (28%), Gaps = 16/411 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V  +++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFL 156
             ++   P            +   Y      +Y +   FR E       R       E  
Sbjct: 75  GDSLTLRPEGTAGCVRSGIENGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQCGVEVF 133

Query: 157 MKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             D    D           +            + +G         S  I     ++ ++ 
Sbjct: 134 GIDGPDVDAELIMMTARLWRELGISEHVRLELNSIGSLEARANYRSALIEYLEQYQSVLD 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSLP 272
            D            +D   P       D   L+  ++  +   +A   ++ +    +   
Sbjct: 194 EDCKRRMYTNPLRVLDSKNPDVQAILGDAPQLSDYLDAESKQHFAGLCELLDAAGIEYTV 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             + V         +F      SL    T  G  G  +   +   G      V   +   
Sbjct: 254 NQRLVRGLDYYNRTVFE-WITESLGSQGTVCG--GGRYDGLVEQLGGKPTPAVGFAMGLE 310

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGS 390
                +    +    +   + +    +    A  K+  +L +   G  V     G     
Sbjct: 311 RLVLMMETLGNTEVRRSVDVYMVTAGEGTMMAGMKLAEQLREQVPGLRVMTHFGGGNFKK 370

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           QF  AD +G  + +++G   V+   V +K    G +  ++  EV    +H 
Sbjct: 371 QFKRADKVGAAIALVLGEDEVAAQTVVVKDLAGGDQSTVAQAEVAKLLTHL 421


>gi|253689382|ref|YP_003018572.1| histidyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259511952|sp|C6DBH3|SYH_PECCP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|251755960|gb|ACT14036.1| histidyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 424

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 58/421 (13%), Positives = 126/421 (29%), Gaps = 21/421 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++  +  G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPAETALWQRIENSLKQVLSGYGYNEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF---RDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y   +       + R R      
Sbjct: 70  FDDRNGDSLTLRPEGTAGCVRAGIEHGILYNQEQRLWYVGPMFRYERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + ++           + +G      R     +     H+
Sbjct: 130 CEVFGLQGPDIDAELILMTARWWRVLGIADHVKLELNSIGSLDARARYREALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNE--- 265
             +  D            +D   P      +D   L   ++  +   + A  ++  +   
Sbjct: 190 DQLDEDCLRRMYTNPLRVLDTKNPQIQVLLNDAPVLTDYLDDESREHFEALGELLTQSGI 249

Query: 266 --KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L        R +        G + ++     + G   +       + G     
Sbjct: 250 PYTVNPRLVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDGMVEQLGGHATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVFWD 382
               ++  S +        +     + LI+  A  Q       EK+   L ++     + 
Sbjct: 310 ERLVLLVQSVNPD----FKAQPGVDVYLISSGAGTQVAAMQLAEKLRDALPQLKLMTNY- 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             G     QFA AD  G  + +++G   V+  +V +K+   G ++ ++  +V +  +   
Sbjct: 365 -GGGNFKKQFARADKWGARVALVLGENEVAAGQVVVKNLSNGEQDTLAQADVASRLATLL 423

Query: 443 S 443
            
Sbjct: 424 D 424


>gi|24374822|ref|NP_718865.1| histidyl-tRNA synthetase [Shewanella oneidensis MR-1]
 gi|32130107|sp|Q8EC33|SYH_SHEON RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|24349508|gb|AAN56309.1|AE015769_5 histidyl-tRNA synthetase [Shewanella oneidensis MR-1]
          Length = 425

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 62/417 (14%), Positives = 124/417 (29%), Gaps = 16/417 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        V A++R      G  E+  P +++ DL+  S G   D   KEM  
Sbjct: 10  GMNDILPTQSPLWQKVEAVLRSSVAAYGYSEIRTPIVENTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y +   FR E   +    +  +F
Sbjct: 70  FEDRNGDSLTLRPEGTASTVRAGNEHGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQF 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            ++         +      +                 + LG  +         I     H
Sbjct: 129 GVEIYGIGSADIDAEVLMLSARLWEKLGITEHVTLELNTLGDPAERAAYREALIAFLEQH 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKL 267
           +  +  D+           +D   P   +   D  +L   + E+ +  +A   ++ +   
Sbjct: 189 KDKLDEDSQRRMYSNPLRVLDSKDPQVQSILADAPALMDYLGEESSQHFAQLRELLDAVG 248

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                 ++ V         +F      SL    T       D  V             A 
Sbjct: 249 IQYRVNSRLVRGLDYYNRTVFE-WVTNSLGSQGTVLAGGRYDGLVAQLGGKETPAVGFAM 307

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMG 385
            +E        +      P ++ +      D    +   K+   L        V     G
Sbjct: 308 GLERIVLLLETLALTQDIPAEVDVYVAAMGDNCLVE-AIKVAQELRSALPTLRVMSHCGG 366

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHR 441
             +  Q   AD  G  + +++G + +++  V +K+ R    ++ ++   +  + +  
Sbjct: 367 GNLKKQMKRADKSGAQVALLIGEEELAEGVVTVKYLRNDNEQQRVARNALSAFLAEL 423


>gi|256823054|ref|YP_003147017.1| histidyl-tRNA synthetase [Kangiella koreensis DSM 16069]
 gi|256796593|gb|ACV27249.1| histidyl-tRNA synthetase [Kangiella koreensis DSM 16069]
          Length = 423

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 60/426 (14%), Positives = 126/426 (29%), Gaps = 34/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        + +++R+     G  E+ +P ++   L+  S G   D   KEM  
Sbjct: 10  GMNDILPDSTPHWQKLESVLRQLMASYGYNEIRMPVVEKTHLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y       + +   FR E   +    R R+F
Sbjct: 70  FEDRNGDSLTLRPEGTASCVRAGIEHGLLYNQEQ-RLWYMGPMFRHERPQKG---RYRQF 125

Query: 156 LMKDAYSF-DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                 +F   TP+            +  I     +        S     +   + +   
Sbjct: 126 HQLGVETFGVSTPDVDAELILMTARLWKMIGIHSSVHLEINSLGSNEARAEYRDKLVAFL 185

Query: 215 D--TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF---- 268
           +           +     P+   ++   ++  L     +        S+ H E+L     
Sbjct: 186 EPIKDLLDEDSQRRLTTNPLRILDSKNPEVQKLVKDAPKLNEHLDEESEQHFERLCQILD 245

Query: 269 ---------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                     +L        R +        G + ++     + G   +       + G 
Sbjct: 246 TNNIPYTINTNLVRGLDYYNRTVFEWVTDKLGAQGTICAGGRYDGLTEQLGGHSTPASGF 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--C 377
                    +         + P+ VA   + ++ +  H ++      ++  +L       
Sbjct: 306 AMGLERIVALIQ------EMAPEEVATADVYMVALGEHAELS---ALQLAEQLRDQWPAI 356

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVIN 436
            V  +        QF  AD  G  + +++G + V D  V +K+ R    +  +S  ++  
Sbjct: 357 RVRMNCGAGNFKKQFKRADKSGAKIALVIGEQEVQDGTVGVKYLREHKEQLVVSQRDISQ 416

Query: 437 YASHRF 442
                 
Sbjct: 417 LLEQYL 422


>gi|119719206|ref|YP_919701.1| glycyl-tRNA synthetase [Thermofilum pendens Hrk 5]
 gi|119524326|gb|ABL77698.1| glycyl-tRNA synthetase [Thermofilum pendens Hrk 5]
          Length = 497

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 118/351 (33%), Gaps = 18/351 (5%)

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           ++  A +   T + + T+           LPF   QI   FR+E+ PR  + R REF   
Sbjct: 159 KSMTAYLRPETAQLIFTNFKNVVFTMGATLPFGIAQIGKAFRNEISPRNFLFRLREFTQM 218

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIF-HRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           +   F    + ++  Y K        F      +     A+S  +G  +    I  A   
Sbjct: 219 EIEYFVNPEKLNECPYFKEVEELRVNFLSAEEQERGVSEAKSIKLGEAVETGVIKNAWHA 278

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
                  +      +  E     +       V+   A YA    V    +    P     
Sbjct: 279 YWIGESLRWLWSLGLRPERLRVRE------HVKTELAHYA----VQTFDIEYFFPYMGWK 328

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH---- 333
              GI     +           A     +GK     +     G  R++ AV+  S+    
Sbjct: 329 EIEGIANRSDYDLKRHQEYSGEALHIVDNGKTVIPYVIEPSFGLERILLAVLTDSYVREE 388

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
               +     +APFK ++  +   D        +IY +L K     ++D+    IG ++A
Sbjct: 389 RRTYLRLKPRIAPFKCAVFPLVKRD-GLDVKAREIYNQLKKH-FRCYYDE-DGSIGRRYA 445

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            AD +G P  + +  + + D  V I+ R T  +    +E +    S   + 
Sbjct: 446 KADEIGVPFSITIDGQTLRDDTVTIRFRDTKEQIRERVENLKARLSELIAT 496


>gi|311273541|ref|XP_003133917.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Sus scrofa]
          Length = 384

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 4/115 (3%)

Query: 2   RRSKYFLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K +    +E   RD         L     H+ S G   +LP G    + +   IR E
Sbjct: 265 KMLKEWEKFQEEAKNRDHRKIGRDQELY--FFHELSPGSCFFLPKGAYIYNTLIDFIRSE 322

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
             + G  E+  P + ++ LWV SG +  Y   M       +      P +     
Sbjct: 323 YRKRGFQEVVTPNIYNSRLWVTSGHWQHYSDNMFSFEVEKEL-FALKPMNCPGHW 376


>gi|167749878|ref|ZP_02422005.1| hypothetical protein EUBSIR_00846 [Eubacterium siraeum DSM 15702]
 gi|167657190|gb|EDS01320.1| hypothetical protein EUBSIR_00846 [Eubacterium siraeum DSM 15702]
          Length = 436

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 58/406 (14%), Positives = 108/406 (26%), Gaps = 18/406 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I R      G  E+  PT +  +L+     G  D   KEM    D+  +++   
Sbjct: 32  WHTVEKIARNVAEAYGCKEIRTPTFEHTELFQRGVGGTTDVVQKEMYTFNDKKGRSITLK 91

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL-T 166
           P            +      LP   Y     FR E        R REF       F   +
Sbjct: 92  PEGTAGAVRAVIENGLLNDALPLKTYYFTRCFRYEAPQSG---RLREFNQVGIEYFGTAS 148

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P                +  +     I       P      H+ +    +      C   
Sbjct: 149 PAADAEVIALANDIIKSLGVKNISIEINSIGC--PKCRAEYHKALKEYYSQYKDQLCGTC 206

Query: 227 FMDFPIPSENTDFDD------IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--- 277
                                      ++  +          + +K  D L  +  V   
Sbjct: 207 LERLDRNPMRLLDCKSEICSSFKKDAPMILDYLCDDCREHFENVKKRLDVLGVSYTVNPL 266

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RG++      F    +   S     A G+ + +     G     +  A+         
Sbjct: 267 IVRGLDYYTNTVFEFISNEIGSQGAVCAGGRYNGLVEEIGGNSVPGLGFAMGLERIIMVM 326

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                   P K   + I + D        ++  +L + G     D  G    +Q   A+ 
Sbjct: 327 ENQKLEFEPEKKCDLYIASFDDETSIYAMELVQKLREEGFWAECDISGRSFKAQMKYANK 386

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-VINYASHRF 442
           +G    +++G   ++    ++K    G    ++L++      +   
Sbjct: 387 IGATYCMVIGGDEMNTKSAKLKRMSDGTETPVTLDDKFCEKLNTMI 432


>gi|81301072|ref|YP_401280.1| histidyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
 gi|123741727|sp|Q31KX6|SYH_SYNE7 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|81169953|gb|ABB58293.1| histidyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
          Length = 435

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 54/408 (13%), Positives = 112/408 (27%), Gaps = 23/408 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +   L+        D  GKEM    DR 
Sbjct: 14  LPPETQVWQWIEQTAREILGRAAVQEVRTPIFEQTALFERGIGEATDVVGKEMYSFRDRG 73

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+++   P         +  H  + +      +     FR E        +  +  ++  
Sbjct: 74  DRSLTLRPEGTAGTVRAYIEHGLASQGGVQRLWYTGPMFRYERPQAGRQRQFHQLGLELL 133

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------ 214
            + D   +    +     +  L + +     +    A           +++         
Sbjct: 134 GTADARADAEAIALATQILQALGLKNLRLDLNSVGDASDRAAYRQALVDYLTPYAADLDP 193

Query: 215 ------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                 +    ++  SKD     I +E     D +S  S           T    + +L 
Sbjct: 194 DSRDRLERNPLRILDSKDERTQAIVAEAPSLHDYLSERSRQLFEQVQQLLTHLGIDYRLE 253

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             L                   G + ++     + G   +    +  + G         +
Sbjct: 254 PKLVRGLDYYTHTAFEIISSDLGAQATVCGGGRYDGLVSQLGGPETPAVGWAMGLERLVL 313

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +                        + +   +       +  +L   G  V  D  G   
Sbjct: 314 LLQQGQAVPP---------ATLDFYLVSRGAIAEGQALILAQKLRSAGFGVELDLSGSAF 364

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G QF  AD  G    +++G       +V +K   +G ++ +   E++ 
Sbjct: 365 GKQFKRADRSGAIACLVLGDAEAEQGQVNLKWLQSGEQQTLDQSELLQ 412


>gi|292655989|ref|YP_003535886.1| histidyl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291370647|gb|ADE02874.1| histidyl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 431

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 129/427 (30%), Gaps = 45/427 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P    A   V   +     R G  E+  P L+   ++  +SG  +   +E+   
Sbjct: 7   GFRDFYPGEMSARREVVDTVETAAARYGFREIGTPHLERTQMYVDKSG--EEIVEELYAF 64

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +  +  +  +   + P  +   +  +R E   +    R REF 
Sbjct: 65  EDKGGREVALTPELTPTVARMVVAKQQ-ALSKPIKWVSTRPFWRYEQVQQG---RFREFY 120

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL--- 213
             +A  F  +   +           L             R     I G L   F V    
Sbjct: 121 QTNADIFGSSEPEADAEILAFCADALTDLGLTADDFEF-RVSHRDILGGLLRSFDVDVDV 179

Query: 214 ---------ADTGETQVF---------CSKDFMDFPIPSENTDFDDIISL-----NSIVE 250
                    ++  E   +               +F    E  D D+I +       + VE
Sbjct: 180 ADAVRAVDKSEKVERAEYLGLLSDAGLSYDQADEFADLIERGDLDEIAAFGGDDVEAAVE 239

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKG-ADG 307
                 AA  D    +      E    +ARG++   G +F           ATF G    
Sbjct: 240 NLRNVLAAADDFGAGEFC----EVSLSTARGLDYYTGVVFECFDSTGDVSRATFGGGRYD 295

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                  G         +          +  +WPD        L+ +       R     
Sbjct: 296 DLIESFGGQSTPAVGVGIGGATLQLLCQRAGVWPDEELATDYYLLTVGD----TRGVASD 351

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I   L   G  V  D      G+Q + AD +     VIVG + + + +V +K   +G + 
Sbjct: 352 IARDLRAAGNVVEVDVSDRSFGAQMSYADSVNADTVVIVGERDLENGEVTVKDMASGDQT 411

Query: 428 DMSLEEV 434
            + +++ 
Sbjct: 412 TVPVDDF 418


>gi|218515175|ref|ZP_03512015.1| threonyl-tRNA synthetase [Rhizobium etli 8C-3]
          Length = 328

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 7   FLPIL-QENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           +L +L +   RD      ++ L      +   G+  W   G +    + A +R       
Sbjct: 234 YLHMLAEAEKRDHRKLGREMDL--LHFQEEGPGVVFWHGKGWRIFQTLVAYMRRRL-AAD 290

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
             E++ P +    LW  SG +  Y  + +R  
Sbjct: 291 YQEVNAPQVLDTSLWETSGHWGWYQGKHVRRE 322


>gi|315023937|gb|EFT36939.1| glycyl-tRNA synthetase [Riemerella anatipestifer RA-YM]
          Length = 513

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 74/512 (14%), Positives = 143/512 (27%), Gaps = 103/512 (20%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM--S 70
           ++ SH      G I   S        +Y +   G +  +N+     +   +     +   
Sbjct: 10  KVVSHAKE--YGFIFPSSEIYDGLSAVYDYGQNGAELKNNIKQYWWKAMTQLNENIVGLD 67

Query: 71  VPTLQSADLWVESGRY-------------------------------DSYGKEMLRLADR 99
              L     W  SG                                 D   KE+ +   R
Sbjct: 68  SAILMHPTTWKASGHVDAFNDPLIDNKDSKKRFRADVLIEDYCAKLEDKAQKEIAKAQKR 127

Query: 100 NDKAMIY-GPTHEEVMTDIFRSHIKS-----YRNLPFTFYQIQLKFRDE---LRPRFGVM 150
                      +       +R   KS      ++L            +E     P  G  
Sbjct: 128 FGADFDEEQFVNTNPRVLEYRERQKSILTRMAKSLDNNDLADVKALIEELEIADPDTGSK 187

Query: 151 RSRE---FLMKDAYSFDLTPEGSKHSY-----------------NKMFVSYLRIFHRLGL 190
              E   F +        + E +   Y                             ++G 
Sbjct: 188 NWTEVRQFNLMFGTKLGASAENAMELYLRPETAQGIFVNFSNVQKTSRHKLPFGIAQIGK 247

Query: 191 KSIPMRAESGPIGGDLSHEFIVL----------ADTGETQVFCSKDFMDFPIPSENTDFD 240
                      I      E + +          +   E +       +   + +EN  F 
Sbjct: 248 AFRNEIVARQFIFRMREFEQMEMQFFVAPGTELSFYEEWKQKRLNWHLALGLGTENYKFH 307

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D   L        A YA  +     K      E + + +R            K+S     
Sbjct: 308 DHEKL--------AHYANAAADIEFKFPFGFKELEGIHSRTDFDLSAHE---KFSGRKLQ 356

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAV---------IESSHDGKGIIWPDSVAPFKISL 351
            F    G+ +   +    +G  R+  AV         +E       +  P ++AP K ++
Sbjct: 357 YFDPERGESYVPYVVETSVGLDRMFLAVFSSSLKEEALEDGSTRTVLSLPPALAPVKAAI 416

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           + +   D    +  EKI+  L     +V +++    IG ++   D +G P  + V    +
Sbjct: 417 LPLVKKD-GLPEFAEKIFNELK-YDFNVIFEEKD-SIGKRYRRQDAIGTPFCITVDHDSL 473

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +D+ V ++ R T  +E +S+E++      + +
Sbjct: 474 NDNTVTLRERDTMKQERVSVEDLRKIIDDKVN 505


>gi|219117560|ref|XP_002179573.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408626|gb|EEC48559.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 602

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 61/370 (16%), Positives = 127/370 (34%), Gaps = 48/370 (12%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  ++  L+D    A +   T + +  +       S + +PF   QI   FR+E+ PR  
Sbjct: 264 FQTQVGALSDAASVAYLRPETAQGIFLNFKNVLTTSRQKIPFGIAQIGKAFRNEITPRNF 323

Query: 149 VMRSREFLMKDAYSFDLT-----PEGSKHSYNKMFVSYLRIF-HRLGLKSIPMRAESGPI 202
           + RSREF   +   F        P   +   +      L I      L       +    
Sbjct: 324 IFRSREFEQMEVEYFIPPGDEVWPAFHQQWIDDSRAFLLSIGLQEELLGWDVHEGDKLAH 383

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                 +       GE ++       ++ +   +       S    +E + A   + +  
Sbjct: 384 YAQACTDITFRFPFGEQELMGIAARGNYDLSQHSEGSGKTCSGVGTLEAFRAFLNSYAIC 443

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            N                G+E                  +     + +        +G  
Sbjct: 444 FNSV--------------GLEY-----------------YDEQTKEKYIPHCIEPSLGVD 472

Query: 323 RVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           R++ A+I S++    +         +   +AP K++++ +  + +        ++ +L +
Sbjct: 473 RLMLALICSAYAEDEVGGEKRSLLKFDPKIAPIKVAVLPLLKNKEELVSVARDLFDKLRR 532

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS-DSKVEIKHRLTGIREDMSLEE 433
              +  +D  G  IG ++  AD +G P  V +    +  D+ V I+ R T  +  + L++
Sbjct: 533 RW-NCQYDAAGA-IGRRYRRADEVGTPYCVTIDFDTIETDNAVTIRDRDTTDQVRIPLKD 590

Query: 434 VINYASHRFS 443
           VI+Y S R  
Sbjct: 591 VISYLSERID 600



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 17/103 (16%)

Query: 13  ENPRD---AEIASHK------LMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAII 57
           E P D   AE  ++       L  R G+I   S       G Y + PLG +   NV    
Sbjct: 63  EAPSDVVVAEALTYSMEDVVGLCKRRGIIFPSSEIYNGYAGFYDYGPLGSELKKNVKDAW 122

Query: 58  RE--EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
            +     R   + +    + + + W  SG  D +   M+   +
Sbjct: 123 WKNFVMMREDVVGVDSSIIHNPETWKSSGHVDGFSDPMVDCKE 165


>gi|78211740|ref|YP_380519.1| histidyl-tRNA synthetase [Synechococcus sp. CC9605]
 gi|78196199|gb|ABB33964.1| histidyl-tRNA synthetase [Synechococcus sp. CC9605]
          Length = 445

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 70/438 (15%), Positives = 121/438 (27%), Gaps = 35/438 (7%)

Query: 31  MIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VES 83
            + Q     G+   LP   +    V A  RE   R+G  E+  P L++ DL+       +
Sbjct: 15  HVSQLQSLRGMVDLLPEVLQRWQAVEAKAREHFQRSGFGEIRTPLLETTDLFCRGIGEGT 74

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
              D  GKEM    DR D++    P     +      H    +     +Y     FR E 
Sbjct: 75  ---DVVGKEMYSFQDRGDRSCTLRPEGTASVVRAALQHGLLSQGAQKLWYA-GPMFRYER 130

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
                  R R+F              S      +    L      GL+       +    
Sbjct: 131 PQAG---RQRQFHQIGVEWLGAERARSDVEVIALAWDLLASLGVGGLQLELNSLGT-AED 186

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                  +V      ++V                      +  +++E       A SD  
Sbjct: 187 RKAYRNALVAWLEQRSEVLDPDSQARLSTNPLRILDSKNKNTQALLEDAPTLVDALSDAS 246

Query: 264 NEKLFD----------------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
            E+  +                 L       +           G + ++     + G  G
Sbjct: 247 RERFEEVQRGLTSLGIHFLLNPRLVRGLDYYSHTAFEITSDQLGAQATVCGGGRYDGLIG 306

Query: 308 KDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
           +    Q  + G   G  R++  +  ++            A     +  +   D+      
Sbjct: 307 QLGGPQTPAIGWALGMERLLLVLEAAAKADPQGDAARLTAAAAPDVFLVNRGDE-AECVA 365

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG- 424
             +   L   G  V  D  G   G QF  AD  G    +++G + V   +V +K      
Sbjct: 366 LALARDLRAAGLRVELDGSGSAFGKQFKRADRSGASWAMVLGDEEVERGEVRLKRLQQQA 425

Query: 425 IREDMSLEEVINYASHRF 442
               ++L  V        
Sbjct: 426 EESTVALAPVAAIVEKLL 443


>gi|297566580|ref|YP_003685552.1| glycyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
 gi|296851029|gb|ADH64044.1| glycyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
          Length = 507

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 122/374 (32%), Gaps = 56/374 (14%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +   +  +AD +    +   T + +  +       + R LPF   QI   FR+E+ PR  
Sbjct: 171 FKTTIGPVADEDSYGYLRPETAQGIFVNFKNVLDSTSRRLPFGIAQIGKAFRNEITPRNF 230

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P   +H +     + L  +   G+    ++            
Sbjct: 231 IFRVREFEQMEIEYFVK-PGTDEHWHQHWLETRLEWWEAQGIPRAQIQV----------- 278

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                                  +P E+       + + +    T  +     + N   +
Sbjct: 279 ---------------------LDVPKEDLAHYSKRTYDLLYNFPTLGFEEIEGIANRSDY 317

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     K  S  GI+           S    A      GK     +     G  R V AV
Sbjct: 318 DLGSHTKAQSELGIQAR---VMENTDSTAKLAIQDPETGKWIVPFVIEPSAGVDRGVLAV 374

Query: 329 IESSHDGKGIIWPDSVA---------PFKISLINIKAHDQVCRDACEKIYARLSKVGC-D 378
           +  ++  + +   +            P K+++I +  + +      + +  +L  +G   
Sbjct: 375 LSEAYTREKLESGEERIVLKLKPHLAPIKVAVIPLAKNKEEITRYAKDLKRKLQALGMGR 434

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV---SDS------KVEIKHRLTGIREDM 429
           V ++D G  IG  +   D +G P  V V    +    D        V ++ R T  +E +
Sbjct: 435 VLYEDTG-NIGKAYRRHDEVGTPFCVTVDYDTIGKSQDGSTTLMDTVTVRDRDTMQQERV 493

Query: 430 SLEEVINYASHRFS 443
            ++E+  Y   R  
Sbjct: 494 HVKELPQYLQERLR 507


>gi|254167523|ref|ZP_04874375.1| glycyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623786|gb|EDY36349.1| glycyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 549

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 72/526 (13%), Positives = 159/526 (30%), Gaps = 122/526 (23%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLW---------------- 80
           G Y + PLG    +N+  + ++E   + G + +  P +    ++                
Sbjct: 22  GFYDYGPLGAALKENILKVWKDEFVIKDGLLMLDGPNIGPELMYIASGHAEKFADYMVRC 81

Query: 81  VESGRY-------------------------------------------DSYGKEMLRLA 97
            + G                                             +S+        
Sbjct: 82  KKCGHVFRADGLLKGVVENPEKLDKKGISKAIKEHGIKCPDCGGELTEPESFHLMFSTTV 141

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             + +A +   T + +  +    +  +   LP    QI   FR+E+ PR G++R REF M
Sbjct: 142 GLDKRAFLRPETAQGIFVNFPIMYRLNREKLPLGVAQIGKGFRNEISPRQGLLRLREFNM 201

Query: 158 -----------------KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR---- 196
                             +  +  L     +        +  R      +     +    
Sbjct: 202 AEIELFVDPYDEDILNDLEDVNLHLLTREGEELKLSTKEAVERNLMNAHIAYYMAKIVKF 261

Query: 197 AESGPI------GGDLSHEFIVLA--DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            ++  I            E +     DT + ++  S  +++    ++  D+D    +   
Sbjct: 262 LDTLGIDLNRVRFRQHFKEELAHYSRDTWDCEILLSSGWVEVTGIADRGDYDLKRHMTYS 321

Query: 249 VEQWTA-----------------------PYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
               TA                       P          ++ +S+          I+  
Sbjct: 322 GRDLTAIRRFKEPKKIKIKKLRARMEILGPMFKKDAKKIAEILESMEYVDGNIEIEIDGK 381

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI------I 339
           ++      Y + +     G  G+     +     G  R++ AV+E S   +         
Sbjct: 382 NVKIPRDAYEIKIEEEVIG--GERFVPHVIEPSFGIDRILYAVLEHSFYEREDTGYKVLK 439

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
               +AP K+++  + A D         +  ++ + G   ++DD G  IG ++A AD +G
Sbjct: 440 LKPKIAPIKVAIFPLMAKD-GLDTVARDVLNKIREGGITSYYDDSG-SIGRRYARADEIG 497

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            P  + V  + + D+ V I+ R +  ++ + ++ +           
Sbjct: 498 VPFCITVDYESLKDNTVTIRERDSAKQKRVRIDAIPKILEDLVDER 543


>gi|302874941|ref|YP_003843574.1| histidyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|302577798|gb|ADL51810.1| histidyl-tRNA synthetase [Clostridium cellulovorans 743B]
          Length = 415

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 58/404 (14%), Positives = 125/404 (30%), Gaps = 22/404 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   +R+     GA E+  P  +  +L++       D   KEM    D+  +++   
Sbjct: 20  WQYLEEKMRKTAAEYGAREIRTPAFEHTELFIRGVGETTDVVQKEMYTFEDKGGRSVTLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F          P   Y     FR E   +  +    +F ++   S D + 
Sbjct: 80  PEGTASAVRAFIEGSLFNDAQPTKMYYFTPVFRYENVQKGRLREHHQFGVEVFGSQDASI 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +    S     ++ L + +     +         I      EF+      +    C   F
Sbjct: 140 DSELISLALRVLTELGVNNLELNINSIGCPNCRAIYNAALKEFLKKN-YDDLCPTCKSRF 198

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSARG 281
              P+   +   +    +N+   +           H E L   L       +      RG
Sbjct: 199 EKNPMRILDCKEEKCKIINASAPEILDYLDDECKSHFEALKAYLTAMDIKYKINPRIVRG 258

Query: 282 IEV--GHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ++     +F      +++     +     +     M + G G       +          
Sbjct: 259 LDYYTKTVFEILNNNFTVCGGGRYDNLINQVGGPSMPAVGFGMGMERLIL-------TLE 311

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +       + I A     +    K+   L K+G     D M + + +Q   A+ +
Sbjct: 312 ESNIEIPRTPYIDLYIGAMGDSSKIESLKLAYNLRKLGLKCEIDHMNKSVKAQMKYANKI 371

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE---VINYAS 439
                +I+G   ++  KV++K    G + +++LE+   +++   
Sbjct: 372 DASYTLILGDDELATKKVKLKRMSDGEQLEINLEDYDKIVSLVK 415


>gi|161502324|ref|YP_001569436.1| histidyl-tRNA synthetase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|189082307|sp|A9MHL6|SYH_SALAR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|160863671|gb|ABX20294.1| hypothetical protein SARI_00357 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 424

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 59/426 (13%), Positives = 117/426 (27%), Gaps = 33/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        + + ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIESTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            E         D         + +       +   L         E+     D    F+ 
Sbjct: 130 AEVFGLQGPDIDAELIMLTARWWRALGIAEHVSLELNS---IGSLEARANYRDALVAFLE 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD--- 269
                  +  C +     P+   ++   D+ +L +            S  H   L     
Sbjct: 187 QHQETLDED-CKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHFAGLCKLLD 245

Query: 270 ----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                      L        R +        G++ ++     + G   +       + G 
Sbjct: 246 AAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGF 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                   ++                   +  I + A     + A   +  RL     DV
Sbjct: 306 AMGLERLVLLV-------QAVNPEFIASPVVDIYLVAAGTETQSAAMTLAERLRDEMPDV 358

Query: 380 FWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                    G    QFA AD  G  + +++G   V++  V +K   +G +  ++ + V  
Sbjct: 359 KL-ITNHGGGNFKKQFARADKWGARIALVLGESEVANGTVVVKDLRSGEQTAVAQDSVAA 417

Query: 437 YASHRF 442
           +     
Sbjct: 418 HLRTLL 423


>gi|297294085|ref|XP_001089812.2| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like, partial
           [Macaca mulatta]
          Length = 400

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 103/312 (33%), Gaps = 40/312 (12%)

Query: 60  EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           E  + G  E+  P + ++ LW+ SG +  Y + M       +      P +      +F 
Sbjct: 95  EYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFD 153

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
              +S+R LP       +  R+EL     G+ R R F   DA+ F    +          
Sbjct: 154 HRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDE-IKGCL 212

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                ++   G         + P       E                   D         
Sbjct: 213 DFLRTVYSVFGFSFKLN-LSTRPEKFLGDIE-----------------VWDQAEKQLENS 254

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            ++      +     A Y    D+   ++ D++    + +   ++    F    ++    
Sbjct: 255 LNEFGEKWELNSGDGAFYGPKIDI---QIKDAIGRYHQCATIQLD----FQLPIRF---- 303

Query: 299 SATFKGADGKD--HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
           + T+   DG D    V +    +G++  + A++    +  G  WP  ++P ++ ++ +  
Sbjct: 304 NLTYVSHDGDDKKRPVIVHRAILGSVERMIAILT---ENYGGKWPFWLSPRQVMVVPVGP 360

Query: 357 HDQVCRDACEKI 368
               C +  +K+
Sbjct: 361 ---TCDEYAQKV 369


>gi|291557530|emb|CBL34647.1| histidyl-tRNA synthetase [Eubacterium siraeum V10Sc8a]
          Length = 441

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 58/406 (14%), Positives = 108/406 (26%), Gaps = 18/406 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I R      G  E+  PT +  +L+     G  D   KEM    D+  +++   
Sbjct: 37  WHTVEKIARNVAEAYGCKEIRTPTFEHTELFQRGVGGTTDVVQKEMYTFNDKKGRSITLK 96

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL-T 166
           P            +      LP   Y     FR E        R REF       F   +
Sbjct: 97  PEGTAGAVRAVIENGLLNDVLPLKTYYFTRCFRYEAPQSG---RLREFNQVGIEYFGTAS 153

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P                +  +     I       P      H+ +    +      C   
Sbjct: 154 PAADAEVIALANDIIKSLGVKNISLEINSIGC--PKCRAEYHKALKEYYSQYKDQLCGTC 211

Query: 227 FMDFPIPSENTDFDD------IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV--- 277
                                      ++  +          + +K  D L  +  V   
Sbjct: 212 LERLDRNPMRLLDCKSEICSSFKKDAPMILDYLCDDCREHFENVKKRLDVLGVSYTVNPL 271

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RG++      F    +   S     A G+ + +     G     +  A+         
Sbjct: 272 IVRGLDYYTNTVFEFISNEIGSQGAVCAGGRYNGLVEEIGGNSVPGLGFAMGLERIIMVM 331

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                   P K   + I + D        ++  +L + G     D  G    +Q   A+ 
Sbjct: 332 ENQKLEFEPEKKCDLYIASFDDETSIYAMELVQKLREEGFWAECDISGRSFKAQMKYANK 391

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-VINYASHRF 442
           +G    +++G   ++    ++K    G    ++L++      +   
Sbjct: 392 IGATYCMVIGGDEMNTKSAKLKRMSDGTETPVTLDDKFCEKLNTMI 437


>gi|307069528|ref|YP_003878005.1| putative threonyl-tRNA synthetase [Candidatus Zinderia insecticola
           CARI]
 gi|306482788|gb|ADM89659.1| putative threonyl-tRNA synthetase [Candidatus Zinderia insecticola
           CARI]
          Length = 467

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/405 (13%), Positives = 118/405 (29%), Gaps = 39/405 (9%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQ 75
           D  I   K  L      +   G+  W   G     N+N  IR     +    E+  P + 
Sbjct: 73  DHRILYKKNNLF--FFKKKMPGLIFWNKNGYIIWKNINKYIRNNIYIKYNYKEIKTPIIL 130

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
               W ++  ++ Y K M  L  + +K     P +      I+     SY+ LP  + +I
Sbjct: 131 RDYFWKKTKHWNYYKKNMFLLKTK-NKKYALKPMNCPGHIQIYNYKKISYKKLPLKYGEI 189

Query: 136 QLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
              FR+E      G++R + F   D + F    +              +++     K+I 
Sbjct: 190 GECFRNEYTGSLHGILRLKNFNQDDGHIFCKKNQILLELIKFN-NICKKVYKNFNFKNIK 248

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           ++    P                  +   +    +                   +E+  A
Sbjct: 249 IKLSLRP-----------------KKKIGNNYLWNLSEKILLKIILFFNIKIKNIEKNGA 291

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
            Y    + + + L   +           + G I        +         + K + + +
Sbjct: 292 FYGPKIEYYLKDLNKKI----------WQCGTIQIDFIISKILNLNYNNKYNIKKNIIIL 341

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
               +G++     ++  ++ G    +   +    I++ N              I   L K
Sbjct: 342 HRAILGSIERFIGILIENNKGYIPFYLIPIQIVIININNKILK------YTNNIIKILKK 395

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               +        +  +            +++G+K      + +K
Sbjct: 396 NKFRIKKIINNNNLSLKLKKYFSYKSYFCILIGNKENKKKSIFLK 440


>gi|330446670|ref|ZP_08310322.1| histidyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490861|dbj|GAA04819.1| histidyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 422

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 55/414 (13%), Positives = 116/414 (28%), Gaps = 20/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V   +++  +  G  E+ +P ++S  L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKVEGTVKQVISAYGYNEIRMPIVESTHLFKRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRSREFLM 157
             ++   P            +   Y      +Y     + +   + R R       E   
Sbjct: 75  GDSLTLRPEGTAGCVRAGIQNGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQVGVEVFG 134

Query: 158 KDAYSFDLTPEGSKHSYNKM---FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            +    D           +            + +G            I     H  ++  
Sbjct: 135 LNGPDIDAELIMMTARLWRELGIHEHVRLELNSIGSLEARAEYRKALIAFLEQHLDVLDE 194

Query: 215 DTGETQVFCSKDFMDFPIPS-ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           D            +D    + +    D       +  +    +    ++ +         
Sbjct: 195 DAKRRMYTNPLRVLDTKNAAIQEILVDAPKLSEYLDPESKEHFDGLCELLDAAGIKYQVN 254

Query: 274 NKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            + V         +F       G + ++     + G   +       S G         +
Sbjct: 255 ERLVRGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLVEQLGGKATPSVGFAMGLERLVL 314

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +  + +   +     V         + A         EK+   +S  G  V     G   
Sbjct: 315 LMEALEQDEVRRSVDVYVVTAGEGTLAAG----MTLAEKLRTEVS--GLRVMTHFGGGNF 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             QF  AD +G  + +++G   ++++ V +K    G +  M+ +EV    +   
Sbjct: 369 KKQFKRADNVGAAVALVLGENEIAENTVVVKDLHGGEQTTMAQDEVAAKLAALI 422


>gi|259482954|tpe|CBF77921.1| TPA: glycyl-tRNA synthetase (AFU_orthologue; AFUA_5G05920)
           [Aspergillus nidulans FGSC A4]
          Length = 689

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 90/273 (32%), Gaps = 12/273 (4%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     +   K+    P+    T  +
Sbjct: 398 FRQHMANEMAHYACDCWDAELYTSYGWIECVGCADRSAYDLNVHKNKTGAPLVVRETRAE 457

Query: 241 DIISLNSIVEQWTAPYAA---TSDVHNEKLFDSLPEN-------KRVSARGIEVGHIFYF 290
            +      +E     +           E   D+L +               IEVG+I   
Sbjct: 458 PLKVEEWQIELDKKKFGPRFKKDGKTVEAAIDALSQELREKLALDLEKTGKIEVGYIITI 517

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             +  +     +   +  +    +G      M  V    E       + +P  +AP K+ 
Sbjct: 518 EKRTRVENVREYT-PNVIEPSFGIGRILYSLMEHVYYYREGDEARGVLSFPPVIAPTKVL 576

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           L+ + ++    R   +++  +L ++G     DD    IG ++A  D LG P  V V  + 
Sbjct: 577 LVPLSSN-PAFRPMVQELTTKLRRLGVSSRVDDSSASIGKRYARNDELGTPFGVTVDFQS 635

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           V D+ + ++ R +  +   S EE++        
Sbjct: 636 VKDNTITLRDRDSTKQVRASQEEILQALKSLVE 668



 Score = 53.6 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G   L+N+    R+        +E+    L   ++   SG  D +   M +
Sbjct: 85  SGLYDYGPPGCAVLNNIVETWRKHFVLEEDMLEVDCTMLTPEEVLKTSGHVDKFADWMCK 144


>gi|124024229|ref|YP_001018536.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
 gi|166228594|sp|A2CCR1|SYH_PROM3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123964515|gb|ABM79271.1| Histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
          Length = 436

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 63/418 (15%), Positives = 116/418 (27%), Gaps = 26/418 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G+   LP   +    V ++ R+   R G  E+  P L+  +L+        D  GKEM  
Sbjct: 9   GMVDLLPEQTRCWQAVESVARDHFRRAGLQEIRTPLLEVTELFARGIGEATDVVGKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR D++    P     +      H       P   +     FR E        R R+F
Sbjct: 69  FVDRGDRSCTLRPEGTASVVRAALQHGL-LSQGPQRLWYGGPMFRYERPQAG---RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL-- 213
                    +    S      +  + L      GL        +         E +    
Sbjct: 125 YQIGVEYLGVGSPRSDAEVIALAWALLVDLGVQGLVLEINSLGTLQDRQKYREELVAWLE 184

Query: 214 -------ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                   D+ +         +D   P+ +    D  +L   +   +        V  E 
Sbjct: 185 ARSDQLDDDSRKRLYTNPLRILDSKNPAISELLQDAPTLFEALSVESKARFEEVQVDLEA 244

Query: 267 LFDSLPENKRVSARGIEVGHIF------YFGTKYSLPMSATFKG--ADGKDHYVQMGSYG 318
           L      N R+       GH          G + ++     + G              + 
Sbjct: 245 LQIPFQLNPRLVRGLDYYGHTAFEITSDQLGAQATVCGGGRYDGLVEQLGGAPTPAFGWA 304

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G  R++  +  ++            A  +  L  +    +        I  +L   G  
Sbjct: 305 FGMERLMLLLESAASINPNGSAARLTASTRPDLYVVNRG-EQAERVALVIAHQLRAAGLV 363

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR--LTGIREDMSLEEV 434
           V  D  G     QF  A        +++G       +  +K+    T     + ++++
Sbjct: 364 VELDSSGSAFNKQFKRAGRSRATWALVIGDDEAERGEARLKYLQEATTQANPIPIDQL 421


>gi|76664827|emb|CAJ17850.1| threonyl-tRNA synthetase [Candidatus Phytoplasma solani]
          Length = 302

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 3/140 (2%)

Query: 8   LPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           L +L+E   RD +  + +L L      +   G+   LP G      V   I +++     
Sbjct: 156 LQLLEERKQRDHKRLNKELDLFM-FSKEVGLGLPFLLPKGATLRRIVERYIVDKELSYEY 214

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLAD-RNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             +  P + + +L+  SG  + Y + M  +    + + ++  P +      I++   +SY
Sbjct: 215 HHVYTPIMTNTELYRISGHLEHYAENMFPVMRLESGEQLVLRPMNCPHHMIIYKKTPRSY 274

Query: 126 RNLPFTFYQIQLKFRDELRP 145
           + LPF   ++ +  R E   
Sbjct: 275 KELPFRIAELGMMHRFEKSG 294


>gi|157961134|ref|YP_001501168.1| histidyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
 gi|189082311|sp|A8H246|SYH_SHEPA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|157846134|gb|ABV86633.1| histidyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
          Length = 424

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 61/424 (14%), Positives = 126/424 (29%), Gaps = 28/424 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        +  ++R+     G  E+  P ++S DL+  S G   D   KEM  
Sbjct: 10  GMNDILPTQSPLWQKLETVLRDTVGSYGYSEIRTPIVESTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y +   FR E   +    R R+F
Sbjct: 70  FEDRNGDSLTLRPEGTASTVRAGNEHGLLYNQEQRLWY-MGPMFRHERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNK----------MFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
                  + +                     +        + LG            I   
Sbjct: 126 HQFGVEVYGIPTADIDAEVLMLSAKLWEKLGITEHVTLELNTLGDTEERAAYRDALIAFL 185

Query: 206 LSHEFIVLADTGETQVFCSKDFMD-FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             H+ ++  D+           +D      +    D  + ++   E   + ++   ++  
Sbjct: 186 EQHKEVLDEDSQRRMYSNPLRVLDSKNADVQALLADAPVLMDYFGEDTRSHFSHLCELLE 245

Query: 265 EKLFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                     + V         +F       G++ ++     + G  G+       + G 
Sbjct: 246 AVGIQYTINPRLVRGLDYYNRTVFEWVTSSLGSQGTVLAGGRYDGLVGQLGGKPTPAVGF 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                   ++  + +    I P           N K          +++ A L       
Sbjct: 306 AMGLERIVLLLQTLELDKDIGPAVDVYVTAMGDNCKV---EAIKIAQELRASLPTAKVMS 362

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYA 438
                G     Q   AD  G  + +++G   +++++V +KH R    +E ++ + +  Y 
Sbjct: 363 HC--GGGNFKKQMKRADKSGACVALVIGEDELANNQVAVKHLREDKAQELVARDALATYI 420

Query: 439 SHRF 442
           +   
Sbjct: 421 AELI 424


>gi|260776632|ref|ZP_05885527.1| histidyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607855|gb|EEX34120.1| histidyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 422

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 58/411 (14%), Positives = 120/411 (29%), Gaps = 14/411 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        +   ++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKLENAVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFDDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSH---IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
             ++   P            +    +S + L +     + +   + R R       E   
Sbjct: 75  GDSLTLRPEGTAGCVRSCIENSLIDRSEQRLWYMGPMFRHERPQKGRYRQFHQCGVEVFG 134

Query: 158 KDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            D    D           +            + +G         +  I     H  ++  
Sbjct: 135 LDGPDVDAELIMMTARLWRELGIDKHVRLELNSIGSLEDRANYRTALIAFLEQHIDVLDD 194

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPE 273
           D            +D   P       D   L+  + E+    +A   ++ +    +    
Sbjct: 195 DCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSDYLGEESKQHFAGLCELLDAAGIEYTVN 254

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            + V         +F +    +  + A      G  +   +   G  A   V   +    
Sbjct: 255 ERLVRGLDYYNRTVFEW---ITESLGAQGTVCGGGRYDGLVEQLGGKATPAVGFAMGLER 311

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGSQ 391
               +   +     +   + +    +    A  K+   L +   G  V     G     Q
Sbjct: 312 LVLMLETLELTDVRRSVDVYMVTAGEGTMMAGMKLAELLREQVPGIRVMNHFGGGNFKKQ 371

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           F  AD +G  + +++G   V+D+ V +K  + G +E     +V    +   
Sbjct: 372 FKRADKVGAAVALVLGENEVADNTVVLKDLIGGTQETYGQADVAAKLAELV 422


>gi|42519262|ref|NP_965192.1| histidyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
 gi|46396581|sp|P60916|SYH_LACJO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|41583550|gb|AAS09158.1| histidyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
 gi|329667228|gb|AEB93176.1| histidyl-tRNA synthetase [Lactobacillus johnsonii DPC 6026]
          Length = 428

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 134/422 (31%), Gaps = 19/422 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    + + V +I R    R    E+  P+ ++ +++  S     D   KEM  
Sbjct: 8   GTVDILPGESGSWEKVESIARNFFKRANYREIRTPSFENYEVFSRSSGETSDVVSKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +   +  +     ++  PF+ Y I   FR E        R R
Sbjct: 68  FNDKGGRHIALRPEGTAGVVRAYVENKLYGPDVVKPFSVYYIDNTFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF      +      M           +Y    + LG   +        +  
Sbjct: 125 EFHQIGVESFGSDSPLADVETLMMAHDLLAELGVKNYELHINSLGNAQVREAYHDALVNY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               +  +  D+           +D     +     +   +   ++  +     T     
Sbjct: 185 FTPVKDQLSEDSQRRLSQNPLRILDSKDERDKKFLPNAPKIVDYLDDESRENFKTITDML 244

Query: 265 EKL-FDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           E+L  + + ++  V       G IF F     +L  SAT     G+ +++     G    
Sbjct: 245 EQLGINYVMDDDLVRGLDYYTGIIFEFMVEDKNLWESATTILGGGRYNHLVEEFDGPETP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E             +   +     I            ++   L + G    +D
Sbjct: 305 AVGFGIGEERLMLVLKEQNPDLFQEEGIDFFITNIGAGTEFKAVEVARSLREQGFSAQYD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              +++  QF  AD +     + +G+K + +  + IK    G   D+SLE+ IN      
Sbjct: 365 VDQKKLKQQFRKADRVHATFVITLGAKELENGVLNIKRLSDGKTIDLSLED-INNMQDVI 423

Query: 443 SN 444
           + 
Sbjct: 424 NK 425


>gi|189499024|ref|YP_001958494.1| glycyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
 gi|189494465|gb|ACE03013.1| glycyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
          Length = 488

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 63/464 (13%), Positives = 135/464 (29%), Gaps = 53/464 (11%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNR--TGAIEMSVPTLQSADL 79
           R G I+  S         + + PLG +   N+  +      R     + +    + +  +
Sbjct: 28  RRGFIYPSSEIYGGLSSCFDYGPLGSEMKKNIKDLWWISMTRKHRNIVGIDASIMMNPTV 87

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM-----------TDIFRSHIKSYRNL 128
           W  SG   S+   M+       +        E  +                S+ +S    
Sbjct: 88  WEASGHVSSFNDPMIDDKT-TKRRYRADHLIENHIEKLRRDAKEEDAHRVSSYYESASEA 146

Query: 129 PFTFYQIQLKFRDEL--RPRFGVMRSREFLMKDAYSFDLTPEGSK---------HSYNKM 177
                        E    P  G     E    +          ++          +   +
Sbjct: 147 EDQNRAFYDIIIAEEIKAPDTGSADWTEVRQFNLMFQCNMGALAESSGKVYLRPETAQGI 206

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
           FV++  +     +K     A+ G    +   +   +    E +    + F+      E+ 
Sbjct: 207 FVNFHNVRESSRMKVPFGIAQIGKAFRNEIVKGNFIFRMVEFEQMEMQYFVKPGTQVESF 266

Query: 238 DFDDIISLNSIVEQWT------APYAATSDVHNEKLFDSLPENKRVSARGIEVGHI---F 288
           +       N  +E+          Y      H   L   +          IE  H    F
Sbjct: 267 ESWREERFNWYIERLGITPEKLHWYKHDKLAHYADLAYDIKFEYPFGIEEIEGIHSRTDF 326

Query: 289 YFGTKYSLP-MSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGK--------GI 338
                      +  +      + +   +     G+ R+  A++  S+            +
Sbjct: 327 DLKQHQEFSGKNMEYIDQTTNERYIPYVVETSAGSDRLFLALLCDSYTEDVIDGEQRVMM 386

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            +   +AP K +++ +    +   +   K+   L      V +DD G  IG ++   D +
Sbjct: 387 RFAPKIAPVKAAILPLMKKGE-MGEKAAKLRDEL-ATDFMVQYDDAG-SIGKRYRRQDEI 443

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G P    V    + D  V +++R T  +E + + +V  +   + 
Sbjct: 444 GTPFCFTVDHDSMEDHSVTVRYRDTAKQERIEISKVKEFLGAKL 487


>gi|90579364|ref|ZP_01235174.1| histidyl-tRNA synthetase [Vibrio angustum S14]
 gi|90440197|gb|EAS65378.1| histidyl-tRNA synthetase [Vibrio angustum S14]
          Length = 422

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 56/416 (13%), Positives = 116/416 (27%), Gaps = 24/416 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V   +++  +  G  E+ +P ++S  L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKVEGTVKQVISAYGYNEVRMPIVESTHLFKRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRSREFLM 157
             ++   P            +   Y      +Y     + +   + R R       E   
Sbjct: 75  GDSLTLRPEGTAGCVRAGIQNGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQVGVEVFG 134

Query: 158 KDAYSFDLTPEGSKHSYNKM---FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            +    D           +            + +G            I     H  ++  
Sbjct: 135 LNGPDIDAELIMMTARLWRELGIHEHVRLELNSIGSLEARAEYRKALIAFLEQHLDVLDE 194

Query: 215 DTGETQVFCSKDFMDFPIPS-ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           D            +D    + +    D       +  +    +    ++ +         
Sbjct: 195 DAKRRMYTNPLRVLDTKNSAIQEILVDAPKLSEYLDPESKEHFDGLCELLDAAGIKYQVN 254

Query: 274 NKRVSARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVA 326
            + V         +F       G + ++     + G              + +G  R+V 
Sbjct: 255 ERLVRGLDYYNRTVFEWITESLGAQGTVCGGGRYDGLVEQLGGKATPSVGFAMGLERLVL 314

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +     D         V       + +           EK+   +S  G  V     G 
Sbjct: 315 LMEALEQDEVRRSVDVYVVTAGEGTLAVGM------TLAEKLRTEVS--GLRVMTHFGGG 366

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               QF  AD +G  + +++G   ++++ V +K    G +  M+ +EV    +   
Sbjct: 367 NFKKQFKRADNVGAAVALVLGENEIAENTVVVKDLHGGEQTTMAQDEVAAKLAALI 422


>gi|41615203|ref|NP_963701.1| glycyl-tRNA synthetase [Nanoarchaeum equitans Kin4-M]
 gi|40068927|gb|AAR39262.1| NEQ417 [Nanoarchaeum equitans Kin4-M]
          Length = 512

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 116/358 (32%), Gaps = 38/358 (10%)

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               ++A +   T +       R  I   + LP     +   FR+E+ PR  ++R REF 
Sbjct: 174 KMVENEAYLRPETAQGPYVMFKREFILHRQKLPLGLAVVGKAFRNEISPRQLLLRLREFT 233

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +   F   PE ++   N++    L    + G        +          EF      
Sbjct: 234 QAELQIF-FDPEDNEFDINEVKDVELNFLDKEGNYKRIKVKDLP------FPEFYAY--- 283

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                   + +    IP E   F ++       E+  A Y    + ++  +  + P    
Sbjct: 284 --FVGKVKQFYERLGIPEERLRFRELS------EKEKAFY----NKYHVDIEINFPTYGW 331

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS---- 332
               GI             +         D K     +     G  R V A+I+      
Sbjct: 332 KEVGGIHYRTDHDLSGHMKVSGKDLTVQKDNKKFIPHVLELSFGVDRNVLALIDLFLTEE 391

Query: 333 -----HDGKGIIWPDSVAPFKISLINIKA------HDQVCRDACEKIYARLSKVGCDVFW 381
                 D + +     V      L  IK             +  +++Y  L      + +
Sbjct: 392 EYEIERDNQKVKEKRVVLKIPKHLAPIKVAVFPLLKKPELIEKAKEVYNMLKNYFYPIIY 451

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           D+ G  IG ++   D +G P  + +  + + D+ V I+ R T  +  + +E++ N  +
Sbjct: 452 DEQG-SIGRRYRRVDEIGVPYAITIDYQTLEDNTVTIRDRDTMKQVRVKIEDLPNQLT 508


>gi|302342312|ref|YP_003806841.1| histidyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
 gi|301638925|gb|ADK84247.1| histidyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
          Length = 417

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 114/414 (27%), Gaps = 37/414 (8%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              + A  R   +  G  E+  P L+  +L+V S     D   KEM   ADR    +   
Sbjct: 20  WQFIEATARRVFDCFGFDEIKTPVLEKTELFVRSIGETTDIVEKEMYTFADRGGDMLSLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  +    +  P   + I   FR E   +    R R+F   +        
Sbjct: 80  PEATAGVLRAYVENKLHAQPGPHRLFTIGPMFRRERPQKG---RLRQFHQLNCEVLGDEG 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-----TGETQVF 222
                    M    L     LGL+++ +   S             L+       GE    
Sbjct: 137 PLVDAELLVMLDHLL---KELGLRNVEIVLNSLGCPECRPAFRQALSAFLRGRAGELCPD 193

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-------------KLFD 269
           C +     P+   +   +                      H               K+  
Sbjct: 194 CQRRLERNPLRVLDCKAEGCRQAAQGAPSIAEHLCPACADHLAQVRGMLAAAGVQYKIDP 253

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
            L        R          G + ++     + G          G  G G      A++
Sbjct: 254 KLVRGLDYYVRTTFEALAGDLGAQNAVAGGGRYDGLIQALGGPAEGGVGFGCGLERLALL 313

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            +                    + + A     R    ++  RL + G  V      + + 
Sbjct: 314 LADDPRWRREPA----------LFVAALGAGPRAWAFELTQRLRRAGLRVEMMSQDKSLK 363

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYASHRF 442
           +Q   AD LG    +IVG + ++D   ++K     G +E + L+          
Sbjct: 364 AQMRRADKLGARRALIVGEQELADGVAQLKDMAAAGRQEPLPLDGAFEALRKLI 417


>gi|300864649|ref|ZP_07109507.1| Histidyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
 gi|300337398|emb|CBN54655.1| Histidyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
          Length = 427

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 60/413 (14%), Positives = 112/413 (27%), Gaps = 24/413 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              + AI RE   +    E+  P  +   L+        D  GKEM    D+ D+++   
Sbjct: 21  WQRLEAIAREILAKAAYREIRTPIFEQTSLFERGIGEATDVVGKEMYTFKDKGDRSITLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  +    +      +     FR E        R R+F            
Sbjct: 81  PEGTAGVVRSFIENSLDAQGGLQRLWYTGPMFRYERPQAG---RMRQFHQLGVEVLGTAD 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-----TGETQVF 222
             +             I   LGL ++ +   S     D  +    L D       E    
Sbjct: 138 PRADVEV---IAIATDILKTLGLTNLGLDLNSVGNKEDRQNYRQALIDYLTPYKEELDQD 194

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--- 279
                +  P+   ++       + +            S  H EK+   L +         
Sbjct: 195 SQNRLIRNPLRILDSKNPRTQEIAADAPSILDYLGENSRRHFEKVQQMLTDLGIKYQLNP 254

Query: 280 ---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F        +       G+   +     G     V  A+        
Sbjct: 255 RLVRGLDYYTYTAFEIISDDLGAQATVCGGGRYDGLVKELGGPDTPAVGWAMGLERLILL 314

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                 +        I  +      +     +  +L   G  +  D  G     QF  AD
Sbjct: 315 LQQLQPAPTNTLDFYIVSRGDRAEVQAVL--LAQKLRSFGFSLEIDLSGSAFKKQFGRAD 372

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR---FSNNR 446
             G    +I+G +      V++K   +  +  ++  +++  A        N +
Sbjct: 373 RSGAVACLIIGDEEAESHSVKLKWMASKEQSAIAQSDLLEKAEELRCQIDNIK 425


>gi|253988868|ref|YP_003040224.1| histidyl-tRNA synthetase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780318|emb|CAQ83479.1| histidyl-tRNA synthetase [Photorhabdus asymbiotica]
          Length = 425

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 58/423 (13%), Positives = 121/423 (28%), Gaps = 26/423 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+  P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTAIWQRIENTLKRVLAGYGYSEIRTPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P +          H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FDDRNGESLTLRPENTAGCVRAGIEHGLLYNQEQRVWYI-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
               A  F    P+            +  +     +        S           +   
Sbjct: 126 YQLGAEVFGLQGPDIDAELILMTARWWRELGISEHVTLELNSIGSLEARASYREALVAFL 185

Query: 215 DTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF---- 268
           +  + ++   C +     P+   ++   ++  L +   +      A S  H   L     
Sbjct: 186 EQHKDKLDEDCKRRMYSNPLRVLDSKNPEVQQLLNNAPELFDYLDAESKEHFNSLCALLD 245

Query: 269 ---------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                      L        R +        G + ++     + G    +      +  +
Sbjct: 246 ATGIKYRINQRLVRGLDYYNRTVFEWVTTALGAQGTVCAGGRYDGLV--EQLGGRSTPAV 303

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G    +  ++    +       +            +   Q      E++   L +    +
Sbjct: 304 GFAMGMERLVLLVQEINPAFMAELSVADVYLASFGEGSQQAALILAEQVRDMLPQ--LRL 361

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             +  G     Q   AD  G  + +I+G   +   +V IK   TG ++ +S  E+    +
Sbjct: 362 MMNHGGGNFKKQLGRADKHGAKIALILGEDEIRSGQVAIKDLRTGEQQTLSQGEIAARLA 421

Query: 440 HRF 442
              
Sbjct: 422 ELL 424


>gi|297620023|ref|YP_003708128.1| histidyl-tRNA synthetase [Methanococcus voltae A3]
 gi|297379000|gb|ADI37155.1| histidyl-tRNA synthetase [Methanococcus voltae A3]
          Length = 417

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 130/424 (30%), Gaps = 23/424 (5%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSY 89
           M  +  KG   +LP        +   +RE  +     E+  PT +S DL   ++G  D  
Sbjct: 1   MFQKP-KGTRDFLPSEMLKRKFIAQKLREVFDNYNIKEICTPTFESFDLLCKKTG--DEI 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
             ++    D  D+ M   P     +   F +  K+    P  FY +   FR E       
Sbjct: 58  RSQLFVFKDHGDREMGLRPELTSSVARYFINEFKN-VPKPLKFYYLTNCFRYENPQAG-- 114

Query: 150 MRSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRL-------------GLKSIPM 195
            R REF                    N        I  +                +    
Sbjct: 115 -RYREFWQMGCELIGSNKCTADAEVLNLAIEGLKHINMKYEINIGHLGVLKGVFEEFNLS 173

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD-DIISLNSIVEQWTA 254
             ES  I   +  E I         +   K      I  E  D   +   ++ ++E+   
Sbjct: 174 DDESTQIRRLIDKEDIDGLKEVLNVIESEKGISISNIVFEILDLKGNKEIIDILIEKLQK 233

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              +   + N K      E++ +   GI  G  +Y G  + +  +               
Sbjct: 234 FPKSIEALENLKEILEYVEHEYIINFGIARGLDYYTGMVFEIYGTKEGAKQVCGGGRYDN 293

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                      A       D   +   +     ++  I    +D+       K+  +L +
Sbjct: 294 LIELFEGEPTPAVGFAYGFDRIMLNIEEPEVNEEVIYITTAGNDKELTKESFKLAKKLRE 353

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V  D M  ++      A+ +     +I+G K + +  V IK  ++G +  +  +E+
Sbjct: 354 NSKMVELDLMNRKLNKSLNFANNIKATKVIIIGKKDLENGMVSIKDMVSGEQIQVKSDEL 413

Query: 435 INYA 438
           +NY 
Sbjct: 414 LNYL 417


>gi|169856615|ref|XP_001834964.1| glycine-tRNA ligase [Coprinopsis cinerea okayama7#130]
 gi|116503951|gb|EAU86846.1| glycine-tRNA ligase [Coprinopsis cinerea okayama7#130]
          Length = 653

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/308 (15%), Positives = 92/308 (29%), Gaps = 22/308 (7%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
              +   +         +   + + +              ++         E +  AD  
Sbjct: 328 LGYFIARIYQYLINIGIDPARLRFRQHMGNEMAHYATDCWDAEIQNSYGWTECVGCADRA 387

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE----KLFDSLPE 273
              +    +    P+        + I     V +W       +   +     K  DSL E
Sbjct: 388 AYDLSVHSNKTGTPL-IVRQALKEPIVTEKEVPEWNKKVMGKTFKGDAGILQKHIDSLDE 446

Query: 274 NKRVSARG----------IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +  +G           E G  F    +       TFK    ++    +     G  R
Sbjct: 447 AALIKLKGELAQGSAVVKTEEGKEFTLTPEVLTIERKTFK-QSIREFVPNVIEPSFGLGR 505

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGC 377
           ++  ++E S   +       V      +   K      +  +      ++I A+L K G 
Sbjct: 506 ILYCLLEHSFWAREQDIERGVLSLPPLVAPTKVLIVPLSAREEFDPLVQEITAKLRKAGV 565

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
               DD    IG ++A  D LG P  + +    V +  V I+ R T  +    ++EV+  
Sbjct: 566 FSRVDDSNTSIGKRYARNDELGTPYGLTIDFASVQNRTVTIRERDTMDQRIGKIDEVVAT 625

Query: 438 ASHRFSNN 445
            +   + N
Sbjct: 626 VTDLVNGN 633



 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     N+ +  R+      G +E+    +  + ++  SG    +   M++
Sbjct: 38  AGLYDYGPPGSALQANIISEWRKHFIIEEGMLEVDTTIMTPSAVFETSGHVARFADWMVK 97

Query: 96  LADRND 101
                D
Sbjct: 98  DVKTGD 103


>gi|82777899|ref|YP_404248.1| histidyl-tRNA synthetase [Shigella dysenteriae Sd197]
 gi|309784735|ref|ZP_07679368.1| histidyl-tRNA synthetase [Shigella dysenteriae 1617]
 gi|123755716|sp|Q32D48|SYH_SHIDS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|81242047|gb|ABB62757.1| histidine tRNA synthetase [Shigella dysenteriae Sd197]
 gi|308927105|gb|EFP72579.1| histidyl-tRNA synthetase [Shigella dysenteriae 1617]
          Length = 424

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 117/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPSETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQHLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTSPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|126654927|ref|ZP_01726461.1| histidyl-tRNA synthetase [Cyanothece sp. CCY0110]
 gi|126623662|gb|EAZ94366.1| histidyl-tRNA synthetase [Cyanothece sp. CCY0110]
          Length = 433

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 61/427 (14%), Positives = 119/427 (27%), Gaps = 26/427 (6%)

Query: 37  KGIYSWLP--LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
            G    LP  +G      V +I  +  +R    E+  P  +   L+        D  GKE
Sbjct: 8   PGTRDILPEEIGY--WQYVESIATQILSRAMYYEIRPPIFEQTSLFERGIGEATDVVGKE 65

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M   +DR D+++   P     +   +  +           +     FR E        R 
Sbjct: 66  MYTFSDRGDRSLTLRPEGTAGVVRAYLQNNLYAAGGVQRLWYCGPMFRYERPQAG---RQ 122

Query: 153 REFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           R+F            P                +  +     I    +          E +
Sbjct: 123 RQFHQIGLELIGTADPRADVEVIALATDILKTLGLQSLKLDINSVGDRND--RQRYREAL 180

Query: 212 VLA---DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           V        E            P+   ++       +N             S  H +++ 
Sbjct: 181 VNYFLPYKEELDPDSQDRLQRNPLRILDSKDKRTKEINENAPSILEHLGDASKKHFDQVQ 240

Query: 269 DSLPENKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
             L +            RG++      F    S  + A      G  +   +   G G  
Sbjct: 241 QLLSDLGIEYNINPCLVRGLDYYTHTAF-EMISDDLGAQATVCGGGRYDGLVEELG-GNA 298

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                          ++     +P     I + +  +        +  +L K G  V  D
Sbjct: 299 TPAVGWAIGMERLIILLKQLQSSPEMTPDIYLVSRGEAAEGQGLILAQKLRKEGLTVELD 358

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---INYAS 439
             G   G QF  AD  G    +++G +   +  +++K   +  ++ M+  E+   +    
Sbjct: 359 MSGSAFGKQFKRADRSGAIACIVLGEEEAENKTMQLKWLQSKEQQAMTQAELFTKVGELK 418

Query: 440 HRFSNNR 446
            +   ++
Sbjct: 419 EQLDRHK 425


>gi|76800818|ref|YP_325826.1| glycyl-tRNA synthetase [Natronomonas pharaonis DSM 2160]
 gi|76556683|emb|CAI48255.1| glycine--tRNA ligase [Natronomonas pharaonis DSM 2160]
          Length = 578

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 10/149 (6%)

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSH--------DGKGIIWPDSVAPFKISLINI 354
           +   G+     +     G  R+V +V+  SH        +   +  P  +AP  +++  +
Sbjct: 425 QTEAGEHITPHVVEPSFGVGRLVYSVLVHSHGTDTVDDEERTYLDLPAELAPTTVAVFPL 484

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              D    D   ++   L + G +V +DD G  IG ++   D +G P  V V  +   D 
Sbjct: 485 MTKD-GLDDRAREVSETLREAGFEVAYDDTG-NIGRRYRRQDEVGTPYCVTVDYETQEDG 542

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V I+ R +  +  + +E +    +    
Sbjct: 543 TVTIRERDSTDQTRVPVEGLPAAIAELVD 571



 Score = 60.5 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 24 KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQS 76
          +L  R G           + G Y++ P G     N+  I R+      G +E+  PT+  
Sbjct: 9  ELAKRRGFFFSSNEAYGGTAGFYTYGPEGAALKRNLEDIWRDIFVRELGNMELEAPTVMP 68

Query: 77 ADLWVESGRYDSYGKEMLRLADR 99
            ++  SG  D +   ++   + 
Sbjct: 69 EAVFEASGHLDGFDDMIIECPEC 91


>gi|254225023|ref|ZP_04918637.1| histidyl-tRNA synthetase [Vibrio cholerae V51]
 gi|125622410|gb|EAZ50730.1| histidyl-tRNA synthetase [Vibrio cholerae V51]
          Length = 422

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 61/411 (14%), Positives = 118/411 (28%), Gaps = 16/411 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V  +++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKVEGVVKNVISAYGYSEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFL 156
             ++   P            +   Y      +Y +   FR E       R       E  
Sbjct: 75  GDSLTLRPEGTAGCVRSGIENGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQCGVEVF 133

Query: 157 MKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             D    D           +            + +G         +  I     ++ ++ 
Sbjct: 134 GLDGPDVDAELIMMTARLWRELGIAQHVRLELNSIGSLEARANYRTALIDYLEQYQNVLD 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSLP 272
            D            +D   P       D   L+  ++  +   +A   ++ +    +   
Sbjct: 194 EDCKRRMYTNPLRVLDSKNPDVQAILGDAPQLSDYLDAESKQHFAGLCELLDAAGIEYTV 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             + V         +F      SL    T  G  G  +   +   G      V   +   
Sbjct: 254 NQRLVRGLDYYNRTVFE-WITESLGSQGTVCG--GGRYDGLVEQLGGKPTPAVGFAMGLE 310

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGS 390
                +    +    +   + +    +    A  K+  +L +   G  V     G     
Sbjct: 311 RLVLMMETLGNTDVRRSVDVYMVTAGEGTMMAGMKLAEQLREQVPGLRVMTHFGGGNFKK 370

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           QF  AD +G  + +++G   V+   V +K    G +  +   EV    +H 
Sbjct: 371 QFKRADKVGAAIALVLGEDEVAAQTVVVKDLAGGEQNTVVQAEVAKLLAHL 421


>gi|163783153|ref|ZP_02178147.1| histidyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881487|gb|EDP74997.1| histidyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 405

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 59/397 (14%), Positives = 103/397 (25%), Gaps = 24/397 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V   +R    R    E+  P ++ A ++  S     D   KEM    DR  + +   
Sbjct: 22  FRKVTTTVRAILRRYNYEEIITPVVEYAKVFERSIGEATDIVQKEMFVFEDRKGRLLALR 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  +           +     FR E        R R+F    A  F +  
Sbjct: 82  PEGTAGVVRAYIENKLYALRPYHKLFYEGPMFRYERPQAG---RYRQFHQIGAEVFGVAE 138

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG---ETQVFCS 224
             +     K+    L   +      +        +      E +V    G   E    C 
Sbjct: 139 PHADAELLKLVSDILSELNIPATIELNSLGC--KVCRPAYREALVEYLHGVGEELCKDCI 196

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE------NKRVS 278
                 P+   +              +           H  +L   L E           
Sbjct: 197 DRKDRNPLRVLDCKVQSCQLAVREAPKMVDFLCDECREHYTRLKTYLAELGVKYRENYNL 256

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RG++      F        +A   G        + G     A+     V       +  
Sbjct: 257 VRGLDYYTRTVFEAVSDELGAAVVAGGRYDYLVEEFGGPPTPALGFAVGVERLMLLIEEP 316

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +                      K+   L   G  V +      +  Q   A+ L
Sbjct: 317 EKDYELYFVIPFG--------NVHAYALKVADALRDRGKVVEFSYRKGNLKKQLEFANRL 368

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G    VIVG   + +  V +K   TG ++ + +E ++
Sbjct: 369 GADYAVIVGEDELREGVVSLKDMRTGEQKKLKVENIV 405


>gi|134098086|ref|YP_001103747.1| glycyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|291007455|ref|ZP_06565428.1| glycyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910709|emb|CAM00822.1| glycyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
          Length = 461

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 55/432 (12%), Positives = 124/432 (28%), Gaps = 35/432 (8%)

Query: 40  YSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  DN+     +   Q R   + +    +    +W  SG   ++   ++   
Sbjct: 33  WDYGPLGVELKDNIKRQWWKAVVQGREDVVGLDSSVILPRQVWEASGHVGAFHDPLVECT 92

Query: 98  --------DRNDKAMIYGPTHEEVM-----TDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
                   D   +        E                +     P  F  +   F   + 
Sbjct: 93  SCHHRFRGDHLAEEYAERTGKELAEGDLSEVPCPNCGNRGQFTEPREFNMMLKTFLGPVE 152

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              G+   R    +  +        +        +  +    R  +        +     
Sbjct: 153 SEEGLHYLRPETAQGIFVNFANVMTTARRKPPFGIGQIGKSFRNEITPGNFIFRTREFEQ 212

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                F+   +      +     M +       + +++       ++ +     T D+  
Sbjct: 213 MEMEYFVEPGEDESWHQYWIDQRMSWYT-DLGIEPENLRLYEHPKDKLSHYSKRTVDIEY 271

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              F      +     GI     F   T   +S    + F  A    +   +     G  
Sbjct: 272 RFGFGG---GEWGELEGIANRTDFDLTTHSNHSGVDLSYFDQASKSRYRPYVIEPAAGVG 328

Query: 323 RVVAAVIESSHDGKGIIWPD------SVAPFKISLINIK------AHDQVCRDACEKIYA 370
           R + A +  +                +V      L  +K      + +         +  
Sbjct: 329 RPMMAFLIDAFHEDQAPNAKGGVDERTVLKLDRRLAPVKVAVLPLSRNAELSPKARDLAT 388

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K   ++ +DD G  IG ++   D +G P  V V    ++D  V ++ R T  +E ++
Sbjct: 389 GLRKHW-NIEFDDAGA-IGRRYRRHDEIGTPFCVTVDFDSLTDHAVTVRERDTMAQERVA 446

Query: 431 LEEVINYASHRF 442
           ++++ +Y + R 
Sbjct: 447 MDKLEDYLAVRL 458


>gi|206889416|ref|YP_002249587.1| histidyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|226737080|sp|B5YHK1|SYH_THEYD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|206741354|gb|ACI20411.1| histidyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 420

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 55/413 (13%), Positives = 112/413 (27%), Gaps = 29/413 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIY 106
              ++    R+        E+  P +++A+L++ S     D   KEM    D+  + +  
Sbjct: 19  LWQHIEEHARKILENYNFQEIRTPIVENAELFLRSIGEDTDIVEKEMYVFQDKKGRKVAL 78

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +   +  H       P  FY I   FR E   +    R R+F       F ++
Sbjct: 79  RPEGTASVVRAYIQHNFFNNPPPQKFYYIGPMFRYERPQKG---RFRQFHQIGVECFGVS 135

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIV------LADTG 217
                     M   +L   +   L             P    +   F+         D  
Sbjct: 136 SSWIDAELIYMLKLFLEKLNINNLTYEINSLGCKRCRPQYRKVLFSFLADKVNQLCIDCK 195

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISL-----NSIVEQWTAPYAATSDVHN-EKLFDSL 271
                     +D  +PS      +   +         E + +      +++    +   +
Sbjct: 196 RRFEKNPLRVLDCKVPSCKESLKNTPLIVDFLCQDCKEHFLSLQKELDEMNISYAVNPKI 255

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   R +        G + ++     +             + G          I S
Sbjct: 256 VRGLDYYTRTVFEVTTTMLGAQNAVAAGGRYDDLVELFGGPTTPAAGFAIGMERLIEICS 315

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           +        P     +                  +K+   L               + SQ
Sbjct: 316 NSLLIKPKKPFVYVAYIG---------SSVEKEAKKVVNFLRNNNIPTETAYEKLSLKSQ 366

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              AD +G  + +I+G   +  S    K+   G + + SL E++     ++  
Sbjct: 367 LRKADRVGANIVIIIGEDEIKKSVYIWKNMKDGSQGEASLNELLELIRRKYDT 419


>gi|332701712|ref|ZP_08421800.1| Histidyl-tRNA synthetase [Desulfovibrio africanus str. Walvis Bay]
 gi|332551861|gb|EGJ48905.1| Histidyl-tRNA synthetase [Desulfovibrio africanus str. Walvis Bay]
          Length = 438

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 61/397 (15%), Positives = 122/397 (30%), Gaps = 19/397 (4%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           + A  RE   R G  E+  P L+  +L+     G  D   KEM    D+  +++   P  
Sbjct: 49  LEATAREVFGRYGVSELRTPILEKTELFARGIGGETDVVQKEMYTFEDKGGRSVTLRPEA 108

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   F    +        ++ I   FR E   +    R R+F   +   F       
Sbjct: 109 TAGVVRAFIESGQHAPERVSKYFTIGPMFRYERPQKG---RLRQFHQINCEVFGTDAPHC 165

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                 M  ++L+     GL          E  P       ++    D G+    C +  
Sbjct: 166 DAEVMLMLATFLKSVGLSGLSFEVNSLGCPECRPTFHQRLTDYFSGLDKGKLCADCLRRT 225

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR------G 281
              P+   +        + +   +       +   H + +   L        R      G
Sbjct: 226 ATNPLRVLDCKVAACKDVVAEAPRIDDNLCPSCKTHFDTVLSILDAAGLAYTRNPFLVRG 285

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           ++      F    +   + T     G+   +     G     V  A+             
Sbjct: 286 LDYYQRTTFEVTSTNIGAQTAVAGGGRYDGLVELLGGPKVPGVGFAIGMERLALLLAGRE 345

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            +   F ++++     D+   D    +  +L + G         +   SQ  +A+ LG  
Sbjct: 346 PARKDFYLAVL-----DEKALDQGLLLAQKLRERGLSGEVSFAAKSPKSQLRLANKLGVK 400

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +++G + ++   + +K   TG +  M  E+ +   
Sbjct: 401 TCLLLGGEELAAGTIVVKSLDTGEQTSMPQEQFLATL 437


>gi|291543722|emb|CBL16831.1| histidyl-tRNA synthetase [Ruminococcus sp. 18P13]
          Length = 435

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 57/409 (13%), Positives = 113/409 (27%), Gaps = 29/409 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  + R      G  E+ +PT ++ +L+  S     D   KEM  +  + +      
Sbjct: 22  WYTVEQVARSVAQSYGFREIRIPTFENTELFQRSVGETTDVVQKEMYTVMAK-ETKFTLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P            +      LP   + +   FR E        R REF            
Sbjct: 81  PEGTAGTIRAMLQNGLLNEALPQKVFYLLSCFRHERPQAG---RLREFHQFGLEMAGSAE 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF--CSK 225
             +      +  + L      G++             +         +  + Q+   C  
Sbjct: 138 PVADAEVISLAKAVLDTLGLKGIQLYINSIGCPTCRAEYHKALRAYFEARKDQLCDTCLS 197

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL--------FDSLPENKRV 277
                P+   +        L                 H EKL         D     K V
Sbjct: 198 RLEKNPMRILDCKSPICGELGKDAPVILDYLCEDCKTHFEKLQGYLKAMDIDFSINPKIV 257

Query: 278 SARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                    +F F     G + ++     + G    +         +G    +  ++ + 
Sbjct: 258 RGLDYYTKTVFEFVTTDIGAQGTVCGGGRYDGLI--EELGGQHQPALGFAMGIERLLLTM 315

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                     +          I   D        +    L + G  V +D +G    SQ 
Sbjct: 316 ESQGCDFLEPNHCDLY-----IATMDPEGVSRAMQYANLLRQEGFWVEYDLLGRSFKSQM 370

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-VINYASH 440
             AD +G    +++G   ++     +K+  TG +  + L++  ++  ++
Sbjct: 371 KYADKIGTSYLLVLGENELTTGNANLKNMKTGEQTPLLLDDSFVDSFTN 419


>gi|34762826|ref|ZP_00143812.1| Histidyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|294784988|ref|ZP_06750276.1| histidine--tRNA ligase [Fusobacterium sp. 3_1_27]
 gi|27887528|gb|EAA24612.1| Histidyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|294486702|gb|EFG34064.1| histidine--tRNA ligase [Fusobacterium sp. 3_1_27]
          Length = 413

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 56/397 (14%), Positives = 114/397 (28%), Gaps = 17/397 (4%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + ++         +  P  +  +L+        D   KEM    DR D+++   P +
Sbjct: 24  ISNVAQKMFENYNYNFVKTPIFEETELFKRGIGEATDVVEKEMYTFKDRGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEG 169
              +   +  +    +     FY     FR E        R REF       F + +P+ 
Sbjct: 84  TASLVRCYLENAIYAKEDISRFYYNGSMFRYERPQAG---RQREFNQIGIEVFGEKSPKV 140

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                   +    ++        I       S  +  +   E    +   +    C    
Sbjct: 141 DAEVIAIGYKFLEKLGITDLEVKINSVGSNASRTVYREKLVE-HFKSHLDDMCDDCKDRI 199

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
              P+   +   D                      H E +   L        +  E   +
Sbjct: 200 NRNPLRLLDCKVDKDKDFYKSAPNIIDFLFEDERKHYEDVKKYL---DVFGIKYTEDPTL 256

Query: 288 FYFGTKYSLPMSATFKGADGKDHY-----VQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
                 YS  +        G                    + + AV  ++   + ++   
Sbjct: 257 VRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAVGFATGVERIMMLLG 316

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
              P     + I    +   +   KI   L      V+ D   + + S    AD L    
Sbjct: 317 ENYPKNNPDVYIAWLGENTSETALKIAESLRDNDIKVYIDYSEKGMKSHMKKADKLSVRY 376

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +I+G   ++   V +K   T  ++++ +EE++NY  
Sbjct: 377 CIILGEDELNKGIVLLKDFSTREQKEVKIEEILNYIK 413


>gi|289524208|ref|ZP_06441062.1| proline--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502864|gb|EFD24028.1| proline--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 481

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 69/462 (14%), Positives = 146/462 (31%), Gaps = 78/462 (16%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLM--LRTGMIHQHSK--GIYSWLPLGQKALDNVNAI 56
           M+ ++   P  ++        S   +  ++   +  ++   G     P G    +++ + 
Sbjct: 1   MKMARNITPREKDY-------SQWYLDVIKAAEMADYAPVRGCMVIRPTGYAIWESIQSQ 53

Query: 57  IREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
           + E    TG +    P L  +  L  E+   + +  E   +                   
Sbjct: 54  LDERFKETGHVNAYFPLLIPSSFLEKEAKHVEGFSPECAVVT------------------ 95

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
                                                 E L +       +     H Y+
Sbjct: 96  ----------------------------------YAGGEELEEPLVIRPTSETVIGHMYS 121

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
           K   S+  +   +      +R E  P     + EF+     G T     ++ ++  +   
Sbjct: 122 KWIQSWRDLPILINQWCNVLRWEKRPRLFLRTSEFL--WQEGHTAHATREEALEETLRML 179

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +   +     +   T   +        +   +  E      R ++ G   + G  ++
Sbjct: 180 EV-YRSFMEEVLALPVLTGEKSEGERFPGAENTYTC-EAMMTDKRALQAGTSHFLGQNFA 237

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                 F+  DG+  Y    S+G+ + R++ A+I +  D  G++ P +VAP K  ++ I 
Sbjct: 238 KAFDIRFQNKDGELEYAWTTSWGV-STRLIGAIIMTHADNDGLVLPPNVAPVKTVILPIT 296

Query: 356 AHDQVCRDA----CEKIYARLSK---VGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG 407
               + ++      +KI  RL K       V  D     + G +F      G PL++ +G
Sbjct: 297 PDQNLLQEKILPEAQKILERLKKILGAN-RVILDTQFHMRPGDRFFYHLQKGVPLRLELG 355

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
              +  S +    R TG   ++S + +         N +  L
Sbjct: 356 EAEMKSSHLRAVRRDTGEVVNISFDAIEREVPRLLENIQNTL 397


>gi|296327394|ref|ZP_06869943.1| histidine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296155509|gb|EFG96277.1| histidine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 413

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 60/398 (15%), Positives = 116/398 (29%), Gaps = 19/398 (4%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + ++     G   +  P  +  +L+        D   KEM    DR D+++   P +
Sbjct: 24  ISNVAQKMFENYGYNFVKTPIFEETELFKRGIGEATDVVEKEMYTFKDRGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEG 169
              +   +  +    +     FY     FR E        R REF       F + +P+ 
Sbjct: 84  TASLVRCYLENAIYAKEEISRFYYNGSMFRYERPQAG---RQREFNQIGLEVFGEKSPKV 140

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPM---RAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                   +    ++        I     +A        L   F    D  +    C   
Sbjct: 141 DAEVIAIGYKFLEKLGITDLEVKINSVGSKASRTVYREKLIEHFKSHLD--DMCEDCRDR 198

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
               P+   +   D                      H + +   L        +  E   
Sbjct: 199 INRNPLRLLDCKVDGEKDFYKSAPSIIDYLFEDERKHYDDVKKYL---DVFGIKYTEDPT 255

Query: 287 IFYFGTKYSLPMSATFKGADGKDHY-----VQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +      YS  +        G                    + + AV  ++   + ++  
Sbjct: 256 LVRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAVGFATGVERIMMLL 315

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           +   P     + I    +   +   KI   L      V+ D   + + S    AD L   
Sbjct: 316 EENYPKNTPDVYIAWLGENTSETALKIAESLRDNDIKVYIDYSEKGMKSHMKKADKLETR 375

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             VI+G   ++   V +K   T  ++++ +EE+INY  
Sbjct: 376 YCVILGEDELNKGIVLLKDFSTREQKEIKIEEIINYIK 413


>gi|37678951|ref|NP_933560.1| histidyl-tRNA synthetase [Vibrio vulnificus YJ016]
 gi|161501850|ref|NP_759422.2| histidyl-tRNA synthetase [Vibrio vulnificus CMCP6]
 gi|320157273|ref|YP_004189652.1| histidyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
 gi|31340443|sp|Q8DEZ9|SYH_VIBVU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|39932021|sp|Q7MNF0|SYH_VIBVY RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|37197693|dbj|BAC93531.1| histidyl-tRNA synthetase [Vibrio vulnificus YJ016]
 gi|319932585|gb|ADV87449.1| histidyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
 gi|319999067|gb|AAO08949.2| histidyl-tRNA synthetase [Vibrio vulnificus CMCP6]
          Length = 422

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 62/412 (15%), Positives = 121/412 (29%), Gaps = 16/412 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        +   ++   +  G  EM +P ++   L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWQKLEGAVKNVISAYGYNEMRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFL 156
             ++   P            +   Y      +Y +   FR E       R       E  
Sbjct: 75  GDSLTLRPEGTAGCVRAGIENGLLYNQEQRVWY-MGPMFRHERPQKGRYRQFHQCGVEVF 133

Query: 157 MKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             +    D           +            + +G         +  I     H  ++ 
Sbjct: 134 GLNGPDVDAELIMMTARLWRELGIDKHVRLELNSIGSLEARANYRTALIAFLEQHIDVLD 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE-QWTAPYAATSDVHNEKLFDSLP 272
            D            +D   P       D   L+  ++ + T  +A   ++ +    +   
Sbjct: 194 EDCKRRMHTNPLRVLDTKNPDVQAILGDAPRLSDYLDPESTQHFAGLCELLDAAGIEYTV 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             + V         +F      SL    T  G  G  +   +   G  A   V   +   
Sbjct: 254 NERLVRGLDYYNRTVFE-WITESLGSQGTVCG--GGRYDGLVEQLGGKATPAVGFAMGLE 310

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGS 390
                +   +     +   + +    +    A  K+  ++ +   G  V     G     
Sbjct: 311 RLVLMLETLELTDVRRSVDVYVVTAGEGTMMAGMKLAEQVREAIPGVRVMNHFGGGNFKK 370

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           QF  AD +G  + +++G   V+D+ V +K    G +   S +E+ +  +   
Sbjct: 371 QFKRADKVGAVVALVLGENEVADNTVVLKDLAGGEQVTYSQQEIASKIAELI 422


>gi|227890124|ref|ZP_04007929.1| histidyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
 gi|227849299|gb|EEJ59385.1| histidyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
          Length = 428

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 134/422 (31%), Gaps = 19/422 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    + + V +I R    R    E+  P+ ++ +++  S     D   KEM  
Sbjct: 8   GTVDILPGESGSWEKVESIARNFFKRANYREIRTPSFENYEVFSRSSGETSDVVSKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +   +  +     ++  PF+ Y I   FR E        R R
Sbjct: 68  FNDKGGRHIALRPEGTAGVVRAYVENKLYGPDVVKPFSVYYIDNTFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF      +      M           +Y    + LG   +        +  
Sbjct: 125 EFHQIGVESFGSDSPLADVETLMMAHDLLAELGVKNYELHINSLGNAQVREAYHDALVNY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               +  +  D+           +D     +     +   +   ++  +     T     
Sbjct: 185 FTPVKDQLSEDSQRRLSQNPLRILDSKDERDKKFLPNAPKIVDYLDDESRKSFKTITDML 244

Query: 265 EKL-FDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           E+L  + + ++  V       G IF F     +L  SAT     G+ +++     G    
Sbjct: 245 EQLGINYVMDDDLVRGLDYYTGIIFEFMVEDKNLWESATTILGGGRYNHLVEEFDGPETP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E             +   +     I            ++   L + G    +D
Sbjct: 305 AVGFGIGEERLMLVLKEQNPDLFQEEGIDFFITNIGAGTEFKAVEVARSLREQGFSAQYD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              +++  QF  AD +     + +G+K + +  + IK    G   D+SLE+ IN      
Sbjct: 365 VDQKKLKQQFRKADRVHATFVITLGAKELENGVLNIKRLSDGKIIDLSLED-INNMQDVI 423

Query: 443 SN 444
           + 
Sbjct: 424 NK 425


>gi|159488381|ref|XP_001702190.1| hypothetical protein CHLREDRAFT_82920 [Chlamydomonas reinhardtii]
 gi|158271299|gb|EDO97121.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 695

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 8/169 (4%)

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
            G  F            T +   GK +   +     G  R++  + E  +  +      +
Sbjct: 508 DGQTFEIKAGMVEIKKVT-EKVTGKTYTPSVIEPSFGIGRIMYCMFEHCYYTREGDETRA 566

Query: 344 VAPFKISLINIKA------HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           V  FK  +   KA            D   K+   L+  G     D  G  IG ++A  D 
Sbjct: 567 VMGFKPVVAPTKATVFPLVQKPALNDLAAKLSRELTAAGLSNLIDTTGNTIGKRYARTDE 626

Query: 398 LGFPLQVIVGSKFVS-DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +G P  V V  + V  D  V ++ R +  +  +   EV         + 
Sbjct: 627 IGVPFAVTVDFQSVEGDGSVTLRERDSMTQVRVPASEVAGVVRDLVDDR 675



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G Y + P G     N+  + R         +E+  P +    +   SG  D +   M+ 
Sbjct: 104 AGFYDYGPPGCAIKQNMTQVWRTHFVLEENMLEVECPAVTPEVVLKASGHVDRFTDFMVT 163


>gi|160903235|ref|YP_001568816.1| histidyl-tRNA synthetase [Petrotoga mobilis SJ95]
 gi|160360879|gb|ABX32493.1| histidyl-tRNA synthetase [Petrotoga mobilis SJ95]
          Length = 421

 Score = 99.8 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 58/407 (14%), Positives = 106/407 (26%), Gaps = 19/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKEMLRLADRNDKAM 104
            + +    ++     G  E+  P ++  +L+      E+   D   KEM    D+  +++
Sbjct: 21  WEYIENTAKKLFKIYGYKEIRTPLIEKTELFSRGIGQET---DIVQKEMYTFDDKKGRSL 77

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD 164
              P     +   +  +       P   + +   FR E        R REF    A  F 
Sbjct: 78  TLRPEGTASVARAYIENSLITFGSPQKLFYMGPMFRYEKPQAG---RYREFYQIGAEIFG 134

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
                +          +         K       +     +   E +           C 
Sbjct: 135 TDHPLADAELITFVYDFFNKLKLSNFKVKINNIGTFE-SREKYKEVLKTYYQPLLPNLCE 193

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS-DVHNEKLFDSLPENKR------V 277
                F           I    +        Y       H E L   L            
Sbjct: 194 DCQRRFNTNIMRLLDCKIDVEAAKNAPSILDYLDEESREHFENLQKYLKAYNVPFQVDPK 253

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RG++      F  ++S           G+   +     G     V  A+         
Sbjct: 254 IVRGLDYYTKTAFEVEHSDLGEQAVVAGGGRYDDLVEQLGGPKTPGVGFAIGIERVIEAL 313

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                 V       + I    +    A   +   L K G + F +     +  QF  A+ 
Sbjct: 314 KKENVEVESESEIDVYIAFQGEKGEMAAVTLSKELRKKGINTFLNISKRNLSGQFKHANR 373

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           L     V++G + +S   V IK+  +G +  +    V      +   
Sbjct: 374 LNAKYVVVIGEEEISRDIVTIKNMKSGEQTQIERNWVSEIIVEKLRE 420


>gi|115969223|ref|XP_001192584.1| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative), partial [Strongylocentrotus
           purpuratus]
          Length = 185

 Score = 99.8 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 60/140 (42%), Positives = 88/140 (62%), Gaps = 1/140 (0%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
            +AL+ +  +I  E  + G  ++++P +  + LW  SGRY  YG E++ L DR++     
Sbjct: 1   MRALEKLIKVIDTEMQKVGGQKIAMPGMTPSSLWKTSGRYSDYGPELITLQDRHNVDYCL 60

Query: 107 GPTHEEVMTDIFRSHI-KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           GPTHEE +TDI       S++ LP   YQI  KFRDE+RPR+G++R REFLMKD Y+FD 
Sbjct: 61  GPTHEEAVTDIVAGEKTLSHKRLPIKLYQITNKFRDEMRPRYGLLRGREFLMKDLYTFDS 120

Query: 166 TPEGSKHSYNKMFVSYLRIF 185
             EG++ +Y  +  +Y RIF
Sbjct: 121 NLEGAEETYRSVCEAYQRIF 140


>gi|209694319|ref|YP_002262247.1| histidyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
 gi|208008270|emb|CAQ78415.1| histidyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
          Length = 424

 Score = 99.8 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 60/417 (14%), Positives = 117/417 (28%), Gaps = 26/417 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V   ++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 17  LPTQSPLWHKVEDSVKRVISAYGYSEIRMPIVEQTHLFKRAIGEVTDVVEKEMYTFDDRN 76

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFL 156
             ++   P            +   Y      +Y +   FR E       R       E  
Sbjct: 77  GDSLALRPEGTAGCVRAGIENGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQVGVEVF 135

Query: 157 MKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             +    D           +            + +G            I     H  I+ 
Sbjct: 136 GLNGPDVDAELIMMTARLWRELGIDKHVHLELNSIGSLEARANYRVVLIEFLEQHLDILD 195

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDSLP 272
            D            +D   P+      D   L+  ++    A ++   ++ +        
Sbjct: 196 EDCKRRMYTNPMRVLDTKNPAVQAILGDAPKLSEYLDDDSKAHFSGLCELLDAAGIQYQV 255

Query: 273 ENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             + V         +F       G + ++     + G   +    +  + G         
Sbjct: 256 NERLVRGLDYYNRTVFEWVTESLGAQGTVCAGGRYDGLVEQLGGKETSAVGFAMGLERLV 315

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMG 385
           ++  + +   +     +         +         A  K+  RL +   G  V     G
Sbjct: 316 LLMETLELTDVRRSVDIYMVTSGADTLM--------AGMKLAERLREQVPGLRVMCHFGG 367

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
                QF  AD  G  + +I+G   V++  V +K   TG +E  +  +V    +   
Sbjct: 368 GNFKKQFKRADNAGAAVALILGESEVAELTVNVKDLRTGEQETFAQADVFAKLAELI 424


>gi|229584291|ref|YP_002842792.1| glycyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
 gi|228019340|gb|ACP54747.1| glycyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
          Length = 484

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 52/446 (11%), Positives = 115/446 (25%), Gaps = 53/446 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            G   WLP G      +         +       M   T+    ++  SG   ++   ++
Sbjct: 41  SGFIDWLPPGAMLRQKIIDSWINFFIKKIPNIFLMDGSTILPLSVFEASGHLANFTDPVI 100

Query: 95  RL--------------------------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +                            D  D+ +         +T      I +    
Sbjct: 101 KCPKCSNTYRVDHLLKETNGKLICPRDLTDLKDQEIKQKSLM-LELTVGLADEINAALRP 159

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV-SYLRIFHR 187
                        +           +                +           L     
Sbjct: 160 ETAQNIYINFMNFKAIGLKLPFAIAQIGRSYRNEISPRGSRLREFVQMEIEEFVLPFHLN 219

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTG------ETQVFCSKDFMDFPIPSENTDFDD 241
                  ++    PI  +     + L +          ++          + +E     +
Sbjct: 220 SHPLYDNVKGIRLPIFYEEQTIKMELNEAVKKGLVPNIRLAFWIGREWQWLTNELGLPGN 279

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I    +  +  A Y+  +      + D   E    + R      +       S    A 
Sbjct: 280 KIRFRIVPSEERAFYSKGTVDVEVNMEDDWVEIIGNAYRTDYDLTVH------SKHSGA- 332

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------ 355
                       +     G  R+  AV+  ++D         +      +  ++      
Sbjct: 333 --NLSENGTIPHVIEPSFGLDRIAIAVLLLNYDPNPSDRNWPLFRIPYKIAPLEIGIASI 390

Query: 356 AHDQVCRDACEKIYARLSKVGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            H     +  EK+   L  +        + G +I +Q+A AD LG PL + + SK + ++
Sbjct: 391 HHSDEYINIAEKVDLILRSLDYVTFKLFERG-KIDAQYAKADTLGIPLVITIDSKTLEEN 449

Query: 415 KVEIKHRLTGIREDMSLEEVINYASH 440
            V I++R T  +  +++ E+     +
Sbjct: 450 TVTIRNRDTKAQIRVNIGEIAQAVKN 475


>gi|304398584|ref|ZP_07380456.1| histidyl-tRNA synthetase [Pantoea sp. aB]
 gi|304353795|gb|EFM18170.1| histidyl-tRNA synthetase [Pantoea sp. aB]
          Length = 424

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 59/423 (13%), Positives = 117/423 (27%), Gaps = 25/423 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +  ++++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTALWQRIEGVLKQTLASYGYSEIRLPLVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMR 151
             DRN +++   P            H   Y      +Y +   FR E       R     
Sbjct: 70  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWY-MGPMFRYERPQKGRYRQFYQI 128

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             E         D         + K            + +G            +     H
Sbjct: 129 GVEVFGLQGPDIDAELIMLNARWWKALGISEHVRLELNSIGSLEARAHYRDALVAFLEQH 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-----EQWTAPYAATSDV- 262
           + ++  D            +D          +D   L   +     E ++   A   D  
Sbjct: 189 KEVLDEDCKRRMYSNPMRVLDSKNSDVQQLLNDAPQLGDYLDDESREHFSGLCALLDDAG 248

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +  +   L        R +        G++ ++     + G   +       + G    
Sbjct: 249 ISYTVNQRLVRGLDYYNRTVIEWVTDSLGSQGTVCGGGRYDGLVEQLGGRATPAVGFAMG 308

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVF 380
                ++                P     + + A  Q  + A  ++  +L        + 
Sbjct: 309 MERLVLLV-------QAVNPEFEPTSNVDVYVIASGQGVQSAAMQLAEKLRDEAPELRLM 361

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +  G     QFA AD  G  + +++G   V   +V IK    G ++ +   E       
Sbjct: 362 TNFGGGNFKKQFARADKWGARVALVLGEDEVKAGQVVIKDLRRGEQQTLDQAEAAAVLRT 421

Query: 441 RFS 443
              
Sbjct: 422 LLQ 424


>gi|268319357|ref|YP_003293013.1| hypothetical protein FI9785_874 [Lactobacillus johnsonii FI9785]
 gi|262397732|emb|CAX66746.1| hisS [Lactobacillus johnsonii FI9785]
          Length = 428

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 68/422 (16%), Positives = 135/422 (31%), Gaps = 19/422 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    + + V +I R    R    E+  P+ ++ +++  S     D   KEM  
Sbjct: 8   GTVDILPGESGSWEKVESIARNFFKRANYREIRTPSFENYEVFSRSSGETSDVVSKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +   +  +     ++  PF+ Y I   FR E        R R
Sbjct: 68  FNDKGGRHIALRPEGTAGVVRAYVENKLYGPDVVKPFSVYYIDNTFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF      +      M           +Y    + LG   +        +  
Sbjct: 125 EFHQIGVESFGSDSPLADVETLMMAHDLLAELGVKNYELHINSLGNAQVREAYHDALVNY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVH 263
               +  +  D+           +D     +     +   +   ++  +   +   +D+ 
Sbjct: 185 FTPVKDQLSEDSQRRLSQNPLRILDSKDERDKKFLPNAPKIVDYLDDESRENFKIITDML 244

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +   + + ++  V       G IF F     +L  SAT     G+ +++     G    
Sbjct: 245 EQLGINYVMDDDLVRGLDYYTGIIFEFMVEDKNLWESATTILGGGRYNHLVEEFDGPETP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E             +   +     I            ++   L + G    +D
Sbjct: 305 AVGFGIGEERLMLVLKEQNPDLFQEEGIDFFITNIGAGTEFKAVEVARSLREQGFSAQYD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              +++  QF  AD +     + +G+K + +  + IK    G   D+SLE+ IN      
Sbjct: 365 VDQKKLKQQFRKADRVHATFVITLGAKELENGVLNIKRLSDGKTIDLSLED-INNMQDVI 423

Query: 443 SN 444
           + 
Sbjct: 424 NK 425


>gi|300920669|ref|ZP_07137080.1| histidyl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300412350|gb|EFJ95660.1| histidyl-tRNA synthetase [Escherichia coli MS 115-1]
          Length = 424

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/421 (13%), Positives = 119/421 (28%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNK---MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +   +F       + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGIFEHVTLELNSIGSLEARANYRDALVTFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|261403411|ref|YP_003247635.1| histidyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
 gi|261370404|gb|ACX73153.1| histidyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
          Length = 414

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 131/415 (31%), Gaps = 29/415 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL-WVESGRYDSYGKEMLRL 96
           G   +LP   K    V   +RE   R G  E+  PT +S +L   ++G  +   K++   
Sbjct: 7   GTRDFLPEEMKKRRFVENKLREVFERYGYDEILTPTFESFELIAKKTG--EEIRKQLYVF 64

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   + M   P     +   + + +K+    P   Y     FR E        R REF 
Sbjct: 65  KDHGGREMALRPEMTSPVVRFYLNELKN-LQKPLRLYYFANCFRYERPQAG---RFREFW 120

Query: 157 MKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRL-------GLKSIPMRAESGPIGGDLSH 208
                              N      + I           G+    +   +     ++  
Sbjct: 121 QMGCELIGCKNAIADAEVLNLAMDGLINIGLDFDVHIGHLGVLKGVLEEFNVSEEEEVKI 180

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-----PYAATSDVH 263
             ++  +  E         +         +         I+++        P +  +  +
Sbjct: 181 RRLIDKEDYENLEIYLTQILGEEKKELIFEILKFKGGKEILDELKEILKDFPKSVEAVNN 240

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E++ + +  +K +   GI  G  +Y G  +                         G + 
Sbjct: 241 LEEILEFVIHDKYIINFGIARGLDYYTGMVF-EIYGKKGAKQICGGGRYDNLIETFGNIS 299

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           V A       D   +   D     +  L+     D+        I  +L K G  V +  
Sbjct: 300 VPAVGFAYGFDRIMMNIDDLEIEEEKILVIPVKKDKELIKESLLIANKLRKAGKIVEF-- 357

Query: 384 MGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             E +G +   A    +  GF   +IVG K +++ K+ +K  +TG ++ + + ++
Sbjct: 358 --EIMGRKLRKALDYANSKGFKKVIIVGEKELNEGKITLKDMITGEQKLVDITDL 410


>gi|256830601|ref|YP_003159329.1| histidyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
 gi|256579777|gb|ACU90913.1| histidyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
          Length = 417

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 65/407 (15%), Positives = 128/407 (31%), Gaps = 29/407 (7%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMI 105
                +  + R+     G  E+ VP L+  +L+  S     D   KEM   ADR  +++ 
Sbjct: 19  TVHTLMENLARQVFGTYGCQEVRVPILEKTELFARSIGEETDVVQKEMYTFADRKGRSLT 78

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P     +   F    +         +     FR E   +    R R+F   D      
Sbjct: 79  MRPEATAGVLRAFIESGQCGAEGTTKLFACGPMFRYERPQKG---RLRQFHQLDVEVLGT 135

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHEFIVLADTGET 219
               +      M  ++L    +LGLK++ +   S       P+      +F+   D  + 
Sbjct: 136 DAPQADAEVVLMLWTFL---TKLGLKNLGLELNSLGCPECRPVFHQRLRDFLATIDHTQL 192

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
              C +     P+   +       SL               D H  ++ D L   K    
Sbjct: 193 CEDCKRRAQTNPLRVLDCKVPACKSLVENAPSIAESLCPGCDEHFAQVRDILDSAKLPYR 252

Query: 280 ------RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 RG++      F        + T     G+   +     G          I  + 
Sbjct: 253 LNDRLVRGLDYYQRTTFEVVSGEIGAQTAVAGGGRYDGLIKQLGGPDLP-----GIGFAC 307

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC--DVFWDDMGEQIGSQ 391
             + +      A        +   D    +    +  R+ + G   +V ++     I +Q
Sbjct: 308 GMERLALLYGQAQIPAPDFYLAVLDSRALNTALLLAQRMRERGFSGEVSFEAR--SIKAQ 365

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              A+ LG    +I+G   +   ++ +K   TG+++++  +++    
Sbjct: 366 MRQANKLGVKTCLILGQDEMEKGQIVVKDMATGVQKNIGQDDLEQAL 412


>gi|218246037|ref|YP_002371408.1| histidyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|226737067|sp|B7K2B6|SYH_CYAP8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|218166515|gb|ACK65252.1| histidyl-tRNA synthetase [Cyanothece sp. PCC 8801]
          Length = 429

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/428 (14%), Positives = 118/428 (27%), Gaps = 26/428 (6%)

Query: 37  KGIYSWLP--LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
            G    LP  +G      V  I  E  +R    E+  P  +   L+        D  GKE
Sbjct: 8   PGTRDILPEEIGY--WQYVETITTEILSRAMYQEIRAPIFEQTSLFERGIGEATDVVGKE 65

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    DR D+++   P     +   +  +           +     FR E        R 
Sbjct: 66  MYTFKDRGDRSVTLRPEGTAGVVRAYLQNNLYATGGVQRLWYQGPMFRYERPQAG---RQ 122

Query: 153 REFLMKDAYSF-DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           R+F            P               ++  +     +    +          E +
Sbjct: 123 RQFHQIGLELLGSGDPRADVEVIALATDILKKLGLQSLKLDLNSVGDRND--RQRYREAL 180

Query: 212 VLA---DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           V        E            P+   ++       +N             S  H +++ 
Sbjct: 181 VNYFLPYKNELDPDSQDRLERNPLRILDSKNQRTKEINQNAPSILQYLGDQSKKHFDQVQ 240

Query: 269 DSLPENKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
             L +            RG++      F  + S  + A      G  +   +   G G  
Sbjct: 241 QLLTDLNISYQLNPCLVRGLDYYTHTAFEIQ-SDDLGAQATVCGGGRYDGLVAELG-GPD 298

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                          ++      P  +  I I +  +        +  +L   G  V  D
Sbjct: 299 TPAVGWAIGMERLIILLKQRQTVPHCVPDIYIVSKGEQAEAQALILAQKLRFEGLTVELD 358

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA---S 439
             G   G QF  AD  G    +++G +      +++K   T  +E +   ++++      
Sbjct: 359 LSGSAFGKQFKRADRSGAIACIVLGDEEAGTQTLQLKWLATKQQETLDQTQLVSEIGELK 418

Query: 440 HRFSNNRP 447
            + + ++ 
Sbjct: 419 AQLARHKQ 426


>gi|308811795|ref|XP_003083205.1| putative prolyl-tRNA synthetase [Oryza sativa (ISS) [Ostreococcus
           tauri]
 gi|116055084|emb|CAL57480.1| putative prolyl-tRNA synthetase [Oryza sativa (ISS) [Ostreococcus
           tauri]
          Length = 553

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 11/182 (6%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G     G  ++     TF    G+  YV   S+G+ + R+V  +I + 
Sbjct: 284 EAMMGDKKALQAGTSHNLGDNFAKAFDTTFLNDQGETKYVHQSSWGV-STRLVGGIIMTH 342

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGCDVFWD-DMGEQI 388
            D  G+  P  +AP ++ ++ I   D        + + I + L   G     D D  +  
Sbjct: 343 GDDAGLTLPPKLAPIQVVVVPIWKKDAEKDEVMASVDGIISTLEGAGVRTHLDADQSKSP 402

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLE--EVINYASHRF 442
           G +F   ++ G P+++ VG K V+     I  R      G    +S+E   +        
Sbjct: 403 GWKFNQYEMKGVPIRIEVGPKDVAKGACVIARRDVPGKEGKEFGVSVEPAALEAKIKGVL 462

Query: 443 SN 444
            +
Sbjct: 463 DD 464



 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 6/143 (4%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDK 102
           P G    + +   +      TG      P L     +  E+   + +  E+  +     K
Sbjct: 110 PYGYAIWEGIQKYMDARFKETGVQNAYFPQLIPYSFITKEASHVEGFSPELALVTKGGGK 169

Query: 103 AMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            +       PT E ++ ++    I+SYR+LP    Q     R E+R R   +R+ EFL +
Sbjct: 170 DLEEPLVVRPTSETIVNNMMSQWIQSYRDLPMLLNQWCNVHRWEMRTRP-FIRTLEFLWQ 228

Query: 159 DAYSFDLTPEGSKHSYNKMFVSY 181
           + ++   T E ++    +M   Y
Sbjct: 229 EGHTAHATAEEAEAKAMEMIRVY 251


>gi|225679653|gb|EEH17937.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 551

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 27/190 (14%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-------------------KGADGK 308
                EN   +   IE+ H F+ GT+YS  ++A+                    + +   
Sbjct: 355 CSKCGENSVETHTAIELAHTFHLGTRYSEVLNASVAIPSSILRGSLTTERTALAQSSSTV 414

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              ++MG +GIG  R++AAV ++  D KG+ WP            I   D+      E++
Sbjct: 415 SVPLEMGCHGIGVSRMIAAVADTLADPKGLNWP----RVISPFDVIIISDRELEKEAEQV 470

Query: 369 YARL---SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           Y  L    K   D   DD  + +  +   ADL+G+P+ +++G  +  DSK+EI+ R    
Sbjct: 471 YDTLMESRKADVDAIIDDREKSLAWKLRDADLIGYPVIIVIGKLWKRDSKLEIQCRRLEN 530

Query: 426 -REDMSLEEV 434
            RE +SL+++
Sbjct: 531 FRETVSLQDL 540



 Score = 54.0 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 57/99 (57%)

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                 +  K+RDE RPR G++R REF+MKD Y+FD + E +  +YN +  +Y+R+F+ L
Sbjct: 76  DKHMRTLGRKYRDEPRPRQGLLRGREFMMKDLYTFDYSAEKAIETYNAVKEAYIRLFNEL 135

Query: 189 GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            L  I   A+SG +GG LSHEF +    GE  +      
Sbjct: 136 KLPYIVAAADSGNMGGSLSHEFHLPNSKGEDTIVSCSSC 174



 Score = 43.2 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           G++  LPLG +  + +  +I +     G
Sbjct: 55 SGVFHLLPLGLRVQEKLERLIDKHMRTLG 83


>gi|161527575|ref|YP_001581401.1| glycyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
 gi|160338876|gb|ABX11963.1| glycyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
          Length = 485

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 70/465 (15%), Positives = 139/465 (29%), Gaps = 67/465 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G + + P G    +    + R E  R  G +E+    + S  ++  SG   ++   +++
Sbjct: 28  AGFWEYGPTGVGLKNKFLELWRRELIRRDGMLEIDGSQIMSKSVFEASGHLGNFADPIIK 87

Query: 96  LA--------DRNDKAMIYGPTHEEVMTDIFRSH-IKSYRNLPFTFYQIQLKFRDELRPR 146
                     DR    +      E    + F +   ++    P             +  R
Sbjct: 88  CTKCNSTFRADRTIAELTQIEIPESADLEEFDNAISQNNIKCPKCKGDFDKTKNFNMMFR 147

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G+    E       +           Y  M         ++G       A    +    
Sbjct: 148 VGIGPEEEEAYLRPETCQSIFVDFPRLYKTMRGKLPLGIAQVGKSFRNEIAPRQSLLR-- 205

Query: 207 SHEFIVLADTGETQVFCSKDFMDF-----------------PIPSENTDFDDIISLNSIV 249
             EF       E +VFC+   +D                    P E T  + I S     
Sbjct: 206 LREFY----QAEIEVFCNPSKLDEVEKFTEVQDTVIRVQTDSEPVEMTCKEAIESGTVPN 261

Query: 250 EQ-------WTAPYAATSDVHNEKLFDSLPENKRVSA------------RGIEVGHIFYF 290
           +         T  Y  T    ++  F  L E ++                G        +
Sbjct: 262 KFVAYYLGILTEFYEKTGIDISKSRFRKLGEKEKAFYAEVAFDFEVETTIGWLELVACNY 321

Query: 291 GTKYSLPMSATFKGADGKDHY------VQMGSYGIGAMRVVAAVIES------SHDGKGI 338
            + Y L   A       +           +    +G  R +  ++E        H+   +
Sbjct: 322 RSDYDLSSHANKSKEKFEIMDGDDKVLPHVFEISMGIDRSLYTILEHSLKDDKEHERIVL 381

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +AP  + ++++   D   ++  ++IY  + +   D F D  G  IG ++   D +
Sbjct: 382 SLKPYLAPTHVGILSLVKKD-GLKEKTDEIYLSIKRK-FDAFLDHSGA-IGRRYRRLDEI 438

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  V V  + + D  V I+ R +  +  + + ++ +      S
Sbjct: 439 GAPFAVTVDHQTLEDDTVTIRKRDSMEQSRVKISDMDSILLESVS 483


>gi|117919679|ref|YP_868871.1| histidyl-tRNA synthetase [Shewanella sp. ANA-3]
 gi|166228616|sp|A0KUJ6|SYH_SHESA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|117612011|gb|ABK47465.1| histidyl-tRNA synthetase [Shewanella sp. ANA-3]
          Length = 425

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/417 (14%), Positives = 121/417 (29%), Gaps = 16/417 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        V A++R      G  E+  P +++ DL+  S G   D   KEM  
Sbjct: 10  GMNDILPTQSPLWQKVEAVLRASVAAYGYSEIRTPIVENTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y +   FR E   +    +  +F
Sbjct: 70  FEDRNGDSLTLRPEGTASTVRAGNEHGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQF 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            ++         +      +                 + LG  +         I     H
Sbjct: 129 GVEVYGIGSADIDAEVLMLSARLWEKLGISEHVTLELNTLGDPAERAAYREALIAFLEQH 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKL 267
           +  +  D+           +D   P   +   D  +L   + E+ +  +A   ++ +   
Sbjct: 189 KDKLDEDSQRRMYSNPLRVLDSKDPQVQSILADAPALMDYLGEESSQHFAQLRELLDAVG 248

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                  + V         +F      SL    T       D  V             A 
Sbjct: 249 IQYRVNPRLVRGLDYYNRTVFE-WVTNSLGSQGTVLAGGRYDGLVAQLGGKDTPAVGFAM 307

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMG 385
            +E        +      P  + +      D    +   K+   L        V     G
Sbjct: 308 GLERIVLLLETLELTQDIPAAVDVYVAAMGDSCLVE-AIKVAQELRSTLPTLRVMSHCGG 366

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHR 441
                Q   AD  G  + +++G + +++  V +K+ R    ++ ++   +  + +  
Sbjct: 367 GNFKKQIKRADKSGAQVALLIGEEELAEGVVTVKYLRNDNEQQRVARNALSAFLAEL 423


>gi|320530172|ref|ZP_08031242.1| histidyl-tRNA synthetase [Selenomonas artemidis F0399]
 gi|320137605|gb|EFW29517.1| histidyl-tRNA synthetase [Selenomonas artemidis F0399]
          Length = 421

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/405 (13%), Positives = 107/405 (26%), Gaps = 15/405 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
             +V  +IR   +R G  E+  P  +  +L+        D   KEM    DR D+++   
Sbjct: 20  WTHVERVIRGLCDRYGYKEIRTPHFEHTELFQRGIGDGTDVVDKEMYTFTDRGDRSLTLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P +       +  H           + I   FR +      +    +F ++     + +P
Sbjct: 80  PENTAAAIRAYLEHKFYADGGLQKLFYIGSMFRYDRPQAGRMREFHQFGVEAVG--EESP 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT---GETQVFCS 224
                           +        +       P       E +        GE    C 
Sbjct: 138 AVDAEIILLALDFLEELGLTGLTLKLNAVGC--PQCRPAYRERLQAYFKEYLGELCEDCR 195

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK------RVS 278
             +   P+   +   D      +     T    A    H + +   L             
Sbjct: 196 DRYTRSPLRILDCKADAAQPFMAGAPAITDCLCAECAAHFDAVQSYLTAAGVSYTLDTRL 255

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RG++      F   Y    + +     G+   +     G     V  A           
Sbjct: 256 VRGLDYYTRTAFEIAYPPLGAQSAVAGGGRYDGLVEELGGSPTPAVGFAAGIERVLLALT 315

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                      + + I A       A   +   L + G     D  G  + +Q   A+  
Sbjct: 316 QQHLLPEEPPAADVFIIALGAAAGAAAFPLLHDLRRGGVRALMDYAGRSMKAQMKQANKA 375

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G    VI+G   +      ++      +E + L +++        
Sbjct: 376 GAHYAVILGEDELRSGTAALRDMTESTQEMIPLADMVQRLISEVK 420


>gi|251781086|ref|ZP_04824006.1| histidine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085401|gb|EES51291.1| histidine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 417

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/402 (14%), Positives = 117/402 (29%), Gaps = 14/402 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+     G  E+  P  +  +L++       D   KEM    D+ ++++   
Sbjct: 22  WHYVENTFRDVVKAYGIREIRTPMFEHTELFLRGVGDTTDIVQKEMYTFNDKGNRSVTLK 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F  +       P   + I   FR E   +    R R+F       F    
Sbjct: 82  PEGTAPAVRAFIENRLFNEAQPTKLFYITPTFRYENVQKG---RLRQFHQCGIEIFGSKE 138

Query: 168 EGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                 +      +  ++  +     I       P      +E +        +  C   
Sbjct: 139 PTMDVEAIKVAMDTLSKLGLKSLSLHINNLGC--PTCRAKYNEALKKFLEENYEDLCDTC 196

Query: 227 ---FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARG 281
              F   P+   +        +     Q         + H  K+ + L   E   +  +G
Sbjct: 197 KSRFEKNPMRILDCKERKCHEITKNAPQILDYVCEECETHFNKVKEYLDILEIPYIVDQG 256

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           I  G  +Y  T + +          G+   +     G     V  A+ E           
Sbjct: 257 IVRGLDYYTKTIFEIINDDFTVCGGGRYDKLVEELGGPEMPAVGFAIGEERIIMTLENEG 316

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +    +  + I A     +    K+   L  +G     + MG  I ++   A+ +G  
Sbjct: 317 IEIPNENMVDLYIGARGDAEKKYAFKLAHDLRSLGVKCEINHMGRSIKAEMKYANKIGSK 376

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              I+G   + ++++ +K    G    +SL+  I        
Sbjct: 377 FTTILGEDELENNRINLKRMEDGEIFTLSLDN-IEEIQKLVK 417


>gi|212224873|ref|YP_002308109.1| histidyl-tRNA synthetase [Thermococcus onnurineus NA1]
 gi|212009830|gb|ACJ17212.1| histidyl-tRNA synthetase [Thermococcus onnurineus NA1]
          Length = 437

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 64/437 (14%), Positives = 120/437 (27%), Gaps = 41/437 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G    LP        V   IR+   R    E+  PT +   L+   SG  +   +++   
Sbjct: 10  GTRDLLPEEMAKRRWVFERIRDVFERYNFHEILTPTFEYTALFQLRSG--EEVVEQLYAF 67

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +  +F +  ++       +Y   +   +E +      R REF 
Sbjct: 68  EDKGGRNLSLRPDMTSSVARLFVNQFQNAPKPVKWYYIANMFRYEEPQSG----RYREFW 123

Query: 157 MKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLG----------LKSIPMRAESGPIGGD 205
                        +       +  SYL    +             +   M   S  IG  
Sbjct: 124 QAGVELIGSDKVEADAEVIALLVESYLATGLKEFTVNIGDRVLLDEFAKMLGVSDDIGLM 183

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-----EQWTAPYAATS 260
              +        +      +  +      +     +I      V     E +T+  A   
Sbjct: 184 RLIDKKDKMSREDFIGSLKEFGLSDEGIGKVLALIEIKGKPDDVLPKAEELFTSEKAREE 243

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----------DGKDH 310
                +L + L          I++G    F    S+   A                  + 
Sbjct: 244 IKRLYELVELLKAYGVYDFILIDLGIARGFDYYTSVVFEAIAPNDLGIGSIGGGGRYDNL 303

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
               G     A      +       +               +     +   R    +I  
Sbjct: 304 IEVFGGKPTPATGFAIGIERLIPILEWRGLIPEPKLRPDVYVIPIGKELELRAKAIEIAQ 363

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            L K G    +D     +G +   A      LG P  ++VG K +++ KV I+   +G +
Sbjct: 364 SLRKKGITADYDL----MGRKLKKALDYAGRLGVPYVILVGKKDLAEGKVTIRDMESGEQ 419

Query: 427 EDMSLEEVINYASHRFS 443
             + +E V    S    
Sbjct: 420 IAVKIERVSEELSRLLR 436


>gi|269123830|ref|YP_003306407.1| histidyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
 gi|268315156|gb|ACZ01530.1| histidyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
          Length = 414

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/406 (13%), Positives = 122/406 (30%), Gaps = 29/406 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            + +    ++  ++ G   +  P L+  +L+  +     D   KEM    D+ D+++   
Sbjct: 20  YNFIVNTAKKIFDKYGYTNIITPILEETELFKRAVGDETDVVSKEMYTFMDKGDRSITMR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   + +      N    +Y     +R E   +       +F ++         
Sbjct: 80  PEGTAGVVRAYLNAGFHKSNPNVKWYYYGPMYRYEAPQKGRYREFHQFGVESFGIRSAFL 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI------------VLAD 215
           +    +    F+  L I       +     ES         +++            + A+
Sbjct: 140 DAELITMACEFLDNLGITDIYVELNSLGSVESRITYIKELKKYLLNNIDKLSDDSKIRAE 199

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
               +VF SKD  D  +        D     S +      Y         ++  SL    
Sbjct: 200 KNPLRVFDSKDEGDQKVLENAPKLHDFFDEESKIFFEELKYNLDEFNIKYEINPSLVRGL 259

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATF--KGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
              +  +        G + ++     +           V    +  G  R     +    
Sbjct: 260 DYYSDTVFEIKSNKLGAQSTILGGGRYDKLTEILAGIKVPAVGFAAGIER-----LSMIM 314

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D   +   D                +  +     I   L K   +V ++   +   +Q  
Sbjct: 315 DESLLSKKDKKVFIIYF--------EETKKYLFDIIKILRKNDVNVEFEYSIKGFSAQMK 366

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            A+ +G    +I+G   ++  K+  K   TG +E++++ E+I    
Sbjct: 367 KANKVGANYVLILGENEINSGKITFKDFKTGNQEEITITEMIERIK 412


>gi|24113843|ref|NP_708353.1| histidyl-tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|30063906|ref|NP_838077.1| histidyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|39932171|sp|Q83K44|SYH_SHIFL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|24052934|gb|AAN44060.1| histidine tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|30042161|gb|AAP17887.1| histidine tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|281601916|gb|ADA74900.1| Histidyl-tRNA synthetase [Shigella flexneri 2002017]
 gi|313651000|gb|EFS15400.1| histidyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|332754201|gb|EGJ84569.1| histidyl-tRNA synthetase [Shigella flexneri 4343-70]
 gi|332755564|gb|EGJ85928.1| histidyl-tRNA synthetase [Shigella flexneri K-671]
 gi|332756364|gb|EGJ86715.1| histidyl-tRNA synthetase [Shigella flexneri 2747-71]
 gi|332766347|gb|EGJ96557.1| histidyl-tRNA synthetase [Shigella flexneri 2930-71]
 gi|333000702|gb|EGK20278.1| histidyl-tRNA synthetase [Shigella flexneri VA-6]
 gi|333001703|gb|EGK21269.1| histidyl-tRNA synthetase [Shigella flexneri K-218]
 gi|333002309|gb|EGK21873.1| histidyl-tRNA synthetase [Shigella flexneri K-272]
 gi|333016132|gb|EGK35464.1| histidyl-tRNA synthetase [Shigella flexneri K-227]
 gi|333016432|gb|EGK35763.1| histidyl-tRNA synthetase [Shigella flexneri K-304]
          Length = 424

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/421 (13%), Positives = 120/421 (28%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNK---MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +   +F       + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGIFEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK--VGCDVFW 381
               ++                   +  I + A     + A   +  RL    +G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELLGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|294792129|ref|ZP_06757277.1| histidine--tRNA ligase [Veillonella sp. 6_1_27]
 gi|294457359|gb|EFG25721.1| histidine--tRNA ligase [Veillonella sp. 6_1_27]
          Length = 452

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 66/421 (15%), Positives = 126/421 (29%), Gaps = 21/421 (4%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLA- 97
            +LP        +   +RE     G  E+  P  +   L++       D   KEM     
Sbjct: 11  DFLPEQMINWHYIEQRMREICKIYGFNEIRTPAFEETKLFLRGIGETTDVVQKEMYTFTT 70

Query: 98  -DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D    +    P +       +  +    +     +Y +   FR +        R R+F 
Sbjct: 71  GDDGGSSFTLRPENTASAVRAYLENKVYGKEGLTKWYYMGPMFRHDKPQAG---RYRQFH 127

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHE-FIVL 213
              A                M V  L      GLK + +   S   PI   +  E  I  
Sbjct: 128 QFGAEVLGSQSPVVDSEVICMVVQLL---KDFGLKDLNVEVNSVGCPICRPVYREKLIAF 184

Query: 214 ADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +  + Q+   C +     P+   +   +   SL+    +           H E+L   L
Sbjct: 185 FEPKKEQLCSDCQERLYKNPLRILDCKNETCKSLSIGAPEIHEHLCEECHDHFEELKTYL 244

Query: 272 PENKRVSA------RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                         RG++      F  +Y+   + +     G+   +     G     + 
Sbjct: 245 TAANVQYTLNPRLVRGLDYYTKTAFEVQYTPLGAQSAVAGGGRYDGLVEELDGPHTPAIG 304

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A+                 P       + A     +    KI  +L  +   V  D  G
Sbjct: 305 FAMGMERLLLALEKQNLLPEPTVEPSAFVVALGDAAKVEAFKICQKLRSLDIPVEMDGQG 364

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + + +Q   A+ +     +I+G   ++  +  I+   T  +E +SL  V      + ++ 
Sbjct: 365 KSMKAQLKYANKINAKYVIILGDDELARKEAIIRFMDTSEQETVSLNIVAEDIKAKINDE 424

Query: 446 R 446
           +
Sbjct: 425 K 425


>gi|74313040|ref|YP_311459.1| histidyl-tRNA synthetase [Shigella sonnei Ss046]
 gi|123745955|sp|Q3YZ38|SYH_SHISS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|73856517|gb|AAZ89224.1| histidine tRNA synthetase [Shigella sonnei Ss046]
 gi|323169042|gb|EFZ54719.1| histidyl-tRNA synthetase [Shigella sonnei 53G]
          Length = 424

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/421 (13%), Positives = 119/421 (28%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNK---MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +   +F       + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGIFEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|298709965|emb|CBJ31687.1| Proline--tRNA ligase, central part [Ectocarpus siliculosus]
          Length = 492

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/409 (15%), Positives = 121/409 (29%), Gaps = 65/409 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    D     + +            P L     L  E+   D + KE   +
Sbjct: 123 GCMVIRPWGMAIWDAFKDDMDKRIKTYDVDNAYFPLLIPQSFLTKEAEHVDGFAKECAVV 182

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                    +     +  T I     K    L                            
Sbjct: 183 TH-------HRLCKSDDGTLIPDPEAKLEEPLVVRPT----------------------- 212

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI----- 211
                    +       Y K   SY  +  +L   +  +R E        S EF+     
Sbjct: 213 ---------SETVIWTMYRKWIDSYRDLPLKLNQWANVVRWEMRTRPLLRSAEFLWQEGH 263

Query: 212 -VLADTGETQVFCSKDFMDFPI-PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
              A   E      +  +++     E      ++ + S  E++                 
Sbjct: 264 TAHATKEEALSCAQEMLVEYSTACRETLALPTVMGVKSPKERFAG-----------ADET 312

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E    +   ++ G   + G  ++      ++  D K   V   S+G+   R++ A++
Sbjct: 313 YTIEALMQNGWALQSGTSHFLGQNFARAFEVYYQTPDEKRELVWATSWGV-TTRLMGAMV 371

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKA----HDQVCRDACEKIYARLSKVGCDVFWDDM- 384
            +  D  G+  P +VAP ++ ++ I         +   A + +  +L   G  V  D+  
Sbjct: 372 MTHSDDFGLRLPPAVAPKQVVIVPITKGPGEDTDLVNKAVDGVVDQLKAAGVRVKVDERP 431

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLE 432
             + G+++   +  G PL V +G K       + +K +  G R+    +
Sbjct: 432 NMRPGAKYFQWEAKGVPLPVELGPKNPKAGVAIVLKKKGGGGRQSFHSD 480


>gi|297527300|ref|YP_003669324.1| glycyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
 gi|297256216|gb|ADI32425.1| glycyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
          Length = 588

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 69/552 (12%), Positives = 139/552 (25%), Gaps = 142/552 (25%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTG-AIEMSVPTLQSA----------------- 77
            G Y + P G     N+      +    TG  +E+  P +                    
Sbjct: 33  AGFYDFGPSGVLIKRNIINEWLNQLVYNTGLVLEIETPIITPRIVLKASGHEDHFTDPIT 92

Query: 78  -----------------------------DLWV----ESGRYDSYGKEMLRLAD------ 98
                                        +LW      + R    G E+ +         
Sbjct: 93  ECTRCGRVFRADHLIEEALGIRAEGLSMDELWKLIKEHNIRCPECGGELTKPKPALLLFK 152

Query: 99  ------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                 +   A +   T + +          +   LP    QI    R+E+ PR G++R 
Sbjct: 153 TEIGPYKGSPAYLRPETAQGMFASFKHVLNIARNKLPLGIAQIGRVGRNEISPRQGLLRL 212

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF------------HRLGLKSIPMRAESG 200
           REF + +   F    +  + +   M                         K   +     
Sbjct: 213 REFTIMELEFFFDPEKALEETMTYMTDEIRNENINIITAEDKLKGEEKTRKYTAIELIEN 272

Query: 201 PIGGDLSHEFIVLADTGETQVFCS---KDFMDFPIPSENTDFDDII-------SLNSIVE 250
            I  +    + +       +       K   D  +P E   + +              VE
Sbjct: 273 KIVKNPWMAYWMALGNIFLRKLGIPPEKIRFDEKLPEEKAHYSEQTFDQEVYTEKYGWVE 332

Query: 251 QWTAPYAATSD------------------------------VHNEKLFDSLPENKRVSAR 280
                Y  T D                               + +K+ + + E+  V  +
Sbjct: 333 VAGYSYRTTYDLSRHIEYSKADLTYFKKYSKPVKKKIIKVVPNPKKIREIVGEDIGVIMK 392

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGA----------------DGKDHYVQMGSYGIGAMRV 324
            +            +                           G+     +     G  R+
Sbjct: 393 KLSEIPAEKILENLNKNNYVEINNYKLGRECFIISEKEETIHGEKIIPHVVEPSFGLERI 452

Query: 325 VAAVIESSHDGK---------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
              V+E+S +                         +   K   +       +IY  L + 
Sbjct: 453 FYVVLENSINIARDGRIVLKLPPRIAPYKVAVFPLVTGNKPKHKKMVSIARQIYRALLEN 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
               ++D+ G  IG ++A AD +G P  + V  + + D  V ++ R +  +  + ++E+ 
Sbjct: 513 NILAYYDEEG-SIGRRYARADEIGIPYAITVDYQTLEDKTVTLRDRDSREQIRLHIQEIY 571

Query: 436 NYASHRFSNNRP 447
           +         + 
Sbjct: 572 DKLLSLLGEKKE 583


>gi|226328004|ref|ZP_03803522.1| hypothetical protein PROPEN_01895 [Proteus penneri ATCC 35198]
 gi|225203708|gb|EEG86062.1| hypothetical protein PROPEN_01895 [Proteus penneri ATCC 35198]
          Length = 427

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/427 (12%), Positives = 115/427 (26%), Gaps = 32/427 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP   +    +   +++     G  E+  P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTRVWQKIENTLKQILAGYGFSEIRTPIVEHTPLFQRAIGEVTDVVEKEMYT 69

Query: 96  LADRND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVM 150
             DR +  +++   P +          H   Y      +Y     + +   + R R    
Sbjct: 70  FTDRGEDAQSLTLRPENTAGCVRAGIEHGLLYNQEQRLWYLGPMFRYERPQKGRYRQFHQ 129

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              E         D         + K       +   L                    E 
Sbjct: 130 LGAEVFGLQGPDIDAELIMLTARWWKALGIAEHVTLELNSIGSLEARAKYREALVAFLEQ 189

Query: 211 IVLADTGETQVFCSKD---FMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEK 266
            V     + +     +    +D   P   T  +D   L   ++  + A +     + +  
Sbjct: 190 HVDKLDEDCKRRMYSNPLRVLDSKNPEIQTLLNDAPELFDYLDDESRAHFDGLCALLDAV 249

Query: 267 LFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                   + V         +F       G++ ++     + G           +  +G 
Sbjct: 250 GITYRVNQRLVRGLDYYNRTVFEWVTSALGSQGTVCAGGRYDGLV--KQLGGHPTPAVGF 307

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL------SKV 375
              +  +I            D+           +          E+I  +L      +  
Sbjct: 308 AMGMERMILLVQAVNPEFVADTNVADVYLASFGEKSQSAALMLAEEIRDQLPTLRLMTNH 367

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G              Q   AD  G  + +I+G   ++   V +K   +G +  ++  ++ 
Sbjct: 368 G--------NGNFKKQLGRADKQGAKIALILGEDEINAGTVAVKDLRSGEQTIVARNDLA 419

Query: 436 NYASHRF 442
              +   
Sbjct: 420 QQLTLLL 426


>gi|329768512|ref|ZP_08260000.1| histidyl-tRNA synthetase [Gemella haemolysans M341]
 gi|328836662|gb|EGF86319.1| histidyl-tRNA synthetase [Gemella haemolysans M341]
          Length = 426

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/407 (13%), Positives = 117/407 (28%), Gaps = 10/407 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   +RE        E+  P  +S +L+        D   KEM    D+ ++++   
Sbjct: 20  WQYIEGKLREISKNFCYEEIRTPMFESTELFSRGVGDTTDIVQKEMYTFMDKGNRSLTLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNL-PFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYS 162
           P         +  +    + + P   Y +   FR E +     R  V    E + +++  
Sbjct: 80  PEGTAGTVRSYIENKLFAKTIQPQKLYYVGPMFRYERKQKGRYRQFVQYGVEVIGEESPK 139

Query: 163 FDLTPEG--SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
            D                 +     + LG            +            D     
Sbjct: 140 IDAEVISLAYNIYRMFGIENIKVSINSLGNPEERQAYNEALVKHFEPRINEFCEDCNNRL 199

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSA 279
                  +D  + +E+        L   + + +  Y A    H + L      ++  V  
Sbjct: 200 YKNPMRILDCKVDAEHELIKSAPRLLEYLGEESKQYFAEVLKHLDALGVKYEIDHNLVRG 259

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
                   F            T  G    +  +++         +  A+           
Sbjct: 260 LDYYTHTAFEIMIDNPEVELKTLCGGGRYNGLIKLLDGPEDKKGIGFALSIERLLLALES 319

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
               +       + + A  +   +A  K+   L   G  V  D   +++ +Q  +AD   
Sbjct: 320 ENIELPIDDTIDVFVVAMGEEASNAGVKLTNDLRLAGYSVQNDYFDKKMKAQMKIADRYN 379

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
               +I+G   +    + +K   +  +E + LE +++Y   +    +
Sbjct: 380 AKYSIIIGQSELESGTLVVKDMKSFEQETIKLENIVDYLQEKLRGEK 426


>gi|227827123|ref|YP_002828902.1| glycyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|227458918|gb|ACP37604.1| glycyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
          Length = 484

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/446 (11%), Positives = 115/446 (25%), Gaps = 53/446 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            G   WLP G      +         +       M   T+    ++  SG   ++   ++
Sbjct: 41  SGFIDWLPPGAMLRQKIIDSWINFFIKKIPNIFLMDGSTILPLSVFEASGHLANFTDPVI 100

Query: 95  RL--------------------------ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +                            D  D+ +         +T      I +    
Sbjct: 101 KCPKCSNTYRVDHLLKETNGKLICPRDLTDLKDQEIKQKSLM-LELTVGLADEINAALRP 159

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV-SYLRIFHR 187
                        +           +                +           L     
Sbjct: 160 ETAQNIYINFMNFKAIGLKLPFAIAQIGRSYRNEISPRGSRLREFVQMEIEEFVLPFHLN 219

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTG------ETQVFCSKDFMDFPIPSENTDFDD 241
                  ++    PI  +     + L +          ++          + +E     +
Sbjct: 220 SHPLYDNVKGIRLPIFYEEQTIEMELNEAVKKGLVPNIRLAFWIGREWQWLTNELGLPGN 279

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            I    +  +  A Y+  +      + D   E    + R      +       S    A 
Sbjct: 280 KIRFRIVPSEERAFYSKGTVDVEVNMEDDWVEIIGNAYRTDYDLTVH------SKHSGA- 332

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------ 355
                       +     G  R+  AV+  ++D         +      +  ++      
Sbjct: 333 --NLSENGTIPHVIEPSFGLDRIAIAVLLLNYDPNPSDRNWPLFRIPYKIAPLEIGIASI 390

Query: 356 AHDQVCRDACEKIYARLSKVGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            H     +  EK+   L  +        + G +I +Q+A AD LG PL + + SK + ++
Sbjct: 391 HHSDEYINIAEKVDLILRSLDYVTFKLFERG-KIDAQYAKADTLGIPLVITIDSKTLEEN 449

Query: 415 KVEIKHRLTGIREDMSLEEVINYASH 440
            V I++R T  +  +++ E+     +
Sbjct: 450 TVTIRNRDTKAQIRVNIGEIAQAVKN 475


>gi|320200078|gb|EFW74667.1| Histidyl-tRNA synthetase [Escherichia coli EC4100B]
          Length = 424

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 117/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVTFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQVLLNDAPALGDYLDKESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK--VGCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELQGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|312173201|emb|CBX81456.1| Histidyl-tRNA synthetase [Erwinia amylovora ATCC BAA-2158]
          Length = 450

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/422 (13%), Positives = 123/422 (29%), Gaps = 23/422 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        V  ++++  +  G  E+ VP ++   L++ + G   D   KEM  
Sbjct: 35  GMNDYLPAETAVWQRVEQVLKQVLSSYGFSEIRVPIVEQTPLFLRAIGEVTDVVEKEMYT 94

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF---RDELRPRFGVMRS 152
             DRN +++   P            H   Y      +Y   +       + R R      
Sbjct: 95  FDDRNGESLSLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRYERPQKGRSRQFHQIG 154

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            E         D         + K       +   L          +         E  V
Sbjct: 155 AEVFGLQGPDIDAELIMMTARWWKALGIADHVVLELNSIGSLQARANYRDALVAFLEQHV 214

Query: 213 LADTGETQVFCSKD---FMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEK-- 266
                + +     +    +D   P      +D  +L   ++  +   +A      +    
Sbjct: 215 EMLDEDCKRRMYSNPLRVLDSKNPDVQALLNDAPTLGDYLDDESREHFAGLCRHLDAAGI 274

Query: 267 ---LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L        R +        G + ++     + G   +       + G     
Sbjct: 275 AYRVNQRLVRGLDYYNRTVFEWVTDKLGAQGTVCAGGRYDGLVEQLGGHATPAVGFAMGL 334

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                P ++  + + A  Q  + A   +  +L        +  
Sbjct: 335 ERLVLLV-------QAVNPEFEPTRVVDVYVIAAGQGVQSAALLLAEQLRDALPELKLMS 387

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + +++G   V++ ++ IK   TG ++ ++  +     +  
Sbjct: 388 NLGGGSFKKQFARADKWGARIALVIGEDEVANGQLVIKDLRTGEQQTLAQGDAATVLAAL 447

Query: 442 FS 443
             
Sbjct: 448 LQ 449


>gi|113969573|ref|YP_733366.1| histidyl-tRNA synthetase [Shewanella sp. MR-4]
 gi|123130603|sp|Q0HKV8|SYH_SHESM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|113884257|gb|ABI38309.1| histidyl-tRNA synthetase [Shewanella sp. MR-4]
          Length = 425

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/417 (14%), Positives = 121/417 (29%), Gaps = 16/417 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        V A++R      G  E+  P +++ DL+  S G   D   KEM  
Sbjct: 10  GMNDILPTQSPLWQKVEAVLRASVAAYGYSEIRTPIVENTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y +   FR E   +    +  +F
Sbjct: 70  FEDRNGDSLTLRPEGTASTVRAGNEHGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQF 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            ++         +      +                 + LG  +         I     H
Sbjct: 129 GVEVYGIGSADIDAEVLMLSARLWEKLGISEHVTLELNTLGDPAERAAYREALIAFLEQH 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKL 267
           +  +  D+           +D   P   +   D  +L   + E+ +  +A   ++ +   
Sbjct: 189 KDKLDEDSQRRMYSNPLRVLDSKDPQVQSILGDAPALMDYLGEESSQHFAQLRELLDAVG 248

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                  + V         +F      SL    T       D  V             A 
Sbjct: 249 IQYRVNPRLVRGLDYYNRTVFE-WVTNSLGSQGTVLAGGRYDGLVAQLGGKDTPAVGFAM 307

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMG 385
            +E        +      P  + +      D    +   K+   L        V     G
Sbjct: 308 GLERIVLLLETLELTQDIPAAVDVYVAAMGDSCLVE-AIKVAQELRSTLPTLRVMSHCGG 366

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHR 441
                Q   AD  G  + +++G + +++  V +K+ R    ++ ++   +  + +  
Sbjct: 367 GNFKKQIKRADKSGAQVALLIGEEELAEGVVTVKYLRNDNEQQRVARNALSAFLAEL 423


>gi|90077472|dbj|BAE88416.1| unnamed protein product [Macaca fascicularis]
          Length = 673

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 67/509 (13%), Positives = 133/509 (26%), Gaps = 106/509 (20%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 144 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 203

Query: 96  LADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ--------------- 136
                +      ++     + +         KS                           
Sbjct: 204 DVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELTDLFVNYNVK 263

Query: 137 -----LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK----MFVSYLRIFHR 187
                  FR+E+ PR G++R REF M +   F    E     +          Y      
Sbjct: 264 SPIIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQV 323

Query: 188 LGLKSIPMRAESGPIGG---------------------------------DLSHEFIVLA 214
            G  +  MR       G                                   +       
Sbjct: 324 SGQSARKMRLGDAVEQGVINNTVLGYFIGSIYLYLTKVGISPDKLRFRQHMENEMAHYAC 383

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFD---------------------------------- 240
           D  + +   S  +++    ++ + +D                                  
Sbjct: 384 DCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVSVVQFEPNKG 443

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            I        +    Y A  D       + L   K       E G  F   TK  + +  
Sbjct: 444 AIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEFTIETE-GKTFQL-TKGMVNVKR 501

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK----- 355
             K    ++    +     G  R++  V E +   +      +   F   +   K     
Sbjct: 502 FQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLP 561

Query: 356 -AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD- 413
            + +Q      +++   L++ G     DD    IG ++A  D +G    V +    V+  
Sbjct: 562 LSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKT 621

Query: 414 -SKVEIKHRLTGIREDMSLEEVINYASHR 441
                ++ R +  +    + E+ +     
Sbjct: 622 PHTATLRDRDSMRQIRAEVSELPSIVRDL 650


>gi|294101290|ref|YP_003553148.1| prolyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
 gi|293616270|gb|ADE56424.1| prolyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
          Length = 479

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 68/416 (16%), Positives = 132/416 (31%), Gaps = 67/416 (16%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    +++     +    TG +    P L     L  E+   + +  E   +
Sbjct: 33  GCMVIRPTGYSLWESIQKHFDDAFKETGHVNAYFPVLIPNSFLEKEAEHVEGFSPECAVV 92

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                                                                    E L
Sbjct: 93  T----------------------------------------------------HAGGELL 100

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF-IVLAD 215
            +       +     H Y+K   S+  +   +   +  MR E  P     + EF      
Sbjct: 101 EEPLVVRPTSETVIGHMYSKWIQSWRDLPILINQWANVMRWEKRPRLFLRTSEFLWQEGH 160

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           T       + +     +        +I+++  IV + TA      +     +     E  
Sbjct: 161 TAHATEEEAMEETLKMLEVYRRIMTEILAIPVIVGEKTAG-----ERFPGAVNTYTCEAM 215

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               + ++ G   + G  +S      F+   G+  Y    S+G+ + R++ A+I +  D 
Sbjct: 216 MSDKKALQAGTSHFLGQNFSRAFDIQFQNQKGEQEYAWTTSWGV-STRLIGALIMTHSDN 274

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDA----CEKIYARLSKV-GCDVFWDDMG--EQI 388
            G+I P  VAP +++++ I  +D V  +       +   +L ++ G    + D     + 
Sbjct: 275 DGLILPPRVAPVQVAILPISTNDSVMEEQLLPRALEFSDKLDQMLGGRFTFVDKQFHMRP 334

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G +F      G PL++ +G K ++   V    R TG +ED+  E V         +
Sbjct: 335 GDRFFYHLQKGVPLRLELGEKDLAAGTVRAVRRDTGSKEDIPFENVPLRVKALLED 390


>gi|169831068|ref|YP_001717050.1| histidyl-tRNA synthetase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|229558654|sp|B1I363|SYH_DESAP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|169637912|gb|ACA59418.1| histidyl-tRNA synthetase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 420

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 64/420 (15%), Positives = 112/420 (26%), Gaps = 30/420 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G    LP        V A+IR+     G  E+  P  ++ +L+        D   KEM  
Sbjct: 8   GTSDLLPGDTARWQRVEAVIRDLCRVYGYGEIRTPLFEATELFQRGVGDITDIVEKEMYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+  +++   P     +T  +  +       P   + +   FR +        R R+F
Sbjct: 68  FTDKGGRSLTLRPEGTAPVTRAYLENGLHAVPQPVKLFYVGPMFRYDRPQAG---RYRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                  F      +           +  F RLGL  + +   S    G  +     LAD
Sbjct: 125 HQFGVEIFGAADPAADAEV---IALAMHFFDRLGLAGLELHLNSVGCPGCRAVLRRKLAD 181

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             E +           +        D            AP           L      + 
Sbjct: 182 YFEPRADELCANCRGRLRKNPLRLLDCKEERCREAGRGAPVPVDY------LCPECGGHF 235

Query: 276 RVSARGIE-VGHIFYF------GTKYSLPMSATFKGADGKDHYVQMGSYGI--------G 320
               R ++ +G  F        G  Y    +       G       G            G
Sbjct: 236 GRVQRYLDLLGISFKLNPCLVRGLDYYTRTAFEILVPGGGAQDAVGGGGRYDGLVSAIGG 295

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDV 379
                            +    +          +         +    + + L   G   
Sbjct: 296 PAVPGVGFALGLERTLLLWSRQAGEEVLPQGPVVFIATAGETEETATVLLSGLRAAGVPA 355

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             +  G  + +Q   A  LG    +IVG   +   +V ++    G++  +SL EV+    
Sbjct: 356 DREYTGRSLKAQMKFAAKLGARWVIIVGKDELEAGEVILRDMGAGLQTRVSLGEVVERLR 415


>gi|168238259|ref|ZP_02663317.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194736154|ref|YP_002115584.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197251796|ref|YP_002147475.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|204929541|ref|ZP_03220615.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|238912642|ref|ZP_04656479.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|229558725|sp|B5F197|SYH_SALA4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558732|sp|B4TR94|SYH_SALSV RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|194711656|gb|ACF90877.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197215499|gb|ACH52896.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197288861|gb|EDY28234.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204321260|gb|EDZ06460.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 424

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/432 (12%), Positives = 116/432 (26%), Gaps = 45/432 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 AEVFGLQGPDIDAELIMLTARWWRALGIADHVSLELNSIGSLEARANYRDALVAFLEQHQ 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   ++  +   +A    + +    
Sbjct: 190 ETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHFAGLCKLLDAAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++                   +  I + A     + A   +  RL           
Sbjct: 310 ERLVLLV-------QAVNPEFIASPVVDIYLVAAGAQTQSAAMTLAERL----------- 351

Query: 384 MGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             E  G +             FA AD  G  + +++G   V+D  V +K   +G +  ++
Sbjct: 352 RDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVA 411

Query: 431 LEEVINYASHRF 442
            + V  +     
Sbjct: 412 QDSVAAHLRTLL 423


>gi|161350040|ref|NP_895731.2| histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313]
 gi|46397792|sp|Q7V4P3|SYH_PROMM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
          Length = 436

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/397 (15%), Positives = 107/397 (26%), Gaps = 24/397 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G+   LP   +    V ++ R+   R G  E+  P L+  +L+        D  GKEM  
Sbjct: 9   GMVDLLPEQTRCWQAVESVARDHFRRAGLQEIRTPLLEVTELFARGIGEATDVVGKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR D++    P     +      H       P  F+     FR E        R R+F
Sbjct: 69  FVDRGDRSCTLRPEGTASVVRAALQHGL-LSQGPQRFWYGGPMFRYERPQAG---RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL-- 213
                    +    S      +  + L      GL        +         E +    
Sbjct: 125 YQIGVEYLGVGSPRSDAEVIALAWALLVDLGVQGLVLEINSLGTLQDRQKYREELVAWLE 184

Query: 214 -------ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                   D+ +         +D   P+      D  +L   +   +        V  E 
Sbjct: 185 ARSEELDDDSRKRLYTNPLRILDSKHPAIKELLQDAPTLFEALSVESKARFEEVQVDLEA 244

Query: 267 LFDSLPENKRVSARGIEVGHIF------YFGTKYSLPMSATFKG--ADGKDHYVQMGSYG 318
           L      N R+       GH          G + ++     + G              + 
Sbjct: 245 LQIPFQLNPRLVRGLDYYGHTAFEITSDQLGAQATVCGGGRYDGLVEQLGGAPTPAFGWA 304

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G  R++  +  ++            A  +  L  +    +        I  +L   G  
Sbjct: 305 FGMERLMLLLEAAASINPSGSAARLRASTRPDLYVVNRG-EQAERVALVIAHQLRAAGLV 363

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           V  D  G     QF  A        +++G       +
Sbjct: 364 VELDSSGAAFNKQFKRAGRSRATWALVIGDDEAERGE 400


>gi|150403134|ref|YP_001330428.1| glycyl-tRNA synthetase [Methanococcus maripaludis C7]
 gi|166227936|sp|A6VIK1|SYG_METM7 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|150034164|gb|ABR66277.1| glycyl-tRNA synthetase [Methanococcus maripaludis C7]
          Length = 574

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 77/550 (14%), Positives = 163/550 (29%), Gaps = 147/550 (26%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ--------------------NRTGAIEMSV-PTLQ 75
            G + + PLG    +NV    R+                        +G +E    P ++
Sbjct: 28  AGFFDYGPLGAILKNNVINTWRKHYIVNEGFYEIDSPTVTPYEVLKASGHVENFTDPLVE 87

Query: 76  SADLWVESGRYDSYG-------------KEMLRLADRNDK-------------------- 102
             +   ES R D                +E+  + ++N+                     
Sbjct: 88  CKECL-ESFRADHIIEENVDVDTEGKTLQELQEMIEKNNIKCPKCGGEFKEVSTFNLMFA 146

Query: 103 ----------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                     A +   T + +     R        LPF   QI   +R+E+ PR GV+R 
Sbjct: 147 TSIGPGGKRAAFMRPETAQGIFIQFKRISQFFRNKLPFGAVQIGKAYRNEISPRQGVIRL 206

Query: 153 REFLM-KDAYSFDLTPEGSKHSYNKMFVSYLRIFH------------------------R 187
           REF   +  +  D   + +   +  +    L +                          +
Sbjct: 207 REFTQAEGEFFIDSRKKENFEKFESVKDMVLPLLPGKNQENESLSAEEKIVRMSLSDAVK 266

Query: 188 LGLKSIPMRAESGPIGGDLSHEF------------------IVLADTGETQVFCSKDFM- 228
            G+ +    A    +      E                      AD  + +++  +    
Sbjct: 267 NGVIAHEAIAYYVAVTKKFLMEIGIDESKLRFRQHLPNEMAHYAADCWDAELYTDRYGWI 326

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSD----VHNEKLFDSLPENKRVSARGIEV 284
           +    ++ T++D +  + +  E  +       D    V+  +L   L          I  
Sbjct: 327 ECVGIADRTNYDLLAHMKNSSEDLSVFVELDEDKEVEVYEIELNYKLVGRTFKGDAKILE 386

Query: 285 GHIFYFGTKYSLPMSATFKGA----------------------------DGKDHYVQMGS 316
             +     K    +    +                               G+     +  
Sbjct: 387 ESLKELNDKKMEELVEALETEGKYVLKTCKRDFEILKEYLTAKKVKKIVKGEKIIPHVIE 446

Query: 317 YGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
              G  R+   V+E +     D   + + ++V+P K+ +  +    +   +    +  +L
Sbjct: 447 PSYGIDRITYCVMEHAFKEEEDRTVMGFSNAVSPIKVGVFPLVNK-EGMPEIAMDLKNKL 505

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            + G    +DD G  IG ++   D +G P  V +  + ++D  V I+ R +  +  + + 
Sbjct: 506 RENGLIAEYDDSGA-IGRRYMRMDEVGTPFCVTIDGETLTDRSVTIRERDSREQFRIPIN 564

Query: 433 EVINYASHRF 442
           EV++Y   + 
Sbjct: 565 EVVSYIKDKL 574


>gi|262382896|ref|ZP_06076033.1| glycyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|262295774|gb|EEY83705.1| glycyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
          Length = 514

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/479 (11%), Positives = 130/479 (27%), Gaps = 81/479 (16%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYD--------- 87
           +Y +   G +  +N+     +         + +         +W  SG  D         
Sbjct: 33  VYDYGQYGVELKNNIKKYWWDSMTLLHENVVGIDSAIFMHPTIWKASGHVDAFNDPLIDN 92

Query: 88  ----------------------SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
                                    KE+ + A +  ++       E     +      + 
Sbjct: 93  KDSKKRYRADVLIEDHLGKIEEKMNKEVAKAAKKFGESFDEAKFRETNPRVLEHQAKWNE 152

Query: 126 RNLPFTFYQIQLKFR--------DELRPRFGVMRSREFLMKDAYSFDLTPEGSKH----- 172
            +  ++    +  F          E+       R+   + +    F      +       
Sbjct: 153 IHERYSKAMNESNFEDLRQLILDCEIVCPISGTRNWTEVRQFNLMFSTDMGSTADGATKI 212

Query: 173 ----------------SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA-- 214
                                 +       ++G            I      E + +   
Sbjct: 213 YLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFF 272

Query: 215 -DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
              GE   +  K         +     D        E+  A YA  +     ++     E
Sbjct: 273 VRPGEEIEWFKKWKSTRLKWHQALGLGDEKYRYHDHEKL-AHYANAATDIEFEMPFGFKE 331

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR---------V 324
            + + +R            K+S      F     + +   +    IG  R          
Sbjct: 332 VEGIHSRTNFDLSQHE---KFSGKKIQYFDPELNQSYTPYVIETSIGVDRVFLSIMAGSY 388

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
               + +      +  P ++AP K++++ +   D    +  E+I   L        +D+ 
Sbjct: 389 CEETLANGESRVVLKLPAALAPIKLAVLPLVKKD-GLPEKAEEIINMLR-FDFRCQYDEK 446

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              IG ++   D +G P  + V    + D+ V I+ R T  +E +S++++ +  + + S
Sbjct: 447 D-SIGKRYRRQDAIGTPYCITVDHDTLKDNCVTIRFRDTMEQERISIDKLHDIITEKVS 504


>gi|56751844|ref|YP_172545.1| histidyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|81676835|sp|Q5N0Z5|SYH_SYNP6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|56686803|dbj|BAD80025.1| histidyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
          Length = 435

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/408 (13%), Positives = 111/408 (27%), Gaps = 23/408 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    RE   R    E+  P  +   L+        D  GKEM    DR 
Sbjct: 14  LPPETQVWQWIEQTAREILGRAAVQEVRTPIFEQTALFERGIGEATDVVGKEMYSFRDRG 73

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+++   P         +  H  + +            FR E        +  +  ++  
Sbjct: 74  DRSLTLRPEGTAGTVRAYIEHGLASQGGVQRLRYTGPMFRYERPQAGRQRQFHQLGLELL 133

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------ 214
            + D   +    +     +  L + +     +    A           +++         
Sbjct: 134 GTADARADAEAIALATQILQALGLKNLRLDLNSVGDACDRAAYRQALVDYLTPYAADLDP 193

Query: 215 ------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                 +    ++  SKD     I +E     D +S  S           T    + +L 
Sbjct: 194 DSRDRLERNPLRILDSKDERTQAIVAEAPSLHDYLSERSRQLFEQVQQLLTHLGIDYRLE 253

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             L                   G + ++     + G   +    +  + G         +
Sbjct: 254 PKLVRGLDYYTHTAFEIISSDLGAQATVCGGGRYDGLVSQLGGPETPAVGWAMGLERLVL 313

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +                        + +   +       +  +L   G  V  D  G   
Sbjct: 314 LLQQGQAVPP---------ATLDFYLVSRGAIAEGQALILAQKLRSAGFGVELDLSGSAF 364

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           G QF  AD  G    +++G       +V +K   +G ++ +   E++ 
Sbjct: 365 GKQFKRADRSGAIACLVLGDAEAEQGQVNLKWLQSGEQQTLDQSELLQ 412


>gi|110639855|ref|YP_680065.1| glycyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282536|gb|ABG60722.1| glycyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
          Length = 504

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/458 (13%), Positives = 131/458 (28%), Gaps = 58/458 (12%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTG--AIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +Y +  +G +  +N+  +  +   +     + +          W  SG  D +   M+  
Sbjct: 40  VYDYGQMGVELKNNIKIVWYKAMTQLNDNIVGIDASIFMHPLTWKASGHIDGFSDPMIDN 99

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---------QIQLKFRDEL--RP 145
            D   +        E                L               +Q    +E    P
Sbjct: 100 KDSKKRYRADVLVEERAAQMEAAGKKDEADALVKKLARLLEADDLKGVQDLITNEKITCP 159

Query: 146 RFGVMRSREFLMKD--------------AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
             G     E    +              +  +           N + V            
Sbjct: 160 VSGTSNWTEVRQFNLMFSTQVGSVAEDSSTIYLRPETAQGIFVNFLNVQKSGRMKIPFGI 219

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVF---CSKDFMDFPIPSENTDFDDIISLNSI 248
           +   +A    I        +   +  E Q F    ++            ++   I L + 
Sbjct: 220 AQIGKAFRNEIVARQFTFRMREFEQMEMQFFIRPGTEMEWYNKWKESRLNWHKAIGLPAE 279

Query: 249 VEQW-----TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT-- 301
             ++      A YA  +     +      E + + +R           +K          
Sbjct: 280 KLKFHDHEKLAHYANAAVDIEFEFPFGFKEMEGIHSRTDFDLANHQELSKKKQQYFDNDI 339

Query: 302 --FKGADGKDHYVQMGSYGIGAMRVVAAVIESSH----------------DGKGIIWPDS 343
               G    ++   +    +GA R   AV+ +++                +   +    +
Sbjct: 340 DPVTGKAFGNYVPFVVETSVGADRCFLAVLCNAYTEETTVEQTEEGEKVKERVYLKLHPT 399

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP K +++ I   D    +   +IY  L      V ++D    IG ++   DL+G P  
Sbjct: 400 LAPIKAAILPITKKD-GLPEKAMEIYNELK-YDIKVTYEDKD-SIGKRYTRNDLIGTPFC 456

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           + V  + + D+ V I+HR T ++E + + E+       
Sbjct: 457 IAVDHQTLEDNTVTIRHRDTTLQERVPISELRLKIRKE 494


>gi|301648269|ref|ZP_07248012.1| histidyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|307139149|ref|ZP_07498505.1| histidyl-tRNA synthetase [Escherichia coli H736]
 gi|331643134|ref|ZP_08344269.1| histidine--tRNA ligase [Escherichia coli H736]
 gi|301073656|gb|EFK88462.1| histidyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|331039932|gb|EGI12152.1| histidine--tRNA ligase [Escherichia coli H736]
          Length = 424

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 118/421 (28%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
               + + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVKQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|32140555|dbj|BAC78194.1| prolyl-tRNA synthetase [Raphanus sativus]
          Length = 220

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD---QVCRDACEKIYARLSKVGC 377
           + R +  +I +  D KG+I P  VA  ++ +I +   D   Q   DAC    + LS+ G 
Sbjct: 8   STRTIGVMIMTHGDDKGLILPPKVASVQVVVIPVPYKDANTQGIFDACTATVSALSEAGI 67

Query: 378 DVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               D       G +++  ++ G PL++ +G + + + +V    R  G +ED+    ++ 
Sbjct: 68  RAEEDLRDNYSPGWKYSNWEMKGVPLRIEIGPRDLENDQVRTVRRDNGAKEDIPRGSLVE 127

Query: 437 YASHRFSNNRP 447
           +        + 
Sbjct: 128 HVKELLEKIQE 138


>gi|205360461|ref|ZP_02683413.2| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205349561|gb|EDZ36192.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 445

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/436 (13%), Positives = 115/436 (26%), Gaps = 53/436 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 31  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 90

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 91  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 150

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            E         D         + +       +   L         E+     D    F+ 
Sbjct: 151 AEVFGLQGPDIDAELIMLTARWWRALGIAEHVSLELNS---IGSLEARANYRDALVAFLE 207

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD--- 269
                  +  C +     P+   ++   D+ +L +            S  H   L     
Sbjct: 208 QHQETLDED-CKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHFAGLCKLLD 266

Query: 270 ----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                      L        R +        G++ ++     + G   +       + G 
Sbjct: 267 AAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGF 326

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                   ++                   +  I + A     + A   +  RL       
Sbjct: 327 AMGLERLVLLV-------QAVNPEFIASPVVDIYLVAAGAQTQSAAMTLAERL------- 372

Query: 380 FWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
                 E  G +             FA AD  G  + +++G   V+D  V +K   +G +
Sbjct: 373 ----RDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQ 428

Query: 427 EDMSLEEVINYASHRF 442
             ++ + V  +     
Sbjct: 429 TAVAQDSVAAHLRTLL 444


>gi|16765842|ref|NP_461457.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161612720|ref|YP_001586685.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167549458|ref|ZP_02343217.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167991830|ref|ZP_02572929.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168232089|ref|ZP_02657147.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168466728|ref|ZP_02700582.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194470025|ref|ZP_03076009.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197263278|ref|ZP_03163352.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|200387284|ref|ZP_03213896.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|224582941|ref|YP_002636739.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|20141626|sp|O52765|SYH_SALTY RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189082308|sp|A9N202|SYH_SALPB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|254782343|sp|C0PYN1|SYH_SALPC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|16421066|gb|AAL21416.1| histidine tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161362084|gb|ABX65852.1| hypothetical protein SPAB_00419 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194456389|gb|EDX45228.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|195630851|gb|EDX49443.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197241533|gb|EDY24153.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|199604382|gb|EDZ02927.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205325473|gb|EDZ13312.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205329927|gb|EDZ16691.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333643|gb|EDZ20407.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|224467468|gb|ACN45298.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261247718|emb|CBG25546.1| HisRS [Salmonella enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994639|gb|ACY89524.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159071|emb|CBW18585.1| Histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913509|dbj|BAJ37483.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321222777|gb|EFX47848.1| Histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613733|gb|EFY10672.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619524|gb|EFY16400.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625029|gb|EFY21858.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629528|gb|EFY26304.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634041|gb|EFY30778.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635521|gb|EFY32232.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639803|gb|EFY36482.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644425|gb|EFY40966.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648570|gb|EFY45019.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655210|gb|EFY51519.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658257|gb|EFY54523.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664258|gb|EFY60455.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669425|gb|EFY65574.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673152|gb|EFY69258.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676544|gb|EFY72612.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683294|gb|EFY79308.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685820|gb|EFY81813.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323130850|gb|ADX18280.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323194763|gb|EFZ79951.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199549|gb|EFZ84640.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204676|gb|EFZ89674.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208124|gb|EFZ93069.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210152|gb|EFZ95053.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217020|gb|EGA01742.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221818|gb|EGA06222.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225003|gb|EGA09258.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229292|gb|EGA13416.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235393|gb|EGA19477.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237421|gb|EGA21484.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245175|gb|EGA29176.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248878|gb|EGA32804.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253165|gb|EGA36997.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255399|gb|EGA39167.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263532|gb|EGA47059.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266353|gb|EGA49841.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269816|gb|EGA53266.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|332989449|gb|AEF08432.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 424

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/436 (13%), Positives = 115/436 (26%), Gaps = 53/436 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            E         D         + +       +   L         E+     D    F+ 
Sbjct: 130 AEVFGLQGPDIDAELIMLTARWWRALGIAEHVSLELNS---IGSLEARANYRDALVAFLE 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD--- 269
                  +  C +     P+   ++   D+ +L +            S  H   L     
Sbjct: 187 QHQETLDED-CKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHFAGLCKLLD 245

Query: 270 ----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                      L        R +        G++ ++     + G   +       + G 
Sbjct: 246 AAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGF 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                   ++                   +  I + A     + A   +  RL       
Sbjct: 306 AMGLERLVLLV-------QAVNPEFIASPVVDIYLVAAGAQTQSAAMTLAERL------- 351

Query: 380 FWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
                 E  G +             FA AD  G  + +++G   V+D  V +K   +G +
Sbjct: 352 ----RDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQ 407

Query: 427 EDMSLEEVINYASHRF 442
             ++ + V  +     
Sbjct: 408 TAVAQDSVAAHLRTLL 423


>gi|115906275|ref|XP_001189525.1| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative), partial [Strongylocentrotus
           purpuratus]
          Length = 149

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/140 (42%), Positives = 88/140 (62%), Gaps = 1/140 (0%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
            +AL+ +  +I  E  + G  ++++P +  + LW  SGRY  YG E++ L DR++     
Sbjct: 1   MRALEKLIKVIDTEMQKVGGQKIAMPGMTPSSLWKTSGRYSDYGPELITLQDRHNVDYCL 60

Query: 107 GPTHEEVMTDIFRSHI-KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           GPTHEE +TDI       S++ LP   YQI  KFRDE+RPR+G++R REFLMKD Y+FD 
Sbjct: 61  GPTHEEAVTDIVAGEKTLSHKRLPIKLYQITNKFRDEMRPRYGLLRGREFLMKDLYTFDS 120

Query: 166 TPEGSKHSYNKMFVSYLRIF 185
             EG++ +Y  +  +Y RIF
Sbjct: 121 NLEGAEETYRSVCEAYQRIF 140


>gi|67924802|ref|ZP_00518201.1| Histidyl-tRNA synthetase, class IIa [Crocosphaera watsonii WH 8501]
 gi|67853344|gb|EAM48704.1| Histidyl-tRNA synthetase, class IIa [Crocosphaera watsonii WH 8501]
          Length = 426

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/427 (14%), Positives = 113/427 (26%), Gaps = 26/427 (6%)

Query: 34  QHSKGIYSWLP--LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSY 89
           Q   G    LP  +G      V  +  +  +R    E+  P  +   L+        D  
Sbjct: 5   QTPPGTKDILPEEIGY--WQYVETVATQILSRAMYYEIRPPIFEQTSLFERGIGEATDVV 62

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GKEM    DR D+++   P     +   +  +           +     FR E       
Sbjct: 63  GKEMYTFRDRGDRSLTLRPEGTAGVVRAYLQNNLYAAGGVKRLWYFGPMFRYERPQAG-- 120

Query: 150 MRSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            R R+F            P                +  +     I    +          
Sbjct: 121 -RQRQFHQIGLELIGTGDPRADVEVIALATDILKTLGLQSLKLDINSVGDRND--RQNYR 177

Query: 209 EFIVLA---DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           E +V        E            P+   ++       +N             S  H +
Sbjct: 178 EALVNYFLPYKEELDPDSQDRLEKNPLRILDSKAKRTKEINENAPSILEYLGDASKKHFD 237

Query: 266 KLFDSLPENKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           ++   L +            RG++      F    S  + A      G  +   +   G 
Sbjct: 238 QVQQLLTDLGIEYNINPCLVRGLDYYTHTAF-EIISDDLGAQATVCGGGRYDGLVEELGG 296

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                V   I        +            +  +    +        +  +L   G  V
Sbjct: 297 NPTPAVGWAIGMERLIILLKKLQPSPQTSPDIYVVSRG-EAAEAQGLLLAQKLRAEGLTV 355

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN--- 436
             D  G   G QF  AD  G    +++G +   +  V++K   +  ++ M+  E+ N   
Sbjct: 356 ELDMSGSAFGKQFKRADRSGAIACLVLGEEEAVNQTVQLKWLQSKEQQTMTQSELFNQVG 415

Query: 437 YASHRFS 443
               + +
Sbjct: 416 ELKEQLN 422


>gi|194443808|ref|YP_002041780.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|198241839|ref|YP_002216585.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|207857930|ref|YP_002244581.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|229558726|sp|B5FR62|SYH_SALDC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558727|sp|B5R581|SYH_SALEP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558730|sp|B4T0P8|SYH_SALNS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|194402471|gb|ACF62693.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|197936355|gb|ACH73688.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|206709733|emb|CAR34085.1| Histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326624341|gb|EGE30686.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 424

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/432 (12%), Positives = 116/432 (26%), Gaps = 45/432 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 AEVFGLQGPDIDAELIMLTARWWRALGISEHVSLELNSIGSLEARANYRDALVAFLEQHQ 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   ++  +   +A    + +    
Sbjct: 190 ETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHFAGLCKLLDAAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++                   +  I + A     + A   +  RL           
Sbjct: 310 ERLVLLV-------QAVNPEFIASPVVDIYLVAAGAQTQSAAMTLAERL----------- 351

Query: 384 MGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             E  G +             FA AD  G  + +++G   V+D  V +K   +G +  ++
Sbjct: 352 RDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVA 411

Query: 431 LEEVINYASHRF 442
            + V  +     
Sbjct: 412 QDSVAAHLRTLL 423


>gi|15827364|ref|NP_301627.1| glycyl-tRNA synthetase [Mycobacterium leprae TN]
 gi|221229841|ref|YP_002503257.1| glycyl-tRNA synthetase [Mycobacterium leprae Br4923]
 gi|13092913|emb|CAC30336.1| putative glycyl-tRNA synthase [Mycobacterium leprae]
 gi|219932948|emb|CAR70921.1| putative glycyl-tRNA synthase [Mycobacterium leprae Br4923]
          Length = 463

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 59/433 (13%), Positives = 131/433 (30%), Gaps = 36/433 (8%)

Query: 40  YSWLPLGQKALDNVNA-IIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-- 95
           + + PLG +  +N+     R     R   + +    +    +WV SG  + +   ++   
Sbjct: 36  WDYGPLGVEFKENIKRQWWRSVVTGREDVVGIDSSIILPRQVWVASGHLEIFHDPLVESL 95

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR----------- 144
           +  +  +A      +E        + +   R+ P T    Q     E             
Sbjct: 96  ITHKRYRADHLIEAYEAKHGQSPCNGLADIRD-PDTGEPGQWTEPREFNLMLKTYLGPIE 154

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              G+   R    +  +        +        +  +    R  +        +     
Sbjct: 155 TEEGLHYLRPETAQGIFINFANVVTTARRKPPFGIGQIGKSFRNEITPGNFIFRTREFEQ 214

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                F+  +   +   +     M + +     D  ++       ++ +     T D+  
Sbjct: 215 MEMEFFVEPSTARDWHQYWIDTRMQWYVE-LGIDPQNLRLFEHPKDKLSHYSDRTVDIEY 273

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           +  F   P  +     G+     F   T  +YS    + +   +   +   +     G  
Sbjct: 274 KFGFVGNPWGELE---GVANRTDFDLSTHARYSGVDLSFYDQVNDTRYTPYVIEPAAGLT 330

Query: 323 RVVAAVIESSHDGKGI------IWPDSVAPFKISLINIKA------HDQVCRDACEKIYA 370
           R   A +  ++           +   ++      L  IKA                 + A
Sbjct: 331 RSFMAFLIDAYTEDEAPNTRGGMDKRALLRLDPRLAPIKAAVLPLFRHVDLSPKARDLAA 390

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K   +  +DD G  IG ++   D +G P  V V  + + D+ V ++ R    +E ++
Sbjct: 391 ELRKCW-NSEFDDAGA-IGRRYRRQDEVGTPFCVTVDFESLDDNAVTVRERDAMTQERVA 448

Query: 431 LEEVINYASHRFS 443
           +  V +Y + R  
Sbjct: 449 MTNVADYLAVRLK 461


>gi|323170213|gb|EFZ55866.1| histidyl-tRNA synthetase [Escherichia coli LT-68]
          Length = 424

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 117/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK--VGCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELQGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|322831767|ref|YP_004211794.1| histidyl-tRNA synthetase [Rahnella sp. Y9602]
 gi|321166968|gb|ADW72667.1| histidyl-tRNA synthetase [Rahnella sp. Y9602]
          Length = 424

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 64/424 (15%), Positives = 135/424 (31%), Gaps = 29/424 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPEDTALWQRIEGSLKQVLGSYGYSEIRMPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FEDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHS----YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                  F L              + + +     H     +     E+     D    F+
Sbjct: 126 NQLGVEVFGLQGPDVDAELILLTARWWRALGISEHVALELNSIGSLEARADYRDALVAFL 185

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                   +  C +     P+   ++   DI +L +   +        S  H   L + L
Sbjct: 186 EQHKDKLDED-CKRRMYSNPLRVLDSKNPDIQTLLNDAPELGDYLDEESREHFAGLCELL 244

Query: 272 PEN------KRVSARGIEV--GHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYG 318
            ++       +   RG++     +F       G++ ++     + G    +      + G
Sbjct: 245 EQSGIPYTVNQRLVRGLDYYNRTVFEWVTSSLGSQGTVCAGGRYDGLV--EQLGGRATPG 302

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G    +  ++             +     +          V     E +   L ++   
Sbjct: 303 VGFAMGLERLVLLVQAVNPDFKAPATVDTYVISSGAGTQS-VAMQLAETLRDALPELKVM 361

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +   G     QFA AD  G  + +++G   V++ +V +K   +G +E ++  E++   
Sbjct: 362 TNY--GGGNFKKQFARADKWGARVALVLGETEVANQQVVVKDLQSGTQETLAQSEIVARL 419

Query: 439 SHRF 442
           +   
Sbjct: 420 ASML 423


>gi|294887331|ref|XP_002772056.1| glycyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239875994|gb|EER03872.1| glycyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 596

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 126/351 (35%), Gaps = 16/351 (4%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R   ++   +PF   QI L FR+E+ PR G++R REF M +   F
Sbjct: 235 FLRPETAQGMFVNFRRLLEQNGGKMPFAAAQIGLGFRNEIAPRAGLLRVREFPMAEIEHF 294

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                     ++K+    L +F          +   G +  DL+    V       +   
Sbjct: 295 VHPDHKDHPDFHKVADLKLPLFP------QHNQLTDGKLRTDLTLRQAVDIGMINNETLA 348

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                 F    +      ++     ++   A YA         L     E   V    I 
Sbjct: 349 YFMGRTFLFLVKAGVDGSMLRFRQHLKSEMAHYACDCWDAEALLSYGWTEINGVYELKIC 408

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD--------- 334
            G  +    +     + T K          +     G  R++  ++E +           
Sbjct: 409 TGARYNITKEMVKVKTVT-KRVQEVPFIPSVIEPAFGVGRIIYTILEHTFRSREMEDQEL 467

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
              +  P  VAP K+S++ I ++    + A  KI   L + G     DD G+ IG ++A 
Sbjct: 468 RCYLSLPPVVAPTKVSVLPISSNPTQFKPAMHKITDALKEHGISYKVDDSGQAIGKRYAR 527

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            D +G P  + +  + ++D  V ++ R +  +  + + +V +      ++ 
Sbjct: 528 TDEIGIPFGITIDFQSLNDDTVTLRERDSMSQIRLPIADVADLVYKLCTDR 578



 Score = 51.3 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAI-EMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     N+ A+ R        + E+    L    +   SG  + +   M++
Sbjct: 88  AGLYDFGPPGCALKANLEALWRRHFINHDNMLEIQCTCLTPEVVLKTSGHVEKFTDLMVK 147

Query: 96  LADRNDKAMIYGPTHEE 112
                D+        EE
Sbjct: 148 NEKNPDEYYRADKLLEE 164


>gi|57641497|ref|YP_183975.1| histidyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
 gi|68744300|sp|Q5JIM2|SYH_PYRKO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|57159821|dbj|BAD85751.1| histidyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
          Length = 436

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/435 (13%), Positives = 118/435 (27%), Gaps = 39/435 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G    LP        V   IRE        E+  PT +  +L+   SG  +   K++   
Sbjct: 9   GTRDLLPEEMAKRRWVFERIREVFEGFNFQEVLTPTFEYTELFKLRSG--EEVVKQLYAF 66

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE-- 154
            D+  + +   P     +  ++ +  ++       +Y   +   +E +        +   
Sbjct: 67  QDKGGRDISLRPDMTSSVARLYVNRFQNAPKPIKWYYIANMFRYEEPQSGRYREFWQAGV 126

Query: 155 -----------------FLM--KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
                            F          D T           F   L +   +GL  +  
Sbjct: 127 ELIGSDRVEADAEVIALFTQSYLAVGLEDFTVNIGDRILLDEFAKMLGVEDDIGLMRLID 186

Query: 196 RAE--SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
           + +  S         EF +  D  E  +   +      +P E     + +  +   +   
Sbjct: 187 KKDKMSREEFVGALREFGLNDDGVEKVLSLIEI---KGLPDEVLPKAEELFTSEEAKAEI 243

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGH--IFYFGTKYSLPMSATFKGADGKDHY 311
                  D+ +              ARG +     +F       L + +   G    +  
Sbjct: 244 KRLYELVDLLDAYGVSKWVRIDLGIARGFDYYTSVVFEAIAPNDLGIGSIGGGGRYDNLI 303

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
              G     A      +       +       +       +     D+  +    +I   
Sbjct: 304 EVFGGKPTPATGFAIGIERLIPILEWKGLLPEIKLRPDVYVIPIGDDREVKKTAIEITQG 363

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           L +       +      G +   A      LG P  V+VG K +   KV ++   +G ++
Sbjct: 364 LREATVRADIELT----GRKLRKALDYAGKLGVPYVVLVGKKDLEAGKVTLRDMKSGEQK 419

Query: 428 DMSLEEVINYASHRF 442
            +  E  +    +  
Sbjct: 420 SIEKERAVEEILNIL 434


>gi|332796370|ref|YP_004457870.1| glycyl-tRNA synthetase [Acidianus hospitalis W1]
 gi|332694105|gb|AEE93572.1| glycyl-tRNA synthetase [Acidianus hospitalis W1]
          Length = 570

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 7/143 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQV 360
             GK     +     G  R +   + +++    D   +  P  +AP+++++  +   D++
Sbjct: 417 ESGKRFIPHVVEPSFGVERCLYISVLNAYREKKDRIVLSLPREIAPYEVAVFPLLERDEL 476

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 +IY+++ +   D  +DD G  IG ++A AD +G P  + V  + + D+ V I+ 
Sbjct: 477 ISR-AREIYSKVKEK-FDAIFDDSG-SIGKRYARADEIGIPYAITVDPQTLQDNTVTIRD 533

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +  +  EE+IN     FS
Sbjct: 534 RDTWNQIRVKEEELINTLEKLFS 556



 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIRE---EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           G+Y   P+G +  + +  + R+   E+N    +E+  P +    ++  SG  +++   ++
Sbjct: 28  GLYDIGPIGTRIKNKIVQLWRKIFVEENSDFVVEIETPMITPKKVFEASGHLENFTDPIV 87

Query: 95  RLADRN 100
                +
Sbjct: 88  ECNKCH 93


>gi|254490108|ref|ZP_05103300.1| histidyl-tRNA synthetase [Methylophaga thiooxidans DMS010]
 gi|224464696|gb|EEF80953.1| histidyl-tRNA synthetase [Methylophaga thiooxydans DMS010]
          Length = 418

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 67/421 (15%), Positives = 132/421 (31%), Gaps = 30/421 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        V   ++   +  G  E+  P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDLLPEVTPYWQAVEGTMKTVLSGYGYQEIRFPIVEKTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            +     N     + +   FR E   +    R R+F
Sbjct: 70  FDDRNGDSLTLRPEGTAGCVRAAMQNG--MLNQTQRLWYMGPMFRHERPQKG---RYRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 ++  +          M     +     G+        S         E I   +
Sbjct: 125 HQLGVEAYGFSGPDIDAEMIMMTARLWKALGLTGISLQINSLGSTEARLAYREELIQYFE 184

Query: 216 TGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
             + Q+     +     P+   ++   ++ +LN    +      A S    E+L  +L +
Sbjct: 185 AHQEQLDEDSQRRLHSNPLRILDSKNPEMQALNEAAPKLIDHLDAESKADFEQLCHTLDK 244

Query: 274 NKRVSA------RGIEV--GHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                       RG++     +F       G++ ++     + G   +       + G  
Sbjct: 245 VGIRYEINPRLVRGLDYYSKTVFEWVTDQLGSQGTVCAGGRYDGLVAQLGGKDATAIGFA 304

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA-CEKIYARLSKVGCDV 379
                   +  + D         +A     L+ +     +      E +  +L  +    
Sbjct: 305 IGLERLIALLEATDA-----LPEIAQTDAYLVAVGDAAAIQAPLLAEALRDQLPALKLIT 359

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
                G    SQF  AD  G    +I+G + V++  + +K   TG +E +S  ++  Y S
Sbjct: 360 HC--GGGSFKSQFKRADRSGARWTLILGEEEVNNESIGVKTMATGEQETISWYDLAAYLS 417

Query: 440 H 440
            
Sbjct: 418 Q 418


>gi|255012924|ref|ZP_05285050.1| glycyl-tRNA synthetase [Bacteroides sp. 2_1_7]
 gi|298374179|ref|ZP_06984137.1| glycine--tRNA ligase [Bacteroides sp. 3_1_19]
 gi|298268547|gb|EFI10202.1| glycine--tRNA ligase [Bacteroides sp. 3_1_19]
          Length = 514

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 84/253 (33%), Gaps = 16/253 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       GE   +  K         +     D        E+  A YA  
Sbjct: 259 FRMREFEQMEMQFFVRPGEEIEWFKKWKSTRLKWHQALGLGDQKYRYHDHEKL-AHYANA 317

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     ++     E + + +R            K+S      F     + +   +    I
Sbjct: 318 ATDIEFEMPFGFKEVEGIHSRTNFDLSQHE---KFSGKKIQYFDPELNQSYTPYVIETSI 374

Query: 320 GAMR---------VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R              + +      +  P ++AP K++++ +   D    +  E+I  
Sbjct: 375 GVDRVFLSIMAGSYCEETLANGESRVVLKLPAALAPIKLAVLPLVKKD-GLPEKAEEIIN 433

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L        +D+    IG ++   D +G P  + V    + D+ V I+ R T  +E +S
Sbjct: 434 MLR-FDFRCQYDEKD-SIGKRYRRQDAIGTPYCITVDHDTLKDNCVTIRFRDTMEQERVS 491

Query: 431 LEEVINYASHRFS 443
           ++++ +  + + S
Sbjct: 492 IDKLHDIITEKVS 504


>gi|147920334|ref|YP_685893.1| glycyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
 gi|110621289|emb|CAJ36567.1| glycyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
          Length = 577

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 65/151 (43%), Gaps = 10/151 (6%)

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAH 357
           +G++    +     G  R++ +V+E ++D +         + +  +VAP  ++++ + + 
Sbjct: 422 NGENVIPHVVEPSYGVDRILYSVLEHAYDEEIVEGEGRVVMRFDRTVAPITVAVLPLLSK 481

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D +   A E I   L   G  V +D+ G  IG ++   D  G P  V V  + + D  V 
Sbjct: 482 DPLASRAAE-IARGLKAAGYFVEYDESG-TIGKRYRRNDEAGTPFCVTVDHQTIEDGTVT 539

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           ++ R +  +     + +    S      +P+
Sbjct: 540 VRDRDSMAQIRYPADGLAGLISELLCTGKPL 570



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 1/67 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + G Y + PLG      +    R       G  E+  PT+    ++  SG    +   M 
Sbjct: 27  ASGFYDYGPLGATLKRKIEDAWRRFYCVGEGFYEIEAPTIGVEAIFEASGHVGGFADPMT 86

Query: 95  RLADRND 101
                 +
Sbjct: 87  TCQKCKE 93


>gi|301312443|ref|ZP_07218359.1| glycine--tRNA ligase [Bacteroides sp. 20_3]
 gi|300829626|gb|EFK60280.1| glycine--tRNA ligase [Bacteroides sp. 20_3]
          Length = 514

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/479 (11%), Positives = 129/479 (26%), Gaps = 81/479 (16%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRY---------- 86
           +Y +   G +  +N+     +         + +         +W  SG            
Sbjct: 33  VYDYGQYGVELKNNIKKYWWDSMTLLHENVVGIDSAIFMHPTIWKASGHVDAFNDPLIDN 92

Query: 87  ---------------------DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
                                +   KE+ + A +   A       E     +      + 
Sbjct: 93  KDSKKRYRADVLIEDHLGKIEEKMNKEVAKAAKKFGDAFDEAKFRETNPRVLEHQAKWNE 152

Query: 126 RNLPFTFYQIQLKFR--------DELRPRFGVMRSREFLMKDAYSFDLTPEGSKH----- 172
            +  ++    +  F          E+       R+   + +    F      +       
Sbjct: 153 IHERYSKAMNESNFEDLRQLILDCEIVCPISGTRNWTEVRQFNLMFSTDMGSTADGATKI 212

Query: 173 ----------------SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA-- 214
                                 +       ++G            I      E + +   
Sbjct: 213 YLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFF 272

Query: 215 -DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
              GE   +  K         +     D        E+  A YA  +     ++     E
Sbjct: 273 VRPGEEIEWFKKWKSTRLKWHQALGLGDQKYRYHDHEKL-AHYANAAMDIEFEMPFGFKE 331

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR---------V 324
            + + +R            K+S      F     + +   +    IG  R          
Sbjct: 332 VEGIHSRTNFDLSQHE---KFSGKKIQYFDPELNQSYTPYVIETSIGVDRVFLSIMAGSY 388

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
               + +      +  P ++AP K++++ +   D    +  E+I   L        +D+ 
Sbjct: 389 CEETLANGESRVVLKLPAALAPIKLAVLPLVKKD-GLPEKAEEIINMLR-FDFRCQYDEK 446

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              IG ++   D +G P  + V    + D+ V I+ R T  +E +S++++ +  + + S
Sbjct: 447 D-SIGKRYRRQDAIGTPYCITVDHDTLKDNCVTIRFRDTMEQERVSIDKLHDIITEKVS 504


>gi|197285699|ref|YP_002151571.1| histidyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227356210|ref|ZP_03840599.1| histidyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
 gi|229558705|sp|B4EZT2|SYH_PROMH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|194683186|emb|CAR43824.1| histidyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227163674|gb|EEI48590.1| histidyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
          Length = 427

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/427 (13%), Positives = 113/427 (26%), Gaps = 32/427 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP   +    +   +++     G  E+  P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTRVWQKIENTLKQILAGYGFSEIRTPIVEHTPLFQRAIGEVTDVVEKEMYT 69

Query: 96  LADRND--KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVM 150
             DR +  +++   P +          H   Y      +Y     + +   + R R    
Sbjct: 70  FTDRGEDAQSLTLRPENTAGCVRAGIEHGLLYNQEQRLWYLGPMFRYERPQKGRYRQFHQ 129

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              E         D         + K       +   L                    E 
Sbjct: 130 LGAEVFGLQGPDIDAELIMLTARWWKALGIAEHVTLELNSIGSLEARAKYREALVAFLEQ 189

Query: 211 IVLADTGETQVFCSKD---FMDFPIPSENTDFDDIISLNSIV-----EQWTAPYAATSDV 262
            V     + +     +    +D   P   T  +D   L   +     E +    A    V
Sbjct: 190 HVDQLDEDCKRRMYSNPLRVLDSKNPEIQTLLNDAPELFDYLDDESREHFDGLCALLDAV 249

Query: 263 -HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               ++   L        R +        G++ ++     + G           +  +G 
Sbjct: 250 GITYRVNQRLVRGLDYYNRTVFEWVTSALGSQGTVCAGGRYDGLV--KQLGGHPTPAVGF 307

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL------SKV 375
              +  +I            D+                      E+I  +L      +  
Sbjct: 308 AMGMERMILLVQAVNPEFVADTHVADVYLASFGDNSQSAALMLAEEIRDQLPTLRLMTNH 367

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G              Q   AD  G  + +I+G   ++   V +K   +G +  +S  E+ 
Sbjct: 368 G--------KGNFKKQLGRADKHGAKIALILGEDEINAGTVAVKDLRSGEQTIVSRSELA 419

Query: 436 NYASHRF 442
              +   
Sbjct: 420 QQLTLLL 426


>gi|150390122|ref|YP_001320171.1| histidyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
 gi|149949984|gb|ABR48512.1| histidyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 419

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/426 (14%), Positives = 126/426 (29%), Gaps = 59/426 (13%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  I ++     G  E+  P  +  +L+        D   KEM    DR  +++   
Sbjct: 20  WHYVEKIAKDVAECFGFQEIRTPVFEHTELFERGIGETTDVVEKEMYTFEDRGKRSVTLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF------------ 155
           P     +   F  +       P   Y I   FR E        +  +F            
Sbjct: 80  PEGTAPVVRSFIENKLYADAQPTKLYYITPVFRYERPQAGRYRQHHQFGIEVFGASNASI 139

Query: 156 -----------------LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
                               +     +     K  YN++  +YL         +   R E
Sbjct: 140 DAEVIHVAMTIYQKLGLEKLEVRINSIGCPQCKEHYNEVLKTYLSNRIDNLCGTCQSRYE 199

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
             P+            ++ + Q+      +D+     +   D    + + +E    P+  
Sbjct: 200 RNPMRIIDCK-----VESCQEQLTDVPLMIDY---ICDECRDHFEGVQNHLEAIGVPF-- 249

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGS 316
                   +   +       ++          G K +L     +                
Sbjct: 250 -------TIDPKIVRGLDYYSKTAFEIITDEAGKKGTLCGGGRYDQLVEQCGGPATPGVG 302

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           +G+G  R + A+          I         I L+ +    ++      KI + L ++G
Sbjct: 303 FGMGLERAILAL------ETQGIVIPKPEGLDIFLVTMGEKAELQ---GFKILSELRQMG 353

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                D +     +QF  A+ L      I+G + +    V +K+  TG + ++S++++++
Sbjct: 354 LRADQDHLSRSTKAQFKYANKLMAQYTAIIGDEELERGTVSLKNMETGEQSEISIDKIVD 413

Query: 437 YASHRF 442
               + 
Sbjct: 414 ILRDKL 419


>gi|260598900|ref|YP_003211471.1| histidyl-tRNA synthetase [Cronobacter turicensis z3032]
 gi|260218077|emb|CBA32825.1| Histidyl-tRNA synthetase [Cronobacter turicensis z3032]
          Length = 424

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/423 (13%), Positives = 122/423 (28%), Gaps = 27/423 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGDTAIWQRIEGTLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            E         D         + +       +   L         E+     D    F+ 
Sbjct: 130 VEVFGLQGPDIDAELIMLTARWWRALGIAEHVSLELNS---IGSLEARANYRDALVAFLE 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                +    C +     P+   ++   D+ +L +            S  H   L   L 
Sbjct: 187 QH-VDKLDEDCKRRMYSNPLRVLDSKNPDVQALLNDAPMLGDYLDEESREHFAGLCAFLD 245

Query: 273 EN------KRVSARGIEV--GHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +        +   RG++     +F       G++ ++     + G   +       + G 
Sbjct: 246 DAGIAYTVNQRLVRGLDYYNRTVFEWVTTSLGSQGTVCAGGRYDGLVEQLGGRAAPAVGF 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                   ++          +          + +            E++   L       
Sbjct: 306 AMGLERLVLLVQ---AVNPEFTADPVVDIYLIASGNGTQSAAMQLAERVRDALPGCKLMT 362

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +   G     QFA AD  G  + +++G   V++ +V +K   +G ++ ++  E+  +  
Sbjct: 363 NY--GGGNFKKQFARADKWGARIALVLGEDEVANRQVVVKDLRSGEQQALAQSELAAHLQ 420

Query: 440 HRF 442
              
Sbjct: 421 TLL 423


>gi|331673969|ref|ZP_08374732.1| histidine--tRNA ligase [Escherichia coli TA280]
 gi|331069242|gb|EGI40634.1| histidine--tRNA ligase [Escherichia coli TA280]
          Length = 424

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 117/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NYGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|194432032|ref|ZP_03064321.1| histidyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|194419561|gb|EDX35641.1| histidyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|332089679|gb|EGI94780.1| histidyl-tRNA synthetase [Shigella dysenteriae 155-74]
          Length = 424

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 117/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETTIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|292669403|ref|ZP_06602829.1| histidine-tRNA ligase [Selenomonas noxia ATCC 43541]
 gi|292648964|gb|EFF66936.1| histidine-tRNA ligase [Selenomonas noxia ATCC 43541]
          Length = 421

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/409 (14%), Positives = 115/409 (28%), Gaps = 9/409 (2%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP    A   V  +IR+   R G  E+  P  +  +L+        D   KEM    DR 
Sbjct: 13  LPDAVGAWTYVENVIRDLCARYGYHEIRTPIFEHTELFQRGIGDGTDVVDKEMYTFTDRG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+++   P +       +  +           + I   FR +      +    +F ++  
Sbjct: 73  DRSLTLRPENTASAVRAYLQNKLYADGGLQKLFYIGSMFRYDRPQAGRMREFHQFGVEAI 132

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
                  +          ++ L +       +        P+  +   E+       E  
Sbjct: 133 GEAGPAADAETILLAFDVLTALGLTGLTLKLNSVGCPNCRPVYRERLQEYFKEY-LHELC 191

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA- 279
             C + +   P+   +   D   S  +     T    A    H  ++ D L         
Sbjct: 192 DDCQERYTRSPLRILDCKKDAERSFMAGAPAITDCLCAECADHFGQVKDYLTSAGISYTL 251

Query: 280 -----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                RG++      F   Y    + +     G+   +     G     V  A       
Sbjct: 252 DPRLVRGLDYYTRTAFEIAYPPLGAQSAVAGGGRYDGLVEELGGTPTPAVGFAAGLERVL 311

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                          + + +         A   +   L   G     D  G  + +Q   
Sbjct: 312 LALEQQNLVPEQPPAADVFLITLGDAASRAAFPLLHELRCGGVRALMDYGGRSMKAQMKQ 371

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           A+  G    VI+G   ++     ++  +   +E  SL++++        
Sbjct: 372 ANKSGARYAVILGEDELTQHAALVRDMMESTQESYSLDDIVRRLISEVK 420


>gi|256838464|ref|ZP_05543974.1| glycyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|256739383|gb|EEU52707.1| glycyl-tRNA synthetase [Parabacteroides sp. D13]
          Length = 514

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 84/253 (33%), Gaps = 16/253 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       GE   +  K         +     D        E+  A YA  
Sbjct: 259 FRMREFEQMEMQFFVRPGEEIEWFKKWKSTRLKWHQALGLGDEKYRYHDHEKL-AHYANA 317

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     ++     E + + +R            K+S      F     + +   +    I
Sbjct: 318 ATDIEFEMPFGFKEVEGIHSRTNFDLSQHE---KFSGKKIQYFDPELNQSYTPYVIETSI 374

Query: 320 GAMR---------VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R              + +      +  P ++AP K++++ +   D    +  E+I  
Sbjct: 375 GVDRVFLSIMAGSYCEETLANGESRVVLKLPAALAPIKLAVLPLVKKD-GLPEKAEEIIN 433

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L        +D+    IG ++   D +G P  + V    + D+ V I+ R T  +E +S
Sbjct: 434 MLR-FDFRCQYDEKD-SIGKRYRRQDAIGTPYCITVDHDTLKDNCVTIRFRDTMEQERVS 491

Query: 431 LEEVINYASHRFS 443
           ++++ +  + + S
Sbjct: 492 IDKLHDIITEKVS 504


>gi|167044442|gb|ABZ09118.1| putative tRNA synthetase class II core domain (G, H, P, S and T)
           [uncultured marine crenarchaeote HF4000_APKG6D9]
          Length = 485

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/464 (10%), Positives = 125/464 (26%), Gaps = 65/464 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G + + P G    +    + R E  R  G +E+    + S  ++  SG   ++   +++
Sbjct: 28  AGFWEYGPTGVGLKNKFLELWRRELIRRDGMLEIDGSQIMSKSVFEASGHLGNFADPIIK 87

Query: 96  LA--------DRNDKAMIYGPTHE------------EVMTDIFRSHIKSYRNLPFTFYQI 135
                     DR    +      E            +      +      +   F     
Sbjct: 88  CTKCNSTFRADRTIAEITKIEIPESADLVEFDNAILQNNIKCPKCKGDFDKTKNFNMMFK 147

Query: 136 QLKFRDELRPRFGVMRSREFLMK-----------------DAYSFDLTPEGSKHSYNKMF 178
                +E          +   +                              + S  ++ 
Sbjct: 148 VGIGPEEEEAYLRPETCQSIFVDFPRLYKTMRGKLPLGIGQVGKSFRNEIAPRQSLLRLR 207

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-------FCSKDFMDFP 231
             Y          +   + E      D        +D                   + + 
Sbjct: 208 EFYQAEIEVFCNPAKLDQVEKFDEIQDTILRIQTDSDPVAMTCKEAVESGVIPNKLVAYY 267

Query: 232 IPSENTDFDDII------SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
           +      ++             + ++  A YA  +     +      E    + R     
Sbjct: 268 LGILTEFYEKTGIDISKSRFRKLGDKEKAFYAEVAFDFEVETTIGWLELVACNYRSDYDL 327

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES------SHDGKGII 339
                  K S            +     +    +G  R +  ++E        H+   + 
Sbjct: 328 SSH---AKKSKEKFEVMDND--EKVLPHVFEISMGIDRSLYTILEHSLKEDKEHERIVLS 382

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
               ++P  + ++++   D   ++  ++IY  + +   D F D  G  IG ++   D +G
Sbjct: 383 LKPYLSPTHVGILSLVKKD-GLKEKTDEIYLNIKRK-FDAFLDHSGA-IGRRYRRLDEIG 439

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P  + V  + + D  + I+ R +  +  + + E+ +  S   +
Sbjct: 440 APFAITVDHQTLEDDTITIRKRDSMEQTRIKISELDSILSESVA 483


>gi|289522218|ref|ZP_06439072.1| histidine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504054|gb|EFD25218.1| histidine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 422

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/400 (15%), Positives = 113/400 (28%), Gaps = 33/400 (8%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G  E+ +P  +  +L+        D   KEM    DR  +++   P     M   +  H
Sbjct: 35  FGYNEVHLPLFEHTELFSRGIGDSTDVVEKEMYTFLDRAGRSLTLRPELTASMVRCYLEH 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             S +  P   +     FR E   +    R R+F   D  +   +           F  Y
Sbjct: 95  GMSKKVQPVKLWSAGPMFRYERPQKG---RYRQFWQLDVEAL-GSEAPEVDLEIIAFAIY 150

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD----------FMDFP 231
           L     L    + + +   P+      + +           C+             +D  
Sbjct: 151 LFNALGLSNLEVVINSVGCPVCRPGYRDALKRYVGSNFDALCNTCQNRFERNPLRILDCK 210

Query: 232 IPSENTDFDDIISL--NSIVEQWTAPYAATSDVH----NEKLFDSLPENKRVSARGIEVG 285
                    D   +     VE           +     N K   +L        +     
Sbjct: 211 NERCREIMKDAPGIVDYLCVECSEHFKRVKEGMTILGINYKEDKNLVRGLDYYTKTAFEV 270

Query: 286 HIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                G + ++     +          +V    +  G  R+V  +     D         
Sbjct: 271 LSGELGAQNAVCGGGRYDNLAETIGGPHVPGVGFAAGIERIVLTMEGQGCD--------- 321

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
                   + I   D + ++   K+   L +    V  D  G+ IGSQ   A      L 
Sbjct: 322 FGQQPGIDVFIVTADDLAKNKALKLLYDLRREQISVDMDYTGKSIGSQLKTASNKEAKLA 381

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            I+G   +    V +K    G + +++ +  I+Y     +
Sbjct: 382 CILGGVEIEKGVVTVKDLRKGSQSEVANDSFIDYVKANLA 421


>gi|72381901|ref|YP_291256.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
 gi|123746309|sp|Q46LS5|SYH_PROMT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|72001751|gb|AAZ57553.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
          Length = 426

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/429 (13%), Positives = 117/429 (27%), Gaps = 31/429 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP   +    V +I  E  +R G  E+  P ++  +L+        D  GKEM  
Sbjct: 9   GMVDLLPAQSQGWQKVESIALEHFSRAGLQEIRTPIIEQTELFSRGIGENTDVVGKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMR 151
             DR  ++    P     +      H    +  P   +     FR E       R     
Sbjct: 69  FDDRGGRSCTLRPEGTASVARSIVQHGLLNKG-PQRLWYRGPMFRYERPQAGRQRQFHQI 127

Query: 152 SREFLMKDAYSFDLT--PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
             EF+   +   D            +          + LG        +           
Sbjct: 128 GVEFVGLASVISDAEVISIAWNFLKDVGLNELTLEINSLGSNEDRNIFKEELKDWLNQRF 187

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---PYAATSDVHNE- 265
            ++  D+ +         +D    S      +  SL   +   +     Y     V+ + 
Sbjct: 188 DLLDEDSQKRINVNPLRILDSKNNSTKELLSEAPSLIDFLSNESKTRFDYLQELLVNLKI 247

Query: 266 --KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             ++  +L       +         + G++ ++     + G   +    Q  S G     
Sbjct: 248 PYEINYNLVRGLDYYSHTAFEITSDHLGSQATVCGGGRYDGLISELGGPQAPSIGWAIGM 307

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++    D         V              +       +I  +L      +  D 
Sbjct: 308 ERLIILAG--DKILQSKSPDVYVIH--------KGKKAEQLALEITCQLRSSNLIIELDY 357

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED------MSLEEVINY 437
            G     QF  AD       +++G   VS  ++ +K      +++       S  ++   
Sbjct: 358 SGSSFSKQFKRADKSRAKWALVIGEDEVSKGQLLMKKLRDKQKDEESREYIFSKSDLDQL 417

Query: 438 ASHRFSNNR 446
                +  +
Sbjct: 418 IKKLIAEKK 426


>gi|62181089|ref|YP_217506.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|75505635|sp|Q57LI7|SYH_SALCH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|62128722|gb|AAX66425.1| histidine tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322715576|gb|EFZ07147.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 424

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/432 (12%), Positives = 116/432 (26%), Gaps = 45/432 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 AEVFGLQGPDIDAELIMLTARWWRALGIAEHVSLELNSIGSLEARANYRDALVAFLEQHQ 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   ++  +   +A    + +    
Sbjct: 190 ETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDASALGDYLDDDSREHFAGLCKLLDAAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++                   +  I + A     + A   +  RL           
Sbjct: 310 ERLVLLV-------QAVNPEFIASPVVDIYLVAAGAQTQSAAMTLAERL----------- 351

Query: 384 MGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             E  G +             FA AD  G  + +++G   V+D  V +K   +G +  ++
Sbjct: 352 RDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVA 411

Query: 431 LEEVINYASHRF 442
            + V  +     
Sbjct: 412 QDSVAAHLRTLL 423


>gi|253574921|ref|ZP_04852261.1| histidyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251845967|gb|EES73975.1| histidyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 417

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/403 (14%), Positives = 123/403 (30%), Gaps = 21/403 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    R+   R    E+  P  +   L+        D   KEM    D+ D++M   
Sbjct: 23  WQFIEEKARDLCRRFNYREIRTPIFEQTSLFERGVGETTDIVEKEMYTFLDKGDRSMTLR 82

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  +           Y I   FR E        +  +F ++   + D   
Sbjct: 83  PEGTAGVVRSYVENKMYGEPDVSKLYYIGPMFRYERPQAGRQRQFHQFGVEAFGAIDPAI 142

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +    +    F   L +       +      S     +   EF++          C    
Sbjct: 143 DAEVVALGYQFCRELGLQGVKVEINSVGNPSSRAAYREKLLEFLLPM-KDSLCKDCQARI 201

Query: 228 MDFPIPSENTDFDDII------SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
              P+   +   D          L+S+ E+ T  +A   ++ +    D     + V    
Sbjct: 202 ERNPLRVLDCKTDQDKFDGAPSILDSLDEECTTHFAKVQELLSAMEIDYEINPRLVRGLD 261

Query: 282 IEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                 F +     G   ++     + G   +         G G      A+I    + +
Sbjct: 262 YYTHTAFEYKAQGIGAIDTIGGGGRYNGLVAEVGGPDQPGIGFGMGLERIALILEKQEIE 321

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                       + +  I   +   ++   +++ +L + G     D +G ++ +Q   AD
Sbjct: 322 LGAVKP------LDVYLIALGEAAEKEITTQLF-KLRQAGFSAERDYLGRKMKAQMKSAD 374

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +      I+G   +   ++ +K   +G +  + L E++N   
Sbjct: 375 RMQARYTAILGDDELQRGEIALKSMDSGEQRTVKLSELLNELQ 417


>gi|215487864|ref|YP_002330295.1| histidyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|312965430|ref|ZP_07779662.1| histidyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|331648211|ref|ZP_08349301.1| histidine--tRNA ligase [Escherichia coli M605]
 gi|254782329|sp|B7UGW0|SYH_ECO27 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|215265936|emb|CAS10345.1| histidyl tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|281179568|dbj|BAI55898.1| histidyl-tRNA synthetase [Escherichia coli SE15]
 gi|312289850|gb|EFR17738.1| histidyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|320662798|gb|EFX30130.1| histidyl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905]
 gi|330912289|gb|EGH40799.1| histidyl-tRNA synthetase [Escherichia coli AA86]
 gi|331043071|gb|EGI15211.1| histidine--tRNA ligase [Escherichia coli M605]
          Length = 424

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 117/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQVLLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|51893560|ref|YP_076251.1| histidyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
 gi|81692042|sp|Q67LN9|SYH_SYMTH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|51857249|dbj|BAD41407.1| histidyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
          Length = 432

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/429 (13%), Positives = 114/429 (26%), Gaps = 35/429 (8%)

Query: 38  GIYSWLP---LGQK---ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV--ESGRYDSY 89
           G    LP    G +       +  I RE     G  E+  P ++  DL++       D  
Sbjct: 8   GFNDILPGEQYGWRDSYRWQRLEEIFREVARLYGYQELRPPMVEYVDLFIHGVGATTDIV 67

Query: 90  GKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            KEM  +  R D      M   P     +   +  +       P   +     FR E   
Sbjct: 68  TKEMFNITPRGDDPDARRMAMRPEFTAGLVRAWLENGLYNNPQPTKIFAYGPAFRYENVQ 127

Query: 146 RFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSY-------------LRIFHRLGLK 191
           +        F   D   F    P                                +   +
Sbjct: 128 KGRFRG---FHQLDVEVFGAQDPAVDAEVIKLGLDVVARLGLTGLVVSVNSIGCPQCRPR 184

Query: 192 SIPMRAESG-PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                 +   P  G+L  +     +    ++   K   D P         D +  +    
Sbjct: 185 YRQALQDHFRPHLGELCEDCNTRFEKNPLRLLDCKRDADHPAQRTAPVTLDYLCDDCRRH 244

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                    +     ++   +        + +        G + +L     + G    + 
Sbjct: 245 WEGLLSHLAAMGIPYQIDTRIVRGLDYYTKTVFEVLHPKLGAQSALWGGGRYDGLI--EI 302

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                + G+G    +  V+    +              + +  +    +  R    K+  
Sbjct: 303 VGGKPTPGVGFGMGMERVLMVLEEEGLTAPFADRPRLDVFVATLG---EAARPVGLKLLY 359

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L   G     D +G  + +Q   A        VI+G   V      +KH   G +E + 
Sbjct: 360 ALRDAGLSADIDYLGRSLKAQMKYAGKQNSRYVVILGEDEVRQGVASVKHMDEGTQESVP 419

Query: 431 LEEVINYAS 439
           L+++I++  
Sbjct: 420 LDQIISHLR 428


>gi|150020638|ref|YP_001305992.1| histidyl-tRNA synthetase [Thermosipho melanesiensis BI429]
 gi|166228626|sp|A6LL06|SYH_THEM4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|149793159|gb|ABR30607.1| histidyl-tRNA synthetase [Thermosipho melanesiensis BI429]
          Length = 419

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 121/403 (30%), Gaps = 17/403 (4%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +    RE     G  E+  P  +  +L+V S     D   KEM    D+ D+++   P  
Sbjct: 22  IENTAREITRLYGYSEIRTPIFEQTELFVRSVGEETDIVQKEMYTFKDKGDRSITLRPEG 81

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
                  F  +      LP   + I   FR E        R R+F          +   +
Sbjct: 82  TAPTIRAFIENSMVATGLPKRLFYIGPMFRYERPQAG---RQRQFHQFGIELIGSSSSLA 138

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHEFIVLADTGETQVFCSKDFM 228
                 +   +L+    LGL    ++  S           + +    + +    C     
Sbjct: 139 DAEAIVVADRFLKS---LGLVDYTIKINSIGCEKCRAEYKKKLKEYYSDKLDKVCDDCKR 195

Query: 229 DFPIPSENTDFDDIISLN-SIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSARG 281
            +           +         + T         H E+  + L       E   +  RG
Sbjct: 196 RYNTNILRLLDCKVDVEYVKDAPKITDYLCDNCKKHYEETKNILDKLDINYEEDPLLVRG 255

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           ++  +   F   +    + +  G  G+   +     G     +  A+             
Sbjct: 256 LDYYNGIVFEIHHGKLGAQSAIGGGGRYDNLIKELGGQQTPSLGFAMGIERLIIAVKKEG 315

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             V   K + + +    +  R    KI   L   G  V ++ M   + +Q   A  L   
Sbjct: 316 IPVEEIKNNEVFVAHLGESARIEAIKISEELRDNGISVVFNTMERGLSAQLKHASRLNCR 375

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           L +IVG   +  + V +++  TG + ++  + ++         
Sbjct: 376 LCLIVGENELERNVVILRNMKTGEQIEIERDYIVGTTREWIDE 418


>gi|323188368|gb|EFZ73660.1| histidyl-tRNA synthetase [Escherichia coli RN587/1]
          Length = 424

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 118/421 (28%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + ++           + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRVLGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|168243301|ref|ZP_02668233.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194450295|ref|YP_002046580.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|229558729|sp|B4TD92|SYH_SALHS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|194408599|gb|ACF68818.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205337681|gb|EDZ24445.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 424

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/432 (12%), Positives = 115/432 (26%), Gaps = 45/432 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 AEVFGLQGPDIDAELIMLTARWWRALGIAEHVSLELNSIGSLEARANYRDALVAFLEQHQ 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D   L   ++  +   +A    + +    
Sbjct: 190 ETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPVLGDYLDDDSREHFAGLCKLLDAAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++                   +  I + A     + A   +  RL           
Sbjct: 310 ERLVLLV-------QAVNPEFIASPVVDIYLVAAGAQTQSAAMTLAERL----------- 351

Query: 384 MGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             E  G +             FA AD  G  + +++G   V+D  V +K   +G +  ++
Sbjct: 352 RDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVA 411

Query: 431 LEEVINYASHRF 442
            + V  +     
Sbjct: 412 QDSVAAHLRTLL 423


>gi|32307624|gb|AAP79217.1| threonyl-tRNA synthetase [Bigelowiella natans]
          Length = 147

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 60/151 (39%), Gaps = 7/151 (4%)

Query: 299 SATFKGADGKD-HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   DGK    + +     G++     ++    +     +P  ++P ++ ++ +   
Sbjct: 1   DLEYVSKDGKKERPIMVHRAIFGSIERFFGILV---ENTAGDFPVWLSPVQLKVLPVT-- 55

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               R  CE +  +   +G     D   +++G     A+L   P+  +VG K +  +++ 
Sbjct: 56  -DDFRPFCEDVVKKAKALGIRAEIDSSDDRLGKMIRNAELEKIPVVAVVGQKEIDSNQLA 114

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           I+ R  G     ++E++I   S      + +
Sbjct: 115 IRTRKGGDLGSFAVEDLIEKLSDAIKVGKEL 145


>gi|16761437|ref|NP_457054.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29140866|ref|NP_804208.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213028525|ref|ZP_03342972.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213161949|ref|ZP_03347659.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425332|ref|ZP_03358082.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213649664|ref|ZP_03379717.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213861387|ref|ZP_03385857.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289825427|ref|ZP_06544664.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|29427529|sp|Q8Z4P4|SYH_SALTI RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|25293366|pir||AI0821 histidine-tRNA ligase (EC 6.1.1.21) - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16503737|emb|CAD02725.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136491|gb|AAO68057.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 424

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/432 (12%), Positives = 115/432 (26%), Gaps = 45/432 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 AEVFGLQGPDIDAELIMLTARWWRALGISEHVSLELNSIGSLEARANYRDALVAFLEQHQ 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D   L   ++  +   +A    + +    
Sbjct: 190 ETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPVLGDYLDDDSREHFAGLCKLLDAAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++                   +  I + A     + A   +  RL           
Sbjct: 310 ERLVLLV-------QAVNPEFIASPVVDIYLVAAGAQTQSAAMTLAERL----------- 351

Query: 384 MGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             E  G +             FA AD  G  + +++G   V+D  V +K   +G +  ++
Sbjct: 352 RDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVA 411

Query: 431 LEEVINYASHRF 442
            + V  +     
Sbjct: 412 QDSVAAHLRTLL 423


>gi|237732493|ref|ZP_04562974.1| histidyl-tRNA synthetase [Citrobacter sp. 30_2]
 gi|226908032|gb|EEH93950.1| histidyl-tRNA synthetase [Citrobacter sp. 30_2]
          Length = 424

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/421 (13%), Positives = 117/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 VEVFGLQGPDIDAELIMLTARWWRALGISQHVSLELNSIGSLEARANYRDALVAYLELHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   ++  +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDDDSREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTSSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFNADPVVDIYLVASGADTQSAAMTLAERLRDEVPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + +++G   V+D  V +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVALVLGESEVADGTVVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|150009785|ref|YP_001304528.1| glycyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|149938209|gb|ABR44906.1| glycyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
          Length = 514

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 84/253 (33%), Gaps = 16/253 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       GE   +  K         +     D        E+  A YA  
Sbjct: 259 FRMREFEQMEMQFFVRPGEEIEWFKKWKSTRLKWHQALGLGDEKYRYHDHEKL-AHYANA 317

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     ++     E + + +R            K+S      F     + +   +    I
Sbjct: 318 ATDIEFEMPFGFKEVEGIHSRTNFDLSQHE---KFSGKKIQYFDPELNQSYTPYVIETSI 374

Query: 320 GAMR---------VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R              + +      +  P ++AP K++++ +   D    +  E+I  
Sbjct: 375 GVDRVFLSIMAGSYCEETLANGESRVVLKLPAALAPIKLAVLPLVKKD-GLPEKAEEIIN 433

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L        +D+    IG ++   D +G P  + V    + D+ V I+ R T  +E +S
Sbjct: 434 MLR-FDFRCQYDEKD-SIGKRYRRQDAIGTPYCITVDHDTLKDNCVTIRFRDTMEQERVS 491

Query: 431 LEEVINYASHRFS 443
           ++++ +  + + S
Sbjct: 492 IDKLHDIITEKVS 504


>gi|170292177|pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
           Complexed With A Histidyl-Adenylate Analogue
 gi|170292178|pdb|2EL9|B Chain B, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
           Complexed With A Histidyl-Adenylate Analogue
 gi|170292179|pdb|2EL9|C Chain C, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
           Complexed With A Histidyl-Adenylate Analogue
 gi|170292180|pdb|2EL9|D Chain D, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
           Complexed With A Histidyl-Adenylate Analogue
          Length = 431

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 117/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 17  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 76

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 77  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 136

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 137 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 196

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 197 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 256

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 257 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 316

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 317 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMT 369

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 370 NHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 429

Query: 442 F 442
            
Sbjct: 430 L 430


>gi|1942448|pdb|1HTT|A Chain A, Histidyl-Trna Synthetase
 gi|1942449|pdb|1HTT|B Chain B, Histidyl-Trna Synthetase
 gi|1942450|pdb|1HTT|C Chain C, Histidyl-Trna Synthetase
 gi|1942451|pdb|1HTT|D Chain D, Histidyl-Trna Synthetase
          Length = 423

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 117/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 9   GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 69  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 128

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 129 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 188

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 189 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 248

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 249 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 308

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 309 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMT 361

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 362 NHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 421

Query: 442 F 442
            
Sbjct: 422 L 422


>gi|15803037|ref|NP_289067.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 EDL933]
 gi|15832630|ref|NP_311403.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|16130439|ref|NP_417009.1| histidyl tRNA synthetase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|26248878|ref|NP_754918.1| histidyl-tRNA synthetase [Escherichia coli CFT073]
 gi|89109320|ref|AP_003100.1| histidyl tRNA synthetase [Escherichia coli str. K-12 substr. W3110]
 gi|91211840|ref|YP_541826.1| histidyl-tRNA synthetase [Escherichia coli UTI89]
 gi|110642679|ref|YP_670409.1| histidyl-tRNA synthetase [Escherichia coli 536]
 gi|117624743|ref|YP_853656.1| histidyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|157155202|ref|YP_001463836.1| histidyl-tRNA synthetase [Escherichia coli E24377A]
 gi|157161989|ref|YP_001459307.1| histidyl-tRNA synthetase [Escherichia coli HS]
 gi|168748427|ref|ZP_02773449.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|168756286|ref|ZP_02781293.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|168761124|ref|ZP_02786131.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|168768606|ref|ZP_02793613.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|168773572|ref|ZP_02798579.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|168778480|ref|ZP_02803487.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|168787860|ref|ZP_02812867.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|168798885|ref|ZP_02823892.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|170019203|ref|YP_001724157.1| histidyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|170082124|ref|YP_001731444.1| histidyl tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|170682103|ref|YP_001744702.1| histidyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|188493703|ref|ZP_03000973.1| histidyl-tRNA synthetase [Escherichia coli 53638]
 gi|191167687|ref|ZP_03029496.1| histidyl-tRNA synthetase [Escherichia coli B7A]
 gi|191172621|ref|ZP_03034160.1| histidyl-tRNA synthetase [Escherichia coli F11]
 gi|193064075|ref|ZP_03045160.1| histidyl-tRNA synthetase [Escherichia coli E22]
 gi|193068437|ref|ZP_03049400.1| histidyl-tRNA synthetase [Escherichia coli E110019]
 gi|194427379|ref|ZP_03059929.1| histidyl-tRNA synthetase [Escherichia coli B171]
 gi|194437576|ref|ZP_03069672.1| histidyl-tRNA synthetase [Escherichia coli 101-1]
 gi|195936656|ref|ZP_03082038.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024]
 gi|208808608|ref|ZP_03250945.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208813413|ref|ZP_03254742.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208819784|ref|ZP_03260104.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209398087|ref|YP_002271984.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|217327485|ref|ZP_03443568.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|218555039|ref|YP_002387952.1| histidyl-tRNA synthetase [Escherichia coli IAI1]
 gi|218559440|ref|YP_002392353.1| histidyl-tRNA synthetase [Escherichia coli S88]
 gi|218690634|ref|YP_002398846.1| histidyl-tRNA synthetase [Escherichia coli ED1a]
 gi|218701024|ref|YP_002408653.1| histidyl-tRNA synthetase [Escherichia coli IAI39]
 gi|227887549|ref|ZP_04005354.1| histidine--tRNA ligase [Escherichia coli 83972]
 gi|237705024|ref|ZP_04535505.1| histidyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|238901679|ref|YP_002927475.1| histidyl tRNA synthetase [Escherichia coli BW2952]
 gi|253772592|ref|YP_003035423.1| histidyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254162488|ref|YP_003045596.1| histidyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|254794460|ref|YP_003079297.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|256021800|ref|ZP_05435665.1| histidyl-tRNA synthetase [Escherichia sp. 4_1_40B]
 gi|260845144|ref|YP_003222922.1| histidyl tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|260856608|ref|YP_003230499.1| histidyl tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|260869203|ref|YP_003235605.1| histidyl tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|261223054|ref|ZP_05937335.1| histidyl tRNA synthetase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259395|ref|ZP_05951928.1| histidyl tRNA synthetase [Escherichia coli O157:H7 str. FRIK966]
 gi|291283735|ref|YP_003500553.1| Histidyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|293410928|ref|ZP_06654504.1| histidyl-tRNA synthetase [Escherichia coli B354]
 gi|293415779|ref|ZP_06658422.1| histidyl-tRNA synthetase [Escherichia coli B185]
 gi|297518016|ref|ZP_06936402.1| histidyl-tRNA synthetase [Escherichia coli OP50]
 gi|300817716|ref|ZP_07097931.1| histidyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|300820816|ref|ZP_07100966.1| histidyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300904312|ref|ZP_07122169.1| histidyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300927123|ref|ZP_07142871.1| histidyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|300930154|ref|ZP_07145575.1| histidyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300940235|ref|ZP_07154833.1| histidyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|300981976|ref|ZP_07175822.1| histidyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|300998070|ref|ZP_07181930.1| histidyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|301022374|ref|ZP_07186261.1| histidyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|301024746|ref|ZP_07188386.1| histidyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|301047147|ref|ZP_07194242.1| histidyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|301302871|ref|ZP_07208999.1| histidyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|301330395|ref|ZP_07223037.1| histidyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|306814416|ref|ZP_07448578.1| histidyl-tRNA synthetase [Escherichia coli NC101]
 gi|307312491|ref|ZP_07592124.1| histidyl-tRNA synthetase [Escherichia coli W]
 gi|309794439|ref|ZP_07688862.1| histidyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|331658659|ref|ZP_08359603.1| histidine--tRNA ligase [Escherichia coli TA206]
 gi|331664077|ref|ZP_08364987.1| histidine--tRNA ligase [Escherichia coli TA143]
 gi|331678505|ref|ZP_08379180.1| histidine--tRNA ligase [Escherichia coli H591]
 gi|331684162|ref|ZP_08384758.1| histidine--tRNA ligase [Escherichia coli H299]
 gi|46397736|sp|P60906|SYH_ECOLI RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46397737|sp|P60907|SYH_ECOL6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46397738|sp|P60908|SYH_ECO57 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123048980|sp|Q0TEX1|SYH_ECOL5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123387854|sp|Q1R8L9|SYH_ECOUT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166227966|sp|A1AE52|SYH_ECOK1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166980045|sp|A7ZPV7|SYH_ECO24 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166980046|sp|A8A320|SYH_ECOHS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189082294|sp|B1IWE7|SYH_ECOLC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|226737070|sp|B7MHZ9|SYH_ECO45 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|226737071|sp|B7NRG4|SYH_ECO7I RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|226737072|sp|B7M7L8|SYH_ECO8A RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|226737074|sp|B1LNG9|SYH_ECOSM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558670|sp|B5Z0Y3|SYH_ECO5E RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558671|sp|B1XAY9|SYH_ECODH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|254782331|sp|B7MYE9|SYH_ECO81 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|259511946|sp|C4ZX89|SYH_ECOBW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|2781066|pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
 gi|2781067|pdb|1KMM|B Chain B, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
 gi|2781068|pdb|1KMM|C Chain C, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
 gi|2781069|pdb|1KMM|D Chain D, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
 gi|2781070|pdb|1KMN|A Chain A, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
 gi|2781071|pdb|1KMN|B Chain B, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
 gi|2781072|pdb|1KMN|C Chain C, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
 gi|2781073|pdb|1KMN|D Chain D, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
 gi|12516905|gb|AAG57624.1|AE005480_11 histidine tRNA synthetase [Escherichia coli O157:H7 str. EDL933]
 gi|26109284|gb|AAN81486.1|AE016764_168 Histidyl-tRNA synthetase [Escherichia coli CFT073]
 gi|146372|gb|AAA03226.1| histidine-tRNA synthetase [Escherichia coli]
 gi|1788861|gb|AAC75567.1| histidyl tRNA synthetase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1805574|dbj|BAA16401.1| histidyl tRNA synthetase [Escherichia coli str. K12 substr. W3110]
 gi|13362846|dbj|BAB36799.1| histidine tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|91073414|gb|ABE08295.1| histidine tRNA synthetase [Escherichia coli UTI89]
 gi|110344271|gb|ABG70508.1| histidyl-tRNA synthetase [Escherichia coli 536]
 gi|115513867|gb|ABJ01942.1| histidyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|157067669|gb|ABV06924.1| histidyl-tRNA synthetase [Escherichia coli HS]
 gi|157077232|gb|ABV16940.1| histidyl-tRNA synthetase [Escherichia coli E24377A]
 gi|169754131|gb|ACA76830.1| histidyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|169889959|gb|ACB03666.1| histidyl tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|170519821|gb|ACB17999.1| histidyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|187770705|gb|EDU34549.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|188017124|gb|EDU55246.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|188488902|gb|EDU64005.1| histidyl-tRNA synthetase [Escherichia coli 53638]
 gi|189003447|gb|EDU72433.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189356659|gb|EDU75078.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|189362191|gb|EDU80610.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|189368474|gb|EDU86890.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|189372265|gb|EDU90681.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|189378621|gb|EDU97037.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|190902286|gb|EDV62026.1| histidyl-tRNA synthetase [Escherichia coli B7A]
 gi|190907094|gb|EDV66694.1| histidyl-tRNA synthetase [Escherichia coli F11]
 gi|192929310|gb|EDV82919.1| histidyl-tRNA synthetase [Escherichia coli E22]
 gi|192958389|gb|EDV88829.1| histidyl-tRNA synthetase [Escherichia coli E110019]
 gi|194414700|gb|EDX30972.1| histidyl-tRNA synthetase [Escherichia coli B171]
 gi|194423382|gb|EDX39373.1| histidyl-tRNA synthetase [Escherichia coli 101-1]
 gi|208728409|gb|EDZ78010.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208734690|gb|EDZ83377.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208739907|gb|EDZ87589.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209159487|gb|ACI36920.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|209763388|gb|ACI80006.1| histidine tRNA synthetase [Escherichia coli]
 gi|209763390|gb|ACI80007.1| histidine tRNA synthetase [Escherichia coli]
 gi|209763392|gb|ACI80008.1| histidine tRNA synthetase [Escherichia coli]
 gi|209763394|gb|ACI80009.1| histidine tRNA synthetase [Escherichia coli]
 gi|209763396|gb|ACI80010.1| histidine tRNA synthetase [Escherichia coli]
 gi|217319852|gb|EEC28277.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|218361807|emb|CAQ99406.1| histidyl tRNA synthetase [Escherichia coli IAI1]
 gi|218366209|emb|CAR03957.1| histidyl tRNA synthetase [Escherichia coli S88]
 gi|218371010|emb|CAR18838.1| histidyl tRNA synthetase [Escherichia coli IAI39]
 gi|218428198|emb|CAR09115.2| histidyl tRNA synthetase [Escherichia coli ED1a]
 gi|222034225|emb|CAP76966.1| Histidyl-tRNA synthetase [Escherichia coli LF82]
 gi|226901390|gb|EEH87649.1| histidyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|227835899|gb|EEJ46365.1| histidine--tRNA ligase [Escherichia coli 83972]
 gi|238861425|gb|ACR63423.1| histidyl tRNA synthetase [Escherichia coli BW2952]
 gi|242378112|emb|CAQ32885.1| histidyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|253323636|gb|ACT28238.1| histidyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974389|gb|ACT40060.1| histidyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|253978556|gb|ACT44226.1| histidyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|254593860|gb|ACT73221.1| histidyl tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|257755257|dbj|BAI26759.1| histidyl tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|257760291|dbj|BAI31788.1| histidyl tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|257765559|dbj|BAI37054.1| histidyl tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|260448406|gb|ACX38828.1| histidyl-tRNA synthetase [Escherichia coli DH1]
 gi|284922464|emb|CBG35551.1| histidyl-tRNA synthetase [Escherichia coli 042]
 gi|290763608|gb|ADD57569.1| Histidyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|291433427|gb|EFF06406.1| histidyl-tRNA synthetase [Escherichia coli B185]
 gi|291471396|gb|EFF13880.1| histidyl-tRNA synthetase [Escherichia coli B354]
 gi|294493901|gb|ADE92657.1| histidyl-tRNA synthetase [Escherichia coli IHE3034]
 gi|299881273|gb|EFI89484.1| histidyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|300300933|gb|EFJ57318.1| histidyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|300304049|gb|EFJ58569.1| histidyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|300396415|gb|EFJ79953.1| histidyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|300403744|gb|EFJ87282.1| histidyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300408871|gb|EFJ92409.1| histidyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|300416893|gb|EFK00204.1| histidyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|300454931|gb|EFK18424.1| histidyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|300461960|gb|EFK25453.1| histidyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300526569|gb|EFK47638.1| histidyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300529704|gb|EFK50766.1| histidyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|300841806|gb|EFK69566.1| histidyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|300843624|gb|EFK71384.1| histidyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|305851810|gb|EFM52262.1| histidyl-tRNA synthetase [Escherichia coli NC101]
 gi|306907414|gb|EFN37918.1| histidyl-tRNA synthetase [Escherichia coli W]
 gi|307554537|gb|ADN47312.1| histidyl-tRNA synthetase [Escherichia coli ABU 83972]
 gi|307625930|gb|ADN70234.1| histidyl-tRNA synthetase [Escherichia coli UM146]
 gi|308121895|gb|EFO59157.1| histidyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|309702846|emb|CBJ02177.1| histidyl-tRNA synthetase [Escherichia coli ETEC H10407]
 gi|312947091|gb|ADR27918.1| histidyl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315061833|gb|ADT76160.1| histidyl tRNA synthetase [Escherichia coli W]
 gi|315137138|dbj|BAJ44297.1| histidyl-tRNA synthetase [Escherichia coli DH1]
 gi|315256534|gb|EFU36502.1| histidyl-tRNA synthetase [Escherichia coli MS 85-1]
 gi|315288066|gb|EFU47466.1| histidyl-tRNA synthetase [Escherichia coli MS 110-3]
 gi|315292446|gb|EFU51798.1| histidyl-tRNA synthetase [Escherichia coli MS 153-1]
 gi|315300479|gb|EFU59708.1| histidyl-tRNA synthetase [Escherichia coli MS 16-3]
 gi|315615773|gb|EFU96405.1| histidyl-tRNA synthetase [Escherichia coli 3431]
 gi|320180504|gb|EFW55435.1| Histidyl-tRNA synthetase [Shigella boydii ATCC 9905]
 gi|320188847|gb|EFW63506.1| Histidyl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212]
 gi|320196351|gb|EFW70975.1| Histidyl-tRNA synthetase [Escherichia coli WV_060327]
 gi|320640858|gb|EFX10346.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. G5101]
 gi|320646301|gb|EFX15228.1| histidyl-tRNA synthetase [Escherichia coli O157:H- str. 493-89]
 gi|320651806|gb|EFX20186.1| histidyl-tRNA synthetase [Escherichia coli O157:H- str. H 2687]
 gi|320657192|gb|EFX25001.1| histidyl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320667602|gb|EFX34517.1| histidyl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61]
 gi|323159384|gb|EFZ45369.1| histidyl-tRNA synthetase [Escherichia coli E128010]
 gi|323177362|gb|EFZ62950.1| histidyl-tRNA synthetase [Escherichia coli 1180]
 gi|323377586|gb|ADX49854.1| histidyl-tRNA synthetase [Escherichia coli KO11]
 gi|323936407|gb|EGB32697.1| histidyl-tRNA synthetase [Escherichia coli E1520]
 gi|323941224|gb|EGB37409.1| histidyl-tRNA synthetase [Escherichia coli E482]
 gi|323949174|gb|EGB45065.1| histidyl-tRNA synthetase [Escherichia coli H252]
 gi|323955755|gb|EGB51513.1| histidyl-tRNA synthetase [Escherichia coli H263]
 gi|323961330|gb|EGB56942.1| histidyl-tRNA synthetase [Escherichia coli H489]
 gi|323967962|gb|EGB63374.1| histidyl-tRNA synthetase [Escherichia coli M863]
 gi|323971073|gb|EGB66321.1| histidyl-tRNA synthetase [Escherichia coli TA007]
 gi|323977303|gb|EGB72389.1| histidyl-tRNA synthetase [Escherichia coli TW10509]
 gi|324008522|gb|EGB77741.1| histidyl-tRNA synthetase [Escherichia coli MS 57-2]
 gi|324011229|gb|EGB80448.1| histidyl-tRNA synthetase [Escherichia coli MS 60-1]
 gi|324118142|gb|EGC12039.1| histidyl-tRNA synthetase [Escherichia coli E1167]
 gi|326340312|gb|EGD64116.1| Histidyl-tRNA synthetase [Escherichia coli O157:H7 str. 1125]
 gi|326344996|gb|EGD68740.1| Histidyl-tRNA synthetase [Escherichia coli O157:H7 str. 1044]
 gi|327252221|gb|EGE63893.1| histidyl-tRNA synthetase [Escherichia coli STEC_7v]
 gi|331054324|gb|EGI26351.1| histidine--tRNA ligase [Escherichia coli TA206]
 gi|331059876|gb|EGI31853.1| histidine--tRNA ligase [Escherichia coli TA143]
 gi|331074965|gb|EGI46285.1| histidine--tRNA ligase [Escherichia coli H591]
 gi|331079114|gb|EGI50316.1| histidine--tRNA ligase [Escherichia coli H299]
 gi|332087961|gb|EGI93086.1| histidyl-tRNA synthetase [Shigella boydii 5216-82]
 gi|332344386|gb|AEE57720.1| histidyl-tRNA synthetase HisS [Escherichia coli UMNK88]
          Length = 424

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 117/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|325290214|ref|YP_004266395.1| histidyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965615|gb|ADY56394.1| histidyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
          Length = 422

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 71/408 (17%), Positives = 121/408 (29%), Gaps = 21/408 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   IR+     G  E+  P  ++ +L+        D   KEM    D+ +++M   
Sbjct: 20  WHVLEGQIRKICEEYGFQEIRTPIFEATELFQRGVGETTDIVNKEMYTFQDKGNRSMTLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  +       P   Y     FR E        R R+F    A  F    
Sbjct: 80  PEGTAAVCRAFVENKLYALPQPVKLYYRGPMFRYENTQAG---RFRQFSQFGAEVFGGED 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHEFIVLADTGETQV 221
                           +F+RLGLK + ++  S                F+      E   
Sbjct: 137 PLVDAEV---IQLVWELFNRLGLKDLVIQINSVGCPVCRAEHKSKLQAFLEPK-KEELCA 192

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV---- 277
            C   F   P+   +        L            A    H  KL + L          
Sbjct: 193 DCQSRFDRNPLRILDCKSKHCKELIKGAPTILEMLCADCRDHFTKLQEYLEAVGIAYVVD 252

Query: 278 --SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               RG++      F        + +     G+   +     G     +  A+       
Sbjct: 253 AGMVRGLDYYRKTAFEVLVREIGAQSAICGGGRYDGLVEEIGGPSTPGIGFAMGIERVIS 312

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +A  +   + I A  +  R    K+ + L K G   F D +G  + SQ   A
Sbjct: 313 ALESQKIDIAAEQAESVTIIALGEAARLESFKLVSVLRKRGIKSFLDVLGRNMKSQMKAA 372

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D  G  + VI+G   ++     ++   TG + ++ L+ +       F 
Sbjct: 373 DRAGSKIAVIIGEDELARKTAVLRDMKTGGQAEIPLDLLAEKIEELFK 420


>gi|167623300|ref|YP_001673594.1| histidyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
 gi|189082310|sp|B0TLI5|SYH_SHEHH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|167353322|gb|ABZ75935.1| histidyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
          Length = 424

 Score = 98.7 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/424 (14%), Positives = 126/424 (29%), Gaps = 28/424 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        +  ++RE     G  E+  P ++S DL+  S G   D   KEM  
Sbjct: 10  GMNDILPTQSPLWQKLETVLRETVGSYGYSEIRTPIVESTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y +   FR E   +    R R+F
Sbjct: 70  FEDRNGDSLTLRPEGTASTVRAGNEHGLLYNQEQRLWY-MGPMFRHERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNK----------MFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
                  + +                     +        + LG            I   
Sbjct: 126 HQFGVEVYGIPTADIDAEVLMLSAKLWEKLGITEHVTLELNTLGDVEERAAYRDALIAFL 185

Query: 206 LSHEFIVLADTGETQVFCSKDFMD-FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             H+ ++  D+           +D      +    D  + ++   E   + ++   ++  
Sbjct: 186 EQHKEVLDEDSQRRMYSNPLRVLDSKNADVQALLADAPVLMDYFGEDTRSHFSHLCELLE 245

Query: 265 EKLFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                     + V         +F       G++ ++     + G  G+       + G 
Sbjct: 246 AVGIQYTINPRLVRGLDYYNRTVFEWVTSSLGSQGTVLAGGRYDGLVGQLGGKPTPAVGF 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                   ++  + +    I P           N +          +++ A L       
Sbjct: 306 AMGLERIVLLLETLELDKDIGPSVDVYVTAMGDNCRV---EAIKIAQELRASLPTAKVMS 362

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYA 438
                G     Q   AD  G  + +++G   +++++V +KH R    +E ++ + +  Y 
Sbjct: 363 HC--GGGNFKKQMKRADKSGATVALVIGEDELANNQVAVKHLREDKAQELVARDALATYI 420

Query: 439 SHRF 442
           +   
Sbjct: 421 AELI 424


>gi|206580753|ref|YP_002237136.1| histidyl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|229558688|sp|B5XNL6|SYH_KLEP3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|206569811|gb|ACI11587.1| histidyl-tRNA synthetase [Klebsiella pneumoniae 342]
          Length = 424

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/421 (12%), Positives = 117/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETALWQRIEGSLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYVGPMFRHERPQKGRYRQFHQIG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +       
Sbjct: 130 AEVFGLQGPDIDAELIMLTARWWRELGISDHVSLELNSIGSLEARANYRDALVAYLEQFT 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA------TSDVH 263
             +  D+           +D   P      +D  +L   +++ +  + A           
Sbjct: 190 DKLDEDSKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDEESKAHFAGLCALLDDAGI 249

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L        R +        G++ ++     + G   +         G     
Sbjct: 250 RYTVNQRLVRGLDYYNRTVFEWVTTSLGSQGTVCAGGRYDGLVEQLGGRATPGVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A  ++  ++     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGTDTQSAAMRLAEQVRDALPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + ++VG   ++D  V +K   +G +  ++ E V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARIALVVGESEIADGNVVVKDLRSGEQTTVTQESVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|154493369|ref|ZP_02032689.1| hypothetical protein PARMER_02706 [Parabacteroides merdae ATCC
           43184]
 gi|154086579|gb|EDN85624.1| hypothetical protein PARMER_02706 [Parabacteroides merdae ATCC
           43184]
          Length = 514

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 112/355 (31%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   +D   K  +   T + +  +           +PF   QI   FR+E+  R  
Sbjct: 198 FSTEMGSTSDGAMKVYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      + +   + L+    +GL             G+  +
Sbjct: 258 IFRMREFEQMEMQFFVR-PGEEMEWFKQWKATRLKWHQAMGL-------------GNEKY 303

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            +             +    + P                        +     +H+   F
Sbjct: 304 RYHDHEKLAHYANAATDIEFEMPF----------------------GFKEVEGIHSRTNF 341

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     K         G    +           +             S   G+       
Sbjct: 342 DLSQHEK-------FSGKKIQYFDPELNQSYTPYVIETSIGVDRVFLSVMAGSY--CEET 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P ++AP K++++ +   D    +  E+I   L        +D+    I
Sbjct: 393 LENGETRVVLKLPAALAPIKLAVLPLVKKD-GLPEKAEEIMKMLR-FDFRCQYDEKD-SI 449

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  + V    + D+ V I+ R T  +E +S++++ +  S + S
Sbjct: 450 GKRYRRQDAIGTPYCITVDHDTLKDNCVTIRFRDTMEQERVSIDKLHDIISEKVS 504


>gi|282162921|ref|YP_003355306.1| truncated threonyl-tRNA synthetase [Methanocella paludicola SANAE]
 gi|282155235|dbj|BAI60323.1| truncated threonyl-tRNA synthetase [Methanocella paludicola SANAE]
          Length = 477

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 72/448 (16%), Positives = 155/448 (34%), Gaps = 51/448 (11%)

Query: 8   LPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE-QNRTGA 66
           +P ++E P    +  H+L    G       G + + P G    + +     +   NR  A
Sbjct: 61  MPPMKEPPSIKIMQGHEL---VGYEPSSDSGNFRFYPKGYLIFELLRDWAYDIAINRFKA 117

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLA--DRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           I++  P L   D      +  ++ +    +   D  +K  I     +  +  I +    S
Sbjct: 118 IQVDSPLLFDWDDPQIKEQAGTFHERHYTVKAPDHPEKDFILRFAGDFGLFKIMKDATIS 177

Query: 125 YRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           YRNLP   Y+    FR E      G+ R R F M D + F    +   + Y +++ +Y  
Sbjct: 178 YRNLPLRMYEFSKSFRYERDGELSGLKRLRAFHMPDIHCFCRDIDEGWNEYQELYRNYAD 237

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           +    G++   +                        ++  S    +    ++   + +  
Sbjct: 238 LCDASGVEYAVV-----------------------FRIVDSFYLQNKSRIADLVKYSNTP 274

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
           +   ++      +A  ++        S           I++  +     K +      + 
Sbjct: 275 AFVEVLSDMKHYWAVKNEFQGVDSTRSC----------IQLSTV-QLDVKDAAVYGIDYT 323

Query: 304 GADGKDHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            +DGK     +    IG   R   +++E +   +    P  ++P ++ +I +    +   
Sbjct: 324 DSDGKKKGCIICHSSIGSIERWYYSILEEALKHETPTLPAWLSPTQVRIIPV---SEKQL 380

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           + C+ +     +V  D       + +  + A A +   P   +VG K V      +  R 
Sbjct: 381 NYCKYLDIDGVRVDVDDSD----DTLSKKIARASMEWVPYVAVVGDKEVESGLFSVSIRQ 436

Query: 423 TGIREDMSLEEVINYASHRFSNN--RPV 448
           +G R  M+ +E+      + +    RP+
Sbjct: 437 SGKRVSMTRDELALEVKKKCAGRPYRPL 464


>gi|78188020|ref|YP_378358.1| glycyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
 gi|78170219|gb|ABB27315.1| glycyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
          Length = 489

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/470 (13%), Positives = 132/470 (28%), Gaps = 65/470 (13%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSAD 78
           R G +   S         + + PLG +    +  +      R     +       + +  
Sbjct: 29  RRGFVFPSSEIYEGLSACFDYGPLGSEMKRTIKELWWNAMTRR-HQNIVGIDASIMMNPR 87

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV------------------MTDIFRS 120
           +W  SG   S+   M+       +        E                      +   S
Sbjct: 88  VWEASGHVASFNDPMIDDKT-TKRRYRADHLIENHIEKLRRDGKEEALQRVQATYEAVGS 146

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFG--------VMRSREFLMKDAYSFDLTPEGSKH 172
              S R L        +K  D     +            +   L   +    L PE ++ 
Sbjct: 147 TEDSNRALYELILAEGIKAPDTGSADWTEVRQFNLMFQCNMGALSDRSGIVYLRPETAQG 206

Query: 173 SYNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK--DFMD 229
            +            +     +   +A    I        +V  +  E Q F         
Sbjct: 207 IFVNFHNVREASRMKVPFGIAQIGKAFRNEIVKGNFTFRMVEFEQMEMQYFVKPGTQLEA 266

Query: 230 FPIPSENTDFDDIISL-------NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           F    E      + SL       +       A YA  +     +    + E + + +R  
Sbjct: 267 FEAWREERFAWYVNSLGITPSKLHWYKHDKLAHYADLAYDIKFEFPFGIEEIEGIHSR-- 324

Query: 283 EVGHIFYF-GTKYSLPMSATFKGAD-GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI-- 338
                F     +     +  +      + +   +     G  R+  A++  ++    +  
Sbjct: 325 ---TDFDLKQHQEYSGKNMEYIDQTTNERYIPYVVETSAGCDRLFLALLADAYTEDVVDG 381

Query: 339 ------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      VAP K +++ +        +    +   LS     V +DD G  IG ++
Sbjct: 382 EERVVLRLAPRVAPVKAAILPLMKKG-GLGEKAMALCNELSSSYL-VQYDDAG-SIGKRY 438

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              D +G P  + V  + + D  V +++R +  +E ++L  V  + +   
Sbjct: 439 RRQDEIGTPFCITVDHQSLEDESVTVRYRDSAAQERIALSRVQEFLATNL 488


>gi|300951781|ref|ZP_07165596.1| histidyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300958856|ref|ZP_07170964.1| histidyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|300314508|gb|EFJ64292.1| histidyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|300448978|gb|EFK12598.1| histidyl-tRNA synthetase [Escherichia coli MS 116-1]
          Length = 424

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 118/421 (28%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V+ +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVAVVLGESEVANGIAVVKDLRSGEQTAVAQDSVVAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|158333833|ref|YP_001515005.1| histidyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|189082282|sp|B0CDA0|SYH_ACAM1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|158304074|gb|ABW25691.1| histidyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 430

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 65/430 (15%), Positives = 125/430 (29%), Gaps = 19/430 (4%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYD 87
           G I Q S+G    LP        V A  R+  ++    E+  P  +  +L+        D
Sbjct: 2   GFI-QVSRGTRDILPDEVIYWQYVEATARQLLHQAAYRELRTPIFEQTNLFERGIGEATD 60

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             GKEM    DR D+++   P         F  +    +      + I   FR E     
Sbjct: 61  VVGKEMYTFQDRGDRSITLRPEGTAGAVRSFIENKLHAQGGVQRLWYIGPMFRYERPGAG 120

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              +  +  ++   S D   +    +     +  L +       +    AE      +  
Sbjct: 121 RQRQFHQIGVEALGSQDPRADAEVIAIASQLLKSLGVPDWTLSLNSLGTAEDRQKYREAL 180

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             ++      +            P+   ++       +              S  H +++
Sbjct: 181 VTYLSQY-KDDLDPDSQDRLQRNPLRILDSKDPKTKEIAQSAPNILDYLGTDSKQHFDRV 239

Query: 268 FDSLPENKR------VSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
              L +            RG++      F F  +  L   AT     G   Y ++ S   
Sbjct: 240 QQLLTDLDIAYKLNPCLVRGLDYYTHTAFEFELEG-LGNQATV---CGGGRYDRLVSELG 295

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G                 ++    +   +       A           I   L + G  V
Sbjct: 296 GPETPAVGWAIGMERLILLLQNAEITLNQSLDFYCVARGPEAEAQALLICQNLRENGFSV 355

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE---VIN 436
             D  G   G Q   A+  G    +I+G     D  V++K   +G +E ++  +   + +
Sbjct: 356 EMDLSGSAFGKQLKRANRSGALACLILGDTEACDRTVQLKWLASGEQESIAQADLRNLTS 415

Query: 437 YASHRFSNNR 446
               + +  +
Sbjct: 416 QLQSKLTAAK 425


>gi|328952294|ref|YP_004369628.1| Histidyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
 gi|328452618|gb|AEB08447.1| Histidyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
          Length = 422

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/422 (13%), Positives = 118/422 (27%), Gaps = 31/422 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP        +  + R      G  E+ +P L+  +L+  S     D   KEM  
Sbjct: 7   GMKDLLPPETARWHYLETVARAVFVSYGFQEIRLPLLERTELFSRSIGASTDIVEKEMYT 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  ++M   P     +   F  +          ++ +   FR E   +    R R+F
Sbjct: 67  FLDRRGESMTLRPEATASVVRAFIENRLDQGAEVKKYFTMGPMFRYERPQKG---RYRQF 123

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +  +              + +   R     GL+ +               E   L  
Sbjct: 124 HQINCEAIGGEAPELDAELILLLMEIFRRLKVTGLELVVNSLGCPQCRPAYLMELTALFA 183

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNS---IVEQWTAPYAATSDVHNEKLFDSLP 272
            G   + C                    +       V   +         H  ++ + L 
Sbjct: 184 RGLRDL-CPDCQRRSAANPLRVFDCKSKTCQELLAQVPTISDKLCDNCQRHEARVLELLD 242

Query: 273 E------NKRVSARGIEVGH-------IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                        RG++              G + ++     + G         + + G 
Sbjct: 243 RFQVPYRRNPRLVRGLDYYTRTAFEVVTTQLGAQDAVAGGGRYNGLIKDLGGPDLPAIGF 302

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
              +   A + S  D   +  P                 +  RD   ++   L   G   
Sbjct: 303 AIGQERLATLLSQQDADLLQQPLLFVAVLG---------EAARDRAFELVQALRHQGYVA 353

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             D     + +Q  +A+  G    +I+G + ++D +  +K    G +  +SL+ +    +
Sbjct: 354 DLDFTNRSLKAQMTMANRRGAAWVLILGDQELADGRAPLKDMRRGEQHLVSLDTLPQILA 413

Query: 440 HR 441
             
Sbjct: 414 DL 415


>gi|217077192|ref|YP_002334910.1| histidyl-tRNA synthetase [Thermosipho africanus TCF52B]
 gi|226737079|sp|B7IHK5|SYH_THEAB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|217037047|gb|ACJ75569.1| histidyl-tRNA synthetase [Thermosipho africanus TCF52B]
          Length = 418

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/400 (14%), Positives = 114/400 (28%), Gaps = 13/400 (3%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +  +++E     G  E+  P  ++ +L++ S     D   KEM    D+  +++   P  
Sbjct: 22  IENVVKETVRLYGYSEIRTPIFEATELFIRSVGEETDIVQKEMYTFEDKGQRSITLRPEG 81

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
                  F  +      LP   + I   FR E   +    +  +F +        +P   
Sbjct: 82  TAPTIRAFIENSMMATGLPKRLFYIGPMFRYERPQKGRQRQFHQFGV--ELIGSPSPLAD 139

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
             +          +        I                 +    + +    C      +
Sbjct: 140 AEAIIVADRVLKNLGLLNYTIKINSIGCDK--CRANYKNALKEYYSDKLDYVCDDCKRRY 197

Query: 231 PIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDSLPENKRVSA------RGIE 283
                      +         + T         H E+    L   K          RG++
Sbjct: 198 NTNVLRLLDCKVDVEYIKDAPKITDYLCDDCKHHYEETKRLLDNLKIKYVEDPLLVRGLD 257

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
             +   F   +    + +  G  G+   +     G     +  A+               
Sbjct: 258 YYNGVVFEIHHGDLGAQSAVGGGGRYDKLIKELGGSQTPSLGFAMGIERLIIALKNEKIP 317

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           V   K + I +    +  R    KI   L   G  V +  M   + +Q   A  L   L 
Sbjct: 318 VEEIKNNEIFVAHLGEQARIEALKIAEDLRDNGISVVFSTMERGLSAQLKHAARLKCKLC 377

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           VIVG   +  + V +++  TG + ++  + V+  A     
Sbjct: 378 VIVGENELERNIVILRNMETGEQIEIERDYVVGTAKEWIE 417


>gi|313894765|ref|ZP_07828325.1| histidine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976446|gb|EFR41901.1| histidine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 421

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/405 (15%), Positives = 111/405 (27%), Gaps = 15/405 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
             +V  +IR   +R G  E+  P  +  +L+        D   KEM    DR D+++   
Sbjct: 20  WTHVERVIRGLCDRYGYKEIRTPHFEHTELFQRGIGDGTDVVDKEMYTFTDRGDRSLTLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P +       +  H           + I   FR +        R REF      +     
Sbjct: 80  PENTAAAIRAYLEHKFYADGGLQKLFYIGSMFRYDRPQAG---RMREFHQFGVEAVGEES 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT---GETQVFCS 224
                    + + +L      GL  + + A   P       E +        GE    C 
Sbjct: 137 PAVDAEIILLALDFLEELGLEGLT-LKLNAVGCPKCRPAYRERLQAYFKEYLGELCHDCQ 195

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK------RVS 278
             +   P+   +   D      +     T    A    H + +   L             
Sbjct: 196 DRYTRSPLRILDCKADAAQPFMAGAPAITDCLCAECAAHFDAVQSYLTAAGVSYTLDTRL 255

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RG++      F   Y    + +     G+   +     G     V  A           
Sbjct: 256 VRGLDYYTRTAFEIAYPPLGAQSAVAGGGRYDGLVEELGGSPTPAVGFAAGMERVLLALT 315

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                      + + I A       A   +   L + G     D  G  + +Q   A+  
Sbjct: 316 QQNLLPEEPPAADVFIIALGAAAGAAAFPLLHDLRRGGVRALMDYAGRSMKAQMKQANKA 375

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G    VI+G   +      ++      +E + L +++        
Sbjct: 376 GARYAVILGEDELRSGTAALRDMTESAQETIPLADMVQRLISEVK 420


>gi|170767377|ref|ZP_02901830.1| histidyl-tRNA synthetase [Escherichia albertii TW07627]
 gi|170123711|gb|EDS92642.1| histidyl-tRNA synthetase [Escherichia albertii TW07627]
          Length = 424

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/433 (12%), Positives = 115/433 (26%), Gaps = 45/433 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   ++  +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDDESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++                   +  I + A     + A   +  RL           
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAALALAERL----------- 351

Query: 384 MGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             E  G +             FA AD  G  + V++G   V++    +K   +G +  ++
Sbjct: 352 RDELPGVKLMTNHGGGNFRKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVA 411

Query: 431 LEEVINYASHRFS 443
            + V  +     +
Sbjct: 412 QDSVAAHLRTLLA 424


>gi|169335836|ref|ZP_02863029.1| hypothetical protein ANASTE_02262 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258574|gb|EDS72540.1| hypothetical protein ANASTE_02262 [Anaerofustis stercorihominis DSM
           17244]
          Length = 424

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 63/414 (15%), Positives = 118/414 (28%), Gaps = 26/414 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   KA + V   I+E  +     ++ VP  +   L+        D   KEM  L  R 
Sbjct: 15  LPKEVKAWEMVEGKIKEICSAFNYKQIRVPDFEHYALFDRGVGESTDIVSKEMYTLNHRG 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
                  P     +   F  H  +    P   Y I   FR E   +    R R+F     
Sbjct: 75  SDVFALKPEGTSSVIRAFIEHGMTSGITPTKLYYITSCFRSERPQKG---RQRQFHQFGI 131

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD--TGE 218
            +              +  +        GL+             D         +    E
Sbjct: 132 EAIGSYSASMDAEVIMLVDTLFSELKIKGLELRINSVGCPKCRSDYYERLKNFVEPFKNE 191

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISL--------NSIVEQWTAPYAATSDVHNEKLFDS 270
               C       P+   +   +   +L        + + E     + +  +  N    D 
Sbjct: 192 LCEDCQDRLSKNPMRILDCKNEHCKTLLKEAPLMVDYLCEDCKEHFESVKEYLNSAGIDF 251

Query: 271 LPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           + + K V          F       G++ ++     + G             G G     
Sbjct: 252 VVDPKIVRGLDYYTQTAFEFVSTDLGSQGTVCGGGRYNGLVKMIGGSDTPGVGFGLGLER 311

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +I    + +G++         I L  +            K +  L+K G     D M 
Sbjct: 312 LMLI---MEEQGLLNDMEEDGIDIYLAPVGKD---ALKIAFKSFRELTKKGIKSGIDVMD 365

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             + +Q   A+ +      I+G   ++     +++  T  +E++ +E +  Y  
Sbjct: 366 RSLKAQMKYANKVNTKYTAILGEDELNKGVYTVRNMGTKEQEEIKIENLTEYIK 419


>gi|188588876|ref|YP_001920364.1| histidyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|188499157|gb|ACD52293.1| histidyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
          Length = 417

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/402 (14%), Positives = 117/402 (29%), Gaps = 14/402 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+     G  E+  P  +  +L++       D   KEM    D+ ++++   
Sbjct: 22  WHYVENTFRDVVKAYGIREIRTPMFEHTELFLRGVGDTTDIVQKEMYTFNDKGNRSVTLK 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F  +       P   + I   FR E   +    R R+F       F    
Sbjct: 82  PEGTAPAVRAFIENRLFNEAQPTKLFYITPTFRYENVQKG---RLRQFHQCGIEIFGSKE 138

Query: 168 EGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                 +      +  ++  +     I       P      +E +        +  C   
Sbjct: 139 PTMDVEAIKVAMDTLSKLGLKSLSLHINNLGC--PTCRAKYNEALKKFLEENYENLCDTC 196

Query: 227 ---FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARG 281
              F   P+   +        +     Q         + H  K+ + L   E   +  +G
Sbjct: 197 KSRFEKNPMRILDCKERKCHEITKNAPQILDYVCEECETHFNKVKEYLDVLEIPYIVDQG 256

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           I  G  +Y  T + +          G+   +     G     V  A+ E           
Sbjct: 257 IVRGLDYYTKTIFEIINDDFTVCGGGRYDKLVEELGGPEMPAVGFAIGEERIIMTLENEG 316

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +    +  + I A     +    K+   L  +G     + MG  I ++   A+ +G  
Sbjct: 317 IEIPNENMVDLYIGARGDAEKKYAFKLAHDLRSLGIKCEINHMGRSIKAEMKYANKIGSK 376

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              I+G   + ++++ +K    G    +SL+  I        
Sbjct: 377 FTTILGEDELENNRINLKRMEDGEIFTLSLDS-IEEIQKIVK 417


>gi|156932943|ref|YP_001436859.1| histidyl-tRNA synthetase [Cronobacter sakazakii ATCC BAA-894]
 gi|156531197|gb|ABU76023.1| hypothetical protein ESA_00746 [Cronobacter sakazakii ATCC BAA-894]
          Length = 414

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/420 (12%), Positives = 120/420 (28%), Gaps = 27/420 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLAD 98
            +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM    D
Sbjct: 3   DYLPGDTAIWQRIEGTLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFED 62

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRSREF 155
           RN  ++   P            H   Y      +Y     + +   + R R       E 
Sbjct: 63  RNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGAEV 122

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                   D         + +       +   L         ++     D    F+    
Sbjct: 123 FGLQGPDIDAELIMLTARWWRALGIAEHVSLELNS---IGSLDARANYRDALIAFLEQH- 178

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN- 274
             +    C +     P+   ++   D+ +L +            S  H   L   L +  
Sbjct: 179 VDKLDEDCKRRMYSNPLRVLDSKNPDVQALLNDAPMLGDYLDEESREHFAGLCAFLDDAG 238

Query: 275 -----KRVSARGIEV--GHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                 +   RG++     +F       G++ ++     + G   +       + G    
Sbjct: 239 IAYTVNQRLVRGLDYYNRTVFEWVTTSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMG 298

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++          +          + +            E++   L        + 
Sbjct: 299 LERLVLLVQ---AVNPEFTADPVVDIYLIASGNGAQSAAMQLAERVRDALPGCKLMTNY- 354

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             G     QFA AD  G  + +++G   V++ +V +K   +G ++ ++  E+  +     
Sbjct: 355 -GGGNFKKQFARADKWGARIALVLGEDEVANRQVVVKDLRSGEQQALAQSELAAHLQTLL 413


>gi|329725453|gb|EGG61936.1| putative glycine--tRNA ligase [Staphylococcus epidermidis VCU144]
          Length = 310

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 90/267 (33%), Gaps = 20/267 (7%)

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           R  +        +          F    +  E Q +      ++    +    +D + L 
Sbjct: 53  RNEITPGNFIFRTREFEQMELEFFCKPGEEIEWQNYWKTFASEWLT--DLNISEDNMRLR 110

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
              E   + Y+  +     K      E   +++R           +++S           
Sbjct: 111 DHDEDELSHYSNATTDIEYKFPFGWGELWGIASRTDYDLRQH---SEHSGEDFKYHDPET 167

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHD----------GKGIIWPDSVAPFKISLINIKA 356
            + +        +GA RV  A +  ++              + +  ++AP+K +++ +  
Sbjct: 168 NEKYIPYCIEPSLGADRVTLAFLCDAYAEEGVEGSKDARTVMHFHPALAPYKAAVLPLSK 227

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     KI+ +LS     + +D+  + IG ++   D +G P  +      + D++V
Sbjct: 228 K---LSSEAIKIFEQLSSS-FAIDFDES-QSIGKRYRRQDEIGTPYCITFDFDSLEDNQV 282

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R +  +  M + E+  + + +  
Sbjct: 283 TVRDRDSMEQVRMPISELETFLAEKVK 309


>gi|269792195|ref|YP_003317099.1| histidyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099830|gb|ACZ18817.1| histidyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 423

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 67/420 (15%), Positives = 119/420 (28%), Gaps = 44/420 (10%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V ++ R   +  G  E+ +P  +  +L+        D   KEM    DR  +++   
Sbjct: 21  WAYVMSVFRGVADDFGYREVHLPIFEHTELFCRGIGDTTDVVEKEMYTFTDRGGRSITLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDLT 166
           P     M   +  H    +  P   + +   FR E   +    R R+F   D        
Sbjct: 81  PELTASMVRAYLEHDLRNQQQPVKLWSVGPMFRYERPQKG---RYRQFWQVDVEALGSQD 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHEFIVLADTGETQ 220
           P             Y     RLGL ++ +   S       P+      +F+     G  +
Sbjct: 138 PMVDLEVIGFSLELY----RRLGLSNLEVVLNSVGCPKCRPVHRKALTDFLGAKLDGLCE 193

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN-------------EKL 267
             C   F   P+   +    D  +L       T         H               KL
Sbjct: 194 T-CRGRFHRNPLRILDCKNPDCKALTEDAPAMTDHLCDECRDHFHALLKGLDAAGAVVKL 252

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF--KGADGKDHYVQMGSYGIGAMRVV 325
              L        +          G + ++     +          +V    +  G  R+V
Sbjct: 253 DKRLVRGLDYYTKTAYEILSGDLGAQNAVCGGGRYDHLAEAIGGPFVPGVGFASGVERIV 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +             D+        +N        R A   +   L  +G     D  G
Sbjct: 313 ITMESQGCSFGQEPSIDAFVVTASPEMN-------VRLAASALLKGLRALGVRSDMDYSG 365

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +   +Q  +A     P   I+G + +  S V +K   +G +  + L +     S   +  
Sbjct: 366 KSFKAQMKLASQRNAPWVCIIGDEELLRSVVTLKDMGSGEQTQVPLGD-----SAEIAKR 420


>gi|238018958|ref|ZP_04599384.1| hypothetical protein VEIDISOL_00818 [Veillonella dispar ATCC 17748]
 gi|237864442|gb|EEP65732.1| hypothetical protein VEIDISOL_00818 [Veillonella dispar ATCC 17748]
          Length = 423

 Score = 98.3 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 64/419 (15%), Positives = 119/419 (28%), Gaps = 23/419 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLA- 97
            +LP        +   +RE     G  E+  P  +   L++       D   KEM     
Sbjct: 11  DFLPEQMINWHYIEQRMREICKVYGFNEIRTPAFEDTKLFLRGIGETTDVVQKEMYTFTT 70

Query: 98  -DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D    +    P +       +  +    +     +Y +   FR +        R R+F 
Sbjct: 71  GDDGGSSFTLRPENTASAVRAYLENKVYGKEGLTKWYYMGPMFRHDKPQAG---RYRQFH 127

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHEF 210
              A                M V  L      GLK + +   S       P+  +   EF
Sbjct: 128 QFGAEVLGSQSPVVDSEVICMVVQLL---KDFGLKDLNVEVNSVGCPTCRPVYREKLIEF 184

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                  +    C +     P+   +   +   SL+    +           H E+L   
Sbjct: 185 FEPK-KEQLCSDCQERLYKNPLRILDCKNETCKSLSVGAPEIHEHLCEECHDHFEELKTY 243

Query: 271 LPENKRVSA------RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           L              RG++      F  +Y+   + +     G+   +     G     +
Sbjct: 244 LTAANVQYTLNPRLVRGLDYYTKTAFEVQYTPLGAQSAVAGGGRYDGLVEELDGPHTPAI 303

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             A+                 P       + A   V +    KI   L      V  D  
Sbjct: 304 GFAMGMERLLLALEKQNLLPEPTVEPSAFVVALGDVAKVEAFKICQALHDAYVTVEMDGQ 363

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G+ + +Q   A+ +     +I+G   ++  +  I+   T  +E + L+ V    +    
Sbjct: 364 GKSMKAQLKYANKINAKYVIILGDDELARGEAIIRFMETSEQETVPLDTVSERITSLVK 422


>gi|218706017|ref|YP_002413536.1| histidyl-tRNA synthetase [Escherichia coli UMN026]
 gi|293405955|ref|ZP_06649947.1| histidyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|298381756|ref|ZP_06991355.1| histidyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|300898382|ref|ZP_07116725.1| histidyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|226737073|sp|B7N6A2|SYH_ECOLU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|218433114|emb|CAR14011.1| histidyl tRNA synthetase [Escherichia coli UMN026]
 gi|291428163|gb|EFF01190.1| histidyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|298279198|gb|EFI20712.1| histidyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|300357922|gb|EFJ73792.1| histidyl-tRNA synthetase [Escherichia coli MS 198-1]
          Length = 424

 Score = 98.3 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 116/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D   L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPVLGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|220903295|ref|YP_002478607.1| histidyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867594|gb|ACL47929.1| histidyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 416

 Score = 98.3 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/417 (13%), Positives = 118/417 (28%), Gaps = 27/417 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G     P        +    R+   R G +E+  P ++  +L+  S     D   KEM  
Sbjct: 8   GFADMFPPDSDIFTRMENTARDIFGRYGFVELRTPIVEFTELFQRSIGEETDVVQKEMYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR D+++   P     +   +     + R      +     FR E   +    R R+F
Sbjct: 68  FPDRKDRSLTLRPEATAGVMRAYIESGLANREAVSRLFTTGPMFRYERPQKG---RMRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHE 209
              +          +      +    LR    LGL+ + ++  S       P   D    
Sbjct: 125 HQINCECLGSHSPYADAD---LISMLLRFLDALGLEDLTLKVNSLGCSQCRPKFKDALLA 181

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           ++   D+      C++     P+   +       ++     +           H + +  
Sbjct: 182 YLETVDSAALCADCARRVHTNPLRVLDCKQPGCRAITDAAPKLLDYNCPECRAHFDTVLG 241

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAV 328
            L   K       E+ H    G  Y    +               G     G +R +   
Sbjct: 242 LLNGEKLPF----ELDHRLVRGLDYYCRTTFEVVSGSIGAQAAVAGGGRYDGLIRSLGGP 297

Query: 329 IESSHDGKGIIWPDSVAPFKISLIN----IKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
                     +   ++     + +     +   D   R     +   L   G     +  
Sbjct: 298 DAPGVGFAAGMERLALMMGAGAAVPADFYLVGMDAQSRAQGYALAQNLRAAGLRGEMNFS 357

Query: 385 GEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
               G +     A   G    +I+G    + + V +K+  +G +  +   + ++   
Sbjct: 358 E--AGFKSLMRQAGKSGARYCLIMGPDEAAQNTVVVKNLESGEQTTVPQAQALHILQ 412


>gi|325958379|ref|YP_004289845.1| ATP phosphoribosyltransferase regulatory subunit [Methanobacterium
           sp. AL-21]
 gi|325329811|gb|ADZ08873.1| ATP phosphoribosyltransferase regulatory subunit [Methanobacterium
           sp. AL-21]
          Length = 429

 Score = 98.3 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 61/415 (14%), Positives = 123/415 (29%), Gaps = 28/415 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMIYGP 108
             NV   ++      G  E+  P  +   L+  +SG  +    ++    D++ + +   P
Sbjct: 20  RKNVENTMKRIFESYGYGEIKTPIFEELSLFTTKSG--EGIKDQIYHFQDKSGRDLALRP 77

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDLTP 167
                +  ++   ++     P   Y     FR E        R R+F           +P
Sbjct: 78  ELTAPVARMYIKELQKAPK-PVKMYYFGSCFRYERPQAG---RFRQFWQLGCELIGGKSP 133

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSI------PMRAESGPIGGDLSHEFIVLADTG---E 218
                  +        +        I              I GD   + +   D G   E
Sbjct: 134 GSEAEVISMAAHCLDELGLENYEIHIGNLGILRNILIDAQILGDTQDQVMAAIDKGDAEE 193

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            +        D           D+    SI++   A    + +  N             +
Sbjct: 194 LKNLLKSINTDEDSEELLLKLIDMKGDASILKDAEALINCSENACNALFELEKLLEALEA 253

Query: 279 AR--------GIEVGHIFYFGTKYSLPMS---ATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                     GI  G  +Y GT + + +    A  + + G  + +     G        A
Sbjct: 254 FGFSNYTVNLGIARGLDYYTGTVFEIYVHGLGAQKQISGGGTYNLIELFGGEKVESTGFA 313

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                          ++   +   + +   +        +I  +L K       D +G++
Sbjct: 314 FGFDRVMEALKKQQTTIDKEEAVKVFVAPLNSDLSLTGYEIVQKLRKANIGAEVDLVGKK 373

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +    + AD       V++GS+   + KV +K   TG +E +++ EV +Y     
Sbjct: 374 LKKILSYADTKQISYVVLLGSREFEEGKVTVKDMNTGEQESVNISEVESYFKTML 428


>gi|254425393|ref|ZP_05039111.1| histidyl-tRNA synthetase [Synechococcus sp. PCC 7335]
 gi|196192882|gb|EDX87846.1| histidyl-tRNA synthetase [Synechococcus sp. PCC 7335]
          Length = 431

 Score = 98.3 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 60/418 (14%), Positives = 122/418 (29%), Gaps = 31/418 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIY 106
               +  I R+  +++   E+  P  + ++L+        D+ GKEM    DR  +++  
Sbjct: 20  LWVVIEGIARQVLSQSAYREIRTPIFEMSELFARGIGEATDAVGKEMYSFEDRGGRSIAL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +   F  +    +      + +   FR E        R R+F   D       
Sbjct: 80  RPEITAGLVRAFIQNKLFAQGGVQRLWHLGPAFRYERPQAG---RQRQFHQLDVEILGSR 136

Query: 167 PEGSKHSYNKMFVSYLRI---------------FHRLGLKSIPMRAESGPIGGDLSHEFI 211
              +      +    L                           + A   P   +L  +  
Sbjct: 137 DARADVEIIAIATQILNTLGLKALSLDLNSVGSGEDRRNYRDALVAYFTPYKLELDTDSR 196

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              D    ++  SKD     I ++     D +S +S           T+   +  +   L
Sbjct: 197 DRLDRNPLRILDSKDKRTQEIVTDAPSLLDFLSDDSRRHFDAVQQHLTNIGIDFTINPRL 256

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                              G + ++     + G   +       + G G       ++  
Sbjct: 257 VRGLDYYTHTAFEIQSSDLGAQATVCGGGRYDGLVAQLGGPDTPAIGFGMGMERLVILLE 316

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                       +              ++      K+  +L + G  V  D  G   G Q
Sbjct: 317 QMGQYTTEPLLDIYLISR-----GKKAELQ---SVKLAHQLRQNGYSVEVDLSGSAFGKQ 368

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI---NYASHRFSNNR 446
           F  AD  G  L +I+G   V   KV++K   +  + +++  E++   +    + +  R
Sbjct: 369 FKRADRSGAVLGLILGDAEVDAQKVQLKWLGSNEQSELTQAELVKKMDEIKSKIAAVR 426


>gi|283477573|emb|CAY73489.1| hisS [Erwinia pyrifoliae DSM 12163]
          Length = 441

 Score = 98.3 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/426 (14%), Positives = 131/426 (30%), Gaps = 31/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        V  I+++  +  G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 26  GMNDYLPAETAVWQRVEQILKQVLSSYGFSEIRMPIVEQTPLFKRAIGEVTDVVEKEMYT 85

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 86  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRYERPQKG---RYRQF 141

Query: 156 LMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
               A  F    P+            +  +     ++       S     +  H  +   
Sbjct: 142 HQIGAEVFGLQGPDIDAELIMMTARWWKALGIADHVRLELNSIGSLEARANYRHALVAFL 201

Query: 215 DTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +     +   C +     P+   ++   DI +L +            S  H   L   L 
Sbjct: 202 EQHVEVLDEDCKRRMYSNPLRMLDSKNPDIQALLNDAPTLGDYLDDESREHFAGLCRQLD 261

Query: 273 ------ENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                    +   RG++     +F       G + ++     + G   +       + G 
Sbjct: 262 AAGIAYRVNQRLVRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVEQLGGRATPAVGF 321

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GC 377
                   ++                P ++  + + A  Q  + A   +  +L       
Sbjct: 322 AMGLERLVLLV-------QAVNPEFEPTRVVDVYVIASGQGVQSAALLLAEQLRDALPEL 374

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +  +  G     QFA AD  G  + +++G   V++ ++  K    G ++ ++  +    
Sbjct: 375 KLMSNFGGGNFKKQFARADKWGARIALVLGEDEVANGQLVFKDLRNGEQQTLAQRDAATT 434

Query: 438 ASHRFS 443
            +    
Sbjct: 435 LAALLQ 440


>gi|259907719|ref|YP_002648075.1| histidyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|224963341|emb|CAX54826.1| Histidyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
          Length = 425

 Score = 98.3 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/426 (14%), Positives = 131/426 (30%), Gaps = 31/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        V  I+++  +  G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPAETAVWQRVEQILKQVLSSYGFSEIRMPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
               A  F    P+            +  +     ++       S     +  H  +   
Sbjct: 126 HQIGAEVFGLQGPDIDAELIMMTARWWKALGIADHVRLELNSIGSLEARANYRHALVAFL 185

Query: 215 DTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +     +   C +     P+   ++   DI +L +            S  H   L   L 
Sbjct: 186 EQHVEVLDEDCKRRMYSNPLRMLDSKNPDIQALLNDAPTLGDYLDDESREHFAGLCRQLD 245

Query: 273 ------ENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                    +   RG++     +F       G + ++     + G   +       + G 
Sbjct: 246 AAGIAYRVNQRLVRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVEQLGGRATPAVGF 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GC 377
                   ++                P ++  + + A  Q  + A   +  +L       
Sbjct: 306 AMGLERLVLLV-------QAVNPEFEPTRVVDVYVIASGQGVQSAALLLAEQLRDALPEL 358

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +  +  G     QFA AD  G  + +++G   V++ ++  K    G ++ ++  +    
Sbjct: 359 KLMSNFGGGNFKKQFARADKWGARIALVLGEDEVANGQLVFKDLRNGEQQTLAQRDAATT 418

Query: 438 ASHRFS 443
            +    
Sbjct: 419 LAALLQ 424


>gi|13358056|ref|NP_078330.1| glycyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762234|ref|YP_001752577.1| glycyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|11387150|sp|Q9PPZ7|SYG_UREPA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|189082281|sp|B1AJD3|SYG_UREP2 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|11271564|pir||D82884 glycyl-tRNA synthetase UU493 [imported] - Ureaplasma urealyticum
 gi|6899491|gb|AAF30905.1|AE002147_6 glycyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827811|gb|ACA33073.1| glycyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
          Length = 473

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/436 (11%), Positives = 131/436 (30%), Gaps = 42/436 (9%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG    +N+  +  +E    +   + +    + +  +W  SG  D++   ++   
Sbjct: 35  WDYGPLGVLLKNNLKNLWWKEFVTKQKNIVGLDSAIILNPLVWKASGHLDNFSDPLIDCK 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
                        E    DI  +   +           ++      +  +  +R    + 
Sbjct: 95  SC-KTRYRADKLIESFNKDIHIAENSTNEEFMKVLNDHKIFCPTCKQFNWTDIRHFNLMF 153

Query: 158 KDAYSFDLTPEG---------------SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           K        P+                 K+    M +       ++G            I
Sbjct: 154 KTHQGVIEDPKNIVYLRPETAQGIFVNFKNVQRSMRLHLPFGIAQIGKSFRNEITPGNFI 213

Query: 203 GGDLSHEFIV--LADTGETQVFCSKDFMDFPIPSENTDFD---DIISLNSIVEQWTAPYA 257
                 E +        E        +++       T      + +  +   ++  + Y+
Sbjct: 214 FRTREFEQMEIEFFLKEEIAYDVFDKYLNQIQNWLVTCCGLDLNNLRKHEHPKEELSHYS 273

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             +            E   ++ R      +       S      F     + +   +   
Sbjct: 274 KKTIDFEYNFLHGFSELYGIAYRTNYDLSVH---MNLSKKDLTYFDEETKQKYIPHVIEP 330

Query: 318 GIGAMRVVAAVIE---------SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            +G  R++ A++          +  D   +     +AP+KI+++ +       ++  E +
Sbjct: 331 SVGVERLLYAILTEATFIEKLANDEDRILMNLKYDLAPYKIAVMPLVNK---LKEKAEAV 387

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK---FVSDSKVEIKHRLTGI 425
           Y ++  +   V +D+ G  IG ++   D +G    + +         D    I+ R T  
Sbjct: 388 YNKILDLNISVTFDNSG-SIGKRYRRQDAIGTIYCITIDYDSFGDEHDPTFTIRERNTMA 446

Query: 426 REDMSLEEVINYASHR 441
           ++ + L E+  Y S +
Sbjct: 447 QKRIKLSELSLYLSQK 462


>gi|323156168|gb|EFZ42327.1| histidyl-tRNA synthetase [Escherichia coli EPECa14]
          Length = 424

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 117/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTLLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|157363624|ref|YP_001470391.1| histidyl-tRNA synthetase [Thermotoga lettingae TMO]
 gi|166980050|sp|A8F593|SYH_THELT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|157314228|gb|ABV33327.1| histidyl-tRNA synthetase [Thermotoga lettingae TMO]
          Length = 433

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 59/389 (15%), Positives = 114/389 (29%), Gaps = 13/389 (3%)

Query: 64  TGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G  E+  P  +  +L+  S G+  D   KEM    D+  +++   P         F  +
Sbjct: 34  FGYKEIRTPVFEQTELFARSVGQETDIVQKEMYTFTDKGGRSITLRPEGTAPTIRAFLEN 93

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                 LP  FY +   FR E      + +  +F           P     +     +  
Sbjct: 94  SMINLGLPQRFYYLGPMFRYERPQAGRLRQFHQF--GIELIGSADPAADVETIQLAKMFL 151

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +  +     I               E +           C      F           
Sbjct: 152 DSLELKKYKIYINSIGCQE--CRRAYKEALRSYYEHHYDHICDDCKRRFETNIMRLLDCK 209

Query: 242 I-ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA------RGIEVGHIFYFGTKY 294
           + I++     + +         H E +   L + +          RG++      F  K+
Sbjct: 210 VDINVAKQAPKISDYLCDHCRDHYESIKQMLTDLRVYFHEDSSLVRGLDYYTRTVFEIKH 269

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
               + +   A G+   +     G     +  A                +       + I
Sbjct: 270 ESLGAQSTILAGGRYDGLCKELGGHDIPSLGFASGIERLILAVKAEEIEIPKPPYCDVYI 329

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            +  +  R    +I   L      V  D     + +Q   AD LG  L +I+G   ++ S
Sbjct: 330 ASIGKQARVKAFQIAQGLRLCKIPVISDVNSRSLKAQLKHADKLGAILAIIIGENELAQS 389

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V++K+ LT  + ++  + V++Y      
Sbjct: 390 TVQVKNLLTETQSEVEFDYVVDYVLDLLK 418


>gi|2896164|gb|AAC03121.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 424

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/436 (13%), Positives = 115/436 (26%), Gaps = 53/436 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            E         D         + +       +   L         E+     D    F+ 
Sbjct: 130 AEVFGLQGPDIDAELIMLTARWWRALGIAEHVSLELNS---IGSLEARANYRDALVAFLE 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD--- 269
                  +  C +     P+   ++   D+ +L +            S  H   L     
Sbjct: 187 QHQETLDED-CKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHFAGLCKLLD 245

Query: 270 ----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                      L        R +        G++ ++     + G   +       + G 
Sbjct: 246 AAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGF 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                   ++                   +  I + A     + A   +  RL       
Sbjct: 306 AMGLERLVLLV-------QAVNPEFIASPVVDIYLVAAGAQTQSAAMTLAERL------- 351

Query: 380 FWDDMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
                 E  G +             FA AD  G  + +++G   V+D  V +K   +G +
Sbjct: 352 ----RDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQ 407

Query: 427 EDMSLEEVINYASHRF 442
             ++ + V  +     
Sbjct: 408 TAVAQDSVAAHLRTYL 423


>gi|54309341|ref|YP_130361.1| putative threonyl-tRNA synthetase [Photobacterium profundum SS9]
 gi|46913777|emb|CAG20559.1| putative threonyl-tRNA synthetase [Photobacterium profundum SS9]
          Length = 325

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 2   RRSKYFLPILQEN-PRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
           +  K  L  L+E   RD       L L    +   S G+  W   G      +   IRE+
Sbjct: 227 KLLKAHLTRLEEASKRDHRTIGEHLDLF--HMQHESPGMVFWHHNGWTIFRELQLFIREK 284

Query: 61  QNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             +    E+  P +    LW  S  +D Y   M  
Sbjct: 285 LTKYEYQEVKGPLMMDRVLWERSSHWDKYAHAMFT 319


>gi|310821476|ref|YP_003953834.1| histidyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309394548|gb|ADO72007.1| Histidyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 435

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 72/430 (16%), Positives = 125/430 (29%), Gaps = 26/430 (6%)

Query: 31  MIHQHS--KGIYSWLP--LGQKA-----LDNVNAIIREEQNRTGAIEMSVPTLQSADLWV 81
           M  + S  KG+   LP  LG +         V    RE  +R G  E+  P ++   L+V
Sbjct: 1   MSQKLSGVKGMNDLLPGELGGEMAPIETWQYVERTARELFSRFGYGEIRTPMVEDTALFV 60

Query: 82  ES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
            S     D  GKEM    D+  +++   P         +  H  +       +Y +   F
Sbjct: 61  RSVGEETDIVGKEMYTFEDKAQRSLSLRPEGTAPAARAYIEHSVANLEPVTRWYYMGPMF 120

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSK----HSYNKMFVSYLRIFHRLGLKSIPM 195
           R E        R R+F    A ++                ++  +       L L S+  
Sbjct: 121 RYERMKTG---RYRQFFQIGAEAYGSREAAQDVELMDMVVQLLEALGLKEISLNLNSLGD 177

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            A        L        D       C +     P+   +   +   ++          
Sbjct: 178 EACRPAFQKKLVEHLTAHRDA--LCADCQRRLEHNPMRVLDCKNEKCQAVARGSPDILQF 235

Query: 256 YAATSDVHNEKLFDSLPENKRV------SARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
                  H   +   L   K          RG++      F    S P   T     G  
Sbjct: 236 LCEPCQAHFADVRRKLDALKVRYVINPRMVRGLDYYTRTAFEFIASHPALGTASTVGGGG 295

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
            Y ++     G                 ++            + I   D+  +D    + 
Sbjct: 296 RYDKLVKSLGGPDVPAVGFGLGLDRLTLLLREGGQRYSAPPDVFIAVADEGSQDEAFTLA 355

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           +RL + G  V +D  G  + SQ   AD       +++G       + ++K    G    +
Sbjct: 356 SRLRREGLKVEFDTRGGSLKSQMKRADKTRARFALVLGEAERQAGRAQLKPMAGGEPLSV 415

Query: 430 SLEEVINYAS 439
           +L E+     
Sbjct: 416 ALGEIAQAVR 425


>gi|52549236|gb|AAU83085.1| glycyl-tRNA synthetase [uncultured archaeon GZfos26E7]
          Length = 593

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/417 (15%), Positives = 127/417 (30%), Gaps = 79/417 (18%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  D           LPF   QI   +R+E+ PR GV+R REF   +A  F
Sbjct: 168 YLRPETAQGMFVDFEHLFRFYREKLPFGVTQIGKAYRNEISPRQGVIRLREFTQAEAEIF 227

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-----------HEFIV 212
               + +   ++ +  + LR +     +      E      +L+           HEF+ 
Sbjct: 228 INPTDKNHPRFSMIEDTVLRYYPASHQRVSHPAYEDDGGIIELTTRDAVDRAIVAHEFLA 287

Query: 213 LA---------------------------------DTGETQVFCSKDFM----------- 228
                                              D  + +V   +              
Sbjct: 288 YHLVLTHLFLVRVGIDPARLRFRQHQPDEMAHYAVDCWDAEVLTDRFGWVEIIGIADRSD 347

Query: 229 -DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV------------HNEKLFDSLPENK 275
            D    +E++  D  + +   + +         D+                    L E  
Sbjct: 348 YDLSSHAEHSKKDLSVLIEYDIPKQVERIVVKPDMSVIGPLYKGKAGKVRAALIGLGEED 407

Query: 276 RV-SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH- 333
                  IE+        +  +      +   G+     +     G  R++ A +E S  
Sbjct: 408 LTGDEIKIEIDGEIVLIPRDMVKCETVIEDVRGERVIPHVIEPSFGIDRIIYAALEHSFS 467

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                      +  P  VAP +++++ +   +++       I   L + G  V +DD G 
Sbjct: 468 EEPVEGETRNVLHLPAEVAPVQVAVLPLLTREELITP-SLAIVKTLRENGVFVSYDDSG- 525

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            IG ++   D +G P  + +  + + D  V I+ R +  +  + + E+         
Sbjct: 526 TIGRRYRRNDEIGTPFSITIDYETLDDDTVTIRDRDSMAQIRVPVGELAETIRAMIR 582



 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G Y + PLG      +  I R+      G  E+  PT+  A ++  SG    +   M+ 
Sbjct: 37  AGFYDYGPLGAMLKRRIEDIWRKMYVIEEGFYEIETPTIGIAAIFDASGHTRGFSDPMVV 96

Query: 96  LADRNDKAMIYGPTHEEV 113
            +   D A       E +
Sbjct: 97  CSGC-DHAFRADHLIEGI 113


>gi|313139724|ref|ZP_07801917.1| glycyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132234|gb|EFR49851.1| glycyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
          Length = 365

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 94/256 (36%), Gaps = 20/256 (7%)

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           +  EF V+  T E       D           + +++       E+ +     T D+  +
Sbjct: 72  MEMEFFVVPGTDEEWHQYWIDTRTRWYTDLGINPENLRHYEHPKEKLSHYSKRTVDIEYK 131

Query: 266 KLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             F      E + ++ R           +K+S    + F  A G+     +     G  R
Sbjct: 132 FGFQGSDWGELEGIANRTDYDLSAH---SKHSGEDLSYFNQATGEKFVPYVIEPAAGLTR 188

Query: 324 VVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + A +  ++D                      +AP K +++ +    ++       + A
Sbjct: 189 SLMAFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQS-IAHDLAA 247

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L +    + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +E ++
Sbjct: 248 DLRQHEWMIDYDEAGA-IGRRYRREDEIGTPLCITVDFDTIDDQAVTIRERDTMQQERVA 306

Query: 431 LEEVINYASHRFSNNR 446
           L++V +Y + R S  R
Sbjct: 307 LDKVADYVAARVSEKR 322


>gi|269798268|ref|YP_003312168.1| histidyl-tRNA synthetase [Veillonella parvula DSM 2008]
 gi|269094897|gb|ACZ24888.1| histidyl-tRNA synthetase [Veillonella parvula DSM 2008]
          Length = 423

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 61/415 (14%), Positives = 117/415 (28%), Gaps = 15/415 (3%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLA- 97
            +LP        +   +RE     G  E+  P  +   L++       D   KEM     
Sbjct: 11  DFLPEQMINWHYIEQRMREICKVYGFNEIRTPAFEETKLFLRGIGETTDVVQKEMYTFTT 70

Query: 98  -DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D    +    P +       +  +    +     +Y +   FR +        R R+F 
Sbjct: 71  GDDGGSSFTLRPENTASAVRAYLENKVYGKEGLTKWYYMGPMFRHDKPQAG---RYRQFH 127

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
              A                M V  L+ F    L                  + I   + 
Sbjct: 128 QFGAEVLGSQSPVVDSEVICMVVQLLKDFGLKDLNVEVNSVGCPTCRPVYREKLIAFFEP 187

Query: 217 GETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            + Q+   C +     P+   +   +   SL+    +           H E+L   L   
Sbjct: 188 KKEQLCSDCQERLYKNPLRILDCKNETCKSLSIGAPEIHEHLCEECHDHFEELKTYLTAA 247

Query: 275 KRVSA------RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      RG++      F  +Y+   + +     G+   +     G     +  A+
Sbjct: 248 NVQYTLNPRLVRGLDYYTKTAFEVQYTPLGAQSAVAGGGRYDGLVEELDGPHTPAIGFAM 307

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                            P       + A     +    KI  +L  +   V  D  G+ +
Sbjct: 308 GMERLLLALEKQNLLPEPTVEPSAFVVALGDAAKVEAFKICQKLRSLDIPVEMDGQGKSM 367

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +Q   A+ +     +I+G   +   +  I+   T  +E +SL+ V    +    
Sbjct: 368 KAQLKYANKINAKYVIILGDDELVRKEAIIRFMDTSEQETVSLDTVAERITSLVK 422


>gi|238895969|ref|YP_002920705.1| histidyl-tRNA synthetase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548287|dbj|BAH64638.1| histidyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 424

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/421 (12%), Positives = 117/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETALWQRIEGSLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYVGPMFRHERPQKGRYRQFHQIG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +       
Sbjct: 130 AEVFGLQGPDIDAELIMLTARWWRELGISEHVSLELNSIGSLEARANYRDALVAYLEQFT 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA------TSDVH 263
             +  D+           +D   P      +D  +L   +++ +  + A           
Sbjct: 190 DKLDEDSKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDEESKAHFAGLCALLDDAGI 249

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L        R +        G++ ++     + G   +         G     
Sbjct: 250 RYTVNQRLVRGLDYYNRTVFEWVTTSLGSQGTVCAGGRYDGLVEQLGGRATPGVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A  ++  ++     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGTDTQSAAMRLAEQVRDALPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + ++VG   ++D  V +K   +G +  ++ E V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVALVVGESEIADGNVVVKDLRSGEQTTVTQESVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|124485976|ref|YP_001030592.1| glycyl-tRNA synthetase [Methanocorpusculum labreanum Z]
 gi|124363517|gb|ABN07325.1| glycyl-tRNA synthetase [Methanocorpusculum labreanum Z]
          Length = 576

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 75/494 (15%), Positives = 152/494 (30%), Gaps = 95/494 (19%)

Query: 27  LRTGMIHQHSKGIYSWLPLGQKALDNVNA-IIREEQNRTGAIEMSVPTLQSADLWVESGR 85
           LR   + + + GI      G  + + +   ++ +E    G                  G 
Sbjct: 99  LRADHVAE-AFGIPH---AGTMSKEELQNVLVDKECPACG---------------KVLGE 139

Query: 86  YDSYGKEMLRLADR----NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            + +   ++           K  +   T + +  D  R       +LPF   Q+   +R+
Sbjct: 140 VEVFDFNLMFTTSIGPGGQRKGYLRPETAQGMFVDFPRLLRFYRDHLPFGAVQVGKSYRN 199

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH--------------- 186
           E+ PR G++R REF   +A  F    E    ++++     + ++                
Sbjct: 200 EISPRQGMIRLREFTQAEAEIFVHPEEKDHPNFSRYADYKMPLWGIAQQEKETPAVVKSM 259

Query: 187 ----RLGLKSIPMRAESGPIGGDLSHEFIVLADT-------GETQVFCSKDFMDFPIPSE 235
                 G+ +    A    +  D+        D         + +   + D  D    S+
Sbjct: 260 REAVDEGIIANEYVAYYVAMTHDILCTVGFNPDKIRFRQHMPDERAHYATDCWDAEALSD 319

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV-----GHIFYF 290
              + +I+ +    +     ++  S   N  +F   PE K+V  + I       G  F  
Sbjct: 320 RFGWVEIVGIADRTDYDLKAHSRVSGQKN-TVFVQYPEAKKVHHKAIVPNFGKLGPAFKG 378

Query: 291 GTKYSLPMSAT-----------------------------FKGADGKDHYVQMGSYGIGA 321
             K       T                                  G+D    +     G 
Sbjct: 379 KAKPISEQMLTATPEADGIHLTIDGEEILVGPEMYTVKDEIVDVFGEDVMPHVIEPSYGI 438

Query: 322 MRVVAAVIESSHDGKG--------IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            R+   V+E ++            + +   VAP +++++ + A D    +  + +   L 
Sbjct: 439 DRMCYMVLEHAYAEDVADGEARTVMRFKKGVAPIQVAVLPLMARD-GLDEIAKNLVLELQ 497

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G    +DD G  IG ++   D +G P  + V      D+ V ++ R +  +       
Sbjct: 498 NEGIQTEYDDAGA-IGRRYRRQDEIGTPYCITVDYDTKDDASVTLRDRDSMQQIRGPAAA 556

Query: 434 VINYASHRFSNNRP 447
           V+           P
Sbjct: 557 VLKALPDLLKGKLP 570



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 24  KLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQS 76
           +L  R G +   S       G   + PLG      + A  R     + G  E+  PT+  
Sbjct: 13  ELARRRGFVWPSSEIYGSVAGFIDYGPLGAMLKRRIEATWRRFYVVQEGYYEIECPTVGI 72

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDK 102
             ++V SG    +  +M +     + 
Sbjct: 73  EPIYVASGHVGGFSDKMFQCPHCQEF 98


>gi|310764773|gb|ADP09723.1| hypothetical protein EJP617_00420 [Erwinia sp. Ejp617]
          Length = 441

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/426 (14%), Positives = 131/426 (30%), Gaps = 31/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        V  I+++  +  G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 26  GMNDYLPAETAVWQRVEQILKQVLSSYGFSEIRMPIVEQTPLFKRAIGEVTDVVEKEMYT 85

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 86  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRYERPQKG---RYRQF 141

Query: 156 LMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
               A  F    P+            +  +     ++       S     +  H  +   
Sbjct: 142 HQIGAEVFGLQGPDIDAELIMMTARWWKALGIADHVRLELNSIGSLEARANYRHALVAFL 201

Query: 215 DTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +     +   C +     P+   ++   DI +L +            S  H   L   L 
Sbjct: 202 EQHVEVLDEDCKRRMYSNPLRVLDSKNPDIQALLNDAPTLGDYLDDESREHFAGLCRQLD 261

Query: 273 ------ENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                    +   RG++     +F       G + ++     + G   +       + G 
Sbjct: 262 AAGIAYRVNQRLVRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVEQLGGRATPAVGF 321

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GC 377
                   ++                P ++  + + A  Q  + A   +  +L       
Sbjct: 322 AMGLERLVLLV-------QAVNPEFEPTRVVDVYVIASGQGVQSAALLLAEQLRDALPEL 374

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +  +  G     QFA AD  G  + +++G   V++ ++  K    G ++ ++  +    
Sbjct: 375 KLMSNFGGGNFKKQFARADKWGARIALVLGEDEVANGQLVFKDLRNGEQQTLAQRDAATT 434

Query: 438 ASHRFS 443
            +    
Sbjct: 435 LAALLQ 440


>gi|307352954|ref|YP_003894005.1| glycyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
 gi|307156187|gb|ADN35567.1| glycyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
          Length = 572

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 65/410 (15%), Positives = 128/410 (31%), Gaps = 69/410 (16%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + + TD  R        LPF   QI   +R+E+ PR G++R REF   +A  F
Sbjct: 159 YLRPETAQGIFTDFNRLLRFYRDKLPFGTVQIGKSYRNEISPRQGMIRLREFTQAEAEIF 218

Query: 164 DLTPEGSK-------------------HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
                                       +        ++     G+ +    A       
Sbjct: 219 IHPDHKDHPAFSRYADREVPLLSIADQENKECRKEMSMKDGVASGIIANEYVAYYIAQTH 278

Query: 205 DLS------------------HEFIVLADTGETQVFCSKDFM-DFPIPSENTDFDDIISL 245
           D                           D  + ++F  +    +    ++ T++D     
Sbjct: 279 DFMLTCGISPDKVRFRQHLPDERAHYATDCWDAEIFSERFGWVEMVGIADRTNYDLNAHA 338

Query: 246 NSIVEQWTAPYAATS-----DVHNEKLFDSLPENKRVSARGI----------EVGHIFYF 290
               + +T            +        +L    R  A+ +          E G     
Sbjct: 339 KQSGDPFTVFIQYDETKRIRETKVVANMGALGPKYRNRAKAVADALAVSSPSENGAEIEL 398

Query: 291 GTKYSLPMSATF------KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI------ 338
             +  +     +         +G+     +     G  R++ AV+E S D + +      
Sbjct: 399 DGEKIVVPPEFYEVKEVETEINGEYVMPHVIEPSYGIDRILYAVLEHSFDEEMVDGETRN 458

Query: 339 --IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
              +P  VAP +++++ + A D    D    I  +L +      +DD G  IG ++   D
Sbjct: 459 VLRFPPKVAPVQVAVLPLMARD-GLDDIARSIKTKLQEEEILTEYDDSGA-IGRRYRRQD 516

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            +G P  V V      D+ V ++ R + ++    +E++    S      +
Sbjct: 517 EIGTPFAVTVDYDTKEDNTVTVRERDSMMQIRYDIEKLPALLSDLIKGRK 566



 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 24  KLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQS 76
           +L  R G +   S       G   + PLG      +  I R     + G  E+  PT+  
Sbjct: 10  ELARRRGFVWPTSECYGSVAGFIDYGPLGAMMKRKIENIWRYFYVIQDGYYEIECPTIGE 69

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKA 103
             +++ SG    +  +M++     +  
Sbjct: 70  ESIYLASGHVKGFADKMIQCPHCGEYH 96


>gi|219851699|ref|YP_002466131.1| glycyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
 gi|219545958|gb|ACL16408.1| glycyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
          Length = 573

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 64/406 (15%), Positives = 120/406 (29%), Gaps = 71/406 (17%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + + TD  R        LPF   QI   +R+E+ PR G++R REF   +A  F
Sbjct: 160 YLRPETAQGIFTDFTRLLRFYRDKLPFGAVQIGKSYRNEISPRQGMIRLREFTQAEAEIF 219

Query: 164 DLTPEGSKHSYNKMFVS------------------------------------YLRIFHR 187
               +     + +                                        Y      
Sbjct: 220 VHPEQKKHPHFERYADYTMDLLGYPEQLACKPAVTISMAEAVAEGRIANEYVAYYIALTH 279

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLA-DTGETQVFCSKDFM-DFPIPSENTDFDDIISL 245
             L  + +R +       L  E    A D  + ++   +    +    ++ TD+D     
Sbjct: 280 QMLTRLGIRPDRLRFRQHLPDELAHYAEDCWDAEILSDRFGWVETVGIADRTDYDLKAHA 339

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPE----NKRVSARGIEVGHIFYFGTKYSLPMSAT 301
               + +T       +V  E     + +      R   +   V       T     +   
Sbjct: 340 AQSGDSFTVFI-PFDEVKRESRRQIVADMGALGPRFRGKAKAVADAIANSTPTDEGVWVE 398

Query: 302 FKGAD------------------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI----- 338
             G                    G++    +     G  R+  A++E+  D + +     
Sbjct: 399 VDGEQVLITPDLYKVREVEIEVRGEEVMPHVIEPSYGIDRICYAILENCFDEEEVDGEIR 458

Query: 339 ---IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   VAP ++++  +   D         +   L  +G    +DD G  IG ++   
Sbjct: 459 AVLHLSPEVAPVQVAVFPLMNRDD-LDTIAWDLTTTLKHLGVQAEYDDSGA-IGRRYRRQ 516

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D +G P  V +      D  V ++ R +  +  + L EV       
Sbjct: 517 DEIGTPFAVTIDYDTREDQTVTLRDRDSMRQVRVPLGEVPELVRRL 562



 Score = 56.7 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/345 (12%), Positives = 81/345 (23%), Gaps = 7/345 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G   + PLG      +  + R     R G  E+  PT+    +++ SG    +  +M +
Sbjct: 29  AGFIDYGPLGAMMKRRIENVWRAFYVVREGYYEIECPTIGQEAIYIASGHVKGFSDKMFQ 88

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                    +      E   +I  +   S   L      I+     +      V      
Sbjct: 89  CPHCK--EFLRADHVVEGAGEIVNAGTMSAEALAEALAPIECPLCTKPIGTVDVFNFSLM 146

Query: 156 LMKDAYSFDLTPEG----SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                             +       F   LR +            +S           I
Sbjct: 147 FSTSIGPGSQRTGYLRPETAQGIFTDFTRLLRFYRDKLPFGAVQIGKSYRNEISPRQGMI 206

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            L +  + +            P      D  + L    EQ     A T  +        +
Sbjct: 207 RLREFTQAEAEIFVHPEQKKHPHFERYADYTMDLLGYPEQLACKPAVTISMAEAVAEGRI 266

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                     +    +   G +            +   +        I + R        
Sbjct: 267 ANEYVAYYIALTHQMLTRLGIRPDRLRFRQHLPDELAHYAEDCWDAEILSDRFGWVETVG 326

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             D          A    S       D+V R++  +I A +  +G
Sbjct: 327 IADRTDYDLKAHAAQSGDSFTVFIPFDEVKRESRRQIVADMGALG 371


>gi|269791928|ref|YP_003316832.1| prolyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099563|gb|ACZ18550.1| prolyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 478

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 70/449 (15%), Positives = 140/449 (31%), Gaps = 79/449 (17%)

Query: 3   RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN 62
            S+++L +++     AE+A +   +R  M+ +         P G    +++     E   
Sbjct: 12  FSQWYLDVIRA----AELADYA-PVRGCMVIR---------PTGYALWESIQRHFDEAFK 57

Query: 63  RTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            TG +    P L     L  E+   + +  E   +       +                 
Sbjct: 58  ETGHVNAYFPLLIPNSFLEREAQHVEGFAPECAVVTHAGGDELEEPLVVRP--------- 108

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                                                       +     H Y+K   S+
Sbjct: 109 -------------------------------------------TSETVIGHMYSKWVQSW 125

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +   +      MR E  P     + EF+     G T     ++ M+  +      ++ 
Sbjct: 126 RDLPILINQWCNVMRWEKRPRLFLRTSEFL--WQEGHTAHATREEAMEETLRMLGV-YET 182

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           I+     +   T   +            +  E      + ++ G   + G  ++      
Sbjct: 183 IMKDVLALPVVTGEKSEGERFPGADNTFTC-EAMMSDRKALQAGTSHFLGQNFAKAFDIR 241

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           F+  DG+  Y    S+G+ + R++ A+I +  D  G+I P  VAP K++L+ I     + 
Sbjct: 242 FQDRDGEVKYAWTTSWGV-STRLIGAIIMTHSDDDGLILPPRVAPVKVALLPISTDQDLI 300

Query: 362 RDACEKIYARLSKV-----GCDVFWDDMG--EQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
             + E     L        G      D     +   +F      G PL++ +G K + + 
Sbjct: 301 SSSLEPKAMELKAAIEDRIGPRTVALDRQYHLRPSDRFFSHLQKGVPLRIELGQKELENR 360

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFS 443
            V +  R  G R D+ +E      +   +
Sbjct: 361 TVRLVCRDNGERIDVPMEGAPERVAEVLN 389


>gi|226291392|gb|EEH46820.1| prolyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 583

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 27/190 (14%)

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-------------------KGADGK 308
                EN   +   IE+ H F+ GT+YS  ++A+                    + +   
Sbjct: 387 CSKCGENSVETHTAIELAHTFHLGTRYSDVLNASVAIPSSILRGSLTTERTALAQSSSTV 446

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              ++MG +GIG  R++AAV ++  D KG+ WP            I   D+      E++
Sbjct: 447 SVPLEMGCHGIGVSRMIAAVADTLADPKGLNWP----RVISPFDVIIISDRELEKEAEQV 502

Query: 369 YARL---SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           Y  L    K   D   DD  + +  +   ADL+G+P+ +++G  +  DSK+EI+ R    
Sbjct: 503 YDTLMESRKADVDAIIDDREKSLTWKLRDADLIGYPVIIVIGKLWKRDSKLEIQCRRLEN 562

Query: 426 -REDMSLEEV 434
            RE +SL+++
Sbjct: 563 FRETVSLQDL 572



 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 39/191 (20%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G++  LPLG +  + +  +I +     GA ++S+ ++ S  LW +SGR      E  + 
Sbjct: 55  SGVFHLLPLGLRVQEKLERLIDKHMRTLGASKLSLSSISSQALWEKSGRLKK-DSEFFKF 113

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            DR +   +  PTHEE +T                                        +
Sbjct: 114 EDRKEARFLLAPTHEEEIT--------------------------------------SLV 135

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
              A +  +     + +YN +  +Y+R+F  L L  I   A+SG +GG LSHEF +    
Sbjct: 136 ASSAGNIGMNQGLDRETYNAVKEAYIRLFDELKLPYIVAAADSGNMGGSLSHEFHLPNSK 195

Query: 217 GETQVFCSKDF 227
           GE  +      
Sbjct: 196 GEDTIVSCSSC 206


>gi|238752474|ref|ZP_04613950.1| Histidyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
 gi|238709323|gb|EEQ01565.1| Histidyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
          Length = 424

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/417 (12%), Positives = 125/417 (29%), Gaps = 21/417 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +  I+++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTAIWQRIEGILKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    +  + 
Sbjct: 70  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYV-GPMFRYERPQKGRYRQFHQM 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLA 214
            ++         +      +  +   L I   + L+ +     ++     +    F+   
Sbjct: 129 GVEVFGLQGPDIDAELILLSARWWRALGISEHVKLELNSIGSLDARADYREALVAFLEQH 188

Query: 215 ------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKL 267
                 D            +D   P      +D   L+  +++ +   +A   ++ ++  
Sbjct: 189 VEVLDEDCKRRMYSNPLRVLDSKNPDVQLLLNDAPKLSDYLDEESKQHFAGLCELLDQAS 248

Query: 268 FDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                  + V         +F       G + ++     + G    +      +  +G  
Sbjct: 249 IPYTVNERLVRGLDYYNRTVFEWVTSSLGAQGTVCAGGRYDGL--VEQLGGRATPAVGFA 306

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
             +  ++             +     +                E +   L+ +     + 
Sbjct: 307 MGLERLVLLVQAVNPEFKVPATVDVYLISSGEGTQS-AAMQLAEHLRDELATLKLMTNY- 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             G     Q   AD  G  + +I+G   V+  +V +K    G +E ++  +V    +
Sbjct: 365 -GGGNFKKQITRADKWGARVALILGESEVAAQQVVVKDLRNGEQETLAQADVAARLA 420


>gi|15807053|ref|NP_295782.1| glycyl-tRNA synthetase [Deinococcus radiodurans R1]
 gi|6459849|gb|AAF11606.1|AE002042_1 glycyl-tRNA synthetase [Deinococcus radiodurans R1]
          Length = 521

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 73/494 (14%), Positives = 137/494 (27%), Gaps = 80/494 (16%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G I Q S      +G Y + PLG +  +N+ A         R     +    +    +
Sbjct: 30  RRGFIFQGSEIYGGLQGFYDYGPLGVELKNNIKAAWWRSNVYERDDMEGLDASIIMHRMV 89

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              SG   ++   M+    +N+K        ++   D+     +        F  +    
Sbjct: 90  LRHSGHEATFSDPMIDNK-KNNKRYRLDHLLKDQKADVQAKVAEIMGESADNFAALVAAL 148

Query: 140 RDELRPRFGVMRSRE----FLMKDAYSFDLTPEGSKHSYNKMFV------SYLRIFHRLG 189
             +        +       F  +     D  P           V       YLR     G
Sbjct: 149 NAKPAQASAAFKEAGVRDPFSGEVGEWTDPKPFNMMFRTTIGPVADEESYGYLRPETAQG 208

Query: 190 LKSIPMRAESGPIGG-----------------------------DLSHEFIVLADTGETQ 220
           + +                                          +  EF V   T E  
Sbjct: 209 IFTNFKNVVDSTSRRLPFGIAQIGKAFRNEITPRNFIFRVRELEQMEIEFFVTPGTDEEW 268

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                +        +    + I  L+   E        T D+  +       E + ++ R
Sbjct: 269 HEHWLEKRLKWWEDQGVPREKIEILDVPKEDLAHYSKRTYDLMYDYPTLGHEEIEGIANR 328

Query: 281 -----------GIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAA- 327
                        E+G +             T       K     +     G  R + A 
Sbjct: 329 SDYDLGSHTKSQSELGLVAKVEENNDSIAKLTIPHPETNKPVVPFVIEPSAGVDRAMLAV 388

Query: 328 --------VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-D 378
                    +E+ ++   +     +AP K+++I +  + +   D  + I A L  +G   
Sbjct: 389 LSEAFTKETLENGNERIVLKLKPHLAPIKVAVIPLARNREEITDVAKAIKAELQGLGLGR 448

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV---SD------SKVEIKHRLTGIREDM 429
           V ++D G  IG  +   D +G P  V V    V    +        V ++ R T  +E +
Sbjct: 449 VLYEDSG-NIGKAYRRHDEVGTPYCVTVDFDTVGLGENTDESLKDTVTVRDRDTLAQERV 507

Query: 430 SLEEVINYASHRFS 443
            + E+  +   +  
Sbjct: 508 KISELAGWIQAKLR 521


>gi|331653942|ref|ZP_08354943.1| histidine--tRNA ligase [Escherichia coli M718]
 gi|331048791|gb|EGI20867.1| histidine--tRNA ligase [Escherichia coli M718]
          Length = 424

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 117/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYREALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|309805541|ref|ZP_07699586.1| anticodon binding domain protein [Lactobacillus iners LactinV
           09V1-c]
 gi|309807191|ref|ZP_07701165.1| anticodon binding domain protein [Lactobacillus iners LactinV
           03V1-b]
 gi|309808834|ref|ZP_07702719.1| anticodon binding domain protein [Lactobacillus iners LactinV
           01V1-a]
 gi|315653429|ref|ZP_07906351.1| proline--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|308165192|gb|EFO67430.1| anticodon binding domain protein [Lactobacillus iners LactinV
           09V1-c]
 gi|308166412|gb|EFO68617.1| anticodon binding domain protein [Lactobacillus iners LactinV
           03V1-b]
 gi|308167960|gb|EFO70093.1| anticodon binding domain protein [Lactobacillus iners LactinV
           01V1-a]
 gi|315489354|gb|EFU78994.1| proline--tRNA ligase [Lactobacillus iners ATCC 55195]
          Length = 106

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
               WP  VAPF+I +I +   +       +K+    S    DV +DD  E+ G +F  A
Sbjct: 1   MAFFWPKEVAPFEIHIIQMNMKNDEQTVVSKKLEEIFSDK-YDVLYDDRNERPGVKFNDA 59

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           DL+G P+++IVG + VS+  VE+K        +MSL+ +  Y S    
Sbjct: 60  DLIGAPIRIIVGRR-VSEQIVEVKKSTEQESVEMSLDSLTEYISKELR 106


>gi|229824082|ref|ZP_04450151.1| hypothetical protein GCWU000282_01386 [Catonella morbi ATCC 51271]
 gi|229786436|gb|EEP22550.1| hypothetical protein GCWU000282_01386 [Catonella morbi ATCC 51271]
          Length = 442

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/410 (13%), Positives = 108/410 (26%), Gaps = 11/410 (2%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP   +    +    R         E+  P  ++ +L+  S     +   KEM  
Sbjct: 9   GTVDILPAESRIWQYIEDSARAVFETYNFQEIRTPLFEAYELFARSSGDTSEIVSKEMYD 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRP----RFGV 149
             D+ D+     P     +   F  +         P+  Y +   FR E       R   
Sbjct: 69  FKDKGDRHCALRPEGTAGVVRAFVENKLFGPEHAKPYKVYYMGSMFRYERPQAGRQRQFN 128

Query: 150 MRSREFLMKDAYSFDLTPEG--SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
               E       + D                       + LG      R     +     
Sbjct: 129 QIGVEVFGSTNPATDAETIALAWDFFQELGIEGLTLYINSLGSSQDRARYRQALVDYFTP 188

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
               + AD+           +D   P +     +   +   +   +  +  T     E L
Sbjct: 189 LADQLSADSQRRLTDNPMRILDSKAPEDKALVANAPKIPDYLSPESKDHFETVKAMLEAL 248

Query: 268 FDS-LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
               L +   V         IF          + +     G+   +     G        
Sbjct: 249 EIPYLVDPSVVRGLDYYQDTIFEIMVDDQAIGAKSTICGGGRYDGLVEALGGPATPGFGF 308

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +               V   +   + +    Q       ++     K G     D +  
Sbjct: 309 GIGVERLLLLLKQQEVEVPEAEPLDVYVMGLGQASNIMALRLVQAARKEGLLAERDYLDR 368

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            + +QF  AD L   + + +G   ++   V+ KH  +G +  + L++V+ 
Sbjct: 369 SLKAQFKQADKLKAQVILTIGEDELAAGTVQAKHPTSGKQVTLPLDQVLE 418


>gi|260773384|ref|ZP_05882300.1| histidyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
 gi|260612523|gb|EEX37726.1| histidyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
          Length = 412

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/411 (15%), Positives = 124/411 (30%), Gaps = 14/411 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V   ++   +  G  E+ +P ++   L+  + G   D   KEM   ADRN
Sbjct: 5   LPTQSPLWQKVENAVKNVVSAYGYSEVRMPIVEMTPLFSRAIGEVTDVVEKEMYTFADRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRSREFLM 157
             ++   P            H   Y      +Y     + +   + R R       E   
Sbjct: 65  GDSLSLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQCGVEVFG 124

Query: 158 KDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            D    D           +            + +G  +      S  I     H+ ++  
Sbjct: 125 IDGPDVDAELIMMTARLWRELGIAEHVRLELNSIGSLAARADYRSALIEYLEQHQDVLDE 184

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSLPE 273
           D            +D   P   +   D   L   ++  +   ++   ++ +    +    
Sbjct: 185 DCKRRMYTNPLRVLDSKNPDVQSILGDAPELADYLDAESKQHFSGLCELLDAAGIEYTVN 244

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            + V         +F      SL    T  G  G  +   +   G  A   V   +    
Sbjct: 245 QRLVRGLDYYNRTVFE-WITESLGSQGTVCG--GGRYDGLVEQLGGKATPAVGFAMGLER 301

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGSQ 391
               +    +    +   + I    +    A  K+  +L +   G  V     G     Q
Sbjct: 302 LVLMMETLGNTDVRRSVDVYIVTAGEGTTMAGMKLAEQLREQVPGLRVMNHCGGGNFKKQ 361

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           F  AD +G  + +++G   +++  V +K  L G +  +S  ++ +  +H  
Sbjct: 362 FKRADKVGAAVALVLGENEIAEKTVVLKDLLGGQQTTLSQTDIASQLAHLV 412


>gi|11387153|sp|Q9RSR5|SYG_DEIRA RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
          Length = 506

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 73/494 (14%), Positives = 137/494 (27%), Gaps = 80/494 (16%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G I Q S      +G Y + PLG +  +N+ A         R     +    +    +
Sbjct: 15  RRGFIFQGSEIYGGLQGFYDYGPLGVELKNNIKAAWWRSNVYERDDMEGLDASIIMHRMV 74

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              SG   ++   M+    +N+K        ++   D+     +        F  +    
Sbjct: 75  LRHSGHEATFSDPMIDNK-KNNKRYRLDHLLKDQKADVQAKVAEIMGESADNFAALVAAL 133

Query: 140 RDELRPRFGVMRSRE----FLMKDAYSFDLTPEGSKHSYNKMFV------SYLRIFHRLG 189
             +        +       F  +     D  P           V       YLR     G
Sbjct: 134 NAKPAQASAAFKEAGVRDPFSGEVGEWTDPKPFNMMFRTTIGPVADEESYGYLRPETAQG 193

Query: 190 LKSIPMRAESGPIGG-----------------------------DLSHEFIVLADTGETQ 220
           + +                                          +  EF V   T E  
Sbjct: 194 IFTNFKNVVDSTSRRLPFGIAQIGKAFRNEITPRNFIFRVRELEQMEIEFFVTPGTDEEW 253

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                +        +    + I  L+   E        T D+  +       E + ++ R
Sbjct: 254 HEHWLEKRLKWWEDQGVPREKIEILDVPKEDLAHYSKRTYDLMYDYPTLGHEEIEGIANR 313

Query: 281 -----------GIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAA- 327
                        E+G +             T       K     +     G  R + A 
Sbjct: 314 SDYDLGSHTKSQSELGLVAKVEENNDSIAKLTIPHPETNKPVVPFVIEPSAGVDRAMLAV 373

Query: 328 --------VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-D 378
                    +E+ ++   +     +AP K+++I +  + +   D  + I A L  +G   
Sbjct: 374 LSEAFTKETLENGNERIVLKLKPHLAPIKVAVIPLARNREEITDVAKAIKAELQGLGLGR 433

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV---SD------SKVEIKHRLTGIREDM 429
           V ++D G  IG  +   D +G P  V V    V    +        V ++ R T  +E +
Sbjct: 434 VLYEDSG-NIGKAYRRHDEVGTPYCVTVDFDTVGLGENTDESLKDTVTVRDRDTLAQERV 492

Query: 430 SLEEVINYASHRFS 443
            + E+  +   +  
Sbjct: 493 KISELAGWIQAKLR 506


>gi|255658301|ref|ZP_05403710.1| histidine--tRNA ligase [Mitsuokella multacida DSM 20544]
 gi|260849618|gb|EEX69625.1| histidine--tRNA ligase [Mitsuokella multacida DSM 20544]
          Length = 421

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 122/407 (29%), Gaps = 19/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            + +   IRE   R G  E+  P  +  +L+        D   KEM    DR  +++   
Sbjct: 20  WNYIEGKIREICGRYGFEEIRTPLFEHTELFHRGIGEGTDVVDKEMYTFEDRGGRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P +   +   +  +     +     + I   FR +        R REF      S     
Sbjct: 80  PENTASVVRAYLQNKLYGDSSLVKLFYIGSMFRYDRPQAG---RMREFHQFGVESLGEEN 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT-----GETQVF 222
             +      + V +L+    LGLK + +   S            VL D       +    
Sbjct: 137 PMADAEIIMLAVDFLQS---LGLKDLKLSLNSVGCPKCRPVYRKVLQDYFRDKLDDLCED 193

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--- 279
           C   F   P+   +   D      +   + T         H EK+   L           
Sbjct: 194 CQDRFERSPLRILDCKVDADKPYMADAPKITDCLCDECREHFEKVQSYLTNAGIEFELDP 253

Query: 280 ---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F  KY+   + +     G+   +     G     V  A         
Sbjct: 254 RLVRGLDYYTKTAFEIKYAPLGAQSAVAGGGRYDGLIEEIGGKPTPAVGFATGLERVLLA 313

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                      K +   + A  +  +     +  +L + G     D  G  + +Q   A+
Sbjct: 314 LEKQGLIPEQPKKTDAFVVALGEAAKAPAFTLLTKLRRAGLKASMDYAGRSMKAQMKQAN 373

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                  +I+G   V +S V +K     +++ +S + +I        
Sbjct: 374 KANARFALIIGEDEVKESCVMLKDMEKSVQQKVSFDAIIEKLCAEVK 420


>gi|256851204|ref|ZP_05556593.1| histidyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260660628|ref|ZP_05861543.1| histidyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|282934671|ref|ZP_06339914.1| histidine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|297206070|ref|ZP_06923465.1| histidine--tRNA ligase [Lactobacillus jensenii JV-V16]
 gi|256616266|gb|EEU21454.1| histidyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260548350|gb|EEX24325.1| histidyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|281301246|gb|EFA93547.1| histidine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|297149196|gb|EFH29494.1| histidine--tRNA ligase [Lactobacillus jensenii JV-V16]
          Length = 426

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/408 (15%), Positives = 125/408 (30%), Gaps = 15/408 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            + V  I R+   +    E+  P+ +S +++  S     D   KEM    D+  + +   
Sbjct: 20  WEKVEQIARDFFKQANYREIRTPSFESYEVFSRSSGETSDVVEKEMYDFNDKGGRHIALR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLT 166
           P     +   F    K Y       + +          R    R REF      SF    
Sbjct: 80  PEGTAGVVRSFV-ENKMYGPDVVKPFNVYYIESMFRYERPQAGRQREFHQIGCESFGSNN 138

Query: 167 PEGSKHSYNKMFV--------SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           P     +              ++    + LG + +  +     +      +  +  D+  
Sbjct: 139 PLADIETIMMGNDLLNKLGVKNFELHINSLGNEDVRQKYHDALVDYFTPVKDQLSEDSQR 198

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDSLPENKRV 277
                    +D     +     +   +   ++    A +   +D  ++     + ++  V
Sbjct: 199 RLGKNPLRILDSKEEQDKQFLPNAPRIVDYLDDESKANFKYITDALDKLGIKYVLDDDLV 258

Query: 278 SARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                  G IF F      L  S T     G+ +++     G     V   + E      
Sbjct: 259 RGLDYYTGVIFEFMVADTDLWASPTTVLGGGRYNHLVEEFGGPETPAVGFGIGEERLMLV 318

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                  +         I    +       ++   L K G  V +D   +++ +QF  AD
Sbjct: 319 LEKQNPELFADTGIDFFIANIGEGTAMKSVELARTLRKQGKKVQYDVDQKKLKNQFKKAD 378

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     + +G K +++  V IK    G +   S +E +N  S    N
Sbjct: 379 RVHAEFVITLGEKELAEGNVSIKRLADGKQIKFSWDE-MNNISEAMKN 425


>gi|288934095|ref|YP_003438154.1| histidyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|288888824|gb|ADC57142.1| histidyl-tRNA synthetase [Klebsiella variicola At-22]
          Length = 424

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/421 (12%), Positives = 118/421 (28%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETALWQRIEGSLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYVGPMFRHERPQKGRYRQFHQIG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +       
Sbjct: 130 AEVFGLQGPDIDAELIMLTARWWRELGISDHVSLELNSIGSLEARANYRDALVAYLEQFT 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW--TAPYAATSDVHNE-- 265
             +  D+           +D   P      +D  +L   +++   T      + + +   
Sbjct: 190 DKLDEDSKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDEESKTHFAGLCALLDDAGI 249

Query: 266 --KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L        R +        G++ ++     + G   +         G     
Sbjct: 250 RYTVNQRLVRGLDYYNRTVFEWVTTSLGSQGTVCAGGRYDGLVEQLGGRATPGVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A  ++  ++     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGTDTQSAAMRLAEQVRDALPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + ++VG   ++D  V +K   +G +  ++ E V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARIALVVGESEIADGNVVVKDLRSGEQTTVTQESVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|256017338|ref|ZP_05431203.1| histidyl-tRNA synthetase [Shigella sp. D9]
 gi|332278333|ref|ZP_08390746.1| histidyl-tRNA synthetase [Shigella sp. D9]
 gi|332100685|gb|EGJ04031.1| histidyl-tRNA synthetase [Shigella sp. D9]
          Length = 424

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/421 (12%), Positives = 116/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     +     +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDCLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|254166523|ref|ZP_04873377.1| glycyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289596411|ref|YP_003483107.1| glycyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197624133|gb|EDY36694.1| glycyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289534198|gb|ADD08545.1| glycyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 557

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 94/281 (33%), Gaps = 13/281 (4%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
            +   V + + F            +   +      E   +AD G+  +     +    + 
Sbjct: 275 IDLNRVRFRQHFKEELAHYSRDTWDCEILLSSGWVEVTGIADRGDYDLKRHMTYSGRDLT 334

Query: 234 SENTDFDDIISLNSIVE---QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
           +     +        +    +   P          ++ +S+          IE  ++   
Sbjct: 335 AIRRFKEPKKIKIKKLRARMEILGPMFKKDAKKIAEILESMEYVDGNIEIEIEGKNVKIP 394

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI------IWPDSV 344
              Y + +     G  G+     +     G  R++ AV+E S   +             +
Sbjct: 395 RDAYEIKIEEEVIG--GERFVPHVIEPSFGIDRILYAVLEHSFYEREDTGYKVLKLKPKI 452

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           AP K+++  + A D         +  ++ + G   ++DD G  IG ++A AD +G P  +
Sbjct: 453 APIKVAIFPLMAKD-GLDAVARDVLNKIREGGITSYYDDSG-SIGRRYARADEIGVPFCI 510

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V  + + D+ V I+ R +  ++ + ++ +           
Sbjct: 511 TVDYESLKDNTVTIRERDSAKQKRVRIDAIPKILEDLVDER 551



 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 47/151 (31%), Gaps = 2/151 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           G Y + PLG    +N+  + ++E   + G + +  P +    ++V SG  + +   M+R 
Sbjct: 30  GFYDYGPLGAALKENILKVWKDEFVIKDGLLMLDGPNIGPELMYVASGHAEKFADYMVRC 89

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                         + V+ +  +   K                  EL             
Sbjct: 90  KKC-GHVFRADGLLKGVVENPEKLDKKGISKAIKEHGIKCPDCGGELTEPESFHLMFSTT 148

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           +       L PE ++  +    + Y     +
Sbjct: 149 VGLDKRAFLRPETAQGIFVNFPIMYRLNREK 179


>gi|255534200|ref|YP_003094571.1| glycyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255340396|gb|ACU06509.1| Glycyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
          Length = 519

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 90/241 (37%), Gaps = 24/241 (9%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E +       +   + +EN  F D   L        A YA  +     K      E + +
Sbjct: 291 EWKQKRLNWHLALGLGAENYKFHDHEKL--------AHYANAAADIEFKFPFGFKELEGI 342

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV--------- 328
            +R            K+S      F     +++   +    +G  R+  A+         
Sbjct: 343 HSRTDFDLSAHE---KHSGRKLQYFDSERNENYVPFVVETSVGLDRLFLAIFSNSLKDEV 399

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E   +   +  P ++AP K +++ +   D    +  EKI+  L     +V ++D    I
Sbjct: 400 LEDGSERTVLSLPPALAPVKAAILPLMKKD-GLGEYGEKIFNDLK-FDFNVIYEDKD-SI 456

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           G ++   D +G P  + +    + D+ V ++ R T  +E +++ ++        +N R +
Sbjct: 457 GKRYRRQDAIGTPFCITIDHDTLKDNTVTLRDRDTMKQERVAVADL-RRIIDEKTNFRNL 515

Query: 449 L 449
           L
Sbjct: 516 L 516



 Score = 41.6 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 48/185 (25%), Gaps = 15/185 (8%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTG--AIEMS 70
           ++ SH      G I   S        IY +   G +  +N+     +   +     + + 
Sbjct: 16  KLISHAKE--YGFIFPSSEIYDGLSAIYDYGQNGAELKNNIKQYWWKAMVQMNENIVGID 73

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
                   +W  SG  D++   ++   D   +        E+    +     K       
Sbjct: 74  SAIFMHPTIWKASGHVDAFNDPLIDNKDSKKR-FRADVLLEDYCAKLEEKAQKEIDKAAK 132

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH--SYNKMFVSYLRIFHRL 188
            F       ++E     G +       K   S       ++       +           
Sbjct: 133 RFGD--TFDKNEFETTNGRVLEYREKQKTILSRMAKSLENEDLADVKSLIEELEIADPDT 190

Query: 189 GLKSI 193
           G K+ 
Sbjct: 191 GSKNW 195


>gi|121535603|ref|ZP_01667410.1| histidyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
 gi|121305843|gb|EAX46778.1| histidyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
          Length = 421

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 57/404 (14%), Positives = 118/404 (29%), Gaps = 17/404 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    R+        E+  P  +  +L++       D   KEM    DR  +++   
Sbjct: 20  WQYIEQAARDLCRLYAYQEIRTPIFEHTELFLRGIGETTDIVSKEMYTFTDRGGRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P +   +   +  H       P   + I   FR +      + +  +F ++        P
Sbjct: 80  PENTAAVVRSYLEHKLYTAPQPVKVFYIGPMFRYDRPQAGRLRQFHQFGIEA--IGAPGP 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCSK 225
                        + ++       +I         PI  +    F+      E    C  
Sbjct: 138 AVDAEIIALAVQFFEQLGLTGLELNINSVGCPRCRPIYRERLQNFL-RDKLFELCRDCQS 196

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA------ 279
            F   P+   +   +   +L+    +           H  KL + L              
Sbjct: 197 RFERNPLRILDCKNETCGALSQGAPRIVDCLCDECTSHFVKLQEMLAAAGIRYTLNPRLV 256

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG++      F  +Y L  + +     G+   +     G     +  A+           
Sbjct: 257 RGLDYYTKTAFEIQYPLLGAQSAICGGGRYDGLIEECGGQPTPAIGFAIGLERVLLALEK 316

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
                       + I    +  +    ++  RL + G     D M   I +Q   A+   
Sbjct: 317 QALLPMTAGGIDVFIAPIGERAQAVAFELLCRLRRAGITCDMDFMSRGIKAQMKHAN--K 374

Query: 400 FP--LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +P     I+G   V+  +V +K+  +G +E ++  +V       
Sbjct: 375 YPARFAAIIGDDEVARGQVTLKNMESGEQEAVAFGDVEQKLRAE 418


>gi|94968234|ref|YP_590282.1| histidyl-tRNA synthetase [Candidatus Koribacter versatilis
           Ellin345]
 gi|122986376|sp|Q1ISE2|SYH_ACIBL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|94550284|gb|ABF40208.1| histidyl-tRNA synthetase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 441

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 69/436 (15%), Positives = 127/436 (29%), Gaps = 50/436 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKE 92
           G    LP   +  + V A +R+   R    E+  P  +   L+      E+   D   KE
Sbjct: 7   GTRDLLPPDTELWNRVEATVRDVFQRYNFHEIRTPIFEDTALFARGVGEET---DIVSKE 63

Query: 93  MLRLADRND------KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           M    D+        + +   P +   +   +  H  +        Y I  +FR E   +
Sbjct: 64  MFTWEDKARAQSEKSQQLTLRPENTAGVVRAYIEHQMAKSGGLQKLYYIGPQFRRERPQK 123

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSK--HSYNKMFVSYLRIFHRLGLKSIPMRAES--GPI 202
               R R+F    A      P GS+      ++      +   +GL    +   S     
Sbjct: 124 G---RYRQFFQIGAEVIGPPPSGSESPARDAEVIEMLATLLEEVGLTGWTLYLNSVGDAN 180

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW---------- 252
                +E +  A        C                  +     I+E            
Sbjct: 181 CRPAYNEALRQALASVKDKMCGDCQRRAETNPLRVLDCKVPEDQPIIETLPKIGDYLDDA 240

Query: 253 -TAPYAATSDVHNE-----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-- 304
             A +AA   + ++      +   +        R          G + ++     + G  
Sbjct: 241 CKAHFAAVRAMLDKVGVPYTVNPRMVRGLDYYTRTTFEFTHGELGAQSAVLGGGRYDGLS 300

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                       + IG  R+V A+            P         +  + A        
Sbjct: 301 EALDGPKAPGIGFAIGEDRLVMAL--------QAAKPAEPMTIDAYVAPLGAG---TNAE 349

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              I  +L + G  V   D   ++   F  A+  G    VI G   V++++  +K   TG
Sbjct: 350 ALGICRKLRRQGLRVELGDESFRLKKSFEAAERAGAKYIVICGENEVANNEFSVKELATG 409

Query: 425 IREDMSLEEVINYASH 440
            +E ++  E+  Y  +
Sbjct: 410 KQESVARAELAFYIRN 425


>gi|114046806|ref|YP_737356.1| histidyl-tRNA synthetase [Shewanella sp. MR-7]
 gi|123326713|sp|Q0HX56|SYH_SHESR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|113888248|gb|ABI42299.1| histidyl-tRNA synthetase [Shewanella sp. MR-7]
          Length = 425

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 62/417 (14%), Positives = 121/417 (29%), Gaps = 16/417 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        V A++R      G  E+  P +++ DL+  S G   D   KEM  
Sbjct: 10  GMNDILPTQSPLWQKVEAVLRASVAAYGYSEIRTPIVENTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y +   FR E   +    +  +F
Sbjct: 70  FEDRNGDSLTLRPEGTASTVRAGNEHGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQF 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            ++         +      +                 + LG  +         I     H
Sbjct: 129 GVEVYGIGSADIDAEVLMLSARLWEKLGISEHVTLELNTLGDPAERAAYREALIAFLEQH 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKL 267
           +  +  D+           +D   P   +   D  +L   + Q ++  +A   ++ +   
Sbjct: 189 KDKLDEDSQRRMYSNPLRVLDSKDPQVQSILGDAPALMDYLGQESSQHFAQLRELLDAVG 248

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                  + V         +F      SL    T       D  V             A 
Sbjct: 249 IQYRVNPRLVRGLDYYNRTVFE-WVTNSLGSQGTVLAGGRYDGLVAQLGGKDTPAVGFAM 307

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMG 385
            +E        +      P  + +      D    +   K+   L        V     G
Sbjct: 308 GLERIVLLLETLELTQDIPAAVDVYVAAMGDSCLVE-AIKVAQELRSTLPTLRVMSHCGG 366

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHR 441
                Q   AD  G  + +++G + +++  V +K+ R    ++ ++   +  + +  
Sbjct: 367 GNFKKQIKRADKSGAQVALLIGEEELAEGVVTVKYLRNDNEQQRVARNALSAFLAEL 423


>gi|149921717|ref|ZP_01910165.1| glycyl-tRNA synthetase [Plesiocystis pacifica SIR-1]
 gi|149817455|gb|EDM76927.1| glycyl-tRNA synthetase [Plesiocystis pacifica SIR-1]
          Length = 508

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 107/355 (30%), Gaps = 57/355 (16%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +              +PF   Q+   FR+E+     + RS EF   +   F
Sbjct: 200 YLRPETAQGMFVQFLNVQQSMAAKIPFGIAQMGKSFRNEVTVEHFIFRSCEFEQMEMEWF 259

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
              P   +        + ++ +  +GL      A+   +    S E    +D      + 
Sbjct: 260 CE-PGTGREWLEYWKETRMKWWQSIGLS-----ADKLRLREHESSELAHYSDGTFDVEYD 313

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                D      +    D   LN+  E        T    +       PE  +   R   
Sbjct: 314 FPWGWDELEGIASRTNYD---LNAHAEGSNKKLVYTDPEKDN------PETGKKGWR--- 361

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW--- 340
                                     +   +     GA R + AV+ +++D +       
Sbjct: 362 --------------------------YVPHVVEPAAGATRGMLAVLCAAYDEEPGDESGK 395

Query: 341 --------PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      +AP K +++ +    Q   +   KI       G +   D M   IG ++
Sbjct: 396 GARTVLRLHPRLAPVKAAVLPLVRK-QGMPETARKIADAFFAAGVNAKLD-MQHAIGRRY 453

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           A  D +G P  + V  +   D  V I++R    +E + +E  ++         R 
Sbjct: 454 ARHDEIGTPYCITVDGQTAEDDTVTIRYRDDRRQERIKVEAAVDEVRRALREGRE 508


>gi|187733422|ref|YP_001881305.1| histidyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|229558742|sp|B2TXT9|SYH_SHIB3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|187430414|gb|ACD09688.1| histidyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|320175077|gb|EFW50190.1| Histidyl-tRNA synthetase [Shigella dysenteriae CDC 74-1112]
          Length = 424

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/421 (13%), Positives = 117/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK--VGCDVFW 381
               ++                   I  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPIVDIYLVASGADTQSAAMALAERLRDELQGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVAVVLGESEVTNGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|229918418|ref|YP_002887064.1| histidyl-tRNA synthetase [Exiguobacterium sp. AT1b]
 gi|259511948|sp|C4L534|SYH_EXISA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229469847|gb|ACQ71619.1| histidyl-tRNA synthetase [Exiguobacterium sp. AT1b]
          Length = 427

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/406 (14%), Positives = 106/406 (26%), Gaps = 17/406 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V   +R+   R    E+  P  ++ +L+  S     D   KEM  L  +        
Sbjct: 19  WQYVEEKLRDMSARYNYKEIRTPIFETTNLFTRSVGETTDIVQKEMFTLVKKGKDEYTLR 78

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +      + +    + P   Y +   FR E   +    +  ++ ++        
Sbjct: 79  PEGTASVVRAFVTNKLFGNPDQPTKLYYMGPMFRYERPQKGRFRQLHQYGVEA--IGSSD 136

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFIVLADTGETQVFCS 224
           P       +  +  Y     +     +     AES     D           GE    C 
Sbjct: 137 PAVDAEVISLAYSIYKSFGLQKIKVVVNSLGDAESRNAHRDALIR-HFEPVAGELCQDCQ 195

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF---DSLP---ENKRVS 278
                 P+   +   D                   S  + E++    D+L    E     
Sbjct: 196 SRLYKNPLRILDCKVDRDHPSMKTAPSILEYLNEESKAYFEQVLAQLDALGVAYEVDPTL 255

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RG++      F                G   Y  +     G                  
Sbjct: 256 VRGLDYYTHTAFEIMSEAEGFGAITTLCGGGRYNGLVQDIGGPDMPGIGFGIGLERLILA 315

Query: 339 IWPD---SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           +  +         + +  +   ++       ++   L   G     D  G +   QF  A
Sbjct: 316 LENEGVLPELETGLDVFIVAQGEKEVELTATRLLQLLRMEGFKADRDYQGRKFKGQFKQA 375

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D L     VI+G   V      +K   TG + D+ L  V +     
Sbjct: 376 DRLKAKFTVILGDDEVERGAAALKDMTTGEQVDVPLSAVADKIREL 421


>gi|288549933|ref|ZP_05968676.2| histidine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
 gi|288317244|gb|EFC56182.1| histidine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
          Length = 440

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/425 (13%), Positives = 121/425 (28%), Gaps = 31/425 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 26  GMNDYLPGETAIWQRIEGTLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 85

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 86  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFNQLG 145

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            E         D         + +       +   L         E+     D    F+ 
Sbjct: 146 VEVFGLQGPDIDAELIMLTARWWRALGIAEHVSLELNS---IGSLEARANYRDALVAFLE 202

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD--- 269
                  +  C +     P+   ++   D+ +L +          A S  H + L     
Sbjct: 203 QHKDKLDED-CQRRMYSNPLRVLDSKNPDVQALLNDAPALGDYLDAESREHFDGLCKLLE 261

Query: 270 ----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                      L        R +        G++ ++     + G   +       + G 
Sbjct: 262 AAGIAYTVNQRLVRGLDYYNRTVFEWVTTSLGSQGTVCAGGRYDGLVEQLGGRAAPAVGF 321

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                   ++                   +  I + A     + A  ++  R+     DV
Sbjct: 322 AMGLERLVLLV-------QAVNPEFKADSVVDIYLVASGADTQSAAMQLAERVRDALPDV 374

Query: 380 FW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
               +  G     QFA AD  G  + +++G   V++  V +K   +G +  ++ + V  +
Sbjct: 375 KLMTNHGGGNFKKQFARADKWGASIALVLGESEVANGDVVVKDLRSGEQTTVTQDGVAAH 434

Query: 438 ASHRF 442
                
Sbjct: 435 LRTLL 439


>gi|120598179|ref|YP_962753.1| histidyl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|146293747|ref|YP_001184171.1| histidyl-tRNA synthetase [Shewanella putrefaciens CN-32]
 gi|166228615|sp|A4Y8T9|SYH_SHEPC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166228617|sp|A1RHQ4|SYH_SHESW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|120558272|gb|ABM24199.1| histidyl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|145565437|gb|ABP76372.1| histidyl-tRNA synthetase [Shewanella putrefaciens CN-32]
 gi|319427121|gb|ADV55195.1| histidyl-tRNA synthetase [Shewanella putrefaciens 200]
          Length = 425

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/422 (13%), Positives = 128/422 (30%), Gaps = 26/422 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        V A++R   +  G  E+  P +++ DL+  S G   D   KEM  
Sbjct: 10  GMNDILPTQSPLWQKVEAVLRSSVSAYGYSEIRTPIVENTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y +   FR E   +    +  +F
Sbjct: 70  FEDRNGDSLTLRPEGTASTVRAGNEHGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQF 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            ++         +      +                 + LG  +         I     H
Sbjct: 129 GVEVYGIGSADIDAEVLMLSARLWEKLGISEHVTLELNTLGDPAERAAYRDALIAFLEQH 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPS-ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +  +  D+           +D   P  +    D    ++ + E+ +  +A   ++ +   
Sbjct: 189 KDKLDEDSQRRMYSNPLRVLDSKDPQVQGILTDAPALMDYLGEESSQHFAQLRELLDAVG 248

Query: 268 FDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                  + V         +F       G++ ++     + G   +       + G    
Sbjct: 249 IQYRVNPRLVRGLDYYNRTVFEWVTNSLGSQGTVLAGGRYDGLVAQLGGKDTPAVGFAMG 308

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVF 380
                ++  +      I            + + A  + C     K+   L        V 
Sbjct: 309 LERIVLLLETLGLTQDIPA-------AVDVYVTAMGENCLVEAIKVAQELRSALPHLKVM 361

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYAS 439
               G  +  Q   AD  G  + +++G + +++  V +KH R    ++ ++   +  + +
Sbjct: 362 SHCGGGNVKKQMKRADKSGASVALLIGEEELAEGMVTVKHLRNDNEQQQVARNALSAFLA 421

Query: 440 HR 441
             
Sbjct: 422 EL 423


>gi|115379768|ref|ZP_01466840.1| histidyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|115363215|gb|EAU62378.1| histidyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 425

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 64/402 (15%), Positives = 114/402 (28%), Gaps = 17/402 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE  +R G  E+  P ++   L+V S     D  GKEM    D+  +++   
Sbjct: 19  WQYVERTARELFSRFGYGEIRTPMVEDTALFVRSVGEETDIVGKEMYTFEDKAQRSLSLR 78

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         +  H  +       +Y +   FR E        R R+F    A ++    
Sbjct: 79  PEGTAPAARAYIEHSVANLEPVTRWYYMGPMFRYERMKTG---RYRQFFQIGAEAYGSRE 135

Query: 168 EGSK----HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                       ++  +       L L S+   A        L        D       C
Sbjct: 136 AAQDVELMDMVVQLLEALGLKEISLNLNSLGDEACRPAFQKKLVEHLTAHRDA--LCADC 193

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV------ 277
            +     P+   +   +   ++                 H   +   L   K        
Sbjct: 194 QRRLEHNPMRVLDCKNEKCQAVARGSPDILQFLCEPCQAHFADVRRKLDALKVRYVINPR 253

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RG++      F    S P   T     G   Y ++     G                 
Sbjct: 254 MVRGLDYYTRTAFEFIASHPALGTASTVGGGGRYDKLVKSLGGPDVPAVGFGLGLDRLTL 313

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           ++            + I   D+  +D    + +RL + G  V +D  G  + SQ   AD 
Sbjct: 314 LLREGGQRYSAPPDVFIAVADEGSQDEAFTLASRLRREGLKVEFDTRGGSLKSQMKRADK 373

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
                 +++G       + ++K    G    ++L E+     
Sbjct: 374 TRARFALVLGEAERQAGRAQLKPMAGGEPLSVALGEIAQAVR 415


>gi|238606802|ref|XP_002396812.1| hypothetical protein MPER_02873 [Moniliophthora perniciosa FA553]
 gi|215470062|gb|EEB97742.1| hypothetical protein MPER_02873 [Moniliophthora perniciosa FA553]
          Length = 222

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 10/136 (7%)

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFK----ISLINIKAHDQV---CRDACEKIYARLS 373
           + R +  ++    D +G++ P  VA  +       I +K  D+       AC+++ A L 
Sbjct: 34  STRTIGVMVMVHGDNQGLVLPPRVASVQVVVVPCGITVKTTDEQRAQINQACDELAATLK 93

Query: 374 KVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVS-DSKVEIKHRLTGIREDMSL 431
           K G     D       G +F   +  G PL++ +G K +     + ++ R TG ++ +SL
Sbjct: 94  KAGIKAKADLRDGYTPGYKFNDWEQKGVPLRLEIGPKDLEGRQTLSVR-RDTGEKKPVSL 152

Query: 432 EEVINYASHRFSNNRP 447
           + + +       + + 
Sbjct: 153 DNIASSIREILDSIQQ 168


>gi|159905128|ref|YP_001548790.1| glycyl-tRNA synthetase [Methanococcus maripaludis C6]
 gi|238686948|sp|A9A885|SYG_METM6 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|159886621|gb|ABX01558.1| glycyl-tRNA synthetase [Methanococcus maripaludis C6]
          Length = 574

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 93/282 (32%), Gaps = 17/282 (6%)

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                 Y            R G       A+              + ++GE      +  
Sbjct: 303 PNEMAHYAADCWDAELYTDRYGWIECVGIAD-----RTNYDLLAHMKNSGEDLSVFVELD 357

Query: 228 MDFPIPSENTDFDDII---SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV 284
            +  I +   + +  +   +     +          D   E+L ++L    + + +    
Sbjct: 358 EEHEIEAYEIELNYKLVGRTFKGDAKVLEESLKELDDKKMEELVEALETEGKYTLKT--C 415

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH----DGKGIIW 340
              F    +Y            G+     +     G  R+   V+E +     D   + +
Sbjct: 416 KRDFELLKEYLTAKKVKKI-VKGEKIIPHVIEPSYGIDRITYCVMEHAFKEEEDRTVMGF 474

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
            ++V+P K+ +  +    +   +    +  +L + G    +DD G  IG ++   D +G 
Sbjct: 475 SNAVSPIKVGVFPLVNK-EGMPEIAMDLKNKLRENGLIAEYDDSGA-IGRRYMRMDEVGT 532

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           P  + +  + + D+ V I+ R +  +  + + EV++Y   + 
Sbjct: 533 PFCITIDGETLVDNSVTIRERDSRAQFRIPINEVVSYIKDKL 574



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 1/109 (0%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G + + PLG    +NV    R+      G  E+  PT+   ++   SG  +++   ++ 
Sbjct: 28  AGFFDYGPLGAILKNNVINTWRKHYIVNEGFYEIDSPTVTPYEVLKASGHVENFTDPLVE 87

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
                +         E V  D     ++  + +         K   E +
Sbjct: 88  CKGCLESFRADHIIEENVDVDTEGKTLQELQEMIEKNNIKCPKCGGEFK 136


>gi|254302703|ref|ZP_04970061.1| histidine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322895|gb|EDK88145.1| histidine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 412

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 58/397 (14%), Positives = 113/397 (28%), Gaps = 18/397 (4%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + ++     G      P  +  +L+        D   KEM    D+ D+++   P +
Sbjct: 24  ISNVTQKMFENYGYKFAKTPIFEETELFKRGIGEATDVVEKEMYTFKDKGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEG 169
              M   +  +    +     FY     FR E        R REF       F + +P  
Sbjct: 84  TASMVRCYLENSIYAKEDISRFYYNGSMFRYERPQAG---RQREFNQIGVEVFGEKSPIL 140

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                   +    ++        I       S  I  +   E    +   +    C    
Sbjct: 141 DAEVIAMGYNWLAKLGVTDLEVKINSVGSKGSRTIYREKLVE-HFKSHLDDMCEDCKDRI 199

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
              P+   +   D                      H E++   L        +  E   +
Sbjct: 200 NRNPLRLLDCKVDGEKDFYKSAPSIIDYLFEDERKHYEEVKKYL---TIFGIKYTEDPTL 256

Query: 288 FYFGTKYSLPMSATFKGADGKDHY-----VQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
                 YS  +        G                    + + A   ++   + ++  D
Sbjct: 257 VRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAFGFAAGVERVMMLVD 316

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
                   +      D    +   KI   L K    V+ D   + + +    AD L    
Sbjct: 317 EYPKDVPDIYIAWLGDSTV-ETAMKIAEDLRKNDIKVYVDYSSKGMKAHMKKADKLETKY 375

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +I+G   ++   V +K   T  ++++ +EE+INY  
Sbjct: 376 CIILGEDELNKGIVLLKDFSTREQKEVKIEEIINYIK 412


>gi|56412599|ref|YP_149674.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197361534|ref|YP_002141170.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81678180|sp|Q5PNI1|SYH_SALPA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558731|sp|B5BAY6|SYH_SALPK RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|56126856|gb|AAV76362.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093010|emb|CAR58443.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 424

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 54/432 (12%), Positives = 114/432 (26%), Gaps = 45/432 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 AEVFGLQGPDIDAELIMLTARWWRALGISEHVSLELNSIGSLEARANYRDALVAFLEQHQ 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D   L   ++  +   +     + +    
Sbjct: 190 ETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPVLGDYLDDDSREHFTGLCKLLDAAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++                   +  I + A     + A   +  RL           
Sbjct: 310 ERLVLLV-------QAVNPEFIASPVVDIYLVAAGAQTQSAAMTLAERL----------- 351

Query: 384 MGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             E  G +             FA AD  G  + +++G   V+D  V +K   +G +  ++
Sbjct: 352 RDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVA 411

Query: 431 LEEVINYASHRF 442
            + V  +     
Sbjct: 412 QDSVAAHLRTLL 423


>gi|19703643|ref|NP_603205.1| histidyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|32130122|sp|Q8RGJ5|SYH_FUSNN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|19713757|gb|AAL94504.1| Histidyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 413

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 60/398 (15%), Positives = 115/398 (28%), Gaps = 19/398 (4%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + ++     G   +  P  +  +L+        D   KEM    DR D+++   P +
Sbjct: 24  ISNVAQKMFENYGYNFVKTPIFEETELFKRGIGEATDVVEKEMYTFKDRGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEG 169
              +   +  +    +     FY     FR E        R REF       F + +P+ 
Sbjct: 84  TASLVRCYLENAIYAKEEISRFYYNGSMFRYERPQAG---RQREFNQIGLEVFGEKSPKV 140

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPM---RAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                   +    ++        I     +A        L   F    D  +    C   
Sbjct: 141 DAEVIAIGYKFLEKLGITDLEVKINSVGSKASRTVYREKLIEHFKSHLD--DMCEDCRDR 198

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
               P+   +   D                      H + +   L        +  E   
Sbjct: 199 INRNPLRLLDCKVDGEKDFYKSAPSIIDYLFEDERKHYDDVKKYL---DIFGIKYTEDPT 255

Query: 287 IFYFGTKYSLPMSATFKGADGKDHY-----VQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +      YS  +        G                    + + AV  ++   + ++  
Sbjct: 256 LVRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAVGFATGVERIMMLL 315

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           +   P     + I    +   +   KI   L      V+ D   + + S    AD L   
Sbjct: 316 EENYPKNTPDVYIAWLGENTSETALKIAESLRDNDIKVYIDYSEKGMKSHMKKADKLETR 375

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             VI+G    +   V +K   T  ++++ +EE+INY  
Sbjct: 376 YCVILGEDEFNKGIVLLKDFSTREQKEIKIEEIINYIK 413


>gi|297620081|ref|YP_003708186.1| glycyl-tRNA synthetase [Methanococcus voltae A3]
 gi|297379058|gb|ADI37213.1| glycyl-tRNA synthetase [Methanococcus voltae A3]
          Length = 584

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 82/282 (29%), Gaps = 11/282 (3%)

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                 Y            R G       A+            +  +    +     ++ 
Sbjct: 308 PNEMAHYASDCWDAELYSDRFGWVECVGVADRTDYDLKSH---MATSGEDLSVFVEYEEP 364

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            +        +F  +        +      +  D    +   S  EN     + I     
Sbjct: 365 KEIETFDIELNFKALGKTFKGDSKIIQKLISEMDYQKIEEMVSGIENNEKGNKYILKAED 424

Query: 288 FYFGTKYSLPMSATFKGA--DGKDHYVQMGSYGIGAMRVVAAVIESSH----DGKGIIWP 341
                  S  ++A       +G+     +     G  R+   VIE +     D   +   
Sbjct: 425 GKEFELTSEYLTAKKITKTVNGEKVIPHVIEPSYGVDRITYFVIEHAFNEEEDRTFMKLA 484

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            SVAP K  +  +    +       +I   L   G    +DD G  IG ++   D +G P
Sbjct: 485 PSVAPIKAGVFPLVNK-EQMPIIAREIEETLRNSGIIAEYDDSGA-IGRRYLRMDEVGTP 542

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             + V  + +    V I+ R    ++ + +EE+  Y ++   
Sbjct: 543 FCITVDGESLDSGTVTIRERDERTQKRLKIEELGEYINNSLK 584



 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G + + PLG    +N+    R+      G  E+  PT+   ++   SG  D++   +++
Sbjct: 34  AGFFDYGPLGAILKNNIVNTWRKHYIINEGFYEIEGPTINPYEVLKASGHVDNFTDPLVQ 93

Query: 96  LADRND 101
             + N+
Sbjct: 94  CKECNE 99


>gi|225175514|ref|ZP_03729508.1| histidyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225168843|gb|EEG77643.1| histidyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 471

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 60/419 (14%), Positives = 129/419 (30%), Gaps = 17/419 (4%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEM 93
           P G +                +RE     G  E+  P  +  +L++   G   D   KEM
Sbjct: 54  PRGTRDILPGDIETWQFFEEKVRELCRLFGYSEIRTPIFEHTELFLRGVGEVTDIVAKEM 113

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
               DR D+++   P     +   +  H       P   Y I   FR +        +  
Sbjct: 114 YTFTDRGDRSLTLRPEGTASVARAYAEHKLYGDAQPIKVYYIGPMFRYDRPQAGRYRQFH 173

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F ++   + + T +    + + +F   L +       +     +      D   E +  
Sbjct: 174 QFGVEVFGTSEPTLDAEVMALSLVFFRSLGLTEFTLEINSVGCPQCRRAYRDKLQEELKE 233

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL---FDS 270
              G     C+  +   P+   +   +    +               D H   +    D+
Sbjct: 234 KVDGLCPD-CADRYDKNPLRILDCKNNKCQDITGDAPLMLGSLCGECDEHFTAVQEAMDA 292

Query: 271 LPENKRVSAR---GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           L E   V+ R   G++      F     +  + +  G  G+   +     G     +  A
Sbjct: 293 LGEQYVVNPRLVRGLDYYTKTAFEIVSPVLGAQSSIGGGGRYDQLLSTIGGPDVPGIGFA 352

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +                    +  + +     V      ++   L   G     D +G  
Sbjct: 353 IGIERVLLALEAAGTLPEAGGVLDVYVATAGAVPAPVALRLAMDLRGAGLAAEKDYLGRS 412

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           + +Q   AD       VI+G + +   +  ++    G ++D++L +++ Y + +    +
Sbjct: 413 LKAQMKYADKKQAKFLVILGDEEMQRGQATVRDMKDGSQQDVALADLVGYLAGQVKEAK 471


>gi|296104193|ref|YP_003614339.1| histidyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058652|gb|ADF63390.1| histidyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 424

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 58/423 (13%), Positives = 125/423 (29%), Gaps = 27/423 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y     FR E   +    +  + 
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRHERPQKGRYRQFNQL 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLA 214
            ++         +         +   L I   + L+ +     E+     D    F+   
Sbjct: 129 GVEVFGLQGPDIDAELIMLTARWWRALGISEHVSLELNSIGSLEARANYRDALVAFLEEH 188

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD----- 269
                +  C +     P+   ++   D+ +L +            S  H   L       
Sbjct: 189 KEKLDED-CKRRMYSNPLRVLDSKNPDVQALLNDAPALGDYLDDESREHFAGLCKLLEAA 247

Query: 270 --------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                    L        R +        G++ ++     + G   +       + G   
Sbjct: 248 GIAYTVNQRLVRGLDYYNRTVFEWVTTSLGSQGTVCAGGRYDGLVEQLGGRAAPAVGFAM 307

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++                   +  I + A     + A  ++  R+     +V  
Sbjct: 308 GLERLVLLV-------QAVNPEFKADSVVDIYLVASGAETQSAAMQLAERVRDALPEVKL 360

Query: 382 --DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             +  G     QFA AD  G  + +++G   V++ +V +K   +G +  ++ + V  +  
Sbjct: 361 MTNHGGGNFKKQFARADKWGASIALVLGESEVANGEVVVKDLRSGEQTTVTQDGVAAHLR 420

Query: 440 HRF 442
              
Sbjct: 421 TLL 423


>gi|218258680|ref|ZP_03475001.1| hypothetical protein PRABACTJOHN_00656 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225305|gb|EEC97955.1| hypothetical protein PRABACTJOHN_00656 [Parabacteroides johnsonii
           DSM 18315]
          Length = 514

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 85/253 (33%), Gaps = 16/253 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       GE   +  +         +     +        E+  A YA  
Sbjct: 259 FRMREFEQMEMQFFVRPGEEMEWFKQWKATRLKWHQAMGLGNEKYRYHDHEKL-AHYANA 317

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     ++     E + + +R            K+S      F     + +   +    I
Sbjct: 318 ATDIEFEMPFGFKEVEGIHSRTNFDLSQHE---KFSGKKVQYFDPELNQSYTPYVIETSI 374

Query: 320 GAMR---------VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R              +ES      +  P ++AP K++++ +   D    +  E+I  
Sbjct: 375 GVDRVFLSVMAGSYCEETLESGETRVVLKLPAALAPIKLAVLPLVKKD-GLPEKAEEIMK 433

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L        +D+    IG ++   D +G P  + V    + D+ V I+ R T  +E +S
Sbjct: 434 MLR-FDFRCQYDEKD-SIGKRYRRQDAIGTPYCITVDHDTLKDNCVTIRFRDTMEQERVS 491

Query: 431 LEEVINYASHRFS 443
           ++++ +  S + S
Sbjct: 492 IDKLHDIISEKVS 504


>gi|157144552|ref|YP_001451871.1| histidyl-tRNA synthetase [Citrobacter koseri ATCC BAA-895]
 gi|157081757|gb|ABV11435.1| hypothetical protein CKO_00272 [Citrobacter koseri ATCC BAA-895]
          Length = 414

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/431 (12%), Positives = 118/431 (27%), Gaps = 49/431 (11%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLAD 98
            +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM    D
Sbjct: 3   DYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFED 62

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           RN  ++   P            H   Y      +Y     FR E   +    +  +  ++
Sbjct: 63  RNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRHERPQKGRYRQFHQLGVE 121

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTG 217
                    +         +   L I   + L+ +     ++     D    ++      
Sbjct: 122 AFGLQGPDIDAELILLTARWWRALGIAEHVNLELNSIGSLDARANYRDALVAYLEQHKEK 181

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD-------- 269
             +  C +     P+   ++   D+ +L +            S  H   L          
Sbjct: 182 LDED-CKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHFAGLCKLLEAAGIA 240

Query: 270 -----SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                 L        R +        G++ ++     + G   +       + G      
Sbjct: 241 YTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLE 300

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              ++                   +  I + A     + A   +  RL            
Sbjct: 301 RLVLLV-------QAVNLEFNADPVVDIYLVASGADTQSAAMTLAERL-----------R 342

Query: 385 GEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            E  G +             FA AD  G  + +++G   V+D  V +K   +G +  ++ 
Sbjct: 343 DENPGVKLMTNHGGGNFKKQFARADKWGARVALVLGESEVADGTVVVKDLRSGEQTAVAQ 402

Query: 432 EEVINYASHRF 442
           + V  +     
Sbjct: 403 DSVTAHLRTLL 413


>gi|242398937|ref|YP_002994361.1| Glycyl-tRNA synthetase [Thermococcus sibiricus MM 739]
 gi|259511937|sp|C6A317|SYG_THESM RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|242265330|gb|ACS90012.1| Glycyl-tRNA synthetase [Thermococcus sibiricus MM 739]
          Length = 570

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 66/428 (15%), Positives = 135/428 (31%), Gaps = 73/428 (17%)

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           Y +   E      ++ K  +   T + +  +  R +  +   LPF  +QI   +R+E+ P
Sbjct: 143 YFNLMFETYIGPYKDKKGYLRPETAQGIFVNFKRLNNFARNQLPFGVFQIGKAYRNEISP 202

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH------------------- 186
           R G++R REF   +   F    +     + ++    LR +                    
Sbjct: 203 RQGMLRLREFSQAEVEIFFDPKQKEHPHFEEVKDEVLRFYPIENQLKNLGMIELTLDEAV 262

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADT-------GETQVFCSKDFMDFPIPSENTDF 239
           + G       A    +   +  +  + A+         E +   S D  D  I SE   +
Sbjct: 263 KKGYVMNTFFAYYMAMVKRILLDIGIPANKIRFRQQLPEERAHYSSDTWDVEIHSERFGW 322

Query: 240 DDIISLNS--------IVEQWTAPYAATSDVHNEKLFDSLP------------------- 272
            + + +           V++  A           K+   L                    
Sbjct: 323 IECVGIAYRGNYDLSRHVKESGADLTVMIHYKEPKIIKKLKISLNMKRVGPKLKGDAKRI 382

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA-------------DGKDHYVQMGSYGI 319
             K       E+  IF    K        ++                G+     +     
Sbjct: 383 NQKLQEMTQEELKKIFEGLEKIGKVFLDGYELEKEDFIIKEVEEKVHGEKLVPHVLEPSF 442

Query: 320 GAMRVVA-----AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G  R        +++        +     +AP +++++ + A  +       +I+  L K
Sbjct: 443 GIDRPFYLLLENSIVMDEDSRVYLKIKKDMAPIEVAVLPLVAK-EPLTSIAYEIFRTLQK 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V +D+    +G ++A  D +G P  V + ++   D+ V I+ R T  +  + +EE+
Sbjct: 502 EGFIVVYDEKD-TVGRRYARYDEIGTPYCVTIDNQTPEDNTVTIRDRDTREQIRVKIEEL 560

Query: 435 INYASHRF 442
                   
Sbjct: 561 PEKLRELI 568



 Score = 47.4 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 9/125 (7%)

Query: 23  HKLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             LM R G       I+  ++G Y + PLG      +   IRE   R G  E+  P +  
Sbjct: 12  QDLMRRRGFVWSSFEIYGGARGFYDYGPLGAIIKRKIEKKIREAFIREGFFEIETPDITP 71

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            ++++ SG  D +   +    +       +   H         +   S  +L     +  
Sbjct: 72  EEVFIASGHVDKFVDPL---TECKKCGSRFRADHIVEEVLGIDTEGLSAEHLTQLIREHD 128

Query: 137 LKFRD 141
           +K  +
Sbjct: 129 IKCPE 133


>gi|209919991|ref|YP_002294075.1| histidyl-tRNA synthetase [Escherichia coli SE11]
 gi|293446867|ref|ZP_06663289.1| histidyl-tRNA synthetase [Escherichia coli B088]
 gi|331669260|ref|ZP_08370108.1| histidine--tRNA ligase [Escherichia coli TA271]
 gi|229558664|sp|B6I586|SYH_ECOSE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|209913250|dbj|BAG78324.1| histidyl-tRNA synthase [Escherichia coli SE11]
 gi|291323697|gb|EFE63125.1| histidyl-tRNA synthetase [Escherichia coli B088]
 gi|323944736|gb|EGB40803.1| histidyl-tRNA synthetase [Escherichia coli H120]
 gi|324020074|gb|EGB89293.1| histidyl-tRNA synthetase [Escherichia coli MS 117-3]
 gi|331064454|gb|EGI36365.1| histidine--tRNA ligase [Escherichia coli TA271]
          Length = 424

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 61/426 (14%), Positives = 119/426 (27%), Gaps = 33/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRHERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNK----MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                  F L                + +     H     +     E+     D    F+
Sbjct: 126 HQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFL 185

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD-- 269
                   +  C +     P+   ++   ++ +L +            S  H   L    
Sbjct: 186 EQYKDKLDED-CKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLL 244

Query: 270 -----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                       L        R +        G++ ++     + G   +       + G
Sbjct: 245 ESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVG 304

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--G 376
                    ++                   +  I + A     + A   +  RL     G
Sbjct: 305 FAMGLERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPG 357

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             +  +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  
Sbjct: 358 VKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAA 417

Query: 437 YASHRF 442
           +     
Sbjct: 418 HLRTLL 423


>gi|186701898|ref|ZP_02971551.1| glycyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|186701208|gb|EDU19490.1| glycyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 473

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/434 (11%), Positives = 125/434 (28%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG    +N+  +  +E    +   + +    + +  +W  SG  D++   ++   
Sbjct: 35  WDYGPLGVLLKNNLKNLWWKEFVTKQKNIVGLDSAIILNPLVWKASGHLDNFSDPLIDCK 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
                        E    DI  +   +           ++      +  +  +R    + 
Sbjct: 95  SC-KTRYRADKLIESFNKDIHIAENSTNEEFMKVLNDHKIFCPTCKQFNWTDIRHFNLMF 153

Query: 158 KDAYSFDLTPEG---------------SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           K        P+                 K+    M +       ++G            I
Sbjct: 154 KTHQGVIEDPKNIVYLRPETAQGIFVNFKNVQRSMRLHLPFGIAQIGKSFRNEITPGNFI 213

Query: 203 GGDLSHEFIV--LADTGETQVFCSKDFMDFPIPSENTDF----DDIISLNSIVEQWTAPY 256
                 E +        ET       +++       T      +++       E+ +  Y
Sbjct: 214 FRTREFEQMEIEFFLKEETAYDVFDKYLNQIQNWLVTCCGLDLNNLRKHEHPREELS-HY 272

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           +  +            E   ++ R      +       S      F     + +   +  
Sbjct: 273 SKKTIDFEYNFLHGFSELYGIAYRTNYDLSVH---MNLSKKDLTYFDEETKQKYIPHVIE 329

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSV------APFKISLINIKAHDQVCRDACEKIYA 370
             +G  R++ A++  +   + +   +               I +       ++  E +Y 
Sbjct: 330 PSVGVERLLYAILTEATFIEKLANDEERILMNLKYDLAPYKIAVMPLVNKLKEKAEAVYN 389

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK---FVSDSKVEIKHRLTGIRE 427
           ++  +   V +D+ G  IG ++   D +G    + +         D    I+ R T  ++
Sbjct: 390 KILDLNISVTFDNSG-SIGKRYRRQDAIGTIYCITIDYDSFGDEHDPTFTIRERNTMAQK 448

Query: 428 DMSLEEVINYASHR 441
            + L E+  Y S +
Sbjct: 449 RIKLSELSLYLSQK 462


>gi|269140144|ref|YP_003296845.1| histidyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|267985805|gb|ACY85634.1| histidyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|304559978|gb|ADM42642.1| Histidyl-tRNA synthetase [Edwardsiella tarda FL6-60]
          Length = 424

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 53/421 (12%), Positives = 121/421 (28%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        + A +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTALWQPIEAALKQVLASYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + K+           + +G            +     ++
Sbjct: 130 AEVFGLAGPDIDAEIIMMTARWWKVLGIADHVALELNSIGSLEARAAYRDALVAYLEQYK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-----EQWTAPYAATSDVHN 264
             +  D            +D   P      ++   L+  +     E +        D   
Sbjct: 190 NQLDEDCQRRMYSNPLRVLDSKNPQVQALLNEAPRLSEYLDADSREHFDGLCRLLDDAGI 249

Query: 265 E-KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              + + L        R +        G + ++     + G   +       + G     
Sbjct: 250 AYTVNERLVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDGLVAQLGGHATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                P +   + + A  +  + A  ++  +L        +  
Sbjct: 310 ERLVLLV-------QAVNPDFLPQRAVEVYLIAAGEGTQSAAMRLAEQLRDALPQLRLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + +++G   V + +V +K   +G ++ ++ ++     +  
Sbjct: 363 NYGGGNFKKQFARADKWGARIALVLGESEVQNGQVNVKCLASGEQQTVAQDQAATLLATL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|261345333|ref|ZP_05972977.1| histidine--tRNA ligase [Providencia rustigianii DSM 4541]
 gi|282566374|gb|EFB71909.1| histidine--tRNA ligase [Providencia rustigianii DSM 4541]
          Length = 420

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 66/418 (15%), Positives = 125/418 (29%), Gaps = 40/418 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP   +    + A ++      G  E+  P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTRVWQKIEATLKNILQGYGFSEIRTPIVEQTPLFRRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN++++   P +          H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FNDRNEESLTLRPENTAGCVRAGIEHGLLYNQEQRLWYL-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKH----SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
               A  F L              + + +     H     +     E+     D    F+
Sbjct: 126 HQLGAEVFGLAGPDIDAEVILMTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFL 185

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---------NSIVEQWTAPYAATSDV 262
                   +  C +     P+   ++   D+ +L             E           +
Sbjct: 186 EQHKDKLDED-CKRRMYSNPLRVLDSKNKDVQALLNDAPALFDYLDDESREHFDGLCKLL 244

Query: 263 HNE----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
            N     ++   L        R +        G++ ++     + G    +      +  
Sbjct: 245 DNAGIQYRVNQRLVRGLDYYNRTVFEWVTTALGSQGTVCAGGRYDGLV--EQLGGRATPA 302

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL------ 372
           +G    +  ++    +       D+               Q      EK+   L      
Sbjct: 303 VGFAMGMERMVLLVQEVNPEFTADNSVADVYLASFGDNSQQAALLVAEKVRDALPTLRLM 362

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  G        G     Q A AD  G  L +I+G   + +S+V +K   TG +E +S
Sbjct: 363 TNHG--------GGNFKKQLARADKQGAKLALILGEDEIQNSQVTLKDLRTGTQETIS 412


>gi|283852907|ref|ZP_06370168.1| histidyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
 gi|283571736|gb|EFC19735.1| histidyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
          Length = 421

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 65/433 (15%), Positives = 125/433 (28%), Gaps = 35/433 (8%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSY 89
           I +  KG     P        +    R+  +R G  E+ VP L+  +L+  S     D  
Sbjct: 4   IQKI-KGFADLFPPDSTVFAFIEQTARDVFSRYGYRELRVPVLERTELFSRSIGEETDVV 62

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            KEM    DR  +++   P     +        ++   L   F+     FR E   +   
Sbjct: 63  QKEMYTFPDRKGRSLTLRPEATAGVMRALIEDKRAGEGL-AKFFAYGPMFRYERPQKG-- 119

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL----------GLKSIPMRAES 199
            R R+F   D  +              M   YLR                 +  P+  + 
Sbjct: 120 -RMRQFHQIDVEAVGSPEPLLDAEVLLMLDQYLRALGLSELTVELNSLGCRECRPVFLDV 178

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAA 258
                   H+  +  D    ++      +D  +P       D   + + +       +AA
Sbjct: 179 LREFLKGMHKEKLCDDCMRRKLTNPLRVLDCKVPQCKEFTADAPRITDHLCPDCAEHFAA 238

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIF-----YFGTKYSLPMSATFKGADGKDHYVQ 313
              + +    D     + V      V   F       G++ S+     + G         
Sbjct: 239 VRRILDAAGLDYTLNPRLVRGLDYYVRTTFEIVSGNIGSQSSVAGGGRYDGLVASLGGAD 298

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +   G        A++                        +   D    D    +   L 
Sbjct: 299 VPGVGFACGMERLALLIGGVTE------------AAPDFVLVVLDPAGLDRGLLLAQDLR 346

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G         + + SQ   AD  G    +++G+  ++   V +K+   G +E +  + 
Sbjct: 347 RAGFAGEAPFAAKSVKSQMRAADKSGASFCLVLGADELAQGTVVVKNMRAGGQETVGQDL 406

Query: 434 VINYASHRFSNNR 446
           +  +   R    +
Sbjct: 407 LPAFLRARLEEAQ 419


>gi|168821504|ref|ZP_02833504.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205341920|gb|EDZ28684.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320087017|emb|CBY96786.1| Histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 424

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 56/432 (12%), Positives = 116/432 (26%), Gaps = 45/432 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 AEVFGLQGPDIDAELIMLTARWWRALGIADHVSLELNSIGSLEARANYRDALVAFLEQHQ 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   ++  +   +A    + +    
Sbjct: 190 ETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHFAGLCKLLDAAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++                   +  I + A     + A   +  RL           
Sbjct: 310 ERLVLLV-------QAVNPEFIASPVVDIYLVAAGAQTQSAAMTLAERL----------- 351

Query: 384 MGEQIG-------------SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             E  G              QFA AD  G  + +++G   V+D  V +K   +G +  ++
Sbjct: 352 RDEMPGGKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVA 411

Query: 431 LEEVINYASHRF 442
            + V  +     
Sbjct: 412 QDSVAAHLRTLL 423


>gi|15679834|ref|NP_276952.1| glycyl-tRNA synthetase [Methanothermobacter thermautotrophicus str.
           Delta H]
 gi|3334352|sp|O27874|SYG_METTH RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|2622981|gb|AAB86312.1| glycyl-tRNA synthetase [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 565

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 85/275 (30%), Gaps = 17/275 (6%)

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
              Y              G   I   A+                 +GE      +     
Sbjct: 302 MAHYAIDCWDVEAFTDSYGWIEIIGIAD-----RTDYDLRSHSQHSGEDLRVFIEYDEPR 356

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            I       D         +      +A S+V  E++  +L E  R     I  G     
Sbjct: 357 RIRKRAVKPDMGKLGPKFRKDAARIASALSEVDVEEIEKALDEEGRF----ILEGEFEIL 412

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA----AVIESSHDGKGIIWPDSVAP 346
               S           G+  Y  +     G  R++       +    +      P  VAP
Sbjct: 413 PDDVSFEDVEEVV--TGRKVYPHVIEPSFGIDRIIYTLLLHSLVDDGERTYFRLPPHVAP 470

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            +++++ +   +++      +I   L + G    +D  G  IG ++A AD +G P  V V
Sbjct: 471 VEVTVLPLVNREEMVM-TALEIERNLRRSGFIAEFDSSG-TIGRRYARADEIGVPFAVTV 528

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             + + D  V +++R    +  + +EE++      
Sbjct: 529 DHETLEDGTVTLRNRDDCSQVRVKIEELVPTLEKL 563



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 18  AEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQS 76
           A       +  +  I+    G   + PLG    + +    RE    R G  E+  PT+  
Sbjct: 13  ARKRG--FLWSSFEIYSGVAGFVDYGPLGATLKNKIMNRWREFYVVREGFYEIESPTIMP 70

Query: 77  ADLWVESGRYDSYGKEMLRLADRND 101
            +    SG  D +   M +  +  D
Sbjct: 71  EEALKASGHVDHFNDPMTQCKECMD 95


>gi|262118515|pdb|3A31|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase
           Thrrs-1 From Aeropyrum Pernix (Selenomethionine
           Derivative)
          Length = 471

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 51/351 (14%), Positives = 101/351 (28%), Gaps = 21/351 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G+  +   G      +  ++ +   R G   +  P + S +L+  SG  + + +    
Sbjct: 38  GAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIE-FYRNNXY 96

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSH---IKSYRNLPFTFYQIQLKFRDELRPR-FGVMR 151
           L D         P +      +F +     +S   LPF  ++     R E     +G++R
Sbjct: 97  LFDIEGHEFAVKPXNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLR 156

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVS--YLRIFHRLGLKSIPMRAESGPIGGDLS-H 208
            R F   DA+            Y+        L    +LG+ S   +         L   
Sbjct: 157 VRGFTQDDAHIIVPGGRVIDVVYDVFEEXKLVLERLFKLGVSSETFKVRLSXSDKSLIGK 216

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           EF    +  E          +    + +   +        +E   A Y    D       
Sbjct: 217 EFXGSKEEWEGA-------EEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIXXVEE 269

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             + +  +      +    F    ++ L      +   G +    +    +G++     V
Sbjct: 270 SGVSKEWQXGTIQFD----FNLPRRFRLYDV--VREEFGIEEVYIIHRALLGSIERFLGV 323

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                 G+       +    I++      D+   D    I   L   G  V
Sbjct: 324 YLEHRRGRXPFTLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRV 374


>gi|330723868|gb|AEC46238.1| prolyl-tRNA synthetase [Mycoplasma hyorhinis MCLD]
          Length = 480

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 80/177 (45%), Gaps = 6/177 (3%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   Y    +S      FK    +       S+G+ + R++  +I + 
Sbjct: 215 EAMMKDGKALQSGTSHYLAQNFSKSFDIVFKNDKNEFENPYQTSWGV-STRLIGGLIMTH 273

Query: 333 HDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            D +G+I P  +AP ++ ++ +    + +     ++I+ +L  +   +  D    Q G +
Sbjct: 274 GDDRGVILPPKIAPIQVDILELFAIKNPIVSIVAKQIFEKLK-IKFTLRIDSTDNQPGYK 332

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---INYASHRFSNN 445
            + +++LG PL++ VG + +  ++V I  R T  +  + +E+V   + +      NN
Sbjct: 333 ASRSEVLGTPLRIEVGPRDLEKNQVAIVRRDTLEKHQVEVEKVFEKVEFLLEEIQNN 389



 Score = 59.4 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 6/154 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G   + P      + +   + +   R     +  P L     +  E    + +  E+L +
Sbjct: 35  GTIYFKPNSFALWEKIQENLNKYFKRENVKNVYFPLLIPQSFITKEKSHVEGFAPELLTI 94

Query: 97  ADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               +K     +   PT E +  D F+  + +   LP  + Q     R E +     +R+
Sbjct: 95  THAGEKKLSEELYVRPTSEVLFADCFKKELANNNQLPLIYNQWTSVLRWE-KNTNPFLRT 153

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            EFL ++ ++     E +K    KM   Y     
Sbjct: 154 TEFLWQEGHTVHSNAEEAKRLAKKMIGIYKDFIE 187


>gi|162452821|ref|YP_001615188.1| hypothetical protein sce4545 [Sorangium cellulosum 'So ce 56']
 gi|229558733|sp|A9F907|SYH_SORC5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|161163403|emb|CAN94708.1| hisS [Sorangium cellulosum 'So ce 56']
          Length = 428

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 61/414 (14%), Positives = 112/414 (27%), Gaps = 16/414 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW--VESGRYDSYGKEMLR 95
           G+   LP   +    +    R      G  E+  P L+  +L+        D   KEM  
Sbjct: 8   GMNDILPEEVERWHKLEGAFRLHAELHGYAEVRTPLLEPTELFRHQMGETTDVVEKEMYS 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             +R+   +   P         +  H    +     +Y +   FR E   +    R R+F
Sbjct: 68  F-ERHGDHLTVRPEGTAGAARAYVEHAVHAKEPVTRWYYLGPMFRGERPAKG---RYRQF 123

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                  F             +   +L+               S           +    
Sbjct: 124 YQAGCELFGDPGPLCDAETIDLVAGFLQRIGVGEFVVHVNSLGSAGTRERYREALLAHYT 183

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             + ++           P      D     +  V +         D  +   +D +    
Sbjct: 184 PRKAELSEDSQRRLEKNP--LRILDSKDQRDHEVSRDAPSILDLLDDADRAHWDGVRRCL 241

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK--------DHYVQMGSYGIGAMRVVAA 327
            V      V      G  Y        K   G                         V A
Sbjct: 242 DVLGVNYVVDRSLVRGLDYYTRTLFEVKATAGDLGAQSTLAGGGRYDAMVAGLGGPSVPA 301

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +  +    + +      +P +     +    Q   D    +  +L  +G  V  D  G +
Sbjct: 302 IGFAMGMERLLTMMPGASPRRRPGCFLAPLGQSGADQALVLAKQLRALGVPVELDGRGGR 361

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           + +    AD LG  L VI+G   +    ++IK  +  ++E++ LE      + R
Sbjct: 362 LKAMLRRADSLGARLCVILGDAEIERGVLQIKDLVAHVQEEIPLEGAARVLADR 415


>gi|77164419|ref|YP_342944.1| histidyl-tRNA synthetase, class IIA [Nitrosococcus oceani ATCC
           19707]
 gi|254433972|ref|ZP_05047480.1| histidyl-tRNA synthetase [Nitrosococcus oceani AFC27]
 gi|76882733|gb|ABA57414.1| histidyl-tRNA synthetase [Nitrosococcus oceani ATCC 19707]
 gi|207090305|gb|EDZ67576.1| histidyl-tRNA synthetase [Nitrosococcus oceani AFC27]
          Length = 423

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 67/429 (15%), Positives = 124/429 (28%), Gaps = 36/429 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        V  ++       G  E+ +P L+  +L+  S G   D   KEM  
Sbjct: 9   GMNDLLPNQTPHWQRVEEVLSRVLASYGYQEIRLPLLEPTELFRRSIGEVTDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H       P   +     FR E   +    R R+F
Sbjct: 69  FIDRNGDSLTLRPEGTAGCVRSILQHGL-LTQGPLRLWYYGPMFRHERPQKG---RYRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
                               ++ +   R + RLGL+ + ++  S   P       E +V 
Sbjct: 125 YQIGVEVLGTKGPDVDA---ELILMTARFWRRLGLQDLRLQLNSLGSPAARIAYRERLVD 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ----------------WTAPYA 257
             T    V                      +L  I+EQ                    + 
Sbjct: 182 FFTAHEDVLDEDSRRRLHSNPLRILDSKNPALQEIIEQAPQLLDYLDDDSRTHFEALRHT 241

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             S     K+   L        R +        G++ ++     + G   +     + + 
Sbjct: 242 LDSADIAYKINPRLVRGLDYYTRTVFEWVSDQLGSQGTVCAGGRYDGLVEQLGGQSIPAV 301

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
           G          +             +  P  + L+ +    +       E++   +    
Sbjct: 302 GFALGLDRLVALL-----GEQGRLKAPIPADLYLVAVGPQAERESLLFAERLREAIPAAR 356

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVI 435
             V +   G    SQ   AD  G    +I+G   +    V +K    G  +E +S +++ 
Sbjct: 357 LQVNY--GGGSFKSQLKRADRSGARWALILGEDEIVQGTVSVKDLRQGQPQELVSQDKLS 414

Query: 436 NYASHRFSN 444
           +Y   +  +
Sbjct: 415 DYIKQQLQS 423


>gi|260771395|ref|ZP_05880320.1| histidyl-tRNA synthetase [Vibrio furnissii CIP 102972]
 gi|260613521|gb|EEX38715.1| histidyl-tRNA synthetase [Vibrio furnissii CIP 102972]
 gi|315180975|gb|ADT87889.1| histidyl-tRNA synthetase [Vibrio furnissii NCTC 11218]
          Length = 398

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 62/402 (15%), Positives = 121/402 (30%), Gaps = 16/402 (3%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYGPTH 110
           +  I++   +  G  E+ +P ++   L+  + G   D   KEM    DRN  ++   P  
Sbjct: 1   MEGIVKNVISAYGYNEVRMPIVEMTHLFSRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEG 60

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLT 166
                     +   Y      +Y +   FR E       R       E    D    D  
Sbjct: 61  TAGCVRSGIENGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQCGVEVFGIDGPDVDAE 119

Query: 167 PEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                    +            + +G         +  I     ++ ++  D        
Sbjct: 120 LIMMTARLWRELGIADYVRLELNSIGSLEARANYRTALIEYLEQYQDVLDEDCKRRMYTN 179

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSLPENKRVSARGI 282
               +D   P       D   L+  ++  +   +A   ++ +    +     + V     
Sbjct: 180 PLRVLDTKNPDVQAVLGDAPKLSDYLDTESKQHFAGLCELLDAAGIEYTINERLVRGLDY 239

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
               +F      SL    T  G  G  +   +   G  A   V   +        +    
Sbjct: 240 YNRTVFE-WMTDSLGAQGTVCG--GGRYDGLVEQLGGKATPAVGFAMGLERLVLMMETLG 296

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGF 400
           +    +   + +    +    A  K+  +L +   G  V     G     QF  AD +G 
Sbjct: 297 NTDVRRNVDVYMVTAGEGTLTAGMKLAEQLREQIPGLRVMTHFGGGNFKKQFKRADKVGA 356

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + +++G   V++  V +K    G +E +S  EV +  +H  
Sbjct: 357 AVALVLGENEVAEHTVVLKDLAGGEQETISQTEVASKLAHLV 398


>gi|6434818|gb|AAF08322.1|U31860_1 threonyl-tRNA synthetase [Streptococcus pyogenes]
          Length = 70

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 17 DAEIASHKLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
          D      +L L   MI  +  +G+  WLP G      +   I +++  +G   +  P L 
Sbjct: 1  DHRKLGKELDLF--MISQEVGQGLPFWLPDGATIRRTLERYITDKELASGYQHVYTPPLA 58

Query: 76 SADLWVESGRYD 87
          S +L+  SG +D
Sbjct: 59 SVELYKTSGHWD 70


>gi|332992290|gb|AEF02345.1| histidyl-tRNA synthetase [Alteromonas sp. SN2]
          Length = 426

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 51/412 (12%), Positives = 118/412 (28%), Gaps = 26/412 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYG 107
              V +++R+     G  E+  P ++S DL+  S G   D   KEM    DRN  ++   
Sbjct: 22  WQKVESVLRQVVASYGYQEIRTPIVESTDLFKRSIGEVTDIVEKEMYTFEDRNGDSLTLR 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT- 166
           P            H   Y       + +   FR E   +    +  +F ++         
Sbjct: 82  PEGTASTVRAGNEHGLLYNQ-QQRLWYMGPMFRHERPQKGRYRQFHQFGVETYGLDGPDI 140

Query: 167 ------------PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                              +  + ++ L            + +        L  E +   
Sbjct: 141 DLEVILLSARLWKAFGIEKHVTLQINSLGSNEARQAYRETLISYLKERADKLDEESLRRL 200

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           ++   +V  SK+       ++     D +   S     +     T    + ++   L   
Sbjct: 201 ESNPLRVLDSKNPNVQAAIADAPSLLDHLDEESKTHFDSLCERLTQAGISFEINPRLVRG 260

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                R +        G++ ++     + G   +       + G         ++     
Sbjct: 261 LDYYNRTVFEWVTESLGSQGTVCAGGRYDGLVEQLGGKATPAVGFAMGMERLVLLL---- 316

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGSQF 392
                  +       + + + A     +    ++   L        V     G     Q 
Sbjct: 317 ---TTLSEDALDTSSADVYVTAMGDDAQAYALEVSEHLRDTLPNVRVMMHCGGGNFKKQL 373

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHRFS 443
             AD  G    +++GS+ +   +V +K  R    ++ ++   + +  +   +
Sbjct: 374 KRADKTGARFALLLGSQEMQSREVAVKPLRDGQEQQTIAFNALSSTIADLLN 425


>gi|124006194|ref|ZP_01691029.1| glycyl-tRNA synthetase [Microscilla marina ATCC 23134]
 gi|123988118|gb|EAY27776.1| glycyl-tRNA synthetase [Microscilla marina ATCC 23134]
          Length = 500

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 69/488 (14%), Positives = 141/488 (28%), Gaps = 78/488 (15%)

Query: 20  IASHKLMLRTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNRTGAIEM---S 70
           I SH      G I   S    G+   Y +   G +   N+  +  +   +     +    
Sbjct: 18  IISHAKE--YGFIFPSSEIYGGLQAVYDYGSNGAELKKNLKEVWWKAMTQFN-QNVVGID 74

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKA----MIYGPTHEEVMTDIFRSHIKSYR 126
                    W  SG  DS+   M+   D N +     ++    +E              +
Sbjct: 75  AAIFMHPTTWKASGHVDSFSDPMVDNKDSNKRYRVDVLLEDKANEYRKAGDTAKAGALEQ 134

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFL-----------MKDAYSFDLTPEGSKHS-- 173
            L        +    EL    G+  +               M       +  E +K    
Sbjct: 135 ELGRLMDVEDMDGLRELLISEGIKCAISGTDNWTEVRQFNLMFSTEIGSVADESNKIYLR 194

Query: 174 --------------YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA---DT 216
                                      ++G            +      E + +      
Sbjct: 195 PETAQGIFVNFMNVQKTSRQQIPFGIAQIGKAFRNEIVARQFVFRMREFEQMEMQYFVRP 254

Query: 217 GETQVFC-------SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           GE   +         K      +P+E   + D I L        A YA  +     +   
Sbjct: 255 GEEMQWYDHWKETRMKFLQAIGLPAEKLRYHDHIKL--------AHYANAAADIEFEFPI 306

Query: 270 SLPENKRVSARG-IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
              E + + +R   ++     F       +  T +  D + +   +    IG  R+  AV
Sbjct: 307 GFKELEGIHSRTDFDLSKHAEFSKTKIQYVDDTIEDKDKRKYIPYVVETSIGLDRLFLAV 366

Query: 329 IESS-------------HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           + +S                  +    ++AP K+++  +   D    +  + I+  L   
Sbjct: 367 LSNSLTTAEGIDAKGNAKTRTFLKIHPALAPNKVAVFPLLRKD-GLPEIAKGIFNDLR-H 424

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                +++ G  IG  +   D++G P  + V  +   D+ V ++ R T  ++ + +E++ 
Sbjct: 425 DFKTIYEERGA-IGKLYTRQDMIGTPFCITVDHQTKEDNTVTVRERDTTEQKRVKIEDLH 483

Query: 436 NYASHRFS 443
              +   S
Sbjct: 484 AMINKEVS 491


>gi|68062614|ref|XP_673315.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56491080|emb|CAH97018.1| hypothetical protein PB000003.02.0 [Plasmodium berghei]
          Length = 279

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 54/146 (36%), Gaps = 9/146 (6%)

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---------HDQ 359
           +    +     G  R++  ++E S   +          +     +I           +++
Sbjct: 116 NFIPNVIEPSFGIGRLIFCILEHSFRVRQFTDDKEERNYLSLPYSISPIKCSVLSISNNK 175

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L++       D+    IG ++A  D +G P  V +  + + D  V ++
Sbjct: 176 EFYPYIKQIQTILNEHNISCKLDNSSVSIGKKYARTDEIGIPFAVTIDFQTLKDKTVTLR 235

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R + ++  +++ EV +  +   S  
Sbjct: 236 DRDSMVQIRVNISEVSDIINSLLSQK 261


>gi|170760205|ref|YP_001788375.1| histidyl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|229558649|sp|B1L097|SYH_CLOBM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|169407194|gb|ACA55605.1| histidine--tRNA ligase [Clostridium botulinum A3 str. Loch Maree]
          Length = 415

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 56/397 (14%), Positives = 107/397 (26%), Gaps = 11/397 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    R      G  E+  P  +  +L+        D   KEM    D+  +++   
Sbjct: 20  WQYLENKFRNIAADFGCREIRTPVFEYTELFQRGVGETTDVVQKEMYTFEDKAGRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F          P   Y      R E   +    R R+        F    
Sbjct: 80  PEGTSPAVRAFVEGRLFNETQPTKMYYFTPVMRYENVQKG---RLRQHHQFGIEIFGAKD 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                    + V   +     G++         P      +E +    +      CS   
Sbjct: 137 ASVDAEVISIPVGIYKELGVEGVELNINSIGC-PKCRKTYNEALKKYLSKNYDKLCSTCK 195

Query: 228 MDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEKLFDSLP--ENKRVSARGI 282
             F           + +   IV+               H E L   L   + K      I
Sbjct: 196 TRFDKNPLRILDCKVDTCKEIVKDAPIILDYICDECRDHFEALKSYLDVLDIKYKVDPFI 255

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
             G  +Y  T +   +      A G+  Y+     G     V   +              
Sbjct: 256 VRGLDYYSKTVFEFIIDDITICAGGRYDYLIEEIGGPSMPAVGFGMGIERLLLTLQEKAI 315

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            +       + +       +    K+   L         D MG+ + +Q   A+ +G   
Sbjct: 316 EIPEEAYVDLYLGNMGDKAKLEVLKLAKELRDRHIKCEIDHMGKSVKAQMKYANKIGAKY 375

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +++G + ++  KV +K    G + ++ ++E+     
Sbjct: 376 SMVLGEEELNTGKVALKRMEDGQQIEVDIKEIDTLIK 412


>gi|73670890|ref|YP_306905.1| histidyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
 gi|72398052|gb|AAZ72325.1| histidyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
          Length = 409

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 134/414 (32%), Gaps = 26/414 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   +LP        V +++R+   + G  E+  PT +  DL+  +SG  +    E+   
Sbjct: 8   GTRDFLPADTARRRYVESVMRDVARKWGYSEIITPTFEHLDLFTLKSG--EGIIGELYNF 65

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + M   P     +  ++ + ++ +   P   +  +  FR E   +    R REF 
Sbjct: 66  TDKGGREMTLRPELTAPVMRLYINELQPFPK-PLKLFYFENCFRYERPQKG---RFREFW 121

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF----IV 212
                        S      +  + L+     G   +   A    +   L  E     + 
Sbjct: 122 QFGVELIGSGKPDSDAEVIALADAMLKAAGVKGDMKLGNLAVIRTLLSGLEPEIVSKVMR 181

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLN--SIVEQWTAPYAATSDVHNEKLFDS 270
           L D  E     +            +D   +I L    I+ +         ++ + +    
Sbjct: 182 LVDKKEYAGLEALLEEIGAEEQLKSDLFHLIKLEGKRILPEVIKIVGNIPELVSFEKTLK 241

Query: 271 LPENKRVSA---RGIEVGHIFYFG---TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           L +   V      GI  G  +Y G     Y+  + A  +   G  + +     G      
Sbjct: 242 LLDAYGVDYSLDFGIARGLDYYTGMVFEVYAEGLGAQKQVCGGGSYQLIKLFGGGDVPST 301

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +          + P +     +                     +L K    V  D M
Sbjct: 302 GFGIGFDRIMEICPLTPPAPKTLMLISKP------DLHLKAIGFANKLRKY-VPVHVDLM 354

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
                +Q + A+ +     VIVG K +   K+ ++  ++G +E ++LEE+I   
Sbjct: 355 QRNFKAQLSYANTINADYVVIVGEKELEVGKLTLRDMVSGEQELLTLEEIIEKV 408


>gi|256544610|ref|ZP_05471982.1| histidine--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
 gi|256399499|gb|EEU13104.1| histidine--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
          Length = 432

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 68/429 (15%), Positives = 119/429 (27%), Gaps = 33/429 (7%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G+   LP  Q A D +  II E       + +  P ++  D+    G  ++  +     
Sbjct: 10  AGVMELLPEDQLAFDYIKNIIEETFLSYQFLPIDTPAIEKNDILFAKGGGETEKQIFGID 69

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           + + D ++ +  T          S   S  N PF  YQI   +R E   +    R +EF 
Sbjct: 70  SSKKDMSLRFDLTVPLARY---VSEHFSDLNFPFKRYQIAKVYRGERNQKG---RYKEFY 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG-------DLSHE 209
             D            +      V Y                    + G           E
Sbjct: 124 QCDIDIIGNNSLSIHNDALLPKVIYEIFQKLDFNGIKFHINNRKLLNGFFESLEISDKEE 183

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            +   D        +   +   I  E      +  +N+  E         S   N+    
Sbjct: 184 VLRTIDKKAKIGEENTKELLVEICGEEKADKLMELINNKRENKELLTYLESLNLNDNYKI 243

Query: 270 SLPENKRVSARGIEVG----------HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            L E K V    I+ G           I      Y+  +  TF         V  G    
Sbjct: 244 GLNELKEVYDYMIKFGIDDDSIMIDLSITRGLDYYTSTVYETFLDGYESIGSVCSGGRYE 303

Query: 320 GAMRVVA----------AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                 +            +         +        K +   +   D+        I 
Sbjct: 304 NLAGNFSKQNLPGVGLSIGLTRLFYQFQQLGLVEKYKTKFTDCLVIPMDEKLNFYAIDIA 363

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L + G  V       +   +   AD +G    +I+G +   +  V +K+   G +  +
Sbjct: 364 NKLKEQGLKVDIYLEDGKFKKKINYADKIGVKKVLIIGQEEYENKMVSVKNMEDGKQVSV 423

Query: 430 SLEEVINYA 438
            +EE+  Y 
Sbjct: 424 KVEEIREYL 432


>gi|302347938|ref|YP_003815576.1| Glycyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
 gi|302328350|gb|ADL18545.1| Glycyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
          Length = 583

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 5/142 (3%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW----PDSVAPFKISLINIKAHDQVCR 362
           G+ +   +     G  R++   +E ++  K        P  +AP   ++  +   ++   
Sbjct: 428 GRSYTPHVVEPSFGTDRLLYVALERAYREKEGRVVLSLPRYLAPVDAAVFPLIEGEEKLE 487

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++   L   G  V +DD G  IG ++A AD +G P    V  + + D  V ++ R 
Sbjct: 488 ARARQLRDLLVSAGFTVLYDDSG-SIGKRYARADEIGVPAAFTVDYQTLEDGTVTLRDRD 546

Query: 423 TGIREDMSLEEVINYASHRFSN 444
           T  +  + LE+          N
Sbjct: 547 TWRQVRLRLEDAPEALKKFIYN 568



 Score = 53.6 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 6/107 (5%)

Query: 37  KGIYSWLPLGQKALDNVNAIIRE--EQNRTGA-IEMSVPTLQSADLWVESGRYDSYGKEM 93
            G Y   P G      +    R     N     +E+  P +  + ++  SG  +S+   +
Sbjct: 30  AGFYDIGPYGLTVKRKIIEAWRRLFVFNHQDYVVEIETPAVGPSIVYEASGHVESFTDPV 89

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
           +R      +        E+       +   S   L     +  ++  
Sbjct: 90  VRCTKC-GRIYRADHLVED--ALKVSAEGLSPEELTRKIRENNIRCP 133


>gi|83590513|ref|YP_430522.1| histidyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
 gi|123752887|sp|Q2RHW0|SYH_MOOTA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|83573427|gb|ABC19979.1| histidyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
          Length = 423

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 66/406 (16%), Positives = 120/406 (29%), Gaps = 23/406 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    RE     G  E+  P  +  +L+        D   KEM    DR D+++   
Sbjct: 20  WYLLENTAREVSRLYGYREIRTPIFEHTELFNRGVGDTSDIVEKEMYTFIDRGDRSLTLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  H    R LP   + +   FR        + +  +F ++   S    P
Sbjct: 80  PEGTAPVVRAFVEHSLEARGLPVKLFYLGPMFRYGRPQAGRLRQFHQFGVEAFGSR--DP 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCSK 225
                        Y     RLGLK + +   S   P       E +        +  C  
Sbjct: 138 ALDAEVIALAMDFY----TRLGLKDLELHLNSVGCPACRPAHREKLKAYLRPRLEELCPT 193

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEKLFDSLPENK------R 276
               F             +   IV +    TA        H  ++ + L           
Sbjct: 194 CQGRFERNPLRIFDCKSPACQEIVREAPTVTASLCPDCAGHFHRVQEYLKALGIEFILDE 253

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F        + +  G  G+   +     G     +   +        
Sbjct: 254 HLVRGLDYYTKTAFEIMVKGIGAQSSIGGGGRYDGLVAALGGKQVPGIGFGLGLERVLLA 313

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
             I      P     + +         A  ++ A L   G     D +   +  Q   A+
Sbjct: 314 LEIQGQEPPPEGGVDVLVVTAGTGVDLAAFRLLAGLRAAGIRADKDYLERSLKGQMKYAN 373

Query: 397 LLGFP--LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              +P  + VI+G + ++  +V ++    G +E++ L  V++Y   
Sbjct: 374 --RYPARMAVILGEEELARGRVSVRRLDAGSQEEVPLAAVVDYCRK 417


>gi|297850234|ref|XP_002892998.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297338840|gb|EFH69257.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 363

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 73/238 (30%), Gaps = 27/238 (11%)

Query: 17  DAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
           D  +   +  L     H+ S G + +LP   +  + + A I++E  + G  E+  P + +
Sbjct: 80  DHILLGQQQELF--FCHELSPGSWFFLPHATRVYNKLMAFIKKEYWKRGYTEVMSPNMYN 137

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             LW  SG   +  + M    D + +       +      +F+  ++S R        + 
Sbjct: 138 MKLWETSGHAANEKENMFTF-DVDKQEFGLKHVNCPGHCLLFQQRVRSCREHALIQKVMF 196

Query: 137 LKFRDELRPRFGV--------------MRSR---EFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +        +G                      +F   D +  + +       +  +  
Sbjct: 197 WQLNKGNGKFYGPSIDVRISDAVKKNIQCGTLQLDFQQPDRFKLEYSSSAEDEMFFILLE 256

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
            Y   +                I   LS +    A+    Q+  ++ ++D  I     
Sbjct: 257 HYEGKWPFWLSPH-------QAIVCSLSEKHRSYAEKVRDQIHEARYYVDVDISGRKI 307



 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/352 (10%), Positives = 93/352 (26%), Gaps = 57/352 (16%)

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              +R ++         + +    +  +     L    +                 +   
Sbjct: 63  PCTNREEEVYTEDARQCDHILLGQQQELFFCHELSPGSWFFLP------HATRVYNKLMA 116

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F+ K+ +    T   S + YN                      +                
Sbjct: 117 FIKKEYWKRGYTEVMSPNMYNMKLWETSGHAANEKENMFTFDVDKQ-------------- 162

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDII---SLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           + G   V C    + F     +     +I       + +     Y  + DV    + D++
Sbjct: 163 EFGLKHVNCPGHCLLFQQRVRSCREHALIQKVMFWQLNKGNGKFYGPSIDVR---ISDAV 219

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            +N +     ++    F    ++ L  S++ +                    +   ++E 
Sbjct: 220 KKNIQCGTLQLD----FQQPDRFKLEYSSSAEDE------------------MFFILLEH 257

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                                 + +  +  R   EK+  ++ +    V  D  G +I  +
Sbjct: 258 YEGKWPFWLSP-------HQAIVCSLSEKHRSYAEKVRDQIHEARYYVDVDISGRKIEEK 310

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHR--LTGIREDMSLEEVINYASHR 441
              A    +   + VG    +  +V ++ R         MS+E +++    +
Sbjct: 311 VREAQAAQYNYILAVGDFEAATGQVSVRRREENGSDFVVMSIEALLDVFKAQ 362


>gi|94501124|ref|ZP_01307647.1| histidyl-tRNA synthetase [Oceanobacter sp. RED65]
 gi|94426700|gb|EAT11685.1| histidyl-tRNA synthetase [Oceanobacter sp. RED65]
          Length = 426

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 63/442 (14%), Positives = 122/442 (27%), Gaps = 63/442 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP   +      + ++   +  G  E+  P ++   L+  S G   D   KEM  
Sbjct: 11  GMNDILPGESQVWRYFESTVKSVLDGFGYQEIRTPVVEQTHLFKRSIGEVTDIVEKEMYT 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H     N     + +   FR E   +    +  + 
Sbjct: 71  FDDRNGESLTLRPEGTASCVRACEQHQLIANNQRQRLWYMGPMFRYERPQKGRYRQFHQI 130

Query: 156 ----------------------LMKDAYSFDLTP--------EGSKHSYNKMFVSYLRIF 185
                                 L K     D             ++ +Y    V YL   
Sbjct: 131 GVETFGMADPAIDAELIVMTHQLWKKLGIRDKVELELNTIGSNEARANYKAALVDYLSGV 190

Query: 186 HRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                +    R ++ P  I          L +          +  +          D++ 
Sbjct: 191 KDQLDEDSQRRLDTNPLRILDSKDQNTQSLLNDAPNFHDYLDEESEAHFAELKALLDEVG 250

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               +  +        S    E +   L     V A G   G +   G K +        
Sbjct: 251 IEYKVNPRLVRGLDYYSKTVFEWITSELGAQGTVCAGGRYDGLVEQLGGKAT-------- 302

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                       + G         ++  S +        ++  + +S+ N+         
Sbjct: 303 -----------PAVGFAMGMERLILLLESLNVIPDQVKSNIDVYLVSMGNVTT------- 344

Query: 364 ACEKIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH- 420
           A   + A+L +      +     G     Q   AD  G    +I+G   V   +  IK  
Sbjct: 345 AAMALAAQLREAVPKLRLQMHIGGGNFKKQMKKADESGARFALILGEDEVKAGQASIKSL 404

Query: 421 RLTGIREDMSLEEVINYASHRF 442
           R +  +  ++ +E+ N+   + 
Sbjct: 405 RDSAEQMTLNNDELANWLQQQL 426


>gi|224282568|ref|ZP_03645890.1| glycyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
          Length = 422

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 94/256 (36%), Gaps = 20/256 (7%)

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           +  EF V+  T E       D           + +++       E+ +     T D+  +
Sbjct: 129 MEMEFFVVPGTDEEWHQYWIDTRTRWYTDLGINPENLRHYEHPKEKLSHYSKRTVDIEYK 188

Query: 266 KLFDS--LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             F      E + ++ R           +K+S    + F  A G+     +     G  R
Sbjct: 189 FGFQGSDWGELEGIANRTDYDLSAH---SKHSGEDLSYFNQATGEKFVPYVIEPAAGLTR 245

Query: 324 VVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            + A +  ++D                      +AP K +++ +    ++       + A
Sbjct: 246 SLMAFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSKKPELQS-IAHDLAA 304

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L +    + +D+ G  IG ++   D +G PL + V    + D  V I+ R T  +E ++
Sbjct: 305 DLRQHEWMIDYDEAGA-IGRRYRREDEIGTPLCITVDFDTIDDQAVTIRERDTMQQERVA 363

Query: 431 LEEVINYASHRFSNNR 446
           L++V +Y + R S  R
Sbjct: 364 LDKVADYVAARVSEKR 379


>gi|309775571|ref|ZP_07670571.1| histidine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916665|gb|EFP62405.1| histidine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 445

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/400 (13%), Positives = 122/400 (30%), Gaps = 13/400 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLA-DRNDKAMIYG 107
              +  +IR+        E+  P  +  +++       D   KEM     + +  ++   
Sbjct: 20  WHRLEELIRQFTYVYNYQEIRTPIFEHTNVFKRGNDSSDMVNKEMYTFQLENSSTSLTLR 79

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +        +  Y +LP   Y +  + R E   +  +    +F ++   +    
Sbjct: 80  PECTAGVARAFVEHKMYGYADLPIKMYYVGPQCRHERPQKGRMRIFNQFGVEVIGAKSPL 139

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +    +    F+S L +     L +     ES         E     D       C + 
Sbjct: 140 LDVETIALGWSFISALGLKDMKVLINTLGDDESRAAYRKALKE-HFKNDISHMCADCQRR 198

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENKRVS 278
           +   P+   +   D  + +   V +        S  + +++ + L         ++K V 
Sbjct: 199 YEQNPLRILDCKVDHELPIMKNVPKMADYLNEESKAYFKQVLEGLDALGIPYEVDDKLVR 258

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI-GAMRVVAAVIESSHDGKG 337
                   +F   +      + +   A G+   +     G  G   +  A+         
Sbjct: 259 GLDYYTHTVFEVVSVNKEMGAQSTVFAGGRYDGLVEYFGGPQGMSGIGWAMGLERLLIAL 318

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                S+A  +     +            ++   L   G     D +     +QF   D 
Sbjct: 319 EAEGISLADEEGLDAYVLCLSPEAATTALQVVTELRAAGYRSDMDYLNRSFKAQFKTVDR 378

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
               + +++G   V +  V +K   T  +  ++L+ V++ 
Sbjct: 379 KKAKVAIMIGETEVQNGTVNMKEIETQEKLTVALDAVVDT 418


>gi|148381006|ref|YP_001255547.1| histidyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153931156|ref|YP_001385377.1| histidyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153937842|ref|YP_001388784.1| histidyl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|166227960|sp|A7FY04|SYH_CLOB1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166227961|sp|A5I6D6|SYH_CLOBH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|148290490|emb|CAL84618.1| histidyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|152927200|gb|ABS32700.1| histidyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152933756|gb|ABS39255.1| histidine--tRNA ligase [Clostridium botulinum A str. Hall]
 gi|322807356|emb|CBZ04930.1| histidyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 415

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 56/397 (14%), Positives = 107/397 (26%), Gaps = 11/397 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    R      G  E+  P  +  +L+        D   KEM    D+  +++   
Sbjct: 20  WQYLENKFRNIAADFGCREIRTPVFEYTELFQRGVGETTDVVQKEMYTFEDKAGRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F          P   Y      R E   +    R R+        F    
Sbjct: 80  PEGTSPAVRAFVEGRLFNETQPTKMYYFTPVMRYENVQKG---RLRQHHQFGIEIFGAKD 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                    + V   +     G++         P      +E +    +      CS   
Sbjct: 137 ASVDAEVISIPVGIYKELGVEGVELNINSIGC-PKCRKTYNEALKKYLSKNYDKLCSTCK 195

Query: 228 MDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEKLFDSLP--ENKRVSARGI 282
             F           + +   IV+               H E L   L   + K      I
Sbjct: 196 TRFDKNPLRILDCKVDTCKEIVKDAPIILDYICDECKDHFEALKSYLDVLDIKYKVDPFI 255

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
             G  +Y  T +   +      A G+  Y+     G     V   +              
Sbjct: 256 VRGLDYYSKTVFEFIIDDITICAGGRYDYLIEEIGGPSMPAVGFGMGIERLLLTLQEKAI 315

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            +       + +       +    K+   L         D MG+ + +Q   A+ +G   
Sbjct: 316 EIPEEAYVDLYLGNMGDKAKLEVLKLAKELRDRHIKCEIDHMGKSVKAQMKYANRIGAKY 375

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +++G + ++  KV +K    G + ++ ++E+     
Sbjct: 376 SMVLGEEELNTGKVSLKRMEDGQQIEVDIKEIDTLIK 412


>gi|15678272|ref|NP_275387.1| histidyl-tRNA synthetase [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2621293|gb|AAB84750.1| histidyl-tRNA synthetase [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 444

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 54/412 (13%), Positives = 117/412 (28%), Gaps = 25/412 (6%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMI 105
            +    V  ++R      G  E+  P  +   L+  +SG  +    ++    D+  + + 
Sbjct: 36  MRNRKEVEGVLRRTFETYGYHEIKTPIFEELKLFTVKSG--EEVVNQIYHFTDKGGRELA 93

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P     +  ++ + ++  +  P   Y     FR E        R R+F          
Sbjct: 94  LRPELTAPVARLYMNEMQ-KKPKPIKMYYFGSCFRYERPQAG---RFRQFWQFGCELIGG 149

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-------SGPIGGDLSHEFIVLADTGE 218
               ++     +    L      G +                 I  +L    + + D G+
Sbjct: 150 RSPLAEAEVISLASESLHELGLDGFEVHIGHLGILRGILGREEIPSELQDRIMGVIDKGD 209

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLN------SIVEQWTAPYAATSDVHNE-----KL 267
            +   +                 +I           VE++   Y+ + +   E     + 
Sbjct: 210 VEELEALLGEVEVSGESRELLMKLIGTQGGPEVLDDVEEYLGGYSESLEALEEFRELVET 269

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                 +      GI  G  +Y G  + + +                     G  RV + 
Sbjct: 270 LHYFGVDDYHVNLGIARGLDYYTGIVFEIYVPELGAQKQICGGGTYNLVETFGGERVEST 329

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                 D             ++  + +            +I   L   G     +  G +
Sbjct: 330 GFAFGFDRLMNALGMDEENMRMVDVFVIPIQDSTVPEAIRITQELRAAGVSADLEVSGRK 389

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +    + AD LG    V+ G + + D KV +K      +E +  +E+++   
Sbjct: 390 LRKALSHADNLGARFAVLTGEREIQDGKVTVKDMERNSQETLPRDEMVDKIK 441


>gi|207744373|ref|YP_002260765.1| prolyl-trna synthetase protein [Ralstonia solanacearum IPO1609]
 gi|206595778|emb|CAQ62705.1| probable prolyl-trna synthetase protein [Ralstonia solanacearum
           IPO1609]
          Length = 84

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 38/63 (60%)

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            R   ++++A L+  G DV  DD GE+ G  FA  +L+G P +V+VG + + + K+E++ 
Sbjct: 1   MRAEADRLHAELAAAGIDVILDDRGERPGVMFADWELIGVPFRVVVGERGLKEGKLELQG 60

Query: 421 RLT 423
           R  
Sbjct: 61  RRD 63


>gi|187778364|ref|ZP_02994837.1| hypothetical protein CLOSPO_01956 [Clostridium sporogenes ATCC
           15579]
 gi|187771989|gb|EDU35791.1| hypothetical protein CLOSPO_01956 [Clostridium sporogenes ATCC
           15579]
          Length = 415

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 56/406 (13%), Positives = 115/406 (28%), Gaps = 29/406 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    R      G  E+  P  +  +L+        D   KEM    D+  +++   
Sbjct: 20  WQYLENKFRNIAADFGCREIRTPVFEYTELFQRGVGETTDVVQKEMYTFEDKAGRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F          P   Y      R E   +    R R+        F    
Sbjct: 80  PEGTSPAVRAFVEGRLFNETQPTKMYYFTPVMRYENVQKG---RLRQHHQFGIEIFGAKD 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                    + V   +     G++         P      +E +    +      CS   
Sbjct: 137 ASVDAEVISIPVRIYKELGVNGVELNINSIGC-PKCRKTYNEALKKYLSKNYDKLCSTCK 195

Query: 228 MDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEKLFDSLP------ENKRVS 278
             F           + +   IV+               H E L   L       +     
Sbjct: 196 TRFDKNPLRILDCKVDTCKEIVKDAPIILDYICDECKEHFESLKSYLDVLNINYKVDPFI 255

Query: 279 ARGIEV--GHIFYFGTKYSLPM---SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            RG++     +F F T            +   +     +    +G+G  R++  + E + 
Sbjct: 256 VRGLDYYSKTVFEFITDDITICAGGRYDYLIEEIGGPSMPAVGFGMGMERLLLTLQEKAI 315

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           +          A   + L N+       +    K+   L         D MG+ + +Q  
Sbjct: 316 EI------PEEAYVDLYLGNMGDK---AKLEVLKLAKELRDRHIKCEIDHMGKSVKAQMK 366

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            A+ +G    +++G + ++  K  +K    G + +++++++     
Sbjct: 367 YANRIGAKYSMVLGEEELNTGKATVKRMEDGEQIEVNIKDIDTLIK 412


>gi|45357775|ref|NP_987332.1| glycyl-tRNA synthetase [Methanococcus maripaludis S2]
 gi|59798541|sp|Q6M0Q7|SYG_METMP RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|45047335|emb|CAF29768.1| glycyl-tRNA synthetase [Methanococcus maripaludis S2]
          Length = 574

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 86/285 (30%), Gaps = 23/285 (8%)

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG------PIGGDLSHEFIVLADTGETQV 221
                 Y            R G       A+         +        + +    E ++
Sbjct: 303 PNEMAHYAADCWDAELYTDRYGWIECVGVADRTNYDLLAHMKNSGDDLSVFVELDEEHEI 362

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
              +  +++ +       D  +   S+ E          +    +    L   KR     
Sbjct: 363 EAYEIELNYKLVGRTFKGDAKVLEESLKELDDKKMEELVEALETEGKYVLKTCKRDFEIL 422

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH----DGKG 337
            E                       G+     +     G  R+   V+E +     D   
Sbjct: 423 KEYLTAKKVKKIV-----------KGEKIIPHVIEPSYGIDRITYCVMEHAFKEDEDRTV 471

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           + + ++V+P K+ +  +    +   +    +  +L + G    +DD G  IG ++   D 
Sbjct: 472 MGFSNAVSPIKVGVFPLVNK-EGMPEIAMDLKNKLRENGLIAEYDDSGA-IGRRYMRMDE 529

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +G P  + +  + + D  V I+ R +  +  + + EV+ Y   + 
Sbjct: 530 VGTPFCITIDGETLKDRSVTIRERDSREQFRIPINEVVPYIKDKL 574



 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 1/109 (0%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G + + PLG    +NV    R+      G  E+  PT+   ++   SG  +++   ++ 
Sbjct: 28  AGFFDYGPLGAILKNNVINTWRKHYIVNEGFYEIDSPTVTPYEVLKASGHVENFTDPLVE 87

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  +         E V  D     ++  + +         K   E +
Sbjct: 88  CKDCLESFRADHIIEENVDVDTEGKTLQELQEMIEKNNIRCPKCGGEFK 136


>gi|291085038|ref|ZP_06570910.1| histidine--tRNA ligase [Citrobacter youngae ATCC 29220]
 gi|291071731|gb|EFE09840.1| histidine--tRNA ligase [Citrobacter youngae ATCC 29220]
          Length = 414

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 60/422 (14%), Positives = 125/422 (29%), Gaps = 31/422 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLAD 98
            +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM    D
Sbjct: 3   DYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFED 62

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           RN  ++   P            H   Y      +Y     FR E   +    R R+F   
Sbjct: 63  RNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRHERPQKG---RYRQFHQL 118

Query: 159 DAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
               F    P+            +  +     +        S           +   +  
Sbjct: 119 GVEVFGLQGPDIDAELIMLTARWWRALGISQHVSLELNSIGSLEARASYRDALVAYLEQH 178

Query: 218 ETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN- 274
           + ++   C +     P+   ++   ++ +L +   Q        S  H   L   L    
Sbjct: 179 KDKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPQLGDYLDDDSREHFAGLCKLLESAG 238

Query: 275 -----KRVSARGIEV--GHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                 +   RG++     +F       G++ ++     + G   +       + G    
Sbjct: 239 IAYTVNQRLVRGLDYYNRTVFEWVTSSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMG 298

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVF 380
                ++                   +  I + A     + A  ++  RL     G  + 
Sbjct: 299 LERLVLLV-------QAVNPEFIASPVVDIYLVASGTDTQSAAMRLAERLRDEVPGVKLM 351

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +  G     QFA AD  G  + +++G   V++  V +K   +G +  ++ + V  +   
Sbjct: 352 TNHGGGNFKKQFARADKWGARVALVLGESEVANGTVVVKDLRSGEQTAVAQDSVAAHLRT 411

Query: 441 RF 442
             
Sbjct: 412 LL 413


>gi|289207920|ref|YP_003459986.1| histidyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
 gi|288943551|gb|ADC71250.1| histidyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
          Length = 427

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 58/421 (13%), Positives = 125/421 (29%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G++  LP       ++   +R   +  G  E+ +P +++ +L+  S     D   KEM  
Sbjct: 9   GMHDILPESIHVWQHLEDRLRGLLDGYGYQEIRMPVVEATELFKRSIGDVTDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   +  +   +Y     + +   + R R      
Sbjct: 69  FEDRNGDSLSLRPEGTASCVRAGIQHGLLHNQVQRLWYLGPMFRHERPQKGRYRQFHQVG 128

Query: 153 REFLMKDAYSFDLTPEGSKHSYNK--MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            E         D           K     +     + LG  +  +R     I     H  
Sbjct: 129 VEVFGLPGPDVDAEMIAMTARLWKLLGLENVRLELNTLGTPASRVRYRDQLIAYFEQHRD 188

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            +  +            +D   P       +  SL   ++  +  +  +   H + L  +
Sbjct: 189 SLDEEALRRLHDNPMRILDSKHPETRAVVANAPSLMDHLDAESRTHFDSLRAHLDALGIA 248

Query: 271 LPENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              N R+  RG++     +F       G + ++     + G   +       + G+    
Sbjct: 249 YVHNPRL-VRGLDYYTHTVFEWITDDLGAQGTVCAGGRYDGLVEQLGGRGTPAIGMAMGL 307

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
                +  + +                   +        +  E++ + L   G  +    
Sbjct: 308 ERLVALLEAREDAPQPPGPDAYLVVGGDELVGP----ALELAERLRSELP--GLRLVQHC 361

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT--GIREDMSLEEVINYASHR 441
            G    SQ   AD LG    +++G+   +   V +K   +    +  +  EE+  +    
Sbjct: 362 GGGSFKSQMKRADRLGAHFALVLGTDEHAAGTVTVKPLRSPGAEQSAVPREELARHLEQA 421

Query: 442 F 442
            
Sbjct: 422 L 422


>gi|182412822|ref|YP_001817888.1| glycyl-tRNA synthetase [Opitutus terrae PB90-1]
 gi|177840036|gb|ACB74288.1| glycyl-tRNA synthetase [Opitutus terrae PB90-1]
          Length = 509

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 66/498 (13%), Positives = 143/498 (28%), Gaps = 93/498 (18%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
           R G + Q S       G + + PLG +   N+      +    R   + +    +    +
Sbjct: 21  RRGFVFQSSEIYGGLNGFFDYGPLGVELKKNIRDCWWNDMVRRRDDVVGLESSIIMHPKV 80

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
           W  SG    +   ++       +          V+ D       S      T  ++Q   
Sbjct: 81  WEASGHVAGFTDPLIDCKVSKQRFRADQLFFAPVVVDDKTVGYVSALESENTTGELQAA- 139

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS-------------------YNKMFVS 180
                  F   ++ +  +    + D+T    +                     +N MF +
Sbjct: 140 ----AENFKRKKAIQGQLAPVVAKDMTEAKPEEIALIPSPATGEPGSLTPPRAFNMMFET 195

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL---------------------------SHEFIVL 213
           Y+         +      +  +  D                               FI  
Sbjct: 196 YVGPMRDSSAVAYLRPETAQGMFVDFKNVVDTGRVKLPFGIAQIGKSFRNEITPRNFIFR 255

Query: 214 A---DTGETQVFCSKDFMD-----FPIPSENTDFDDIISLNSIVEQWT------APYAAT 259
           +   +  E + F  +D          I         I    S +  ++      A Y+  
Sbjct: 256 SREFEQMEMEYFIHEDADWAKCHQEWIDWCRNWLISIGLPESHLSFFSHPKEKLAFYSKG 315

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     K    + E   ++ARG    +      + S      F     K     +    +
Sbjct: 316 TVDIMFKYPFGVQELWGIAARGNYDLNQH---AQASGKSQEYFDEPSKKRFVPHVIEPAV 372

Query: 320 GAMRVVAAVIESSHDGKGII-------------WPDSVAPFKISLINIKAHDQVCRDACE 366
           G  R+  AV+ +++                       +AP K++++ +  + +      +
Sbjct: 373 GVDRIFLAVLCAAYTEDEAPDEKGKMEKRIVLKLSPRIAPVKVAVLPLLKNKEQLTQRAK 432

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTG 424
            +YA+L +     F+DD G  IG ++   D +G P  V +    +        ++ R + 
Sbjct: 433 ALYAKLKRK-YAAFYDDGGA-IGRRYRRQDEIGTPWCVTIDFDTIEKPGDTFTLRERDSM 490

Query: 425 IREDMSLEEVINYASHRF 442
            +  ++  E+      + 
Sbjct: 491 KQSRITEAELFALLDEKV 508


>gi|189462867|ref|ZP_03011652.1| hypothetical protein BACCOP_03567 [Bacteroides coprocola DSM 17136]
 gi|189430483|gb|EDU99467.1| hypothetical protein BACCOP_03567 [Bacteroides coprocola DSM 17136]
          Length = 514

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 64/395 (16%), Positives = 126/395 (31%), Gaps = 57/395 (14%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD-SYGKEMLRLADRNDKAMIYGP 108
           L+ +  II +E       E+  P +     W E  +++  +  EM   AD   K  +   
Sbjct: 167 LNELRQIILDE-------EIVCP-ISGTKNWTEVRQFNLMFSTEMGSTADGAMKVYLRPE 218

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   QI   FR+E+  R  + R REF   +   F   P 
Sbjct: 219 TAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFFVK-PG 277

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                + K   + L+    LG      R           HE +       T +     F 
Sbjct: 278 TELEWFQKWKETRLKWHKALGFGDDHYRYHD--------HEKLAHYANAATDIEFLMPF- 328

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                                      +     +H+   FD     K         G   
Sbjct: 329 --------------------------GFKEVEGIHSRTNFDLSQHEK-------YSGKSI 355

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
            +           +             S    A       +E+      +  P ++AP K
Sbjct: 356 KYFDPEINESYTPYVIETSIGVDRMFLSIMSAAY--HEETLENGETRVVLKLPAALAPVK 413

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ +   D    +   +I   L        +D+    IG ++   D +G P  + +  
Sbjct: 414 LAIMPLVKKD-GLPEKAREIMDDLK-FHFHCQYDEKD-SIGKRYRRQDAIGTPYCITIDH 470

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + D+ V +++R T  +E +++ ++ +  + + S
Sbjct: 471 QTLEDNCVTLRNRDTMEQERVAIADLNSIIADKVS 505


>gi|295704483|ref|YP_003597558.1| threonyl-tRNA synthetase 2 (Threonine--tRNA ligase)(ThrRS)
           [Bacillus megaterium DSM 319]
 gi|294802142|gb|ADF39208.1| threonyl-tRNA synthetase 2 (Threonine--tRNA ligase)(ThrRS)
           [Bacillus megaterium DSM 319]
          Length = 113

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 38/86 (44%)

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             +   K+   L   G  V  DD  E+IG +   A++L  P   ++G + V +  + ++ 
Sbjct: 26  HVEYAYKVKHELESQGYRVEVDDRIEKIGLKIREAEMLKVPYMAVIGDREVENESLAMRK 85

Query: 421 RLTGIREDMSLEEVINYASHRFSNNR 446
                   +S++E   Y +   ++NR
Sbjct: 86  HGKENIGTVSVKEAAVYLNKEMNSNR 111


>gi|7676162|sp|O26346|SYH_METTH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
          Length = 425

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 54/412 (13%), Positives = 117/412 (28%), Gaps = 25/412 (6%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMI 105
            +    V  ++R      G  E+  P  +   L+  +SG  +    ++    D+  + + 
Sbjct: 17  MRNRKEVEGVLRRTFETYGYHEIKTPIFEELKLFTVKSG--EEVVNQIYHFTDKGGRELA 74

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P     +  ++ + ++  +  P   Y     FR E        R R+F          
Sbjct: 75  LRPELTAPVARLYMNEMQ-KKPKPIKMYYFGSCFRYERPQAG---RFRQFWQFGCELIGG 130

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-------SGPIGGDLSHEFIVLADTGE 218
               ++     +    L      G +                 I  +L    + + D G+
Sbjct: 131 RSPLAEAEVISLASESLHELGLDGFEVHIGHLGILRGILGREEIPSELQDRIMGVIDKGD 190

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLN------SIVEQWTAPYAATSDVHNE-----KL 267
            +   +                 +I           VE++   Y+ + +   E     + 
Sbjct: 191 VEELEALLGEVEVSGESRELLMKLIGTQGGPEVLDDVEEYLGGYSESLEALEEFRELVET 250

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                 +      GI  G  +Y G  + + +                     G  RV + 
Sbjct: 251 LHYFGVDDYHVNLGIARGLDYYTGIVFEIYVPELGAQKQICGGGTYNLVETFGGERVEST 310

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                 D             ++  + +            +I   L   G     +  G +
Sbjct: 311 GFAFGFDRLMNALGMDEENMRMVDVFVIPIQDSTVPEAIRITQELRAAGVSADLEVSGRK 370

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +    + AD LG    V+ G + + D KV +K      +E +  +E+++   
Sbjct: 371 LRKALSHADNLGARFAVLTGEREIQDGKVTVKDMERNSQETLPRDEMVDKIK 422


>gi|46206189|ref|ZP_00047605.2| COG0423: Glycyl-tRNA synthetase (class II) [Magnetospirillum
           magnetotacticum MS-1]
          Length = 322

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 118/347 (34%), Gaps = 39/347 (11%)

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           +  + D +    +   T + +  +       S +  PF   QI   FR+E+ P   + R+
Sbjct: 7   LGPVEDESGLHYLRPETAQGIFVNFANVMGASRKKPPFGIGQIGKSFRNEITPGNFIFRT 66

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REF   +   F   P      +     +    +  LG++   +R    P    LSH    
Sbjct: 67  REFEQMEMEFFVE-PGTDAEWHQYWIDTRTDWYVDLGIQRDNLRLYEHP-QEKLSHYSTR 124

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             D      F   ++ +    +  TDFD    L +  E      +      NE+    + 
Sbjct: 125 TVDIEYRFGFSGSEWGELEGIANRTDFD----LKTHAEHSGKDLSYFDQTKNERWVPYVI 180

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      R +            +  + A  +               +             
Sbjct: 181 EPAAGLTRSL-----------MAFLVEAYTEDEAPNAKGGVDTRTVL------------- 216

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      +AP K +++ + + ++      + +   L K   +V +DD G  IG ++
Sbjct: 217 ------RLDHRLAPVKAAVLPL-SRNEQLSPKAKDLATELRKYW-NVDFDDAGA-IGRRY 267

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              D +G P  + V    + D  V I+HR +  +E ++L++V  Y +
Sbjct: 268 RRQDEIGTPFCITVDFDTLDDQAVTIRHRDSMSQERVALDKVTEYLA 314


>gi|167465424|ref|ZP_02330513.1| histidyl-tRNA synthetase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322382956|ref|ZP_08056788.1| histidyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153076|gb|EFX45534.1| histidyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 424

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 60/404 (14%), Positives = 108/404 (26%), Gaps = 13/404 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  +      R G  E+  P  +  +L+        D   KEM    D+  + +   
Sbjct: 20  WQRLEKLAGNICRRFGYREIRSPIFEHTELFSRGVGETTDIVEKEMYTFEDKGKRNISLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  +           Y     FR E        +  +F ++        P
Sbjct: 80  PEGTAGVVRAYIENKLYGEPDLTKLYYFGPMFRYEQPQSGRNRQFHQFGVEA--IGSADP 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                +    F     I  +     I       P    +  E I           C    
Sbjct: 138 GLDAEAIALGFTFLREIGLKDVRIEINSVG--TPAVRSVYREKIREFFAPVKDKLCKDCQ 195

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYA-ATSDVHNEKLFDSLPENK------RVSAR 280
             +           I             Y      VH E +   L + +          R
Sbjct: 196 SRYDRNPMRILDCKIDQKYGEGAPSILDYLDEECSVHFETVKSMLTDMEIPFDVNHRMVR 255

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           G++      F  K +   +    G  G+ + +     G     V  A+            
Sbjct: 256 GLDYYTHTAFEYKAAGIGAIDTVGGGGRYNGLVGEIGGQDQPGVGFALGVERILLLLEAQ 315

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
               A  +   + +    +    A  K+  +L   G     D  G +I +Q   AD L  
Sbjct: 316 GVEFAKPESLDLYVIGLGEAAERAIVKLVHQLRLEGLSTEKDYQGRKIKAQMKSADRLHA 375

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
               I+G   +   ++ +KH  TG +E + LE        + + 
Sbjct: 376 AYVAILGDDELERGEITVKHMATGEQETLPLEGFSQAMKKKINK 419


>gi|262040251|ref|ZP_06013502.1| histidine-tRNA ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042360|gb|EEW43380.1| histidine-tRNA ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 424

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 53/419 (12%), Positives = 114/419 (27%), Gaps = 19/419 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETALWQRIEGSLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYVGPMFRHERPQKGRYRQFHQIG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +       
Sbjct: 130 AEVFGLQGPDIDAELIMLTARWWRELGISEHVSLELNSIGSLEARANYRDALVAYLEQFT 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA------TSDVH 263
             +  D+           +D   P      +D  +L   +++ +  + A           
Sbjct: 190 DKLDEDSKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDEESKAHFAGLCALLDDAGI 249

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L        R +        G++ ++     + G   +         G     
Sbjct: 250 RYTVNQRLVRGLDYYNRTVFEWVTTSLGSQGTVCAGGRYDGLVEQLGGRATPGVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++          +          + +            E++   L   G  +  + 
Sbjct: 310 ERLVLLVQ---AVNPEFKADPVVDIYLVASGTDTQSAAMCLAEQVRDALP--GVKLMTNH 364

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            G     QFA AD  G  + ++VG   ++D  V +K   +G +  ++ E V  +     
Sbjct: 365 GGGNFKKQFARADKWGARVALVVGESEIADGNVVVKDLRSGEQTTVTQESVAAHLRTLL 423


>gi|320449890|ref|YP_004201986.1| glycyl-tRNA synthetase [Thermus scotoductus SA-01]
 gi|320150058|gb|ADW21436.1| glycyl-tRNA synthetase [Thermus scotoductus SA-01]
          Length = 506

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 59/374 (15%), Positives = 119/374 (31%), Gaps = 57/374 (15%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +   +  + D    A +   T + +  +       + R LPF   QI   FR+E+ PR  
Sbjct: 170 FKTYVGPVEDEASLAYLRPETAQGIFVNFKNVLDSTSRKLPFGIAQIGKAFRNEITPRNF 229

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P   ++ +       LR +  +GL       ++         
Sbjct: 230 IFRVREFEQMEIEYFVR-PGEDEYWHRYWVEERLRWWQEMGLSR-----DNLVPYEQPPE 283

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E    A      ++     ++      N    D+ S     E+                 
Sbjct: 284 ELAHYAKATVDILYRFPHGLEELEGIANRTDFDLGSHTKDQEELGI-------------- 329

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                                   ++S    A      G+     +     G  R V A+
Sbjct: 330 -----------------TARVLKNEHSTARLAYRDPDTGRWFVPYVIEPSAGVDRGVLAL 372

Query: 329 IESSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-D 378
           +  +   + +              +AP K+++I +  +     +  +++ ARL  +G   
Sbjct: 373 LSEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVRNRPEITEYAKRLKARLQALGLGR 432

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV---SDSK------VEIKHRLTGIREDM 429
           + ++D G  IG  +   D +G P  + V    +    D        V ++ R T  +  +
Sbjct: 433 ILYEDTG-NIGKAYRRHDEVGTPFAITVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRL 491

Query: 430 SLEEVINYASHRFS 443
            +EE+  +   +  
Sbjct: 492 HVEELEGFLREKLR 505


>gi|82617275|emb|CAI64180.1| glycyl-tRNA synthetase [uncultured archaeon]
          Length = 594

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 81/549 (14%), Positives = 149/549 (27%), Gaps = 145/549 (26%)

Query: 37  KGIYSWLPLGQKALDNVNA-----IIREE---------------QNRTGAIE-------- 68
            G Y + PLG      +        + EE                + +G           
Sbjct: 37  AGFYDYGPLGAMLKRRIEDIWRKMYVIEEGFYEIETPTIGIAAIFDASGHTRGFSDPMVV 96

Query: 69  -----------------MSVPTLQSADLWVE--------------SGRYDSY--GKEMLR 95
                            +  P    A                   SG +        M +
Sbjct: 97  CSKCDHSFRADHLIEGIVETPDALPASEIKRLIDENGIKCPQCGGSGTFGGVSSFNLMFK 156

Query: 96  LADRNDKA---MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                       +   T + +  D           LPF   QI   +R+E+ PR GV+R 
Sbjct: 157 TTIGPGAERVGYLRPETAQGMFVDFEHLFRFYREKLPFGVTQIGKAYRNEISPRQGVIRL 216

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM-----------RAESGP 201
           REF   +A  F    E +   ++ +    LR +     +                A    
Sbjct: 217 REFTQAEAEIFINPTEKNHPKFSMIEDMVLRYYPAPHQRVSHPAHEDDGGIIELNARDAV 276

Query: 202 IGGDLSHEFIVLA---------------------------------DTGETQVFCSKDFM 228
               ++HEF+                                    D  + +V   +   
Sbjct: 277 DRAIVAHEFLAYHLVLTHLFLVRVGIDPARLRFRQHQPDEMAHYAVDCWDAEVLTDRFGW 336

Query: 229 ------------DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV---------HNEKL 267
                       D    +E++  D  + +     +     A   D+            K+
Sbjct: 337 VEIVGIADRTDYDLSSHAEHSKKDLSVLIEYDTPKQVERIAVKPDMSVIGPLYKGKAGKV 396

Query: 268 FDSLPENKRVSARGIE-----VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
             +L        RG E      G +           +   +   G+     +     G  
Sbjct: 397 LAALIGLGEEDLRGDEIKIEIDGEMITIPRDLVEYETV-IEEVRGERVIPHVIEPSFGID 455

Query: 323 RVVAAVIESSH--------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           R++ A +E S             +  P  VAP +++++ +   +++       I   L +
Sbjct: 456 RIIYAALEHSFSEELVAGVTRNVLHLPAEVAPVQVAVLPLLTREELIAP-ALAIVGTLRE 514

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V +DD G  IG ++   D +G P  V +  + + D  V I+ R +  +  M + E+
Sbjct: 515 NGVFVSYDDSG-TIGRRYRRNDEIGTPFSVTIDYETLDDDTVTIRDRDSMAQIRMPIGEL 573

Query: 435 INYASHRFS 443
                    
Sbjct: 574 AETLRAMIR 582


>gi|171920436|ref|ZP_02931750.1| glycyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508559|ref|ZP_02958077.1| glycyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|171902885|gb|EDT49174.1| glycyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182676001|gb|EDT87906.1| glycyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
          Length = 473

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 49/434 (11%), Positives = 126/434 (29%), Gaps = 38/434 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG    +N+  +  +E    +   + +    + +  +W  SG  D++   ++   
Sbjct: 35  WDYGPLGVLLKNNLKNLWWKEFVTRQKNIVGLDSAIILNPLVWKASGHLDNFSDPLIDCK 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           +            E    +I  +   +           ++      +  +  +R    + 
Sbjct: 95  NC-KTRYRADKLIESFNKNIHIAENSTNEEFMKVLNDHKIFCPTCKQFNWTDIRHFNLMF 153

Query: 158 KDAYSFDLTPEG---------------SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           K        P+                 K+    M +       ++G            I
Sbjct: 154 KTHQGVIEDPKNIVYLRPETAQGIFVNFKNVQRSMRLHLPFGIAQIGKSFRNEITPGNFI 213

Query: 203 GGDLSHEFIV--LADTGETQVFCSKDFMDFPIPSENTDF----DDIISLNSIVEQWTAPY 256
                 E +        ET       +++       T      +++       E+ +  Y
Sbjct: 214 FRTREFEQMEIEFFLKEETAYDVFDKYLNQIQNWLVTCCGLDLNNLRKHEHPREELS-HY 272

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           +  +            E   ++ R      +       S      F     + +   +  
Sbjct: 273 SKKTIDFEYNFLHGFSELYGIAYRTNYDLSVH---MNLSKKDLTYFDEETKQKYIPHVIE 329

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSV------APFKISLINIKAHDQVCRDACEKIYA 370
             +G  R++ A++  +   + +   +               I +       ++  E +Y 
Sbjct: 330 PSVGVERLLYAILTEATFIEKLANDEERILMNLKYDLAPYKIAVMPLVNKLKEKAEAVYN 389

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK---FVSDSKVEIKHRLTGIRE 427
           ++  +   V +D+ G  IG ++   D +G    + +         D    I+ R T  ++
Sbjct: 390 KILDLNVSVTFDNSG-SIGKRYRRQDAIGTIYCITIDYDSFGDEHDPTFTIRERNTMAQK 448

Query: 428 DMSLEEVINYASHR 441
            + L E+  Y S +
Sbjct: 449 RIKLSELSLYLSQK 462


>gi|170595002|ref|XP_001902209.1| Met-10+ like-protein [Brugia malayi]
 gi|158590243|gb|EDP28945.1| Met-10+ like-protein [Brugia malayi]
          Length = 693

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 141/373 (37%), Gaps = 46/373 (12%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           LP  ++ +D +  +I  E N  GA ++S+P L + ++W ++GR+ ++  EM  L+D+ ++
Sbjct: 341 LPCCRRIIDKLIKVIETELNAIGAYKISMPILGAKEMWQKAGRWSAFKSEMFHLSDKTNQ 400

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
                PTHEE++T +      ++    F  Y +  + + +            F + +  +
Sbjct: 401 VYCLQPTHEEMVTKLVAEQTANHFYGNFDNYILHSRNQIKSVLVTKKHFVLYFYLLNNGT 460

Query: 163 FDLTP----------EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
             +                  +            RL +    +RA++G IGGD+SHE+ +
Sbjct: 461 ATIGELREAVYPLMLYQMGPKFRDETTYQRIFHDRLDINFYIVRADAGNIGGDMSHEYHL 520

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
              T    +                   ++   + ++++   P                 
Sbjct: 521 PCKTSRDSIAYCSKC-------------NLGMNHDLLKRGEKP-------------CCCS 554

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE-S 331
           +        IE+ H F  G  ++    A           + M  +GIG   ++A +I   
Sbjct: 555 KEYISIVETIEIAHTFQLGDLFTKKFGAKHNDQP-----LIMNCFGIGIGLLIAVIINSM 609

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG---CDVFWDDM-GEQ 387
           S   K +    ++ PFK+++I          +  E I   LS++     D+F DD     
Sbjct: 610 SPSTKALRLLYALIPFKVAVILPNKTQSETMEFAENIIGHLSQISSVQNDIFVDDRLDNS 669

Query: 388 IGSQFAVADLLGF 400
           IG +   A  LG 
Sbjct: 670 IGRRLLTAANLGI 682


>gi|282162818|ref|YP_003355203.1| glycyl-tRNA synthetase [Methanocella paludicola SANAE]
 gi|282155132|dbj|BAI60220.1| glycyl-tRNA synthetase [Methanocella paludicola SANAE]
          Length = 580

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 40/92 (43%), Gaps = 1/92 (1%)

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +        I   L + G  + +D+ G  IG ++   D +G P  + +    + D  V
Sbjct: 480 SKEPLAGKARAIALDLKEKGFFIEYDESG-TIGKRYRRNDEVGTPFSITIDFDTMEDDTV 538

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            I+ R T  +  + ++++ +      +++RP+
Sbjct: 539 TIRDRDTMSQVRVPVKDLSSVLGELLASDRPL 570



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 1/67 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + G Y + P+G      +    R       G  E+  PT+    ++  SG    +   M 
Sbjct: 27  ASGFYDYGPMGATLKRKIEDAWRRLYCVGEGFYEIEAPTIGVEAIFEASGHVGGFADPMT 86

Query: 95  RLADRND 101
                 +
Sbjct: 87  TCQKCKE 93


>gi|168179549|ref|ZP_02614213.1| histidyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|182669807|gb|EDT81783.1| histidyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
          Length = 415

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 54/397 (13%), Positives = 105/397 (26%), Gaps = 11/397 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    R      G  E+  P  +  +L+        D   KEM    D+  +++   
Sbjct: 20  WQYLENKFRNIAADFGCREIRTPVFEYTELFQRGVGETTDVVQKEMYTFEDKAGRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F          P   Y      R E   +    R R+        F    
Sbjct: 80  PEGTSPAVRAFVEGRLFNETQPTKMYYFTPVMRYENVQKG---RLRQHHQFGIEIFGAKD 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                    + V   +     G++         P      +E +    +      CS   
Sbjct: 137 ASVDAEVISIPVRIYKELGVEGVELNINSIGC-PKCRKTYNEALKKYLSKNYDKLCSTCK 195

Query: 228 MDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEKLFDSLPENKRVSARG--I 282
             F           + +   IV+               H E L + L            I
Sbjct: 196 TRFDKNPLRILDCKVDTCKEIVKDAPIILDYICGECKEHFESLKNYLDVLNINYKIDPFI 255

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
             G  +Y  T +   +      A G+  Y+     G     V   +              
Sbjct: 256 VRGLDYYSKTVFEFIIDDITICAGGRYDYLIEEIGGPSMPAVGFGMGMERLLLTLQEKTI 315

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            +       + +       +    K+   L         D MG+ + +Q   A+ +G   
Sbjct: 316 EIPEEAYVDLYLGNMGDKAKLEVLKLAKELRDRHIKCEIDHMGKSVKAQMKYANKIGAKY 375

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +++G + ++  K  IK    G +  ++++++     
Sbjct: 376 SMVLGEEELNTGKATIKRMEDGEQISVNIKDIDTLIK 412


>gi|288801299|ref|ZP_06406753.1| glycine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331682|gb|EFC70166.1| glycine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 513

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 61/355 (17%), Positives = 111/355 (31%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM  ++D  +K  +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 198 FSTEMGSVSDAANKIYLRPETAQGIFVNYLNVQKTGRMKLPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F  +P      +NK     ++    LG  +   R           H
Sbjct: 258 IFRMREFEQMEMQYFV-SPGTELEHFNKWKELRMKWHQALGFGAENYRFHD--------H 308

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E +       T V     F                            +     VH+   F
Sbjct: 309 EKLAHYANAATDVEFKMPF---------------------------GFKEVEGVHSRTNF 341

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     K         G    +    +      +             S            
Sbjct: 342 DLSQHEK-------FSGKSIKYFDPQTNESYVPYVIETSIGVDRMFLSIMC--HAYTEEA 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P ++AP K+ ++ +   D    +   +I   L     +  +++    I
Sbjct: 393 LENGETRVVLKLPAALAPVKLCVMPLVKKD-GLPEKAREIVDSLK-FHFNCHYEEKD-SI 449

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  V V    + D+KV ++ R T  +E + + E+ N    + S
Sbjct: 450 GKRYRRHDAIGTPYCVTVDHDTLKDNKVTLRFRDTMEQERVDISELRNIIEDKVS 504


>gi|329769592|ref|ZP_08260997.1| histidyl-tRNA synthetase [Gemella sanguinis M325]
 gi|328838544|gb|EGF88151.1| histidyl-tRNA synthetase [Gemella sanguinis M325]
          Length = 426

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 56/417 (13%), Positives = 125/417 (29%), Gaps = 16/417 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   K    +   +R+  +     E+  P  +S +L+        D   KEM    D+ 
Sbjct: 13  LPEESKKWQYIEEKLRKISDSFCYEEIRTPMFESTELFSRGVGDTTDIVQKEMYTFMDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNL-PFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ++++   P         +  +    + + P   Y +   FR E + +    R R+F+   
Sbjct: 73  NRSITLRPEGTAGTVRSYIENKLFAKTIQPQKLYYVGPMFRYERKQKG---RYRQFVQYG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRI--------FHRLGLKSIPMRAESGPIGGDLSHEF 210
                + +P+      +  +  Y            + LG            +        
Sbjct: 130 VEVIGEESPKIDAEVISLAYNIYKSFGIENIKVSINSLGNPEERQAYNEALVKHFEPRIN 189

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
               D            +D  + +E+    +   L   + + +  Y A    H + L   
Sbjct: 190 EFCEDCNNRLYKNPMRILDCKVDAEHELIKNAPKLLEYLGEESKQYFAEVLRHLDALGVK 249

Query: 271 L-PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              ++  V          F            T  G    +  +++         +  A+ 
Sbjct: 250 YEVDHNLVRGLDYYTHTAFEIMIDNPEVELKTLCGGGRYNGLIKLLDGPEDKKGIGFALS 309

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                         +         + A  +   DA  K+   L   G  V  D   +++ 
Sbjct: 310 IERLLLALESENIELPIDDTIDAFVVAMGEKAGDAGVKLTNDLRLAGYKVQSDYFDKKMK 369

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +Q  +AD       +I+G   + + +  +K   T  +E++  + ++ Y   +    +
Sbjct: 370 AQMKLADRYNAKFSIIIGDSELENGQYVVKDMKTYDQENVEFDNIVKYLEEKLKGEK 426


>gi|153940828|ref|YP_001392333.1| histidyl-tRNA synthetase [Clostridium botulinum F str. Langeland]
 gi|166227962|sp|A7GHS3|SYH_CLOBL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|152936724|gb|ABS42222.1| histidine--tRNA ligase [Clostridium botulinum F str. Langeland]
 gi|295320326|gb|ADG00704.1| histidine--tRNA ligase [Clostridium botulinum F str. 230613]
          Length = 415

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 58/406 (14%), Positives = 114/406 (28%), Gaps = 29/406 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    R      G  E+  P  +  +L+        D   KEM    D+  +++   
Sbjct: 20  WQYLENKFRNIAADFGCREIRTPVFEYTELFQRGVGETTDVVQKEMYTFEDKAGRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F          P   Y      R E   +    R R+        F    
Sbjct: 80  PEGTSPAVRAFVEGRLFNETQPTKMYYFTPVMRYENVQKG---RLRQHHQFGIEIFGAKD 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                    + V   +     G++         P      +E +    +      CS   
Sbjct: 137 ASVDAEVISIPVGIYKELGVEGVELNINSIGC-PKCRKTYNEALKKYLSKNYDKLCSTCK 195

Query: 228 MDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEKLFDSLP------ENKRVS 278
             F           + +   IV+               H E L   L       +     
Sbjct: 196 TRFDKNPLRILDCKVDTCKEIVKDAPIILDYICDECKDHFESLKSYLDVLDIKYKVDPFI 255

Query: 279 ARGIEV--GHIFYFGTKYSLPM---SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            RG++     +F F              +   +     +    +G+G  R++  + E + 
Sbjct: 256 VRGLDYYSKTVFEFIIDDITICAGGRYDYLIEEIGGPSMPAVGFGMGIERLLLTLQEKAI 315

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           +          A   + L NI       +    K+   L         D MG+ + +Q  
Sbjct: 316 EI------PEEAYVDLYLGNIGDK---AKLEVLKLAKELRDRHIKCEIDHMGKSVKAQMK 366

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            A+ +G    +++G + ++  KV +K    G + ++ ++E+     
Sbjct: 367 YANRIGAKYSMVLGEEELNTGKVSLKRMEDGKQIEVDIKEIDTLIK 412


>gi|312973245|ref|ZP_07787417.1| histidyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|310331840|gb|EFP99075.1| histidyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|323184425|gb|EFZ69800.1| histidyl-tRNA synthetase [Escherichia coli 1357]
          Length = 414

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 54/418 (12%), Positives = 115/418 (27%), Gaps = 23/418 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLAD 98
            +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM    D
Sbjct: 3   DYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFED 62

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRSREF 155
           RN  ++   P            H   Y      +Y     + +   + R R       E 
Sbjct: 63  RNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEV 122

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
                   D         + +            + +G            +     H+  +
Sbjct: 123 FGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHKEKL 182

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSL 271
             D            +D   P      +D  +L   +++ +   +A    +         
Sbjct: 183 DEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAYT 242

Query: 272 PENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
              + V         +F       G++ ++     + G   +       + G        
Sbjct: 243 VNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERL 302

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDM 384
            ++                   +  I + A     + A   +  RL     G  +  +  
Sbjct: 303 VLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNHG 355

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +     
Sbjct: 356 GGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLL 413


>gi|294794000|ref|ZP_06759137.1| histidine--tRNA ligase [Veillonella sp. 3_1_44]
 gi|294455570|gb|EFG23942.1| histidine--tRNA ligase [Veillonella sp. 3_1_44]
          Length = 423

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 61/415 (14%), Positives = 117/415 (28%), Gaps = 15/415 (3%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLA- 97
            +LP        +   +RE     G  E+  P  +   L++       D   KEM     
Sbjct: 11  DFLPEQMIHWHYIEQRMREICKVYGFNEIRTPAFEETKLFLRGIGETTDVVQKEMYTFTT 70

Query: 98  -DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D    +    P +       +  +    +     +Y +   FR +        R R+F 
Sbjct: 71  GDDGGSSFTLRPENTASAVRAYLENKVYGKEGLTKWYYMGPMFRHDKPQAG---RYRQFH 127

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
              A                M V  L+ F    L                  + I   + 
Sbjct: 128 QFGAEVLGSQSPVVDSEVICMVVQLLKDFGLKDLNVEVNSVGCPTCRPVYREKLIAFFEP 187

Query: 217 GETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            + Q+   C +     P+   +   +   SL+    +           H E+L   L   
Sbjct: 188 KKEQLCSDCQERLYKNPLRILDCKNETCKSLSVGAPEIHEHLCEECHDHFEELKTYLSAA 247

Query: 275 KRVSA------RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      RG++      F  +Y+   + +     G+   +     G     +  A+
Sbjct: 248 NVQYTLNPRLVRGLDYYTKTAFEVQYTPLGAQSAVAGGGRYDGLVEELDGPHTPAIGFAM 307

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                            P     + + A     +    KI   L      V  D  G+ +
Sbjct: 308 GMERLLLALEKQNLLPEPTVEPSVFVVALGDAAKVEAFKICQALHDEYITVEMDGQGKSM 367

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +Q   A+ +     +I+G   ++  +  I+   T  +E +SL+ V    +    
Sbjct: 368 KAQLKYANKINAKYVIILGDDELARKEAIIRFMDTSEQETVSLDTVAERITSLVK 422


>gi|22125253|ref|NP_668676.1| histidyl-tRNA synthetase [Yersinia pestis KIM 10]
 gi|21958124|gb|AAM84927.1|AE013738_4 histidine tRNA synthetase [Yersinia pestis KIM 10]
          Length = 424

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 66/422 (15%), Positives = 133/422 (31%), Gaps = 31/422 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        + +I+++  +  G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTAIWQRIESILKQVLSGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FDDRNGESLTLRPEGTAGCARAGIEHGLLYNQEQRLWYI-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH------ 208
               A  F L  P+            +  +     +K       S     D         
Sbjct: 126 HQLGAEVFGLPGPDIDAELILLTARWWRALGIFEHVKLELNSIGSLAARADYREALVAFL 185

Query: 209 EFIVLADTGETQVFCSKD---FMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHN 264
           E  V     + +     +    +D   P      DD   L+  +++ +   +A   ++ +
Sbjct: 186 EQHVEVLDEDCKRRMYSNPLRVLDSKNPDVQQLLDDAPKLSDYLDEESKQHFAGLCELLD 245

Query: 265 EK-----LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
           +      + + L        R +        G + ++     + G              +
Sbjct: 246 KASIPYTVNERLVRGLDYYNRTVFEWVTHSLGAQGTVCAGGRYDGLVEQLGGRATPAVGF 305

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +G  R+V  V   + D +     D+                      E +   L  +  
Sbjct: 306 AMGLERLVLLVQAVNADFQVPATVDAYVISSGEGA-----QSAAMLLAESLRDALPTLKI 360

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
              +   G  +  QF  AD  G  + +++G   V+  +V +K    G +E ++  +V   
Sbjct: 361 MTNY--GGGNVKKQFTRADKWGARVALMLGESEVAAQQVVVKDLRNGEQETLAQADVAAR 418

Query: 438 AS 439
            +
Sbjct: 419 LA 420


>gi|238763551|ref|ZP_04624512.1| Histidyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
 gi|238698183|gb|EEP90939.1| Histidyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
          Length = 424

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 58/420 (13%), Positives = 124/420 (29%), Gaps = 27/420 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +  I+++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTAIWQRIEGILKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHS----YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
               A  F L              + + +     H     +     ++     +    F+
Sbjct: 126 HQLGAEVFGLQGPDIDAELILLTARWWRALGISEHVQLELNSIGSLDARADYREALVTFL 185

Query: 212 VLA------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHN 264
                    D            +D   P      +D   L+  ++  +   +A   ++ +
Sbjct: 186 EQHVDVLDEDCKRRMYSNPLRVLDSKNPDVQLLLNDAPKLSDYLDDESKQHFAGLCELLD 245

Query: 265 EKLFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +         + V         +F       G + ++     + G    +      +  +
Sbjct: 246 QASIPYTVNERLVRGLDYYNRTVFEWVTNSLGAQGTVCAGGRYDGL--VEQLGGRATPAV 303

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G    +  ++             +     +      A         E++   L  +    
Sbjct: 304 GFAMGLERLVLLVQAVNPDFQVPATIDVYLISSGEGAQS-AAMQLAERLRDDLPTLKLMT 362

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +   G     Q   AD  G  + +I+G   V+  +V +K    G +E ++  +V    +
Sbjct: 363 NY--GGGNFKKQITRADKWGARIALILGESEVAAQQVVVKDLRKGEQETLAQADVAARLA 420


>gi|170754518|ref|YP_001782690.1| histidyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
 gi|229558648|sp|B1IMD8|SYH_CLOBK RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|169119730|gb|ACA43566.1| histidyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
          Length = 415

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/397 (14%), Positives = 107/397 (26%), Gaps = 11/397 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    R      G  E+  P  +  +L+        D   KEM    D+  +++   
Sbjct: 20  WQYLENKFRNIAADFGCREIRTPVFEYTELFQRGVGETTDVVQKEMYTFEDKAGRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F          P   Y      R E   +    R R+        F    
Sbjct: 80  PEGTSPAVRAFVEGRLFNETQPTKMYYFTPVMRYENVQKG---RLRQHHQFGIEIFGAKD 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                    + V   +     G++         P      +E +    +      CS   
Sbjct: 137 ASVDAEVISIPVGIYKELGVEGVELNINSIGC-PKCRKTYNEALKKYLSKNYDKLCSTCK 195

Query: 228 MDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEKLFDSLP--ENKRVSARGI 282
             F           + +   IV+               H E L   L   + K      I
Sbjct: 196 TRFDKNPLRILDCKVDTCKEIVKDAPIILDYICDECKDHFESLKSYLDVLDIKYKVDPFI 255

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
             G  +Y  T +   +      A G+  Y+     G     V   +              
Sbjct: 256 VRGLDYYSKTVFEFIIDDITICAGGRYDYLIEEIGGPSMPAVGFGMGIERLLLTLQEKAI 315

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            +       + +       +    K+   L         D MG+ + +Q   A+ +G   
Sbjct: 316 EIPEEAYVDLYLGNMGDKAKLEVLKLAKELRDRHIKCEIDHMGKSVKAQMKYANRIGAKY 375

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +++G + ++  KV +K    G + ++ ++E+     
Sbjct: 376 SMVLGEEELNTGKVSLKRMEDGKQIEVDIKEIDTLIK 412


>gi|156083086|ref|XP_001609027.1| glycyl-tRNA synthetase [Babesia bovis T2Bo]
 gi|154796277|gb|EDO05459.1| glycyl-tRNA synthetase, putative [Babesia bovis]
          Length = 733

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 81/485 (16%), Positives = 156/485 (32%), Gaps = 93/485 (19%)

Query: 45  LGQKALDNVNAIIREEQNR--TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           LG  +LD+V   IRE       G  E+S P     +L  E+    + G +  +    N  
Sbjct: 240 LGNMSLDDVENFIRENNITSPIG-NELSKP--YPFNLMFET----TIGPKSRQKGGINSV 292

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
             +   T + +  +  +    +   +P    QI L FR+E+ PR G++R REFLM +   
Sbjct: 293 VYLRPETAQGIFVNFAKLLESNGGKMPLAAAQIGLGFRNEISPRNGLLRVREFLMAEVEY 352

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRL---------------------------------- 188
           F      +   Y++     L +  +                                   
Sbjct: 353 FVHPKNKTHARYDEFKHIILSLLPKDVQEKGESNLIRISVEDAVNRGIIANEALGYFLAR 412

Query: 189 -------------GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                        GL+     ++          +  +L   G  +V    D M + + + 
Sbjct: 413 TSLFLEKCGIFNEGLRFRQHMSDEMAHYACDCWDAEILTSYGWIEVVGHADRMAYDLQAH 472

Query: 236 NT----------DFDDIISLNSIVEQWTAPYAATSDVHNEKL------FDSLPENK---- 275
           +            + + I+++ +V  +       +      +        + PE      
Sbjct: 473 SKATNIQLNASQRYPEPITVDKVVPNYNRSLIGKTFKDKHVMLLEILNNMAHPEAMKLEE 532

Query: 276 -----RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
                 ++      GH+F    +     S        +     +     G  R++  ++E
Sbjct: 533 ELSATGMTTIKAADGHVFEVTREMLSFKSVKAV-VCEETFTPAVIEPSFGIGRLIFCILE 591

Query: 331 SSHDGKGII----------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
            S+  +                 +AP K  L+ + + D V +    KI   L  VG    
Sbjct: 592 HSYRVRPAQDQQEERTYIAIKPMLAPIKCCLLPLSSKD-VFQPMISKIQNNLDGVGLSYK 650

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D  G  IG ++A  D +G P  + V  + ++D  V ++ R +  +  + +E V    S 
Sbjct: 651 IDCTGASIGKRYARMDEIGIPYAITVDFQSLNDGTVTVRERDSMQQVRIDVEMVCCLISD 710

Query: 441 RFSNN 445
                
Sbjct: 711 LLRAR 715



 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAII 57
           SK  + +L+ N    E     L+ R         I+  + G+Y + P G      +  + 
Sbjct: 90  SKSLVDLLKANKASCE----NLLKRRFFYANSFDIYGGAAGLYDYGPPGCALKVELENLW 145

Query: 58  REEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           R+        +E+S P +    +   SG  D +   M+      + 
Sbjct: 146 RQHFVIFDEMLEVSCPCITPYAVLKASGHIDRFTDLMVTDVVNGEC 191


>gi|52425975|ref|YP_089112.1| histidyl-tRNA synthetase [Mannheimia succiniciproducens MBEL55E]
 gi|81691321|sp|Q65R83|SYH_MANSM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|52308027|gb|AAU38527.1| HisS protein [Mannheimia succiniciproducens MBEL55E]
          Length = 427

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/417 (13%), Positives = 124/417 (29%), Gaps = 19/417 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V + +R      G  E+ +P +++  L+  + G   D   KEM    DR+
Sbjct: 15  LPTETPVWQWVESKVRSTLASYGYSEIRMPIVENTPLFARAIGEVTDVVSKEMFTFNDRD 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++++   P            H   Y      +Y   +   +  +        +  +    
Sbjct: 75  NESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYMGPMFRYERPQKGRYRQFHQAGVEVFG 134

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------ 214
            +             +++       H     +     E+         EF+         
Sbjct: 135 IANAEIDAELIILTARLWKELGIEQHVTLQLNSIGSLEARANYRSALVEFLQQYVGLMNE 194

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT--APYAATSDVHNE----KLF 268
           +  E  +      +D    +     ++   L   ++  +        + + N     ++ 
Sbjct: 195 EEKERLLKNPLRILDTKNEALQQALNNAPKLLDYLDDDSREHFARLCAILDNVGISYEIN 254

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             L        + +        G + ++     + G    +      + G+G    +  +
Sbjct: 255 PKLVRGLDYYNKTVFEWVTTALGAQGTICGGGRYDGLV--EQLGGHATCGVGFAMGLERL 312

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           I    +    I     A     +   +          EK+ + L            G   
Sbjct: 313 ILLVQEVNKAIPLPQSAVDIYLIFAGENTASAAFRLAEKVRSELP--HLRTMMHCSGGNF 370

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRFSN 444
             QF  AD  G  + +++G   V + +V +K  L G  ++ ++LE VI++    F  
Sbjct: 371 KKQFKRADKSGAKIALVLGESEVQNQQVVVKDLLGGAEQQTVALEAVIDHLKTSFKE 427


>gi|283786130|ref|YP_003365995.1| histidyl-tRNA synthetase [Citrobacter rodentium ICC168]
 gi|282949584|emb|CBG89202.1| histidyl-tRNA synthetase [Citrobacter rodentium ICC168]
          Length = 424

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/422 (13%), Positives = 116/422 (27%), Gaps = 23/422 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            E         D         + +       +   L          +         E  V
Sbjct: 130 AEAFGLQGPDIDAELIMLTARWWRALGIAEHVSLELNSIGSQEARANYRDALVAFLEQHV 189

Query: 213 LADTGETQVFCSKD---FMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
                + +     +    +D   P      +D   L   ++  +   +A    +      
Sbjct: 190 DKLDEDCKRRMYSNPLRVLDSKNPQVQALLNDAPQLGDYLDDDSREHFAGLCRLLEAAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTSSLGSQGTVCAGGRYDGLVEQLGGRPTPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFTADPVVDIYLVASGADTQSAAMTLAERLRDELPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + +++G   V+   V +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARIALVLGESEVAAGTVVVKDLRSGEQTAVAQDSVATHLRTL 422

Query: 442 FS 443
            +
Sbjct: 423 MA 424


>gi|218696141|ref|YP_002403808.1| histidyl-tRNA synthetase [Escherichia coli 55989]
 gi|254782330|sp|B7LCQ4|SYH_ECO55 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|218352873|emb|CAU98672.1| histidyl tRNA synthetase [Escherichia coli 55989]
          Length = 424

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/421 (12%), Positives = 116/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QF  AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFTRADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|88808090|ref|ZP_01123601.1| histidyl-tRNA synthetase [Synechococcus sp. WH 7805]
 gi|88788129|gb|EAR19285.1| histidyl-tRNA synthetase [Synechococcus sp. WH 7805]
          Length = 421

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 117/408 (28%), Gaps = 22/408 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP   +   NV A+ RE   R G  E+  P L+  +L+        D  GKEM  
Sbjct: 9   GMVDLLPEQTRRWQNVEAVAREHFRRAGLEEIRTPLLEVTELFARGIGEATDVVGKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +++    P     +      H    + +   +Y     FR E        R R+F
Sbjct: 69  FLDRGERSCTLRPEGTASVVRAAVQHGLLSQGVQKLWYS-GPMFRYERPQAG---RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
                    ++   S                        + LG         +  +    
Sbjct: 125 HQIGVECLGVSSARSDVEVIALAWDLLADLGLEHVKLEINTLGTSEDRQAYRNTLVTWLE 184

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                + AD+ +         +D    S     +D  +L + +   +A           +
Sbjct: 185 ERSDQLDADSQKRLSTNPLRILDSKNQSTQALLNDAPTLQAALSAESASRFEHVQALLTQ 244

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           L      N R+       GH  +  T   L   AT     G   Y  +     G      
Sbjct: 245 LSIPFTHNTRLVRGLDYYGHTAFEITSDQLGAQATV---CGGGRYDGLVQQLGGPATPAV 301

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                      ++   S A   + L+N     +        +   L   G  V  D  G 
Sbjct: 302 GWALGMERLLLMLGNASDAAPDVYLVNRGDQAEGV---ALGLARDLRNAGLAVELDGSGA 358

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEE 433
             G QF  AD    P  +++G   V    V IK     G    +   +
Sbjct: 359 AFGKQFKRADRCKAPSALVLGDGEVDQGIVRIKRLQGDGEEHTLPWND 406


>gi|291618410|ref|YP_003521152.1| HisS [Pantoea ananatis LMG 20103]
 gi|291153440|gb|ADD78024.1| HisS [Pantoea ananatis LMG 20103]
          Length = 424

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/407 (14%), Positives = 113/407 (27%), Gaps = 21/407 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        V  +++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDFLPADTAIWQRVEDVLKSVLASYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMR 151
             DRN +++   P            H   Y      +Y +   FR E       R     
Sbjct: 70  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWY-MGPMFRYERPQKGRYRQFHQI 128

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             E         D         + K            + +G            +     H
Sbjct: 129 GVEVFGLQGPDIDAELIMLNARWWKALGIADHVRLELNSIGSPEARANYRDALVAFLEQH 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL--NSIVEQWTAPYAATSDVHNE- 265
           +  +  D            +D   P   T  +D   L     VE         + + +  
Sbjct: 189 KEALDEDCKRRMYSNPMRVLDSKNPDIQTLLNDAPQLGDYLDVESREHFDGLRALLDDAG 248

Query: 266 ---KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               +   L        R +        G++ ++     + G   +         G    
Sbjct: 249 IAYTVNQRLVRGLDYYNRTVIEWVTDSLGSQGTVCGGGRYDGLVEQLGGRATPGVGFAMG 308

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                ++  + + +      +       + + +          EK+   L ++     + 
Sbjct: 309 MERLVLLVQAVNPEFE---PARNVDVYVIASGQGVQSAAMQLAEKLRDHLPEMKLMTNF- 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             G     QFA AD  G  + +++G       +V IK    G ++ +
Sbjct: 365 -GGGNFKKQFARADKWGARVALVLGEDEQKAGQVVIKDLRNGEQQTL 410


>gi|171778546|ref|ZP_02919673.1| hypothetical protein STRINF_00525 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282769|gb|EDT48193.1| hypothetical protein STRINF_00525 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 425

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/409 (14%), Positives = 111/409 (27%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              + A+ RE   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYIEAVARETFKKYNYSEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   F  +         P   Y I   FR E        R REF       F  
Sbjct: 80  PEGTAPVVRSFVENKLFAPEVQKPVKMYYIGSMFRYERPQAG---RLREFHQVGVECFGS 136

Query: 165 LTPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             P     +                    + LG  +         I         + AD+
Sbjct: 137 ANPATDVETIAMAYQLFQTLGIKDVTLHLNTLGSAASRAAYRQALIDYLTPMRDKLSADS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A  ++        + +  
Sbjct: 197 QRRLDENPLRVLDSKEKEDKVAVENAPSILDYLDEESQAHFDAVREMLETLNIPYVIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T            A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITTVDKSELT--ICAGGRYDSLVEYFDGPETPGFGFGLGLERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   K     I    Q       ++   +   G     D +G +I +QF  A
Sbjct: 315 ILDKQGIELPVEKEMDAYIAVLGQGANIKALELVQAIRNQGFSAERDYLGRKIKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D       + +G   +   +V +K+  T     +S  ++    +   + 
Sbjct: 375 DAFNAKTVITLGESEIEAGQVTVKNNKTREEVSVSFADIETNFAEILAK 423


>gi|332656335|ref|YP_004301636.1| histidyl-tRNA synthetase [Tetragenococcus muriaticus]
 gi|326324678|dbj|BAJ84503.1| histidyl-tRNA synthetase [Tetragenococcus muriaticus]
          Length = 428

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/416 (14%), Positives = 120/416 (28%), Gaps = 22/416 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G    LP   +    V  I R+  N+ G   +  P  ++ +++        D   K+M  
Sbjct: 11  GTVDILPGEIEVWQKVEKIARDTFNQFGYRGIRTPIFENYNVFARNVGDTSDIVEKQMYD 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             DR  + +   P         +  +         P+  Y +   FR E        R R
Sbjct: 71  FDDRGGRRLALRPEGTAGTVRAYVENKLFGPEYPKPYKVYYMGPMFRYERPQSG---RQR 127

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGG 204
           +F      + +                              + LG K          I  
Sbjct: 128 QFTQIGCEALNSESPQIDVEVISEALQFFKQLGINDLKLTVNTLGDKETRDAYHKALIDY 187

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              +   +  D+ E         +D    ++     +  S+   +  ++A Y        
Sbjct: 188 LKPYYDQLSDDSKERMYKNPLRVLDSKDETDQKIVANAPSILDSLSDYSAKYFEEVKKLL 247

Query: 265 EKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           +KL     E      RG++     IF      S      +    G   Y  + S   G  
Sbjct: 248 DKLNIKY-EIDSDMVRGLDYYTQTIFEI-MSDSDVFGGGYVTVCGGGRYNGLISQLGGPD 305

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVF 380
                          ++  ++         ++   + D    +   ++  ++ K G    
Sbjct: 306 EGGIGYGIGVERLLLLVQKENPDFTPKYGPDVFFASADDEGDELAFEVLDKIRKNGVSAD 365

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +    ++GSQ   A         ++G K V + K E+    +   + +S++E  +
Sbjct: 366 KNYQDVKVGSQIKEAIRRKTRYYAVIGKKEVEEGKFELSKVDSDQTQTVSVKEFED 421


>gi|260887819|ref|ZP_05899082.1| histidine--tRNA ligase [Selenomonas sputigena ATCC 35185]
 gi|260862425|gb|EEX76925.1| histidine--tRNA ligase [Selenomonas sputigena ATCC 35185]
          Length = 421

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/403 (14%), Positives = 122/403 (30%), Gaps = 9/403 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
             +V  +IRE   R G  E+  P  +  +L++       D   KEM    DR ++++   
Sbjct: 20  WTHVEKVIRELCARYGYREIRTPIFEHTELFLRGIGETTDVVEKEMYTFTDRGERSLTLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P +   +   +  +     +     + I   FR +           +F ++     +   
Sbjct: 80  PENTASVVRSYLQNKLYAADALVKLFYIGSMFRYDRPQAGRYREFHQFGVEALGEENPAV 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +         F+  L +       +     +  P+  +   EF       E    C   F
Sbjct: 140 DAEIIVLAVEFLRALGLQELKLHLNSVGCPKCRPVYRERLQEFFRPH-LEELCTDCRSRF 198

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSARG 281
              P+   +   +   +L     + T        VH  ++   L       E      RG
Sbjct: 199 ERNPLRLLDCKNEHCHALAEGAPRITDCLCDECRVHFTEVQSYLTAAGIPFELDANLVRG 258

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           ++      F  KY+   + +     G+   +     G     +  AV             
Sbjct: 259 LDYYTKTAFEVKYTPLGAQSAVAGGGRYDGLVEEVGGPPTPGIGFAVGLERVLLALEKQE 318

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
                 +   + + A  +  +    K+   L         D  G  + +Q   A+     
Sbjct: 319 LLPEELEAVDVFVVALGEAAQIPAFKLLHELRAAKLSAAMDFAGRSMKAQMKQANKKNAR 378

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              I+G   V ++   +K   T  ++ ++L++ +        N
Sbjct: 379 FVAILGEDEVKEASALLKDMKTSEQKKLALKDFVPALCVEVKN 421


>gi|227431712|ref|ZP_03913742.1| histidyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352536|gb|EEJ42732.1| histidyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 433

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 123/419 (29%), Gaps = 21/419 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSY 89
           I Q  KG    LP       +V A+ R         E+  P  ++ +++  S     D  
Sbjct: 5   IFQRPKGTADLLPQKTVQWQHVEAVARVLFGDYNFKEIRTPLFENFEVFSRSAGDTSDVV 64

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRF 147
            KEM    D+ D+ +   P     +   +  +         P+  + +   FR E     
Sbjct: 65  TKEMYDFHDKGDRHIALRPEGTAGVVRAYVENKLYGPEFDKPYKAFYMGPMFRYERPQAG 124

Query: 148 GVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGG 204
              R R+F    A  F    P         +   +  +  +    +I    +  S     
Sbjct: 125 ---RFRQFHQIGAEIFGSDSPALDAEVIAMVIDFFQTLGLKNLKVAINTLGDKESRDAYR 181

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               +++      E            P+   ++         +         +  S  H 
Sbjct: 182 QALIDYLKPH-FDELSADSQARLEKNPLRVLDSKDPRDQLFVADAPSILDFLSEKSTKHW 240

Query: 265 EKLFDSLP------ENKRVSARGIEV--GHIFY-FGTKYSLPMSATFKGADGKDHYVQMG 315
           EKL D L       +      RG++     IF    T  SL  +AT  G       V+  
Sbjct: 241 EKLQDILTALNLDFDIDTTMVRGLDYYNDTIFEIMTTDESLKGAATIAGGGRYSGLVEEF 300

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
                        +E   D              +    +   D        KI   +   
Sbjct: 301 GGPETPGVGFGIGVERLLDLLQAQNVAPTEEQNLDFYVVNIGDTTDV-IATKIVQAVRSF 359

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G     D + +   +QF  AD       + +G + + +  V IK+   G ++ + L E+
Sbjct: 360 GYVAERDYLSKSAKAQFKAADRHHAKYVITIGEQELEEQIVNIKNMTNGEQKSVQLSEL 418


>gi|327398592|ref|YP_004339461.1| Histidyl-tRNA synthetase [Hippea maritima DSM 10411]
 gi|327181221|gb|AEA33402.1| Histidyl-tRNA synthetase [Hippea maritima DSM 10411]
          Length = 410

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 64/407 (15%), Positives = 123/407 (30%), Gaps = 17/407 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP   K    +  + RE     G  E+  P L+   L+  S     D   KEM  
Sbjct: 6   GFKDILPQDIKKWQKLEKVARETLESFGYKEIRTPILEKTSLFARSVGETTDIVEKEMYI 65

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D++ +++   P         F  +          +Y     FR E   +  + +  + 
Sbjct: 66  FLDKSGESVTLRPEGTAGTVRAFIDNHLENYPFKKYYYI-GPMFRYERPQKGRLRQFHQI 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            ++     +   +      +K+ +  L I       +     +  P       E+  L  
Sbjct: 125 GIEVFGIDNPAVDAEVVLVDKIMLDKLNISDLRIEINNIGCPDCRPEYSKRLKEYFQLH- 183

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--- 272
            GE    C +     P+   +   +    +     +       +   H EK+ ++L    
Sbjct: 184 KGELCDDCRRRLDRNPLRILDCKNNTCSQIAKGAPKIIEFVCDSCKNHYEKVKNNLTALG 243

Query: 273 ---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E      RG++    F F        +     A G+   +     G        + I
Sbjct: 244 IEFEENPHLVRGLDYYTKFVFEIITDKLGAQGTVSAGGRYDNLVEQLGG-----KPTSGI 298

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
             +   + +I        +     I   D+        I  +LS  G  V+ +     + 
Sbjct: 299 GFASGCERLINLMDEDETQGIDYYIANLDEDV--YAMDIARKLSLTGRSVYVEYESRSLK 356

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           S    AD +     VIVG    +   + +K      +E+  + + I 
Sbjct: 357 SMLKKADKMNARFVVIVGENEKNKGIIIVKDMEDSTQEEKQVNKFIE 403


>gi|45442516|ref|NP_994055.1| histidyl-tRNA synthetase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597156|ref|YP_071347.1| histidyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|108808312|ref|YP_652228.1| histidyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|108811423|ref|YP_647190.1| histidyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|145599495|ref|YP_001163571.1| histidyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149365338|ref|ZP_01887373.1| histidyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|162420576|ref|YP_001605023.1| histidyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165926037|ref|ZP_02221869.1| histidyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937162|ref|ZP_02225727.1| histidyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008604|ref|ZP_02229502.1| histidyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212589|ref|ZP_02238624.1| histidyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399422|ref|ZP_02304946.1| histidyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167421392|ref|ZP_02313145.1| histidyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423817|ref|ZP_02315570.1| histidyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170023540|ref|YP_001720045.1| histidyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186896251|ref|YP_001873363.1| histidyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|218929938|ref|YP_002347813.1| histidyl-tRNA synthetase [Yersinia pestis CO92]
 gi|229838457|ref|ZP_04458616.1| histidyl tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895159|ref|ZP_04510335.1| histidyl tRNA synthetase [Yersinia pestis Pestoides A]
 gi|229899024|ref|ZP_04514168.1| histidyl tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901680|ref|ZP_04516802.1| histidyl tRNA synthetase [Yersinia pestis Nepal516]
 gi|270489875|ref|ZP_06206949.1| histidine--tRNA ligase [Yersinia pestis KIM D27]
 gi|294504560|ref|YP_003568622.1| histidyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|29427530|sp|Q8ZCT6|SYH_YERPE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|81691698|sp|Q668A0|SYH_YERPS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|122980231|sp|Q1CK90|SYH_YERPN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123245686|sp|Q1C5I9|SYH_YERPA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166228631|sp|A4TMT6|SYH_YERPP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229470706|sp|B2K9P9|SYH_YERPB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229470707|sp|A9R801|SYH_YERPG RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229470708|sp|B1JS06|SYH_YERPY RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|45437381|gb|AAS62932.1| histidyl-tRNA synthetase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590438|emb|CAH22078.1| histidyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|108775071|gb|ABG17590.1| histidyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|108780225|gb|ABG14283.1| histidyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|115348549|emb|CAL21489.1| histidyl-tRNA synthetase [Yersinia pestis CO92]
 gi|145211191|gb|ABP40598.1| histidyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149291751|gb|EDM41825.1| histidyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|162353391|gb|ABX87339.1| histidyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165915025|gb|EDR33637.1| histidyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922241|gb|EDR39418.1| histidyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992986|gb|EDR45287.1| histidyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206520|gb|EDR51000.1| histidyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960881|gb|EDR56902.1| histidyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051926|gb|EDR63334.1| histidyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057987|gb|EDR67733.1| histidyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169750074|gb|ACA67592.1| histidyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186699277|gb|ACC89906.1| histidyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|229681609|gb|EEO77703.1| histidyl tRNA synthetase [Yersinia pestis Nepal516]
 gi|229687969|gb|EEO80041.1| histidyl tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694823|gb|EEO84870.1| histidyl tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701921|gb|EEO89944.1| histidyl tRNA synthetase [Yersinia pestis Pestoides A]
 gi|262362445|gb|ACY59166.1| histidyl-tRNA synthetase [Yersinia pestis D106004]
 gi|262366548|gb|ACY63105.1| histidyl-tRNA synthetase [Yersinia pestis D182038]
 gi|270338379|gb|EFA49156.1| histidine--tRNA ligase [Yersinia pestis KIM D27]
 gi|294355019|gb|ADE65360.1| histidyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|320016014|gb|ADV99585.1| histidyl tRNA synthetase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 424

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/422 (15%), Positives = 133/422 (31%), Gaps = 31/422 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        + +I+++  +  G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTAIWQRIESILKQVLSGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH------ 208
               A  F L  P+            +  +     +K       S     D         
Sbjct: 126 HQLGAEVFGLPGPDIDAELILLTARWWRALGIFEHVKLELNSIGSLAARADYREALVAFL 185

Query: 209 EFIVLADTGETQVFCSKD---FMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHN 264
           E  V     + +     +    +D   P      DD   L+  +++ +   +A   ++ +
Sbjct: 186 EQHVEVLDEDCKRRMYSNPLRVLDSKNPDVQQLLDDAPKLSDYLDEESKQHFAGLCELLD 245

Query: 265 EK-----LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
           +      + + L        R +        G + ++     + G              +
Sbjct: 246 KASIPYTVNERLVRGLDYYNRTVFEWVTHSLGAQGTVCAGGRYDGLVEQLGGRATPAVGF 305

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +G  R+V  V   + D +     D+                      E +   L  +  
Sbjct: 306 AMGLERLVLLVQAVNADFQVPATVDAYVISSGEGA-----QSAAMLLAESLRDALPTLKI 360

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
              +   G  +  QF  AD  G  + +++G   V+  +V +K    G +E ++  +V   
Sbjct: 361 MTNY--GGGNVKKQFTRADKWGARVALMLGESEVAAQQVVVKDLRNGEQETLAQADVAAR 418

Query: 438 AS 439
            +
Sbjct: 419 LA 420


>gi|325298934|ref|YP_004258851.1| glycyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
 gi|324318487|gb|ADY36378.1| glycyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
          Length = 514

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 70/395 (17%), Positives = 130/395 (32%), Gaps = 57/395 (14%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD-SYGKEMLRLADRNDKAMIYGP 108
           L+ +  II +E       E+  P +     W E  +++  +  EM   AD + K  +   
Sbjct: 167 LNELRQIILDE-------EIVCP-ISGTKNWTEVRQFNLMFSTEMGSTADGSMKVYLRPE 218

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   QI   FR+E+  R  + R REF   +   F   P 
Sbjct: 219 TAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFFVK-PG 277

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                + K   + L+    LG      R         L+H      D      F  K   
Sbjct: 278 TELEWFKKWKETRLKWHKALGFGDDHYRYHDHE---KLAHYANAATDIEFLMPFGFK--- 331

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                 E         L+   +             NE     + E      R        
Sbjct: 332 ----EVEGIHSRTNFDLSQHEKFSGKSIKYFDPEINESYTPYVIETSIGVDR-------- 379

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                +   MSA++                          +E+      +  P ++AP K
Sbjct: 380 ----MFLSVMSASYTEEK----------------------LENGETRVVLKLPAALAPVK 413

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ +   D    +   +I   L        +D+    IG ++   D +G P  V V  
Sbjct: 414 LAVMPLVKKD-GLPEKAREIMDDLK-FHFHCQYDEKD-SIGKRYRRQDAIGTPYCVTVDH 470

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + D+ V +++R T  +E +++ ++ N  + + S
Sbjct: 471 QTLEDNCVTLRNRDTMEQERVAIADLNNIIADKVS 505


>gi|241889466|ref|ZP_04776766.1| histidyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
 gi|241863862|gb|EER68244.1| histidyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
          Length = 426

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/412 (13%), Positives = 122/412 (29%), Gaps = 20/412 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   +RE        E+  P  +S +L+        D   KEM    D+ ++++   
Sbjct: 20  WQYIEGKLREISKNFCYEEIRTPMFESTELFSRGVGDTTDIVQKEMYTFQDKGNRSLTLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNL-PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDL 165
           P         +  +    + + P   Y +   FR E + +    R R+F+        + 
Sbjct: 80  PEGTAGTVRSYIENKLFAKTIQPQKLYYVGPMFRYERKQKG---RYRQFVQYGVEVIGEE 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA---DTGETQVF 222
           +P+      +  +  Y          SI       P      +E +V        E    
Sbjct: 137 SPKIDAEVISLAYNIYRMFGIENIKVSINSLG--NPEERQAYNEALVKHFEPRINEFCED 194

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PEN 274
           C+      P+   +   D    L     +        S  +  ++   L         ++
Sbjct: 195 CNNRLYKNPMRILDCKVDAGHELIKSAPKLLDYLGEESKQYFAEVLKHLDALGVKYEIDH 254

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
             V          F            T  G    +  +++         +  A+      
Sbjct: 255 NLVRGLDYYTHTAFEIMIDNPEVELKTLCGGGRYNGLIKLLDGPEDKKGIGFALSIERLL 314

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                    +       + + A  +   +A  K+   L   G  V  D   +++ +Q  +
Sbjct: 315 LALESENIELPIDDTIDVFVVAMGEEASNAGVKLTNDLRLAGYSVQNDYFDKKMKAQMKI 374

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           AD       +I+G   +    + +K   +  +E + LE +++Y   +    +
Sbjct: 375 ADRYNAKYSIIIGQSELESGTLVVKDMKSFEQEIIKLENIVDYLQEKLRGEK 426


>gi|300856530|ref|YP_003781514.1| histidyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
 gi|300436645|gb|ADK16412.1| histidyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
          Length = 416

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/403 (11%), Positives = 103/403 (25%), Gaps = 16/403 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    +      G  E+  P  +  +L+        D   KEM    D+  +++   
Sbjct: 20  WHYLEDKFKNIAASYGYREIRTPVFEYTELFERGVGETTDVVQKEMYTFQDKAGRSLTLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
                     F          P   +      R E   +  +    +F ++         
Sbjct: 80  AEGTSPAVRAFVESSLYNEVQPTKLFYFTPVLRYENVQKGRLREHHQFGIEAFG--AENA 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                  +     Y  +  +    +I              +E +           C    
Sbjct: 138 SLDAEVISLAMRVYKELGVKGIELNINSIGC--ATCRKKYNEALKKFLKENYDALCDTCK 195

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLPENKRVSARGIEVGH 286
             F           + S   IV+   AP        + K  F+SL +         ++  
Sbjct: 196 SRFSKNPMRILDCKVESCKEIVKD--APLMIDYLCDDCKEHFESLQKYLSAVNIEFKINP 253

Query: 287 IFYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
           +   G  Y           D               +G  ++ A       +   +   ++
Sbjct: 254 LIVRGLDYYTKTVFEIINNDITICGGGRYDYLIEEVGGPKMPAVGFGMGIERTLLTLEEN 313

Query: 344 VAPFK---ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
                      + + A     +     +  +L +       D     + ++   A+ +G 
Sbjct: 314 KIEIPNRPYIDLYVGAMGDDAKLKALNLVNQLREKNVRCECDHTNRSVKAEMKYANKIGA 373

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              VI+G   +     + K    G + ++ LEE+ +  S    
Sbjct: 374 RFTVILGDNELECGIAKFKRMEDGNQFEIKLEEL-DKISDLIR 415


>gi|302348085|ref|YP_003815723.1| threonyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
 gi|302328497|gb|ADL18692.1| threonyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
          Length = 467

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/435 (15%), Positives = 131/435 (30%), Gaps = 47/435 (10%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
              GI  +   G      ++ I+     R G      P + S  L+  SG    Y + M 
Sbjct: 35  LGHGIPLFTIGGGYLRSALSQILVNFHARRGYYIAETPIVSSGALFELSGHMGYYKQNMF 94

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSH---IKSYRNLPFTFYQIQLKFRDELRPR-FGVM 150
                  K     P +      IF S     ++  +LPF  +++    R E     +G++
Sbjct: 95  VFQ-VEGKEYAVKPMNCPFHILIFLSEVTRHRNKVSLPFKVFEVGRVHRLEPSGSVYGLL 153

Query: 151 RSREFLMKDAYSFDLTPEGSK---HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           RSR F   DA+   L  +        +++M   Y ++F+     S      S      + 
Sbjct: 154 RSRSFTQDDAHIITLGKDAVNVITSVFDEMITIYSKLFNVEMNPSTVTLRLSLSDKSKIG 213

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +F+   D  E          DF   +            +  E   A Y    DV  +  
Sbjct: 214 TDFMGTKDEWEKA-------EDFLRGALEAIASKYGLRYTAAEGEAAFYGPKIDVLVKLG 266

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                +  ++     +    F    ++ +  +A      G +    +    IG++     
Sbjct: 267 SGQEGKEWQLGTIQFD----FNLPRRFKIFDAAKEL--YGSEDVYIIHRALIGSIERFLG 320

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
               ++ G+       +    +++      D+   D    ++  L   G    +   GE 
Sbjct: 321 AYLDNYKGRLPFVLAPLQFAVLAIKAGDEFDKRVEDFALSLHRALVAKGFRSGY---GET 377

Query: 388 IGSQFAVADLLGF---------PLQVI-VGSKFVSDSKVEIKHRLTGIREDMSLE----- 432
                    L G          P  ++ VG + +    V +     G R   S+      
Sbjct: 378 -----TRTSLSGDVRLLESGPKPAAIVYVGRREIEKGSVTVSIYEGGSRRQTSVNASDPL 432

Query: 433 ---EVINYASHRFSN 444
              + I   + R   
Sbjct: 433 GAADAIESLASRLEE 447


>gi|330838612|ref|YP_004413192.1| Histidyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
 gi|329746376|gb|AEB99732.1| Histidyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
          Length = 420

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/403 (14%), Positives = 122/403 (30%), Gaps = 9/403 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
             +V  +IRE   R G  E+  P  +  +L++       D   KEM    DR ++++   
Sbjct: 19  WTHVEKVIRELCARYGYREIRTPIFEHTELFLRGIGETTDVVEKEMYTFTDRGERSLTLR 78

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P +   +   +  +     +     + I   FR +           +F ++     +   
Sbjct: 79  PENTASVVRSYLQNKLYAADALVKLFYIGSMFRYDRPQAGRYREFHQFGVEALGEENPAV 138

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +         F+  L +       +     +  P+  +   EF       E    C   F
Sbjct: 139 DAEIIVLAVEFLRALGLQELKLHLNSVGCPKCRPVYRERLQEFFRPH-LEELCTDCRSRF 197

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSARG 281
              P+   +   +   +L     + T        VH  ++   L       E      RG
Sbjct: 198 ERNPLRLLDCKNEHCHALAEGAPRITDCLCDECRVHFTEVQSYLTAAGIPFELDANLVRG 257

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           ++      F  KY+   + +     G+   +     G     +  AV             
Sbjct: 258 LDYYTKTAFEVKYTPLGAQSAVAGGGRYDGLVEEVGGPPTPGIGFAVGLERVLLALEKQE 317

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
                 +   + + A  +  +    K+   L         D  G  + +Q   A+     
Sbjct: 318 LLPEELEAVDVFVVALGEAAQIPAFKLLHELRAAKLSAAMDFAGRSMKAQMKQANKKNAR 377

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              I+G   V ++   +K   T  ++ ++L++ +        N
Sbjct: 378 FVAILGEDEVKEASALLKDMKTSEQKKLALKDFVPALCVEVKN 420


>gi|89895178|ref|YP_518665.1| hypothetical protein DSY2432 [Desulfitobacterium hafniense Y51]
 gi|219669605|ref|YP_002460040.1| histidyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
 gi|123091744|sp|Q24US1|SYH_DESHY RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|254782327|sp|B8FQR7|SYH_DESHD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|89334626|dbj|BAE84221.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539865|gb|ACL21604.1| histidyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 424

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/407 (13%), Positives = 113/407 (27%), Gaps = 15/407 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
             ++   IR+     G  E+  P  ++ +L+        D   KEM    D+ D+++   
Sbjct: 20  WQDLEEQIRKICREYGYQEIRTPIFEATELFQRGVGETTDIVNKEMYTFLDKGDRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  +       P   Y I   FR E        R R+F         +  
Sbjct: 80  PEGTASVCRAYVENKLHGGPQPVKLYYIGPMFRYERPQSG---RFRQFHQFGVEVLGVDK 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPM---RAESGPIGGDLSHEFIVLADTGETQVFCS 224
                    +           GL+            P       EF+        +  C 
Sbjct: 137 PMVDAEVITLVWDLYSRLGLKGLEVHVNSVGCPSCRPEHKKKLQEFLAPRQEQLCKD-CQ 195

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA----- 279
             F   P+   +        +                 H ++L   L   + V       
Sbjct: 196 SRFEKNPLRILDCKNPTCQEITQGAPTTLDTLCEECAEHFKELQSLLSAAEVVYKVNPRL 255

Query: 280 -RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RG++      F        + +     G+   +     G     +  A+          
Sbjct: 256 VRGLDYYRKTAFEVLVEDIGAQSAICGGGRYDGLVQEVGGPPTPGIGFAMGMERVLAARK 315

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +            + + A     +     I +RL K G     D +G  + +Q   AD +
Sbjct: 316 LAQGEQEGEGKEYLMLVALGDQAQREGFAIVSRLRKQGMPAGIDLLGRSLKAQLKAADRV 375

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
                 I+G + +    + ++    G + ++ L++       R+  +
Sbjct: 376 QAHYAAILGEEELHKGIIILRDLRLGEQVELPLQDFEEVVWKRYKED 422


>gi|282880410|ref|ZP_06289121.1| glycine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281305766|gb|EFA97815.1| glycine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 514

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 112/363 (30%), Gaps = 64/363 (17%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM  L+D  +K  +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 198 FSTEMGSLSDATNKIYLRPETAQGIFVNYLNVQKTGRMKLPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      + +     +     LG  +   R            
Sbjct: 258 IFRMREFEQMEMQFFVK-PGTELEWFKRWKELRMAWHQALGFGAENYRFHDH-------- 308

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                                                     +  A YA  +     K+ 
Sbjct: 309 ------------------------------------------EKLAHYANAATDIEFKMP 326

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               E + V +R            K+S      F     + +   +    IG  R+  +V
Sbjct: 327 FGFKEVEGVHSRTNFDLSQHE---KFSGKSIKYFDPETNESYVPYVIETSIGVDRMFLSV 383

Query: 329 IESSH--------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +  S+        D + ++   +        +      +   +   +I   L K   +  
Sbjct: 384 MCHSYQEEELEGGDKRIVLRLPAALAPVKCAVMPLVRKEGLPEKAREIVN-LLKFHFNTS 442

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +D+    IG ++   D +G P  V V    + D+KV ++HR T  +E + + E+  +   
Sbjct: 443 YDEKD-SIGKRYRRQDAVGTPYCVTVDFDTLKDNKVTLRHRDTMQQERIDISELCAHIED 501

Query: 441 RFS 443
           + S
Sbjct: 502 KVS 504


>gi|224026479|ref|ZP_03644845.1| hypothetical protein BACCOPRO_03236 [Bacteroides coprophilus DSM
           18228]
 gi|224019715|gb|EEF77713.1| hypothetical protein BACCOPRO_03236 [Bacteroides coprophilus DSM
           18228]
          Length = 514

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/395 (16%), Positives = 126/395 (31%), Gaps = 57/395 (14%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD-SYGKEMLRLADRNDKAMIYGP 108
           L+ +  II +E       E+  P +     W E  +++  +  EM   AD   K  +   
Sbjct: 167 LNELRQIILDE-------EIVCP-ISGTKNWTEVRQFNLMFTTEMGSTADGAMKVYLRPE 218

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   QI   FR+E+  R  + R REF   +   F   P 
Sbjct: 219 TAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFFVK-PG 277

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                + K   + L+    LG      R           HE +       T +     F 
Sbjct: 278 TELEWFKKWKETRLKWHKALGFGDDHYRYHD--------HEKLAHYANAATDIEFLMPF- 328

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                                      +     +H+   FD     K         G   
Sbjct: 329 --------------------------GFKEVEGIHSRTNFDLSQHEK-------FSGKSI 355

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
            +           +             S    A       +E+      +  P ++AP K
Sbjct: 356 KYFDPEINESYTPYVIETSIGVDRMFLSIMSAAY--CEETLENGETRVVLKLPAALAPVK 413

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ +   D    +   +I   L        +D+    IG ++   D +G P  + +  
Sbjct: 414 LAVMPLVKKD-GLPEKAREIMNDLK-FHFHCQYDEKD-SIGKRYRRQDAIGTPYCITIDH 470

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + D+ V +++R T  +E +++ E+ N  + + S
Sbjct: 471 QTLEDNCVTLRNRDTMKQERVAISELNNIIADKVS 505


>gi|194476950|ref|YP_002049129.1| histidyl-tRNA synthetase [Paulinella chromatophora]
 gi|171191957|gb|ACB42919.1| histidyl-tRNA synthetase [Paulinella chromatophora]
          Length = 422

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 62/410 (15%), Positives = 118/410 (28%), Gaps = 16/410 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G+   LP        +    R    R+G  E+  P L+  +L+        D   KEM  
Sbjct: 9   GMVDLLPEHTPLWQFIEETARTHFRRSGVNEIRTPLLEPTELFARGIGESTDVVNKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR D++    P     +      H    +  P  F+     FR E        R R+F
Sbjct: 69  FFDRGDRSCTLRPEGTASIVRAALQHNLLAQG-PQRFWYSGPMFRYERPQAG---RQRQF 124

Query: 156 LMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVL 213
                       P     + +  +   + +  +     +      S  I      E  + 
Sbjct: 125 HQIGLELHGYSDPRSDVEAISIAWDLLMDLGVKRLALELNTLGSISDRILYRQKLETWLS 184

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP- 272
               E            P+   ++       L       +   +A S      + + L  
Sbjct: 185 DHFNELDEDSRARVSSNPLRILDSKIPSTKELLKKAPLLSNELSAESSERFAAVREGLAN 244

Query: 273 -----ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                +      RG++  +        S  + A      G  +   +   G      +  
Sbjct: 245 LGIPFKINPYLVRGLDY-YSHTAFEIISDQLGAQSTVCGGGRYDGLVEQLGGHNTPAIGW 303

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
            +        I+  +           I    +V       +  +L   G  V  D     
Sbjct: 304 ALGVERLVLLIMQGNIPIKIPSPDFYIINKGKVAEAIALTLARQLRNSGMIVELDCSKSA 363

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED-MSLEEVIN 436
              QF  AD       +I+G + V+ +++ IK+  T I    +++E+ ++
Sbjct: 364 FSKQFKRADRSNALQAIILGEEEVARNQIRIKNLRTNISNRSLNIEDFLD 413


>gi|187935133|ref|YP_001885234.1| histidyl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|187723286|gb|ACD24507.1| histidine--tRNA ligase [Clostridium botulinum B str. Eklund 17B]
          Length = 417

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/402 (15%), Positives = 114/402 (28%), Gaps = 14/402 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+     G  E+  P  +  +L++       D   KEM    D+ ++++   
Sbjct: 22  WHYVENTFRDVVKTYGIREIRTPMFEHTELFLRGVGDTTDIVQKEMYTFNDKGNRSVTLK 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSF 163
           P         F  +       P   + I   FR E       R       E       + 
Sbjct: 82  PEGTAPAVRAFIENRLFNEAQPTKLFYITPAFRYENVQKGRLRQFHQCGIEMFGSKEPTM 141

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           D+                    H   L     RA+          E     +       C
Sbjct: 142 DVEAIKVAMDTLSKLGLKSLSLHINNLGCPTCRAKYNEALKKFLEE-----NYENLCETC 196

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARG 281
              F   P+   +        +     Q         + H  K+ + L       V  +G
Sbjct: 197 KSRFEKNPMRILDCKERKCNEITKNAPQILDYVCEECETHFNKVKEYLDILGISYVVDQG 256

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           I  G  +Y  T + +          G+   +     G     V  A+ E           
Sbjct: 257 IVRGLDYYTKTIFEIVNDDFTVCGGGRYDKLIEELGGPEMPAVGFAIGEERIIMTLENEG 316

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +    +  + I A  +  ++   KI   L K+G     + MG  I ++   A+ +G  
Sbjct: 317 IEIPNENMVDLYIGARGEAEKNYAFKIAHDLRKLGVKCEINHMGRSIKAEMKYANKIGSK 376

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              I+G   + ++++ +K    G    +SL+  I        
Sbjct: 377 FTTILGEDELQNNQINLKRMEDGEIFTLSLDN-IEEIQKIVK 417


>gi|262280927|ref|ZP_06058710.1| histidyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
 gi|262257827|gb|EEY76562.1| histidyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
          Length = 430

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/421 (9%), Positives = 116/421 (27%), Gaps = 23/421 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP    A   +   +    +  G  ++ +P ++   L+  +     D   KEM    D+ 
Sbjct: 14  LPTQTVAWRRLEQYLASLMDAYGYQQIRLPIIEQTGLFKRTIGDATDIVEKEMYTFFDKG 73

Query: 101 DKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           +         E     +         R      + +   FR E   +    +  +F ++ 
Sbjct: 74  NPPESLTLRPEGTAGCVRAMLEHNLLRGATPRVWYMGPMFRYEKPQKGRYRQFHQFGVET 133

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGE 218
                   +             + +  ++ L+ +    A+      +    F+       
Sbjct: 134 FGVATPDIDAELILLTARLWKRMGVADKVQLELNTLGEADERTEYRNALVAFLNEHKDAL 193

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------- 271
            +    +     P+   ++  +    +     +        S  H ++L D L       
Sbjct: 194 DED-SQRRLTTNPLRILDSKIESTQKILENAPKLHDFLKEDSLDHFKQLQDYLTAAGIQF 252

Query: 272 ------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                         + +        G++ ++     + G  G+       S       + 
Sbjct: 253 VINQKLVRGLDYYNKTVFEWTTTALGSQGTVCAGGRYDGLVGQLKGKPDQSVPAVGFAMG 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDD 383
              +    +              +          +     E++  +L        +    
Sbjct: 313 MERLLLLLEQVEQAEVIRDCEVFLVAEPAYQTKALI--LAEQLRDQLEAANSSIRIKT-G 369

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               + SQ   AD  G    +I+G +     ++ +K   T  +  +++ +++ +   +F+
Sbjct: 370 SQGSMKSQMKKADQAGALFALILGEREWDAQQLAVKELATAEQSQVAIADLVPFLIQKFT 429

Query: 444 N 444
            
Sbjct: 430 K 430


>gi|324113008|gb|EGC06984.1| histidyl-tRNA synthetase [Escherichia fergusonii B253]
 gi|325496453|gb|EGC94312.1| histidyl-tRNA synthetase [Escherichia fergusonii ECD227]
          Length = 424

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/421 (12%), Positives = 116/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                   +  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQPAAMALAERLRDELPGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QF  AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFGRADKWGARIAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|294946602|ref|XP_002785126.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239898583|gb|EER16922.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 106

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +  + C+ IY  L   G  V  DD   +  G +F   +L G PL++ VG+K +    V
Sbjct: 26  KDMIGEKCKSIYEDLEANGVRVVLDDREDKTPGYKFNHWELKGVPLRIEVGAKDLEKGVV 85

Query: 417 EIKHRLTGIR 426
               R TG +
Sbjct: 86  TFVRRNTGRK 95


>gi|269926347|ref|YP_003322970.1| histidyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790007|gb|ACZ42148.1| histidyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 439

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 62/438 (14%), Positives = 121/438 (27%), Gaps = 46/438 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   +LP        V     E   R G + +  P+L+ A+ +      ++    M +  
Sbjct: 12  GFRDFLPESMALRKYVIRTFEEIFERYGFLPLETPSLEYAETFEGKSSTEAETL-MYKFV 70

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D   + +         +  +   H      +PF  Y I   +R E   +    R REF  
Sbjct: 71  DAGGRRVGLRYDLTVPLARVVGMHPD--LPMPFKRYHIAPVWRAERPQKG---RYREFWQ 125

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            D          +                 +G K   +      I   ++       +  
Sbjct: 126 CDVDIVGSDEPAADAEI---LAIISDCLSAVGFKEYRVLINHRKILSAMARVAGASPEQA 182

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV-----HNEKLFDSLP 272
                               +   +       ++  A      D      H E+L +  P
Sbjct: 183 VHVYRAIDRLSKVGADGVRQELIQLGLSPDSSDRLIALINIEGDADTVLSHLERLLEDQP 242

Query: 273 ENKRVSA--------------------------RGIEVGHIFYFGTKYSLPMSATFKGAD 306
           E  +                             RG++      F T    P   +  G  
Sbjct: 243 EGIQAINELRSILNLLSNYNVNMNSYLIQPSLARGLDYYTGAVFETVVDEPKVGSVTGGG 302

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
             D  V + +         +  +E   D    +   +        + +   D  C  +  
Sbjct: 303 RYDELVGIFAGKKIPTVGTSLGLERIIDVLEELGLMTPPRVSA-DVFVTVFDTSCIASSI 361

Query: 367 KIYARLSKVGCDVFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           +I A L + G          + G    Q   A  LG P  +I G   +++++V ++   +
Sbjct: 362 QIAANLRRKGIKTELYL--GKPGSLRKQLTYASRLGIPWVIIAGPDELANNEVTLRDMQS 419

Query: 424 GIREDMSLEEVINYASHR 441
           G ++ + L E+  +    
Sbjct: 420 GEQKRLPLHELPEHIKSL 437


>gi|326803471|ref|YP_004321289.1| histidine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651350|gb|AEA01533.1| histidine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 432

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 67/429 (15%), Positives = 132/429 (30%), Gaps = 30/429 (6%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MI +  KG    LP   +    +    R+   +    E+  P  +S DL+        D 
Sbjct: 1   MIQKP-KGTVDILPGQVEIWQAIEKTARDIMAKYRFNEIRTPMFESYDLFARGVGETTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   F  +         P+  Y I   FR E    
Sbjct: 60  VTKEMYDFYDKGDRHIALKPEGTAPIVRAFIENKLYGPEHIKPYKVYYISPMFRYERPQG 119

Query: 147 FGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---- 201
               R R+F       FD  T      +    +     +  +     I    ++      
Sbjct: 120 G---RQRQFHQLGVEVFDGKTALSDVETIALAWEILESLGVKDLKLVINSLGDNEARLNY 176

Query: 202 ----IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPY 256
               I      E  +  D+           +D   P +     D  ++ + + E     +
Sbjct: 177 REALINYLKPFEEELSEDSKTRLYQNPLRVLDSKDPKDKEIVKDAPNILDYLSEASKERF 236

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-------FGTKYSLPMSATFKGADGKD 309
                +          ++  V         IF        FG + ++    ++ G   + 
Sbjct: 237 EQVQSLLASLNIPYQIDSNMVRGLDYYQDTIFEIMTNSEVFGAETTICGGGSYSGLVKEL 296

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              +    G G    +  +I      K  +  ++     +  I      Q       +I 
Sbjct: 297 SEGREDVPGFGFAIGMERLILLLEAQKSDLAVENPLDIYMVTI-----GQSVVSQALQIV 351

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L + G +V +D    +   QF  AD  G    + +G   +++  + +K+  +G     
Sbjct: 352 QALRRQGLNVEFDLNQRKPKKQFRDADRHGAAYTLTLGESELAEKNINVKNMTSGQERHF 411

Query: 430 SLEEVINYA 438
           ++++VI + 
Sbjct: 412 AIDDVIEHF 420


>gi|303277857|ref|XP_003058222.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460879|gb|EEH58173.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 683

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 79/289 (27%), Gaps = 23/289 (7%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                     +         +     +                      ++E     +  
Sbjct: 387 LQHEMAHYAEDCWDAEIECTYGWIECVGLADRSAFDLKAHSDKSKVELTAYER--YDEPV 444

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVHNEKLFDSLPENKR 276
            ++VF  +        +   D   +      + Q  A   AA  D        +    K 
Sbjct: 445 ISEVFVCEPNKKDMGKAFKKDAKAVTDALMALSQEDAFALAAKIDADGAATLATAAGEKE 504

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           +    +               +    +   G++    +     G  R++  + E S   +
Sbjct: 505 ILPGMV--------------SVRMETQKLSGRNFTPSVIEPSFGIGRIMYCMFEHSFYVR 550

Query: 337 GIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
           G     +V  F   +  IK       +D       EK+   LS  G     D     +G 
Sbjct: 551 GDDEQKTVFKFSPLIAPIKLAIFPLVNDSGMNAHAEKLSRELSSEGVSTKLDTTATTVGK 610

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++A  D LG P  V V  + + D  V ++ R +  +  +   +V+    
Sbjct: 611 RYARNDELGIPFAVTVDHRTLQDGTVTVRERDSCDQVRVLSADVLALVK 659



 Score = 53.2 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     N+ A  R+      G +E+  P++    +   SG  + +   M++
Sbjct: 98  AGLYDYGPPGCAVKSNLQAFWRQHFVLNEGMLELECPSVTPEVVLQASGHVEKFTDLMVK 157

Query: 96  LADRNDK 102
                D 
Sbjct: 158 DVVTKDC 164


>gi|304373259|ref|YP_003856468.1| Prolyl-tRNA synthetase 2 [Mycoplasma hyorhinis HUB-1]
 gi|304309450|gb|ADM21930.1| Prolyl-tRNA synthetase 2 [Mycoplasma hyorhinis HUB-1]
          Length = 480

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 80/177 (45%), Gaps = 6/177 (3%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           E      + ++ G   Y    +S      FK    +       S+G+ + R++  +I + 
Sbjct: 215 EAMMKDGKALQSGTSHYLAQNFSKSFDIVFKNDKNEFENPYQTSWGV-STRLIGGLIMTH 273

Query: 333 HDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            D +G+I P  +AP ++ ++ +    + +     ++I+ +L  +   +  D    Q G +
Sbjct: 274 GDDRGVILPPKIAPIQVDILELFAIKNPIVSIVTKQIFEKLK-IKFTLRIDSTDNQPGYK 332

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---INYASHRFSNN 445
            + +++LG PL++ VG + +  ++V I  R T  +  + +E+V   + +      NN
Sbjct: 333 ASRSEVLGTPLRIEVGPRDLEKNQVTIVRRDTLEKHQVEVEKVFEKVEFLLEEIQNN 389



 Score = 59.4 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 6/154 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G   + P      + +   + +   R     +  P L     +  E    + +  E+L +
Sbjct: 35  GTIYFKPNSFALWEKIQENLNKYFKRENVKNVYFPLLIPQSFITKEKSHVEGFAPELLTI 94

Query: 97  ADRNDK----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               +K     +   PT E +  D F+  + +   LP  + Q     R E +     +R+
Sbjct: 95  THAGEKKLSEELYVRPTSEVLFADCFKKELANNNQLPLIYNQWTSVLRWE-KNTNPFLRT 153

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            EFL ++ ++     E +K    KM   Y     
Sbjct: 154 TEFLWQEGHTVHSNAEEAKRLAKKMIGIYKDFIE 187


>gi|152971375|ref|YP_001336484.1| histidyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|330007780|ref|ZP_08306077.1| histidine--tRNA ligase [Klebsiella sp. MS 92-3]
 gi|150956224|gb|ABR78254.1| histidyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|328535324|gb|EGF61809.1| histidine--tRNA ligase [Klebsiella sp. MS 92-3]
          Length = 414

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/418 (12%), Positives = 115/418 (27%), Gaps = 23/418 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLAD 98
            +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM    D
Sbjct: 3   DYLPGETALWQRIEGSLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFED 62

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRSREF 155
           RN  ++   P            H   Y      +Y     + +   + R R       E 
Sbjct: 63  RNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYVGPMFRHERPQKGRYRQFHQIGAEV 122

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
                   D         + +            + +G            +         +
Sbjct: 123 FGLQGPDIDAELIMLTARWWRELGISEHVSLELNSIGSLEARANYRDALVAYLEQFTDKL 182

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA------TSDVHNEK 266
             D+           +D   P      +D  +L   +++ +  + A              
Sbjct: 183 DEDSKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDEESKAHFAGLCALLDDAGIRYT 242

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           +   L        R +        G++ ++     + G   +         G        
Sbjct: 243 VNQRLVRGLDYYNRTVFEWVTTSLGSQGTVCAGGRYDGLVEQLGGRATPGVGFAMGLERL 302

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDM 384
            ++                   +  I + A     + A  ++  ++     G  +  +  
Sbjct: 303 VLLV-------QAVNPEFKADPVVDIYLVASGTDTQSAAMRLAEQVRDALPGVKLMTNHG 355

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G     QFA AD  G  + ++VG   ++D  V +K   +G +  ++ E V  +     
Sbjct: 356 GGNFKKQFARADKWGARVALVVGESEIADGNVVVKDLRSGEQTTVTQESVAAHLRTLL 413


>gi|117618684|ref|YP_856296.1| histidyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166227941|sp|A0KJ45|SYH_AERHH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|117560091|gb|ABK37039.1| histidyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 425

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/418 (13%), Positives = 122/418 (29%), Gaps = 40/418 (9%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               V  I+R+     G  E+ +P ++   L+  + G   D   KEM    DRN  ++  
Sbjct: 21  VWQKVEQILRQVVASYGYSEVRMPIVEQTHLFKRAIGEVTDVVEKEMYTFEDRNGDSLSL 80

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y      +Y +   FR E   +    +  +F ++        
Sbjct: 81  RPEGTASCVRAGIEHGLLYNQERRMWY-MGPMFRHERPQKGRYRQFHQFGVELFGINGPD 139

Query: 167 PEGSKHSYNKMFVSYLRIFHRLG-LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
            +               I   +    +   ++       D    ++      +      +
Sbjct: 140 IDAELIMLTHRLWRLFGISEHVTLQLNTLGQSSERAAYRDALVAYLEQY-KDQLDEESQR 198

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSA 279
                P+   ++  + + ++     +        S  H E L   L       E      
Sbjct: 199 RMYSNPLRVLDSKDEKVQAILVGAPRLFDHLGEESLAHFEGLKRLLESAGIQYEVNERLV 258

Query: 280 RGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIE 330
           RG++     +F       G + ++     + G              + +G  R+V     
Sbjct: 259 RGLDYYNLTVFEWVTNSLGAQGTVCAGGRYDGLVEQLGGQPTPAVGFAMGMERLV----- 313

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM------ 384
                       +        + +    +    A  ++  RL     D   D        
Sbjct: 314 ----LMLETLELNGDIRPAVDVYLAMVGEGTEQAGFQLAERLR----DALPDLRLMSHCG 365

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHR 441
           G     Q   AD  G  + +I+G   V + ++ IK+ R    ++ ++++  I   + +
Sbjct: 366 GGNFKKQLKRADKSGAAIALILGETEVQNGEITIKYLRGQAEQQTVTVDAAIALLAAK 423


>gi|296084982|emb|CBI28397.3| unnamed protein product [Vitis vinifera]
          Length = 149

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 4/108 (3%)

Query: 5   KYFLPILQENPR-DAEIASHKLMLRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQN 62
           K +L   +E  R D       L L +  I  +   G+  W P G      +    ++   
Sbjct: 17  KAYLHFKEEAKRRDHRRLGIDLDLFS--IQDEAGGGLVFWHPKGAIVRHIIEDSWKKIHI 74

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
             G   +  P +  ADLW  SG  D Y + M       D+     P +
Sbjct: 75  EHGYDLLYTPHVARADLWKTSGHLDFYRENMYSQITIEDELYQLRPMN 122


>gi|156339099|ref|XP_001620080.1| hypothetical protein NEMVEDRAFT_v1g223493 [Nematostella vectensis]
 gi|156204426|gb|EDO27980.1| predicted protein [Nematostella vectensis]
          Length = 401

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/396 (14%), Positives = 124/396 (31%), Gaps = 29/396 (7%)

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           +          W  SG  D++   ++   D   R    ++     E++     +   K+ 
Sbjct: 6   IDASIFMHPTTWKASGHVDAFSDPLIDNKDSKKRYRADVLIEEYAEKINIKAQKEITKAK 65

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                 F + +    +E   +  + +  E L + A S +        S  +         
Sbjct: 66  TRFGDAFNEEEFVTTNERV-KGYLQQKNEILQRLARSLENDDLADVKSLIEELGIACPES 124

Query: 186 HRLGL----KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF-----MDFPIPSEN 236
                    +   M A       D + +  +  +T +       +      M  P     
Sbjct: 125 GSKNWTEVRQFNLMFATKIGASADTAMDLYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQ 184

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           T   +        E+  A YA  +            E + + +R            +YS 
Sbjct: 185 TGLGEENYRFHDHEKL-AHYANAAADIEFDFPFGFKELEGIHSRTDFDLKAHE---QYSG 240

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAA---------VIESSHDGKGIIWPDSVAPF 347
                F       +   +    +G  R+  A          +E       +  P  +AP 
Sbjct: 241 KKLQFFDNDTNSSYVPYVVETSVGLDRMFLAVFSKALEEETLEDGSTRTVLRLPSVLAPT 300

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           K +++ +   D    +  ++I   L     +V +D+    +G ++   D LG P  + V 
Sbjct: 301 KAAVLPLVKKD-GLPEVAKEIIEDLK-WDFNVAYDEKDA-VGRRYRRQDALGTPFCITVD 357

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + + D  V I+HR +  ++ +++ E+    ++  S
Sbjct: 358 HQTLEDKTVTIRHRDSMEQQRVAISELRGIINNEVS 393


>gi|146312649|ref|YP_001177723.1| histidyl-tRNA synthetase [Enterobacter sp. 638]
 gi|166980047|sp|A4WD92|SYH_ENT38 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|145319525|gb|ABP61672.1| histidyl-tRNA synthetase [Enterobacter sp. 638]
          Length = 424

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/424 (14%), Positives = 119/424 (28%), Gaps = 29/424 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRHERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNK----MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                  F L                +       H     +     E+     D    F+
Sbjct: 126 NQLGVEVFGLQGPDIDAELIMLTARWWRELGISQHVALELNSIGSLEARANYRDALVAFL 185

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD-- 269
            L      +  C +     P+   ++   D+ +L +            S  H   L    
Sbjct: 186 ELHKDKLDED-CQRRMYSNPLRVLDSKNQDVQALLNDAPALGDYLDEESRDHFAGLCKLL 244

Query: 270 -----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                       L        R +        G++ ++     + G   +       + G
Sbjct: 245 EAAGIAYTVNQRLVRGLDYYNRTVFEWVTTSLGSQGTVCAGGRYDGLVEQLGGRAAPAVG 304

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                    ++          +          + +            E++   L   G  
Sbjct: 305 FAMGLERLVLLVQ---AVNPEFKAESVVDIYLVASGADTQSAAMKFAERVRDALP--GVK 359

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +  +  G     QFA AD  G  + +++G   V+  +V +K   +G +  ++ + V  + 
Sbjct: 360 LMTNHGGGNFKKQFARADKWGASVALVLGESEVAAGEVVVKDLRSGEQTTVTQDGVAAHL 419

Query: 439 SHRF 442
               
Sbjct: 420 RTLL 423


>gi|238921038|ref|YP_002934553.1| histidyl-tRNA synthetase [Edwardsiella ictaluri 93-146]
 gi|259511947|sp|C5BET0|SYH_EDWI9 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|238870607|gb|ACR70318.1| histidyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146]
          Length = 424

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/426 (14%), Positives = 133/426 (31%), Gaps = 33/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        + A +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTALWQPIEAALKQVLASYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRHERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNK----MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
               A  F L                +       H     +     E+     D    ++
Sbjct: 126 HQLGAEVFGLAGPDIDAEIIMMTARWWKVLGIADHVTLELNSIGSLEARAAYRDALVAYL 185

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 +    C +     P+   ++    + +L +   + +    A S  H + L   L
Sbjct: 186 EQY-KDQLDEDCLRRMYSNPLRVLDSKNPQVQALLNAAPRLSEYLDADSRAHFDGLCRLL 244

Query: 272 PENKRVSA------RGIEV--GHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYG 318
            +   V        RG++     +F       G + ++     + G   +       + G
Sbjct: 245 DDAGIVYTVNERLVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDGLVAQLGGHATSAVG 304

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--G 376
                    ++             +  P +   + + A  +  + A  ++  +L      
Sbjct: 305 FAMGLERLVLLV-------QAVNPAFLPQRAVDVYLIAAGEGTQSAAMRLAEQLRDALPT 357

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             +  +  G     QFA AD  G  + +++G   V   +V +K   +G ++ ++ ++   
Sbjct: 358 LRLMTNYGGGNFKKQFARADKWGARIALVLGESEVQSGQVNVKCLASGEQQTVAQDQAAT 417

Query: 437 YASHRF 442
             +   
Sbjct: 418 LLATLL 423


>gi|298674180|ref|YP_003725930.1| histidyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
 gi|298287168|gb|ADI73134.1| histidyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
          Length = 408

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 135/413 (32%), Gaps = 26/413 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   +LP        V   IR+   + G  E+  PT ++ +L+  +SG  D    E+   
Sbjct: 8   GTRDFLPGETARRRYVENTIRDVVIKWGYSEVMTPTFETLELFTLKSG--DDIIGELYNF 65

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +  ++ + ++S  + P   +  +  FR E   +    R REF 
Sbjct: 66  TDKGGREIALRPELTAPVMRMYVNKLQSEPH-PLKLFYFENCFRYERPQKG---RFREFW 121

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF----IV 212
                        +      + V+ L      G   +        I   L +E     + 
Sbjct: 122 QFGTEVIGSDKPEADAEVIALAVNILDSVGVNGALHVGDLRIIRHILSGLDNEQQTKVMR 181

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             D  + +        +  +P+E       +      +        T D+     F+ L 
Sbjct: 182 YVDKNDDKGL-DDYLEEIEVPAETRRNLFELISLQGNDALEKAREITGDIPELDNFEEL- 239

Query: 273 ENKRVSARGIEVGHIF------YFGTKYSLPMSATFKGADGKDHYVQMGSYG--IGAMRV 324
             K +   G++    F       + T     + A   GA  +             G   V
Sbjct: 240 -LKLLDVYGLDYTIDFGIARGLDYYTGMVFEIYAEGLGAQNQVCGGGSYQLIKLFGGGEV 298

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
            +       D    +        K  ++         R     I  RL +V      D M
Sbjct: 299 PSTGFGIGFDRIMEVASIEPEETKKLVVVSTDS---TRFEAIDIANRLREV-YPTHVDIM 354

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
                SQ + A+++     VIVG + +   K+ +K+  TG +  M+++E++N 
Sbjct: 355 ERNFKSQLSFANMVEADYAVIVGEREIESGKLTLKNMHTGEQCSMTVDEILNM 407


>gi|239997028|ref|ZP_04717552.1| histidyl-tRNA synthetase [Alteromonas macleodii ATCC 27126]
          Length = 427

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/417 (14%), Positives = 120/417 (28%), Gaps = 32/417 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYG 107
              V +++R+     G  E+  P ++S DL+  S G   D   KEM    DRN  ++   
Sbjct: 22  WQKVESVLRQVVASYGYQEIRTPIVESTDLFKRSIGEVTDIVEKEMYTFEDRNGDSLTLR 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT- 166
           P            H   Y       + +   FR E   +    R R+F      ++ +  
Sbjct: 82  PEGTASCVRAGNEHGLLYNQ-QQRLWYMGPMFRHERPQKG---RYRQFHQFGVETYGMDG 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG---PIGGDLSHEFIVLA--------- 214
           P+            +        +K       S        D   EF+            
Sbjct: 138 PDIDLEVILLSARFWKAFGIEQHVKLQINTLGSNEARAAYRDTLVEFLKQRADQLDEDSL 197

Query: 215 ---DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +T   +V  SK+       ++     D +   S V   T     T      ++   L
Sbjct: 198 RRLETNPLRVLDSKNPDVQAAIADAPALIDHLDEESKVHFETLCSRLTQAGIEFEINPRL 257

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   R +        G + ++     + G   +       + G        A+   
Sbjct: 258 VRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVEQLGGKATPAVGF-------AMGIE 310

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIG 389
                     +       + + + A  +  +    ++   L        +     G    
Sbjct: 311 RLVLLLTTLTEEGQDSSFADVYVTAMGEEAQPYAIEVAEHLRNTLPNTRIMMHCGGGNFK 370

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHRFSNN 445
            Q   AD  G  L +++G+  +   +V +K  R    +  +S + + +  +   S  
Sbjct: 371 KQLKRADKTGARLALLLGNDEMQSREVGVKPLRDGQEQVTVSFDALSDKVAEMLSAK 427


>gi|82914985|ref|XP_728923.1| glycyl-tRNA synthetase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485606|gb|EAA20488.1| glycyl-tRNA synthetase [Plasmodium yoelii yoelii]
          Length = 796

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/376 (13%), Positives = 105/376 (27%), Gaps = 21/376 (5%)

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
            Y     +          +        T+    +     N+            +E    +
Sbjct: 404 EYFFNPEKSKHEKYDLYKHLVLPLYPRTNQLNDNGNVITNMSLEEAVNNGIICNEALA-Y 462

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            + R+  FL+K            +H   +M       +    L S       G       
Sbjct: 463 FLARTYLFLLK-CGIKKDGIRYRQHLEKEMAHYANDCWDAEILTSYGYIECVGHADRSAY 521

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                +  TG     C K      +       +               Y   ++  NE L
Sbjct: 522 DLKHHMNATGSNLYGCQKYDKPVDVEFVKIIPNKAKIGMKFKSDQNKIYKILNEKTNEDL 581

Query: 268 ---FDSLPENKRVSARGI------EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                 L +N+    +G            F            T K     +    +    
Sbjct: 582 LIIEQELNKNQTYILKGYSDQSNDNNNDSFELTRDMISFQKYT-KKVQESNFIPNVIEPS 640

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPF---KISLINIK------AHDQVCRDACEKIY 369
            G  R++  ++E S   +          +     +L  IK      ++++      ++I 
Sbjct: 641 FGIGRLIFCILEHSFRVRQFTDDKEERHYLSLPYALSPIKCSVLSISNNKEFYPYIKQIQ 700

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             LS+       D+    IG ++A  D +G P  V +  + + D  + ++ R + ++  +
Sbjct: 701 TILSENNISCKLDNSSVSIGKKYARIDEIGIPFAVTIDFQTLKDKTITLRDRDSMLQIRV 760

Query: 430 SLEEVINYASHRFSNN 445
           ++ EV +  +   S  
Sbjct: 761 NISEVSDIINSLLSQK 776



 Score = 41.3 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 1/76 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+  + P G      +  + R         +E+    +    +   SG  D +   M++
Sbjct: 162 SGLIDYGPSGCLLKYELEKLWRNHFVFYDEMLEIKGTCITPYSVLKTSGHVDRFTDLMIK 221

Query: 96  LADRNDKAMIYGPTHE 111
                D         E
Sbjct: 222 DIVTKDCYRADKYLSE 237


>gi|326790254|ref|YP_004308075.1| histidyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326541018|gb|ADZ82877.1| histidyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 421

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/415 (13%), Positives = 115/415 (27%), Gaps = 27/415 (6%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAM 104
            +   +V  IIR   +  G  ++  P  +  DL+        D   KEM    D+ +  +
Sbjct: 17  MRKWLDVEQIIRNLCDDFGFNQIRTPMFEFTDLFARGVGETTDIVNKEMYSFVDKGENRI 76

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD 164
              P     +   F  H       P   Y I   FR E        R R+F       F 
Sbjct: 77  TLKPESTAAVVRAFLEHSMFADTQPTKLYYISPTFRYERPQAG---RQRQFHQFGVEMFG 133

Query: 165 LTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                +      +                 + LG      +          + +  +   
Sbjct: 134 TDSPTADAEVIAIGHTLLKRLGINKVELHINSLGGPECRKKYNESLKAFLNTKKEHLCEL 193

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             E         +D   P          + L ++ E+  A +     +        + + 
Sbjct: 194 CQERMDKNPLRVLDCKNPQCQEHLKGAPTVLENLGEECRAHFETLQKLLTAMEIPFVVDP 253

Query: 275 KRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             V         +F F     G + ++     +     +     + + G GA      ++
Sbjct: 254 GIVRGLDYYTKTVFEFISNDIGAQGTVCGGGRYDRLVDEIGGKHVPAVGFGAGMERLIIV 313

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
             + +   +             + I            K+   L + G     D +   I 
Sbjct: 314 RDAENNAPLAPAMR-------DLFIGYRGDEAMMEAFKLVNALRQEGISAESDHLQRSIK 366

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +Q   A+ +      I+G   + + ++++K   +G    + + + +   S+    
Sbjct: 367 AQMKFANKINARYSAIIGESELENGEIQLKEMESGDSVTVPMSQFVQMFSNIIKK 421


>gi|94311043|ref|YP_584253.1| histidyl-tRNA synthetase [Cupriavidus metallidurans CH34]
 gi|93354895|gb|ABF08984.1| histidyl tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 447

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/433 (14%), Positives = 113/433 (26%), Gaps = 44/433 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      D   +  R      G  ++  P ++   L+V   G   D   KEM  
Sbjct: 17  GMNDMLPTDAPLWDMFESAARSMLRAYGYQQIRTPIVEHTQLFVRGIGEVTDIVEKEMYS 76

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 77  FTDSLNGENLTLRPEGTAAAVRSTIEHNLLYDGPKRLWYIGPMFRHERPQRG---RYRQF 133

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
               A +              M       +  LGL ++ +   S           E ++ 
Sbjct: 134 HQLGAEALGFAGPDVDAEIILMCQRL---WDDLGLTNVRLELNSLGQAHERAAHREQLIK 190

Query: 214 ADTGETQVF---CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE----- 265
              G   +      +     P+   +T    +  + +   +        S  H E     
Sbjct: 191 YLEGFQDILDEDSKRRLYTNPLRVLDTKNPALQEMAANAPKLIDFLGEESLAHFEGVQRI 250

Query: 266 --------KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                   K+   L          +        G + ++     +     +       + 
Sbjct: 251 LLANNIPFKINPRLVRGLDYYNLTVFEWITDKLGAQGTIAGGGRYDPLIQQMGGKPAPAC 310

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G          +    +         V   +   + +    ++          RL   G 
Sbjct: 311 GWAMGIERIIELIREENL--------VPDTQGCDVYMVHQGELANQQAMIAAERLRDAGL 362

Query: 378 DVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL------TGIRE 427
           DV      D       SQ   AD  G    VI+G   ++   V++K          G + 
Sbjct: 363 DVVLHATPDGKSGSFKSQMKRADASGASFAVIIGDDEIAAGTVQVKQLRGGNVAEGGQQT 422

Query: 428 DMSLEEVINYASH 440
            +  E+V+ +   
Sbjct: 423 TVPAEQVVEFIID 435


>gi|307596038|ref|YP_003902355.1| glycyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
 gi|307551239|gb|ADN51304.1| glycyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
          Length = 591

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 105/364 (28%), Gaps = 19/364 (5%)

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           ++RL +     + +    E              R +P       +K   E RP+  V   
Sbjct: 212 LIRLREFTQMEIEFFFDPENAKCPYLDELDVKLRIIPERDVAAGVKEPREFRPKEAVENG 271

Query: 153 ------REFLMKDAYSFDLTPEGS-KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
                   F M  A  +         H Y    +   R  +        + +E       
Sbjct: 272 VVPNEWMAFFMGLATIYMNELGVPLDHQYFLAKLPEERAHYSAASFDQMVYSERFGWVEV 331

Query: 206 LSHEFIVLADTGETQVFCSKDFM---DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
             H +    D      +   D         P E  +     +   I E +    A     
Sbjct: 332 SGHAYRTDYDLSRHAKYSGYDLTVERRLATPKEVIEARVYPNPQRIREVFGNEMAKVMQA 391

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                   L        + +  G+       +                         G  
Sbjct: 392 IGRADPRWLASELASRGKAVIEGYTITSDMVFIKEERRKVHIER---FIPHDVEPSFGVD 448

Query: 323 RVVAAVIESSHDGKGIIW----PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R+V   +E ++           P  +AP K  ++ I    +      ++I+  LS  G  
Sbjct: 449 RIVYVTLEHAYTEVNGKPLLRLPPDIAPIKAVVLPIIKKQEYVS-IGKRIFKELSLAGIR 507

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD    IGS++A  D +G P  + +  K  +D+ V I+ R T  +  +++ EVI   
Sbjct: 508 AVYDD-DGTIGSRYAKYDSIGVPFAITIDDKTPADNTVTIRDRDTKAQVRVNISEVIRII 566

Query: 439 SHRF 442
           +   
Sbjct: 567 NDAV 570



 Score = 53.2 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 14/89 (15%)

Query: 24 KLMLRTGMIHQ---------HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI----EMS 70
          +LM   G  +             G Y + PLG +   N+    R             E+ 
Sbjct: 8  ELMSEGGFFYPSFEIYRGKAEVGGFYDYGPLGVELKRNIIEKWRRVFI-YPYQDFIVEVE 66

Query: 71 VPTLQSADLWVESGRYDSYGKEMLRLADR 99
           P +    ++  SG  + +   ++     
Sbjct: 67 TPIIMPKIVFEASGHLEHFTDAIVECTKC 95


>gi|134298623|ref|YP_001112119.1| histidyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
 gi|172044261|sp|A4J2J1|SYH_DESRM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|134051323|gb|ABO49294.1| histidyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
          Length = 419

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/404 (13%), Positives = 114/404 (28%), Gaps = 17/404 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  + R+     G  E+  P  +  +L+        D   KEM    DR D+++   
Sbjct: 20  WQFLEQLTRQVCREYGYGEIRTPIFEHTELFARGVGETTDIVEKEMYTFTDRGDRSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         +  +       P   Y     FR +        +  +F ++   S    P
Sbjct: 80  PEGTASTVRAYVENKLHALPQPVKLYYTGPMFRYDRPQAGRYRQFHQFGVEVFGSN--DP 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVFCSK 225
                        Y RI  +     I         P+      E+     +      C  
Sbjct: 138 AIDAEVIAMAMDIYHRIGLQNLKLHINSVGCPECRPVLRQRLQEYFKPHLSNLCS-NCQG 196

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENKRV 277
            +   P+   +   +    +               + H E +   L         +N+ V
Sbjct: 197 RYERNPLRILDCKSEKCQEIGQSAPTTLDVLCPECNSHFESVKTYLDAVGVSYIIDNRLV 256

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RG++      F        + +  G  G+ + +     G     +  A+         
Sbjct: 257 --RGLDYYTRTAFEIMTQDIGAQSSIGGGGRYNGLIEECGGPATPGIGFALGLERILLTA 314

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                +    +   + I             +   L + G     D +G  + +Q   A  
Sbjct: 315 ERQGITFPITRGPQVYIATVGSGIERQAFALLQDLRRQGIAAEKDYLGRSLKAQMKFAGK 374

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           L     VI+G +        ++    G ++++SL E++ +   R
Sbjct: 375 LDTRFVVILGEEEFDRGVAVVRDMQAGEQQEVSLRELVLFIKAR 418


>gi|320334724|ref|YP_004171435.1| glycyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
 gi|319756013|gb|ADV67770.1| glycyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
          Length = 504

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/491 (13%), Positives = 136/491 (27%), Gaps = 76/491 (15%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADL 79
           R G I Q S      +G Y + PLG +  +N+           R     +    +    +
Sbjct: 15  RRGFIFQGSEIYGGLQGFYDYGPLGVELKNNIKQAWWRTNVYERDDMEGLDASIIMHRMV 74

Query: 80  WVESGRYDSYGKEM---LRLADRNDKAM---------------IYGPTHEEVMTDIFRSH 121
              SG   ++   M    +   R                      G + E     +    
Sbjct: 75  LRHSGHEATFSDPMVDNRKTKKRYRLDHLVKDQKPAVQQAVAEAMGESLENFAALVAAMV 134

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF--------LMKDAYSFDLTPEGSKHS 173
               R                    +   +               +     L PE ++  
Sbjct: 135 KNPARASEALIAGGVRDAFSGEVGDWTEPKPFNMMFKTTIGPTADEDSYGYLRPETAQGI 194

Query: 174 YNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC----SKDFM 228
           +            R     +   +A    I        +   +  E + FC     +D+ 
Sbjct: 195 FTNFKNVVDSTSRRLPFGIAQIGKAFRNEITPRNFIFRVRELEQMEIEFFCAPGTDEDWH 254

Query: 229 DFPIPSENTDF-------DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
           +  + +    +       + I  L+   E        T D+  +       E + ++ R 
Sbjct: 255 EHWLQARLAWWAAQGVPREKIQILDVPKEDLAHYSKRTYDLMYDYPTLGYEEIEGIANRS 314

Query: 282 IEVGHIF-----YFGTKYSLPMSATFKGA-------DGKDHYVQMGSYGIGAMRVVAAVI 329
                         G +  +  +               K     +     G  R + AV+
Sbjct: 315 DYDLGSHTKAQGELGIQARVEENLDSVAKLTIPHPDTNKPVVPFVIEPSAGVDRAMLAVL 374

Query: 330 ESSH---------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DV 379
             ++         +   +     +AP K+++I +  + +      + + A L K+G   +
Sbjct: 375 SEAYTKETLENGSERIVLKLKPHLAPIKVAVIPLARNREEIVSVAKSVKADLQKLGLGRI 434

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS-------KVEIKHRLTGIREDMSLE 432
            ++D G  IG  +   D +G P  V V    V           V ++ R T  +E + + 
Sbjct: 435 LFEDSG-NIGKAYRRHDEVGTPFCVTVDFDTVGKGEDEALVDTVTVRDRDTLAQERVKIS 493

Query: 433 EVINYASHRFS 443
           ++  Y + R  
Sbjct: 494 DLAAYLTSRLK 504


>gi|254449209|ref|ZP_05062658.1| histidyl-tRNA synthetase [gamma proteobacterium HTCC5015]
 gi|198261186|gb|EDY85482.1| histidyl-tRNA synthetase [gamma proteobacterium HTCC5015]
          Length = 413

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 65/416 (15%), Positives = 123/416 (29%), Gaps = 21/416 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP    A   + + ++    + G  E+ +P L+  +L+  S     D   KEM    DRN
Sbjct: 5   LPDQTPAWQQLESTLQHLMQQYGYREIRMPVLEQTELFSRSIGDVTDIVEKEMYTFEDRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P            H   +       + +   +R E   +    R REF     
Sbjct: 65  GDSLTLRPEGTASCVRAGIQHGLLFNQ-TQRLWYMGTMYRHERPQKG---RYREFRQIGV 120

Query: 161 YSFDLTPEGSKH---------SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            ++ +     +                       + LG      +     I    +HE  
Sbjct: 121 ETYGMPGPDVEAELILMSARLWKRLGLKQVRLELNTLGTAEERQQYRQQLIEFYQAHEEQ 180

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDS 270
           +  +            +D   P          SL   + E+  A +    ++      D 
Sbjct: 181 LDEEAKSRLHSNPLRILDSKNPQVAALNTSAPSLMDALGEESRAHFDTLCELLRAAGVDY 240

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
               K V         +F + T           G        Q+G     A+ +   +  
Sbjct: 241 CINPKLVRGLDYYCHTVFEWITDELGAQGTICAGGRYDGLVEQLGGRATPAVGMAMGMDR 300

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD--VFWDDMGEQI 388
                + +      +   I ++ + A D+    A  +   +L     D  V W   G  +
Sbjct: 301 LLALLEELGELTMPSAADIYVLALGADDE---AAAMQCAEQLRDQMVDYKVQWHCGGGSL 357

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            S+F  AD  G    V++G       +V IK    G +  ++ +E+    +     
Sbjct: 358 KSRFKKADKSGARYAVLIGGDEGQRGEVVIKPLRGGEQITVASDELAQRLTSYIQE 413


>gi|290508293|ref|ZP_06547664.1| histidyl-tRNA synthetase [Klebsiella sp. 1_1_55]
 gi|289777687|gb|EFD85684.1| histidyl-tRNA synthetase [Klebsiella sp. 1_1_55]
          Length = 414

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/418 (12%), Positives = 116/418 (27%), Gaps = 23/418 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLAD 98
            +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM    D
Sbjct: 3   DYLPGETALWQRIEGSLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFED 62

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRSREF 155
           RN  ++   P            H   Y      +Y     + +   + R R       E 
Sbjct: 63  RNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYVGPMFRHERPQKGRYRQFHQIGAEV 122

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
                   D         + +            + +G            +         +
Sbjct: 123 FGLQGPDIDAELIMLTARWWRELGIADHVSLELNSIGSLEARANYRDALVAYLEQFTDKL 182

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW--TAPYAATSDVHNE----K 266
             D+           +D   P      +D  +L   +++   T      + + +      
Sbjct: 183 DEDSKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDEESKTHFAGLCALLDDAGIRYT 242

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           +   L        R +        G++ ++     + G   +         G        
Sbjct: 243 VNQRLVRGLDYYNRTVFEWVTTSLGSQGTVCAGGRYDGLVEQLGGRATPGVGFAMGLERL 302

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDM 384
            ++                   +  I + A     + A  ++  ++     G  +  +  
Sbjct: 303 VLLV-------QAVNPEFKADPVVDIYLVASGTDTQSAAMRLAEQVRDALPGVKLMTNHG 355

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G     QFA AD  G  + ++VG   ++D  V +K   +G +  ++ E V  +     
Sbjct: 356 GGNFKKQFARADKWGARIALVVGESEIADGNVVVKDLRSGEQTTVTQESVAAHLRTLL 413


>gi|218458539|ref|ZP_03498630.1| threonyl-tRNA synthetase [Rhizobium etli Kim 5]
          Length = 104

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 30/81 (37%)

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   ++   L + G +V  D   E+I  +     +   P+ ++ G K   +  V I
Sbjct: 4   SEADAYGLEVAEALREAGLNVETDFRNEKINYKIREHSVTKVPVIIVCGRKEAEERTVNI 63

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           +   +  +  M L+  +   +
Sbjct: 64  RRLGSQDQVSMGLDAAVESLT 84


>gi|160878710|ref|YP_001557678.1| histidyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|189082289|sp|A9KIA5|SYH_CLOPH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|160427376|gb|ABX40939.1| histidyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 417

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/420 (14%), Positives = 123/420 (29%), Gaps = 15/420 (3%)

Query: 31  MIHQHSKGIYSWLPLGQKALDN--VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRY 86
           MI Q  KG   W   G        +  + R+        E+  P  +   L+        
Sbjct: 1   MITQRPKGTLDW--YGDNMYKRTLIEELARKLCKAYNIKEIITPVFEHTILFQRGVGETT 58

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D   KEM    D+ D+++   P         +  +     + P   + +   FR E    
Sbjct: 59  DVVQKEMYTFLDKKDRSITLKPEGTAGAIRAYLENNLYAESGPTKLFYVTPAFRYEQPQS 118

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF------VSYLRIFHRLGLKSIPMRAESG 200
             + +  +F ++   S     E    +    F             + +G K+        
Sbjct: 119 GRLRQHHQFGVEFVGSKSPLAEVELITLITTFLKEIGLKKAKLHINSIGCKNCRATYNEA 178

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
            +     HE  + +   E         +D    +      D       +++    +    
Sbjct: 179 LLTYLRKHEDHLCSTCKERMQKNPLRVIDCKESACKEIVKDAPRTIEYLDEECKNHFEEL 238

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 L     E      RG++      F  ++      T  G    D  V        
Sbjct: 239 QSLLHTLNIPF-EIDTGIVRGLDYYTKTVF--EFVNEDGFTLCGGGRYDGLVHEIDEKQD 295

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
              V   +              S+ P     + +       + +  ++  +L   G    
Sbjct: 296 IPSVGFGMGIERILYFLEKEEVSLPPQPAIELYVGILGAEAKASAYQLVTKLRGEGIITE 355

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D M   + +Q   A+ +G    VI+G+  ++     +K+  TG + ++ LE++ ++   
Sbjct: 356 TDYMDRSVKAQMKYANKIGAKNTVILGADELAKGLANVKNMETGEQTELPLEDIADFILK 415


>gi|313897403|ref|ZP_07830946.1| histidine--tRNA ligase [Clostridium sp. HGF2]
 gi|312957773|gb|EFR39398.1| histidine--tRNA ligase [Clostridium sp. HGF2]
          Length = 445

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/422 (12%), Positives = 127/422 (30%), Gaps = 17/422 (4%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSY 89
           M +Q  +G    LP        +  +IR+        E+  P  +  +++       D  
Sbjct: 1   MSYQVPRGTQDILPNEISKWHRLEELIRQFTYVYNYQEIRTPIFEHTNVFKRGNDSSDMV 60

Query: 90  GKEMLRLA-DRNDKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
            KEM     + +  ++   P     +        +  Y +LP   Y +  + R E   + 
Sbjct: 61  NKEMYTFQLENSSTSLTLRPEGTAGVARAFVEHKMYGYADLPMKMYYVGPQCRHERPQKG 120

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGD 205
            +    +F +        +P     +    +     +  +     I    +  S     +
Sbjct: 121 RMRIFNQFGV--EVIGAKSPLLDVETIALGWSFISALGLKDMKVLINTLGDDASRAAYRE 178

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E     D       C + +   P+   +   D  + +   V +        S  + E
Sbjct: 179 ALKE-HFKNDIDHMCTDCKRRYEQNPLRILDCKIDHDLDIMKQVPKMADYLNEESKAYFE 237

Query: 266 KLFDSL--------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           ++ + L         ++K V         +F   +      + +   A G+   +     
Sbjct: 238 QVLEGLDALGIPYEVDDKLVRGLDYYTHTVFEVVSVNKEMGAQSTVFAGGRYDGLVEYFG 297

Query: 318 GI-GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           G  G   +  A+              S+       + +            ++  +L   G
Sbjct: 298 GPEGMSGIGWAMGLERLLIALEAEGISLVDEDSLDVYVLCLSPKASTTVLQVVTQLRAAG 357

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                D +   + +QF   D +   + +++G + +      +K+  T  + +++ + ++ 
Sbjct: 358 YRTDTDYLNRSMKAQFKTVDRMHAKVAIMIGEQDLESGSAAVKNIETKEKTEVAFDSIVE 417

Query: 437 YA 438
             
Sbjct: 418 AI 419


>gi|218548049|ref|YP_002381840.1| histidyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|226737075|sp|B7LKC4|SYH_ESCF3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|218355590|emb|CAQ88201.1| histidyl tRNA synthetase [Escherichia fergusonii ATCC 35469]
          Length = 429

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/427 (13%), Positives = 116/427 (27%), Gaps = 30/427 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP+       V  II+      G  E+  P L+   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPVETAVWQRVERIIKSVVESYGYSEIRTPILEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDK-----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----R 146
             DR        ++   P            H   Y      +Y +   FR E       R
Sbjct: 70  FNDRERDAKEVVSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWY-MGPMFRHERPQKGRYR 128

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIG 203
                  E         D         + +            + +G            + 
Sbjct: 129 QFHQIGLEVFGLQGPDIDAELIMLTARWWRELGISEHVTLELNSIGSLEARANYRDALVA 188

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDV 262
               H+  +  D            +D   P      +D  +L   +++ +   +A    +
Sbjct: 189 FLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKL 248

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSY 317
                       + V         +F       G++ ++     + G   +       + 
Sbjct: 249 LESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATSAV 308

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV-- 375
           G         ++                   +  I + A     + A   +  RL     
Sbjct: 309 GFAMGLERLVLLV-------QAVNPEFKADPVVDIYLVASGADTQPAAMALAERLRDELP 361

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  +  +  G     QF  AD  G  + V++G   V++    +K   +G +  ++ + V 
Sbjct: 362 GVKLMTNHGGGNFKKQFGRADKWGARIAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVA 421

Query: 436 NYASHRF 442
            +     
Sbjct: 422 AHLRTLL 428


>gi|134046484|ref|YP_001097969.1| glycyl-tRNA synthetase [Methanococcus maripaludis C5]
 gi|166227935|sp|A4FZX1|SYG_METM5 RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|132664109|gb|ABO35755.1| glycyl-tRNA synthetase [Methanococcus maripaludis C5]
          Length = 575

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 79/550 (14%), Positives = 159/550 (28%), Gaps = 145/550 (26%)

Query: 37  KGIYSWLPLGQKALDNVNAIIR--------------------EEQNRTGAIEMSVPTLQS 76
            G + + PLG    +NV    R                    E    +G +E     L  
Sbjct: 28  AGFFDYGPLGAILKNNVINTWRKHYIVNEGFYEIDSPTVTPYEVLKASGHVENFTDPLVE 87

Query: 77  ADLWVESGRYDSYG-------------KEMLRLADRNDK--------------------- 102
               +ES R D                +E+  + ++N+                      
Sbjct: 88  CKSCLESFRADHIIEENVDVDTEGKTLQELQEMIEKNNIKCPKCGGEFKEVSTFNLMFAT 147

Query: 103 ---------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
                    A +   T + +     R        LPF   QI   +R+E+ PR GV+R R
Sbjct: 148 SIGPGGKRAAFMRPETAQGIFIQFKRISQFFRNKLPFGAVQIGKAYRNEISPRQGVIRLR 207

Query: 154 EFLM-KDAYSFDLTPEGSKHSYNKMFVSYLR------------------------IFHRL 188
           EF   +  +  D   + +   +  +    L                            + 
Sbjct: 208 EFTQAEGEFFIDSRKKENFEKFESVKEIVLPLLSGKNQENESLSAEEKIVRMSLSDAVKN 267

Query: 189 GLKSIPMRAESGPIGGDLSHEF------------------IVLADTGETQVFCSKDFM-D 229
           G+ +    A    +      E                      AD  + +++  +    +
Sbjct: 268 GIIAHEAIAYYIAVTKKFLMEIGIDESKLRFRQHLPNEMAHYAADCWDAELYTDRYGWIE 327

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP----------------- 272
               ++ T++D +  + +  E  +       D   E     L                  
Sbjct: 328 CVGIADRTNYDLLAHMKNSSEDLSVFVELDEDKEIEVYEIELNYKLVGRTFKGDSKVLEE 387

Query: 273 -------ENKRVSARGIEVGHIFYFGTKYSLPMSAT--------FKGADGKDHYVQMGSY 317
                  +        +E    +   T                  K   G+     +   
Sbjct: 388 SLKELDDKKMEELVEALETEGKYVLSTCKRDFELLKEYLTAKKVKKTVKGEKIIPHVIEP 447

Query: 318 GIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             G  R+   V+E +     D   + + ++V+P K+ +  +    +   +    +  +L 
Sbjct: 448 SYGIDRITYCVMEHAFKEDEDRTVMGFSNAVSPIKVGVFPLVNK-EGMPEIAMDLKNKLR 506

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G    +DD G  IG ++   D +G P  V +  + ++DS V I+ R +  +  + + E
Sbjct: 507 ENGLIAEYDDSGA-IGRRYMRMDEVGTPFCVTIDGETLTDSSVTIRERDSREQFRIPINE 565

Query: 434 VINYASHRFS 443
           V+ Y   + +
Sbjct: 566 VVPYIKDKLN 575


>gi|55379326|ref|YP_137176.1| glycyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|55232051|gb|AAV47470.1| glycyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 614

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 87/324 (26%), Gaps = 52/324 (16%)

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            D+     +         Y         +      E         ++    A     + +
Sbjct: 288 VDMDRFRYRQHLAGERAHYASDCWDAESEVDGDWIEITGFAYRGDYDLSKHA-KHSGEDY 346

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                 D PI  +    D    ++ +  ++     A +D   E L +  P+        +
Sbjct: 347 TVFKQYDEPITVDRATVD--PDMSYLGPEFGGSAGAVADA-LEALAERNPDAFDDDEVTV 403

Query: 283 E-VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK----- 336
           E  G         +          +G+     +     G  R++  V+  S++       
Sbjct: 404 EVDGKSHTVPVDKTNFSVDEVT-ENGEHIRPHVVEPSFGVGRIIYTVLAHSYETDEVDGE 462

Query: 337 ---GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
               +  P   AP  + +  +   D    D    I   L   G  V +DD G  IG ++ 
Sbjct: 463 ERTYLDLPPEQAPTTVGVFPLMDKD-GMADLATDIADDLRAAGLSVTYDDSGA-IGRRYR 520

Query: 394 VADLLGFPLQVIVGSKFVSD------------------------------------SKVE 417
             D +G P  V V  + + D                                      V 
Sbjct: 521 RQDEVGTPYCVTVDYESLEDDSEAQRASDSASSAEPRSANRSSGQSPREDGDEPRAGTVT 580

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++ R T  ++ + ++ +       
Sbjct: 581 VRERDTTEQKRLPIDGLAETLEQL 604



 Score = 59.0 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 6/121 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + G +++ P G     N+    R+    + G  E+S P +    ++  SG  D +   ++
Sbjct: 27  AAGFWTYGPQGAALKSNIEDAWRDRYVVKEGHQEISAPDVMPEPVFEASGHLDGFDDMIV 86

Query: 95  RL-----ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
                    R D  +      EE  +      +                  D+    F +
Sbjct: 87  ECGECGATHRADHLVEDNTDIEEAESLPNEEVMDLIAEHGIECPSCHTSLADQPVDNFNL 146

Query: 150 M 150
           M
Sbjct: 147 M 147


>gi|198275440|ref|ZP_03207971.1| hypothetical protein BACPLE_01604 [Bacteroides plebeius DSM 17135]
 gi|198271069|gb|EDY95339.1| hypothetical protein BACPLE_01604 [Bacteroides plebeius DSM 17135]
          Length = 513

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 110/355 (30%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   AD   K  +   T + +  +           +PF   QI   FR+E+  R  
Sbjct: 198 FTTEMGSTADGAMKVYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      + K     L+    LG      R           H
Sbjct: 258 IFRMREFEQMEMQFFVK-PGTELDWFKKWKEIRLKWHKALGFGDDHYRYHD--------H 308

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E +       T +     F                            +     +H+   F
Sbjct: 309 EKLAHYANAATDIEFLMPF---------------------------GFKEVEGIHSRTNF 341

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     K         G    +           +             S    A       
Sbjct: 342 DLSQHEK-------FSGKSIKYFDPEINESYTPYVIETSIGVDRMFLSVMSAAY--HEEK 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P ++AP K++++ +   D    +   +I   L     +  +D+    I
Sbjct: 393 LENGETRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIVNDLK-FHFNCQYDEKD-SI 449

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  + +  + + D+ V +++R T  +E +++ ++ N  + + S
Sbjct: 450 GKRYRRQDAIGTPYCITIDHQTLEDNCVTLRNRDTMEQERVAIADLNNIIADKVS 504


>gi|292900175|ref|YP_003539544.1| histidyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291200023|emb|CBJ47148.1| histidyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
          Length = 425

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 57/412 (13%), Positives = 122/412 (29%), Gaps = 23/412 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        V  ++++  +  G  E+ VP ++   L++ + G   D   KEM  
Sbjct: 10  GMNDYLPAETAVWQRVEQVLKQVLSSYGFSEIRVPIVEQTPLFLRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF---RDELRPRFGVMRS 152
             DRN +++   P            H   Y      +Y   +       + R R      
Sbjct: 70  FDDRNGESLSLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRYERPQKGRSRQFHQIG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            E         D         + K       +   L          +         E  V
Sbjct: 130 AEVFGLQGPDIDAELIMMTARWWKALGIADHVVLELNSIGSLQARANYRDALVAFLEQHV 189

Query: 213 LADTGETQVFCSKD---FMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEK-- 266
                + +     +    +D   P      +D  +L   ++  +   +A      +    
Sbjct: 190 EMLDEDCKRRMYSNPLRVLDSKNPDVQALLNDAPTLGDYLDDESREHFAGLCRHLDAAGI 249

Query: 267 ---LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L        R +        G + ++     + G   +       + G     
Sbjct: 250 AYRVNQRLVRGLDYYNRTVFEWVTDKLGAQGTVCAGGRYDGLVEQLGGHATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                P ++  + + A  Q  + A   +  +L        +  
Sbjct: 310 ERLVLLV-------QAVNPEFEPTRVVDVYVIAAGQGVQSAALLLAEQLRDALPELKLMS 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +  G     QFA AD  G  + +++G   V++ ++ IK   TG ++ ++  +
Sbjct: 363 NLGGGSFKKQFARADKWGARIALVIGEDEVANGQLVIKDLRTGEQQTLAQGD 414


>gi|153949863|ref|YP_001400168.1| histidyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|166980051|sp|A7FFZ0|SYH_YERP3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|152961358|gb|ABS48819.1| histidyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
          Length = 424

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/422 (15%), Positives = 133/422 (31%), Gaps = 31/422 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        + +I+++  +  G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTAIWQRIESILKQVLSGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH------ 208
               A  F L  P+            +  +     +K       S     D         
Sbjct: 126 HQLGAEVFGLPGPDIDAELILLTARWWRALGIFEHVKLELNSIGSLAARADYREALVAFL 185

Query: 209 EFIVLADTGETQVFCSKD---FMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHN 264
           E  V     + +     +    +D   P      DD   L+  +++ +   +A   ++ +
Sbjct: 186 EQHVEVLDEDCKRRMYSNPLRVLDSKNPDVQQLLDDAPKLSDYLDEESKQHFAGLCELLD 245

Query: 265 EK-----LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
           +      + + L        R +        G + ++     + G              +
Sbjct: 246 KASIPYTVNERLVRGLDYYNRTVFEWVTHSLGAQGTVCAGGRYDGLVEQLGGRATPAVGF 305

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +G  R+V  V   + D +     D+                      E +   L  +  
Sbjct: 306 AMGLERLVLLVQAVNADFQVPATVDAYVISSGE-----GSQSAAMLLAESLRDALPTLKI 360

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
              +   G  +  QF  AD  G  + +++G   V+  +V +K    G +E ++  +V   
Sbjct: 361 MTNY--GGGNVKKQFTRADKCGARVALMLGESEVAAQQVVVKDLRNGEQETLAQADVAAR 418

Query: 438 AS 439
            +
Sbjct: 419 LA 420


>gi|124025391|ref|YP_001014507.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
 gi|166228593|sp|A2C182|SYH_PROM1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123960459|gb|ABM75242.1| Histidyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
          Length = 423

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 63/426 (14%), Positives = 122/426 (28%), Gaps = 31/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP   +    V +I  E  +R G  E+  P L+  +L+        D  GKEM  
Sbjct: 9   GMLDLLPAQSQGWQKVESIALEHFSRAGLQEIRTPILEQTELFSRGIGENTDVVGKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMR 151
             DR  ++    P     +      H       P   +     FR E       R     
Sbjct: 69  FDDRGGRSCTLRPEGTAPVARSIIQHGLLNNG-PQRLWYRGPMFRYERPQAGRQRQFHQI 127

Query: 152 SREFL-----MKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIG 203
             EF+     M DA    +     K          ++ L       +    ++       
Sbjct: 128 GVEFVGLASVMSDAEVISIAWNFLKDVGLNDLTLEINSLGSNEDRNIFKEELKDWLNQRF 187

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             L  +     +    ++  SK+     + SE    +D +S  S            +   
Sbjct: 188 DLLDEDSQKRINVNPLRILDSKNNSTKELLSEAPSLNDFLSSESKTRFDYLQELLVNLKI 247

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             K+  +L       +         + G++ ++     + G   +    Q  S G     
Sbjct: 248 PYKINYNLVRGLDYYSHTAFEITSDHLGSQATVCGGGRYDGLISELGGPQAPSIGWAIGM 307

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++              +   K   + +    +       +I  +L      +  D 
Sbjct: 308 ERLVILAGDK----------ILQTKSPDVYVIHKGKKAEQLALEITCQLRSSNLIIELDY 357

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE------EVINY 437
            G     QF  AD       +++G   VS  ++ +K      +++ S E      ++   
Sbjct: 358 SGSSFSKQFKRADKSRAKWALVIGEDEVSKGQLLMKKLRDKQKDEESREYIFSKGDLDQL 417

Query: 438 ASHRFS 443
                +
Sbjct: 418 IKKLIA 423


>gi|302843196|ref|XP_002953140.1| hypothetical protein VOLCADRAFT_75635 [Volvox carteri f.
           nagariensis]
 gi|300261527|gb|EFJ45739.1| hypothetical protein VOLCADRAFT_75635 [Volvox carteri f.
           nagariensis]
          Length = 692

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 56/168 (33%), Gaps = 8/168 (4%)

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           G  F            T +   GK +   +     G  R++  + E S+  +      +V
Sbjct: 506 GQSFEIKPGMVEIKKVT-EKVTGKTYTPSVIEPSFGIGRIMYCMFEHSYYTREGDETRAV 564

Query: 345 APFKISLINIKA------HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             FK  +   KA            D   KI   L+  G     D  G  IG ++A  D +
Sbjct: 565 MGFKPVVAPTKATVFPLVQKPALNDLAAKISRDLTAAGLSNIIDTTGNTIGKRYARTDEI 624

Query: 399 GFPLQVIVGSKFVS-DSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G P  V V    V  D  V ++ R +  +  +   EV +       + 
Sbjct: 625 GVPFAVTVDFVSVDGDGSVTLRERDSMAQVRVPQSEVASVIRDLVDDR 672



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G Y + P G     N+    R         +E+  P +    +   SG  D +   M+ 
Sbjct: 101 AGFYDYGPPGCAIKQNMTQTWRNHFVLEENMLEVECPAVTPEIVLKASGHVDRFTDFMVT 160

Query: 96  LADRNDK 102
                + 
Sbjct: 161 DVATGEC 167


>gi|282878742|ref|ZP_06287510.1| glycine--tRNA ligase [Prevotella buccalis ATCC 35310]
 gi|281299133|gb|EFA91534.1| glycine--tRNA ligase [Prevotella buccalis ATCC 35310]
          Length = 533

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/355 (16%), Positives = 111/355 (31%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM  L+D  +K  +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 198 FSTEMGSLSDATNKIYLRPETAQGIFVNYLNVQKTGRMKLPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      + +   + +     LG  +   R           H
Sbjct: 258 IFRMREFEQMEMQFFVK-PGTELEWFKQWKQTRMAWHQALGFGAENYRFHD--------H 308

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E +       T +     F                            +     +H+   F
Sbjct: 309 EKLAHYANAATDIEFKMPF---------------------------GFKEVEGIHSRTNF 341

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     K         G    +    +      +             S            
Sbjct: 342 DLSQHEK-------FSGKNLKYFDPETSESYVPYVIETSIGVDRMFLSVMC--HSYQEEE 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P ++AP K +++ +    +   +   +I   L K   +  +D+    I
Sbjct: 393 LENGEKRVVLRLPAALAPVKCAVMPLVRK-EGLPEKAREIVD-LLKFHFNTSYDEKD-SI 449

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  V V    + D+KV ++HR T  ++ + + E+ +    + S
Sbjct: 450 GKRYRRQDAVGTPYCVTVDFDTLEDNKVTLRHRDTMEQQRVDISELCSVIEEKVS 504


>gi|82544963|ref|YP_408910.1| histidyl-tRNA synthetase [Shigella boydii Sb227]
 gi|123741953|sp|Q31XX6|SYH_SHIBS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|81246374|gb|ABB67082.1| histidine tRNA synthetase [Shigella boydii Sb227]
 gi|320185214|gb|EFW59994.1| Histidyl-tRNA synthetase [Shigella flexneri CDC 796-83]
 gi|332092796|gb|EGI97865.1| histidyl-tRNA synthetase [Shigella boydii 3594-74]
          Length = 424

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 116/421 (27%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             D N  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDLNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 CEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   +++ +   +A    +      
Sbjct: 190 EKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK--VGCDVFW 381
               ++                   I  I + A     + A   +  RL     G  +  
Sbjct: 310 ERLVLLV-------QAVNPEFKADPIVDIYLVASGADTQSAAMALAERLRDELQGVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +    
Sbjct: 363 NHGGGNFKKQFARADKWGARVAVVLGESEVTNGTAVVKDLRSGEQTAVAQDSVAAHLRTL 422

Query: 442 F 442
            
Sbjct: 423 L 423


>gi|221060322|ref|XP_002260806.1| glycyl-tRNA synthetase [Plasmodium knowlesi strain H]
 gi|193810880|emb|CAQ42778.1| glycyl-tRNA synthetase, putative [Plasmodium knowlesi strain H]
          Length = 830

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/435 (12%), Positives = 131/435 (30%), Gaps = 88/435 (20%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           N+ A +   T + +  +  +    +   +PF   QI L FR+E+ PR G++R REF M +
Sbjct: 377 NNIAFLRPETAQGIFVNFKKLLEYNGGKMPFAGAQIGLGFRNEISPRNGLLRVREFEMAE 436

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL------------- 206
              F    +     Y+      L ++ R    +    +    +  +              
Sbjct: 437 IEYFVNPEKKCHEKYHLFKHLILPLYPREEQLASGEHSRVVYMEIEEAVTKGIIANEALA 496

Query: 207 ---------------------------SHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                                      +       D  + ++  S  F++    ++ + +
Sbjct: 497 YFLARTYLFLLKCGINKDGLRFRQHLPTEMAHYANDCWDAEILTSYGFIEVVGHADRSAY 556

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           D    +        A     + V  E +  S  + K       +   I+ +  + +    
Sbjct: 557 DLKNHMKVTGANLYACEKYDTPVEEEHIKISPNKAKMGMKFKSQQNVIYQWLNERTKEEL 616

Query: 300 ATFKGADGKDHYVQMGSYG---------------------------------------IG 320
            +      + +   +   G                                        G
Sbjct: 617 LSIDEELNRKNSYVVNIEGSGASSTPMSFELTRDMIKFDKYKKKVQERNFIPNVIEPSFG 676

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPF---KISLINIK------AHDQVCRDACEKIYAR 371
             R++  +IE S   +          +     +L  IK      ++ +      +++   
Sbjct: 677 IGRLIFCIIEHSFRTRTFTDDKEERHYLSLPYTLAPIKCSVLTISNHKTFIPFVKQVQMI 736

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L++       D+    IG ++A  D +G P  V +  + + D  V ++ R + ++  + L
Sbjct: 737 LNEFSISSKIDNSSVSIGKKYARTDEIGIPFAVTIDFQTLKDKTVTLRERDSMLQVRIDL 796

Query: 432 EEVINYASHRFSNNR 446
            +++   +      +
Sbjct: 797 SDLVEIVTSLLRQKK 811



 Score = 42.8 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 1/77 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEML 94
           S G+  + P G      +  + R         +E+S   +    +   SG  D +   M+
Sbjct: 186 SSGLIDYGPSGCLLKSELENLWRYHFIFYDEMLEISATCITPYTVLKTSGHVDRFTDLMI 245

Query: 95  RLADRNDKAMIYGPTHE 111
           R A   D         E
Sbjct: 246 RDAVTGDFYRADKYIAE 262


>gi|225016790|ref|ZP_03705982.1| hypothetical protein CLOSTMETH_00702 [Clostridium methylpentosum
           DSM 5476]
 gi|224950458|gb|EEG31667.1| hypothetical protein CLOSTMETH_00702 [Clostridium methylpentosum
           DSM 5476]
          Length = 439

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/405 (14%), Positives = 124/405 (30%), Gaps = 19/405 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  +  +     G  E+ VPT +  +L+  S     D   KEM    DR  +++   
Sbjct: 25  WQFIENLALDTARLYGFREIRVPTFEHTELFKRSVGDTTDVVQKEMFTFEDRGGRSLSLR 84

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P            +      LP     +   FR+E        R +EF       F    
Sbjct: 85  PEGTAGTVRAALENGLLGDALPVKLSYVVSCFRNERPQAG---RFKEFHQFGVEMFGAAA 141

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            G+             IF +LG++++ ++  S       +     L D     +      
Sbjct: 142 PGADAEV---IGVANDIFEQLGIQNLELQINSIGCPECRAKYQQALKDYFSAHLGTLCGT 198

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA-------- 279
            +  +        D            AP       ++ +    L +    +         
Sbjct: 199 CEERLEKNPMRLLDCKVPECAEIAKDAPVILDYICNDCRKHFELTKVNLQAMGIAFVVNP 258

Query: 280 ---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F    +   + +     G+   +     G     +  A+        
Sbjct: 259 RIVRGLDYYTRTVFEFVSNDLGAQSTVCGGGRYDGLVETLGGKPTPALGFAMGLERLLMI 318

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                  +   +   + I +  +       ++ + L K G  V +D +G  + +Q   AD
Sbjct: 319 LDKQGIELPSPQSCDLYIASIGEEAALKAAQLTSLLRKEGFFVEFDTVGRSLKAQMKYAD 378

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            LG  L +++G   VS  K ++K    G  +++  +++      +
Sbjct: 379 KLGAKLSMVIGDDEVSSCKAKLKDMGDGETKEVEFKDLPEAVYQK 423


>gi|332162635|ref|YP_004299212.1| histidyl-tRNA synthetase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606739|emb|CBY28237.1| histidyl-tRNA synthetase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666865|gb|ADZ43509.1| histidyl-tRNA synthetase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 450

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/420 (13%), Positives = 123/420 (29%), Gaps = 27/420 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +  I+++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 36  GMNDYLPADTAIWQRIEGILKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEKEMYT 95

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 96  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRYERPQKG---RYRQF 151

Query: 156 LMKDAYSFDLTPEGSKHS----YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
               A  F L              + + +     H     +     ++     +    F+
Sbjct: 152 HQLGAEVFGLQGPDIDAELILLTARWWRALGISEHVQLELNSIGSLDARADYREALVTFL 211

Query: 212 VLA------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHN 264
                    D            +D   P      +D   L+  ++  +   +A   ++ N
Sbjct: 212 EQHVDVLDEDCKRRMYSNPLRVLDSKNPDVQLLLNDAPKLSDYLDDESKQHFAGLCELLN 271

Query: 265 EKLFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +         + V         +F       G + ++     + G    +      +  +
Sbjct: 272 QAGIPYTVNERLVRGLDYYNRTVFEWVTNSLGAQGTVCAGGRYDGL--VEQLGGRATPAV 329

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G    +  ++             +     +                E++   L  +    
Sbjct: 330 GFAMGLERLVLLVQAVNPEFKVPATIDVYLISSGEGTQS-AAMQLAERVRDVLPTLKLMT 388

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +   G     Q   AD  G  + +I+G   V+  +V +K    G +E ++  +V    +
Sbjct: 389 NY--GGGNFKKQITRADKWGARVALILGESEVAAQQVVVKDLRNGEQETLAQADVAARLA 446


>gi|123441419|ref|YP_001005406.1| histidyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166228630|sp|A1JKS3|SYH_YERE8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|122088380|emb|CAL11171.1| histidyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 424

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/420 (13%), Positives = 123/420 (29%), Gaps = 27/420 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +  I+++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTAIWQRIEGILKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHS----YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
               A  F L              + + +     H     +     ++     +    F+
Sbjct: 126 HQLGAEVFGLQGPDIDAELILLTARWWRALGISEHVQLELNSIGSLDARADYREALVTFL 185

Query: 212 VLA------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHN 264
                    D            +D   P      +D   L+  ++  +   +A   ++ N
Sbjct: 186 EQHVDVLDEDCKRRMYSNPLRVLDSKNPDVQLLLNDAPKLSDYLDDESKQHFAGLCELLN 245

Query: 265 EKLFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +         + V         +F       G + ++     + G    +      +  +
Sbjct: 246 QAGIPYTVNERLVRGLDYYNRTVFEWVTNSLGAQGTVCAGGRYDGL--VEQLGGRATPAV 303

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G    +  ++             +     +                E++   L  +    
Sbjct: 304 GFAMGLERLVLLVQAVNPEFKVPATIDVYLISSGEGTQS-AAMQLAERVRDVLPTLKLMT 362

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +   G     Q   AD  G  + +I+G   V+  +V +K    G +E ++  +V    +
Sbjct: 363 NY--GGGNFKKQITRADKWGARVALILGESEVAAQQVVVKDLRNGEQETLAQADVAARLA 420


>gi|331007914|ref|ZP_08330984.1| Histidyl-tRNA synthetase [gamma proteobacterium IMCC1989]
 gi|330418274|gb|EGG92870.1| Histidyl-tRNA synthetase [gamma proteobacterium IMCC1989]
          Length = 423

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/425 (14%), Positives = 129/425 (30%), Gaps = 32/425 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        + + +    ++    E+  P +++ DL+  S G   D   KEM  
Sbjct: 9   GMNDLLPQQSATWQYLESAVSSILDQYNYKEIRFPIMETTDLFKRSIGEVTDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN  ++   P            H   Y       +     FR E   +    R R+F
Sbjct: 69  FADRNGDSVTLRPEGTASCVRACEQHGLLYNQ-TQKLWYHGPMFRYERPQKG---RLRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +F             + ++           ++ +   S             L D
Sbjct: 125 HQIGVETFGFDGPDIDA--ELLLLTARLWKQLKINHAVVLEINSLGTPASRGRYKAALID 182

Query: 216 -----TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                 G+      +     P+   ++   D  +L +   Q        +  H   L D 
Sbjct: 183 YLNPLKGQLDEDSQRRLSTNPLRILDSKNTDTQALLADAPQLHDFIEDEAKAHFVALTDI 242

Query: 271 LP------ENKRVSARGIEV--GHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           L          +   RG++     +F       G + ++     + G   +       + 
Sbjct: 243 LKAADIPYRVNQRLVRGLDYYDYTVFEWVTDQLGAQGTVCAGGRYNGLVEQLGGRPTAAV 302

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G+        ++  + +        +   +   ++++           EK+   L     
Sbjct: 303 GLAMGVERLVLLLETLNVLPDNVASTPDIY---IVSVGDVMPYALSVAEKLRDDLLDANI 359

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVIN 436
              +   G    +Q   AD  G  + +I+G        + +K+  +G  ++ +++EE I 
Sbjct: 360 CSHF--GGGSFKNQMKKADKSGANMALIIGEDEKQQQLLTVKYLRSGDPQKTITVEEFIT 417

Query: 437 YASHR 441
              HR
Sbjct: 418 LFKHR 422


>gi|296109164|ref|YP_003616113.1| histidyl-tRNA synthetase [Methanocaldococcus infernus ME]
 gi|295433978|gb|ADG13149.1| histidyl-tRNA synthetase [Methanocaldococcus infernus ME]
          Length = 406

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 68/412 (16%), Positives = 120/412 (29%), Gaps = 31/412 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL-WVESGRYDSYGKEMLRL 96
           G   + P   K    V   +RE     G  E+  PT +S +L   ++G  +   K++   
Sbjct: 7   GTRDFTPEEMKKRRYVEKKLREVFESYGYEEILTPTFESFELIAKKTG--EEIRKQLYVF 64

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   + +   P     +   + + +K+Y   P   Y     FR E        R REF 
Sbjct: 65  KDHGGRELSLRPEMTSPVVRFYLNELKNYPK-PLRLYYFANCFRYERPQAG---RFREFW 120

Query: 157 MKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRL-------GLKSIPMRAESGPIGGDLSH 208
                              N        I           G+    +R        ++  
Sbjct: 121 QMGCELIGCKREVADAEVINLAIDGLKNIDVEFSLEIGHLGVLRGILRKFKVGEEEEVKI 180

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ----WTAPYAATSDVHN 264
             ++  +  E+      + +D        +  ++     I+E+          +   V N
Sbjct: 181 RRLIDKEDYESLDKYLTEILDKEKRDLIFNILELKGGKEILEEAKELLKDFPESLEAVRN 240

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
            +       +      GI  G  +Y G  +                         G    
Sbjct: 241 LENILKYTYDNYKINFGIARGLDYYTGMVF-EIYGKKGAKQICGGGRYDNLIETFGGEPE 299

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
            A       D   +     +   K  +I +    +       +I   L K G  V     
Sbjct: 300 PAVGFAYGFDRIMMNVDIEIKEEKYLVIPLN---ENLIVKAMEIANILRKKGKKVEL--- 353

Query: 385 GEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            E +G +   A    +  G    VIVG K V + KV IK   +G ++ + +E
Sbjct: 354 -EIMGRKLRKALDYANSKGISKVVIVGEKEVKEGKVTIKDMESGEQKLVDIE 404


>gi|330830067|ref|YP_004393019.1| histidyl-tRNA synthetase [Aeromonas veronii B565]
 gi|328805203|gb|AEB50402.1| Histidyl-tRNA synthetase [Aeromonas veronii B565]
          Length = 415

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/409 (14%), Positives = 121/409 (29%), Gaps = 22/409 (5%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               V  I+R+     G  E+ +P ++   L+  + G   D   KEM    DRN  ++  
Sbjct: 11  VWQKVEQILRQVVASYGYSEVRMPIVEQTHLFKRAIGEVTDVVEKEMYTFEDRNGDSLSL 70

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y      +Y +   FR E   +    +  +F ++        
Sbjct: 71  RPEGTASCVRAGIEHGLLYNQERRMWY-MGPMFRHERPQKGRYRQFHQFGVELFGINGPD 129

Query: 167 PEGSKHSYNKMFVSYLRIFHRLG-LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
            +               I   +    +   ++       D    ++      +      +
Sbjct: 130 IDAELIMLTHRLWRLFGISEHVTLQLNTLGQSAERAAYRDALVAYLEQY-KEQLDEESQR 188

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSA 279
                P+   ++  + + ++ +   +        S  H E L   L       E      
Sbjct: 189 RMYSNPLRVLDSKDEKVQAILAGAPRLFDHLGEESLAHFEGLKRLLESAGIKYEVNERLV 248

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG++  ++  F    S   +     A G+   +     G     V  A+           
Sbjct: 249 RGLDYYNLTVFEWVTSSLGAQGTVCAGGRYDGLVEQLGGQPTPAVGFAMGMERLVLMLET 308

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM------GEQIGSQFA 393
              +        + +    +    A  ++  RL     D   D        G     Q  
Sbjct: 309 LELNADIRPAVDVYLAMVGEGTEQAGFQLAERLR----DALPDLRLMSHCGGGNFKKQLK 364

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHR 441
            AD  G  + +I+G   V + ++ IK+ R    ++ + ++  I   + +
Sbjct: 365 RADKSGAAIALILGETEVQNGEITIKYLRGQAEQQTVKVDAAIALLAAK 413


>gi|289581656|ref|YP_003480122.1| glycyl-tRNA synthetase [Natrialba magadii ATCC 43099]
 gi|289531209|gb|ADD05560.1| glycyl-tRNA synthetase [Natrialba magadii ATCC 43099]
          Length = 630

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 81/295 (27%), Gaps = 15/295 (5%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                     +                           +                   T 
Sbjct: 330 LSGERAHYAADCWDAESEIDGNWIEMAGFAYRSDYDLSKHAEYSEDRFTVFRQYDEPKTV 389

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKR 276
           E            P              +      TA  +A  D   E   D   P +  
Sbjct: 390 ERATVDPDMSYLGPEFGGAAQDVVDELESLAGRDRTAFESAAQDAAEESSGDGTEPRDSD 449

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH--- 333
                ++ G       + +   +   +   G+     +     G  R+V  V+  ++   
Sbjct: 450 SVEIELD-GERHEIPVEKT-GFAVEEQTEAGEHILPHVVEPSFGVDRLVYTVLHHAYAED 507

Query: 334 -----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                +   +     VAP  + +  +  +D       ++I A L  VG  V +DD G  I
Sbjct: 508 EVDGEERTYLALDPEVAPTFVGVFPL-QNDDELESTADEIVADLRDVGLSVTYDDSG-NI 565

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGIREDMSLEEVINYASHR 441
           G ++   D +G P  V V  + + +    V ++ R T  ++ +S+ E+    +  
Sbjct: 566 GRRYRRQDEVGTPFCVTVDYETLENEETTVTVRERDTTDQKRLSVSELPGIMAEL 620



 Score = 57.4 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 24  KLMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQS 76
           +L  R G   Q S       G Y++ P G     NV    R+      G +E+  PT+  
Sbjct: 40  ELAKRRGYFFQSSGAYGGVGGFYTFGPQGAALKGNVEDAWRDRFAVAEGNMEIDAPTIMP 99

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKA 103
             ++  SG  D +   ++   +  +  
Sbjct: 100 EPVFEASGHLDGFDDMLVECPECGESH 126


>gi|156937646|ref|YP_001435442.1| Ser-tRNA(Thr) hydrolase [Ignicoccus hospitalis KIN4/I]
 gi|156566630|gb|ABU82035.1| Ser-tRNA(Thr) hydrolase [Ignicoccus hospitalis KIN4/I]
          Length = 462

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/428 (13%), Positives = 114/428 (26%), Gaps = 46/428 (10%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
              G   +   G      +  ++ +   R G   +  P +    L+  +G    + KE +
Sbjct: 36  VGAGNPLFSVGGGVLRTALKHVLHKYHARKGYYVVETPIIARTTLYELTGHL-KFYKENM 94

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRS---HIKSYRNLPFTFYQIQLKFRDELRPR-FGVM 150
            L +         P +      IF +      S   LPF  ++     R E+     G++
Sbjct: 95  FLLNIEGDEYAIKPMNCPFHVLIFMNLLQKYSSKVKLPFKIFETGTVHRYEIAGALRGLL 154

Query: 151 RSREFLMKDAYSFDLTPEGS---KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           R R F   DA+ F             +  M   Y ++F+            S      + 
Sbjct: 155 RVRAFTQDDAHLFSPEEHVEASLMEVFEMMKDVYEKLFYIPVTSETVKLRLSLSDKSKIG 214

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            EF+   +  E          +                    E   A Y    DV   + 
Sbjct: 215 EEFMGEPEMWEFA-------EEKLFKVAEEVKRKYGIEFFAEEGEAAFYGPKLDVVVYEE 267

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                +  ++     +    F    ++ L            + Y+   +      R +  
Sbjct: 268 G---GKEWQIGTAQFD----FNLPKRFKLHELIKETHGLDANLYMIHRALLGSLERFLGI 320

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW------ 381
            +E                        +  D+  ++   K+   L +    V        
Sbjct: 321 YLEMFKGRLPFSLAPLQVLVIEITTGNEEVDKKIKELSSKVVNSLKENEIRVASLTSTKT 380

Query: 382 ----DDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK----HRLTGIREDMSLE 432
               D    E           +  PL + +G +   +S V  +    ++    +  +  +
Sbjct: 381 HLSRDVRKVES---------TVKPPLILYIGGREAEESAVVARPYDHNKRRREQMKLKAD 431

Query: 433 EVINYASH 440
           EV+     
Sbjct: 432 EVLKVIEE 439


>gi|315612039|ref|ZP_07886956.1| histidine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
 gi|315315841|gb|EFU63876.1| histidine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
          Length = 426

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 121/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIKGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKEAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I    +       ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGEGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+    + + +G   V   +V +K+  T     +SL+ +    S  F  
Sbjct: 375 DVFAAKILITLGESEVESGQVTVKNNQTREEVQVSLDAINQNFSEIFEK 423


>gi|257053054|ref|YP_003130887.1| histidyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
 gi|256691817|gb|ACV12154.1| histidyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
          Length = 434

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 65/427 (15%), Positives = 123/427 (28%), Gaps = 42/427 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P    A   V   + +   R G  E++ P L+   ++  +SG  +   +++   
Sbjct: 7   GFRDFYPAEMAAHREVIDTVEDTAARYGFREIATPALEETRMYVEKSG--EEIVEDLYSF 64

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +  +     +   + P  +Y  +  +R E  P+ G  R  EF 
Sbjct: 65  EDQGGRDVALTPELTPTVARMVV-EKQQALSKPIKWYSTRPFWRYE-EPQQGRFR--EFY 120

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +   F      +           L             R     I G L   F    D 
Sbjct: 121 QTNVDIFGSEEPEADAEILAFAADALTNLGLDADDFDF-RVSHRDILGGLLEAFDADVDQ 179

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPEN 274
               +                   +        EQ+ A  A     ++ +    D + + 
Sbjct: 180 -RAAIRAVDKSAKIEEAEYYDLLTESGLSYDQAEQFDALLATDDLDELTDFAGTDRVADA 238

Query: 275 ----------------------KRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDH 310
                                    +ARG++   G +F           A F G    D 
Sbjct: 239 VENLEAVLAAAEDFGVREYTTISLETARGLDYYTGVVFECFDSVGEVSRAVFGGGRYDDL 298

Query: 311 YVQMGSYGI---GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
               G       G    V          +  +WP+        ++ +       R    +
Sbjct: 299 IESFGGQPTPAVGVAPGVMNSTLPLLLQRAGVWPEEELSTDYYVLQVGD----TRSVASR 354

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I   L + G  V  D      G Q   AD +     +IVG + + + ++ IK   +G + 
Sbjct: 355 IARELRERGHVVETDVSDRSFGGQLDYADSINAETAIIVGERDLENDEITIKDMASGDQV 414

Query: 428 DMSLEEV 434
            + + + 
Sbjct: 415 QVPVADF 421


>gi|193213437|ref|YP_001999390.1| histidyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
 gi|229558644|sp|B3QQI7|SYH_CHLP8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|193086914|gb|ACF12190.1| histidyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 430

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/418 (13%), Positives = 113/418 (27%), Gaps = 28/418 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLA-DRNDKAMIY 106
              V  +IR      G  E+  P  +  +L+        D  GKEM     D N +++  
Sbjct: 21  WHYVEGVIRSVAELYGFSEVRTPVFEYTELFQRGIGATTDIVGKEMFTFQPDPNGRSLTL 80

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +           ++     Y I   FR E        +  +F  +     +  
Sbjct: 81  RPEMTAGVMRACLQKNLLSQSPVSKLYYISDLFRKERPQAGRQRQFTQFGAELLGVSNPA 140

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGETQ 220
                 ++     S L +       +     +      +   ++ +         + E  
Sbjct: 141 AVAEVLTFMMQVFSSLGLHGLRLRINSLGDLDDRARYREALRDYFMPYQNDLDEPSKERL 200

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLN-----SIVEQWTAPYAATSDVHNEKLFDSL-PEN 274
                  +D   P+          L        V  +    +   D       D L    
Sbjct: 201 EKNPLRILDSKNPALQEMIAGAPRLYASLKPESVADFEKVLSYLDDRQIAYDVDHLLVRG 260

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                           G + ++     + G     G  + +    + +G  R++ A+ + 
Sbjct: 261 LDYYCHAAFEVTSSELGAQDAIGGGGRYDGLARELGASNDLPAVGFAVGMERLMIAMEKQ 320

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                       V                  D   ++  RL K G     D  G  + +Q
Sbjct: 321 GLFATLNPHGPLVYVVVQQK--------ELTDHAMQVAFRLRKSGLKTEIDLAGRSMKAQ 372

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS--NNRP 447
              A+ +G    + +G   +      +K+  T  +  + L+ +I       S  + RP
Sbjct: 373 MRDANRMGAAYALFIGQSEMESGHYALKNLETSEQTSLDLDAIIEVLHEAVSQESARP 430


>gi|284931606|gb|ADC31544.1| Prolyl-tRNA synthetase [Mycoplasma gallisepticum str. F]
          Length = 474

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 74/431 (17%), Positives = 150/431 (34%), Gaps = 72/431 (16%)

Query: 19  EIASHKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA 77
           E+ S        +IH  + KG  S+LP G K    +   + +E ++   +E+ +P+L S 
Sbjct: 21  EVISK-----GNLIHYSNIKGFMSFLPNGWKIWQLIKKELTKEFDQRDILELCLPSLISQ 75

Query: 78  -DLWVESGRYDSYGKEML--RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            D  +E    + +  E+          +  I  PT E    +++R  +++YR LP    Q
Sbjct: 76  NDFLLEKKHLEGFAPELFIVTKTSNETEKYILRPTSEIAFCNLWRETLRNYRQLPIKHNQ 135

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
               FR E   R   +R+ EF   + +S   T E S      ++  Y R           
Sbjct: 136 WTSVFRVEKNTRP-FLRNSEFFWHEIHSCFETEEQSNDFAVDIWKLYQRFIKD------- 187

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                                     + C          +E                   
Sbjct: 188 --------------------------ILCIPLVAGEKTEAEK------------------ 203

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              A +    E +    P+ +      ++          +S      ++  +     V  
Sbjct: 204 FAGAKTTYTVETIM---PDGQ-----ALQSATSHNLSQNFSKAFDIRYQTKNNDYQNVFS 255

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI-KAHDQVCRDACEKIYARLS 373
            S G+ + R++ A+I +  D +G+++P  VAP+ ISL  I    +Q      +++  + S
Sbjct: 256 MSAGV-STRIIGAIIMTHGDNEGLVFPTKVAPYHISLNCIFDDTNQELNAKLKELANKYS 314

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +    V  +            + L G    +++G   +  +++    R++  ++ ++L+ 
Sbjct: 315 QK-YRVHLNLNKYSTVEIIKNSQLRGDCCVLLMGPNDLKKNEIVFIDRISKQKQFINLDH 373

Query: 434 VINYASHRFSN 444
           +       FS 
Sbjct: 374 LDQKLEELFST 384


>gi|293375175|ref|ZP_06621462.1| histidine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|292646212|gb|EFF64235.1| histidine--tRNA ligase [Turicibacter sanguinis PC909]
          Length = 469

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/414 (14%), Positives = 114/414 (27%), Gaps = 13/414 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y  LP       NV ++IRE  +     E+  P  +S  L+  S     D   KE   
Sbjct: 8   GTYDVLPKDSARWQNVESLIREICSIFNYKEIRTPMFESTQLYHRSAGETSDVVSKETYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR D+ M   P     +   +  +      +    + I   FR E + +    +  +F
Sbjct: 68  FKDRGDRMMTLRPEGTAGVVRSYIENKMYADQMVQKMFYIGPMFRYERQQKGRYRQHIQF 127

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP-IGGDLSHEFIVLA 214
                      P       +     Y  +  R     +    ++        +       
Sbjct: 128 --GTEVFGSADPSIDAEVISLAVTLYKVLGLRNIKVKLNSLGDTESRENYRAALLAHFEG 185

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP-- 272
              E    C       P+   +   D    +     Q           +   +   L   
Sbjct: 186 HKEELCADCQVRLEKNPLRVLDCKVDRNKEIMQSAPQMIDHLTEEDKAYFMNVQKYLKAM 245

Query: 273 ------ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                 +   V         IF    +     S       G+ + +     G     +  
Sbjct: 246 GIEYEYDASLVRGFDYYTHTIFEIQAEIKGFGSQNTLCGGGRYNKLVAELGGPTVPAIGF 305

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +               VA      + +    +  +    ++   L   G     D +G+
Sbjct: 306 GMGLERLLLALEAENIQVAGEDAVDLFLITLGEDAKVFGSRLLLDLRSRGLACETDYLGK 365

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +  QF  AD        I+G + +    + IK+  TG +E + +  VI+Y   
Sbjct: 366 NLKGQFKQADRYHARYTAILGDEELQHGMINIKNNQTGTQESIPVGFVIDYIIE 419


>gi|296242907|ref|YP_003650394.1| glycyl-tRNA synthetase [Thermosphaera aggregans DSM 11486]
 gi|296095491|gb|ADG91442.1| glycyl-tRNA synthetase [Thermosphaera aggregans DSM 11486]
          Length = 581

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 75/221 (33%), Gaps = 12/221 (5%)

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
           F  P E T      S++ I E +   Y+       EK    L     +   G    + F 
Sbjct: 360 FEKPLEKTVKKAYPSVSKIREVFGDMYSEVMKKLLEKQPTEL--YALLENTGFIEVNGFK 417

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK--------GIIWP 341
            G ++        +   G      +     G  R++  V+E+S   +             
Sbjct: 418 LGREF-FIFKEEVEKVHGVKIVPHVVEPSFGLERLLYVVLENSLKTREEKTVLALPPQIA 476

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
                    +   K   +   +   K Y  L   G +  +DD    IG ++A  D +G P
Sbjct: 477 PYHVAVFPLVTGSKPEHRRIVELARKTYWDLINAGFNCIYDD-DGSIGRRYARVDEIGVP 535

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           L V V  + + D  V ++ R T  +E + L  +  Y + + 
Sbjct: 536 LAVTVDYQSIEDETVTVRDRDTTQQERVHLGNLKKYLAEKL 576



 Score = 51.3 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 2/108 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIRE--EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
            G Y + PLG      +  +  +    +    +E+  P +    ++  SG  +S+   + 
Sbjct: 32  AGFYDYGPLGVLLKRRIQDLWLKYFVYSNDMVVEVETPIINPRVIFKASGHEESFTDPVT 91

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
                     +     E +  +      + Y+ +             E
Sbjct: 92  ECLKCGRIYRVDHLLKEVLGVEAEGLSPEEYKKIIIEKNVKCPACSGE 139


>gi|325842216|ref|ZP_08167633.1| histidine--tRNA ligase [Turicibacter sp. HGF1]
 gi|325489683|gb|EGC92042.1| histidine--tRNA ligase [Turicibacter sp. HGF1]
          Length = 469

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/414 (14%), Positives = 114/414 (27%), Gaps = 13/414 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y  LP       NV ++IRE  +     E+  P  +S  L+  S     D   KE   
Sbjct: 8   GTYDVLPKDSARWQNVESLIREICSIFNYKEIRTPMFESTQLYHRSAGETSDVVSKETYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR D+ M   P     +   +  +      +    + I   FR E + +    +  +F
Sbjct: 68  FKDRGDRMMTLRPEGTAGVVRSYIENKMYADQMVQKMFYIGPMFRYERQQKGRYRQHIQF 127

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP-IGGDLSHEFIVLA 214
                      P       +     Y  +  R     +    ++        +       
Sbjct: 128 --GTEVFGSADPSIDAEVISLAVTLYKVLGLRNIKVKLNSLGDTESRENYRAALLAHFEG 185

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP-- 272
              E    C       P+   +   D    +     Q           +   +   L   
Sbjct: 186 HKEELCADCQVRLEKNPLRVLDCKVDRNKEIMQSAPQMIDHLTEEDKAYFMNVQKYLKAM 245

Query: 273 ------ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                 +   V         IF    +     S       G+ + +     G     +  
Sbjct: 246 GIEYEYDASLVRGFDYYTHTIFEIQAEIEGFGSQNTLCGGGRYNKLVAELGGPTVPAIGF 305

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +               VA      + +    +  +    ++   L   G     D +G+
Sbjct: 306 GMGLERLLLALEAENIQVAGEDAVDLFLITLGEDAKVFGSRLLLDLRSRGLACETDYLGK 365

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +  QF  AD        I+G + +    + IK+  TG +E + +  VI+Y   
Sbjct: 366 NLKGQFKQADRYHARYTAILGDEELQHGMINIKNNQTGTQESIPVGFVIDYIIE 419


>gi|292489046|ref|YP_003531933.1| histidyl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|291554480|emb|CBA22007.1| Histidyl-tRNA synthetase [Erwinia amylovora CFBP1430]
          Length = 450

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 57/412 (13%), Positives = 123/412 (29%), Gaps = 23/412 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        V  ++++  +  G  E+ VP ++   L++ + G   D   KEM  
Sbjct: 35  GMNDYLPAETAVWQRVEQVLKQVLSSYGFSEIRVPIVEQTPLFLRAIGEVTDVVEKEMYT 94

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF---RDELRPRFGVMRS 152
             DRN +++   P            H   Y      +Y   +       + R R      
Sbjct: 95  FDDRNGESLSLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRYERPQKGRSRQFHQIG 154

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + K        +   + +G            +     H 
Sbjct: 155 AEVFGLQGPDIDAELIMMTARWWKALGIADHVVLELNSIGSLQARANYRDALVAFLEQHV 214

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEK-- 266
            ++  D            +D   P      +D  +L   ++  +   +A      +    
Sbjct: 215 EMLGEDCKRRMYSNPLRVLDSKNPDVQALLNDAPTLGDYLDDESREHFAGLCRHLDAAGI 274

Query: 267 ---LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L        R +        G + ++     + G   +       + G     
Sbjct: 275 AYRVNQRLVRGLDYYNRTVFEWVTDKLGAQGTVCAGGRYDGLVEQLGGHATPAVGFAMGL 334

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
               ++                P ++  + + A  Q  + A   +  +L        +  
Sbjct: 335 ERLVLLV-------QAVNPEFEPTRVVDVYVIAAGQGVQSAALLLAEQLRDALPELKLMS 387

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +  G     QFA AD  G  + +++G   V++ ++ IK   TG ++ ++  +
Sbjct: 388 NLGGGSFKKQFARADKWGARIALVIGEDEVANGQLVIKDLRTGEQQTLAQGD 439


>gi|212223791|ref|YP_002307027.1| glycyl-tRNA synthetase [Thermococcus onnurineus NA1]
 gi|212008748|gb|ACJ16130.1| glycyl-tRNA synthetase [Thermococcus onnurineus NA1]
          Length = 567

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/409 (13%), Positives = 122/409 (29%), Gaps = 72/409 (17%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R +  +   LPF  +QI   +R+E+ PR G++R REF   +A  F
Sbjct: 158 YLRPETAQGIFVNFRRLNAFARNKLPFGVFQIGKAYRNEISPRQGMLRLREFTQAEAEIF 217

Query: 164 DLTPEGSKHSYNKMFVSYLRIFH-------------------RLGLKSIPMRAESGPIGG 204
               E     ++++    LR++                    + G       A    +  
Sbjct: 218 FNPKETEHPHFDEVKDEVLRLYPIENQLKNLGEIEMTAEEAVKKGYIMNTFFAYYMVMVK 277

Query: 205 DL------------------SHEFIVLADTGETQVFCSKDFM-DFPIPSENTDFDDIISL 245
            +                         +DT + ++   +    +    +   D+D    +
Sbjct: 278 RVLLDIGIPESAIRFRQQLPEERAHYSSDTWDVEIHSERFGWVECVGIAYRGDYDLSKHM 337

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
                  T           ++L  SL   +       +   I      +           
Sbjct: 338 KMSGADLTVLIHYDEPKIVKRLVVSLNMKRVGPKLKGDAKRINELIQSWDEEKLRNLVDV 397

Query: 306 ----------------------------DGKDHYVQMGSYGIGAMRVVA----AVIESSH 333
                                        G+     +     G  R         +    
Sbjct: 398 LERDGRITIEGYELEKDDFIIKEVEEKITGEKIVPHVLEPSFGIDRPFYLLLENSLVIED 457

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D   +     +AP +++++ + A  +  +    +++ +L K G    +D+    IG ++ 
Sbjct: 458 DRTYLRLKKDMAPIEVAVLPLVAK-EPLKSIAYEVFRKLQKAGFIAVYDEKD-TIGRRYI 515

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             D +G P  V + ++   D  V I+ R T  +  + +EE+        
Sbjct: 516 RYDEIGTPYCVTIDNQTPEDGTVTIRDRDTREQVRVKIEELPEKLRELI 564



 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 86/334 (25%), Gaps = 31/334 (9%)

Query: 23  HKLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             LM R G       I+  ++G Y + PLG      +   IRE   R G  E+  P +  
Sbjct: 9   QDLMRRRGFAWGSFEIYGGTRGFYDYGPLGATIKRKIEQKIREAFQREGFFELETPDITP 68

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +++ SG  D +   ++       +        E +  D           L        
Sbjct: 69  EKVFIASGHVDKFVDPLVECRKCGARFRADHLVEEALGIDTEGMSADHLTRLIREHDIKC 128

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH-----SYNKMFVSYLRIFHRLGLK 191
            +   EL   +       F  K     D               N   ++           
Sbjct: 129 PECGGELSDVWYFN--LMFETKIGPYGDQKGYLRPETAQGIFVNFRRLNAFARNKLPFGV 186

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
               +A    I        +      E ++F +    + P   E    D+++ L  I  Q
Sbjct: 187 FQIGKAYRNEISPRQGMLRLREFTQAEAEIFFNPKETEHPHFDE--VKDEVLRLYPIENQ 244

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY 311
                             +L E +  +   ++ G+I      Y + M        G    
Sbjct: 245 LK----------------NLGEIEMTAEEAVKKGYIMNTFFAYYMVMVKRVLLDIGIPES 288

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                  +   R   +      +     +     
Sbjct: 289 AIRFRQQLPEERAHYSSDTWDVEIHSERFGWVEC 322


>gi|309388965|gb|ADO76845.1| histidyl-tRNA synthetase [Halanaerobium praevalens DSM 2228]
          Length = 424

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/413 (13%), Positives = 123/413 (29%), Gaps = 15/413 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        +     E  +     E+  P  +  +L+    G   D   KEM    D+ 
Sbjct: 13  LPPATLKWQYIEEKTHEVFSNYNYHEIRTPIFEYTELFQRGIGEVTDIVEKEMYTFEDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            +++   P     +   F  +    +  P  +Y I   FR E        R R+F     
Sbjct: 73  GRSLTLRPEGTASVIRSFLENKIYGQAQPTKYYYIGPMFRYERPQSG---RFRQFHQLGV 129

Query: 161 Y-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTG 217
                  P       +       +        ++         P       E++      
Sbjct: 130 EAIASNDPALDAEIISLGIRLLQKFGLNELELNLNSVGCQECRPDYVAKLKEYLTKN-KE 188

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENK 275
           +    C       P+   +    +  S+ +   + T    ++ D H +++   L   E  
Sbjct: 189 QLCDNCKSRIERSPLRVLDCKNKNCQSVINSAPKITENLCSSCDEHFKEVQSYLDILEID 248

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                 +  G  +Y  T + +  +A              G       R V  +  +    
Sbjct: 249 YQINPLLVRGLDYYTNTAFEIKDNALGAQDTIFGGGRYNGLAEEIGNRDVPGIGFALGIE 308

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACE----KIYARLSKVGCDVFWDDMGEQIGSQ 391
           + ++  ++          +  +  V     +    K+  +L   G     D +   +GSQ
Sbjct: 309 RLLLSLEAKDIKLPVEAGVDLYITVIGAKAKRESFKLLDKLRSSGFKTEMDYLDRGVGSQ 368

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              AD +     +I+G   ++ +   I++  +G  +++ L  ++       + 
Sbjct: 369 MKSADRMNAEYTIIIGEDELNKNAATIRNMKSGTEKEIKLTNLLEEMKQLVAK 421


>gi|238598681|ref|XP_002394671.1| hypothetical protein MPER_05401 [Moniliophthora perniciosa FA553]
 gi|215464082|gb|EEB95601.1| hypothetical protein MPER_05401 [Moniliophthora perniciosa FA553]
          Length = 164

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 8/143 (5%)

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW-------PDSVAPFKISLINIKAHDQV 360
           ++    +     G  R++  ++E S   +           P  VAP K+ ++ + A  + 
Sbjct: 1   REFTPNVIEPSFGLGRILYTLLEHSFWSREQDIERGVLSLPPLVAPTKVLIVPLSAK-EE 59

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 +I  +L + G     DD    IG ++A  D LG P  + V    V +  V ++ 
Sbjct: 60  FDPLVNEISTKLRRAGIFSRVDDSNTSIGKRYARNDELGTPYGITVDFASVQNRTVTLRE 119

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +   S++EVI   +    
Sbjct: 120 RDTMDQRISSIDEVIATVTELVE 142


>gi|221194874|ref|ZP_03567931.1| histidyl-tRNA synthetase [Atopobium rimae ATCC 49626]
 gi|221185778|gb|EEE18168.1| histidyl-tRNA synthetase [Atopobium rimae ATCC 49626]
          Length = 437

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/427 (12%), Positives = 102/427 (23%), Gaps = 35/427 (8%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV----ESGRYDSYGKEMLRLADRNDK 102
            ++ + +  I R      G   +  P ++  D +V    ES   D   KEM R+      
Sbjct: 16  MRSWERMQDIARHLFGTYGFDRIETPAIEQVDTFVHGIGES--TDVVRKEMFRVFSGALM 73

Query: 103 AMIYGPTHEEVMTDIFRSHIKSY-----------RNLPFTFYQIQLKFRDELR---PRFG 148
             +     E  +    R  ++              N           +  E      R  
Sbjct: 74  EDLLASGSEAGLKPRQRMAMRPEGTAGVVRAAVEHNFVPQGAAPAKMWYAEAMFRGERPQ 133

Query: 149 VMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
             R R+F            P     S   +   +  +        + + +          
Sbjct: 134 KGRLRQFHQVGVEWLGASDPAADAESIIMLMQFFKELGFDTSRLKLMINSMGDAECRPAY 193

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-----------NSIVEQWTAPY 256
            E +           C        I           S            +++ +   A Y
Sbjct: 194 REKVKQFILDHADRMCDDCIERAEINPLRAFDCKNESCQAVMKDAPLISDNLCDDCRAHY 253

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                  +      + +   V         +F      +   +    G       ++ G 
Sbjct: 254 EQVKAYLDAAGIAYVEDPTLVRGLDYYTRTVFEVEALDAGIGAIGGGGRYDGLMELEGGK 313

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
              G      AV                       + +             +   L   G
Sbjct: 314 PTPGVG---FAVGFERIMLALAAQGIETDIAAPCCVYVATTSAEEAREAFSVVLALRGAG 370

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                D  G  + +QF  AD LG  L V++G   V+     ++   T  +  +  + ++ 
Sbjct: 371 IRTEADRTGRSLKAQFKQADKLGAKLCVVLGPDEVAAGVATLRDMTTHEQIQVPADRLVE 430

Query: 437 YASHRFS 443
               R +
Sbjct: 431 EVRQRLA 437


>gi|291333903|gb|ADD93583.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C385]
          Length = 206

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 51/106 (48%), Gaps = 2/106 (1%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAVADLLG 399
              ++P K ++I +K +++      + +   L  +G   V  ++ G  IG  +   D +G
Sbjct: 99  KPHLSPIKAAVIPLKKNNEDLVSLAKNVKDELQSLGKGRVLLENTG-NIGKSYRKHDEVG 157

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            P+ + +    + ++ V I+ R +  ++ + ++E+  Y S+  S N
Sbjct: 158 TPMCITIDFDSLDNNTVTIRDRDSMEQKTIQIQELTTYFSNFLSKN 203


>gi|124485242|ref|YP_001029858.1| histidyl-tRNA synthetase [Methanocorpusculum labreanum Z]
 gi|166228580|sp|A2SQI5|SYH_METLZ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|124362783|gb|ABN06591.1| histidyl-tRNA synthetase [Methanocorpusculum labreanum Z]
          Length = 410

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 63/416 (15%), Positives = 131/416 (31%), Gaps = 19/416 (4%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           MI +   G   +LP        V   +R      G  E+  P  +  +L+  +SG  +  
Sbjct: 1   MIQKPR-GTRDFLPAEMAQRRFVEQKMRAVAATFGYGEIVTPMFEELELFTIKSG--EGI 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
             EM    D+  + +   P     +   + +  +     P  ++     FR E   +   
Sbjct: 58  INEMYAFEDKGGRKITLRPEITAAVLRAYVNEAQMAPK-PLRWFYFAECFRYERPQKGRY 116

Query: 150 MRSREF--LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
            +  +F   +  A S     E    +Y  +  + +R   ++G  +      SG       
Sbjct: 117 RQFWQFGSELIGADSAAADAEVISLAYELLRCTGVRFVMKVGHLAPMKHLLSGLDAPS-Q 175

Query: 208 HEFIVLADTGETQVFCSK----DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            + +   D  +  +  +     D  D   P +       +     V       A   +  
Sbjct: 176 KQVMAALDKRDMDLLGTTLASLDSSDLFEPLKGLVTAKTLPEIFAVTGDIPEKARIEETF 235

Query: 264 NEKLFDSLP-ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                 ++P E     ARG++      F   ++  + A  +   G  + +   ++  G  
Sbjct: 236 GYLEAQNIPFEQNFGIARGLDYYTGMVF-EGFADNLGAENQILGGGVYRL---AHLFGGK 291

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V +       D   +   +        +  I   +           + L   G     D
Sbjct: 292 DVPSCGFGIGFDRVLVSLGEITPQTIPVVAVICTPETRIPAY--NAASALRSAGITAVMD 349

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +    G+Q + A   G    V++G K  +   + +K   T ++ +MS++  I   
Sbjct: 350 LLDRGFGAQLSSALKSGASFAVVIGEKEAAAGMITLKDLATAVQTEMSIDNAIEVI 405


>gi|55794131|gb|AAV65958.1| histidyl-tRNA synthetase [Lactobacillus hilgardii]
          Length = 428

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/416 (13%), Positives = 120/416 (28%), Gaps = 22/416 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G    LP   +    V  I R+  N+ G   +  P  ++ +++        D   K+M  
Sbjct: 11  GTVDILPGEIEVWQKVEKIARDTFNQFGYRGIRTPIFENYNVFARNVGDTSDIVEKQMYD 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P         +  +         P+  Y +   FR E        R R
Sbjct: 71  FDDKGGRRLALRPEGTAGTVRAYVENKLFGPEYPKPYKVYYMGPMFRYERPQSG---RQR 127

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGG 204
           +F      + +                              + LG K          I  
Sbjct: 128 QFTQIGCEALNSESPQIDVEVISEALQFFKQLGINDLKLTVNTLGDKETRDAYHKALIDY 187

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              +   +  D+ E         +D    ++     +  S+   +  ++A Y        
Sbjct: 188 LKPYYDQLSDDSKERMYKNPLRVLDSKDETDQKIVANAPSILDSLSDYSAKYFEEVKKLL 247

Query: 265 EKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           +KL     E      RG++     IF      S      +    G   Y  + S   G  
Sbjct: 248 DKLNIKY-EIDSDMVRGLDYYTQTIFEI-MSASDVFGGGYVTVCGGGRYNGLISQLGGPD 305

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVF 380
                          ++  ++         ++   + D    +   ++  ++ K G    
Sbjct: 306 EGGIGYGIGVERLLLLVQKENPDFTPKYGPDVFFASADDEGDELAFEVLDKIRKNGVSAD 365

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +    ++GSQ   A         ++G K V + K E+    +   + +S++E  +
Sbjct: 366 KNYQDVKVGSQIKEAIRRKTRYYAVIGKKEVEEGKFELSKVDSDQTQTVSVKEFED 421


>gi|254172667|ref|ZP_04879342.1| glycyl-tRNA synthetase [Thermococcus sp. AM4]
 gi|214033596|gb|EEB74423.1| glycyl-tRNA synthetase [Thermococcus sp. AM4]
          Length = 569

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 132/409 (32%), Gaps = 72/409 (17%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R +  +   LPF  +QI   +R+E+ PR G++R REF   +A  F
Sbjct: 160 YLRPETAQGMFVNFKRLNAFARNKLPFGVFQIGKAYRNEISPRQGMLRLREFTQAEAEIF 219

Query: 164 DLTPEGSKHSYNKMFVSYL--------------------------RIFHRLGLKSIPMRA 197
               E     ++++    L                           I +      + M  
Sbjct: 220 FNPKETEHPHFDEVKDEVLRLYPIEHQLKGLGEIELTAEEAVKKGYIMNTFFAYYMVMVK 279

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS--------IV 249
            +    G    +        E +   S+D  D  I SE   + + + + +         +
Sbjct: 280 RTLLDIGIPEEKIRFRQQLPEERAHYSRDTWDAEIHSERFGWVECVGIANRGDYDLSRHM 339

Query: 250 EQWTAPYAATSDVHNEKLFDSL--------------PENKRVS--ARGIEVGHIFYFGTK 293
            +  A           K+   L               + KR++   +G +          
Sbjct: 340 RESGADLTVLIHYDEPKIVRKLEVSLNLKRVGPKLRKDAKRINELIKGWDEEKKRELVGI 399

Query: 294 YSLPMSATFKGAD----------------GKDHYVQMGSYGIGAMRVVA----AVIESSH 333
                  T +G +                G+     +     G  R         +    
Sbjct: 400 LEKEGKITIEGYELERDDFIIREVEEKITGEKIVPHVLEPSFGIDRPFYLLLENSLVIEE 459

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D   +     +AP +++++ + A  +  +     ++ +L K G  V +D+    IG ++ 
Sbjct: 460 DRTYLKLKKDMAPIEVAVLPLVAK-EPLKSIAYDVFRKLQKAGFIVVYDEKD-TIGKRYL 517

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             D +G P  V + ++   D+ V I+ R T  +  + +EE+ +      
Sbjct: 518 RYDEIGTPYCVTIDNQTPEDNTVTIRDRDTREQVRVKIEELPSKLRELI 566



 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 62/224 (27%), Gaps = 13/224 (5%)

Query: 23  HKLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             LM R G       I+  S+G Y + PLG      +   IRE   R G  E+  P +  
Sbjct: 11  QDLMRRRGFAWGSFEIYGGSRGFYDYGPLGATIKRKIEQKIREAFQREGFFELETPDITP 70

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +++ SG  + +   ++       +        E +  D+     +    L        
Sbjct: 71  EKVFIASGHVEKFVDPLVECKKCGARFRADHLVEEALGMDVEGLSAEELTKLIREHDIRC 130

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH-----SYNKMFVSYLRIFHRLGLK 191
            +   EL   +       F  K     D               N   ++           
Sbjct: 131 PECGGELSDVWYFN--LMFETKIGPYGDQKGYLRPETAQGMFVNFKRLNAFARNKLPFGV 188

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
               +A    I        +      E ++F +    + P   E
Sbjct: 189 FQIGKAYRNEISPRQGMLRLREFTQAEAEIFFNPKETEHPHFDE 232


>gi|209521126|ref|ZP_03269854.1| histidyl-tRNA synthetase [Burkholderia sp. H160]
 gi|209498436|gb|EDZ98563.1| histidyl-tRNA synthetase [Burkholderia sp. H160]
          Length = 446

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 61/424 (14%), Positives = 114/424 (26%), Gaps = 25/424 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +     ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQEAGLWEFFETTVKSMLRSYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + +   FR E   R    R R+F
Sbjct: 76  FTDALNGENLTMRPENTAAVVRASIEHNMLYDGPKRLWYVGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLSGIKLEINSLGLAEERAAHRVELIAYLE 192

Query: 216 TGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                +     +     P+   +T    +  +     +        S  H E L   L  
Sbjct: 193 KHMDVLDEDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGEESRAHFEGLQRLLKA 252

Query: 274 NKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           N           RG++  ++  F       + A    A G  +   +   G         
Sbjct: 253 NNLPFTINPRLVRGLDYYNLTVFEWVTDK-LGAQGTVAAGGRYDPLIEQLGGKPTAACGW 311

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW----DD 383
            +      + +     V   +   + +       R+    I  RL   G DV      D 
Sbjct: 312 AMGIERILELLKEEQLVPEDEGCDVYVVHQGDAAREQAFIIAERLRDTGLDVILHCSADG 371

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT------GIREDMSLEEVIN 436
                 SQ   AD  G    V++G   +++  V +K  R T        ++++  E++  
Sbjct: 372 QSASFKSQMKRADASGAAFAVVLGEDEIANGTVGVKPLRDTQANGGKNEQQNVPAEDLTE 431

Query: 437 YASH 440
           +  +
Sbjct: 432 FLIN 435


>gi|168334788|ref|ZP_02692914.1| histidyl-tRNA synthetase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 416

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 61/415 (14%), Positives = 121/415 (29%), Gaps = 36/415 (8%)

Query: 46  GQKALD--NVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRND 101
           G +  +   V +IIRE     G  E+  P  +   L+        D   KEM    D+ D
Sbjct: 14  GTEIRNLQKVESIIREVCENFGIGEIRTPIFELTHLFQRGVGTATDIVQKEMYSFVDKGD 73

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
             +   P     +   +          P   Y I   FR E        R R+F      
Sbjct: 74  NNITLKPESTAAVVRAYLERNLGENAQPTKLYYISPTFRYERPEAG---RLRQFHQFGVE 130

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            F  +   +      +  + L+  +   +K               + +     +T +  +
Sbjct: 131 VFGSSAAIADAEVIAVANTLLKRLNIANVKLYINSLGGPKCREKYNQQLKNFLETKKDNL 190

Query: 222 --FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR--- 276
              C++  +  P+   +   +D   L +               H + L   L +      
Sbjct: 191 CSLCNERRIKNPLRVLDCKNEDCQKLFADAPTTLDALDPECREHFDTLTTLLTKMNIPFI 250

Query: 277 ---VSARGIEV--GHIFYF--------GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 RG++     +F F        GT              G      +G +G G  R
Sbjct: 251 VNPRIVRGLDYYTKTVFEFILDSEAYSGTICGGGRYDKLVEEIGGKAVPAVG-FGTGIER 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           ++ A +  + +                 I I        +    +   L     +   D 
Sbjct: 310 LLIAYLAENPN----------QNIATRDIFIGYRGDAAMEKAMILVNDLRSQHXNADTDL 359

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
               + +Q   A+ +G     I+G   +  + + +K+  T     +  E+++ + 
Sbjct: 360 XNRSVKAQMKYANKIGAKYATIIGETELETATLLVKNMKTYQEHQIKFEDLLKFL 414


>gi|91784206|ref|YP_559412.1| histidyl-tRNA synthetase [Burkholderia xenovorans LB400]
 gi|123168325|sp|Q13X29|SYH_BURXL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|91688160|gb|ABE31360.1| histidyl-tRNA synthetase [Burkholderia xenovorans LB400]
          Length = 446

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 62/424 (14%), Positives = 116/424 (27%), Gaps = 25/424 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +     ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQEAGLWEFFETTVKSMLRSYGYQNIRTPIIEHTQLFKRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FTDALNGENLTMRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M          +G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLMGIKLELNSLGLAHERAAHRVELIAYLE 192

Query: 216 TGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                +     +     P+   +T    +  +     +        S  H E L   L  
Sbjct: 193 KHMDVLDEEAKRRLYTNPLRVLDTKNPAMQEVAQNAPKLIDFLGEESRAHFEGLQRILKA 252

Query: 274 N------KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           N       +   RG++  ++  F       + A    A G  +   +   G         
Sbjct: 253 NNIPFTINQRLVRGLDYYNLTVFEWVTDK-LGAQGTVAAGGRYDPLIEQLGGKPTAACGW 311

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW----DD 383
            +      + +     V   +   + +    +  R+    I  RL   G DV      D 
Sbjct: 312 AMGIERILELLKEEQLVPEDEGCDVYVVHQGEAAREQAFIIAERLRDTGLDVILHCSADG 371

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT------GIREDMSLEEVIN 436
                 SQ   AD  G    V++G   +++  V +K  R T        + ++  E++  
Sbjct: 372 QTASFKSQMKRADASGAAFAVVLGEDEIANGTVGVKPLRDTNADGGKNEQHNVPAEDLTE 431

Query: 437 YASH 440
           +  +
Sbjct: 432 FLIN 435


>gi|228469877|ref|ZP_04054816.1| glycyl-tRNA synthetase [Porphyromonas uenonis 60-3]
 gi|228308512|gb|EEK17300.1| glycyl-tRNA synthetase [Porphyromonas uenonis 60-3]
          Length = 517

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 109/353 (30%), Gaps = 48/353 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  E+   AD      +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 199 FATEVGSTADGASTIYLRPETAQGIFVNYLNVQKTGRMKLPFGIAQIGKAFRNEIVARQF 258

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      +       L   + LG      R           H
Sbjct: 259 IFRMREFEQMEMQYFVQ-PGTELEWFEYWKKLRLHWHYALGFPQSDYRYHD--------H 309

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E +       T +     F                            Y     +H+   F
Sbjct: 310 EKLAHYANAATDIEYLMPF---------------------------GYKEVEGIHSRTDF 342

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     +         G    +    +      +             S   G+ +     
Sbjct: 343 DLSRHEE-------FSGKKLRYYDPETKESYIPYVVETSIGVDRMFLSVLCGSYKE--EQ 393

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            ES      +  P ++AP K++++ +   D    +   ++  RL  +     +D+    I
Sbjct: 394 TESGETRVVLSLPPALAPVKLAVLPLVRKD-GLDEKAHEVV-RLLHLDFTCQYDEKD-SI 450

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G ++   D +G P  + V  + + D+ V ++ R T  +E +++ E+ +  + R
Sbjct: 451 GKRYRRQDAIGTPYCITVDHQTLEDNTVTLRDRDTMQQERIAIAELHDLIAQR 503



 Score = 41.6 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 39 IYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
          +Y +   G +  +N+     E   R     + +        D+W  SG  D++   ++  
Sbjct: 34 VYDYGQNGVELKNNIKRYWWEAMTRLHPNVVGIDSSIFMHPDIWRASGHIDAFNDPLIDN 93

Query: 97 AD 98
           D
Sbjct: 94 KD 95


>gi|145299530|ref|YP_001142371.1| histidyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166227942|sp|A4SP01|SYH_AERS4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|142852302|gb|ABO90623.1| histidyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 425

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/409 (13%), Positives = 121/409 (29%), Gaps = 22/409 (5%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               V  I+R+     G  E+ +P ++   L+  + G   D   KEM    DRN  ++  
Sbjct: 21  VWQKVEQILRQVVASYGYSEVRMPIVEQTHLFKRAIGEVTDVVEKEMYTFEDRNGDSLSL 80

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y      +Y +   FR E   +    +  +F ++        
Sbjct: 81  RPEGTASCVRAGIEHGLLYNQERRMWY-MGPMFRHERPQKGRYRQFHQFGVELFGINGPD 139

Query: 167 PEGSKHSYNKMFVSYLRIFHRLG-LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
            +               I   +    +   ++       D    ++      +      +
Sbjct: 140 IDAELIMLTHRLWRLFGISDHVTLQLNTLGQSSERAAYRDALVAYLEQY-KDQLDEESQR 198

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSA 279
                P+   ++  + + ++     +        S  H E L   L       E      
Sbjct: 199 RMYSNPLRVLDSKDERVQAILVKAPRLFDHLGEESLAHFEGLKRLLESAGIKYEVNERLV 258

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG++  ++  F    +   +     A G+   +     G     V  A+           
Sbjct: 259 RGLDYYNLTVFEWVTTSLGAQGTVCAGGRYDGLVEQLGGQATPAVGFAMGMERLVLMLET 318

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM------GEQIGSQFA 393
              +        + +    +    A  ++  RL     D   D        G     Q  
Sbjct: 319 LELNADIRPAVDVYLAMVGEGSEQAGFQLAERLR----DALPDLRLMSHCGGGNFKKQLK 374

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHR 441
            AD  G  + +I+G   V + ++ IK+ R    ++ ++++  I   + +
Sbjct: 375 RADKSGAAIALILGETEVQNGEITIKYLRGQAEQQTVTVDAAIALLAAK 423


>gi|251798352|ref|YP_003013083.1| histidyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247545978|gb|ACT02997.1| histidyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 416

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/423 (14%), Positives = 116/423 (27%), Gaps = 21/423 (4%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q S G    LP   +         R+   R    E+  P  ++ +L+        D 
Sbjct: 1   MAFQKSPGTQDILPGVVERWQYAEQKARDICRRFNFREIRTPIFEATELFQRGVGETTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR D+++   P     +   +  +           Y I   FR E +    
Sbjct: 61  VEKEMYTFTDRGDRSITLRPEGTAGVVRSYVENKLYGEPDVSKLYYIGPMFRYERQQAG- 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+F      +              +  ++       G++       +  +      
Sbjct: 120 --RYRQFHQFGIEALGSVEPAIDAEVIALGYTFFTEVGLKGVRVEINSVGTPAVRAAFRE 177

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-----YAATSDVH 263
           + +        Q+       D     E      +           AP            H
Sbjct: 178 KLLAFLMPMREQL-----CKDCQSRMERNPLRVLDCKTDQARFEAAPSILDSLDEECTTH 232

Query: 264 NEKLFDSLPENKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            EK+   L +            RG++      F  K     +    G  G+ + +     
Sbjct: 233 FEKVKTCLSDMGIPFTINPRLVRGLDYYTHTAFEYKAEGIGAIDTIGGGGRYNGLVAEIG 292

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G     V   +               +       + + A  +       ++   L   G 
Sbjct: 293 GPDQPGVGLGLGLERTIMLLEHQQAELDNAHQVDVYVVALGEAADREVTRLVYELRTSGI 352

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
               D +G ++ +Q   AD L      I+G   +   ++ +K   TG +  ++L  + + 
Sbjct: 353 RAERDYLGRKMKAQMKSADRLQARYTAILGDDELERGEIALKEMATGEQRVVALASLASE 412

Query: 438 ASH 440
              
Sbjct: 413 LKS 415


>gi|238753874|ref|ZP_04615234.1| Histidyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
 gi|238707862|gb|EEQ00220.1| Histidyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
          Length = 414

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/416 (12%), Positives = 119/416 (28%), Gaps = 19/416 (4%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLAD 98
            +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM    D
Sbjct: 3   DYLPADTALWQRIEGTLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFDD 62

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF---RDELRPRFGVMRSREF 155
           RN +++   P            H   Y      +Y   +       + R R       E 
Sbjct: 63  RNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRYERPQKGRYRQFHQLGAEV 122

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
                   D         + K            + +G  +         I     H+ I+
Sbjct: 123 FGLQGPDIDAELILLTARWWKALGISEHVHLELNSIGSLAARADYREALIAFLEQHQDIL 182

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSL 271
             D            +D   P      ++   L+  +++ +   ++   ++ +       
Sbjct: 183 DEDCKRRMYSNPLRVLDSKNPEIQQLLNEAPRLSEYLDEDSKQHFSGLCELLDHAGIPYS 242

Query: 272 PENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
              + V         +F       G++ ++     + G   +       + G        
Sbjct: 243 VNERLVRGLDYYNRTVFEWVTTSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERL 302

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            ++          +    A     + + +          E +   L  +     +   G 
Sbjct: 303 VLLVQ---AVNPEFAPQPAVDIYLVSSGQGTQSAAMQLAETLRDALPSLKLMTNY--GGG 357

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               QFA AD  G  + +++G   VS  +V +K    G +E ++  +V    +   
Sbjct: 358 NFKKQFARADKWGARIALVLGEDEVSAQQVVVKDLRKGEQETLAQADVAARLASML 413


>gi|282890618|ref|ZP_06299141.1| hypothetical protein pah_c022o225 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499615|gb|EFB41911.1| hypothetical protein pah_c022o225 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 556

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/444 (12%), Positives = 131/444 (29%), Gaps = 50/444 (11%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGI--YSWLPLGQKALDNVNAIIR 58
           M+   +     +           ++ L          GI  + WLP G+     V     
Sbjct: 147 MKV--FLKKWTRHKKNQHVHLGQEMELF------LPAGISSWVWLPRGESLRAAVLKWCE 198

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
                 G  ++ +  L   + +      +   +E   + ++ ++  +   T         
Sbjct: 199 NGYAANGYQKIGMTGLLPLEHFSFKPSVEKKIREQSWIVEKEEEEYVLPSTQLSSAFFAA 258

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            +          +  +      D+L    G+++S+   M +AY F LT +          
Sbjct: 259 SALCSFPLRFFESEKRFSPAASDQLD---GLLKSQTCEMSNAYLFCLTEQVLHELI-SSL 314

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                     G ++                           +   +K      I   +  
Sbjct: 315 QFIEETVKVFGFEAQWYLY------------------PKAEKNAAAKKQWPQAIAFLHEA 356

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
                    + E +++      +V   KLFDSL    +        G    F    +   
Sbjct: 357 LKFCHLNYQVEEAFSSWRGPRIEV---KLFDSLNRQWK--------GPQLEFDLFSAESF 405

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +   +    +     +    +G+     A++   ++G+   W   +AP ++ +  I    
Sbjct: 406 ALASQAKGLQSTPWVIRWTALGSTERWIALLIEQNEGRLPFW---LAPEQVRIFPIG--- 459

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   +  +KI   +      V  D     +  +   A     P  VIVG K   ++++ +
Sbjct: 460 EKVIEYAKKIQVLMLNQNLRVAIDKRQHPLAEKIYDATRQRVPYLVIVGDKEERENRLTV 519

Query: 419 KHRLTGI-REDMSLEEVINYASHR 441
           +       + D+ +++ +   S  
Sbjct: 520 RSFDDKTAKTDVEIKDFLALLSKE 543


>gi|218282368|ref|ZP_03488650.1| hypothetical protein EUBIFOR_01232 [Eubacterium biforme DSM 3989]
 gi|218216654|gb|EEC90192.1| hypothetical protein EUBIFOR_01232 [Eubacterium biforme DSM 3989]
          Length = 458

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/403 (13%), Positives = 116/403 (28%), Gaps = 17/403 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLA-DRNDKAMIYG 107
              +   +R         E+  P  +  +++  E+   D   KEM     + +  ++   
Sbjct: 42  WQALEQTLRSFCYMYNYDEIRTPIFEHTEVFKRENDSSDMVNKEMYTFKLENSKTSLTLR 101

Query: 108 PTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   F  + + +  +LP  FY +    R E   +  +    +F ++       +
Sbjct: 102 PEGTAGVVRSFVENKMYANPDLPAKFYYMGPMSRHERPQKGRMRIFNQFGVEALG--VKS 159

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCS 224
           P     +    F     +        +    +  S         E+       E    C 
Sbjct: 160 PYVDVETIVLAFSILKSLGLNDIKVCLNTLGDDESRANYRSALKEYFAPY-VDELCSDCK 218

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENKR 276
           + +   P+   +   D          + +      S  +   + + L         ++K 
Sbjct: 219 RRYEQNPLRILDCKVDHDHECMKNAPKMSDYLNEASQEYFNTVCELLDKLEIPYEVDDKL 278

Query: 277 VSARGIEVGHIFYFGTKYSLP-MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
           V         +F   +  S     +T       D  +       G   +  A+       
Sbjct: 279 VRGLDYYTHTVFEIVSMNSEMGAQSTVLAGGRYDGLISYFGGPEGMSGIGWALGMERLLI 338

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +         +   D   R    ++   L   G     D M     +QF   
Sbjct: 339 ALEAEGIELETKPALDAYVMCLDPEARTYAFEVLTSLRAYGYRCDMDMMERSFKAQFKAV 398

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           D     L +++G   + + KV +K+     +E + +E++I Y 
Sbjct: 399 DRSKAKLAILIGKSELEEKKVTVKNIAHKEQESIEVEKLIPYV 441


>gi|159479048|ref|XP_001697610.1| organellar class II aminoacyl tRNA synthetase [Chlamydomonas
           reinhardtii]
 gi|158274220|gb|EDP00004.1| organellar class II aminoacyl tRNA synthetase [Chlamydomonas
           reinhardtii]
          Length = 580

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 123/427 (28%), Gaps = 68/427 (15%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRLAD---- 98
           P G    ++V  ++       G      P L     +  E+   + +  E+  +      
Sbjct: 119 PYGYSIWESVQGVLDARFKELGVQNAYFPQLIPYSFITKEAEHVEGFAPELALVTKGGVC 178

Query: 99  ----------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
                               T   V   +    ++SYR+LP    Q     R E+R R  
Sbjct: 179 VGGGNTVRRRSVRSVRPCTCTCVGVCCHVLWGWVQSYRDLPLLINQWCNVHRWEMRTRP- 237

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            +R+ EFL ++ ++   T E ++     M   Y          +    A     G     
Sbjct: 238 FVRTLEFLWQEGHTAHATAEEAEAEARAMIDVYT-------HFATHTAAMPVVPGRKSRI 290

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E       G       K        S                 +    A    ++     
Sbjct: 291 ESFAGGRRGRDGGGAIKSMWQTQTGSAPAPAAAYSPPYPS--HYVHHLAPAPHLYTNSHP 348

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            SL                                            S+G+ + R++  V
Sbjct: 349 ISL---------------------------------HLMHLCVFDQTSWGV-STRIIGGV 374

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQV---CRDACEKIYARLSKVGCDVFWD-DM 384
           I +  D KG+  P  +AP ++ +I I   ++      +A  ++ A     G  V  D D 
Sbjct: 375 IMTHGDDKGLRLPPRLAPIQVVIIPIVKKEEDRVPVNEAAARLAAAAKAAGIRVKVDMDE 434

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL---TGIREDMSLE--EVINYAS 439
            +  G ++   ++ G P++V VG K V         R     G +  + +E      +  
Sbjct: 435 RQTPGWKYNHWEMRGVPVRVEVGPKDVQSGTCVTARRDMGKEGKQMGVPMEAAAFTAHVQ 494

Query: 440 HRFSNNR 446
              +  R
Sbjct: 495 GLLAQAR 501


>gi|15920522|ref|NP_376191.1| histidyl-tRNA synthetase [Sulfolobus tokodaii str. 7]
 gi|32130136|sp|Q975U9|SYH_SULTO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|15621305|dbj|BAB65300.1| 426aa long hypothetical histidyl-tRNA synthetase [Sulfolobus
           tokodaii str. 7]
          Length = 426

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 65/410 (15%), Positives = 129/410 (31%), Gaps = 21/410 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
           +  V     +     G  E+  P ++   L+   G  +     M    D+  + +   P 
Sbjct: 21  IKVVENAFLKIVKLAGYQEVETPIVEDFQLFALKG-GEELRNTMYVFKDKAGREVALRPE 79

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP---RFGVMRSREFLMKDAYSFDLT 166
               +   + + ++        +Y   +   DE +    R       E L       DL 
Sbjct: 80  FTPSIVRFYLNSLQHLPKPIRLYYLGTVYRYDEPQFGRYREFRQAGIELLGSSNIYSDLE 139

Query: 167 PEGS-KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ----V 221
                   Y ++ +          +  I        I  +L   F+ L D G+      +
Sbjct: 140 ILQILIEIYRELNLINKIRLKINNISLIRKILNKLNISDNLQEHFLHLIDKGKIDEALSL 199

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN-------EKLFDSLPEN 274
             S ++ +      + +  DI S N I E  T  Y     + +       + + D+L  N
Sbjct: 200 LPSSEYTELITNILSVNNLDISSYNKIKEDLTEKYNLKDLIQDLDRIMLLKNILDNLGVN 259

Query: 275 KRVSARGIEVGHIFYFGTKYS-LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 G   G  +Y G  +  L  S +F  A G  +   +  YG      +   I    
Sbjct: 260 S-YIDLGFVRGLAYYTGLIFEVLHPSVSFSIAGGGRYDNLVELYGGPQTPAIGFAIGVER 318

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF- 392
               +  P++V   +  +  I   D+       +I  +L         +     I     
Sbjct: 319 TALVLEEPNTVKEKQNKIGVIVLSDEAIL-YAIRIVDKLRSNNYIATINLKSISISKLIP 377

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + A+  G+   + +G K   D  + +K+  T  +  +  E +++Y     
Sbjct: 378 SYAEE-GYSFLIFIGKKEYEDKTITLKNLSTKEQVTIKEENLLDYLKQII 426


>gi|71032677|ref|XP_765980.1| glycyl-tRNA synthetase [Theileria parva strain Muguga]
 gi|68352937|gb|EAN33697.1| glycyl-tRNA synthetase, putative [Theileria parva]
          Length = 874

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 1/124 (0%)

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           A RV         + K +    S+AP K S++ + +  +V      ++ ++L  +G    
Sbjct: 734 AYRVRPVDSNVPEERKYVSLHKSIAPTKCSILPLSSK-EVFEPLISRVQSQLRSLGISHK 792

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D  G  IG ++A  D +G P  V +  + V+D  V ++ R +  +  + L++V    S+
Sbjct: 793 VDKTGASIGKRYARTDEIGVPFCVTLDFQSVNDDTVTLRERDSMQQVRVKLDQVGQLLSN 852

Query: 441 RFSN 444
              +
Sbjct: 853 LLKD 856



 Score = 47.0 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 7/96 (7%)

Query: 25  LMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSA 77
           L+ R         I+  S G++ + P G      +  + RE        +E+S   +   
Sbjct: 185 LLRRRFFYANSFEIYGGSAGLFDFGPPGCALKSELERLWREHFIVFDEMLEVSCSCITPH 244

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
            +   SG  D +   M++     D         + +
Sbjct: 245 PVLKSSGHVDRFTDLMVKNLSNGDCYRADKYLQDLI 280


>gi|94985816|ref|YP_605180.1| glycyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
 gi|122986565|sp|Q1IXM3|SYG_DEIGD RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|94556097|gb|ABF46011.1| glycyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
          Length = 504

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 125/372 (33%), Gaps = 54/372 (14%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +   +  +AD +    +   T + + T+       + R LPF   QI   FR+E+ PR  
Sbjct: 170 FKTSIGPVADEDSFGYLRPETAQGIFTNFKNVVDSTSRRLPFGIAQIGKAFRNEITPRNF 229

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R RE    +   F  TP   +  +     + L  +   G+    ++            
Sbjct: 230 IFRVRELEQMEIEFFC-TPGTDEAWHQHWLEARLAWWEAQGIPREKIQI----------- 277

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                                  +P E+       + + +    T  Y     + N   F
Sbjct: 278 ---------------------LDVPKEDLAHYSKRTYDLMYNYPTLGYEEIEGIANRTDF 316

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     K  +  GI+      F +   L +         K     +     G  R + AV
Sbjct: 317 DLGSHTKAQAELGIQARVEENFDSVAKLTIP---HPETNKPVVPFVIEPSAGVDRAMLAV 373

Query: 329 IESSH---------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-D 378
           +  ++         +   +     +AP K+++I +  + +      + I A+L  +G   
Sbjct: 374 LAEAYTKETLENGSERIVLKLKPHLAPIKVAVIPLARNREEITSVAKAIKAKLQSLGLGR 433

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS-------KVEIKHRLTGIREDMSL 431
           V ++D G  IG  +   D +G P  V V  + V           V ++ R T  +E + +
Sbjct: 434 VLYEDSG-NIGKAYRRHDEVGTPYCVTVDFETVGKGEDPALTDTVTVRDRDTLGQERVRI 492

Query: 432 EEVINYASHRFS 443
            E+ N+   R  
Sbjct: 493 SELANWLQARLR 504


>gi|311278555|ref|YP_003940786.1| histidyl-tRNA synthetase [Enterobacter cloacae SCF1]
 gi|308747750|gb|ADO47502.1| histidyl-tRNA synthetase [Enterobacter cloacae SCF1]
          Length = 424

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/423 (13%), Positives = 118/423 (27%), Gaps = 27/423 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++E     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPGETALWQRIEGTLKEVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRHERPQKG---RYRQF 125

Query: 156 LMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                  F    P+            +  +     +        S     +     +   
Sbjct: 126 HQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVSLELNSIGSLEARANYREALVAYL 185

Query: 215 DTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF---- 268
           +  + ++   C +     P+   ++   D+ +L              S  H   L     
Sbjct: 186 EQFKDKLDEDCKRRMYTNPLRVLDSKNPDVQALLDNAPALGDYLDDDSREHFSGLCALLD 245

Query: 269 ---------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                      L        R +        G++ ++     + G   +       + G 
Sbjct: 246 AAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRAAPAVGF 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                   ++          +          +              E +  +L   G  +
Sbjct: 306 AMGLERLVLLVQ---AVNPEFKADPVVDIYLVAAGNDTQSAAMRLAEDVRDQLP--GVKL 360

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             +  G     QFA AD  G  + +++G   +++  V +K   +G +  ++ + V  +  
Sbjct: 361 MTNHGGGNFKKQFARADKWGARVALVLGESEIAERSVVVKDLRSGEQTTVAQDSVAAHLR 420

Query: 440 HRF 442
              
Sbjct: 421 TLL 423


>gi|306828547|ref|ZP_07461742.1| histidine--tRNA ligase [Streptococcus mitis ATCC 6249]
 gi|304429346|gb|EFM32431.1| histidine--tRNA ligase [Streptococcus mitis ATCC 6249]
          Length = 426

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 121/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+     + T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNNLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I    +       ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGEGANVKALQLVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SL+ +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLDAISQNFSEIFEK 423


>gi|313157062|gb|EFR56492.1| glycine--tRNA ligase [Alistipes sp. HGB5]
          Length = 514

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 88/258 (34%), Gaps = 20/258 (7%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       GE   +                F D        E+  A YA  
Sbjct: 259 FRMREFEQMEMQFFVRPGEEMKWWQAWKETRMAWHRALGFGDDRYRFHDHEKL-AHYANA 317

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSY 317
           +            E + + +R       F  G   K+S      F    G+ +   +   
Sbjct: 318 ATDIEYNFPFGFKEVEGIHSR-----TDFDLGNHQKFSGRKIQYFDPETGESYVPYVVET 372

Query: 318 GIGAMRVV---------AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            IG  R+             +E       +  P ++AP K++++ +   D    +  +KI
Sbjct: 373 SIGVDRMFLQVMSAAYTEEQLEGGDSRVVLRLPAALAPVKVAVLPLVKKD-GMPEVAQKI 431

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L K   +V +D+    +G ++   D +G P  V V  + + D+ V ++HR T  +E 
Sbjct: 432 VD-LLKYDYNVVYDEKD-SVGKRYRRQDAVGTPFCVTVDGQTLEDNTVTVRHRDTMQQER 489

Query: 429 MSLEEVINYASHRFSNNR 446
           ++++++        S  +
Sbjct: 490 VAIDKLPALVEEECSYRK 507


>gi|168491651|ref|ZP_02715794.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|183574087|gb|EDT94615.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
          Length = 429

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 119/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 IFEKQGVALPIENALDVYIAVLGDGANAKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V IK+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTIKNNQTREEVQVSLETISKNFSEIFEK 423


>gi|294892656|ref|XP_002774168.1| glycyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239879385|gb|EER05984.1| glycyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 674

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 98/298 (32%), Gaps = 24/298 (8%)

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS------ 224
           K   +   + + +              ++  +      E + +AD     +         
Sbjct: 360 KAGVDGSMLRFRQHLKSEMAHYACDCWDAEALLSYGWTEIVGIADRSAYDLTAHSKASKV 419

Query: 225 --KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK------LFDSLPENKR 276
             K    F  P      +  I+   +   +     A  +  NE         D+  E   
Sbjct: 420 DLKANYKFDEPRNMEFVECKINKGKLGPAFKKEAGAVIEALNELTDKQKLEMDAAIEENG 479

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-- 334
           V    I  G  +    +     + T K          +     G  R++  ++E +    
Sbjct: 480 VYELKICTGARYNITKEMVKVKTVT-KRVQEVPFIPSVIEPAFGVGRIIYTILEHTFRSR 538

Query: 335 -------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                     +  P  VAP K+S++ I ++    + A  KI   L + G     DD G+ 
Sbjct: 539 EMEDQELRCYLSLPPVVAPTKVSVLPISSNPTQFKPAMHKITDALKEHGISYKVDDSGQA 598

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           IG ++A  D +G P  + +  + ++D  V ++ R +  +  + + +V +      ++ 
Sbjct: 599 IGKRYARTDEIGIPFGITIDFQSLNDDTVTLRERDSMSQIRLPIADVADLVYKLCTDR 656



 Score = 50.9 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAI-EMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     N+ A+ R        + E+    L    +   SG  + +   M++
Sbjct: 88  AGLYDFGPPGCALKANLEALWRRHFINHDNMLEIQCTCLTPEVVLKTSGHVEKFTDLMVK 147

Query: 96  LADRNDKAMIYGPTHEE 112
                D+        EE
Sbjct: 148 NEKNPDEYYRADKLLEE 164


>gi|150016422|ref|YP_001308676.1| histidyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|149902887|gb|ABR33720.1| histidyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 417

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 63/397 (15%), Positives = 119/397 (29%), Gaps = 11/397 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              + +  R+     G  E+  P  +  +L++ S     D   KEM    D+ ++++   
Sbjct: 22  WHYIESAFRKVAKTYGIREIRTPMFEHTELFLRSVGDTTDIVQKEMYTFNDKGNRSITLK 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F  +       P   Y I   FR E   +    R R+F       F    
Sbjct: 82  PEGTASAVRAFVENRLFNEAQPTKLYYITPAFRYENVQKG---RLRQFHQCGLEVFGSNA 138

Query: 168 EGSK-HSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFIVLADTGETQVFCS 224
                        +   +  +    +I         P   +   +F+     G     C 
Sbjct: 139 ASMDAEVIAVAMDTLKELGLKSLSLNINNLGCPSCRPKYNEALKKFLADNYDGLCDT-CK 197

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GI 282
             F   P+   +        +                 H  K+ + L           GI
Sbjct: 198 DRFEKNPMRILDCKEKKCHEITKNAPIILDYVCEECSTHFNKVKEYLDILGLPYTIDPGI 257

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
             G  +Y  T + +  S       G+   +     G     V   +              
Sbjct: 258 VRGLDYYTKTIFEILTSDFTVCGGGRYDKLIEELGGPDMPAVGFGMGVERLIMTLEKENI 317

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
            +   K+  + I A  +       K+ + L  +G     + MG  + ++   A+ LG   
Sbjct: 318 EIPKEKLFDLYIGARGEAESKYAFKLASDLRALGVKCEINHMGRSVKAEMKYANKLGAAF 377

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             I+G   +++ KV +K    G   ++SLE+++  A 
Sbjct: 378 TTILGEDELTNRKVNLKRMSDGEIFEVSLEDLMEIAK 414


>gi|257466068|ref|ZP_05630379.1| histidyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917224|ref|ZP_07913464.1| histidyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691099|gb|EFS27934.1| histidyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 413

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 59/406 (14%), Positives = 123/406 (30%), Gaps = 32/406 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            + ++ I ++     G   +  P  +  DL+        D   KEM    DR D+++   
Sbjct: 21  YNYISEIAKQVFESYGCQFIKTPIFEETDLFKRGIGEATDVVEKEMYTFKDRGDRSITLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLT 166
           P +   +   +  +    +     FY     FR E        R REF         + +
Sbjct: 81  PENTASVVRSYLENAIYAKEDVSRFYYNGSMFRYERPQAG---RQREFNQIGVEILGEKS 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCS 224
           P          +    ++        I       S         E+       +    C 
Sbjct: 138 PILDAEIIAMGYKLLQKLGITDLEVRINCIGSNASRTEYRKKLLEYFTPM-KEDLCEDCK 196

Query: 225 KDFMDFPIPSENTDFDDIIS------LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                 P+   +   D          ++S+ E+  A Y A            + +   V 
Sbjct: 197 NRLERNPLRVLDCKVDHDKMDGAPSIIDSLFEEERAHYEAVKKYLTIFGVPFVEDPGLVR 256

Query: 279 ARGIEVGHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                   +F       G++ ++     +     +     + ++G  +      ++    
Sbjct: 257 GLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKQLGDKDIAAFGFASGVERIMMLL--- 313

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                       P K + + I    +   +   +I A L +    V  D   + + S   
Sbjct: 314 ---------EDYPKKATDVYIAWLGENTLEKAMEITALLRENNLKVAVDYNSKGMKSHMK 364

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            AD L     VI+G   ++ + V +K+  T  +E++S+E ++    
Sbjct: 365 KADKLNTKYCVILGEDELAKNVVVLKNFKTREQEEVSVENILMAIK 410


>gi|197122762|ref|YP_002134713.1| histidyl-tRNA synthetase [Anaeromyxobacter sp. K]
 gi|226737063|sp|B4UEL3|SYH_ANASK RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|196172611|gb|ACG73584.1| histidyl-tRNA synthetase [Anaeromyxobacter sp. K]
          Length = 414

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 67/413 (16%), Positives = 133/413 (32%), Gaps = 18/413 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP        + ++ RE     G  E+  P ++ A L+        D   KEM  
Sbjct: 8   GMNDVLPADVARWHEMESVAREVFALYGYREVRTPAVEHAALFARGVGEATDIVNKEMYV 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+ ++ +   P         F     ++   P  ++ +   FR E   +    R R+F
Sbjct: 68  FEDKGEELLALRPEGTAGTVRAFI-EHGAFVEGPQKWFYMGPMFRRERPQKG---RYRQF 123

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRI--FHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
                 +F +           +   Y            +    A+  P        ++V 
Sbjct: 124 HQIGCEAFGVAEPYLDAEQIALLADYFARLGVTAELKLNSVGDAQCRPAYLADLKAYLV- 182

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF---DS 270
           A+ G     C       P+   +   +    +     Q           H +++    D+
Sbjct: 183 ANQGALCADCKDRIERNPLRVLDCKVESCQPVLEQAPQLLERLCEPCRTHFDQVKAGLDA 242

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSA----TFKGADGKDHYVQMGSYGIGAMRVVA 326
           L    RV  R +  G  +Y  T Y     A    +     G+   +     G     +  
Sbjct: 243 LGVAYRVEPR-LVRGLDYYVRTAYEFTSDALGSQSAVAGGGRYDRLVETLGGPPTPGIGF 301

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A+ E            ++   + ++  + A      +   ++ A L + G     D  G 
Sbjct: 302 ALGEERLSMILEKVGRAMPERRPAVFFVSADATGALE-ALRLAAGLRRAGIACELDPRGG 360

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++ +QF  A+ +G    V++G   V+  + ++K   T     ++L E+    S
Sbjct: 361 KLKAQFKQAERVGARWAVVLGGNEVATGQAKLKDLQTREETPVALSELAARVS 413


>gi|227501341|ref|ZP_03931390.1| histidine--tRNA ligase [Anaerococcus tetradius ATCC 35098]
 gi|227216475|gb|EEI81884.1| histidine--tRNA ligase [Anaerococcus tetradius ATCC 35098]
          Length = 428

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 59/425 (13%), Positives = 123/425 (28%), Gaps = 33/425 (7%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G+   LP  Q   D +  II E   +   + +  P ++  ++    G  ++  +     
Sbjct: 10  AGVMELLPKEQLVFDKIKNIIEESYKKYQFMPIDTPVIEKNEILFAKGGGETEKQIYEIA 69

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           ++  D ++ +  T              +    PF  Y I   +R E   +    R REF 
Sbjct: 70  SESKDMSLRFDLTVPLARYVAEHFQDLN---FPFKRYHIAKVYRGERNQKG---RYREFY 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRI---------------------FHRLGLKSIPM 195
             D            +      V Y                        F  LG++    
Sbjct: 124 QCDIDIIGHNSLSIYNDALLPRVIYDIFDKLNFSDLTFKINNRKLLNGFFKSLGIEDSTD 183

Query: 196 RAES----GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS-ENTDFDDIISLNSIVE 250
              +      IG D ++E +V     E          +            D       +E
Sbjct: 184 VLRTIDKKDKIGLDNTYEELVKLTNEEKAHTIINFINNTASNQTLLEKLSDFSDNELFLE 243

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                      + +  + D   +      RG++      + T  +         + G+  
Sbjct: 244 GLDELSKVYKYMIDLDIPDKNIKIDLAITRGLDYYTSTVYETFINGYEKIGSVCSGGRYE 303

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIY 369
            +           V  ++  +    +           +    + I   D+   +   ++ 
Sbjct: 304 DLASNFSKQKLPGVGMSIGLTRLFYQFQELGLIDDQIESLTDSLIIPMDEEANEYGIEVL 363

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L   G  V       +   +   AD LG    +I+G+  +++ +V IK+  TG +   
Sbjct: 364 KKLRSRGEAVDIYLEDGKFKKKMTYADKLGVKEVIILGADELANKEVSIKNMQTGEQIKK 423

Query: 430 SLEEV 434
           S  ++
Sbjct: 424 SFADL 428


>gi|110669558|ref|YP_659369.1| glycyl-tRNA synthetase [Haloquadratum walsbyi DSM 16790]
 gi|109627305|emb|CAJ53795.1| glycine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 602

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 81/304 (26%), Gaps = 16/304 (5%)

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G          +    D      +   +     Y         +      E         
Sbjct: 279 GYFIGIAQEWYETIGVDTDRFRFRQHLSGERAHYATDCWDAESEVDGDWIEIAGFAYRGE 338

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           ++    A+ G+ +    +++ +           D+  L               +   E+ 
Sbjct: 339 YDLSKHAEYGDDEFSIFQEYEESKTVERAVVDPDMSVLGPKFGSQAGEIKTALETLAERN 398

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D+  E     +   E+  +               K  +G+     +     G  R V  
Sbjct: 399 PDAFSEETVDVSVDGEIMTV----DVEETNFHIESKTVNGEHITPHVIEPSFGIDRTVYT 454

Query: 328 VIESSHDGKGIIWPDSVA--------PFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           ++   +    +               P  + +  + ++ +   +  + I + L   G  V
Sbjct: 455 LLAHGYREDTVDNETRTYLSLSTKVAPTDVGVFPLISNVEQLVEQAKDIVSELRAAGLSV 514

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD---SKVEIKHRLTGIREDMSLEEVIN 436
             DD G  IG ++   D +G P  + V    +       V I+ R TG +    +  V  
Sbjct: 515 VADDSG-SIGRRYRRQDEIGTPFCITVDRDGIEGTDPDTVTIRQRDTGRQVRAPIAVVTE 573

Query: 437 YASH 440
               
Sbjct: 574 LIQS 577



 Score = 60.1 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 8/95 (8%)

Query: 12 QENPRDAEIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQN-RT 64
          +E+  + E  + +L  R G     +       G Y++ P G     N+ A  RE    R 
Sbjct: 4  KEDQTEGERLA-ELAKRRGFFFGSNGAYGGVAGFYTFGPQGAALKSNIEAAWRERFTVRE 62

Query: 65 GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
          G  E+  PT+    ++  SG  D +   ++   D 
Sbjct: 63 GNYEIEAPTIMPEPVFEASGHLDGFDDMLVECPDC 97


>gi|14591389|ref|NP_143467.1| glycyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|11387128|sp|O59235|SYG_PYRHO RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|3258043|dbj|BAA30726.1| 570aa long hypothetical glycyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 570

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 70/428 (16%), Positives = 137/428 (32%), Gaps = 73/428 (17%)

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           Y +   E      ++ KA +   T + +  +  R +  +   LPF  +QI   +R+E+ P
Sbjct: 143 YFNLMFETYIGPYKDKKAYLRPETAQGIFVNFKRLNAFARNKLPFGVFQIGKAYRNEISP 202

Query: 146 RFGVMRSREFLMKDAYSF---------DLTPEGSKH------------------------ 172
           R G++R REF   +A  F                +                         
Sbjct: 203 RQGMIRLREFTQAEAEIFFNPNETEHPHFNEVKHEKLKLYPIENQLKELGEVEVTAEEAV 262

Query: 173 ---SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF-IVLADTGETQVFCSKDFM 228
                   F +Y  +  +  L  I +  +       L  E     ADT + +V+  +   
Sbjct: 263 KRGYVMNSFFAYYMVMIKKILLDIGIPEDKIRFRQQLPEERAHYSADTWDAEVYSERFGW 322

Query: 229 -DFPIPSENTDFDDIISLNSIVEQWT--------------------APYAATSDVHNEKL 267
            +    +  TD+D    +       T                               +K+
Sbjct: 323 VECVGLAYRTDYDLSRHMKMSGADLTVMIHYDKPKVVKRIQVSLNMKKVGPKLKADAKKI 382

Query: 268 FDSLPENKRVSARGI-----EVGHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGI 319
            + +    +     +     E G +   G + S       +  +   G+     +     
Sbjct: 383 NEIIKSMDQKELEKLVKDLNEKGKVTIEGYELSKEDFIVKEVEEKITGEKIVPHVLEPSF 442

Query: 320 GAMRVVAAVIESSHD-----GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G  R    ++E+S          +     +AP +++++ + A  +       +IY  L K
Sbjct: 443 GIDRPFYLLLENSLTVDEDGRIYLKIKKDMAPIEVAVLPLVAK-EPLTTIAYEIYRTLQK 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V +D+    IG ++   D +G P  V V ++   D  V I+ R T  +  + +EE+
Sbjct: 502 EGFIVVYDEKD-SIGKRYMRYDEIGTPYCVTVDNQTPEDGTVTIRDRDTREQIRVKIEEL 560

Query: 435 INYASHRF 442
                   
Sbjct: 561 PRKLKELI 568



 Score = 66.7 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/393 (12%), Positives = 110/393 (27%), Gaps = 28/393 (7%)

Query: 23  HKLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             LM R G       I+  S+G Y + PLG      +   IRE   R G  E+  P +  
Sbjct: 12  QDLMRRRGFAWGSFEIYGGSRGFYDYGPLGATIKRKIERKIREAFIREGFFEIETPDITP 71

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +++ SG  + +   ++       +        E +  D+     +    +        
Sbjct: 72  EQVFIASGHVEKFVDPVVECKKCGMRFRADHLIEEFLGIDVEGKSAEEMSRIIREHGLKC 131

Query: 137 LKFRDELRPRFGVMRSREFLM---KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
            +   EL   F      E  +   KD  ++           N   ++             
Sbjct: 132 PECGGELSDVFYFNLMFETYIGPYKDKKAYLRPETAQGIFVNFKRLNAFARNKLPFGVFQ 191

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-----------FDDI 242
             +A    I        +      E ++F + +  + P  +E                ++
Sbjct: 192 IGKAYRNEISPRQGMIRLREFTQAEAEIFFNPNETEHPHFNEVKHEKLKLYPIENQLKEL 251

Query: 243 ISLNSIVEQ-------WTAPYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKY 294
             +    E+         + +A    +  + L D  +PE+K    + +      Y    +
Sbjct: 252 GEVEVTAEEAVKRGYVMNSFFAYYMVMIKKILLDIGIPEDKIRFRQQLPEERAHYSADTW 311

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
              + +   G            Y +     ++    +                 +++  +
Sbjct: 312 DAEVYSERFGWVECVGLAYRTDYDLSRHMKMSGADLTVMIHYDKPKVVKRIQVSLNMKKV 371

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
               +       +I   + +   +    D+ E+
Sbjct: 372 GPKLKADAKKINEIIKSMDQKELEKLVKDLNEK 404


>gi|212697522|ref|ZP_03305650.1| hypothetical protein ANHYDRO_02095 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675521|gb|EEB35128.1| hypothetical protein ANHYDRO_02095 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 432

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 56/431 (12%), Positives = 121/431 (28%), Gaps = 37/431 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G+   LP  Q   D++  II E       + +  P ++  D+    G  ++  +     
Sbjct: 10  AGVMELLPDDQLVFDHIKQIIEETFLSYQFLPIDTPAIEKNDILFAKGGGETEKQIFGIY 69

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           + + D ++ +  T          S   S  N PF  YQI   +R E   +    R +EF 
Sbjct: 70  SSKKDMSLRFDLTVPLARY---VSEHFSDLNFPFKRYQIGKVYRGERNQKG---RYKEFY 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             D            +      V Y                    +  +   E I ++D 
Sbjct: 124 QCDIDIIGNDSLSIHNDALLPKVIYDIFQKLDFKGIKFHINNRKLL--NGFFESIEISDK 181

Query: 217 GE----------------TQVFCSKDFMDFPIPSENTDFDDIISLN--------SIVEQW 252
            E                 ++       D  +       +   +           + + +
Sbjct: 182 EEVLRTIDKKAKIGDEKTKELLTELCGEDKALKLMELINNKRDNKELLKYLESLDLNDNY 241

Query: 253 TAPYAATSDVHNEKLFDSLPEN----KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                   +V++  +   + +          RG++      + T      S     + G+
Sbjct: 242 KLGLRELKEVYDYMVKFGIDDESIMIDLSITRGLDYYTSTVYETFLDGYESIGSVCSGGR 301

Query: 309 DHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
              +             ++  +         +          +   I   D+        
Sbjct: 302 YENLAGNFSKQNLPGVGLSIGLTRLFYQLQELGLLEKYREDFTDCLIIPMDEKLNFYAID 361

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I   L   G  V       +   +   AD +G    +I+G +   +  V +K+   G + 
Sbjct: 362 IGNDLKNKGYKVDIYLEDGKFKKKINYADKIGVKKVIIIGQEEYENKMVSVKNMEDGNQV 421

Query: 428 DMSLEEVINYA 438
            + +E++ +Y 
Sbjct: 422 SVKIEDIGDYL 432


>gi|288906393|ref|YP_003431615.1| histidyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|306832440|ref|ZP_07465593.1| histidine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325979407|ref|YP_004289123.1| HTH-type transcriptional regulator [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288733119|emb|CBI14700.1| histidyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|304425480|gb|EFM28599.1| histidine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325179335|emb|CBZ49379.1| HTH-type transcriptional regulator [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 425

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 61/409 (14%), Positives = 110/409 (26%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V A+ RE   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEAVARETFKKYNYSEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   F  +         P   Y I   FR E        R REF       F  
Sbjct: 80  PEGTAPVVRSFVENKLFAPEVQKPVKMYYIGSMFRYERPQAG---RLREFHQVGVECFGS 136

Query: 165 LTPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             P     +                    + LG  +         I         +  D+
Sbjct: 137 ANPATDVETIAMAYQLFQTLGIKDVTLHLNTLGSAASRAAYRQALIDYLTPMREQLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+   ++    A + A   +        + +  
Sbjct: 197 QRRLDENPLRVLDSKEKEDKIAVENAPSILDYLDDESQAHFDAVRSMLETLNIPYVIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T            A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITTVDKSELT--ICAGGRYDSLVEYFDGPETPGFGFGLGLERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   K   + I    Q       ++   +   G     D +G +I +QF  A
Sbjct: 315 ILEKQGIELPVEKEMDVYIAVLGQGANLKALELVQAIRNQGFSAERDYLGRKIKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D       + +G   +   +V +K+  T     +S +E+ N  +   + 
Sbjct: 375 DAFNAKTIITLGESEIEAGQVAVKNNKTREEVTVSFDEITNNFAEVLNK 423


>gi|254383750|ref|ZP_04999099.1| histidyl-tRNA synthetase [Streptomyces sp. Mg1]
 gi|194342644|gb|EDX23610.1| histidyl-tRNA synthetase [Streptomyces sp. Mg1]
          Length = 433

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 62/431 (14%), Positives = 135/431 (31%), Gaps = 38/431 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   +LP        V   + E   R G      P L+SA+++  +SG+ +   +++  L
Sbjct: 12  GTRDFLPAEMSVRQQVFGHLYETVERYGYGRYDGPILESAEIYEAKSGQ-EIANQQLYSL 70

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            DR  + +   P     +  +  ++  S    P  +Y      R E   R    R+RE  
Sbjct: 71  TDRGGRRIALRPEMTPSVARMIAANAGS-LQFPVRWYSHVNCHRYERPQRG---RTREHW 126

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +   F       +     +    +          +    +   I   +  + + + ++
Sbjct: 127 QLNVDIFGSDSPNCEIEIFDLIHDVMGSLGATRDMWVLRVGD-RAILNSILRDVVKVPES 185

Query: 217 GETQVFCSKDFMD-FPIPSENTDFDDIISLNSIVE--------------------QWTAP 255
              Q     D  +  P      D  +      + +                    +  +P
Sbjct: 186 AHQQTMALIDRWEKVPAEKLREDAAEFGVDGRMFDLLESTLRSGAEVLPDLPDEVREASP 245

Query: 256 YA--ATSDVHNEKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A    S+  +  +FD  +    +     +            SL     +    G     
Sbjct: 246 LAQVMKSEAKDLFVFDPFIVRGLQYYTSTVFEVFDLSPENNRSLFGGGRYGDLAGLFTNQ 305

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           ++   G G        +    D  G+  P++     +++I +   D     A  ++   L
Sbjct: 306 RIPGIGFGMG---DVTLHDFLDTHGL-LPEAKNEVDVAVIPV---DDELIPASREVARTL 358

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            + G          ++G + + AD  G    VIVG        V ++      + +++L 
Sbjct: 359 RQAGIRTSTTLEPRKLGKELSRADRSGAGFAVIVGRDEWQRQAVVLRDLKGAAQHEIALA 418

Query: 433 EVINYASHRFS 443
           +V+ + + R +
Sbjct: 419 DVVAHLTERLA 429


>gi|325689257|gb|EGD31263.1| histidine--tRNA ligase [Streptococcus sanguinis SK115]
          Length = 426

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 59/402 (14%), Positives = 116/402 (28%), Gaps = 25/402 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
           +   +     +M     + F  +G+ ++ +   S       +                  
Sbjct: 137 SNPATD---VEMIAMAAQFFKDIGITNVSLELNSLGNPESRAAYRQALIDYLTPLKASLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D   P +    +   S+   +++ ++ Y A      E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEPEDKVAVEGAPSILDYLDEESSAYFAAVRSMLETLQIPYVI 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               V         IF F T+ +         A G+   +     G     V   +    
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLT--ICAGGRYDGLVAYFGGPETPGVGFGMGLER 311

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      +       + +        D   ++   L   G     D +  ++ +QF
Sbjct: 312 LLLVLDKQGVELPIETALDVYVAVLGAGANDRALELVQALRAQGFAAERDYLDRKLKAQF 371

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             AD       + +G   V   +V +K+        +SL+++
Sbjct: 372 KSADSFKAKTLITLGESEVESGQVTVKNNYNREEITVSLDQI 413


>gi|322376011|ref|ZP_08050521.1| histidine--tRNA ligase [Streptococcus sp. C300]
 gi|321278961|gb|EFX56004.1| histidine--tRNA ligase [Streptococcus sp. C300]
          Length = 426

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 120/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I    +       ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGEGANVKALELVQTLRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SL+ +    S  F  
Sbjct: 375 DIFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLDAISQNFSEIFEK 423


>gi|322392494|ref|ZP_08065954.1| histidine--tRNA ligase [Streptococcus peroris ATCC 700780]
 gi|321144486|gb|EFX39887.1| histidine--tRNA ligase [Streptococcus peroris ATCC 700780]
          Length = 426

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 121/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKAIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + ++ 
Sbjct: 197 QRRLEENPLRVLDSKEKEDKAAVENAPSILDYLDEESQAHFDAVRQMLENLGVDYIIDSN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNELTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +       + I    +       ++   L + G     D +  ++ +QF  A
Sbjct: 315 VLEKQGVVLPIENALDVYIAVLGEGANIKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +I   S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLEAIIQDFSEVFEK 423


>gi|307354508|ref|YP_003895559.1| histidyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
 gi|307157741|gb|ADN37121.1| histidyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
          Length = 405

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 57/423 (13%), Positives = 112/423 (26%), Gaps = 49/423 (11%)

Query: 44  PLGQKALDNVNAIIREEQNR--------------TGAIEMSVPTLQSADLWV-ESGRYDS 88
           P G +        + EE  +               G  E+  PT ++ +L+  +SG  + 
Sbjct: 5   PRGTR------DFLPEEMEQRREIEMRMRRVAGLFGYHEVLTPTFENQELYTIKSG--EG 56

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
              EM    D+  + +   P     +  ++ +  K     P  +  +   +R E   +  
Sbjct: 57  IIGEMYTFEDKGGRKLALRPEGTAAILRMYVNEAK-VLPKPIRWCYLLDCYRYERPQKG- 114

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+F    +                +    LR         +   A    I  DL  
Sbjct: 115 --RYRQFWQFGSELIGADTAAGDAEIILLADGLLRAAGVRFSLQVGHLAPMKHILLDLGE 172

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E     D         K   D          +D        +        T D   E   
Sbjct: 173 E-----DKKRVMALLDKRSFDE----LEACLNDTGKPELYDKLTALIECTTIDEAKEVCG 223

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGIGAMRVV 325
           D     +     GI       +     +     +       G    +   +  IG     
Sbjct: 224 DFPGMERMEEMLGILDSQKLEYSLNLGIVRGLDYYTGMVFEGFAENLGAENQIIGGGSYR 283

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---------CEKIYARLSKVG 376
            A +    D     +        +S   ++                    ++   L + G
Sbjct: 284 LAHLFGGEDTPSCGFGIGFDRVMVSRGEVELKRDPLVAILYTQEGQKRAFEVAGMLRREG 343

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                + +   +G+Q   A        V++G   V    V +K+  +G + +  L+++  
Sbjct: 344 IRTEINLLDRGVGAQMKHASRT-AQYAVLIGKNEVESGTVTLKNLASGDQVECKLDDLPG 402

Query: 437 YAS 439
              
Sbjct: 403 EVR 405


>gi|332975402|gb|EGK12296.1| histidine--tRNA ligase [Desmospora sp. 8437]
          Length = 398

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/403 (13%), Positives = 121/403 (30%), Gaps = 27/403 (6%)

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHE 111
               RE        E+  P  +  +L+        D   KEM    DR  +++   P   
Sbjct: 1   EEKARELCRLYHFSEIRTPLFEQTELFRRGVGETTDIVEKEMYTFEDRGGRSLTLRPEGT 60

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
             +   F  +       P   Y +   FR E        +  +F ++   + +   +   
Sbjct: 61  APVVRSFVENKMYAGPQPTKLYYMGPMFRYERPQAGRQRQFHQFGVEVFGTREPEVDAEI 120

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                 F + + +       +        P+  +   +F+      E    C       P
Sbjct: 121 IDLGYRFYTAVGLRKVRVELNSVGCPRCRPVHREALVKFLTPH-REELCKDCQSRLERNP 179

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSARGIEV- 284
           +   +   +    L     +           H + + ++L       E      RG++  
Sbjct: 180 MRVLDCKNETCSRLTEDAPKMLQFLCDDCAPHFDTVKENLDLLEVPYEVNPRLVRGLDYY 239

Query: 285 -GHIFYFGTKYSLPMSAT-------FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
               F +  + +   S              G    +    +G+G  RV+ A+        
Sbjct: 240 TQTAFEYLLEEAEGGSLGGGGRYNGLVEEVGGPADMPGIGFGLGLERVILAL-------- 291

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                 +    +     +       +     +  +L + G     D +  ++ +Q   AD
Sbjct: 292 -KQQEVNPPIRRGVDCFLVTLGAATKKRGVSLLKQLREAGLSAERDYLDRKLKAQLKAAD 350

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             G     I+G   + + ++ +K+  TG +E + L+++ +Y  
Sbjct: 351 RSGAAYVAILGEDELEEDRIVVKNLSTGEQETIQLDQLTDYIR 393


>gi|262066990|ref|ZP_06026602.1| histidine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
 gi|291379296|gb|EFE86814.1| histidine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
          Length = 413

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 60/405 (14%), Positives = 119/405 (29%), Gaps = 33/405 (8%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + +E     G      P  +  DL+        D   KEM    D+ D+++   P +
Sbjct: 24  ISNVTQEMFENYGYKFAKTPIFEETDLFKRGIGEATDVVEKEMYTFKDKGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEG 169
              M   +  +    +     FY     FR E        R REF       F + +P  
Sbjct: 84  TASMVRCYLENSIYAKEDVSRFYYNGSMFRYERPQAG---RQREFNQIGVEVFGEKSPIL 140

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                   +    ++        I       S  I  +   E    +   +    C    
Sbjct: 141 DAEVIAMGYNFLTKLGITDLEVKINSVGSKGSRTIYREKLVE-HFQSHLDDMCEDCKDRI 199

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENKRVSA 279
              P+   +   D                      H E++   L         +   V  
Sbjct: 200 NRNPLRLLDCKVDGDKDFYKSAPSIIDYLFEDERKHYEEVKKYLTIFGVKFTEDPTLVRG 259

Query: 280 RGIEVGHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                  +F       G++ ++     +     +     + ++G  A      ++   + 
Sbjct: 260 LDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAFGFAAGVERVMMLIGDN- 318

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                      P  +  + I    +   +   KI   L K    V+ D   + + S    
Sbjct: 319 ----------YPKDVPDVYIAWLGENTIETAMKIADSLRKENVKVYVDYSSKGMKSHMKK 368

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           AD L     +I+G   ++   V +K   T  ++++ +EE+IN+  
Sbjct: 369 ADKLETRYCIILGEDELNKGIVLLKDFSTREQKEVKIEEIINHIK 413


>gi|205353621|ref|YP_002227422.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|229558728|sp|B5RCZ1|SYH_SALG2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|205273402|emb|CAR38377.1| Histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628721|gb|EGE35064.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 424

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/432 (12%), Positives = 115/432 (26%), Gaps = 45/432 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMKDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + +            + +G            +     H+
Sbjct: 130 AEVFGLQGPDIDAELIMLTARWWRALGISEHVSLELNSIGSLEARANYRDALVAFLEQHQ 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D  +L   ++  +   +A    + +    
Sbjct: 190 ETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHFAGLCKLLDAAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G++ ++     + G   +       + G     
Sbjct: 250 AYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++                   +  I + A     + A   +  RL           
Sbjct: 310 ERLVLLV-------QAVNPEFIASPVVDIYLVAAGAQTQSAAMTLAERL----------- 351

Query: 384 MGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             E  G +             FA AD     + +++G   V+D  V +K   +G +  ++
Sbjct: 352 RDEMPGVKLMTNHGGGNFKKQFARADKWDARIALVLGESEVADGTVVVKDLRSGEQTAVA 411

Query: 431 LEEVINYASHRF 442
            + V  +     
Sbjct: 412 QDSVAAHLRTLL 423


>gi|168181745|ref|ZP_02616409.1| histidine--tRNA ligase [Clostridium botulinum Bf]
 gi|237796511|ref|YP_002864063.1| histidyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657]
 gi|259511940|sp|C3KTB7|SYH_CLOB6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|182675096|gb|EDT87057.1| histidine--tRNA ligase [Clostridium botulinum Bf]
 gi|229261383|gb|ACQ52416.1| histidine--tRNA ligase [Clostridium botulinum Ba4 str. 657]
          Length = 415

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/406 (13%), Positives = 110/406 (27%), Gaps = 29/406 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    R      G  E+  P  +  +L+        D   KEM    D+  +++   
Sbjct: 20  WQYLENKFRNIAADFGCREIRTPVFEYTELFQRGVGETTDVVQKEMYTFEDKAGRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F          P   Y      R E   +    R R+        F    
Sbjct: 80  PEGTSPAVRAFVEGRLFNETQPTKMYYFTPVMRYENVQKG---RLRQHHQFGIEIFGAKE 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                    + V   +     G++         P      +E +    +      CS   
Sbjct: 137 ASVDAEVISIPVRIYKELGVEGVELNINSIGC-PKCRKTYNEALKKYLSKNYDKLCSTCK 195

Query: 228 MDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEKLFDSLP------ENKRVS 278
             F           + +   IV+               H E L + L       +     
Sbjct: 196 TRFDKNPLRILDCKVDTCKEIVKDAPIILDYICGECKEHFESLKNYLDVLNINYKIDPFI 255

Query: 279 ARGIEV--GHIFYFGTKYSLPM---SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            RG++     +F F T            +   +     +    +G+G  R++  +     
Sbjct: 256 VRGLDYYSKTVFEFITDDITICAGGRYDYLIEEIGGPSMPAVGFGMGMERLLLTL----- 310

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                     +       + +       +    K+   L         D MG+ + +Q  
Sbjct: 311 ----QEKAIEIPEEAYVDLYLGNMGDKAKLEVLKLAKELRDRHIKCEIDHMGKSVKAQMK 366

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            A+ +G    +++G + ++  K  IK    G + ++ ++++     
Sbjct: 367 YANRIGAKYSMVLGEEELNTGKATIKKMEDGQQIEVDIKDIDTLIK 412


>gi|258404151|ref|YP_003196893.1| histidyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
 gi|257796378|gb|ACV67315.1| histidyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
          Length = 419

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 61/405 (15%), Positives = 115/405 (28%), Gaps = 13/405 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G     P        +    RE  +R G  E+ VP L+  +L+  S     D   KEM  
Sbjct: 9   GFNDLFPPVSAIYSRMEQTAREVFSRYGYYEIRVPLLEKTELFARSIGDETDVVQKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  +++   P     +   +  + +         +     FR E   +    R R+F
Sbjct: 69  FPDRKGRSLTLRPEATASVVRAYIENKRYASESVSRMFTFGPMFRYERPQKG---RQRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE----FI 211
              +          S      M   YL+     GL                 HE    ++
Sbjct: 126 HQVNCELLGAEAPQSDAELILMLWEYLQALGLDGLHLDLNSLGCRE-CRPAYHETLGSYL 184

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              D  E    C +     P+   +   +   S+     +      +    H   +   L
Sbjct: 185 AGVDADELCDDCRRRKTTNPLRVLDCKVEGCRSVMQQAPRLADHLCSGCQSHFASVRTIL 244

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD---HYVQMGSYGIGAMRVVAAV 328
                       +     +  + +  + A   GA                +G   +    
Sbjct: 245 DRAGIPYTINPRLVRGLDYYQRTTFEVVAENIGAQTAVAGGGRYDGLVSDLGGPALPGTG 304

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                +   ++  +   P       +   D   RD       +L K G         +  
Sbjct: 305 FACGMERLALLLQEQEQPGTPVDFFLAVLDDEARDEAILQAQQLRKQGLAGEVGYEAKSP 364

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            S    A+  G    +++G + + +    +K+  +G +E +S EE
Sbjct: 365 KSHLRHANKAGAAYCLLLGGQELQEKAFVVKNMQSGAQETVSWEE 409


>gi|307705779|ref|ZP_07642624.1| histidyl-tRNA synthetase [Streptococcus mitis SK597]
 gi|307620697|gb|EFN99788.1| histidyl-tRNA synthetase [Streptococcus mitis SK597]
          Length = 426

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 120/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I    +       ++   L + G     D +  ++ +QF  A
Sbjct: 315 VLEKQGVALPIENALDVYIAVLGEGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLEAISQNFSEIFEK 423


>gi|78183804|ref|YP_376238.1| histidyl-tRNA synthetase [Synechococcus sp. CC9902]
 gi|123743570|sp|Q3B0D3|SYH_SYNS9 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|78168098|gb|ABB25195.1| histidyl-tRNA synthetase [Synechococcus sp. CC9902]
          Length = 430

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 61/404 (15%), Positives = 111/404 (27%), Gaps = 30/404 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKE 92
           G+   LP   +    V ++ R    R+G  E+  P ++  DL+       +   D  GKE
Sbjct: 9   GMVDLLPQALQRWQAVESVARTHFQRSGFGEIRTPVMEPTDLFCRGIGEAT---DVVGKE 65

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    DR D++    P     +      H       P   +     FR E        R 
Sbjct: 66  MYTFNDRGDRSCTLRPEGTASVVRAALQHGL-LSQGPQKLWYAGPMFRYERPQAG---RQ 121

Query: 153 REFLMKDAYSFDL-TPEGSKHSYNKMFVSY--------------LRIFHRLGLKSIPMRA 197
           R+F           +           +                 L            + A
Sbjct: 122 RQFHQIGVEWLGAASARADVEVIALAWDLLASLGVGGLELELNSLGSTDDRCAYRTALVA 181

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                   L  +     +T   ++  SK+     +        + ++  S          
Sbjct: 182 WLEQRSNLLDEDSRARLNTNPLRILDSKNKATQALLDGAPTLANSLAPESRERFEVVQQG 241

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             S     +L   L                   G + ++     + G  G+       + 
Sbjct: 242 LASLGIPFRLSPRLVRGLDYYCHTAFEITSDQLGAQATVCGGGRYNGLIGQLGGPDTPAV 301

Query: 318 GI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           G   G  R++  V  +++           A    +   +    +    A   +   L   
Sbjct: 302 GWALGMERLLLVVEAAANADPDGDSARLTAVVPPNAYLVNRG-EQAEKAALILARSLRCA 360

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           G  +  D+ G     QF  AD  G    +++G + V   +V IK
Sbjct: 361 GLVIELDNSGASFSKQFKRADRCGARWALVLGDEEVEKGEVRIK 404


>gi|94676769|ref|YP_588488.1| histidyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219919|gb|ABF14078.1| histidyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 430

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 60/437 (13%), Positives = 129/437 (29%), Gaps = 29/437 (6%)

Query: 31  MIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY- 86
           M+ +     G+  +LP     L  +  ++++     G  E+ +P ++   L+  + G   
Sbjct: 1   MVKRIQSIRGMKDYLPKEMVFLQYLENLLKQVLVSYGYSEIRLPIVEQTLLFKRAIGEIT 60

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D   KEM    D N   +   P            H   ++ L   ++ I   FR E   +
Sbjct: 61  DVVEKEMYSFEDLNGDHLTLRPEGTAGCVRAGIEHSLFHQKLEQRWWYIGPMFRHERPQK 120

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNK----MFVSYLRIFHRLGLKSIPMRAESGPI 202
               R R+F    A  F                  +       +     +     ++   
Sbjct: 121 G---RYRQFYQLGAEVFGQHGPDIDAELIMLTARWWKVLGISEYVTLELNSIGSVDTRNR 177

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                  F+V  +     ++    + + P+   +T    I  L +            +  
Sbjct: 178 YCKALVTFLVQHERYLNNIYRRSIYTN-PMRILDTKNIQIQELLNDAPVIAEYLDDNAHK 236

Query: 263 H-------------NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           H             N K+   L          +      + G++ ++     +     + 
Sbjct: 237 HFSSICKLLDLTGINYKINTRLVRGLDYYNYTVFEWTTKHLGSQGTICAGGRYDLLVEQL 296

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                 + G         ++         +    +  +   +    A         EKI+
Sbjct: 297 GGKATPAIGAAIGLDRLVLLVQRLKPSLSLITLPIDIY--IVAVGDATQSRAMLLAEKIH 354

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             +  +     +   G     QF+ A+     L +I+G   +   +V IK   TG ++ +
Sbjct: 355 DAIPSLRIVTNY--GGGNFKKQFSRANKYSASLTLIIGENEIVTQQVTIKDLSTGKQKTL 412

Query: 430 SLEEVINYASHRFSNNR 446
           +  E+I Y    F   +
Sbjct: 413 AQNEIIAYLYSFFFKKK 429


>gi|150400469|ref|YP_001324235.1| histidyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
 gi|166228578|sp|A6UT01|SYH_META3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|150013172|gb|ABR55623.1| histidyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
          Length = 418

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 61/413 (14%), Positives = 126/413 (30%), Gaps = 16/413 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P   K    +   ++         E++ PT +  +L   ++G  +   K++   
Sbjct: 7   GTRDFAPSEMKKRKIIENKLKSVFMAYNFNEINTPTFEYFELLSKKTG--EDIRKQLFVF 64

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP---RFGVMRSR 153
            D  ++ M   P     +   + + +K+       FY       ++ +    R       
Sbjct: 65  KDHGNREMGLRPEITSSVVRFYINELKNLPKPQKLFYFANCFRYEQPQAGRYREFWQMGC 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVS-YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           E L       D                 Y      LG+              +L    ++
Sbjct: 125 ELLGSKNPIADAEVINLAMDGLNKINMDYEIHIGHLGVLKGVFEEFGLTEDEELKIRRLI 184

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---------PYAATSDVH 263
             +  E    C  +  +            +++    VE+            P +  +  +
Sbjct: 185 DKEDYENLEKCLIELEENKNIIIKDIIFSVLNSKGTVEEVIGNLKEILKNYPKSIEALNN 244

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
            E++ + +  N  +   GI  G  +Y G  + +                           
Sbjct: 245 LEEIMEFVKRNNYIINLGIARGLDYYTGMVFEVYGKKEGARQVCGGGRYDNLIELFEGAP 304

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
             A       D   +   D     K  LI     D+     C  I  +L ++   V  D 
Sbjct: 305 TPAVGFAYGFDRIMLNIDDFEVEDKRILIVPIKKDKKLLKECLIIADKLREMEKIVEVDL 364

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           M  ++      A+ +G    +++G K +++ K+ IK   TG ++ + LEE+ N
Sbjct: 365 MNRKLNKALNYANTVGISKVIMIGEKELNERKISIKDMETGEQKLIDLEELSN 417


>gi|52548690|gb|AAU82539.1| glycyl-tRNA synthetase [uncultured archaeon GZfos18C8]
          Length = 593

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 64/417 (15%), Positives = 125/417 (29%), Gaps = 79/417 (18%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  D           LPF   QI   +R+E+ PR GV+R REF   +A  F
Sbjct: 168 YLRPETAQGMFVDFEHLFRFYREKLPFGVTQIGKAYRNEISPRQGVIRLREFTQAEAEIF 227

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS-----------HEFIV 212
               + +   ++ +  + LR +     +      E      +L+           HEF+ 
Sbjct: 228 INPTDKNHPRFSMIEDTVLRYYPASHQRVSHPAYEDDGGIIELTTRDAVDRAIVAHEFLA 287

Query: 213 LA---------------------------------DTGETQVFCSKDFM----------- 228
                                              D  + +V   +              
Sbjct: 288 YHLVLTHLFLVRVGIDPARLRFRQHQPDEMAHYAVDCWDAEVLTDRFGWVEIVGIADRSD 347

Query: 229 -DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV------------HNEKLFDSLPENK 275
            D    +E++  D  + +     +         D+                    L E  
Sbjct: 348 YDLSSHAEHSKKDLSVLIEYDTPKQAERIVVKPDMSVIGPLYKGKAGKVRAALIGLGEED 407

Query: 276 RV-SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH- 333
                  IE+        +  +      +   G+     +     G  R++ A +E S  
Sbjct: 408 LTGDEIKIEIDGEIVLIPRDLVEYETVIEEVRGERVIPHVIEPSFGIDRIIYAALEHSFS 467

Query: 334 -------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                      +  P  VAP +++++ +    +   +    I   L + G  V +DD G 
Sbjct: 468 EEPVEGVTRNVLHLPAEVAPVQVAMLPLLTR-EELIEPALAIVKTLRENGVFVSYDDAG- 525

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            IG ++   D +G P  V +  + + D  V I+ R +  +  + + E+         
Sbjct: 526 TIGRRYRRNDEIGTPFSVTIDYETLDDDTVTIRDRDSMAQIRVPVGELAETIRAMIR 582



 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G Y + PLG      +  I R+      G  E+  PT+  A ++  SG    +   M+ 
Sbjct: 37  AGFYDYGPLGAMLKRRIEDIWRKMYVIEEGFYEIETPTIGIAAIFDASGHTRGFSDPMVV 96

Query: 96  LADRNDKAMIYGPTHEEV 113
            +   D A       E +
Sbjct: 97  CSGC-DHAFRADHLIEGI 113


>gi|307710165|ref|ZP_07646609.1| histidyl-tRNA synthetase [Streptococcus mitis SK564]
 gi|307619145|gb|EFN98277.1| histidyl-tRNA synthetase [Streptococcus mitis SK564]
          Length = 426

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 120/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVSYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I    Q       ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGQGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SL+ +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLDAISQNFSEIFEK 423


>gi|306834557|ref|ZP_07467670.1| histidine--tRNA ligase [Streptococcus bovis ATCC 700338]
 gi|296777684|gb|ADH43101.1| histidyl-tRNA synthetase [uncultured bacterium MID12]
 gi|304423359|gb|EFM26512.1| histidine--tRNA ligase [Streptococcus bovis ATCC 700338]
          Length = 425

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 58/406 (14%), Positives = 114/406 (28%), Gaps = 13/406 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V A+ RE   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEAVARETFKKYNYSEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  +         P   Y I   FR E      +    +  ++   S + 
Sbjct: 80  PEGTAPVVRSFVENKLFAPEVQKPVKMYYIGSMFRYERPQAGRLREFHQVGVECFGSANP 139

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGET 219
             +    +        L I       +    A S         +++         D+   
Sbjct: 140 ATDVETIAMAYQLFQILGIKDVTLHLNTLGSAVSRSAYRQALIDYLTPMREQLSKDSQRR 199

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDSLPENKRVS 278
                   +D     +    ++  S+   ++    A + A   +        + +   V 
Sbjct: 200 LDENPLRVLDSKEKEDKIAVENAPSILDYLDDESQAHFDAVRSMLETLNIPYVIDTNMVR 259

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                   IF F T            A G+   +     G        A+          
Sbjct: 260 GLDYYNHTIFEFITTVDKSELT--ICAGGRYDSLVEYFDGPETPGFGFALGLERLLLILE 317

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +   K   + I    Q       ++   +   G     D +G +I +QF  AD  
Sbjct: 318 KQGIELPVEKEMDVYIAVLGQGANLKALELVQAVRNQGFSAERDYLGRKIKAQFKSADAF 377

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
                + +G   +   +V +K+  T     +S +E+ N  +   + 
Sbjct: 378 NAKTIITLGESEIEAGQVAVKNNKTREEVTVSFDEIANNFAEVLNK 423


>gi|169806666|ref|XP_001828077.1| glycyl-tRNA synthetase [Enterocytozoon bieneusi H348]
 gi|161779205|gb|EDQ31229.1| glycyl-tRNA synthetase [Enterocytozoon bieneusi H348]
          Length = 625

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/393 (13%), Positives = 120/393 (30%), Gaps = 48/393 (12%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ND   +     + +  +  + +  +   +PF  Y I   +R+E+  R G++R++EF   +
Sbjct: 220 NDHQYMRPELAQGIFINFKKGYDFNNGQMPFAIYSIGKSYRNEISARGGMLRTKEFYQAE 279

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA-------ESGPIGGDLSHEFIV 212
              F         S        L         ++ +RA        S  +   L+  ++ 
Sbjct: 280 IEYFTEDKTHKDFSNIADIELVLLPNSSESSFTLSLRAALNQNIISSEAMCVFLARGYLF 339

Query: 213 LADTG--ETQVFCSKD-FMDFPIPSENTDFDDIISLNSIVEQWTAPY------------- 256
           L D G     + C +    +    + +    +I+++   VE                   
Sbjct: 340 LIDIGIYPQTIRCRQHRCNEMAHYAHDCWDIEILTITGWVECIGIADRSNYDLTVHAKNI 399

Query: 257 ------------AATSDVHNEKLFDSLPENKRVSARGI--------EVGHIFYFGTKYSL 296
                           ++  + +   L E K +                 + Y  T    
Sbjct: 400 NSYVKKKIQPIRTKKLEIIKKHIIKDLKEEKYIEFEQYVQSIPVDNYKNKVNYDVTFNGK 459

Query: 297 PMSATFKGADGKDHYVQMG--SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL--- 351
             +        +             G  R++ A+IE +          ++ P        
Sbjct: 460 VYNLRVIDKIIEHVEYIPTVIEPSFGISRILYALIEQNLLFYTNRTVLALKPKLCFKHVS 519

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I    ++ +      K+     K       +     IG ++  +D +G P  + V S+  
Sbjct: 520 ITTLINNTITDKYLNKLENDAIKSNIRYQINRRNVSIGKKYFSSDEIGIPFFITVDSETN 579

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +  V I+ R T  +  + +E+ IN   +  + 
Sbjct: 580 INQTVTIRDRNTMSQIRVQIEDAINIVVNLINE 612



 Score = 43.6 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 9/72 (12%), Positives = 23/72 (31%), Gaps = 4/72 (5%)

Query: 24 KLMLRTGMIHQH----SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
          +LM       Q       G   + P+     + +    ++       +E+   ++   ++
Sbjct: 22 QLMKHRFFFTQVEYPVQNGFLEYGPVMTVVKNEIINSWKKIVVDENMLEIDTSSIVPYEV 81

Query: 80 WVESGRYDSYGK 91
             SG  D +  
Sbjct: 82 LKNSGHIDKFCD 93


>gi|77409694|ref|ZP_00786359.1| prolyl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77171692|gb|EAO74896.1| prolyl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 69

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 42/63 (66%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREE 60
          M++SK  +P L+E P DA++ SH LM+R G + Q S GIY++LPL  + ++    I+R+E
Sbjct: 1  MKQSKMLIPTLREMPSDAQVISHALMVRAGYVRQVSAGIYAYLPLANRTIEKXKTIMRQE 60

Query: 61 QNR 63
            +
Sbjct: 61 FEK 63


>gi|325695668|gb|EGD37567.1| histidine--tRNA ligase [Streptococcus sanguinis SK150]
          Length = 426

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 58/402 (14%), Positives = 115/402 (28%), Gaps = 25/402 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
           +   +     +M     + F  +G+ ++ +   S       +                  
Sbjct: 137 SNPATD---VEMIAMAAQFFKDIGITNVSLELNSLGNPESRAAYRQALIDYLTPLKASLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D   P +    +   S+   +++ +  Y A      E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEPEDKVAVEGAPSILDYLDEESCAYFAAVRSMLETLQIPYVI 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               V         IF F T+ +         A G+   +     G     V   +    
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLT--ICAGGRYDGLVAYFGGPETPGVGFGMGLER 311

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      +       + +            ++   L   G     D +  ++ +QF
Sbjct: 312 LLLVLDKQGVELPIETALDVYVAVLGASANGRALELVQALRAQGFAAERDYLDRKLKAQF 371

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             AD+      + +G   V   +V +K+        +SL+++
Sbjct: 372 KSADIFKAKTLITLGESEVESGQVTVKNNHNREEITVSLDQI 413


>gi|150002813|ref|YP_001297557.1| glycyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|254882314|ref|ZP_05255024.1| glycyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294777258|ref|ZP_06742713.1| glycine--tRNA ligase [Bacteroides vulgatus PC510]
 gi|319643076|ref|ZP_07997707.1| glycyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
 gi|149931237|gb|ABR37935.1| glycyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|254835107|gb|EET15416.1| glycyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294448878|gb|EFG17423.1| glycine--tRNA ligase [Bacteroides vulgatus PC510]
 gi|317385244|gb|EFV66192.1| glycyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
          Length = 513

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 112/355 (31%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   AD   K  +   T + +  +           +PF   QI   FR+E+  R  
Sbjct: 198 FSTEMGSTADGAMKIYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      + K   + L+    LG      R         L+H
Sbjct: 258 IFRMREFEQMEMQFFVK-PGTELEWFPKWKETRLKWHKALGFGDDHYRFHD---HDKLAH 313

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                 D      F  K         E         L+   +             NE   
Sbjct: 314 YANAATDIEFLMPFGFK-------EVEGIHSRTNFDLSQHEKFSGKSIKYFDPELNESYT 366

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             + E      R             +   MSA +                          
Sbjct: 367 PYVIETSIGVDR------------MFLSIMSAAYTEE----------------------T 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P ++AP K++++ +   D    +   +I   L        +D+    I
Sbjct: 393 LENGETRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIMNDLK-FHFHCQYDEKD-SI 449

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  + V  + + D+ V +++R T  +E +++ E+ N  + + S
Sbjct: 450 GKRYRRQDAIGTPYCITVDHQTLEDNCVTLRNRDTMQQERVAISELNNIIADKVS 504


>gi|126466028|ref|YP_001041137.1| glycyl-tRNA synthetase [Staphylothermus marinus F1]
 gi|126014851|gb|ABN70229.1| glycyl-tRNA synthetase [Staphylothermus marinus F1]
          Length = 588

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 67/547 (12%), Positives = 136/547 (24%), Gaps = 142/547 (25%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTG-AIEMSVPTLQSA----------------- 77
            G Y + P G     N+           TG  +E+  P +                    
Sbjct: 33  AGFYDFGPNGVLIKRNIINEWLNNLVYNTGLVLEIETPIITPRIVLKASGHEDHFTDPIT 92

Query: 78  -----------------------------DLWV----ESGRYDSYGKEMLRLAD------ 98
                                        +LW      + R    G E+ +         
Sbjct: 93  ECTRCGRVFRADHLIEEALGIRAEGLSMDELWKLIKEHNIRCPECGGELTKPKPALLLFK 152

Query: 99  ------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                 +   A +   T + +          +   LP    QI    R+E+ PR G++R 
Sbjct: 153 TEIGPYKGSPAYLRPETAQGMFVSFKHVLNIARNKLPLGIAQIGRVGRNEISPRQGLLRL 212

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKM-----------------------------FVSYLR 183
           REF + +   F    +  + +   M                                   
Sbjct: 213 REFTIMELEFFFDPEKAFEETMKYMTDEIRNEKLNIITAEDKLRGEEKTRKYTAIELIEN 272

Query: 184 IFHRLGLKSIPMRA----------ESGPIGGDLS---HEFIVLADTGETQVFCSKDFM-D 229
              +    +  M             S  I  D      +      T + +V+  K    +
Sbjct: 273 KIVKNPWMAYWMALGNIFLRKLGISSEKIRFDEKLPEEKAHYSEQTFDQEVYTEKYGWIE 332

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
               S  T +D    +       T        +  + +       K     G ++G +  
Sbjct: 333 VAGYSYRTTYDLSRHIKYSKADLTYFKKYDKPIKKKIVKIVPNPKKIREIVGKDIGTVMK 392

Query: 290 ---------FGTKYSLPMSATFKGA----------------DGKDHYVQMGSYGIGAMRV 324
                       + +                           G+     +     G  R+
Sbjct: 393 KLNEIPAEKILEELNKNNYVEISNYKLSRECFIISEKEETIHGEKIIPHVVEPSFGLERI 452

Query: 325 VAAVIESSHDGK---------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
              V+E+S                           +   K   +       ++Y  L + 
Sbjct: 453 FYVVLENSISIARDGRIVLKLPPRIAPYKVAVFPLVTGNKPEHKKMVSIARQVYRALLEN 512

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
               ++D+ G  IG ++A AD +G P  + +  + + D  V ++ R +  +  + ++E+ 
Sbjct: 513 NILAYYDEEG-SIGRRYARADEIGIPYAITIDYQTLEDETVTLRDRDSREQIRLHIQELH 571

Query: 436 NYASHRF 442
           +      
Sbjct: 572 DKLISLL 578


>gi|88604151|ref|YP_504329.1| histidyl-tRNA synthetase [Methanospirillum hungatei JF-1]
 gi|121731779|sp|Q2FTC5|SYH_METHJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|88189613|gb|ABD42610.1| histidyl-tRNA synthetase [Methanospirillum hungatei JF-1]
          Length = 408

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 129/417 (30%), Gaps = 17/417 (4%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSY 89
           MI +   G    LP   +    + A +R      G  E++ P  +  +L+   SG  +  
Sbjct: 1   MIQKPR-GTRDMLPDEMERRREIEARMRARARLYGFREIATPVFEELELFTIRSG--EGI 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
             EM    D+  +++   P     +  ++    +S  N P  +      FR E   +   
Sbjct: 58  INEMYVFEDKGGRSLALRPELTAPVLRMYVEEGRS-LNKPVKWCYFADCFRYERPQKGRY 116

Query: 150 MRSREF--LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGD 205
            +  +F   +  A S     E     Y+ +  + +    R+G  S      A+       
Sbjct: 117 RQFWQFGAELIGADSAMGDAEVITLGYDLLRTAGVTFVLRIGHLSFMRTLLADLADGDKK 176

Query: 206 LSHEFIVLADTGETQVFCSKDFMD-FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               F+   +      +      D    P         +     +       A   ++  
Sbjct: 177 KIRAFLDKREEEAAITYLRDIGRDDLCDPLIRLCGARTLEDVFAIIGEIPEAARVREMFA 236

Query: 265 EKLFDSLP-ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 +P E     ARG++      F   ++  + A  +   G  + +   ++  G   
Sbjct: 237 ILDASGIPYEINPAIARGLDYYTGVVF-ECFAEGLGAENQILGGGAYRL---AHLFGGED 292

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
             +A      D   +   ++        + I   ++  RD    I  +    G     D 
Sbjct: 293 TPSAGFAIGFDRVMVALGEASWVPWQPQVMIITTNEG-RDYALTIAGQFRMNGIITETDL 351

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           M     +Q   A        VI+G   V    + +K    G +E ++ +E I   + 
Sbjct: 352 MDRSFSAQMKAAGKS-ADYAVIIGKDEVETGTITLKDLKAGTQEKITADEAIQKLTS 407


>gi|150399673|ref|YP_001323440.1| histidyl-tRNA synthetase [Methanococcus vannielii SB]
 gi|166228584|sp|A6UQQ6|SYH_METVS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|150012376|gb|ABR54828.1| histidyl-tRNA synthetase [Methanococcus vannielii SB]
          Length = 418

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 68/423 (16%), Positives = 125/423 (29%), Gaps = 23/423 (5%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSY 89
           M  +  KG   +LP+  K    +   +R   +     E++ PT +S +L   ++G  +  
Sbjct: 1   MFQKP-KGTRDFLPVEMKKRKLIEKKLRNIFDSYNFSEINTPTFESFELLSKKTG--EEI 57

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
             ++    D  ++ M   P     +   + +  K+    P   Y     FR E       
Sbjct: 58  RNQLFVFNDHGNREMGLRPEFTSSVARFYINEFKN-TPKPVKMYYFGNCFRYENPQAG-- 114

Query: 150 MRSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP--------MRAESG 200
            R REF    A               N        I     +             +    
Sbjct: 115 -RYREFWQMGAELIGSNKSISDAEVLNMAIEGLKSINMDFEINIGHLGVLKGVFEKYSLS 173

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI------ISLNSIVEQWTA 254
                L    I   DT   +    K   +  I      F+ +        ++ + E+ T 
Sbjct: 174 EEDETLIRRLIDKEDTEGLKQVLLKIEEEKNIEISKKVFEVLTLKGGKEVISKLKEKLTD 233

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              +   ++N      L  +  V   GI  G  +Y G  + +                  
Sbjct: 234 FEKSLDALNNLDEILELVPHDYVVNFGIARGLDYYTGMVFEIYGKKEGARQVCGGGRYDN 293

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                   +  A       D   +   D         I    +D      C KI   L  
Sbjct: 294 LIELFEGEKSPAVGFAYGFDRIILNIDDFEVQDDSIFIIPVKNDIFLLKECLKIAKTLRD 353

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V  D MG ++      A+       +I+G   +   K+ +K+  TG +  + ++++
Sbjct: 354 FGNPVEIDLMGRKLNKALNYANSKNIKRVIIIGENDIFSGKIPLKNMETGEQVLIDVKDL 413

Query: 435 INY 437
            N+
Sbjct: 414 KNF 416


>gi|332828261|gb|EGK00973.1| glycyl-tRNA synthetase [Dysgonomonas gadei ATCC BAA-286]
          Length = 511

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 118/364 (32%), Gaps = 66/364 (18%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   AD   K  +   T + +  +           +PF   QI   FR+E+  R  
Sbjct: 197 FATEMGSTADGAMKVYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEIVARQF 256

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      + K   + ++    LG              GD  +
Sbjct: 257 IFRMREFEQMEMQFFVR-PGEELEWFAKWKETRMKWHKALG-------------YGDHKY 302

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            F             +    + P                        +     +H+   F
Sbjct: 303 RFHDHDKLAHYANAATDIEFEMPF----------------------GFKEVEGIHSRTDF 340

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D                       +YS      F     K +   +    IG  R+  + 
Sbjct: 341 DLSSHE------------------QYSGKKLQYFDPELNKSYTPYVIETSIGVDRMFLST 382

Query: 329 IESSH---------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           + +++             +  P ++AP K++++ +   D    +  ++I   L       
Sbjct: 383 MSAAYCEEELEGGESRVVLKLPAALAPIKLAVLPLIKKD-GLPEKAQEIIDNLK-FDFKC 440

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+    IG ++   D +G P  V V  + + D+ V I++R T  +E ++++ + +  +
Sbjct: 441 QYDEKD-SIGKRYRRQDAIGTPYCVTVDHQSLEDNTVTIRYRDTMEQERVAIDRLADIIA 499

Query: 440 HRFS 443
            + S
Sbjct: 500 DKVS 503


>gi|323456994|gb|EGB12860.1| hypothetical protein AURANDRAFT_58606 [Aureococcus anophagefferens]
          Length = 455

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 60/441 (13%), Positives = 124/441 (28%), Gaps = 48/441 (10%)

Query: 38  GIYSWLPLGQKALDNV-NAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G Y + PLG +   N+     R+          +    + S  +W  SG    +   M+ 
Sbjct: 26  GFYDYGPLGSELKRNIKERWWRDMVRARDDVCGVDSSIIASPRIWEASGHVGGFSDPMVD 85

Query: 96  LAD-----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
                   R D+        ++  +    + ++   +             D         
Sbjct: 86  DKTTKKRYRADQLFYAELACDDGSSLGCVTCLEDAADED-RPRIPPPDAPDRPGDLTAPR 144

Query: 151 RSREFLMKDAYSFDLT-------PEGSKHSYNKMFVSYL--------RIFHRLGLKSIPM 195
                      + +         PE ++  +                    ++G      
Sbjct: 145 DFNLMFQTSVGAAEDNSAAAYLRPETAQGIFVNFKNVASTARGFKLPYGIGQIGKAFRNE 204

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-- 253
                 I      E + +           +      I        +   L   +  +   
Sbjct: 205 ITPRNFIFRSREFEQMEIEYFLPPGDDAWRAAHARWIDDCRAWLVEACGLREELLGFEVH 264

Query: 254 ---APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A YA        +      E + ++ARG          T  S      F     + +
Sbjct: 265 DKLAHYALACTDITFRFPFGEQELQGIAARGSFDLKQH---TDASGKSLEYFDDGTKEKY 321

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGII--------WPDSVAPFKISLINIKAHDQVCR 362
             Q+    IG  R+  AV+ S+ +   +         +  ++AP K++++ +   D    
Sbjct: 322 LPQVIKPSIGVDRLFLAVVCSAFEEDEVNGEKRSVLKFHPAMAPVKVAILPLVKKDAGIN 381

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D    +Y  L K   +   D  G  IG ++   D +  P         + D  V ++ R 
Sbjct: 382 DIAAALYGDLKKR-YNCQLDAAG-NIGRRYRRQDEIARP-------SALDDGAVTVRDRD 432

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +  + +E+V+ Y +    
Sbjct: 433 TTDQVRLKIEDVVPYVTKLVE 453


>gi|323350735|ref|ZP_08086396.1| histidine--tRNA ligase [Streptococcus sanguinis VMC66]
 gi|322123155|gb|EFX94846.1| histidine--tRNA ligase [Streptococcus sanguinis VMC66]
          Length = 426

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 59/402 (14%), Positives = 117/402 (29%), Gaps = 25/402 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
           +   +     +M     + F  +G+ ++ +   S       +                  
Sbjct: 137 SNPATD---VEMIAMAAQFFKDIGITNVSLELNSLGNPESRAAYRQALIDYLTPLKASLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D   P +    +   S+   +++ ++ Y A      E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESSTYFAAVRSMLETLQIPYVI 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               V         IF F T+ +         A G+   +     G     V   +    
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLT--ICAGGRYDGLVAYFGGPETPGVGFGMGLER 311

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      +       + +            ++   L   G  V  D +  ++ +QF
Sbjct: 312 LLLVLDKQGVELPIETALDVYVAVLGAGANGRALELVQALRAQGFAVERDYLDRKLKAQF 371

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             AD+      + +G   V   +V +K+        +SL+++
Sbjct: 372 KSADIFKAKTLITLGESEVESGQVTVKNNHNREEITVSLDQI 413


>gi|294495367|ref|YP_003541860.1| glycyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
 gi|292666366|gb|ADE36215.1| glycyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
          Length = 585

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 1/127 (0%)

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           +         A  E   +   + +   +AP +++++ +  +         +I + L  +G
Sbjct: 446 HAYETEMAPTAEEEKEEERTLLKFKSEIAPIQVAVLPLMKNSDELVSKGRQIVSNLKDMG 505

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V +DD G  IG ++   D +G P  + +  + + D+ V I+ R T  +    + ++  
Sbjct: 506 LMVAYDDSG-TIGRRYRRNDEIGTPYSITIDYETLEDNTVTIRERDTMKQVRTPVSDLEG 564

Query: 437 YASHRFS 443
             +    
Sbjct: 565 NLNKLIR 571



 Score = 58.6 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G Y + PLG      +  I R+    R G +E+  PT+   D++V SG    +   +  
Sbjct: 28  AGFYDYGPLGSTLKRRIENIWRQFYVVREGFMEIETPTIGIEDIFVASGHVGGFSDPLCE 87

Query: 96  LADRND 101
                +
Sbjct: 88  CEQCKE 93


>gi|327394802|dbj|BAK12224.1| histidyl-tRNA synthetase HisS [Pantoea ananatis AJ13355]
          Length = 414

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 56/404 (13%), Positives = 111/404 (27%), Gaps = 21/404 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLAD 98
            +LP        V  +++      G  E+ +P ++   L+  + G   D   KEM    D
Sbjct: 3   DFLPADTAIWQRVEDVLKSVLASYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFDD 62

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSRE 154
           RN +++   P            H   Y      +Y +   FR E       R       E
Sbjct: 63  RNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWY-MGPMFRYERPQKGRYRQFHQIGVE 121

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                    D         + K            + +G            +     H+  
Sbjct: 122 VFGLQGPDIDAELIMLNARWWKALGIADHVRLELNSIGSPEARANYRDALVAFLEQHKEA 181

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISL--NSIVEQWTAPYAATSDVHNE---- 265
           +  D            +D   P   T  +D   L     VE         + + +     
Sbjct: 182 LDEDCKRRMYSNPMRVLDSKNPDIQTLLNDAPQLGDYLDVESREHFDGLRALLDDAGIAY 241

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            +   L        R +        G++ ++     + G   +         G       
Sbjct: 242 TVNQRLVRGLDYYNRTVIEWVTDSLGSQGTVCGGGRYDGLVEQLGGRATPGVGFAMGMER 301

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             ++  + + +      +       + + +          EK+   L ++     +   G
Sbjct: 302 LVLLVQAVNPEFE---PARNVDVYVIASGQGVQSAAMQLAEKLRDHLPEMKLMTNF--GG 356

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
                QFA AD  G  + +++G       +V IK    G ++ +
Sbjct: 357 GNFKKQFARADKWGARVALVLGEDEQKAGQVVIKDLRNGEQQTL 400


>gi|325847052|ref|ZP_08169878.1| histidine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481024|gb|EGC84069.1| histidine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 432

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 56/431 (12%), Positives = 121/431 (28%), Gaps = 37/431 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G+   LP  Q   D++  II E       + +  P ++  D+    G  ++  +     
Sbjct: 10  AGVMELLPDDQLVFDHIKQIIEETFLSYQFLPIDTPAIEKNDILFAKGGGETEKQIFGID 69

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           + + D ++ +  T          S   S  N PF  YQI   +R E   +    R +EF 
Sbjct: 70  SSKKDMSLRFDLTVPLARY---VSEHFSDLNFPFKRYQIGKVYRGERNQKG---RYKEFY 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             D            +      V Y                    +  +   E I ++D 
Sbjct: 124 QCDIDIIGNDSLSIHNDALLPKVIYDIFQKLDFKGIKFHINNRKLL--NGFFESIEISDK 181

Query: 217 GE----------------TQVFCSKDFMDFPIPSENTDFDDIISLN--------SIVEQW 252
            E                 ++       D  +       +   +           + + +
Sbjct: 182 EEVLRTIDKKAKIGDEKTKELLTELCGEDKALKLMELINNKRDNKELLEYLESLDLNDNY 241

Query: 253 TAPYAATSDVHNEKLFDSLPEN----KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
                   +V++  +   + +          RG++      + T      S     + G+
Sbjct: 242 KLGLRELKEVYDYMIKFGIDDESIMIDLSITRGLDYYTSTVYETFLDGYESIGSVCSGGR 301

Query: 309 DHYVQMGSYGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
              +             ++  +         +          +   I   D+        
Sbjct: 302 YENLAGNFSKQNLPGVGLSIGLTRLFYQLQELGLLEKYREDFTDCLIIPMDEKLNFYAID 361

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I   L   G  V       +   +   AD +G    +I+G +   +  V +K+   G + 
Sbjct: 362 IGNDLKNKGYKVDIYLEDGKFKKKINYADKIGVKKVIIIGQEEYENKMVSVKNMEDGNQV 421

Query: 428 DMSLEEVINYA 438
            + +E++ +Y 
Sbjct: 422 SVKIEDIGDYL 432


>gi|187729858|ref|YP_001789032.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
 gi|170676050|dbj|BAG14320.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
          Length = 428

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 59/416 (14%), Positives = 120/416 (28%), Gaps = 22/416 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G    LP   +    V  I R+  N+ G   +  P  ++ +++        D   K+M  
Sbjct: 11  GTVDILPGEIEVWQKVEKIARDTFNQFGYRGIRTPIFENYNVFARNVGDTSDIVEKQMYD 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             DR  + +   P         +  +         P+  Y +   FR E        R R
Sbjct: 71  FDDRGGRRLALRPEGTAGTVRAYVENKLFGPEYPKPYKVYYMGPMFRYERPQSG---RQR 127

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGG 204
           +F      + +                              + LG K          I  
Sbjct: 128 QFTQIGCEALNSESPQIDVEVISEALQFFKQLGINDLKLTVNTLGDKETRDAYHKALIDY 187

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              +   +  D+ E         +D    ++     +  S+   +  ++A Y        
Sbjct: 188 LKPYYDQLSDDSKERMYKNPLRVLDSKDETDQKIVANAPSILDSLSDYSAKYFEEVKKLL 247

Query: 265 EKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           +KL     E      RG++     IF      S      +    G   Y  + S   G  
Sbjct: 248 DKLNIKY-EIDSDMVRGLDYYTQTIFEI-MSNSDVFGGGYVTVCGGGRYNGLISQLGGPD 305

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVF 380
                          ++  ++         ++   + D    +   ++  ++ K G    
Sbjct: 306 EGGIGYGIGVERLLLLVQKENPDFTPKYGPDVFFASADDEGDELAFEVLDKIRKNGVSAD 365

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +    ++GSQ   A         ++G K V + K E+    +   + +S++E  +
Sbjct: 366 KNYQDVKVGSQIKEAIRSKPRYYAVIGKKEVEEGKFELSKVDSDQTQTVSVKEFED 421


>gi|237740163|ref|ZP_04570644.1| histidyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
 gi|229422180|gb|EEO37227.1| histidyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
          Length = 413

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 60/405 (14%), Positives = 118/405 (29%), Gaps = 33/405 (8%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + +E     G      P  +  DL+        D   KEM    D+ D+++   P +
Sbjct: 24  ISNVTQEMFENYGYKFAKTPIFEETDLFKRGIGEATDVVEKEMYTFKDKGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEG 169
              M   +  +    +     FY     FR E        R REF       F + +P  
Sbjct: 84  TASMVRCYLENSIYAKEDVSRFYYNGSMFRYERPQAG---RQREFNQIGVEVFGEKSPIL 140

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                   +    ++        I       S  I  +   E    +   +    C    
Sbjct: 141 DAEVIAMGYNFLTKLGITDLEVKINSVGSKGSRTIYREKLVE-HFQSHLDDMCEDCKDRI 199

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENKRVSA 279
              P+   +   D                      H E++   L         +   V  
Sbjct: 200 NRNPLRLLDCKVDGDKDFYKSAPSIIDYLFEDERKHYEEVKKYLTIFGVKFTEDPTLVRG 259

Query: 280 RGIEVGHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                  +F       G++ ++     +     +     + ++G  A      ++   + 
Sbjct: 260 LDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAFGFAAGVERVMMLIGDN- 318

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                      P  +  + I        +   KI   L K    V+ D   + + S    
Sbjct: 319 ----------YPKDVPDVYIAWLGDDTIETAMKIADSLRKENVKVYVDYSSKGMKSHMKK 368

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           AD L     +I+G   ++   V +K   T  ++++ +EE+IN+  
Sbjct: 369 ADKLETKYCIILGEDELNKGIVLLKDFSTREQKEVKIEEIINHIK 413


>gi|188533175|ref|YP_001906972.1| histidyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
 gi|229558666|sp|B2VE90|SYH_ERWT9 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|188028217|emb|CAO96075.1| Histidyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
          Length = 425

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 53/410 (12%), Positives = 119/410 (29%), Gaps = 19/410 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        V  I+++  +  G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTAVWQRVEQILKQVLSSYGFSEIRMPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF---RDELRPRFGVMRS 152
             DRN +++   P            H   Y      +Y   +       + R R      
Sbjct: 70  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRYERPQKGRYRQFHQIG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + K            + +G         +  +     H 
Sbjct: 130 AEVFGLQGPDIDAELIMMTARWWKALGIADHVSLELNSIGSLEARANYRNALVAFLEQHI 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
            ++  D            +D   P      +D  +L   ++  +   +A      +    
Sbjct: 190 EVLDEDCKRRMYSNPLRVLDSKNPDIQALLNDAPALGDYLDDESREHFAGLCHQLDAAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G + ++     + G   +       + G     
Sbjct: 250 AYRVNQRLVRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++  + + +              + +            E++   L ++     +  
Sbjct: 310 ERLVLLVQAVNPEFE---PMRVVDVYVIASGDGVQSAAMLLAERLRDALPELKLMTNF-- 364

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G     QFA AD  G  + +++G   V++ ++ IK    G ++ ++  +
Sbjct: 365 GGGNFKKQFARADKWGARIALVLGEDEVANKQLVIKDLRNGEQQTLAQSD 414


>gi|149908868|ref|ZP_01897528.1| histidyl-tRNA synthetase [Moritella sp. PE36]
 gi|149808142|gb|EDM68083.1| histidyl-tRNA synthetase [Moritella sp. PE36]
          Length = 426

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 63/420 (15%), Positives = 126/420 (30%), Gaps = 26/420 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V +I+R+     G  E+ +P ++S +L+  + G   D   KEM    DRN
Sbjct: 15  LPEQTPVWQKVESILRDTVAAYGYSEIRMPIVESTNLFKRAIGEVTDVVEKEMYTFDDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P            +   Y      +Y     FR E   +    R R+F     
Sbjct: 75  GDSLTLRPEGTASTVRAGIQNGLLYNQERRMWYI-GPMFRHERPQKG---RYRQFHQFGV 130

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F L    +      +     R+       ++ + +           E ++    G   
Sbjct: 131 EIFGLKGADTDAEVILLTARLWRLLGIEQHVTLQLNSLGSSAERSAHKEALISFLEGFKD 190

Query: 221 VF---CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
                  +     P+   ++   ++ +L +        Y   +  H    FD L +    
Sbjct: 191 QLDEESQRRMYTNPLRVLDSKNPNVQALLNDAPSLADYYGEETKAH----FDGLCKMLDS 246

Query: 278 SARGIEVGHIFYFGTKYSLPMSAT-FKGADGKDHYVQMGSYGIGAMRVV---------AA 327
           +    ++ H    G  Y           + G    V  G    G +  +          A
Sbjct: 247 AGVNYQINHRLVRGLDYYNYTVFEWVTESLGAQGTVCGGGRYDGLVEQLGGKATPAVGFA 306

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMG 385
           +              +        + I A  +        +  +L            + G
Sbjct: 307 LGIERLVLLLETLELTADIAGAVDVYIAALGEGADMHGMLLAEQLRDQMPNVKFMMHNGG 366

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRFSN 444
                Q   AD  G  + +I+GS  + + +V +K       ++ +++ E++N  +   S 
Sbjct: 367 GNFKKQLKRADQNGAKVALILGSDEIENQQVTVKDLTGKTQQQTIAVTELVNKLTTLLSK 426


>gi|227543636|ref|ZP_03973685.1| histidyl-tRNA synthetase [Lactobacillus reuteri CF48-3A]
 gi|300908692|ref|ZP_07126155.1| histidine--tRNA ligase [Lactobacillus reuteri SD2112]
 gi|227186380|gb|EEI66451.1| histidyl-tRNA synthetase [Lactobacillus reuteri CF48-3A]
 gi|300894099|gb|EFK87457.1| histidine--tRNA ligase [Lactobacillus reuteri SD2112]
          Length = 425

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 60/414 (14%), Positives = 121/414 (29%), Gaps = 18/414 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G    LP      + V    RE  N+ G   +  P  +   ++        D   KEM  
Sbjct: 8   GTADILPGTTSIWEKVEQNAREVFNQFGYRGIRTPMFEDYHVFSRNVGDTSDIVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   +  +         P+  Y +   FR E        R R
Sbjct: 68  FHDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYKVYYMGPMFRYERPQSG---RQR 124

Query: 154 EFLMKDAY-SFDLTPEGSKHSYNKMFV--------SYLRIFHRLGLKSIPMRAESGPIGG 204
           EF         + +P+      +            +   + + LG K +        I  
Sbjct: 125 EFHQIGVEALNNESPQIDVEVISMAMALFKKFGVPNVKLVINTLGDKKVREDYREALINY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              H   +  D+ E         +D     +     +  S+   +++ +  Y        
Sbjct: 185 LKPHYDELSKDSQERLYKNPLRVLDSKDEGDKKIVAEAPSILDYLDEESQAYFDEVQALL 244

Query: 265 EKL-FDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            KL  D   +   V         IF             T   A G+ + +     G    
Sbjct: 245 NKLGIDFEIDTNMVRGLDYYNHTIFEIMSDSPVFGGGYTTVCAGGRYNGLISQLGGPEEG 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            +   +              + AP     +   + DQ   +   ++ +++ + G     D
Sbjct: 305 GIGFGMGVERLMLLLQEENPAFAPQDQLDVFFASADQQGDEMAFEVLSKIRQQGIVADKD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             G ++G Q   A         + G++ V +   ++K+  T     + + + + 
Sbjct: 365 YSGVKVGKQIKEAFRRNAKYFAVFGAREVEEGTFQLKNAATKDATTIKISDFVA 418


>gi|116872949|ref|YP_849730.1| histidyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741827|emb|CAK20951.1| histidyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 425

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 61/428 (14%), Positives = 115/428 (26%), Gaps = 44/428 (10%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            +    ++        E+  P  +  +L+        D   KE
Sbjct: 5   LPRGTRDILPEEVSKWHFLEDEFKKVCENYQYEEIRTPIFEHTELFERGVGDSTDIVSKE 64

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +   F  H      + P   Y  +  FR E        R
Sbjct: 65  MYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGG---R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF- 210
            R+F      +                   +  F ++GL +I +   S            
Sbjct: 122 QRQFTQMGIEALGSDDPSIDVEV---ISLAMAFFRKIGLTNIKLVINSLGDKESRLKHRE 178

Query: 211 ----IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E    C       P+   +   D    L              S  + E 
Sbjct: 179 ALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHENPLIKSAPSILDFLNEESIAYFEN 238

Query: 267 LFDSLP------ENKRVSARGIEV--GHIFY-------FGTKYSLPMSATFKGADGKDHY 311
           + + L       E      RG++      F        FG K +L     + G   +   
Sbjct: 239 VKNYLTALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGG 298

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                 G G       +     D K             +                 +  +
Sbjct: 299 PDTPGIGFGIGVERILLALEKADIKIPAKKPLKVYVITAQP-------EAELKAVTLVNK 351

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G     D +  ++ +Q   A+       +I+G + +     ++KH  +G +E +S 
Sbjct: 352 LRQNGISAEKDYLKRKLKAQLKDANRKKANYTIILGEEELQTGNYQLKHMESGEQEAVSE 411

Query: 432 EEVINYAS 439
           + +I   +
Sbjct: 412 QTIIEKLT 419


>gi|68062839|ref|XP_673428.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56491269|emb|CAI02288.1| hypothetical protein PB300647.00.0 [Plasmodium berghei]
          Length = 245

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 5/128 (3%)

Query: 313 QMGSYGIGAM-RVVAAVIESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKI 368
            +     G   R +  +I    D KG+I P +VA +K  ++ I    + +    + C+ I
Sbjct: 2   FVHQTSWGCTTRSIGVMIMIHSDNKGLILPPNVAKYKAVIVPILYKNSDETAIFNYCKDI 61

Query: 369 YARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              L     +  +DD      G +F   +L G P+++ VG K + ++      R    + 
Sbjct: 62  EKVLKNAQINCIFDDRDLYSPGYKFNHWELRGIPIRIEVGPKDIQNNSCVFVRRDNNQKF 121

Query: 428 DMSLEEVI 435
           ++  E V+
Sbjct: 122 NIKKESVL 129


>gi|326501058|dbj|BAJ98760.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 691

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 85/292 (29%), Gaps = 28/292 (9%)

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                   +         +     +         +   +E   +      +F    +  +
Sbjct: 393 NEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLKAHSEKSGVPLVAHEKFSKPREVEK 452

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
             +  SK  +            +  +L ++ E+      A  +   E  F      K V 
Sbjct: 453 LVIVPSKKDLGLAFKGNQKMVVE--ALEAMSEKEAMDMKAALESKGEMNFQVCTLGKDVV 510

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                        TK  + +S   K    +     +     G  R++  + E S   +  
Sbjct: 511 I------------TKKMVSISMEKKVEHQRVFTPSVVEPSFGIGRIIYCLFEHSFYTRPS 558

Query: 339 IWPDSV---APFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              +       F   +  IK        +Q   DA + +   L+  G     D  G  IG
Sbjct: 559 KSEEEQLNVFRFPPIVAPIKCTVFPLVKNQEFDDAAKVLAKELTAAGISHIIDTTGISIG 618

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            ++A  D +G P  V V S      +V I+ R +  +  + ++EV +     
Sbjct: 619 RRYARTDEIGVPFAVTVDSAT----EVTIRERDSKQQVRVGIDEVASVVKEL 666



 Score = 54.0 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAI 67
           +E  R A + + +  L    +  I++   G+Y + P G     NV A  R+        +
Sbjct: 74  REEMRQAVVNTLERKLFYIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENML 133

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
           E+  P +    +   SG  + +   M++  ++           ++  
Sbjct: 134 EVDCPCVTPEVVLKASGHVEKFTDLMVKD-EKTGTCYRADHLLKDFC 179


>gi|299822822|ref|ZP_07054708.1| histidine--tRNA ligase [Listeria grayi DSM 20601]
 gi|299816351|gb|EFI83589.1| histidine--tRNA ligase [Listeria grayi DSM 20601]
          Length = 430

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 63/434 (14%), Positives = 117/434 (26%), Gaps = 40/434 (9%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            +     E        E+  P  +  +L+        D   KE
Sbjct: 5   LPRGTRDILPEEVAKWHFLERSFEEICTDYQYQEIRTPIFEHTELFERGVGDSTDIVTKE 64

Query: 93  MLRLADRNDKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +        +    N P   Y     FR E        +
Sbjct: 65  MYTFEDKGGRSLTLRPEGTASVVRAFVEHKMFGSPNQPNKLYYKGPMFRYERPQGGRQRQ 124

Query: 152 SREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
             +  ++   S+D              F        +L + S+  +         L   F
Sbjct: 125 FHQMGIEALGSYDPAIDVEVITLVMHFFQKIGLSNTKLVINSLGDKESRLRHREALIAHF 184

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDII--------SLNSIVEQWTAPYAATSDV 262
               D  E    C       P+   +   D            L+ + E  TA +      
Sbjct: 185 EPRID--EFCADCQNRLYKNPLRILDCKKDHDHPLVQSAPSILDYLNEASTAYFDKVKSY 242

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFY-------FGTKYSLPMSATFKG--ADGKDHYVQ 313
            +    D   +   V          F        FG K +L     + G   +       
Sbjct: 243 LDAVGLDCEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVQEFDGPETP 302

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
              +GIG  RV+ A+ ++                      +K            I   L 
Sbjct: 303 GIGFGIGVERVLLALEKAEVIIPEEKALACYVITAGEGTAVK---------AMSIMNTLR 353

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G     D    ++  Q   AD       +IVG + ++    ++K   +G +  ++ + 
Sbjct: 354 QQGISAEKDYQDRKLKGQLKDADRKNALFTIIVGEEELASGVYKLKDMKSGEQTAIAEDA 413

Query: 434 VINYASHRFSNNRP 447
           +    S +    + 
Sbjct: 414 IAATISKKLQTLKE 427


>gi|229496630|ref|ZP_04390344.1| glycyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
 gi|229316527|gb|EEN82446.1| glycyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
          Length = 518

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 86/253 (33%), Gaps = 16/253 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       GE   +            ++    D        E+  A YA  
Sbjct: 259 FRMREFEQMEMQFFVAPGEEMKWFEYWKKTRMAFHKSLGLGDNKYRYHDHEKL-AHYANA 317

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     ++     E + + +R            ++S      F    G+ +   +    I
Sbjct: 318 ATDIEYEMPFGFKEVEGIHSRTNYDLSRHE---EFSGKKLRYFDPQTGESYIPYVVETSI 374

Query: 320 GAMRVVAAVIESSH---------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R+  +++  ++             +  P ++AP K++++ +   D    +   ++  
Sbjct: 375 GVDRLFLSLMCGAYCEEPTENGEMRTVLRLPAALAPIKLAVLPLVRKD-GLDEKAREVVR 433

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L        +D+    IG ++   D +G P  + + ++ + D+ V I+ R T  +  ++
Sbjct: 434 ELR-FDFTCQYDEKD-SIGKRYRRQDAIGTPYCITIDNQTMEDNTVTIRERDTMEQHRVA 491

Query: 431 LEEVINYASHRFS 443
           + ++    + +  
Sbjct: 492 ITDLRKEIAQKVD 504


>gi|116618408|ref|YP_818779.1| histidyl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097255|gb|ABJ62406.1| histidyl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 433

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 123/419 (29%), Gaps = 21/419 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSY 89
           I Q  KG    LP       +V A+ R         E+  P  ++ +++  S     D  
Sbjct: 5   IFQRPKGTADLLPQKTVQWQHVEAVARVLFGDYNFKEIRTPLFENFEVFSRSAGDTSDVV 64

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRF 147
            KEM    D+ D+ +   P     +   +  +         P+  + +   FR E     
Sbjct: 65  TKEMYDFHDKGDRHIALRPEGTAGVVRAYVENKLYGPEFDKPYKAFYMGPMFRYERPQAG 124

Query: 148 GVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGG 204
              R R+F    A  F    P         +   +  +  +    +I    +  S     
Sbjct: 125 ---RFRQFHQIGAEVFGSDSPALDAEVIAMVIDFFQTLGLKNLKVAINTLGDKESRDAYR 181

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               +++      E            P+   ++         +         +  S  H 
Sbjct: 182 QALIDYLKPH-FDELSADSQARLEKNPLRVLDSKDPRDQVFVADAPSILDFLSEKSTKHW 240

Query: 265 EKLFDSLP------ENKRVSARGIEV--GHIFY-FGTKYSLPMSATFKGADGKDHYVQMG 315
           EKL D L       +      RG++     IF    T  SL  +AT  G       V+  
Sbjct: 241 EKLQDILTALNLDFDIDTTMVRGLDYYNDTIFEIMTTDESLKGAATIAGGGRYSGLVEEF 300

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
                        +E   D              +    +   D        KI   +   
Sbjct: 301 GGPETPGVGFGIGVERLLDLLQAQNVAPTEEQNLDFYVVNIGDTTDV-IATKIVQAVRSF 359

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G     D + +   +QF  AD       + +G + + +  V IK+   G ++ + L E+
Sbjct: 360 GYVAERDYLSKSAKAQFKAADRHHAKYVITIGEQELEEQIVNIKNMTNGEQKSVQLSEL 418


>gi|322378041|ref|ZP_08052528.1| histidine--tRNA ligase [Streptococcus sp. M334]
 gi|321281023|gb|EFX58036.1| histidine--tRNA ligase [Streptococcus sp. M334]
          Length = 426

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 120/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I    +       ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENSLDVYIAVLGEGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|194396786|ref|YP_002038709.1| histidyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|229558746|sp|B5E3C8|SYH_STRP4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|194356453|gb|ACF54901.1| histidyl-tRNA synthetase [Streptococcus pneumoniae G54]
          Length = 429

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 119/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVXTIVMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFATKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|145349033|ref|XP_001418945.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579175|gb|ABO97238.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 677

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 89/301 (29%), Gaps = 13/301 (4%)

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G   +R  L       D      +         Y        ++      E   + 
Sbjct: 350 NETLGYFIARCHLFLVQIGIDTNRLRFRQHLKHEMAHYAADCWDAEIQCSYGWIECVGLA 409

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA----AT 259
              + +    +D  +  +   + F      +      +   L    ++   P      A 
Sbjct: 410 DRSAFDLKAHSDKSKVDLVAYERFDKPIEETVVEITPNKKVLGKAFKKDAKPVTDALLAL 469

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           S+     L D+       +    E G        +++          G+++   +     
Sbjct: 470 SEADAFALQDAC-AANGSAPLQTENGEQQIAADMFTVEKVTKTVN--GRNYTPSVIEPSF 526

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA------HDQVCRDACEKIYARLS 373
           G  R++  + E +   +      +V      +  IK       +D        ++   L+
Sbjct: 527 GIGRIMYCMFEHAFYIRPDDEQKTVLRLTPVVAPIKTTIFPLVNDDKLNAIAAEMNKMLT 586

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G     D     +G ++A  D LG P  V V  + V+++ V ++ R +  +  + + E
Sbjct: 587 TNGISAKLDATAISVGKRYARTDELGVPFAVTVDHRSVTENTVTVRERDSCGQVRVPIPE 646

Query: 434 V 434
           V
Sbjct: 647 V 647



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 9/99 (9%)

Query: 13  ENPRDAE---IASHKLMLRTGMI--HQHS---KGIYSWLPLGQKALDNVNAIIREEQN-R 63
           E     E        L  R   I   +      G+Y + P G     NV    R+     
Sbjct: 59  EAKAKEEFRAKLGQLLEGRLFYIPSFKIYGGVAGLYDYGPPGCAVKSNVQQFWRQHFVLE 118

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
              +E+  P +    +   SG  + +   M+      D 
Sbjct: 119 ESMLEVECPAVTPEPVLRASGHVEKFTDLMVNDVVTKDC 157


>gi|262198185|ref|YP_003269394.1| histidyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
 gi|262081532|gb|ACY17501.1| histidyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
          Length = 423

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 61/417 (14%), Positives = 118/417 (28%), Gaps = 19/417 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP             R    R G  E+  P ++S +L+        D   KEM  
Sbjct: 10  GMNDLLPSESAKWLYFEGACRSLFERFGYHEVRTPVVESTELFARGIGEATDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR D+++   P         +  H    R     ++     FR E        R R+F
Sbjct: 70  FRDRKDRSLTMRPEMTAGCARAYIEHAVHKREPVTRWFYTGPMFRYERMQTG---RYRQF 126

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA--ESGPIGGDLSHEFIV 212
                 +F    P          +  Y ++        +      +      D    F+ 
Sbjct: 127 YQVGVEAFGSDAPSIDAEQIAMCYALYQQLGVTSLEVVVNSVGGGDDRQRYRDALLAFLT 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                     C +     P+   +   +   ++ +          A S  H + +   L 
Sbjct: 187 PQREALCGD-CQRRLDVNPLRILDCKVESCRAIVADAPNILESLGADSRAHFDAVCAQLT 245

Query: 273 ------ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                        RG++   G +F      +   + +     G+   +     G      
Sbjct: 246 AFGVEFRVDPKIVRGLDYYTGTVFEILGHSAGLGTQSTLVGGGRYDTLLERLGGPATP-- 303

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
                         +  ++       L  + +     R     +  RL   G  +  +  
Sbjct: 304 AVGFALGVERAVLSLEGEADDYQGKPLAYLASRGDEARARALALAYRLRLAGLRIEVEHR 363

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              + +QF  AD LG    + +G   ++  +V+I+    G     +L+E+      R
Sbjct: 364 AVGLKAQFKRADKLGARYVITIGEDELASGEVKIRDMKRGQESPAALDELEAALKQR 420


>gi|295132359|ref|YP_003583035.1| glycyl-tRNA synthetase [Zunongwangia profunda SM-A87]
 gi|294980374|gb|ADF50839.1| glycyl-tRNA synthetase [Zunongwangia profunda SM-A87]
          Length = 513

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 80/247 (32%), Gaps = 16/247 (6%)

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E       GE   +  K          +    D        E+  A YA  +     
Sbjct: 266 EQMEMQFFVRPGEELSWFEKWKETRQKWHASLGLGDEKYRFHDHEKL-AHYANAATDIEF 324

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                  E + + +R            ++S      +    G+++   +    IG  R+ 
Sbjct: 325 DFPFGFKELEGIHSRTDFDLKAHE---EHSGKKLRFYDPEMGENYVPYVIETSIGLDRMF 381

Query: 326 AAV---------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            AV         +        +  P  +AP K +++ +   D    +  ++I   L    
Sbjct: 382 LAVFSASLQEEDLGDGKSRTVLKLPAVLAPTKAAILPLVKKD-GLPELAQEIVEELK-WD 439

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V +D+    +G ++   D  G PL + V    + D  V +++R T  ++ + + E+ +
Sbjct: 440 FRVQYDEKDA-VGRRYRRQDAAGTPLCITVDHDSLEDKTVTVRYRDTMEQKRVPISELAS 498

Query: 437 YASHRFS 443
                 +
Sbjct: 499 IIDQEVN 505


>gi|227529956|ref|ZP_03960005.1| histidine--tRNA ligase [Lactobacillus vaginalis ATCC 49540]
 gi|227350141|gb|EEJ40432.1| histidine--tRNA ligase [Lactobacillus vaginalis ATCC 49540]
          Length = 425

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 60/428 (14%), Positives = 124/428 (28%), Gaps = 32/428 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G    LP      + V  + RE  ++ G   +  P  +  +++        D   KEM  
Sbjct: 8   GTADLLPGTTNLWEKVEKVAREVFDQFGYRGIRTPMFEDYNVFSRNVGDTSDIVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   +  +         P+  Y +   FR E        R R
Sbjct: 68  FHDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYKVYYMGPMFRYERPQSG---RQR 124

Query: 154 EFLMKDAY-SFDLTPEGSKHSYNKMFV--------SYLRIFHRLGLKSIPMRAESGPIGG 204
           EF         + +P+                   +     + LG K +        I  
Sbjct: 125 EFHQIGVEALNNESPQIDVEVIAMAMQLFKRFGVPNVKLTINTLGDKQVREDYREALINF 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              H   + +D+ E         +D     +        S+   +++ +  Y        
Sbjct: 185 LKPHYDELSSDSQERMYRNPLRVLDSKDAGDQKIVAQAPSILDYLDEESQNYFDQVQSLL 244

Query: 265 EKL-FDSLPENKRVSARGIEVGHIFYF--------GTKYSLPMSATFKGADGKDHYVQMG 315
           ++L  D   +   V         IF          G   ++     + G   +    + G
Sbjct: 245 KELGIDYEIDTNMVRGLDYYNHTIFEIMSDSPVFGGGYTTVCAGGRYNGLINQLGGPEEG 304

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
             G G       ++               AP     +   + ++   +   KI  ++   
Sbjct: 305 GIGFGMGVERLMLLL-------QQENPEFAPQDQLDVFFASANEAGDNLAFKILNQIRDK 357

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G     D  G ++G Q   A         + G + V + + ++K+  T    D+ + + +
Sbjct: 358 GVVADKDYSGVKVGKQIKEAFRRNAKYFAVFGEREVDEGQFQLKNAATKDTVDVKIADFV 417

Query: 436 NYASHRFS 443
              +    
Sbjct: 418 AEPTKYLR 425


>gi|17545935|ref|NP_519337.1| histidyl-tRNA synthetase [Ralstonia solanacearum GMI1000]
 gi|32130128|sp|Q8Y029|SYH_RALSO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|17428230|emb|CAD14918.1| probable histidyl-trna synthetase (histidine--trna ligase)(hisrs)
           protein [Ralstonia solanacearum GMI1000]
          Length = 432

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 54/425 (12%), Positives = 101/425 (23%), Gaps = 30/425 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      ++ +  +R      G  ++  P ++   L+V   G   D   KEM  
Sbjct: 9   GMNDLLPGDAPLWEHFDNAVRSMLRAYGYQQIRTPIVEQTQLFVRGIGEVTDIVEKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMR 151
             D  +   +                     + P   +     FR E   R         
Sbjct: 69  FTDALNGEQLTMRPEGTAAAVRAVIEHNLLYDGPKRLWYTGPMFRHEKPQRGRYRQFHQV 128

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             E L       D                         L     RA            F 
Sbjct: 129 GVEALGFAGPDIDAEVILMCQRLWDDLGLVGLKLELNSLGQAEERAAHRADLIKYLEGFQ 188

Query: 212 VLADTGETQVFCSKDF--MDFPIPSENTD------FDDIISLNSIVEQWTAPYAATSDVH 263
            + D    +   +     +D   P+            D +   S            ++  
Sbjct: 189 DILDEDSKRRLYTNPLRVLDTKNPALQEMAAGAPKLIDYLGEESCAHFEGVQKLLKANNI 248

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L          +        G + ++     +     +       + G     
Sbjct: 249 PFTINPRLVRGLDYYNLTVFEWTTDKLGAQGTVAGGGRYDPLIEQIGGKPAPACGWAMGV 308

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW-- 381
                +                   + +++     QV          RL   G DV    
Sbjct: 309 ERIIELLR-----EENLAPEPQGSDVYIVHQGDEAQVQALVA---AERLRDAGLDVILHA 360

Query: 382 --DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSLEEVI 435
             +       SQF  AD  G    VI+G   V+   V+IK          ++ +  ++++
Sbjct: 361 SAEGRNGSFKSQFKRADASGAAYAVIIGDDEVASGVVQIKPLRGDPNADAQQTVPSDQLV 420

Query: 436 NYASH 440
           +    
Sbjct: 421 DRLID 425


>gi|304407553|ref|ZP_07389205.1| histidyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304343504|gb|EFM09346.1| histidyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 416

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 58/420 (13%), Positives = 115/420 (27%), Gaps = 13/420 (3%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           M  Q   G    LP   +    V +  R+   R    E+  P  ++ +L+        D 
Sbjct: 1   MAFQKPPGTQDLLPGAVERWQFVESKARDICRRFNFREIRTPIFEATELFQRGVGETTDI 60

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR ++++   P         F  +           Y I   FR E      
Sbjct: 61  VEKEMYTFTDRGNRSLTLRPEGTAGAVRAFVENKLYGEPDLTKLYYIGPMFRYERAQAG- 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+F      +              +  ++       G++       +  +      
Sbjct: 120 --RYRQFHQFGVEALGAVDPALDAEVIALGYTFYTEVGLKGVRVEINSVGTPAVRAAFRE 177

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHNEKL 267
           + +   +     + C                  +  +                  H +K+
Sbjct: 178 KLLSFLEPK-RSLLCKDCQSRIDRNPLRVLDCKVDQAHFEGAPSILESLDEECQTHFDKV 236

Query: 268 FDSLPENKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
              L +            RG++      F  K     +    G  G+ + +     G   
Sbjct: 237 KTYLSDMNIPFEINPRLVRGLDYYTHTAFEYKAEGIGAIDTVGGGGRYNGLVAEVGGPDQ 296

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
             V   +               +         + A  +       K+  +L   G  V  
Sbjct: 297 PGVGLGLGLERTVMLLEHQQTELPNATAIDAYVVALGEAAERETSKLIYQLRSSGLSVER 356

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D  G ++ +Q   AD L      I+G   ++  ++ +K   TG +  +SL+ +      +
Sbjct: 357 DYQGRKMKAQMKSADRLQARYTAILGDDELARGEIALKEMATGEQRFVSLDSLAEAIKKQ 416


>gi|282860361|ref|ZP_06269429.1| glycine--tRNA ligase [Prevotella bivia JCVIHMP010]
 gi|282586859|gb|EFB92096.1| glycine--tRNA ligase [Prevotella bivia JCVIHMP010]
          Length = 517

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 113/355 (31%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   AD + K  +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 198 FSTEMGSTADGSQKIYLRPETAQGIFVNFLNVQKTGRMKLPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           V R REF   +   F   P      +       L     LG              GD ++
Sbjct: 258 VFRMREFEQMEMQFFCQ-PGTEMKWFEYWKAHRLAWHEGLG-------------MGDDNY 303

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            F             +      P                        +     +H+   F
Sbjct: 304 RFHDHDKLAHYANAATDIEFHLPF----------------------GFKEIEGIHSRTDF 341

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D L ++++ S R I+     YF    +   +            + +              
Sbjct: 342 D-LGQHEKFSGRQIK-----YFDPDRNENYTPYVVETSIGVDRMFLTVMCHAYQEE---Q 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P+ +AP K +++ +   D    +  ++I   L          +  + I
Sbjct: 393 LENGSSRVVLKLPEPLAPIKCAVLPLVNKD-GLPEKAQEIVNDLK-FHFTTHI-EAKDSI 449

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  V V    ++D  V +++R T  +E + ++++      R S
Sbjct: 450 GKRYRRQDAIGTPFCVTVDGDTLTDGTVTLRYRDTMEQERVPIDKLREIIEDRVS 504


>gi|212690852|ref|ZP_03298980.1| hypothetical protein BACDOR_00340 [Bacteroides dorei DSM 17855]
 gi|237712657|ref|ZP_04543138.1| glycyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|237723598|ref|ZP_04554079.1| glycyl-tRNA synthetase [Bacteroides sp. D4]
 gi|265752342|ref|ZP_06088135.1| glycyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
 gi|212666581|gb|EEB27153.1| hypothetical protein BACDOR_00340 [Bacteroides dorei DSM 17855]
 gi|229438051|gb|EEO48128.1| glycyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4]
 gi|229453978|gb|EEO59699.1| glycyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|263237134|gb|EEZ22604.1| glycyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
          Length = 513

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 111/355 (31%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   AD   K  +   T + +  +           +PF   QI   FR+E+  R  
Sbjct: 198 FSTEMGSTADGAMKIYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      + K     L+    LG      R         L+H
Sbjct: 258 IFRMREFEQMEMQFFVK-PGTELEWFPKWKEIRLKWHKALGFGDDHYRFHD---HDKLAH 313

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                 D      F  K         E         L+   +             NE   
Sbjct: 314 YANAATDIEFLMPFGFK-------EVEGIHSRTNFDLSQHEKFSGKSIKYFDPELNESYT 366

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             + E      R             +   MSA +                          
Sbjct: 367 PYVIETSIGVDR------------MFLSIMSAAYTEE----------------------T 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +ES      +  P ++AP K++++ +   D    +   +I   L        +D+    I
Sbjct: 393 LESGETRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIMNDLK-FHFHCQYDEKD-SI 449

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  + V  + + D+ V +++R T  +E +++ E+ N  + + S
Sbjct: 450 GKRYRRQDAIGTPYCITVDHQTLEDNCVTLRNRDTMQQERVAISELNNIIADKVS 504


>gi|220917545|ref|YP_002492849.1| histidyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254782304|sp|B8JBF6|SYH_ANAD2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|219955399|gb|ACL65783.1| histidyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 414

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 58/418 (13%), Positives = 117/418 (27%), Gaps = 28/418 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP        + A+ RE     G  E+  P ++ A L+        D   KEM  
Sbjct: 8   GMNDVLPADVARWHEMEAVAREVFALYGYREVRTPAVEHAALFARGVGEATDIVNKEMYV 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+ ++ +   P         F     ++   P  ++ +   FR E   +    R R+F
Sbjct: 68  FEDKGEELLALRPEGTAGTVRAFI-EHGAFVEGPQKWFYMGPMFRRERPQKG---RYRQF 123

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSY--------LRIFHRLGLKSIPM------RAESGP 201
                 +F +           +   Y            + +G            +A    
Sbjct: 124 HQIGCEAFGVAEPYLDAEQIALLADYFARLGVTAELKLNSVGDAQCRPAYLADLKAYLVA 183

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             G L  +     +    +V   K     P+  +     + +                + 
Sbjct: 184 NQGALCADCKDRIERNPLRVLDCKVESCQPVLEQAPRLLERLCEPCRAHFDQVKAGLDAL 243

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               ++   L        R          G++ ++     +               G   
Sbjct: 244 GVAYRVEPRLVRGLDYYVRTAYEFTSDALGSQSAVAGGGRYDRLVETLGGPPTPGIGFAL 303

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                ++I             +V             D        ++ A L + G     
Sbjct: 304 GEERLSMILEKVGRAAPERRPAVFFVSA--------DATGALEALRLAAGLRRAGIACEL 355

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           D  G ++ +QF  A+ +G    V++G   V+  + ++K   T     ++L E+    S
Sbjct: 356 DPRGGKLKAQFKQAERVGARWAVVLGGNEVATGQAKLKDLQTREETPVALSELAARVS 413


>gi|329926776|ref|ZP_08281184.1| histidine--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328938976|gb|EGG35344.1| histidine--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 417

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 59/405 (14%), Positives = 117/405 (28%), Gaps = 13/405 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    R+   R    E+  P  +  +L+        D   KEM    D+ 
Sbjct: 16  LPGAVEKWQFIEEKARDLCRRYNYREIRTPIFEQTELFERGVGETTDIVEKEMYTFKDKG 75

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D++M   P     +   +  +           Y +   FR E        R R+F     
Sbjct: 76  DRSMTLRPEGTAGVVRAYVQNKLYGEPDVTKLYYMGPMFRYERPQAG---RYRQFHQFGV 132

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F             +  S+ +     G+K+      +  +        +   +  +  
Sbjct: 133 EVFGTADPAIDAEVIALGYSFYKELGLNGVKAEINSVGTPEVRAAYRSALLAFLEPMKDS 192

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------EN 274
           +           P    D                        H EK+   L       E 
Sbjct: 193 LCSDCQSRMERNPLRVLDCKKDQGKFGDAPSILDSLDEECSTHFEKVKGHLDAMGIEYEI 252

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                RG++      F  K     +    G  G+ + +     G     +   +      
Sbjct: 253 NPRLVRGLDYYTHTAFEFKAQGIGAIDTVGGGGRFNGLVGQIGGPDQPGIGFGIGLERIQ 312

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVC-RDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                   +++  K   + + A  +   R+  + IY  L   G     D +G ++ +Q  
Sbjct: 313 LILEHQGVNLSASKPLDVYLVALGEAAERELAKLIYD-LRSKGVSAERDYLGRKMKAQMK 371

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            AD L      I+G   ++  ++ +K   TG +  + L+ ++   
Sbjct: 372 SADRLQARYTAILGDDELARGEIALKSMETGEQRTVRLDSLVQEF 416


>gi|213028507|ref|ZP_03342954.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 73

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 37/72 (51%)

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           +   G +V  DD  E+ G  FA  +L+G P  +++G + + +  +E K+R +G +  +  
Sbjct: 1   MRAQGIEVLMDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKT 60

Query: 432 EEVINYASHRFS 443
            ++++Y      
Sbjct: 61  GDIVDYLVKAIK 72


>gi|170116654|ref|XP_001889517.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164635519|gb|EDQ99825.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 652

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 132/417 (31%), Gaps = 80/417 (19%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T +    +  R    +   +PF   QI   FR+E+ PR G++R REF M +   +
Sbjct: 215 YLRPETAQGHFLNFSRLLEFNNGKVPFASAQIGRSFRNEISPRAGLLRVREFTMAEIEHY 274

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHR----------------------------LGLKSIPM 195
               +     ++++    L +  R                            LG     +
Sbjct: 275 VDPEDKRHERFHEVRDVVLVLLDRHVQEAGSSTTSRLTVGEAVEKGVIANETLGYFIARI 334

Query: 196 RAESGPI----------GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD----- 240
                 I              +       D  + ++  +  + +    ++   +D     
Sbjct: 335 YLFLLKIGINPERLRFRQHMGNEMAHYATDCWDAEIHNATGWTECVGCADRAAYDLSVHS 394

Query: 241 --------------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK----------- 275
                         + I     V +W       +   +  L  SL E+            
Sbjct: 395 AKTGHPLVVRQALKEPILTEKEVSEWNKKNLGKTFKQDAALIQSLVESMDEPELLRIKGE 454

Query: 276 ---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                +    E G  F   T   L +         +++   +     G  R++  ++E S
Sbjct: 455 LAQGAAIIKSEDGREFQL-TPDVLTVERKTLKQSIREYTPNVIEPSFGLGRILYTLLEHS 513

Query: 333 HDGKGIIW-------PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
              +           P  VAP K+ ++ + A D+      +++ ++L K G     DD  
Sbjct: 514 FWSREQDVERGVLSLPPLVAPTKVLIVPLSARDE-FNPLVQEVSSKLRKAGVFSRVDDSN 572

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             IG ++A  D LG P  V +    V +  + ++ R T  +   S+++VI   +   
Sbjct: 573 TSIGKRYARNDELGTPFGVTLDFASVQNRTMTLRERDTMDQRIGSIDDVIATVTELV 629



 Score = 44.0 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAI-EMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     N+ A  R+       + E+    +  A ++  SG    +   M++
Sbjct: 38  AGLYDYGPPGSSLQANLIAEWRKHFIIEEHMLELDTTIMTPAPVFETSGHVARFADWMVK 97

Query: 96  LADRND 101
                D
Sbjct: 98  DTKTGD 103


>gi|11465814|ref|NP_053958.1| histidine-tRNA synthetase [Porphyra purpurea]
 gi|1711633|sp|P51348|SYH_PORPU RecName: Full=Histidyl-tRNA synthetase, chloroplastic; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|1276814|gb|AAC08234.1| histidine tRNA synthetase [Porphyra purpurea]
          Length = 430

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 60/415 (14%), Positives = 116/415 (27%), Gaps = 14/415 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP  Q     ++  +          E+  P  +++DL+        D   KEM R  DR+
Sbjct: 14  LPDEQLYWQFIHEKVASLLKYANYKEIKTPIFENSDLYDRGIGENTDIVNKEMYRFNDRS 73

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++ +   P     +   F  +    +N     +     FR E        +  +  ++  
Sbjct: 74  NRDITLRPEGTAGVVRAFIENRMDVQNRLQKLWYSGPMFRYERPQSGRQRQFHQLGIEFI 133

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
            S D   +           + L +       +   +AE          E++      +  
Sbjct: 134 GSSDARADAEIIHLAMNIFNDLSVNDLQLDINSIGKAEDRNHYQAKLQEYLEQY-YDDLD 192

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
                     PI   +T      ++ +   + +   +  S+ H + + D L         
Sbjct: 193 TDSQNRLSSNPIRILDTKNKYTQTILNDSPRISDFLSLESEKHFDDVCDYL--TLLNVPY 250

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI------GAMRVVAAVIESSHD 334
            I    +                 + G+D     G Y        G              
Sbjct: 251 KINTQLVRGLDYYNDTAFEIKILKSQGQDTLCGGGRYDSLIHQLGGNKTPAVGCAIGLER 310

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
              +   + + P       I +     R     I   L         D      G Q   
Sbjct: 311 LLLVAKDNILLPHMSIDCYIVSKGIKARKIGIIITQFLRNQLVKTELDISSSNFGKQLKQ 370

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---INYASHRFSNNR 446
           A        +I+G   +    + IK   T  +E+MS+ E    I+Y   + + N+
Sbjct: 371 AHKKRAIACLILGDNEIQQETITIKWMYTQEQENMSIIEFKNKISYLKKKIAFNK 425


>gi|332656319|ref|YP_004301621.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
 gi|332656357|ref|YP_004301657.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
 gi|332656384|ref|YP_004306076.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
 gi|332656403|ref|YP_004306094.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
 gi|326324632|dbj|BAJ84459.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
 gi|326324662|dbj|BAJ84488.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
 gi|326324700|dbj|BAJ84524.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
 gi|326324719|dbj|BAJ84542.1| histidyl-tRNA synthetase [Tetragenococcus halophilus]
          Length = 428

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 59/416 (14%), Positives = 120/416 (28%), Gaps = 22/416 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G    LP   +    V  I R+  N+ G   +  P  ++ +++        D   K+M  
Sbjct: 11  GTVDILPGEIEVWQKVEKIARDTFNQFGYRGIRTPIFENYNVFARNVGDTSDIVEKQMYD 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             DR  + +   P         +  +         P+  Y +   FR E        R R
Sbjct: 71  FDDRGGRRLALRPEGTAGTVRAYVENKLFGPEYPKPYKVYYMGPMFRYERPQSG---RQR 127

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGG 204
           +F      + +                              + LG K          I  
Sbjct: 128 QFTQIGCEALNSESPQIDVEVISEALQFFKQLGINDLKLTVNTLGDKETRDAYHKALIDY 187

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              +   +  D+ E         +D    ++     +  S+   +  ++A Y        
Sbjct: 188 LKPYYDQLSDDSKERMYKNPLRVLDSKDETDQKIVANAPSILDSLSDYSAKYFEEVKKLL 247

Query: 265 EKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           +KL     E      RG++     IF      S      +    G   Y  + S   G  
Sbjct: 248 DKLNIKY-EIDSDMVRGLDYYTQTIFEI-MSDSDVFGGGYVTVCGGGRYNGLISQLGGPD 305

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVGCDVF 380
                          ++  ++         ++   + D    +   ++  ++ K G    
Sbjct: 306 EGGIGYGIGVERLLLLVQKENPDFTPKYGPDVFFASADDEGDELAFEVLDKIRKNGVSAD 365

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +    ++GSQ   A         ++G K V + K E+    +   + +S++E  +
Sbjct: 366 KNYQDVKVGSQIKEAIRRKPRYYAVIGKKEVEEGKFELSKVDSDQTQTVSVKEFED 421


>gi|167764216|ref|ZP_02436343.1| hypothetical protein BACSTE_02601 [Bacteroides stercoris ATCC
           43183]
 gi|167698332|gb|EDS14911.1| hypothetical protein BACSTE_02601 [Bacteroides stercoris ATCC
           43183]
          Length = 513

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 69/395 (17%), Positives = 128/395 (32%), Gaps = 57/395 (14%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD-SYGKEMLRLADRNDKAMIYGP 108
           L+ +  II +E       E+  P +     W E  +++  +  EM   ++   K  +   
Sbjct: 166 LEELRQIILDE-------EIVCP-ISGTKNWTEVRQFNLMFTTEMGSTSEGAMKVYLRPE 217

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   QI   FR+E+  R  + R REF   +   F   P 
Sbjct: 218 TAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFFVK-PG 276

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                +     + L+    LG      R         L+H      D      F  K   
Sbjct: 277 TELDWFKTWKETRLKWHKALGFGDDHYRYHD---HDKLAHYANAATDIEFLMPFGFK--- 330

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                 E         L+   +             NE     + E      R        
Sbjct: 331 ----EVEGIHSRTNFDLSQHEKFSGKNIKYFDPETNESYTPYVIETSIGVDR-------- 378

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                +   MSA++                          +E+      +  P ++AP K
Sbjct: 379 ----MFLSIMSASYCEE----------------------QLENGETRVVLKLPAALAPVK 412

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ +   D    +   +I   L        +D+    IG ++   D +G P  V V  
Sbjct: 413 LAVMPLVKKD-GLPEKAREIINDLK-FHFHCQYDEKD-SIGKRYRRQDAIGTPYCVTVDH 469

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + D+ V +++R T  +E +++ E+ N  + R S
Sbjct: 470 QTLEDNCVTLRNRDTMQQERVAISELNNIIADRVS 504


>gi|224541605|ref|ZP_03682144.1| hypothetical protein CATMIT_00776 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525475|gb|EEF94580.1| hypothetical protein CATMIT_00776 [Catenibacterium mitsuokai DSM
           15897]
          Length = 433

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 56/414 (13%), Positives = 124/414 (29%), Gaps = 23/414 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  ++R         EM  P  +  +L+  +     D   KEM    D+ D+++   
Sbjct: 27  WIEMEQLLRTVAANYNVKEMRTPIFEHTELFSRAVGDTTDVVTKEMYTFKDKGDRSLTLR 86

Query: 108 PTHEEVMTDIFRSHIKSYRNLP-FTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYS 162
           P     +   +               Y +   FR E       R       E L  ++  
Sbjct: 87  PEGTAGIARAYVEDKMYALPEKLQKVYYMGPMFRYERPQNGRQRQFHQFGVEMLGVESPY 146

Query: 163 FDLTPEGSKHSY------NKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLA 214
            D+       +         + +    +       +     +    P+  DL  +     
Sbjct: 147 VDVECMLMAVTIVEALGIKNIKLHINSLGDDESRTAYREALKDHFRPVLNDLCEDCQARF 206

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +    ++   K     PI           +++ + E+  A +     + ++   + + + 
Sbjct: 207 EKNPLRILDCKVDAKNPI-----MTSAPRTIDYLSEKAKAHFDKVCSLLDDLEIEYVVDT 261

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
             V         +F   +      + +  G  G+ + +     G     V  A       
Sbjct: 262 NLVRGLDYYSHTVFEIISDDPKLGAGSTVGGGGRYNGLVEELGGPATPGVGFAFGMERLM 321

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                  D      + ++ +       RD   +I   L   G     D  G  +  QF  
Sbjct: 322 LALDDEEDEENGIDVYVMPLG---DEARDLAMQIITMLRANGFTCDMDYAGRGLKGQFKS 378

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           +D  G  L +I+G   V    V I+   +  + ++ LE++++Y  + +  +   
Sbjct: 379 SDRFGAHLSIIIGEDEVKGEYVNIRCNHSKEQSEVKLEDILSYIENHYEGDHEH 432


>gi|145608852|ref|XP_369806.2| hypothetical protein MGG_06321 [Magnaporthe oryzae 70-15]
 gi|145016282|gb|EDK00772.1| hypothetical protein MGG_06321 [Magnaporthe oryzae 70-15]
          Length = 665

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 11/152 (7%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII----------WPDSVAPFKISLINI 354
            + ++    +     G  R++  ++E ++  +             +   VAP K+ ++ +
Sbjct: 493 ENTREFIPNVIEPSFGIGRILYCLLEHNYWTRASDGGDEARGVLSFTPVVAPTKVLIVPL 552

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
             HD       +KI  +L  VG     DD    IG +++  D LG PL + V  + V D 
Sbjct: 553 SRHDDFV-PFVQKISQKLRSVGVSSRVDDSSATIGRRYSRNDELGTPLGITVDFQTVKDG 611

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            + ++ R T ++     ++++       S N+
Sbjct: 612 TITLRDRDTTVQVRADQDKIVEAIQELVSGNK 643



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     N+    R+        +E+    L  AD+   SG  D +   M +
Sbjct: 39  SGLYDYGPPGCALQANIIDAWRKHFVLEDDMLEVDCSVLTPADVLKTSGHVDKFADWMCK 98

Query: 96  LADRND 101
                D
Sbjct: 99  DPKTGD 104


>gi|317490870|ref|ZP_07949306.1| histidyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920417|gb|EFV41740.1| histidyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 424

 Score = 93.3 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 50/422 (11%), Positives = 127/422 (30%), Gaps = 23/422 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        + A +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPEDTALWQPIEAALKQVLTSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FDDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E    +    D         + +            + +G            +      +
Sbjct: 130 AEVFGLNGPDVDAELILLTARWWRALGISEHVSLELNSIGSLEARANYRDALVAYLEQFK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D   L+  +++ +   +A    + ++   
Sbjct: 190 DKLDEDCKRRMYSNPLRVLDSKNPEVQALLNDAPRLSEYLDEESREHFAGLCQLLDDAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G + ++     + G   +       + G     
Sbjct: 250 AYTVNERLVRGLDYYNRTVFEWVTNSLGAQGTVCAGGRYDGLVAQLGGHATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW-- 381
               ++                P +   + + +  +  + A  ++  ++      V    
Sbjct: 310 ERLVLLV-------QAVNPDFQPQRAVDVYLISSGEGTQSAAMRLAEKIRDAYPQVKLMT 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     QFA AD  G  + +++G   ++  ++ +K+  +G ++ ++ ++V    +  
Sbjct: 363 NYGGGNFKKQFARADKWGARIALVLGENEMNAGQINVKNLQSGDQQTIAQDDVAAILASM 422

Query: 442 FS 443
            +
Sbjct: 423 LA 424


>gi|242072850|ref|XP_002446361.1| hypothetical protein SORBIDRAFT_06g014710 [Sorghum bicolor]
 gi|241937544|gb|EES10689.1| hypothetical protein SORBIDRAFT_06g014710 [Sorghum bicolor]
          Length = 684

 Score = 93.3 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 81/283 (28%), Gaps = 12/283 (4%)

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                   +         +     +                      +HE    A+  E 
Sbjct: 382 NEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHSDKSGEKLEAHE--KFAEPREV 439

Query: 220 Q-VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV- 277
           + +  +    +  +  +      + SL ++ E       A  +   E  F      K V 
Sbjct: 440 EKLVITPSKKELGLAFKGNQKMVLESLEAMTETEALDMKAVLESKGEVEFKVCTLGKDVT 499

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + +   +I            +  + + G    +          R   A          
Sbjct: 500 IKKNMVSINIEKKKEHQRKFTPSVIEPSFGIGRIIYCLFEHCFYQR---AGKTEDEQLNV 556

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
             +P  VAP K ++  +    +      +KI   L+  G     D  G  IG ++A  D 
Sbjct: 557 FRFPPLVAPIKCTVFPLV-KLEKFEVVAKKISKALTAAGISHIIDMTGNTIGKRYARTDE 615

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +G PL + V    +    V ++ R +  +  + ++EV +    
Sbjct: 616 IGVPLAITV-DNTI---SVTVRDRDSKDQIRVEVDEVASVVKE 654



 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 1/96 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     NV A  R+      G +E+  P +    +   SG  D +   M++
Sbjct: 91  AGLYDYGPPGCAVKANVLAFWRQHFVLEEGMLEVDCPCVTPEVVLKASGHVDKFTDLMVK 150

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
                +         +     + + H  S   +   
Sbjct: 151 DEKTGNCYRADHLLKDFCKDKLEKDHTLSPEMVQEY 186


>gi|258515495|ref|YP_003191717.1| histidyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779200|gb|ACV63094.1| histidyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
          Length = 419

 Score = 93.3 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 64/408 (15%), Positives = 121/408 (29%), Gaps = 23/408 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              + ++I++  +  G  E+  P  +  DL++       D   KEM    DR ++++   
Sbjct: 20  WQYIESVIKQLCHEYGFAELRTPVFEHTDLFIRGVGETTDIVEKEMYTFTDRGERSITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         +  +       P   Y     FR +        R R+F       F    
Sbjct: 80  PEGTASAVRAYLENKLYAGVQPVKLYYTGPMFRYDRPQAG---RFRQFHQFGVEVFGSDE 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCSK 225
                         +  + RLGLK + +R  S   P    +  E +      +    C+ 
Sbjct: 137 PAVDAEV---IAMAMDFYTRLGLKDLELRINSVGCPDCRPVLREKLQAFFKPKLNELCAN 193

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS------- 278
               +          D  +    +    AP        N     SL +            
Sbjct: 194 CQGRYNRNPLRIL--DCKNTGCRLLGAGAPVTLDCLCENCAKHFSLVKKYLSLLDISFTV 251

Query: 279 ----ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                RG++      F        + +  G  G+ + +     G  A  +  AV      
Sbjct: 252 DSSLVRGLDYYTHTAFEVMARDIGAQSSIGGGGRYNGLIEECGGAPAPGIGYAVGLERVL 311

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                            + + A      +   K+   L + G     D +G  + +Q   
Sbjct: 312 LIAEKQGIVFPAALGPEVFVAAAGAGTEETAFKVLFNLRRTGLSADKDYLGRSLKAQMKH 371

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           A  L     VI+G   +++  + +K  L G +E + ++ V  Y  +  
Sbjct: 372 AGKLAARFTVIIGESELAEGLLLVKDMLAGKQEKVPVQAVAEYIKNSL 419


>gi|300312256|ref|YP_003776348.1| histidyl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
 gi|300075041|gb|ADJ64440.1| histidyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score = 93.3 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 60/436 (13%), Positives = 117/436 (26%), Gaps = 45/436 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +     ++      G  ++  P ++   L+    G   D   KEM  
Sbjct: 15  GMNDILPADAPLWELFENTVQSVLKSYGFQQIRTPIVEPTALFARGLGEVTDIVEKEMYS 74

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + +   FR E   R    R R+F
Sbjct: 75  FTDSMNGDNLTLRPENTAGVVRAALEHNLTYDGPKRLWYVGPMFRHERPQRG---RYRQF 131

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------------GPIG 203
               A +   +          M       +  LGL  I +   S              I 
Sbjct: 132 HQVGAEAVGFSGPDIDAELIMMCQRL---WDDLGLSDIRLELNSIGNAEERNKHRADLIA 188

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI-ISLNSIVEQWTAPYAA--TS 260
               H+ ++  D            +D   P+     +     L+ + E+  A +      
Sbjct: 189 YFEQHKDLLDTDAQRRLHANPLRILDTKNPAMQEMVNAAPKLLDYLGEESRAHFEGVQKI 248

Query: 261 DVHN---EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             HN     +   L        R +        G++ ++          G  +   +  +
Sbjct: 249 LRHNNIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCG--------GGRYDPLIEMF 300

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G          +      + +             + +    +  +     +  RL   G 
Sbjct: 301 GGKPTPACGFAMGVERLLELMKASGEQYAPNQCDVYLVHQGEDAQLQSFVLAERLRTAGL 360

Query: 378 DVFWD----DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-------IR 426
           DV       + G    +Q   AD  G    VI+G   +      +KH   G        +
Sbjct: 361 DVVLHCASSNGGGSFKAQMKRADASGAAFAVIIGEDELKGGTATVKHMREGNAEEGRANQ 420

Query: 427 EDMSLEEVINYASHRF 442
             +  + V++Y   + 
Sbjct: 421 NSLPFDGVVDYIVEQI 436


>gi|11498521|ref|NP_069749.1| glycyl-tRNA synthetase [Archaeoglobus fulgidus DSM 4304]
 gi|3334354|sp|O29346|SYG_ARCFU RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|2649683|gb|AAB90321.1| glycyl-tRNA synthetase (glyS) [Archaeoglobus fulgidus DSM 4304]
          Length = 570

 Score = 93.3 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 8/149 (5%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA-PFKISLINIKA------HDQ 359
           G+     +     G  R+  +V+E + D   +   +      K  +  I+         +
Sbjct: 413 GEKVIPHVIEPSFGLDRITYSVLEHAFDKDVVDGEERRVLRLKRWVSPIEVAVLPLLSRE 472

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  +I   L + G    +DD G  IG ++   D +G P  V V  +   D  V I+
Sbjct: 473 PFESKGMEIVQMLREEGIFTDYDDSG-SIGRRYRRFDEIGTPFCVTVDHQTFEDETVTIR 531

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRPV 448
            R T  +  + L E+ +       + + +
Sbjct: 532 DRDTTAQVRVKLGELPSILKELLRSEKDI 560



 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/382 (12%), Positives = 100/382 (26%), Gaps = 26/382 (6%)

Query: 24  KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQS 76
           ++++R G + Q         G   + PLG      +  I R+       A E+  PT+  
Sbjct: 8   EMLIRRGFLWQSFEIYGGMAGFIDYAPLGNNLRRKIENIWRKYFVINERAAEIDTPTIGI 67

Query: 77  ADLWVESGRYDSYGK-----EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
            ++++ SG   S+       E      R D  +      E   T      +    +L   
Sbjct: 68  EEVFIASGHATSFTDVAIECENCGRVYRADHYVKEKLGIEVDETVEAVKEVMEVYDLKCE 127

Query: 132 FY-----QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
                     +          G  +      + A    +  +   + + +     +    
Sbjct: 128 CGGRFKDPAPMNLMFSTTIGPGKGKKGYLRPETAQGMFVDFKRLANFFREKLPFGVAQIG 187

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFMDFPIPSENTDFDDIISL 245
           R     I  R     +      E       GE +    S    D     +  D    I+L
Sbjct: 188 RAYRNEISPRQGVIRLREFNQAELEFFVHPGEKKHPHFSLYAKDVVKLVDKFDSQHEITL 247

Query: 246 NSIVEQWTAPYAATSDVHNEK----LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
              VE+        +    +     L   + + K    +  +V    Y    +     A 
Sbjct: 248 EEAVEKGIIANQILAYFIGKTRRFLLEIGIKDEKLRFRQHKDVERAHYATDCWD----AE 303

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              + G    V +       ++  +                     +  +  +       
Sbjct: 304 VLTSYGWIEVVGIADRTNYDLKRHSKFSGEDLSVFVPYEEPVKVKRRKIVPILSKLGPEF 363

Query: 362 RDACEKIYARLSKVGCDVFWDD 383
           R   +K+   L  +  +   D+
Sbjct: 364 RQKAKKVAEALEALNVEADLDE 385


>gi|148992030|ref|ZP_01821804.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|149011982|ref|ZP_01833130.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|149020031|ref|ZP_01835005.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168489187|ref|ZP_02713386.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|147763937|gb|EDK70870.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|147929079|gb|EDK80090.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|147930709|gb|EDK81690.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|183572296|gb|EDT92824.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|332071558|gb|EGI82051.1| histidyl-tRNA synthetase [Streptococcus pneumoniae GA17570]
          Length = 429

 Score = 93.3 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 119/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIVMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFATKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|289167022|ref|YP_003445289.1| histidyl-tRNA synthetase [Streptococcus mitis B6]
 gi|288906587|emb|CBJ21420.1| histidyl-tRNA synthetase [Streptococcus mitis B6]
          Length = 429

 Score = 93.3 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 119/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVSYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLEAISQNFSEIFEK 423


>gi|187924517|ref|YP_001896159.1| histidyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
 gi|229558663|sp|B2SXS9|SYH_BURPP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|187715711|gb|ACD16935.1| histidyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
          Length = 446

 Score = 93.3 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 62/424 (14%), Positives = 115/424 (27%), Gaps = 25/424 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +     ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQEAGLWEFFETTVKSMLRSYGYQNIRTPIVEHTQLFKRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FTDALNGENLTMRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M          +G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLMGIKLEINSLGLAEERAAHRVELIAHLE 192

Query: 216 TGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                +     +     P+   +T    +  +     +        S  H E L   L  
Sbjct: 193 KHMDVLDEEAKRRLYTNPLRVLDTKNPAMQEVAQNAPKLIDFLGEESRAHFEGLQRILKA 252

Query: 274 NKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           N           RG++  ++  F       + A    A G  +   +   G         
Sbjct: 253 NNIPFTINPRLVRGLDYYNLTVFEWVTDK-LGAQGTVAAGGRYDPLIEQLGGKPTAACGW 311

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW----DD 383
            +      + +     V   +   + +       R+    I  RL   G DV      D 
Sbjct: 312 AMGIERILELLKEEQLVPEDEGCDVYVVHQGDAAREQAFIIAERLRDTGLDVILHCSADG 371

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT------GIREDMSLEEVIN 436
                 SQ   AD  G    V++G   +++  V +K  R T        ++++  E++  
Sbjct: 372 QTASFKSQMKRADASGAAFAVVLGEDEIANGTVGVKPLRDTNANGGKNEQQNVPAEDLTE 431

Query: 437 YASH 440
           +  +
Sbjct: 432 FLIN 435


>gi|33635755|emb|CAE22080.1| Histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313]
          Length = 426

 Score = 93.3 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 61/394 (15%), Positives = 105/394 (26%), Gaps = 24/394 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLAD 98
             LP   +    V ++ R+   R G  E+  P L+  +L+        D  GKEM    D
Sbjct: 2   DLLPEQTRCWQAVESVARDHFRRAGLQEIRTPLLEVTELFARGIGEATDVVGKEMYTFVD 61

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           R D++    P     +      H       P  F+     FR E        R R+F   
Sbjct: 62  RGDRSCTLRPEGTASVVRAALQHGL-LSQGPQRFWYGGPMFRYERPQAG---RQRQFYQI 117

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL----- 213
                 +    S      +  + L      GL        +         E +       
Sbjct: 118 GVEYLGVGSPRSDAEVIALAWALLVDLGVQGLVLEINSLGTLQDRQKYREELVAWLEARS 177

Query: 214 ----ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
                D+ +         +D   P+      D  +L   +   +        V  E L  
Sbjct: 178 EELDDDSRKRLYTNPLRILDSKHPAIKELLQDAPTLFEALSVESKARFEEVQVDLEALQI 237

Query: 270 SLPENKRVSARGIEVGHIF------YFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGA 321
               N R+       GH          G + ++     + G              +  G 
Sbjct: 238 PFQLNPRLVRGLDYYGHTAFEITSDQLGAQATVCGGGRYDGLVEQLGGAPTPAFGWAFGM 297

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++  +  ++            A  +  L  +    +        I  +L   G  V  
Sbjct: 298 ERLMLLLEAAASINPSGSAARLRASTRPDLYVVNRG-EQAERVALVIAHQLRAAGLVVEL 356

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           D  G     QF  A        +++G       +
Sbjct: 357 DSSGAAFNKQFKRAGRSRATWALVIGDDEAERGE 390


>gi|134094492|ref|YP_001099567.1| histidine tRNA synthetase [Herminiimonas arsenicoxydans]
 gi|133738395|emb|CAL61440.1| histidine tRNA synthetase (Histidine--tRNA ligase) (HisRS)
           [Herminiimonas arsenicoxydans]
          Length = 448

 Score = 93.3 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 53/426 (12%), Positives = 108/426 (25%), Gaps = 30/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +     +       G  ++  P ++   L+    G   D   KEM  
Sbjct: 15  GMNDILPADAPLWELFENTVHTVLKSYGFQQIRTPIVEPTALFARGLGAVTDIVEKEMYS 74

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMR 151
             D  +   +                     + P   +     FR E       R     
Sbjct: 75  FTDSMNGDELTLRPECTASVVRAALEHNLTYDGPKRLWYSGPMFRHERPQRGRYRQFHQI 134

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKM--FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
             E +       D                       + +G      +  +  I     H 
Sbjct: 135 GAEAIGFSGPDIDAELIMMCQRLWDDLGLQDVRLELNSIGNAEERNKHRADLISYFEQHA 194

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDI-ISLNSIVEQWTAPYAATSDVHNE--- 265
            ++ A+  +         +D   P+     +     L+ + E   A +     + N    
Sbjct: 195 ELLDAEAQKRLHSNPLRILDTKNPAMQEMVNAAPKLLDYLGEDSRAHFEGVQKILNHNAI 254

Query: 266 --KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L        R +        G++ ++          G  +   +  +G     
Sbjct: 255 PFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVC--------GGGRYDPLVEMFGGKPTP 306

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
                +      + +             + I    +  +     +  RL   G DV    
Sbjct: 307 ACGFAMGVERLLELMKASGEKFTPNQCDVYIVHQGEPAQLQASVVAERLRDAGLDVVL-H 365

Query: 384 MGEQIG-----SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT--GIREDMSLEEVIN 436
                G     SQ   AD  G    VI+G   ++     +K      G + +++ E + +
Sbjct: 366 CAASAGIGSFKSQMKRADNSGAAYAVIIGEDEIAKGAAVVKEMRDAEGKQSEVAFEGIAD 425

Query: 437 YASHRF 442
           Y   + 
Sbjct: 426 YLVDQI 431


>gi|126179531|ref|YP_001047496.1| histidyl-tRNA synthetase [Methanoculleus marisnigri JR1]
 gi|166228583|sp|A3CVW4|SYH_METMJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|125862325|gb|ABN57514.1| histidyl-tRNA synthetase [Methanoculleus marisnigri JR1]
          Length = 410

 Score = 93.3 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 61/390 (15%), Positives = 113/390 (28%), Gaps = 27/390 (6%)

Query: 62  NRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
            R G  E+  P  +  +L+  +SG  +   +EM    D+  + M   P     +  ++ +
Sbjct: 31  RRWGYREVCTPDFEHLELFTMKSG--EGIIQEMYVFEDKGGRKMTLRPEVTAAVLRMYVN 88

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             K     P  +      FR E   +    R R+F              +      +   
Sbjct: 89  EGK-VLPKPLRWCYFADCFRYERPQKG---RYRQFWQFGVELIGADTASADAEVIMLADD 144

Query: 181 YLR-----IFHRLGLKSIPMRAESGPIGGDL---SHEFIVLADTGETQVFCSKDFMDFPI 232
            LR         +G  +      SG   GD              G   V   K+      
Sbjct: 145 TLRSTGVTFDLHVGHLAPMKHLLSGLDPGDQRAIMAYLDKHDQKGLEAVLFGKNLTHLAE 204

Query: 233 PSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
           P         +S    V       A    T  +   +  D  P+           G +F 
Sbjct: 205 PLAALGECRTVSEVFEVAGDVPERARIEETFTLLESQEIDYRPDFGIARGLDYYTGMVFE 264

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
               ++  + A  +   G  + +     G        A+           +  +  P   
Sbjct: 265 G---FAKNLGAENQILGGGTYRLAHLFGGDDVASCGFAIGFDRVMVSIGDFELAHEPVVG 321

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            +          R    ++     + G     D M   +G+Q + A         ++G +
Sbjct: 322 VVCT-----PEGRARALEVARAFREAGVRAEADLMQRGMGAQVSHAAKT-ADFAAVLGKR 375

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            V    V +K+  +G +++ SLEE I   +
Sbjct: 376 EVEAGTVTLKNLHSGEQQERSLEEAIAEVA 405


>gi|85059737|ref|YP_455439.1| histidyl-tRNA synthetase [Sodalis glossinidius str. 'morsitans']
 gi|123725388|sp|Q2NS41|SYH_SODGM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|84780257|dbj|BAE75034.1| histidyl-tRNA synthase [Sodalis glossinidius str. 'morsitans']
          Length = 424

 Score = 93.3 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 66/424 (15%), Positives = 127/424 (29%), Gaps = 29/424 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        V   ++      G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPEETAFWQCVEGTLKNVLASYGYSEIRLPIVEQTPLFQRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF---RDELRPRFGVMRS 152
            ADRN  ++   P            H   Y      +Y   +       + R R      
Sbjct: 70  FADRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYVGPMFRYERPQKGRYRQFHQMG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E   +     D         + +            + +G      R     +     HE
Sbjct: 130 AEVFGQQGPDVDAELILLTARWWRALGIQEHVALELNSIGSLEACARYREALVAFLRQHE 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHN---- 264
             +  D            +D   P      +D   L   ++    A ++   ++ +    
Sbjct: 190 DRLDEDCRRRMHTNPMRVLDTKNPDIQVLLNDAPVLTDYLDDDSQAHFSGLCELLDLAGI 249

Query: 265 -EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGA 321
              +   L        R +        G++ ++     + G              + +G 
Sbjct: 250 PYTVNPRLVRGLDYYNRTVFEWVTTRLGSQGTVCGGGRYDGLVEQLGGRATPAVGFAMGL 309

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCD 378
            R+V  V   + D       D+          + A D V R+A    E++   LS +   
Sbjct: 310 ERLVLLVQAVNPDFAAAARVDAYL--------VAAGDGVQREALRLAEQLRDELSSLRLM 361

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +   G     QF  AD  G  + +++G    +  +V +K   TG +E ++  +V    
Sbjct: 362 TNY--GGGSFKKQFGRADKHGARIALVLGESEAAAGQVVVKDLATGNQETLAQSDVAARL 419

Query: 439 SHRF 442
           +   
Sbjct: 420 ASIL 423


>gi|148545053|ref|YP_001272423.1| histidyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|184154386|ref|YP_001842727.1| histidyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227364203|ref|ZP_03848299.1| histidyl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|325683406|ref|ZP_08162922.1| histidine--tRNA ligase [Lactobacillus reuteri MM4-1A]
 gi|148532087|gb|ABQ84086.1| histidyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|183225730|dbj|BAG26247.1| histidyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227070748|gb|EEI09075.1| histidyl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|324977756|gb|EGC14707.1| histidine--tRNA ligase [Lactobacillus reuteri MM4-1A]
          Length = 425

 Score = 93.3 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 60/414 (14%), Positives = 121/414 (29%), Gaps = 18/414 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G    LP      + V    RE  N+ G   +  P  +   ++        D   KEM  
Sbjct: 8   GTADILPGTTSIWEKVEQNAREVFNQFGYRGIRTPMFEDYHVFSRNVGDTSDIVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   +  +         P+  Y +   FR E        R R
Sbjct: 68  FHDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYKVYYMGPMFRYERPQSG---RQR 124

Query: 154 EFLMKDAY-SFDLTPEGSKHSYNKMFV--------SYLRIFHRLGLKSIPMRAESGPIGG 204
           EF         + +P+      +            +   + + LG K +        I  
Sbjct: 125 EFHQIGVEALNNESPQIDVEVISMAMALFKKFGVPNVKLVINTLGDKKVREDYREALINY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              H   +  D+ E         +D     +     +  S+   +++ +  Y        
Sbjct: 185 LKPHYDELSKDSQERLYKNPLRVLDSKDEGDKKIVAEAPSILDYLDEESQAYFDEVQALL 244

Query: 265 EKL-FDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            KL  D   +   V         IF             T   A G+ + +     G    
Sbjct: 245 NKLGIDFEIDTNMVRGLDYYNHTIFEIMSDSPVFGGGYTTVCAGGRYNGLISQLGGPEEG 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            +   +              + AP     +   + DQ   +   ++ +++ + G     D
Sbjct: 305 GIGFGMGVERLMLLLQEENPAFAPQDQLDVFFASADQQGDEMAFEVLSKIRQQGIVADKD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             G ++G Q   A         + G++ V +   ++K+  T     + + + + 
Sbjct: 365 YSGVKVGKQIKEAFRRNAKYFAVFGAREVEEGTFQLKNAATKDATTIKVSDFVA 418


>gi|302815693|ref|XP_002989527.1| hypothetical protein SELMODRAFT_269525 [Selaginella moellendorffii]
 gi|300142705|gb|EFJ09403.1| hypothetical protein SELMODRAFT_269525 [Selaginella moellendorffii]
          Length = 597

 Score = 93.3 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 11/147 (7%)

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-------GIIWPDSVAPFKISLIN 353
                  +     +     G  R++  + E   D +        +    ++       + 
Sbjct: 426 QVTKKSKEKFTPSVIEPSFGIGRIIYCLFEHCFDTRGGVDGQLNVFRFPALVAPVKCTVF 485

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
               +    +    I A+L + G     D  G  IG ++A  D +G P  + V S    D
Sbjct: 486 PLVQNPKLDEIARAISAKLREAGIANKIDTTGRSIGRRYARTDEIGVPFAITVDS---ED 542

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASH 440
             V ++ R +  +  + LEEV++  + 
Sbjct: 543 G-VTVRDRDSKDQIRVPLEEVVDLIAD 568


>gi|320539277|ref|ZP_08038947.1| histidyl tRNA synthetase [Serratia symbiotica str. Tucson]
 gi|320030669|gb|EFW12678.1| histidyl tRNA synthetase [Serratia symbiotica str. Tucson]
          Length = 424

 Score = 93.3 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 66/427 (15%), Positives = 132/427 (30%), Gaps = 33/427 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++  +  G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPKDTALWQRIEGTLKKVLDGYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FDDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHS----YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
               A  F L              + + +     H     +     E+     +    F+
Sbjct: 126 HQLGAEVFGLHGPDIDAELILLTARWWKALGIAEHVKLELNSIGSLEARANYRNALVGFL 185

Query: 212 VLA------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHN 264
                    D            +D   P      +D   L+  +++ + A +    ++  
Sbjct: 186 EQHVDVLDEDCKRRMYRNPLRVLDSKNPEVQALLNDAPRLSEYLDEASCAHFTGLCELLA 245

Query: 265 EK-----LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
           +      + + L        R +        G + ++     +           V    +
Sbjct: 246 QAGIPYTINECLVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDSLVEQLGGRAVPAVGF 305

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVG 376
            +G  R+V  V   + D        +     + LI+  A  Q       E++   L ++ 
Sbjct: 306 AMGLERLVLLVQALNPDFT------APPTIDVYLISSGAGAQSAAMQLAERVRDALPQLK 359

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               +   G     Q   AD  G  + +I+G   V+  +V +K   +G +E ++  E   
Sbjct: 360 LMTNY--GGGNFKKQITRADKWGACVALILGENEVAAQQVVVKDLRSGEQETLAQSETAA 417

Query: 437 YASHRFS 443
             +   S
Sbjct: 418 RLAQMLS 424


>gi|183222581|ref|YP_001840577.1| histidyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189912616|ref|YP_001964171.1| histidyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|229558692|sp|B0SH39|SYH_LEPBA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558693|sp|B0SQQ4|SYH_LEPBP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|167777292|gb|ABZ95593.1| Histidine--tRNA ligase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167781003|gb|ABZ99301.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase; HisRS)
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 437

 Score = 93.3 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 64/437 (14%), Positives = 130/437 (29%), Gaps = 42/437 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   + P   +  + + +++++     G  E   P ++S DL+      +  GK++    
Sbjct: 13  GTRDFYPEDMRLRNYLFSVMKDVVRSYGYEEYDGPMVESLDLYRAKTGEEIVGKQIYNFI 72

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D+ D+ +   P     +  +    ++     P  ++ I   +R E     G  R RE   
Sbjct: 73  DKGDREVAIRPEMTPTVARMVAKKLRELPR-PIRWFSIPNLWRYEQP---GHGRLREHWQ 128

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS----------IPMRAESGPIGGDLS 207
            +   F +T   ++     +    L  F                      +   +  + +
Sbjct: 129 LNVDMFGVTSSRAELEILSLACDILFAFGAPKNSFKVTISHRSLLDEFLLDGLKVSPNQA 188

Query: 208 HEFIVLADTG------ETQVFCSKDFMDFPIPSENTDFDDIISLN-------SIVEQWTA 254
           HE   + D        E     +K   +        D     ++N          E   A
Sbjct: 189 HEVSKILDKKNKITQDEYVALVTKTIPNDSSAVSKIDLFLNATVNSLNQIPGIKEETLAA 248

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF-------GTKYSLPMSATFKGADG 307
                 D+    L D +  +  V  RG +    F F         K SL     +    G
Sbjct: 249 IKGLFEDIKTIGLSDIIHFDPSV-VRGFDYYTGFIFEIFDTSPQNKRSLYGGGRYDNLIG 307

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                ++   G G   V      ++H         + A      I +        +    
Sbjct: 308 LFSNEELTGIGFGLGDVTLQNFLTAH-----NLLPNFASDTTVFIPLLDDSSFAEN--HN 360

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
               L K         + +++G Q + A+  G+   ++ G   +  + V +K   +  + 
Sbjct: 361 FAKELRKEKISAEVSLVSQKMGKQLSYAEKKGYRWILLRGEDEIKTNTVTLKDMASRNQF 420

Query: 428 DMSLEEVINYASHRFSN 444
             S  E +       S 
Sbjct: 421 TFSFSEALQKIKEELSK 437


>gi|194246698|ref|YP_002004337.1| glycyl-tRNA synthetase [Candidatus Phytoplasma mali]
 gi|193807055|emb|CAP18491.1| Glycyl-tRNA synthetase, class II [Candidatus Phytoplasma mali]
          Length = 452

 Score = 93.3 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/430 (11%), Positives = 132/430 (30%), Gaps = 37/430 (8%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSV--PTLQSADLWVESGRYDSYGKEMLRLA 97
           + +  LG     N+     ++  +     +      L +  +W  S     +   ++   
Sbjct: 31  FDYGHLGSLLKQNIKKAWLKKFIQEQENNILFDSAILLNPQVWEASEHVSHFSDPLIENK 90

Query: 98  DRNDKAMIYGPTHEE--------VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           D N +       ++            +  + +I  ++ L    +     F    +   GV
Sbjct: 91  DDNKRYRADKLINQNDYKLNISGWSFEQMQKYIIDHKLLGTRNWSSVKNFNMLFQTYQGV 150

Query: 150 MRSRE-------FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           +  +           +  +        +        V  +    R  +        +   
Sbjct: 151 VEEKSKKVYLRPETAQGIFINFKNILKTARKKIPFGVGQIGKSFRNEITPGNFIFRTCEF 210

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                  F       +  ++  K   DF +          + L   + +  + Y+  +  
Sbjct: 211 EQMELEFFCEPGTQKKWFLYWKKYVNDFLL--SLGINSKNLMLKDYLPEDLSHYSDFTTD 268

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGA 321
                     E   +++R           +K     + T+     K  Y   +    +G 
Sbjct: 269 VLFNFPWGFSELWGIASRRDFDLKKHQQFSKQ----NLTYLDEKNKKKYLPFVIEPSVGV 324

Query: 322 MRVVAAVIESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            R+  A + + ++          + +     +APFK +++ +           +KIY  L
Sbjct: 325 ERLFLAFLFNCYEEEKLNIKDTRQVLKIHPFLAPFKAAILPLNKK--EHSSKAKKIYKDL 382

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             +  +V +++  + IG ++   D++G P  + +  +   D    I++R    +  + ++
Sbjct: 383 M-LYFEVCYEE-NQSIGKRYRKHDMIGTPFCITIDCQTFVDETCTIRNRDNLKQHRIFIK 440

Query: 433 EVINYASHRF 442
           ++  Y  ++ 
Sbjct: 441 DIKKYLENKL 450


>gi|255526675|ref|ZP_05393580.1| histidyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296187180|ref|ZP_06855577.1| histidyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255509655|gb|EET85990.1| histidyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296048215|gb|EFG87652.1| histidyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 415

 Score = 93.3 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/403 (12%), Positives = 109/403 (27%), Gaps = 5/403 (1%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLAD 98
             LP        V    RE   + G  E+  P  +  +L+        D   KEM    D
Sbjct: 11  DMLPKDAYKWHYVENKFRELSEQYGIKEIRTPMFEHTELFTRGVGETTDVVQKEMYTFED 70

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           +  +++   P         F          P   Y     FR E   +  + +  ++ ++
Sbjct: 71  KGGRSITLKPEGTAPSVRAFIESSLYNEAQPTKLYYFIPAFRYENVQKGRLRQFHQYGVE 130

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
              S + + +    S     +  L + +     +     +      D    F+      +
Sbjct: 131 IFGSQEASIDAEGISIAMRALDELGLKNLSLNINSLGCPDCRKKFNDALKSFLKEN-YDD 189

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
               C   F   P+   +   +    +                 H E+L   L       
Sbjct: 190 LCPTCKSRFERNPMRILDCKEEKCKKIAKNAPTILDYICDDCKNHFEELKKYLDAIGIKY 249

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                +     + TK    +        G   Y ++     G                  
Sbjct: 250 TIDPYIVRGLDYYTKTVFEIIYKDLTVCGGGRYDKLIEELGGPDMPAFGFAAGLERLIMT 309

Query: 339 IWPD--SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
           +  +   +       + + A     +    KI   L   G     D M   + +    A+
Sbjct: 310 LESEGIEIPRSDYVDLYVGAMGDDAKIEAFKIVNALRAKGLKCDSDHMNRSVKASMKYAN 369

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             G    V++G   +     ++K    G + ++ L+++ +   
Sbjct: 370 KTGARFTVVLGENELQAGTAKLKRMEDGQQFEVDLKDLDSIVK 412


>gi|325989371|ref|YP_004249070.1| prolyl-tRNA synthetase [Mycoplasma suis KI3806]
 gi|323574456|emb|CBZ40106.1| Prolyl-tRNA synthetase [Mycoplasma suis]
          Length = 463

 Score = 93.3 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 60/404 (14%), Positives = 124/404 (30%), Gaps = 59/404 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G +   P G    + + + +  E ++ G   +  P L     + E              
Sbjct: 23  SGTFFLHPRGCFIWEQIQSFLNAEFSKLGVSNVLFPALLPFQKFQE-------------- 68

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               ++        EE+M        +S   L                P   ++ S  F 
Sbjct: 69  ----EQKNSETLNLEEIMRLHNSKSEQSVVALR---------------PTSEILFSHYFR 109

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +        P       +               +       S         +F +    
Sbjct: 110 ERLKERDIKLPFLLNQWSSVYREERNTKLFFRSKEFYWQELHSLHENQKDL-DFHLEKIH 168

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +    +      I  E T  +                 A   + NE +   LP+ + 
Sbjct: 169 EIYKKLLRELLCIEYITGEKTILER-------------FPGAQKTLTNECI---LPDGQ- 211

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                +++         +S  M   + GA+  +      S G  + R++ A++E   D  
Sbjct: 212 ----SLQLTTTHDLSNFFSKLMDIKYWGANDIEMTPLQLSAGS-STRLIGALVEMHKDSV 266

Query: 337 GIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           G+I P +++   I+++ +  + D+        I  +L      +  DD     G +    
Sbjct: 267 GVILPWNLSKENIAILLLGENRDEETISYISSIREKLC--NYRLHIDDSYSSFGKKINKV 324

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           + LG P+ +I+G + + + K+ IK RL+  + +  L  + N  S
Sbjct: 325 ERLGIPVSLIIGQQEIKNKKITIKSRLSESKYECDLSNLENEIS 368


>gi|220935216|ref|YP_002514115.1| Histidine--tRNA ligase [Thioalkalivibrio sp. HL-EbGR7]
 gi|254782353|sp|B8GTN4|SYH_THISH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|219996526|gb|ACL73128.1| Histidine--tRNA ligase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 424

 Score = 93.3 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 56/426 (13%), Positives = 119/426 (27%), Gaps = 33/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G++  LP    A   + A  RE     G  E+ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GMHDVLPADTPAWQWLEAAARELLAGYGYEEIRMPIVEQTELFARSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   +       + +   FR E   +    R R+F
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLHNQ-QQRLWYMGPMFRHERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKH---------SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
                 +F +                             + LG         +  +    
Sbjct: 126 HQIGVETFGMDGPDIDAELIILTARLWRVLGLKDVRLEINSLGSTEARAAYRALLVQHFE 185

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ------WTAPYAATS 260
           +H  ++  D            +D   P+         SL   +++             T+
Sbjct: 186 AHAEVLDEDARRRLHSNPLRILDSKNPAMREVIRSAPSLLDHLDEASRAHFEGLKALLTA 245

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 +  +L        R +        G + ++     + G   +       + G  
Sbjct: 246 AGIEFTVNPALVRGLDYYCRTVFEWITESLGAQGTVCAGGRYDGLVEQLGGRATPAAGFA 305

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCD 378
                   +  +   +                 +    +  +    ++   L     G  
Sbjct: 306 MGLERLLALVEAGGARPPAPKPHAY--------LALAGEGTQAEGLRLAESLRDALPGLR 357

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGIREDMSLEEVIN 436
           +  +  G    +Q   AD  G  L +I+G   +++  + +K      G ++ +  + +  
Sbjct: 358 LVVNGGGGGFKAQIKRADRSGADLALIIGESELAEGTILVKPLREAGGEQQAVPRDGLAE 417

Query: 437 YASHRF 442
           +   R 
Sbjct: 418 FLRARI 423


>gi|324991954|gb|EGC23877.1| histidine--tRNA ligase [Streptococcus sanguinis SK405]
 gi|324996153|gb|EGC28063.1| histidine--tRNA ligase [Streptococcus sanguinis SK678]
 gi|332363514|gb|EGJ41295.1| histidine--tRNA ligase [Streptococcus sanguinis SK1059]
          Length = 426

 Score = 93.3 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 58/402 (14%), Positives = 116/402 (28%), Gaps = 25/402 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
           +   +     +M     + F  +G+ ++ +   S       +                  
Sbjct: 137 SNPATD---VEMIAMAAQFFKDIGITNVSLELNSLGNPESRAAYRQALIDYLTPLKPSLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D   P +    +   S+   +++ ++ Y A      E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESSAYFAAVRSMLETLQIPYVI 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               V         IF F T+ +         A G+   +     G     V   +    
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLT--ICAGGRYDGLVAYFGGPETPGVGFGMGLER 311

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      +       + +            ++   L   G     D +  ++ +QF
Sbjct: 312 LLLVLDKQGVELPIETALDVYVAVLGAGANGRALELVQALRAQGFAAERDYLDRKLKAQF 371

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             AD+      + +G   V   +V +K+        +SL+++
Sbjct: 372 KSADIFKAKTLITLGESEVESGQVTVKNNHNREEITVSLDQI 413


>gi|88602298|ref|YP_502476.1| threonyl-tRNA synthetase [Methanospirillum hungatei JF-1]
 gi|121729157|sp|Q2FPK3|SYT_METHJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|88187760|gb|ABD40757.1| Ser-tRNA(Thr) hydrolase [Methanospirillum hungatei JF-1]
          Length = 610

 Score = 93.3 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 67/421 (15%), Positives = 131/421 (31%), Gaps = 55/421 (13%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS---ADLWVESGRYDSYGKEMLRLAD 98
           WLP G+   D +           GA  +  P +       ++      D +G+   R   
Sbjct: 218 WLPRGKLVRDLLADYALSLVLDYGASPVETPVMYDLADKAIFE---HADKFGERQYRFK- 273

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-FRDELRPR-FGVMRSREFL 156
             ++ M+        M    RS   S  +LP   Y++    FR E +    G+ R R F 
Sbjct: 274 SGNRNMMLRFAACFGMFTTMRSMHISPNHLPMKMYELSTYSFRHEQKGEVIGLKRLRAFT 333

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
           M D +S     E +   + +      +     G + + +   +         EF      
Sbjct: 334 MPDMHSLCKDLENALTCFEEQLAIGWKTGRDFGTQLVAVFRCT--------EEF-----Y 380

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E + +  K   D  +P       D +          A       + N  +         
Sbjct: 381 SEYEGWIKKIVKDSGVPILIETLSDRVHYWIAKIDLAAIDGQNRPIENPTV--------- 431

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHD 334
                           + S      +  ADG + Y  +          RV  A++E++ +
Sbjct: 432 ------------QIDVESSKRFGIKYHLADGTEVYPPILHCSPTGSVERVFCAILENTVN 479

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            K    P  + P ++ +I +  +        + I  +L+K       DD  + +  +   
Sbjct: 480 QKVAHLPTWLTPTQVRIIPVTDNH---LGYAKDIAEKLTKARIRADIDDRDDSLNKKIRA 536

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-----REDMSLEEVINYASHRFSNN--RP 447
           A +      ++VG   ++   + +  R         +   + E++I       S    RP
Sbjct: 537 AGMDWVSYVIVVGDSEMNSGNLTVTVRSESEPNKPQKITCTAEKLIEMIGKETSGKPFRP 596

Query: 448 V 448
           +
Sbjct: 597 L 597


>gi|284048847|ref|YP_003399186.1| histidyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
 gi|283953068|gb|ADB47871.1| histidyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
          Length = 417

 Score = 93.3 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 61/404 (15%), Positives = 116/404 (28%), Gaps = 19/404 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
                 IIRE        E+  P  +  +L+        D   KEM    DR+ +++   
Sbjct: 20  WRYAEQIIREVCREFNYQEIRTPIFEHTELFQRGIGDGTDVVDKEMYTFTDRSGRSLTLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P +   +   F  +      +P   + I   FR +        R R+F      +     
Sbjct: 80  PENTASVVRSFVENKLYAEPMPLKVFYIGPMFRYDRPQAG---RMRQFHQFGVEALGAES 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT-----GETQVF 222
                      +  L +  R GLK + ++  S            +L D       E    
Sbjct: 137 PVVDAEV---ILLALTVLKRFGLKDLKLKINSVGCPNCRPQHRKLLQDYFRPHLDELCED 193

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--- 279
           C   F   P+   +   D      +   + T         H E +   L E         
Sbjct: 194 CQSRFDRSPLRILDCKVDADKPFMAGAPKITDHLCDECRAHFETVKKLLDEAGVEYEVDS 253

Query: 280 ---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F  +Y+   + +  G  G+   +     G     V  A+        
Sbjct: 254 NLVRGLDYYTKTAFEIQYAPLGAQSAVGGGGRYDGLVEELGGPSTPGVGFAIGLERILLA 313

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                      +   I     D+       ++   L   G     + +   + +Q   A+
Sbjct: 314 MEKQNLLPTGKEAVDIFAVIPDEGGVTDAFRVITNLRNKGLVCDMNLVERSMKAQMKQAN 373

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                  +I G +  S   V +++     +E++    +  Y + 
Sbjct: 374 REQARFALIFGEEERSRGAVTVRNMADSSQEEVCFGALEAYFNK 417


>gi|116753590|ref|YP_842708.1| glycyl-tRNA synthetase [Methanosaeta thermophila PT]
 gi|121693195|sp|A0B5U4|SYG_METTP RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|116665041|gb|ABK14068.1| glycyl-tRNA synthetase [Methanosaeta thermophila PT]
          Length = 577

 Score = 92.9 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 59/146 (40%), Gaps = 10/146 (6%)

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAH 357
            G+     +     G  R++  V+E S+  + +         +   ++P  ++++ +   
Sbjct: 420 RGEYVVPHVIEPSFGIDRILYTVLEHSYHEEPVEDEMRVVLRFLPGISPIDVAILPLMDK 479

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D++  +   +I+    + G    +D  G  IG ++   D +G P  + V  + + D  V 
Sbjct: 480 DELV-EPARRIFDEFRRCGMLAEFDTSG-SIGRRYRRNDEIGTPYCITVDYQTLEDGTVT 537

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ R T  +  +  +  ++      S
Sbjct: 538 VRDRDTMQQIRIEADRAVDIIRDLMS 563



 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + G Y + PLG +    +  I R       G  E+  PT+   +++  SG    +   + 
Sbjct: 27  AAGFYDYGPLGARLKRRIEDIWRRFFVIGEGFAEIECPTIGIEEVFRASGHLSGFSDPLT 86

Query: 95  RLADRND 101
              +  +
Sbjct: 87  ECKECKE 93


>gi|330835872|ref|YP_004410600.1| histidyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
 gi|329568011|gb|AEB96116.1| histidyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
          Length = 431

 Score = 92.9 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 61/417 (14%), Positives = 137/417 (32%), Gaps = 27/417 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
           +  V  I RE   + G  E   P ++  +L+   G  +   K M    D+ D+ +   P 
Sbjct: 21  IRKVETIFREVVEKAGYSEAITPVVEEFELFSVKG-GEELRKTMYVFKDKGDREVALRPE 79

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
               +  ++ + ++ +      FY  ++   DE +    + R REF              
Sbjct: 80  ITPSIVRLYLNSLQHFPKPLRIFYVGRVYRYDEPQ----LGRYREFRQAGVEVLGTESIL 135

Query: 170 SK-HSYNKMFVSYLRIFHRLGLKS-------IPMRAESGPIGGDLSHEFIVLADTGETQV 221
           ++   ++ +   Y +I  +  ++             +   I  +L    + L D G+   
Sbjct: 136 AELEMFHLLNDFYRKIGLKDNVEFKINNIGIYRKIFDYIKIDDNLQEHVLHLLDKGKINE 195

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
           F S         S+  D  +I++ N    +     A    +   +L   + +   +S   
Sbjct: 196 FYSTLERIPIQNSKIMDLLEILTKNGKSVKIEELIAYIDKIDIPELKIEIEKISLISDVL 255

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV-------------VAAV 328
             +G I Y      +   A + G   +     +     G  R                  
Sbjct: 256 SSLG-INYLIDLSFVRGLAYYTGPIFEVTKKGLPFSIAGGGRYDSLVEIYGGSKTPAIGF 314

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                     +    +    + LI +   D +      +I + L + G     ++    +
Sbjct: 315 AIGIERTVHALENILLRKEPVHLIAVITLDNLAIKKALEIASILRENGYVTTLNNKDLSL 374

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
               ++    G+   +I+G K + + KV +++  T  +  +++ E+I   +     N
Sbjct: 375 SKLISLYADQGYTHVIIIGKKELENEKVTVRNLKTREQRLVNISELIRVLNSDMQAN 431


>gi|329964612|ref|ZP_08301666.1| glycine--tRNA ligase [Bacteroides fluxus YIT 12057]
 gi|328525012|gb|EGF52064.1| glycine--tRNA ligase [Bacteroides fluxus YIT 12057]
          Length = 513

 Score = 92.9 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 112/355 (31%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   AD   K  +   T + +  +           +PF   QI   FR+E+  R  
Sbjct: 198 FSTEMGSTADGAMKIYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      +     + L+    LG      R         L+H
Sbjct: 258 IFRMREFEQMEMQFFVK-PGTELDWFKAWKETRLKWHKALGFGDDHYRYHD---HDKLAH 313

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                 D      F  K         E         L+   +             NE   
Sbjct: 314 YANAATDIEFLMPFGFK-------EVEGIHSRTNFDLSQHEKFSGKNIKYFDPETNESYT 366

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             + E      R             +   MSA++                          
Sbjct: 367 PYVIETSIGVDR------------MFLSIMSASYCEEK---------------------- 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P ++AP K++++ +   D    +   +I   L        +D+    I
Sbjct: 393 LENGETRVVLRLPAALAPVKLAVMPLVKKD-GLPEKAREIIDSLK-FHFHCQYDEKD-SI 449

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  + R S
Sbjct: 450 GKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMEQERVAISELNNIIADRVS 504


>gi|295676902|ref|YP_003605426.1| histidyl-tRNA synthetase [Burkholderia sp. CCGE1002]
 gi|295436745|gb|ADG15915.1| histidyl-tRNA synthetase [Burkholderia sp. CCGE1002]
          Length = 446

 Score = 92.9 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 63/424 (14%), Positives = 114/424 (26%), Gaps = 25/424 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +     ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQEAGLWEFFETTVKSMLRSYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FTDALNGENLTMRPENTAAVVRASIEHNMLYDGPKRLWYIGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIIMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIAYLE 192

Query: 216 TGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                +     +     P+   +T    +  +     +        S  H E L   L  
Sbjct: 193 KHMDVLDEDAKRRLYTNPLRVLDTKNPALQEVAQNAPKLIDFLGEESRAHFEGLQRLLKA 252

Query: 274 NKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           N           RG++  ++  F       + A    A G  +   +   G         
Sbjct: 253 NNLPFTINPRLVRGLDYYNLTVFEWVTDK-LGAQGTVAAGGRYDPLIEQLGGKPTAACGW 311

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW----DD 383
            +      + +     V   +   + +       R+    I  RL   G DV      D 
Sbjct: 312 AMGIERILELLKEEQLVPEDEGCDVYVVHQGDAAREQAFIIAERLRDTGLDVILHCSADG 371

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT------GIREDMSLEEVIN 436
                 SQ   AD  G    V++G   +++  V +K  R T        ++++  E++  
Sbjct: 372 QSASFKSQMKRADASGAAFAVVLGEDEIANGTVGVKPLRDTQAHGGKNEQQNVPAEDLTE 431

Query: 437 YASH 440
           Y  +
Sbjct: 432 YLIN 435


>gi|15901936|ref|NP_346540.1| histidyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|111656967|ref|ZP_01407778.1| hypothetical protein SpneT_02001796 [Streptococcus pneumoniae
           TIGR4]
 gi|32130139|sp|Q97NC9|SYH_STRPN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|14973634|gb|AAK76180.1| histidyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
          Length = 429

 Score = 92.9 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 120/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I    +       ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVTLPIENALDVYIAVLGEGANIKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|289434800|ref|YP_003464672.1| hypothetical protein lse_1435 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171044|emb|CBH27586.1| hisS [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 427

 Score = 92.9 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 61/427 (14%), Positives = 119/427 (27%), Gaps = 26/427 (6%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            + A            E+  P  +  +L+        D   KE
Sbjct: 3   LPRGTRDILPEEVTKWHFLEAAFAAVCENYQYEEIRTPIFEHTELFERGVGDSTDIVSKE 62

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +   F  H      + P   Y  +  FR E        R
Sbjct: 63  MYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGAVSQPIKMYYNEPMFRYERPQGG---R 119

Query: 152 SREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL---- 206
            R+F            P       +     + RI  R     I    +            
Sbjct: 120 QRQFTQMGIEAIGSDDPAIDVEVISLAMEFFKRIGLRNIKLVINSLGDKESRLKHREALV 179

Query: 207 -SHEFIVLADTGETQVFCSKD---FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
              E  +     E QV   K+    +D     +N       S+   + + +  Y      
Sbjct: 180 SHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQTAPSILDYLNEESVAYFNQVQT 239

Query: 263 HNEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +   L  S  E      RG++      F   ++     + T     G+ H +     G  
Sbjct: 240 YLNALEISF-EIDPTMVRGLDYYNHTTFEIMSEEEGFGAKTTLCGGGRYHGLVKEFGGPD 298

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
              +   +               +   K   + +             +   L K G    
Sbjct: 299 TPGIGFGIGVERILLALEKADVKIPAKKPLEVYVITAQPEAELKAVTLVNELRKNGISAE 358

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D +  ++ +Q   A+       +I+G + +     ++K+  TG +E +  + +      
Sbjct: 359 KDYLKRKLKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQETVFEDTLETVLIE 418

Query: 441 RFSNNRP 447
           + +N + 
Sbjct: 419 KLTNTKE 425


>gi|46581769|ref|YP_012577.1| histidyl-tRNA synthetase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|50403648|sp|P62379|SYH_DESVH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46451192|gb|AAS97837.1| histidyl-tRNA synthetase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311232328|gb|ADP85182.1| histidyl-tRNA synthetase [Desulfovibrio vulgaris RCH1]
          Length = 417

 Score = 92.9 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 61/419 (14%), Positives = 113/419 (26%), Gaps = 33/419 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G     P        + ++ R+   R G +E+  P L+  DL+  S     D   KEM  
Sbjct: 9   GFADLFPPESDVFTRMESVARQVFGRYGFVELRTPILERTDLFCRSIGTETDVVQKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR D+++   P     +   +    +  +      +     FR E   +    R R+F
Sbjct: 69  FPDRKDRSLTMRPEATAGVMRAYIESGRHTQEPVSKLFTSGPMFRYERPQKG---RMRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIV 212
              +          +      M + +L      GL          E  P+      +F+ 
Sbjct: 126 HQINCEVLGPVEPHADAELVLMLMRFLTELGLTGLSLQINSLGCKECRPLYRKALSDFLA 185

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK------ 266
             D       C +     P+   +        L +               H +       
Sbjct: 186 SIDNAALCEDCRRRMETNPLRVLDCKVPGCRELTANAPTILEHNCPECRTHFDAVLRILD 245

Query: 267 -------LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  L D L        R          G++ S+     + G   +     +   G 
Sbjct: 246 SRNVPYVLNDRLVRGLDYYNRTTFEVVSDSIGSQGSVAGGGRYDGLISQLGGPDVPGVGF 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                  A++    D     +  +V         +                 L   G   
Sbjct: 306 ACGMERLALMMPGADAPRPHFHVAVLDPAAQDAALLLA------------EDLRAQGLTG 353

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
                   I S+  +A   G    +I+G   ++   V +K   +G +E +  + V    
Sbjct: 354 SVGFGAGSIKSRMRLAGKSGARACLILGGDELAAGTVVVKDMDSGEQETIGRDAVAARL 412


>gi|227530052|ref|ZP_03960101.1| histidyl-tRNA synthetase [Lactobacillus vaginalis ATCC 49540]
 gi|227350020|gb|EEJ40311.1| histidyl-tRNA synthetase [Lactobacillus vaginalis ATCC 49540]
          Length = 433

 Score = 92.9 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 58/418 (13%), Positives = 124/418 (29%), Gaps = 23/418 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G    LP   +    V  + R      G  E+  P  +  +++        D   K+M  
Sbjct: 13  GTVDILPGESELWQKVENVARNTFAEFGYSEIRTPMFEDYNVFARNVGDTSDIVEKQMYD 72

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   +  +         P+  Y +   FR E        R R
Sbjct: 73  FHDKGDRHIALRPEGTAGVVRAYVQNKLFGPEYAKPYKVYYMGPMFRYERPESG---RQR 129

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGG 204
           +F      + +                              + LG K          I  
Sbjct: 130 QFTQIGCEALNSESPQIDAEVILEALMFFKRLGISGLRVAINTLGDKETRDNYRQALIDY 189

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA-ATSDVH 263
              H   +  D+ E         +D    ++     D  S+   +  ++A Y  +   + 
Sbjct: 190 LKPHYDELSDDSKERLYKNPLRVLDSKDETDKKIVADAPSILDSLSDYSAKYFDSVKRIL 249

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           ++   D + +N+ V         IF      S      +    G   Y  + S   G   
Sbjct: 250 DKFNVDYVVDNEMVRGLDYYTHTIFEI-MSNSSVFGGGYTTICGGGRYNGLISQIGGPDE 308

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKIS--LINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                         ++  ++ +        +      +   +   ++   L  +G  V  
Sbjct: 309 GGIGYGIGVERLLLLLRQENKSFIPQPGLDLFFATVGEEADEFAFELMEPLRNMGIKVDK 368

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE--IKHRLTGIR-EDMSLEEVIN 436
           D  G ++G+Q   A         ++G   VS  ++E  +    +  + + +S++E+++
Sbjct: 369 DYQGLKVGTQIKEASRRNSKYFAVIGDNEVSSKEIELNLTEADSSEKGQKVSIDELLS 426


>gi|56476109|ref|YP_157698.1| histidyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
 gi|81677555|sp|Q5P7B4|SYH_AZOSE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|56312152|emb|CAI06797.1| histidyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
          Length = 438

 Score = 92.9 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 62/432 (14%), Positives = 121/432 (28%), Gaps = 35/432 (8%)

Query: 31  MIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY- 86
           MI       G+   LP   +A ++   I+R+     G   + +P ++   L+  + G   
Sbjct: 7   MIQALQAVRGMNDILPDEAEAWEHFEDIVRDWLRSYGYRPIRMPIVEPTPLFKRAIGEVT 66

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D   KEM    D  +   +                 K         Y     FR E   +
Sbjct: 67  DIVEKEMYSFEDALNGEQLTLRPEGTASCVRAAIQHKMLSAGAQRLYYHGPMFRHERPQK 126

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
               R R+F      +           +  M       F    ++       S       
Sbjct: 127 G---RYRQFHQIGVEALGFDGPDIDAEHILMCARLWDDFGLEDVRLELNSLGSSDERARH 183

Query: 207 SHEFIVLADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
             E +   +    ++     +     P+   +T   ++  L     +        S  H 
Sbjct: 184 RAELVAYLERHRERLDDDGRRRLHTNPLRILDTKNPELQDLVDNAPKLLDFLGEDSLKHF 243

Query: 265 -------------EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKD 309
                         ++   L        R +        G + ++     + G       
Sbjct: 244 NGVQVLLKDAGVPYRINHRLVRGLDYYNRTVFEWVTTRLGAQGTVCAGGRYDGLVEQLGG 303

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                  + +G  R++A   ES  + +       V              +  +    +  
Sbjct: 304 RPAPAAGFAMGIERLLALWRESGGEAEPAQPDVYVVHLG----------EQAQRLAFRAA 353

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIRED 428
             L   G  V     G    SQ   AD  G P+ V++G    +  +V +K  R  G ++ 
Sbjct: 354 EALRSHGFAVLMHCGGGSFKSQMKKADASGAPVAVVIGDDEAATGEVGLKPLRGPGGQQR 413

Query: 429 MSLEEVINYASH 440
           ++L+ + N  + 
Sbjct: 414 VALDGLANAVAE 425


>gi|320354861|ref|YP_004196200.1| histidyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032]
 gi|320123363|gb|ADW18909.1| histidyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032]
          Length = 424

 Score = 92.9 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 71/422 (16%), Positives = 124/422 (29%), Gaps = 17/422 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP       ++    R+   R G  E+  P ++  +L+V S     D   KEM  
Sbjct: 8   GFKDILPDTAVRWRHIEQRARDIFERFGMREIRTPIMEKTELFVRSIGEATDVVEKEMYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+    +   P     +   F  H    +      Y I   FR E   +    R R+F
Sbjct: 68  FIDKG---ITMRPEATASIMRAFIEHGLHVQQPIQRLYAIGPMFRHERPQKG---RLRQF 121

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
              DA                M    L          +         P        F+  
Sbjct: 122 HQLDAEIIGAVEPRVDAELIAMGQMLLDELGLSVSLELNSLGCPICRPPFKQRLVAFLEQ 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP- 272
              G  +  C +     P+   +       +L               D H +++  +L  
Sbjct: 182 TSEGLCED-CKRRTQTNPLRVLDCKKPTCRALVKDAPSLLDALCPDCDRHFQEVQGALQG 240

Query: 273 -----ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                       RG++      F    +   +    GA G+   +     G     +  A
Sbjct: 241 LEIPFRLNPFMVRGLDYYTRTTFEFLTTDLGAQAAVGAGGRYDGLIEELGGPPLSGIGFA 300

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +            P+   P   + I I A  Q     C ++   L K G  V  D  G  
Sbjct: 301 MGLERIALLLEQRPEGEQPTDTTDIFIAALGQATLAPCSQLAHGLRKQGIRVGIDYSGRG 360

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           + +    A  +     +IVG    +  +  +++  T  ++ ++L    +  S R + +  
Sbjct: 361 LKALLKQAARINARFTLIVGDDEWASQQGILRNMTTQEQQPVALVGTTDELSRRLAEHLQ 420

Query: 448 VL 449
           VL
Sbjct: 421 VL 422


>gi|70998636|ref|XP_754040.1| glycyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66851676|gb|EAL92002.1| glycyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|159126226|gb|EDP51342.1| glycyl-tRNA synthetase [Aspergillus fumigatus A1163]
          Length = 699

 Score = 92.9 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 45/381 (11%), Positives = 112/381 (29%), Gaps = 30/381 (7%)

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           +LR+ +     + +    E          +K                    +   G    
Sbjct: 304 LLRVREFLMAEIEHYVDPEGGKKHHRFEEVKDIEMAFLNRNVQLSGCTKTEKMTIGKAVE 363

Query: 153 REFL---MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
              +       +   +     K   +   + + +              ++  +      E
Sbjct: 364 TGMVDNETLGYFIARIQLFLLKLGVDPNKLRFRQHMANEMAHYAADCWDAELLTSYGWIE 423

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            +  AD     +   K+    P+       + +      V+     +        + +  
Sbjct: 424 CVGCADRSAYDLTVHKNKTGAPLVVREPRAEPLKIEEWQVDLDKKKFGPRFKKDGKAVAA 483

Query: 270 SLP------ENKR-----------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           ++         K            V   G+  G +             T    + +++  
Sbjct: 484 AVEALSQELREKLAIDLEKNGKIEVDVEGVGSGKV-ELDQDIVKIEKRTRV-ENVREYTP 541

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGII-------WPDSVAPFKISLINIKAHDQVCRDAC 365
            +     G  R++ ++IE  +  +          +P ++AP K+ ++ +  H    R   
Sbjct: 542 NVIEPSFGIGRILYSMIEHVYWAREEDEARGVLSFPPAIAPTKVLIVPLSTH-ASFRPLL 600

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +++  +L ++G     DD    IG ++A  D LG P  + V  + V D+   ++ R T  
Sbjct: 601 QQLMTKLRRMGISNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRDRDTTK 660

Query: 426 REDMSLEEVINYASHRFSNNR 446
           +   S +E++          +
Sbjct: 661 QVRASEDEILQAIKSLVDGEK 681



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G   L+N+  + R+        +E+    L   ++   SG  D +   M +
Sbjct: 81  SGLYDYGPPGTALLNNIVDLWRKHFVLEEDMLEVDCTMLTPHEVLKTSGHVDKFADWMCK 140


>gi|313623670|gb|EFR93824.1| histidyl-tRNA synthetase [Listeria innocua FSL J1-023]
          Length = 425

 Score = 92.9 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 58/427 (13%), Positives = 116/427 (27%), Gaps = 30/427 (7%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            + +  ++        E+  P  +  +L+        D   KE
Sbjct: 5   LPRGTRDILPEEVSKWHFLESAFKKVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKE 64

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +   F  H      + P   Y  +  FR E        R
Sbjct: 65  MYTFEDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGG---R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF- 210
            R+F      +                   +  F ++GL +I +   S            
Sbjct: 122 QRQFTQMGIEALGSDDPSIDVEV---ISLAMEFFRKIGLTNIKLVINSLGDKESRLKHRE 178

Query: 211 ----IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E    C       P+   +   D    L              S  + E 
Sbjct: 179 ALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFEN 238

Query: 267 LFDSLP------ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           +   L       E      RG++      F   +      + T     G+ H +     G
Sbjct: 239 VKKYLTALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVKEFGG 298

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                +   +              ++   K   + +             +  +L + G  
Sbjct: 299 PDTPGIGFGIGVERILLALEKAEINIPETKPLEVYVITAQPEAELKAVTLVNKLRQNGIS 358

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              D +  ++ +Q   A+       VI+G + +     ++K+  TG +E +S   +I   
Sbjct: 359 AEKDYLKRKLKAQLKDANRKKAIYTVILGEEELQTGNYQLKNMETGEQEAVSETTIIEKL 418

Query: 439 SHRFSNN 445
           ++     
Sbjct: 419 TNTKEEK 425


>gi|290985788|ref|XP_002675607.1| Glycyl-tRNA synthetase [Naegleria gruberi]
 gi|284089204|gb|EFC42863.1| Glycyl-tRNA synthetase [Naegleria gruberi]
          Length = 650

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 54/152 (35%), Gaps = 12/152 (7%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS------------VAPFKISLINI 354
           G+++   +     G  R++  ++E S+  +     +                     + +
Sbjct: 473 GRNYTPGVIEPSFGIGRIIYCLLEHSYWVRPKQEHEKEEDKIQRAVLSLPPAIAPYKVAL 532

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                      +K+   L++ G     D   + IG ++A AD +G P  + +    V+  
Sbjct: 533 LPIKADQDQIVKKLQQSLARYGISHRVDAGNQNIGKKYARADDIGIPFAITIDDNSVTAG 592

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            V I+ R +  +  + + ++I   +      +
Sbjct: 593 TVTIRERDSCEQVIVPISDLITVLNDLIDRIK 624



 Score = 46.3 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 7/129 (5%)

Query: 24  KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQS 76
           +L+ R   +           G+Y + P       N+  + R    N    +E+   +L  
Sbjct: 29  ELLTRRFFVIPSFEIYGGVAGLYDYGPPACAIKANILDLWRRHFVNEENMLEVDCSSLTP 88

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             ++V SG    +   M++    ND         E + T++  +   +           +
Sbjct: 89  ETVFVASGHVQRFADWMVKDVVTNDCFRADKLVGEFIDTELEENSELTQEKTEEYALVKK 148

Query: 137 LKFRDELRP 145
                + + 
Sbjct: 149 KIDDYDGKG 157


>gi|325972878|ref|YP_004249942.1| prolyl-tRNA synthetase [Mycoplasma suis str. Illinois]
 gi|323651480|gb|ADX97562.1| prolyl-tRNA synthetase [Mycoplasma suis str. Illinois]
          Length = 463

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/404 (14%), Positives = 124/404 (30%), Gaps = 59/404 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G +   P G    + + + +  E ++ G   +  P L     + E              
Sbjct: 23  SGTFFLHPRGCFIWEQIQSFLNAEFSKLGVSNVLFPALLPFQKFQE-------------- 68

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               ++        EE+M        +S   L                P   ++ S  F 
Sbjct: 69  ----EQKNSETLNLEEIMRLHNSKSEQSVVALR---------------PTSEILFSHYFK 109

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +        P       +               +       S         +F +    
Sbjct: 110 ERLKERDIKLPFLLNQWSSVYREERNTKLFFRSKEFYWQELHSLHENQKDL-DFHLEKIH 168

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              +    +      I  E T  +                 A   + NE +   LP+ + 
Sbjct: 169 EIYKKLLRELLCIEYITGEKTILER-------------FPGAQKTLTNECI---LPDGQ- 211

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                +++         +S  M   + GA+  +      S G  + R++ A++E   D  
Sbjct: 212 ----SLQLTTTHDLSNFFSKLMDIKYWGANDIEMTPLQLSAGS-STRLIGALVEMHKDSV 266

Query: 337 GIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
           G+I P +++   I+++ +  + D+        I  +L      +  DD     G +    
Sbjct: 267 GVILPWNLSKENIAILLLGENRDEETISYISSIREKLC--NYRLHIDDSYSSFGKKINKV 324

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           + LG P+ +I+G + + + K+ IK RL+  + +  L  + N  S
Sbjct: 325 ERLGIPVSLIIGQQEIKNKKITIKSRLSESKYECDLSNLENEIS 368


>gi|240103794|ref|YP_002960103.1| glycyl-tRNA synthetase [Thermococcus gammatolerans EJ3]
 gi|259511936|sp|C5A1H0|SYG_THEGJ RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|239911348|gb|ACS34239.1| Glycyl-tRNA synthetase (glyS) [Thermococcus gammatolerans EJ3]
          Length = 570

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 6/140 (4%)

Query: 307 GKDHYVQMGSYGIGAMRVVA----AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G+     +     G  R         +    D   +     +AP +++++ + A  +  +
Sbjct: 430 GEKIVPHVLEPSFGIDRPFYLLLENSLVIEEDRTYLKLKKDMAPIEVAVLPLVAK-EPLK 488

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I+ +L K G  V +D+    IG ++   D +G P  V + ++   DS V I+ R 
Sbjct: 489 SIAYEIFRKLQKAGFIVVYDEKD-TIGRRYLRYDEIGTPYCVTIDNQTPEDSTVTIRDRD 547

Query: 423 TGIREDMSLEEVINYASHRF 442
           T  +  +S+EE+ +      
Sbjct: 548 TREQVRVSIEELPSKLRELI 567



 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 93/344 (27%), Gaps = 32/344 (9%)

Query: 13  ENPRDAEIASHKLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           E P   EI    LM R G       I+  S+G Y + PLG      +   IRE   R G 
Sbjct: 3   EKPDKYEIL-QDLMRRRGFAWGSFEIYGGSRGFYDYGPLGATIKRKIEQKIREAFQREGF 61

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    +++ SG  + +   ++       +        E +  D+     +   
Sbjct: 62  FELETPDITPEKVFIASGHVEKFVDPLVECRKCGARFRADHIIEEALGMDVEGLSAEELT 121

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH-----SYNKMFVSY 181
            L         +   EL   +       F  K     D               N   ++ 
Sbjct: 122 KLIREHDIRCPECGGELSDVWYFN--LMFETKIGPYGDQKGYLRPETAQGIFVNFKRLNA 179

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                         +A    I        +      E ++F +      P  +E+  FD+
Sbjct: 180 FARNKLPFGVFQIGKAYRNEISPRQGMLRLREFTQAEAEIFFN------PSETEHPHFDE 233

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           + +    +               E    +L E +  +   ++ G+I      Y + M   
Sbjct: 234 VKNEKLRL------------YPIEHQLKNLGEIELTAEEAVKKGYIMNTFFAYYMVMVKR 281

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                G           +   R   +      +     +     
Sbjct: 282 VLLDIGIPEDKIRFRQQLPEERAHYSRDTWDAEVHSERFGWVEC 325


>gi|126175191|ref|YP_001051340.1| histidyl-tRNA synthetase [Shewanella baltica OS155]
 gi|153001517|ref|YP_001367198.1| histidyl-tRNA synthetase [Shewanella baltica OS185]
 gi|217972554|ref|YP_002357305.1| histidyl-tRNA synthetase [Shewanella baltica OS223]
 gi|304410034|ref|ZP_07391653.1| histidyl-tRNA synthetase [Shewanella baltica OS183]
 gi|307302253|ref|ZP_07582011.1| histidyl-tRNA synthetase [Shewanella baltica BA175]
 gi|166228612|sp|A3D6V8|SYH_SHEB5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166228613|sp|A6WQP6|SYH_SHEB8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|254782344|sp|B8E9S8|SYH_SHEB2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|125998396|gb|ABN62471.1| histidyl-tRNA synthetase [Shewanella baltica OS155]
 gi|151366135|gb|ABS09135.1| histidyl-tRNA synthetase [Shewanella baltica OS185]
 gi|217497689|gb|ACK45882.1| histidyl-tRNA synthetase [Shewanella baltica OS223]
 gi|304351443|gb|EFM15842.1| histidyl-tRNA synthetase [Shewanella baltica OS183]
 gi|306914291|gb|EFN44712.1| histidyl-tRNA synthetase [Shewanella baltica BA175]
          Length = 426

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/423 (13%), Positives = 125/423 (29%), Gaps = 28/423 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        V A++R   +  G  E+  P +++ DL+  S G   D   KEM  
Sbjct: 10  GMNDILPTQSPLWQKVEAVLRSSVSAYGYSEIRTPIVENTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            AD N  ++   P            +   Y      +Y +   FR E   +    +  +F
Sbjct: 70  FADNNGDSLTLRPEGTASTVRAGNENGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFNQF 128

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            ++                  +++       H     +         +  D    F+   
Sbjct: 129 GVEVYGIGTADIDAEVLMLSARLWEKLGISDHVSLELNTLGDPAERAVYRDALIAFLEQH 188

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD----- 269
                +    +     P+   ++   ++ ++ +   +        S  H  +L +     
Sbjct: 189 KDALDED-SKRRMYSNPLRVLDSKDQNVQAILAGAPELMDFLGEESKTHFSQLRELLDAV 247

Query: 270 --------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                    L        R +        G++ ++     + G   +       + G   
Sbjct: 248 GIKYTINPRLVRGLDYYNRTVFEWVTSSLGSQGTVLAGGRYDGLVAQLGGKDTPAVGFAM 307

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDV 379
                 ++  + +    I  +      + +      D    +   KI   L        V
Sbjct: 308 GLERIVLLLETLELNKDIPSE------VDVYVTAMGDSCLVE-AIKIAQELRSALPNLKV 360

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYA 438
                G  +  Q   AD  G  + +++G   +++  V +KH R    ++ ++   +  + 
Sbjct: 361 MSHCGGGNVKKQMKRADKSGASVALLIGEDELAEGMVTVKHLRNDIEQQRVARSALGAFL 420

Query: 439 SHR 441
           +  
Sbjct: 421 AEL 423


>gi|260591222|ref|ZP_05856680.1| glycine--tRNA ligase [Prevotella veroralis F0319]
 gi|260537087|gb|EEX19704.1| glycine--tRNA ligase [Prevotella veroralis F0319]
          Length = 515

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/364 (17%), Positives = 119/364 (32%), Gaps = 66/364 (18%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   AD  +K  +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 198 FSTEMGASADATNKIYLRPETAQGIFVNFLNVQKTGRMKLPFGICQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           V R REF   +   F   P      +       L     LG              GD ++
Sbjct: 258 VFRMREFEQMEMQFFCQ-PGTEMKWFEYWKKHRLAWHEALG-------------MGDDNY 303

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            F                                        +  A YA  +     ++ 
Sbjct: 304 RFHDH-------------------------------------EKLAHYANAATDIEFRMP 326

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               E + + +R            K+S      F     +++        IG  R+  +V
Sbjct: 327 FGFKEVEGIHSRTNFDLSQHE---KFSGRQIKYFDPERNENYVPYDVETSIGVDRMFLSV 383

Query: 329 IESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           +  S+  + +           P+ +AP K +++ +   D    +  ++I  +L     + 
Sbjct: 384 MCHSYTEEPLENGSSRIVLKLPEPLAPVKCAVLPLVNKD-GLPEKAQEIVNQLK-FHFNT 441

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              +  + IG ++   D +G P  V V    ++D+ V +++R +  +E + +E++     
Sbjct: 442 HM-EAKDSIGKRYRRQDAIGTPFCVTVDGDTLNDNTVTLRYRDSMKQERVPVEKLREIIE 500

Query: 440 HRFS 443
            R S
Sbjct: 501 DRVS 504


>gi|187250797|ref|YP_001875279.1| histidyl-tRNA synthetase [Elusimicrobium minutum Pei191]
 gi|229558665|sp|B2KBC0|SYH_ELUMP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|186970957|gb|ACC97942.1| Histidyl-tRNA synthetase [Elusimicrobium minutum Pei191]
          Length = 410

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/401 (14%), Positives = 112/401 (27%), Gaps = 30/401 (7%)

Query: 52  NVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPT 109
            + A  R      G  E+ +PTL+  +L+++S     D   KEM    D   + +   P 
Sbjct: 21  ELEACARRVFTLAGGTEVRIPTLELKELFIKSTGDTTDIVQKEMYAFEDAGGRVLAMRPE 80

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA-YSFDLTPE 168
                   +  +  +        + I   FR E        R REF      Y  + +P 
Sbjct: 81  GTPGTVRAYIENNFAQTAPVQKLFYIGNMFRAERPQAG---RYREFEQIGMEYIGNPSPA 137

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                   +         +     I               + ++     +    C K   
Sbjct: 138 ADAEIILMIKDIVTSFGVKNYGVKINSLGCQE--CRPAYKQELINYLKKDFDTLCEKCKD 195

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-------DSLPENKRVSARG 281
                        I               A  + H  ++        D + +   V    
Sbjct: 196 RLEKNPLRVLDCKIDGARFKENAPKQKLCAACENHFNEVKTFLQGRIDYIIDPSLVRGLD 255

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
                +F F    S   +    G          G+        + AV  +    + I   
Sbjct: 256 YYTRTVFEFQAGDSAQNAIAGGGRYDSLVKSMGGA-------DMPAVGFAMGVERTIAAR 308

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD----DMGEQIGSQFAVADL 397
                 K + I + + D+ C     +I + L   G  V  D    D   +   Q   AD 
Sbjct: 309 GETKDNKQNKIFVVSLDKNCNAKAFEIMSLLRSAG--VICDGGLFDKNLKA--QMKQADR 364

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
                 +++G+       V ++   +G ++++   +++N  
Sbjct: 365 TKSSFALLLGADEFEKGVVTMRDLSSGEQQEIKFNDILNKV 405


>gi|168484053|ref|ZP_02709005.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|172042675|gb|EDT50721.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|332198735|gb|EGJ12817.1| histidyl-tRNA synthetase [Streptococcus pneumoniae GA47368]
          Length = 429

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 119/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIVMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|307707792|ref|ZP_07644270.1| histidyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307616174|gb|EFN95369.1| histidyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
          Length = 426

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 119/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVSYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|256847119|ref|ZP_05552565.1| histidyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715783|gb|EEU30758.1| histidyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
          Length = 430

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/413 (15%), Positives = 125/413 (30%), Gaps = 22/413 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            + V  + R+  ++ G   +  P  +S D++  S     D   KEM    D+ D+ +   
Sbjct: 20  WEYVEKLARKIFHQYGYQGIRTPLFESYDIFARSAGDTSDVVTKEMYDFHDKGDRHIALR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  +         P+  Y +   FR E        R REF      +F  
Sbjct: 80  PEGTAGVVRAFNENKLYGPEYPKPYKVYYVGPMFRYERPQSG---RQREFHQIGVEAFGS 136

Query: 166 T-PEGSKHSYNKMFV--------SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             P                          + LG +       +  I     H   +  D+
Sbjct: 137 DNPATDVEVIAMALQLFTKLGLTDLRVAVNTLGDQKSRDDYRTALINYLKPHYDELSEDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            E         +D   P +     D  S+ + +  +  A +     + +    D + +  
Sbjct: 197 QERLEKNPLRVLDSKDPRDQKFVADAPSILDYLTPEANARFEQVKQMLDVLGIDYVVDPD 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF    K +  +   +    G   Y  +     G               
Sbjct: 257 MVRGLDYYNHTIFEVMVK-AKSLGNGYTTICGGGRYSGLVEQLGGPDLSGVGFGIGEERL 315

Query: 336 KGIIWPDS---VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
             ++  +         + +  +   D    +   ++       G     D MG +  +QF
Sbjct: 316 LLLLNDEGIQLPTDDHLDVYVVGIGDDTNLE-SLQLVQAARHAGLIADRDFMGRKPKAQF 374

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             AD +   + + VG + + +  V +K   TG    + L +++N  ++ F  +
Sbjct: 375 RTADRMHARVVLTVGKRELEEGNVHLKVMATGKEVSVKLADLLNDFANVFEEH 427


>gi|206895371|ref|YP_002247110.1| histidyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
 gi|206737988|gb|ACI17066.1| histidyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
          Length = 406

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/406 (13%), Positives = 127/406 (31%), Gaps = 16/406 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP        +  ++ +     G  E+  P L+ ++L+ +      D   KEM  
Sbjct: 7   GMRDILPPETFKWRRLEILLSKAALLYGYGEIRTPILEFSELFRKGLGDESDVALKEMYE 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+N   +   P     +      H   Y       +     FR E        R R+F
Sbjct: 67  FEDKNGDVLSLRPEGTAPVARAVIQHHL-YDIPVLRLFYTGPMFRRERPQAG---RYRQF 122

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
                 +F ++          +      + +      I         PI  +    F++ 
Sbjct: 123 HQFGIEAFGVSQPYMDIEVLLVVKRIFSLLNLPLTIHINSLGCDECRPIYMEQLRNFVLS 182

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK----LFD 269
           A   + ++   K        S+  +  ++ +    + ++  P       H  +       
Sbjct: 183 AIPEDEEIERFKKNPLKLFDSKRPEHAEVKAEAPKISEYLCPACKDHYAHVIRAAKLFGV 242

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
            + E+ +++ RG +      F         A      G  +   +  YG   +  +   I
Sbjct: 243 PIVEDPQLA-RGFDYYTRTVFEGYVGEFNLAVV---GGGRYDHLVSFYGGPDVPGIGFAI 298

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                   +     + P       +    +   +   ++  +L   G  +  D    ++ 
Sbjct: 299 GLERLITSLEKVPIIDPEPKKTYFLATTGEDMIEPAFQLAEKLRDHGIGIIMDLRQGKLQ 358

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            Q  +A+ +     +I+G +   +  + ++  +TG +  ++ E V+
Sbjct: 359 KQLKLANKVEVRYVLILGEEEQRNHVITLRDMVTGEQRIVAQEAVL 404


>gi|262202241|ref|YP_003273449.1| histidyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
 gi|262085588|gb|ACY21556.1| histidyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
          Length = 421

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/425 (15%), Positives = 128/425 (30%), Gaps = 34/425 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           GI  + P        V   + +   R G   + +P  +   L+        D   KEM  
Sbjct: 10  GIPDYYPPASADFRRVRDTLTDAARRAGYGHIELPVFEDTALFARGVGESTDVVSKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR D+++   P     +      H      LP         FR E        + ++ 
Sbjct: 70  FADRGDRSVTLRPEGTAGVMRAVIQHGLDRGQLPVKLSYAGPFFRYEKPQTGRYRQLQQV 129

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVL 213
            ++        P             Y R+        I    +  S P   +   +F+  
Sbjct: 130 GVEA--IGVDDPALDAEVIAVADEGYRRLGLSGFRLEITSLGDDESRPRYREALQQFLFG 187

Query: 214 ADTGET----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            D  E             +D   P       D   L   +      +      H ++L  
Sbjct: 188 LDLDEPTRQRAQLNPLRVLDDKRPEIKAATADAPLLIDYLSDDARAHFELVLAHLDRLGV 247

Query: 270 SLPENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKG---ADGKDHYVQMGSYGI 319
              E      RG++      F       G +  +     + G     G    +    +G+
Sbjct: 248 PY-ELNSRLVRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMRQLGGKQDLSGIGFGL 306

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R + A+          +     A  ++  + +       +     +  +L   G  V
Sbjct: 307 GVDRTMLAL------EAEGVAGTEAARCQVFGVPLGT---AAKAELVGVAGQLRAAGISV 357

Query: 380 F--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
              + D G + G+    AD  G  + +++G + +    VE+K+   G+++ + +++V+  
Sbjct: 358 DLAYGDRGLK-GAM-KAADRSGAKIALVLGDREIEQRVVEVKNLTDGVQQQVCIDDVVGQ 415

Query: 438 ASHRF 442
                
Sbjct: 416 VQRLL 420


>gi|238797965|ref|ZP_04641455.1| Histidyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
 gi|238718170|gb|EEQ09996.1| Histidyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
          Length = 424

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/420 (13%), Positives = 126/420 (30%), Gaps = 27/420 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        + +I+++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTAIWQRIESILKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHS----YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
               A  F L              + + +     H     +     ++     +    F+
Sbjct: 126 HQLGAEVFGLQGPDIDAELILLTARWWRALGISEHVQLELNSIGSLDARADYREALVTFL 185

Query: 212 VLA------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHN 264
                    D            +D   P      +D   L+  +++ +   +A   ++ +
Sbjct: 186 EQHVEVLDEDCKRRMYSNPLRVLDSKNPEVQQLLNDAPKLSDYLDEESKQHFAGLCELLD 245

Query: 265 EKLFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +         + V         +F       G + ++     + G    +      +  +
Sbjct: 246 KASIPYTVNERLVRGLDYYNRTVFEWVTNSLGAQGTVCAGGRYDGL--VEQLGGRATPAV 303

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G    +  ++             +     +                E +   +  +    
Sbjct: 304 GFAMGLERLVLLVQAVNADFQVPATVDVYVISSGQNTQSAAML-LAESLRDAMPTLKLMT 362

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +   G  +  QF  AD  G  + +++G   V+  KV +K    G +E ++  +V    +
Sbjct: 363 NY--GGGNVKKQFTRADKWGARVALMLGESEVAAQKVVVKDLRNGEQETLAQADVAARLA 420


>gi|184156832|ref|YP_001845171.1| histidyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|332873247|ref|ZP_08441204.1| histidine--tRNA ligase [Acinetobacter baumannii 6014059]
 gi|229558636|sp|B2I3E6|SYH_ACIBC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|183208426|gb|ACC55824.1| Histidyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|322506724|gb|ADX02178.1| hisS [Acinetobacter baumannii 1656-2]
 gi|323516598|gb|ADX90979.1| histidyl-tRNA synthetase [Acinetobacter baumannii TCDC-AB0715]
 gi|332738759|gb|EGJ69629.1| histidine--tRNA ligase [Acinetobacter baumannii 6014059]
          Length = 430

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/421 (10%), Positives = 111/421 (26%), Gaps = 23/421 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP    A   +   +    +  G  ++ +P ++   L+  +     D   KEM    D+ 
Sbjct: 14  LPTQTAAWRRLEQHLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMYTFFDKG 73

Query: 101 DKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           +         E     +         R      + +   FR E   +    +  +F ++ 
Sbjct: 74  NPPESLTLRPEGTAGCVRALVEHNLLRGATPRVWYMGPMFRYEKPQKGRYRQFHQFGVET 133

Query: 160 AYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                            +++             +     E      +    F+       
Sbjct: 134 FGVATPDIEAEVILMTARLWKRMGVAHMVQLELNTLGEKEERTEYRNALVAFLNEHKDAL 193

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------- 271
            +    +     P+   ++  +    +     +        S  H ++L D L       
Sbjct: 194 DED-SQRRLTTNPLRILDSKIESTQKILENAPKLYDFLKEDSLSHFQQLQDYLTAAGIKF 252

Query: 272 ------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                         + +        G++ ++     + G  G+       S       + 
Sbjct: 253 VINQKLVRGLDYYNKTVFEWTTTALGSQGTVCGGGRYDGLVGQLKGKADQSVPAVGFGMG 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDD 383
              +    +              +          +     E++  +L        +    
Sbjct: 313 MERLLLLIEQVEQAEIVRDCEAFLVAEPAYQSKALV--LAEQLRDQLEAANSNIRIKT-G 369

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               + SQ   AD  G    +I+G +     ++ +K   T  +  ++L E++ +   +F+
Sbjct: 370 SQGSMKSQMKKADQAGAVYAIILGEREWEAQQLAVKELATAEQSQVALAELVPFLIEKFT 429

Query: 444 N 444
            
Sbjct: 430 K 430


>gi|260910053|ref|ZP_05916735.1| glycine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635821|gb|EEX53829.1| glycine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 513

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 113/355 (31%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM  L+D   K  +   T + +  +           +PF   QI   FR+E+  R  
Sbjct: 198 FSTEMGSLSDAASKIYLRPETAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      ++    + ++    LG  +   R           H
Sbjct: 258 IFRMREFEQMEMQFFVA-PGTELDWFHTWKETRMKWHQALGFGAENYRFHD--------H 308

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E +       + +     F                            +     +H+   F
Sbjct: 309 EKLAHYANAASDIEFHMPF---------------------------GFKEVEGIHSRTDF 341

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     K         G    +    +      +             S    A       
Sbjct: 342 DLSQHEK-------FSGKSIKYFDPQTNESYTPYVIETSIGVDRMFLSVMCHAFEE--EK 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P ++AP K++++ +   D    +   +I   L     +  +D+    I
Sbjct: 393 LENGETRTVLKLPAALAPIKLAVMPLVKKD-GLPEKAREIVNALK-FKFNTHYDEKD-TI 449

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  V V    ++D+ V ++ R T  +E ++++++ N    + S
Sbjct: 450 GKRYRRQDAIGTPYCVTVDHDTLTDNCVTLRFRDTMQQERVNIDQLENIIEDKVS 504


>gi|282164426|ref|YP_003356811.1| histidyl-tRNA synthetase [Methanocella paludicola SANAE]
 gi|282156740|dbj|BAI61828.1| histidyl-tRNA synthetase [Methanocella paludicola SANAE]
          Length = 434

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 68/440 (15%), Positives = 129/440 (29%), Gaps = 43/440 (9%)

Query: 30  GMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDS 88
            M  Q  KG   + P    A   V   I E     G  E+  P+L+  +L+  +SG  D 
Sbjct: 2   FMRFQSLKGFRDFYPEEMSARRKVLDKIFETVRPYGFREVDSPSLEMLELFRVKSG--DE 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
              +    AD+  + +   P     M  +     KS +  P  ++ +   +R E      
Sbjct: 60  ILTQTFNFADKGKRDVTLIPELTPTMARMVVEREKSLKR-PIKWFSMPKMWRYEEPQSG- 117

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYN--------------KMFVSYLRIFHRLGLKSIP 194
             R REF   +   F +    +                   +            G+    
Sbjct: 118 --RLREFYQLNVDIFGVPGPEADAEVLAAGIDIMLKLDLEGQFIFKVSDRRLMQGVLESM 175

Query: 195 MRAES-----------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
             A+              +      E +  AD  + ++      +D   P          
Sbjct: 176 GIADRREAVFAAIDKRYKVTHSEFKELLAKADLDDLKIGQLLSILDSRGPMLEALQKLRG 235

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLP-----ENKRVSARGIEVGHIFYFGTKYSLPM 298
            ++   EQ  A Y +   + +  +   +      +   +       G +F     Y    
Sbjct: 236 LISLENEQTRAGYESLEKLTDLLVMYHMEQYCELDPSVIRGLAYYTGTVFEC---YDTKG 292

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                   G+   +     G     V   + ++  +               +   I    
Sbjct: 293 ELRAIFGGGRYDKIIELFGGEPMPAVGFGMGDAVLEILMRRAKVWPEEKLTTDYFILTTS 352

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +    +   L +    V  D +G   G+Q   A+ +G    +I+G K ++  +V +
Sbjct: 353 AQYMETALFLAQALREKEFIVETDLLGRNFGNQMKYANSIGAKYVLILGEKEMAGGQVSV 412

Query: 419 KHRLTGIREDMSLEEVINYA 438
           K   TG +     EEVI + 
Sbjct: 413 KDMKTGEQRT---EEVIRFL 429


>gi|284162694|ref|YP_003401317.1| histidyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
 gi|284012691|gb|ADB58644.1| histidyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
          Length = 407

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 61/410 (14%), Positives = 124/410 (30%), Gaps = 19/410 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   +LP   +    +  ++R      G  E+  PT +  +L+  +SG  +   +E+   
Sbjct: 8   GTRDFLPDEMEKRRAIEKVMRRIAESYGYREVLTPTFEHLELFTIKSG--EGIVEEIYAF 65

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D++ + +   P     +  ++ +        P  FY     FR E   +    R REF 
Sbjct: 66  KDKSGRDLALRPELTAPVMRMYVNECMGMPK-PLRFYYFANCFRYERPQKG---RYREFW 121

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE----FIV 212
                        +      +    +   +      +        +  DL  +     + 
Sbjct: 122 QFGVELIGSDSYLADVEVISLAYEIMSALNIKFDLHVGHVGLLRHVLRDLDEKVAGKIMR 181

Query: 213 LADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           L D  +         +     +        +++    I+E+           H EK+  +
Sbjct: 182 LIDKKDLDTLDSYINEIGREDLKEVVYPLIELVGDTDIIEEAREIIPDFDFTHIEKVAKT 241

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS--YGIGAMRVVAAV 328
           L +        + +     + T       A   GA  +          +  G   V A  
Sbjct: 242 LDDLGVEFKIDLGIARGLDYYTGIVFEAYAEGLGAQNQICGGGSYRLAHLFGGDDVPATG 301

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                D    I        +     +    +       KI   +         D M   +
Sbjct: 302 FALGFDRIAEIC---EVDVEKPTKVVIVSFRGLEKEALKIANAIRSKAV-TITDVMERSV 357

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             Q + A+ +     VIVG K + + K+ +K+  T  +  M+L+E +N  
Sbjct: 358 KKQLSFANDISADYAVIVGEKELKEGKIAVKNLRTQEQSVMTLDEFLNKL 407


>gi|294675495|ref|YP_003576111.1| glycine--tRNA ligase [Prevotella ruminicola 23]
 gi|294472490|gb|ADE81879.1| glycine--tRNA ligase [Prevotella ruminicola 23]
          Length = 513

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/478 (12%), Positives = 141/478 (29%), Gaps = 79/478 (16%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSY------- 89
           +Y +   G +  +N+     +         + +         +W  SG  D++       
Sbjct: 33  VYDYGQNGVELKNNIKQYWWKAMTMLHENIVGIDSAIFMHPTIWKASGHVDAFNDPLIDN 92

Query: 90  ------------------------GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
                                    KE+ +   R   +       E           +  
Sbjct: 93  RDSKKRYRADVLIEDQIAKYDEKIQKEVEKARKRFGDSFDEAKYMETSERVKETKEKRDN 152

Query: 126 RNLPFTFYQIQLKFR--------DELRPRFGVMRSR----EFLMKDAYSFDLTPEGSKHS 173
            +  +                  +E+       ++     +F +  A     + + S   
Sbjct: 153 LHARYAEAMQGPDLEALKQIILDEEIVDPISGTKNWTDVRQFNLMFATEMGASADASMKV 212

Query: 174 Y------NKMFVSYLRIFHR-----LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           Y        +FV+YL +            +   +A    I        +   +  E Q F
Sbjct: 213 YLRPETAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFF 272

Query: 223 CSK--DFMDFPIPSENTDFDDIIS------LNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            +   +   FP   E                     +  A YA  +     K+     E 
Sbjct: 273 VAPGTELEWFPKWKETRMKWHQALGFGAENYRFHDHEKLAHYANAATDIEFKMPFGFKEV 332

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           + + +R            K+S      F     + +   +    IG  R+  +++  + +
Sbjct: 333 EGIHSRTNFDLSQHE---KFSGKSIKYFDPQTNESYTPYVIETSIGVDRMFLSIMCHAFE 389

Query: 335 GKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            + +           P ++AP K +++ +   D    +   +I  +L     +  +D+  
Sbjct: 390 EEKLENGETRTVLKLPAALAPVKCAVMPLVKKD-GLPEKAREIIDQLK-FHFNCQYDEKD 447

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             IG ++   D +G P  V V    ++D KV ++ R T  +E +++ ++ +    + S
Sbjct: 448 -SIGKRYRRQDAIGTPYCVTVDHDTLTDGKVTLRFRDTMEQERVNISDLNSIIEDKVS 504


>gi|291514571|emb|CBK63781.1| glycyl-tRNA synthetase [Alistipes shahii WAL 8301]
          Length = 514

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/483 (13%), Positives = 136/483 (28%), Gaps = 83/483 (17%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRY---------- 86
           +Y +   G +  +N+     +   +     + +          W  SG            
Sbjct: 33  VYDYGQNGVELKNNIKRYWWDSMVKLHENIVGIDAAIFMHPKTWEASGHVSAFNDPLIDN 92

Query: 87  ---------------------DSYGKEMLRLADRNDKAMIYGPTHEE--------VMTDI 117
                                +   KE+ +   R  ++       E            D 
Sbjct: 93  KDSKKRYRADVLIEDWLAKQDEKIEKEVEKARKRFGESFDEAKYRETSPRVAETAAKRDE 152

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH----- 172
                    N        Q+    E+       R+   + +    F      +       
Sbjct: 153 VHKRFADALNANDLAELRQIIVDCEIACPISGTRNWTEVRQFNLMFSTQMGSTAEGANTI 212

Query: 173 ----------SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
                       N + V            +   +A    I        +   +  E Q F
Sbjct: 213 YLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFF 272

Query: 223 ---CSKDFMDFPIPSENTDFDDIISLNSIVEQW-----TAPYAATSDVHNEKLFDSLPEN 274
               ++        +    +   +       ++      A YA  +            E 
Sbjct: 273 VRPGTEMKWWNEWKNTRMAWHRALGFGDDDYRFHDHDKLAHYANAATDIEYNFPFGFKEV 332

Query: 275 KRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
           + + +R       F  G   K+S      F    G+ +   +    IG  R+   V+ ++
Sbjct: 333 EGIHSR-----TDFDLGSHQKFSGKKLQYFDPETGESYVPYVVETSIGVDRMFLQVMSAA 387

Query: 333 HDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           +  + +          +P ++AP K++++ +   D    +  +KI   L K   +V +D+
Sbjct: 388 YTEQTLEGGDSRVVLKFPPALAPVKVAVLPLVKKD-GMPEVAQKIVD-LLKYDYNVVYDE 445

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               +G ++   D +G P  V V  + + D  V I+HR T  +E + +E +        S
Sbjct: 446 KD-SVGKRYRRQDAVGTPFCVTVDGQTLEDGTVTIRHRDTMAQERVKIESLHAMVDEECS 504

Query: 444 NNR 446
             +
Sbjct: 505 YRK 507


>gi|224536479|ref|ZP_03677018.1| hypothetical protein BACCELL_01353 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521921|gb|EEF91026.1| hypothetical protein BACCELL_01353 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 513

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 73/395 (18%), Positives = 128/395 (32%), Gaps = 57/395 (14%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD-SYGKEMLRLADRNDKAMIYGP 108
           LD +  II +E       E+  P +     W E  +++  +  EM   +D   K  +   
Sbjct: 166 LDELRQIILDE-------EIVCP-ISGTKNWTEVRQFNLMFSTEMGSTSDGAMKIYLRPE 217

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   QI   FR+E+  R  + R REF   +   F   P 
Sbjct: 218 TAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFFVK-PG 276

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                + K     L+    LG      R         L+H      D      F  K   
Sbjct: 277 TELEWFKKWKEIRLKWHKALGFGDDHYRYHD---HDKLAHYANAATDIEFLMPFGFK--- 330

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                 E         L+   +             NE     + E      R        
Sbjct: 331 ----EVEGIHSRTNFDLSQHEKFSGKNIKYFDPETNESYTPFVVETSIGVDR-------- 378

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                +   MSA++                          +ES      +  P ++AP K
Sbjct: 379 ----MFLSIMSASYCEE----------------------QLESGESRVVLRLPAALAPVK 412

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ +   D    +   +I   L        +D+    IG ++   D +G P  V V  
Sbjct: 413 LAVMPLVKKD-GLPEKAREIIDSLK-FHFHCQYDEKD-SIGKRYRRQDAIGTPYCVTVDH 469

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + D+ V +++R T  +E +++ E+ N  + R S
Sbjct: 470 QTLEDNCVTLRNRDTMQQERVAIAELNNIIADRVS 504


>gi|119476376|ref|ZP_01616727.1| histidyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
 gi|119450240|gb|EAW31475.1| histidyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
          Length = 417

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 116/443 (26%), Gaps = 68/443 (15%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLAD 98
             LP        + + +RE     G  E+  P ++  +L+  S G   D   KEM    D
Sbjct: 3   DLLPEESALWQYLESAVREVLAGYGYQEIRFPIVEQTELFKRSIGEVTDIVEKEMYTFND 62

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           RN +++   P            +           +     FR E   +    R R+F   
Sbjct: 63  RNGESLTMRPEGTASCVRACLQNSLLDNQQIQRLWYHGPMFRYERPQKG---RLRQFHQI 119

Query: 159 DAYSFDLTPEGSK---------------------------------HSYNKMFVSYLRIF 185
              SF +                                        +Y    V YL   
Sbjct: 120 GVESFGVATPDVDAELILMTARLWKRLGISEYLTLELNSIGNLEARENYKVALVDYLSQH 179

Query: 186 HRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                +    R ES P  I    S +   L D          D             D   
Sbjct: 180 FEQLDEDSQRRLESNPLRILDSKSAQTQALLDQAPALADYLDDESSDHFDELRGVLDAAG 239

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              SI  +        S    E   D L     V A G   G +   G K +        
Sbjct: 240 IGYSINPRLVRGLDYYSKTVFEWTTDQLGAQGTVCAGGRYDGLVAQLGGKPT-------- 291

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                        + +G  R+   V       + +            +  + A D   + 
Sbjct: 292 ---------PAIGFAMGLERLSLIV-------QVLNKVPDSINNNPDVYFVVAGD-KAKA 334

Query: 364 ACEKIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH- 420
           A  ++  +L        +     G    SQF  AD  G  + +I+G        V +K  
Sbjct: 335 AAFQLSEQLRDKIPSLKLQLHCGGGSFKSQFKKADKSGASIALIIGDNEAEQGVVNVKWL 394

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R    +  ++  E+ +      +
Sbjct: 395 RNDIEQNTVNNGELADLLVAALN 417


>gi|298206935|ref|YP_003715114.1| glycyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
 gi|83849569|gb|EAP87437.1| glycyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
          Length = 511

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 84/253 (33%), Gaps = 16/253 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       GE   +  + + +  +    +      +      +  A YA  
Sbjct: 260 FRMREFEQMEMQFFVRPGEELKWY-EHWKETRLNWHLSLGLGKENYRFHDHEKLAHYANA 318

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +            E + + +R            ++S      F    G+++   +    I
Sbjct: 319 AADIEFDFPFGFKELEGIHSRTDFDLKAHE---EHSGKKLQFFDPELGENYVPYVVETSI 375

Query: 320 GAMRVVAAVIE---------SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R+  AV+          + +    +  P  +AP K+++  +   D    +  E+I  
Sbjct: 376 GLDRMFLAVLSKSLVEEDLGNGNSRTVLKLPSILAPTKVAVFPLVKKD-GLPELAEQIVE 434

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L     +V +D+    +G ++   D  G P  + V    + D  V I+HR +  +  ++
Sbjct: 435 DLK-WDFNVLYDEKDA-VGKRYRRQDAAGTPFCITVDHDSLEDQTVTIRHRDSMEQSRVN 492

Query: 431 LEEVINYASHRFS 443
           + ++ +       
Sbjct: 493 ISDLKSIIGKALD 505


>gi|302039659|ref|YP_003799981.1| histidyl-tRNA synthetase [Candidatus Nitrospira defluvii]
 gi|300607723|emb|CBK44056.1| Histidyl-tRNA synthetase [Candidatus Nitrospira defluvii]
          Length = 418

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/407 (15%), Positives = 122/407 (29%), Gaps = 18/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    R+   R G  E+ VP  ++  L+  S     D   KEM   ADR+  ++   
Sbjct: 19  WRFIEDTARQWALRYGFQEIRVPIFETTTLFARSIGASTDIVEKEMYTFADRDGSSLTLR 78

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F  H ++    P  +      FR E        R R+F      SF ++ 
Sbjct: 79  PEGTAGTVRAFIEHNRAADPRPQKYCYAGPMFRHERPQAG---RLRQFHQFGVESFGVSD 135

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVLADTGETQVFCS 224
             +      +    L      GL          E       L   F+    +      C 
Sbjct: 136 PRADVEVISLLWRLLSDLTLPGLTLEINNLGYTEDRARYKPLLVAFLNGVQSRLCG-NCQ 194

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA----- 279
           +     P+   +    +  S      +     ++ +  H E++   L             
Sbjct: 195 RRIETNPLRVLDCKVPECRSATEDAPRLADSLSSEARDHFERVTSGLQSVGIPFHMNPRL 254

Query: 280 -RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RG++    +              + A G           +G   V A       +   +
Sbjct: 255 VRGLDY---YCLTAFEVTCSHLGAQNAVGAGGRYDGLVEQLGGAAVPAVGFAVGLERIAL 311

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           + P++VA   I  + + A           +   L + G     D     + +    AD L
Sbjct: 312 MLPETVAVPSIPRVYVAAFGTQAVGLGFTLLDELRRTGVPADMDFRAASLKAHLRQADRL 371

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
                +++G   V+     +++  T  +ED+ + ++ +    R  N 
Sbjct: 372 NALYTILLGDDEVTKGVATVRNMQTKAQEDVPIPDLASALRTRLVNR 418


>gi|291279934|ref|YP_003496769.1| histidyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
 gi|290754636|dbj|BAI81013.1| histidyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
          Length = 415

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/406 (15%), Positives = 120/406 (29%), Gaps = 21/406 (5%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMI 105
           +    +    ++     G  E+ +P L+  +L+V       D   KEM    DR+   + 
Sbjct: 17  RYWHLIEDSFKKLFPTFGYEEIKLPILEKTELFVRGIGDTTDIVEKEMFTFKDRDGSYLS 76

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P     +   F  +          +Y     FR E   +    R R+F      +F  
Sbjct: 77  LRPEGTASVVRAFIENKLYEPPAIRKYYYYGPMFRRERPQKG---RFRQFYQIGIEAFGS 133

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
                      +   +L  F       + + +   P       + ++       +  C  
Sbjct: 134 ESPLLDAEIIFLLYKFLNDFDLKDFLRMEINSIGCPECRPKYRDKLIQYFKNNYEDLCED 193

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEKLFDSLP------ENKR 276
                           + S   IV+             D H  KL   L           
Sbjct: 194 CKRRLEKNPLRILDCKVESCKVIVKDAPIILDNLCDVCDNHFRKLKSYLNQFGVEYNVNP 253

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F        +++  GA G+   +     G     +  A I      +
Sbjct: 254 YIVRGLDYYVRTAFEMVTDKLGASSAVGAGGRYDGLIKELGGPDIPGIGFA-IGVDRLVE 312

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAV 394
            I   + +   ++ +  I    +   +    I   L   G  V   +D     I S+   
Sbjct: 313 LIKMKNELKKDEVDIYIITF--EEFTEVGINISNELRDAGFKVNLGYDL--GSIKSEMKK 368

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           A+ L     +I+G   +S  K  +K   +G +  ++ +E+I +   
Sbjct: 369 ANRLNSRYVLIIGEDEISSGKFTLKDMNSGEQFKINRDEIIKFLQE 414


>gi|332157838|ref|YP_004423117.1| glycyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331033301|gb|AEC51113.1| glycyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 571

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 67/428 (15%), Positives = 139/428 (32%), Gaps = 73/428 (17%)

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           Y +   E      ++ KA +   T + +  +  R +  +   LPF  +QI   +R+E+ P
Sbjct: 143 YFNLMFETYIGPYKDKKAYLRPETAQGIFVNFKRLNAFARNKLPFGVFQIGKAYRNEISP 202

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH------------------- 186
           R G++R REF   +   F    E     ++++    L+++                    
Sbjct: 203 RQGMIRLREFTQAEVEIFFNPKEAEHPHFHEVKDEILKLYPIEHQVKDLGEIEVTAEEAV 262

Query: 187 RLGLKSIPMRAESGPIGGDL------------------SHEFIVLADTGETQVFCSKDFM 228
           + G       A    +   +                         ADT + +V+  +   
Sbjct: 263 KRGYLMNTFFAYYMVMIKRILLDIGLPEDKIRFRQQLPEERAHYSADTWDAEVYSERFGW 322

Query: 229 -DFPIPSENTDFDDIISLNSIVEQWTAP--------------------YAATSDVHNEKL 267
            +    +  TD+D    +       T                             + + +
Sbjct: 323 VECVGLAYRTDYDLKRHMKMSGADLTVMIHYDKPKIVKRLKVSLNMKSVGPKLKKNAKII 382

Query: 268 FDSLPENKRVSARGIEV-----GHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGI 319
            + L E  +   R +       G I   G + +       +  +   G+     +     
Sbjct: 383 NNKLKEMSQEELRKLVDEINRKGKIVINGFELTKEDFIIKEVEEKVTGEKIIPHVLEPSF 442

Query: 320 GAMRVVAAVIESSHD-----GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G  R    ++E+S          +     +AP +++++ + A  +        +Y RL +
Sbjct: 443 GIDRPFYLLLENSLTVDEDGRIYLKIKKDMAPIEVAVLPLVAK-EPLTSIAYNLYRRLQR 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V +D+    IG ++   D +G P  V + ++   D  V I+ R T  +  + +EEV
Sbjct: 502 DGFIVVYDEKD-SIGKRYMRYDEIGTPYCVTIDNQTPEDGTVTIRDRDTREQIRVKIEEV 560

Query: 435 INYASHRF 442
                   
Sbjct: 561 PKKLRQLI 568



 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 51/158 (32%), Gaps = 14/158 (8%)

Query: 23  HKLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             LM R G       I+  S+G Y + PLG      +   IRE   R G  E+  P +  
Sbjct: 12  QDLMRRRGFAWGSFEIYGGSRGFYDYGPLGATIKRKIERKIREAFIREGFFEIETPDITP 71

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +++ SG  + +   ++                EE          KS   +     +  
Sbjct: 72  EQVFIASGHVEKFVDPIVECKKC-GARFRADHLIEE--ALGIDVEGKSAEEMTKIIRENN 128

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           LK      P  G   S  F     +   + P   K +Y
Sbjct: 129 LKC-----PECGGELSDVFYFNLMFETYIGPYKDKKAY 161


>gi|300774783|ref|ZP_07084646.1| glycine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
 gi|300506598|gb|EFK37733.1| glycine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
          Length = 530

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 125/361 (34%), Gaps = 49/361 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +G ++   AD      +   T + +  +       S   LPF   QI   FR+E+  R  
Sbjct: 216 FGTKLGASADNAMDLYLRPETAQGIFVNFLNVQKTSRHKLPFGIAQIGKAFRNEIVARQF 275

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      Y +     L     LGL             GD ++
Sbjct: 276 IFRMREFEQMEMQFFVA-PGTELEFYEQWKQKRLNWHRALGL-------------GDENY 321

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            F             +    +FP                        +     +H+   F
Sbjct: 322 RFHDHEKLAHYANAAADIEFNFPF----------------------GFKELEGIHSRTDF 359

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D L  ++  S R ++    F+   +    +    + + G D              +   V
Sbjct: 360 D-LKAHEEFSGRKLQ----FFDPERNENYVPYVVETSVGLDRLFLSIFSHC----LRDEV 410

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E   +   +  P ++AP K +++ +   D    +  EKI+  L     ++F+++    I
Sbjct: 411 LEDGSERTVLSLPPALAPIKAAILPLMKKD-GLAEYAEKIFNDLK-YDFNLFYEEKDA-I 467

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           G ++   D +G P  + V    ++D  V I+ R T  +E + + E+        +N R +
Sbjct: 468 GKRYRRQDAIGTPYCITVDHDSLTDHTVTIRDRDTMQQERVPVSEL-RRIIDEKTNFRNL 526

Query: 449 L 449
           L
Sbjct: 527 L 527



 Score = 39.7 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 11/113 (9%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQN--RTGAIEMS 70
           ++ SH      G I   S        +Y +   G +  +N+     +         + + 
Sbjct: 27  KVISHAKE--YGFIFPSSEIYDGLSAVYDYGQNGAELKNNIKQYWWKAMVQLNENIVGID 84

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
              L     W  SG  D++   ++   D   +        E+    I     K
Sbjct: 85  SAILMHPTTWKASGHVDAFNDPLIDNKDSKKR-FRADVLVEDYCAKIEDKENK 136


>gi|229094014|ref|ZP_04225100.1| Glycyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|228689365|gb|EEL43182.1| Glycyl-tRNA synthetase [Bacillus cereus Rock3-42]
          Length = 156

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 62/160 (38%), Gaps = 13/160 (8%)

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDS 343
            ++S            + +        +GA RV  A +  +++ + +         +  +
Sbjct: 1   MEHSNEDFNYIDPQTNERYVPYCIEPSLGADRVTLAFLCDAYEEEQLENDSRTVLRFHPA 60

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP+K +++ +        +   +++A L      V +D+ G  IG ++   D +G P  
Sbjct: 61  LAPYKAAILPLSKK---LSEGATEVFAEL-AKDFMVDFDETG-SIGKRYRRQDEIGTPFC 115

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +      V D  V ++ R T  +  M + E+  +   +  
Sbjct: 116 ITYDFDSVEDKAVTVRDRDTMEQVRMPISELKGFLEKKIQ 155


>gi|295695734|ref|YP_003588972.1| histidyl-tRNA synthetase [Bacillus tusciae DSM 2912]
 gi|295411336|gb|ADG05828.1| histidyl-tRNA synthetase [Bacillus tusciae DSM 2912]
          Length = 424

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 123/417 (29%), Gaps = 21/417 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G++  LP        +    R    R G  E+  P L+  +L+        D   KEM  
Sbjct: 8   GMHDILPQEASLWHEIEEAARRICARYGFSEVRTPILEHTELFQRGVGENTDIVEKEMYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  ++M   P         +  H       P  ++ +   FR E        +  +F
Sbjct: 68  FNDRGGRSMTLRPEGTAGAVRAYVEHKFYGGPQPIKWFYLGPMFRYERPQAGRQRQFHQF 127

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVL 213
            ++        P                    +GL+ + +   S   P    +  E +  
Sbjct: 128 GVEVFG--VADPAVDAEVIALGLDFLE----DIGLEGLRLELNSVGCPQCRPMYRERLQA 181

Query: 214 ADTGETQVFCSKD---FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                 +  C          P+   +   +   +L     +           H+E +   
Sbjct: 182 YYRPLREQLCEDCRDRLERNPLRLLDCKRETCKALAERAPRIEEALCEECRAHDEGVHRH 241

Query: 271 LP------ENKRVSARGIEVGHIFYFGTKYS-LPMSATFKGADGKDHYVQMGSYGIGAMR 323
           L       E      RG++      F      +    T  G    +  V+          
Sbjct: 242 LEAAGIAYEINPRLVRGLDYYTRTAFEVVEDGIGAQGTVLGGGRYNGLVEELGGPSVPGI 301

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
             AA +E           +  +   + +  I   D+   +    +  RL  +GC      
Sbjct: 302 GFAAGLERLILALEQRRGEGTSETGVDVFGIALGDEASVELTGWL-RRLRALGCRAERGF 360

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            G+ + +Q   AD LG    +I+G +      V +K    G + ++ + EV ++   
Sbjct: 361 EGKSLKAQLKAADRLGARWALILGEEERRRGVVMVKDLAGGEQRELPVLEVESWWKE 417


>gi|258593719|emb|CBE70060.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS) [NC10
           bacterium 'Dutch sediment']
          Length = 419

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/412 (14%), Positives = 113/412 (27%), Gaps = 21/412 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP          A  R    R G  E+  P  +  +L+V       D   KEM  
Sbjct: 8   GAPDLLPQESARWQRAEATTRSLLQRYGYAEIRTPAFERTELFVRGIGEGTDIVEKEMYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+ D ++   P     +   +  H  + +      Y +   FR E        R R+F
Sbjct: 68  FTDQGDVSLTLRPEGTAPVVRAYLEHQIAAQCPLVKVYYLGPMFRRERPQSG---RYRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR----LGLKSIPMRAESGPIGGDLSHEFI 211
                 +              +  + +    R        +    A   P   D    ++
Sbjct: 125 HQIGVEAIGSDQPTVDAEVIDLLWALMVQEFRIPDLQLRLNSIGDAACRPTIRDRLSRYM 184

Query: 212 V------LADTGETQVFCSKDFMDFPIPS-ENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                    D            MD      +    +    L S+ E   A +A    + +
Sbjct: 185 ADRSSELCPDCQGRLKRNPLRIMDCKQEGCQRLVAEAPKPLESLCEACAAHFAEVRGLLD 244

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                   + + V  RG+E      F        +       G+   +     G     +
Sbjct: 245 LLKIPYTIDERLV--RGLEYYTKTAFEMINPRLGAQNALAGGGRYDGLIESMGGPSTPAM 302

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             AV             +  A   + +  I    Q  +     +   L + G     D  
Sbjct: 303 GFAVGLERVMASLPETSEESALHGVYVATIG---QAAQRTGMGLLQELRRRGIRGLMDLE 359

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +  Q   A+       +I+G + +   +  ++  +   +  ++L+ ++ 
Sbjct: 360 ARSLKGQMRQANKERVRYCLIMGDEELGRGQTTLRDMVKADQTSVALDRIVE 411


>gi|110806445|ref|YP_689965.1| histidyl-tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|110615993|gb|ABF04660.1| histidine tRNA synthetase [Shigella flexneri 5 str. 8401]
          Length = 414

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/418 (12%), Positives = 117/418 (27%), Gaps = 23/418 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLAD 98
            +LP        +   ++         E+ +P ++   L+  + G   D   KEM    D
Sbjct: 3   DYLPGETAIWQRIEGTLKNVLGSYCYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFED 62

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRSREF 155
           RN  ++   P            H   Y      +Y     + +   + R R       E 
Sbjct: 63  RNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEV 122

Query: 156 LMKDAYSFDLTPEGSKHSYNK---MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
                   D         + +   +F       + +G            +     H+  +
Sbjct: 123 FGLQGPDIDAELIMLTARWWRALGIFEHVTLELNSIGSLEARANYRDALVAFLEQHKEKL 182

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSL 271
             D            +D   P      +D  +L   +++ +   +A    +         
Sbjct: 183 DEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAYT 242

Query: 272 PENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
              + V         +F       G++ ++     + G   +       + G        
Sbjct: 243 VNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERL 302

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK--VGCDVFWDDM 384
            ++                   +  I + A     + A   +  RL    +G  +  +  
Sbjct: 303 VLLV-------QAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELLGVKLMTNHG 355

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G     QFA AD  G  + V++G   V++    +K   +G +  ++ + V  +     
Sbjct: 356 GGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLL 413


>gi|294782755|ref|ZP_06748081.1| histidine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294481396|gb|EFG29171.1| histidine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 412

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/405 (14%), Positives = 117/405 (28%), Gaps = 34/405 (8%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + +E     G      P  +  DL+        D   KEM    D+ D+++   P +
Sbjct: 24  ISNVTQEMFENYGYKFAKTPIFEETDLFKRGIGEATDVVEKEMYTFKDKGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEG 169
              M   +  +    +     FY     FR E        R REF       F + +P  
Sbjct: 84  TASMVRCYLENSIYAKEDVSRFYYNGSMFRYERPQAG---RQREFNQIGVEVFGEKSPIL 140

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                   +    ++        I       S  I  +   E    +   +    C    
Sbjct: 141 DAEVIAMGYNFLTKLGITDLEVKINSVGSKGSRTIYREKLVE-HFQSHLDDMCEDCKDRI 199

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENKRVSA 279
              P+   +   D                      H E++   L         +   V  
Sbjct: 200 NRNPLRLLDCKVDGDKDFYKSAPSIIDYLFEDERKHYEEVKKYLTIFGVKFTEDPTLVRG 259

Query: 280 RGIEVGHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                  +F       G++ ++     +     +     + ++G  A      ++     
Sbjct: 260 LDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAFGFAAGVERVMMLV---- 315

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                      P  +  + I        +   KI   L K    V+ D   + + S    
Sbjct: 316 --------EDYPKDVPDVYIAWLGDDTIETAMKIAETLRKNNAKVYVDYSSKGMKSHMKK 367

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           AD L     +I+G   ++   V +K   T  ++++ +EE+IN+  
Sbjct: 368 ADKLETKYCIILGEDELNKGIVLLKDFSTREQKEVKIEEIINHIK 412


>gi|326382138|ref|ZP_08203830.1| histidyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198868|gb|EGD56050.1| histidyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
          Length = 423

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/422 (15%), Positives = 125/422 (29%), Gaps = 24/422 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           GI  + P        V   +    +R G   + +P  +   L+        D   KEM  
Sbjct: 10  GIPDYFPPASADFLAVRNALTGAAHRAGYGHIELPIFEDTALFARGVGESTDVVSKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR  +++   P     +      H      LP         FR E RP+ G  R  + 
Sbjct: 70  FADRGGRSVTLRPEGTAGVMRAVIQHGLDRGQLPVKLCYAGPFFRYE-RPQAGRYRQLQ- 127

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
            +         P             Y R+        +    +    P   +   +F+  
Sbjct: 128 QVGIEAIGVDDPALDAEVIAVADEGYKRLGLSGYRLELTSLGDDTCRPQYREALQQFLFG 187

Query: 214 ADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            D  +      ++   +   D     +    +  + L+ + E     +       +    
Sbjct: 188 LDLDDATRARAEINPLRVLDDKRPEIKEATVNAPLMLDHLSESARDHFEQVRSHLDRLGV 247

Query: 269 DSLPENKRVSARGIEVGHIFYFGTK----YSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           D +   + V          F F        S            +    +    GIG    
Sbjct: 248 DYVINPRLVRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMRQIGGKQELSGIGFGIG 307

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WD 382
           V   + +       +  +         + + A  ++       + A+L   G  V   + 
Sbjct: 308 VDRTVLALEAEGVSVAGEGRVQVFGVPLGVAAKSELV-----AVAAQLRAAGVSVDLAYG 362

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D G + G+    AD  G  L +++G + + +  +E+K    G +  +SL+EV+       
Sbjct: 363 DRGLK-GAM-KAADRSGARLALVLGDRELEERTIELKDLSNGEQRKVSLDEVVPTVVAAL 420

Query: 443 SN 444
           + 
Sbjct: 421 AT 422


>gi|257386861|ref|YP_003176634.1| glycyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
 gi|257169168|gb|ACV46927.1| glycyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
          Length = 589

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/369 (11%), Positives = 101/369 (27%), Gaps = 26/369 (7%)

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           E+    + ++ A+                     +    T  ++        +P      
Sbjct: 218 ELFVDPEEDEPALEAVADVTAPFYPAADQEAADGQPYEATIREVVDDGVVG-KPWIAYYL 276

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                  ++   D+     +   +     Y         +      E G       ++  
Sbjct: 277 GVAKQWYESIGVDMDRFRFRQHLSGERAHYAADCWDAEAEVDGDWIELGGFAYRSDYDLS 336

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 + +    K + +       T   D+  L           A   +   E+  D+ 
Sbjct: 337 KHDSYSDEEFTVFKQYDEPVTVERATVDPDMSYLGPEFGGSAGAVADALEALAERDPDAF 396

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E++ V       G       + +           G+     +    +G  R +   ++ 
Sbjct: 397 DESEVVVEV---DGESHAVPVEKTNFGVEEVI-ESGEHITPHVVEPSLGIDRALYTALDH 452

Query: 332 SHDGKGII--------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           S+    +          P  VAP  + +  +   D    +    +  +L   G  V +DD
Sbjct: 453 SYREDEVDGEERTYLALPQEVAPTTVGVFPLMDRD-GMGEYARDLVEKLRAAGLAVTYDD 511

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSD-----------SKVEIKHRLTGIREDMSLE 432
            G  IG ++   D +G P  V V    + +             V ++ R T  ++ + + 
Sbjct: 512 SGA-IGRRYRRQDEVGTPFCVTVDYATLGEARDDEGEPAAPDTVTVRERDTTAQKRVPVA 570

Query: 433 EVINYASHR 441
           ++    +  
Sbjct: 571 DLPETLTAL 579



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 24  KLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQS 76
           +L  R G   Q +       G Y++ P G     N+    R     + G +E+  PT+  
Sbjct: 9   ELAKRRGFFLQSAGAYGGVSGFYTFGPSGAALKQNIEDTWRNRFAIQEGNMEVDAPTVMP 68

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKA 103
             ++  SG  D +   ++   +  +  
Sbjct: 69  EPVFEASGHLDGFDDMLVECPECGESH 95


>gi|332886158|gb|EGK06402.1| glycyl-tRNA synthetase [Dysgonomonas mossii DSM 22836]
          Length = 512

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 117/364 (32%), Gaps = 66/364 (18%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   AD   K  +   T + +  +           +PF   QI   FR+E+  R  
Sbjct: 197 FSTEMGSTADGAMKVYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEIVARQF 256

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      + K     ++    LG              GD  +
Sbjct: 257 IFRMREFEQMEMQFFVR-PGEELDWFAKWKEVRMKWHKSLGF-------------GDNKY 302

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            F             +    + P                        +     +H+   F
Sbjct: 303 RFHDHDKLAHYANAATDIEFEMPF----------------------GFKEVEGIHSRTDF 340

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     K                  +S      F     K +   +    IG  R+  + 
Sbjct: 341 DLASHEK------------------FSGKKLQYFDPELNKSYTPYVIETSIGVDRMFLST 382

Query: 329 IESSH---------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           + +++             +  P ++AP K++++ +   D    +   +I   L       
Sbjct: 383 LSAAYAEEVLEDGETRVVLRLPAALAPIKLAVLPLVKKD-GLPEKAREIIDTLK-FDFKC 440

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+    IG ++   D +G P  V V  + + D+ V I++R T  +E ++++++ +  +
Sbjct: 441 QYDEKD-SIGKRYRRQDAIGTPYCVTVDHQSLQDNTVTIRYRDTMQQERVAIDKLSDIIA 499

Query: 440 HRFS 443
            + S
Sbjct: 500 DKVS 503



 Score = 37.0 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 8/77 (10%)

Query: 30 GMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWV 81
          G + Q S        +Y +  +G +  +N+     +         + +         +W 
Sbjct: 17 GFVFQSSEIYDGLSAVYDYGQMGVELKNNIKKYWWDSMVLLNENVVGIDSAIFMHPTIWK 76

Query: 82 ESGRYDSYGKEMLRLAD 98
           SG  D++   ++   D
Sbjct: 77 ASGHVDAFNDPLIDNKD 93


>gi|301795047|emb|CBW37512.1| histidyl-tRNA synthetase [Streptococcus pneumoniae INV104]
          Length = 429

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 119/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIVMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQTLRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|53711703|ref|YP_097695.1| glycyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60679942|ref|YP_210086.1| glycyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|253564239|ref|ZP_04841696.1| glycyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|265765086|ref|ZP_06093361.1| glycyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|52214568|dbj|BAD47161.1| glycyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60491376|emb|CAH06124.1| putative glycyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|251948015|gb|EES88297.1| glycyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|263254470|gb|EEZ25904.1| glycyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|301161467|emb|CBW21007.1| putative glycyl-tRNA synthetase [Bacteroides fragilis 638R]
          Length = 513

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/478 (12%), Positives = 134/478 (28%), Gaps = 79/478 (16%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGK----- 91
           +Y +  +G +  +N+     +         + +         +W  SG  D++       
Sbjct: 33  VYDYGQMGVELKNNIKKYWWDSMVLLHENIVGIDSAIFMHPTIWKASGHVDAFNDPLIDN 92

Query: 92  --------------------------EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
                                     E+ + A R  +A             +     +  
Sbjct: 93  KDSKKRYRADVLIEDQLAKYDDKINKEVAKAAKRFGEAFDEAQFRSTNGRVLEHQAKRDA 152

Query: 126 RNLPFTFYQIQLKFRD--------ELRPRFGVMRSREFLMKDAYSFDLTP---------- 167
            +  F          +        E+       ++   + +    F              
Sbjct: 153 LHERFAKALNDNNLEELRQIIVDEEIACPISGTKNWTEVRQFNLMFSTDMGSTADGSMKI 212

Query: 168 EGSKHSYNKMFVSYLRIFH-----------RLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                +   +FV+YL +             ++G            I      E + +   
Sbjct: 213 YLRPETAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFF 272

Query: 217 GET--QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                ++   K + +  +                     A YA  +      +     E 
Sbjct: 273 VRPGSELEYFKKWKEIRLKWHKALGFGDDHYRFHDHDKLAHYANAATDIEFLMPFGFKEV 332

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV---------V 325
           + + +R            K+S      F     + +   +    IG  R+          
Sbjct: 333 EGIHSRTNFDLSQHE---KFSGKSIKYFDPELNESYTPYVIETSIGVDRMFLSIMSAAYC 389

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
              +E+      +  P ++AP K++++ +   D    +   +I   L        +D+  
Sbjct: 390 EEQLENGESRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIIDNLK-FHFHCQYDEKD 447

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  + R S
Sbjct: 448 -SIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMEQERVAISELNNIIADRVS 504


>gi|238758836|ref|ZP_04620009.1| Histidyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
 gi|238702944|gb|EEP95488.1| Histidyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
          Length = 424

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/420 (13%), Positives = 126/420 (30%), Gaps = 27/420 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTALWQRIEGSLKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHS----YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
               A  F L              + + +     H     +     ++     +    F+
Sbjct: 126 HQLGAEVFGLQGPDIDAELILLTARWWRALGITEHVQLELNSIGSLDARADYREALVTFL 185

Query: 212 VLA------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHN 264
                    D            +D   P      +D   L+  +++ +   +A   ++ +
Sbjct: 186 EQHVDKLDEDCKRRMYSNPLRVLDSKNPDVQLLLNDAPKLSDYLDEESKQHFAGLCELLD 245

Query: 265 EKLFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +         + V         +F       G + ++     + G    +      +  +
Sbjct: 246 QASIPYTVNERLVRGLDYYNRTVFEWVTNSLGAQGTVCAGGRYDGLV--EQLGGRATPAV 303

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G    +  ++             ++    +      A         E++   L  +    
Sbjct: 304 GFAMGLERLVLLVQAVNPEFKVPAIIDVYLISSGEGAQS-AAMQLAERVRDDLPNLKLMT 362

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +   G     Q   AD  G  + +I+G   ++  +V +K   +G +E ++  +V    +
Sbjct: 363 NY--GGGNFKKQITRADKWGARVALILGENEIAAKQVVVKDLRSGEQETLAQADVAVRLA 420


>gi|331265541|ref|YP_004325171.1| histidyl-tRNA synthetase [Streptococcus oralis Uo5]
 gi|326682213|emb|CBY99830.1| histidyl-tRNA synthetase [Streptococcus oralis Uo5]
          Length = 426

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 123/414 (29%), Gaps = 29/414 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            V         IF F     G   ++     + G        +   +G G       +I 
Sbjct: 257 MVRGLDYYNHTIFEFITEIEGNDLTVCAGGRYDGLVAYFGGPETAGFGFGLGVERLLLIL 316

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                K  +         + +  +     V      ++   L + G     D +  ++ +
Sbjct: 317 ----EKQGVTLPIENALDVYIAVLGDGANV---KALELVQALRQQGFKAERDYLNRKLKA 369

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           QF  AD+      + +G   V   +V +K+  T     +SL+ +    S  F  
Sbjct: 370 QFKSADVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLDAINQNFSEIFEK 423


>gi|160876253|ref|YP_001555569.1| histidyl-tRNA synthetase [Shewanella baltica OS195]
 gi|189082309|sp|A9KXK7|SYH_SHEB9 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|160861775|gb|ABX50309.1| histidyl-tRNA synthetase [Shewanella baltica OS195]
 gi|315268442|gb|ADT95295.1| histidyl-tRNA synthetase [Shewanella baltica OS678]
          Length = 426

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/423 (12%), Positives = 125/423 (29%), Gaps = 28/423 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        + A++R   +  G  E+  P +++ DL+  S G   D   KEM  
Sbjct: 10  GMNDILPTQSPLWQKMEAVLRSSVSAYGYSEIRTPIVENTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            AD N  ++   P            +   Y      +Y +   FR E   +    +  +F
Sbjct: 70  FADNNGDSLTLRPEGTASTVRAGNENGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFNQF 128

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            ++                  +++       H     +         +  D    F+   
Sbjct: 129 GVEVYGIGTADIDAEVLMLSARLWEKLGISDHVSLELNTLGDPAERAVYRDALIAFLEQH 188

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD----- 269
                +    +     P+   ++   ++ ++ +   +        S  H  +L +     
Sbjct: 189 KDALDED-SKRRMYSNPLRVLDSKDQNVQAILAGAPELMDFLGEESKTHFSQLRELLDAV 247

Query: 270 --------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                    L        R +        G++ ++     + G   +       + G   
Sbjct: 248 GIKYTINPRLVRGLDYYNRTVFEWVTSSLGSQGTVLAGGRYDGLVAQLGGKDTPAVGFAM 307

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDV 379
                 ++  + +    I  +      + +      D    +   KI   L        V
Sbjct: 308 GLERIVLLLETLELNKDIPSE------VDVYVTAMGDSCLVE-AIKIAQELRSALPNLKV 360

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYA 438
                G  +  Q   AD  G  + +++G   +++  V +KH R    ++ ++   +  + 
Sbjct: 361 MSHCGGGNVKKQMKRADKSGASVALLIGEDELAEGMVTVKHLRNDIEQQRVARSALGAFL 420

Query: 439 SHR 441
           +  
Sbjct: 421 AEL 423


>gi|114777430|ref|ZP_01452427.1| histidyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
 gi|114552212|gb|EAU54714.1| histidyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
          Length = 412

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/401 (14%), Positives = 106/401 (26%), Gaps = 32/401 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+        E+ +P L+  +L+V S     D   KEM    D+    +   
Sbjct: 23  WQRVEQAARKVFGSYAFSEVRMPVLEPVELFVRSVGEDTDIVSKEMYAFTDQGGDHICLR 82

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         +     +       +Y     FR E   +    R R+F       F    
Sbjct: 83  PEGTAGAVRAWLQGGLTRAGAQRWYYI-GPMFRRERPQKG---RLRQFQQIGVEMFSAPG 138

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHEFIVLADTGETQVFCSK 225
                               LG+  + M   S           + +V          C  
Sbjct: 139 PIEDAEI---LAMAHAFLSELGVPELKMEINSLGCNSCRPGYRDKLVTYLQARADRLC-- 193

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-- 283
                    E    + +  L+  V    A      ++    L D+   +     +G++  
Sbjct: 194 -----ETCVERITRNPMRVLDCKVASCQAELGDAPEM-VANLCDACDRHFTDVQKGLDAL 247

Query: 284 ------VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA----VIESSH 333
                    I      Y+           G    V  G    G +  +       I  + 
Sbjct: 248 AIPYSVNPRIVRGLDYYNRTAFEIVTDKLGAQGTVLAGGRYDGLVEELGGPATPAIGFAA 307

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
             + +             + + A  +  +         L K G  V     G     QF 
Sbjct: 308 GLERLAMLLDDDEATGPDMAVVALGEAVQGYALAQADLLRKAGLSVVH-CGGGSAKRQFK 366

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +AD  G     ++G   +    V +K+  TG ++ ++   V
Sbjct: 367 MADREGVRFVAVIGDDEMQAGTVMLKNMATGEQQSVATAAV 407


>gi|309799303|ref|ZP_07693550.1| histidyl-tRNA synthetase [Streptococcus infantis SK1302]
 gi|308117081|gb|EFO54510.1| histidyl-tRNA synthetase [Streptococcus infantis SK1302]
          Length = 426

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/409 (15%), Positives = 118/409 (28%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKDSLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENK 275
                      +D     +    ++  S+   ++  +  +        E L  + + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDYLDAESQAHFDAVRQMLENLGVAYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EDNELTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I    +       ++   L + G     D +  ++ +QF  A
Sbjct: 315 VLEKQGVALPIENALDVYIAVLGEGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKAIITLGESEVESGQVTVKNNQTREEVQVSLEAISQNFSEIFEK 423


>gi|289746410|ref|ZP_06505788.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289686938|gb|EFD54426.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
          Length = 337

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 262 IEEAQRRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIVRRELEDYSRRKHTEAGYQFV 320

Query: 70  SVPTLQSADLWVESGRY 86
           + P +  A L+  SG  
Sbjct: 321 NSPHITKAQLFHTSGHL 337


>gi|255010000|ref|ZP_05282126.1| glycyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313147793|ref|ZP_07809986.1| glycyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313136560|gb|EFR53920.1| glycyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
          Length = 513

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/478 (12%), Positives = 134/478 (28%), Gaps = 79/478 (16%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGK----- 91
           +Y +  +G +  +N+     +         + +         +W  SG  D++       
Sbjct: 33  VYDYGQMGVELKNNIKKYWWDSMVLLHENIVGIDSAIFMHPTIWKASGHVDAFNDPLIDN 92

Query: 92  --------------------------EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
                                     E+ + A R  +A             +     +  
Sbjct: 93  KDSKKRYRADVLIEDQLAKYDDKINKEVAKAAKRFGEAFDEAQFRSTNGRVLEHQAKRDA 152

Query: 126 RNLPFTFYQIQLKFRD--------ELRPRFGVMRSREFLMKDAYSFDLTP---------- 167
            +  F          +        E+       ++   + +    F              
Sbjct: 153 LHERFAKALNDNNLEELRQIIIDEEIACPISGTKNWTEVRQFNLMFSTDMGSTADGAMKI 212

Query: 168 EGSKHSYNKMFVSYLRIFH-----------RLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                +   +FV+YL +             ++G            I      E + +   
Sbjct: 213 YLRPETAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFF 272

Query: 217 GET--QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                ++   K + +  +                     A YA  +      +     E 
Sbjct: 273 VRPGSELEYFKKWKEIRLKWHKALGFGDDHYRFHDHDKLAHYANAATDIEFLMPFGFKEV 332

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV---------V 325
           + + +R            K+S      F     + +   +    IG  R+          
Sbjct: 333 EGIHSRTNFDLSQHE---KFSGKSIKYFDPELNESYTPYVIETSIGVDRMFLSIMSAAYC 389

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
              +E+      +  P ++AP K++++ +   D    +   +I   L        +D+  
Sbjct: 390 EEQLENGESRIVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIIDNLK-FHFHCQYDEKD 447

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             IG ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  + R S
Sbjct: 448 -SIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMEQERVAISELNNIIADRVS 504


>gi|215404566|ref|ZP_03416747.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
          Length = 342

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           I +   RD      +L L +    +   G+  + P G      +    R +    G   +
Sbjct: 267 IEEAQRRDHRKLGVELDLFS-FPDEIGSGLAVFHPKGGIVRRELEDYSRRKHTEAGYQFV 325

Query: 70  SVPTLQSADLWVESGRY 86
           + P +  A L+  SG  
Sbjct: 326 NSPHITKAQLFHTSGHL 342


>gi|293364647|ref|ZP_06611368.1| histidine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307702905|ref|ZP_07639853.1| histidyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
 gi|291316905|gb|EFE57337.1| histidine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307623585|gb|EFO02574.1| histidyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
          Length = 426

 Score = 92.1 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 118/409 (28%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+   ++    A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDAESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  S+       + I    +       ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVSLPIENALDVYIAVLGEGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|212544894|ref|XP_002152601.1| glycyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224]
 gi|210065570|gb|EEA19664.1| glycyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224]
          Length = 552

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 36/79 (45%)

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            KI   L ++G     DD G  IG ++A  D LG PL + +    V D  + ++ R +  
Sbjct: 453 RKISQNLRRLGISCRVDDSGASIGKRYARNDELGIPLGITIDFDTVKDDSITLRERDSTR 512

Query: 426 REDMSLEEVINYASHRFSN 444
           +   S++E+I        N
Sbjct: 513 QVRASIDEIIASIKSLVDN 531


>gi|333029668|ref|ZP_08457729.1| glycyl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
 gi|332740265|gb|EGJ70747.1| glycyl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
          Length = 512

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/474 (12%), Positives = 132/474 (27%), Gaps = 72/474 (15%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGK----- 91
           +Y +  +G +  +N+     +         + +         +W  SG  D++       
Sbjct: 33  VYDYGQMGVELKNNIKKYWWDSMVLLHENIVGIDSAIFMHPTIWKASGHVDAFNDPLIDN 92

Query: 92  --------------------------EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
                                     E+ + A R   A             +     +  
Sbjct: 93  KDSKKRYRADVLVEDQLAKYDEKIDKEVKKAAKRFGDAFDEEQFRATNPRVLANQEKRDA 152

Query: 126 RNLPFTFYQIQLKFRD--------ELRPRFGVMRSREFLMKDAYSFDLTPEGSKH----- 172
            +  F          +        E+       R+   + +    F      +       
Sbjct: 153 LHERFAKALNDNDLTELRQIIVDEEIVCPISGTRNWTEVRQFNLMFSTEMGSTAESAMKV 212

Query: 173 ----------SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
                       N M V            +   +A    I        +   +  E Q F
Sbjct: 213 YLRPETAQGIFVNYMNVQKSGRMKIPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFF 272

Query: 223 ---CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
               S+        ++   + + + L     ++          +     + L        
Sbjct: 273 VRPGSELEWFEMWKAQRLKWHENLGLGHENYRFHDHDKLAHYANAATDIEYLMPFGFKEV 332

Query: 280 RGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH---- 333
            GI     F      K+S      F     K +   +    IG  R+  +++  S     
Sbjct: 333 EGIHSRTDFDLSQHEKFSGKSIKYFDPELNKSYVPYVVETSIGLDRMFLSIMAGSFCEEE 392

Query: 334 ----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                   +  P ++AP K++++ +   D    +   +I   L     +  +D+    IG
Sbjct: 393 LENGSRVVLKLPAALAPVKLAVLPLVKKD-GLPEKAREIIDDLK-FHFNCQYDEKD-SIG 449

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            ++   D +G P  + V    + D+ V +++R T  +E +++ ++ N  + R S
Sbjct: 450 KRYRRQDAIGTPYCITVDHDSLKDNCVTLRNRDTMEQERVAIADLNNIIADRVS 503


>gi|257126611|ref|YP_003164725.1| histidyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
 gi|257050550|gb|ACV39734.1| histidyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
          Length = 417

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/404 (14%), Positives = 125/404 (30%), Gaps = 21/404 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            D +    +    + G   +  P L+  +L+        D   KEM    D+ ++ +   
Sbjct: 19  YDLIVDTAKSVFEKYGFERIITPILEETELFRRGVGDETDVVSKEMYEFVDKGNRNVTMR 78

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +        +    ++     +R E   +    R REF       F +  
Sbjct: 79  PEGTAGVVRAYLEAGFHKSSPIVKWFYHGPMYRYEAPQKG---RFREFHQMGIEMFGVRS 135

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADTGE 218
                   +M   +L      GL          ES     D    F+         D+  
Sbjct: 136 AYLDAEIIRMGCEFLEKLGITGLVVEINSLGNIESRKKYIDDLKAFMEKRLDKLSDDSKR 195

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-KLFDSLPENKRV 277
                    +D     +   F +   L   +++ +  Y   +  + E    + +  +K V
Sbjct: 196 RYTTNPLRALDSKDKGDQEQFINAPKLYDYLDEESKNYFENTKRYLELMNINYVVNDKLV 255

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                    +F              +               +G  +V      +  +   
Sbjct: 256 RGLDYYSDTVFEI-----KSNKLGSQATVLAGGRYDRLLEILGNAKVPGIGFAAGMERIA 310

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           ++  +++   K + I +   D+  ++   KI   L K G  V +D   +  G+Q   A+ 
Sbjct: 311 MLMDENLIAKKENKIYVIYFDET-KEYFVKIVEELRKNGIKVNFDYNPKSFGAQMKKANR 369

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                 +I+G     ++ + +K   TG +E  S E+V+ +   +
Sbjct: 370 ENADYVLILGEDEQKENVITMKKFSTGEQEKYSFEQVLKHFERK 413


>gi|307710978|ref|ZP_07647401.1| histidyl-tRNA synthetase [Streptococcus mitis SK321]
 gi|307617218|gb|EFN96395.1| histidyl-tRNA synthetase [Streptococcus mitis SK321]
          Length = 426

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 120/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVSYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I    Q       ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVTLPIENALDVYIAVLGQGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|324513749|gb|ADY45635.1| Prolyl-tRNA synthetase [Ascaris suum]
          Length = 287

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 73/276 (26%), Positives = 122/276 (44%), Gaps = 39/276 (14%)

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL-GLKSIPMRAESGP 201
           + PRFG++RSREFLM D YSFD++ E +  +Y  +  +Y  I       +   +RA++G 
Sbjct: 1   MNPRFGLLRSREFLMNDLYSFDISEEDALKTYRIVSQAYNHILQDTLQFEVHVVRADNGQ 60

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           IGG +SHE+ + + +GE  +                            E+ +    A   
Sbjct: 61  IGGAVSHEYHLPSTSGEDSIVYC-------------------------EKCSKGINAELA 95

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             +EK      E        +E+ H F  G  +S  + A ++        + M  YG+G 
Sbjct: 96  RRHEKPCSECTEECLKVIPSVEIAHTFQLGDLFSKSLGARYQN-----VAMVMNCYGLGI 150

Query: 322 MRVVAAVIES-SHDGKGIIWPDSVAPFKISLINIKAH---DQVCRDACEKIYARL---SK 374
            R++AA I+  S D   +  PD++ PFK+++I        D         +  +L   + 
Sbjct: 151 GRIMAAAIDVLSPDQNSLRLPDAICPFKMAIIPPADSSKIDPELASYAISLAQQLDSTTN 210

Query: 375 VGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSK 409
           +  +VF+DD     IG +  +A  LG P   +VGS+
Sbjct: 211 LHNEVFYDDRTDYSIGKRLLLATQLGIPHIAVVGSR 246


>gi|126440200|ref|YP_001059224.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 668]
 gi|166227952|sp|A3NA53|SYH_BURP6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|126219693|gb|ABN83199.1| histidine--tRNA ligase [Burkholderia pseudomallei 668]
          Length = 446

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 116/426 (27%), Gaps = 29/426 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + +   FR E   R    R R+F
Sbjct: 76  FVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYLGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 TGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               ++     +     P+   +T    +  +     Q        S  H + L   L  
Sbjct: 193 QHVDKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPQLIDFLGDVSRAHFDGLQRLLKA 252

Query: 274 NKR------VSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           N           RG++     +F + T           G        Q+G     A    
Sbjct: 253 NNLPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWA 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW---- 381
             V       K            + +++        R+    +  RL   G DV      
Sbjct: 313 MGVERILELLKEEHLVPEQEGVDVYVVHQG---DAAREQAFIVAERLRDTGLDVILHCSA 369

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTG------IREDMSLEEV 434
           D  G    SQ   AD  G    VI+G   V++  V +K  R TG      +++ + +E +
Sbjct: 370 DGAGASFKSQMKRADASGAAFAVILGEDEVANGTVSVKPLRGTGAEGEKNVQQSVPVESL 429

Query: 435 INYASH 440
             +  +
Sbjct: 430 TEFLIN 435


>gi|261405428|ref|YP_003241669.1| histidyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261281891|gb|ACX63862.1| histidyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 417

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/405 (14%), Positives = 118/405 (29%), Gaps = 13/405 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +    R+   R    E+  P  +  +L+        D   KEM    D+ 
Sbjct: 16  LPGAVEKWQFIEEKARDLCRRYNYREIRTPIFEQTELFERGVGETTDIVEKEMYTFKDKG 75

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D++M   P     +   +  +           Y +   FR E        R R+F     
Sbjct: 76  DRSMTLRPEGTAGVVRAYVQNKLYGEPDVTKLYYLGPMFRYERPQAG---RYRQFHQFGV 132

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F             +  S+ +     G+K+      +  +        +   +  +  
Sbjct: 133 EVFGTADPAIDAEVIALGYSFYKELGLNGVKAEINSVGTPEVRAAYRSALLAFLEPMKDS 192

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------EN 274
           +           P    D                        H EK+   L       E 
Sbjct: 193 LCSDCQSRMERNPLRVLDCKKDQGKFGDAPSILESLDEECSTHFEKVQGYLDAMGIEYEI 252

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                RG++      F  K     +    G  G+ + +     G     +   +      
Sbjct: 253 NPRLVRGLDYYTHTAFEFKAQGIGAIDTVGGGGRFNGLVGQIGGPDQPGIGFGIGLERIQ 312

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVC-RDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                   +++  K   + + A  +   R+  + IY  L + G     D +G ++ +Q  
Sbjct: 313 LILEHQGVNLSASKPLDVYLVALGEAAERELAKLIY-ELRRNGVSAERDYLGRKMKAQMK 371

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            AD L      I+G   ++  ++ +K   TG +  + L+ ++   
Sbjct: 372 SADRLQARYTAILGDDELARGEIALKSMETGEQRTVRLDSLVQEF 416


>gi|296158991|ref|ZP_06841819.1| histidyl-tRNA synthetase [Burkholderia sp. Ch1-1]
 gi|295890866|gb|EFG70656.1| histidyl-tRNA synthetase [Burkholderia sp. Ch1-1]
          Length = 446

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/424 (14%), Positives = 114/424 (26%), Gaps = 25/424 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +     ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQEAGLWEFFETTVKSMLRSYGYQNIRTPIIEHTQLFKRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FTDALNGENLTMRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M          +G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLMGIKLEINSLGLAHERAAHRVELIAHLE 192

Query: 216 TGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                +     +     P+   +T    +  +     +        S  H + L   L  
Sbjct: 193 KHMDVLDEEAKRRLYTNPLRVLDTKNPAMQEVAQNAPKLIDFLGEESRAHFDGLQRILKA 252

Query: 274 NKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           N           RG++  ++  F       + A    A G  +   +   G         
Sbjct: 253 NNIPFTINPRLVRGLDYYNLTVFEWVTDK-LGAQGTVAAGGRYDPLIEQLGGKPTAACGW 311

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW----DD 383
            +      + +     V   +   + +       R+    I  RL   G DV      D 
Sbjct: 312 AMGIERILELLKEEQLVPEDEGCDVYVVHQGDAAREEAFIIAERLRDTGLDVILHCSADG 371

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT------GIREDMSLEEVIN 436
                 SQ   AD  G    V++G   +++  V +K  R T        + ++  E++  
Sbjct: 372 QTASFKSQMKRADASGAAFAVVLGEDEIANGTVGVKPLRDTNANGGKNEQHNVPAEDLTE 431

Query: 437 YASH 440
           +  +
Sbjct: 432 FLIN 435


>gi|240102364|ref|YP_002958672.1| histidyl-tRNA synthetase [Thermococcus gammatolerans EJ3]
 gi|239909917|gb|ACS32808.1| Histidyl-tRNA synthetase (hisS) [Thermococcus gammatolerans EJ3]
          Length = 435

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 68/429 (15%), Positives = 126/429 (29%), Gaps = 41/429 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   +LP        V   IRE   R    E+  PT +  +L+   SG  +   K++   
Sbjct: 8   GTRDFLPEEMAKRRWVFERIREVFERYNFHEVLTPTFEYTELFKLRSG--EEVVKQLYAF 65

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +  ++ S  ++       +Y   +   +E +      R REF 
Sbjct: 66  LDKGGRDISLRPDMTSSVARLYVSAFQTAPKPIKWYYIANMFRYEEPQSG----RFREFW 121

Query: 157 MKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMR------AESGPIGGDLSHE 209
                        +          SYL         +I  R      A+   +  D+   
Sbjct: 122 QAGVELIGSDKVEADAEVIALFTESYLATGLEDFTVNIGDRVLLDEFAKMLGVKDDIGLM 181

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTD----FDDIISLNSIV-----EQWTAPYAATS 260
            ++      TQ    K   DF +  E+ +      +I      V     E +T+  A   
Sbjct: 182 RLIDKKDKLTQEEFVKALKDFGLSDEDVEKVLSLVEIKGEPDEVLPKAEELFTSEKAKAE 241

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----------DGKDH 310
                +L D L          I++G    F    S+   A                  + 
Sbjct: 242 IRRLYELVDLLDAYGVSKWIRIDLGIARGFDYYTSVVFEAIAPNDLGIGSIGGGGRYDNL 301

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
               G     A      +       +       +       +     D   R    ++ +
Sbjct: 302 IEVFGGKPTPATGFAIGIERLIPILEWKGLIPEIRLRPDVYVIPIGKDVELRKTAVEVVS 361

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVA-DLLG---FPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            L + G     +      G +   A D  G    P  V++G + + +  V I+   TG +
Sbjct: 362 ALRRAGVKADVELT----GRKLRKALDHAGRLNVPYVVLIGKRDLENGNVTIRDMETGEQ 417

Query: 427 EDMSLEEVI 435
             +  E ++
Sbjct: 418 RVVKKEGIV 426


>gi|229558641|sp|A3M212|SYH_ACIBT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|193076311|gb|ABO10956.2| histidyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
          Length = 430

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/421 (10%), Positives = 111/421 (26%), Gaps = 23/421 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP    A   +   +    +  G  ++ +P ++   L+  +     D   KEM    D+ 
Sbjct: 14  LPTQTAAWRRLEQHLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMYTFFDKG 73

Query: 101 DKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           +         E     +         R      + +   FR E   +    +  +F ++ 
Sbjct: 74  NPPESLTLRPEGTAGCVRALVEHNLLRGATPRVWYMGPMFRYEKPQKGRYRQFHQFGVET 133

Query: 160 AYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                            +++             +     E      +    F+       
Sbjct: 134 FGVATPDIEAEVILMTARLWKRMGVAHMVQLELNTLGEKEERTEYRNALVAFLNEHKDAL 193

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------- 271
            +    +     P+   ++  +    +     +        S  H ++L D L       
Sbjct: 194 DED-SQRRLTTNPLRILDSKIESTQKILENAPKLYDFLKEDSLSHFQQLQDYLTAAGIKF 252

Query: 272 ------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                         + +        G++ ++     + G  G+       S       + 
Sbjct: 253 VINQKLVRGLDYYNKTVFEWTTTALGSQGTVCGGGRYDGLVGQLKGKADQSVPAVGFGMG 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDD 383
              +    +              +          +     E++  +L        +    
Sbjct: 313 MERLLLLIEQVEQAEIVRDCEAFLVAEPAYQSKALV--LAEQLRDQLEAANSNIRIKT-G 369

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               + SQ   AD  G    +I+G +     ++ IK   T  +  ++L E++ +   +F+
Sbjct: 370 SQGSMKSQMKKADQAGAVYAIILGEREWEAQQLAIKELATAEQSQVALAELVPFLIEKFT 429

Query: 444 N 444
            
Sbjct: 430 K 430


>gi|169634404|ref|YP_001708140.1| histidyl-tRNA synthetase [Acinetobacter baumannii SDF]
 gi|229558637|sp|B0VKR7|SYH_ACIBS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|169153196|emb|CAP02286.1| histidyl-tRNA synthetase [Acinetobacter baumannii]
          Length = 430

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/421 (9%), Positives = 111/421 (26%), Gaps = 23/421 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP    A   +   +    +  G  ++ +P ++   L+  +     D   KEM    D+ 
Sbjct: 14  LPTQTAAWRRLEQHLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMYTFFDKG 73

Query: 101 DKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           +         E     +         R      + +   FR E   +    +  +F ++ 
Sbjct: 74  NPPESLTLRPEGTAGCVRALVEHNLLRGATPRVWYMGPMFRYEKPQKGRYRQFHQFGVET 133

Query: 160 AYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                            +++             +     +      +    F+       
Sbjct: 134 FGVATPDIDAELIMLTARLWKRMGVDHMVQLELNTLGETDERTEYRNALVAFLNEHKDAL 193

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------- 271
            +    +     P+   ++  +    +     +        S  H ++L D L       
Sbjct: 194 DED-SQRRLTTNPLRILDSKIESTQKILENAPKLHDFLKEDSLSHFQQLQDYLTAAGIKF 252

Query: 272 ------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                         + +        G++ ++     + G  G+       S       + 
Sbjct: 253 VINQKLVRGLDYYNKTVFEWTTTALGSQGTVCAGGRYDGLVGQLKGKADQSVPAVGFAMG 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDD 383
              +    +              +          +     E++  +L        +    
Sbjct: 313 MERLLLLLEQVEQAEIVRHCEAFLVAEPAYQSKALV--LAEQLRDQLEAANSNIRIKT-G 369

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               + SQ   AD  G    +I+G +     ++ +K   T  +  ++L E++ +   +F+
Sbjct: 370 SQSSMKSQMKKADQAGAVYAIILGEREWEAQQLAVKELATAEQSQVALAELVPFLIEKFT 429

Query: 444 N 444
            
Sbjct: 430 K 430


>gi|50422167|ref|XP_459646.1| DEHA2E07722p [Debaryomyces hansenii CBS767]
 gi|49655314|emb|CAG87877.1| DEHA2E07722p [Debaryomyces hansenii]
          Length = 655

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 86/289 (29%), Gaps = 19/289 (6%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                     +      +  +     +                 +    ++E +V+    
Sbjct: 356 MSNEMAHYAADCWDAELHTSYGWIECVGCADRSAY------DLSVHSARTNEKLVVRQPL 409

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
              V   K  ++     +             VE W     A +    E L   L EN ++
Sbjct: 410 PEPVLVEKYEVNIA---KKKFGPKFRKDAGTVENW---LLARTQCELEDLCKELNENNKI 463

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             +   + +     T++        +    ++    +     G  R++ ++ E     + 
Sbjct: 464 VFKIDSIPNSIELDTEFVKIEKVK-RTEHIREFTPNVIEPSFGIGRILYSIFEHQFWARP 522

Query: 338 IIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                +V      +   K      + +   +   +KI A L K       DD    IG +
Sbjct: 523 EDKDRTVLSLPPLVAPTKVLLVPLSSNAELQPIVKKISAFLRKEQVPFKVDDSSASIGKR 582

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +A  D LG P  + +    V D  V ++ R +  +   SLE+++     
Sbjct: 583 YARNDELGTPFGITIDFDSVKDESVTLRDRDSTKQVRGSLEDIVEAIKD 631



 Score = 50.5 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 16/103 (15%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHS-------KGIYSWLPLGQKALDNV 53
          M  S+  +P  +E        S + +L+       +        G+Y + P G     N+
Sbjct: 1  MSTSRTPIPFSRE--------SLEQVLKRRFFFAPAFEIYGGVSGLYDYGPPGCALQANI 52

Query: 54 NAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
              R+        +E+    L   ++   SG  D +   M R
Sbjct: 53 MDTWRKHFILEEDMLEVDCTMLTPHEVLKTSGHVDKFADWMCR 95


>gi|327400106|ref|YP_004340945.1| glycyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
 gi|327315614|gb|AEA46230.1| glycyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
          Length = 568

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 96/291 (32%), Gaps = 16/291 (5%)

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           +   +   + + +              ++  +      E + +AD G+  +     +   
Sbjct: 272 QAGIDDERLRFRQHRDDERAHYASDCWDAEALTSYGWIEIVGIADRGDYDLSRHMKYSGE 331

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +       + +      +         T     +K+ + L E+  ++   IE   +   
Sbjct: 332 DLSVFVPFKEPVKVKRRKIVPNMGKLGPTFRQKAKKIAEVL-ESMEIADDSIEAIEVEVD 390

Query: 291 GTKYSLPMSATFKGA-----DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI------- 338
           G K S+               G+     +     G  R+  A++E + D   +       
Sbjct: 391 GEKISVSREFFEVKEVEELIHGEKVTPHVIEPSFGLDRITFAILEHAFDKDIVDGEERRV 450

Query: 339 -IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                 +AP +++++ + +      +   +I   L K G    +DD G  IG ++   D 
Sbjct: 451 LRLKRWMAPVQVAVLPLLSKG-AFIEKSIEITFMLKKEGIFTEYDDSG-SIGRRYRRFDE 508

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           +G P  V V  +   D  V I+ R T  +  + +  +        S ++ +
Sbjct: 509 IGTPFCVTVDHQTFEDETVTIRDRDTTRQIRVHIGGLAPALRELLSTDKDI 559



 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/405 (13%), Positives = 108/405 (26%), Gaps = 52/405 (12%)

Query: 24  KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQS 76
           ++++R G + Q         G   + PLG      +  + RE       A+E+  PT+  
Sbjct: 6   EMLIRRGFLWQSFEIYGGMAGFIDYGPLGNGLRRRLENLWREFFVVNERAVEIDTPTVGI 65

Query: 77  ADLWVESGRYDSYGKEMLRLAD-----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
            ++++ SG   S+    +         R D  +      E   T      I    +L   
Sbjct: 66  EEVFIASGHATSFTDVAIECKKCGRVFRADHYIKEKLGIEADETVEAVKEILESFDLKCE 125

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
                     E  P   +  ++    K    +               ++           
Sbjct: 126 C----DGEFGEPTPFNLMFETKIGPGKGKKGYLRPETAQGIFIAFKRLADYFRDKLPFGV 181

Query: 192 SIPMRAESGPI-----------GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +   RA    I                 EF V    GE +      + D  +   +   +
Sbjct: 182 AQIGRAYRNEISPRQGVIRLREFNQAELEFFVH--PGEKKHPDFHIYADDEVKLLDKFGN 239

Query: 241 D-IISLNSIVEQWTAPYAATSDVHNEK----LFDSLPENKRVSARGIEVGHIFYFGTKYS 295
           + +I+L   VE+        +    +     L   + + +    +  +     Y    + 
Sbjct: 240 EHVITLKEAVEKGIIANEVIAYFIGKTRRFLLQAGIDDERLRFRQHRDDERAHYASDCWD 299

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                ++           +G    G   +   +  S  D    +        K   I   
Sbjct: 300 AEALTSY------GWIEIVGIADRGDYDLSRHMKYSGEDLSVFVPFKEPVKVKRRKIVPN 353

Query: 356 AHD--QVCRDACEKIYARLSKVG--------CDVFWDDMGEQIGS 390
                   R   +KI   L  +          +V  D  GE+I  
Sbjct: 354 MGKLGPTFRQKAKKIAEVLESMEIADDSIEAIEVEVD--GEKISV 396


>gi|319900290|ref|YP_004160018.1| glycyl-tRNA synthetase [Bacteroides helcogenes P 36-108]
 gi|319415321|gb|ADV42432.1| glycyl-tRNA synthetase [Bacteroides helcogenes P 36-108]
          Length = 513

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 112/355 (31%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   +D   K  +   T + +  +           +PF   QI   FR+E+  R  
Sbjct: 198 FSTEMGSTSDGAMKIYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      +     + L+    LG      R         L+H
Sbjct: 258 IFRMREFEQMEMQFFVK-PGTELEWFKTWKATRLKWHKALGFGDDHYRYHD---HDKLAH 313

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                 D      F  K         E         L+   +             NE   
Sbjct: 314 YANAATDIEFLMPFGFK-------EVEGIHSRTNFDLSQHEKFSGKNIKYFDPETNESYT 366

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             + E      R             +   MSA++                          
Sbjct: 367 PFVIETSIGVDR------------MFLSIMSASYCEE----------------------T 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P ++AP K++++ +   D    +   +I   L        +D+    I
Sbjct: 393 LENGETRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREIIDDLK-FHFHCQYDEKD-SI 449

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  + R S
Sbjct: 450 GKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMQQERVAISELNNIIADRVS 504


>gi|258649081|ref|ZP_05736550.1| glycine--tRNA ligase [Prevotella tannerae ATCC 51259]
 gi|260850716|gb|EEX70585.1| glycine--tRNA ligase [Prevotella tannerae ATCC 51259]
          Length = 513

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 117/364 (32%), Gaps = 66/364 (18%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  E+   A+      +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 198 FKTEVGSTAEGASAIYLRPETAQGIFVNYLNVQKTGRMKLPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      +N+     ++    LG  +   R           H
Sbjct: 258 IFRMREFEQMEMQFFVK-PGTEHEWFNRWKEWRMKWHQALGFGAECYRFHD--------H 308

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E +                                          A YA  +     K+ 
Sbjct: 309 EKL------------------------------------------AHYANAATDIEFKMP 326

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               E + + +R            ++S      F     + +        IG  R+  +V
Sbjct: 327 FGFKEVEGIHSRTDYDLRRHE---EFSGKSIKYFDPETNESYTPYDIETSIGVDRMFLSV 383

Query: 329 IESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           +  ++  + +           P ++AP K++++ +   D    +   +I   L     + 
Sbjct: 384 MCHAYTEEKLDNGETRVVLRLPAALAPVKLAVLPLVRKD-GLPEKAREIMNELK-FHFNC 441

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +++    IG ++  AD +G P  + +    + ++ V ++ R T  +E + +E++     
Sbjct: 442 KYEEKD-TIGKRYRRADAIGTPYCITIDHDTLKENTVTLRDRDTMTQERVPVEQLRALIE 500

Query: 440 HRFS 443
            + S
Sbjct: 501 DKVS 504


>gi|221487207|gb|EEE25453.1| glycyl-tRNA synthetase, putative [Toxoplasma gondii GT1]
          Length = 771

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 76/281 (27%), Gaps = 23/281 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E    AD     +          + +      
Sbjct: 468 FRQHLTSEMAHYAKDCWDAEVECSYGWVEVAGHADRSAFDLTSHSKVSKVDLVASRKFDS 527

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------------VGH 286
             I               T     + L D++ E        IE               G 
Sbjct: 528 PQIVEYVKYTPNKGLCGKTFKDRQQALHDAIEEKSDADRLEIEAALAAEGRYTLTLCTGE 587

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES--------SHDGKGI 338
           +F    +       T K    +     +     G  R++  ++E           + +  
Sbjct: 588 VFEISREMMKFEKTT-KKVSEESFVPAVIEPSFGIGRILHCIMEHAFRSRGIVDQEERCY 646

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +   ++      +I   + +    +  ++        G     D     IG ++A  D +
Sbjct: 647 MAFPAIIAPTKCIILPISSNPSFVELLQRARDACIARGISAKVDASTASIGKRYARNDEV 706

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           G P  + V  + + D  V ++ R +  +  +SL + ++  +
Sbjct: 707 GTPFAITVDFESLKDDTVTVRERDSMEQIRVSLSDAVDLVA 747



 Score = 50.9 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           G+Y + P G      V  + R+        +E+S P L    +   SG  D +   M++ 
Sbjct: 161 GLYDFGPPGCALKSAVEQLWRQHFVLAEDMLEVSGPCLTPHIVLKTSGHVDRFTDLMVKD 220

Query: 97  ADRNDKAMIYGPTHE 111
               D         E
Sbjct: 221 TVTQDCLRADKYLEE 235


>gi|148990507|ref|ZP_01821648.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|147924265|gb|EDK75361.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
          Length = 426

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 119/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENK 275
                      +D     +    +++ S+   +++ +  +        E L  D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENVPSILDFLDEESQTHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|315634912|ref|ZP_07890194.1| histidine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
 gi|315476464|gb|EFU67214.1| histidine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
          Length = 425

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/422 (13%), Positives = 126/422 (29%), Gaps = 32/422 (7%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V   +R   +  G  E+ +P ++S  L+  + G   D   KEM    DR+
Sbjct: 15  LPTETPLWQWVENKVRSVLSAYGYAEIRMPIVESTPLFARAIGEVTDVVEKEMFTFDDRD 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++++   P            H   Y      +Y +   FR E   +    R R+F     
Sbjct: 75  EESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWY-MGPMFRYERPQKG---RYRQFHQVGV 130

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F +           +     +        ++ + +           + +V        
Sbjct: 131 EIFGIPNPEIDAELIALTARLWKDLGIFDHVTLQLNSIGSLEARKNYRQALVDFLQNHID 190

Query: 221 VFCSKDFMDFPIPSENT------DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP-- 272
           +                         ++++    +  +    +         L D+L   
Sbjct: 191 ILDEDSKRRLTTNPLRILDSKDQRVQEVLNDAPKLHDYLDDDSREHFAQLCALLDNLGIQ 250

Query: 273 -ENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
            E  +   RG++     +F       G + ++     + G    +      + G+G    
Sbjct: 251 YEINQKLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLV--EQLGGHATSGVGFAMG 308

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWD 382
           +  ++    +    I   S          I    +    A   +  +L            
Sbjct: 309 LERLVLLVQEVNTQITLPSAVDIY-----IVYQGEGTTVAAFNLAEKLRSELPHLRTLLH 363

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHR 441
             G     QF  AD  G  L +++G   V + +V +K+      +  ++L ++IN+  + 
Sbjct: 364 CSGGNFKKQFKRADKSGAKLALVIGEDEVKNQQVVVKNLLQHSEQAVVALGDIINHIQNT 423

Query: 442 FS 443
           F 
Sbjct: 424 FK 425


>gi|18977999|ref|NP_579356.1| glycyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
 gi|32171572|sp|Q8U0G2|SYG_PYRFU RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|18893778|gb|AAL81751.1| glycyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
          Length = 568

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +       +IY  L K G  V +D+    IG ++   D +G P  V V ++   D  V 
Sbjct: 483 KEPLTTIAYEIYRNLQKEGFIVVYDEKD-SIGKRYMRYDEIGTPYCVTVDNQTPEDGTVT 541

Query: 418 IKHRLTGIREDMSLEEVINYASHRF 442
           I+ R T  +  + +EEV        
Sbjct: 542 IRDRDTREQIRVKIEEVPRKLKELI 566



 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/379 (12%), Positives = 105/379 (27%), Gaps = 29/379 (7%)

Query: 23  HKLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             LM R G       I+  ++G Y + PLG      +   IRE   R G  E+  P +  
Sbjct: 10  QDLMRRRGFAWGSFEIYGGARGFYDYGPLGATIKRKIEKKIREAFIREGFFEIETPDITP 69

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +++ SG  + +   ++       +        E +  D+     +    +        
Sbjct: 70  EQVFIASGHVEKFVDPLVECKKCGARFRADHLIEETLGIDVEGKSAEEMTKIIREHNIRC 129

Query: 137 LKFRDELRPRFGVMRSREFLM---KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
            +   EL   +      E  +   KD  ++           N   ++             
Sbjct: 130 PECGGELSDVWYFNLMFETYIGPYKDKKAYLRPETAQGIFVNFKRLNAFARNKLPFGVFQ 189

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-----------NTDFDDI 242
             +A    I        +      E ++F + +  + P   E                D+
Sbjct: 190 IGKAYRNEISPRQGMIRLREFTQAEVEIFFNPNETEHPHFDEVKDEVLRLYPIEHQLKDL 249

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF--YFGTKYSLPMSA 300
             +    E+        +       +  + +   +     E    F      + +   + 
Sbjct: 250 GMIELTAEEAVKKGYVMNTFF--AYYMVMIKRILLDIGIPEDKIRFRQQLPEERAHYSAD 307

Query: 301 TFKGADGKDHYVQMGSYGIGA---MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
           T+      + +  +   G+       +   +  S  D   +I  D     K   + +   
Sbjct: 308 TWDAEIYSERFGWVECVGLAYRTDYDLSRHMKMSGADLTVMIHYDKPKIVKKLNVTLNMK 367

Query: 358 D--QVCRDACEKIYARLSK 374
                 ++  ++I  +L  
Sbjct: 368 KVGPKLKEKVKEINEKLKS 386


>gi|284053071|ref|ZP_06383281.1| threonyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 103

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 35/83 (42%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               RD  + I   L +       D+ GE++G Q    +L   P+ V++G + + +  + 
Sbjct: 12  SDRFRDYAKSIVQSLKQQNIRAEVDNTGERLGKQIRACELEKIPVTVVIGQRELDNQSLS 71

Query: 418 IKHRLTGIREDMSLEEVINYASH 440
           ++ R  G    M+L ++      
Sbjct: 72  VRTRSRGDIGTMTLPQLTEEILK 94


>gi|237742494|ref|ZP_04572975.1| histidyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|229430142|gb|EEO40354.1| histidyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
          Length = 412

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/402 (15%), Positives = 114/402 (28%), Gaps = 28/402 (6%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + ++     G      P  +  +L+        D   KEM    D+ D+++   P +
Sbjct: 24  ISNVTQKMFENYGYKFAKTPIFEETELFKRGIGEATDVVEKEMYTFKDKGDRSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              M   +  +    +     FY     FR E        R REF       F       
Sbjct: 84  TASMVRCYLENSIYAKEDVSRFYYNGSMFRYERPQAG---RQREFNQIGVEVFGEKSPIL 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF-----IVLADTGETQVFCSK 225
                 M  + L    +LG+  + ++  S    G  +           +   +    C  
Sbjct: 141 DAEVIAMGYNLL---TKLGVTDLEVKINSVGSKGSRTVYREKLVEHFKSHLDDMCEDCRD 197

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENKRV 277
                P+   +   D                      H E++   L         +   V
Sbjct: 198 RINRNPLRLLDCKVDGEKDFYKSAPSIIDYLFEDERKHYEEVKKYLTIFGIKYTEDPTLV 257

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                    +F   T   L    T  G    D+ ++            AA +E       
Sbjct: 258 RGLDYYSSTVFEIVTNK-LGSQGTVLGGGRYDNLLKELGDKEIPAVGFAAGVERIMMLID 316

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
               D    +   L           +   KI   L K    V+ D   + + +    AD 
Sbjct: 317 DYPRDIPDVYIAWLG------DNTVETAMKIAEDLRKNDIKVYVDYSSKGMKAHMKKADK 370

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           L     +I+G   ++   V +K   T  ++++ +E++ N   
Sbjct: 371 LETKYCIILGEDELNKGVVLLKDFSTREQKEVKIEDITNQIK 412


>gi|317496045|ref|ZP_07954405.1| histidyl-tRNA synthetase [Gemella moribillum M424]
 gi|316913620|gb|EFV35106.1| histidyl-tRNA synthetase [Gemella moribillum M424]
          Length = 426

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/417 (13%), Positives = 129/417 (30%), Gaps = 16/417 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP   +    +   +R+  +     E+  P  +S +L+        D   KEM    D++
Sbjct: 13  LPEESRKWQYIEEKLRKISSDFCYEEIRTPMFESTELFSRGVGDTTDIVQKEMYTFMDKS 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNL-PFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           D+++   P         +  +    + + P   Y +   FR E + +    R R+F+   
Sbjct: 73  DRSLTLRPEGTAGTVRSYIENKLFAQTIQPQKLYYVGPMFRYERKQKG---RYRQFVQYG 129

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGL-------KSIPMRAESGPIGGDLSHEFI 211
                D +P+      +  +  Y                     RA +  +         
Sbjct: 130 VEVIGDESPKIDAEVISLAYNIYKIFGIENIKVSINSLGNPEERRAYNEALIKHFEPRIH 189

Query: 212 VLADTGETQVFCSKD-FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              +    +++ +    +D  + + +        L   + + +  Y A    H + L   
Sbjct: 190 EFDEDCNNRLYKNPMRILDCKVDANHELVKTAPRLLEYLGEESKAYFAEVLRHLDALGVK 249

Query: 271 L-PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              ++  V          F            T  G    +  V++         +  A+ 
Sbjct: 250 YEIDHNLVRGLDYYTHTAFEIMIDNPEVELKTLCGGGRYNGLVKLLDGPEDKKGIGFALS 309

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                        ++       + + +  +   DA  K+   L   G     D   +++ 
Sbjct: 310 IERLLLALESENITLPIDDTIDLFVVSMGEKAGDAAVKLTNDLRLAGYKAQNDYFDKKMK 369

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +Q  +AD     L +I+G   + + +  +K   +  +E +  E +I Y   +    +
Sbjct: 370 AQMKIADRYKAKLSIIIGESELENDEYVVKDMESFNQETVKRENIIKYLEEKLRGEK 426


>gi|315230062|ref|YP_004070498.1| glycyl-tRNA synthetase [Thermococcus barophilus MP]
 gi|315183090|gb|ADT83275.1| glycyl-tRNA synthetase [Thermococcus barophilus MP]
          Length = 570

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/428 (14%), Positives = 127/428 (29%), Gaps = 73/428 (17%)

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           Y +   E      ++ K  +   T + +  +  R +  +   LPF  +QI   +R+E+ P
Sbjct: 141 YFNLMFETYIGPYKDKKGYLRPETAQGIFVNFKRLNAFARNKLPFGVFQIGKAYRNEISP 200

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNK-------------------MFVSYLRIFH 186
           R G++R REF   +   F    E     +++                   M    L    
Sbjct: 201 RQGMIRLREFTQAEVEIFFNPKETEHPHFDEVKDEVVRLYPIEHQLKNLGMIEVTLEEAV 260

Query: 187 RLGLKSIPMRAESGPIGGDL------------------SHEFIVLADTGETQVFCSKDFM 228
           + G       A    +   +                          DT + +++  +   
Sbjct: 261 KKGYVMNTFFAYYMAMVKRILLDIGIPEKAIRFRQQLPEERAHYSKDTWDVEIYSERFGW 320

Query: 229 -DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            +    +   D+D    +       T           ++L  SL   +       +   I
Sbjct: 321 IECVGIAYRGDYDLSRHMKMSGADLTVMIHYDEPKTVKRLKVSLNMKRVGPKLKKDAKRI 380

Query: 288 FYFGTKYSLPMSATFKGA----------------------------DGKDHYVQMGSYGI 319
                + S                                       G+     +     
Sbjct: 381 NEKLKEMSEEELRKLVEELEEEGKVSIEGYELEKEDFIIKEVEEKITGEKIVPHVLEPSF 440

Query: 320 GAMRVVAAVIESSHD-----GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G  R    ++E+S          +     +AP +++++ + A  +        ++  L K
Sbjct: 441 GIDRPFYLLLENSLTIDEDGRIYLKIKKDMAPIEVAVLPLVAK-EPLTTIAYNVFRTLQK 499

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G    +D+    IG ++A  D +G P  V + ++   D+ V I+ R T  +  + ++E+
Sbjct: 500 AGFIAVYDEKD-TIGRRYARYDEIGTPYCVTIDNQTPEDNTVTIRDRDTREQIRVKIDEL 558

Query: 435 INYASHRF 442
                   
Sbjct: 559 PEKLKELI 566



 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/383 (13%), Positives = 111/383 (28%), Gaps = 30/383 (7%)

Query: 19  EIASHKLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVP 72
           EI S  LM R G       I+  ++G Y + PLG      +   IRE   R G  E+  P
Sbjct: 7   EILS-DLMRRRGFAWGSFEIYGGARGFYDYGPLGATIKRKIERKIREAFQREGFFELETP 65

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTF 132
            +   ++++ SG  + +   ++     + +        E +  D+     +    +    
Sbjct: 66  DITPEEVFIASGHVEKFVDPLVECTQCHTRYRADHLIEESLDIDVEGLSAEELTKIIKEN 125

Query: 133 YQIQLKFRDELRPRFGVMRSREFLM---KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG 189
                +   EL   +      E  +   KD   +           N   ++         
Sbjct: 126 GIKCPQCGGELGDVWYFNLMFETYIGPYKDKKGYLRPETAQGIFVNFKRLNAFARNKLPF 185

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-----------NTD 238
                 +A    I        +      E ++F +    + P   E              
Sbjct: 186 GVFQIGKAYRNEISPRQGMIRLREFTQAEVEIFFNPKETEHPHFDEVKDEVVRLYPIEHQ 245

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF--YFGTKYSL 296
             ++  +   +E+        +       + ++ +   +     E    F      + + 
Sbjct: 246 LKNLGMIEVTLEEAVKKGYVMNTFF--AYYMAMVKRILLDIGIPEKAIRFRQQLPEERAH 303

Query: 297 PMSATFKGADGKDHYVQMGSYGI---GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
               T+      + +  +   GI   G   +   +  S  D   +I  D     K   ++
Sbjct: 304 YSKDTWDVEIYSERFGWIECVGIAYRGDYDLSRHMKMSGADLTVMIHYDEPKTVKRLKVS 363

Query: 354 IKAH--DQVCRDACEKIYARLSK 374
           +         +   ++I  +L +
Sbjct: 364 LNMKRVGPKLKKDAKRINEKLKE 386


>gi|189464411|ref|ZP_03013196.1| hypothetical protein BACINT_00752 [Bacteroides intestinalis DSM
           17393]
 gi|189438201|gb|EDV07186.1| hypothetical protein BACINT_00752 [Bacteroides intestinalis DSM
           17393]
          Length = 513

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/355 (18%), Positives = 112/355 (31%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   +D   K  +   T + +  +           +PF   QI   FR+E+  R  
Sbjct: 198 FSTEMGSTSDGAMKIYLRPETAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      + K     L+    LG      R         L+H
Sbjct: 258 IFRMREFEQMEMQFFVK-PGTELDWFKKWKEIRLKWHKALGFGDDHYRYHD---HDKLAH 313

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                 D      F  K         E         L+   +             NE   
Sbjct: 314 YANAATDIEFLMPFGFK-------EVEGIHSRTNFDLSQHEKFSGKNIKYFDPETNESYT 366

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             + E      R             +   MSA++                          
Sbjct: 367 PYVIETSIGVDR------------MFLSIMSASYCEE----------------------Q 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +ES      +  P ++AP K++++ +   D    +   +I   L        +D+    I
Sbjct: 393 LESGESRVVLRLPAALAPVKLAVMPLVKKD-GLPEKAREIIDSLK-FHFHCQYDEKD-SI 449

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  + R S
Sbjct: 450 GKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMQQERVAIAELNNIIADRVS 504


>gi|152980083|ref|YP_001353816.1| histidyl-tRNA synthetase [Janthinobacterium sp. Marseille]
 gi|151280160|gb|ABR88570.1| histidyl-tRNA synthetase [Janthinobacterium sp. Marseille]
          Length = 449

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/435 (14%), Positives = 114/435 (26%), Gaps = 46/435 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +     +       G  ++  P ++   L+    G   D   KEM  
Sbjct: 15  GMNDILPADAPLWELFENTVHTVLKSYGFQQIRTPIVEPTALFARGLGEVTDIVEKEMYS 74

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   +     FR E   R    R R+F
Sbjct: 75  FTDSMNGDQLTLRPECTAGVVRAALEHNLTYDGPKRLWYAGPMFRHERPQRG---RYRQF 131

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES-------GPIGGDLSH 208
               A +              M       +  LGL+ + +   S            DL  
Sbjct: 132 HQIGAEAIGFAGPDIDAELIMMCQRL---WDDLGLQDVRLELNSIGNAEERNKHRADLIA 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE--- 265
            F   AD  +T+    K     P+   +T    +  + +   +        S  H E   
Sbjct: 189 YFEKNADLLDTEA--QKRLHSNPLRILDTKNPTMQDMVNAAPKLLDYLGEESRAHFEGVQ 246

Query: 266 ----------KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                      +   L        R +        G++ ++          G  +   + 
Sbjct: 247 KILRHNAIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVC--------GGGRYDPLVE 298

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            +G          +      + +             + I    +  +     +  RL   
Sbjct: 299 MFGGKPTPACGFAMGVERLLELMKASGEQFAPNQCDVYIVHQGEEAQLQASVVAERLRDA 358

Query: 376 GCDVFWDDMGEQ-IG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT----GIRE 427
           G DV         IG   SQ   AD  G    VI+G   ++     +K        G + 
Sbjct: 359 GLDVVLHCAAATGIGSFKSQMKRADGSGAAYAVIIGEDEIAQGTAVVKEMRNAEAAGNQA 418

Query: 428 DMSLEEVINYASHRF 442
            +  E + +Y   + 
Sbjct: 419 SVPFEGIADYLVDQI 433


>gi|332520154|ref|ZP_08396618.1| glycyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
 gi|332044713|gb|EGI80907.1| glycyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
          Length = 523

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 88/266 (33%), Gaps = 19/266 (7%)

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           R  + +                 FI     GE      + + +  +    +      +  
Sbjct: 259 RNEIVARQFIFRMREFEQMEMQFFIKPGTQGEW----YEHWKETRMKWHLSLGMGAENYR 314

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
               +  A YA  +     K      E + + +R            ++S      F   D
Sbjct: 315 FHDHEKLAHYADAAADIEFKFPFGFKELEGIHSRTDFDLKAHE---EHSGKKLQYFDHED 371

Query: 307 GKDHYVQMGSYGIGAMRVVAAV---------IESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   +    IG  R+  AV         +E++     +  P  +APFK +++ +   
Sbjct: 372 NASYTPYVLETSIGLDRMFLAVFSNALVEEELENNTTRTVLKLPAVLAPFKAAILPLVKK 431

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D    D  +KI   L     +V +D+    +G ++   D  G P  + V    + D+ V 
Sbjct: 432 D-GLPDVAKKIVEDLK-WDFNVTYDEKDA-VGRRYRRQDANGTPFCITVDHDTLEDNTVT 488

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           I+HR T  +  + +E++ +       
Sbjct: 489 IRHRDTMEQSRVKIEDLKSIIKKEVD 514


>gi|319937181|ref|ZP_08011588.1| histidyl-tRNA synthetase [Coprobacillus sp. 29_1]
 gi|319807547|gb|EFW04140.1| histidyl-tRNA synthetase [Coprobacillus sp. 29_1]
          Length = 426

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/411 (13%), Positives = 123/411 (29%), Gaps = 27/411 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  ++R         EM  P  +  +L+  +     D   KEM    D+  ++M   
Sbjct: 20  WQQLEQLLRTICANYNVKEMRTPIFEHTELFTRAVGDTTDVVTKEMYTFEDKKGRSMTLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLP-FTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYS 162
           P     +   +  +           +Y +   FR E       R       E +  ++  
Sbjct: 80  PEGTAGIARSYVENKLYALPEKLQKYYYMGPMFRYERPQSGRQRQFHQFGVEMIGLESPY 139

Query: 163 FDLTPEGSKHSY--------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            D+       +           + ++ L            ++    P+  DL ++     
Sbjct: 140 VDVEAMVLAVTVVEALGLQDITLHINSLGDEESRDAYREALKKHFEPVIKDLCYDCQQRY 199

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +    ++   K   + P        D   +++ + E   A +    ++ ++   + + + 
Sbjct: 200 EKNPLRILDCKVDREHPF-----MNDAPHTIDYLSENAKAHFDKVCELLDDLEIEYVIDT 254

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
             V         +F   +      +    G  G+ + +     G     V  A       
Sbjct: 255 NLVRGLDYYSHTVFEVISDDPKLGAGATVGGGGRYNTLISELGGPDVPGVGFAFGMERLL 314

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD--DMGEQIGSQF 392
                         + ++ +       +D   +I   L   G     D  D G + G QF
Sbjct: 315 IANSDVDAEEDGLDVYVMPLGN---EAKDLAMQIVTMLRANGFTCDMDQCDRGLK-G-QF 369

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             AD       +I+G + V    V +K   +  + ++ LE ++ +    + 
Sbjct: 370 KSADRFHAHFSMIIGEEEVKKEVVNMKCNHSKEQNEVLLENIVAFIEAHYE 420


>gi|226950484|ref|YP_002805575.1| histidine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
 gi|254782324|sp|C1FKE6|SYH_CLOBJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|226843187|gb|ACO85853.1| histidine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
          Length = 415

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/406 (14%), Positives = 115/406 (28%), Gaps = 29/406 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    R      G  E+  P  +  +L+        D   KEM    D+  +++   
Sbjct: 20  WQYLENKFRNIAADFGCREIRTPVFEYTELFQRGVGETTDVVQKEMYTFEDKAGRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F          P   Y      R E   +    R R+        F    
Sbjct: 80  PEGTSPAVRAFVEGRLFNETQPTKMYYFTPVMRYENVQKG---RLRQHHQFGIEIFGAKD 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                    + V   +     G++         P      +E +    +      CS   
Sbjct: 137 ASVDAEVISIPVGIYKELGVEGVELNINSIGC-PKCRKTYNEALKKYLSKNYDKLCSTCK 195

Query: 228 MDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEKLFDSLP------ENKRVS 278
             F           + +   IV+               H E L + L       +     
Sbjct: 196 TRFDKNPLRILDCKVDTCKEIVKDAPIILDYICGECKEHFESLKNYLDVLNINYKIDPFI 255

Query: 279 ARGIEV--GHIFYFGTKYSLPM---SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            RG++     +F F T            +   +     +    +G+G  R++  + E + 
Sbjct: 256 VRGLDYYSKTVFEFITDDITICAGGRYDYLIEEIGGPSMPAVGFGMGMERLLLTLQEKAI 315

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           +          A   + L N+       +    K+   L         D MG+ + +Q  
Sbjct: 316 EI------PEEAYVDLYLGNMGDK---AKLEVLKLAKELRDRHIKCEIDHMGKSVKAQMK 366

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            A+ +G    +++G + ++  K  IK    G + ++ ++++     
Sbjct: 367 YANRIGAKYSMVLGEEELNTGKATIKKMEDGQQIEVDIKDMDTLIK 412


>gi|307128383|ref|YP_003880414.1| histidyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
 gi|306485445|gb|ADM92314.1| histidyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
          Length = 429

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 118/409 (28%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENK 275
                      +D     +    ++  S+   +++ +  +        E L  D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQTHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFATKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|332365004|gb|EGJ42769.1| histidine--tRNA ligase [Streptococcus sanguinis SK355]
          Length = 426

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/407 (14%), Positives = 121/407 (29%), Gaps = 35/407 (8%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEDFARKTFKKYNYGEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
           +   +     +M     + F  +G+ ++ +   S       +                  
Sbjct: 137 SNPATD---VEMIAMAAQFFKDIGITNVSLELNSLGNPESRAAYRQALIDYLTPLKASLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D   P +    +   S+   +++ ++ Y A      E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESSTYFAAVRSMLETLQIPYII 253

Query: 273 ENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
               V         IF F     G++ ++     + G        +    G G       
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAYFGGPETPGVGFGMGLERLL 313

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++      K  +         + +  + A          ++   L   G     D +  +
Sbjct: 314 LVL----DKQGVKLPIEIALDVYVAVLGAG---ANGRALELVQALRAQGFAAERDYLDRK 366

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + +QF  AD+      + +G   V   +V +K+        +SL+++
Sbjct: 367 LKAQFKSADIFKAKTLITLGESEVESGQVTVKNNHNREEITVSLDQI 413


>gi|169797242|ref|YP_001715035.1| histidyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|215484683|ref|YP_002326918.1| histidyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|239500764|ref|ZP_04660074.1| histidyl-tRNA synthetase [Acinetobacter baumannii AB900]
 gi|260556124|ref|ZP_05828343.1| histidyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
 gi|301509973|ref|ZP_07235210.1| histidyl-tRNA synthetase [Acinetobacter baumannii AB058]
 gi|332851253|ref|ZP_08433326.1| histidine--tRNA ligase [Acinetobacter baumannii 6013150]
 gi|226737061|sp|B7H068|SYH_ACIB3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558639|sp|B0V5G6|SYH_ACIBY RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|169150169|emb|CAM88063.1| histidyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|213986004|gb|ACJ56303.1| histidyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|260410179|gb|EEX03478.1| histidyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
 gi|332730133|gb|EGJ61460.1| histidine--tRNA ligase [Acinetobacter baumannii 6013150]
          Length = 430

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/421 (10%), Positives = 118/421 (28%), Gaps = 23/421 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP    A   +   +    +  G  ++ +P ++   L+  +     D   KEM    D+ 
Sbjct: 14  LPTQTAAWRRLEQHLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMYTFFDKG 73

Query: 101 DKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           +         E     +         R      + +   FR E   +    +  +F ++ 
Sbjct: 74  NPPESLTLRPEGTAGCVRALVEHNLLRGATPRVWYMGPMFRYEKPQKGRYRQFHQFGVET 133

Query: 160 AYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                            +++             +     +      +    F+       
Sbjct: 134 FGVATPDIDAELIMLTARLWKRMGVDHMVQLELNTLGETDERTEYRNALVAFLNEHKDAL 193

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------- 271
            +    +     P+   ++  +    +     +        S  H ++L D L       
Sbjct: 194 DED-SQRRLTTNPLRILDSKIESTQKILENAPKLHDFLKEDSLSHFQQLQDYLTAAGIKF 252

Query: 272 ------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                         + +        G++ ++     + G  G+          + A+   
Sbjct: 253 VINQKLVRGLDYYNKTVFEWTTTALGSQGTVCAGGRYDGLVGQLKGKAD--QSVPAVGFA 310

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDD 383
             +       + +   + V   +  L+   A+        E++  +L        +    
Sbjct: 311 MGMERLLLLLEQVEQAEIVRDCEAFLVAEPAYQSKALVLAEQLRDQLEAANSNIRIKT-G 369

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               + SQ   AD  G    +I+G +     ++ +K   T  +  ++L E++ +   +F+
Sbjct: 370 SQGSMKSQMKKADQAGAVYAIILGEREWEAQQLAVKELATAEQSQVALAELVPFLIEKFT 429

Query: 444 N 444
            
Sbjct: 430 K 430


>gi|213155964|ref|YP_002318009.1| histidyl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|301346483|ref|ZP_07227224.1| histidyl-tRNA synthetase [Acinetobacter baumannii AB056]
 gi|301594212|ref|ZP_07239220.1| histidyl-tRNA synthetase [Acinetobacter baumannii AB059]
 gi|226737062|sp|B7I5G8|SYH_ACIB5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|213055124|gb|ACJ40026.1| histidyl-tRNA synthetase [Acinetobacter baumannii AB0057]
          Length = 430

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/421 (10%), Positives = 118/421 (28%), Gaps = 23/421 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP    A   +   +    +  G  ++ +P ++   L+  +     D   KEM    D+ 
Sbjct: 14  LPTQTAAWRRLEQHLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMYTFFDKG 73

Query: 101 DKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           +         E     +         R      + +   FR E   +    +  +F ++ 
Sbjct: 74  NPPESLTLRPEGTAGCVRALVEHNLLRGATPRVWYMGPMFRYEKPQKGRYRQFHQFGVET 133

Query: 160 AYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                            +++             +     +      +    F+       
Sbjct: 134 FGVATPDIDAELIMLTARLWKRMGVDHMVQLELNTLGETDERTEYRNALVAFLNEHKDAL 193

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------- 271
            +    +     P+   ++  +    +     +        S  H ++L D L       
Sbjct: 194 DED-SQRRLTTNPLRILDSKIESTQKILENAPKLHDFLKEESLSHFQQLQDYLTAAGIKF 252

Query: 272 ------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                         + +        G++ ++     + G  G+          + A+   
Sbjct: 253 VINQKLVRGLDYYNKTVFEWTTTALGSQGTVCAGGRYDGLVGQLKGKAD--QSVPAVGFA 310

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDD 383
             +       + +   + V   +  L+   A+        E++  +L        +    
Sbjct: 311 MGMERLLLLLEQVEQAEIVRDCEAFLVAEPAYQSKALVLAEQLRDQLEAANSNIRIKT-G 369

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               + SQ   AD  G    +I+G +     ++ +K   T  +  ++L E++ +   +F+
Sbjct: 370 SQGSMKSQMKKADQAGAVYAIILGEREWEAQQLAVKELATAEQSQVALAELVPFLIEKFT 429

Query: 444 N 444
            
Sbjct: 430 K 430


>gi|251791827|ref|YP_003006547.1| histidyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
 gi|247533214|gb|ACS96460.1| histidyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
          Length = 425

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/422 (14%), Positives = 129/422 (30%), Gaps = 32/422 (7%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V + +R   +  G  E+ +P ++S  L+  + G   D   KEM    DR+
Sbjct: 15  LPTDTPLWQWVESKVRSVLSAYGYAEIRMPIVESTPLFARAIGEVTDVVEKEMFTFDDRD 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           ++++   P            H   Y      +Y +   FR E   +    R R+F     
Sbjct: 75  EESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWY-MGPMFRYERPQKG---RYRQFHQVGV 130

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F +           +     +        ++ + +           + +V        
Sbjct: 131 EIFGIPNPEIDAELIALTARLWKDLGIFDHVTLQLNSIGSLDARKNYRQALVDFLQNHID 190

Query: 221 VFCSKDFMDFPIPSENT------DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP-- 272
           +                         ++++    +  +    +         L DSL   
Sbjct: 191 ILDEDSKRRLTTNPLRILDSKDQRVQEVLNDAPKLHDYLDDESREHFAQLCTLLDSLGIQ 250

Query: 273 -ENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAM 322
            E  +   RG++     +F       G + ++     + G       H      + +G  
Sbjct: 251 YEINQKLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATSGVGFAMGLE 310

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           R+V  V E +   +     D    ++     I        +  EK+ + L          
Sbjct: 311 RLVLLVQEVNPHIELPRAVDLYVVYQGEDTTI-----AAFNLAEKLRSELP--HLRTMLH 363

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHR 441
             G     QF  AD  G  L +++G + V + +V +K     G +  ++  ++ ++  + 
Sbjct: 364 CSGGNFKKQFKRADKTGAKLALVIGEEEVKNQQVVVKDLLQQGEQTAVAFADITSHIKNT 423

Query: 442 FS 443
             
Sbjct: 424 LK 425


>gi|218131906|ref|ZP_03460710.1| hypothetical protein BACEGG_03529 [Bacteroides eggerthii DSM 20697]
 gi|317474491|ref|ZP_07933765.1| glycyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
 gi|217986209|gb|EEC52548.1| hypothetical protein BACEGG_03529 [Bacteroides eggerthii DSM 20697]
 gi|316909172|gb|EFV30852.1| glycyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
          Length = 513

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 70/395 (17%), Positives = 128/395 (32%), Gaps = 57/395 (14%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD-SYGKEMLRLADRNDKAMIYGP 108
           LD +  II +E       E+  P +     W E  +++  +  EM   ++   K  +   
Sbjct: 166 LDELRQIILDE-------EIVCP-ISGTKNWTEVRQFNLMFTTEMGSTSEGAMKIYLRPE 217

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   QI   FR+E+  R  + R REF   +   F   P 
Sbjct: 218 TAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFFVK-PG 276

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                +     + L+    LG      R         L+H      D      F  K   
Sbjct: 277 TELDWFKTWKETRLKWHKALGFGDDHYRYHD---HDKLAHYANAATDIEFLMPFGFK--- 330

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                 E         L+   +             NE     + E      R        
Sbjct: 331 ----EVEGIHSRTNFDLSQHEKFSGKNIKYFDPETNESYTPYVIETSIGVDR-------- 378

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                +   MSA++                          +E+      +  P ++AP K
Sbjct: 379 ----MFLSIMSASYCEE----------------------QLENGETRVVLKLPAALAPVK 412

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ +   D    +   +I   L        +D+    IG ++   D +G P  V V  
Sbjct: 413 LAVMPLVKKD-GLPEKAREIIDNLK-FHFHCQYDEKD-SIGKRYRRQDAIGTPYCVTVDH 469

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + D+ V +++R T  +E +++ E+ N  + R S
Sbjct: 470 QTLEDNCVTLRNRDTMQQERVAISELNNIIADRVS 504


>gi|188585917|ref|YP_001917462.1| histidyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|229558698|sp|B2A2F9|SYH_NATTJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|179350604|gb|ACB84874.1| histidyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 421

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/403 (14%), Positives = 112/403 (27%), Gaps = 16/403 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    ++  N  G  E+  P  +  +L+  S     D   KEM    DR D+++   
Sbjct: 20  WHALEETAKKISNLYGFNEVRFPIFEHTELFTRSVGETSDIVSKEMYTFTDRGDRSLTLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P        ++  H       P  +Y I   FR +        R R+F       F    
Sbjct: 80  PEGTAPAARLYVEHKLFNEPQPVKYYYIGPMFRYDRPQAG---RYRQFHQFGVEVFGSLE 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
             +     K+ + Y       GL+                +E     + G+    C   +
Sbjct: 137 PETDVEVMKLLLDYFEALGLSGLELKLNSVGCKECRQKYLNELSNYFE-GKIDHICQDCY 195

Query: 228 MDFPIPSENTDFDDIIS----LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA---- 279
             +             S    +   V             H +K+ + L            
Sbjct: 196 QRYQTNPMRVLDCKKKSCREAIGEDVPLIVNYLCQDCATHFDKVKEILTSLNLPYQIDPH 255

Query: 280 --RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RG++      F        +    G  G+  Y+     G     V  AV         
Sbjct: 256 LVRGLDYYTKTAFEVVMPSLGAQDALGGGGRYDYLVEECGGPPTPGVGFAVGLERILLAL 315

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                ++   +       A  +  +    K+ A + + G     D     + +Q   A+ 
Sbjct: 316 EQKEINLDQEEKLDFYFIATGEEAKQEAFKLLATVREEGYSAVMDFERRSMRAQMKRANK 375

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                 +I+G   +++   +IK    G +  + L+        
Sbjct: 376 ANARFSLILGEAELNEQTCQIKDMEAGEQFQVPLKSFEERIKE 418


>gi|168486226|ref|ZP_02710734.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|183570682|gb|EDT91210.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
          Length = 429

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 118/409 (28%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNSATDVETIVMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    +   S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVESAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|90994539|ref|YP_537029.1| histidine-tRNA synthetase [Porphyra yezoensis]
 gi|116242479|sp|Q1XDD9|SYH_PORYE RecName: Full=Histidyl-tRNA synthetase, chloroplastic; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|90819103|dbj|BAE92472.1| histidine tRNA synthetase [Porphyra yezoensis]
          Length = 430

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/406 (13%), Positives = 122/406 (30%), Gaps = 18/406 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              ++  I +        E+  P  ++++L+        D   KEM R  DR+++ +   
Sbjct: 21  WQFIHNKISKLLECANYQEIRTPIFENSELYDRGIGEDTDIVNKEMYRFHDRSNRDITLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  +  SY +     +     FR E        +  +  ++   S D   
Sbjct: 81  PEGTAGIVRSFIENKMSYHHSLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSLDARA 140

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +           + L + +     +   + E   I      +++      +      K  
Sbjct: 141 DSEVIHLAMSIFNNLNLHNLKLDLNSIGKVEDRSIYQVKLRDYLTKY-HDDLDTDSQKRL 199

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--------ENKRVSA 279
              PI   ++   +   + +   + +   +  S  H   + + L          NK V  
Sbjct: 200 TSNPIRILDSKDSNTQKILTEAPKISDFLSLESQQHFGDVCNYLKLLNIPYNINNKLVRG 259

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
                   F   T  S        G        Q+G     A+     +       K  I
Sbjct: 260 LDYYNDTAFEIKTLTSKGQDTICGGGRYDSLVHQLGGKATPAVGCAIGLERLLLIAKDNI 319

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
              +    K     I        +   +I   L +    +  D        Q   A+   
Sbjct: 320 DLPN----KSIDFYIATQGTKANETGMQIMRFLHQQFFKIEIDVSSSNFSKQIKQANKKR 375

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---INYASHRF 442
               +I+GS  +++  + IK   +  +E++++ ++   ++Y   + 
Sbjct: 376 AVACIIIGSNEIAEGIITIKWLFSQKQENITVVQLKHSVSYLKKKI 421


>gi|304314455|ref|YP_003849602.1| histidyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587914|gb|ADL58289.1| histidyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 427

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/413 (13%), Positives = 121/413 (29%), Gaps = 25/413 (6%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMI 105
            +    V  ++R      G  E+  P  +   L+  +SG  +    ++    D+  + + 
Sbjct: 17  MRNRKEVENVLRRTFETYGYHEIKTPIFEDLKLFTVKSG--EEVVNQIYHFTDKGGRELA 74

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P     +  ++ + ++     P   Y     FR E        R R+F          
Sbjct: 75  LRPELTAPVARLYMNEMQ-REPKPIKMYYFGSCFRYERPQAG---RFRQFWQFGCELIGG 130

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-------SGPIGGDLSHEFIVLADTGE 218
               ++     +    LR     G +                 IG +L    + + D G+
Sbjct: 131 RSPLAEAEVITLAAESLRRLGLEGFEVHVGHLGILRGILGRENIGDELQDRIMGIIDKGD 190

Query: 219 -TQVFCSKDFMDFPIPSENTDFDDIISLNSI---------VEQWTAPYAATSDVHN-EKL 267
             ++    D ++    S +   + I +             +E +    +A  +       
Sbjct: 191 VDELESCLDGVEISPESRDLLMNLIGTHGGPEVLNDVRGLLEGYPESLSALDEFAELVDT 250

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            +           GI  G  +Y G  + + +                     G  RV + 
Sbjct: 251 LEHFGLEDYHVNLGIARGLDYYTGAVFEIYVPRLGAQRQICGGGTYNLVETFGGERVEST 310

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                 D             ++  + +    +       +I   +  VG     D  G +
Sbjct: 311 GFAFGFDRLMNALEMDEGDMRMVDVFVIPIHESTLPEAIRITQEIRSVGIAADMDLAGRK 370

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +    + AD +G    V+ G + + + KV ++      +E +   E+++    
Sbjct: 371 LRKALSHADHIGARFVVLTGERDLHEGKVTLRDMEDASQEAVDRTEIVDRLKK 423


>gi|169832457|ref|YP_001695482.1| histidyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|229558747|sp|B1I9T7|SYH_STRPI RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|168994959|gb|ACA35571.1| histidyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
          Length = 429

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 119/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENK 275
                      +D     +    ++  S+   +++ +  +        E L  D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQTHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I    +       ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVTLPIENALDVYIAVLGEGANAKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFVAKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|221506889|gb|EEE32506.1| glycyl-tRNA synthetase, putative [Toxoplasma gondii VEG]
          Length = 771

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 76/281 (27%), Gaps = 23/281 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E    AD     +          + +      
Sbjct: 468 FRQHLTSEMAHYAKDCWDAEVECSYGWVEVAGHADRSAFDLTSHSKVSKVDLVASRKFDS 527

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------------VGH 286
             I               T     + L D++ E        IE               G 
Sbjct: 528 PQIVEYVKYTPNKGLCGKTFKDRQQALHDAIEEKSDADRLEIEAALAAEGRYTLTLCTGE 587

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES--------SHDGKGI 338
           +F    +       T K    +     +     G  R++  ++E           + +  
Sbjct: 588 VFEISREMMKFEKTT-KKVSEESFVPAVIEPSFGIGRILHCIMEHAFRSRGIVDQEERCY 646

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +   ++      +I   + +    +  ++        G     D     IG ++A  D +
Sbjct: 647 MAFPAIIAPTKCIILPISSNPSFVELLQRARDACVARGISAKVDASTASIGKRYARNDEV 706

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           G P  + V  + + D  V ++ R +  +  +SL + ++  +
Sbjct: 707 GTPFAITVDFESLKDDTVTVRERDSMEQIRVSLSDAVDLVA 747



 Score = 50.9 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           G+Y + P G      V  + R+        +E+S P L    +   SG  D +   M++ 
Sbjct: 161 GLYDFGPPGCALKSAVEQLWRQHFVLAEDMLEVSGPCLTPHIVLKTSGHVDRFTDLMVKD 220

Query: 97  ADRNDKAMIYGPTHE 111
               D         E
Sbjct: 221 TVTQDCLRADKYLEE 235


>gi|301062985|ref|ZP_07203550.1| histidine--tRNA ligase [delta proteobacterium NaphS2]
 gi|300442866|gb|EFK07066.1| histidine--tRNA ligase [delta proteobacterium NaphS2]
          Length = 417

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 72/425 (16%), Positives = 117/425 (27%), Gaps = 35/425 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKE 92
           G    LP        +    R   +  G  E+  P L++  L+      E+   D   KE
Sbjct: 8   GFKDILPEESARWQEIETKARHLLSAFGYQEIRTPVLENTALFSRGIGQET---DIVSKE 64

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    D   + +   P     +   +  H           Y I   FR E   +    R 
Sbjct: 65  MYSFEDVKGRGLTMRPEATASVVRAYVQHRLYQNYPIQKLYAIGPMFRHERPQKG---RF 121

Query: 153 REFLMKDAYSF-DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           R+F   D   F D  P       +     +  I  R     I              H  +
Sbjct: 122 RQFHQIDVEFFGDPGPISDAEMISLAMHFFEAIGLRELTLHINSLGCPDCQPEFKDHLKV 181

Query: 212 VLADTG-ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-- 268
            LAD   +    C       P+   +   +   S+        A        H + L   
Sbjct: 182 YLADRASDLCPDCQIRAQINPLRVFDCKVETCKSIVQNAPTIPAFLCGNCRDHFDSLKAH 241

Query: 269 -----------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                      D L        R        + G + ++     + G           + 
Sbjct: 242 LDGLNISFEMNDLLVRGLDYYNRTTFEIQTEHLGAQNAVAGGGRYDGLVKTLGGPDHPAI 301

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G          +  + +      P+         + I A     R    +    L K G 
Sbjct: 302 GFAVGVERVVALLEASESLEPRRPE---------LFIAALGSKVRLLTFQWTTALRKQGI 352

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  D  G+ + SQ   A  LG    +IVG   V+  K  +++  T  + D+  E +I+ 
Sbjct: 353 WVELDYGGKGLKSQMKKAGRLGARNVLIVGDDEVAAKKAILRNMETREQMDIDFETLIST 412

Query: 438 ASHRF 442
                
Sbjct: 413 LKEML 417


>gi|328479646|gb|EGF48826.1| threonyl-tRNA synthetase [Lactobacillus rhamnosus MTCC 5462]
          Length = 101

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            D   +I  ++   G  V  DD  E++G +   A     P  V+VG K ++D+ V ++  
Sbjct: 1   LDYVNRIKRQMQAAGLRVKVDDRNEKMGYKIREAQTKKVPYTVVVGDKELNDAAVSVRRY 60

Query: 422 LT----GIREDMSLEEVINYASHRFSNNR 446
                     +M ++ ++    +   + +
Sbjct: 61  GDEHTEEEAGNMFIDAMVAEVKNYSRDGK 89


>gi|218960844|ref|YP_001740619.1| histidyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
 gi|167729501|emb|CAO80412.1| histidyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
          Length = 419

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/424 (14%), Positives = 126/424 (29%), Gaps = 29/424 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G +  LP        +    R+     G  E++ P  + A+L+  S     D   KEM R
Sbjct: 8   GTFDILPEDSYKWQFLQDSFRKMATCFGYEEITTPIFEVAELFERSSGESSDVVQKEMYR 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+  +     P     +   +  +     +     + +   FR +        R R+F
Sbjct: 68  FQDKKGREFALRPEGTAPVVRSYVENHLDKLSSRTKLFYLGPMFRYDRPQAG---RYRQF 124

Query: 156 LMKD-AYSFDLTPEGSKHSYNKMFVSY--LRIFHRLGLKSIPMRAESGPIGGDLSHEFI- 211
                 +     P          F+    L + +     +     +   +      E+  
Sbjct: 125 YQYGIEFIGSNNPYYDAEVIAVAFLWLNKLGLNNLRLEINSVGCPDCSAVYDKALQEYYR 184

Query: 212 -----VLADTGETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYAATSDVHNE 265
                +  D  +      +  +D  +PS      +  S ++ + E     ++A  D    
Sbjct: 185 PFLPKLCPDCVKRLETNPRRLLDCKVPSCIEFRKNAPSQMDYLDEPCKKHFSAVCDYLQA 244

Query: 266 KLFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                    + V          F       G + SL     + G    +         IG
Sbjct: 245 MNIPYTINPRIVRGLDYYTNTAFEIIYEGLGAQNSLVGGGRYNGLV--EQIGGKSIPAIG 302

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                  ++ +  + K  + P S     +  +      Q+           L   G  V 
Sbjct: 303 FAGGFERLLLALEEEKIELIPPSKPDAYLVCVGDNTRLQILPYL-----NALRTKGLIVD 357

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +D     + +Q   A   G    +I+G   ++   V +K+  TG +  + ++E   Y  +
Sbjct: 358 YDPDKSSLKAQLKSAASSGAKYAIIIGENELATKTVNLKNLQTGEQIAIPMDE--EYTIN 415

Query: 441 RFSN 444
           +  N
Sbjct: 416 KMKN 419


>gi|323526577|ref|YP_004228730.1| histidyl-tRNA synthetase [Burkholderia sp. CCGE1001]
 gi|323383579|gb|ADX55670.1| histidyl-tRNA synthetase [Burkholderia sp. CCGE1001]
          Length = 446

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/424 (15%), Positives = 115/424 (27%), Gaps = 25/424 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +     ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFETTVKSMLRSYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FTDALNGENLTMRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIAYLE 192

Query: 216 TGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                +     +     P+   +T    +  +     +      A S  H E L   L  
Sbjct: 193 KHMDVLDEDAKRRLYTNPLRVLDTKNPALQEVAQNAPKLIDFLGAESRAHFEGLQRILKA 252

Query: 274 NKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           N           RG++  ++  F       + A    A G  +   +   G  A      
Sbjct: 253 NNIPFTINPRLVRGLDYYNLTVFEWVTDK-LGAQGTVAAGGRYDPLIEQLGGKATAACGW 311

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW----DD 383
            +      + +     V   +   + +       R+    I  RL   G DV      D 
Sbjct: 312 AMGIERILELLKEEQLVPEDEGCDVYVVHQGDAAREQAFIIAERLRDTGLDVILHCSADG 371

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT------GIREDMSLEEVIN 436
                 SQ   AD  G    V++G   +++  V +K  R T        + ++  E++  
Sbjct: 372 QSASFKSQMKRADASGAAFAVVLGEDEIANGTVGVKPLRDTSANGGKSEQHNVPAEDLTE 431

Query: 437 YASH 440
           +  +
Sbjct: 432 FLIN 435


>gi|238788169|ref|ZP_04631964.1| Histidyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
 gi|238723756|gb|EEQ15401.1| Histidyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
          Length = 424

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/433 (14%), Positives = 131/433 (30%), Gaps = 53/433 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        + +I+++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTAIWQRIESILKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYV-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSY----NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
               A  F L              + + +     H     +     ++     +    F+
Sbjct: 126 HQLGAEVFGLQGPDIDAELILLSARWWRALGISEHVQLELNSIGSLDARADYREALVTFL 185

Query: 212 VLA------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHN 264
                    D            +D   P      +D   L+  +++ +   +A   ++ +
Sbjct: 186 EQHVEVLDEDCKRRMYSNPLRVLDSKNPDVQLLLNDAPKLSDYLDEESKQHFAGLCELLD 245

Query: 265 EKLFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
           +         + V         +F       G + ++     + G              +
Sbjct: 246 KAGIPYTVNERLVRGLDYYNRTVFEWVTSSLGAQGTVCAGGRYDGLVEQLGGRATPAVGF 305

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV-- 375
            +G  R+V  V   + D +               + + +  +  + A   +   L     
Sbjct: 306 AMGLERLVLLVQAVNPDFQVP---------ATVDVYVISSGENTQSAAMLLAEHLRDAMP 356

Query: 376 ---------GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
                    G +V           QF  AD  G  + +++G   V+  KV +K    G +
Sbjct: 357 TLKLMTNYGGGNVK---------KQFTRADKWGARVALMLGESEVAAQKVVVKDLRNGEQ 407

Query: 427 EDMSLEEVINYAS 439
           E ++  +V    +
Sbjct: 408 ETLAQADVAARLA 420


>gi|332299424|ref|YP_004441345.1| glycyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176487|gb|AEE12177.1| glycyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
          Length = 517

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 108/353 (30%), Gaps = 48/353 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  E+   A+      +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 199 FATEVGSTAEGASTIYLRPETAQGIFVNYLNVQKTGRMKLPFGIAQIGKAFRNEIVARQF 258

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      +       L   + LG      R           H
Sbjct: 259 IFRMREFEQMEMQYFVQ-PGTELEWFEYWKKLRLHWHYALGFPQSDYRYHD--------H 309

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           + +       T +     F                            Y     +H+   F
Sbjct: 310 DKLAHYANAATDIEYLMPF---------------------------GYKEVEGIHSRTDF 342

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     +         G    +    +      +             S   G+ +     
Sbjct: 343 DLSRHEE-------FSGKKLRYYDPDTKESYVPYVVETSIGVDRMFLSVLCGSYKE--EQ 393

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E+      +  P ++AP K++++ +   D    +   ++  RL  +     +D+    I
Sbjct: 394 TENGETRVVLSLPPALAPVKLAVLPLVRKD-GLDEKAHEVV-RLLHLDFTCQYDEKD-SI 450

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G ++   D +G P  + V  + + D+ V ++ R T  +E +++  + +  + R
Sbjct: 451 GKRYRRQDAIGTPYCITVDHQTLEDNTVTLRDRDTMQQERIAISALHDLIAER 503



 Score = 41.6 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 39 IYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
          +Y +   G +  +N+     E   R     + +        D+W  SG  D++   ++  
Sbjct: 34 VYDYGQNGVELKNNIKRYWWEAMTRLHPNVVGIDSSIFMHPDIWRASGHIDAFNDPLIDN 93

Query: 97 AD 98
           D
Sbjct: 94 KD 95


>gi|313886005|ref|ZP_07819743.1| glycine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924535|gb|EFR35306.1| glycine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 517

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 108/353 (30%), Gaps = 48/353 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  E+   A+      +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 199 FATEVGSTAEGASTIYLRPETAQGIFVNYLNVQKTGRMKLPFGIAQIGKAFRNEIVARQF 258

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      +       L   + LG      R           H
Sbjct: 259 IFRMREFEQMEMQYFVQ-PGTELEWFEYWKKLRLHWHYALGFPQSDYRYHD--------H 309

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           + +       T +     F                            Y     +H+   F
Sbjct: 310 DKLAHYANAATDIEYLMPF---------------------------GYKEVEGIHSRTDF 342

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     +         G    +    +      +             S   G+ +     
Sbjct: 343 DLSRHEE-------FSGKKLRYYDPDTKESYVPYVVETSIGVDRMFLSVLCGSYKE--EQ 393

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E+      +  P ++AP K++++ +   D    +   ++  RL  +     +D+    I
Sbjct: 394 TENGETRVVLSLPPALAPVKLAVLPLVRKD-GLDEKAHEVV-RLLHLDFTCQYDEKD-SI 450

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G ++   D +G P  + V  + + D+ V ++ R T  +E +++  + +  + R
Sbjct: 451 GKRYRRQDAIGTPYCITVDHQTLEDNTVTLRDRDTMQQERIAISALHDLIAER 503



 Score = 41.6 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 39 IYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
          +Y +   G +  +N+     E   R     + +        D+W  SG  D++   ++  
Sbjct: 34 VYDYGQNGVELKNNIKRYWWEAMTRLHPNVVGIDSSIFMHPDIWRASGHIDAFNDPLIDN 93

Query: 97 AD 98
           D
Sbjct: 94 KD 95


>gi|313125233|ref|YP_004035497.1| histidyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
 gi|312291598|gb|ADQ66058.1| histidyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
          Length = 431

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 68/423 (16%), Positives = 122/423 (28%), Gaps = 37/423 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P    A   V   + +   R G  E++ P L+   ++  +SG  +   +E+   
Sbjct: 7   GFRDFYPDEMSARRQVFDAVEDAAARYGFREIATPRLERTQMYVDKSG--EEIVEELYAF 64

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +  +  +  +   + P  +   +  +R E   +    R REF 
Sbjct: 65  EDKGGREVSLTPELTPTVARMVVAKQQ-ALSKPIKWVSSRPFWRFEQVQQG---RFREFY 120

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +   F  +   +           L             R     I G L   F    DT
Sbjct: 121 QTNVDIFGSSEPEADAEILAFAADALTSLGLTADDFEF-RVSHRDILGGLLDSFDADVDT 179

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN-- 274
                   K              D  +S +   E      A   D   E   D + +   
Sbjct: 180 RNAIRAVDKRAKVEDEEYLGLLSDAGLSYDQAREFDNLIVAGDLDAIAEFGGDDVKDAVE 239

Query: 275 --------------------KRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYV 312
                                  +ARG++   G +F           A F G    +   
Sbjct: 240 NLRAVLAATEDFGVRQYCDISLTTARGLDYYTGVVFECFDSTGDVSRAAFGGGRYDNLIE 299

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGII-WPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             G     A+ V           +    WP+        ++ +       R    ++   
Sbjct: 300 DFGGQPTPAVGVALGDATLQLLCERADVWPEEELQTDYYVLTVGD----TRAVASRVARD 355

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L   G  V  D      G+Q   AD +     VIVG + + + +V +K   TG +    +
Sbjct: 356 LRDRGNVVEMDVADRSFGAQMGYADSINAETVVIVGEQDLENDEVTVKDMDTGDQTTAPV 415

Query: 432 EEV 434
            + 
Sbjct: 416 SDF 418


>gi|317498118|ref|ZP_07956420.1| histidyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894595|gb|EFV16775.1| histidyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 414

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/401 (12%), Positives = 127/401 (31%), Gaps = 23/401 (5%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +  I ++        E+  P  +  +L+        D   KEM    D+  +++   P  
Sbjct: 23  LENIFKDLCASYNIHEIITPVFEHTELFQRGVGETTDVVQKEMYTFEDKGHRSISLKPEG 82

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLT 166
                  +  +  +    P   + I   FR E       R       EF+  ++   ++ 
Sbjct: 83  TAGAIRAYLQNGLANEPQPIKMFYITPAFRYEKPQSGRLRQHHQFGVEFVGAESPLAEVE 142

Query: 167 PEGSKHSYNKMF--VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
                 ++ K           + +G ++         +     HE  +     E      
Sbjct: 143 LITLVSTFIKKIGLKDAKLHINSIGCENCRKEYNKALLAYLKEHEEHLCPTCRERMEKNP 202

Query: 225 KDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
              +D  +P       D   +++ + ++  A +     + +        + + V      
Sbjct: 203 LRVIDCKVPECKEIVKDAPRTIDYLDDECKAHFEELKSLLDALNIPYEVDTEIVRGLDYY 262

Query: 284 VGHIFYFGTK--YSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
              +F F  +  ++L     +            +    +G+G  R++  + E   D    
Sbjct: 263 TKTVFEFVNEDGFTLCGGGRYDNLVHEIDGKVSMPSVGFGMGVERILYFLEEEKVD---- 318

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +   +   + +    Q  +    +I   L   G  V  D +G  + +Q   A+ L
Sbjct: 319 -----LPCTRDIDLYVGILGQEAKAKAYQIVVDLRDQGFVVETDYLGRSVKAQMKYANKL 373

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
                +I+G   ++ ++  +K+  T     +SL+++ +   
Sbjct: 374 NAKNTIIIGDDELAKNEGNVKNMETREVTTISLDKIADCLK 414


>gi|167525699|ref|XP_001747184.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774479|gb|EDQ88108.1| predicted protein [Monosiga brevicollis MX1]
          Length = 913

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 83/283 (29%), Gaps = 19/283 (6%)

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                   ++  + + +              +          E +  AD     +     
Sbjct: 405 QFMVHIGVDQERIRFRQHLPTEMAHYACDCWDCELETSYGWIECVGCADRSCYDLEQHAK 464

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS----LPENKRVSARGI 282
               PI +     + +I    +VE            + + +F        E      + +
Sbjct: 465 AAKQPILASVPLKEPLIKDVVVVEANKGLVGKAFRQNAKVVFAHFEAMSNEEAEQFEKDL 524

Query: 283 EVGHI--------FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           + G +        F     +        K    +     +     G  R++ A++E S +
Sbjct: 525 QNGPVTLKLEAGEFEIQPAWITIKRKQVK-EHERKFVPSVIEPSFGLGRIIYALLEHSFE 583

Query: 335 GKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +      +       +  +K      +++       +++   L++ G     DD    I
Sbjct: 584 CREGDAQRTWLRLAPLVAPVKCSVLPLSNNAEFNPFLDELVLALTRAGVSTRRDDSAASI 643

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           G ++A  D +G P  V V    + D  V  + R T  +  +S+
Sbjct: 644 GKRYARTDEIGIPFGVTVDFDTIKDRTVTFRFRDTMEQIRLSI 686



 Score = 45.1 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 7/86 (8%)

Query: 25  LMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           LM R               G+Y + P G   + N+ A  R+        +E++   +   
Sbjct: 117 LMKRRFFFAPSFEIYGGVAGLYDYGPTGCAIMANMIAEWRQHFVLEENMLEVNCTAMTPH 176

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKA 103
            +   SG    +   M+R     D  
Sbjct: 177 YVLEASGHAARFADIMVRDVKTGDCH 202


>gi|226306422|ref|YP_002766382.1| histidyl-tRNA synthetase [Rhodococcus erythropolis PR4]
 gi|259511955|sp|C0ZZ58|SYH_RHOE4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|226185539|dbj|BAH33643.1| histidyl-tRNA synthetase [Rhodococcus erythropolis PR4]
          Length = 423

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/398 (15%), Positives = 113/398 (28%), Gaps = 31/398 (7%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   + +P  +   L+        D   KEM   ADR D+++   P     +      H
Sbjct: 38  AGYGHIELPIFEDTGLFARGVGESTDVVSKEMYTFADRGDRSVTLRPEGTAGVMRAVIEH 97

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                 LP         FR E        + ++  ++        P             +
Sbjct: 98  SLDRGQLPVKVSYAGPFFRYERPQAGRYRQLQQVGVEAIGI--DDPALDAEVIAIADAGF 155

Query: 182 LRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGET-----QVFCSKDFMDFPIPS 234
             +        I    +    P   +L  EF+      E      ++   +   D     
Sbjct: 156 RSLGLDGFRLEITSLGDDTCRPQYRELLQEFLFALPLDEDTRRRAEINPLRVLDDKRPDV 215

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY----- 289
                   + L+ + E   A +       +      +   + V          F      
Sbjct: 216 REMTAGAPLMLDHLSESCKAHFDEVLAHLDALGVPYVVNPRMVRGLDYYTKTTFEFVHDG 275

Query: 290 FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            G +  +     + G         +    +GIG  R V A+              SVAP 
Sbjct: 276 LGAQSGIGGGGRYDGLMEQLGGQPLSGIGFGIGVDRTVLAL---------EAEGKSVAPP 326

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVI 405
               +         + A  KI  +L   G  V         G +     AD  G  + ++
Sbjct: 327 ARVDVFCVPMGAEAKAALVKIAHQLRANGIRVDLAYGNR--GVKGSMKAADRSGAAVALV 384

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G + + +  V +K   TG +E + L++V++       
Sbjct: 385 LGERELEEGVVVVKQLATGEQETVPLDQVVDKLGDLVE 422


>gi|62550772|emb|CAG44460.1| histidyl t-RNA synthetase [Lactobacillus buchneri]
          Length = 428

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/422 (14%), Positives = 123/422 (29%), Gaps = 20/422 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G    LP   +    V  I R+  N+ G   +  P  ++ +++        D   K+M  
Sbjct: 11  GTVDILPGEIEVWQKVEKIARDTFNQFGYRGIRTPIFENYNVFARNVGDTSDIVEKQMYD 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P         +  +         P+  Y +   FR E        R R
Sbjct: 71  FDDKGGRRLALRPEGTAGTVRAYVENKLFGPEYPKPYKVYYMGPMFRYERPQSG---RQR 127

Query: 154 EFLMKDAY-SFDLTPEGSKHSYNKMFVSYLR--------IFHRLGLKSIPMRAESGPIGG 204
           +F           +P+      ++    + R          + LG K          I  
Sbjct: 128 QFTQIGCEALNSESPQIDVEVISEALEFFKRLGINDLKLTINTLGDKETRDAYHKALIDY 187

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                  +  D+ E         +D     +     +  S+   +  ++A Y A      
Sbjct: 188 LKPFYNQLSDDSKERMYKNPLRVLDSKDEQDKKIVANAPSILDSLSDYSAKYFAEVKRLL 247

Query: 265 EKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG-IGA 321
           +KL     E      RG++     IF   +   +          G  +   +   G    
Sbjct: 248 DKLNIQY-EIDSDMVRGLDYYTQTIFEIMSDSDVFGGGYVTVCGGGRYNGLISQLGGPDE 306

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
             +   +                AP     +   + D    +   ++  ++ K G +   
Sbjct: 307 GGIGYGIGVERLLLLVNKENPDFAPKYGPDVYFASADNAGDELAFEVLDKIRKNGVEADK 366

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +    ++GSQ   A         ++G K V +   E+    +   + +S++E  +     
Sbjct: 367 NYQDIKVGSQIKEAIRRKARYYAVIGKKEVDEGSFELSKVDSDKTQTVSVKEFEDDPKKF 426

Query: 442 FS 443
            S
Sbjct: 427 IS 428


>gi|237736638|ref|ZP_04567119.1| histidyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
 gi|229420500|gb|EEO35547.1| histidyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
          Length = 413

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/396 (15%), Positives = 110/396 (27%), Gaps = 14/396 (3%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           ++   +E     G   +  P  +  DL+        D   KEM    DR D+++   P +
Sbjct: 24  ISKTAQEIFESYGYTFIKTPIFEETDLFKRGIGEGTDVVEKEMYTFKDRGDRSLTLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   +  +    +     +Y     FR E        R REF          +    
Sbjct: 84  TASVVRSYLENAIYGKEDVTKYYYNGSMFRYERPQAG---RQREFNQIGVEVLGESSPIL 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD--TGETQVFCSKDFM 228
                 M  S L       L+       +           +   +    E    C     
Sbjct: 141 DAEVIAMSYSLLEKLGITDLEVHINSVGTNASRTKYREMLLNFLEPMKEELCEDCRMRME 200

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
             P+   +   D    L                 H E +   L        + +E   + 
Sbjct: 201 KNPLRVLDCKVDKCKELTKDAPSIIDSLNEEERAHYETVKKYL---DIFGVKYVEDSRLV 257

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV----AAVIESSHDGKGIIWPDSV 344
                YS  +        G    V  G      ++ +       +  +   + ++     
Sbjct: 258 RGLDYYSSTVYEIVTNKLGAQGTVLGGGRYDNLLKQLGDKDIPAVGFAAGVERMMMLLED 317

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
            P     + +    +  ++   KI   L   G   F D   + + S    AD L     +
Sbjct: 318 YPKNNPDVYVAWLGENTQEFGLKIAKILRDNGIKTFVDFNSKGMKSHMKKADKLAVKYCI 377

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           IVG   ++   V +K      +E+MSLE+ I     
Sbjct: 378 IVGEDEMNKDVVVLKDFSARTQEEMSLEKAIEIIKK 413


>gi|324989694|gb|EGC21638.1| histidine--tRNA ligase [Streptococcus sanguinis SK353]
          Length = 426

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/402 (14%), Positives = 114/402 (28%), Gaps = 25/402 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
               +     +M     + F  +G+ ++ +   S       +                  
Sbjct: 137 NNPATD---VEMIAMAAQFFKDIGITNVSLELNSLGNPESRAAYRQALIDYLTPLKASLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D   P +    +   S+   +++ ++ Y A      E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESSTYFAAVRSMLETLQIPYVI 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               V         IF F T+ +         A G+   +     G     V   +    
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLT--ICAGGRYDGLVAYFGGPETPGVGFGMGLER 311

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      +       + +            ++   L   G     D +  ++ +QF
Sbjct: 312 LLLVLDKQGVELPIETALDVYVAVLGPGANGRALELVQALRAQGFAAERDYLDRKLKAQF 371

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             AD       + +G   V   +V +K+        +SL+++
Sbjct: 372 KSADTFKAKTLITLGESEVESGQVTVKNNHNREEITVSLDQI 413


>gi|261868682|ref|YP_003256604.1| histidyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261414014|gb|ACX83385.1| histidyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 425

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/426 (15%), Positives = 127/426 (29%), Gaps = 40/426 (9%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V   +R      G  E+ +P ++S  L+  + G   D   KEM    DR+
Sbjct: 15  LPTETPLWQWVENKVRSVLQAYGYAEIRMPIVESTPLFARAIGEVTDVVEKEMFTFNDRD 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+++   P            H   Y      +Y +   FR E   +    R R+F     
Sbjct: 75  DESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWY-MGPMFRYERPQKG---RYRQFHQVGV 130

Query: 161 YSFDLTPEGSKHSYNK----------MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
             F +                     +F       + +G            +    +H  
Sbjct: 131 EIFGIPNPEIDAEIIALTARLWKDLGIFDHVTLQLNSIGSLEARKNYRQALVAFLQNHLD 190

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I+  D+           +D          +D   L+  +++     +         L D+
Sbjct: 191 ILDEDSKRRLTTNPLRILDSKDQRVQQVLNDAPKLHDYLDEE----SREHFAQLCALLDN 246

Query: 271 LP---ENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           L    E  +   RG++     +F       G + ++     + G    +      + G+G
Sbjct: 247 LGITYEINQKLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLV--EQLGGHATSGVG 304

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCD 378
               +  ++    +    I   S     I         +    A   +  +L        
Sbjct: 305 FAMGLERLVLLVQEVNKQITLPSAVDIYIVYP-----GEGTTVAAFSLAEKLRSELPHLR 359

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINY 437
                 G     QF  AD  G  L +++G   V + +V +K       +  ++L ++  +
Sbjct: 360 TLLHCSGGNFKKQFKRADKSGAKLALVIGEDEVKNQQVVVKELLQHSEQVVVALSDITTH 419

Query: 438 ASHRFS 443
             + F 
Sbjct: 420 IQNTFK 425


>gi|262371083|ref|ZP_06064405.1| histidyl-tRNA synthetase [Acinetobacter johnsonii SH046]
 gi|262313969|gb|EEY95014.1| histidyl-tRNA synthetase [Acinetobacter johnsonii SH046]
          Length = 431

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/427 (11%), Positives = 125/427 (29%), Gaps = 23/427 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    A   +   +    +  G  ++ +P ++  +L+  S     D   KEM  
Sbjct: 9   GFNDILPTQTPAWRRLEQHLASLMDAYGYQQIRLPIVEQTNLFKRSIGDATDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D+ +         E     +         R      + I   FR E   +    +  +
Sbjct: 69  FLDKGNPPESLTLRPEGTAGCVRAMLEHNLLRGATPRVWYIGPMFRYEKPQKGRYRQFHQ 128

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVL 213
           F ++         +             + +  ++ L+ +    ++          EF+  
Sbjct: 129 FGVETFGVATPDMDAELILMTARLWKRMGVADKVQLELNTLGESDERAAYRAALVEFLES 188

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               +      +     P+   ++      ++     +        +  H   L + L +
Sbjct: 189 H-KNDLDEDSQRRLTTNPLRILDSKDAKTQAILENAPKLHDFMGEETLQHFATLQEYLTD 247

Query: 274 N------KRVSARGIEV-------GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                   +   RG++            + G++ ++     + G  G+       S    
Sbjct: 248 AGVSFVINQKLVRGLDYYNKTVFEWTTTHLGSQGTVCAGGRYDGLVGQLKGKADQSVPAV 307

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CD 378
              +    +    +      P       +          +     E+I  +L        
Sbjct: 308 GFAMGMERLLLLLEQVEDATPIRDCEMFLLADPASQGKALV--LAEQIRNQLDAASSTLR 365

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +        + SQ   AD  G    +I+G + V  ++  +K   T  +  +++++++ + 
Sbjct: 366 LKV-GSHGSMKSQMKKADQSGALFALILGEREVEAAQFAVKELATAEQTLVAVDDIVPFM 424

Query: 439 SHRFSNN 445
             +FS+ 
Sbjct: 425 IEKFSSK 431


>gi|257469473|ref|ZP_05633565.1| histidyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317063717|ref|ZP_07928202.1| histidyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|313689393|gb|EFS26228.1| histidyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
          Length = 415

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/397 (14%), Positives = 110/397 (27%), Gaps = 16/397 (4%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ + +E     G   +  P  +  DL+        D   KEM    DR ++++   P +
Sbjct: 24  ISKMAQEVFENYGYTYIKTPIFEETDLFKRGIGEGTDVVEKEMYTFKDRGERSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   +  +    +     +Y     FR E        R REF          +    
Sbjct: 84  TASVVRSYLENGIYGKEEVTRYYYNGSMFRYERPQAG---RQREFNQIGVEVLGESSPIL 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD--TGETQVFCSKDFM 228
                 M  + L       L+       +         + +   +    E    C     
Sbjct: 141 DAEVIAMSYTLLEKLGISDLEVHINSVGTTASRTQYREKLLNFLNPIKEELCEDCQMRME 200

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
             P+   +   +    L                 H E +   L        + +E   + 
Sbjct: 201 KNPLRVLDCKVEKCKELTKEAPSIIDSLTEEERAHYEDVKKYL---DIFGIKYVEDPKLV 257

Query: 289 YFGTKYSLPMSATFKGADGKDHY-----VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                YS  +        G                    + + AV  ++   + ++  + 
Sbjct: 258 RGLDYYSSTVYEIVTNKLGAQGTVLGGGRYDNLLKQLGDKDIPAVGFAAGVERMMMLLEE 317

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
                  +      D+  +D   KI   L   G   F D   + + S    AD LG    
Sbjct: 318 YPSNSPDVYVAWLGDE-AKDFGIKITKVLRDAGVKTFVDFNSKGMKSHMKKADKLGVKYC 376

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +I G   ++   V +K      +E++S E+ +     
Sbjct: 377 IIAGEDEINKGTVVLKDFANRTQEELSFEKAMEIIKE 413


>gi|153955741|ref|YP_001396506.1| histidyl-tRNA synthetase [Clostridium kluyveri DSM 555]
 gi|219856110|ref|YP_002473232.1| hypothetical protein CKR_2767 [Clostridium kluyveri NBRC 12016]
 gi|189082288|sp|A5N1Y9|SYH_CLOK5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|254782325|sp|B9E5P3|SYH_CLOK1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|146348599|gb|EDK35135.1| HisS [Clostridium kluyveri DSM 555]
 gi|219569834|dbj|BAH07818.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 416

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/398 (12%), Positives = 106/398 (26%), Gaps = 13/398 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    +   +  G  E+  P  +  +L+        D   KEM    DR  +++   
Sbjct: 20  WHYLEDKFKNIADSYGYREIRTPVFEYTELFQRGVGETTDVVQKEMYTFLDRAGRSLTLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F          P   +      R E   +  +    +F ++   S + + 
Sbjct: 80  PEGTSPAVRAFVEGSLYNEAQPTKLFYFTPVLRYENVQKGRLREHHQFGIEAFGSREAS- 138

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                  +     Y  +       +I     S        ++ +    + +    C    
Sbjct: 139 -LDAEVISLAMRIYEELGVDGIELNINSIGCSK--CRKEYNDILKTFLSKQYDNICDTCK 195

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
             F             S   IV+          D   E  F+SL         G ++  +
Sbjct: 196 TRFHKNPMRILDCKEKSCREIVKDAPLMLHHLCDECREH-FESLKMYLEGLGIGYKINPL 254

Query: 288 FYFGTKYSLPMSATFKGADGKDH---YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
              G  Y           +               +G  ++ A       +   +   ++ 
Sbjct: 255 IVRGLDYYSKTVFEIINKNITICGGGRYDYLIEEVGGPKMPAVGFGMGIERTLLTLSENG 314

Query: 345 APFK---ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
                     + I       R     +  +L +      +D M   + ++   A+ +   
Sbjct: 315 IEIPKLPYIDLYIGIIGDKARIKALTLTNKLREKNVRCEYDHMNRSVKAEMKYANKINAR 374

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             VI+G   +     + K    G + ++SL ++    +
Sbjct: 375 FTVILGENEIESGIAKFKRMEDGQQFEISLGDLSAILN 412


>gi|306826279|ref|ZP_07459613.1| histidine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304431555|gb|EFM34537.1| histidine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 426

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/409 (14%), Positives = 119/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVVSRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+   ++    A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDAESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I    +       ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGEEANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T    +++L+ +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVEVTLDVISQNFSEVFEK 423


>gi|237831297|ref|XP_002364946.1| glycyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
 gi|211962610|gb|EEA97805.1| glycyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
          Length = 771

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 76/281 (27%), Gaps = 23/281 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E    AD     +          + +      
Sbjct: 468 FRQHLTSEMAHYAKDCWDAEVECSYGWVEVAGHADRSAFDLTSHSKVSKVDLVASRKFDS 527

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE--------------VGH 286
             I               T     + L D++ E        IE               G 
Sbjct: 528 PQIVEYVKYTPNKGLCGKTFKDRQQALHDAIEEKSDADRFEIEAALAAEGRYTLTLCTGE 587

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES--------SHDGKGI 338
           +F    +       T K    +     +     G  R++  ++E           + +  
Sbjct: 588 VFEISREMMKFEKTT-KKVSEESFVPAVIEPSFGIGRILHCIMEHAFRSRGIVDQEERCY 646

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +   ++      +I   + +    +  ++        G     D     IG ++A  D +
Sbjct: 647 MAFPAIIAPTKCIILPISSNPSFVELLQRARDACVARGISAKVDASTASIGKRYARNDEV 706

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           G P  + V  + + D  V ++ R +  +  +SL + ++  +
Sbjct: 707 GTPFAITVDFESLKDDTVTVRERDSMEQIRVSLSDAVDLVA 747



 Score = 50.9 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           G+Y + P G      V  + R+        +E+S P L    +   SG  D +   M++ 
Sbjct: 161 GLYDFGPPGCALKSAVEQLWRQHFVLAEDMLEVSGPCLTPHIVLKTSGHVDRFTDLMVKD 220

Query: 97  ADRNDKAMIYGPTHE 111
               D         E
Sbjct: 221 TVTQDCLRADKYLEE 235


>gi|257452138|ref|ZP_05617437.1| histidyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|317058683|ref|ZP_07923168.1| histidyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|313684359|gb|EFS21194.1| histidyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
          Length = 413

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/406 (14%), Positives = 124/406 (30%), Gaps = 32/406 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            + ++ I ++     G   +  P  +  DL+        D   KEM    DR D+++   
Sbjct: 21  YNYISEIAKQVFESYGCQFIKTPIFEETDLFKRGIGEATDVVEKEMYTFKDRGDRSITLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLT 166
           P +   +   +  +    +     FY     FR E        R REF         + +
Sbjct: 81  PENTASVVRSYLENAIYAKEDVSRFYYNGSMFRYERPQAG---RQREFNQIGVEVLGEKS 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCS 224
           P          +    ++        I       S         E+       +    C 
Sbjct: 138 PILDAEIIAMGYKLLQKLGITDLEVRINCIGSNASRTEYRKKLLEYFTPM-KEDLCEDCK 196

Query: 225 KDFMDFPIPSENTDFDDIIS------LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                 P+   +   D          ++S+ E+  A Y A            + ++  V 
Sbjct: 197 NRLERNPLRVLDCKVDHDKMDGAPSIIDSLFEEERAHYEAVKKYLTIFGVPFVEDSGLVR 256

Query: 279 ARGIEVGHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                   +F       G++ ++     +     +     + ++G  +      ++    
Sbjct: 257 GLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKQLGDKDIAAFGFASGVERIMMLL--- 313

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                       P K + + I    +   +   +I A L +    V  D   + + S   
Sbjct: 314 ---------EDYPKKATDVYIAWLGENTLEKAMEITALLRENNLKVAVDYNSKGMKSHMK 364

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            AD L     VI+G   ++ + V +K+  T  +E++S+E ++    
Sbjct: 365 KADKLNTKYCVILGEDELAKNVVVLKNFETREQEEVSVENILMAIK 410


>gi|330507921|ref|YP_004384349.1| glycyl-tRNA synthetase [Methanosaeta concilii GP-6]
 gi|328928729|gb|AEB68531.1| glycyl-tRNA synthetase [Methanosaeta concilii GP-6]
          Length = 581

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 47/104 (45%), Gaps = 2/104 (1%)

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +   VAP +++++ +    ++     +KI   L   G    +D  G  IG ++   D +G
Sbjct: 462 FKPQVAPIEVAVLPLMDRSELVGP-AKKILEELRSRGMRTDYDTSG-SIGRRYRRNDEIG 519

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P +V +  + + +  V I+ R +  +  ++  +V++      +
Sbjct: 520 TPYEVTIDYETIEEGTVTIRDRDSMSQVRVARWQVVDKLQALLN 563



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + G Y + PLG      +  I R+      G  E+  PT+    ++  SG    +   + 
Sbjct: 27  AAGFYDYGPLGAPLKRRIEDIWRQYFVIAEGFAEIEAPTIGVEGIFQASGHLSGFSDPLT 86

Query: 95  RLADRND 101
              +  +
Sbjct: 87  GCKECKE 93


>gi|255730579|ref|XP_002550214.1| glycyl-tRNA synthetase 1 [Candida tropicalis MYA-3404]
 gi|240132171|gb|EER31729.1| glycyl-tRNA synthetase 1 [Candida tropicalis MYA-3404]
          Length = 652

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 6/142 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              ++    +     G  R++ ++ E     +       V      +   K      +++
Sbjct: 488 EHVREFVPNVIEPSFGIGRILYSIFEHQFWCRPDDADRGVLSLPPIVAPTKVLLVPLSNN 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +   +K+   L K       DD G  IG ++A  D LG P  + +    V D  V +
Sbjct: 548 PELQPVVKKVSQALRKEKIPFKIDDSGASIGKRYARNDELGTPFGITIDFDSVKDDSVTL 607

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R +  +   S+EE++     
Sbjct: 608 RERDSTKQVRGSIEEIVEAIKD 629



 Score = 44.3 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G++ + P G    +NV    R+        +E+    L   D+   SG  D +   M +
Sbjct: 36 AGLFDFGPPGCAFQNNVIDAWRKHFILEEDMLEVEATMLTPHDVLKTSGHVDRFTDWMCK 95


>gi|221483162|gb|EEE21486.1| glycyl-tRNA synthetase, putative [Toxoplasma gondii GT1]
          Length = 134

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 43/101 (42%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
             ++APF+ ++  +  +         ++   L + G  V WD     IG ++  AD LG 
Sbjct: 8   HPALAPFQAAVFPVVTNVHELTARARRLCGWLRERGFSVLWDFSSTSIGRRYRRADGLGI 67

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           P    +    ++D  V ++ R +  +  +  EE  ++   R
Sbjct: 68  PFCFTLDRTSLNDGTVTVRWRNSAEQRRLKFEEAESFLKER 108


>gi|194467292|ref|ZP_03073279.1| histidyl-tRNA synthetase [Lactobacillus reuteri 100-23]
 gi|194454328|gb|EDX43225.1| histidyl-tRNA synthetase [Lactobacillus reuteri 100-23]
          Length = 425

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/414 (14%), Positives = 121/414 (29%), Gaps = 18/414 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G    LP      + V    RE  N+ G   +  P  +   ++        D   KEM  
Sbjct: 8   GTADILPGTTSIWEKVEQNAREVFNQFGYRGIRTPMFEDYHVFSRNVGDTSDIVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   +  +         P+  Y +   FR E        R R
Sbjct: 68  FHDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYKVYYMGPMFRYERPQSG---RQR 124

Query: 154 EFLMKDAY-SFDLTPEGSKHSYNKMFV--------SYLRIFHRLGLKSIPMRAESGPIGG 204
           EF         + +P+      +            +   + + LG K +        I  
Sbjct: 125 EFHQIGVEALNNESPQIDVEVISMAMALFKKFGVPNVKLVINTLGDKKVREDYREALINY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              H   +  D+ E         +D     +     +  S+   +++ +  Y        
Sbjct: 185 LKPHYDELSKDSQERLYKNPLRVLDSKDEGDKKIVAEAPSILDYLDEESQAYFDEVQALL 244

Query: 265 EKL-FDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            KL  D   +   V         IF             T   A G+ + +     G    
Sbjct: 245 NKLGIDFEIDTNMVRGLDYYNHTIFEIMSDSPVFGGGYTTVCAGGRYNGLISQLGGPEEG 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            +   +              + AP     +   + DQ   +   ++ +++ + G     D
Sbjct: 305 GIGFGMGVERLMLLLQEENPAFAPQDQLDVFFASADQQGDEMAFEVLSKVREQGIVADKD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             G ++G Q   A         + G++ V +   ++K+  T     + + + + 
Sbjct: 365 YSGVKVGKQIKEAFRRNAKYFAVFGAREVEEGTFQLKNAATKDATTIKVSDFVA 418


>gi|294637688|ref|ZP_06715966.1| histidine--tRNA ligase [Edwardsiella tarda ATCC 23685]
 gi|291089164|gb|EFE21725.1| histidine--tRNA ligase [Edwardsiella tarda ATCC 23685]
          Length = 424

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/406 (12%), Positives = 116/406 (28%), Gaps = 19/406 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        + A +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPADTALWQPIEAALKQVLASYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            H   Y      +Y     + +   + R R      
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + K+           + +G            +     ++
Sbjct: 130 AEVFGLAGPDIDAEIIMMTARWWKVLGIAEHVALELNSIGSLEARANYRDALVAYLEQYK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLF 268
             +  D            +D   P      +D   L+  +++ +   +A    + ++   
Sbjct: 190 DQLDEDCKRRMYSNPLRVLDSKNPDVQALLNDAPRLSDYLDEESRIHFAGLCRLLDDAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G + ++     + G   +       + G     
Sbjct: 250 AYTVNERLVRGLDYYNRTVFEWVTNSLGAQGTVCAGGRYDGLVAQLGGHATPAVGFAMGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++          +          +   +          E++   L ++     +  
Sbjct: 310 ERLVLLVQ---AVNPDFLPQRTVDVYLIAVGEGTQSAAMRLAEQLRDALPQMRLMTNY-- 364

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            G     QFA AD  G  + +++G   V   +V +K   +G ++ +
Sbjct: 365 GGGNFKKQFARADKWGARIALVLGESEVQSGQVNVKCLASGEQQSV 410


>gi|293610297|ref|ZP_06692598.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827529|gb|EFF85893.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 430

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/426 (10%), Positives = 112/426 (26%), Gaps = 23/426 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    A   +   +    +  G  ++ +P ++   L+  +     D   KEM  
Sbjct: 9   GFNDILPSQTVAWRRLEQHLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D+ +         E     +         R      + +   FR E   +    +  +
Sbjct: 69  FFDKGNPPESLTLRPEGTAGCVRALVEHNLLRGATPRVWYMGPMFRYEKPQKGRYRQFHQ 128

Query: 155 FLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           F ++                  +++             +     +      +    F+  
Sbjct: 129 FGVETFGVATPDIEAEVILMTARLWKRMGVDHMVQLELNTLGEKDERTEYRNALVAFLNE 188

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-- 271
                 +    +     P+   ++  +    +     +        S  H ++L D L  
Sbjct: 189 HKDALDED-SQRRLTTNPLRILDSKIESTQKILENAPKLYDFLKEDSLSHFQQLQDYLTA 247

Query: 272 -----------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                              + +        G++ ++     + G  G+       S    
Sbjct: 248 AGVKFVINQKLVRGLDYYNKTVFEWTTTALGSQGTVCGGGRYDGLVGQLKGKPDQSVPAV 307

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CD 378
              +    +    +              +          +     E++  +L        
Sbjct: 308 GFGMGMERLLLLVEQVEQAQVIRDCEVFLVAEPAYQTKALI--LAEQLRDQLEAANSSIR 365

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +        + SQ   AD  G    +I+G +     ++ IK   T  +  ++L E++ + 
Sbjct: 366 IKT-GSQGSMKSQMKKADQAGAVYAMILGEREWEAQQLAIKELATAEQSQVALAELVPFL 424

Query: 439 SHRFSN 444
             +F+ 
Sbjct: 425 IEKFTK 430


>gi|126179365|ref|YP_001047330.1| glycyl-tRNA synthetase [Methanoculleus marisnigri JR1]
 gi|125862159|gb|ABN57348.1| glycyl-tRNA synthetase [Methanoculleus marisnigri JR1]
          Length = 576

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 10/141 (7%)

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLINIKAHDQVCR 362
              +     G  R++   +E S+  + +          P +VAP ++++  +  +     
Sbjct: 428 MPHVIEPSYGIDRMIYVALEHSYAEEEVEGEIRKVLRLPPAVAPIQVAVFPL-MNRDGLE 486

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              + I  RL++      +DD G  IG ++   D +G P  V V  + + D+ V ++ R 
Sbjct: 487 TVAQTITERLTQCRILAQYDDSGA-IGRRYRRQDEVGTPFAVTVDYETLEDNTVTVRDRD 545

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +  +  + +E +    S   S
Sbjct: 546 SMEQVRIPIERLPEVLSALIS 566



 Score = 60.9 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 43/137 (31%), Gaps = 10/137 (7%)

Query: 28  RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLW 80
           R G +   S       G   + PLG     NV  + R     + G  E+  PT+ +  ++
Sbjct: 17  RRGFVWPSSEIYGSIAGFIDYGPLGAMLKRNVENLWRSFYVFQEGYYEIECPTVGNEAIF 76

Query: 81  VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
           V SG    +  +M++     +         E  +     +   S   L    Y++     
Sbjct: 77  VASGHVKEFADKMVQCPHCGEYLRADHIAEENGI---ENAGTLSAEALQAALYELPCPSC 133

Query: 141 DELRPRFGVMRSREFLM 157
            E     GV        
Sbjct: 134 KEPLGEAGVFAFNLMFQ 150


>gi|225861939|ref|YP_002743448.1| histidyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230974|ref|ZP_06964655.1| histidyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254103|ref|ZP_06977689.1| histidyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298501624|ref|YP_003723564.1| histidine--tRNA ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|254782352|sp|C1CU26|SYH_STRZT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|225726465|gb|ACO22316.1| histidyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237219|gb|ADI68350.1| histidine--tRNA ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|327388859|gb|EGE87207.1| histidyl-tRNA synthetase [Streptococcus pneumoniae GA04375]
          Length = 429

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 118/409 (28%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIVMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENK 275
                      +D     +    ++  S+   +++ +  +        E L  D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQTHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|171686512|ref|XP_001908197.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943217|emb|CAP68870.1| unnamed protein product [Podospora anserina S mat+]
          Length = 734

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 26/291 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     +         P+       +
Sbjct: 422 FRQHMDNEMAHYACDCWDAELHTSAGWVECVGCADRSAYDLSVHAKKTGAPLVVRQRLEE 481

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL----PENKRVSARGIEVGHIFYFGTKYSL 296
            I      +      +        + + ++L     E +    + +E             
Sbjct: 482 PITIEEWDIAIDKKNFGPFYKKDGKTIENALLATTQEQRGELVKQLEENGKVVIDVPGVN 541

Query: 297 PMSATFKG-----------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII------ 339
                               + +++   +     G  R++ +++E ++  +         
Sbjct: 542 DGKVEVSKDLLAIKWVKRVENVREYTPNVIEPSFGIGRILYSLMEHNYWTRASEGGDEAR 601

Query: 340 ----WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
               +P +VAP K+ ++ + ++     +   K+  +L   G     DD    IG +++  
Sbjct: 602 GVLSFPPAVAPTKVLIVPLSSNKDFTPEV-RKLSQKLRSAGVSSRIDDSSASIGKRYSRN 660

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           D LG P  V V  + + D  V ++ R +  +     +++I          +
Sbjct: 661 DELGTPFGVTVDFQTLKDGTVTLRERDSTRQVRAEEDKIIAAIKALVEGTK 711



 Score = 50.5 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 10  ILQENPRDAEIASHKLMLRTGM-----IHQHSKGIYSWLPLGQKALDNVNAIIREEQN-R 63
            L+  P D       L  R        I+    G+Y + P G     NV  + R+     
Sbjct: 72  TLKGQPLDRAALDAMLRRRLFYTPSFEIYGGVSGLYDYGPPGCALQANVIDLWRKHFILE 131

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
              +E+    L   D+   SG  D +   M +     +
Sbjct: 132 EDMLEVDCTVLTPHDVLKTSGHVDKFADWMCKDPKNGE 169


>gi|15903972|ref|NP_359522.1| histidyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|116515787|ref|YP_817338.1| histidyl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|221232832|ref|YP_002511986.1| histidyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|32130105|sp|Q8DN46|SYH_STRR6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|122277816|sp|Q04I50|SYH_STRP2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|254782348|sp|B8ZPP6|SYH_STRPJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|15459628|gb|AAL00733.1| Histidyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|116076363|gb|ABJ54083.1| histidyl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|220675294|emb|CAR69887.1| histidyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|332198937|gb|EGJ13018.1| histidyl-tRNA synthetase [Streptococcus pneumoniae GA47901]
          Length = 429

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 118/409 (28%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENK 275
                      +D     +    ++  S+   +++ +  +        E L  D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQTHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|317478512|ref|ZP_07937671.1| glycyl-tRNA synthetase [Bacteroides sp. 4_1_36]
 gi|316905326|gb|EFV27121.1| glycyl-tRNA synthetase [Bacteroides sp. 4_1_36]
          Length = 513

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 128/395 (32%), Gaps = 57/395 (14%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD-SYGKEMLRLADRNDKAMIYGP 108
           LD +  II +E       E+  P +     W E  +++  +  EM   AD   K  +   
Sbjct: 166 LDELRQIILDE-------EIVCP-ISGTKNWTEVRQFNLMFSTEMGSTADGAMKIYLRPE 217

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   QI   FR+E+  R  + R REF   +   F   P 
Sbjct: 218 TAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFFVK-PG 276

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                +     + L+    LG      R         L+H      D      F  K   
Sbjct: 277 TELDWFKTWKATRLKWHKALGFGDDHYRYHD---HDKLAHYANAATDIEFLMPFGFK--- 330

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                 E         L+   +             NE     + E      R        
Sbjct: 331 ----EVEGIHSRTNFDLSQHEKFSGKNIKYFDPETNESYTPYVIETSIGVDR-------- 378

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                +   MSA++                          +E+      +  P ++AP K
Sbjct: 379 ----MFLSIMSASYCEEK----------------------LENGETRVVLKLPAALAPVK 412

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ +   D    +   +I   L        +D+    IG ++   D +G P  V V  
Sbjct: 413 LAVMPLVKKD-GLPEKAREIIDNLK-FHFHCQYDEKD-SIGKRYRRQDAIGTPYCVTVDH 469

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + D+ V +++R T  +E +++ E+ N  + R S
Sbjct: 470 QTLEDNCVTLRNRDTMQQERVAISELNNIIADRVS 504


>gi|172058096|ref|YP_001814556.1| histidyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
 gi|171990617|gb|ACB61539.1| histidyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
          Length = 426

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/410 (14%), Positives = 110/410 (26%), Gaps = 19/410 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   +RE   R    E+  P  +  +L+        D   KEM  L  R  +     
Sbjct: 18  WQYIENQLREISKRYNYKEIRTPIFEETELFKRGVGETTDIVQKEMFMLEKRGKEQFTLR 77

Query: 108 PTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   F  + +    N P   + I   FR E        +  ++ ++   S    
Sbjct: 78  PEGTAAVVRSFVTNKLYGAANQPVKLFYIGPMFRYERPQAGRFRQLHQYGVEALGSE--E 135

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P       +     Y     +     I    +S         E +V          C   
Sbjct: 136 PAIDAEVISLAMSIYRSFGLKKLKLVINSLGDSES--RAAHREALVNHFKPVAHELCQDC 193

Query: 227 FMDFPIPSENTDFDDIISLNSIVE------QWTAPYAATSDVHNEKLFDSLPENKRVSA- 279
                +         +   +  +        +  P +           D+L     +   
Sbjct: 194 QNRLEVNPLRVLDCKVDRNHPSMATAPSILDFLNPASKEYFDQVLLHLDALGIEYVIDPT 253

Query: 280 --RGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV-VAAVIESSHD 334
             RG++      F   ++     + T     G+ + +     G     +     IE    
Sbjct: 254 LVRGLDYYNHTSFEIMSEAEGFGAITTLCGGGRYNGLVEQIGGPATPGIGFGIGIERLLM 313

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                         I +  +   +        ++   +   G     D +G +   QF  
Sbjct: 314 ALENEGVLPEIDDAIDVFIVAQGNDEVEKTATRLLQLMRLEGLAADRDYLGRKFKGQFKA 373

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           AD L     VI+G + V      +K   TG + D+ L  V +    +   
Sbjct: 374 ADRLKARFTVILGDEEVERGAAALKDMSTGEQIDVPLSAVADTIVAKLKE 423


>gi|125719062|ref|YP_001036195.1| histidyl-tRNA synthetase [Streptococcus sanguinis SK36]
 gi|166228621|sp|A3CR40|SYH_STRSV RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|125498979|gb|ABN45645.1| Histidyl-tRNA synthetase, putative [Streptococcus sanguinis SK36]
          Length = 426

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/402 (14%), Positives = 115/402 (28%), Gaps = 25/402 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
           +   +     +M     + F  +G+ ++ +   S       +                  
Sbjct: 137 SNPATD---VEMIAMAAQFFKDIGITNVSLELNSLGNPESRAAYRQALIDYLTPLKASLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D   P +    +   S+   +++ ++ Y A      E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESSAYFAAVRSMLETLQIPYVI 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               V         IF F T+ +         A G+   +     G     V   +    
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLT--ICAGGRYDGLVAYFGGPETPGVGFGMGLER 311

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      +       + +            ++   L   G     D +  ++ +QF
Sbjct: 312 LLLVLDKQGVELPIETALDVYVAVLGADANGRALELVQALRAQGFAAERDYLDRKLKAQF 371

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             AD       + +G   V   +V +K+        +SL+++
Sbjct: 372 KSADNFKAKTLITLGESEVESGRVTVKNNHNREEITVSLDQI 413


>gi|15920555|ref|NP_376224.1| glycyl-tRNA synthetase [Sulfolobus tokodaii str. 7]
 gi|15621338|dbj|BAB65333.1| 571aa long hypothetical glycyl-tRNA synthetase [Sulfolobus tokodaii
           str. 7]
          Length = 571

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 58/141 (41%), Gaps = 5/141 (3%)

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---HDQVCR 362
           +G+     +     G  R +   + +++  K      S+  +              +   
Sbjct: 417 NGEKIIPHVVEPSFGVERCLYLTLLNAYKEKEGRIVLSLPKYLAPYDVAVFPLLEKEELI 476

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  +++Y  L +   D  +DD G  IG ++A AD +G P  + +  + + D+ V I+ R 
Sbjct: 477 NKAKEVYN-LVRERFDTIFDDSG-SIGKRYARADEIGVPYSITIDPQTLVDNSVTIRDRD 534

Query: 423 TGIREDMSLEEVINYASHRFS 443
           T  +  +++ ++++     F 
Sbjct: 535 TWQQIRVNINDIVSVLERLFK 555



 Score = 51.7 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAI---EMSVPTLQSADLWVESGRYDSYGKEM 93
            G+Y   P+G +  + +  + R       +    E+  P +    +   SG  +++   +
Sbjct: 26  AGLYDIGPIGVRIKNKIIELWRRYFIYDNSEFVVEIETPMITPYKVLEASGHVENFTDPI 85

Query: 94  LRLADRND 101
           +     + 
Sbjct: 86  VECTKCHK 93


>gi|304383920|ref|ZP_07366377.1| glycyl-tRNA synthetase beta subunit [Prevotella marshii DSM 16973]
 gi|304334998|gb|EFM01271.1| glycyl-tRNA synthetase beta subunit [Prevotella marshii DSM 16973]
          Length = 585

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 109/355 (30%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM  L+D  +K  +   T + +  +           +PF   QI   FR+E+  R  
Sbjct: 271 FSTEMGSLSDATNKIYLRPETAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQF 330

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      +     + ++    LG  +   R           H
Sbjct: 331 IFRMREFEQMEMQFFVK-PGTELEWFETWKKTRMKWHQTLGFGAENYRFHD--------H 381

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E +       + +     F                            +     +H+   F
Sbjct: 382 EKLAHYANAASDIEFRMPF---------------------------GFKEVEGIHSRTNF 414

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     K         G    +    +      +             S    A       
Sbjct: 415 DLSQHEK-------FSGKNIKYFDPQTNESYTPYVIETSIGVDRMFLSVMCHAYEE--EQ 465

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           ++S      +  P  +AP K++++ +   D    +   +I   L     +  +D+    I
Sbjct: 466 LQSGDTRTVLKLPAPLAPVKLAVMPLVKKD-GLPEKAREIVDALR-FKFNTHYDEKDA-I 522

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  V +    + D+ V ++ R T  +E + ++ + +    + S
Sbjct: 523 GKRYRRQDAIGTPYCVTIDHNTLQDNCVTLRFRDTMEQERVGIDRLESIIEDKVS 577


>gi|39996759|ref|NP_952710.1| histidyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|46396580|sp|P60915|SYH_GEOSL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|39983647|gb|AAR35037.1| histidyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|298505771|gb|ADI84494.1| histidyl-tRNA synthetase [Geobacter sulfurreducens KN400]
          Length = 413

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 119/412 (28%), Gaps = 39/412 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
             ++ A  R   +  G  E+ +P L+  +L+  S     D   KEM    D+ + A+   
Sbjct: 19  WQHIEATARRVFSLYGFSEIRIPILEKTELFRRSIGDTTDIVEKEMYSFVDKGENAVTMR 78

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  H    ++     Y +   FR E   +    R R+F    A    +T 
Sbjct: 79  PEGTASVMRSYIEHKLYAQDPVAKLYYMGPMFRYERPQKG---RYRQFHQIGAEVTGVTD 135

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCSK 225
                    M   Y      LGL    ++  S   P       + ++          C  
Sbjct: 136 PKVDAQVLTMLCHYFA---ELGLTEPTLQINSLGCPECRPAYRQALIDFLRERLDSLCED 192

Query: 226 DFMDFPIPSENTDFDDIIS-----------LNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
               +                         L+S+       + AT              N
Sbjct: 193 CKRRYQTNPLRALDCKSAHCKEATASAPAMLDSLCAGCDDHFTATRRHLERAGTTYSINN 252

Query: 275 KRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           + V          F       G + ++     + G         +   G        A++
Sbjct: 253 RMVRGLDYYTRTTFELVTGLLGAQSAVAAGGRYDGLISDLGGPAIPGIGFAMGVERIALL 312

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                                 + I A  +  +D   ++   L + G  V  D  G+ + 
Sbjct: 313 LGD-----------QHFVGRPDLFIAALGEEAQDEAFRLMCGLQRNGVAVEMDYEGKSLK 361

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL--EEVINYAS 439
           SQ   +D       +I+G   ++     +K   TG++ ++ L  EEV    +
Sbjct: 362 SQMRRSDKFNARFTLIIGGDELAIGAAVLKAMDTGVQVEVPLTPEEVAARIT 413


>gi|116492878|ref|YP_804613.1| histidyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745]
 gi|122265658|sp|Q03F51|SYH_PEDPA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|116103028|gb|ABJ68171.1| histidyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745]
          Length = 424

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/422 (15%), Positives = 119/422 (28%), Gaps = 21/422 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP   K    V    RE        E+  P  +  +++  S     D   KEM  
Sbjct: 8   GTADILPPFSKEWQFVEQNARETFALYNYEEIRTPIFEKFEVFSRSAGDTSDIVTKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P     +   F  +         P   Y +   FR E        R R
Sbjct: 68  FDDKGGRHIALRPEGTAGVVRAFVENKLYGPEHQKPVKVYYMGPMFRYERPQSG---RLR 124

Query: 154 EFLMKDAYSFDLT-PEGSKHSYNKMFVSYLR--------IFHRLGLKSIPMRAESGPIGG 204
           EF      +F    P+    +         +        + + LG K    R     I  
Sbjct: 125 EFHQIGVEAFGSDSPKIDVETIMMGMDFLKKLKVSGLKLVINTLGDKESRDRYRQALIDY 184

Query: 205 DLSH-EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
              H E +             +         +    +    L+ + E     + +  +  
Sbjct: 185 LEPHFEELSDDSKARLHKNPLRVLDSKDKNDQKIVENAPEILDFLTEDAQKHFTSVKEEL 244

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           +    D + ++  V         IF      S           G  +   +   G   + 
Sbjct: 245 DTLGVDYVVDSSMVRGLDYYNHTIFEIMIADSPLGKGDVTICAGGRYNGLVEELGGPEVS 304

Query: 324 VVAAVI--ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            V   +  E            ++   ++    +   D V  D   K+   L ++      
Sbjct: 305 GVGFGLGVERLLLLLNAETQTTLQSKQLDFYVVGIGDLVQNDV-LKVVHELRQMNFVTEQ 363

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D +  +  +QF  AD L     V +G   ++D   ++K   +G    ++L E IN     
Sbjct: 364 DYLDRKPKAQFKSADKLNAKYVVTIGESEMNDRIFKLKDMHSGEERTVALSE-INTLKDL 422

Query: 442 FS 443
             
Sbjct: 423 LK 424


>gi|46125161|ref|XP_387134.1| hypothetical protein FG06958.1 [Gibberella zeae PH-1]
          Length = 663

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 102/317 (32%), Gaps = 23/317 (7%)

Query: 147 FGVMRSREFLMKDAYSFD---LTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMRAESGPI 202
           + + R  +FL K     +        +    +     +    F   G       A+    
Sbjct: 331 YFLARIHQFLQKIGVDMNKLRFRQHMANEMAHYACDCWDAELFTSSGWIECVGCADRSAY 390

Query: 203 GGDLSHEF----IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
              +  +     +V+ +  ET +   +  +D                   VE   A   A
Sbjct: 391 DLSVHAKKTGAPLVVREQRETPLVIEEWQIDIE---RKKFGPQFKKDAKTVE---AALLA 444

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           T     EKL   L +N  ++     VG      +K S+ +    +  + ++    +    
Sbjct: 445 TPQEQREKLAKELSDNGSITLEVAGVGDGKVQVSKDSIAIEFRKRVENTREFVPNVIEPS 504

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---------HDQVCRDACEKIY 369
            G  R++ +++E S   +G    D           +            +   +   +++ 
Sbjct: 505 FGIGRILYSLMEHSFWTRGTEGGDEARGVLSFPPIVAPTKVLLVPLSSNPQFKPLLKQLS 564

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            RL   G     DD    IG +++  D LG PL + +  +   D  V ++ R +  +   
Sbjct: 565 QRLRSAGISSRVDDSSASIGKRYSRNDELGTPLGITIDFQTAQDGSVTLRDRDSTNQVRA 624

Query: 430 SLEEVINYASHRFSNNR 446
             E++I+        ++
Sbjct: 625 EQEKIIDAIKSLVDGSK 641



 Score = 45.5 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           G++ + P G      V    R+        +E+    L   ++   SG  D +   M + 
Sbjct: 40  GLFDYGPPGCALQAAVIDQWRKHFILEEDMLEVDCSVLTPHEVLKTSGHVDKFADWMCKD 99

Query: 97  ADRND 101
               +
Sbjct: 100 PKNGE 104


>gi|149002958|ref|ZP_01827869.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|149006905|ref|ZP_01830586.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|225855611|ref|YP_002737123.1| histidyl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|254782350|sp|C1CH52|SYH_STRZJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|147758961|gb|EDK65956.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147761506|gb|EDK68471.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|225722383|gb|ACO18236.1| histidyl-tRNA synthetase [Streptococcus pneumoniae JJA]
          Length = 429

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 118/409 (28%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETISMAAYFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENK 275
                      +D     +    ++  S+   +++ +  +        E L  D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQTHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|20094974|ref|NP_614821.1| histidyl-tRNA synthetase [Methanopyrus kandleri AV19]
 gi|32130124|sp|Q8TV61|SYH_METKA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|19888228|gb|AAM02751.1| Histidyl-tRNA synthetase [Methanopyrus kandleri AV19]
          Length = 421

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 75/421 (17%), Positives = 142/421 (33%), Gaps = 42/421 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE-SGRYDSYGKEMLRL 96
           G   + P   +A   +   + +     G  E+  PT + A L+ E SG  +   +EM   
Sbjct: 13  GTRDFTPEEMRARRWLERYLLDVFRSYGYEEVLTPTFEHAKLFEEKSG--EEILEEMYVF 70

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +   + + +K+  + P     I   FR E   R    R REF 
Sbjct: 71  KDKKGRKLALRPEMTAPVVRFYNAELKTRPH-PLKLAYIVNCFRYEQPQRG---RWREFW 126

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM--------RAESGPIGGDLSH 208
                 F      +     ++           G   + +          E   IG D+ +
Sbjct: 127 QAGVEVFGSDRPEADVEVIELTYRIFDGILPSGAFEVRVGHLGILRGLLEEYGIGEDVQN 186

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSE-------NTDFDDIISLNSIVEQWTAPYAATSD 261
           +   L D GE     +    +    +         ++ ++ +S     E+        SD
Sbjct: 187 KVAHLVDKGELDEVKTLLPAEPAEKALAVVTARSESEVEEAVSGKERAERALENLMEISD 246

Query: 262 VHNEKLFD-----SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQ 313
              E   D     S+          +   H+   G          +       G      
Sbjct: 247 ALREAGVDHELDFSVARGLDYYTGMVFEIHVPELGGGSQCAGGGRYDDLVKELGGPDVPA 306

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +G   IG  R++ A         G+    ++    +    I            +I A+L 
Sbjct: 307 VGM-AIGFDRLLLAAELYDRIPDGVEETRALLIPLVRSGKIW-----------EIAAKLR 354

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           K+G  V  +  G+ I    ++AD L +   VIVG + + +  V +K+  TG++E++ L++
Sbjct: 355 KLGWVVNVEVSGKHIRKALSLADSLEYDYAVIVGERELKEGYVSVKNLKTGVQEEVPLDQ 414

Query: 434 V 434
           +
Sbjct: 415 L 415


>gi|237650856|ref|ZP_04525108.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974]
 gi|237822706|ref|ZP_04598551.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974M2]
          Length = 425

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 118/409 (28%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETISMAAYFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENK 275
                      +D     +    ++  S+   +++ +  +        E L  D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQTHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|196231356|ref|ZP_03130215.1| glycyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
 gi|196224692|gb|EDY19203.1| glycyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
          Length = 588

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 63/383 (16%), Positives = 121/383 (31%), Gaps = 53/383 (13%)

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           ND A +   T + +          S + +PF   QI   FR+E+ PR    RSREF   +
Sbjct: 210 NDIAYLRPETAQAIFAQFKNVVDSSRQRVPFGICQIGKAFRNEVTPRNFTFRSREFEQME 269

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
              F + P+ +  +      ++         +                 ++      G  
Sbjct: 270 LE-FFIKPDEAIEAVCGSVAAWSEGADLSVPQDNWGWEMWHRYWVKERTDYYAGIGLGAD 328

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS--------------DVHNE 265
            +       +          D +       E+     A                 DV +E
Sbjct: 329 VLDYHWQTKEELAHYARACVDILFKFPFGTEELEGLAARGDFDLMAHQTASRKPMDVFDE 388

Query: 266 KLFDS-----------LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           ++ ++           L E K+   R  E G +     +        FKG     +   +
Sbjct: 389 EVKNAFAKWTDEQRAALVERKKAEHRAKEKGGLT--DAQVDEWCQKLFKG----FYVPHV 442

Query: 315 GSYGIGAMRVVAAVIESSH-------------DGKGIIWPDSVAPFKISLINIKAHDQVC 361
                G  R+  AV+ +++                 +     +AP K+ +  +  +    
Sbjct: 443 IEPSAGLDRLALAVLSNAYSEVEKTDAKGKSETLYVMRLHPRLAPVKVGVFPLLKNKPEL 502

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV-----GSKFVS-DSK 415
                +++  L K     F+D+ G  IG ++A  D  G P  + +     G K       
Sbjct: 503 VAKAREVFELLRKH-FSAFYDE-GGSIGKRYARQDEAGTPFCLTIDFETLGEKGEELKDT 560

Query: 416 VEIKHRLTGIREDMSLEEVINYA 438
           V ++HR  G +E + + E++   
Sbjct: 561 VTLRHRDDGSKERVKISELLGKL 583



 Score = 46.3 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 10/93 (10%)

Query: 12 QENPRDAEIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ--NR 63
          +E P+  +I S  L  R G + Q S       G + + PLG +   N+          +R
Sbjct: 5  KEIPQMEKIVS--LAKRRGFVFQSSEIYGGINGFWDYGPLGAELKRNLRDTWWRTMTRDR 62

Query: 64 TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
             + +    +    +W  SG  D++   M   
Sbjct: 63 EDVVGLDATIIMHPAIWKASGHVDTFADLMREC 95


>gi|53723541|ref|YP_103004.1| histidyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|67639883|ref|ZP_00438712.1| histidine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|76811640|ref|YP_333748.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121598300|ref|YP_993153.1| histidyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124385953|ref|YP_001026072.1| histidyl-tRNA synthetase [Burkholderia mallei NCTC 10229]
 gi|126449975|ref|YP_001080660.1| histidyl-tRNA synthetase [Burkholderia mallei NCTC 10247]
 gi|167002242|ref|ZP_02268032.1| histidine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|167893949|ref|ZP_02481351.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 7894]
 gi|167910640|ref|ZP_02497731.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 112]
 gi|167918669|ref|ZP_02505760.1| histidyl-tRNA synthetase [Burkholderia pseudomallei BCC215]
 gi|217421587|ref|ZP_03453091.1| histidine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|237812548|ref|YP_002896999.1| histidine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|254177586|ref|ZP_04884241.1| histidyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|254189058|ref|ZP_04895569.1| histidyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|254199950|ref|ZP_04906316.1| histidyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|254206283|ref|ZP_04912635.1| histidyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|254260769|ref|ZP_04951823.1| histidine--tRNA ligase [Burkholderia pseudomallei 1710a]
 gi|254297428|ref|ZP_04964881.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|254358302|ref|ZP_04974575.1| histidyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|81685079|sp|Q62JW5|SYH_BURMA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123598924|sp|Q3JRQ5|SYH_BURP1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166227948|sp|A3MK74|SYH_BURM7 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166227949|sp|A2S2A3|SYH_BURM9 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166227950|sp|A1V4K0|SYH_BURMS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|52426964|gb|AAU47557.1| histidyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|76581093|gb|ABA50568.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121227110|gb|ABM49628.1| histidyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124293973|gb|ABN03242.1| histidine--tRNA ligase [Burkholderia mallei NCTC 10229]
 gi|126242845|gb|ABO05938.1| histidine--tRNA ligase [Burkholderia mallei NCTC 10247]
 gi|147749546|gb|EDK56620.1| histidyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|147753726|gb|EDK60791.1| histidyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|148027429|gb|EDK85450.1| histidyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|157806820|gb|EDO83990.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|157936737|gb|EDO92407.1| histidyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|160698625|gb|EDP88595.1| histidyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|217395329|gb|EEC35347.1| histidine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|237505085|gb|ACQ97403.1| histidine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|238520494|gb|EEP83953.1| histidine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|243062059|gb|EES44245.1| histidine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|254219458|gb|EET08842.1| histidine--tRNA ligase [Burkholderia pseudomallei 1710a]
          Length = 446

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 115/426 (26%), Gaps = 29/426 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + +   FR E   R    R R+F
Sbjct: 76  FVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYLGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 TGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               ++     +     P+   +T    +  +     Q        S  H + L   L  
Sbjct: 193 QHVDKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPQLIDFLGDVSRAHFDGLQQLLKA 252

Query: 274 NKR------VSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           N           RG++     +F + T           G        Q+G     A    
Sbjct: 253 NNLPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWA 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW---- 381
             V       K            + +++        R+    +  RL   G DV      
Sbjct: 313 MGVERILELLKEEHLVPEQEGVDVYVVHQG---DAAREQAFIVAERLRDTGLDVILHCSA 369

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTG------IREDMSLEEV 434
           D  G    SQ   AD  G    VI G   V++  V +K  R TG      +++ + +E +
Sbjct: 370 DGAGASFKSQMKRADASGAAFAVIFGEDEVANGTVSVKPLRGTGAEGEKNVQQSVPVESL 429

Query: 435 INYASH 440
             +  +
Sbjct: 430 TEFLIN 435


>gi|67906698|gb|AAY82781.1| predicted glycyl-tRNA synthetase [uncultured bacterium
           eBACred22E04]
          Length = 323

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 113/356 (31%), Gaps = 59/356 (16%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +   +  + D +  A +   T +++  +       + R+LPF   QI   FR+E+ PR  
Sbjct: 2   FETNVGPVIDDSSTAYLRPETAQQIYINFKNVIDSTSRSLPFGIAQIGKSFRNEITPRNF 61

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIG 203
           + R REF   +   F +TP      + K     L  +   G+    +       +     
Sbjct: 62  IFRVREFEQMELE-FFVTPGEDDDWHKKWVDERLVWWVNQGIPKDKLELLHVTGDDLAHY 120

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
              + + +     G  ++    +  DF + S   +  D+     ++E             
Sbjct: 121 SKSTVDIMYQFPHGLEELEGIANRTDFDLGSHTKNQKDLNIDAKVMENE----------- 169

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                                          S       +    +     +     G  R
Sbjct: 170 -------------------------------SSNTRLAVQNESKEWIVPYVIEPSAGVDR 198

Query: 324 VVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            V A+I  ++  + +              ++P K ++I +K ++         +   L K
Sbjct: 199 GVLAIINEAYTIEDLGDNKQRTLLKLKKHLSPIKAAVIPLKRNNDDLVKLAHDVKTSLQK 258

Query: 375 VGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
                V  ++ G  IG  +   D +G PL + +    +  + V I+ R +  +  +
Sbjct: 259 FQIGRVVVENTG-NIGKSYRKHDEIGTPLCITIDFDSLEKNTVTIRDRDSMEQRVL 313


>gi|254499338|ref|ZP_05112009.1| histidyl-tRNA synthetase [Legionella drancourtii LLAP12]
 gi|254351443|gb|EET10307.1| histidyl-tRNA synthetase [Legionella drancourtii LLAP12]
          Length = 425

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 68/425 (16%), Positives = 118/425 (27%), Gaps = 28/425 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        +           G  E+  P ++S  L+  + G   D   KEM  
Sbjct: 10  GMNDILPDKTLLWRYIEQTFINCLTNYGYQEIRFPLVESTQLFKRTIGEITDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D N  ++   P            H   +      +Y     FR E   R    +  + 
Sbjct: 70  FNDLNGDSITLRPEGTAGCVRACLEHGLLHNQQQKLWYL-GPMFRHERPQRGRYRQFNQL 128

Query: 156 LMKDAYSFDLTPE------GSKHSYNKMF-VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            ++         E        K      F        + LG  S   + +S  +     H
Sbjct: 129 GVEAFGMAGAQAELELISLCRKFWIQFGFADLVQLQVNTLGELSERQKYKSILVDYLNDH 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ-----WTAPYAATSDVH 263
              +  D+           +D   P       +   L  ++E      + A       + 
Sbjct: 189 TAQLDEDSKRRLTRNPLRILDSKNPEMQQLVANAPKLIDVLEGKSKEHFQAFCNGLDALQ 248

Query: 264 NEKLFDSLPENKRVSARGIEV-GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              + +       V  RG++  GH  +      L   AT       D  V+         
Sbjct: 249 IPYVINP------VLVRGLDYYGHTVFEWVTDRLGSQATICAGGRYDILVEQLGGNATPA 302

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSKVGCDV 379
              A  +E        +        K SL  I  + +         E I         +V
Sbjct: 303 AGFALGVERIFLLMETLNLLPQETKKNSLFIIGTNKEAIVKGLVIAEAIRNAFPA--LEV 360

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYA 438
             +  G    SQF  AD  G  L +++G   +++ K+ IK    G  +  +    +  + 
Sbjct: 361 IVNTAGGSFKSQFKKADKSGARLALVLGEDELANQKISIKDLRNGTEQITVDQSAINQFI 420

Query: 439 SHRFS 443
                
Sbjct: 421 HEYLK 425


>gi|302345856|ref|YP_003814209.1| glycine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
 gi|302149762|gb|ADK96024.1| glycine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
          Length = 515

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 118/364 (32%), Gaps = 66/364 (18%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   AD  +K  +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 198 FSTEMGASADATNKIYLRPETAQGIFVNFLNVQKTGRMKLPFGICQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           V R REF   +   F   P      +       L     LG              GD ++
Sbjct: 258 VFRMREFEQMEMQFFCQ-PGTEMKWFEYWKKHRLAWHEGLG-------------MGDDNY 303

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            F                                        +  A YA  +      + 
Sbjct: 304 RFHDH-------------------------------------EKLAHYANAATDIEFHMP 326

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               E + + +R            KYS      F     +++   +    IG  R+  +V
Sbjct: 327 FGFKEVEGIHSRTNFDLSQHE---KYSGRQVKYFDPERNENYTPYVVETSIGVDRMFLSV 383

Query: 329 IESSHDGK---------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           +  S+  +          +  P+ +AP K +++ +   D    +  ++I   L     + 
Sbjct: 384 MCHSYTEEALENGSSRVVLKLPEPLAPVKCAVLPLVNKD-GLPEKAQEIVNSLK-FHFNT 441

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              +  + IG ++   D +G P  V V    ++D+ V +++R +  +E + +E++     
Sbjct: 442 HM-EAKDSIGKRYRRQDAIGTPFCVTVDGDTLTDNTVTLRYRDSMKQERVPVEKLREIIE 500

Query: 440 HRFS 443
            R S
Sbjct: 501 DRVS 504


>gi|160887863|ref|ZP_02068866.1| hypothetical protein BACUNI_00266 [Bacteroides uniformis ATCC 8492]
 gi|270295531|ref|ZP_06201732.1| glycyl-tRNA synthetase [Bacteroides sp. D20]
 gi|156862693|gb|EDO56124.1| hypothetical protein BACUNI_00266 [Bacteroides uniformis ATCC 8492]
 gi|270274778|gb|EFA20639.1| glycyl-tRNA synthetase [Bacteroides sp. D20]
          Length = 513

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 128/395 (32%), Gaps = 57/395 (14%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD-SYGKEMLRLADRNDKAMIYGP 108
           LD +  II +E       E+  P +     W E  +++  +  EM   AD   K  +   
Sbjct: 166 LDELRQIILDE-------EIVCP-ISGTKNWTEVRQFNLMFSTEMGSTADGAMKIYLRPE 217

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   QI   FR+E+  R  + R REF   +   F   P 
Sbjct: 218 TAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFFVK-PG 276

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                +     + L+    LG      R         L+H      D      F  K   
Sbjct: 277 TELDWFKSWKATRLKWHKALGFGDDHYRYHD---HDKLAHYANAATDIEFLMPFGFK--- 330

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                 E         L+   +             NE     + E      R        
Sbjct: 331 ----EVEGIHSRTNFDLSQHEKFSGKNIKYFDPETNESYTPYVIETSIGVDR-------- 378

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                +   MSA++                          ++S      +  P ++AP K
Sbjct: 379 ----MFLSIMSASYCEE----------------------TLDSGESRVVLKLPAALAPVK 412

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ +   D    +   +I   L        +D+    IG ++   D +G P  V V  
Sbjct: 413 LAVMPLVKKD-GLPEKAREIIDNLK-FHFHCQYDEKD-SIGKRYRRQDAIGTPYCVTVDH 469

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + D+ V +++R T  +E +++ E+ N  + R S
Sbjct: 470 QTLEDNCVTLRNRDTMQQERVAISELNNIIADRVS 504


>gi|328945234|gb|EGG39388.1| histidine--tRNA ligase [Streptococcus sanguinis SK1087]
          Length = 426

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/407 (14%), Positives = 118/407 (28%), Gaps = 35/407 (8%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
           +   +     +M     + F  +G+ ++ +   S       +                  
Sbjct: 137 SNPATD---VEMIAMAAQFFKDIGITNVSLELNSLGNPESRAAYRQALIDYLTPLKPSLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D   P +    +   S+   +++ ++ Y A      E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESSTYFAAVRSMLETLQIPYVI 253

Query: 273 ENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
               V         IF F     G++ ++     + G        +    G G       
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAYFGGPETPGVGFGMGLERLL 313

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++      +  I         +                 ++   L   G     D +  +
Sbjct: 314 LVLDKQGVELPIETALDVYVAVLGTGANGR-------ALELVQALRAQGFAAERDYLDRK 366

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + +QF  AD+      + +G   V   +V +K+        +SL+++
Sbjct: 367 LKAQFKSADIFKAKTLITLGESEVESGQVTVKNNYNREEITVSLDQI 413


>gi|227485268|ref|ZP_03915584.1| histidine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236728|gb|EEI86743.1| histidine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
          Length = 428

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 62/426 (14%), Positives = 129/426 (30%), Gaps = 35/426 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G+   LP  Q A D +  II E   +   + +  P ++  ++    G  ++  +     
Sbjct: 10  AGVMELLPEDQLAFDRMKNIIEETFKKFQFLPIDTPVIEKNEILFAKGGGETEKQIYEIA 69

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           ++  D ++ +  T          +   +  N PF  Y I   +R E   +    R REF 
Sbjct: 70  SETRDMSLRFDLTVPLARY---VAEHFADLNFPFKRYHIAKVYRGERNQKG---RYREFY 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR---------------LGLKSIPMRAESGP 201
             D            +      V Y                      G  +     ++  
Sbjct: 124 QCDIDIIGHNSLAIANDAIPPRVIYEIFNKLDTPDVTFKINNRKLLNGFLNALDITDTTD 183

Query: 202 IGG-----------DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           +             +  +E + L D  +     +    D          DD +  N   E
Sbjct: 184 VLRLIDKKDKIGMENTKNELLELVDNQKADKILAFIASDLKNEELLASLDDFVDNNLYRE 243

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGK 308
                    S + +  + D   +      RG++   G ++         + +   G   +
Sbjct: 244 GLCELKTVYSYMIHLGIPDKNIKIDPSITRGLDYYTGTVYETFVNGYENIGSVSSGGRYE 303

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                     +  + +   +    +  K I   ++       ++ I   D+        I
Sbjct: 304 KLAENFSKQALPGVGMSIGLTRLFYQLKEIGLVNTNESRLTDILIIPMSDEENF-YAIDI 362

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L + G        G ++  +F+ AD +G     I+G     + KV I++  TG +E 
Sbjct: 363 LNKLHEEGKRADIYLEGGKLKKKFSYADKVGVKYAYIIGQSEREEGKVTIRNMQTGEQEL 422

Query: 429 MSLEEV 434
           +    +
Sbjct: 423 VDFANL 428


>gi|218780599|ref|YP_002431917.1| histidyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
 gi|226737068|sp|B8FKS7|SYH_DESAA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|218761983|gb|ACL04449.1| Histidyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
          Length = 419

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/417 (13%), Positives = 119/417 (28%), Gaps = 17/417 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS--YGKEMLR 95
           G    LP   +   ++ +  R      G  E+ +P ++S +L+      D+    KEM  
Sbjct: 7   GFRDILPGQVELWQDIESKARVLLENFGFREIRLPIMESTELFARGIGADTDIVEKEMYT 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D   +     P     +   +  H  +  +    FY I   FR E   +    R R+F
Sbjct: 67  FPDSKGRGQTLRPEATASVVRSYIEHGYAGSDPVQKFYTIGPMFRHERPQKG---RYRQF 123

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +A  F +    +      M   +        + +        P       E ++   
Sbjct: 124 YQINAEMFGVASPLADVQIMYMLHLFFTGLDVPDVVTHVNSLGC-PECRPKFREALISFV 182

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEKLFDSLP 272
           + +    CS                 +      V+               H E +   L 
Sbjct: 183 SDKMDRLCSDCQRRADANPLRVIDCKVPGCKEAVQGAPSIQDHLCPDCKEHFEAVIKGLD 242

Query: 273 ------ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                 E      RG++      F  + +L  +       G+   +     G        
Sbjct: 243 GLNVPYEIDPRLVRGLDYYTRTTFEVQTTLLGAQNAVAGGGRYDGLVKILGGKETP--AI 300

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                      ++  +         + I A     R          +  G     D  G+
Sbjct: 301 GFAVGFDRLAALLGAEEKDFTVPPALFIAALGDEARKIAFGWLCDFNARGVRAEMDYEGK 360

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + SQ   A+       +I+G   + +    +++  T  +E+++L+ + +  +   +
Sbjct: 361 SLKSQMKQANRFNAGRVLILGENELQNGMAVLRNMDTKEQEEVALDGLTDRVAALIN 417


>gi|156937107|ref|YP_001434903.1| anticodon-binding domain-containing protein [Ignicoccus hospitalis
           KIN4/I]
 gi|156566091|gb|ABU81496.1| Anticodon-binding domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 552

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 85/312 (27%), Gaps = 30/312 (9%)

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS--------IPMRAESGPIGGD 205
           E +                 + +      +      L               ++ P    
Sbjct: 222 EVVRYGCDISCSDGFLRCDEFKEHKQVVEKYADPNDLPFALFEQLLLFREEEDTFPCYR- 280

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            + EF V        V    +  D  +        +   L     ++   Y  + ++  E
Sbjct: 281 -TKEFHV--PKVRIFVPSFSEASDVALTLHELIHTEAEKLGM---KYVVSYTVSEELFEE 334

Query: 266 K---LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
               +   +  + R +   +   +  +   +  +  S  +    G     +   +G    
Sbjct: 335 AKDLIIKLVKRDNRCAYLRVVKSNEIFIDAEMYVINSMGYPVELGTWKMRKALMWGREVY 394

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLIN------------IKAHDQVCRDACEKIYA 370
            V AA + S      +I+  +    K                 +    +        +  
Sbjct: 395 SVSAAPLGSFERFAYVIFDKAAKDLKSGETPELPAWLSPIQVRVIPKSRDVLPYALTVAE 454

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L + G  V  DD    +  +   A     P  +++  +     +V +  R T  RED+S
Sbjct: 455 ELRERGIRVDVDDRNVPLSRKLKDAGEEWVPFLLLIDKREEKLGRVILMRRKTNDREDVS 514

Query: 431 LEEVINYASHRF 442
           LEEVI   S   
Sbjct: 515 LEEVIRVVSEEV 526


>gi|288803216|ref|ZP_06408650.1| glycine--tRNA ligase [Prevotella melaninogenica D18]
 gi|288334257|gb|EFC72698.1| glycine--tRNA ligase [Prevotella melaninogenica D18]
          Length = 515

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 118/364 (32%), Gaps = 66/364 (18%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   AD  +K  +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 198 FSTEMGASADATNKIYLRPETAQGIFVNFLNVQKTGRMKLPFGICQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           V R REF   +   F   P      +       L     LG              GD ++
Sbjct: 258 VFRMREFEQMEMQFFCQ-PGTEMKWFEYWKKHRLAWHEGLG-------------MGDENY 303

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            F                                        +  A YA  +      + 
Sbjct: 304 RFHDH-------------------------------------EKLAHYANAATDIEFHMP 326

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               E + + +R            KYS      F     +++   +    IG  R+  +V
Sbjct: 327 FGFKEVEGIHSRTNFDLSQHE---KYSGRQVKYFDPERNENYTPYVVETSIGVDRMFLSV 383

Query: 329 IESSHDGK---------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           +  S+  +          +  P+ +AP K +++ +   D    +  ++I   L     + 
Sbjct: 384 MCHSYTEEALENGSSRVVLKLPEPLAPVKCAVLPLVNKD-GLPEKAQEIVNSLK-FHFNT 441

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              +  + IG ++   D +G P  V V    ++D+ V +++R +  +E + +E++     
Sbjct: 442 HM-EAKDSIGKRYRRQDAIGTPFCVTVDGDTLTDNTVTLRYRDSMKQERVPVEKLREIIE 500

Query: 440 HRFS 443
            R S
Sbjct: 501 DRVS 504


>gi|238785322|ref|ZP_04629311.1| Histidyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
 gi|238713775|gb|EEQ05798.1| Histidyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
          Length = 433

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/420 (13%), Positives = 126/420 (30%), Gaps = 27/420 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        + +I+++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 19  GMNDYLPADTAIWQRIESILKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEKEMYT 78

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 79  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRYERPQKG---RYRQF 134

Query: 156 LMKDAYSFDLTPEGSKHS----YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
               A  F L              + + +     H     +     ++     +    F+
Sbjct: 135 HQLGAEVFGLQGPDIDAELILLTARWWRALGISEHVQLELNSIGSLDARADYREALVTFL 194

Query: 212 VLA------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHN 264
                    D            +D   P      +D   L+  +++ +   +A   ++ +
Sbjct: 195 EQHVEVLDEDCKRRMYSNPLRVLDSKNPDVQQLLNDAPKLSDYLDEESKQHFAGLCELLD 254

Query: 265 EKLFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +         + V         +F       G + ++     + G    +      +  +
Sbjct: 255 QASIPYTVNERLVRGLDYYNRTVFEWVTNSLGAQGTVCAGGRYDGL--VEQLGGRATPAV 312

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G    +  ++             +     +                E +   +  +    
Sbjct: 313 GFAMGLERLVLLVQAVNADFQVPATVDVYVISSGQNTQSAAML-LAESLRDAMPTLKLMT 371

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +   G  +  QF  AD  G  + +++G   V+  +V +K    G +E ++  +V    +
Sbjct: 372 NY--GGGNVKKQFTRADKWGASVALMLGESEVAADQVVVKDLRNGEQETLAQADVAARLA 429


>gi|329956027|ref|ZP_08296798.1| glycine--tRNA ligase [Bacteroides clarus YIT 12056]
 gi|328524786|gb|EGF51840.1| glycine--tRNA ligase [Bacteroides clarus YIT 12056]
          Length = 513

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 70/395 (17%), Positives = 128/395 (32%), Gaps = 57/395 (14%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD-SYGKEMLRLADRNDKAMIYGP 108
           LD +  II +E       E+  P +     W E  +++  +  EM   ++   K  +   
Sbjct: 166 LDELRQIILDE-------EIVCP-ISGTKNWTEVRQFNLMFTTEMGSTSEGAMKIYLRPE 217

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   QI   FR+E+  R  + R REF   +   F   P 
Sbjct: 218 TAQGIFVNYLNVQKTGRMKIPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFFVK-PG 276

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                +     + L+    LG      R         L+H      D      F  K   
Sbjct: 277 TELDWFKTWKATRLKWHKALGFGDDHYRYHD---HDKLAHYANAATDIEFLMPFGFK--- 330

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                 E         L+   +             NE     + E      R        
Sbjct: 331 ----EVEGIHSRTNFDLSQHEKFSGKNIKYFDPETNESYTPYVIETSIGVDR-------- 378

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                +   MSA++                          +E+      +  P ++AP K
Sbjct: 379 ----MFLSIMSASYCEE----------------------QLENGETRVVLKLPAALAPVK 412

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ +   D    +   +I   L        +D+    IG ++   D +G P  V V  
Sbjct: 413 LAVMPLVKKD-GLPEKAREIIDNLK-FHFHCQYDEKD-SIGKRYRRQDAIGTPYCVTVDH 469

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + D+ V +++R T  +E +++ E+ N  + R S
Sbjct: 470 QTLEDNCVTLRNRDTMQQERVAISELNNIIADRVS 504


>gi|330940966|ref|XP_003306011.1| hypothetical protein PTT_19018 [Pyrenophora teres f. teres 0-1]
 gi|311316712|gb|EFQ85899.1| hypothetical protein PTT_19018 [Pyrenophora teres f. teres 0-1]
          Length = 657

 Score = 91.0 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 57/145 (39%), Gaps = 6/145 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              +++   +     G  R+  A+ E  +  +      +V  F  ++   K      + +
Sbjct: 492 ETMREYTPNVIEPSFGIGRIFYALCEHVYWTREQDEARAVLSFPPAVAPTKVLIVPLSSN 551

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   K+  +L ++G     D  G  IG ++A  D LG PL + +  + + D+   +
Sbjct: 552 PDFEPFVRKLKDKLRRLGISNRVDASGASIGKRYARNDELGTPLGITIDFQSIKDNTFTL 611

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +   SL+E+    ++   
Sbjct: 612 RDRDTTEQVRSSLDEIAKAIANIVK 636



 Score = 45.9 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G    DN+  I RE        +++    L + ++   SG  D +   M +
Sbjct: 39  AGLYDYGPPGSALTDNIVDIWREHFVLEEDMLKVDPTILTTHEVLKTSGHVDKFADWMSK 98

Query: 96  LADRND 101
             D  +
Sbjct: 99  DPDTGE 104


>gi|182685058|ref|YP_001836805.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|229558735|sp|B2IN41|SYH_STRPS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|182630392|gb|ACB91340.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
          Length = 429

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 120/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKEAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVSYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I    +       ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVTLPIENALDVYIAVLGEGANIKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFVAKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|168494122|ref|ZP_02718265.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|183575890|gb|EDT96418.1| histidyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
          Length = 429

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 120/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKEAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVSYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I    +       ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVTLPIENALDVYIAVLGEGANIKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFVAKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|116620657|ref|YP_822813.1| histidyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
 gi|122255184|sp|Q028M4|SYH_SOLUE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|116223819|gb|ABJ82528.1| histidyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
          Length = 414

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 64/431 (14%), Positives = 120/431 (27%), Gaps = 45/431 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MI    KG    LP   +  + V  + R         E+  P  +   L+        D 
Sbjct: 1   MIKAV-KGTRDLLPPSTEVWNRVEQVARAIFRAYNYHEIRTPIFEETQLFSRGVGTETDI 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    DR+  ++   P +   +   +  H    R      Y I   FR E RP+ G
Sbjct: 60  VTKEMYTFEDRDGSSLTLRPENTASVIRAYIEHRLDQRPGVQKLYYIGPMFRRE-RPQKG 118

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR--------------IFHRLGLKSIP 194
             R   F +        +P         +                      +        
Sbjct: 119 RYRQF-FQIGAEAIGSESPVVDAEVIELVVEILKGVGLSGFKLLINSVGDHNCRPQYVEK 177

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
           ++AE       +  +    A+T   +V   K   D PI        D +           
Sbjct: 178 LKAELKDKAAGMCGDCQRRAETNPLRVLDCKVEADQPIIDALPSIVDYLCEPCRAHFEAV 237

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHY 311
               T      ++   +        R          G + S+     + G   + G   +
Sbjct: 238 KSYLTDRGIEYEVRPRMVRGLDYYMRTTFEVVHGALGAQNSVLGGGRYDGLAESLGSRVH 297

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                + IG  R+V             +  +   P     + I    +        +   
Sbjct: 298 APGIGFSIGEDRLV-------------MSVEGDQPASQLDLCIAPLGEAAVRHAAILARD 344

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             + G  V   +     G +   A    +  G    +I+G   ++  +  +K+  TG + 
Sbjct: 345 FRRSGHSVELVE-----G-KLKRAMELANKFGARYTLIIGDNEIAAGRYALKNMATGEQV 398

Query: 428 DMSLEEVINYA 438
           +++ +E+    
Sbjct: 399 ELTRDEIAARL 409


>gi|312884305|ref|ZP_07744014.1| histidyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368078|gb|EFP95621.1| histidyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 422

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 63/422 (14%), Positives = 121/422 (28%), Gaps = 36/422 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        +   ++   +  G  E+ +P ++   L+  + G   D   KEM    DRN
Sbjct: 15  LPTQSPLWHKLENAVKNVVSVYGYSEVRMPIVEMTQLFSRAIGEVTDVVEKEMYTFEDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P            H   Y      +Y +   FR E   +    R R+F     
Sbjct: 75  GDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWY-MGPMFRHERPQKG---RYRQFTQCGV 130

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
             F L           M     R         + + +           E +V        
Sbjct: 131 EVFGLNGPDVDAELIMMTARLWRELGIDKHVRLELNSIGSLQARADYREALVGFLEQHID 190

Query: 221 VF---CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD-------- 269
           V    C +     P+   +T   +I ++     + +      S  H + L +        
Sbjct: 191 VLDEDCKRRMHTNPLRVLDTKNAEIQAILGDAPKLSDYLDEESKQHFQGLCELLDSVGIE 250

Query: 270 -----SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAM 322
                 L        R +        G + ++     + G              + +G  
Sbjct: 251 YSVNQRLVRGLDYYNRTVFEWITESLGAQGTICGGGRYDGLVEQLGGKSTPAVGFAMGLE 310

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVF 380
           R+V  +     D             +   + +    +    A  K+   L +   G  V 
Sbjct: 311 RLVLMLETLELDSVR----------RGVDVYVVTAGEGTLLAGMKLAEALREEVPGLRVM 360

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
               G     QF  AD +G  + +++G   VS+  V +K  + G +      +++   + 
Sbjct: 361 SHFGGGNFKKQFKRADKVGAAVALVLGEDEVSEGTVVLKDLIGGTQNTYPQAQIVTKLAE 420

Query: 441 RF 442
             
Sbjct: 421 LV 422


>gi|16800623|ref|NP_470891.1| histidyl-tRNA synthetase [Listeria innocua Clip11262]
 gi|32130133|sp|Q92BJ3|SYH_LISIN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|16414042|emb|CAC96786.1| histidyl-tRNA synthetase [Listeria innocua Clip11262]
          Length = 425

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 58/427 (13%), Positives = 115/427 (26%), Gaps = 30/427 (7%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            + +   +        E+  P  +  +L+        D   KE
Sbjct: 5   LPRGTRDILPEEVSKWHFLESAFNKVCENYQYEEIRTPIFEHTELFERGVGDSTDIVSKE 64

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +   F  H      + P   Y  +  FR E        R
Sbjct: 65  MYTFLDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGG---R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF- 210
            R+F      +                   +  F ++GL +I +   S            
Sbjct: 122 QRQFTQMGIEALGSDDPSIDVEV---ISLAMEFFRKIGLTNIKLVINSLGDKESRLKHRE 178

Query: 211 ----IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E    C       P+   +   D    L              S  + E 
Sbjct: 179 ALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFEN 238

Query: 267 LFDSLP------ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           +   L       E      RG++      F   +      + T     G+ H +     G
Sbjct: 239 VKKYLTALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVKEFGG 298

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                +   +              ++   K   + +             +  +L + G  
Sbjct: 299 PDTPGIGFGIGVERILLALEKAEINIPETKPLEVYVITAQPEAELKAVTLVNKLRQNGIS 358

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              D +  ++ +Q   A+       VI+G + +     ++K+  TG +E +S   +I   
Sbjct: 359 AEKDYLKRKLKAQLKDANRKKAIYTVILGEEELQTGNYQLKNMETGEQEAVSETTIIEKL 418

Query: 439 SHRFSNN 445
           ++     
Sbjct: 419 TNTKEEK 425


>gi|153808899|ref|ZP_01961567.1| hypothetical protein BACCAC_03200 [Bacteroides caccae ATCC 43185]
 gi|149128232|gb|EDM19451.1| hypothetical protein BACCAC_03200 [Bacteroides caccae ATCC 43185]
          Length = 513

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 126/395 (31%), Gaps = 57/395 (14%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD-SYGKEMLRLADRNDKAMIYGP 108
           L+ +  II +E       E+  P +     W E  +++  +  EM   AD + K  +   
Sbjct: 166 LEELRQIIIDE-------EIVCP-ISGTKNWTEVRQFNLMFSTEMGSTADGSMKIYLRPE 217

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   QI   FR+E+  R  + R REF   +   F   P 
Sbjct: 218 TAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFFVK-PG 276

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                + K     L+    LG              GD S+ +             +    
Sbjct: 277 TELDWFKKWKEIRLKWHKALGF-------------GDASYRYHDHDKLAHYANAATDIEF 323

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
             P                        +     +H+   FD     K         G   
Sbjct: 324 LMPF----------------------GFKEVEGIHSRTNFDLSQHEK-------FSGKSI 354

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
            +           +             S    A       +E+      +  P ++AP K
Sbjct: 355 KYFDPELNESYTPYVIETSIGVDRMFLSIMSAAY--CEEQLENGESRVVLKLPAALAPVK 412

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ +   D    +   +I   L        +D+    IG ++   D +G P  V V  
Sbjct: 413 LAVMPLVKKD-GLPEKAREIIDDLK-FHFHCQYDEKD-SIGKRYRRQDAIGTPYCVTVDH 469

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + D+ V +++R T  +E +++ E+ N  + R S
Sbjct: 470 QTLEDNCVTLRNRDTMQQERVAISELNNIIADRVS 504


>gi|134277363|ref|ZP_01764078.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|134251013|gb|EBA51092.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 305]
          Length = 446

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 115/426 (26%), Gaps = 29/426 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + +   FR E   R    R R+F
Sbjct: 76  FVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYLGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 TGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               ++     +     P+   +T    +  +     Q        S  H + L   L  
Sbjct: 193 QHVDKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPQLIDFLGDVSRAHFDGLQRLLKA 252

Query: 274 NKR------VSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           N           RG++     +F + T           G        Q+G     A    
Sbjct: 253 NNLPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWA 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW---- 381
             V       K            + +++        R+    +  RL   G DV      
Sbjct: 313 MGVERILELLKEEHLVPEQEGVDVYVVHQG---DAAREQAFIVAERLRDTGLDVILHCSA 369

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTG------IREDMSLEEV 434
           D  G    SQ   AD  G    VI G   V++  V +K  R TG      +++ + +E +
Sbjct: 370 DGAGASFKSQMKRADASGAAFAVIFGEDEVANGTVSVKPLRGTGAEGEKNVQQSVPVESL 429

Query: 435 INYASH 440
             +  +
Sbjct: 430 TEFLIN 435


>gi|53719148|ref|YP_108134.1| histidyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|126453409|ref|YP_001066491.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|167719270|ref|ZP_02402506.1| histidyl-tRNA synthetase [Burkholderia pseudomallei DM98]
 gi|167738266|ref|ZP_02411040.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 14]
 gi|167815456|ref|ZP_02447136.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 91]
 gi|167845407|ref|ZP_02470915.1| histidyl-tRNA synthetase [Burkholderia pseudomallei B7210]
 gi|167902398|ref|ZP_02489603.1| histidyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
 gi|242314906|ref|ZP_04813922.1| histidine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|254179552|ref|ZP_04886151.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|81690387|sp|Q63UT2|SYH_BURPS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166227951|sp|A3NVX0|SYH_BURP0 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|52209562|emb|CAH35515.1| histidyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|126227051|gb|ABN90591.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|184210092|gb|EDU07135.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|242138145|gb|EES24547.1| histidine--tRNA ligase [Burkholderia pseudomallei 1106b]
          Length = 446

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 115/426 (26%), Gaps = 29/426 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + +   FR E   R    R R+F
Sbjct: 76  FVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYLGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 TGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               ++     +     P+   +T    +  +     Q        S  H + L   L  
Sbjct: 193 QHVDKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPQLIDFLGDVSRAHFDGLQRLLKA 252

Query: 274 NKR------VSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           N           RG++     +F + T           G        Q+G     A    
Sbjct: 253 NNLPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWA 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW---- 381
             V       K            + +++        R+    +  RL   G DV      
Sbjct: 313 MGVERILELLKEEHLVPEQEGVDVYVVHQG---DAAREQAFIVAERLRDTGLDVILHCSA 369

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTG------IREDMSLEEV 434
           D  G    SQ   AD  G    VI G   V++  V +K  R TG      +++ + +E +
Sbjct: 370 DGAGASFKSQMKRADASGAAFAVIFGEDEVANGTVSVKPLRGTGAEGEKNVQQSVPVESL 429

Query: 435 INYASH 440
             +  +
Sbjct: 430 TEFLIN 435


>gi|302916831|ref|XP_003052226.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733165|gb|EEU46513.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 663

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 87/304 (28%), Gaps = 26/304 (8%)

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
              K   +   + + +              +          E +  AD     +      
Sbjct: 339 FMQKIGVDLSKMRFRQHMANEMAHYACDCWDCELFTTSGWIECVGCADRSAYDLSVHAKK 398

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI----- 282
              P+       + ++     +E     +        + +  +L    +     +     
Sbjct: 399 TGAPLVVRERREEPLVIEEWQIEIEKKKFGPLFKKDAKTVEAALNATSQEQREQLAKELS 458

Query: 283 EVGHI-----------FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           E G I              G K S+ +    +  + ++    +     G  R++ +++E 
Sbjct: 459 ETGSISIEVAGVGDGKAKIG-KESIAIEFRKRVENTREFVPNVIEPSFGIGRILYSLMEH 517

Query: 332 SHDGKGIIWPDSVAPFKISLINIKA---------HDQVCRDACEKIYARLSKVGCDVFWD 382
           S   +     D           +            +   +   +++  RL   G     D
Sbjct: 518 SFWTRASDGGDEARGVLSFPPTVAPTKVLLVPLSSNPQFKPLLKQLSQRLRTAGISSRVD 577

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           D    IG +++  D LG PL + +  + V D  V ++ R +  +     E++I+      
Sbjct: 578 DSSASIGKRYSRNDELGTPLGITIDFQTVQDGTVTLRDRDSTSQVRADQEKIIDAIRSLV 637

Query: 443 SNNR 446
              +
Sbjct: 638 EGEK 641



 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           G+Y + P G     NV    R+        +E+    L   ++   SG  D +   M + 
Sbjct: 40  GLYDYGPPGCSLQANVIDAWRKHFILEEDMLEVDCTVLTPHEVLKTSGHVDKFADWMCKD 99

Query: 97  ADRND 101
               +
Sbjct: 100 PKNGE 104


>gi|313633167|gb|EFS00051.1| histidyl-tRNA synthetase [Listeria seeligeri FSL N1-067]
          Length = 427

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 61/427 (14%), Positives = 120/427 (28%), Gaps = 26/427 (6%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            + A            E+  P  +  +L+        D   KE
Sbjct: 3   LPRGTRDILPEEVTKWHFLEAAFAAVCENYQYEEIRTPIFEHTELFERGVGDSTDIVSKE 62

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +   F  H      + P   Y  +  FR E        R
Sbjct: 63  MYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGAVSQPIKMYYNEPMFRYERPQGG---R 119

Query: 152 SREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL---- 206
            R+F            P       +     + RI  R     I    +            
Sbjct: 120 QRQFTQMGIEAIGSDDPAIDVEVISLAMEFFKRIGLRNIKLVINSLGDKESRLKHREALV 179

Query: 207 -SHEFIVLADTGETQVFCSKD---FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
              E  +     E QV   K+    +D     +N       S+   + + +  Y      
Sbjct: 180 SHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQTAPSILDYLNEESVAYFNQVQS 239

Query: 263 HNEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +   L  S  E      RG++      F   ++     + T     G+ H +     G  
Sbjct: 240 YLNALEISF-EIDPTMVRGLDYYNHTTFEIMSEEEGFGAKTTLCGGGRYHGLVKEFGGPD 298

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
              +   +               +   K   + +             +  +L K G    
Sbjct: 299 TPGIGFGIGVERILLALEKADVKIPAKKPLEVYVITAQPEAELKAVTLVNKLRKNGISAE 358

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D +  ++ +Q   A+       +I+G + +     ++K+  TG +E +  + +      
Sbjct: 359 KDYLKRKLKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEIVFEDTLETVLIE 418

Query: 441 RFSNNRP 447
           + +N + 
Sbjct: 419 KLTNTKE 425


>gi|293391766|ref|ZP_06636100.1| histidyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952300|gb|EFE02419.1| histidyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 425

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 63/426 (14%), Positives = 123/426 (28%), Gaps = 40/426 (9%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V   +R      G  E+ +P ++S  L+  + G   D   KEM    DR+
Sbjct: 15  LPTETPLWQWVENKVRSVLQAYGYAEIRMPIVESTPLFARAIGEVTDVVEKEMFTFNDRD 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+++   P            H   Y      +Y +   FR E   +    R R+F     
Sbjct: 75  DESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWY-MGPMFRYERPQKG---RYRQFHQVGV 130

Query: 161 YSFDLTPEGSKHSYNK----------MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
             F +                     +F       + +G            +    +H  
Sbjct: 131 EIFGIPNPEIDAELIALTARLWKDLGIFDHVTLQLNSIGSLEARKNYRQALVAFLQNHLD 190

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           I+  D+           +D          +D   L+  +++     +         L D+
Sbjct: 191 ILDEDSKRRLTTNPLRILDSKDQRVQQVLNDAPKLHDYLDEE----SREHFAQLCALLDN 246

Query: 271 LP---ENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           L    E  +   RG++     +F       G + ++     + G   +         G  
Sbjct: 247 LGIKYEINQKLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATAGVGFA 306

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCD 378
                  ++    +    +            I I    +    A   +  +L        
Sbjct: 307 MGLERLVLLVQEVNKHITLPS-------AVDIYIVYQGEGTTVAAFSLAEKLRSELPHLR 359

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINY 437
                 G     QF  AD  G  L +++G   V + +V +K       +  ++L ++  +
Sbjct: 360 TLLHCSGGNFKKQFKRADKSGAKLALVIGEDEVKNQQVVVKELLQHSEQVVVALSDITTH 419

Query: 438 ASHRFS 443
             + F 
Sbjct: 420 IQNTFK 425


>gi|327490405|gb|EGF22189.1| histidine--tRNA ligase [Streptococcus sanguinis SK1058]
          Length = 426

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 58/402 (14%), Positives = 116/402 (28%), Gaps = 25/402 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
           +   +     +M     + F  +G+ ++ +   S       +                  
Sbjct: 137 SNPATD---VEMIAMAAQFFKDIGITNVSLELNSLGNPESRAAYRQALIDYLTPLKASLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D   P +    +   S+   +++ ++ Y A      E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESSAYFAAVRSMLETLQIPYVI 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               V         IF F T+ +         A G+   +     G     V   +    
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLT--ICAGGRYDGLVAYFGGPETPGVGFGMGLER 311

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      +       + +            ++   L   G     D +  ++ +QF
Sbjct: 312 LLLVLDKQGVELPIETALDVYVAVLGPGANGRALELVQALRTQGFAAERDYLDRKLKAQF 371

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             AD+      + +G   V   +V +K+        +SL+++
Sbjct: 372 KSADIFKAKTLITLGESEVESGQVTVKNNHNREEITVSLDQI 413


>gi|158320739|ref|YP_001513246.1| histidyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
 gi|166980043|sp|A8MGM7|SYH_ALKOO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|158140938|gb|ABW19250.1| histidyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 421

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 53/404 (13%), Positives = 108/404 (26%), Gaps = 10/404 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  + +E   R G  E+  P  +  +L+        D   KEM    DR  +++   
Sbjct: 20  WHYVEGVFKEVAKRFGFEEIRTPVFEHTELFERGVGDTTDVVEKEMYTFLDRGGRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F  H       P   + I   FR E           +F ++   +   + 
Sbjct: 80  PEGTAPAARSFIEHKLYADTQPTKMFYITPVFRYERPQAGRFREHHQFGVEAFGASSASV 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +    +          +       +     +       +   F+  +   +    C   F
Sbjct: 140 DAEVINLAMSVYEAFGVKKLELRINSVGCPKCRAEYNKVLRAFL-SSRLDQLCGTCQNRF 198

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV------SARG 281
              PI   +   D   +  + V             H E+L   L  +           RG
Sbjct: 199 ERNPIRIIDCKSDSCQAQLTDVPLMMDHLCGECQDHFEELKKYLEASGLHYVIDPRIVRG 258

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           ++      F                G+   +     G     V   +             
Sbjct: 259 LDYYTKTAFEIITEEAGKKGTVCGGGRYDKLVEDCGGPSTPGVGFGMGIERAILALEDQG 318

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +   +   + I    +       K+   L + G     D +   + +QF  A+ +   
Sbjct: 319 IEIPKPEGLDVFIVTMGEKASYEGFKLLTALRRAGFSGDKDHLDRSVKAQFKYANKVNAS 378

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             +I+G   +     ++K+       ++ L++ I       S  
Sbjct: 379 YTIIIGENELEKGIAKLKNMANSEEIEIELKD-ITKLKEILSGR 421


>gi|157371843|ref|YP_001479832.1| histidyl-tRNA synthetase [Serratia proteamaculans 568]
 gi|166980049|sp|A8GHW4|SYH_SERP5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|157323607|gb|ABV42704.1| histidyl-tRNA synthetase [Serratia proteamaculans 568]
          Length = 424

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 61/421 (14%), Positives = 127/421 (30%), Gaps = 29/421 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +  I+++  +  G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPEETALWQRIEGILKQVLSGYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYV-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSY----NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
               A  F L              + + +     H     +     E+     D    F+
Sbjct: 126 HQLGAEVFGLQGPDIDAELILLSARWWKALGISEHVKLELNSIGSLEARANYRDALVAFL 185

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD-- 269
                   +  C +     P+   ++   ++ +L +   + +    A S  H E L +  
Sbjct: 186 EQHQEKLDED-CKRRMYSNPLRVLDSKNPEVQALLNDAPRLSEYLDADSKAHFEGLCELL 244

Query: 270 -----------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                       L        R +        G + ++     + G   +       + G
Sbjct: 245 AQAGIPYTINERLVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDGLVEQLGGRATPAVG 304

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                    ++          +  +       + +            E++     ++   
Sbjct: 305 FAMGLERLVLLVQ---AVNPEFKAAATIDVYVISSGAGTQSAAMQLAERVRDAAPQLKLM 361

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +   G     Q   AD  G  + +I+G   V+  +V +K   +G +E ++  EV    
Sbjct: 362 TNY--GGGNFKKQITRADKWGARVALILGENEVAAQQVVVKDLRSGEQETLAQSEVAVRL 419

Query: 439 S 439
           +
Sbjct: 420 A 420


>gi|327467316|gb|EGF12816.1| histidine--tRNA ligase [Streptococcus sanguinis SK330]
          Length = 426

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/402 (14%), Positives = 116/402 (28%), Gaps = 25/402 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
           +   +     +M     + F  +G+ ++ +   S       +                  
Sbjct: 137 SNPATD---VEMIAMAAQFFKDIGITNVSLELNSLGNPESRAAYRQALIDYLTPLKPSLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D   P +    +   S+   +++ ++ Y A      E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESSAYFAAVRSMLETLQIPYVI 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               V         IF F T+ +         A G+   +     G     V   +    
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLT--ICAGGRYDGLVAYFGGPETPGVGFGMGLER 311

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      +       + +            ++   L   G     D +  ++ +QF
Sbjct: 312 LLLVLDKQGVELPIETALDVYVAVLGAGANGRALELVQALRAQGFAAERDYLDRKLKAQF 371

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             AD+      + +G   +   +V +K+        +SL+++
Sbjct: 372 KSADIFRAKTLITLGESELESGQVTVKNNHNREEIIVSLDQI 413


>gi|325953928|ref|YP_004237588.1| glycyl-tRNA synthetase [Weeksella virosa DSM 16922]
 gi|323436546|gb|ADX67010.1| glycyl-tRNA synthetase [Weeksella virosa DSM 16922]
          Length = 511

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 83/233 (35%), Gaps = 15/233 (6%)

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           ++   + + +  +    +      +      +  A YA  +     +      E + + +
Sbjct: 277 ELDWYEKWKETRLKWHKSLGLGDDNYRFHDHEKLAHYANAATDIEFRFPFGFKELEGIHS 336

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV---------IE 330
           R            K+S      F     + +   +    +G  R+  AV         + 
Sbjct: 337 RTDFDLKAHE---KFSGKKLQYFDNETNESYVPYVVETSVGLDRLFLAVFSNSLREEELA 393

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                  +  P ++AP K +++ +   D    +  E+I  +L     +V +++    IG 
Sbjct: 394 DGTQRVVLALPAAIAPIKAAILPLVKKD-GLPELAEEIVRKLR-YDFNVMYEEKD-SIGK 450

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++   D +G P  + V    + D+ V ++HR T  ++ +++ ++        +
Sbjct: 451 RYRRMDAIGTPFCITVDHDSLKDNTVTLRHRDTMEQKRVAISDLPAIIDAEVN 503



 Score = 37.4 bits (85), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 10/103 (9%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMS 70
           ++ SH      G I Q S        +Y +   G +  +N+     +   +     + + 
Sbjct: 8   KVISHAKE--YGFIFQSSEIYDGLSAVYDYAQNGVELKNNLKQYWWKSMVQLHENIVGID 65

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
                    W  SG  D++   ++   D   +        E  
Sbjct: 66  SAIFMHPTTWKASGHVDAFNDPLIDNKDSKKRYRADVLIEEHC 108


>gi|296805896|ref|XP_002843772.1| glycyl-tRNA synthetase 1 [Arthroderma otae CBS 113480]
 gi|238845074|gb|EEQ34736.1| glycyl-tRNA synthetase 1 [Arthroderma otae CBS 113480]
          Length = 685

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 1/139 (0%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                      +  +G    ++  +E++ + + +  P SVAP K+ L+ + +H Q  R  
Sbjct: 532 EHVYWSRPSDAARVVGINSGLSISLEANINVQVLSLPPSVAPTKVLLVPLSSH-QSFRPI 590

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            + + ++L  +G     DD    IG ++A  D LG P  + V    V DS + ++ R T 
Sbjct: 591 IKNLSSQLRSLGISNRIDDSNASIGKRYARNDELGTPFGITVDFDTVKDSTITLRERDTT 650

Query: 425 IREDMSLEEVINYASHRFS 443
            +   + EE+I+       
Sbjct: 651 KQVRGTTEEIISTVKRLVD 669



 Score = 47.4 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           G++ + P G     N+  I R+        +E+    +   D++  SG  D +       
Sbjct: 47  GLFDYGPPGCALQANIVDIWRKHFVLEEDMLELDCTAITPEDVFKTSGHVDRFAD--WMC 104

Query: 97  ADRNDKAM 104
            D      
Sbjct: 105 KDPAKGEY 112


>gi|222055711|ref|YP_002538073.1| histidyl-tRNA synthetase [Geobacter sp. FRC-32]
 gi|221565000|gb|ACM20972.1| histidyl-tRNA synthetase [Geobacter sp. FRC-32]
          Length = 415

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 64/406 (15%), Positives = 112/406 (27%), Gaps = 21/406 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
             ++ A  R      G  E+ VP L+  +L+  S     D   KEM    D+ +  +   
Sbjct: 20  WQHIEAAARRIFGLYGFSEIRVPILEKTELFCRSIGDSTDIVEKEMYSFVDKGENKVTMR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  H     +     Y +   FR E   +    R R+F    A    +  
Sbjct: 80  PEGTASIMRAFIEHKLYVADPVAKLYYMGPMFRYERPQKG---RYRQFHQIGAEVTGIAD 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD--TGETQVFCSK 225
                    M       F  LGL    ++  S            VL D         C  
Sbjct: 137 PKVDAQVLTML---CHFFAELGLTEPHLQINSLGCPECRPKYRQVLKDFLKSRIGKLCDD 193

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-- 283
                                   E   AP       H+     +       S       
Sbjct: 194 CRRRIDTNPLRALDCKAAGCKEATEG--APSVLDYLCHDCNDHFAKTRCHLESVGTSYSI 251

Query: 284 -----VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                 G  +Y  T + L        +         G         +  +  +    +  
Sbjct: 252 NTRMVRGLDYYTRTTFELVTGLLGSQSAVAAGGRYDGLISDLGGPSLPGIGFAMGVERVA 311

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +        K     I A  +  ++   ++ + L + GC V  D  G+ + SQ   AD  
Sbjct: 312 LLLAEKDFRKRPDFFIAALGETAQEEAFRLMSGLQQKGCSVEMDFAGKSLKSQMRRADKF 371

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
                +I+G   +      +K+  +G + D+ L   ++      ++
Sbjct: 372 NAHFTLILGEDELVKGTAALKNMDSGTQTDVRLN--VDVLCKAVAS 415


>gi|91772920|ref|YP_565612.1| glycyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
 gi|91711935|gb|ABE51862.1| Glycyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
          Length = 581

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 136/415 (32%), Gaps = 79/415 (19%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R        LPF   QI   +R+E+ PR GV+R REF   +A  F
Sbjct: 157 YMRPETAQGMFINFQRLSRYYRDKLPFGATQIGKSYRNEISPRQGVIRLREFTQAEAEIF 216

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS---HEFIVLA------ 214
               E    ++ +     L ++     +   +   +     +     HEF+         
Sbjct: 217 THPKEKGHPNFERFAEVTLNLYSDEAQEKGAIEQMTVREAVENDIIAHEFLAYHIALTNH 276

Query: 215 ----------------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
                              +     + D  D  I ++   + +++ +    +     +A 
Sbjct: 277 FLQRVGIAADKLRFRQHQKDEMAHYAIDCWDAEILTDRFGWIEVVGIADRTDFDLKAHAK 336

Query: 259 TS----DVHNEKLFDSLPENKRV---------------------------------SARG 281
           TS    ++H E     + E   V                                   + 
Sbjct: 337 TSGTKLEIHIEYDEPKMVEQFVVKPDMGKLGPLFKGKAKAVADALRELSEDELSKDEIKV 396

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD------- 334
           I  G  F   ++       T K   G+     +     G  R++   +E + D       
Sbjct: 397 IVNGEKFTVPSEIISYAQETVK-VSGEKIVPHVIEPSYGIDRILYCTMEHAFDEEKVEVE 455

Query: 335 -------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                     + + + VAP +++++ +   D++  +  + I  +L + G  V +DD    
Sbjct: 456 GDEEEEERMVLRFRNEVAPVQVAILPLLTRDELI-EPAKAIAQKLRERGLLVAYDDSRA- 513

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           IG ++   D +G P  + +    + D+ V I+ R T  +   S+E + N      
Sbjct: 514 IGRRYRRNDEIGTPYSITIDYDTLEDNSVTIRDRDTMKQVRASVEGIENSIYDLV 568



 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           + G Y + PLG      +  I RE      G +E+  PT+   D++V SG    +   + 
Sbjct: 27  AAGFYDYGPLGCTLKRRIEQIWRELYVIHEGFMEIETPTVGIEDVFVASGHVGGFSDPLC 86

Query: 95  RLADRND 101
              +  +
Sbjct: 87  ECQECEE 93


>gi|325981898|ref|YP_004294300.1| histidyl-tRNA synthetase [Nitrosomonas sp. AL212]
 gi|325531417|gb|ADZ26138.1| histidyl-tRNA synthetase [Nitrosomonas sp. AL212]
          Length = 424

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 59/419 (14%), Positives = 107/419 (25%), Gaps = 22/419 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +    ++R      G   +  P ++  DL++ S G   D   KEM  
Sbjct: 10  GMNDILPEESYLWEYFEQMVRLWLTAYGYRNIRTPIVEQTDLFIRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                       P   Y     FR E   R    +  + 
Sbjct: 70  FIDHLNNDSLTLRPEGTASCVRAAIEHNLLYAGPQRLYYAGPMFRHERPQRGRYRQFHQV 129

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA- 214
            ++         +             L I       S     ES  +      ++     
Sbjct: 130 GVEALGYAGPDIDAELIVMCVRLWELLGISDLRLEISTLGNTESRALHRSRLLKYFERHR 189

Query: 215 -----DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT------SDVH 263
                D+           +D   P      ++   L   ++  +  +  +          
Sbjct: 190 DNLDEDSLRRLYVNPLRILDSKNPEMQQIIENAPKLIDDLDPESCGHFESLQRILRERGI 249

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           N  +   L        R +        G + ++     + G   +       + G     
Sbjct: 250 NYNINLRLVRGLDYYNRTVFEWVTDKLGAQGTVCAGGRYDGLVEQVGGKPTPACGFAMGV 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
                +   +  K              +      D+   D   K    L   G DV    
Sbjct: 310 ERLLSLMQEYGKKIQQPVP-------DVYIAYQGDEQVMDYAWKCAEFLRDEGFDVILHC 362

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHR 441
            G    SQ   AD  G    +I+G+      +V IK  R    +  + L EV    + +
Sbjct: 363 GGGSFKSQMKKADSSGAVYALIIGNDEFRAQQVTIKPLRDLIEQVSLKLSEVAEIINKK 421


>gi|238794829|ref|ZP_04638430.1| Histidyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
 gi|238725842|gb|EEQ17395.1| Histidyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
          Length = 444

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/420 (13%), Positives = 126/420 (30%), Gaps = 27/420 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        + +I+++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 30  GMNDYLPADTAIWQRIESILKQVLAGYGYSEIRMPIVEQTPLFKRAIGEVTDVVEKEMYT 89

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 90  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRYERPQKG---RYRQF 145

Query: 156 LMKDAYSFDLTPEGSKHS----YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
               A  F L              + + +     H     +     ++     +    F+
Sbjct: 146 HQLGAEVFGLQGPDIDAELILLTARWWRALGISEHVQLELNSIGSLDARADYREALVTFL 205

Query: 212 VLA------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHN 264
                    D            +D   P      +D   L+  +++ +   +A   ++ +
Sbjct: 206 EQHVEVLDEDCKRRMYSNPLRVLDSKNPDVQLLLNDAPKLSEYLDEESKQHFAGLCELLD 265

Query: 265 EKLFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +         + V         +F       G + ++     + G    +      +  +
Sbjct: 266 QASIPYTVNERLVRGLDYYNRTVFEWVTNSLGAQGTVCAGGRYDGL--VEQLGGRATPAV 323

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G    +  ++             +     +                E +   +  +    
Sbjct: 324 GFAMGLERLVLLVQAVNADFQVPATVDVYVISSGQDTQSAAML-LAENLRDAMPTLKLMT 382

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +   G  +  QF  AD  G  + +++G   V+  +V +K    G +E ++  +V    +
Sbjct: 383 NY--GGGNVKKQFTRADKWGARVALMLGESEVAAQQVVVKDLRNGEQETLAQADVAARLA 440


>gi|38347165|emb|CAE05155.2| OSJNBa0039C07.11 [Oryza sativa Japonica Group]
          Length = 673

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 98/360 (27%), Gaps = 24/360 (6%)

Query: 96  LADRNDKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D++          E  M     +   KS   L       +    +E     G    R 
Sbjct: 292 PEDKSHPKFRDVSDLEFFMFPREQQLTGKSAMKLNIGQAVSEGTVNNE---TLGYFIGRV 348

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           +L       D      +         Y        ++      E   I    +++    +
Sbjct: 349 YLFLTQLGIDKDRLRFRQHLPNEMAHYAADCWDAEIECSFGWIECVGIADRSAYDLRAHS 408

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D     +   + F +     +         L    +          +  +E    +L   
Sbjct: 409 DKSGVALEAHEKFAEPREVEKLVITPSKKELGLAFKGNQRMVLEALEAMSETE--ALNMK 466

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKG-----ADGKDHYVQMGSYGIGAMRVVAAVI 329
             + ++G     +   G   ++  S             +     +     G  R++  + 
Sbjct: 467 SALESKGEVEFKVCTLGKDVTIKKSMVSINMEKKKEHQRKFTPSVIEPSFGIGRIIYCLF 526

Query: 330 ESSHDGKG---IIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVF 380
           E     +         +V  F   +  IK         +      +KI   L+  G    
Sbjct: 527 EHCFYQRPGKAEDEQLNVFGFPPLVAPIKCTVFPLVKIEKFEVVAKKISKALTAAGISHI 586

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D  G  IG ++A  D +G PL + V +       V ++ R +  +  + ++EV +    
Sbjct: 587 IDMTGNTIGKRYARTDEIGVPLAITVDNTT----SVTVRDRDSKDQIRVEVDEVASVVKE 642



 Score = 53.6 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     NV A  R+      G +E+  P +    +   SG  D +   M++
Sbjct: 79  AGLYDYGPPGCAVKANVLAFWRQHFVLEEGMLEVDCPCVTPEVVLKASGHVDKFTDLMVK 138

Query: 96  LADRNDKAMIYGPTHEEVM 114
             ++           ++  
Sbjct: 139 D-EKTGTCYRADHLLKDFC 156


>gi|282891064|ref|ZP_06299569.1| hypothetical protein pah_c045o080 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499057|gb|EFB41371.1| hypothetical protein pah_c045o080 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 515

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 120/365 (32%), Gaps = 62/365 (16%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +   +  + D +  A +   T + +  +       S   +PF   QI   FR+E+ PR  
Sbjct: 202 FKTMIGAIEDPSAIAYLRPETAQGIFVNFRNVLDTSRVKMPFGIAQIGKAFRNEVTPRNF 261

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--KSIPMRAESGPIGGDL 206
             RSREF   +   F + P+ +   Y          +  +G+  +++ +RA++       
Sbjct: 262 TFRSREFEQMEIE-FFVPPKDAADWYQYWRKKRYEWWQSIGISSENLRLRAQTLEELAHY 320

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + E    +D      F   DF +    +  TD+D         +     Y          
Sbjct: 321 AKEGAGSSDIEYKFPFTDPDFGELEGIAHRTDYDLRQHAEHSGQGDRLKY---------- 370

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                                              +     + ++  +     GA R   
Sbjct: 371 -----------------------------------YDQEKNERYFPHVIEPSAGADRGAL 395

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKA------HDQVCRDACEKIYARLSKVG---C 377
           A++  ++          V  F   +  IKA            +   +++  L K      
Sbjct: 396 ALLCEAYHDDPNRPSGVVMKFHPRMAPIKAAIFPLVDKDGMPEIARQLFTDLRKKWPIQL 455

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           DV      + IG ++A  D +G P    V ++ + D  V +++R T  +E + L++V  +
Sbjct: 456 DV-----KQNIGKRYARMDEVGTPYCFTVDTQTLQDQTVTVRYRDTLQQERIGLDQVKQF 510

Query: 438 ASHRF 442
            +   
Sbjct: 511 LTDHI 515


>gi|255692612|ref|ZP_05416287.1| glycine--tRNA ligase [Bacteroides finegoldii DSM 17565]
 gi|260621671|gb|EEX44542.1| glycine--tRNA ligase [Bacteroides finegoldii DSM 17565]
          Length = 513

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 129/395 (32%), Gaps = 57/395 (14%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD-SYGKEMLRLADRNDKAMIYGP 108
           L+ +  II +E       E+  P +     W E  +++  +  EM   AD + K  +   
Sbjct: 166 LEELRQIIIDE-------EIVCP-ISGTKNWTEVRQFNLMFSTEMGSTADGSMKIYLRPE 217

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   QI   FR+E+  R  + R REF   +   F   P 
Sbjct: 218 TAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFFVK-PG 276

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                + K     L+    LG      R         L+H      D      F  K   
Sbjct: 277 TELDWFKKWKEIRLKWHKALGFGDASYRYHD---HDKLAHYANAATDIEFLMPFGFK--- 330

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                 E         L+   +             NE     + E      R        
Sbjct: 331 ----EVEGIHSRTNFDLSQHEKFSGKSIKYFDPELNESYTPYVIETSIGVDR-------- 378

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                +   MSA++                          +E+      +  P ++AP K
Sbjct: 379 ----MFLSIMSASYCEE----------------------QLENGESRVVLKLPAALAPVK 412

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ +   D    +   +I   L        +D+    IG ++   D +G P  V V  
Sbjct: 413 LAVMPLVKKD-GLPEKAREIIDNLK-FHFHCQYDEKD-SIGKRYRRQDAIGTPYCVTVDH 469

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + D+ V +++R T  +E +++ E+ N  + R S
Sbjct: 470 QTLEDNCVTLRNRDTMQQERVAISELNNIIADRVS 504


>gi|307729250|ref|YP_003906474.1| histidyl-tRNA synthetase [Burkholderia sp. CCGE1003]
 gi|307583785|gb|ADN57183.1| histidyl-tRNA synthetase [Burkholderia sp. CCGE1003]
          Length = 446

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 64/424 (15%), Positives = 114/424 (26%), Gaps = 25/424 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      D     ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWDFFETTVKSMLRSYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FTDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAQERAAHRVELIAYLE 192

Query: 216 TGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                +     +     P+   +T    +  +     +        S  H E L   L  
Sbjct: 193 KHMDVLDEDAKRRLYTNPLRVLDTKNPALQEVAQNAPKLIDFLGEESRAHFEGLQRILKA 252

Query: 274 NKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           N           RG++  ++  F       + A    A G  +   +   G  A      
Sbjct: 253 NNIPFTINPRLVRGLDYYNLTVFEWVTDK-LGAQGTVAAGGRYDPLIEQLGGKATAACGW 311

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW----DD 383
            +      + +     V   +   + +       R+    I  RL   G DV      D 
Sbjct: 312 AMGIERILELLKEEQLVPEDEGCDVYVVHQGDAAREQAFIIAERLRDTGLDVILHCSADG 371

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT------GIREDMSLEEVIN 436
                 SQ   AD  G    V++G   +++  V +K  R T        + ++  E++  
Sbjct: 372 QSASFKSQMKRADASGAAFAVVLGEDEIANGTVGVKPLRDTNANGGKNEQHNVPAEDLTE 431

Query: 437 YASH 440
           +  +
Sbjct: 432 FLIN 435


>gi|270156687|ref|ZP_06185344.1| histidyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|289164866|ref|YP_003455004.1| histidyl-tRNA synthetase [Legionella longbeachae NSW150]
 gi|269988712|gb|EEZ94966.1| histidyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|288858039|emb|CBJ11899.1| histidyl-tRNA synthetase [Legionella longbeachae NSW150]
          Length = 425

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 67/422 (15%), Positives = 125/422 (29%), Gaps = 22/422 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        +  +      R G  E+  P ++S  L+  + G   D   KEM  
Sbjct: 10  GMNDVLPDATPLWRTLEQVFIHVLTRYGYQEIRFPLVESTQLFKRTIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D N  ++   P            H   +       + +   FR E   +    R R+F
Sbjct: 70  FNDLNGDSITLRPEGTAGCVRACLEHGLLHNQ-QQKLWYMGPMFRHERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSK----HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                 +F ++    +        K +             +             +  E++
Sbjct: 126 NQLGVEAFGMSGAMIELELISICRKFWEQLGFDNLVQLQVNTLGELSERHHYKKVLVEYL 185

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           +  +    +    +     P+   ++   ++ SL +   +        S  H +   D L
Sbjct: 186 LDHENLLDED-SKRRLDRNPLRILDSKNPEMHSLLANAPKLIDVLGEKSRAHFKSFCDGL 244

Query: 272 P------ENKRVSARGIE-VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                  E   V  RG++  GH  +      L   AT       D  V+           
Sbjct: 245 DTLNISYEVNPVLVRGLDYYGHTVFEWVTDKLGSQATVCAGGRYDILVEQLGGNRTPAAG 304

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWD 382
            A  IE  +     +        K ++  I  +DQ       KI   +       +V  +
Sbjct: 305 FALGIERIYLLMETLNLLKQEEKKNTIYIIATNDQAVMR-GLKIAESIRNGYPKVEVLVN 363

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHR 441
             G    SQF  AD  G    +I+G   +   ++ IK+  +G  +  +    +       
Sbjct: 364 TAGGSFKSQFKKADKSGAHFALILGDDEMIQEQIGIKNLRSGTEQITVKQNMLHQVLKDY 423

Query: 442 FS 443
             
Sbjct: 424 LE 425


>gi|189190276|ref|XP_001931477.1| glycyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973083|gb|EDU40582.1| glycyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 657

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 57/145 (39%), Gaps = 6/145 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              +++   +     G  R+  A+ E  +  +      +V  F  ++   K      + +
Sbjct: 492 ETMREYTPNVIEPSFGIGRIFYALCEHVYWTREQDEARAVLSFPPAVAPTKVLIVPLSSN 551

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                   K+  +L ++G     D  G  IG ++A  D LG PL + +  + + D+   +
Sbjct: 552 PDFEPFVRKLKDKLRRLGISNRVDASGASIGKRYARNDELGTPLGITIDFQSIKDNTFTL 611

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +   SL+E+    ++   
Sbjct: 612 RDRDTTEQVRSSLDEIAKAIANIVK 636



 Score = 45.9 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G    DN+  I RE        +++    L + ++   SG  D +   M +
Sbjct: 39  AGLYDYGPPGSALTDNIVDIWREHFVLEEDMLKVDPTILTTHEVLKTSGHVDKFADWMSK 98

Query: 96  LADRND 101
             D  +
Sbjct: 99  DPDSGE 104


>gi|325698123|gb|EGD40004.1| histidine--tRNA ligase [Streptococcus sanguinis SK160]
          Length = 426

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 58/402 (14%), Positives = 115/402 (28%), Gaps = 25/402 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
           +   +     +M     + F  +G+ ++ +   S       +                  
Sbjct: 137 SNPATD---VEMIAMAAQFFKDIGITNVSLELNSLGNPESRAAYRQALIDYLTPLKPSLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D   P +    +   S+   +++ ++ Y A      E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESSTYFAAVRSMLETLQIPYVI 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               V         IF F T+ +         A G+   +     G     V   +    
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLT--ICAGGRYDGLVAYFGGPETPGVGFGMGLER 311

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      +       + +            ++   L   G     D +  ++ +QF
Sbjct: 312 LLLVLDKQGVELPIETALDVYVAVLGAGANGRALELVQALRAQGFAAERDYLDRKLKAQF 371

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             AD       + +G   V   +V +K+        +SL+++
Sbjct: 372 KSADNFKAKTLITLGESEVESGQVTVKNNYNREEITVSLDQI 413


>gi|322374023|ref|ZP_08048557.1| histidine--tRNA ligase [Streptococcus sp. C150]
 gi|321276989|gb|EFX54060.1| histidine--tRNA ligase [Streptococcus sp. C150]
          Length = 426

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/409 (13%), Positives = 109/409 (26%), Gaps = 21/409 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  + RE   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVENVARETFKKYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P   Y I   FR E        R REF       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYIGSMFRYERPQAG---RLREFHQLGVECFGS 136

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--------IGGDLSHEFIVLADT 216
             P     +    +  +  +  +     +     +          I         +  D+
Sbjct: 137 KNPATDVETIAMAYQLFNTLGIKDVTLHLNSLGNTESRQAYRQALIDYLTPMRESLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLPENK 275
                      +D     +    ++  S+   +++ +  +        E L    + +  
Sbjct: 197 QRRLDENPLRVLDSKEKEDKLAVENAPSILDYLDEESQAHFDEVRTMLESLNIPYVIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPM-SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            V         IF F T       +    G          G    G    +         
Sbjct: 257 MVRGLDYYNHTIFEFITTIDKSELTICAGGRYDSLVEYFGGPETAGFGFGLGLERLLLVL 316

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            K  I         + +  +            ++   +   G     D +G +I +QF  
Sbjct: 317 DKQGITLPVEEGLDVYIAVLG---SEANGKALELAQAIRHQGFKAERDYLGRKIKAQFKS 373

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           AD       + +G   +   +V +K+  T     +S EE+    +    
Sbjct: 374 ADAFKAKTVITLGESELESGQVSVKNNTTREEVTVSFEELTENFAAVLD 422


>gi|256391560|ref|YP_003113124.1| histidyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256357786|gb|ACU71283.1| histidyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 420

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 68/431 (15%), Positives = 131/431 (30%), Gaps = 36/431 (8%)

Query: 34  QHSKGIYSWLP------LGQKALDNVNAIIREEQ----NRTGAIEMSVPTLQSADLWVES 83
           Q++ G +  LP      LG          +RE         G   +  PT +S  L+   
Sbjct: 5   QNAPGTFDLLPPDSAAFLG----------VREAMTAPLRAAGYDYIETPTFESTALFKRG 54

Query: 84  --GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
                D   KEM     R    +   P     +            +LP   +     +R 
Sbjct: 55  VGESTDIVTKEMYSFTTRGGDDVTLRPEGTASVLRAALQANLIRGSLPVKLWYSGSFYRY 114

Query: 142 ELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES- 199
           E + R    R R F    A +     P             Y  +        +    +  
Sbjct: 115 EKQQRG---RYRHFSQVGAEALGAEDPALDAELLIIGDDIYRGLGLTEYSLLLNSLGDQK 171

Query: 200 -GPIGGDLSHEFIVLADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
             P+  +   EF+   D  E      ++   +   D     +       +  +++ E+  
Sbjct: 172 CRPVYREKLQEFLRGLDLDEETRKRAEINPLRVLDDKREAVQRQLTGVPLISDNLCEECR 231

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA-TFKGADGKDHYV 312
           A +     +        L + K V  RG++      F   +S    + T  GA G+   +
Sbjct: 232 AYHEEVRRLLTAAGVKFLDDPKLV--RGLDYYTRTTFEYVHSGITGSPTAIGAGGRYDGL 289

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
                G     V  A+               VA      +         R+   ++   L
Sbjct: 290 SEELGGPSLPSVGWALGVDRTVLALHAEGREVAAGDQLDVFAVPLGDQAREVLFELVTTL 349

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            + G    +    + I +    AD  G    +++G + ++++ ++IK   TG +E +S  
Sbjct: 350 RRSGVAADFGYGSKGIKAAMKAADRSGARYALVLGERDIAENIIQIKELATGEQESVSFT 409

Query: 433 EVINYASHRFS 443
           +++     +  
Sbjct: 410 DIVTTIQEKLK 420


>gi|187736261|ref|YP_001878373.1| glycyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426313|gb|ACD05592.1| glycyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
          Length = 525

 Score = 90.6 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 91/258 (35%), Gaps = 34/258 (13%)

Query: 215 DTGETQVFCSK----DFMDFPIPSENTDFDDIISLNSIV------EQWTAPYAATSDVHN 264
           +  E + FC        +D  +      +D++      +      +   A Y+  +    
Sbjct: 273 EQMEIEYFCRPEDGLRLVDEWLEHRLCFYDEVGVPREHIHILDVPDGERAFYSKKTYDLE 332

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
            +    + E + ++ R          G   S      F     +     +     G  R 
Sbjct: 333 YEFPFGIQELEGIAYRTDYDLSCHQKG---SGRPLEYFDEETREKFIPHVVEPSAGCDRT 389

Query: 325 VAAVIESSHDGKGI-------------IWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           + A+I  ++D + +              +   +AP K ++  +   +        +I   
Sbjct: 390 ILAIICEAYDEEELVDDKGKKDVRTVLRFVPRMAPIKAAIFPLLKKNGEQVRIAREIEKT 449

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD------SKVEIKHRLTGI 425
           L +    VF+D+ G  +G ++   D +G P  + V  + + +        V I+HR +  
Sbjct: 450 L-QPWMSVFYDETGA-VGRRYRRQDEVGTPFCITVDFETLGENDASLKGTVTIRHRDSMK 507

Query: 426 REDMSLEEVINYASHRFS 443
           +E +++E+++++   R  
Sbjct: 508 QERVAIEDLLHWLIARIR 525



 Score = 39.7 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 8/77 (10%)

Query: 28 RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREE--QNRTGAIEMSVPTLQSADL 79
          R G I Q +       G + + P+G +   N+      +  Q R   + M    L    +
Sbjct: 21 RRGFIFQSAEIYGGLNGCWDYGPMGVELKRNLKEYWWRKNVQEREDVVGMDGSILTHNSV 80

Query: 80 WVESGRYDSYGKEMLRL 96
           V SG    +   M   
Sbjct: 81 LVASGHVGGFSDPMCDC 97


>gi|167767122|ref|ZP_02439175.1| hypothetical protein CLOSS21_01640 [Clostridium sp. SS2/1]
 gi|167711097|gb|EDS21676.1| hypothetical protein CLOSS21_01640 [Clostridium sp. SS2/1]
 gi|291559549|emb|CBL38349.1| histidyl-tRNA synthetase [butyrate-producing bacterium SSC/2]
          Length = 414

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/401 (12%), Positives = 127/401 (31%), Gaps = 23/401 (5%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +  I ++        E+  P  +  +L+        D   KEM    D+  +++   P  
Sbjct: 23  LENIFKDLCASYNIHEIITPVFEHTELFQRGVGETTDVVQKEMYTFEDKGHRSISLKPEG 82

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLT 166
                  +  +  +    P   + I   FR E       R       EF+  ++   ++ 
Sbjct: 83  TAGAIRAYLQNGLANEPQPIKMFYITPAFRYEKPQSGRLRQHHQFGVEFVGAESPLAEVE 142

Query: 167 PEGSKHSYNKMF--VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
                 ++ K           + +G ++         +     HE  +     E      
Sbjct: 143 LITLVSTFIKKIGLKDAKLHINSIGCENCRKEYNKALLAYLKEHEEHLCPTCRERMEKNP 202

Query: 225 KDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
              +D  +P       D   +++ + ++  A +     + +        + + V      
Sbjct: 203 LRVIDCKVPECKEIVKDAPRTIDYLDDECKAHFEELKSLLDALNIPYEVDTEIVRGLDYY 262

Query: 284 VGHIFYFGTK--YSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
              +F F  +  ++L     +            +    +G+G  R++  + E   D    
Sbjct: 263 TKTVFEFVNEDGFTLCGGGRYDNLVHEIDGKVSMPSVGFGMGVERILYFLEEEKVD---- 318

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +   +   + +    Q  +    +I   L   G  V  D +G  + +Q   A+ L
Sbjct: 319 -----LPCTRDIDLYVGILGQEAKAKAYQIVVDLRHQGFVVETDYLGRSVKAQMKYANKL 373

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
                +I+G   ++ ++  +K+  T     +SL+++ +   
Sbjct: 374 NAKNTIIIGDDELAKNEGNVKNMETREVTTISLDKIADCLK 414


>gi|322388551|ref|ZP_08062153.1| histidine--tRNA ligase [Streptococcus infantis ATCC 700779]
 gi|321140669|gb|EFX36172.1| histidine--tRNA ligase [Streptococcus infantis ATCC 700779]
          Length = 425

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 62/409 (15%), Positives = 118/409 (28%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKAIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKDSLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+   ++    A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDYLDAESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +       + I    +       ++   L + G     D +  ++ +QF  A
Sbjct: 315 VLEKQGVVLPIENALDVYIAVLGEEVNLKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V++K+  T    ++ LE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVKVKNNQTREEVEVPLETISKNFSEVFEK 423


>gi|315303276|ref|ZP_07873915.1| histidyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
 gi|313628354|gb|EFR96848.1| histidyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
          Length = 427

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 56/418 (13%), Positives = 111/418 (26%), Gaps = 16/418 (3%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        +              E+  P  +  +L+        D   KEM    D+ 
Sbjct: 11  LPNEVTKWHFLETAFASVCENFQYEEIRTPIFEHTELFERGVGDSTDIVSKEMYTFQDKG 70

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
            +++   P     +   F  H      + P   Y  +  FR E        R R+F    
Sbjct: 71  GRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKLYYNEPMFRYERPQGG---RQRQFTQMG 127

Query: 160 AY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF-IVLADTG 217
                   P       +     + RI  R     I    +                    
Sbjct: 128 IEAIGSDDPSIDVEVISLAMAFFTRIGLRDIKLVINSLGDKESRLRHREALVSHFEPHID 187

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP----- 272
           E    C       P+   +   D    L        A     S  + + +   L      
Sbjct: 188 EFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILAYLNEKSIAYFDNVQTYLNALEIP 247

Query: 273 -ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
            E      RG++      F   ++     + T     G+ H +     G     +   + 
Sbjct: 248 FEIDPTMVRGLDYYNHTTFEIMSEEEGFGAKTTLCGGGRYHGLVKEFGGPDTPGIGFGIG 307

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                         +   K   + + A           +  +L +       D +  ++ 
Sbjct: 308 VERILLALEKAKVLIPVKKPLEVYVIAAQPEAELKAVTLVNKLRENRISAEKDYLKRKLK 367

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           +Q   A+       +I+G + +   K ++K+  TG +E +  + +I     +   ++ 
Sbjct: 368 AQLKDANRKNAVYTIILGEEELETGKYQLKNMETGEQESIFEDSLIMVLKEKLIESKE 425


>gi|167752473|ref|ZP_02424600.1| hypothetical protein ALIPUT_00724 [Alistipes putredinis DSM 17216]
 gi|167659542|gb|EDS03672.1| hypothetical protein ALIPUT_00724 [Alistipes putredinis DSM 17216]
          Length = 518

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 87/244 (35%), Gaps = 16/244 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       GE   +   ++ D  +           +         A YA  
Sbjct: 263 FRMREFEQMEMQFFVRPGEEMRW-WAEWRDTRMKWHRALGFGADNYRFHDHDKLAHYANA 321

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +            E + + +R            K+S      F    G+ +   +    I
Sbjct: 322 ATDIEYNFPFGFKEVEGIHSRTDFDLSNHQ---KFSGKKIQYFDSETGESYVPYVVETSI 378

Query: 320 GAMRVV---------AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R+             +E+  +   +  P ++AP K++++ +   D    +  ++I  
Sbjct: 379 GVDRMFLQVMSAAYTEEKLENGEERVVLRIPAALAPTKVAVLPLVKKD-GMPEVAQRIVD 437

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L K   +V +D+    +G ++   D +G PL V V  + + D+ V ++HR T  +E ++
Sbjct: 438 -LLKYDFNVVYDEKD-SVGKRYRRQDAIGTPLCVTVDGQTLEDNTVTVRHRDTMQQERVA 495

Query: 431 LEEV 434
           ++ +
Sbjct: 496 IDAL 499


>gi|149370984|ref|ZP_01890579.1| glycyl-tRNA synthetase [unidentified eubacterium SCB49]
 gi|149355770|gb|EDM44328.1| glycyl-tRNA synthetase [unidentified eubacterium SCB49]
          Length = 513

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 89/253 (35%), Gaps = 16/253 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       GE   + +  + ++ +    +      +      +  A YA  
Sbjct: 260 FRMREFEQMEMQFFVRPGEEMKWYN-HWKEYRLNWHLSLGMGKENYRFHDHEKLAHYANA 318

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +            E + + +R            ++S      +    G+++   +    I
Sbjct: 319 AADIEFNFPFGFKELEGIHSRTDFDLKAHE---EHSGKKLKFYDPEIGENYTPYVVETSI 375

Query: 320 GAMRVVAAV---------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R+  AV         +E       +  P  +AP K ++  +   D    +  ++I  
Sbjct: 376 GLDRMFLAVFSNSLMDEKLEDGSSRTVLKLPAVLAPVKAAVFPLVKKD-GLPELAKEIIE 434

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L +   +VF+D+    +G ++   D  G P  + V  + + D  V I+HR T  +E +S
Sbjct: 435 DL-QWDHNVFYDEKDA-VGKRYRRQDAAGTPFCITVDHQSLEDKTVTIRHRDTMEQERVS 492

Query: 431 LEEVINYASHRFS 443
           + ++    ++  S
Sbjct: 493 IADLNAVITNAVS 505


>gi|77918646|ref|YP_356461.1| histidyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
 gi|123743059|sp|Q3A5R6|SYH_PELCD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|77544729|gb|ABA88291.1| histidyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
          Length = 419

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 61/423 (14%), Positives = 124/423 (29%), Gaps = 26/423 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP   +    +           G  E+ VP ++  +L+  S     D   KEM  
Sbjct: 8   GMNDILPSDVETWQFLEREAHRIFKLYGFAEIRVPVVEKTELFCRSIGETTDIVEKEMYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR+  ++   P     +   F  H     +     Y +   FR E   +    R R+F
Sbjct: 68  FDDRSSNSLTLRPEGTAPVMRSFIEHKLHALDPVSKLYYMGPMFRYERPQKG---RYRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV--- 212
               A +  +           M   Y   F  +G+ ++ +   S                
Sbjct: 125 HQIGAEAIGVDDPMMDAQVLAMLCHY---FDAVGIDNVELHVNSLGCQECRPQYRQALTG 181

Query: 213 ---------LADTGETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYAATSDV 262
                     AD            +D  +P+      D  S L+ +       +A     
Sbjct: 182 YLESRLDKLCADCQRRYQTNPLRVLDCKVPACQEATKDAPSVLDLLCSGCNDHFAQVRQH 241

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
             E   D     + V          F   T      +A   G        ++G   +  +
Sbjct: 242 LQELQIDYTINARMVRGLDYYTKTTFEMVTNQLGSQNAVAAGGRYDGLIKELGGPALPGI 301

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                V     +   ++  +         + + A  +        +  RL ++       
Sbjct: 302 GFAMGV-----ERLVLMKGEQQVQPPRPDVFLAALGEAAGQKAFALMYRLQRLDLRAEMA 356

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             G+ + +Q   A  L     +++G + ++  + +++    G +E ++LE +      + 
Sbjct: 357 FTGKSLKAQMRRAGKLNARYVLMLGEEELASGQAQLRDMDNGSQEPIALEGIEQALLEKT 416

Query: 443 SNN 445
             N
Sbjct: 417 RGN 419


>gi|195129603|ref|XP_002009245.1| GI13931 [Drosophila mojavensis]
 gi|193920854|gb|EDW19721.1| GI13931 [Drosophila mojavensis]
          Length = 679

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 86/305 (28%), Gaps = 22/305 (7%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
              Y   +             + + +              ++  +      E +  AD  
Sbjct: 352 LGYYMARIQQFLHAIGIKPECLRFRQHMGNEMAHYACDCWDAEILTSYGWVECVGCADRS 411

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
              +          + +E           S +         T     + + D+L +    
Sbjct: 412 AYDLGQHTAATGVRLVAEKRLAAPKTVEVSEIVPNKQALGKTFKKEAKAITDALAKLSLD 471

Query: 278 SARGIE--------------VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             +  E               G     GT+      AT K    ++    +     G  R
Sbjct: 472 DIKKAETQLAAGEQYTLTLPDGATHELGTESIAVKHAT-KTVHVEEFIPSVVEPSFGIGR 530

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGC 377
           V+ A++E S   +              +   K      +++   +   +++ + L+K   
Sbjct: 531 VMYALLEHSFQCREGDEQRCYFTLPPLVAPYKCSILPLSNNAEFQPYTQQLSSALTKAEL 590

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVIN 436
               DD    IG ++A  D +  P  + V    + +   V ++ R T  +  + L+ V++
Sbjct: 591 SHKVDDSSGSIGRRYARTDEIAIPYGITVDFDTLKEPHTVTLRDRNTMKQVRIGLDTVVS 650

Query: 437 YASHR 441
                
Sbjct: 651 VVKDL 655



 Score = 41.6 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+ A+ R+  +     +E+    L   
Sbjct: 73  LLKRRFFYDQSFAIYGGITGQYDFGPMGCALKSNILALWRQFFSLEEQMLEVDCSILTPE 132

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  + +   M++     + 
Sbjct: 133 PVLKASGHVERFADLMVKDVKTGEC 157


>gi|167823868|ref|ZP_02455339.1| histidyl-tRNA synthetase [Burkholderia pseudomallei 9]
 gi|226197114|ref|ZP_03792691.1| histidine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|254198372|ref|ZP_04904794.1| histidyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|169655113|gb|EDS87806.1| histidyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|225930493|gb|EEH26503.1| histidine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
          Length = 446

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 115/426 (26%), Gaps = 29/426 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + +   FR E   R    R R+F
Sbjct: 76  FVDALNGESLTLRPENTAAVVRAAIEHNMLYDGPKRLWYLGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 TGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               ++     +     P+   +T    +  +     Q        S  H + L   L  
Sbjct: 193 QHVDKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPQLIDFLGDVSRAHFDGLQRLLKA 252

Query: 274 NKR------VSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           N           RG++     +F + T           G        Q+G     A    
Sbjct: 253 NNLPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWA 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW---- 381
             V       K            + +++        R+    +  RL   G DV      
Sbjct: 313 MGVERILELLKEEHLVPEQEGVDVYVVHQG---DAAREQAFIVAERLRDTGLDVILHCSA 369

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTG------IREDMSLEEV 434
           D  G    SQ   AD  G    VI G   V++  V +K  R TG      +++ + +E +
Sbjct: 370 DGAGASFKSQMKRADASGAAFAVIFGEDEVANGTVSVKPLRGTGAEGEKNVQQSVPVESL 429

Query: 435 INYASH 440
             +  +
Sbjct: 430 TEFLIN 435


>gi|70945484|ref|XP_742556.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521607|emb|CAH81770.1| hypothetical protein PC000808.04.0 [Plasmodium chabaudi chabaudi]
          Length = 287

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 9/135 (6%)

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---------HDQ 359
           +    +     G  R++  ++E S   +          +      I           +++
Sbjct: 122 NFIPNVIEPSFGIGRIIFCILEHSFRIRQFTDDKEERHYLSLPYVISPIKCSVLSISNNK 181

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L++       D+    IG ++A  D +G P  V +  + + D  V ++
Sbjct: 182 EFYPYIKQIQTILNENNISCKLDNSSVSIGKKYARTDEIGIPFAVTIDFQTLKDKTVTLR 241

Query: 420 HRLTGIREDMSLEEV 434
            R + ++  +S  EV
Sbjct: 242 DRDSMLQIRVSTSEV 256


>gi|332797142|ref|YP_004458642.1| threonyl-tRNA synthetase editing domain-containing protein
           [Acidianus hospitalis W1]
 gi|332694877|gb|AEE94344.1| threonyl-tRNA synthetase editing domain protein [Acidianus
           hospitalis W1]
          Length = 385

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 55/150 (36%), Gaps = 7/150 (4%)

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           K +          +       +   ++++         P  ++P  + L+ +K       
Sbjct: 235 KNSLKIWESKDGKTTIWVGNLIYYILLQAKSMSTTPYLPLWISPIHVRLLPVKKD---FL 291

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  E+   +L   G  V  D+  + +G++   + +   P   IVG + +  S + ++ R 
Sbjct: 292 EKTEEFANQLLSKGVRVEIDNKDDGLGNKIRRSGMDWIPYVAIVGEREIKTSTLTVRIRK 351

Query: 423 TGIREDMSLEEVINYASHR----FSNNRPV 448
              ++ ++++E+              N PV
Sbjct: 352 KDEQKSLTVDELYALIKDEDPLMLRQNTPV 381


>gi|322711570|gb|EFZ03143.1| prolyl-tRNA synthetase [Metarhizium anisopliae ARSEF 23]
          Length = 578

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 47/224 (20%)

Query: 269 DSLPENK---RVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-DHYVQMGSYGIGAMRV 324
           DS P  +       R +E+GH FY G++YS P   +    + K    V+MG YGIG  R+
Sbjct: 241 DSCPRCEAGSLRIHRALELGHTFYLGSRYSKPFELSVTLPNSKAPVPVEMGCYGIGVSRI 300

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV-----GCDV 379
             AV E   D +G+ WP ++APF+I +I     +    +     + +L+       G D 
Sbjct: 301 FGAVAEHKADERGLNWPRAIAPFEIVVIPTSGVNSQTLEF----HDKLTSWSSTGPGFDA 356

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS-------KVEIK------------- 419
             DD  E  G +   AD+ G+P+ +++G  +            +  +             
Sbjct: 357 VLDDRKETFGWKMQDADMTGYPVTIVLGKAWRERGKLQNLLSTITYRGATPTANCDNLAS 416

Query: 420 -----HRLT-----GIREDMSLEEV----INYASHRFSNNRPVL 449
                 R++     G RE ++L+ +    +     +       L
Sbjct: 417 TTSLEQRISAANMAGERETINLDTLEPQQLAQVKKQLDEELEHL 460


>gi|212703760|ref|ZP_03311888.1| hypothetical protein DESPIG_01808 [Desulfovibrio piger ATCC 29098]
 gi|212672728|gb|EEB33211.1| hypothetical protein DESPIG_01808 [Desulfovibrio piger ATCC 29098]
          Length = 423

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 111/407 (27%), Gaps = 24/407 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G     P        +    RE   R G +E+  P L+  DL+  S     D   KEM  
Sbjct: 10  GFADMYPPQSSLFTRMENTAREIFGRYGFVELRTPVLEYTDLFKRSIGEETDVVQKEMFT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  + M   P     +   +    +  R      +     FR E   +    R R+F
Sbjct: 70  FPDRKGRMMTMRPEATAGVMRAYVEDARYSRESVSRLFTTGPMFRYERPQKG---RMRQF 126

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +          +      M   +L     LGLK + ++  S             L D
Sbjct: 127 HQINCECLGSHSPYADADLIIMLTRFL---TALGLKDLTLKLNSLGCAHCRPLFKQALVD 183

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--DIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
               Q  C +   D     E       D            AP     +    K  FD++ 
Sbjct: 184 YLHRQDCCDQLCEDCTRRMETNPLRVLDCKQEKCRCVTDEAPRLLDYNCPECKEHFDTVL 243

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFK-------GADGKDHYVQMGSYGIGAMRVV 325
                +    E+ H    G  Y    +            A             +G   V 
Sbjct: 244 RLLDAAGVKYEIDHRLVRGLDYYCRTTFEVVSGSIGAQAAVAGGGRYDGLVKSVGGPDVP 303

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
                   +   ++  D  AP         A D   RD    +  RL  +G     +   
Sbjct: 304 GVGFACGMERLALMLGDEEAPRPDFYAV--AMDAQSRDLSFGLVQRLRGLGLKGEMNFSD 361

Query: 386 EQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
              G +     A         I+G    +   V +K   +G ++ +S
Sbjct: 362 --AGFKGLMRQAGKSNARFCCIMGPDEAAAGAVVVKDMDSGEQQTLS 406


>gi|116309463|emb|CAH66534.1| H0209H04.1 [Oryza sativa Indica Group]
          Length = 679

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 99/360 (27%), Gaps = 24/360 (6%)

Query: 96  LADRNDKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D++          E +M     +   KS   L       +    +E     G    R 
Sbjct: 298 PEDKSHPKFRDVSDLEFLMFPREQQLTGKSAMKLNIGQAVSEGTVNNE---TLGYFIGRV 354

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           +L       D      +         Y        ++      E   I    +++    +
Sbjct: 355 YLFLTQLGIDKDRLRFRQHLPNEMAHYAADCWDAEIECSFGWIECVGIADRSAYDLRAHS 414

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D     +   + F +     +         L    +          +  +E    +L   
Sbjct: 415 DKSGVALEAHEKFAEPREVEKLVITPSKKELGLAFKGNQRMVLEALEAMSETE--ALNMK 472

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKG-----ADGKDHYVQMGSYGIGAMRVVAAVI 329
             + ++G     +   G   ++  S             +     +     G  R++  + 
Sbjct: 473 SALESKGEVEFKVCTLGKDVTIKKSMVSINMEKKKEHQRKFTPSVIEPSFGIGRIIYCLF 532

Query: 330 ESSHDGKG---IIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVF 380
           E     +         +V  F   +  IK         +      +KI   L+  G    
Sbjct: 533 EHCFYQRPGKAEDEQLNVFGFPPLVAPIKCTVFPLVKIEKFEVVAKKISKALTAAGISHI 592

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D  G  IG ++A  D +G PL + V +       V ++ R +  +  + ++EV +    
Sbjct: 593 IDMTGNTIGKRYARTDEIGVPLAITVDNTT----SVTVRDRDSKDQIRVEVDEVASVVKE 648



 Score = 53.6 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     NV A  R+      G +E+  P +    +   SG  D +   M++
Sbjct: 85  AGLYDYGPPGCAVKANVLAFWRQHFVLEEGMLEVDCPCVTPEVVLKASGHVDKFTDLMVK 144

Query: 96  LADRNDKAMIYGPTHEEVM 114
             ++           ++  
Sbjct: 145 D-EKTGTCYRADHLLKDFC 162


>gi|327403982|ref|YP_004344820.1| glycyl-tRNA synthetase [Fluviicola taffensis DSM 16823]
 gi|327319490|gb|AEA43982.1| glycyl-tRNA synthetase [Fluviicola taffensis DSM 16823]
          Length = 512

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 86/255 (33%), Gaps = 20/255 (7%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       G+   + +          +     D         +  A YA  
Sbjct: 260 FRMREFEQMEMQFFVRPGDEMKWYNHWKAARLAWHKALGLGDKYYREHDHIKL-AHYANA 318

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSY 317
           +            E + + +R       F      ++S      F     +++   +   
Sbjct: 319 ASDIEFDFPMGFKELEGIHSR-----TDFDLKQHEQFSGKKLQYFDPELNQNYVPYVVET 373

Query: 318 GIGAMRVVAAV---------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            +G  R+  AV         +E   +   +  P  +AP+K++++ +   D    +   +I
Sbjct: 374 SVGLDRMFLAVMSASFKNEKLEDGSERAVLSLPAQLAPYKVAIMPLTKKD-GLPEKATEI 432

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L     +  +D+     G ++   D +G P  V+V  + + D+ V I+ R T ++E 
Sbjct: 433 LNDLR-FDFNCQYDEKD-SPGKRYRRQDAIGTPYCVMVDHQTLEDNTVTIRDRDTMLQER 490

Query: 429 MSLEEVINYASHRFS 443
           +++ E+      + S
Sbjct: 491 VAISELRAKIDEKVS 505


>gi|331697361|ref|YP_004333600.1| Histidyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
 gi|326952050|gb|AEA25747.1| Histidyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
          Length = 438

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 128/415 (30%), Gaps = 17/415 (4%)

Query: 38  GIYSWLPL-GQ-KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEM 93
           GI  +LP  G  +  D + A      +R G   + +P  +   L+        D   KEM
Sbjct: 29  GIPEYLPADGFVRVRDALVA----AADRAGYGHIELPVFEDTGLYARGVGESTDVVSKEM 84

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
              ADR ++++   P     +      H      LP         FR E RP+ G  R  
Sbjct: 85  YSFADRGERSVTLRPEGTAGVVRAVIEHGLDRGGLPVKLRYAGPFFRYE-RPQAGRYRQL 143

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFI 211
           +  +         P             +  +        +     A+  P   +   EF+
Sbjct: 144 Q-QVGVEAIGVDDPALDAEVIAVADEGFRSLGLTGYRLELTSLGDADCRPPYRERLQEFL 202

Query: 212 VLADTGE----TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                 E             +D   P       D   L   + + +A + A    H + L
Sbjct: 203 AGLPLDEATRHRAAINPLRVLDDKRPEVRALLADAPLLVDHLSEASAAHHAAVKRHLDDL 262

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             +  EN R+  RG++      F   +    + +  G  G+   +     G     V   
Sbjct: 263 GVAYVENPRM-VRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMEVLGGQPLSGVGFG 321

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +              ++       +         RD    + A+L   G  V     G  
Sbjct: 322 IGVDRTLLACRAEGVAIDDAPRVDVFCVPLGDAARDRLVVVAAKLRAAGVRVDIAYGGRG 381

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +      AD  G    +++G + +    V +K   +G ++ ++L+ V+   + R 
Sbjct: 382 LKGSMKAADRSGARFALVLGERDIEAGTVGVKDLGSGDQDAVALDAVVETVAGRI 436


>gi|319779674|ref|YP_004130587.1| Histidyl-tRNA synthetase [Taylorella equigenitalis MCE9]
 gi|317109698|gb|ADU92444.1| Histidyl-tRNA synthetase [Taylorella equigenitalis MCE9]
          Length = 444

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 61/423 (14%), Positives = 119/423 (28%), Gaps = 33/423 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYG 107
              +  ++       G   +  P L+   L+    G   D   KEM   +   DKA +  
Sbjct: 26  WLILEDMLHSLMKSYGYKNIRTPVLEQTRLFARGIGEVTDIVEKEMYTFSMSQDKADMLT 85

Query: 108 PTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
              E     +  +   S   +     Y +   FR E   +    R R+F      +   +
Sbjct: 86  MRPEFTAGVVRAAIEHSITFDRAQRLYTMGPVFRHERPQKG---RYRQFHQLSVEAMGFS 142

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVF-- 222
                       +   R++   GL+ I +   S   P       E ++        V   
Sbjct: 143 GPDVDAE---QIIMLARLWGTFGLEDIHLEINSLGQPNERLAHREALIKHLEANIDVLDD 199

Query: 223 -CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA-- 279
              +     P+   +T   D+ S+ +   +        S  H ++L   L E        
Sbjct: 200 DAKRRMYSNPLRVLDTKNPDMQSMANEAPKLFDYLGEESKAHFDELKIRLDEAGIKYRIN 259

Query: 280 ----RGIEVG--HIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               RG++     +F       G + ++     + G             G          
Sbjct: 260 PRLVRGLDYYNLTVFEWVTGSLGAQATVCGGGRYDGLFELLGGKPTPCVGFAIGLERLIS 319

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +  S      I        + + +     +      C K+       G DV      +  
Sbjct: 320 LIISDSKNAEIKSKFTDIGQETQVYFIHQNSEAARKCSKLAELCRNSGIDVIVHAGSQNF 379

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL------TGIREDMSLEEVINYASHRF 442
            +QF  AD  G    +I+G   + +  V +K         +  +  +   +V+       
Sbjct: 380 KNQFKRADFSGANYAIIIGESELQNDTVSLKQLRPNPDGSSIEQITIPSSDVVVNLLKLI 439

Query: 443 SNN 445
           +  
Sbjct: 440 NKK 442


>gi|145589471|ref|YP_001156068.1| histidyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047877|gb|ABP34504.1| histidyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 442

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 61/411 (14%), Positives = 118/411 (28%), Gaps = 14/411 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP       +++ ++R+     G   +  P +++  ++    G   D   KEM  
Sbjct: 21  GMNDLLPADAAHWAHLDHVLRDLTRAYGYEFLRTPIVEATAVFQRGIGEVTDIVEKEMYS 80

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +   +                       P   +     FR E   R    +  +F
Sbjct: 81  FEDRLNGEQLTLRPEGTAAVVRSVIENNLLYEGPKRLWYTGPMFRHERPQRGRYRQFHQF 140

Query: 156 LMKDAYSFDLTPEGSKH------SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            ++         +                       + LG  +      +  I     H+
Sbjct: 141 GIEALGFAGPDIDAEIILMGQRLWDELGLKGVRLEINSLGQANERAEHRAALIKYFEKHQ 200

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
             +  D+    +      +D   P   T  D    L   + + +  +        +    
Sbjct: 201 SQLDEDSRRRLLTNPLRILDSKNPEMQTLIDGAPQLLDFLGEESLKHFNAVQALLKANNI 260

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
               N R+  RG++  ++  F        +       G+   +     G  A     A+ 
Sbjct: 261 PCKINPRL-VRGLDYYNLTVFEWVTEELGAQGTIAGGGRYDPLIERMGGKAAPACGWAMG 319

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW----DDMG 385
                    +            I +         A   I  RL   G D       D   
Sbjct: 320 MERVLELMKVSGSLPEAQAQCDIFVLHQGGETLTAAMIIAERLRSAGIDTILFCPPDGQS 379

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVI 435
               SQ   AD  G    VI+G   ++ ++ ++K  R TG ++ + L+EV+
Sbjct: 380 ASFKSQMKKADASGAAFAVIIGPDELAKNEAQLKDLRGTGEQKSVPLDEVL 430


>gi|329121508|ref|ZP_08250132.1| histidine--tRNA ligase [Dialister micraerophilus DSM 19965]
 gi|327469423|gb|EGF14893.1| histidine--tRNA ligase [Dialister micraerophilus DSM 19965]
          Length = 418

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 62/412 (15%), Positives = 115/412 (27%), Gaps = 29/412 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   IR+  +     E+  PT ++ +L++       D   KEM    DR  +++   
Sbjct: 18  WQYLEQKIRQICSLYNFEEIRTPTFEATELFLRGIGDTTDVVTKEMYTFNDRGGRSITLR 77

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P +   +   +  +     N     + I   FR +        R REF            
Sbjct: 78  PENTAAVVRSYLENKMYVDNTTHKLFYIGSMFRYDRPQAG---RYREFHQFGLEVLGSQD 134

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLA---DTGETQVF 222
                         ++ F  LGLK + +   S        + HE ++        E    
Sbjct: 135 PYVDAEV---IDLAVQFFKDLGLKELELHINSVGHVECRKVFHEKLIAFLEPKKDELCED 191

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--- 279
           C+      P+   +        +                   EKL   L E         
Sbjct: 192 CNTRLYKNPLRVLDCKNTTCKRIIEGAPNIVDCLCDDCSEKFEKLKTYLDELGIEYIVDP 251

Query: 280 ---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F   Y    + +     G+   +     GI    +  A+        
Sbjct: 252 LLVRGLDYYTNTAFEIMYEPLGAQSTICGGGRYDGLVNEIGGIQVPGIGMAIGMERLILA 311

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ----- 391
                        + + I    +  R     I   L K          G  +  +     
Sbjct: 312 LEQQNLFPEVKNENQVFIATVGEKARVKGVGIVKALRKQQIHA-----GTTMQEKSLKSL 366

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              AD   +P  VI+G   +   K  +K+  T  ++++  E ++ Y      
Sbjct: 367 LKQADKEKYPFVVIIGEDELQKGKAILKNMETKEQKEIDFETLVEYIKETVK 418


>gi|327463740|gb|EGF10056.1| histidine--tRNA ligase [Streptococcus sanguinis SK1057]
          Length = 426

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 58/407 (14%), Positives = 117/407 (28%), Gaps = 35/407 (8%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEDFARKTFKKYNYGEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
           +   +     +M     + F  +G+ ++ +   S       +                  
Sbjct: 137 SNPATD---VEMIAMAAQFFKDIGITNVSLELNSLGNPESRAAYRRALIDYLTPLKASLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D   P +    +   S+   +++ ++ Y A      E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESSTYFAAVRSMLETLQIPYVI 253

Query: 273 ENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
               V         IF F     G++ ++     + G        +    G G       
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAYFGGPETPGVGFGMGLERLL 313

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++         I         +                 ++   L   G     D +  +
Sbjct: 314 LVLDKQGVDLPIETALDVYVAVLGTGANGR-------ALELVQALRAQGFAAERDYLDRK 366

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + +QF  AD+      + +G   V   +V +K+        +SL+++
Sbjct: 367 LKAQFKSADIFKAKTLITLGESEVESGQVTVKNNYNREEITVSLDQI 413


>gi|78355058|ref|YP_386507.1| histidyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123755038|sp|Q317R4|SYH_DESDG RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|78217463|gb|ABB36812.1| histidyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 417

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 56/393 (14%), Positives = 110/393 (27%), Gaps = 16/393 (4%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +    R+  +  G  E+  P L+  +L+  S     D   KEM    DR ++++   P  
Sbjct: 24  MENTARDVFSSYGYGELRTPILERTELFCRSIGTETDVVQKEMYTFPDRKNRSLTMRPEA 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   +       +      +     FR E   +    R R+F   +          +
Sbjct: 84  TAGVMRAYIEGSLHSQEQVSKLFTFGPMFRYERPQKG---RMRQFHQINCECLGPQEPYA 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                 M + +L+     GL+         E  P        F+   DT E    C +  
Sbjct: 141 DAEIILMLLMFLKRIGLSGLELQINSLGCRECRPQYHAALRAFLASLDTAELCEDCRRRM 200

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA------RG 281
              P+   +        L +               H+  +   L     V        RG
Sbjct: 201 ETNPLRVLDCKVPRCKELTADAPVILDHTCDACSEHHSVVLGMLERAGVVYTANPRLVRG 260

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           ++  +   F        + +     G+   +   S   G                  +  
Sbjct: 261 LDYYNRTTFEVVCGEIGAQSSVAGGGRYDGLV--SQLGGPDVPGIGFACGMERLALALEQ 318

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            +          +   +Q   +    +   L + G           + SQ   A      
Sbjct: 319 KAQREVPRPDFLVAVLEQDGLERGMMLAEALRESGLKGEVSFAARSMKSQMRQAGKRNVR 378

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             +++G   ++D  V +K   TG +  +SL+  
Sbjct: 379 KVLLLGGSEIADGTVTVKDMDTGGQTTISLDAA 411


>gi|327458581|gb|EGF04931.1| histidine--tRNA ligase [Streptococcus sanguinis SK1]
          Length = 426

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 58/407 (14%), Positives = 121/407 (29%), Gaps = 35/407 (8%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
           +   +     +M     + F+ +G+ ++ +   S       +                  
Sbjct: 137 SNPATD---VEMITMAAQFFNDIGITNVSLELNSLGNPESRAAYRQALIDYLTPLKASLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D   P +    +   S+   +++ ++ Y A      E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEPEDKAAVEGAPSVLDYLDEESSIYFAAVRSMLETLQIPYVI 253

Query: 273 ENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
               V         IF F     G++ ++     + G        +    G G       
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLTICAGGRYDGLVAYFGGPETPGVGFGMGLERLL 313

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++                   + +  + A          ++   L   G     D +  +
Sbjct: 314 LVLDKQGVDL----PIETALDVYVAVLGAG---ANSRALELVQALRAQGFAAERDYLDRK 366

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + +QF  AD+      + +G   V + +V +K+        +SL+++
Sbjct: 367 LKAQFKSADIFKSKTLITLGESEVENGQVTVKNNHNREEITVSLDQI 413


>gi|325124479|gb|ADY84002.1| histidyl-tRNA synthetase [Acinetobacter calcoaceticus PHEA-2]
          Length = 430

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/426 (10%), Positives = 117/426 (27%), Gaps = 23/426 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    A   +   +    +  G  ++ +P ++   L+  +     D   KEM  
Sbjct: 9   GFNDILPSQTVAWRRLEQHLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            +D+ +         E     +         R      + +   FR E   +    +  +
Sbjct: 69  FSDKGNPPESLTLRPEGTAGCVRALVEHNLLRGATPRVWYMGPMFRYEKPQKGRYRQFHQ 128

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVL 213
           F ++         +             + +  ++ L+ +     +      +    F+  
Sbjct: 129 FGVETFGVATPDIDAELIMLTARLWKRMGVADKVQLELNTLGETDERTEYRNALVAFLNE 188

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-- 271
                 +    +     P+   ++  +    +     +        S  H ++L D L  
Sbjct: 189 HKDALDED-SQRRLTTNPLRILDSKIESTQKILENAPKLHDFLKEESLDHFKQLQDYLTA 247

Query: 272 -----------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                              + +        G++ ++     + G  G+       S    
Sbjct: 248 AGIQFVINQKLVRGLDYYNKTVFEWTTTALGSQGTVCAGGRYDGLVGQLKGKPDQSVPAV 307

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CD 378
              +    +    +              +          +     E++  +L        
Sbjct: 308 GFAMGMERLLLLLEQVEQAQVIRDCEVFLVAEPAYQTKALI--LAEQLRDQLEAANSSIR 365

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +        + SQ   AD  G    +I+G +     ++ IK   T  +  ++L E++ + 
Sbjct: 366 IKT-GSQGSMKSQMKKADQAGAVYAMILGEREWEAQQLAIKELATAEQSQVALAELVPFL 424

Query: 439 SHRFSN 444
             +F+ 
Sbjct: 425 IEKFTK 430


>gi|289548264|ref|YP_003473252.1| histidyl-tRNA synthetase [Thermocrinis albus DSM 14484]
 gi|289181881|gb|ADC89125.1| histidyl-tRNA synthetase [Thermocrinis albus DSM 14484]
          Length = 408

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 61/401 (15%), Positives = 109/401 (27%), Gaps = 22/401 (5%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAM 104
            +    V   +RE   R    E+ +P ++ A+L+  S     D   KEM    DR  + +
Sbjct: 18  LRKFRRVTQTVREVLRRFNFEEVILPVVEYAELFQRSIGDFTDIVQKEMFVFPDRKGRLL 77

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD 164
              P         +  +           +     FR E        R R+F    A  F 
Sbjct: 78  ALRPEGTASAVRAYLQNRLYTLRPYVKLFYEGPMFRYERPQAG---RYRQFHQIGAEVFG 134

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVF 222
                      K+    L+      +  I         P+  +   +F+     G     
Sbjct: 135 SEDPLVDAEVIKIVHLILKELGIPAVVEINSLGCKVCRPVYREALSKFLESV-AGHLCDV 193

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKR 276
           C +     P+   +              +           H+  +   L           
Sbjct: 194 CMERKDKNPLRVLDCKVTTCQEAVKEAPRMLDYLCEDCKKHHHSVKRYLEVMEVPYRENP 253

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F    S  ++ T     G  +   +   G      V   +       
Sbjct: 254 HLVRGLDYYTRTVF-EAVSETLNITII--AGGRYDYLVEELGGPPTPAVGFAVGVERLSM 310

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            +   +   P    +           +    +   L   G  V        +  Q  +A+
Sbjct: 311 LVSVQEEEEPLYFVIPFG-----QVEEYALMVADFLRSQGKRVEISYKKGSLKKQLELAN 365

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
                  VIVG    + S+V IK   TG +  + LE + +Y
Sbjct: 366 KFKARYAVIVGEDEKNSSEVSIKDLATGEQRRVKLEALKDY 406


>gi|257387357|ref|YP_003177130.1| histidyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
 gi|257169664|gb|ACV47423.1| histidyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
          Length = 436

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 67/423 (15%), Positives = 128/423 (30%), Gaps = 44/423 (10%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDK 102
           P    A   V   I     + G  E++ P L++ +++  +SG  +   +E+    D+  +
Sbjct: 13  PAEMAAYRQVIDEIETTARQYGFREITTPALEATEMYVDKSG--EEIVEELYHFEDKGGR 70

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +   P     +  +  +  +   + P  +   +  +R E   +    R REF   +   
Sbjct: 71  DVALTPELTPTVARMVVAKQQ-ELSKPIKWVSTRPFWRYEQVQQG---RFREFHQTNIDI 126

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
           F  +   +      +    L             R     I   L   F    DT +  + 
Sbjct: 127 FGSSEPTADAEILAVATDMLTGLGLSADDFDF-RVSHRDILTGLLESFEADVDTQD-AIR 184

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN--------EKLFDSLPEN 274
                             D        EQ+     A  D  +        E++ D++   
Sbjct: 185 VVDKRAKIDRDEYVEGLTDAGLSLDQAEQFDEWLRAGDDDLDALAEMSGSEQVADAVANL 244

Query: 275 K------------------RVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           +                    +ARG +   G +F           A F G    D     
Sbjct: 245 EAVLAAAEDFGVREYCTISLTTARGFDYYTGVVFECFDSTGEVSRAVFGGGRYDDLIEGF 304

Query: 315 GSYGIGAMRVVAAVIESSHD---GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           G     A+     V+ S+      +  +WP+        ++ +       R    +I   
Sbjct: 305 GGEPTPAVGFAPGVMNSTLPLLLQRAGVWPEEAVSTDYYVLQVGD----TRPVAARIARE 360

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G  V  D      G+Q   AD +     VIVG   + + +V +K   +G +    +
Sbjct: 361 LRESGHVVEADVSDRSFGAQMGYADSINAETVVIVGENDLENDEVTVKDMASGEQTTAPV 420

Query: 432 EEV 434
           +  
Sbjct: 421 DAF 423


>gi|292491215|ref|YP_003526654.1| histidyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
 gi|291579810|gb|ADE14267.1| histidyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
          Length = 421

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 115/415 (27%), Gaps = 38/415 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYG 107
              V   +R      G  E+ +P L+  +L+  S G   D   KEM    DRN  ++   
Sbjct: 21  WQMVEDTLRNVLASYGYQEIRLPLLEPTELFQRSIGEVTDIVEKEMYTFTDRNGDSLTLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P            H       P   +     FR E   +    R R+F            
Sbjct: 81  PEGTAGCVRSVLQHGL-LTQGPQRLWYYGAMFRHERPQKG---RYRQFFQIGVEVLGPKG 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVFCSK 225
                   ++ +   R + +LGL+ + ++  S   P       E +V   T         
Sbjct: 137 PDVD---VELILMTARFWRQLGLEGLRLQLNSLGSPAARATYRERLVDFFTDHQDCLDED 193

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQ---WTAPYAATSDVHNEKLFD------------- 269
                             +L  I+EQ           S  H E L D             
Sbjct: 194 SRRRLHSNPLRILDSKNPALQEIIEQAPRLLDYLDKDSRDHFEALQDLLDSAGIAYEINP 253

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
            L        R +        G++ ++     F G   +       + G          +
Sbjct: 254 RLVRGLDYYTRTVFEWVSDQLGSQGTVCAGGRFDGLVEQLGGQPTPAVGFALGLERLITL 313

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQ 387
                          A   + ++ +    +        +   L +   G  +  +  G  
Sbjct: 314 L-----GEQGCLKEPAIVDLYVVAVGPQAEHQSLL---LAEHLREAVPGVRLQVNYGGGS 365

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHR 441
             SQ   AD  G    +I+G   V    V +K  R    ++ M   ++ +Y   +
Sbjct: 366 FKSQLKRADRSGARWALILGEDEVVQGTVSVKDLRKAQPQQSMPQSKLPDYIRQQ 420


>gi|327471768|gb|EGF17209.1| histidine--tRNA ligase [Streptococcus sanguinis SK408]
          Length = 426

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 59/402 (14%), Positives = 115/402 (28%), Gaps = 25/402 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEDFARKTFKKYNYGEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
           +   +     +M     + F  +G+ ++ +   S       +                  
Sbjct: 137 SNPATD---VEMIAMAAQFFKDIGITNVSLELNSLGNPESRAAYRQALIDYLTPLKASLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D   P +    +   S+   ++  ++ Y AT     E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDAESSTYFATVRSMLETLQIPYVI 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               V         IF F T+ +         A G+   +     G     V   +    
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLT--ICAGGRYDGLVAYFGGPETPGVGFGMGLER 311

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      +       + +            ++   L   G     D +  ++ +QF
Sbjct: 312 LLLVLDKQGVELPIETALDVYVAVLGASANGRALELVQALRAQGFAAERDYLDRKLKAQF 371

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             AD       + +G   V   +V +K+        +SL+++
Sbjct: 372 KSADNFKAKTLITLGESEVESGRVTVKNNHNREEITVSLDQI 413


>gi|312220920|emb|CBY00861.1| similar to glycyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 658

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 65/146 (44%), Gaps = 8/146 (5%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------WPDSVAPFKISLINIKAH 357
            + +++   +     G  R+  A+ E  +  +          +P +VAP K+ ++ + +H
Sbjct: 493 ENVREYTPNVIEPSFGIGRIFYALCEHVYWTREQDKARGVLSFPPAVAPTKVLIVPLSSH 552

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   + + ++L  +G     D  G  IG +++  D LG PL + V  + V D+   
Sbjct: 553 -PDFSPFVQTLRSKLRSIGISSRIDASGASIGKRYSRNDELGTPLGITVDFQSVKDNTFT 611

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ R +  +   S++E+I   S+  +
Sbjct: 612 LRDRDSTEQVRASIDEIIAAISNIVN 637



 Score = 44.7 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G    DN+  + +         +++    L   ++   SG  D +   M +
Sbjct: 39 AGLYDYGPAGTALTDNIVDVWKRHFVLEEDMLQVDCTMLTPHEVLKTSGHVDKFADWMCK 98


>gi|308272198|emb|CBX28804.1| Histidyl-tRNA synthetase [uncultured Desulfobacterium sp.]
          Length = 417

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 127/408 (31%), Gaps = 23/408 (5%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIY 106
               +           G  E+ +P ++  +L+  S G+  D   KEM    ++ D+ +  
Sbjct: 18  LWQKIEKTAISLFESFGFCEIRLPIIEHTELFARSIGQDTDIVEKEMYTFLNKKDEMITL 77

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +   +  H     +    FY I   FR E   +    R R+F   +A    + 
Sbjct: 78  RPEATASIVRAYIQHRLYAIDPVQKFYTIGPMFRRERPQKG---RYRQFYQINAEVLGVD 134

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHEFIVLADTGETQ 220
              +      M V  L    RL +  + +   S       P       +F+    T    
Sbjct: 135 SPLTDAQLIFMLVELL---KRLSVPDVCVYLNSLGCPVCRPGFKKSLQKFMSNT-TAMLC 190

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------EN 274
             C +     P+   +                        + H E + +SL       E 
Sbjct: 191 SDCERRKEKNPLRVLDCKVLACREAMKDAPSIIEHLCNECEEHFEAVKNSLNDLNIQFEI 250

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            +   RG++      F   ++  + A    A G  +   + S G G  +           
Sbjct: 251 DKRLVRGLDYYTRTTF-EVHTGSLGAQSAVAGGGRYDRLIESLG-GPSQPAIGFAIGFDR 308

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
              II  D+        + I A  +  R    K    LS  G     D   + +  Q   
Sbjct: 309 LAEIISSDNAGVSCKPDLFIAALGEQARTNALKWSCALSLSGIKTETDFSDKGLKGQMKK 368

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           AD L     +I+G   +S+    +++ +T  +  + ++ ++      F
Sbjct: 369 ADRLAAGHVLIIGDNELSEGSAILRNMMTKEQVSVPIDGIVEKLKSIF 416


>gi|300728125|ref|ZP_07061497.1| glycine--tRNA ligase [Prevotella bryantii B14]
 gi|299774639|gb|EFI71259.1| glycine--tRNA ligase [Prevotella bryantii B14]
          Length = 519

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 118/355 (33%), Gaps = 47/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM  L+D  +K  +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 197 FSTEMGSLSDATNKIYLRPETAQGIFVNYLNVQKTGRMKLPFGICQIGKAFRNEIVARQF 256

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           V R REF   +   F   P      +     + L     LG              GD ++
Sbjct: 257 VFRMREFEQMEMQFFCQ-PGTEMKWFEYWKKARLAWHKALG-------------MGDENY 302

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            +             +      P                        +     +H+   F
Sbjct: 303 RYHDHEKLAHYANAATDIEFHLPF----------------------GFKEVEGIHSRTDF 340

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D L ++++ S RGI+     +   +    +    + + G D                   
Sbjct: 341 D-LSQHEKFSGRGIKY----FDPERNESYVPYDVETSIGVDRMFLSVM----CHSYTEET 391

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P+++AP K ++  +   D    +   +I   L     +  + D  + I
Sbjct: 392 LENGETRVVLKLPEALAPVKCAVFPLDKKD-GLPELAHEIVDNLK-FHFNTHYGDPKDSI 449

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  V V  +   D KV ++ R T  +E + ++++ +    R S
Sbjct: 450 GKRYRRQDAVGTPFCVTVDHETPKDHKVTLRFRDTMEQERVDIDQLRSIIEDRVS 504


>gi|218194779|gb|EEC77206.1| hypothetical protein OsI_15722 [Oryza sativa Indica Group]
          Length = 637

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 99/360 (27%), Gaps = 24/360 (6%)

Query: 96  LADRNDKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D++          E +M     +   KS   L       +    +E     G    R 
Sbjct: 256 PEDKSHPKFRDVSDLEFLMFPREQQLTGKSAMKLNIGQAVSEGTVNNE---TLGYFIGRV 312

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           +L       D      +         Y        ++      E   I    +++    +
Sbjct: 313 YLFLTQLGIDKDRLRFRQHLPNEMAHYAADCWDAEIECSFGWIECVGIADRSAYDLRAHS 372

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D     +   + F +     +         L    +          +  +E    +L   
Sbjct: 373 DKSGVALEAHEKFAEPREVEKLVITPSKKELGLAFKGNQRMVLEALEAMSETE--ALNMK 430

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKG-----ADGKDHYVQMGSYGIGAMRVVAAVI 329
             + ++G     +   G   ++  S             +     +     G  R++  + 
Sbjct: 431 SALESKGEVEFKVCTLGKDVTIKKSMVSINMEKKKEHQRKFTPSVIEPSFGIGRIIYCLF 490

Query: 330 ESSHDGKG---IIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVF 380
           E     +         +V  F   +  IK         +      +KI   L+  G    
Sbjct: 491 EHCFYQRPGKAEDEQLNVFGFPPLVAPIKCTVFPLVKIEKFEVVAKKISKALTAAGISHI 550

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D  G  IG ++A  D +G PL + V +       V ++ R +  +  + ++EV +    
Sbjct: 551 IDMTGNTIGKRYARTDEIGVPLAITVDNTT----SVTVRDRDSKDQIRVEVDEVASVVKE 606



 Score = 53.2 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     NV A  R+      G +E+  P +    +   SG  D +   M++
Sbjct: 43  AGLYDYGPPGCAVKANVLAFWRQHFVLEEGMLEVDCPCVTPEVVLKASGHVDKFTDLMVK 102

Query: 96  LADRNDKAMIYGPTHEEVM 114
             ++           ++  
Sbjct: 103 D-EKTGTCYRADHLLKDFC 120


>gi|120601078|ref|YP_965478.1| histidyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
 gi|166227965|sp|A1V9B1|SYH_DESVV RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|120561307|gb|ABM27051.1| histidyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
          Length = 417

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 60/419 (14%), Positives = 113/419 (26%), Gaps = 33/419 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G     P        + ++ R+   R G +E+  P L+  DL+  S     D   KEM  
Sbjct: 9   GFADLFPPESDVFTRMESVARQVFGRYGFVELRTPILERTDLFCRSIGTETDVVQKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR D+++   P     +   +    +  +      +     FR E   +    R R+F
Sbjct: 69  FPDRKDRSLTMRPEATAGVMRAYIESGRHTQEPVSKLFTSGPMFRYERPQKG---RMRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIV 212
              +          +      M + +L      GL          E  P+      +F+ 
Sbjct: 126 HQINCEVLGPVEPHADAELVLMLMRFLTELGLTGLSLQINSLGCKECRPLYRKALSDFLA 185

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK------ 266
             D       C +     P+   +        L +               H +       
Sbjct: 186 SIDNAALCEDCRRRMETNPLRVLDCKVPGCRELTANAPTILEHNCPECRTHFDAVLRILD 245

Query: 267 -------LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  L D L        R          G++ S+     + G   +     +   G 
Sbjct: 246 SRNVPYVLNDRLVRGLDYYNRTTFEVVSDSIGSQGSVAGGGRYDGLISQLGGPDVPGVGF 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                  A++    +     +  +V         +                 L   G   
Sbjct: 306 ACGMERLALMMPGAEAPRPHFHVAVLDPAAQDAALLLA------------EDLRAQGLAG 353

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
                   I S+  +A   G    +I+G   ++   V +K   +G +E +  + V    
Sbjct: 354 SVGFGAGSIKSRMRLAGKSGARACLILGGDELAAGTVVVKDMDSGEQETIGRDAVAARL 412


>gi|310778224|ref|YP_003966557.1| histidyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
 gi|309747547|gb|ADO82209.1| histidyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
          Length = 413

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 114/403 (28%), Gaps = 22/403 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            +++    +E     G   + +P  +  +L+        D   KEM    DR D+++   
Sbjct: 21  YNHIVNTAKEVFEAYGYSMIKIPIFEETNLFKRGIGEGTDVVEKEMYTFTDRGDRSITLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  H    +     +Y     FR E        R REF      +     
Sbjct: 81  PEGTASVVRSYLEHKIYGKEEFTRYYYTGSMFRYERPQAG---RQREFNQLGIEALGEGS 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVLADTGETQVFCS 224
                    M  + L       L+         ES     D    F+  +   E    C 
Sbjct: 138 PILDAEVIAMSYTLLEKLGITDLEVNINSVGGNESRSKYRDTLINFLTPS-KDELCEDCR 196

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVS 278
             +   P+   +        +                 H E +   L             
Sbjct: 197 ARYERNPLRVLDCKNPKCKEITEEAPSIIDSLNQEEREHYESVKKYLDIFGIKYRENSRL 256

Query: 279 ARGIEVGHIFYFGTKYSL-PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
            RG++      +    +      T  G    D+ ++            AA IE       
Sbjct: 257 VRGLDYYSSTVYEVITNKLGSQGTVLGGGRYDNLLKQLGNKEIPAVGFAAGIERLMMLLE 316

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
               ++   F   L      D+        I   L   G     +     + +    AD 
Sbjct: 317 DYPKNNPEVFIAWLG----KDEAT--YAFGIAKALRDAGIKTCIEFSSRSLKASMKKADK 370

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           LG    +I+G + +++ K+ +K+     +E +S+E+VI     
Sbjct: 371 LGVGHAIIIGDEEMANKKMVLKNFQERTQETLSIEDVIKRLKK 413


>gi|229491999|ref|ZP_04385816.1| histidyl-tRNA synthetase [Rhodococcus erythropolis SK121]
 gi|229321131|gb|EEN86935.1| histidyl-tRNA synthetase [Rhodococcus erythropolis SK121]
          Length = 423

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 61/398 (15%), Positives = 114/398 (28%), Gaps = 31/398 (7%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   + +P  +   L+        D   KEM   ADR D+++   P     +      H
Sbjct: 38  AGYGHIELPIFEDTGLFARGVGESTDVVSKEMYTFADRGDRSVTLRPEGTAGVMRAVIEH 97

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                 LP         FR E        + ++  ++        P             +
Sbjct: 98  SLDRGQLPVKVSYAGPFFRYERPQAGRYRQLQQVGVEAIGI--DDPALDAEVIAIADAGF 155

Query: 182 LRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGET-----QVFCSKDFMDFPIPS 234
             +        I    +    P   +L  EF+      E      ++   +   D     
Sbjct: 156 RSLGLDGFRLEITSLGDDTCRPQYRELLQEFLFALPLDEDTRRRAEINPLRVLDDKRPDV 215

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY----- 289
                   + L+ + E   A +       +      +   + V          F      
Sbjct: 216 REMTAGAPLMLDHLSESCKAHFDEVLAHLDALGVPYVVNPRMVRGLDYYTKTTFEFVHDG 275

Query: 290 FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            G +  +     + G         +    +GIG  R V A+              SVAP 
Sbjct: 276 LGAQSGIGGGGRYDGLMEQLGGQPLSGIGFGIGVDRTVLAL---------EAEGKSVAPP 326

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVI 405
               +         + A  KI  +L   G  V         G +     AD  G  + ++
Sbjct: 327 ARVDVFCVPMGAEAKAALVKIAHQLRANGIRVDLAYGNR--GVKGSMKAADRSGAAIALV 384

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G + + +  V +K   TG +E ++L++V++       
Sbjct: 385 LGERELEEGVVVVKQLATGEQEAVALDQVVDKLGELVE 422


>gi|193203271|ref|NP_001122525.1| Prolyl tRNA Synthetase family member (prs-2) [Caenorhabditis
           elegans]
 gi|148472914|emb|CAN86903.1| C. elegans protein T27F6.5d, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 138

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 60/116 (51%)

Query: 23  HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE 82
           H +++  G I   +KG YS LPLGQ+ +D +  I+  E   +GA+++++P + +  LW +
Sbjct: 23  HTMLVENGFILPTAKGFYSLLPLGQRVIDKLCRILDVEFQNSGALKIAMPIVGTQQLWEK 82

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           +GR+++ G EM+R  DR    M     +          +  + + +  + Y +  +
Sbjct: 83  TGRWEAMGPEMIRFHDRQQNHMCLQVANRRGNVHRTDRNTITAQKITISPYCLSNR 138


>gi|237719787|ref|ZP_04550268.1| glycyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|229451056|gb|EEO56847.1| glycyl-tRNA synthetase [Bacteroides sp. 2_2_4]
          Length = 513

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 69/395 (17%), Positives = 128/395 (32%), Gaps = 57/395 (14%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD-SYGKEMLRLADRNDKAMIYGP 108
           L+ +  II +E       E+  P +     W E  +++  +  EM   ++   K  +   
Sbjct: 166 LEELRQIIIDE-------EIVCP-ISGTKNWTEVRQFNLMFSTEMGSTSEGAMKIYLRPE 217

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   QI   FR+E+  R  + R REF   +   F   P 
Sbjct: 218 TAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFFVK-PG 276

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                + K     L+    LG      R         L+H      D      F  K   
Sbjct: 277 TELDWFKKWKEIRLKWHKALGFGDASYRYHD---HDKLAHYANAATDIEFLMPFGFK--- 330

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                 E         L+   +             NE     + E      R        
Sbjct: 331 ----EVEGIHSRTNFDLSQHEKFSGKSIKYFDPELNESYTPYVIETSIGVDR-------- 378

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                +   MSA++                          +E+      +  P ++AP K
Sbjct: 379 ----MFLSIMSASYCEE----------------------QLENGESRVVLKLPAALAPVK 412

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ +   D    +   ++   L        +D+    IG ++   D +G P  V V  
Sbjct: 413 LAVMPLVKKDS-LPEKAREVIDSLK-FHFHCQYDEKD-SIGKRYRRQDAIGTPYCVTVDH 469

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + D+ V +++R T  +E +++ E+ N  + R S
Sbjct: 470 QTLEDNCVTLRNRDTMQQERVAISELNNIIADRVS 504


>gi|308233928|ref|ZP_07664665.1| histidyl-tRNA synthetase [Atopobium vaginae DSM 15829]
          Length = 436

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 84/326 (25%), Gaps = 18/326 (5%)

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHR 187
           P   +  +  FR E   +    R R+F              +       +   Y R+   
Sbjct: 117 PLKVWYGEAMFRGERPQKG---RLRQFHQIGCEWLGADDPCADAECIMMLMEFYTRMGFE 173

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
                + + +           E +           C        I             + 
Sbjct: 174 PNQLVLHINSMGDQACRPAYRESVRAFIKDHQDQMCPDCLERATINPLRAFDCKNEHCHE 233

Query: 248 IV-----------EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           I+            +    Y       +E     + +   V         +F      + 
Sbjct: 234 IMSDAPLAKDNLCAECKTHYERVKAFLDEAHVAYVEDPTLVRGLDYYTRTVFEIECPQAH 293

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             S    G       ++ G    G      A+           +         + + +  
Sbjct: 294 VGSIGGGGRYDGLVELEGGRPTCGLG---WALGFERMILALQTFGTQPWKTTPACVYVAF 350

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                R     + A+L + G     +  G  + SQF  AD LG  L V++G     +  V
Sbjct: 351 TSDAERMYAFNVCAQLRQAGIRTESNYQGRSLKSQFKQADKLGARLCVVIGEHETQNQSV 410

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            ++   T  + ++ L  +++  + + 
Sbjct: 411 TVRDMQTHEQTEIQLTNLVSQLTAKL 436


>gi|325117657|emb|CBZ53209.1| tRNA synthetase Gly, related [Neospora caninum Liverpool]
          Length = 716

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 73/533 (13%), Positives = 149/533 (27%), Gaps = 116/533 (21%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
           L+ +    E    +L  + G+  + +  +              +A+  +E       E+ 
Sbjct: 172 LRADKYLEEKIDERLNAKEGISPEEASRL-------ALLRRQADALSVQEMKAA-LEEVQ 223

Query: 71  ------------VPT-------LQSADLWVESG-----RYDSYGKEMLRLADRNDKAMIY 106
                        P        +   D   ESG           K          +  + 
Sbjct: 224 AKSPAGNPLSDPFPFNLMFGLKIGPKD---ESGASEVPHDARSQKGAASSRSAEGRGYLR 280

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
             T + +  +  R    +   +PF   Q+ L FR+E+ PR G++R REF M +   F   
Sbjct: 281 PETAQGIFVNFRRLLEFNGGRMPFAAAQLGLGFRNEIAPRNGLLRVREFQMGEIEHFVHP 340

Query: 167 PEGSKHSYNKMFVSYLRIFHRLG------------------------------------L 190
                  ++ +    L +F R                                       
Sbjct: 341 DHKDHPKFHMVKDLKLPLFSRENQLTDGKVLRDVTVGEAVAKKIIDNETLGYFLARTYLF 400

Query: 191 KSIPMRAESGPIGGDL--SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
            +    A+SG        S       D  + +V CS  +++    ++ + FD        
Sbjct: 401 LTRCGIADSGLRFRQHLTSEMAHYAKDCWDAEVECSYGWVEVAGHADRSAFDLTSHSKVS 460

Query: 249 VEQWTA-------------PYAATSDVHNEKLFD-------SLPENKRVSARGIE----- 283
                A              Y     +  +   D       ++ E        IE     
Sbjct: 461 KVDLIASRKFDSPQVVEFVKYTPNKGLCGKTFKDRQQALHEAIEEKSDADRLAIEAALAS 520

Query: 284 ---------VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES--- 331
                     G +F    +      AT K    +     +     G  R++  ++E    
Sbjct: 521 EGKYSLALCSGEVFEISREMMKFEKAT-KKVSEESFVPAVIEPSFGIGRILHCIMEHAFR 579

Query: 332 -----SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                  + +  +   ++      +I   + +    D  ++        G     D    
Sbjct: 580 SRGIVDQEERCYMAFPAIIAPTKCIILPISSNPSFADLLQRARDGCVARGISAKVDASTA 639

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            IG ++A  D +G P  + V    + D  V ++ R +  +  + L + ++  +
Sbjct: 640 SIGKRYARNDEVGTPFAITVDFDSLKDDSVTVRERDSMEQIRVPLADAVDLVA 692



 Score = 50.9 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           G+Y + P G      V  + R+        +E+S P L    +   SG  D +   M++ 
Sbjct: 106 GLYDFGPPGCALKSAVEQLWRQHFVLAEDMLEVSGPCLTPHIVLKTSGHVDRFTDLMVKD 165

Query: 97  ADRNDKAMIYGPTHE 111
               D         E
Sbjct: 166 TVTQDCLRADKYLEE 180


>gi|302878619|ref|YP_003847183.1| histidyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
 gi|302581408|gb|ADL55419.1| histidyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
          Length = 424

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 56/420 (13%), Positives = 113/420 (26%), Gaps = 22/420 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DSYGKEMLR 95
           G+   LP   +       ++R+     G   + +P ++   L+    G   D   KEM  
Sbjct: 11  GMNDILPDEAELWLWFEGVVRDWLASYGYRNIRMPLVEPTSLFCRAIGEVTDIVEKEMYS 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMR 151
             D  +   +                     N P   Y     FR E       R     
Sbjct: 71  FEDSLNGDQLTLRPEGTASCVRAVLQHNLLYNAPQRLYYSGPMFRHERPQKGRYRQFHQV 130

Query: 152 SREFLMKDAYSFDLTPEGSKH--SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
             E L       D                       + LG      R  +  I     ++
Sbjct: 131 GVEALGFAGPDIDAEQILMCARLWKKLGLTDVTLQLNTLGDVESRQRHRAKLIAYFEQNK 190

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT----APYAATSDVHNE 265
            ++ A+            +D   P+     +    L   +++      A   A    H  
Sbjct: 191 ELMDAEAVRRLHSNPLRILDSKNPAMQELIEAAPRLMDELDEAALSHFAAVQAILTQHGV 250

Query: 266 K--LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L        R +        G + ++     + G    +      +  +G   
Sbjct: 251 AFEINPRLVRGLDYYNRTVFEWVTTRLGAQGTICAGGRYDGLV--EQIGGKPAPAMGFAM 308

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  ++    +    +    V  + +         ++       +  +L   G  V    
Sbjct: 309 GIERLLVLLQEAGMALPKPQVDVYVVHQG------ELAARLASSVAEQLRDYGLRVVMHC 362

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            G    SQ   AD  G  + V++G      ++V +K    G +E +S++ +    +    
Sbjct: 363 GGGSFKSQMKKADASGACVAVVIGDDEAQSNEVSVKPMQGGAQERVSVQNLATTINKLIK 422


>gi|118577094|ref|YP_876837.1| glycyl-tRNA synthetase (class II) [Cenarchaeum symbiosum A]
 gi|118195615|gb|ABK78533.1| glycyl-tRNA synthetase (class II) [Cenarchaeum symbiosum A]
          Length = 445

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 124/351 (35%), Gaps = 31/351 (8%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           + A +   T + +  D  R        LP    Q+   FR+E+ PR  ++R REF   + 
Sbjct: 116 EPAYLRPETCQSIFVDFPRIFKTMRGRLPLGIAQVGKSFRNEISPRQSLLRLREFYQAEI 175

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
             F    +  +    ++  + LR+      +++    A    I  +    + +    G  
Sbjct: 176 EVFCNPGKLDEADLAEVAGAVLRVDQGGKTVETGCAEAVESGIIPNRFVAYHL----GLL 231

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
             F  K  +D                  + E+  A YA  +     +      E    + 
Sbjct: 232 AEFYEKTGIDM----------GKSRFRRLGEKEKAFYAEAAFDFEVETTVGWLELVACNY 281

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHY-VQMGSYGIGAMRVVAAVIES------S 332
           R              +      F+  DG++     +    +G  R +  ++E        
Sbjct: 282 RSDYDLSAH------AKKSGEKFEVMDGEEKVLPHVFEMSMGIDRSLYTILEHSLREDAE 335

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
           ++   +     +AP  + ++++       R+  ++I+  +     D F D  G  IG ++
Sbjct: 336 NERTVLSVRPYLAPVHVGVLSLVKKG-GLREKTDEIHGAIR-RDYDAFLDHSGA-IGRRY 392

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              D +G PL + +  + + D  V ++ R T  ++ + ++E+    S   +
Sbjct: 393 RRLDEIGAPLAITIDHRTLEDGTVTVRRRDTMEQDRIKIDEINGLLSTELA 443


>gi|288930008|ref|ZP_06423849.1| glycine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328667|gb|EFC67257.1| glycine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 513

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 115/355 (32%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM  L+D   K  +   T + +  +           +PF   QI   FR+E+  R  
Sbjct: 198 FSTEMGSLSDAASKIYLRPETAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F +TP      ++K   + ++    LG  +   R           H
Sbjct: 258 IFRMREFEQMEMQ-FFVTPGTELDWFHKWKETRMKWHQALGFGAENYRFHD--------H 308

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E +       + +     F                            +     +H+   F
Sbjct: 309 EKLAHYANAASDIEFRMPF---------------------------GFKEVEGIHSRTDF 341

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     K         G    +    +      +             S    A       
Sbjct: 342 DLSQHEK-------FSGKSIKYFDPQTNESYTPYVIETSIGVDRMFLSVMCHAFEE--EK 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P ++AP K++++ +   D    +   +I   L     +  +D+    I
Sbjct: 393 LENGETRTVLKLPAALAPVKLAVLPLVKKD-GLPEKAREIVNNLK-FKFNTHYDEKD-TI 449

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  V V    ++D+ V ++ R    +E ++++++ N    + S
Sbjct: 450 GKRYRRQDAIGTPYCVTVDHDTLTDNCVTLRFRDNMQQERVNIDQLENIIEDKVS 504


>gi|83747948|ref|ZP_00944979.1| Histidyl-tRNA synthetase [Ralstonia solanacearum UW551]
 gi|83725366|gb|EAP72513.1| Histidyl-tRNA synthetase [Ralstonia solanacearum UW551]
          Length = 440

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 53/425 (12%), Positives = 102/425 (24%), Gaps = 30/425 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      ++ +  +R      G  ++  P ++   L+V   G   D   KEM  
Sbjct: 17  GMNDLLPGDAPLWEHFDNAVRSMLRAYGYQQIRTPIVEHTQLFVRGIGEVTDIVEKEMYS 76

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMR 151
             D  +   +                     + P   +     FR E   R         
Sbjct: 77  FTDSLNGEQLTLRPEGTAAAVRAVIEHNLLYDGPKRLWYTGPMFRHERPQRGRYRQFHQV 136

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             E L       D                         L     RA           +F 
Sbjct: 137 GVEALGFAGPDIDAEVILMCQRLWDDLGLVGLKLELNSLGQAEERAAHRADLIKYLEDFQ 196

Query: 212 VLADTGETQVFCSKDF--MDFPIPSENTD------FDDIISLNSIVEQWTAPYAATSDVH 263
            + D    +   +     +D   P+            D +   S+           ++  
Sbjct: 197 DILDEDSKRRLYTNPLRVLDTKNPALQEMAAGAPKLIDYLGEASLKHFEGVQALLKANNI 256

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L          +        G + ++     +     +       + G     
Sbjct: 257 PYTINPRLVRGLDYYNLTVFEWTTDKLGAQGTVAGGGRYDPLIEQIGGKPAPACGWAMGV 316

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW-- 381
                +                   + +++     QV          RL   G DV    
Sbjct: 317 ERIIELLR-----EEKLAPEPQGCDVYIVHQGDQAQVQALVA---AERLRDAGLDVILHC 368

Query: 382 --DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEVI 435
             +       SQF  AD  G    VI+G   V+    +IK          ++ +  ++++
Sbjct: 369 SPEGRNGSFKSQFKRADASGASYAVIIGDDEVAAGVAQIKPLRGEPNADTQQTVPSDQLV 428

Query: 436 NYASH 440
           +    
Sbjct: 429 DRLID 433


>gi|294670885|ref|ZP_06735741.1| hypothetical protein NEIELOOT_02589 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307372|gb|EFE48615.1| hypothetical protein NEIELOOT_02589 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 430

 Score = 90.2 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 68/426 (15%), Positives = 125/426 (29%), Gaps = 32/426 (7%)

Query: 38  GIYSWLPLGQK-------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           G+   LPL QK              ++R+   R G  ++  P L+   L+V S     D 
Sbjct: 10  GMNDLLPLEQKDFKLTSAFWQAFEDVVRKWTRRFGYSQIRTPILEQTGLFVRSIGEETDV 69

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP--- 145
            GKEM   +D ND   +                     N P   + +   FR E      
Sbjct: 70  VGKEMYTFSDSNDTLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERPQKGR 129

Query: 146 -RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGP 201
            R       E L  D    D           +            + LG K       S  
Sbjct: 130 YRQFHQVGVEALGFDGPDVDAEMIAMCADLWRELGISDFLTLEINNLGNKEERAAHRSAL 189

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATS 260
           +     HE I+  D+           +D   P      +     L+ + E+  A Y    
Sbjct: 190 VAYLQQHEAILDEDSKRRLKTNPLRVLDSKNPDLQAVCNQAPRLLDYLGEESLAHYNGFK 249

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIF-----YFGTKYSLPMSATFKGADGKDHYVQMG 315
            + +      +   + V         +F       G + ++     + G  G+       
Sbjct: 250 RLLDVLGIAYVENPRLVRGLDYYNLTVFEWTTDKLGAQATVCGGGRYNGLIGELGGKD-- 307

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           +  IG    +  ++   H+   +    +   + +         +   +A     +RL   
Sbjct: 308 APAIGFAMGIERLLLLVHEYGRLKTDAAPDIYVMQQ-------EEGLEAAINYASRLRAA 360

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEV 434
           G +V      + + +Q   AD  G    +IVG     +    +K       ++ ++  E+
Sbjct: 361 GFNVLQHCGNQSLKNQMKKADASGARFALIVGEDEAENGTATVKDLQGQFGQQTIASAEL 420

Query: 435 INYASH 440
               + 
Sbjct: 421 TTLLTQ 426


>gi|238027072|ref|YP_002911303.1| histidyl-tRNA synthetase [Burkholderia glumae BGR1]
 gi|237876266|gb|ACR28599.1| Histidyl-tRNA synthetase [Burkholderia glumae BGR1]
          Length = 446

 Score = 90.2 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 116/426 (27%), Gaps = 29/426 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A  +      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAALWEFFEATAKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FTDSLNGENLTMRPENTAAVVRASIEHNLLYDGPKRLWYIGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 TGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               Q+     +     P+   +T    +  +     +       TS  H E L   L  
Sbjct: 193 QFADQLDEDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGDTSRAHFEGLQRLLKA 252

Query: 274 NKR------VSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           N           RG++     +F + T     + A    A G  +   +   G       
Sbjct: 253 NNVPFTINPRLVRGLDYYNLTVFEWVTDK---LGAQGTVAAGGRYDPLIEQLGGKPTAAC 309

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW---- 381
              +      + +     V       + I    +  R+    I  RL   G DV +    
Sbjct: 310 GWAMGIERILELLKEEQLVPEQDGVDVYIVHQGEAAREQAFIIGERLRDTGLDVIFHCSA 369

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-------GIREDMSLEEV 434
           D       SQ   AD  G    VI+G   V++  V +K             ++ +++E +
Sbjct: 370 DGASASFKSQMKRADASGAAYAVILGEDEVANGTVGVKALRGAGADGEKSEQQTVTVENL 429

Query: 435 INYASH 440
             +  +
Sbjct: 430 TEFLIN 435


>gi|319789550|ref|YP_004151183.1| histidyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
 gi|317114052|gb|ADU96542.1| histidyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
          Length = 410

 Score = 90.2 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 126/412 (30%), Gaps = 20/412 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP   +  + V    ++   R G  E+ +P  +   L+  S     D   KEM  
Sbjct: 8   GVEDLLPPESEKFEKVVDTFKKVVKRAGFKEVILPIFEDVRLFTRSVGETTDIVQKEMYV 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+  + +   P         +  H    +     ++ +   FR E        R R+F
Sbjct: 68  FEDKGGRTIALRPEGTASAVRAYIEHGVFAKEPFTKWFYVGPMFRFERPQAG---RRRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
                  F L   G+      +  S L+         +     S   P       EF+  
Sbjct: 125 FQAGCEVFGLEQPGADAEVIYLAHSLLKALAVEAELELNSIGCSSCRPEYRGKLLEFLEE 184

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP- 272
              G+    C   F   P+   +   +   ++     + T         H EK+ + L  
Sbjct: 185 N-KGQLCENCLSRFERNPLRVLDCKEEQCRAVVEKAPKITDYLCRECKEHYEKVKELLNL 243

Query: 273 -----ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                +   +  RG++      F  K     + +   A G+   +     G         
Sbjct: 244 MEVPFKENPLLVRGLDYYTRTVFEFKSDKLGAQSTVLAGGRYDNLVKQLGGPKTP----- 298

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
            +  +     I+        K   + +    +       ++   L + G     D     
Sbjct: 299 ALGFAMGIDRIMLLIESPDRKREGVFVVTRGEEGYRKGLELVKFLREKGVKAEIDHRQGS 358

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEEVINYA 438
             +Q   AD       VI+G + + +  + +K   TG +E + + EE++   
Sbjct: 359 FKAQMKAADRCRAKFAVIIGEEELQNDFLSLKELETGKQEKVETPEELLARL 410


>gi|254431552|ref|ZP_05045255.1| histidyl-tRNA synthetase [Cyanobium sp. PCC 7001]
 gi|197626005|gb|EDY38564.1| histidyl-tRNA synthetase [Cyanobium sp. PCC 7001]
          Length = 421

 Score = 90.2 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 60/421 (14%), Positives = 109/421 (25%), Gaps = 28/421 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP       +V A       R    E+  P L+  +L+        D  GKEM  
Sbjct: 9   GMVDLLPEHTPLWQHVEATAAAHFRRAAIREIRTPLLEVTELFARGIGEATDVVGKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +++    P     +      H       P   +     FR E        R R+F
Sbjct: 69  FLDRGERSCTLRPEGTASVVRAAIQHGL-LSQGPQRLWYGGPMFRYERPQAG---RQRQF 124

Query: 156 LMKDAYSF-DLTPEGSKHSYNKMFVSYLR--------IFHRLGLKSIPMRAESGPIGGDL 206
                       P     +    +               + LG      R  +  +    
Sbjct: 125 HQIGLELLGFADPRSDVEAIAIAWDLLADLGVGGLALELNTLGSPDDRARYRAELVAWLE 184

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD------DIISLNSIVEQWTAPYAATS 260
           +H   + AD+ +         +D   P+     +      D +S  S            +
Sbjct: 185 AHRDQLDADSQQRISTNPLRVLDSKHPATQELLEGAPSLADALSGESHERFSQVRQGLEA 244

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 L   L       +           G + ++     + G   +       + G  
Sbjct: 245 LGIPFTLNPRLVRGLDYYSHTAFEITSSQLGAQATVCGGGRYDGLVQQLGGAPTPAIGWA 304

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                  ++                 + +S                 +     + G  V 
Sbjct: 305 MGMERLVLLLQRSAEAASASVAPPDLYVVSRGV------QAEALALPLARLCRQAGLVVE 358

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYAS 439
            D  G     QF  AD  G P   ++G +  +   V ++  R  G    +S E+++    
Sbjct: 359 IDPSGAAFSKQFRRADRSGAPHAAVIGDEEAAAGVVILRELRGDGADRRLSPEQLLAALR 418

Query: 440 H 440
            
Sbjct: 419 E 419


>gi|68480224|ref|XP_715922.1| hypothetical protein CaO19.8067 [Candida albicans SC5314]
 gi|68480339|ref|XP_715872.1| hypothetical protein CaO19.437 [Candida albicans SC5314]
 gi|46437515|gb|EAK96860.1| hypothetical protein CaO19.437 [Candida albicans SC5314]
 gi|46437567|gb|EAK96911.1| hypothetical protein CaO19.8067 [Candida albicans SC5314]
          Length = 652

 Score = 90.2 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/365 (10%), Positives = 98/365 (26%), Gaps = 48/365 (13%)

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
                  KS+                 ++       S E + +       +      +  
Sbjct: 273 HYVDPESKSHPKFEDVKDIKLKFLPKNVQE----SGSTELIEESIGKAVSSGMVDNETLG 328

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
                      ++G+ +  +R          +      +D  + ++  S  +++    ++
Sbjct: 329 YFIARIYLFLVKIGVDTNRLRF----RQHMSNEMAHYASDCWDAELETSYGWIECVGCAD 384

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY------ 289
            + +D  +      E+  A          E     + + K       + G +        
Sbjct: 385 RSAYDLSVHSARTGEKLVARQTLAEPRTVENFEIEIAKKKFGPKFRKDAGTVEKWLTSRT 444

Query: 290 ------FGTKYSLPMSATFK----------------------GADGKDHYVQMGSYGIGA 321
                  G + S       +                          ++    +     G 
Sbjct: 445 QCELEELGKELSEKGKIVVQIKGVEGDVELDGDLIKIDKVKRTEHVREFVPNVIEPSFGI 504

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++ ++ E     +       V      +   K      +++   +   +K+   L K 
Sbjct: 505 GRILYSIFEHQFWCRPDDADRGVLSLPPIVAPTKVLLVPLSNNSELQPIVKKVSQALRKE 564

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                 DD    IG ++A  D LG P  + +    V D  V ++ R +  +   S++E++
Sbjct: 565 KIPFKVDDSSASIGKRYARNDELGTPFGITIDFDSVKDDSVTLRERDSTKQVRGSIQEIV 624

Query: 436 NYASH 440
                
Sbjct: 625 EAIKD 629



 Score = 44.3 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G++ + P G    +NV    R+        +E+    L   D+   SG  D +   M +
Sbjct: 36 AGLFDFGPPGCAFQNNVIDAWRKHFILEEDMLEVEATMLTPHDVLKTSGHVDRFSDWMCK 95


>gi|148998081|ref|ZP_01825594.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|168575992|ref|ZP_02721897.1| histidyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|307068738|ref|YP_003877704.1| histidyl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|147756091|gb|EDK63134.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|183578088|gb|EDT98616.1| histidyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|306410275|gb|ADM85702.1| Histidyl-tRNA synthetase [Streptococcus pneumoniae AP200]
          Length = 429

 Score = 90.2 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 119/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIVMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENK 275
                      +D     +    ++  S+   +++ +  +        E L  D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQTHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I    +       ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVTLPIENALDVYIAVLGEGANIKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFVAKTLITLGESEVESGQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|332364081|gb|EGJ41858.1| histidine--tRNA ligase [Streptococcus sanguinis SK49]
          Length = 426

 Score = 90.2 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 58/402 (14%), Positives = 114/402 (28%), Gaps = 25/402 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
               +     +M     + F  +G+ ++ +   S       +                  
Sbjct: 137 NNPATD---VEMIAMAAQFFKDIGITNVSLELNSLGNPESRAAYRQALIDYLTPLKASLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D   P +    +   S+   +++ ++ Y A      E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESSNYFAAVRSMLETLQIPYVI 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               V         IF F T+ +         A G+   +     G     V   +    
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLT--ICAGGRYDGLVAYFGGPETPGVGFGMGLER 311

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      +       + +            ++   L   G     D +  ++ +QF
Sbjct: 312 LLLVLDKQGVELPIETALDVYVAVLGPGANGRALELVQALRAQGFAAERDYLDRKLKAQF 371

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             AD       + +G   V   +V +K+        +SL+++
Sbjct: 372 KSADTFKAKTLITLGESEVESGQVTVKNNHNREEITVSLDQI 413


>gi|299771616|ref|YP_003733642.1| histidyl-tRNA synthetase [Acinetobacter sp. DR1]
 gi|298701704|gb|ADI92269.1| histidyl-tRNA synthetase [Acinetobacter sp. DR1]
          Length = 430

 Score = 90.2 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/421 (9%), Positives = 115/421 (27%), Gaps = 23/421 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP    A   +   +    +  G  ++ +P ++   L+  +     D   KEM    D+ 
Sbjct: 14  LPTQTVAWRRLEQHLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMYTFFDKG 73

Query: 101 DKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           +         E     +         R      + +   FR E   +    +  +F ++ 
Sbjct: 74  NPPESLTLRPEGTAGCVRALVEHNLLRGATPRVWYMGPMFRYEKPQKGRYRQFHQFGVET 133

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGE 218
                   +             + +  ++ L+ +     +      +    F+       
Sbjct: 134 FGVATPDIDAELIMLTARLWKRMGVADKVQLELNTLGETDERTEYRNALVAFLNEHKDAL 193

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------- 271
            +    +     P+   ++  +    +     +        S  H ++L D L       
Sbjct: 194 DED-SQRRLTTNPLRILDSKIESTQKILENAPKLHDFLKEDSLDHFKQLQDYLTAAGIQF 252

Query: 272 ------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                         + +        G++ ++     + G  G+       S       + 
Sbjct: 253 VINQKLVRGLDYYNKTVFEWTTTALGSQGTVCAGGRYDGLVGQLKGKPDQSVPAVGFAMG 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDD 383
              +    +              +        + +     E++  +L        +    
Sbjct: 313 MERLLLLLEQVEQAEVIRDCEVFLVAEPAYQTNALI--LAEQLRDQLEAANSSIRIKT-G 369

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               + SQ   AD  G    +I+G +     +  IK   T  +  +++ +++ +   +F+
Sbjct: 370 SQGSMKSQMKKADQAGAIFALILGEREWEAQQFAIKELATAEQSQVAIADLVPFLIQKFT 429

Query: 444 N 444
            
Sbjct: 430 K 430


>gi|241662756|ref|YP_002981116.1| histidyl-tRNA synthetase [Ralstonia pickettii 12D]
 gi|240864783|gb|ACS62444.1| histidyl-tRNA synthetase [Ralstonia pickettii 12D]
          Length = 450

 Score = 90.2 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 62/429 (14%), Positives = 109/429 (25%), Gaps = 27/429 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      ++ +  +R      G  ++  P ++   L+V   G   D   KEM  
Sbjct: 27  GMNDLLPADAPLWEHFDNAVRSMLRAYGYQQIRTPIVEQTQLFVRGIGEVTDIVEKEMYT 86

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMR 151
             D  +   +                     + P   +     FR E   R         
Sbjct: 87  FTDALNGEQLTMRPEGTAAAVRAVIEHNLLYDGPKRLWYTGPMFRHERPQRGRYRQFHQV 146

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             E L       D                         L     RA            F 
Sbjct: 147 GVEALGFAGPDIDAEVILMCQRLWDDLGLVGLKLELNSLGQADERAAHRADLIKYLEGFQ 206

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            + D         +     P+   +T    +  + +   +        S  H E +   L
Sbjct: 207 DILDED-----GKRRLYSNPLRVLDTKNPALQDMAAGAPKLIDYLGDESRAHFEGVQKLL 261

Query: 272 PENKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
             N           RG++  ++  F        +       G+   +     G  A    
Sbjct: 262 KANNIPFTINPRLVRGLDYYNLTVFEWTTDKLGAQGTVAGGGRYDPLIEQIGGKPAPACG 321

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW---- 381
            A+                      +  +   D+    A      RL   G DV      
Sbjct: 322 WAMGVERIIELLREEKLEPEAQGCDVYIVHQGDEAQVQALIA-AERLRDAGLDVILHASP 380

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSLEEVINY 437
           +       SQF  AD  G    VI+G   V+    +IK          ++ +  +++++ 
Sbjct: 381 EGRNGSFKSQFKRADASGASYAVIIGDDEVTQGVAQIKPLRGDPAADAQQTVPSDQLVDR 440

Query: 438 ASH-RFSNN 445
                 +NN
Sbjct: 441 LIDALVANN 449


>gi|328943939|ref|ZP_08241404.1| histidyl-tRNA synthetase [Atopobium vaginae DSM 15829]
 gi|327491908|gb|EGF23682.1| histidyl-tRNA synthetase [Atopobium vaginae DSM 15829]
          Length = 439

 Score = 90.2 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 84/326 (25%), Gaps = 18/326 (5%)

Query: 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHR 187
           P   +  +  FR E   +    R R+F              +       +   Y R+   
Sbjct: 120 PLKVWYGEAMFRGERPQKG---RLRQFHQIGCEWLGADDPCADAECIMMLMEFYTRMGFE 176

Query: 188 LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
                + + +           E +           C        I             + 
Sbjct: 177 PNQLVLHINSMGDQACRPAYRESVRAFIKDHQDQMCPDCLERATINPLRAFDCKNEHCHE 236

Query: 248 IV-----------EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
           I+            +    Y       +E     + +   V         +F      + 
Sbjct: 237 IMSDAPLAKDNLCAECKTHYERVKAFLDEAHVAYVEDPTLVRGLDYYTRTVFEIECPQAH 296

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             S    G       ++ G    G      A+           +         + + +  
Sbjct: 297 VGSIGGGGRYDGLVELEGGRPTCGLG---WALGFERMILALQTFGTQPWKTTPACVYVAF 353

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                R     + A+L + G     +  G  + SQF  AD LG  L V++G     +  V
Sbjct: 354 TSDAERMYAFNVCAQLRQAGIRTESNYQGRSLKSQFKQADKLGARLCVVIGEHETQNQSV 413

Query: 417 EIKHRLTGIREDMSLEEVINYASHRF 442
            ++   T  + ++ L  +++  + + 
Sbjct: 414 TVRDMQTHEQTEIQLTNLVSQLTAKL 439


>gi|227524426|ref|ZP_03954475.1| histidyl-tRNA synthetase [Lactobacillus hilgardii ATCC 8290]
 gi|227088385|gb|EEI23697.1| histidyl-tRNA synthetase [Lactobacillus hilgardii ATCC 8290]
          Length = 430

 Score = 89.8 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 56/424 (13%), Positives = 109/424 (25%), Gaps = 20/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP   +    V    R   N     E+  P  ++ D++  +     D   KEM  
Sbjct: 8   GTADILPEEARKWTYVEETARMLFNDYRYQEIRTPMFENFDVFSRTSGDTSDVVTKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   F  +         P   + +   FR E        R R
Sbjct: 68  FKDKGDRHISLRPEGTAGVVRAFVENKLYGPEHQRPVKVFYMGSMFRYERPQSG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEF 210
           EF       F                        +     I    +  S         ++
Sbjct: 125 EFHQIGVEDFGSDEPELDVEVIAMGMDLLHHFGLKDIRLEINSLGDAASRAAYRQALIDY 184

Query: 211 IVLADTGETQVFCSKDFMDFPI--------PSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           +      E            P+          +    D    L+ + +     +     +
Sbjct: 185 LDPH-FDELSKDSQVRLHKNPLRVLDSKDKQDQEIVKDAPSILDYLNDDSKKHFERVKKL 243

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +      + +   V         IF       +L    T   A G+ + +     G   
Sbjct: 244 LDTLHIPYVIDPDMVRGLDYYTHTIFEIMVDSKALGEGYTTICAGGRYNGLVEQLGGPEM 303

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
             +   +                         +    +       KI   L   G     
Sbjct: 304 PGIGFGLGMERLMLLMDAQGVKFPVLDQLDAYVVGIGEQTSIETLKIVQALRANGFAADR 363

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D +  +  +QF  AD L     + +G   +      +K   +G   ++ ++++IN     
Sbjct: 364 DYLNRKPKAQFKSADKLNAQYTITIGESELESHTANVKSMASGKEINVPIDKIINDFDEI 423

Query: 442 FSNN 445
            ++N
Sbjct: 424 ITSN 427


>gi|145638722|ref|ZP_01794331.1| histidyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|145272317|gb|EDK12225.1| histidyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|309750212|gb|ADO80196.1| Histidyl-tRNA synthetase [Haemophilus influenzae R2866]
          Length = 423

 Score = 89.8 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 68/412 (16%), Positives = 130/412 (31%), Gaps = 27/412 (6%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y     FR E   +    +  +  ++     +  
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWYI-GPMFRHERPQKGRYRQFHQVGVEVFGIANPE 138

Query: 167 PEGSKHSYNKMFVSYLRIFHR-------LGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +             L I          +G         S  +G   +H+ ++  +  E 
Sbjct: 139 IDAELIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLENHQDLMNDEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVS 278
            V      +D   P      D+   L   ++  + A +     + +          K V 
Sbjct: 199 LVRNPLRILDTKNPELQKVLDNAPKLLDYLDDESRAHFEQLCSLLDAVGIQYEINPKLVR 258

Query: 279 ARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   +F       G + ++     + G       H      + +G  R+V  V E 
Sbjct: 259 GLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAMGLERLVLLVQEV 318

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           + +       D    ++     +        +  EK+ + L     +      G     Q
Sbjct: 319 NPNIPVKSAVDIYVVYQGEGATL-----AAFELAEKVRSELP--HLNTMLHCSGGNFKKQ 371

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
           F  AD  G  L +++G   V + +V +KH   G  ++ + L  +I+Y   +F
Sbjct: 372 FKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVNIIDYLQTQF 423


>gi|284801910|ref|YP_003413775.1| histidyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284995052|ref|YP_003416820.1| histidyl-tRNA synthetase [Listeria monocytogenes 08-5923]
 gi|290893879|ref|ZP_06556857.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
 gi|284057472|gb|ADB68413.1| histidyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284060519|gb|ADB71458.1| histidyl-tRNA synthetase [Listeria monocytogenes 08-5923]
 gi|290556596|gb|EFD90132.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
          Length = 425

 Score = 89.8 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 57/422 (13%), Positives = 113/422 (26%), Gaps = 30/422 (7%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            +    +         E+  P  +  +L+        D   KE
Sbjct: 5   LPRGTRDILPEEVSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKE 64

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +   F  H      + P   Y  +  FR E        R
Sbjct: 65  MYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGG---R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF- 210
            R+F      +                   +  F ++GL +I +   S            
Sbjct: 122 QRQFTQMGIEALGSDDPSIDVEV---ISLAMTFFKKIGLTNIKLVINSLGDKESRLKHRE 178

Query: 211 ----IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E    C       P+   +   D    L              S  + E 
Sbjct: 179 ALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFEN 238

Query: 267 LFDSLP------ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           + + L       E      RG++      F   +      + T     G+ H +     G
Sbjct: 239 VKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGG 298

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                +   +               +   K   + +             +  +L + G  
Sbjct: 299 PDTPGMGFGIGVERILLALEKADIEIPAKKPLEVYVITAQPEAELKAVTLVNKLRQNGIS 358

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              D +  +  +Q   A+       +I+G + +     ++K+  TG +E +S   ++   
Sbjct: 359 AEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEAVSETTILEKL 418

Query: 439 SH 440
           S+
Sbjct: 419 SN 420


>gi|152979678|ref|YP_001345307.1| histidyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
 gi|171704494|sp|A6VQX5|SYH_ACTSZ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|150841401|gb|ABR75372.1| histidyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
          Length = 423

 Score = 89.8 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 126/412 (30%), Gaps = 33/412 (8%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               +   +R      G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEDKVRNVLASYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            +   Y N    +Y +   FR E   +    R R+F       F + 
Sbjct: 80  RPEGTAGCVRAAIENGWIYNNEQRLWY-MGPMFRHERPQKG---RYRQFHQAGVEIFGIA 135

Query: 167 PEGSKHSYNK----------MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                               +        + +G  +      +  +    +H+ ++  + 
Sbjct: 136 NPEIDAELIILTARLWKELGIEQHVSLQLNSIGSLAARAGYRTALVAFLENHQALMSDEE 195

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT----APYAATSDVHNEK--LFDS 270
            E  +      +D    +     +D   L   ++  +        A  D    +  +   
Sbjct: 196 KERLLKNPLRILDTKNEALQEVLNDAPKLLDYLDDESRQHFTQLCALLDNMGVQYEINPK 255

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAV 328
           L        + +        G + ++     + G       H  Q   + +G  R+V  V
Sbjct: 256 LVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATQGVGFAMGLERLVLLV 315

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E + +       D    F      +           EKI + L      V     G + 
Sbjct: 316 QEVNKNISVPNAVDIYVVFSGEGTTL-----AAFQTAEKIRSELP--HLRVMTHCSGGKF 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYAS 439
             QF  AD LG  L +++G   V   +V +K       ++ +S+ E+I+Y  
Sbjct: 369 QKQFKRADKLGAKLALVIGESEVQTDRVVVKDLSGAVEQQTISVVELIDYLK 420


>gi|257462975|ref|ZP_05627379.1| histidyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|317060592|ref|ZP_07925077.1| histidyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|313686268|gb|EFS23103.1| histidyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 413

 Score = 89.8 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 58/406 (14%), Positives = 123/406 (30%), Gaps = 32/406 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            + ++ I ++     G   +  P  +  DL+        D   KEM    DR ++++   
Sbjct: 21  YNYISDISKQVFESYGCQFIKTPIFEETDLFKRGIGEATDVVEKEMYTFKDRGNRSITLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLT 166
           P +   +   +  +    +     FY     FR E        R REF         + +
Sbjct: 81  PENTASVVRSYLENAIYAKEDVSRFYYNGSMFRYERPQAG---RQREFNQIGVEVLGEKS 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCS 224
           P          +    R+        I       S         E+       E    C 
Sbjct: 138 PILDAEIIAMGYKLLQRLGITDLEVRINCIGSNASRTEYRKKLLEYFKPM-KEELCEDCK 196

Query: 225 KDFMDFPIPSENTDFDDIIS------LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                 P+   +   D          ++S+ E+  A Y A            + +   V 
Sbjct: 197 NRLERNPLRVLDCKIDHAKMENAPSIIDSLFEEERAHYEAVKKYLTIFGIPFVEDPGLVR 256

Query: 279 ARGIEVGHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                   +F       G++ ++     +     +     + ++G  +      ++    
Sbjct: 257 GLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKQLGDKDIPAFGFASGVERIMMLL--- 313

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                       P K + + +    +   +   +I A L +    V  D   + + S   
Sbjct: 314 ---------EEYPKKSTDVYLAWLGENTLEKAMEITALLRENNTKVSVDYHSKGMKSHMK 364

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            AD L     +I+G   ++ + V +K+  T  +E++S+E ++    
Sbjct: 365 KADKLNTKYCIILGEDELAKNVVILKNFETREQEEISMENIVRAIK 410


>gi|147921754|ref|YP_684424.1| histidyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
 gi|110619820|emb|CAJ35098.1| histidyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
          Length = 433

 Score = 89.8 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 66/437 (15%), Positives = 134/437 (30%), Gaps = 52/437 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   + P    A   V   I     R G  E+  P+++S DL+  +SG  +   ++    
Sbjct: 11  GFRDFYPEEMAARREVLDKIFNVVRRYGFREVDSPSVESMDLFRIKSG--EEIVQQTFSF 68

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+ ++ +   P     +  +     K+ R  P  ++ +   +R E        R REF 
Sbjct: 69  KDKGEREITLIPELTPTIARMVVDREKTLRR-PIKWFSMPKMWRYEEPQSG---RLREFY 124

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +   + +    +      + +  +      G     +   S       + E + + + 
Sbjct: 125 QLNVDIYGVKGPEADAEVLAVGIDLMLKLGLEGEFVFKI---SDRRFMQGALEGLGVTEV 181

Query: 217 GETQVFCSKD----------------FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           G       K                   DF +       D    +   + +  A  A   
Sbjct: 182 GPVFAAIDKRGKISPEEFKQLLATAGLNDFQMGKLIAILDTKGPITEALPKVKALLARND 241

Query: 261 -------------DVHNEKLFDSLPENKRVSARGI--EVGHIFYF----GTKYSLPMSAT 301
                        ++          E      RG+    G +F      G   ++     
Sbjct: 242 TVVEGMTNLEKLAELMTMYNMAQYCEFDPAIIRGLAYYTGTVFECFDVKGELRAVFGGGR 301

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +    G      M + G G    V  ++      +  +WP         ++  K   +  
Sbjct: 302 YDKIVGLFGGEDMPAVGFGMGDAVLEILM----RRAGVWPQESITTDYYILTTKPQFKET 357

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                 +   L +    V  D  G   G+Q   A+ +G    +I+G K +++ KV +K+ 
Sbjct: 358 ETF---LAQALRENNFVVEVDLQGRNFGNQMKYANAIGARHVLILGDKEMAEGKVTVKNM 414

Query: 422 LTGIREDMSLEEVINYA 438
            TG +    + E ++  
Sbjct: 415 ETGEQVMKEIREFLSSV 431


>gi|309782320|ref|ZP_07677047.1| histidine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918938|gb|EFP64608.1| histidine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
          Length = 450

 Score = 89.8 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 62/429 (14%), Positives = 109/429 (25%), Gaps = 27/429 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      ++ +  +R      G  ++  P ++   L+V   G   D   KEM  
Sbjct: 27  GMNDLLPADAPLWEHFDNAVRSMLRAYGYQQIRTPIVEQTQLFVRGIGEVTDIVEKEMYT 86

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMR 151
             D  +   +                     + P   +     FR E   R         
Sbjct: 87  FTDALNGEQLTMRPEGTAAAVRAVIEHNLLYDGPKRLWYTGPMFRHERPQRGRYRQFHQV 146

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             E L       D                         L     RA            F 
Sbjct: 147 GVEALGFAGPDIDAEVILMCQRLWDDLGLVGLKLELNSLGQAEERAAHRADLIKYLEGFQ 206

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            + D         +     P+   +T    +  + +   +        S  H E +   L
Sbjct: 207 DILDED-----GKRRLYSNPLRVLDTKNPALQDMAAGAPKLIDYLGDESRAHFEGVQKLL 261

Query: 272 PENKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
             N           RG++  ++  F        +       G+   +     G  A    
Sbjct: 262 KANNIPFTINPRLVRGLDYYNLTVFEWTTDKLGAQGTVAGGGRYDPLIEQIGGKPAPACG 321

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW---- 381
            A+                      +  +   D+    A      RL   G DV      
Sbjct: 322 WAMGVERIIELLREEKLEPEAQGCDVYIVHQGDEAQVQALIA-AERLRDAGLDVILHASP 380

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSLEEVINY 437
           +       SQF  AD  G    VI+G   V+    +IK          ++ +  +++++ 
Sbjct: 381 EGRNGSFKSQFKRADASGASYAVIIGDDEVTQGVAQIKPLRGDPTADAQQTVPSDQLVDR 440

Query: 438 ASH-RFSNN 445
                 +NN
Sbjct: 441 LIDALVANN 449


>gi|257784208|ref|YP_003179425.1| histidyl-tRNA synthetase [Atopobium parvulum DSM 20469]
 gi|257472715|gb|ACV50834.1| histidyl-tRNA synthetase [Atopobium parvulum DSM 20469]
          Length = 436

 Score = 89.8 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 53/425 (12%), Positives = 106/425 (24%), Gaps = 35/425 (8%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV----ESGRYDSYGKEMLRLADRNDK 102
            ++ +++  + R      G   +  P L+  D +V    ES   D   KEM R+      
Sbjct: 16  MRSWEHMQDVARHLFGTYGFDRIETPALEQVDTFVHGIGES--TDVVRKEMFRVFSGALL 73

Query: 103 AMIYGPTHEEVMTDIFRSHIKSY-----------RNLPFTFYQIQLKFRDELR---PRFG 148
             +    +E  +    R  ++              N           +  E      R  
Sbjct: 74  DDLLAAGNESGLKPRQRMAMRPEGTAGVVRAAVEHNFVPQGGTPAKLWYAEAMFRGERPQ 133

Query: 149 VMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
             R R+F            P     S   +   Y ++        + + +          
Sbjct: 134 KGRLRQFHQVGVEWLGASDPAADAESIIMLMKFYEQMGFSPANMKLMINSMGDAECRPAY 193

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-----------NSIVEQWTAPY 256
            E +           C        I                        +++ +     Y
Sbjct: 194 REKVKQFILDHKDQMCEDCLERAEINPLRAFDCKNEGCHAVMKDAPLISDNLCDDCRTHY 253

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                  +      + +   V         +F      +   +    G       ++ G 
Sbjct: 254 EQVKAYLDAAGILYIEDPTLVRGLDYYTRTVFEVEIPNAGVGAIGGGGRYDGLVELEGGK 313

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
              G      AV              S  P   S + +                 L + G
Sbjct: 314 PTPGVG---FAVGFERIMLALEALGVSAEPAAPSCVYVACAGAEQAPVVFDAVLALREAG 370

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                D  G  + +QF  AD +G  L V++G   V    V ++   +  +  +  ++++ 
Sbjct: 371 IRCEADRTGRSLKAQFKQADKMGAALCVVIGPDEVEAGVVTLRDMESHEQVQVPSDQLVA 430

Query: 437 YASHR 441
               R
Sbjct: 431 EVKAR 435


>gi|297818950|ref|XP_002877358.1| hypothetical protein ARALYDRAFT_323159 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323196|gb|EFH53617.1| hypothetical protein ARALYDRAFT_323159 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 673

 Score = 89.8 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 89/283 (31%), Gaps = 18/283 (6%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                     +         +     +            A S   G  L  E  +     
Sbjct: 384 LANEMAHYAADCWDAEIESSYGWIECVGIADRSAFDLC-AHSEKSGVPLVAEEKLAEPKE 442

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             ++  +    +  +  +    + + SL ++ E       AT +   E  F      K V
Sbjct: 443 VEKLVITPVKKELGLAFKGNQKNVVESLEAMNEDEAMQMKATLESKGEVEFYVCTLEKNV 502

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           S +            K  + +S   K    +     +     G  R++            
Sbjct: 503 SIK------------KNMVSISQKKKKEHQRVFTPSVIEPSFGIGRIIYCFKTGDEQLNV 550

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
             +P  VAP K ++  +  + Q   +A + I   L+ VG     D  G  IG ++A  D 
Sbjct: 551 FRFPPLVAPIKCTVFPLVQN-QQFEEAAKVISKELASVGISHKIDITGTSIGKRYARTDE 609

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           LG PL + V S       V I+ R +  +  +SLEE  +  S 
Sbjct: 610 LGVPLAITVDSDT----SVTIRERDSKDQVRVSLEEAASVVSS 648



 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G++ + P G     NV +  R+        +E+  P +    +   SG  D +   M++
Sbjct: 95  AGLFDYGPPGCAVKSNVLSFWRQHFILEENMLEVDCPCVTPEIVLKASGHVDKFTDLMVK 154

Query: 96  LADRNDKAMIYGPTHEEVM 114
             ++           ++  
Sbjct: 155 D-EKTGTCYRADHLLKDYC 172


>gi|254169125|ref|ZP_04875962.1| histidyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197621964|gb|EDY34542.1| histidyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 405

 Score = 89.8 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 60/412 (14%), Positives = 130/412 (31%), Gaps = 36/412 (8%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMIY 106
              D + ++ R      G  E+  P+++  DL+  +SG  +   K+     D+  + +  
Sbjct: 11  IVFDKICSVAR----SFGFHEVDTPSVELLDLFRIKSG--EEIVKQTFSFVDKGGREITL 64

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     ++ +     +     P  ++     +R E        R REF   +A  F + 
Sbjct: 65  IPELTPSVSRMIA--ARKDLVKPVKWFSFPKMWRYEEPQSG---RLREFYQFNADIFGVA 119

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFIVLA-------DTG 217
              +      + +  L      G   +    R     +   L  E I  A       D  
Sbjct: 120 NITADAEVMALAMEILDSLGLKGKYVMKFSDRILMEELLRSLDIEKIEEAFRIIDKKDKI 179

Query: 218 ETQVFCSKDFM---DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
             + F  +      +  + S  +      ++++++ ++     +      + L  +  + 
Sbjct: 180 PEERFYEEMLKITREENVDSLISLLKLSGNVDTVLSKFEHFERSEILASLKDLLKAYGKT 239

Query: 275 ---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG---SYGIGAMRVVAAV 328
                   RG+       F    +        G    D  V++            +  AV
Sbjct: 240 ATLDLSIVRGLAYYTGVVFEVHDAKGEFRAVLGGGRYDRVVELFGAQPTPAVGFGMGDAV 299

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E     +G+   + +       I      +       +I   L + G  V  D     I
Sbjct: 300 LELLMRREGVWPDERIEVDYFIAIIPGFRKE-----AIEIAMELRRSGYVVDIDLSERSI 354

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G Q   A  +     +IVG   + + +V +K   +G + ++ +EE+      
Sbjct: 355 GKQLKYAHRINAKYTIIVGE-EIKNGEVALKDMESGEQRNVKIEELKEVIEK 405


>gi|304437075|ref|ZP_07397038.1| histidine--tRNA ligase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370026|gb|EFM23688.1| histidine--tRNA ligase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 421

 Score = 89.8 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 56/409 (13%), Positives = 114/409 (27%), Gaps = 9/409 (2%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP    A  +V  +IR+   R G  E+  P  +  +L+        D   KEM   +DR 
Sbjct: 13  LPDAVGAWTHVEHVIRDLCARYGYGEIRTPIFEHTELFQRGIGDGTDVVDKEMYTFSDRG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+++   P +       +  +           + I   FR +      +    +F ++  
Sbjct: 73  DRSLTLRPENTASAVRAYLQNKLYADGGLQKLFYIGSMFRYDRPQAGRMREFHQFGVEAL 132

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
                  +         F++ L +       +        P+  +    +          
Sbjct: 133 GEESPALDAEVILLAYDFLTVLGLTGLTLKLNSVGCPACRPVYRERLQAYFKEYLPTLCD 192

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------EN 274
             C   +   P+   +   D      +     T         H E++   L       E 
Sbjct: 193 D-CKDRYTRSPLRILDCKRDAEQPFMTGAPAITDCLCPACTEHFEQVQQHLTAAGVSYEL 251

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                RG++      F   Y    + +     G+   +     G     V  A       
Sbjct: 252 DPRLVRGLDYYTRTAFEIAYPPLGAQSAVAGGGRYDGLVEELGGNPTPAVGFAAGLERVL 311

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                          + + + A       A   +   L   G     D  G  + +Q   
Sbjct: 312 LALEQQNLLPVQPPAADVFLIALGDAAAKAAFPLLHELRHGGVRALMDYAGRSMKAQMKQ 371

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           A+  G    VI+G   ++     ++      +E  +L++++        
Sbjct: 372 ANRSGARYAVILGEDELAAHTALVRDMAESAQETCALDDLVEKMISEVK 420


>gi|167856483|ref|ZP_02479199.1| histidyl-tRNA synthetase [Haemophilus parasuis 29755]
 gi|167852392|gb|EDS23690.1| histidyl-tRNA synthetase [Haemophilus parasuis 29755]
          Length = 429

 Score = 89.8 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 61/431 (14%), Positives = 118/431 (27%), Gaps = 36/431 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+    P        V + IR+     G  EM  P ++S DL+        D   KEM  
Sbjct: 10  GMNDLSPTETPLWQWVESNIRDIFASYGYTEMRSPIMESTDLFKRGVGEATDIVEKEMFT 69

Query: 96  LA--DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
               +   ++    P            H   Y      +Y     FR E   +    R R
Sbjct: 70  FTRSEEAGESFTLRPEGTAGCVRAAIEHGWIYNQEQRLWYI-GPMFRYERPQKG---RYR 125

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +F       F +    +      +              ++ + +  G        E +V 
Sbjct: 126 QFHQAGVEIFGIPNAEADAELIVLTARLWEKLGIREHVTLQLNSIGGLEVRTRYREALVA 185

Query: 214 ADTGETQVFCSKD------------FMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATS 260
                  V                  +D    +     +D   L+  ++    A +A   
Sbjct: 186 FLQNHLDVLKQDPDSERRLTTNPLRILDTKNQALQAVLNDAPKLHDFLDDESKAHFARLC 245

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMG 315
            + +E         K V         +F       G + ++     + G   +       
Sbjct: 246 AILDEMGIAYEVNQKLVRGLDYYNKTVFEWVTTALGAQGTVCGGGRYDGLVAQLGGHATE 305

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
             G         ++             +V   +   I +    +       ++   L   
Sbjct: 306 GVGFAMGLERLVLLV-------QEVNPNVQLPRAVDIYVVHSGEGTTAVAFRLAETLRNA 358

Query: 376 --GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLE 432
                      G     QF  AD  G  + +++G   V++ KV +K       +  ++  
Sbjct: 359 FPQLRTMLHTSGGNFKKQFKRADKSGAKIALVLGESEVAEQKVVVKDLFGEAEQMTIAQA 418

Query: 433 EVINYASHRFS 443
           ++IN  + RF+
Sbjct: 419 DLINELTTRFA 429


>gi|160885408|ref|ZP_02066411.1| hypothetical protein BACOVA_03408 [Bacteroides ovatus ATCC 8483]
 gi|237715422|ref|ZP_04545903.1| glycyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262405264|ref|ZP_06081814.1| glycyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|293370597|ref|ZP_06617149.1| glycine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|294644763|ref|ZP_06722508.1| glycine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294810581|ref|ZP_06769233.1| glycine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|298481641|ref|ZP_06999832.1| glycine--tRNA ligase [Bacteroides sp. D22]
 gi|299147277|ref|ZP_07040342.1| glycine--tRNA ligase [Bacteroides sp. 3_1_23]
 gi|156109030|gb|EDO10775.1| hypothetical protein BACOVA_03408 [Bacteroides ovatus ATCC 8483]
 gi|229444731|gb|EEO50522.1| glycyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262356139|gb|EEZ05229.1| glycyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|292634331|gb|EFF52868.1| glycine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|292639885|gb|EFF58158.1| glycine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294442242|gb|EFG11057.1| glycine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|295086409|emb|CBK67932.1| glycyl-tRNA synthetase [Bacteroides xylanisolvens XB1A]
 gi|298272182|gb|EFI13752.1| glycine--tRNA ligase [Bacteroides sp. D22]
 gi|298514555|gb|EFI38439.1| glycine--tRNA ligase [Bacteroides sp. 3_1_23]
          Length = 513

 Score = 89.8 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 69/395 (17%), Positives = 128/395 (32%), Gaps = 57/395 (14%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD-SYGKEMLRLADRNDKAMIYGP 108
           L+ +  II +E       E+  P +     W E  +++  +  EM   ++   K  +   
Sbjct: 166 LEELRQIIIDE-------EIVCP-ISGTKNWTEVRQFNLMFSTEMGSTSEGAMKIYLRPE 217

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
           T + +  +           +PF   QI   FR+E+  R  + R REF   +   F   P 
Sbjct: 218 TAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQFIFRMREFEQMEMQFFVK-PG 276

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                + K     L+    LG      R         L+H      D      F  K   
Sbjct: 277 TELDWFKKWKEIRLKWHKALGFGDASYRYHD---HDKLAHYANAATDIEFLMPFGFK--- 330

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                 E         L+   +             NE     + E      R        
Sbjct: 331 ----EVEGIHSRTNFDLSQHEKFSGKSIKYFDPELNESYTPYVIETSIGVDR-------- 378

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                +   MSA++                          +E+      +  P ++AP K
Sbjct: 379 ----MFLSIMSASYCEE----------------------QLENGESRVVLKLPAALAPVK 412

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++++ +   D    +   ++   L        +D+    IG ++   D +G P  V V  
Sbjct: 413 LAVMPLVKKD-GLPEKAREVIDSLK-FHFHCQYDEKD-SIGKRYRRQDAIGTPYCVTVDH 469

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + + D+ V +++R T  +E +++ E+ N  + R S
Sbjct: 470 QTLEDNCVTLRNRDTMQQERVAISELNNIIADRVS 504


>gi|121712626|ref|XP_001273924.1| glycyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
 gi|119402077|gb|EAW12498.1| glycyl-tRNA synthetase [Aspergillus clavatus NRRL 1]
          Length = 699

 Score = 89.8 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/312 (12%), Positives = 91/312 (29%), Gaps = 25/312 (8%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
              +   +     K   +   + + +              ++         E +  AD  
Sbjct: 372 LGYFIARIQSFLYKLGVDPSKLRFRQHMANEMAHYAADCWDAELQTSYGWIECVGCADRS 431

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP----- 272
              +   K+    P+       + +      V+     +        + +  ++      
Sbjct: 432 AYDLTVHKNKTGAPLVVREPRAEPLRIEEWQVDLDKKKFGPRFKKDGKAVAAAVEALSQE 491

Query: 273 -ENKR-----------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
              K            V   G+  G +             T    + +++   +     G
Sbjct: 492 FREKLAIDLEKNGKIEVEVEGVGSGKV-ELDQDIVKIEKRTRV-ENIREYTPNVIEPSFG 549

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSK 374
             R++ ++IE  +  +       V  F   +   K      +     R   +++  +L +
Sbjct: 550 IGRILYSMIEHVYWSREGDEARGVLSFPPVIAPTKVLIVPLSTHASFRPLLQQLMTKLRR 609

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +G     DD    IG ++A  D LG P  + V  + V D+   ++ R T  +   S EE+
Sbjct: 610 LGVSNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTLRDRDTTKQVRASEEEI 669

Query: 435 INYASHRFSNNR 446
           +          +
Sbjct: 670 LQAIKSLVDGEK 681



 Score = 54.0 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G   L+N+  + R+        +EM    L   ++   SG  D +   M +
Sbjct: 81  SGLYDYGPPGTALLNNIVDVWRKHFVLEEDMLEMDCTMLTPHEILKTSGHVDKFADWMCK 140


>gi|145532881|ref|XP_001452193.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419876|emb|CAK84796.1| unnamed protein product [Paramecium tetraurelia]
          Length = 428

 Score = 89.8 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 7   FLPILQE-NPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           ++ I +E   RD      K  L   + HQ S G   + P G    + +   +R +    G
Sbjct: 318 YVKIQKELALRDHRNVGKKQNLY--LFHQLSPGSAFFYPSGAHIYNTLMNFLRRQYYIRG 375

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGP 108
             E+  P + +A LW  SG YD Y + +  +    +  +    
Sbjct: 376 YQEVISPNIFNAQLWKISGHYDKYKENLFFINMGEEGRIWIKT 418


>gi|113868337|ref|YP_726826.1| histidyl-tRNA synthetase [Ralstonia eutropha H16]
 gi|123032872|sp|Q0K963|SYH_RALEH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|113527113|emb|CAJ93458.1| Histidyl-tRNA synthetase [Ralstonia eutropha H16]
          Length = 456

 Score = 89.8 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 117/427 (27%), Gaps = 31/427 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      ++     R      G  ++  P ++   L+V   G   D   KEM  
Sbjct: 30  GMNDMLPADAPLWEHFENAARAMLRAYGYQQIRTPIVEHTQLFVRGIGEVTDIVEKEMYS 89

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   +     FR E   R    R R+F
Sbjct: 90  FTDSLNGEQLTLRPEGTAAAVRATIEHNLLYDGPKRLWYTGPMFRHERPQRG---RYRQF 146

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
               A +              M       +  LGL  + +   S           E ++ 
Sbjct: 147 HQLGAEALGFAGPDVDAEIILMCQRL---WDDLGLVGVRLELNSLGQAHERAAHREQLIK 203

Query: 214 ADTGETQVF---CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              G   +      +     P+   +T    +  + +   +        S  H E +   
Sbjct: 204 YLEGFQDILDDDSKRRLYTNPLRVLDTKNPALQEMAANAPKLIDFLGEESLAHFEGVQRL 263

Query: 271 LPENKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           L  N           RG++  ++  F       + A    A G  +   +   G      
Sbjct: 264 LKANNIPFKINPRLVRGLDYYNLTVFEWITDK-LGAQGTIAGGGRYDPLIAQMGGKPAPA 322

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW--- 381
               +      + I     V       + +    +           RL   G DV     
Sbjct: 323 CGWAMGIERIIELIREEGVVPDAAGCDVYLVHQGEAAAQQAMIAAERLRDAGLDVVLHAS 382

Query: 382 -DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV---EIKHR----LTGIREDMSLEE 433
            D  G    SQ   AD  G    VI+G   V+   V   E++ R      G +  +  E 
Sbjct: 383 PDGKGGSFKSQMKRADTSGAAYAVIIGDDEVAAGVVQVKELRQREQAEGGGQQATVPAEG 442

Query: 434 VINYASH 440
           +++Y   
Sbjct: 443 LVDYLID 449


>gi|328869633|gb|EGG18010.1| glycyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 683

 Score = 89.8 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 36/87 (41%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +      ++I   L + G     D+ G  IG ++A  D +G P  + +    V D  V 
Sbjct: 581 SEALAPFVQQITRLLKEQGISSKVDESGVAIGRRYARTDEIGIPFAITIDFTTVEDQTVT 640

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           ++ R T I+  + L++V         N
Sbjct: 641 LRERDTMIQVRVPLQQVATTIKQLSEN 667



 Score = 51.7 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 43/161 (26%), Gaps = 14/161 (8%)

Query: 25  LMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSA 77
           LM R   I           G+Y + P G     N+  + R+        +E+   +L   
Sbjct: 70  LMKRRFFITPAFEIYGGVAGLYDYGPPGCAIKANLINLWRQHFVINEDMLEVDCTSLTPE 129

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
            +   SG    +   M++  +   +        E+ +  +      +        +    
Sbjct: 130 VVLKTSGHVAKFADFMVKD-EITKQCYRADHLLEQHIDKLLEDKKITAERKEELTHVRAK 188

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
                    +G  +  E L K       T       Y    
Sbjct: 189 ------AGDYGQSQLTEALKKYGVKCPDTGNAITEPYPFNL 223


>gi|227513282|ref|ZP_03943331.1| histidyl-tRNA synthetase [Lactobacillus buchneri ATCC 11577]
 gi|227083483|gb|EEI18795.1| histidyl-tRNA synthetase [Lactobacillus buchneri ATCC 11577]
          Length = 430

 Score = 89.8 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 56/424 (13%), Positives = 110/424 (25%), Gaps = 20/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP   +    V    R   N     E+  P  ++ D++  +     D   KEM  
Sbjct: 8   GTADILPEEARKWTYVEETARMLFNDYRYQEIRTPMFENFDVFSRTSGDTSDVVTKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   F  +         P   + +   FR E        R R
Sbjct: 68  FKDKGDRHISLRPEGTAGVVRAFVENKLYGPEHQRPVKVFYMGSMFRYERPQSG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEF 210
           EF      +F                        +     I    +  S         ++
Sbjct: 125 EFHQIGVEAFGSDEPELDVEVIAMGMDLLHHFGLKDIRLEINSLGDAASRAAYRQALIDY 184

Query: 211 IVLADTGETQVFCSKDFMDFPI--------PSENTDFDDIISLNSIVEQWTAPYAATSDV 262
           +      E            P+          +    D    L+ + +     +     +
Sbjct: 185 LDPH-FDELSKDSQVRLHKNPLRVLDSKDKQDQEIVKDAPSILDYLNDDSKKHFERVKKL 243

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +      + +   V         IF       +L    T   A G+ + +     G   
Sbjct: 244 LDTLHIPYVIDPDMVRGLDYYTHTIFEIMVDSKALGEGYTTICAGGRYNGLVEQLGGPEM 303

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
             +   +                         +    +       KI   L   G     
Sbjct: 304 PGIGFGLGMERLMLLMDAQGVKFPVLDQLDAYVVGIGEQTSIETLKIVQALRANGFAADR 363

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D +  +  +QF  AD L     + +G   +      +K   +G   ++ ++++IN     
Sbjct: 364 DYLNRKPKAQFKSADKLNAQYTITIGESELESHTANVKSMASGKEINVPIDKIINDFDEI 423

Query: 442 FSNN 445
            ++N
Sbjct: 424 ITSN 427


>gi|270291329|ref|ZP_06197551.1| histidyl-tRNA synthetase [Pediococcus acidilactici 7_4]
 gi|270280175|gb|EFA26011.1| histidyl-tRNA synthetase [Pediococcus acidilactici 7_4]
          Length = 424

 Score = 89.8 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 63/418 (15%), Positives = 118/418 (28%), Gaps = 13/418 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP   K    V    RE        E+  P  +  +++  S     D   KEM  
Sbjct: 8   GTADILPPYSKEWQFVEQKARETFALYNYEEIRTPMFEKFEVFSRSAGDTSDIVTKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRP----RFGV 149
             D+  + +   P     +   F  +         P   Y +   FR E       R   
Sbjct: 68  FDDKGGRHIALRPEGTAGVVRAFVENKLYGPEHQKPVKVYYMGPMFRYERPQSGRLREFH 127

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY--LRIFHRLGLKSIPMRAESGPIGGDLS 207
               E    D+   D+        +           + + LG ++   +     I     
Sbjct: 128 QIGVEAFGSDSPKIDVDTITMAMDFLSQLKVAGLKLVINTLGDQASRQQYRQALIDYLEP 187

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEK 266
           H   +  D+ E         +D    ++     D  S+ + + E     +A   +  +  
Sbjct: 188 HYDELSDDSKERLHKNPLRVLDSKDATDQEIVKDAPSILDYLTEDAQKHFAQVKEQLDAL 247

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-KGADGKDHYVQMGSYGIGAMRVV 325
               + ++  V         IF      S          A G+ + +     G     V 
Sbjct: 248 EIPYVVDSSMVRGLDYYNHTIFEIMVADSALGKGDVTICAGGRYNGLVQELGGPEVSGVG 307

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +              +          +    +  +    KI   L K+      D + 
Sbjct: 308 FGLGVERLLLLLNEQTQAALQASRLDFYVVGIGEAVQTETLKIVHELRKMNFVTEQDYLE 367

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +  +QF  AD L     + VG   +     ++K   TG  + +SL+E+ +   +   
Sbjct: 368 RKPKAQFKSADKLNARYVITVGEAEMQAHVFKLKEMATGTEKTLSLDELKD-IKNDLK 424


>gi|188994073|ref|YP_001928325.1| glycyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
 gi|188593753|dbj|BAG32728.1| glycyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
          Length = 515

 Score = 89.8 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 112/355 (31%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   AD   K  +   T + +  +           +PF   QI   FR+E+  R  
Sbjct: 199 FATEMGSTADGAMKVYLRPETAQGIFVNFLNVQKTGRMKIPFGICQIGKAFRNEIVARQF 258

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      + K     ++    LG              GD  +
Sbjct: 259 IFRMREFEQMEMQFFVR-PGEELQWFEKWKNLRMQWHRALGF-------------GDDKY 304

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            F             +    + P                        +     +H+   F
Sbjct: 305 RFHDHDKLAHYANAATDIEFEMPF----------------------GFKEVEGIHSRTDF 342

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D L  ++  S + ++     +   +    +    + + G D       +G          
Sbjct: 343 D-LSRHEEFSGKKLQY----FDPEQNKSYVPYVVETSIGLDRMFLTILFGSYCEEET--- 394

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
             +      +  P ++AP K++++ +   D        +I   L        +D+    I
Sbjct: 395 -SNGEMRVVLKLPAALAPVKLAVLPLVRKD-GLDAKAREIVHDLR-FDFACQYDEKD-SI 450

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  + V  + + D+ V I++R T  +E + +  +    S   S
Sbjct: 451 GKRYRRQDAIGTPFCITVDHQSLEDNTVTIRYRDTMEQERVEISRLNAIISEYVS 505


>gi|254828246|ref|ZP_05232933.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
 gi|258600634|gb|EEW13959.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
          Length = 425

 Score = 89.8 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 57/422 (13%), Positives = 114/422 (27%), Gaps = 30/422 (7%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            +    +         E+  P  +  +L+        D   KE
Sbjct: 5   LPRGTRDILPEEVSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKE 64

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +   F  H      + P   Y  +  FR E        R
Sbjct: 65  MYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGG---R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF- 210
            R+F      +                   +  F ++GL +I +   S            
Sbjct: 122 QRQFTQMGIEALGSDDPSIDVEV---ISLAMTFFKKIGLTNIKLVINSLGDKESRLKHRE 178

Query: 211 ----IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E    C       P+   +   D    L              S  + E 
Sbjct: 179 ALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFEN 238

Query: 267 LFDSLP------ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           + + L       E      RG++      F   +      + T     G+ H +     G
Sbjct: 239 VKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGG 298

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                +   +               ++  K   + +             +  +L + G  
Sbjct: 299 PDTPGMGFGIGVERILLALEKADIEISAKKPLEVYVITAQPEAELKAVTLVNKLRQNGIS 358

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              D +  +  +Q   A+       +I+G + +     ++K+  TG +E +S   ++   
Sbjct: 359 AEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEAVSETTILEKL 418

Query: 439 SH 440
           S+
Sbjct: 419 SN 420


>gi|34541737|ref|NP_906216.1| glycyl-tRNA synthetase [Porphyromonas gingivalis W83]
 gi|34398055|gb|AAQ67115.1| glycyl-tRNA synthetase [Porphyromonas gingivalis W83]
          Length = 515

 Score = 89.8 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 112/355 (31%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   AD   K  +   T + +  +           +PF   QI   FR+E+  R  
Sbjct: 199 FATEMGSTADGAMKVYLRPETAQGIFVNFLNVQKTGRMKIPFGICQIGKAFRNEIVARQF 258

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      + K     ++    LG              GD  +
Sbjct: 259 IFRMREFEQMEMQFFVR-PGEELQWFEKWKNLRMQWHRALGF-------------GDDKY 304

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            F             +    + P                        +     +H+   F
Sbjct: 305 RFHDHDKLAHYANAATDIEFEMPF----------------------GFKEVEGIHSRTDF 342

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D L  ++  S + ++     +   +    +    + + G D       +G          
Sbjct: 343 D-LSRHEEFSGKKLQY----FDPEQNKSYVPYVVETSIGLDRMFLTILFGSYCEEET--- 394

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
             +      +  P ++AP K++++ +   D        +I   L        +D+    I
Sbjct: 395 -SNGEMRVVLKLPAALAPVKLAVLPLVRKD-GLDAKAREIVHDLR-FDFACQYDEKD-SI 450

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  + V  + + D+ V I++R T  +E + +  +    S   S
Sbjct: 451 GKRYRRQDAIGTPFCITVDHQSLEDNTVTIRYRDTMEQERVEISRLNAIISEYVS 505


>gi|260172254|ref|ZP_05758666.1| glycyl-tRNA synthetase [Bacteroides sp. D2]
 gi|315920560|ref|ZP_07916800.1| glycyl-tRNA synthetase [Bacteroides sp. D2]
 gi|313694435|gb|EFS31270.1| glycyl-tRNA synthetase [Bacteroides sp. D2]
          Length = 513

 Score = 89.8 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 86/253 (33%), Gaps = 16/253 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       G T++   K + +  +           S         A YA  
Sbjct: 259 FRMREFEQMEMQFFVKPG-TELDWFKKWKEIRLKWHKALGFGDASYRYHDHDKLAHYANA 317

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +      +     E + + +R            K+S      F     + +   +    I
Sbjct: 318 ATDIEFLMPFGFKEVEGIHSRTNFDLSQHE---KFSGKSIKYFDPELNESYTPYVIETSI 374

Query: 320 GAMRV---------VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R+             +E+      +  P ++AP K++++ +   D    +   ++  
Sbjct: 375 GVDRMFLSIMSASYCEEQLENGESRVVLKLPAALAPVKLAVMPLVKKD-GLPEKAREVID 433

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L        +D+    IG ++   D +G P  V V  + + D+ V +++R T  +E ++
Sbjct: 434 SLK-FHFHCQYDEKD-SIGKRYRRQDAIGTPYCVTVDHQTLEDNCVTLRNRDTMQQERVA 491

Query: 431 LEEVINYASHRFS 443
           + E+ N  + R S
Sbjct: 492 ISELNNIIADRVS 504


>gi|50553074|ref|XP_503947.1| YALI0E14597p [Yarrowia lipolytica]
 gi|49649816|emb|CAG79540.1| YALI0E14597p [Yarrowia lipolytica]
          Length = 656

 Score = 89.8 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 71/178 (39%), Gaps = 17/178 (9%)

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           LPE + V   G E+        K ++           +D+   +     G  R++ ++IE
Sbjct: 462 LPEIEGVEVAGTELDKSHIKIEKKTITTHV-------RDYTPNVIEPSFGIGRILYSLIE 514

Query: 331 SSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                +            +P  +AP K+ ++ + +  ++     +++  +L +       
Sbjct: 515 HCFWTRPEDASGAKGVLSFPPRIAPTKVLVVPLSSQKELA-PFTQEVSKKLRQARISAKV 573

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           DD    IG ++A  D +G P  + V    V D+ V ++ R +  +   S++ VI   +
Sbjct: 574 DDSSASIGKRYARNDEMGTPFGITVDFDTVKDNSVTLRERDSTRQVRGSIDAVIAAIN 631



 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 1/68 (1%)

Query: 29 TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYD 87
             I+    G+Y + P G      +    R+        +E+    L   ++   SG  D
Sbjct: 28 AFEIYDGVSGLYDYGPPGCALQTRIIDTWRDHFVLEDDMLEVDTTMLTPHEVLKTSGHVD 87

Query: 88 SYGKEMLR 95
           +   M R
Sbjct: 88 KFADWMCR 95


>gi|282850506|ref|ZP_06259885.1| histidine--tRNA ligase [Veillonella parvula ATCC 17745]
 gi|282579999|gb|EFB85403.1| histidine--tRNA ligase [Veillonella parvula ATCC 17745]
          Length = 423

 Score = 89.8 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 61/415 (14%), Positives = 115/415 (27%), Gaps = 15/415 (3%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLA- 97
            +LP        +   +RE     G  E+  P  +   L++       D   KEM     
Sbjct: 11  DFLPEQMIHWHYIEQRMREICKVYGFNEIRTPAFEETKLFLRGIGETTDVVQKEMYTFTT 70

Query: 98  -DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D    +    P +       +  +    +     +Y +   FR +        R R+F 
Sbjct: 71  GDDGGSSFTLRPENTASAVRAYLENKVYGKEGLTKWYYMGPMFRHDKPQAG---RYRQFH 127

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
              A                M V  L+ F    L                  + I   + 
Sbjct: 128 QFGAEVLGSQSPVVDSEVICMVVQLLKDFGLKDLNVEVNSVGCPTCRPVYREKLIAFFEP 187

Query: 217 GETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
            + Q+   C +     P+   +   +   SL+    +           H E+L   L   
Sbjct: 188 KKEQLCSDCQERLYKNPLRILDCKNETCKSLSVGAPEIHEHLCEECHDHFEELKTYLTAA 247

Query: 275 KRVSA------RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                      RG++      F  +Y+   + +     G+   +     G     +  A+
Sbjct: 248 NVQYTLNPRLVRGLDYYTKTAFEVQYTPLGAQSAVAGGGRYDGLVEELDGPHTPAIGFAM 307

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                            P     + + A     +    KI   L      V  D  G+ +
Sbjct: 308 GMERLLLALEKQNLLPEPTVEPSVFVVALGDAAKVEAFKICQALHDEYITVEMDGQGKSM 367

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +Q   A+ +     +I+G   +   +  I+   T  +E +SL  V    +    
Sbjct: 368 KAQLKYANKINAKYVIILGDDELVRKEAIIRFMDTSEQETVSLNIVAERITSLVK 422


>gi|47097017|ref|ZP_00234590.1| histidyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|254898314|ref|ZP_05258238.1| histidyl-tRNA synthetase [Listeria monocytogenes J0161]
 gi|254912194|ref|ZP_05262206.1| histidyl-tRNA synthetase [Listeria monocytogenes J2818]
 gi|254936522|ref|ZP_05268219.1| histidyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|47014599|gb|EAL05559.1| histidyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|258609116|gb|EEW21724.1| histidyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|293590167|gb|EFF98501.1| histidyl-tRNA synthetase [Listeria monocytogenes J2818]
          Length = 425

 Score = 89.8 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 57/422 (13%), Positives = 113/422 (26%), Gaps = 30/422 (7%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            +    +         E+  P  +  +L+        D   KE
Sbjct: 5   LPRGTRDILPEEVSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKE 64

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +   F  H      + P   Y  +  FR E        R
Sbjct: 65  MYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGG---R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF- 210
            R+F      +                   +  F ++GL +I +   S            
Sbjct: 122 QRQFTQMGIEALGSDDPSIDVEV---ISLAMEFFRKIGLTNIKLVINSLGDKESRLKHRE 178

Query: 211 ----IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E    C       P+   +   D    L              S  + E 
Sbjct: 179 ALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFEN 238

Query: 267 LFDSLP------ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           + + L       E      RG++      F   +      + T     G+ H +     G
Sbjct: 239 VKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGG 298

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                +   +               +   K   + +             +  +L + G  
Sbjct: 299 PDTPGMGFGIGVERILLALEKADIEIPAKKPLEVYVITAQPEAELKAVTLVNKLRQNGIS 358

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              D +  +  +Q   A+       +I+G + +     ++K+  TG +E +S   ++   
Sbjct: 359 AEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEAVSETTILEKL 418

Query: 439 SH 440
           S+
Sbjct: 419 SN 420


>gi|186476177|ref|YP_001857647.1| histidyl-tRNA synthetase [Burkholderia phymatum STM815]
 gi|229558662|sp|B2JIV0|SYH_BURP8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|184192636|gb|ACC70601.1| histidyl-tRNA synthetase [Burkholderia phymatum STM815]
          Length = 446

 Score = 89.8 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 63/424 (14%), Positives = 116/424 (27%), Gaps = 25/424 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +     ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFETTVKSMLRSYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FTDALNGENLTMRPENTAAVVRASIEHNMLYDGPKRLWYIGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDTDAEIILMCQRLWDDLGLTGIKLEINSLGLAEERAKHRVELIAYLE 192

Query: 216 TGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                +     +     P+   +T    + ++     +        S  H E L   L  
Sbjct: 193 KHMDVLDEDAKRRLYTNPLRVLDTKNPALQAVAQNAPKLIDFLGDESRAHFEGLQRILKA 252

Query: 274 NKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           N           RG++  ++  F       + A    A G  +   +   G         
Sbjct: 253 NNIPFTINPRLVRGLDYYNLTVFEWVTDK-LGAQGTVAAGGRYDPLIEQLGGKPTAACGW 311

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW----DD 383
            +      + +   + V   +   + +    +  RD    +  RL   G DV      D 
Sbjct: 312 AMGIERILELLKEENLVPENEGCDVYVAHQGEAARDQAFIVAERLRDTGLDVILHCSPDG 371

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLT------GIREDMSLEEVIN 436
                 SQ   AD  G    VI+G   +++    +K  R +        ++ + LE++  
Sbjct: 372 QASSFKSQMKRADASGAAFAVILGEDEIANGTAGVKALRDSSQSNGKSEQQTVPLEDLTE 431

Query: 437 YASH 440
           Y  +
Sbjct: 432 YLIN 435


>gi|116490653|ref|YP_810197.1| histidyl-tRNA synthetase [Oenococcus oeni PSU-1]
 gi|290890067|ref|ZP_06553150.1| hypothetical protein AWRIB429_0540 [Oenococcus oeni AWRIB429]
 gi|116091378|gb|ABJ56532.1| histidyl-tRNA synthetase [Oenococcus oeni PSU-1]
 gi|290480258|gb|EFD88899.1| hypothetical protein AWRIB429_0540 [Oenococcus oeni AWRIB429]
          Length = 422

 Score = 89.8 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 127/414 (30%), Gaps = 25/414 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLW-VESG-RYDSYGKEML 94
           G    LP  Q   D +N   +E    R     +  P  ++ +++   SG   D   KEM 
Sbjct: 11  GTADLLPAVQAIWDKINRAAQEIFGRRYRFGRIDTPLFENYEIFARTSGDSSDVVSKEMY 70

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
              D+ ++ +   P     +   +  +         P   Y ++  FR E        R+
Sbjct: 71  DFYDKGNRHLALRPEGTAGVVRAYVENKLYGPEYEKPVNLYYLESMFRYERPQAG---RT 127

Query: 153 REFLMKDAYSFDLTPEGSKHSY---------NKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           REF      SF                         +++   + LG +       S  + 
Sbjct: 128 REFHQLGVESFGSDSPFLDAQIIQMAIDFFQEFNLDNFIVKINSLGDEESRTNYRSALVD 187

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                E  +  D+           +D   P +     D   +   + Q +          
Sbjct: 188 YLKQFEDRLSNDSKNRLKSNPLRILDSKDPKDQELLIDAPKILDYLNQESKDRFKKVTKA 247

Query: 264 NEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            +  FD   E      RG++     IF   T+     S+      G+   +     G   
Sbjct: 248 LDD-FDISYEIDNKLVRGLDYYNNTIFEIETRDPKLKSSATVCGGGRYSGMVEEFGGP-- 304

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV-GCDVF 380
                A+       + I     +     + + I   D+   +    +  RL +     V 
Sbjct: 305 --ETPAIGFGIGLERLITLVGQIEDQDHNDVYIVQTDKSVNEFANLLAKRLREKFHFGVL 362

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            D     + SQ   AD       +++G + V + KV IK    G ++ + L+++
Sbjct: 363 LDYTDRSMKSQLKSADRTKSRYSIVIGEEEVKNKKVTIKKMADGSQKKILLDKL 416


>gi|302798685|ref|XP_002981102.1| hypothetical protein SELMODRAFT_268427 [Selaginella moellendorffii]
 gi|300151156|gb|EFJ17803.1| hypothetical protein SELMODRAFT_268427 [Selaginella moellendorffii]
          Length = 676

 Score = 89.8 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 12/139 (8%)

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---------HDQVCRDACEK 367
              G  R++  + E   D +          F      +            +    +  + 
Sbjct: 516 PSFGIGRIIYCLFEHCFDTREGADSVEQLNFFRFPPVVAPVKCSVFSLVQNAGLDELAQS 575

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I   L + G  V  D  G  IG ++A  D +G P  + V S       V ++ R +  + 
Sbjct: 576 ISVELRRAGLAVKTDITGRSIGKRYARTDEIGIPFAITVDSSE---GGVTVRDRDSKEQI 632

Query: 428 DMSLEEVINYASHRFSNNR 446
            + +E+V    +   + N+
Sbjct: 633 RVPVEQVTQLLTDLSAGNK 651



 Score = 44.7 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G++ + P G    DNV +   +        +++  P L    +   SG  D +   M++
Sbjct: 81  AGLFDYGPPGSAVKDNVLSFWHQHFVVYDDLLKVDCPCLTPEAVLKASGHVDRFTDLMVK 140

Query: 96  LADRNDK 102
                D 
Sbjct: 141 DVKLGDC 147


>gi|227510275|ref|ZP_03940324.1| histidyl-tRNA synthetase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189927|gb|EEI69994.1| histidyl-tRNA synthetase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 430

 Score = 89.8 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 58/423 (13%), Positives = 114/423 (26%), Gaps = 18/423 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP   +    V    R   N     E+  P  ++ D++  +     D   KEM  
Sbjct: 8   GTADILPEEARKWTYVEETARMLFNDYRYQEIRTPMFENFDVFSRTSGDTSDVVTKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   F  +         P   + +   FR E        R R
Sbjct: 68  FKDKGDRHISLRPEGTAGVVRAFVENKLYGPEHQRPVKVFYMGSMFRYERPQSG---RQR 124

Query: 154 EFLMKDAYSFDLTPEG---------SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      +F                   ++          + LG  +         I  
Sbjct: 125 EFHQIGVEAFGSDEPELDVEVIAMGMDLLHHFGLKDIRLEINSLGDAASRDAYRQALIDY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVH 263
              H   +  D+           +D     +     D  S+ + + +     +     + 
Sbjct: 185 LDPHFDELSKDSQVRLHKNPLRVLDSKDKQDQEIVKDAPSILDYLNDDSKKHFERVKKLL 244

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           +      + +   V         IF       +L    T   A G+ + +     G    
Sbjct: 245 DTLHIPYVIDPDMVRGLDYYTHTIFEIMVDSKALGEGYTTICAGGRYNGLVEQLGGPEMP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            +   +                         +    +       KI   L   G     D
Sbjct: 305 GIGFGLGMERLMLLMDAQGVKFPVLDQLDAYVVGIGEQTSIETLKIVQALRANGFAADRD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +  +  +QF  AD L     + +G   +      +K   +G   ++ ++++IN      
Sbjct: 365 YLNRKPKAQFKSADKLNAQYTITIGESELESHTANVKSMASGKEINVPIDKIINDFDEII 424

Query: 443 SNN 445
           ++N
Sbjct: 425 TSN 427


>gi|6325338|ref|NP_015406.1| Grs2p [Saccharomyces cerevisiae S288c]
 gi|74676425|sp|Q06817|SYG2_YEAST RecName: Full=Glycyl-tRNA synthetase 2; AltName: Full=Diadenosine
           tetraphosphate synthetase; Short=AP-4-A synthetase;
           AltName: Full=Glycine--tRNA ligase 2; Short=GlyRS 2;
           Short=GlyRS2
 gi|1230687|gb|AAB68130.1| Ypr081cp [Saccharomyces cerevisiae]
 gi|151942862|gb|EDN61208.1| glycyl-tRNA synthase [Saccharomyces cerevisiae YJM789]
 gi|190408014|gb|EDV11279.1| glycyl-tRNA synthetase 2 [Saccharomyces cerevisiae RM11-1a]
 gi|259150234|emb|CAY87037.1| Grs2p [Saccharomyces cerevisiae EC1118]
 gi|285815607|tpg|DAA11499.1| TPA: Grs2p [Saccharomyces cerevisiae S288c]
          Length = 618

 Score = 89.8 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 82/283 (28%), Gaps = 20/283 (7%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF--------MDFPI 232
           + +              +   +      E +  AD     +                   
Sbjct: 319 FRQHLKNEMAHYATDCWDGEILTSYGWIECVGCADRAAFDLTVHSKKTGRSLTVKQKLDT 378

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV-----GHI 287
           P E T++   ++      ++         V ++   D L        +  E      G I
Sbjct: 379 PKERTEWVVEVNKKFFGSKFKQKAKLIESVLSKFSQDELIRRHEELEKNGEFTCQVNGQI 438

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
               +        T      +++   +     G  R++  + +     +          F
Sbjct: 439 VKLDSSLVTIKMKTTL-QHIREYIPNVIEPSFGLGRIIYCIFDHCFQVRVDSESRGFFSF 497

Query: 348 KISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            + +  IK      +++       ++I   L K       DD    IG ++A  D LG P
Sbjct: 498 PLQIAPIKVFVTTISNNDGFPAILKRISQALRKREIYFKIDDSNTSIGKKYARNDELGTP 557

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + +  + + D  V ++ R +  +   ++ +VI+       N
Sbjct: 558 FGITIDFETIKDQTVTLRERNSMRQVRGTITDVISTIDKMLHN 600



 Score = 50.5 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G++   P G +  +N+  + RE        +++  P L   D+   SG  D +   M R
Sbjct: 33  SGLFDLGPPGCQLQNNLIRLWREHFIMEENMLQVDGPMLTPYDVLKTSGHVDKFTDWMCR 92

Query: 96  LADRNDKAMIYGPTHEE 112
              +  +        E+
Sbjct: 93  -NPKTGEYYRADHLIEQ 108


>gi|284166745|ref|YP_003405024.1| histidyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
 gi|284016400|gb|ADB62351.1| histidyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
          Length = 434

 Score = 89.8 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 125/427 (29%), Gaps = 42/427 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P    A   V   +     R G  E+  P L+   ++  +SG  +   +E+   
Sbjct: 7   GFRDFYPAEMGARREVIDTLEATARRYGFREVGTPALERTQMYVDKSG--EEIVEELYAF 64

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +  +  +  +   + P  +   +  +R E   +    R REF 
Sbjct: 65  EDKGGREVALTPELTPTVARMVVAKQQ-ELSKPIKWVSTRPFWRYEQVQQG---RFREFY 120

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +   F  +   +           L      G +    R     I G L   F    DT
Sbjct: 121 QTNVDIFGSSEPEADAEILAFAADALTDLGLTGEEFEF-RVSHRDILGGLFESFDADVDT 179

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN-- 274
               +              +    D         ++    A   D  +E +  +  +   
Sbjct: 180 A-AAIRAVDKSEKISHNEYHDLLVDAGLSYDQAAEFDDLLAVGEDDLDELVEFAGTDRVE 238

Query: 275 ------------------------KRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGK 308
                                      +ARG++   G +F           + F G    
Sbjct: 239 AAVTNLQNVLEAAADFGAREYCTLSLETARGLDYYTGVVFECFDSTGEVSRSVFGGGRYD 298

Query: 309 DHYVQMGSYGIGAMRVVAAVI-ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           D     G     A+ V   +   S    +  +WPD        ++ I            +
Sbjct: 299 DLIESFGGQPTPAVGVAPGLAPLSLLLQRADVWPDEAFTTDYYVLQIGDTRSE----AAR 354

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I   L + G  V  D      GSQ   AD +     V+ G + + + +V IK   +G + 
Sbjct: 355 IVRDLRERGHVVETDVADRSFGSQLNYADSINAETVVVAGEQDLENDEVTIKDMESGDQT 414

Query: 428 DMSLEEV 434
              ++E 
Sbjct: 415 QAPIDEF 421


>gi|167581706|ref|ZP_02374580.1| histidyl-tRNA synthetase [Burkholderia thailandensis TXDOH]
          Length = 446

 Score = 89.8 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 113/426 (26%), Gaps = 29/426 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 TGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               ++     +     P+   +T    +  +     +        S  H E L   L  
Sbjct: 193 QHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSRAHFEGLQRLLKA 252

Query: 274 NKR------VSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           N           RG++     +F + T           G        Q+G     A    
Sbjct: 253 NNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWA 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW---- 381
             +       K            + +++        R+    +  RL   G DV      
Sbjct: 313 MGIERILELLKEEHLVPEQEGVDVYVVHQG---DAAREQAFIVAERLRDTGLDVILHCSA 369

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGI------REDMSLEEV 434
           D  G    SQ   AD  G    VI G   V++    +K  R TG       ++ + +E +
Sbjct: 370 DGAGASFKSQMKRADASGAAFAVIFGEDEVANGTASVKPLRGTGDDGEKSVQQSVPVESL 429

Query: 435 INYASH 440
             +  +
Sbjct: 430 TEFLIN 435


>gi|313608679|gb|EFR84516.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL F2-208]
          Length = 427

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 56/422 (13%), Positives = 113/422 (26%), Gaps = 30/422 (7%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            +    +         E+  P  +  +L+        D   KE
Sbjct: 7   LPRGTRDILPEEVSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKE 66

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +   F  H      + P   Y  +  FR E        R
Sbjct: 67  MYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGG---R 123

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF- 210
            R+F      +                   +  F ++GL +I +   S            
Sbjct: 124 QRQFTQMGIEALGSDDPSIDVEV---ISLAMTFFKKIGLTNIKLVINSLGDKESRLKHRE 180

Query: 211 ----IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E    C       P+   +   D    L              S  + E 
Sbjct: 181 ALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFEN 240

Query: 267 LFDSLP------ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           + + L       E      RG++      F   +      + T     G+ H +     G
Sbjct: 241 VKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGG 300

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                +   +               +   K   + +             +  +L + G  
Sbjct: 301 PDTPGMGFGIGVERILLALEKADIEIPSKKPLEVYVITAQPEAELKAVTLVNKLRQNGIS 360

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              D +  +  +Q   A+       +I+G + +     ++K+  TG +E +S   ++   
Sbjct: 361 AEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEAVSETTILEKL 420

Query: 439 SH 440
           ++
Sbjct: 421 TN 422


>gi|302801640|ref|XP_002982576.1| hypothetical protein SELMODRAFT_268613 [Selaginella moellendorffii]
 gi|300149675|gb|EFJ16329.1| hypothetical protein SELMODRAFT_268613 [Selaginella moellendorffii]
          Length = 676

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 12/139 (8%)

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---------HDQVCRDACEK 367
              G  R++  + E   D +          F      +            +    +  + 
Sbjct: 516 PSFGIGRIIYCLFEHCFDTREGADSVEQLNFFRFPPVVAPVKCSVFSLVQNAGLDELAQS 575

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I   L + G  V  D  G  IG ++A  D +G P  + V S       V ++ R +  + 
Sbjct: 576 ISVELRRAGLAVKTDITGRSIGKRYARTDEIGIPFAITVDSSE---GGVTVRDRDSKEQI 632

Query: 428 DMSLEEVINYASHRFSNNR 446
            + +E+V    +   + N+
Sbjct: 633 RVPVEQVTQLLADLSAGNK 651



 Score = 44.7 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G++ + P G    DNV +   +        +++  P L    +   SG  D +   M++
Sbjct: 81  AGLFDYGPPGSAVKDNVLSFWHQHFVVYDDLLKVDCPCLTPEAVLKASGHVDRFTDLMVK 140

Query: 96  LADRNDK 102
                D 
Sbjct: 141 DVKLGDC 147


>gi|260424642|ref|ZP_05732783.2| histidine--tRNA ligase [Dialister invisus DSM 15470]
 gi|260402663|gb|EEW96210.1| histidine--tRNA ligase [Dialister invisus DSM 15470]
          Length = 423

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 53/407 (13%), Positives = 117/407 (28%), Gaps = 27/407 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            ++V ++I+E     G  E+  P  +   L++       D   KEM    DR  +++   
Sbjct: 22  WNHVESVIKELCALYGYSEIRTPMFEDTKLFLRGIGDTTDVVAKEMYTFEDRGGRSITLR 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P +   +   +  H           + I   FR +           +F ++   +     
Sbjct: 82  PENTAAVVRSYLEHKLYGDQQVHKLFYIGSMFRYDRPQAGRYREFHQFGVEVLGASSPAA 141

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +    +        L +       +     +  PI      EF    +       C    
Sbjct: 142 DAEVINLAYTLFKTLGLKELELHINSIGDYKCRPIYRQKLIEFFEEKEDQLCDD-CQARL 200

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF--------DSLPENKRVSA 279
              P+   +   D     ++   + T       +   E +           L +++ V  
Sbjct: 201 HKNPLRILDCKEDSCRRASAGAPKITDYLCDECEKKFEAVKRYLAALEIPYLVDSRLVRG 260

Query: 280 RGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                   F       G + ++     + G   D          + +G  R++ A+    
Sbjct: 261 LDYYTNTAFEIQYPPLGAQSAICGGGRYDGLVEDVGGPSTPGIGFAVGLERLLLALEMQK 320

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
              +              +  +   +    +   KI   L   G     D     I  Q 
Sbjct: 321 LIPEPANRKK--------VYIVTLGEDAVVE-GIKIQQHLRDKGVIAEIDLQDRSIKGQM 371

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             A        VI+G+  +   +  +K+   G ++D+   +V ++ +
Sbjct: 372 KQAGKNNAEYTVIIGANEMEKKEAAVKNMENGKQQDIPFLKVSDFIT 418


>gi|290475998|ref|YP_003468894.1| histidine tRNA synthetase [Xenorhabdus bovienii SS-2004]
 gi|289175327|emb|CBJ82130.1| histidine tRNA synthetase [Xenorhabdus bovienii SS-2004]
          Length = 425

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/414 (12%), Positives = 112/414 (27%), Gaps = 18/414 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V + ++      G  E+  P ++   L+  + G   D   KEM    DRN
Sbjct: 15  LPAETAIWQRVESTVKRVLAGYGFSEIRTPIVEQTPLFKRAIGEVTDVIEKEMYTFDDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF---RDELRPRFGVMRSREFLM 157
            +++   P +          H   Y      +Y   +       + R R       E   
Sbjct: 75  GESLALRPENTAGCVRAGIQHGLLYNQEQRLWYIGPMFRYERPQKGRYRQFHQLGAEVFG 134

Query: 158 KDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                 D         + +            + +G            +     H+  +  
Sbjct: 135 LQGPDIDAEMILMTARWWRELGIAEHVTLELNSIGSLDARANYREALVAFLEQHKETLDE 194

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEK-----LF 268
           D            +D   P      +D  +L   ++  +   +     + +       L 
Sbjct: 195 DCQRRMYTNPLRVLDSKNPEIQVLLNDAPALFDYLDTESKEHFDGVCRILDSAGIKYHLN 254

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             L        R +        G + ++     + G    +      +  +G    +  +
Sbjct: 255 QRLVRGLDYYNRTVFEWVTSALGAQGTVCAGGRYDGLV--EQLGGKSTPAVGFAMGMERM 312

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +    +       D            +   Q   +  E+I   L +    +  +  G   
Sbjct: 313 VLLVQEVNPEFVADLAVADVYLSSFGEGSQQAALNLAEQIRDELPE--LRLMTNHGGGNF 370

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             Q   AD  G  + +I+G   +    + +K    G +E +S + +    S   
Sbjct: 371 KKQLGRADKHGAKVALILGEDEIRAGNITVKDLRNGEQETLSQQAIAARLSELL 424


>gi|325686499|gb|EGD28527.1| histidine--tRNA ligase [Streptococcus sanguinis SK72]
          Length = 426

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/402 (14%), Positives = 115/402 (28%), Gaps = 25/402 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
           +   +     +M     + F  +G+ ++ +   S       +                  
Sbjct: 137 SNPATD---VEMIAMAAQFFKDIGITNVSLELNSLGNPESRAAYRQALIDYLTPLKPSLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D     +    +   S+   +++ ++ Y A      E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEAEDKAAVEGAPSILDYLDEESSAYFAAVRSMLETLQIPYVI 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               V         IF F T+ +         A G+   +     G     V   +    
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLT--ICAGGRYDGLVAYFGGPETPGVGFGMGLER 311

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      +       + +            ++   L   G     D +  ++ +QF
Sbjct: 312 LLLVLDKQGVELPIETALDVYVAVLGADANGRALELVQALRTQGFAAERDYLDRKLKAQF 371

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             AD+      + +G   V   +V +K+        +SL+++
Sbjct: 372 KSADIFKAKTLITLGESEVESGQVTVKNNHNREEITVSLDQI 413


>gi|224499819|ref|ZP_03668168.1| histidyl-tRNA synthetase [Listeria monocytogenes Finland 1988]
          Length = 425

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/422 (13%), Positives = 113/422 (26%), Gaps = 30/422 (7%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            +    +         E+  P  +  +L+        D   KE
Sbjct: 5   LPRGTRDILPEEVSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKE 64

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +   F  H      + P   Y  +  FR E        R
Sbjct: 65  MYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGG---R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF- 210
            R+F      +                   +  F ++GL +I +   S            
Sbjct: 122 QRQFTQMGIEALGSDDSSIDVEV---ISLAMEFFRKIGLTNIKLVINSLGDKESRLKHRE 178

Query: 211 ----IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E    C       P+   +   D    L              S  + E 
Sbjct: 179 ALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFEN 238

Query: 267 LFDSLP------ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           + + L       E      RG++      F   +      + T     G+ H +     G
Sbjct: 239 VKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGG 298

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                +   +               +   K   + +             +  +L + G  
Sbjct: 299 PDTPGMGFGIGVERILLALEKADIEIPAKKPLEVYVITAQPEAELKAVTLVNKLRQNGIS 358

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              D +  +  +Q   A+       +I+G + +     ++K+  TG +E +S   ++   
Sbjct: 359 AEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEAVSETTILEKL 418

Query: 439 SH 440
           S+
Sbjct: 419 SN 420


>gi|68248972|ref|YP_248084.1| histidyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
 gi|81336616|sp|Q4QNH3|SYH_HAEI8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|68057171|gb|AAX87424.1| histidyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
          Length = 423

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 131/412 (31%), Gaps = 27/412 (6%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y     FR E   +    +  +  ++     +  
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWYI-GPMFRHERPQKGRYRQFHQVGVEVFGIANPE 138

Query: 167 PEGSKHSYNKMFVSYLRIFHR-------LGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +             L I          +G         S  +G   +H+ ++  +  E 
Sbjct: 139 IDAELIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLENHQDLMSDEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVS 278
            V      +D   P      D+   L   ++  + A +     + +          K V 
Sbjct: 199 LVRNPLRILDTKNPELQKVLDNAPKLLDYLDDESRAHFEQLCSLLDAVGIQYEINPKLVR 258

Query: 279 ARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   +F       G + ++     + G       H      + +G  R+V  V E 
Sbjct: 259 GLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAMGLERLVLLVQEV 318

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           + +       D    ++     +     V  +  EK+ + L     +      G     Q
Sbjct: 319 NPNVPTKSAVDIYVVYQGEGATL-----VAFELAEKVRSELP--HLNTMLHCSGGNFKKQ 371

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
           F  AD  G  L +++G   V + +V +KH   G  ++ + L  +I+Y   +F
Sbjct: 372 FKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVNIIDYLQTQF 423


>gi|254518565|ref|ZP_05130621.1| histidyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226912314|gb|EEH97515.1| histidyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 415

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/400 (14%), Positives = 115/400 (28%), Gaps = 10/400 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  ++R+     G  E+  P  +  +L++       D   KEM    D+ D+++   
Sbjct: 20  WHYVEGVLRDVSKSYGVREIRTPMFEHTELFLRGVGETTDIVQKEMYTFNDKGDRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F  +       P   Y I   FR E   +    R R+F       F    
Sbjct: 80  PEGTAPTVRAFIENRLFNEAQPTKLYYIIPCFRYENVQKG---RLRQFHQYGVEVFGSKE 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV--FCSK 225
                    + +  L+      L                +       +     +   C  
Sbjct: 137 ASIDAEVISLAMESLKKLGLKSLSLNINNLGCPKCRPKYNEALKKYLEENYDNLCGICKT 196

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR--GIE 283
            F   P+   +        +               D H  ++ + L   K       GI 
Sbjct: 197 RFEKNPMRILDCKEKSCNEITKHAPIILDYICEECDSHFTEVKNYLDALKIQYKVDPGIV 256

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
            G  +Y  T + +          G+   +     G     V   +               
Sbjct: 257 RGLDYYTKTIFEILNDDFTVCGGGRYDKLIEEIGGPEMPAVGFGLGLERLIMTLEKEGIE 316

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +    +  + I A  +  + +   +  +L  +G     + MG  I ++   A+ +G    
Sbjct: 317 IPNEGVVDLYIGARGEAAKTSAFVLANKLRAIGIKTEINHMGRSIKAEMKYANKIGSAFT 376

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            I+G   + +  +++K    G + ++SL+  I   +    
Sbjct: 377 TILGDDELQNKTLKLKRMSDGEQFEVSLDN-IEEIAKLVK 415


>gi|15238286|ref|NP_196649.1| tRNA synthetase-related / tRNA ligase-related [Arabidopsis
           thaliana]
 gi|8979722|emb|CAB96843.1| putative protein [Arabidopsis thaliana]
 gi|332004222|gb|AED91605.1| tRNA synthetase/ligase-related protein [Arabidopsis thaliana]
          Length = 309

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 70/198 (35%), Gaps = 10/198 (5%)

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           A   +   +   ++    + V       G      +  S      +     K    ++  
Sbjct: 11  AKKDEDFGKWYSEACRFGELVEYYESVKGCYILKPSGISDEYLERYTNTTLKGLLQRLLG 70

Query: 317 YGIGAMR-----VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD----QVCRDACEK 367
                 +        A   +  D KG+++P  VAP ++ +I++        Q   DACE 
Sbjct: 71  LQELVDKRTQGPPFEAACMTHGDDKGLVFPPKVAPVQVVVIHVPIKGAADYQELCDACEA 130

Query: 368 IYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           + + L   G     D       G ++A  +L G PL++  G + +++ +V I  R  G +
Sbjct: 131 VESTLLGAGIRAEADIRDNYSCGWKYADQELTGVPLRIETGPRDLANDQVRIVTRDNGAK 190

Query: 427 EDMSLEEVINYASHRFSN 444
            D+   ++I         
Sbjct: 191 MDVKRGDLIEQVKDLLEK 208


>gi|115400861|ref|XP_001216019.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114191685|gb|EAU33385.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 514

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/422 (13%), Positives = 126/422 (29%), Gaps = 83/422 (19%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G Y   P      + + A ++++  R G  + + P L S ++   SG  D+    M   
Sbjct: 44  PGFYILKPASYAIWERICASLKDKLKRMGVQDCAFP-LSSLEITGTSG--DNGDPCMDT- 99

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               +  +         +       I +  +LP    Q +  FR E  P+  +      +
Sbjct: 100 ----EPRLRNRQNATSTIYSCCARWIANPGDLPLRLNQWKTAFRSEPCPQPFLRCRELLI 155

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                                                   A +  +    +HE ++    
Sbjct: 156 Q--------------------------------------EAHTAHMTQYEAHEEMLQV-- 175

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
               ++ +       +P              ++    +   ++ +VH   LF  +P  ++
Sbjct: 176 --LDIYTAVYEELLAVP--------------LIRGLQSDPNSSDEVHTAVLFGLVPALEQ 219

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGA-----MRVVAAVIE 330
                I+ G     G + S   + T      G         +         +R +  ++ 
Sbjct: 220 C----IQAGACHELGQQMSKEYNITTSDVPVGSQTVSNSTVHVWQNSWNLSIRAIGLMVA 275

Query: 331 SSHDGKGIIWPDSVAPFKISLIN-----IKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           +  D +G++ P  +A  ++ +I       K      R     I +  + +G  V  D   
Sbjct: 276 THGDNRGLVLPPHIAETQVVIIPHQDSRNKNDHHKIRAEILSIQSTFASLGVRVSADLRD 335

Query: 386 -EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT---GIREDMSLEEVINYASHR 441
               G +       G P++++ GS+ ++   V +  R          + L ++       
Sbjct: 336 WRSTGWKMKEWITRGAPIRLVFGSEELAGRYVTVCQRDLPKPNEEITIPLSQLPTAIPTL 395

Query: 442 FS 443
            +
Sbjct: 396 LA 397


>gi|308070357|ref|YP_003871962.1| histidyl-tRNA synthetase 2 (histidine--tRNA ligase 2)
           [Paenibacillus polymyxa E681]
 gi|305859636|gb|ADM71424.1| Histidyl-tRNA synthetase 2 (Histidine--tRNA ligase 2)
           [Paenibacillus polymyxa E681]
          Length = 414

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/402 (14%), Positives = 128/402 (31%), Gaps = 21/402 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  +L+V       D   KEM    D+  ++M   
Sbjct: 20  WQVVEEKAREISRRFNYREIRTPMFEQTNLFVRGVGETTDVVEKEMYTFEDKGKRSMTLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  +           Y I   FR E        +  +F ++   + D   
Sbjct: 80  PEGTAGVVRSYVENKLYGEPDVTKLYYIGPMFRYERPQAGRQRQFHQFGIEAFGAVDPAL 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF-IVLADTGETQVFCSKD 226
           +    ++   F   L +       +    A S         +F + + DT   +     +
Sbjct: 140 DAEVIAFGYQFCRELGLKGVQVEINSVGNAASRAAYRQHLVDFLMPIKDTLTKESQARIE 199

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA---RGIE 283
                +     D D      SI++      + T     ++  D++     V+    RG++
Sbjct: 200 RNPLRVLDSKDDQDKFGGAPSILDSLDE-ESRTHFEKVKQNLDAMGVEYTVNPRLVRGLD 258

Query: 284 VGHIFYF-------GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              +  F       G   ++     + G  G          G G       +I      K
Sbjct: 259 YYTLTAFEFKAEGIGAIDTIGGGGRYNGLVGDLGGPDQPGIGFGIGLERIQLILEHQGVK 318

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                       + +  +   +    +  ++++ +L + G     D +G ++ +Q   AD
Sbjct: 319 LNEAKP------LDIYMVALGEAAETEVTKQLF-KLRQAGFSAERDYLGRKMKAQMKSAD 371

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
                   I+G   ++  ++ +K+  TG +  + L++++   
Sbjct: 372 RFKARYTAILGEDELAQGEIALKNMETGEQRTVKLDQLVEEL 413


>gi|288924620|ref|ZP_06418557.1| glycine--tRNA ligase [Prevotella buccae D17]
 gi|315607503|ref|ZP_07882498.1| glycyl-tRNA synthetase beta subunit [Prevotella buccae ATCC 33574]
 gi|288338407|gb|EFC76756.1| glycine--tRNA ligase [Prevotella buccae D17]
 gi|315250686|gb|EFU30680.1| glycyl-tRNA synthetase beta subunit [Prevotella buccae ATCC 33574]
          Length = 523

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 104/355 (29%), Gaps = 47/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM  L+D  +K  +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 198 FSTEMGSLSDATNKIYLRPETAQGIFVNYLNVQKTGRMKLPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           V R REF   +   F   P      +       L     LG              G  ++
Sbjct: 258 VFRMREFEQMEMQFFCQ-PGTEMKWFEYWKKVRLAWHETLG-------------MGKENY 303

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            F             +      P                        +     +H+   F
Sbjct: 304 RFHDHEKLAHYANAATDIEFKMPF----------------------GFKEVEGIHSRTDF 341

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     K         G    +           +                +         
Sbjct: 342 DLSQHEK-------YSGRSIKYFDPDKNESYTPYDVETSIGVDRM--FLSVLCHSYEEEQ 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P+++AP K ++  +   D    +  ++I   L     +  + D  + I
Sbjct: 393 LENGETRVVLKLPEALAPVKCAVFPLDKKD-GLPELAQEIVDDLK-FHFNTHYGDPKDSI 450

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  V V     +D KV ++ R T  +E + + ++ +    R S
Sbjct: 451 GKRYRRQDAVGTPFCVTVDHDTPNDHKVTLRFRDTMEQERVDISQLRSIIEDRVS 505


>gi|262283662|ref|ZP_06061427.1| histidyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
 gi|262260719|gb|EEY79420.1| histidyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
          Length = 426

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/402 (14%), Positives = 115/402 (28%), Gaps = 25/402 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEEFARETFRKYNYAEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKLYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
           +   +     +M     + F  +G+ ++ +   +       +                  
Sbjct: 137 SNPATD---VEMIAMAAQFFKEIGITNVSLELNTLGNPESRAAYRQALIDYLTPLKASLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D   P +    +   S+   +++ ++ Y        E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEPEDKVAVEGAPSILDYLDEESSAYFEAVRSMLETLQIPYVI 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               V         IF F T+ +         A G+   +     G     V   +    
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLT--ICAGGRYDGLVAYFGGPETPGVGFGMGLER 311

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      +         I            ++   L   G     D +  +I +QF
Sbjct: 312 LLLVLDKQGVELPIEMGLDAYIAVLGAGANGKALELVQSLRAQGFAAERDYLDRKIKAQF 371

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             AD+      + +G   +   ++ +K+ +T     ++LE +
Sbjct: 372 KSADIFQAKTIITLGESELESGELTVKNNVTRQEVTVALEAI 413


>gi|193213734|ref|YP_001994933.1| histidyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
 gi|259511939|sp|B3QS95|SYH_CHLT3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|193087211|gb|ACF12486.1| histidyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
          Length = 427

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 64/407 (15%), Positives = 115/407 (28%), Gaps = 20/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKA-MIY 106
              V   +R    R G  E+  P  +   L+        D  GKEM       +   +  
Sbjct: 20  WHYVENTVRGVFQRFGYNEIRTPVFEQTALFQRGIGETTDIVGKEMYSFQPDPESESLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDL 165
            P     +   +  H  S  +     + I   FR E        R R+F           
Sbjct: 80  RPEMTAPVMRAYLQHSLSGTSPATKVFYISEIFRKERPQAG---RQRQFWQFGCECIGSD 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV---F 222
            PE        M   Y ++  +     +    E+         E +         +    
Sbjct: 137 QPEADAEVILLMTEIYRQLGIKNFTLRLNSLGETES--RLAHREALQTYLKPHFDLLDEI 194

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR------ 276
               F   P+   ++    +  + +     T      S  H + +   L           
Sbjct: 195 SKTRFEKNPLRILDSKNPALAEIIAGAPHITEFLDDASKAHFQTVQTYLKNAGLDFTVDP 254

Query: 277 VSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
              RG++      F   +       A   G         +G+    A    AA IE    
Sbjct: 255 TLVRGLDYYSRTAFELVSTDLGAQDALAGGGRYDSLATVLGAKNSSAAVGFAAGIERLLI 314

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
               +           L+ I     V ++   +   RL   G  V  D +G  + +Q   
Sbjct: 315 IMEKLDLFQAVLPPAPLLFIATQSPVAKEWAFQTVNRLRTEGIHVALDLLGRSLKAQMRE 374

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           A+       +IVG + +S  + ++KH  T  + ++S  ++       
Sbjct: 375 ANRTHAKYVLIVGEEELSTGRFQLKHLQTSEQVELSEADIFTKMQTE 421


>gi|29349019|ref|NP_812522.1| glycyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253571164|ref|ZP_04848571.1| glycyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|298386727|ref|ZP_06996282.1| glycine--tRNA ligase [Bacteroides sp. 1_1_14]
 gi|29340926|gb|AAO78716.1| glycyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251839117|gb|EES67201.1| glycyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|298260401|gb|EFI03270.1| glycine--tRNA ligase [Bacteroides sp. 1_1_14]
          Length = 513

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 109/355 (30%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   +D   K  +   T + +  +           +PF   QI   FR+E+  R  
Sbjct: 198 FSTEMGSTSDGAMKIYLRPETAQGIFVNYLNVQKTGRMKVPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      + K     L+    LG              GD S+
Sbjct: 258 IFRMREFEQMEMQFFVK-PGTELDWFKKWKEIRLKWHKALGF-------------GDASY 303

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            +             +      P                        +     +H+   F
Sbjct: 304 RYHDHDKLAHYANAATDIEFLMPF----------------------GFKEVEGIHSRTNF 341

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     K         G    +           +             S    A       
Sbjct: 342 DLSQHEK-------FSGKSIKYFDPELNESYTPYVIETSIGVDRMFLSIMSAAY--CEEQ 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P ++AP K++++ +   D    +   +I   L        +D+    I
Sbjct: 393 LENGESRVVLKLPAALAPVKLAVMPLIKKD-GLPEKAREIIDALK-FHFHCQYDEKD-SI 449

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  V V  + + D+ V +++R T  +E +++ E+ N  + R S
Sbjct: 450 GKRYRRQDAIGTPFCVTVDHQTLEDNCVTLRNRDTMQQERVAISELNNIIADRVS 504


>gi|73541773|ref|YP_296293.1| histidyl-tRNA synthetase [Ralstonia eutropha JMP134]
 gi|83305877|sp|Q46ZI4|SYH_RALEJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|72119186|gb|AAZ61449.1| histidyl-tRNA synthetase [Ralstonia eutropha JMP134]
          Length = 456

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 64/424 (15%), Positives = 111/424 (26%), Gaps = 25/424 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      ++     R      G  ++  P ++   L+V   G   D   KEM  
Sbjct: 30  GMNDMLPADAPLWEHFENAARAMLRAYGYQQIRTPIVEHTQLFVRGIGEVTDIVEKEMYS 89

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   +     FR E   R    R R+F
Sbjct: 90  FTDALNGEQLTLRPEGTAAAVRATIEHNLLYDGPKRLWYTGPMFRHERPQRG---RYRQF 146

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
               A +              M           G++                 E I   +
Sbjct: 147 HQLGAEALGFAGPDVDAEIILMCQRLWDDLGLTGVRLEINSLGQAHERAAHREELIKYLE 206

Query: 216 --TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                      +     P+   +T    +  + +   +        S  H E +   L  
Sbjct: 207 GFKDILDEDGKRRLYTNPLRVLDTKNPALQEMAANAPKLIDFLGEESLAHFEGVQRLLKA 266

Query: 274 NKRVSA------RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           N           RG++  ++  F       + A    A G  +   +   G  A      
Sbjct: 267 NNIPYKINPRLVRGLDYYNLTVFEWITDK-LGAQGTIAGGGRYDPLIAQMGGKAAPACGW 325

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW----DD 383
            +      + I     V       + +    +  +        RL   G DV      D 
Sbjct: 326 AMGIERIIELIREEGVVPDAVGCDVYLVHQGEAAQQQATVAAERLRDAGLDVVLHATPDG 385

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-------TGIREDMSLEEVIN 436
                 SQ   AD  G    VI+G   V+   V++K           G +  +  E +++
Sbjct: 386 KSGSFKSQMKRADASGAAYAVIIGEDEVAAGVVQVKELRQGAQAEGGGQQAQVPAENLVD 445

Query: 437 YASH 440
           Y   
Sbjct: 446 YLID 449


>gi|293336836|ref|NP_001169639.1| hypothetical protein LOC100383520 [Zea mays]
 gi|224030583|gb|ACN34367.1| unknown [Zea mays]
          Length = 692

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 81/292 (27%), Gaps = 28/292 (9%)

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                   +         +     +         +    +   +      +F    +  +
Sbjct: 394 NEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLKAHTDKSGVPLVAHEKFSKPREVEK 453

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
             +  SK  +            +  +L ++ E+      A  +   E  F      K V 
Sbjct: 454 LVIVPSKKDLGLAFKGNQKMVLE--ALEAMSEKEAFEMKAELETKGETNFKVCTLGKDVV 511

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                        TK  + +S   K    +     +     G  R++  + E S   +  
Sbjct: 512 I------------TKKMVSISMEKKLEHQRVFTPSVVEPSFGIGRIIYCLFEHSFYTRPS 559

Query: 339 IWPDSV---APFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              +       F   +  IK        +Q   DA + I   L+  G     D     IG
Sbjct: 560 KSEEEQLNVFRFPPLVAPIKCTVFPLVKNQEFDDAAKVIAKALTTAGISHIIDTTAISIG 619

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            ++A  D +G P  V V S       V I+ R +  +  + ++EV       
Sbjct: 620 RRYARTDEIGVPFAVTVDSAT----NVTIRERDSKEQVRVDIDEVAPVVKQL 667



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAI 67
           +E  R A + + +  L    +  I++   G+Y + P G +   NV +  R+        +
Sbjct: 75  REELRQAVVNTLERKLFYIPSFKIYRGVAGLYDYGPPGCRVKANVLSFWRQHFVLEENML 134

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
           E+  P +    +   SG  + +   M++  ++           ++  
Sbjct: 135 EVDCPCVTPEVVLKASGHVEKFTDLMVKD-EKTGTCYRADHLLKDFC 180


>gi|162447682|ref|YP_001620814.1| histidyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
 gi|189082283|sp|A9NGF8|SYH_ACHLI RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|161985789|gb|ABX81438.1| histidyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
          Length = 420

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 61/424 (14%), Positives = 129/424 (30%), Gaps = 30/424 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G Y  LP   +    + + +R+        E+  P ++ +++   E+   D   KE    
Sbjct: 8   GTYDVLPTEAENWVALESYVRKLFKTYNYGEIRTPMMEYSNVIHRETELSDMVIKETYNF 67

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D++D+ +   P     +   +  +    +      Y +   FR E   +    R R+F+
Sbjct: 68  KDKSDRDLTLRPEGTAGVIRSYVENKLYAQAGVTKLYYMGPNFRYERPQKG---RFRQFM 124

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD- 215
                                        +RLGLK + ++  S       ++    L D 
Sbjct: 125 QFGCEVLGSNEPSIDAEV---IELAYETIYRLGLKQVSVKLNSLGDDASKANYRQALIDF 181

Query: 216 ----TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 +            P+   ++     I L             TS  H + + + L
Sbjct: 182 LTPVKDKLSKDSQDRLTHNPLRILDSKDTADIELIKNAPLPLDYLNETSKQHFDSVLELL 241

Query: 272 P------ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                  E  R   RG++     +F          +    G  G+   +     G     
Sbjct: 242 NLMNIPYEIDRKLVRGLDYYAHTVFEIHATIKGFGAQNALGGGGRYQNLVKELGGPDTPG 301

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD- 382
           +  A               ++   K   +     DQ  R    ++   L         D 
Sbjct: 302 IGYAFGMERLLSALEQEGITLTSPKQLDVYFITFDQQSRKKAIQLQHILRSENILSDIDH 361

Query: 383 -DMGEQIGSQFAVA---DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            + G +   Q   A   D       +I+G   ++++ V++K+  T  + ++S++ +++  
Sbjct: 362 LNRGFKP--QLKEALRYDSK---FIIIIGENELNNNVVQLKNTKTEEQVEVSMDTLLDTL 416

Query: 439 SHRF 442
               
Sbjct: 417 KELL 420


>gi|296414076|ref|XP_002836729.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295631567|emb|CAZ80920.1| unnamed protein product [Tuber melanosporum]
          Length = 609

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/379 (15%), Positives = 115/379 (30%), Gaps = 46/379 (12%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T +       + +  +   +PF    I   FR+E+ PR G++R+   + K     
Sbjct: 216 YLRPETAQGQFLTFNKLYEFNNLRMPFASASIGKSFRNEISPRSGLLRTT-IVEKTIGEA 274

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                    +              LG+    +R          +      AD  + ++F 
Sbjct: 275 VKEGIVDNETLGYFLARIHLFLKELGVDQEKVRF----RQHMPNEMAHYAADCWDAELFT 330

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTA-----PYAATSDVHNEKLFDSLPENKRVS 278
           S  +++    ++ + +D  +  +   EQ        P     +   +     L    R  
Sbjct: 331 SYGWIECVGCADRSAYDLTVHSSRTGEQLVVRETLEPPKVWEEWDMDVDKKWLGPKFRKD 390

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG----------------------- 315
           A+ IE        ++ +    A+ +   GK      G                       
Sbjct: 391 AKKIEEAVA--RISQGAREKLASVQKDGGKVFIEVEGLGSVELEKVTIAKNKKAVNIREY 448

Query: 316 -----SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDA 364
                    G  R+  ++IE  +  +       V  F   +   K      +        
Sbjct: 449 TPNVIEPSFGIGRIFYSLIEHIYWSRPGDEARGVLSFPPKIAPTKILIVPLSGHSDFAPI 508

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              + A++ + G     D+    IG ++A  D LG P  V V  + + D  + ++ R   
Sbjct: 509 VTALSAKIRRAGISNRVDNSSATIGKRYARNDELGTPFGVTVDFQSLKDGTITLRERDGM 568

Query: 425 IREDMSLEEVINYASHRFS 443
            +   + +EVI   S    
Sbjct: 569 KQVRGTQDEVIETVSQILD 587



 Score = 47.8 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     N+    R+   +    +E+    L   D+   SG  D +   M +
Sbjct: 36 SGLYDYGPPGCSLQANIVDAWRKHFVHEEDMLEVDCTMLTPNDVLKTSGHVDKFADWMCK 95


>gi|148984420|ref|ZP_01817708.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|147923197|gb|EDK74311.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301800869|emb|CBW33526.1| histidyl-tRNA synthetase [Streptococcus pneumoniae OXC141]
          Length = 429

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 119/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIVMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S L+ + E+    + A S +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQTHFDAVSQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESRQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|15790871|ref|NP_280695.1| histidyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|169236617|ref|YP_001689817.1| histidyl-tRNA synthetase [Halobacterium salinarum R1]
 gi|32130146|sp|Q9HNP5|SYH_HALSA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558683|sp|B0R6V2|SYH_HALS3 RecName: Full=Histidine--tRNA ligase
 gi|10581436|gb|AAG20175.1| histidyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|167727683|emb|CAP14471.1| histidine--tRNA ligase [Halobacterium salinarum R1]
          Length = 432

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 67/399 (16%), Positives = 119/399 (29%), Gaps = 40/399 (10%)

Query: 64  TGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
            G  E+  P ++  +++  +SG       E+    D+  + +   P     +  +  +  
Sbjct: 33  YGFREVGTPAMERTEMYVDKSG--AEIVDELYSFTDQGGRDVALTPELTPTVARMVVAKQ 90

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +   + P  +Y  +  +R E  P+ G  R  EF   +   F  +   +      +    L
Sbjct: 91  Q-ALSKPIKWYSSRPFWRYE-EPQQGRFR--EFYQTNLDIFGTSDPRADAEVLAVAADGL 146

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
                 G      R     I G L   F    DT E  +            +   D    
Sbjct: 147 TSLGLTGADFEF-RVSHRDILGGLLAAFDATVDT-EAAIRTVDKREKIERAAYLDDLAAA 204

Query: 243 ISLNSIVEQWTAP-----------YAATSDVHNEKLF-------------DSLPENKRVS 278
                  EQ+              +A T  V +                     +    +
Sbjct: 205 GLSYDQAEQFDDLLDGDDLDALVSFAGTDRVRDAVANLRNVLDAAETLGVRQYCDVSLTT 264

Query: 279 ARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           ARG++   G +F           A F G    D   + G     A+ V       +   +
Sbjct: 265 ARGLDYYTGVVFECFDSTGDVGRAVFGGGRYDDLIERFGGQPTPAVGVAPGHATLNLLLE 324

Query: 337 GIIWPDSVAPFK-ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                          ++ +   D    D      + L + G  V  D  G   G+Q   A
Sbjct: 325 NAGVLPDDEFTPDYYVLQVGDTDAEAADVA----SALRERGNRVDTDITGRSFGAQMNYA 380

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           D +G    VIVG + ++D  V IK+  +G +    +   
Sbjct: 381 DNVGADTVVIVGEQDLADGNVTIKNMASGEQTTAPIAAF 419


>gi|260913153|ref|ZP_05919635.1| histidine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260632740|gb|EEX50909.1| histidine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 423

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 65/415 (15%), Positives = 125/415 (30%), Gaps = 33/415 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               V   +R      G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWVEGKVRSVLQNYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y      +Y +   FR E   +    R R+F       F + 
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNQEQRLWY-MGPMFRHERPQKG---RYRQFHQAGVEVFGIP 135

Query: 167 PEGSKHS----YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DT 216
                        +++       H     +     E+         EF+         + 
Sbjct: 136 NPEIDAELIILTARLWKELGIFEHVTLQLNSIGSLEARKNYRSALVEFLQQHVDLLSDEE 195

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA------TSDVHNEKLFDS 270
            E         +D    +     ++   L   ++  +  + A       +     ++   
Sbjct: 196 KERLEKNPLRILDTKNQALQEVLNEAPKLLDYLDDDSREHFAQLCSLLDAIGIQYEVNPK 255

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAV 328
           L        + +        G + ++     + G       H      + +G  R+V  V
Sbjct: 256 LVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHSTTGVGFAMGLERLVLLV 315

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E + D       D    ++     +           E + + LS     V     G   
Sbjct: 316 QEVNKDILLPSAVDIYVVYQGEGTTL-----AAFRLAETLRSELS--HLRVMTHCSGGNF 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
             QF  AD  G  L +++G   V + +V +KH L G  ++ ++L E++ Y  +  
Sbjct: 369 KKQFKRADKSGATLALVIGESEVQNQQVVVKHLLNGAEQQTIALSEIVAYIKNNL 423


>gi|320547659|ref|ZP_08041944.1| histidine--tRNA ligase [Streptococcus equinus ATCC 9812]
 gi|320447734|gb|EFW88492.1| histidine--tRNA ligase [Streptococcus equinus ATCC 9812]
          Length = 425

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 62/409 (15%), Positives = 110/409 (26%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V A+ RE   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEAVARETFKKYNYSEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   F  +         P   Y I   FR E        R REF       F  
Sbjct: 80  PEGTAPVVRSFVENKLFAPEVQKPVKMYYIGSMFRYERPQAG---RLREFHQVGVECFGS 136

Query: 165 LTPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             P     +                    + LG  +         I         + AD+
Sbjct: 137 ANPATDVETIAMAYQLFQTLGIKDVTLHLNTLGSAASRAAYRQALIDYLTPMRDKLSADS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A  ++ +      + +  
Sbjct: 197 QRRLDENPLRVLDSKEKEDKVAVENAPSILDYLDEESQAHFDAVREMLDTLNIPYVIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T            A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITTVDKSDLT--ICAGGRYDSLVEYFDGPETPGFGFGLGIERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   K     I    Q        +   +   G     D +G +I +QF  A
Sbjct: 315 ILEKQGIELPVEKEMDTYIAVLGQGANIKALGLVQAIRNQGFSAERDYLGRKIKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D       + +G   +   +V +K+  T      S  E+ +      + 
Sbjct: 375 DAFNAKTIITLGESEIEAGQVTVKNNKTREEVSASFAEIESNFGEILAK 423


>gi|253567819|ref|ZP_04845230.1| threonyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|251841892|gb|EES69972.1| threonyl-tRNA synthetase [Bacteroides sp. 1_1_6]
          Length = 82

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 29/73 (39%)

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L         DD  E+IG +    ++   P  +IVG K   + +V ++ +  G +  M  
Sbjct: 5   LKMHEIRAIVDDRNEKIGRKIRDNEMKRIPYMLIVGEKEAENGEVSVRRQGEGDKGTMKY 64

Query: 432 EEVINYASHRFSN 444
           EE     +    N
Sbjct: 65  EEFAKILNEEVQN 77


>gi|222628790|gb|EEE60922.1| hypothetical protein OsJ_14640 [Oryza sativa Japonica Group]
          Length = 591

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 98/360 (27%), Gaps = 24/360 (6%)

Query: 96  LADRNDKAMIYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D++          E  M     +   KS   L       +    +E     G    R 
Sbjct: 210 PEDKSHPKFRDVSDLEFFMFPREQQLTGKSAMKLNIGQAVSEGTVNNE---TLGYFIGRV 266

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           +L       D      +         Y        ++      E   I    +++    +
Sbjct: 267 YLFLTQLGIDKDRLRFRQHLPNEMAHYAADCWDAEIECSFGWIECVGIADRSAYDLRAHS 326

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           D     +   + F +     +         L    +          +  +E    +L   
Sbjct: 327 DKSGVALEAHEKFAEPREVEKLVITPSKKELGLAFKGNQRMVLEALEAMSETE--ALNMK 384

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKG-----ADGKDHYVQMGSYGIGAMRVVAAVI 329
             + ++G     +   G   ++  S             +     +     G  R++  + 
Sbjct: 385 SALESKGEVEFKVCTLGKDVTIKKSMVSINMEKKKEHQRKFTPSVIEPSFGIGRIIYCLF 444

Query: 330 ESSHDGKG---IIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVF 380
           E     +         +V  F   +  IK         +      +KI   L+  G    
Sbjct: 445 EHCFYQRPGKAEDEQLNVFGFPPLVAPIKCTVFPLVKIEKFEVVAKKISKALTAAGISHI 504

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D  G  IG ++A  D +G PL + V +       V ++ R +  +  + ++EV +    
Sbjct: 505 IDMTGNTIGKRYARTDEIGVPLAITVDNTT----SVTVRDRDSKDQIRVEVDEVASVVKE 560



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     NV A  R+      G +E+  P +    +   SG  D +   M++
Sbjct: 43  AGLYDYGPPGCAVKANVLAFWRQHFVLEEGMLEVDCPCVTPEVVLKASGHVDKFTDLMVK 102

Query: 96  LADRNDKAMIYGPTHEEVM 114
             ++           ++  
Sbjct: 103 D-EKTGTCYRADHLLKDFC 120


>gi|145246120|ref|XP_001395309.1| glycyl-tRNA synthetase 1 [Aspergillus niger CBS 513.88]
 gi|134080022|emb|CAK41069.1| unnamed protein product [Aspergillus niger]
          Length = 667

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
            + +++   +     G  R+  +++E  +  +       V    IS+   K      +  
Sbjct: 501 ENIREYIPNVIEPSFGFGRIFYSLLEHVYWHRANDPARGVLSLPISVAPTKVLIVPLSTH 560

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           Q      ++I   L ++G     D+    IG ++A  D LG PL + +    V D  + +
Sbjct: 561 QDFVPITKRITEDLRELGISCRADESSASIGKRYARNDELGIPLGITIDFDSVKDGTITL 620

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R +  +   S EE++       S
Sbjct: 621 RERDSTKQVRASKEEILGAIESLIS 645



 Score = 51.3 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           G+Y + P G     N+  + R+    +   +E+    L   +++  SG  D +   M + 
Sbjct: 46  GLYDYGPPGCALQSNIVDLWRKHFVLQEDMLELDCTILTPEEVFKTSGHVDKFEDWMCKD 105

Query: 97  ADRNDK 102
             + D 
Sbjct: 106 FKKGDF 111


>gi|115477547|ref|NP_001062369.1| Os08g0538000 [Oryza sativa Japonica Group]
 gi|38175549|dbj|BAD01242.1| putative glycyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|113624338|dbj|BAF24283.1| Os08g0538000 [Oryza sativa Japonica Group]
 gi|125562356|gb|EAZ07804.1| hypothetical protein OsI_30061 [Oryza sativa Indica Group]
 gi|125604166|gb|EAZ43491.1| hypothetical protein OsJ_28106 [Oryza sativa Japonica Group]
          Length = 698

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 83/292 (28%), Gaps = 28/292 (9%)

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                   +         +     +         +   ++   +      +F    +  +
Sbjct: 400 NEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHSDKSGVPLVAHEKFSKPREVEK 459

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
             +  SK  +            +  +L ++ E+      A  +   E  F      K V 
Sbjct: 460 LVIVPSKKDLGLAFKGNQKMVVE--ALEAMSEKEAMDMKAALESKGETNFQVCTLGKDVV 517

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                        TK  + +S   K    +     +     G  R++  + E S   +  
Sbjct: 518 I------------TKKMVSISMEKKLEHQRVFTPSVIEPSFGIGRIIYCLFEHSFYTRPS 565

Query: 339 IWPDSV---APFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              +       F   +  IK        +Q   DA + I   L+  G     D     IG
Sbjct: 566 KSEEEQLNVFRFPPIVAPIKCTVFPLVKNQEFDDAAKVIDKALTTAGISHIIDTTAISIG 625

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            ++A  D +G P  V V S       V I+ R +  +  + ++EV +     
Sbjct: 626 RRYARTDEIGVPFAVTVDSAT----SVTIRERDSKEQIRVGIDEVASVVKQL 673



 Score = 54.0 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAI 67
           +E  R A + + +  L    +  I++   G+Y + P G     NV A  R+        +
Sbjct: 81  REEMRQAVVNTLERKLFYIPSFKIYRGVAGLYDYGPPGCAVKANVLAFWRQHFVLEENML 140

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
           E+  P +    +   SG  + +   M++  ++           ++  
Sbjct: 141 EVDCPCVTPEVVLKASGHVEKFTDLMVKD-EKTGTCYRADHLLKDHC 186


>gi|299067267|emb|CBJ38464.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) [Ralstonia
           solanacearum CMR15]
          Length = 440

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/425 (12%), Positives = 100/425 (23%), Gaps = 30/425 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      ++ +  +R      G  ++  P ++   L+V   G   D   KEM  
Sbjct: 17  GMNDLLPGDAPLWEHFDNAVRSMLRAYGYQQIRTPIVEQTQLFVRGIGEVTDIVEKEMYS 76

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMR 151
             D  +   +                     + P   +     FR E   R         
Sbjct: 77  FTDALNGEQLTMRPEGTAAAVRAVIEHNLLYDGPKRLWYTGPMFRHERPQRGRYRQFHQV 136

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             E L       D                         L     RA            F 
Sbjct: 137 GVEALGFAGPDIDAEVILMCQRLWDDLGLVGLKLELNSLGQAEERAAHRADLIKYLEGFQ 196

Query: 212 VLADTGETQVFCSKDF--MDFPIPSENTD------FDDIISLNSIVEQWTAPYAATSDVH 263
            + D    +   +     +D   P+            D +   S            ++  
Sbjct: 197 DILDEDSKRRLYTNPLRVLDTKNPALQEMAAGAPKLIDYLGDESRRHFEGVQALLKANNI 256

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L          +        G + ++     +     +       + G     
Sbjct: 257 PYMINPRLVRGLDYYNLTVFEWTTDKLGAQGTVAGGGRYDPLIEQIGGKPAPACGWAMGV 316

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW-- 381
                +                   + +++     QV          RL   G DV    
Sbjct: 317 ERIIELLR-----EENLAPEPQGCDVYIVHQGDQAQVQALVA---AERLRDAGLDVILHC 368

Query: 382 --DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSLEEVI 435
             +       SQF  AD  G    VI+G   V+    ++K          ++ +  ++++
Sbjct: 369 SPEGRNGSFKSQFKRADASGASYAVIIGDDEVAAGVAQLKPLRGDPSADAQQTVPADQLV 428

Query: 436 NYASH 440
           +    
Sbjct: 429 DRLID 433


>gi|238926285|ref|ZP_04658045.1| histidine--tRNA ligase [Selenomonas flueggei ATCC 43531]
 gi|238885965|gb|EEQ49603.1| histidine--tRNA ligase [Selenomonas flueggei ATCC 43531]
          Length = 421

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/409 (13%), Positives = 114/409 (27%), Gaps = 9/409 (2%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP    A  +V  +IR+   R G  E+  P  +  +L+        D   KEM   +DR 
Sbjct: 13  LPDAVGAWTHVEHVIRDLCARYGYGEIRTPMFEHTELFQRGIGDGTDVVDKEMYTFSDRG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           D+++   P +       +  +           + I   FR +      +    +F ++  
Sbjct: 73  DRSLTLRPENTASAVRAYLQNKLYADGGLQKLFYIGSMFRYDRPQAGRMREFHQFGVEAL 132

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
                  +         F++ L +       +        P+  +    +          
Sbjct: 133 GEESPALDAEVILLAYDFLTVLGLTGLTLKLNSVGCPACRPVYRERLQAYFKEYLPTLCD 192

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------EN 274
             C   +   P+   +   D      +     T         H E++   L       E 
Sbjct: 193 D-CKDRYTRSPLRILDCKRDAEQPFMAGAPAITDCLCPACTEHFEQVQQHLTAAGVSYEL 251

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                RG++      F   Y    + +     G+   +     G     V  A       
Sbjct: 252 DPRLVRGLDYYTRTAFEIAYPPLGAQSAVAGGGRYDGLVEELGGNPTPAVGFAAGLERVL 311

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                          + + + A       A   +   L   G     D  G  + +Q   
Sbjct: 312 LALEQQNLLPVQPPAADVFLIALGDAAAKAAFPLLHELRHGGVRALMDYAGRSMKAQMKQ 371

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           A+  G    VI+G   ++     ++      +E  +L++++        
Sbjct: 372 ANRSGARYAVILGEDELAAHTALVRDMAESAQETCALDDLVEKMISEVK 420


>gi|255321136|ref|ZP_05362302.1| histidyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262380175|ref|ZP_06073330.1| histidyl-tRNA synthetase [Acinetobacter radioresistens SH164]
 gi|255301690|gb|EET80941.1| histidyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262298369|gb|EEY86283.1| histidyl-tRNA synthetase [Acinetobacter radioresistens SH164]
          Length = 431

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/426 (9%), Positives = 111/426 (26%), Gaps = 23/426 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    A   +   +    +  G  ++ +P ++  +L+  S     D   KEM  
Sbjct: 9   GFNDILPAQTPAWRRLEQHLLSLMDAYGYQQIRLPIVEQTNLFKRSIGDATDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D+ +         E     +         R      + I   FR E   +    +  +
Sbjct: 69  FLDKGNPPESLTLRPEGTAGCVRAMLEHNLLRGATPRVWYIGPMFRYEKPQKGRYRQFHQ 128

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVL 213
           F ++         +             + +  ++ L+ +    A+           F+  
Sbjct: 129 FGVETFGVATPDMDAELILMTARLWKRMGVAEKVQLELNTLGEADERAAYRAALVGFLES 188

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN--------- 264
               +      +     P+   ++      S+     +        +  H          
Sbjct: 189 H-KADLDEDSQRRLTTNPLRILDSKDAKTQSILENAPKLHDFMGEETLAHFNLLQQYLTD 247

Query: 265 ----EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 +   L        + +      + G++ ++     +    G+       S    
Sbjct: 248 AGISFVINQKLVRGLDYYNKTVFEWTTTHLGSQGTVCAGGRYDSLVGQLKGKADQSVPAV 307

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CD 378
              +    +    +              +          +     E+   +         
Sbjct: 308 GFAMGMERLLLLLEQVEDNTAVRDCEIFLLAEPAYQGKALVM--AEQFRNQFEAANSPFR 365

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +        + SQ   AD  G    VI+G +   + K+ +K      + ++ ++ +  Y 
Sbjct: 366 LKT-GSQGSMKSQMKKADQSGAIFAVILGQREWENRKLTVKRLENAEQVEVEIDNLTPYL 424

Query: 439 SHRFSN 444
             + ++
Sbjct: 425 IEQLAS 430


>gi|160915140|ref|ZP_02077353.1| hypothetical protein EUBDOL_01148 [Eubacterium dolichum DSM 3991]
 gi|158432939|gb|EDP11228.1| hypothetical protein EUBDOL_01148 [Eubacterium dolichum DSM 3991]
          Length = 483

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 65/449 (14%), Positives = 137/449 (30%), Gaps = 27/449 (6%)

Query: 14  NPRDA---EIASHK----LMLRTGM-IH------QHSKGIYSWLPLGQKALDNVNAIIRE 59
             ++    E+  H+    L++R    I       Q  KG    LP        +  +IR+
Sbjct: 15  TKKEHLISEVRWHRVFNVLIVRAFFYIRRDFMSYQVPKGTQDILPSEIGKWHRLEELIRQ 74

Query: 60  EQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDI 117
                   E+  P  +  +++       D   KEM     + +  ++   P     +   
Sbjct: 75  FCYVYNYKEIRTPIFEHTNVFKRGNDSSDMVNKEMYTFQLENSATSLTLRPEGTAGVARA 134

Query: 118 FRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNK 176
           F  H      +LP   Y +  +FR E   +  +    +F ++   +     +    +   
Sbjct: 135 FVEHKLYGNADLPMKMYYVGPQFRHERPQKGRMRIFNQFGVEVIGAKSAMLDVEAIALGW 194

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
            FVS L +     L +      S         E    AD       C + +   P+   +
Sbjct: 195 SFVSALGLQDMKVLINTLGDDASRAAYRKALKE-HFKADIDTMCADCKRRYEQNPLRILD 253

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLF---DSLP-----ENKRVSARGIEVGHIF 288
              D    +   V +        S  + +++    D+L      +++ V         +F
Sbjct: 254 CKVDKDKDIMKNVPRMADYLNEESKAYFDEVLAGLDALGIPYEVDDRLVRGLDYYTHTVF 313

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV-AAVIESSHDGKGIIWPDSVAPF 347
              +      + +   A G+   +     G  +M  +  A+               +A  
Sbjct: 314 EVVSVNKEMGAQSTVFAGGRYDGLVEYFGGPTSMSGIGWAMGLERLILACEAEGIELADE 373

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +     +       R    ++  +L   G     D +     +QF           ++VG
Sbjct: 374 ESLDAYVVCLSSSVRKQVLQLVTQLRAAGYSTDTDYLDRSFKAQFKTVARTRAKAAIVVG 433

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
              +    V IK      + ++ LE+++ 
Sbjct: 434 EDDIEKGSVTIKRVADQKKLEVKLEDIVE 462


>gi|332358852|gb|EGJ36674.1| histidine--tRNA ligase [Streptococcus sanguinis SK1056]
          Length = 426

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/402 (14%), Positives = 115/402 (28%), Gaps = 25/402 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEDFARKTFRKYNYGEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
           +   +     +M     + F  +G+ ++ +   S       +                  
Sbjct: 137 SNPATD---VEMIAMAAQFFKDIGITNVSLELNSLGNPESRAAYRQALIDYLTPLKPSLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D   P +    +   S+   +++ ++ Y A      E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEPEDKAAVEGAPSILDYLDEESSAYFAAVRSMLEILQIPYVI 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               V         IF F T+ +         A G+   +     G     V   +    
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLT--ICAGGRYDGLVAYFGGPETPGVGFGMGLER 311

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      +       + +            ++   L   G     D +  ++ +QF
Sbjct: 312 LLLVLDKQGVELPIETALDVYVAVLGPGANGRALELVQALRTQGFAAERDYLDRKLKAQF 371

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             AD       + +G   V   +V +K+        +SL+++
Sbjct: 372 KSADSFKAKTLITLGESEVESGQVTVKNNHNREEITVSLDQI 413


>gi|225857695|ref|YP_002739206.1| histidyl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|254782351|sp|C1CNA0|SYH_STRZP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|225726000|gb|ACO21852.1| histidyl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|332071392|gb|EGI81886.1| histidyl-tRNA synthetase [Streptococcus pneumoniae GA41301]
          Length = 429

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 119/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRAYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIVMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S L+ + E+    + A S +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQTHFDAVSQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESRQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|195378418|ref|XP_002047981.1| GJ13721 [Drosophila virilis]
 gi|194155139|gb|EDW70323.1| GJ13721 [Drosophila virilis]
          Length = 679

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/305 (12%), Positives = 86/305 (28%), Gaps = 22/305 (7%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
              Y   +             + + +              ++  +      E +  AD  
Sbjct: 352 LGYYMARIQQFLHAIGIKPECLRFRQHMGNEMAHYACDCWDAEILTSYGWVECVGCADRS 411

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
              +          + +E           S +         T     + + D+L +    
Sbjct: 412 AYDLSQHTAATGVRLVAEKRLPAPKTVEVSEIVPNKQALGKTFKKEAKAITDALAKLSLD 471

Query: 278 SARGIE--------------VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +E               G     G +      AT K    ++    +     G  R
Sbjct: 472 DIKQVEAQLATGGPYKLTLPDGATHELGAETIGVKHAT-KTVHVEEFIPSVVEPSFGIGR 530

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGC 377
           ++ A++E S   +              +  +K      +++   +   +++ A L+K   
Sbjct: 531 IMYALLEHSFQCRDGDEQRCYFTLPPLVAPLKCSILPLSNNAEFQPYTQQLSAALTKAEL 590

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVIN 436
               DD    IG ++A  D +  P  + V    + +   V ++ R T  +  + L+ V+ 
Sbjct: 591 SHKVDDSSGSIGRRYARTDEIAIPYGITVDFDTLKEPHTVTLRDRNTMKQVRIGLDVVVG 650

Query: 437 YASHR 441
                
Sbjct: 651 VVKDL 655



 Score = 41.3 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+ A+ R+  +     +E+    L   
Sbjct: 73  LLKRRFFYDQSFAIYGGITGQYDFGPMGCALKSNILALWRQFFSLEEQMLEVDCSMLTPE 132

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  + +   M++     + 
Sbjct: 133 PVLKASGHVERFADLMVKDVKTGEC 157


>gi|14520768|ref|NP_126243.1| glycyl-tRNA synthetase [Pyrococcus abyssi GE5]
 gi|11387156|sp|Q9V176|SYG_PYRAB RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|5457984|emb|CAB49474.1| glyS glycyl-tRNA synthetase [Pyrococcus abyssi GE5]
          Length = 571

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 68/428 (15%), Positives = 134/428 (31%), Gaps = 73/428 (17%)

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           Y +   E      ++ KA +   T + +  +  R +  +   LPF  +QI   +R+E+ P
Sbjct: 143 YFNLMFETYIGPYKDKKAYLRPETAQGIFVNFKRLNAFARNKLPFGVFQIGKAYRNEISP 202

Query: 146 RFGVMRSREFLMKDAYSF---------DLTPEGSKHSYNKMFVS---------------- 180
           R G++R REF   +   F                +        +                
Sbjct: 203 RQGMIRLREFTQAEVEIFFNPNETEHPHFDEVKHEKLRLYPIENQLKDLGMIELTAEEAV 262

Query: 181 ---YLRIFHRLGLKSIPMRAESGPIGGDLSHEF---------IVLADTGETQVFCSKDFM 228
              YL          +  +        +    F            ADT + +V+  +   
Sbjct: 263 KKGYLMNTFFAYYLVMIKKILLDIGIPEDKIRFRQQLPEERAHYSADTWDAEVYSERFGW 322

Query: 229 -DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--------------- 272
            +    +  TD+D    +       T           ++L  SL                
Sbjct: 323 VECVGLAYRTDYDLSRHMKMSGADLTVMIHYDKPKIVKRLKVSLNMKSVGPKLKKDAKRI 382

Query: 273 ----------ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD---GKDHYVQMGSYGI 319
                     E + +  +  E G I   G + S       +  +   G+     +     
Sbjct: 383 NEKIQAMSEEELRELVKKLNEEGKIVIDGYELSKDDFIIKEVEEKVTGEKIIPHVLEPSF 442

Query: 320 GAMRVVAAVIESSHD-----GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G  R    ++E+S          +     +AP +++++ + A  +        ++ +L K
Sbjct: 443 GIDRPFYLLLENSLTIDEDGRIYLKIKKDMAPIEVAVLPLVAK-EPLTKIAYDLFRKLQK 501

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G  V +D+    IG ++   D +G P  V + ++   D  V I+ R T  +  + LE+V
Sbjct: 502 EGFIVVYDEKD-SIGKRYMRYDEIGTPYCVTIDNQTPIDGTVTIRDRDTREQIRVKLEDV 560

Query: 435 INYASHRF 442
                   
Sbjct: 561 PRKLKELI 568



 Score = 67.1 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 51/158 (32%), Gaps = 14/158 (8%)

Query: 23  HKLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS 76
             LM R G       I+  S+G Y + PLG      +   IRE   R G  E+  P +  
Sbjct: 12  QDLMRRRGFAWGSFEIYGGSRGFYDYGPLGATIKRKIEKKIREAFIREGFFEIETPDITP 71

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
             +++ SG  + +   ++                EE  T       KS   +     +  
Sbjct: 72  EQVFIASGHVEKFVDPIVECKKC-GARFRADHLIEE--TLGIDVEGKSAEEMTKIIREHN 128

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSY 174
           +K      P  G      F     +   + P   K +Y
Sbjct: 129 IKC-----PECGGELGDVFYFNLMFETYIGPYKDKKAY 161


>gi|332291587|ref|YP_004430196.1| glycyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169673|gb|AEE18928.1| glycyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 511

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 85/253 (33%), Gaps = 16/253 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       GE   +  + + +  +    +      +      +  A YA  
Sbjct: 260 FRMREFEQMEMQFFVRPGEEMKWY-EHWKETRLKWHKSLGLGEENYRFHDHEKLAHYANA 318

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +            E + + +R            ++S      F     + +   +    I
Sbjct: 319 ATDIEFNFPFGFKELEGIHSRTDFDLKAHE---EHSGKKLQFFDPELNESYVPYVVETSI 375

Query: 320 GAMRVVAAV---------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R+  AV         +E+      +  P  +AP K +++ +   D    +  +KI  
Sbjct: 376 GLDRMFLAVFSASLQDEELENGTSRVVLKLPAILAPVKAAILPLVKKD-GLPEVAQKIID 434

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L      V +D+    +G ++   D  G PL + V    + D+ V ++ R T  ++ + 
Sbjct: 435 DLK-YDYRVAYDEKDA-VGRRYRRQDAAGTPLCITVDHDTLEDNMVTVRDRDTMEQQRVL 492

Query: 431 LEEVINYASHRFS 443
           + ++ +  + + +
Sbjct: 493 ITDLPDILNKKVN 505


>gi|284054154|ref|ZP_06384364.1| histidyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 392

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/380 (15%), Positives = 104/380 (27%), Gaps = 21/380 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V ++  E   R    E+  P  +   L+        D  GKEM    DR D+++   
Sbjct: 21  WQWVASVAEETLARGNYQEIRTPIFEPTALFERGIGEATDVVGKEMYTFCDRGDRSITLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +              + +   FR E        R R+F            
Sbjct: 81  PEGTAGVVRAYIERKLHANPGVQRLWYMGPMFRYERPQAG---RQRQFHQLGVEVLGSDD 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-----TGETQVF 222
             +      + V  L+    LG+ ++ +   S     D  +    L D     +GE    
Sbjct: 138 PRADVEVIAVAVDILKS---LGITNLHLNLNSVGDRTDRQNYRQALVDYLTPFSGELDQD 194

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--- 279
                   P+   ++  +    +              S  H E++   + E         
Sbjct: 195 SRDRLTRNPMRILDSKDERTQEITRNAPSILDYLGERSQSHFERVQYLIKELGISYTLNP 254

Query: 280 ---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F    S  + A      G  +   +   G G                
Sbjct: 255 RLVRGLDYYTHTAF-EIISDDLGAQATVCGGGRYDGLVQELG-GPSVPAVGWAIGLERLI 312

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            ++      P     + + +  +        +  +L + G  V  D  G     QF  AD
Sbjct: 313 ILLQQLHQPPQVTPQLYLVSRGEKAEANGLILAQKLRQAGLRVELDLSGSAFSKQFKRAD 372

Query: 397 LLGFPLQVIVGSKFVSDSKV 416
             G    +++G        V
Sbjct: 373 RSGAGACLVLGDAEAIAGTV 392


>gi|124026953|ref|YP_001012273.1| glycyl-tRNA synthetase [Hyperthermus butylicus DSM 5456]
 gi|123977647|gb|ABM79928.1| glycyl-tRNA synthetase [Hyperthermus butylicus DSM 5456]
          Length = 593

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 59/140 (42%), Gaps = 4/140 (2%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSH---DGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
           GK     +     G  R++   ++ +H   DG+ I+            +     D+    
Sbjct: 436 GKRFLPHVVEPSFGVERLLLVTLDYAHRERDGRTILSLPRYLAPIEVAVFPLTRDEKLVA 495

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             ++++  +   G    +DD    IG ++A  D +G P+ V V  + + D+ V ++ R T
Sbjct: 496 KAKEVFRIVLDAGFYPVYDD-DGSIGKRYARVDEIGVPVAVTVDYQTLEDNTVTLRDRDT 554

Query: 424 GIREDMSLEEVINYASHRFS 443
             +  +S++++++      +
Sbjct: 555 WKQVRVSIDKLVDALRRFLN 574



 Score = 56.3 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRTGA---IEMSVPTLQSADLWVESGRYDSYGK 91
           G Y   PLG +  + +  + R+   R  A   +E+  P +  + ++  SG  + +  
Sbjct: 32 AGFYDLGPLGVRLKEKILQLWRDFFIRRHAGFVVEIETPIIAPSRVFEASGHLEHFTD 89


>gi|15598997|ref|NP_252491.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|116051827|ref|YP_789330.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254236706|ref|ZP_04930029.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa C3719]
 gi|254242493|ref|ZP_04935815.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa 2192]
 gi|296387683|ref|ZP_06877158.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa PAb1]
 gi|313109220|ref|ZP_07795188.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
 gi|32130147|sp|Q9HXJ5|SYH_PSEAE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|122260974|sp|Q02RV6|SYH_PSEAB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|9949975|gb|AAG07189.1|AE004798_12 histidyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|115587048|gb|ABJ13063.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168637|gb|EAZ54148.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa C3719]
 gi|126195871|gb|EAZ59934.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa 2192]
 gi|310881690|gb|EFQ40284.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
          Length = 429

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/425 (12%), Positives = 111/425 (26%), Gaps = 26/425 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP    A   +        +  G  E+ +P L+  +L+        D   KEM  
Sbjct: 10  GMNDILPEQTPAWRYLERTFAGLLDGYGYSEIRLPILEFTELFARGIGEGTDVVDKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H  S        +     FR E +P+ G  R    
Sbjct: 70  FLDRNGESLTMRPEGTAGCVRAVLEHGLSGGGQVQKLWYTGPMFRYE-KPQKGRYRQFHQ 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS------HE 209
           +  + ++       ++       +             +     S               E
Sbjct: 129 IGVEVFNLPGPDIDAELIILTWRLWQKLGMADAVTLQLNTLGSSEARARYREALVAYLQE 188

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL----NSIVEQWTAPYAATSDVHNE 265
                D    +   +          E+T    + +         E         + +   
Sbjct: 189 RFEQLDEDSQRRMTTNPLRILDSKVESTQALLVGAPTLHDYLDEESIAHFEGLKARLDAV 248

Query: 266 ----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               ++   L        R          G + ++     + G   +         G   
Sbjct: 249 GLRYEINQKLVRGLDYYCRTAFEWVTDKLGAQGTVCGGGRYDGLVSQFGGKPTPGVGFAM 308

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDV 379
                 ++  +              +  +        +    A   +  +L     G  +
Sbjct: 309 GVERLVLLLETLGVIPAELNRPADLYVCAFG------EPAELAALTLAEQLRSAIPGIRL 362

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYA 438
             +       SQF  AD  G    +I+G   V++  V  K  R  G ++ ++ + +  + 
Sbjct: 363 LVNAGAGSFKSQFKKADKSGARFALILGEDEVANRVVGFKPLRDEGEQQSIAWDALPEHL 422

Query: 439 SHRFS 443
           +   +
Sbjct: 423 AACLA 427


>gi|313637739|gb|EFS03099.1| histidyl-tRNA synthetase [Listeria seeligeri FSL S4-171]
          Length = 427

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/427 (14%), Positives = 119/427 (27%), Gaps = 26/427 (6%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            + A            E+  P  +  +L+        D   KE
Sbjct: 3   LPRGTRDILPEEVTKWHFLEAAFAAVCENYQYEEIRTPIFEHTELFERGVGDSTDIVSKE 62

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +   F  H      + P      +  FR E        R
Sbjct: 63  MYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGAVSQPIKXXXNEPMFRYERPQGG---R 119

Query: 152 SREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL---- 206
            R+F            P       +     + RI  R     I    +            
Sbjct: 120 QRQFTQMGIEAIGSDDPAIDVEVISLAVEFFKRIGLRNIKLVINSLGDKESRLKHREALV 179

Query: 207 -SHEFIVLADTGETQVFCSKD---FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
              E  +     E QV   K+    +D     +N       S+   + + +  Y      
Sbjct: 180 SHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQTAPSILDYLNEESVAYFNQVQS 239

Query: 263 HNEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +   L  S  E      RG++      F   ++     + T     G+ H +     G  
Sbjct: 240 YLNALEISF-EIDPTMVRGLDYYNHTTFEIMSEEEGFGAKTTLCGGGRYHGLVKEFGGPD 298

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
              +   +               +   K   + +             +  +L K G    
Sbjct: 299 TPGIGFGIGVERILLALEKADVKIPAKKPLEVYVITAQPEAELKAVTLVNKLRKNGISAE 358

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D +  ++ +Q   A+       +I+G + +     ++K+  TG +E +  + +      
Sbjct: 359 KDYLKRKLKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEIVFEDTLETVLIE 418

Query: 441 RFSNNRP 447
           + +N + 
Sbjct: 419 KLTNTKE 425


>gi|312879711|ref|ZP_07739511.1| histidyl-tRNA synthetase [Aminomonas paucivorans DSM 12260]
 gi|310783002|gb|EFQ23400.1| histidyl-tRNA synthetase [Aminomonas paucivorans DSM 12260]
          Length = 419

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 112/409 (27%), Gaps = 33/409 (8%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  + R+  +  G  E+ +P  +  +L+        D   KEM    DR  +++   
Sbjct: 21  WAYVLKVCRDVADCFGYREVHLPVFEHTELFCRGIGDTTDVVEKEMYTFEDRGGRSITLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL-T 166
           P     M   +  H    ++ P   +     FR E   +    R R+F   D  +     
Sbjct: 81  PELTASMVRSYLEHDLRNQSQPAKLWSAGPMFRYERPQKG---RYRQFWQVDVEALGAAD 137

Query: 167 PEGSKHSYNKMFVSYLR-------------IFHRLGLKSIPM-RAESGPIGGDLSHEFIV 212
           P             Y R                          R    P    L      
Sbjct: 138 PLVDVEVIGFSLELYRRLGLANLEVVVNSVGCPACRPVYRQALRGYLEPRLPHLCESCRS 197

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS-L 271
             D    ++   K+  +    +E+    +        E + A  A    +      D  L
Sbjct: 198 RYDRNPLRILDCKNP-ECKAQTEDAPEIEGSLCPECREHFAALLAGLDRLGAAVQRDKRL 256

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVI 329
                   +          G + ++     +          +V    +  G  R+V  + 
Sbjct: 257 VRGLDYYTKTAYEILSGDLGAQNAVCGGGRYDNLAEAIGGPHVPGVGFASGIERIVLTM- 315

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                        S          + A +   R    ++  +L   G  V  D       
Sbjct: 316 --------ESQGRSFGEAPRLDAFVVAAEDEARGEASRLAHQLRAAGAAVDMDYAARSFK 367

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            Q   A   G     I+G K ++   V  K   TG +ED+S E++ +  
Sbjct: 368 GQMKAAGQSGARYACILGGKELARGVVACKDLGTGEQEDLSREDLKSRF 416


>gi|294629243|ref|ZP_06707803.1| glycyl-tRNA synthetase [Streptomyces sp. e14]
 gi|292832576|gb|EFF90925.1| glycyl-tRNA synthetase [Streptomyces sp. e14]
          Length = 439

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/419 (11%), Positives = 104/419 (24%), Gaps = 58/419 (13%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           + + PLG +  +N+          +R   + +    + + ++WV SG   ++   +    
Sbjct: 33  WDYGPLGVELKENLKRQWWRYMVTSREDVVGIDSSVILAPEVWVASGHVATFTDPLTECT 92

Query: 98  DRND----------KAMIYGPTHEEV----MTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
             +                G   E            +  +      F+          + 
Sbjct: 93  ACHKRFRADHLEEAYEEKKGHAPENGLADLNCPNCGNKGQFTEPKQFSGLLSTHLGPTQD 152

Query: 144 RPRFGVMR-------SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
                 +R          F      S    P G                           
Sbjct: 153 SGSVAYLRPETAQGIFTNFAQVQTTSRRKPPFGIAQMGKSFRNEITPGN----FIFRTRE 208

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
            E   +      EF V     E       +             +++       E+ +   
Sbjct: 209 FEQMEM------EFFVKPGEDEQWQEYWMEQRWNWYTGLGLREENMRWYEHPKEKLSHYS 262

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQM 314
             T+D+     F      +     G+     +  G   K S    + F    G+     +
Sbjct: 263 KRTADIEYRFQFGGSEWGELE---GVANRTDYDLGAHAKASGQDLSYFDQEAGERWTPYV 319

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK---------------AHDQ 359
                G  R + A +    D        +          ++               + + 
Sbjct: 320 IEPAAGVGRAMLAFLL---DAYVEDEAPNAKGKMEKRTVLRLDHRLAPVKVAVLPLSRNP 376

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                 + +   L +   ++ +DD G  IG ++   D +G P  V V    + D+ V +
Sbjct: 377 ELSPKAKGLAQALRQNW-NIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLEDNAVTV 433


>gi|261880499|ref|ZP_06006926.1| glycine-tRNA ligase [Prevotella bergensis DSM 17361]
 gi|270332838|gb|EFA43624.1| glycine-tRNA ligase [Prevotella bergensis DSM 17361]
          Length = 522

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 105/355 (29%), Gaps = 47/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM  L+D  +K  +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 198 FSTEMGSLSDATNKIYLRPETAQGIFVNYLNVQKTGRMKLPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           V R REF   +   F   P      +     + L     LG              G  ++
Sbjct: 258 VFRMREFEQMEMQFFCQ-PGSEMKWFEYWKKARLAWHEGLG-------------MGHENY 303

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            +             +      P                        +     +H+   +
Sbjct: 304 RYHDHDKLAHYANAATDIEFKMPF----------------------GFKEVEGIHSRTDY 341

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     K         G    +    +      +             S            
Sbjct: 342 DLSQHEK-------FSGRGIKYFDSDTEQSYVPYVVETSIGVDRMFLSVMC--HAYTEEQ 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P+++AP K ++  +   D    +   KI   L     +  + D  + I
Sbjct: 393 LENGDTRVVLRLPEALAPVKCAVFPLDKKD-GLPEIAHKIVDDLK-FHFNTHYGDPKDSI 450

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  V V     +D KV ++ R +  +E + + E+ +    R S
Sbjct: 451 GKRYRRQDAVGTPFCVTVDHDTPNDHKVTVRFRDSMEQERVDISELRSIIEDRVS 505


>gi|256272201|gb|EEU07196.1| Grs2p [Saccharomyces cerevisiae JAY291]
          Length = 618

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 83/283 (29%), Gaps = 20/283 (7%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF--------MDFPI 232
           + +              +   +      E +  AD     +                   
Sbjct: 319 FRQHLKNEMAHYATDCWDGEILTSYGWIECVGCADRAAFDLTVHSKKTGRSLTVKQKLDT 378

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV-----GHI 287
           P E T++   ++      ++         V ++   D L        +  E      G I
Sbjct: 379 PKERTEWVVEVNKKFFGSKFKQKAKLIESVLSKFSQDELIRRHEELEKNGEFTCQVNGQI 438

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
               +        T      +++   +    +G  R++  + +     +          F
Sbjct: 439 VKLDSSLVTIKMKTTL-QHIREYIPNVIEPSLGLGRIIYCIFDHCFQVRVDSESRGFFSF 497

Query: 348 KISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            + +  IK      +++       ++I   L K       DD    IG ++A  D LG P
Sbjct: 498 PLQIAPIKVFVTTISNNDGFPAILKRISQALRKREIYFKIDDSNTSIGKKYARNDELGTP 557

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + +  + + D  V ++ R +  +   ++ +VI+       N
Sbjct: 558 FGITIDFETIKDQTVTLRERNSMRQVRGTITDVISTIDKMLHN 600



 Score = 50.5 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G++   P G +  +N+  + RE        +++  P L   D+   SG  D +   M R
Sbjct: 33  SGLFDLGPPGCQLQNNLIRLWREHFIMEENMLQVDGPMLTPYDVLKTSGHVDKFTDWMCR 92

Query: 96  LADRNDKAMIYGPTHEE 112
              +  +        E+
Sbjct: 93  -NPKTGEYYRADHLIEQ 108


>gi|255292047|dbj|BAH90528.1| histidyl-tRNA synthetase [uncultured bacterium]
 gi|255292515|dbj|BAH89630.1| histidyl-tRNA synthetase [uncultured bacterium]
 gi|255293029|dbj|BAH90124.1| histidyl-tRNA synthetase [uncultured bacterium]
          Length = 428

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 118/429 (27%), Gaps = 41/429 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        V   +R    R G  E+ +P L+  +L+  + G   D   KEM  
Sbjct: 10  GMNDLLPAVTPRWHAVEQRLRVILERHGFAEVRLPLLEPTELFARTIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H      L   ++     FR E   R    R R+F
Sbjct: 70  FLDRNGDSLTLRPEGTAGAVRAGIEHGLFQGQL-LRWWYQGPMFRHERPQRG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
               A  F             M   +       GL+       S         E +    
Sbjct: 126 HQIGAECFGSAAPELDAELIAMTAQFWGALGLSGLRLELNSLGSRE-ARAAYRERLQDYL 184

Query: 216 TGETQVFCSK----------DFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHN 264
            G   +                +D   P+         SL   ++  +   +    ++  
Sbjct: 185 RGHFDLLDEDSRRRLDSNPLRILDSKNPALAQLIAGAPSLPDHLDAESREHFGRLCELLE 244

Query: 265 -----EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
                  +   L        R +        G + ++     +                +
Sbjct: 245 GLGVAYTVNPRLVRGLDYYGRTVFEWVTDALGAQGTVCAGGRYDALVEQLGGRPTPAIGF 304

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            +G  R++  +  S  D         V                CR     +   L   G 
Sbjct: 305 ALGLERLIELLAVSGLDPVVPHRIWYVVSTPGP----------CRAQALGLAQSLR-AGA 353

Query: 378 ---DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI--REDMSLE 432
               V  D  G   G Q   AD  G  + +I+G + +++  V ++        ++ + L+
Sbjct: 354 QAPTVLVDHAGGSFGKQMQRADKAGADVALILGEEELAEGSVTVRLLRASEPTQQRVPLD 413

Query: 433 EVINYASHR 441
            V+   +  
Sbjct: 414 AVVATVARL 422


>gi|94987428|ref|YP_595361.1| histidyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731677|emb|CAJ55040.1| Histidyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
          Length = 419

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 63/416 (15%), Positives = 130/416 (31%), Gaps = 45/416 (10%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY--DSYGKEMLRLADRNDKAMIYGPTH 110
           +    R   +     E+ +P L+  +L+  S     D   KEM    DR ++++   P  
Sbjct: 25  IEHTARAIFSLYNYEELRIPLLERTELFCRSIGLETDIVQKEMYTFLDRKNRSLTLRPEA 84

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   +  + K  +     F  I   FR E   +    R R+F   +     +T    
Sbjct: 85  TASIIRAYIENKKYTQEAVSKFLSIGPMFRYERPQKG---RMRQFHQVNCECLGVTDSYI 141

Query: 171 KHSYNKMFVSYLRIFHRLGLK---SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                 M + +L       ++   +    A+  P+  D+  +++   DT      C +  
Sbjct: 142 DAEIIIMLMQFLTALEIKDIRLEINSLGCADCRPLYKDILQKWLDQLDTQTLCDDCQRRK 201

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATS-------------DVHNEKLFDSLPEN 274
              P+   +          S    +      T              +     +   L   
Sbjct: 202 ETNPLRVLDCKVSFCKEKTSQAPHFLDYQCKTCLDQFSTVTTLLSLENIPYIINHRLVRG 261

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                R          G++ ++     + G   +     +   G        A++    D
Sbjct: 262 LDYYMRTTFEVISSNIGSQGAIAGGGRYNGLVAQLGGPDIPGIGFACGMERLALLLPRKD 321

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE---QIGSQ 391
                              I       +D    I ++L K G        GE    +GS 
Sbjct: 322 ------------LPRPDFMIGVFIAEGKDKAFSISSQLHKAGF------SGEMLFNLGSM 363

Query: 392 ---FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
                 A+       +++G++ ++ + + IK+  TG++E +SL++V +Y   + S 
Sbjct: 364 KSLMRHANKARVRYCLLLGTEELALNSISIKNMDTGVQEKISLDKVSSYFITKLSK 419


>gi|290581366|ref|YP_003485758.1| histidyl-tRNA synthetase [Streptococcus mutans NN2025]
 gi|254998265|dbj|BAH88866.1| histidyl-tRNA synthetase [Streptococcus mutans NN2025]
          Length = 429

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 63/425 (14%), Positives = 121/425 (28%), Gaps = 28/425 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V  + R+   +    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 13  LPQETVKWQYVENVARKTFKKYHYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   + I   FR E        R REF   
Sbjct: 73  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKVFYIGSMFRYERPQAG---RLREFHQL 129

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD--- 215
               F                   ++F+ LG+K + +   S             L D   
Sbjct: 130 GVECFGSNNPAIDAE---TIAMAYQLFNELGIKDVTLHLNSLGNKESRKAYRQALIDYLI 186

Query: 216 --TGETQVFCSKDFMDFPIPSENTDFDDIIS--------LNSIVEQWTAPYAATSDVHNE 265
               +      +   + P+   ++   +           L+ + +     +    D+   
Sbjct: 187 PMKDKLSKDSQRRLEENPLRVLDSKEKEDKEAVENAPSILDYLDDDSQVHFQGVCDMLEV 246

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                + +   V         IF F T+           A G+   +     G       
Sbjct: 247 LDIPYVIDTNMVRGLDYYNHTIFEFITQVDKSELT--LCAGGRYDSLVEYFGGPATAGFG 304

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +              ++       + I            ++   + K G     D +G
Sbjct: 305 FGLGLERLLLVIDKQKINLPIDNSLDVYIAVLGAAANSTALELIQAIRKQGFSAERDYLG 364

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---INYASHRF 442
            +I +QF  AD+    L + +G   V   +V +K+  T     +S EE+         + 
Sbjct: 365 RKIKAQFKSADVFKTKLIMTLGESEVETGQVAVKNNFTRQEIAVSFEEIKTDFASVFKQL 424

Query: 443 SNNRP 447
            ++RP
Sbjct: 425 GSDRP 429


>gi|116207946|ref|XP_001229782.1| hypothetical protein CHGG_03266 [Chaetomium globosum CBS 148.51]
 gi|88183863|gb|EAQ91331.1| hypothetical protein CHGG_03266 [Chaetomium globosum CBS 148.51]
          Length = 677

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 93/298 (31%), Gaps = 26/298 (8%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
            ++  + + +              ++  +      E +  AD     +         P+ 
Sbjct: 358 IDQSKIRFRQHMANEMAHYACDCWDAELLTSTGWVECVGCADRSAYDLSVHAKKTGAPLI 417

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------PENKRVSARGIEVGHI 287
                 +  I     VE     +        + +  ++         K           I
Sbjct: 418 VRQRLDEPKIIEEWAVEIEKKKFGPFYKKDGKTIEAAILATTQEERGKLAKDLEENGKTI 477

Query: 288 FYFGT------KYSLPMSA---TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
               +      + S  + A     +  + +++   +     G  R++ +++E ++  +  
Sbjct: 478 VKVPSVGDGNVEVSKDLLAIKWQKRVENIREYTPNVIEPSFGIGRILYSLMEHNYWTRAS 537

Query: 339 I----------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                      +P +VAP K+ ++ + +H         K+  +L   G     DD    I
Sbjct: 538 EGGDEARGVLSFPPAVAPTKVLIVPLSSHKDFAPAV-RKLSQKLRSAGISSRVDDSSASI 596

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G +++  D LG P  + V  + V D  + ++ R +  +     +++I          +
Sbjct: 597 GKRYSRNDELGTPFGITVDFQTVKDDTITLRERDSTRQVRAEEDKIIEAIRALVEGTK 654



 Score = 50.9 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     N+  + R+        +E+    L   ++   SG  + +   M +
Sbjct: 39  SGLYDYGPPGCALQANIIDLWRKHFILEEDMLEVDCTVLTPHEVLKTSGHVEKFADWMCK 98

Query: 96  LADRND 101
                +
Sbjct: 99  DPKNGE 104


>gi|157149956|ref|YP_001451310.1| histidyl-tRNA synthetase [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189082316|sp|A8AZV0|SYH_STRGC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|157074750|gb|ABV09433.1| histidyl-tRNA synthetase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 426

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/402 (14%), Positives = 115/402 (28%), Gaps = 25/402 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEEFARETFRKYNYAEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF    A  F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKLYYMGSMFRYERPQAG---RLREFHQIGAECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV------------L 213
           +   +     +M     + F  +G+ ++ +   +       +                  
Sbjct: 137 SNPATD---VEMIAMAAQFFKEIGITNVSLELNTLGNPESRAAYRQALIDYLTPLKASLS 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLP 272
           AD+           +D   P +    +   S+   +++ ++ Y A      E L    + 
Sbjct: 194 ADSQRRLEENPLRVLDSKEPEDKVAVEGAPSILDYLDEESSAYFAAVRSMLETLQIPYVI 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               V         IF F T+ +         A G+   +     G     V   +    
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTEVAGSQLT--ICAGGRYDGLVAYFGGPETPGVGFGMGLER 311

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                      +         I            ++   L   G     D +  +I +QF
Sbjct: 312 LLLVLDKQGVELPIEMGLDAYIAVLGAGANGKALELVQSLRAQGFAAERDYLDRKIKAQF 371

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             AD+      + +G   +   ++ +K+ +T     ++ E +
Sbjct: 372 KSADIFQAKTIITLGESELESGELTVKNNVTRQEVTVAFEAI 413


>gi|195018535|ref|XP_001984800.1| GH14826 [Drosophila grimshawi]
 gi|193898282|gb|EDV97148.1| GH14826 [Drosophila grimshawi]
          Length = 679

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 85/304 (27%), Gaps = 20/304 (6%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
              Y   +             + + +              ++  +      E +  AD  
Sbjct: 352 LGYYMARIQQFLHAIGIKPECLRFRQHMGNEMAHYACDCWDAEILTSYGWVECVACADRS 411

Query: 218 ETQVFCSKDFMDFPIPSENT----DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
              +          + +E         ++  + S  +     Y   +    E L     +
Sbjct: 412 AYDLGQHTAATGVRLVAEKRLPAPKTVEVSEIVSNKQALGKTYKKDAKAITEALAKLSLD 471

Query: 274 NKRVSARGIEVGHIFYF--GTKYSLPMSATFKGADGKDHYVQMGSYG-------IGAMRV 324
           + +     +  G  +        +  + A   G       V +  +         G  R+
Sbjct: 472 DIKQVETQLASGGQYKLTLPDGATHELDAETIGVKHATKTVHVEEFIPSVVEPSFGIGRI 531

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCD 378
           + +++E S   +              +  IK      +++   +   +K+   L+K    
Sbjct: 532 MYSLLEHSFQCREGDEQRCYFTLPPVVTPIKCSILPLSNNAEFQPYTQKLSGALTKAELS 591

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINY 437
              DD    IG ++A  D +  P  + V    +     V ++ R T  +  + LE V+  
Sbjct: 592 HKVDDSSGSIGRRYARTDEIAIPYGITVDFDTLKAPHTVTLRDRNTMKQVRIDLEAVVGV 651

Query: 438 ASHR 441
               
Sbjct: 652 VKDL 655



 Score = 41.6 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+ A+ R+  +     +E+    L   
Sbjct: 73  LLKRRFFYDQSFAIYGGITGQYDFGPMGCSLKSNILALWRQFFSLEEQMLEVDCSILTPE 132

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  + +   M++     + 
Sbjct: 133 PVLKASGHVERFADLMVKDVKTGEC 157


>gi|189536638|ref|XP_692410.3| PREDICTED: glycyl-tRNA synthetase [Danio rerio]
          Length = 764

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 76/283 (26%), Gaps = 24/283 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 454 FRQHMDNEMAHYACDCWDAETKTSYGWIEIVGCADRSCYDLLCHARATKVPLVAEKPLKE 513

Query: 241 --------------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                          I        ++   Y A  D       + L           E G 
Sbjct: 514 PKVVNVVQFEPNKGAIGKAYKKDAKFAMEYLAICDECYITEQEKLLNENGEFTIETE-GK 572

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            F              K    ++    +     G  R++ ++ E +   +      +   
Sbjct: 573 TFKLTKDMVNIKRFQ-KTLHVEEVVPNVIEPSFGIGRIMYSIFEHTFRIREGDEQRTYFS 631

Query: 347 FKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           F  ++   K      + +Q       ++   L++ G     DD    IG ++A  D +G 
Sbjct: 632 FPATVAPYKCSVLPLSQNQEFMPFVRELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGV 691

Query: 401 PLQVIVGSKFVSDS--KVEIKHRLTGIREDMSLEEVINYASHR 441
              + +    V+ +     ++ R +  +    + E+       
Sbjct: 692 AFGITIDFDTVNKNPHTATLRDRDSMRQIRAEVGELPEIIRDL 734



 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+  + R+        +E+    L    +   SG  D +   M++
Sbjct: 170 SGLYDFGPVGCALKNNILQVWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADYMVK 229

Query: 96  LADRNDK 102
                + 
Sbjct: 230 DVKNGEC 236


>gi|145640319|ref|ZP_01795903.1| histidyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|145274905|gb|EDK14767.1| histidyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
          Length = 423

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 67/412 (16%), Positives = 129/412 (31%), Gaps = 27/412 (6%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y     FR E   +    +  +  ++     +  
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWYI-GPMFRHERPQKGRYRQFHQVGVEVFGIANPE 138

Query: 167 PEGSKHSYNKMFVSYLRIFHR-------LGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +             L I          +G         S  +G   +H+ ++  +  E 
Sbjct: 139 IDAELIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLENHQDLMNDEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVS 278
            V      +D   P      D+   L   ++  + A +     + +          K V 
Sbjct: 199 LVRNPLRILDTKNPELQKVLDNAPKLLDYLDDESRAHFEQLCSLLDAVGIQYEINPKLVR 258

Query: 279 ARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   +F       G + ++     + G       H      + +G  R+V  V E 
Sbjct: 259 GLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAMGLERLVLLVQEV 318

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           + +       D    ++     +        +  EK+ + L     +            Q
Sbjct: 319 NPNVPAKSAVDIYVVYQGEGATL-----AAFELAEKVRSELP--HLNTMLHCSSGNFKKQ 371

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
           F  AD  G  L +++G   V + +V +KH   G  ++ + L  +I+Y   +F
Sbjct: 372 FKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVNIIDYLQTQF 423


>gi|332288522|ref|YP_004419374.1| histidyl-tRNA synthetase [Gallibacterium anatis UMN179]
 gi|330431418|gb|AEC16477.1| histidyl-tRNA synthetase [Gallibacterium anatis UMN179]
          Length = 427

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 68/444 (15%), Positives = 129/444 (29%), Gaps = 62/444 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        V   I++  +  G  E+ +P ++S  L+  + G   D   KEM  
Sbjct: 10  GMNDYLPSDTPLWQWVEGKIKQRLSSYGYSEIRMPIVESTPLFARAIGEVTDVVEKEMFT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF---RDELRPRFGVMRS 152
             DR+D+++   P            H   Y      +Y   +       + R R      
Sbjct: 70  FNDRDDESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRYERPQKGRYRQFHQCG 129

Query: 153 REF------------------LMKDAYSFDLTPEGSK--------HSYNKMFVSYLRIFH 186
            E                   L +D    D                +Y    V YL+ + 
Sbjct: 130 VEVFGIANPLIEAELIIMTAKLWQDLGIADHVQLQLNSIGSLEARKNYRAALVEYLQDYV 189

Query: 187 RLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               +    R  + P  I          + +          +       +  +  +    
Sbjct: 190 DQLDEDSKRRLTTNPLRILDSKDERVQQILNNAPKLHDYLDEDSRQHFATLCSILEQYGI 249

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I ++        +    E +  +L     V   G   G +   G             
Sbjct: 250 RYEINQKLVRGLDYYNKTVFEWVTTALGAQGTVCGGGRYDGLVEQLG------------- 296

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                H      + +G  R+V  + E   +              + +  I   D      
Sbjct: 297 ----GHATPAVGFAMGLERLVLLIQEVVENPPINP--------NVDIYVIHQGDNTTLP- 343

Query: 365 CEKIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             ++ ++L        V     G     QF  AD LG    +I+G   V+  +V IK  L
Sbjct: 344 ALQLASQLRSALPQIKVMLHCSGGNFKKQFKRADKLGAKFALILGEDEVAQQQVVIKDLL 403

Query: 423 TGIRE-DMSLEEVINYASHRFSNN 445
           +G ++  ++  +V+ Y +  + + 
Sbjct: 404 SGEQQITLANTDVVGYLTPFYQSR 427


>gi|225859879|ref|YP_002741389.1| histidyl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|254782347|sp|C1CAV1|SYH_STRP7 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|225721003|gb|ACO16857.1| histidyl-tRNA synthetase [Streptococcus pneumoniae 70585]
          Length = 429

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 118/409 (28%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIVMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENK 275
                      +D     +    ++  S+   +++ +  +        E L  D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQTHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESRQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|115438430|ref|XP_001218064.1| glycyl-tRNA synthetase 1 [Aspergillus terreus NIH2624]
 gi|114188879|gb|EAU30579.1| glycyl-tRNA synthetase 1 [Aspergillus terreus NIH2624]
          Length = 656

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 85/286 (29%), Gaps = 25/286 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     +   K+    P+       +
Sbjct: 352 FRQHMANEMAHYAADCWDAELHTSYGWIECVGCADRSAYDLSVHKNKTGAPLVVRELRPE 411

Query: 241 DIISLNSIVEQWTAPYAA---TSDVHNEKLFDSLPENKR--------------VSARGIE 283
            +      ++     +               D+L +  R              V   G+ 
Sbjct: 412 PLKVEEWQIDLDKKKFGPRFKKDGKAVAAAIDALSQELREKLALDLEQQGKIEVDVEGVG 471

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
            G +       ++         + +++   +     G  R+  ++IE  +  +       
Sbjct: 472 SGKVELDKDIVTIEKRTRV--ENVREYTPNVIEPSFGIGRIFYSLIEHVYWSREGDEARG 529

Query: 344 VAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           V  F   +   K      +     +   +++  +L ++G     DD    IG ++A  D 
Sbjct: 530 VLSFPPVIAPTKVLIVPLSTHASFKPLSQRLMMKLRRMGISNRVDDSSASIGKRYARNDE 589

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG P  + V  + V D+   ++ R +  +   S +E++        
Sbjct: 590 LGTPFGITVDFQSVKDNTFTLRDRDSTKQVRASEDEIVQALKSLVE 635



 Score = 51.7 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G   + N+  + R+        +E+    L   ++   SG  + +   M +
Sbjct: 38 SGLYDYGPPGCAVVTNIVDLWRKHFVLEEDMLEVDCTMLTPEEILKTSGHVEKFADWMCK 97


>gi|68475162|ref|XP_718299.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
 gi|68475355|ref|XP_718200.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
 gi|46439957|gb|EAK99268.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
 gi|46440060|gb|EAK99370.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
          Length = 169

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 6/142 (4%)

Query: 19  EIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD 78
           +I +H+++ + G I     G+ +W  +G    + ++ IIR+  +     E+S+  +   +
Sbjct: 29  QIPTHEVLTKLGYITYPRAGLVNWSKMGLLIQNKISQIIRQRMDEIQFEEVSLSLISHKE 88

Query: 79  LWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQL 137
           LW  + R+D        +        +  PT EE +T+  +     SY+N P   YQI  
Sbjct: 89  LWKLTNRWDQEE-----IFKLVGDEYLLVPTAEEEITNYVKKQFLESYKNFPLALYQINP 143

Query: 138 KFRDELRPRFGVMRSREFLMKD 159
           KFR+E RPR G++R +EFLMKD
Sbjct: 144 KFRNEKRPRGGLLRGKEFLMKD 165


>gi|332071196|gb|EGI81691.1| histidyl-tRNA synthetase [Streptococcus pneumoniae GA17545]
          Length = 429

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 118/409 (28%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIVMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENK 275
                      +D     +    ++  S+   +++ +  +        E L  D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHVDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFVAKTLITLGESEVESGQVTVKNNQTREEVQVSLEIISKNFSEIFEK 423


>gi|289613106|emb|CBI59922.1| unnamed protein product [Sordaria macrospora]
          Length = 733

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 96/295 (32%), Gaps = 23/295 (7%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
            ++  + + +              ++  +      E +  AD     +         P+ 
Sbjct: 416 IDQSKIRFRQHMGNEMAHYACDCWDAELLTSSGWVECVGCADRSAYDLTVHAKKTGAPLI 475

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------------PENKRVSARG 281
              T     I      E  +  +        + +  ++             E K      
Sbjct: 476 VRQTLETPEIVEKWDAEINSKKFGPAFRKDAKTVEAAILALSQEELAKLAEELKTNGKIV 535

Query: 282 IEVGHIFYFGTKYSLPMSA---TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           I+V  +       S  + A        + +++   +     G  R++ +++E ++  +  
Sbjct: 536 IDVPGVGEGKVDVSKDLLAIEWKKHTINIREYTPNVIEPSFGIGRILYSLLEHNYWVREG 595

Query: 339 I-------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                   +P +VAP K+ ++ + + D+       ++  +L  VG     DD    IG +
Sbjct: 596 DEARGVISFPPAVAPVKVLIVPLSSKDEFAPHV-RRLSQKLRSVGISSRVDDSSASIGRR 654

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +A  D LG P  + +  + + D    ++ R +  +      ++++        ++
Sbjct: 655 YARNDELGTPFGLTIDFQTLQDGTFTLRERDSTRQVRAEEAKIVDAIKALVEGSK 709



 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 10/100 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHS-------KGIYSWLPLGQKALDNVNAIIREEQN 62
            L+  P D   A+ + MLR  M    S        G+Y + P G     N+  I R+   
Sbjct: 77  TLKGQPLD--KAALESMLRRRMFFAPSFDIYGGVAGLYDYGPPGCALQANIIDIWRKHFV 134

Query: 63  -RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
                +E+    L   D+   SG  D +   M +     D
Sbjct: 135 LEEDMLEVDCTALTPHDVLKTSGHVDKFADWMCKDPKNGD 174


>gi|323346310|gb|EGA80600.1| Grs2p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 616

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 82/283 (28%), Gaps = 20/283 (7%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF--------MDFPI 232
           + +              +   +      E +  AD     +                   
Sbjct: 319 FRQHLKNEMAHYATDCWDGEILTSYGWIECVGCADRAAFDLTVHSKKTGRSLTVKQKLDT 378

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV-----GHI 287
           P E T++   ++      ++         V ++   D L        +  E      G I
Sbjct: 379 PKERTEWVVEVNKKFFGSKFKQKAKLIESVLSKFSQDELIRRHEELEKNGEFTCQVNGZI 438

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
               +        T      +++   +     G  R++  + +     +          F
Sbjct: 439 VKLDSSLVTIKMKTTL-QHIREYIPNVIEPSFGLGRIIYCIFDHCFQVRVDSESRGFFSF 497

Query: 348 KISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            + +  IK      +++       ++I   L K       DD    IG ++A  D LG P
Sbjct: 498 PLQIAPIKVFVTTISNNDGFPAILKRISQALRKREIYFKIDDSNTSIGKKYARNDELGTP 557

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + +  + + D  V ++ R +  +   ++ +VI+       N
Sbjct: 558 FGITIDFETIKDQTVTLRERNSMRQVRGTITDVISTIDKMLHN 600



 Score = 50.5 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G++   P G +  +N+  + RE        +++  P L   D+   SG  D +   M R
Sbjct: 33  SGLFDLGPPGCQLQNNLIRLWREHFIMEENMLQVDGPMLTPYDVLKTSGHVDKFTDWMCR 92

Query: 96  LADRNDKAMIYGPTHEE 112
              +  +        E+
Sbjct: 93  -NPKTGEYYRADHLIEQ 108


>gi|254173331|ref|ZP_04880004.1| histidyl-tRNA synthetase [Thermococcus sp. AM4]
 gi|214032740|gb|EEB73569.1| histidyl-tRNA synthetase [Thermococcus sp. AM4]
          Length = 435

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 66/424 (15%), Positives = 121/424 (28%), Gaps = 41/424 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   +LP        V   IRE   R    E+  PT +  +L+   SG  +   K++   
Sbjct: 8   GTRDFLPEEMAKRRWVFERIREVFERYNFHEVLTPTFEYTELFKLRSG--EEVVKQLYAF 65

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +  ++ S  ++       +Y   +   +E +      R REF 
Sbjct: 66  LDKGGRDISLRPDMTSSVARLYVSAFQTAPKPIKWYYMANMFRYEEPQSG----RYREFW 121

Query: 157 MKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPIGGDLSHE 209
                       E           SYL         +I  R      A+   +  D+   
Sbjct: 122 QAGVELIGSDRVEADAEVIALFTESYLATGLEDFTVNIGDRVLLDEFAKMLGVKDDIGLM 181

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSE---------NTDFDDIISLNSIVEQWTAPYAATS 260
            ++      T+    K   DF +  E             +    L    E +T+  A   
Sbjct: 182 RLIDKKDKLTKEEFVKALRDFGLSDEGVEKVLSLVEIKGEPNEVLPKAEELFTSEVAKAE 241

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA----------DGKDH 310
                +L D L          I++G    F    S+   A                  + 
Sbjct: 242 IRRLYELVDLLEAYGVSKWIRIDLGIARGFDYYTSVVFEAIAPNDLGIGSIGGGGRYDNL 301

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
               G     A      V       +       +       +     +   R    ++ +
Sbjct: 302 IEVFGGKPTPATGFAIGVERLIPILEWKGLIPEIKLRPDVYVIPIGKEVELRKTAVEVVS 361

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVA-DLLG---FPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            L + G     +      G +   A D  G    P  V++G + + +  V I+   TG +
Sbjct: 362 ALRRAGVKADVELT----GRKLRKALDYAGRLNVPYVVLIGKRDLENGNVTIRDMETGEQ 417

Query: 427 EDMS 430
           + + 
Sbjct: 418 KVVK 421


>gi|11596253|gb|AAG38542.1|AF309805_7 glycyl tRNA synthetase [Pneumocystis carinii]
          Length = 615

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/372 (16%), Positives = 124/372 (33%), Gaps = 34/372 (9%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T +    +  +    +   +PF    +   FR+E+ PR G++R REF M +   +
Sbjct: 210 YLRPETAQGQFLNFNKLLEFNNGKMPFASVVVGKSFRNEISPRSGLLRMREFTMAEIEHY 269

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA----------------ESGPIGGDLS 207
                     +N++    ++   R    S                      +        
Sbjct: 270 VDPLNKDHRRFNEVENVKMKFLTREIQMSGKEEVIEMKIGEAVARGILENTTLAYFLARI 329

Query: 208 HEFIVLADTG-ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD--VHN 264
           H F++      E   F      +    +      ++++    +E       A  D  VH+
Sbjct: 330 HLFLIRIGMNQEKLRFRQHMNNEMAHYASVCWDAELLTSYGWIECVGCADRAAYDLTVHS 389

Query: 265 EKLFDSL--------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMG 315
           EK  + L        P         ++   I       SL      K     +++   + 
Sbjct: 390 EKTKEKLVVRELLPKPMEVTEWVVNVDKKKIENLKFPSSLFTIEQVKKTISVREYIPNVI 449

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIY 369
               G  R++ ++IE S+  +       V  F   +  +K      +++       +K+ 
Sbjct: 450 EPSFGIGRILYSLIEHSYWIRSDDVDRCVLSFPPIVAPVKCLLVPLSNNSAFDPIIDKLS 509

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L ++G     DD    IG +++  D LG P  + V  + V+D  + ++ R T  +   
Sbjct: 510 FELRQLGISHKVDDSSAAIGRRYSRNDELGTPFGITVDFQTVNDGSLTLRERDTTRQIRA 569

Query: 430 SLEEVINYASHR 441
           S +E++      
Sbjct: 570 SEKEILRVIKEL 581



 Score = 43.6 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 39 IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             + P G     N+  + R+        +E+    +   ++   SG    +   M +
Sbjct: 40 FVYYGPPGMALEQNILNVWRKHFVYEENMLEIGTSIVTPHEVLETSGHVSKFRDWMCK 97


>gi|323699396|ref|ZP_08111308.1| histidyl-tRNA synthetase [Desulfovibrio sp. ND132]
 gi|323459328|gb|EGB15193.1| histidyl-tRNA synthetase [Desulfovibrio desulfuricans ND132]
          Length = 413

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 61/400 (15%), Positives = 108/400 (27%), Gaps = 40/400 (10%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           + A  RE  +R G  E+  P L+  +L+ +S     D  GKEM    DR D+++   P  
Sbjct: 24  MEACAREIFSRYGFGELRTPILEKTELFQKSIGEDTDVVGKEMFTFPDRKDRSLTMRPEA 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   F             F+     FR E   +    R R+F   +A  F      +
Sbjct: 84  TAGVVRAFIESKTYQPGNISKFFTFGPMFRYERPQKG---RQRQFHQINAECFGADEPQA 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHEFIVLADTGETQVFCS 224
                 + +       R+GL+ + +   S       P       ++    D  +    C 
Sbjct: 141 DAE---LILMLTAFLRRIGLRDLTVELNSLGCHECRPAYKQALVDYYHAQDKAKFCEDCQ 197

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK-------------LFDSL 271
           +     P+   +        L       T         H                L   L
Sbjct: 198 RRMETNPLRVLDCKVPTCKELVKDAPVITDHLCPDCRAHFADVRAVLDGAGVAYVLNPRL 257

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   R          G + S+     + G             G        A++  
Sbjct: 258 VRGLDYYVRTCFEVTSNDIGAQTSVAGGGRYDGLIRSLDGPDCPGTGFACGMERLALLLG 317

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
               +   +  +V                  +        L   G        G  + S+
Sbjct: 318 DVAPEAPDFYLAVVA------------PEAANEAMLFAQALRNKGLRGEVSFAGGSMKSR 365

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMS 430
              A+  G    +I+G   ++D  V +K       +E + 
Sbjct: 366 MRAANKSGAGTCLILGEAELADRTVTVKDMAGNREQETLD 405


>gi|300871818|ref|YP_003786691.1| histidyl-tRNA synthetase class IIa [Brachyspira pilosicoli 95/1000]
 gi|300689519|gb|ADK32190.1| histidyl-tRNA synthetase class IIa [Brachyspira pilosicoli 95/1000]
          Length = 416

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/403 (13%), Positives = 122/403 (30%), Gaps = 21/403 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
           L+ +   I+E     G   +  P  +  DL+        D  GKEM    DR  +++   
Sbjct: 22  LEFIENKIKEIVRLYGYKRIRTPLFEYTDLFTRGIGEGTDIVGKEMFTFEDRGGRSLTLR 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  +           + +   +R E   +    R REF          T 
Sbjct: 82  PEGTASVARAYVENSLQNEYAINKLFYLGTMYRAERPQKG---RYREFNQFGIECIGGTS 138

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-TGETQ-VFCSK 225
                    + ++ L      G+ ++ +   +        +    L +  GE +   C  
Sbjct: 139 PVIDAEVIALNINIL---KEFGIDNVNLLINTVGCSNCKPNYNRALREAIGERKNELCET 195

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA------ 279
               +                 I++     Y    D   E       E  +++       
Sbjct: 196 CQNRYENNILRILDCKNEKCKEILKDIPKFYDYVCDECKEHFDSLCNELTKINQNFTIDN 255

Query: 280 ---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F  + +   S +     G+   +  G +                   
Sbjct: 256 MLVRGLDYYTKTAFEVQTNALGSQSAILGGGRYDNLI-GLFNSNKDVPAVGSAMGLERLL 314

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            ++  ++        + + A  +   +    I   L        +D   + I +QF  A+
Sbjct: 315 IVLENNNNIINDRLDVFVIAFKETQNEV-LNIMQLLRAKNISCDFDYNIKSIKNQFKSAN 373

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
                  +IVG + + ++K ++K+  T    D++L ++  + +
Sbjct: 374 KRNAKYALIVGEEELKNNKFKLKNMDTSEERDVALSDIAKFIN 416


>gi|281204606|gb|EFA78801.1| histidine-tRNA ligase [Polysphondylium pallidum PN500]
          Length = 440

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 66/424 (15%), Positives = 133/424 (31%), Gaps = 21/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G     P  ++    V  + R      G  EMS P ++  +L+  S     D   KEM  
Sbjct: 7   GTIDIFPKEKRLYQFVGNVGRRVAAIYGFKEMSTPIIEHTELFQRSVGDDSDIVSKEMYS 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D         P +   +     +   S  ++P  ++     FR E   R    +  + 
Sbjct: 67  FKDLGGSMTCLRPENTAGVVRAVVNEQ-SAAHMPQRYFYSGPMFRYERPQRGRQRQFEQL 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            ++     D + +        MF++ L I +      I    +       L+   +   D
Sbjct: 126 GIESFGESDPSSDVEVIDCANMFLNQLSITNDKYTLKINSLGDLESRSKYLNQLELYYKD 185

Query: 216 TGETQVFCSKDFMDFP--IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
             E+    S+D +D    +   ++      +++    +      + S     K+ + L +
Sbjct: 186 RRESLSKDSQDRLDRGSILRILDSKDVKDKAISKDAPKLFDYLNSESLDRFNKVLNGLDK 245

Query: 274 NKRVSA------RGIEV--GHIFYF----GTKYSLPMSATFKG---ADGKDHYVQMGSYG 318
            +          RG++     IF       T  S        G    DG  +     S  
Sbjct: 246 FELKYQLDHNLVRGLDYYNHTIFEMVVGDETTTSSAPPLAILGGGRYDGLANKFGYKSQK 305

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
             A+  +            +         K  ++     ++        I   L   G  
Sbjct: 306 SAALPSIGWACGVERILMFMDQQLLKPETKPIVVCTFESNESIVQLARDIARTLRHQGYA 365

Query: 379 VFWDDMGEQIGSQFAVADLLGFP-LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V   D+      Q   A+    P + ++VG +    + V+IKH  T  +  + +E++ ++
Sbjct: 366 VIVSDLNLSTSKQIRNANQRYEPEVVIVVGGEEALTNSVQIKHMATESKHTVRIEKITDH 425

Query: 438 ASHR 441
            +  
Sbjct: 426 LTQL 429


>gi|163753255|ref|ZP_02160379.1| glycyl-tRNA synthetase [Kordia algicida OT-1]
 gi|161326987|gb|EDP98312.1| glycyl-tRNA synthetase [Kordia algicida OT-1]
          Length = 513

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 109/355 (30%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +G ++   AD      +   T + +  +           +PF   Q    FR+E+  R  
Sbjct: 199 FGTKLGASADTAMDLYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQTGKAFRNEIVARQF 258

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P   +  Y +   + ++    LG              G+ ++
Sbjct: 259 IFRQREFEQMEMQFFVK-PGTQQEWYEQWKENRMKWHLSLG-------------MGEDNY 304

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            F             +     FP                        +     +H+   F
Sbjct: 305 RFHDHEKLAHYADAAADIEFKFPF----------------------GFKELEGIHSRTDF 342

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     +         G    +    S      +                + +  ++   
Sbjct: 343 DLSQHEE-------FSGKKLQYFDHESKESYVPYVVETSIGLDRM--FLAVFSNSLINET 393

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E   +   +  P  +AP K +++ +   D    +   KI   L     +V +D+    +
Sbjct: 394 LEDGSERVVLRLPAVLAPTKAAVLPLIKRD-GLPEIARKIVDDLK-FDFNVIYDEKDA-V 450

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D  G P  + V    + D+ V I+HR T  ++ + +E+V    +    
Sbjct: 451 GRRYRRQDAAGTPFCITVDHDTLEDNMVTIRHRDTMEQQRVKIEDVRGIINKEVD 505


>gi|332198542|gb|EGJ12625.1| histidyl-tRNA synthetase [Streptococcus pneumoniae GA41317]
          Length = 429

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 117/409 (28%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +          M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPAIDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENK 275
                      +D     +    ++  S+   +++ +  +        E L  D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQTHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     +SLE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESRQVTVKNNQTREEVQVSLETISQNFSEIFEK 423


>gi|207340338|gb|EDZ68719.1| YPR081Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 431

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 82/283 (28%), Gaps = 20/283 (7%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF--------MDFPI 232
           + +              +   +      E +  AD     +                   
Sbjct: 132 FRQHLKNEMAHYATDCWDGEILTSYGWIECVGCADRAAFDLTVHSKKTGRSLTVKQKLDT 191

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV-----GHI 287
           P E T++   ++      ++         V ++   D L        +  E      G I
Sbjct: 192 PKERTEWVVEVNKKFFGSKFKQKAKLIESVLSKFSQDELIRRHEELEKNGEFTCQVNGEI 251

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
               +        T      +++   +     G  R++  + +     +          F
Sbjct: 252 VKLDSSLVTIKMKTTL-QHIREYIPNVIEPSFGLGRIIYCIFDHCFQVRVDSESRGFFSF 310

Query: 348 KISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            + +  IK      +++       ++I   L K       DD    IG ++A  D LG P
Sbjct: 311 PLQIAPIKVFVTTISNNDGFPAILKRISQALRKREIYFKIDDSNTSIGKKYARNDELGTP 370

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             + +  + + D  V ++ R +  +   ++ +VI+       N
Sbjct: 371 FGITIDFETIKDQTVTLRERNSMRQVRGTITDVISTIDKMLHN 413


>gi|281421902|ref|ZP_06252901.1| glycine--tRNA ligase [Prevotella copri DSM 18205]
 gi|281404144|gb|EFB34824.1| glycine--tRNA ligase [Prevotella copri DSM 18205]
          Length = 520

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 104/355 (29%), Gaps = 47/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  +M   +D   K  +   T + +  D           LPF   QI   FR+E+  R  
Sbjct: 198 FSTQMGAASDATSKVYLRPETAQGIFVDYLSVQKTGRMKLPFGICQIGKAFRNEVVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           V R REF   +   F   P      +       L     LG              G+ ++
Sbjct: 258 VFRMREFEQMEMQFFCQ-PGTEMKWFEYWKKVRLAWHEALG-------------MGNENY 303

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            +             +      P                        +     +H+   F
Sbjct: 304 RYHDHEKLAHYANAATDIEFKMPF----------------------GFKEVEGIHSRTNF 341

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     K         G    +           +             S            
Sbjct: 342 DLSQHEK-------YSGRSIKYFDPEKNESYVPYDVETSIGVDRMFLSVMC--HSYCEEK 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P+++AP K ++  +        +   +I   L     +  + D  + I
Sbjct: 393 LENGETRVVLRLPEALAPVKCAVFPLDKK-YGLPELAHEIVDELK-FHFNTHYGDPKDSI 450

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  + V  +  +D KV +++R T  +E +++ ++ +    R S
Sbjct: 451 GKRYRRQDAIGTPFCITVDHETPNDHKVTLRYRDTMEQERVAISDLRSIIEERVS 505


>gi|270291756|ref|ZP_06197972.1| histidine--tRNA ligase [Streptococcus sp. M143]
 gi|270279841|gb|EFA25682.1| histidine--tRNA ligase [Streptococcus sp. M143]
          Length = 426

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 121/409 (29%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHFDAVRQMLETLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T        T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITGI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I    Q       ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGQGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V++K+  T    +++L+ +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESGQVKVKNNQTREEVEVTLDTISQNFSEVFEK 423


>gi|302423350|ref|XP_003009505.1| bifunctional aminoacyl-tRNA synthetase [Verticillium albo-atrum
           VaMs.102]
 gi|261352651|gb|EEY15079.1| bifunctional aminoacyl-tRNA synthetase [Verticillium albo-atrum
           VaMs.102]
          Length = 535

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 120/373 (32%), Gaps = 73/373 (19%)

Query: 27  LRTGMIHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT-LQSADLWVES 83
           L+  M+  ++   G +   P        +     ++    G  E S P  L S  L  E 
Sbjct: 86  LKAEMVEYYNEIAGFFILRPASMYIWSAIRKWFSDKIELMGVEETSFPIFLSSKSLEKEK 145

Query: 84  GRYDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
              + +  E+  +    DK +       PT E VM   +   I+S+R+LP    Q     
Sbjct: 146 DHVEGFAPELAWVTKAGDKDLEVPVAVRPTSEAVMYPYYSKWIRSHRDLPLRLNQWNSVV 205

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           R E +     +R+REFL ++ ++  LT E +     ++   Y  ++ +L           
Sbjct: 206 RWEAKQTTPFLRTREFLWQEGHTAHLTEELAGKEVLEILELYAGVYEQL----------- 254

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                                           +P          +     +     Y  T
Sbjct: 255 ------------------------------LAVPVVR------GTKTENEKFAGGFYTTT 278

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            + +       +P N R    GI+       G  +S     T +    K +++ +     
Sbjct: 279 VEGY-------IPSNGR----GIQGATSHCLGQNFSKMFDITVEDPVNKGNHIHVWQNSW 327

Query: 320 G-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYAR 371
           G + RV+  ++    D KG++ P  +A  +  +I +           +   +  E I   
Sbjct: 328 GLSTRVIGVMVMIHGDDKGLVLPPRIAKIQAIVIPVGITAKLAAEDRKKLEEGVEDIRHP 387

Query: 372 LSKVGCDVFWDDM 384
           L K G     D  
Sbjct: 388 LKKAGVRTESDHR 400


>gi|289674656|ref|ZP_06495546.1| prolyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
          Length = 87

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE--QIGSQ 391
           D  GIIW D++APF+I+L+ ++      R+A +K+YA L+  G +V  DD  +    G +
Sbjct: 5   DENGIIWNDTLAPFQIALVPLRYETDAVREATDKLYADLTAAGFEVLLDDRDKKTSPGIK 64

Query: 392 FAVADLLGFPLQVIVGSKFVSDS 414
           FA  +L+G P +++V  + +++ 
Sbjct: 65  FADMELIGIPHRIVVSDRGLAEG 87


>gi|261749646|ref|YP_003257332.1| glycyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497739|gb|ACX84189.1| glycyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 487

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/452 (10%), Positives = 125/452 (27%), Gaps = 61/452 (13%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEM---SVPTLQSADLWVESGRYDSYGKEMLR 95
           +Y + P G +  +N+     +   +     +       L  +++W  SG  + + + ++ 
Sbjct: 34  VYDYGPHGIELKNNIKKYWWKSMTQL-HENIVGLDSSILMHSEIWRASGHIEKFNELLID 92

Query: 96  LAD-----------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP--------------- 129
             D           R     +             ++ I S                    
Sbjct: 93  NKDSKKRYSPEVLIREHINFMQKAPKTSKFIKNRKNEILSRLEKSIKKKDLLDIRVLIDE 152

Query: 130 -------FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
                               +  +    +   FL  +      +   S            
Sbjct: 153 LNISDPLCGSNNWTNIRSFNMMFKIKEEKGDLFLRPETAQGIFSNFFSVK--KSSRKKIP 210

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA----DTGETQVFCSKDFMDFPIPSENTD 238
               ++G            +      E + +        E + +     +      E   
Sbjct: 211 FGIAQIGKSFRNEIMARQFLFRMREFEQMEMQFFILPEEEMKWYEYWKKIRLKWHLELNL 270

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            D    L +      A YA+              E + + +R         F +K     
Sbjct: 271 GDKKYQLRNH--DHLAHYASAGADIEFHFPFGFKEIEGIHSRRDFDLKRHEFFSK----K 324

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAV---------IESSHDGKGIIWPDSVAPFKI 349
                  + +++   +    +G  R   A+         +++  +   +  P  ++P K 
Sbjct: 325 KLRVFRDNLENYIPYVIETSLGLDRFFLAIYSSSLKKEKLDNGKERVVLKIPPCLSPVKA 384

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           ++  +   D    +  +KI+  L  +       D  E IG  +   D +G P+   +   
Sbjct: 385 AIFPLVLKD-GLPEIAKKIFQNLK-IDYR-LVYDQKESIGKLYRRQDAIGTPICFTIDYD 441

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            ++D  V +++R + +++ + ++E+       
Sbjct: 442 TINDDTVTMRYRDSMLQKRVPIKEISKIIEKE 473


>gi|218889914|ref|YP_002438778.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
 gi|226737077|sp|B7UWI9|SYH_PSEA8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|218770137|emb|CAW25899.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
          Length = 429

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/425 (12%), Positives = 110/425 (25%), Gaps = 26/425 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP    A   +        +  G  E+ +P L+  +L+        D   KEM  
Sbjct: 10  GMNDILPEQTPAWRYLERTFAGLLDGYGYSEIRLPILEFTELFARGIGEGTDVVDKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H  S        +     FR E +P+ G  R    
Sbjct: 70  FLDRNGESLTMRPEGTAGCVRAVLEHGLSGGGQVQKLWYTGPMFRYE-KPQKGRYRQFHQ 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS------HE 209
           +  + ++       ++       +             +     S               E
Sbjct: 129 IGVEVFNLPGPDIDAELIILTWRLWQKLGMADAVTLQLNTLGSSEARARYREALVAYLQE 188

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL----NSIVEQWTAPYAATSDVHNE 265
                D    +   +          E+T    + +         E         + +   
Sbjct: 189 RFEQLDEDSQRRMTTNPLRILDSKVESTQALLVGAPTLHDYLDEESIAHFEGLKARLDAV 248

Query: 266 ----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               ++   L        R          G + ++     + G   +         G   
Sbjct: 249 GLRYEINQKLVRGLDYYCRTAFEWVTDKLGAQGTVCGGGRYDGLVSQFGGKPTPGVGFAM 308

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDV 379
                 ++  +              +  +        +    A   +  +L     G  +
Sbjct: 309 GVERLVLLLETLGVIPAELNRPADLYVCAFG------EPAELAALTLAEQLRSAIPGIRL 362

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYA 438
             +       SQF  AD  G    +I+G   V++  V  K  R  G ++ ++ + +  + 
Sbjct: 363 LVNAGAGSFKSQFKKADKSGARFALILGEDEVANRVVGFKPLRDEGEQQSIAWDALPEHL 422

Query: 439 SHRFS 443
           +    
Sbjct: 423 AACLE 427


>gi|317036964|ref|XP_001398427.2| glycyl-tRNA synthetase 1 [Aspergillus niger CBS 513.88]
          Length = 738

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/285 (11%), Positives = 91/285 (31%), Gaps = 23/285 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     +   K+    P+    T  +
Sbjct: 434 FRQHMANEMAHYATDCWDAELHTSYGWIECVGCADRSAYDLTVHKNKTGAPLVVRETRAE 493

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPM 298
            +      ++     +        + +  ++     +      +++        +     
Sbjct: 494 PLKVEEWQIDLDKKKFGPRFKKDGKTVTAAIDALSQELREKLSLDLEQTGKIEVEVEGVA 553

Query: 299 SATFKG-------------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII------ 339
               +               + +++   +     G  R++ ++IE  +  +         
Sbjct: 554 GGKVELDKELIKIEKRTRVENVREYTPNVIEPSFGIGRILYSMIEQVYWSREGDEARGVL 613

Query: 340 -WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            +P ++AP K+ ++ +  H Q      +++  +L ++G     DD    IG ++A  D L
Sbjct: 614 SFPPAIAPTKVLIVPLSTH-QSFAPLVQRLTTKLRRMGVSNRVDDSSASIGKRYARNDEL 672

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  V V  + V D+   ++ R +  +   S +E+         
Sbjct: 673 GTPFGVTVDFQSVKDNTFTLRDRDSTKQVRASEDEIAQAIKSLVE 717



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G   L+N+  + R+        +E+    L   ++   SG  D +   M +
Sbjct: 120 SGLYDYGPPGCAVLNNIVDLWRKHFVLEEDMLEVDCTMLTPHEILKTSGHVDKFADWMCK 179


>gi|159040920|ref|YP_001540172.1| glycyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
 gi|157919755|gb|ABW01182.1| glycyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
          Length = 590

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 + I   L   G    +DD G  IG+++A  D LG PL V V +  + D+ V ++
Sbjct: 488 ELIKVAKDIRINLINEGITAVYDD-GGTIGARYAKWDSLGTPLAVTVDADTLKDNTVTVR 546

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R + ++  + ++++++       
Sbjct: 547 DRDSRVQVRVKVQDLVSIIRELLR 570



 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 6/82 (7%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQN----RTGAIEMSVPTLQSADLWVESGRYDSYG 90
            + G Y +  LG     N+    R             E+  P +  + ++  SG  + + 
Sbjct: 27  EAGGFYDYGLLGVLLKRNIIEKWRRMFILPYLEFTY-EVETPVIMPSIVFEASGHVEHFT 85

Query: 91  KEMLRLADRNDKAMIYGPTHEE 112
             ++  +    +        EE
Sbjct: 86  DYLVTCSKC-GRKYRADHLVEE 106


>gi|15673949|ref|NP_268124.1| histidyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|32130145|sp|Q9CE78|SYH_LACLA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|12725009|gb|AAK06065.1|AE006426_11 histidyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|326407504|gb|ADZ64575.1| histidyl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56]
          Length = 430

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/416 (14%), Positives = 123/416 (29%), Gaps = 29/416 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DSYGKEMLR 95
           G    LP        +  I R   N     E+  P  +S +L+   +G   D   KEM  
Sbjct: 8   GTADLLPAETAKWQYIEEIARGVFNDYNFKEIRTPMFESYELFSRATGETSDIVTKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P         +  +      +  P   +     FR E      + +  
Sbjct: 68  FEDKGGRHIALRPEGTASAVRAYIENKLYAPEVVKPVKLWYDAPMFRYERPQSGRLRQFH 127

Query: 154 EFLMK---------DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           +F ++         D     +     +          L     +  +    +A    I  
Sbjct: 128 QFGVECLGVKNPAVDVEIIAMADTLFRQLGITGLKLALNTLGDMESRMAYRQA---LIDY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               E  +  D+           +D     +     +  ++   + + +  Y        
Sbjct: 185 LTPFENQLSEDSRRRLNENPLRVLDSKEAEDIAIVKNAPAILDYLNEASKAYFEEVKALL 244

Query: 265 EKLF-DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYG 318
           E L  +   +   V         IF F     G   ++     + G           ++G
Sbjct: 245 EALHIEYTIDPNMVRGLDYYNDTIFEFIVDFDGKDLTVCGGGRYDGLVEYFDGPATPAFG 304

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G       +I    +        +  P +   + I    +       K+   L +    
Sbjct: 305 FGLGIERLLMIAQKQEI-------NFIPEETLDVYIAVMGEKANLEATKLAESLREQAFK 357

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           V  D    ++G+QF  A+ LG  L + +G   +   ++++KH  T  + + +L+ V
Sbjct: 358 VERDFSNRKLGAQFKTAEKLGAELIITLGEDEIRTGQIKVKHNQTRKQVETTLKAV 413


>gi|330834490|ref|YP_004409218.1| Ser-tRNA(Thr) hydrolase [Metallosphaera cuprina Ar-4]
 gi|329566629|gb|AEB94734.1| Ser-tRNA(Thr) hydrolase [Metallosphaera cuprina Ar-4]
          Length = 386

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 61/200 (30%), Gaps = 5/200 (2%)

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           I  +   ++     Y   +      L  + PE + +         I  +     L   + 
Sbjct: 167 IERVKRDLKAIGVVYGEVNVTGYINLEFTKPEGRELPCVNENPVMIATYRGDGQLNYPSD 226

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQV 360
           F  ++ +    +  +  I                +       +    I +  +K    + 
Sbjct: 227 FSDSENRYWIWKRENGSIKINLGSLLYYLLLTSKEKQTPSLPLWLSPIHVRVLKLTESEE 286

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                      L + G  V  DD+ E IG +   A +   P   IVG + +    + +K 
Sbjct: 287 VDKFSLS----LKERGIRVQVDDLDEGIGKKIRRAGMDWIPYVAIVGERELQTKNLTVKV 342

Query: 421 RLTGIREDMSLEEVINYASH 440
           R    ++ M++EE+      
Sbjct: 343 RDGSEQKPMTVEELEKVVRE 362


>gi|217964333|ref|YP_002350011.1| histidyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|217333603|gb|ACK39397.1| histidyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|307571101|emb|CAR84280.1| hisS [Listeria monocytogenes L99]
          Length = 425

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/422 (13%), Positives = 113/422 (26%), Gaps = 30/422 (7%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            +    +         E+  P  +  +L+        D   KE
Sbjct: 5   LPRGTRDILPEEVSKWHFLETEFKNVCENFQYEEIRTPVFEHTELFERGVGDSTDIVSKE 64

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +   F  H      + P   Y  +  FR E        R
Sbjct: 65  MYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGG---R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF- 210
            R+F      +                   +  F ++GL +I +   S            
Sbjct: 122 QRQFTQMGIEALGSDDPSIDVEV---ISLAMTFFKKIGLTNIKLVINSLGDKESRLKHRE 178

Query: 211 ----IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E    C       P+   +   D    L              S  + E 
Sbjct: 179 ALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFEN 238

Query: 267 LFDSLP------ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           + + L       E      RG++      F   +      + T     G+ H +     G
Sbjct: 239 VKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGG 298

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                +   +               +   K   + +             +  +L + G  
Sbjct: 299 PDTPGMGFGIGVERILLALEKADIEIPAKKPLEVYVITAQPEAELKAVTLVNKLRQNGIS 358

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              D +  +  +Q   A+       +I+G + +     ++K+  TG +E +S   ++   
Sbjct: 359 AEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEAVSETTILEKL 418

Query: 439 SH 440
           ++
Sbjct: 419 TN 420


>gi|307566163|ref|ZP_07628618.1| glycine--tRNA ligase [Prevotella amnii CRIS 21A-A]
 gi|307345128|gb|EFN90510.1| glycine--tRNA ligase [Prevotella amnii CRIS 21A-A]
          Length = 517

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 114/364 (31%), Gaps = 66/364 (18%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   A+ + K  +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 198 FSTEMGSTAEGSQKIYLRPETAQGIFVNFLNVQKTGRMKLPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           V R REF   +   F   P      +       L     LG              GD ++
Sbjct: 258 VFRMREFEQMEMQFFCQ-PGTEMKWFEYWKAHRLAWHEGLG-------------MGDENY 303

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            F                                           A YA  +      L 
Sbjct: 304 RFHDH-------------------------------------DKLAHYANAATDIEFHLP 326

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               E + + +R            K+S      F     +++   +    IG  R+  +V
Sbjct: 327 FGFKEIEGIHSRTNFDLSQHE---KFSGRQIKYFDPELNENYTPYVVETSIGVDRMFLSV 383

Query: 329 IESSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           +  ++  + +           P+ +AP K +++ +   D    +  ++I   L       
Sbjct: 384 MCHAYQEEKLDNGSSRIVLKLPEPLAPIKCAVLPLVNKD-GLPEKAQEIVNDLK-FHFTT 441

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              +  + IG ++   D +G P  V V    +S+  V +++R T  +E + + ++     
Sbjct: 442 HM-EAKDSIGKRYRRQDAIGTPFCVTVDGNTLSEGTVTLRYRDTMEQERVPISKLREIIE 500

Query: 440 HRFS 443
            R S
Sbjct: 501 DRVS 504


>gi|319896698|ref|YP_004134891.1| histidyl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|301169071|emb|CBW28668.1| histidyl tRNA synthetase [Haemophilus influenzae 10810]
 gi|317432200|emb|CBY80552.1| histidyl-tRNA synthetase [Haemophilus influenzae F3031]
          Length = 423

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 67/412 (16%), Positives = 129/412 (31%), Gaps = 27/412 (6%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y     FR E   +    +  +  ++     +  
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWYI-GPMFRHERPQKGRYRQFHQVGVEVFGIANPE 138

Query: 167 PEGSKHSYNKMFVSYLRIFHR-------LGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +             L I          +G         S  +G   +H+ ++  +  E 
Sbjct: 139 IDAELIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLENHQDLMSDEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVS 278
            V      +D   P      D+   L   ++  + A +     + +          K V 
Sbjct: 199 LVRNPLRILDTKNPELQKVLDNAPKLLDYLDDESRAHFEQLCSLLDAVGIQYEINPKLVR 258

Query: 279 ARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   +F       G + ++     + G       H      + +G  R+V  V E 
Sbjct: 259 GLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAMGLERLVLLVQEV 318

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           + +       D    ++     +        +  EK+ + L     +            Q
Sbjct: 319 NPNIPAKSAVDIYVVYQGEGATL-----AAFELAEKVRSELP--HLNTMLHCSSGNFKKQ 371

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
           F  AD  G  L +++G   V + +V +KH   G  ++ + L  +I+Y   +F
Sbjct: 372 FKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVNIIDYLQTQF 423


>gi|241948893|ref|XP_002417169.1| glycyl-tRNA ligase, putative; glycyl-tRNA synthetase, putative
           [Candida dubliniensis CD36]
 gi|223640507|emb|CAX44761.1| glycyl-tRNA ligase, putative [Candida dubliniensis CD36]
          Length = 652

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/287 (12%), Positives = 79/287 (27%), Gaps = 20/287 (6%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
            +   + + +              ++         E +  AD     +          + 
Sbjct: 343 VDPNRLRFRQHMSNEMAHYASDCWDAELETSYGWIECVGCADRSAYDLSVHSARTGEKLV 402

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE---------NKRVSARGIEV 284
           +  T  +     N  +E     +          +   L            K ++ +G  V
Sbjct: 403 ARETLAEPRTVENFEIEIAKKKFGPKFRKDAGTVEKWLTSRTQCELEDMGKELNEKGKIV 462

Query: 285 GHIFYFGTKYSLPMSATFKG-----ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
             I        L                ++    +     G  R++ ++ E     +   
Sbjct: 463 AQIKDVEGDVELDGDLIKIDKVKRTEHVREFVPNVIEPSFGIGRILYSIFEHQFWCRPDD 522

Query: 340 WPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
               V      +   K      +++   +   +K+   L K       DD    IG ++A
Sbjct: 523 ADRGVLSLPPIVAPTKVLLVPLSNNSELQPIVKKVSQALRKEKIPFKVDDSSASIGKRYA 582

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             D LG P  + +    V D  V ++ R +  +   S++E++     
Sbjct: 583 RNDELGTPFGITIDFDSVKDDSVTLRERDSTKQVRGSIQEIVEAIKD 629



 Score = 44.3 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G++ + P G    +NV    R+        +E+    L   D+   SG  D +   M +
Sbjct: 36 AGLFDFGPPGCAFQNNVIDAWRKHFILEEDMLEVEATMLTPHDVLKTSGHVDRFSDWMCK 95


>gi|332880939|ref|ZP_08448609.1| glycine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681113|gb|EGJ54040.1| glycine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 513

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 89/244 (36%), Gaps = 29/244 (11%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           +   +T +         + F   +      + ++         A  A+  + H    F  
Sbjct: 279 LQWFETWKKTRMAWHQALGFGAENYRFHDHEKLAHY-------ANAASDIEFHMPFGFKE 331

Query: 271 LPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           +         GI     F      KYS      F     + +   +    IG  R+  ++
Sbjct: 332 V--------EGIHSRTNFDLSQHAKYSGKKIEYFDPETNESYTPYVIETSIGVDRMFLSI 383

Query: 329 IESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           +  S++ + +           P+++AP K++++ +   D    +   +I + L     + 
Sbjct: 384 MCHSYEEEKLENGETRVVLKLPEALAPVKLAVMPLVKKD-GLPEKAHEIISNLR-FHFNC 441

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+    IG ++   D +G P  V V    + D+ V ++HR T  ++ +++ ++     
Sbjct: 442 KYDEKD-SIGKRYRRQDAIGTPYCVTVDYDTLKDNTVTLRHRDTMEQKRVNIADLQGIIE 500

Query: 440 HRFS 443
            R S
Sbjct: 501 DRVS 504


>gi|330996112|ref|ZP_08320005.1| glycine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329573883|gb|EGG55464.1| glycine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 513

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 89/244 (36%), Gaps = 29/244 (11%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           +   +T +         + F   +      + ++         A  A+  + H    F  
Sbjct: 279 LQWFETWKKTRMAWHQALGFGAENYRFHDHEKLAHY-------ANAASDIEFHMPFGFKE 331

Query: 271 LPENKRVSARGIEVGHIFYFGT--KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           +         GI     F      KYS      F     + +   +    IG  R+  ++
Sbjct: 332 V--------EGIHSRTNFDLSQHAKYSGKKIEYFDPETNESYTPYVIETSIGVDRMFLSI 383

Query: 329 IESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           +  S++ + +           P+++AP K++++ +   D    +   +I + L     + 
Sbjct: 384 MCHSYEEEKLENGETRVVLKLPEALAPVKLAVMPLVKKD-GLPEKAHEIISNLR-FHFNC 441

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +D+    IG ++   D +G P  V V    + D+ V ++HR T  ++ +++ ++     
Sbjct: 442 KYDEKD-SIGKRYRRQDAIGTPYCVTVDYDTLKDNTVTLRHRDTMEQKRVNIADLQGIIE 500

Query: 440 HRFS 443
            R S
Sbjct: 501 DRVS 504


>gi|300691805|ref|YP_003752800.1| histidyl-tRNA synthetase (histidine--tRNA ligase) [Ralstonia
           solanacearum PSI07]
 gi|299078865|emb|CBJ51526.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) [Ralstonia
           solanacearum PSI07]
          Length = 432

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/428 (12%), Positives = 110/428 (25%), Gaps = 36/428 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      ++ +  +R      G  ++  P ++   L+V   G   D   KEM  
Sbjct: 9   GMNDLLPGDAPLWEHFDNAVRSMLRAYGYQQIRTPIVEHTQLFVRGIGEVTDIVEKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   +     FR E   R    R R+F
Sbjct: 69  FTDSLNGEQLTLRPEGTAAAVRAVIEHNLLYDGPKRLWYTGPMFRHERPQRG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG--------LKSIPMRAESGPIGGDLS 207
                 +              M          +G         ++    A    +   L 
Sbjct: 126 HQVGVEALGFAGPDIDAEVILMCQRLWDDLGLVGLKLELNSLGQAEEREAHRVDLIKYLE 185

Query: 208 HEFIVLADTGETQVFCSK-DFMDFPIPSENTDFDDIISL--NSIVEQWTAPYAA----TS 260
               +L + G+ +++ +    +D   P+          L      E             +
Sbjct: 186 GFQDILDEDGKRRLYTNPLRVLDTKNPALQEMAASAPKLIDYLGDESRKHFEGVQTLLKA 245

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +     +   L          +        G + ++     +     +       + G  
Sbjct: 246 NNIPYTINPRLVRGLDYYNLTVFEWTTDKLGAQGTVAGGGRYDPLIEQIGGKPAPACGWA 305

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                   +                   + +++     Q+          RL   G DV 
Sbjct: 306 MGVERIIELLR-----EEHLAPEPQGCDVYIVHQGDQAQMQALVA---AERLRDAGLDVI 357

Query: 381 W----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSLE 432
                +       SQF  AD  G    VI+G   V+    ++K          ++ +  +
Sbjct: 358 LHCSPEGRNGSFKSQFKRADASGASYAVIIGDDEVAAGVAQVKPLRGDPNADAQQTVPSD 417

Query: 433 EVINYASH 440
           ++++    
Sbjct: 418 QLVDRLID 425


>gi|163848486|ref|YP_001636530.1| histidyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222526415|ref|YP_002570886.1| histidyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
 gi|163669775|gb|ABY36141.1| histidyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222450294|gb|ACM54560.1| histidyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
          Length = 438

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 62/437 (14%), Positives = 119/437 (27%), Gaps = 35/437 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+   LP        +   +       G   +  P ++ A+     G+     K + R  
Sbjct: 9   GMRDHLPADMMLRQYIVNTLTRISESHGFEPLQTPIIEYAETLE--GKLGDEEKLIYRFE 66

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D   + +         +  +   +      LP+  Y     +R E   R    R REF  
Sbjct: 67  DHGGRRLALRYDQTVPLARVTAQYA-GQLTLPWRRYAYGPSYRGERPARG---RYREFYQ 122

Query: 158 KDAYSF-DLTPEGSKHSYNKMFV-----------SYLRIFHRLGLKSIPMRAESGPIGG- 204
            D       +P         +             + L     +G  +          GG 
Sbjct: 123 FDLDIVGSASPLADAEIVAMLCEALTALGFPGFVTLLNHRQIIGGIARVSGLSEEAAGGV 182

Query: 205 -DLSHEFIVLADTGETQVFCSKDFMDFPIPS----------ENTDFDDIISLNSIVEQWT 253
                +F  +   G                            +   D +    +  E+  
Sbjct: 183 YRAIDKFDKIGADGVRAELIKSGVTPAAADQILELVQIDGTADEVLDALAQKLAADERAV 242

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS----LPMSATFKGADGKD 309
           A  A    V +  +   +P  +   A  +  G  +Y G  +          +  G    D
Sbjct: 243 AAIANLRAVLDGLMAMGVPAEQYRVAPRLARGLSYYTGVVFEAITPHWPEGSLLGGGRYD 302

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           H + + +        +A  I+  HD    +                   +   +   ++ 
Sbjct: 303 HLIGLFAGRNIPTVGLAFGIDRLHDVMIELNLGPRPQTTALAFVTLFGAEQVAE-SLRLA 361

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           A L   G +         IG QF  AD  G    +++G   ++  +V IK    G +  +
Sbjct: 362 AELRAAGINTLIALEPGNIGKQFKEADRRGVRFALVLGPDELARGEVVIKDLQRGEQRSL 421

Query: 430 SLEEVINYASHRFSNNR 446
                I+  +   S  +
Sbjct: 422 PRAAAISLLAEALSEGK 438


>gi|303319141|ref|XP_003069570.1| glycyl-tRNA synthetase, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240109256|gb|EER27425.1| glycyl-tRNA synthetase, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 698

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 85/285 (29%), Gaps = 25/285 (8%)

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +              ++  +      E +  AD     +   K+    P+    T  + 
Sbjct: 395 RQHMANEMAHYATDCWDAELLSSYGWIECVGCADRSAYDLSVHKNKTGAPLVVRETRAEP 454

Query: 242 IISLNSIVEQWTAPYAA---TSDVHNEKLFDSLPENKR--------------VSARGIEV 284
           +      V+     +           E   D+L +  R              +   G+  
Sbjct: 455 LRIEEWQVDIDRKKFGPRFKKDGKTVEAAIDALSQELREKLALDLDKDGKITIDVEGVND 514

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           G +   G         T    + +++   +     G  R++  ++E  +  +       V
Sbjct: 515 GKV-EIGKDLVKIEKRTRV-ENIREYTPNVIEPSFGIGRILYCLMEHVYWSREGDEARGV 572

Query: 345 APFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             F       K      +  Q  +    K+  +L ++G     DD    IG ++A  D L
Sbjct: 573 LSFPPLAAPTKVLLVPLSSHQSFQPLVRKLTLKLRRMGVSNRVDDSSASIGKRYARNDEL 632

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  + V  + V D+   ++ R +  +   S +E+         
Sbjct: 633 GTPFGITVDFQSVKDNTFTLRDRDSMKQVRASEDEICKAVKSLVE 677



 Score = 47.8 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G++ + P G     N+  + R+        +E+    L   ++   SG  D +   M +
Sbjct: 80  SGLFDYGPPGCALQANIVDLWRKHFVLEEDMLEVDCTMLTPHEVLKTSGHVDKFADWMCK 139


>gi|83592087|ref|YP_425839.1| histidyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
 gi|123753289|sp|Q2RWE3|SYH_RHORT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|83575001|gb|ABC21552.1| histidyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
          Length = 415

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/417 (15%), Positives = 126/417 (30%), Gaps = 22/417 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G + +LP   ++  +V    R    R G  E+  P  +  D++  +     D   KEM  
Sbjct: 9   GTHDYLPDEARSHRHVEETARTVAERFGFGEIITPIFEFTDVFARTLGDTSDVVTKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR+  ++   P +   +   F S     +N+P   +     FR E   +    R R+F
Sbjct: 69  FTDRSGDSLTLRPENTAGVARAFISGGL-AQNVPVKLFYRGPMFRHERPQKG---RLRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA- 214
                         +      +    L      G   + + +   P   +     +V   
Sbjct: 125 HQVGVELIGAENPLADVEVIALGSQLLGALGVGGRTILHLNSLGDPESREAYRAALVSYL 184

Query: 215 ---------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                    D+ E         +D     +         L   + + +  + A      E
Sbjct: 185 SGHRDSLSRDSLERLERNPLRVLDSKDEGDRAVVAGAPRLIDHLNEASRAFFAGVTGGLE 244

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            L      +  +       GH  +      L    T       D  ++            
Sbjct: 245 ALGIPFEIDPLLVRGLDYYGHTAFEFVTTDLGAQGTVMAGGRYDGLIRQMGGSQTPGVGW 304

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           AA +E            +  P    +I     D+V      K+   L + G  V +   G
Sbjct: 305 AAGVERLSMLMAADRVGAPRPLA--MIPAGPDDEV---EALKLAHALRQGGLFVDFGYSG 359

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             +G +   A+ +     +I+G +  ++  V ++   +G +E + L  +  + +   
Sbjct: 360 -NLGKRMKRANRINARAAIILGGEERANGTVVVRDLDSGEQETIGLAVLEEFLARFL 415


>gi|323143785|ref|ZP_08078453.1| histidine--tRNA ligase [Succinatimonas hippei YIT 12066]
 gi|322416498|gb|EFY07164.1| histidine--tRNA ligase [Succinatimonas hippei YIT 12066]
          Length = 425

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/427 (14%), Positives = 123/427 (28%), Gaps = 33/427 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DSYGKEMLR 95
           G+   LP        V +I+RE     G  E+ +P L+   L+    G   D   KEM  
Sbjct: 10  GMNDLLPEDTSVWQQVESILRETVASFGYSEIRLPILEKTPLFCRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR+ + +   P            H   Y      +Y +   FR E   +    R R+F
Sbjct: 70  FEDRSGEMLSLRPEGTAGCVRACLEHNLIYNQEQRLWY-MGPMFRHERPQKG---RYRQF 125

Query: 156 LMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                  F    P+            + ++     L        +         E +   
Sbjct: 126 HQLGVEIFGLKGPDIDAEIIMLTHALWKKLGIADDLSLELNTLGTKEERKAFRDELVSYL 185

Query: 215 DT--GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL- 271
           +    E      +     P+   ++    +  +     + +  +   +  H E L   L 
Sbjct: 186 EAHFDELDEDSKRRTHTNPLRVLDSKDPKVGEVLKGAPKLSDHFGEETKAHFEGLKKLLD 245

Query: 272 -------PENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                    N+ V         +F       G + ++     + G   +       + G 
Sbjct: 246 AAGIKYTINNRLVRGLDYYNLTVFEWVTTALGAQGTVCGGGRYDGLVEELGGTATPAVGF 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GC 377
           G       ++        +          + +  + + +   ++       +L     G 
Sbjct: 306 GMGLERLMLLL-------VTLGKVKTKPSVDVYIVGSGENSAKEQAMT-ALKLRDALPGV 357

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVIN 436
            +     G     QF  AD +G  + V++G   ++   + +K  R  G +++      + 
Sbjct: 358 RIMNHCGGGNFKRQFKRADKVGAKVAVVLGEAEIASGTLGVKDLRNEGSQQEYDFAGAVA 417

Query: 437 YASHRFS 443
             S    
Sbjct: 418 AISKMLQ 424


>gi|226939615|ref|YP_002794688.1| histidyl-tRNA synthetase [Laribacter hongkongensis HLHK9]
 gi|254782334|sp|C1DD44|SYH_LARHH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|226714541|gb|ACO73679.1| Syh [Laribacter hongkongensis HLHK9]
          Length = 423

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/425 (12%), Positives = 111/425 (26%), Gaps = 30/425 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +    ++R      G   +  P ++S  L++ S G   D   KEM  
Sbjct: 10  GMNDILPAESHQWEYFEGVLRGLLADYGYQNIRTPIVESTPLFIRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +         T           N     +     FR E   +    R R+F
Sbjct: 70  FTDSLNGDSLTLRPEGTAGTLRAVVEHNLLYNTTQKLWYTGPMFRHERPQKG---RYRQF 126

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +              M     +         + +             E ++   
Sbjct: 127 HQIGIEALGFAGPDIDAEIILMTADLWKRLGISDFVQLEINTLGNKEERAAHREALIKYL 186

Query: 216 TGETQVF---CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE------- 265
            G   +      +     P+   +T    +  + +   +      A S  H +       
Sbjct: 187 EGHVDILDEDGKRRLYTNPLRVLDTKNPAMQDMANQAPRLIDYLGAESRAHYDGWKAMIE 246

Query: 266 ------KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                      L        + +        G + ++     + G   +         G 
Sbjct: 247 AVGIRYVENPRLVRGLDYYNQSVFEWVTTELGAQGTVCAGGRYDGLTEQIGGKPAPGIGF 306

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G       ++ +  D                 + I    +       ++   L   G  V
Sbjct: 307 GMGMERVLLLLADKDLLPARKAA--------DVYIVQQGEGAPVYAMQLAQDLRAAGLSV 358

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYA 438
                     SQ   AD  G    ++VG   +   +V +K  R    ++ ++  +++++ 
Sbjct: 359 IQHLGEASFKSQMKKADQSGARWALVVGENEIRQQQVAVKPLRDGTEQQTVARTDIVSHL 418

Query: 439 SHRFS 443
           + R +
Sbjct: 419 AGRMA 423


>gi|269119758|ref|YP_003307935.1| histidyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
 gi|268613636|gb|ACZ08004.1| histidyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
          Length = 414

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/403 (13%), Positives = 122/403 (30%), Gaps = 23/403 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            D +    +   ++ G  ++  P ++  +L+        D   KEM    D+  +++   
Sbjct: 19  YDYIIDSAKNVFSKYGFEKIITPIVEETELFERGVGEETDVVSKEMYTFLDKAGRSITMR 78

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDLT 166
           P     +   +        +    ++     +R E   +    R REF            
Sbjct: 79  PEGTAGVVRAYLQAGLYKSDPLVKWFYYGPMYRYEAPQKG---RYREFHQVGVEAFGVRD 135

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG-----DLSHEFIVLADTGETQV 221
           P                   +     I     S              E  +       + 
Sbjct: 136 PFADAEIIKMGCEFLETAGIKNLTVEINSLGNSSSRQRYTAELKKFIEERLDKLCDNCKT 195

Query: 222 FCSKD---FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
              K+    +D    +    + +   L   +++ ++ Y      + E L  +  EN R+ 
Sbjct: 196 RYKKNPLRVLDCKSEACQEQYKNAPVLKDYLDEESSTYYEELKKYLELLEVNYVENYRL- 254

Query: 279 ARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            RG++     +F   ++     S    G         +G   +  +   A     +    
Sbjct: 255 VRGLDYYSDTVFEIKSENLGAQSTVLAGGRYDKLLEILGDIQMPGIGFAAGTERIALLMD 314

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
             +  +   P  +            ++    I   L + G  V +D   +   SQ   A 
Sbjct: 315 ESLLKEEEKPVYVVYFP------ETKEYALNIIKILRENGIKVDFDYGMKSFKSQMKKAG 368

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            L     +I+G    +++K  +K+  TG +E + +E+VI   +
Sbjct: 369 KLNSKYVIILGEDEKNENKAVLKNFDTGEQEKLEIEKVIERVN 411


>gi|70606652|ref|YP_255522.1| glycyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
 gi|68567300|gb|AAY80229.1| glycyl-tRNA synthetase class II [Sulfolobus acidocaldarius DSM 639]
          Length = 574

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 64/141 (45%), Gaps = 7/141 (4%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW----PDSVAPFKISLINIKAHDQVCR 362
           G+     +     G  R +   + +S+  K        P  ++P+ I++  +   D++ +
Sbjct: 422 GERVIPHVIEPSFGVERCLYLTLLNSYMEKDGRIILSLPKRLSPYDIAIFPLLEKDELIK 481

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +IY  L +   D+ +DD G  IG ++A  D +G P  + V    ++D+ V I+ R 
Sbjct: 482 -KAREIYDSLKER-YDIIFDDSG-SIGKRYARVDEIGVPYSITVDPMTLTDNTVTIRDRD 538

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +  +  +++ +++N     F 
Sbjct: 539 SWQQIRVNITDLMNVLDRLFK 559



 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTG---AIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G+Y   P+G +  + +  + R+   +      +E+  P L    +   SG  D++   +
Sbjct: 29  AGLYDIGPIGVRIKNKIVDLWRKHFIKDNSDFVVEIDTPALTPYKVLEASGHVDNFTDPV 88

Query: 94  LRLADRND 101
           +     ++
Sbjct: 89  VECNSCHN 96


>gi|145632616|ref|ZP_01788350.1| histidyl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|229844543|ref|ZP_04464683.1| histidyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
 gi|144986811|gb|EDJ93363.1| histidyl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|229812792|gb|EEP48481.1| histidyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
          Length = 423

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 134/416 (32%), Gaps = 35/416 (8%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y     FR E   +    +  +  ++     +  
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWYI-GPMFRHERPQKGRYRQFHQVGVEVFGIANPE 138

Query: 167 PEGSKHSYNKMFVSYLRIFHR-------LGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +             L I          +G         S  +G   +H+ ++  +  E 
Sbjct: 139 IDAELIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLENHQDLMNDEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKR 276
            V      +D   P      D+   L   ++      + T       L D++    E   
Sbjct: 199 LVRNPLRILDTKNPELQKVLDNAPKLLDYLDDE----SRTHFEQLCSLLDAVGIQYEINP 254

Query: 277 VSARGIEV--GHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAA 327
              RG++     +F       G + ++     + G       H      + +G  R+V  
Sbjct: 255 KLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAMGLERLVLL 314

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           V E + +       D    ++     +        +  EK+ + L     +      G  
Sbjct: 315 VQEVNPNVPAKSAVDIYVVYQGEGATL-----AAFELAEKVRSELP--HLNTMLHCSGGN 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
              QF  AD  G  L +++G   V + +V +KH   G  ++ + L  +I+Y   +F
Sbjct: 368 FKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVNIIDYLQTQF 423


>gi|55379745|ref|YP_137595.1| histidyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|68052895|sp|Q5UXW4|SYH_HALMA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|55232470|gb|AAV47889.1| histidyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 435

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 136/427 (31%), Gaps = 42/427 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P   +A       + +   R G  E+  P L+  +++  +SG  +   +E+   
Sbjct: 7   GFRDFYPKEMQARRWAMDTLEDVAQRYGFREIGTPALEPTEMYVDKSG--EEIVEELYSF 64

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +  +F +  +   + P  +   +  +R E  P+ G  R  EF 
Sbjct: 65  EDKGGRKVALTPELTPTVARMFVAKQQ-ELSKPIKWVSTRPFWRYE-EPQQGRFR--EFY 120

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +   F      +      + V  L      G      R     I   +   F    D 
Sbjct: 121 QTNVDIFGSAEPTADAEILAVAVDMLTDLGLTGEDFEI-RVSHRDILSGVLESFEADVDV 179

Query: 217 GE-------TQVFCSKDFMDFPIPSENTD-----FDDIISLNSIVEQWTAPYAATSDVHN 264
            E              +++D    +  +      FD+++ +++   +       + DV  
Sbjct: 180 PEAIRAVDKRAKVDHDEYLDALAEAGLSYGQADTFDEMLQIDAEEIETLGDLTGSEDVRT 239

Query: 265 E-----KLFDSLPENK--------RVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKD 309
                  + D+  +            +ARG++   G +F           + F G    D
Sbjct: 240 ATDNLQAVLDAAEDFGVREHLTVSLTTARGLDYYTGVVFECFDSTGEVSRSVFGGGRYDD 299

Query: 310 HYVQMGSYGIGAMRVV--AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
                G     A+      A ++      G+   + ++     L          R    +
Sbjct: 300 LIEGFGGQPTPAVGFAPGHATLQLLCQRAGVWPAEELSTDYYVLQVGDT-----RPTAAR 354

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           I   L + G  V  D      G+Q   AD +     VIVG + + + +V +K    G + 
Sbjct: 355 IARDLRERGHVVESDVADRSFGAQMGYADGINAETVVIVGEQDLENDEVTLKEMDDGEQV 414

Query: 428 DMSLEEV 434
            + L   
Sbjct: 415 SVPLSAF 421


>gi|332665395|ref|YP_004448183.1| glycyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
 gi|332334209|gb|AEE51310.1| glycyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
          Length = 516

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 78/257 (30%), Gaps = 19/257 (7%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       GE   +                           +       A 
Sbjct: 260 FRMREFEQMEMQFFIRPGEEMKWYDYWKQTRMNWHLKIGTPAEKLRFKDHDNLAHYANAA 319

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            D+  E  F    E + + +R            + S      F     +++   +    +
Sbjct: 320 VDIQYEFPF-GFKELEGIHSRTNFDLSSHQ---ELSGKKLQYFDPELNENYVPYVVETSV 375

Query: 320 GAMRVVAAVIES-------------SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           GA R+  A++                     +    ++AP K++++ +  + +    A  
Sbjct: 376 GADRMFLAMMSESLKEESVPDAKGEDSTRVVMKLHPALAPVKVAVLPLLKNREELVKAST 435

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            ++ +L        +D+    IG ++   D +G P  V +  + + ++ V I+ R +  +
Sbjct: 436 DVFNKLK-FSFQCQYDEKDA-IGRRYRRQDAIGTPYCVTIDFETLENNTVTIRERDSLKQ 493

Query: 427 EDMSLEEVINYASHRFS 443
           E + ++ +      R  
Sbjct: 494 ERVHIDRIEEIVRQRVD 510



 Score = 39.7 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 8/77 (10%)

Query: 30 GMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWV 81
          G I Q S        +Y + P G +  +N+         +     + +          W 
Sbjct: 19 GFIFQSSEIYDGLAAVYDYGPYGVELKNNIKDYWWAAMVQMHDNIVGLDAAIFMHPKTWK 78

Query: 82 ESGRYDSYGKEMLRLAD 98
           SG  D++   ++   D
Sbjct: 79 ASGHVDAFNDPLVDNKD 95


>gi|329123605|ref|ZP_08252165.1| histidine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
 gi|327469804|gb|EGF15269.1| histidine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
          Length = 423

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 129/412 (31%), Gaps = 27/412 (6%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y     FR E   +    +  +  ++     +  
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWYI-GPMFRHERPQKGRYRQFHQVGVEVFGIANPE 138

Query: 167 PEGSKHSYNKMFVSYLRIFHR-------LGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +             L I          +G         S  +G   +H+ ++  +  E 
Sbjct: 139 IDAELIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLENHQDLMSDEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVS 278
            V      +D   P      D+   L   ++  + A +     + +          K V 
Sbjct: 199 LVRNPLRILDTKNPELQKVLDNAPKLLDYLDDESRAHFEQLCSLLDAVGIQYEINPKLVR 258

Query: 279 ARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   +F       G + ++     + G       H      + +G  R+V  V E 
Sbjct: 259 GLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAMGLERLVLLVQEV 318

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           + +       D    ++     +        +  EK+ + L     +      G     Q
Sbjct: 319 NPNVPAKSAVDIYVVYQGEGATL-----AAFELAEKVRSELP--HLNTMLHCSGGNFKKQ 371

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
           F  AD  G  L +++G   V +  V +KH   G  ++ + L  VI+Y   +F
Sbjct: 372 FKRADKSGATLALVIGESEVQNKLVVVKHLQGGADQQTLDLVNVIDYIQTQF 423


>gi|255943789|ref|XP_002562662.1| Pc20g01010 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587397|emb|CAP85430.1| Pc20g01010 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1334

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 8/146 (5%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII-------WPDSVAPFKISLINIKAH 357
            + +++   +     G  R++ +VIE S+  +          +P ++AP K+ L+ +  H
Sbjct: 491 ENVREYTPNVIEPSFGIGRILYSVIEHSYWYRAGDETRGVLSFPPAIAPTKVLLVPLSTH 550

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               +   +++ ++L K G     DD    IG +++  D LG P  V V  + V D+   
Sbjct: 551 -ASFKPLTQRLTSKLRKAGVSNRVDDSSASIGKRYSRNDELGTPFGVTVDFQSVQDNTFT 609

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           ++ R T  +   S +E++        
Sbjct: 610 LRDRDTTKQVRASEDEILQAVKSLVE 635



 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 26 MLRTGMIHQHS-------KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
          MLR  M +  S        G+Y + P G   + N+  + R+        +E+    L   
Sbjct: 20 MLRRRMFYTPSFEIYGGVSGLYDYGPPGTALIANMTDLWRKHFVLEEDMLEVDTTMLTPH 79

Query: 78 DLWVESGRYDSYGKEMLR 95
          ++   SG  D +   M +
Sbjct: 80 EILKTSGHVDKFADWMCK 97


>gi|194290005|ref|YP_002005912.1| histidyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|229558653|sp|B3R1K1|SYH_CUPTR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|193223840|emb|CAQ69849.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
           [Cupriavidus taiwanensis LMG 19424]
          Length = 456

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 67/427 (15%), Positives = 117/427 (27%), Gaps = 31/427 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      ++     R      G  ++  P ++   L+V   G   D   KEM  
Sbjct: 30  GMNDMLPADAPLWEHFENAARAMLRAYGYQQIRTPIVEHTQLFVRGIGEVTDIVEKEMYS 89

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   +     FR E   R    R R+F
Sbjct: 90  FTDSLNGEQLTLRPEGTAAAVRATIEHNLLYDGPKRLWYTGPMFRHERPQRG---RYRQF 146

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
               A +              M       +  LGL  + +   S           E ++ 
Sbjct: 147 HQLGAEALGFAGPDVDAEIILMCQRL---WDDLGLTGVRLEINSLGQADERAAHREQLIK 203

Query: 214 ADTGETQVF---CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
              G   +      +     P+   +T    +  + +   +        S  H E +   
Sbjct: 204 YLEGFQDILDDDSKRRLYTNPLRVLDTKNPALQDMAANAPKLIDFLGEESLAHFEGVQRL 263

Query: 271 LPENKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           L  N           RG++  ++  F       + A    A G  +   +   G      
Sbjct: 264 LKANNIPFKINPRLVRGLDYYNLTVFEWITDK-LGAQGTIAGGGRYDPLIAQMGGKPAPA 322

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW--- 381
               +      + I     V       + +    +           RL   G DV     
Sbjct: 323 CGWAMGIERIIELIREEGVVPDAVGCDVYLVHQGEAAAQQAMVAAERLRDAGLDVVLHAS 382

Query: 382 -DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV---EIKHR----LTGIREDMSLEE 433
            D  G    SQ   AD  G    VI+G   V+   V   E++ R      G +  +  + 
Sbjct: 383 PDGKGGSFKSQMKRADASGAAYAVIIGDDEVAAGVVQVKELRQREQAEGGGQQATVPADG 442

Query: 434 VINYASH 440
           +++Y   
Sbjct: 443 LVDYLID 449


>gi|302761720|ref|XP_002964282.1| hypothetical protein SELMODRAFT_230438 [Selaginella moellendorffii]
 gi|300168011|gb|EFJ34615.1| hypothetical protein SELMODRAFT_230438 [Selaginella moellendorffii]
          Length = 604

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 49/147 (33%), Gaps = 11/147 (7%)

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-------GIIWPDSVAPFKISLIN 353
                  +     +     G  R++  + E   D +        +     +       + 
Sbjct: 433 QVTKKSKEKFTPSVIEPSFGIGRIIYCLFEHCFDTRGGVDGQLNVFRFPPLVAPVKCTVF 492

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
               +         I A+L + G     D  G  IG ++A  D +G P  + V S    D
Sbjct: 493 PLVQNPKLDGIARAISAKLREAGIGNKIDTTGRSIGRRYARTDEIGVPFAITVDS---ED 549

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASH 440
             V ++ R +  +  + LEEV++  + 
Sbjct: 550 G-VTVRDRDSKDQIRVPLEEVVDLIAD 575



 Score = 48.6 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G++ + P G     NV +  R+        +E+  P L    +   SG  + +   M+R
Sbjct: 14  AGLFDYGPPGCAVKANVLSFWRQHFVVNDDLLEVDCPCLTPEAVLRASGHVEKFTDLMVR 73

Query: 96  LADRNDK 102
                  
Sbjct: 74  DVKEGHC 80


>gi|255027747|ref|ZP_05299733.1| prolyl-tRNA synthetase [Listeria monocytogenes FSL J2-003]
          Length = 90

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/90 (51%), Positives = 59/90 (65%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGP 108
            L  +  IIREE    GA E+ +P LQ A+LW ESGR++ YG E++RL DR  +    GP
Sbjct: 1   MLRKIETIIREELEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASRDFALGP 60

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
           THEEV+T + R  +KSY+ LP T YQIQ K
Sbjct: 61  THEEVITALLRDEVKSYKRLPLTLYQIQTK 90


>gi|145628725|ref|ZP_01784525.1| histidyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|144979195|gb|EDJ88881.1| histidyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
          Length = 423

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 66/412 (16%), Positives = 128/412 (31%), Gaps = 27/412 (6%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y     FR E   +    +  +  ++     +  
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWYI-GPMFRHERPQKGRYRQFHQVGVEVFGIANPE 138

Query: 167 PEGSKHSYNKMFVSYLRIFHR-------LGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +             L I          +G         S  +G   +H+ ++  +  E 
Sbjct: 139 IDAELIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSDLVGFLENHQDLMNDEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVS 278
            V      +D   P      D+   L   ++  + A +     + +          K V 
Sbjct: 199 LVRNPLRILDTKNPELQKVLDNAPKLLDYLDDESRAHFEQLCSLLDAVGIQYEINPKLVR 258

Query: 279 ARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   +F       G + ++     + G       H      + +G  R+V  V E 
Sbjct: 259 GLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAMGLERLVLLVQEV 318

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           + +       D    ++     +        +  EK+ + L     +            Q
Sbjct: 319 NPNVPAKSAVDIYVVYQGEGATL-----AAFELAEKVRSELP--HLNTMLHCSSGNFKKQ 371

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
           F  AD  G  L +++G     + +V +KH   G  ++ + L  +I+Y   +F
Sbjct: 372 FKRADKSGATLALVIGESEAQNKQVVVKHLQGGTDQQTLDLVNIIDYLQTQF 423


>gi|119498573|ref|XP_001266044.1| glycyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
 gi|119414208|gb|EAW24147.1| glycyl-tRNA synthetase [Neosartorya fischeri NRRL 181]
          Length = 656

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 86/289 (29%), Gaps = 25/289 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++  +      E +  AD     +   K+    P+       +
Sbjct: 352 FRQHMANEMAHYAADCWDAELLTSYGWIECVGCADRSAYDLTVHKNKTGAPLVVREPRAE 411

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKR-----------VSARGIE 283
            +      V+     +        + +  ++         K            V   G+ 
Sbjct: 412 PLKVEEWQVDLDKKKFGPRFKKDGKAVAAAVEALSQELREKLAIDLEKNGKIEVDVEGVG 471

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
            G +             T    + +++   +     G  R++ ++IE  +  +       
Sbjct: 472 SGKV-ELDQDIVKIEKRTRV-ENVREYTPNVIEPSFGIGRILYSMIEHVYWAREEDEARG 529

Query: 344 VAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           V  F   +   K      +     R    ++  +L ++G     DD    IG ++A  D 
Sbjct: 530 VLSFPPVIAPTKVLIVPLSTHASFRPLLLQLMTKLRRMGISNRVDDSSASIGKRYARNDE 589

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           LG P  + V  + V D+   ++ R T  +   S +E++          +
Sbjct: 590 LGTPFGITVDFQSVKDNTFTLRDRDTTKQVRASEDEILQAIRSLVDGEK 638



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G   L+N+  + R+        +E+    L   ++   SG  D +   M +
Sbjct: 38 SGLYDYGPPGTALLNNIVDLWRKHFVLEEDMLEVDCTMLTPHEILKTSGHVDKFADWMCK 97


>gi|322515836|ref|ZP_08068780.1| histidine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
 gi|322125722|gb|EFX97044.1| histidine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
          Length = 426

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/408 (13%), Positives = 109/408 (26%), Gaps = 19/408 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  + RE   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVENVARETFKKYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P   Y I   FR E        R REF       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYIGSMFRYERPQAG---RLREFHQLGVECFGS 136

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--------IGGDLSHEFIVLADT 216
             P     +    +  +  +  +     +     +          I         +  D+
Sbjct: 137 KNPATDVETIAMTYQLFNTLGIKDVTLHLNSLGNTESRLAYRQALIDYLTPMRESLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLPENK 275
                      +D     +    ++  S+   +++ +  Y        + L    + +  
Sbjct: 197 QRRLDENPLRVLDSKEKEDKVAVENAPSILDYLDEESQAYFDEVRTMLDSLNIPYVIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T            A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFVTTIDKSELT--ICAGGRYDSLVEYFGGPETAGFGFGLGLERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   +   + I            ++   +   G     D +G +I +QF  A
Sbjct: 315 VLDKQGIELPVEESLDVYIAVLGSGANGKALELVQAIRYQGFKAERDYLGRKIKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D       + +G   V   +V +K+  T     +S EE+    +    
Sbjct: 375 DTFKAKTVITLGESEVESGQVNVKNNATREEVTVSFEELTKNFAAVLK 422


>gi|66910298|gb|AAH96883.1| Si:dkey-276i5.1 protein [Danio rerio]
          Length = 764

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/283 (11%), Positives = 75/283 (26%), Gaps = 24/283 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 454 FRQHMDNEMAHYACDCWDAETKTSYGWIEIVGCADRSCYDLLCHARATKVPLVAEKPLKE 513

Query: 241 --------------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                          I        ++   Y A  D       + L           E G 
Sbjct: 514 PKVVNVVQFEPNKGAIGKAYKKDAKFAMEYLAICDECYITEQEKLLNENGEFTIETE-GK 572

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            F              K    ++    +     G  R++ ++ E +   +      +   
Sbjct: 573 TFKLTKDMVNIKRFQ-KTLHVEEVVPNVIEPSFGIGRIMYSIFEHTFRIREGDEQRTYFS 631

Query: 347 FKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           F  ++   K      + +        ++   L++ G     DD    IG ++A  D +G 
Sbjct: 632 FPATVAPYKCSVLPLSQNPEFMPFVRELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGV 691

Query: 401 PLQVIVGSKFVSDS--KVEIKHRLTGIREDMSLEEVINYASHR 441
              + +    V+ +     ++ R +  +    + E+       
Sbjct: 692 AFGITIDFDTVNKNPHTATLRDRDSMRQIRAEVGELPEIIRDL 734



 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+  + R+        +E+    L    +   SG  D +   M++
Sbjct: 170 SGLYDFGPVGCALKNNILQVWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADYMVK 229

Query: 96  LADRNDK 102
                + 
Sbjct: 230 DVKNGEC 236


>gi|317106616|dbj|BAJ53123.1| JHL07K02.13 [Jatropha curcas]
          Length = 699

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 86/294 (29%), Gaps = 30/294 (10%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--LSHEFIVLAD 215
                     +         +     +       +  +RA +   G       +F    +
Sbjct: 397 LANEMAHYATDCWDAEIECSYGWIECVGIAD-RSAYDLRAHTDKSGVSLVAQEKFAEPRE 455

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             E  +   K  +      +      I +L ++ E+      A  + H E  F     +K
Sbjct: 456 IEELVISPVKKEVGLAFKGDQRMV--IEALEAMDEREAMKMKAALESHGEVRFRICTLDK 513

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V+ +            K  + +S   K    +     +     G  R++  + E     
Sbjct: 514 DVTIK------------KNMVSISKERKKEHQRVFTPSVIEPSFGIGRIIYCLYEHCFYT 561

Query: 336 KGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           +               S+       +     +       + I   L+  G     D  G 
Sbjct: 562 RPSKAGDEQLNVFRFPSLVAPIKCTVFPLVQNPEYEQVAKHIAKLLTTAGISYKIDMTGT 621

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            IG ++A  D LG P  + V     S S V I+ R + ++  +++EEV +    
Sbjct: 622 SIGKRYARTDELGVPFAITVD----STSSVTIRERDSKVQIRVTVEEVASVIKE 671



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     NV A  R+        +E+  P +    +   SG  D +   M++
Sbjct: 108 AGLYDYGPPGCGVKSNVLAFWRQHFVLEENMLEVDCPCVTPEIVLKASGHVDKFTDLMVK 167

Query: 96  LADRNDK 102
                + 
Sbjct: 168 DEKTGNC 174


>gi|158293345|ref|XP_557743.2| AGAP008604-PA [Anopheles gambiae str. PEST]
 gi|157016660|gb|EAL40245.2| AGAP008604-PA [Anopheles gambiae str. PEST]
          Length = 703

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/414 (15%), Positives = 126/414 (30%), Gaps = 76/414 (18%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R    +   LPF   QI   FR+E+ PR G++R REF M +   F
Sbjct: 265 FLRPETAQGIFVNFKRLLEFNQGRLPFAAAQIGNSFRNEISPRSGLIRVREFTMCEIEHF 324

Query: 164 DLTPEGSKHSYNKMFVS----YLRIFHRLGLKSIPMRAESGPIGGDLSHE----FIVLAD 215
                 +   +  +  +    Y       G  +  +R       G +++E    F+    
Sbjct: 325 CDPQAKNHPKFENVADTVMTLYSACNQMDGKSAQQIRIGDAVASGLVANETLGYFMARIQ 384

Query: 216 TGETQV--------FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD---VHN 264
               ++        F      +    + +    + ++    +E       +  D     N
Sbjct: 385 MYLHRIGILPERLRFRQHMGNEMAHYACDCWDAECLTSYGWIECVGCADRSAYDLTQHTN 444

Query: 265 EKLFDSLPENKRVSARGIE----------VGHIFYFGTKYSLPMSATF-----------K 303
                 + E K  + + IE          +G  F    K      A              
Sbjct: 445 ATGVKLVAEKKLPAPKTIEVTEVVPNKAAIGKAFKKEAKAITEALAKLSLGEVETIGKSL 504

Query: 304 GADGKDHYVQMGS-----------------------------YGIGAMRVVAAVIESSHD 334
           G  G+      G+                                G  R++ +++E S  
Sbjct: 505 GDSGEHLLAVNGTDVKLTNDLIAVKTTSKTVHVEEITPSVIEPSFGIGRIMYSLLEHSFR 564

Query: 335 GKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +      S       +  +K      +++       +KI + L+ V      DD    I
Sbjct: 565 MREGDEQRSYFSLPPVVAPLKCSVLPLSNNAEFAPFVKKISSALTSVDVSHKVDDSSGSI 624

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHR 441
           G ++A  D +  P  + +    + +   V ++ R +  +  + L+EV N     
Sbjct: 625 GRRYARTDEIAIPYGITIDFDTLKEPHTVTLRERDSMKQVRIGLDEVANTIRDL 678



 Score = 42.4 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+    R+        +E+    L   
Sbjct: 97  LLKRRFFYDQSFAIYGGITGQYDFGPMGCALKSNMINTWRQFFVLEEQMLEVDCSILTPE 156

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  D +   M +     + 
Sbjct: 157 PVLKASGHVDRFADLMTKDVKNGEC 181


>gi|33322959|gb|AAQ07216.1|AF496524_1 prolyl-tRNA synthetase [Lactobacillus delbrueckii subsp. lactis]
          Length = 96

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 2/98 (2%)

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             V MGSYGIG  R+++AV+E      G+ WP  +APF I +I +K  D++     E + 
Sbjct: 1   QPVIMGSYGIGVTRLLSAVVEQHAXENGVAWPKEIAPFGIHIIQMKMKDEIQSKLAEDLE 60

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           A+      DV +DD  E+ G +F  ADL+G P+++ VG
Sbjct: 61  AKF--AKYDVLYDDRNERPGVKFNDADLVGAPIRITVG 96


>gi|260582539|ref|ZP_05850329.1| histidyl-tRNA synthetase [Haemophilus influenzae NT127]
 gi|260094350|gb|EEW78248.1| histidyl-tRNA synthetase [Haemophilus influenzae NT127]
          Length = 423

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 68/413 (16%), Positives = 128/413 (30%), Gaps = 29/413 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y     FR E   +    +  +   +     +  
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWYI-GPMFRHERPQKGRYRQFHQVGAEVFGIANPE 138

Query: 167 PEGSKHSYNKMFVSYLRIFHR-------LGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +             L I          +G         S  +G   +H+ ++  +  E 
Sbjct: 139 IDAELIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLENHQDLMSDEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-------APYAATSDVHNEKLFDSLP 272
            V      +D   P      D+   L   ++  +              D+  E +   L 
Sbjct: 199 LVRNPLRILDTKNPELQKVLDNAPKLLDYLDDESREHFEQLCSLLDAVDIQYE-INPKLV 257

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIE 330
                  + +        G + ++     + G       H      + +G  R+V  V E
Sbjct: 258 RGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAMGLERLVLLVQE 317

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            + +       D    ++     +        +  EK+ + L     +      G     
Sbjct: 318 VNPNVPVKSAVDIYVVYQGEGTTL-----AAFELAEKVRSELP--HLNTMLHCSGGNFKK 370

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
           QF  AD  G  L +++G   V + +V +KH   G  ++ + L  VI+Y   +F
Sbjct: 371 QFKRADKSGATLALVIGESEVQNKQVVVKHLQGGADQQTLDLVNVIDYIQTQF 423


>gi|171463403|ref|YP_001797516.1| histidyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192941|gb|ACB43902.1| histidyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 442

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/411 (13%), Positives = 115/411 (27%), Gaps = 14/411 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP       ++  ++R+     G   +  P +++  ++    G   D   KEM  
Sbjct: 21  GMNDLLPADAAQWAHLEHVLRDLTRAYGYEFLRTPIVEATAVFQRGIGEVTDIVEKEMYS 80

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +   +                       P   +     FR E   R    +  +F
Sbjct: 81  FEDRLNGKQLALRPEGTAALVRSVIENNLLYEGPKRLWYTGPMFRHERPQRGRYRQFHQF 140

Query: 156 LMKDAYSFDLTPEGSKH------SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            ++         +                       + LG         +  +     H+
Sbjct: 141 GIEALGFAGPDIDAEIILMGQRLWDELGLKGVRLEINSLGQAPERAEHRAALVIYFEKHQ 200

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
             +  D+    +      +D   P      +    L   + + +  +        +    
Sbjct: 201 DQLDEDSKRRLLSNPLRILDSKNPEMQALIEGAPKLLDYLGEESLKHFNAVQALLKANNI 260

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
               N R+  RG++  ++  F        +       G+   +     G  A     A+ 
Sbjct: 261 PCKINPRL-VRGLDYYNLTVFEWVTDELGAQGTIAGGGRYDPLIERMGGKAAPACGWAMG 319

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW----DDMG 385
                    +            I +         A   I  RL   G D       D   
Sbjct: 320 MERVLELMKVSGSLPETRAQCDIFVLHQGGETLTAAMIIAERLRSAGIDTILFCPPDGQS 379

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVI 435
               SQ   AD  G    VI+G   ++ ++ ++K  R TG ++ + L++V+
Sbjct: 380 ASFKSQMKKADSSGAAFAVIIGPDELAKNEAQLKDLRGTGEQKSVPLDDVL 430


>gi|325286006|ref|YP_004261796.1| glycyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
 gi|324321460|gb|ADY28925.1| glycyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
          Length = 513

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 88/271 (32%), Gaps = 23/271 (8%)

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           ++G            I      E +   +        ++             +   + + 
Sbjct: 244 QIGKAFRNEIVARQFIFRQREFEQM---EMQFFVRPGTQKEWYEAWKQNRIKWHLSLGIG 300

Query: 247 SIVEQW-----TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
               ++      A YA  +     K      E + + +R            K+S      
Sbjct: 301 EDNYRFHDHDKLAHYADAAADIEFKFPFGFKELEGIHSRTDFDLSSHE---KHSGKKLQY 357

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAV---------IESSHDGKGIIWPDSVAPFKISLI 352
           F     + +   +    IG  R+  AV         +E+      +  P  +AP K +++
Sbjct: 358 FDHEINESYVPYVVETSIGLDRMFLAVFSNSLIEEELENGSTRTVLKLPAVLAPTKAAIL 417

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +   D    D  ++I   L      V +D+    +G ++   D  G P  + V  + + 
Sbjct: 418 PLVKKD-GLPDVAKEIIEDLK-WDFKVIYDEKDA-VGRRYRRQDANGTPFCITVDHQTLE 474

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D  V I+HR T  ++ +++ ++ +  +   S
Sbjct: 475 DKTVTIRHRDTMEQKRVAIADLKSIINAEVS 505



 Score = 37.8 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 10/88 (11%)

Query: 19 EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMS 70
          ++ SH      G + Q S        +Y +   G +  +N+     +   +     + + 
Sbjct: 10 KVISHAKE--YGYVFQSSEIYDGLSAVYDYAQNGAELKNNIKQYWWKAMVQLHDNIVGID 67

Query: 71 VPTLQSADLWVESGRYDSYGKEMLRLAD 98
                  +W  SG  D++   ++   D
Sbjct: 68 SAIFMHPTVWKASGHVDAFNDPLIDNKD 95


>gi|304385081|ref|ZP_07367427.1| histidine--tRNA ligase [Pediococcus acidilactici DSM 20284]
 gi|304329275|gb|EFL96495.1| histidine--tRNA ligase [Pediococcus acidilactici DSM 20284]
          Length = 424

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 62/418 (14%), Positives = 118/418 (28%), Gaps = 13/418 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP   K    V    RE        E+  P  +  +++  S     D   KEM  
Sbjct: 8   GTADILPPYSKEWQFVEQKARETFALYNYEEIRTPMFEKFEVFSRSAGDTSDIVTKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRP----RFGV 149
             D+  + +   P     +   F  +         P   Y +   FR E       R   
Sbjct: 68  FDDKGGRHIALRPEGTAGVVRAFVENKLYGPEHQKPVKVYYMGPMFRYERPQSGRLREFH 127

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY--LRIFHRLGLKSIPMRAESGPIGGDLS 207
               E    D+   D+        +           + + LG ++   +     I     
Sbjct: 128 QIGVEAFGSDSPKIDVDTITMAMDFLSQLKVAGLKLVINTLGDQASRQQYRQALIDYLEP 187

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEK 266
           +   +  D+ E         +D    ++     D  S+ + + E     +A   +  +  
Sbjct: 188 YYDELSDDSKERLHKNPLRVLDSKDATDQEIVKDAPSILDYLTEDAQKHFAQVKEQLDAL 247

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-KGADGKDHYVQMGSYGIGAMRVV 325
               + ++  V         IF      S          A G+ + +     G     V 
Sbjct: 248 EIPYVVDSSMVRGLDYYNHTIFEIMVADSALGKGDVTICAGGRYNGLVQELGGPEVSGVG 307

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +              +          +    +  +    KI   L K+      D + 
Sbjct: 308 FGLGVERLLLLLNEQTQAALQASRLDFYVVGIGEAVQTETLKIVHELRKMNFVTEQDYLE 367

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +  +QF  AD L     + VG   +     ++K   TG  + +SL+E+ +   +   
Sbjct: 368 RKPKAQFKSADKLNARYVITVGEAEMQAHVFKLKEMATGTEKTLSLDELKD-IKNDLK 424


>gi|226224121|ref|YP_002758228.1| histidyl-tRNA synthetase [Listeria monocytogenes Clip81459]
 gi|254824421|ref|ZP_05229422.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|225876583|emb|CAS05292.1| histidyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|293593656|gb|EFG01417.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
          Length = 425

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/429 (13%), Positives = 112/429 (26%), Gaps = 44/429 (10%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            +    ++        E+  P  +  +L+        D   KE
Sbjct: 5   LPRGTRDILPEEVSKWHFLETEFKKVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKE 64

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +   F  H      + P   Y  +  FR E        R
Sbjct: 65  MYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGG---R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF- 210
            R+F      +                   +  F ++GL +I +   S            
Sbjct: 122 QRQFTQMGIEALGSDDPSIDVEV---ISLAMEFFRKIGLTNIKLVINSLGDKESRLKHRE 178

Query: 211 ----IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E    C       P+   +   D    L              S  + E 
Sbjct: 179 ALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFEN 238

Query: 267 LFDSLP------ENKRVSARGIEV--GHIFY-------FGTKYSLPMSATFKGADGKDHY 311
           +   L       E      RG++      F        FG K +L     + G   +   
Sbjct: 239 VKKYLNALEIPFEIDSTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGG 298

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                 G G       +     D K             +                 +  +
Sbjct: 299 PDTPGMGFGIGVERILLALEKADIKIPAKKPLEVYVITAQP-------EAELKAVTLVNK 351

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G     D +  +  +Q   A+       +I+G + +     ++K+  TG +E +S 
Sbjct: 352 LRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEAVSE 411

Query: 432 EEVINYASH 440
             ++    +
Sbjct: 412 TTILEKLIN 420


>gi|315282432|ref|ZP_07870848.1| histidyl-tRNA synthetase [Listeria marthii FSL S4-120]
 gi|313613921|gb|EFR87649.1| histidyl-tRNA synthetase [Listeria marthii FSL S4-120]
          Length = 425

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/422 (13%), Positives = 113/422 (26%), Gaps = 30/422 (7%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            +    ++        E+  P  +  +L+        D   KE
Sbjct: 5   LPRGTRDILPEEVSKWHFLETEFKKVCENYRYEEIRTPIFEHTELFERGVGDSTDIVSKE 64

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +   F  H      + P   Y  +  FR E        R
Sbjct: 65  MYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGG---R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF- 210
            R+F      +                   +  F ++GL +I +   S            
Sbjct: 122 QRQFTQMGIEALGSDNPSIDVEV---ISLAMEFFRKIGLTNIKLVINSLGDKESRLKHRE 178

Query: 211 ----IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E    C       P+   +   D    L              S  + E 
Sbjct: 179 ALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDHPLIQSAPSILDFLNEESVAYFEN 238

Query: 267 LFDSLP------ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           +   L       E      RG++      F   +      + T     G+ H +     G
Sbjct: 239 VKSYLDALGVPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVKEFGG 298

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                +   +               +   K   + +             +  +L + G  
Sbjct: 299 PDTPGIGFGIGVERILLALEKADIEIPAKKPLEVYVITAQPEAELKAVTLVNKLRQNGIS 358

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              D +  +  +Q   A+       +I+G + +     ++K+  TG +E +S   ++   
Sbjct: 359 AEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQSGNYQLKNMETGEQEAVSETTILEKL 418

Query: 439 SH 440
           ++
Sbjct: 419 TN 420


>gi|320041027|gb|EFW22960.1| glycyl-tRNA synthetase [Coccidioides posadasii str. Silveira]
          Length = 698

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 85/285 (29%), Gaps = 25/285 (8%)

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +              ++  +      E +  AD     +   K+    P+    T  + 
Sbjct: 395 RQHMANEMAHYATDCWDAELLSSYGWIECVGCADRSAYDLSVHKNKTGAPLVVRETRAEP 454

Query: 242 IISLNSIVEQWTAPYAA---TSDVHNEKLFDSLPENKR--------------VSARGIEV 284
           +      V+     +           E   D+L +  R              +   G+  
Sbjct: 455 LRIEEWQVDIDRKKFGPRFKKDGKTVEAAIDALSQELREKLALDLDKDGKITIDVEGVND 514

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           G +   G         T    + +++   +     G  R++  ++E  +  +       V
Sbjct: 515 GKV-EIGKDLVKIEKRTRV-ENIREYTPNVIEPSFGIGRILYCLMEHVYWSREGDEARGV 572

Query: 345 APFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             F       K      +  Q  +    K+  +L ++G     DD    IG ++A  D L
Sbjct: 573 LSFPPLAAPTKVLLVPLSSHQSFQPLVRKLTLKLRRMGVSNRVDDSSASIGKRYARNDEL 632

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  + V  + V D+   ++ R +  +   S EE+         
Sbjct: 633 GTPFGITVDFQSVKDNTFTLRDRDSMKQVRASEEEICKAVKSLVE 677



 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G++ + P G     N+  + R+        +E+    L   ++   SG  D +   M +
Sbjct: 80  SGLFDYGPPGCALQANIVDLWRKHFVLEEDMLEVDCTMLTPHEVLKTSGHVDKFADWMCK 139


>gi|257066851|ref|YP_003153107.1| histidyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
 gi|256798731|gb|ACV29386.1| histidyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
          Length = 428

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/425 (12%), Positives = 117/425 (27%), Gaps = 33/425 (7%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G+   LP  Q   D + +I+ E   +   + +  P ++  ++    G  ++  +     
Sbjct: 10  AGVMELLPKEQLVFDKIKSIVEETYKKYQFMPIDTPVIEKNEILFAKGGGETEKQIYEIA 69

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           +D  D ++ +  T              +    PF  Y I   +R E   +    R REF 
Sbjct: 70  SDSKDMSLRFDLTVPLARYVSEHFQDLN---FPFKRYHIGRVYRGERNQKG---RYREFY 123

Query: 157 MKDAYSFDLT----------PEGSKHSYN-----------KMFVSYLRIFHRLGLKSIPM 195
             D                 P      +                     F  LG++    
Sbjct: 124 QADIDIIGHNSLSIYNDALLPRVIFEIFEKLNFSDLTFKINNRKLLNGFFKSLGIEDTTD 183

Query: 196 RAESGPI-----GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
              +              E + + D  + +                +   D  +    +E
Sbjct: 184 VLRTIDKKDKIGIDKTFDELVRITDEKKARTIIEFIENKDSNKELLSKLFDFSTDELFLE 243

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                    + + +  + D   +      RG++      + T  +         + G+  
Sbjct: 244 GVDELNKVYTYMVDLGIPDRNIKIDLAITRGLDYYTSTVYETFINGYEKIGSVCSGGRYE 303

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK-AHDQVCRDACEKIY 369
            +           V  ++  +    +           K     +    D+   +   +I 
Sbjct: 304 DLASNFSKQKLPGVGMSIGLTRLFYQFQELGLIDEKIKSLTDILVIPMDESINEYGIEIL 363

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L   G  V       +   +   AD  G    +I+G + +S  +  IK   TG +   
Sbjct: 364 NKLRDSGESVDIYLESGKFKKKMNYADKCGIRKVIILGEEEMSKREYSIKDMETGEQVTK 423

Query: 430 SLEEV 434
             EE+
Sbjct: 424 KFEEL 428


>gi|238879014|gb|EEQ42652.1| glycyl-tRNA synthetase 1 [Candida albicans WO-1]
          Length = 652

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 6/142 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              ++    +     G  R++ ++ E     +       V      +   K      +++
Sbjct: 488 EHVREFVPNVIELSFGIGRILYSIFEHQFWCRPDDADRGVLSLPPIVAPTKVLLVPLSNN 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +   +K+   L K       DD    IG ++A  D LG P  + +    V D  V +
Sbjct: 548 SELQPIVKKVSQALRKEKIPFKVDDSSASIGKRYARNDELGTPFGITIDFDSVKDDSVTL 607

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R +  +   S++E++     
Sbjct: 608 RERDSTKQVRGSIQEIVEAIKD 629



 Score = 44.3 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G++ + P G    +NV    R+        +E+    L   D+   SG  D +   M +
Sbjct: 36 AGLFDFGPPGCAFQNNVIDAWRKHFILEEDMLEVEATMLTPHDVLKTSGHVDRFSDWMCK 95


>gi|317968542|ref|ZP_07969932.1| histidyl-tRNA synthetase [Synechococcus sp. CB0205]
          Length = 418

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 58/426 (13%), Positives = 104/426 (24%), Gaps = 34/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G+   LP        V    RE+  R    E+  P L+  +L+        D  GKEM  
Sbjct: 9   GMVDLLPAQTALWQRVENEAREQFRRACVQEIRTPVLEVTELFARGIGEATDVVGKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR D++    P     +      H       P   +     FR E        R R+F
Sbjct: 69  FLDRGDRSCTLRPEGTASVVRAAIQHGL-LSQGPQRLWYAGPMFRYERPQAG---RQRQF 124

Query: 156 LMKDAYS-FDLTPEGSKHSYNKMFV--------------SYLRIFHRLGLKSIPMRAESG 200
                             +    +               + L            + A   
Sbjct: 125 HQIGLECLGFADARSDVEAIAVAWDLLTSLGIQGLALELNTLGSSEDRVRYREQLVAYLQ 184

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                L  +     +    ++  SK+     +        D ++  S            +
Sbjct: 185 QHRDHLDPDSQDRLERNPLRILDSKNTDTQAVLVNAPTLADALAEESRDRFEQVRAGLDA 244

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 L   L       +           G + ++     + G   +       + G  
Sbjct: 245 LAIPYTLNPRLVRGLDYYSHTAFEITSTQLGAQATVCGGGRYDGLVEQLGGPVTPAIGWA 304

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                  ++    D                 + + +  Q    A   +   L   G  V 
Sbjct: 305 LGMERLVMLLGQQDAS-----------TPPDLYVVSRGQSAESAALLLTRSLRLAGMRVE 353

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYAS 439
            D  G     QF  AD  G     ++G   +    V +K  R      ++ L+++     
Sbjct: 354 RDPSGAAFAKQFKRADRSGSRWAAVLGDGELERGVVRLKPLREVAEELELPLKDLGA-IQ 412

Query: 440 HRFSNN 445
                 
Sbjct: 413 QVLRTR 418


>gi|325268781|ref|ZP_08135407.1| glycyl-tRNA synthetase beta subunit [Prevotella multiformis DSM
           16608]
 gi|324988886|gb|EGC20843.1| glycyl-tRNA synthetase beta subunit [Prevotella multiformis DSM
           16608]
          Length = 515

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 58/355 (16%), Positives = 114/355 (32%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  E+   A+  +K  +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 198 FSTEVGASAEATNKIYLRPETAQGIFVNFLNVQKTGRMKLPFGICQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           V R REF   +   F   P      +       L     LG              GD ++
Sbjct: 258 VFRMREFEQMEMQFFCQ-PGTEMKWFEYWKKHRLAWHEALG-------------MGDENY 303

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            F             +      P                        +     +H+   F
Sbjct: 304 RFHDHEKLAHYANAATDIEFHMPF----------------------GFKEVEGIHSRTDF 341

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D L ++++ S R I+     +   +         + + G D                   
Sbjct: 342 D-LSQHEKFSGRQIKY----FDPERNESYTPYDVETSIGVDRMFLSVM----CHSYTEEQ 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P+ +AP K +++ +   D    +   +I   L     +    +  + I
Sbjct: 393 LENGSSRIVLKLPEPLAPVKCAVLPLVNKD-GLPEKAREIVNSLK-FHFNTHM-EAKDSI 449

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  V V    ++D+ V +++R +  +E + +E++      R S
Sbjct: 450 GKRYRRQDAIGTPFCVTVDGDTLNDNTVTLRYRDSMKQERVPVEKLREIIEDRVS 504


>gi|304414049|ref|ZP_07395417.1| histidyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
 gi|304283263|gb|EFL91659.1| histidyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
          Length = 426

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/429 (13%), Positives = 124/429 (28%), Gaps = 39/429 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G++  LP       +V  +++   +R G  E+ +P ++ + L+  + G   D   KEM  
Sbjct: 12  GMHDSLPAETALWQHVEDVVKRVLSRYGYSEIRLPIVEQSQLFKRAIGEMTDVVEKEMYS 71

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN +++   P            H   Y      +Y     + +   + R R      
Sbjct: 72  FDDRNGESLTLRPEGTAGCIRAGIEHGLLYNQQQRLWYIGPMFRHERPQKGRYRQFHQLG 131

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D           +            + +G      R     +     H+
Sbjct: 132 AEVFGLFGPDIDAELIMLTARCWRELGIADHVELELNSIGSLQERARYRDALVAFLEIHK 191

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D      F     +D   P+      D   L   + E+    +A      ++   
Sbjct: 192 NKLDEDCQRRMYFNPLRVLDSKNPNIQQLLHDAPVLSEYLDEKSKQHFAGLCAFLDQTNI 251

Query: 269 DSLPENKRVSARGIEVGHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G + ++     +     +         G     
Sbjct: 252 KYKVNPRLVRGLDYYNHTVFEWITKNLGAQGTICAGGRYDELVEQLGGQATPGIGFSMGL 311

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV-------- 375
               ++             +    K+  + + A  +  + A  ++   L           
Sbjct: 312 ERLILLV-------QAINPNFTAAKMIDVYLIASGEGTQSAAMQLAEDLRNKIPSLKLMT 364

Query: 376 --GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G        G +I  QF+ A+  G    +++GS  +S  KV +K+   G +E +   +
Sbjct: 365 HHG--------GGKIARQFSRAEQCGARFALVLGSNELSTRKVTLKNLAIGEQETVQQAD 416

Query: 434 VINYASHRF 442
           +    +   
Sbjct: 417 IAVRLAKLL 425


>gi|323335160|gb|EGA76450.1| Grs2p [Saccharomyces cerevisiae Vin13]
          Length = 618

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              +++   +     G  R++  + +     +          F + +  IK      +++
Sbjct: 455 QHIREYIPNVIEPSFGLGRIIYCIFDHCFQVRVDSESRGFFSFPLQIAPIKVFVTTISNN 514

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  ++I   L K       DD    IG ++A  D LG P  + +  + + D  V +
Sbjct: 515 DGFPAILKRISQALRKREIYFKIDDSNTSIGKKYARNDELGTPFGITIDFETIKDQTVTL 574

Query: 419 KHRLTGIREDMSLEEVINYASHRFSN 444
           + R +  +   ++ +VI+       N
Sbjct: 575 RERNSMRQVRGTITDVISTIDKMLHN 600



 Score = 50.5 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G++   P G +  +N+  + RE        +++  P L   D+   SG  D +   M R
Sbjct: 33  SGLFDLGPPGCQLQNNLIRLWREHFIMEENMLQVDGPMLTPYDVLKTSGHVDKFTDWMCR 92

Query: 96  LADRNDKAMIYGPTHEE 112
              +  +        E+
Sbjct: 93  -NPKTGEYYRADHLIEQ 108


>gi|255025792|ref|ZP_05297778.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL J2-003]
          Length = 425

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/422 (13%), Positives = 113/422 (26%), Gaps = 30/422 (7%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            +    +         E+  P  +  +L+        D   KE
Sbjct: 5   LPRGTRDILPEEVSKWHFLETEFKNVXXXYQYEEIRTPVFEHTELFERGVGDSTDIVSKE 64

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +   F  H      + P   Y  +  FR E        R
Sbjct: 65  MYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGG---R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF- 210
            R+F      +                   +  F ++GL +I +   S            
Sbjct: 122 QRQFTQMGIEALGSDDSSIDVEV---ISLAMEFFRKIGLTNIKLVINSLGDKESRLKHRE 178

Query: 211 ----IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E    C       P+   +   D    L              S  + E 
Sbjct: 179 ALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFEN 238

Query: 267 LFDSLP------ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           + + L       E      RG++      F   +      + T     G+ H +     G
Sbjct: 239 VKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGG 298

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                +   +               +   K   + +             +  +L + G  
Sbjct: 299 PDTPGMGFGIGVERILLALEKADIEIPAKKPLDVYVITAQPEAELKAVTLVNKLRQNGIS 358

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              D +  +  +Q   A+       +I+G + +     ++K+  TG +E +S   ++   
Sbjct: 359 AEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEAVSETTILEKL 418

Query: 439 SH 440
           S+
Sbjct: 419 SN 420


>gi|195018532|ref|XP_001984799.1| GH14827 [Drosophila grimshawi]
 gi|193898281|gb|EDV97147.1| GH14827 [Drosophila grimshawi]
          Length = 679

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 84/304 (27%), Gaps = 20/304 (6%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
              Y   +             + + +              ++  +      E +  AD  
Sbjct: 352 LGYYMARIQQFLHAIGIKPECLRFRQHMGNEMAHYACDCWDAEILTSYGWVECVGCADRS 411

Query: 218 ETQVFCSKDFMDFPIPSENT----DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
              +          + +E         ++  +    +     Y   +    E L     +
Sbjct: 412 AYDLGQHTAATGVRLVAEKRLPAPKTVEVSEIVPNKQALGKTYKKDAKAITEALAKLSLD 471

Query: 274 NKRVSARGIEVGHIFYF--GTKYSLPMSATFKGADGKDHYVQMGSYG-------IGAMRV 324
           + +     +  G  +        +  + A   G       V +  +         G  R+
Sbjct: 472 DIKQVETQLASGGQYKLTLPDGATHELDAETIGVKHATKTVHVEEFIPSVVEPSFGIGRI 531

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCD 378
           + +++E S   +              +  IK      +++   +   +K+   L+K    
Sbjct: 532 MYSLLEHSFQCREGDEQRCYFTLPPVVAPIKCSILPLSNNAEFQPYTQKLSGALTKAELS 591

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINY 437
              DD    IG ++A  D +  P  + V    +     V ++ R T  +  + LE V+  
Sbjct: 592 HKVDDSSGSIGRRYARTDEIAIPYGITVDFDTLKAPHTVTLRDRNTMKQVRIDLEAVVGV 651

Query: 438 ASHR 441
               
Sbjct: 652 VKDL 655



 Score = 41.6 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+ A+ R+  +     +E+    L   
Sbjct: 73  LLKRRFFYDQSFAIYGGITGQYDFGPMGCSLKSNILALWRQFFSLEEQMLEVDCSILTPE 132

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  + +   M++     + 
Sbjct: 133 PVLKASGHVERFADLMVKDVKTGEC 157


>gi|187928153|ref|YP_001898640.1| histidyl-tRNA synthetase [Ralstonia pickettii 12J]
 gi|187725043|gb|ACD26208.1| histidyl-tRNA synthetase [Ralstonia pickettii 12J]
          Length = 450

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/420 (14%), Positives = 106/420 (25%), Gaps = 20/420 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      ++ +  +R      G  ++  P ++   L+V   G   D   KEM  
Sbjct: 27  GMNDLLPADAPLWEHFDNAVRSMLRAYGYQQIRTPIVEQTQLFVRGIGEVTDIVEKEMYT 86

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMR 151
             D  +   +                     + P   +     FR E   R         
Sbjct: 87  FTDALNGEQLTMRPEGTAAAVRAVIEHNLLYDGPKRLWYTGPMFRHERPQRGRYRQFHQV 146

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             E L       D                         L     RA            F 
Sbjct: 147 GVEALGFAGPDIDAEVILMCQRLWDDLGLVGLKLELNSLGQAEERAAHRADLIKYLEGFQ 206

Query: 212 VLADTGETQVFCSKDF--MDFPIPSENTDFDDI-ISLNSIVEQWTAPYAATSDVHNEKLF 268
            + D    +   +     +D   P+           L+ + ++  A +     +      
Sbjct: 207 DVLDEDGKRRLYTNPLRVLDTKNPALQDMAAGAPKLLDYLGDESRAHFEGVQKLLKANNI 266

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             +   + V         +F   T   L    T  G  G+   +     G  A     A+
Sbjct: 267 PFIINPRLVRGLDYYNLTVFE-WTTDKLGAQGTVAG-GGRYDPLIEQIGGKPAPACGWAM 324

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW----DDM 384
                                 +  +   D+    A      RL   G DV      +  
Sbjct: 325 GVERIIELLREEKLEPEAQGCDVYIVHQGDEAQVQALIA-AERLRDAGLDVILHASPEGR 383

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSLEEVINYASH 440
                SQF  AD  G    VI+G   V+    +IK          ++ +  +++++    
Sbjct: 384 NGSFKSQFKRADASGASYAVIIGDDEVTQGVAQIKPLRGDPTADAQQTVPSDQLVDRLID 443


>gi|313891371|ref|ZP_07824987.1| histidine--tRNA ligase [Dialister microaerophilus UPII 345-E]
 gi|313120146|gb|EFR43322.1| histidine--tRNA ligase [Dialister microaerophilus UPII 345-E]
          Length = 418

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/407 (14%), Positives = 115/407 (28%), Gaps = 19/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   IR+  +  G  E+  P  ++ +L++       D   KEM    DR  +++   
Sbjct: 18  WQYLEREIRQICDLYGFKEIRTPIFEATELFLRGIGDTTDVVTKEMYTFNDRGGRSITLR 77

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P +   +   +  +     N     + I   FR +        R REF      +     
Sbjct: 78  PENTAAVVRSYLENKMYADNTTHKLFYIGSMFRYDRPQAG---RYREFHQFGLEALGSDN 134

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLA---DTGETQVF 222
                         ++ F  LGLK + +   S        + HE ++        E    
Sbjct: 135 PYVDAEV---IDLAVQFFKDLGLKELKLHINSVGHIECRKVFHEKLIAFLEPKKDELCED 191

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--- 279
           C+      P+   +        +                   EKL   L E         
Sbjct: 192 CNTRLYKNPLRVLDCKNTTCKRIIDGAPNIVDCLCDDCSEKFEKLKTYLDELGIEYIVDP 251

Query: 280 ---RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F   Y    + +     G+   +     GI    +  A+        
Sbjct: 252 LLVRGLDYYTNTAFEIMYEPLGAQSTICGGGRYDGLVNEIGGIQVPGIGFAIGMERLVLA 311

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                        + + I    +        I   L +    V     G+ + S    AD
Sbjct: 312 LEKQNLFPEVKNENQVFIATVGENAIIKGVGIVKALRREQIHVGIAMQGKSLKSLLKQAD 371

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              +   +I+G   +   K  +K+  T  ++++  E ++        
Sbjct: 372 KEKYQFVLIIGEDELQKGKAILKNMETKEQKEIDFESIVEVVKKMVK 418


>gi|260753919|ref|YP_003226812.1| histidyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258553282|gb|ACV76228.1| histidyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 419

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 58/410 (14%), Positives = 127/410 (30%), Gaps = 27/410 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            ++V     E +   G     +P  +S  ++  S     D   KEM    DR+ + +   
Sbjct: 23  FNHVVNKFDEIRKLYGFKRAEIPVFESTAVFARSLGETTDVVSKEMYSFPDRSGEQLTLR 82

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +T  + +      + P         FR E   +    R R+F   DA       
Sbjct: 83  PEFTAGLTRAYLTSGWQQYS-PCKIATHGPVFRYERPQKG---RYRQFHQIDAEVIGAAE 138

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMR-----AESGPIGGDLSHEFIVLADT-----G 217
             +      +    L         ++ +      A        L   F    D+      
Sbjct: 139 PEADVELLSLADQLLESLGIKQHVTLHLNTLGDSASREAWRAALIEYFQGHFDSLSQESQ 198

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E         +D   P++    +    ++  + +  A +        +    +   + R+
Sbjct: 199 ERLTRNPLRILDSKDPNDKIIAEKAPIIDDYLTEEAASFFKAVTTGLDAAGVAWTRDPRL 258

Query: 278 SARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             RG++      F F T     + A      G  +     + G      +          
Sbjct: 259 -VRGLDYYRHTAFEFITDQ---LGAQGTVLAGGRYDGLSEALGGNLTPAIGWAAGIERLA 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             I  P   A     +I +    +  ++    I ++L   G        G  +  +   A
Sbjct: 315 MLIDEPKEDAMNVA-VIPLG---EEAKNPAISILSKLRHAGISADMSWRG-NMKRRMQKA 369

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +  G    VI+G + ++ ++  ++  +TG ++ ++L+++++       N 
Sbjct: 370 NGWGVRYAVILGEEELAQNEATVRSMVTGEQQAIALDQIVDRILSELRNK 419


>gi|123239921|emb|CAM27479.1| prolyl-tRNA synthetase (mitochondrial)(putative) [Mus musculus]
          Length = 163

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 3   RSKYFLPI-LQENP--------RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNV 53
            S+ F P  L+E+          D    S +LML+ G+I   S G Y  +P   +A++ +
Sbjct: 69  LSRMFQPQNLREDQVLSLEGRASDLTCKSQRLMLQVGLILPASPGCYHLMPYTVRAVEKL 128

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD 87
             +I +E    G  ++++P+L  A+LW  + R+D
Sbjct: 129 VRVIDQEMQAIGGQKINMPSLSPAELWRATSRWD 162


>gi|281492566|ref|YP_003354546.1| histidyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|281376230|gb|ADA65721.1| Histidyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
          Length = 430

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/416 (14%), Positives = 123/416 (29%), Gaps = 29/416 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DSYGKEMLR 95
           G    LP        +  I R   N     E+  P  +S +L+   +G   D   KEM  
Sbjct: 8   GTADLLPAETAKWQYIEEIARGVFNDYNFKEIRTPMFESYELFSRATGETSDIVTKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P         +  +      +  P   +     FR E      + +  
Sbjct: 68  FEDKGGRHIALRPEGTASAVRAYIENKLYAPEVVKPVKLWYDAPMFRYERPQSGRLRQFH 127

Query: 154 EFLMK---------DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           +F ++         D     +     +          L     +  +    +A    I  
Sbjct: 128 QFGVECLGVKNPAVDVEIIAMADTLFRQLGITGLKLALNTLGDMESRMAYRQA---LIDY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               E  +  D+           +D     +     +  ++   + + +  Y        
Sbjct: 185 LTPFENQLSEDSRRRLNENPLRVLDSKEAEDIAIVKNAPAILDYLNEASKAYFEEVKALL 244

Query: 265 EKLF-DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYG 318
           E L  +   +   V         IF F     G   ++     + G           ++G
Sbjct: 245 ESLHIEYTIDPNMVRGLDYYNDTIFEFIVDFDGKDLTVCGGGRYDGLVEYFDGPATPAFG 304

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G       +I    +        +  P +   + I    +       K+   L +    
Sbjct: 305 FGLGIERLLMIAQKQEI-------NFIPEETLDVYIAVMGEKANLEATKLAESLREQAFK 357

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           V  D    ++G+QF  A+ LG  L + +G   +   ++++KH  T  + + +L+ V
Sbjct: 358 VERDFSNRKLGAQFKTAEKLGAELIITLGEDEIRTGQIKVKHNQTRKQVETTLKAV 413


>gi|145631822|ref|ZP_01787581.1| histidyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|144982541|gb|EDJ90095.1| histidyl-tRNA synthetase [Haemophilus influenzae R3021]
          Length = 423

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 67/412 (16%), Positives = 128/412 (31%), Gaps = 27/412 (6%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y     FR E   +    +  +  ++     +  
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWYI-GPMFRHERPQKGRYRQFHQVGVEVFGIANPE 138

Query: 167 PEGSKHSYNKMFVSYLRIFHR-------LGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +             L I          +G         S  +G   +H+ ++  +  E 
Sbjct: 139 IDAELIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLENHQDLMSDEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVS 278
            V      +D   P      D    L   ++  + A +     + +          K V 
Sbjct: 199 LVRNPLRILDTKNPELQKVLDHAPKLLDYLDDESRAHFEQLCSLLDAVGIQYEINPKLVR 258

Query: 279 ARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   +F       G + ++     + G       H      + +G  R+V  V E 
Sbjct: 259 GLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAMGLERLVLLVQEV 318

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           + +       D    ++     +        +  EK+ + L     +            Q
Sbjct: 319 NPNVPAKSAVDIYVVYQGEGATL-----AAFELAEKVRSELP--HLNTMLHCSSGNFKKQ 371

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
           F  AD  G  L +++G   V + +V +KH   G  ++ + L  +I+Y   +F
Sbjct: 372 FKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVNIIDYLQTQF 423


>gi|319411507|emb|CBQ73551.1| probable glycine--tRNA ligase GRS1 [Sporisorium reilianum]
          Length = 681

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/415 (12%), Positives = 123/415 (29%), Gaps = 78/415 (18%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T +    +  R    +   +PF   QI   FR+E+ PR G++R REF M +   F
Sbjct: 243 YLRPETAQGHFVNFQRLLEFNNGRVPFASAQIGKSFRNEISPRAGLLRVREFTMAEIEHF 302

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--------------------- 202
               + +   ++++    + +  +   +S      +  I                     
Sbjct: 303 VDPEDKNHERFDEVKDIKVPLLAKDIQESGKTDITTITIGDAVSAGTIDNQTLGYFIGRI 362

Query: 203 -----------------GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
                                +      +D  + ++  S  +++    ++ + +D  +  
Sbjct: 363 YLFLVKIGIDATRLRFRQHMSNEMAHYASDCWDAEIHTSYGWIECVGCADRSAYDLTVHS 422

Query: 246 NSIVEQW--------------------TAPYAATSDVHNEKLFDSLPENKRVSARGIE-- 283
               +                                  + + +++ E  +     +E  
Sbjct: 423 KKTKKDLVVQKAHKEPKVYDALVPTIVKKNIGPKFKKDAKIVEEAILEMDQKKLAELESK 482

Query: 284 -----------VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                       G  F   T        T +    ++    +     G  R+  +++E S
Sbjct: 483 LKNGSAPLTVCTGQTFELTTDVVTVEMKTIR-ETVREFTPNVIEPSFGIGRIFYSLLEHS 541

Query: 333 HDGKGIIWPDSVAPFKISLINIKA------HDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
              +       V      +  IKA       ++      +++  +L   G     DD   
Sbjct: 542 FWTRAEDQDRGVLSLPPLVAPIKALIVPISSNEKLAPLVKQVSRQLRSAGVASRVDDSNA 601

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            IG ++A  D LG P    +    +S   + ++ R +  +    +++VI+     
Sbjct: 602 SIGRRYARNDELGTPFACTLDFASLSKGTMTLRERDSTAQRIGPIDQVIDVIRQL 656



 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 11/70 (15%)

Query: 38  GIYSWLPLGQKALDNVNA------IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           G+Y + P G     N+        II EE      +E+    +  AD+   SG  D +  
Sbjct: 58  GLYDYGPTGAALQANIINQWRNHFIIEEEM-----LELDTTIMTLADVLKTSGHVDKFAD 112

Query: 92  EMLRLADRND 101
            M +     +
Sbjct: 113 WMCKDTKNGE 122


>gi|46907748|ref|YP_014137.1| histidyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47094550|ref|ZP_00232211.1| histidyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|254852144|ref|ZP_05241492.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|254931455|ref|ZP_05264814.1| histidyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|300764813|ref|ZP_07074803.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|67461798|sp|Q71ZF0|SYH_LISMF RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46881017|gb|AAT04314.1| histidyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47017076|gb|EAL07948.1| histidyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|258605447|gb|EEW18055.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|293583007|gb|EFF95039.1| histidyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|300514489|gb|EFK41546.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
          Length = 425

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/429 (13%), Positives = 112/429 (26%), Gaps = 44/429 (10%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            +    ++        E+  P  +  +L+        D   KE
Sbjct: 5   LPRGTRDILPEEVSKWHFLETEFKKVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKE 64

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +   F  H      + P   Y  +  FR E        R
Sbjct: 65  MYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGG---R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF- 210
            R+F      +                   +  F ++GL +I +   S            
Sbjct: 122 QRQFTQMGIEALGSDDPSIDVEV---ISLAMEFFRKIGLINIKLVINSLGDKESRLKHRE 178

Query: 211 ----IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E    C       P+   +   D    L              S  + E 
Sbjct: 179 ALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFEN 238

Query: 267 LFDSLP------ENKRVSARGIEV--GHIFY-------FGTKYSLPMSATFKGADGKDHY 311
           +   L       E      RG++      F        FG K +L     + G   +   
Sbjct: 239 VKKYLNALEIPFEIDSTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGG 298

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                 G G       +     D K             +                 +  +
Sbjct: 299 PDTPGMGFGIGVERILLALEKADIKIPAKKPLEVYVITAQP-------EAELKAVTLVNK 351

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G     D +  +  +Q   A+       +I+G + +     ++K+  TG +E +S 
Sbjct: 352 LRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEAVSE 411

Query: 432 EEVINYASH 440
             ++    +
Sbjct: 412 TTILEKLIN 420


>gi|301121300|ref|XP_002908377.1| glycyl-tRNA synthetase [Phytophthora infestans T30-4]
 gi|262103408|gb|EEY61460.1| glycyl-tRNA synthetase [Phytophthora infestans T30-4]
          Length = 681

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 77/286 (26%), Gaps = 24/286 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI-------P 233
           + +  +           +          E    AD     +          +        
Sbjct: 378 FRQHLNTEMAHYATDCWDLEIKLSSGWVECAGHADRSCYDLSVHAKKSKVEMVGTHKFDK 437

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN---------KRVSARGIEV 284
            E     +I      + +      AT     E L D +P           K  +  G   
Sbjct: 438 PEKRQIVEIKPNKGKMGRTFKADVATILEALEALKDDVPRAQAFEDELTSKGEATLGPLC 497

Query: 285 -GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
            G  F              K    +     +     G  R++ AV E +   +       
Sbjct: 498 DGKQFTLQRDMVAIKVVE-KMVSEEKFVPSVIEPSFGIGRILTAVFEHNFYTREGDEKRG 556

Query: 344 VAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           V  F   +  IK      +++        ++     + G +   D     IG ++A AD 
Sbjct: 557 VMSFSPLIAPIKVSVLPLSNNPAFEPFATELENVFVEEGLECKVDTSSVAIGRKYARADE 616

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           LG P  V +    V D  V ++ R +  +  + ++ +    +    
Sbjct: 617 LGIPFNVTIDFDTVKDRVVTLRERDSTAQVRIPMDAIGAEVNKLVK 662



 Score = 45.1 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 35/134 (26%), Gaps = 8/134 (5%)

Query: 15  PRDAEIASHKLMLR------TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG-AI 67
             D +     L+LR      +  I+    G Y + P       N+    R         +
Sbjct: 66  KSDKKALD-DLLLRKMFVVPSFEIYGGVGGFYDFGPPACALKSNLLQFWRRHFVFADKLL 124

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+    L    +   SG  D +   M++     +         + V   + +    S   
Sbjct: 125 EVECTNLMPEVVLKTSGHVDRFTDLMVKCTKSGECYRADKLLEDHVENYLDKHSDLSQEE 184

Query: 128 LPFTFYQIQLKFRD 141
                    +    
Sbjct: 185 REKHEMHATMAESY 198


>gi|86134575|ref|ZP_01053157.1| glycyl-tRNA synthetase [Polaribacter sp. MED152]
 gi|85821438|gb|EAQ42585.1| glycyl-tRNA synthetase [Polaribacter sp. MED152]
          Length = 515

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/501 (12%), Positives = 129/501 (25%), Gaps = 81/501 (16%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMS 70
           ++ SH      G + Q S        +Y +   G +   N+     +   +     + + 
Sbjct: 10  KVLSHAKE--YGYVFQSSEIYDGLSAVYDYAQNGVELKKNIRDYWWKAMVQMHENIVGID 67

Query: 71  VPTLQSADLWVESGRYDSYGK------------------EMLRLADRNDKAMIYGPTHEE 112
              L     W  SG  D++                    E  R               + 
Sbjct: 68  AAILMHPTTWKASGHVDAFNDPLIDNKDSKKRYRADVLVEDFREKINQKIEKDIAKAKKR 127

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
                     ++         +   +   EL           F           P     
Sbjct: 128 FGDAFNEEEFRATNQNVIRRQKQIDEISAELTRVQEESDLVGFKQLIVDLGIGCPASGSK 187

Query: 173 SYNKMFVSYLRIFHRLGLKSIPM------------------------------------R 196
           ++ ++    L    ++G  +                                       +
Sbjct: 188 NWTEVKQFNLMFGTQIGASAENSTQVYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQTGK 247

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
           A    I        +   +  E Q F           S             + E+    +
Sbjct: 248 AFRNEIVARQFIFRMREFEQMEMQFFVKPGTQKEWYNSWKETRLKWHLSLGMGEENYRFH 307

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHI---FYFG--TKYSLPMSATFKGADGKDHY 311
                 H       +  N     + +E  H    F      ++S      F   + K + 
Sbjct: 308 DHDKLAHYADAAADIEFNFPFGFKELEGIHSRTDFDLKAHEEFSGKKLQYFDHEENKSYV 367

Query: 312 VQMGSYGIGAMRVVAAV---------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
             +    IG  R+  AV         +E+      +  P  +APFK ++  +   D    
Sbjct: 368 PYVVETSIGLDRMFLAVFSKSLQEEELENGTTRTVLKLPAVLAPFKAAVFPLVKKD-GLP 426

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +  ++I   L     +VF+D+    +G ++   D  G P  + V    + D  V I+HR 
Sbjct: 427 EVAKQIVEDLK-WDFNVFYDEKDA-VGKRYRRQDAAGTPFCITVDHDSLEDDSVTIRHRD 484

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +  ++ + + ++         
Sbjct: 485 SMDQKRVKISDLRAIIKAEVD 505


>gi|311739543|ref|ZP_07713378.1| histidine--tRNA ligase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305359|gb|EFQ81427.1| histidine--tRNA ligase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 429

 Score = 88.3 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/422 (13%), Positives = 119/422 (28%), Gaps = 26/422 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G+  + P    A   V   + E+ + +G   + +P  +   L+        D   KEM  
Sbjct: 15  GVPDYFPPQSAAFYKVRQTMVEQAHLSGFQHIELPIFEDTALFARGVGESTDVVSKEMYT 74

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR D+++   P     +      H      LP         FR E        R R+ 
Sbjct: 75  FADRGDRSVTLRPEGTAGVMRSVIEHNLDRGQLPVKLNYFGPFFRYERPQAG---RYRQL 131

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIV 212
                 +  +           +     R     G +            P   +   EF+ 
Sbjct: 132 QQVGVEAIGVDDPALDAEVIALADRSFRALGLSGFRLELTSLGDRNCRPAYREKLQEFLF 191

Query: 213 LADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             D  E      ++   +   D     +    D  + L+ + ++    +   + + ++  
Sbjct: 192 KLDLDEETRHRAEINPLRVLDDKRPEVQEQLADAPLMLDHLNDECRDHFETVTGMLDDMG 251

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                  + V          F F     +      +   G           +G   +   
Sbjct: 252 VAYEINPRMVRGLDYYTKTCFEF-----VHDGLGAQSGIGGGGRYDGLMAQLGGQDLSGI 306

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK----IYARLSKVGCDVF--W 381
                 D   +               +         A ++    +   L K G      +
Sbjct: 307 GYGLGVDRALLALEAEGITLDGVESRVDVFGVALGAAAKRTMTTLINDLRKAGISADMSF 366

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            D G + G+    AD  G    +++G + + +  V +K      + D+ + ++++  +  
Sbjct: 367 GDRGLK-GAM-KGADRAGARFALVLGEQELENGTVALKDLAAHEQHDVKVSDLVSVLARE 424

Query: 442 FS 443
            +
Sbjct: 425 IN 426


>gi|224053571|ref|XP_002297878.1| predicted protein [Populus trichocarpa]
 gi|222845136|gb|EEE82683.1| predicted protein [Populus trichocarpa]
          Length = 690

 Score = 88.3 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 87/312 (27%), Gaps = 20/312 (6%)

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                G    R +L       D      +         Y        ++S     E   I
Sbjct: 360 NNETLGYFIGRVYLFLTHLGIDKDRLRFRQHLANEMAHYAADCWDAEIESSYGWIECVGI 419

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               +++     D     +   + F +     +         L    +          + 
Sbjct: 420 ADRSAYDLRAHTDKSGVPLVAHEKFSEPKEVEKLVIAPVKKELGLSFKGNQKKVVEALEA 479

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-----ADGKDHYVQMGSY 317
            NEK   +L     +  +G    ++   G   ++  S             +     +   
Sbjct: 480 MNEKE--ALDMKSSLETKGEVEFYVCTLGENVTIKKSMVSISKEKKKEHQRTFTPSVIEP 537

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS---LINIK------AHDQVCRDACEKI 368
             G  R++  + E S   +     D           +  IK        +Q   D  + I
Sbjct: 538 SFGIGRIIYCLYEHSFYMRSSKAGDEQQNVFRFPPLVAPIKCTVFPLVQNQQYEDVAKII 597

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L+  G     D  G  IG ++A  D LG P  + V     S S V I+ R +  +  
Sbjct: 598 SKSLTAAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERDSKDQIR 653

Query: 429 MSLEEVINYASH 440
           +++EE  +    
Sbjct: 654 VNVEEAASVVKS 665



 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAI 67
           +E  R A + + +  L    +  I++   G+Y + P G     NV A  R+        +
Sbjct: 74  KEAFRQAVVNTLERRLFFIPSFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENML 133

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
           E+  P +    +   SG  D +   M++  ++           ++  
Sbjct: 134 EVDCPCVTPEVVLKASGHVDKFTDLMVKD-EKTGTCYRADHLLKDFC 179


>gi|150026458|ref|YP_001297284.1| glycyl-tRNA synthetase [Flavobacterium psychrophilum JIP02/86]
 gi|149772999|emb|CAL44483.1| Glycine--tRNA ligase [Flavobacterium psychrophilum JIP02/86]
          Length = 513

 Score = 88.3 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 81/253 (32%), Gaps = 16/253 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       GE   +             +             E+  A YA  
Sbjct: 260 FRMREFEQMEMQFFVKPGEEMKYYEYWKTTRLNWHLSLGLGKENYRFHDHEKL-AHYANA 318

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +            E + + +R            K+S      F      ++   +    +
Sbjct: 319 AADIEFNFPFGFKELEGIHSRTDFDLKAHE---KFSGKKLQYFDTETNANYTPYVVETSV 375

Query: 320 GAMRVVAA---------VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R+  A          +E       +  P  +AP K +++ +   D    +   KI  
Sbjct: 376 GLDRMFLAVFSNSLKEETLEDGSTRTVLQLPSVLAPTKAAVLPLVKKD-GLPEVARKIIE 434

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +L     +V +D+    +G ++   D LG P  + V  + + D  V I+HR T  ++ + 
Sbjct: 435 KLK-WDFNVAYDEKDA-VGRRYRRQDALGTPFCITVDHQTLEDETVTIRHRDTMKQDRVK 492

Query: 431 LEEVINYASHRFS 443
           + E+ +  ++  S
Sbjct: 493 ISELRDIINNEVS 505


>gi|323344340|ref|ZP_08084565.1| glycyl-tRNA synthetase beta subunit [Prevotella oralis ATCC 33269]
 gi|323094467|gb|EFZ37043.1| glycyl-tRNA synthetase beta subunit [Prevotella oralis ATCC 33269]
          Length = 513

 Score = 88.3 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 115/364 (31%), Gaps = 66/364 (18%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   ++  ++  +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 198 FSTEMGSTSESTNRIYLRPETAQGIFVNYLNVQKTGRMKLPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      +     + ++    LG  +   R            
Sbjct: 258 IFRMREFEQMEMQFFVK-PGTEMKWFETWKETRMKWHQALGFGADNYRFHDH-------- 308

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                                                     +  A YA  +     K+ 
Sbjct: 309 ------------------------------------------EKLAHYANAATDIEFKMP 326

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               E + + +R            K+S      F     + +        IG  R+  +V
Sbjct: 327 FGFKEVEGIHSRTDFDLSQHE---KFSGRQIKYFDPETNESYTPYDIETSIGVDRMFLSV 383

Query: 329 IESSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           +  +   + +           P+++AP K +++ +   D    +   +I   L     + 
Sbjct: 384 MCHAFTEETLDNGESRVVLKLPEALAPVKCAVLPLVKKD-GLPEKAREIVDELK-FHFNT 441

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +++    IG ++   D +G P  V V    ++D+KV ++ R +  +E + + ++     
Sbjct: 442 HYEEKD-SIGKRYRRQDAIGTPFCVTVDHDTLNDNKVTLRFRDSMEQERVDISQLRGIIE 500

Query: 440 HRFS 443
            R S
Sbjct: 501 DRVS 504


>gi|332311962|gb|EGJ25057.1| Histidyl-tRNA synthetase [Listeria monocytogenes str. Scott A]
          Length = 427

 Score = 88.3 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 60/429 (13%), Positives = 112/429 (26%), Gaps = 44/429 (10%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            +    ++        E+  P  +  +L+        D   KE
Sbjct: 7   LPRGTRDILPEEVSKWHFLETEFKKVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKE 66

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +   F  H      + P   Y  +  FR E        R
Sbjct: 67  MYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGG---R 123

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF- 210
            R+F      +                   +  F ++GL +I +   S            
Sbjct: 124 QRQFTQMGIEALGSDDPSIDVEV---ISLAMEFFRKIGLINIKLVINSLGDKESRLKHRE 180

Query: 211 ----IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E    C       P+   +   D    L              S  + E 
Sbjct: 181 ALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFEN 240

Query: 267 LFDSLP------ENKRVSARGIEV--GHIFY-------FGTKYSLPMSATFKGADGKDHY 311
           +   L       E      RG++      F        FG K +L     + G   +   
Sbjct: 241 VKKYLNALEIPFEIDSTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGG 300

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                 G G       +     D K             +                 +  +
Sbjct: 301 PDTPGMGFGIGVERILLALEKADIKIPAKKPLEVYVITAQP-------EAELKAVTLVNK 353

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G     D +  +  +Q   A+       +I+G + +     ++K+  TG +E +S 
Sbjct: 354 LRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEAVSE 413

Query: 432 EEVINYASH 440
             ++    +
Sbjct: 414 TTILEKLIN 422


>gi|24380435|ref|NP_722390.1| histidyl-tRNA synthetase [Streptococcus mutans UA159]
 gi|32130103|sp|Q8CWW2|SYH_STRMU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|24378462|gb|AAN59696.1|AE015032_1 histidyl-tRNA synthetase (histidine--tRNA ligase) [Streptococcus
           mutans UA159]
          Length = 429

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 63/425 (14%), Positives = 121/425 (28%), Gaps = 28/425 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V  + R+   +    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 13  LPQETVKWQYVENVARKTFKKYHYGEIRTPMFERYEVISRSVGDTTDIVTKEMYDFHDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   + I   FR E        R REF   
Sbjct: 73  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKVFYIGSMFRYERPQAG---RLREFHQL 129

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD--- 215
               F                   ++F+ LG+K + +   S             L D   
Sbjct: 130 GVECFGSNNPAIDAE---TIAMAYQLFNELGIKDVTLHLNSLGNKESRKAYRQALIDYLI 186

Query: 216 --TGETQVFCSKDFMDFPIPSENTDFDDIIS--------LNSIVEQWTAPYAATSDVHNE 265
               +      +   + P+   ++   +           L+ + +   A +    D+   
Sbjct: 187 PMKDKLSKDSQRRLEENPLRVLDSKEKEDKEAVENAPSILDYLDDDSQAHFQGVRDMLEV 246

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                + +   V         IF F T+           A G+   +     G       
Sbjct: 247 LDIPYVIDTNMVRGLDYYNHTIFEFITQVDKSELT--LCAGGRYDSLVEYFGGPATAGFG 304

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +              ++       + I            ++   + K G     D + 
Sbjct: 305 FGLGLERLLLVIDKQKINLPVDNSLDVYIAVLGAAANSTALELIQAIRKQGFSAERDYLS 364

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---INYASHRF 442
            +I +QF  AD+    L + +G   V   +V +K+  T     +S EE+         + 
Sbjct: 365 RKIKAQFKSADVFKTKLIMTLGESEVETGQVAVKNNFTRQEIAVSFEEIKTDFASVFKQL 424

Query: 443 SNNRP 447
            ++RP
Sbjct: 425 GSDRP 429


>gi|289581194|ref|YP_003479660.1| histidyl-tRNA synthetase [Natrialba magadii ATCC 43099]
 gi|289530747|gb|ADD05098.1| histidyl-tRNA synthetase [Natrialba magadii ATCC 43099]
          Length = 432

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 68/425 (16%), Positives = 128/425 (30%), Gaps = 40/425 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P    A       + +     G  E+  P L+ A++W  +SG  D    E+   
Sbjct: 7   GFRDFYPGEMAARRATIDTLEDTARGYGFREIGTPALERAEMWTDKSG--DDIVDELYAF 64

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +  +  +  +   + P  ++  +  +R E   +    R REF 
Sbjct: 65  EDQGGRHVTLTPELTPTVARMVVAKQQ-ELSKPIKWFSTRPFWRYEQVQQG---RQREFY 120

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +   F  +   +           +      G      R     I G +   +    DT
Sbjct: 121 QTNVDIFGSSEPEADAEILAWAADAMTNLGLTGEHFEF-RISHRDILGGVLESYDADVDT 179

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW----TAPYAATSDVHNEKLFDSLP 272
            +      K      +   +      ++ +  VE              +  N +  D+  
Sbjct: 180 EDAIRAVDKSDKLSTVEYHDLLIGAGLTADQAVEFDDLIAGGDLEDVREFANTERVDAAV 239

Query: 273 EN-------------------KRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHY 311
           +N                      +ARG++   G +F           + F G       
Sbjct: 240 DNLQNVLAAADDFGAREFCTISLETARGLDYYTGVVFECFDSAGEVSRSIFGGGRYDTLI 299

Query: 312 VQMGSYGIGAMRVV--AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
              G     A+ V    A +       G+   + V      L       +       +I 
Sbjct: 300 ESFGGQPTPAVGVAPGHATLSLLCQRAGVWPAEEVTTDYYVLQIGDTRTE-----AAQIT 354

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L + G  V  D  G   GSQ   AD +     VI G + +++ +V IK   +G +  +
Sbjct: 355 RELRERGHVVETDVAGRSFGSQLNYADSINAETVVIAGEQDLANDEVTIKDMASGDQLQV 414

Query: 430 SLEEV 434
            +E  
Sbjct: 415 PVESF 419


>gi|300113469|ref|YP_003760044.1| histidyl-tRNA synthetase [Nitrosococcus watsonii C-113]
 gi|299539406|gb|ADJ27723.1| histidyl-tRNA synthetase [Nitrosococcus watsonii C-113]
          Length = 423

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/422 (13%), Positives = 117/422 (27%), Gaps = 22/422 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        V  ++       G  E+ +P L+S +L+  S G   D   KEM  
Sbjct: 9   GMNDLLPDQTPHWQRVEDVLSRVLASYGYQEIRLPLLESTELFRRSIGEVTDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMR 151
             DRN  ++   P            H           +     FR E       R     
Sbjct: 69  FIDRNGDSLTLRPEGTAGCVRSILQHGL-LTQGSLRLWYYGPMFRHERPQKGRYRQFYQI 127

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKM--FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
             E L  +    D         + +           + LG  +  +      +    +HE
Sbjct: 128 GVEVLGTEGPDVDAELILMTARFWRQLGLQDLHLQINSLGSPAARIAYRERLVDFFTAHE 187

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE---- 265
            ++  D+           +D   P+ +        L   ++  +  +        +    
Sbjct: 188 DVLDEDSRRRLHSNPLRILDSKNPALHEIIARAPRLLDYLDDDSCAHFEALQHTLDSAGI 247

Query: 266 --KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             K+   L        R +        G++ ++     + G   +     + + G     
Sbjct: 248 AYKINPRLVRGLDYYTRTVFEWVSDQLGSQGTVCAGGRYDGLVEQLGGQSIPAVGFALGL 307

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
                +           P  +    +        +Q      E++   +      +  + 
Sbjct: 308 ERLVALLGEQGRLQAPLPADLYLVAVGSQA----EQESLLFAEQLREAIPAA--RLQVNH 361

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASHRF 442
            G    SQ   AD  G    +I+G   +    V +K       +E +  +++  Y   + 
Sbjct: 362 GGGSFKSQLKRADRSGARWALILGEDEILQGTVSVKDLRQRKPQELVPQDKLSAYIKQQL 421

Query: 443 SN 444
            +
Sbjct: 422 QS 423


>gi|296270027|ref|YP_003652659.1| histidyl-tRNA synthetase [Thermobispora bispora DSM 43833]
 gi|296092814|gb|ADG88766.1| histidyl-tRNA synthetase [Thermobispora bispora DSM 43833]
          Length = 418

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 71/434 (16%), Positives = 122/434 (28%), Gaps = 37/434 (8%)

Query: 31  MIHQHSKGIYSWLPLG----QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           MI Q  KG + W+P          D + A +R    R G   +  P  +   L+      
Sbjct: 1   MIFQAPKGTFDWMPPRSESVLAIRDALAAPVR----RAGYSYIETPIFEDTRLFQRGVGE 56

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D   KEM     +  +++   P     +      H      LP   +     FR E  
Sbjct: 57  STDIVTKEMYTFQSKGGQSLTLRPEGTASVMRAVLEHGLYGGPLPIKLWYSGSYFRYERP 116

Query: 145 PRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GP 201
                 R R F    A +     P             Y  +  R     +         P
Sbjct: 117 QAG---RYRHFSQVGAEALGAQDPAIDAELIVLALDGYASLGLRRVRLLLNSLGCRECRP 173

Query: 202 IGGDLSHEFIVLADTGE-----TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
                  EF+   D  E      ++   +   D          D  + ++ +     A +
Sbjct: 174 GYRAALQEFLRGLDLDEATRHRVEINPLRVLDDKREEVRAQLTDAPLVIDHLCGACKAFH 233

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKD 309
                + +      + E K V          F       G + S+     + G       
Sbjct: 234 EEVRGLLSAAGVSYIDEPKLVRGLDYYTRTTFEFVHDGLGAQSSVGGGGRYDGLSEMIGG 293

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
             +    + +G  R V A+          +  +      +  + +       R     + 
Sbjct: 294 PPLPGVGWALGVDRTVLAM------EAEGLLSERPTRVDVFAVPLG---DEARRRIFPLV 344

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L + G  V     G  +      AD  G    VI+G + +     +IK   TG +  +
Sbjct: 345 TGLRRAGLAVDMAFGGRSVKGAMKAADRSGARYAVILGERDLEAGAAQIKDMTTGEQTAV 404

Query: 430 SLEEVINYASHRFS 443
            L EV++    R S
Sbjct: 405 PLAEVVDVLKGRLS 418


>gi|307690441|ref|ZP_07632887.1| histidyl-tRNA synthetase [Clostridium cellulovorans 743B]
          Length = 396

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/385 (14%), Positives = 114/385 (29%), Gaps = 19/385 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   +R+     GA E+  P  +  +L++       D   KEM    D+  +++   
Sbjct: 20  WQYLEEKMRKTAAEYGAREIRTPAFEHTELFIRGVGETTDVVQKEMYTFEDKGGRSVTLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F          P   Y     FR E   +  +    +F ++   S D + 
Sbjct: 80  PEGTASAVRAFIEGSLFNDAQPTKMYYFTPVFRYENVQKGRLREHHQFGVEVFGSQDASI 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +    S     ++ L + +     +         I      EF+      +    C   F
Sbjct: 140 DSELISLALRVLTELGVNNLELNINSIGCPNCRAIYNAALKEFLKKN-YDDLCPTCKSRF 198

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSARG 281
              P+   +   +    +N+   +           H E L   L       +      RG
Sbjct: 199 EKNPMRILDCKEEKCKIINASAPEILDYLDDECKSHFEALKAYLTAMDIKYKINPRIVRG 258

Query: 282 IEV--GHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ++     +F      +++     +     +     M + G G       +          
Sbjct: 259 LDYYTKTVFEILNNNFTVCGGGRYDNLINQVGGPSMPAVGFGMGMERLIL-------TLE 311

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +       + I A     +    K+   L K+G     D M + + +Q   A+ +
Sbjct: 312 ESNIEIPRTPYIDLYIGAMGDSSKIESLKLAYNLRKLGLKCEIDHMNKSVKAQMKYANKI 371

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLT 423
                +I+G   ++  KV++K    
Sbjct: 372 DASYTLILGDDELATKKVKLKRMSD 396


>gi|319945852|ref|ZP_08020102.1| histidine--tRNA ligase [Streptococcus australis ATCC 700641]
 gi|319747917|gb|EFW00161.1| histidine--tRNA ligase [Streptococcus australis ATCC 700641]
          Length = 424

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 59/405 (14%), Positives = 116/405 (28%), Gaps = 13/405 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFARETFKKYNYAEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAY 161
           P     +   +  +         P   Y I   FR E       R       E       
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKVYYIGPMFRYERPQAGRLRQFHQIGVECFGSSNP 139

Query: 162 SFDLTPEGSKHSY--NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
           + D+        +       + +   + LG  +         I   L  +  +  D+   
Sbjct: 140 ATDVETIAMADQFFKEIGIENVVLHLNTLGSTASRTAYRQALIDYLLPMKDQLSKDSQRR 199

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                   +D     +    ++  S+ + + E+    + A   + +    D + +   V 
Sbjct: 200 LEENPLRVLDSKEKEDKQAVENAPSILDYLDEESQEHFDAVRAMLDGLGIDYVIDTNMVR 259

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                   IF F TK           A G+   +     G         +          
Sbjct: 260 GLDYYNHTIFEFVTKVDGNELT--VCAGGRYDGLVEYFGGPATPGFGFGMGLERLLLILD 317

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +       + +         A  ++   L + G     D +G ++ +QF  AD+ 
Sbjct: 318 KQGVELPVEASLDVYVAVLGSEAEVAALELVQALRRQGFIAERDYLGRKLKAQFKSADVF 377

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G    + +G   V   ++ +K+  T      S+E+V N      +
Sbjct: 378 GAKTIIALGGSEVESGQITVKNNQTRQEVTTSIEDVKNDFQTILN 422


>gi|253582253|ref|ZP_04859476.1| histidyl-tRNA synthetase [Fusobacterium varium ATCC 27725]
 gi|251835792|gb|EES64330.1| histidyl-tRNA synthetase [Fusobacterium varium ATCC 27725]
          Length = 415

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 115/400 (28%), Gaps = 22/400 (5%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           ++ I +E     G   +  P  +  DL+        D   KEM    DR ++++   P +
Sbjct: 24  ISKIAQEVFENYGYSYIKTPIFEETDLFKRGIGEGTDVVEKEMYTFKDRGERSITLRPEN 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   +  +    +     +Y     FR E        R REF          +    
Sbjct: 84  TASVVRSYLENGIYGKEDVTRYYYNGSMFRYERPQAG---RQREFNQIGVEVLGESSPIL 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD--TGETQVFCSKDFM 228
                 M  + L       L+       +         + +   +    E    C     
Sbjct: 141 DAEVIAMSFTLLEKLGISDLEVHINSVGTTASRTQYREKLLNFLNPIKEELCEDCQMRME 200

Query: 229 DFPIPSENTDFDDIISLNSIV--------EQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
             P+   +   D    L            E+  A Y       +      + ++K V   
Sbjct: 201 KNPLRVLDCKIDKCKELTKDAPSIIDSLTEEERAHYEEVKKYLDIFGIKYVEDSKLVRGL 260

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
                 ++   T   L    T  G    D+ ++            AA +E          
Sbjct: 261 DYYSSTVYEIVTNK-LGAQGTVLGGGRYDNLLKQLGDKDIPAVGFAAGVERMMMLVEDYP 319

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
            +S   +   L          +D   KI   L   G   + D   + + S    AD LG 
Sbjct: 320 SNSPDVYVAWLG------DNAKDFGIKITKILRDAGIKTYVDFNSKGMKSHMKKADKLGV 373

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              +I G   ++ + V +K+ L   +E++  E+ +     
Sbjct: 374 KYCIIAGEDEINKNVVILKNFLKRTQEELPFEKAMEIIKE 413


>gi|212212368|ref|YP_002303304.1| histidyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
 gi|229558652|sp|B6IZN1|SYH_COXB2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|212010778|gb|ACJ18159.1| histidyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
          Length = 421

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 132/412 (32%), Gaps = 39/412 (9%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +    R   +     E+  P ++   L+  +     D   KEM    DRN  ++   P  
Sbjct: 25  LENACRSVVSAYHYREIRFPVVEQTALFKRTIGEATDIVEKEMYTFTDRNGDSLTLRPEG 84

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
                     +   Y  +   +Y     FR E   +    R R+F      ++ +     
Sbjct: 85  TAGCVRAGIQNGLFYNQIQRLWYL-GPMFRHERPQKG---RYRQFYQLGVETYGMAGAPI 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMR-------AESGPIGGDLSHEFIVLADTGETQVFC 223
           +     M    LR++  LGL+S            +S          ++   +  E     
Sbjct: 141 EAELIFMC---LRLWKALGLESCIHLELNTLGTLDSRNAYRQALVTYLQSREK-ELDEDS 196

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR------V 277
            +     P+   ++   D+  L +   +       TS  H ++L   L + +        
Sbjct: 197 RRRLHTNPLRILDSKNPDLQPLLAEAPKLIDYLDETSRRHFDQLRSLLDQAEVPFIVNPT 256

Query: 278 SARGIEV--GHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             RG++     +F       G + ++     +             + G  A      ++ 
Sbjct: 257 LVRGLDYYTHTVFEWVTDQLGAQGTVCAGGRYDNLVELLGGKSTPAAGFAAGLERLVLLL 316

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                        V     ++I      Q      E++   L +   +   D  G  + S
Sbjct: 317 RGVQECLDKIDIYVVIAGEAVI------QEGLLMTEQLRNVLPEWVIEA--DLSGSSLKS 368

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHR 441
           QF  AD  G    +++G + +  + V +KH R T  +++++ + +I+Y    
Sbjct: 369 QFKRADKSGAKWALVIGEEEIKTNTVTLKHLRETVPQKNLTRDTLISYLKSE 420


>gi|42522656|ref|NP_968036.1| histidyl-tRNA synthetase [Bdellovibrio bacteriovorus HD100]
 gi|39573852|emb|CAE79029.1| hisS [Bdellovibrio bacteriovorus HD100]
          Length = 460

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 68/426 (15%), Positives = 133/426 (31%), Gaps = 55/426 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP        V     E+    G  E+  P  + +D++  +     D   KE   
Sbjct: 54  GTRDLLPEDSILFRFVEESAYEKALLYGYGEIETPIFEFSDVFHRTLGETSDVVNKETYD 113

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  +++   P     +   F S     +NLP  FY     FR E   +    R R+F
Sbjct: 114 FTDRGGESLTLRPEGTAGVARAFISEGM-MQNLPLKFYYSGPMFRYERPQKG---RYRQF 169

Query: 156 LMKDAYSFDL-TPEGSKHSYNKMFVSYLRI---------------------FHRLGLKSI 193
               A      +P     + +  +    +I                     +    +   
Sbjct: 170 YQLGAECLGYESPLADVETISLAWDLLKKIGISDDCTLEINTLGDAESRAAYRDTLVNYF 229

Query: 194 PMRAESGPIGGDLSHE-----FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
               +       +  E      +   D G+ ++  +   ++  +    T  D    + + 
Sbjct: 230 TAHKDQLSEDSKMRLEKNPLRILDSKDEGDKKLNANAPKLEQSLNQ--TSQDFFKKVIAG 287

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
           +E+   PY         K+ D L          +        G + ++     + G    
Sbjct: 288 IEKLGIPY---------KINDHLVRGLDYYCHTVFEFTTTKLGAQGTVLAGGRYDGLIET 338

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
               +    G  A            D    + P  +A  K  +I +   D+   D   K+
Sbjct: 339 MGGPKTPGVGWAAG----------IDRLADLTPKELATKKEVIIAVVGADEQGEDESVKV 388

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              +   G        G ++G +   A+ LG    +I+G   V++  V +K+  TG +++
Sbjct: 389 AHEMRVRGFKTENFLSG-KMGKKMQKANKLGAHYALILGGNEVTNKTVTVKNFTTGEQKE 447

Query: 429 MSLEEV 434
           ++  E+
Sbjct: 448 ITRAEL 453


>gi|223994633|ref|XP_002287000.1| glycyl tRNA synthetase [Thalassiosira pseudonana CCMP1335]
 gi|220978315|gb|EED96641.1| glycyl tRNA synthetase [Thalassiosira pseudonana CCMP1335]
          Length = 683

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 81/286 (28%), Gaps = 14/286 (4%)

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           +    + A+      +    S                   +  +A   P+   +  +   
Sbjct: 387 QHLTTEMAHYACDCWDLEIQSSYGWVECVGHADRACYDLDVHGKATKTPMIATMKLDEAR 446

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             +  + +         F                +  +    P A T +   +   D   
Sbjct: 447 EVEVAKLKFDRKALGKTFKGDQRVVAAALEALAENWADFE--PVATTLESDGKATVDGFE 504

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
             K +     E   +       S+                 MG      +       ++ 
Sbjct: 505 ITKEMVTWKKETKKVHEIKYTPSVIEP-----------SFGMGRILYSLLEHCFYQRDAD 553

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                + +  +VAP K +++ I + D+      ++I A L         D     +G ++
Sbjct: 554 EQRCVMRFKPAVAPHKCAVLPISSGDE-VNAVVDEIAADLMDSDMATRVDKSTASLGRRY 612

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           + AD +G P  V V    ++D  V ++ R + ++  +   EV    
Sbjct: 613 SRADEVGVPFAVTVDFDTLADGTVTLRERDSTVQIRLPKSEVTKTV 658


>gi|332296201|ref|YP_004438124.1| Histidyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
 gi|332179304|gb|AEE14993.1| Histidyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
          Length = 419

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 129/413 (31%), Gaps = 34/413 (8%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAM 104
            K  + +  + ++  N  G  ++  P  + A L+V S     D   KEM    D+ D+ +
Sbjct: 17  AKIYEKIENVSKKIMNLYGFSQIRTPIFEDAGLFVRSLGETSDVVQKEMYLFKDKGDRLL 76

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD 164
              P     +        K  +N P   +     FR E        R R+F    A    
Sbjct: 77  ALRPEGTAPVIRAII-ENKLAQNSPIKLFYTGQMFRYERPQAG---RFRQFYQFGAEIVG 132

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLG--LKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
                S        +  L+          +     +   +  ++   F+   +  E    
Sbjct: 133 THDPISDFEIIDSSIKILKELGVEYELHLNSVGCMDCRNVYKEVLLTFLKNHE-NELCEN 191

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--- 279
           C       P+   +   D    + S   + T        +H EKL   L + K       
Sbjct: 192 CKTRMYKNPLRVLDCKEDQCKLITSAAPKITDYLCDGCKIHFEKLQSYLKKFKIEYILDP 251

Query: 280 ---RGIEVGH-------IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              RG++           F  G++ ++     + G   +     +   G  +       I
Sbjct: 252 RLVRGLDYYTKTAFEALNFSLGSQNAVLGGGRYDGLAEELGGKNLPGVGFASGIERLVTI 311

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF-WDDMGEQI 388
               D                +I +  ++    D   +  A+L    C +F +D    + 
Sbjct: 312 LERLDKTYEKEHK------FMVIPVTENE---FDFALEFLAQLRNFVCSLFPYDYKNLKS 362

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             +   A  L     V++G   + ++ + +K+   G ++  S +E +N  S+ 
Sbjct: 363 SMKL--ASKLDCDYVVLIGQDEIKNNMISLKNLENGQQKSFSKDEFLNIISNE 413


>gi|329569946|gb|EGG51701.1| conserved domain protein [Enterococcus faecalis TX1467]
          Length = 49

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 35/48 (72%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQK 48
          M++SK  +P L+E P DAE+ SH+++LR G I Q + GIYS+LPL  +
Sbjct: 1  MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANR 48


>gi|254525623|ref|ZP_05137675.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
 gi|221537047|gb|EEE39500.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
          Length = 426

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/430 (13%), Positives = 117/430 (27%), Gaps = 38/430 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP       NV  I+ E+ +R    E+  P L+  +L+V       D   KEM  
Sbjct: 9   GTVDLLPNKLIKWQNVEKILLEQLSRASIKEIRTPILEMTELFVRGIGEGTDVVSKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +++    P     +         S   L   +Y +   FR E        R R+F
Sbjct: 69  FLDRGERSCTLRPEGTASVARALIQSGISSNPLQKLWY-MGPMFRYERPQAG---RQRQF 124

Query: 156 LMKD-AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                 +    +           +    ++  +     I     +     +    F+   
Sbjct: 125 HQLGVEFIGHDSVRSDIEIIALAWDILDKLGIKELNLEINTLGNTND-RSNFQKSFLNWL 183

Query: 215 DTGETQVFCSKDFMDFPIP----------SENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
           +  +  +           P          ++    +     + + E+    Y+   +   
Sbjct: 184 EINKDSLDLDSQNRITKNPLRILDSKNIQTKKALENAPRLFDFLSEKSLKRYSDLKNQLE 243

Query: 265 EKLFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                 +     V          F       G++ ++     +     +       + G 
Sbjct: 244 VLKIPYVENFNLVRGLDYYTHTAFEITSGALGSQATVCGGGRYDDLIKQMGGPNTPAIGF 303

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                   ++              +   + + I I     +       +  +L K    V
Sbjct: 304 AIGLERLILLA----------GKELEVPRNTDIYIINQGLIAESYAMDLSRKLRKHDLIV 353

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSLEEVI 435
             D  G     QF  A+ L     +++G    +  +  I+           E +S+E+ I
Sbjct: 354 ELDLSGSSFSKQFKKANKLKSKSIIVIGDDEAAKREFLIRLFDQAGKRNKEEVISIEDNI 413

Query: 436 NYASHRFSNN 445
                   NN
Sbjct: 414 -KLEKWIHNN 422


>gi|145636363|ref|ZP_01792032.1| histidyl-tRNA synthetase [Haemophilus influenzae PittHH]
 gi|145270528|gb|EDK10462.1| histidyl-tRNA synthetase [Haemophilus influenzae PittHH]
          Length = 423

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 133/416 (31%), Gaps = 35/416 (8%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y     FR E   +    +  +  ++     +  
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWYI-GPMFRHERPQKGRYRQFHQVGVEVFGIANPE 138

Query: 167 PEGSKHSYNKMFVSYLRIFHR-------LGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +             L I          +G         S  +G   +H+ ++  +  E 
Sbjct: 139 IDAELIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLENHQDLMNDEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKR 276
            V      +D   P      D+   L   ++      + T       L D++    E   
Sbjct: 199 LVRNPLRILDTKNPELQKVLDNAPKLLDYLDDE----SRTHFEQLCSLLDAVGIQYEINP 254

Query: 277 VSARGIEV--GHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAA 327
              RG++     +F       G + ++     + G       H      + +G  R+V  
Sbjct: 255 KLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAMGLERLVLL 314

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           V E + +       D    ++     +        +  EK+ + L     +         
Sbjct: 315 VQEVNPNVPAKSAVDIYVVYQGEGATL-----AAFELAEKVRSELP--HLNTMLHCSSGN 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
              QF  AD  G  L +++G   V + +V +KH   G  ++ + L  +I+Y   +F
Sbjct: 368 FKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVNIIDYLQTQF 423


>gi|207723165|ref|YP_002253564.1| histidyl-trna synthetase (histidine--trna ligase)(hisrs) protein
           [Ralstonia solanacearum MolK2]
 gi|207743443|ref|YP_002259835.1| histidyl-trna synthetase (histidine--trna ligase)(hisrs) protein
           [Ralstonia solanacearum IPO1609]
 gi|206588359|emb|CAQ35322.1| histidyl-trna synthetase (histidine--trna ligase)(hisrs) protein
           [Ralstonia solanacearum MolK2]
 gi|206594840|emb|CAQ61767.1| histidyl-trna synthetase (histidine--trna ligase)(hisrs) protein
           [Ralstonia solanacearum IPO1609]
          Length = 423

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/422 (12%), Positives = 100/422 (23%), Gaps = 30/422 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLAD 98
             LP      ++ +  +R      G  ++  P ++   L+V   G   D   KEM    D
Sbjct: 3   DLLPGDAPLWEHFDNAVRSMLRAYGYQQIRTPIVEHTQLFVRGIGEVTDIVEKEMYSFTD 62

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMRSRE 154
             +   +                     + P   +     FR E   R           E
Sbjct: 63  SLNGEQLTLRPEGTAAAVRAVIEHNLLYDGPKRLWYTGPMFRHERPQRGRYRQFHQVGVE 122

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            L       D                         L     RA           +F  + 
Sbjct: 123 ALGFAGPDIDAEVILMCQRLWDDLGLVGLKLELNSLGQAEERAAHRADLIKYLEDFQDIL 182

Query: 215 DTGETQVFCSKDF--MDFPIPSENTD------FDDIISLNSIVEQWTAPYAATSDVHNEK 266
           D    +   +     +D   P+            D +   S+           ++     
Sbjct: 183 DEDSKRRLYTNPLRVLDTKNPALQEMAAGAPKLIDYLGEASLKHFEGVQALLKANNIPYT 242

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           +   L          +        G + ++     +     +       + G        
Sbjct: 243 INPRLVRGLDYYNLTVFEWTTDKLGAQGTVAGGGRYDPLIEQIGGKPAPACGWAMGVERI 302

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW----D 382
             +                   + +++     QV          RL   G DV      +
Sbjct: 303 IELLR-----EEKLAPEPQGCDVYIVHQGDQAQVQALVA---AERLRDAGLDVILHCSPE 354

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEVINYA 438
                  SQF  AD  G    VI+G   V+    +IK          ++ +  +++++  
Sbjct: 355 GRNGSFKSQFKRADASGASYAVIIGDDEVAAGVAQIKPLRGEPNADTQQTVPSDQLVDRL 414

Query: 439 SH 440
             
Sbjct: 415 ID 416


>gi|159903269|ref|YP_001550613.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
 gi|229558704|sp|A9B9Z7|SYH_PROM4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|159888445|gb|ABX08659.1| Histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
          Length = 423

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 61/401 (15%), Positives = 109/401 (27%), Gaps = 27/401 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP+  +    V  + R   +R G  E+  P L+  +L+        D  GKEM  
Sbjct: 9   GMVDLLPMQTQRWQIVENLARHHFHRAGLKEIRTPLLEITELFARGIGEATDVVGKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR D++    P     +      H    +  P   +     FR E        R R+F
Sbjct: 69  FLDRGDRSCTLRPEGTASVVRSVVQHGLLNQG-PQRLWYGGPMFRYERPQAG---RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                  F L    +      +      +   LGLK + +   S     D  +    L +
Sbjct: 125 HQMGVEFFGLPSIHADAE---LISIAWDLLQDLGLKDLKLELNSLGTFEDRQNYHARLNE 181

Query: 216 TGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             E                 P+   +T       L       T   +  S    ++ F  
Sbjct: 182 WLECNFKLLDKDSQDRIHKNPLRILDTKNQSTQELLKDAPLLTDYLSDLS----KERFLC 237

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--------GAM 322
           L E         ++ H    G  Y    +     +         G            G  
Sbjct: 238 LQEALHKLKIPFDLNHNLVRGLDYYCHTAFEITSSQLGAQATVCGGGRYDRLVKQLGGPD 297

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                          ++         + +  I   +    +    +  +L      V  D
Sbjct: 298 TPSIGWAIGMERLIILLEDSIHKEQFVDVYFINRGELPAIE-ALSLTRKLRAFNIIVELD 356

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
                   QF  A+       +I+G   ++  ++ +K   +
Sbjct: 357 HSQANFSKQFKRANRSNAKWAIIMGEDEIAKGEIRLKRLTS 397


>gi|90021082|ref|YP_526909.1| histidyl-tRNA synthetase [Saccharophagus degradans 2-40]
 gi|89950682|gb|ABD80697.1| histidyl-tRNA synthetase [Saccharophagus degradans 2-40]
          Length = 423

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/420 (12%), Positives = 123/420 (29%), Gaps = 23/420 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        + + +     R G  E+  P L+  +L+  S G   D   KEM  
Sbjct: 9   GMNDLLPQDSPVWQYLESTVTTLFKRYGYQEIRFPILEQTELFKRSIGEVTDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             DRND+++   P            +    +   L    +     FR E   +  + +  
Sbjct: 69  FKDRNDESLTLRPEGTASCVRACEQNQLLFNRGTLTQKLWYQGPMFRYEKPQKGRLRQFH 128

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVS-------YLRIFHRLGLKSIPMRAESGPIGGDL 206
           +F ++         +      +                 + LG      + ++  +    
Sbjct: 129 QFGVEAFGLNGPDIDAELLIMSARLWKELGISSAVELQLNSLGSSDARAKFKADLVAFLE 188

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL--NSIVEQWTAPYAATSDVHN 264
            H+  +  D+           +D          D+  SL      E         + +  
Sbjct: 189 QHKERLDEDSQRRLGSNPLRILDSKEAKTQALLDEAPSLLDYLDDESLAHFEQLKALLDA 248

Query: 265 E----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 +   L        + +        G++ ++     + G   +       + G G
Sbjct: 249 AGVAYTINPRLVRGLDYYGKTVFEWVTTQLGSQGTVCAGGRYDGLVNQLGGQPTPAVGFG 308

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                  ++    +       +      + ++ +           E+I  R   +   V 
Sbjct: 309 MGIERLVLLLQEMNVLPE---EIFQTLDVYIMAVGDVAPAAFSLAEQIRDRFPAM--RVQ 363

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYAS 439
               G    +Q   AD  G  + +I+G   V+  +V +K+ R    +  +   ++++  +
Sbjct: 364 THCGGGSFKNQMKKADRSGADVALILGENEVAAQEVTLKYLRKDQPQTTIKQTDLLDLLA 423


>gi|107103322|ref|ZP_01367240.1| hypothetical protein PaerPA_01004391 [Pseudomonas aeruginosa PACS2]
          Length = 419

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/420 (12%), Positives = 109/420 (25%), Gaps = 26/420 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP    A   +        +  G  E+ +P L+  +L+        D   KEM    DRN
Sbjct: 5   LPEQTPAWRYLERTFAGLLDGYGYSEIRLPILEFTELFARGIGEGTDVVDKEMYTFLDRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            +++   P            H  S        +     FR E +P+ G  R    +  + 
Sbjct: 65  GESLTMRPEGTAGCVRAVLEHGLSGGGQVQKLWYTGPMFRYE-KPQKGRYRQFHQIGVEV 123

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS------HEFIVLA 214
           ++       ++       +             +     S               E     
Sbjct: 124 FNLPGPDIDAELIILTWRLWQKLGMADAVTLQLNTLGSSEARARYREALVAYLQERFEQL 183

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISL----NSIVEQWTAPYAATSDVHNE----K 266
           D    +   +          E+T    + +         E         + +       +
Sbjct: 184 DEDSQRRMTTNPLRILDSKVESTQALLVGAPTLHDYLDEESIAHFEGLKARLDAVGLRYE 243

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           +   L        R          G + ++     + G   +         G        
Sbjct: 244 INQKLVRGLDYYCRTAFEWVTDKLGAQGTVCGGGRYDGLVSQFGGKPTPGVGFAMGVERL 303

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDM 384
            ++  +              +  +        +    A   +  +L     G  +  +  
Sbjct: 304 VLLLETLGVIPAELNRPADLYVCAFG------EPAELAALTLAEQLRSAIPGIRLLVNAG 357

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHRFS 443
                SQF  AD  G    +I+G   V++  V  K  R  G ++ ++ + +  + +   +
Sbjct: 358 AGSFKSQFKKADKSGARFALILGEDEVANRVVGFKPLRDEGEQQSIAWDALPEHLAACLA 417


>gi|83647149|ref|YP_435584.1| histidyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
 gi|83635192|gb|ABC31159.1| histidyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
          Length = 424

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 65/437 (14%), Positives = 118/437 (27%), Gaps = 63/437 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        +    R    + G  E+ +P ++  DL+  S G   D   KEM  
Sbjct: 9   GMNDVLPEQTPIWRYLEDTARCLFEQYGIEEIRMPIVEQTDLFKRSIGEVTDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   +      +Y     FR E   +    +  + 
Sbjct: 69  FEDRNGDSLTLRPEGTAGCVRAGEEHGLLFNQTRRLWYS-GPMFRHERPQKGRYRQFHQI 127

Query: 156 LMK------------------------------DAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            ++                                +   +    ++  Y +  V+YL  +
Sbjct: 128 GVECFGFNGPDIDAELIIMTARLWKKLGLSDHVQLHINSIGSAEARAEYRRALVNYLGQY 187

Query: 186 HRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                +    R  + P  I      +   +                          D   
Sbjct: 188 EDQLDEDSRRRLSTNPLRILDSKDAKTQEILQGAPLFNDFLDAESAQHFAGLRAFLDKAG 247

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
              ++  +             E + DSL     V A G   G +   G K          
Sbjct: 248 LSYTVNPKLVRGLDYYGKTVFEWITDSLGAQGTVCAGGRYDGLVAQLGGK---------- 297

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                      G+ G+G    V  ++                    +   I A  +    
Sbjct: 298 -----------GTPGVGFAMGVERLVLMLETLNLTPAS----LQDRADFFIAALGEGAEA 342

Query: 364 ACEKIYARLS--KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-H 420
              ++  +L   +    V  +  G    +Q   AD       +++G   VS  +V IK  
Sbjct: 343 YAFEVAEQLRDLQQNVRVVMNCGGGSFKAQMKKADKSSAAFALLLGESEVSQREVTIKPL 402

Query: 421 RLTGIREDMSLEEVINY 437
           R    ++ ++LEE I  
Sbjct: 403 RTDQAQKTLALEEFIQR 419


>gi|228478117|ref|ZP_04062728.1| histidyl-tRNA synthetase [Streptococcus salivarius SK126]
 gi|228250297|gb|EEK09550.1| histidyl-tRNA synthetase [Streptococcus salivarius SK126]
          Length = 426

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 56/408 (13%), Positives = 110/408 (26%), Gaps = 19/408 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  + RE   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVENVARETFKKYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P   Y I   FR E        R REF       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYIGSMFRYERPQAG---RLREFHQLGVECFGS 136

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--------IGGDLSHEFIVLADT 216
             P     +    +  +  +  +     +     +          I         +  D+
Sbjct: 137 KNPATDVETIAMAYQLFNTLGIKDVTLHLNSLGNTESRLAYRQALIDYLTPMRESLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+  A +     + +      + +  
Sbjct: 197 QRRLDENPLRVLDSKEKEDKVAVENAPSILDYLDEESQAHFDEVRTMLDSLNIPYVIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T            A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITTIDKSELT--ICAGGRYDSLVEYFGGPETAGFGFGLGLERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   +   + I            ++   +   G     D +G +I +QF  A
Sbjct: 315 VLDKQGIELPVEENLDVYIAVLGSGANGKALELVQAIRYQGFKAERDYLGRKIKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D       + +G   V   +V +K+  T     +S EE+    +    
Sbjct: 375 DTFKAKTVITLGESEVESGQVNVKNNATREEVTVSFEELTKNFAAVLE 422


>gi|157111109|ref|XP_001651394.1| glycyl-tRNA synthetase [Aedes aegypti]
 gi|108878540|gb|EAT42765.1| glycyl-tRNA synthetase [Aedes aegypti]
          Length = 764

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/418 (13%), Positives = 123/418 (29%), Gaps = 76/418 (18%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R    +   LPF   QI   FR+E+ PR G++R REF M +   F
Sbjct: 326 FLRPETAQGIFVNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMCEIEHF 385

Query: 164 DLTPEGSKHSYNKMFVS----YLRIFHRLGLKSIPMRA----ESGPIGGDLSHEFIVLAD 215
                     +  +       Y       G  +  +       SG +  +    F+    
Sbjct: 386 CDPQLKDHPKFENVKDIVMTLYSACNQMDGKSAQQITIGEAVSSGLVANETLGYFMARIQ 445

Query: 216 TGETQV--------FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD---VHN 264
               ++        F      +    + +    + ++    +E       +  D     N
Sbjct: 446 QFMLKIGILPDRLRFRQHMGNEMAHYACDCWDAECLTSYGWIECVGCADRSAYDLTQHTN 505

Query: 265 EKLFDSLPENKRVSARGIEV----------GHIFYFGTKYSLPMSAT------------- 301
                 + E K  + + IEV          G +F    K    + A              
Sbjct: 506 ATGVKLVAEKKLPAPKTIEVTEVVPNKAALGKVFKKEAKNITELLAKLSLSDVEAIGKNL 565

Query: 302 ------FKGADG---------------------KDHYVQMGSYGIGAMRVVAAVIESSHD 334
                     +G                     ++    +     G  R++ +++E S  
Sbjct: 566 ADKGEHVLDVNGSDVSLNSDMIAVKTTSKTIHVEEITPSVIEPSFGVGRIMYSLLEHSFQ 625

Query: 335 GKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +              +  +K      +++       +KI + L+ V      DD    I
Sbjct: 626 MREGDEQRGYFSLPPIVAPLKCSVLPLSNNAEFAPFVKKISSALTSVDISHKVDDSSGSI 685

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G ++A  D +  P  + +    + +   V ++ R +  +  + ++EV         + 
Sbjct: 686 GRRYARTDEIAIPYGITIDFDTLKEPHSVTLRERDSMKQVRIGVDEVSQVVRDLARSR 743



 Score = 42.4 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+    R+        +E+    L   
Sbjct: 158 LLKRRFFYDQSFAIYGGITGQYDFGPMGCALKSNMINTWRQFFVLEEQMLEVDCSILTPE 217

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  D +   M++     + 
Sbjct: 218 PVLKASGHVDRFADLMVKDVKNGEC 242


>gi|326511363|dbj|BAJ87695.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 364

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 84/312 (26%), Gaps = 20/312 (6%)

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                G    R +L       D      +         Y        ++      E   I
Sbjct: 28  NNETLGYFIGRVYLFLTQLGIDKDRLRFRQHLPNEMAHYAADCWDAEIECSYGWIECVGI 87

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               +++    +D     +   + F +     +         L    +          + 
Sbjct: 88  ADRSAYDLRAHSDKSGVPLEAHEKFAEPREVEKLVITPSKKELGLTFKGNQKAVLEALEA 147

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-----ADGKDHYVQMGSY 317
             E    +L     + ++G     +   G   ++  +             +     +   
Sbjct: 148 MGETE--ALGMKAALESKGEVEFKVCTLGRDVTVKRNMVSINMEKKKEHQRKFTPSVIEP 205

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSV---APFKISLINIK------AHDQVCRDACEKI 368
             G  R++  + E     +     D       F   +  IK         +      +KI
Sbjct: 206 SFGIGRIIYCLFEHCFYQRTGRTDDEQLNVFRFPPLVAPIKCTVFPLVKVEKFDIVAKKI 265

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L+  G     D  G  IG ++A  D +G PL + V S       V I+ R +  +  
Sbjct: 266 SKALTTAGISHIIDITGTTIGKRYARTDEIGVPLAITVDSTT----SVTIRDRDSKDQIR 321

Query: 429 MSLEEVINYASH 440
           + ++EV +    
Sbjct: 322 IEVDEVASVVKE 333


>gi|167587051|ref|ZP_02379439.1| histidyl-tRNA synthetase [Burkholderia ubonensis Bu]
          Length = 446

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 64/432 (14%), Positives = 119/432 (27%), Gaps = 27/432 (6%)

Query: 32  IHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-D 87
           I + +  KG+   LP      +   A ++      G   +  P ++   L+    G   D
Sbjct: 8   IEKLAGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTD 67

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
              KEM    D  +   +                     + P   + I   FR E   R 
Sbjct: 68  IVEKEMYSFTDALNGEHLTMRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRG 127

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F      +       +      M           G+K                
Sbjct: 128 ---RYRQFHQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHR 184

Query: 208 HEFIVLADTGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            E I   +     +     +     P+   +T    +  +     +        S  H +
Sbjct: 185 VELIKYLEQHVDALDADAQRRLYTNPLRVLDTKNPALQEIVQNAPKLIDFLGDHSRAHFD 244

Query: 266 KLFDSLPENKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            L   L  N           RG++  ++  F       + A    A G  +   +   G 
Sbjct: 245 GLQRLLKANNIPFTINPRLVRGLDYYNLTVFEWVTDK-LGAQGTVAAGGRYDPLIEQLGG 303

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                    +      + +     +       + +    +  R+       RL   G DV
Sbjct: 304 KPTAACGWAMGVERILELLKEEQLMPEQDGVDVYVVHQGEAAREQAFIAAERLRDTGLDV 363

Query: 380 FW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGI------RED 428
            +    D       SQ   AD  G    VI G + +++  V +K  R TG       ++ 
Sbjct: 364 IFHCSADGAPASFKSQMKRADASGAAFAVIFGEEEIANGTVGVKALRGTGEEGEKNAQQT 423

Query: 429 MSLEEVINYASH 440
           + +E +  +  +
Sbjct: 424 VPVESLTEFLIN 435


>gi|219871010|ref|YP_002475385.1| histidyl-tRNA synthetase [Haemophilus parasuis SH0165]
 gi|219691214|gb|ACL32437.1| histidyl-tRNA synthetase [Haemophilus parasuis SH0165]
          Length = 419

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 59/420 (14%), Positives = 115/420 (27%), Gaps = 36/420 (8%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLA--DRNDKAM 104
               V + IR+     G  EM  P ++S DL+        D   KEM      +   ++ 
Sbjct: 11  LWQWVESNIRDTFASYGYTEMRSPIMESTDLFKRGVGEATDIVEKEMFTFTRSEEAGESF 70

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD 164
              P            H   Y      +Y     FR E   +    R R+F       F 
Sbjct: 71  TLRPEGTAGCVRAAIEHGWIYNQEQRLWYI-GPMFRYERPQKG---RYRQFHQAGVEIFG 126

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           +    +      +              ++ + +  G        E +V        V   
Sbjct: 127 IPNAEADAELIVLTARLWEKLGIREHVTLQLNSIGGLEVRTRYREALVAFLQNHLDVLKQ 186

Query: 225 KD------------FMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDSL 271
                          +D    +     +D   L+  ++    A +A    + +E      
Sbjct: 187 DPDSERRLTTNPLRILDTKNQALQAVLNDAPKLHDFLDDESKAHFARLCAILDEMGIAYE 246

Query: 272 PENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
              K V         +F       G + ++     + G   +         G        
Sbjct: 247 VNQKLVRGLDYYNKTVFEWVTTALGAQGTVCGGGRYDGLVAQLGGHATEGVGFAMGLERL 306

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDM 384
            ++             +V   +   I +    +       ++   L              
Sbjct: 307 VLLV-------QEVNPNVQLPRAVDIYVVHSGEGTTAVAFRLTETLRNAFPQLRTMLHTS 359

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYASHRFS 443
           G     QF  AD  G  + +++G   V++ KV +K       +  ++  ++IN  + RF+
Sbjct: 360 GGNFKKQFKRADKSGAKIALVLGESEVAEQKVVVKDLFGEAEQMTIAQADLINELTTRFA 419


>gi|116075543|ref|ZP_01472802.1| histidyl-tRNA synthetase [Synechococcus sp. RS9916]
 gi|116066858|gb|EAU72613.1| histidyl-tRNA synthetase [Synechococcus sp. RS9916]
          Length = 445

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 74/433 (17%), Positives = 130/433 (30%), Gaps = 37/433 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP        V A+ R    R G  E+  P L+  +L+        D  GKEM  
Sbjct: 9   GMVDLLPEQTCRWQAVEAVARVHFQRWGCREIRTPLLEVTELFARGIGEATDVVGKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR D++    P     +      +    +     +Y     FR E        R R+F
Sbjct: 69  FQDRGDRSCTLRPEGTASVVRSALQNGLLSQGAQRLWYG-GPMFRYERPQAG---RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIV 212
                    ++   S      +    L      GL          +          E++ 
Sbjct: 125 HQIGVEWLGVSSAASDAEVIALAWDLLADLGVEGLALEINSLGTPDDRLAYRTCLVEWLE 184

Query: 213 ------LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                  AD+ +         +D   P      ++   L    EQ  AP +        +
Sbjct: 185 ARRDQLDADSQQRLSTNPLRILDSKHPQTKALLEEAPLL----EQSLAPESLARHQAVLQ 240

Query: 267 LFDSLPENKRVSAR---GIEV-GHIF------YFGTKYSLPMSATFKGADGKDHYVQMGS 316
             D+L    + + R   G++  GH          G + ++     + G   +       +
Sbjct: 241 ALDALAIPYQCNPRLVRGLDYYGHTAFEITSDQLGAQATVCGGGRYDGLVQQLGGAATPA 300

Query: 317 YGIG-AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            G    M  +  V+E++           +       + +    +    A   +  +L   
Sbjct: 301 IGWALGMERLLLVLEAAATANPDGRAAQLVQAATPDVYVVNRGEQALQAALVLTRQLRSC 360

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TG--IRED 428
           G  V  D+ G   G QF  AD  G    +++G +      V IK         G   ++D
Sbjct: 361 GLAVERDESGSAFGKQFKRADRSGAAFALVLGDEEAERGVVRIKPLKAVPDADGLADQQD 420

Query: 429 MSLEEVINYASHR 441
            SL ++       
Sbjct: 421 RSLNDLPALVEAL 433


>gi|237747710|ref|ZP_04578190.1| histidine tRNA synthetase [Oxalobacter formigenes OXCC13]
 gi|229379072|gb|EEO29163.1| histidine tRNA synthetase [Oxalobacter formigenes OXCC13]
          Length = 454

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 56/432 (12%), Positives = 115/432 (26%), Gaps = 38/432 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      + +   +       G   +  P ++   L+    G   D   KEM  
Sbjct: 18  GMNDILPEDAPVWELLENTVESVLKSYGYERIRTPIVEETGLFARGLGAVTDIVEKEMYS 77

Query: 96  LADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D  +   +   P     +      H  +Y   P   +     FR E   R    R R+
Sbjct: 78  FEDSLNGDQLTLRPESTAGVVRAVVEHNLTYNG-PKRLWYSGPMFRHERPQRG---RYRQ 133

Query: 155 FLMKDAYSFDLTPEGSKH---------SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           F    A +                     +    +     + +G      R  +  I   
Sbjct: 134 FHQIGAEAVGFPGPDIDAELILLCQRLWDDLGLENIRLEINSIGNAGERNRHRADLIAYF 193

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA------T 259
             H+ ++  D            +D   P+     +    L   +E+ +  +         
Sbjct: 194 EQHKGLLDEDAQRRLYSNPLRILDTKNPTMQDMVNAAPKLLDYLEKESLDHFEGVQRILK 253

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            +     +   L        R +        G++ ++          G  +      +G 
Sbjct: 254 RNNIPYTINPRLVRGMDYYNRTVFEWISEELGSQGTVCG--------GGRYDPLFEMFGG 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                    +      + +     V     + + I    +        +   L   G DV
Sbjct: 306 KPTPSCGFALGMERLIELLKTQGDVNTTSKADVFIAHQGEDALPEAFVLAESLRNTGLDV 365

Query: 380 FWD----DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSL 431
                  + G    +Q   AD  G    V++G   V +    +K   +      +  +  
Sbjct: 366 IVYCTAANSGGSFKAQMKRADESGAAFAVLIGEDEVKNGCASVKALRSDNTADKQLSVPF 425

Query: 432 EEVINYASHRFS 443
           E+V +Y   + +
Sbjct: 426 EKVADYLVDQIA 437


>gi|256820207|ref|YP_003141486.1| glycyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
 gi|256581790|gb|ACU92925.1| glycyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
          Length = 516

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 20/255 (7%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       G  Q +             +    +        E+      A 
Sbjct: 260 FRMREFEQMEMQFFIKPGTQQKWYEYWKETRLKWHLSLGMGEENYRYHPHEKLAHYADAA 319

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +      E + + +R       F  G   KYS      F   + K +   +   
Sbjct: 320 CDI-EFRFPFGFKELEGIHSR-----TNFDLGNHEKYSGKKMQYFDPEENKSYTPYVLET 373

Query: 318 GIGAMRVVAAV---------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            IG  R+  AV         +E       +  P  +AP K++++ +   D    +  E+I
Sbjct: 374 SIGLDRMFLAVFSNSLQEEALEGGDTRTVLRLPFVLAPTKVAVLPLLKKD-GLPEVAEQI 432

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L     +V +D+    +G ++   D +G P  V V  + + D+ V ++HR T  +  
Sbjct: 433 VNELK-YDFNVAYDEKDA-VGRRYRRQDAVGTPFCVTVDHQTLEDNTVTLRHRDTMEQVR 490

Query: 429 MSLEEVINYASHRFS 443
           +++ E+ N  +    
Sbjct: 491 IAIPELRNTIAKEVD 505


>gi|118602669|ref|YP_903884.1| histidyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|166228607|sp|A1AWV6|SYH_RUTMC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|118567608|gb|ABL02413.1| histidyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 422

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 55/419 (13%), Positives = 125/419 (29%), Gaps = 24/419 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP       ++   I +     G   +  P ++  D +  +  G  D   KEM  
Sbjct: 10  GMSDLLPKDSAFWLSLERTIFDLFISYGYQNIRTPIVEKTDTFCRAIGGATDIVEKEMYS 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             +   +++   P        +   H      +   FY     + +   + R R      
Sbjct: 70  WIESGGESLSLNPEGTAGCVRMMIEHNLPREGIQKVFYQGAMFRRERPQKGRYRQFHQVG 129

Query: 153 REFLMKDAYSFDLTPEGSKH--SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            E         D       H         + +   + LG     +      I     ++ 
Sbjct: 130 LEVFGATNAKVDAELMMITHTLWQVLGLKNIVLEINTLGSSETRVAYRKILIAYFNQYKD 189

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL--- 267
            +  ++ +         +D    +  +  ++   L   +++ +A +      + + L   
Sbjct: 190 QLDENSLKRLKTNPLRILDSKNKAMRSLINNAPKLMDYLDKESAQHFEQFKTYLDALNVT 249

Query: 268 ---FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                 L        R +        G + ++     + G   K   +   + G+     
Sbjct: 250 YIINTCLVRGLDYYNRTVFEWTTTNLGAQGTICAGGRYDGLVEKMGGIPTPAVGLAIGLE 309

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW--D 382
              ++    +   I    S+    +         +  +    +I + L     +V    D
Sbjct: 310 RLILLLEVQNLMAIEPTLSIYLVALG--------EKAQIKSMQIASTLHDALPNVILYND 361

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMSLEEVINYASH 440
                  SQ   A+ +     +I+G + +++++V IK     G ++ M LEE I Y   
Sbjct: 362 LTLGSFKSQLKKANKIKAYFALILGEQELNNNQVSIKPLKGQGTQQTMDLEEAIKYLKE 420


>gi|119182388|ref|XP_001242329.1| hypothetical protein CIMG_06225 [Coccidioides immitis RS]
          Length = 654

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 85/285 (29%), Gaps = 25/285 (8%)

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +              ++  +      E +  AD     +   K+    P+    T  + 
Sbjct: 351 RQHMANEMAHYATDCWDAELLSSYGWIECVGCADRSAYDLSVHKNKTGAPLVVRETRAEP 410

Query: 242 IISLNSIVEQWTAPYAA---TSDVHNEKLFDSLPENKR--------------VSARGIEV 284
           +      V+     +           E   D+L +  R              +   G+  
Sbjct: 411 LRIEEWQVDIDRKKFGPRFKKDGKTVEAAIDALSQELREKLALDLDKDGKITIDVEGVND 470

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           G +   G         T    + +++   +     G  R++  ++E  +  +       V
Sbjct: 471 GKV-EIGKDLVKIEKRTRV-ENIREYTPNVIEPSFGIGRILYCLMEHVYWSREGDEARGV 528

Query: 345 APFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             F       K      +  Q  +    K+  +L ++G     DD    IG ++A  D L
Sbjct: 529 LSFPPLAAPTKVLLVPLSSHQSFQPLVRKLTLKLRRMGVSNRVDDSSASIGKRYARNDEL 588

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  + V  + V D+   ++ R +  +   S +E+         
Sbjct: 589 GTPFGITVDFQSVKDNTFTLRDRDSMKQVRASEDEICKAVKSLVE 633



 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G++ + P G     N+  + R+        +E+    L   ++   SG  D +   M +
Sbjct: 36 SGLFDYGPPGCALQANIVDLWRKHFVLEEDMLEVDCTMLTPHEVLKTSGHVDKFADWMCK 95


>gi|269836508|ref|YP_003318736.1| histidyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
 gi|269785771|gb|ACZ37914.1| histidyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
          Length = 455

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 132/436 (30%), Gaps = 40/436 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           Q  KG+   LP       +V +  R    R G   +  P L+  D+   +G+Y    K +
Sbjct: 13  QVLKGMRDILPQQMVLRQHVISTFRRVFERYGFEPIETPVLEYLDVL--TGKYGEDEKLI 70

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
               DR  + +         +     +H +   + PF  Y I+  FR +   R    R R
Sbjct: 71  YHFTDRGGREVGMRYDLTVPLARFVATH-RHELSFPFKRYHIEPVFRADRPQRG---RYR 126

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMF----------VSYLRIFHRLGLKSIPMRAESGPIG 203
           +F   DA         +      ++             + I HR  L+S+   A      
Sbjct: 127 QFWQCDADIVGTASMLADAEVIMVWIDALSAIHMPNFVIHINHRKLLQSMAQFAGVPEAQ 186

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA--------- 254
               H  I        +    +   +   P       D++ L    E   A         
Sbjct: 187 AVTIHRAIDKLGKIGREGVREEMLQNGISPEAADRVLDLVELEGEPEVVLAELRTRLAGN 246

Query: 255 PYAATSDVHNEKLFDSLPENK---------RVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             A       E+LF  L E              ARG++      F    S P   +  GA
Sbjct: 247 QLAQEGIADLEELFRYLGEMNADPKHYCLDLALARGLDYYTGPVFEAMVSEPNIGSLGGA 306

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
              DH + M           +  +E   D    +           ++     D+    A 
Sbjct: 307 GRYDHLIGMFLGEDIPATGASLGLERIIDVIQELNLLPQPRTVTDVLVTIFGDEELG-AS 365

Query: 366 EKIYARLSKVGCDVFWDD---MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               ++L   G +           +   Q   AD  G PL   +G + ++   V ++   
Sbjct: 366 LGFVSQLRAAGINAEVYLGERRDLR--RQMQYADRKGIPLAAFLGPEEIAAGTVNLRVMA 423

Query: 423 TGIREDMSLEEVINYA 438
           +G +  + + E ++  
Sbjct: 424 SGEQFTVPVGEAVDTI 439


>gi|57640913|ref|YP_183391.1| glycyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
 gi|73919754|sp|Q5JID8|SYG_PYRKO RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Glycine--tRNA
           ligase; Short=GlyRS
 gi|57159237|dbj|BAD85167.1| glycyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
          Length = 570

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 6/140 (4%)

Query: 307 GKDHYVQMGSYGIGAMRVVA----AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
           G+     +     G  R         +    D   +     +AP +++++ + A  +  +
Sbjct: 430 GEKIVPHVLEPSFGIDRPFYLLLENSLVIEEDRTYLRIKKDMAPIEVAVLPLVAK-EPLK 488

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                I+  L K G    +D+    +G ++   D +G P  V V ++   D  V I+ R 
Sbjct: 489 SIAYDIFRTLQKEGFIAVYDEKD-TVGRRYMRYDEIGTPYCVTVDNQTPEDGTVTIRDRD 547

Query: 423 TGIREDMSLEEVINYASHRF 442
           T  +  + +EE+        
Sbjct: 548 TREQIRVKIEELPKKLRELI 567



 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 48/148 (32%), Gaps = 7/148 (4%)

Query: 13  ENPRDAEIASHKLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           E P   EI    LM R G       I+  S+G Y + PLG      +   IRE   R G 
Sbjct: 3   EKPDKYEIL-QDLMRRRGFAWGSFEIYGGSRGFYDYGPLGATIKRKIERKIREAFQREGF 61

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +    +++ SG  + +   ++       +        E +  D      +   
Sbjct: 62  FELETPDITPEKVFIASGHVEKFVDPLVECKKCGARFRADHLVEEALGIDTEGMSAEHLT 121

Query: 127 NLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            L         +   EL   +      E
Sbjct: 122 QLIREHDIRCPECGGELSDVWYFNLMFE 149


>gi|145634635|ref|ZP_01790344.1| histidyl-tRNA synthetase [Haemophilus influenzae PittAA]
 gi|145268180|gb|EDK08175.1| histidyl-tRNA synthetase [Haemophilus influenzae PittAA]
          Length = 423

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 134/416 (32%), Gaps = 35/416 (8%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y     FR E   +    +  +  ++     +  
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWYI-GPMFRHERPQKGRYRQFHQAGVEVFGIANPE 138

Query: 167 PEGSKHSYNKMFVSYLRIFH-------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +             L I          +G         S  +G   +H+ ++  +  E 
Sbjct: 139 IDAELIMLTYRLWKALGIDQYVTLQLNSIGSLEARANYRSALVGFLKNHQDLMSDEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKR 276
            V      +D   P      D+   L   ++      +         L D++    E   
Sbjct: 199 LVKNPLRILDTKNPELQKILDNAPELLDYLDDE----SREHFEQLCALLDAVGIQYEINP 254

Query: 277 VSARGIEV--GHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAA 327
              RG++     +F       G + ++     + G       H      + +G  R+V  
Sbjct: 255 KLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAMGLERLVLL 314

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           V E + +       D    ++     +     V  +  EK+ + L     +      G  
Sbjct: 315 VQEVNPNVPVKSAVDIYVVYQGEGATL-----VAFELAEKVRSELP--HLNTMLHCSGGN 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
              QF  AD  G  L +++G   V + +V +KH   G  ++ + L  VI+Y   +F
Sbjct: 368 FKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGADQQTLDLVNVIDYIQTQF 423


>gi|310643536|ref|YP_003948294.1| histidyl-tRNA synthetase [Paenibacillus polymyxa SC2]
 gi|309248486|gb|ADO58053.1| Histidyl-tRNA synthetase [Paenibacillus polymyxa SC2]
          Length = 414

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 57/401 (14%), Positives = 122/401 (30%), Gaps = 19/401 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  +L+V       D   KEM    D+  ++M   
Sbjct: 20  WQVVEEKAREISRRFNYREIRTPMFEQTNLFVRGVGETTDVVEKEMYTFEDKGKRSMTLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  +           Y I   FR E        +  +F ++   + D   
Sbjct: 80  PEGTAGVVRSYVENKLYGEPDVTKLYYIGPMFRYERPQAGRQRQFHQFGIEAFGAMDPAL 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF-IVLADTGETQVFCSKD 226
           +    ++   F   L +       +    A S         +F + + DT   +     +
Sbjct: 140 DAEVIAFGYQFCRELGLKGVQVEINSVGNAASRAAYRQHLVDFLMPIKDTLTKESQARIE 199

Query: 227 FMDFPIPSENTDFDDIIS----LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                +     D D        L+S+ E+ +  +       +    +     + V     
Sbjct: 200 RNPLRVLDSKDDQDKFGGAPSILDSLDEESSTHFEKVKQNLDAMGVEYTVNPRLVRGLDY 259

Query: 283 EVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                F F     G   ++     + G  G          G G       +I      K 
Sbjct: 260 YTLTAFEFKAEGIGAIDTIGGGGRYNGLVGDLGGPDQPGIGFGIGLERIQLILEHQGVKL 319

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                      + +  +   +    +  ++++ +L + G     D +G ++ +Q   AD 
Sbjct: 320 NEAKP------LDIYMVALGEAAETEVTKQLF-KLRQAGFSAERDYLGRKMKAQMKSADR 372

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
                  I+G   +   ++ +K+  TG +  + L++++   
Sbjct: 373 FKARYTAILGDDELVKGEIALKNMETGEQRTVKLDQLVEEL 413


>gi|317151961|ref|YP_004120009.1| histidyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942212|gb|ADU61263.1| histidyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
          Length = 418

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 62/428 (14%), Positives = 120/428 (28%), Gaps = 41/428 (9%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSY 89
           I +  KG     P        +  + R+  +R    E+  P L+  +L+ +S     D  
Sbjct: 4   IQKI-KGFVDLFPEEAAKFTRMETLARDIFSRYAFGELRTPVLEKTELFQKSIGEDTDVV 62

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
           GKEM    DR D+++   P     +   F             F+     FR E   +   
Sbjct: 63  GKEMFTFPDRKDRSLTMRPEATAGVVRAFIESGTHQPGKVSKFFTFGPMFRYERPQKG-- 120

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIG 203
            R R+F   +A  F      +     ++ +      + LGL  + +   S       P  
Sbjct: 121 -RQRQFHQINAEIFGAPEAQAD---GELILMLRTFLNALGLTKLTVELNSLGCHACRPAY 176

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
                ++    D       C +     P+   +       +L       T       + H
Sbjct: 177 RQALIDYYTSKDRANFCEDCRRRMDTNPLRVLDCKVPGCKALVQDAPAITDHLCPECEAH 236

Query: 264 NE-------------KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                          +L   L        R          G + ++     + G      
Sbjct: 237 FADVRTILDGANVTYELNPRLVRGLDYYVRTCFEVSSHDIGAQTAVAGGGRYDGLIRSLD 296

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                + G        A++    +     +  +V     +   +                
Sbjct: 297 GPDCPATGFACGMERLALLLERLEAPAPDFYLAVVDNAAANAAMLF------------AQ 344

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDM 429
           +L   G        G  + S+   A+  G  + +I+G   + +  V +K     G +  +
Sbjct: 345 QLRDAGQSGEVGYCGGSMKSRMRAANKSGAKVCLIMGGDELDNGTVTVKPMTGDGEQTTV 404

Query: 430 SLEEVINY 437
           S  E +  
Sbjct: 405 SRAEYLAR 412


>gi|223041968|ref|ZP_03612152.1| histidyl-tRNA synthetase [Actinobacillus minor 202]
 gi|223017225|gb|EEF15653.1| histidyl-tRNA synthetase [Actinobacillus minor 202]
          Length = 414

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 63/416 (15%), Positives = 120/416 (28%), Gaps = 33/416 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               V   +R      G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 11  LWQWVETKVRNVLASYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 69

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P                Y N    +Y +   FR E   +    R R+F       F + 
Sbjct: 70  RPEGTAGCVRAAIERGWIYNNEQRLWY-MGPMFRHERPQKG---RYRQFHQAGVEVFGIP 125

Query: 167 PEGSKHSYNKMF----------VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                     +                  + +G         S  +     H+ ++  + 
Sbjct: 126 NPEIDAELIILTARLWKALGIDQHVSLQLNSIGSLEARANYRSALVAFLEQHQSLMSDEE 185

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA------TSDVHNEKLFDS 270
            E  V      +D    +     +D   L   +++ +  +         +     ++   
Sbjct: 186 KERLVKNPLRILDTKNQALQEVLNDAPKLLDYLDEESREHFTQLCSLLDAMGIQYEVNPK 245

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAV 328
           L        + +        G + ++     + G       H  Q   + +G  R+V  V
Sbjct: 246 LVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATQGVGFAMGLERLVLLV 305

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E + D       D    +      +           E + + L      V     G + 
Sbjct: 306 QEVNKDVPVAKAVDVYIVYSGEGATLN-----AFQIAETLRSELPD--LRVMTHCSGGKF 358

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHRFS 443
             QF  AD L     +++G   V++  V IK  R    +  +    ++     RFS
Sbjct: 359 QKQFKRADKLEAEFALVIGESEVTEKTVVIKDLRSGMEQITVPQTALVAELQKRFS 414


>gi|303244762|ref|ZP_07331092.1| histidyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
 gi|302484896|gb|EFL47830.1| histidyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
          Length = 373

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 63/376 (16%), Positives = 115/376 (30%), Gaps = 20/376 (5%)

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            S+    ++G  +   K++    D  ++ M   P     +   + + +K+    P   Y 
Sbjct: 3   VSSSYLKKTG--EDIRKQLFVFKDHGNREMGLRPELTSSVVRFYINELKN-LPKPLKLYY 59

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRL----- 188
               FR E        R REF            P       N       +I         
Sbjct: 60  FANCFRYENPQAG---RYREFWQMGCELIGSKYPIADAEIINLAMDGLNKIDMDYEINIG 116

Query: 189 --------GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                     +      E   I   +  E     +   +++  S +  D      N+  D
Sbjct: 117 HLGVLRGIFKEFNLSEDEELKIRRLIDKEDYKGLENYLSEIKSSDELRDIIFKILNSKGD 176

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
             +  +        P +  +  + E++ + +  +  V   GI  G  +Y G  + +    
Sbjct: 177 KSVISDLKEVLKDYPTSIEAMNNLEEILEFVKHDNIVVNFGIARGLDYYTGMVFEIYGKK 236

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                              G     A       D   +   D     +  LI     D+ 
Sbjct: 237 EGARQVCGGGRYDNLIELFGEKPTPAVGFAYGFDRVMLNIDDFEVEDESILIIPIKKDKK 296

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
               C  I   L K G  V  + M  ++      A+ +G    +IVG + +S  KV +K+
Sbjct: 297 LLKECLNIADVLRKSGKSVEIELMNRKLNKALNYANAVGINKVIIVGEQELSKGKVSLKN 356

Query: 421 RLTGIREDMSLEEVIN 436
             TG +E + L+E+ N
Sbjct: 357 MKTGEQELVGLDELEN 372


>gi|241761554|ref|ZP_04759641.1| histidyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241373862|gb|EER63395.1| histidyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 419

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 57/410 (13%), Positives = 126/410 (30%), Gaps = 27/410 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            ++V     E +   G     +P  +S  ++  S     D   KEM    DR+ + +   
Sbjct: 23  FNHVVNKFDEIRKLYGFKRAEIPVFESTAVFARSLGETTDVVSKEMYSFPDRSGEQLTLR 82

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +T  + +      + P         FR E   +    R R+F   DA       
Sbjct: 83  PEFTAGLTRAYLTSGWQQYS-PCKIATHGPVFRYERPQKG---RYRQFHQIDAEVIGAAE 138

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMR-----AESGPIGGDLSHEFIVLADT-----G 217
             +      +    L         ++ +      A        L   F    D+      
Sbjct: 139 PEADVELLSLADQLLESLGIKQHVTLHLNTLGDSASREAWRAALIEYFQGHFDSLSQESQ 198

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E         +D   P++    +    ++  + +  A +        +    +   + R+
Sbjct: 199 ERLTRNPLRILDSKDPNDKIIAEKAPIIDDYLTEEAASFFKAVTTGLDAAGVAWTRDPRL 258

Query: 278 SARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             RG++      F F T     + A      G  +     + G      +          
Sbjct: 259 -VRGLDYYRHTAFEFITDQ---LGAQGTVLAGGRYDGLSEALGGNLTPAIGWAAGIERLA 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             I  P         +I +    +  ++    I ++L   G        G  +  +   A
Sbjct: 315 MLIDEPKEDTMNVA-VIPLG---EEAKNPAISILSKLRHAGISADMSWRG-NMKRRMQKA 369

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +  G    VI+G + ++ ++  ++  +TG ++ ++L+++++       N 
Sbjct: 370 NGWGVRYAVILGEEELARNEATVRSMVTGEQQAIALDQIVDRILSELRNK 419


>gi|16272317|ref|NP_438530.1| histidyl-tRNA synthetase [Haemophilus influenzae Rd KW20]
 gi|260580568|ref|ZP_05848396.1| histidyl-tRNA synthetase [Haemophilus influenzae RdAW]
 gi|1174513|sp|P43823|SYH_HAEIN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|1573338|gb|AAC22027.1| histidyl-tRNA synthetase (hisS) [Haemophilus influenzae Rd KW20]
 gi|260092910|gb|EEW76845.1| histidyl-tRNA synthetase [Haemophilus influenzae RdAW]
          Length = 423

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 133/416 (31%), Gaps = 35/416 (8%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y     FR E   +    +  +  ++     +  
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWYI-GPMFRHERPQKGRYRQFHQVGVEVFGIANPE 138

Query: 167 PEGSKHSYNKMFVSYLRIFHR-------LGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +             L I          +G         S  +G   +H+ ++  +  E 
Sbjct: 139 IDAELIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLENHQDLMSDEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKR 276
            V      +D   P      D+   L   ++      + T       L D++    E   
Sbjct: 199 LVRNPLRILDTKNPELQKVLDNAPKLLDYLDDE----SRTHFEQLCSLLDAVGIQYEINP 254

Query: 277 VSARGIEV--GHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAA 327
              RG++     +F       G + ++     + G       H      + +G  R+V  
Sbjct: 255 KLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAMGLERLVLL 314

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           V E + +       D    ++     +        +  EK+ + L     +         
Sbjct: 315 VQEVNPNVPAKSAVDIYVVYQGEGATL-----AAFELAEKVRSELP--HLNTMLHCSSGN 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
              QF  AD  G  L +++G   V + +V +KH   G  ++ + L  +I+Y   +F
Sbjct: 368 FKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVNIIDYLQTQF 423


>gi|307250431|ref|ZP_07532378.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306857560|gb|EFM89669.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 423

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 63/415 (15%), Positives = 125/415 (30%), Gaps = 33/415 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               +   +R      G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIENKVRNVLAGYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P                Y N    +Y +   FR E   +    R R+F       F + 
Sbjct: 80  RPEGTAGCVRAAIERGWIYNNEQRLWY-MGPMFRHERPQKG---RYRQFHQAGVEVFGIP 135

Query: 167 PEGSKHSYNKMF----------VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                     +                  + +G         S  +    +H  ++  + 
Sbjct: 136 NPEIDAELIILTARLWKELGIDQHVSLQLNSIGSLEARANYRSALVKFLENHTALMSDEE 195

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDI-ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            E  V      +D    +     +D    L+ + +     +A    + +          K
Sbjct: 196 KERLVKNPLRILDTKNQALQEVLNDAPKLLDYLDDGSREHFAHLCHLLDAMGITYEVNPK 255

Query: 276 RVSARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAV 328
            V         +F       G++ ++     + G       H  Q   + +G  R+V  V
Sbjct: 256 LVRGLDYYNKTVFEWVTSALGSQGTVCGGGRYDGLVEQLGGHATQGIGFAMGLERLVLLV 315

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E + +       D    +      +           E+I + L ++G        G   
Sbjct: 316 QEVNKEINLPKAVDVYVVYSGEGATLN-----AFQMAERIRSELPQLGVMTHC--SGGNF 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
             QF  AD +   + +++G   V    V +K   +G  +  ++  ++I   + RF
Sbjct: 369 KKQFKRADKVEAQIALVIGESEVEQQTVVLKDLQSGAEQVTIAQADLIAELTKRF 423


>gi|165976603|ref|YP_001652196.1| histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|165876704|gb|ABY69752.1| histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 413

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 63/415 (15%), Positives = 125/415 (30%), Gaps = 33/415 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               +   +R      G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 11  LWQWIENKVRNVLAGYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 69

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P                Y N    +Y +   FR E   +    R R+F       F + 
Sbjct: 70  RPEGTAGCVRAAIERGWIYNNEQRLWY-MGPMFRHERPQKG---RYRQFHQAGVEVFGIP 125

Query: 167 PEGSKHSYNKMF----------VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                     +                  + +G         S  +    +H  ++  + 
Sbjct: 126 NPEIDAELIILTARLWKELGIDQHVSLQLNSIGSLEARANYRSALVKFLENHTALMSDEE 185

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDI-ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            E  V      +D    +     +D    L+ + +     +A    + +          K
Sbjct: 186 KERLVKNPLRILDTKNQALQEVLNDAPKLLDYLDDGSREHFAHLCHLLDAMGITYEVNPK 245

Query: 276 RVSARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAV 328
            V         +F       G++ ++     + G       H  Q   + +G  R+V  V
Sbjct: 246 LVRGLDYYNKTVFEWVTSALGSQGTVCGGGRYDGLVEQLGGHATQGIGFAMGLERLVLLV 305

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E + +       D    +      +           E+I + L ++G        G   
Sbjct: 306 QEVNKEINLPKAVDVYVVYSGEGATLN-----AFQMAERIRSELPQLGVMTHC--SGGNF 358

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
             QF  AD +   + +++G   V    V +K   +G  +  ++  ++I   + RF
Sbjct: 359 KKQFKRADKVEAQIALVIGESEVEQQTVVLKDLQSGAEQVTIAQADLIAELTKRF 413


>gi|312376083|gb|EFR23277.1| hypothetical protein AND_13183 [Anopheles darlingi]
          Length = 679

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 62/414 (14%), Positives = 124/414 (29%), Gaps = 76/414 (18%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R    +   LPF   QI   FR+E+ PR G++R REF M +   F
Sbjct: 241 FLRPETAQGIFVNFKRLLEFNQGRLPFAAAQIGNSFRNEISPRSGLIRVREFTMCEIEHF 300

Query: 164 DLTPEGSKHSYNKMFVS----YLRIFHRLGLKSIPMRA----ESGPIGGDLSHEFIVLAD 215
               E +   +  +  +    Y       G  + P+R      SG +       F+    
Sbjct: 301 CDPQEKNHPKFENVADTVMTLYSACNQMDGKSAQPVRIGDAVASGLVANQTLGYFMARIQ 360

Query: 216 TGETQV--------FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
               ++        F      +    + +    + ++    +E       +  D+     
Sbjct: 361 QFLHRIGILPERLRFRQHMGNEMAHYACDCWDAECLTSYGWIECVGCADRSAYDLTQHTQ 420

Query: 268 FDSLP---ENKRVSARGIE----------VGHIFYFGTKYSLPMSATF----KGADGKDH 310
              +    E K  + + IE          +G  F    K      A          GK+ 
Sbjct: 421 ATGVKLVAEKKLPAPKTIEVTEVVPNKAAIGKAFKKEAKGITDALAKLSLDDVSEIGKNL 480

Query: 311 YVQMGS------------------------------------YGIGAMRVVAAVIESSHD 334
                                                        G  R++ +++E S  
Sbjct: 481 ETNGEHTLVVNGADVKLSGDLIAVKKTTKTVHVEEITPSVIEPSFGIGRIMYSLLEHSFR 540

Query: 335 GKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +      S       +  +K      +++       +KI + L+ V      DD    I
Sbjct: 541 MRDGDEQRSYFSLPPVVAPLKCSVLPLSNNAEFTPFVKKISSALTSVDVSHKVDDSSGSI 600

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHR 441
           G ++A  D +  P  + +    + +   V ++ R +  +  ++L+EV       
Sbjct: 601 GRRYARTDEIAIPYGITIDFDTLKEPHTVTLRERDSMKQVRIALDEVAQTIRDL 654



 Score = 42.4 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+    R+        +E+    L   
Sbjct: 73  LLKRRFFYDQSFAIYGGITGQYDFGPMGCALKSNMINTWRQFFVLEEQMLEVDCSILTPE 132

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  D +   M +     + 
Sbjct: 133 PVLKASGHVDRFADLMTKDVKNGEC 157


>gi|309972472|gb|ADO95673.1| Histidyl-tRNA synthetase [Haemophilus influenzae R2846]
          Length = 423

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 67/412 (16%), Positives = 129/412 (31%), Gaps = 27/412 (6%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y     FR E   +    +  +  ++     +  
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWYI-GPMFRHERPQKGRYRQFHQVGVEVFGIANPE 138

Query: 167 PEGSKHSYNKMFVSYLRIFHR-------LGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +             L I          +G         S  +G   +H+ ++  +  E 
Sbjct: 139 IDAELIILTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLENHQDLMNDEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVS 278
            V      +D   P      D+   L   ++  +   +     + +          K V 
Sbjct: 199 LVRNPLRILDTKNPELQKVLDNAPKLLDYLDDESREHFEQLCSLLDAVGIQYEINPKLVR 258

Query: 279 ARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   +F       G + ++     + G       H      + +G  R+V  V E 
Sbjct: 259 GLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAMGLERLVLLVQEV 318

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           + +       D    ++     +        +  EK+ + L     +      G     Q
Sbjct: 319 NPNVPAKSAVDIYVVYQGEGAIL-----AAFELAEKVRSELP--HLNTMLHCSGGNFKKQ 371

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
           F  AD  G  L +++G   V + +V +KH   G  ++ + L  +I+Y   +F
Sbjct: 372 FKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVNIIDYLQTQF 423


>gi|312796094|ref|YP_004029016.1| histidyl-tRNA synthetase [Burkholderia rhizoxinica HKI 454]
 gi|312167869|emb|CBW74872.1| Histidyl-tRNA synthetase (EC 6.1.1.21) [Burkholderia rhizoxinica
           HKI 454]
          Length = 445

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 63/425 (14%), Positives = 112/425 (26%), Gaps = 28/425 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   + ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPRDAGLWEFFESTVKSMLRAYGYQNIRTPIVEHTSLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FVDSLNGEQLTMRPENTAAVVRAAIEHNLLYDGPKRLWYIGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G++                +E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIILMCQRLWDDLGLTGIRLEINSLGQAQERAAHRNELIAYLE 192

Query: 216 TG--ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                      +     P+   +T    +  + +   +        S  H E +   L  
Sbjct: 193 RHVELLDDDAKRRLYTNPLRVLDTKNPAMQDIATHAPKLIDFLGDASLAHFEGVQRLLSA 252

Query: 274 NKR------VSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           N           RG++     +F + T     + A    A G  +   +   G       
Sbjct: 253 NHIPFTINPRLVRGLDYYNLTVFEWVTD---KLGAQGTVAGGGRYDPLIEQLGGKPAPAC 309

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW---- 381
              +      + +     V       + +       R+    I  RL   G DV      
Sbjct: 310 GWALGVERILELLREDQLVPSDDGCDVYVVHQGDAARERAFVIAERLRDTGLDVILHCSA 369

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL------TGIREDMSLEEVI 435
           D       SQ   AD  G    VI+G   V   +V IK          G+++ +  E + 
Sbjct: 370 DGAPASFKSQMKRADASGAAYAVILGDDEVQRDEVSIKALRGDPAGADGVQQRVPAEHLT 429

Query: 436 NYASH 440
            +   
Sbjct: 430 EFLID 434


>gi|296422831|ref|XP_002840962.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637189|emb|CAZ85153.1| unnamed protein product [Tuber melanosporum]
          Length = 236

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 1/81 (1%)

Query: 365 CEKIYARLSKVGCDVFWDDMG-EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            E I   LS+ G  V  D       G +F   +L G P+++  G K +   +V    R T
Sbjct: 43  VEDIATTLSQAGIRVKADTRETYSPGYKFNDWELKGVPVRLEFGPKDMEKKQVLSARRDT 102

Query: 424 GIREDMSLEEVINYASHRFSN 444
           G++  + L  +          
Sbjct: 103 GVKVGIPLSGLAEKVQTLLDT 123


>gi|297569983|ref|YP_003691327.1| histidyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925898|gb|ADH86708.1| histidyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
          Length = 421

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 63/406 (15%), Positives = 120/406 (29%), Gaps = 16/406 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP        V    RE   R G  E+ VP L+   L+  S     D   KEM  
Sbjct: 6   GFKDILPDEAVLWQRVERTAREVFRRYGFDEIKVPILEKTGLFARSIGEATDIVEKEMYT 65

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P     +   F  H    R      + +   FR E   +  + +  + 
Sbjct: 66  FTDRNGESITMRPEGTAPVLRAFIEHSLHLRRPINRLFTVGPMFRHERPQKGRLRQFHQL 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            ++   +     +    +     +  L++   L L S+   A   P       EF+    
Sbjct: 126 SVEALGTDHPRLDAEVVAMAHQLLVELQLQAELQLNSLGCPAC-RPAYRTRLVEFLRGHQ 184

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                  C +     P+   +    +   LN+             + H  ++   L   +
Sbjct: 185 EQLCDD-CRRRVESNPLRVLDCKSANCRRLNADAPAILDSLCTPCEEHLAQVRRDLDALQ 243

Query: 276 R------VSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                     RG++      F   T      SA   G        Q+G    G       
Sbjct: 244 IPYTMNPFMVRGLDYYTRTTFELLTDALGAQSAVGAGGRYDGLIKQLG----GPDLPGIG 299

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                     ++   +        + +    +        +  +  + G     D  G  
Sbjct: 300 FATGMERLVLLLQEQAATAADGPDLFLACLGEPAAAYGFTLLQQCRQAGLSAQMDIQGRG 359

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + SQ   AD L     +I+G   ++  +  ++   +     ++L++
Sbjct: 360 LKSQMKQADRLNARQVLIIGEDELNAGQAVLRDLNSKEEHQLNLDD 405


>gi|126695987|ref|YP_001090873.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
 gi|166228592|sp|A3PBZ7|SYH_PROM0 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|126543030|gb|ABO17272.1| Histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
          Length = 426

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 57/431 (13%), Positives = 120/431 (27%), Gaps = 40/431 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G     P       NV  I+ E+ +R    E+  P L+  +L++       D   KEM  
Sbjct: 9   GTVDLFPDQLIKWQNVERILLEQLSRASIKEIRTPILEMTELFIRGIGEGTDVVSKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +++    P     +      +  S   L   +Y +   FR E        R R+F
Sbjct: 69  FLDRGERSCTLRPEGTASVARALIQNGISSNPLQKLWY-MGPMFRYERPQAG---RQRQF 124

Query: 156 LMKD-AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF--IV 212
                 +    +           +    ++  +     I    ++     +    F   +
Sbjct: 125 HQLGVEFIGHDSVRSDVEIIALAWDILSKLGIKELNLEINTLGDTND-RSNFQKSFLKWL 183

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF---- 268
            A+     +         P+   ++       +     + +   +  S     +L     
Sbjct: 184 QANKDSLDLDSQNRISKNPLRILDSKNIQTKKVLENAPRLSNFLSEKSHSRYLELKRQLE 243

Query: 269 ---------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                     +L                   G++ ++     +     +       + G 
Sbjct: 244 VLNIPYVENFNLVRGLDYYTHTAFEITSGALGSQATVCGGGRYDDLIKQMGGPNTPAIGF 303

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                   ++              +   + + I I     +       +  +L      V
Sbjct: 304 AIGLERLILLA----------GKELEIPRNTDIYIINKGLIAESFAMDLSRKLRNYDLLV 353

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY-- 437
             D  G     QF  A+ L     +++G     +   E   RL G   + + EEVI++  
Sbjct: 354 ELDLSGASFSKQFKKANKLKSKSIIVIGDDEAVNG--EFIIRLFGQSGNGNKEEVISFEN 411

Query: 438 ---ASHRFSNN 445
                +  +NN
Sbjct: 412 DIKLENWINNN 422


>gi|78223120|ref|YP_384867.1| histidyl-tRNA synthetase [Geobacter metallireducens GS-15]
 gi|123742840|sp|Q39UD2|SYH_GEOMG RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|78194375|gb|ABB32142.1| histidyl-tRNA synthetase [Geobacter metallireducens GS-15]
          Length = 413

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 66/403 (16%), Positives = 119/403 (29%), Gaps = 37/403 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
             ++ A  R      G  E+ VP L+  +L+  S     D   KEM    D+ + A+   
Sbjct: 19  WQHIEATARRVFGLYGYAEIRVPILEKTELFCRSIGDTTDIVEKEMYSFVDKGENAVTMR 78

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  H    ++     Y +   FR E   +    R R+F    A    +T 
Sbjct: 79  PEGTASVMRAYIEHKLYAQDPVAKLYYMGPMFRYERPQKG---RYRQFHQIGAEVTGVTD 135

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCSK 225
                    M       F  LGL    ++  S   P    +  E +           C  
Sbjct: 136 PKVDAQVLTML---CHFFAELGLTEPTLQINSLGCPECRPVYREALKSFLRERLDRLCDD 192

Query: 226 DFMDFPIPSENT-----------DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
               +                    D    L+ +       +AAT              N
Sbjct: 193 CKRRYETNPLRALDCKSAHCKEATADAPAMLDHLCAGCDDHFAATRRHLERAGTPYSINN 252

Query: 275 KRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           + V          F       G + ++     + G         +   G        A++
Sbjct: 253 RMVRGLDYYTRTTFELVTGLLGAQSAVAAGGRYDGLIADLDGPAVPGIGFAMGVERVALL 312

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
               +             +   + I A     +D   ++   L ++G  V  D  G+ + 
Sbjct: 313 LGQQEFA-----------RRPDLFIAALGTEAQDEAFRLMCGLQRLGVSVEMDYEGKSLK 361

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           SQ   +D       +I+GS  ++  +  +K   TG + D+ L+
Sbjct: 362 SQMRRSDKFNSRFTLIIGSDEMASGRATLKAMDTGTQSDVLLD 404


>gi|262340835|ref|YP_003283690.1| glycine-tRNA ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272172|gb|ACY40080.1| glycine-tRNA ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 478

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 55/435 (12%), Positives = 124/435 (28%), Gaps = 38/435 (8%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           +Y + P G +  +N+     +         + +    L  +++W  SG  + + + ++  
Sbjct: 35  VYDYGPYGIELKNNIKEFWWKSMTFLHENIVGIDSSILMRSEIWDASGHVNEFNELLIDN 94

Query: 97  AD---RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
            D   R    ++     E+  +   R        L  +  +        L     +  S 
Sbjct: 95  KDSKKRYRPDILIKEHVEKHFSKNLRKKENILFRLSKSLKKKDFLDLKTLVDELNIRDSI 154

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-AESGPIGGDLSHEFIV 212
                              +       YLR     G+        +S  +        I 
Sbjct: 155 SKTKNWTKIRHFNMMFQIKN-ENKKDLYLRPETAQGIFCNFNNVIKSNRMKIPFGIAQIG 213

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
            +   E         M      E   F          E W            ++    L 
Sbjct: 214 KSFRNEIFARKFIFRMREFEQMEMQFFIFPEEEKKWYEYWKDIRFKWHLFLGDQKNYKLR 273

Query: 273 ENKRVSARG-----IEVGHIFYFGTKYSLPMSATF--------------KGADGKDHYVQ 313
           ++  ++        IE    F F     +     F                   K++   
Sbjct: 274 DHDHLAHYASAGSDIEYNFPFGFQEVEGIHSRRDFDLKKHEYFSKKKLRVFESRKNYIPY 333

Query: 314 MGSYGIGAMRVVAAV---------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
           +    +G  R+  A+         +E+ +    +  P  ++P K ++  +   D    + 
Sbjct: 334 VIETSLGLDRLFLAIFTSSLKEEKLENGNTRIVLKLPPYLSPIKGAIFPLVKKD-GLPET 392

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +KI+             D  E IG  +   D +G PL   V  + +  + V +++R + 
Sbjct: 393 AKKIFNDFKIHHK--LIYDEKESIGKLYRRQDAIGTPLCFTVDYETIETNTVTMRYRDSM 450

Query: 425 IREDMSLEEVINYAS 439
            ++ + ++++     
Sbjct: 451 QQKRVHIKDICRIIK 465


>gi|283856488|ref|YP_163243.2| histidyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|283775492|gb|AAV90132.2| histidyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 419

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/410 (14%), Positives = 127/410 (30%), Gaps = 27/410 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            ++V     E +   G     +P  +S  ++  S     D   KEM    DR+ + +   
Sbjct: 23  FNHVVNKFDEIRKLYGFKRAEIPVFESTAVFARSLGETTDVVSKEMYSFPDRSGEQLTLR 82

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +T  + +      + P         FR E   +    R R+F   DA       
Sbjct: 83  PEFTAGLTRAYLTSGWQQYS-PCKIATHGPVFRYERPQKG---RYRQFHQIDAEVIGAAE 138

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMR-----AESGPIGGDLSHEFIVLADT-----G 217
             +      +    L         ++ +      A        L   F    D+      
Sbjct: 139 PEADVELLSLADQLLESLGIKQHVTLHLNTLGDSASREAWRAALIEYFQGHFDSLSQESQ 198

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E         +D   P++    +    ++  + +  A +        +    +   + R+
Sbjct: 199 ERLTRNPLRILDSKDPNDKIIAEKAPIIDDYLTEEAASFFKAVTTGLDAAGVAWTRDPRL 258

Query: 278 SARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             RG++      F F T     + A      G  +     + G      +          
Sbjct: 259 -VRGLDYYRHTAFEFITDQ---LGAQGTVLAGGRYDGLSEALGGNLTPAIGWAAGIERLA 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             I  P   A     +I +    +  ++    I ++L   G        G  +  +   A
Sbjct: 315 MLIDEPKEDAMNVA-VIPLG---EEAKNPAISILSKLRHAGISADMSWRG-NMKRRMQKA 369

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +  G    VI+G + ++ ++  ++  +TG ++ ++L+++++       N 
Sbjct: 370 NGWGVRYAVILGEEELARNEATVRSMVTGEQQAIALDQIVDRILSELRNK 419


>gi|270264728|ref|ZP_06192993.1| histidyl-tRNA synthetase [Serratia odorifera 4Rx13]
 gi|270041411|gb|EFA14510.1| histidyl-tRNA synthetase [Serratia odorifera 4Rx13]
          Length = 424

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/419 (12%), Positives = 117/419 (27%), Gaps = 19/419 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPEDTALWQRIEGTLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF---RDELRPRFGVMRS 152
             DRN +++   P            H   Y      +Y   +       + R R      
Sbjct: 70  FEDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRYERPQKGRYRQFNQLG 129

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            E         D         + K            + +G            +     H+
Sbjct: 130 VEVFGLQGPDIDAELILLTARWWKALGISEHVNLELNSIGSLEARANYRDALVAFLEQHK 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D            +D   P      +D   L   + E+  A +    ++ ++   
Sbjct: 190 DTLDEDCKRRMYSNPLRVLDSKNPEVQALLNDAPRLSEYLDEESKAHFDGLCELLSQAGI 249

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 + V         +F       G + ++     + G    +      +  +G   
Sbjct: 250 PYTINERLVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDGLV--EQLGGRATPAVGFAM 307

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  ++    +        +     +      A         E +     ++     +  
Sbjct: 308 GLERLVLLVQEVNPDFKAPATIDVYVISSGAGAQS-AAMQLAENVRDAAPQLKLMTNY-- 364

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            G     Q   AD  G  + +I+G   V+  +V +K   +G +E ++  EV    +   
Sbjct: 365 GGGNFKKQITRADKWGARVALILGENEVAAQQVVVKDLRSGEQETLAQSEVAVRLATML 423


>gi|171911240|ref|ZP_02926710.1| glycyl-tRNA synthetase [Verrucomicrobium spinosum DSM 4136]
          Length = 587

 Score = 87.5 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 61/394 (15%), Positives = 118/394 (29%), Gaps = 42/394 (10%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +   +   A   D A +   T + +          S   +PF   QI   FR+E+ P+  
Sbjct: 197 FKTYVGPTATEKDVAYLRPETAQAIFAQFRNVVDSSRVKVPFGICQIGKAFRNEVTPKNF 256

Query: 149 VMRSREFLMKDAYSFDLTPEGSK-------------HSYNKMFVSYLRIFHRLGLKSIPM 195
             RSREF   +   F    E  +                         ++HR  +     
Sbjct: 257 TFRSREFEQMELEFFIKPDEAVEILAGSVVTWSEGADLSTPQPNWGWDMWHRYWVSQRVE 316

Query: 196 RAESGPIGGDLSHEFIV-LADTGETQVFCSKDFMDFPIPSENTD------FDDIISLNSI 248
              S  +G D+   +     D       C      FP  +E  +        D+      
Sbjct: 317 YYNSIGLGTDVLDYYWQGPDDLAHYARACVDILFKFPFGTEELEGIAARGDFDLSQHQKH 376

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +    +     +   KL D   E         E           +  + A F      
Sbjct: 377 SGKPQEFFDDELKMAAAKLTDEQKEALIQKRIAFEAAKTKGTPLTEAE-VRAWFDRLFKG 435

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKG-------------IIWPDSVAPFKISLINIK 355
            +   +     G  R+  AV+  +   +              +     +AP K+ +  + 
Sbjct: 436 FYVPHVIEPSAGLDRLALAVLAQAFTEEEKADVNGKTEVRTIMRLHPRIAPIKVGVFPLL 495

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV-SDS 414
            +         ++Y  L K   + F+D+    IG ++A  D  G P  V +  + +    
Sbjct: 496 KNKPELVGKAREVYDLLKKH-MNCFYDETAA-IGRRYARQDEAGTPFGVTIDFETLGEKG 553

Query: 415 -----KVEIKHRLTGIREDMSLEEVINYASHRFS 443
                 V ++ R +  +  + + E++ +   R +
Sbjct: 554 DELKDTVTVRERDSNAQHRVKISELLGWLLQRLA 587



 Score = 47.0 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 28 RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQ--NRTGAIEMSVPTLQSADL 79
          R G I+Q S       G + + PLG +   N+           R   + +    +    +
Sbjct: 20 RRGFIYQSSEIYGGIGGFWDYGPLGAELKRNLRDTWWRAMTREREDVVGLDATIIMHPQI 79

Query: 80 WVESGRYDSYGKEMLRL 96
          W  SG  D++   M   
Sbjct: 80 WKASGHVDTFTDPMADC 96


>gi|46396578|sp|P60913|SYH_BDEBA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
          Length = 416

 Score = 87.1 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 71/415 (17%), Positives = 130/415 (31%), Gaps = 33/415 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP        V     E+    G  E+  P  + +D++  +     D   KE   
Sbjct: 10  GTRDLLPEDSILFRFVEESAYEKALLYGYGEIETPIFEFSDVFHRTLGETSDVVNKETYD 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  +++   P     +   F S     +NLP  FY     FR E   +    R R+F
Sbjct: 70  FTDRGGESLTLRPEGTAGVARAFISEGM-MQNLPLKFYYSGPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDL-TPEGSKHSYNKMFVSYLRI---FHRLGLKSIPMRAESGPIGGD------ 205
               A      +P     + +  +    +I          +    AES     D      
Sbjct: 126 YQLGAECLGYESPLADVETISLAWDLLKKIGISDDCTLEINTLGDAESRAAYRDTLVNYF 185

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            +H+  +  D+           +D     +     +   L   + Q +  +        E
Sbjct: 186 TAHKDQLSEDSKMRLEKNPLRILDSKDEGDKKLNANAPKLEQSLNQTSQDFFKKVIAGIE 245

Query: 266 KL------FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           KL       D L          +        G + ++     + G        +    G 
Sbjct: 246 KLGIPYKINDHLVRGLDYYCHTVFEFTTTKLGAQGTVLAGGRYDGLIETMGGPKTPGVGW 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
            A            D    + P  +A  K  +I +   D+   D   K+   +   G   
Sbjct: 306 AAG----------IDRLADLTPKELATKKEVIIAVVGADEQGEDESVKVAHEMRVRGFKT 355

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
                G ++G +   A+ LG    +I+G   V++  V +K+  TG +++++  E+
Sbjct: 356 ENFLSG-KMGKKMQKANKLGAHYALILGGNEVTNKTVTVKNFTTGEQKEITRAEL 409


>gi|56461133|ref|YP_156414.1| histidyl-tRNA synthetase [Idiomarina loihiensis L2TR]
 gi|81678386|sp|Q5QYB0|SYH_IDILO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|56180143|gb|AAV82865.1| Histidyl-tRNA synthetase [Idiomarina loihiensis L2TR]
          Length = 415

 Score = 87.1 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 61/426 (14%), Positives = 121/426 (28%), Gaps = 63/426 (14%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYG 107
              V A+IR      G  E+ +P L+S  L+  S G   D   KEM    DRN +++   
Sbjct: 12  WQQVEAVIRRVAASYGYSEIRMPVLESTQLFKRSIGEVTDIVEKEMYTFDDRNGESVTLR 71

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P            H   Y  +   +Y +   FR E   +    +  +F ++         
Sbjct: 72  PEGTASCVRAGNQHGLLYNQIQRLWY-MGPMFRYERPQKGRYRQFHQFGIETFGLESADA 130

Query: 168 ------------------------------EGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
                                           ++ +Y     +YL  +          R 
Sbjct: 131 DAEVILLSARLWREFGLADQVELQLNSLGSNEARANYRDALKAYLSDYESELDDDSKRRL 190

Query: 198 ESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           ES P  I      +   + +   +                    +      ++ E+    
Sbjct: 191 ESNPLRILDSKDEKTQKILEGAPSLSEYWDAESKEHFEQLTARLEAAGISYTLNERLVRG 250

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
               +    E +  +L     V A G   G +   G K +                    
Sbjct: 251 LDYYNRTVFEWVTTALGAQGTVCAGGRYDGLVEQLGGKAT-----------------PAV 293

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSK 374
            + +G  R+V  +       +              L+ +    +       E++   L +
Sbjct: 294 GFAMGMERLVLLL-------QEQGKLTPRRVVDAYLMPLGEEAELNAPRIAEQLRNELPE 346

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMSLEE 433
           +         G  +  Q   AD  G  + +I+G+  ++   V +K   T   ++ +  + 
Sbjct: 347 LRLVSHC--GGGSMKKQMKKADKSGAQVALIIGADEIAQQLVTVKPLRTAEEQQTLGWQA 404

Query: 434 VINYAS 439
           +I +  
Sbjct: 405 LIEFLQ 410


>gi|325281010|ref|YP_004253552.1| glycyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
 gi|324312819|gb|ADY33372.1| glycyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
          Length = 517

 Score = 87.1 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/353 (14%), Positives = 101/353 (28%), Gaps = 45/353 (12%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   A+   K  +   T + +  +           +PF   QI   FR+E+  R  
Sbjct: 198 FATEMGSTAEGASKIYLRPETAQGIFVNFLNVQKTGRMKVPFGIAQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      + K   + +R    LG              G+ ++
Sbjct: 258 IFRMREFEQMEMQFFVR-PGSELEWFKKWKTTRMRWHQLLGF-------------GEENY 303

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            F             +     FP                        +     +H+   F
Sbjct: 304 RFHDHEKLAHYANAATDIEFKFPF----------------------GFKEVEGIHSRTDF 341

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D       +S      G    +           +                  A       
Sbjct: 342 D-------LSQHQQYSGKKIQYFDTELNESYVPYVIETSIGVDRMFLQIMSAAYCEEDLS 394

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +   D + ++   +        I          +  ++I   L K   +  +D+    I
Sbjct: 395 KDGKQDSRVVLRLPAALAPVKMAIMPLVKKDGLPEKAQEIMN-LLKYDFNCQYDEKD-SI 452

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G ++   D +G P  + V  + + D  V I+ R T  +E ++++++      +
Sbjct: 453 GKRYRRQDAIGTPFCITVDHQTLEDHAVTIRDRDTMQQERVAIDQLFGILKEK 505



 Score = 37.0 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 39 IYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
          +Y +   G +  +N+     E   R     + +         +W  SG  D++   ++  
Sbjct: 33 VYDYGQNGVELKNNIKRYWWESMVRLHENIVGIDSAIFMHPTIWKASGHVDAFNDPLIDN 92

Query: 97 AD 98
           D
Sbjct: 93 KD 94


>gi|16803560|ref|NP_465045.1| histidyl-tRNA synthetase [Listeria monocytogenes EGD-e]
 gi|224501540|ref|ZP_03669847.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL R2-561]
 gi|254829721|ref|ZP_05234376.1| histidyl-tRNA synthetase [Listeria monocytogenes 10403S]
 gi|32130129|sp|Q8Y708|SYH_LISMO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|16410949|emb|CAC99598.1| histidyl-tRNA synthetase [Listeria monocytogenes EGD-e]
          Length = 425

 Score = 87.1 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 57/422 (13%), Positives = 113/422 (26%), Gaps = 30/422 (7%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKE 92
           LP G +            +    +         E+  P  +  +L+        D   KE
Sbjct: 5   LPRGTRDILPEEVSKWHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKE 64

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMR 151
           M    D+  +++   P     +   F  H      + P   Y  +  FR E        R
Sbjct: 65  MYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGG---R 121

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF- 210
            R+F      +                   +  F ++GL +I +   S            
Sbjct: 122 QRQFTQMGIEALGSDDPSIDVEV---ISLAMEFFRKIGLTNIKLVINSLGDKESRLKHRE 178

Query: 211 ----IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                      E    C       P+   +   D    L              S  + E 
Sbjct: 179 ALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFEN 238

Query: 267 LFDSLP------ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           + + L       E      RG++      F   +      + T     G+ H +     G
Sbjct: 239 VKNYLNALEIPFEIDPTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGG 298

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                +   +               +   K   + +             +  +L + G  
Sbjct: 299 PDTPGMGFGIGVERILLALEKADIEIPAKKPLEVYVITAQPEAELKGVTLVNKLRQNGIS 358

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              D +  +  +Q   A+       +I+G + +     ++K+  TG +E +S   ++   
Sbjct: 359 AEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEAVSETTILEKL 418

Query: 439 SH 440
           S+
Sbjct: 419 SN 420


>gi|298705215|emb|CBJ28646.1| Glycyl-tRNA Synthetase (C-terminal region) [Ectocarpus siliculosus]
          Length = 154

 Score = 87.1 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 11/151 (7%)

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI--------IWPDSVAPFKISLIN 353
           F       +   +    +G  R+  AV+ S++    +         +   +AP K+++  
Sbjct: 4   FDERSKTKYVPHVIEPSLGVDRLFLAVMVSAYHEDEVGGDKRTLLRFHPRMAPIKVAVFP 63

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS- 412
           +  +     +    IY  +     + FWD  G  IG ++   D  G P  V V  + +  
Sbjct: 64  LVKNKPELMEKARGIYETIRLRH-NAFWDVSGA-IGRRYRRMDEAGTPFCVTVDFETLEG 121

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D  V ++ R +  +  +  +E++ + S   +
Sbjct: 122 DGTVTVRERDSTEQTRVPADELLGFLSKAIN 152


>gi|67588167|ref|XP_665340.1| glycyl-tRNA synthetase [Cryptosporidium hominis TU502]
 gi|54655979|gb|EAL35110.1| glycyl-tRNA synthetase [Cryptosporidium hominis]
          Length = 593

 Score = 87.1 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 21/235 (8%)

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             +A+ G+       +  +  +    +  +       I+ +       T  V  E+    
Sbjct: 357 QEIANKGDISFQEKLNQSNKALLKYKSCENGKEYQWEILSEMAKFEFQTKKVTEEQFTPG 416

Query: 271 LPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           + E      R I     H F      S     +    +  +           ++  + A 
Sbjct: 417 VIEPSFGIGRIIYCLLEHSFKIREDLSEVQDQSTGNKNTNNSPDNEMQRSYLSLPALIA- 475

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                            P K S++ I ++  +  D    ++      G     D     I
Sbjct: 476 -----------------PVKCSILPISSN-AIFNDLINLLHKSFINHGISCKVDTSSASI 517

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++A  D +G P  + +  + V D  V ++ R +  +  +S  EV +  S   +
Sbjct: 518 GRRYARTDEIGIPFGITIDFQSVKDDTVTLRERDSMKQVRISSSEVPSVISKIIN 572


>gi|296117805|ref|ZP_06836388.1| histidine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969036|gb|EFG82278.1| histidine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 427

 Score = 87.1 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 61/396 (15%), Positives = 119/396 (30%), Gaps = 26/396 (6%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   + +P  +   L+        D   KEM   ADR ++++   P     +      H
Sbjct: 41  AGYSHIELPVFEDTTLFARGVGESTDVVSKEMYTFADRGERSVTLRPEGTAGVMRAVIQH 100

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                 LP         FR E RP+ G  R  +  +         P             Y
Sbjct: 101 NLDRGQLPVKLAYYGPFFRYE-RPQAGRYRQLQ-QVGVEAIGVDDPALDAEVVALADRGY 158

Query: 182 LRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGET-----QVFCSKDFMDFPIPS 234
             +        +         P   +   EF+   D  E      ++   +   D     
Sbjct: 159 RALGLSEFRLEMTSLGCGNCRPAYREKLQEFLFSLDLDEETRHRAEINPLRVLDDKRPEM 218

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY----- 289
           +    D  + L+ + E     +     + N+         + V          F      
Sbjct: 219 QEATADAPLMLDYLCEDCREHFETVKSLLNDMQVPFEINPRMVRGLDYYTKTTFEFVHDG 278

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
            G +  +     + G   +     +   G G      AV+    +GK I   +  A    
Sbjct: 279 LGAQSGIGGGGRYDGLMAQLGGQDLSGIGFGLGVDR-AVLALEAEGKSIPVVEERAAVYG 337

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVG 407
             +  +A  ++       I   L   G      + D G + G+    AD  G    +++G
Sbjct: 338 VALGGEAKKKMV-----SIVNDLRLAGISTDMSYGDRGLK-GAM-KGADRAGARFALVLG 390

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + + +  V +K  +   +ED++L+ ++   + +  
Sbjct: 391 DQELENGTVALKDLVAHEQEDIALDNIVETLAKKLQ 426


>gi|167619822|ref|ZP_02388453.1| histidyl-tRNA synthetase [Burkholderia thailandensis Bt4]
          Length = 446

 Score = 87.1 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 113/426 (26%), Gaps = 29/426 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 TGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               ++     +     P+   +T    +  +     +        S  H E L   L  
Sbjct: 193 QHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSRAHFEGLQRLLKA 252

Query: 274 NKR------VSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           N           RG++     +F + T           G        Q+G     A    
Sbjct: 253 NNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWA 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW---- 381
             +       K            + +++        R+    +  RL   G DV      
Sbjct: 313 MGIERILELLKEEHLVPEQEGVDVYVVHQG---DAAREQAFIVAERLRDTGLDVILHCSA 369

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGI------REDMSLEEV 434
           D  G    SQ   AD  G    VI G   V++    +K  R TG       ++ + +E +
Sbjct: 370 DGAGASFKSQMKRADASGAAFAVIFGEDEVTNGTASVKPLRGTGDDGEKSVQQSVPVESL 429

Query: 435 INYASH 440
             +  +
Sbjct: 430 TEFLIN 435


>gi|296110401|ref|YP_003620782.1| histidine--tRNA ligase [Leuconostoc kimchii IMSNU 11154]
 gi|295831932|gb|ADG39813.1| histidine--tRNA ligase [Leuconostoc kimchii IMSNU 11154]
          Length = 433

 Score = 87.1 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 115/421 (27%), Gaps = 17/421 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP       +V +  R         E+  P  ++ +++  S     D   KEM  
Sbjct: 11  GTADLLPDQTVKWQHVESTARLLFGDYNFKEVRTPIFENFEIFSRSAGDTSDVVTKEMYD 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   +  +         P+  + I   FR E        +  
Sbjct: 71  FHDKGDRHIALRPEGTAGVVRAYVENKLYGPEFDKPYKTFYIGPMFRYERPQAGRFRQFH 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFI 211
           +  ++   S   +P             +  +  +    ++    +  S         +++
Sbjct: 131 QIGVEAFGS--KSPALDVEIIAMAIDFFKTLGLQNLKVAVNTLGDQRSRASYRQALIDYL 188

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                 E            P+   ++         +         +  +  H +++   L
Sbjct: 189 KPH-FDELSTDSQTRLEQNPLRVLDSKDARDQVFVADAPSILDYLSPEATEHWQQVQTIL 247

Query: 272 P------ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                  E      RG++     IF   T       A      G+   +     G     
Sbjct: 248 KALDIDFEIDATMVRGLDYYNDTIFEIMTVDDHLKGAATIAGGGRYSGLVSEFGGPETPG 307

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           V   +              +          +    +       +I   +   G     D 
Sbjct: 308 VGFGIGIERLISLLSTQQVAPIDDHGFDFYVVNIGEKTDVVATQIAQAIRSFGYVTERDY 367

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G    +QF  AD       V +G + +SD    IK+  TG ++ + L E+         
Sbjct: 368 LGRSAKAQFKTADRHRAKYVVTIGEQELSDQVANIKNMTTGQQKTVKLAELYTNLPMLID 427

Query: 444 N 444
           +
Sbjct: 428 S 428


>gi|315225631|ref|ZP_07867440.1| glycyl-tRNA synthetase beta subunit [Capnocytophaga ochracea F0287]
 gi|314944448|gb|EFS96488.1| glycyl-tRNA synthetase beta subunit [Capnocytophaga ochracea F0287]
          Length = 516

 Score = 87.1 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 20/255 (7%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       G  Q +             +    +        E+      A 
Sbjct: 260 FRMREFEQMEMQFFIKPGTQQQWYEYWKETRLKWHLSLGMGEENYRYHPHEKLAHYADAA 319

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +      E + + +R       F  G   KYS      F   + K +   +   
Sbjct: 320 CDI-EFRFPFGFKELEGIHSR-----TNFDLGNHEKYSGKKMQYFDPEENKSYTPYVLET 373

Query: 318 GIGAMRVVAAV---------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            IG  R+  AV         +E       +  P  +AP K++++ +   D    +  E+I
Sbjct: 374 SIGLDRMFLAVFSNSLQEEALEGGDTRTVLRLPFVLAPTKVAVLPLLKKD-GLPEVAEQI 432

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L     +V +D+    +G ++   D +G P  V V  + + D+ V ++HR T  +  
Sbjct: 433 VNELK-YDFNVAYDEKDA-VGRRYRRQDAVGTPFCVTVDHQTLEDNTVTLRHRDTMEQVR 490

Query: 429 MSLEEVINYASHRFS 443
           +++ E+ N  +    
Sbjct: 491 IAIPELRNTIAKEVD 505


>gi|303254927|ref|ZP_07341011.1| histidyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|303259625|ref|ZP_07345601.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|303262070|ref|ZP_07348015.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|303264527|ref|ZP_07350446.1| histidyl-tRNA synthetase [Streptococcus pneumoniae BS397]
 gi|303267199|ref|ZP_07353065.1| histidyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|301802793|emb|CBW35567.1| histidyl-tRNA synthetase [Streptococcus pneumoniae INV200]
 gi|302598109|gb|EFL65171.1| histidyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|302636710|gb|EFL67200.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|302639177|gb|EFL69636.1| histidyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|302643263|gb|EFL73544.1| histidyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|302645897|gb|EFL76125.1| histidyl-tRNA synthetase [Streptococcus pneumoniae BS397]
          Length = 429

 Score = 87.1 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 118/409 (28%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S L+ + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     + LE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESRQVTVKNNQTREEVQVLLETISQNFSEIFEK 423


>gi|148825348|ref|YP_001290101.1| histidyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|166227971|sp|A5UAB7|SYH_HAEIE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|148715508|gb|ABQ97718.1| histidyl-tRNA synthetase [Haemophilus influenzae PittEE]
          Length = 423

 Score = 87.1 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 66/411 (16%), Positives = 129/411 (31%), Gaps = 25/411 (6%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            P            H   Y N    +Y     + +   + R R       E         
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWYIGPMFRHERPQKGRYRQFHQAGVEVFGIANPKI 139

Query: 164 DLTPEG--SKHSYNKMFVSYLRIF-HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           D        +         Y+ +  + +G         S  +G   +H+ ++  +  +  
Sbjct: 140 DAELIMLTYRLWKALGIDQYVTLQLNSIGSLEARANYRSALVGFLENHQDLMSDEEKDRL 199

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVSA 279
           V      +D   P      D+   L   ++  +   +     + +          K V  
Sbjct: 200 VKNPLRILDTKNPELQKVLDNAPKLLDYLDDESREHFEQLCSLLDAVGIQYEINPKLVRG 259

Query: 280 RGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  +F       G + ++     + G       H      + +G  R+V  V E +
Sbjct: 260 LDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAMGLERLVLLVQEVN 319

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
            +       D    ++     +        +  EK+ + L     +      G     QF
Sbjct: 320 PNVPVKSAVDIYVVYQGEGTTL-----AAFELAEKVRSELP--HLNTMLHCSGGNFKKQF 372

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
             AD  G  L +++G   V + +V +KH   G  ++ + L  +I+Y   +F
Sbjct: 373 KRADKSGATLALVIGESEVQNKQVVVKHLQGGADQQTLDLVNIIDYIQTQF 423


>gi|289450179|ref|YP_003475044.1| histidine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184726|gb|ADC91151.1| histidine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 419

 Score = 87.1 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 130/408 (31%), Gaps = 39/408 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  +  E   +    E+ +PT ++ +++     G  D   KEM    D++D++M   
Sbjct: 20  WQYVERVFAEVCRQFAFSEIRIPTFEATEVFARGVGGSTDIVRKEMYTFLDKSDRSMTLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F     S    P   Y     FR E   +    R REF    A +F    
Sbjct: 80  PEGTAGVVRSFIEQGMSSLPYPVRLYYNLNLFRYERVAKG---RYREFHQLGAEAFGAAG 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHEFIVLADTGETQV 221
                   +M       F RLGL S  +   S            +  E++   +T E   
Sbjct: 137 AMMD---IEMIALLHSFFKRLGLHSTALHINSIGTPACRSEYNKVLREYLRPYET-ELCG 192

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PE 273
            C +     P+   +   D    +     +        S  H   L D L         +
Sbjct: 193 DCCERLAKNPLRVLDCKVDHCHEIARNAPRLLDYLDTESAEHFAALKDGLTALGIPFVID 252

Query: 274 NKRVSARGIEVGHIFYF-----GTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVA 326
              V         +F F     GT+ ++     +     +     V    + +G  R++ 
Sbjct: 253 TDIVRGLDYYTKTVFEFVSENVGTQGTICGGGRYDCLVEEMGGTAVPAVGFALGEERLLM 312

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +     D           P  I +  +    +  +     +  +L + G     D  G 
Sbjct: 313 EMAAQQLDI------PRPTPTDIYVAPMG---ENAQWKAMCLINQLREGGIVAQTDLCGR 363

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            + +Q   AD +G    +++G   ++    E+K+   G +  +  E++
Sbjct: 364 TLKAQMKFADKIGARFVLVLGENELTSGYAELKNMQDGSKTSIHWEDL 411


>gi|21673075|ref|NP_661140.1| histidyl-tRNA synthetase [Chlorobium tepidum TLS]
 gi|32130115|sp|Q8KFT6|SYH_CHLTE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|21646145|gb|AAM71482.1| histidyl-tRNA synthetase [Chlorobium tepidum TLS]
          Length = 430

 Score = 87.1 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/409 (11%), Positives = 101/409 (24%), Gaps = 26/409 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRL-ADRNDKAMIY 106
              V  ++       G  E+  P  +  +L+        D  GKEM     D N +++  
Sbjct: 21  WHYVEGVVHSVAALYGFSEIRTPVFEYTELFQRGIGATTDIVGKEMFTFLPDPNGRSLTL 80

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +           +      + I   FR E        +  +F  +     +  
Sbjct: 81  RPEMTAGVMRACLQKNLLSQAPVHKLWYISDLFRKERPQAGRQRQFTQFGAELLGVSNPA 140

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD------TGETQ 220
                 +        L +       +     +      +    +    +      + E  
Sbjct: 141 AVAEVLTLMMQVFETLGLHGLRLRINSLGDLDDRARYREALRAYFQPYEADLDELSKERL 200

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSI-----VEQWTAPYAATSDVHNEKLFDSL-PEN 274
                  +D   P+          L        V ++    A   D       D L    
Sbjct: 201 KKNPLRILDSKNPALQEMIMGAPRLYHSLKPESVAEFEQVLAYLDDRQIAYNVDHLLVRG 260

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                           G + ++     + G     G    +    + +G  R++  + + 
Sbjct: 261 LDYYCHTAFEVTSSELGAQDAIGGGGRYDGLARELGASADLPAVGFAVGMERLMIVMEKQ 320

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                       V+                     ++   L K G     D     + +Q
Sbjct: 321 GLFATLNPHGPLVSVIIQQK--------ELAGHAMQVAFHLRKAGIKTEIDLAERSMKAQ 372

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              A+ +G    + VG          +K+ +T  +  + L+ +I     
Sbjct: 373 MRDANRMGSAYALFVGQSEFESGIYALKNLVTSEQTSLDLDAIIEVLRE 421


>gi|303269709|ref|ZP_07355463.1| histidyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302640742|gb|EFL71135.1| histidyl-tRNA synthetase [Streptococcus pneumoniae BS458]
          Length = 426

 Score = 87.1 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 118/409 (28%), Gaps = 19/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFAREIFKRYNYAEVRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVL------ADT 216
           +   +      M   +L+     G+K         ES         +++         D+
Sbjct: 137 SNPATDVETIAMAAHFLKEIGIQGVKLHLNTLGNPESRAAYRQALIDYLTPLKETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S L+ + E+  A + A   +      D + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDFLDEESQAHFDAVRQMLENLGVDYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNDLTV-CAGGRYDGLVAYFGGPETAGFGFGLGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + I            ++   L + G     D +  ++ +QF  A
Sbjct: 315 ILEKQGVALPIENALDVYIAVLGDGANVKALELVQALRQQGFKAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D+      + +G   V   +V +K+  T     + LE +    S  F  
Sbjct: 375 DVFAAKTLITLGESEVESRQVTVKNNQTREEVQVLLETISQNFSEIFEK 423


>gi|242082049|ref|XP_002445793.1| hypothetical protein SORBIDRAFT_07g025840 [Sorghum bicolor]
 gi|241942143|gb|EES15288.1| hypothetical protein SORBIDRAFT_07g025840 [Sorghum bicolor]
          Length = 692

 Score = 87.1 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 83/293 (28%), Gaps = 30/293 (10%)

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSHEFIVLADTG 217
                   +         +     +       +  ++A +    +      +F    +  
Sbjct: 394 NEMAHYAADCWDAEIECSYGWIECVGIAD-RSAYDLKAHTEKSGVPLVAHEKFSKPREVE 452

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           +  +  SK  +            +  +L ++ E+      A  +   E  F      K V
Sbjct: 453 KLVIVPSKKDLGLAFKGNQKMVLE--ALEAMSEKEAFEMKAELETKGETNFRVCTLGKDV 510

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                         TK  + +S   K    +     +     G  R++  + E S   + 
Sbjct: 511 VI------------TKKMVSISMEKKLEHQRVFTPSVIEPSFGIGRIIYCLFEHSFYTRP 558

Query: 338 IIWPDSV---APFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
               +       F   +  IK        +Q    A + I   L+  G     D     I
Sbjct: 559 SKSEEEQLNVFRFPPLVAPIKCTVFPLVKNQEFDAAAKVIAKALTTAGISHIIDTTAISI 618

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G ++A  D +G P  V V S       V I+ R +  +  + + EV +     
Sbjct: 619 GRRYARTDEIGVPFAVTVDSAT----NVTIRERDSKEQIRVDINEVASVVKQL 667



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAI 67
           +E  R A + + +  L    +  I++   G+Y + P G +   NV +  R+        +
Sbjct: 75  REELRQAVVNTLERKLFYIPSFKIYRGVAGLYDYGPPGCRVKANVLSFWRQHFVLEENML 134

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
           E+  P +    +   SG  + +   M++  ++           ++  
Sbjct: 135 EVDCPCVTPEVVLKASGHVEKFTDLMVKD-EKTGTCYRADHLLKDFC 180


>gi|227504994|ref|ZP_03935043.1| histidyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
 gi|227198358|gb|EEI78406.1| histidyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
          Length = 426

 Score = 87.1 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/422 (13%), Positives = 122/422 (28%), Gaps = 26/422 (6%)

Query: 38  GIYSWLPLGQKALDNV-NAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           G+  ++P        V   ++ +     G   + +P  +   L+        D   KEM 
Sbjct: 15  GVPDYIPPQSATFYKVRENLVHQAHLS-GFQHIELPIFEDTTLFARGVGESTDVVSKEMY 73

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             ADR D+++   P     +      H      LP         FR E RP+ G  R  +
Sbjct: 74  TFADRGDRSVTLRPEGTAGVMRSVIEHNLDRGQLPVKLNYFGPFFRYE-RPQAGRYRQLQ 132

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIV 212
             +         P            S+  +        +    +    P   +   +F+ 
Sbjct: 133 -QVGVEAIGVDDPALDAEIIALADRSFRSLGLSKFRLELTSLGDHNCRPAYREKLQDFLF 191

Query: 213 LADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             D  E      Q+   +   D     +    D  + L+ + E+    +   + + ++  
Sbjct: 192 KLDLDEETRKRAQINPLRVLDDKRPEVQEQLVDAPLMLDHLNEECRTHFETVTGLLDDMG 251

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            +     + V          F F     +      +   G           +G   +   
Sbjct: 252 IEYTINPRMVRGLDYYTKTCFEF-----VHPLLGAQSGIGGGGRYDGLMAQLGGQELSGI 306

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK----IYARLSKVGCDVF--W 381
                 D   +               +           ++    I   L   G      +
Sbjct: 307 GYGLGVDRTILALEAEGIELDGVDQRVAVFGVALGADAKRRMAGIINDLRNAGISADMSF 366

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            D G + G+    AD  G    +++G + + +  V +K      + D++++ ++ +  ++
Sbjct: 367 GDRGLK-GAM-KGADRAGARFALVLGEQELENGVVAVKDLAAHEQNDVAIDALVEHLRNQ 424

Query: 442 FS 443
            +
Sbjct: 425 LN 426


>gi|156937361|ref|YP_001435157.1| glycyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
 gi|156566345|gb|ABU81750.1| glycyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
          Length = 580

 Score = 87.1 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            ++   +  ++++  L+  G  V +D+ G  IG ++A  D +G P  + V  + + D+ V
Sbjct: 479 EEKPLVEKAKEVWKLLADAGFRVEYDEKG-SIGRRYARYDEVGVPAAITVDFQTLEDNTV 537

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
            ++ R T  +  + +EE+        +
Sbjct: 538 TLRDRDTWKQVRVRVEELPGKLRAFLN 564



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 43/368 (11%), Positives = 97/368 (26%), Gaps = 35/368 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNR---TGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G Y   PLG++  + +  + +E+  R      +EM  P +    +   SG  +++   +
Sbjct: 29  AGFYDLGPLGKELKNKIVELWKEKLVRPLQRMVVEMETPIITPYKVLEASGHVENFTDPV 88

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS- 152
           +       K        E++   +     +    L             EL      +   
Sbjct: 89  VECKSCGRKFRADHLIEEKLGIKVEGLSPEDLTKLIRENNIRCPVCGGELGEVRPFLLLF 148

Query: 153 -REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH-------------RLGLKSIPMRAE 198
             +    +     + PE ++ ++      Y  +               R  +        
Sbjct: 149 QTQIGPYEGDKGFIRPETAQGAFVNFKRVYQYMRERLPFGIAQIGRVGRNEISPRQGLLR 208

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDF----MDFPIPSENTDFD----DIISLNSIVE 250
                      FI   D GE  +           +          +    + +    I+ 
Sbjct: 209 LREFTIAEIEFFIDPLDPGEPPLDYDAKLRLLPWELAKEGRKEPVEVTVREALEKGWIIN 268

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           +W A +   +     +L     EN+    +G E          YS          +    
Sbjct: 269 KWMAYWMLKAKELLNELGVP-DENQYFEEKGPEE------RAHYSSQTYDQLVKTERYGW 321

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC--RDACEKI 368
               G    G   +   +  S  D             K+ ++   A +     +   +++
Sbjct: 322 MEVSGHAYRGDYDLSRHIKFSGKDLYAFRKYKEPKVVKVKVVKWNAKEIGIRLKAKAKQV 381

Query: 369 YARLSKVG 376
              L ++ 
Sbjct: 382 IEELKRMN 389


>gi|157361671|gb|ABV44793.1| glutamyl-prolyl-tRNA synthetase [Crassostrea ariakensis]
          Length = 153

 Score = 87.1 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 8/138 (5%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R I+     + G  +S       +  +  +      +      R +  +     D KG++
Sbjct: 16  RAIQGATSHHLGQNFSKMFEICIQDQETLEKQYVYQNSWGLTTRTIGVMCMIHGDNKGLV 75

Query: 340 WPDSVAPFKISLINI-------KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQ 391
            P +VA  ++ ++         K  +Q   D CE +   L  +      D       G +
Sbjct: 76  LPPNVASVQVIIVPCGITASLSKKDEQELMDKCEALKKELLALDIRARTDLRDNYSPGWK 135

Query: 392 FAVADLLGFPLQVIVGSK 409
           F   +L G P++V +G +
Sbjct: 136 FNHWELKGVPIRVELGPR 153


>gi|298711240|emb|CBJ32460.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 147

 Score = 87.1 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 41/90 (45%)

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            V RD C ++ ++  K G  V  D   E++  Q   A+    P+  +VG K V+   + +
Sbjct: 41  DVARDYCLEVQSKFKKAGLRVKVDRGSERLAKQIRTAEKERIPVMSVVGEKEVAAGTLAV 100

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           + R  G   D+ ++E+I       +  + +
Sbjct: 101 RSRGFGDMGDVPIDELIASMLEADAAAKEL 130


>gi|66359666|ref|XP_627011.1| glycyl-tRNA synthetase [Cryptosporidium parvum Iowa II]
 gi|46228457|gb|EAK89327.1| glycyl-tRNA synthetase [Cryptosporidium parvum Iowa II]
          Length = 656

 Score = 87.1 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 35/88 (39%)

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           + + +  D    ++      G     D     IG ++A  D +G P  + +  + V D  
Sbjct: 548 SSNAIFNDLINLLHKSFINHGISCKVDTSSASIGRRYARTDEIGIPFGITIDFQSVKDDT 607

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           V ++ R +  +  +S  EV +  S   +
Sbjct: 608 VTLRERDSMKQVRISSSEVPSVISKIIN 635



 Score = 48.6 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 7/94 (7%)

Query: 25  LMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R   I           G++ + P G      V +  R         +E+S   L   
Sbjct: 16  LLKRRFFIAPSFEIYGGVAGLFDYGPPGCALKSEVESFWRRHFVLAEDMLEISATCLTPY 75

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHE 111
           +    SG  D +   M+     N+         E
Sbjct: 76  NPLKASGHVDRFTDSMITDIKTNEYYRADKVLEE 109


>gi|83720664|ref|YP_442756.1| histidyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|257138966|ref|ZP_05587228.1| histidyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|123726593|sp|Q2SWE3|SYH_BURTA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|83654489|gb|ABC38552.1| histidyl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 446

 Score = 87.1 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 113/426 (26%), Gaps = 29/426 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIVMMCQRLWEDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 TGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               ++     +     P+   +T    +  +     +        S  H E L   L  
Sbjct: 193 QHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSRAHFEGLQRLLKA 252

Query: 274 NKR------VSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           N           RG++     +F + T           G        Q+G     A    
Sbjct: 253 NNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWA 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW---- 381
             +       K            + +++        R+    +  RL   G DV      
Sbjct: 313 MGIERILELLKEEHLVPEQEGVDVYVVHQG---DAAREQAFIVAERLRDTGLDVILHCSA 369

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGI------REDMSLEEV 434
           D  G    SQ   AD  G    VI G   V++    +K  R TG       ++ + +E +
Sbjct: 370 DGAGASFKSQMKRADASGAAFAVIFGEDEVTNGTASVKPLRGTGDDGEKSVQQSVPVESL 429

Query: 435 INYASH 440
             +  +
Sbjct: 430 TEFLIN 435


>gi|125624984|ref|YP_001033467.1| histidyl-tRNA synthetase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|166228557|sp|A2RN96|SYH_LACLM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|124493792|emb|CAL98784.1| HisS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071783|gb|ADJ61183.1| histidyl-tRNA synthetase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 430

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 64/416 (15%), Positives = 121/416 (29%), Gaps = 29/416 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DSYGKEMLR 95
           G    LP        +  I R   N     E+  P  +S +L+   +G   D   KEM  
Sbjct: 8   GTADLLPAETAKWQYIEEIARGVFNDYNFKEIRTPMFESYELFSRATGETSDIVTKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P         +  +      +  P   +     FR E        R R
Sbjct: 68  FEDKGGRHIALRPEGTASAVRAYIENKLYAPEVVKPVKLWYDAPMFRYERPQSG---RLR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVS---------YLRIFHRLGLKSIPMRAESGPIGG 204
           +F         L           M  +              + LG            I  
Sbjct: 125 QFHQFGVECLGLKNPAVDVEIIAMADTLFRQLGISGVKLSLNTLGDMESRKAYRQALIDY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               E  +  D+           +D     +     +  ++   + + +  Y        
Sbjct: 185 LTPFENQLSEDSRRRLNENPLRVLDSKEAEDIAIVKNAPAILDYLNETSKAYFEEVKALL 244

Query: 265 EKL-FDSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYG 318
           E L  +   ++  V         IF F     G + ++     + G           ++G
Sbjct: 245 EALNIEYTIDSNMVRGLDYYNDTIFEFIVNFDGKELTVCGGGRYDGLVEYFDGPATPAFG 304

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G       +I    +        +  P +   + I    +       K+   L +    
Sbjct: 305 FGLGIERLLMIAEKQEI-------NFIPEETLDVYIAVMGEKANLEATKLAESLREQAFK 357

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           V  D    ++G+QF  A+ LG  L + +G   V   ++++KH  T  + + +L+ V
Sbjct: 358 VERDFSNRKLGAQFKTAEKLGAELIITLGEDEVRTGQIKVKHNQTRKQVETTLQAV 413


>gi|123968214|ref|YP_001009072.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
 gi|166228596|sp|A2BQA4|SYH_PROMS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123198324|gb|ABM69965.1| Histidyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
          Length = 426

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 63/424 (14%), Positives = 123/424 (29%), Gaps = 26/424 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G     P       NV  I+ E+ +R    E+  P L+  +L++       D   KEM  
Sbjct: 9   GTVDLFPDQLIKWQNVEKILLEQLSRASIKEIRTPILEMTELFIRGIGEGTDVVSKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +++    P     +      +  S   +   +Y +   FR E        R R+F
Sbjct: 69  FLDRGERSCTLRPEGTASVARALIQNGISSNPIQKLWY-MGPMFRYERPQAG---RQRQF 124

Query: 156 LMKD-AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                 +    +           +    ++  +     I    ++     +    F+   
Sbjct: 125 HQLGVEFIGHDSVRSDVEIIALAWDILRKLGIKELNLEINTLGDTND-RSNFQKSFLKWL 183

Query: 215 DTGET--QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN-------E 265
           +T +    +         P+   ++       +     +     +  S           E
Sbjct: 184 ETNKDSLDLDSQNRISKNPLRILDSKNIQTKKVLENAPRLFNFLSEKSHNRYLDLKRQLE 243

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            L     EN  +        H  +  T  +L   AT  G    D  ++     +G     
Sbjct: 244 VLKIPYVENFNLVRGLDYYTHTAFEITSGALGSQATVCGGGRYDDLIKQ----MGGPNTP 299

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           A       +   ++    +   + + I I     V       +  +L      V  D  G
Sbjct: 300 AIGFAIGLERLILLAGKELEIPRNTDIYIINKGLVAESLAMDLSRKLRNYDLLVELDLSG 359

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLEEVINYASHR 441
                QF  A+ L     +++G     + +  I+           E +S E  I    + 
Sbjct: 360 ASFSKQFKKANKLKSKSIIVIGEDEAVNGEFIIRLFDQSGNGNEEEVISFENDI-KLENW 418

Query: 442 FSNN 445
            +NN
Sbjct: 419 INNN 422


>gi|300704413|ref|YP_003746016.1| histidyl-tRNA synthetase (histidine--tRNA ligase) [Ralstonia
           solanacearum CFBP2957]
 gi|299072077|emb|CBJ43409.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) [Ralstonia
           solanacearum CFBP2957]
          Length = 432

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/425 (12%), Positives = 101/425 (23%), Gaps = 30/425 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      ++ +  +R      G  ++  P ++   L+V   G   D   KEM  
Sbjct: 9   GMNDLLPGDAPLWEHFDNAVRSMLRAYGYQQIRTPIVEHTQLFVRGIGEVTDIVEKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMR 151
             D  +   +                     + P   +     FR E   R         
Sbjct: 69  FTDSLNGEHLTLRPEGTAAAVRAVIEHNLLYDGPKRLWYTGPMFRHERPQRGRYRQFHQV 128

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             E L       D                         L     RA            F 
Sbjct: 129 GVEALGFAGPDIDAEVILMCQRLWDDLGLVGLKLELNSLGQAEERAAHRADLIKYLEGFQ 188

Query: 212 VLADTGETQVFCSKDF--MDFPIPSENTD------FDDIISLNSIVEQWTAPYAATSDVH 263
            + D    +   +     +D   P+            D +   S+           ++  
Sbjct: 189 DILDEDGKRRLYTNPLRVLDTKNPALQEMAAGAPKLIDYLGEASLKHFEGVQALLKANNI 248

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L          +        G + ++     +     +       + G     
Sbjct: 249 PYTINPRLVRGLDYYNLTVFEWTTDKLGAQGTVAGGGRYDPLIEQIGGKPAPACGWAMGV 308

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW-- 381
                +                   + +++     QV          RL   G DV    
Sbjct: 309 ERIIELLR-----EERLAPEPQGCDVYIVHQGDQAQVQALVA---AERLRDAGLDVILHC 360

Query: 382 --DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG----IREDMSLEEVI 435
             +       SQF  AD  G    VI+G   V+    +IK          ++ +  ++++
Sbjct: 361 SPEGSNGSFKSQFKRADASGASYAVIIGDDEVAAGVAQIKPLRGEPNADTQQTVPSDQLV 420

Query: 436 NYASH 440
           +    
Sbjct: 421 DRLID 425


>gi|295398027|ref|ZP_06808083.1| histidine--tRNA ligase [Aerococcus viridans ATCC 11563]
 gi|294973785|gb|EFG49556.1| histidine--tRNA ligase [Aerococcus viridans ATCC 11563]
          Length = 430

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 62/436 (14%), Positives = 131/436 (30%), Gaps = 32/436 (7%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MI +  KG    LP        +    R   N+    E+  P  +S +L+  S     D 
Sbjct: 1   MIQRP-KGTADILPEDMNLWHFIEETARRILNQYRYFEIRTPMFESYELFSRSVGETTDV 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPR 146
             KEM    D+ ++ +   P     +   +  +         P+  Y +   FR E    
Sbjct: 60  VSKEMYDFYDKGNRHIALKPEGTAPIVRAYVENKLYAPEQVKPYKVYYMGPMFRYERPQS 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
             + +  +  ++     +   +    +        L I H   + +      S       
Sbjct: 120 GRLRQFHQIGVEVFGEANAAKDVETIALAMDLFKSLNIQHIKLVINSLGDTSSRLAYRQA 179

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             +++    T E            P+   ++     I + +         +  S     +
Sbjct: 180 LIDYLTPF-TEELSEESKTRLHKNPLRVLDSKDKKDIEIVANAPSILDYLSEESTKRFNE 238

Query: 267 LFDSL--------PENKRVSARGIEVGHIFY-------FGTKYSLPMSATFKGADGKDHY 311
           +   L         +   V         IF        FG + ++     + G   +   
Sbjct: 239 VQSLLTALGIEFEIDPNMVRGLDYYQDTIFEIMSEDKVFGAQTTICGGGNYDGLVQEISD 298

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
            +  + G G    +  +I         +    +    + ++NI        +A  K+   
Sbjct: 299 GKESAPGFGFGLGIERLILLM--KAQEVQVPDMHELDVYVVNIGDGTD---EAAMKVLQY 353

Query: 372 LSKVGCDVFWDDMG---EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           +   G      D      +   QF  A+ LG  L V +G   + ++++ +KH  +G    
Sbjct: 354 VRHAGFSA---DRNFFGAKPKKQFRDANKLGADLVVTIGESELENNQITVKHMTSGKEAA 410

Query: 429 MSLEEVINYASHRFSN 444
             LE+  +  +  +  
Sbjct: 411 YPLEKFADDFASIYQE 426


>gi|33861180|ref|NP_892741.1| histidyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|39932079|sp|Q7V263|SYH_PROMP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|33639912|emb|CAE19082.1| Histidyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 429

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 62/423 (14%), Positives = 117/423 (27%), Gaps = 26/423 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP       NV  II ++  R+   E+  P L+  +L++       D   KEM  
Sbjct: 9   GTVDLLPDQLIKWQNVEKIIIQQLFRSSVKEIRTPILEMTELFMRGIGEGTDVVSKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +++    P     +      H  S        + +   FR E        R R+F
Sbjct: 69  FLDRGERSCTLRPEGTASVARALIQHGIS-TRPSQKLWYMGPMFRYERPQAG---RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                         S      +    L+      L              +    F+   +
Sbjct: 125 HQLGVEFIGYESVNSDIEIITLAWDILQKLGIKELNLEINTLGDHIDRSNFQKAFLKWLE 184

Query: 216 TGET--QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP- 272
             +    +   +     P+   +T       +     +     +  S      + + L  
Sbjct: 185 VNKNSLDLDSQRRIDKNPLRILDTKNVQTKQILKGAPRLFDFLSEKSLERYLIIKEKLKL 244

Query: 273 -----ENKRVSARGIEVGHIFYFG-TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                       RG++      F  T  +L   AT  G    D  +      +G     A
Sbjct: 245 LKIPFIENFNLVRGLDYYTHTAFEITTGTLGSQATVCGGGRYDSLISQ----MGGAETPA 300

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                  +   I+    +   + + I I            ++  +L      V  D  G 
Sbjct: 301 IGFAIGLERLIILCGSELEETRETDIYIVNKGIHAEILAMELSRKLRNYDLVVELDLSGA 360

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSLEE---VINYAS 439
               QF  A+ L     +++G      ++  I+           E +S+E+   +  +  
Sbjct: 361 SFSKQFKKANKLKSKSIIVIGDDEAVKNEFVIRLFNNDNSVNKEETISIEDNMKLEKWIK 420

Query: 440 HRF 442
              
Sbjct: 421 SNL 423


>gi|119944924|ref|YP_942604.1| histidyl-tRNA synthetase [Psychromonas ingrahamii 37]
 gi|119863528|gb|ABM03005.1| histidyl-tRNA synthetase [Psychromonas ingrahamii 37]
          Length = 448

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 63/428 (14%), Positives = 125/428 (29%), Gaps = 44/428 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        + ++ R+  +  G  E+ +P +++  L+  S G   D   KEM  
Sbjct: 34  GMNDTLPEQTPVWQKLESLFRQVVSSYGYSEIRMPIVENTTLFKRSIGEVTDIVEKEMYT 93

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN  ++   P            H   Y      +Y     FR E   +    +  +F
Sbjct: 94  FADRNGDSLTLRPEGTASCVRAGNEHGLLYNQERRLWYT-GPMFRHERPQKGRYRQFHQF 152

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK--------SIPMRAESGPIGGDLS 207
            ++         +      +      L I  ++ L+        +  +  E+  +     
Sbjct: 153 GVETFGIGSADIDAEVILLSARLWRALGIDKQVELQLNSLGSNEARALYKEALVVYLSTH 212

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEK 266
            E +   D+    V      +D   P       D   L++ ++  +A  +A      +  
Sbjct: 213 VEQLDE-DSKRRMVSNPLRVLDSKNPDIQALLVDAPKLSAYLDDESAEHFAQLQKYLDAA 271

Query: 267 LFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGI 319
               +   + V         +F       G++ ++     + G              + +
Sbjct: 272 GIKYVINERLVRGLDYYNRTVFEWVTTSLGSQGTICAGGRYDGLVEQLGGKATPAVGFAM 331

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL------- 372
           G  R     I    +   +           S++     D       E I   L       
Sbjct: 332 GLER-----IILMLETLALNDDVKKDVDIYSIVVGDGADIAGFKVAELIRTELPMLKMMH 386

Query: 373 -SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMS 430
               G              Q   AD  G  L +I+    +    V IK       ++ ++
Sbjct: 387 HCGAG----------NFKKQMKRADKSGARLALIIAENELESDCVTIKDLQGKYEQQSVA 436

Query: 431 LEEVINYA 438
           + E+I   
Sbjct: 437 MNELIKVL 444


>gi|148263944|ref|YP_001230650.1| histidyl-tRNA synthetase [Geobacter uraniireducens Rf4]
 gi|146397444|gb|ABQ26077.1| histidyl-tRNA synthetase [Geobacter uraniireducens Rf4]
          Length = 415

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 67/414 (16%), Positives = 118/414 (28%), Gaps = 39/414 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
             ++ A  R      G  E+ VP L+  +L+  S     D   KEM    D+ + ++   
Sbjct: 20  WQHIEATARRVFELYGFAEIRVPILEKTELFCRSIGDSTDIVEKEMYSFTDKGENSVTMR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  H     +     Y +   FR E   +    R R+F    A    +T 
Sbjct: 80  PEGTASVMRAFIEHKLYVADAVAKLYYMGPMFRYERPQKG---RYRQFHQIGAEVTGVTD 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD--TGETQVFCSK 225
                    M       F  LGL    ++  S            VL D      +  C  
Sbjct: 137 PKVDAQVLTML---CHFFAELGLDEPSLQINSLGCPDCRPQYRQVLKDFLRSRLEYLCDD 193

Query: 226 DFMDFPIPSENTDFDDIIS-----------LNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
               F                         L+ +       +  T               
Sbjct: 194 CKRRFETNPLRALDCKSTGCKEATVGAPSVLDHLCASCNDHFTRTRQHLEAVGTTYSINA 253

Query: 275 KRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           + V          F       G++ ++     + G        Q+   G        A++
Sbjct: 254 RMVRGLDYYTRTTFELVTGLLGSQSAVAAGGRYDGLISDLGGPQLPGIGFAMGVERVALL 313

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            +  D +           K   + I A  +  ++   ++   L K G  V  D  G+ + 
Sbjct: 314 LAEKDFR-----------KRPDLFIAALGESAQNMAFRLMCGLQKEGAAVEIDYEGKSLK 362

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           SQ   AD       +I+G   ++     +K+   G + D+ L   +   + R  
Sbjct: 363 SQMRRADKFNARFTLIIGDDELTKGAAGLKNMDEGSQSDVELN--VGVIAQRIK 414


>gi|328851152|gb|EGG00310.1| hypothetical protein MELLADRAFT_39835 [Melampsora larici-populina
           98AG31]
          Length = 658

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 103/304 (33%), Gaps = 12/304 (3%)

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           + ++R  EFL+K     D +    +   +     Y        + S     E        
Sbjct: 334 YFLVRIYEFLIKIG--IDDSRLRFRQHMDNEMAHYATDCWDAEILSSYGWIECVGCADRS 391

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           +++  V +    T++   +   +     +N    D        ++   P   +    +++
Sbjct: 392 AYDLTVHSIRTGTKLVVREPLKEGIEFEKNVPVFDKKLFGPRFKKDAKPIEESMMEMDQE 451

Query: 267 LFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +         S   +  G  +   +        TFK    ++    +     G  R
Sbjct: 452 RLECIGNELSSTGSSKVKVSNGKEYELTSDVLKIEKRTFK-ETTREFTPNVIEPSFGIGR 510

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGC 377
           ++ +++E +   +       V     S+  IK      +  +V R   + I  +L KVG 
Sbjct: 511 ILYSLLEHTFWTREEDINRGVLSLPPSISPIKVLIVPLSGTEVFRPIIKIISDKLRKVGL 570

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
               DD    IG ++A  D LG P  + V    V +  V ++ R +  +   S++EV+  
Sbjct: 571 ANRVDDSNASIGKRYARNDELGTPFGITVDFGSVKNQTVTLRERDSTKQLIGSIDEVLKV 630

Query: 438 ASHR 441
               
Sbjct: 631 LEDL 634



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G Y + P G     N+    R         +E+    +  A++   SG  D +   M+R
Sbjct: 43  AGFYDYGPPGSALQSNILNEWRRHFIIEEDMLELDTTCITPAEVLKTSGHVDKFSDWMVR 102

Query: 96  LA 97
             
Sbjct: 103 DT 104


>gi|227827929|ref|YP_002829709.1| glycyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|229585196|ref|YP_002843698.1| glycyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
 gi|227459725|gb|ACP38411.1| glycyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|228020246|gb|ACP55653.1| glycyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
          Length = 574

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 5/141 (3%)

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---HDQVCR 362
            G+     +     G  R +   I S++  K      S+                 +   
Sbjct: 420 HGEHFIPHVVEPSFGVERTLFLTILSAYREKEGRVLLSLPRHLAPYDIAVFPLLEREELI 479

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I   LS+   +V +DD G  IG ++A AD +G P  + V  + + D+ V I+ R 
Sbjct: 480 RKSMEIRENLSEK-YEVLYDDSG-SIGRRYARADEIGIPFAITVDPQTLLDNSVTIRDRD 537

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +  +  + ++++       F 
Sbjct: 538 SWKQVRVKIDDLKISLEKLFR 558



 Score = 48.2 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRTG---AIEMSVPTLQSADLWVESGRYDSYGK 91
           G Y   P+G K  + +  + R+   +      +E+  P +  A ++  SG  +S+  
Sbjct: 29 AGFYDIGPIGVKIKNRIAELWRKYFVKDNSDFVVEIESPMIGPAKVFEASGHVESFTD 86


>gi|50083798|ref|YP_045308.1| histidyl-tRNA synthetase [Acinetobacter sp. ADP1]
 gi|81695938|sp|Q6FEM2|SYH_ACIAD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|49529774|emb|CAG67486.1| histidyl-tRNA synthetase [Acinetobacter sp. ADP1]
          Length = 430

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/421 (10%), Positives = 113/421 (26%), Gaps = 23/421 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP    A   +   +    +  G  ++ +P ++   L+  +     D   KEM    D+ 
Sbjct: 14  LPTQTAAWRRLEQHLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMYTFFDKG 73

Query: 101 DKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
                     E     +         R      + +   FR E   +    +  +F ++ 
Sbjct: 74  TPPESLTLRPEGTAGCVRAMLEHNLLRGATPRVWYVGPMFRYEKPQKGRYRQFHQFGVET 133

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK-SIPMRAESGPIGGDLSHEFIVLADTGE 218
                   +             + +  ++ L+ +     +          EF+       
Sbjct: 134 FGVATPDIDAELILMTARLWKRMGVSEKVQLELNTLGEIDERAAYRTALVEFLTQHKEAL 193

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------- 271
            +    +     P+   ++  +    +     +        S  H  +L + L       
Sbjct: 194 DED-SQRRLGTNPLRILDSKVESTQKILENAPKLHDFLQEDSLAHFNQLQEYLTHAGVSF 252

Query: 272 ------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                         + +        G++ ++     + G  G+       S       + 
Sbjct: 253 VINQKLVRGLDYYNKTVFEWTTTALGSQGTVCAGGRYDGLVGQLKGKADQSVPAVGFAMG 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS--KVGCDVFWDD 383
              +    +              +   +      +     E+I  +         V    
Sbjct: 313 MERLLLLLEQVEQAEVVRDCDVFLVAESAFQGHALV--LAEQIRDQFEGLASTIRVKT-G 369

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               + SQ   AD  G    VI+G +  +  ++ +K   T  +  +++ E++ +   +F 
Sbjct: 370 SQGSMKSQMKKADQSGAHYAVILGEREWTTQELTVKELATSEQSQVAISELVPFLVKKFE 429

Query: 444 N 444
            
Sbjct: 430 K 430


>gi|303253248|ref|ZP_07339397.1| histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307248199|ref|ZP_07530227.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302647930|gb|EFL78137.1| histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306855376|gb|EFM87551.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 423

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 61/415 (14%), Positives = 125/415 (30%), Gaps = 33/415 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               +   +R      G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIENKVRNVLAGYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P                Y N    +Y +   FR E   +    R R+F       F + 
Sbjct: 80  RPEGTAGCVRAAIERGWIYNNEQRLWY-MGPMFRHERPQKG---RYRQFHQAGVEVFGIP 135

Query: 167 PEGSKHSYNKMF----------VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                     +                  + +G         S  +    +H  ++  + 
Sbjct: 136 NPEIDAELIILTARLWKELGIDQHVSLQLNSIGSLEARANYRSALVKFLENHTALMSDEE 195

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA------TSDVHNEKLFDS 270
            E  V      +D    +     +D   L   ++  +  + A       +     ++   
Sbjct: 196 KERLVKNPLRILDTKNQALQEVLNDAPKLLDYLDDDSREHFAHLCHLLDAMGITYEVNPK 255

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAV 328
           L        + +        G++ ++     + G       H  Q   + +G  R+V  V
Sbjct: 256 LVRGLDYYNKTVFEWVTSALGSQGTVCGGGRYDGLVEQLGGHATQGVGFAMGLERLVLLV 315

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E + +       D    +      +           E+I + L ++G        G   
Sbjct: 316 QEVNKEINLPKAVDVYVVYSGEGATLN-----AFQMAERIRSELPQLGVMTHC--SGGNF 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
             QF  AD +   + +++G   V    V +K   +G  +  ++  ++I   + RF
Sbjct: 369 KKQFKRADKVEAQIALVIGESEVEQQTVVLKDLQSGAEQVTIAQADLIAELTKRF 423


>gi|260549072|ref|ZP_05823293.1| histidyl-tRNA synthetase [Acinetobacter sp. RUH2624]
 gi|260407800|gb|EEX01272.1| histidyl-tRNA synthetase [Acinetobacter sp. RUH2624]
          Length = 430

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/421 (9%), Positives = 111/421 (26%), Gaps = 23/421 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP    A   +   +    +  G  ++ +P ++   L+  +     D   KEM    D+ 
Sbjct: 14  LPTQTAAWRRLEQHLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMYTFFDKG 73

Query: 101 DKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           +         E     +         R      + +   FR E   +    +  +F ++ 
Sbjct: 74  NPPESLTLRPEGTAGCVRALVEHNLLRGATPRVWYMGPMFRYEKPQKGRYRQFHQFGVET 133

Query: 160 AYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                            +++             +     +      +    F+       
Sbjct: 134 FGVATPDIDAELILLTARLWKRMGVDHMVQLELNTLGETDERTEYRNALVAFLNEHKDAL 193

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------- 271
            +    +     P+   ++  +    +     +        S  H ++L D L       
Sbjct: 194 DED-SQRRLTTNPLRILDSKIESTQKILENAPKLHDFLKEDSLNHFQQLQDYLTAAGVKF 252

Query: 272 ------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                         + +        G++ ++     + G  G+       S       + 
Sbjct: 253 VINQKLVRGLDYYNKTVFEWTTTALGSQGTVCAGGRYDGLVGQLKGKADQSVPAVGFAMG 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK--VGCDVFWDD 383
              +    +              +          +     E++  +L        +    
Sbjct: 313 MERLLLLLEQVEKAEIVRDCEVFLVAEPAYQAKALV--LAEQLRDQLEATNSNIRIKT-G 369

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               + SQ   AD  G    +I+G +     ++ +K   T  +  ++L E++ +   +F+
Sbjct: 370 SQGSMKSQMKKADQAGAVYAMILGEREWEAQQLALKELATAEQTQVALAELVPFLIEKFT 429

Query: 444 N 444
            
Sbjct: 430 K 430


>gi|237745512|ref|ZP_04575992.1| histidyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
 gi|229376863|gb|EEO26954.1| histidyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
          Length = 454

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 60/458 (13%), Positives = 115/458 (25%), Gaps = 47/458 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           + +EN   A+     L +R         G+   LP      + +   +       G   +
Sbjct: 1   MSEENK--AKKIRKILGIR---------GMNDILPDESPVWELLENTVESVLKSYGYERI 49

Query: 70  SVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
             P ++   L+    G   D   KEM    D  +   +                     N
Sbjct: 50  RTPIVEETSLFARGLGAVTDIVEKEMYSFEDSLNGDQLTLRPECTAGVVRAVLEHNLTYN 109

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH---------SYNKMF 178
                +     FR E   R    R R+F    A +                     +   
Sbjct: 110 GSKRLWYTGPMFRHERPQRG---RYRQFHQIGAEAVGFPGPDIDAELILLCQRLWDDLGL 166

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +     + +G      R  +  I     H+ ++  D            +D   P     
Sbjct: 167 DNIRLELNSIGNAEERNRHRADLIAYFERHKDVLDEDAQRRLYSNPLRILDTKNPHMQDM 226

Query: 239 FDDIISL--NSIVEQWTAPYAATSDVHN----EKLFDSLPENKRVSARGIEVGHIFYFGT 292
            +    L      E           +        +   L        R +        G 
Sbjct: 227 VNAAPKLLDYLDRESLDHFEGVKKILRRNNIPFTINPRLVRGMDYYNRTVFEWISEELGA 286

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           + ++     +      + +    +   G    V  +IE      GI           + +
Sbjct: 287 QGTVCGGGRY--DPLFEMFGGKFTPSCGFAMGVERLIELMKAKGGIDSSK------KADV 338

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWD----DMGEQIGSQFAVADLLGFPLQVIVGS 408
            I    +        +   L   G DV       + G    +Q   AD  G    +++G 
Sbjct: 339 FIAHQGEDALLEATVLAEALRNTGLDVILYCASLNSGGSFKAQMKRADESGATFAILIGE 398

Query: 409 KFVSDSKVEIKHRL----TGIREDMSLEEVINYASHRF 442
             +S  +  +K          +  +  E+V +Y   + 
Sbjct: 399 DEISSGQASVKALRAENAGNNQTSVPFEKVADYLVDQI 436


>gi|116512890|ref|YP_811797.1| histidyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
 gi|122939953|sp|Q02WI8|SYH_LACLS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|116108544|gb|ABJ73684.1| histidyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
          Length = 430

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 64/416 (15%), Positives = 121/416 (29%), Gaps = 29/416 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DSYGKEMLR 95
           G    LP        +  I R   N     E+  P  +S +L+   +G   D   KEM  
Sbjct: 8   GTADLLPAETAKWQYIEEIARGVFNDYNFKEIRTPMFESYELFSRATGETSDIVTKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGVMRSR 153
             D+  + +   P         +  +      +  P   +     FR E        R R
Sbjct: 68  FEDKGGRHIALRPEGTASAVRAYIENKLYAPEVVKPVKLWYDAPMFRYERPQSG---RLR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVS---------YLRIFHRLGLKSIPMRAESGPIGG 204
           +F         L           M  +              + LG            I  
Sbjct: 125 QFHQFGVECLGLKNSAVDVEIIAMADTLFRQLGISGVKLSLNTLGDMESRKAYRQALIDY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               E  +  D+           +D     +     +  ++   + + +  Y        
Sbjct: 185 LTPFENQLSEDSRRRLNENPLRVLDSKEAEDIAIVKNAPAILDYLNETSKAYFEEVKALL 244

Query: 265 EKL-FDSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYG 318
           E L  +   ++  V         IF F     G + ++     + G           ++G
Sbjct: 245 EALNIEYTIDSNMVRGLDYYNDTIFEFIVNFDGKELTVCGGGRYDGLVEYFDGPATPAFG 304

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G       +I    +        +  P +   + I    +       K+   L +    
Sbjct: 305 FGLGIERLLMIAEKQEI-------NFIPEETLDVYIAVMGEKANLEATKLAESLREQAFK 357

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           V  D    ++G+QF  A+ LG  L + +G   V   ++++KH  T  + + +L+ V
Sbjct: 358 VERDFSNRKLGAQFKTAEKLGAELIITLGEDEVRTGQIKVKHNQTRKQVETTLKAV 413


>gi|302674551|ref|XP_003026960.1| hypothetical protein SCHCODRAFT_79562 [Schizophyllum commune H4-8]
 gi|300100645|gb|EFI92057.1| hypothetical protein SCHCODRAFT_79562 [Schizophyllum commune H4-8]
          Length = 660

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 93/313 (29%), Gaps = 27/313 (8%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
              +   +     K   N   + + +              ++         E +  AD  
Sbjct: 330 LGYFMARIHTFLLKIGINPQRLRFRQHMANEMAHYATDCWDAEIHNSTGWTECVGCADRA 389

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE---- 273
              +    +    P+       + I+    + E        T      K+ +++ +    
Sbjct: 390 AYDLTVHSNKTGHPLVVREALKEPIVEEKDVPEWNKKVLGKTYKADASKITEAVEKLDQA 449

Query: 274 ---------NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                        +   +  G  F   T   L +         ++    +     G  R+
Sbjct: 450 ALAEVKKSLEGGKATVTLADGRQFDL-TSEVLTIPRKTLKTSVREFTPNVIEPSFGLGRI 508

Query: 325 VAAVIESSHDGKGIIW------------PDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           +  ++E S   +                P  VAP K+ ++ + A  +       ++ A+ 
Sbjct: 509 LYTLLEHSFWIRAPTKDGERAERGVLSLPPLVAPTKVLIVPLSAK-EEFDPLVAEVSAKF 567

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            K G     DD    IG ++A  D LG P  V +    V    + ++ R T  +   S++
Sbjct: 568 RKAGIFSRVDDSNASIGKRYARNDELGTPYGVTLDFASVQKRTMTLRERDTMDQRIGSID 627

Query: 433 EVINYASHRFSNN 445
           EVI   +    + 
Sbjct: 628 EVIATVADLVHHR 640



 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYD 87
              I+  + G+Y + P G     N+ A  R+      G +E+    +  A ++  SG   
Sbjct: 30  AFEIYGGTAGLYDYGPPGSALQANIIAEWRKHFIVEEGMLELDTTIMTPAPVFETSGHVA 89

Query: 88  SYGKEMLRLADRND 101
            +   M++     D
Sbjct: 90  RFADWMVKDTKTGD 103


>gi|327312529|ref|YP_004327966.1| glycine--tRNA ligase [Prevotella denticola F0289]
 gi|326946200|gb|AEA22085.1| glycine--tRNA ligase [Prevotella denticola F0289]
          Length = 515

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 58/355 (16%), Positives = 115/355 (32%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  E+   A+  +K  +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 198 FSTEVGASAEATNKIYLRPETAQGIFVNFLNVQKTGRMKLPFGICQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           V R REF   +   F   P      +       L     LG              GD ++
Sbjct: 258 VFRMREFEQMEMQFFCQ-PGTEMKWFEYWKKHRLAWHEALG-------------MGDENY 303

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            F             +      P                        +     +H+   F
Sbjct: 304 RFHDHEKLAHYANAATDIEFHMPF----------------------GFKEVEGIHSRTDF 341

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D L ++++ S R I+     +   +         + + G D                   
Sbjct: 342 D-LSQHEKFSGRQIKY----FDPERNESYTPYDVETSIGVDRMFLSVM----CHSYTEEQ 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P+ +AP K +++ +   D    +  ++I   L     +    +  + I
Sbjct: 393 LENGSSRVVLKLPEPLAPVKCAVLPLVNKD-GLPEKAQEIVNSLK-FHFNTHM-EAKDSI 449

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  V V    ++D+ V +++R +  +E + +E++      R S
Sbjct: 450 GKRYRRQDAIGTPFCVTVDGDTLNDNTVTLRYRDSMKQERVPVEKLRGIIEDRVS 504


>gi|255325082|ref|ZP_05366188.1| histidine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
 gi|255297647|gb|EET76958.1| histidine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
          Length = 429

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 57/426 (13%), Positives = 117/426 (27%), Gaps = 34/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+  + P    A   V   + E+ + +G   + +P  +   L+        D   KEM  
Sbjct: 15  GVPDYFPPQSAAFYKVRQTMVEQAHLSGFQHIELPIFEDTALFARGVGESTDVVSKEMYT 74

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR D+++   P     +      H      LP         FR E RP+ G  R  + 
Sbjct: 75  FADRGDRSVTLRPEGTAGVMRSVIEHNLDRGQLPVKLNYFGPFFRYE-RPQAGRYRQLQ- 132

Query: 156 LMKDAYSFDLTPEGSKHSYN------------KMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            +         P                       +    +  R    +   + +     
Sbjct: 133 QVGVEAIGVDDPALDAEVIALADRSFRALGLSGFRLELTSLGDRNCRPAYREKLQKFLFK 192

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            DL  E    A+    +V   K   +      +         +   E +        D+ 
Sbjct: 193 LDLDEETRHRAEINPLRVLDDKRP-EVQEQLADAPLMLDHLNDECREHFETVTGMLDDMG 251

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                +          RG++      F     +      +   G           +G   
Sbjct: 252 VAYEINP------RMVRGLDYYTKTCFEF---VHDGLGAQSGIGGGGRYDGLMAQLGGQD 302

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK----IYARLSKVGCDV 379
           +         D   +               +         A ++    +   L K G   
Sbjct: 303 LSGIGYGLGVDRALLALEAEGITLDGVESRVDVFGVALGAAAKRTMTTLINDLRKAGISA 362

Query: 380 F--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
              + D G + G+    AD  G    +++G + + +  V +K      + D+ + ++++ 
Sbjct: 363 DMSFGDRGLK-GAM-KGADRAGARFALVLGEQELENGTVALKDLAAHEQHDVKVSDLVSV 420

Query: 438 ASHRFS 443
            +   +
Sbjct: 421 LAREMN 426


>gi|323475017|gb|ADX85623.1| glycyl-tRNA synthetase [Sulfolobus islandicus REY15A]
 gi|323477747|gb|ADX82985.1| glycyl-tRNA synthetase [Sulfolobus islandicus HVE10/4]
          Length = 574

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 5/141 (3%)

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---HDQVCR 362
            G+     +     G  R +   I S++  K      S+                 +   
Sbjct: 420 HGEHFIPHVVEPSFGVERTLFLTILSAYREKEGRVLLSLPRHLAPYDIAVFPLLEREELI 479

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I   LS+   +V +DD G  IG ++A AD +G P  + V  + + D+ V I+ R 
Sbjct: 480 RKSMEIRENLSEK-YEVLYDDSG-SIGRRYARADEIGIPFAITVDPQTLLDNSVTIRDRD 537

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +  +  + ++++       F 
Sbjct: 538 SWKQVRVKIDDLKISLEKLFR 558



 Score = 48.6 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRTG---AIEMSVPTLQSADLWVESGRYDSYGK 91
           G Y   P+G K  + +  + R+   +      +E+  P +  A ++  SG  +S+  
Sbjct: 29 AGFYDIGPIGVKIKNRIVELWRKYFVKDNSDFVVEIESPMIGPAKVFEASGHVESFTD 86


>gi|238620156|ref|YP_002914982.1| glycyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
 gi|238381226|gb|ACR42314.1| glycyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
          Length = 574

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 5/141 (3%)

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---HDQVCR 362
            G+     +     G  R +   I S++  K      S+                 +   
Sbjct: 420 HGEHFIPHVVEPSFGVERTLFLTILSAYREKEGRVLLSLPRHLAPYDIAVFPLLEREELI 479

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I   LS+   +V +DD G  IG ++A AD +G P  + V  + + D+ V I+ R 
Sbjct: 480 RKSMEIRENLSEK-YEVLYDDSG-SIGRRYARADEIGIPFAITVDPQTLLDNSVTIRDRD 537

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +  +  + ++++       F 
Sbjct: 538 SWKQVRVKIDDLKISLEKLFR 558



 Score = 48.2 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRTG---AIEMSVPTLQSADLWVESGRYDSYGK 91
           G Y   P+G K  + +  + R+   +      +E+  P +  A ++  SG  +S+  
Sbjct: 29 AGFYDIGPIGVKIKNRIAELWRKYFVKDNSDFVVEIESPMIGPAKVFEASGHVESFTD 86


>gi|227830651|ref|YP_002832431.1| glycyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|229579559|ref|YP_002837958.1| glycyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
 gi|229581777|ref|YP_002840176.1| glycyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
 gi|284998179|ref|YP_003419946.1| glycyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
 gi|227457099|gb|ACP35786.1| glycyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|228010274|gb|ACP46036.1| glycyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
 gi|228012493|gb|ACP48254.1| glycyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
 gi|284446074|gb|ADB87576.1| glycyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
          Length = 574

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 5/141 (3%)

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---HDQVCR 362
            G+     +     G  R +   I S++  K      S+                 +   
Sbjct: 420 HGEHFIPHVVEPSFGVERTLFLTILSAYREKEGRVLLSLPRHLAPYDIAVFPLLEREELI 479

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I   LS+   +V +DD G  IG ++A AD +G P  + V  + + D+ V I+ R 
Sbjct: 480 RKSMEIRENLSEK-YEVLYDDSG-SIGRRYARADEIGIPFAITVDPQTLLDNSVTIRDRD 537

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +  +  + ++++       F 
Sbjct: 538 SWKQVRVKIDDLKISLEKLFR 558



 Score = 48.6 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRTG---AIEMSVPTLQSADLWVESGRYDSYGK 91
           G Y   P+G K  + +  + R+   +      +E+  P +  A ++  SG  +S+  
Sbjct: 29 AGFYDIGPIGVKIKNRIVELWRKYFVKDNSDFVVEIESPMIGPAKVFEASGHVESFTD 86


>gi|189424820|ref|YP_001951997.1| histidyl-tRNA synthetase [Geobacter lovleyi SZ]
 gi|259511949|sp|B3EB83|SYH_GEOLS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189421079|gb|ACD95477.1| histidyl-tRNA synthetase [Geobacter lovleyi SZ]
          Length = 419

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 64/416 (15%), Positives = 113/416 (27%), Gaps = 39/416 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP        +    R+   R G  E+ VP ++  +L+  S     D   KEM  
Sbjct: 8   GFNDLLPAESGLWQFIEQTARQVFARYGFNEIRVPIVEKTELFCRSIGDTTDIVEKEMYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+   ++   P     +      H     +     Y +   FR E   +    R R+F
Sbjct: 68  FMDKGGSSLTLRPEGTASVMRALIEHKLYALDSINKLYYMGPMFRHERPQKG---RYRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHE 209
               A                  +   R+F   GL    ++  S       P        
Sbjct: 125 HQIGAEVTGAADPLIDAQV---LLMVSRLFQEFGLTEPRLQINSLGCPACRPAYRQALVA 181

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F+        +  C +     P+ + +      I                 D H   + +
Sbjct: 182 FLAERQEALCED-CRRRQGTNPLRALDCKVPGCIEATQGAPAMVEHLCNECDQHFSMVQN 240

Query: 270 SL-------------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            L                     R          G + ++     + G   +     +  
Sbjct: 241 YLTAAEVPFSLNPRMVRGLDYYTRTTFELVTGLLGAQSAVAAGGRYDGLVEQLGGPAVPG 300

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            G        A++      +           K   + I       R A  ++ A L   G
Sbjct: 301 IGFALGVERVALLLGDRSFE-----------KTPDLFIAVMGDAARTAGFRLMAALQDQG 349

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             V  D  G+ + SQ   AD L     +++G   +      +K    G ++ + LE
Sbjct: 350 FWVETDCEGKSLKSQMRRADKLKSRYSIVLGDTELVAGSGTLKRMADGNQQPVHLE 405


>gi|227833227|ref|YP_002834934.1| Histidyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|262184213|ref|ZP_06043634.1| histidyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454243|gb|ACP32996.1| Histidyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
          Length = 425

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 60/422 (14%), Positives = 123/422 (29%), Gaps = 28/422 (6%)

Query: 38  GIYSWLPLGQKALDNV-NAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           G+  ++P        V  A + +     G   + +P  +   L+        D   KEM 
Sbjct: 15  GVPDYVPPQSAIFAKVREAFVHQAHLS-GFQHIELPVFEDTSLFARGVGESTDVVSKEMY 73

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             ADR D+++   P     +      H      LP         FR E RP+ G  R  +
Sbjct: 74  TFADRGDRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLNYFGPFFRYE-RPQAGRYRQLQ 132

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIV 212
             +         P            SY  +        +    +    P   +   EF+ 
Sbjct: 133 -QVGVEAIGVDDPALDAEIIALADRSYRSLGLSQFRLELTSLGDHDCRPAYREKLQEFLF 191

Query: 213 LADTGETQVFCSK-----DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             D  E     ++        D     +    D  + L+ +  +    +   + + ++  
Sbjct: 192 KLDLDEETKARAELNPLRVLDDKRPEVQEQLVDAPLMLDHLNAECREHFETVTGLLDDMG 251

Query: 268 FDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                  + V          F       G +  +     + G   +    ++   G G  
Sbjct: 252 VPYTINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQELSGIGYGLG 311

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF-- 380
                +   +   +     + VA + ++L          +     I   L K G      
Sbjct: 312 VDRTVLALEAEGVELEGVDERVAVYGVALG------AAAKQKMVSIINDLRKAGISADMS 365

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           + D G + G+    AD       +++G + +    V +K      + D+ + +++N    
Sbjct: 366 FGDRGLK-GAM-KGADRANARFALVLGDQELEAGSVALKDLRAHEQHDVPVGDIVNQLRQ 423

Query: 441 RF 442
             
Sbjct: 424 LV 425


>gi|293346809|ref|XP_001061006.2| PREDICTED: glycyl-tRNA synthetase [Rattus norvegicus]
 gi|293358585|ref|XP_216152.5| PREDICTED: glycyl-tRNA synthetase [Rattus norvegicus]
 gi|149033299|gb|EDL88100.1| rCG52516 [Rattus norvegicus]
          Length = 728

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/286 (10%), Positives = 76/286 (26%), Gaps = 22/286 (7%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 418 FRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKE 477

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-------------VGHI 287
                    E              + + + L          +E              G  
Sbjct: 478 PKTVNVVQFEPNKGAVGKAYKKDAKLVLEYLGACDECYITEMELLLSEKGEFTIETEGKT 537

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F              K    ++    +     G  R++  ++E +   +      +   F
Sbjct: 538 FQLTKDMVSVKRFQ-KTLHVEEVVPSVIEPSFGLGRIMYTILEHTFHVREGDEQRTFFSF 596

Query: 348 KISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
              +   K      + +Q      +++   L++ G     DD    IG ++A  D +G  
Sbjct: 597 PAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGVA 656

Query: 402 LQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + +    V+       ++ R +  +    + E+ +      + N
Sbjct: 657 FGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPSVVRDLANGN 702



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 134 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 193

Query: 96  LADRNDK 102
                + 
Sbjct: 194 DVKNGEC 200


>gi|331269254|ref|YP_004395746.1| histidyl-tRNA synthetase [Clostridium botulinum BKT015925]
 gi|329125804|gb|AEB75749.1| histidyl-tRNA synthetase [Clostridium botulinum BKT015925]
          Length = 420

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/405 (13%), Positives = 116/405 (28%), Gaps = 16/405 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   ++   +     E+  P  +  +L+        D   KEM    D+ D+++   
Sbjct: 23  WHYIEGKLKGLASEYALREIRTPIFEHTELFERGVGETTDVVQKEMYTFKDKGDRSITLK 82

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
                     F  +      LP   +     FR E   +  + +  +F ++   S + + 
Sbjct: 83  AEGTAPAARAFIENGLFNEALPIKMFYFTPVFRYENVQKGRLRQHHQFGVEVFGSSEASV 142

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +               I +     +     E      D   E+       E    C   +
Sbjct: 143 DAEIIGLAMRAFKEFGINNLELNINNIGCPECRKKYNDALREYFKE-QYDELCDTCKTRY 201

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSARG 281
              P+   +        +                 H E L   L       +      RG
Sbjct: 202 ERNPMRLLDCKNKKCKEIGKNAPVILDYVCDDCKNHFENLKTYLDALSIEYKVNPYIVRG 261

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIW 340
           ++      F    +          +G    +    +  +G    +  +I +  +    I 
Sbjct: 262 LDYYTKTVFEIINNDITVCGGGRYNGLIEEIGGKPTPAVGFGMGIERLILTLGENSIEIP 321

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
                   +  +  K   +       K+   L + G     D M + + +Q   A+ +  
Sbjct: 322 KPQEMDIYVGSMGEKGKIESF-----KVVNALREKGIKAECDHMNKSVKAQMKYANKIEA 376

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              +I+G   + + KV +K    G + ++SL  + +  +    NN
Sbjct: 377 LYSMIIGDTEIEEGKVNLKRMEDGQQFEVSLNNL-DEIATLVLNN 420


>gi|322490976|emb|CBZ26240.1| putative glycyl tRNA synthetase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 628

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 55/453 (12%), Positives = 123/453 (27%), Gaps = 58/453 (12%)

Query: 28  RTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           R G +  + ++GI             +    +   +   A    +P          +G  
Sbjct: 186 RLGYMRPELAQGI-------------ILNF-KRLMDSGNAQ--RMPF---------AGAC 220

Query: 87  --DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR--NLPFTFYQIQLKFRDE 142
              ++  E+   +             E  +    ++H K  R  ++    +   L+  +E
Sbjct: 221 IGTAFRNEIAPRSALIRVREFTLAEIEHFVNPNNKNHEKFDRVRDVEIWAWPRNLQASNE 280

Query: 143 LRPRFGVMRSREFLMKDAY---SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
              R  +    E  + D      F         +    F  + +              ++
Sbjct: 281 DPIRMTIGEGVEAKVIDNQTLGYFMGRVALFLTAVGVRFYRFRQHQSTEMAHYAQDCWDA 340

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDF--------MDFPIPSENTDFDDIISLNSIVEQ 251
             +      E + +AD     +    +          ++  P         ++   I + 
Sbjct: 341 ELLTSYGWIECVGIADRSAYDLTQHSNASKKDLCAREEYDEPCMERQLLRQLTKGLIGKT 400

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD----- 306
           +           N    ++    +   A G         G + S+               
Sbjct: 401 FGKKAGEVMAYLNSAPAEACEAIRAAHAVGQPATVTLPSGEEVSITAQMVSFEEKDVKVT 460

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK----------A 356
           G  +   +     G  R++  ++E S+  +      +      S   +            
Sbjct: 461 GYSYTPSVIEPSFGIGRILYCLLEQSYWVRRDDGGKNDKRAVFSFSPLLAPQKVALLPLM 520

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     +I   L   G  V  DD    IG ++A  D LG P  +    +   D  V
Sbjct: 521 VKPELLATISEIRQELVLRGISVRVDDSSVTIGKKYARVDELGIPFAITCDFEG--DGSV 578

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
            ++ R T  +  +   EV +      +  +P++
Sbjct: 579 TLRERDTASQVRVPKSEVASVVVELCNPLQPLI 611



 Score = 44.0 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 1/76 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y   P       N+    R+         E+    L   +++  SG    +   M+R
Sbjct: 40  AGLYDLGPTMCAMKSNMLHFWRQHFVIEESMCEVDTTCLTPEEVFKASGHVTRFNDVMVR 99

Query: 96  LADRNDKAMIYGPTHE 111
                +         E
Sbjct: 100 DTVTGECIRADKFLEE 115


>gi|145518031|ref|XP_001444893.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412326|emb|CAK77496.1| unnamed protein product [Paramecium tetraurelia]
          Length = 640

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/365 (10%), Positives = 97/365 (26%), Gaps = 17/365 (4%)

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
            R     +      PT +       +        L         + +             
Sbjct: 252 CREFQMAEIEYFVDPTEKSTFKKFNKYINLEIPLLSRQLQAEAKQHQPFKMGDAVKEGII 311

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
                  +         +   N + + + +              ++         E + L
Sbjct: 312 NNETLAYFICRTYLYLVEIGINPVNIRFRQHQADEMAHYSSDCWDAEIEMSSGWVECVGL 371

Query: 214 ADTGETQVFCSKDFMDFPIPSE---NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           AD     +    +     + +           +   ++ +Q          +   K  ++
Sbjct: 372 ADRSAYDLNAHSEATGQKLQAARKFKVPQPRQVLQVTLDKQKIGKELKKDGMALIKYVEA 431

Query: 271 LPENKRVSARGIEVGH---IFYFGTKYSLPMSATFKGADGKDHYV------QMGSYGIGA 321
           LP++++         H   +F    K         K      + +       +     G 
Sbjct: 432 LPDDEKQELSDYFQNHEDKVFNIDGKDLTLNRQLVKFEQKTMNVMEEKFIPHVIEPAFGI 491

Query: 322 MRVVAAVIES---SHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVG 376
            R++ A+IE      D     +            +I      +   +   ++ + L K+G
Sbjct: 492 GRILQAIIEHSFNQRDDPQKTFFKFSPRVAPVKCSILSVVQSEEFDNVIFELTSSLKKLG 551

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                D+ G  +G ++A  D +G P  + V  + ++   V ++   T  +  + + EV  
Sbjct: 552 ISCKTDNAGVALGKKYARTDEIGIPFAITVDKETLTAQSVTLREIETTKQVRVPIAEVPR 611

Query: 437 YASHR 441
                
Sbjct: 612 LILEL 616



 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G+Y + P+G     N+    RE         E++   L    +   SG  D +   +
Sbjct: 52  AGLYDYGPVGCAIKTNIEQYWREHFIIEEDLFEIAATILTPEPVLKASGHVDRFTDLL 109


>gi|262043501|ref|ZP_06016622.1| tetraacyldisaccharide 4'-kinase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039164|gb|EEW40314.1| tetraacyldisaccharide 4'-kinase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 123

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 3/106 (2%)

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           +      P  ++P +  ++ I           E++   L K G     D   E+IG +  
Sbjct: 10  EHYVGKLPAWLSPVQAVVMTITDK---QHHYAEQVLKALRKKGLRCEADLRNEKIGFKIR 66

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              L   P  +IVG    + ++V ++ R       + L E  +   
Sbjct: 67  EQTLARIPFLLIVGDAEENAARVTVRDRTGRCMGTLLLNEAADAIK 112


>gi|260943664|ref|XP_002616130.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238849779|gb|EEQ39243.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 653

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 6/142 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              ++    +     G  R++ ++ E     +      SV      +   K      +  
Sbjct: 487 EHVREFTPNVIEPSFGIGRILYSIFEHQFWSRPEDKDRSVLSLPPLVAPTKVLVVPLSSH 546

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  +KI A L K       DD    IG ++A  D LG P  + +      D  V +
Sbjct: 547 ADLLPLVKKISAVLRKEQIPFKVDDSSASIGKRYARNDELGTPFGITIDFDTAKDGSVTL 606

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R +  +   S+E+++     
Sbjct: 607 RERDSTKQVRGSVEDIVRAVKE 628



 Score = 47.4 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     NV    R+        +E+    L   ++   SG  D +   M R
Sbjct: 35 SGLYDYGPPGCAFQANVVDTWRKHFILEEDMLEVDCTMLTPHEVLKTSGHVDKFADWMCR 94


>gi|19114847|ref|NP_593935.1| mitochondrial and cytoplasmic glycine-tRNA ligase Grs1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1711632|sp|Q10179|SYG_SCHPO RecName: Full=Putative glycyl-tRNA synthetase; AltName:
           Full=Diadenosine tetraphosphate synthetase; Short=AP-4-A
           synthetase; AltName: Full=Glycine--tRNA ligase;
           Short=GlyRS
 gi|1182050|emb|CAA93301.1| mitochondrial and cytoplasmic glycine-tRNA ligase Grs1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 652

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 6/140 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA------HD 358
              + +   +     G  R++  ++E ++  +       V  F  S+  IKA       +
Sbjct: 488 EHIRTYTPNVIEPSFGLGRILYVLMEHAYWTRPEDVNRGVLSFPASIAPIKALIVPLSRN 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
                  +K+ A+L  +G     DD    IG ++A  D LG P  + V  + + +  + +
Sbjct: 548 AEFAPFVKKLSAKLRNLGISNKIDDSNANIGRRYARNDELGTPFGLTVDFETLQNETITL 607

Query: 419 KHRLTGIREDMSLEEVINYA 438
           + R +  +   S +EVI   
Sbjct: 608 RERDSTKQVRGSQDEVIAAL 627



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 7/79 (8%)

Query: 24 KLMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQS 76
          +LM +               G+Y + P G     N+  I R+        +E+    L  
Sbjct: 17 ELMKKRFFFSPSFQIYGGISGLYDYGPPGSALQSNLVDIWRKHFVIEESMLEVDCSMLTP 76

Query: 77 ADLWVESGRYDSYGKEMLR 95
           ++   SG  D +   M +
Sbjct: 77 HEVLKTSGHVDKFADWMCK 95


>gi|307110228|gb|EFN58464.1| hypothetical protein CHLNCDRAFT_34068 [Chlorella variabilis]
          Length = 696

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 65/428 (15%), Positives = 124/428 (28%), Gaps = 98/428 (22%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +       +   LPF   QI   +R+E+ PR G++R REF   +   F
Sbjct: 254 YLRPETAQGIFVNFKDLLYYNGSKLPFAAAQIGNSYRNEISPRAGLLRVREFTQAEIEHF 313

Query: 164 DLTPEGSKHSYNKMFV-------------------------------------------S 180
               + S   +  +                                             +
Sbjct: 314 CNPADKSHPKFQSVAEVAPLLYSRELQMGDEKKPKRIPLGTAVAKGIIANETLAYFIGRT 373

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA-DTGETQVFCSKDFMDFPIPSENTDF 239
           YL          + + A+       L HE    A D  + +V CS  +++    ++ + +
Sbjct: 374 YLFAQRASQWGGVGLNADRVRFRQHLQHEMAHYAEDCWDFEVECSYGWVECAGLADRSAY 433

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK------ 293
           D          + +A Y   ++     +   +P  K       E+G +F    K      
Sbjct: 434 DLNAHAAMSKVEMSA-YERFAEPQEVDVLSIVPNKK-------ELGRLFKKDAKAIADAL 485

Query: 294 --YSLPMSATFKGA--------------------------------DGKDHYVQMGSYGI 319
              S   +    G                                  G++    +     
Sbjct: 486 EAMSECDALEMAGKLAAGQAAGIKADGQAFEMQPGFVEIKKQRKKMSGRNFTPAVIEPSF 545

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA------HDQVCRDACEKIYARLS 373
           G  R++  V E     +      SV  F      +K             +  E + A L+
Sbjct: 546 GIGRILYCVFEHCFYTREGDDQRSVFSFTPVTAPVKCTVFPLLQRAELNERAEAMSAALT 605

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +       D  G  IG ++A  D +G P  + +  + V DS   ++ R +  +  + L E
Sbjct: 606 RERLSNTVDTTGTTIGKRYARTDEIGVPFAITIDYQTVEDSTATLRERDSTAQVRVPLAE 665

Query: 434 VINYASHR 441
           +       
Sbjct: 666 LPALVRRL 673



 Score = 48.6 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G Y + P G     NV    R         +E+  P +    +   SG  + +   M+ 
Sbjct: 102 AGFYDYGPPGCAMKQNVTQTWRNHFILEENMLELECPAVTPEIVLKASGHVERFTDFMVT 161

Query: 96  LADRNDKA 103
                D  
Sbjct: 162 DVKTGDCH 169


>gi|325851859|ref|ZP_08171024.1| glycine--tRNA ligase [Prevotella denticola CRIS 18C-A]
 gi|325484701|gb|EGC87614.1| glycine--tRNA ligase [Prevotella denticola CRIS 18C-A]
          Length = 515

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 58/355 (16%), Positives = 115/355 (32%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  E+   A+  +K  +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 198 FSTEVGASAEATNKIYLRPETAQGIFVNFLNVQKTGRMKLPFGICQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           V R REF   +   F   P      +       L     LG              GD ++
Sbjct: 258 VFRMREFEQMEMQFFCQ-PGTEMKWFEYWKKHRLAWHEALG-------------MGDENY 303

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            F             +      P                        +     +H+   F
Sbjct: 304 RFHDHEKLAHYANAATDIEFHMPF----------------------GFKEVEGIHSRTDF 341

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D L ++++ S R I+     +   +         + + G D                   
Sbjct: 342 D-LSQHEKFSGRQIKY----FDPERNESYTPYDVETSIGVDRMFLSVM----CHSYTEEQ 392

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P+ +AP K +++ +   D    +  ++I   L     +    +  + I
Sbjct: 393 LENGSSRVVLKLPEPLAPVKCAVLPLVNKD-GLPEKAQEIVNSLK-FHFNTHM-EAKDSI 449

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  V V    ++D+ V +++R +  +E + +E++      R S
Sbjct: 450 GKRYRRQDAIGTPFCVTVDGDTLNDNTVTLRYRDSMKQERVPVEKLRGIIEDRVS 504


>gi|71018157|ref|XP_759309.1| hypothetical protein UM03162.1 [Ustilago maydis 521]
 gi|46099159|gb|EAK84392.1| hypothetical protein UM03162.1 [Ustilago maydis 521]
          Length = 681

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 84/287 (29%), Gaps = 9/287 (3%)

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            D T    +   +     Y        + +     E        +++  V +   +  + 
Sbjct: 371 IDATRLRFRQHMSNEMAHYASDCWDAEIHTSYGWIECVGCADRSAYDLTVHSKRTKKDLV 430

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSAR 280
             K   +  +           +L    ++            N++    L        +  
Sbjct: 431 VQKAHKEPKVYDALVPTIVKKNLGPKFKKDAKFVEEAILEMNQQQLAKLQRKLKNGSARL 490

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            I  G  +   T        T +    ++    +     G  R+  +++E S   +    
Sbjct: 491 SICTGETYVLTTDVVTVEMKTIR-ETVREFTPNVIEPSFGIGRIFYSLLEHSFWTRAEDQ 549

Query: 341 PDSVAPFKISLINIKAH------DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
              V      +  IKA       ++      +++  +L   G     DD    IG ++A 
Sbjct: 550 DRGVLSLPPLVAPIKASIVPISSNEKLSPLVKQVSRKLRSAGVASRVDDSNASIGRRYAR 609

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            D LG P    +    +S   + ++ R T  +    +++VI+     
Sbjct: 610 NDELGTPFACTLDFASLSKGTMTLRERDTTAQRIGPIDQVIDVIRQL 656



 Score = 46.7 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 11/70 (15%)

Query: 38  GIYSWLPLGQKALDNVNA------IIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           G+Y + P G     N+        II EE      +E+    +  +D+   SG  D +  
Sbjct: 58  GLYDYGPTGAALQANIINQWRNHFIIEEEM-----LELDTTIMTLSDVLKTSGHVDKFAD 112

Query: 92  EMLRLADRND 101
            M +     +
Sbjct: 113 WMCKDTKTGE 122


>gi|126668581|ref|ZP_01739535.1| histidyl-tRNA synthetase [Marinobacter sp. ELB17]
 gi|126626986|gb|EAZ97629.1| histidyl-tRNA synthetase [Marinobacter sp. ELB17]
          Length = 417

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 65/431 (15%), Positives = 121/431 (28%), Gaps = 49/431 (11%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V A +R+   + G  E+ +P ++  DL+  S G   D   KEM    DRN
Sbjct: 5   LPEQTPVWQYVEATVRKVLGQYGYQEIRMPIVEQTDLFKRSIGEVTDIVEKEMYTFDDRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P            H   +      +Y  Q+ FR E   +    R R+F     
Sbjct: 65  GDSLTLRPEGTAGCVRAAEQHGLLFNQTRRMWYTGQM-FRYERPQKG---RYRQFHQVGV 120

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV---LADTG 217
             F +           +     + F       + + +           E +V        
Sbjct: 121 ECFGMAGPDIDAELLMLTARLWKTFGLADHARLEINSIGTAEARRNYREALVAYLQQFKA 180

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF--------- 268
           E      +     P+   ++       +     +  A     S  H E+L          
Sbjct: 181 ELDEDSQRRLESNPLRILDSKSAATRKVLEQAPKLDAWLDDESRDHFERLKQLLDAAGIE 240

Query: 269 ----DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                +L        + +        G + ++     + G        Q+G     A+  
Sbjct: 241 YTVNPALVRGLDYYGKTVFEWITESLGAQGTICAGGRYDG-----LVEQLGGKPTVAVGF 295

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARL--------S 373
              V       + +         +  +      DQ    A    E++  +L         
Sbjct: 296 AMGVERLILLLETLNLIPESVNNQADVYVTAMGDQAVSPALLLAEELRDQLPGYIIIGHC 355

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLE 432
             G             SQ   AD  G    +I+G   + +  V +K   T   +++   +
Sbjct: 356 GAG----------SFKSQMKKADRSGARYALILGDNELQNQSVGLKSLRTDEPQQEFPRQ 405

Query: 433 EVINYASHRFS 443
           +V    +   S
Sbjct: 406 QVAEALAQALS 416


>gi|260821670|ref|XP_002606155.1| hypothetical protein BRAFLDRAFT_126484 [Branchiostoma floridae]
 gi|229291494|gb|EEN62165.1| hypothetical protein BRAFLDRAFT_126484 [Branchiostoma floridae]
          Length = 682

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 88/306 (28%), Gaps = 15/306 (4%)

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G    R FL              +         Y         K+     E         
Sbjct: 353 GYFMGRIFLFMTKVGVHPDKLRFRQHMENEMAHYACDCWDAECKTSYGWVECVGCADRSC 412

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            + +  +   +T +  SK   +  +            L   +++   P   T  + + + 
Sbjct: 413 FDLLQHSKATKTALCYSKPLPEPVMVDVTEIEPQKSVLGKTLKKDAKPV--TEHLQSLQE 470

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS----YGIGAMR 323
            D L   K +  +G E             P     K    K    ++         G  R
Sbjct: 471 EDILQLEKELQDKG-EAVVSVKGKDVSIKPDMIKVKRYQKKKFVEEITPGVIEPSFGIGR 529

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGC 377
           V+ AV+E +   +      +       +   K      + ++      +++   L+K   
Sbjct: 530 VMYAVLEHNFRMREGDEQRTFFSLPAMVAPYKCSVLPLSGNEEFVPFVKQLSDSLTKADI 589

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGIREDMSLEEVI 435
               DD    IG ++A  D +  P  + V    V+     V ++ R +  +  + +++V 
Sbjct: 590 SHKVDDSSGSIGRRYARTDEIAIPFGITVDFDTVNKEPSTVTLRERDSMGQVRLPIDDVP 649

Query: 436 NYASHR 441
              S  
Sbjct: 650 QVVSDL 655



 Score = 44.3 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 41/109 (37%), Gaps = 15/109 (13%)

Query: 9   PILQEN------PRDAEIASH-KLMLRTGMIHQHS-------KGIYSWLPLGQKALDNVN 54
             L+E       P +A   +  + +L+   ++  +        G++ + P+G    +N+ 
Sbjct: 49  KTLEEKEKSLAPPDEAFNRAKMEDLLKRRFVYDQAFSLYGGVAGLFDFGPIGCMMKNNIT 108

Query: 55  AIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
            + R         +E+    L  A++   SG  D +   M++     + 
Sbjct: 109 GMWRSHFILEESMLEIDCTMLTPANVLKASGHVDKFADHMVKDLKTGEC 157


>gi|223984104|ref|ZP_03634256.1| hypothetical protein HOLDEFILI_01548 [Holdemania filiformis DSM
           12042]
 gi|223963898|gb|EEF68258.1| hypothetical protein HOLDEFILI_01548 [Holdemania filiformis DSM
           12042]
          Length = 430

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 55/409 (13%), Positives = 118/409 (28%), Gaps = 14/409 (3%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
             LP   +    V  +IR   +  G  E+  P  +   ++  E+   D   KEM   +  
Sbjct: 13  DLLPEATRKWQKVEDLIRNLCDVYGYEEIRTPVFEDTRVFKRENDSSDMVNKEMYTFSVH 72

Query: 100 NDKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            + ++   P     +   F +  +     +P   Y +   FR E   +    +  +F ++
Sbjct: 73  GEDSLTLRPEGTAGVVRSFVQHKMYGRLEMPAKLYYMGEMFRYERPQKGRYRQFNQFGIE 132

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +        +    +     V  L +     L +     ES         E       GE
Sbjct: 133 NIGMKSPLIDAEVIALGYSIVKALGLSQVKVLINTLGDDESRAAYRGALRE-HFKDSVGE 191

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------- 271
               C + +   P+   +   D+       V          S  + +++  +L       
Sbjct: 192 LCADCQRRYEQNPLRLLDCKVDNEHPSMQNVPSLQQYLTPESKTYFDQVLAALDALEIPY 251

Query: 272 -PENKRVSARGIEVGHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             ++K V         +F    T       AT       D  V+       +    A  +
Sbjct: 252 EIDDKLVRGLDYYTHTVFEVVSTHPESGSQATVFAGGRYDGLVEYFGGPEMSGVGFAMGL 311

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           E           +      + +  +   +         +       G    ++     + 
Sbjct: 312 ERLMILAEAEQVELGEEASLDVYVMALGNVGTLPLA--LATECRAAGYHTEFNIQPRSLK 369

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +QF   D     + VI G    ++ ++ +K      +  +  +E+I   
Sbjct: 370 AQFKSVDRRKARVAVIAGESEAANHQINVKFIEQQRQITIDQDELIATL 418


>gi|330832115|ref|YP_004400940.1| histidyl-tRNA synthetase [Streptococcus suis ST3]
 gi|329306338|gb|AEB80754.1| histidyl-tRNA synthetase [Streptococcus suis ST3]
          Length = 427

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 60/420 (14%), Positives = 120/420 (28%), Gaps = 38/420 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R    +    E+  P  +  ++   S     D   KEM    D+ ++ +   
Sbjct: 20  WQYVENFTRSIFKQYNYAEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGERHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPAKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-----TGETQ 220
               +     +        F  LG+K I +   S       +     L D       +  
Sbjct: 137 NNPATD---VETIAMAYHFFEELGIKDIRLHLNSLGNPESRAAYRQALIDYLTPLKDQLS 193

Query: 221 VFCSKDFMDFPIPSENTDFDDII--------SLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
               +   + P+   ++   +           L+ + E+ TA + A   + +      + 
Sbjct: 194 KDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDYLDEESTAHFEAVKTMLDSLGIAYVI 253

Query: 273 ENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           +   V         IF F     G   ++     + G        +  ++G G       
Sbjct: 254 DTNMVRGLDYYNHTIFEFMTEVGGNDLTICAGGRYDGLVTYFGGPETPAFGFGMGIERLI 313

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++              +       + I    Q        +   + K G     D +  +
Sbjct: 314 LVL-------EKQGIELPLDTQLDVYIAVLGQEANGGALDLVQAIRKQGFRAERDYLDRK 366

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---INYASHRFSN 444
           + +QF  AD+ G    + +G   +   +V +K+  T  + + SLE +             
Sbjct: 367 LKAQFKSADVFGAKAIITLGGSEIESGQVVVKNNQTRSQVETSLEALKTDFASILEELEK 426


>gi|54288337|gb|AAV31625.1| predicted histidyl-tRNA synthetase [uncultured alpha
           proteobacterium EBAC2C11]
          Length = 422

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 73/431 (16%), Positives = 127/431 (29%), Gaps = 38/431 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q ++G    LP        V    R   +R G  EM+ P  + ++++        D   K
Sbjct: 5   QPARGTADLLPKNMAKHRLVIEAARNAASRYGFQEMATPIFEFSEVFSRPLGESSDIVTK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           E    +DR  + +   P +   +     S   + +NLP  ++     FR E   +    R
Sbjct: 65  ENYSFSDRGGEMLTLRPENTAGVVRAVISGGLT-QNLPLKYFYAGPMFRYERPQKG---R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYL--------RIFHRLGLKSIPMRAESGPIG 203
            R+F              +          +L         + H   L     RA      
Sbjct: 121 MRQFHQVGVEYLGPDHSLADAEVIACGARFLATLGVLDDCVLHLNSLGDGESRAAYRSAL 180

Query: 204 GDLSHEF--IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ-----WTAPY 256
            D   EF   +  D+           +D     + +   D   L   +       +    
Sbjct: 181 IDYLEEFGDQLSDDSKTRLKVNPLRILDSKDAGDRSILKDAPQLQDYLNDDSKTHFATLV 240

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           AA        +FD L     V          F F T  +L    T  G  G+   +    
Sbjct: 241 AALDAAGVAWVFDPL----LVRGLDYYCHTAFEFVT-NALGAQGTVLG-GGRYDGLAEML 294

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            G     V  A               +     I   +  A           +   L   G
Sbjct: 295 GGPRISGVGWAAGVERLAMLVGETVPASPKVAIVTADDAAQQAAFG-----LTETLRDAG 349

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE---- 432
            D+     G  +G +   AD  G  L VI+GS  ++ + V ++    G ++++ L+    
Sbjct: 350 IDIDLPI-GGSMGKKLKKADKAGIRLVVIMGSDELAKNIVLLRDLSDGSQQELPLDAEHK 408

Query: 433 -EVINYASHRF 442
            ++    +   
Sbjct: 409 SDLAAAIAKSL 419


>gi|21227490|ref|NP_633412.1| glycyl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|20905865|gb|AAM31084.1| Glycyl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 652

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D  ++I A+L +    V +DD G  IG ++   D +G P  V V    + D  V I
Sbjct: 555 KELADPAKEIVAKLREKNLLVNYDDSG-TIGRRYRRNDEIGTPYSVTVDYDTLQDGTVTI 613

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R +  +    +  + N      
Sbjct: 614 RDRDSMRQIRAPISGIENVLYELI 637



 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           G Y + PLG      +  I RE    + G +E+  PT+   D++V SG    +   +   
Sbjct: 59  GFYDYGPLGSTLKRRIEQIWREFYVIQEGHMEIECPTIGIEDVFVASGHVGGFSDPLCEC 118

Query: 97  ADRND 101
               +
Sbjct: 119 KKCGE 123


>gi|322818062|gb|EFZ25583.1| prolyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 378

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 81/237 (34%), Gaps = 24/237 (10%)

Query: 206 LSHEFIVLADTGETQVFCSKDFMD--FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           L  E      T E       + +D    +  E      +    +  E++   Y  T+   
Sbjct: 23  LWQEGHCAWQTEEECSQEVLEILDHYAAVYEELLAVPVVKGRKTEKEKFAGGYYTTTVET 82

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA---DGKDHYVQMGSYGIG 320
                           RG + G     G  +    + +F+     DG        S+G+ 
Sbjct: 83  YIAA----------IGRGCQGGTSHNLGQNFGKMFNISFQDPEKNDGSTLIPWQNSWGL- 131

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI----KAHDQV---CRDACEKIYARLS 373
           + RV+  +     D  G++ P  VA  ++ +I +       D+      + C+ +   L 
Sbjct: 132 STRVIGVMTMVHGDDSGMVLPPRVASVQVVIIPVGITKNTTDEERKSLLEGCKTLERVLV 191

Query: 374 KVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             G     D       G +F   ++ G P++V +G + ++  K+ +  R  G R  +
Sbjct: 192 SGGIRAKADLRDNYSPGWRFNHWEVKGVPVRVELGPRELASLKISLVLRHDGSRRSL 248


>gi|148827508|ref|YP_001292261.1| histidyl-tRNA synthetase [Haemophilus influenzae PittGG]
 gi|166227972|sp|A5UGH2|SYH_HAEIG RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|148718750|gb|ABQ99877.1| hypothetical protein CGSHiGG_04655 [Haemophilus influenzae PittGG]
          Length = 423

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 67/413 (16%), Positives = 129/413 (31%), Gaps = 29/413 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y     FR E   +    +  +  ++     +  
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWYI-GPMFRHERPQKGRYRQFHQAGVEVFGIANPE 138

Query: 167 PEGSKHSYNKMFVSYLRIFHR-------LGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +             L I          +G         S  +G   +H+ ++  +  + 
Sbjct: 139 IDAELIILTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLENHQDLMSDEEKDR 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-------APYAATSDVHNEKLFDSLP 272
            V      +D   P      D+   L   ++  +              D+  E +   L 
Sbjct: 199 LVKNPLRILDTKNPELQKVLDNAPKLLDYLDDESREHFEQLCSLLDAVDIQYE-INPKLV 257

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIE 330
                  + +        G + ++     + G       H      + +G  R+V  V E
Sbjct: 258 RGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAMGLERLVLLVQE 317

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            + +       D    ++     +        +  EK+ + L     +      G     
Sbjct: 318 VNPNVPVKSAVDIYVVYQGEGTTL-----AAFELAEKVRSELP--HLNTMLHCSGGNFKK 370

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
           QF  AD  G  L +++G   V + +V +KH   G  ++ + L  VI+Y   +F
Sbjct: 371 QFKRADKSGATLALVIGESEVQNKQVVVKHLQGGADQQTLDLVNVIDYIQTQF 423


>gi|332881107|ref|ZP_08448775.1| glycine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681019|gb|EGJ53948.1| glycine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 516

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 85/255 (33%), Gaps = 20/255 (7%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       G  Q +             +    +        E+      A 
Sbjct: 260 FRMREFEQMEMQFFIKPGTQQQWYEYWKETRLKWHLSLGMGEENYRYHPHEKLAHYADAA 319

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +      E + + +R       F  G   KYS      F   D +     +   
Sbjct: 320 CDI-EFRFPFGFKELEGIHSR-----TNFDLGNHEKYSGKKMQYFDPEDNQSFTPYVLET 373

Query: 318 GIGAMRVVAAVIESS---------HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            IG  R+  AV+ +S              +  P  +AP K++++ +   D    +  E+I
Sbjct: 374 SIGLDRMFLAVLSNSLQEETLEGGDTRTVLRLPFVLAPTKVAVLPLLKKD-GLPEVAEQI 432

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L     +V +D+    +G ++   D +G P  V V  + + D+ V ++HR T  +  
Sbjct: 433 VNELK-YDFNVAYDEKDA-VGRRYRRQDAVGTPFCVTVDHQTLEDNTVTLRHRDTMEQVR 490

Query: 429 MSLEEVINYASHRFS 443
           +++ E+    +    
Sbjct: 491 IAIPELRAAIAKEVD 505


>gi|28378623|ref|NP_785515.1| histidyl-tRNA synthetase [Lactobacillus plantarum WCFS1]
 gi|254556838|ref|YP_003063255.1| histidyl-tRNA synthetase [Lactobacillus plantarum JDM1]
 gi|300768151|ref|ZP_07078056.1| histidine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180779|ref|YP_003924907.1| histidyl-tRNA synthetase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|32130098|sp|Q88VQ7|SYH_LACPL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|28271459|emb|CAD64364.1| histidine--tRNA ligase [Lactobacillus plantarum WCFS1]
 gi|254045765|gb|ACT62558.1| histidyl-tRNA synthetase [Lactobacillus plantarum JDM1]
 gi|300494215|gb|EFK29378.1| histidine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046270|gb|ADN98813.1| histidyl-tRNA synthetase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 426

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 112/400 (28%), Gaps = 18/400 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V A  R         E+  P  ++ +++  S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEATARAVFKTYQFKEIRTPMFENFEVFSRSAGDTSDIVTKEMYDFHDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFD 164
           P     +   F  +      +  P+  Y +   FR E        R REF          
Sbjct: 80  PEGTAGVVRAFVENKLYGPQVLKPYKVYYMGPMFRYERPQSG---RLREFHQLGVEAFGS 136

Query: 165 LTPEGSKHSYNKMFVSYLRI--------FHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            +           +               + LG +          I     H   +  D+
Sbjct: 137 ESAALDVEVIAMGYNLLKTFGLTDLKLVINTLGDQQTRDDYRQALIDYLEPHFDELSDDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            E         +D   P +     D  S+ + +  +  A +  T    +        +  
Sbjct: 197 KERLHKNPLRVLDSKAPEDQQFVADAPSILDYLSPEAQAHFDQTKTYLDALAIPYEIDAT 256

Query: 276 RVSARGIEVGHIFYFGTK-YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            V         IF   T   +L    T   A G+ + +     G     V   +      
Sbjct: 257 MVRGLDYYNHTIFEIMTHSKALGKGYTTICAGGRYNGLVKELGGPEVSGVGFGLGVERLL 316

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                   +V       + +            K+   L   G     D +  +  +QF  
Sbjct: 317 VLMDAENIAVPTDDQLDVYVVGIGDTASATTLKLVQALRAAGYKAERDYLDRKPKAQFKS 376

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           AD L     + VG   ++D  V +K   TG    +++ ++
Sbjct: 377 ADRLNARYTMTVGETELADQVVNLKAMATGEETKVAMADI 416


>gi|154346178|ref|XP_001569026.1| glycyl tRNA synthetase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066368|emb|CAM44159.1| putative glycyl tRNA synthetase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 627

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 52/453 (11%), Positives = 116/453 (25%), Gaps = 60/453 (13%)

Query: 28  RTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY 86
           R G +  + ++GI             +    +   +   A    +P          +G  
Sbjct: 185 RLGYMRPELAQGI-------------ILNF-KRLMDSGNAQ--RMPF---------AGAC 219

Query: 87  --DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
              ++  E+   +             E  +    ++H K         +      +    
Sbjct: 220 IGTAFRNEIAPRSALIRVREFTLAEIEHFVNPNNKTHEKFNSVRDVEIWAWPRNLQANNE 279

Query: 145 PRFGVMRSREFLMK-----DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
               +        K         F         S    F  + +              ++
Sbjct: 280 DPIRMKIGEAVDAKVIDNQTLGYFIGRVALFLESVGVRFYRFRQHQSTEMAHYAQDCWDA 339

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDF--------MDFPIPSENTDFDDIISLNSIVEQ 251
             +      E + +AD     +    +          ++  P         ++   I + 
Sbjct: 340 ELLTSYGWIECVGIADRSAYDLTQHSNASKKDLCAREEYDEPRIERQLLRQLTKGLIGKT 399

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKGAD---- 306
           +        +  N    ++  E  R +    +   I    G + S+              
Sbjct: 400 FGKRAGEVMEYLNTAPAEAC-EAVRAAHAAGQPATITLPSGEEVSITAQMVSFEEKDVRV 458

Query: 307 -GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK---------- 355
            G  +   +     G  R++  ++E S+  +      +      S   +           
Sbjct: 459 TGYSYTPSVIEPSFGIGRILYCLLEQSYWVRRDDGGKNDKRAVFSFSPLLAPQKVALLPL 518

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                      +I   L   G  V  DD    IG ++A  D LG P  +    +   D  
Sbjct: 519 MVKPELLAIISEIRQELVMRGISVRVDDSSVTIGKKYARVDELGIPFAITCDFEG--DGS 576

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           V ++ R T  +  +   EV +      +  +P+
Sbjct: 577 VTLRERDTASQVRVPRSEVTSVVMELCNPLQPI 609



 Score = 43.6 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 1/76 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y   P       N+    R+         E+    L   +++  SG    +   M+R
Sbjct: 39  AGLYDLGPTMCAMKSNMLHFWRQHFVLEESMCEVDTTCLTPEEVFKASGHVTRFNDVMVR 98

Query: 96  LADRNDKAMIYGPTHE 111
                +         E
Sbjct: 99  DTVTGECIRADKFLEE 114


>gi|171321334|ref|ZP_02910293.1| histidyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
 gi|171093391|gb|EDT38579.1| histidyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
          Length = 446

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 61/439 (13%), Positives = 110/439 (25%), Gaps = 41/439 (9%)

Query: 32  IHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-D 87
           I + +  KG+   LP      +   A ++      G   +  P ++   L+    G   D
Sbjct: 8   IEKLAGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTD 67

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
              KEM    D  +   +                     + P   + I   FR E   R 
Sbjct: 68  IVEKEMYSFTDALNGENLTMRPENTAAVVRASIEHNMLYDGPKRLWYIGPMFRHERPQRG 127

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F      +       +      M           G+K                
Sbjct: 128 ---RYRQFHQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHR 184

Query: 208 HEFIVLADTGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            E I   +     +     +     P+   +T    +  +     +        S  H E
Sbjct: 185 VELIKYLEQFADVLDEDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGDESRAHFE 244

Query: 266 -------------KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                        K+   L          +        G + ++     +     +    
Sbjct: 245 GLQRLLLANNIPFKINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGK 304

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
              + G          +    D         V              +  R+       RL
Sbjct: 305 PTAACGWAMGIERILELLKEEDLAPEQEGVDVYVVHQG--------ETAREQAFIAAERL 356

Query: 373 SKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGI-- 425
              G DV +    D       SQ   AD  G    VI G + V++  V +K  R  G   
Sbjct: 357 RDTGLDVIFHCSADGASASFKSQMKRADASGAAFAVIFGEEEVANGTVGVKALRGAGEEG 416

Query: 426 ----REDMSLEEVINYASH 440
               ++ + +E +  +  +
Sbjct: 417 EKNAQQTVPVENLTEFLIN 435


>gi|120437853|ref|YP_863539.1| glycyl-tRNA synthetase [Gramella forsetii KT0803]
 gi|117580003|emb|CAL68472.1| glycyl-tRNA synthetase [Gramella forsetii KT0803]
          Length = 515

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 82/251 (32%), Gaps = 16/251 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       GE   +  K   +  +    +      +      +  A YA  
Sbjct: 260 FRMREFEQMEMQFFVRPGEELEWYEKWK-EIRLNWHRSLGLGEENYRLHDHEKLAHYANA 318

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +            E + + +R            ++S      +     +++   +    I
Sbjct: 319 AADIEFDFPFGFKELEGIHSRTDFDLKAHE---EHSGKKLRFYDPELKENYVPYVIETSI 375

Query: 320 GAMRVVAAVIE---------SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R+  +V+            +    +  P  +AP K +++ +   D    +  +KI  
Sbjct: 376 GLDRMFLSVLSSSLKEEDLGDGNTRTVLKLPAVLAPTKAAILPLVKKD-GLPELAQKIVD 434

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L      V +D+    IG ++   D  G PL + V    + D+ V ++ R +  ++ +S
Sbjct: 435 ELK-WDFKVQYDEKDA-IGRRYRRQDAAGTPLCITVDHDSLEDNAVTVRFRDSMEQKRVS 492

Query: 431 LEEVINYASHR 441
           +EE+       
Sbjct: 493 IEELDTLIRKE 503



 Score = 36.6 bits (83), Expect = 9.3,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 35/136 (25%), Gaps = 12/136 (8%)

Query: 20  IASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---S 70
           + SH      G I   S        +Y +   G +   N+         +     +    
Sbjct: 11  VISHAKE--YGYIFSSSEIYDGLSAVYDYGQNGAELKKNIKEYWWRSMTQL-HQNIVGID 67

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
              L     W  SG  D++   ++   D   +        +     + ++  +  +    
Sbjct: 68  AAILMHPTTWKASGHVDAFNDPLIDNKDSKKRYRADVLVEDYAEKLLQKAEKEITKAKKR 127

Query: 131 TFYQIQLKFRDELRPR 146
                      E  PR
Sbjct: 128 FGEDFDETMYRETNPR 143


>gi|290559795|gb|EFD93119.1| tRNA synthetase class II (G H P and S) [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 492

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 69/464 (14%), Positives = 140/464 (30%), Gaps = 75/464 (16%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + + P+G +  +N+    R+  N    +E+S   +    +   SG  D++  +M   
Sbjct: 37  SGFWEYGPVGFRIFNNLLTQWRKLVNSMNGVEISGSVVLPKKVLQASGHEDNFF-DMEIA 95

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
             +           EE         +     L +         +              F 
Sbjct: 96  CVKCGSVYRVDKLLEEKENSRSFEGLSEGEYLNYIKEYGIKCAKCGGELGEIKKFGTMFP 155

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-----------------S 199
           +K     D+       +   +F+ + R+F   G K   + A+                  
Sbjct: 156 LKIGE--DVQGYLRPEACQSIFLDFKRVFDTSGRKFPLVIAQVGKAFRNEISPRNNLIRQ 213

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD--------------------- 238
                +    F V  +    + +  + +      + N +                     
Sbjct: 214 REFYQNDIEIFFVEDNFELKEDYTVQIYDKEKNNTMNVNISAALSDGTIKNKVTAYALSK 273

Query: 239 ---------FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                    FD  +     + +  A YA  S     K  DS  E    + RGI       
Sbjct: 274 IYGFLLSIGFDKDVIRFRKLYEDKAFYAEESFDLEIKKGDSWVELVACNHRGI------- 326

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW----PDSVA 345
                S       KG +   +  ++    +G  R+   ++  S               ++
Sbjct: 327 --HDLSSYEKYGAKGMNIDSNIPKVFELSMGTDRLFYLLLLVSMKKDSERRWLSLDSKIS 384

Query: 346 PFKISLINIKAHDQVCRDACE----KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           PFK ++  + + D V   A E     +Y        D+ + D G  IG ++  A+ +G  
Sbjct: 385 PFKYAIFPLVSKDGVDSKASEIFENSVYRD------DILYSDSG-SIGKRYRKAEEIGVR 437

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           L   V  + + +  V I+   +  +  +S+   I+  +  F +N
Sbjct: 438 LAFTVDYESLENETVTIRESDSMKQFRISI-NYIDIITKEFESN 480


>gi|259046695|ref|ZP_05737096.1| histidine--tRNA ligase [Granulicatella adiacens ATCC 49175]
 gi|259036591|gb|EEW37846.1| histidine--tRNA ligase [Granulicatella adiacens ATCC 49175]
          Length = 438

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 69/420 (16%), Positives = 121/420 (28%), Gaps = 18/420 (4%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MI +  KG    LP   K    +    R         EM  P  +S DL+        D 
Sbjct: 1   MIQKP-KGTADLLPEELKIWHYIEETARIILGDYQFEEMRTPMFESYDLFSRGVGDTSDI 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   +  +         P+  Y +   FR E    
Sbjct: 60  VSKEMYDFYDKGDRHITLRPEGTAAIVRAYVENKLFGPEHKKPYKVYYMAPMFRYERPQS 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
               R R+F       F+ T   +      M    L+      ++ +             
Sbjct: 120 G---RLRQFHQLGVEVFESTNPATDVETIAMAWDLLKELGLSNMRLVINSLGKTADRIKY 176

Query: 207 SHEFIVLADT--GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
               I   +    E            P+   ++     I +     +     +  +  H 
Sbjct: 177 REALISYLEPFADELSEDSKNRLHKNPLRVLDSKDKRDIEIVKNAPRILEFLSDEARTHF 236

Query: 265 EKLFDSLP------ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           EK+   L       E      RG++     IF   T      + T     G+   +    
Sbjct: 237 EKVQQYLNALEIPFEIDETMVRGLDYYQDTIFEIMTDSKSFGAKTTICGGGRYDGLVQEL 296

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            G         +               V   +   + I    +   +   K+   L + G
Sbjct: 297 DGPETPGFGFGLGIERLVLLMKDEQVEVPELQELDVYIVGLGEATEEEVLKLSISLRQQG 356

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V  D  G +   QF  A   G  + + +G + +   +V +K   TG    ++L+E+  
Sbjct: 357 YSVDRDFFGRKAKPQFKNAQKYGAKVVITLGEEELETKQVPVKVMKTGKEVKINLQELYE 416


>gi|223940749|ref|ZP_03632585.1| glycyl-tRNA synthetase [bacterium Ellin514]
 gi|223890568|gb|EEF57093.1| glycyl-tRNA synthetase [bacterium Ellin514]
          Length = 596

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 56/396 (14%), Positives = 122/396 (30%), Gaps = 43/396 (10%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +   +  +    + A +   T + +          S + +PF   Q+   FR+E+ PR  
Sbjct: 203 FKTYVGPVESEENVAYLRPETAQAIFAQFKNVLETSRQKVPFGIAQVGKAFRNEVTPRNF 262

Query: 149 VMRSREFLMKDAYSFDLTPEGSK-------------HSYNKMFVSYLRIFHRLGLKSIPM 195
             RSREF   +   F    E  +             H          +++H+  ++    
Sbjct: 263 TFRSREFEQMELEFFIKPDEAIEAISGTVAKPETKGHPGEPQSNWGWQMWHQYWVEERIK 322

Query: 196 RAESGPIGGDLSHEFIVLADT-GETQVFCSKDFMDFPI---PSENTDFDDIISLNSIVEQ 251
             ++  +      E+    +               FP      E         L+     
Sbjct: 323 FYDNIGLPRTTLEEYWQKPEELAHYARATVDLLFKFPFGTQELEGIAARSDFDLSQHERF 382

Query: 252 WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF---GTKYSLPMSATFKGADG- 307
              P     D             K+   +        Y    G           + A+G 
Sbjct: 383 SRKPMGVFDDDLRAAWAKLDDVKKQELTKRYYEARARYLTKTGMDSEKAAKKAKEDAEGL 442

Query: 308 --KDHYVQMGSYGIGAMRVVAAVIESSH-------------DGKGIIWPDSVAPFKISLI 352
               +   +     G  R++ A+I +++                 + +   VAP K++++
Sbjct: 443 AKGQYIPHVIEPSAGVDRLILALISNAYAEEEVTDDKGKAETRVVMRFHPRVAPIKVAVL 502

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +  +         +++  L +   + F+DD G  IG ++   D  G P  V +    + 
Sbjct: 503 PLLKNKPELVAKSREVFELLRRE-MNAFYDDGGA-IGRRYRRQDEAGTPFCVTIDFDTLG 560

Query: 413 D-----SKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +     + V ++ R T  +  + ++E++     R  
Sbjct: 561 EKPELLNTVTLRDRDTMQQTRVKIDELLPMLLQRVR 596



 Score = 45.1 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 28 RTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMSVPTLQSADL 79
          R G + Q S       G + + PLG +   NV  +      R     + +    + S D+
Sbjct: 19 RRGFVFQSSEIYGGINGFWDYGPLGAELKRNVKELWWTSMTRFREDVVGLEATIIMSPDI 78

Query: 80 WVESGRYDSYGKEMLRL 96
          W  SG  D++   M   
Sbjct: 79 WRASGHVDTFADMMREC 95


>gi|87123086|ref|ZP_01078937.1| histidyl-tRNA synthetase [Synechococcus sp. RS9917]
 gi|86168806|gb|EAQ70062.1| histidyl-tRNA synthetase [Synechococcus sp. RS9917]
          Length = 432

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 58/419 (13%), Positives = 113/419 (26%), Gaps = 26/419 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP   +    V A++R +  R    E+  P L+  +L+        D  GKEM  
Sbjct: 9   GMVDLLPEQTRRWQAVEAVVRAQMQRWCCEEIRTPLLEVTELFARGIGEGTDVVGKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR D++    P     +      +    + +   +Y     FR E        R R+F
Sbjct: 69  FIDRGDRSCTLRPEGTASVVRAALQNGLLAQGVQRLWYG-GPMFRYERPQAG---RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                    ++   S      +    L      GL        +           +   +
Sbjct: 125 HQIGVEWLGVSTAASDAEVIALAWDLLAELGVTGLALEVNSLGTPEDRKLYRSTLVAWLE 184

Query: 216 TGETQVFCSKD---------FMDFPIPSENTDFDDIISLNS------IVEQWTAPYAATS 260
                +               +D   P       D  +L                 A   
Sbjct: 185 KRSDALDPDAQQRLQTNPLRILDSKHPQTKAVLQDAPTLEQSLAPSSRARFEAVLEALQD 244

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                +    L                   G + ++     + G   +       + G  
Sbjct: 245 LAIPVQRNPHLVRGLDYYGHTAFEITSNQLGAQATVCGGGRYDGLVQQLGGPPTPAIGWA 304

Query: 321 -AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
             M  +  V+E++           +   +  +  +    +        +   L + G  V
Sbjct: 305 LGMERLLLVLEAAAQVDPAGRAAQLVRAQGPVAYVVHRGEAAARQALVLCRGLRQRGVAV 364

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLEEV 434
             D  G     QF  AD  G    +++G   V    V++K          +E++ + ++
Sbjct: 365 ELDATGSAFAKQFKRADRSGADWALVLGDAEVERGVVKLKPLQAEVGETAQEELPVADL 423


>gi|184155308|ref|YP_001843648.1| histidyl-tRNA synthetase [Lactobacillus fermentum IFO 3956]
 gi|227514593|ref|ZP_03944642.1| histidine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
 gi|260662178|ref|ZP_05863074.1| histidyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
 gi|229558691|sp|B2GBY6|SYH_LACF3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|183226652|dbj|BAG27168.1| histidyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
 gi|227087004|gb|EEI22316.1| histidine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
 gi|260553561|gb|EEX26453.1| histidyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
 gi|299783163|gb|ADJ41161.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
           [Lactobacillus fermentum CECT 5716]
          Length = 431

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 73/419 (17%), Positives = 123/419 (29%), Gaps = 28/419 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP   +    V    R+     G  E+  P  +S D++  S     D   KEM  
Sbjct: 8   GTADILPGDSQTWQYVEGQARQIFKTYGYQEIRTPLFESYDIFSRSAGDTSDVVTKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   F  +         P+  Y I   FR E        R R
Sbjct: 68  FKDKGDRHIALRPEGTAGVVRAFVENKLYGPEFNKPYKVYYIGPMFRYERPQSG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           EF      +F                  LR F +LGL  + +   S       ++    L
Sbjct: 125 EFHQIGVEAFGADNPAVDVEV---ITMALRFFKKLGLSDLRVAVNSLGDQESRANYRQAL 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT----------APYAATSDVH 263
            D    +    +   D     E      + S +   +Q+            P AA     
Sbjct: 182 IDY--LKPHYDELSEDSKERLEKNPLRVLDSKDERDQQFVENAPSILDYLTPAAAERFDQ 239

Query: 264 NEKLFDSLPENKRV---SARGIEV--GHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +++ DSL  +  V     RG++     IF       SL    T     G+   +     
Sbjct: 240 VKEMLDSLGIDYVVDATMVRGLDYYNHTIFEVMVKAKSLGHGYTTICGGGRYSGLVEELG 299

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G     V   +               +       + +    +       ++       G 
Sbjct: 300 GPDEPGVGFGIGLERLILLLGDEGVELPTEDGLDVYVVGIGEATNLESFRLVTAARDAGL 359

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
               D +  +  +QF  A   G  + + VG + + +  V  K   TG    + L + + 
Sbjct: 360 VAERDYLNRKPKAQFKTAAKEGAKVTLTVGQREIEEGTVHFKVMATGKEVSVPLADCLA 418


>gi|148244761|ref|YP_001219455.1| histidyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
 gi|166228628|sp|A5CWE8|SYH_VESOH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|146326588|dbj|BAF61731.1| histidyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
          Length = 422

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 58/419 (13%), Positives = 124/419 (29%), Gaps = 24/419 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP       ++   I +     G   +  P ++  D +  +  G  D   KEM  
Sbjct: 10  GMNDLLPKNSALWLSLEKTIFDLFITYGYQNIRTPIVEKTDTFCRAIGGDTDIVEKEMYS 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             + + +++   P        +   H     ++   FY     + +   + R R      
Sbjct: 70  WKETSGESLSLRPEGTAGCVRMMIEHNLPRESIQKVFYQGAMFRHERPQKGRYRQFHQVG 129

Query: 153 REFLMKDAYSFDLTPEGSKH--SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            E         D       H         + +   + LG   +        +     H+ 
Sbjct: 130 LEIFGVFNAKADAELMIIMHALWQTIGLKNIVLEINTLGSNEVRNAYRKILVAYFNQHKN 189

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ-----WTAPYAATSDVH-N 264
            +  D  +         +D    + ++   D   L   +++     +    +    ++  
Sbjct: 190 QLNEDGLKQLKTNPFRILDSKNKAIHSLISDAPKLMDYLDKKSIQHFKQFKSYLDALNIT 249

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             +  SL        R +        GT+ ++     + G   K       + G+     
Sbjct: 250 YVINTSLVRGLDYYNRTVFEWTTTDLGTQSTICAGGRYDGLIEKMGGTPTPAVGLAIGLE 309

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW--D 382
              ++  + +        S+          K            ++  L      V    D
Sbjct: 310 RLVLLLEAQNLISTKSTLSIYLIAFG----KKEQIKSIQIANVLHDELPN----VILYND 361

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYASH 440
                  SQF  AD       +I+G + ++++++ IK  R  G ++ M+LEE I Y   
Sbjct: 362 LTLGSFKSQFEKADKAKANFALILGEQELNNNQISIKPLRNQGTQQTMNLEEAIKYFKE 420


>gi|121998567|ref|YP_001003354.1| histidyl-tRNA synthetase [Halorhodospira halophila SL1]
 gi|189082299|sp|A1WXZ0|SYH_HALHL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|121589972|gb|ABM62552.1| histidyl-tRNA synthetase [Halorhodospira halophila SL1]
          Length = 423

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 115/426 (26%), Gaps = 36/426 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G    LP          + IR      G  E+ +P L+  +L+  S G   D   KEM  
Sbjct: 11  GFSDILPEESPLWQYAESAIRRVLESYGYREIRLPVLERTELFSRSIGEVTDIVEKEMYT 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P                +   P  +Y     FR E   +    R R+F
Sbjct: 71  FDDRNGDSVTLRPEGTAGCVRAGIQSGLLHNAEPRLWYA-GPMFRHERPQKG---RLRQF 126

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD---------- 205
               A  F +          +M +   R+   LGL  + ++  S                
Sbjct: 127 HQVGAEVFGIPEP---ELDAEMIIMTARMLRELGLSDVRLQLNSLGTPESRAAHREQLVA 183

Query: 206 --LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
               HE  +  D             D   P       D   L   ++  +A +       
Sbjct: 184 YLRRHEDRLDEDARRRLETNPLRIFDSKNPQVQQVMADAPRLMDCLDSVSAEHFTVVRNL 243

Query: 264 NE------KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            E      ++  SL        R +        G + ++     F G   +       + 
Sbjct: 244 LERAGVEYEVNPSLVRGLDYYTRTVFEWVTDRLGAQGTVCAGGRFDGLVEQLGGRPTPAI 303

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G          +       G            +            +  E +   L     
Sbjct: 304 GFALGLERLVALLEDQGTPGQGGAPHAYLVVATEAGAG------LEMAEALRDALPA--L 355

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVIN 436
            V     G    +Q   AD  G  + +I+G    +   + IK       ++ + L++ + 
Sbjct: 356 RVQMHAGGGGFKAQLKRADRSGARVALILGDDEQAAGALTIKDLRGEDGQQRLPLDDAVT 415

Query: 437 YASHRF 442
           Y     
Sbjct: 416 YLRGLI 421


>gi|223933432|ref|ZP_03625418.1| histidyl-tRNA synthetase [Streptococcus suis 89/1591]
 gi|223897926|gb|EEF64301.1| histidyl-tRNA synthetase [Streptococcus suis 89/1591]
          Length = 427

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/420 (14%), Positives = 120/420 (28%), Gaps = 38/420 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R    +    E+  P  +  ++   S     D   KEM    D+ ++ +   
Sbjct: 20  WQYVENFTRSIFKQYNYAEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGERHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPAKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-----TGETQ 220
               +     +        F  LG+K I +   S       +     L D       +  
Sbjct: 137 NNPATD---VETIAMAYHFFEELGIKDIRLHLNSLGNPESRAAYRQALIDYLTPLKDQLS 193

Query: 221 VFCSKDFMDFPIPSENTDFDDIIS--------LNSIVEQWTAPYAATSDVHNEKLFDSLP 272
               +   + P+   ++   +           L+ + E+ TA + A   + +      + 
Sbjct: 194 KDSQRRLEENPLRVLDSKEKEDKIAVENAPSILDYLDEESTAHFEAVKTMLDSLGIAYVI 253

Query: 273 ENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           +   V         IF F     G   ++     + G        +  ++G G       
Sbjct: 254 DTNMVRGLDYYNHTIFEFMTEVGGNDLTICAGGRYDGLVTYFGGPETPAFGFGMGIERLI 313

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++              +       I I    Q        +   + K G     D +  +
Sbjct: 314 LVL-------EKQGIELPLDTQLDIYIAVLGQEANGGALDLVQAIRKQGFRAERDYLDRK 366

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---INYASHRFSN 444
           + +QF  AD+ G    + +G   +   +V +K+  T  + + SLE +             
Sbjct: 367 LKAQFKSADVFGAKAIITLGGSEIESGQVVVKNNQTRSQVETSLEALKTDFASILEELEK 426


>gi|293394876|ref|ZP_06639166.1| histidine-tRNA ligase [Serratia odorifera DSM 4582]
 gi|291422627|gb|EFE95866.1| histidine-tRNA ligase [Serratia odorifera DSM 4582]
          Length = 424

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/421 (14%), Positives = 125/421 (29%), Gaps = 29/421 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+  +LP        +   +++     G  E+ +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDYLPEDTALWQRIEGTLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H   Y      +Y     FR E   +    R R+F
Sbjct: 70  FDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYI-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHS----YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
               A  F L              + + +     H     +     E+     D    F+
Sbjct: 126 HQLGAEVFGLQGPDVDAELILLTARWWKALGIAEHVKLELNSIGSLEARANYRDALVAFL 185

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                      C +     P+   ++    + +L +   + +    A S  H + L + L
Sbjct: 186 EQH-VELLDDDCKRRMYSNPLRVLDSKNPQVQALLNDAPRLSEYLDADSKAHFDGLCELL 244

Query: 272 --------PENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                      + V         +F       G + ++     + G    +      +  
Sbjct: 245 TLAGIPYTINERLVRGLDYYNRTVFEWVTSSLGAQGTVCAGGRYDGLV--EQLGGRATPA 302

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G    +  ++             +     +            R   E +     ++   
Sbjct: 303 VGFAMGLERLVLLVQAVNPDFKAPATIDIYVISSGAGTQSAAMR-LAEAVRDAAPQLKLM 361

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +   G     Q   AD  G  + +I+G   V+  +V +K   +G +E ++  E+    
Sbjct: 362 TNY--GGGNFKKQITRADKWGARVALILGENEVAAQQVVVKDLRSGEQETLAQSELAARL 419

Query: 439 S 439
           +
Sbjct: 420 A 420


>gi|156846538|ref|XP_001646156.1| hypothetical protein Kpol_1039p49 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116829|gb|EDO18298.1| hypothetical protein Kpol_1039p49 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 663

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 87/294 (29%), Gaps = 19/294 (6%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                     +         +     +                 +    + E +V+    
Sbjct: 363 MANEMAHYAADCWDAELKTSYGWIECVGCADRSAY------DLTVHSIKTKEKMVVRQKL 416

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           ET V  ++  +D    ++             VE +    +      N +   +  +NK V
Sbjct: 417 ETPVEVTQWEIDL---TKKLFGPKFRKDAPKVEAFLLGMSQEELADNAEKLKA--DNKIV 471

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                  G +       ++           ++    +     G  R++ +V E S+  + 
Sbjct: 472 LKVDGVEGDVELDSNFVTIEKRTKV--EHVREFVPNVIEPSFGIGRIIYSVFEHSYWNRP 529

Query: 338 IIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                SV  F   +   K      ++ +       ++   L K       DD G  IG +
Sbjct: 530 EDTARSVLSFPPLVAPTKVLLVPLSNHKDLAPITSQVSKILRKEKIPFKVDDSGVSIGKR 589

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +A  D LG P  V +      D  V ++ R +  +   S+E+VI        NN
Sbjct: 590 YARNDELGTPFGVTIDFDSTKDGSVTLRERDSTKQVRGSVEDVIKAIRDITYNN 643



 Score = 48.2 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     NV  I R+        +E+    L   ++   SG  D +   M +
Sbjct: 41  SGLYDYGPPGCAFQANVVDIWRKHFILEEDMLEVDCTMLTPHEVLKTSGHVDKFSDWMCK 100


>gi|146304959|ref|YP_001192275.1| glycyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
 gi|145703209|gb|ABP96351.1| glycyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
          Length = 571

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 7/143 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQV 360
             G   Y  +     G  R +   + S++    D   +  P  +AP+++++  +   D++
Sbjct: 419 EHGIKFYPHVVEPSFGVERCLYLSVLSAYREKKDRVVLALPKDLAPYQVAVFPLLERDEL 478

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +    +IY  LS    +V +DD G  IG ++A  D +G P  V V  + +SD  V I+ 
Sbjct: 479 IK-KAREIYNLLSGK-YEVLFDDAG-SIGKRYARVDEIGVPYAVTVDPQTLSDDSVTIRD 535

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R +  +  +   ++ +     FS
Sbjct: 536 RDSWSQIRIKTSDLESVMDKLFS 558



 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAI---EMSVPTLQSADLWVESGRYDSYGKEM 93
            G+Y   P+G +  + +    R+      +    E+  P +  + +   SG  +++   +
Sbjct: 28  AGLYDIGPVGARIKNKIINTWRKIFVEENSEFVVEIETPMITPSKVLEASGHVENFTDPI 87

Query: 94  LRLADRNDKAMIYGPTHEEV 113
           +     +          EE+
Sbjct: 88  VECTKCHKI-YRADHLVEEM 106


>gi|304311809|ref|YP_003811407.1| Histidyl-tRNA synthetase [gamma proteobacterium HdN1]
 gi|301797542|emb|CBL45762.1| Histidyl-tRNA synthetase [gamma proteobacterium HdN1]
          Length = 425

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/424 (13%), Positives = 122/424 (28%), Gaps = 27/424 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP    A  ++   +R      G  E+ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPSQSVAWRHLEDTVRNLLTGYGYGEIRLPIVEYTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P                Y  +   +Y     FR E   +    +  + 
Sbjct: 70  FEDRNGESLTLRPEGTAGCVRAGEEQGLLYNQVQRLWYA-GPMFRYEKPQKGRYRQFHQI 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH-------RLGLKSIPMRAESGPIGGDLSH 208
            ++         +           + L I          LG  +   R  +  +     H
Sbjct: 129 GVETFGMVGPDIDAELIVLTAQLWAALGISELVRLQLNSLGTSAERARYRTDLVAWLEQH 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW--TAPYAATSDVHNE- 265
              +  D+           +D   P+     D   SL   +E    T      + +    
Sbjct: 189 REQLDEDSQRRLTSNPLRILDSKDPATQAILDQAPSLADYLEDESRTHFDGLKAMLDAAG 248

Query: 266 ---KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              ++   L        + +        G + ++     + G   +       + G    
Sbjct: 249 VRYEINPRLVRGLDYYGKTVFEWVTTALGAQGTVCAGGRYDGLVEQLGGRATPAVGFAMG 308

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVF 380
                ++  + D        +    +     I +     +     +  RL     G  + 
Sbjct: 309 VERLVLLLETCD------KVAHLNLQPHAYFIVSEGLEAQSLA--MAGRLRAALPGLRLT 360

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYAS 439
               G +   Q   AD  G  + +I+G    +  ++ IK+ R    +E ++   V+    
Sbjct: 361 MHCGGGKFKKQVKKADESGARVALILGENEAASGELAIKYMREDRPQETITEAAVVERLL 420

Query: 440 HRFS 443
               
Sbjct: 421 ALMQ 424


>gi|301767770|ref|XP_002919302.1| PREDICTED: glycyl-tRNA synthetase-like [Ailuropoda melanoleuca]
          Length = 737

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 75/283 (26%), Gaps = 24/283 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 427 FRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKRLKE 486

Query: 241 --------------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                          I        +    Y A  D       + L   K       E G 
Sbjct: 487 PKTVNVVQFEPNKGAIGKAYKKDAKLVLEYLAVCDECYITEMEKLLNEKGEFTIETE-GK 545

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            F              K    ++    +     G  R++  V E +   +      +   
Sbjct: 546 TFQLTKDMVSVNRFQ-KTLHVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFS 604

Query: 347 FKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           F   +   K      + +Q      +++   L++ G     DD    IG ++A  D +G 
Sbjct: 605 FPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGV 664

Query: 401 PLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHR 441
              + +    V+       ++ R +  +    + E+ +     
Sbjct: 665 AFGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPSVVCDL 707



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 143 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 202

Query: 96  LADRNDK 102
                + 
Sbjct: 203 DVKNGEC 209


>gi|281354615|gb|EFB30199.1| hypothetical protein PANDA_007924 [Ailuropoda melanoleuca]
          Length = 737

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 75/283 (26%), Gaps = 24/283 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 427 FRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKRLKE 486

Query: 241 --------------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                          I        +    Y A  D       + L   K       E G 
Sbjct: 487 PISFNVVQFEPNKGAIGKAYKKDAKLVLEYLAVCDECYITEMEKLLNEKGEFTIETE-GK 545

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            F              K    ++    +     G  R++  V E +   +      +   
Sbjct: 546 TFQLTKDMVSVNRFQ-KTLHVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFS 604

Query: 347 FKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           F   +   K      + +Q      +++   L++ G     DD    IG ++A  D +G 
Sbjct: 605 FPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGV 664

Query: 401 PLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHR 441
              + +    V+       ++ R +  +    + E+ +     
Sbjct: 665 AFGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPSVVCDL 707



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 143 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 202

Query: 96  LADRNDK 102
                + 
Sbjct: 203 DVKNGEC 209


>gi|312865842|ref|ZP_07726064.1| histidine--tRNA ligase [Streptococcus downei F0415]
 gi|311098717|gb|EFQ56939.1| histidine--tRNA ligase [Streptococcus downei F0415]
          Length = 426

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 63/405 (15%), Positives = 114/405 (28%), Gaps = 31/405 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  + RE   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVENVARETFKKYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   F  +         P   Y I   FR E        R REF       F  
Sbjct: 80  PEGTAPVVRSFVENKLFAPEVQKPVKMYYIGSMFRYERPQAG---RLREFHQIGVECFGS 136

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--------------GPIGGDLSHEF 210
             P     +    +  +  +  R     +     +               P+   LS + 
Sbjct: 137 SNPASDVETIAMAYQLFKELGIREVTLHLNSLGNTSSRLAYRQALIDYLTPMKDSLSKDS 196

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
               +    +V  SK+  D     +    +    L+ + E+  A + A   +        
Sbjct: 197 QRRLEENPLRVLDSKEKED-----QVAVENAPSILDYLDEESQAHFEAVRQMLESLAIPY 251

Query: 271 LPENKRVSARGIEVGHIFYFGTKY-SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           + +   V         IF F  K     ++    G          G    G    +    
Sbjct: 252 VIDTNMVRGLDYYNHTIFEFMAKVGDSDLTICAGGRYDGLVDYFDGPETPGFGFGLGLER 311

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                 K  I           +  +    Q       ++   L   G     D +G +I 
Sbjct: 312 LLLILDKQGISLPVEEGLDAYIAVLG---QAANAKALELVQALRAQGFKAERDYLGRKIK 368

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           +QF  AD       + +G   +   ++ +K+  T    + SL+ +
Sbjct: 369 AQFKSADAFKAKTLITLGESELESGQLTVKNNQTRQELETSLDTI 413


>gi|238503462|ref|XP_002382964.1| glycyl-tRNA synthetase [Aspergillus flavus NRRL3357]
 gi|317138713|ref|XP_001817091.2| glycyl-tRNA synthetase 1 [Aspergillus oryzae RIB40]
 gi|220690435|gb|EED46784.1| glycyl-tRNA synthetase [Aspergillus flavus NRRL3357]
          Length = 708

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
            + +++   +     G  R++ + +E  +  +       V  F  ++   K      ++ 
Sbjct: 543 ENVREYTPNVIEPSFGIGRILYSTLEHVYWSREGDEARGVLSFPPAIAPTKVLIVPLSNH 602

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              R    ++  ++ ++G     DD    IG ++A  D LG P  + V  + V D+   +
Sbjct: 603 ASFRPLSHRLMMKMRRMGISNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTL 662

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R +  +   S +E++        
Sbjct: 663 RDRDSTKQVRASEDEILQALKSLVE 687



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G   ++N+  + R+        +E+    L   ++   SG  + +   M +
Sbjct: 90  SGLYDYGPPGCALINNIVDLWRKHFVLEEDMLEVDCTMLTPHEILKTSGHVEKFADWMCK 149


>gi|85084305|ref|XP_957291.1| glycyl-tRNA synthetase 1 [Neurospora crassa OR74A]
 gi|28918380|gb|EAA28055.1| glycyl-tRNA synthetase 1 [Neurospora crassa OR74A]
          Length = 663

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/294 (11%), Positives = 92/294 (31%), Gaps = 21/294 (7%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
            ++  + + +              ++  +      E +  AD     +         P+ 
Sbjct: 346 VDQSKIRFRQHMGNEMAHYACDCWDAELLTSSGWVECVGCADRSAYDLTVHAKKTGAPLV 405

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------------PENKRVSARG 281
              T     I      E  +  +  T     + +  ++             E K      
Sbjct: 406 VRETLETPEIVEKWEPEINSKKFGPTFRKDAKTVEAAILALPQEELAKLAEELKTNGKIV 465

Query: 282 IEVGHIFYFGTKYSLPMSA---TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           ++V  +     + S  + A        + +++   +     G  R++ +++E ++  +  
Sbjct: 466 VDVPGVGDGKVEVSKDLVAIEWKKHTINIREYTPNVIEPSFGIGRILYSLLEHNYWVREG 525

Query: 339 IWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                V  F  ++  +K      +          ++  +L  VG     DD    IG ++
Sbjct: 526 DEARGVISFPPAVAPVKVLIVPISSKAEFAPHVRRLSQKLRSVGISSRVDDSSASIGRRY 585

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           A  D LG P  + +  + + D    ++ R +  +     E++++        ++
Sbjct: 586 ARNDELGTPFGLTIDFQTLQDGTFTLRERDSTRQVRAEEEKIVDAIKALVEGSK 639



 Score = 53.2 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHS-------KGIYSWLPLGQKALDNVNAIIREEQN 62
            L+  P D    + + MLR  M    S        G+Y + P G     N+  I R+   
Sbjct: 7   TLKGQPLD--KGALESMLRRRMFFAPSFDIYGGVAGLYDYGPPGCALQANIIDIWRKHFV 64

Query: 63  -RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
                +E+    L   D+   SG  D +   M +     D
Sbjct: 65  LEEDMLEVDCTALTPHDVLKTSGHVDKFADWMCKDPKNGD 104


>gi|240949090|ref|ZP_04753438.1| histidyl-tRNA synthetase [Actinobacillus minor NM305]
 gi|240296485|gb|EER47117.1| histidyl-tRNA synthetase [Actinobacillus minor NM305]
          Length = 424

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 65/416 (15%), Positives = 123/416 (29%), Gaps = 33/416 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               V   +R      G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWVETKVRNVLASYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P                Y N    +Y +   FR E   +    R R+F       F + 
Sbjct: 80  RPEGTAGCVRAAIERGWIYNNEQRLWY-MGPMFRHERPQKG---RYRQFHQAGVEVFGIP 135

Query: 167 PEGSKHSYNKMF----------VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                     +                  + +G         S  +     H+ ++  + 
Sbjct: 136 NPEIDAELIILTARLWKALGIDQHVSLQLNSIGSLEARANYRSALVAFLEQHQSLMSDEE 195

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA------TSDVHNEKLFDS 270
            E  V      +D    +     +D   L   +++ +  + A       +     ++   
Sbjct: 196 KERLVKNPLRILDTKNQALQEVLNDAPKLLDYLDEESREHFAQLCSLLDAMGIQYEVNPK 255

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAV 328
           L        + +        G + ++     + G       H  Q   + +G  R+V  V
Sbjct: 256 LVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATQGVGFAMGLERLVLLV 315

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E + D       D    +      +           E + + L      V     G + 
Sbjct: 316 QEVNKDVPVAKAVDVYIVYSGEGATLN-----AFQIAETLRSELPT--LRVMTHCSGGKF 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRFS 443
             QF  AD L     +++G   V++  V IK  L+G  +  +    ++     RFS
Sbjct: 369 QKQFKRADKLEAEFALVIGESEVAEKTVVIKDLLSGTEQITVPQTALVAELQKRFS 424


>gi|322707106|gb|EFY98685.1| glycyl-tRNA synthetase 1 [Metarhizium anisopliae ARSEF 23]
          Length = 662

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/290 (10%), Positives = 84/290 (28%), Gaps = 24/290 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++  +      E +  AD     +         P+       +
Sbjct: 351 FRQHMANEMAHYACDCWDAELLTSSGWVECVGCADRSAYDLSVHAKKTGAPLVVRERLEE 410

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL----PENKRVSARGIEVGHIFYFGTKYSL 296
            ++     V+     +        + +  +L     E +   A+ ++             
Sbjct: 411 PLVIEEWQVDIEKKKFGPLFKKDAKTVETALLATSQEEREKLAKQLKDSGKISLDVAGVG 470

Query: 297 PMSATF-----------KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                            +  + ++    +     G  R++ ++IE +   +G    D   
Sbjct: 471 DGKVEVGSDTLKIEFRKRIENTREFTPNVIEPSFGIGRILYSLIEHNFWTRGSDGGDEAR 530

Query: 346 PFKISLINIKA---------HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                   +           ++   R   +K+  +L   G     DD    IG +++  D
Sbjct: 531 GVLSFPPTVAPTKVLIVPLSNNVQFRPIIKKLSQQLRLAGISSRIDDSSASIGKRYSRND 590

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            LG PL + V  + + D  + ++ R +  +      ++++        ++
Sbjct: 591 ELGTPLGITVDFQTLQDDTITLRDRDSTAQVRAEESKILDAIKALVDGSK 640



 Score = 50.9 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHS-------KGIYSWLPLGQKALDNVNAIIREEQN 62
            L+  P D  +     MLR  M +  S        G+Y + P G     N+  + R+   
Sbjct: 7   TLKGQPLDKPVLDA--MLRRRMFYTPSFEIYGGVGGLYDYGPPGCSLQANIVDLWRKHFI 64

Query: 63  -RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
                +E+    L   D+   SG  D +   M +     +
Sbjct: 65  LEEDMLEVDCTVLTPHDVLKTSGHVDKFADWMCKDPKNGE 104


>gi|68475164|ref|XP_718300.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
 gi|68475357|ref|XP_718201.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
 gi|46439958|gb|EAK99269.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
 gi|46440061|gb|EAK99371.1| potential proline-tRNA synthetase fragment [Candida albicans
           SC5314]
          Length = 411

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 15/159 (9%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK----GADGKDHYVQMGSYGIGA 321
           ++     E K  ++  IEVGH FY G KYS P++            +   + MG YGIG 
Sbjct: 189 EICGHCEEGKLSASSAIEVGHTFYLGDKYSKPLNLEVDVPTSNNSIEKQRIMMGCYGIGI 248

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-----------VCRDACEKIYA 370
            R++AA+ E + D KG+ WP S+AP++++++ +    Q             +D  ++IY 
Sbjct: 249 SRIIAAIAEINRDEKGLKWPRSIAPWEVTVVEVSKQKQLKNVNDNNHHNNPQDNFQEIYN 308

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            L++   D   D+  + +G +   +DLLG PL +I+G++
Sbjct: 309 ILNQANIDYRLDNRSDSMGKKLKQSDLLGIPLSIILGNQ 347



 Score = 37.8 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 2/95 (2%)

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           YSFDL    +  +Y K+  +Y +IF  LG+  +   A+SG IGG LSHE+  L  +GE  
Sbjct: 3   YSFDLNESEAMKTYEKVVGAYHKIFQDLGIPYVKAEADSGDIGGSLSHEWHYLNSSGEDT 62

Query: 221 VFCSKDFMDFP--IPSENTDFDDIISLNSIVEQWT 253
           VF   +  +      + +   +   ++   V+ +T
Sbjct: 63  VFECNECHNVSNMEKALSYPKEIDETIEVSVKYFT 97


>gi|254468986|ref|ZP_05082392.1| histidyl-tRNA synthetase [beta proteobacterium KB13]
 gi|207087796|gb|EDZ65079.1| histidyl-tRNA synthetase [beta proteobacterium KB13]
          Length = 421

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 63/414 (15%), Positives = 127/414 (30%), Gaps = 15/414 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y  LP  QK          +  +R    E+ +P +++ DL++ S   + D   KEM  
Sbjct: 9   GFYDVLPEKQKYWRFFYETAYQVLDRFAYDEIKLPIVENTDLYIHSVGEQTDIVEKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     N P   +     FR E   +    R R+F
Sbjct: 69  WQDNLNNDKLTLRPEGTAGCVRAVIENNLTYNGPIRLFYQGPMFRHENVQKG---RQRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +F  +          +  S  +      ++                 E I   +
Sbjct: 126 NQLGIEAFGFSEPLLDAEVICLLDSLWKNLGLKNIELQINNIGDPEERAVYRQELIKYFE 185

Query: 216 T--GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP- 272
           +   E      +     P+   ++    +  L     ++    +A S  H E++   L  
Sbjct: 186 SHQDELDEDAKRRLYTNPMRILDSKNPKMQGLIDKAPKFLDQNSAESAKHFEQVTQYLDQ 245

Query: 273 -----ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                +  +   RG++  +   F    S   S       G+  Y+     G         
Sbjct: 246 SNIAYKINKNLVRGLDYYNRTVFEFVTSDLGSQGTIAGGGRFDYLIQSINGKEIPAFGVG 305

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +             +S    K  +  +    +   +    I  +L      V  +     
Sbjct: 306 IGIERIILLLEELNNSSFDIKPQVYVLSLG-ENVDNYAFNISNQLRNSNISVCMNVGKNS 364

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYASH 440
             SQ   AD  G    +I+G   V++  V+IK  R    +E+++ ++++++ + 
Sbjct: 365 FKSQMKKADKSGAQFAIIIGDNEVNNDSVQIKLLRQELSQEEINKKDIVHFITQ 418


>gi|29654551|ref|NP_820243.1| histidyl-tRNA synthetase [Coxiella burnetii RSA 493]
 gi|154706491|ref|YP_001424685.1| histidyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
 gi|161831041|ref|YP_001597099.1| histidyl-tRNA synthetase [Coxiella burnetii RSA 331]
 gi|39932162|sp|Q83C80|SYH_COXBU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189082290|sp|A9KFU6|SYH_COXBN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189082291|sp|A9NDV9|SYH_COXBR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|29541818|gb|AAO90757.1| histidyl-tRNA synthetase [Coxiella burnetii RSA 493]
 gi|154355777|gb|ABS77239.1| histidyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
 gi|161762908|gb|ABX78550.1| histidyl-tRNA synthetase [Coxiella burnetii RSA 331]
          Length = 421

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 130/412 (31%), Gaps = 39/412 (9%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +    R   +     E+  P ++   L+  +     D   KEM    DRN  ++   P  
Sbjct: 25  LENACRSVVSAYHYREIRFPVVEQTALFKRTIGEATDIVEKEMYTFTDRNGDSLTLRPEG 84

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
                     +   Y  +   +Y     FR E   +    R R+F      ++ +     
Sbjct: 85  TAGCVRAGIQNGLFYNQIQRLWYL-GPMFRHERPQKG---RYRQFYQLGVETYGMAGAPI 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMR-------AESGPIGGDLSHEFIVLADTGETQVFC 223
           +     M    LR++  LGL+S            +S          ++   +  E     
Sbjct: 141 EAELIFMC---LRLWKALGLESCIHLELNTLGTLDSRNAYRQALVTYLQSREK-ELDEDS 196

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR------V 277
            +     P+   ++   D+  L +   +       TS  H ++L   L + +        
Sbjct: 197 RRRLHTNPLRILDSKNPDLQPLLAEAPKLIDYLDETSRRHFDQLRSLLDQAEVPFIVNPT 256

Query: 278 SARGIEV--GHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             RG++     +F       G + ++     +             + G  A      ++ 
Sbjct: 257 LVRGLDYYTHTVFEWVTDQLGAQGTVCAGGRYDNLVELLGGKSTPAAGFAAGLERLVLLL 316

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                        V     ++I      Q      E++   L +   +   D  G  + S
Sbjct: 317 RGVQECLDKIDIYVVIAGEAVI------QEGLLMTEQLRNVLPEWVIEA--DLSGSSLKS 368

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHR 441
           QF  AD  G    +++G + +  + V +KH R T  ++ ++ + +I Y    
Sbjct: 369 QFKRADKSGAKWALVIGEEEIKTNTVTLKHLRETVPQKSLTRDTLIPYLKSE 420


>gi|330957528|gb|EGH57788.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 429

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 62/424 (14%), Positives = 132/424 (31%), Gaps = 30/424 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP       +    +    +  G  ++ +P ++  DL+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRHFEGTVSRLLDNYGYRQIRMPIVEFTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN  ++   P            H  +        + I   FR E RP+ G  R    
Sbjct: 70  FADRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHE-RPQKGRYRQFHQ 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSHEFIVL 213
           +  + ++ D     ++       +  L          +     S       D   EF+  
Sbjct: 129 IGVEVFNLDGPDIDAELIVMTWRLWGLLGIRDAVKLELNSLGTSEARGRYRDALVEFL-S 187

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-------- 265
           A   +      +     P+   +T   +  ++     +        S VH E        
Sbjct: 188 AHLDQLDEDSQRRLKTNPLRVLDTKHPETQAVLVNAPKLADYLDDESRVHFEGLKARLDA 247

Query: 266 -----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 +   L       ++ +        G + ++     + G    +      + G+G
Sbjct: 248 AGIPYVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGL--VEQMGGKPTAGVG 305

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
               +  ++      + +    +            A +       EK+  +L  +   V 
Sbjct: 306 FAMGIERLVLLLETLEQVPEEIARQVDVYLCAFGDAAELAGLTLAEKVRDQLPNLRLQV- 364

Query: 381 WDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVIN 436
                   G   SQF  AD  G    +I+G + ++   + +K  R  G +++++ + ++ 
Sbjct: 365 ----NAGAGSFKSQFKKADKSGALYALILGEEELAAKVIGVKPLRGQGEQQNIAWDALLE 420

Query: 437 YASH 440
           + + 
Sbjct: 421 HLAS 424


>gi|15603876|ref|NP_246950.1| histidyl-tRNA synthetase [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431889|sp|P57988|SYH_PASMU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|12722453|gb|AAK04095.1| HisS [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 423

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 64/413 (15%), Positives = 125/413 (30%), Gaps = 33/413 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               V   +R      G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWVEGKVRSVLQNYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y      +Y +   FR E   +    R R+F       F + 
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNQEQRLWY-MGPMFRHERPQKG---RYRQFHQAGVEVFGIP 135

Query: 167 PEGSKHSYNKM----FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DT 216
                     +    +       H     +     E+          F+         + 
Sbjct: 136 NPEIDAELIMLTARLWKELGIAEHVTLQLNSIGSLEARKNYRSALVAFLQQHVDLLSEEE 195

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENK 275
            E         +D    +     +D   L + ++  +   +A    + +          K
Sbjct: 196 KERLEKNPLRILDTKNQALQEVLNDAPKLLAYLDDDSREHFAQLCALLDAVGIQYEVNPK 255

Query: 276 RVSARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAV 328
            V         +F       G + ++     + G       H      + +G  R+V  V
Sbjct: 256 LVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATTGVGFAMGLERLVLLV 315

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E +   +     D    ++     +           E +   L +    V     G   
Sbjct: 316 QEVNQSIRLPSAVDIYVVYQGEGTTL-----AAFQLAETLRTELPQ--LRVMTHCSGGNF 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASH 440
             QF  AD  G  L +++G   V + +V +KH L G  ++ ++L+++++Y  +
Sbjct: 369 KKQFKRADKSGATLALVIGESEVQNQQVVVKHLLGGAEQQTLALDDIVDYIKN 421


>gi|148545036|ref|YP_001272406.1| histidyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|184154370|ref|YP_001842711.1| histidyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227364184|ref|ZP_03848281.1| histidyl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|325683387|ref|ZP_08162903.1| histidine--tRNA ligase [Lactobacillus reuteri MM4-1A]
 gi|148532070|gb|ABQ84069.1| histidyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|183225714|dbj|BAG26231.1| histidyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227070823|gb|EEI09149.1| histidyl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|324977737|gb|EGC14688.1| histidine--tRNA ligase [Lactobacillus reuteri MM4-1A]
          Length = 433

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/417 (13%), Positives = 123/417 (29%), Gaps = 23/417 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G    LP   +    V  I R      G  E+  P  +  +++        D   K+M  
Sbjct: 13  GTVDILPGESELWQKVENIARNTFAEFGYSEIRTPMFEDYNVFARNVGDTSDIVEKQMYD 72

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ ++ +   P     +   +  +         P+  Y +   FR E        R R
Sbjct: 73  FHDKGERHVALRPEGTAGVVRAYVQNKLFGPEYPKPYKVYYMGPMFRYERPESG---RQR 129

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGG 204
           +F      + +                              + LG K          I  
Sbjct: 130 QFTQIGCEALNSESPQIDAEVILEALMFFKRLGITELRVAINTLGDKETRDNYRQALIDY 189

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA-ATSDVH 263
              H   +  D+ E         +D    ++     +  S+   +  ++A Y  +   + 
Sbjct: 190 LKPHYDELSDDSKERLYKNPLRVLDSKDETDKKIVANAPSILDSLSGYSAKYFDSVKKIL 249

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           ++   D + +N+ V         IF      S      +    G   Y  + S   G   
Sbjct: 250 DKFNVDYVVDNEMVRGLDYYTHTIFEI-MSNSPVFGGGYTTICGGGRYNGLISQIGGPDE 308

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKIS--LINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                         ++  ++ +        +      +   +   ++   L  +G  V  
Sbjct: 309 GGIGYGIGVERLLLLLREENKSFIPQPGLDLFFVTVGEKADNFAFELMEPLRTMGIKVDK 368

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED---MSLEEVI 435
           D  G ++G+Q   A         ++G K +   ++E+    +   E+   +S++E++
Sbjct: 369 DYQGLKVGTQIKEASRRNSRYFAVIGDKEILSKEIELNFTESDSSEEGKKVSIDELL 425


>gi|317505286|ref|ZP_07963215.1| glycyl-tRNA synthetase beta subunit [Prevotella salivae DSM 15606]
 gi|315663589|gb|EFV03327.1| glycyl-tRNA synthetase beta subunit [Prevotella salivae DSM 15606]
          Length = 530

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 58/355 (16%), Positives = 106/355 (29%), Gaps = 47/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  E+  L+D+ +K  +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 211 FSTEVGSLSDQTNKIYLRPETAQGIFVNYLNVQKTGRMKLPFGICQIGKAFRNEIVARQF 270

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           V R REF   +   F   P      +       L     LG+     R           H
Sbjct: 271 VFRMREFEQMEMQFFCQ-PGTEMKWFEYWKKHRLAWHKALGMGDENYRFHD--------H 321

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E +       T +     F                            +     +H+   F
Sbjct: 322 EKLAHYANAATDIEFHMPF---------------------------GFKEVEGIHSRTDF 354

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     K         G    +           +                +         
Sbjct: 355 DLSQHEK-------FSGRSIKYFDPDKNENYTPYDVETSIGVDRM--FLSVLCHSYTEEQ 405

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E+      +  P+++AP K ++  +   D    +  ++I   L     +  + D  + I
Sbjct: 406 LENGETRVVLKLPEALAPVKCAVFPLDKKD-GLPELAQQIVDDLK-FHFNTHYGDPKDSI 463

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  V V      D KV +++R T  +E + ++ +      R S
Sbjct: 464 GKRYRRQDAVGTPFCVTVDHDTPKDHKVTLRYRDTMKQERVDIDALRGIMEERVS 518


>gi|225619394|ref|YP_002720620.1| Histidyl-tRNA synthetase, class IIa [Brachyspira hyodysenteriae
           WA1]
 gi|225214213|gb|ACN82947.1| Histidyl-tRNA synthetase, class IIa [Brachyspira hyodysenteriae
           WA1]
          Length = 416

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/403 (13%), Positives = 106/403 (26%), Gaps = 19/403 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
           L+ +   I+      G   +  P  +  DL+        D  GKEM    DR  +++   
Sbjct: 21  LEYIENKIKNIVKLYGYGRIRTPLFEYTDLFTRGIGEGTDIVGKEMFTFEDRGGRSLTLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDLT 166
           P     +   +  +           + +   +R E   +    R REF         + +
Sbjct: 81  PEGTASVARAYVENSMQNEFAINKLFYLGTMYRAERPQKG---RYREFNQFGVECIGNSS 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           P                         I     S        +  +  A     +  C   
Sbjct: 138 PLIDAEIILLNINVLKEFGIDNVNLLINTVGCSK--CKPSYNNALKEAIGSRKEELCETC 195

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA------- 279
              +                  ++     Y    D   E       E  R+         
Sbjct: 196 QKRYEGNILRILDCKNEKCKETIKDIPKFYDYVCDECKEHFDRLCEELTRIGQNFTVDPM 255

Query: 280 --RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RG++      F  + +  + A      G  +   +G +  G                 
Sbjct: 256 LVRGLDYYTKTAFEVQ-TNALGAQSAILGGGRYDNLIGIFNNGKDVPAVGSAMGIERLLL 314

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           ++   +          I A  +   +   KI   L        +D   + I SQF  A+ 
Sbjct: 315 VLENQNNIITDRLDAFIVAFKETENEV-LKIMQTLRANNISCDYDFAVKSIKSQFKSANK 373

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                 V++G         ++K+  +G  +++S+ ++      
Sbjct: 374 RNAKYAVVLGEDEFKRGMCKLKNMDSGEEKEISINDIHKNIEK 416


>gi|161524637|ref|YP_001579649.1| histidyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189350607|ref|YP_001946235.1| histidyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|221198080|ref|ZP_03571126.1| histidyl-tRNA synthetase [Burkholderia multivorans CGD2M]
 gi|221204361|ref|ZP_03577378.1| histidyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221212770|ref|ZP_03585746.1| histidyl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|229558661|sp|A9AGZ7|SYH_BURM1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|160342066|gb|ABX15152.1| histidyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189334629|dbj|BAG43699.1| histidyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|221166983|gb|EED99453.1| histidyl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|221175218|gb|EEE07648.1| histidyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221182012|gb|EEE14413.1| histidyl-tRNA synthetase [Burkholderia multivorans CGD2M]
          Length = 446

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/433 (13%), Positives = 113/433 (26%), Gaps = 43/433 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   + ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFESTVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FTDALNGEHLTMRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 TGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-------- 265
                +     +     P+   +T    +  +     +       TS  H E        
Sbjct: 193 QHVDALDEDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGDTSRAHFEGLQRLLLA 252

Query: 266 -----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF--KGADGKDHYVQMGSYG 318
                K+   L          +        G + ++     +                + 
Sbjct: 253 NNIPFKINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWA 312

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G  R++  +       K            + +++        R+       RL   G D
Sbjct: 313 MGIERILELL-------KEENLAPEQEGVDVYVVHQG---DAAREQAFIAAERLRDTGLD 362

Query: 379 VFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTG------IRE 427
           V +    D       SQ   AD  G    VI G + V++  V +K  R TG       ++
Sbjct: 363 VIFHCSADGAPASFKSQMKRADASGAAFAVIFGEEEVANGTVGVKALRGTGGDGEKNAQQ 422

Query: 428 DMSLEEVINYASH 440
            + +E +  +  +
Sbjct: 423 TVPVESLTEFLIN 435


>gi|319757428|gb|ADV69370.1| histidyl-tRNA synthetase [Streptococcus suis JS14]
          Length = 427

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 62/422 (14%), Positives = 122/422 (28%), Gaps = 42/422 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R    +    E+  P  +  ++   S     D   KEM    D+ ++ +   
Sbjct: 20  WQYVENFTRSIFKQYNYAEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGERHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPAKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-----TGETQ 220
               +     +        F  LG+K I +   S       +     L D       +  
Sbjct: 137 NNPATD---VETIAMAYHFFEELGIKDIRLHLNSLGNPESRAAYRQALIDYLTPLKEQLS 193

Query: 221 VFCSKDFMDFPIPSENTDFDDII--------SLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
               +   + P+   ++   +           L+ + E+ TA + A   + +      + 
Sbjct: 194 KDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDYLDEESTAHFEAVKTMLDSLGIAYVI 253

Query: 273 ENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVV 325
           +   V         IF F     G   ++     + G              +G+G  R++
Sbjct: 254 DTNMVRGLDYYNHTIFEFMTEVGGNDLTICAGGRYDGLVTYFGGPETPAFGFGMGIERLI 313

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             + +   D       D          N             ++   + K G     D + 
Sbjct: 314 LVLEKQGIDLPLDTQLDVYIAVLGQEANGG---------ALELVQVIRKQGFRAERDYLD 364

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---INYASHRF 442
            ++ +QF  AD+ G    + +G   +   +V +K+  T  + + SLE +           
Sbjct: 365 RKLKAQFKSADVFGAKAIITLGGSEIESGQVVVKNNQTRSQVETSLEALKTDFASILEEL 424

Query: 443 SN 444
             
Sbjct: 425 EK 426


>gi|313890391|ref|ZP_07824022.1| histidine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121234|gb|EFR44342.1| histidine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 433

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 65/416 (15%), Positives = 114/416 (27%), Gaps = 19/416 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V A+ RE   +    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 21  LPEEAAKWQYVEAVARETFEKYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKG 80

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   F  +         P   Y I   FR E        R REF   
Sbjct: 81  DRHITLRPEGTAPVVRSFVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 137

Query: 159 DAYSF-DLTPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG  +         I       
Sbjct: 138 GVECFGSANPATDVETIAMANHLFETLGIKDITLHINSLGSPASRAAYRQALIDYLTPMR 197

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    ++  S+ + + E+  A + A  D+  +   
Sbjct: 198 EQLSKDSQRRLDENPLRVLDSKEKEDKVAVENAPSILDYLDEESQAHFEAVKDMLADLEI 257

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             + +   V         IF F              A G+   +     G         +
Sbjct: 258 PYVIDTNMVRGLDYYNHTIFEFMATVDKSELT--ICAGGRYDGLVSYFDGPETPGFGFGL 315

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                         ++       + I    +        +   L + G     D +G +I
Sbjct: 316 GLERLLLILEKQGITLPVAPEMDVYIAVLGESANSKALALVQSLRRQGFKAERDYLGRKI 375

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +QF  AD     + + +G   V   KV +K+  +    +   EE+ N      S 
Sbjct: 376 KAQFKSADNFKAKVIMTLGESEVEAGKVTLKNNQSRHEIEARFEEISNDFPSLLSK 431


>gi|157413040|ref|YP_001483906.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
 gi|157387615|gb|ABV50320.1| Histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
          Length = 450

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 67/442 (15%), Positives = 128/442 (28%), Gaps = 33/442 (7%)

Query: 18  AEIASHKLMLRTG-----MIHQHSK-----GIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
             I++ +L+ R            +      G    LP       NV  I+ E+ +R    
Sbjct: 3   HRISNQRLISRLIKNFELFFRTLNNLKNLRGTVDLLPNELIKWQNVEKILLEQLSRASIK 62

Query: 68  EMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
           E+  P L+  +L+V       D   KEM    DR +++    P     +         S 
Sbjct: 63  EIRTPILEMTELFVRGIGEGTDVVSKEMYTFLDRGERSCTLRPEGTASVARALIQSGISS 122

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD-AYSFDLTPEGSKHSYNKMFVSYLRI 184
             L   +Y +   FR E        R R+F      +    +           +    ++
Sbjct: 123 NPLQKLWY-MGPMFRYERPQAG---RQRQFHQLGVEFIGHDSVRSDIEIIALAWDILDKL 178

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD---------FMDFPIPSE 235
             +     I     +     +    F+   +  +  +               +D      
Sbjct: 179 GIKELNLEINTLGNTND-RSNFQKSFLNWLEINKDSLDLDSQNRITRNPLRILDSKNIQT 237

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
               ++   L + + + +    +      E L     EN  +        H  +  T  +
Sbjct: 238 KKALENAPRLFNFLSERSLKRYSDLKKQLEVLKIPYVENFNLVRGLDYYTHTAFEITSGA 297

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
           L   AT  G  G+   +     G     +  A+             +      I +IN  
Sbjct: 298 LGSQATVCG-GGRYDDLIKHMGGPNTPAIGFAIGLERLILLAGKELEVPRNTDIYIINQG 356

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
               +       +  +L K    V  D  G     QF  A+ L     +++G    +  +
Sbjct: 357 L---IAESLAMDLSRKLRKHDLIVELDLSGSTFSKQFKKANKLKSKSIIVIGDDEAAKRE 413

Query: 416 VEIKHRLTGIREDMSLEEVINY 437
             I+          + EEVI++
Sbjct: 414 FLIRLFD--QSGKRNKEEVISF 433


>gi|15897373|ref|NP_341978.1| glycyl-tRNA synthetase [Sulfolobus solfataricus P2]
 gi|284173285|ref|ZP_06387254.1| glycyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
 gi|13813596|gb|AAK40768.1| Glycyl-tRNA synthetase (glyS) [Sulfolobus solfataricus P2]
 gi|261602050|gb|ACX91653.1| glycyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
          Length = 574

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 5/141 (3%)

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---HDQVCR 362
            G+     +     G  R +   I S++  K      S+                 +   
Sbjct: 420 HGEHFIPHVVEPSFGVERTLFLTILSAYKEKEGRVLLSLPRHLAPYDIAVFPLLEREELI 479

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
               +I   LS+   +V +DD G  IG ++A AD +G P  + V  + + D+ V I+ R 
Sbjct: 480 RKSVEIRESLSEK-YEVLYDDSG-SIGRRYARADEIGIPFAITVDPQTLVDNSVTIRDRD 537

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +  +  + ++++       F 
Sbjct: 538 SWKQVRVKIDDLKISLEKLFR 558



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 11/84 (13%)

Query: 19 EIASHKLML---RTGM-----IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA---I 67
          E+    L L   R        I+    G Y   P+G +  + +  + R+   +      +
Sbjct: 3  EVIDKVLDLAKRRGIFWLSYEIYGGVAGFYDIGPVGVRIKNRIVELWRKYFVKDNGDFVV 62

Query: 68 EMSVPTLQSADLWVESGRYDSYGK 91
          E+  P +  A ++  SG  +S+  
Sbjct: 63 EIESPMIGPAKVFEASGHVESFTD 86


>gi|254363199|ref|ZP_04979248.1| histidine--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|153095093|gb|EDN75644.1| histidine--tRNA ligase [Mannheimia haemolytica PHL213]
          Length = 423

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 124/412 (30%), Gaps = 27/412 (6%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               V   +R      G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWVEQKVRNVLASYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYS 162
            P                Y N    +Y +   FR E       R       E        
Sbjct: 80  RPEGTAGCVRAAIERGWIYNNEQRLWY-MGPMFRHERPQKGRYRQFHQAGVEVFGIANPE 138

Query: 163 FDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            D           K            + +G         S  +    +H  ++  +  E 
Sbjct: 139 IDAELIILTARLWKELGIDQHVSLQLNSIGSLEARANYRSALVKFLENHTALMNEEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISL-----NSIVEQWTAPYAATSDV-HNEKLFDSLPE 273
            V      +D    +     +D   L     +   E +T   A    +    ++   L  
Sbjct: 199 LVKKPLRILDTKNEALQNVLNDAPKLLDYLDDDSREHFTQLCALLDAMGIRYEVNPKLVR 258

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 + +        G++ ++     + G       H  Q   + +G  R+V  V E 
Sbjct: 259 GLDYYNKTVFEWVTSALGSQGTVCGGGRYDGLVEQLGGHATQGVGFAMGLERLVLLVQEV 318

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           + +       D    F      +           E+I + L  VG        G +   Q
Sbjct: 319 NKEIDLPKTVDVYIVFSGEGATLN-----AFQLAEQIRSELPHVGVMTHC--SGGKFQKQ 371

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
           F  AD +   + +++G   V++ +V IK   +G  +  ++  E+I   S RF
Sbjct: 372 FKRADKVEAQIALVIGESEVAEKQVVIKDLRSGAEQITIAQSELIAELSKRF 423


>gi|254570979|ref|XP_002492599.1| Cytoplasmic and mitochondrial glycyl-tRNA synthase [Pichia pastoris
           GS115]
 gi|238032397|emb|CAY70420.1| Cytoplasmic and mitochondrial glycyl-tRNA synthase [Pichia pastoris
           GS115]
 gi|328353394|emb|CCA39792.1| glycyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 653

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 6/141 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              +++   +     G  R++ ++ E +   +       V      +   K        +
Sbjct: 488 EHIREYTPNVIEPSFGIGRIIYSIFEHAFYPRPDDADRCVLKLPPIVAPTKVLLVPLQTN 547

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +   ++I   L K       DD G  IG ++A  D LG P  + +    ++D  V +
Sbjct: 548 AEFKPIVKEISQVLRKEKIPFKVDDSGASIGKRYARNDELGTPFGITIDFDTIADGTVTL 607

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           + R +  +   S+ +++    
Sbjct: 608 RERDSTTQVRGSVADIVKAIK 628



 Score = 48.2 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     N+  + R+        +E+    L   ++   SG  D +   M R
Sbjct: 37 SGLYDYGPPGCAFQANIVDVWRKHFILEEDMLEVDCTMLTPLEVLKTSGHVDKFSDWMCR 96


>gi|156102126|ref|XP_001616756.1| glycine-tRNA ligase [Plasmodium vivax SaI-1]
 gi|148805630|gb|EDL47029.1| glycine-tRNA ligase, putative [Plasmodium vivax]
          Length = 842

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 51/147 (34%), Gaps = 9/147 (6%)

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA---------HDQ 359
           +    +     G  R++  +IE S   +          +      +           +++
Sbjct: 677 NFIPNVIEPSFGIGRLIFCIIEHSFRTRTFADEKEERHYLSLPYALAPVKCSVLTISNNK 736

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L+++      D     IG ++A  D +G P  V +  + + D  V ++
Sbjct: 737 TFVPFVKQIQMILNEISISSKIDTSSVSIGKKYARTDEIGIPFAVTIDFQTLKDKTVTLR 796

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R + ++  + L E+    +      +
Sbjct: 797 ERDSMLQVRLGLSELPGAVTALLRQKK 823



 Score = 40.5 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 41/175 (23%), Gaps = 6/175 (3%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEML 94
           S G+  + P G      +  + R         +E+    +   ++   SG  D +   M+
Sbjct: 194 SSGLIDYGPSGCLLKSELETLWRYHFIFYDEMLEICGTCITPYNVLKTSGHVDRFTDLMI 253

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           R A   +         E        S  ++ +         +     + +P   V     
Sbjct: 254 RDAVTGEFFRADKYIAE-----WLTSRAEAVKKQEGEQAGDKRDHPLQEQPPHQVASQPH 308

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
              +           S+     +   Y            P              E
Sbjct: 309 SAEQMMGVVRRLDGMSEQEIKDVIQQYEIKSPAKNEFVGPFPFNLMFQTKIGPKE 363


>gi|254429026|ref|ZP_05042733.1| histidyl-tRNA synthetase [Alcanivorax sp. DG881]
 gi|196195195|gb|EDX90154.1| histidyl-tRNA synthetase [Alcanivorax sp. DG881]
          Length = 424

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 63/438 (14%), Positives = 124/438 (28%), Gaps = 37/438 (8%)

Query: 31  MIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY- 86
           M  + +   G+   LP        + A +       G  E+ +P ++  DL+  S G   
Sbjct: 1   MSKKITSIRGMNDILPEQTGLWQWLEAKVGAVLASYGYQEIRMPIVEQTDLFKRSIGEVT 60

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D   KEM    DRN  ++   P            H   Y       +     FR E    
Sbjct: 61  DIVEKEMYTFDDRNGDSLTLRPEGTASCVRACEQHGLLYNQ-TQRLWYTGPMFRHERPQA 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF----------VSYLRIFHRLGLKSIPMR 196
               R R+F      +F ++          +                  + LG  +   R
Sbjct: 120 G---RYRQFHQIGVETFGMSGPDIDAEVILLTARLWKALGLADKVTLELNSLGDSADRAR 176

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL--NSIVEQWTA 254
                +     H   +  D+ +         +D   P       D   L      E    
Sbjct: 177 YRDALVDYLKIHVDALDGDSQKRLERSPLRVLDSKDPGTREVLKDAPQLADYLNDEAVAH 236

Query: 255 PYAATSDVH----NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                + +       K+   L        + +        G + ++     + G   +  
Sbjct: 237 FEGLKALLDASGIAYKVNPYLVRGLDYYGKTVFEWVTDALGAQGTVCAGGRYDGLVEQLG 296

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                + G         ++           P+  AP  + ++ +           E++  
Sbjct: 297 GKPTPAVGFAMGVERLILLI------EQEKPELSAPVDVYVMAMGDVLASTMALSEQLRD 350

Query: 371 RL--SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIRE 427
            L    +         G    SQ   AD  G  + +I+G   ++ + V +K  R    ++
Sbjct: 351 ALPGRAIQLHC----GGGSFKSQMKKADRSGAAVALIIGEDELASNSVMVKPLRGQAEQQ 406

Query: 428 DMSLEEVINYASHRFSNN 445
            +S ++V +      ++N
Sbjct: 407 QVSRDQVASELVALLADN 424


>gi|319952720|ref|YP_004163987.1| glycyl-tRNA synthetase [Cellulophaga algicola DSM 14237]
 gi|319421380|gb|ADV48489.1| glycyl-tRNA synthetase [Cellulophaga algicola DSM 14237]
          Length = 513

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 81/247 (32%), Gaps = 16/247 (6%)

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              E       G  Q +  K   +      +             E+  A YA  +     
Sbjct: 266 EQMEMQFFIQPGTQQEWYEKWKENRMKWHLSLGLGQENYRFHDHEKL-AHYADAAADIEF 324

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           K      E + + +R            K+S      F     + +   +    IG  R+ 
Sbjct: 325 KFPFGFKELEGIHSRTNFDLSQHE---KFSGKKLQYFDNDLKESYVPYVVETSIGLDRMF 381

Query: 326 AAVIESSHDGKGIIWPDSVA---------PFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            AV  +S + + +    +           P K ++  +   D    +   +I   L    
Sbjct: 382 LAVFSNSLEEEELENGTTRTVLKLPAVLAPTKAAVFPLVKKD-GLPELAHEIINELK-WE 439

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            +VF+D+    +G ++   D  G P  + V  + + D  V I+HR T  +E +++ ++  
Sbjct: 440 FNVFYDEKDA-VGKRYRRQDANGTPFCITVDHQSLEDKTVTIRHRDTMEQERVAISDLKT 498

Query: 437 YASHRFS 443
             +   +
Sbjct: 499 MINKAVA 505



 Score = 37.4 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 10/88 (11%)

Query: 19 EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTG--AIEMS 70
          ++ SH      G + Q S        +Y +   G +   N+     +   +     + + 
Sbjct: 10 KVISHAKE--YGYVFQSSEIYDGLSAVYDYAQNGAELKKNIREYWWKAMVQMNDNIVGID 67

Query: 71 VPTLQSADLWVESGRYDSYGKEMLRLAD 98
                  +W  SG  D++   ++   D
Sbjct: 68 TAIFMHPTVWKASGHVDAFNDPLIDNKD 95


>gi|260583855|ref|ZP_05851603.1| histidine--tRNA ligase [Granulicatella elegans ATCC 700633]
 gi|260158481|gb|EEW93549.1| histidine--tRNA ligase [Granulicatella elegans ATCC 700633]
          Length = 438

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 72/432 (16%), Positives = 123/432 (28%), Gaps = 28/432 (6%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           MI +  KG    LP   K    +    R         EM  P  +S +L+        D 
Sbjct: 1   MIQKP-KGTADLLPEEIKIWHYIEETARIILGDYQFEEMRTPMFESYELFSRGVGDTSDI 59

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPR 146
             KEM    D+ D+ +   P     +   +  +         P+  Y +   FR E    
Sbjct: 60  VSKEMYDFYDKGDRHITLRPEGTAAIVRAYVENKLFGPEHKKPYKVYYMAPMFRYERPQS 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
               R R+F       F  T   +     +       +   LGL ++ +   S     D 
Sbjct: 120 G---RLRQFHQLGVEVFGSTNPATD---VETIAMAWDLLKELGLSNMRLVINSLGKTADR 173

Query: 207 SHEFIVLAD-----TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                 L D     T E            P+   ++     I +     +     +  + 
Sbjct: 174 IAYRQALIDYLEPFTEELSEDSKNRLHKNPLRVLDSKDKRDIEIVKNAPRILEFLSDEAR 233

Query: 262 VHNEKLFDSLP------ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
            H EK+   L       E      RG++     IF   T      + T     G+   + 
Sbjct: 234 THFEKVQQYLTALEIPFEIDETMVRGLDYYQDTIFEIMTDSKSFGAKTTICGGGRYDGLV 293

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
               G         +               +   +     I    +   +   K+   L 
Sbjct: 294 QELDGPETPGFGFGLGMERLVLLMKDEQVEIPDLQELDAYIVGLGEETEEEVLKLSISLR 353

Query: 374 KVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           + G  V  D      +   QF  A   G  + + +G + ++  +V +K   TG    + L
Sbjct: 354 QQGYSVDRDFFGRKAKP--QFKNAQKYGAKVVITLGEEELASRQVPLKVMNTGKEVKVDL 411

Query: 432 EEVINYASHRFS 443
            +V       F 
Sbjct: 412 ADVYEDFDSLFR 423


>gi|167569733|ref|ZP_02362607.1| histidyl-tRNA synthetase [Burkholderia oklahomensis C6786]
          Length = 446

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/426 (14%), Positives = 114/426 (26%), Gaps = 29/426 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + +   FR E   R    R R+F
Sbjct: 76  FVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYVGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 T--GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               +      +     P+   +T    +  +     +        S  H E L   L  
Sbjct: 193 QHVAQLDDDAQRRLYTNPLRVLDTKNPALQEIVQNAPKLIDFLGDASRAHFEGLQKLLKA 252

Query: 274 NKR------VSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           N           RG++     +F + T     + A    A G  +   +   G       
Sbjct: 253 NNLPFTINPRLVRGLDYYNLTVFEWVTDK---LGAQGTVAAGGRYDPLIEQLGGKPTAAC 309

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW---- 381
              +      + +     V   +   + +       R+    +  RL   G DV      
Sbjct: 310 GWAMGVERILELLKEESLVPEQEGVDVYVVHQGDAAREQAFVVAERLRDTGLDVVLHCSA 369

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-------IREDMSLEEV 434
           D  G    SQ   AD  G    VI G   +++    +K            +++ + +E +
Sbjct: 370 DGAGASFKSQMKRADASGAAFAVIFGEDEIANGTASVKPLRGMGAEGEKNVQQSVPVESL 429

Query: 435 INYASH 440
            ++  +
Sbjct: 430 TDFLIN 435


>gi|148666302|gb|EDK98718.1| glycyl-tRNA synthetase, isoform CRA_a [Mus musculus]
          Length = 729

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 77/286 (26%), Gaps = 22/286 (7%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 419 FRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKE 478

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-------------VGHI 287
            I       E              + + + L          +E              G  
Sbjct: 479 PITVNVVQFEPNKGAVGKAYKKDAKLVLEYLSACDECYISEMELLLSEKGEFTIETEGKT 538

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F              K    ++    +     G  R++  ++E +   +      +   F
Sbjct: 539 FQLTKDMVSVKRFQ-KTLHVEEVVPSVIEPSFGLGRIMYTILEHTFHVREGDEQRTFFSF 597

Query: 348 KISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
              +   K      + +Q      +++   L++ G     DD    IG ++A  D +G  
Sbjct: 598 PAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGVA 657

Query: 402 LQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + +    V+       ++ R +  +    + E+ +      + N
Sbjct: 658 FGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPSVVRDLANGN 703



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 135 SGLYDFGPVGCALKNNIIQAWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 194

Query: 96  LADRNDK 102
                + 
Sbjct: 195 DVKNGEC 201


>gi|85057874|ref|YP_456790.1| histidyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|123725331|sp|Q2NIN2|SYH_AYWBP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|84789979|gb|ABC65711.1| histidyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 427

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/423 (12%), Positives = 116/423 (27%), Gaps = 44/423 (10%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGP 108
              V   IR    +    E+  P ++   ++   +   +   KE     D+  + +   P
Sbjct: 19  WQKVENHIRTLFAKYHLQEIRTPIIEYRGVFDRAAQHSEMVSKETYTFTDKKGRFITLRP 78

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREF--------- 155
                +   +  +     +    F+     FR E       R       E          
Sbjct: 79  EGTAGVIRSYVENKLDKTSQLHKFFYYGPFFRYERPQKGRYRQFHQVGVEILGQSSPFLD 138

Query: 156 ---------LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
                     +K     D+T + +       + +YL++F +  L++   +          
Sbjct: 139 VEVIFLAYKTLKSLGICDITVKINSLGCKTTYNNYLQVF-KNYLQTHYQQLCPL------ 191

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                   +    +++  K+  + P   +     D +  ++ V              N +
Sbjct: 192 ---CQERFEKNILRIWDCKNCNNEPFLKQAPRIFDHLVEDAKVRFLQVLEGLKQMNVNFE 248

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           L   L               +F           A   G    D+ V +           A
Sbjct: 249 LCHDLVRGLDY-----YTNSVFEIVYNNEQGHQAVLGGGGCYDNLVTLFRGSPSPGIGFA 303

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
             +E            +          I   +        ++   L   G     +    
Sbjct: 304 LGMERLMSILATRSFCNKNILPSLDAFILVSEPQFFYQGLELATTLRHQGFSADLNYKFL 363

Query: 387 QIGSQFAVADLLGFP-LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
                   A L   P   +I+G K  +++++ IK+  T  +  +  ++V++Y      NN
Sbjct: 364 SFSKSLKQA-LKKQPLYLLILGPKEFANNQITIKNTYTQQQTTILQKDVVSYLQ----NN 418

Query: 446 RPV 448
           + +
Sbjct: 419 KEL 421


>gi|198464323|ref|XP_001353177.2| GA19857 [Drosophila pseudoobscura pseudoobscura]
 gi|198149667|gb|EAL30679.2| GA19857 [Drosophila pseudoobscura pseudoobscura]
          Length = 679

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 7/132 (5%)

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYA 370
              G  R++ A++E S   +              +  +K      +++   +   +K+ +
Sbjct: 524 PSFGIGRIMYALLEHSFQCREGDDQRCYFTLPPLVAPLKCSILPLSNNAEFQPYTQKLSS 583

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDM 429
            L+K       DD    IG ++A  D +  P  + V    + +   V ++ R T  +  +
Sbjct: 584 SLTKAELSHKVDDSSGSIGRRYARTDEIAIPYGITVDFDTLKEPHTVTLRDRNTMKQVRV 643

Query: 430 SLEEVINYASHR 441
            LE+V+      
Sbjct: 644 GLEQVVGVVKDL 655



 Score = 42.0 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+ ++ R+        +E+    L   
Sbjct: 73  LLKRRFFYDQSFAIYGGITGQYDFGPMGCALKSNILSLWRQYFALEEQMLEVDCSILTPE 132

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  + +   M++     + 
Sbjct: 133 PVLKASGHVERFADLMVKDVKTGEC 157


>gi|58268176|ref|XP_571244.1| glycine-tRNA ligase [Cryptococcus neoformans var. neoformans JEC21]
 gi|57227479|gb|AAW43937.1| glycine-tRNA ligase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 699

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 79/283 (27%), Gaps = 31/283 (10%)

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS---------------------KDFMD 229
           +     A           +F + +  G  +                         +  +D
Sbjct: 395 RCRQHMANEMAHYATDCWDFEIQSSYGWIECVGCADRSAYDLTVHSVRTKQPLRVQQRLD 454

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV---SARGIEVGH 286
            P   E  +         +  +  A     + +  EK      +++     S      G 
Sbjct: 455 QPRTVEKLECTFDAKAFGMKFKKDATMIKETLLGLEKEKLQCIKDELENGSSNVQCADGK 514

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            +            T      ++    +     G  R++  V+E ++  +       V  
Sbjct: 515 SYEITPDLVKINPITVT-EHMREFIPNVIEPSFGIGRILYCVLEHTYWAREQDAARGVLS 573

Query: 347 FKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
               +  IK      + D   R    ++   + K G     DD    IG ++A  D LG 
Sbjct: 574 LPALVAPIKCLIVSISQDAQLRSKIHEVSREMRKRGIASRVDDSSATIGKKYARNDELGT 633

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           P    V    + +  + ++ R +  +    +E+VI+       
Sbjct: 634 PFGCTVDFATIQNGTMTLRERDSTSQLIGPIEDVISVVDQLVK 676



 Score = 45.9 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 25  LMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSA 77
           L+ R               G+Y + P G     N+    R+        +E+    +  +
Sbjct: 62  LLARRFFFAPSFEIYGGVAGLYDYGPTGSALQANILDAWRKHYIIEEDMLELDTTIMTLS 121

Query: 78  DLWVESGRYDSYGKEMLRLADRND 101
           D+   SG  D +   M++     +
Sbjct: 122 DVLKTSGHVDKFADWMVKDVKNGE 145


>gi|81889021|sp|Q5I0G4|SYG_RAT RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Diadenosine
           tetraphosphate synthetase; Short=AP-4-A synthetase;
           AltName: Full=Glycine--tRNA ligase; Short=GlyRS
 gi|56971386|gb|AAH88347.1| Gars protein [Rattus norvegicus]
          Length = 637

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/286 (10%), Positives = 76/286 (26%), Gaps = 22/286 (7%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 327 FRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKE 386

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-------------VGHI 287
                    E              + + + L          +E              G  
Sbjct: 387 PKTVNVVQFEPNKGAVGKAYKKDAKLVLEYLGACDECYITEMELLLSEKGEFTIETEGKT 446

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F              K    ++    +     G  R++  ++E +   +      +   F
Sbjct: 447 FQLTKDMVSVKRFQ-KTLHVEEVVPSVIEPSFGLGRIMYTILEHTFHVREGDEQRTFFSF 505

Query: 348 KISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
              +   K      + +Q      +++   L++ G     DD    IG ++A  D +G  
Sbjct: 506 PAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGVA 565

Query: 402 LQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + +    V+       ++ R +  +    + E+ +      + N
Sbjct: 566 FGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPSVVRDLANGN 611



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 43  SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 102

Query: 96  LADRNDK 102
                + 
Sbjct: 103 DVKNGEC 109


>gi|84489844|ref|YP_448076.1| glycyl-tRNA synthetase [Methanosphaera stadtmanae DSM 3091]
 gi|84373163|gb|ABC57433.1| GlyS [Methanosphaera stadtmanae DSM 3091]
          Length = 580

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 65/393 (16%), Positives = 118/393 (30%), Gaps = 76/393 (19%)

Query: 126 RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
             LPF   Q+   +R+EL PR GV+R REF   +A  F    + +  +Y  +    L ++
Sbjct: 179 DKLPFGIVQLGKSYRNELSPRQGVIRLREFTQAEAEIFVDPSDKTHKNYKNIENHVLHLY 238

Query: 186 HRLGL------------------------------KSIPMRAESGPIGGDLSHEFIVLAD 215
           ++                                  +     + G     +     +  +
Sbjct: 239 NQKEQLNEGKPIEITVKDAIDNNIVSSEMLIYQIVIAHKFLRDLGIEDDVIRFRQHLPDE 298

Query: 216 TGETQVFCSKD--------FMDFPIPSENTDFDDIISLNSIVEQWTAP--------YAAT 259
                + C           +++    ++ TDFD    +    E  +             T
Sbjct: 299 MAHYAIDCWDAEVKTDQYGWVEIIGIADRTDFDLKSHIKHSKEDLSVFKEYDTPKNVTVT 358

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGH---------------IFYFGTKYSLPMSATFKG 304
               N K F    +     A+ I                    F  G        +  K 
Sbjct: 359 KPSFNMKKFGPTFKGDSPKAKEILENTDSNIIKESFDKDGVFSFSIGENKYEIDQSFVKF 418

Query: 305 A------DGKDHYVQMGSYGIGAMRVVAAVIESSH--DGKGIIWPDSVAPFKISLINIKA 356
                   G      +     G  R++ + +  S+  D        S       +  IKA
Sbjct: 419 ETKEEQIRGDRIIPHVIEPSYGIDRIIYSTLLHSYTEDETEEGEKRSYLKLPAKIAPIKA 478

Query: 357 ------HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
                 + Q      E I   L        +D  G  IG ++A AD +G P  + +    
Sbjct: 479 AILPLVNKQPLTLIAEDIETTLRSSNIITSFDGSG-TIGRRYARADEIGIPYAITIDYDT 537

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           V D KV I++R T  ++ + +E++    ++   
Sbjct: 538 VDDKKVTIRNRDTFKQKRVEIEKLSMIINNLVE 570



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G Y + PLG    +N+  + R+   +  G  E+  PT+   +    SG  D++   M +
Sbjct: 27  AGFYDYGPLGGVLKNNIMNLWRKYYVSNEGFYEIEAPTIMPRETLKASGHVDNFTDPMTQ 86

Query: 96  LADRND 101
             + N+
Sbjct: 87  CMECNE 92


>gi|293400600|ref|ZP_06644745.1| histidine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305626|gb|EFE46870.1| histidine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 441

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 58/405 (14%), Positives = 118/405 (29%), Gaps = 27/405 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLA-DRNDKAMIYG 107
              +  +IR+        E+  P  +  +++       D   KEM     + +  ++   
Sbjct: 26  WHKLEDMIRQFCYVYNYDEIRTPIFEHTNVFKRGNDSSDMVNKEMYTFQLENSATSLTLR 85

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +        +    +LP   Y +  + R E   +  +    +F ++   +    
Sbjct: 86  PEGTAGVARAFVEHKMFGNADLPVKMYYVGPQCRHERPQKGRMRIFHQFGVEVIGAKSPM 145

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            +    +    FVS L +     L +     ES         E     D     V C + 
Sbjct: 146 LDVETIALGWSFVSALGLKDMKVLINTLGDDESRAAYRAALKE-HFKNDIDTMCVDCKRR 204

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSAR 280
           +   P+   +   D    +     +        S  + +++ + L       E      R
Sbjct: 205 YEQNPLRILDCKVDHDKDIMKTAPKMEDYLNDASKQYFKEVLEGLDALGIPYEVDDRLVR 264

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           G++          +++    +     G    V  G    G +         S  G  +  
Sbjct: 265 GLDYYT-------HTVFEVVSVNKEMGAQSTVFAGGRYDGLVEYFGGPEGMSGIGWAMGL 317

Query: 341 PDSVAPFKISLINIKAHD----------QVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              +   +   I +   D                   I   L   G     D +G    +
Sbjct: 318 ERLIIACEAEGITLDEEDGLDAYVLCLADSVHKEVLAITTELRTNGYRTDTDYLGRSFKA 377

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           QF   D       +++G   V++  V IK   T  +  + +EE+I
Sbjct: 378 QFKTVDRKHARCAILIGDSEVANGTVNIKDVKTQQQYTVPMEELI 422


>gi|134113354|ref|XP_774702.1| hypothetical protein CNBF3810 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257346|gb|EAL20055.1| hypothetical protein CNBF3810 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 673

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 56/176 (31%), Gaps = 7/176 (3%)

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            K  S      G  +            T      ++    +     G  R++  V+E ++
Sbjct: 476 EKGSSNVQCADGKSYEITPDLVKINPITVT-EHMREFIPNVIEPSFGIGRILYCVLEHTY 534

Query: 334 DGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
             +       V      +  IK      + D   R    ++   + K G     DD    
Sbjct: 535 WAREQDAARGVLSLPALVAPIKCLIVSISQDAQLRSKIHEVSREMRKRGIASRVDDSSAT 594

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           IG ++A  D LG P    V    + +  + ++ R +  +    +E+VI+       
Sbjct: 595 IGKKYARNDELGTPFGCTVDFATIQNGTMTLRERDSTSQLIGPIEDVISVVDQLVK 650



 Score = 45.9 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 25  LMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSA 77
           L+ R               G+Y + P G     N+    R+        +E+    +  +
Sbjct: 31  LLARRFFFAPSFEIYGGVAGLYDYGPTGSALQANILDAWRKHYIIEEDMLELDTTIMTLS 90

Query: 78  DLWVESGRYDSYGKEMLRLADRND 101
           D+   SG  D +   M++     +
Sbjct: 91  DVLKTSGHVDKFADWMVKDVKNGE 114


>gi|159112161|ref|XP_001706310.1| Glycyl-tRNA synthetase [Giardia lamblia ATCC 50803]
 gi|157434405|gb|EDO78636.1| Glycyl-tRNA synthetase [Giardia lamblia ATCC 50803]
          Length = 621

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 6/142 (4%)

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA------HDQ 359
            G+     +     G  R++ +++E S   + I    +V  FK  L+  KA       + 
Sbjct: 457 HGESIVPHVIEPSFGVGRILYSILEHSFYTRNIDEQRTVFRFKPYLVGCKAIVLPLQRND 516

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                   +  RL + G     D  G  IG ++A AD +G P  V +  + + D  V I+
Sbjct: 517 DLLSTSSHVLERLRRSGIAAKQDATGAPIGRRYARADEIGIPFAVTIDFQTLEDGSVTIR 576

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R +  +  +  +++    ++ 
Sbjct: 577 ERDSMDQIRVGSKQLSQVIANL 598



 Score = 38.6 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y   P   +  +N  ++ R+        +E+    +    +   SG    +   M++
Sbjct: 27  AGLYDLGPSTTELRNNFLSMWRQHFVVAEDMLEIMCTNIVPDKVLQASGHVARFADVMVK 86

Query: 96  LADRNDK 102
                + 
Sbjct: 87  DTKNGEC 93


>gi|189345839|ref|YP_001942368.1| histidyl-tRNA synthetase [Chlorobium limicola DSM 245]
 gi|229558643|sp|B3EFA6|SYH_CHLL2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189339986|gb|ACD89389.1| histidyl-tRNA synthetase [Chlorobium limicola DSM 245]
          Length = 430

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/412 (14%), Positives = 113/412 (27%), Gaps = 32/412 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRL-ADRNDKAMIY 106
             +V  +I       G  E+  P  +  +L+  S     D  GKEM     D + +++  
Sbjct: 21  WKHVEGVIHRLAALYGFNEIRTPVFEYTELFQRSIGSSTDIVGKEMFSFLPDPSGRSITL 80

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +                  Y I   FR E        R R+F    A    ++
Sbjct: 81  RPEMTAGVMRAALQKNLLAAAPVQKLYYISELFRKERPQAG---RQRQFSQFGAELLGVS 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVLA------DTG 217
              +        +         GLK         +      D    ++          + 
Sbjct: 138 SPAAVAEVITFMMHVFEDLGLQGLKLRINTLGNMDDRKRYRDALRNYLAPCYEQLDDASK 197

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN------EKLFDSL 271
           E         +D   P       D   L   + +           +        ++   L
Sbjct: 198 ERFEKNPLRILDSKNPEMQQIVKDAPKLYDYLGREALDDFEKVLFYLSARGIPFQIDHRL 257

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAV 328
                  +           G + +L     +       G    V    + +G  R++ A+
Sbjct: 258 VRGLDYYSYTAFEVTSSALGAQDALGGGGRYDSLAVELGSSGEVPASGFAVGMERLLIAM 317

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +            SV              +   D   +I   L + G     D  G  +
Sbjct: 318 QKQGLFSDLDAAAPSVFVIVQQ--------EELFDQALEIVTTLRRAGISAVIDLAGRSM 369

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +Q   A+ +     + VGS  ++  K  +K   + ++++  LEE+I+    
Sbjct: 370 KAQLREANRMNAANALFVGSDELASGKCTMKDLRSSLQDEYFLEEIIDKFRK 421


>gi|294085497|ref|YP_003552257.1| Histidyl-tRNA synthetase, class IIa [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665072|gb|ADE40173.1| Histidyl-tRNA synthetase, class IIa [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 422

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/416 (14%), Positives = 119/416 (28%), Gaps = 19/416 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G    LP        V    R    + G  EM+ P  +  D++ +      D   KE   
Sbjct: 9   GTSDLLPADMAGHRFVVDHARAASAQYGFQEMATPIFEFTDVFSKPLGTSSDVVTKETYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  + +   P +   +     S   + ++LP  F+     FR E   +    R R+F
Sbjct: 69  FEDRGGEQITLRPENTAGVVRAMISGGLT-QSLPLKFFYAGPMFRYERPQKG---RMRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                     T   +           L     L    + + +             +V   
Sbjct: 125 HQIGIEYLGPTDALADAEIIACGARVLADIGVLDKCVLHLNSLGDTESRLTYRAALVDYL 184

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFDSLP 272
            G              +               I+    +        S  H E L  +L 
Sbjct: 185 GGHKDALSDDSKQRLAVNPLRILDSKDKGDREIIVAAPRLQDHLNDLSKAHFETLTTALD 244

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFK-GADGKDHYVQMGSYGIGAMRVV----AA 327
             K       +   +   G  Y    +  F   A G    V  G    G   ++     A
Sbjct: 245 AAK----IAWQFDPLLVRGLDYYCHTAFEFITDALGAQGTVLGGGRYDGLSEMLGGPAIA 300

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
            +  +   + +    +     +  + + + D        ++   L   G  V        
Sbjct: 301 GVGWAGGIERLAMLAAGGTVVVPQLAVVSADSESDHHAFQLAESLRDAGFSVDL-PTAGN 359

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G +    D  G  + +I+G   V    V++++   G +++++ + ++   S   +
Sbjct: 360 MGKKMKKLDKAGIKIAIILGGDEVERGVVQLRNLADGSQDEVTRDALVKALSLIIA 415


>gi|328474881|gb|EGF45681.1| histidyl-tRNA synthetase [Listeria monocytogenes 220]
          Length = 396

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/402 (14%), Positives = 105/402 (26%), Gaps = 36/402 (8%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
                 E+  P  +  +L+        D   KEM    D+  +++   P     +   F 
Sbjct: 3   ENYQYEEIRTPVFEHTELFERGVGDSTDIVSKEMYTFQDKGGRSLTLRPEGTASVVRAFV 62

Query: 120 SHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            H      + P   Y  +  FR E        R R+F      +                
Sbjct: 63  EHKLYGEVSQPIKMYYNEPMFRYERPQGG---RQRQFTQMGIEALGSDDPSIDVEV---I 116

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF-----IVLADTGETQVFCSKDFMDFPIP 233
              +  F ++GL +I +   S                       E    C       P+ 
Sbjct: 117 SLAMEFFRKIGLINIKLVINSLGDKESRLKHREALVAHFEPHIDEFCAECQVRLHKNPLR 176

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSARGIEV--G 285
             +   D    L              S  + E +   L       E      RG++    
Sbjct: 177 ILDCKKDHDNPLIQSAPSILDFLNEESVAYFENVKKYLNALEIPFEIDSTMVRGLDYYNH 236

Query: 286 HIFY-------FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
             F        FG K +L     + G   +         G G       +     D K  
Sbjct: 237 TTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGGPDTPGMGFGIGVERILLALEKADIKIP 296

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                      +                 +  +L + G     D +  +  +Q   A+  
Sbjct: 297 AKKPLEVYVITAQP-------EAELKAVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRK 349

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                +I+G + +     ++K+  TG +E +S   ++    +
Sbjct: 350 NAVYTIILGEEELQTGNYQLKNMETGEQEAVSETTILEKLIN 391


>gi|74139030|dbj|BAE38417.1| unnamed protein product [Mus musculus]
          Length = 725

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 76/286 (26%), Gaps = 22/286 (7%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 415 FRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKE 474

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-------------VGHI 287
                    E              + + + L          +E              G  
Sbjct: 475 PKTVNVVQFEPNKGAVGKAYKKDAKLVLEYLSACDECYISEMELLLSEKGEFTIETEGKT 534

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F              K    ++    +     G  R++  ++E +   +      +   F
Sbjct: 535 FQLTKDMVSVKRFQ-KTLHVEEVVPSVIEPSFGLGRIMYTILEHTFHVREGDEQRTFFSF 593

Query: 348 KISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
              +   K      + +Q      +++   L++ G     DD    IG ++A  D +G  
Sbjct: 594 PAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGVA 653

Query: 402 LQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + +    V+       ++ R +  +    + E+ N      + N
Sbjct: 654 FGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPNVVRDLANGN 699



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 131 SGLYDFGPVGCALKNNIIQAWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 190

Query: 96  LADRNDK 102
                + 
Sbjct: 191 DVKNGEC 197


>gi|93102417|ref|NP_851009.2| glycyl-tRNA synthetase [Mus musculus]
 gi|21264024|sp|Q9CZD3|SYG_MOUSE RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Diadenosine
           tetraphosphate synthetase; Short=AP-4-A synthetase;
           AltName: Full=Glycine--tRNA ligase; Short=GlyRS
          Length = 729

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 76/286 (26%), Gaps = 22/286 (7%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 419 FRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKE 478

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-------------VGHI 287
                    E              + + + L          +E              G  
Sbjct: 479 PKTVNVVQFEPNKGAVGKAYKKDAKLVLEYLSACDECYISEMELLLSEKGEFTIETEGKT 538

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F              K    ++    +     G  R++  ++E +   +      +   F
Sbjct: 539 FQLTKDMVSVKRFQ-KTLHVEEVVPSVIEPSFGLGRIMYTILEHTFHVREGDEQRTFFSF 597

Query: 348 KISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
              +   K      + +Q      +++   L++ G     DD    IG ++A  D +G  
Sbjct: 598 PAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGVA 657

Query: 402 LQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + +    V+       ++ R +  +    + E+ N      + N
Sbjct: 658 FGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPNVVRDLANGN 703



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 135 SGLYDFGPVGCALKNNIIQAWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 194

Query: 96  LADRNDK 102
                + 
Sbjct: 195 DVKNGEC 201


>gi|300724171|ref|YP_003713488.1| histidine tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
 gi|297630705|emb|CBJ91370.1| histidine tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
          Length = 426

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 64/421 (15%), Positives = 126/421 (29%), Gaps = 31/421 (7%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V + ++   +  G  E+  P ++   L+  + G   D   KEM    DRN
Sbjct: 15  LPAETAIWQRVESTVKRVLSGYGFSEIRTPIVEQTPLFKRAIGEVTDVVEKEMYTFDDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            +++   P +          H   Y      +Y     FR E   +    R R+F    A
Sbjct: 75  GESLTLRPENTAGCVRAGIQHGLLYNQEQRLWYI-GPMFRYERPQKG---RYRQFHQLGA 130

Query: 161 YSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
             F    P+            +  +     +        S     +     +   +  + 
Sbjct: 131 EVFGLQGPDIDAEMILMTARWWRELGIADHVTLELNSIGSLEARANYREALVAFLEQHKE 190

Query: 220 QVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP----- 272
           ++   C +     P+   ++   +I  L +   +      A S  H + L   L      
Sbjct: 191 KLDEDCQRRMYTNPLRVLDSKNPEIQQLLNDAPELFDYLDAESKAHFDGLCQILDSTGIK 250

Query: 273 -ENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGA 321
               +   RG++     +F       G + ++     + G     G         + +G 
Sbjct: 251 YRINQRLVRGLDYYNRTVFEWVTSALGAQGTICAGGRYDGLVEQLGGKAATPAVGFAMGM 310

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R+V  V E + D    +    V                     EKI  +L +    +  
Sbjct: 311 ERMVLLVQEINPDFVADLRVADVYLSSFGEG----SQHAALILAEKIRDQLPE--LRLMT 364

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +  G     Q   A   G  + +++G   +    + +K    G +E +  + +    S  
Sbjct: 365 NHGGGNFKKQLVRAGKHGAKVALLLGEDEIQAGNITVKDLRNGEQETLPQQTIAARLSEL 424

Query: 442 F 442
            
Sbjct: 425 L 425


>gi|312870368|ref|ZP_07730493.1| histidine--tRNA ligase [Lactobacillus oris PB013-T2-3]
 gi|311094069|gb|EFQ52388.1| histidine--tRNA ligase [Lactobacillus oris PB013-T2-3]
          Length = 425

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 62/414 (14%), Positives = 122/414 (29%), Gaps = 18/414 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G    LP      + V A  RE   + G   +  P  +   ++        D   KEM  
Sbjct: 8   GTADLLPGTTGLWEKVEANAREVFRQFGYRGIRTPMFEDYRVFARNVGDTSDIVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   +  +         P+  Y +   FR E        R R
Sbjct: 68  FHDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYKVYYMGPMFRYERPQSG---RQR 124

Query: 154 EFLMKDAY-SFDLTPEGSKHSYNKMFV--------SYLRIFHRLGLKSIPMRAESGPIGG 204
           EF         + +P+                   +   + + LG K +        I  
Sbjct: 125 EFHQIGVEALNNESPQIDVEVIAMAMALFKKFGVPNVKLVINTLGDKQVRQDYREALINY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              H   + AD+ E         +D     +     D  S+   ++  +  Y        
Sbjct: 185 LKPHYDELSADSQERLYKNPLRVLDSKDEGDQKLVADAPSILDYLDDESQSYFDQVQKLL 244

Query: 265 EKL-FDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           ++L  D   +   V         IF             T   A G+ + +     G    
Sbjct: 245 KELGIDYEIDTNMVRGLDYYNHTIFEIMSDSPVFGGGYTTVCAGGRYNGLISQLGGPEEG 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            +   +                AP     + + + D    +   ++ +++ + G     D
Sbjct: 305 GIGFGMGVERLMLLLQQENPDFAPQDQLDLFLASADDQGDNLAFEVLSKVRQQGIVADKD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             G ++G Q   A         + G + VS+ + ++K+  T    D+ + + + 
Sbjct: 365 YSGVKVGKQIKEAFRRNAKYFAVFGDREVSEGQFQLKNAATKDAVDVKVADFVA 418


>gi|168059486|ref|XP_001781733.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666817|gb|EDQ53462.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 623

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/419 (14%), Positives = 124/419 (29%), Gaps = 86/419 (20%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +    + +S   LPF   QI   +R+E+ PR G MR REF M +   F
Sbjct: 184 YMRPETAQGIFVNFRDLYYESGNKLPFAAAQIGSAYRNEIAPRQGPMRVREFTMAEIEHF 243

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---------------------- 201
               + S   +  +    + +F R    ++    E                         
Sbjct: 244 VNPDDKSHPKFKSVENLVVYLFPRAEQMALRDHVEMRIGDAVAQGIVDNETLGYFIARTY 303

Query: 202 ---------------IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
                               +       D  + ++ CS  + +    ++ + +D      
Sbjct: 304 LFLTKLGIDKKRLRFRQHLANEMAHYAQDCWDAEIECSYGWFECVGCADRSAYDLKAHTA 363

Query: 247 SIVEQWTAPYAATSDVHNEKL-----------------------------------FDSL 271
              ++ TA  +        +L                                      L
Sbjct: 364 KSGQELTAYESFAEPKDVVQLTIVPNKKVLGKEFRRDQKILSESLEAMNREEALALKAKL 423

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            E ++ + +    G  F   TK  + +        G++    +     G  R++  + E 
Sbjct: 424 EEKEKATYKVCSTGQEFTL-TKEMVAIEEKVVKTHGRNFTPSVIEPSFGIGRIMYCLYEH 482

Query: 332 SHDGKGIIWPD---SVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWD 382
               +  +  +   SV  F   +  IK         +V     + +   L++ G     D
Sbjct: 483 CFYLRPAVPGEQVSSVFRFPPIVAPIKCTVFPLMQREVLNVKSKAMSNGLTRAGVSNKLD 542

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             G  IG ++A  D +G P  + V         V ++ R +  +  +   EV++     
Sbjct: 543 ITGRSIGKRYARTDEVGIPFAITVDFDE----GVTVRERDSKQQVRIPDAEVVDVVRDL 597



 Score = 47.4 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G Y + P G +   NV  + R+         E+  P +    +   SG  D +   M++
Sbjct: 31 AGFYDYGPWGCQVETNVLNLWRQHFVMEEDMWEIRCPCVTPEVVLKASGHVDKFTDLMVK 90


>gi|192360368|ref|YP_001981969.1| histidyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
 gi|190686533|gb|ACE84211.1| histidyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
          Length = 423

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 65/437 (14%), Positives = 120/437 (27%), Gaps = 60/437 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        V A++ +   R G  E+  P +++ +L+  S G   D   KEM  
Sbjct: 9   GMNDLLPADSPLWQYVEAVVTDILARYGYQEIRFPIVEATELFKRSIGEVTDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            +   Y       + +   FR E   +    +  + 
Sbjct: 69  FEDRNGDSLTLRPEGTACCVRACEENGLLYNQ-TQRLWYMGPMFRHERPQKGRYRQFHQI 127

Query: 156 LMKDAYSFDLT------------------------------PEGSKHSYNKMFVSYLRIF 185
            ++                                         ++ +Y    VSYL   
Sbjct: 128 GVETFGIQGPDIDAEVLLLSARILRELGVGDAVQLQINSLGSAEARSAYKDALVSYLNQV 187

Query: 186 HRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
                +    R  + P  I          L +     +    +             D   
Sbjct: 188 AEQLDEDSKRRLGTNPLRILDSKDTSTQALLNNAPVLLDYLDEESHAHFEGLKQLLDAAG 247

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
               +  +             E + D L     V A G   G +   G K +        
Sbjct: 248 IAYQVNPRLVRGLDYYGKTAFEWVTDKLGAQSTVCAGGRYDGLVEQLGGKAT-------- 299

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                       + G G       ++  +              + +++ N+    Q    
Sbjct: 300 -----------PAVGFGIGLERLVLLVQALTVVPEGLDQQADVYLVAVGNV---QQQAFQ 345

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RL 422
             E+I   L      +     G    +Q   AD  G  + +I+G   V D KV +K  R 
Sbjct: 346 LAERIRDELP--FVRLLAHCGGGNFKNQLKKADKSGADIALILGEDEVRDGKVVVKFLRD 403

Query: 423 TGIREDMSLEEVINYAS 439
              ++ +S E+ +   +
Sbjct: 404 DVAQQTLSQEDAVTLLA 420


>gi|322695139|gb|EFY86952.1| glycyl-tRNA synthetase 1 [Metarhizium acridum CQMa 102]
          Length = 650

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 58/143 (40%), Gaps = 6/143 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              +++   +     G  R++ +++E  +  +       V    I +  +K      +++
Sbjct: 484 ETTREYTPNVIEPSFGIGRILYSILEHVYWNRPQDVAREVLSLPILVAPVKVLLVPLSNN 543

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +   + + ++L  +G     D     IG ++A  D LG PL + V    + D  V +
Sbjct: 544 PDFKPVIKSLASQLRAMGIANNVDSSSVSIGRRYARNDELGTPLGITVDFDTLKDESVTL 603

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R + ++   S +E++    + 
Sbjct: 604 RERDSRVQVRASQDEIVEAIRNL 626



 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 3/68 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           G+Y + P G   L N+    R+        +E+    +    +   SG  D +       
Sbjct: 46  GLYDYGPPGCALLANIVNEWRKHFVIEENMLEIDCTAITPEAVLKTSGHVDKFAD--WMC 103

Query: 97  ADRNDKAM 104
            D      
Sbjct: 104 KDPVKGEY 111


>gi|307822496|ref|ZP_07652727.1| histidyl-tRNA synthetase [Methylobacter tundripaludum SV96]
 gi|307736100|gb|EFO06946.1| histidyl-tRNA synthetase [Methylobacter tundripaludum SV96]
          Length = 411

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 65/419 (15%), Positives = 125/419 (29%), Gaps = 30/419 (7%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADR 99
            LP            IR+     G  E+ +P ++  +L+  S G   D   KEM    DR
Sbjct: 1   MLPEQTPLWQYAELCIRDVLGAYGYSEIRLPIVEKTELFKRSIGEVTDIVEKEMYTFDDR 60

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           N  ++   P            H   +       +     +R E   +    R R+F    
Sbjct: 61  NGDSLTLRPEGTAGCLRACLEHGLLHNQ-VHRLWYYGPMYRHERPQKG---RYRQFFQLG 116

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFH-----RLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             ++ +           +     +        RL L S+   AE       L   F    
Sbjct: 117 VETYGMAGPDIDAELILIMDRLWKKLGIRDKVRLQLNSLGTIAERIVYRESLVGYFQGQL 176

Query: 215 DTGETQVF-----CSKDFMDFPIPSENTDFDDIISLNSIV--EQWTAPYAATSDVHN--- 264
           D  +              +D   P+      +   L   +  E      A T+ + +   
Sbjct: 177 DQLDEDSLRRLETNPLRILDTKNPAMRQVVANAPELMDYLGDESRQHFKAITTILDDLGI 236

Query: 265 -EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             ++   L       ++ +        G++ ++     + G   +       + G     
Sbjct: 237 GYEINSRLVRGLDYYSKTVFEWVTDELGSQGTVCAGGRYDGLIEQLGGKPNHAVGFAMGM 296

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
                +  + D   +  P  V   ++        +Q      E +   +   G  +  + 
Sbjct: 297 ERLLALMETLDNVQLARPVDVYMIRVGETA----EQEGMRFAETVRNEIP--GLKLQVNC 350

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG--IREDMSLEEVINYASH 440
            G    SQF  AD  G    +I+G   VS  +V +K        +++MS ++ I +   
Sbjct: 351 GGGSFKSQFKKADKSGAEFAIILGDDEVSRGEVSVKPLRNSELEQQNMSQQQAIEFLIE 409


>gi|322420563|ref|YP_004199786.1| histidyl-tRNA synthetase [Geobacter sp. M18]
 gi|320126950|gb|ADW14510.1| histidyl-tRNA synthetase [Geobacter sp. M18]
          Length = 428

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/408 (14%), Positives = 113/408 (27%), Gaps = 38/408 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
             ++ A  R      G  E+ +P L+  +L+  S     D   KEM    D+    +   
Sbjct: 20  WQHIEATARRVFELYGLSEIRIPILEKTELFCRSIGDATDIVEKEMYSFEDKGGNKVTMR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  H     +     Y +   FR E   +    R R+F    A    +  
Sbjct: 80  PEGTASVMRAYVEHKMHALDPVARLYYMGPMFRYERPQKG---RYRQFHQIGAEITGVAA 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCSK 225
                    M       F  LGL    ++  S   P    +  E +         + C  
Sbjct: 137 PTVDAQVLTML---THFFQELGLTEPSLQINSLGCPCCRPVYREALKKFLLDRIDMLCDD 193

Query: 226 DFMDFPIPSENTDFDDIISL------------NSIVEQWTAPYAATSDVHNE----KLFD 269
               +                               E           +        L  
Sbjct: 194 CKRRYDTNPLRALDCKSTGCQEATQGAPSMLDYLCAECGDHFDRTRKHLELVGTPYTLNK 253

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
            +        R          G + ++     + G   +    Q+   G        A++
Sbjct: 254 RMVRGLDYYTRTTFEMVTTLLGAQSAVAAGGRYDGLISEIGGPQIPGIGFAMGVERVALL 313

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
            +  D             +   + I A  +       ++ + L ++G  V  D  G+ + 
Sbjct: 314 LAEKDFS-----------RRPDLFIAALGEEAHAEAFRLMSALQRLGFAVEIDYEGKSLK 362

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL-EEVIN 436
           SQ   AD       +I+G   +S     +K+   G + D++L  + I+
Sbjct: 363 SQMRRADKFNSRFTLIIGGDELSRGTAPLKNMDGGTQADVALGADAIS 410


>gi|260061512|ref|YP_003194592.1| glycyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
 gi|88785644|gb|EAR16813.1| glycyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
          Length = 516

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 82/255 (32%), Gaps = 20/255 (7%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       GE + +             +    +        E+  A YA  
Sbjct: 260 FRMREFEQMEMQFFIRPGEQKKWYEHWKAARMQWHLSLGLGEENYRFHDHEKL-AHYADA 318

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSY 317
           +     +      E + + +R       F      KYS      F     + +   +   
Sbjct: 319 AADIEFRFPFGFKELEGIHSR-----TDFDLANHEKYSGKKLQYFDPELNEHYTPYVVET 373

Query: 318 GIGAMRVVAAVIESS---------HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            IG  R+  AV             +    +  P  +AP K +++ +   D    +   +I
Sbjct: 374 SIGLDRMFLAVFSHCLQEEDLGDGNTRTVLRLPGVLAPTKAAILPLIKRD-GLPELAREI 432

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L     +V +D+    +G ++   D  G P+ + V  + + D  V ++HR +  +E 
Sbjct: 433 LDDLK-WDFNVQYDEKDA-VGRRYRRQDAAGTPICITVDHQSLEDRTVTLRHRDSMEQER 490

Query: 429 MSLEEVINYASHRFS 443
           + ++++ +       
Sbjct: 491 VPIDQLGSLIGREVD 505


>gi|194209766|ref|XP_001500496.2| PREDICTED: similar to Glycyl-tRNA synthetase (Glycine--tRNA ligase)
           (GlyRS) [Equus caballus]
          Length = 829

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 75/283 (26%), Gaps = 24/283 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 519 FRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKE 578

Query: 241 --------------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                          I        +    Y A  D       + L   K       E G 
Sbjct: 579 PKTVNVVQFEPNKGAIGKAYKKDAKLVMEYLAVCDECYITEMEELLNEKGEFTVETE-GK 637

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            F              K    ++    +     G  R++  V E +   +      +   
Sbjct: 638 TFQLTKDMVNVKRFQ-KTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFS 696

Query: 347 FKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           F   +   K      + +Q      +++   L++ G     DD    IG ++A  D +G 
Sbjct: 697 FPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGV 756

Query: 401 PLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHR 441
              + +    V+       ++ R +  +    + E+ +     
Sbjct: 757 AFGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPSVVRDL 799



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 235 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 294

Query: 96  LADRNDK 102
                + 
Sbjct: 295 DVKNGEC 301


>gi|94263257|ref|ZP_01287073.1| Histidyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
 gi|93456340|gb|EAT06464.1| Histidyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
          Length = 417

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 73/420 (17%), Positives = 123/420 (29%), Gaps = 18/420 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    +   +    RE   R G  E+ VP L+   L+  S     D   KEM  
Sbjct: 6   GFKDILPDEVASWQLIEQRARELFARFGFAEIRVPILEKTKLFARSIGEATDIVEKEMYT 65

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P     +   F  H    R      Y I   FR E   +  + +  + 
Sbjct: 66  FTDRNGDSLTMRPEGTASVLRAFIEHSLHLRQPLNKLYTIGPMFRHERPQKGRLRQFHQL 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            ++   S     +    +      + L +   L L S+   A   P       +F+    
Sbjct: 126 SVEALGSEHPRLDAEVIALAWSLAAELELNVSLELNSLGCPAC-RPAYRQRLVDFLQARR 184

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--- 272
           T   +  C +     P+   +         N+          A  D H   +   L    
Sbjct: 185 TQLCED-CQRRIDSNPLRVLDCKSQHCRQANAEAPAILDSLCAACDEHLAAVRHDLEALA 243

Query: 273 ---ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                     RG++      F   T      SA   G        Q+G    G       
Sbjct: 244 IPYRLNPFMVRGLDYYSRTTFELLTDDLGSQSAVGAGGRYDGLVKQLG----GPDLPGIG 299

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                     ++            + I A  +   D    +     + G     D  G  
Sbjct: 300 FAMGMERLVLLLQNQRRLTPPGPELFIAALGEAAADFAFALLHNCRRQGLRAVMDVQGRG 359

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           + +Q   AD LG    +I+G   ++  +  ++   + +  D+ L +     S   +  RP
Sbjct: 360 LKNQMKQADRLGAAHVLIIGEDELNRGRATLRDMGSKLETDVLLSD--EDLSELIATIRP 417


>gi|330718278|ref|ZP_08312878.1| histidyl-tRNA synthetase [Leuconostoc fallax KCTC 3537]
          Length = 433

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 70/418 (16%), Positives = 124/418 (29%), Gaps = 19/418 (4%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSY 89
           I Q  KG    LP   +   +V  I R      G  E+  P  ++ D++  S     D  
Sbjct: 5   IFQRPKGTADLLPQQTEQWQHVEGIARLLFGDYGFKEIRTPHFENFDVFSRSAGDTSDVV 64

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRF 147
            KEM    D+ D+ M   P     +   +  +         P+  + I   FR E     
Sbjct: 65  TKEMYDFYDKGDRHMALRPEGTAGIVRAYVENKLYGPEFDKPYKAFYIGPMFRYERPQAG 124

Query: 148 GVMRSREFLMKDAYSFDL-TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP----- 201
              R R+F    A +F   +P             +  +  +    +I    +        
Sbjct: 125 ---RFRQFHQIGAEAFGAVSPALDVEIIAMAVDFFKTLGLKNLKVAINTLGDKTSRDAYR 181

Query: 202 ---IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYA 257
              I     H   +  D+ E         +D   P +     D  S+ + +  +    + 
Sbjct: 182 QALIDYLKPHFDELSHDSQERLEKNPLRVLDSKDPKDQIFVADAPSILDYLTPESQNHWQ 241

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++      D   +   V         IF       SL  SAT  G       V+   
Sbjct: 242 RVQELLTALDLDFEVDTSMVRGLDYYNDTIFEIMTADESLKGSATIAGGGRYSGLVEQFG 301

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
                       +E                  +    +   D        +I   +   G
Sbjct: 302 GPETPGVGFGIGVERLIGLLEAQHVTFKNDNDLDFYVVNIGDDT-DTIATQIVQAIRSYG 360

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
                D +     +QF  AD       V +G + +++   ++K+ LTG + D+ L ++
Sbjct: 361 YMAERDYLARSPKAQFKSADRGHAKFVVTIGEQELANHSAKLKNMLTGQQLDVKLADL 418


>gi|261493283|ref|ZP_05989810.1| histidine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496473|ref|ZP_05992853.1| histidine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307676|gb|EEY08999.1| histidine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311133|gb|EEY12309.1| histidine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 425

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 127/418 (30%), Gaps = 37/418 (8%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               V   +R      G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWVEQKVRNVLASYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYS 162
            P                Y N    +Y +   FR E       R       E        
Sbjct: 80  RPEGTAGCVRAAIERGWIYNNEQRLWY-MGPMFRHERPQKGRYRQFHQAGVEVFGIANPE 138

Query: 163 FDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            D           K            + +G         S  +    +H  ++  +  E 
Sbjct: 139 IDAELIILTARLWKELGIDQHVSLQLNSIGSLEARANYRSALVKFLENHTALMNEEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKR 276
            V      +D    +     +D   L   ++      +         L D++    E   
Sbjct: 199 LVKNPLRILDTKNEALQNVLNDAPKLLDYLDDD----SREHFTQLCALLDAMGIRYEVNP 254

Query: 277 VSARGIEV--GHIFY-------FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVV 325
              RG++     +F         G++ ++     + G       H  Q   + +G  R+V
Sbjct: 255 KLVRGLDYYNKTVFEWVTSALALGSQGTVCGGGRYDGLVEQLGGHATQGVGFAMGLERLV 314

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             V E + +       D    F      +           E+I + L  VG        G
Sbjct: 315 LLVQEVNKEIDLPKTVDVYIVFSGEGATLN-----AFQLAEQIRSELPHVGVMTHC--SG 367

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
            +   QF  AD +   + +++G   V++ +V IK   +G  +  ++  E+I   S RF
Sbjct: 368 GKFQKQFKRADKVEAQIALVIGESEVAEKQVVIKDLRSGAEQITIAQSELIAELSKRF 425


>gi|148241257|ref|YP_001226414.1| histidyl-tRNA synthetase [Synechococcus sp. RCC307]
 gi|166228625|sp|A5GQA2|SYH_SYNR3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|147849567|emb|CAK27061.1| Histidyl-tRNA synthetase [Synechococcus sp. RCC307]
          Length = 414

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 65/406 (16%), Positives = 117/406 (28%), Gaps = 11/406 (2%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP        +    RE   R+   E+  P L++ +L+        D  GKEM  
Sbjct: 9   GMVDLLPAATSRWQWLEQTAREHFRRSCIREIRTPLLEATELFARGIGEATDVVGKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DR D++    P     +      H    +     +Y     + +     R R      
Sbjct: 69  FNDRGDRSCTLRPEGTASVVRAAIQHGLLSQGAQRLWYGGPMFRYERPQGGRQRQFHQIG 128

Query: 153 REFLMKDAYSFDLTPEG--SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            EFL       D+                      + LG +          +G     + 
Sbjct: 129 IEFLGFADPRSDVEAIAIAWDLLEALGITGLQLELNSLGSRVDRQTYRDALVGWLSERQN 188

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            + AD+ +         +D   P       D  +L   +   +             L   
Sbjct: 189 QLDADSQQRLATNPLRILDSKNPQTQQLLQDAPNLEQSLSDPSRERYEQVKAGLSALKIP 248

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
              N R+       GH  +  T  +L   AT     G   Y  +     G          
Sbjct: 249 YLCNPRLVRGLDYYGHTAFEITSDALGAQATV---CGGGRYDGLVEQLGGPAAACVGWAM 305

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                  ++  +S       ++ I   +         +  +L ++G  V  D  G   G 
Sbjct: 306 GLERLMLLLGDESQQSQPPDVVVISQGN-AAEALAVPVARQLRQIGQAVDVDLSGAGFGK 364

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           Q   A   G    V++G +  S  +++ K   +G    ++L+ +  
Sbjct: 365 QLKRAGKSGARWAVLIGDEEASSGQLQRKDLHSGDSSTIALQSLAE 410


>gi|312879303|ref|ZP_07739103.1| prolyl-tRNA synthetase [Aminomonas paucivorans DSM 12260]
 gi|310782594|gb|EFQ22992.1| prolyl-tRNA synthetase [Aminomonas paucivorans DSM 12260]
          Length = 501

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 96/266 (36%), Gaps = 14/266 (5%)

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            +  S          F+  ++    +   +    D  +    T  +    +  +VE+   
Sbjct: 155 NQWCSVMRWEKRPRLFLRTSEFLWQEGHTAHATRDEAMEETLTMLEVYRRI--MVEELAL 212

Query: 255 PYAATSDVHNEKLFDS----LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           P  A      E+   +      E      + ++ G   + G  ++      F+  DG+  
Sbjct: 213 PVVAGEKSEGERFPGADNTFTCEAMMSDKKALQAGTSHFLGQNFAKAFEIAFQDQDGQVQ 272

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ----VCRDACE 366
           +    S+G+ + R++ A+I +  D  G++ P  VAP K++L+ I   ++           
Sbjct: 273 FAWTTSWGV-STRLIGALIMTHADDDGLVLPPHVAPVKVALLPISTDEERLASDLEPKAR 331

Query: 367 KIYARLSKV-GCD-VFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           ++   L    G   V  D     + G +F      G PL++ +G +   + +V    R T
Sbjct: 332 ELVTALEARLGRRSVALDTQYHMRPGDRFFSHLQKGVPLRLELGEREWQEGRVRAVRRDT 391

Query: 424 GIREDMSLEEVINYASHRFSNNRPVL 449
           G + D+  + +           +  L
Sbjct: 392 GEKIDLPWDRLAEEVPAILEQIQQNL 417



 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 6/153 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G     P G    + +     E    TG +    P L     L  E+   + +  E   +
Sbjct: 55  GCMVVRPTGYSIWEVIQKHFDEGFKETGHVNAYFPLLIPHSFLEKEAQHVEGFAPECAVV 114

Query: 97  ADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
                + +       PT E V+  ++   ++S+R+LP    Q     R E RPR   +R+
Sbjct: 115 THAGGEELEEPLVVRPTSETVIGHMYSKWVQSWRDLPLLINQWCSVMRWEKRPRL-FLRT 173

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
            EFL ++ ++   T + +      M   Y RI 
Sbjct: 174 SEFLWQEGHTAHATRDEAMEETLTMLEVYRRIM 206


>gi|229846456|ref|ZP_04466564.1| histidyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
 gi|229810549|gb|EEP46267.1| histidyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
          Length = 423

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 69/416 (16%), Positives = 133/416 (31%), Gaps = 35/416 (8%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y     FR E   +    +  +  ++     +  
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWYI-GPMFRHERPQKGRYRQFHQAGVEVFGIANPE 138

Query: 167 PEGSKHSYNKMFVSYLRIFH-------RLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +             L I          +G         S  +G   +H+ ++  +  + 
Sbjct: 139 IDAELIILTYRLWKALGIDQYVTLQLNSIGSLEARANYRSALVGFLENHQDLMSDEEKDR 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKR 276
            V      +D   P      D+   L   ++      +         L D++    E   
Sbjct: 199 LVKNPLRILDTKNPELQKVLDNAPKLLDYLDDE----SREHFEQLCALLDAVGIQYEINP 254

Query: 277 VSARGIEV--GHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAA 327
              RG++     +F       G + ++     + G       H      + +G  R+V  
Sbjct: 255 KLVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAMGLERLVLL 314

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           V E + +       D    ++     +        +  EK+ + L     +      G  
Sbjct: 315 VQEVNPNVPAKSAVDIYVVYQGEGATL-----AAFELAEKVRSELP--HLNTMLHCSGGN 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
              QF  AD  G  L +++G   V + +V +KH   G  ++ + L  +I+Y   +F
Sbjct: 368 FKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVNIIDYLQTQF 423


>gi|126208643|ref|YP_001053868.1| histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae L20]
 gi|126097435|gb|ABN74263.1| histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 413

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/415 (14%), Positives = 125/415 (30%), Gaps = 33/415 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               +   +R      G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 11  LWQWIENKVRNVLAGYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 69

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P                Y N    +Y +   FR E   +    R R+F       F + 
Sbjct: 70  RPEGTAGCVRAAIERGWIYNNEQRLWY-MGPMFRHERPQKG---RYRQFHQAGVEVFGIP 125

Query: 167 PEGSKHSYNKMF----------VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                     +                  + +G         S  +    +H  ++  + 
Sbjct: 126 NPEIDAELIILTARLWKELGIDQHVSLQLNSIGSLEARANYRSALVKFLENHTALMSDEE 185

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA------TSDVHNEKLFDS 270
            E  V      +D    +     +D   L   ++  +  + A       +     ++   
Sbjct: 186 KERLVKNPLRILDTKNQALQEVLNDAPKLLDYLDDDSREHFAHLCHLLDAMGITYEVNPK 245

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAV 328
           L        + +        G++ ++     + G       H  Q   + +G  R+V  V
Sbjct: 246 LVRGLDYYNKTVFEWVTSALGSQGTVCGGGRYDGLVEQLGGHATQGVGFAMGLERLVLLV 305

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E + +       D    +      +           E+I + L ++G        G   
Sbjct: 306 QEVNKEINLPKAVDVYVVYSGEGATLN-----AFQMAERIRSELPQLGVMTHC--SGGNF 358

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
             QF  AD +   + +++G   V    V +K   +G  +  ++  ++I   + RF
Sbjct: 359 KKQFKRADKVEAQIALVIGESEVEQQTVVLKDLQSGAEQVIIAQADLIAELTKRF 413


>gi|328773234|gb|EGF83271.1| hypothetical protein BATDEDRAFT_18426 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 699

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 6/144 (4%)

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA------HDQVC 361
           +++   +     G  R++ A++E S+  +      +V  F  S+  IKA      ++   
Sbjct: 536 REYTPNVIEPSFGIGRILYALLEHSYYVRESDEQRAVFKFPASVAPIKALVAPISNNAEF 595

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               ++I A L + G     DD    IG ++A  D LG P  + +  + V D  V ++ R
Sbjct: 596 SPFIKEIVASLRRSGVANKVDDSTSSIGRRYARNDELGTPFAITIDFQTVQDKTVTLRER 655

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            T  +   ++  ++    +     
Sbjct: 656 DTIKQIRSTIPIIVEIVHNLVEGR 679



 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G++ + P G    +N+ ++ R+        +E+    L    +   SG  D +   M++
Sbjct: 84  AGLFDYGPPGSALQNNILSLWRQHFVLEEDMLELECTNLTPESVLKTSGHVDRFSDAMVK 143

Query: 96  LADRND 101
                D
Sbjct: 144 DTKTGD 149


>gi|332864412|ref|XP_519025.3| PREDICTED: glycyl-tRNA synthetase isoform 4 [Pan troglodytes]
          Length = 739

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 84/312 (26%), Gaps = 24/312 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 404 TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 463

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 464 RSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICD 523

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 524 ECYITEMEMLLNEKGEFTIETE-GKTFQLTKDMVNVKRFQ-KTLYVEEVVPNVIEPSFGL 581

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 582 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRH 641

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 642 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISE 701

Query: 434 VINYASHRFSNN 445
           + +      + N
Sbjct: 702 LPSIVRDLANGN 713



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 145 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 204

Query: 96  LADRNDK 102
                + 
Sbjct: 205 DVKNGEC 211


>gi|83764945|dbj|BAE55089.1| unnamed protein product [Aspergillus oryzae]
          Length = 656

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
            + +++   +     G  R++ + +E  +  +       V  F  ++   K      ++ 
Sbjct: 491 ENVREYTPNVIEPSFGIGRILYSTLEHVYWSREGDEARGVLSFPPAIAPTKVLIVPLSNH 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              R    ++  ++ ++G     DD    IG ++A  D LG P  + V  + V D+   +
Sbjct: 551 ASFRPLSHRLMMKMRRMGISNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTL 610

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R +  +   S +E++        
Sbjct: 611 RDRDSTKQVRASEDEILQALKSLVE 635



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G   ++N+  + R+        +E+    L   ++   SG  + +   M +
Sbjct: 38 SGLYDYGPPGCALINNIVDLWRKHFVLEEDMLEVDCTMLTPHEILKTSGHVEKFADWMCK 97


>gi|182420365|ref|ZP_02951587.1| histidyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237668877|ref|ZP_04528861.1| histidine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182375731|gb|EDT73329.1| histidyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237657225|gb|EEP54781.1| histidine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 419

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 64/403 (15%), Positives = 118/403 (29%), Gaps = 16/403 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V ++ R      G  E+  P  +  +L++       D   KEM    D+ D+++   
Sbjct: 22  WHYVESVFRNVTKTYGIREIRTPIFEHTELFLRGVGDTTDIVQKEMYTFNDKGDRSITLK 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F  +       P   Y I   FR E   +    R R+F       F    
Sbjct: 82  PEGTAPAVRAFVENRLFNEAQPTKLYYITPAFRYENVQKG---RLRQFHQCGIEMFGSKE 138

Query: 168 EGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                 +      +  ++  +     I       P      +E +        +  C   
Sbjct: 139 PTMDVEAIKVAMDTLSKLGLKSLSLHINNLGC--PTCRAKYNEALKKFLQENYENLCDTC 196

Query: 227 FMDFPIPSENTDFDDIISLN---SIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARG 281
              F               N       Q         + H   + + L   E      +G
Sbjct: 197 KSRFEKNPMRILDCKEKRCNEITKNAPQILDYVCEECETHFNSVKEYLDVLEIPYEIDQG 256

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           I  G  +Y  T + +          G+   +     G     V  A+             
Sbjct: 257 IVRGLDYYTKTIFEIINDDFTVCGGGRYDKLISELGGPEMPAVGFAIGVERIIMTLENEG 316

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             +    +  + I A  +  +    K+ + L  +G     + MG  I ++   A+ LG  
Sbjct: 317 IEIPNDNLIDLYIAARGEEEKKTAFKLASDLRTLGGKCEINHMGRSIKAEMKFANKLGAA 376

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSL---EEVINYASHR 441
              I+G   +++ K+ +K    G   + SL   EE++   S +
Sbjct: 377 FTTILGEDELANKKINLKRMSDGEIFEASLENTEEIVKIISAK 419


>gi|167517733|ref|XP_001743207.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778306|gb|EDQ91921.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1312

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/325 (16%), Positives = 94/325 (28%), Gaps = 64/325 (19%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
             G Y   P       ++      E    G      P   S A L  E      +  E+  
Sbjct: 1046 SGCYILRPWAYSVWQSIQEFFDREIRARGVQNSYFPIFVSQAALEREKEHIADFAPEVAW 1105

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    +  +       PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 1106 VTRSGESELEKPIAVRPTSETVMYPAYAKWIQSHRDLPLKLNQWCNVVRWEFKQPTPFLR 1165

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            +REFL ++ ++   T   +     ++   Y R                            
Sbjct: 1166 TREFLWQEGHTAFATKPEADEEVLEILELYRR---------------------------- 1197

Query: 212  VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                         +      +P   T+ +               Y  T + +        
Sbjct: 1198 ----------VYEELLAVPVVPGRKTEKEKFA---------GGDYTTTVEAYI------- 1231

Query: 272  PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG-AMRVVAAVIE 330
                  + R I+     + G  +S      ++  D  D ++ +     G   R +  +I 
Sbjct: 1232 ----GANGRAIQGATSHHLGQNFSKMFGIKYQNPDKHDEFINVFQNSWGITTRTIGVMIM 1287

Query: 331  SSHDGKGIIWPDSVAPFKISLINIK 355
               D KG++ P  VA  +  +I   
Sbjct: 1288 VHGDDKGLVLPPRVASIQAIIIPTG 1312


>gi|310789482|gb|EFQ25015.1| glycyl-tRNA synthetase [Glomerella graminicola M1.001]
          Length = 664

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 95/300 (31%), Gaps = 27/300 (9%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
            +   V + +              ++  +      E +  AD     +         P+ 
Sbjct: 345 VDMSKVRFRQHMENEMAHYAADCWDAELLTSSGWIECVGCADRSAYDLSVHAKKTGAPLV 404

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP----ENKRVSARGIEVGHIFY 289
                 + +I     VE     +        + +  +L     E +   A+ +       
Sbjct: 405 VRERLDEPLIFEEWQVEIDKKKFGPQFKKDGKTVEAALEATTQEQREKLAKQLTDNGELE 464

Query: 290 FGTKYSLPMSATFKG-----------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                    +                 + +++   +     G  R++ ++IE  +  +  
Sbjct: 465 LEVAGVGSGTVKVSKDLVKIEFRKRIENTREYTPNVIEPSFGIGRILYSLIEHVYWNRAT 524

Query: 339 I-----------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                       +P +VAP K+ ++ + A+ Q  +    KI  +L K+G     D     
Sbjct: 525 EDGGDEARGVLSFPPTVAPTKVLIVPLSANKQ-FQPFINKISQKLRKIGISARVDSSSAT 583

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           IG +++  D LG PL + +  + V DS + ++ R +  +     E ++       +  + 
Sbjct: 584 IGKRYSRNDELGTPLGITIDFQTVQDSTITLRDRDSTKQVRADEETIVAAIQSLVTGAKE 643



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 10  ILQENPRDAEIASHKLMLRTGM-----IHQHSKGIYSWLPLGQKALDNVNAIIREEQN-R 63
            L+  P D ++    L  R        I+    G++ + P G     N+  I R+     
Sbjct: 7   TLKGQPLDRQVLDAMLRRRLFFTPAFEIYGGVAGLFDYGPPGCSLQANIVDIWRKHFILE 66

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
              +E+    L   ++   SG  D +   M +     D
Sbjct: 67  EDMLEIDTTVLTPHEVLKTSGHVDKFADWMCKDPKNGD 104


>gi|253682644|ref|ZP_04863441.1| histidine--tRNA ligase [Clostridium botulinum D str. 1873]
 gi|253562356|gb|EES91808.1| histidine--tRNA ligase [Clostridium botulinum D str. 1873]
          Length = 417

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/405 (13%), Positives = 116/405 (28%), Gaps = 16/405 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   ++E        E+  P  +  +L+        D   KEM    D+ D+++   
Sbjct: 20  WHYIEGKLKELAGEYALKEIRTPIFEHTELFERGVGETTDVVQKEMYTFKDKGDRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
                     F  +      LP   +     FR E   +  + +  +F ++   S + + 
Sbjct: 80  AEGTAPAARAFIENGLFNEALPIKMFYFTPVFRYENVQKGRLRQHHQFGVEVFGSSEASV 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +               I +     +     E      D   E+    +  E    C   +
Sbjct: 140 DAEIIGLAMRAFKEFGINNLELNINNIGCPECRKKYNDALREYFKN-EYNELCDTCKTRY 198

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSARG 281
              P+   +        +                 H E L   L       +      RG
Sbjct: 199 ERNPMRLLDCKNKKCKEIGKDAPVILDYVCDDCKNHFENLKTYLDALSIEYKVNPYIVRG 258

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ-MGSYGIGAMRVVAAVIESSHDGKGIIW 340
           ++      F    +          +G    +    +  +G    +  +I +  +    I 
Sbjct: 259 LDYYTKTVFEIINNDITVCGGGRYNGLIEEIGGKPTPAVGFGMGIERLILTLGENNIEIP 318

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
                        + +  +  +    K+   L K G     D M + + +Q   A+ +  
Sbjct: 319 KPKEIDIY-----VGSMGERGKIESFKVVNELRKKGIKAECDHMNKSVKAQMKYANKIEA 373

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              +I+G   + + K  +K    G + ++SL  + +  +    NN
Sbjct: 374 LYSMIIGETEIEEGKANLKRMEDGQQFEVSLNNL-DEIATMILNN 417


>gi|289809607|ref|ZP_06540236.1| hypothetical protein Salmonellaentericaenterica_36347 [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 70

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 23/62 (37%)

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             E+IG +     L   P  ++ G K V   KV ++ R       + + +VI        
Sbjct: 2   RNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVNDVIEKLQQEIR 61

Query: 444 NN 445
           + 
Sbjct: 62  SR 63


>gi|217069510|gb|ACJ83242.1| Rv2357c antigen [Mycobacterium tuberculosis]
          Length = 368

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 108/351 (30%), Gaps = 39/351 (11%)

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           +  +        +   T + +  +       + +  PF   QI   FR+E+ P   + R+
Sbjct: 55  LGPIETEEGLHYLRPETAQGIFVNFANVVTTARKKPPFGIGQIGKSFRNEITPGNFIFRT 114

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REF   +   F   P  +K  +     + L+ +  LG++   +R                
Sbjct: 115 REFEQMEMEFFVE-PATAKEWHQYWIDNRLQWYIDLGIRRENLRL--------------- 158

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                           + P    +   D  + +         P+     V N   FD   
Sbjct: 159 ---------------WEHPKDKLSHYSDRTVDIEYKFGFMGNPWGELEGVANRTDFDLS- 202

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                 AR   V   FY             + A G                         
Sbjct: 203 ----THARHSGVDLSFYDQINDVRYTPYVIEPAAGLTRSFMAFLIDAYTEDEAPNTKGGM 258

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                +     +AP K +++ +  H          + A L K   ++ +DD G  IG ++
Sbjct: 259 DKRTVLRLDPRLAPVKAAVLPLSRH-ADLSPKARDLGAELRKCW-NIDFDDAGA-IGRRY 315

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              D +G P  V V    + D+ V ++ R    ++ +++  V +Y + R  
Sbjct: 316 RRQDEVGTPFCVTVDFDSLQDNAVTVRERDAMTQDRVAMSSVADYLAVRLK 366


>gi|71756227|ref|XP_829028.1| glycyl-tRNA synthetase [Trypanosoma brucei TREU927]
 gi|70834414|gb|EAN79916.1| glycyl-tRNA synthetase, putative [Trypanosoma brucei]
          Length = 624

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 96/300 (32%), Gaps = 27/300 (9%)

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF---- 227
            +    +V + +              ++  +      E + +AD     +          
Sbjct: 311 EAVGARYVRFRQHLRNEMAHYAQDCWDAELLTSYGWVECVGVADRSAYDLTQHSGATKKD 370

Query: 228 ----MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                +F  P         +   +I + +        +  N    D   E  +  + G  
Sbjct: 371 LCAREEFAEPRTERQLQRKLQKGAIGKAFGKNAGDVMEYLNTAPDDVCVELSKKLSGGGS 430

Query: 284 VGHIFYFG---TKYSLPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           V      G   +  S  +   +K     G+     +     G  R++ A++E S+  +  
Sbjct: 431 VDITTDRGFTASITSNMVQFEYKDVKVTGRSFIPSVIEPSFGVGRILYALLEQSYWVRRD 490

Query: 339 IWPDSVA-----------PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
               +             P K+++  +    ++ R   E+I  R+   G     DD G  
Sbjct: 491 ESAKNEKRAVFGLRPLIAPQKVAVFPLLMKPELIRTV-EEIKERMLLHGISTRTDDSGAS 549

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           IG ++A  D LG P  V    +  +D  V ++ R +  +  +  E+V +  +      RP
Sbjct: 550 IGKKYARVDELGVPFCVTCDME--NDGCVTLRERDSAQQVRIPKEKVADIVAEMCRPLRP 607



 Score = 41.3 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAI-EMSVPTLQSADLWVESGRYDSYGKEML 94
           S G+Y   P       N+ A  R+      ++ E+    L   +++V SG    +   M+
Sbjct: 37  SAGLYDMGPPLCAMKANLLAHWRQHFVLAESMCEVDTTCLTPQEVFVTSGHVTRFNDVMV 96

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           R     +         E   T +  S + S + 
Sbjct: 97  RDTVTGECIRADKFLEEYCETQLRDSQLSSEQR 129


>gi|53729067|ref|ZP_00134163.2| COG0124: Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|303250075|ref|ZP_07336277.1| histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307246091|ref|ZP_07528173.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307252816|ref|ZP_07534706.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307255072|ref|ZP_07536890.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307257231|ref|ZP_07539002.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|307259509|ref|ZP_07541234.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|307261658|ref|ZP_07543325.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|302651138|gb|EFL81292.1| histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306853026|gb|EFM85249.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306859715|gb|EFM91738.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306861945|gb|EFM93921.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306864273|gb|EFM96185.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306866445|gb|EFM98308.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306868650|gb|EFN00460.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 423

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/415 (14%), Positives = 125/415 (30%), Gaps = 33/415 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               +   +R      G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIENKVRNVLAGYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P                Y N    +Y +   FR E   +    R R+F       F + 
Sbjct: 80  RPEGTAGCVRAAIERGWIYNNEQRLWY-MGPMFRHERPQKG---RYRQFHQAGVEVFGIP 135

Query: 167 PEGSKHSYNKMF----------VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                     +                  + +G         S  +    +H  ++  + 
Sbjct: 136 NPEIDAELIILTARLWKELGIDQHVSLQLNSIGSLEARANYRSALVKFLENHTALMSDEE 195

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA------TSDVHNEKLFDS 270
            E  V      +D    +     +D   L   ++  +  + A       +     ++   
Sbjct: 196 KERLVKNPLRILDTKNQALQEVLNDAPKLLDYLDDDSREHFAHLCHLLDAMGITYEVNPK 255

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAV 328
           L        + +        G++ ++     + G       H  Q   + +G  R+V  V
Sbjct: 256 LVRGLDYYNKTVFEWVTSALGSQGTVCGGGRYDGLVEQLGGHATQGVGFAMGLERLVLLV 315

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E + +       D    +      +           E+I + L ++G        G   
Sbjct: 316 QEVNKEINLPKAVDVYVVYSGEGATLN-----AFQMAERIRSELPQLGVMTHC--SGGNF 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
             QF  AD +   + +++G   V    V +K   +G  +  ++  ++I   + RF
Sbjct: 369 KKQFKRADKVEAQIALVIGESEVEQQTVVLKDLQSGAEQVIIAQADLIAELTKRF 423


>gi|254168570|ref|ZP_04875413.1| histidyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289595732|ref|YP_003482428.1| histidyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197622404|gb|EDY34976.1| histidyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289533519|gb|ADD07866.1| histidyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 415

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 62/421 (14%), Positives = 129/421 (30%), Gaps = 30/421 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G     P   +A   V   I       G  E+  P+++  DL+  +SG  +   K+    
Sbjct: 7   GFRDMYPEYMRARRIVFDKICSVARSFGFHEVDTPSVELLDLFRIKSG--EEIVKQTFSF 64

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     ++ +     +     P  ++     +R E        R REF 
Sbjct: 65  VDKGGREITLIPELTPSVSRMIA--ARKDLIKPVKWFSFPKMWRYEEPQSG---RLREFY 119

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFIVLA 214
             +A  F +    +      + +  L      G   +    R     +   L+ E I  A
Sbjct: 120 QFNADIFGVANITADAEVMALAMEILDSLGLKGKYVMKFSDRILMEELLRSLNIEKIEEA 179

Query: 215 -------DTGETQVFCSKDF---MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                  D    + F  +      +  + S  +       +++I+ ++     +      
Sbjct: 180 FRIIDKKDKIPEERFYEEMLKITSEENVDSLISLLKLSGDVDTILSKFEHFERSEILASL 239

Query: 265 EKLFDSLPEN---KRVSARGI--EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           + L  +  +         RG+    G +F          +    G   +   +       
Sbjct: 240 KDLLKAYGKTATLDLSIVRGLAYYTGVVFEVHDANGEFRAVLGGGRYDRVVELFGAQPTP 299

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                +   +      +  +WP+        +  I       R    +I   L + GC V
Sbjct: 300 AVGFGMGDAVLELLMRREGVWPEEKIEVDYFIAII----PGFRKEAIEIAMELRRSGCVV 355

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             D     IG Q   A  +     +IVG   + + +V +K   +G + ++ + E+     
Sbjct: 356 DIDLSRRSIGKQLKYAHRINAKYTIIVGE-EIKNGEVALKDMESGEQRNVKIGELKEVIE 414

Query: 440 H 440
            
Sbjct: 415 K 415


>gi|258571682|ref|XP_002544644.1| glycyl-tRNA synthetase [Uncinocarpus reesii 1704]
 gi|237904914|gb|EEP79315.1| glycyl-tRNA synthetase [Uncinocarpus reesii 1704]
          Length = 641

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 89/296 (30%), Gaps = 23/296 (7%)

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
            K   ++  V   +              ++  +      E +  AD     +   K    
Sbjct: 326 MKIGIDQSKVRMRQHMANEMAHYATDCWDAELLTSYGWIECVGCADRSAYDLSVHKKKTG 385

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAA---TSDVHNEKLFDSL--------------- 271
            P+    T  + +      ++     +           E   D+L               
Sbjct: 386 APLVVRETRAEPLRIEEWQIDIDRKKFGPRFKKDGKTVEAAIDALSQELREKLALDLTKD 445

Query: 272 ----PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E + V+   +E+G       K +   +      +  +    +G      M     
Sbjct: 446 GKISVEVENVNDGKVELGKDLIQIEKRTRVENVREYTPNVIEPSFGIGRILYCLMEQTYW 505

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
             E       + +P  VAP K+ L+ + +H         ++  +L ++G     DD    
Sbjct: 506 SREGDEARGVLSFPPIVAPTKVLLVPLSSHSSFQ-PLVRQLTLKLRRMGVSNRVDDSSAS 564

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           IG ++A  D LG P  + V  + V D+   ++ R +  +   S +E+         
Sbjct: 565 IGKRYARNDELGTPFGITVDFQSVKDNTFTLRDRDSMKQVRASEDEICKAVKSLVE 620



 Score = 38.6 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 12/59 (20%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G++ + P G     N+  I R+              +   D+   SG  D +   M +
Sbjct: 36 SGLFDYGPPGCALQANIVDIWRKHF------------VLEEDMLETSGHVDKFADWMCK 82


>gi|224075451|ref|XP_002304639.1| predicted protein [Populus trichocarpa]
 gi|222842071|gb|EEE79618.1| predicted protein [Populus trichocarpa]
          Length = 691

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 88/312 (28%), Gaps = 20/312 (6%)

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                G    R +L       D      +         Y        ++S     E   I
Sbjct: 361 NNETLGYFIGRVYLFLTRLGIDKDRLRFRQHLANEMAHYAADCWDAEIESSYGWIECVGI 420

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               +++    ++     +   + F +     +         L    +          + 
Sbjct: 421 ADRSAYDLHAHSEKSGVPLVAHEKFSEPKEVEKLVIAPVKKELGLAFKGNQKKVVEALEA 480

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-----ADGKDHYVQMGSY 317
            NEK   +L     +  +G    ++   G K ++  +             +     +   
Sbjct: 481 MNEKE--ALDMKASLETKGEVEFYVCTLGEKVTIKKNMVSISKEKKKEHQRTFTPSVIEP 538

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSV---APFKISLINIK------AHDQVCRDACEKI 368
             G  R++  + E S   +     D       F   +  IK        +Q   D  + I
Sbjct: 539 SFGIGRIIYCLYEHSFYMRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEDVAKII 598

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L+  G     D  G  IG ++A  D LG P  + V    +S   V I+ R +  +  
Sbjct: 599 SKTLTAAGISHKIDITGTSIGKRYARTDELGVPFAITVD--SIS--SVTIRERDSKDQIR 654

Query: 429 MSLEEVINYASH 440
           + +EE       
Sbjct: 655 VDVEEAAPVVKS 666



 Score = 53.2 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAI 67
           +E  R A + + +  L    +  I++   G+Y + P G     NV +  R+        +
Sbjct: 75  KEAFRQAVVNTLERRLFYIPSFKIYRGVAGLYDYGPPGCAVKSNVLSFWRQHFVLEENML 134

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
           E+  P +    +   SG  D +   M++   
Sbjct: 135 EVDCPCVTPEVVLKASGHVDKFTDLMVKDEK 165


>gi|148666303|gb|EDK98719.1| glycyl-tRNA synthetase, isoform CRA_b [Mus musculus]
          Length = 741

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/286 (10%), Positives = 76/286 (26%), Gaps = 22/286 (7%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 431 FRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKE 490

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-------------VGHI 287
                    E              + + + L          +E              G  
Sbjct: 491 PKTVNVVQFEPNKGAVGKAYKKDAKLVLEYLSACDECYISEMELLLSEKGEFTIETEGKT 550

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F              K    ++    +     G  R++  ++E +   +      +   F
Sbjct: 551 FQLTKDMVSVKRFQ-KTLHVEEVVPSVIEPSFGLGRIMYTILEHTFHVREGDEQRTFFSF 609

Query: 348 KISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
              +   K      + +Q      +++   L++ G     DD    IG ++A  D +G  
Sbjct: 610 PAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGVA 669

Query: 402 LQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + +    V+       ++ R +  +    + E+ +      + N
Sbjct: 670 FGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPSVVRDLANGN 715



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 147 SGLYDFGPVGCALKNNIIQAWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 206

Query: 96  LADRNDK 102
                + 
Sbjct: 207 DVKNGEC 213


>gi|18256043|gb|AAH21747.1| Glycyl-tRNA synthetase [Mus musculus]
          Length = 729

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/286 (10%), Positives = 76/286 (26%), Gaps = 22/286 (7%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 419 FRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKE 478

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-------------VGHI 287
                    E              + + + L          +E              G  
Sbjct: 479 PKTVNVVQFEPNKGAVGKAYKKDAKLVLEYLSACDECYISEMELLLSEKGEFTIETEGKT 538

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F              K    ++    +     G  R++  ++E +   +      +   F
Sbjct: 539 FQLTKDMVSVKRFQ-KTLHVEEVVPSVIEPSFGLGRIMYTILEHTFHVREGDEQRTFFSF 597

Query: 348 KISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
              +   K      + +Q      +++   L++ G     DD    IG ++A  D +G  
Sbjct: 598 PAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGVA 657

Query: 402 LQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + +    V+       ++ R +  +    + E+ +      + N
Sbjct: 658 FGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPSVVRDLANGN 703



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 135 SGLYDFGPVGCALKNNIIQAWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 194

Query: 96  LADRNDK 102
                + 
Sbjct: 195 DVKNGEC 201


>gi|213963286|ref|ZP_03391543.1| glycyl-tRNA synthetase [Capnocytophaga sputigena Capno]
 gi|213954148|gb|EEB65473.1| glycyl-tRNA synthetase [Capnocytophaga sputigena Capno]
          Length = 516

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 84/255 (32%), Gaps = 20/255 (7%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       G  Q +             +    +        E+      A 
Sbjct: 260 FRMREFEQMEMQFFIKPGTQQQWYEYWKETRLKWHLSLGMGEENYRYHPHEKLAHYADAA 319

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSY 317
            D+   +      E + + +R       F  G   KYS      F   +   +   +   
Sbjct: 320 CDI-EFRFPFGFKELEGIHSR-----TNFDLGNHEKYSGKKMQYFDPEEKVSYTPYVLET 373

Query: 318 GIGAMRVVAAV---------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            IG  R+  AV         +E       +  P  +AP K++++ +   D    +  E+I
Sbjct: 374 SIGLDRMFLAVFSNSLQEEALEGGDTRTVLRLPFVLAPTKVAVLPLLKKD-GLPEVAEQI 432

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L     +V +D+    +G ++   D +G P  V V  + + D+ V ++HR T  +  
Sbjct: 433 VNELK-YDFNVAYDEKDA-VGRRYRRQDAVGTPFCVTVDHQTLEDNTVTLRHRDTMEQVR 490

Query: 429 MSLEEVINYASHRFS 443
           +++ E+    +    
Sbjct: 491 IAIPELRATIAKEVD 505


>gi|190150503|ref|YP_001969028.1| histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263846|ref|ZP_07545451.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|229558640|sp|B3GY63|SYH_ACTP7 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189915634|gb|ACE61886.1| histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306870835|gb|EFN02574.1| Histidyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 423

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 66/419 (15%), Positives = 129/419 (30%), Gaps = 41/419 (9%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               +   +R      G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIENKVRNVLAGYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P                Y N    +Y +   FR E   +    R R+F       F + 
Sbjct: 80  RPEGTAGCVRAAIERGWIYNNEQRLWY-MGPMFRHERPQKG---RYRQFHQAGVEVFGIP 135

Query: 167 PEGSKHSYNKMF----------VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                     +                  + +G         S  +    +H  ++  + 
Sbjct: 136 NPEIDAELIILTARLWKELGIDQHVSLQLNSIGSLEARANYRSALVKFLENHTALMSDEE 195

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---E 273
            E  V      +D    +     +D   L   ++      +     H   L D++    E
Sbjct: 196 KERLVKNPLRILDTKNQALQEVLNDAPKLLDYLDDD----SREHFAHLCHLLDAMGIAYE 251

Query: 274 NKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRV 324
                 RG++     +F       G++ ++     + G       H  Q   + +G  R+
Sbjct: 252 VNPKLVRGLDYYNKTVFEWVTSALGSQGTVCGGGRYDGLVEQLGGHATQGVGFAMGLERL 311

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           V  V E + +       D    +      +           E+I + L ++G        
Sbjct: 312 VLLVQEVNKEINLPKAVDVYVVYSGEGATLN-----AFQMAERIRSELPQLGVMTHC--S 364

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
           G     QF  AD +   + +++G   V    V +K   +G  +  ++  ++I   + RF
Sbjct: 365 GGNFKKQFKRADKVEAQIALVIGESEVEQQTVVLKDLQSGAEQVIIAQADLIAELTKRF 423


>gi|197119467|ref|YP_002139894.1| histidyl-tRNA synthetase [Geobacter bemidjiensis Bem]
 gi|197088827|gb|ACH40098.1| histidyl-tRNA synthetase [Geobacter bemidjiensis Bem]
          Length = 416

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/390 (13%), Positives = 115/390 (29%), Gaps = 11/390 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              + A  R      G  E+ +P L+  +L+  S     D   KEM    D+ +  +   
Sbjct: 20  WQYIEATARRVFELYGLSEIRIPILEKTELFCRSIGDATDIVEKEMYSFVDKGENKVTMR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  H     +     Y +   FR E   +    R R+F    A    +  
Sbjct: 80  PEGTASVMRAYVEHKMHALDPVARLYYMGPMFRYERPQKG---RYRQFHQIGAEITGVAA 136

Query: 168 EGSKHSYNKMFVSY---LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
                    M   +   L +       +        P+  D   +F++       +  C 
Sbjct: 137 PSVDAQVLTMLTHFFNELGLTEPSLQINSLGCPCCRPLYRDALKKFLLDRIDSLCED-CK 195

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGI 282
           + +   P+ + +                          H ++    L   +      + +
Sbjct: 196 RRYESNPLRALDCKSAGCQEATQGAPSMLDYLCGECSAHFDQTRKYLELADTPYAINKRM 255

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
             G  +Y  T + +  +     +         G         +  +  +    +  +   
Sbjct: 256 VRGLDYYTRTTFEMVTTLLGAQSAVAAGGRYDGLIAEIGGPQIPGIGFAMGVERVALLLA 315

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
                +   + I A  +       ++ + L + G  V  D  G+ + SQ   AD      
Sbjct: 316 EKEFSRRPDLFIAAMGEEAHAEAFRLMSALQRGGAAVEIDYEGKSLKSQMRRADKFNSRF 375

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +I+G   +S     +K+   G + ++ L+
Sbjct: 376 TLIIGGDELSRGTAPLKNMDGGTQSEVPLD 405


>gi|332305585|ref|YP_004433436.1| histidyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172914|gb|AEE22168.1| histidyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 426

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 122/438 (27%), Gaps = 64/438 (14%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP            IRE     G  E+  P ++S DL+  S G   D   KEM   ADRN
Sbjct: 15  LPEQSGLWQWAEKAIREVVASYGYQEVRTPIVESTDLFKRSIGEVTDIVEKEMYTFADRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF----- 155
           D ++   P     +      H   Y       + +   FR E   +    +  +F     
Sbjct: 75  DDSLTLRPEGTASVVRAGNEHGLLYNQ-QQRLWYMGPMFRHERPQKGRYRQFHQFGVEVF 133

Query: 156 -------------------------LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                                             L    ++ +Y +  V YL        
Sbjct: 134 GLAGPDIDAEVIALSARLWKKFGISEQVTLELNSLGSNQARETYRQALVEYLLERKEHLD 193

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADT--GETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           +    R +S P+    S    V A      + +            +     D +     +
Sbjct: 194 EDSLRRLQSNPLRVLDSKNPQVQAAITDAPSLIDYLDAESKEHFQALCERLDALGIQYRV 253

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +        +    E + DSL     V A G   G +   G K +             
Sbjct: 254 NPRLVRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVEQLGGKTT------------- 300

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
               Q   + IG  R+V  +  +                    + + A          KI
Sbjct: 301 ----QGVGFAIGLERLVLMLQAN---------GAEEFVPSPVDVYVTAMGDEVELYALKI 347

Query: 369 YARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGI 425
              L  V     V     G     Q   AD     + +++G     +++V IK  R    
Sbjct: 348 AESLRDVMPSLRVQTHFGGGNFKKQMKRADKSAARVALVLGESEQQEAQVSIKFLREDKP 407

Query: 426 REDMSLEEVINYASHRFS 443
           +  ++  E+ +  S  FS
Sbjct: 408 QIRVARSELESTLSTLFS 425


>gi|168187502|ref|ZP_02622137.1| histidyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
 gi|169294553|gb|EDS76686.1| histidyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
          Length = 416

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/403 (13%), Positives = 113/403 (28%), Gaps = 18/403 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   +++        E+  P  +  +L+        D   KEM    D+ D+++   
Sbjct: 20  WHYIEDKLKKLAEEYALKEIRTPIFEHTELFERGVGETTDVVQKEMYTFKDKGDRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F  +      LP   +     FR E   +  +    +F ++   S + + 
Sbjct: 80  PEGTAPAARAFIENGLFNEALPIKMFYFTPVFRYENVQKGRLREHHQFGVEVFGSPEASV 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +               I       +     E      D   E+   A   E    C   F
Sbjct: 140 DAELIGLAMRAFKEFGIDSLELNINNIGCPECRKKYNDALREYF-RASYDELCDTCKARF 198

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSARG 281
              P+   +        +                 H E L   L       +      RG
Sbjct: 199 ERNPMRLLDCKNKRCKEIGKDAPIILDYVCDDCKNHFENLKTYLGSLNIEYKVNPYIVRG 258

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           ++      F    +          +G  +      +  +G    +  +I +  +    I 
Sbjct: 259 LDYYTKTVFEIINNDITVCGGGRYNGLIEQIGGKPTPAVGFGMGIERLILTLMENNIEIP 318

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
                   I  +  K   +       K+   L   G     D M + + +Q   A+ +  
Sbjct: 319 KPKEMDIFIGSMGDKGKIE-----AFKLANVLRSKGLKAECDHMNKSVKAQMKYANKIES 373

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMS---LEEVINYASH 440
              +I+G   + + K  +K    G + ++S   L+E+ +    
Sbjct: 374 LYSMIIGDTEIEEGKANLKRMEDGQQFEVSLNNLDEIASMILK 416


>gi|119614366|gb|EAW93960.1| glycyl-tRNA synthetase, isoform CRA_a [Homo sapiens]
          Length = 739

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 84/312 (26%), Gaps = 24/312 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 404 TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 463

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 464 RSCYDLSCHARATKVPLVAEKPLKEPISFNVVQFEPSKGAIGKAYKKDAKLVMEYLAICD 523

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 524 ECYITEMEMLLNEKGEFTIETE-GKTFQLTKDMINVKRFQ-KTLYVEEVVPNVIEPSFGL 581

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 582 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRH 641

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 642 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISE 701

Query: 434 VINYASHRFSNN 445
           + +      + N
Sbjct: 702 LPSIVQDLANGN 713



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 145 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 204

Query: 96  LADRNDK 102
                + 
Sbjct: 205 DVKNGEC 211


>gi|116805340|ref|NP_002038.2| glycyl-tRNA synthetase [Homo sapiens]
 gi|313104283|sp|P41250|SYG_HUMAN RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Diadenosine
           tetraphosphate synthetase; Short=AP-4-A synthetase;
           AltName: Full=Glycine--tRNA ligase; Short=GlyRS
          Length = 739

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 84/312 (26%), Gaps = 24/312 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 404 TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 463

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 464 RSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICD 523

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 524 ECYITEMEMLLNEKGEFTIETE-GKTFQLTKDMINVKRFQ-KTLYVEEVVPNVIEPSFGL 581

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 582 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRH 641

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 642 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISE 701

Query: 434 VINYASHRFSNN 445
           + +      + N
Sbjct: 702 LPSIVQDLANGN 713



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 145 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 204

Query: 96  LADRNDK 102
                + 
Sbjct: 205 DVKNGEC 211


>gi|1311463|dbj|BAA06338.1| glycyl tRNA synthetase [Homo sapiens]
 gi|14043463|gb|AAH07722.1| Glycyl-tRNA synthetase [Homo sapiens]
 gi|14043544|gb|AAH07755.1| Glycyl-tRNA synthetase [Homo sapiens]
 gi|119614367|gb|EAW93961.1| glycyl-tRNA synthetase, isoform CRA_b [Homo sapiens]
 gi|123984895|gb|ABM83699.1| glycyl-tRNA synthetase [synthetic construct]
 gi|123998729|gb|ABM87020.1| glycyl-tRNA synthetase [synthetic construct]
 gi|261860000|dbj|BAI46522.1| glycyl-tRNA synthetase [synthetic construct]
          Length = 739

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 84/312 (26%), Gaps = 24/312 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 404 TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 463

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 464 RSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICD 523

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 524 ECYITEMEMLLNEKGEFTIETE-GKTFQLTKDMINVKRFQ-KTLYVEEVVPNVIEPSFGL 581

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 582 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRH 641

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 642 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISE 701

Query: 434 VINYASHRFSNN 445
           + +      + N
Sbjct: 702 LPSIVQDLANGN 713



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 145 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 204

Query: 96  LADRNDK 102
                + 
Sbjct: 205 DVKNGEC 211


>gi|126662590|ref|ZP_01733589.1| glycyl-tRNA synthetase [Flavobacteria bacterium BAL38]
 gi|126625969|gb|EAZ96658.1| glycyl-tRNA synthetase [Flavobacteria bacterium BAL38]
          Length = 513

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 80/253 (31%), Gaps = 16/253 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       GE   +            ++             E+  A YA  
Sbjct: 260 FRMREFEQMEMQFFVKPGEEMKWYEYWKTTRLAWHQSLGLGKENYRFHDHEKL-AHYANA 318

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +            E + + +R            ++S      F      ++   +    +
Sbjct: 319 AADIEFNFPFGFKELEGIHSRTDFDLKAHE---QFSGKKLQYFDNDTNSNYTPYVVETSV 375

Query: 320 GAMRVVAA---------VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R+  A          +E       +  P  +AP K +++ +   D    +  + I  
Sbjct: 376 GLDRMFLAVFSKSLQEETLEDGSTRTVLRLPSVLAPTKAAVLPLVKKD-GLPEVAQSIIN 434

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L     +V +D+    +G ++   D LG P  + V  + + D  V I+HR +  ++ + 
Sbjct: 435 ELK-WDFNVAYDEKDA-VGRRYRRQDALGTPFCITVDHQTLEDETVTIRHRDSMQQDRVK 492

Query: 431 LEEVINYASHRFS 443
           +  + +  ++  S
Sbjct: 493 ISALRDIINNEVS 505


>gi|322503754|emb|CBZ38840.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 628

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 12/152 (7%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK----------A 356
           G  +   +     G  R++  ++E S+  +      +      S   +            
Sbjct: 461 GYSYTPSVIEPSFGIGRILYCLLEQSYWVRRDDGGKNDKRAVFSFSPLLAPQKVALLPLM 520

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     +I   L   G  V  DD    IG ++A  D LG P  +    +   D  V
Sbjct: 521 VKPELLATISEIRQELVMRGISVRVDDSSVTIGKKYARVDELGIPFAITCDFEG--DGSV 578

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            ++ R T  +  +   EV +      +  +P+
Sbjct: 579 TLRERDTASQVRVPKSEVASIVVELCNPLQPL 610



 Score = 44.0 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 1/76 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y   P       N+    R+         E+    L   +++  SG    +   M+R
Sbjct: 40  AGLYDLGPTMCAMKSNMLHFWRQHFVIEESMCEVDTTCLTPEEVFKASGHVTRFNDVMVR 99

Query: 96  LADRNDKAMIYGPTHE 111
                +         E
Sbjct: 100 DTVTGECIRADKFLEE 115


>gi|258597698|ref|XP_001348371.2| glycine-tRNA ligase, putative [Plasmodium falciparum 3D7]
 gi|255528796|gb|AAN36810.2| glycine-tRNA ligase, putative [Plasmodium falciparum 3D7]
          Length = 889

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 56/147 (38%), Gaps = 9/147 (6%)

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF---KISLINIK------AHDQ 359
           +    +     G  R++  ++E S   +          +      L  IK      ++++
Sbjct: 724 NFIPNVIEPSFGIGRLIFCILEHSFRIRRFTDDKEERQYLSLPYKLAPIKCSILSISNNK 783

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 ++I   L++       D+    IG ++A  D +G P  V +  + + D  + ++
Sbjct: 784 AFYPYIKQIQMLLNQYNISSKIDNSSVSIGKKYARTDEIGIPFAVTIDFQTLKDKTITLR 843

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
            R + ++  +S+  +++  +      +
Sbjct: 844 ERDSMLQIRISMSHLVDIINSMLHAKK 870



 Score = 42.8 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 8/110 (7%)

Query: 1   MRRSKYFLPILQENP-RDAEIASHKLMLRTGM------IHQHSKGIYSWLPLGQKALDNV 53
           M+    +    +E    +       L+ R         I+  + G++ + P G      +
Sbjct: 145 MKLKDLYGKPSEELKLVENRTKLENLVKRKFFYTNSFEIYGGASGLFDYGPSGCLLKSEL 204

Query: 54  NAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
             + R         +E+S   +    +   SG  D +   M+R    ND 
Sbjct: 205 ENLWRCHFIYYDEMLEISGSCVTPYQVLKTSGHVDRFTDLMIRDVVTNDC 254


>gi|197099206|ref|NP_001127342.1| glycyl-tRNA synthetase [Pongo abelii]
 gi|71153559|sp|Q5RBL1|SYG_PONAB RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Diadenosine
           tetraphosphate synthetase; Short=AP-4-A synthetase;
           AltName: Full=Glycine--tRNA ligase; Short=GlyRS
 gi|55728200|emb|CAH90849.1| hypothetical protein [Pongo abelii]
          Length = 739

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 84/312 (26%), Gaps = 24/312 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 404 TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 463

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 464 RSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPNKGAIGKAYKKDAKLVMEYLAICD 523

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 524 ECYITEMEMLLNEKGEFTIETE-GKTFQLTKDMVNVKRFQ-KTLYVEEVVPNVIEPSFGL 581

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 582 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRH 641

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 642 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEVSE 701

Query: 434 VINYASHRFSNN 445
           + +      + N
Sbjct: 702 LPSIVRDLANGN 713



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 145 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 204

Query: 96  LADRNDK 102
                + 
Sbjct: 205 DVKNGEC 211


>gi|320590421|gb|EFX02864.1| glycyl-tRNA synthetase [Grosmannia clavigera kw1407]
          Length = 665

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/314 (10%), Positives = 98/314 (31%), Gaps = 26/314 (8%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
              +   +     +   +   V + +              ++         E +  AD  
Sbjct: 331 LGYFIARIHLFLKRIGVDMSKVRFRQHMANEMAHYATDCWDAELQTSSGWVECVGCADRS 390

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------ 271
              +         P+          +     +E     +        + +  +L      
Sbjct: 391 AYDLTVHAKKTGAPLVVRQRLETPKVVEEWTLEIDKKKFGPRFKKDAKAVETALLALSQE 450

Query: 272 ------PENKRVSARGIEVGHIFYFGTKYSLPMSA---TFKGADGKDHYVQMGSYGIGAM 322
                  E K  ++  ++V  +     + +  +     T +  + ++    +     G  
Sbjct: 451 QLETLAKEQKEKASISVDVASVDGGKVELANELVTIAWTKRTENVREFTPNVIEPSFGIG 510

Query: 323 RVVAAVIESSHDGK----------GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           R++ +++E ++  +           I +  +VAP K+ ++ I + D+  +     +  +L
Sbjct: 511 RILYSLLEHNYWSRGAEGGDEARGVISFSPAVAPTKVLIVPISSKDE-FKPVVRDLSQKL 569

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             +G     DD    IG +++  D LG P  + +  + + D  V ++ R +  +      
Sbjct: 570 RSLGLASRVDDSTASIGKRYSRNDELGTPFGITIDFQTIKDGSVTLRERDSTRQVRADEA 629

Query: 433 EVINYASHRFSNNR 446
            ++         ++
Sbjct: 630 TILAAVQSLVRGDK 643



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 7/110 (6%)

Query: 10  ILQENPRDAEIASHKLMLRTGM-----IHQHSKGIYSWLPLGQKALDNVNAIIREEQN-R 63
            L+  P D +     L  R        I+    G+Y + P G     N+    R+     
Sbjct: 7   TLKGQPLDKQSLDSLLRRRLFYTPSFEIYGGVSGLYDYGPPGCALQANIVDTWRKHFILE 66

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
              +E+    L   ++   SG  D +   M +   ++ +        EE+
Sbjct: 67  EDMLEVDCTVLTPHEVLKTSGHVDKFADWMCKD-PKSGEIFRADHFVEEI 115


>gi|146103730|ref|XP_001469631.1| glycyl-tRNA synthetase  [Leishmania infantum JPCM5]
 gi|134074001|emb|CAM72741.1| putative glycyl tRNA synthetase [Leishmania infantum JPCM5]
          Length = 628

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 12/152 (7%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK----------A 356
           G  +   +     G  R++  ++E S+  +      +      S   +            
Sbjct: 461 GYSYTPSVIEPSFGIGRILYCLLEQSYWVRRDDGGKNDKRAVFSFSPLLAPQKVALLPLM 520

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     +I   L   G  V  DD    IG ++A  D LG P  +    +   D  V
Sbjct: 521 VKPELLATISEIRQELVMRGISVRVDDSSVTIGKKYARVDELGIPFAITCDFEG--DGSV 578

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            ++ R T  +  +   EV +      +  +P+
Sbjct: 579 TLRERDTASQVRVPKSEVASIVVELCNPLQPL 610



 Score = 44.0 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 1/76 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y   P       N+    R+         E+    L   +++  SG    +   M+R
Sbjct: 40  AGLYDLGPTMCAMKSNMLHFWRQHFVIEESMCEVDTTCLTPEEVFKASGHVTRFNDVMVR 99

Query: 96  LADRNDKAMIYGPTHE 111
                +         E
Sbjct: 100 DTVTGECIRADKFLEE 115


>gi|302409932|ref|XP_003002800.1| threonyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
 gi|261358833|gb|EEY21261.1| threonyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
          Length = 104

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 29/81 (35%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           S G   +LP G +  + +   +R +    G  E+  P +    LW  SG   +Y  +M  
Sbjct: 6   SPGSPIFLPNGARIFNRLVDFLRRQYVSYGFEEVITPNIYKKSLWEVSGHLQNYADDMYT 65

Query: 96  LADRNDKAMIYGPTHEEVMTD 116
           +  R  +        E     
Sbjct: 66  VTSRARQPEATSSQPEASSCC 86


>gi|194380518|dbj|BAG58412.1| unnamed protein product [Homo sapiens]
          Length = 729

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 84/312 (26%), Gaps = 24/312 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 394 TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 453

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 454 RSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICD 513

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 514 ECYITEMEMLLNEKGEFTIETE-GKTFQLTKDMINVKRFQ-KTLYVEEVVPNVIEPSFGL 571

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 572 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRH 631

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 632 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISE 691

Query: 434 VINYASHRFSNN 445
           + +      + N
Sbjct: 692 LPSIVQDLANGN 703



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 135 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 194

Query: 96  LADRNDK 102
                + 
Sbjct: 195 DVKNGEC 201


>gi|297588365|ref|ZP_06947008.1| histidine--tRNA ligase [Finegoldia magna ATCC 53516]
 gi|297573738|gb|EFH92459.1| histidine--tRNA ligase [Finegoldia magna ATCC 53516]
          Length = 431

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/441 (13%), Positives = 128/441 (29%), Gaps = 42/441 (9%)

Query: 31  MIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI   +  G+   LP  Q   D +   I +   +     +  P ++  D+ +  G  ++ 
Sbjct: 1   MIQPSTLPGMMELLPEDQMVFDTIKRRIEDVFIKNAFFSIDTPAIEKLDVLLSKGGGETS 60

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            +     + + ++ + +  T                   PF  YQI   +R E   +   
Sbjct: 61  KQVYRIDSSKKNQGLRFDLTVPLAKYVSMYMQDL---AFPFRRYQIAKVYRGERNQKG-- 115

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL----RIFHRLGLKSIPMRAESGPIGGD 205
            R +EF   D            +    +   Y             +    +  +G     
Sbjct: 116 -RYKEFYQCDIDIIGNEKLSLYNDAEIVKCMYEALKSIDVPDFEFQFNNRKLLNGYFSDL 174

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE-----QWTAPYAATS 260
              +F       +       D +   +   N D + I S+ S ++     Q       + 
Sbjct: 175 GIEDFESCLRIIDKLDKIGIDNVKEELSKINLDDEKIDSILSFLQIDGPNQEIIEKLESL 234

Query: 261 DVHNEKLFDSLPENK-------------------RVSARGIEVGHIFYFGTKYSLPMSAT 301
           ++ NE     L E K                       RG++      F T +       
Sbjct: 235 NIDNELFVCGLEELKFVYDDILSLGVSPDNIKINLSITRGLDYYTGSVFETFFKEYREIG 294

Query: 302 FKGADGKDHYVQMGSY---GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
              + G+   +          G    +          +  +       F   +I +K ++
Sbjct: 295 SICSGGRYDSLANNFTKSKLPGVGMSIGLTRLFYQLQELNLVKGQQTNFDCIIIPMKGYE 354

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       K+   L             +++  +F  AD L     +I+G   V  +K  +
Sbjct: 355 KN----AVKLMNDLRSSSVRCMSYLEDDKLKKKFNYADKLSVKYVIIIGQDEVEQNKFTL 410

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           ++   G +E + L ++I    
Sbjct: 411 RNMENGNQELLELNQIIEKLK 431


>gi|332242726|ref|XP_003270534.1| PREDICTED: glycyl-tRNA synthetase-like [Nomascus leucogenys]
          Length = 739

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 84/312 (26%), Gaps = 24/312 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 404 TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 463

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 464 RSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPNKGAIGKAYKKDAKLVMEYLAICD 523

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 524 ECYITEMEMLLNEKGEFTIETE-GKTFQLTKDMVNVKRFQ-KTLYVEEVVPNVIEPSFGL 581

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 582 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRH 641

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 642 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEVSE 701

Query: 434 VINYASHRFSNN 445
           + +      + N
Sbjct: 702 LPSIVRDLANGN 713



 Score = 49.7 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 145 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 204

Query: 96  LADRNDK 102
                + 
Sbjct: 205 DVKNGEC 211


>gi|319775764|ref|YP_004138252.1| histidyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|317450355|emb|CBY86571.1| histidyl-tRNA synthetase [Haemophilus influenzae F3047]
          Length = 423

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 67/412 (16%), Positives = 129/412 (31%), Gaps = 27/412 (6%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               + A +R   N  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEAQVRNVLNSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y     FR E   +    +  +  ++     +  
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWYI-GPMFRHERPQKGRYRQFHQVGVEVFGIANPE 138

Query: 167 PEGSKHSYNKMFVSYLRIFHR-------LGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +             L I          +G         S  +G   +H+ ++  +  E 
Sbjct: 139 IDAELIMLTYRLWKALGIDQHVTLQLNSIGSLEARANYRSALVGFLENHQDLMSDEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVS 278
            V      +D   P      D+   L   ++  + A +     + +          K V 
Sbjct: 199 LVRNPLRILDTKNPELQKVLDNAPKLLDYLDDESRAHFEQLCSLLDAVGIQYEINPKLVR 258

Query: 279 ARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   +F       G + ++     + G       H      + +G  R+V  V E 
Sbjct: 259 GLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAMGLERLVLLVQEV 318

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           + +       D    ++     +        +  EK+ + L     +      G     Q
Sbjct: 319 NPNVPAKSAVDIYVVYQGEGATL-----AAFELAEKVRSELP--HLNTMLHCSGGNFKKQ 371

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
           F  AD     L +++G   V + +V +KH   G  ++ + L  +I+Y   +F
Sbjct: 372 FKRADKSSATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVNIIDYLQTQF 423


>gi|54025634|ref|YP_119876.1| histidyl-tRNA synthetase [Nocardia farcinica IFM 10152]
 gi|81679911|sp|Q5YTH9|SYH_NOCFA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|54017142|dbj|BAD58512.1| putative histidyl-tRNA synthetase [Nocardia farcinica IFM 10152]
          Length = 422

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/415 (14%), Positives = 119/415 (28%), Gaps = 15/415 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+  ++P G      V   +       G   + +P  +   L+        D   KEM  
Sbjct: 12  GVPDYVPPGSAEFVAVRDALLRAARLAGYGHIELPIFEDTGLFARGVGESTDVVTKEMYT 71

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR ++++   P     +      H      LP         FR E RP+ G  R  + 
Sbjct: 72  FADRGERSVTLRPEGTAGVMRAVIEHGLDRGQLPVKLVYSGPFFRYE-RPQAGRYRQLQ- 129

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
            +         P             +  +        +    +    P   +L  EF+  
Sbjct: 130 QVGVEAIGVDDPALDAEVIAIADAGFRSLGLDGFRLELTSLGDDTCRPRYRELLQEFLFG 189

Query: 214 ADTGETQVFCSK----DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
               E     ++      +D   P       D   +   + +    +      H + L  
Sbjct: 190 LPLDEETRRRAELNPLRVLDDKRPEVRELLADAPLMIDHLSESAKAHFEQVLGHLDALGV 249

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
               N R+  RG++      F   +    + +  G  G+   +     G     +   + 
Sbjct: 250 PYVVNPRM-VRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQPLSGIGFGLG 308

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                        S        +      +  +     + A+L   G  V     G   G
Sbjct: 309 VDRTMLALQAEGKSAGDPARCDVFGVPLGEAAKQRMVVLAAQLRAAGVRVDLAYGGR--G 366

Query: 390 SQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +     AD  G    +++G + +++  + +K   TG +  + L EV+       
Sbjct: 367 VKGAMKAADRSGARYTLVLGDRDLAEDTIGVKDMSTGDQRQVPLGEVVGVLRSEL 421


>gi|332522579|ref|ZP_08398831.1| histidine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
 gi|332313843|gb|EGJ26828.1| histidine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
          Length = 425

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 64/416 (15%), Positives = 114/416 (27%), Gaps = 19/416 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V A+ RE   +    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 13  LPEEAAKWQYVEAVARETFEKYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           ++ +   P     +   F  +         P   Y I   FR E        R REF   
Sbjct: 73  ERHITLRPEGTAPVVRSFVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 129

Query: 159 DAYSF-DLTPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG  +         I       
Sbjct: 130 GVECFGSANPASDVETIAMANHLFETLGIKDITLHINSLGNPTSRAAYRQALIDYLTPMR 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
             +  D+           +D     +    ++  S+   ++  +  +  T       L  
Sbjct: 190 EQLSKDSQRRLDENPLRVLDSKEKEDKIAVENAPSILDYLDDESQAHFETVKAMLADLEI 249

Query: 270 S-LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             + +   V         IF F    ++  S     A G+   +     G         +
Sbjct: 250 PYVIDTNMVRGLDYYNHTIFEF--MATVDNSELTICAGGRYDGLVSYFNGPETPGFGFGL 307

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                         ++       + +             +   L + G  V  D +G +I
Sbjct: 308 GLERLLLILEKQGITLPVVPGMDVYVAVLGDRANSKALALVQSLRRQGFKVERDYLGRKI 367

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +QF  AD     + + +G   V   KV +K+  +    + S EE+ N      S 
Sbjct: 368 KAQFKSADSFKAKVIMTLGESEVEAGKVTLKNNQSRQEIEASFEEISNDFPRLLSK 423


>gi|260583248|ref|ZP_05851025.1| histidyl-tRNA synthetase [Haemophilus influenzae NT127]
 gi|260093701|gb|EEW77612.1| histidyl-tRNA synthetase [Haemophilus influenzae NT127]
          Length = 418

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 65/395 (16%), Positives = 116/395 (29%), Gaps = 12/395 (3%)

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHE 111
             II +   + G  ++  P +++ +L++ S     D   KEM    D  +K  +      
Sbjct: 26  ERIIIDWMKKYGYEQIRTPIIENTNLFIRSIGESTDIVEKEMYSFVDSLNKDKLTLRPEG 85

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLTP 167
            V             N     + +   FR E       R       E L  +    D   
Sbjct: 86  TVACLRACLENNLLYNSTQRLWYMGPMFRHEKPQKGRYRQFTQVGIEALGLEGPDIDAEM 145

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                                 L ++  RA+   I      + I + D    +   S   
Sbjct: 146 ITMTKDLWNQLGFKNIELQVNTLGTVAERAKYRNILIKYLEDNIDVLDEDGRRRLYSNPL 205

Query: 228 --MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
             +D    S     ++   L   + + +  +  T     EKL  S  EN R+        
Sbjct: 206 RVLDSKNKSMQDICNNAPKLIEYLGKDSLCHYYTWLNFLEKLGISYVENTRLVRGLDYYN 265

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           +  +    Y+     TF      +  ++       A    A  +E   D           
Sbjct: 266 NSVFEWVSYANESPLTFCAGGRYNGLMEELGGESKAGIGFAMGVERVLDMLDTKVIPENN 325

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
                +      D+        I  +L  +G +V  D     I SQ   AD       +I
Sbjct: 326 NLIYIVHFGNNTDE----YGLLIAQKLRNIGFNVKQDFEHTSIKSQLKRADKYNARFSII 381

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +G   V  +KV++K   +     + L  +I++   
Sbjct: 382 IGENEVYLNKVKVKEMKSRNEVLIDLNNLIDFFIK 416


>gi|147902079|ref|NP_001091035.1| glycyl-tRNA synthetase [Bos taurus]
 gi|146186496|gb|AAI40483.1| GARS protein [Bos taurus]
 gi|296488438|gb|DAA30551.1| glycyl-tRNA synthetase [Bos taurus]
          Length = 739

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 75/283 (26%), Gaps = 24/283 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 429 FRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKE 488

Query: 241 --------------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                          I        +    Y A  D       + L   K       E G 
Sbjct: 489 PKTVNVVQFEPNKGAIGKAYKKDAKLVMEYLAICDECYITEMEKLLNEKGEFTVETE-GK 547

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            F              K    ++    +     G  R++  V E +   +      +   
Sbjct: 548 TFQLTKDMVNVKRFQ-KTLHVEEVIPSVIEPSFGLGRIMYTVFEHTFQVREGDEQRTFFS 606

Query: 347 FKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           F   +   K      + +Q      +++   L++ G     DD    IG ++A  D +G 
Sbjct: 607 FPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGISHKVDDSSGSIGRRYARTDEIGV 666

Query: 401 PLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHR 441
              + +    V+       ++ R +  +    + E+ +     
Sbjct: 667 AFGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPSVVRDL 709



 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 145 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 204

Query: 96  LADRNDK 102
                + 
Sbjct: 205 DLKNGEC 211


>gi|254252258|ref|ZP_04945576.1| Histidyl-tRNA synthetase [Burkholderia dolosa AUO158]
 gi|124894867|gb|EAY68747.1| Histidyl-tRNA synthetase [Burkholderia dolosa AUO158]
          Length = 446

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/431 (13%), Positives = 106/431 (24%), Gaps = 39/431 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAALWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FTDALNGEHLTMRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRLERPHRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 TGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-------- 265
                +     +     P+   +T    +  +     +        S  H E        
Sbjct: 193 QHVDVLDEDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGDQSRAHFEGLQRLLLA 252

Query: 266 -----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                K+   L          +        G + ++     +     +       + G  
Sbjct: 253 NNVPFKINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWA 312

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                   +    D         V              +  R+       RL   G DV 
Sbjct: 313 MGIERILELLKEEDLAPEQEGVDVYVVHQG--------EAAREQAFIAAERLRDTGLDVI 364

Query: 381 W----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGI------REDM 429
           +    D       SQ   AD  G    VI G + V++    +K  R TG       ++ +
Sbjct: 365 FHCSADGAPASFKSQMKRADASGAAFAVIFGEEEVANGTAGVKALRGTGDEGEKNVQQTV 424

Query: 430 SLEEVINYASH 440
            +E +  +  +
Sbjct: 425 PVESLTEFLIN 435


>gi|259502226|ref|ZP_05745128.1| histidine-tRNA ligase [Lactobacillus antri DSM 16041]
 gi|259169844|gb|EEW54339.1| histidine-tRNA ligase [Lactobacillus antri DSM 16041]
          Length = 425

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/414 (14%), Positives = 119/414 (28%), Gaps = 18/414 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G    LP      + V A  RE   + G   +  P  +   ++        D   KEM  
Sbjct: 8   GTADLLPGTTGLWEKVEANAREVFRQFGYRGIRTPMFEDYRVFARNVGDTSDIVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   +  +         P+  Y +   FR E        R R
Sbjct: 68  FHDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYKVYYMGPMFRYERPQSG---RQR 124

Query: 154 EFLMKDAY-SFDLTPEGSKHSYNKMFV--------SYLRIFHRLGLKSIPMRAESGPIGG 204
           EF         + +P+                   +   + + LG K +        I  
Sbjct: 125 EFHQIGVEALNNESPQIDVEVIAMAMALFRKFGVPNVKLVINTLGDKQVRQDYREALINY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
              H   + AD+ E         +D     +     D  S+   ++  +  Y        
Sbjct: 185 LKPHYDELSADSQERLYKNPLRVLDSKDAGDQKLVADAPSILDYLDDESQAYFDQVQALL 244

Query: 265 EKL-FDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           ++L  D   +   V         IF             T   A G+ + +     G    
Sbjct: 245 KELGIDYEIDTNMVRGLDYYNHTIFEIMSDSPVFGGGYTTVCAGGRYNGLISQLGGPEEG 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            +   +                AP     + + + D    +   ++  ++ + G     D
Sbjct: 305 GIGFGMGVERLMLLLEQENPDFAPQDQLDLFLASADDQGDNLAFELLNKVRQHGIVADKD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             G ++G Q   A         + G + VS  + ++K+  T    ++ + +   
Sbjct: 365 YSGVKVGKQIKEAFRRNAKYFAVFGDREVSAGQFQLKNAATKDAVEVKVADFAA 418


>gi|194333206|ref|YP_002015066.1| histidyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
 gi|229558703|sp|B4S4H1|SYH_PROA2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|194311024|gb|ACF45419.1| histidyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
          Length = 422

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/408 (14%), Positives = 114/408 (27%), Gaps = 28/408 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLA-DRNDKAMIY 106
              V ++I    +     E+  P  +  DL+  S     D  GKEM     D N +++  
Sbjct: 21  WQYVESVIHRVASFYAFHEIRTPVFEYTDLFQRSIGATTDIVGKEMFTFQPDPNGRSITL 80

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +   F    ++  +     Y I   FR E        +  +F  +   +    
Sbjct: 81  RPEMTAGVMRAFLQGNRASESPVHKLYYISNLFRKERPQAGRQRQFCQFGAELLGASSPA 140

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                 +        L +       +     E      D   E+++   +GE      + 
Sbjct: 141 AVAEVIAMMMHVFRLLGLKGLKLRINTLGSIEDRKRYRDALREYLLPF-SGELDAASLER 199

Query: 227 FMDFPIPSENTDFDDIISL------------NSIVEQWTAPYAATSDVHNEKLFDSL-PE 273
               P+   ++    + S+             + VE++        D   E + D L   
Sbjct: 200 LEKNPLRILDSKNPAVQSIVSGAPSLRDYLQPAAVEEFEEVLGYLDDRGIEYVQDPLLVR 259

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIE 330
                            G + +L     + G     G    +    + +G  R++ A+  
Sbjct: 260 GLDYYCHTAFEVQCSDLGAQDALGGGGRYDGLARELGAGADLPAVGFAVGMERLMIALER 319

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                        V         +             +   L         D  G  + +
Sbjct: 320 QGLLSTIPPKGPDVYVVLQDRAFLVH--------AVALCGALRDAAISTEIDLAGRSMKA 371

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           Q   A+ +     + VG   V+     +K+  +  +E  SLE VI   
Sbjct: 372 QMREANRIKAAYALFVGPDEVASGVYGLKNLESSSQESRSLEAVIAEL 419


>gi|325479652|gb|EGC82744.1| histidine--tRNA ligase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 428

 Score = 84.8 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 56/425 (13%), Positives = 110/425 (25%), Gaps = 33/425 (7%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G+   LP  Q   DN+  II +   +   + +  P ++  ++    G  ++  +     
Sbjct: 10  AGVMELLPKEQLVFDNIKEIIEDTYKKYQFMPIDTPVIEKNEILFAKGGGETEKQIYEIA 69

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           +D  D ++ +  T              +    PF  Y I   +R E   +    R REF 
Sbjct: 70  SDSKDMSLRFDLTVPLARYVSEHFQDLN---FPFKRYHIGKVYRGERNQKG---RYREFY 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG------------ 204
             D            +      V Y         +          + G            
Sbjct: 124 QCDIDIIGHNSLSIYNDALLPRVIYEIFTKLDFPEITFKINNRKLLNGFFRSLGIEDSTD 183

Query: 205 --------------DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                         +   E   L D    +                    D       +E
Sbjct: 184 VLRTIDKKDKIGIENTFEELSKLTDEKTAKTIVDFIENSDSNSELLYKLFDFSDDELFLE 243

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                      + +  + D   +      RG++      + T  +         + G+  
Sbjct: 244 GVDELNKVYRYMIDLGIPDDNIKIDLAITRGLDYYTSTVYETFINGYEKIGSVCSGGRYE 303

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN-IKAHDQVCRDACEKIY 369
            +           V  ++  +    +           K      I   D+   +   +I 
Sbjct: 304 NLASNFSKQKLPGVGMSIGLTRLFYQLQELGLIDEKIKSLTDILIIPMDESINEYAIEIL 363

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L   G  V       +   +   AD  G    +I+G + +S  +  IK   TG +   
Sbjct: 364 NKLRDNGESVDIYLESGKFKKKMNYADKCGIRRVIILGEEEMSKREYSIKDMETGEQISK 423

Query: 430 SLEEV 434
              E+
Sbjct: 424 KFGEL 428


>gi|74226707|dbj|BAE27003.1| unnamed protein product [Mus musculus]
          Length = 729

 Score = 84.8 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/286 (10%), Positives = 76/286 (26%), Gaps = 22/286 (7%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 419 FRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKE 478

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE-------------VGHI 287
                    E              + + + L          +E              G  
Sbjct: 479 PKTVNVVQFEPNKGAVGKAYKKDAKLVLEYLSACDECYISEMELLLSEKGEFTIETEGKT 538

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F              K    ++    +     G  R++  ++E + + +      +    
Sbjct: 539 FQLTKDMVSVKRFQ-KTLHVEEVVPSVIEPSFGLGRIMYTILEHTFNVREGDEQRTFFSL 597

Query: 348 KISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
              +   K      + +Q      +++   L++ G     DD    IG ++A  D +G  
Sbjct: 598 PAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGVA 657

Query: 402 LQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + +    V+       ++ R +  +    + E+ N      + N
Sbjct: 658 FGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPNVVRDLANGN 703



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 135 SGLYDFGPVGCALKNNIIQAWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 194

Query: 96  LADRNDK 102
                + 
Sbjct: 195 DVKNGEC 201


>gi|91215382|ref|ZP_01252353.1| glycyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
 gi|91186334|gb|EAS72706.1| glycyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
          Length = 512

 Score = 84.8 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 23/235 (9%)

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             +V  +K      +  EN  F D   +        A YA  +            E + +
Sbjct: 285 HWKVLRTKWHQSLNLGEENYRFHDHEKM--------AHYANAATDIEFNFPFGFKELEGI 336

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA---------V 328
            +R              S      F    G+++   +    IG  R+  A          
Sbjct: 337 HSRTDFDLKAHE---NLSGKKLQFFDPELGENYVPYVIETSIGLDRMFLAVFSSALQEET 393

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           ++       +  P  +AP K ++  +   D    +  +++   L +   +V +D+    +
Sbjct: 394 LKDGSSRTVLKLPSILAPVKAAVFPLLKKD-GLPEIAKELLKEL-QWDFNVVYDEKDA-V 450

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D  G P  + V      D  V I+HR T  ++ + + EV        +
Sbjct: 451 GRRYRRQDAAGTPFCITVDHDTKEDHCVTIRHRDTMEQQRVPMSEVKAIIQKEIN 505



 Score = 37.0 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 12/88 (13%)

Query: 20 IASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM---S 70
          + SH      G I   S        +Y +   G +  +N+ A   +        E+    
Sbjct: 11 VISHAKE--YGYIFSSSEIYDGLSAVYDYGQNGVELKNNIKAYWWKSMVHL-HEEIVGLD 67

Query: 71 VPTLQSADLWVESGRYDSYGKEMLRLAD 98
             L   + W  SG  D++   M+   D
Sbjct: 68 AAILMHPNTWKASGHVDAFNDPMIDNKD 95


>gi|271967380|ref|YP_003341576.1| histidine--tRNA ligase [Streptosporangium roseum DSM 43021]
 gi|270510555|gb|ACZ88833.1| Histidine--tRNA ligase [Streptosporangium roseum DSM 43021]
          Length = 421

 Score = 84.8 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 63/426 (14%), Positives = 118/426 (27%), Gaps = 31/426 (7%)

Query: 38  GIYSWLPL----GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           G + WLP          + + A +R    R G   +  P  +   L+V       D   K
Sbjct: 8   GTFDWLPPRSEQALAVREALTAPVR----RAGYGYIETPVFEDTALFVRGVGESTDIVSK 63

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM    D+  +++   P     +      H      LP   +    +FR E   +    R
Sbjct: 64  EMYTFEDKGGRSLTLRPEGTASVVRSVLQHGLHNGQLPVKLWYSGSQFRYERAQKG---R 120

Query: 152 SREFLMKDAYSFD-LTPEGSKHSYNKMFVSY--LRIFHRLGLKSIPMRAESGPIGGDLSH 208
            R F    A +     P             Y  L +     L +     E  P       
Sbjct: 121 YRHFWQIGAEALGAEDPALDAELIVLAADGYAGLGLTGVRLLLNTLGDKECRPGYRTALQ 180

Query: 209 EFIVLADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
           +F+   D  E      ++   +   D     +       + ++ + E   A +     + 
Sbjct: 181 DFLRALDLDEPTRQRIEINPLRVLDDKRPEVQAQLAGAPLVVDHLCEACKAYHEEVRSLL 240

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                    + + V          F F        SA   G         +G   + ++ 
Sbjct: 241 TAAGVAYTDDPRLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMLGGPALPSVG 300

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               V  +    +      +        +      +  R     +   L + G D     
Sbjct: 301 WALGVDRTLLAMEAEGLAGAETAESRVQVYGVPLGEEARRRMFLLMTELRRAGLDA---- 356

Query: 384 MGEQIGSQ-----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
                G +        AD  G    VI+G + ++    ++K   +G +  + L E++   
Sbjct: 357 -DMSFGGKGVKGAMKGADRSGASYAVILGERDIAAGSAQVKDLASGDQTAVPLAEIVTTL 415

Query: 439 SHRFSN 444
             R   
Sbjct: 416 KERLKK 421


>gi|76803150|ref|YP_331245.1| histidyl-tRNA synthetase [Natronomonas pharaonis DSM 2160]
 gi|121696645|sp|Q3IMP5|SYH_NATPD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|76559015|emb|CAI50613.1| histidine--tRNA ligase [Natronomonas pharaonis DSM 2160]
          Length = 432

 Score = 84.8 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 125/427 (29%), Gaps = 44/427 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P    A   V   I     R G  E+  P L+   L+  +SG  +   +E+   
Sbjct: 7   GFREFYPGEMSARREVTDTIETRARRYGFREVGTPALERTQLYVDKSG--EEIVEELYAF 64

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +  +  +  +     P  ++  +  +R E   +    R REF 
Sbjct: 65  EDKGGREVSLTPELTPTVARMVVAKQQ-ALAKPVKWFSTRPFWRYEQVQQG---RFREFY 120

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-----------------S 199
             +   F      +           L      G       +                  +
Sbjct: 121 QTNIDIFGSERPEADAEVLATAADALTDLGLDGADFEFRVSHRDILGGLLAAMDSDVDTT 180

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL---------NSIVE 250
             I      E I   +     V       +          DD+  L          + VE
Sbjct: 181 DAIRAVDKREKIDDEEYRSLLVGAGLTHEEADTFDSLLRTDDLSELVEFAGTDRVEAAVE 240

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGK 308
              A   A +D    + F S+      +ARG++   G +F           + F G    
Sbjct: 241 NLQAVLDAAADF-GVREFCSV---SLETARGLDYYTGVVFECFDTSGEVSRSVFGGGRYD 296

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGI-IWPDSVAPFKISLINIKAHDQVCRDACEK 367
           D     G     A+ V       S   +   +WP         ++ +       RD    
Sbjct: 297 DLIESFGGQPTPAVGVGIGHETLSLLCQRAGVWPAEELSTDYYVLTVGD----TRDVALD 352

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +   L  +G  V  D      G Q + AD +     V+VG + + D  V +K   +G + 
Sbjct: 353 VARELRALGHVVETDLSDRGFGDQLSYADGINAETVVVVGEQDLEDDAVTLKDMASGDQT 412

Query: 428 DMSLEEV 434
            + L   
Sbjct: 413 QVPLAAF 419


>gi|110667082|ref|YP_656893.1| histidyl-tRNA synthetase [Haloquadratum walsbyi DSM 16790]
 gi|121689465|sp|Q18DQ2|SYH_HALWD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|109624829|emb|CAJ51237.1| histidine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 434

 Score = 84.8 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 61/424 (14%), Positives = 120/424 (28%), Gaps = 36/424 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P    A   V  I+     + G  E+  PTL+   ++  +SG  +   +E+   
Sbjct: 7   GFRDFYPPEMTARRQVIDILETTATQYGFREVGTPTLEQTQMYVDKSG--EGIEEELYAF 64

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           +D   + +   P     +  +     +   + P  +   +  +R E   +    R REF 
Sbjct: 65  SDDGGRDVTLIPELTPTVARMVVDKQQ-ALSKPIKWVSTRPFWRYEQVQQG---RFREFY 120

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +   F      +           LR             +    + G L+      AD 
Sbjct: 121 QTNVDIFGTADPIADAEILAFAADALRNLGLTASDFEFRVSHRDILSGLLASITNDDADI 180

Query: 217 G-ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-----TAPYAATSDVHNEKLFDS 270
                +              +    D        + +     TA     + V N+ +  +
Sbjct: 181 DTRAAIRAVDKRAKIEQAEYHGLLTDAGLSYDQAQSFDDLLTTADLDEIATVGNDIVTTA 240

Query: 271 L------------------PENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDH 310
           +                   +    +ARG++   G +F           + F G    + 
Sbjct: 241 VQNLRSVLAAVDDLGVGEFCDISLTTARGLDYYTGVVFECFDATGEVSRSVFGGGRYDNL 300

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
               G     A+ V    +                        +   D   R    +I  
Sbjct: 301 IESFGGQPTPAVGVAPG-LAPLSLLCQRAGVWPTEELTTDYYILTVGD--TRSVATRIAR 357

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L      V  D      G+Q   AD +     +IVG + + + ++ IK   +G +  + 
Sbjct: 358 ELRVNKNTVEIDIADRSFGAQMGYADSINAETVIIVGERDLENDEITIKDMNSGDQTTVP 417

Query: 431 LEEV 434
           +E  
Sbjct: 418 VEAF 421


>gi|314927725|gb|EFS91556.1| anticodon binding domain protein [Propionibacterium acnes HL044PA1]
          Length = 130

 Score = 84.8 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           + +         + A+L +   +V +DD    IG ++   D +G P  V V      D+ 
Sbjct: 43  SRNSDLSPKARDLAAQLRQWW-NVDFDDAQA-IGKRYRRQDEIGTPFCVTVDFDSPDDNA 100

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V ++ R T  +E +S+++V  Y   + 
Sbjct: 101 VTVRERDTMAQERVSIDKVKEYLGGKL 127


>gi|313837255|gb|EFS74969.1| anticodon binding domain protein [Propionibacterium acnes HL037PA2]
 gi|314972027|gb|EFT16125.1| anticodon binding domain protein [Propionibacterium acnes HL037PA3]
 gi|328907194|gb|EGG26960.1| glycyl-tRNA synthetase [Propionibacterium sp. P08]
          Length = 154

 Score = 84.8 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           + +         + A+L +   +V +DD    IG ++   D +G P  V V      D+ 
Sbjct: 67  SRNSDLSPKARDLAAQLRQWW-NVDFDDAQA-IGKRYRRQDEIGTPFCVTVDFDSPDDNA 124

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
           V ++ R T  +E +S+++V  Y   + 
Sbjct: 125 VTVRERDTMAQERVSIDKVKEYLGGKL 151


>gi|54294413|ref|YP_126828.1| histidyl-tRNA synthetase [Legionella pneumophila str. Lens]
 gi|81679225|sp|Q5WWH1|SYH_LEGPL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|53754245|emb|CAH15722.1| histidyl-tRNA synthetase [Legionella pneumophila str. Lens]
          Length = 426

 Score = 84.8 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/419 (14%), Positives = 118/419 (28%), Gaps = 16/419 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        +         R G  E+  P +++  L+  + G   D   KEM  
Sbjct: 11  GMNDILPDSTSVWRFIEQTFINCLVRYGYKEIRFPIVENTQLFKRTIGEITDIVEKEMYT 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D N  ++   P            H   +      +Y     FR E   +    +  +F
Sbjct: 71  FNDLNGDSITLRPEGTAGCVRACIEHGLLHNQQQKLWYL-GPMFRHERPQKGRYRQFNQF 129

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            ++                  +++             +             +  E++   
Sbjct: 130 GVEALGITGTAIELELISICRRLWTDLGFSQSVQLQVNSLGEINERQKYRSILVEYLRDH 189

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP-- 272
                +    +     P+   ++   D+  L     +        S  H +   + L   
Sbjct: 190 FQILDED-SKRRLDKNPLRVLDSKNPDLQQLIQNAPKLIDVLGDDSREHFQSFCNGLETL 248

Query: 273 ----ENKRVSARGIE-VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                   V  RG++  G   +      L   AT       D  V+            A 
Sbjct: 249 GIPYSINPVLVRGLDYYGQTVFEWVTDQLGSQATICAGGRYDMLVEFLGGAPTPAVGFAL 308

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDDMG 385
            +E        +   + +  K S+  I  +++        +   +       DV  +  G
Sbjct: 309 GLERIFLLMETLNLLNESNNKQSIFIIATNEEAIL-KALVMAESIRNAHPSLDVITNTTG 367

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRFS 443
               SQF  AD  G  L +I+G   ++   V IK   T   +  + + ++  +     +
Sbjct: 368 GGFKSQFKKADKSGARLALILGEDEIAREYVSIKDLRTEIEQISIPMTKINEFLQDYLA 426


>gi|299135512|ref|ZP_07028696.1| histidyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
 gi|298601636|gb|EFI57790.1| histidyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
          Length = 446

 Score = 84.8 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 67/434 (15%), Positives = 128/434 (29%), Gaps = 39/434 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKE 92
           G    LP      + V A  R   +R G  E+  P  ++ +L+      E+   D   KE
Sbjct: 19  GTRDLLPDQTPLWNRVEATARAVFSRYGFGEIRTPVFEATELFARGVGEET---DIVSKE 75

Query: 93  MLRLADRND------KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           M    DR        + +   P     +   +  H           Y I  +FR E   R
Sbjct: 76  MFTWEDRARAASEKAQNLTLRPESTAGVVRAYIEHKLGETGQLQKLYYIGPQFRRERPQR 135

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSY--NKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
               R R+F    A        G++      ++      +   LG++   +   S     
Sbjct: 136 G---RYRQFWQIGAEVIGPQTSGAESPLRDAEVLEMLASLLDELGIRDWKLELNSVGNAE 192

Query: 205 DLSHEFIVLAD-----TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           D +   + L +              +     P+   ++  +    + + + +        
Sbjct: 193 DRARFNVALREALAPVKDRMCPDNQRRAETNPLRVLDSKEEADQEIINALPKIADYLGDE 252

Query: 260 SDVHNEKLFDSLPENKRVSA------RGIEV--GHIFY------FGTKYSLPMSATFKGA 305
           S  H E++  +L              RG++      F        GT+ +L     + G 
Sbjct: 253 SREHFEQVKAALDACGVPYHVNPRLVRGLDYYTRTTFEFTVTTGLGTQNALLGGGRYDGL 312

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                  +    G         +   +                   + I         A 
Sbjct: 313 SEMLGGPKAPGIGFAIGEDRLILTLQAQAEADAAASGIAPTEPKLDVYIAPLGIAQNPAA 372

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            K+   L + G  V   D   +IG  F  AD L     +++G   V  + + +K   TG 
Sbjct: 373 LKLARELRREGLSVEVGDGSFKIGKSFGFADKL-ARHIILLGEDEVVTNVLTVKTFSTGE 431

Query: 426 REDMSLEEVINYAS 439
           +  ++ + + +   
Sbjct: 432 QVKVNRDVLADTLR 445


>gi|225012118|ref|ZP_03702555.1| glycyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
 gi|225003673|gb|EEG41646.1| glycyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
          Length = 513

 Score = 84.8 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 84/253 (33%), Gaps = 16/253 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       G  + +  + + +  +           +      +  A YA  
Sbjct: 260 FRMREFEQMEMQFFIPPGTQKGWY-EHWKETRLNWHLNLGMGKDNYRFHDHEKLAHYADA 318

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     +      E + + +R            K++      F     +++   +    I
Sbjct: 319 ASDIEFRFPFGFKELEGIHSRTDFDLSSHE---KFTGKKLQYFDPERNENYVPYVVETSI 375

Query: 320 GAMRVVAAV---------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R+  AV         +E       +  P +++P K++++ +   D    +    I  
Sbjct: 376 GLDRMFLAVFSNALKEEVLEDGSTRTVLKLPPALSPTKVAVLPLVKKD-GLPELARSIVD 434

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L        +D+    +G ++   D LG P  + V  + + D  V ++ R + ++E + 
Sbjct: 435 ELK-WSFSTNYDEKDA-VGRRYRRQDALGTPYCITVDHQSLEDQTVTLRERDSMLQERIG 492

Query: 431 LEEVINYASHRFS 443
           + ++    + + S
Sbjct: 493 ISDLEKAITAQVS 505


>gi|149375010|ref|ZP_01892783.1| histidyl-tRNA synthetase [Marinobacter algicola DG893]
 gi|149360899|gb|EDM49350.1| histidyl-tRNA synthetase [Marinobacter algicola DG893]
          Length = 417

 Score = 84.8 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 63/439 (14%), Positives = 113/439 (25%), Gaps = 67/439 (15%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V   +R+  ++ G  E+ +P ++  DL+  S G   D   KEM    DRN
Sbjct: 5   LPEQTPVWQFVEDTVRKVLSQYGYQEIRMPVVEQTDLFKRSIGEVTDIVEKEMYTFEDRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-------------- 146
             ++   P            H   +       +     FR E   +              
Sbjct: 65  GDSLTLRPEGTAGCVRAAEEHGLLFNQ-TRRLWYTGPMFRHERPQKGRYRQFHQIGVECF 123

Query: 147 ------------------FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
                             +  +   E    +     +    ++  Y +  V+YL  +   
Sbjct: 124 GMAGPDIDAELLVLTARLWRALGLCEHTRLE--INSIGTSAARKEYREALVAYLSDYRDQ 181

Query: 189 GLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
                  R  S P  I    + E   L            D          +  D      
Sbjct: 182 LDDDSQRRLGSNPLRILDSKNPETQRLLVDAPRLDDYLDDESREHFRQLRSLLDAAGIEY 241

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           ++  +             E + DSL     + A G   G +   G K +           
Sbjct: 242 TVNSKLVRGLDYYGKTVFEWITDSLGAQGTICAGGRYDGLVEQLGGKST----------- 290

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
                              A  +E        +     +      + + A  +       
Sbjct: 291 --------------VAVGFAMGLERLILLLETLNLVPDSANGNVDVYVAAMGESTVAPAL 336

Query: 367 KIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +   L     G  V     G    SQ   AD  G    VI+G   V++    +K   + 
Sbjct: 337 ALGESLRDALPGVTVMGHCGGGSFKSQMKKADRSGARYAVILGENEVANGTAGLKPLRSD 396

Query: 425 I-REDMSLEEVINYASHRF 442
             ++D++  ++        
Sbjct: 397 EAQQDVAQGDLAATLEELL 415


>gi|91070259|gb|ABE11178.1| histidyl-tRNA synthetase [uncultured Prochlorococcus marinus clone
           HF10-11H7]
          Length = 426

 Score = 84.8 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 63/424 (14%), Positives = 122/424 (28%), Gaps = 26/424 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G     P       NV  I+ E+ +R    E+  P L+  +L++       D   KEM  
Sbjct: 9   GTVDLFPDQLIKWQNVEKILLEQLSRASIKEIRTPILEMTELFIRGIGEGTDVVSKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +++    P     +      +  S       +Y +   FR E        R R+F
Sbjct: 69  FLDRGERSCTLRPEGTASVARALIQNGISSNPHQKLWY-MGPMFRYERPQAG---RQRQF 124

Query: 156 LMKD-AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                 +    +           +    ++  +     I    ++     +    F+   
Sbjct: 125 HQLGVEFIGHDSVRSDVEIIALAWDILGKLGIKELNLEINTLGDTND-RSNFQKSFLKWL 183

Query: 215 DTGET--QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN-------E 265
           +T +    +         P+   ++       +     +     +  S           E
Sbjct: 184 ETNKDSLDLDSQNRISKNPLRILDSKNIQTKKVLENAPRLFNFLSEKSHNRYLDLKRQLE 243

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            L     EN  +        H  +  T  +L   AT  G    D  ++     +G     
Sbjct: 244 VLKIPYVENFNLVRGLDYYTHTAFEITSGALGSQATVCGGGRYDDLIKQ----MGGPNTP 299

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           A       +   ++    +   + + I I     V       +  +L      V  D  G
Sbjct: 300 AIGFAIGLERLILLAGKELEIPRNTDIYIINQGLVAESLAMDLSRKLRNYDLLVELDLSG 359

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL----TGIREDMSLEEVINYASHR 441
                QF  A+ L     +++G     + +  I+           E +S E  I    + 
Sbjct: 360 ASFSKQFKKANKLKSKSIIVIGDDEAVNGEFIIRLFDQSGNGNEEEVISFENDI-KLENW 418

Query: 442 FSNN 445
            +NN
Sbjct: 419 INNN 422


>gi|86141018|ref|ZP_01059577.1| glycyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
 gi|85832960|gb|EAQ51409.1| glycyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
          Length = 511

 Score = 84.8 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 82/253 (32%), Gaps = 16/253 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       G+   +  + + +  +    +      +      +  A YA  
Sbjct: 260 FRMREFEQMEMQFFVRPGDELKWY-EHWKETRLKWHLSLGLGEENYRFHDHEKLAHYANA 318

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +            E + + +R            ++S      F     +++   +    I
Sbjct: 319 AADIEFDFPFGFKELEGIHSRTDFDLKAHE---EFSGKKLQFFDPELNENYVPYVVETSI 375

Query: 320 GAMRVVAAVIESSHDGKGII---------WPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R+  AV   S + + +           P  +AP K +++ +   D    +  +KI  
Sbjct: 376 GLDRMFLAVFSKSLEEEELENGSTRTVLKLPAILAPVKAAILPLVKKD-GLPEVAQKIID 434

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L     +V +D+    +G ++   D  G P  + V    + D  V I+ R T  ++ + 
Sbjct: 435 DLK-FDFNVAYDEKDA-VGRRYRRQDAAGTPFCITVDHDTLEDESVTIRDRDTMEQKRVK 492

Query: 431 LEEVINYASHRFS 443
           + E+      +  
Sbjct: 493 ISELATILHEKID 505


>gi|118444233|ref|YP_877921.1| histidyl-tRNA synthetase [Clostridium novyi NT]
 gi|166227963|sp|A0PZW9|SYH_CLONN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|118134689|gb|ABK61733.1| histidyl-tRNA synthetase [Clostridium novyi NT]
          Length = 416

 Score = 84.8 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/403 (13%), Positives = 114/403 (28%), Gaps = 18/403 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   +++        E+  P  +  +L+        D   KEM    D+ D+++   
Sbjct: 20  WHYIEDKLKKLAAEYALKEIRTPAFEHTELFERGVGETTDVVQKEMYTFKDKGDRSITLK 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         F  +      LP   +     FR E   +  +    +F ++   S + + 
Sbjct: 80  PEGTAPAARAFIENGLFNEALPIKMFYFTPVFRYENVQKGRLREHHQFGVEVFGSTEASV 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +              RI +     +     E      D   E+   +   E    C   F
Sbjct: 140 DAELIGLAMRAFKEFRIDNLELNINNIGCPECRKKYNDALREYFRES-YDELCDTCKTRF 198

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSARG 281
              P+   +        +                 H E L   L       +      RG
Sbjct: 199 ERNPMRLLDCKNKKCKEIGKDAPVILDYVCDDCSNHFENLKTYLDSLNIKYKVNPYIVRG 258

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           ++      F    +          +G  +      +  +G    +  +I +  +    I 
Sbjct: 259 LDYYTKTVFEIINNDITVCGGGRYNGLIEQIGGKPTPAVGFGMGIERLILTLMENNIEIP 318

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
                   I  +      +       K+   L   G     D M + + +Q   A+ +  
Sbjct: 319 KPKEMDIFIGSMGDNGKIE-----AFKLVNALRTKGLKAECDHMNKSVKAQMKYANKIDA 373

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMS---LEEVINYASH 440
              +I+G   + + K  +K    G + ++S   L+E+ +    
Sbjct: 374 SYSMIIGDTEIEEKKANLKRMEDGQQFEVSLNNLDEIASMILK 416


>gi|73976563|ref|XP_532502.2| PREDICTED: similar to Glycyl-tRNA synthetase (Glycine--tRNA ligase)
           (GlyRS) [Canis familiaris]
          Length = 749

 Score = 84.8 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 75/283 (26%), Gaps = 24/283 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 431 FRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKE 490

Query: 241 --------------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                          I        +    Y A  D       + L   K       E G 
Sbjct: 491 PKTVNVVQFEPSKGAIGKAYKKDAKLVLEYLAVCDECYITEMEKLLNEKGEFTVETE-GK 549

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            F              K    ++    +     G  R++  V E +   +      +   
Sbjct: 550 TFQLTKDMVSVKRFQ-KTLHVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFS 608

Query: 347 FKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           F   +   K      + +Q      +++   L++ G     DD    IG ++A  D +G 
Sbjct: 609 FPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSGSIGRRYARTDEIGV 668

Query: 401 PLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHR 441
              + +    V+       ++ R +  +    + E+ +     
Sbjct: 669 AFGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPSVVCDL 711



 Score = 49.7 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 147 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 206

Query: 96  LADRNDK 102
                + 
Sbjct: 207 DVKNGEC 213


>gi|322390642|ref|ZP_08064156.1| histidine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
 gi|321142615|gb|EFX38079.1| histidine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
          Length = 430

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 62/399 (15%), Positives = 113/399 (28%), Gaps = 19/399 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 23  WQYVEGFARKVFARYNYDEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 82

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P  FY I   FR E        R R+F       F  
Sbjct: 83  PEGTAPVVRSYVENKLFAPEVQKPSKFYYIGPMFRYERPQAG---RLRQFHQIGVECFGS 139

Query: 165 LTPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             P     +              +     + LG  +         I   L  +  +  D+
Sbjct: 140 SNPATDVETIAMAAQFLKELGIDNVTLHLNTLGSPASRQAYRQALIDYLLPMKDQLSKDS 199

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    +   S+ + + E+  A + A   +  +     + +  
Sbjct: 200 QRRLEENPLRVLDSKEKEDKAAVEQAPSILDYLDEESQAHFDAVRRMLEDLGVAYVIDTN 259

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 260 MVRGLDYYNHTIFEFITEI-EGNELTV-CAGGRYDGLVEYFGGPATAGFGFGIGVERILL 317

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +         I        +A   +   L   G     D +G ++ +QF  A
Sbjct: 318 VLEKKGIELPIETGLDAYIAVLGDEVNEAALSLVQALRIQGFKAERDYLGRKLKAQFKSA 377

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           D+      + +GS  V   +V +K+  T     ++LE +
Sbjct: 378 DVFAAKALITLGSSEVESGQVTVKNNQTRQEVTVALENL 416


>gi|296209315|ref|XP_002751477.1| PREDICTED: glycyl-tRNA synthetase isoform 2 [Callithrix jacchus]
          Length = 729

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 82/308 (26%), Gaps = 24/308 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 394 TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 453

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 454 RSCYDLSCHSQATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICD 513

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 514 ECYITEMEMLLNEKGEFTVETE-GKTFQLTKDMVNVKRFQ-KTLYVEEIVPNVIEPSFGL 571

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 572 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRH 631

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 632 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEVSE 691

Query: 434 VINYASHR 441
           + +     
Sbjct: 692 LPSIVRDL 699



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 135 SGLYDFGPVGCALKNNIIQAWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 194

Query: 96  LADRNDK 102
                + 
Sbjct: 195 DVKNGEC 201


>gi|225685037|gb|EEH23321.1| glycyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 656

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 83/284 (29%), Gaps = 21/284 (7%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +              ++         E +  AD     +   K+    P+    T  +
Sbjct: 352 MRQHMQNEMAHYAKDCWDAELFTTYGWIECVGCADRSAYDLTVHKNKTGAPLFVRETRSE 411

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--------------ENKRVSARGIEVGH 286
            +      ++     +        + +  ++               +        ++   
Sbjct: 412 PLRIEEWQIDLDKKKFGPRFRKDGKAVEAAVNALSQDLRAKLSLDLKENGKIEIDVDGVR 471

Query: 287 IFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                 +  +          + +++   +     G  R++A ++E  +  +       V 
Sbjct: 472 SGKVELEKDIINIEKRTRVENIREYTPNVIEPSFGIGRILACLMEHVYWSRPDDEARGVL 531

Query: 346 PFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            F   +   K      +++   +    ++  +L ++G     DD    IG ++A  D LG
Sbjct: 532 SFPPIVAPTKVLLVPLSNNPSFQPLVHRLTLKLRRLGVSNRVDDSSASIGKRYARNDELG 591

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P  + V  + V D+   ++ R T  +   S EE+         
Sbjct: 592 TPFGITVDFQSVKDNTFTLRERDTTKQVRASEEEICKAVKSLVE 635



 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 1/86 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     NV  + R+        +E+    L   D+   SG  D +   M +
Sbjct: 38  SGLYDYGPPGCALQANVVDLWRKHFVLEEDMLEVDCTMLTPHDVLKTSGHVDKFADWMCK 97

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSH 121
                +         E + T +    
Sbjct: 98  DPKTGEIFRADHLVEEVLETRLRGDK 123


>gi|104162038|emb|CAJ75746.1| histidyl-tRNA synthetase [uncultured Thermotogales bacterium]
          Length = 424

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/407 (14%), Positives = 111/407 (27%), Gaps = 27/407 (6%)

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHE 111
             IIR   ++    E+  P  ++ +L+  S     D   KEM    D+  +++   P   
Sbjct: 27  EEIIRNISHKYAFTEIRTPIFEATELFKRSVGESTDVVQKEMYTFEDKGGRSITLRPEGT 86

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEGS 170
             +   F  +       P   +     FR E        R R+F    A      +P   
Sbjct: 87  ASVARAFIENSFINLGSPVKLFYSGPMFRYEKPQAG---RLRQFHQFGAEILGSESPLAD 143

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                  +     +        I       P   +     +    + +    C      +
Sbjct: 144 FEIIEMAYSFLKELKINNAKLFINSIGC--PACREDYKTALKEYYSDKLAGMCPDCQRRY 201

Query: 231 PIPSENTDFDDI-ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK------RVSARGIE 283
                      I   L            +    H E+L   L          +   RG++
Sbjct: 202 ETNVLRLLDCKIDKGLVQGAPGILDYLDSDCRSHFEELQWYLERAGIDYEVDQFLVRGLD 261

Query: 284 VGHIFYFGTKYSL--PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
                 F  + S          G         +G     A+     +       K     
Sbjct: 262 YYTRTAFEIRSSSLGSQDQLVGGGRYDGLVEYIGGKSCPAVGFAIGLERIVMLLKSENVR 321

Query: 342 DSVAPFKISLINIKAHDQVCR--DACEKIYARLSKVGCDVFWD--DMGEQIGSQFAVADL 397
            +        I     ++  R  D       RL K+G   F D  +   +  ++   A  
Sbjct: 322 INGPETSEVAILTFGREESVRGFDYA----KRLRKMGVSTFVDVMERNMR--NKMKHASR 375

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +G  + +++G + +    V IK    G +  +  + + +Y   +  +
Sbjct: 376 IGAKISLLIGKEEIERDIVTIKVMNDGSQFQVDSDYMADYVVDKLRD 422


>gi|308158015|gb|EFO60895.1| Glycyl-tRNA synthetase [Giardia lamblia P15]
          Length = 621

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 68/232 (29%), Gaps = 1/232 (0%)

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           F+   +  E         M         D + + S    ++                   
Sbjct: 368 FLKYPEPREVSYNICTLRMKECAKIFKQDVNLVRSAIEAIQGEDLEALKAELRTTGSYTL 427

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
            +P     + +  E+   +      +  +          +    +G      +       
Sbjct: 428 RIPREDGEAEKTFEILPNYVQFNSDTKMLHGESIVPHVIEPSFGVGRILYSILEHSFYTR 487

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           +         +   +   K  ++ ++ +D         +  RL + G     D  G  IG
Sbjct: 488 DIDEQRTVFRFKPYLVGCKAVVLPLQRNDD-LLSMSSHVLERLRRSGIAAKQDATGAPIG 546

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            ++A AD +G P  V +  + + D  V I+ R +  +  +  +++    ++ 
Sbjct: 547 RRYARADEIGIPFAVTIDFQTLEDGSVTIRERDSMSQIRIGSKQISQVIANL 598



 Score = 39.3 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 7/84 (8%)

Query: 26  MLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSAD 78
           ++R   I           G+Y   P   +  +N  ++ R+        +E+    +    
Sbjct: 10  LVRRFFIVPAFEIYGGVAGLYDLGPSTTELRNNFLSMWRQHFVIAEDMLEIMCTNIVPDK 69

Query: 79  LWVESGRYDSYGKEMLRLADRNDK 102
           +   SG    +   M++     + 
Sbjct: 70  VLQASGHVARFADVMVKDTKNGEC 93


>gi|296209313|ref|XP_002751476.1| PREDICTED: glycyl-tRNA synthetase isoform 1 [Callithrix jacchus]
          Length = 739

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 82/308 (26%), Gaps = 24/308 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 404 TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 463

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 464 RSCYDLSCHSQATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICD 523

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 524 ECYITEMEMLLNEKGEFTVETE-GKTFQLTKDMVNVKRFQ-KTLYVEEIVPNVIEPSFGL 581

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 582 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRH 641

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 642 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEVSE 701

Query: 434 VINYASHR 441
           + +     
Sbjct: 702 LPSIVRDL 709



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 145 SGLYDFGPVGCALKNNIIQAWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 204

Query: 96  LADRNDK 102
                + 
Sbjct: 205 DVKNGEC 211


>gi|313760928|gb|ADR79441.1| glycyl-tRNA synthetase-like protein [Liriodendron tulipifera]
          Length = 688

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 74/283 (26%), Gaps = 12/283 (4%)

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--LSHEFIVLADTG 217
                   +         +     +       +  +RA +   G       ++    +  
Sbjct: 393 NEMAHYAADCWDAEIECSYGWIECVGIAD-RSAYDLRAHTEKSGVSLVAHEKYAEPREVE 451

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           +  +  +K  M            + +   +  E      A  S    E    +L +    
Sbjct: 452 QLVIAPAKKEMGLAFKGSQKMVVEALEAMNDAEAMEMKTALESQGQVEFNVCTLGK---- 507

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
               I    +     K                  +    Y +          ++  +   
Sbjct: 508 -TVTITKNMVSISRQKKKEHQRVFTPSVIEPSFGIGRIIYCLFEHSFYMRASKAGDEQLN 566

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +    S+       +      Q   +    I   L+  G     D  G  IG ++A  D 
Sbjct: 567 VFRFPSLVAPIKCTVFPLVQQQQYEEVAILISKSLTAAGISHKIDITGTSIGKRYARTDE 626

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           LG PL + V     S S V I+ R +  +  +S+ EV +    
Sbjct: 627 LGVPLAITVD----STSSVTIRERDSKDQIRVSINEVASVVKE 665



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYD 87
           +  I++   G+Y + P G     NV A  R+        +E+  P +    +   SG  D
Sbjct: 94  SFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVDCPCVTPEVVLKASGHVD 153

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +   M++  ++           ++  
Sbjct: 154 KFTDLMVKD-EKTGTCYRADHLLKDFC 179


>gi|115351800|ref|YP_773639.1| histidyl-tRNA synthetase [Burkholderia ambifaria AMMD]
 gi|170702838|ref|ZP_02893687.1| histidyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
 gi|172060771|ref|YP_001808423.1| histidyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
 gi|122323093|sp|Q0BEW8|SYH_BURCM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558658|sp|B1YR43|SYH_BURA4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|115281788|gb|ABI87305.1| histidyl-tRNA synthetase [Burkholderia ambifaria AMMD]
 gi|170132256|gb|EDT00735.1| histidyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
 gi|171993288|gb|ACB64207.1| histidyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
          Length = 446

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/431 (13%), Positives = 106/431 (24%), Gaps = 39/431 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FTDALNGENLTMRPENTAAVVRASIEHNMLYDGPKRLWYIGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 TGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-------- 265
                +     +     P+   +T    +  +     +        S  H E        
Sbjct: 193 QFADVLDEDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGDESRAHFEGLQRLLLA 252

Query: 266 -----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                K+   L          +        G + ++     +     +       + G  
Sbjct: 253 NNIPFKINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWA 312

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                   +    D         V              +  R+       RL   G DV 
Sbjct: 313 MGIERILELLKEEDLAPEQEGVDVYVVHQG--------ETAREQAFIAAERLRDTGLDVI 364

Query: 381 W----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGI------REDM 429
           +    D       SQ   AD  G    VI G + V++  V +K  R  G       ++ +
Sbjct: 365 FHCSADGAPASFKSQMKRADASGAAFAVIFGEEEVANGTVGVKALRGAGEEGEKNVQQTV 424

Query: 430 SLEEVINYASH 440
            +E +  +  +
Sbjct: 425 PVESLTEFLIN 435


>gi|170050075|ref|XP_001859192.1| glycyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167871658|gb|EDS35041.1| glycyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 736

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 60/414 (14%), Positives = 124/414 (29%), Gaps = 76/414 (18%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R    +   LPF   QI   FR+E+ PR G++R REF M +   F
Sbjct: 298 FLRPETAQGIFVNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMCEIEHF 357

Query: 164 DLTPEGSKHSYNKMFVS----YLRIFHRLGLKSIPMRAESGPIGGDLSHE----FIVLAD 215
                     +  +       Y       G  +  ++       G +++E    F+    
Sbjct: 358 CDPQLKDHPKFENVRDVVMTLYSACNQMDGKSAQQIKIGDAVASGLVANETLGYFMARIQ 417

Query: 216 TGETQV--------FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD---VHN 264
               ++        F      +    + +    + ++    VE       +  D     N
Sbjct: 418 QFMLKIGILPDRLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHTN 477

Query: 265 EKLFDSLPENKRVSARGIE----------VGHIFYFGTKYSLPMSATF------------ 302
                 + E K  + + IE          +G +F    K    + A              
Sbjct: 478 ATGVKLVAEKKLPAPKTIEVTEVVPNKAAIGKVFKKDAKNITELLAKLSLDEVETIGKNL 537

Query: 303 -------KGADG---------------------KDHYVQMGSYGIGAMRVVAAVIESSHD 334
                     +G                     ++    +     G  R++ +++E S  
Sbjct: 538 AGSGEHTLDVNGTAVTLKSDMIAVKSSSKTVHVEEITPSVIEPSFGVGRIMYSLLEHSFQ 597

Query: 335 GKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +              +  +K      +++       +KI + L+ V      DD    I
Sbjct: 598 MREGDEQRCYFSLPPVVAPLKCSVLPLSNNADFTPFVKKISSALTSVDISHKVDDSSGSI 657

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHR 441
           G ++A  D +  P  V +    + +   V ++ R +  +  + L+EV       
Sbjct: 658 GRRYARTDEIAIPYGVTIDFDTLKEPHTVTLRERDSLKQVRIGLDEVAGVVRDL 711



 Score = 43.2 bits (100), Expect = 0.094,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+  + R+        +E+    L   
Sbjct: 130 LLKRRFFYDQSFAIYGGITGQYDFGPMGCALKANMINVWRQFFVLEEQMLEVDCSILTPE 189

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  D +   M++     + 
Sbjct: 190 PVLKASGHVDRFADLMVKDVKNGEC 214


>gi|163856331|ref|YP_001630629.1| histidyl-tRNA synthetase [Bordetella petrii DSM 12804]
 gi|163260059|emb|CAP42360.1| hisS [Bordetella petrii]
          Length = 431

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 136/433 (31%), Gaps = 33/433 (7%)

Query: 32  IHQHSK--GIYSWLP-LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY- 86
             + +   G+   LP  G +  +   +I+RE     G   +  P L+   L+    G   
Sbjct: 8   FQKVAAIRGMNDVLPGDGAR-WEQFESIVREWLRGYGYRNVRTPVLEHTRLFARGIGEVT 66

Query: 87  DSYGKEMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
           D   KEM    D  N  ++   P     +      H   Y   P   Y I   FR E   
Sbjct: 67  DIVEKEMYTFTDALNGDSLTMRPEMTAGVVRASIEHNLLYDR-PQRVYSIGPVFRHERPQ 125

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
           R    R R+F   D  +             ++ V   R++ RLGL  + +   S     +
Sbjct: 126 RG---RYRQFHQIDVEALGFAGPDVDA---ELIVMLARLWKRLGLTDVRLELNSLGQPAE 179

Query: 206 LSHEFIVLADTGETQV-----FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
            +     L +  E           +     P+   +T    + ++     +        S
Sbjct: 180 RAAHRAALIEHLERHRDILDEDGQRRLYSNPLRVLDTKNPAMQAMADSAPRLFDFLGDES 239

Query: 261 DVHNEKLFDSLPENKRVSA------RGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQ 313
             H + L   L +            RG++  ++  F      L    T  G    D  ++
Sbjct: 240 RAHFDGLCQLLADAGIEYRLNPRLVRGLDYYNLTVFEWVTDRLGAQGTVCGGGRYDGLIE 299

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           +           A  +E   D      P +  P     + +    +  +    ++  +L 
Sbjct: 300 LLGGKPAPAVGFAIGMERLLDLWEQSVPPA--PTPECEVYVVHQGEAAQRLAARVGEQLR 357

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIRED 428
             G  V          SQF  AD  G  + VI+GS  V+     +K           ++ 
Sbjct: 358 DAGLSVIVHAGSSGFKSQFKRADASGARVAVILGSDEVAAGTASVKFLRADAAGEAAQQQ 417

Query: 429 MSLEEVINYASHR 441
           ++L+ + +    +
Sbjct: 418 VALDRLADVLKSK 430


>gi|325091800|gb|EGC45110.1| glycyl-tRNA synthetase [Ajellomyces capsulatus H88]
          Length = 656

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 23/285 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +              ++         E +  AD     +   K+    P+    T  +
Sbjct: 352 MRQHMMNEMAHYAQDCWDAELFTSYGWIECVGCADRSAYDLTVHKNRTGAPLFVRETRAE 411

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------------ENKRVSARGIEVGHIF 288
            +      ++     +        + +  ++             + K+     I+V  + 
Sbjct: 412 PLRIEEWQIDLDKKKFGPRFKKDGKIVEAAVNALTQDLREKLSLDLKQNGKIEIDVEGVG 471

Query: 289 ----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                 G         T    + +++   +     G  R++A ++E  +  +       V
Sbjct: 472 SGKVELGKDIINIEKRTRV-ENIREYTPNVIEPSFGIGRILACLMEHVYWSRPDDEARGV 530

Query: 345 APFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             F   +   K      ++    +    ++  +L ++G     DD    IG ++A  D L
Sbjct: 531 LSFPPIVAPTKVLLVPLSNHPSFQPLIHRLTLKLRRLGVSNKVDDSSASIGKRYARNDEL 590

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  + V  + V D+   ++ R T  +   S EE+         
Sbjct: 591 GTPFGITVDFQSVKDNTFTLRERDTTKQVRASEEEICEAVKSLVD 635



 Score = 48.2 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     NV  + R+        +E+    L   ++   SG  D +   M +
Sbjct: 38 SGLYDYGPPGCALQANVVDLWRKHFVLEEDMLEVDCTMLTPHEVLKTSGHVDKFADWMCK 97


>gi|240277283|gb|EER40792.1| glycyl-tRNA synthetase [Ajellomyces capsulatus H143]
          Length = 656

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 23/285 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +              ++         E +  AD     +   K+    P+    T  +
Sbjct: 352 MRQHMMNEMAHYAQDCWDAELFTSYGWIECVGCADRSAYDLTVHKNRTGAPLFVRETRAE 411

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------------ENKRVSARGIEVGHIF 288
            +      ++     +        + +  ++             + K+     I+V  + 
Sbjct: 412 PLRIEEWQIDLDKKKFGPRFKKDGKIVEAAVNALTQDLREKLSLDLKQNGKIEIDVEGVG 471

Query: 289 ----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                 G         T    + +++   +     G  R++A ++E  +  +       V
Sbjct: 472 SSKVELGKDIINIEKRTRV-ENIREYTPNVIEPSFGIGRILACLMEHVYWSRPDDEARGV 530

Query: 345 APFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             F   +   K      ++    +    ++  +L ++G     DD    IG ++A  D L
Sbjct: 531 LSFPPIVAPTKVLLVPLSNHPSFQPLIHRLTLKLRRLGVSNKVDDSSASIGKRYARNDEL 590

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  + V  + V D+   ++ R T  +   S EE+         
Sbjct: 591 GTPFGITVDFQSVKDNTFTLRERDTTKQVRASEEEICEAVKSLVD 635



 Score = 48.2 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     NV  + R+        +E+    L   ++   SG  D +   M +
Sbjct: 38 SGLYDYGPPGCALQANVVDLWRKHFVLEEDMLEVDCTMLTPHEVLKTSGHVDKFADWMCK 97


>gi|225562196|gb|EEH10476.1| glycyl-tRNA synthetase [Ajellomyces capsulatus G186AR]
          Length = 656

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 23/285 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +              ++         E +  AD     +   K+    P+    T  +
Sbjct: 352 MRQHMMNEMAHYAQDCWDAELFTSYGWIECVGCADRSAYDLTVHKNRTGAPLFVRETRAE 411

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------------ENKRVSARGIEVGHIF 288
            +      ++     +        + +  ++             + K+     I+V  + 
Sbjct: 412 PLRIEEWQIDLDKKKFGPRFKKDGKIVEAAVNALTQDLREKLSLDLKQNGKIEIDVEGVG 471

Query: 289 ----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                 G         T    + +++   +     G  R++A ++E  +  +       V
Sbjct: 472 SGKVELGKDIINIEKRTRV-ENIREYTPNVIEPSFGIGRILACLMEHVYWSRPDDEARGV 530

Query: 345 APFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             F   +   K      ++    +    ++  +L ++G     DD    IG ++A  D L
Sbjct: 531 LSFPPIVAPTKVLLVPLSNHPSFQPLIHRLTLKLRRLGVSNKVDDSSASIGKRYARNDEL 590

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  + V  + V D+   ++ R T  +   S EE+         
Sbjct: 591 GTPFGITVDFQSVKDNTFTLRERDTTKQVRASEEEICEAVKSLVD 635



 Score = 48.2 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     NV  + R+        +E+    L   ++   SG  D +   M +
Sbjct: 38 SGLYDYGPPGCALQANVVDLWRKHFVLEEDMLEVDCTMLTPHEVLKTSGHVDKFADWMCK 97


>gi|237654046|ref|YP_002890360.1| histidyl-tRNA synthetase [Thauera sp. MZ1T]
 gi|237625293|gb|ACR01983.1| histidyl-tRNA synthetase [Thauera sp. MZ1T]
          Length = 431

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 56/424 (13%), Positives = 120/424 (28%), Gaps = 42/424 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP   +  +    I+R+     G   + +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDILPADAETWEYFEDIVRDWLQSYGYRPIRMPLVEPTPLFKRAIGEVTDIVEKEMYS 69

Query: 96  LADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D  N + +   P            H       P   Y     FR E   +    R R+
Sbjct: 70  FEDALNGEHLTLRPEGTASCVRAAIQHNLIPAGGPQRLYYYGPMFRHERPQKG---RYRQ 126

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F      +       +      M            +        S           I   
Sbjct: 127 FHQIGVEALGFAGADTDAELILMCARLWEDLGLEDVALEINSLGSPEERAQHRAALIAHL 186

Query: 215 DTGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK------ 266
           +  + ++     +     P+   +T   ++ ++     +        S  H E       
Sbjct: 187 EQHQDKLDEDGKRRLYTNPLRILDTKNPELQAIVEAAPRLADYLGDESKAHFEAVQVFLK 246

Query: 267 -------LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
                  +   L        R +        G + ++     + G              +
Sbjct: 247 DAGIPYRINHRLVRGLDYYNRTVFEWVTTRLGAQGTICAGGRYDGLFEQLGGKPQPAAGF 306

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI----YARLS 373
            IG  R++        + +  +    V                  +A +++       L 
Sbjct: 307 AIGIERLLLLWQACGGEAERPVPDVYVVS--------------VGEAAQRLGFRAAETLR 352

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLE 432
           + G  V     G    SQ   AD    P+ +++G    +  +V +K  R+ G ++ ++++
Sbjct: 353 EHGFAVLMHCGGGSFKSQMKKADASEAPVAIVIGEDEAAAGEVGLKPLRVAGAQQRVAID 412

Query: 433 EVIN 436
           +++ 
Sbjct: 413 DLVE 416


>gi|307719261|ref|YP_003874793.1| histidyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
 gi|306532986|gb|ADN02520.1| histidyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
          Length = 437

 Score = 84.4 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 70/443 (15%), Positives = 129/443 (29%), Gaps = 51/443 (11%)

Query: 31  MIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDS 88
           MI  +  KG   +LP  +    ++   + E     G + +  P L+ A+ L  +SG    
Sbjct: 1   MIQPRVLKGFRDFLPDLEARKKSIVRTLEEVFTSFGYLPIDTPVLEYAEILLGKSG--GE 58

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             K++ R  D   + +                H+     LPF  Y I   FR E   R  
Sbjct: 59  TEKQVYRFTDHGGRDVALRFDLTVPFARFMAQHMAELY-LPFRRYHIAKVFRGENTQRG- 116

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL-------------------RIFHRLG 189
             R REF+  D          +      +    L                       RLG
Sbjct: 117 --RYREFMQCDFDIVGPDSTSADLEVLLIMQKALASLGMERFTIHLSHRGVLQDFLARLG 174

Query: 190 LKSIPMRAES----GPIGGDLSHEFIVLADTGETQVFCSKDFM--DFPIPSENTDFDDII 243
           +        +      IG +   E +      E              P  + +   + + 
Sbjct: 175 VSEPVEVLRTVDKIRKIGREKVRETLAQLSDEERAGRILDFIAPGSEPEEALSRMEEGVG 234

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFY-----FGTKYSL 296
           + N  + +    +A   ++     F   P       RG++   G +F           S+
Sbjct: 235 ADNPHLARLKEIWAVIGELGLAGFFTIDP----SITRGLDYYTGVVFETFLSDLPDIGSV 290

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                +    G      M   G                    I   +     + +     
Sbjct: 291 CSGGRYDNLVGLYSTQSMSGVGASIGLDRLMAAMQELGMLEAIPTMAPEVLVVCM----- 345

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            ++        + A L   G          ++G QF+ A+  G P  +I+G   ++   +
Sbjct: 346 -EERFLAHYHGVAAALRARGVRTEVYPQARKLGQQFSYAEKKGIPFALIMGEDEIAAGTM 404

Query: 417 EIKHRLTGIREDM-SLEEVINYA 438
            +K  +   +  +  LEEV++  
Sbjct: 405 ALKDLVARTQRVVQGLEEVVDAV 427


>gi|302336158|ref|YP_003801365.1| histidyl-tRNA synthetase [Olsenella uli DSM 7084]
 gi|301319998|gb|ADK68485.1| histidyl-tRNA synthetase [Olsenella uli DSM 7084]
          Length = 437

 Score = 84.4 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 61/451 (13%), Positives = 117/451 (25%), Gaps = 58/451 (12%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV---- 81
            L  G                 +A  ++  + RE     G   +  P ++  D +V    
Sbjct: 10  DLFGGY---------------MRAWQHMQDVARELLGTYGFDMIETPAIEQVDTFVHGIG 54

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV-----------------MTDIFRSHIKS 124
            S   D   KEM R+        +     E                   +     ++   
Sbjct: 55  AS--TDVVRKEMFRVFSGALMERLLESGSEGGLKAKQRMAMRPEGTAGVVRAAVENNFVP 112

Query: 125 YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYL- 182
               P   +     FR E   +    R R+F            P     S   +   Y  
Sbjct: 113 QGGAPAKLWYAGAMFRGERPQKG---RLRQFHQVGVEWLGASDPAADAESIIMLMEFYKR 169

Query: 183 ---RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                       +    AE  P       +FI+     E    C +     P+ + +   
Sbjct: 170 LGFPAERLQLRINSMGDAECRPAYRASVRQFILDH-ADEMCEDCLERAEINPLRAFDCKN 228

Query: 240 DDI--------ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           D          ++ +++ +     YA      +E     + +   V         +F   
Sbjct: 229 DRCREVMATAPLAKDNLCDGCAIHYAKVKQYLDEAGVTYVEDPTLVRGLDYYTRTVFEVE 288

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            + S   +    G       ++ G    G               + +             
Sbjct: 289 CEGSRVGAIGGGGRYDGLMELEGGKPTPGIG-FAVGFERMCLALRSLGVDVEGEDPGCVY 347

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +   +  +        +   L   G     D  G  + SQF  AD LG  L V++GS  +
Sbjct: 348 VACTSAAERDAVFSATLA--LRGAGVRTEADYQGRSLKSQFKQADKLGARLCVVLGSDEI 405

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +     ++   T  +  + + E+      + 
Sbjct: 406 AAGVATLRDMRTHEQGRVPMGELAARVVEKL 436


>gi|114612674|ref|XP_001166063.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
          Length = 683

 Score = 84.4 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 84/312 (26%), Gaps = 24/312 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 348 TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 407

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 408 RSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICD 467

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 468 ECYITEMEMLLNEKGEFTIETE-GKTFQLTKDMVNVKRFQ-KTLYVEEVVPNVIEPSFGL 525

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 526 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRH 585

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 586 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISE 645

Query: 434 VINYASHRFSNN 445
           + +      + N
Sbjct: 646 LPSIVRDLANGN 657



 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 89  SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 148

Query: 96  LADRNDK 102
                + 
Sbjct: 149 DVKNGEC 155


>gi|262371651|ref|ZP_06064930.1| histidyl-tRNA synthetase [Acinetobacter junii SH205]
 gi|262311676|gb|EEY92761.1| histidyl-tRNA synthetase [Acinetobacter junii SH205]
          Length = 430

 Score = 84.4 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/419 (11%), Positives = 114/419 (27%), Gaps = 21/419 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP    A  ++   +    +  G  ++ +P ++   L+  +     D   KEM    D+ 
Sbjct: 14  LPSQTAAWRSLEQQLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMYTFFDKG 73

Query: 101 DKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
           +         E     +         R      + +   FR E   +    +  +F ++ 
Sbjct: 74  NPPESLTLRPEGTAGCVRAMLEHNLLRGATPRVWYVGPMFRYEKPQKGRYRQFHQFGVET 133

Query: 160 AYSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
                   +                        + LG         +  +     H+  +
Sbjct: 134 FGVATPDIDAEIILMTARLWNRMGVVDKVQLELNTLGETDERTEYRNALVAFLNEHKDAL 193

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY------AATSDVHNEK 266
             D+           +D  I S     ++   L+  +++ +  +        T       
Sbjct: 194 DEDSQRRLTTNPLRILDSKIESTQKILENAPKLHDFLKEDSLNHFNQLQQYLTDAGIQFV 253

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           +   L        + +        G++ ++     + G  G+       S       +  
Sbjct: 254 INQKLVRGLDYYNKTVFEWTTTMLGSQGTVCAGGRYDGLVGQLKGKADQSVPAVGFAMGM 313

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDDM 384
             +    +      P       +          +     E++   L  V           
Sbjct: 314 ERLLLLLEQVEQAKPVRDCEVFLLAEPAYQAKALV--LAEQVRDELEAVNSSIRFKT-GS 370

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              + SQ   AD  G    VI+G +     ++ +K   TG +  +++ E+  +   +F 
Sbjct: 371 QGSMKSQMKKADQSGAIYAVILGEREWESQQLLVKELATGEQSQVAVTELTAFLLEKFK 429


>gi|154284101|ref|XP_001542846.1| glycyl-tRNA synthetase 1 [Ajellomyces capsulatus NAm1]
 gi|150411026|gb|EDN06414.1| glycyl-tRNA synthetase 1 [Ajellomyces capsulatus NAm1]
          Length = 582

 Score = 84.4 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 85/285 (29%), Gaps = 23/285 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +              ++         E +  AD     +   K+     +    T  +
Sbjct: 278 MRQHMMNEMAHYAQDCWDTELFTSYGWIECVGCADRSAYDLTVHKNRTGASLFVRETRAE 337

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------------ENKRVSARGIEVGHIF 288
            +      ++     +        + +  ++             + K+     I+V  + 
Sbjct: 338 PLRIEEWQIDLDKKKFGPRFKKDGKIVEAAVNALTQDLREKLSLDLKQNGKIEIDVEGVG 397

Query: 289 ----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                 G         T    + +++   +     G  R++A ++E  +  +       V
Sbjct: 398 SGKVELGKDIINIEKRTRV-ENIREYTPNVIEPSFGIGRILACLMEHVYWSRPNDEARGV 456

Query: 345 APFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             F   +   K      ++    +    ++  +L ++G     DD    IG ++A  D L
Sbjct: 457 LSFPPIVAPTKVLLVPLSNHPSFQPLIHRLTLKLRRLGVSNKVDDSSASIGKRYARNDEL 516

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G P  + V  + V D+   ++ R T  +   S EE+         
Sbjct: 517 GTPFGITVDFQSVKDNTFTLRERDTTKQVRASEEEICEAVKSLVD 561


>gi|88799906|ref|ZP_01115478.1| histidyl-tRNA synthetase [Reinekea sp. MED297]
 gi|88777337|gb|EAR08540.1| histidyl-tRNA synthetase [Reinekea sp. MED297]
          Length = 416

 Score = 84.4 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/409 (13%), Positives = 119/409 (29%), Gaps = 21/409 (5%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLRLADRNDKAMIY 106
               + + ++   N+ G  E+ +P ++  +L+        D   KEM    DRND ++  
Sbjct: 11  MWQYLESQVKAVLNQYGYREVRMPIVEVTELFARGVGEHTDIVEKEMYTFRDRNDDSLTL 70

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   +  +   +YQ    FR E   +    +  +  ++        
Sbjct: 71  RPEGTAGCVRAALQHGLLHNQVQRLWYQ-GPMFRYERPQKGRYRQFYQIGVETFGMAGAD 129

Query: 167 PEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +                  S     + LG      R     +      +  +  D+   
Sbjct: 130 IDAELILLTHRLFRQLGISDSLTLHLNTLGSAEARSRYRKALVDYLEGVKDQLDEDSQRR 189

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDSLPENKRVS 278
                   +D    S     +D       ++    A +     + +E     +   + V 
Sbjct: 190 LYVNPLRILDSKSASTQALLNDAPRFEDYIDNESKAHFEELCRLLDENGLPYVVNPRLVR 249

Query: 279 ARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                   +F       G + ++     + G        +  + G         ++  + 
Sbjct: 250 GLDYYTKTVFEWMTDALGAQGTVCGGGRYDGLVPMLGGKETPASGFAMGMERLLLLLQTL 309

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           D        +V  + ++   +           E++       G  +  +  G    SQ  
Sbjct: 310 DVIPESIYQTVDVYLVAAGELATRK--AMALAEQVRTDCE--GVRLQLNCGGGSFKSQMK 365

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHR 441
            AD  G    +I+G    ++S+V+IK       ++ +S  EV    +  
Sbjct: 366 KADKSGARFALILGDDEAAESRVQIKDLQGNHEQQSVSWAEVAEVLTRL 414


>gi|300088460|ref|YP_003758982.1| histidyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528193|gb|ADJ26661.1| histidyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 418

 Score = 84.4 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 58/392 (14%), Positives = 109/392 (27%), Gaps = 23/392 (5%)

Query: 63  RTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           R G   +  PT + A L+V +     D  GKEM   ADR    +   P     +   +  
Sbjct: 33  RYGYSRIDTPTFEDARLFVRTVGEETDIVGKEMYTFADRGGSDLTLRPEGTAPVCRAYIQ 92

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H    R  P   + +   FR +           +F        D          +  +  
Sbjct: 93  HGMGSRPKPVKLFYLASIFRYDRPQAGRYREHHQF--GFELIGDGDAAADAEVIDLAWNF 150

Query: 181 Y--LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           Y  L +       +     +          E+    D       C   +   P+   +  
Sbjct: 151 YRELGLSTLPVQLNSIGCPDCRHSYLAALREYYA-TDIEARCADCRVRYEKNPLRLLDCK 209

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSARGIEVGHIFYFGT 292
             +  ++                 H E+L D L       E      RG++      F  
Sbjct: 210 RPECGAVADGAPHSADYLCDDCRTHFERLRDLLAAVGIPFEINHRLVRGLDYYRRTVFEI 269

Query: 293 KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           +     + +  G  G+   +     G     V  A               +V        
Sbjct: 270 QPLEEGAQSTIGGGGRYDGLIEQLGGEPTPAVGFATGIERVILNLKRQNIAVPGLPAPRF 329

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG-----SQFAVADLLGFPLQVIVG 407
            +             + ARL + G  V         G     +Q  +A  +G    +I+G
Sbjct: 330 FLAWLGADAATPAFALGARLRRAGLTV-----NWSPGPRSLKAQLRLASSMGAAYTLILG 384

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              +++ +V ++      +  +SL+ +    +
Sbjct: 385 ENELAEGRVVLRDMAGSEQRSLSLDGLAEALA 416


>gi|115458140|ref|NP_001052670.1| Os04g0398300 [Oryza sativa Japonica Group]
 gi|113564241|dbj|BAF14584.1| Os04g0398300 [Oryza sativa Japonica Group]
          Length = 292

 Score = 84.4 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 13/145 (8%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG---IIWPDSVAPFKISLINIK------ 355
              +     +     G  R++  + E     +         +V  F   +  IK      
Sbjct: 121 EHQRKFTPSVIEPSFGIGRIIYCLFEHCFYQRPGKAEDEQLNVFGFPPLVAPIKCTVFPL 180

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +      +KI   L+  G     D  G  IG ++A  D +G PL + V +       
Sbjct: 181 VKIEKFEVVAKKISKALTAAGISHIIDMTGNTIGKRYARTDEIGVPLAITVDNTT----S 236

Query: 416 VEIKHRLTGIREDMSLEEVINYASH 440
           V ++ R +  +  + ++EV +    
Sbjct: 237 VTVRDRDSKDQIRVEVDEVASVVKE 261


>gi|295660511|ref|XP_002790812.1| glycyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
 gi|226281365|gb|EEH36931.1| glycyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
          Length = 655

 Score = 84.4 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 84/284 (29%), Gaps = 21/284 (7%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +              ++         E +  AD     +   K+    P+    T  +
Sbjct: 351 MRQHMQNEMAHYAKDCWDAELFTTYGWIECVGCADRSAYDLTVHKNKTGAPLFVRETRSE 410

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--------------ENKRVSARGIEVGH 286
            +      ++     +       ++ +  ++               +        ++   
Sbjct: 411 PLRIEEWQIDLDKKKFGPRFRKDSKAVEAAVNALSQDLRAKLSLDLKENGKIEIDVDGVR 470

Query: 287 IFYFGTKYSLPMSATFKG-ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                 +  +          + +++   +     G  R++A ++E  +  +       V 
Sbjct: 471 SGKVELEKDIINIEKRTRVENIREYTPNVIEPSFGIGRILACLMEHVYWSRPDDEARGVL 530

Query: 346 PFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            F   +   K      +++   +    ++  +L ++G     DD    IG ++A  D LG
Sbjct: 531 SFPPIVAPTKVLLVPLSNNPSFQPLVHRLTLKLRRLGVSNRVDDSSASIGKRYARNDELG 590

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P  + V  + V D+   ++ R T  +   S EE+         
Sbjct: 591 TPFGITVDFQSVKDNTFTLRERDTTKQVRASEEEICKAVKSLVD 634



 Score = 47.8 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     NV  + R+        +E+    L   D+   SG  D +   M +
Sbjct: 38 SGLYDYGPPGCALQANVVDLWRKHFVLEEDMLEVDCTMLTPHDVLKTSGHVDKFADWMCK 97


>gi|225163703|ref|ZP_03726006.1| Histidine--tRNA ligase [Opitutaceae bacterium TAV2]
 gi|224801694|gb|EEG19987.1| Histidine--tRNA ligase [Opitutaceae bacterium TAV2]
          Length = 461

 Score = 84.4 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 69/458 (15%), Positives = 130/458 (28%), Gaps = 52/458 (11%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKE 92
           Q   G   + P      +++  + R+  +  G  E   P L+  +L+  +SG  D    +
Sbjct: 5   QSLPGFREFYPDAFARRNHIFRMWRQANHAFGFQEYDAPILEPLELYKAKSG--DEIEAQ 62

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           +    D+  + +   P     +  +  +   +    P  ++ I   +R E   +    R 
Sbjct: 63  LFSFTDKGGRDVALRPEMTPTVCRLVGAKA-NALKRPIKWFSIGEFYRYERAQKG---RE 118

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMF------------VSYLRIFHRLGLKSIPMRA--- 197
           R F   +   F      ++     +               Y+R+  R             
Sbjct: 119 RAFFQLNCDIFGEPGPEAEIELIALLVQAIRSFGLTAADFYVRLSDRNLWFYYLEALGFA 178

Query: 198 -----------ESGPIGGDLSHEFIVLAD---TGETQVFCSKDFMDFPIPS-ENTDFDDI 242
                      +     GD + +    A    T E +    +      +P+ E      I
Sbjct: 179 DAQIRGILSAVDKFEKIGDDAFKPYAEAHGALTPELKAKVLEFLGVKSLPALEKILAPHI 238

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA---RGIEVGHIFYF------GTK 293
               +  E+ TA  A    +        L E   V     RG+     F F      G  
Sbjct: 239 AQNPTAGEKLTARLADWRKLLGGLEAMGLGEFVEVDFGVVRGLAYYTGFVFEAFDRKGEL 298

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV-APFKISLI 352
            ++     +     K  Y  + + G     V   ++             +          
Sbjct: 299 RAIAGGGRYNDLVAKLGYGDLPAVGFAIGDVTMGLLLEQRGLTPAYVQAADIYVVIGDST 358

Query: 353 NIKAHDQVCRDACEKIY-----ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           N  +         E+I        L   G  V +       G QF  A   G  L +I G
Sbjct: 359 NTNSEGGGGGVGKERIAAFGAINDLRAAGYRVEYPLKTTAFGKQFKAAVESGAKLALIFG 418

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           S  ++   V+ +        ++  ++V       FS N
Sbjct: 419 SDELAKGVVKFRDLTDRSEHEIPRDQVPAAVRDFFSGN 456


>gi|33864733|ref|NP_896292.1| histidyl-tRNA synthetase [Synechococcus sp. WH 8102]
 gi|39932069|sp|Q7U9Q6|SYH_SYNPX RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|33632256|emb|CAE06712.1| histidyl-tRNA synthetase [Synechococcus sp. WH 8102]
          Length = 430

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 69/427 (16%), Positives = 118/427 (27%), Gaps = 31/427 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKE 92
           G+   LP   +    V A+ RE   R+G  E+  P L++ DL+       +   D  GKE
Sbjct: 9   GMVDLLPETLQCWQAVEAVAREHFRRSGFGEIRTPLLETTDLFCRGIGEGT---DVVGKE 65

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M    DR ++A    P     +      H    +     +Y     FR E        R 
Sbjct: 66  MYSFTDRGERACTLRPEGTASVVRAALQHGLLSQGAQKLWYA-GPMFRYERPQAG---RQ 121

Query: 153 REFLMKDAYSFDLTPEGSK-HSYNKMFVSY--------------LRIFHRLGLKSIPMRA 197
           R+F              S        +                 L            + A
Sbjct: 122 RQFHQIGVEWLGAESARSDVEVIALAWDLLAQLGVGGLELEINSLGTPEDRQAYRTALVA 181

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                   L  +      T   ++  SK+     +  +     D +S  S          
Sbjct: 182 WLEQRLDQLDDDSRARLSTNPLRILDSKNKDTQALLEQAPTLADALSSESRQRFDAVQQG 241

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            T+     +L   L                   G + ++     + G   +       + 
Sbjct: 242 LTALGIPFRLNPRLVRGLDYYGHTAFEITSDQLGAQATVCGGGRYNGLIAQLGGAPTPAI 301

Query: 318 GI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           G   G  R++  +  ++           VA        I   DQ        +   L   
Sbjct: 302 GWALGMERLLLVLEAAATADPDGAAARLVATSAPDAYVINRGDQ-AETMALTLTRGLRAA 360

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEV 434
           G  V  D  G   G QF  AD  G    +++G    + ++V +K     G     ++ ++
Sbjct: 361 GLAVELDGSGSAFGKQFKRADRCGARWALVLGDDEAARAEVRLKPLQHEGEDRSWAVADI 420

Query: 435 INYASHR 441
                  
Sbjct: 421 AAIVETL 427


>gi|298529646|ref|ZP_07017049.1| histidyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511082|gb|EFI34985.1| histidyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 419

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 60/425 (14%), Positives = 118/425 (27%), Gaps = 45/425 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G +   P    +   +    RE   R    E+  P L+  +L+  S G+  D   KEM  
Sbjct: 9   GFFDLFPPESTSYTFMEDKAREIFARYAYQELRTPILEQTELFARSIGQDTDVVQKEMYI 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  +++   P     +   +     +       F+ +   FR E   +    R+R+F
Sbjct: 69  FPDRRGRSLTMRPEATAGVIRAYIDSPAASSGNVSRFFTLGPMFRYERPQKG---RTRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYL----------------RIFHRLGLKSIPMRAES 199
              +A         +      M   YL                    R G  +       
Sbjct: 126 HQVNAEMLGEDSPYADAEILSMLWGYLQSLGLKELVLEINSLGCPACRPGFDAKLKSFLE 185

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G        +    A +   +V   K      + SE     D +                
Sbjct: 186 GINRDVFCEDCQRRAGSNPLRVLDCKAAGCREVASEAPRIVDNLCPECKEHFDRVLGILK 245

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           S     +L   L        R          G++ ++     + G        ++   G 
Sbjct: 246 SFDIYYELNPFLVRGLDYYQRTTFEVISNDIGSQSAVAGGGRYDGLVKVLGGPEVPGIGF 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                  A++      + + +  +V              +   D    +  RL   G   
Sbjct: 306 ACGMERLALLLQGIQERPMDFYMAVLH------------EDALDKAMLMVRRLRSKGY-- 351

Query: 380 FWDDMGE-QIGSQ-----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
                GE     +        A+       +++G   +  ++V++K   TG++  +S ++
Sbjct: 352 ----RGEMSFQVRSVKSHLRQANKKNVKTCLLLGLDEMHKNQVQVKDMSTGVQRAVSQDD 407

Query: 434 VINYA 438
                
Sbjct: 408 AEQAL 412


>gi|113460551|ref|YP_718615.1| histidyl-tRNA synthetase [Haemophilus somnus 129PT]
 gi|123132004|sp|Q0I2E8|SYH_HAES1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|112822594|gb|ABI24683.1| histidyl-tRNA synthetase [Haemophilus somnus 129PT]
          Length = 425

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 69/415 (16%), Positives = 120/415 (28%), Gaps = 33/415 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               V   +R      G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWVEEKVRSVLQTYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y +   FR E   +    R R+F       F + 
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWY-MGPMFRHERPQKG---RYRQFHQAGVEVFGIA 135

Query: 167 PEGSKHS----YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DT 216
                        +++       H     +     ES         EF+         + 
Sbjct: 136 NPEIDAELILLTARLWKQLGIFDHVTLQLNSIGSLESRQNYRSALVEFLQQHTDLLSEEE 195

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENK 275
            E  V      +D          +D   L   ++Q +   ++   D+ +          K
Sbjct: 196 KERLVKNPLRILDTKNQVLQEVLNDAPKLLDYLDQESREHFSQLCDLLDAVGIQYEINPK 255

Query: 276 RVSARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAV 328
            V         +F       G + ++     + G       H      + +G  R+V  V
Sbjct: 256 LVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATCSVGFAMGLERLVLLV 315

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E +         D    +      +           EKI   L            G   
Sbjct: 316 QEVNKQIVLPSAVDIYVVYFGEKTTL-----PAFQLAEKIRTELP--HLRTMTHCGGGNF 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
             QF  AD +G    +++G   V   +V +K  L G  +  ++L +V+ Y     
Sbjct: 369 KKQFKRADKVGAKFALVIGETEVKTQQVVVKDLLGGAEQLSLALTDVVIYLKQAI 423


>gi|19074790|ref|NP_586296.1| GLYCYL-tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
 gi|74664167|sp|Q8SQZ6|SYG_ENCCU RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Diadenosine
           tetraphosphate synthetase; Short=AP-4-A synthetase;
           AltName: Full=Glycine--tRNA ligase; Short=GlyRS
 gi|19069432|emb|CAD25900.1| GLYCYL-tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
          Length = 579

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/375 (12%), Positives = 105/375 (28%), Gaps = 27/375 (7%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           Y  E+   +             E  +    + H K           +     +E+  +  
Sbjct: 206 YRNEISPRSGLLRVREFDQAEIEHFVLTDEKDHPKFSTVQGIKLKLMHHDASEEITLKEA 265

Query: 149 VMRSREFLMKDAYSFDLTPEGSKH-SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           + R         Y    T         ++  + + +              ++        
Sbjct: 266 IERGIVCNETMGYYIGRTALFLIELGIDRELLRFRQHKKDEMAHYAKGCWDAEIYTSYGW 325

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT-------- 259
            E + +AD     + C +D     +  +    +       +++     + A         
Sbjct: 326 IECVGIADRACYDLSCHEDGSKVDLRCKRRLAEPKEIEEWVLKLDKKEWGAKLRDRFSVL 385

Query: 260 -------SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                  S  + EK   S+ EN+   +   +   I    ++    +          +   
Sbjct: 386 METVNGLSQKYIEKNVVSIGENRNRLSVKFDEYTINIECSRVKKKVFVE-------NVIP 438

Query: 313 QMGSYGIGAMRVVAAVIESSH----DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
            +     G  R++ A+IE S     D + +             I    H     +    I
Sbjct: 439 DVIEPSFGIGRILYALIEHSFYLREDSRPVFRFKPAIAPVQCAIGYLIHFDEFNEHILNI 498

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L+  G  V  ++    IG +++  D LG P  +     F+ D  V I+ R +  +  
Sbjct: 499 KRFLTDNGLVVHVNERSCSIGRKYSSCDELGIPFFITFDPDFLKDRMVTIRERDSMQQIR 558

Query: 429 MSLEEVINYASHRFS 443
           + +E+  +       
Sbjct: 559 VDVEKCPSIVLEYIR 573



 Score = 50.9 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 24  KLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQS 76
           +++ +   I Q +       G+Y   P G     N+ ++ R+        +E+   T+  
Sbjct: 11  QILKKRFFITQSAYIYGGVSGLYDLGPPGLSIKTNILSLWRKHFVLEEDMLEIETTTMLP 70

Query: 77  ADLWVESGRYDSYGKEMLRLADRNDK 102
            D+   SG  D +   ++      D 
Sbjct: 71  HDVLKASGHVDKFCDILVFDEVSGDC 96


>gi|86130875|ref|ZP_01049474.1| glycyl-tRNA synthetase [Dokdonia donghaensis MED134]
 gi|85818286|gb|EAQ39446.1| glycyl-tRNA synthetase [Dokdonia donghaensis MED134]
          Length = 511

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 86/266 (32%), Gaps = 19/266 (7%)

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           R  + +                 FI     GE      K + +  +    +      +  
Sbjct: 250 RNEIVARQFIFRMREFEQMEMQFFIKPGTQGEW----YKHWKETRMKWHLSLGMGEDNYR 305

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
               +  A YA  +     K      E + + +R            ++S      F   D
Sbjct: 306 FHDHEKLAHYADAAADIEFKFPFGFKELEGIHSRTDFDLKAHE---EHSGKKLQYFDHED 362

Query: 307 GKDHYVQMGSYGIGAMRVVAAV---------IESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   +    IG  R+  AV         +E++     +  P  +AP K ++  +   
Sbjct: 363 NASYTPYVLETSIGLDRMFLAVFSNSLVEEELENNTTRTVLKLPAVLAPVKAAVFPLVKK 422

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D    +  ++I   L     +VF+D+    +G ++   D  G P  + V    + D  V 
Sbjct: 423 D-GLPEVAKQIIDDLK-YDFNVFYDEKDA-VGKRYRRQDANGTPFCITVDHDTLEDKMVT 479

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           I+HR T  ++ + + ++        +
Sbjct: 480 IRHRDTMEQKRVLITDLAAIIDKEVN 505


>gi|114612676|ref|XP_001165986.1| PREDICTED: glycyl-tRNA synthetase isoform 1 [Pan troglodytes]
 gi|114612678|ref|XP_001166026.1| PREDICTED: glycyl-tRNA synthetase isoform 2 [Pan troglodytes]
          Length = 616

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 84/312 (26%), Gaps = 24/312 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 281 TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 340

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 341 RSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICD 400

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 401 ECYITEMEMLLNEKGEFTIETE-GKTFQLTKDMVNVKRFQ-KTLYVEEVVPNVIEPSFGL 458

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 459 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRH 518

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 519 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISE 578

Query: 434 VINYASHRFSNN 445
           + +      + N
Sbjct: 579 LPSIVRDLANGN 590



 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 22  SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 81

Query: 96  LADRNDK 102
                + 
Sbjct: 82  DVKNGEC 88


>gi|167562550|ref|ZP_02355466.1| histidyl-tRNA synthetase [Burkholderia oklahomensis EO147]
          Length = 446

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 61/426 (14%), Positives = 114/426 (26%), Gaps = 29/426 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + +   FR E   R    R R+F
Sbjct: 76  FVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYVGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 T--GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               +      +     P+   +T    +  +     +        S  H E L   L  
Sbjct: 193 QHVAQLDDDAQRRLYTNPLRVLDTKNPALQEIVQSAPKLIDFLGDASRAHFEGLQKLLKA 252

Query: 274 NKR------VSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           N           RG++     +F + T     + A    A G  +   +   G       
Sbjct: 253 NNVPFTINPRLVRGLDYYNLTVFEWVTDK---LGAQGTVAAGGRYDPLIEQLGGKPTAAC 309

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW---- 381
              +      + +     V   +   + +       R+    +  RL   G DV      
Sbjct: 310 GWAMGVERILELLKEESLVPEQEGVDVYVVHQGDAAREQAFVVAERLRDTGLDVVLHCSA 369

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-------IREDMSLEEV 434
           D  G    SQ   AD  G    VI G   +++    +K            +++ + +E +
Sbjct: 370 DGAGASFKSQMKRADASGAAFAVIFGEDEIANGTASVKPLRGMGAEGEKNVQQSVPVESL 429

Query: 435 INYASH 440
            ++  +
Sbjct: 430 TDFLIN 435


>gi|156065255|ref|XP_001598549.1| hypothetical protein SS1G_00638 [Sclerotinia sclerotiorum 1980]
 gi|154691497|gb|EDN91235.1| hypothetical protein SS1G_00638 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 665

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 58/151 (38%), Gaps = 9/151 (5%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-------- 356
            + +++   +     G  R++ A++E ++  +G    D           +          
Sbjct: 493 ENTREYTPNVIEPSFGIGRILYALMEHNYWTRGSEGGDEARGVLSFPPIVAPTKVLLVPL 552

Query: 357 -HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +  +   ++I  +L  +G     DD    IG +++  D LG PL + V  + V+DS 
Sbjct: 553 SSHESFKPFLKQISYKLRSMGISSRVDDSSASIGKRYSRNDELGTPLGITVDFQSVNDST 612

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             ++ R +  +   S E+++          +
Sbjct: 613 FTLRDRDSTKQVRASQEKILAAIKELVDGTK 643



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHS-------KGIYSWLPLGQKALDNVNAIIREEQN 62
            L+  P D ++     MLR  M +  S        G+Y + P G     NV  + R+   
Sbjct: 6   TLKGQPLDRQVLDS--MLRRRMFYTPSFEIYNGVAGLYDYGPPGCALQANVIDLWRKHFV 63

Query: 63  -RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
                +E+    L  A++   SG  D +   M +     D
Sbjct: 64  LEEDMLELDCTALTPAEVLQTSGHVDKFADWMCKDPKNGD 103


>gi|170718897|ref|YP_001784068.1| histidyl-tRNA synthetase [Haemophilus somnus 2336]
 gi|189082298|sp|B0USG9|SYH_HAES2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|168827026|gb|ACA32397.1| histidyl-tRNA synthetase [Haemophilus somnus 2336]
          Length = 425

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 69/415 (16%), Positives = 120/415 (28%), Gaps = 33/415 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               V   +R      G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWVEEKVRSVLQTYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y +   FR E   +    R R+F       F + 
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWY-MGPMFRHERPQKG---RYRQFHQVGVEVFGIA 135

Query: 167 PEGSKHS----YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DT 216
                        +++       H     +     ES         EF+         + 
Sbjct: 136 NPEIDAELILLTARLWKQLGIFDHVTLQLNSIGSLESRQNYRSALVEFLQQHMDLLSEEE 195

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENK 275
            E  V      +D          +D   L   ++Q +   ++   D+ +          K
Sbjct: 196 KERLVKNPLRILDTKNQVLQEVLNDAPKLLDYLDQESREHFSQLCDLLDAVGIQYEINPK 255

Query: 276 RVSARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAV 328
            V         +F       G + ++     + G       H      + +G  R+V  V
Sbjct: 256 LVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATCSVGFAMGLERLVLLV 315

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E +         D    +      +           EKI   L            G   
Sbjct: 316 QEVNKQIVLPSAVDIYVVYFGEKTTL-----PAFQLAEKIRTELP--HLRTMTHCGGGNF 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
             QF  AD +G    +++G   V   +V +K  L G  +  ++L +V+ Y     
Sbjct: 369 KKQFKRADKVGAKFALVIGETEVKTQQVVVKDLLGGAEQLSLALTDVVIYLKQAI 423


>gi|242024910|ref|XP_002432869.1| glycyl-tRNA synthetase, putative [Pediculus humanus corporis]
 gi|212518378|gb|EEB20131.1| glycyl-tRNA synthetase, putative [Pediculus humanus corporis]
          Length = 746

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 59/170 (34%), Gaps = 9/170 (5%)

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
            G+ F          +        ++    +     G  R++ A+ E S   + +    +
Sbjct: 558 NGNSFNLPKAMIEVKTQQKV-VHVEEITPNVIEPSFGIGRIIYALFEQSFKTRELDEQRT 616

Query: 344 VAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                  +  IK      +         +K+   L+K+      DD    IG ++A  D 
Sbjct: 617 FLSLPPLVAPIKCSILPLSGKVEFVPFVKKLSEELTKLDISYKVDDSAGSIGKRYARTDE 676

Query: 398 LGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           +  P  V +    +     V ++ R +  +  + +E++ +  S+  S ++
Sbjct: 677 IAIPFGVTIDFDTLQSPHTVTLRERDSMTQVRVPVEDIPDLVSN-LSKSK 725



 Score = 38.2 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 17/90 (18%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIR------EEQNRTGAIEMSVP 72
           L+ R     Q         G + + P+G     N+ +  R      E+      +E+   
Sbjct: 140 LLKRRFFYDQSFAIYGGITGQFDFGPMGCALKSNILSTWRSFFILEEQM-----LEVDCA 194

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDK 102
            L    +   SG  D +   M++     + 
Sbjct: 195 ILTPEPVLKTSGHVDKFADYMVKDVKTGEC 224


>gi|46241865|gb|AAS83111.1| glycyl-tran synthetase [Bos taurus]
          Length = 579

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 82/308 (26%), Gaps = 24/308 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 201 TVLGYFIGRIYLYLTKVGISPEKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 260

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 261 RSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPNKGAIGKAYKKDAKLVMEYLAICD 320

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 321 ECYITEMEKLLNEKGEFTVETE-GKTFQLTKDMVNVKRFQ-KTLHVEEVIPSVIEPSFGL 378

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 379 GRIMYTVFEHTFQVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRH 438

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    + +    V+       ++ R +  +    + E
Sbjct: 439 GLSHKVDDSSGSIGRRYARTDEIGVAFGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSE 498

Query: 434 VINYASHR 441
           + +     
Sbjct: 499 LPSVVRDL 506


>gi|55821938|ref|YP_140380.1| histidyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55823857|ref|YP_142298.1| histidyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
 gi|81676488|sp|Q5LXM9|SYH_STRT1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|81676641|sp|Q5M281|SYH_STRT2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|55737923|gb|AAV61565.1| histidine-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55739842|gb|AAV63483.1| histidine-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
          Length = 426

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 56/400 (14%), Positives = 111/400 (27%), Gaps = 21/400 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  + RE   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVENVARETFKKYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P   Y I   FR E        R REF       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYIGSMFRYERPQAG---RLREFHQLGVECFGS 136

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA--ESGPIGGDLSHEFIVLA------DT 216
             P     +    +  +  +  +     +      +S         +++         D+
Sbjct: 137 KNPATDVETIAMAYQLFNTLGIKDVTLHLNSLGNTDSRLAYRQALIDYLTPMRESLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+    +     + +      + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDYLDEESQTHFDEVRAMLDSLNIPYVIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPM-SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            V         IF F T       +    G          G    G    +         
Sbjct: 257 MVRGLDYYNHTIFEFITNIDKSELTICAGGRYDSLVEYFGGPETAGFGFGLGLERLLLVL 316

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            K  I         + +  + +          ++   +   G     D +G +I +QF  
Sbjct: 317 DKQGIKLPVEESLDVYIAVLGSG---ANGKALELVQSIRYQGFKAERDYLGRKIKAQFKS 373

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           AD       + +G   V    V++K+  T     +S EE+
Sbjct: 374 ADTFKAKTVITLGESEVESGVVKVKNNATREEVTVSFEEL 413


>gi|183982141|ref|YP_001850432.1| histidyl-tRNA synthetase HisS [Mycobacterium marinum M]
 gi|229558696|sp|B2HN79|SYH_MYCMM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|183175467|gb|ACC40577.1| histidyl-tRNA synthetase HisS [Mycobacterium marinum M]
          Length = 420

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 62/391 (15%), Positives = 114/391 (29%), Gaps = 15/391 (3%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            R G   + +P  +   L+        D   KEM   ADR D+++   P     +     
Sbjct: 33  RRAGYGHIELPIFEDTALFARGVGESTDVVSKEMYTFADRGDRSVTLRPEGTAGVVRAVI 92

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            H      LP         FR E RP+ G  R  +  +         P            
Sbjct: 93  EHGLDRGALPVKLCYAGPFFRYE-RPQAGRYRQLQ-QVGVEAIGVDDPALDAEVIAIADA 150

Query: 180 SYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIV----LADTGETQVFCSKDFMDFPIP 233
            +  +        +    +    P   +L  EF+       DT           +D   P
Sbjct: 151 GFRSLGLDGFRLEVTSLGDETCRPQYRELLQEFLFGLDLDDDTRRRAALNPLRVLDDKRP 210

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                  +   L   +      +  T   H + L      N R+  RG++      F   
Sbjct: 211 EVRAMTAEAPVLLDHLSDVAKQHFDTVLAHLDALRVPYVINPRM-VRGLDYYTKTTFEFV 269

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +    + +  G  G+   +     G     +   +              SV       + 
Sbjct: 270 HDGLGAQSGIGGGGRYDGLMKQLGGQDLSGIGFGLGVDRTMLALRAEGKSVGESARCDVF 329

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                +  +     +  +L   G  V   + D G + G+    AD  G  + ++ G + +
Sbjct: 330 GVPLSEQAKLTLAVLAGQLRASGVRVDLAYGDRGLK-GAM-RAADRSGARVALVAGDRDI 387

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               V +K   TG +  +S + V++    + 
Sbjct: 388 EAGTVGVKDLGTGEQVSVSTDSVVDDVISKL 418


>gi|150261553|pdb|2Q5I|A Chain A, Crystal Structure Of Apo S581l Glycyl-Trna Synthetase
           Mutant
          Length = 691

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 84/312 (26%), Gaps = 24/312 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 350 TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 409

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 410 RSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICD 469

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 470 ECYITEMEMLLNEKGEFTIETE-GKTFQLTKDMINVKRFQ-KTLYVEEVVPNVIEPSFGL 527

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 528 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELLEALTRH 587

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 588 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISE 647

Query: 434 VINYASHRFSNN 445
           + +      + N
Sbjct: 648 LPSIVQDLANGN 659



 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 91  SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 150

Query: 96  LADRNDK 102
                + 
Sbjct: 151 DVKNGEC 157


>gi|145224391|ref|YP_001135069.1| histidyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
 gi|145216877|gb|ABP46281.1| histidyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
          Length = 420

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 59/395 (14%), Positives = 111/395 (28%), Gaps = 23/395 (5%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            R G  ++ +P  +   L+        D   KEM   ADR ++++   P     +     
Sbjct: 34  RRAGYGDIELPIFEDTALFARGVGESTDVVSKEMYTFADRGERSVTLRPEGTAGVMRAVI 93

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            H      LP         FR E RP+ G  R  +  +         P            
Sbjct: 94  EHGLDRGQLPVKLCYSGPFFRYE-RPQAGRYRQLQ-QVGIEAIGVDDPALDAEVMAVADA 151

Query: 180 SYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGE----TQVFCSKDFMDFPIP 233
            +  +        I    +    P   +L  EF+   D  E             +D   P
Sbjct: 152 GFRSLGLDGFRLEITSLGDDSCRPQYRELLQEFLFKLDLDEETRQRAQLNPLRVLDDKRP 211

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLPENKRVSARGIEVGHIFY--- 289
                  +   +   +      +  T   H + L    +   + V          F    
Sbjct: 212 HVREMTANAPVMLDHLSDAAKEHFDTVLAHLDALSVPYVINPRMVRGLDYYTKTTFEFVH 271

Query: 290 --FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              G +  +     + G   +     +   G G       +   +            A  
Sbjct: 272 DGLGAQSGIGGGGRYDGLMAQLGGRDLSGIGFGLGVDRTLLALRAEGKAAG----ETARV 327

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
            +  + + A  +V       + A+L   G  V        +      AD  G  + ++ G
Sbjct: 328 DVYAVPLGADAKVRLAV---LAAQLRAAGVRVDVAYGDRSLKGAMKGADRSGASIALVAG 384

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + +    V +K   TG + D++ ++V+     R 
Sbjct: 385 DRDLEAGTVGVKSMATGEQVDVASDDVVAEVLSRL 419


>gi|321260376|ref|XP_003194908.1| glycine-tRNA ligase [Cryptococcus gattii WM276]
 gi|317461380|gb|ADV23121.1| Glycine-tRNA ligase, putative [Cryptococcus gattii WM276]
          Length = 699

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 80/289 (27%), Gaps = 20/289 (6%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
            +   +   +              +          E +  AD     +         P+ 
Sbjct: 389 IDPTRLRCRQHMANEMAHYAADCWDFEIQSSYGWIECVGCADRSAYDLTVHSVRTKQPLR 448

Query: 234 S----ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI-- 287
                E     + +      + +   +   + +  E L     +  +     +E G    
Sbjct: 449 VQQRLEQPRTVEKLECTFDAKAFGMKFKKDATMIKETLLGLEKDKLQCIKDELEKGSSNV 508

Query: 288 -------FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
                  +            T      ++    +     G  R++ +V+E ++  +    
Sbjct: 509 KCADGKSYEITPDLIKINPITVT-EHMREFIPNVIEPSFGIGRILYSVLEHTYWAREQDA 567

Query: 341 PDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
              V      +  IK      + D   R    ++   + K G     DD    IG ++A 
Sbjct: 568 ARGVLSLPTVVAPIKCLIVSISQDAQLRSKIHEVSREMRKRGIASRVDDSSATIGKKYAR 627

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            D LG P    V    + +  + ++ R +  +    +E+VI+       
Sbjct: 628 NDELGTPFGCTVDFATIQNGTMTLRERDSTAQLIGPIEDVISVVDQLVK 676



 Score = 45.9 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 25  LMLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSA 77
           L+ R               G+Y + P G     N+    R+        +E+    +  +
Sbjct: 62  LLARRFFFAPSFEIYGGVAGLYDYGPTGSALQANILDAWRKHYIIEEDMLELDTTIMTLS 121

Query: 78  DLWVESGRYDSYGKEMLRLADRND 101
           D+   SG  D +   M++     +
Sbjct: 122 DVLKTSGHVDKFADWMVKDVKNGE 145


>gi|261334969|emb|CBH17963.1| glycyl-tRNA synthetase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 624

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 96/300 (32%), Gaps = 27/300 (9%)

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF---- 227
            +    +V + +              ++  +      E + +AD     +          
Sbjct: 311 EAVGARYVRFRQHLRNEMAHYAQDCWDAELLTSYGWVECVGVADRSAYDLTQHSGATKKD 370

Query: 228 ----MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                +F  P         +   +I + +        +  N    D   E  +  + G  
Sbjct: 371 LCAREEFAEPRTERQLQRKLQKGAIGKAFGRNAGDVMEYLNTAPDDVCVELSKKLSGGGS 430

Query: 284 VGHIFYFG---TKYSLPMSATFKGAD--GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           V      G   +  S  +   +K     G+     +     G  R++ A++E S+  +  
Sbjct: 431 VDITTDRGFTASITSNMVQFEYKDVKVTGRSFIPSVIEPSFGVGRILYALLEQSYWVRRD 490

Query: 339 IWPDSVA-----------PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
               +             P K+++  +    ++ R   E+I  R+   G     DD G  
Sbjct: 491 ESAKNEKRAVFGLRPLIAPQKVAVFPLLMKPELIRTV-EEIKERMLLHGISTRTDDSGAS 549

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           IG ++A  D LG P  V    +  +D  V ++ R +  +  +  E+V +  +      RP
Sbjct: 550 IGKKYARVDELGVPFCVTCDME--NDGCVTLRERDSAQQVRIPKEKVADIVAEMCRPLRP 607



 Score = 41.3 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAI-EMSVPTLQSADLWVESGRYDSYGKEML 94
           S G+Y   P       N+ A  R+      ++ E+    L   +++V SG    +   M+
Sbjct: 37  SAGLYDMGPPLCAMKANLLAHWRQHFVLAESMCEVDTTCLTPQEVFVTSGHVTRFNDVMV 96

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           R     +         E   T +  S + S + 
Sbjct: 97  RDTVTGECIRADKFLEEYCETQLRDSQLSSEQR 129


>gi|253699796|ref|YP_003020985.1| histidyl-tRNA synthetase [Geobacter sp. M21]
 gi|251774646|gb|ACT17227.1| histidyl-tRNA synthetase [Geobacter sp. M21]
          Length = 416

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/399 (13%), Positives = 116/399 (29%), Gaps = 13/399 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              + A  R      G  E+ +P L+  +L+  S     D   KEM    D+ +  +   
Sbjct: 20  WQYIEATARRVFELYGLSEIRIPILEKTELFCRSIGDATDIVEKEMYSFVDKGENKVTMR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  H     +     Y +   FR E   +    R R+F    A    +  
Sbjct: 80  PEGTASVMRAYVEHKMHALDPVARLYYMGPMFRYERPQKG---RYRQFHQIGAEITGVAA 136

Query: 168 EGSKHSYNKMFVSY---LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
                    M   +   L +       +        P+  D   +F++       +  C 
Sbjct: 137 PSVDAQVLTMLTHFFNELGLTEPTLQINSLGCPCCRPLYRDALKKFLLDRIESLCED-CK 195

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--ENKRVSARGI 282
           + +   P+ + +                          H ++    L          + +
Sbjct: 196 RRYESNPLRALDCKSAGCQEATKGAPSMLDYLCGECGAHFDQTRKYLELAGTPYAIDKRM 255

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
             G  +Y  T + +  +     +         G         +  +  +    +  +   
Sbjct: 256 VRGLDYYTRTTFEMVTTLLGAQSAVAAGGRYDGLIAEIGGPQIPGIGFAMGVERVALLLA 315

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
                +   + I A  +       ++ + L + G  V  D  G+ + SQ   AD      
Sbjct: 316 EKEFSRRPDLFIAAMGEEAHAEAFRLMSALQRGGAAVEIDYEGKSLKSQMRRADKFNSRF 375

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSL--EEVINYAS 439
            +I+G   +S     +K    G + ++ L  + +++   
Sbjct: 376 TLIIGGDELSRGTAPLKDMDGGTQSEVPLSADAILSALK 414


>gi|171185885|ref|YP_001794804.1| glycyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
 gi|170935097|gb|ACB40358.1| glycyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
          Length = 583

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP----DSVAPFKISLINIKAHDQVCRDAC 365
               +     G  R+   V+E +   +           VAP    ++ I    +   +  
Sbjct: 434 FIPHVVEPSFGLDRIFYVVLEHAVTEEDGRRYLRLPPDVAPVAACILPIVKKSEYV-EIG 492

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           +++  RL++ G  V ++D    IGS++A+ D +G PL V +  K  ++  V ++ R T  
Sbjct: 493 KRLARRLAQEGFYVLYED-DGTIGSRYALCDEIGTPLAVTIDEKTPAEGTVTVRDRDTRR 551

Query: 426 REDMSLEEVINYAS 439
           +  +  E+V  + +
Sbjct: 552 QVRVKTEQVQAFVA 565



 Score = 54.0 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIE----MSVPTLQSADLWVESGRYDSYGKEM 93
           G Y + PLG +   N+    R         E    +  P +    ++  SG  D +   +
Sbjct: 29  GFYDYGPLGVQIRRNIVEKWRRVFV-LPYQETIVEVETPVVMPEPVFKASGHLDHFTDYI 87

Query: 94  LRLADRNDKAMIYGPTHEE 112
           +       +        EE
Sbjct: 88  VACTKC-GRKYRADHLVEE 105


>gi|145295768|ref|YP_001138589.1| histidyl-tRNA synthetase [Corynebacterium glutamicum R]
 gi|140845688|dbj|BAF54687.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 429

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 57/423 (13%), Positives = 129/423 (30%), Gaps = 31/423 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G+  + P    A   V     ++ ++ G   + +P  +   L+        D   KEM  
Sbjct: 19  GVPDYAPPKSAAFLAVRDAFVDQAHKAGFEHIELPIFEDTGLFARGVGESTDVVSKEMYT 78

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR ++++   P     +      H      LP         FR E RP+ G  R  + 
Sbjct: 79  FADRGERSVTLRPEGTAGVMRAVIEHSLDRGQLPVKLNYAGPFFRYE-RPQAGRYRQLQ- 136

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVL 213
            +         P            SY  +  +     +    +    P       +F+  
Sbjct: 137 QVGVEAIGVDDPALDAEIIALADRSYRSLGLKDFRLELTSLGDRHCRPEYRQKLQDFLFA 196

Query: 214 ADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
               E      ++   +   D     +    D  + L+ +  +    +   + + ++   
Sbjct: 197 LPLDEETRKRAEINPLRVLDDKRPEVQEMTADAPLMLDHLDAECREHFETVTGLLDDMGV 256

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGK--DHYVQMGSYGIGA 321
             +   + V          F       G +  +     + G   +     +    YG+G 
Sbjct: 257 PYVINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQDLSGIGYGLGV 316

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF- 380
            R + A+              +     +  + +    +        I  +L   G     
Sbjct: 317 DRTMLALEAEGVTVG------AERRVDVYGVPLGKDAKKALA---GIVNKLRAAGISTDM 367

Query: 381 -WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            + D G + G+    AD       +++G + + ++ + +K      + D++L+EV+ +  
Sbjct: 368 SYGDRGLK-GAM-KGADRSNALYTLVLGEQELENNTIAVKDMRAHEQHDVALDEVVAFLQ 425

Query: 440 HRF 442
            + 
Sbjct: 426 GKL 428


>gi|258508557|ref|YP_003171308.1| histidyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|257148484|emb|CAR87457.1| Histidyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|259649864|dbj|BAI42026.1| histidyl-tRNA synthetase [Lactobacillus rhamnosus GG]
          Length = 427

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 63/406 (15%), Positives = 119/406 (29%), Gaps = 22/406 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V A+ R+   +    E+  P  ++ D++  S     D   KEM    D+ D+ M   
Sbjct: 20  WQQVEAVARKIFAQYQYREIRTPIFENVDVFSRSVGDTSDIVTKEMYTFEDKGDRMMALR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P+  Y +   FR E        R R+F      +F  
Sbjct: 80  PEGTAGVVRAYVENKLYGPEYAKPYKVYYMGPMFRYERPQSG---RQRQFHQIGVEAFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGET 219
                      +    L       LK +       P      H  +V        +  E 
Sbjct: 137 DSPVLDAETLALAKQLLEALGAKHLKFVINSLGD-PATRKAFHAALVDYLTPFKDELSED 195

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKR 276
                       + S++    +I++    +  +  P A       + L   L    E   
Sbjct: 196 SKVRLVKNPLRILDSKDKHDQEIVADAPSILDYLTPEAQQHFDRVKSLLTGLGIEFEVDA 255

Query: 277 VSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
              RG++     IF   +   +          G  +   +    +G             +
Sbjct: 256 TMVRGLDYYNHTIFEVMSDDKVFGGGYTTILAGGRYNGLVEE--LGGPETPGIGFAMGVE 313

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
              ++      P +     +   DQ       ++   L + G     D MG +   QF  
Sbjct: 314 RLMLLMQGDQQPVQPDAYIVTI-DQGADQEALQMLTALRQQGFTGEMDYMGRKAKGQFKA 372

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           A+     L + +G        V++K+  TG ++     +V+   S 
Sbjct: 373 ANKANAKLVLTIGESEREAGTVQVKNMATGQQKAFPQADVLADFSK 418


>gi|199599331|ref|ZP_03212729.1| Histidyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|229552367|ref|ZP_04441092.1| histidine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|258539738|ref|YP_003174237.1| histidyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
 gi|199589770|gb|EDY97878.1| Histidyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|229314269|gb|EEN80242.1| histidine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|257151414|emb|CAR90386.1| Histidyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
          Length = 427

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 63/406 (15%), Positives = 119/406 (29%), Gaps = 22/406 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V A+ R+   +    E+  P  ++ D++  S     D   KEM    D+ D+ M   
Sbjct: 20  WQQVEAVARKIFAQYQYREIRTPIFENVDVFSRSAGDTSDIVTKEMYTFEDKGDRMMALR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P+  Y +   FR E        R R+F      +F  
Sbjct: 80  PEGTAGVVRAYVENKLYGPEYAKPYKVYYMGPMFRYERPQSG---RQRQFHQIGVEAFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGET 219
                      +    L       LK +       P      H  +V        +  E 
Sbjct: 137 DSPVLDAETLALAKQLLEALGAKHLKFVINSLGD-PATRKAFHAALVDYLTPFKDELSED 195

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKR 276
                       + S++    +I++    +  +  P A       + L   L    E   
Sbjct: 196 SKVRLVKNPLRILDSKDKHDQEIVADAPSILDYLTPEAQQHFDRVKSLLTGLGIEFEVDA 255

Query: 277 VSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
              RG++     IF   +   +          G  +   +    +G             +
Sbjct: 256 TMVRGLDYYNHTIFEVMSDDKVFGGGYTTILAGGRYNGLVEE--LGGPETPGIGFAMGVE 313

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
              ++      P +     +   DQ       ++   L + G     D MG +   QF  
Sbjct: 314 RLMLLMQGDQQPVQPDAYIVTI-DQGADQEALQMLTALRQQGFTGEMDYMGRKAKGQFKA 372

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           A+     L + +G        V++K+  TG ++     +V+   S 
Sbjct: 373 ANKANAKLVLTIGESEREAGTVQVKNMATGQQKAFPQADVLADFSK 418


>gi|296125535|ref|YP_003632787.1| histidyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
 gi|296017351|gb|ADG70588.1| histidyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
          Length = 415

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 55/401 (13%), Positives = 119/401 (29%), Gaps = 17/401 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
           L+ + + I++     G   +  P  +  DL+        D  GKEM    DR  +++   
Sbjct: 21  LEFIESKIKDIVKLYGYGRIRTPLFEYTDLFTRGIGEGTDIVGKEMFTFEDRGGRSLTLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDLT 166
           P     +   +  +           + +   +R E   +    R REF           +
Sbjct: 81  PEGTASVARAYVENSMQNEFAINKLFYLGTMYRAERPQKG---RYREFNQFGVECIGGTS 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCS 224
           P                         I     S   P   +   E  + +   E    C 
Sbjct: 138 PLIDAEIILLNINVLKEFGIDNVNLLINTVGCSKCKPSYNNALKE-AIGSRKDELCETCQ 196

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR------VS 278
           K +    +   +   +        + ++          H +KL D L    +      + 
Sbjct: 197 KRYEGNILRILDCKNEKCKETIKDIPKFYDYVCDECKEHFDKLCDELTRIGQNFTVDHML 256

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RG++      F  + +  + A      G  +   +G +  G                 +
Sbjct: 257 VRGLDYYTKTAFEVQ-TNALGAQSAILGGGRYDNLIGLFNNGKDVPAVGSAMGIERLLLV 315

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +   +        + I A  +   +   K+   L        +D   + + SQF  A+  
Sbjct: 316 LESQNNIITDRLDVFIVAFKETENNV-LKVMQTLRANNISCDYDFACKSVKSQFKSANKR 374

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
                +++G   +     ++K+  TG  +++SL ++ +   
Sbjct: 375 NAKYALVLGEDELKREMCKLKNMDTGEEKEVSLNDIHSNIK 415


>gi|226294349|gb|EEH49769.1| glycyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 656

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
            + +++   +     G  R++A ++E  +  +       V  F   +   K      +++
Sbjct: 491 ENIREYTPNVIEPSFGIGRILACLMEHVYWSRPDDEARGVLSFPPIVAPTKVLLVPLSNN 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +    ++  +L ++G     DD    IG ++A  D LG P  + V  + V D+   +
Sbjct: 551 PSFQPLVHRLTLKLRRLGVSNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTL 610

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +   S EE+         
Sbjct: 611 RERDTTKQVRASEEEICKAVKSLVE 635



 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     NV  + R+        +E+    L   D+   SG  D +   M +
Sbjct: 38 SGLYDYGPPGCALQANVVDLWRKHFVLEEDMLEVDCTMLTPHDVLKTSGHVDKFADWMCK 97


>gi|115397539|ref|XP_001214361.1| threonyl-tRNA synthetase, mitochondrial precursor [Aspergillus
           terreus NIH2624]
 gi|114192552|gb|EAU34252.1| threonyl-tRNA synthetase, mitochondrial precursor [Aspergillus
           terreus NIH2624]
          Length = 380

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 102/340 (30%), Gaps = 49/340 (14%)

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKD 159
           D++    P +      +F+S   SYR LP  +       R+E+     G+ R R F   D
Sbjct: 11  DESYGLKPMNCPGHCLLFKSQNHSYRELPIRYADFSPLHRNEVSGSLSGLTRVRRFHQDD 70

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            + F    +               +    GL    +   + P                E 
Sbjct: 71  GHIFCRPQQIKGE-IASALGFVDMVMTTFGLGPYRLVLSTRP----------------EK 113

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
               S    D          D      ++ E   A Y    D+   +L D   +  ++S 
Sbjct: 114 DFIGSLALWDSAEAQLREALDSTGREWAMNEGDGAFYGPKIDI---QLQDQTGKYHQLST 170

Query: 280 RGIEVGHI--FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             +++     F    + +           G+   V +     G++    A++    +   
Sbjct: 171 IQLDMNLPQRFGLEYQVAEGEEDYNPATPGRATPVLVHRANFGSLERFLALLI---EQYA 227

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF----------------- 380
             WP  ++P +  ++ +   D+      ++    +S  G                     
Sbjct: 228 GRWPFWLSPRQGIILTVN-QDEAVVQQAQEAAGMIS--GFRALRPGDGTPTPLSSVDSTF 284

Query: 381 ---WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
               D     +G +   A  + + L  I+G K V+ S++ 
Sbjct: 285 LIDVDTSSTTLGKKIQRAKQMKYNLIFILGPKDVAQSRIT 324


>gi|319775491|ref|YP_004137979.1| Histidyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|319897897|ref|YP_004136094.1| histidyl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|329122470|ref|ZP_08251056.1| histidine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
 gi|317433403|emb|CBY81783.1| Histidyl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|317450082|emb|CBY86296.1| Histidyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|327473224|gb|EGF18645.1| histidine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
          Length = 418

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 65/395 (16%), Positives = 115/395 (29%), Gaps = 12/395 (3%)

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHE 111
             II E   + G  ++  P +++ +L++ S     D   KEM    D  +K  +      
Sbjct: 26  ERIIIEWMKKYGYEQIRTPIIENTNLFIRSIGEATDIVEKEMYSFVDSLNKDKLTLRPEG 85

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLTP 167
            V             N     + +   FR E       R       E L  +    D   
Sbjct: 86  TVACLRACLENNLLYNSTQRLWYMGPMFRHEKPQKGRYRQFTQVGIEALGLEGPDIDAEM 145

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                                 L ++  R +   I      + I + D    +   S   
Sbjct: 146 ITMTKDLWNQLGFKNIELQVNTLGTVAERVKYRNILIKYLEDNIDVLDEDGRRRLYSNPL 205

Query: 228 --MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
             +D    S     ++   L   + + +  +  T     EKL  S  EN R+        
Sbjct: 206 RVLDSKNKSMQDICNNAPKLIEYLGKDSLCHYYTWLNFLEKLGISYVENTRLVRGLDYYN 265

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
           +  +    Y+     TF      +  ++       A    A  +E   D           
Sbjct: 266 NSVFEWVSYANESPLTFCAGGRYNGLMEELGGESKAGIGFAMGVERVLDMLDTKVIPENN 325

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
                +      D+        I  +L  +G +V  D     I SQ   AD       +I
Sbjct: 326 NLIYIVHFGNNTDE----YGLLIAQKLRNIGFNVKQDFEHSSIKSQLKRADKYNARFSII 381

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +G   V  +KV++K   +     + L  +I++   
Sbjct: 382 IGENEVYLNKVKVKEMKSRNEVLIDLNNLIDFFIK 416


>gi|493066|gb|AAA86443.1| glycyl-tRNA synthetase [Homo sapiens]
          Length = 685

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 83/311 (26%), Gaps = 22/311 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 350 TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 409

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                + C       P+ +E    +         E              + + + L    
Sbjct: 410 RSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICD 469

Query: 276 RVSARGIEV-------------GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                 IE+             G  F              K    ++    +     G  
Sbjct: 470 ECYITEIEMLLNEKGEFTIETEGKTFQLTKDMINVKRFQ-KTLYVEEVVPNVIEPSFGLG 528

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVG 376
           R++  V E +   +      +   F   +   K      + +Q      +++   L++ G
Sbjct: 529 RIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHG 588

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEV 434
                DD    IG ++A  D +G    V +    V+       ++ R +  +    + E+
Sbjct: 589 VSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISEL 648

Query: 435 INYASHRFSNN 445
            +      + N
Sbjct: 649 PSIVQDLANGN 659



 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 91  SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 150

Query: 96  LADRNDK 102
                + 
Sbjct: 151 DVKNGEC 157


>gi|296808933|ref|XP_002844805.1| glycyl-tRNA synthetase 1 [Arthroderma otae CBS 113480]
 gi|238844288|gb|EEQ33950.1| glycyl-tRNA synthetase 1 [Arthroderma otae CBS 113480]
          Length = 654

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 96/287 (33%), Gaps = 27/287 (9%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     +   K+    P+    T  +
Sbjct: 350 WRQHMQNEMAHYATDCWDAELFTSYGWIECVGCADRSAYDLTVHKNKTGAPLVVRQTRAE 409

Query: 241 DIISLNSIVEQWTAPYAA----------------TSDVHNEKLFDSLPENK-RVSARGIE 283
            +     +V+     +                  T DV  +  FD     K  ++  G+ 
Sbjct: 410 PLRIEEWLVDIDKKKFGPRFKKDSKTVEAAIEALTQDVREKLSFDLEKNGKIEIAVEGVG 469

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII---- 339
            G +        +         + +++   +     G  R++  ++E ++  +       
Sbjct: 470 EGTVEIGKDLVQIEKRTRV--ENVREYTPNVIEPSFGIGRILYCLMEHAYWSRPDDEARG 527

Query: 340 ---WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
              +P +VAP K+ L+ +  H    +   +++  +L ++G     DD    IG +++  D
Sbjct: 528 VLSFPPAVAPTKVLLVPLSTH-ASFQPLIQRLTLKLRRLGVSNRVDDSSASIGKRYSRND 586

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            LG P  +    + V D+   ++ R T  +   S +E+ N       
Sbjct: 587 ELGTPFGITADFQSVKDNTFTLRDRDTTKQVRASEDEICNAIKSLVD 633



 Score = 51.3 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     NV  + R+        +E+    L   D+   SG  D +   M +
Sbjct: 36 SGLYDYGPPGCALQANVVDLWRKHFVLEEDMLEVDTSMLTPHDVLKTSGHVDKFADWMCK 95


>gi|325524775|gb|EGD02749.1| histidyl-tRNA synthetase [Burkholderia sp. TJI49]
          Length = 446

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 59/431 (13%), Positives = 106/431 (24%), Gaps = 39/431 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FTDALNGENLTMRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 TGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-------- 265
                +     +     P+   +T    +  +     +        S  H E        
Sbjct: 193 QFVDVLDEDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGDESRAHFEGLQRLLLA 252

Query: 266 -----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                K+   L          +        G + ++     +     +       + G  
Sbjct: 253 NNIPFKINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWA 312

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                   +    D         V              +  R+       RL   G DV 
Sbjct: 313 MGIERILELLKEEDLAPEQEGVDVYVVHQG--------EAAREQAFIAAERLRDTGLDVI 364

Query: 381 W----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGI------REDM 429
           +    D       SQ   AD  G    VI G + V++  V +K  R  G       ++ +
Sbjct: 365 FHCSADGGPASFKSQMKRADASGAAFAVIFGEEEVANGTVGVKALRGAGEEGEKNVQQTV 424

Query: 430 SLEEVINYASH 440
            +E +  +  +
Sbjct: 425 PVESLTEFLIN 435


>gi|116333382|ref|YP_794909.1| histidyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
 gi|122269931|sp|Q03SE4|SYH_LACBA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|116098729|gb|ABJ63878.1| histidyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
          Length = 431

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 60/423 (14%), Positives = 126/423 (29%), Gaps = 18/423 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP   +    V A  R+        E+  P  ++ +++  +     D   KEM  
Sbjct: 8   GTADILPGDSQTWQFVEATARQLFANYRFEEIRTPMFENFEVFSRTSGDTSDIVTKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   F  +         P+  Y +   FR E        R R
Sbjct: 68  FKDKGDRHLSLRPEGTAGVVRAFVENKLYGPETQKPYKVYYMGPMFRYERPQSG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEF 210
           +F      +F             + ++ L       L+         E+         +F
Sbjct: 125 QFHQIGVEAFGSDAPELDVEVIALGMNLLGKLGLTHLRLAVNTLGDQETRTAYRQALIDF 184

Query: 211 I--VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           +     +  E             + S++    ++++    +  +  P A       +   
Sbjct: 185 LEPHFDELSEDSKVRLHKNPLRVLDSKDKHDQELVADAPSILDFLTPTATAHFDRVKASL 244

Query: 269 DSLP---ENKRVSARGIEV--GHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           D+L    +      RG++     IF       +L    T   A G+ + +     G    
Sbjct: 245 DALGIDYDVDATMVRGLDYYNHTIFEIMADSPALGEGYTTVLAGGRYNGLVEELGGPEMP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   +              ++       + +         A  KI   + + G     D
Sbjct: 305 GVGFGLGVERLVLLMQAEQVAIPDNHPLDVYVVGIGDQTSLATLKIVQAIRQSGLTADRD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +  +  +QF  A+ L     + +G + ++D    +K   TG    + L ++     +  
Sbjct: 365 YLDRKPKAQFKTANRLNAAYTLTIGEQELADHTANLKSMATGEEISVPLADIYQDFQNVV 424

Query: 443 SNN 445
           +  
Sbjct: 425 ATK 427


>gi|71414089|ref|XP_809159.1| glycyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70873498|gb|EAN87308.1| glycyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 623

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 86/298 (28%), Gaps = 24/298 (8%)

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF---- 227
            +    F+ + +              ++  +      E + +AD     +          
Sbjct: 311 EAVGLRFLRFRQHQRDEMAHYAQDCWDAELLTSYGWVECVGIADRSAYDLTQHSAASKKD 370

Query: 228 ----MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                +F  P         +   +I + +        +  N     +        A G  
Sbjct: 371 LFAREEFAEPRIERQLQRKLQKGAIGKAFGKNAGEVMEYLNTAPEATCVALGEKLASGSV 430

Query: 284 VGHIFYFGTKYSLPMSATFKGAD----GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
                   T    P    F+  +    G+++   +     G  R++ A++E S+  +   
Sbjct: 431 EITTANGFTATIKPEMVQFEFKEVKVTGRNYIPSVIEPSFGVGRILYALLEQSYWVRRDE 490

Query: 340 WPDSVAPFKISLINIKAH----------DQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              +      S+  + A                   E+I   +   G     DD G  IG
Sbjct: 491 SAKNEKRAVFSMRPVIAPQKVAVLPLLVKPELLRVVEEIRGDMVLRGISTRTDDSGASIG 550

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            ++A  D LG P  V    +   D  V ++ R +  +  +  E V +  +      RP
Sbjct: 551 KKYARVDELGIPFCVTCDFET--DGCVTLRERDSARQVRIPREAVADVVAELSRPLRP 606



 Score = 44.3 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           S G+Y   P       N+ +  R+         E+   +L   +++  SG    +   M+
Sbjct: 37  SAGLYDLGPPLCAMKANLLSYWRQHFVLEENMCEVDTTSLTPEEVFKASGHVVRFNDAMV 96

Query: 95  RLADRNDK 102
           R     + 
Sbjct: 97  RDTVTGEC 104


>gi|325179649|emb|CCA14047.1| glycyltRNA synthetase putative [Albugo laibachii Nc14]
          Length = 687

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/292 (11%), Positives = 80/292 (27%), Gaps = 22/292 (7%)

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
              V + +              +          E    AD     +          +   
Sbjct: 379 MERVRFRQHLDTEMSHYASDCWDLEVHLVSGWVECAGHADRSCYDLTVHSKKSKVELVGT 438

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE----------------NKRVSA 279
           +   +    L   ++        T       + ++L E                    + 
Sbjct: 439 HRYPEPEKRLKVEIKSNKGLLGRTFKSDAAYVNEALEELQADMDKALAFEQKLCTHGKAI 498

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
             ++     +  T+  + +         + ++  +     G  R++ AV E S   +   
Sbjct: 499 LELKCAEKQFTVTREMIQIKLVEVTVREEKYFPSVIEPSFGIGRILTAVFEHSFSIREGD 558

Query: 340 WPDSVAPFKISLINIKAH------DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
               V  FK  +  IK         +       ++ +  ++       D     IG ++A
Sbjct: 559 AKRGVMAFKPCIAPIKVSVLPLSTQESLHAVAHQLESVFAQHHIVCRVDTSSVAIGRKYA 618

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            AD LG P  V +  +  +D  V ++ R +  +  + + +V+          
Sbjct: 619 RADELGIPFNVTIDFETATDEAVTLRERDSCQQVRLPISDVVWRLKQLIDEK 670



 Score = 41.6 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 37/144 (25%), Gaps = 5/144 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQ---NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           G Y + P       N   I R      +R   +E+    L    +   SG  D +   M+
Sbjct: 100 GFYDFGPPACALKANFLRIWRSHFVFEDRL--LEVECTNLMPEIVLKTSGHVDRFTDLMV 157

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           +     +         + V   I ++   S         +  L           V++  +
Sbjct: 158 KCTKSGECYRADKLVEDHVHQLIEKNATMSVEEQEKHRLKATLAESYTPEELHAVIQEYQ 217

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMF 178
                  +    P      +    
Sbjct: 218 IKAPGTGADISDPIPFNLMFQCQI 241


>gi|163787141|ref|ZP_02181588.1| glycyl-tRNA synthetase [Flavobacteriales bacterium ALC-1]
 gi|159877029|gb|EDP71086.1| glycyl-tRNA synthetase [Flavobacteriales bacterium ALC-1]
          Length = 512

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 62/506 (12%), Positives = 133/506 (26%), Gaps = 91/506 (17%)

Query: 19  EIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNRT--GAIEMS 70
           ++ SH      G + Q S        +Y +   G +   N+     +   +     + + 
Sbjct: 9   KVISHAKE--YGYVFQSSEIYDGLSAVYDYAQNGAELKKNIRDYWWKAMVQMHDNIVGID 66

Query: 71  VPTLQSADLWVESGRYDSYGK---EMLRLADRNDKAMIYGPTHEEVMTDIFR-------- 119
                    W  SG  D++     +      R    ++     E+++  I +        
Sbjct: 67  AAIFMHPTTWKASGHVDAFNDPLIDNKDSKKRYRADVLVEDFREKILQKINKDVAKAKKR 126

Query: 120 -------SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
                  +  +S         +       EL           F         + P     
Sbjct: 127 FGDAFDENEFRSTNGNVLRRQKQIDDITVELTRVQEESDLEGFKQLILDLGIVCPVSGSK 186

Query: 173 SYNKMFVSYLRIFHRLGLKS------------------------------------IPMR 196
           ++  +    L    +LG  +                                       +
Sbjct: 187 NWTDVKQFNLMFGTKLGASAESAMDLYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQTGK 246

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFC--------SKDFMDFPIPSENTDFDDIISLNSI 248
           A    I        +   +  E Q F            + D  +    +      +    
Sbjct: 247 AFRNEIVARQFIFRMREFEQMEMQFFIKPGTQKEWFDYWKDTRLKWHKSLGLGEENYRFH 306

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK--YSLPMSATFKGAD 306
             +  A YA  +            E + + +R       F       +S      F   D
Sbjct: 307 DHEKLAHYADAATDIEFNFPFGFKELEGIHSR-----TDFDLKQHEEFSGKKLQYFDHED 361

Query: 307 GKDHYVQMGSYGIGAMRVVAA---------VIESSHDGKGIIWPDSVAPFKISLINIKAH 357
              +   +    IG  R+  A          +E       +  P  +AP K ++  +   
Sbjct: 362 NASYTPYVLETSIGLDRMFLAVFSNSLVEENLEDGKTRTVLKLPAVLAPAKAAIFPLVKK 421

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D    +  ++I   L     ++ +++    +G ++   D  G P  + V    + D+ V 
Sbjct: 422 D-GLPEVAKQIVEDLK-WDFNIIYEEKD-TVGKRYRRQDAAGTPFCITVDHDTLKDNTVT 478

Query: 418 IKHRLTGIREDMSLEEVINYASHRFS 443
           I+HR T  +  + +E++         
Sbjct: 479 IRHRDTMDQRRVRIEDLKTIIKAEVD 504


>gi|53802991|ref|YP_115282.1| histidyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
 gi|81680831|sp|Q603B8|SYH_METCA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|53756752|gb|AAU91043.1| histidyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
          Length = 422

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 58/421 (13%), Positives = 120/421 (28%), Gaps = 30/421 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G++  LP        V   IR      G  E+ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GMHDILPDMTPRWQQVEHQIRSVMANYGYREIRLPIVEKTELFKRSIGEVTDIVEKEMYV 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE- 154
             DRN  ++   P            H   +       +     FR E   +    +  + 
Sbjct: 70  FEDRNGDSLTLRPEGTAGCLRACLEHGLLHNQ-THRLWYAGPMFRHERPQKGRYRQFHQV 128

Query: 155 ----FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
               F M            S+  + ++ V++        L +   R     I  D   E 
Sbjct: 129 GVEVFGMPGPDIDAELIFLSRRLWQRLGVAHKLRLELNSLGTPDERLAYRQILVDYLREN 188

Query: 211 IV--LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKL 267
                AD+           +D   P+          L   +   + A +   +++ +   
Sbjct: 189 YDALDADSARRLETNPLRILDSKNPAMKDLLAGAPVLADHLGGASRAHFEGLTELLDAAE 248

Query: 268 FDSLPENKRVSARGIEVGHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              +   + V         +F       GT+ ++     + G   +       + G    
Sbjct: 249 IPYVINPRLVRGLDYYCNTVFEWVTDELGTQGTVCAGGRYDGLVAQLGGRDSSAIGFALG 308

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVF 380
                 +            ++ A     +  I       R     +   L        + 
Sbjct: 309 MERLIELT----------GETFAENAPHIYFITVGTAAERRGAV-LAEMLRDAFPSLRLV 357

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYAS 439
            +  G    +QF  AD       +++G   + D  + +K  R    ++ ++  +++    
Sbjct: 358 VNCGGGSFKNQFKRADKSAAAFALVLGEDEMRDDSISLKPLRSDDAQQTVAQADLVRLIQ 417

Query: 440 H 440
            
Sbjct: 418 S 418


>gi|313760923|gb|ADR79437.1| glycyl-tRNA synthetase-like protein [Liriodendron tulipifera]
          Length = 688

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 74/283 (26%), Gaps = 12/283 (4%)

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--LSHEFIVLADTG 217
                   +         +     +       +  +RA +   G       ++    +  
Sbjct: 393 NEMAHYAADCWDAEIECSYGWIECVGIAD-RSAYDLRAHTEKSGVSLVAHEKYAEPREVE 451

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           +  +  +K  M            + +   +  E      A  S    E    +L +    
Sbjct: 452 QLVIAPAKKEMGLAFKGSQKMVVEALEAMNDAEAMEMKTALESQGQVEFNVCTLGK---- 507

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
               I    +     K                  +    Y +          ++  +   
Sbjct: 508 -TVMITKNMVSISRQKKKEHQRVFTPSVIEPSFGIGRIIYCLFEHSFYMRASKAGDEQLN 566

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +    S+       +      Q   +    I   L+  G     D  G  IG ++A  D 
Sbjct: 567 VFRFPSLVAPIKCTVFPLVQQQQYEEVAILISKSLTAAGISHKIDITGTSIGKRYARTDE 626

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           LG PL + V     S S V I+ R +  +  +S+ EV +    
Sbjct: 627 LGVPLAITVD----STSSVTIRERDSKDQIRVSINEVASVVKE 665



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYD 87
           +  I++   G+Y + P G     NV A  R+        +E+  P +    +   SG  D
Sbjct: 94  SFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVDCPCVTPEVVLKASGHVD 153

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +   M++  ++           ++  
Sbjct: 154 KFTDLMVKD-EKTGTCYRADHLLKDFC 179


>gi|283769649|ref|ZP_06342545.1| histidine--tRNA ligase [Bulleidia extructa W1219]
 gi|283103917|gb|EFC05303.1| histidine--tRNA ligase [Bulleidia extructa W1219]
          Length = 423

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 68/417 (16%), Positives = 117/417 (28%), Gaps = 21/417 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G Y  LP   K    V  +IR+   +    E+  P  +   ++  E+   D   KEM   
Sbjct: 8   GTYDILPQEMKRWHYVEKVIRQITKKYRYQEIRTPYFEETKVFKRENDSSDMVNKEMYTF 67

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            D    +    P     +   F  H       LP   Y +   FR E   +    R R+F
Sbjct: 68  -DMGKDSYTLRPEGTAGVIRSFDQHKLYGSMELPVRLYYLGAMFRHERPQKG---RQRQF 123

Query: 156 LMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIV 212
                      +PE    +    +    ++        I    +  S         E   
Sbjct: 124 TQFGIENIGAKSPELDAETIALGYDLVKQMGISSIKVLINTLGDDESRANYRQALKE-HF 182

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL- 271
                E    C + +   P+   +   D          +        S  +  ++  +L 
Sbjct: 183 QPHLEELCSDCRRRYEQNPLRILDCKIDHDQDCLHKAPRLVDSLNEASREYFSRVLAALD 242

Query: 272 -------PENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                   ++  V         +F    T+      AT       DH+V+       +  
Sbjct: 243 ALGIPYEVDDHLVRGLDYYTHTVFEVVSTRPDSGAQATIFAGGRYDHFVEYYGGPDMSGI 302

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
             A  +E           D           I   D        K+   L   G  V  + 
Sbjct: 303 GFAIGMERLISLASDEGFDFGKDITCDAYVIGLGD--VSLEVLKMAQELRTNGFIVEANL 360

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +   + SQF  AD       +I+G   V + +V +K      +  +  +E+I     
Sbjct: 361 LPRSLKSQFKSADRHEAKYVIILGEDEVKNGRVNVKRTSDKTQVTIVRQELIKQLES 417


>gi|126336783|ref|XP_001373658.1| PREDICTED: similar to Glycyl-tRNA synthetase [Monodelphis
           domestica]
          Length = 692

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 76/290 (26%), Gaps = 24/290 (8%)

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
           K       + + +              ++         E +  AD     + C       
Sbjct: 372 KAGVCAERLRFRQHMDNEMAHYACDCWDAEARTSYGWIEIVGCADRSCYDLTCHSRATKV 431

Query: 231 PIPSENTDFD--------------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           P+ +E    +               I        +    Y A  D       + L   K 
Sbjct: 432 PLVAEKLLREPRTVNVVQFEASKAAIGRTYKKDARLVLDYLAACDEAFVSAMEGLLHEKG 491

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
                 E G  F           +  K    ++    +     G  R++  V E +   +
Sbjct: 492 KFTIETE-GKTFQVTKDMVSVQRSQ-KTLHVEEIVPNVIEPSFGLGRIMYTVFEHTFRVR 549

Query: 337 GIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                 +   F   +   K      + +Q       ++   L++ G     DD    IG 
Sbjct: 550 EGDEQRTFFSFPAIVAPYKCSVLPLSQNQEFAPFVRELSEALTRNGVSHKVDDSSGSIGK 609

Query: 391 QFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYA 438
           ++A  D +G    + +    V+       ++ R +  +    + E+    
Sbjct: 610 RYARTDEIGVAFGITIDFDTVNKTPHTATLRDRDSMRQIRAEISELPKVV 659


>gi|150261552|pdb|2Q5H|A Chain A, Crystal Structure Of Apo-Wildtype Glycyl-Trna Synthetase
          Length = 691

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 84/312 (26%), Gaps = 24/312 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 350 TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 409

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 410 RSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICD 469

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 470 ECYITEMEMLLNEKGEFTIETE-GKTFQLTKDMINVKRFQ-KTLYVEEVVPNVIEPSFGL 527

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 528 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRH 587

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 588 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISE 647

Query: 434 VINYASHRFSNN 445
           + +      + N
Sbjct: 648 LPSIVQDLANGN 659



 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 91  SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 150

Query: 96  LADRNDK 102
                + 
Sbjct: 151 DVKNGEC 157


>gi|600727|gb|AAA57001.1| glycyl-tRNA synthetase [Homo sapiens]
 gi|51105865|gb|EAL24449.1| glycyl-tRNA synthetase [Homo sapiens]
          Length = 685

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 84/312 (26%), Gaps = 24/312 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 350 TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 409

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 410 RSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICD 469

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 470 ECYITEMEMLLNEKGEFTIETE-GKTFQLTKDMINVKRFQ-KTLYVEEVVPNVIEPSFGL 527

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 528 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRH 587

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 588 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISE 647

Query: 434 VINYASHRFSNN 445
           + +      + N
Sbjct: 648 LPSIVQDLANGN 659



 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 91  SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 150

Query: 96  LADRNDK 102
                + 
Sbjct: 151 DVKNGEC 157


>gi|126274168|ref|XP_001387862.1| cyl-tRNA synthase [Scheffersomyces stipitis CBS 6054]
 gi|126213732|gb|EAZ63839.1| cyl-tRNA synthase [Pichia stipitis CBS 6054]
          Length = 661

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 6/142 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              ++    +     G  R++ ++ E  +  +       V      +   K      ++ 
Sbjct: 495 EHIREFTPNVIEPSFGIGRILYSIFEHQYWARPGDADRGVLSLPPLVAPTKVLLVPLSNS 554

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +    K+ A L K       DD    IG ++A  D LG P  + +    + D  V +
Sbjct: 555 ADLQPIVTKVSAYLRKQQIPFKVDDSSASIGKRYARNDELGTPFGITIDFDSIKDESVTL 614

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R +  +   S E+V+     
Sbjct: 615 RERDSTKQVRGSFEDVVAAIKE 636



 Score = 45.1 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     NV    R+        +E+    L   D+   SG  D +   M +
Sbjct: 42  SGLYDYGPPGCAFQANVVDTWRKHFVLEEDMLEVDCTMLTPHDVLKTSGHVDKFADWMCK 101


>gi|88801439|ref|ZP_01116967.1| glycyl-tRNA synthetase [Polaribacter irgensii 23-P]
 gi|88782097|gb|EAR13274.1| glycyl-tRNA synthetase [Polaribacter irgensii 23-P]
          Length = 515

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 83/253 (32%), Gaps = 16/253 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       G TQ    + +    +    +      +         A YA  
Sbjct: 260 FRMREFEQMEMQFFVKPG-TQKEYYEHWKATRLKWHLSLGMGAENYRFHDHDKLAHYADA 318

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     K      E + + +R             +S      F   + + +   +    I
Sbjct: 319 AADIEFKFPFGFKELEGIHSRTDFDLKAHE---AHSGKKLQYFDPEENRSYTPYVVETSI 375

Query: 320 GAMRVVAAV---------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R+  AV         +E+      +  P  +AP+K ++  +   D    +   +I  
Sbjct: 376 GLDRMFLAVFSNSLHEEALENGTTRTVLKLPAVLAPYKAAIFPLVKKD-GLPEVAREIMK 434

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L     +VF+D+    +G ++   D  G P  + V  + + D+ V I+HR T  ++ + 
Sbjct: 435 ELK-WDFNVFYDEKDA-VGKRYRRQDAAGTPFCITVDHESLEDACVTIRHRDTMEQKRVK 492

Query: 431 LEEVINYASHRFS 443
           + E+        +
Sbjct: 493 ISELKGIIEKEVA 505


>gi|149243238|pdb|2PME|A Chain A, The Apo Crystal Structure Of The Glycyl-Trna Synthetase
 gi|256599540|pdb|2ZT5|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
           In Complex With Ap4a (Cocrystallized With Atp)
 gi|256599541|pdb|2ZT6|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
           In Complex With Ampcpp
 gi|256599542|pdb|2ZT7|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
           In Complex With Glycine And Atp
 gi|256599543|pdb|2ZT8|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
           In Complex With Gly-Amp Analog
 gi|256599568|pdb|2ZXF|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
           In Complex With Ap4a (Cocrystallized With Ap4a)
          Length = 693

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 84/312 (26%), Gaps = 24/312 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 350 TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 409

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 410 RSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICD 469

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 470 ECYITEMEMLLNEKGEFTIETE-GKTFQLTKDMINVKRFQ-KTLYVEEVVPNVIEPSFGL 527

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 528 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRH 587

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 588 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISE 647

Query: 434 VINYASHRFSNN 445
           + +      + N
Sbjct: 648 LPSIVQDLANGN 659



 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 91  SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 150

Query: 96  LADRNDK 102
                + 
Sbjct: 151 DVKNGEC 157


>gi|329116293|ref|ZP_08245010.1| histidine--tRNA ligase [Streptococcus parauberis NCFD 2020]
 gi|326906698|gb|EGE53612.1| histidine--tRNA ligase [Streptococcus parauberis NCFD 2020]
          Length = 436

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 59/419 (14%), Positives = 126/419 (30%), Gaps = 25/419 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V  + RE   +    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 24  LPAEAAKWQYVEHVARETFKKYNYGEIRTPMFEHYEVISRSVGDTTDIVSKEMYDFNDKG 83

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
            + +   P     +   +  +         P   Y I+  FR E      + +  +  ++
Sbjct: 84  GRHITLRPEGTAPVVRSYVENKLFAPEVQKPLKMYYIEPMFRYERPQAGRLRQFHQIGVE 143

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
              S +   +    +      + L I +     +      S         +F+      +
Sbjct: 144 CFGSANPAIDVETIAMAYDLFNALGIGNLKLSINSLGNPSSRAAYRQALIDFLTP-QKDK 202

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIIS--------LNSIVEQWTAPYAATSDVHNEKLFDS 270
                 +   + P+   ++   + I         L  + E+  A +    D+ +      
Sbjct: 203 LSKDSQRRLEENPLRVLDSKEKEDIEAVKNAPSILEFLDEESQAHFDGVRDMLDMLGISY 262

Query: 271 LPENKRVSARGIEVGHIFYFGTKY-----SLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
             +   V         IF   T+      ++     + G        +  ++G G     
Sbjct: 263 TIDTNMVRGLDYYNHTIFEVITEIEDSELTVCGGGRYDGLVTYFDGPETAAFGFGLGLER 322

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             +I      K  I         + +  +            ++   + + G     D +G
Sbjct: 323 LLMII----EKLGIELPIEENLDLYMAVLGDG---ANSKALELVQAIRRQGFKAERDYLG 375

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +I +QF  AD+      + +G   V   KV IK+  T    +++ EE+ N  +   + 
Sbjct: 376 RKIKAQFKSADVFKAKAIITLGESEVEAGKVTIKNNQTRQELEVTFEELTNDFAAVLAK 434


>gi|317138097|ref|XP_001816665.2| prolyl-tRNA synthetase [Aspergillus oryzae RIB40]
          Length = 558

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 82/210 (39%), Gaps = 18/210 (8%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-----ADG 307
            A Y   +D+    +   +P   +     IE      FG   S     T +         
Sbjct: 188 NAAYLQDTDISTGVVIAYIPATNQC----IEGAKCHEFGQTLSKAYEITVRDPSATAEPA 243

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRD 363
              +V    + I ++R +  ++ +  D  G++ P  +A  +++++  +A           
Sbjct: 244 ALLHVWQNCWRI-SIRALGVMVATHSDNHGLVLPPRIAETQVAIVAAQASSTDEQLILDT 302

Query: 364 ACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             +++ +RLS  G  V  DD  G  +G +F    + G PL +++G   V++  V I+ R 
Sbjct: 303 ETDRLVSRLSSAGIRVKVDDLEGYSLGWRFNEWIVSGTPLFIVLGPNEVTNQVVTIRRRD 362

Query: 423 ---TGIREDMSLEEVINYASHRFSNNRPVL 449
                 + + ++ E+        +N +  L
Sbjct: 363 LLHAEGKVEAAIPELHTIIPTTLANIQEEL 392


>gi|83764519|dbj|BAE54663.1| unnamed protein product [Aspergillus oryzae]
          Length = 512

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 82/210 (39%), Gaps = 18/210 (8%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-----ADG 307
            A Y   +D+    +   +P   +     IE      FG   S     T +         
Sbjct: 206 NAAYLQDTDISTGVVIAYIPATNQC----IEGAKCHEFGQTLSKAYEITVRDPSATAEPA 261

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRD 363
              +V    + I ++R +  ++ +  D  G++ P  +A  +++++  +A           
Sbjct: 262 ALLHVWQNCWRI-SIRALGVMVATHSDNHGLVLPPRIAETQVAIVAAQASSTDEQLILDT 320

Query: 364 ACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             +++ +RLS  G  V  DD  G  +G +F    + G PL +++G   V++  V I+ R 
Sbjct: 321 ETDRLVSRLSSAGIRVKVDDLEGYSLGWRFNEWIVSGTPLFIVLGPNEVTNQVVTIRRRD 380

Query: 423 ---TGIREDMSLEEVINYASHRFSNNRPVL 449
                 + + ++ E+        +N +  L
Sbjct: 381 LLHAEGKVEAAIPELHTIIPTTLANIQEEL 410


>gi|170733171|ref|YP_001765118.1| histidyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
 gi|206560246|ref|YP_002231010.1| histidyl-tRNA synthetase [Burkholderia cenocepacia J2315]
 gi|229558659|sp|B1JT91|SYH_BURCC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558660|sp|B4EAW8|SYH_BURCJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|169816413|gb|ACA90996.1| histidyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
 gi|198036287|emb|CAR52183.1| histidyl-tRNA synthetase [Burkholderia cenocepacia J2315]
          Length = 446

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 57/431 (13%), Positives = 105/431 (24%), Gaps = 39/431 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FTDALNGENLTMRPENTAAVVRASIEHNMLYDGPKRLWYIGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 TGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-------- 265
                +     +     P+   +T    +  +     +        S  H E        
Sbjct: 193 QFADVLDEDAKRRLYTNPLRVLDTKNPALQDIAQNAPKLIDFLGDESRAHFEGLQRLLLA 252

Query: 266 -----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                K+   L          +        G + ++     +     +       + G  
Sbjct: 253 NNIPFKINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWA 312

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                   +    D         V              +  R+       RL   G DV 
Sbjct: 313 MGIERILELLKEEDLAPEQEGVDVYVVHQG--------ETAREQAFIAAERLRDTGLDVI 364

Query: 381 W----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-------GIREDM 429
           +    D       SQ   AD  G    VI G + V++  V +K            +++ +
Sbjct: 365 FHCSADGAPASFKSQMKRADASGAAFAVIFGEEEVANGTVGVKALRGAGAEGEKNVQQTV 424

Query: 430 SLEEVINYASH 440
            +E +  +  +
Sbjct: 425 PVESLTEFLIN 435


>gi|221133869|ref|ZP_03560174.1| histidyl-tRNA synthetase [Glaciecola sp. HTCC2999]
          Length = 425

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 59/420 (14%), Positives = 123/420 (29%), Gaps = 29/420 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V  I+R    + G  E+ +P ++S +L+  S G   D   KEM    DRN
Sbjct: 15  LPEQSGIWQYVENILRSTVAQYGYQEIRMPIVESTELFKRSIGEVTDIVEKEMYTFDDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P            H   Y       + +   FR E   +    +  +F ++  
Sbjct: 75  GDSLTLRPEGTASAVRAGNQHGLIYNQ-QQRLWYMGPMFRHERPQKGRYRQFHQFGVETY 133

Query: 161 YSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
                  +    S +                 + LG  +     ++  +    +H+  + 
Sbjct: 134 GLAGPDIDAEVISLSARLWRKLGIADKVTLEINSLGSNAARAEYKTLLVEFLEAHKAQLD 193

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDSLP 272
            D+           +D   P       D   L   +++   A ++   +   +       
Sbjct: 194 EDSQRRMYTNPLRVLDSKNPEVQAILSDAPKLQDHLDEASAAHFSQLCERLAQLGISYRV 253

Query: 273 ENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVV 325
             K V         +F       G + ++     + G              + +G  R+V
Sbjct: 254 NPKLVRGLDYYNATVFEWVTDTLGAQGTICAGGRYDGLVEQLGGKAAPAVGFALGLERLV 313

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-VGCDVFWDDM 384
                            +        + + A  +      +     L       V     
Sbjct: 314 ---------LMLTELGLTDDVPAAVDVYVTALGEDAVLYAQTTAEMLRDTTDLRVQMHCG 364

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRFS 443
           G  +  Q   AD     + +++G    SD +V IK+      +  ++L ++ +  +  F+
Sbjct: 365 GGNMKKQLKRADSAQARVALLIGGTEASDQQVTIKYLGGDADQTTVALAQLSSTLNAFFN 424


>gi|116628637|ref|YP_821256.1| histidyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
 gi|122266769|sp|Q03IB2|SYH_STRTD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|116101914|gb|ABJ67060.1| histidyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
 gi|312279288|gb|ADQ63945.1| Histidyl-tRNA synthetase [Streptococcus thermophilus ND03]
          Length = 426

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 56/400 (14%), Positives = 111/400 (27%), Gaps = 21/400 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  + RE   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVENVARETFKKYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P   Y I   FR E        R REF       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKVYYIGSMFRYERPQAG---RLREFHQLGVECFGS 136

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA--ESGPIGGDLSHEFIVLA------DT 216
             P     +    +  +  +  +     +      +S         +++         D+
Sbjct: 137 KNPATDVETIAMAYQLFNTLGIKDVTLHLNSLGNTDSRLAYRQALIDYLTPMRESLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    ++  S+ + + E+    +     + +      + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKVAVENAPSILDYLDEESQTHFDEVRAMLDSLNIPYVIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPM-SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            V         IF F T       +    G          G    G    +         
Sbjct: 257 MVRGLDYYNHTIFEFITTIDKSELTICAGGRYDSLVEYFGGPETAGFGFGLGLERLLLVL 316

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
            K  I         + +  + +          ++   +   G     D +G +I +QF  
Sbjct: 317 DKQGIKLPVEESLDVYIAVLGSG---ANGKALELVQSIRYQGFKAERDYLGRKIKAQFKS 373

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           AD       + +G   V    V++K+  T     +S EE+
Sbjct: 374 ADTFKAKTVITLGESEVESGVVKVKNNATREEVTVSFEEL 413


>gi|312867053|ref|ZP_07727264.1| histidine--tRNA ligase [Streptococcus parasanguinis F0405]
 gi|311097535|gb|EFQ55768.1| histidine--tRNA ligase [Streptococcus parasanguinis F0405]
          Length = 427

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 62/410 (15%), Positives = 115/410 (28%), Gaps = 23/410 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGFARKVFARYNYDEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P  FY I   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPSKFYYIGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 165 LTPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             P     +              +     + LG  +         I   L  +  +  D+
Sbjct: 137 SNPATDVETIAMAAQFLKELGIDNVTLHLNTLGSPASRQAYRQALIDYLLPVKDQLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    +   S+ + + E+  A + A   +  +     + +  
Sbjct: 197 QRRLEENPLRVLDSKEKEDKAAVEQAPSILDYLDEESQAHFDAVRRMLEDLGVAYVIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EGNELTV-CAGGRYDGLVEYFGGPATAGFGFGIGVERILL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +         I        +A   +   L   G     D +G ++ +QF  A
Sbjct: 315 VLEKKGIELPIETGLDAYIAVLGDEVNEAALSLVQALRIQGFKAERDYLGRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE----EVINYASHR 441
           D+      + +GS  V   +V +K+  T     ++LE    +  +  +  
Sbjct: 375 DVFAAKALITLGSSEVESGQVTVKNNQTRQEVTVALEKLKKDFPSVLAEL 424


>gi|311275675|ref|XP_003134854.1| PREDICTED: glycyl-tRNA synthetase-like [Sus scrofa]
          Length = 742

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 75/283 (26%), Gaps = 24/283 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 432 FRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKE 491

Query: 241 --------------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                          I        +    Y A  D       + L   K       E G 
Sbjct: 492 PKTVNVVQFEPNKGAIGKAYKKDAKLVMEYLAICDECYITEMEKLLNEKGEFTVETE-GK 550

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            F              K    ++    +     G  R++  V E +   +      +   
Sbjct: 551 TFQLTKDMVNVKRFQ-KTLHVEEVVPSVIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFS 609

Query: 347 FKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           F   +   K      + +Q      +++   L++ G     DD    IG ++A  D +G 
Sbjct: 610 FPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGV 669

Query: 401 PLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHR 441
              + +    V+       ++ R +  +    + E+ +     
Sbjct: 670 AFGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPSVVRDL 712



 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 148 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 207

Query: 96  LADRNDK 102
                + 
Sbjct: 208 DVKNGEC 214


>gi|119897219|ref|YP_932432.1| histidyl-tRNA synthetase [Azoarcus sp. BH72]
 gi|254782319|sp|A1K3Z0|SYH_AZOSB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|119669632|emb|CAL93545.1| Histidine--tRNA ligase [Azoarcus sp. BH72]
          Length = 433

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 53/418 (12%), Positives = 112/418 (26%), Gaps = 26/418 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP   +  ++   I+R+     G   + +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDILPDEAETWEHFEDIVRDWLKSYGYRPIRMPLVEPTPLFKRAIGEVTDIVEKEMYS 69

Query: 96  LADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D  N + +   P            H     + P   Y     FR E   +    +  +
Sbjct: 70  FEDALNGEHLTLRPEGTASCVRAAIQHNLVAGHGPQRLYYHGPMFRHERPQKGRYRQFHQ 129

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             ++         +             L +       +    AE           ++   
Sbjct: 130 IGVEALGFAGPDIDAEHIIMCARLWDDLGLEDVSLEINSLGAAEERAQHRAALIAYLEQH 189

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK-------- 266
                +    +     P+   +T   D+  +     +        S  H +         
Sbjct: 190 RDKLDED-GQRRLYTNPLRILDTKNPDLQPVVEAAPRLADYLGDESRAHFDAVQLFLKDA 248

Query: 267 -----LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                +   L        R +        G + ++     + G               G 
Sbjct: 249 GIPYRINHRLVRGLDYYNRTVFEWVTTRLGAQGTVCAGGRYDGL--VAQLGGKPQPAAGF 306

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
              V  ++    +  G     +   + + L       +  +    +    L   G     
Sbjct: 307 AMGVERLLALWQESGGEPERQAPDVYVVHLG------EAAQRLAFQAAEALRGHGFSAVL 360

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYA 438
              G    SQ   AD  G  + V++G    +  +V +K  R  G ++ ++L  +    
Sbjct: 361 HCGGGSFKSQMKKADGSGASIAVVIGEDEAAAGEVGVKPLRGPGGQQRVTLAALAEAV 418


>gi|52841774|ref|YP_095573.1| histidyl-tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|81680468|sp|Q5ZV96|SYH_LEGPH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|52628885|gb|AAU27626.1| histidyl tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 426

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 59/419 (14%), Positives = 119/419 (28%), Gaps = 16/419 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        +         R G  E+  P +++  L+  + G   D   KEM  
Sbjct: 11  GMNDVLPDSTSIWRFIEQTFINCLVRYGYKEIRFPIVENTQLFKRTIGEITDIVEKEMYT 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D N  ++   P            H   +      +Y     FR E   +    +  +F
Sbjct: 71  FNDLNGDSITLRPEGTAGCVRACIEHGLLHNQQQKLWYL-GPMFRHERPQKGRYRQFNQF 129

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            ++                  ++++            +             +  E++   
Sbjct: 130 GVEALGITGTGIELELISICRRLWIDLGFSQSVQLQVNSLGEINERQKYRSILVEYLRDH 189

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP-- 272
                +    +     P+   ++   D+  L     +        S  H +   + L   
Sbjct: 190 FQILDED-SKRRLDKNPLRVLDSKNPDLQQLIQNAPKLIDVLGDDSREHFQSFCNGLETL 248

Query: 273 ----ENKRVSARGIE-VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                   V  RG++  G   +      L   AT       D  V+            A 
Sbjct: 249 GIPYSINPVLVRGLDYYGQTVFEWVTDQLGSQATICAGGRYDMLVEFLGGAPTPAVGFAL 308

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDDMG 385
            +E        +   + +  K S+  I  +++        +   +       DV  +  G
Sbjct: 309 GLERIFLLMETLNLLNESNNKQSIFIIATNEEAIL-KALVMAESIRNAHPSLDVITNTAG 367

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRFS 443
               SQF  AD  G  L +I+G   ++   V IK   T   +  + + ++  +     +
Sbjct: 368 GGFKSQFKKADKSGARLALILGEDEIAKEYVSIKDLRTEIEQISIPMTKINEFLQDYLA 426


>gi|51209886|ref|YP_063550.1| histidine-tRNA synthetase [Gracilaria tenuistipitata var. liui]
 gi|68052941|sp|Q6B910|SYH_GRATL RecName: Full=Histidyl-tRNA synthetase, chloroplastic; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|50657640|gb|AAT79625.1| histidine tRNA synthetase [Gracilaria tenuistipitata var. liui]
          Length = 420

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 61/423 (14%), Positives = 107/423 (25%), Gaps = 29/423 (6%)

Query: 40  YSWLPL-GQK-ALDNVNAIIREEQNRT-------GAIEMSVPTLQSADLWVES--GRYDS 88
           Y   PL G K  L N         ++           E+  P ++S  L+  S     D 
Sbjct: 4   YFMQPLRGTKDILPNEINYWHHIHDKALTILSLHNYSEIRTPIIESTSLFKRSIGETSDI 63

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             KEM    D+ D+++   P     +   F S+   + N+   +Y     FR E      
Sbjct: 64  INKEMYTFTDQGDRSITLRPEATASIARAFISNKLYHSNIQRLWYL-GPMFRYERPQSG- 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R R+F              +      +    L+               +         
Sbjct: 122 --RQRQFHQLGIECIGSINPMADTEVIHLANQLLKELQVKNYILEINSIGTLEERQSYKL 179

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS----------LNSIVEQWTAPYAA 258
           + +      +  +        +  P    D  ++ +             + ++ T  +  
Sbjct: 180 DLVEYLSQYQQDLDQDSKNRMYSNPLRILDSKNLKTQEILDGAPKLKKYLNKRSTEHFYL 239

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                N          K V          F   T  S     T     G   Y  +    
Sbjct: 240 VCTYLNNLNITYKINYKLVRGLDYYNQTAFEIKT-NSKNSQNTI---CGGGRYDTLIEQL 295

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G                 II    + P +   + I       +    +I   L K    
Sbjct: 296 GGPKTPAVGWAIGIERLLKIIEDKLILPKQKINVYIATQGLAAQKKIWEIIQALEKKNIK 355

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              D        Q   A  LG    +I+G + + D+ V IK     ++        +   
Sbjct: 356 FELDLSNTSFHKQIKKAGKLGAKFCIILGDQEIMDNCVTIKRLDEYVQYTAQYSNFLQEI 415

Query: 439 SHR 441
              
Sbjct: 416 HKL 418


>gi|255716848|ref|XP_002554705.1| KLTH0F11660p [Lachancea thermotolerans]
 gi|238936088|emb|CAR24268.1| KLTH0F11660p [Lachancea thermotolerans]
          Length = 661

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 80/289 (27%), Gaps = 19/289 (6%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                     +         +     +                 +  + + E +V+    
Sbjct: 363 MANEMAHYAADCWDAELKTSYGWIECVGCADRSAY------DLTVHANKTKEKLVVRQKL 416

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E  V  +K  ++    ++             VE +    +       E     L    ++
Sbjct: 417 EEPVQVTKWEIEL---TKKLFGPKFRKDAPKVESFLLNLSQEE---LEAKAKELKAGGKI 470

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                 +        K+      T +    ++    +     G  R++ +V E     + 
Sbjct: 471 VFEVEGMDSQIELDDKFVSIEQVT-RTEHVREFVPNVIEPSFGIGRIIYSVFEHVFWSRP 529

Query: 338 IIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                +V  F   +   K      ++         ++     K       DD G  IG +
Sbjct: 530 EDSARAVLSFPPLVAPTKVLLVPLSNHPDLSSVAHQVSKVFRKEKIPFKVDDSGVSIGKR 589

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           ++  D LG P  V +  +   D  V ++ R +  +   ++EEV+     
Sbjct: 590 YSRNDELGTPFGVTIDFESAKDGTVTLRERDSTKQVRGTVEEVVKAIRD 638



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     NV  + R+        +E+    L   ++   SG  D +   M R
Sbjct: 41  SGLYDYGPPGCAFQANVIDVWRKHFILEEDMLEVDCSMLTPYEVLKTSGHVDKFSDWMCR 100


>gi|119356203|ref|YP_910847.1| histidyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
 gi|166980044|sp|A1BDE6|SYH_CHLPD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|119353552|gb|ABL64423.1| histidyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
          Length = 429

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 52/409 (12%), Positives = 109/409 (26%), Gaps = 26/409 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRL-ADRNDKAMIY 106
              V  ++    +  G  E+  P  +  +L+  S     D  GKEM     D   +++  
Sbjct: 21  WHYVEDVVHRLASLYGYSEIRTPVFEYTELFQRSIGTTTDIVGKEMFSFLPDPQGRSITL 80

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +                  + +   FR E        +  +F  +        
Sbjct: 81  RPEMTAGVMRAVLQKNLLSTAPIHKLFYLSELFRKERPQAGRQRQFSQFGAELLGVSSPA 140

Query: 167 PEGSKHSYNKM------------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                 ++                ++ L            +RA   P    L        
Sbjct: 141 AVAEVITFMMQVFETLGIRGLKLRINTLGDSSDRARYREILRAYLAPFYDRLDLASRERF 200

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           +    ++  SK+     I        D +S  ++ +     +   S      +   L   
Sbjct: 201 EKNPLRILDSKNPDMQEIIEGAPTLHDSLSHEALEDFEKVRFYLDSRSIAYDIDYRLVRG 260

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                           G + ++     + G     G    V    +  G  RV+  + + 
Sbjct: 261 LDYYCHTAFEVTSPELGAQDAIGGGGRYDGLAKELGSSGDVPASGFAAGMERVLITMEKQ 320

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                               + + A      D   ++  RL + G     D  G  + +Q
Sbjct: 321 GLFAALRPSGP--------KVYVVAQQHALLDHALQVAYRLRREGISTEVDLAGRSMKAQ 372

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              A+ +     + +G   V      +K+ +T  +   S+E +I   + 
Sbjct: 373 MRDANRMRACFALFIGEDEVVSGSYALKNLVTADQTAQSIETIIEMLNQ 421


>gi|154250128|ref|YP_001410953.1| histidyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
 gi|171769393|sp|A7HN13|SYH_FERNB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|154154064|gb|ABS61296.1| histidyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
          Length = 421

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 62/412 (15%), Positives = 126/412 (30%), Gaps = 34/412 (8%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAMIYGPTH 110
           +    ++   R G  E+  P  +   L++ S G+  D   KEM    D+  +++   P  
Sbjct: 22  IEKKAKDLAIRYGYGEIRTPIFEETKLFIRSVGQDTDIVQKEMYTFEDKGGRSITLRPEG 81

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   F       +  P  ++ I   FR E        R R+F    A  F  +   +
Sbjct: 82  TAPVVRAFVEDGMIAQGFPQKYFYIGPMFRYERPQSG---RQRQFHQFGAEIFGSSSAIA 138

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--LSHEFIVLADTGETQVFCSKDFM 228
                 + +   R+   +GL    +   S     D     E +        +  C    +
Sbjct: 139 DAE---LIIFADRLMKEIGLVDYQIHINSLGDIEDRVKYREALKEYYAQHLENLCDDCKV 195

Query: 229 DFPIPSENTDFDDIISLN-SIVEQWTAPYAATSDVHNEKLF-------------DSLPEN 274
            +           +         + T      S  H E+L                L   
Sbjct: 196 RYEKNVLRLLDCKVDIEYTKNAPKITDYLGENSRKHYEELKALLDSVGIKYIENPRLVRG 255

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESS 332
                R +   H    G   ++     + G   +     + + G   G  R++ A+    
Sbjct: 256 LDYYNRTVFEIHHQKLGAMSAIAGGGRYDGLIKEIGGKDVPALGFATGIERLILAL---- 311

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                 +  D +    + +  +   D   +    ++   L + G  V  + M   + +Q 
Sbjct: 312 --KAENVLVDEIETNVVYIAYLGGFD--VKAEAIRLSEELRREGIPVGLELMERGLSAQL 367

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             A  +G    +IVG   +  + V +K+  TG + +     V++      + 
Sbjct: 368 KNAARVGAKFTIIVGESELERNIVLVKNMETGEQLEFERSFVVSGIKDMITE 419


>gi|45187500|ref|NP_983723.1| ADL373Wp [Ashbya gossypii ATCC 10895]
 gi|44982238|gb|AAS51547.1| ADL373Wp [Ashbya gossypii ATCC 10895]
          Length = 658

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 6/142 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              +++   +     G  R++ A+ E S   +      SV  F   +   K      +++
Sbjct: 494 EHVREYVPNVIEPSFGIGRIIYAIFEHSFWSRPEDAARSVLSFPPLVAPTKVLLVPLSNN 553

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
               +   ++   L K       DD G  IG ++A  D LG P  + +  + + D  V +
Sbjct: 554 ADLAEVVTEVSRVLRKEQIPFKVDDSGVSIGKRYARNDELGTPFGITIDFESIKDGSVTL 613

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R +  +   S+ ++I     
Sbjct: 614 RERDSTRQVRGSVTDIIRAIRD 635



 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           G+Y + P G     N+  + R+        +E+    L   ++   SG  D +   M 
Sbjct: 41 SGLYDYGPPGCAFQANIVDVWRKHFILEEDMLEVDCTMLTPYEVLKTSGHVDKFSDWMC 99


>gi|302023321|ref|ZP_07248532.1| histidyl-tRNA synthetase [Streptococcus suis 05HAS68]
          Length = 405

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 59/417 (14%), Positives = 120/417 (28%), Gaps = 38/417 (9%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +    R    +    E+  P  +  ++   S     D   KEM    D+ ++ +   P  
Sbjct: 1   MENFTRSIFKQYNYAEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGERHITLRPEG 60

Query: 111 EEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
              +   +  +         P  FY +   FR E        R R+F       F     
Sbjct: 61  TAPVVRSYVENKLFAPEVQKPAKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGSNNP 117

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-----TGETQVFC 223
            +     +        F  LG+K I +   S       +     L D       +     
Sbjct: 118 ATD---VETIAMAYHFFEELGIKDIRLHLNSLGNPESRAAYRQALIDYLTPLKDQLSKDS 174

Query: 224 SKDFMDFPIPSENTDFDDII--------SLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            +   + P+   ++   +           L+ + E+ TA + A   + +      + +  
Sbjct: 175 QRRLEENPLRVLDSKEKEDKVAVENAPSILDYLDEESTAHFEAVKTMLDSLGIAYVIDTN 234

Query: 276 RVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
            V         IF F     G   ++     + G        +  ++G G       ++ 
Sbjct: 235 MVRGLDYYNHTIFEFMTEVGGNDLTICAGGRYDGLVTYFGGPETPAFGFGMGIERLILVL 294

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                        +       + I    Q        +   + K G     D +  ++ +
Sbjct: 295 -------EKQGIELPLDTQLDVYIAVLGQEANGGALDLVQAIRKQGFRAERDYLDRKLKA 347

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---INYASHRFSN 444
           QF  AD+ G    + +G   +   +V +K+  T  + + SLE +             
Sbjct: 348 QFKSADVFGAKAIITLGGSEIESGQVVVKNNQTRSQVETSLEALKTDFASILEELEK 404


>gi|257093696|ref|YP_003167337.1| histidyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046220|gb|ACV35408.1| histidyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 431

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 60/427 (14%), Positives = 110/427 (25%), Gaps = 33/427 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP   +  +     IR      G   + +P ++   L+  + G   D   KEM  
Sbjct: 11  GMNDILPDEAEFWEMFEDTIRSWLKSYGYRPIRLPVVEPTPLFKRAIGEVTDIVEKEMYS 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                           Y +   FR E   +    R R+F
Sbjct: 71  FVDTLNGEPLTLRPEGTAGCVRAAIQHNLVAQQTQRLYYLGQMFRHERPQKG---RYRQF 127

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 S   T          M           G+                  E I   +
Sbjct: 128 HQVGVESLGFTGPDIDAEQILMGARLWNDLGLDGIALQINTLGEPAERARHRAELIRYFE 187

Query: 216 TGETQVFCSKDFMD--FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
               ++           P+   ++    +  L     +      A S  H E +   L +
Sbjct: 188 HNGDRLDDDGRRRLHTNPLRILDSKNPALEDLILGAPKLIDHLGAESLAHFEGVQQVLRD 247

Query: 274 NKR------VSARGIEVG--HIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
             +         RG++     +F       G + ++     + G   +       + G  
Sbjct: 248 AGQPFTINPRLVRGLDYYNLTVFEWVTDRLGAQGTVCAGGRYDGLVQQLGGKPTPACGFA 307

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                   +     G+       V                      ++   L   G DV 
Sbjct: 308 MGVERLIALIREAGGEAKAAAVDVYLVHQGT--------AASRLAVRVAEALRDQGIDVL 359

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT----GIREDMSLEEVI 435
           +   G    +Q   AD  G    VI+G       +V +K  R T      ++ +S++ V 
Sbjct: 360 FHCGGGGFKAQMKKADASGASFAVIIGDDEADAGEVTLKLLRATDKQANEQQRVSVDGVA 419

Query: 436 NYASHRF 442
           +      
Sbjct: 420 DAIMSHI 426


>gi|195162783|ref|XP_002022233.1| GL24717 [Drosophila persimilis]
 gi|194104194|gb|EDW26237.1| GL24717 [Drosophila persimilis]
          Length = 679

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 7/132 (5%)

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYA 370
              G  R++ A++E S   +              +  +K      +++   +   +K+ +
Sbjct: 524 PSFGIGRIMYALLEHSFQCREGDDQRCYFTLPPLVAPLKCSILPLSNNAEFQPYTKKLSS 583

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDM 429
             +K       DD    IG ++A  D +  P  + V    + +   V ++ R T  +  +
Sbjct: 584 SFTKAELSHKVDDSSGSIGRRYARTDEIAIPYGITVDFDTLKEPHTVTLRDRNTMKQVRV 643

Query: 430 SLEEVINYASHR 441
            LE+V+      
Sbjct: 644 GLEQVVGVVKDL 655



 Score = 42.0 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+ ++ R+        +E+    L   
Sbjct: 73  LLKRRFFYDQSFAIYGGITGQYDFGPMGCALKSNILSLWRQYFALEEQMLEVDCSILTPE 132

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  + +   M++     + 
Sbjct: 133 PVLKASGHVERFADLMVKDVKTGEC 157


>gi|320167783|gb|EFW44682.1| glycyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 716

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 1/104 (0%)

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            +       +I   +++       +      + +      DD    IG ++A  D +G P
Sbjct: 594 PACIAPYKCVILPLSNNPDLVKLAKTAADAFNAMDVSYKVDDSSASIGRRYARTDEIGVP 653

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             V +    V +S V ++ R +  +  +S+ E       R +NN
Sbjct: 654 FGVTIDFDTVKNSSVTLRERDSKGQVRLSMTEAAETVK-RLANN 696


>gi|221125751|ref|XP_002157134.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 730

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 89/296 (30%), Gaps = 14/296 (4%)

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-TGETQV 221
            D T    +         Y        LK+     E          +     + +GE  V
Sbjct: 417 VDPTKMRFRQHMANEMAHYACDCWDCELKTSYGWVECVGCADRACFDLQQHTNASGEKLV 476

Query: 222 FCSKDFMDFPIPSENTDFDDI---ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                     +       +      S  +  +  T   A  +    EKL  S+ EN   S
Sbjct: 477 AMVDLATPVSVDVVEVCLEKSAVGKSFKNEAKAVTEYVAKMTVDEIEKLELSIKENGLFS 536

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
               +  ++     +    +    K    ++    +     G  R++ AV+E +   +  
Sbjct: 537 INVNDKEYV--LKKEMVKEVRRFKKDIHVREVSPHVVEPSFGIGRIMYAVLEQNFRVREG 594

Query: 339 IWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
               +       L  +K      + ++      +KI A L+++      DD    IG ++
Sbjct: 595 DEQRTWLSLPPLLAPVKCSVLPLSKNEAFDPFVKKISAMLTELDVSHKVDDSSISIGRRY 654

Query: 393 AVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           A  D +  P  V V    ++   + V ++ R T  +  + +  V           R
Sbjct: 655 ARTDEIAIPYGVTVDFDTINKEPNTVTLRERNTTKQIRVEVNSVGELVRDLVKGKR 710



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 2/119 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+ AI R         +E+    L    +   SG  D +   M+R
Sbjct: 140 AGLYDFGPMGCAMENNLLAIWRSHFVLEEQFLEVRCTQLTPIQVLKASGHVDRFTDVMVR 199

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
                D         E  + ++  +   S          +      +    + +++  E
Sbjct: 200 DIKTGDC-YRADHLLEGHLENLLSNKKLSEDKRKEYTLVLSQIDNFKKDDLWNLIQKYE 257


>gi|123965923|ref|YP_001011004.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
 gi|166228595|sp|A2BVT6|SYH_PROM5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123200289|gb|ABM71897.1| Histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
          Length = 429

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 61/393 (15%), Positives = 112/393 (28%), Gaps = 19/393 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP       NV  II E   R    E+  P L+  +L++       D   KEM  
Sbjct: 9   GTVDLLPDNLIKWQNVEKIILELLLRASVKEIRTPILEMTELFMRGIGEGTDVVSKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +++    P     +      +  S ++L   +Y +   FR E        R R+F
Sbjct: 69  FLDRGERSCTLRPEGTASVARAIIQNGISSKSLQKLWY-MGPMFRYERPQAG---RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                         S      +    L       L              +    F+   +
Sbjct: 125 HQLGVEFIGYDSVRSDIEIIALAWDILEKLGIKELNLEINTLGDFNDRSNFQKAFLKWLE 184

Query: 216 --TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP- 272
               +  +      +  P+   +T      S+     +     +  S      + + L  
Sbjct: 185 VNKNDLDLDSQNRIVKNPLRIFDTKNAKTKSILEDAPKLFDFLSEKSLKRYINIKEMLKL 244

Query: 273 -----ENKRVSARGIEVGHIFYFG-TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                       RG++      F  T  +L   AT  G    D+ +      +G     A
Sbjct: 245 LKIPFIENFNLVRGLDYYTHTAFEITSGALGSQATVCGGGRYDNLINQ----MGGTETPA 300

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                  +   ++    +   + + I I             +  +L      +  D  G 
Sbjct: 301 IGFAIGLERLILLAGKDLEESRETDIYIVNKGFQAEILAIDLSRKLRNYDLIIELDLSGA 360

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               QF  A+ L     +I+G      ++ +I+
Sbjct: 361 SFSKQFKKANKLKSKSIIIIGDDEALKNEFKIR 393


>gi|255513918|gb|EET90183.1| glycyl-tRNA synthetase [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 500

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 97/338 (28%), Gaps = 16/338 (4%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +    +      LP    Q    FR+E+ PR  ++R REF   +   F
Sbjct: 171 YLRPETAQGIFVNFKYLYRVYGMKLPGGIGQAGKVFRNEISPRQILIRLREFSQMELELF 230

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                 S                   +     +     +      E +       ++ + 
Sbjct: 231 FDPERDSDSVNGIAVDWSSLETKINFISEKDQKGGEAKVSRMSIAECV-------SEGYI 283

Query: 224 SKDFMDFPIPSENTDFDD--IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
               M + I  E     +           Q            N  L  S+  +   +A G
Sbjct: 284 PNRLMGYAIAEEVVFLKELGFKEDEFRFRQLLKDELPHYSRGNVDLEVSIGNSWEEAA-G 342

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS-----HDGK 336
                 F   +  S+           K     +    +G  R+   ++ +S         
Sbjct: 343 NAYRTDFDLKSHQSMSNQDMSVVDMDKKVLPHVVEVSLGLDRLFWGLLHNSLYRDGKRDW 402

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            ++            +     D        +I   L   G   ++   G  IG ++A AD
Sbjct: 403 DVLLLADDIAPYKYALFPLQKDDKIIAKSVEIGNLLKSKGIYPYYSASG-SIGKRYAKAD 461

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +G P+ + V    + +  V I+  L G +  +  E++
Sbjct: 462 EVGIPMAITVDYDTLENGTVTIRKALDGSQTRVKFEDI 499



 Score = 50.9 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G Y + P+G +   N+ +  R     R G +E+    +    ++  SG   ++   +  
Sbjct: 33 SGFYDYGPIGVRIKHNIESAWRRRFIERMGNLEIESTIVGHEKVYDASGHLKTFTDPITT 92

Query: 96 LADR 99
           ++ 
Sbjct: 93 CSNC 96


>gi|294651486|ref|ZP_06728799.1| histidine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|292822636|gb|EFF81526.1| histidine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 430

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/424 (11%), Positives = 113/424 (26%), Gaps = 21/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    A  ++   +    +  G  ++ +P ++   L+  +     D   KEM  
Sbjct: 9   GFNDILPTQTAAWRSLEQQLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D+           E     +         R      + +   FR E   +    +  +
Sbjct: 69  FFDKGTPPESLTLRPEGTAGCVRAMLEHNLLRGAAPRVWYVGPMFRYEKPQKGRYRQFHQ 128

Query: 155 FLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           F ++                  +++       +     +     +          EF+  
Sbjct: 129 FGVETFGVATPDIDAEIILMTARLWKRMGMAENVRLELNTLGETDERAEYRAALVEFLNQ 188

Query: 214 A------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY------AATSD 261
                  D+           +D  I S     ++   L+  +++ +  +        T  
Sbjct: 189 HKDQLDEDSQRRLTTNPLRILDSKIESTQKILENAPKLHDFLKEDSLNHFQQLQQYLTDA 248

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                +   L        + +        G++ ++     + G  G+       S     
Sbjct: 249 GVEFVINQKLVRGLDYYNKTVFEWTTTMLGSQGTVCAGGRYDGLVGQLKGKPDQSVPAVG 308

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDV 379
             +    +    +              +          +     E+I  +L        +
Sbjct: 309 FAMGMERLLLLLEQVAQNKDTRDCEVFLLAEPAYQAKALV--LAEQIRDQLEAANSTIRL 366

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
                   + SQ   AD  G    VI+G +     ++ +K   T  +  +SL E+  +  
Sbjct: 367 KT-GSQGSMKSQMKKADQSGAVYAVILGEREWDSQQLLVKELATAEQSQVSLAELAPFFI 425

Query: 440 HRFS 443
            +F 
Sbjct: 426 EKFK 429


>gi|116329521|ref|YP_799241.1| histidyl-tRNA synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116329836|ref|YP_799554.1| histidyl-tRNA synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122282389|sp|Q04WC4|SYH_LEPBJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|122282700|sp|Q04X87|SYH_LEPBL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|116122265|gb|ABJ80308.1| Histidine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123525|gb|ABJ74796.1| Histidine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 439

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 70/441 (15%), Positives = 143/441 (32%), Gaps = 52/441 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   + P   +  + + +I+RE     G  E   P L+S DL+      +   +++    
Sbjct: 15  GTRDFYPEEMRLRNWMFSIMRETVLSFGYEEYDGPILESFDLYKAKSGEEIVERQLYDFI 74

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D+ ++ +   P     +  +   ++++    P  ++ I   +R E   +    R RE   
Sbjct: 75  DKGERRVAIRPEMTPTLARMVAGNLRNLPR-PVRWFSIPNLWRYEQPGKG---RLREHWQ 130

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            +   F +    ++     M  S L+ F          +     +        + L+D  
Sbjct: 131 LNVDLFGVDTHRAELEILLMADSILKKFGAPTGSYQI-KVSHRKLLDSFLKNSLKLSD-- 187

Query: 218 ETQVFCSKDFMDFPIPS--ENTDFDDIISLNSIVEQW-------------------TAPY 256
             QV      +D       E  + +    LN+  EQ+                     P 
Sbjct: 188 -HQVHGVSKLLDKKSKISPETFEAEIKPLLNNFNEQFSLIETYLASNLETVSTIPGIDPD 246

Query: 257 AATSDVHNEKLFDSLPENKRV-----SARGIEV--GHIFYFGT-----KYSLPMSATFKG 304
           +     +  +    L  +K++       RG +   G IF         + SL     +  
Sbjct: 247 SIHFIRNLFQELGELGIDKQLVFDPSIIRGFDYYTGCIFEVFDTNPENRRSLYGGGRYDN 306

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
             G     Q+   G G   V       +H+    +  +      I        D+     
Sbjct: 307 LIGLFSKEQLSGIGFGLGDVTLKSFLENHNLIPDLSREKTLFLPIM-------DESIFVD 359

Query: 365 CEKIYARLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             K+   L + G   +   D    +IG Q  VA+  G+   + +G   +    V+IK  +
Sbjct: 360 TFKLSKELRENGILTETMLD--SAKIGKQIQVAEKKGYRYVLFLGESEIRTETVQIKDLV 417

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +G ++ +  + + +     F 
Sbjct: 418 SGEQKSLPRKGLSDILKKDFR 438


>gi|307610243|emb|CBW99804.1| histidyl-tRNA synthetase [Legionella pneumophila 130b]
          Length = 426

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 59/419 (14%), Positives = 118/419 (28%), Gaps = 16/419 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        +         R G  E+  P +++  L+  + G   D   KEM  
Sbjct: 11  GMNDILPDSTSVWRFIEQTFINCLVRYGYKEIRFPIVENTQLFKRTIGEITDIVEKEMYT 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D N  ++   P            H   +      +Y     FR E   +    +  +F
Sbjct: 71  FNDLNGDSITLRPEGTAGCVRACIEHGLLHNQQQKLWYL-GPMFRHERPQKGRYRQFNQF 129

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            ++                  +++             +             +  E++   
Sbjct: 130 GVEALGITGTAIELELISICRRLWTDLGFSQSVQLQVNSLGEINERQKYRSILVEYLRDH 189

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP-- 272
                +    +     P+   ++   D+  L     +        S  H +   + L   
Sbjct: 190 FQILDED-SKRRLDKNPLRVLDSKNPDLQQLIQNAPKLIDVLGDDSREHFQSFCNGLETL 248

Query: 273 ----ENKRVSARGIE-VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                   V  RG++  G   +      L   AT       D  V+            A 
Sbjct: 249 GIPYSINPVLVRGLDYYGQTVFEWVTDQLGSQATICAGGRYDMLVEFLGGAPTPAVGFAL 308

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDDMG 385
            +E        +   + +  K S+  I  +++        +   +       DV  +  G
Sbjct: 309 GLERIFLLMETLNLLNESNNKQSIFIIATNEEAIL-KALVMAESIRNAHPSLDVITNTAG 367

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRFS 443
               SQF  AD  G  L +I+G   ++   V IK   T   +  + + ++  +     +
Sbjct: 368 GGFKSQFKKADKSGARLALILGEDEIAREYVSIKDLRTEIEQISIPMTKINEFLQDYLA 426


>gi|228472354|ref|ZP_04057119.1| glycine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
 gi|228276222|gb|EEK14957.1| glycine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
          Length = 517

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 14/177 (7%)

Query: 281 GIEVGHIFYFG--TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS------ 332
           GI     F  G   KYS      F   + + +   +    +G  R+  A+   S      
Sbjct: 335 GIHSRTDFDLGNHEKYSGKKLQYFDPDENRSYVPYVLETSVGLDRLFLAIFSHSLQEEVL 394

Query: 333 ---HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                   +  P  +AP K++++ +   D    +    I+  L     +V +D+    +G
Sbjct: 395 EGGETRTVLRLPFVLAPTKVAVLPLVKKD-GLPEIALDIFNDLR-YDFNVAYDEKDA-VG 451

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            ++   D +G P  + V  +   D+ V I+HR T  ++ + +  +          N+
Sbjct: 452 RRYRRQDAVGTPFCITVDHQTKEDNTVTIRHRDTMEQQRVPISALRELILKEVDMNQ 508


>gi|226954470|ref|ZP_03824934.1| histidyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
 gi|226834819|gb|EEH67202.1| histidyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
          Length = 430

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 49/424 (11%), Positives = 114/424 (26%), Gaps = 21/424 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP    A  ++   +    +  G  ++ +P ++   L+  +     D   KEM  
Sbjct: 9   GFNDILPTQTAAWRSLEQQLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D+           E     +         R      + +   FR E   +    +  +
Sbjct: 69  FFDKGTPPESLTLRPEGTAGCVRAMLEHNLLRGAAPRVWYVGPMFRYEKPQKGRYRQFHQ 128

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           F ++         +                  +     + LG         +  +     
Sbjct: 129 FGVETFGVATPDIDAEIILMTARLWKRMGMAENVRLELNTLGETDERAEYRAALVEFLNQ 188

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY------AATSD 261
           H+  +  D+           +D  I S     ++   L+  +++ +  +        T  
Sbjct: 189 HKDQLDDDSQRRLTTNPLRILDSKIESTQKILENAPKLHDFLKEDSLNHFQQLQQYLTDA 248

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                +   L        + +        G++ ++     + G  G+       S     
Sbjct: 249 GVEFVINQKLVRGLDYYNKTVFEWTTTMLGSQGTVCAGGRYDGLVGQLKGKPDQSVPAVG 308

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDV 379
             +    +    +              +          +     E+I  +L        +
Sbjct: 309 FAMGMERLLLLLEQVAQTKDTRDCEVFLLAEPAYQAKALV--LAEQIRDQLEAANSTIRL 366

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
                   + SQ   AD  G    VI+G +     ++ +K   T  +  +SL E+  +  
Sbjct: 367 KT-GSQGSMKSQMKKADQSGAVYAVILGEREWDSQQLLVKELATAEQSQVSLAELAPFFI 425

Query: 440 HRFS 443
            +F 
Sbjct: 426 EKFK 429


>gi|315444723|ref|YP_004077602.1| histidyl-tRNA synthetase [Mycobacterium sp. Spyr1]
 gi|315263026|gb|ADT99767.1| histidyl-tRNA synthetase [Mycobacterium sp. Spyr1]
          Length = 420

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 58/395 (14%), Positives = 112/395 (28%), Gaps = 23/395 (5%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            R G  ++ +P  +   L+        D   KEM   ADR ++++   P     +     
Sbjct: 34  RRAGYGDIELPIFEDTALFARGVGESTDVVSKEMYTFADRGERSVTLRPEGTAGVMRAVI 93

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            H      LP         FR E RP+ G  R  +  +         P            
Sbjct: 94  EHGLDRGQLPVKLCYSGPFFRYE-RPQAGRYRQLQ-QVGIEAIGVDDPALDAEVIAVADA 151

Query: 180 SYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVFCSK----DFMDFPIP 233
            +  +        I    +    P   +L  EF+   D  E     ++      +D   P
Sbjct: 152 GFRSLGLDGFRLEITSLGDDSCRPQYRELLQEFLFALDLDEETRRRAEINPLRVLDDKRP 211

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLPENKRVSARGIEVGHIFY--- 289
                  +   +   +      +  T   H + L    +   + V          F    
Sbjct: 212 HVREMTANAPVMLDHLSDAAKEHFDTVLAHLDALSVPYVINPRMVRGLDYYTKTTFEFVH 271

Query: 290 --FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
              G +  +     + G   +     +   G G       +   +            A  
Sbjct: 272 DGLGAQSGIGGGGRYDGLMAQLGGRDLSGIGFGLGVDRTLLALRAEGRTAG----ETARV 327

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
            +  + + A  +V       +  +L   G  V        +      AD  G  + ++ G
Sbjct: 328 DVYAVPLGADAKVRLAV---LATQLRAAGVRVDVAYGDRSLKGAMKGADRSGASIALVAG 384

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + +    V +K   TG + D++ ++V+     R 
Sbjct: 385 DRDLEAGTVGVKSMATGEQVDVASDDVVAEVLSRL 419


>gi|209876788|ref|XP_002139836.1| glycyl-tRNA synthetase  [Cryptosporidium muris RN66]
 gi|209555442|gb|EEA05487.1| glycyl-tRNA synthetase family protein [Cryptosporidium muris RN66]
          Length = 662

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%)

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
                +G     D     IG ++A  D +G P  + V  + + D+ V ++ R T  +  +
Sbjct: 569 DECIGMGISCKLDTSSASIGRRYARTDEIGIPFGITVDFQTIKDNTVTLRERDTMKQVRL 628

Query: 430 SLEEVINYASHR 441
              EV+   S  
Sbjct: 629 HSSEVVKIISEL 640



 Score = 45.9 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G++ + P G      +  + R+        +E+S   L        SG  D +   M+ 
Sbjct: 38  AGLFDYGPPGCALKAEIEGLWRKHFILHEDMLEISATCLTPYSALKASGHVDRFTDFMIT 97

Query: 96  LADRNDKAMIYGPTHE 111
               ND         E
Sbjct: 98  DTKTNDYYRADKVLEE 113


>gi|146304364|ref|YP_001191680.1| Ser-tRNA(Thr) hydrolase [Metallosphaera sedula DSM 5348]
 gi|145702614|gb|ABP95756.1| Ser-tRNA(Thr) hydrolase [Metallosphaera sedula DSM 5348]
          Length = 386

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 67/187 (35%), Gaps = 7/187 (3%)

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y  T       +  S PE + +     +      + +         F+ +  +       
Sbjct: 182 YGETRVKGFLSVRFSRPEGRALPCVNEDPRIEVVYESDRDPDFPREFQDSVNRFQIWSRN 241

Query: 316 S--YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
                +    ++  ++  S + +    P  ++P  + ++ ++  D V     E     L 
Sbjct: 242 GNLVRVDVGLLLYYILLKSREKQTPTLPLWLSPIHVRILKVRKEDNV-----EDFAKSLK 296

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           + G  V  DD+ E +G++   A +   P   I G + +    + ++ R T  ++ M+++E
Sbjct: 297 ERGIRVQVDDLEEGLGNKIRRAGMDWIPFVAIAGERELKTGNLTVRVRETSEQKPMTVDE 356

Query: 434 VINYASH 440
           +      
Sbjct: 357 IERVVKS 363


>gi|154311325|ref|XP_001554992.1| hypothetical protein BC1G_06515 [Botryotinia fuckeliana B05.10]
 gi|150850912|gb|EDN26105.1| hypothetical protein BC1G_06515 [Botryotinia fuckeliana B05.10]
          Length = 665

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 58/151 (38%), Gaps = 9/151 (5%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA-------- 356
            + +++   +     G  R++ A++E ++  +G    D           +          
Sbjct: 493 ENTREYTPNVIEPSFGIGRILYALMEHNYWTRGSEGGDEARGVLSFPPIVAPTKVLLVPL 552

Query: 357 -HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
              +  +   ++I  +L  +G     DD    IG +++  D LG PL + V  + V+DS 
Sbjct: 553 SSHESFKPFLKQISYKLRSMGVSSRIDDSSASIGKRYSRNDELGTPLGITVDFQSVNDST 612

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             ++ R +  +   S E+++          +
Sbjct: 613 FTLRDRDSTKQVRASQEKILAAIKELVDGTK 643



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHS-------KGIYSWLPLGQKALDNVNAIIREEQN 62
            L+  P D ++     MLR  M +  S        G+Y + P G     NV  + R+   
Sbjct: 6   TLKGQPLDRQVLDS--MLRRRMFYTPSFEIYNGVAGLYDYGPPGCALQANVIDLWRKHFV 63

Query: 63  -RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
                +E+    L  A++   SG  + +   M +     D
Sbjct: 64  LEEDMLELDCTALTPAEVLQTSGHVEKFADWMCKDPKNGD 103


>gi|288574556|ref|ZP_06392913.1| histidyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570297|gb|EFC91854.1| histidyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 430

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 57/400 (14%), Positives = 110/400 (27%), Gaps = 15/400 (3%)

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEE 112
            + R+  +     E+ +P  +  +L+        D   KEM    D+  +++   P    
Sbjct: 27  NMSRKIADLFSYKEVHLPIFEHTELFARGIGDTTDVVEKEMYTFEDKGGRSITLRPELTA 86

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT-PEGSK 171
            M   +  H  +    P   +     FR E   +    R R+F   D  +     P    
Sbjct: 87  SMVRCYLEHSMNGGAQPVKLWGSGPMFRYERPQKG---RYRQFWQLDFEALGSDSPLVDL 143

Query: 172 HSYNKMFVSY--LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                    +  L + +   + +     E  P       +++      E    C   F  
Sbjct: 144 EVIMTAIELFRNLGMSNLEVVINSVGCPECRPAYRKALMDYLRPY-LDELCGTCQNRFDR 202

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA------RGIE 283
            P+   +   D    +                 H + +   L     V        RG++
Sbjct: 203 NPLRILDCKNDRCKEITDGAPAIFETLCDECSEHFKAVTSGLDSLGIVYHIDKRLVRGLD 262

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                 F  +     +       G+   +     G     V  A                
Sbjct: 263 YYTKTAFEVQSGDLGAQNAVCGGGRYDNLSEAIGGPHVPGVGFAAGLDRIVLTMEQQGCD 322

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
                   + +   D++ R     +  RL + G     D +G  + +Q   A   G  + 
Sbjct: 323 FGREPTPDVFVVCADEIARSLAVDVLYRLRREGISADMDYLGRSMKAQMKSAVNGGSSVA 382

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            IVG   +    V +K      +  + LE + +  S    
Sbjct: 383 CIVGGDELDKGVVTVKDLSRSEQSQVELESLTSSVSRLLD 422


>gi|303236784|ref|ZP_07323363.1| anticodon binding domain protein [Prevotella disiens FB035-09AN]
 gi|302482952|gb|EFL45968.1| anticodon binding domain protein [Prevotella disiens FB035-09AN]
          Length = 231

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 75/199 (37%), Gaps = 15/199 (7%)

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           A YA  +     ++     E + + +R            K+S      F     +++   
Sbjct: 28  AHYANAATDIEFRMPFGFKEVEGIHSRTNFDLSQHE---KFSGRQMKYFDPERNENYVPY 84

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDA 364
           +    IG  R+   V+  S+  + +           P+ +AP K +++ +   D    + 
Sbjct: 85  VVETSIGVDRMFLTVMCHSYTEEQLENGSSRVVLRLPEPLAPVKCAVLPLVNKD-GLPEK 143

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            ++I   L     +    +  + IG ++   D +G P  V V    ++D+ V +++R + 
Sbjct: 144 AQEIVDDLK-FHFNTTI-EAKDSIGKRYRRQDAIGTPFCVTVDGDSLTDNSVTLRYRDSM 201

Query: 425 IREDMSLEEVINYASHRFS 443
            +  + + ++      R S
Sbjct: 202 EQVRVPIAKLREIIEDRVS 220


>gi|78066581|ref|YP_369350.1| histidyl-tRNA synthetase [Burkholderia sp. 383]
 gi|123742580|sp|Q39FR0|SYH_BURS3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|77967326|gb|ABB08706.1| histidyl-tRNA synthetase [Burkholderia sp. 383]
          Length = 446

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 57/431 (13%), Positives = 105/431 (24%), Gaps = 39/431 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FTDALNGENLTMRPENTAAVVRASIEHNMLYDGPKRLWYIGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 TGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-------- 265
                +     +     P+   +T    +  +     +        S  H E        
Sbjct: 193 QFADVLDEDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGDESRAHFEGLQRLLLA 252

Query: 266 -----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                K+   L          +        G + ++     +     +       + G  
Sbjct: 253 NNIPFKINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWA 312

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                   +    D         V              +  R+       RL   G DV 
Sbjct: 313 MGIERILELLKEDDLAPEQEGVDVYVVHQG--------ETAREQAFIAAERLRDTGLDVI 364

Query: 381 W----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-------GIREDM 429
           +    D       SQ   AD  G    VI G + V++  V +K            +++ +
Sbjct: 365 FHCSADGAPASFKSQMKRADASGAAFAVIFGEEEVANGTVGVKALRGAGGDGEKNVQQTV 424

Query: 430 SLEEVINYASH 440
            +E +  +  +
Sbjct: 425 PVEGLTEFLIN 435


>gi|330817166|ref|YP_004360871.1| Histidyl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327369559|gb|AEA60915.1| Histidyl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 444

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 60/424 (14%), Positives = 115/424 (27%), Gaps = 27/424 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   + ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFESTVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + +   FR E   R    R R+F
Sbjct: 76  FTDALNGENLTLRPENTAAVVRAAIEHNLLYDGPKRLWYVGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEAIGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 TGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                +     +     P+   +T    +  +     +       +S  H + L   L  
Sbjct: 193 QHVEVLDEDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGESSRAHFDGLQRLLKA 252

Query: 274 NKR------VSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           N           RG++     +F + T     + A    A G  +   +   G       
Sbjct: 253 NNVPFTINPRLVRGLDYYNLTVFEWVTD---KLGAQGTVAAGGRYDPLIEQLGGKPTAAC 309

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW---- 381
              +      + +     V       + +    +  R+    I  RL   G DV +    
Sbjct: 310 GWAMGVERILELLKEEQLVPEQDGVDVYLVHQGEAAREQAFIIGERLRDTGLDVIFHCSA 369

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-----REDMSLEEVIN 436
           D       SQ   AD  G    VI+G   V++    +K           ++ +++E +  
Sbjct: 370 DGASASFKSQMKRADASGAAYAVILGEDEVANGTAGVKALRGAEGEKSAQQTVTVENLTE 429

Query: 437 YASH 440
           +  +
Sbjct: 430 FLIN 433


>gi|322515410|ref|ZP_08068402.1| histidine--tRNA ligase [Actinobacillus ureae ATCC 25976]
 gi|322118565|gb|EFX90797.1| histidine--tRNA ligase [Actinobacillus ureae ATCC 25976]
          Length = 423

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 61/415 (14%), Positives = 127/415 (30%), Gaps = 33/415 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               +   +R      G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIENKVRNVLAGYGYSEVRMPIVESTPLFSRAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P                Y N    +Y +   FR E   +    R R+F       F + 
Sbjct: 80  RPEGTAGCVRAAIERGWIYNNEQRLWY-MGPMFRHERPQKG---RYRQFHQAGVEIFGIP 135

Query: 167 PEGSKHSYNKMF----------VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                     +                  + +G         S  +    +H  ++  + 
Sbjct: 136 NPEVDAELIILTARLWKELGIDQHVSLQLNSIGSLEARANYRSTLVKFLGNHIALMSDEE 195

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA------TSDVHNEKLFDS 270
            +  V      +D    +     +D   L   ++  +  + A       +     ++   
Sbjct: 196 KDRLVKNPLRILDTKNQALQEVLNDAPKLLDYLDDDSREHFAQLCSLLDAMGIAYEVNPK 255

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAV 328
           L        + +        G++ ++     + G       H  Q   + +G  R+V  V
Sbjct: 256 LVRGLDYYNKTVFEWVTSALGSQGTVCGGGRYDGLVEQLGGHATQGVGFAMGLERLVLLV 315

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            E + +       D    +      +           E+I   L +    V     G   
Sbjct: 316 QEVNKEISLPKAVDVYVVYSGEGATLN-----AFRIAEQIRTELPQ--LRVMTHCSGGNF 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRF 442
             QF  AD +   + +++G   V++ KV +K   +G  +  ++  ++I+  + RF
Sbjct: 369 KKQFKRADKVEAQIALVIGESEVAEQKVVVKDLQSGAEQITIAQVDIISELTKRF 423


>gi|255613479|ref|XP_002539512.1| glycyl-tRNA synthetase, putative [Ricinus communis]
 gi|223505459|gb|EEF22871.1| glycyl-tRNA synthetase, putative [Ricinus communis]
          Length = 160

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 50/109 (45%), Gaps = 4/109 (3%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
              +AP K ++  +   D    +   +I  RL  V   + +++    IG ++   D +G 
Sbjct: 55  HPCLAPVKAAIFPLTKKD-GLPEKAREIMDRLK-VDFQLQYEEKDA-IGKRYRRQDAIGT 111

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           P  + V  + + D+ V I++R +  +E + +E++ +       + + VL
Sbjct: 112 PFCITVDHQTLEDNTVTIRYRDSMKQERVPVEQL-DKIIGDLVSWKNVL 159


>gi|319940132|ref|ZP_08014486.1| histidyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
 gi|319810846|gb|EFW07173.1| histidyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
          Length = 426

 Score = 82.9 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 56/399 (14%), Positives = 109/399 (27%), Gaps = 19/399 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEEFARKTFKKYHYAEIRTPLFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKLYYMGSMFRYERPQAG---RLREFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLG---LKSIPMRAESGPIGGDLSHEFIVL------ADT 216
               +      M   +       G     +    AES         +++         D+
Sbjct: 137 NNPATDVETIAMAAQFFNEIGIQGVTLQLNSLGNAESRAAYRQALIDYLTPLKDSLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-FDSLPENK 275
                      +D     +    ++  S+   +++ +  +        E L    +    
Sbjct: 197 QRRLEENPLRVLDSKEKEDKLAVENAPSILDYLDEESQTHFQAVRSMLEALGIPYIINTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F    +         A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFTADVAGNELT--ICAGGRYDSLVAYFGGPETAGFGFGMGVERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +       + I        +   +I   L K G     D +  ++ +QF  A
Sbjct: 315 VLEKQGVVLPLEDSLDVYIAVLGDGANNKALEIVQALRKQGFTAERDYLNRKLKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           D     + + +G   +  ++V IK+  T     +SL ++
Sbjct: 375 DAFSAKVLITLGESEIESNQVTIKNNQTREELTVSLNQI 413


>gi|182414470|ref|YP_001819536.1| histidyl-tRNA synthetase [Opitutus terrae PB90-1]
 gi|229558700|sp|B1ZUW6|SYH_OPITP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|177841684|gb|ACB75936.1| histidyl-tRNA synthetase [Opitutus terrae PB90-1]
          Length = 437

 Score = 82.9 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 68/439 (15%), Positives = 126/439 (28%), Gaps = 33/439 (7%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKE 92
           Q   G   + P      +++  + R+     G  E   P L+  +L+  +SG  D    +
Sbjct: 5   QSLPGFREFYPDALARRNHIFRLWRQTAVAFGFAEYDAPVLEPLELYKTKSG--DEIEAQ 62

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           +    D+  + +   P     +  +  +   +    P  ++ I   +R E   +      
Sbjct: 63  LFSFTDKGGREVALRPEMTPTVCRMVGAKA-NALKRPIKWFSIAEYYRYERAQKGRERAF 121

Query: 153 REFL---------MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA--ESGP 201
            +F            +     L  +  K         Y+R+  R            +   
Sbjct: 122 FQFNADLFAEPGPEAEIELIALLTQCLKAFGLTEQDFYIRLSDRNLWFFYLEALGLDEPR 181

Query: 202 IGG--DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           I        +F  + D            +D  +     +F  I +L + +EQ  AP    
Sbjct: 182 IRAVLSAVDKFEKVGDDAFKPYAEQFGPLDLALKQRVLEFLQIKTL-ASLEQTLAPLGGE 240

Query: 260 SDV----HNEKLFDSL--------PENKRVSARGIEVGHIFYFGTKYSLPM-SATFKGAD 306
                     KL D L         E      RG+     F F          A   G  
Sbjct: 241 KLAARLGDWRKLLDGLAAMGLSPFIEVDLGVVRGLAYYTGFVFEAFDRKGELRAIAGGGR 300

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
             D   ++G   + A+      +             +          I    +      +
Sbjct: 301 YNDLVKKLGGPDLPAVGFAIGDVTLGLLLDARGLMPAFVQASDVYCVIGGAAERQAAFAD 360

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
                L   G  V +       G QF +A   G  L +I G   ++ + V+++   T   
Sbjct: 361 --VNALRAAGFKVDYPLKDVPFGKQFKLAADSGAKLALIYGPDELAKNVVKLRDLTTRTE 418

Query: 427 EDMSLEEVINYASHRFSNN 445
            D+  E+V       FS +
Sbjct: 419 TDVPREQVQAMVRDFFSTD 437


>gi|46397793|sp|Q7VWL1|SYH_BORPE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
          Length = 428

 Score = 82.9 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 62/428 (14%), Positives = 115/428 (26%), Gaps = 23/428 (5%)

Query: 32  IHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-D 87
             + S   G+   LP      +    I+R      G   +  P L+   L+    G   D
Sbjct: 5   FQKVSAIRGMNDVLPGPSARWEKFEEIVRGWLRSYGYRNVRTPVLEHTRLFARGIGEVTD 64

Query: 88  SYGKEMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
              KEM    D  N  ++   P     +      H   Y   P   Y I   FR E   R
Sbjct: 65  IVEKEMYTFTDALNGDSLTMRPEMTAGIVRASIEHNMLYDR-PHRVYAIGPVFRHERPQR 123

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
               +  +  ++         +             L +       +   +          
Sbjct: 124 GRYRQFHQIDVEALGFAGPDVDAEMIVMLARLWKLLGLQDVRLELNSLGQPAERAAHRAA 183

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E +        +    +     P+   +T    +  +     +        S  H + 
Sbjct: 184 LIEHLERHQDVLDED-GRRRMYSNPLRVLDTKNPAMQEMADSAPRLFDFLGEASRSHFDG 242

Query: 267 LFDSLPENKRVSA------RGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           L   L +            RG++     +F + T     + A      G  +   +   G
Sbjct: 243 LCQRLADAGIEYRLNPRLVRGLDYYNLTVFEWVTD---RLGAQGTVCGGGRYDGLVELLG 299

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                 V   I              +       + I    +  +    ++  +L   G D
Sbjct: 300 GKPTPAVGFAIGMERLLDLWEQSVEIEQPAECEVYIVHQGEEGQRLAARVGEQLRDAGLD 359

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIREDMSLEE 433
           V          +QF  AD  G  + VI+G   V+     IKH          ++ + L +
Sbjct: 360 VIVHAGAAGFKAQFKRADASGARIAVILGGDEVASRTASIKHLRGPVGADAAQQQVPLAQ 419

Query: 434 VINYASHR 441
           + +    +
Sbjct: 420 LADVLKSK 427


>gi|240171984|ref|ZP_04750643.1| histidyl-tRNA synthetase [Mycobacterium kansasii ATCC 12478]
          Length = 420

 Score = 82.9 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 66/392 (16%), Positives = 119/392 (30%), Gaps = 15/392 (3%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            R G   + +P  +   L+        D   KEM   ADR D+++   P     +     
Sbjct: 33  RRAGYGYIELPIFEDTALFARGVGESTDVVSKEMYTFADRGDRSVTLRPEGTAGVVRAVI 92

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            H      LP         FR E RP+ G  R  +  +         P            
Sbjct: 93  EHGLDRGALPVKLSYAGPFFRYE-RPQAGRYRQLQ-QVGVEAIGVDDPALDAEVIAVADA 150

Query: 180 SYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGE----TQVFCSKDFMDFPIP 233
            +  +        I    +    P   +L  EF+   D  E             +D   P
Sbjct: 151 GFRALGLEGFRLEITSLGDETCRPQYRELLQEFLFGLDLDEETRRRAQLNPLRVLDDKRP 210

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
           +      D   L   +      +  T   H + L      N R+  RG++      F   
Sbjct: 211 AVRAMTADAPVLLDHLSDTAKQHFDTVLSHLDALGVPYVINARM-VRGLDYYTKTTFEFV 269

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +    + +  G  G+   +     G     +   +              +V       + 
Sbjct: 270 HDGLGAQSGIGGGGRYDGLMRQLGGQNLSGIGFGLGVDRTLLALRAEGKNVGETTRCDVF 329

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                +  +     + A+L   G  V   + D G + G+    AD  G  + ++VG + +
Sbjct: 330 GVPLSEQAKLKLAVLAAQLRASGVRVDLAYGDRGLK-GAM-RAADRSGARIALVVGDRDI 387

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             + V +K   TG +  ++L+ V+     R +
Sbjct: 388 EAAMVGVKDLATGDQVSVALDSVVAEVVSRLA 419


>gi|164657552|ref|XP_001729902.1| hypothetical protein MGL_2888 [Malassezia globosa CBS 7966]
 gi|159103796|gb|EDP42688.1| hypothetical protein MGL_2888 [Malassezia globosa CBS 7966]
          Length = 671

 Score = 82.9 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 82/294 (27%), Gaps = 21/294 (7%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            D        +      +  +     +             +         H+ +V     
Sbjct: 370 MDNEMAHYASDCWDTEIHTSYGWIECVGCADRSAF-----DLTMHSQRTKHDLMVQEPLK 424

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E +V+        P  ++            ++E              +   +S  +    
Sbjct: 425 EPKVY----QKYVPTINKKVLGPFFKKNAKVIEDTILSMGQECLRKMQNDLESSGKAPLQ 480

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           +         F    ++      T K    ++    +     G  R+  A++E S   + 
Sbjct: 481 A-----NNETFEVTKEHVQIEYKTIK-ESVRNFIPNVIEPSFGLGRIFYALLEHSFWARE 534

Query: 338 IIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                 V      +   K      + ++        I  +L  +      DD    IG +
Sbjct: 535 EDKERGVLSLPPLVAPFKVLIVPISSNEQLSPMARDISKKLRSLNIASRIDDSNATIGRR 594

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +A  D LG P    +    VS   + ++ R T ++   ++++VI+  +   S  
Sbjct: 595 YARNDELGTPFACTIDFASVSKGTITLRERDTTLQRIGTVDQVIDVVARLCSGR 648



 Score = 45.9 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     N+ +  R         +E+    +  +D+   SG  D +   M++
Sbjct: 47  AGLYDYGPSGAALQANIISHWRNHFIIEEDMLELDTTIMTLSDVLKTSGHVDKFSDWMVK 106

Query: 96  LADRNDKAMIYGPTHEEV 113
                D         E V
Sbjct: 107 DLKSGDI-YRADHMVENV 123


>gi|241667736|ref|ZP_04755314.1| histidyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876280|ref|ZP_05248990.1| histidyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842301|gb|EET20715.1| histidyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 424

 Score = 82.9 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 56/406 (13%), Positives = 118/406 (29%), Gaps = 20/406 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              + + I+   ++    E+ +P L+ ++L+  S     D   KE     DR+ +++   
Sbjct: 21  WQFLESKIKSILDKYNYDEVRLPVLEKSELFHRSVGETSDIVSKETYDFVDRSGESLTLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P        +   +  + R      +     FR E   +    R R+F      ++    
Sbjct: 81  PEGTAGCVRMVIENSLANRGQTQKLWYSGPMFRYERPQKG---RYRQFYQLGVEAYGYDN 137

Query: 168 ----------EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                       +      +        + LG  S         +     +   +  D+ 
Sbjct: 138 IAIDLEILTISWNLFRELGISECVKLELNSLGSSSNRQEYTKALLEYLKPYHAQLDEDSI 197

Query: 218 ETQVFCSKDFMD-FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                     +D     ++    +    ++ I E   A +  T +  +    +     K 
Sbjct: 198 RRLDKNPLRILDSKNEQTQQVLVNAPKLIDFIDEDSLARFEQTCEYLDNLGVNYQVNQKL 257

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V       G +F + T      +A   G    +    +G    GA+     +       +
Sbjct: 258 VRGLDYYSGLVFEWVTDRLGAQAAVCAGGRYDNLIESLGGQKTGAIGFAIGLERLLLLLE 317

Query: 337 GIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                            +  +         E +   L  +  D   D       SQF  A
Sbjct: 318 SEGKLPIEDDKSDVFFILDNNQLHRSLLLVENVRQELPALKID--MDLKFGSFKSQFKKA 375

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYASH 440
           D     + VI+G   +    V +K+      +E + L ++IN+   
Sbjct: 376 DKSDAKIAVIIGQDELLQQTVGVKYLQQDKQQEQIPLNKLINFLEK 421


>gi|315048629|ref|XP_003173689.1| glycyl-tRNA synthetase 1 [Arthroderma gypseum CBS 118893]
 gi|311341656|gb|EFR00859.1| glycyl-tRNA synthetase 1 [Arthroderma gypseum CBS 118893]
          Length = 629

 Score = 82.9 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/260 (11%), Positives = 74/260 (28%), Gaps = 4/260 (1%)

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +              +          E +  AD     +   K+    P+    T  + 
Sbjct: 351 RQHMQNEMAHYATDCWDVELFTSYGWIECVGCADRSAYDLSVHKNKTGAPLVVRQTRAEP 410

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +      V+     +       ++ +  ++    +     + +        + ++     
Sbjct: 411 LRIEEWQVDIDKKKFGPRFKKDSKTVETAIEALTQDVREKLSLDLEKNGKIEIAVDGVGD 470

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
            K   GKD         +  +R     +              +          +  D+  
Sbjct: 471 GKVEIGKDLVQIEKRTRVENVREYTPNVI----EPSFGIGRILYCLMEHAYWSRPDDEAR 526

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
               +++  +L ++G     DD    IG +++  D LG P  +    + V D+   ++ R
Sbjct: 527 GPLIQRLTLKLRRLGVSNRVDDSSASIGKRYSRNDELGTPFGITADFQSVKDNTFTLRDR 586

Query: 422 LTGIREDMSLEEVINYASHR 441
            T  +   S +E+ N     
Sbjct: 587 DTTKQVRASEDEICNAVKSL 606



 Score = 51.7 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     NV  + R+        +E+    L   ++   SG  D +   M +
Sbjct: 36 SGLYDYGPPGCALQANVVDLWRKHFVLEEDMLEVDTSMLTPHEVLKTSGHVDKFADWMCK 95


>gi|322699026|gb|EFY90791.1| glycyl-tRNA synthetase 1 [Metarhizium acridum CQMa 102]
          Length = 662

 Score = 82.9 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/290 (10%), Positives = 84/290 (28%), Gaps = 24/290 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++  +      E +  AD     +         P+       +
Sbjct: 351 FRQHMANEMAHYACDCWDAELLTSSGWVECVGCADRSAYDLSVHAKKTGAPLVVRERLEE 410

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSL----PENKRVSARGIEVGHIFYFGTKYSL 296
            ++     V+     +        + +  +L     E +   A+ ++             
Sbjct: 411 PLVIEEWQVDIEKKKFGPLFKKDAKTVETALLATSQEEREKLAKQLKDTGKISLDVAGVG 470

Query: 297 PMSATFKG-----------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                               + ++    +     G  R++ ++IE +   +G    D   
Sbjct: 471 DGKVEVASDTLKIEFRKRIENTREFTPNVIEPSFGIGRILYSLIEHNFWTRGSDGGDEAR 530

Query: 346 PFKISLINIKA---------HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                   +           ++   R   +K+  +L   G     DD    IG +++  D
Sbjct: 531 GVLSFPPTVAPTKVLIVPLSNNTQFRPIIKKLSQQLRLAGISSRIDDSSASIGKRYSRND 590

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            LG PL + V  + + DS + ++ R +  +      ++++        ++
Sbjct: 591 ELGTPLGITVDFQTLQDSTITLRDRDSTAQVRAEEFKILDAIKALVDGSK 640



 Score = 50.9 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHS-------KGIYSWLPLGQKALDNVNAIIREEQN 62
            L+  P D  +     MLR  M +  S        G+Y + P G     N+  + R+   
Sbjct: 7   TLKGQPLDKPVLDA--MLRRRMFYTPSFEIYGGVGGLYDYGPPGCSLQANIVDLWRKHFI 64

Query: 63  -RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
                +E+    L   D+   SG  D +   M +     +
Sbjct: 65  LEEDMLEVDCTVLTPHDVLKTSGHVDKFADWMCKDPKNGE 104


>gi|315221549|ref|ZP_07863469.1| histidyl-tRNA synthetase [Streptococcus anginosus F0211]
 gi|315189383|gb|EFU23078.1| histidyl-tRNA synthetase [Streptococcus anginosus F0211]
          Length = 431

 Score = 82.9 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 54/408 (13%), Positives = 111/408 (27%), Gaps = 19/408 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 25  WQYVEEFARKTFKKYHYAEIRTPLFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 84

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF       F  
Sbjct: 85  PEGTAPVVRSYVENKLFAPEVQKPVKLYYMGSMFRYERPQAG---RLREFHQIGVECFGS 141

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLG---LKSIPMRAESGPIGGDLSHEFIVL------ADT 216
               +      M   +       G     +    AES         +++         D+
Sbjct: 142 NNPATDVETIAMAAQFFNEIGIQGVTLQLNSLGNAESRAAYRQALIDYLTPLKDSLSKDS 201

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS-LPENK 275
                      +D     +    ++  S+   +++ +  +        E L    +    
Sbjct: 202 QRRLEENPLRVLDSKEKEDKLAVENAPSILDYLDEESQTHFQAVRSMLEALKIPYVINTN 261

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F    +         A G+   +     G         +       
Sbjct: 262 MVRGLDYYNHTIFEFTAAVAGNELT--ICAGGRYDSLVAYFGGPETAGFGFGMGVERLLL 319

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  ++       + +    +   +   +I   L K G     D +  ++ +QF  A
Sbjct: 320 VLEKQGVALPLEDSLDVYVAVLGEGANNKALEIVQALRKQGFTAERDYLNRKLKAQFKSA 379

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D     + + +G   +  ++V +K+  T     + L ++       F 
Sbjct: 380 DTFSAKVLITLGESEIESNQVTVKNNHTREELTVDLNQIQEDFQTIFE 427


>gi|315149220|gb|EFT93236.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0012]
          Length = 433

 Score = 82.9 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 108/396 (27%), Gaps = 11/396 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDIVSKEMYDFYDKGDRHVTLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  +         P+  Y +   FR E      + +  +  ++   S + 
Sbjct: 80  PEGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYERPQAGRLRQFHQIGVEAFGSENP 139

Query: 166 ------TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                                   + + LG K          I     H   +  D+   
Sbjct: 140 ALDVEIMAMALDFFKQLGIQQIKLVINSLGDKETRATYRQALIDYLEPHMAELSEDSQRR 199

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                   +D     +     +  S+ + + E   A + A +D+ +        ++  V 
Sbjct: 200 LHENPLRVLDSKDKKDKVIVAEAPSILDYLNEPSKAHFEAVTDMLDLLEIPYEIDSNMVR 259

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                   IF   ++     + +   A G+ + +     G         +          
Sbjct: 260 GLDYYTHTIFEIMSEAPKMGAQSTICAGGRYNGLVEELGGPDTPGFGFGMGIERVLLTME 319

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +         +         A  ++   +   G     D M  +  +QF  AD L
Sbjct: 320 AEEVVIPALSELDAYVVGIGSETNVAALQLVQSIRNFGFSADRDYMNRKPKAQFKTADKL 379

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              L + +G   +++  V +K   T   +   L  +
Sbjct: 380 QAKLVLTIGENELNEGIVNVKSMATREEKSFPLSAI 415


>gi|225010202|ref|ZP_03700674.1| glycyl-tRNA synthetase [Flavobacteria bacterium MS024-3C]
 gi|225005681|gb|EEG43631.1| glycyl-tRNA synthetase [Flavobacteria bacterium MS024-3C]
          Length = 514

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 25/242 (10%)

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             D  +         + F   +      D +          A YA  +     K      
Sbjct: 282 WYDKWKETRIKWHYSLGFSADNYRFHDHDKL----------AHYADAAADIEFKFPFGFK 331

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV---- 328
           E + + +R            K+S      F     + +   +    IG  R+  A+    
Sbjct: 332 ELEGIHSRTDFDLSSHE---KHSGKKLQFFDPELNESYVPYVVETSIGVDRMFLAIFSKS 388

Query: 329 -----IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
                +E+      +  P  +AP K +++ +   D    +   +I+  L +    V +D+
Sbjct: 389 LEEETLENGSTRTVLKLPAVLAPTKAAILPLVKKD-GLSELAHEIFQEL-QWDFAVSYDE 446

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               +G ++   D LG P  + V  +   D  V I+HR +  +E ++++++        S
Sbjct: 447 KDA-VGRRYRRQDALGTPFCITVDHQTKEDQTVTIRHRDSMEQERVAVKDLAGIIEQAVS 505

Query: 444 NN 445
             
Sbjct: 506 AK 507


>gi|118617356|ref|YP_905688.1| histidyl-tRNA synthetase [Mycobacterium ulcerans Agy99]
 gi|229558697|sp|A0PPE8|SYH_MYCUA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|118569466|gb|ABL04217.1| histidyl-tRNA synthetase HisS [Mycobacterium ulcerans Agy99]
          Length = 420

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/391 (15%), Positives = 114/391 (29%), Gaps = 15/391 (3%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            R G   + +P  +   L+        D   KEM   ADR D+++   P     +     
Sbjct: 33  RRAGYGHIELPIFEDTALFARGVGESTDVVSKEMYTFADRGDRSVTLRPEGTAGVVRAVI 92

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            H      LP         FR E RP+ G  R  +  +         P            
Sbjct: 93  EHGLDRGALPVKLCYAGPFFRYE-RPQAGRYRQLQ-QVGVEAIGVDDPALDAEVIAIADA 150

Query: 180 SYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGE----TQVFCSKDFMDFPIP 233
            +  +        I    +    P   +L  EF+   D  +             +D   P
Sbjct: 151 GFRSLGLDGFRLEITSLGDETCRPQYRELLQEFLFGLDLDDETRRRAALNPLRVLDDKRP 210

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                  +   L   +      +  T   H + L      N R+  RG++      F   
Sbjct: 211 EVRAMTAEAPVLLDHLSDVAKQHFDTVLAHLDALRVPYVINPRM-VRGLDYYTKTTFEFV 269

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +    + +  G  G+   +     G     +   +              SV       + 
Sbjct: 270 HDGLGAQSGIGGGGRYDGLMKQLGGQDLSGIGFGLGVDRTMLALRAEGKSVGESARCDVF 329

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                +  +     +  +L   G  V   + D G + G+    AD  G  + ++ G + +
Sbjct: 330 GVPLSEQAKLTLAVLAGQLRASGVRVDLAYGDRGLK-GAM-RAADRSGARVALVTGDRDI 387

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               V +K   TG +  +S + V++    + 
Sbjct: 388 EAGTVGVKDLGTGEQVSVSTDSVVDDVISKL 418


>gi|261189484|ref|XP_002621153.1| glycyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239591730|gb|EEQ74311.1| glycyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239608956|gb|EEQ85943.1| glycyl-tRNA synthetase [Ajellomyces dermatitidis ER-3]
 gi|327354027|gb|EGE82884.1| glycyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 656

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 6/145 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
            + +++   +     G  R++A ++E  +  +       V  F   +   K      ++ 
Sbjct: 491 ENIREYTPNVIEPSFGIGRILACLMEHVYWSRPDDEARGVLSFPPIVAPTKVLLVPLSNH 550

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +    ++  +L ++G     DD    IG ++A  D LG P  + V  + V D+   +
Sbjct: 551 PSFQPLVHRLTLKLRRLGVSNRVDDSSASIGKRYARNDELGTPFGITVDFQSVKDNTFTL 610

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           + R T  +   S EE+         
Sbjct: 611 RERDTTKQVRASEEEICKAVKSLVE 635



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     NV  I R+        +E+    L   ++   SG  D +   M +
Sbjct: 38 SGLYDYGPPGCALQANVVDIWRKHFVLEEDMLEVDCTMLTPHEVLKTSGHVDKFADWMCK 97


>gi|322386507|ref|ZP_08060134.1| histidine--tRNA ligase [Streptococcus cristatus ATCC 51100]
 gi|321269426|gb|EFX52359.1| histidine--tRNA ligase [Streptococcus cristatus ATCC 51100]
          Length = 426

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/402 (13%), Positives = 111/402 (27%), Gaps = 25/402 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    R+   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYLEEFARKTFKKYNYAEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P   Y +   FR E        R REF       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKLYYMGSMFRYERPQAG---RLREFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-----TGETQ 220
               +            + F  +G+  + ++  S       +     L D          
Sbjct: 137 ENPATDAE---TIAMAAQFFKEIGIGQVTLQLNSLGNAASRAAYRQALIDYLTPLKDSLS 193

Query: 221 VFCSKDFMDFPIPSENTDFDDIIS--------LNSIVEQWTAPYAATSDVHNEKLFDSLP 272
               +   + P+   ++   +  +        L+ + E+    +AA   +        + 
Sbjct: 194 KDSQRRLEENPLRVLDSKEKEDKAAVAQAPSILDFLDEESQEHFAAVRSMLESLGVPYVI 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               V         IF F T  +         A G+   +     G         +    
Sbjct: 254 NTNMVRGLDYYNHTIFEFTTDVAGSELT--ICAGGRYDGLVDYFGGPETPAFGFGMGMER 311

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                     ++         I    +    +  ++   L   G     D +  ++ +QF
Sbjct: 312 LLLILEKQGAALPFETGLDAYIAVLGEAANRSALELVQALRNQGFAAERDYLDRKLKAQF 371

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             AD       + +G   +  ++V +K+  T     + L +V
Sbjct: 372 KSADAFRAKTIITLGESEIESNQVTVKNNETRQEVVVGLNQV 413


>gi|296875422|ref|ZP_06899496.1| histidine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
 gi|296433615|gb|EFH19388.1| histidine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
          Length = 430

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/410 (15%), Positives = 116/410 (28%), Gaps = 23/410 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   R    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 23  WQYVEGFARKVFARYHYDEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 82

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P  FY I   FR E        R R+F       F  
Sbjct: 83  PEGTAPVVRSYVENKLFAPEVQKPSKFYYIGPMFRYERPQAG---RLRQFHQIGVECFGS 139

Query: 165 LTPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             P     +              + +   + LG  +         I   L  +  +  D+
Sbjct: 140 SNPATDVETIAMAAQFLKELGIDNVILHLNTLGSPASRQAYRQALIDYLLPMKDQLSKDS 199

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +    +   S+ + + E+  A + A   +  +     + +  
Sbjct: 200 QRRLEENPLRVLDSKEKEDKAAVEQAPSILDYLDEESQAHFDAVRRMLEDLGVAYVIDTN 259

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+       T   A G+   +     G         +       
Sbjct: 260 MVRGLDYYNHTIFEFITEI-EGNELTV-CAGGRYDGLVEYFGGPATAGFGFGIGVERILL 317

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +         I        +A   +   L   G     D +G ++ +QF  A
Sbjct: 318 VLEKKGIELPIETGLDAYIAVLGDEVNEAALSLVQALRIQGFKAERDYLGRKLKAQFKSA 377

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE----EVINYASHR 441
           D+      + +GS  V   +V +K+  T     ++LE    +  +  +  
Sbjct: 378 DVFAAKALITLGSSEVESGQVTVKNNQTRQEVTVALESLKKDFPSVLAEL 427


>gi|77460821|ref|YP_350328.1| histidyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
 gi|123603394|sp|Q3K7B7|SYH_PSEPF RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|77384824|gb|ABA76337.1| Histidyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
          Length = 429

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/427 (12%), Positives = 113/427 (26%), Gaps = 38/427 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP            +    +  G  ++ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPVWRYFEGTVSRLLDNYGYKQIRMPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H  +        + I   FR E RP+ G  R    
Sbjct: 70  FEDRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHE-RPQKGRYRQFHQ 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           +  + ++ D     ++       +             +     S         E +V   
Sbjct: 129 IGLEVFNLDGPDIDAELIIMTWRLWGELGIRDAVKLELNSLGTSES--RGRYREALVEYL 186

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDII------------SLNSIVEQWTAPYAATSDVH 263
           +                                       +     E         + + 
Sbjct: 187 SAHHDKLDEDSQRRLKTNPLRVLDTKNADTQAVLVDAPKMADYLDDESRAHFKGLKARLD 246

Query: 264 NE----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
                  L   L       ++ +        G + ++     + G              +
Sbjct: 247 AVGIPYVLNPKLVRGLDYYSKTVFEWVTDKLGAQGTVCAGGRYDGLVEQMGGKPTPGVGF 306

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC-RDACEKIYARLSKVG 376
            +G  R     +    +    I  +      + L       ++      E++  +L  + 
Sbjct: 307 AMGIER-----LVLLLETLEQIPEEISRQVDVYLCAFGEEAELAGLALAERVRDQLPNLR 361

Query: 377 CDVFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLE 432
             V         G   SQF  AD  G    +I+G   ++   V  K  R  G ++ ++ +
Sbjct: 362 LQV-----NAGAGSFKSQFKKADKSGALYALILGDDEMAQQVVGFKPLRGQGEQQSIAWD 416

Query: 433 EVINYAS 439
            +  + +
Sbjct: 417 ALAAHLA 423


>gi|33593202|ref|NP_880846.1| histidyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|33563577|emb|CAE42476.1| histidyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|332382613|gb|AEE67460.1| histidyl-tRNA synthetase [Bordetella pertussis CS]
          Length = 434

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/428 (14%), Positives = 114/428 (26%), Gaps = 23/428 (5%)

Query: 32  IHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-D 87
             + S   G+   LP      +    I+R      G   +  P L+   L+    G   D
Sbjct: 11  FQKVSAIRGMNDVLPGPSARWEKFEEIVRGWLRSYGYRNVRTPVLEHTRLFARGIGEVTD 70

Query: 88  SYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
              KEM    D  +   +   P     +      H   Y   P   Y I   FR E   R
Sbjct: 71  IVEKEMYTFTDALNGDSLTMRPEMTAGIVRASIEHNMLYDR-PHRVYAIGPVFRHERPQR 129

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
               +  +  ++         +             L +       +   +          
Sbjct: 130 GRYRQFHQIDVEALGFAGPDVDAEMIVMLARLWKLLGLQDVRLELNSLGQPAERAAHRAA 189

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E +        +    +     P+   +T    +  +     +        S  H + 
Sbjct: 190 LIEHLERHQDVLDED-GRRRMYSNPLRVLDTKNPAMQEMADSAPRLFDFLGEASRSHFDG 248

Query: 267 LFDSLPENKRVSA------RGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           L   L +            RG++     +F + T     + A      G  +   +   G
Sbjct: 249 LCQRLADAGIEYRLNPRLVRGLDYYNLTVFEWVTD---RLGAQGTVCGGGRYDGLVELLG 305

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                 V   I              +       + I    +  +    ++  +L   G D
Sbjct: 306 GKPTPAVGFAIGMERLLDLWEQSVEIEQPAECEVYIVHQGEEGQRLAARVGEQLRDAGLD 365

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIREDMSLEE 433
           V          +QF  AD  G  + VI+G   V+     IKH          ++ + L +
Sbjct: 366 VIVHAGAAGFKAQFKRADASGARIAVILGGDEVASRTASIKHLRGPVGADAAQQQVPLAQ 425

Query: 434 VINYASHR 441
           + +    +
Sbjct: 426 LADVLKSK 433


>gi|253743717|gb|EET00043.1| Glycyl-tRNA synthetase [Giardia intestinalis ATCC 50581]
          Length = 621

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 6/142 (4%)

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA------HDQ 359
            G+     +     G  R++ +++E S   +      +V  FK  L+  KA       + 
Sbjct: 457 HGETIVPHVIEPSFGVGRILYSILEHSFYTRDTDGQRTVFRFKPYLVGCKAIVLPLQRND 516

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                   I  RL   G     D  G  IG ++A AD +G P  V +  + + D  V I+
Sbjct: 517 DLMSTSSSILERLRCSGIAAKQDASGAIIGKRYARADEIGIPFAVTIDFQTLEDGSVTIR 576

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R +  +  +  +++    ++ 
Sbjct: 577 ERDSMSQIRVDSKQISQVIANL 598



 Score = 42.0 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 7/84 (8%)

Query: 26  MLRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSAD 78
           ++R   I           G+Y   P   +  +N  ++ R+        +E+    +    
Sbjct: 10  LIRRFFIVPAFEIYGGVAGLYDLGPSATELRNNFLSLWRQHFIVAEDMLEIMCTNIVPDK 69

Query: 79  LWVESGRYDSYGKEMLRLADRNDK 102
           +   SG    +   M++     + 
Sbjct: 70  VLQASGHVARFADVMVKDTKNGEC 93


>gi|189499373|ref|YP_001958843.1| histidyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
 gi|229558645|sp|B3ELN3|SYH_CHLPB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189494814|gb|ACE03362.1| histidyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
          Length = 434

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/413 (13%), Positives = 119/413 (28%), Gaps = 34/413 (8%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLA-DRNDKAMIY 106
              +  +I       G  E+  P  +  DL+  S     D  GKEM     + + +++  
Sbjct: 21  WKYIEGVIHRVVGLYGFQEIRTPVFEYTDLFQRSIGSTTDIVGKEMFSFRPEPDGRSVTL 80

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +   F     S  +     Y I   FR E        R R+F    A     +
Sbjct: 81  RPEMTAGVMRAFLQANLSSASPVHKLYYIAELFRKERPQAG---RQRQFSQFGAEMLGAS 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLG---LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
              +      M +         G     +     +      D    ++    +G      
Sbjct: 138 SPEAVAEVIDMMMQVFTSLGVSGLRLRINTLGDLDDRVRYRDALRAYLEPH-SGLLDAPS 196

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD--------VHNEKLFDSLPENK 275
            +     P+   ++   DI S+ +   +       ++           ++K  + + +  
Sbjct: 197 RERLEKNPLRILDSKNPDIQSVIADAPKLHDFLNPSARAEFDQVLLYLDQKSIEYVIDPL 256

Query: 276 RVSARGIEVGHIFY-----FGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAA 327
            V          F       G + ++     + G     G    +    + +G  R++  
Sbjct: 257 LVRGLDYYCHTAFEVVSPELGAQDAIGGGGRYDGLARELGSKSDIPAVGFAVGMERLLIT 316

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           + +       +     V         I   ++  +         L + G     D  G  
Sbjct: 317 MEKQGLLRHIVPSGPRVY--------IVLQNEELKTHALSACDLLRRSGIRTEMDLCGRS 368

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           + +Q   A+       + VG   V      +K+  T  ++ +S+ E+I   + 
Sbjct: 369 MKAQMREANRQHADYALFVGKSEVESQAYGLKNLRTSEQDFLSIREMIARLAS 421


>gi|269217251|ref|ZP_06161105.1| histidine--tRNA ligase [Slackia exigua ATCC 700122]
 gi|269129388|gb|EEZ60473.1| histidine--tRNA ligase [Slackia exigua ATCC 700122]
          Length = 454

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/431 (14%), Positives = 121/431 (28%), Gaps = 43/431 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--------------- 82
           G    LP   +   +   +     +  G   M  P  +  +++                 
Sbjct: 8   GTVDLLPGAARHWRHAQDVAARLFSAYGYDFMETPIFEQTEVFTRGIGEATDVVNKEMFV 67

Query: 83  --SGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQ 136
             SG  ++Y + +    D   +    +   P     +      H        P   Y   
Sbjct: 68  VRSG--ENYRRSLEAGTDAGLKGKSRLSLRPEGTAGVVRAVVQHNLVEQGATPAKLYYAG 125

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
             FR E   +    R REF    A     T   +      M +  +R + ++G+ +  M 
Sbjct: 126 PMFRAERPQKG---RLREFHQIGAECLGSTEPTADAE---MIIMLVRFYEKMGIPASDMT 179

Query: 197 AESGPIGGDLSH-------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                +G +             +L+   E    C +     P+ + +        + +  
Sbjct: 180 LYVNSMGDERCRPAYRAMVRDHILSHADEMCEECRRRADANPLRAFDCKNAACAHVMASA 239

Query: 250 EQWTAPYAATSDVHNEKLFDSLP------ENKRVSARGIEVGHIFYFGTKYSLPMSA-TF 302
            + T         H E +   L       E      RG++      F  + +   +A   
Sbjct: 240 PRITDHLCDDCRSHYEAVKSYLDVAGIAYEEDPTLVRGLDYYTRTVFEVQSNAIDAAQNA 299

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G  G+   +     G     +  A+                       + +   D   R
Sbjct: 300 IGGGGRYDKLAETVGGRPTPGLGFALGYERVMLALEASGALAEASPYVDLYVACVDATVR 359

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                +       G  V  D  G+ + SQF  A  +     ++VG   +   +V ++  +
Sbjct: 360 SVAFDLVRTARDAGLRVEMDHQGKSLKSQFKAAGKMNARKVIVVGPDELEHGQVVVRDMV 419

Query: 423 TGIREDMSLEE 433
           T      S+E+
Sbjct: 420 THEERTASIEQ 430


>gi|218884522|ref|YP_002428904.1| histidyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
 gi|218766138|gb|ACL11537.1| histidyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
          Length = 440

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 67/432 (15%), Positives = 135/432 (31%), Gaps = 49/432 (11%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEML 94
           P G +          + +  + +E   R G   +  PT++   L+  +SG  +   + M 
Sbjct: 10  PRGMRDLTGVDAELHEYMVELFKETARRNGFKPIITPTVEYFRLFEKKSG--EEIKRSMY 67

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+  + +   P     +   +   ++S       +Y  Q    +E +      R RE
Sbjct: 68  VFQDKAGRTLALRPEVTASVVRAYLKEMRSQPKPIRLYYVAQCFRYEEPQ----KARYRE 123

Query: 155 FLMKDAYSFDLTPEG------------------SKHSYNKMFVSYLRIFHRLGLKSIPMR 196
           F                                  +       +Y  I  R+G+      
Sbjct: 124 FWQGGLEIIGDPDINADVSAAFTASNFLEELGVKHYYVVGNVATYRVIMDRIGIPEETQD 183

Query: 197 AESGPIGGDLSHEFIV---LADTGETQVFCSKDFMDFPIPSENTDFDDIISL---NSIVE 250
                I  D   E +       + E  V      ++  I    +   D   L    SI+E
Sbjct: 184 LVLHLIDKDRVGEALQVLRDKTSREDIVELFGRLLNSGIDEALSVIMDFKGLGEGYSIIE 243

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A      ++ N+  F++  E K V       G IF + T   L +S       G   
Sbjct: 244 SELAKTREFIELLNQVGFNAAYEPKLVRGLAYYTGLIFEYKTSGGLSVSI------GGGG 297

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                +   G     +  +    D   ++          + + I   + V   A  ++  
Sbjct: 298 RYDGLTRVYGGEYEYSTGLALGLDRIMLLLDPGKILPSKTTVLISILEGVPLKAGYELVR 357

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           R+   G +V        +    ++A+ +   L VI+G +      + +K+ +TG ++ + 
Sbjct: 358 RIRVKGVEVIP-YRARSLSKALSLANKINAGLVVIIGRREYESGSITVKNMITGEQKYIG 416

Query: 431 LEE---VINYAS 439
           L +    ++Y  
Sbjct: 417 LNDINAFLDYIK 428


>gi|312139505|ref|YP_004006841.1| histidine-tRNA ligase hiss [Rhodococcus equi 103S]
 gi|311888844|emb|CBH48156.1| histidine-tRNA ligase HisS [Rhodococcus equi 103S]
          Length = 426

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 64/400 (16%), Positives = 121/400 (30%), Gaps = 33/400 (8%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   + +P  +   L+        D   KEM   ADR D+++   P     +      H
Sbjct: 40  AGYGHIELPIFEDTGLFARGVGESTDVVSKEMYTFADRGDRSVTLRPEGTAGVMRAVIEH 99

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                 LP         FR E RP+ G  R  +  +         P             +
Sbjct: 100 GLDRGQLPVKLSYAGPFFRYE-RPQAGRYRQLQ-QVGVEAIGVDDPALDAEVIAIADAGF 157

Query: 182 LRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVFCSK----DFMDFPIPSE 235
             +        I    +    P   +   EF+   D  E     ++      +D   P  
Sbjct: 158 RSLGLDGFRLEITSLGDDTCRPQYRERLQEFLFGLDLDEDTRRRAEINPLRVLDDKRPHV 217

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFY---- 289
                D   +   + +    +      H + L      N R+  RG++      F     
Sbjct: 218 REMTADAPLMLDHLSESAKAHFDEVLAHLDALGVPYVVNPRM-VRGLDYYTKTTFEFVHD 276

Query: 290 -FGTKYSLPMSATFKGADGK--DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
             G +  +     + G   +     +    YG+G  R + A+              +   
Sbjct: 277 GLGAQSGIGGGGRYDGLMAQLGGQPLSGIGYGLGVDRTILALAAEGKSAG----NPARCE 332

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQV 404
                +   A  ++      KI   L   G  V   + D G + GS    AD  G  + +
Sbjct: 333 VFGVPLGAAAKTEMV-----KIAHALRAAGIRVDMVYGDRGIK-GSM-KAADRSGARIAL 385

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++G + ++   + +K    G +  +++E V+       ++
Sbjct: 386 VLGDEDLAAGTIAVKDLSNGEQTSVAMEGVVAQIGSILAD 425


>gi|190348873|gb|EDK41420.2| hypothetical protein PGUG_05518 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 651

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G         V        D   +  P +VAP K+ L+ + +H        +K+ A L K
Sbjct: 502 GRIIYSIFEHVFWSRPEDKDRCVLSLPPAVAPTKVLLVPLSSH-ADLSPIVKKVSAYLRK 560

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
                  DD    IG ++A  D LG P  + +    V D+ + ++ R +  +   SLE+V
Sbjct: 561 EQIPFKVDDSSASIGKRYARNDELGTPFGITIDFDSVKDASITLRERDSTKQVRGSLEDV 620

Query: 435 INYAS 439
           +    
Sbjct: 621 VAAIK 625



 Score = 53.2 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     N+    R+        +E+    L   ++   SG  D +   M R
Sbjct: 33 SGLYDYGPPGCALQANIIDTWRKHFILEEDMLEVDTTMLTPHEVLKTSGHVDKFADWMCR 92


>gi|146317934|ref|YP_001197646.1| histidyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|146320120|ref|YP_001199831.1| histidyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|253751159|ref|YP_003024300.1| histidyl-tRNA synthetase [Streptococcus suis SC84]
 gi|253753060|ref|YP_003026200.1| histidyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|253754883|ref|YP_003028023.1| histidyl-tRNA synthetase [Streptococcus suis BM407]
 gi|166228620|sp|A4VZ92|SYH_STRS2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166228622|sp|A4VT07|SYH_STRSY RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|145688740|gb|ABP89246.1| Histidyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|145690926|gb|ABP91431.1| Histidyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|251815448|emb|CAZ51026.1| histidyl-tRNA synthetase [Streptococcus suis SC84]
 gi|251817347|emb|CAZ55082.1| histidyl-tRNA synthetase [Streptococcus suis BM407]
 gi|251819305|emb|CAR44645.1| histidyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|292557718|gb|ADE30719.1| Histidyl-tRNA synthetase, class IIa [Streptococcus suis GZ1]
          Length = 427

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 59/420 (14%), Positives = 118/420 (28%), Gaps = 38/420 (9%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R    +    E+  P  +  ++   S     D   KEM    D+ ++ +   
Sbjct: 20  WQYVENFTRSIFKQYNYAEIRTPIFEHYEVISRSVGDTTDIVTKEMYDFYDKGERHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P  FY +   FR E        R R+F       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPAKFYYMGPMFRYERPQAG---RLRQFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD-----TGETQ 220
               +     +        F  LG+K I +   S       +     L D       +  
Sbjct: 137 NNPATD---VETIAMAYHFFEELGIKDIRLHLNSLGNPESRAAYRQALIDYLTPLKEQLS 193

Query: 221 VFCSKDFMDFPIPSENTDFDDII--------SLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
               +   + P+   ++   +           L+ + E+ T  + A   + +        
Sbjct: 194 KDSQRRLEENPLRVLDSKEKEDKVAVENAPSILDYLDEESTVHFEAVRSMLDNLGITYTI 253

Query: 273 ENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           +   V         IF F     G   ++     + G        +  ++G G       
Sbjct: 254 DTNMVRGLDYYNHTIFEFMTEVGGNDLTICAGGRYDGLVTYFGGPETPAFGFGMGIERLI 313

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           ++              +       + I    Q        +   + K G     D +  +
Sbjct: 314 LVL-------EKQGIELPLDTQLDVYIAVLGQEANGGALDLVQAIRKQGFRAERDYLDRK 366

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV---INYASHRFSN 444
           + +QF  AD+ G    + +G   +   +V +K+  T  + + SLE +             
Sbjct: 367 LKAQFKSADVFGAKAIITLGGSEIESGQVVVKNNQTRSQVETSLEALKTDFASILEELEK 426


>gi|146413054|ref|XP_001482498.1| hypothetical protein PGUG_05518 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 651

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G         V        D   +  P +VAP K+ L+ + +H        +K+ A L K
Sbjct: 502 GRIIYSIFEHVFWSRPEDKDRCVLSLPPAVAPTKVLLVPLSSH-ADLSPIVKKVSAYLRK 560

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
                  DD    IG ++A  D LG P  + +    V D+ + ++ R +  +   SLE+V
Sbjct: 561 EQIPFKVDDSSASIGKRYARNDELGTPFGITIDFDSVKDASITLRERDSTKQVRGSLEDV 620

Query: 435 INYAS 439
           +    
Sbjct: 621 VAAIK 625



 Score = 53.2 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     N+    R+        +E+    L   ++   SG  D +   M R
Sbjct: 33 SGLYDYGPPGCALQANIIDTWRKHFILEEDMLEVDTTMLTPHEVLKTSGHVDKFADWMCR 92


>gi|33602151|ref|NP_889711.1| histidyl-tRNA synthetase [Bordetella bronchiseptica RB50]
 gi|39932137|sp|Q7WHN1|SYH_BORBR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46397794|sp|Q7W6P7|SYH_BORPA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|33576589|emb|CAE33667.1| histidyl-tRNA synthetase [Bordetella bronchiseptica RB50]
          Length = 428

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/428 (14%), Positives = 114/428 (26%), Gaps = 23/428 (5%)

Query: 32  IHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-D 87
             + S   G+   LP      +    I+R      G   +  P L+   L+    G   D
Sbjct: 5   FQKVSAIRGMNDVLPGPSARWEKFEEIVRGWLRSYGYRNVRTPVLEHTRLFARGIGEVTD 64

Query: 88  SYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
              KEM    D  +   +   P     +      H   Y   P   Y I   FR E   R
Sbjct: 65  IVEKEMYTFTDALNGDSLTMRPEMTAGIVRASIEHNMLYDR-PHRVYAIGPVFRHERPQR 123

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
               +  +  ++         +             L +       +   +          
Sbjct: 124 GRYRQFHQIDVEALGFAGPDVDAEMIVMLARLWKLLGLQDVRLELNSLGQPAERAAHRAA 183

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E +        +    +     P+   +T    +  +     +        S  H + 
Sbjct: 184 LIEHLERHQDILDED-GRRRMYSNPLRVLDTKNPAMQEMADSAPRLFDFLGEESRSHFDG 242

Query: 267 LFDSLPENKRVSA------RGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           L   L +            RG++     +F + T     + A      G  +   +   G
Sbjct: 243 LCQRLADAGIEYRLNPRLVRGLDYYNLTVFEWVTD---RLGAQGTVCGGGRYDGLVELLG 299

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                 V   I              +       + I    +  +    ++  +L   G D
Sbjct: 300 GKPAPAVGFAIGMERLLDLWEQSVEIEQPAECEVYIVHQGEEGQRLAARVGEQLRDAGLD 359

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIREDMSLEE 433
           V          +QF  AD  G  + VI+G   V+     IKH          ++ + L +
Sbjct: 360 VIVHAGAAGFKAQFKRADASGARIAVILGGDEVASRTASIKHLRGPVGADAAQQQVPLAQ 419

Query: 434 VINYASHR 441
           + +    +
Sbjct: 420 LADVLKSK 427


>gi|154274019|ref|XP_001537861.1| hypothetical protein HCAG_07283 [Ajellomyces capsulatus NAm1]
 gi|150415469|gb|EDN10822.1| hypothetical protein HCAG_07283 [Ajellomyces capsulatus NAm1]
          Length = 551

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 70/170 (41%), Gaps = 6/170 (3%)

Query: 23  HKLMLRTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LW 80
            +++L+  M+  +   G +   P      + +     +   + G    S P   S D L 
Sbjct: 80  QQVLLKGQMLDYYDVSGCFILKPHSYFIWETIQNWFDDRIKKMGVKNCSFPLFVSEDVLK 139

Query: 81  VESGRYDSYGKEMLRLAD----RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
            E    + +  E+  +      + ++ +   PT E VM   +   I+S+R+LP    Q  
Sbjct: 140 KEKDHIEGFAAEVAWVTHAGNSKLERKIAIRPTSETVMYPYYAKWIRSHRDLPLRLNQWN 199

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
              R E +     +R+REFL ++ ++  LT  G++    ++   Y  ++ 
Sbjct: 200 SVVRWEFKNPQPFLRTREFLWQEGHTAHLTEGGAREEVLQILEHYAHVYE 249


>gi|107029010|ref|YP_626105.1| histidyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
 gi|116689832|ref|YP_835455.1| histidyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
 gi|123179919|sp|Q1BGX3|SYH_BURCA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166227947|sp|A0K7T5|SYH_BURCH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|105898174|gb|ABF81132.1| histidyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
 gi|116647921|gb|ABK08562.1| histidyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
          Length = 446

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/431 (13%), Positives = 104/431 (24%), Gaps = 39/431 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + I   FR E   R    R R+F
Sbjct: 76  FTDALNGENLTMRPENTAAVVRASIEHNMLYDGPKRLWYIGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 TGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-------- 265
                +     +     P+   +T    +  +     +        S  H E        
Sbjct: 193 QFADVLDEDAKRRLYTNPLRVLDTKNPALQDIAQNAPKLIDFLGDESRAHFEGLQRLLLA 252

Query: 266 -----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                K+   L          +        G + ++     +     +       + G  
Sbjct: 253 NNIPFKINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWA 312

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                   +    D         V                 R+       RL   G DV 
Sbjct: 313 MGIERILELLKEEDLAPEQEGVDVYVVHQG--------DTAREQAFIAAERLRDTGLDVI 364

Query: 381 W----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-------GIREDM 429
           +    D       SQ   AD  G    VI G + V++  V +K            +++ +
Sbjct: 365 FHCSADGAPASFKSQMKRADASGAAFAVIFGEEEVANGTVGVKALRGAGAEGEKNVQQTV 424

Query: 430 SLEEVINYASH 440
            +E +  +  +
Sbjct: 425 PVESLTEFLIN 435


>gi|222480629|ref|YP_002566866.1| histidyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
 gi|254782332|sp|B9LRS2|SYH_HALLT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|222453531|gb|ACM57796.1| histidyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
          Length = 442

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 75/432 (17%), Positives = 138/432 (31%), Gaps = 52/432 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P  Q A   V   I +  +R G  E++ P L+  +++  +SG  +   +E+   
Sbjct: 7   GFRDFYPGEQSARREVTDAIEDAASRYGFREIATPALERTEMYVDKSG--EEIVEELYAF 64

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +  +  +  +   + P  +   +  +R E   +    R REF 
Sbjct: 65  EDKGGRGVSMTPELTPTVARMVVAKGQ-ELSKPIKWMSTRPFWRYEQVQQG---RFREFY 120

Query: 157 MKDAYSFDLTPEGSKHSY--------------NKMFVSYLRIFHRLGLKSIPMRAESGPI 202
             +   F  +   +                  N  F   +     LG     + A+   +
Sbjct: 121 QTNIDVFGSSAPEADAEVLAVAADALTDLGLTNDDFEFRVSHRDILGGLVRALAADPDAV 180

Query: 203 GGDLSHEFI---VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---PY 256
               +   +      D GE     S   +D     E   FDD+IS    V+   A     
Sbjct: 181 DTKAAIRAVDKRAKVDDGEYLGLLSDAGLDRATAQE---FDDLISDVETVDDLDAVAEAG 237

Query: 257 AATSDVHNEKLFDSL-----------PENKRVSARGIEV--GHIFYFGTKYSLPMSATFK 303
               +   E L + L            E    +ARG++   G +F           + F 
Sbjct: 238 GEDVEAAVENLRNVLAAADDFGAGAFCEVSLTTARGLDYYTGVVFECFDSTGEVSRSVFG 297

Query: 304 GADGKDHYVQMGSYGIGAMRVV--AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           G    D     G     A+ V    A +       G+   + +      L       +  
Sbjct: 298 GGRYDDLIESFGGQPTPAVGVAPGHAPLSLLCQRAGVWPDEELTTDYYVLSVGDTRSE-- 355

Query: 362 RDACEKIYARLSKVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                 +   L  +G DV    D  G   G+Q   AD +     V+VG + + + +  +K
Sbjct: 356 ---ATALARDLRALGDDVVVEQDVSGRSFGAQLGYADSINAETVVVVGERDLENGEYTVK 412

Query: 420 HRLTGIREDMSL 431
              +G    + +
Sbjct: 413 DMASGDETTVPV 424


>gi|50287985|ref|XP_446421.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525729|emb|CAG59348.1| unnamed protein product [Candida glabrata]
          Length = 663

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 81/286 (28%), Gaps = 13/286 (4%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                     +         F     +                 +  + + E +V+    
Sbjct: 363 MANEMAHYAADCWDAELKTSFGWIECVGCADRSAY------DLTVHANKTKEKLVVRQKL 416

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE---N 274
           ET V  +K  +D    ++             VE +    +        +   +  +    
Sbjct: 417 ETPVEVTKYEIDL---TKKLFGPKFRKDAPKVEAYLTELSQEELEKKAEELKTNGKIVFT 473

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            +     IE+   F    K +          +  +    +G                   
Sbjct: 474 VKGIEGEIELDDKFVVIEKRTKVEHVREFVPNVIEPSFGIGRIIYSIFEHSFWSRPEDTA 533

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
              + +P  VAP K+ L+ +  H  +      ++   L K       DD G  IG ++A 
Sbjct: 534 RAVLSFPPLVAPTKVLLVPLSNHKDLAPVTA-QVSKILRKEQIAFRVDDSGVSIGKRYAR 592

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D LG P  + +    V D  V ++ R +  +   S+E VI     
Sbjct: 593 NDELGTPFGITIDFDSVKDGSVTLRERDSTKQVRGSVEAVIKAVRE 638



 Score = 46.7 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 13/99 (13%)

Query: 10  ILQENP--RDAEIASHKLM---LRTGMIHQHS-------KGIYSWLPLGQKALDNVNAII 57
            +++    R A   S + +   LR    +  +        G+Y + P G     NV    
Sbjct: 2   TVEDVKQARQAVEFSREKLESVLRGRFFYAPAFDLYGGVSGLYDYGPPGCSFQANVVDQW 61

Query: 58  REEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           R+        +E+    L   ++   SG  D +   M R
Sbjct: 62  RKHFILEEDMLEVDCTMLTPYEVLKTSGHVDKFSDWMCR 100


>gi|148359078|ref|YP_001250285.1| histidyl tRNA synthetase [Legionella pneumophila str. Corby]
 gi|148280851|gb|ABQ54939.1| histidyl tRNA synthetase [Legionella pneumophila str. Corby]
          Length = 425

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/428 (14%), Positives = 121/428 (28%), Gaps = 18/428 (4%)

Query: 31  MIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY- 86
           M+ +     G+   LP        +         R G  E+  P +++  L+  + G   
Sbjct: 1   MVDKIQAIRGMNDVLPDSTSVWRFIEQTFINCLVRYGYKEIRFPIVENTQLFKRTIGEIT 60

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D   KEM    D N  ++   P            H   +      +Y     FR E   +
Sbjct: 61  DIVEKEMYTFNDLNGDSITLRPEGTAGCVRACIEHGLLHNQQQKLWYL-GPMFRHERPQK 119

Query: 147 FGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
               +  +F ++                  +++             +             
Sbjct: 120 GRYRQFNQFGVEALGITGTAIELELISICRRLWADLGFSQSVQLQVNSLGEINERQKYRS 179

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           +  E++        +    +     P+   ++   D+  L     +        S  H +
Sbjct: 180 ILVEYLRDHFHILDED-SKRRLDKNPLRVLDSKNPDLQQLIQNAPKLIDVLGDDSKEHFQ 238

Query: 266 KLFDSLP------ENKRVSARGIE-VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
              + L           V  RG++  G   +      L   AT       D  V+     
Sbjct: 239 SFCNGLETLGIPYSINPVLVRGLDYYGQTVFEWVTDQLGSQATICAGGRYDMLVEFLGGA 298

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG-- 376
                  A  +E        +   + +  K S+  I  +++        +   +      
Sbjct: 299 PTPAVGFALGLERIFLLMETLNLLNESNNKQSIFIIATNEEAIL-KALVMAESIRNAHPS 357

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVI 435
            DV  +  G    SQF  AD  G  L +I+G   ++   V IK   T   +  + + ++ 
Sbjct: 358 LDVITNTAGGGFKSQFKKADKSGARLALILGEDEIAREYVSIKDLRTEIEQISIPMTKIN 417

Query: 436 NYASHRFS 443
            +     +
Sbjct: 418 EFLQDYLA 425


>gi|296107126|ref|YP_003618826.1| histidyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
 gi|295649027|gb|ADG24874.1| histidyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
          Length = 426

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 59/419 (14%), Positives = 118/419 (28%), Gaps = 16/419 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        +         R G  E+  P +++  L+  + G   D   KEM  
Sbjct: 11  GMNDVLPDSTSVWRFIEQTFINCLVRYGYKEIRFPIVENTQLFKRTIGEITDIVEKEMYT 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D N  ++   P            H   +      +Y     FR E   +    +  +F
Sbjct: 71  FNDLNGDSITLRPEGTAGCVRACIEHGLLHNQQQKLWYL-GPMFRHERPQKGRYRQFNQF 129

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            ++                  +++             +             +  E++   
Sbjct: 130 GVEALGITGTAIELELISICRRLWADLGFSQSVQLQVNSLGEINERQKYRSILVEYLRDH 189

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP-- 272
                +    +     P+   ++   D+  L     +        S  H +   + L   
Sbjct: 190 FHILDED-SKRRLDKNPLRVLDSKNPDLQQLIQNAPKLIDVLGDDSKEHFQSFCNGLETL 248

Query: 273 ----ENKRVSARGIE-VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                   V  RG++  G   +      L   AT       D  V+            A 
Sbjct: 249 GIPYSINPVLVRGLDYYGQTVFEWVTDQLGSQATICAGGRYDMLVEFLGGAPTPAVGFAL 308

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDDMG 385
            +E        +   + +  K S+  I  +++        +   +       DV  +  G
Sbjct: 309 GLERIFLLMETLNLLNESNNKQSIFIIATNEEAIL-KALVMAESIRNAHPSLDVITNTAG 367

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRFS 443
               SQF  AD  G  L +I+G   ++   V IK   T   +  + + ++  +     +
Sbjct: 368 GGFKSQFKKADKSGARLALILGEDEIAREYVSIKDLRTEIEQISIPMTKINEFLQDYLA 426


>gi|158520686|ref|YP_001528556.1| histidyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
 gi|229558655|sp|A8ZUR6|SYH_DESOH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|158509512|gb|ABW66479.1| histidyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
          Length = 423

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/414 (13%), Positives = 106/414 (25%), Gaps = 26/414 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  +        G  E+  P ++  +L+  S     D   KEM    DR    +   
Sbjct: 19  WRRIETLAAVTFGAFGFSEIRPPVMERTELFKRSIGEDTDIVEKEMYTFEDRGGDLVTLR 78

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF----------LM 157
           P     +   +  H           Y I   FR E   +    +  +            M
Sbjct: 79  PEATASVVRAYIQHKLYADTPVAKLYTIGPMFRRERPQKGRYRQFHQINAEAFGVAAPYM 138

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG--DLSHEFIVLAD 215
                F L    S        V    +       +   R  S   G   DL  +     D
Sbjct: 139 DAQLIFMLMILFSALGLKDTRVHINSLGCAQCRPAFKQRLLSFLEGRKADLCEDCTRRID 198

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
               +V   K      + +E     D +               T       +   L    
Sbjct: 199 RNPLRVLDCKVDRCRHVSAEAPQITDFLCPGCAAHFDEVTGLLTDLGVGFDIDKRLVRGL 258

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
               R          G + ++     +             + G          + +  + 
Sbjct: 259 DYYTRTTFEVQTDRLGAQSAIAGGGRYDDLVKLLGGPDQPAVGFAVGLERLVELVAMEET 318

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFA 393
              +            + I A  +  R         L++ G DV    ++ G +  SQ  
Sbjct: 319 VSDVAHLR--------LFIAALGERARRRAFGWMCELNRRGFDVEMSLEERGLK--SQMK 368

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
            AD       +IVG   +    + +++  T  ++++ L +V         N + 
Sbjct: 369 TADKWNASHVLIVGDAEMETGSLILRNMKTKAQQEIPLGDVPGALITMMDNRQE 422


>gi|281426201|ref|ZP_06257114.1| glycine--tRNA ligase [Prevotella oris F0302]
 gi|299141865|ref|ZP_07035000.1| glycine--tRNA ligase [Prevotella oris C735]
 gi|281399777|gb|EFB30608.1| glycine--tRNA ligase [Prevotella oris F0302]
 gi|298576716|gb|EFI48587.1| glycine--tRNA ligase [Prevotella oris C735]
          Length = 517

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 110/355 (30%), Gaps = 65/355 (18%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  E+  L+D+ ++  +   T + +  +           LPF   QI   FR+E+  R  
Sbjct: 198 FSTEVGSLSDQTNRIYLRPETAQGIFVNYLNVQKTGRMKLPFGICQIGKAFRNEIVARQF 257

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           V R REF   +   F   P      +       +     LG+     R           H
Sbjct: 258 VFRMREFEQMEMQFFCQ-PGTEMKWFEYWKKHRMAWHQALGMGKENYRFHD--------H 308

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E +       T +     F                            +     +H+   F
Sbjct: 309 EKLAHYANAATDIEFHMPF---------------------------GFKEVEGIHSRTDF 341

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     K                  +S      F     + +        IG  R+  +V
Sbjct: 342 DLSQHEK------------------FSGRSIKYFDPEKNESYTPYDVETSIGVDRMFLSV 383

Query: 329 IESSHD---------GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           +  S+             +  P+++AP K ++  +   D    +  ++I   L     + 
Sbjct: 384 LCHSYTEEKLENGETRIVLRLPEALAPVKCAVFPLDKKD-GLPELAQQIVDDLK-FHFNT 441

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            + D  + IG ++   D +G P  V V      D KV +++R T  +E + +  +
Sbjct: 442 HYGDPKDSIGKRYRRQDAVGTPFCVTVDHDTPKDHKVTLRYRDTMKQERVDINAL 496


>gi|254518949|ref|ZP_05131005.1| histidyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226912698|gb|EEH97899.1| histidyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 432

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/431 (14%), Positives = 142/431 (32%), Gaps = 44/431 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP+ Q+  +++   I +     G + +  P ++ A++ +     ++  +     
Sbjct: 12  PGFMELLPIEQRKFNDIVEKITKVYEENGCLPIDTPIIEKAEILLAKNAGETEKQVYAFQ 71

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
              N+ A+ +  T           +  +    P   YQI   +R E   R    R REF 
Sbjct: 72  KGSNNLALRFDLTVPFARYTSQYFNDLN---FPLKRYQIGKVYRGERNQRG---RYREFY 125

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             D           K+    +     + F  +GLK    +  +  I   L     + +  
Sbjct: 126 QCDVDIIGKDKLSIKND-ALVISLASKAFKSIGLKDYKFQISNRKILSALLSSLNIESSI 184

Query: 217 GETQVF---------CSKDFMDFPIPSE---------------NTDFDDIISLNSIVEQW 252
               +            K+ +D  +  E               +   +++  LN   E++
Sbjct: 185 DVMILIDKYDKIGEQTFKEELDKLVNKESAKIINKVININGSKDKVLEELELLNIQDEKF 244

Query: 253 T------APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           T           T +V      + +   K +       G +F      +    +   G  
Sbjct: 245 TLGLNELKEVTTTLEVLGVYDSEYIINLKIIRGLDYYTGTVFETLLINNEEYGSICSGGR 304

Query: 307 GKDHYVQMGS---YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             +      +    G+G    +  +     +   +      +  +  +I I         
Sbjct: 305 YDNLAENYTNNILPGVGISIGLTRLFFVLKEIGFVESYKLPSKVEYLIIPIGD----TLK 360

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            C ++Y +L++ G  V      +++  +   A+ L  P  +++G +  ++  + IK+ +T
Sbjct: 361 YCGEVYKKLTESGKAVEMYFEDDKLKKKLNYANKLEIPYVILLGEEEEANKSINIKNMIT 420

Query: 424 GIREDMSLEEV 434
           G +E +  E++
Sbjct: 421 GKQETLKFEDI 431


>gi|3845409|gb|AAC71652.1| glycyl tRNA synthetase [Homo sapiens]
          Length = 392

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 84/312 (26%), Gaps = 24/312 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 57  TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 116

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 117 RSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICD 176

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 177 ECYITEMEMLLNEKGEFTIETE-GKTFQLTKDMINVKRFQ-KTLYVEEVVPNVIEPSFGL 234

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 235 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRH 294

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 295 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISE 354

Query: 434 VINYASHRFSNN 445
           + +      + N
Sbjct: 355 LPSIVQDLANGN 366


>gi|33597411|ref|NP_885054.1| histidyl-tRNA synthetase [Bordetella parapertussis 12822]
 gi|33573838|emb|CAE38146.1| histidyl-tRNA synthetase [Bordetella parapertussis]
          Length = 434

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/428 (14%), Positives = 115/428 (26%), Gaps = 23/428 (5%)

Query: 32  IHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-D 87
             + S   G+   LP      +    I+R      G   +  P L+   L+    G   D
Sbjct: 11  FQKVSAIRGMNDVLPGPSARWEKFEEIVRGWLRSYGYRNVRTPVLEHTRLFARGIGEVTD 70

Query: 88  SYGKEMLRLADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
              KEM    D  N  ++   P     +      H   Y   P   Y I   FR E   R
Sbjct: 71  IVEKEMYTFTDALNGDSLTMRPEMTAGIVRASIEHNMLYDR-PHRVYAIGPVFRHERPQR 129

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
               +  +  ++         +             L +       +   +          
Sbjct: 130 GRYRQFHQIDVEALGFAGPDVDAEMIVMLARLWKLLGLQDVRLELNSLGQPAERAAHRAA 189

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
             E +        +    +     P+   +T    +  +     +        S  H + 
Sbjct: 190 LIEHLERHQDILDED-GRRRMYSNPLRVLDTKNPAMQEMADSAPRLFDFLGEESRSHFDG 248

Query: 267 LFDSLPENKRVSA------RGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           L   L +            RG++     +F + T     + A      G  +   +   G
Sbjct: 249 LCQRLADAGIEYRLNPRLVRGLDYYNLTVFEWVTD---RLGAQGTVCGGGRYDGLVELLG 305

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                 V   I              +       + I    +  +    ++  +L   G D
Sbjct: 306 GKPAPAVGFAIGMERLLDLWEQSVEIEQPAECEVYIVHQGEEGQRLAARVGEQLRDAGLD 365

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIREDMSLEE 433
           V          +QF  AD  G  + VI+G   V+     IKH          ++ + L +
Sbjct: 366 VIVHAGAAGFKAQFKRADASGARIAVILGGDEVASRTASIKHLRGPVGADAAQQQVPLAQ 425

Query: 434 VINYASHR 441
           + +    +
Sbjct: 426 LADVLKSK 433


>gi|255975491|ref|ZP_05426077.1| histidyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256961540|ref|ZP_05565711.1| histidyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|257079351|ref|ZP_05573712.1| histidyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|257090253|ref|ZP_05584614.1| histidyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|293384700|ref|ZP_06630555.1| histidine--tRNA ligase [Enterococcus faecalis R712]
 gi|293387400|ref|ZP_06631955.1| histidine--tRNA ligase [Enterococcus faecalis S613]
 gi|294779747|ref|ZP_06745134.1| histidine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|307268142|ref|ZP_07549529.1| histidyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307277693|ref|ZP_07558779.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|312902750|ref|ZP_07761954.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|312908314|ref|ZP_07767278.1| histidyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312910612|ref|ZP_07769454.1| histidyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|255968363|gb|EET98985.1| histidyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256952036|gb|EEU68668.1| histidyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256987381|gb|EEU74683.1| histidyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|256999065|gb|EEU85585.1| histidyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|291078007|gb|EFE15371.1| histidine--tRNA ligase [Enterococcus faecalis R712]
 gi|291083191|gb|EFE20154.1| histidine--tRNA ligase [Enterococcus faecalis S613]
 gi|294453121|gb|EFG21536.1| histidine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|295113236|emb|CBL31873.1| histidyl-tRNA synthetase [Enterococcus sp. 7L76]
 gi|306505572|gb|EFM74756.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|306515532|gb|EFM84060.1| histidyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|310625728|gb|EFQ09011.1| histidyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|310633804|gb|EFQ17087.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|311289160|gb|EFQ67716.1| histidyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|315161367|gb|EFU05384.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0645]
 gi|315576681|gb|EFU88872.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0630]
 gi|323481107|gb|ADX80546.1| histidyl-tRNA synthetase [Enterococcus faecalis 62]
 gi|329568729|gb|EGG50529.1| histidine--tRNA ligase [Enterococcus faecalis TX1467]
          Length = 433

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 108/396 (27%), Gaps = 11/396 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDIVSKEMYDFYDKGDRHVTLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  +         P+  Y +   FR E      + +  +  ++   S + 
Sbjct: 80  PEGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYERPQAGRLRQFHQIGVEAFGSENP 139

Query: 166 ------TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                                   + + LG K          I     H   +  D+   
Sbjct: 140 ALDVEIMAMALDFFKQLGIQQIKLVINSLGDKETRATYRQALIDYLEPHMAELSEDSQRR 199

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                   +D     +     +  S+ + + E   A + A +D+ +        ++  V 
Sbjct: 200 LHENPLRVLDSKDKKDKVIVAEAPSILDYLNEPSKAHFEAVTDMLDLLEIPYEIDSNMVR 259

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                   IF   ++     + +   A G+ + +     G         +          
Sbjct: 260 GLDYYTHTIFEIMSEAPKMGAQSTICAGGRYNGLVEELGGPDTPGFGFGMGIERVLLTME 319

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +         +         A  ++   +   G     D M  +  +QF  AD L
Sbjct: 320 AEEVVIPALSELDAYVVGIGSETNIAALQLVQSIRNFGFSADRDYMNRKPKAQFKTADKL 379

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              L + +G   +++  V +K   T   +   L  +
Sbjct: 380 QAKLVLTIGENELNEGIVNVKSMATREEKAFPLSAI 415


>gi|269126355|ref|YP_003299725.1| histidyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
 gi|268311313|gb|ACY97687.1| histidyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
          Length = 421

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/402 (14%), Positives = 117/402 (29%), Gaps = 31/402 (7%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           E+    G   + +   +   L+        D   KEM    DR  +++   P     +  
Sbjct: 31  EQARLAGYGYVELAVFEDTQLFKRGVGESTDVVTKEMYTFEDRGGRSITLRPEFTAGVLR 90

Query: 117 IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDLTPEGSKHSYN 175
               +    + LP   +     FR E   +    R R+F   D        P+    +  
Sbjct: 91  AVLEYGLHKQGLPVKVWTTGPAFRAERPQKG---RYRQFYQLDLEAIGSQDPQIDAETIA 147

Query: 176 KMFVSYLRIFHRLGLK--SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK----DFMD 229
             +  Y  +  R      +     E  P       EF+   D  E      +      +D
Sbjct: 148 IAWNWYQGLGLRQVRLLLNSLGCRECRPAYRTRLQEFLRGLDLDEATRARVEINPLRVLD 207

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
              P       D   +   +      +          +  +  +  R+  RG++      
Sbjct: 208 DKRPEVKAQLTDAPLMADHLCAACKAHHDKVRSLLADVGIAWTDEPRL-VRGLDYYTRTT 266

Query: 290 -------FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
                   G +  +     + G   D     +    +G+G  R + A+          + 
Sbjct: 267 YEFEHPLLGAQSGIGGGGRYDGLSEDIGGPPLPGIGFGLGLDRTLLAL------EAEGVQ 320

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
               +  ++  + +    +        + A L + G        G+ + S    AD  G 
Sbjct: 321 LPVPSRCQVFGVPLG---ETAEHKVFTLVAELRRAGIAADMAPAGKSLKSAMKSADRSGA 377

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              VI+G + ++    ++K   TG +  + L ++      R 
Sbjct: 378 AYAVIIGERDITAGSAQVKDLATGEQIAVPLTDLTATLLERI 419


>gi|118473178|ref|YP_887295.1| histidyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
 gi|118174465|gb|ABK75361.1| histidyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
          Length = 426

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 72/424 (16%), Positives = 131/424 (30%), Gaps = 33/424 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+  +LP        V   +     R G  ++ +P  +   L+        D   KEM  
Sbjct: 15  GVPDYLPPDSAQFVAVRDGLLSAARRAGYGDIELPIFEDTALFARGVGESTDVVSKEMYT 74

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR D+++   P     +      H      LP         FR E RP+ G  R  + 
Sbjct: 75  FADRGDRSVTLRPEGTAGVIRAVIQHRLDRGALPVKLCYSGPFFRYE-RPQAGRYRQLQ- 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
            +         P             +  +        I    +    P   +L  EF+  
Sbjct: 133 QVGVEAIGVDDPALDAEVIAVADAGFRSLGLSGFRLEITSLGDDTCRPAYRELLQEFLFK 192

Query: 214 ADTGETQVFCSK----DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            D  E     ++      +D   P       D   +   +      +  T   + + L  
Sbjct: 193 LDLDEETRRRAEINPLRVLDDKRPHVREMTADAPLMLDHLSDSAKEHFETVQTYLDALGV 252

Query: 270 SLPENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKGADGK--DHYVQMGSYGIG 320
               N R+  RG++      F       G +  +     + G   +     V    +G+G
Sbjct: 253 PYVINPRM-VRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMRQLGGQDVSGIGFGLG 311

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R + A+             +     ++  + + A      +   K+ A+L   G  V 
Sbjct: 312 VDRTLLALQAEGVTI------EGAGGVEVFGVPLGA--AAKLELA-KLAAKLRAGGARVD 362

Query: 381 --WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             + D G + G+    AD  G    ++ G + +    V +K   TG + D+  + V+   
Sbjct: 363 LAYGDRGLK-GAM-KAADRSGAKYALVAGDRDIEAGTVGLKDLSTGDQIDVPADSVVAEV 420

Query: 439 SHRF 442
             R 
Sbjct: 421 LSRL 424


>gi|39938613|ref|NP_950379.1| histidyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
 gi|46396583|sp|P60918|SYH_ONYPE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|39721722|dbj|BAD04212.1| histidyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
          Length = 422

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/435 (12%), Positives = 111/435 (25%), Gaps = 31/435 (7%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSY 89
           M  +  KG Y  +         V   IR    +    E+  P ++   ++   +   +  
Sbjct: 1   MFSKI-KGTYDLMSDKMVCWQKVENHIRTLFAKYHLQEIRTPIIEYRGVFDRAAQHSEMV 59

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            KE    AD+ ++ +   P     +   +  +     +    F+     FR E   +   
Sbjct: 60  SKETYTFADKKERFITLRPEGTAGVIRSYVENKLDKTSQLHKFFYYGPCFRYERPQKG-- 117

Query: 150 MRSREFLMKDAYSFDL-TPEGSKHSYNKMFVSY--------------LRIFHRLGLKSIP 194
            R R+F            P          + +               L            
Sbjct: 118 -RYRQFHQVGVEILGQSNPFLDVEVIALAYETIKSLGICDITVKINSLGCKTTYNNYLQV 176

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
            +         L        +    +++  K+  + P   +     D +  ++ V     
Sbjct: 177 FKNYLQAHYQQLCPLCQERFEKNILRIWDCKNCNNEPFLKQAPRIFDHLVEDAKVRFLQV 236

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                    N +L   L               +F           A   G    D+ V +
Sbjct: 237 LEGLKQMNVNFELCHDLVRGLDY-----YTHSVFEIVYNNEQGHQAVLGGGGCYDNLVTL 291

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                      A  +E            +          I             +   L  
Sbjct: 292 FGGNPSPGIGFALGMERLMSILATHSFCNKNILPSLDAFILVSVPQFFYQGLALATTLRH 351

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFP-LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G     +            A L   P   +I+G K   ++++ IK+  T  +  +  ++
Sbjct: 352 QGFSADLNYQFLSFSKSLKQA-LKQQPLYLLILGPKEFDNNQITIKNTDTQQQTTILQKD 410

Query: 434 VINYASHRFSNNRPV 448
           V++Y      NN+ +
Sbjct: 411 VVSYFQ----NNKEL 421


>gi|331701367|ref|YP_004398326.1| histidyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
 gi|329128710|gb|AEB73263.1| Histidyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
          Length = 435

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/423 (14%), Positives = 113/423 (26%), Gaps = 18/423 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP   +  + V    R   +     E+  P  ++ D++  +     D   KEM  
Sbjct: 8   GTADILPGEAQKWNYVEETARMLFDDYRYQEIRTPMFENFDVFSRTSGDTSDVVTKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ M   P     +   F  +         P   + +   FR E        R R
Sbjct: 68  FNDKGDRHMSLRPEGTAGVVRAFVENKLYGPEHPRPVKVFYMGSMFRYERPQSG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           EF      +F             M +  L+ F   GL+                   I  
Sbjct: 125 EFHQIGVEAFGSNEPELDVEVIAMGMDLLKHFGLSGLRLEINSLGDKASRDAYRQALIDY 184

Query: 214 ADT------GETQVFCSKDFMDFPIPSENTDFDDIIS----LNSIVEQWTAPYAATSDVH 263
            D        +++V   K+ +      +  D + +      L+ + E     +     + 
Sbjct: 185 LDPHFDELSDDSKVRLHKNPLRVLDSKDKRDQEIVKGAPSILDYLNEDSQKHFDKVKHLL 244

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                  + +   V         IF       +L    T   A G+ + +     G    
Sbjct: 245 ESLNIPYVVDPDMVRGLDYYNHTIFEIMVDSKALGEGYTTICAGGRYNGLVEQLGGPEMP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            +   +                         +    +       +I   L   G     D
Sbjct: 305 GIGFGLGMERLMLLMEAQGVKFPVLDQLDAYVVGIGEQTSVLTLQIVQALRADGFAADRD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +  +  +QF  A+ L     + +G   +      +K   TG    + L E+        
Sbjct: 365 YLDRKPKAQFKTANKLNAQYTITIGESELEKKTANVKQMRTGTEVSVPLAEIFKDFDEII 424

Query: 443 SNN 445
           +  
Sbjct: 425 TKY 427


>gi|227542205|ref|ZP_03972254.1| histidyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182034|gb|EEI63006.1| histidyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 420

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/423 (14%), Positives = 116/423 (27%), Gaps = 31/423 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+  ++P   +    V      E  R G   + +P  +   L+        D   KEM  
Sbjct: 11  GVPDYVPPVSREFLAVRETFTHEAQRAGFEHIELPIFEDTHLFARGVGESTDVVTKEMYT 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  +++   P     +      H      LP         FR E RP+ G  R  + 
Sbjct: 71  FEDRGGRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLVYSGPFFRYE-RPQAGRYRQLQ- 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFIVL 213
            +         P             Y  +        +     AE  P   +    F+  
Sbjct: 129 QVGVEAIGVDDPALDAEIIALADRCYKSVGLTGYRLDLSSLGDAECRPAYREKLQAFLRK 188

Query: 214 ADTGE----TQVFCSKDFMDFPIPSENTDFDDIISLNSIV-----EQWTAPYAATSDV-H 263
               E             +D   P       D   L   +     E +        D   
Sbjct: 189 LPLDEETQRRAEINPLRVLDDKRPEVQEMLVDAPLLLDHLSNSSREHFEVVKGLLDDFGV 248

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK--DHYVQMGSYGIGA 321
           +  +   L        +          G +  +     + G   +     +    +G+G 
Sbjct: 249 SYTINPKLVRGLDYYTKTCFEFVHEGLGAQSGIGGGGRYDGLMAQLGGQELSGIGFGLGV 308

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF- 380
            R + A+          +   S     +  + + +  +        +   L   G     
Sbjct: 309 DRTLLAL------EAEGVSAGSPRRVDVYGVPLGSEAKRVLA---GVVNNLRAAGVSTDM 359

Query: 381 -WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            + D G + G+    A   G    +++G + ++D  V ++      +E +SL  V  +  
Sbjct: 360 SYGDRGLK-GAM-KGASRSGARYCLVLGEQELADGNVAVRDMNNHEQETVSLSAVQAFLE 417

Query: 440 HRF 442
            R 
Sbjct: 418 ERL 420


>gi|215431535|ref|ZP_03429454.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289754698|ref|ZP_06514076.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289695285|gb|EFD62714.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
          Length = 423

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/392 (15%), Positives = 112/392 (28%), Gaps = 15/392 (3%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            + G   + +P  +   L+        D   KEM   ADR D+++   P     +     
Sbjct: 36  RQAGYSHIELPIFEDTALFARGVGESTDVVSKEMYTFADRGDRSVTLRPEGTAGVVRAVI 95

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            H      LP         FR E RP+ G  R  +  +         P            
Sbjct: 96  EHGLDRGALPVKLCYAGPFFRYE-RPQAGRYRQLQ-QVGVEAIGVDDPALDAEVIAIADA 153

Query: 180 SYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQV----FCSKDFMDFPIP 233
            +  +        I    +    P   +L  EF+   D  E             +D   P
Sbjct: 154 GFRSLGLDGFRLEITSLGDESCRPQYRELLQEFLFGLDLDEDTRRRAGINPLRVLDDKRP 213

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                      L   +      +  T   H + L      N R+  RG++      F   
Sbjct: 214 ELRAMTASAPVLLDHLSDVAKQHFDTVLAHLDALGVPYVINPRM-VRGLDYYTKTAFEFV 272

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +    + +  G  G+   +     G     +   +              +        + 
Sbjct: 273 HDGLGAQSGIGGGGRYDGLMHQLGGQDLSGIGFGLGVDRTVLALRAEGKTAGDSARCDVF 332

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                +  +     +  RL   G  V   + D G + G+    A   G  + ++ G + +
Sbjct: 333 GVPLGEAAKLRLAVLAGRLRAAGVRVDLAYGDRGLK-GAM-RAAARSGARVALVAGDRDI 390

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               V +K   TG +  +S++ V+     R +
Sbjct: 391 EAGTVAVKDLTTGEQVSVSMDSVVAEVISRLA 422


>gi|326481313|gb|EGE05323.1| glycyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 654

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 93/290 (32%), Gaps = 35/290 (12%)

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +              ++         E +  AD     +   K     P+    T  + 
Sbjct: 351 RQHMQNEMAHYATDCWDAELFTSYGWIECVGCADRSAYDLSVHKKKTGAPLVVRQTRAEP 410

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
           +      V+     +       ++ + +++       A   ++   F    + +  +   
Sbjct: 411 LRIEEWQVDIDKKKFGPRFKKDSKTVENAI------EALTQDMREKFSLDLEKNGKIEIE 464

Query: 302 FKG---------------------ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII- 339
             G                      + +++   +     G  R++  ++E ++  +    
Sbjct: 465 VDGVGEGKVEIGKDLVQIEKRMRVENVREYTPNVIEPSFGIGRILYCLMEHAYWSRPDDE 524

Query: 340 ------WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                 +P +VAP K+ L+ +  H    +   +++  +L ++G     DD    IG +++
Sbjct: 525 ARGVLSFPPAVAPTKVLLVPLSTH-ASFQPLIQRLTLKLRRLGVSNRVDDSSASIGKRYS 583

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             D LG P  +    + V D+   ++ R T  +   S +E+ N       
Sbjct: 584 RNDELGTPFGITADFQSVKDNTFTLRDRDTTKQVRASEDEICNAVKSLVD 633



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     NV  + R+        +E+    L   ++   SG  D +   M +
Sbjct: 36 SGLYDYGPPGCALQANVVDLWRKHFVLEEDMLEVDTSMLTPHEVLKTSGHVDKFADWMCK 95


>gi|15609717|ref|NP_217096.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis H37Rv]
 gi|15842119|ref|NP_337156.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|31793764|ref|NP_856257.1| histidyl-tRNA synthetase [Mycobacterium bovis AF2122/97]
 gi|121638465|ref|YP_978689.1| histidyl-tRNA synthetase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662419|ref|YP_001283942.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148823775|ref|YP_001288529.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis F11]
 gi|167968808|ref|ZP_02551085.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|215404528|ref|ZP_03416709.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|215412352|ref|ZP_03421112.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|215427980|ref|ZP_03425899.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis T92]
 gi|215446829|ref|ZP_03433581.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis T85]
 gi|218754318|ref|ZP_03533114.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis GM 1503]
 gi|219558584|ref|ZP_03537660.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis T17]
 gi|224990959|ref|YP_002645646.1| histidyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798339|ref|YP_003031340.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis KZN 1435]
 gi|254232699|ref|ZP_04926026.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis C]
 gi|254366781|ref|ZP_04982824.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551631|ref|ZP_05142078.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260187593|ref|ZP_05765067.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A]
 gi|260201709|ref|ZP_05769200.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289444118|ref|ZP_06433862.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289448229|ref|ZP_06437973.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis CPHL_A]
 gi|289553630|ref|ZP_06442840.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis KZN 605]
 gi|289570751|ref|ZP_06450978.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis T17]
 gi|289746372|ref|ZP_06505750.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289751203|ref|ZP_06510581.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis T92]
 gi|289758710|ref|ZP_06518088.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis T85]
 gi|289762751|ref|ZP_06522129.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis GM 1503]
 gi|294994310|ref|ZP_06800001.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis 210]
 gi|297635190|ref|ZP_06952970.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis KZN 4207]
 gi|297732182|ref|ZP_06961300.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis KZN R506]
 gi|298526053|ref|ZP_07013462.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|306776854|ref|ZP_07415191.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu001]
 gi|306780618|ref|ZP_07418955.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu002]
 gi|306785381|ref|ZP_07423703.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu003]
 gi|306789981|ref|ZP_07428303.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu004]
 gi|306794062|ref|ZP_07432364.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu005]
 gi|306798460|ref|ZP_07436762.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu006]
 gi|306804339|ref|ZP_07441007.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu008]
 gi|306807622|ref|ZP_07444290.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu007]
 gi|306969823|ref|ZP_07482484.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu009]
 gi|306972968|ref|ZP_07485629.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu010]
 gi|307080679|ref|ZP_07489849.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu011]
 gi|307085266|ref|ZP_07494379.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu012]
 gi|313659516|ref|ZP_07816396.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis KZN V2475]
 gi|54039671|sp|P67484|SYH_MYCBO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|54042034|sp|P67483|SYH_MYCTU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166228585|sp|A1KLS8|SYH_MYCBP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166228586|sp|A5U5T0|SYH_MYCTA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|254782338|sp|C1AF49|SYH_MYCBT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|1478232|emb|CAB01263.1| PROBABLE HISTIDYL-TRNA SYNTHETASE HISS (HISTIDINE--TRNA LIGASE)
           (HISRS) (HISTIDINE--TRANSLASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|13882402|gb|AAK46970.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|31619358|emb|CAD94796.1| PUTATIVE HISTIDYL-TRNA SYNTHETASE HISS (HISTIDINE--TRNA LIGASE)
           (HISRS) (HISTIDINE--TRANSLASE) [Mycobacterium bovis
           AF2122/97]
 gi|121494113|emb|CAL72591.1| Putative histidyl-tRNA synthetase hisS [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124601758|gb|EAY60768.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis C]
 gi|134152292|gb|EBA44337.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506571|gb|ABQ74380.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148722302|gb|ABR06927.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis F11]
 gi|224774072|dbj|BAH26878.1| histidyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319842|gb|ACT24445.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis KZN 1435]
 gi|289417037|gb|EFD14277.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289421187|gb|EFD18388.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis CPHL_A]
 gi|289438262|gb|EFD20755.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis KZN 605]
 gi|289544505|gb|EFD48153.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis T17]
 gi|289686900|gb|EFD54388.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289691790|gb|EFD59219.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis T92]
 gi|289710257|gb|EFD74273.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis GM 1503]
 gi|289714274|gb|EFD78286.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis T85]
 gi|298495847|gb|EFI31141.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|308214780|gb|EFO74179.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu001]
 gi|308326552|gb|EFP15403.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu002]
 gi|308329974|gb|EFP18825.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu003]
 gi|308333591|gb|EFP22442.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu004]
 gi|308337618|gb|EFP26469.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu005]
 gi|308341283|gb|EFP30134.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu006]
 gi|308345943|gb|EFP34794.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu007]
 gi|308349091|gb|EFP37942.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu008]
 gi|308352632|gb|EFP41483.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu009]
 gi|308357659|gb|EFP46510.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu010]
 gi|308361600|gb|EFP50451.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu011]
 gi|308365219|gb|EFP54070.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis SUMu012]
 gi|323718853|gb|EGB28009.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis CDC1551A]
 gi|326904194|gb|EGE51127.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis W-148]
 gi|328458109|gb|AEB03532.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis KZN 4207]
          Length = 423

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/392 (15%), Positives = 112/392 (28%), Gaps = 15/392 (3%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            + G   + +P  +   L+        D   KEM   ADR D+++   P     +     
Sbjct: 36  RQAGYSHIELPIFEDTALFARGVGESTDVVSKEMYTFADRGDRSVTLRPEGTAGVVRAVI 95

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            H      LP         FR E RP+ G  R  +  +         P            
Sbjct: 96  EHGLDRGALPVKLCYAGPFFRYE-RPQAGRYRQLQ-QVGVEAIGVDDPALDAEVIAIADA 153

Query: 180 SYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQV----FCSKDFMDFPIP 233
            +  +        I    +    P   +L  EF+   D  E             +D   P
Sbjct: 154 GFRSLGLDGFRLEITSLGDESCRPQYRELLQEFLFGLDLDEDTRRRAGINPLRVLDDKRP 213

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                      L   +      +  T   H + L      N R+  RG++      F   
Sbjct: 214 ELRAMTASAPVLLDHLSDVAKQHFDTVLAHLDALGVPYVINPRM-VRGLDYYTKTAFEFV 272

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +    + +  G  G+   +     G     +   +              +        + 
Sbjct: 273 HDGLGAQSGIGGGGRYDGLMHQLGGQDLSGIGFGLGVDRTVLALRAEGKTAGDSARCDVF 332

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                +  +     +  RL   G  V   + D G + G+    A   G  + ++ G + +
Sbjct: 333 GVPLGEAAKLRLAVLAGRLRAAGVRVDLAYGDRGLK-GAM-RAAARSGARVALVAGDRDI 390

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               V +K   TG +  +S++ V+     R +
Sbjct: 391 EAGTVAVKDLTTGEQVSVSMDSVVAEVISRLA 422


>gi|319947810|ref|ZP_08022004.1| histidyl-tRNA synthetase [Dietzia cinnamea P4]
 gi|319438534|gb|EFV93460.1| histidyl-tRNA synthetase [Dietzia cinnamea P4]
          Length = 426

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 125/421 (29%), Gaps = 33/421 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+  ++P        V   I     R G   + +P  +   L+        D   KEM  
Sbjct: 15  GVPDYVPPASAGFVAVRDAITTAARRAGYGHIELPIFEDTALFARGVGESTDVVSKEMYS 74

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  +++   P     +      H      LP         FR E RP+ G  R  + 
Sbjct: 75  FEDRGGRSVTLRPEGTAGVMRAVIEHGLDRGQLPVKLCYAGPFFRYE-RPQAGRYRQLQ- 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
            +         P            ++  +        +    +    P   +    F+  
Sbjct: 133 QVGIEAIGVDDPALDAEVIAVADEAFRSLGLTGFRLELTSLGDETCRPQYRERLQSFLAG 192

Query: 214 AD----TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            D    T E         +D   P      +D   +   +   +A + AT   H + L  
Sbjct: 193 LDLDEATRERARINPLRVLDDKRPEVRAQLEDAPLMIDHLSDASAEHFATVRAHLDALGV 252

Query: 270 SLPENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIG 320
               N R+  RG++      F       G +  +     + G         +    +GIG
Sbjct: 253 PYTVNPRM-VRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMEQLGGQALSGIGFGIG 311

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R V A+     D       D       +                 + A   + G    
Sbjct: 312 VDRTVLALQAEGLDPAAQGRVDVYGVALGAAAKAAMVP---------VLAEFRRNGLRAD 362

Query: 381 --WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             + D G + G+ F  AD  G  + V++G   +      +K   TG +E + LE ++ + 
Sbjct: 363 MAYGDRGMK-GA-FKAADRSGAAVTVVIGENELETGTAVVKTMSTGEQEPVPLEAILGHV 420

Query: 439 S 439
           +
Sbjct: 421 T 421


>gi|313672835|ref|YP_004050946.1| histidyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939591|gb|ADR18783.1| histidyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 414

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/404 (15%), Positives = 109/404 (26%), Gaps = 21/404 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V     +   R    E  +P L+  +++        D   KEM    D+    +   
Sbjct: 19  WQKVEMSFHKVFKRYDYAEFKLPVLEKVEVFQRGIGDTTDIVEKEMFVFDDKGGDRLALR 78

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  +     N    +Y     FR E   +    R R+F      +F  + 
Sbjct: 79  PEGTASIVRGYIENKLYTGNTISKYYYYGPMFRRERPQKG---RFRQFYQVGIEAFGSSA 135

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                   K           L + S+ + +   P    L  E ++   T +    C+   
Sbjct: 136 PSLDAEVIKTMQDIFDECGILDIVSLNINSIGCPKCRPLYKEKLISYLTDKKDQLCNDCL 195

Query: 228 MDF---PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL--------PENKR 276
                 P+   +   D   S      +           H EK    L         +   
Sbjct: 196 NRLNRNPLRVLDCKIDTCKSATRNAPKMVDHLCDECSTHFEKTKQFLTFFNIKFNIDPFM 255

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V      V   F F T            A G           +G   +         D  
Sbjct: 256 VRGLDYYVKTAFEFVTD-----RLGASSAVGGGGRYDGLIKTLGGPDIPGIGYAIGVDRL 310

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
             +  +   P +          +       +I   L K      +D       +QF  AD
Sbjct: 311 VTLMMEKGTPLERPKKVFVVFFEETLKEGFEIIELLRKNDIPTSFDYEFGNFKNQFKKAD 370

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                  +I+G+       V++K   TG + ++  EE+I   + 
Sbjct: 371 RSSADWVIIIGTTEKEQGIVQLKDMKTGDQFEVKKEEIIKKLTS 414


>gi|317051009|ref|YP_004112125.1| histidyl-tRNA synthetase [Desulfurispirillum indicum S5]
 gi|316946093|gb|ADU65569.1| histidyl-tRNA synthetase [Desulfurispirillum indicum S5]
          Length = 418

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 58/417 (13%), Positives = 105/417 (25%), Gaps = 29/417 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    L    +       I++E        E+ +P ++  +L+        D  GKEM  
Sbjct: 11  GFNDLLSPMARRWSQAEQILQEILENWRYQEIRLPIMEKTELFCRGIGENTDIVGKEMYT 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            AD++D+++   P     +   +  +       P   +     FR E   +    R R+F
Sbjct: 71  FADKSDESVTLRPEGTAGVVRAYVENKLYNELAPQRVWYRGPMFRYERPQKG---RYRQF 127

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                  F  T          +  + L         +I +     P       + +V   
Sbjct: 128 HQLGVEVFGETEATIDAETIALGYTMLVELGIAAGVTIEINNIGCPQCRPGYRQALVAFL 187

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISL-----------NSIVEQWTAPYAATSDVHN 264
               +  C                                     E   A Y A     +
Sbjct: 188 NARREHLCENCVERIEKNPLRVLDCKNPECQAQVASAPTIDEHRCESCAAHYGALQIYLD 247

Query: 265 EKLFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                       V      VG  F       G++ ++     + G           + G 
Sbjct: 248 AYGVPYQRNPFMVRGLDYYVGTAFEFTTSLLGSQNAIGGGGRYDGLVEDLGGPATAAVGF 307

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                   ++    D                        Q  R         L  +G   
Sbjct: 308 AFGMERVMLLVEHFDSLQADLSLDFYIGYTENTFTLQGLQALRA--------LRSLGKTS 359

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             D     + + F   D LG    V++G    + +   +K   TG +  + L E+  
Sbjct: 360 ELDTRQRSVKNIFKRGDRLGARHVVLIGGDEAAGNFFTVKELATGEQRQVPLAELAK 416


>gi|120554056|ref|YP_958407.1| histidyl-tRNA synthetase [Marinobacter aquaeolei VT8]
 gi|120323905|gb|ABM18220.1| histidyl-tRNA synthetase [Marinobacter aquaeolei VT8]
          Length = 424

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/427 (13%), Positives = 117/427 (27%), Gaps = 33/427 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        V + +R    + G  E+ +P ++  +L+  S G   D   KEM  
Sbjct: 9   GMNDILPDQTPVWQYVESTVRRVLGQYGYQEIRMPVVEHTELFKRSIGEVTDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   +       +     FR E   +    R R+F
Sbjct: 69  FEDRNGDSLTLRPEGTAGCVRAAEEHGLLFNQ-TRRLWYTGPMFRHERPQKG---RYRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF----------VSYLRIFHRLGLKSIPMRAESGPIGGD 205
                  F +           +                  + +G            +   
Sbjct: 125 HQIGVECFGMAGPDIDAELLILTARLWSALGLSDHARLEINSIGTSDSRKVYRQALVAYL 184

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW--TAPYAATSDVH 263
             ++  +  D+           +D   P+         SL+  ++           + + 
Sbjct: 185 EQYQDKLDDDSKRRLTTNPLRILDSKDPATREILQGAPSLDDYLDDESRQHFEQLKAMLD 244

Query: 264 NE----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  +  +L        + +        G + ++     + G        Q+G    
Sbjct: 245 AAGVAYTVNPALVRGLDYYGKTVFEWITDSLGAQGTICAGGRYDG-----LVEQLGGKPT 299

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC---RDACEKIYARLSKVG 376
            A+     +       + +         +  +      DQ         E +   L   G
Sbjct: 300 VAVGFAMGLERLILLLETLELVPEHVNNQADVYVTAMGDQAVAPAMALAETLRNELP--G 357

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVI 435
             V     G    SQ   AD  G    VI+G   V+ +   +K  R    +++++  ++ 
Sbjct: 358 RIVVSHCGGGSFKSQMKKADRSGARFAVILGENEVAQATAGLKPLRDDQPQQEIAQADLA 417

Query: 436 NYASHRF 442
              +   
Sbjct: 418 AVLAGLL 424


>gi|20088996|ref|NP_615071.1| glycyl-tRNA synthetase [Methanosarcina acetivorans C2A]
 gi|19913849|gb|AAM03551.1| glycyl-tRNA synthetase [Methanosarcina acetivorans C2A]
          Length = 612

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D  ++I A+L +    V +DD G  IG ++   D +G P  V V    + D  V I
Sbjct: 515 KELADPAKEIIAKLREKTLLVNYDDSG-TIGRRYRRNDEIGTPYSVTVDYDTLQDGTVTI 573

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R +  +    +  + N      
Sbjct: 574 RDRDSMRQVRAPINGIENVLYELI 597



 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           G Y + PLG      +  + RE    + G +E+  PT+   ++++ SG    +   +   
Sbjct: 29  GFYDYGPLGSTLKRRIEQVWREFYVIQEGHMEIECPTIGIEEVFIASGHVGGFSDPLCEC 88

Query: 97  ADRND 101
            +  +
Sbjct: 89  MNCKE 93


>gi|256959284|ref|ZP_05563455.1| histidyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|300861096|ref|ZP_07107183.1| histidine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|256949780|gb|EEU66412.1| histidyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|300850135|gb|EFK77885.1| histidine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|315034526|gb|EFT46458.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0027]
          Length = 433

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 107/396 (27%), Gaps = 11/396 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDIVSKEMYDFYDKGDRHVTLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  +         P+  Y +   FR E      + +  +  ++   S + 
Sbjct: 80  PEGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYERPQAGRLRQFHQIGVEAFGSENP 139

Query: 166 ------TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                                   + + LG K          I     H   +  D+   
Sbjct: 140 ALDVEIMAMALDFFKQLGIQQIKLVINSLGDKETRATYRQALIDYLEPHMAELSEDSQRR 199

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                   +D     +     +  S+   + E   A + A +D+ +        ++  V 
Sbjct: 200 LHENPLRVLDSKDKKDKVIVAEAPSILEYLNEPSKAHFEAVTDMLDLLEIPYEIDSNMVR 259

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                   IF   ++     + +   A G+ + +     G         +          
Sbjct: 260 GLDYYTHTIFEIMSEAPKMGAQSTICAGGRYNGLVEELGGPDTPGFGFGMGIERVLLTME 319

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +         +         A  ++   +   G     D M  +  +QF  AD L
Sbjct: 320 AEEVVIPALSELDAYVVGIGSETNVAALQLVQSIRNFGFSADRDYMNRKPKAQFKTADKL 379

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              L + +G   +++  V +K   T   +   L  +
Sbjct: 380 QAKLVLTIGENELNEGIVNVKSMATREEKAFPLSAI 415


>gi|54297456|ref|YP_123825.1| histidyl-tRNA synthetase [Legionella pneumophila str. Paris]
 gi|81679478|sp|Q5X519|SYH_LEGPA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|53751241|emb|CAH12652.1| histidyl-tRNA synthetase [Legionella pneumophila str. Paris]
          Length = 426

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/419 (13%), Positives = 119/419 (28%), Gaps = 16/419 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        +         R G  E+  P +++  L+  + G   D   KEM  
Sbjct: 11  GMNDVLPDSTSVWRFIEQTFINCLVRYGYKEIRFPIVENTQLFKRTIGEITDIVEKEMYT 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D N  ++   P            H   +      +Y     FR E   +    +  +F
Sbjct: 71  FNDLNGDSITLRPEGTAGCVRACIEHGLLHNQQQKLWYL-GPMFRHERPQKGRYRQFNQF 129

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
            ++                  +++             +             +  E++   
Sbjct: 130 GVEALGITGTAIELELISICRRLWTDLGFSQSVQLQVNSLGEINERQKYRSILVEYLHDH 189

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP-- 272
                +    +     P+   ++   D+  L     +        S  H +   + L   
Sbjct: 190 FHILDED-SKRRLDKNPLRVLDSKNPDLQHLIQNAPKLIDVLGDDSREHFQSFCNGLETL 248

Query: 273 ----ENKRVSARGIE-VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                   V  RG++  G   +      L   AT       D  V+            A 
Sbjct: 249 GIPYSINPVLVRGLDYYGQTVFEWVTDQLGSQATICAGGRYDMLVEFLGGAPTPAVGFAL 308

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDDMG 385
            +E        +   + +  K S+  I  +++        +   +       DV  +  G
Sbjct: 309 GLERIFLLMETLNLLNESNNKQSIFIIATNEEAIL-KALVMAESIRNAHPSLDVITNTAG 367

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVINYASHRFS 443
               SQF  AD  G  + +I+G   ++   V IK   T   +  + + ++  +  +  +
Sbjct: 368 GGFKSQFKKADKSGARMALILGEDEIAREYVSIKDLRTEIEQISIPMTKINEFLQNYLA 426


>gi|145506787|ref|XP_001439354.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406538|emb|CAK71957.1| unnamed protein product [Paramecium tetraurelia]
          Length = 640

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/365 (10%), Positives = 94/365 (25%), Gaps = 17/365 (4%)

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
            R     +      PT +       +        L         + +             
Sbjct: 252 CREFQMAEIEYFVDPTEKSTFKKFNKYINLEIPLLSRQLQAEAKQHQPFKMGDAVKEGII 311

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
                  +         +   N + + + +              ++         E + L
Sbjct: 312 NNETLAYFICRTYLYLVEIGINPVNIRFRQHQADEMAHYSSDCWDAEIEMSSGWVECVGL 371

Query: 214 ADTGETQVFCSKDFMDFPIPSE---NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           AD     +          + +           +    + +Q          +   K  ++
Sbjct: 372 ADRSAYDLNAHSAATGQKLQAARKFKVPQPRQVLQVILDKQKIGKELKKDGMALIKYVEA 431

Query: 271 LPENKRVSARGIEVGH---IFYFGTKYSLPMSATFKGADGKDHYV------QMGSYGIGA 321
           LP++++         H   +F    K         K      + +       +     G 
Sbjct: 432 LPDDEKQELSDYFQNHEDKVFNIDGKDLTLNRQLVKFEQKTMNVMEEKFIPHVIEPAFGI 491

Query: 322 MRVVAAVIES---SHDGKGIIWPDSVAPFKISLINI--KAHDQVCRDACEKIYARLSKVG 376
            R++ A+IE      D     +            +I      +      +++ + L K+G
Sbjct: 492 GRILQAIIEHSFNQRDDPQKTFFKFSPRVAPVKCSILSVVQSEEFDVVIQELTSSLKKLG 551

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                D+ G  +G ++A  D +G P  + V  + ++   V ++   T  +  +   EV  
Sbjct: 552 ISCKTDNAGVALGKKYARTDEIGIPFAITVDKETLAAQSVTLREIETTKQVRVPSVEVPR 611

Query: 437 YASHR 441
                
Sbjct: 612 LILEL 616



 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
            G+Y + P+G     N+    RE         E++   L    +   SG  D +   +
Sbjct: 52  AGLYDYGPVGCAIKTNIEQYWREHFIIEEDLFEIAATILTPEPVLKASGHVDRFTDLL 109


>gi|257084827|ref|ZP_05579188.1| histidyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|256992857|gb|EEU80159.1| histidyl-tRNA synthetase [Enterococcus faecalis Fly1]
          Length = 433

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 108/396 (27%), Gaps = 11/396 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDIVSKEMYDFYDKGDRHVTLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  +         P+  Y +   FR E      + +  +  ++   S + 
Sbjct: 80  PEGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYERPQAGRLRQFHQIGVEAFGSENP 139

Query: 166 ------TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                                   + + LG K          I     H   +  D+   
Sbjct: 140 ALDVEIMAMALDFFKQLGIQQIKLVINSLGDKETRATYRQALIDYLEPHMAELSEDSQRR 199

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                   +D     +     +  S+ + + E   A + A +D+ +        ++  V 
Sbjct: 200 LHENPLRVLDSKDKKDKVIVAEAPSILDYLNEPSKAHFEAVTDMLDLLEIPYEIDSNMVR 259

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                   IF   ++     + +   A G+ + +     G         +          
Sbjct: 260 GLDYYTHTIFEIMSEAPKMGAQSTICAGGRYNGLVEELGGPDTPGFGFGMGIERVLLTME 319

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +         +         A  ++   +   G     D M  +  +QF  AD L
Sbjct: 320 AEEVVIPALSELDAYVVGIGSETNVAALQLVQSIRNFGFSADRDYMNRKPKAQFKTADKL 379

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              L + +G   +++  V +K   T   +   L  +
Sbjct: 380 QAKLVLTIGENELNEGIVNVKSMATREEKAFPLSAI 415


>gi|257422240|ref|ZP_05599230.1| histidyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|257164064|gb|EEU94024.1| histidyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|315157280|gb|EFU01297.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0043]
          Length = 433

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 109/396 (27%), Gaps = 11/396 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDIVSKEMYDFYDKGDRHVTLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  +         P+  Y +   FR E      + +  +  ++   S + 
Sbjct: 80  PEGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYERPQAGRLRQFHQIGVEAFGSENP 139

Query: 166 ------TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                                   + + LG K          I     H   +  D+   
Sbjct: 140 ALDVEIMAMALDFFKQLGIQQIKLVINSLGDKETRATYRQALIDYLEPHMAELSEDSQRR 199

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                   +D     +     +  S+ + + E   A + A +D+ +        ++  V 
Sbjct: 200 LHENPLRVLDSKDKKDKVIVAEAPSILDYLNEPSKAHFEAVTDMLDLLEIPYEIDSNMVR 259

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                   IF   ++     + +   A G+ + +     G         +          
Sbjct: 260 GLDYYTHTIFEIMSEAPKMGAQSTICAGGRYNGLVEELGGPDTPGFGFGMGIERVLLTME 319

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                ++        +         A  ++   +   G     D M  +  +QF  AD L
Sbjct: 320 AEEVVISALSELDAYVVGIGSETNIAALQLVQSIRNFGFSADRDYMNRKPKAQFKTADKL 379

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              L + +G   +++  V +K   T   +   L  +
Sbjct: 380 QAKLVLTIGENELNEGIVNVKSMATREEKAFPLSAI 415


>gi|256762900|ref|ZP_05503480.1| histidyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256964756|ref|ZP_05568927.1| histidyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|257082209|ref|ZP_05576570.1| histidyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257087176|ref|ZP_05581537.1| histidyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|307272837|ref|ZP_07554084.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|307287884|ref|ZP_07567917.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|312900882|ref|ZP_07760176.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|256684151|gb|EEU23846.1| histidyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256955252|gb|EEU71884.1| histidyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|256990239|gb|EEU77541.1| histidyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|256995206|gb|EEU82508.1| histidyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|306501029|gb|EFM70336.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|306510451|gb|EFM79474.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|311291981|gb|EFQ70537.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|315025976|gb|EFT37908.1| histidyl-tRNA synthetase [Enterococcus faecalis TX2137]
 gi|315033288|gb|EFT45220.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0017]
 gi|315143401|gb|EFT87417.1| histidyl-tRNA synthetase [Enterococcus faecalis TX2141]
 gi|315163664|gb|EFU07681.1| histidyl-tRNA synthetase [Enterococcus faecalis TX1302]
 gi|315167504|gb|EFU11521.1| histidyl-tRNA synthetase [Enterococcus faecalis TX1341]
 gi|315169380|gb|EFU13397.1| histidyl-tRNA synthetase [Enterococcus faecalis TX1342]
 gi|315174312|gb|EFU18329.1| histidyl-tRNA synthetase [Enterococcus faecalis TX1346]
 gi|327535486|gb|AEA94320.1| histidine--tRNA ligase [Enterococcus faecalis OG1RF]
          Length = 433

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 108/396 (27%), Gaps = 11/396 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDIVSKEMYDFYDKGDRHVTLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  +         P+  Y +   FR E      + +  +  ++   S + 
Sbjct: 80  PEGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYERPQAGRLRQFHQIGVEAFGSENP 139

Query: 166 ------TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                                   + + LG K          I     H   +  D+   
Sbjct: 140 ALDVEIMAMALDFFKQLGIQQIKLVINSLGDKETRATYRQALIDYLEPHMAELSEDSQRR 199

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                   +D     +     +  S+ + + E   A + A +D+ +        ++  V 
Sbjct: 200 LHENPLRVLDSKDKKDKVIVAEAPSILDYLNEPSKAHFEAVTDMLDLLEIPYEIDSNMVR 259

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                   IF   ++     + +   A G+ + +     G         +          
Sbjct: 260 GLDYYTHTIFEIMSEAPKMGAQSTICAGGRYNGLVEELGGPDTPGFGFGMGIERVLLTME 319

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +         +         A  ++   +   G     D M  +  +QF  AD L
Sbjct: 320 AEEVVIPALSELDAYVVGIGSETNVAALQLVQSIRNFGFSADRDYMNRKPKAQFKTADKL 379

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              L + +G   +++  V +K   T   +   L  +
Sbjct: 380 QAKLVLTIGENELNEGIVNVKSMATREEKAFPLSAI 415


>gi|90075272|dbj|BAE87316.1| unnamed protein product [Macaca fascicularis]
          Length = 392

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 82/308 (26%), Gaps = 24/308 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 57  TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 116

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 117 RSCYDLSCHARATKVPLVAEKPLKEPKTVSVVQFEPNKGAIGKAYKKDAKLVMEYLAICD 176

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 177 ECYITEMEMLLNEKGEFTIETE-GKTFQLTKDMVNVKRFQ-KTLYVEEVVPNVIEPSFGL 234

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 235 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRH 294

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 295 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEVSE 354

Query: 434 VINYASHR 441
           + +     
Sbjct: 355 LPSIVRDL 362


>gi|302410789|ref|XP_003003228.1| glycyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
 gi|261358252|gb|EEY20680.1| glycyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
          Length = 663

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 100/319 (31%), Gaps = 34/319 (10%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
              +   +     K   +   V + +              ++  +      E +  AD  
Sbjct: 329 LGYFIARIALFLKKIGVDMSKVRFRQHMQNEMAHYATDCWDAELLTSSGWIECVGCADRS 388

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
              +         P+   +   + I+     VE     +        + +  +L    + 
Sbjct: 389 AYDLTVHAKKTGAPLIVRDRLDEPIVRELWEVEVDKKKFGPKFKKDGKTVEAALEATSQE 448

Query: 278 SARGIEVGHIFYFGTKYS-LPMSATFKG------------------ADGKDHYVQMGSYG 318
               +          K S     A                       + +++   +    
Sbjct: 449 QREALAK----QLSEKGSLELEVAGVADGKVEISKDLVTIEFRKKVENTREYTPNVIEPS 504

Query: 319 IGAMRVVAAVIESSHDGKGII----------WPDSVAPFKISLINIKAHDQVCRDACEKI 368
            G  R++ ++IE S+  +G            +P +VAP K+ ++ + A+    +   +KI
Sbjct: 505 FGIGRILYSLIEHSYWTRGSDGGDEARSVLSFPPTVAPTKVLIVPLSANK-AFKPFIQKI 563

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +L KVG     DD    IG +++  D LG PL + +  + V DS   ++ R +  +  
Sbjct: 564 SQKLRKVGVSSRIDDSSATIGKRYSRNDELGTPLGITIDFQSVQDSTYTLRDRDSTKQVR 623

Query: 429 MSLEEVINYASHRFSNNRP 447
              + ++         ++ 
Sbjct: 624 ADEDAIVAAVLSIVEGSKE 642



 Score = 47.4 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 10/100 (10%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHS-------KGIYSWLPLGQKALDNVNAIIREEQN 62
            L+  P D  +     +LR  M    S        G++ + P G     N+    R+   
Sbjct: 7   TLKGQPLDRPVLDA--LLRRRMFFTPSFEIYGGVGGLFDYGPPGCALQANIIDAWRKHFI 64

Query: 63  -RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
                +E+    L   D+   SG  D +   M +     D
Sbjct: 65  LEEDMLEVDCTVLTPHDVLKTSGHVDKFADWMCKDPKNGD 104


>gi|222153889|ref|YP_002563066.1| histidyl-tRNA synthetase [Streptococcus uberis 0140J]
 gi|254782349|sp|B9DW81|SYH_STRU0 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|222114702|emb|CAR43804.1| histidyl-tRNA synthetase [Streptococcus uberis 0140J]
          Length = 425

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 119/414 (28%), Gaps = 29/414 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  + RE   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYLENVARETFKKYHYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  +         P   Y I   FR E        R REF       F  
Sbjct: 80  PEGTAPVVRSFVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQIGVECFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT-----GETQ 220
               S     +       +F  LG+K + +   S       +     L D       +  
Sbjct: 137 ANPASD---VETIAMASHLFETLGIKDMTLHLNSLGNPSSRAAYRQALIDYLTPMREQLS 193

Query: 221 VFCSKDFMDFPIPSENTDFDDII--------SLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
               +   + P+   ++   +           L+ + E+  A + A  ++        + 
Sbjct: 194 KDSQRRLDENPLRVLDSKEVEDKVAVENAPSILDYLDEESKAHFEAVQEMLTTLNIPFVI 253

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFK--GADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +   V         IF F          T    G          G    G    +     
Sbjct: 254 DTNMVRGLDYYNHTIFEF-MAKVEGSDLTICAGGRYDGLVSYFDGPETPGFGFGLGLERL 312

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                K  I      P  + L  +    +        +   + K G     D +G +I +
Sbjct: 313 LLILEKQGITLPIEEPMDVYLAVLG---EAANSKALALVQAIRKQGFTAERDYLGRKIKA 369

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           QF  AD       + +G   V   KV IK+  T    ++SLEE+ +  +     
Sbjct: 370 QFKSADSFNAKTIITLGESEVETGKVIIKNNQTREEMEVSLEEITSNFATIMEK 423


>gi|302664275|ref|XP_003023770.1| hypothetical protein TRV_02082 [Trichophyton verrucosum HKI 0517]
 gi|291187783|gb|EFE43152.1| hypothetical protein TRV_02082 [Trichophyton verrucosum HKI 0517]
          Length = 1327

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 71/203 (34%), Gaps = 1/203 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  ++ + +E  T        +  EK      E   V    +E+G       K     + 
Sbjct: 432 DSKTVENAIEALTQDVREKLSLDLEKNGKIEIEVDGVGEGKVEIGKDLVQIEKRMRVENV 491

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                +  +    +G      M               + +P +VAP K+ L+ +  H   
Sbjct: 492 REYTPNVIEPSFGIGRILYCLMEHAYWSRPDDEARGVLSFPPAVAPTKVLLVPLSTH-AS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +   +++  +L ++G     DD    IG +++  D LG P  +    + V D+   ++ 
Sbjct: 551 FQPLIQRLTLKLRRLGVSNRVDDSSASIGKRYSRNDELGTPFGITADFQSVKDNTFTLRD 610

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +   S +E+ N       
Sbjct: 611 RDTTKQVRASEDEICNAVKSLVD 633



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     NV  + R+        +E+    L   ++   SG  D +   M +
Sbjct: 36 SGLYDYGPPGCALQANVVDLWRKHFVLEEDMLEVDTSMLTPHEVLKTSGHVDKFADWMCK 95


>gi|255543218|ref|XP_002512672.1| glycyl-tRNA synthetase, putative [Ricinus communis]
 gi|223548633|gb|EEF50124.1| glycyl-tRNA synthetase, putative [Ricinus communis]
          Length = 686

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 73/283 (25%), Gaps = 14/283 (4%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                     +         +     +       +  +RA S         +   +    
Sbjct: 393 LANEMAHYAADCWDAEIECSYGWIECVGIAD-RSAYDLRAHSVSTFFFKQLKDRSILFRW 451

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           E+ +       +       T    +    ++ E+      A+ +   E  F         
Sbjct: 452 ESNIMNCWLLKNL------TRMLILHCKFAMNEKEAMEMKASLETKGEVEFYVC---TLE 502

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
               I+   +     K                  +    Y +          ++  +   
Sbjct: 503 KNVTIKKNMVTISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLFEHSFYMRPSKAGDEQLN 562

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +     V       +     +Q   +  + I   L+  G     D  G  IG ++A  D 
Sbjct: 563 VFRFPPVVAPIKCTVFPLVQNQQYEEVAKVISRSLTAAGISHKIDITGTSIGKRYARTDE 622

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           LG P  + V     S S V I+ R +  +  +++EE  +    
Sbjct: 623 LGVPFAITVD----STSSVTIRERDSKDQIRVNIEEAASVVKS 661



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 12  QENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAI 67
           +E  R A + + +  L    +  I++   G+Y + P G     NV A  R+        +
Sbjct: 76  REAFRQAVVNTLERRLFYIPSFKIYRGVAGLYDYGPPGCSVKSNVLAFWRQHFVLEENML 135

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
           E+  P +    +   SG  D +   M++  ++           ++  T
Sbjct: 136 EVDCPCVTPEIVLKASGHVDKFTDLMVKD-EKTGTCYRADHLLKDFCT 182


>gi|146298558|ref|YP_001193149.1| glycyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
 gi|146152976|gb|ABQ03830.1| glycyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
          Length = 513

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 81/253 (32%), Gaps = 16/253 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       GE   +             +             E+  A YA  
Sbjct: 260 FRMREFEQMEMQFFVRPGEEMQWYEHWKQTRLNWHLSLGLGKENYRFHDHEKL-AHYANA 318

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +            E + + +R            +YS      F     +++   +    +
Sbjct: 319 AADIEFNFPFGFKELEGIHSRTDFDLKAHE---QYSGRKLQYFDPELNENYVPYVVETSV 375

Query: 320 GAMRVVAA---------VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R+  A          +E   +   +  P  +AP K +++ +   D    +  +KI  
Sbjct: 376 GLDRMFLAVFATSLQEETLEDGSERTVLKLPAVLAPTKAAVLPLVKKD-GLPEISKKIIE 434

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L     +V +D+    +G ++   D LG P  + V  + + D  V I+HR T  ++ + 
Sbjct: 435 DLK-WDFNVSYDEKDA-VGRRYRRQDALGTPFCITVDHQTLEDETVTIRHRDTMKQDRVK 492

Query: 431 LEEVINYASHRFS 443
           + E+     +  S
Sbjct: 493 ISELRGIIENEVS 505


>gi|171912994|ref|ZP_02928464.1| histidyl-tRNA synthetase [Verrucomicrobium spinosum DSM 4136]
          Length = 429

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 140/429 (32%), Gaps = 38/429 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE-SGRYDSYGKEMLRL 96
           G   + P      +++    R   +R G +E   PTL+S DL  + SG  D   +++   
Sbjct: 9   GFRDFFPEDCALRNSIFKRWRSVASRHGFVEYEGPTLESTDLLKKKSG--DEITQQLFCF 66

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
             + ++ +   P     +  +  +  + +   P  ++QI   +R E + R    R REF 
Sbjct: 67  TTKGEEEVSMRPEVTPTLARMAAARQRDFPK-PLKWFQIGPCYRYERQQRG---RLREFY 122

Query: 157 MKDAYSF-DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
             +     + +P            S        G     +R         L  EF    +
Sbjct: 123 QFNVDILGEASPAADAELVALAIESLRSFALEPG--DFIIRLSD----RRLWTEFQSTYE 176

Query: 216 TGETQVFCSKDFMD--FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH--NEKLFDSL 271
             ETQ       +D     P+E T+   + +L   +E+  A  ++ S  H    +L ++L
Sbjct: 177 LNETQSGEFLQIIDKMERTPAEVTNT-KLEALGMSLEKVQAFISSISADHPIFAELRENL 235

Query: 272 PENKRVSARGIEVG----------HIFY-FGTKYSLPMSA---TFKGADGKDHYVQMGSY 317
                     I+ G           +F  F  K+ L   A    +    G      +   
Sbjct: 236 EARDLWQYVKIDPGIVRGLAYYTGTVFEAFDVKHGLRAIAGGGRYDNLVGHLSDGAVQMS 295

Query: 318 GIGAMR--VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
             G     VV   +  +           +       + +   D+  R    +   +L   
Sbjct: 296 ACGFAMGDVVLGELIKATPAAQQQMKRDMDQSVSVDVYVLLADETRRREALQTVTQLRTA 355

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V +    +++  QF  A+        I+G        V +K+  T  + ++    + 
Sbjct: 356 GWRVDYSLTPQKVNKQFQAAENSKARFAAIIGG---EYPIVVLKNLATRDQMEIPAANLA 412

Query: 436 NYASHRFSN 444
                + SN
Sbjct: 413 QKIGEQMSN 421


>gi|126459143|ref|YP_001055421.1| histidyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
 gi|166228602|sp|A3MTI8|SYH_PYRCJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|126248864|gb|ABO07955.1| histidyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
          Length = 421

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/429 (11%), Positives = 126/429 (29%), Gaps = 41/429 (9%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSY 89
            + +  +G+  WLP    AL  + A++       G   +  P ++  + L  ++G+    
Sbjct: 7   HLRRPVRGMRDWLPHQYYALQQLEALLSRVAESFGYRRVETPVVEHFEVLARKAGQ--EI 64

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
             E+    D+  + +         +  +   ++   R + + ++    ++     P+ G 
Sbjct: 65  VNEIYYFRDKAGRELGLRFDMTVPIARVVSYNLDLPRPIRWYYFTKVFRY---DEPQHGR 121

Query: 150 MRSREFLMKDAY-SFDLTPEGSKHSYNKMFV--------SYLRIFHRLGLKSIPMRAESG 200
            R  EF           +P       + +          +Y+   +   +    +     
Sbjct: 122 YR--EFYQFGVELIGSASPRADAEVVHLLAESLAAAGASNYVIKLNDRRVVDKLLEGMGL 179

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE---------- 250
               D+ ++ +        +            PS+  +  +  +   + E          
Sbjct: 180 AAYKDVVYKALDKRYKAPREEVVGIMTRGGVPPSKAEELYEKATEMPLQEAVDFVTRIDK 239

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           +    YAA      + L  ++   + +    I  G  +Y G  +    +  +K A G   
Sbjct: 240 ELGGFYAAFV----KYLEAAVGLERLIFDLSIVRGLDYYTGVVF-EAFAGEYKLAVGGGG 294

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                      ++  A       +              +    I   D+        I  
Sbjct: 295 RYDDLLQLYSGVKTPALGFAIGVERLMEAVGLQAVEKPLDYY-IYIFDESAYQTAIYIAR 353

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVAD----LLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            L + G     +   + +      A      +G    VI+G K +    V+++       
Sbjct: 354 ELRRKGYSAVVELGDKGL----KDAFEYVLKIGTRFLVILGKKELEKGVVKVRDLQKREE 409

Query: 427 EDMSLEEVI 435
            +  ++E I
Sbjct: 410 VEKPIDEFI 418


>gi|303257591|ref|ZP_07343603.1| histidine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|330999632|ref|ZP_08323341.1| histidine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
 gi|302859561|gb|EFL82640.1| histidine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|329574138|gb|EGG55714.1| histidine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
          Length = 425

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/424 (11%), Positives = 110/424 (25%), Gaps = 28/424 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP                    G   +  P ++   L+    G   D   KEM  
Sbjct: 11  GMSDMLPEDAPLWHFFEKEASSLAKLYGYQHIRTPIVEQTRLFKRGIGEVTDIVEKEMYS 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                       P   + +   FR E   R    +  +F
Sbjct: 71  FVDSLNGDELSLRPENTASVVRACIEHNLLYEGPKRLWYMGPMFRHERPQRGRYRQFHQF 130

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD------LSHE 209
            M+         +  +          L I       +   + E      +       +H+
Sbjct: 131 GMEAMGFKGPDTDAEQLLMLNRLWKRLGIAPVRLELNCLGQLEDRKAYREVLIQYFEAHK 190

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL-F 268
            I+  D            +D   P      ++   L   + + +  + A  +   +    
Sbjct: 191 DILDEDASRRLYSNPLRILDTKNPDMQDLVNNAPKLYDSLGEESKQFLADLEAILKAEGI 250

Query: 269 DSLPENKRVSARGIEVGHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           D +   + V         +F       G + ++     +    G        +   G   
Sbjct: 251 DYVVNPRLVRGLDYYNLTVFEWVTDKLGAQGTICGGGRYDPLIGMLGGRD--APACGFAM 308

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  V+E   +            + +    +  +             RL           
Sbjct: 309 GIERVLELMKECGVKPESRECDVYVVWDKALYLN-------ALSAAERLRDADIATIIHS 361

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-----GIREDMSLEEVINYA 438
              + G+Q   AD  G    +++G+   +  KV +K         G ++ ++++E ++  
Sbjct: 362 GSMKFGNQMKRADASGALYALVIGADEAAAGKVGLKALRENLEGYGEQKTLTIDEAVSLL 421

Query: 439 SHRF 442
               
Sbjct: 422 GQHV 425


>gi|223040985|ref|ZP_03611245.1| histidyl-tRNA synthetase [Campylobacter rectus RM3267]
 gi|222877741|gb|EEF12862.1| histidyl-tRNA synthetase [Campylobacter rectus RM3267]
          Length = 415

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 63/417 (15%), Positives = 117/417 (28%), Gaps = 20/417 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP      + +  I  E     G   +  P L+   L+  S     D  GKEM +
Sbjct: 7   GMKDVLPPQSGLYERIIKICEEVAKNYGYEFVLSPHLEQTALFRRSVGESSDIVGKEMYQ 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+    +   P     +   F             ++     FR E   +    R REF
Sbjct: 67  FEDKGGNDVCLRPEGTAGVVRAFIEAKFDRTGGVRRYFYHGSMFRYERPQKG---RLREF 123

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRI--------FHRLGLKSIPMRAESGPIGGDLS 207
                  F         S   M                + LG  +         +    +
Sbjct: 124 HQFGCECFGEPSVYEDASVILMINEIFSRLGIKTKLLINSLGDAASMGAYRQKLVKFLDA 183

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEK 266
           HE  +  D    ++      +D    S    +++   +   + ++    +    ++ +  
Sbjct: 184 HEEQICEDCKRRKLTNPIRVLDCKAQSCQKIYENAPLIIGSLNDECAGEFKKLQEILSGN 243

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
             +   + K V          F F    S  + A    A G  +   +    +G      
Sbjct: 244 GVEFEIDPKLVRGLDYYCKTAFEF---VSSEIGAKSAVAGGGRYDRLVEY--LGGKASYG 298

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                  +    I     +    S + I A D    DA  KI   L K    V      +
Sbjct: 299 VGFAMGIERIMEILGGRESQSARSGVYIGAMDADGVDAVYKIAINLRKS-IPVLVSYEPK 357

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++      AD     + + VG   +   K+ +K       + + L ++        +
Sbjct: 358 KLQKHLNAADNANTRICLCVGEDELKSGKIWLKDLSEKAEKTLDLADLETELKRILN 414


>gi|242277623|ref|YP_002989752.1| histidyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
 gi|259511943|sp|C6BVJ9|SYH_DESAD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|242120517|gb|ACS78213.1| histidyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
          Length = 412

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/393 (15%), Positives = 112/393 (28%), Gaps = 19/393 (4%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +    R+  +  G  E+ VP L+  +L+  S     D   KEM    DR  +++   P  
Sbjct: 24  MEKTARDVFSSYGYGELRVPILEKTELFCRSIGEETDVVQKEMYTFPDRKGRSLTMRPEA 83

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   +  +          F+     FR E        R R+F   DA  F      +
Sbjct: 84  TAGIVRAYVENKIYQPGKVSKFFTFGPMFRYERPQAG---RMRQFHQIDAEIFGAAEPQA 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                 M  S+L       L          E  P       +F+   D  +    C +  
Sbjct: 141 DAEVLLMLSSFLSNIGLEKLSFELNSLGCPECRPKYNQALKDFLASLDREQLCDDCQRRM 200

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA------RG 281
              P+   +    +  +L                 H + +   + E            RG
Sbjct: 201 DTNPLRVLDCKSKNCKALTENAPTLPDHLCGECREHFDTVIALIDEAGLQYTLNPRLVRG 260

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           ++      F        + T     G+   +     G   +      I  +   + +   
Sbjct: 261 LDYYQRTAFEVTSGDIGAQTAVAGGGRYDGLVESLGGPKKVP----AIGFACGMERLAML 316

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
                   +   +   D+           +L + G         + + +Q   A+ +   
Sbjct: 317 LEGEFEPAADFYVALVDERAAKDSLIFGEKLRRSGLKGEVGFTAKSMKAQLRHANKINAQ 376

Query: 402 LQVIVGSKFVSDSKVEIKHRL-TGIREDMSLEE 433
              I G++   +  V IK     G +E +S +E
Sbjct: 377 KCFIFGAEEFENGTVTIKDMAEGGEQETVSRDE 409


>gi|313204242|ref|YP_004042899.1| glycyL-tRNA synthetase [Paludibacter propionicigenes WB4]
 gi|312443558|gb|ADQ79914.1| glycyl-tRNA synthetase [Paludibacter propionicigenes WB4]
          Length = 515

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 102/355 (28%), Gaps = 48/355 (13%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  EM   A+   K  +   T + +  +           +PF   QI   FR+E+  R  
Sbjct: 199 FSTEMGSTAEGAMKIYLRPETAQGIFVNFLNVQKTGRMKIPFGIAQIGKAFRNEIVARQF 258

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
           + R REF   +   F   P      +       L+    LGL             GD  +
Sbjct: 259 IFRMREFEQMEMQFFVR-PGEEMKWFEHWKAFRLKWHKALGL-------------GDQKY 304

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            F             +    + P                        +     +H+   F
Sbjct: 305 RFHDHDKLAHYANAATDIEFEMPF----------------------GFKEVEGIHSRTDF 342

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           D     K         G    +           +             S    + +     
Sbjct: 343 DLSSHEK-------FSGKNIKYFDPEINQSYVPYVIETSIGVDRTFLSIMAASYKE--ET 393

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +E       +  P  +AP K  ++ +   D    +   +I   L        +D+    I
Sbjct: 394 LEGGDSRVVLTLPPVLAPVKACVMPLVKKD-GLPEIAREIINDLK-FDFKCAYDEKD-SI 450

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G ++   D +G P  + V  +   D  V I+HR + ++E +++ ++        +
Sbjct: 451 GKRYRRQDAVGTPFCITVDHQTPEDKSVTIRHRDSMLQERVAIADLHKIIGDAVN 505


>gi|74316613|ref|YP_314353.1| histidyl-tRNA synthetase [Thiobacillus denitrificans ATCC 25259]
 gi|123745548|sp|Q3SL69|SYH_THIDA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|74056108|gb|AAZ96548.1| Histidyl-tRNA synthetase, class IIa [Thiobacillus denitrificans
           ATCC 25259]
          Length = 419

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 105/413 (25%), Gaps = 24/413 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP    A     AI+R+   R G  EM  P L+   L+  + G   D   KEM    D  
Sbjct: 15  LPDAADAWQGFEAIVRDWLRRYGYREMRTPILEHTGLFKRAIGEVTDIVEKEMYTFVDEL 74

Query: 101 DKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREF 155
           +   +   P            H   Y       +     FR E       R       E 
Sbjct: 75  NGESLTLRPEGTASSVRAVIQHNLLYDG-GKRLWYSGPMFRHERPQKGRYRQFHQVGVEA 133

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIF-HRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           L       D           +       +  + LG      R  S  I    +H  ++ A
Sbjct: 134 LGFAGPDVDAELIVMCADLWRELGIAPTLQLNTLGDHGARQRHRSKLIAYYEAHRDVLDA 193

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT------SDVHNEKLF 268
           D            +D   P+      +   L   +E     +         ++    ++ 
Sbjct: 194 DAQRRLHSNPLRILDSKNPAMQALNAEAPRLLDELEDEALNHFDALQGLLRANGIAFEIN 253

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             L        R +        G + ++     + G   +       + G          
Sbjct: 254 PRLVRGLDYYNRTVFEWVTDQLGAQGTVCAGGRYDGLVEQLGGKPAPAAGFAMGIERLLA 313

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +  +     +                    Q            L   G  V     G   
Sbjct: 314 LVETSGKPIVPAVPDAYIVHAGDTADAFAWQAAA--------TLRGAGLAVVLHCGGGSF 365

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYASH 440
            SQ   AD       VI+G +  +  +V +K  R T  +  + L   I Y   
Sbjct: 366 KSQMKKADASRARYAVIIGDEEAAAQQVSVKPLRGTAEQTRVELALAIEYLKK 418


>gi|239815179|ref|YP_002944089.1| histidyl-tRNA synthetase [Variovorax paradoxus S110]
 gi|239801756|gb|ACS18823.1| histidyl-tRNA synthetase [Variovorax paradoxus S110]
          Length = 440

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/408 (14%), Positives = 105/408 (25%), Gaps = 33/408 (8%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
                   +R    R G   M  P ++   L+V   G   D   KEM    D  +   + 
Sbjct: 30  LWSWFEQTVRGLLARYGYQYMLTPVVEPTALFVRGLGEVTDIVEKEMYSFTDAMNGDKLT 89

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
                            +  N P   + +   FR E   +    R R+F   D  +    
Sbjct: 90  LRPEATAGIVRAMVEHNALYNGPLRLWTMGPMFRHERPQKG---RYRQFHQLDVEALGFP 146

Query: 167 PEG------------SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                           +              + LG  +         I    +H  ++ A
Sbjct: 147 GPDVDAELILMVRALWRELGLAEGEHVRLEINSLGQPAERQAHREALIRHFEAHAGVLDA 206

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEK-----LF 268
           D            +D   P+     +    L   + E+  A + A   V +       + 
Sbjct: 207 DAQRRLHSNPLRILDTKNPAMQAVVEAAPQLMDFLGEESRAHFDAVRAVLDAAGLAYRVN 266

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             L          +        G++ ++     + G  G+       + G G        
Sbjct: 267 PRLVRGMDYYNLTVFEWVTDQLGSQGTVCGGGRYDGLIGQMGGKPAPAVGFG-------- 318

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           +        I       P                     +  +L   G  V     G  +
Sbjct: 319 LGIERLLLLIQELRLPVPAAAPAAYAIVPSAAALPQVMAVLEQLRAAGVSVLQHAGGGSM 378

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGIREDMSLEEV 434
            +QF  AD  G    ++ G   +S  +V +K      G +    L EV
Sbjct: 379 KAQFKKADASGARYALVFGEDELSRGEVTVKSLREGGGEQVARPLAEV 426


>gi|116495010|ref|YP_806744.1| histidyl-tRNA synthetase [Lactobacillus casei ATCC 334]
 gi|191638516|ref|YP_001987682.1| histidyl-tRNA synthetase [Lactobacillus casei BL23]
 gi|122263573|sp|Q038S0|SYH_LACC3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558690|sp|B3WEM3|SYH_LACCB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|116105160|gb|ABJ70302.1| histidyl-tRNA synthetase [Lactobacillus casei ATCC 334]
 gi|190712818|emb|CAQ66824.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
           [Lactobacillus casei BL23]
 gi|327382552|gb|AEA54028.1| Histidyl-tRNA synthetase 2 [Lactobacillus casei LC2W]
 gi|327385749|gb|AEA57223.1| Histidyl-tRNA synthetase 2 [Lactobacillus casei BD-II]
          Length = 427

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 64/403 (15%), Positives = 113/403 (28%), Gaps = 24/403 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V A+ R+   +    E+  P  ++ D++  S     D   KEM    D+ D+ M   
Sbjct: 20  WQQVEAVARKIFAQYQYHEIRTPIFENVDVFSRSAGDTSDIVTKEMYTFKDKGDRMMALR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P+  Y +   FR E        R R+F      +F  
Sbjct: 80  PEGTAGVVRAYVENKLYGPEHAKPYKVYYLGPMFRYERPQSG---RQRQFHQIGVEAFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
                      +    L       LK +       P      H  +V   T         
Sbjct: 137 DSPVLDAETLALAKQLLEALGAKHLKFVINSLGD-PATRKAFHAALVDYLTPFKDQLSED 195

Query: 226 DFMDFPIPSENT------DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKR 276
             +                  +I++    +  +  P A       + L   L    E   
Sbjct: 196 SKVRLVKNPLRILDSKDKHDQEIVANAPSILDYLTPEAQQHFDRVKTLLQGLGIPFEVDA 255

Query: 277 VSARGIEV--GHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
              RG++     IF             T   A G+ + +     G     +  A+     
Sbjct: 256 TMVRGLDYYNHTIFEVMSDDKVFGGGYTTILAGGRYNGLVEELGGPETPGIGFAMGVERL 315

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                               I   DQ       ++   + + G     D MG +   QF 
Sbjct: 316 MLLMQGELP----TAQPDAYIVTIDQGADQEALQMLTAIRQQGFTGEMDYMGRKPKGQFK 371

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            A+     L + +G    +   V+IK+  TG ++     +V+ 
Sbjct: 372 AANKANAKLVLTIGESERAAGTVQIKNMATGDQQAFPQADVLA 414


>gi|322706404|gb|EFY97985.1| glycyl-tRNA synthetase 1 [Metarhizium anisopliae ARSEF 23]
          Length = 650

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 58/143 (40%), Gaps = 6/143 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              +++   +     G  R++ +++E  +  +       V    I +  +K      +++
Sbjct: 484 ETTREYTPNVIEPSFGIGRILYSILEHVYWSRPQDVAREVLSLPILVAPVKVLLVPLSNN 543

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +   + + +RL  +G     D     IG ++A  D LG PL + V    + D  V +
Sbjct: 544 VGFKPVIKALASRLRAMGIANNVDSSSVSIGRRYARNDELGTPLGITVDFYTLKDGSVTL 603

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           + R + ++   S +E++    + 
Sbjct: 604 RERDSRVQVRASQDEIVEAIRNL 626



 Score = 45.9 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           G+Y + P G   L N+    R+        +E+    +    +   SG  D +   M R 
Sbjct: 46  GLYDYGPPGCGMLANIVNEWRKHFVIEENMLEVDCTAITPEAVLKTSGHVDRFADWMCRD 105

Query: 97  ADRNDK 102
             + + 
Sbjct: 106 PAKGEY 111


>gi|310658348|ref|YP_003936069.1| histidyl-tRNA synthetase [Clostridium sticklandii DSM 519]
 gi|308825126|emb|CBH21164.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
           [Clostridium sticklandii]
          Length = 430

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 131/429 (30%), Gaps = 41/429 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G    LP  Q+  D++   I +   + G   +  P ++ AD L V+SG      ++ + 
Sbjct: 12  PGFMELLPNEQRIFDDIATKILKVYEKNGCYPIDTPVIEKADVLLVKSG---GETEKQVY 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +    +                H  +    PF  YQ+   +R E   R    R REF
Sbjct: 69  AFQKGKNDLALRFDLTVPFARYVAQH-INELEFPFKRYQLGKVYRGERNQRG---RYREF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              D    +       +    +     + F  + L +   +  +  I      E++ + +
Sbjct: 125 YQLDIDVINKDKLSVDND-AWVISLASQAFKEIKLPNYKFQISNRKIL-SGIFEYLQIEN 182

Query: 216 TGETQVFCSKDF----MDFPIPSENTDFDD------------------IISLNSIVEQWT 253
           + ET     K       +F    E    ++                  I  L +     T
Sbjct: 183 SFETMNLIDKYDKMPTNEFKAELEKLIGEEKSSFINKIMSIDGSSVQIINQLKAFNINET 242

Query: 254 APYAATSDVHNEKLFDSLP------ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGA 305
                       K+ D L       +      RG++   G +F      +    +   G 
Sbjct: 243 YAEGVNEIARVVKMLDILKVDEKEYDINLKIIRGLDYYTGTVFETKLIGNESYGSICSGG 302

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
              +         +  + +   +       + I + D+    +     I        D C
Sbjct: 303 RYDNLAENYTDTVLPGVGISIGLTRLFFVLQEIGFIDTYNLNRSDDFIILPLGDT-MDYC 361

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
             I  +L   G           +  +   A+ L     +IVG + V +  V+IK  L+G 
Sbjct: 362 SIILDKLLANGSRASIYFDDASLKKKLKYANNLKIQKVIIVGEEEVKNKIVKIKDMLSGE 421

Query: 426 REDMSLEEV 434
            + + ++++
Sbjct: 422 EKIIKIDDL 430


>gi|302505475|ref|XP_003014444.1| hypothetical protein ARB_07006 [Arthroderma benhamiae CBS 112371]
 gi|291178265|gb|EFE34055.1| hypothetical protein ARB_07006 [Arthroderma benhamiae CBS 112371]
          Length = 1327

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 84/284 (29%), Gaps = 23/284 (8%)

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +              ++         E +  AD     +   K     P+    T  + 
Sbjct: 351 RQHMQNEMAHYATDCWDAELFTSYGWIECVGCADRSAYDLSVHKKKTGAPLVVRQTRAEP 410

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSL----------------------PENKRVSA 279
           +      V+     +       ++ + +++                       E   V  
Sbjct: 411 LRIEEWQVDIDKKKFGPRFKKDSKTVENAIEALTQDMREKLSLDLEKNGKIEIEVDGVGE 470

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
             +E+G       K     +      +  +    +G      M               + 
Sbjct: 471 GKVEIGKDLVQIEKRMRVENVREYTPNVIEPSFGIGRILYCLMEHAYWSRPDDEARGVLS 530

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P +VAP K+ L+ +  H    +   +++  +L ++G     DD    IG +++  D LG
Sbjct: 531 FPPAVAPTKVLLVPLSTH-ASFQPLIQRLTLKLRRLGVSNRVDDSSASIGKRYSRNDELG 589

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            P  +    + V D+   ++ R T  +   S +E+ N       
Sbjct: 590 TPFGITADFQSVKDNTFTLRDRDTTKQVRASEDEICNAVKSLVD 633



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     NV  + R+        +E+    L   ++   SG  D +   M +
Sbjct: 36 SGLYDYGPPGCALQANVVDLWRKHFVLEEDMLEVDTSMLTPHEVLKTSGHVDKFADWMCK 95


>gi|78779008|ref|YP_397120.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
 gi|123755104|sp|Q31BR1|SYH_PROM9 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|78712507|gb|ABB49684.1| histidyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
          Length = 426

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 117/412 (28%), Gaps = 23/412 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP       NV  I+ E+  R    E+  P L+  +L++       D   KEM  
Sbjct: 9   GTVDLLPDQLIKWQNVEKIVLEQLARASIKEIRTPILEMTELFIRGIGEGTDVVSKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +++    P     +      +  S       +Y +   FR E        R R+F
Sbjct: 69  FLDRGERSCTLRPEGTASVARALIQNGISSNPFQKLWY-MGPMFRYERPQAG---RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                         S      +    L       L              +    F+   +
Sbjct: 125 HQLGVEFIGYESVRSDVEIIALAWDILGKLGIKELNLEINSLGDIDDRLNFQKSFLKWLE 184

Query: 216 TGETQVFCSKDFMDFPIP----------SENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             +  +           P          ++    +  I  N + E+    Y+      N 
Sbjct: 185 KNKDSLDLDSQNRINKNPLRILDSKNMQTKKALENAPILFNFLSEKSHKRYSDLKKQLNV 244

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                +     V          F   T  +L   AT  G    D+ ++     +G     
Sbjct: 245 LQIPYVENFNLVRGLDYYTHTAFEI-TSCALGSQATVCGGGRYDNLIKQ----MGGPNTP 299

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
           A       +   ++    +   + + I I     +       +  +L      V  D  G
Sbjct: 300 AIGFAIGLERLILLAGKDLEVPRNTDIYIINQGLIAESLAMDLSRKLRNYDLLVELDLSG 359

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
                QF  A+ L     +++G    ++ +  I+        + + EEVI++
Sbjct: 360 ASFSKQFKKANKLKSKSIIVIGDDEAANKEFIIRLFD--HSGNANKEEVISF 409


>gi|76162547|gb|AAX30465.2| SJCHGC03807 protein [Schistosoma japonicum]
          Length = 106

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 1/88 (1%)

Query: 359 QVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
             C +   ++  RL   G  V  D D G  +  +     LL     ++VG K +++  V 
Sbjct: 11  SACDEYAIEVKNRLHDAGFMVSVDTDPGRTLNKKIRNGQLLQNNFILVVGEKEIANGTVN 70

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ R   +  +  +E VI        + 
Sbjct: 71  VRTRDNKVHGEHLVEHVIERFRQLAESR 98


>gi|298491438|ref|YP_003721615.1| histidyl-tRNA synthetase ['Nostoc azollae' 0708]
 gi|298233356|gb|ADI64492.1| histidyl-tRNA synthetase ['Nostoc azollae' 0708]
          Length = 462

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/449 (12%), Positives = 125/449 (27%), Gaps = 43/449 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV--------------- 81
            G   +LP  ++    +  IIR      G   +  P ++  ++                 
Sbjct: 13  SGFPEFLPSEKRLEVYLLDIIRRVFESYGFTPIETPAVERLEVLQAKGNQGDNIIYGIDP 72

Query: 82  -----------ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
                      +SG      + +         A I    +E             +R    
Sbjct: 73  ILPPNRQAEKDKSGETALEARALKFDQTVPFAAYIARHLNELTFPFSRYQMDMVFRGERA 132

Query: 131 TFYQIQLKFRDELR----PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
              + +   + ++      +  ++   +        F+    G               F 
Sbjct: 133 KDGRFRQFRQCDIDVVARGKLSLLYDAQMPAIITEIFEAINIGDFAIRINNRKILTGFFQ 192

Query: 187 RLGLKSIPMRAESGPIGG-DLSHEFIVLAD-------TGETQVFCSKDFMDFPIPSENTD 238
            + +    ++A    I   +   E  V ++       + +T+       +D  +      
Sbjct: 193 SVEVPENQIKACIAIIDNLEKIGEAKVKSELEKEGISSEQTEKIIEFIKIDGSVDDVLDK 252

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            + +       EQ+       + V N      + + +      I  G  +Y GT Y   +
Sbjct: 253 LNHLAQSFPEAEQFNLGVTELATVINGVRDLGVADKRFCIDLSIARGLNYYTGTVYETTL 312

Query: 299 SA-TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN---- 353
                 G+       +         ++    I             +     +S       
Sbjct: 313 IGHEALGSICSGGRYEELVGMFLGEKMPGVGISIGLTRLISRLLKAGILNTLSATPTQVV 372

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           +    +       K+  +L + G +V  +     +G QF  AD  G    VI+G+   + 
Sbjct: 373 VVNMQEDLIAVYLKVSQQLRQAGINVVTNFEKRPLGKQFQAADKQGIQFCVIIGADEAAA 432

Query: 414 SKVEIKHRLTGIREDMSLEEVINYASHRF 442
            K  +K+  +G + +++L ++      R 
Sbjct: 433 QKSSLKNLKSGEQVEVALADLAEEIKRRL 461


>gi|47223387|emb|CAG04248.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 751

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 72/285 (25%), Gaps = 25/285 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 438 FRQHMDNEMAHYACDCWDAETKTSYGWIEIVGCADRSCYDLACHARVTKVPLVAEKLLKE 497

Query: 241 DIISLNSIVEQW---TAPYAATSDVHNEKLFDSLPENKRVSARGIEV------------- 284
            I  +   V Q+               +   D L           E              
Sbjct: 498 PISLILVNVVQFEPNKGAMGKAYKKDAKIAMDFLSMCDECYITDQEKLLSETGEFTIETE 557

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           G  F              K    ++    +     G  R++  + E +   +      + 
Sbjct: 558 GKTFKLTKDMVCVKRFQ-KTLHVEEVVPNVIEPSFGIGRIMYTIFEHTFHVREGDEQRTF 616

Query: 345 APFKISLINIKAH------DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             F  ++   K        +Q        +   L++ G     DD    IG ++A  D +
Sbjct: 617 FSFPATVAPYKCSVLPLSPNQEFVPFVRSLSEELTRNGVSHKVDDSSGSIGRRYARTDEI 676

Query: 399 GFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHR 441
           G    + +    V+       ++ R +  +    + E+       
Sbjct: 677 GVAFGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPGIVRDL 721



 Score = 50.9 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+  + R+        +E+    L    +   SG  D +   M++
Sbjct: 154 SGLYDFGPMGCALKNNILQVWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADYMVK 213

Query: 96  LADRNDK 102
                + 
Sbjct: 214 DVKNGEC 220


>gi|229549690|ref|ZP_04438415.1| histidyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255972388|ref|ZP_05422974.1| histidyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|312951289|ref|ZP_07770190.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|229305170|gb|EEN71166.1| histidyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255963406|gb|EET95882.1| histidyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|310630725|gb|EFQ14008.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|315152595|gb|EFT96611.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0031]
 gi|315159885|gb|EFU03902.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0312]
          Length = 433

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 107/396 (27%), Gaps = 11/396 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDIVSKEMYDFYDKGDRHVTLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  +         P+  Y +   FR E      + +  +  ++   S + 
Sbjct: 80  PEGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYERPQAGRLRQFHQIGVEAFGSENP 139

Query: 166 ------TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                                   + + LG K          I     H   +  D+   
Sbjct: 140 ALDVEIMAMALDFFKQLGIQQIKLVINSLGDKETRATYRQALIDYLEPHMAELSEDSQRR 199

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                   +D     +     +  S+   + E   A + A +D+ +        ++  V 
Sbjct: 200 LHENPLRVLDSKDKKDKVIVAEAPSILEYLNEPSKAHFEAVTDMLDLLEIPYEIDSNMVR 259

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                   IF   ++     + +   A G+ + +     G         +          
Sbjct: 260 GLDYYTHTIFEIMSEAPKMGAQSTICAGGRYNGLVEELGGPDTPGFGFGMGIERVLLTME 319

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +         +         A  ++   +   G     D M  +  +QF  AD L
Sbjct: 320 AEEVVIPALSELDAYVVGIGSETNVAALQLVQSIRNFGFSADRDYMNRKPKAQFKTADKL 379

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              L + +G   +++  V +K   T   +   L  +
Sbjct: 380 QAKLVLTIGENELNEGIVNVKSMATREEKAFPLSTI 415


>gi|152987807|ref|YP_001346696.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
 gi|166228597|sp|A6V0W1|SYH_PSEA7 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|150962965|gb|ABR84990.1| histidyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
          Length = 429

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/425 (12%), Positives = 110/425 (25%), Gaps = 26/425 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP    A   +        +  G  E+ +P L+  +L+        D   KEM  
Sbjct: 10  GMNDILPEQTPAWRYLERTFAGLLDGYGYSEIRLPILEFTELFARGIGEGTDVVDKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P            H  S        +     FR E +P+ G  R    
Sbjct: 70  FLDRNGESLTMRPEGTAGCVRAVLEHGLSGGGQVQKLWYTGPMFRYE-KPQKGRYRQFHQ 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS------HE 209
           +  + ++       ++       +             +     S               E
Sbjct: 129 IGVEVFNLPGPDIDAELIILTWRLWQKLGMADAVTLQLNTLGSSEARARYREALVAYLQE 188

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL----NSIVEQWTAPYAATSDVHNE 265
                D    +   +          E+T    + +         E         + +   
Sbjct: 189 RFEQLDEDSQRRMTTNPLRILDSKVESTQALLVGAPTLHDYLDEESIAHFEGLKARLDAV 248

Query: 266 ----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               ++   L        R          G + ++     + G   +         G   
Sbjct: 249 GLRYEINQKLVRGLDYYCRTAFEWVTDKLGAQGTVCGGGRYDGLVSQFGGKPTPGVGFAM 308

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDV 379
                 ++  + D            +  +         +          +L     G  +
Sbjct: 309 GVERLVLLLETLDVIPAELNRPADLYVCAFGEPAELAALALAE------QLRSSIPGIRL 362

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYA 438
             +       SQF  AD  G    +I+G   V++  V  K  R  G ++ ++ + +  + 
Sbjct: 363 LVNAGAGSFKSQFKKADKSGARYALILGEDEVANRVVGFKPLRDEGEQQSIAWDALPEHL 422

Query: 439 SHRFS 443
           +   +
Sbjct: 423 AACLA 427


>gi|222833149|gb|EEE71626.1| predicted protein [Populus trichocarpa]
          Length = 152

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 3/151 (1%)

Query: 296 LPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
             + A + G DG  H    +    +G++     ++   H G    W          L   
Sbjct: 3   ERLDAEYVGEDGDRHRPVMLHRAIVGSLERFIGILIEQHAGAMPTWL--APVQAAVLNIT 60

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            A     R+  +K+       G  V  D   E+I  +     L   P  ++ G K  +  
Sbjct: 61  DAQADYVREVAQKLQKAFPNQGLRVATDLRNEKITYKIREHSLQKLPYILVAGDKEKAAG 120

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            V ++ R       MS++  I   +   +  
Sbjct: 121 AVAVRARGNKDLGVMSVDAFIELVAKDIAAK 151


>gi|219130142|ref|XP_002185231.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403410|gb|EEC43363.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 503

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 67/433 (15%), Positives = 134/433 (30%), Gaps = 42/433 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P   +    +    R      G  E   P L+S  L+  ++G  +    ++   
Sbjct: 83  GTRDFYPQDMRLRTWLFDHWRAVAKSFGFSEYDAPVLESEALYVRKAG--EEVTTQLYNF 140

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+ D+A+   P     +  +  +  K    +P  +Y I   +R E   R    R   F 
Sbjct: 141 VDKGDRAVALRPEMTPSLARMVMA-QKGGLPMPLKWYSIPQCWRYERMTR--GRRREHFQ 197

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                     PE        M   +  +      + + ++  S  + G++     +  + 
Sbjct: 198 WNMDVWGVAGPEAEAELMAAMVTFFENVGLTA--EDVGIKVNSRLVIGEVLDSLGIPEEK 255

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ------------------------- 251
                         PI +   D +++    S+VE+                         
Sbjct: 256 FAVTCVLVDKLEKVPIEAIQGDLEELGLDRSVVEKLLDVLTNKSLDALKGTLGEDSQAVK 315

Query: 252 WTAPYAATSDVHNEK---LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             + +    + +N +   LFD+          GI        G   ++     +      
Sbjct: 316 ELSQFMTLCEAYNIQNWILFDASVVRGLAYYTGIVFEAFDRRGELRAIAGGGRYDKLLET 375

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              VQ  + G G    V   +    D                   + A +Q        +
Sbjct: 376 FGGVQTPAAGFGFGDAVIVELLKERDVLPSFES------TGVDTVVFAMNQDLYAPAVGV 429

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            + L K G  V     G+++   F  AD +G    V+VG+    + +V IK    G ++ 
Sbjct: 430 ASVLRKAGQSVDVVLEGKKLKWVFKHADRIGAKYCVVVGADEYLNGEVAIKDLSGGAQKS 489

Query: 429 MSLEEVINYASHR 441
           + ++++ N+ S  
Sbjct: 490 VKIDDLSNWVSDE 502


>gi|332284653|ref|YP_004416564.1| histidyl-tRNA synthetase [Pusillimonas sp. T7-7]
 gi|330428606|gb|AEC19940.1| histidyl-tRNA synthetase [Pusillimonas sp. T7-7]
          Length = 429

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/427 (14%), Positives = 116/427 (27%), Gaps = 38/427 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      + + A +RE     G   M  P L+   L+    G   D   KEM  
Sbjct: 13  GMKDILPDTSAEWETLEATVREWLAAYGYRNMRTPVLEHTRLFTRGIGEVTDIVEKEMYS 72

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   Y +   FR E   R    +  + 
Sbjct: 73  FTDALNNEHLTMRPEFTAGMVRASIEHNMLYDRPHRVYAMGPVFRHEKPQRGRYRQFHQI 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            ++         +             L +       +   +A+      +   E++    
Sbjct: 133 DVEALGFAGPDIDAELIVMLGRLWKMLGLSDIRLELNSLGQAQERAAHRNALIEYLEQHH 192

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
               +    +   + P+   +T    +  + +   +      A S  H + + D L +  
Sbjct: 193 DVLDEEARRRMHTN-PLRVLDTKNPAMQDMANNAPRLFDFLGAESLAHFQGVCDRLKDAG 251

Query: 276 RVSA------RGIEVG--HIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIG 320
                     RG++     +F       G + ++     + G              + IG
Sbjct: 252 IEYRLNPRLVRGLDYYNLTVFEWVTDRLGAQGTVCGGGRYDGLIELLGGKPAPAVGFAIG 311

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R++    +SS           V     +   + A                   G  V 
Sbjct: 312 VERLLDLCAQSSDALLSPECQVYVIHQGAAAQRLAAQLAEQM----------RDEGLRVI 361

Query: 381 WDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG------IREDMSLE 432
                   G +  F  AD  G  L VI+G   ++     IK            +E + L+
Sbjct: 362 V--HAGSAGFKSQFKRADASGAGLAVILGDDELASGSASIKWLRESALEGQPQQETVPLD 419

Query: 433 EVINYAS 439
            ++    
Sbjct: 420 RLMKELK 426


>gi|325294499|ref|YP_004281013.1| histidyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325064947|gb|ADY72954.1| Histidyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 410

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 63/401 (15%), Positives = 114/401 (28%), Gaps = 22/401 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            + V    +   N+ G  E+ +P  + A L+  S     D   KEM    D+  + +   
Sbjct: 20  FEKVVETFKNVVNKAGFREVILPIFEEAGLFSRSVGETTDIVQKEMYVFEDKGGRVIALR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         +  H    +     ++ +   FR E        R R+F       F L+ 
Sbjct: 80  PEGTASAVRAYIEHGVFAKEPFTKWFYVGPMFRFERPQAG---RKRQFFQAGCEVFGLSS 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
            G+     K+    L+         +                 ++       +  C    
Sbjct: 137 PGADAEVIKVACDILKALKIDYSLELNSIGCEK--CRSEYKRALIEFLESRKEKLCEDCI 194

Query: 228 MDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFDSLP------ENKRVS 278
             F           + +  +IV    + T         H EKL + L             
Sbjct: 195 KRFERNPLRVLDCKVETCQNIVAEAPKITDFLCNECSEHFEKLKEYLALLDVKFVENPFL 254

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RG++      F  K     + +   A G+   +     G          +  +      
Sbjct: 255 VRGLDYYTKTVFEFKSKKLGAQSTILAGGRYDKLVSQLGGPETP-----ALGFAMGVDRA 309

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +        K   I +    +       K+   L + G  V  D       +Q   AD +
Sbjct: 310 MLLLPEIEEKREGIFLVTRGEKAYKEGLKLLRLLREKGFRVEIDHRQGSFKAQMKAADRV 369

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEEVINYA 438
                VI+G   V +     K   TG +E + ++E +I   
Sbjct: 370 KAKYVVIIGESEVEEGFFSFKELETGKQERVENIEALIARF 410


>gi|301066573|ref|YP_003788596.1| histidyl-tRNA synthetase [Lactobacillus casei str. Zhang]
 gi|300438980|gb|ADK18746.1| Histidyl-tRNA synthetase [Lactobacillus casei str. Zhang]
          Length = 427

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 63/402 (15%), Positives = 115/402 (28%), Gaps = 22/402 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V A+ R+   +    E+  P  ++ D++  S     D   KEM    D+ D+ M   
Sbjct: 20  WQQVEAVARKIFAQYQYHEIRTPIFENVDVFSRSAGDTSDIVTKEMYTFKDKGDRMMALR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P+  Y +   FR E        R R+F      +F  
Sbjct: 80  PEGTAGVVRAYVENKLYGPEHAKPYKVYYLGPMFRYERPQSG---RQRQFHQIGVEAFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
                      +    L       LK +                 +      + Q+    
Sbjct: 137 DSPVLDAETLALAKQLLEALGAKHLKFVINSLGDPATRQAFHAALVDYLTPFKDQLSEDS 196

Query: 226 DFMDFPIP-----SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKRV 277
                  P     S++    +I++    +  +  P A       + L   L    E    
Sbjct: 197 KVRLVKNPLRILDSKDKHDQEIVANAPSILDYLTPEAQQHFDRVKTLLQGLGIPFEVDAT 256

Query: 278 SARGIEV--GHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
             RG++     IF             T   A G+ + +     G     +  A+      
Sbjct: 257 MVRGLDYYNHTIFEVMSDDKVFGGGYTTILAGGRYNGLVEELGGPETPGIGFAMGVERLM 316

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                              I   DQ       ++   + + G     D MG +   QF  
Sbjct: 317 LLMQGELP----TAQPDAYIVTIDQGADQEALQMLTAIRQQGFTGEMDYMGRKPKGQFKA 372

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           A+     L + +G    +   V+IK+  TG ++     +V+ 
Sbjct: 373 ANKANAKLVLTIGESERAAGTVQIKNMATGDQQAFPQADVLA 414


>gi|111023856|ref|YP_706828.1| histidyl-tRNA synthetase [Rhodococcus jostii RHA1]
 gi|123045389|sp|Q0S1B6|SYH_RHOSR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|110823386|gb|ABG98670.1| histidine--tRNA ligase [Rhodococcus jostii RHA1]
          Length = 423

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 112/393 (28%), Gaps = 31/393 (7%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   + +P  +   L+        D   KEM   ADR D+++   P     +      H
Sbjct: 38  AGYGHIELPIFEDTGLFARGVGESTDVVSKEMYTFADRGDRSVTLRPEGTAGVMRAVIEH 97

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                 LP         FR E RP+ G  R  +  +         P             +
Sbjct: 98  GLDRGQLPVKLSYAGPFFRYE-RPQAGRYRQLQ-QVGVEAIGVDDPALDAEVIAIADAGF 155

Query: 182 LRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGET-----QVFCSKDFMDFPIPS 234
             +        I    +    P   +   EF+      E      ++   +   D     
Sbjct: 156 RGLGLDGFRLEITSLGDDTCRPQYRERLQEFLFALPLDEETRRRAEINPLRVLDDKRKEV 215

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY----- 289
                D  + L+ + +   A +       +      +   + V          F      
Sbjct: 216 REMTADAPLMLDHLSDTAKAHFDEVLAHLDALSVPYVVNPRMVRGLDYYTKTTFEFVHDG 275

Query: 290 FGTKYSLPMSATFKGADGK--DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            G +  +     + G   +     +    +G+G  R V A+              +    
Sbjct: 276 LGAQSGIGGGGRYDGLMAQLGGQPLSGIGFGLGVDRTVLALAA---------EGKTAGST 326

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVI 405
               +      +  +     I  +L   G  V         G +     AD  G  L ++
Sbjct: 327 ARCEVFGVPLGEEAKAKLVVIAQQLRAQGIRVDLAYGNR--GVKGAMKAADRSGAALALV 384

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +G + ++D  V IK+  TG +E +S  +V+   
Sbjct: 385 LGDRDIADGTVGIKNLATGDQESVSSADVVARV 417


>gi|284054835|ref|ZP_06385045.1| threonyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 102

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 32/87 (36%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   E +  +   +      D   +++G     A+    P+  +VG+K V  + + 
Sbjct: 12  SDEFLPFVESVAEKWRSLDIRAEADHSHDRLGKMIRNAEKAKVPVMAVVGAKEVESNSLS 71

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSN 444
           I+ R  G    +++ E  +      +N
Sbjct: 72  IRTRALGELGTLTVAETQSRLQFALAN 98


>gi|189237111|ref|XP_971520.2| PREDICTED: similar to glycyl-tRNA synthetase [Tribolium castaneum]
          Length = 834

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/419 (12%), Positives = 124/419 (29%), Gaps = 76/419 (18%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R    +   LPF   QI   FR+E+ PR G++R REF M +   F
Sbjct: 396 FLRPETAQGIFVNFKRLLEFNQGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHF 455

Query: 164 DLTPEGSKHSYNKMFVS----YLRIFHRLGLKSIPMRA-----------ESGPIGGDLSH 208
               + +   ++ +  +    Y       G  +  +              +        H
Sbjct: 456 CDPADKNHPKFDSIRDTELLLYSACNQMDGKPAEKLTIGSAVDKGLVANATLGYFIARIH 515

Query: 209 EFIVLADTGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +F+V     E ++   +    +    +++    + ++    +E       +  D+     
Sbjct: 516 KFLVKCGVDEKRLRFRQHMANEMAHYAQDCWDAECLTSYGWIECVGCADRSAFDLTQHTQ 575

Query: 268 FDSL---PENKRVSARGIEV----------GHIFY----------FGTKYSLPMSATFKG 304
              +    E K    + ++V          G  F              + S   +     
Sbjct: 576 ATGVRLAAEKKLAEPKIVDVVEATPNKGVLGKTFKKDAKIITDALTQLQVSEVEALEKDL 635

Query: 305 ADGKDHY------------------------------VQMGSYGIGAMRVVAAVIESSHD 334
                H                                 +     G  R+  A+ E +  
Sbjct: 636 ESNGSHELTIDDKKFTLTKEMVTVKRYQKTLHVEEIIPSVIEPSFGVGRITYAIFEHNFK 695

Query: 335 GKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +      +      S+  +K      + +       +++   L+KV      DD    I
Sbjct: 696 MRENDEQRTYLSLPASIAPLKCSVLPLSSNAEFAPFVKQLSTALTKVDVSHKIDDSSGSI 755

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G ++A  D +  P  + +    + +   V ++ R +  +  + L+++         + +
Sbjct: 756 GRRYARTDEIAIPYGITIDFDTLKEPHSVTLRERDSMAQVRIPLDDIATVLHDLSYSKK 814


>gi|149243239|pdb|2PMF|A Chain A, The Crystal Structure Of A Human Glycyl-Trna Synthetase
           Mutant
          Length = 693

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/312 (11%), Positives = 83/312 (26%), Gaps = 24/312 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 350 TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 409

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 410 RSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICD 469

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +       
Sbjct: 470 ECYITEMEMLLNEKGEFTIETE-GKTFQLTKDMINVKRFQ-KTLYVEEVVPNVIEPSFRL 527

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      +++   L++ 
Sbjct: 528 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRH 587

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 588 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISE 647

Query: 434 VINYASHRFSNN 445
           + +      + N
Sbjct: 648 LPSIVQDLANGN 659



 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 91  SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 150

Query: 96  LADRNDK 102
                + 
Sbjct: 151 DVKNGEC 157


>gi|332184775|gb|AEE27029.1| Histidyl-tRNA synthetase [Francisella cf. novicida 3523]
          Length = 421

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/422 (13%), Positives = 124/422 (29%), Gaps = 32/422 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LPL       + + I+   +R    E  +P ++ ++L+  S     D   KE   
Sbjct: 9   GFNDILPLDSYKWQFLESKIKLILDRYNYSETRLPVVEKSELFHRSVGETSDIVSKETYD 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P        +   +  + R      +     FR E   +    R R+F
Sbjct: 69  FQDRNGDSLTLRPEGTAGCVRMVIENNLATRGQVQKLWYCGPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 ++             +  S  +       + + +   S     +       L +
Sbjct: 126 YQLGVEAYGFDGIAIDLEILAITWSLFKELGIS--EYVTLELNSLGSSLNRQEYTQALLE 183

Query: 216 T-----GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
                  E      K     P+   ++  +    + +   +          +  ++    
Sbjct: 184 YLKPYHAELDEDSIKRLDKNPLRILDSKIEKTQKILANAPKLIDFIDEDLRLRFKQTRQY 243

Query: 271 LP------ENKRVSARGIEV--GHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           L       +  +   RG++   G +F       G++ ++     +          +  + 
Sbjct: 244 LDALGVVYKINQNLVRGLDYYTGLVFEWTTDKLGSQSAICAGGRYDSLIENLGGQKTAAI 303

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G         ++                 F +    +           E I   L ++  
Sbjct: 304 GFAIGMERLLILLEDLGKLPNQDNACDVFFVLDSAQLYQS----LAIVENIRQELPQLKI 359

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVIN 436
           D   D       SQF  AD  G  + +I+G   + +    IK     G ++ ++ +E+IN
Sbjct: 360 D--MDLKFGSFKSQFKKADKSGAKVAIIIGQDELDNGFAGIKFLQQNGEQQQVAFDELIN 417

Query: 437 YA 438
           + 
Sbjct: 418 FL 419


>gi|298372789|ref|ZP_06982779.1| glycine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275693|gb|EFI17244.1| glycine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 516

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 83/253 (32%), Gaps = 16/253 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       GE   +    +  F +    +             +  A YA  
Sbjct: 260 FRMREFEQMEMQFFVRPGEEMKWF-DYWKHFRMRWHRSLGLGDGKYRFHDHEKLAHYANA 318

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     ++     E + + +R            KYS      F     + +   +    I
Sbjct: 319 ATDIEFEMPFGFKEVEGIHSRTDFDLSQHE---KYSGKNIKYFDPELNESYVPYVIETSI 375

Query: 320 GAMRVVAAVIESSHDGKGI---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R+  +++ +S++ + +           P  +AP K++++ +   D        ++  
Sbjct: 376 GVDRMFLSIMAASYEEQQLEGGDSRVVLHLPPVLAPNKVAVLPLVKKD-GLPQKAAEVMN 434

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L        +D+    IG ++   D +G P  V +  + + D  V I+HR +  +  + 
Sbjct: 435 MLK-FDFKTVYDEKD-SIGKRYRRQDAVGTPFCVTIDHQTLEDDTVTIRHRDSMEQSRVP 492

Query: 431 LEEVINYASHRFS 443
           +  +    +   S
Sbjct: 493 VGSLHGIVNDNVS 505


>gi|302541112|ref|ZP_07293454.1| histidine-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302458730|gb|EFL21823.1| histidine-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 420

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/414 (13%), Positives = 118/414 (28%), Gaps = 12/414 (2%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y  +P        V   I     R+G   +  P  ++ +L+        D   KEM  
Sbjct: 9   GTYDLIPPASATYLAVRDAIATPLRRSGYGYIETPGFENVELFARGVGESTDIVTKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           L  +    +   P     +             +LP   +     +R E   +    R R 
Sbjct: 69  LTTKGGDELALRPEGTASVLRAALEANLHKAGSLPVKLWYSGSYYRYERPQKG---RYRH 125

Query: 155 FLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLK--SIPMRAESGPIGGDLSHEFI 211
           F    A       P            +Y  +  R      +    AE  P+      +F+
Sbjct: 126 FSQVGAEAIGAEDPALDAELIILAHDAYRSLGLRNFRILLNSLGDAECRPVYRAALQDFL 185

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              D  E             +  +       ++   ++  +             +L  + 
Sbjct: 186 RGLDLDEDTRRRIDINPLRVLDDKRDAVQKQLAGAPLLRDYLCDGCREYHARVRELITAQ 245

Query: 272 P---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               E+     RG++      F   +    S +  G  G+   +     G     V  A+
Sbjct: 246 GVVFEDDVKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGPALPSVGWAL 305

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +     + +      +  R     +   L K G    +   G+ +
Sbjct: 306 GVDRTVLALEAEGVRLDLPDATSVFAVPLGEEARKVLFGLVGELRKEGVAADFAYGGKGL 365

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +    A+  G    ++ G + +++  V++K   +G +E + L +++     + 
Sbjct: 366 KAAMKAANRSGARYAIVAGERDLAEGVVQLKDMESGEQESVPLTKIVTTIQSKL 419


>gi|71892303|ref|YP_278037.1| histidyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|83305863|sp|Q492E1|SYH_BLOPB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|71796409|gb|AAZ41160.1| histidyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 438

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/423 (13%), Positives = 111/423 (26%), Gaps = 25/423 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G++ +LP        +  I+    +  G  E+  P ++  +L+  S G   D   KEM  
Sbjct: 13  GMHDYLPKDTILWQYIENILITILDSYGYKEIRFPIIEDTNLFKRSIGEVTDVIEKEMYN 72

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN   +   P            H   Y      +Y     FR E   +    +  +F
Sbjct: 73  FTDRNGNNLTLRPEGTSGCVRAGIKHGLFYHQEQRLWYL-GPMFRYERPQKGRYRQFHQF 131

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             +                  + +       H     +      S          F+   
Sbjct: 132 SAEAFGQIGPDIDAELILITARCWKKLGINHHLSLELNSIGSLSSRINYRKKLITFLEKN 191

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF------ 268
                     +     P+   +T       L       +      S VH  +L       
Sbjct: 192 -LSNLDSNALRRLYSNPLRILDTKNTKTKELLLNAPILSDYLDDDSRVHFSELCQLLNLL 250

Query: 269 -------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                    L        + +        G K ++     +     ++           +
Sbjct: 251 GVPYRVNPYLVRGLDYYNKTVFEWVTDSLGVKKTICAGGRY-DELVQELGGYSAPAIGFS 309

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           + +   ++         I   ++      +       +      E I + L  +   V  
Sbjct: 310 IGLERVILLIQEINNISILHKNIYIDVYFISIGDNSRKHAMLLSENIRSTLPSLRLMVHH 369

Query: 382 --DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD    I  QF  A+     + +I+  K   D  + +K+  +  +E +  + V     
Sbjct: 370 GGDD----IKKQFYCANKHKPQIVLIMNEKNALDKTIILKNLQSKTQEILKHDAVSERLK 425

Query: 440 HRF 442
           H  
Sbjct: 426 HIL 428


>gi|126640574|ref|YP_001083558.1| histidyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
          Length = 399

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/403 (10%), Positives = 106/403 (26%), Gaps = 23/403 (5%)

Query: 61  QNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            +  G  ++ +P ++   L+  +     D   KEM    D+ +         E     + 
Sbjct: 1   MDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMYTFFDKGNPPESLTLRPEGTAGCVR 60

Query: 119 RS-HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNK 176
                   R      + +   FR E   +    +  +F ++                  +
Sbjct: 61  ALVEHNLLRGATPRVWYMGPMFRYEKPQKGRYRQFHQFGVETFGVATPDIEAEVILMTAR 120

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
           ++             +     E      +    F+        +    +     P+   +
Sbjct: 121 LWKRMGVAHMVQLELNTLGEKEERTEYRNALVAFLNEHKDALDED-SQRRLTTNPLRILD 179

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-------------PENKRVSARGIE 283
           +  +    +     +        S  H ++L D L                     + + 
Sbjct: 180 SKIESTQKILENAPKLYDFLKEDSLSHFQQLQDYLTAAGIKFVINQKLVRGLDYYNKTVF 239

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                  G++ ++     + G  G+       S       +    +    +         
Sbjct: 240 EWTTTALGSQGTVCGGGRYDGLVGQLKGKADQSVPAVGFGMGMERLLLLIEQVEQAEIVR 299

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDDMGEQIGSQFAVADLLGFP 401
                +          +     E++  +L        +        + SQ   AD  G  
Sbjct: 300 DCEAFLVAEPAYQSKALV--LAEQLRDQLEAANSNIRIKT-GSQGSMKSQMKKADQAGAV 356

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             +I+G +     ++ IK   T  +  ++L E++ +   +F+ 
Sbjct: 357 YAIILGEREWEAQQLAIKELATAEQSQVALAELVPFLIEKFTK 399


>gi|19552859|ref|NP_600861.1| histidyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|62390530|ref|YP_225932.1| histidyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|32130116|sp|Q8NQ07|SYH_CORGL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|21324416|dbj|BAB99040.1| Histidyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|41325868|emb|CAF20031.1| HISTIDYL-TRNA SYNTHETASE [Corynebacterium glutamicum ATCC 13032]
          Length = 429

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/423 (13%), Positives = 127/423 (30%), Gaps = 31/423 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G+  + P    A   V      + ++ G   + +P  +   L+        D   KEM  
Sbjct: 19  GVPDYAPPKSAAFLAVRDAFVNQAHKAGFEHIELPIFEDTGLFARGVGESTDVVSKEMYT 78

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR ++++   P     +      H      LP         FR E RP+ G  R  + 
Sbjct: 79  FADRGERSVTLRPEGTAGVMRAVIEHSLDRGQLPVKLNYAGPFFRYE-RPQAGRYRQLQ- 136

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVL 213
            +         P            SY  +  +     +    +    P       +F+  
Sbjct: 137 QVGVEAIGVDDPALDAEIIALADRSYRSLGLQDFRLELTSLGDRHCRPEYRQKLQDFLFA 196

Query: 214 ADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
               E      ++   +   D     +    D  + L+ +  +    +   + + ++   
Sbjct: 197 LPLDEETRKRAEINPLRVLDDKRPEVQEMTADAPLMLDHLDAECREHFETVTGLLDDMGV 256

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGK--DHYVQMGSYGIGA 321
             +   + V          F       G +  +     + G   +     +    YG+G 
Sbjct: 257 PYVINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQDLSGIGYGLGV 316

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF- 380
            R + A+              +     +  + +    +        I   L   G     
Sbjct: 317 DRTMLALEAEGVTVG------AERRVDVYGVPLGKDAKKALA---GIVNTLRAAGISTDM 367

Query: 381 -WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            + D G + G+    AD       +++G + + ++ + +K      + D++L+EV+ +  
Sbjct: 368 SYGDRGLK-GAM-KGADRSNALYTLVLGEQELENNTIAVKDMRAHEQHDVALDEVVAFLQ 425

Query: 440 HRF 442
            + 
Sbjct: 426 GKL 428


>gi|284006775|emb|CBA72038.1| histidyl-tRNA synthetase [Arsenophonus nasoniae]
          Length = 425

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/416 (13%), Positives = 112/416 (26%), Gaps = 22/416 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP   +    +   +++        E+  P ++   L+  + G   D   KEM    DR+
Sbjct: 15  LPADIQFWQKIENKLKQILASYSFSEIRTPIVEQTALFSRAIGEVTDVVEKEMYSFDDRD 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRSREFLM 157
             ++   P +          H   Y      +Y     + +   + R R       E   
Sbjct: 75  GDSITLRPENTAGCVRAGIEHGLLYNQQQRLWYLGPMFRYERPQKGRYRQFHQLGAEVFG 134

Query: 158 KDAYSFDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                 D         + +            + +G  +   +     +     +E  +  
Sbjct: 135 LAGPDIDAELIIMTARWWRELGIAKHVSLELNSIGSLAARAKYRQALVTFLQQYEDKLDE 194

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA--PYAATSDVHNE----KLF 268
           D            +D   P      +D   L   ++  +          +       ++ 
Sbjct: 195 DCRRRLSTNPLRILDSKNPDVQKLLNDAPLLADYLDDDSKQHFIGLCKLLDTAGVQYRIN 254

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVA 326
             L        R +        G + ++     + G              + +G  R+V 
Sbjct: 255 QRLVRGLDYYNRTVFEWVTDALGAQGTICAGGRYDGLVEQLGGKATSAVGFAMGMERMVL 314

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            V + + D         V           A  Q      EKI  +L  +         G 
Sbjct: 315 LVRQINPDFVAECTLVDVYLVACGE----ASQQAILVLAEKIRDQLPALKLMTHH--GGG 368

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               Q A A+     + +I+G       +V IK   TG +E +S + +        
Sbjct: 369 NFKKQLARANKYQAKIALILGEDEYQSGEVTIKDLRTGEQEKLSQQNIAVRLVELL 424


>gi|301154679|emb|CBW14142.1| histidyl tRNA synthetase [Haemophilus parainfluenzae T3T1]
          Length = 423

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/412 (14%), Positives = 117/412 (28%), Gaps = 27/412 (6%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               +   +R+  +  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEGQVRQILSSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYS 162
            P            H   Y N    +Y +   FR E       R       E        
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWY-MGPMFRHERPQKGRYRQFHQAGVEVFGIATPE 138

Query: 163 FDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            D           K            + +G         S  +    +H+ ++  +  E 
Sbjct: 139 IDAELIILTARLWKALGIDQHVSLQLNSIGSLEARANYRSALVAFLENHQDLMSEEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVS 278
            V      +D    +     D    L   ++  +   +A    + +          K V 
Sbjct: 199 LVKNPLRILDTKNQALQDVLDGAPKLLDYLDDESREHFAQLCGLLDAVGIQYEINPKLVR 258

Query: 279 ARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                   +F       G + ++     + G   +       S G         ++    
Sbjct: 259 GLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATSSVGFAMGLERLVLLV--- 315

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGSQ 391
                    S+       I +    +    A  ++  +L              G     Q
Sbjct: 316 ----QEVNKSIPVKSAVDIYVVYQGEGTTLAAFQLAEKLRSELPHLSTMLHCSGGNFKKQ 371

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHRF 442
           F  AD  G  L +++G   V +++V +KH      ++ + +  +I +   +F
Sbjct: 372 FKRADKSGATLALVLGESEVQNNQVVVKHLLGAAEQQTIDVANLIEHVKAQF 423


>gi|237785608|ref|YP_002906313.1| histidyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
 gi|259511941|sp|C4LIW5|SYH_CORK4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|237758520|gb|ACR17770.1| Histidyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 426

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/422 (11%), Positives = 108/422 (25%), Gaps = 27/422 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+  ++P      + V +         G   + +P  +   L+        D   KEM  
Sbjct: 15  GVPDYVPPNSHEFNAVRSTFHHCATVAGYEPVELPIFEDTSLFARGVGESSDVVTKEMYT 74

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  ++M   P     +      H      LP         FR E        R R+F
Sbjct: 75  FEDRGGRSMTLRPEGTAGVMRAVIEHGLDRGQLPAKLVYAGPCFRYERPQAG---RYRQF 131

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +  +           +          +G +                 +      
Sbjct: 132 QQVGVEAIGVDDPALDAEVIALAYRCFTSLGLMGFRLELTSLGDSTCRPAYREKLQAFLT 191

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
           +              P+   +    ++  + +         +  +  H E +   L +  
Sbjct: 192 SLPLDEETQHRAQINPLRVLDDKRPEVKEMTADAPLMLDYLSDEARAHFETVTGILDD-- 249

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD-----HYVQMGSYGIGAMRVVAAVIE 330
                 I    +      Y+           G            G       R ++ V  
Sbjct: 250 LSVPYTINPRMVRGL-DYYTKTCFEFVHDDLGAQSGIGGGGRYDGLMAELGGRDLSGVGF 308

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK----IYARLSKVGCDVFWDDMGE 386
                + ++  ++          ++ +     +   +    I   L + G          
Sbjct: 309 GLGVERALLALETEKKTVTDGSRVEVYGVAMGEEAHRRMPVIINDLRQSGVRA-----DM 363

Query: 387 QIGSQ-----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             G +        AD  G    +++G   ++ S V++K    G +  + L++V+     R
Sbjct: 364 SYGHRGLKGSMKAADRAGARFALVIGEDELAKSIVQVKDLHEGEQTAVPLDQVVQEVRGR 423

Query: 442 FS 443
            S
Sbjct: 424 LS 425


>gi|29376493|ref|NP_815647.1| histidyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227519313|ref|ZP_03949362.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|227555480|ref|ZP_03985527.1| histidyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|257416407|ref|ZP_05593401.1| histidyl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|39932157|sp|Q833I1|SYH_ENTFA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|29343957|gb|AAO81717.1| histidyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227073242|gb|EEI11205.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|227175390|gb|EEI56362.1| histidyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|257158235|gb|EEU88195.1| histidyl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
 gi|315147634|gb|EFT91650.1| histidyl-tRNA synthetase [Enterococcus faecalis TX4244]
 gi|315574558|gb|EFU86749.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315581800|gb|EFU93991.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0309A]
          Length = 433

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 108/396 (27%), Gaps = 11/396 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDIVSKEMYDFYDKGDRHVTLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  +         P+  Y +   FR E      + +  +  ++   S + 
Sbjct: 80  PEGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYERPQAGRLRQFHQIGVEAFGSENP 139

Query: 166 ------TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                                   + + LG K          I     H   +  D+   
Sbjct: 140 ALDVEIMAMALDFFKQLGIQQIKLVINSLGDKETRATYRQALIDYLEPHMAELSEDSQRR 199

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                   +D     +     +  S+ + + E   A + A +D+ +        ++  V 
Sbjct: 200 LHENPLRVLDSKDKKDKVIVAEAPSILDYLNEPSKAHFEAVTDMLDLLEIPYEIDSNMVR 259

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                   IF   ++     + +   A G+ + +     G         +          
Sbjct: 260 GLDYYTHTIFEIMSEAPKMGAQSTICAGGRYNGLVEELGGPDTPGFGFGMGIERVLLTME 319

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +         +         A  ++   +   G     D M  +  +QF  AD L
Sbjct: 320 AEEVVIPALSELDAYVVGIGSDTNVAALQLVQSIRNFGFSADRDYMNRKPKAQFKTADKL 379

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              L + +G   +++  V +K   T   +   L  +
Sbjct: 380 QAKLVLTIGENELNEGIVNVKSMATREEKAFPLSAI 415


>gi|255031032|ref|ZP_05302983.1| threonyl-tRNA synthetase [Listeria monocytogenes LO28]
          Length = 160

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 7   FLPILQENP-RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           F+ + +E   RD      +L L T  I +  +G+  WLP G      +   I +++ R G
Sbjct: 95  FIQMQKEAKERDHRKLGKELELFTNSI-EVGQGLPLWLPKGATIRRVIERYIVDKEERLG 153

Query: 66  AIEMSVP 72
              +  P
Sbjct: 154 YNHVYTP 160


>gi|227534982|ref|ZP_03965031.1| histidyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187373|gb|EEI67440.1| histidyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 427

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 63/403 (15%), Positives = 113/403 (28%), Gaps = 24/403 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V A+ R+   +    E+  P  ++ D++  S     D   KEM    D+ D+ +   
Sbjct: 20  WQQVEAVARKIFAQYQYHEIRTPIFENVDVFSRSAGDTSDIVTKEMYTFKDKGDRMIALR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P+  Y +   FR E        R R+F      +F  
Sbjct: 80  PEGTAGVVRAYVENKLYGPEHAKPYKVYYLGPMFRYERPQSG---RQRQFHQIGVEAFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
                      +    L       LK +       P      H  +V   T         
Sbjct: 137 DSPVLDAETLALAKQLLEALSAKHLKFVINSLGD-PATRKAFHAALVDYLTPFKDQLSED 195

Query: 226 DFMDFPIPSENT------DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKR 276
             +                  +I++    +  +  P A       + L   L    E   
Sbjct: 196 SKVRLVKNPLRILDSKDKHDQEIVANAPSILDYLTPEAQQHFDRVKTLLQGLGIPFEVDA 255

Query: 277 VSARGIEV--GHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
              RG++     IF             T   A G+ + +     G     +  A+     
Sbjct: 256 TMVRGLDYYNHTIFEVMSDDKVFGGGYTTILAGGRYNGLVEELGGPETPGIGFAMGVERL 315

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                               I   DQ       ++   + + G     D MG +   QF 
Sbjct: 316 MLLMQGELP----TAQPDAYIVTIDQGADQEALQMLTAIRQQGFTGEMDYMGRKPKGQFK 371

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            A+     L + +G    +   V+IK+  TG ++     +V+ 
Sbjct: 372 AANKANAKLVLTIGESERAAGTVQIKNMATGDQQAFPQADVLA 414


>gi|308805150|ref|XP_003079887.1| multifunctional aminoacyl-tRNA ligase-like protein (ISS)
           [Ostreococcus tauri]
 gi|116058344|emb|CAL53533.1| multifunctional aminoacyl-tRNA ligase-like protein (ISS)
           [Ostreococcus tauri]
          Length = 589

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/366 (13%), Positives = 92/366 (25%), Gaps = 80/366 (21%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + +     +E           P   SA  L  E    + +  E+  
Sbjct: 281 SGCYILKPWAYAQWEVLKEFFDKEIKALDVENCYFPMFVSASRLEKEKDHIEDFAPEVAW 340

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +  +       PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 341 VTRSGETDLEVPIAVRPTSETVMYPHYAQWIRSHRDLPLRLNQWCNVVRWEFKHPTPFIR 400

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
           SREFL ++ ++   T E       ++   Y                        +  E++
Sbjct: 401 SREFLWQEGHTAYATKEECDVEVFQILDLY----------------------RRVYEEYL 438

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                                         +    S  E++      T+    E      
Sbjct: 439 A--------------------------VPVVPGKKSEKEKFAGGLYTTT---VEAYVPGS 469

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                     ++       G  +S   +  F+   G        S+G    R +      
Sbjct: 470 GRG-------VQGATSHCLGQNFSKMFNIEFEDTKGGKSLAWQNSWGF-TTRTLGVCYMV 521

Query: 332 SHDG------------KGIIWPDSVAPFKISLINIKAHDQV----CRDACEKIYARLSKV 375
             D             + I W       +     +  +  V      +  + +   L   
Sbjct: 522 HGDDDGLVLPPKVAPIQAIHWRLYQYLVETFGSWLSYNGLVSTFMFLNIADGMTKALKAA 581

Query: 376 GCDVFW 381
           G     
Sbjct: 582 GVRSKL 587


>gi|229545446|ref|ZP_04434171.1| histidyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|256619445|ref|ZP_05476291.1| histidyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256853486|ref|ZP_05558856.1| histidyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|307275910|ref|ZP_07557043.1| histidyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|307295913|ref|ZP_07575745.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|229309362|gb|EEN75349.1| histidyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|256598972|gb|EEU18148.1| histidyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256711945|gb|EEU26983.1| histidyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|306496244|gb|EFM65823.1| histidyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|306507240|gb|EFM76377.1| histidyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|315028897|gb|EFT40829.1| histidyl-tRNA synthetase [Enterococcus faecalis TX4000]
          Length = 433

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/396 (12%), Positives = 107/396 (27%), Gaps = 11/396 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDIVSKEMYDFYDKGDRHVTLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  +         P+  Y +   FR E      + +  +  ++   S + 
Sbjct: 80  PEGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYERPQAGRLRQFHQIGVEAFGSENP 139

Query: 166 ------TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                                   + + LG K          I     H   +  D+   
Sbjct: 140 ALDVEIMAMALDFFKQLGIQQIKLVINSLGDKETRATYRQALIDYLEPHMAELSEDSQRR 199

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                   +D     +     +  S+ + + E   A + A +D+ +        ++  V 
Sbjct: 200 LHENPLRVLDSKDKKDKVIVAEAPSILDYLNEPSKAHFEAVTDMLDLLEIPYEIDSNMVR 259

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                   IF   ++     + +   A G+ + +     G         +          
Sbjct: 260 GLDYYTHTIFEIMSEAPKMGAQSTICAGGRYNGLVEELGGPDTPGFGFGMGIERVLLTME 319

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +         +            ++   +   G     D M  +  +QF  AD L
Sbjct: 320 AEEVVIPALSELDAYVVGIGSETNITALQLVQSIRNFGFSADRDYMNRKPKAQFKTADKL 379

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              L + +G   +++  V +K   T   +   L  +
Sbjct: 380 QAKLVLTIGENELNEGIVNVKSMATREEKAFPLSAI 415


>gi|260205901|ref|ZP_05773392.1| histidyl-tRNA synthetase [Mycobacterium tuberculosis K85]
 gi|289575288|ref|ZP_06455515.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis K85]
 gi|289539719|gb|EFD44297.1| histidyl-tRNA synthetase hisS [Mycobacterium tuberculosis K85]
          Length = 423

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 61/392 (15%), Positives = 111/392 (28%), Gaps = 15/392 (3%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            + G   + +P  +   L+        D   KEM   ADR D+++   P     +     
Sbjct: 36  RQAGYSHIELPIFEDTALFARGVGESTDVVSKEMYTFADRGDRSVTLRPEGTAGVVRAVI 95

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            H      LP         FR E RP+ G  R  +  +         P            
Sbjct: 96  EHGLDRGALPVKLCYAGPFFRYE-RPQAGRYRQLQ-QVGVEAIGVDDPALDAEVIAIADA 153

Query: 180 SYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQV----FCSKDFMDFPIP 233
            +  +        I    +    P   +L  EF+   D  E             +D   P
Sbjct: 154 GFRSLGLDGFRLEITSLGDESCRPQYRELLQEFLFGLDLDEDTRRRAGINPLRVLDDKRP 213

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                      L   +      +  T   H + L      N R+  RG++      F   
Sbjct: 214 ELRAMTASAPVLLDHLSDVAKQHFDTVLAHLDALGVPYVINPRM-VRGLDYYTKTAFEFV 272

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +    + +  G  G+   +     G     +   +              +        + 
Sbjct: 273 HDGLGAQSGIGGGGRYDGLMHQLGGQDLSGIGFGLGVDRTVLALRAEGKTAGDSARCDVF 332

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                +  +     +  RL   G  V   + D G + G+    A   G  + ++ G + +
Sbjct: 333 GVPLGEAAKLRLAVLAGRLRAAGVRVDLAYGDRGLK-GAM-RAAARSGARVALVAGDRDI 390

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               V +K   TG +  +S + V+     R +
Sbjct: 391 EAGTVAVKDLTTGEQVSVSTDSVVAEVISRLA 422


>gi|193786641|dbj|BAG51964.1| unnamed protein product [Homo sapiens]
          Length = 739

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 83/312 (26%), Gaps = 24/312 (7%)

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            +   +   +    +K   +   + + +              ++         E +  AD
Sbjct: 404 TVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCAD 463

Query: 216 TGETQVFCSKDFMDFPIPSENTDFD--------------DIISLNSIVEQWTAPYAATSD 261
                + C       P+ +E    +               I        +    Y A  D
Sbjct: 464 RSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICD 523

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                  + L   K       E G  F              K    ++    +     G 
Sbjct: 524 ECYITEMEMLLNEKGEFTIETE-GKTFQLTKDMINVKRFQ-KTLYVEEVVPNVIEPSFGL 581

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKV 375
            R++  V E +   +      +   F   +   K      + +Q      ++    L++ 
Sbjct: 582 GRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKESSEALTRH 641

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEE 433
           G     DD    IG ++A  D +G    V +    V+       ++ R +  +    + E
Sbjct: 642 GVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISE 701

Query: 434 VINYASHRFSNN 445
           + +      + N
Sbjct: 702 LPSIVQDLANGN 713



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 145 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 204

Query: 96  LADRNDK 102
                + 
Sbjct: 205 GVKNGEC 211


>gi|75908477|ref|YP_322773.1| histidyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
 gi|123731501|sp|Q3MAV8|SYH_ANAVT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|75702202|gb|ABA21878.1| histidyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
          Length = 462

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 62/450 (13%), Positives = 128/450 (28%), Gaps = 45/450 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR----------- 85
            G   +LP  ++    +   IR      G   +  P ++  ++    G            
Sbjct: 13  SGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGIDP 72

Query: 86  -YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL- 143
                 +     +             + V    + +   +    PF  YQ+ + FR E  
Sbjct: 73  ILPPNRQAEKDKSGETGSEARALKFDQTVPLAAYIARHLNELTFPFARYQMDVVFRGERA 132

Query: 144 -RPRFGVMRSREFLM-----KDAYSFDLTPEGSKHSYNKMF--VSYLRIFHRLGLKSIPM 195
              RF   R  +  +              P      +  +      +RI +R  L     
Sbjct: 133 KDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVHIGDFLIRINNRKVLTGFFQ 192

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV------ 249
             +            I   +         +   +   P +     D I ++  V      
Sbjct: 193 SLDISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFIKIDGSVDDVLDK 252

Query: 250 -----------EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL-- 296
                      EQ+    +    V        +P+ +      I  G  +Y GT Y    
Sbjct: 253 LKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTL 312

Query: 297 --PMSATFKGADGKDHYVQMGSYGIGAMR--VVAAVIESSHDGKGIIWPDSVAPFKISLI 352
               +     + G+   +     G       +   +             +++ P    ++
Sbjct: 313 IGHEALGSICSGGRYEELVGTFIGEKMPGVGISIGLTRLISRLLKAGILNTLPPTPAQVV 372

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            +   D +      K+  +L + G +V  +    Q+G QF  AD  G    VI+G+   +
Sbjct: 373 VVNMQDNLMPTY-LKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIQFCVIIGADEAA 431

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             K  +K   +G + +++L ++      R 
Sbjct: 432 AQKSSLKDLKSGEQVEVALADLPEEVKRRL 461


>gi|51244423|ref|YP_064307.1| histidyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
 gi|81692950|sp|Q6AQS3|SYH_DESPS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|50875460|emb|CAG35300.1| probable histidyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
          Length = 429

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 67/406 (16%), Positives = 117/406 (28%), Gaps = 21/406 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP   +    V  I R+   R    E+ +P L+  DL+  S     D   KEM  
Sbjct: 19  GFKDILPGEVELWQQVEKITRDIFTRHNFSEIRMPILEQTDLFARSIGEATDIVEKEMYT 78

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+    +   P     +   +  +           + I   FR E   +    R R+F
Sbjct: 79  FVDKK---VTMRPEATASLIRAYIENGLYVAKPVQRLFTIGPMFRHERPQKG---RLRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEF--- 210
              D                 M     R         +         P+      EF   
Sbjct: 133 HQMDIEVLGSVNPLVDAELMAMGSMVFRTLGINVRLEMNSLGCPECRPVYRQALVEFIED 192

Query: 211 ---IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
               +  D            +D          ++  S+   +    A +  T     E L
Sbjct: 193 RFEHLCDDCKRRSKTNPLRVLDCKNAGCRAQVEEAPSILDYLCGDCADHFDTVCTTLESL 252

Query: 268 FDSLPENKRVSARGIE--VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                 NK    RG++      F F T      SA   GA G+   +     G   M  +
Sbjct: 253 EIPYSLNK-FMVRGLDYYCRTTFEFITDDLGAQSA--VGAGGRYDGLVEKLGGPVGMPGI 309

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
              I        +   ++    +   + +             +   L  +G  V  D  G
Sbjct: 310 GFAIGMERLILLLQQKETEFVAEKLDLFVIGLGDAATKLACILSQDLRGLGVGVAVDYEG 369

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             + +Q  +A+  G    +I+G   +   K  +K+  +  + +++L
Sbjct: 370 RSLKAQMKLANKAGVAATLILGENEIETGKAVLKNMDSQEQCEVAL 415


>gi|255322190|ref|ZP_05363336.1| histidyl-tRNA synthetase [Campylobacter showae RM3277]
 gi|255300563|gb|EET79834.1| histidyl-tRNA synthetase [Campylobacter showae RM3277]
          Length = 415

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 66/418 (15%), Positives = 113/418 (27%), Gaps = 22/418 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP      + +  I  E     G   +  P L+   L+  S     D  GKEM +
Sbjct: 7   GMKDVLPPQSGLYERIIKICEEVAKNYGYEFVLAPHLEQTALFRRSVGESSDIVGKEMYQ 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+    +   P     +   F             ++     FR E   +    R REF
Sbjct: 67  FEDKGGNDVCLRPEGTAGVVRAFIEAKFDRAGGVRRYFYHGSMFRYERPQKG---RLREF 123

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRI--FHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
                  F         S   M              L +    A S     +   +F+  
Sbjct: 124 HQFGCECFGEPSVYEDASVILMINEIFSRLGIKTKLLINSLGDAASMGTYREKLVKFLDE 183

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-- 271
            + G+    C +  +  PI   +   +    +                   +KL + L  
Sbjct: 184 HE-GQICEDCKRRKLTNPIRVLDCKVESCQKIYENAPLIIGSLNDECAGEFKKLQEILSG 242

Query: 272 ------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                  + K V          F F +      SA   G         +G          
Sbjct: 243 NGVEFEIDPKLVRGLDYYCKTAFEFVSNEIGAQSAVAGGGRYDRLVEYLGGKAS-----Y 297

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
                   +    I     +  K + + I A D    DA  KI   L K    V      
Sbjct: 298 GVGFAMGIERIMEILGGRESESKRNGVYIGAMDADGVDAVYKIAINLRK-NLPVLVSYEP 356

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +++      AD     + + VG   +   K+ +K       + + L ++ +      +
Sbjct: 357 KKLQKHLNAADNANARVCLCVGEDELKSGKIWLKDLSEKAEKTIDLADLESELKRILN 414


>gi|307326771|ref|ZP_07605963.1| histidyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306887534|gb|EFN18528.1| histidyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 420

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 61/417 (14%), Positives = 118/417 (28%), Gaps = 16/417 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y  +P    A   V   I     R+G   +  P  ++ +L+        D   KEM  
Sbjct: 9   GTYDLIPPASAAYLAVREAIAAPLKRSGYGYIETPGFENVELFARGVGESTDIVTKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           L  +    +   P     +             +LP   +     +R E   +    R R 
Sbjct: 69  LTTKGGDELALRPEGTASVLRAALEANLHKAGSLPVKLWYSGSYYRYERPQKG---RYRH 125

Query: 155 FLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLK--SIPMRAESGPIGGDLSHEFI 211
           F    A       P            +Y  +  R      +    A   P+      +F+
Sbjct: 126 FSQVGAEAIGAEDPALDAELIILAHDAYRSLGLRDFRILLNSLGDATCRPVYRAALQDFL 185

Query: 212 VLADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
              D  E      ++   +   D             +  + + E+  A +A   ++   +
Sbjct: 186 RGLDLDEDTRARVEINPLRVLDDKREAVREQLTGAPLLRDYLCEECKAYHAEVRELITAR 245

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                 + K V          F F        SA   G  G+   +     G     V  
Sbjct: 246 GVAFEDDAKLVRGLDYYTRTTFEFVHDGLGSQSA--VGGGGRYDGLSEMIGGPALPSVGW 303

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A+               +       +      +  R     +   L   G    +   G+
Sbjct: 304 ALGVDRTVLALEAEGIELNLPDAVSVFAVPLGEEARKVLFGVVGELRTAGVATDFAYGGK 363

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            + +    A+  G    ++ G + +++  V++K   +G +  + L EV+     R +
Sbjct: 364 GLKAAMKAANRSGARYAIVAGERDLAEDVVQLKDMESGEQAPVPLAEVVEAIQSRLA 420


>gi|257064756|ref|YP_003144428.1| histidyl-tRNA synthetase [Slackia heliotrinireducens DSM 20476]
 gi|256792409|gb|ACV23079.1| histidyl-tRNA synthetase [Slackia heliotrinireducens DSM 20476]
          Length = 464

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/435 (13%), Positives = 120/435 (27%), Gaps = 37/435 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--------------- 82
           G    LP   +      +   +  +  G   +  P  +  +++                 
Sbjct: 8   GTADLLPASARLWQRAVSTATKLFSSYGYEPIETPLFELTEVFTRGIGEATDVVNKEMFV 67

Query: 83  --SGRYDSYGKEMLRLAD---RNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQ 136
             SG  ++Y + +    D   ++ + +   P            H      + P   +   
Sbjct: 68  VRSG--ENYKRALAAGNDDGLKSKQRLALRPEGTAGTVRAVVQHNLVEQGSAPAKLFYYG 125

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPM 195
             FR E   +    R REF    A     T   +       +   Y ++        + +
Sbjct: 126 PMFRAERPQKG---RLREFHQIGAECLGSTEPSADAEMIIMLMRFYEKMGVPRSDMRLLI 182

Query: 196 RAESGPIGGDLSHEF---IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
            +           E     +L    E    C +     P+ + +   D    +       
Sbjct: 183 NSMGDDECRPAYREMVRRHILDHADEMCEDCQRRAETNPLRAFDCKKDACKHVMESAPII 242

Query: 253 TAPYAATSDVHNEKLFDSLPE------NKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
           T         H E +   L              RG++      F  + +   +A      
Sbjct: 243 TDHLCDDCRSHYEAVKKHLDAAGIEYIEDPTLVRGLDYYTRTVFEIQSTAIDAAQSAIGG 302

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF-KISLINIKAHDQVCRDAC 365
           G  +     + G      +   +        +    ++    +     I   +   R A 
Sbjct: 303 GGRYDKLAETVGGRPTPGLGFALGFERMVLALEAAGALGNTGRRIDGYIACVNDSVRGAA 362

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
            ++       G  V  D  G+ + +QF +AD LG    VI+G   +++ K  ++   T  
Sbjct: 363 FELLCAARDAGLTVDMDHQGKSLKAQFKIADRLGASTVVILGPDELAEGKARVRDMGTHA 422

Query: 426 REDMSLEEVINYASH 440
              + L+ V      
Sbjct: 423 ESLVDLDSVKKILLQ 437


>gi|78187640|ref|YP_375683.1| histidyl-tRNA synthetase [Chlorobium luteolum DSM 273]
 gi|123743606|sp|Q3B1Z1|SYH_PELLD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|78167542|gb|ABB24640.1| histidyl-tRNA synthetase [Chlorobium luteolum DSM 273]
          Length = 430

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/409 (11%), Positives = 109/409 (26%), Gaps = 26/409 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRL-ADRNDKAMIY 106
             +V  ++    +  G  E+  P  +  +L+        D  GKEM     D   +++  
Sbjct: 21  WKHVEEVVHTLASLYGFSEVRTPVFEYTELFQRGIGATTDIVGKEMFTFLPDPGGRSLTL 80

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +           +      Y I   FR E        +  +F  +        
Sbjct: 81  RPEMTAGVMRAALQRNLLSQAPVHKLYYISELFRKERPQAGRQRQFSQFGAELLGVSSPA 140

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD------TGETQ 220
                 ++       L +       +     E      +    +    +      + E  
Sbjct: 141 AVAEVLTFMMQVFETLGLSGLRLRINTLGDLEDRARYREALRSYFQPYEGELDESSKERL 200

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVHNEKLFDSLPENKRVSA 279
                  +D   P+          L   V+      + A      ++  D   ++  V  
Sbjct: 201 EKNPLRILDSKNPALRDMITGAPRLFDFVKAEGVREFEAVLRFLADRGIDYDVDHLLVRG 260

Query: 280 RGIEVGHIFY-----FGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   F       G + ++     + G     G    +    + +G  R++ A+ + 
Sbjct: 261 LDYYCHTAFEVQSTALGAQDAIGGGGRYDGLAKELGGGKEMPAVGFAVGMERLLIAMEKQ 320

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                       V                  D   ++  +L + G     D     + +Q
Sbjct: 321 GLFATLNPHGPLVYVVVQQ--------SELADHGMQVAFKLRRSGISTEIDLAARSMKAQ 372

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              A+ +     + VG   +   +  +K+ +T  +  + L+ +I     
Sbjct: 373 MREANRIRSGYALFVGQSELESGQYALKNLVTSEQTTLELQAIIEILRE 421


>gi|26553740|ref|NP_757674.1| histidyl-tRNA synthetase [Mycoplasma penetrans HF-2]
 gi|32130109|sp|Q8EWB8|SYH_MYCPE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|26453747|dbj|BAC44078.1| histidyl-tRNA synthetase [Mycoplasma penetrans HF-2]
          Length = 426

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/418 (12%), Positives = 122/418 (29%), Gaps = 30/418 (7%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLRLADRNDKAMIY 106
             + +N +++   N     E+  P  +  +L++       D   KE     D++D+ +  
Sbjct: 19  VFNKINDVLKTISNTYNCHEIKTPIFEHKELYIRNIGESSDIVTKEFYDFKDKSDRELAL 78

Query: 107 GPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
            P +   +      +   Y    P  FY +   FR E        +  +F     +    
Sbjct: 79  RPENTVGVIRSVVENKLLYTNPFPLKFYYLGPMFRYERPQSGRNRQFYQF--GIEFIGVK 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
                            ++           + +   IG   + E  + +       +  +
Sbjct: 137 NILNEIEGILFALDILKKLNITNW------KLKVNYIGSIETREKWINSLKKYFNKYKDE 190

Query: 226 DFMDFPIPSENTDFD-----------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
              D     E                 + S   I E  T      SD   + L   + E 
Sbjct: 191 LSEDSKNRIEKNPLRILDDKVDGSKSFVKSCPKIEEFLTKEEKEESDNFIKCLKTIVNEF 250

Query: 275 K--RVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           +      RG++   G +F   ++ +     +     G+   +         +    A+  
Sbjct: 251 EFDSTLVRGLDYYSGPVFEIVSQSNKLTGQSTIIGGGRYTKLTKELGDNDYICFGFALGM 310

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW--DDMGEQI 388
                        ++   + +                   +L  +   V    D   ++I
Sbjct: 311 ERLMLAYRDENQFLSNNSVDVYIASIGSVESELVAMNFANQLRNLNYRVEVNFDL--KKI 368

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             QF  ++     + +I G +   + +V +K++ T   + + L E+ N     F +++
Sbjct: 369 DKQFKNSNKYNPKIILIYGDEDHKNKQVTLKNQKTLENKVIKLNELNNKIKEFFESDK 426


>gi|56707231|ref|YP_169127.1| histidyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110669701|ref|YP_666258.1| histidyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134301266|ref|YP_001121234.1| histidyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|224456292|ref|ZP_03664765.1| histidyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254369916|ref|ZP_04985924.1| histidyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874070|ref|ZP_05246780.1| histidyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|81677144|sp|Q5NIL5|SYH_FRATT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123169691|sp|Q14K18|SYH_FRAT1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166227969|sp|A4IW12|SYH_FRATW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|54113637|gb|AAV29452.1| NT02FT1760 [synthetic construct]
 gi|56603723|emb|CAG44685.1| Histidyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320034|emb|CAL08068.1| Histidyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134049043|gb|ABO46114.1| histidyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151568162|gb|EDN33816.1| histidyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840069|gb|EET18505.1| histidyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158339|gb|ADA77730.1| histidyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 421

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 61/418 (14%), Positives = 123/418 (29%), Gaps = 34/418 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LPL       + + ++   +R    E  +P ++ ++L+  S     D   KE     DRN
Sbjct: 14  LPLDSYKWQLLESKVKLILDRYNYSETRLPIVERSELFHRSVGESSDIVSKETYDFQDRN 73

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P        +   +  + R      +     FR E   +    R R+F     
Sbjct: 74  GDSLTLRPEGTAGCVRMVIENNLATRGQTQKLWYCGPMFRYERPQKG---RYRQFYQLGV 130

Query: 161 YSFDLT-----------------PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            ++                      G          S     +R       ++    P  
Sbjct: 131 EAYGFDGIAIDLEVIAIAWSLFKELGIYEYVTLELNSLGSSLNRQEYTQALLQY-LKPYH 189

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            +L  + I   D    ++  SK      I +      D I  +  +          +   
Sbjct: 190 AELDEDSIKRLDKNPLRILDSKIEKTQKILANAPKLIDFIDHDLRLRFKQTCQYLDALGV 249

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGA 321
             KL ++L          +        G++ ++     + G   +          + IG 
Sbjct: 250 RYKLNENLVRGLDYYTGLVFEWTTDKLGSQSAICAGGRYDGLVENLGGQKTAAIGFAIGM 309

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++  + +           D       + ++            E I   L ++  D   
Sbjct: 310 ERLLLLLEDLGKLPNQDNACDVFFILDSAQLH------QSLAIVENIRQELPQLKID--M 361

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYA 438
           D       SQF  AD  G  + +I+G   + +    IK       ++ ++  E+IN+ 
Sbjct: 362 DLKFGSFKSQFKKADKSGAKVAIIIGQDELDNGFAGIKFLQQNEEQQQVAFNELINFL 419


>gi|270007232|gb|EFA03680.1| hypothetical protein TcasGA2_TC013782 [Tribolium castaneum]
          Length = 819

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/419 (12%), Positives = 124/419 (29%), Gaps = 76/419 (18%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R    +   LPF   QI   FR+E+ PR G++R REF M +   F
Sbjct: 381 FLRPETAQGIFVNFKRLLEFNQGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHF 440

Query: 164 DLTPEGSKHSYNKMFVS----YLRIFHRLGLKSIPMRA-----------ESGPIGGDLSH 208
               + +   ++ +  +    Y       G  +  +              +        H
Sbjct: 441 CDPADKNHPKFDSIRDTELLLYSACNQMDGKPAEKLTIGSAVDKGLVANATLGYFIARIH 500

Query: 209 EFIVLADTGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +F+V     E ++   +    +    +++    + ++    +E       +  D+     
Sbjct: 501 KFLVKCGVDEKRLRFRQHMANEMAHYAQDCWDAECLTSYGWIECVGCADRSAFDLTQHTQ 560

Query: 268 FDSL---PENKRVSARGIEV----------GHIFY----------FGTKYSLPMSATFKG 304
              +    E K    + ++V          G  F              + S   +     
Sbjct: 561 ATGVRLAAEKKLAEPKIVDVVEATPNKGVLGKTFKKDAKIITDALTQLQVSEVEALEKDL 620

Query: 305 ADGKDHY------------------------------VQMGSYGIGAMRVVAAVIESSHD 334
                H                                 +     G  R+  A+ E +  
Sbjct: 621 ESNGSHELTIDDKKFTLTKEMVTVKRYQKTLHVEEIIPSVIEPSFGVGRITYAIFEHNFK 680

Query: 335 GKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +      +      S+  +K      + +       +++   L+KV      DD    I
Sbjct: 681 MRENDEQRTYLSLPASIAPLKCSVLPLSSNAEFAPFVKQLSTALTKVDVSHKIDDSSGSI 740

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G ++A  D +  P  + +    + +   V ++ R +  +  + L+++         + +
Sbjct: 741 GRRYARTDEIAIPYGITIDFDTLKEPHSVTLRERDSMAQVRIPLDDIATVLHDLSYSKK 799


>gi|167836396|ref|ZP_02463279.1| histidyl-tRNA synthetase [Burkholderia thailandensis MSMB43]
          Length = 446

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 61/426 (14%), Positives = 113/426 (26%), Gaps = 29/426 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A ++      G   +  P ++   L+    G   D   KEM  
Sbjct: 16  GMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTDIVEKEMYS 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                     + P   + +   FR E   R    R R+F
Sbjct: 76  FVDSLNGEHLTLRPENTAAVVRAAIEHNMLYDGPKRLWYLGPMFRHERPQRG---RYRQF 132

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +       +      M           G+K                 E I   +
Sbjct: 133 HQVGVEALGFAGPDADAEIIMMCQRLWDDLGLAGIKLEINSLGLAEERAAHRVELIKYLE 192

Query: 216 TGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                +     +     P+   +T    +  +     +        S  H E L   L  
Sbjct: 193 QHAESLDDDAQRRLYTNPLRVLDTKNPALQEIVQNAPKLIDFLGDASRAHFEGLQRLLKA 252

Query: 274 NKR------VSARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           N           RG++     +F + T     + A    A G  +   +   G       
Sbjct: 253 NNLPFTINPRLVRGLDYYNLTVFEWVTD---KLGAQGTVAAGGRYDPLIEQLGGKPTAAC 309

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW---- 381
              +      + +   + +   +   + +       R+       RL   G DV      
Sbjct: 310 GWAMGVERILELLKEENLMPEQEGVDVYVVHQGDAAREQAFIAAERLRDTGLDVILHCSA 369

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-------GIREDMSLEEV 434
           D  G    SQ   AD  G    VI G   V++    +K            +++ + +E +
Sbjct: 370 DGAGASFKSQMKRADASGAAFAVIFGEDEVANGAASVKPLRGAGADGEKNVQQSVPVESL 429

Query: 435 INYASH 440
             +  +
Sbjct: 430 TEFLIN 435


>gi|109899430|ref|YP_662685.1| histidyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
 gi|122971704|sp|Q15R57|SYH_PSEA6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|109701711|gb|ABG41631.1| histidyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
          Length = 426

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 118/438 (26%), Gaps = 64/438 (14%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP            IRE     G  E+  P ++S DL+  S G   D   KEM   ADRN
Sbjct: 15  LPEQSGLWQWAEKAIREVVASYGYQEVRTPIVESTDLFKRSIGEVTDIVEKEMYTFADRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF----- 155
           D ++   P     +      H   Y      +Y     FR E   +    +  +F     
Sbjct: 75  DDSLTLRPEGTASVVRAGNEHGLLYNQQQRLWYL-GPMFRHERPQKGRYRQFHQFGVEVF 133

Query: 156 -------------------------LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
                                             L    ++ +Y K  V +L        
Sbjct: 134 GLAGPDIDAEVIALSARLWKKFGISEQVTLELNSLGSNEARETYRKALVEFLLARKEHLD 193

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADT--GETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
           +    R ES P+    S    V A      + +            +     D +     +
Sbjct: 194 EDSLRRLESNPLRVLDSKNPQVQAAITDAPSLIDYLDAESKEHFHALCERLDALGIQYRV 253

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK 308
             +        +    E + DSL     V A G   G +   G K +             
Sbjct: 254 NPRLVRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVEQLGGKST------------- 300

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
               Q   + IG  R+V                          + + A          +I
Sbjct: 301 ----QGVGFAIGMERLV---------LMLQASGAEEFVASPVDVYVTAMGDEVELYALQI 347

Query: 369 YARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGI 425
              L  V     V     G     Q   AD     + +++G     + +V IK  R    
Sbjct: 348 AESLRDVMPTLRVQTHFGGGNFKKQMKRADKSAARVALVLGETEQQEEQVSIKFLREDKP 407

Query: 426 REDMSLEEVINYASHRFS 443
           +  ++  E+ +     FS
Sbjct: 408 QSRIARSELESTLVELFS 425


>gi|306836221|ref|ZP_07469205.1| histidine--tRNA ligase [Corynebacterium accolens ATCC 49726]
 gi|304567942|gb|EFM43523.1| histidine--tRNA ligase [Corynebacterium accolens ATCC 49726]
          Length = 429

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 59/417 (14%), Positives = 116/417 (27%), Gaps = 26/417 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+  + P        V   + E+ + +G   + +P  +   L+        D   KEM  
Sbjct: 17  GVPDYYPPESATFYKVRQTMVEQAHLSGFQHIELPIFEDTALFARGVGESTDVVSKEMYT 76

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR ++++   P     +      H      +P         FR E RP+ G  R  + 
Sbjct: 77  FADRGERSVTLRPEGTAGVMRSVIQHNLDRGQMPVKLNYSGPFFRYE-RPQAGRYRQLQ- 134

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYL------------RIFHRLGLKSIPMRAESGPIG 203
            +         P            SY              +  R    +   + +     
Sbjct: 135 QVGVEAIGVDDPALDAEVIALADRSYRALGLSGFRLELTSLGDRNCRPAYREKLQEFLFK 194

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            DL  E    A+    +V   K        ++     D ++        T          
Sbjct: 195 LDLDEETRRRAEINPLRVLDDKRPEMQEQLADAPLMLDYLNAECREHFETVTGMLDDMGV 254

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             ++   +        +          G +  +     + G   +     +   G G   
Sbjct: 255 AYEINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQDLSGIGYGLGV 314

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--W 381
             A +   +           V  + I+L                I   L K G      +
Sbjct: 315 DRAILALETEGITLEGSDSRVDVYGIALGTAAKRRMTG------IINDLRKAGIAADMSF 368

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            D G + G+    AD  G    +++G + + +  V +K      + D+ L +++   
Sbjct: 369 GDRGLK-GAM-KGADRAGARFALVLGDQELENGTVAVKDLAAHEQRDVELSQLVALL 423


>gi|300123873|emb|CBK25144.2| unnamed protein product [Blastocystis hominis]
          Length = 269

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 59/157 (37%), Gaps = 13/157 (8%)

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-------GKGIIWPDSVAPFKISLIN 353
           T      +     +     G  R++ +++E +            + +  +VA FK S++ 
Sbjct: 96  TVLKIHEEKFIPSVVEPSFGVGRLIYSILEHAFYVREGEEKRNVMAFKPTVAAFKCSVMP 155

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I  + +      ++I A L         D     IG ++A AD +G P  V +  + V +
Sbjct: 156 IN-NSEQFTPIVDRIGASLRSYALAFKTDASSASIGRRYARADEIGIPFAVTIDFETVDE 214

Query: 414 -----SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
                + V ++ R +  +  + +E+V    +      
Sbjct: 215 KSELFNTVTLRERDSMKQVRLPIEDVAVVVNDIVKER 251


>gi|227503528|ref|ZP_03933577.1| histidyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
 gi|227075564|gb|EEI13527.1| histidyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
          Length = 429

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 63/421 (14%), Positives = 119/421 (28%), Gaps = 34/421 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+  + P        V   + E+ + +G   + +P  +   L+        D   KEM  
Sbjct: 17  GVPDYYPPESATFYKVRQTMVEQAHLSGFQHIELPIFEDTALFARGVGESTDVVSKEMYT 76

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR ++++   P     +      H      LP         FR E RP+ G  R  + 
Sbjct: 77  FADRGERSVTLRPEGTAGVMRSVIQHNLDRGQLPVKLNYSGPFFRYE-RPQAGRYRQLQ- 134

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYL------------RIFHRLGLKSIPMRAESGPIG 203
            +         P            SY              +  R    +   + +     
Sbjct: 135 QVGVEAIGVDDPALDAEVIALADRSYRALGLSGFRLELTSLGDRNCRPAYREKLQEFLFK 194

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            DL  E    A+    +V   K     P   E      ++      E        T  + 
Sbjct: 195 LDLDEETRRRAEINPLRVLDDKR----PEMQEQLADAPLMLDYLNAECREHFETVTGMLD 250

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           +  +     E      RG++      F     +      +   G           +G   
Sbjct: 251 DMGVAY---EINPRMVRGLDYYTKTCFEF---VHDGLGAQSGIGGGGRYDGLMAQLGGQD 304

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK----IYARLSKVGCDV 379
           +         D   +         + S   +  +      A ++    I   L K G   
Sbjct: 305 LSGIGYGLGVDRAILALEAEGITLEGSDSRVDVYGIALGTAAKRRMTGIINDLRKAGIAA 364

Query: 380 F--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
              + D G + G+    AD  G    +++G + + +  V +K      + D+ L +++  
Sbjct: 365 DMSFGDRGLK-GAM-KGADRAGARFALVLGDQELENGTVAVKDLAAHEQRDIELSQLVAV 422

Query: 438 A 438
            
Sbjct: 423 L 423


>gi|194246927|emb|CAQ76828.1| prolyl-tRNA synthetase [Campylobacter concisus]
          Length = 221

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/123 (38%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 261 DVHNEKLFDSLP--ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           D+   K  D  P        ++GIEVGHIF  G KYS  M+AT+   +GK     MG YG
Sbjct: 99  DLVKVKEGDKCPVCGGNLKLSKGIEVGHIFQLGDKYSAAMNATYLDENGKAKPFLMGCYG 158

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           IG  R++A +IE+SHD KG IW    APF + +I     D+       ++Y  L K G  
Sbjct: 159 IGISRLIAVMIEASHDEKGCIWKKECAPFDVEIIISNLKDEAGVKFAFELYESLKKAGVS 218

Query: 379 VFW 381
           +  
Sbjct: 219 III 221


>gi|307213760|gb|EFN89098.1| Glycyl-tRNA synthetase [Harpegnathos saltator]
          Length = 741

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/414 (12%), Positives = 118/414 (28%), Gaps = 76/414 (18%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R    +   LPF   QI   FR+E+ PR G++R REF M +   F
Sbjct: 303 FLRPETAQGIFVNFKRLLAFNQERLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHF 362

Query: 164 DLTPEGSKHSYNKMFVS----YLRIFHRLGLKSIPMRA-----------ESGPIGGDLSH 208
                 S   +  +       Y       G  +  +             E+        H
Sbjct: 363 CDPSNKSHSKFETVKDIDMLLYSACNQMDGKSAQRITIGEAVTSGLVANETLGYFMARIH 422

Query: 209 EFIVLADTGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +F++       ++   +    +    + +    + ++    VE       +  D+     
Sbjct: 423 QFLLKVGVDPVRLRFRQHMSNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHTR 482

Query: 268 FDSLP---ENKRVSARGIE----------VGHIFYFGTKYSLPMSAT-----------FK 303
              +    E K  + + +           +G  F   +K       T             
Sbjct: 483 ATGVKLVAEKKLPAPKTVAVCEVVPNRVVIGKTFKKNSKAVQDALVTLDENEIISLEKVI 542

Query: 304 GADGKD-----------------------------HYVQMGSYGIGAMRVVAAVIESSHD 334
             +G+                                  +     G  R++ A+ E +  
Sbjct: 543 NENGEYELALADNIVKITKDMIEVKRYQKTVHVEEIVPSVIEPSFGIGRIMYALFEHNFR 602

Query: 335 GKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +      +       +  +K      + +       +K+   L+K       DD    I
Sbjct: 603 TREGDEKRTYFTLPPVIAPLKCSVLPLSGNDEFVPFVKKLSQALTKADISHKVDDSSGSI 662

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHR 441
           G ++A  D +  P  + +    +       ++ R +  +  ++L+E+       
Sbjct: 663 GRRYARTDEIAIPFGITIDFDTLKTPHSATLRDRDSMGQVRINLDELPGVVKDL 716



 Score = 42.8 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 11/71 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIR------EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           G Y + P+G     N+    R      E+      +E+    L    +   SG  + +  
Sbjct: 154 GQYDFGPMGCSLKTNILNFWRNFFVLEEQM-----LEVDCSILTPEPVLKASGHVERFAD 208

Query: 92  EMLRLADRNDK 102
            M++     + 
Sbjct: 209 LMVKDIKTGEC 219


>gi|144897743|emb|CAM74607.1| Histidyl-tRNA synthetase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 411

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 63/422 (14%), Positives = 117/422 (27%), Gaps = 41/422 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G +  LP   +    V         R G  E+  P  +  +++  +     D   KEM  
Sbjct: 9   GTHDLLPEDSRRHRFVEETAFGVAKRYGYGEIVTPIFEFTEVFSRTLGETSDVVTKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR+  ++   P     +   F S   + ++LP         FR E   +    R R+F
Sbjct: 69  FADRSGDSITLRPEGTAGVARAFISGGLT-QSLPLKVMYRGPMFRHERPQKG---RLRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLR----------------IFHRLGLKSIPMRAES 199
                    +    +      M    L                            + A  
Sbjct: 125 HQVGCELLGVDGPQADIEVISMAWRILAALGLSDKVQLEINTLGDAESRAAYRAALIAYL 184

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
            P+   LS E          +V  SKD  D  + ++     D ++  +           T
Sbjct: 185 EPLRLSLSEESQARLQKNPLRVLDSKDEEDKRVVADAPLMGDSLTPAAKDFFDQVTAGLT 244

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +      +   L                   G + ++     + G  G+         G 
Sbjct: 245 ALGIPFVVNPKLVRGLDYYCHTAFEFTTTALGAQGTVLAGGRYDGLIGQMGGPATPGIGW 304

Query: 320 --GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
             G  R+   V +     + I                             +  RL   G 
Sbjct: 305 AAGIERLSMLVQDLPELDRPISIIPMGDTLP----------------ALVLADRLRAAGL 348

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V     G  +  + A A+       VI+G   ++   V ++    G ++++ L++V   
Sbjct: 349 SVDMGFSG-NMKKRMARANKANARFAVILGEDELARGAVTLRDLDAGTQDEIPLDQVEGR 407

Query: 438 AS 439
            +
Sbjct: 408 LT 409


>gi|71895709|ref|NP_001026681.1| glycyl-tRNA synthetase [Gallus gallus]
 gi|326921448|ref|XP_003206971.1| PREDICTED: glycyl-tRNA synthetase-like [Meleagris gallopavo]
 gi|53136800|emb|CAG32729.1| hypothetical protein RCJMB04_34b10 [Gallus gallus]
          Length = 685

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 72/282 (25%), Gaps = 22/282 (7%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 375 FRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLIAEKLLKE 434

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV-------------GHI 287
                    E              + + + L          +E              G  
Sbjct: 435 PKTVNIVQFEANKGAIGKAYKKDAKVVMEYLSMCDECYVTEMEQLLNDKGEFTVETEGKT 494

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F              K    ++    +     G  R++  V E +   +      +   F
Sbjct: 495 FTLTKDMVTVKRFQ-KTLHVEEIVPNVIEPSFGIGRIMYTVFEHTFRIREGDEQRTFFSF 553

Query: 348 KISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
              +   K      + +Q      +++   L++ G     DD    IG ++A  D +G  
Sbjct: 554 PAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGISHKVDDSSGSIGRRYARTDEVGVA 613

Query: 402 LQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHR 441
             + +    V+       ++ R +  +    + E+       
Sbjct: 614 FGITIDFDTVNRTPHTATLRDRDSMRQIRAEVSELPAIIRDL 655



 Score = 50.9 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 91  SGLYDFGPVGCALKNNIIQAWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 150

Query: 96  LADRNDK 102
                + 
Sbjct: 151 DMKNGEC 157


>gi|300122461|emb|CBK23032.2| Glycyl-tRNA synthetase [Blastocystis hominis]
          Length = 686

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 59/157 (37%), Gaps = 13/157 (8%)

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-------GKGIIWPDSVAPFKISLIN 353
           T      +     +     G  R++ +++E +            + +  +VA FK S++ 
Sbjct: 513 TVLKIHEEKFIPSVVEPSFGVGRLIYSILEHAFYVREGEEKRNVMAFKPTVAAFKCSVMP 572

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I  + +      ++I A L         D     IG ++A AD +G P  V +  + V +
Sbjct: 573 IN-NSEQFTPIVDRIGASLRSYALAFKTDASSASIGRRYARADEIGIPFAVTIDFETVDE 631

Query: 414 -----SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
                + V ++ R +  +  + +E+V    +      
Sbjct: 632 KSELFNTVTLRERDSMKQVRLPIEDVAVVVNDIVKER 668



 Score = 38.2 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+      N   + ++        +E+    L        SG  D +   M++
Sbjct: 92  AGLYDFGPITCSLKSNFINLWKQHFILEEDMLEVECTNLTPYCALKTSGHVDKFTDLMVK 151

Query: 96  LADRNDK 102
            +   + 
Sbjct: 152 DSKTGEC 158


>gi|329897036|ref|ZP_08271808.1| Histidyl-tRNA synthetase [gamma proteobacterium IMCC3088]
 gi|328921476|gb|EGG28862.1| Histidyl-tRNA synthetase [gamma proteobacterium IMCC3088]
          Length = 424

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 63/424 (14%), Positives = 125/424 (29%), Gaps = 27/424 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP+  ++   +   +R      G  E+ +P L+S  L+  S G   D   KEM  
Sbjct: 9   GMPDILPVDTESWQWLEQKVRNLVQSYGYQEIRMPILESTHLFARSIGEVTDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN  ++   P            +     + P   +     FR E   +  + + ++ 
Sbjct: 69  FADRNGDSLTLRPEGTAGCVRAAIQNNL--ISTPQRLWYQGPMFRHERPQKGRLRQFQQI 126

Query: 156 LMKDAYSFDLT--------------PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            ++                        G          S   +  R   K+  +   S  
Sbjct: 127 GLEAFGVATPDADAELIALSARLWRELGVADVVELQLNSIGSLEARATYKAALVEYLSKH 186

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
              DL  +      T   ++  SK+     + +   +  D +   S  +         S 
Sbjct: 187 -QADLDEDSQRRLQTNPLRILDSKNAGTQELLNNAPNLHDFLDDESANDFARLRTLLDSV 245

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
             + K+   L        + +        G + ++     + G   +         G   
Sbjct: 246 GVHYKVNPKLVRGLDYYNKTVFEWVTTELGAQGTICAGGRYDGLVAQLGGKTTPGVGFAM 305

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++         I     AP    +   +A ++ C    E +   L +       
Sbjct: 306 GLERVLLLL----AAQGITAPRSAPLAFGVGVGEAGEKACFTGIEALRNDLPQHDIR--L 359

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASH 440
           +  G    +Q   AD  G  + +I G     +  V +K  R    ++ ++   +      
Sbjct: 360 NTGGGSFKAQMKRADKSGARVALIWGDSEAENDTVTLKFLRDDEPQKTVASALLTQEL-E 418

Query: 441 RFSN 444
           R SN
Sbjct: 419 RISN 422


>gi|269959126|ref|YP_003328915.1| histidyl-tRNA synthetase [Anaplasma centrale str. Israel]
 gi|269848957|gb|ACZ49601.1| histidyl-tRNA synthetase [Anaplasma centrale str. Israel]
          Length = 430

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 61/401 (15%), Positives = 124/401 (30%), Gaps = 31/401 (7%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +  I      R G + +  P  +  D+++++     D  GKEM    DR    ++  P  
Sbjct: 26  IRDIAHSMGERYGFVPVETPIFEFQDVFLKTLGDSSDIIGKEMYSFPDRGGDVLVLRPEL 85

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +  +          LP   +     FR E   +    R R+F   +   F       
Sbjct: 86  TAAVARMLICERL---ALPARLFTFGPVFRYERPQKC---RQRQFHQINYEHFGAGCTAD 139

Query: 171 KHSYNKMFVS---------YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
                  +                + LG +   ++ +S  +     HE  +  D+     
Sbjct: 140 AELMALAYDILGALNLRNKVHLEINSLGSQDSILKYKSSLLQYFSEHEHALSGDSRRRVH 199

Query: 222 FCSKDFMDFPIPSENTDFDD--IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                 +D     +     +  +++     E   A       + N  +  ++   + V  
Sbjct: 200 TNPLRILDSKDRGDMAILCNAPVVADFYDDESKMAFDGVVRQLDNLGIPHTV-NPRLVRG 258

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
                G +F F T       A   G         MG    G                 ++
Sbjct: 259 LDYYCGVVFEFKTTCLGAQDAVIAGGRYDKLVASMG----GDNVPAVGFAGGMERLASLV 314

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF--AVADL 397
                  F ++ + +    +   +   +    L   G  V  D   E++  +     AD 
Sbjct: 315 DYSHGTGFSVAFLPLG---EGAVECAMRSAYELRSRGIRVLCDGAVEKL--KIGLKHADR 369

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            G  L +I+G + ++  +V  +H  TG +E +S+ ++ +Y 
Sbjct: 370 SGVDLALILGDEEIAKGEVLCRHMATGAQETVSICKLGDYV 410


>gi|126663425|ref|ZP_01734422.1| histidyl-tRNA synthetase [Flavobacteria bacterium BAL38]
 gi|126624373|gb|EAZ95064.1| histidyl-tRNA synthetase [Flavobacteria bacterium BAL38]
          Length = 474

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 1/99 (1%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
                      + +   D+       +   +L + G  V       +IG QF  AD  G 
Sbjct: 377 FPEAVLATSKALFLNFGDKEAL-YAMQAIGKLRQAGIKVELYPDNAKIGKQFQHADKRGI 435

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           P  V+VG + + +++  IK+  +G ++ +  E ++    
Sbjct: 436 PFTVLVGEEEIQNNQYAIKNLASGEQQKVDFETLVALLK 474


>gi|119719569|ref|YP_920064.1| histidyl-tRNA synthetase [Thermofilum pendens Hrk 5]
 gi|119524689|gb|ABL78061.1| histidyl-tRNA synthetase [Thermofilum pendens Hrk 5]
          Length = 431

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 62/423 (14%), Positives = 120/423 (28%), Gaps = 29/423 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   WLP    A   V+  IRE     G  E+  P  +  DL       +   +++    
Sbjct: 12  GTRDWLPEEAYAKRIVSEKIREVFESYGYGEVITPAFEYLDLLKAK-AGEEVVEQIYAFK 70

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D+  + +         +  I  S +   + L F +   Q  +R E   R    R REF  
Sbjct: 71  DKAGRELGLRFEMTTPIARIVASRLDLAKPLRFYYV--QPVWRYEEPQRG---RWREFWQ 125

Query: 158 KDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGP------IGGDLSHEF 210
                F ++            F +   +  +     +  R           I GDL    
Sbjct: 126 AGIELFGISEPEGDAEVVAVTFDALKAVGLKDFDIRVNDRRVVEDLVLGAGIPGDLLPSA 185

Query: 211 IVLADT----GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           + + D     GE  V      +     +  +  + + S +  ++  T P           
Sbjct: 186 LRVLDKMDKFGEEYVVSELAKLGLREDAATSLLEKLKSGSLDIDTSTQP-GREGLRRLAL 244

Query: 267 LFDSLPENKRV-------SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM---GS 316
           + D+L     +         RG+     F F  K             G+   +     G 
Sbjct: 245 VVDTLKNCYGINVTVDYAIVRGLGYYTGFVFEVKAGSSEGLGSIAGGGRYDDLVSVVGGP 304

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
               +   +                       + +I +K   ++  +    +   L   G
Sbjct: 305 KIPASGMAIGVERLLEALSMQGALKLDYREVDVCVIPVKKTPEILSE-AVAVARELRVAG 363

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
             V  +     +      A   G    +I+G + + +  V ++       E ++   +  
Sbjct: 364 MKVVLEVSERSLSKLLEAASKRGARFAIILGERELKEGVVTVRDLYLWKEEKVARPHLYE 423

Query: 437 YAS 439
           Y  
Sbjct: 424 YIR 426


>gi|76155685|gb|AAX26970.2| SJCHGC07933 protein [Schistosoma japonicum]
          Length = 118

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 55/103 (53%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
           +  +  ++ +   + GA  + +PTL   ++W +SGR+      + +L DR        PT
Sbjct: 1   MRKLENLVDKYMLKLGAQRVQLPTLGPRNMWEKSGRWSEMHSSLFKLRDRLSHDYCLQPT 60

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           HEE +T    S   SY++LP   YQI  KFRDE RP+ G++R 
Sbjct: 61  HEECITSFVTSLKLSYKSLPVFLYQITSKFRDEPRPKNGLIRG 103


>gi|190408722|gb|EDV11987.1| glycine-tRNA ligase [Saccharomyces cerevisiae RM11-1a]
 gi|207347667|gb|EDZ73764.1| YBR121Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256268958|gb|EEU04303.1| Grs1p [Saccharomyces cerevisiae JAY291]
 gi|323349729|gb|EGA83944.1| Grs1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 667

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 6/142 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              +++   +     G  R++ +V E S   +      SV  F   +   K      ++ 
Sbjct: 497 EHVREYVPSVIEPSFGIGRIIYSVFEHSFWNRPEDNARSVLSFPPLVAPTKVLLVPLSNH 556

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++   L K       DD G  IG ++A  D LG P  V +  +   D  V +
Sbjct: 557 KDLVPVTTEVAKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESAKDHSVTL 616

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R +  +   S+E+VI     
Sbjct: 617 RERDSTKQVRGSVEDVIKAIRD 638



 Score = 50.5 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G    +N+    R+        +E+    L   ++   SG  D +   M R
Sbjct: 41  SGLYDYGPPGCAFQNNIIDAWRKHFILEEDMLEVDCTMLTPYEVLKTSGHVDKFSDWMCR 100


>gi|187931008|ref|YP_001890992.1| histidyl-tRNA synthetase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|229558668|sp|B2SEW9|SYH_FRATM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|187711917|gb|ACD30214.1| histidyl-tRNA synthetase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 421

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 61/418 (14%), Positives = 123/418 (29%), Gaps = 34/418 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LPL       + + ++   +R    E  +P ++ ++L+  S     D   KE     DRN
Sbjct: 14  LPLDSYKWQLLESKVKLILDRYNYSETRLPIVERSELFHRSVGESSDIVSKETYDFQDRN 73

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P        +   +  + R      +     FR E   +    R R+F     
Sbjct: 74  GDSLTLRPEGTAGCVRMVIENNLATRGQTQKLWYCGPMFRYERPQKG---RYRQFYQLGV 130

Query: 161 YSFDLT-----------------PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            ++                      G          S     +R       ++    P  
Sbjct: 131 EAYGFDGIAIDLEVIAIAWSLFKELGISEYVTLELNSLGSSLNRQEYTQALLQY-LKPYH 189

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            +L  + I   D    ++  SK      I +      D I  +  +          +   
Sbjct: 190 AELDEDSIKRLDKNPLRILDSKIEKTQKILANAPKLIDFIDHDLRLRFKQTCQYLDALGV 249

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGA 321
             KL ++L          +        G++ ++     + G   +          + IG 
Sbjct: 250 RYKLNENLVRGLDYYTGLVFEWTTDKLGSQSAICAGGRYDGLVENLGGQKTAAIGFAIGM 309

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++  + +           D       + ++            E I   L ++  D   
Sbjct: 310 ERLLLLLEDLGKLPNQDNACDVFFILDSAQLH------QSLAIVENIRQELPQLKID--M 361

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYA 438
           D       SQF  AD  G  + +I+G   + +    IK       ++ ++  E+IN+ 
Sbjct: 362 DLKFGSFKSQFKKADKSGAKVAIIIGQDELDNGFAGIKFLQQNEEQQQVAFNELINFL 419


>gi|151946513|gb|EDN64735.1| glycyl-tRNA synthetase [Saccharomyces cerevisiae YJM789]
          Length = 667

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 6/142 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              +++   +     G  R++ +V E S   +      SV  F   +   K      ++ 
Sbjct: 497 EHVREYVPSVIEPSFGIGRIIYSVFEHSFWNRPEDNARSVLSFPPLVAPTKVLLVPLSNH 556

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++   L K       DD G  IG ++A  D LG P  V +  +   D  V +
Sbjct: 557 KDLVPVTTEVAKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESAKDHSVTL 616

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R +  +   S+E+VI     
Sbjct: 617 RERDSTKQVRGSVEDVIKAIRD 638



 Score = 50.5 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G    +N+    R+        +E+    L   ++   SG  D +   M R
Sbjct: 41  SGLYDYGPPGCAFQNNIIDAWRKHFILEEDMLEVDCTMLTPYEVLKTSGHVDKFSDWMCR 100


>gi|311694385|gb|ADP97258.1| histidyl-tRNA synthetase [marine bacterium HP15]
          Length = 426

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/417 (13%), Positives = 120/417 (28%), Gaps = 31/417 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        V + +R    + G  E+ +P ++  DL+  S G   D   KEM  
Sbjct: 9   GMNDILPEQTPVWQFVESTVRRVLAQYGYQEIRMPIVEQTDLFKRSIGEVTDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H   +       +     FR E   +    R R+F
Sbjct: 69  FEDRNGDSLTLRPEGTAGCVRAAEEHGLLFNQ-TRRLWYTGPMFRHERPQKG---RYRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF----------VSYLRIFHRLGLKSIPMRAESGPIGGD 205
                  F +           +                  + +G         S  +   
Sbjct: 125 HQIGVECFGMNGPDIDAELLILTARLWKELGLAEHTRLEINSIGTSESRRVYRSALVDYL 184

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA------T 259
              +  + AD+           +D   PS     ++  SL+  +++ +  +         
Sbjct: 185 GQFKADLDADSQRRLESNPLRILDSKDPSTRKILENAPSLDDYLDEESREHFERLKALLE 244

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +   N  +  +L        + +        G + ++     + G   +       + G 
Sbjct: 245 AAGVNYSVNPALVRGLDYYGKTVFEWITDSLGAQGTVCAGGRYDGLVEQLGGKPTFAVGF 304

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV-GCD 378
                   ++  + +        +   +      + A  +        +  +L       
Sbjct: 305 AMGLERLILLLETLELVPEHVNSNADVY------VTAMGEGALAPALVLAEQLRAALPER 358

Query: 379 VFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEE 433
           V      G    SQ   AD  G    VI+G   V++    +K  R    + +++ ++
Sbjct: 359 VIVSHCGGGSFKSQMKKADRSGARYAVILGENEVANGTAGLKPLRADEPQAEIAQDK 415


>gi|326335224|ref|ZP_08201420.1| glycyl-tRNA synthetase beta subunit [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692632|gb|EGD34575.1| glycyl-tRNA synthetase beta subunit [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 515

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                 +   +I   L      V +D+    +G ++   D +G P  V V  +   D+ V
Sbjct: 421 KKDGLPEIALQILNDLK-YDFTVAYDEKDA-VGRRYRRQDAVGTPFCVTVDHQTKEDNTV 478

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            I+HR T  ++ + +  + +        N+
Sbjct: 479 TIRHRDTMEQQRVPIASLKDIIFKEVDMNQ 508


>gi|212550514|ref|YP_002308831.1| glycyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548752|dbj|BAG83420.1| glycyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 515

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/346 (13%), Positives = 103/346 (29%), Gaps = 48/346 (13%)

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D   +  +   T + +  +           +PF   QI   FR+E+  R  + R REF  
Sbjct: 208 DAKMEIYLRPETAQGIFANFLNVQKSGRMKIPFGIAQIGKAFRNEIVTRQFIFRMREFEQ 267

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            +   F   P      + +     ++    LGL             G+  + F       
Sbjct: 268 MEMQFFVR-PGEEFQWFERWKQIRMKWHKALGL-------------GNHKYRFHDHNRLA 313

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
                 +    + P                        +     +H+   FD     K  
Sbjct: 314 HYANAATDIEFEMPF----------------------GFKEVEGIHSRTDFDLNNHEK-- 349

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                  G    F           +             S   G+      +++       
Sbjct: 350 -----YSGKKIRFFDPNINKSYVPYVIETSIGLDRIFLSILAGSY--CKEILKGKDSRVV 402

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +  P ++AP K++++ +   D    +   +I  +L        +D+    IG ++   D 
Sbjct: 403 LKLPPALAPVKLAILPLVRKD-GFPEKAREIMDQLKVS-FRCQYDEKD-SIGKRYRRQDA 459

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G P    +    +   ++ I+ R T  +E +S++ +    + + +
Sbjct: 460 IGTPYCATIDQNTLDHDQLTIRSRDTMEQEHISIDWLQKVIADKVN 505


>gi|296413606|ref|XP_002836501.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630326|emb|CAZ80692.1| unnamed protein product [Tuber melanosporum]
          Length = 267

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDVFWDDMG-EQIGSQF 392
             +            +  K  D+  +      + +   LS+ G  V  D       G +F
Sbjct: 12  PPMVAQYQVVIVPCGLTAKTADEERKRLFQGVKDMATTLSQAGIRVKADTRETCSPGYKF 71

Query: 393 AVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGIREDMSLEEVINYASHRF 442
              +L G P+++  G K +   + + ++ R TG++  + L  +        
Sbjct: 72  NDWELKGVPVRLEFGPKDMEKKQALSVR-RDTGVKAGIPLGGLAEKVQTLL 121


>gi|196016607|ref|XP_002118155.1| hypothetical protein TRIADDRAFT_33686 [Trichoplax adhaerens]
 gi|190579281|gb|EDV19380.1| hypothetical protein TRIADDRAFT_33686 [Trichoplax adhaerens]
          Length = 677

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           P  VAP K S++ + A  +      +++ + L   G     DD    IG ++A  D +G 
Sbjct: 552 PPPVAPVKCSVLPLSAKKE-FDPYIKQLASELKLHGISNKVDDSAGSIGRRYARTDQIGI 610

Query: 401 PLQVIVGSKFVSDS--KVEIKHRLTGIREDMSLEEVINYASHRFS 443
           P  + V    V+++   V ++ R T  +  ++ +      S    
Sbjct: 611 PYGITVDFDTVTNNPATVTLRERNTMQQIRLNADIAPKVVSDLVK 655



 Score = 42.0 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G    +N+    R         +E+   +L    ++  SG  D +   +++
Sbjct: 91  AGLYDFGPTGCAMKNNLLQEWRLHFVLEEDMLEIESSSLAPEPVFKASGHLDRFLDYVVK 150

Query: 96  LADRNDK 102
                + 
Sbjct: 151 DVKTGEC 157


>gi|323356077|gb|EGA87882.1| Grs1p [Saccharomyces cerevisiae VL3]
          Length = 597

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 6/142 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              +++   +     G  R++ +V E S   +      SV  F   +   K      ++ 
Sbjct: 427 EHVREYVPSVIEPSFGIGRIIYSVFEHSFWNRPEDNARSVLSFPPLVAPTKVLLVPLSNH 486

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++   L K       DD G  IG ++A  D LG P  V +  +   D  V +
Sbjct: 487 KDLVPVTTEVAKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESAKDHSVTL 546

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R +  +   S+E+VI     
Sbjct: 547 RERDSTKQVRGSVEDVIKAIRD 568


>gi|302380644|ref|ZP_07269109.1| histidine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|303233887|ref|ZP_07320536.1| histidine--tRNA ligase [Finegoldia magna BVS033A4]
 gi|302311587|gb|EFK93603.1| histidine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302494812|gb|EFL54569.1| histidine--tRNA ligase [Finegoldia magna BVS033A4]
          Length = 431

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 61/441 (13%), Positives = 125/441 (28%), Gaps = 42/441 (9%)

Query: 31  MIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI   +  G+   LP  Q   D +   I +   +     +  P ++  D+ +  G  ++ 
Sbjct: 1   MIQPSTLPGMMELLPEDQLVFDTIKRKIEDVFIKNAFFSIDTPAIEKLDVLLSKGGGETS 60

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            +       + ++ + +  T                   PF  YQI   +R E   +   
Sbjct: 61  KQVFRIDNSKKNQGLRFDLTVPLAKYVSMYMQDL---AFPFRRYQIAKVYRGERNQKG-- 115

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL----RIFHRLGLKSIPMRAESGPIGGD 205
            R +EF   D            +    +   Y             +    +  +G     
Sbjct: 116 -RYKEFYQCDIDIIGNEKLSLYNDAEIVKCMYEALKSIDVPEFEFQFNNRKILNGYFSYL 174

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE-----QWTAPYAATS 260
              +F       +       D +   +   N D   I +L   +E     Q       + 
Sbjct: 175 GIDDFESCLRVIDKLDKIGIDNVKEELSKINLDASKIDTLLKFLEIDGTNQEIIEKLESL 234

Query: 261 DVHNEKLFDSLPENK-------------------RVSARGIEVGHIFYFGTKYSLPMSAT 301
           ++ NE     + E K                       RG++      F T +       
Sbjct: 235 NIDNELFTCGVNELKFVYQDILSLGVNPENIKINLSITRGLDYYTGSVFETFFKDYPEIG 294

Query: 302 FKGADGKDHYVQMGSY---GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
              + G+   +          G    +          +  +       F   +I +K ++
Sbjct: 295 SICSGGRYDSLANNFTKSKLPGVGMSIGLTRLFYQLQELNLVKGKQTNFDCIIIPMKGYE 354

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       K+   L             +++  +F  AD L     +I+G   V  +K  +
Sbjct: 355 KN----AVKLMNDLRNSSVKCMSYLEDDKLKKKFNYADKLSVKYVIIIGQDEVEQNKFTL 410

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           ++   G +E + L E+I    
Sbjct: 411 RNMENGNQELLELNEIIEKLK 431


>gi|300122388|emb|CBK22959.2| unnamed protein product [Blastocystis hominis]
          Length = 680

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 59/157 (37%), Gaps = 13/157 (8%)

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-------GKGIIWPDSVAPFKISLIN 353
           T      +     +     G  R++ +++E +            + +  +VA FK S++ 
Sbjct: 507 TVLKIHEEKFIPSVVEPSFGVGRLIYSILEHAFYVREGEEKRNVMAFKPTVAAFKCSVMP 566

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I  + +      ++I A L         D     IG ++A AD +G P  V +  + V +
Sbjct: 567 IN-NSEQFTPIVDRIGASLRSYALAFKTDASSASIGRRYARADEIGIPFAVTIDFETVDE 625

Query: 414 -----SKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
                + V ++ R +  +  + +E+V    +      
Sbjct: 626 KSELFNTVTLRERDSMKQVRLPIEDVAVVVNDIVKER 662



 Score = 38.2 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+      N   + ++        +E+    L        SG  D +   M++
Sbjct: 86  AGLYDFGPITCSLKSNFINLWKQHFILEEDMLEVECTNLTPYCALKTSGHVDKFTDLMVK 145

Query: 96  LADRNDK 102
            +   + 
Sbjct: 146 DSKTGEC 152


>gi|323334582|gb|EGA75956.1| Grs1p [Saccharomyces cerevisiae AWRI796]
          Length = 597

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 6/142 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              +++   +     G  R++ +V E S   +      SV  F   +   K      ++ 
Sbjct: 427 EHVREYVPSVIEPSFGIGRIIYSVFEHSFWNRPEDNARSVLSFPPLVAPTKVLLVPLSNH 486

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++   L K       DD G  IG ++A  D LG P  V +  +   D  V +
Sbjct: 487 KDLVPVTTEVAKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESAKDHSVTL 546

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R +  +   S+E+VI     
Sbjct: 547 RERDSTKQVRGSVEDVIKAIRD 568


>gi|290878134|emb|CBK39193.1| Grs1p [Saccharomyces cerevisiae EC1118]
          Length = 667

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 6/142 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              +++   +     G  R++ +V E S   +      SV  F   +   K      ++ 
Sbjct: 497 EHVREYVPSVIEPSFGIGRIIYSVFEHSFWNRPEDNARSVLSFPPLVAPTKVLLVPLSNH 556

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++   L K       DD G  IG ++A  D LG P  V +  +   D  V +
Sbjct: 557 KDLVPVTTEVAKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESAKDHSVTL 616

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R +  +   S+E+VI     
Sbjct: 617 RERDSTKQVRGSVEDVIKAIRD 638



 Score = 54.0 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G    +N+    R+        +E+    L   ++   SG  D +   M R
Sbjct: 41  SGLYDYGPPGWAFQNNIIDAWRKHFILEEDMLEVDCTMLTPYEVLKTSGHVDKFSDWMCR 100


>gi|92114972|ref|YP_574900.1| histidyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043]
 gi|123265563|sp|Q1QTK7|SYH_CHRSD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|91798062|gb|ABE60201.1| histidyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043]
          Length = 428

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 60/409 (14%), Positives = 116/409 (28%), Gaps = 17/409 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP            I+    R G  E+  P L+   L+  S G   D   KEM  
Sbjct: 10  GMNDLLPEQSPVWQYFERQIQHLMQRYGYNEIRTPILEQTALFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            +   Y       +     FR E   +    +  + 
Sbjct: 70  FEDRNGDSLTLRPEGTASCVRAALENGLLYNQ-TQRLWYQGPMFRHERPQKGRYRQFHQV 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL-------GLKSIPMRAESGPIGGDLSH 208
            ++         +      +      L +   +       G            +    +H
Sbjct: 129 GVEAYGMLGPDIDFEMILLSARLWDALGLMPHVRLELNSLGSSEARAAYRDALVAYFEAH 188

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKL 267
             ++  D+           +D   P      +    L   ++  + A +   + + +   
Sbjct: 189 AEVLDEDSRRRLTSNPLRILDSKNPDMAEMLEAAPRLMDHLDDESRAHFEQLTAMLDAAG 248

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            D +   + V         +F + T+          G        Q+G      +     
Sbjct: 249 IDYVINPRLVRGLDYYSRTVFEWTTQALGSQGTVCAGGRYDGLVEQLGGKPTPGVGFAMG 308

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA---CEKIYARLSKVGCDVFWDDM 384
           V       + +      A  +  +      D   R+A    E +   L ++   V     
Sbjct: 309 VERLILLLETLDLVPEAARSRPDVYLTAMGDTASREAMLLGEHLRDALPEMHLQVHC--G 366

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLE 432
           G    SQ   AD  G  + +++G   ++   V IK  R    +E ++ E
Sbjct: 367 GGSFKSQIKKADKSGARIALMLGDDEIASGSVGIKFLREDREQESVARE 415


>gi|153208827|ref|ZP_01947051.1| histidyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|165921437|ref|ZP_02219625.1| histidyl-tRNA synthetase [Coxiella burnetii RSA 334]
 gi|212218662|ref|YP_002305449.1| histidyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
 gi|229558651|sp|B6J7Q5|SYH_COXB1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|120575678|gb|EAX32302.1| histidyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|165916752|gb|EDR35356.1| histidyl-tRNA synthetase [Coxiella burnetii RSA 334]
 gi|212012924|gb|ACJ20304.1| histidyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
          Length = 421

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 129/412 (31%), Gaps = 39/412 (9%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +    R   +     E+  P ++   L+  +     D   KEM    DRN  ++   P  
Sbjct: 25  LENACRSVVSAYHYREIRFPVVEQTALFKRTIGEATDIVEKEMYTFTDRNGDSLTLRPEG 84

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
                     +   Y  +   +Y     FR E   +    R R+F      ++ +     
Sbjct: 85  TAGCVRAGIQNGLLYNQIQRLWYL-GPMFRHERPQKG---RYRQFYQLGVETYGMAGAPI 140

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMR-------AESGPIGGDLSHEFIVLADTGETQVFC 223
           +     M    LR++  LGL+S            +S          ++   +  E     
Sbjct: 141 EAELIFMC---LRLWKALGLESCIHLELNTLGTLDSRNAYRQALVTYLQSREK-ELDEDS 196

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR------V 277
            +     P+   ++   D+  L +   +       TS  H ++L   L + +        
Sbjct: 197 RRRLHTNPLRILDSKNPDLQPLLAEAPKLIDYLDETSRRHFDQLRSLLDQAEVPFIVNPT 256

Query: 278 SARGIEV--GHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
             RG++     +F       G + ++     +             + G  A      ++ 
Sbjct: 257 LVRGLDYYTHTVFEWVTDQLGAQGTVCAGGRYDNLVELLGGKSTPAAGFAAGLERLVLLL 316

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                        V     ++I      Q      E++   L +   +   D  G  + S
Sbjct: 317 RGVQECLDKIDIYVVIAGEAVI------QEGLLMTEQLRNVLPEWVIEA--DLSGSSLKS 368

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHR 441
           QF  AD  G    +++  + +  + V +KH R T  ++ ++ + +I Y    
Sbjct: 369 QFKRADKSGAKWALVIAEEEIKTNTVTLKHLRETVPQKSLTRDTLIPYLKSE 420


>gi|169824387|ref|YP_001691998.1| histidyl-tRNA synthetase [Finegoldia magna ATCC 29328]
 gi|229558667|sp|B0S168|SYH_FINM2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|167831192|dbj|BAG08108.1| histidyl-tRNA synthetase [Finegoldia magna ATCC 29328]
          Length = 431

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 65/441 (14%), Positives = 126/441 (28%), Gaps = 42/441 (9%)

Query: 31  MIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI   +  G+   LP  Q   D +   I +   +     +  P ++  D+ +  G  ++ 
Sbjct: 1   MIQPSTLPGMMELLPEDQLVFDTIKRKIEDVFIKNAFFSIDTPAIEKLDVLLSKGGGETS 60

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            +       + ++ + +  T                   PF  YQI   +R E   +   
Sbjct: 61  KQVFRIDNSKKNQGLRFDLTVPLAKYVSMYMQDL---AFPFRRYQIAKVYRGERNQKG-- 115

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL----RIFHRLGLKSIPMRAESGPIGGD 205
            R +EF   D            +    +   Y             +    +  +G     
Sbjct: 116 -RYKEFYQCDIDIIGNEKLSLYNDAEIVKCMYEALKSIDVPEFEFQFNNRKILNGYFSYL 174

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE-----QWTAPYAATS 260
              +F       +       D +   +   N D   I +L   +E     Q       + 
Sbjct: 175 GIDDFESCLRVIDKLDKIGIDNVKEELSKINLDASKIDTLLKFLEIDGTNQEIIEKLESL 234

Query: 261 DVHNEKLFDSLPENK-------------------RVSARGIEV--GHIFY-FGTKYSLPM 298
           ++ NE     + E K                       RG++   G +F  F   Y    
Sbjct: 235 NIDNELFTCGVNELKFVYQDILSLGVNPENIKINLSITRGLDYYTGSVFETFFKDYREIG 294

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           S    G           S   G    +          +  +       F   +I +K ++
Sbjct: 295 SICSGGRYDSLANNFTKSKLPGVGMSIGLTRLFYQLQELNLVKGKQTNFDCIIIPMKGYE 354

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       K+   L             +++  +F  AD L     +I+G   V  +K  +
Sbjct: 355 KN----AVKLMNDLRNSSVKCMSYLEDDKLKKKFNYADKLSVKYVIIIGQDEVEQNKFTL 410

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           ++   G +E + L E+I    
Sbjct: 411 RNMENGNQELLELNEIIEKLK 431


>gi|241895559|ref|ZP_04782855.1| histidyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
 gi|241871137|gb|EER74888.1| histidyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
          Length = 435

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 60/420 (14%), Positives = 121/420 (28%), Gaps = 14/420 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP        V    R   +     E+  P  ++ D++  S     D   KEM  
Sbjct: 11  GTADLLPNESLKWHYVEETARLLFSDYQYAEVRTPIFENFDIFARSAGDTSDVVTKEMYD 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   F  +         P+  + I   FR E      + +  
Sbjct: 71  FKDKGDRHIALRPEGTAGVVRAFVENKLFGPEHAKPYKLFYIGPMFRYERPQAGRMRQFH 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +  ++   S     +    +    F   L I +     +     ES         +F+  
Sbjct: 131 QIGVEALGSESPALDAEVIAMAVDFFQTLGIANLKVKVNSLGDKESRENYRQALIDFLKP 190

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP- 272
               E      +     P+   ++       + +         +  +  H  K+   L  
Sbjct: 191 H-FEELSHDSQERLEKNPLRVLDSKDAKDQEIVANAPSILDYLSDDAQQHWLKVQQYLDA 249

Query: 273 -----ENKRVSARGIEV--GHIFYFGTK-YSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                E      RG++     IF   TK  +L    +     G+ + +     G     V
Sbjct: 250 LGIDYEVDATVVRGLDYYNHTIFEVMTKAKALGHGWSTITGGGRYNGLVSEFGGPEMAGV 309

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +               +       I +    Q    A  ++   +   G     D  
Sbjct: 310 GFGIGLERLMLLLESENAPLPDENKLDIYVANQGQDTDIAAMQMVQAIRSFGYSADRDYE 369

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
             ++ +QF  A+ L     + +G + +++    +K+  TG    + L E+         +
Sbjct: 370 DRKLKAQFKTANRLNARYMITIGERELAEQSANLKNMQTGKETAVKLAELYTNLPEYVES 429


>gi|326468704|gb|EGD92713.1| glycyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 654

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 71/203 (34%), Gaps = 1/203 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  ++ + +E  T        +  EK      E   V    +E+G       K     + 
Sbjct: 432 DSKTVENAIEALTQDMREKLSLDLEKNGKIEIEVDGVGEGKVEIGKDLVQIEKRMRVENV 491

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                +  +    +G      M               + +P +VAP K+ L+ +  H   
Sbjct: 492 REYTPNVIEPSFGIGRILYCLMEHAYWSRPDDEARGVLSFPPAVAPTKVLLVPLSTH-AS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +   +++  +L ++G     DD    IG +++  D LG P  +    + V D+   ++ 
Sbjct: 551 FQPLIQRLTLKLRRLGVSNRVDDSSASIGKRYSRNDELGTPFGITADFQSVKDNTFTLRD 610

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +   S +E+ N       
Sbjct: 611 RDTTKQVRASEDEICNAVKSLVD 633



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     NV  + R+        +E+    L   ++   SG  D +   M +
Sbjct: 36 SGLYDYGPPGCALQANVVDLWRKHFVLEEDMLEVDTSMLTPHEVLKTSGHVDKFADWMCK 95


>gi|167377346|ref|XP_001734365.1| glycyl-tRNA synthetase [Entamoeba dispar SAW760]
 gi|165904156|gb|EDR29482.1| glycyl-tRNA synthetase, putative [Entamoeba dispar SAW760]
          Length = 627

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 78/288 (27%), Gaps = 23/288 (7%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                     +         +     +     G   +   A    +   +   +    + 
Sbjct: 329 LKTEMAHYARDCWDAEIRLSYGWVECVGHADRGDFDLSNHARCSKVDQSVFIAYDEPKEV 388

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E  +  +K  M      ++       +      +             +   D +     
Sbjct: 389 KEVTLSFNKGVMGKKYKKDSQKLFAYAAGLDEAAKEAVAKEVEETGMWKVTVDGINFEIE 448

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            +   I++G                 K   G +    +     G  RV+ AV+E S   +
Sbjct: 449 KANITIKIGT----------------KKVYGDNIIPNVIEPSFGVGRVLTAVLEHSFWVR 492

Query: 337 GIIWPDSVAPFKISLINIKAH------DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                 SV     S+  +K             +   +I             +     IG 
Sbjct: 493 EDNEAKSVLSIPASIAPVKVGLFPLLTKPEFNNKVAEIEKICKNGFLSFKSNTTAVAIGK 552

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           ++A AD  G P  V V    +SD+ V ++ R T  +  + +++++   
Sbjct: 553 KYAQADEAGIPFDVTVDYTSLSDNTVTLRDRDTTKQIRIPIDKLVETV 600



 Score = 50.9 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 2/79 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y   PLG     N+    R+         E+  P L    +   SG    +   M++
Sbjct: 41  AGLYDMGPLGCALKQNILQFWRKHFTTYENFFEVEGPILTPKCVLAASGHTAKFSDYMVK 100

Query: 96  LADRNDKAMIYGPTHEEVM 114
              +N          +   
Sbjct: 101 DL-KNGCCYRADHLLKTFY 118


>gi|325577797|ref|ZP_08148072.1| histidine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
 gi|325160542|gb|EGC72668.1| histidine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
          Length = 423

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 121/412 (29%), Gaps = 27/412 (6%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               +   +R+  +  G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWIEGQVRQILSSYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYS 162
            P            H   Y N    +Y +   FR E       R       E        
Sbjct: 80  RPEGTAGCVRAAIEHGWIYNNEQRLWY-MGPMFRHERPQKGRYRQFHQAGVEVFGIATPE 138

Query: 163 FDLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            D           K            + +G         S  +    +H+ ++  +  E 
Sbjct: 139 IDAELIILTARLWKALGIDQHVSLQLNSIGSLEARANYRSALVAFLENHQDLMSEEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-APYAATSDVHNEKLFDSLPENKRVS 278
            V      +D    +     D    L   ++  +   +A    + +          K V 
Sbjct: 199 LVKNPLRILDTKNQALQDVLDGAPKLLDYLDDESREHFAQLCGLLDAVGIQYEINPKLVR 258

Query: 279 ARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   +F       G + ++     + G       H      + +G  R+V  V E 
Sbjct: 259 GLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATSGVGFAMGLERLVLLVQEV 318

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           +         D    ++     +           EK+ + L            G     Q
Sbjct: 319 NKSIPVKSAVDIYVVYQGEGTTL-----AAFQFAEKLRSELP--HLSTMLHCSGGNFKKQ 371

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHRF 442
           F  AD  G  L +++G   V +++V +KH      ++ + +  +I +   +F
Sbjct: 372 FKRADKSGATLALVLGESEVQNNQVVVKHLLGAAEQQTIDVSNLIEHVKAQF 423


>gi|73668741|ref|YP_304756.1| glycyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
 gi|72395903|gb|AAZ70176.1| glycyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
          Length = 607

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D  + I  +L +    V +DD G  IG ++   D +G P  V V    + D  V I
Sbjct: 510 KELADPAKDIIVKLREKTLLVNYDDSG-TIGRRYRRNDEIGTPYCVTVDYDTLKDGTVTI 568

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R +  +    ++ + N      
Sbjct: 569 RDRDSMRQIRAPVKGIENVLYELI 592



 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           G Y + PLG      +    RE    + G +E+  PT+   ++++ SG    +   +   
Sbjct: 29  GFYDYGPLGSTLKRRIEQTWREFYVIQEGFMEIECPTIGIEEVFIASGHVGGFSDPLCEC 88

Query: 97  ADRND 101
            +  +
Sbjct: 89  MNCKE 93


>gi|327300907|ref|XP_003235146.1| glycyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326462498|gb|EGD87951.1| glycyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 654

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 71/203 (34%), Gaps = 1/203 (0%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           D  ++ + +E  T        +  EK      E   V    +E+G       K     + 
Sbjct: 432 DSKTVENAIEALTQDMREKLSLDLEKNGKIEIEVDGVGEGKVEIGKDLVQIEKRMRVENV 491

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                +  +    +G      M               + +P +VAP K+ L+ +  H   
Sbjct: 492 REYTPNVIEPSFGIGRILYCLMEHAYWSRPDDEARGVLSFPPAVAPTKVLLVPLSTH-AS 550

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
            +   +++  +L ++G     DD    IG +++  D LG P  +    + V D+   ++ 
Sbjct: 551 FQPLIQRLTLKLRRLGVSNRVDDSSASIGKRYSRNDELGTPFGITADFQSVKDNTFTLRD 610

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
           R T  +   S +E+ N       
Sbjct: 611 RDTTKQVRASEDEICNAVKSLVD 633



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     NV  + R+        +E+    L   ++   SG  D +   M +
Sbjct: 36 SGLYDYGPPGCALQANVVDLWRKHFVLEEDMLEVDTSMLTPHEVLKTSGHVDKFADWMCK 95


>gi|221633028|ref|YP_002522253.1| histidyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
 gi|221155481|gb|ACM04608.1| histidyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
          Length = 462

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQI--GSQFAVADLLGFPLQVIVGSKFVSDSK 415
           +   R    +I   L + G D      GE+I    Q   AD  G P+ VI+G   +++  
Sbjct: 364 EADHRAQALRIARELRQAGLDTEVYL-GERIDLRRQLQYADRKGVPVAVIIGPDEIANDM 422

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFSNNRP 447
           V ++   TG +  +   E++          R 
Sbjct: 423 VTVRDLRTGEQVRVPRAELVAAVRKPLGAARQ 454



 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 7/146 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLRL 96
           G+  + P        V  ++R+   R G   +  P L+  ++   SG+Y +   K + R 
Sbjct: 22  GMRDFTPRQMLLRQRVMEVLRQVFERYGYDPIDTPLLEYYEVL--SGKYGEEGEKLLYRF 79

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +         +      H ++    PF  Y I   FR E   R    R R+F 
Sbjct: 80  VDQGGREVGLRYDLTVPLARYVAVH-RAELTFPFKRYHIGPVFRAERPQRG---RFRQFW 135

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYL 182
             D          +      +++  L
Sbjct: 136 QCDVDVVGTRSMMADAEVLSVWIDAL 161


>gi|328882341|emb|CCA55580.1| Glycyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 66

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +DD G  IG ++   D +G P  V V    + D+ V ++ R T  +E +SL+++ +Y  
Sbjct: 2   EFDDAGA-IGRRYRRQDEIGTPYCVTVDFDTLDDNAVTVRERDTMKQERVSLDQIQSYLG 60

Query: 440 HRF 442
            R 
Sbjct: 61  SRL 63


>gi|300121084|emb|CBK21466.2| unnamed protein product [Blastocystis hominis]
          Length = 917

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 60/447 (13%), Positives = 116/447 (25%), Gaps = 58/447 (12%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           LP G +            + + IR    R G +E+  P  +  +    +G+Y    K + 
Sbjct: 449 LPKGTRDFTPEQMAIRHRLFSQIRAVFERHGGVELDTPVFEEKETL--TGKYGEDSKLIY 506

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            LAD+  + +                H  S             K      P     R RE
Sbjct: 507 DLADQGGELLALRYDLTVPFARYLAVHGVSQLK-----RFHIAKVYRRDNPATSKGRFRE 561

Query: 155 FLMKDAYSF--DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--------- 203
           F   D                       Y  +        I  RA    +          
Sbjct: 562 FTQCDLDVAGAYDDMTADADVIAAGIEVYEEVGVGNIAVKINHRALLDGMMEICGVPAGK 621

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSE-----NTDFDDIISLNSIVEQWTAPYAA 258
                  I   D    +    +      +P+E         +   +   ++E+  A    
Sbjct: 622 VRAIGSAIDKLDKEPWEAVRFEMTEKKGLPAEVADRIREFVEIRGTPWEVLERLEA---M 678

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                +   + +L   +R+      +GH+       SL     +      +  +    YG
Sbjct: 679 PCMRSHGAAWAALASMRRLFGYLEAMGHLAKLSFDMSLARGLDYYTGVIYEVVLLDNPYG 738

Query: 319 IGAM--------------------RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
           +G++                      V   I        +    +               
Sbjct: 739 VGSIGAGGRYDKLVGMFSASGKQIPCVGISIGVERVFTILEKKAADEGTLRCAPCDVFVA 798

Query: 359 QVCRDACEK---IYARLSKVGCDVFW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
              ++   +   I   L + G    +      ++  Q   A   G    V+VG + +   
Sbjct: 799 SAGKELAAQRMRIAGMLWRNGIKAEFGYQANPKLQKQLTYALESGVKWIVVVGEEEMKQG 858

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHR 441
           KV +K+  T     + +E V++    +
Sbjct: 859 KVNLKNLQTREEVTIPVESVVDELKKQ 885


>gi|34557793|ref|NP_907608.1| histidyl-tRNA synthetase [Wolinella succinogenes DSM 1740]
 gi|39932011|sp|Q7M8S6|SYH_WOLSU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|34483510|emb|CAE10508.1| HISTIDYL-TRNA SYNTHETASE [Wolinella succinogenes]
          Length = 442

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 64/432 (14%), Positives = 112/432 (25%), Gaps = 46/432 (10%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           LP    A   +   + E     G + +  P L+ A++ V+ G  D   KE+ R  D   +
Sbjct: 19  LPQEAMAKSRLLRTVSEVFEGFGFVPIETPHLEYAEILVKQG-SDEIQKELYRFFDHGGR 77

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +         +      H ++   LPF  Y I   FR E   R    R REF   D   
Sbjct: 78  DVALRFDQTVPLARFISQH-RNALGLPFKRYAIGNVFRGERAQRG---RYREFTQCDFDF 133

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
                 GS                 LG++   +   +  I   +   F V   T +    
Sbjct: 134 IGSESIGSDAEI---IQVIYASLKALGIERFTISMNNRKILNGICDYFGVKEQTSDVLRI 190

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---------E 273
             K              +++              +   +  +E+ F  +           
Sbjct: 191 IDKLDKIGEESVIKELVEELGLSQESARGILGFTSLKQERSSEEFFAKVASYEGLSDSLR 250

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 R +    I              F  A G  +Y  +              + S  
Sbjct: 251 EGMGEMRALYA--ILDTLEMDRACYKINFSIARGLGYYTGIVYETTLDALPSIGSVCSGG 308

Query: 334 DGKGIIWPDSVAPFKISLINIKAH--------------------------DQVCRDACEK 367
               +    S         +I                             ++       K
Sbjct: 309 RYDNLTQSFSKERMSGVGASIGVDRLLAALEELGLLEGRGTSAQVLVACMEESQLAYSYK 368

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  RL  +G          +     A A+  G P   ++G   +    V +K    G ++
Sbjct: 369 VAERLRTLGIKSEVYPEAVKPKRSLAYANSKGHPYVAVIGEDELKQGVVTLKDMQWGDQK 428

Query: 428 D-MSLEEVINYA 438
             +S+E      
Sbjct: 429 PCISIEAAAEIL 440


>gi|149244764|ref|XP_001526925.1| glycyl-tRNA synthetase 1 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146449319|gb|EDK43575.1| glycyl-tRNA synthetase 1 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 652

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 6/142 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              +++   +     G  R++ +V E  +  +       V      +   K      ++ 
Sbjct: 490 EHVREYIPNVIEPSFGIGRILYSVFEHQYWARKDEAERGVLSLPPLVAPTKVLIVPLSNS 549

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              +   +K+   L K       DD G  IG ++A  D LG P  + +  + V D  V +
Sbjct: 550 AELQPMVKKVSTILKKEKIPFKIDDSGASIGKRYARNDELGTPFGITIDFESVQDESVTL 609

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R +  +   S++ V++    
Sbjct: 610 RERDSTKQVRGSIQAVVDAIKD 631



 Score = 46.7 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 24 KLMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQS 76
          +L+ R         I+    G++ + P G    +N+  + R+        +E+    L  
Sbjct: 18 QLLKRRFFYAPSFEIYGGVAGLFDFGPPGCAFQNNIIDVWRKHFILEEEMLEVEATMLTP 77

Query: 77 ADLWVESGRYDSYGKEMLR 95
           D++  SG  D +   M +
Sbjct: 78 HDVFKTSGHVDRFTDWMCK 96


>gi|76788408|ref|YP_330637.1| histidyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|77405121|ref|ZP_00782220.1| histidyl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|77410833|ref|ZP_00787190.1| histidyl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|123601069|sp|Q3JYL6|SYH_STRA1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|76563465|gb|ABA46049.1| histidyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|77163051|gb|EAO74005.1| histidyl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|77176264|gb|EAO79034.1| histidyl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 426

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 64/401 (15%), Positives = 111/401 (27%), Gaps = 23/401 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  +IR    +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVENVIRNLFKQYHYDEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P   Y I   FR E        R REF       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPTKMYYIGSMFRYERPQAG---RLREFHQVGVECFGS 136

Query: 165 LTPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             P     +              +     + LG            I         +  D+
Sbjct: 137 NNPATDVETIAMGHHLFEDLGIKNVKLHLNSLGSPESRQAYRQALIDYLTPIREQLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D   P +    ++  S+ + + E   A + A   + +      + +  
Sbjct: 197 QRRLNENPLRVLDSKEPEDKLAVENAPSILDYLDESSQAHFDAVCHMLDALNIPYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFK--GADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            V         IF F T+       T    G          G         +        
Sbjct: 257 MVRGLDYYNHTIFEFITEI-EDNELTICAGGRYDGLVSYFGGPETPAFGFGLGLERLLLI 315

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
            GK  I         + +  +         A   +   +   G  V  D +G +I +QF 
Sbjct: 316 LGKQGIPLPIENTIDLYIAVLG---SEANLAALDLAQSIRHQGFKVERDYLGRKIKAQFK 372

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            AD     + + +GS  V   +V +K+  T     +S E +
Sbjct: 373 SADTFNAKVIMTLGSSEVDSREVSLKNNQTRQEVKVSFENI 413


>gi|309810164|ref|ZP_07704009.1| histidine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169436|gb|EFO71484.1| histidine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
          Length = 428

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 64/422 (15%), Positives = 126/422 (29%), Gaps = 19/422 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP      D V  I +    +    E+  P  ++ +++  S     D   KEM  
Sbjct: 8   GTVDILPDTSYQWDKVENIAKNFFRKANYQEIRTPMFENYEIFSRSSGESSDVVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   +  +         P+  + I   FR E        R R
Sbjct: 68  FMDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYNVFYIASMFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF      +                   Y    + LG +++        +  
Sbjct: 125 EFHQIGVESFGSDNALADVETIVLAHDLLSTLGIKKYELHINSLGNEAVRTAYRQALVDY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVH 263
               +  +  D+           +D     +     +   +   ++  +   +       
Sbjct: 185 FTPIKDKLSDDSQRRLKTNPLRILDSKDEEDIKFVSNAPRIRDYLDDESKKNFEFIIKTL 244

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           +E   D + ++  V       G IF F     SL  S T     G+ +++     G    
Sbjct: 245 SELKIDYVLDDDLVRGLDYYTGVIFEFMVEDTSLWQSKTTILGGGRYNHLVEEFDGPKTP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E             +         I    +       +I   L K G  V +D
Sbjct: 305 AVGFGIGEERLMLVLKAQNPELLTDSNIDFYITNIGEETITKTVEIARELRKQGLKVQYD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              +++ +QF  AD       + +G + + ++ + IK    G     +++E+ N  +   
Sbjct: 365 VEQKKLKAQFKKADKAKAKYVITLGVQEIEENTLNIKRLSDGESYAFNMDEIAN-VNDLL 423

Query: 443 SN 444
             
Sbjct: 424 QK 425


>gi|239631395|ref|ZP_04674426.1| histidyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239525860|gb|EEQ64861.1| histidyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 427

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 64/403 (15%), Positives = 112/403 (27%), Gaps = 24/403 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V A+ R+   +    E+  P  ++ D++  S     D   KEM    D+ D+ M   
Sbjct: 20  WQQVEAVARKIFAQYQYHEIRTPIFENVDVFSRSAGDTSDIVTKEMYTFKDKGDRMMALR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +         P+  Y +   FR E        R R+F      +F  
Sbjct: 80  PEGTAGVVRAYVENKLYGPEHAKPYKVYYLGPMFRYERPQSG---RQRQFHQIGVEAFGS 136

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
                      +    L       LK +       P      H  +V   T         
Sbjct: 137 DSPVLDAETLALAKQLLEALGAKHLKFVINSLGD-PATRKAFHAALVDYLTPFKDQLSED 195

Query: 226 DFMDFPIPSENT------DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKR 276
             +                  +I++    +  +  P A       + L   L    E   
Sbjct: 196 SKVRLVKNPLRILDSKDKHDQEIVANAPSILDYLTPEAQQHFDRVKTLLQGLGIPFEVDA 255

Query: 277 VSARGIEV--GHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
              RG++     IF             T   A G+ + +     G     +  A+     
Sbjct: 256 TMVRGLDYYNHTIFEVMSDDKVFGGGYTTILAGGRYNGLVEELGGPETPGIGFAMGVERL 315

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                               I   DQ       ++   + + G     D MG +   QF 
Sbjct: 316 MLLMQGELP----TAQPDAYIVTIDQGADQEALQMLTAIRQQGFTGEMDYMGRKPKGQFK 371

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            A+     L + +G    +   V+IK+  TG ++      V+ 
Sbjct: 372 AANKANAKLVLTIGESERAAGTVQIKNMATGDQQAFPQANVLA 414


>gi|288817800|ref|YP_003432147.1| histidyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288787199|dbj|BAI68946.1| histidyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308751398|gb|ADO44881.1| histidyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
          Length = 408

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 59/395 (14%), Positives = 109/395 (27%), Gaps = 22/395 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYG 107
              V+  +R         E+ +P ++  +++  S G   D   KEM    DR  + +   
Sbjct: 21  FRYVSDTVRSLLKLYNFEEIILPVVEYLEVFQRSIGEVTDIVQKEMFVFQDRKGRWLALR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         +  +           +     FR E        R R+F    A  F    
Sbjct: 81  PEGTAGAVRAYIQNRLYALKPYVKLFYEGPMFRYERPQAG---RYRQFHQIGAEVFGTLD 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT-----GETQVF 222
                    M      I  +LG+ +      S             L+D      G     
Sbjct: 138 PQVDAQ---MIEMVHTILTKLGISATI-EINSIGCRVCRPSYKKALSDYLEDVVGHLCDV 193

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
           C       P+   +   +          +           H E L   L     +S    
Sbjct: 194 CLDRKDKNPLRVLDCKVETCKEAVKQAPKMVDYLCQECATHYETLKSYL---DMLSIPYR 250

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHY---VQMGSYGIGAMRVVAAVIESSHDGKGII 339
           E  H+      Y+  +        G                      A+  +    +  +
Sbjct: 251 ENHHLVRGLDYYTKTVFEAVSDELGITIIAGGRYDYLVEEMGGPPTPAIGFAVGIERISM 310

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
               +   +   + I   D    D   ++  +L  +G  V        +  Q  +A+ L 
Sbjct: 311 LVKDLPQEEPLYMVIPFGD--TLDYAFEVIKKLRDMGKRVETSYKKANLKKQLELANKLK 368

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V++G      + + IK+  TG++E +S  E+
Sbjct: 369 ADYVVLIGEDEKRQNTITIKNMHTGMQESISFLEL 403


>gi|260063153|ref|YP_003196233.1| histidyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
 gi|257796362|gb|EAR14033.2| histidyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
          Length = 460

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 63/458 (13%), Positives = 119/458 (25%), Gaps = 68/458 (14%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYG 90
           P G +          +++   IRE+  R G   +  P+ ++ D        E  R     
Sbjct: 8   PKGTRDFSPQEVARRNHIIGAIREQFERFGFQPIETPSFENYDTLMGKYGEEGDRLIFKI 67

Query: 91  KEMLRLADRNDK----------------AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
                   + D                                   H  +  + PF  YQ
Sbjct: 68  LNSGDFLKKADATVLQDKDSAGLTPQIAEKALRYDLTVPFARYVVMHQ-NEIDFPFKRYQ 126

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG----- 189
           IQ  +R +   R    R REF   DA     T    +  + +++          G     
Sbjct: 127 IQPVWRADRPQRG---RFREFYQCDADVVGATGLIQEAEFIQLYDRVFASLGLNGVTIKL 183

Query: 190 -------------------LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                                      +   IG +     +         +  +    D 
Sbjct: 184 NHRKVLSGIAEVIGAADRLTDFTVALDKLDKIGREKVEAEMEEKGISREAIRKAAPLFDL 243

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
              +          L               ++ +      L   K V    +  G  +Y 
Sbjct: 244 SGEASGQLAALRGLLAKSPTGLQG-VEELEELLDLTRQMGLEAGKCVLDVTLARGLNYYT 302

Query: 291 GTKYSLPMSATFK-GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW-----PDSV 344
           GT + +    T + G+ G        +   G   V    I    D   ++          
Sbjct: 303 GTIFEVAAPETVQMGSIGGGGRYDDLTGIFGLRDVSGVGISFGLDRICLVMEELGLFPET 362

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
               + +  I    +  R    ++  RL   G          ++G QF  AD    P  V
Sbjct: 363 LDRALDVFCINFGPEEARS-ALRLVMRLRSRGIRADLYPNDAKVGKQFKYADKRDVPFVV 421

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLE---EVINYAS 439
           ++G + +   +  ++    G ++   L+   +  +  S
Sbjct: 422 LIGDEELRKGEFTVRDMRGGGQQSYPLDAWEDFADTLS 459


>gi|162139387|ref|YP_281288.2| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
 gi|83305880|sp|Q48QS7|SYH_STRPM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
          Length = 426

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 62/417 (14%), Positives = 121/417 (29%), Gaps = 29/417 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++ R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 13  LPEDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 73  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 129

Query: 159 DAYSFDL-TPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG            I       
Sbjct: 130 GVECFGAANPATDVETIAMAYHLFEKLGIKDVTLHLNSLGSPESRSAYRQTLIDYLTPMR 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    +   S+ + + E+  A + A  D+      
Sbjct: 190 DQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVKDMLEALDI 249

Query: 269 DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +   V         IF F     G+  ++     +    G     +   +G G   
Sbjct: 250 PYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               +I         I  +      +   +  +          ++   + + G     D 
Sbjct: 310 ERLLMIIEKQGITLPIETEMDVYLAVLGDSANSK-------ALELVQAIRRQGFTAERDY 362

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+++   ++
Sbjct: 363 LGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQEVEVSFEDMMTNFAN 419


>gi|218887127|ref|YP_002436448.1| histidyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758081|gb|ACL08980.1| histidyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 426

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 59/406 (14%), Positives = 111/406 (27%), Gaps = 37/406 (9%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +    RE   R G  E+  P L+  +L+  S     D   KEM    DR  +++   P  
Sbjct: 38  MENTAREVFGRYGYAELRTPLLERTELFCRSIGTETDVVQKEMYTFPDRKGRSLTLRPEA 97

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +   F    +  +      +     FR E   +    R R+F   +          +
Sbjct: 98  TAGVMRAFIDAGRHAQEPVSKLFTTGPMFRYERPQKG---RMRQFHQINCECLGPQEPQA 154

Query: 171 KHSYNKMFVSYL----------------RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                 M +++L                    R   ++             L  +     
Sbjct: 155 DAELVLMLMTFLRELGLTDLSLQVNSLGCRECRPVYRAALRDFLDSIDRESLCEDCRRRI 214

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
           DT   +V   K      + +E     D           T      +      L   L   
Sbjct: 215 DTNPLRVLDCKVPTCRELTAEAPRIIDHNCPECRSHFDTVLRVFDAAQLPYVLTPRLVRG 274

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                R          G + S+     + G   +     +   G        A++  + +
Sbjct: 275 LDYYNRTTFEVVSGSIGAQSSVAGGGRYDGLVAQLGGPDVPGVGFACGMERLALMMPALE 334

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDDMGEQIGSQF 392
            K   +  +V     +   +                 L   G   +V +   G + G Q 
Sbjct: 335 KKRPDFYIAVLDPAAADAAMLLA------------QELRAAGKAGEVSFAARGIK-G-QM 380

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             A   G    +++G   +++  V IK   +G +  +   E  N+ 
Sbjct: 381 RQAGRTGARCTLLLGGDEMANGTVVIKDMDSGEQRSVPQGEAANHV 426


>gi|169629956|ref|YP_001703605.1| histidyl-tRNA synthetase [Mycobacterium abscessus ATCC 19977]
 gi|169241923|emb|CAM62951.1| Histidyl-tRNA synthetase [Mycobacterium abscessus]
          Length = 424

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 129/426 (30%), Gaps = 31/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           GI  ++P        V   + E+    G   + +P  +   L+        D   KEM  
Sbjct: 11  GIPDYVPPDSAQFLAVRDGLLEQARLAGYGYIELPVFEDTGLFARGVGESTDVVSKEMYT 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR D+++   P     +      H      LP         FR E RP+ G  R  + 
Sbjct: 71  FADRGDRSVTLRPEGTASVMRAVIEHGLDRGQLPAKLRYAGPFFRYE-RPQAGRYRQLQ- 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFIVL 213
            +         P             Y  +        I     A   P   +L  EF+  
Sbjct: 129 QVGVEAIGVDDPALDAEVIAIADAGYRSLGLTGFRLEISSLGDASCRPQYRELLQEFLFG 188

Query: 214 AD----TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF- 268
            D    T E         +D   P       +   +   +      +      H + L  
Sbjct: 189 LDLDEATRERARINPIRVLDDKRPEVREMTANAPLMLDHLSGEAKAHFEQVLSHLDALGV 248

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGK--DHYVQMGSYGIGA 321
             +   + V          F       G +  +     + G   +     +    +G+G 
Sbjct: 249 QYVVNPRLVRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQSLSGIGFGLGV 308

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF- 380
            R V A+             +      +  + +    Q  +    K+ A+L   G     
Sbjct: 309 DRTVLALRAEGVTVGDSGRCE------VFCVPLG---QDAKSVLVKVAAQLRGAGIRTDI 359

Query: 381 -WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            + D G + G+    AD  G  + ++ G + + +  +E+K    G+++ + +  ++   +
Sbjct: 360 AYGDRGLK-GAM-RGADRSGASIALVAGDREIGEGNIELKTLADGVQQPVPIGSIVGEVT 417

Query: 440 HRFSNN 445
            R ++ 
Sbjct: 418 ARLASR 423


>gi|307179331|gb|EFN67695.1| Glycyl-tRNA synthetase [Camponotus floridanus]
          Length = 742

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/415 (13%), Positives = 124/415 (29%), Gaps = 77/415 (18%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R    +   LPF   QI   FR+E+ PR G++R REF M +   F
Sbjct: 303 FLRPETAQGIFVNFKRLLAFNQERLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHF 362

Query: 164 DLTPEGSKHSYNKMFVS----YLRIFHRLGLKSIPMRA-----------ESGPIGGDLSH 208
               + S   +  +       Y       G+++  +             E+        +
Sbjct: 363 CDPSDKSHPKFKTVEDISMLLYSACNQMDGIRAQDITIGDAVSTGLVANETLGYYMARIY 422

Query: 209 EFIVLADTGETQVFCSKDFM-DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
           +F+V      +++   +    +    + +    + ++    VE       +  D+     
Sbjct: 423 QFLVKIGVDSSRLRFRQHMSTEMAHYASDCWDAECLTSYGWVECVGCADRSAYDLRQHTE 482

Query: 268 FDSLP---ENKRVSARGIE----------VGHIFYFGTKYSLPMSAT-----------FK 303
              +    E K  + + ++          +G  F   +K  L M A              
Sbjct: 483 ATGVKLVAEKKLPAPKTVDVCEIVPDKVLIGKTFKQYSKAILDMLAKLSEDEIVALEKVL 542

Query: 304 GADGKDHYVQMGS------------------------------YGIGAMRVVAAVIESSH 333
              G+                                         G  R++  + E + 
Sbjct: 543 TESGEKTLELPNHTSVQITKAMIEVKRYQKTVHVEEIIPSVIEPSFGIGRIMYTLFEHNF 602

Query: 334 DGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
             +      +       +  +K      + ++      +K+   L+K       DD    
Sbjct: 603 KARKDDEKRTYFSLPSVIAPLKCAVLPLSGNEEFVPFVKKLSQDLTKAEVSHKVDDSSGS 662

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVS-DSKVEIKHRLTGIREDMSLEEVINYASHR 441
           IG ++A  D +  P  + +    +       ++ R +  +  ++L+E+ +     
Sbjct: 663 IGRRYARTDEIAIPFGITIDFDSLKVPHSATLRDRDSMEQVRINLDELPDVVRDL 717



 Score = 45.9 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 17/90 (18%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIR------EEQNRTGAIEMSVP 72
           L+ R   + Q         G Y + P+G     N+  + R      E+      +E+   
Sbjct: 135 LLKRRFYLDQSFAIYGGITGQYDFGPMGCSLKTNLINVWRNFFVLEEQM-----LEVDCS 189

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDK 102
            L    +   SG  D +   M++     + 
Sbjct: 190 ILTPEPVLKASGHVDRFADVMVKDMKTGEC 219


>gi|254373563|ref|ZP_04989050.1| hypothetical protein FTCG_01519 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151571288|gb|EDN36942.1| hypothetical protein FTCG_01519 [Francisella novicida GA99-3549]
          Length = 421

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 55/412 (13%), Positives = 118/412 (28%), Gaps = 22/412 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LPL       + + ++   +R    E  +P ++ ++L+  S     D   KE     DRN
Sbjct: 14  LPLDSYKWQFLESKVKLILDRYNYSETRLPIVERSELFHRSVGESSDIVSKETYDFQDRN 73

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P        +   +  + R      +     FR E   +    R R+F     
Sbjct: 74  GDSLTLRPEGTAGCVRMVIENNLATRGQTQKLWYCGPMFRYERPQKG---RYRQFYQLGV 130

Query: 161 YSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT--G 217
            ++               +  +  +     +        S     + +   +        
Sbjct: 131 EAYGFDGIAIDLEVIAIAWSLFKELGISEYVTLELNSLGSSLNRQEYTQALLQYLKPYHA 190

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP----- 272
           E      K     P+   ++  +    + +   +          +  ++    L      
Sbjct: 191 ELDEDSIKRLDKNPLRILDSKIEKTQKILANAPKLIDFIDHDLRLRFKQTCQYLDALGVR 250

Query: 273 ---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                  V       G +F + T      SA   G         +G     A+     + 
Sbjct: 251 YKLNENLVRGLDYYTGLVFEWTTDKLGSQSAICAGGRYDALVENLGGQKTAAIGFAIGME 310

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC--EKIYARLSKVGCDVFWDDMGEQ 387
                 + +    +       +  I    ++ +     E I   L ++  D   D     
Sbjct: 311 RLLLLLEDLGKLPNQDNT-CDVFFILDSAELHQSLAIVENIRQELPQLKID--MDLKFGS 367

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYA 438
             SQF  AD  G  + +I+G   + +    IK       ++ ++  E+IN+ 
Sbjct: 368 FKSQFKKADKSGAKVAIIIGQDELDNGFAGIKFLQQNEEQQQVAFNELINFL 419


>gi|114053191|ref|NP_001040293.1| glycyl-tRNA synthetase [Bombyx mori]
 gi|87248659|gb|ABD36382.1| glycyl-tRNA synthetase [Bombyx mori]
          Length = 732

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 60/417 (14%), Positives = 123/417 (29%), Gaps = 75/417 (17%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + ++ +  R    +   LPF   QI   FR+E+ PR G++R REF M +   F
Sbjct: 293 FLRPETAQGILVNFKRLLEFNQGRLPFAAAQIGNSFRNEISPRSGLLRVREFTMCEIEHF 352

Query: 164 DLTPEGSKHSYNKMFVS--YLRIFHRLGLKSIPMRA-----------ESGPIGGDLSHEF 210
               E  K    K      Y       G  +                E+        H +
Sbjct: 353 CDVKEHPKFESVKNTQMLLYSADNQEQGKPAELTTIGDAVSKGIVNNETLGYFMARIHMY 412

Query: 211 IVLADTGETQVFCSKDF-MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           ++       ++   +    +    + +    + +S    +E       +  D+       
Sbjct: 413 MLAVGIDPKRLRFRQHMGNEMAHYACDCWDAECLSSYGWIECVGCADRSAYDLTQHTKAT 472

Query: 270 SL---PENKRVSARGIE----------VGHIFYFGTKYSLPMSATFKGADGKDHY----- 311
            +    E K  + + IE          +G  F   ++      AT   A  ++       
Sbjct: 473 GIRLAAEKKLPAPKQIEVVEAIANKAAIGKAFKKDSQAINDTLATLDNAALEEMQKELDS 532

Query: 312 -----------------------------------VQMGSYGIGAMRVVAAVIESSHDGK 336
                                                +     G  R++  ++E +   +
Sbjct: 533 NGEYTLITARGEFKLTPSLVNVKKTQKTIHVEEIIPSVIEPSFGVGRILYCILEHNFRMR 592

Query: 337 GIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                 +      ++  +K      + +   +     +   L  V      DD    IG 
Sbjct: 593 EGDEQRTYFSLPPTVAPMKCVVLPLSGNAEFQPFVRDLSQELITVDVSHKVDDSSGSIGR 652

Query: 391 QFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++A  D LG P  V V    + +   V ++ R +  +  + + +V        SN++
Sbjct: 653 RYARTDELGVPYAVTVDFDTIKEPHTVTLRERDSMRQVRLPMADVPTVVRD-LSNSK 708


>gi|157877289|ref|XP_001686967.1| glycyl tRNA synthetase [Leishmania major strain Friedlin]
 gi|68130042|emb|CAJ09350.1| putative glycyl tRNA synthetase [Leishmania major strain Friedlin]
          Length = 628

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 12/152 (7%)

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK----------A 356
           G  +   +     G  R++  ++E S+  +      +      S   +            
Sbjct: 461 GYSYTPSVIEPSFGIGRILYCLLEQSYWVRRDDGGKNDKRAVFSFSPLLAPQKVALLPLM 520

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                     +I   L   G  V  DD    IG ++A  D LG P  +    +   D  V
Sbjct: 521 VKPELLATISEIRQELVMRGISVRVDDSSVTIGKKYARVDELGIPFAITCDFEG--DGSV 578

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
            ++ R T  +  +   EV +      +  +P+
Sbjct: 579 TLRERDTASQVRVPKLEVASVVVDLCNPLQPL 610



 Score = 44.3 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 33/124 (26%), Gaps = 9/124 (7%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y   P       N+    R+         E+    L   +++  SG    +   M+R
Sbjct: 40  AGLYDLGPTMCAMKSNMLHFWRQHFVIEESMCEVDTTCLTPEEVFKASGHVTRFNDVMVR 99

Query: 96  LA--------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
                     D+  +        ++ +T   +       +        Q+K   E     
Sbjct: 100 DTVTGECIRADKFLEEWSEAQLEKDGITAEQKDEFLHLLHDAAGMNPPQIKAVLEKHAIK 159

Query: 148 GVMR 151
               
Sbjct: 160 SPKG 163


>gi|325672605|ref|ZP_08152301.1| histidine--tRNA ligase [Rhodococcus equi ATCC 33707]
 gi|325556482|gb|EGD26148.1| histidine--tRNA ligase [Rhodococcus equi ATCC 33707]
          Length = 426

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 120/400 (30%), Gaps = 33/400 (8%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   + +P  +   L+        D   KEM   ADR ++++   P     +      H
Sbjct: 40  AGYGHIELPIFEDTGLFARGVGESTDVVSKEMYTFADRGERSVTLRPEGTAGVMRAVIEH 99

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                 LP         FR E RP+ G  R  +  +         P             +
Sbjct: 100 GLDRGQLPVKLSYAGPFFRYE-RPQAGRYRQLQ-QVGVEAIGVDDPALDAEVIAIADAGF 157

Query: 182 LRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVFCSK----DFMDFPIPSE 235
             +        I    +    P   +   EF+   D  E     ++      +D   P  
Sbjct: 158 RSLGLDGFRLEITSLGDDTCRPQYRERLQEFLFGLDLDEDTRRRAEINPLRVLDDKRPHV 217

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFY---- 289
                D   +   + +    +      H + L      N R+  RG++      F     
Sbjct: 218 REMTADAPLMLDHLSESAKAHFDEVLAHLDALGVPYVVNPRM-VRGLDYYTKTTFEFVHD 276

Query: 290 -FGTKYSLPMSATFKGADGK--DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
             G +  +     + G   +     +    YG+G  R + A+              +   
Sbjct: 277 GLGAQSGIGGGGRYDGLMAQLGGQPLSGIGYGLGVDRTILALAAEGKSAG----NPARCE 332

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQV 404
                +   A  ++      KI   L   G      + D G + GS    AD  G  + +
Sbjct: 333 VFGVPLGAAAKTEMV-----KIAHALRAAGIRADMVYGDRGIK-GSM-KAADRSGARIAL 385

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           ++G + ++   + +K    G +  +++E V+       ++
Sbjct: 386 VLGDEDLAAGTIAVKDLSNGEQTSVAMEGVVAQIGSILAD 425


>gi|257419652|ref|ZP_05596646.1| histidyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257161480|gb|EEU91440.1| histidyl-tRNA synthetase [Enterococcus faecalis T11]
          Length = 433

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/394 (13%), Positives = 107/394 (27%), Gaps = 11/394 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQFVEETARLIFKDYQYQEIRTPIFEHYEVISRSVGDTTDIVSKEMYDFYDKGDRHVTLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  +         P+  Y +   FR E      + +  +  ++   S + 
Sbjct: 80  PEGTAPIVRAFVENKLYGPEYTKPYKTYYMGPMFRYERPQAGRLRQFHQIGVEAFGSENP 139

Query: 166 ------TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                                   + + LG K          I     H   +  D+   
Sbjct: 140 ALDVEIMAMALDFFKQLGIQQIKLVINSLGDKETRATYRQALIDYLEPHMAELSEDSQRR 199

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                   +D     +     +  S+ + + E   A + A +D+ +        ++  V 
Sbjct: 200 LHENPLRVLDSKDKKDKVIVAEAPSILDYLNEPSKAHFEAVTDMLDLLEIPYEIDSNMVR 259

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                   IF   ++     + +   A G+ + +     G         +          
Sbjct: 260 GLDYYTHTIFEIMSEAPKMGAQSTICAGGRYNGLVEELGGPDTPGFGFGMGIERVLLTME 319

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +         +         A  ++   +   G     D M  +  +QF  AD L
Sbjct: 320 AEEVVIPALSELDAYVVGIGSDTNVAALQLVQSIRNFGFSADRDYMNRKPKAQFKTADKL 379

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              L + +G   +++  V +K   T   +   L 
Sbjct: 380 QAKLVLTIGENELNEGIVNVKSMATREEKAFPLS 413


>gi|300707071|ref|XP_002995759.1| hypothetical protein NCER_101261 [Nosema ceranae BRL01]
 gi|239604969|gb|EEQ82088.1| hypothetical protein NCER_101261 [Nosema ceranae BRL01]
          Length = 587

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 80/284 (28%), Gaps = 13/284 (4%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI- 232
            +   + + +              +          E + +AD     + C        + 
Sbjct: 292 IDSTLIRFRQHKKDEMAHYAKDCWDCEIYSSFGWVECVGIADRSAYDLTCHSQASGTELC 351

Query: 233 -------PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                  P    +   II   S ++     Y   S+  N      + +N         + 
Sbjct: 352 FSEKCIPPVIKEELKPIIDKKSWIKILKKDYEQFSNELNSLSSKFIQDNMFKENDKFYIN 411

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP---- 341
            +F   +               +     +     G  R++  ++E S   +    P    
Sbjct: 412 FVFNENSYKIECSQIR-TTIHEQKDIPDVIEPSFGIGRILYILLEHSFYLRECGRPVLQL 470

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
                    +I+    + V       I  +L         ++    IG ++A  D +G P
Sbjct: 471 KPKIASTKVIISYVVQNAVFTSYINNILDQLYDYNIVAEVNERSCSIGKKYASCDEIGIP 530

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             V   +  + D KV I+ R +  +  +++ +V     +  +  
Sbjct: 531 YFVTFDNDSLVDKKVTIRERDSMEQVRLNISDVSGIICNLINEK 574



 Score = 38.6 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 2/89 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y   P+      N  +  R+         E+    L    +   SG  D +   ++ 
Sbjct: 30  SGLYDIGPVLFGIKQNFTSEWRKHFVYYDKLYEVESSILLPYSVLKASGHVDKFCDILIC 89

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
               N  +       E  ++ +  S   S
Sbjct: 90  DK-NNGLSYRADHYIEAFLSKLPHSDEIS 117


>gi|300173446|ref|YP_003772612.1| histidyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887825|emb|CBL91793.1| histidyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
          Length = 432

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 114/421 (27%), Gaps = 15/421 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP       +V +  R         E+  P  ++ D++  S     D   KEM  
Sbjct: 11  GTADLLPDNTLQWQHVESTARLLFGDYNFKEIRTPLFENFDVFSRSAGDTSDVVTKEMYD 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   +  +         P+  Y +   FR E        +  
Sbjct: 71  FHDKGDRHIALRPEGTAGVVRAYVENKLFGPEFDKPYKVYYMGPMFRYERPQAGRFRQFH 130

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--------IGGD 205
           +  ++   S   +P             +  +  +    +I    +           I   
Sbjct: 131 QIGVEAFGS--KSPALDVEIIAMAVDLFQTLGLKNLKVAINTLGDKSSRVAYRQALIDYL 188

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHN 264
             H   +  D+           +D   P +     D  S+ + + E+ T  +     +  
Sbjct: 189 KPHFNELSTDSQNRLEQNPLRVLDSKDPRDKIFVADAPSILDYLSEEATKHWQQVQTMLR 248

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
               +   +   V         IF   T       A      G+   +     G     V
Sbjct: 249 ALNINYDIDATMVRGLDYYNDTIFEIMTIDDNLKGAATIAGGGRYSGLVAEFGGPETPGV 308

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +      G       +          +            +    +   G     D +
Sbjct: 309 GFGIGMERLIGLLNAQNSAPIVDDKLDFYVVNIGDGTDVVAMQTVQAIRSFGYVAERDYL 368

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           G    +QF  AD       V +G + + ++   +K   TG ++ + L ++        ++
Sbjct: 369 GRSAKAQFKSADRNHSKYVVTIGDQELVNNTANVKDMATGYQQTVKLADLYTNLPTIIAS 428

Query: 445 N 445
            
Sbjct: 429 K 429


>gi|325108678|ref|YP_004269746.1| histidyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305]
 gi|324968946|gb|ADY59724.1| histidyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305]
          Length = 441

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 129/442 (29%), Gaps = 51/442 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   +LP        +  + R      G   +  P L+  ++ +  G  D   K+M R  
Sbjct: 12  GFRDFLPEKMIPRQELIQVARSVYASYGFSPIDTPALEYTEILLGKG-GDETDKQMFRFT 70

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D+ D+ +                H+      PF  Y I   +R E   R    R REFL 
Sbjct: 71  DQGDRDVAMRFDLTIPFARFAAQHV-PQLGTPFKRYHIAPVWRGERPARG---RFREFLQ 126

Query: 158 KDAY----------------SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
            D                    DL  +     +         +   L    +  +A    
Sbjct: 127 CDFDTIGTDSLAADIETALVIHDLLDQIGLGEFTIHINHRQLLNGLLEELGLLEQAVPLL 186

Query: 202 IGGDL---SHEFIVLADTGE---------TQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              D      E  V+ + GE          +V         P        + +       
Sbjct: 187 RALDKLPKIGEEAVVKEMGEAAGVPADKAKRVLGLAALKGEPSSVLEQAAEHVKGSERGQ 246

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFY-----FGTKYSLPMSATF 302
           E   A    T       +  S        ARG++   G IF           S+     +
Sbjct: 247 EALGALRQLTECCAEVGVAGSRLHLDLSIARGLDYYTGTIFETFLTDLPGIGSVCSGGRY 306

Query: 303 KGADGKDHYVQMGSYG--IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               G     ++   G  +G  R++AA+ E            S       ++  +     
Sbjct: 307 DNLAGLFTKQKLPGVGASLGLDRLLAAMEELG--------RLSDVGTTSQVLIPQFDSDR 358

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
             D  +K+  RL   G         + +G Q   AD    PL VI G+   +    ++K+
Sbjct: 359 LADY-QKLSRRLHAAGIASEVYPESKALGKQLKYADKKKIPLAVIAGADEFAAGNWQLKN 417

Query: 421 RLTGIREDMSLEEVINYASHRF 442
              G +E ++  +++     + 
Sbjct: 418 LQAGSQETVADADIVEVIQQQL 439


>gi|309803244|ref|ZP_07697341.1| histidine--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|312875673|ref|ZP_07735674.1| histidine--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
 gi|329920142|ref|ZP_08276973.1| histidine--tRNA ligase [Lactobacillus iners SPIN 1401G]
 gi|308164752|gb|EFO67002.1| histidine--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|311088927|gb|EFQ47370.1| histidine--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
 gi|328936596|gb|EGG33040.1| histidine--tRNA ligase [Lactobacillus iners SPIN 1401G]
          Length = 428

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 64/422 (15%), Positives = 126/422 (29%), Gaps = 19/422 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP      D V  I +    +    E+  P  ++ +++  S     D   KEM  
Sbjct: 8   GTVDILPDTSYQWDKVENIAKNFFRKANYQEIRTPMFENYEIFSRSSGESSDVVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   +  +         P+  + I   FR E        R R
Sbjct: 68  FMDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYNVFYIASMFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF      +                   Y    + LG +++        +  
Sbjct: 125 EFHQIGVESFGSDNALADVETIVLAHDLLSTLGIKKYELHINSLGNEAVRTAYRQALVDY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVH 263
               +  +  D+           +D     +     +   +   ++  +   +       
Sbjct: 185 FTPIKDKLSDDSQRRLKTNPLRILDSKDEEDIEFVSNAPRIRDYLDDESKKNFEFIIKTL 244

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           +E   D + ++  V       G IF F     SL  S T     G+ +++     G    
Sbjct: 245 SELKIDYVLDDDLVRGLDYYTGVIFEFMVEDTSLWQSKTTILGGGRYNHLVEEFDGPKTP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E             +         I    +       +I   L K G  V +D
Sbjct: 305 AVGFGIGEERLMLVLKAQNPELLTDSNIDFYITNIGEETITKTVEIARELRKQGLKVQYD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              +++ +QF  AD       + +G + + ++ + IK    G     +++E+ N  +   
Sbjct: 365 VEQKKLKAQFKKADKAKAKYVITLGVQEIEENTLNIKRLSDGESYAFNMDEIAN-VNDLL 423

Query: 443 SN 444
             
Sbjct: 424 QK 425


>gi|227552625|ref|ZP_03982674.1| histidine--tRNA ligase [Enterococcus faecium TX1330]
 gi|257896962|ref|ZP_05676615.1| histidyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|293378682|ref|ZP_06624841.1| histidine--tRNA ligase [Enterococcus faecium PC4.1]
 gi|227178251|gb|EEI59223.1| histidine--tRNA ligase [Enterococcus faecium TX1330]
 gi|257833527|gb|EEV59948.1| histidyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|292642722|gb|EFF60873.1| histidine--tRNA ligase [Enterococcus faecium PC4.1]
          Length = 430

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/403 (12%), Positives = 111/403 (27%), Gaps = 13/403 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         E+  P  +  ++   S     D   KEM    D+ ++ +   
Sbjct: 20  WQFVEETARLLFRDYQYNEIRTPIFEHYEVISRSVGDTTDIVSKEMYDFYDKGERHVTLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  H         PF  + +   FR E   +  + +  +  ++   S + 
Sbjct: 80  PEGTAPIVRSFVEHKLFGPEYAKPFKTFYMGPMFRYERPQKGRLRQFHQIGVEAFGSENP 139

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             +         F   L I     + +     ++         ++++  +  E      +
Sbjct: 140 ATDVESMVMALDFFKQLGITQIRLVINSLGDKDTRQAYRQALIDYLLPFE-AELSEDSKR 198

Query: 226 DFMDFPIP--------SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
              + P+          +    D    L+ + E     +     + +        ++  V
Sbjct: 199 RLHENPLRVLDSKDKRDQKFVADAPSILDYLSEPAQKHFDTVVSMLDALAVPYEIDSNMV 258

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                    IF   +      +     A G+   +     G        A+         
Sbjct: 259 RGLDYYTHTIFEIMSDAPKMGAQATICAGGRYDNLVEELGGPSTPGFGFAMGIERLLLTM 318

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                 +  F      + A          K+   +   G     D M  +  +QF  AD 
Sbjct: 319 EAEEVVIPAFNELDAYVVALGDETNIEALKVVQAIRNFGFSADRDFMNRKAKAQFKTADK 378

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
               L +++G   ++   + +K   +   +   LEE+  +   
Sbjct: 379 ANAKLVLVIGEDELASQTINVKAMASRKEKSFPLEEIYEHFDE 421


>gi|134098606|ref|YP_001104267.1| histidyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|291008197|ref|ZP_06566170.1| histidyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|166228608|sp|A4FBB7|SYH_SACEN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|133911229|emb|CAM01342.1| histidyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
          Length = 420

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 61/415 (14%), Positives = 113/415 (27%), Gaps = 13/415 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           GI  + P    A   V   + +   R G   + +P  +   L+        D   KEM  
Sbjct: 9   GIPEYFPPESAAFLAVRETLADAARRAGYGYIELPLFEDTTLFARGVGESTDVVSKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR  +++   P     +T     +      LP   Y     FR E        R R+ 
Sbjct: 69  FADRGGRSVTLRPEGTAGVTRSVIENGLDRGQLPVKLYYSGAFFRYERPQAG---RYRQL 125

Query: 156 LMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFI- 211
                       P             Y R+        +    +    P       EF+ 
Sbjct: 126 QQLGVEAIGVDDPALDAEVIAIADEGYRRLGLTGYRIELTSLGDETCRPSYRAKLQEFLR 185

Query: 212 ---VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
              +  DT +         +D   P       D   +   +      +      H   L 
Sbjct: 186 GLPLDEDTRKRAELNPLRVLDDKRPEVRELLADAPLMVDHLSVEAKEHYEQVKTHLSDLG 245

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
            +  EN R+  RG++      F   +    + +  G  G+   +     G     V   +
Sbjct: 246 VAFTENPRL-VRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMAELGGQELSGVGFGL 304

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                         +V       +      +  +     I   L   G        G+ +
Sbjct: 305 GVDRTLLACQAEGLAVGDQARCDVYCVPLGEAAKRRLVTIAGGLRGAGVRADVAYGGKSL 364

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                 AD  G    +++G + +     ++K   +G +  + L++ +        
Sbjct: 365 KGAMKGADRSGARFALVLGERDLEAGSAQLKDLASGEQRPVPLDDAVAAVREALQ 419


>gi|89889784|ref|ZP_01201295.1| glycine--tRNA ligase [Flavobacteria bacterium BBFL7]
 gi|89518057|gb|EAS20713.1| glycine--tRNA ligase [Flavobacteria bacterium BBFL7]
          Length = 515

 Score = 80.6 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 93/268 (34%), Gaps = 17/268 (6%)

Query: 187 RLGLKSIPMRAESGPIGGDLSHEFIVLADTGET--QVFCSKDFMDFPIPSENTDFDDIIS 244
           + G            I      E + +    +   ++   + + +  +   N+      +
Sbjct: 246 QTGKAFRNEIVARQFIFRQREFEQMEMQYFVKPGTELEWFEIWKERRMAWHNSLGMGAEN 305

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                 +  A YA  +            E + + +R            ++S      F  
Sbjct: 306 YRFHDHEKLAHYANAATDIEFDFPFGFKELEGIHSRTDFDLKAHE---EHSGKKLQFFDH 362

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAV---------IESSHDGKGIIWPDSVAPFKISLINIK 355
            + K++   +    IG  R+  AV         +E+  +   +  P  +AP K +++ + 
Sbjct: 363 EENKNYVPYVLETSIGLDRMFLAVFSNSLVDEKLENGGERTVLKLPAVLAPVKAAILPLL 422

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             D    +   +I   L      V +++    IG ++A  DL G P  V +      D  
Sbjct: 423 KKD-GLPEIANEIIDELK-WSMKVAYEEKD-SIGKRYARHDLNGTPYCVTIDHDTKEDHA 479

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRFS 443
           V ++ R T  +E ++++++ NY   R S
Sbjct: 480 VTVRDRDTMNQERVAIKDLKNYLESRVS 507


>gi|157165317|ref|YP_001466859.1| histidyl-tRNA synthetase [Campylobacter concisus 13826]
 gi|166227955|sp|A7ZDK1|SYH_CAMC1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|112801287|gb|EAT98631.1| histidyl-tRNA synthetase [Campylobacter concisus 13826]
          Length = 408

 Score = 80.6 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 63/411 (15%), Positives = 118/411 (28%), Gaps = 20/411 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP   K    +     E     G  ++  P L+   L+  S     D  GKEM +
Sbjct: 7   GMKDMLPARAKLYAQIIKTCEEVAKNYGYEQILTPHLEETALFKRSVGESSDIVGKEMYQ 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+    +   P     +   F        N+    +     FR E   +    R REF
Sbjct: 67  FEDKGGNDVCLRPEGTAGVVRAFIEAKLDRANVTKRCFYHGSMFRYERPQKG---RLREF 123

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--EFIVL 213
                  F         S   M        +      I    +   +        +F+  
Sbjct: 124 HQFGCECFGEGSVYEDASIILMVSEIFNRLNIKTTLKINSLGDESSMKSYKEKLVKFLDE 183

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP- 272
            D    +  C +  +  PI   +   +    +       T   +  +     KL + L  
Sbjct: 184 NDDKICED-CKRRKLLNPIRVLDCKIESCQEIYKNAPVITDSLSDEAQADFAKLQEILTA 242

Query: 273 -----ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                E      RG++      F    +   S +     G+   +     G  +  V  A
Sbjct: 243 NGVKFEIDTKLVRGLDYYCKTAFEFISNEIGSQSAVAGGGRYDRLVEYLGGRASYGVGFA 302

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +             D      +  +     D    D    + ++L K    V      ++
Sbjct: 303 MGVERIMEILGEAGDERDGVYLCAL-----DAANVDFIYNLGSKLRKK-YQVEISYEAKK 356

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           +      AD     + + VG   + ++K+  K+  T   + ++L+E+    
Sbjct: 357 LQKHLQNADNKNAKIFLCVGENEMKENKIWYKNLETKDEKTINLDELEKEL 407


>gi|34498992|ref|NP_903207.1| histidyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
 gi|39932055|sp|Q7NS89|SYH_CHRVO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|34104842|gb|AAQ61199.1| histidyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
          Length = 423

 Score = 80.6 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 57/412 (13%), Positives = 110/412 (26%), Gaps = 28/412 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYG 107
            +     +R+     G   +  P ++   L+V S G   D   KEM    D  +   +  
Sbjct: 22  WEYFEEALRKLLADYGYQNIRTPIVEGTPLFVRSIGEVTDIVEKEMYTFVDSLNGDSLTL 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSF 163
                  T           N     + +   +R E       R       E L       
Sbjct: 82  RPEGTAGTLRAVVEHNLLYNATPKLWYMGPMYRHERPQKGRYRQFHQVGVEALGLAGPDI 141

Query: 164 DLTPEGSKHSYNKM--FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           D           +      Y+R+       +    A    +   L     +L + G+ ++
Sbjct: 142 DAEIIAMTADLWRRLGISQYVRLEINSLGNAEERAAHREALIAYLERHVDILDEDGKRRM 201

Query: 222 FCSK-DFMDFPIPSENTDFDDIISLNSIV--------EQWTAPYAATSDVHNEKLFDSLP 272
             +    +D   P+     +    L+  +        E W A  AA    + E     L 
Sbjct: 202 HTNPLRVLDTKNPALQEMANAAPKLSDYLGEESRAHYEGWKAMIAALGIEYIEN--PRLV 259

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  R +        G + ++     + G   +         G G       ++   
Sbjct: 260 RGLDYYNRSVFEWVTSELGAQGTICAGGRYDGLIEQLGGKAASGIGFGMGMERVLLLLQD 319

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                              + +    +       K+   L   G  V          SQ 
Sbjct: 320 KGLLPAQRS--------VDVFLVNQGEGAGLYSMKLAQTLRAAGYSVVQHLGEASFKSQM 371

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHRFS 443
             AD  G    +IVG   +   +V +K  R    ++ ++ + V+   +   +
Sbjct: 372 KKADGSGAEFALIVGENEIQAGQVVVKALRADVAQQTVAADAVLATLATLKA 423


>gi|134295842|ref|YP_001119577.1| histidyl-tRNA synthetase [Burkholderia vietnamiensis G4]
 gi|166227953|sp|A4JEN9|SYH_BURVG RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|134138999|gb|ABO54742.1| histidyl-tRNA synthetase [Burkholderia vietnamiensis G4]
          Length = 446

 Score = 80.6 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 58/439 (13%), Positives = 108/439 (24%), Gaps = 41/439 (9%)

Query: 32  IHQHS--KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-D 87
           I + +  KG+   LP      +   A ++      G   +  P ++   L+    G   D
Sbjct: 8   IEKLAGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTQLFTRGIGEVTD 67

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
              KEM    D  +   +                     + P   + I   FR E   R 
Sbjct: 68  IVEKEMYSFTDALNGENLTMRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRG 127

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
              R R+F      +       +      M           G+K                
Sbjct: 128 ---RYRQFHQVGVEALGFAGPDADAEIIMMCQRLWDDLGLTGIKLEINSLGLAEERAAHR 184

Query: 208 HEFIVLADTGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
            E I   +     +     +     P+   +T    +  +     +        S  H E
Sbjct: 185 VELIKYLEQHVDVLDEDAKRRLYTNPLRVLDTKNPALQEIAQNAPKLIDFLGDESRAHFE 244

Query: 266 -------------KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                        K+   L          +        G + ++     +     +    
Sbjct: 245 GLQRLLLANNIPFKINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGK 304

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
              + G          +    D         V              +  R+       RL
Sbjct: 305 PTAACGWAMGIERILELLKEEDLAPEQEGVDVYVVHQG--------EAAREQAFIAAERL 356

Query: 373 SKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT----- 423
              G DV +    D       SQ   AD  G    VI G + V++    +K         
Sbjct: 357 RDTGLDVIFHCSADGAPASFKSQMKRADASGAAFAVIFGEEEVANGTAGVKALRGAGQEG 416

Query: 424 --GIREDMSLEEVINYASH 440
              +++ + +E +  +  +
Sbjct: 417 EKNVQQTVPVEGLTEFLIN 435


>gi|225021317|ref|ZP_03710509.1| hypothetical protein CORMATOL_01336 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946050|gb|EEG27259.1| hypothetical protein CORMATOL_01336 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 426

 Score = 80.2 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 58/417 (13%), Positives = 116/417 (27%), Gaps = 27/417 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+  ++P        V           G   + +P  +   L+        D   KEM  
Sbjct: 14  GVPDYVPPNSAQFIAVRDTFAHHIRLAGYEHIELPIFEDTTLFARGVGESTDVVSKEMYT 73

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR  +++   P     +      H      LP         FR E RP+ G  R  + 
Sbjct: 74  FADRGGRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLGYYGPFFRYE-RPQAGRYRQLQ- 131

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFI-- 211
            +         P             +  I  +     +    +    P   +   EF+  
Sbjct: 132 QVGVEAIGVDDPTLDAEVIALANRCFSSIGLKDYRLELTSLGDATCRPAYREKLQEFLLK 191

Query: 212 ---VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                A     ++   +   D     +    D  + L+ +  Q    + A +   ++   
Sbjct: 192 LPLDDATRHRAEINPLRVLDDKRPEVQELTADAPLMLDYLSPQAQEHFEAVTGCLDDLGV 251

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             +   + V          F       G +  +     + G             GIG   
Sbjct: 252 TYVINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLM--AQLGGQELSGIGFGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--W 381
            V   + +           +        +   A  ++       +   L   G      +
Sbjct: 310 GVDRALLALDAEHTQAADPARVDVYGVALGAPAKRRLLT-----LVNELRAAGIRADMSY 364

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            D G + G+    AD  G    +++G + +    V +K+ +   + D+ L +V+   
Sbjct: 365 GDRGLK-GAM-KGADRAGARFALVLGDRELDAGLVAVKNLVDHTQTDVPLGQVVETL 419


>gi|71803580|gb|AAX72933.1| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
          Length = 438

 Score = 80.2 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 62/417 (14%), Positives = 121/417 (29%), Gaps = 29/417 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++ R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 25  LPEDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 84

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 85  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 141

Query: 159 DAYSFDL-TPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG            I       
Sbjct: 142 GVECFGAANPATDVETIAMAYHLFEKLGIKDVTLHLNSLGSPESRSAYRQTLIDYLTPMR 201

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    +   S+ + + E+  A + A  D+      
Sbjct: 202 DQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVKDMLEALDI 261

Query: 269 DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +   V         IF F     G+  ++     +    G     +   +G G   
Sbjct: 262 PYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGL 321

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               +I         I  +      +   +  +          ++   + + G     D 
Sbjct: 322 ERLLMIIEKQGITLPIETEMDVYLAVLGDSANSK-------ALELVQAIRRQGFTAERDY 374

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+++   ++
Sbjct: 375 LGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQEVEVSFEDMMTNFAN 431


>gi|123455648|ref|XP_001315566.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121898247|gb|EAY03343.1| hypothetical protein TVAG_398680 [Trichomonas vaginalis G3]
          Length = 118

 Score = 80.2 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
           +AP+K++LI I   +    D    I   L K G     D  G  IG ++A +D +G P  
Sbjct: 1   MAPYKVNLIPINKKNAKDEDI-HNIRTNLRKKGLANTIDAAGVSIGKRYARSDEIGTPFC 59

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           + +      D  V ++ R +  +    LE++IN       
Sbjct: 60  ITMDDVTNEDGTVTLRERDSTKQVRGKLEQIINAICEMVD 99


>gi|332638292|ref|ZP_08417155.1| histidine--tRNA ligase [Weissella cibaria KACC 11862]
          Length = 436

 Score = 80.2 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 113/426 (26%), Gaps = 26/426 (6%)

Query: 38  GIYSWLPLGQKA-LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
           G    LP G+      V    R         E+  P  +S D++  S     D   KEM 
Sbjct: 11  GTADLLP-GESLKWHYVEETARVLFGDYQYSEVRTPIFESFDVFARSAGDTSDVVTKEMY 69

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
              D+ D+ +   P     +   F  +         P+  + I   FR E        R 
Sbjct: 70  DFHDKGDRHVALRPEGTAGVVRAFVENKLFGPEHQKPYKMFYIGPMFRYERPQAG---RM 126

Query: 153 REFLMKDAYSFDLT-PEGSKHSYNKMFVSY--------LRIFHRLGLKSIPMRAESGPIG 203
           R+F      +     P             +            + LG K+         I 
Sbjct: 127 RQFHQIGVEALGSDSPALDAEVIAMAVDFFQTLGVTNLKVKINSLGDKASRENYRQALIN 186

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMD-FPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               H   + AD+           +D      +    D    L+ + E   A +      
Sbjct: 187 FLTPHFDELSADSQTRLEKNPLRVLDSKDAKDQAIVADAPSILDYLTESAQAHWDKVQTY 246

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL----PMSATFKGADGKDHYVQMGSYG 318
                 D   +   V         IF   T+         + T  G          G   
Sbjct: 247 LEAMGIDYEVDANVVRGLDYYNHTIFEVMTQSEALGHGWTTITGGGRYNGLVEEFGGPEM 306

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
            G    +                   AP  + + N      V      ++   +   G  
Sbjct: 307 PGVGFGIGLERLMLLLESEGATLPEQAPLDVYVANTGDGTDVV---AMQMVQAVRSFGYS 363

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              D    ++  QF  AD LG    + +G + +++    +K+  TG    + L E+    
Sbjct: 364 AERDYQDRKLKGQFKSADRLGARFMITIGERELAEQSANLKNMTTGKEITVKLAELYTGL 423

Query: 439 SHRFSN 444
                +
Sbjct: 424 PEFIED 429


>gi|194335545|ref|YP_002017339.1| histidyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
 gi|229558702|sp|B4SCE2|SYH_PELPB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|194308022|gb|ACF42722.1| histidyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 429

 Score = 80.2 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 56/414 (13%), Positives = 109/414 (26%), Gaps = 34/414 (8%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRL-ADRNDKAMIY 106
              V  ++    +  G  E+  P  +  +L+        D  GKEM     D   +++  
Sbjct: 21  WKYVEGVVHAIASLYGFSEIRTPVFEYTELFQRGIGSTTDIVGKEMFSFLPDPKGRSLTL 80

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +      +           Y I   FR E        +  +F          +
Sbjct: 81  RPEMTAGVMRAALQNNLLSSAPVQKLYYIGELFRKERPQAGRQRQFSQF--GAELLGVSS 138

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL---------SHEFIVLADTG 217
           P         M   +  +  R     I    ++                 HE +  A   
Sbjct: 139 PAAVAEVITLMMQLFASLGLRSLKLRINSLGDTEDRLRYREALQLYFTPFHELLDDASK- 197

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE-------QWTAPYAATSDVHNEKLFDS 270
           E         +D   P+          L   ++       +    Y    D+  E +   
Sbjct: 198 ERLEKNPLRILDTKNPALQELVAGAPRLYDYLKDASLQDFEKVLFYLEERDIAYE-IDYR 256

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAA 327
           L                   G + ++     + G     G    V    + +G  R++  
Sbjct: 257 LVRGLDYYCNTAFEVTSSELGAQDAIGGGGRYDGLARELGSSVDVPASGFAVGMERLLIT 316

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           + +             V              Q   D   +I  RL K G     D     
Sbjct: 317 MEKQGLFATLAPQGPLVYVIVQQ--------QDLADNALQIVWRLRKAGIKTEVDLAARS 368

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           + +Q   A+ +     + +G+   +     +K+  T  +  ++LE V+     +
Sbjct: 369 MKAQMREANKIKAAYALFIGTTEETTGLYALKNLETSEQITLTLEAVLELLREQ 422


>gi|319746002|gb|EFV98284.1| histidine--tRNA ligase [Streptococcus agalactiae ATCC 13813]
          Length = 438

 Score = 80.2 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 64/408 (15%), Positives = 112/408 (27%), Gaps = 19/408 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  +IR    +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 32  WQYVENVIRNLFKQYHYDEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKGDRHITLR 91

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P   Y I   FR E        R REF       F  
Sbjct: 92  PEGTAPVVRSYVENKLFAPEVQKPTKMYYIGSMFRYERPQAG---RLREFHQVGVECFGS 148

Query: 165 LTPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             P     +              +     + LG            I         +  D+
Sbjct: 149 NNPATDVETIAMGHHLFEDLGIKNVKLHLNSLGSPESRQAYRQALIDYLTPIREQLSKDS 208

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D   P +    ++  S+ + + E   A + A   + +      + +  
Sbjct: 209 QRRLNENPLRVLDSKEPEDKLAVENAPSILDYLDESSQAHFDAVCHMLDALNIPYIIDTN 268

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+           A G+   +     G         +       
Sbjct: 269 MVRGLDYYNHTIFEFITEIEDNELT--ICAGGRYDGLVSYFGGPETPAFGFGLGLERLLL 326

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  S+       + I         A   +   +   G  V  D +G +I +QF  A
Sbjct: 327 ILDKQGISLPIENTIDLYIAVLGTEANLAALDLAQSIRHQGFKVERDYLGRKIKAQFKSA 386

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D     + + +GS  V   +V +K+  T     +S E +    S    
Sbjct: 387 DTFNAKVIMTLGSSEVDSKEVSLKNNQTRQEVKVSFENIKTDFSSVLK 434


>gi|320527501|ref|ZP_08028681.1| histidyl-tRNA synthetase [Solobacterium moorei F0204]
 gi|320132058|gb|EFW24608.1| histidyl-tRNA synthetase [Solobacterium moorei F0204]
          Length = 450

 Score = 80.2 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 119/417 (28%), Gaps = 21/417 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G Y  LP       +   +IRE   R    E+  P  +   ++  E+   D   KEM   
Sbjct: 37  GTYDILPDEMNRWHHTEEVIRETTKRYRYREIRTPYFEETKVFKRENDSSDMVNKEMYTF 96

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            D    +    P     +   F  H       +P  FY +   FR E   +    R R+F
Sbjct: 97  -DMGTHSYTLRPEGTAGVIRAFDQHKLYGSMEMPGRFYYLGAMFRHENPQKG---RQRQF 152

Query: 156 LMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIV 212
                      +PE    +    +    ++        I    +  S         E+  
Sbjct: 153 TQFGIENIGAKSPELDAETIALGYDIVKQMGISSIKVCINTLGDDASRAAYRTALKEYFQ 212

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL- 271
                E    C + +   P+   +   D          +        S  +  ++   L 
Sbjct: 213 PH-LEELCGDCHRRYEQNPLRILDCKVDHDKECVHAAPKLADYLNEESKNYFNRVLACLD 271

Query: 272 -------PENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                   ++  V         +F    T+      AT       DH+V+       +  
Sbjct: 272 ALEIPYEVDDHLVRGLDYYTHTVFEVVSTRPDSGAQATIFAGGRYDHFVEYYGGPEMSGI 331

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
             A  +E   +       D        +  I   D     +  K   +L   G     + 
Sbjct: 332 GFAIGMERLINLAAEEGHDFGDENSCDVYVIGLGD--VGASVLKTVQQLRHAGYSAEANL 389

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +   + +QF   D       VI+G   V ++ + IK+     +  +  EE++     
Sbjct: 390 VQRSLKAQFKSVDRNHARYVVILGEDEVKNNTMNIKNISDKSQVIIKQEELLETLKQ 446


>gi|317419952|emb|CBN81988.1| Glycyl-tRNA synthetase [Dicentrarchus labrax]
          Length = 756

 Score = 80.2 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 75/285 (26%), Gaps = 25/285 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 443 FRQHMDNEMAHYACDCWDAETKTSYGWIEIVGCADRSCFDLKCHARATKVPLVAEKPLKE 502

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDS------LPENKRVSARGI----------EV 284
            I      V Q+     A    + +    +        E        +            
Sbjct: 503 PISLNFVNVVQFEPNKGAIGKAYKKDAKIAMEYLSVCDECFITEQEQLLSETGEFTIETE 562

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
           G  F              K    ++    +     G  R++  + E +   +      + 
Sbjct: 563 GKSFKLTKDMVSVKRFQ-KTLHVEEVVPNVIEPSFGIGRIMYTIFEHTFHVREGDEQRTY 621

Query: 345 APFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
             F  ++   K      + +Q       ++   ++K G     DD    IG ++A  D +
Sbjct: 622 FSFPATVAPYKCSVLPLSQNQEFVPFVRELSEAMTKNGVSYKVDDSSGSIGRRYARTDEI 681

Query: 399 GFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHR 441
           G    + +    V+       ++ R +  +    + E+       
Sbjct: 682 GVAFGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPVIIRDL 726



 Score = 49.0 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 46/153 (30%), Gaps = 21/153 (13%)

Query: 9   PILQEN-----PRDAEIASHKLM---LRTGMIHQHS-------KGIYSWLPLGQKALDNV 53
             L+       P+D +I     M   L+    +  +        G+Y + P+G    +N+
Sbjct: 117 RTLEAKELSLQPKD-DIVDRTKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNI 175

Query: 54  NAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEE 112
               R+        +E+    L    +   SG  D +   M++     +         + 
Sbjct: 176 LQAWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADYMVKDVKNGEC-FRADHLLKA 234

Query: 113 VMTDIFRSHIKSYR---NLPFTFYQIQLKFRDE 142
            +  +      S      +     Q+    + E
Sbjct: 235 HLQKLMSDKKCSAEKKAEMEEVITQMDNYTQQE 267


>gi|118498220|ref|YP_899270.1| histidyl-tRNA synthetase [Francisella tularensis subsp. novicida
           U112]
 gi|194324404|ref|ZP_03058177.1| histidyl-tRNA synthetase [Francisella tularensis subsp. novicida
           FTE]
 gi|166227968|sp|A0Q8F1|SYH_FRATN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|118424126|gb|ABK90516.1| histidyl-tRNA synthetase [Francisella novicida U112]
 gi|194321469|gb|EDX18954.1| histidyl-tRNA synthetase [Francisella tularensis subsp. novicida
           FTE]
          Length = 421

 Score = 80.2 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 61/418 (14%), Positives = 123/418 (29%), Gaps = 34/418 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LPL       + + ++   +R    E  +P ++ ++L+  S     D   KE     DRN
Sbjct: 14  LPLDSYKWQFLESKVKLILDRYNYSETRLPIVERSELFHRSVGESSDIVSKETYDFQDRN 73

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P        +   +  + R      +     FR E   +    R R+F     
Sbjct: 74  GDSLTLRPEGTAGCVRMVIENNLATRGQTQKLWYCGPMFRYERPQKG---RYRQFYQLGV 130

Query: 161 YSFDLT-----------------PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            ++                      G          S     +R       ++    P  
Sbjct: 131 EAYGFDGIAIDLEVIAIAWSLFKELGISEYVTLELNSLGSSLNRQEYTQALLQY-LKPYH 189

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            +L  + I   D    ++  SK      I +      D I  +  +          +   
Sbjct: 190 AELDEDSIKRLDKNPLRILDSKIEKTQKILANAPKLMDFIDHDLRLRFKQTCQYLDALGV 249

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGA 321
             KL ++L          +        G++ ++     + G   +          + IG 
Sbjct: 250 RYKLNENLVRGLDYYTGLVFEWTTDKLGSQSAICAGGRYDGLVENLGGQKTAAIGFAIGM 309

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++  + +           D       + ++            E I   L ++  D   
Sbjct: 310 ERLLLLLEDLGKLPNQDNACDVFFILDSAQLH------QSLAIVENIRQELPQLKID--M 361

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYA 438
           D       SQF  AD  G  + +I+G   + +    IK       ++ ++  E+IN+ 
Sbjct: 362 DLKFGSFKSQFKKADKSGAKVAIIIGQDELDNGFAGIKFLQQNEEQQQVAFNELINFL 419


>gi|294053549|ref|YP_003547207.1| histidyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
 gi|293612882|gb|ADE53037.1| histidyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
          Length = 441

 Score = 80.2 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 68/440 (15%), Positives = 130/440 (29%), Gaps = 39/440 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
            G   + P      + +  + R        +E   P L+  +L+  +SG  +    ++  
Sbjct: 7   PGFREFYPEACARRNAIFDVWRRTAQSFNFLEYDAPVLEPLELYIEKSG--EEIVGQLFN 64

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  +A+   P     +  +  +   S +  P  ++ +   +R E   +    R R F
Sbjct: 65  FEDRGGRAVAMRPEMTPSLARLVGAKANSLKR-PVKWFSVGEFYRYERPQKG---RLRAF 120

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA- 214
              +   F     G+      + V  L+ F           ++       L+ E +  A 
Sbjct: 121 YQFNVDIFGEPGSGADAELIALCVQTLKGFGLSDADFKIRLSDRDLWLLMLAAEGLDDAA 180

Query: 215 --------DTGET-----------QVFCSKDFMDFPIPSENTDFDDIISLNSIVE----- 250
                   D  E            +VF       F    E     +  +L S +E     
Sbjct: 181 SMAVLGIIDKMERMDREKVIEKLAEVFGDAAEAFFGRIEEAVAIREFDALCSYIEALPLE 240

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI----FYFGTKYSLPMSATFKGAD 306
              A  AA        L  SL          I++G +    +Y G  +    +     A 
Sbjct: 241 GELADKAAARLDDWRSLMASLTNAGAAGFIQIDLGIVRGLAYYTGFVFEAFEATGAGRAL 300

Query: 307 GKDHYVQMGSYGIGAMRVV---AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                       +G   +     A+ + +               +             R 
Sbjct: 301 AGGGRYDALVKKLGGPEMPAVGFAMGDVTLADLLESKGRLPDVNQAPDCIAIIGGAAARP 360

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           A  +  A L   G  V +    +  G QF  A   G    +I GS+ +    V+++    
Sbjct: 361 AAMEDAATLRAAGVSVDYPLKDQGFGKQFKAATQSGASFALIYGSEELERGVVKVRDLKA 420

Query: 424 GIREDMSLEEVINYASHRFS 443
              +D++ EE++       +
Sbjct: 421 AEEQDVAREELLLTICKLLN 440


>gi|307298529|ref|ZP_07578332.1| histidyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915694|gb|EFN46078.1| histidyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 424

 Score = 80.2 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 58/411 (14%), Positives = 119/411 (28%), Gaps = 27/411 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V   IR   +R    E+  P  ++ +L+  S     D   KEM    D+  +++   
Sbjct: 23  WHYVEEAIRSISHRYSFTEIRTPIFEATELFKRSVGESTDVVQKEMYTFEDKGGRSITLR 82

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSF 163
           P     +   F  +       P   +     FR E       R       E L  ++   
Sbjct: 83  PEGTASVARAFIENSLVNLGAPIKLFYNGPMFRYEKPQAGRLRQFHQFGAEILGSESPLA 142

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
           D       +S+ K             +     R +      D   + +    T   + F 
Sbjct: 143 DFEIIEMANSFLKELKVSKTKLFINSIGCPKCREDYKTALRDYYRDKLPGMCTDCRRRFD 202

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK------LFDSLPENKRV 277
           +          +        S+   +++    +      + EK      +   L      
Sbjct: 203 TNVLRLLDCKIDKELAKKAPSILDYLDEDCRNHFEELQWYLEKADIEYEVDPLLVRGLDY 262

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            +R          G++  +     + G       +      + IG  R+V  +     + 
Sbjct: 263 YSRTAFEIRSSSLGSQDQIVGGGRYDGLVEYIGGNSCPAVGFAIGLERIVMLLKSEKVNV 322

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD--DMGEQIGSQFA 393
                P           NI+  D            RL K+G   + D  +   +  ++  
Sbjct: 323 NVPKIPQVAILAFGREENIRGFDYS---------RRLRKMGISTYVDVMERNMR--NKMK 371

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            A  +G  + +IVG + +    V +K    G +  +  + + +Y   +  +
Sbjct: 372 HAARIGAKISLIVGKEEIERDIVTVKIMSDGSQFQVDSDYMSDYVVDKLRD 422


>gi|299738974|ref|XP_002910140.1| glycyl-tRNA synthetase [Coprinopsis cinerea okayama7#130]
 gi|298403562|gb|EFI26646.1| glycyl-tRNA synthetase [Coprinopsis cinerea okayama7#130]
          Length = 769

 Score = 80.2 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 91/310 (29%), Gaps = 22/310 (7%)

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            E   R G +   E +         T    +        +         +          
Sbjct: 454 KENSERSGQVVLVEGMFLRREKRVRTLTVDERKVRDCVGTCESEGLNYKMIHYMRAPNLA 513

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E +  A   E +       +        T  +D I L   VE       A  
Sbjct: 514 SANRRSRVEALKDAIVTEKETVTWNRRL-----LGKTYREDAIILQKSVE-------AMD 561

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +    KL   L       A   E G  F   ++    +  T +    +     +    +G
Sbjct: 562 ESRLVKLKGDLTRGS--VAVKTEDGKEFTLTSELVSIVRRT-RKQSIRQFTPHVLESALG 618

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSK 374
             R++  ++E S   +       V      +   K      +  +      E+I +++ K
Sbjct: 619 FGRILYCLLEHSFSCRKQDIQRGVLSLPPIVAPTKVFIVPLSAREDFDPLVEEIASKMRK 678

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G   + DD    IG ++A  D LG P  + V    + +  V ++ R T  +   +++ +
Sbjct: 679 SGVVPYVDDSSASIGKRYARNDELGTPFGITVDFASIQNRTVTLRERDTMGQRIGNVD-L 737

Query: 435 INYASHRFSN 444
           +       +N
Sbjct: 738 VAAMVAELAN 747



 Score = 43.6 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGK 91
           G+Y + P G     N+ +  R+      G  E+    L  A +   SG    +  
Sbjct: 38 AGLYDYGPSGSALQANIISEWRKHFVVHDGMFELDTTILTPAAVLETSGHVAQFTD 93


>gi|1351153|sp|Q04451|SYG_BOMMO RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Diadenosine
           tetraphosphate synthetase; Short=AP-4-A synthetase;
           AltName: Full=Glycine--tRNA ligase; Short=GlyRS
 gi|665680|gb|AAA62231.1| glycyl-tRNA synthetase [Bombyx mori]
          Length = 680

 Score = 80.2 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 61/417 (14%), Positives = 123/417 (29%), Gaps = 75/417 (17%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R    +   LPF   QI   FR+E+ PR G++R REF M +   F
Sbjct: 241 FLRPETAQGIFVNFKRLLEFNQGRLPFAAAQIGNSFRNEISPRSGLLRVREFTMCEIEHF 300

Query: 164 DLTPEGSKHSYNKMFVS--YLRIFHRLGLKSIPMRA-----------ESGPIGGDLSHEF 210
               E  K    K   S  Y       G  +                E+        H +
Sbjct: 301 CDVKEHPKFESVKNTQSLLYSADNQEQGKPADLTTIGDAVCKGIVNNETLGYFMARIHMY 360

Query: 211 IVLADTGETQVFCSKDF-MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
           ++       ++   +    +    + +    + +S    +E       +  D+       
Sbjct: 361 MLAVGIDPKRLRFRQHMGNEMAHYACDCWDAECLSSYGWIECVGCADRSAYDLTQHTKAT 420

Query: 270 SL---PENKRVSARGIE----------VGHIFYFGTKYSLPMSATFKGADGKDHY----- 311
            +    E K  + + IE          +G  F   ++      AT   A  ++       
Sbjct: 421 GIRLAAEKKLPAPKQIEVVEAIANNGRIGKAFKKDSQAINDTLATLDNAALEEMQKELDS 480

Query: 312 -----------------------------------VQMGSYGIGAMRVVAAVIESSHDGK 336
                                                +     G  R++  ++E +   +
Sbjct: 481 NGEYTLITARGEFKLTPSLVNVKKTQKTIHVEEIIPSVIEPSFGVGRILYCILEHNFRMR 540

Query: 337 GIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                 +      ++  +K      + +   +     +   L  V      DD    IG 
Sbjct: 541 EGDEQRTYFSLPPTVAPMKCVVLPLSGNAEFQPFVRDLSQELITVDVSHKVDDSSGSIGR 600

Query: 391 QFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           ++A  D LG P  V V    + +   V ++ R +  +  + + +V        SN++
Sbjct: 601 RYARTDELGVPYAVTVDFDTIKEPHTVTLRERDSMRQVRLPMADVPTVVRD-LSNSK 656


>gi|156844100|ref|XP_001645114.1| hypothetical protein Kpol_538p16 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115771|gb|EDO17256.1| hypothetical protein Kpol_538p16 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 639

 Score = 80.2 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 54/143 (37%), Gaps = 6/143 (4%)

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVC 361
           +++   +     G  R++ A+IE     +      +V  F   +   +      + ++  
Sbjct: 476 REYIPNVIEPSFGIGRIIYALIEHCFWRRQEDEARAVFSFPAKIAPSRVLVVPLSSNKEL 535

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                   + L K       DD    IG ++A  D LG P  + +  +   D  V ++ R
Sbjct: 536 VPMTNLTTSLLKKCKISFKVDDSSVSIGRRYARNDELGTPFAITIDFESKKDETVTLRER 595

Query: 422 LTGIREDMSLEEVINYASHRFSN 444
            + ++   S+E ++N      ++
Sbjct: 596 DSKLQVRGSIESIVNAIDSIIND 618



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 2/89 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G Y + P G     N+  + R+        +E+    L   ++   SG  D +  + + 
Sbjct: 30  SGFYDYGPPGCALQANIIDLWRKHFILEENMLEVDCSILTPHEVLKTSGHVDKF-SDWMT 88

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
              +  +        E+ + +   +   S
Sbjct: 89  KDFKTGEMFRVDHLIEQTLNNRIVAEESS 117


>gi|322412866|gb|EFY03774.1| histidyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 426

 Score = 80.2 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 61/417 (14%), Positives = 118/417 (28%), Gaps = 29/417 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++ R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 13  LPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 73  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 129

Query: 159 DAYSFDL-TPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG            I       
Sbjct: 130 GVECFGAANPATDVETIAMAYHLFEKLGIKDVTLHLNSLGSPESRAAYRQALIDYLTPMR 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    +   S+ + + E+  A + A   +      
Sbjct: 190 DQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVKAMLEALDI 249

Query: 269 DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +   V         IF F     G+  ++     +    G     +   +G G   
Sbjct: 250 PYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               +I         I  +      +      +          ++   +   G     D 
Sbjct: 310 ERLLMIIEKQGLTLPIETEMDVYLAVLGDGANSK-------ALELVQAIRHQGFTAERDY 362

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+++   ++
Sbjct: 363 LGRKIKAQFKSADTFKAKLVITLGESEVEAGKAVIKNNRSRQELEVSFEDIMTNFAN 419


>gi|148658650|ref|YP_001278855.1| histidyl-tRNA synthetase [Roseiflexus sp. RS-1]
 gi|148570760|gb|ABQ92905.1| histidyl-tRNA synthetase [Roseiflexus sp. RS-1]
          Length = 457

 Score = 80.2 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 65/438 (14%), Positives = 119/438 (27%), Gaps = 36/438 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+   LP        +   +     R G   +  P ++ A+     G+     K + R  
Sbjct: 10  GMRDHLPSAMILRQYIIDTLTSVFERYGFEPLQTPVVEYAETLD--GKIGDDEKLIYRFE 67

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D   + +         +  +   +       P+  Y I   +R E   R G  R RE   
Sbjct: 68  DHGGRKVALRYDQTVPLARVVAQYQ-GQLLFPWRRYAIGQSYRGE---RPGRGRYRELWQ 123

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE-----------SGPIGGDL 206
            D          +      +    L      G  ++    +                GD+
Sbjct: 124 ADIDIVGSASPLADAEILAVLTDALTALGFTGFTTLISHRQILGGIARVSGLDDAAAGDV 183

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDF-------DDIISLNSIVEQWTAPYAAT 259
                 L   G   V            +            D    LN++ +Q      A 
Sbjct: 184 YRAIDKLDKIGIDGVRNDLLQSGVSTAAAERILALIDLQGDADEVLNALAQQLQGDERAL 243

Query: 260 SDVHNEKLF------DSLPENKRVSARGIEVGHIFYFG---TKYSLPMSATFKGADGKDH 310
             + N +          +PE + V A  +  G  +Y G                  G+  
Sbjct: 244 QAIDNVRAIIGYARAMGVPEERIVIAPRLARGLSYYTGAVFESIVQNPPMGSLLGGGRYD 303

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            +     G     V  A                 A   I+   +   +        ++  
Sbjct: 304 ELIGMFAGRSIPTVGLAFGIERLHDVMEELGMGPASRTIATAFVTLFNPDMAAESLRLAQ 363

Query: 371 RLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            L + G  V    D   E++G Q   AD  G P  +++G   ++  +V +K   +G ++ 
Sbjct: 364 ELRRAGLLVETALDPS-EKLGKQLQYADRRGIPYALVIGPDELARGEVVVKDLRSGAQQS 422

Query: 429 MSLEEVINYASHRFSNNR 446
           +    V +         R
Sbjct: 423 VVRSAVASQLRSAADARR 440


>gi|297851412|ref|XP_002893587.1| glycyl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata]
 gi|297339429|gb|EFH69846.1| glycyl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata]
          Length = 730

 Score = 80.2 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 13/145 (8%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV---APFKISLINIK------ 355
              +     +     G  R++  + E     +     D       F   +  IK      
Sbjct: 565 EHQRVFTPSVIEPSFGIGRIIYCLYEHCFSTRPSKAGDEQLNLFRFPPLVAPIKCTVFPL 624

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +Q   +A + I   L+ VG     D  G  IG ++A  D LG P  + V     SD+ 
Sbjct: 625 VQNQQFEEAAKVISKELASVGISHKIDITGTSIGKRYARTDELGVPFAITVD----SDAS 680

Query: 416 VEIKHRLTGIREDMSLEEVINYASH 440
           V I+ R +  +  +SL+E  +  S 
Sbjct: 681 VTIRERDSKDQVRVSLKEAASVVSS 705



 Score = 51.3 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G++ + P G     NV +  R+        +E+  P +    +   SG  D +   M++
Sbjct: 142 AGLFDYGPPGCAIKSNVLSFWRQHFILEENMLEVDCPCVTPEVVLKASGHVDKFTDLMVK 201

Query: 96  LADRNDKAMIYGPTHEEVMT 115
             ++           ++  T
Sbjct: 202 D-EKTGTCYRADHLLKDYCT 220


>gi|218671001|ref|ZP_03520672.1| threonyl-tRNA synthetase [Rhizobium etli GR56]
          Length = 98

 Score = 79.8 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 26/64 (40%)

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G +V  D   E+I  +     +   P+ ++ G K   +  V I+   +  +  M L+  +
Sbjct: 15  GLNVETDFRNEKINYKIREHSVTKVPVIIVCGRKEAEERTVNIRRLGSQDQVSMGLDAAV 74

Query: 436 NYAS 439
              +
Sbjct: 75  ESLT 78


>gi|315186817|gb|EFU20575.1| histidyl-tRNA synthetase [Spirochaeta thermophila DSM 6578]
          Length = 437

 Score = 79.8 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 71/449 (15%), Positives = 131/449 (29%), Gaps = 57/449 (12%)

Query: 31  MIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDS 88
           MI  +  KG   +LP  +    ++   + E     G + +  P L+ A+ L  +SG    
Sbjct: 1   MIQPRVLKGFRDFLPDLEARKKSIVRTLEEVFTSFGYLPIDTPVLEYAEILLGKSG--GE 58

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             K++ R  D   + +                H+     LPF  Y I   FR E   R  
Sbjct: 59  TEKQVYRFTDHGGRDVALRFDLTVPFARFMAQHMAELY-LPFRRYHIAKVFRGENTQRG- 116

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG-------- 200
             R REF+  D          +      +    L     LG++   +             
Sbjct: 117 --RYREFMQCDFDIVGPDSTSADLEVLLIMQKALAS---LGMERFTIHLSHRGVLQDFLA 171

Query: 201 ------------------PIGGDLSHEFIVLADTGETQVFCSKDFM--DFPIPSENTDFD 240
                              IG +   E +      E              P  + +   +
Sbjct: 172 RLEVSEPVEVLRTVDKIRKIGREKVRETLAQLSDEERAGRILDFIAPGSEPEEALSRMEE 231

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFY-----FGTK 293
            + + N  + +    +A   ++   + F   P       RG++   G +F          
Sbjct: 232 GVGADNPHLARLKEIWAVIGELGLARFFTIDP----SITRGLDYYTGVVFETFLSDLPDI 287

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
            S+     +    G      M   G                    I   +     + +  
Sbjct: 288 GSVCSGGRYDNLVGLYSAQSMSGVGASIGLDRLMAAMQELGMLEAIPTMAPEVLVVCM-- 345

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
               ++        + A L   G          ++G QF+ A+  G P  +I+G   ++ 
Sbjct: 346 ----EERFLAHYHGVAAALRARGVRTEVYPQARKLGQQFSYAEKKGIPFALIMGEDEIAA 401

Query: 414 SKVEIKHRLTGIREDM-SLEEVINYASHR 441
             + +K      +  +  LEEV++   HR
Sbjct: 402 GAMALKDLAARTQRVVRGLEEVVHAVEHR 430


>gi|72102861|ref|XP_784166.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115960334|ref|XP_001195994.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 684

 Score = 79.8 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/299 (10%), Positives = 81/299 (27%), Gaps = 22/299 (7%)

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
              K   +   + + +              ++         E +  AD     + C    
Sbjct: 367 FMIKVGIDPKKLRFRQHMFNEMAHYATDCWDAETKTSYGWVECVGNADRSCYDLTCHAKH 426

Query: 228 MDFPIPSENT--------DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
               + +E            +     + + + +        +       D L + ++   
Sbjct: 427 SKVAMVAEKKLPEPKTIDITEAAPVKSVMGKAFKKEAKVVVEHLTSLEADRLADLEKALN 486

Query: 280 RGIE-----VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
              E      G  F              K    ++    +     G  R++ +++E +  
Sbjct: 487 DNSEATVEVNGKSFKLTPDMLKINRYQ-KTVHVEEFTPSVIEPSFGVGRILYSILEHNFK 545

Query: 335 GKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +      +       +   K      + ++      + +   LS        D     I
Sbjct: 546 VRENDEQRTYFTLPPIIAPYKCCVLPLSSNKDFEPLVKTLAQALSNASISHKVDSSSGSI 605

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           G ++A  D +  P  + V    + +   V ++ R T  +    + +V +      S+++
Sbjct: 606 GRRYARTDEISVPFCITVDFDSLKEPHTVTLRDRDTFEQVRTLVSDVADIIRD-LSSDK 663



 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     N   I R       G +E+    L   +++  SG  + +   M++
Sbjct: 96  SGLYDFGPTGCAMKANFINIWRNHFIIEEGMLEVDSAILAPENVFKASGHVERFADFMVK 155

Query: 96  LADRNDK 102
                + 
Sbjct: 156 DGKTGEC 162


>gi|222474830|ref|YP_002563245.1| histidyl tRNA synthetase (hisS) [Anaplasma marginale str. Florida]
 gi|254994688|ref|ZP_05276878.1| histidyl-tRNA synthetase [Anaplasma marginale str. Mississippi]
 gi|255002804|ref|ZP_05277768.1| histidyl-tRNA synthetase [Anaplasma marginale str. Puerto Rico]
 gi|255003936|ref|ZP_05278737.1| histidyl-tRNA synthetase [Anaplasma marginale str. Virginia]
 gi|254782305|sp|B9KHM7|SYH_ANAMF RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|222418966|gb|ACM48989.1| histidyl tRNA synthetase (hisS) [Anaplasma marginale str. Florida]
          Length = 430

 Score = 79.8 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 58/413 (14%), Positives = 122/413 (29%), Gaps = 38/413 (9%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLAD 98
            W          +  +  +   R G + +  P  +  D+++++     D  GKEM    D
Sbjct: 23  FWH---------IRDVAHDIGERYGFVPVETPIFEFQDVFLKTLGDSSDIIGKEMYSFPD 73

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           R    ++  P     +  +          LP   +     FR E   +    R R+F   
Sbjct: 74  RGGDVLVLRPELTAAVARMLICERL---TLPARLFTFGPVFRYERPQKC---RQRQFHQI 127

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +   F              +     +  R  ++       +     +  +  +   +  E
Sbjct: 128 NYEHFGAGCTADAELMALAYDILGALNLRSEVQLEINSLGNQDSVLEYRNSLLKYFEKHE 187

Query: 219 TQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
             +     +     P+   ++     I++          Y   S +    +   L     
Sbjct: 188 HALSEDSRRRLQTNPLRILDSKDRGDIAILCGAPVIADFYDDESKMTFNGVMQQLDNLGI 247

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                 + V       G +F F T       A   G         MG    G        
Sbjct: 248 PYTVNPRLVRGLDYYCGTVFEFKTTSLGSQDAVIAGGRYDKLVASMG----GGDVPAVGF 303

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                    +        F ++ + +    +       +    L   G  V  D + E++
Sbjct: 304 AGGVERLASLAAYSHSTRFSVAFLPLG---EEAARCAMRSAYELRGRGIRVLCDGVVEKL 360

Query: 389 GSQF--AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             +     AD  G  L +I+G + ++  +V  +H  TG+++ +S+  + +Y S
Sbjct: 361 --KIGLKHADRSGVDLALILGDEEIAKGEVLCRHMDTGLQQTVSISNLGDYVS 411


>gi|87118476|ref|ZP_01074375.1| histidyl-tRNA synthetase [Marinomonas sp. MED121]
 gi|86166110|gb|EAQ67376.1| histidyl-tRNA synthetase [Marinomonas sp. MED121]
          Length = 426

 Score = 79.8 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 65/433 (15%), Positives = 131/433 (30%), Gaps = 32/433 (7%)

Query: 31  MIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRY 86
           M  +     G+   LP        + A +    +  G  ++  P +++ DL+        
Sbjct: 1   MARKIQAIRGMNDILPGQSSVWQYLEAKVAAVVDSYGYDQIRFPVVENTDLFKRGVGETT 60

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D   KEM    DRN  ++   P                +  +   +Y     FR E   +
Sbjct: 61  DIVEKEMYTFDDRNGDSLTLRPEGTASCVRAADQAGLLFNQVQRLWYV-GPMFRYERPQK 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKM----------FVSYLRIFHRLGLKSIPMR 196
               R R+F      +F ++          +                  + +G  +    
Sbjct: 120 G---RYRQFHQIGVETFGMSSPDIDAELIILTARLWQQLGLLEHVELELNTIGTAAAREA 176

Query: 197 AES------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
            ++           +L  +      +   ++  SKD     I ++  D  D I   S VE
Sbjct: 177 YKAALVEYLTQFKDELDEDSQRRLSSNPLRILDSKDARTQEILNDAPDLADHIDDESRVE 236

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
                    ++  + KL   L        + +      + G + ++     + G   +  
Sbjct: 237 FERLQAILAANNVSFKLNSRLVRGLDYYGKTVFEWVTTHLGAQATVCAGGRYDGLVEQLG 296

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                + G          IE        +          + + I +  +    A   +  
Sbjct: 297 GKATPAVGFAM------GIERLVLLLETLELIPDDAKPQTDVFIASMGEAAELATFTLAE 350

Query: 371 RLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           RL +   G  +     G     Q   AD  G    +I+G   V++   +IK   TG +++
Sbjct: 351 RLREADKGWRILRHCGGGNFKKQMKKADASGARFTLIMGDNEVAEGICQIKDMSTGEQKN 410

Query: 429 MSLEEVINYASHR 441
             ++ V +Y S +
Sbjct: 411 CVIDAVADYLSTK 423


>gi|163791445|ref|ZP_02185854.1| histidyl-tRNA synthetase [Carnobacterium sp. AT7]
 gi|159873309|gb|EDP67404.1| histidyl-tRNA synthetase [Carnobacterium sp. AT7]
          Length = 441

 Score = 79.8 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 60/419 (14%), Positives = 119/419 (28%), Gaps = 15/419 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAI--EMSVPTLQSADLWVES--GRYDSYGKEM 93
           G    LP   +    V  I+            E+  P  +S DL+        D   KEM
Sbjct: 8   GTADLLPEDSRKWQYVEEIL--NMVLADYQFGEIRTPIFESYDLFSRGVGETSDIVSKEM 65

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMR 151
               D+ ++ M   P     +   F  +       N P+  Y     FR E      + +
Sbjct: 66  YDFYDKGERHMSLRPEGTAPVVRAFVENKLFGPEHNKPYKVYYKGPMFRYERPQGGRMRQ 125

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             +  ++   S +   +    +        L +     + +    AES     +    ++
Sbjct: 126 FHQLGVEVFGSTNPATDVESMALAMALFEELGLEKLTLVINSLGDAESRLAYREALIAYL 185

Query: 212 VLA------DTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHN 264
                    D+           +D    ++     +  S+ + + E+    + A  ++  
Sbjct: 186 EPHFEELSSDSQTRLHKNPLRVLDSKDKNDKEIVKNAPSILDYLSEESKTHFEAVKEMLT 245

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                 + ++  V         IF   +      + T   A G+   +     G      
Sbjct: 246 ALNIPFVVDSNMVRGLDYYTHTIFEVMSDAPGFGAITTICAGGRYDGLVEEVGGPATPGF 305

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             A+               +       + +    +       KI   +   G     D M
Sbjct: 306 GFALGLERLMMTLEAEEIEIPDTHEVDVYVIGLGEATNLESLKIVQAIRGAGLSAERDYM 365

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             +I  QF  A  L   + + +G   +   +   K   TG    +SL E+       F+
Sbjct: 366 NRKIKGQFKTASKLKAKVVITLGDAELERKEANFKVMKTGKESSVSLAEIYKDFEKLFN 424


>gi|94496665|ref|ZP_01303241.1| histidyl-tRNA synthetase [Sphingomonas sp. SKA58]
 gi|94424025|gb|EAT09050.1| histidyl-tRNA synthetase [Sphingomonas sp. SKA58]
          Length = 419

 Score = 79.8 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 61/391 (15%), Positives = 117/391 (29%), Gaps = 26/391 (6%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   + VP  ++  ++  S     D   KEM    DR   ++   P     ++  + + 
Sbjct: 42  YGFQRVEVPVFEATAVFARSLGESTDVVSKEMYTFEDRGGDSITLRPEFTAGISRAYITE 101

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                  P         FR E   +    R R+F   DA        G+      M    
Sbjct: 102 GWQQYA-PLKVATHGPLFRYERPQKG---RFRQFHQLDAEIIGAGEPGADVELLVMGDQL 157

Query: 182 LRIFHRLGL----KSIPMRAESGPIGGDLSHEFIVLA-----DTGETQVFCSKDFMDFPI 232
           LR     G+     ++   A        L   F         D+ E         +D   
Sbjct: 158 LRELKIEGVTLTLNTLGDAASRDAWRAALIAHFEANRGDLSEDSVERLAKNPLRILDSKD 217

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFYF 290
           P +    D    +++ +      +        +    +   N R+  RG++      F F
Sbjct: 218 PRDRPIADSAPDIDAYLTDEARGFFEKVTAGLDAAGVAWERNARL-VRGLDYYRHTAFEF 276

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            T   L    T  G    D  ++            AA IE           +  +   I 
Sbjct: 277 VTDR-LGAQGTVLGGGRYDGLIENLGGPATPAVGWAAGIERLAMLVDAPEVEKPSVVLIP 335

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           +       +        I A L + G        G  +  +   A+  G    +I+G   
Sbjct: 336 MG------EAAEARATGIIADLRRAGIACDMGYRG-NMKKRMQRANASGADWAIILGDDE 388

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           ++  +  +++  TG ++ ++L+ ++   +  
Sbjct: 389 LAQGEAAVRNLGTGEQQAVALDALVGTVTAL 419


>gi|55926180|ref|NP_001007492.1| glycyl-tRNA synthetase [Xenopus (Silurana) tropicalis]
 gi|51258152|gb|AAH79928.1| glycyl-tRNA synthetase [Xenopus (Silurana) tropicalis]
          Length = 745

 Score = 79.8 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 76/283 (26%), Gaps = 24/283 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 435 FRQHMENEMAHYACDCWDAEAKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKE 494

Query: 241 --------------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                          I        +    Y A  D       + L + K   +   E G 
Sbjct: 495 PKTIDVTQFDASKSAIGKAYKKDAKLVLEYLAICDECFILEQEKLLQEKGEFSIETE-GK 553

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            F              K    ++    +     G  R++  V E +   +      +   
Sbjct: 554 TFLLTKDMVSVKKFQ-KTIHVEEIVPNVIEPSFGLGRIMYTVFEHTFQVRQGDEQRTFFT 612

Query: 347 FKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           F   +   K      + +       +++   L+K G     DD    IG ++A  D +G 
Sbjct: 613 FPAIVAPYKCSVLPLSQNLEFMPFVKELSDALTKNGVSHKVDDSSGSIGRRYARTDEIGV 672

Query: 401 PLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHR 441
              + +    V+       ++ R +  +   ++ E+       
Sbjct: 673 AFGITIDFDTVNRTPHTATLRDRDSMRQIRAAVSELPGIVRDL 715



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 46/152 (30%), Gaps = 17/152 (11%)

Query: 9   PILQEN-----PRDAEIASHKLM---LRTGMIHQHS-------KGIYSWLPLGQKALDNV 53
             L+       P+D +I     M   L+    +  +        G+Y + P+G    +N+
Sbjct: 109 RTLEAKELSLQPKD-DIVDRAKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNI 167

Query: 54  NAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEE 112
             I R+        +E+    L    +   SG  D +   M++     +           
Sbjct: 168 IQIWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADYMVKDVKNGECFRADHLLKAH 227

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           +   +      + +         Q+   ++  
Sbjct: 228 LQKLMADKKCPAEKKQEMESVLTQMDNYNQQD 259


>gi|330443451|ref|NP_009679.2| Grs1p [Saccharomyces cerevisiae S288c]
 gi|329136729|tpg|DAA07239.2| TPA: Grs1p [Saccharomyces cerevisiae S288c]
          Length = 667

 Score = 79.8 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 6/142 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              +++   +     G  R++ +V E S   +      SV  F   +   K      ++ 
Sbjct: 497 EHVREYVPSVIEPSFGIGRIIYSVFEHSFWNRPEDNARSVLSFPPLVAPTKVLLVPLSNH 556

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++   L K       DD G  IG ++A  D LG P  V +  +   D  V +
Sbjct: 557 KDLVPVTTEVAKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESAKDHSVTL 616

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R +  +   S+E VI     
Sbjct: 617 RERDSTKQVRGSVENVIKAIRD 638



 Score = 50.5 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G    +N+    R+        +E+    L   ++   SG  D +   M R
Sbjct: 41  SGLYDYGPPGCAFQNNIIDAWRKHFILEEDMLEVDCTMLTPYEVLKTSGHVDKFSDWMCR 100


>gi|148230983|ref|NP_001086647.1| glycyl-tRNA synthetase [Xenopus laevis]
 gi|50417426|gb|AAH77232.1| Gars-prov protein [Xenopus laevis]
          Length = 747

 Score = 79.8 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 79/283 (27%), Gaps = 24/283 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 437 FRQHMENEMAHYACDCWDAEAKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKE 496

Query: 241 --------------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                          I        +    Y    D       + L + K       E G 
Sbjct: 497 PKTVNVTEFVASKGAIGKEYKKDAKLVLEYLNICDECFILEMEQLLQEKGKFTIETE-GK 555

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            F   TK  + +  + K    ++    +     G  R++  V E +   +      +   
Sbjct: 556 TFVL-TKDMVSVKKSQKTIHVEEIVPNVIEPSFGLGRIMYTVFEHTFQVRQGDEQRTYFT 614

Query: 347 FKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           F   +   K      + +       +++   L+K G     DD    IG ++A  D +G 
Sbjct: 615 FPAIVAPYKCSVLPLSQNLEFMPFVKELSDALTKNGVSHKVDDSSGSIGRRYARTDEIGV 674

Query: 401 PLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHR 441
              + +    V+       ++ R +  +   ++ E+       
Sbjct: 675 AFGITIDFDTVNRTPHTATLRDRDSMRQIRAAVSELPGIVRDL 717



 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 45/152 (29%), Gaps = 17/152 (11%)

Query: 9   PILQEN-----PRDAEIASHKLM---LRTGMIHQHS-------KGIYSWLPLGQKALDNV 53
             L+       P+D +I     M   L+    +  +        G+Y + P+G    +N+
Sbjct: 111 RTLEAKELSLQPKD-DIVDRAKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNI 169

Query: 54  NAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEE 112
             I R+        +E+    L    +   SG  D +   M++     +           
Sbjct: 170 IQIWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADYMVKDVKNGECFRADHLLKAH 229

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           +   +      + +         Q+    +  
Sbjct: 230 LQKLMSDKKCPAEKKQEMESVLTQMDNYSQQD 261


>gi|326495766|dbj|BAJ85979.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 734

 Score = 79.8 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 55/420 (13%), Positives = 118/420 (28%), Gaps = 82/420 (19%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R    +   LPF   QI   FR+E+ PR G++R REF M +   F
Sbjct: 291 FLRPETAQGIFVNFKRLLEFNQGRLPFAAAQIGNAFRNEISPRSGLLRVREFTMAEIEHF 350

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE---------------SGPIGGDLSH 208
               + S   +  +  + ++++            +               +        +
Sbjct: 351 CDPSDKSHSKFIDVENTTMKLYSACNQMDGQPPVDITIGEAVSKGMVANQTLGYFMARIY 410

Query: 209 EFIVLAD-TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV--HNE 265
            F++    T E   F      +    + +    + ++    VE       +  D+  H E
Sbjct: 411 MFMMKIGVTKEKLRFRQHMSNEMAHYAVDCWDAECLTSYGWVECIGCADRSAYDLSKHGE 470

Query: 266 KLFDSL--------PENKRVSARGIEVGHIFYFGTKYSLPMSATF----KGADGKDHYVQ 313
           +    L        P+  +V+   ++ G I     K S                + H   
Sbjct: 471 ETKQRLVAERKLPAPKTIQVTELEMDKGLIGKTLRKDSKECVEKLSKLSINEVKQLHEFT 530

Query: 314 MGSYG---------------------------------------------IGAMRVVAAV 328
                                                              G  R++  +
Sbjct: 531 DNGKPDPTTGLTLCKIGNKEFSINKEMIPLKSYSKTIHVEEIVPNVIEPSFGIGRIIYTL 590

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKA------HDQVCRDACEKIYARLSKVGCDVFWD 382
           +E +   +      +       +  +K        +         +   L   G     D
Sbjct: 591 LEHTFKVREKDEQRTYLSLPPLVAPLKCCVLPLLDNDKFTPLVSMLSKNLCLKGVSNKID 650

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFV-SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D    +G ++A  D +  P  + V    +     V I+ R +  +  + + EV++   + 
Sbjct: 651 DSSGSVGRRYARTDEIAVPYCITVDFDSLVEPQSVTIRERDSMEQIRVPVSEVVDLVQNL 710



 Score = 45.9 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 15/89 (16%)

Query: 25  LMLRTGMIHQH------SKGIYSWLPLGQKALDNVNA-----IIREEQNRTGAIEMSVPT 73
           LM+R     Q         G+Y + P+G     N+        + EEQ     +E+    
Sbjct: 123 LMIRRFFYDQSFSIYGGVAGLYDFGPMGCALKSNILEQWKRFFVLEEQM----LEIDCSM 178

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDK 102
           L    +   SG  + +   M++     + 
Sbjct: 179 LTPERVLETSGHVEKFADTMVKDKKTGEC 207


>gi|227488798|ref|ZP_03919114.1| histidyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091220|gb|EEI26532.1| histidyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 405

 Score = 79.8 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 61/411 (14%), Positives = 117/411 (28%), Gaps = 41/411 (9%)

Query: 57  IRE----EQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +RE    E  R G   + +P  +   L+        D   KEM    DR  +++   P  
Sbjct: 11  VRETFTHEAQRAGFEHIELPIFEDTHLFARGVGESTDVVTKEMYTFEDRGGRSVTLRPEG 70

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +      H      LP         FR E RP+ G  R  +  +         P   
Sbjct: 71  TAGVMRAVIEHNLDRGQLPVKLVYSGPFFRYE-RPQAGRYRQLQ-QVGVEAIGVDDPALD 128

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
                     Y  +        +     AE  P   +    F+      E      +   
Sbjct: 129 AEIIALADRCYKSVGLTGYRLDLSSLGDAECRPAYREKLQAFLRKLPLDEE---TQRRAE 185

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--------NKRVSAR 280
             P+   +    ++  +           + +S  H E +   L +         K V   
Sbjct: 186 INPLRVLDDKRPEVQEMLVDAPLLLDHLSNSSREHFEVVKGLLGDFGVSYTINPKLVRGL 245

Query: 281 GIEVGHIFY-----FGTKYSLPMSATFKGADGK--DHYVQMGSYGIGAMRVVAAVIESSH 333
                  F       G +  +     + G   +     +    +G+G  R + A+     
Sbjct: 246 DYYTKTCFEFVHEGLGAQSGIGGGGRYDGLMAQLGGQELSGIGFGLGVDRTLLAL----- 300

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQ 391
                +   S     +  + + +  +        +   L   G      + D G + G+ 
Sbjct: 301 -EAEGVSAGSPRRVDVYGVPLGSEAKRVLA---GVVNNLRAAGVSTDMSYGDRGLK-GAM 355

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              A   G    +++G + ++D  V ++      +E +SL  V  +   R 
Sbjct: 356 -KGASRSGARYCLVLGEQELADGNVAVRDMNNHEQETVSLSAVQAFLEERL 405


>gi|213023484|ref|ZP_03337931.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 149

 Score = 79.8 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 2/74 (2%)

Query: 6   YFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
           Y   + +   RD      +L L    + + + G+  W   G      +   +R +     
Sbjct: 78  YLQRLEEAAKRDHRKIGKQLDLY--HMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQ 135

Query: 66  AIEMSVPTLQSADL 79
             E+  P +    L
Sbjct: 136 YQEVKGPFMMDRVL 149


>gi|227890854|ref|ZP_04008659.1| histidyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|227867263|gb|EEJ74684.1| histidyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
          Length = 431

 Score = 79.8 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 65/407 (15%), Positives = 114/407 (28%), Gaps = 18/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DSYGKEMLRLADRNDKAMIYG 107
              V    RE   +    EM  P  +S +++   SG   D   KEM    D+ D+ +   
Sbjct: 20  WQYVEEKARELFKKYRYEEMRTPIFESFEVFSRTSGETSDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  +         PF  Y +   FR E        R REF      +F +
Sbjct: 80  PEGTAGVVRSFVENKLYGPEVQKPFKTYYMGPMFRYERPQSG---RLREFHQIGVEAFGV 136

Query: 166 TPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                      M           S     + LG            I      E  +  D+
Sbjct: 137 DNPTLDVEVMAMAVDLLKSFGLNSLRVAVNTLGDLETRNNYRQALIDYLEPFEAELSDDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            E         +D     +     +  S+ + + E     +     + N+   + + ++ 
Sbjct: 197 KERLHKNPLRVLDSKDEKDKEIVANAPSILDYLTEDAQKHFETVKSLLNDLGIEYVIDSN 256

Query: 276 RVSARGIEVGHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            V         IF       +     T   A G    +     G     V   +      
Sbjct: 257 MVRGLDYYNHTIFEIMSDSKAFNGKWTTVCAGGHYSGLVEQLGGPQTPGVGFGLGVERLL 316

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                  D++       + +     V      K+   L   G     D +  +   QF  
Sbjct: 317 LILDAEEDALPIENPLDVYVVGIGDVTNAVTLKLVQNLRHQGFTADRDYLNRKPKGQFKS 376

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           A+ L     + +G   + + +  +K    G    + LE+V N  +  
Sbjct: 377 ANRLNARFTLTIGETELQEQEANLKFMENGNEISVKLEDVENDFASL 423


>gi|312962904|ref|ZP_07777391.1| Histidyl-tRNA synthetase [Pseudomonas fluorescens WH6]
 gi|311282931|gb|EFQ61525.1| Histidyl-tRNA synthetase [Pseudomonas fluorescens WH6]
          Length = 429

 Score = 79.8 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 57/419 (13%), Positives = 127/419 (30%), Gaps = 22/419 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        V   +    +  G  ++ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRYVEGTVARLLDNYGYKQIRMPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H  +    P   + I   FR E RP+ G  R    
Sbjct: 70  FEDRNGDSLTLRPEGTAACVRAVLEHGLTGGGQPQKLWYIGPMFRHE-RPQKGRYRQFHQ 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR--AESGPIGGDLSHEF--- 210
           +  + ++ D     ++       +  +          +     +ES     +   EF   
Sbjct: 129 IGLEVFNLDGPDIDAELIVLTWRLWGMLGIRDAVKLELNSLGTSESRARYREALVEFLSA 188

Query: 211 ---IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW--TAPYAATSDVHNE 265
              ++  D+           +D           D   +   ++    T      + +   
Sbjct: 189 RLDMLDEDSQRRLKTNPLRVLDTKNADTQAALVDAPKMADYLDDESRTHFEGLKARLDAA 248

Query: 266 ----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                +   L       ++ +        G + ++     + G   +         G+G 
Sbjct: 249 GIPYVINPKLVRGLDYYSKTVFEWVTDKLGAQGTVCAGGRYDGLVEQMGGKPTT--GVGF 306

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
              +  +I      + +    +           +A +       EK+  +L      +  
Sbjct: 307 AMGIERLILLLETLEQVPEEIARQVDVYLCAFGEAAELAALALSEKVRDQLP--NLRLQI 364

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYAS 439
           +       SQF  AD  G    +I+G   ++   +  K  R  G +++++ + +  + +
Sbjct: 365 NAGAGSFKSQFKKADKSGALYALILGDDELARQVIGFKPLRGQGEQQNIAFDALAAHLA 423


>gi|114332132|ref|YP_748354.1| histidyl-tRNA synthetase [Nitrosomonas eutropha C91]
 gi|122313187|sp|Q0AE43|SYH_NITEC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|114309146|gb|ABI60389.1| histidyl-tRNA synthetase [Nitrosomonas eutropha C91]
          Length = 421

 Score = 79.8 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 59/418 (14%), Positives = 109/418 (26%), Gaps = 22/418 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP            IR      G   +  P ++  DL+V S G   D   KEM  
Sbjct: 10  GMNDILPDESDLWGFFEDTIRTWLAAYGYRNLRTPIVEQTDLFVRSIGEVTDIVEKEMYS 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+ +   +                     + P   Y     FR E   +    +  + 
Sbjct: 70  FIDQLNGENLTLRPEGTASCVRAVIEHNLLYSGPQRLYYSGPMFRHERPQKGRYRQFHQV 129

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG----DLSHEFI 211
            ++         +             L I       S     ES  I          +F 
Sbjct: 130 GVEALGFVGPDIDAELIIMCARLWRLLGIPDVRLEISTLGSIESRLIYRARLISYLEKFY 189

Query: 212 VLADTGETQVFCSKDF--MDFPIPSENTDFDDIISLNSIVEQ--WTAPYAATSDVHNE-- 265
              D    +   +     +D   P      +    L   +++       A    + N+  
Sbjct: 190 DELDEDARRRLKTNPLRILDSKNPGMREILEGAPHLFDDLDEDSLIHFDALQRILRNQGI 249

Query: 266 --KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             ++   L        R +        G + ++     + G   +       + G     
Sbjct: 250 SFEINHRLVRGLDYYNRTVFEWVTDKLGAQGTICAGGRYDGLIAQIGGKPAPACGFAMGI 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
                + S  D        +     +  + +     +      K+   L   G  V    
Sbjct: 310 ERILSLISETDV-------AAEIHTVPDVYVVHQGDIAAGFSWKVAESLRDAGFKVVLHS 362

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASH 440
            G    +Q   AD  G     I+G    +  +V IK  R    +  + L +V  +  +
Sbjct: 363 GGGSFKAQMKKADASGARFAAIIGDDEAATGQVSIKSLREAVEQVKIDLTKVAVFLEN 420


>gi|167627174|ref|YP_001677674.1| histidyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189082296|sp|B0TWR5|SYH_FRAP2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|167597175|gb|ABZ87173.1| Histidine--tRNA ligase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 424

 Score = 79.8 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 55/406 (13%), Positives = 118/406 (29%), Gaps = 20/406 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              + + I+   ++    E+ +P L+ ++L+  S     D   KE     DR+ +++   
Sbjct: 21  WQFLESKIKSILDKYNYDEVRLPVLEKSELFHRSVGETSDIVSKETYDFVDRSGESLTLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P        +   +  + R      +     FR E   +    R R+F      ++    
Sbjct: 81  PEGTAGCVRMVIENSLANRGQTQKLWYSGPMFRYERPQKG---RYRQFYQLGVEAYGYDN 137

Query: 168 ----------EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                       +      +        + LG  S         +     +   +  D+ 
Sbjct: 138 IAIDLEILTISWNLFRELGISECVKLELNSLGSSSNRQEYTKALLEYLKPYHAQLDEDSI 197

Query: 218 ETQVFCSKDFMD-FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           +         +D     ++    +    ++ I E     +  T +  +    +     K 
Sbjct: 198 KRLDKNPLRILDSKNEQTQQVLANAPKLIDFIDEDSLTRFEQTCEYLDNLGVNYQVNQKL 257

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V       G +F + T      +A   G    +    +G    GA+     +       +
Sbjct: 258 VRGLDYYSGLVFEWVTDRLGAQAAVCAGGRYDNLIESLGGQKAGAIGFAIGLERLLLLLE 317

Query: 337 GIIWPDSVAPFKISLINIKAHD-QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                            +  +         E +   L  +  D   D       SQF  A
Sbjct: 318 SEGKLPIEDDKSDVFFILDNNQLHRSLLLVENVRQELPALKID--MDLKFGSFKSQFKKA 375

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYASH 440
           D     + VI+G   +    V +K+      +E + L ++IN+   
Sbjct: 376 DKSDAKIAVIIGQDELLQQAVGVKYLQQDKQQEQIPLNKLINFLEK 421


>gi|257888147|ref|ZP_05667800.1| histidyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257899578|ref|ZP_05679231.1| histidyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|293571371|ref|ZP_06682402.1| histidyl-tRNA synthetase [Enterococcus faecium E980]
 gi|257824201|gb|EEV51133.1| histidyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257837490|gb|EEV62564.1| histidyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|291608587|gb|EFF37878.1| histidyl-tRNA synthetase [Enterococcus faecium E980]
          Length = 430

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/403 (12%), Positives = 111/403 (27%), Gaps = 13/403 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         EM  P  +  ++   S     D   KEM    D+ ++ +   
Sbjct: 20  WQFVEETARLLFRDYQYNEMRTPIFEHYEVISRSVGDTTDIVSKEMYDFYDKGERHVTLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  H         PF  + +   FR E   +  + +  +  ++   S + 
Sbjct: 80  PEGTAPIVRSFVEHKLFGPEYAKPFKTFYMGPMFRYERPQKGRLRQFHQIGVEAFGSENP 139

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             +         F   L I     + +     ++         ++++  +  E      +
Sbjct: 140 ATDVESMVMALDFFKQLGITQIRLVINSLGDKDTRQAYRQALIDYLLPFE-AELSEDSKR 198

Query: 226 DFMDFPIP--------SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
              + P+          +    D    L+ + E     +     + +        ++  V
Sbjct: 199 RLHENPLRVLDSKDKRDQKFVADAPSILDYLSEPAQKHFDTVVSMLDALAVPYEIDSNMV 258

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                    IF   +      +     A G+   +     G        A+         
Sbjct: 259 RGLDYYTHTIFEIMSDAPKMGAQATICAGGRYDNLVEELGGPSTPGFGFAMGIERLLLTM 318

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                 +  F      + A          K+   +   G     D M  +  +QF  AD 
Sbjct: 319 EAEEVVIPAFNELDAYVVALGDETNIEALKVVQAIRNFGFSADRDFMNRKAKAQFKTADK 378

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
               L +++G   ++   + +K   +   +   LEE+  +   
Sbjct: 379 ANAKLVLVIGEDELASQTINVKAMASRKEKSFPLEEIYEHFDE 421


>gi|324999166|ref|ZP_08120278.1| histidyl-tRNA synthetase [Pseudonocardia sp. P1]
          Length = 435

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 132/430 (30%), Gaps = 41/430 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           GI  +LP       +V   +     R G   + +P  +   L+        D   KEM  
Sbjct: 24  GIPEYLPTDSAGFVHVRDTLAAAAARAGYGYIELPVFEDTGLYARGVGESTDVVSKEMYT 83

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR ++++   P     +      H    + LP         FR E RP+ G  R  + 
Sbjct: 84  FADRGERSVTLRPEGTAGVVRSVIEHNLDKQGLPVKLRYAGPFFRYE-RPQAGRYRQLQ- 141

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFIVL 213
            +         P             +  +        +     AE  P   +   EF+  
Sbjct: 142 QVGVEAIGVDDPALDAEVIAVADEGFKALGLTGYRLELTSLGDAECRPAYRERLQEFLSG 201

Query: 214 AD----TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            D    T E         +D   P           L   +   +A + A    H + L  
Sbjct: 202 LDLDEATRERAAINPLRVLDDKRPEVRAAMAGAPLLMDHLSDASAEHHAQVLAHLDDLGV 261

Query: 270 SLPENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKGADGK--DHYVQMGSYGIG 320
           +   N R+  RG++      F       G +  +     + G         +    +GIG
Sbjct: 262 AYTANPRM-VRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMATLGGPELSGVGFGIG 320

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK----IYARLSKVG 376
             R + A              +      +  + +        DA ++    + A L   G
Sbjct: 321 VDRTLMACAAEGVQPWTTARAE------VFGVPLG-------DAAKRRLVVVAAELRARG 367

Query: 377 CDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             V       G + G+    AD  G    +++G + + +  V +K   +G ++D+ L+ V
Sbjct: 368 VRVDLSYGGRGLK-GAM-KSADRSGARFALVLGDRDLENGTVGLKDLASGEQQDVPLDAV 425

Query: 435 INYASHRFSN 444
                   ++
Sbjct: 426 TGAVVTALAS 435


>gi|254820463|ref|ZP_05225464.1| histidyl-tRNA synthetase [Mycobacterium intracellulare ATCC 13950]
          Length = 420

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 64/391 (16%), Positives = 115/391 (29%), Gaps = 15/391 (3%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            R G  ++ +P  +   L+        D   KEM   ADR D+++   P     +     
Sbjct: 33  RRAGYGDIELPIFEDTALFARGVGESTDVVSKEMYTFADRGDRSVTLRPEGTAGVVRAVI 92

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            H      LP         FR E RP+ G  R  +  +         P            
Sbjct: 93  EHGLDRGALPVKLCYAGPFFRYE-RPQAGRYRQLQ-QVGVEAIGVDDPALDAEVIAVADA 150

Query: 180 SYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIV----LADTGETQVFCSKDFMDFPIP 233
            +  +        I    +    P   +L  EF+       +T           +D   P
Sbjct: 151 GFRSLGLDGFRLEITSLGDDSCRPAYRELLQEFLFGLSLDDETRRRAEINPLRVLDDKRP 210

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK 293
                  D   L   +      +  T   H + L      N R+  RG++      F   
Sbjct: 211 EVRAMTADAPVLLDHLSDAAKQHFDTVLAHLDALGVPYVINPRM-VRGLDYYTKTTFEFV 269

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           +    + +  G  G+   +     G     +   +              SV       + 
Sbjct: 270 HDGLGAQSGIGGGGRYDGLMRELGGQDLSGIGFGLGVDRTLLALRAEGKSVGTAARCEVF 329

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
                +  +     +  +L   G  V   + D G + G+    AD  G  + +++G + +
Sbjct: 330 GVPLSEQAKLRLAVLAGQLRSAGVRVDLAYGDRGLK-GAM-RAADRSGARVALVLGDRDI 387

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               V +K   TG +  ++ E V+     R 
Sbjct: 388 EAGTVGVKDLGTGEQSAVASETVVADVLARL 418


>gi|226366292|ref|YP_002784075.1| histidyl-tRNA synthetase [Rhodococcus opacus B4]
 gi|254782341|sp|C1B4E1|SYH_RHOOB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|226244782|dbj|BAH55130.1| histidyl-tRNA synthetase [Rhodococcus opacus B4]
          Length = 423

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/385 (15%), Positives = 109/385 (28%), Gaps = 15/385 (3%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   + +P  +   L+        D   KEM   ADR D+++   P     +      H
Sbjct: 38  AGYGHIELPIFEDTGLFARGVGESTDVVSKEMYTFADRGDRSVTLRPEGTAGVMRAVIEH 97

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                 LP         FR E RP+ G  R  +  +         P             +
Sbjct: 98  GLDRGQLPVKLSYAGPFFRYE-RPQAGRYRQLQ-QVGVEAIGVDDPALDAEVIAVADAGF 155

Query: 182 LRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVFCSK----DFMDFPIPSE 235
             +        I    +    P   +   EF+      E     ++      +D      
Sbjct: 156 RGLGLEGFRLEITSLGDDTCRPQYRERLQEFLFALPLDEETRRRAEINPLRVLDDKRKEV 215

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                D   +   +      +      H + L      N R+  RG++      F   + 
Sbjct: 216 REMTADAPLMLDHLSDTAKAHFDEVLAHLDALGVPYVVNPRM-VRGLDYYTKTTFEFVHD 274

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              + +  G  G+   +     G     +   +              +        +   
Sbjct: 275 GLGAQSGIGGGGRYDGLMAQLGGQPLSGIGFGLGVDRTVLALAAEGKTAGSTARCEVFGV 334

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSD 413
              +  +     I  +L   G  V         G +     AD  G  L +++G + +++
Sbjct: 335 PLGEEAKAKLVVIAQQLRAQGIRVDLAYGNR--GVKGAMKAADRSGAALALVLGDRDIAE 392

Query: 414 SKVEIKHRLTGIREDMSLEEVINYA 438
             V IK+  TG +E +S  +V+   
Sbjct: 393 GTVGIKNLATGDQESVSSADVLARV 417


>gi|116206210|ref|XP_001228914.1| hypothetical protein CHGG_02398 [Chaetomium globosum CBS 148.51]
 gi|88182995|gb|EAQ90463.1| hypothetical protein CHGG_02398 [Chaetomium globosum CBS 148.51]
          Length = 1620

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 6/142 (4%)

Query: 308  KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA------HDQVC 361
            +++   +     G  R++ +++E  +  +      +V    +++   K        +   
Sbjct: 1453 REYTPNVNEPSFGIGRILYSLLEQVYWYRPDDAARAVFSLPLAVAPNKVLIVPLYSNPQL 1512

Query: 362  RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                 K+ ARL K+G     D     IG + A  D LG PL V V  + + D  V ++ R
Sbjct: 1513 NPITHKLSARLRKMGITNIIDASSASIGKRCARNDELGIPLGVTVDFQTLRDGSVTLRER 1572

Query: 422  LTGIREDMSLEEVINYASHRFS 443
             +  +   S E+V+        
Sbjct: 1573 DSMFQVRGSEEDVVAAIKGLVE 1594


>gi|58038523|ref|YP_190487.1| histidyl-tRNA synthetase [Gluconobacter oxydans 621H]
 gi|81672761|sp|Q5FUR8|SYH_GLUOX RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|58000937|gb|AAW59831.1| Histidyl-tRNA synthetase [Gluconobacter oxydans 621H]
          Length = 415

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/391 (12%), Positives = 110/391 (28%), Gaps = 17/391 (4%)

Query: 58  REEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
           R      G  E S P  +   ++  +     D   KEM    DR  +++   P     + 
Sbjct: 29  RRVLRTYGFEEWSTPIFEDTRVFSRTLGETSDVVSKEMYTFEDRGGESITLRPEGTAAIC 88

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDLTPEGSKHSY 174
               ++  + ++LP   +     FR E   +    R R+F    A      +P     + 
Sbjct: 89  RALVTNGLT-QSLPQKVFYHGSMFRYERPQKG---RYRQFHQIGAELIGAESPLRDAETI 144

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                    +     +                  E +V            +  +      
Sbjct: 145 AMAQDILRELGLGDHVTLELNTLGDLA-SRQAWREALVAYFRDHADALSEESRVRLEANP 203

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG-IEVGHIFYFGTK 293
                        +++   A  A   +  + + +D L  + +      +E   I      
Sbjct: 204 LRILDSKSEQDRKLLDAAPAF-ADYLNDDSRQFWDGLRSSLQAFGVDFVENPRIVRGLDY 262

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS           G    V  G    G +  +      +    G I   ++    +  + 
Sbjct: 263 YSHTAFEFVTSKLGAQGTVLAGGRYEGLVEQMGGPAIPAIGWAGGIERLAMLLDSVPELP 322

Query: 354 IK-----AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
                    D+    A   I   L   G     +  G  +  +       G    +++G 
Sbjct: 323 AGIALVPMGDEAVLKAA-SIARVLRSAGLRAEIETRG-NMKKRMERVVKSGASHAIVLGD 380

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           + ++ + V+++   +  ++++ + ++    S
Sbjct: 381 EEIAKNIVQLRDLSSREQQEVPVADLARILS 411


>gi|306826462|ref|ZP_07459773.1| histidine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
 gi|304431321|gb|EFM34319.1| histidine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
          Length = 438

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 67/425 (15%), Positives = 132/425 (31%), Gaps = 38/425 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++ R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 25  LPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 84

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 85  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 141

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT-- 216
               F      +     +       +F +LG+K + +   S       +     L D   
Sbjct: 142 GVECFGAANPATD---VETIAMAYHLFEKLGIKDVTLHLNSLGSPESRAAYRQALIDYLT 198

Query: 217 ---GETQVFCSKDFMDFPIPSENTDFDDIIS--------LNSIVEQWTAPYAATSDVHNE 265
              G+      +   + P+   ++   +           L+ + E+  A + A  D+   
Sbjct: 199 PMRGQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVKDMLEA 258

Query: 266 KLFDSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                + +   V         IF F     G+  ++     +    G     +   +G G
Sbjct: 259 LNIPYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFG 318

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                  ++         I  +      +      +          ++   + + G    
Sbjct: 319 LGLERLLMVIEKQGITLPIETEMDVYLAVLGDGANSK-------ALELVQAIRRQGFTAE 371

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE-VINY-- 437
            D +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+ +IN+  
Sbjct: 372 RDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQEVEVSFEDMMINFAN 431

Query: 438 ASHRF 442
            S + 
Sbjct: 432 ISEQL 436


>gi|162139170|ref|YP_603425.2| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
          Length = 426

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 63/422 (14%), Positives = 120/422 (28%), Gaps = 32/422 (7%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++ R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 13  LPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 73  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 129

Query: 159 DAYSFDL-TPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG            I       
Sbjct: 130 GVECFGAANPATDVETIAMAYHLFEKLGIKDVTLHLNSLGSPESRAAYRQALIDYLTPMR 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    +   S+ + + E+  A + A  D+      
Sbjct: 190 DQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVQDMLEALDI 249

Query: 269 DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +   V         IF F     G+  ++     +    G     +   +G G   
Sbjct: 250 PYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               +I         I  +      +      +          ++   + + G     D 
Sbjct: 310 ERLLMIIEKQGITLPIETEMDIYLAVLGDGANSK-------ALELVQAIRRQGFTAERDY 362

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI---NYASH 440
           +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+++      S 
Sbjct: 363 LGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQEVEVSFEDMMTNFENISE 422

Query: 441 RF 442
           + 
Sbjct: 423 QL 424


>gi|156503280|ref|YP_001429345.1| histidyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|208780247|ref|ZP_03247589.1| histidyl-tRNA synthetase [Francisella novicida FTG]
 gi|254369907|ref|ZP_04985916.1| histidyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254375028|ref|ZP_04990508.1| histidyl-tRNA synthetase [Francisella novicida GA99-3548]
 gi|290954354|ref|ZP_06558975.1| histidyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312218|ref|ZP_06803018.1| histidyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|166227967|sp|A7NEI6|SYH_FRATF RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|151572746|gb|EDN38400.1| histidyl-tRNA synthetase [Francisella novicida GA99-3548]
 gi|156253883|gb|ABU62389.1| histidyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157122877|gb|EDO66994.1| histidyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|208743896|gb|EDZ90198.1| histidyl-tRNA synthetase [Francisella novicida FTG]
 gi|332678956|gb|AEE88085.1| Histidyl-tRNA synthetase [Francisella cf. novicida Fx1]
          Length = 421

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 61/418 (14%), Positives = 123/418 (29%), Gaps = 34/418 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LPL       + + ++   +R    E  +P ++ ++L+  S     D   KE     DRN
Sbjct: 14  LPLDSYKWQFLESKVKLILDRYNYSETRLPIVERSELFHRSVGESSDIVSKETYDFQDRN 73

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P        +   +  + R      +     FR E   +    R R+F     
Sbjct: 74  GDSLTLRPEGTAGCVRMVIENNLATRGQTQKLWYCGPMFRYERPQKG---RYRQFYQLGV 130

Query: 161 YSFDLT-----------------PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            ++                      G          S     +R       ++    P  
Sbjct: 131 EAYGFDGIAIDLEVIAIAWSLFKELGISEYVTLELNSLGSSLNRQEYTQALLQY-LKPYH 189

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            +L  + I   D    ++  SK      I +      D I  +  +          +   
Sbjct: 190 AELDEDSIKRLDKNPLRILDSKIEKTQKILANAPKLIDFIDHDLRLRFKQTCQYLDALGV 249

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGA 321
             KL ++L          +        G++ ++     + G   +          + IG 
Sbjct: 250 RYKLNENLVRGLDYYTGLVFEWTTDKLGSQSAICAGGRYDGLVENLGGQKTAAIGFAIGM 309

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++  + +           D       + ++            E I   L ++  D   
Sbjct: 310 ERLLLLLEDLGKLPNQDNACDVFFILDSAQLH------QSLAIVENIRQELPQLKID--M 361

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYA 438
           D       SQF  AD  G  + +I+G   + +    IK       ++ ++  E+IN+ 
Sbjct: 362 DLKFGSFKSQFKKADKSGAKVAIIIGQDELDNGFAGIKFLQQNEEQQQVAFNELINFL 419


>gi|21592545|gb|AAM64494.1| glycyl tRNA synthetase, putative [Arabidopsis thaliana]
          Length = 690

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 13/145 (8%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV---APFKISLINIK------ 355
              +     +     G  R++  + E     +     D       F   +  IK      
Sbjct: 525 EHQRVFTPSVIEPSFGIGRIIYCLYEHCFSTRPSKAGDEQLNLFRFPPLVAPIKCTVFPL 584

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +Q   +A + I   L+ VG     D  G  IG ++A  D LG P  + V S       
Sbjct: 585 VQNQQFEEAAKVISKELASVGISHKIDITGTSIGKRYARTDELGVPFAITVDSDT----S 640

Query: 416 VEIKHRLTGIREDMSLEEVINYASH 440
           V I+ R +  +  ++L+E  +  S 
Sbjct: 641 VTIRERDSKDQVRVTLKEAASVVSS 665



 Score = 51.3 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G++ + P G     NV +  R+        +E+  P +    +   SG  D +   M++
Sbjct: 102 AGLFDYGPPGCAIKSNVLSFWRQHFILEENMLEVDCPCVTPEVVLKASGHVDKFTDLMVK 161

Query: 96  LADRNDKAMIYGPTHEEVMT 115
             ++           ++  T
Sbjct: 162 D-EKTGTCYRADHLLKDYCT 180


>gi|56416461|ref|YP_153535.1| histidyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
 gi|81677670|sp|Q5PBP9|SYH_ANAMM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|56387693|gb|AAV86280.1| histidyl tRNA synthetase [Anaplasma marginale str. St. Maries]
          Length = 430

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/413 (14%), Positives = 122/413 (29%), Gaps = 38/413 (9%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLAD 98
            W          +  +  +   R G + +  P  +  D+++++     D  GKEM    D
Sbjct: 23  FWH---------IRDVAHDIGERYGFVPVETPIFEFQDVFLKTLGDSSDIIGKEMYSFPD 73

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           R    ++  P     +  +          LP   +     FR E   +    R R+F   
Sbjct: 74  RGGDVLVLRPELTAAVARMLICERL---TLPARLFTFGPVFRYERPQKC---RQRQFHQI 127

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           +   F              +     +  R  ++       +        +  +   +  E
Sbjct: 128 NYEHFGAGCTADAELMALAYDILGALNLRSEVQLEINSLGNQDSILGYRNSLLKYFEKHE 187

Query: 219 TQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL----- 271
             +     +     P+   ++     I++          Y   S++    +   L     
Sbjct: 188 HALSEDSRRRLQTNPLRILDSKDRGDIAILCGAPVIADFYDDESNMTFNGVMQQLDNLGI 247

Query: 272 ---PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
                 + V       G +F F T       A   G         MG    G        
Sbjct: 248 PYTVNPRLVRGLDYYCGTVFEFKTTSLGSQDAVIAGGRYDKLVASMG----GGDVPAVGF 303

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                    +        F ++ + +    +       +    L   G  V  D + E++
Sbjct: 304 AGGVERLASLAAYSHSTRFSVAFLPLG---EEAARCAMRSAYELRGRGIRVLCDGVVEKL 360

Query: 389 GSQF--AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             +     AD  G  L +I+G + ++  +V  +H  TG+++ +S+  + +Y S
Sbjct: 361 --KIGLKHADRSGVDLALILGDEEIAKGEVLCRHMDTGLQQTVSISNLGDYVS 411


>gi|309805189|ref|ZP_07699241.1| histidine--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
 gi|312871836|ref|ZP_07731924.1| histidine--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
 gi|312872922|ref|ZP_07732982.1| histidine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|312874202|ref|ZP_07734236.1| histidine--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|315653587|ref|ZP_07906507.1| histidine--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|308165423|gb|EFO67654.1| histidine--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
 gi|311090272|gb|EFQ48682.1| histidine--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|311091444|gb|EFQ49828.1| histidine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|311092778|gb|EFQ51134.1| histidine--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
 gi|315488949|gb|EFU78591.1| histidine--tRNA ligase [Lactobacillus iners ATCC 55195]
          Length = 428

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 64/422 (15%), Positives = 126/422 (29%), Gaps = 19/422 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP      D V  I +    +    E+  P  ++ +++  S     D   KEM  
Sbjct: 8   GTVDILPDTSYQWDKVENIAKNFFRKANYQEIRTPMFENYEIFSRSSGESSDVVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   +  +         P+  + I   FR E        R R
Sbjct: 68  FMDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYNVFYIASMFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF      +                   Y    + LG +++        +  
Sbjct: 125 EFHQIGVESFGSDNALADVETIVLAHDLLSTLGIKKYELHINSLGNEAVRTAYRQALVDY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVH 263
               +  +  D+           +D     +     +   +   ++  +   +       
Sbjct: 185 FTPIKDKLSDDSQRRLKTNPLRILDSKDEEDIEFVSNAPRIRDYLDDESKKNFEFIIKTL 244

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           +E   D + ++  V       G IF F     SL  S T     G+ +++     G    
Sbjct: 245 SELKIDYVLDDDLVRGLDYYTGVIFEFMVEDTSLWQSKTTILGGGRYNHLVEEFDGPKTP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E             +         I    +       +I   L K G  V +D
Sbjct: 305 AVGFGIGEERLMLVLKAQNPELLTDSNIDFYITNIGEETITKTVEIARELRKQGLKVQYD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              +++ +QF  AD       + +G + + ++ + IK    G     +++E+ N  +   
Sbjct: 365 VEQKKLKAQFKKADKAKAKYVITLGVQEIEENTLNIKRLSDGKSYAFNMDEIAN-VNDLL 423

Query: 443 SN 444
             
Sbjct: 424 QK 425


>gi|90961829|ref|YP_535745.1| histidyl-tRNA synthetase [Lactobacillus salivarius UCC118]
 gi|123086786|sp|Q1WTV0|SYH_LACS1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|90821023|gb|ABD99662.1| Histidyl-tRNA synthetase [Lactobacillus salivarius UCC118]
          Length = 431

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 67/414 (16%), Positives = 119/414 (28%), Gaps = 32/414 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DSYGKEMLRLADRNDKAMIYG 107
              V    RE   +    EM  P  +S +++   SG   D   KEM    D+ D+ +   
Sbjct: 20  WQYVEEKARELFKKYRYEEMRTPIFESFEVFSRTSGETSDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  +         PF  Y +   FR E        R REF      +F +
Sbjct: 80  PEGTAGVVRSFVENKLYGPEVQKPFKTYYMGPMFRYERPQSG---RLREFHQIGVEAFGV 136

Query: 166 TPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                      M           S     + LG            I      E  +  D+
Sbjct: 137 DNPTLDVEVMAMAVDLLKSFGLNSLRVAVNTLGDLETRNNYRQALIDYLEPFEAELSDDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            E         +D     +     +  S+ + + E     +     + N+   + + ++ 
Sbjct: 197 KERLHKNPLRVLDSKDEKDKEIVANAPSILDYLTEDAQKHFETVKSLLNDLGIEYVIDSN 256

Query: 276 RVSARGIEVGHIFY-------FGTKYSL-PMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            V         IF        F  K++       + G   +    Q    G G       
Sbjct: 257 MVRGLDYYNHTIFEIMSDSKAFNGKWTTVCAGGHYSGLVEQLGGPQTPGVGFGLGVERLL 316

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +I  + +    I         + +  +   D V      K+   L   G     D +  +
Sbjct: 317 LILDAEEDTLPIENP------LDVYVVGIGD-VTNAVTLKLVQNLRHQGFTADRDYLNRK 369

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              QF  A+ L     + +G   + + +  +K    G    + L +V N  +  
Sbjct: 370 PKGQFKSANRLNARFTLTIGETELQEQEANLKFMKNGNEISVKLADVENDFASL 423


>gi|259500577|ref|ZP_05743479.1| histidine-tRNA ligase [Lactobacillus iners DSM 13335]
 gi|302191268|ref|ZP_07267522.1| histidyl-tRNA synthetase [Lactobacillus iners AB-1]
 gi|309806600|ref|ZP_07700597.1| histidine--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|309807560|ref|ZP_07701512.1| histidine--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
 gi|325912619|ref|ZP_08175002.1| histidine--tRNA ligase [Lactobacillus iners UPII 60-B]
 gi|259167961|gb|EEW52456.1| histidine-tRNA ligase [Lactobacillus iners DSM 13335]
 gi|308167020|gb|EFO69202.1| histidine--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|308169166|gb|EFO71232.1| histidine--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
 gi|325478040|gb|EGC81169.1| histidine--tRNA ligase [Lactobacillus iners UPII 60-B]
          Length = 428

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 64/422 (15%), Positives = 126/422 (29%), Gaps = 19/422 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP      D V  I +    +    E+  P  ++ +++  S     D   KEM  
Sbjct: 8   GTVDILPDTSYQWDKVENIAKNFFRKANYQEIRTPMFENYEIFSRSSGESSDVVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   +  +         P+  + I   FR E        R R
Sbjct: 68  FMDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYNVFYIASMFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF      +                   Y    + LG +++        +  
Sbjct: 125 EFHQIGVESFGSDNALADVETIVLAHDLLSTLGIKKYELHINSLGNEAVRTAYRQALVDY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVH 263
               +  +  D+           +D     +     +   +   ++  +   +       
Sbjct: 185 FTPIKDKLSDDSQRRLKTNPLRILDSKDEEDIEFVSNAPRIRDYLDDESKKNFEFIIRTL 244

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           +E   D + ++  V       G IF F     SL  S T     G+ +++     G    
Sbjct: 245 SELKIDYVLDDDLVRGLDYYTGVIFEFMVEDTSLWQSKTTILGGGRYNHLVEEFDGPKTP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E             +         I    +       +I   L K G  V +D
Sbjct: 305 AVGFGIGEERLMLVLKAQNPELLTDSNIDFYITNIGEETITKTVEIARELRKQGLKVQYD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              +++ +QF  AD       + +G + + ++ + IK    G     +++E+ N  +   
Sbjct: 365 VEQKKLKAQFKKADKAKAKYVITLGVQEIEENTLNIKRLSDGKSYAFNMDEIAN-VNDLL 423

Query: 443 SN 444
             
Sbjct: 424 QK 425


>gi|167746630|ref|ZP_02418757.1| hypothetical protein ANACAC_01341 [Anaerostipes caccae DSM 14662]
 gi|167653590|gb|EDR97719.1| hypothetical protein ANACAC_01341 [Anaerostipes caccae DSM 14662]
          Length = 397

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/400 (13%), Positives = 126/400 (31%), Gaps = 23/400 (5%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +  + ++        E+  P  +   L+  S     D   KEM    D+ ++++   P  
Sbjct: 7   LENVFKDLCETYNIHEIITPVFEHTVLFQRSVGETTDVVQKEMYTFEDKGNRSITLKPEG 66

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLT 166
                  +  H       P   + I   FR E       R       EF+  ++   ++ 
Sbjct: 67  TAGAIRAYLEHGMQNEPQPVKMFYITPAFRYEKPQSGRLRQHHQFGIEFVGAESPLAEVE 126

Query: 167 PEGSKHSYNKMF--VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
                 ++             + +G  +         +     HE  +     E      
Sbjct: 127 LITLVTTFINKIGLSDAKLHINSIGCSNCRKDYNEALLAYLHRHEDKLCPTCRERMEKNP 186

Query: 225 KDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
              +D  +PS      D   +++ + E+    +     + +        +   V      
Sbjct: 187 LRVIDCKVPSCKEIIKDAPRTIDYLDEECREHFEELKSLLDSLNIPYEVDTGIVRGLDYY 246

Query: 284 VGHIFYF--GTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
              +F F  G  ++L     +            +    +G+G  R++  +       +  
Sbjct: 247 TKTVFEFVNGEGFTLCGGGRYDNLVHEIDGKASMPSVGFGMGVERILFFL------EEEG 300

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
               +  P  + +  +       +    +I + L   G  V  D +G  + +Q   A+ L
Sbjct: 301 AELPAGRPLNLYVGILGK---EAKARAYEIVSGLRMEGFKVETDYLGRGVKAQMKYANKL 357

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
                +I+G   + ++K  +K+  +G   ++SL+++ N  
Sbjct: 358 RAQNTIIIGENELKENKGRLKNMESGEEIEISLDDIKNAL 397


>gi|50303953|ref|XP_451926.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641058|emb|CAH02319.1| KLLA0B08932p [Kluyveromyces lactis]
          Length = 663

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 84/289 (29%), Gaps = 19/289 (6%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                     +         +     +                 +  + + E +V+ +  
Sbjct: 363 MANEMAHYAADCWDAELQTSYGWIECVGCADRSAY------DLTVHSNKTKEKLVVREAL 416

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           ET +  +K         +             VE   A   A S    E     L ++ ++
Sbjct: 417 ETPIEVTK---WEATLVKKLFGPKFRKDAPKVE---ARLLAFSQEELESYSAQLKKDGKI 470

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + +   +        K       T      ++    +     G  R++ ++ E S   + 
Sbjct: 471 TLKVEGMEGDVEVDDKMVSIEKVT-NTEHIREFVPNVIEPSFGIGRIIYSIFEHSFWSRP 529

Query: 338 IIWPDSVAPFKISLINIKA------HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                +V  F   +   K       ++        ++   L K       D+ G  IG +
Sbjct: 530 EDTARAVLSFPPLVAPTKVLLVPLLNNPELSKITAQVSQILRKEQIPFKVDESGVSIGKR 589

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +A  D LG P  V +    V+D  + ++ R +  +   S+ +VI     
Sbjct: 590 YARNDELGTPFGVTIDFDSVTDGSITLRERDSTKQVRGSVADVIKAIRE 638



 Score = 47.4 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     N+  + R+        +E+    L   ++   SG  D +   M +
Sbjct: 41  SGLYDYGPPGCSFQANIVDVWRKHFVLEEDMLEVDCTMLTPYEVLKTSGHVDKFSDWMCK 100


>gi|18397278|ref|NP_564337.1| glycyl-tRNA synthetase / glycine--tRNA ligase [Arabidopsis
           thaliana]
 gi|3334349|sp|O23627|SYGM1_ARATH RecName: Full=Glycyl-tRNA synthetase 1, mitochondrial; AltName:
           Full=Diadenosine tetraphosphate synthetase; Short=AP-4-A
           synthetase; AltName: Full=Glycine--tRNA ligase 1;
           Short=GlyRS 1; Flags: Precursor
 gi|9972358|gb|AAG10608.1|AC008030_8 glycyl-tRNA synthetase [Arabidopsis thaliana]
 gi|2564215|emb|CAA05162.1| glycyl-tRNA synthetase [Arabidopsis thaliana]
 gi|332193024|gb|AEE31145.1| glycyl-tRNA synthetase 1 [Arabidopsis thaliana]
          Length = 729

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 13/145 (8%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV---APFKISLINIK------ 355
              +     +     G  R++  + E     +     D       F   +  IK      
Sbjct: 564 EHQRVFTPSVIEPSFGIGRIIYCLYEHCFSTRPSKAGDEQLNLFRFPPLVAPIKCTVFPL 623

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +Q   +  + I   L+ VG     D  G  IG ++A  D LG P  + V S       
Sbjct: 624 VQNQQFEEVAKVISKELASVGISHKIDITGTSIGKRYARTDELGVPFAITVDSDT----S 679

Query: 416 VEIKHRLTGIREDMSLEEVINYASH 440
           V I+ R +  +  ++L+E  +  S 
Sbjct: 680 VTIRERDSKDQVRVTLKEAASVVSS 704



 Score = 51.3 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G++ + P G     NV +  R+        +E+  P +    +   SG  D +   M++
Sbjct: 141 AGLFDYGPPGCAIKSNVLSFWRQHFILEENMLEVDCPCVTPEVVLKASGHVDKFTDLMVK 200

Query: 96  LADRNDKAMIYGPTHEEVMT 115
             ++           ++  T
Sbjct: 201 D-EKTGTCYRADHLLKDYCT 219


>gi|115315426|ref|YP_764149.1| histidyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|122324588|sp|Q0BK72|SYH_FRATO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|115130325|gb|ABI83512.1| histidine--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
          Length = 421

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 61/418 (14%), Positives = 124/418 (29%), Gaps = 34/418 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LPL       + + ++   +R    E  +P ++ ++L+  S     D   KE     DRN
Sbjct: 14  LPLDSYKWQFLESKVKLILDRYNYSETRLPIVERSELFHRSVGESSDIVSKETYDFQDRN 73

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P        +   +  + R      +     FR E   +    R R+F     
Sbjct: 74  GDSLTLRPEGTAGCVRMVIENNLATRGQTQKLWYCGPMFRYERPQKG---RYRQFYQLGV 130

Query: 161 YSFDLT-----------------PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            ++                      G          S     +R       ++    P  
Sbjct: 131 EAYGFDGIAIDLEVIAIAWSLFKELGISEYVTLELNSLGSSLNRQEYTQALLQY-LKPYH 189

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            +L  + I   D    ++  SK      I +      D I  +  +          +   
Sbjct: 190 AELDEDSIKRLDKNPLRILDSKIEKTQKILANAPKLIDFIDHDLRLRFKQTCQYLDALGV 249

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGA 321
             KL ++L          +        G++ ++     + G   +     +    + IG 
Sbjct: 250 RYKLNENLVRGLDYYTGLVFEWTTDKLGSQSAICAGGRYDGLVENLGGQKIAAIGFAIGM 309

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R++  + +           D       + ++            E I   L ++  D   
Sbjct: 310 ERLLLLLEDLGKLPNQDNACDVFFILDSAQLH------QSLAIVENIRQELPQLKID--M 361

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYA 438
           D       SQF  AD  G  + +I+G   + +    IK       ++ ++  E+IN+ 
Sbjct: 362 DLKFGSFKSQFKKADKSGAKVAIIIGQDELDNGFAGIKFLQQNEEQQQVAFNELINFL 419


>gi|269987005|gb|EEZ93280.1| histidyl-tRNA synthetase [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 410

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/410 (13%), Positives = 117/410 (28%), Gaps = 38/410 (9%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMIYGPT 109
             + +I R+     G   +  P+ +   L+  +SG       ++    D+  + +   P 
Sbjct: 21  QALESI-RKSYELFGFEPIETPSFEYLSLFTNKSG--PEIESQLYSFEDKKGEKLALRP- 76

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
            E  ++ +           P   Y I   +R E   +    R REF+  D   F      
Sbjct: 77  -EHTISKLRVVSGNKSLVFPLRAYSIGNVWRYEDTKKG---RWREFIQADIDIFGSADIK 132

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH--------------EFIVLAD 215
                            RLG+++  +   +  I   L                E   +  
Sbjct: 133 YDSEIIACIDFA---IKRLGIENYKINVSNRKILTSLMESLKVEVEKIVQVLREIDKVHK 189

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATSDVHNEKLFDSLPEN 274
            G  +V      +     +E             +E      Y  +    N  +     + 
Sbjct: 190 VGLDEVIKRISELIGETKAEKVRDYLNGKEIPGIEGIKDVEYLISDLKKNYGIEGVYFDR 249

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
             V  +    G IF F  +++         A G  +      +         A+      
Sbjct: 250 SLVRGQDYYDGSIFEF--EFTEGELKGVVLAGGGRYDKISMKFDSDFPISGGAIGFDVIM 307

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC--DVFWDDMGEQIGSQF 392
              +    +     + ++++        +   KI A L K G   D+  +D     G   
Sbjct: 308 EVLVSNYKNKFYKTLCVLSVDD-----LETSRKIAASLRKEGLVTDIILEDTPLSKG--L 360

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              +       +IVG + + D+ V ++   +       L+ ++    +  
Sbjct: 361 NYCNSKKIKYAIIVGKRDLKDNLVTVRDLESKREMKFKLDSLVEEIKNLI 410


>gi|219116973|ref|XP_002179281.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409172|gb|EEC49104.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 702

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 68/184 (36%), Gaps = 2/184 (1%)

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
             E +   L  + + +  G E+       TK    +          +    MG      +
Sbjct: 476 DFEPIATKLENDGKTTVEGFEITKEMMTWTKQKKTVHEIKFTPSVIEPSFGMGRILYSLL 535

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                  ES      + +   VAP K +++ I ++ + C +  + I   L         D
Sbjct: 536 EHSFYQRESDEQRVVMRFTPQVAPEKCAVLPISSNPE-CNEIVDDIARDLMDSDLATRVD 594

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
                IG +++ +D LG P  V V    ++D  V ++ R + ++  +   + INY   + 
Sbjct: 595 KSTAAIGRRYSRSDELGIPFAVTVDFDTLNDGTVTLRERDSTVQVRLPKND-INYLLFQI 653

Query: 443 SNNR 446
            ++R
Sbjct: 654 VHSR 657


>gi|15292923|gb|AAK92832.1| putative glycyl tRNA synthetase [Arabidopsis thaliana]
          Length = 729

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 13/145 (8%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV---APFKISLINIK------ 355
              +     +     G  R++  + E     +     D       F   +  IK      
Sbjct: 564 EHQRVFTPSVIEPSFGIGRIIYCLYEHCFSTRPSKAGDEQLNLFRFPPLVAPIKCTVFPL 623

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
             +Q   +  + I   L+ VG     D  G  IG ++A  D LG P  + V S       
Sbjct: 624 VQNQQFEEVAKVISKELASVGISHKIDITGTSIGKRYARTDELGVPFAITVDSDT----S 679

Query: 416 VEIKHRLTGIREDMSLEEVINYASH 440
           V I+ R +  +  ++L+E  +  S 
Sbjct: 680 VTIRERDSKDQVRVTLKEAASVVSS 704



 Score = 51.3 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G++ + P G     NV +  R+        +E+  P +    +   SG  D +   M++
Sbjct: 141 AGLFDYGPPGCAIKSNVLSFWRQHFILEENMLEVDCPCVTPEVVLKASGHVDKFTDLMVK 200

Query: 96  LADRNDKAMIYGPTHEEVMT 115
             ++           ++  T
Sbjct: 201 D-EKTGTCYRADHLLKDYCT 219


>gi|33152173|ref|NP_873526.1| histidyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
 gi|39932105|sp|Q7VME1|SYH_HAEDU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|33148395|gb|AAP95915.1| histidyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
          Length = 423

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/410 (13%), Positives = 119/410 (29%), Gaps = 23/410 (5%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               V + +R      G  E+ +P ++S  L+  + G   D   KEM    D  D+ +  
Sbjct: 21  LWQWVESNVRNVLASYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDN-DEQLTL 79

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   Y N    +Y +   FR E   +    +  +  ++     +  
Sbjct: 80  RPEGTAGCVRAAIQHGWIYNNEQRLWY-MGPMFRHERPQKGRYRQFHQAGVEVFGIANPE 138

Query: 167 PEGSKHSYNKMFVSYLRIFHR-------LGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
            +             L I          +G  +      +  +    +H  ++  +  E 
Sbjct: 139 IDAELILLTARLWQALGIEQHLSLQLNSIGSLAARANYRAALVDFLANHTALMNDEEKER 198

Query: 220 QVFCSKDFMDFPIPSENTDFDDI-ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
            V      +D    +     +D    L+ + E+    +A    + +          K V 
Sbjct: 199 LVKNPLRILDTKNQALQAVLNDAPKLLDYLDEESRQHFAQLCQLLDAMGIRYEVNPKLVR 258

Query: 279 ARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                   +F       G++ ++     + G   +         G         ++    
Sbjct: 259 GLDYYNKTVFEWVTSALGSQGTVCGGGRYDGLVEQLGGHATQGVGFAIGLERLVLLVQEV 318

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
           +    +          +  N            E+I   L +    V     G     QF 
Sbjct: 319 NKTMSLPKAVDIYLVYAGDNTTLK---AFQIAEQIRNALPQ--LRVMTHCSGGNFKKQFK 373

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYASHRF 442
            AD +   + +++G   ++   + +K    +  +  +   +++   S RF
Sbjct: 374 RADKVEAKIALVIGESELATQTIVLKELQNSSEQISIDQADLLAELSKRF 423


>gi|209560240|ref|YP_002286712.1| histidyl-tRNA synthetase [Streptococcus pyogenes NZ131]
 gi|238064858|sp|B5XJ83|SYH_STRPZ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|209541441|gb|ACI62017.1| Histidyl-tRNA synthetase [Streptococcus pyogenes NZ131]
          Length = 426

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/417 (14%), Positives = 120/417 (28%), Gaps = 29/417 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++ R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 13  LPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 73  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 129

Query: 159 DAYSFDL-TPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG            I       
Sbjct: 130 GVECFGAANPATDVETIAMAYHLFEKLGIKDVTLHLNSLGSPESRAAYRQALIDYLTPMR 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    +   S+ + + E+  A + A  D+      
Sbjct: 190 DQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVKDMLEALDI 249

Query: 269 DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +   V         IF F     G+  ++     +    G     +   +G G   
Sbjct: 250 PYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               +I         I  +      +      +          ++   + + G     D 
Sbjct: 310 ERLLMIIEKQGITLPIETEMDVYLAVLGDGANSK-------ALELVQAIRRQGFTAERDY 362

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+++   ++
Sbjct: 363 LGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQEVEVSFEDMMTNFAN 419


>gi|327311816|ref|YP_004338713.1| glycyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
 gi|326948295|gb|AEA13401.1| glycyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
          Length = 588

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 6/150 (4%)

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE----SSHDGKGIIWPDSVAPF 347
           T+  + +    +  D +     +     G  R++  V+E       D K +  P  +AP 
Sbjct: 416 TRDMVFLKREVRRTDVEKFIPHVVEPSFGLDRILYVVLESAAVVEDDRKYLRLPPDIAPI 475

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
              ++ I             +  RL + G    +DD G  IGS++A  D +G P+ V + 
Sbjct: 476 TACILPIVKRRDYV-AIGVDLARRLWRAGITALYDDEG-TIGSRYAECDEIGTPIAVTID 533

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
                D+ V I+ R +  +  + + +V+++
Sbjct: 534 EMTPKDNTVTIRDRDSRRQIRIDIGKVVDF 563



 Score = 51.3 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 6/80 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAI----EMSVPTLQSADLWVESGRYDSYGKEM 93
           G Y + PLG     N+    R             E+  P +    ++  SG  + +   +
Sbjct: 29  GFYDYGPLGTLTRRNIVEKWRRTFI-LPYQDIMIEIETPVIMPEAVFEASGHLEHFTDYV 87

Query: 94  LRLADRNDKAMIYGPTHEEV 113
           +       +        E+V
Sbjct: 88  VTCQKC-GRKFRTDHLIEDV 106


>gi|311105360|ref|YP_003978213.1| histidyl-tRNA synthetase [Achromobacter xylosoxidans A8]
 gi|310760049|gb|ADP15498.1| histidyl-tRNA synthetase [Achromobacter xylosoxidans A8]
          Length = 431

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 61/436 (13%), Positives = 113/436 (25%), Gaps = 39/436 (8%)

Query: 32  IHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-D 87
             + +   G+   LP      +    I+R      G   +  P L+   L+    G   D
Sbjct: 8   FQKVAAIRGMNDLLPGASARWEQFEEIVRGWLRGYGYRNVRTPVLEHTRLFARGIGEVTD 67

Query: 88  SYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
              KEM   AD  D+  +   P     +      H   Y   P   Y I   FR E   R
Sbjct: 68  IVEKEMYTFADGPDEELLTMRPEMTAGIVRASIEHNLLYDR-PQRVYSIGPVFRRERPQR 126

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL------GLKSIPMRAESG 200
               +  +  ++         +             L +          G  +      + 
Sbjct: 127 GRYRQFHQIDVEALGFAGPDVDAELIVMLARLWKLLGLTDVRLELNSLGQPAERAAHRAA 186

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD------DIISLNSIVEQWTA 254
            I     H  I+  D            +D   P+     D      D +   S       
Sbjct: 187 LIEHLEKHRDILDEDGQRRMYSNPLRVLDTKNPAMQEMADSAPRLFDFLGEESRAHFDGM 246

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYV 312
               T      +L   L          +        G + ++     + G          
Sbjct: 247 CQRLTDAGIEYRLNPRLVRGLDYYNLTVFEWVTDRLGAQGTVCGGGRYDGLIELLGGKSA 306

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
               + IG  R++                  V       + +    +  +    ++   L
Sbjct: 307 PAVGFAIGMERLLDLW----------EQSVQVEQQAECDVYVVHQGEEAQRLAARVGEDL 356

Query: 373 SKVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED-- 428
              G  V         G +  F  AD  G  + VI+G+  V+     +K      + +  
Sbjct: 357 RDAGLSVVV--HAGSAGFKSQFKRADASGARVAVILGADEVAAQTASVKFLRADAQGETA 414

Query: 429 ---MSLEEVINYASHR 441
              + L  + +  +++
Sbjct: 415 QQQVPLAGLADVLNNK 430


>gi|256384437|gb|ACU79007.1| histidine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385270|gb|ACU79839.1| histidine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455715|gb|ADH21950.1| histidine--tRNA ligase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 414

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/411 (15%), Positives = 129/411 (31%), Gaps = 30/411 (7%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAM 104
            K  + V   ++E  ++    E+  P  +S +L++ S     D   KEM    D+ ++++
Sbjct: 16  AKLWNKVETKLKEILDQFNYSEIRTPMFESKELFIRSIGSTTDIVSKEMYEFVDKKNRSL 75

Query: 105 IYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           +  P     +   +  + +    NLP   Y I   FR E        R R+F       F
Sbjct: 76  VLKPEGTASVVRAVIENKLYKEENLPLKVYYISPMFRYERPQNG---RYRQFHQLGIEVF 132

Query: 164 DLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
                       N       +      +K       +G    D   E        +    
Sbjct: 133 GSDSIQQDYEVLNIATKIINQFKLNENIKIYTNFLITGKNREDYILELKKYLSDFKLCND 192

Query: 223 CSKDFMDFPIPSENTDFDDI------ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           C+      P+   +   DD          + + ++    Y  T ++  +     + ++K 
Sbjct: 193 CNTRLEKNPLRVLDCKIDDKQFKNVPSMQDFLTKEQKTRYDQTLELFKKTNISVIHDDKL 252

Query: 277 VSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           V       G IF         + ++     +     +   + + + G G        I  
Sbjct: 253 VRGLDYYTGFIFEIKYLNNNNEQTIIAGGRYNNLVNEIGNINLAACGFGMGLERFINIIK 312

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG---EQI 388
             +   +    ++  + I +      D +  +  ++I      +G      D       +
Sbjct: 313 EQNSSLVNQKTNIDLYTICI------DDLAIELNQQILDLTRSIGLKA---DSNYYHLSL 363

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            S    AD L     +I+GS     ++  IK ++   +   +L + I Y  
Sbjct: 364 KSALKKADKLNPKYVIILGSNEAKTNEFIIKDQINKTQIKTTLTKFIKYLK 414


>gi|326692515|ref|ZP_08229520.1| histidyl-tRNA synthetase [Leuconostoc argentinum KCTC 3773]
          Length = 434

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 66/422 (15%), Positives = 119/422 (28%), Gaps = 17/422 (4%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-- 83
           M +        KG    LP        V  + R         E+  P  ++ +++  S  
Sbjct: 1   MAKATFQRP--KGTADLLPEQTAQWQYVENLARVLFGDYNFKEVRTPLFENFEVFSRSAG 58

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRD 141
              D   KEM    D+ D+ +   P     +   F  +         P+  + I   FR 
Sbjct: 59  DTSDVVTKEMYDFHDKGDRHVALRPEGTAGIVRAFVENKLYGPEFDKPYKAFYIGPMFRY 118

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF------VSYLRIFHRLGLKSIPM 195
           E        +  +   +   S     +    +    F       +     + LG K+   
Sbjct: 119 ERPQAGRFRQFHQIGAEAFGSSSPALDVEIIAMLINFFQTLGLDNLKVAINSLGDKATRD 178

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                 I     H   + AD+           +D   P +     D   +   +      
Sbjct: 179 AYRQALIDYLKPHFDELSADSQARLEKNPLRVLDSKDPRDQVFVADAPVILDYLSDEAKA 238

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFY-FGTKYSLPMSATFKGADGKDHYV 312
           +          L     E      RG++     IF       +L  +AT  G       V
Sbjct: 239 HWEKVQALLTALDIPF-EVDPTMVRGLDYYNDTIFEIMTVDDTLKGAATIAGGGRYSGLV 297

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
                           +E             + P  +    +   D     A  +I   +
Sbjct: 298 SEFGGPETPGVGFGIGVERLVSLLEAKGLKPIEPEGLDFYVVNIGDDTEV-AAMQIVQAI 356

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G     D +G    +QF  AD       V +G + ++D   +IK+  TG ++ + L 
Sbjct: 357 RGFGYVAERDYLGRSAKAQFKSADRYQSKYVVTIGEQELADHVAKIKNMATGQQQTVKLA 416

Query: 433 EV 434
           ++
Sbjct: 417 DL 418


>gi|317471458|ref|ZP_07930810.1| histidyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
 gi|316901073|gb|EFV23035.1| histidyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
          Length = 413

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/400 (13%), Positives = 126/400 (31%), Gaps = 23/400 (5%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +  + ++        E+  P  +   L+  S     D   KEM    D+ ++++   P  
Sbjct: 23  LENVFKDLCETYNIHEIITPVFEHTVLFQRSVGETTDVVQKEMYTFEDKGNRSITLKPEG 82

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLT 166
                  +  H       P   + I   FR E       R       EF+  ++   ++ 
Sbjct: 83  TAGAIRAYLEHGMQNEPQPVKMFYITPAFRYEKPQSGRLRQHHQFGIEFVGAESPLAEVE 142

Query: 167 PEGSKHSYNKMF--VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
                 ++             + +G  +         +     HE  +     E      
Sbjct: 143 LITLVTTFINKIGLSDAKLHINSIGCSNCRKDYNEALLAYLHRHEDKLCPTCRERMEKNP 202

Query: 225 KDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
              +D  +PS      D   +++ + E+    +     + +        +   V      
Sbjct: 203 LRVIDCKVPSCKEIIKDAPRTIDYLDEECREHFEELKSLLDSLNIPYEVDTGIVRGLDYY 262

Query: 284 VGHIFYF--GTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
              +F F  G  ++L     +            +    +G+G  R++  +       +  
Sbjct: 263 TKTVFEFVNGEGFTLCGGGRYDNLVHEIDGKASMPSVGFGMGVERILFFL------EEEG 316

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
               +  P  + +  +       +    +I + L   G  V  D +G  + +Q   A+ L
Sbjct: 317 AELPAGRPLNLYVGILGK---EAKARAYEIVSGLRMEGFKVETDYLGRGVKAQMKYANKL 373

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
                +I+G   + ++K  +K+  +G   ++SL+++ N  
Sbjct: 374 RAQNTIIIGENELKENKGRLKNMESGEEIEISLDDIKNAL 413


>gi|254412359|ref|ZP_05026133.1| histidyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196180669|gb|EDX75659.1| histidyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 462

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 77/219 (35%), Gaps = 7/219 (3%)

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           D  +   N   +D      +           + V N  + D +       ARG++     
Sbjct: 247 DEVLAQLNAMLEDKPDAQVLKTGIAELETVITGVRNLGVSDRVFCIDLSIARGLDYYTGT 306

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYG--IGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            + T      +     + G+   +     G  +  + +   +             +S + 
Sbjct: 307 VYETTLVGHEALGSICSGGRYEELVGMFVGDKMPGVGISIGLTRLMSRLIQAGILESFSS 366

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQV 404
               ++ +     +      ++  +L + G      +D+    +G Q   AD  G PL V
Sbjct: 367 TPAQVMVVNMQSDLMPLY-LEVSQKLRQAGISTITSFDER--SVGKQLQQADKRGIPLCV 423

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           I+GS+  +  K  +K+  TG +  +++E++ N  S + +
Sbjct: 424 IIGSEEAAAQKCGLKNMRTGEQIAVNIEQLANEVSKQLA 462



 Score = 41.3 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           G   +LP  ++    +   IR+   R G   +  P ++  ++    G
Sbjct: 13 SGFPEFLPGEKRLEMYLIDTIRQVFERYGFTPIETPAVERLEVLQAKG 60


>gi|305681034|ref|ZP_07403841.1| histidine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
 gi|305659239|gb|EFM48739.1| histidine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
          Length = 426

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/417 (13%), Positives = 116/417 (27%), Gaps = 27/417 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+  ++P        V           G   + +P  +   L+        D   KEM  
Sbjct: 14  GVPDYVPPASAQFIAVRDTFAHHIRLAGYEHIELPIFEDTTLFARGVGESTDVVSKEMYT 73

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR  +++   P     +      H      LP         FR E RP+ G  R  + 
Sbjct: 74  FADRGGRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLGYYGPFFRYE-RPQAGRYRQLQ- 131

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFI-- 211
            +         P             +  I  +     +    +    P   +   EF+  
Sbjct: 132 QVGVEAIGVDDPTLDAEVIALADRCFSSIGLKDYRLELTSLGDATCRPAYREKLQEFLLK 191

Query: 212 ---VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                A     ++   +   D     +    D  + L+ +  Q    + A +   ++   
Sbjct: 192 LPLDDATRHRAEINPLRVLDDKRPEVQELTADAPLMLDYLSPQAREHFEAVTGCLDDLGV 251

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             +   + V          F       G +  +     + G             GIG   
Sbjct: 252 TYVINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLM--AQLGGQELSGIGFGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--W 381
            V   + +       +   +        +   A  ++       +   L   G      +
Sbjct: 310 GVDRALLALEAEHTQVADPARVDVYGVALGAPAKRRLLT-----LINELRAAGIRADMSY 364

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            D G + G+    AD  G    +++G + +    V +K+ +   + D+ L +V    
Sbjct: 365 GDRGLK-GAM-KGADRAGARFALVLGDRELDAGIVAVKNLVDHTQTDVPLGQVAETL 419


>gi|94548835|gb|ABF38881.1| Histidyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
          Length = 438

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 63/422 (14%), Positives = 120/422 (28%), Gaps = 32/422 (7%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++ R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 25  LPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 84

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 85  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 141

Query: 159 DAYSFDL-TPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG            I       
Sbjct: 142 GVECFGAANPATDVETIAMAYHLFEKLGIKDVTLHLNSLGSPESRAAYRQALIDYLTPMR 201

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    +   S+ + + E+  A + A  D+      
Sbjct: 202 DQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVQDMLEALDI 261

Query: 269 DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +   V         IF F     G+  ++     +    G     +   +G G   
Sbjct: 262 PYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGL 321

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               +I         I  +      +      +          ++   + + G     D 
Sbjct: 322 ERLLMIIEKQGITLPIETEMDIYLAVLGDGANSK-------ALELVQAIRRQGFTAERDY 374

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI---NYASH 440
           +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+++      S 
Sbjct: 375 LGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQEVEVSFEDMMTNFENISE 434

Query: 441 RF 442
           + 
Sbjct: 435 QL 436


>gi|15675899|ref|NP_270073.1| histidyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71911627|ref|YP_283177.1| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|32130143|sp|Q99XK9|SYH_STRP1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|13623136|gb|AAK34794.1| putative histidine-tRNA ligase [Streptococcus pyogenes M1 GAS]
 gi|71854409|gb|AAZ52432.1| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
          Length = 426

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/417 (14%), Positives = 120/417 (28%), Gaps = 29/417 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++ R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 13  LPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 73  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 129

Query: 159 DAYSFDL-TPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG            I       
Sbjct: 130 GVECFGAANPATDVETIAMAYHLFEKLGIKDVTLHLNSLGSPESRAAYRQALIDYLTPMR 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    +   S+ + + E+  A + A  D+      
Sbjct: 190 DQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVKDMLEALDI 249

Query: 269 DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +   V         IF F     G+  ++     +    G     +   +G G   
Sbjct: 250 PYVIDTNMVRGLDYYSHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               +I         I  +      +      +          ++   + + G     D 
Sbjct: 310 ERLLMIIEKQGITLPIETEMDIYLAVLGDGANSK-------ALELVQAIRRQGFTAERDY 362

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+++   ++
Sbjct: 363 LGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQEVEVSFEDMMTNFAN 419


>gi|330807648|ref|YP_004352110.1| histidine--tRNA ligase,(histidyl-tRNA synthetase) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375756|gb|AEA67106.1| Histidine--tRNA ligase,(Histidyl-tRNA synthetase) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 429

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/419 (13%), Positives = 125/419 (29%), Gaps = 22/419 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP            +    +  G  ++ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRYFEGTVARLLDNYGYRQIRMPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H  +        + +   FR E RP+ G  R    
Sbjct: 70  FDDRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYVGPMFRHE-RPQKGRYRQFHQ 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR--AESGPIGGDLSHEFIVL 213
           +  + ++ +     ++       +             +     +ES     +   EF+  
Sbjct: 129 IGLEVFNLEGPDIDAELIVMTWRLWGELGLRDAVKLELNSLGTSESRGRYREALVEFLSA 188

Query: 214 A------DTGETQVFCSKDFMDFP-IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
                  D+           +D     ++    D     + + ++  A +       +  
Sbjct: 189 HLDKLDEDSQRRLKTNPLRVLDTKNAETQAVLVDAPKMADYLDDESRAHFEGLKARLDAV 248

Query: 267 LFDSLPENKRVSARGIEVGHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               +   K V         +F       G + ++     + G    +      + G+G 
Sbjct: 249 GIPYVINPKLVRGLDYYSKTVFEWVTDKLGAQGTVCAGGRYDGL--VEQMGGKPTPGVGF 306

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
              +  ++        +    +           +A +       E+I  +L      +  
Sbjct: 307 AMGIERLVLMLEALDKVPEELARQVDVYLCAFGEAAELAALSLSERIRDQLP--NLRLQI 364

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYAS 439
           +       SQF  AD  G    +I+G   ++   V  K  R  G ++ ++ + +  + +
Sbjct: 365 NAGAGSFKSQFKKADKSGALYALILGDDELAQQVVGFKPLRGQGEQQSIAWDALAAHLA 423


>gi|145613850|ref|XP_363396.2| hypothetical protein MGG_01322 [Magnaporthe oryzae 70-15]
 gi|145020862|gb|EDK04991.1| hypothetical protein MGG_01322 [Magnaporthe oryzae 70-15]
          Length = 367

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/329 (15%), Positives = 97/329 (29%), Gaps = 40/329 (12%)

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR-FGVMRSREFL 156
           D         P +      IF S ++SYR+LP  +       R+E+     G+ R R F 
Sbjct: 17  DAEADEYGLKPMNCPGHCLIFASQLRSYRDLPIRYADFSPLHRNEVSGALSGLTRVRRFH 76

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             D + F   P   +    +        +  L L    +   + P               
Sbjct: 77  QDDGHIFCR-PSQIEEEIRQTLSFVKTTYDTLKLGPYRLVLSTRP--------------- 120

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            E          D    +     D +    ++     A Y    D+    L DS  +  +
Sbjct: 121 -EDHYIGELAEWDQAETALKAALDSLGERWTLNPGDGAFYGPKIDII---LQDSDGKEHQ 176

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH--- 333
            +   ++    F    ++ L   A     +G  +   +    +   R V   +E      
Sbjct: 177 TATVQLD----FQLPKRFELEYQAP-PPENGDANATALLERPVMIHRAVLGSVERLMALL 231

Query: 334 -DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--SKVG-------CDVFWDD 383
            +     WP  + P ++ ++ +             +  +L   + G         +  DD
Sbjct: 232 IEHYNGKWPFWLNPRQVMVVTVNDT-ARVVAKAFAVRNQLLGQEEGEVAASSQLAIDIDD 290

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
               +  +   A   G+   V VG+  V 
Sbjct: 291 SARSLPLKIREAKSKGYGAIVTVGNHEVD 319


>gi|110597610|ref|ZP_01385895.1| histidyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
 gi|110340730|gb|EAT59207.1| histidyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
          Length = 429

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/411 (14%), Positives = 111/411 (27%), Gaps = 30/411 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRL-ADRNDKAMIY 106
              V  +I    +  G  E+  P  +  +L+        D  GKEM     D N +++  
Sbjct: 21  WKYVEGVIHTVASLYGFSEIRTPVFEYTELFQRGIGSTTDIVGKEMFSFLPDPNGRSITL 80

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +                  Y I   FR E        +  +F          T
Sbjct: 81  RPEMTAGVMRAALQKNILSAAPVHKLYYIGELFRKERPQAGRQRQFSQF--GAELLGVST 138

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL---------SHEFIVLA--- 214
           P         M   +  +  R     I    +S                 H+ +  +   
Sbjct: 139 PAAVAEVITLMMQVFESLGLRNLRLRINSLGDSDDRFRYREALKTYFAPFHDRLDDSSKE 198

Query: 215 --DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
             +    ++  SK+     I +      D +S+ S+ +     Y         ++   L 
Sbjct: 199 RLEKNPLRILDSKNPAIQEIVAGAPRLYDYLSVASVEDFEKVLYYLQERGITYEIDHRLV 258

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVI 329
                             G + ++     + G     G    V    +  G  RV+  + 
Sbjct: 259 RGLDYYCHTAFEVTSSELGAQDAIGGGGRYDGLARELGSSSEVPASGFAAGMERVLLTME 318

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
           +             V                  D   ++  RL K G     D     + 
Sbjct: 319 KQGLFAALTPQGPVVYVVLQQ--------AELADHGMQVAWRLRKAGIRTEIDLAARSMK 370

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +Q   A+ +     + +GS  V+      K+ +T  +  +SLE V+     
Sbjct: 371 AQMRDANRMRASWALFIGSAEVTTGLYAFKNLVTSEQTTLSLEAVLETLHE 421


>gi|16081268|ref|NP_393577.1| histidyl-tRNA synthetase [Thermoplasma acidophilum DSM 1728]
 gi|13878789|sp|Q9HLX5|SYH_THEAC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|10639245|emb|CAC11247.1| probable histidyl-tRNA synthetase [Thermoplasma acidophilum]
          Length = 426

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 61/432 (14%), Positives = 127/432 (29%), Gaps = 46/432 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   + P        +     E     G   +  P+L+  DL+  +SG  +   ++    
Sbjct: 11  GFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSG--EELLQQTYSF 68

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P        +  S     R L +  +    ++ +    R+     RE  
Sbjct: 69  VDKGGREVTLIPEATPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQAGRY-----REHY 123

Query: 157 MKDAYSFDLTPEGSK-----------------HSYNKMFVSYLRIFHRLGLKSIPMRAES 199
             +A  F      +                    Y     S   +   +G  +       
Sbjct: 124 QFNADIFGSDSPEADAEVIALASSILDRLGLQDIYEIRINSRKIMEEIIGGMTSSDPFSV 183

Query: 200 GPIGGDLS----HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
             I          EF+    +            D  + S     D++  +     +  A 
Sbjct: 184 FSIIDRYHKISREEFVDQLRSAGIGEDGVSMIAD--LCSGTRGIDEMARITGKSSEEIAR 241

Query: 256 YAATSD------VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
            AA  D      V N +   S+         GI        G   ++     +       
Sbjct: 242 MAAVEDLLASYGVKNVRYDFSIVRG-LSYYTGIVFEAYDRSGQFRAILGGGRYDNLASLM 300

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
               + + G G    V +++    + +      SV   ++     K +  +  +   K+ 
Sbjct: 301 SGESVPAVGFGMGDAVISLLLKRENVQIPREKKSVYICRVG----KINSSIMNEYSRKLR 356

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
                +   V   + G     ++A A  +G    VI G + +    V I++  TG +E++
Sbjct: 357 E--RGMNVTVEIMERGLSAQLKYASA--IGADFAVIFGERDLERGVVTIRNMYTGSQENV 412

Query: 430 SLEEVINYASHR 441
            L+ V+ +   +
Sbjct: 413 GLDSVVEHLISQ 424


>gi|325967867|ref|YP_004244059.1| glycyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
 gi|323707070|gb|ADY00557.1| glycyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
          Length = 591

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 107/364 (29%), Gaps = 19/364 (5%)

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           ++RL +     + +    E              R +P       +K   E RPR  V   
Sbjct: 212 LIRLREFTQMEIEFFFDPENAKCPYLDELDVKLRIIPEKDVVTGVKEPREFRPREAVEGG 271

Query: 153 ------REFLMKDAYSFDLTPEGS-KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
                   F M  A  +      S  H Y    +   R  +        + +E       
Sbjct: 272 IVPNEWMAFFMGLATIYMNELGISLDHQYFLAKLPEERAHYSAASFDQMVYSERFGWVEV 331

Query: 206 LSHEFIVLADTGETQVFCSKDFM---DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
             H +    D G    +   D         P E  +     +   I E +          
Sbjct: 332 SGHAYRTDYDLGRHARYSGYDLSVDRRLTTPKEVVEVRVYPNPQRIREVFGNEMPKVMQA 391

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
             +     L        R I  G+       +                         G  
Sbjct: 392 IGKADPRWLANELANKGRVIIDGYTITSDVVFIREERRKVHVER---FIPHDVEPSFGVD 448

Query: 323 RVVAAVIESSHDGKGIIW----PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           R+V   +E ++           P  +AP K++++ I    +        I+  LS VG  
Sbjct: 449 RIVYVTLEHAYTEVNGKPLLRLPPDIAPIKVAVLPIIKKQEYVS-IGRNIFRELSMVGVK 507

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             +DD    IGS++A  D +G P  + +  K   DS V I+ R T  +  +S+ ++I   
Sbjct: 508 AVYDD-DGAIGSRYAKYDSVGVPFAITIDDKTPIDSTVTIRDRDTKAQIRVSMNDIIKVI 566

Query: 439 SHRF 442
           +   
Sbjct: 567 TDAI 570



 Score = 51.3 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 14/89 (15%)

Query: 24 KLMLRTGMIHQ---------HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI----EMS 70
          +LM   G  +             G Y + PLG +   N+    R+            E+ 
Sbjct: 8  ELMSEGGFFYPSFEIYRSKAEVGGFYDYGPLGVELKRNIIEKWRKIFV-YPYQDFIVEIE 66

Query: 71 VPTLQSADLWVESGRYDSYGKEMLRLADR 99
           P +    ++  SG  + +   ++     
Sbjct: 67 TPIVMPKIVFEASGHVEHFTDAIVECTKC 95


>gi|330840299|ref|XP_003292155.1| hypothetical protein DICPUDRAFT_7467 [Dictyostelium purpureum]
 gi|325077610|gb|EGC31311.1| hypothetical protein DICPUDRAFT_7467 [Dictyostelium purpureum]
          Length = 407

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/407 (15%), Positives = 121/407 (29%), Gaps = 22/407 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G Y + P  ++    VN I +      G  E+S P ++  +L+  S G Y D   KEM  
Sbjct: 6   GTYDYFPNEKRVYSFVNQIGKSVSELYGYEEISTPIIEPFELFNRSVGEYSDIVMKEMFT 65

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP-FTFYQIQLKFRDELRPRFGVMRSRE 154
             D + +A+   P     +     +   +    P   +Y     FR E   +    +  +
Sbjct: 66  FKDLSGQAICLRPEGTAGVIRAIINEGSTTSTSPTQKYYYSGPMFRYERPQKGRQRQFEQ 125

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHEFIV 212
           F  +         +         F+  L I        I    +   I    D   EF  
Sbjct: 126 FGAELIGDSHPRSDVEIIDMAYHFIEKLGIPSDQFHLKINSLGDKNSIKTYSDALTEFYQ 185

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                 +     +      +   ++     I +N          + +     + + + L 
Sbjct: 186 GKIDKLSPDSIKRLQRGNALRILDSKDKGDIEINKDAPLLQNYLSDSCKQRFKSVLEGL- 244

Query: 273 ENKRVSARGIEVGHIFYFG-TKYSLPMSATFKGA----DGKDHYVQMGSYGIGAMRVVAA 327
            +       I+ G +      ++++      K       G  +     + G     ++  
Sbjct: 245 -DNLGIKYQIDNGLVRGLDYYRHTIFEIIILKDNLAILGGGRYDGLANNIGYKHNEILP- 302

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDACEKIYARLSKVGCDV-----F 380
            I  +     I+   +          I     +Q+  D+   + +RL K G         
Sbjct: 303 SIGWASGIDRILIYINQDIIPKKSNPIGIVIGNQIFSDSAMSLCSRLRKNGFYTVLPTFK 362

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            D+  E +  Q            VI G   +  + V IK+     +E
Sbjct: 363 LDE--ENMTKQLKKISKFNPNFVVIFGEDEMKSNSVCIKNMNERTQE 407


>gi|225456501|ref|XP_002280957.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 710

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 79/281 (28%), Gaps = 28/281 (9%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                     +         +     +         +    +   +      +F    + 
Sbjct: 411 LANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHTDKSGVPLVAHEKFAEPREV 470

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            +  +   K  +            +  +L ++ E+      AT +   E  F      K 
Sbjct: 471 EKLIIAPVKKELGLAFKGNQKMVVE--ALEAMSEKEAMEMKATLESTGEVGFHVCTLGKD 528

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V+             TK  L +S   K    +     +     G  R++  + E S   +
Sbjct: 529 VTI------------TKKMLSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTR 576

Query: 337 GIIWPDSV---APFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                D       F   +  IK        +Q   +  + I   L+  G     D  G  
Sbjct: 577 PSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKSIAKSLTAAGISYKIDITGTS 636

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           IG ++A  D LG PL + V     S S V I+ R +  +  
Sbjct: 637 IGKRYARTDELGVPLAITVD----STSSVTIRERDSKDQIR 673



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYD 87
           +  I++   G+Y + P G     NV A  R+        +E+  P +    +   SG  D
Sbjct: 114 SFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVDCPCVTPEIVLKASGHVD 173

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +   M++  ++           ++  
Sbjct: 174 KFTDLMVKD-EKTGTCYRADHLLKDFC 199


>gi|297734516|emb|CBI15763.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 79/281 (28%), Gaps = 28/281 (9%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                     +         +     +         +    +   +      +F    + 
Sbjct: 388 LANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHTDKSGVPLVAHEKFAEPREV 447

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            +  +   K  +            +  +L ++ E+      AT +   E  F      K 
Sbjct: 448 EKLIIAPVKKELGLAFKGNQKMVVE--ALEAMSEKEAMEMKATLESTGEVGFHVCTLGKD 505

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V+             TK  L +S   K    +     +     G  R++  + E S   +
Sbjct: 506 VTI------------TKKMLSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTR 553

Query: 337 GIIWPDSV---APFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                D       F   +  IK        +Q   +  + I   L+  G     D  G  
Sbjct: 554 PSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKSIAKSLTAAGISYKIDITGTS 613

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           IG ++A  D LG PL + V     S S V I+ R +  +  
Sbjct: 614 IGKRYARTDELGVPLAITVD----STSSVTIRERDSKDQIR 650



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYD 87
           +  I++   G+Y + P G     NV A  R+        +E+  P +    +   SG  D
Sbjct: 91  SFKIYRGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVDCPCVTPEIVLKASGHVD 150

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +   M++  ++           ++  
Sbjct: 151 KFTDLMVKD-EKTGTCYRADHLLKDFC 176


>gi|254479915|ref|ZP_05093163.1| histidyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
 gi|214039477|gb|EEB80136.1| histidyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
          Length = 428

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 122/443 (27%), Gaps = 61/443 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP    +   V  +I       G  E+ +P ++  DL+        D   KEM  
Sbjct: 9   GMNDILPDVTPSWQYVETVIGSLMASYGYSEVRMPIVEQTDLFRRGVGETTDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY--QIQLKFRDELRPRFGVMRSR 153
             DRN++++   P            H          +     + +   + R R       
Sbjct: 69  FLDRNEESLTLRPEGTAGCVRAAIQHGLLNTVQRLWYTGAMFRYERPQKGRQRQFHQVGA 128

Query: 154 EFLMKDAYSFDLT--------------------------PEGSKHSYNKMFVSYLRIFHR 187
           E     +   D                               S+++Y    V+YLR    
Sbjct: 129 EAFGVASPDMDAEVILLTARLWRELGIAEDVQLQLNSIGNAQSRNAYRDALVAYLRERVD 188

Query: 188 LGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              +    R +S P  I    + E   + D   + V    +             D     
Sbjct: 189 ALDEDSQRRLDSNPLRILDSKNQETQAVLDGAPSLVDFLDEESAADFSRLRELLDAAGVA 248

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
            S+  +        +    E + D L     V   G   G +   G K            
Sbjct: 249 YSLNPRLVRGLDYYNKTVFEWVTDRLGAQGTVCGGGRYDGLVEQLGGK------------ 296

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                 V    + +G  R     +    +  G + P   +     +    +       A 
Sbjct: 297 -----SVPGVGFAMGIER-----LVLLLEECGQLPPAEASADVYVVSFGDSAQTEALAAA 346

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           E++   L   G  +   + G    SQ   AD  G  L +I G   V+ + V IK      
Sbjct: 347 EQLRDALP--GLRIVQHNGGGSFKSQMKKADKSGARLALIWGDDEVAANTVSIKPLREQN 404

Query: 426 -----REDMSLEEVINYASHRFS 443
                ++ ++  E+        +
Sbjct: 405 NERVGQQSVARAELEQTLRALLA 427


>gi|78484967|ref|YP_390892.1| histidyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
 gi|123728060|sp|Q31I05|SYH_THICR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|78363253|gb|ABB41218.1| histidyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
          Length = 426

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/403 (12%), Positives = 128/403 (31%), Gaps = 26/403 (6%)

Query: 61  QNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
             + G   + +P ++  +L+  S G   D   KEM    DRN  ++   P          
Sbjct: 33  LKQYGFQSIRLPIVEKTELFARSIGEVTDIVEKEMYTFEDRNGDSLTLRPEGTAGCVRAV 92

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH------ 172
             +  ++  +   +Y     FR E   +    +  +F ++      +  +          
Sbjct: 93  IQNGLAHNQIQKLYYT-GPMFRHERPQKGRYRQFNQFGVEVFGIESVDIDAELIALSARL 151

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
                  +     + LG ++         +     H+  +  D+           +D   
Sbjct: 152 WERLGLQNLELQINSLGSQAARQAYRDILVAYFEEHKSQLDEDSLRRLSTNPLRILDTKN 211

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS------LPENKRVSARGIEVGH 286
           P      +    L   +++ +  +      H + L  +      L        R +    
Sbjct: 212 PDMKALVEAAPKLMDHLDEASKQHYEELKAHLDDLGVAYVENPNLVRGLDYYNRTVFEWV 271

Query: 287 IFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
               G + ++     + G              + +G  R++A ++++       +  +  
Sbjct: 272 TTELGAQGTVCAGGRYDGLVEQIGGKPTPAVGFAMGIERLMALLMDN------ELVHEEN 325

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
            P    ++   +  +      E+I   L      V  +  G    SQF  AD  G  + +
Sbjct: 326 GPDVYMVLAGDSTKRPGLVISEQIRENLPD--IKVQMNCGGGSFKSQFKKADKSGARIAL 383

Query: 405 IVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHRFSNNR 446
           ++G   V+  ++ +K+ R    +E +  ++++       + ++
Sbjct: 384 VLGEDEVNQKQIAVKYLREEREQEMVPWDQMVTLLKTALTESK 426


>gi|225869430|ref|YP_002745378.1| histidyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
 gi|259511958|sp|C0MGD4|SYH_STRS7 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|225702706|emb|CAX00828.1| histidyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
          Length = 426

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 61/406 (15%), Positives = 118/406 (29%), Gaps = 19/406 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP+       V  + RE   +    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 13  LPVAAAKWQYVEDVARETFKQYHYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        RSREF   
Sbjct: 73  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQVG---RSREFHQI 129

Query: 159 DAYSF-DLTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPIGGDLSHEFIVLA- 214
               F    P     +    +  + R+  +      +    A S         +++    
Sbjct: 130 GVECFGSANPATDVETIAMAYHLFERLGIKGVTLHLNSLGNAASRAAYRQALIDYLSPMR 189

Query: 215 -----DTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
                D+           +D     +     +  S+ + + E   A + A   +      
Sbjct: 190 ETLSKDSQRRLDENPLRVLDSKEKEDKIAVANAPSILDYLDEDSQAHFDAVRSMLEALAI 249

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             + +   V         IF F T+ +         A G+   +     G         +
Sbjct: 250 PYVIDTNMVRGLDYYNHTIFEFITEVNQSELT--ICAGGRYDGLVEYFGGPATPGFGFGL 307

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +   +   + I         A   +   + + G  V  D +G +I
Sbjct: 308 GLERLLLILDKQGVELPVEEGLDVYIAVLGADANVAALALTQAIRRQGFTVERDYLGRKI 367

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +QF  AD     + + +G   +   +  +KH  T     +S +++
Sbjct: 368 KAQFKSADTFKAKVVITLGESEIKAGQAVLKHNQTRQEMTVSFDQI 413


>gi|288941007|ref|YP_003443247.1| histidyl-tRNA synthetase [Allochromatium vinosum DSM 180]
 gi|288896379|gb|ADC62215.1| histidyl-tRNA synthetase [Allochromatium vinosum DSM 180]
          Length = 420

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 66/439 (15%), Positives = 116/439 (26%), Gaps = 62/439 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G++  LP        +    RE     G  E+  P ++  +L+  S G   D   KEM  
Sbjct: 10  GMHDILPERIAIWHRIEEAAREVLAGYGYSEIRTPLVEVTELFKRSIGEVTDIVEKEMYS 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR+  ++   P            H       P   +     FR E   R    +  + 
Sbjct: 70  FADRHGDSLSLRPEGTASCVRAAIEHGL--LVQPQRLWYQGPMFRYERPQRGRYRQFHQI 127

Query: 156 LM-----------------------------KDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            +                                    L     +  Y +  V YL+   
Sbjct: 128 GVEAFGLAGPDIDVEVILLTARLWRRLGLDSFRLEINTLGDSAERQVYRERLVDYLQARA 187

Query: 187 RLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                    R  + P  I      E   L     + +    +             D    
Sbjct: 188 DQLDADSQRRLSTNPLRILDSKHPETQRLLVDAPSLMDVLGEETRAHFERLRAGLDAAGI 247

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I  +        +    E + + L     V A G   G +   G + +    A    
Sbjct: 248 DYQINPRLVRGLDYYNRTVFEWITEDLGAQGTVCAGGRYDGLVEQLGGRAT---PAVGFA 304

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
              +     +   G    R + A + +  +      P      + +L  +          
Sbjct: 305 MGLERLVEILEQSGFAPERRLDAYLVAVGERAEAAAPALAERLRDALPRL---------- 354

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLT 423
                 RL   G        G    SQF  AD  G    +I+G + +    + +K  R  
Sbjct: 355 ------RLQSNG-------GGGSFKSQFKKADKSGARFALILGDEELERGVIGVKDLRGE 401

Query: 424 GIREDMSLEEVINYASHRF 442
             + ++  E+V  + +   
Sbjct: 402 SGQRELRHEDVAAFLTEML 420


>gi|323449823|gb|EGB05708.1| hypothetical protein AURANDRAFT_54505 [Aureococcus anophagefferens]
          Length = 147

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%)

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                  +I   L+  G     D  G+ +G ++A AD LG P  V V    + D  V ++
Sbjct: 22  KFMPFVAQIEKLLTDAGITNKADTSGQSVGKRYARADELGTPFGVTVDFDTLIDHSVTLR 81

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R T  +  + +  + +     
Sbjct: 82  ERDTMRQVRVKISALPSLLQEL 103


>gi|149926359|ref|ZP_01914620.1| histidyl-tRNA synthetase [Limnobacter sp. MED105]
 gi|149824722|gb|EDM83936.1| histidyl-tRNA synthetase [Limnobacter sp. MED105]
          Length = 441

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/412 (15%), Positives = 112/412 (27%), Gaps = 31/412 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADR-NDKAMIY 106
            +N+  ++RE     G   +  P L+   L+    G   D   KEM    DR N   +  
Sbjct: 35  WENLEVMLREWLTSYGYRLIKTPVLEPTSLFRRGIGEVTDIVEKEMFSFVDRLNGDELTL 94

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +      H  +Y   P   Y +   FR E   R    R R+F   D  +    
Sbjct: 95  RPEFTAGIARATIQHNLTYAA-PQRVYSMGPVFRHERPQRG---RYRQFHQLDVEALGFA 150

Query: 167 PEGSKH---------SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                                       + LG     +      I    ++  ++  D  
Sbjct: 151 GPDIDAELIVMLSRLWREMGLEDVRLEINCLGEAPERLAHRQALITYFEANAELLDEDAK 210

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                     +D   P+     +    L   + EQ  A Y     + ++     +   + 
Sbjct: 211 RRLHSNPLRILDTKNPTMQDMVNGAPRLSEFLGEQSLAHYQGVKRLLDDAGVRYIENPRL 270

Query: 277 VSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           V         +F       GT+ ++     + G           + G          I  
Sbjct: 271 VRGLDYYNLTVFEWITDALGTQGTICGGGRYDGLIEVLGGKPTPAIGF--------AIGL 322

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
               +  +  +         + +    +        +   L   G  V     G    SQ
Sbjct: 323 ERLLELYLEVNQPDDTADLDVYVVHQGEGTARRAFTLAEELRDAGFAVVLHAGGGGFKSQ 382

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHRF 442
              AD+ G  + VI+G   ++     +K  R    +E+   E +        
Sbjct: 383 MKRADVSGAAVAVILGENELNAGTAAVKLLRGESKQEEFKQEGLAEAIFGLL 434


>gi|332654808|ref|ZP_08420550.1| histidine--tRNA ligase [Ruminococcaceae bacterium D16]
 gi|332516151|gb|EGJ45759.1| histidine--tRNA ligase [Ruminococcaceae bacterium D16]
          Length = 455

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 68/460 (14%), Positives = 136/460 (29%), Gaps = 65/460 (14%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP  Q   D +  I+RE  +  G   +  P ++++++ +  G  ++  +    +
Sbjct: 10  SGFMELLPARQAQFDRMVEILRETYSLYGFTPLDTPLIEASEVLLAKGGGETEKQIYRFM 69

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
               D ++ +  T              S    PF  +QI   +R E   R    R REF 
Sbjct: 70  KGDTDLSLRFDLTVPLAKYVALNY---SKLTFPFRRFQIGKVYRGERAQRG---RFREFY 123

Query: 157 MKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG---------DL 206
             D     D   + S  +         + F RLGLK   +R  +  I           + 
Sbjct: 124 QADIDVIGDGKLDISNEAEIPAI--IYQAFTRLGLKRFQIRVNNRKILNGFYAMLGLTEK 181

Query: 207 SHEFIVLADT-------------------------GETQVFCSKDFMDFPI-------PS 234
           S E +   D                          GE   F +    +  +         
Sbjct: 182 SGEIMRTVDKLDKIGAEKVKELLMEEEIGLTDEQAGEILTFIAITGSNEAVLSALEGYRG 241

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
            N  FD  +   + V ++ A +          L  +           +    +       
Sbjct: 242 RNEIFDQGLDELNTVVKYLAAFGVPQTHFAVDLTIA--RGLDYYTGTVYETTMLDHPEIG 299

Query: 295 SLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI 352
           S+     +        D  +      IG  R+   + +  +    +    +         
Sbjct: 300 SICSGGRYDNLAEYYTDKQLPGVGISIGLTRLFFVLEDQGYLNDALNTAPADVLILPMTD 359

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
           ++             +   L + G         ++   + + AD L  P  V +G   +S
Sbjct: 360 DLSP--------AIALATTLRQAGIRTQIHAEQKKFKQKISYADKLSIPYAVFLGEDEIS 411

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYAS---HRFSNNRPVL 449
                +K   +G +  +S  E +++      + +  +P+L
Sbjct: 412 SGVCAVKDLQSGEQVKLSPAEAVSHIQAGLDKLNQGKPIL 451


>gi|301301210|ref|ZP_07207366.1| histidine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851209|gb|EFK78937.1| histidine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 431

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 65/407 (15%), Positives = 114/407 (28%), Gaps = 18/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DSYGKEMLRLADRNDKAMIYG 107
              V    RE   +    EM  P  +S +++   SG   D   KEM    D+ D+ +   
Sbjct: 20  WQYVEEKARELFKKYRYEEMRTPIFESFEVFSRTSGETSDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  +         PF  Y +   FR E        R REF      +F +
Sbjct: 80  PEGTAGVVRSFVENKLYGPEVQKPFKTYYMGPMFRYERPQSG---RLREFHQIGVEAFGV 136

Query: 166 TPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                      M           S     + LG            I      E  +  D+
Sbjct: 137 DNPTLDVEVMAMAVDLLKSFGLNSLRVAVNTLGDLETRNNYRQALIDYLEPFEAELSDDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            E         +D     +     +  S+ + + E     +     + N+   + + ++ 
Sbjct: 197 KERLHKNPLRVLDSKDEKDKEIVANAPSILDYLTEDAQKHFETVKSLLNDLGIEYVIDSN 256

Query: 276 RVSARGIEVGHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            V         IF       +     T   A G    +     G     V   +      
Sbjct: 257 MVRGLDYYNHTIFEIMSDSKAFNGKWTTVCAGGHYSGLVEQLGGPQTPGVGFGLGVERLL 316

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                  D++       + +     V   A  K+   L   G     D +  +   QF  
Sbjct: 317 LILDAEEDALPIENPLDVYVVGIGDVTNAATLKLVQNLRHQGFTADRDYLNRKPKGQFKS 376

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           A+ L     + +G   + + +  +K    G    + L +V N  +  
Sbjct: 377 ANRLNARFTLTIGETELQEQEANLKFMENGNEISVKLADVENDFASL 423


>gi|238504368|ref|XP_002383415.1| prolyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
 gi|220690886|gb|EED47235.1| prolyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
          Length = 514

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 81/210 (38%), Gaps = 18/210 (8%)

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG-----ADG 307
            A Y   +D+    +   +P   +     IE      FG   S     T +         
Sbjct: 188 NAAYLQDTDISTGVVIAYIPATNQC----IEGAKCHEFGQTLSKAYEITVRDPSATAEPA 243

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV----CRD 363
              +V    + I ++R +  ++ +  D  G++ P  +A  +++++  +A           
Sbjct: 244 ALLHVWQNCWRI-SIRALGVMVATHSDNHGLVLPPRIAETQVAIVAAQASSTDEQLILDT 302

Query: 364 ACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             +++ +RLS  G  V  DD  G  +G +F    + G PL +++G   V++  V I  R 
Sbjct: 303 ETDRLVSRLSSAGIRVKVDDLEGYSLGWRFNEWIVSGTPLFIVLGPNEVTNQVVTIGRRD 362

Query: 423 ---TGIREDMSLEEVINYASHRFSNNRPVL 449
                 + + ++ E+        +N +  L
Sbjct: 363 LLHAEGKVEAAIPELHTIIPTTLANIQEEL 392


>gi|139474588|ref|YP_001129304.1| histidyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|166228619|sp|A2RGY1|SYH_STRPG RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|134272835|emb|CAM31113.1| histidyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
          Length = 426

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/422 (14%), Positives = 120/422 (28%), Gaps = 32/422 (7%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++ R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 13  LPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 73  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 129

Query: 159 DAYSFDL-TPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG            I       
Sbjct: 130 GVECFGAANPATDVETIAMAYHLFEKLGIKDVTLHLNSLGSPESRAAYRQALIDYLTPMR 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    +   S+ + + E+  A + A  D+      
Sbjct: 190 DQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVKDMLEALDI 249

Query: 269 DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +   V         IF F     G+  ++     +    G     +   +G G   
Sbjct: 250 PYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               +I         I  +      +      +          ++   + + G     D 
Sbjct: 310 ERLLMIIEKQGITLPIETEMDVYLAVLGDGANSK-------ALELVQAIRRQGFTAERDY 362

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI---NYASH 440
           +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+++      S 
Sbjct: 363 LGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQELEVSFEDMMTNFENISE 422

Query: 441 RF 442
           + 
Sbjct: 423 QL 424


>gi|332970233|gb|EGK09226.1| histidine--tRNA ligase [Psychrobacter sp. 1501(2011)]
          Length = 436

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/409 (11%), Positives = 115/409 (28%), Gaps = 31/409 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKA--MI 105
              +  +++E  ++ G  E+ +P ++   L+  +     D   KEM    D++D    + 
Sbjct: 25  WRRLENMLKEVLDQFGYEEIRLPIVEETQLFARAIGDATDIVEKEMFSFTDKSDPPTPLT 84

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P            H     + P  +Y   +   ++ +        +  +         
Sbjct: 85  LRPEGTAGAVRAVIEHNLLRGDSPKFWYMGPMFRYEQPQKGRYRQFHQLGVEAFGSELVD 144

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
                    + M+             +     +          EF+             +
Sbjct: 145 VEAELIAMTHMMWKRLGIDHELTLEINSLGELDERLAYRAALVEFLHNK-KDLLDEDSQR 203

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------------- 272
                P+   ++   +  ++              S  H  +L   L              
Sbjct: 204 RLTTNPLRILDSKDKNTQTILENAPLLADFLGEESKAHFSQLKTYLKALGIEYVVNPNLV 263

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + +        G++ ++     + G  G+   +        A++   AV  + 
Sbjct: 264 RGLDYYNKTVFEWVTDKLGSQATVCAGGRYDGLIGQLKSIGKSVDKAKAVKSDPAVGFAM 323

Query: 333 HDGKGIIWPDS---VAPFKISLINIKAHDQVCRDACEKI--YARLSKV--GCDVFWDDMG 385
              + ++   +   +       I +  H ++     + +     L        +      
Sbjct: 324 GLERLLLLVQAINPMPETTSCDIFVVVHPEL---YAQGLLYAQSLRGARSDLRIKM-SSA 379

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             + +Q   AD  G  L VI+G   + +  + IK   TG +  +S +++
Sbjct: 380 NSLKAQMKKADKSGAKLTVILGQDEIENGTISIKTMETGEQ--VSQDKL 426


>gi|120403575|ref|YP_953404.1| histidyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
 gi|166228587|sp|A1T898|SYH_MYCVP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|119956393|gb|ABM13398.1| histidyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
          Length = 422

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 114/409 (27%), Gaps = 31/409 (7%)

Query: 38  GIYSWLPLG----QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           G+  +LP          + + A  R    R G  ++ +P  +   L+        D   K
Sbjct: 12  GVPDYLPPASAEFVAVRNGLLAAAR----RAGYGDIELPIFEDTALFARGVGESTDVVSK 67

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   ADR D+++   P     +      H      LP         FR E RP+ G  R
Sbjct: 68  EMYTFADRGDRSVTLRPEGTAGVMRAVIEHGLDRGQLPVKLCYSGPFFRYE-RPQAGRYR 126

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHE 209
             +  +         P             +  +        I    +    P   +L  E
Sbjct: 127 QLQ-QVGVEAIGVDDPALDAEVIAVADAGFRSLGLDGFRLDITSLGDDSCRPQYRELLQE 185

Query: 210 FIVLADTGETQVFCSK----DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
           F+   D  E     ++      +D   P       D   +   +      +  T   H +
Sbjct: 186 FLFKLDLDEETRRRAEINPLRVLDDKRPHMKEMTADAPVMLDHLSDAAKQHFDTVLAHLD 245

Query: 266 KL-FDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
            L    +   + V          F       G +  +     + G   +     +   G 
Sbjct: 246 ALSVPYVINPRMVRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMHQLGGRDLSGIGF 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G       +   +            A   +  + +    +V       + A+L   G  V
Sbjct: 306 GLGVDRTLLALRAEGKTAG----ETARVDVYAVPLGGDAKVRLAV---LAAQLRAAGVRV 358

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
                   +      AD  G  + ++ G + +    V +K   TG + D
Sbjct: 359 DVAYGDRSLKGAMKGADRSGASIALVAGDRDLEAGTVGMKSMATGEQVD 407


>gi|269986881|gb|EEZ93158.1| Glycine--tRNA ligase [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 488

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/451 (12%), Positives = 122/451 (27%), Gaps = 62/451 (13%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G + + P+G + L+N+    R+       +E+S   +    +   SG  +++  +M   
Sbjct: 33  SGFWDYGPIGVRILNNLLEQWRQTVYSMNGLEISGSVVLPKIVLQASGHEENFF-DMEIK 91

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
                         EE  +      +   +   +         +              F 
Sbjct: 92  CKNCGAVYRVDKLLEEKDSSKNFEGLTDEQYFDYIKQYNIKCSKCGGELGEIKKFGTMFS 151

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL---------- 206
           +K     D+       +   +F+ + RIF   G K   + A+ G    +           
Sbjct: 152 LKVGE--DVQAYLRPEACQSIFLDFKRIFEVYGKKFPMVIAQVGKAFRNEISPRNTLLRQ 209

Query: 207 ------SHEFIVLADTGETQVFCSKDFMDFPIPS-------------------------- 234
                   E     D             D    S                          
Sbjct: 210 REFYQNDIEIFFTEDNFNLDNDYEIKIYDKEDKSIDKISIKDALSKGIIKSNVTAYGISK 269

Query: 235 -----ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                    F D       + +  A Y+  S     K  DS  E    + RG        
Sbjct: 270 IQEFLLRVGFKDEEIRYRKLYEDKAFYSKESFDIEIKKQDSWVELVACNNRG-------E 322

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV--APF 347
                     A     +G    +   S G   +  +        D +   +  +   +P+
Sbjct: 323 HDLLSYEKYGAKGLRIEGNIPQIFEISMGTDRLFYLLLFSSFRKDDQRSWFSMNSAVSPY 382

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           K ++  + + D +   A     + + K      + + G  IG ++  A+ +G  +   V 
Sbjct: 383 KAAIFPLVSKDNLDVKAKAMFESSMHKNNI--LYSETG-SIGKRYRRAEEVGIKIAFTVD 439

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              V D  + ++   +  +  +S   +  + 
Sbjct: 440 YDTVEDGTITVRESDSMKQFRISSNNLDRFI 470


>gi|90408606|ref|ZP_01216761.1| histidyl-tRNA synthetase [Psychromonas sp. CNPT3]
 gi|90310298|gb|EAS38428.1| histidyl-tRNA synthetase [Psychromonas sp. CNPT3]
          Length = 423

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/426 (12%), Positives = 116/426 (27%), Gaps = 41/426 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRYDSYGKEMLRL 96
           G+   LP        + +++R+  +  G  E+ +P ++S  L+  S G      ++ +  
Sbjct: 10  GMNDTLPDQTPVWQKLESLLRQVVSSYGYSEIRMPLVESTALFKRSIGEVTDIVEKEMYT 69

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D N  ++   P            H   Y      +Y     FR E   +    +  +F 
Sbjct: 70  FDDNGDSLTLRPEGTASCVRAGNEHGLLYNQERRLWYT-GPMFRHERPQKGRYRQFHQFG 128

Query: 157 MKDAYSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           ++         +      +                 + LG        +   +     HE
Sbjct: 129 VETFGMASADIDAEVILLSARLWKALGINEHVELQINSLGSNVARAAYKEVLVAFLEKHE 188

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH-NEKLF 268
             +  D+           +D   P       D   L+  ++  +  +      + +    
Sbjct: 189 DQLDEDSKRRMKTNPMRVLDSKNPQVQALLVDAPKLSEHLDDESVEHFKQLQKYLDAAGI 248

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGA 321
             +   + V         +F       G + ++     + G              + +G 
Sbjct: 249 KYVINERLVRGLDYYNRTVFEWVTSSLGAQGTICAGGRYDGLVEQLGGKSTPAVGFAMGL 308

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL--------S 373
            R     I    +   +    +      S++  +  D       E I   L         
Sbjct: 309 ER-----IVLMLNELELNKDIASDVDIYSVLVGENTDLAGFKMAEIIRTELPHLKMMHHC 363

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLE 432
             G              Q   AD  G  L +I+    +  + V IK       ++ + ++
Sbjct: 364 GAG----------NFKKQMKRADKSGARLALIIAEDELQGNSVTIKDLSGKIDQQTVDMD 413

Query: 433 EVINYA 438
            ++   
Sbjct: 414 SLLTVL 419


>gi|124003830|ref|ZP_01688678.1| histidyl-tRNA synthetase [Microscilla marina ATCC 23134]
 gi|123990885|gb|EAY30352.1| histidyl-tRNA synthetase [Microscilla marina ATCC 23134]
          Length = 467

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 64/459 (13%), Positives = 126/459 (27%), Gaps = 67/459 (14%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSAD-------------LWV 81
           LP G +          + +   I+    + G   +  P+++                ++ 
Sbjct: 8   LPKGTRDFGPEVMAKRNYILDTIKSTFQKFGFAPLETPSIEKLSVLTGKYGDEGDQLIFK 67

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS------HIKSYRNLPFTFYQI 135
                D  GK      D   K +      + +  D+           +     PF  YQI
Sbjct: 68  ILNSGDYLGKVTQDDIDEGAKHLTPKIADKALRYDLTVPFARFVVMHRDKLAFPFKRYQI 127

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI--FHRLGLKSI 193
           Q  +R +   +    R REF   DA          +     M    L         LK  
Sbjct: 128 QPVWRGDRPQKG---RYREFYQCDADVVGTDSLICEAEIIIMINEVLPKLGIDDFSLKIN 184

Query: 194 PMRAESGPIGGDLSHEFI--VLADTGETQVFCSKDFMDF---------PIPSENTDFDDI 242
             +  +G        E I  +     +         ++           I   +  FD  
Sbjct: 185 NRKVLTGIAQVIGHEERIGDICVAIDKLDKIGKDKVIEELATRGIDGAAIEKLHPFFDIK 244

Query: 243 ISLNSIVEQWTAPYAATSD--VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            S+   + +  A +A  +   +      + +    +   +  E    F      +L    
Sbjct: 245 GSITEKIAKLRAIFADKAPAGLQGLDEVEQVLNYIKTMTQSAEPEKDFSLDFDITLARGL 304

Query: 301 TFKGADGKDHYVQMGSYGI--GAMRV----------------VAAVIESSHDGKGIIWPD 342
           ++      +  V     G   G  R                  +  ++  +D    +   
Sbjct: 305 SYYTGAIFEVKVNNVQIGSISGGGRYDDLTGTFGLSGVSGVGFSFGVDRIYDVMDELNLF 364

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW--DDMGEQIGSQFAVADLLGF 400
                    +     D            R    G       D    ++  QF  A+    
Sbjct: 365 PANTHASVQVMFTNFDPKAEAYTLPFLPRFRNRGISCEIFPD--AAKLNKQFKYANRKSI 422

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           P  VIVG + +   K+ +K+  +G +E ++++E+I    
Sbjct: 423 PYVVIVGEEEMKSGKLTLKNMDSGEQEALTVDEIIEKLK 461


>gi|73747962|ref|YP_307201.1| histidyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|147668658|ref|YP_001213476.1| histidyl-tRNA synthetase [Dehalococcoides sp. BAV1]
 gi|83305868|sp|Q3ZWB6|SYH_DEHSC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189082292|sp|A5FSR7|SYH_DEHSB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|73659678|emb|CAI82285.1| histidyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|146269606|gb|ABQ16598.1| histidyl-tRNA synthetase [Dehalococcoides sp. BAV1]
          Length = 418

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/399 (13%), Positives = 116/399 (29%), Gaps = 13/399 (3%)

Query: 56  IIREEQNRT----GAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPT 109
            +R++  R     G      P  + A L+V S     D   KEM    DR    +   P 
Sbjct: 21  FVRQQAARIAALYGYQRTDTPVFEDAGLFVRSVGEGTDIVSKEMYTFEDRGGDKLTLRPE 80

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
               +   +  H    R  P   Y +   FR +        +  +F  +     D + + 
Sbjct: 81  GTAPVCRAYLEHGMQTRTKPVKLYYLSSIFRYDRPQAGRYRQHHQFGFEAIGEADASLDA 140

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                   F + L I       +     +  P       ++      G+    C+     
Sbjct: 141 EIIEMAWSFYNLLGITDLSLELNSIGCRQCRPNYISALKDYYQQH-AGKLCPDCNTRLDK 199

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSARGIE 283
             +   +    +  ++     +           H  +L + L              RG++
Sbjct: 200 NTLRLLDCKRAECQAVAGNAPRSADYLCPDCLAHYSRLKECLTILDLPFHENFRLVRGLD 259

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                 F  +     + +  G  G+   +     G     +  A                
Sbjct: 260 YYSRTVFEIQPMAEGAQSTIGGGGRYDGLIEQLGGEATPAMGFATGIERIILNLKRQGIV 319

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
            +P     + +    +    A   + + L K G  ++     + I +Q   A+ LG    
Sbjct: 320 PSPLPSPAVFLAYMGETASLASFALASDLRKAGIGIYQTYAQKSIKAQLRQANSLGVDWV 379

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           VI+G + +      +++     + ++ L+++I     + 
Sbjct: 380 VILGEEELKQGCAVLRNMKEAGQANIPLDQLICEIKKQI 418


>gi|89257070|ref|YP_514432.1| histidyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|167009457|ref|ZP_02274388.1| histidyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368308|ref|ZP_04984327.1| histidyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|123401535|sp|Q2A1H0|SYH_FRATH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|89144901|emb|CAJ80246.1| Histidyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|134254117|gb|EBA53211.1| histidyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
          Length = 421

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/416 (14%), Positives = 118/416 (28%), Gaps = 30/416 (7%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LPL       + + ++   +R    E  +P ++ ++L+  S     D   KE     DRN
Sbjct: 14  LPLDSYKWQFLESKVKLILDRYNYSETRLPIVERSELFHRSVGESSDIVSKETYDFQDRN 73

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P        +   +  + R      +     FR E   +    R R+F     
Sbjct: 74  GDSLTLRPEGTAGCVRMVIENNLATRGQTQKLWYCGPMFRYERPQKG---RYRQFYQLGV 130

Query: 161 YSFDLT-----------------PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
            ++                      G          S     +R       ++    P  
Sbjct: 131 EAYGFDGIAIDLEVIAIAWSLFKELGISEYVTLELNSLGSSLNRQEYTQALLQY-LKPYH 189

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            +L  + I   D    ++  SK      I +      D I  +  +          +   
Sbjct: 190 AELDEDSIKRLDKNPLRILDSKIEKTQKILANAPKLIDFIDHDLRLRFKQTCQYLDALGV 249

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             KL ++L          +        G++ ++     + G        +  + G     
Sbjct: 250 RYKLNENLVRGLDYYTGLVFEWTTDKLGSQSAICAGGRYDGLVDNLGGQKTAAIGFAIGM 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++                 F +    +           E I   L ++  D   D 
Sbjct: 310 ERLLLLLEDLGKLPNQDNACDVFFILDSAQL----HQSLAIVENIRQELPQLKID--MDL 363

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLEEVINYA 438
                 SQF  AD  G  + +I+G   + +    IK       ++ ++  E+IN+ 
Sbjct: 364 KFGSFKSQFKKADKSGAKVAIIIGQDELDNGFAGIKFLQQNEEQQQVAFNELINFL 419


>gi|30021425|ref|NP_833056.1| histidyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|39932342|sp|Q81B71|SYH1_BACCR RecName: Full=Histidyl-tRNA synthetase 1; AltName:
           Full=Histidine--tRNA ligase 1; Short=HisRS 1
 gi|29896979|gb|AAP10257.1| Histidyl-tRNA synthetase [Bacillus cereus ATCC 14579]
          Length = 426

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 70/427 (16%), Positives = 127/427 (29%), Gaps = 41/427 (9%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 12  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 71

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 72  GKRELALRYDLTIPFAKVVA--MNPNLRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 126

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++       F  +  +   + ++    +      ES  I  +L+ + I+ 
Sbjct: 127 VDIVGVESVMAEAELMAMAFELFRTLNLEITIQYNNRKLLNGILESINIPTELTSDVILS 186

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT    +  ++    E +  P  A      
Sbjct: 187 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADFKEAFNNPLVADGVNEL 246

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           ++L   L       A GI    IF       L M                 S G G  R 
Sbjct: 247 QQLQQYL------IALGINENTIFNPFLARGLTMYTGTVYEIFLKDRSITSSIGSGG-RY 299

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARL 372
              +     D              +    +   + +   A            C +I  +L
Sbjct: 300 DNIIGAFRGDNMNYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGTELQCLQIAQQL 359

Query: 373 SKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
                  V  +  G ++      A+    P  +I+G   +S + V +++   G    + +
Sbjct: 360 RSTTSLKVELELAGRKLKRALNYANKENIPYVLIIGEDELSTNTVVLRNMKEGSEVKVPI 419

Query: 432 EEVINYA 438
             +  Y 
Sbjct: 420 SSLSRYL 426


>gi|19746998|ref|NP_608134.1| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|32130117|sp|Q8NZ19|SYH_STRP8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|19749254|gb|AAL98633.1| putative histidine-tRNA ligase [Streptococcus pyogenes MGAS8232]
          Length = 426

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 61/417 (14%), Positives = 120/417 (28%), Gaps = 29/417 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++ R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 13  LPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 73  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 129

Query: 159 DAYSFDL-TPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG            I       
Sbjct: 130 GVECFGAANPATDVETIAMAYHLFEKLGIKDVTLHLNSLGSPESRAAYRQALIDYLTPMR 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    +   S+ + + E+  A + A  D+      
Sbjct: 190 DQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVKDMLEALNI 249

Query: 269 DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +   V         IF F     G+  ++     +    G     +   +G G   
Sbjct: 250 PYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++         I  +      +      +          ++   + + G     D 
Sbjct: 310 ERLLMVIEKQGITLPIETEMDVYLAVLGDGANSK-------ALELVQAIRRQGFTAERDY 362

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+++   ++
Sbjct: 363 LGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQEVEVSFEDMMTNFAN 419


>gi|323448245|gb|EGB04146.1| hypothetical protein AURANDRAFT_39148 [Aureococcus anophagefferens]
          Length = 729

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 317 YGIGAMRVVAAVIES-SHDGKGIIWPDSVAPFKISLINIKAH------DQVCRDACEKIY 369
              G  R++ A++E   H          V      +  IK        +        +I 
Sbjct: 554 PSFGIGRILHALLEHSFHQRDSKDEQRVVMRLAPPVAPIKCGIYNLQTNVKFMPFVTRIE 613

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
             L+  G     D  G+ +G ++A AD LG P  V V    + D  V ++ R T  +  +
Sbjct: 614 KLLTDAGITNKADTSGQSVGKRYARADELGTPFGVTVDFDTLIDHSVTLRERDTMAQVRV 673

Query: 430 SLEEVINYASHR 441
            +  + +     
Sbjct: 674 KISALPSLLEEL 685



 Score = 41.3 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 1/75 (1%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYD 87
              IH    G++   P G     NV  I R         +EM    L    +   SG  D
Sbjct: 113 AFEIHGGVTGLFDLGPPGCALKANVVDIWRRHFVLEEKMLEMECTCLTPEPVLKTSGHVD 172

Query: 88  SYGKEMLRLADRNDK 102
            +   M++  +  D 
Sbjct: 173 RFTDLMVKDIETGDC 187


>gi|258648890|ref|ZP_05736359.1| histidine--tRNA ligase [Prevotella tannerae ATCC 51259]
 gi|260850916|gb|EEX70785.1| histidine--tRNA ligase [Prevotella tannerae ATCC 51259]
          Length = 455

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 69/457 (15%), Positives = 130/457 (28%), Gaps = 60/457 (13%)

Query: 37  KGIY----SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYD 87
            GI      + P+     + +   IRE     G  ++  P L++          E  R  
Sbjct: 4   PGIPKGTRDFSPVEMARRNYIFNTIREVYALYGFRQIETPALENLSTLMGKYGEEGDRLL 63

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS---------------HIKSYRNLPFTF 132
                                    + T +                    +    LPF  
Sbjct: 64  FKVLNSGNFMAGLRAEDWNEEKLGHLATLLCEKGLRYDLTVPFARYVVQHREEIQLPFKR 123

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL---- 188
           YQIQ  +R +   +    R REF   DA         ++    ++     +         
Sbjct: 124 YQIQPVWRADRPQKG---RYREFYQCDADVVGSDSLLNEVELMQIIDEVFKRLQIRVCIK 180

Query: 189 --------GLKSIPMRAES-----------GPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                   G+  +   A+              IG D   + ++ A   E  V   +  ++
Sbjct: 181 INNRKVLSGIAEVLGAADKLVEITVAMDKLDKIGWDSVKDELMAAGLDEQAVEKLQPIIE 240

Query: 230 FPIPSENTDFDDIISLNSIVEQWTA--PYAATSDVHNEKLFDSLPENKRVSARGI--EVG 285
               +          L++           A   +   +    +  E  +  ARG+    G
Sbjct: 241 LKGENSEKLAVLRDWLSTSPTGLLGVDELAFVFERLEKAGLQNCCELDQSLARGLNYYTG 300

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            IF          S T  G    +     G  G+  + +             +    +  
Sbjct: 301 CIFEVKALDVEIGSIT-GGGRYDNLTGIFGLPGLSGVGISFGADRIYDVLNQLDLYPAAI 359

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW--DDMGEQIGSQFAVADLLGFPLQ 403
              + L+ I   +    D C ++  +    G       D    ++  Q + A+    P  
Sbjct: 360 EQSVRLLFINFGEAEA-DYCLQLARQTRAAGISTEVFPD--SVKMKKQMSYANARNVPYV 416

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            +VG+  + D  V +K  + G ++ +S+EEVI   S 
Sbjct: 417 ALVGADEMRDGTVSLKDMVNGEQKTLSIEEVIRLISE 453


>gi|77408139|ref|ZP_00784885.1| histidyl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77173239|gb|EAO76362.1| histidyl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 426

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 64/408 (15%), Positives = 112/408 (27%), Gaps = 19/408 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  +IR    +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVENVIRNLFKQYHYDEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P   Y I   FR E        R REF       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPTKMYYIGSMFRYERPQAG---RLREFHQVGVECFGS 136

Query: 165 LTPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             P     +              +     + LG            I         +  D+
Sbjct: 137 NNPTTDVETIAMGHHLFEDLGIKNVKLHLNSLGSPESRQAYRQALIDYLTPIREQLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D   P +    ++  S+ + + E   A + A   + +      + +  
Sbjct: 197 QRRLNENPLRVLDSKEPEDKLAVENAPSILDYLDESSQAHFDAVCHMLDALNIPYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+           A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEIEDNELT--ICAGGRYDGLVSYFGGPETPAFGFGLGLERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  S+       + I         A   +   +   G  V  D +G +I +QF  A
Sbjct: 315 ILDKQGISLPIENTIDLYIAVLGSEANLAALDLAQSIRHQGFKVERDYLGRKIKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D     + + +GS  V   +V +K+  T     +S E +    S    
Sbjct: 375 DTFNAKVIMTLGSSEVDSKEVGLKNNQTRQEVKVSFENIKTDFSSVLK 422


>gi|161761295|ref|YP_061151.2| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|73919756|sp|Q5X9E5|SYH_STRP6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
          Length = 426

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 61/417 (14%), Positives = 120/417 (28%), Gaps = 29/417 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++ R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 13  LPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 73  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 129

Query: 159 DAYSFDL-TPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG            I       
Sbjct: 130 GVECFGAANPATDVETIAMAYHLFEKLGIKDVTLHLNSLGSPESRAAYRQALIDYLTPMR 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    +   S+ + + E+  A + A  D+      
Sbjct: 190 DQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVKDMLEALDI 249

Query: 269 DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +   V         IF F     G+  ++     +    G     +   +G G   
Sbjct: 250 PYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++         I  +      +      +          ++   + + G     D 
Sbjct: 310 ERLLMVIEKQGITLPIETEMDVYLAVLGDGANSK-------ALELVQAIRRQGFTAERDY 362

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+++   ++
Sbjct: 363 LGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQEVEVSFEDMMTNFAN 419


>gi|323340840|ref|ZP_08081092.1| histidine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
 gi|323091963|gb|EFZ34583.1| histidine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
          Length = 435

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/407 (14%), Positives = 110/407 (27%), Gaps = 18/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DSYGKEMLRLADRNDKAMIYG 107
              +    R    +    EM  P  ++ +++   SG   D   KEM    D+ D+ +   
Sbjct: 30  WQFIEKKARALFKKFRYQEMRTPIFENFEVFSRTSGETSDIVTKEMYDFFDKGDRHVTLR 89

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P         +  +         PF  Y I   FR E        R REF      +F +
Sbjct: 90  PEGTAGFVRSYVENKLYGPEIQKPFKTYYIGPMFRYERPQAG---RFREFHQIGVEAFGV 146

Query: 166 T-PEGSKHSYNKMFVSYLRIF--------HRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             P                          + LG            I      E  +  D+
Sbjct: 147 DNPTLDVEVIAMAIELLKSFGLNSLKLALNTLGDNESRAAYRQALIDYLEPFEAELSDDS 206

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            E         +D     +    +   S+ + + +     +     + ++   +   ++ 
Sbjct: 207 KERLHKNPLRVLDSKDEGDQKIVEGAPSILDYLTDDAKKHFETVKSLLDDLGIEYEIDSN 266

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF   +   +          G  +   +   G      +   +      
Sbjct: 267 MVRGLDYYNHTIFEIMSDSKVFSGKWTTVCAGGRYNGLVEQLGGPETPGIGFALGVERLL 326

Query: 336 KGIIWPDSVAPFKISLINIKAH-DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
             +   +     +  L        +       KI   L   G     D +  +  +QF  
Sbjct: 327 LILEAEEDAFDIENDLDVYVVGIGESTNAETLKIAMSLRSQGFSADRDYLSRKPKAQFKT 386

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           A  L     + +G   +++ K  +K   TG    +SL +V    +  
Sbjct: 387 ASKLDAKYTLTIGETELAEGKANLKKMETGEEISVSLNDVYEDFAKL 433


>gi|33322995|gb|AAQ07234.1|AF496542_1 threonyl-tRNA synthetase 1 [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 107

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+  W+P G      +     +++   G   +  P L + D +  SG +D Y ++M    
Sbjct: 1   GLPYWMPKGATIRRIIERYXXDKEVAAGXXHVYTPVLMNLDAYKTSGHWDHYREDMFPPM 60

Query: 98  DRNDKAM-IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
           D  +  M    P +      I++ HI+SYR LP    ++ +  R 
Sbjct: 61  DMGEGEMLELRPMNCPSHIQIYKHHIRSYRELPIRIAELGMMHRY 105


>gi|224367377|ref|YP_002601540.1| HisS [Desulfobacterium autotrophicum HRM2]
 gi|259511944|sp|C0QFI0|SYH_DESAH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|223690093|gb|ACN13376.1| HisS [Desulfobacterium autotrophicum HRM2]
          Length = 425

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 67/423 (15%), Positives = 127/423 (30%), Gaps = 28/423 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G    LP        +     +     G  E+ +P ++  +L+  S G   D   KEM  
Sbjct: 7   GFRDILPGETPLWQTIERAASQLFEDFGFQEIRLPLIERTELFARSIGEVTDIVEKEMYT 66

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  + +   P     +   +  H     +     Y +   FR E   +    R R+F
Sbjct: 67  FPDRKGENITLRPEATASVVRSYIQHKMYAADPIQKLYTMGPMFRRERPQKG---RYRQF 123

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHE 209
              +A  F +           +       F RLGL  +     S       P+      E
Sbjct: 124 FQINAEVFGIASPYIDAQLILLLNEL---FKRLGLTDLTAHLNSLGCRECRPLFHRALTE 180

Query: 210 FIV------LADTGETQVFCSKDFMDFPIPSENTDFDDIIS-LNSIVEQWTAPYAATSDV 262
           F+V       +D            +D  +P       D  + L+ +    +  +      
Sbjct: 181 FLVSKQDRLCSDCRRRMDKNPLRTLDCKVPGCREAMQDAPTTLDHLCSDCSDHFTTVKAT 240

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              +  D L +   V          F   T      SA   G        ++G   + A+
Sbjct: 241 LKAQGVDFLVDKTLVRGLDYYSRTAFEIQTTALGAQSAVAGGGRYDALIKELGGPEVPAI 300

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                +   +     +    +     + +I +        +      +RL+ VG     D
Sbjct: 301 GFAIGLDRLAEVMAQLKGCPAPRGPDLFIIPLGPG---AMEKAYLCSSRLNLVGIRSETD 357

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM----SLEEVINYA 438
             G+ + S    AD L     +I+  +    +   +++  T  +  +      +EVI   
Sbjct: 358 YNGKSLKSLMKRADKLNAGHALILDYRQPDKNAPVLRNMKTREQVTLGLEDPTDEVIKIL 417

Query: 439 SHR 441
           ++ 
Sbjct: 418 TNE 420


>gi|300934550|ref|ZP_07149806.1| histidyl-tRNA synthetase [Corynebacterium resistens DSM 45100]
          Length = 428

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/410 (13%), Positives = 114/410 (27%), Gaps = 37/410 (9%)

Query: 57  IREEQNRT----GAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           IRE   R     G   + +P  +  +L+        D   KEM   ADR  +++   P  
Sbjct: 33  IREAFTRAAHQAGYEHIELPIFEDTNLFARGVGESTDVVSKEMYTFADRGGRSVTLRPEG 92

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +      H      LP         FR E        R R+       +  +     
Sbjct: 93  TAGVIRSVIEHNLDRGQLPVKLVYAGPFFRYERPQAG---RYRQLQQVGVEAVGVDDPYL 149

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIV----LADTGETQVFC 223
                 +     R     G +            P       EF+       +T       
Sbjct: 150 DAEVIALADRCYRTVGLTGQRLELTSLGDGSDRPAYRAKLQEFLHTLPLDEETARRADLN 209

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENKRVSARGI 282
               +D   P       D   +   +   +  +  T     + L  + +   + V     
Sbjct: 210 PLRVLDDKRPEMQDMLADAPLMLDHLSDSSHEHFETVTGMLDDLGVEYVINPRMVRGLDY 269

Query: 283 EVGHIFY-----FGTKYSLPMSATFKGADGK--DHYVQMGSYGIGAMRVVAAVIESSHDG 335
                F       G +  +     + G   +     +    +G+G  R + A+       
Sbjct: 270 YTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQDLSGIGFGLGVDRTLLALQAEGKS- 328

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFA 393
                  +    ++ +  +    +       ++   L   G  V   + D G + G+   
Sbjct: 329 -------ASDARRVDVYGVALGSEAKSRMA-RLVNELRAAGISVDMSYGDRGLK-GAM-K 378

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            AD  G    +++G   +    V +K      + +++L+ V+   S+   
Sbjct: 379 GADRAGAKFALVMGESELEAGNVALKDLAAHEQRNIALDAVVAELSNTLQ 428


>gi|320161174|ref|YP_004174398.1| histidyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
 gi|319995027|dbj|BAJ63798.1| histidyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
          Length = 426

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/420 (15%), Positives = 126/420 (30%), Gaps = 22/420 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   + P      + + A IRE   + G  E   P L+  DL+      +   ++     
Sbjct: 10  GTRDFYPEIMAVRNWLYARIREVSEKFGYQEYEGPFLERVDLYAAKSGEELVNEQSFVFQ 69

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           DR    +   P     +  +      +    P  ++     +R E   +    R+REF  
Sbjct: 70  DRGGDYIALRPELTPTLARMVAQRQ-NELVYPLRWWSFGPFWRYERPQKG---RTREFFQ 125

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA-ESGPIGGDLSHEFIVLADT 216
            +          +  +  ++    +  F  +GL S  ++   +     D+  E + + + 
Sbjct: 126 WNIDIIG---SQAIEADAELLAVAVEFFKSVGLTSQQVKLLVNNRRLMDVQLENLGIREG 182

Query: 217 GETQVFC-SKDFMDFPIPSENTDFDDIISLNSIV---EQWTAPYAATSDVHNEKLFDSLP 272
            +  VF         P+P       D       +   E      +        K    L 
Sbjct: 183 QKRDVFRLIDRKEKLPLPEWRQYAFDFGLTQEQLSGLESLLVNESLWETSDELKRVFELL 242

Query: 273 ENKRV---------SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           E   +           RG++      F  K      +   G    +    +G   +  + 
Sbjct: 243 EGMGIREYVEFAPQIIRGLDYYTGTVFEAKDLDGGRSILGGGHYDNLVANVGGEPLPGVG 302

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
                +  +   +      ++      ++      +        + ARL + G  V W  
Sbjct: 303 FAMGDVMITLVLEKYGKLPALETAPAQVLVTVFDLERLPQ-SFALAARLREQGLKVVWYP 361

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              ++  Q   AD  G    VI G   +S  +V +K      +E +S+E V        +
Sbjct: 362 EAAKLQKQLKFADRAGIRFAVIYGPDEISAGQVALKDLHQRNQELVSVENVGERVRQILA 421


>gi|146308514|ref|YP_001188979.1| histidyl-tRNA synthetase [Pseudomonas mendocina ymp]
 gi|166228598|sp|A4XY31|SYH_PSEMY RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|145576715|gb|ABP86247.1| histidyl-tRNA synthetase [Pseudomonas mendocina ymp]
          Length = 428

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/421 (12%), Positives = 115/421 (27%), Gaps = 26/421 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP    A   + + +    +  G  E+ +P ++  +L+        D   KEM  
Sbjct: 10  GMNDILPEQTPAWRYLESTLVSLLDGYGYKEIRLPIVEYTELFARGIGEGTDVVDKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN++++   P            H  +        +     FR E +P+ G  R    
Sbjct: 70  FLDRNEESLTLRPEGTAGCVRAVLEHGLAGGGQVQKLWYAGPMFRYE-KPQKGRYRQFHQ 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS------HE 209
           +  +A++       ++       +             +     S               E
Sbjct: 129 VGVEAFNLPGPDVDAELIVLTWRLWKKLGLADAVTLQLNSLGSSEARAAYRDALVAYLQE 188

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDII----SLNSIVEQWTAPYAATSDVHNE 265
                D    +   +         +E T    +           E         + +   
Sbjct: 189 RFDQLDEDSQRRLTTNPLRILDSKNEATQAVLVGAPTLGDYLDEESRLHFEGVKARLDAA 248

Query: 266 ----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               ++   L        R +        G + ++     + G   +         G   
Sbjct: 249 GIRYQINHKLVRGLDYYNRTVFEWVTDKLGAQGTVCAGGRYDGLVAQLGGKATPGVGFAM 308

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDV 379
                 ++  + D        +   +  +        +    A   +  RL     G  +
Sbjct: 309 GVERLVLLLETLDLLPAELNRAADVYVCAFG------EAAELAALTLTERLRDELPGLRL 362

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYA 438
             +  G    SQF  AD  G    +I+G   ++   V  K  R    ++ ++ + +  + 
Sbjct: 363 LLNSGGGSFKSQFKKADKSGARYALILGDDELAGRVVGCKPLRDDSEQQSVAWDALAEHL 422

Query: 439 S 439
           +
Sbjct: 423 A 423


>gi|229128599|ref|ZP_04257577.1| Histidyl-tRNA synthetase 1 [Bacillus cereus BDRD-Cer4]
 gi|228654792|gb|EEL10652.1| Histidyl-tRNA synthetase 1 [Bacillus cereus BDRD-Cer4]
          Length = 428

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 70/427 (16%), Positives = 127/427 (29%), Gaps = 41/427 (9%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 14  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 73

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 74  GKRELALRYDLTIPFAKVVA--MNPNLRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 128

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++       F  +  +   + ++    +      ES  I  +L+ + I+ 
Sbjct: 129 VDIVGVESVMAEAELMAMAFELFRTLNLEITIQYNNRKLLNGILESINIPTELTSDVILS 188

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT    +  ++    E +  P  A      
Sbjct: 189 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADFKEAFNNPLVADGVNEL 248

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           ++L   L       A GI    IF       L M                 S G G  R 
Sbjct: 249 QQLQQYL------IALGINENTIFNPFLARGLTMYTGTVYEIFLKDRSITSSIGSGG-RY 301

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARL 372
              +     D              +    +   + +   A            C +I  +L
Sbjct: 302 DNIIGAFRGDNMNYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGTELQCLQIAQQL 361

Query: 373 SKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
                  V  +  G ++      A+    P  +I+G   +S + V +++   G    + +
Sbjct: 362 RSTTSLKVELELAGRKLKRALNYANKENIPYVLIIGEDELSTNTVVLRNMKEGSEVKVPI 421

Query: 432 EEVINYA 438
             +  Y 
Sbjct: 422 SSLSRYL 428


>gi|206900708|ref|YP_002250689.1| histidyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
 gi|229558656|sp|B5YDT1|SYH_DICT6 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|206739811|gb|ACI18869.1| histidyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
          Length = 416

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/411 (14%), Positives = 117/411 (28%), Gaps = 20/411 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGR-YDSYGKEMLR 95
           G+   LP        +    R    +    E+  P  +  +L+   +G   D   KEM  
Sbjct: 8   GVQDILPDETPFWHLIENTARNLFEKYNYEEIRTPIFEFTELFIKGTGETTDIVMKEMYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+  +++   P     +   +  +        +  Y I   FR E        R R+F
Sbjct: 68  FQDKKGRSLTLRPEGTPGVIRAYLMNKVYATTPIWKVYYIGPMFRYERPQAG---RYRQF 124

Query: 156 LMKDAYSFDL-TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                       P       N        +        I     +         E +   
Sbjct: 125 HQLGVEVLGRKDPYIDFEIINLAIEFLKTLELENLEVEINSLGCTK--CRPAYREALKNY 182

Query: 215 DTGETQVFCS---KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            +    +      +     P+   ++  + II L     Q           H EK+ + +
Sbjct: 183 FSQYKDILSHIDQERLERNPLRILDSKDEKIIPLKENAPQPLDFLCDDCKNHFEKVLNYM 242

Query: 272 PENKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            E            RG++      F    +   +       G+   +     G     + 
Sbjct: 243 KEADLSFKISPKLVRGLDYYTRTVFEITTTSLGAQNAVVGGGRYDNLVETYGGPSTPGLG 302

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A+                   + SLI I    +       +I   L      V      
Sbjct: 303 FALGIERLILLLKQQNKIKIE-RPSLIFIAIEKEKYVKKAMEIAKTLRT-NYRVEMGSPE 360

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           E + +Q   AD L     + V ++ + ++ ++IK+  TG  +++ ++++  
Sbjct: 361 ESLRTQLKWADKLNSDYVIFV-NQGIENNILKIKNFKTGEEKEIKIKDIKE 410


>gi|67482754|ref|XP_656678.1| glycyl-tRNA synthetase [Entamoeba histolytica HM-1:IMSS]
 gi|56473893|gb|EAL51292.1| glycyl-tRNA synthetase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 627

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 78/289 (26%), Gaps = 25/289 (8%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRI-FHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                     +         +     +     G   +   A    +   +   +    + 
Sbjct: 329 LKTEMAHYAKDCWDAEIRLSYGWVECVGHADRGDFDLSNHARCSKVDQSVFIAYDEPKEV 388

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
            +  +  +K  M      ++       S      +             +   D +     
Sbjct: 389 KDVTLSFNKGVMGKKYKKDSQKLFAYASGLDEAAKEAVAKEVEETGMWKVTVDGINFEIE 448

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            +   I++G                 K   G +    +     G  RV+ AV+E S   +
Sbjct: 449 KANITIKIGT----------------KKVYGDNIIPNVIEPSFGVGRVLTAVLEHSFWVR 492

Query: 337 GIIWPDSVAPFKISLINIK-------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                 SV     S+  +K          +      E I             +     IG
Sbjct: 493 EDNEAKSVLSIPASIAPVKVGLFPLLTKLEFNNKIAE-IEKICKNGFLSFKSNTTAVAIG 551

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            ++A AD  G P  V V    +SD+ V ++ R T  +  + +++++   
Sbjct: 552 KKYAQADEAGIPFDVTVDYTSLSDNTVTLRDRDTTKQIRIPIDKLVETV 600



 Score = 50.9 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 2/79 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y   PLG     N+    R+         E+  P L    +   SG    +   M++
Sbjct: 41  AGLYDMGPLGCALKQNILQFWRKHFTTYENFFEVEGPILTPKCVLAASGHTAKFSDYMVK 100

Query: 96  LADRNDKAMIYGPTHEEVM 114
              +N          +   
Sbjct: 101 DL-KNGCCYRADHLLKTFY 118


>gi|317403339|gb|EFV83852.1| histidyl-tRNA synthetase [Achromobacter xylosoxidans C54]
          Length = 431

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/430 (13%), Positives = 115/430 (26%), Gaps = 31/430 (7%)

Query: 32  IHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-D 87
             + +   G+   LP      +    I+R      G   +  P L+   L+    G   D
Sbjct: 8   FQKVAAIRGMNDLLPGPSARWEQFEEIVRGWLRGYGYRNVRTPVLEHTRLFTRGIGEVTD 67

Query: 88  SYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
              KEM    D  +   +   P     +      H   Y   P   Y I   FR E   R
Sbjct: 68  IVEKEMYTFTDALNGESLTMRPEMTAGIVRASIEHNLLYDR-PQRVYSIGPVFRHERPQR 126

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-----AESGP 201
               +  +  ++         +             L +       +   +     A    
Sbjct: 127 GRYRQFHQIDVEALGFAGPDVDAELIVMLARLWKLLGLTDVRLELNSLGQPAERAAHRAA 186

Query: 202 IGGDLSHEFIVLADTGETQVFCSK-DFMDFPIPSENTDFD------DIISLNSIVEQWTA 254
           +   L     +L + G+ +++ +    +D   P+     D      D +   S       
Sbjct: 187 LIAHLEKHVDILDEDGKRRLYTNPLRVLDTKNPAMQEMADSAPRLFDFLGEESRAHFDGV 246

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
               T      +L   L          +        G++ ++     + G          
Sbjct: 247 CQRLTDAGIEYRLNPRLVRGLDYYNLTVFEWVTDRLGSQGTVCGGGRYDGLIELLGGKPA 306

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            + G          +    +    +   +          +    +  +    ++   L  
Sbjct: 307 PAVGFAIGMER---LLDLWEQSVQVEAPAECDVY-----VVHQGEDAQRLAARVGEDLRD 358

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIREDM 429
            G  V          SQF  AD  G  + VI+G+  V+     IK         G ++ +
Sbjct: 359 AGLAVVVHAGAASFKSQFKRADASGARVAVILGADEVASQTASIKFLRADAQGDGAQQQV 418

Query: 430 SLEEVINYAS 439
            L  + +  +
Sbjct: 419 PLAGLADVLN 428


>gi|331225507|ref|XP_003325424.1| hypothetical protein PGTG_07257 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309304414|gb|EFP81005.1| hypothetical protein PGTG_07257 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 671

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 95/360 (26%), Gaps = 29/360 (8%)

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           S+  E+                 E  +  + + H K +         +    + E +   
Sbjct: 311 SFRNEISPKQGLLRVREFTMAEIEHYVDPMDKRHDKFHEIENHKIKLLPRSVQAEGKTET 370

Query: 148 GVMRSREFLMKDAYSFDL--------TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
             M   E + K                    K   N   + + +              ++
Sbjct: 371 IEMTIGEAIEKQIVDNHTLGYFLARIDLFLRKIGINPDRLRFRQHMDNEMAHYASDCWDA 430

Query: 200 GPIGGDLSHEFIVLADTGET-----------QVFCSKDFMDFPIPSENTDFDDIISLNSI 248
                    E +  AD               ++   +   +     +N    D       
Sbjct: 431 EIHSSYGWIECVGCADRSAYDLTVHSVRTGTKLVVREPLKEVIEIEKNVPMFDKKLFGPR 490

Query: 249 VEQWTAPYAATSDVHNEKLFDSLPEN---KRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             Q       T    +E   + L +       S      G+ +             FK  
Sbjct: 491 FRQAAKVVEQTVLAFDEARLECLSKELETDGTSKIRASDGNEYELTKDILKIERKKFK-E 549

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQ 359
             +++   +     G  R++ +++E  +  +       V     S+  +K      +  +
Sbjct: 550 TTREYTPNVIEPSFGIGRILYSLLEHCYWARAEDVNRGVLSLPPSIAPVKVLIVPLSGTE 609

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
           V R     I  +L   G     DD    IG +++  D LG P  + V    V +  V ++
Sbjct: 610 VFRPLIRSISKKLRNAGIASRVDDSNASIGKRYSRNDELGTPFGITVDFGSVKNGTVTLR 669



 Score = 44.3 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     N+    R+         E+    +  A++   SG  D +  + + 
Sbjct: 98  AGLYDFGPPGSTLQSNILQEWRKHFIIEDEMSEIDTTVITLAEVLKTSGHVDKF-TDWMT 156

Query: 96  LADRNDKAMIYGPTHEEVMT 115
              +           E V+ 
Sbjct: 157 SDVKTGDIFRADHLVEAVLA 176


>gi|305666059|ref|YP_003862346.1| glycyl-tRNA synthetase [Maribacter sp. HTCC2170]
 gi|88710834|gb|EAR03066.1| glycyl-tRNA synthetase [Maribacter sp. HTCC2170]
          Length = 514

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 80/252 (31%), Gaps = 16/252 (6%)

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             +      E       G  + +  K   +  +    +      +      +  A YA  
Sbjct: 260 FRMREFEQMEMQFFIRPGSQKEWYEKWK-ETRLKWHLSLGMGEENYRFHDHEKLAHYADA 318

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     +      E + + +R            K+S      F     +++   +    I
Sbjct: 319 AADIEFRFPFGFKELEGIHSRTDFDLSQHE---KFSGKKLQYFDPELKENYVPYVVETSI 375

Query: 320 GAMRVVAAV---------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           G  R+  AV         +E+      +  P  +AP K +++ +   D    +   KI  
Sbjct: 376 GLDRMFLAVFSKSLKEEELENGSTRTVLKLPAVLAPTKAAVLPLVKKD-GLPEIAHKIID 434

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L     +V +D     +G ++   D  G P  + V  + + D  V I+HR T  +  + 
Sbjct: 435 DLK-WDFNVIYDGKDA-VGRRYRRQDAAGTPFCITVDHQTIEDQTVTIRHRDTMKQSRVD 492

Query: 431 LEEVINYASHRF 442
           + ++        
Sbjct: 493 IADLKGIIDKEV 504


>gi|332969950|gb|EGK08950.1| histidine--tRNA ligase [Kingella kingae ATCC 23330]
          Length = 430

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 60/411 (14%), Positives = 117/411 (28%), Gaps = 32/411 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
                  I++   + G  ++  P ++   L+V S     D  GKEM   +D ND   +  
Sbjct: 29  WQAFENQIQKWTRKFGYSQIRTPIVEQTGLFVRSIGEETDVIGKEMYTFSDSNDTLSLTL 88

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR--PRFGVMRSREFLMKDAYSFDL 165
                              + P   + +   FR E     R+                D+
Sbjct: 89  RPEGTASCLRAVVEHNLLHDAPRKLWYMGAMFRRERPQKGRYRQFHQVGIEALGFADADI 148

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT--GETQVFC 223
             E      +      +     L L S+  R E       L   F    D    E +V  
Sbjct: 149 DAEIIAMCADLWRELGILEHLTLELNSLGNREERAAHRAALVEYFSQYTDKLSDEEKV-- 206

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-------------DS 270
                  P+   +T   D+  + +   +        S  H + +                
Sbjct: 207 --RLEKNPLRLLDTKNPDLQEICNNAPRLVDFLGEDSQKHYQTVKSLLDGLGIQYVENPR 264

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           L        + +        G + ++     + G    +      +  IG    +  ++ 
Sbjct: 265 LVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLI--EELGGKPAASIGFAMGIERLLL 322

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
              D   +   D+   F +              A  K+   L + G +V       ++ +
Sbjct: 323 LVRDYGSLQVSDAPDVFVMQQG------DGATLAAMKLAQNLRENGFNVAQFSGSTKLKN 376

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASH 440
           QF  AD  G    +I+     +++ V IK  R    +  +   ++I+    
Sbjct: 377 QFKRADQSGARFGLIIAESEAAENTVTIKDLRGENGQITVPAAQMISQIKE 427


>gi|323338670|gb|EGA79886.1| Grs1p [Saccharomyces cerevisiae Vin13]
          Length = 590

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 6/142 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              +++   +     G  R++ +V E S   +      SV  F   +   K      ++ 
Sbjct: 427 EHVREYVPSVIEPSFGIGRIIYSVFEHSFWNRPEDNARSVLSFPPLVAPTKVLLVPLSNH 486

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++   L K       DD G  IG ++A  D LG P  V +  +   D  V +
Sbjct: 487 KDLVPVTTEVAKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESXXDHSVTL 546

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R +  +   S+E+VI     
Sbjct: 547 RERDSTKQVRGSVEDVIKAIRD 568


>gi|332020039|gb|EGI60490.1| Glycyl-tRNA synthetase [Acromyrmex echinatior]
          Length = 742

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/415 (12%), Positives = 119/415 (28%), Gaps = 77/415 (18%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R    +   LPF   QI   FR+E+ PR G++R REF M +   F
Sbjct: 303 FLRPETAQGIFVNFKRLLAFNQERLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHF 362

Query: 164 DLTPEGSKHSYNKMFVS----YLRIFHRLGLKSIPMRA----ESGPIGGDLSHEFIVLAD 215
               + S   +  +       Y       G  +  +       SG +  +    F+    
Sbjct: 363 CDPSDKSHPKFETVKDVDMLLYSACNQMDGKSAQRLTIGEAVSSGLVANETLGYFMARIH 422

Query: 216 TGETQV--------FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
               ++        F      +    + +    + ++    +E       +  D+     
Sbjct: 423 QFLLKIGIDSNRLRFRQHMSNEMAHYACDCWDAECLTSYGWIECVGCADRSAYDLTQHTK 482

Query: 268 FDSLP---ENKRVSARGIE----------VGHIFYFGTKYSLPMSA-----------TFK 303
              +    E K  + + ++          +G  F   +K      A              
Sbjct: 483 ATGVKLVAEKKLPAPKTVDVCEIMPNKVLIGKTFKKDSKVVQDALAALNKKEIESLERVL 542

Query: 304 GADGKDHYVQMGS------------------------------YGIGAMRVVAAVIESSH 333
              G+       +                                 G  R++ A+ E + 
Sbjct: 543 NEKGEYELTLPNNVVVKITKDMIEVKRYQKIVHVEEITPSVIEPSFGIGRIMHALFEHNF 602

Query: 334 DGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
             +      +       +  +K      + +       +K+   L+K       DD    
Sbjct: 603 QAREGDEKRTYFSLPPVVAPLKCSVLPLSGNDEFVPFVKKLSQDLTKADVSHKVDDSSGS 662

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHR 441
           IG ++A  D +  P  + +    +       ++ R +  +  ++L+E+ +     
Sbjct: 663 IGRRYARTDEIAIPFGITIDFDTLKMPHSATLRDRDSMGQVRINLDELPSVMRDL 717



 Score = 42.4 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 17/90 (18%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIR------EEQNRTGAIEMSVP 72
           L+ R   + Q         G Y + P+G     N+    R      E+      +E+   
Sbjct: 135 LLKRRFFLDQSFAIYGGITGQYDFGPMGCSLKTNLINAWRNFFVLEEQM-----LEVDCS 189

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDK 102
            L    +   SG  + +   M++     + 
Sbjct: 190 ILTPEPVLKASGHVERFADLMVKDVKTGEC 219


>gi|145219504|ref|YP_001130213.1| histidyl-tRNA synthetase [Prosthecochloris vibrioformis DSM 265]
 gi|189082304|sp|A4SE02|SYH_PROVI RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|145205668|gb|ABP36711.1| histidyl-tRNA synthetase [Chlorobium phaeovibrioides DSM 265]
          Length = 426

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/409 (11%), Positives = 106/409 (25%), Gaps = 26/409 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRL-ADRNDKAMIY 106
              V  ++R         E+  P  +  +L+        D  GKEM     D   +++  
Sbjct: 21  WQLVEGVVRRLAGLYAFGEVRTPVFEYTELFQRGIGATTDIVGKEMFSFLPDPQGRSLTL 80

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +           +      + I   FR E        +  +F  +   +    
Sbjct: 81  RPEMTAGVMRAALQRNLLSQAPLHKLFYISDLFRKERPQAGRQRQFTQFGAELLGASSPA 140

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-EFIVLAD-----TGETQ 220
                 S+       L +       +     E      D     F+  AD     + E  
Sbjct: 141 AVAEVLSFMMGVFDALGLKGLRLRINTLGDLEDRARYRDALRAYFLPFADELDESSKERL 200

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT------SDVHNEKLFDSLPEN 274
                  +D   P+          L   V+                   + ++   L   
Sbjct: 201 EKNPLRILDSKNPALKELIAAAPRLFDFVKAEGVAEFEEVLSLLRDRGVSYEVDHLLVRG 260

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                           G + ++     + G     G    +    + +G  R++ A+ + 
Sbjct: 261 LDYYCHTAFEVTSSELGAQDAIGGGGRYDGLARELGGGKDMPAVGFAVGMERLLIAMEKQ 320

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                       V      L               ++  +L + G     D  G  + +Q
Sbjct: 321 GLLEGLKPVGPKVFVVVQQL--------ELSGHAMQVAFQLRRAGISTELDLAGRSMKAQ 372

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              A+ LG    + +G       +  +K+ ++  +  ++L+ +      
Sbjct: 373 MREANRLGAAYALFIGQTEFESGQYGLKNLVSSEQSTLTLDSITETLRE 421


>gi|50904253|gb|AAT87968.1| Histidyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
          Length = 438

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 61/417 (14%), Positives = 120/417 (28%), Gaps = 29/417 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++ R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 25  LPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 84

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 85  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 141

Query: 159 DAYSFDL-TPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG            I       
Sbjct: 142 GVECFGAANPATDVETIAMAYHLFEKLGIKDVTLHLNSLGSPESRAAYRQALIDYLTPMR 201

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    +   S+ + + E+  A + A  D+      
Sbjct: 202 DQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVKDMLEALDI 261

Query: 269 DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +   V         IF F     G+  ++     +    G     +   +G G   
Sbjct: 262 PYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGL 321

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++         I  +      +      +          ++   + + G     D 
Sbjct: 322 ERLLMVIEKQGITLPIETEMDVYLAVLGDGANSK-------ALELVQAIRRQGFTAERDY 374

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+++   ++
Sbjct: 375 LGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQEVEVSFEDMMTNFAN 431


>gi|34596188|gb|AAQ76784.1| bifunctional aminoacyl-tRNA synthetase [Herdmania curvata]
          Length = 187

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 5/157 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      + + A    E  + G      P   S   L  E    + +  E+  
Sbjct: 24  SGCYILRPWSYGIWERIKAFFDTEIKKLGVENCYFPIFVSQSALEKEKEHIEDFAPEVAW 83

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   +   ++S+R+LP  + Q     R E +     +R
Sbjct: 84  VTKSGQSELAEPIAIRPTSETVMYPAYAKWVQSHRDLPLRYNQWCNVVRWEFKHPQPFLR 143

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL 188
           +REFL ++ +S   T   ++    ++   Y +++   
Sbjct: 144 TREFLWQEGHSAFATKPEAEKEVLQILELYAQVYEDY 180


>gi|156740146|ref|YP_001430275.1| histidyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
 gi|156231474|gb|ABU56257.1| histidyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
          Length = 454

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/435 (14%), Positives = 122/435 (28%), Gaps = 46/435 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G+   LP       ++   +     R G   +  P ++ A+     G+     K + R  
Sbjct: 10  GMRDHLPSAMILRQHIINTLTSVFERYGFEPLQTPIVEYAETLD--GKIGDDEKLIYRFE 67

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D   + +         +  +   +       P+  Y I   +R E   R G  R RE   
Sbjct: 68  DHGGRKVALRYDQTVPLARVVAQYQ-GQLTFPWRRYAIGQSYRGE---RPGRGRYRELWQ 123

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--------------------------- 190
            D          +      +    L      G                            
Sbjct: 124 ADIDIVGSASPVADAEILAVLTDALTALGFTGFTTLISHRQVLGGIARVSGLDDASAGNV 183

Query: 191 KSIPMRAESGPIGGDLSHEFI--VLADTGETQVFCSKDF--MDFPIPSENTDFDDIISLN 246
                + +   I G  +      V  D  E  +     +   D  +        D     
Sbjct: 184 YRAIDKLDKIGIDGVRNELLQSGVTPDAAERILALIDLYGSADDVLNELAQRLHDDERAQ 243

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             ++   A       +   +   ++ P      ARG+       F +    P   +  G 
Sbjct: 244 QAIDNLRAIIGYARAMGVPEERIAIAPR----LARGLSYYTGAVFESIIQEPPMGSLLGG 299

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
              D  + M +        +A  IE  HD    +     +      +    + ++  +  
Sbjct: 300 GRYDELIGMFAGRSIPTVGLAFGIERLHDVMEALGMGPESRTIAVALVTLFNPEMAME-S 358

Query: 366 EKIYARLSKVG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
             +   L + G   +   D   E++G Q   AD  G P  +++G   ++  +V +KH  +
Sbjct: 359 LGLAQELRRAGLMIETTLDPS-EKLGRQLQYADRRGIPYALVLGPDELARGEVVVKHLRS 417

Query: 424 GIREDMSLEEVINYA 438
           G +  ++   V    
Sbjct: 418 GEQRSVARSAVAGML 432


>gi|224044587|ref|XP_002193565.1| PREDICTED: glycyl-tRNA synthetase [Taeniopygia guttata]
          Length = 754

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 75/282 (26%), Gaps = 22/282 (7%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 444 FRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLIAEKHLKE 503

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV-------------GHI 287
                    E              + + + L          +E              G  
Sbjct: 504 PRTVNIVQFEANKGAIGKAYKKDAKVVMEYLSMCDECYINEMEQLLNDKGEFTVETEGKT 563

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F   TK  + +         ++    +     G  R++  V E +   +      +   F
Sbjct: 564 F-LITKDMVTVKRFXXCVPVEEIIPNVIEPSFGIGRIMYTVFEHTFRIREGDEQRTYFSF 622

Query: 348 KISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
              +   K      + +Q      +++   L++ G     DD    IG ++A  D +G  
Sbjct: 623 PAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRTGISHKVDDAAGSIGRRYARTDEIGVA 682

Query: 402 LQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHR 441
             + +    V+       ++ R +  +    + E+       
Sbjct: 683 FGITIDFDTVNRTPHTATLRDRDSMRQIRAEISELPGIIRDL 724



 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R         +E+    L    +   SG  D +   M++
Sbjct: 160 SGLYDFGPVGCALKNNIIQAWRHHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK 219

Query: 96  LADRNDK 102
                + 
Sbjct: 220 DVKNGEC 226


>gi|254580769|ref|XP_002496370.1| ZYRO0C16830p [Zygosaccharomyces rouxii]
 gi|238939261|emb|CAR27437.1| ZYRO0C16830p [Zygosaccharomyces rouxii]
          Length = 663

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 6/142 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              ++    +     G  R++ +V E S   +      SV  F   +   K      ++ 
Sbjct: 497 EHVREFVPNVIEPSFGIGRIIYSVFEHSFWSRPEDTARSVLSFAPLVAPTKVLLVPLSNH 556

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++  +L         DD G  IG ++A  D LG P  V +      D  V +
Sbjct: 557 KDLAPVTAQVSKQLRTEKIPFRVDDSGVSIGKRYARNDELGTPFGVTIDFDSCKDGSVTL 616

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R +  +   S ++VI     
Sbjct: 617 RERDSTKQVRGSTKDVIEAIRS 638



 Score = 48.6 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     NV    R+        +E+    L   D+   SG  D +      
Sbjct: 41  SGLYDYGPPGCAFQANVVDYWRKHFILEEDMLEVDCTMLTPHDVLKTSGHVDKFSD--WM 98

Query: 96  LADRNDKAMI 105
             DR    + 
Sbjct: 99  CKDRKTGEIF 108


>gi|207109770|ref|ZP_03243932.1| threonyl-tRNA synthetase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 145

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 7/148 (4%)

Query: 298 MSATFKGADGK-DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
               F       +  V +    +G+     A++     G    +   VAP +I+LI I  
Sbjct: 1   FKLAFTNERNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFF---VAPTQIALIPIN- 56

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
             +       K+   L K    V   D  + +  +  +A+    P+ +++G++ +    +
Sbjct: 57  --EEHHVFALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEMETEIL 114

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFSN 444
            I+ R    +  M L+E +N    +   
Sbjct: 115 SIRDREKQAQYKMPLKEFLNMVESKMQE 142


>gi|88607924|ref|YP_504747.1| histidyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
 gi|123763830|sp|Q2GLK4|SYH_ANAPZ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|88598987|gb|ABD44457.1| histidyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
          Length = 420

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/416 (14%), Positives = 118/416 (28%), Gaps = 43/416 (10%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +  + +E   R G + +  P  +  +++ ++     D  GKEM   ADR    +   P  
Sbjct: 26  IQNVAQEIGERFGFMPVQTPIFEFQEVFCKTLGDSTDVIGKEMYTFADRGGDVLALRPEF 85

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +  +  S        P   +     FR E   +    R R+F   +   F      +
Sbjct: 86  TAAIVRLLLSEK---MQPPARLFTAGPVFRYERPQKC---RQRQFHQINYECFGAGGSQA 139

Query: 171 KHSYNKMFVSYLRIF----------HRLGLKSIP--MRAESGPIGGDLSHEFIVLADTGE 218
                 +    L +F          + LG        RA           E    +    
Sbjct: 140 DAEIISLAYCVLEVFGLHCDVTLEINSLGSSECMNAYRASLLSFFEKYRSELSEDSRRRL 199

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                           E       I      E   +       + N  +  ++   + V 
Sbjct: 200 QTNPLRILDSKDATDKEILSTAPSIEDFYDAETRASFEGLKDHLTNLGIPYAVNR-RLVR 258

Query: 279 ARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 G +F       G + ++     +           + + G        A +    
Sbjct: 259 GLDYYTGTVFEYKTSSLGAQDAIIAGGRYDNLVAAMGGENVPAIGFAGGVERLAAL---- 314

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK--VGCDVFWDD-MGEQIGS 390
                    S +  +   + I    +       +I   + +   G  V  D     + G 
Sbjct: 315 --------MSYSRTRKFCVFILPISEEVVSHAMRITYEIRRTLSGVQVICDIVTRLKTG- 365

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
               AD     + +I+G + V+ + V  K+ LTG +E++S+  +  Y     +  +
Sbjct: 366 -IKRADRQKADIALILGDEEVNRNAVSCKNMLTGKQEEISISNITEYLKAMMAERQ 420


>gi|194871168|ref|XP_001972794.1| GG15715 [Drosophila erecta]
 gi|190654577|gb|EDV51820.1| GG15715 [Drosophila erecta]
          Length = 767

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/276 (11%), Positives = 74/276 (26%), Gaps = 22/276 (7%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                + + +              ++  +      E +  AD     +          + 
Sbjct: 456 IKPECLRFRQHMSNEMAHYACDCWDAEILTSYGWVECVGCADRSAYDLGQHTAATGVRLV 515

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--------------NKRVSA 279
           +E             +         T     + + D+L +                    
Sbjct: 516 AEKRLPAPKTVEVCEIVPNKQALGKTFKKEAKNITDALAKLSLEEITKVEEQLTGDGQYK 575

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
                G     G        +T K    ++    +     G  R++ +++E S   +   
Sbjct: 576 LTTADGQSHELGKDTISVKHST-KTVHVEEFIPSVVEPSFGIGRIMYSLLEHSFQCREGD 634

Query: 340 WPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                      +  IK      +++   +   +K+ + L+K       DD    IG ++A
Sbjct: 635 EQRCYFTLPPLVAPIKCSILPLSNNTDFQPYTQKLSSALTKAELSHKVDDSSGSIGRRYA 694

Query: 394 VADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIRED 428
             D +  P  + V    + +   V ++ R T  +  
Sbjct: 695 RTDEIAIPYGITVDFDTLKEPHTVTLRDRNTMKQVR 730



 Score = 42.0 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+ A+ R+        +E+    L   
Sbjct: 161 LLKRRFFYDQSFAIYGGITGQYDFGPMGCALKSNILALWRQYFALEEQMLEVDCSILTPE 220

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  + +   M++     + 
Sbjct: 221 PVLKASGHVERFADLMVKDVKTGEC 245


>gi|300782829|ref|YP_003763120.1| histidyl-tRNA synthetase [Amycolatopsis mediterranei U32]
 gi|299792343|gb|ADJ42718.1| histidyl-tRNA synthetase [Amycolatopsis mediterranei U32]
          Length = 429

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 123/412 (29%), Gaps = 34/412 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   +LP        V   + +   R G +    P L+SA+++  +SG+ +   K++  L
Sbjct: 12  GTRDFLPAEMSVRTQVFGHLYDVLERRGFLRYDGPILESAEIYERKSGQ-ELADKQLYTL 70

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +   P     +  +     KS  + P  +Y      R E   R    R RE  
Sbjct: 71  TDKGGRRLALRPEMTPSVARMIAGSAKS-LSFPVRWYSHPNCHRYEAPQRG---RVREHW 126

Query: 157 MKDAYSFDLTPEGSK-HSYNKMFVSY-------LRIFHRLGLKSIPMRAESGPIGGDLSH 208
             +A  F       +   +  +                R+  +++   A +   G    H
Sbjct: 127 QINADIFGSDSANCEIEIFELVHDMMAALGATPDMFVLRVNDRNLLTSALTDVAGVSADH 186

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
              V A     + +  +   +       +D        ++           ++V  E   
Sbjct: 187 LSQVFALVDRWEKYPREKLAESAGEIGLSDKQFEKLAETLDAGEALLDELPAEVRAESNL 246

Query: 269 --------DSLPENKRVSARGI--EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                    SL + + +  RG+      +F           A F G    D         
Sbjct: 247 VRVLNSSAGSLVKYEPIIVRGLAYYTSTVFEVFDTSPENRRALFGGGRYSDLASMFTPQQ 306

Query: 319 IGAMRVVAA--VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           I  +        +    D  G+          + +       +   DA   +   L + G
Sbjct: 307 IPGIGFGMGDVTLIDFLDTHGLTPAPRSEVDVMVIPVT----EDLADAARSVAGSLRQAG 362

Query: 377 CDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
                  +    ++G +   AD  G    VIVG +  +   V ++   T  +
Sbjct: 363 LRTSTPIEHR--KLGKELTRADKAGAVAVVIVGQEDWAAGNVTVRSLATREQ 412


>gi|33519979|ref|NP_878811.1| histidyl-tRNA synthetase [Candidatus Blochmannia floridanus]
 gi|39932114|sp|Q7VRR8|SYH_BLOFL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|33504325|emb|CAD83217.1| histidyl-tRNA synthetase [Candidatus Blochmannia floridanus]
          Length = 433

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/422 (12%), Positives = 112/422 (26%), Gaps = 21/422 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G++  LP        +  +++   N  G  E+  P ++  DL+  S G   D   KEM  
Sbjct: 16  GMHDCLPKDVIQWQYIEDVLKTILNGYGYNEIRFPIIECTDLFKRSIGEVTDVVEKEMYT 75

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D++   +   P            +   Y   P   + +   FR E   +    +  +F
Sbjct: 76  FIDQHGNDLTLRPEGTSGCVRAGIENSLFYHQEP-RLWYMGPMFRRERPQKGRYRQFHQF 134

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
             +                 N+ +       +     +      S  I       F+   
Sbjct: 135 SAEAFGCVGPDIDVELILITNRCWKELGISNYLTLELNSIGLLSSRMIYRKKLISFLEKN 194

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF------ 268
                     +     P+   +T    I  L +     +      S  H   L       
Sbjct: 195 -KHNLDDSSKRRLYSNPMRILDTKNVKIKELLAHAPVLSDYLDDCSKNHFLNLCRLLDIA 253

Query: 269 -------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                    L        R +        G K ++     +     +     + + G   
Sbjct: 254 NVTYIVNPYLVRGLDYYNRTVFEWVTDKLGVKKTICAGGRYDDLIKQLGGGSIPAVGFAI 313

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                 ++        I   +      +  +    + +      E I  +L      +  
Sbjct: 314 GLERVVLLMKLIKSSIINTRNVYIDVYLIRLG-TYYQEYSIKLSEHIREKLP--FLRLMV 370

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D  G     Q   A+       ++V  K   +  + +K   +  +E +  +E+I      
Sbjct: 371 DCGGGNFKQQIDRAEKNNSRFVIVVDDKNFFEQTIILKELQSKKQEILKYDEIILKLRKI 430

Query: 442 FS 443
           ++
Sbjct: 431 YN 432


>gi|325568592|ref|ZP_08144885.1| histidine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325157630|gb|EGC69786.1| histidine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 449

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/409 (13%), Positives = 111/409 (27%), Gaps = 17/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         E+  P  +  ++   S     D   KEM    D+ ++ +   
Sbjct: 37  WQFVEETARLVFRDYQFNEIRTPIFEHFEVIARSVGDTTDIVSKEMYDFYDKGERHVTLR 96

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P+  + +   FR E   +    R R+F       F  
Sbjct: 97  PEGTAPIARSYVENKLFGPEHTKPYKVFYMGPMFRYERPQKG---RLRQFHQIGVEVFGS 153

Query: 165 LTPEGSKHSYNKMFVSYLR--------IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             P     +       Y +        + + LG K          I     HE  +  D+
Sbjct: 154 ANPATDVETMAMAMDFYRQLGLSQLRLVINSLGDKETRQNYRQALIDYLAPHEAELSEDS 213

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +     D  S+ + +     A +   + + +        ++ 
Sbjct: 214 KRRLHENPLRVLDSKDKRDQKFVADAPSILDYLTPDAKAHFETVTSMLDALEIPYEVDSN 273

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF   +      +     A G+ +++     G        A+       
Sbjct: 274 MVRGLDYYTHTIFEIMSDAPKMGAQATICAGGRYNHLVEELGGPETPGFGFALGIERLLI 333

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +         +    Q       K+   +   G     D M  +  +QF  A
Sbjct: 334 TMEAEEVVIPALNELDAYVVGLGQETNLEALKVVQAIRNFGFSADRDFMDRKAKAQFKSA 393

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D  G  L + +G   +++  + IK   +   +   L ++       +  
Sbjct: 394 DKQGARLVLTLGETELAEQVINIKSMASREEKQFPLADLYARFDEIYDE 442


>gi|291613882|ref|YP_003524039.1| histidyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
 gi|291583994|gb|ADE11652.1| histidyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
          Length = 423

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 57/421 (13%), Positives = 106/421 (25%), Gaps = 23/421 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP           ++R+     G   + +P ++   L+  + G   D   KEM  
Sbjct: 11  GMNDILPDEAGLWLWFEEVVRDWLEAYGYRNIRMPLVEPTALFKRAIGEVTDIVEKEMYS 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMR 151
             D  +   +                     N P   Y     FR E       R     
Sbjct: 71  FRDDLNGDELTLRPEGTASCVRAVLQHNLLYNAPQRLYYSGPMFRHERPQKGRYRQFHQI 130

Query: 152 SREFLMKDAYSFDLTPEGSKH--SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
             E +       D                       + LG  +   R     I     H+
Sbjct: 131 GVEAMGFAGPDIDAEQIVMCARLWKKLGIRDVALQINTLGDVAARQRHREKLIAYFEQHK 190

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
            ++ AD            +D   P+          L   +++    +        ++   
Sbjct: 191 DVLDADGQRRLYSNPLRILDTKNPAMQELVAAAPKLMDELDEDAITHFEAVQAILQQHGI 250

Query: 270 S------LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           +      L        R +        G + ++     F G   +       + G     
Sbjct: 251 AFEINPRLVRGLDYYNRTVFEWVTTRLGAQGTICAGGRFDGLIEQIGGKPAPACGFAMGV 310

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
                +      +    P  V              +  R    ++   L   G  V    
Sbjct: 311 ERLLALLQEDGMQNPAAPLDVYVVHQG--------EQARIQAWRVAEDLRDGGLRVLLHC 362

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHRF 442
            G    SQ   AD        I+G   V+ + V +K  R  G ++ + L+++ +      
Sbjct: 363 GGGSFKSQMKKADASAAVCAAIIGDDEVAANVVMLKPLRSGGEQQRVGLDDLQHKVRELI 422

Query: 443 S 443
            
Sbjct: 423 K 423


>gi|257867151|ref|ZP_05646804.1| histidyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257873486|ref|ZP_05653139.1| histidyl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257801207|gb|EEV30137.1| histidyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257807650|gb|EEV36472.1| histidyl-tRNA synthetase [Enterococcus casseliflavus EC10]
          Length = 432

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/409 (13%), Positives = 112/409 (27%), Gaps = 17/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         E+  P  +  ++   S     D   KEM    D+ ++ +   
Sbjct: 20  WQFVEETARLVFRDYQFNEIRTPIFEHFEVIARSVGDTTDIVSKEMYDFYDKGERHVTLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P+  + +   FR E   +    R R+F       F  
Sbjct: 80  PEGTAPIARSYVENKLFGPEHTKPYKVFYMGPMFRYERPQKG---RLRQFHQIGVEVFGS 136

Query: 165 LTPEGSKHSYNKMFVSYLR--------IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             P     +       Y +        + + LG K          I     HE  +  D+
Sbjct: 137 ANPATDVETMAMAMDFYRQLGLSQLRLVINSLGDKETRQNYRQALIDYLAPHEAELSEDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +     D  S+ + +     A +   + + +        ++ 
Sbjct: 197 KRRLHENPLRVLDSKDKRDQKFVADAPSILDYLTPDAKAHFETVTGMLDALEIPYEIDSN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF   ++     +     A G+ +++     G        A+       
Sbjct: 257 MVRGLDYYTHTIFEIMSEAPKMGAQATICAGGRYNHLVEELGGPETPGFGFALGIERLLI 316

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +         +    Q       K+   +   G     D M  +  +QF  A
Sbjct: 317 TMEAEEVVIPALNELDAYVVGLGQETNLEALKVVQAIRNFGFSADRDFMDRKAKAQFKSA 376

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D  G  L + +G   +++  + IK   +   +   L ++       +  
Sbjct: 377 DKQGARLVLTLGETELAEQVINIKSMASREEKQFPLADLYARFDEIYDE 425


>gi|303232605|ref|ZP_07319290.1| histidine--tRNA ligase [Atopobium vaginae PB189-T1-4]
 gi|302481091|gb|EFL44166.1| histidine--tRNA ligase [Atopobium vaginae PB189-T1-4]
          Length = 436

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/427 (11%), Positives = 101/427 (23%), Gaps = 37/427 (8%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKEMLRLADRND 101
            +   +  A+ R   +  G   +  P L+    +       S   D   KEM R+     
Sbjct: 16  MRLWQHAVAVARSIFDTFGFEMIETPALEQVATFVHGIGESS---DVVRKEMFRVYSAAL 72

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK-----------FRDELR---PRF 147
              +     E+ +    R  ++           ++             +  E      R 
Sbjct: 73  LDGVMQHGSEDHLKAKQRMALRPEGTAGVVRACVEHNFIQGGANDTRLWYAEAMFRGERP 132

Query: 148 GVMRSREFLMKDAYS-FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              R R+F            P         +   Y  +   L    + + +         
Sbjct: 133 QKGRLRQFHQIGVEWLAAPDPAADAECIMMLMKFYTTMGIPLDKLQLRINSMGDTECRPA 192

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-----------NSIVEQWTAP 255
               +           C        I           +            + + +     
Sbjct: 193 YRALVQAYIKKHADSMCEDCLERAEINPLRVFDCKNETCQAIMQDAPLYRDHLCDACAEH 252

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y  T    ++     + +   V         +F      +   +    G       ++ G
Sbjct: 253 YVQTKHFLDQLHLSYIEDPTLVRGLDYYTRTVFEVECPDAGVGAIGGGGRYDNLVELEGG 312

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
               G      A+                       + +    Q  R     +   L   
Sbjct: 313 HPCCGLG---WALGFERVALALAALNVEPPAPSFPFVYVAYTSQQERMYAFSVSNMLRDS 369

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                       + +QF  AD       V++G   V+ ++V ++   T  +E ++L+E+ 
Sbjct: 370 HIRCESSYQMRSLKAQFKQADKYNARYCVVIGEAEVAANEVTLRDMQTHEQERVALDELA 429

Query: 436 NYASHRF 442
                R 
Sbjct: 430 AKLKARM 436


>gi|227498855|ref|ZP_03928995.1| seryl-tRNA synthetase [Acidaminococcus sp. D21]
 gi|226904307|gb|EEH90225.1| seryl-tRNA synthetase [Acidaminococcus sp. D21]
          Length = 424

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 75/216 (34%), Gaps = 14/216 (6%)

Query: 34  QHSKG-IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           + S G  Y +L LG +    V   + ++   + G  E+  P + + +    +G+   + +
Sbjct: 156 KVSGGRFYYYLGLGARLERAVYNFMLDQHTQKDGYTEVIPPYIVNRETMTGTGQLPKFHE 215

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRF 147
           +M RL       M   PT E  +T+ +R  I     LP         FR E     R   
Sbjct: 216 DMYRLE---GMEMYLIPTAEVPLTNYYRDEIIDGAKLPIYLTAFTPCFRAEAGSAGRDTR 272

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS 207
           G++R  +F   +   F    +               I   LGL    +   +G +G   +
Sbjct: 273 GLIRQHQFHKVEMVKFTKPEDSFDELEKLTHD-AEGILQALGLPYHVVCLCTGDLGFSAT 331

Query: 208 H----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                E    A     ++    + +DF     N  F
Sbjct: 332 KCYDIEVWFPAQNKYREISSCSNCVDFQARRANIRF 367


>gi|331703343|ref|YP_004400030.1| histidyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801898|emb|CBW54051.1| Histidyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 414

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 61/411 (14%), Positives = 129/411 (31%), Gaps = 30/411 (7%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAM 104
            K  + V   ++E  ++    E+  P  +S +L++ S     D   KEM    D+ ++++
Sbjct: 16  AKLWNKVETKLKEILDQFNYSEIRTPMFESKELFIRSIGSTTDIVSKEMYEFVDKKNRSL 75

Query: 105 IYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           +  P     +   +  + + +  NLP   Y I   FR E        R R+F       F
Sbjct: 76  VLKPEGTASVVRAVIENKLYAEENLPLKVYYISPMFRYERPQNG---RYRQFHQLGIEVF 132

Query: 164 DLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
                       N       +      +K       +G    D   E        +    
Sbjct: 133 GSDSIQQDYEVLNIATKIINQFKLNKNIKIYTNFLITGKNREDYILELKKYLSDFKLCND 192

Query: 223 CSKDFMDFPIPSENTDFDDI------ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           C+      P+   +   DD          + + ++    Y  T ++  +     + ++K 
Sbjct: 193 CNTRLEKNPLRVLDCKIDDKQFKNVPSMQDFLTKEQKTRYDQTLELFKKTNISVIHDDKL 252

Query: 277 VSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           V       G IF         + ++     +     +   + + + G G        I  
Sbjct: 253 VRGLDYYTGFIFEIKYLNNNNEQTIIAGGRYNNLVNEIGNINLAACGFGMGLERFINIIK 312

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG---EQI 388
             +   +    ++  + I +      D +  +  ++I      +G      D       +
Sbjct: 313 EQNSNLVNQKTNIDLYTICI------DDLAIELNQQILDLTRSIGLKA---DSNYYHLSL 363

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            S    AD L     +I+GS     ++  IK ++   +   +L + I    
Sbjct: 364 KSALKKADKLNPKYVIILGSNEAKTNEFIIKDQINKTQIKTTLTKFIKDLK 414


>gi|261209229|ref|ZP_05923621.1| histidyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289566145|ref|ZP_06446580.1| histidyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|294614200|ref|ZP_06694120.1| histidyl-tRNA synthetase [Enterococcus faecium E1636]
 gi|260076775|gb|EEW64510.1| histidyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289162090|gb|EFD09955.1| histidyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|291592976|gb|EFF24565.1| histidyl-tRNA synthetase [Enterococcus faecium E1636]
          Length = 430

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/403 (12%), Positives = 112/403 (27%), Gaps = 13/403 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         EM  P  +  ++   S     D   KEM    D+ ++ +   
Sbjct: 20  WQFVEETARLLFRDYQYNEMRTPIFEHYEVISRSVGDTTDIVSKEMYDFYDKGERHVTLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  H         PF  + +   FR E   +  + +  +  ++   S + 
Sbjct: 80  PEGTAPIVRSFVEHKLFGPEYAKPFKTFYMGPMFRYERPQKGRLRQFHQIGVEAFGSENP 139

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             +         F   L I     + +     E+         ++++  ++ E      +
Sbjct: 140 ATDVESMVMALDFFKQLGITQIRLVINSLGDKETRQAYRQALIDYLLPFES-ELSEDSKR 198

Query: 226 DFMDFPIP--------SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
              + P+          +    +    L+ + E     +     + N        ++  V
Sbjct: 199 RLHENPLRVLDSKDKRDQKFVAEAPSILDYLSEPAQKHFDTVVSMLNALAVPYEIDSNMV 258

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                    IF   +      +     A G+   +     G        A+         
Sbjct: 259 RGLDYYTHTIFEIMSDAPKMGAQATICAGGRYDNLVEELGGPSTPGFGFAMGIERLLLTM 318

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                 +  F      + A          K+   +   G     D M  +  +QF  AD 
Sbjct: 319 EAEEVVIPAFNELDAYVVALGDETNIEALKVVQAIRNFGFSADRDFMNRKAKAQFKTADK 378

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
               L +++G   ++   + +K   +   +   LEE+  +   
Sbjct: 379 ANAKLVLVIGEDELASQTINVKAMASRKEKSFPLEEIYEHFDE 421


>gi|586057|sp|P38088|SYG_YEAST RecName: Full=Glycyl-tRNA synthetase 1; AltName: Full=Diadenosine
           tetraphosphate synthetase; Short=AP-4-A synthetase;
           AltName: Full=Glycine--tRNA ligase 1; Short=GlyRS 1;
           Short=GlyRS1
 gi|536402|emb|CAA85078.1| GRS1 [Saccharomyces cerevisiae]
 gi|565058|emb|CAA55623.1| probable transfer RNA-Gly synthetase [Saccharomyces cerevisiae]
          Length = 667

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 6/142 (4%)

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHD 358
              +++   +     G  R++ +V E S   +      SV  F   +   K      ++ 
Sbjct: 497 EHVREYVPSVIEPSFGIGRIIYSVFEHSFWNRPEDNARSVLSFPPLVAPTKVLLVPLSNH 556

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++   L K       DD G  IG ++A  D LG P  V +  +   D  V +
Sbjct: 557 KDLVPVHHEVAKILRKSQIPFKIDDSGVSIGKRYARNDELGTPFGVTIDFESAKDHSVTL 616

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           + R +  +   S+E VI     
Sbjct: 617 RERDSTKQVRGSVENVIKAIRD 638



 Score = 50.5 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G    +N+    R+        +E+    L   ++   SG  D +   M R
Sbjct: 41  SGLYDYGPPGCAFQNNIIDAWRKHFILEEDMLEVDCTMLTPYEVLKTSGHVDKFSDWMCR 100


>gi|305662506|ref|YP_003858794.1| histidyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
 gi|304377075|gb|ADM26914.1| histidyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
          Length = 429

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 59/432 (13%), Positives = 132/432 (30%), Gaps = 40/432 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   ++P     +  +    +    R G  E+  PTL++  L+  +SG  +   + M   
Sbjct: 10  GFRDYIPPDSDIITWICDSFKIIVKRFGYKEIKTPTLENFKLFALKSG--EEIRESMFVF 67

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+ ++ +   P     +  ++   +++       FY   +   DE +      R REF 
Sbjct: 68  KDKAEREVALRPEVTPSVIRVYLRELRNIPKPLRLFYIANVFRYDEPQ----FGRYREFT 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG----------DL 206
                              ++       +  +G+K    +  +  I            D 
Sbjct: 124 QAGVEILGADGLNYD---VELIEILEEFYDSIGIKERMYKVNNVAIFRELAKRARLNEDE 180

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSE-------NTDFDDIISLNSIVEQWTAPYAAT 259
                   D G      +       +               DI ++ +++E +       
Sbjct: 181 IERMFHFLDKGRFNDVINIFKEKGAVKEAQVIEYLYRERQRDITAIINMLEGYN--EYKE 238

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF--------KGADGKDHY 311
              H E L   +   K + A+ I V   F  G  Y   +                G+   
Sbjct: 239 IQKHVETLMRYIDMGKAIGAK-IYVDPAFARGIAYYTGIIFEVMVPNMSISIAGGGRYDN 297

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
           +     G        A+             +    +  +L+ + ++D         +   
Sbjct: 298 LTTVYGGEELSSTGFAIGVERTFLALRNNIEIDLGYPKTLVLLLSNDIEGFTKMYNVVKM 357

Query: 372 LSKVGCDVFWD--DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           L + G  + ++  +  +++      A   GF   +IVG K +  + V I+      +E++
Sbjct: 358 LRRQGISIQFEVLESAQRLSRWLEYASKQGFNYVIIVGRKEMEKNVVVIRDMKKWTQEEV 417

Query: 430 SLEEVINYASHR 441
            L+ +  +   +
Sbjct: 418 PLDMLREFLVKK 429


>gi|187478833|ref|YP_786857.1| histidyl-tRNA synthetase [Bordetella avium 197N]
 gi|123752254|sp|Q2KY92|SYH_BORA1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|115423419|emb|CAJ49953.1| histidyl-tRNA synthetase [Bordetella avium 197N]
          Length = 428

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 55/414 (13%), Positives = 116/414 (28%), Gaps = 33/414 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKA-MIY 106
            +    I+R      G   +  P L+   L+    G   D   KEM    D  +   +  
Sbjct: 25  WERFEEIVRAWLQGYGYRNVRTPILEQTRLFTRGIGEVTDIVEKEMYTFTDALNGESLTM 84

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +      H   Y   P   Y I   FR E   R    +  +  ++        
Sbjct: 85  RPEMTAGVVRAAIEHNMLYER-PHRVYSIGPVFRHERPQRGRYRQFHQIDVEALGFAGPD 143

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA-----DTGETQV 221
            +           + L +       +   +            E++        + G+ ++
Sbjct: 144 IDAELIVMLGRLWNTLGLADIRLELNSLGQPAERAAHRAALIEYLEKHVDILDEDGKRRL 203

Query: 222 FCSK-DFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           + +    +D   P+     +    L   + E   A +       ++         + V  
Sbjct: 204 YTNPLRVLDTKNPALQEMANAAPRLFDFLGEASRAHFDGVCQRLDDAGIGYSLNPRLVRG 263

Query: 280 RGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  +F       G++ ++     + G              + IG  R    +++  
Sbjct: 264 LDYYNLTVFEWVTDRLGSQGTVCGGGRYDGLIELLGGKPAPAVGFAIGVER----LLDLW 319

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
               G   P     + +         +  +    ++   L   G  V          SQF
Sbjct: 320 EQSAGQQTPPECEVYVVHQG------EGAQRLAARVGEDLRDAGLSVIVHAGAASFKSQF 373

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIREDMSLEEVINYASHR 441
             AD  G  + VI+G   V+     +K+        G ++ ++L  + +    +
Sbjct: 374 KRADASGARVAVILGDDEVATKTASVKYLRADAAGEGAQDKVALATLASVLKSK 427


>gi|260893520|ref|YP_003239617.1| histidyl-tRNA synthetase [Ammonifex degensii KC4]
 gi|260865661|gb|ACX52767.1| histidyl-tRNA synthetase [Ammonifex degensii KC4]
          Length = 429

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 122/418 (29%), Gaps = 42/418 (10%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  IIRE        E+  P  + A L+        D   KEM    DR  + +   
Sbjct: 23  WHYLEDIIRELAELYRFREIRTPIFEMALLFQRGVGEATDIVVKEMYIFKDRGGRELALR 82

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   +  H    R  P   Y +   FR + RP+ G  R  +F    A  F    
Sbjct: 83  PEGTAPVARAYVEHGLHTRPQPLKLYYVGPMFRHD-RPQMGRNR--QFHQFGAEIFGAPG 139

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS------HEFIVLADTGETQV 221
             +      +   +L    R G+K   +   S               E++    +     
Sbjct: 140 PAADAEVIFLLAEFL---RRAGVKDWELELNSVGCPVCRPQLVAALEEYLGKHASSLCPD 196

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENK 275
            C +     P+   +   D    +            +  + H   + + L          
Sbjct: 197 -CRQRLERNPLRVLDCKEDSCRQVVQQAPTPLDYLCSRCESHFRGVQEELCSLGVPFRLN 255

Query: 276 RVSARGIEV--GHIFY-----FGTKYSLPM--SATFKGADGKDHYVQMGSYGIGAMRVVA 326
               RG++   G  F       G + +L       +   +          + +G  RV+ 
Sbjct: 256 PRLVRGLDYYTGTAFEVLSPRLGAQNALGGGGRYDYLVEECGGPSTPGVGFAVGLERVLL 315

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD--- 383
           A+ +                     + I A D+  R         L   G     D    
Sbjct: 316 ALEKQED-------SPLPKEEVRRGVFIAAADEEGRKRQAYWLRLLRSAGLPADRDYASG 368

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            G +   Q   AD       +I+G++ +    V ++   +G + D+   EVI +   +
Sbjct: 369 RGLRA--QLKQADRHRARWALILGAEELGRGMVRLRDLESGEQVDLPETEVIAWLRQK 424


>gi|328956051|ref|YP_004373384.1| histidyl-tRNA synthetase [Coriobacterium glomerans PW2]
 gi|328456375|gb|AEB07569.1| histidyl-tRNA synthetase [Coriobacterium glomerans PW2]
          Length = 438

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 89/304 (29%), Gaps = 13/304 (4%)

Query: 151 RSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGL----KSIPMRAESGPIGGD 205
           R R+F              +   S   +   Y RI   +       +    A   P   +
Sbjct: 137 RLRQFHQIGIEWLGAPDAAADAESIVMLMEFYRRIGFDMNRLRLSINSMGDARCRPAYRE 196

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
              +FI      E    C +     P+ + +   D    +                 H++
Sbjct: 197 KVRDFIARH-ADEMCDECRERAQLNPLRAFDCKNDRCSKIMRSAPLMIDNLCEECRAHHD 255

Query: 266 KLFDSLPE------NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           ++   L              RG++      F    +L  +    G  G+   +     G 
Sbjct: 256 QVKRYLDAAGVSYLEDPTLVRGLDYYTRTVF-EVEALDAAVGSIGGGGRYDGLVELEGGK 314

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
               V  AV               +       + +       R+    I  +L   G   
Sbjct: 315 PTPGVGFAVGFERIMLALEAQGTRLGKDAPPCVYVANAGADLRERVFDIALQLRAAGVRT 374

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             D  G  +  QF  AD L   L +++G++ ++   V ++  ++     ++L+E++    
Sbjct: 375 EADYQGRSLKGQFKQADRLKAALIIVIGAEELAAGAVRVRDMVSHEERLVALDEILEDVR 434

Query: 440 HRFS 443
            R S
Sbjct: 435 SRLS 438


>gi|298486024|ref|ZP_07004098.1| Histidyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298159501|gb|EFI00548.1| Histidyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330869576|gb|EGH04285.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330985015|gb|EGH83118.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 429

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 62/426 (14%), Positives = 131/426 (30%), Gaps = 34/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP       +    +    +  G  ++ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRHFEGTVSRLLDNYGYRQIRMPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN  ++   P            H  +        + I   FR E   +    R R+F
Sbjct: 70  FADRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQF 126

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---GPIGGDLSHEFI 211
                  F+L  P+         +  +  +  R  +K       +        D   EF+
Sbjct: 127 HQIGVEVFNLDGPDIDAELIVMTWRLWGMLGIRNAVKLELNSLGTSEARARYRDALVEFL 186

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE------ 265
             A   +      +     P+   +T   +  ++     +        S VH E      
Sbjct: 187 -SARLDQLDEDSQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRVHFEGLKARL 245

Query: 266 -------KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                   +   L       ++ +        G + ++     + G   +         G
Sbjct: 246 DAAGIPYVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGLVEQMGGKPTT--G 303

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G    +  ++        +    +           +A +       EK+  +L  +   
Sbjct: 304 VGFAMGIERLVLLLETLGQVPEEIARQVDVYLCAFGEAAELAALALTEKVRDQLPSLRLQ 363

Query: 379 VFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEV 434
           V         G   SQF  AD  G    +I+G + ++   + +K  R  G +++++ + +
Sbjct: 364 V-----NAGAGSFKSQFKKADKSGALYALILGEEELAAKVIGVKPLRGQGEQQNIAWDAL 418

Query: 435 INYASH 440
             + + 
Sbjct: 419 SEHLAS 424


>gi|71735921|ref|YP_273579.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|83305874|sp|Q48LZ3|SYH_PSE14 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|71556474|gb|AAZ35685.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|330874709|gb|EGH08858.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 429

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 62/426 (14%), Positives = 131/426 (30%), Gaps = 34/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP       +    +    +  G  ++ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRHFEGTVSRLLDNYGYRQIRMPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN  ++   P            H  +        + I   FR E   +    R R+F
Sbjct: 70  FADRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQF 126

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---GPIGGDLSHEFI 211
                  F+L  P+         +  +  +  R  +K       +        D   EF+
Sbjct: 127 HQIGVEVFNLDGPDIDAELIVMTWRLWGMLGIRNAVKLELNSLGTSEARARYRDALVEFL 186

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE------ 265
             A   +      +     P+   +T   +  ++     +        S VH E      
Sbjct: 187 -SARLDQLDEDNQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRVHFEGLKARL 245

Query: 266 -------KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                   +   L       ++ +        G + ++     + G   +         G
Sbjct: 246 DAAGIPYVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGLVEQMGGKPTT--G 303

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G    +  ++        +    +           +A +       EK+  +L  +   
Sbjct: 304 VGFAMGIERLVLLLETLGQVPEEIARQVDVYLCAFGEAAELAALALTEKVRDQLPSLRLQ 363

Query: 379 VFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEV 434
           V         G   SQF  AD  G    +I+G + ++   + +K  R  G +++++ + +
Sbjct: 364 V-----NAGAGSFKSQFKKADKSGALYALILGEEELAAKVIGVKPLRGQGEQQNIAWDAL 418

Query: 435 INYASH 440
             + + 
Sbjct: 419 SEHLAS 424


>gi|22538242|ref|NP_689093.1| histidyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|25012099|ref|NP_736494.1| histidyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|76798538|ref|ZP_00780771.1| histidyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|54039672|sp|P67486|SYH_STRA5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|54042035|sp|P67485|SYH_STRA3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|22535155|gb|AAN00966.1|AE014287_6 histidyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|24413643|emb|CAD47720.1| histidyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|76586102|gb|EAO62627.1| histidyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
          Length = 426

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 64/408 (15%), Positives = 112/408 (27%), Gaps = 19/408 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  +IR    +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVENVIRNLFKQYHYDEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P   Y I   FR E        R REF       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPTKMYYIGSMFRYERPQAG---RLREFHQVGVECFGS 136

Query: 165 LTPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             P     +              +     + LG            I         +  D+
Sbjct: 137 NNPATDVETIAMGHHLFEDLGIKNVKLHLNSLGNPESRQAYRQALIDYLTPIREQLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D   P +    ++  S+ + + E   A + A   + +      + +  
Sbjct: 197 QRRLNENPLRVLDSKEPEDKLAVENAPSILDYLDESSQAHFDAVCHMLDALNIPYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+           A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEIEDNELT--ICAGGRYDGLVSYFGGPETPAFGFGLGLERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  S+       + I         A   +   +   G  V  D +G +I +QF  A
Sbjct: 315 ILDKQGISLPIENTIDLYIAVLGSEANLAALDLAQSIRHQGFKVERDYLGRKIKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D     + + +GS  V   +V +K+  T     +S E +    S    
Sbjct: 375 DTFNAKVIMTLGSSEVDSKEVGLKNNQTRQEVKVSFENIKTDFSSVLK 422


>gi|291239384|ref|XP_002739603.1| PREDICTED: glycyl-tRNA synthetase-like [Saccoglossus kowalevskii]
          Length = 683

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/281 (10%), Positives = 77/281 (27%), Gaps = 21/281 (7%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     +         P+ +E    +
Sbjct: 378 FRQHLDNEMAHYACDCWDAECKTSYGWVECVGCADRSCYDLKQHTKATKVPLVAEKKLPE 437

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                   V+   +          + + + L          +E       G         
Sbjct: 438 PKTINVVEVQPQKSIIGKEFKREAKAIMEFLLSFNECDVEELESALKEK-GEMMYKIDGK 496

Query: 301 TFKGADGKDH-------------YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           ++       +                +     G  R++ +++E +   +           
Sbjct: 497 SYTIKPNMVNINRCQKKVHVEEITPSVIEPSFGIGRIMYSILEHNFACREGDDQRGYFTL 556

Query: 348 KISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
              +  +K      +++   +   +++ + LSK+G     DD    IG ++A  D +  P
Sbjct: 557 PAVISPVKCSVLPLSNNDQFKPLVKQLASNLSKLGISHKVDDSSGSIGRRYARTDEIAIP 616

Query: 402 LQVIVGSKFVSDS-KVEIKHRLTGIREDMSLEEVINYASHR 441
             + V    + +     ++ R +  +    L E+    S  
Sbjct: 617 FGITVDFDSLQEPYTATLRERDSMQQIRAPLSELPGIVSDL 657



 Score = 42.0 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 2/78 (2%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           G++ + P+G     N+  + R         +E+    L    +   SG  + +   M++ 
Sbjct: 95  GLFDFGPVGCAMKTNILNLWRNHFIIEESMLEVDCSMLTPEAVLKASGHVERFSDFMVKD 154

Query: 97  ADRNDKAMIYGPTHEEVM 114
               +         E  M
Sbjct: 155 LKTGEC-FRADHLLEAHM 171


>gi|294883812|ref|XP_002771081.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239874299|gb|EER02897.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 142

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                  + C ++   L   G     DD   ++ G +F   DL G PL + +GS+ V  +
Sbjct: 61  MEMDAIENECRELRDILLNDGARCVLDDDRKKRPGFKFTKWDLQGVPLSIRIGSREVETN 120

Query: 415 KVEIKHRLTGIRED 428
            V + +R TG + +
Sbjct: 121 TVTLAYRHTGEKVN 134


>gi|319941511|ref|ZP_08015838.1| histidyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
 gi|319804985|gb|EFW01824.1| histidyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
          Length = 445

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 56/424 (13%), Positives = 109/424 (25%), Gaps = 24/424 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        V     +  +  G  E+  P L++  ++    G   D   KEM  
Sbjct: 24  GMNDMLPQDAPIWQYVQKTCVDVLSSYGYQEIRTPILENTRVFTRGVGEVTDIVEKEMYS 83

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +              +            +     FR E   R    R R+F
Sbjct: 84  FTDSMNGDQLTLRPECTSAVVRAVNEHNLLYGTTQRLWYCGPMFRHERPQRG---RYRQF 140

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFV---------SYLRIFHRLGLKSIPMRAESGPIGGDL 206
               A +  +           M                 + LG +    +     I    
Sbjct: 141 HQLGAEALGMAGPDIDAEIIMMLARMWKALGVGPVKLEMNTLGAQEERQKHREALIAYFE 200

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI-ISLNSIVEQWTAPYAATSDVHNE 265
           +H+  +  D            +D   P      D     L+ + E+  A  +   ++ + 
Sbjct: 201 AHKDQLDEDALRRLYTNPLRILDTKNPDMQGLVDAAPKLLDYLGEESRAFLSRLEELVSS 260

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
              +     + V         +F + T     + A      G  +   +   G      V
Sbjct: 261 AGIEYSINPRLVRGLDYYNHTVFEWITD---KLGAQGTICGGGRYDPLVEMLGGRPAPGV 317

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
              +      + +     V     + + +  H    +     +   +   G  V      
Sbjct: 318 GFAMGMERVIELMREVGQVPKASQTDVYVLHHGGESQAKAMLLAETMRDRGIRVVTHPGE 377

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT------GIREDMSLEEVINYAS 439
             I SQ   AD  G    V      ++   V IK            +  ++  E  +  +
Sbjct: 378 ASIKSQMKKADASGAEFAVFATEDELAQGTVGIKALRAHEHAPFAEQTLVATAEAADKVA 437

Query: 440 HRFS 443
              +
Sbjct: 438 EALA 441


>gi|229046982|ref|ZP_04192608.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH676]
 gi|229110740|ref|ZP_04240303.1| Histidyl-tRNA synthetase 1 [Bacillus cereus Rock1-15]
 gi|228672619|gb|EEL27900.1| Histidyl-tRNA synthetase 1 [Bacillus cereus Rock1-15]
 gi|228724340|gb|EEL75671.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH676]
          Length = 425

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 69/427 (16%), Positives = 128/427 (29%), Gaps = 41/427 (9%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRELALRYDLTIPFAKVVA--MNPNLRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++       F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEAELMAMAFELFRTLNLEITIQYNNRKLLNGILQAINIPTELTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT    +  ++    E +  P  A      
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADFKEAFNNPLVADGVNEL 245

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           ++L   L       A GI    IF       L M                 S G G  R 
Sbjct: 246 QQLQQYL------IALGINENTIFNPFLARGLTMYTGTVYEIFLKDRSITSSIGSGG-RY 298

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARL 372
              +     D              +    +   + +   A            C +I  +L
Sbjct: 299 DNIIGAFRGDNMNYPTVGISFGLDVIYTALSQKETISSTADLFIIPLGTELQCLQIAQQL 358

Query: 373 SKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
                  V  +  G ++      A+    P  +I+G   +S + V +++   G    + +
Sbjct: 359 RSTTSLKVELELAGRKLKRALNYANKENIPYVLIIGEDELSTNTVVLRNMKEGSEVKVPI 418

Query: 432 EEVINYA 438
             + NY 
Sbjct: 419 SSLSNYL 425


>gi|172040627|ref|YP_001800341.1| histidyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109]
 gi|229558650|sp|B1VDK9|SYH_CORU7 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|171851931|emb|CAQ04907.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 427

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 55/424 (12%), Positives = 118/424 (27%), Gaps = 31/424 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           GI  ++P        V     +  +  G   + +P  +   L+        D   KEM  
Sbjct: 17  GIPDYVPPQSSEFLAVRTAFLDAAHNAGYEHIELPVFEDTSLFARGVGESTDVVSKEMYT 76

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR  +++   P     +      H      LP         FR E        + ++ 
Sbjct: 77  FADRGGRSVTLRPEGTAGVMRAVIQHNLDRGQLPAKLAYHGPFFRYERPQAGRFRQLQQV 136

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
            ++        P             +  I        +    +S   P       EF+  
Sbjct: 137 GVEA--IGVDDPALDAEVIALADRCFRSIGLDGFRLELTSLGDSTDRPAYRAKLQEFLAT 194

Query: 214 ADTGE----TQVFCSKDFMDFPIPSENTDFDDIISLNSIV-----EQWTAPYAATSDVHN 264
               E             +D   P       D   +   +     E +        D+  
Sbjct: 195 LPLDEETQRRAELNPLRVLDDKRPQMQEMLADAPLMKDHLSDSSREHFETVTGLLEDMGV 254

Query: 265 EKLFDS-LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK--DHYVQMGSYGIGA 321
           E   +  +        +          G +  +     + G   +     +    +G+G 
Sbjct: 255 EYTINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQDLSGIGFGLGV 314

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF- 380
            R + A+              +    ++ +  I   D   R     +   L   G     
Sbjct: 315 DRALLALEAEGKT--------ASTGRRVDVFGIPMGDAAKRHMA-ALINELRAAGVAADM 365

Query: 381 -WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            + + G + G+    A+     L V++G + +    V +K    G + D+++ +++ +  
Sbjct: 366 AYGNRGLK-GAM-KAANRAHAQLAVVIGDQELEAGTVAVKDLQLGEQHDVAVADLVTHIR 423

Query: 440 HRFS 443
            + +
Sbjct: 424 RQLA 427


>gi|77414026|ref|ZP_00790197.1| histidyl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|77159908|gb|EAO71048.1| histidyl-tRNA synthetase [Streptococcus agalactiae 515]
          Length = 426

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 64/408 (15%), Positives = 112/408 (27%), Gaps = 19/408 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  +IR    +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVENVIRNLFKQYHYDEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFHDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P   Y I   FR E        R REF       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPTKMYYIGSMFRYERPQAG---RLREFHQVGVECFGS 136

Query: 165 LTPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             P     +              +     + LG            I         +  D+
Sbjct: 137 NNPATDVETIAMGHHLFEDLGIKNVKLHLNSLGNPESRQAYRQALIDYLTPIREQLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D   P +    ++  S+ + + E   A + A   + +      + +  
Sbjct: 197 QRRLNENPLRVLDSKEPEDKLAVENAPSILDYLDESSQAHFDAVCHMLDALNIPYIIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+           A G+   +     G         +       
Sbjct: 257 MVRGLDYYSHTIFEFITEIEDNELT--ICAGGRYDGLVSYFGGPETPAFGFGLGLERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                  S+       + I         A   +   +   G  V  D +G +I +QF  A
Sbjct: 315 ILDKQGISLPIENTIDLYIAVLGSEANLAALDLAQSIRHQGFKVERDYLGRKIKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D     + + +GS  V   +V +K+  T     +S E +    S    
Sbjct: 375 DTFNAKVIMTLGSSEVDSKEVGLKNNQTRQEVKVSFENIKTDFSSVLK 422


>gi|46205115|ref|ZP_00049003.2| COG0442: Prolyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 260

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 3/132 (2%)

Query: 258 ATSDVHNEKLFDSLPEN--KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            T +    +  D  P+       ARGIE+GHIF  G KY+  +  T    +GK   V MG
Sbjct: 127 GTVEAAEVRAGDLAPDGSGPLELARGIEIGHIFALGRKYAQALGLTVLDENGKQVVVTMG 186

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           SYGIG  RV+AA+ E++HD  G+ W  +        +     D    +  E++   LS  
Sbjct: 187 SYGIGVTRVLAALAEANHDDAGLAW-PAHVAPAQVHVVATGKDASVFEEAERLATELSGR 245

Query: 376 GCDVFWDDMGEQ 387
           G +V +DD  + 
Sbjct: 246 GVEVIYDDRSKS 257


>gi|86157935|ref|YP_464720.1| histidyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774446|gb|ABC81283.1| histidyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 426

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/418 (12%), Positives = 114/418 (27%), Gaps = 28/418 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP        + ++ R+     G  E+  P ++ A L+        D   KEM  
Sbjct: 20  GMNDVLPADVARWHEMESVARDVFALYGYREVRTPAVEHAALFARGVGEATDIVNKEMYV 79

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+ ++ +   P         F     ++   P  ++ +   FR E   +    R R+F
Sbjct: 80  FEDKGEELLALRPEGTAGTVRAFI-EHGAFVEGPQKWFYMGPMFRRERPQKG---RYRQF 135

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSY--------LRIFHRLGLKSIPM------RAESGP 201
                 +F +           +   Y            + +G            +A    
Sbjct: 136 HQIGCEAFGVAEPYLDAEQIALLADYFARLGVTAELKLNSVGDAQCRPAYLADLKAYLVS 195

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
             G L  +     +    +V   K     P+  +     + +                + 
Sbjct: 196 NQGALCADCKDRIERNPLRVLDCKVESCQPVLEKAPRLLERLCEPCRTHFDQVKAGLDAL 255

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               ++   L        R          G++ ++     +               G   
Sbjct: 256 GVAYRVEPRLVRGLDYYVRTAYEFTSDALGSQSAVAGGGRYDRLVETLGGPPTPGIGFAL 315

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                ++I             +V              ++             + G     
Sbjct: 316 GEERLSMILEKVGRAAPERRPAVFFVSADATGALEALRLAAAL--------RRAGIACEL 367

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           D  G ++ +QF  A+ +G    V++G   V+  + ++K   T     ++L ++    +
Sbjct: 368 DPRGGKMKAQFKQAERVGARWAVVLGGNEVATGQAKLKDLQTREETPIALSDLAARVA 425


>gi|42560881|ref|NP_975332.1| histidyl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|54039667|sp|P62372|SYH_MYCMS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|42492378|emb|CAE76974.1| histidine-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301320579|gb|ADK69222.1| histidine--tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 414

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 61/411 (14%), Positives = 129/411 (31%), Gaps = 30/411 (7%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAM 104
            K  + V   ++E  ++    E+  P  +S +L++ S     D   KEM    D+ ++++
Sbjct: 16  AKLWNKVETKLKEILDQFNYSEIRTPMFESKELFIRSIGSTTDIVSKEMYEFVDKKNRSL 75

Query: 105 IYGPTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           +  P     +   +  + + +  NLP   Y I   FR E        R R+F       F
Sbjct: 76  VLKPEGTASVVRAVIENKLYAEENLPLKVYYISPMFRYERPQNG---RYRQFHQLGIEVF 132

Query: 164 DLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
                       N       +      +K       +G    D   E        +    
Sbjct: 133 GSDSIQQDYEVLNIATKIINQFKLNKNIKIYTNFLITGKNREDYILELKKYLSDFKLCND 192

Query: 223 CSKDFMDFPIPSENTDFDDI------ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           C+      P+   +   DD          + + ++    Y  T ++  +     + ++K 
Sbjct: 193 CNTRLEKNPLRVLDCKIDDKQFKNVPSMQDFLTKEQKTRYDQTLELFKKTNISVIHDDKL 252

Query: 277 VSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           V       G IF         + ++     +     +   + + + G G        I  
Sbjct: 253 VRGLDYYTGFIFEIKYLNNNNEQTIIAGGRYNNLVNEIGNINLAACGFGMGLERFINIIK 312

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG---EQI 388
             +   +    ++  + I +      D +  +  ++I      +G      D       +
Sbjct: 313 EQNSSLVNQKTNIDLYTICI------DDLAIELNQQILDLTRSIGLKA---DSNYYHLSL 363

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            S    AD L     +I+GS     ++  IK ++   +   +L + I    
Sbjct: 364 KSALKKADKLNPKYVIILGSNEAKTNEFIIKDQINKTQIKTTLTKFIKDLK 414


>gi|328957464|ref|YP_004374850.1| histidine--tRNA ligase [Carnobacterium sp. 17-4]
 gi|328673788|gb|AEB29834.1| histidine--tRNA ligase [Carnobacterium sp. 17-4]
          Length = 441

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 66/422 (15%), Positives = 112/422 (26%), Gaps = 21/422 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAI--EMSVPTLQSADLWVES--GRYDSYGKEM 93
           G    LP   +    V  I+            E+  P  +S DL+        D   KEM
Sbjct: 8   GTADLLPEDSRKWQYVEEIL--NMVLADYQFGEIRTPIFESYDLFSRGVGETSDIVSKEM 65

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMR 151
               D+ ++ M   P     +   F  +       N P+  Y     FR E        R
Sbjct: 66  YDFFDKGERHMSLRPEGTAPVVRAFVENKLFGPEHNKPYKVYYKGPMFRYERPQGG---R 122

Query: 152 SREFLMKDAYSF-DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--------I 202
            R+F       F    P     S       +  +        I    +S          I
Sbjct: 123 MRQFHQLGVEVFGSTNPATDVESMALAMALFEELGLEKLTLVINSLGDSESRVAYREALI 182

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSD 261
                H   + AD+           +D     +     +  S+ + + E     +    +
Sbjct: 183 AYLKPHFEELSADSQTRLHKNPLRVLDSKDKKDKEIVKNAPSILDYLSEDSAKHFETVKE 242

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
           +        + ++  V         IF   +      + T   A G+   +     G   
Sbjct: 243 MLTALDIPFVIDSNMVRGLDYYTHTIFEVMSDAPGFGAITTICAGGRYDGLVEEVGGPAT 302

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                A+               +       + +    +       KI       G     
Sbjct: 303 PGFGFALGLERLMMTLEAEEIDIPDTHEVDVYVIGLGEATNLESLKIVQAARGAGLSAER 362

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           D M  +I  QF  A  L   + + +G   +   +V  K   TG    + L EV       
Sbjct: 363 DYMNRKIKGQFKTASKLNAKVVITLGDAELEQKEVNFKVMKTGNESKVPLTEVYKDFEKL 422

Query: 442 FS 443
           F+
Sbjct: 423 FN 424


>gi|145592022|ref|YP_001154024.1| glycyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
 gi|145283790|gb|ABP51372.1| glycyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
          Length = 585

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 91/284 (32%), Gaps = 27/284 (9%)

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                 + +                    G         SG +       ++        
Sbjct: 305 HERAHYSAKSYDQMVLTER---FGWVEVSGHAYRTDYDLSGHMRHSGREMYLERRLPAPK 361

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           +V   + + + P        D I  +   +++  A  A T             E K+   
Sbjct: 362 EVEVVRIYPN-PNAIREKYGDRIGEVIKAIKENEAYVAKT-----------FGEGKQEVT 409

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
            G       Y  T+  + +    +  D +     +     G  R++ AV+E +   +G  
Sbjct: 410 VG------EYIVTRDMVFIKTEKRKTDLEKFIPHVVEPSFGLDRIMYAVLEYAVAEEGGR 463

Query: 340 WPDSVA----PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
               +     P  + ++ I        +    +   L+  G   ++DD G  IGS++A  
Sbjct: 464 VYLRLPADVAPINVCILPIVKRQDYV-EIGRSLRKELATEGFLAWYDDEG-TIGSRYAAC 521

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           D +G PL V +  +  +D  V I+ R T  +  + L +V  + +
Sbjct: 522 DEIGVPLAVTIDERTPTDGTVTIRDRDTRKQVRIGLRDVAKFLA 565



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 11/112 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREE-----QNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
           G Y + PLG +   N+    R       Q+    IE+  P +    ++  SG  D +   
Sbjct: 29  GFYDYGPLGVQLRRNIVEKWRRTFVLPFQDLI--IEVETPIIMPEPVFKASGHLDHFTDY 86

Query: 93  MLRLADRNDKAMIYGPTHEEVMT---DIFRSHIKSYRNLPFTFYQIQLKFRD 141
           ++       +        EE +        +   S   L     + ++   +
Sbjct: 87  VVGCTKC-GRKYRADHLVEEELAKRGLKISTEGLSAAELERLIVEHRIVCPN 137


>gi|82703491|ref|YP_413057.1| histidyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
 gi|82411556|gb|ABB75665.1| histidyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
          Length = 419

 Score = 77.5 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 49/406 (12%), Positives = 100/406 (24%), Gaps = 27/406 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYG 107
            +     +R+     G   + +P ++  DL+V S G   D   KEM    D  +   +  
Sbjct: 23  WEFFEQSVRDWMAAYGYRNIRMPIVEQTDLFVRSIGAVTDIVEKEMYTFVDHLNGESLTL 82

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
                              + P   Y     FR E   +    +  +   +         
Sbjct: 83  RPEGTASCVRAVLEHNLLYSGPQRLYYSGAMFRHERPQKGRYRQFHQVGAEALGYGGPDI 142

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
           +             L +            AES  +      +++        +    +  
Sbjct: 143 DAELIIMGADLWKRLGVSGVRLEIGTLGSAESRSVHRTRLIDYLQRHLCKLDEDASRRLH 202

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-------------KLFDSLPEN 274
            + P+   ++    +  +     +        S +H E             ++   L   
Sbjct: 203 SN-PLRILDSKNAGMREIIEGAPRLLDDLDEDSLIHFERLQQILREQGVDFEINPRLVRG 261

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                R +        G + ++     + G    +      +   G    V  V+    D
Sbjct: 262 LDYYNRTVFEWVTDKLGAQGTVCAGGRYDGLV--EQVGGKATPACGFALGVERVLALVMD 319

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                 P          + +            K    L   G             +Q   
Sbjct: 320 SIIPQAPP--------DVYVVHKGDAAAGFAWKTARHLRDRGFQAILHCGEGSFKAQMRK 371

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYAS 439
           AD  G    +I+G       ++ IK  R    +  + L E  +   
Sbjct: 372 ADASGARFAIIIGDDEAQAGEISIKPLREAAEQVRVGLAEAADLLK 417


>gi|300781071|ref|ZP_07090925.1| histidine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
 gi|300532778|gb|EFK53839.1| histidine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
          Length = 441

 Score = 77.5 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 60/426 (14%), Positives = 123/426 (28%), Gaps = 28/426 (6%)

Query: 32  IHQHSK--GIYSWLPLGQKALDNV-NAIIREEQNRTGAIEMSVPTLQSADLWVES--GRY 86
               S   G+  ++P        V +  +R+ Q   G   + +P  +   L+        
Sbjct: 13  FQPLSAPKGVPDYVPPTSATFHAVRSEFVRQAQL-AGYQHIELPIFEDTTLFARGVGEST 71

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D   KEM   ADR D+++   P     +      H      LP         FR E RP+
Sbjct: 72  DVVSKEMYTFADRGDRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLNYYGPFFRYE-RPQ 130

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGG 204
            G  R  +  +         P             Y  +        +    +S   P   
Sbjct: 131 AGRYRQLQ-QVGVEAIGVDDPLLDVEVIALADRCYRAVGLTGYRLELTSLGDSTCRPAYR 189

Query: 205 DLSHEFIVLADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
               +F++     E      Q+   +   D     +    D  + L+ + ++  A +   
Sbjct: 190 QKLQDFLLDLPLDEETRHRAQINPLRVLDDKRPEVQEMTADAPLMLDHLSDECRAHFETV 249

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +   ++         + V          F F        S    G        Q+G   +
Sbjct: 250 TGSLDDLGIAYTINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQIGGQDL 309

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
             +     V  +    +           ++    +   +Q  +     I   L   G   
Sbjct: 310 SGIGFGLGVDRTVLALEAEGVQIEGVDQRVVAYGVGIGEQAQKRMALLI-DELRANGISA 368

Query: 380 FWDDMGEQIGSQ-----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE-- 432
                    G +        AD  G    +++G + +   ++ +K+     ++ ++L+  
Sbjct: 369 -----DMSYGGRGLKGAMKGADRSGAGAALVLGERELEAGEITVKNLEDQTQKTVALDVH 423

Query: 433 EVINYA 438
           E+I+  
Sbjct: 424 EIIDAI 429


>gi|251783488|ref|YP_002997793.1| histidyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242392120|dbj|BAH82579.1| histidyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 426

 Score = 77.5 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 62/422 (14%), Positives = 119/422 (28%), Gaps = 32/422 (7%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++ R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 13  LPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 73  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 129

Query: 159 DAYSFDL-TPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG            I       
Sbjct: 130 GVECFGAANPATDVETIAMAYHLFEKLGIKDVTLHLNSLGSPESRSAYRQALIDYLTPMR 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    +   S+ + + E+  A + A   +      
Sbjct: 190 DQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVKAMLEALNI 249

Query: 269 DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +   V         IF F     G+  ++     +    G     +   +G G   
Sbjct: 250 PYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               +I         I  +      +      +          ++   + + G     D 
Sbjct: 310 ERLLMIIEKQGLALPIETEMDVYLAVLGDGANSK-------ALELVQAIRRQGFTAERDY 362

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI---NYASH 440
           +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+++      S 
Sbjct: 363 LGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQEVEVSFEDMMTNFENISE 422

Query: 441 RF 442
           + 
Sbjct: 423 QL 424


>gi|296273497|ref|YP_003656128.1| histidyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
 gi|296097671|gb|ADG93621.1| histidyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
          Length = 407

 Score = 77.5 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 64/383 (16%), Positives = 114/383 (29%), Gaps = 20/383 (5%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
              G   M  P L+   L+  S     D   KEM +  D+ +  +   P     +   F 
Sbjct: 35  KNYGFTYMETPILEETALFKRSVGESSDIVNKEMYQFIDKGENDVCLRPEGTAGVVRSFV 94

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            +        + +Y     FR E   +    R REF       F +       +   M  
Sbjct: 95  ENKFDRAGGTYKWYYYGPMFRYERPQKG---RLREFHQFGCEVFGIDSVYEDANIIMMLK 151

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG---ETQVFCSKDFMDFPIPSEN 236
             L  F       +       PI      E +V   T    E    C++     PI   +
Sbjct: 152 EILDFFGIDFTLQLNSLGC--PICMPPYKENLVKVLTNIKTELCEDCNRRIETNPIRVLD 209

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL 296
              +   SL     + T       D   EKL + L  +       I+   +      YS 
Sbjct: 210 CKNEKCQSLLINAPKITDNLCEKCDSDFEKLKEIL--DFNNINYVIDSNLVRGL-DYYSQ 266

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAV----IESSHDGKGIIWPDSVAPFKISLI 352
                     G    +  G      +  +       I  +   + ++        K   I
Sbjct: 267 TAFEFTSNEIGAQSAIAGGGRYDRLVEFLGGRATPGIGFAIGIERLLELIKQKDIKEDTI 326

Query: 353 NIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
            + A ++   +   K+   L K        +      G  F +A   G  +  ++G   +
Sbjct: 327 YLGAMNEEALNTITKVA--LKKRKTTKTIIEYAPRSFGKHFKIAQKHGANIVALIGETEL 384

Query: 412 SDSKVEIKHRLTGIREDMSLEEV 434
           ++  + IK+  T   +++ LE+ 
Sbjct: 385 NNGTIYIKNIDTQEEQNLKLEDF 407


>gi|69247936|ref|ZP_00604552.1| Histidyl-tRNA synthetase, class IIa [Enterococcus faecium DO]
 gi|257880300|ref|ZP_05659953.1| histidyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257882155|ref|ZP_05661808.1| histidyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257885347|ref|ZP_05665000.1| histidyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|257890959|ref|ZP_05670612.1| histidyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|257894214|ref|ZP_05673867.1| histidyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|258614752|ref|ZP_05712522.1| histidyl-tRNA synthetase [Enterococcus faecium DO]
 gi|260562396|ref|ZP_05832910.1| histidyl-tRNA synthetase [Enterococcus faecium C68]
 gi|293552796|ref|ZP_06673456.1| histidyl-tRNA synthetase [Enterococcus faecium E1039]
 gi|293560708|ref|ZP_06677187.1| histidyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|293566142|ref|ZP_06678545.1| histidyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|294618767|ref|ZP_06698294.1| histidyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|294622236|ref|ZP_06701296.1| histidyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|314938573|ref|ZP_07845857.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|314940918|ref|ZP_07847824.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|314948061|ref|ZP_07851463.1| histidyl-tRNA synthetase [Enterococcus faecium TX0082]
 gi|314952054|ref|ZP_07855077.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|314991936|ref|ZP_07857391.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|314995194|ref|ZP_07860308.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|68194638|gb|EAN09125.1| Histidyl-tRNA synthetase, class IIa [Enterococcus faecium DO]
 gi|257814528|gb|EEV43286.1| histidyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257817813|gb|EEV45141.1| histidyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257821203|gb|EEV48333.1| histidyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|257827319|gb|EEV53945.1| histidyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|257830593|gb|EEV57200.1| histidyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|260073320|gb|EEW61661.1| histidyl-tRNA synthetase [Enterococcus faecium C68]
 gi|291590068|gb|EFF21860.1| histidyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|291594955|gb|EFF26305.1| histidyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|291598278|gb|EFF29371.1| histidyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|291603043|gb|EFF33235.1| histidyl-tRNA synthetase [Enterococcus faecium E1039]
 gi|291605299|gb|EFF34754.1| histidyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|313590603|gb|EFR69448.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|313593520|gb|EFR72365.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|313595844|gb|EFR74689.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|313600276|gb|EFR79119.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|313642130|gb|EFS06710.1| histidyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|313645477|gb|EFS10057.1| histidyl-tRNA synthetase [Enterococcus faecium TX0082]
          Length = 430

 Score = 77.5 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 52/402 (12%), Positives = 114/402 (28%), Gaps = 11/402 (2%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         EM  P  +  ++   S     D   KEM    D+ ++ +   
Sbjct: 20  WQFVEETARLLFRDYQYNEMRTPIFEHYEVISRSVGDTTDIVSKEMYDFYDKGERHVTLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  H         PF  + +   FR E   +  + +  +  ++   S + 
Sbjct: 80  PEGTAPIVRSFVEHKLFGPEYAKPFKTFYMGPMFRYERPQKGRLRQFHQIGVEAFGSENP 139

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG--ETQVFC 223
             +         F   L I     + +     E+         ++++  ++   E     
Sbjct: 140 ATDVESMVMALDFFKQLGITQIRLVINSLGDKETRQAYRQALIDYLLPFESELSEDSKRR 199

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-----PENKRVS 278
             +     + S++      ++    +  + +  A         + D+L      ++  V 
Sbjct: 200 LHENPLRVLDSKDKRDQKFVAEAPSILDYLSEPAQKHFDTVVSMLDALAVPYEIDSNMVR 259

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                   IF   +      +     A G+   +     G        A+          
Sbjct: 260 GLDYYTHTIFEIMSDAPKMGAQATICAGGRYDNLVEELGGPSTPGFGFAMGIERLLLTME 319

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                +  F      + A          K+   +   G     D M  +  +QF  AD  
Sbjct: 320 AEEVVIPAFNELDAYVVALGDETNIEALKVVQAIRNFGFSADRDFMNRKAKAQFKTADKA 379

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              L +++G   ++   + +K   +   +   LEE+  +   
Sbjct: 380 NAKLVLVIGEDELASQTINVKAMASRKEKSFPLEEIYEHFDE 421


>gi|331009187|gb|EGH89243.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 429

 Score = 77.5 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 61/426 (14%), Positives = 131/426 (30%), Gaps = 34/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP       +    +    +  G  ++ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRHFEGTVSRLLDNYGYRQIRMPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN  ++   P            H  +        + I   FR E   +    R R+F
Sbjct: 70  FADRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQF 126

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---GPIGGDLSHEFI 211
                  F+L  P+         +  +  +  R  +K       +        D   EF+
Sbjct: 127 HQIGVEVFNLDGPDIDAELIVMTWRLWGMLGIRNAVKLELNSLGTSEARARYRDALVEFL 186

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE------ 265
             A   +      +     P+   +T   +  ++     +        S VH E      
Sbjct: 187 -SARLDQLDEDSQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRVHFEGLKARL 245

Query: 266 -------KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                   +   L       ++ +        G + ++     + G   +         G
Sbjct: 246 DAAGIPYVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGLVEQMGGKPTT--G 303

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G    +  ++        +    +           +A +       E++  +L  +   
Sbjct: 304 VGFAMGIERLVLLLETLGQVPEEIARQVDVYLCAFGEAAELAALALTEQVRDQLPSLRLQ 363

Query: 379 VFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEV 434
           V         G   SQF  AD  G    +I+G + ++   + +K  R  G +++++ + +
Sbjct: 364 V-----NAGAGSFKSQFKKADKSGALYALILGEEELAKKVIGVKPLRGQGEQQNIAWDAL 418

Query: 435 INYASH 440
             + + 
Sbjct: 419 SEHLAS 424


>gi|326335233|ref|ZP_08201428.1| histidine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692504|gb|EGD34448.1| histidine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 455

 Score = 77.5 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 58/454 (12%), Positives = 123/454 (27%), Gaps = 63/454 (13%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRY---- 86
           P G +          + +  IIR+   + G   +  P+ ++ +        E  R     
Sbjct: 7   PKGTRDFSPEEVSKRNYIIQIIRKNFEKFGFQPIETPSFENMETLMGKYGEEGDRLIFKI 66

Query: 87  ------------DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
                       D Y +   +                         H  S    PF  YQ
Sbjct: 67  LNSGDFLRDIPEDIYREHNSQKMTTQISEKALRYDLTVPFARYVVQHQ-SEITFPFKRYQ 125

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL--KS 192
           IQ  +R +   +    R REF   DA          +  + +++ S        G+  K 
Sbjct: 126 IQPVWRADRPQKG---RYREFYQCDADVVGANSLWQEVEFVQLYDSVFAALQLKGITIKI 182

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
              +  SG      + E ++       ++             +     + I+    V   
Sbjct: 183 NHRKILSGFAEVIGTPEKLIDFTVALDKLDKIGKEKVEEEMLQRGISPEAIAKIQPVFSL 242

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSL---------------- 296
              ++       E L  S    + ++        +   G + S                 
Sbjct: 243 QGSFSEKISQLKELLATSQVGREGIADLEFIYETVQQIGLQVSNLELEVTLARGLNYYTG 302

Query: 297 ------PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW-----PDSVA 345
                 P      G+ G        +   G   +    I    D   ++           
Sbjct: 303 AIFEVAPPKEVVLGSIGGGGRYDELTAIFGLKGMSGIGISFGLDRIFLVMEQLALFPETL 362

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
              + ++ +             +  +L + G          ++  Q A AD       ++
Sbjct: 363 THSLDVLCVNFGKSEAL-ISFGLVQQLRQKGYKAELYPEIIKLKKQLAYADSRKAKYVIL 421

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G + +S +   +K+ LTG +    + +++N+  
Sbjct: 422 IGEEELSQNTAVLKNMLTGEQITYPIVDIVNHIK 455


>gi|326428548|gb|EGD74118.1| glycyl-tRNA synthetase [Salpingoeca sp. ATCC 50818]
          Length = 666

 Score = 77.5 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARL 372
            G  R++ A++E S+  +              +  +K      ++        E++   +
Sbjct: 516 FGLGRIIYAILEHSYACREGDEQRQWLSVSPLVAPVKCSLLPLSNKPDFDPLLEELCTMM 575

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           ++ G     D  G  IG ++A  D +G P  V V    + D  V ++ R +  +  M ++
Sbjct: 576 TEEGITFLKDASGTSIGRRYARTDEIGIPFGVTVDFDSLQDRTVTLRDRNSMTQVRMPMD 635

Query: 433 EVINYASHR 441
            V    +  
Sbjct: 636 AVPRTVARL 644



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 25  LMLRTGM------IHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           LM R         I+  + G+Y + P G   ++N+    R         +E+S P +   
Sbjct: 65  LMKRRFFYAPAFEIYGGTAGLYDYGPTGCAIMNNIQQEWRRHFVLEDNLLEISCPAMTPY 124

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKA 103
            +   SG    +   M++     D  
Sbjct: 125 RVLESSGHAKRFADIMVKDMQTGDCH 150


>gi|152995386|ref|YP_001340221.1| histidyl-tRNA synthetase [Marinomonas sp. MWYL1]
 gi|189082300|sp|A6VV07|SYH_MARMS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|150836310|gb|ABR70286.1| histidyl-tRNA synthetase [Marinomonas sp. MWYL1]
          Length = 424

 Score = 77.5 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 58/436 (13%), Positives = 119/436 (27%), Gaps = 36/436 (8%)

Query: 31  MIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRY 86
           M  +     G+   LP        +   + +     G  ++  P +++ DL+        
Sbjct: 1   MARKIQAIRGMNDILPDQSSVWLYLEKTVADVVKSYGYQQIRFPIVENTDLFKRGVGETT 60

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D   KEM    DRN +++   P                +       +     FR E   +
Sbjct: 61  DIVEKEMYTFDDRNGESLTLRPEGTASCVRAADQAGLLFNQ-TQRLWYTGPMFRYERPQK 119

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSK-----------------HSYNKMFVSYLRIFHRLG 189
               R R+F      SF +                               +      R  
Sbjct: 120 G---RYRQFHQIGVESFGMATADIDAELIILSARLWQKLGLLEHVELQLNTIGLASEREA 176

Query: 190 LKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            K+  +   +      L  +      T   ++  SKD     I     + +D I   S  
Sbjct: 177 YKAALVEYLTE-FKDQLDEDSQRRLSTNPLRILDSKDESTQAILKNAPNLEDFIGEESQA 235

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
                     ++     +   L        + +      + G++ ++     + G     
Sbjct: 236 HFDLLQAILKANGIPYVINRRLVRGLDYYGKTVFEWVTTHLGSQATVCAGGRYDG----- 290

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACE 366
              Q+G     A+     +       + +      A F   +  I   D          E
Sbjct: 291 LVEQLGGKSTPAVGFAMGIERLVLLLETLNLIPDAAKFSTDVFVISMGDDAELASFVLAE 350

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++          V     G    +Q   AD       +++G   +     ++K   TG +
Sbjct: 351 RLREE--NSNLVVLRHCGGGNFKNQMKKADRSEARFTIVLGQDEIDKGICQLKDMSTGEQ 408

Query: 427 EDMSLEEVINYASHRF 442
           +  S+++V  Y + + 
Sbjct: 409 QPHSIDDVATYINAKL 424


>gi|213966123|ref|ZP_03394310.1| histidyl-tRNA synthetase [Corynebacterium amycolatum SK46]
 gi|213951221|gb|EEB62616.1| histidyl-tRNA synthetase [Corynebacterium amycolatum SK46]
          Length = 427

 Score = 77.5 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 52/427 (12%), Positives = 125/427 (29%), Gaps = 39/427 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+  ++P   +  + V    +      G   + +P  +   L+        D   KEM  
Sbjct: 18  GVPDYVPPVSREFEAVRNSFQHRARLAGYEHIELPIFEETGLFARGVGESTDVVTKEMYT 77

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR D+++   P     +      H      LP         FR E        R R+ 
Sbjct: 78  FADRGDRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLSYAGPFFRYERPQAG---RYRQL 134

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS---HEFIV 212
                 +  +           +  +  R     G +             +      EF+ 
Sbjct: 135 QQVGVEAIGIDDPALDAEVIALADACFRGIGLEGFRLELTSLGDNTCRSEYRAKLQEFLF 194

Query: 213 LADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
                E       +   +   D     +    D  + L+ + +   + + A + + ++  
Sbjct: 195 DLPLDEETRHRANINPLRVLDDKRPEMQEMLADAPLMLDHLSDSARSHFEAVTGLLDDMR 254

Query: 268 FDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGK--DHYVQMGSYGIG 320
              +   + V          F       G +  +     + G   +     +    +G+G
Sbjct: 255 VPYVINPRMVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQELSGIGFGLG 314

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R + A+              +    ++ +  +   ++       +I  +L + G    
Sbjct: 315 VDRALLAL--------EAESKQASDGRRVDVYGVALGEEAAHAMALQI-NKLRQAGIRA- 364

Query: 381 WDDMGEQIGSQ-----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                   G +        AD  G    +++G   ++  +V++K+  +  +  ++L+ ++
Sbjct: 365 ----DMSYGGRGLKGAMKGADRAGARFALVLGESELAAGEVQLKNLESHEQHAVALDALV 420

Query: 436 NYASHRF 442
                R 
Sbjct: 421 QELQSRI 427


>gi|257877237|ref|ZP_05656890.1| histidyl-tRNA synthetase [Enterococcus casseliflavus EC20]
 gi|257811403|gb|EEV40223.1| histidyl-tRNA synthetase [Enterococcus casseliflavus EC20]
          Length = 432

 Score = 77.5 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/409 (13%), Positives = 111/409 (27%), Gaps = 17/409 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         E+  P  +  ++   S     D   KEM    D+ ++ +   
Sbjct: 20  WQFVEETARLVFRDYQFNEIRTPIFEHFEVIARSVGDTTDIVSKEMYDFYDKGERHVTLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P+  +     FR E   +    R R+F       F  
Sbjct: 80  PEGTAPIARSYVENKLFGPEHTKPYKVFYTGPMFRYERPQKG---RLRQFHQIGVEVFGS 136

Query: 165 LTPEGSKHSYNKMFVSYLR--------IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             P     +       Y +        + + LG K          I     HE  +  D+
Sbjct: 137 ANPATDVETMAMAMDFYRQLGLSQLRLVINSLGDKETRQNYRQALIDYLAPHEAELSEDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +     D  S+ + +     A +   + + +        ++ 
Sbjct: 197 KRRLHENPLRVLDSKDKRDQKFVADAPSILDYLTPDAKAHFETVTSMLDALEIPYEIDSN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF   ++     +     A G+ +++     G        A+       
Sbjct: 257 MVRGLDYYTHTIFEIMSEAPKMGAQATICAGGRYNHLVEELGGPETPGFGFALGIERLLI 316

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +         +    Q       K+   +   G     D M  +  +QF  A
Sbjct: 317 TMEAEEVVIPALNELDAYVVGLGQETNLEALKVVQAIRNFGFSADRDFMDRKAKAQFKSA 376

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           D  G  L + +G   +++  + IK   +   +   L ++       +  
Sbjct: 377 DKQGARLVLTLGETELAEQVINIKSMASREEKQFPLADLYARFDEIYDE 425


>gi|256370704|ref|YP_003108529.1| glycyl-tRNA synthetase [Candidatus Sulcia muelleri SMDSEM]
 gi|256009496|gb|ACU52856.1| glycyl-tRNA synthetase [Candidatus Sulcia muelleri SMDSEM]
          Length = 499

 Score = 77.5 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 64/502 (12%), Positives = 137/502 (27%), Gaps = 73/502 (14%)

Query: 10  ILQENPRDAEIASHKLMLRTGMIHQHS------KGIYSWLPLGQKALDNVNAIIREEQNR 63
           + +++ +   I SH      G I   S      K +Y +   G    +N+     +   +
Sbjct: 1   MEKDDKKLKFIISHAKS--YGFIFPSSEIYDGLKAVYDYGQYGISLKNNIKEYWWKSMTQ 58

Query: 64  T--GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
                + +         +W  SG  D +   +L          +     E +      + 
Sbjct: 59  LHENIVGIESSIFMHNKVWKASGHIDEFNDIILYNEKTKKSYRLDLLIEEFLEKINDYNW 118

Query: 122 I-KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY--------SFDLTPEGSKH 172
             K+   +   F      F+ E +             K                 +   +
Sbjct: 119 FLKNNSGMTIKFPNQLNLFKKEFKKNILSYIENCLNSKKILEIKNFLKKINFFETKNCFN 178

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAES--------------------------------- 199
            Y    +  + I +    K I +R E+                                 
Sbjct: 179 FYKLNLMFIVYIKNIYNEKKIYLRPETAQGSILNFLNVKKTSKIKIPFGIAQIGKVFRNE 238

Query: 200 -------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
                    +      E       GE   +    + ++ +    +      +        
Sbjct: 239 ITARQFLFRLREFEQMEMQFFISPGEEGKWY-DYWKEYRLKWHLSLGFKKKNYRFYNHDK 297

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
            A Y+ ++     K      E + + +R             +S      F       +  
Sbjct: 298 LAHYSQSACDIQFKFPFGFKELEGIHSRTDFDIKNHEI---FSKKKIRYFDIKKNLSYRP 354

Query: 313 QMGSYGIGAMRVVAAVIES--SHDGKGIIWPDSVAPFKISLINIKA------HDQVCRDA 364
            +    +G  R+  A+  S    +         V      L  IKA       D+     
Sbjct: 355 YIIETSLGLDRMFLAIFSSSLKEEILKNNTKRIVLKLPYILAPIKAAILPLVKDKQLIVI 414

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +KI+ RL  +   + +D+    IG ++   D +G PL + +    + D+ V I+ R + 
Sbjct: 415 GKKIFKRLK-LDYSLIYDEKD-SIGKRYRRQDAIGTPLCITIDYDSIKDNCVTIRFRDSM 472

Query: 425 IREDMSLEEVINYASHRFSNNR 446
           I++ + + E+           +
Sbjct: 473 IQKRILILEIKKNIEKLIDLKK 494


>gi|194751574|ref|XP_001958100.1| GF23682 [Drosophila ananassae]
 gi|190625382|gb|EDV40906.1| GF23682 [Drosophila ananassae]
          Length = 765

 Score = 77.5 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 77/276 (27%), Gaps = 22/276 (7%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                + + +              ++  +      E +  AD     +          + 
Sbjct: 454 IKSECLRFRQHMSNEMAHYACDCWDAEILTSYGWVECVGCADRSAYDLGQHTAATGVRLV 513

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--------- 284
           +E           S +         T     + + D+L +        +E          
Sbjct: 514 AEKRLPAPKTVEVSEIVPNKQALGKTFKKEAKNITDALAKLSLEEIGKVEQQLAGDGSYK 573

Query: 285 -----GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
                G     G        ++ K    ++    +     G  R++ A++E S   +   
Sbjct: 574 LTLSDGQTHDLGKDTISVKHSS-KTVHVEEFIPSVVEPSFGIGRIMYALLEHSFQCRDGD 632

Query: 340 WPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                      +  IK      +++   +   +K+ + L+K       DD    IG ++A
Sbjct: 633 EQRCYFTLPSLVAPIKCSILPLSNNADFQPYTQKLSSALTKAELSHKVDDSSGSIGRRYA 692

Query: 394 VADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIRED 428
             D +  P  + V    + +   V ++ R T  +  
Sbjct: 693 RTDEIAIPYGITVDFDTLKEPHTVTLRDRNTMKQVR 728



 Score = 42.0 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+ A+ R+        +E+    L   
Sbjct: 159 LLKRRFFYDQSFAIYGGITGQYDFGPMGCALKSNILALWRQYFALEEQMLEVDCSILTPE 218

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  + +   M++     + 
Sbjct: 219 PVLKASGHVERFADLMVKDVKTGEC 243


>gi|307102784|gb|EFN51052.1| hypothetical protein CHLNCDRAFT_141561 [Chlorella variabilis]
          Length = 641

 Score = 77.5 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 70/182 (38%), Gaps = 12/182 (6%)

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA---AVI 329
           E    + R ++V    +    YS  + A++  +  +  +       +G+    +    V 
Sbjct: 365 EAMVGAGRALQVAQSHHLADNYSRALGASYSTSAEQQEWGGEFMSQMGSGLRASLLGGVT 424

Query: 330 ESSHDGKGIIWPDSVAPFKISLINI---KAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
            +  D  G+  P ++AP ++ +  +     + Q   D  E++ A L+  G  V  D+   
Sbjct: 425 LAHGDDAGLALPPTLAPVQVVITPVLTRSCNRQGLADEAERVRAALAAAGVRVAVDNRRL 484

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR----LTGIREDMSLE--EVINYASH 440
           +   +F  ++ LG PL++ +G + +      +  R      G    +S E   ++     
Sbjct: 485 KPAVRFRASEQLGAPLRIEIGPQDIKARSCVVARRTIPGRAGKLRGVSTEPQALVESVLE 544

Query: 441 RF 442
             
Sbjct: 545 LL 546


>gi|294101094|ref|YP_003552952.1| YbaK/prolyl-tRNA synthetase associated region [Aminobacterium
           colombiense DSM 12261]
 gi|293616074|gb|ADE56228.1| YbaK/prolyl-tRNA synthetase associated region [Aminobacterium
           colombiense DSM 12261]
          Length = 509

 Score = 77.5 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 3/100 (3%)

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           PF + +I     D+   +    +Y  +   G    +DD  E+ G++FA  +L G P +V+
Sbjct: 409 PFDVDIIVPSIKDETAMELATNLYHEMVHQGVVALFDDRNERAGAKFADFELFGIPAKVV 468

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           VG K  ++  VE+++      ++M    V  + S   +++
Sbjct: 469 VGRK-AAEGIVEVQY--GEEVKEMQACHVTCFLSSLLNDD 505



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVN-AIIRE 59
          MR +    P L++ P   +      +LR G       G +S LPLG    DNV    I  
Sbjct: 1  MRMTTLLTPTLKKEPAGWQDPGAIRLLRGGYALDLHHGEWSLLPLGALLRDNVAWTFIHA 60

Query: 60 EQNRTGAIEM 69
            +  G  ++
Sbjct: 61 FMD-GGFQQL 69


>gi|70732277|ref|YP_262033.1| histidyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
 gi|83305875|sp|Q4K6V0|SYH_PSEF5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|68346576|gb|AAY94182.1| histidyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
          Length = 429

 Score = 77.5 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 60/420 (14%), Positives = 127/420 (30%), Gaps = 24/420 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP            +    +  G  ++ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRYFEGTVARLLDNYGYKQIRMPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H  +        + I   FR E RP+ G  R    
Sbjct: 70  FEDRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHE-RPQKGRYRQFHQ 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR--AESGPIGGDLSHEFIVL 213
           +  + ++ D     ++       +             +     AE+     D   EF+  
Sbjct: 129 IGCEVFNLDGPDIDAELIVLTWRLWGELGIRDAVKLELNSLGTAEARARYRDALVEFL-S 187

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-------- 265
           A   +      +     P+   +T   D  ++     +        S VH E        
Sbjct: 188 ARMDKLDEDSQRRLKTNPLRVLDTKNPDTQAVLVDAPKLADYLDEESRVHFEGLKARLDA 247

Query: 266 -----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 +   L       ++ +        G + ++     + G    +      + G+G
Sbjct: 248 AGIPYVINPKLVRGLDYYSKTVFEWVTDKLGAQGTVCAGGRYDGL--VEQMGGKPTSGVG 305

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
               +  ++      + +    S           +A +       E++  +L      + 
Sbjct: 306 FAMGIERLVLLLETLEQVPEEISRQVDVYLCAFGEAAELAALALSERVRDQLP--NLRLQ 363

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYAS 439
            +       SQF  AD  G    +I+G   ++   V  K  R  G ++ ++ + +  + +
Sbjct: 364 INAGAGSFKSQFKKADKSGALYALILGDDELAQQVVGFKPLRGQGEQQSIAWDALAAHLA 423


>gi|71281687|ref|YP_270901.1| histidyl-tRNA synthetase [Colwellia psychrerythraea 34H]
 gi|83305864|sp|Q47WC1|SYH_COLP3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|71147427|gb|AAZ27900.1| histidyl-tRNA synthetase [Colwellia psychrerythraea 34H]
          Length = 426

 Score = 77.5 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 58/422 (13%), Positives = 117/422 (27%), Gaps = 34/422 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V  ++R   +  G  E+ +P ++S  L+    G   D   KEM    D N
Sbjct: 17  LPSETNIWQMVETVLRRVASNYGFAEIRMPIVESTALFKRGIGEVTDIVEKEMYTFDDLN 76

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P            H   Y      +Y +   FR E   +    +  +F ++  
Sbjct: 77  GDSLTLRPEGTASCVRAGNQHGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQFGLEAF 135

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
                TP+            +  +     +        S     +     I      E  
Sbjct: 136 GIA--TPDIDAEIILLTSRLWRELGINEFVTLELNSLGSNEERANYREALIAYLLEHEEL 193

Query: 221 VFCSK--DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH-------------NE 265
           +           P+   ++    +    +   + +  +   +  H             N 
Sbjct: 194 LDEDSKRRMHTNPLRVLDSKNPQVQEALTNAPKLSDHFGEETQTHFDTLCARLDAAGINY 253

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMR 323
            L + L        R +        G + ++     + G              + +G  R
Sbjct: 254 VLNERLVRGLDYYNRTVFEWVTTTLGAQGTICAGGRYDGLVEQLGGKATPAFGFALGIER 313

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
           +V  + E           D+          +         A  K+  +         +  
Sbjct: 314 LVLMLTELEKVTNIRPQVDAYVVILGDDAQV---------AANKLAEQWRDQVPEIRLQC 364

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASH 440
              G  +  Q   AD  G  + +I+G   ++  KV +K+ R    +E +   +V +  S 
Sbjct: 365 HCGGGNMKKQLKRADKSGAQIALILGDDEITQEKVMVKYLRGQKEQESIEFTQVSSLLSE 424

Query: 441 RF 442
             
Sbjct: 425 LI 426


>gi|210632315|ref|ZP_03297282.1| hypothetical protein COLSTE_01176 [Collinsella stercoris DSM 13279]
 gi|210159631|gb|EEA90602.1| hypothetical protein COLSTE_01176 [Collinsella stercoris DSM 13279]
          Length = 438

 Score = 77.1 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 53/427 (12%), Positives = 115/427 (26%), Gaps = 37/427 (8%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW------------VE-----SG-RYDS 88
            +A   +  I +E     G   +  P ++  D++             E     SG  +  
Sbjct: 17  MRAWQRMQRIAQETFEPYGFDAIETPAIEQLDVFVHGIGQSTDVVRKEMFRVFSGANFAR 76

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIF-RSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
             +E      +  + +   P     +      +++    + PF  +  +  FR E   + 
Sbjct: 77  VLEEGTDTKLKAKQRLALRPEGTAGVVRSVVENNLVPQGSTPFKAWYAEAMFRGERPQKG 136

Query: 148 GVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
              R R+F            P         +   + R+   L    + + +   P     
Sbjct: 137 ---RLRQFHQVGIEWLGAPDPAADAECIIMLMELFKRLGFDLSKLRLLINSMGDPSCRPA 193

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-----------NSIVEQWTAP 255
             E +           C +      +                        + + +     
Sbjct: 194 YRETVRQFILDHANEMCDECRERAELNPLRAFDCKNPHCHEVMQGAPLMRDCLCDDCREH 253

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y       +    + + +   V         +F      +   S    G       ++ G
Sbjct: 254 YEQVKRYLDAAGIEYVEDPTLVRGLDYYTRTVFEVEAPGAGVGSIGGGGRYDGLVELEGG 313

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
               G      AV           +   +   + S + I       R     +   L  +
Sbjct: 314 KPTPGVG---FAVGFERIALALEAFGVELGGQEPSCVFIANAGADLRGEVFALSRELRGL 370

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G     D  G+ + +QF  AD LG    VI+G   ++  KV++++  T     +   +  
Sbjct: 371 GVRTECDYQGKSLKAQFKQADKLGASHIVIIGGDELAAGKVKLRNMGTHDERLVERADAA 430

Query: 436 NYASHRF 442
           +  +   
Sbjct: 431 SAIAQLL 437


>gi|118594983|ref|ZP_01552330.1| histidyl-tRNA synthetase [Methylophilales bacterium HTCC2181]
 gi|118440761|gb|EAV47388.1| histidyl-tRNA synthetase [Methylophilales bacterium HTCC2181]
          Length = 421

 Score = 77.1 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 66/428 (15%), Positives = 125/428 (29%), Gaps = 38/428 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG---RYDSYGKEML 94
           G Y   P  QK      A +    ++    E+ +P ++S DL+  SG   + D   KEM 
Sbjct: 10  GFYDVAPERQKLWRYFEATVLSVLDQYHYQEIGLPIVESTDLF-ISGVGTQTDIVEKEMY 68

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D  +   +                     N P   +     FR E   +    R R+
Sbjct: 69  SWIDPLNSDNLTLRPEGTAGCVRAVIEGSLTYNGPTKLFYRGPMFRHENVQKG---RQRQ 125

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV-- 212
           F      +F L+   S        +   R++  LGL +I +   S     D      V  
Sbjct: 126 FHQIGVEAFGLSDPSSDAE---QILLLSRLWKALGLTNITLELNSIGDPADREAYRKVLI 182

Query: 213 ---LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF- 268
                +  E      +   D P+   ++    +  + +   +     +A +  H + L  
Sbjct: 183 TYFEDNKAELDEDAQRRLYDNPLRILDSKNPSMQDMLNSAPKLRESISAEARTHFDSLCQ 242

Query: 269 ------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                       D L        R +        G++ ++     +           +  
Sbjct: 243 TLDNHGVPYILSDRLVRGLDYYNRTVYEWVTKDLGSQGTVAGGGRYD---------YLVE 293

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
              G                 ++   ++       I I       R     I   L    
Sbjct: 294 KLGGVTTPACGFAIGIERIILLLESKALDGLMNPDIYIVNLGDEARSKALMIAESLRDHH 353

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVI 435
            ++  +  G    SQ   AD     +  I+G   V    ++IK  R  G +  +  ++V+
Sbjct: 354 YNIAVNMEGASFKSQMKKADKSHANIAFIIGEDEVEKKCIQIKLLREEGSQVSVKDKDVL 413

Query: 436 NYASHRFS 443
            + +   +
Sbjct: 414 THLTSMIN 421


>gi|330894495|gb|EGH27156.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 429

 Score = 77.1 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 62/426 (14%), Positives = 131/426 (30%), Gaps = 34/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP       +    +    +  G  ++ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRHFEGTVSRLLDNYGYRQIRMPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN  ++   P            H  +        + I   FR E   +    R R+F
Sbjct: 70  FADRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQF 126

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---GPIGGDLSHEFI 211
                  F+L  P+         +  +  +  R  +K       +        D   EF+
Sbjct: 127 HQIGVEVFNLDGPDIDAELIVMTWRLWGMLGIRNAVKLELNSLGTSEARARYRDALVEFL 186

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE------ 265
             A   +      +     P+   +T   +  ++     +        S VH E      
Sbjct: 187 -SARLDQLDEDSQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRVHFEGLKARL 245

Query: 266 -------KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                   +   L       ++ +        G + ++     + G   +         G
Sbjct: 246 DAAGIPYVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGLYDGLVEQMGGKPTT--G 303

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
           +G    +  ++        +    +           +A +       EK+  +L  +   
Sbjct: 304 VGFAMGIERLVLLLETLGQVPEEIARQVDVYLCAFGEAAELAALALTEKVRDQLPSLRLQ 363

Query: 379 VFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEV 434
           V         G   SQF  AD  G    +I+G + ++   + +K  R  G +++++ + +
Sbjct: 364 V-----NAGAGSFKSQFKKADKSGALYALILGEEELAAKVIGVKPLRGQGEQQNIAWDAL 418

Query: 435 INYASH 440
             + + 
Sbjct: 419 SEHLAS 424


>gi|149602610|ref|XP_001521270.1| PREDICTED: similar to Glycyl-tRNA synthetase, partial
           [Ornithorhynchus anatinus]
          Length = 751

 Score = 77.1 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 82/288 (28%), Gaps = 25/288 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 459 FRQHMDNEMAHYACDCWDAEAKTSYGWIEIVGCADRSCYDLTCHAQATKVPLVAEKPLKE 518

Query: 241 --------------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                          I        +    + A  D H     ++L  ++       E G 
Sbjct: 519 PRTVSMVQFEPNKGAIGKAYKKDAKLVLEHLAACDEHRVAQLEALLTDEGEFTIETE-GR 577

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            F              K    ++    +     G  R++  V+E +   +      +   
Sbjct: 578 TFQVTRDMVGVKRFQ-KTLHVEEIVPSVIEPSFGLGRILYTVLEHTFHIRQGDEQRTFFS 636

Query: 347 FKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           F  ++   K      + +Q      +++ A L++ G     DD    IG ++A  D +G 
Sbjct: 637 FPAAVAPFKCSVLPLSQNQEFMPFVKELSAALTRCGVSHKVDDSSGSIGRRYARTDEIGV 696

Query: 401 PLQVIVGSKFVSDS--KVEIKHRLTGIREDMS-LEEVINYASHRFSNN 445
              + +    V+       ++ R +  +     + E+ +      S  
Sbjct: 697 AFGITIDFDTVNREPHTATLRDRDSMRQVRAQVVSELPDVVRDLASGR 744



 Score = 50.1 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 1/109 (0%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y   P+G    +N+  + R+        +E+    L    +   SG  D +   M++
Sbjct: 175 SGLYDLGPVGCALKNNMIQLWRQHFIQEEQILEIDCTALTPEPVLKTSGHVDKFADFMVK 234

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
                +           +   +      + +         Q+    +  
Sbjct: 235 DMKNGECFRADHLLKAHLQKLMSDKKCSAEKKAEMESVLTQMDNYGQQE 283


>gi|327537914|gb|EGF24613.1| histidyl-tRNA synthetase [Rhodopirellula baltica WH47]
          Length = 442

 Score = 77.1 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 82/456 (17%), Positives = 132/456 (28%), Gaps = 65/456 (14%)

Query: 31  MIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI   + KG   +LP      + +    RE     G   +  PTL+  ++    G  D  
Sbjct: 1   MIQPRTLKGFRDYLPAAMIPREQLMQTAREVFRSFGFAPIDTPTLEHLEILTGKG-SDET 59

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            +++    D   + +         +      H       PF  Y I   +R E       
Sbjct: 60  DRQLYSFEDNGGRPVGMRFDLTVPLARFAAQH-IGTLGTPFKRYHIAPVWRGEKPQEG-- 116

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R REF+  D  +   T E +      +  + L     +G+ +  +   +  I      E
Sbjct: 117 -RYREFVQCDFDTIGTTSELADIEAVCVIDALL---RAIGIDAFTISINNRAILT-GLLE 171

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA-ATSDVHNEKLF 268
            + LAD     +          I  E T  + + S     EQ  A    A  D   E + 
Sbjct: 172 SLGLADKTTPVLRSLDKLGK--IGREKTANEMVESAGVTAEQADAVLRLAECDGDAESIL 229

Query: 269 DSLPE---NKRVSARGIEV--------------------------------GHIFY---- 289
            SLPE       +A GIE                                 G IF     
Sbjct: 230 ASLPEITGGNETAAAGIERLTQIYRGALASGVSPDRLKIDVSIARGLDYYTGVIFETTLD 289

Query: 290 -FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                 S+     +    G      +   G             S      +         
Sbjct: 290 ELPGIGSVCSGGRYDNLAGLYTKQHLPGIGASLGLDRLLAALESLGRLSGVSKPCAVFVP 349

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
                    D+  RD   K+ ++L   G  V      +++G Q   AD  GF + +I G 
Sbjct: 350 FF-------DKGHRDDYLKLASQLRDAGIGVEVYPEPKKLGQQLKYADSQGFAVAIIAGG 402

Query: 409 KFVSDSKVEIKHRLTGIREDM-----SLEEVINYAS 439
                  V++K   T   +D+     S + +I    
Sbjct: 403 NEWEAGTVQVKTLATKESQDVAYSHESPDALIEAIQ 438


>gi|311265228|ref|XP_003130565.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional aminoacyl-tRNA
            synthetase [Sus scrofa]
          Length = 1432

 Score = 77.1 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 5/155 (3%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
             G Y   P      +++      E  + G      P   S   L  E      +  E+  
Sbjct: 1042 SGCYILRPWAYSIWESIKDFFDAEIKKLGVENCYFPMFVSQGALETEKTHIADFAPEVAW 1101

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1102 VTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLR 1161

Query: 152  SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            +REFL ++ +S   T E +     ++   Y +++ 
Sbjct: 1162 TREFLWQEGHSAFATFEEAAEEVLQILDLYAQVYE 1196



 Score = 44.7 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 397  LLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              G P+++ VG + +     V ++ R TG +  ++  E          +
Sbjct: 1280 KQGVPVRLEVGPRDMKSCQFVAVR-RDTGEKLTLAENEAETKLHALLED 1327


>gi|297182947|gb|ADI19095.1| histidyl-tRNA synthetase [uncultured alpha proteobacterium
           HF0070_34A12]
          Length = 420

 Score = 77.1 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 76/429 (17%), Positives = 128/429 (29%), Gaps = 35/429 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q ++G    +P        V    R      G  EM+ P  + A+++        D   K
Sbjct: 5   QPARGTTDLMPAAMAGHQRVIGTARAAAGLYGFQEMATPMFEFAEVFSRPLGDSSDVVTK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           E     DR  + +   P +   +     S+  + ++LP  F+     FR E   +    R
Sbjct: 65  ETYNFTDRGGETLTLRPENTAGVVRAMISNGLT-QSLPLKFFYAGPMFRYERPQKG---R 120

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI----FHRLGLKSIPMRAESGPIGGDLS 207
            R+F         L    +           L             +    +ES        
Sbjct: 121 MRQFHQIGIEYLGLCDGLADAEIIGCGARILDDLGVLDRCTLHLNSLGDSESRQAYRAAL 180

Query: 208 HEFIVLAD------------TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            +F+   +            +   ++  SKD  D  I +E    D  ++ +     +   
Sbjct: 181 VDFLNAHEADLSEDSRTRLTSNPLRILDSKDAGDRAIIAEAPSLDAFLN-DGSRRHFDNV 239

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             A         FD L     V          F F T  +L    T  G    D   +M 
Sbjct: 240 TGALDGAGISWSFDPL----LVRGLDYYCHTAFEFITD-ALGAQGTVLGGGRYDGLSEML 294

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
                     AA +E      G + P +     + +      D     A   +   L   
Sbjct: 295 GGPPVPGVGWAAGVERLAMLVGDVEPAAPRVAVMPM------DGDAEGAAFALAESLRGA 348

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V     G  IG +   AD  G  + VI+GS  V+    +I+    G + ++   E+ 
Sbjct: 349 GIAVDL-PAGGAIGKRLKKADRAGVRIAVILGSDEVAGGSAQIRDLGAGRQREVPQAELA 407

Query: 436 NYASHRFSN 444
           +      S 
Sbjct: 408 SVLHGMLSE 416


>gi|313902373|ref|ZP_07835776.1| histidyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
 gi|313467304|gb|EFR62815.1| histidyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
          Length = 437

 Score = 77.1 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 59/408 (14%), Positives = 111/408 (27%), Gaps = 28/408 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADR-NDKAMIY 106
              + A IR    R G  E+  P +++ +L+  +     D   KEM  L    +D+ ++ 
Sbjct: 21  WQALEARIRHVAARFGFGELRTPVIEARELFQRTVGETTDIVQKEMYVLTPPGSDRQLVL 80

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P         +  +       P   + IQ  FR E        R R+ +   A  F   
Sbjct: 81  RPEGTAAAVRAYLENGLHNGPQPVKLFYIQPMFRHERPQAG---RYRQHVQFGAEIFGAG 137

Query: 167 PEGSKHSY---------NKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHEFI 211
              +                        + +G  +   R          P   +L  +  
Sbjct: 138 EATADAEIIALAMTLFAELGLEGLEVHLNSIGCPACRPRYRQALLEYYRPRAAELCADCR 197

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +T   ++   K   D P  +      D +  +          A  +     +L   L
Sbjct: 198 ARLETNPLRLLDCKVPADQPHKAGAPRTVDYLCQDCRAHFDELQSALDALGIAYRLDPGL 257

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   R +        G + ++     + G             G G       +   
Sbjct: 258 VRGLDYYTRTVFEIKYGGLGAQDTVCGGGRYDGLIELLGGPPTPGVGFGMGLERLLLTLE 317

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           +                     +    QV R     +   L   G  V  D +G  + +Q
Sbjct: 318 AAGRPPGARRP-------LDAYVAVAGQVPRTRVLALVQALRHQGLAVDMDHVGRSLKAQ 370

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              A  L     VI+G    +  +  ++   +G +  + L E+     
Sbjct: 371 LRAAGRLPVRYAVILGDDEWARGEAAVRELASGQQRRVPLGELAAVLR 418


>gi|260578817|ref|ZP_05846724.1| histidine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
 gi|258603115|gb|EEW16385.1| histidine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 443

 Score = 77.1 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/419 (11%), Positives = 121/419 (28%), Gaps = 17/419 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+  ++P        V        +  G   + +P  +   L+        D   KEM  
Sbjct: 27  GVPDYVPPTSAEFKAVKDAFTSAAHAAGYEHVELPIFEETSLFARGVGESTDVVSKEMYT 86

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR  +++   P     +      H      LP         FR E        R R+ 
Sbjct: 87  FADRGGRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLVYNGPFFRYERPQAG---RYRQL 143

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIV 212
                 +  +           +           G +         +  P       +F+ 
Sbjct: 144 QQVGVEAIGVDDPALDAEVIALAHRCFSSIGLNGFRLELTSLGDWDDRPAYRQKLQDFLA 203

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                E     ++      +  +  +  ++++   ++    +  +         L D L 
Sbjct: 204 TLPLDEETQRRAQLNPLRVLDDKRPEMQEMLAEAPLMLDHLSDSSREHFETVTGLLDDLG 263

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               ++ R +  G  +Y  T +          +         G       + ++ +    
Sbjct: 264 VGYTINPRMV-RGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQDLSGIGFGL 322

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK----IYARLSKVGCDVF--WDDMGE 386
              + ++  ++      +   +  +        ++    I   L + G      + D G 
Sbjct: 323 GVDRALLALEAEEKRASTGRRVDVYGVALGAEAKRRMVGIVDDLRERGVSADMSYGDRGL 382

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + G+    AD  G    +++G K +++  V +K      + ++ L  V+   + + ++ 
Sbjct: 383 K-GAM-KGADRAGALYALVLGDKELAEGTVTVKDLGAHEQHEVDLAAVVELLAEKTADR 439


>gi|225871432|ref|YP_002747379.1| histidyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
 gi|254782346|sp|C0MB21|SYH_STRE4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|225700836|emb|CAW95552.1| histidyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
          Length = 426

 Score = 77.1 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 60/406 (14%), Positives = 117/406 (28%), Gaps = 19/406 (4%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP+       V  + RE   +    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 13  LPVAAAKWQYVEGVARETFKQYHYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 73  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 129

Query: 159 DAYSF-DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFIVLA- 214
               F    P     +    +  + R+  +     +     A S         +++    
Sbjct: 130 GVECFGSANPATDVETIAMAYHLFERLGIKEVTLHLNSLGNAASRAAYRQALIDYLSPMR 189

Query: 215 -----DTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
                D+           +D     +     +  S+ + + E+  A + A   +      
Sbjct: 190 ETLSKDSQRRLDENPLRVLDSKEKEDKIAVANAPSILDYLDEESQAHFDAVRSMLEVLAI 249

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
             + +   V         IF F T+           A G+   +     G         +
Sbjct: 250 PYVIDTNMVRGLDYYNHTIFEFITEVDQSELT--ICAGGRYDGLVEYFGGPATPGFGFGL 307

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +   +   + I         A   +   + + G  V  D +G +I
Sbjct: 308 GLERLLLILDKQGVELPVEEGLDVYIAVLGAYANVAALALTQAIRRQGFTVERDYLGRKI 367

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            +QF  AD     + + +G   +   +  +KH  T     +S +++
Sbjct: 368 KAQFKSADAFKAKVVITLGESEIKTGQAVLKHNQTRQEMTVSFDQI 413


>gi|147906063|ref|NP_001089920.1| hypothetical protein LOC734988 [Xenopus laevis]
 gi|84570066|gb|AAI10736.1| MGC130901 protein [Xenopus laevis]
          Length = 740

 Score = 77.1 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 79/283 (27%), Gaps = 24/283 (8%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C       P+ +E    +
Sbjct: 430 FRQHMENEMAHYACDCWDAETKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKE 489

Query: 241 --------------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                          I        +    Y    D       + L + K       E G 
Sbjct: 490 PKTVNVTEFVASKGAIGKEYKKDAKLVLEYLNICDERFILEMEQLLQEKGEFTIETE-GK 548

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            F   TK  + +  + K    ++    +     G  R++  V E +   +      +   
Sbjct: 549 TFVL-TKDMVSVKKSQKTIYVEEIVPNVIEPSFGLGRIMYTVFEHTFQVRQGDEQRTYFT 607

Query: 347 FKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
           F   +   K      + +       +++   L+K G     DD    IG ++A  D +G 
Sbjct: 608 FPAIVAPYKCSVLPLSQNLEFMPFVKELSDALTKNGVSHKVDDSSGSIGRRYARTDEIGV 667

Query: 401 PLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHR 441
              + +    V+       ++ R +  +   ++ ++       
Sbjct: 668 AFGITIDFDTVNRTPHSATLRDRDSMRQIRAAVSDLPGVVRDL 710



 Score = 51.7 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 45/152 (29%), Gaps = 17/152 (11%)

Query: 9   PILQEN-----PRDAEIASHKLM---LRTGMIHQHS-------KGIYSWLPLGQKALDNV 53
             L+       P+D +I     M   L+    +  +        G+Y + P+G    +N+
Sbjct: 104 RTLEAKELSLQPKD-DIVDRAKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNI 162

Query: 54  NAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEE 112
               R+        +E+    L    +   SG  D +   M++     +           
Sbjct: 163 IQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAH 222

Query: 113 VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
           +   +      + +         Q+   ++  
Sbjct: 223 LQKLMSDKKCPAEKKQEMESVLTQMDNYNQQD 254


>gi|315641701|ref|ZP_07896746.1| histidine--tRNA ligase [Enterococcus italicus DSM 15952]
 gi|315482550|gb|EFU73084.1| histidine--tRNA ligase [Enterococcus italicus DSM 15952]
          Length = 431

 Score = 77.1 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 56/405 (13%), Positives = 110/405 (27%), Gaps = 19/405 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQFVEETARLLFKDYQFDEIRTPLFEHIEVISRSVGDTSDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLP--FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   F  +       P  +  Y     FR E   +    R R+F       F  
Sbjct: 80  PEGTAPIVRSFVENKLYGPEFPKPYKVYYTGPMFRYERPQKG---RLRQFHQIGVECFGS 136

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVF 222
             P             + ++        I    +  +         E++   +   +   
Sbjct: 137 KNPATDVEIMAMALAFFEQLGISDLRLVINTLGDSETRVSYRQALIEYLTPFEEQLSAD- 195

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKR 276
             +   + P+   ++       + +   Q        S  H E +   L       E   
Sbjct: 196 SKRRLHENPLRVLDSKDKKDKEIVANAPQILDYLTTESKTHFETVTAMLDTLGIVYEVDS 255

Query: 277 VSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
              RG++     IF          + +   A G+   +     G         +      
Sbjct: 256 NMVRGLDYYTHTIFEIMHDSDALGTQSTICAGGRYDNLIEEFGGESTPGFGFGIGIERVL 315

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                    +         +            K+   +   G     D MG +  +QF  
Sbjct: 316 LTLDSEGIELPTIDTIDAYVVHLGDETNVEALKLVQAIRNAGFSADRDYMGRKAKAQFKS 375

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           AD     L V +G   +++ +V+IK+  T +     L ++ +  +
Sbjct: 376 ADKAKARLVVTIGDSELAEQQVKIKNMATRVEATYPLAKIYDEFA 420


>gi|195494469|ref|XP_002094853.1| GE22046 [Drosophila yakuba]
 gi|194180954|gb|EDW94565.1| GE22046 [Drosophila yakuba]
          Length = 767

 Score = 77.1 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 75/276 (27%), Gaps = 22/276 (7%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                + + +              ++  +      E +  AD     +          + 
Sbjct: 456 IKPECLRFRQHMSNEMAHYACDCWDAEILTSYGWVECVGCADRSAYDLGQHTAATGVRLV 515

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--------------NKRVSA 279
           +E           S +         T     + + D+L +                    
Sbjct: 516 AEKRLPAPKTVEVSEIVPNKQALGKTFKKEAKNITDALAKLSLEEITKVEEQLSGDGQYK 575

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
                G     G        +T K    ++    +     G  R++ +++E S   +   
Sbjct: 576 LTTADGQSHELGKDTISVKHST-KTVHVEEFIPSVVEPSFGIGRIMYSLLEHSFQCRDGD 634

Query: 340 WPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                      +  IK      +++   +   +K+ + L+K       DD    IG ++A
Sbjct: 635 EQRCYFTLPPLVAPIKCSILPLSNNTDFQPYTQKLSSALTKAELSHKVDDSSGSIGRRYA 694

Query: 394 VADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIRED 428
             D +  P  + V    + +   V ++ R T  +  
Sbjct: 695 RTDEIAIPYGITVDFDTLKEPHTVTLRDRNTMKQVR 730



 Score = 42.0 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+ A+ R+        +E+    L   
Sbjct: 161 LLKRRFFYDQSFAIYGGITGQYDFGPMGCALKSNILALWRQYFALEEQMLEVDCSILTPE 220

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  + +   M++     + 
Sbjct: 221 PVLKASGHVERFADLMVKDVKTGEC 245


>gi|319442155|ref|ZP_07991311.1| histidyl-tRNA synthetase [Corynebacterium variabile DSM 44702]
          Length = 432

 Score = 77.1 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 55/426 (12%), Positives = 113/426 (26%), Gaps = 31/426 (7%)

Query: 32  IHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYD 87
           I   +   G+  ++P        V +      + +G   + +P  +   L+        D
Sbjct: 10  IQPFAAPKGVPDYVPPASVDFHAVRSTFETVIHNSGYGHIELPVFEETALFARGVGESTD 69

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
              KEM    DR  +++   P     +      H      LP         FR E     
Sbjct: 70  VVSKEMYTFEDRGGRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLTYSGPFFRYERPQAG 129

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI-------------FHRLGLKSIP 194
              R R+       +  +           +     R                     +  
Sbjct: 130 ---RYRQLQQVGVEAVGVDDPALDAEVVGLADRCFRALGLTGYRLELTSLGDDNCRPAYR 186

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
              +       L  E    A+    +V   K      +  +     D +  N      T 
Sbjct: 187 KTLQDFLFALPLDEETRKRAEINPLRVLDDKRPEVQEMLVDAPLMPDHLCDNCREHFETV 246

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                       L   L        +          G +  +     + G   +     +
Sbjct: 247 TGLLDDMGVEYVLNPRLVRGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQDL 306

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
              G G       V+  + +G        V  + + +                I  +L +
Sbjct: 307 SGIGFGLGVDRT-VLALAAEGVTPTSGRRVDVYGVPMGVDAKKKLAV------IIDKLRR 359

Query: 375 VGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G      + D G + G+    AD  G    +++G + ++D  V ++   +  + +++L+
Sbjct: 360 AGVSADMSYGDRGLK-GAM-KGADRAGARFALVLGEQELADGTVVLRDLSSRDQHEVALQ 417

Query: 433 EVINYA 438
           +VI   
Sbjct: 418 DVIEAV 423


>gi|162139069|ref|YP_597556.2| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|162139118|ref|YP_601442.2| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
          Length = 426

 Score = 77.1 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 60/417 (14%), Positives = 119/417 (28%), Gaps = 29/417 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++ R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 13  LPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 73  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 129

Query: 159 DAYSFDL-TPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG            I       
Sbjct: 130 GVECFGAANPATDVETIAMAYHLLEKLGIKDVTLHLNSLGSPESRSAYRQTLIDYLTPMR 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    +   S+ + + E+  A + A   +      
Sbjct: 190 DQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVKAMLEALDI 249

Query: 269 DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +   V         IF F     G+  ++     +    G     +   +G G   
Sbjct: 250 PYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               +I             ++       + +            ++   + + G     D 
Sbjct: 310 ERLLMII-------EKQGLALPIETEMDVYLAVLGDGANSKALELVQAIRRQGFTAERDY 362

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+++   ++
Sbjct: 363 LGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQEVEVSFEDMMTNFAN 419


>gi|229145901|ref|ZP_04274280.1| Histidyl-tRNA synthetase 1 [Bacillus cereus BDRD-ST24]
 gi|296503833|ref|YP_003665533.1| histidyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|228637509|gb|EEK93960.1| Histidyl-tRNA synthetase 1 [Bacillus cereus BDRD-ST24]
 gi|296324885|gb|ADH07813.1| histidyl-tRNA synthetase [Bacillus thuringiensis BMB171]
          Length = 426

 Score = 77.1 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 71/427 (16%), Positives = 128/427 (29%), Gaps = 41/427 (9%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 12  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 71

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 72  GKRDLALRYDLTIPFAKVVA--MNPNLRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 126

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ES  I  +L+ + I+ 
Sbjct: 127 VDIVGVESVMAEAELMSMAFELFQTLNLEVTIQYNNRKLLNGILESINIPTELTSDVILS 186

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT    +  ++    E +  P  A      
Sbjct: 187 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADFKEAFNNPLVADGVNEL 246

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           ++L   L       A GI    IF       L M                 S G G  R 
Sbjct: 247 QQLQQYL------IALGINENTIFNPFLARGLTMYTGTVYEIFLKDRSITSSIGSGG-RY 299

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARL 372
              +     D              +    +   + +   A            C  I  +L
Sbjct: 300 DNIIGAFRGDNMNYPTVGISFGLDVIYTALSQKETISSTADLFIIPLGTELQCLPIAQQL 359

Query: 373 SKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
                  V  +  G ++      A+    P  +I+G   +S + V +++   G    + +
Sbjct: 360 RSTTSLKVELELAGRKLKRALNYANKENIPYVLIIGENELSTNTVVLRNMKEGSEVKVPI 419

Query: 432 EEVINYA 438
             + NY 
Sbjct: 420 SSLSNYL 426


>gi|119505388|ref|ZP_01627462.1| histidyl-tRNA synthetase [marine gamma proteobacterium HTCC2080]
 gi|119458843|gb|EAW39944.1| histidyl-tRNA synthetase [marine gamma proteobacterium HTCC2080]
          Length = 426

 Score = 77.1 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 64/426 (15%), Positives = 126/426 (29%), Gaps = 33/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        + A++     + G  E+ +P +++  L+  S G   D   KEM  
Sbjct: 9   GMVDILPEDTFLWQQLEAVMGTVLQQYGYQEIRLPIIEATQLFSRSIGEVTDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN +++   P            H    +      +     FR E   +    R R+F
Sbjct: 69  FADRNGESLSLRPEGTASCVRAVVQHNL--QQTVQKLWYQGPMFRYERPQKG---RQRQF 123

Query: 156 LMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---IGGDLSHEFI 211
                      TP+            +  +  R  L        S     +  +   EF+
Sbjct: 124 HQLGVEGFGVATPDLDAELILVSNALWRGLGVRELLTLEVNSIGSPAARGLFREALVEFL 183

Query: 212 VLA------------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                          +T   ++  SK+     + ++     D +   S  +        T
Sbjct: 184 SDHRTTLDDDSQRRLETNPLRILDSKNVDTQALLTDAPALSDFLDEQSRDDFAALLAMLT 243

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +      + + L        + +        G + ++     + G   +       + G 
Sbjct: 244 AAGQPYVVNERLVRGLDYYNKTVFEWTTDALGAQGTVCGGGRYDGLVTQFGGRDTPAAGF 303

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV-CRDACEKIYARLSKVGCD 378
                   ++    + +      SV    I ++   A  Q+      E +   L      
Sbjct: 304 AIGLERLVLLLKGLEAQ------SVPQTDIYVVTADAKSQLHALPRVEALRQALPGRAIQ 357

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINY 437
                 G    SQF  AD  G    ++ G    +   V +K  R  G +  +   +V  +
Sbjct: 358 AHL--GGGSFKSQFKRADRSGARFALVYGESEQATESVTLKPLRSEGEQVTLPDNKVAAF 415

Query: 438 ASHRFS 443
            +  F+
Sbjct: 416 LAESFA 421


>gi|293604542|ref|ZP_06686947.1| histidine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
 gi|292817123|gb|EFF76199.1| histidine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
          Length = 431

 Score = 77.1 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 57/429 (13%), Positives = 119/429 (27%), Gaps = 25/429 (5%)

Query: 32  IHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-D 87
             + +   G+   LP      +    I+R      G   +  P L+   L+    G   D
Sbjct: 8   FQKVAAIRGMNDVLPGPSARWEQFEEIVRGWLRGYGYRNVRTPVLEHTRLFTRGIGEVTD 67

Query: 88  SYGKEMLRLADRNDKA-MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
              KEM    D  +   +   P     +      H   Y   P   Y I   FR E   R
Sbjct: 68  IVEKEMYTFTDALNGDSLTMRPEMTAGIVRASIEHNMLYDR-PQRVYSIGPVFRHERPQR 126

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
               +  +  ++         +             L +       +   +          
Sbjct: 127 GRYRQFHQIDVEALGFVGPDVDAELIVMLARLWKLLGLKDVRLELNSLGQPAERAAHRAA 186

Query: 207 SHEFIVLA-----DTGETQVFCSK-DFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAAT 259
             E +        + G+ +++ +    +D   P+     +    L   + ++  A +   
Sbjct: 187 LIEHLEKHRDILDEDGQRRLYTNPLRVLDTKNPAMQEMANSAPRLFDFLGDESRAHFEGV 246

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                E   +     + V         +F + T   L    T  G    D  +++     
Sbjct: 247 CQRLTEAGIEYSLNPRLVRGLDYYNLTVFEWVTDR-LGSQGTVCGGGRYDGLIELLGGKP 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                 A  +E   D                 + +    +  +     +   L   G  V
Sbjct: 306 APAVGFAIGMERLLDLWEQSVQLEAPA--ECDVYVVHQGEDAQRLAASVGETLRDAGLSV 363

Query: 380 FWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRL-----TGIREDMSLE 432
                    G +  F  AD  G  + VI+G+  V+     +K+          ++ ++L 
Sbjct: 364 IV--HAGSAGFKSQFKRADASGARVAVILGADEVASQTASVKYLRADAQGDTAQQQVALA 421

Query: 433 EVINYASHR 441
           ++    +++
Sbjct: 422 DLAAVLNNK 430


>gi|323341709|ref|ZP_08081942.1| histidine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464134|gb|EFY09327.1| histidine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 426

 Score = 77.1 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 58/402 (14%), Positives = 117/402 (29%), Gaps = 15/402 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGP 108
             ++  I RE  +R    EM  P  +   ++   +   D   KEM    DR ++++   P
Sbjct: 22  WQHIERIAREMCDRYHITEMRTPVFEHTHVFARGNDGSDVVNKEMYTFEDRGNRSLTLKP 81

Query: 109 THEEVMTDIFRSHIKSYRNLP-FTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSF 163
                +   F  H           ++ I   FR E       R       EFL +     
Sbjct: 82  EGTAGLVRSFVEHKLYATGGALQRYFYIAPNFRYERPQAGRLRIFHQFGVEFLGEANPYI 141

Query: 164 DLTPE-----GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
           D+          K      F   +        +    +A      G L           E
Sbjct: 142 DIESMLVGINILKEVGITQFKLVVNTLGDQESQDAYKKALRDHFAGHLDTMCADCQRRYE 201

Query: 219 TQVFCS-KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
                     +D    +  T   +   LN    ++   +       +E+      +++ V
Sbjct: 202 QNPLRMLDCKVDQEHEAMKTAPINHDYLNDASREY---FEELKRTLDEQGIAYEIDSRLV 258

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                    ++   +      S +   A G+   +     G     +  A+         
Sbjct: 259 RGLDYYHHTVYELISTDPKAASQSTIFAGGRYSKLVEYFGGPSVDAIGFAMGLERLLLYA 318

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
            +            +           +  K+   L + G D   D   + + +QF   D 
Sbjct: 319 DLAGVEFDTEDRIDVFGMPLGHEANGSMFKMIETLREAGYDADMDYYNKSMKAQFKQVDR 378

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
               + +I GS  V+++ V +K+  T  +  ++ ++V+    
Sbjct: 379 FNAKIAMICGSDEVAENVVTLKNIETQEQCRVAHDDVVEQVR 420


>gi|84995882|ref|XP_952663.1| prolyl-t-RNA synthase [Theileria annulata strain Ankara]
 gi|65302824|emb|CAI74931.1| prolyl-t-RNA synthase, putative [Theileria annulata]
          Length = 460

 Score = 76.7 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 3/175 (1%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           + S GIY+ LPLG + ++ ++ I   E  + GA+++S P L   ++   +G       E+
Sbjct: 74  KLSSGIYTTLPLGHRIINRISNIFNVELYKLGAVQLSFPLLNPDNVVSNTGNTVG-DSEL 132

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSH--IKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +++           T E++   + ++     S   LP   YQI  KFRDELR   G +R
Sbjct: 133 FKVSRNGSLEYRLSGTCEDLCNVVLKNELTPLSKLQLPVLLYQINTKFRDELRVNEGKVR 192

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            REFLM D YS   + + S  +Y+ +   ++ I   LGL+   +      I    
Sbjct: 193 LREFLMLDLYSLHSSEQCSDSTYSLVLECFVNILRLLGLQFTTLNCNRNNIFSHE 247



 Score = 74.4 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 6/126 (4%)

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +EVGH+F FGT+YS      ++ +  +   + M SYGIG  R++  +I +  D  GI  P
Sbjct: 264 LEVGHLFKFGTRYSDTYGLEYEVSGRRREKLYMNSYGIGINRLLNVLINNYSDEFGIKLP 323

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             VAP+ I++I+    D        +I   L K G  V +DD  + I ++   +  +G P
Sbjct: 324 QLVAPYDITIIDSTTKD------GWQISRGLMKKGLTVLYDDRNDTIKNKLLDSKRIGIP 377

Query: 402 LQVIVG 407
             +I+G
Sbjct: 378 HILILG 383


>gi|146321639|ref|YP_001201350.1| hypothetical protein SSU98_1792 [Streptococcus suis 98HAH33]
 gi|145692445|gb|ABP92950.1| SerS [Streptococcus suis 98HAH33]
 gi|292559062|gb|ADE32063.1| SerS [Streptococcus suis GZ1]
          Length = 467

 Score = 76.7 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E    G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 208 FYKNLGARLERALYNFMLDEHIAEGYQEIITPYMVNHDSMFGTGQYPKFKED---TFELA 264

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R+ I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 265 DTNFVLIPTAEVPLTNYYRNEILEEKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +           +   I  +LGL    +   +G +G   +     E  +
Sbjct: 325 KVEMVKFATPEQSYDELEKMT-ANAENILQKLGLPYRVLALCTGDMGFSAAKTYDLEVWI 383

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 384 PAQNAYREISSCSNTEDFQARRAQIRYRDAA 414


>gi|297180647|gb|ADI16857.1| histidyl-tRNA synthetase [uncultured alpha proteobacterium
           HF0010_13E22]
          Length = 469

 Score = 76.7 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 129/419 (30%), Gaps = 27/419 (6%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q ++G    +P        V    R      G  EM+ P  + A+++        D   K
Sbjct: 54  QPARGTTDLMPAAMAGHQQVIGKARAAAGLYGFQEMATPMFEFAEVFSRPLGDSSDVVTK 113

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           E     DR  + +   P +   +     S+  + ++LP  F+     FR E   +    R
Sbjct: 114 ETYNFTDRGGETLTLRPENTAGVVRAMISNGLT-QSLPLKFFYAGPMFRYERPQKG---R 169

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI----FHRLGLKSIPMRAESGPIGGDLS 207
            R+F              +           L             +    +ES        
Sbjct: 170 MRQFHQIGIEYLGPRDGLADAEIIGCGARILDDLGVLDRCTLHLNSLGDSESRQAYRAAL 229

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +F+   +   ++          P+   ++      ++ +   +  A     S  H + +
Sbjct: 230 VDFLNAHEADLSED-SRTRLTSNPLRILDSKDAGDRAIIAEAPRLDAFLNDGSRWHFDSV 288

Query: 268 FDSLPENKRVS------ARGIE--VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
             +L              RG++      F F T  +L    T  G    D   +M     
Sbjct: 289 TGALDGAGISWSFDPLLVRGLDYYCHTAFEFITD-ALGAQGTVLGGGRYDGLSEMLGGPP 347

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                 AA +E      G + P +        + +   D     A   +   L  VG  V
Sbjct: 348 VPGVGWAAGVERLAMLVGDVVPAAP------RVAVMPTDGDAEGAAFALAESLRGVGIAV 401

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
                G  IG +   AD  G  + VI+GS  V+    +I+    G ++++   E+ +  
Sbjct: 402 DL-PAGGAIGKRLKKADRAGVRIAVILGSDEVAGGSAQIRDLGAGKQQEVPQAELASVL 459


>gi|15897222|ref|NP_341827.1| histidyl-tRNA synthetase [Sulfolobus solfataricus P2]
 gi|284174467|ref|ZP_06388436.1| histidyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
 gi|32130140|sp|Q980L3|SYH_SULSO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|13813419|gb|AAK40617.1| Histidyl-tRNA synthetase (hisS) [Sulfolobus solfataricus P2]
 gi|261601888|gb|ACX91491.1| histidyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
          Length = 426

 Score = 76.7 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 62/416 (14%), Positives = 135/416 (32%), Gaps = 33/416 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
           +  + +  R+   + G  E+  P ++   L+   G  +   + M    D+ D+ +   P 
Sbjct: 21  IRYLESTFRDLAKKYGYSEIITPVVEEFKLFELKG-GEELRQTMYVFKDKADREISLRPE 79

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
               +   +  +++S       FY   +   DE  P++G  R  EF    A    +    
Sbjct: 80  ITPSVARAYIQNLQSSPKPIRLFYFGTVYRYDE--PQYGRYR--EFRQ--AGIEMIGDSS 133

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFM 228
                  + + Y         K I ++  +  I   +  ++ +  +  E  +    K+ +
Sbjct: 134 ILADVEVLDLLYNFYDKLNLSKDITIKINNIGIFRKIMDKYNIEDNLQEHVLHLIDKNKV 193

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV------------HNEKLFDSLPENKR 276
           D  +     +  +   ++ +    T   A   D+              +  F+ L    R
Sbjct: 194 DEALVILEKNIKNKDIMDFLNMILTKKEAKLEDIESLAELEEVSKLDIKNEFEYLLRLSR 253

Query: 277 VS---------ARGIEVGHIFYFGTKYS-LPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           +            G   G  +Y G  +  L  S  F  A G  +   +  YG      + 
Sbjct: 254 ILSSLNVKFKVDLGFVRGLAYYTGLIFEVLHPSVQFSIAGGGRYDKLIELYGGLPSPAIG 313

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
             I        I       P  + ++ I    +    A   +   L K    V  +   +
Sbjct: 314 FAIGVERTLLVIKDLKVEEPINVIVVGI---SEEAIPAMFTVSRMLRKEEYKVVINTKDQ 370

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +          GF L +I+G + +  + + +++ +T  +  + LE V++      
Sbjct: 371 PLSKLLPYYASQGFKLAIIIGKQELEKNMITVRNLITRKQISIPLENVLDAIKQTL 426


>gi|195327692|ref|XP_002030552.1| GM25502 [Drosophila sechellia]
 gi|194119495|gb|EDW41538.1| GM25502 [Drosophila sechellia]
          Length = 767

 Score = 76.7 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 76/276 (27%), Gaps = 22/276 (7%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                + + +              ++  +      E +  AD     +          + 
Sbjct: 456 IKPECLRFRQHMSNEMAHYACDCWDAEILTSYGWVECVGCADRSAYDLGQHTAATGVRLV 515

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--------------NKRVSA 279
           +E           S +         T     + + D+L +               +    
Sbjct: 516 AEKRLPAPKTVEVSEIVPNKQALGKTFKKEAKNITDALAKLSLEEITKVEEQLAGEGQYK 575

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
                G     G        +T K    ++    +     G  R++ +++E S   +   
Sbjct: 576 LTTADGQSHDLGKDTISVKHST-KTVHVEEFIPSVVEPSFGIGRIMYSLLEHSFQCRDGD 634

Query: 340 WPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                      +  IK      +++   +   +K+ + L+K       DD    IG ++A
Sbjct: 635 EQRCYFTLPPLVAPIKCSILPLSNNTDFQPYTQKLSSALTKAELSHKVDDSSGSIGRRYA 694

Query: 394 VADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIRED 428
             D +  P  + V    + +   V ++ R T  +  
Sbjct: 695 RTDEIAIPYGITVDFDTLKEPHTVTLRDRNTMKQVR 730



 Score = 42.0 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+ A+ R+        +E+    L   
Sbjct: 161 LLKRRFFYDQSFAIYGGITGQYDFGPMGCALKSNILALWRQYFALEEQMLEVDCSILTPE 220

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  + +   M++     + 
Sbjct: 221 PVLKASGHVERFADLMVKDVKTGEC 245


>gi|330504678|ref|YP_004381547.1| histidyl-tRNA synthetase [Pseudomonas mendocina NK-01]
 gi|328918964|gb|AEB59795.1| histidyl-tRNA synthetase [Pseudomonas mendocina NK-01]
          Length = 428

 Score = 76.7 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 50/421 (11%), Positives = 114/421 (27%), Gaps = 26/421 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP    A   + + +    +  G  E+ +P ++  +L+        D   KEM  
Sbjct: 10  GMNDILPEQTPAWRYLESTLVSLLDGYGYKEIRLPIVEYTELFARGIGEGTDVVDKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN++++   P            H  +        +     FR E +P+ G  R    
Sbjct: 70  FLDRNEESLTLRPEGTAGCVRAVLEHGLAGGGQVQKLWYAGPMFRYE-KPQKGRYRQFHQ 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS------HE 209
           +  +A++       ++       +             +     S               E
Sbjct: 129 VGVEAFNLPGPDVDAELIVLTWRLWKQLGLADAVTLQLNSLGSSEARAAYRDALVAYLQE 188

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDII----SLNSIVEQWTAPYAATSDVHNE 265
                D    +   +         +E T    +           E         + +   
Sbjct: 189 RFDQLDEDSQRRLTTNPLRILDSKNEATQALLVGAPTLGDYLDEESRLHFEGVKARLDAA 248

Query: 266 ----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               ++   L        R +        G + ++     + G   +         G   
Sbjct: 249 GIRYQINHKLVRGLDYYNRTVFEWVTDKLGAQGTVCAGGRYDGLVAQLGGKATPGVGFAM 308

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDV 379
                 ++  + +        +   +  +        +    A   +  RL        +
Sbjct: 309 GVERLVLLLETLELLPAELNRAADVYVCAFG------EAAELAALTLVERLRDELPRLRL 362

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYA 438
             +  G    SQF  AD  G    +I+G   ++   V  K  R    ++ ++ + +  + 
Sbjct: 363 LLNTGGGSFKSQFKKADKSGARYALILGDDELAARVVGCKPLRDDSEQQSVAWDALAEHL 422

Query: 439 S 439
           +
Sbjct: 423 A 423


>gi|74008962|ref|XP_854376.1| PREDICTED: similar to Histidyl-tRNA synthetase (Histidine--tRNA
           ligase) (HisRS) [Canis familiaris]
          Length = 618

 Score = 76.7 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 53/423 (12%), Positives = 122/423 (28%), Gaps = 33/423 (7%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           P G +          + V  +I     R GA     P  +  +    +G+Y    K +  
Sbjct: 79  PKGTRDYSPQQMAVREKVFDVIISCFKRHGAEITDTPVFELKETL--TGKYGEDSKLIYD 136

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +                +  +       ++  ++ + D      G  R  EF
Sbjct: 137 LKDQGGELLSLCYDLTVPFARYLAMNKLTNIKP---YHIAKVYWCDNPAMTRGQYR--EF 191

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                               +       I   L +    ++     I   +     V  +
Sbjct: 192 YQCYFDIAGQFDPMITD--AECLEIMSEILRSLQIGDFLVKVNDRHILDGIGQVGQVSWE 249

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
             + ++   K  +   +P    D+       S+VEQ            N++  + L + K
Sbjct: 250 EVKNEMVGEK-GLATKVPDHIGDYIQQHGGISLVEQL---LQDPELSQNKQALEGLGDLK 305

Query: 276 RVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            +        I     F        P+      A+G+   +       G       +   
Sbjct: 306 LLFEYLTLFSIADKISFDLSLAGEEPLGVGNVAAEGRYDGLVGMFDPKGCKVPCVGLSIG 365

Query: 332 SHDGKGIIWP-----DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV-FWDDMG 385
                 I+       +       + +   +  +   +   K+ + L   G          
Sbjct: 366 VERIFSIVEQRLEATEEKVRTTETQVLAASAQKKLLEERLKLVSELWNAGIKAELLYKKN 425

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++ +Q    +  G PL  I+G + + D  ++++   +    D+  E+++     R   +
Sbjct: 426 AKLQNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVASREEVDVPREDLVEEIKRR--TS 483

Query: 446 RPV 448
           +P+
Sbjct: 484 QPL 486


>gi|237807663|ref|YP_002892103.1| histidyl-tRNA synthetase [Tolumonas auensis DSM 9187]
 gi|259511491|sp|C4LC38|SYH_TOLAT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|237499924|gb|ACQ92517.1| histidyl-tRNA synthetase [Tolumonas auensis DSM 9187]
          Length = 425

 Score = 76.7 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 53/418 (12%), Positives = 113/418 (27%), Gaps = 28/418 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP        V A +R   +  G  E+ +P ++  +L+  + G   D   KEM    DRN
Sbjct: 15  LPEQTPVWQMVEATLRRVVSSYGYSEIRMPVVEMTNLFQRAIGEVTDVVEKEMYTFNDRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRSREFLM 157
             ++   P            H   Y      +Y     + +   + R R       E   
Sbjct: 75  GDSLTLRPEGTAGCVRACIEHGLVYNQERRLWYVGPMFRHERPQKGRYRQFHQFGVEVFG 134

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIF---HRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                 D           +            + LG  +         +     H+  +  
Sbjct: 135 LTGPDIDAELIMMTARLWRELGIAQFTTLQLNTLGSSAERAAYRDALVTFLEQHKESLDE 194

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           ++           +D   P          ++ +   E+  A ++    + +         
Sbjct: 195 ESQRRMYSNPLRVLDTKNPQVQEILQHAPTMADYFGEETKAHFSGLKALLDAAGIAYQVN 254

Query: 274 NKRVSARGIEVGHIFY-----FGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVA 326
            + V         +F       G + ++     + G              + +G  R+  
Sbjct: 255 ERLVRGLDYYNYTVFEWVTDSLGAQGTICGGGRYDGLVEQLGGQATPAIGFAMGLERLTL 314

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDDM 384
            +                       + I    +    A   +  +L        V     
Sbjct: 315 MLETLEQIRNIP---------STVDVYICMAGEGTLTAGLLLAEKLRSERPQLRVMTHCG 365

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHR 441
           G     Q   AD +   + +I+G   V++ KV +K  R    ++ + +  ++   +  
Sbjct: 366 GGNFKKQMKRADKVEARIALILGETEVAEQKVTVKFLRDQVEQQTVDVTALLPILAQL 423


>gi|94542963|gb|ABF33012.1| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94546851|gb|ABF36898.1| Histidyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
          Length = 438

 Score = 76.7 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 60/417 (14%), Positives = 119/417 (28%), Gaps = 29/417 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++ R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 25  LPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 84

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 85  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 141

Query: 159 DAYSFDL-TPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG            I       
Sbjct: 142 GVECFGAANPATDVETIAMAYHLLEKLGIKDVTLHLNSLGSPESRSAYRQTLIDYLTPMR 201

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    +   S+ + + E+  A + A   +      
Sbjct: 202 DQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVKAMLEALDI 261

Query: 269 DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +   V         IF F     G+  ++     +    G     +   +G G   
Sbjct: 262 PYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGL 321

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               +I             ++       + +            ++   + + G     D 
Sbjct: 322 ERLLMII-------EKQGLALPIETEMDVYLAVLGDGANSKALELVQAIRRQGFTAERDY 374

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+++   ++
Sbjct: 375 LGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQEVEVSFEDMMTNFAN 431


>gi|257871024|ref|ZP_05650677.1| histidyl-tRNA synthetase [Enterococcus gallinarum EG2]
 gi|257805188|gb|EEV34010.1| histidyl-tRNA synthetase [Enterococcus gallinarum EG2]
          Length = 437

 Score = 76.7 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 48/407 (11%), Positives = 118/407 (28%), Gaps = 13/407 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R         E+  P  +  ++   S     D   KEM    D+ ++ +   
Sbjct: 20  WQFVEETARLVFRDYQYNEIRTPIFEHFEVIARSVGDTTDIVSKEMYDFYDKGERHVTLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   +  +       N P+  + I   FR E   +  + +  +  ++   S + 
Sbjct: 80  PEGTAPIARSYVENKLFGPEYNKPYKVFYIGPMFRYERPQKGRLRQFHQIGVEAFGSANP 139

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             +    +    F   L +     + +     E+         +++   +  E      +
Sbjct: 140 ATDVETMAMAMDFFKQLGLSQLRLVINSLGDKETRKNYRQALIDYLSPHE-AELSEDSKR 198

Query: 226 DFMDFPIPSENTD--------FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
              + P+   ++          D    L+ +  +  A +     + +        ++  V
Sbjct: 199 RLHENPLRVLDSKDKRDQQFVADAPSILDYLSPEAKAHFETVITMLDALDIPYEIDSNMV 258

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                    IF   ++     +     A G+  ++     G        A+         
Sbjct: 259 RGLDYYTHTIFEIMSEAPKMGAQATICAGGRYDHLVEELGGPQTPGFGFAMGLERLLITM 318

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                 +         +    +       K+   +   G     D M  +  +QF  AD 
Sbjct: 319 EAEEVVIPALNELDAYVVGLGEATNLEALKVVQAIRNFGFSADRDFMNRKAKAQFKSADK 378

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            G  L + +G   +++  + IK   + I +   L ++ ++    +  
Sbjct: 379 QGARLVLTLGENELAEQVINIKSMASRIEKQFKLADLYDHFDEIYDE 425


>gi|323128235|gb|ADX25532.1| histidyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 426

 Score = 76.7 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 61/417 (14%), Positives = 121/417 (29%), Gaps = 29/417 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V  + R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 13  LPGDAAKWQYVEYVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 73  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 129

Query: 159 DAYSFDL-TPEGSKHSYNKMFVSYLR--------IFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +    +  + +          + LG            I       
Sbjct: 130 GVECFGAANPATDVETIAMAYHFFEKLGIKDVTLHLNSLGSPESRAAYRQALIDYLTPMR 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    +   S+ + + E+  A + A   +      
Sbjct: 190 DQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVKAMLEALDI 249

Query: 269 DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +   V         IF F     G+  ++     +    G     +   +G G   
Sbjct: 250 PYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               +I         I  +      +      +          ++   + + G     D 
Sbjct: 310 ERLLMIIEKQGITLPIETEMDVYLAVLGDGANSK-------ALELVQAIRRQGFTAERDY 362

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+++   ++
Sbjct: 363 LGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQELEVSFEDIMTNFAN 419


>gi|325912101|ref|ZP_08174499.1| histidine--tRNA ligase [Lactobacillus iners UPII 143-D]
 gi|325476051|gb|EGC79219.1| histidine--tRNA ligase [Lactobacillus iners UPII 143-D]
          Length = 428

 Score = 76.7 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 62/422 (14%), Positives = 125/422 (29%), Gaps = 19/422 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP      D V  I +    +    E+  P  ++ +++  S     D   KEM  
Sbjct: 8   GTVDILPDTSYQWDKVENIAKNFFRKANYQEIRTPMFENYEIFSRSSGESSDVVEKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ D+ +   P     +   +  +         P+  + I   FR E        R R
Sbjct: 68  FMDKGDRHIALRPEGTAGVVRAYVENKLYGPEYPKPYNVFYIASMFRYERPQAG---RQR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNK---------MFVSYLRIFHRLGLKSIPMRAESGPIGG 204
           EF      SF      +                   Y    + LG +++        +  
Sbjct: 125 EFHQIGVESFGSDNALADVETIVLAHDLLSTLGIKKYELHINSLGNEAVRTAYRQALVDY 184

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-YAATSDVH 263
               +  +  D+           +D     +     +   +   ++  +   +       
Sbjct: 185 FTPIKDKLSDDSQRRLKTNPLRILDSKDEEDIEFVSNAPRIRDYLDDESKKNFEFIIKTL 244

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYF-GTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           +E   D + ++  V       G IF F     SL  S T     G+ +++     G    
Sbjct: 245 SELKIDYVLDDDLVRGLDYYTGVIFEFMVEDTSLWQSKTTILGGGRYNHLVEEFDGPKTP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   + E             +         I    +       +I   L   G  + +D
Sbjct: 305 AVGFGIGEERLMLVLKAQNPELLTDSNIDFYITNIGEETITKTVEIARELRNQGLKIQYD 364

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
              +++ +QF  AD       + +G + + ++ + IK    G     +++E+ N  +   
Sbjct: 365 VEQKKLKAQFKKADKAKAKYVITLGVQEIEENTLNIKRLSDGKSYAFNMDEIAN-VNDLL 423

Query: 443 SN 444
             
Sbjct: 424 QK 425


>gi|162139093|ref|YP_599515.2| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
          Length = 426

 Score = 76.7 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 62/422 (14%), Positives = 119/422 (28%), Gaps = 32/422 (7%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++ R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 13  LPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 73  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 129

Query: 159 DAYSFDL-TPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG            I       
Sbjct: 130 GVECFGAANPATDVETIAMAYHLFEKLGIKDVTLHLNSLGSPESRSAYRQALIDYLTPMR 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    +   S+ + + E+  A + A   +      
Sbjct: 190 DQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVKAMLEALDI 249

Query: 269 DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +   V         IF F     G+  ++     +    G     +   +G G   
Sbjct: 250 PYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               +I         I  +      +      +          ++   + + G     D 
Sbjct: 310 ERLLMIIEKQGITLPIETEMDIYLAVLGDGANSK-------ALELVQAIRRQGFTAERDY 362

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI---NYASH 440
           +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+++      S 
Sbjct: 363 LGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQELEVSFEDMMTNFENISE 422

Query: 441 RF 442
           + 
Sbjct: 423 QL 424


>gi|319956693|ref|YP_004167956.1| histidyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
 gi|319419097|gb|ADV46207.1| histidyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
          Length = 405

 Score = 76.7 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 58/384 (15%), Positives = 121/384 (31%), Gaps = 20/384 (5%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
              G   +  P L+   L+  S     D  GKEM +  D+    +   P     +   + 
Sbjct: 31  RNYGFDFIETPILEETRLFKRSVGESSDIVGKEMYQFTDKGGNDVCLRPEGTAGVVRAYI 90

Query: 120 SHIKSYRNLP-FTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
                 +      F+     FR E   +  + +  +F ++   + ++  + +        
Sbjct: 91  QAKLDRQQGRKDRFFYYGPMFRYERPQKGRLRQFHQFGVESFGTAEVEEDFTLIMMLSEI 150

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
              L I +++ + S+   A   P    L      +A+  E    C +     PI   +  
Sbjct: 151 FDALGIGYKVKINSLGCSACMPPYRNTLVGFLEGIAE--ELCPDCQRRITTNPIRVLDCK 208

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSARGIEV--GHIFYF 290
            ++  +L     + +       D   ++L   L       E      RG++   G  F F
Sbjct: 209 NENCQNLLESAPKLSESLCEKCDRDFKRLQKLLDTSGIDYEVDTHLVRGLDYYSGTAFEF 268

Query: 291 GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
            +      SA      G+   +     G     +  A+          +  +  + +   
Sbjct: 269 VSDEIGAQSA--IAGGGRYDRLVEFLEGKPTPGIGFAIGIERIMELVKMPEEERSGWY-- 324

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
              + A D    DA   +  +L + G     +   + + +    AD  G     ++G   
Sbjct: 325 ---LGAMDAESLDAILSLGQKLRRKGEKAVVEYAPKGLKAHLKGADRAGAKYCAVIGENE 381

Query: 411 VSDSKVEIKHRLTGIREDMSLEEV 434
             D  V +K   +   + + LE +
Sbjct: 382 RKDGTVWVKDLASKEEKTVLLESL 405


>gi|223934048|ref|ZP_03626000.1| seryl-tRNA synthetase [Streptococcus suis 89/1591]
 gi|223897275|gb|EEF63684.1| seryl-tRNA synthetase [Streptococcus suis 89/1591]
          Length = 424

 Score = 76.7 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E    G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKNLGARLERALYNFMLDEHIAEGYQEIITPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R+ I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DTNFVLIPTAEVPLTNYYRNEILEEKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +           +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFATPEQSYDELEKMT-ANAENILQKLGLPYRVLALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNAYREISSCSNTEDFQARRAQIRYRDAA 371


>gi|253752458|ref|YP_003025599.1| seryl-tRNA synthetase [Streptococcus suis SC84]
 gi|253754284|ref|YP_003027425.1| seryl-tRNA synthetase [Streptococcus suis P1/7]
 gi|56684577|gb|AAW21989.1| SerS [Streptococcus suis]
 gi|251816747|emb|CAZ52389.1| seryl-tRNA synthetase [Streptococcus suis SC84]
 gi|251820530|emb|CAR47285.1| seryl-tRNA synthetase [Streptococcus suis P1/7]
 gi|319758862|gb|ADV70804.1| hypothetical protein SSUJS14_1746 [Streptococcus suis JS14]
          Length = 424

 Score = 76.7 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E    G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKNLGARLERALYNFMLDEHIAEGYQEIITPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R+ I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DTNFVLIPTAEVPLTNYYRNEILEEKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +           +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFATPEQSYDELEKMT-ANAENILQKLGLPYRVLALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNAYREISSCSNTEDFQARRAQIRYRDAA 371


>gi|38233946|ref|NP_939713.1| histidyl-tRNA synthetase [Corynebacterium diphtheriae NCTC 13129]
 gi|46396579|sp|P60914|SYH_CORDI RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|38200207|emb|CAE49888.1| histidyl-tRNA synthetase [Corynebacterium diphtheriae]
          Length = 423

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 56/396 (14%), Positives = 114/396 (28%), Gaps = 29/396 (7%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   + +P  +   L+        D   KEM   ADR D+++   P     +      H
Sbjct: 40  AGYEHIELPIFEDTTLFARGVGESTDVVTKEMYTFADRGDRSVTLRPEGTAGVMRAVIEH 99

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                 LP         FR E        R R+       +  +           +    
Sbjct: 100 NLDRGQLPVKLNYYGPFFRYERPQAG---RYRQLQQVGVEAIGVDDPALDAEVIALADRS 156

Query: 182 LRIFHRLGLKSIPMRAESG---PIGGDLSHEFIVLADTGET-----QVFCSKDFMDFPIP 233
           L++    G +            P   +   EF+      E      ++   +   D    
Sbjct: 157 LKVIGLTGYRLELTSLGDHTCRPQYREKLQEFLFKLPLDEETRHRAEINPLRVLDDKRPE 216

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY---- 289
            +    D  + L+++ +     +   + + ++     +   + V          F     
Sbjct: 217 IQEMTVDAPLMLDNLSDSSREHFELVTGMLDDLNVAYVVNPRMVRGLDYYTKTTFEFVHD 276

Query: 290 -FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             G +  +     + G             GIG    V   + +    +  +   S     
Sbjct: 277 GLGAQSGIGGGGRYDGLM--AQLGGQELSGIGYALGVDRCLLALEAEQKRVTDGSRVNVF 334

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIV 406
              +   A  ++ R     I   L   G      + D G + G+    AD  G    +++
Sbjct: 335 GVAMGSAAKREMVR-----IIDALRSAGISADMAYGDRGLK-GAM-KGADRAGARFALVL 387

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G + + ++ V +K      + D+SL+ +I       
Sbjct: 388 GDRELENNCVAVKDLAQQGQRDVSLDNLILEIQSAL 423


>gi|21911351|ref|NP_665619.1| histidyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28896725|ref|NP_803075.1| histidyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
 gi|32130114|sp|Q8K5I9|SYH_STRP3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|21905567|gb|AAM80422.1| putative histidyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28811979|dbj|BAC64908.1| putative histidine-tRNA ligase [Streptococcus pyogenes SSI-1]
          Length = 426

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 60/417 (14%), Positives = 119/417 (28%), Gaps = 29/417 (6%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++ R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 13  LPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 72

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 73  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 129

Query: 159 DAYSFDL-TPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG            I       
Sbjct: 130 GVECFGAANPATDVETIAMAYHLFEKLGIKDVTLHLNSLGSPESRSAYRQALIDYLTPMR 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    +   S+ + + E+  A + A   +      
Sbjct: 190 DQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVKAMLEALDI 249

Query: 269 DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +   V         IF F     G+  ++     +    G     +   +G G   
Sbjct: 250 PYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGL 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               ++         I  +      +      +          ++   + + G     D 
Sbjct: 310 ERLLMVIEKQGITLPIETEMDVYLAVLGDGANSK-------ALELVQAIRRQGFTAERDY 362

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+++   ++
Sbjct: 363 LGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQEVEVSFEDMMTNFAN 419


>gi|113474598|ref|YP_720659.1| histidyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
 gi|110165646|gb|ABG50186.1| histidyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
          Length = 467

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLG 399
           +S AP   +++ +    +        +  +L + G +V   +D  G  +G Q   AD   
Sbjct: 362 ESFAPTPATVMVVNMQ-ESLMATYLDVSQKLRRSGMNVITSFDGRG--VGKQLQQADKQK 418

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            P  +I+GS+  + +   +K   TG +  + +  + +    R SN
Sbjct: 419 IPFCIIIGSEEAAANMCSLKDLRTGEQMKVPIGSLADVLKQRLSN 463



 Score = 41.6 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 19/48 (39%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           G   +LP  ++    +   IR+   R G   +  P ++  ++    G
Sbjct: 13 SGFPEFLPGEKRLESYLMDTIRQVFERYGFTPIETPAVERLEVLQAKG 60


>gi|289626152|ref|ZP_06459106.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649058|ref|ZP_06480401.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           2250]
          Length = 419

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 61/421 (14%), Positives = 129/421 (30%), Gaps = 34/421 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP       +    +    +  G  ++ +P ++  +L+  S G   D   KEM   ADRN
Sbjct: 5   LPEQTPLWRHFEGTVSRLLDNYGYRQIRMPIVEFTELFKRSIGEVTDIVEKEMYTFADRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P            H  +        + I   FR E   +    R R+F     
Sbjct: 65  GDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQFHQIGV 121

Query: 161 YSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---GPIGGDLSHEFIVLADT 216
             F+L  P+         +  +  +  R  +K       +        D   EF+  A  
Sbjct: 122 EVFNLDGPDIDAELIVMTWRLWGMLGIRNAVKLELNSLGTSEARARYRDALVEFL-SARL 180

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE----------- 265
            +      +     P+   +T   +  ++     +        S VH E           
Sbjct: 181 DQLDEDSQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRVHFEGLKARLDAAGI 240

Query: 266 --KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L       ++ +        G + ++     + G   +         G+G   
Sbjct: 241 PYVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGLVEQMGGKPTT--GVGFAM 298

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  ++        +    +           +A +       EK+  +L  +   V    
Sbjct: 299 GIERLVLLLETLGQVPEEIARQVDVYLCAFGEAAELAALALTEKVRDQLPSLRLQV---- 354

Query: 384 MGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYAS 439
                G   SQF  AD  G    +I+G + ++   + +K  R  G +++++ + +  + +
Sbjct: 355 -NAGAGSFKSQFKKADKSGALYALILGEEELAAKVIGVKPLRGQGEQQNIAWDALSEHLA 413

Query: 440 H 440
            
Sbjct: 414 S 414


>gi|303391262|ref|XP_003073861.1| glycyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506]
 gi|303303009|gb|ADM12501.1| glycyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506]
          Length = 579

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 88/308 (28%), Gaps = 13/308 (4%)

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                G    R  L       D      +    +    Y +      + +     E   I
Sbjct: 272 CNETIGYYIGRTALFLIEVGIDKELLRFRQHKKEEMAHYAKDCWDAEIYTSYGWIECVGI 331

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                ++     D  +  + C +   +   P E  ++   +       +    ++   ++
Sbjct: 332 ADRSCYDLKCHEDGSKVDLRCKRRLTN---PKEVEEWILKLDKKEWGARLRDRFSTLIEM 388

Query: 263 HN-------EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
            N       EK   +L  NK       +   I     + S      F      D      
Sbjct: 389 INGFSQEYIEKNISALDGNKNYLNVEFDGHGI---NVECSKEKKKIFVENVIPDVIEPSF 445

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
             G     ++        D + ++    +       I    +     +   KI   L++ 
Sbjct: 446 GIGRILYALLEHSFYQREDLRPVLKLKPMIAPIQCAIGYLIYYNEFEEHILKIKRSLAEN 505

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V  ++    IG +++  D LG P  +     F+ DS V I+ R T  +  + +E+  
Sbjct: 506 GLVVHVNERSCSIGRKYSSYDELGVPFFITFDPDFLKDSMVTIRERDTMNQIRVDVEKCP 565

Query: 436 NYASHRFS 443
           +       
Sbjct: 566 SIILEYIR 573



 Score = 47.4 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESG 84
           + ++  I+    G+Y   P G     N+ A+ R+        +E+   T+   D+   SG
Sbjct: 19  LAQSAHIYGGISGLYDLGPPGLSIKTNILALWRKHFVLEEDMLEIETTTMLPYDVLKASG 78

Query: 85  RYDSYGKEMLRLADRNDK 102
             D +   ++      D 
Sbjct: 79  HVDKFCDILVFDEVTGDC 96


>gi|253756218|ref|YP_003029358.1| seryl-tRNA synthetase [Streptococcus suis BM407]
 gi|251818682|emb|CAZ56517.1| seryl-tRNA synthetase [Streptococcus suis BM407]
          Length = 424

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E    G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKNLGARLERALYNFMLDEHIAEGYQEIITPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R+ I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DTNFVLIPTAEVPLTNYYRNEILEEKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +           +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFATPEQSYDELEKMT-ANAENILQKLGLPYRVLALCTGDMGYSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNAYREISSCSNTEDFQARRAQIRYRDAA 371


>gi|320322920|gb|EFW79010.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320329957|gb|EFW85945.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 419

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 61/421 (14%), Positives = 129/421 (30%), Gaps = 34/421 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP       +    +    +  G  ++ +P ++  +L+  S G   D   KEM   ADRN
Sbjct: 5   LPEQTPLWRHFEGTVSRLLDNYGYRQIRMPIVEFTELFKRSIGEVTDIVEKEMYTFADRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P            H  +        + I   FR E   +    R R+F     
Sbjct: 65  GDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQFHQIGV 121

Query: 161 YSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---GPIGGDLSHEFIVLADT 216
             F+L  P+         +  +  +  R  +K       +        D   EF+  A  
Sbjct: 122 EVFNLDGPDIDAELIVMTWRLWGMLGIRNAVKLELNSLGTSEARARYRDALVEFL-SARL 180

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE----------- 265
            +      +     P+   +T   +  ++     +        S VH E           
Sbjct: 181 DQLDEDNQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRVHFEGLKARLDAAGI 240

Query: 266 --KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L       ++ +        G + ++     + G   +         G+G   
Sbjct: 241 PYVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGLVEQMGGKPTT--GVGFAM 298

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  ++        +    +           +A +       EK+  +L  +   V    
Sbjct: 299 GIERLVLLLETLGQVPEEIARQVDVYLCAFGEAAELAALALTEKVRDQLPSLRLQV---- 354

Query: 384 MGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYAS 439
                G   SQF  AD  G    +I+G + ++   + +K  R  G +++++ + +  + +
Sbjct: 355 -NAGAGSFKSQFKKADKSGALYALILGEEELAAKVIGVKPLRGQGEQQNIAWDALSEHLA 413

Query: 440 H 440
            
Sbjct: 414 S 414


>gi|170017024|ref|YP_001727943.1| histidyl-tRNA synthetase [Leuconostoc citreum KM20]
 gi|169803881|gb|ACA82499.1| Histidyl-tRNA synthetase [Leuconostoc citreum KM20]
          Length = 434

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 61/422 (14%), Positives = 115/422 (27%), Gaps = 19/422 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G    LP       ++ +I R         E+  P  ++ D++  S     D   KEM  
Sbjct: 11  GTADLLPEQTAQWQHIESIARLLFGDYNFREIRTPLFENFDVFSRSAGDTSDVVTKEMYD 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDELRPRFGVMRSR 153
             D+ ++ +   P     +   +  +         P+  + I   FR E        R R
Sbjct: 71  FHDKGNRHIALRPEGTAGVVRAYVENKLYGPEFDKPYKAFYIGPMFRYERPQAG---RFR 127

Query: 154 EFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEF 210
           +F      +F  T P             +  +  +    +I    +  S          +
Sbjct: 128 QFHQIGVEAFGATAPALDVEIIAMAVDFFQTLGLKNLKVAINTLGDQASREAYRKALIAY 187

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           +      E            P+   ++                   +  S  H + + + 
Sbjct: 188 LKPH-FDELSPDSQARLEKNPLRVLDSKDPRDQVFVEDAPSILDFLSDDSSQHWQTVQEL 246

Query: 271 LP------ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           L       E      RG++     IF   T       A      G+   +     G    
Sbjct: 247 LTALDITFEVDSTMVRGLDYYNDTIFEIMTVDDSLKGAATIAGGGRYSGLVAEFGGPETP 306

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V   +              +          +            +I   +   G     D
Sbjct: 307 GVGFGIGVERLISLLATQGVAPVKDDGLDFYVVNIGTSTNVVATQIVQAIRSFGYVAERD 366

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +G    SQF  AD       V VG   +++  V IK+  TG+++ + L ++        
Sbjct: 367 YLGRSAKSQFKSADRHHSRYVVTVGETELANHVVNIKNMATGMQQTVKLADLYTDLPTII 426

Query: 443 SN 444
            +
Sbjct: 427 DS 428


>gi|18313224|ref|NP_559891.1| glycyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
 gi|18160741|gb|AAL64073.1| glycyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
          Length = 586

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 78/204 (38%), Gaps = 7/204 (3%)

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI-EVGHIFYFGTKYSLPMS 299
           +++ L          Y        + + +          RG+ EV    Y  ++  + + 
Sbjct: 364 EVVRLYPNPNAIRERYGDKIGEVIKAIKEHEGRVIEAFNRGMSEVALGEYVISRDMVYIK 423

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIE----SSHDGKGIIWPDSVAPFKISLINIK 355
              +  D +     +     G  R++  V+E           +  P  +AP K  ++ I 
Sbjct: 424 LEKRKTDLEKFIPHVVEPSFGLDRIMYVVLESAVVEEEGRVYLRLPPDIAPVKACILPIV 483

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                  +    ++  L++ G  V ++D G  IGS++A  D +G PL V +  K   D  
Sbjct: 484 KRADYV-EIGRTLWRSLARQGFVVLYEDEG-TIGSRYASCDEIGTPLAVTIDEKTPVDGT 541

Query: 416 VEIKHRLTGIREDMSLEEVINYAS 439
           V I+ R T  +  + L +V+ + S
Sbjct: 542 VTIRDRDTKRQVRVKLGDVVTFVS 565



 Score = 56.7 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 9/111 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAI----EMSVPTLQSADLWVESGRYDSYGKEM 93
           G Y + PLG +   N+    R+            E+  P +    ++  SG  D +   +
Sbjct: 29  GFYDYGPLGVQLRRNIVEKWRKVFV-LPYQDLIIEVETPIIMPEPVFKASGHLDHFTDYL 87

Query: 94  LRLADRNDKAMIYGPTHEEVMT---DIFRSHIKSYRNLPFTFYQIQLKFRD 141
           +       +        EE +        +   S  +L     + ++    
Sbjct: 88  VTCTKC-GRKYRADHLVEEELAKRGLKISTEGMSASDLERLISEHKIVCPH 137


>gi|157413737|ref|YP_001484603.1| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
 gi|166987315|sp|A8G5Y6|SYS_PROM2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|157388312|gb|ABV51017.1| Seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
          Length = 425

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 75/194 (38%), Gaps = 12/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +   + +   + G +E+  P L +++    SG+   +  E  + +   +  +
Sbjct: 172 NGARLERALINFMLDMHTKNGYLELMPPALVNSESLKGSGQLPKFSNESFKCS---NDDL 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T   R+ +   + LP  +      FR E     +   G++R  +F   + 
Sbjct: 229 WLSPTAEVPLTAFHRNELIDPKQLPIKYVAYSPCFRREAGSYGKDTKGLIRLHQFNKVEL 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF----IVLADT 216
           Y F   P  S  ++ K+      IF +L L    +   +G +G   S  F     + +  
Sbjct: 289 YWFC-DPTKSLEAHKKITSDAENIFKKLNLPYRIVDICTGDLGFSSSRTFDLEVWLPSSK 347

Query: 217 GETQVFCSKDFMDF 230
              ++    + +DF
Sbjct: 348 CYREISSCSNCLDF 361


>gi|195590378|ref|XP_002084923.1| GD14521 [Drosophila simulans]
 gi|194196932|gb|EDX10508.1| GD14521 [Drosophila simulans]
          Length = 767

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 75/276 (27%), Gaps = 22/276 (7%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                + + +              ++  +      E +  AD     +          + 
Sbjct: 456 IKPECLRFRQHMSNEMAHYACDCWDAEILTSYGWVECVGCADRSAYDLGQHTAATGVRLV 515

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--------------NKRVSA 279
           +E           S +         T     + + D+L +                    
Sbjct: 516 AEKRLPAPKTVEVSEIVPNNQALGKTFKKEAKNITDALAKLSLEEITKVEEQLAGDGQYK 575

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
                G     G        +T K    ++    +     G  R++ +++E S   +   
Sbjct: 576 LTTADGQSHDLGKDTISVKHST-KTVHVEEFIPSVVEPSFGIGRIMYSLLEHSFQCRDGD 634

Query: 340 WPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                      +  IK      +++   +   +K+ + L+K       DD    IG ++A
Sbjct: 635 EQRCYFTLPPLVAPIKCSILPLSNNTDFQPYTQKLSSALTKAELSHKVDDSSGSIGRRYA 694

Query: 394 VADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIRED 428
             D +  P  + V    + +   V ++ R T  +  
Sbjct: 695 RTDEIAIPYGITVDFDTLKEPHTVTLRDRNTMKQVR 730



 Score = 42.0 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+ A+ R+        +E+    L   
Sbjct: 161 LLKRRFFYDQSFAIYGGITGQYDFGPMGCALKSNILALWRQYFALEEQMLEVDCSILTPE 220

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  + +   M++     + 
Sbjct: 221 PVLKASGHVERFADLMVKDVKTGEC 245


>gi|171686592|ref|XP_001908237.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943257|emb|CAP68910.1| unnamed protein product [Podospora anserina S mat+]
          Length = 310

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 34/81 (41%)

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           D    + ARL  +G     D     IG ++A  D LG PL + +    V D  V ++ R 
Sbjct: 210 DEARALSARLHSLGISNIADSSSASIGKRYARNDELGTPLGITINFDTVKDGSVTLRDRD 269

Query: 423 TGIREDMSLEEVINYASHRFS 443
           +  +   S + V+    +  +
Sbjct: 270 STSQVRASEDGVVQAIKNMVN 290


>gi|119873110|ref|YP_931117.1| histidyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
 gi|166228603|sp|A1RUZ2|SYH_PYRIL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|119674518|gb|ABL88774.1| histidyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
          Length = 421

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 50/419 (11%), Positives = 113/419 (26%), Gaps = 23/419 (5%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSY 89
            + +  +G+  WLP    AL ++   + +     G   +  P ++  + L  ++G+    
Sbjct: 7   YLRRPPRGMRDWLPPQFYALRHMEETLSKVAEAFGYRRVETPVVEHFEVLAKKAGQ--EV 64

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD-------- 141
             E+    D+  + +         +  +   ++   R + + ++    ++ +        
Sbjct: 65  VNEIYYFKDKAGRDLGLRFDMTVPIARVISYNLSLPRPIRWYYFTKVFRYDEPQHGRYRE 124

Query: 142 ------ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
                 EL          E L     + D     S            ++  RLG+ +   
Sbjct: 125 FYQFGIELIGSASPRADAEVLQVFTQALDAVGARSYIVKINDRRVVDKLLERLGVSAYRD 184

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                           V+    E  V        + I  E +  + +  +  +     + 
Sbjct: 185 VIYRALDKKLKLSREEVIKLMAEGGVSLDTAERIYDIAEEMSIEEAVNVITKLDSGLGSF 244

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y          +            RG++      F        +  +K A G        
Sbjct: 245 YNKLLKYLEAAVSLDKFRFDMSIVRGLDYYTGMVF-----EAFAGEYKLAVGGGGRYDDL 299

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
                 +++ A       +              +    I   D         I  RL   
Sbjct: 300 LELYSGVKMPALGFAIGVERLMEAVGLEGVEKPLDYY-IYIFDDDAYPYAVAIAKRLRSA 358

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V  +   + +   F     +G    +I+G K +    V+I+        +    E 
Sbjct: 359 GYSVVVELGEKNLKEVFEYILKIGTRYLIIIGKKELEKGVVKIRDLQRREEFEKPFSEF 417


>gi|88812662|ref|ZP_01127909.1| Histidyl-tRNA synthetase, class IIa [Nitrococcus mobilis Nb-231]
 gi|88790078|gb|EAR21198.1| Histidyl-tRNA synthetase, class IIa [Nitrococcus mobilis Nb-231]
          Length = 424

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 67/420 (15%), Positives = 122/420 (29%), Gaps = 42/420 (10%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIY 106
               V   + E  +  G  E+ +P ++   L+  + G   D   KEM    DRN +++  
Sbjct: 21  VWRFVETTVCEILDSYGYEEIRLPVVEKTALFARAIGEVTDIVEKEMYTFEDRNGESLTL 80

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P            H   ++  P  +Y   + FR E   +    R R+F    A  F + 
Sbjct: 81  RPEGTAGCVRACIQHGLLHKGQPRVWYGGAM-FRYERPQKG---RYRQFHQIGAEVFGVP 136

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--LSHEFIVLADTGETQVFCS 224
                     M    LR    LGL  + ++  S  I        E +V       +    
Sbjct: 137 GPDIDAEMILMTGRMLRS---LGLLDLQLQINSLGIPASRAEYRERLVSYFRRHHEQLDE 193

Query: 225 KDFMDFPIPSENT-------DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS------- 270
           +                       I +  SI+E   A   A  +     L  +       
Sbjct: 194 EAQRRLHTNPLRILDSKSLAMQPLIAAAPSILEHLDATSQAHIEQITAILDTAGIAYTLN 253

Query: 271 --LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVA 326
             L        R +        G + ++     + G              +  G  R+V 
Sbjct: 254 PRLVRGLDYYTRTVFEWTSERLGAQGAVCAGGRYDGLVEQIGGPPTPAIGFAAGIERLVT 313

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDM 384
                                   L+ +    +       ++  RL        +  +  
Sbjct: 314 LTAA-------AECVPPEPALHAYLVVVG---EEAVAPAYRLVERLRDHLPRVRLRVNSG 363

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASHRFS 443
           G    SQF  AD  G    +I  ++ ++ ++V +K  R    +  +S  E+I   +   +
Sbjct: 364 GGSFKSQFKRADRSGARYALIFAAEELATARVSVKDLRERTDQRRLSEAELIELLAECIA 423


>gi|21357965|ref|NP_648746.1| Glycyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|15291137|gb|AAK92837.1| GH09263p [Drosophila melanogaster]
 gi|23093449|gb|AAF49668.2| Glycyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|220945008|gb|ACL85047.1| Aats-gly-PA [synthetic construct]
 gi|220954840|gb|ACL89963.1| Aats-gly-PA [synthetic construct]
          Length = 679

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 75/276 (27%), Gaps = 22/276 (7%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                + + +              ++  +      E +  AD     +          + 
Sbjct: 368 IKPECLRFRQHMSNEMAHYACDCWDAEILTSYGWVECVGCADRSAYDLGQHTAATGVRLV 427

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--------------NKRVSA 279
           +E           S +         T     + + D+L +                    
Sbjct: 428 AEKRLPAPKTVEVSEIVPNKQALGKTFKKEAKNITDALAKLSLEEITKVEEQLAGDGQYK 487

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
                G     G        +T K    ++    +     G  R++ +++E S   +   
Sbjct: 488 LTTADGQSHDLGKDTISVKHST-KTVHVEEFIPSVVEPSFGIGRIMYSLLEHSFQCRDGD 546

Query: 340 WPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                      +  IK      +++   +   +K+ + L+K       DD    IG ++A
Sbjct: 547 EQRCYFTLPPLVAPIKCSILPLSNNTDFQPYTQKLSSALTKAELSHKVDDSSGSIGRRYA 606

Query: 394 VADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIRED 428
             D +  P  + V    + +   V ++ R T  +  
Sbjct: 607 RTDEIAIPYGITVDFDTLKEPHTVTLRDRNTMKQVR 642



 Score = 42.0 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+ A+ R+        +E+    L   
Sbjct: 73  LLKRRFFYDQSFAIYGGITGQYDFGPMGCALKSNILALWRQYFALEEQMLEVDCSILTPE 132

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  + +   M++     + 
Sbjct: 133 PVLKASGHVERFADLMVKDVKTGEC 157


>gi|24664462|ref|NP_730022.1| Glycyl-tRNA synthetase, isoform B [Drosophila melanogaster]
 gi|23093448|gb|AAN11786.1| Glycyl-tRNA synthetase, isoform B [Drosophila melanogaster]
          Length = 765

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 75/276 (27%), Gaps = 22/276 (7%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
                + + +              ++  +      E +  AD     +          + 
Sbjct: 454 IKPECLRFRQHMSNEMAHYACDCWDAEILTSYGWVECVGCADRSAYDLGQHTAATGVRLV 513

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--------------NKRVSA 279
           +E           S +         T     + + D+L +                    
Sbjct: 514 AEKRLPAPKTVEVSEIVPNKQALGKTFKKEAKNITDALAKLSLEEITKVEEQLAGDGQYK 573

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
                G     G        +T K    ++    +     G  R++ +++E S   +   
Sbjct: 574 LTTADGQSHDLGKDTISVKHST-KTVHVEEFIPSVVEPSFGIGRIMYSLLEHSFQCRDGD 632

Query: 340 WPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                      +  IK      +++   +   +K+ + L+K       DD    IG ++A
Sbjct: 633 EQRCYFTLPPLVAPIKCSILPLSNNTDFQPYTQKLSSALTKAELSHKVDDSSGSIGRRYA 692

Query: 394 VADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIRED 428
             D +  P  + V    + +   V ++ R T  +  
Sbjct: 693 RTDEIAIPYGITVDFDTLKEPHTVTLRDRNTMKQVR 728



 Score = 42.0 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+ A+ R+        +E+    L   
Sbjct: 159 LLKRRFFYDQSFAIYGGITGQYDFGPMGCALKSNILALWRQYFALEEQMLEVDCSILTPE 218

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  + +   M++     + 
Sbjct: 219 PVLKASGHVERFADLMVKDVKTGEC 243


>gi|260072545|gb|ACX30445.1| histidyl-tRNA synthetase [uncultured SUP05 cluster bacterium]
          Length = 424

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/424 (15%), Positives = 126/424 (29%), Gaps = 34/424 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKE 92
           G+   LP       +V  II       G   +  P ++  D +       +   D   KE
Sbjct: 10  GMNDLLPKDSSLWLSVERIISNLFISYGFKNIRTPIVEKTDTFCRAIGEAT---DIVEKE 66

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGV 149
           M    + N +++   P            H      +   FY     + +   + R R   
Sbjct: 67  MYSWKESNGESLSLRPEGTAGCVRAMIEHNLPREGIQKVFYQGAMFRHERPQKGRYRQFH 126

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               E    D    D       H+  +             L S   RA    +  D   +
Sbjct: 127 QVGVEVFGADNAKIDAELMAMTHALWQSLGLKNLTLQINTLGSSEARANYKSVLVDYFTK 186

Query: 210 FIVLADTGETQVFCSKDF--MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-- 265
                D    +   +     +D          +    L + ++  ++ +      + E  
Sbjct: 187 NKDQLDEDSLRRLSTNPLRILDSKNKDMQGLINRAPKLMNYLDDESSQHFDEFKNYLEYL 246

Query: 266 ----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               ++   L        R +        G + ++     + G        +MG     A
Sbjct: 247 NIPYQINTRLVRGLDYYNRTVFEWTTNDLGAQGTICAGGRYDG-----LVEKMGGKPTPA 301

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVF 380
           +     +       +      S +P  I L+ +    Q         + A L      + 
Sbjct: 302 VGFAIGLERLVLLLEEQKISLSGSPLSIYLMALGDKAQLKSMQIAHDLRASLPGA---IL 358

Query: 381 WDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVIN 436
           ++D    +G   SQF  AD       +I+G + +S++++ +K       ++ MSL+E IN
Sbjct: 359 YND--ITLGSFKSQFKKADKADADYALILGEEELSNNQISVKPLKGQSSQQTMSLDEAIN 416

Query: 437 YASH 440
           Y   
Sbjct: 417 YFKD 420


>gi|94544923|gb|ABF34971.1| Histidyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
          Length = 438

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 62/422 (14%), Positives = 119/422 (28%), Gaps = 32/422 (7%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRN 100
           LP        V ++ R+  ++    E+  P  +  ++   S     D   KEM    D+ 
Sbjct: 25  LPGDAAKWQYVESVARDTFSQYNYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKG 84

Query: 101 DKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           D+ +   P     +   +  +         P   Y I   FR E        R REF   
Sbjct: 85  DRHITLRPEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQI 141

Query: 159 DAYSFDL-TPEGSKHSYNKM--------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               F    P     +                    + LG            I       
Sbjct: 142 GVECFGAANPATDVETIAMAYHLFEKLGIKDVTLHLNSLGSPESRSAYRQALIDYLTPMR 201

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLF 268
             +  D+           +D     +    +   S+ + + E+  A + A   +      
Sbjct: 202 DQLSKDSQRRLDENPLRVLDSKEKEDKLAVEKAPSILDYLDEESQAHFEAVKAMLEALDI 261

Query: 269 DSLPENKRVSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             + +   V         IF F     G+  ++     +    G     +   +G G   
Sbjct: 262 PYVIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGL 321

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
               +I         I  +      +      +          ++   + + G     D 
Sbjct: 322 ERLLMIIEKQGITLPIETEMDIYLAVLGDGANSK-------ALELVQAIRRQGFTAERDY 374

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI---NYASH 440
           +G +I +QF  AD     L + +G   V   K  IK+  +    ++S E+++      S 
Sbjct: 375 LGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQELEVSFEDMMTNFENISE 434

Query: 441 RF 442
           + 
Sbjct: 435 QL 436


>gi|327481752|gb|AEA85062.1| histidyl-tRNA synthetase [Pseudomonas stutzeri DSM 4166]
          Length = 429

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 63/444 (14%), Positives = 113/444 (25%), Gaps = 64/444 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP        + +   +  +  G  E+ +P L+  DL+        D   KEM  
Sbjct: 10  GMNDILPAQTPTWRYLESTFAQLLDSYGYSEIRLPILEFTDLFARGIGEGTDVVDKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN++++   P            H  +        +     FR E   +    R R+F
Sbjct: 70  FLDRNEESLTLRPEGTAGCVRAVLEHGMTGGGQVQKLWYTGPMFRYEKPQKG---RYRQF 126

Query: 156 LMKDAYSFDLTPEGSKH---------------------------------SYNKMFVSYL 182
                  F+                                          Y    V+YL
Sbjct: 127 HQIGVEVFNQPGPDIDAELIVLTARLWKQLGLADAVTLQLNSLGSSEARARYRDALVAYL 186

Query: 183 RIFHRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +       +    R  + P  I    + +   L     T      +             D
Sbjct: 187 QQRFEQLDEDSQRRLTTNPLRILDSKNAQTQALLTDAPTLHDYLDEESRAHFEGLKARLD 246

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     I  +             E + D L     V A G   G +  FG K +  +  
Sbjct: 247 AVGIAYEINPKLVRGLDYYGRTVFEWVTDKLGAQGTVCAGGRYDGLVSQFGGKPTPGVGF 306

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                        +G           A I +  +   +                      
Sbjct: 307 AMGVERLVLLLETLGLVPETLNPTPHAYICAFGEAAELAALALAE--------------- 351

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK- 419
                 ++   L   G  +  +  G    SQF  AD  G    +I+G   ++   V  K 
Sbjct: 352 ------RLRDELP--GLRLLVNAGGGSFKSQFKKADKSGARYALILGDDELAGRVVGCKP 403

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R    ++ ++ + +    +    
Sbjct: 404 LRDDSEQQSIAWDALPERLAACLE 427


>gi|71654830|ref|XP_816027.1| glycyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70881127|gb|EAN94176.1| glycyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 129

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
                   E+I   +   G     DD G  IG ++A  D LG P  V    +   D  V 
Sbjct: 25  KPELLRVVEEIRGDMVLRGISTRTDDSGASIGKKYARVDELGIPFCVTCDFET--DGCVT 82

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
           ++ R +  +  +  E V +  +     +RP+
Sbjct: 83  LRERDSARQVRIPRETVADVVAEL---SRPL 110


>gi|228915931|ref|ZP_04079506.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843749|gb|EEM88823.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 426

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/431 (15%), Positives = 133/431 (30%), Gaps = 49/431 (11%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 12  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 71

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 72  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 126

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   L ++    +      ++  I  +L+ + I+ 
Sbjct: 127 VDIVGVESVMAEAELMSMAFELFQTLNLELTIQYNNRKLLNGILQAINIPTELTSDVILS 186

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT    +  ++    E +  P  A      
Sbjct: 187 LDKIEKIGIDGVRKDVLERGISKEMADTICNTVLSCLKLTIADFKEAFNNPLVADGVNEL 246

Query: 265 EKLFDSLP----------ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           ++L   L                    +  G ++    K SL  S+   G+ G+   +  
Sbjct: 247 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDSLITSS--IGSGGRYDNIIG 304

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
              G         +          +           +  I    ++    C +I  +L  
Sbjct: 305 AFRGDNMNYPTVGISFGLDVIYTALAQKETVSSTADVFIIPLGTELQ---CLQIAQQLRS 361

Query: 375 ---VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              +  ++         G +   A    +    P  +I+G + +S + V +++   G   
Sbjct: 362 TTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTNTVMLRNMKEGSEV 415

Query: 428 DMSLEEVINYA 438
            + +  + NY 
Sbjct: 416 KVPISSLSNYL 426


>gi|297182854|gb|ADI19005.1| histidyl-tRNA synthetase [uncultured alpha proteobacterium
           HF0070_05I22]
          Length = 417

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 62/405 (15%), Positives = 125/405 (30%), Gaps = 21/405 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLR 95
           G    LP        V    R    R G  EM+ P L+ ++++        D   KE   
Sbjct: 9   GTADLLPDLMAQHRLVIDTARNATARYGFQEMATPILEFSEVFSRPLGNSSDIVTKENYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  + +   P +   +     S   + ++LP  ++     FR E   +    R R+F
Sbjct: 69  FVDRGGEQLTLRPENTAGVVRAMISGGLT-QSLPLKYFYAGPMFRYERPQKG---RMRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRI----FHRLGLKSIPMRAESGPIGGDLSHEFI 211
                         +          +L       H +   +    AES          F+
Sbjct: 125 HQVGIEYLGPNDALADAEVISAGARFLAELGVLPHCVLHLNSLGDAESRAAYRAALVGFL 184

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              ++  +     +     P+   ++       +     +      A S  H + L  +L
Sbjct: 185 QTHESALSDD-SKRRLAVNPLRILDSKEAGDRDILQTAPKLQDYLNAASKAHFQTLTTAL 243

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFK-GADGKDHYVQMGSYGIGAMRVV----A 326
                 +            G  Y    +  F   A G    V  G    G   ++     
Sbjct: 244 ----DAAGVTWVFDPFLVRGLDYYCHTAFEFVTDALGTQGTVLAGGRYDGLAEMLGGPAV 299

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A    +   + +      A      + + + D     A  ++  +L   G D+ +   G 
Sbjct: 300 AGTGWAAGIERLAMLAGDAAIAAPQVAMLSTDPETDLAAFQLAEKLRDTGIDIEFPTAGA 359

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            IG +   A      L +I+G   ++ + ++++   TG + ++++
Sbjct: 360 -IGKKLKKAARSNIRLAIILGGDELAKNTLQLRDLTTGTQAEIAM 403


>gi|254525907|ref|ZP_05137959.1| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
 gi|221537331|gb|EEE39784.1| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
          Length = 425

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 74/194 (38%), Gaps = 12/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +   + +   + G +E+  P L +++    SG+   +  E  + +   +  +
Sbjct: 172 NGARLERALINFMLDMHTKNGYLELMPPALVNSESLKGSGQLPKFSNESFKCS---NDDL 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T   R+ +   + LP  +      FR E     +   G++R  +F   + 
Sbjct: 229 WLSPTAEVPLTAFHRNELIDPKQLPIKYVAYSPCFRREAGSYGKDTKGLIRLHQFNKVEL 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF----IVLADT 216
           Y F   P  S  ++ K+      I  +L L    +   +G +G   S  F     + +  
Sbjct: 289 YWFC-DPTKSLEAHKKITSDAENILKKLNLPYRLVDICTGDLGFSSSRTFDLEVWLPSSK 347

Query: 217 GETQVFCSKDFMDF 230
              ++    + +DF
Sbjct: 348 CYREISSCSNCLDF 361


>gi|256824814|ref|YP_003148774.1| histidyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
 gi|256688207|gb|ACV06009.1| histidyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
          Length = 481

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 72/477 (15%), Positives = 132/477 (27%), Gaps = 68/477 (14%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW------------- 80
           + ++G    LP  Q A + +  +IR      G + +  P  +  D+              
Sbjct: 9   RPAQGTLELLPRQQIAFNRMTDVIRRHFEAGGFLPLETPAFERTDVLLTKSGGETEKQVY 68

Query: 81  --VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI-----------FRSHIKSYRN 127
               +G   +Y   +L  AD            E +               F +  +    
Sbjct: 69  FVQSTGGLANYRDAVLAAADGQGGESAPPDGAEALPDLALRFDLTVPMARFVAQHEGQLT 128

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF---------DLTPEGSKHSYNKMF 178
            PF  YQ+Q  +R E   R    R REFL  D             D  P  + H+  +  
Sbjct: 129 FPFRRYQMQRVYRGERPQRG---RYREFLQCDVDIIGSGSLNVRHDAEPPATMHAIFREL 185

Query: 179 VS----YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                       RL          +      +  E   +   G   +        F +P+
Sbjct: 186 DFGPFTIHLNNRRLLRGFFRSLGIADDAQPAVLREVDKIDKRGLDWLREELTGERFGLPA 245

Query: 235 ENTD----------------FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV- 277
           +  +                 + +  L     +  A  A   +V        +PE+    
Sbjct: 246 DAVEALAEFVGRRTTSHADAMEALAGLEGRDAELDAGVAELREVLEMLRHLGVPESDYCV 305

Query: 278 ---SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV--QMGSYGIGAMRVVAAVIESS 332
               ARG++      + T            + G+   +  Q     +  + +   +    
Sbjct: 306 NFAIARGLDYYTGTVYETFLDEHPELGSICSGGRYENLAGQYTKSSLPGVGMSIGLSRLF 365

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                    D        LI +   D+        + A L   G  V       ++  QF
Sbjct: 366 WQLMENGLVDDEPSTVQVLIPLL--DEALLPEALGLAAELRSAGLAVENVLEPAKLAKQF 423

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
             AD  G     ++G++ V    V +K      +  +   E+        +  +P L
Sbjct: 424 KHADRAGIRFVAVLGAQEVEKGVVTVKDLARSDQFAVERGELARALRVELA--QPEL 478


>gi|257487197|ref|ZP_05641238.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 419

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/421 (14%), Positives = 129/421 (30%), Gaps = 34/421 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP       +    +    +  G  ++ +P ++  +L+  S G   D   KEM   ADRN
Sbjct: 5   LPEQTPLWRHFEGTVSRLLDNYGYRQIRMPIVEFTELFKRSIGEVTDIVEKEMYTFADRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P            H  +        + I   FR E   +    R R+F     
Sbjct: 65  GDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQFHQIGV 121

Query: 161 YSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---GPIGGDLSHEFIVLADT 216
             F+L  P+         +  +  +  R  +K       +        D   EF+  A  
Sbjct: 122 EVFNLDGPDIDAELIVMTWRLWGMLGIRNAVKLELNSLGTSEARARYRDALVEFL-SARL 180

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE----------- 265
            +      +     P+   +T   +  ++     +        S VH E           
Sbjct: 181 DQLDEDSQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRVHFEGLKARLDAAGI 240

Query: 266 --KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
              +   L       ++ +        G + ++     + G   +         G+G   
Sbjct: 241 PYVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGLVEQMGGKPTT--GVGFAM 298

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  ++        +    +           +A +       E++  +L  +   V    
Sbjct: 299 GIERLVLLLETLGQVPEEIARQVDVYLCAFGEAAELAALALTEQVRDQLPSLRLQV---- 354

Query: 384 MGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYAS 439
                G   SQF  AD  G    +I+G + ++   + +K  R  G +++++ + +  + +
Sbjct: 355 -NAGAGSFKSQFKKADKSGALYALILGEEELAKKVIGVKPLRGQGEQQNIAWDALSEHLA 413

Query: 440 H 440
            
Sbjct: 414 S 414


>gi|150389940|ref|YP_001319989.1| histidyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
 gi|149949802|gb|ABR48330.1| histidyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 436

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 68/436 (15%), Positives = 135/436 (30%), Gaps = 46/436 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW--VESGRYDSYGKEMLRLAD 98
            + P  Q   + +   ++E     G   +  PTL   ++     +G  +   KE   L D
Sbjct: 13  DFFPNEQIIRNGIIKKLQEVFELYGYQPLETPTLYYLEVLASKYAGGAE-ILKETYSLKD 71

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMK 158
           + ++ +                 +     +PF  Y+I   FR        + R REF+  
Sbjct: 72  QGERELGLRYDLTIPF--SKVIGMNPNLRMPFKRYEIGKVFR---DGPVKLGRMREFIQC 126

Query: 159 DAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESG-----PIGGDLSHEFIV 212
           D     +    ++          + ++   + L     +  SG      I  +L+ + I+
Sbjct: 127 DVDVVGVKSMMAEAELMFMATEVFDKLGLDIYLSYNNRKLLSGTLMKLKINKELASDVIL 186

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA---------TSDVH 263
             D  E                +    ++II L +  E  +  Y                
Sbjct: 187 SLDKVEKIGIEGVKKELLEKNLQPEVVENIIELLNNKEAASIDYYKGIASNSLMQEGIQE 246

Query: 264 NEKLFDSLP----------ENKRVSARGIEVGHIFYFGTKY-----SLPMSATFKGADGK 308
            E+L D L                    I  G ++    K      S+     +    GK
Sbjct: 247 LEELNDYLDAMGIGSKVKYNPFLARGLEIYTGTVYEIFLKDGSITSSMGAGGRYDDIIGK 306

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
               ++G   +G       +             +  +   + +I +    +  + ACE  
Sbjct: 307 FIQNEVGYPAVGI---SFGLDVIYTALSMKRDNELESNLDVYIIPLGTEAEALKMACE-- 361

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
              L   G  V  D    ++  +   A+    P  +I+G   V   ++++K   +G  E+
Sbjct: 362 ---LRGQGIKVDIDMTERKLKKRLDYANKEKIPYVLILGEDEVKSQRIKMKDMKSGTEEE 418

Query: 429 MSLEEVINYASHRFSN 444
           M + E+ N    R  +
Sbjct: 419 MKISEIGNNVLRRIQS 434


>gi|139438301|ref|ZP_01771854.1| Hypothetical protein COLAER_00843 [Collinsella aerofaciens ATCC
           25986]
 gi|133776498|gb|EBA40318.1| Hypothetical protein COLAER_00843 [Collinsella aerofaciens ATCC
           25986]
          Length = 437

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/425 (14%), Positives = 113/425 (26%), Gaps = 33/425 (7%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW------------VE-----SG-RYDS 88
            +A   +  I        G   +  P ++  D++             E     SG   + 
Sbjct: 17  MRAWQKMQQIAAGVFEPFGFKPIETPAIEQVDVFVHGIGQSTDVVRKEMFRVFSGANLER 76

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
              E      +  + +   P     +      +    +                 RP+ G
Sbjct: 77  VFTEGTDTKLKPKQRLALRPEGTAGVVRAVVENNLVPQGSTPFKAYYAEAMFRGERPQKG 136

Query: 149 VMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGL----KSIPMRAESGPIG 203
            +R  +F            P         +   Y R+   L       +    A+  P  
Sbjct: 137 RLR--QFHQVGIEWLGAPDPAADAECIIMLMEFYKRLGFDLSKLRLLINSMGDAQCRPAY 194

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
            +   +FI+     E    C +     P+ + +   D    + +               H
Sbjct: 195 REQVKQFILNH-ADEMCDECRERAELNPLRAFDCKNDHCREIMAEAPLMGDNLCDECREH 253

Query: 264 NEKLFDSLPE------NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            E++   L              RG++      F  +       +  G    D  V++   
Sbjct: 254 YEQVKRYLDAAGIEYVEDPTLVRGLDYYTRTVFEVEAPGAGVGSIGGGGRYDGLVELEGG 313

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
              A    A   E +         D  A     +    A  +  R     I   L   G 
Sbjct: 314 KPTAGVGFAVGFERALLALQAFGNDLGADEAPCVYVANAGKE-LRQNVFAITQELRAAGI 372

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
               D  G  + +QF  AD +G  L +++G   ++  KV+++   +       L  V   
Sbjct: 373 VTEADYQGRSLKAQFKQADKVGAKLILVLGGDELAVGKVKVRDMESHEEVLADLANVAEA 432

Query: 438 ASHRF 442
              R 
Sbjct: 433 VRERL 437


>gi|269468503|gb|EEZ80161.1| histidyl-tRNA synthetase [uncultured SUP05 cluster bacterium]
          Length = 424

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/424 (15%), Positives = 125/424 (29%), Gaps = 34/424 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKE 92
           G+   LP       +V  II       G   +  P ++  D +       +   D   KE
Sbjct: 10  GMNDLLPKDSSLWLSVERIISNLFISYGFKNIRTPIVEKTDTFCRAIGEAT---DIVEKE 66

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGV 149
           M    + N +++   P            H      +   FY     + +   + R R   
Sbjct: 67  MYSWKESNGESLSLRPEGTAGCVRAMIEHNLPREGIQKVFYQGAMFRHERPQKGRYRQFH 126

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
               E    D    D       H+  +             L S   RA    +  D   +
Sbjct: 127 QVGVEVFGADNAKIDAELMAMTHALWQSLGLKNLTLQVNTLGSSEARANYRSVLVDYFTK 186

Query: 210 FIVLADTGETQVFCSKDF--MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-- 265
                D    +   +     +D          +    L   ++  ++ +      + E  
Sbjct: 187 SKDQLDEDSLRRLSTNPLRILDSKNKDMQGLINRAPKLMDYLDDESSQHFDEFKNYLEYL 246

Query: 266 ----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
               ++   L        R +        G + ++     + G        +MG     A
Sbjct: 247 NIPYQINTRLVRGLDYYNRTVFEWTTNDLGAQGTICAGGRYDG-----LVEKMGGKPTPA 301

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCDVF 380
           +     +       +      S +P  I L+ +    Q         + A L      + 
Sbjct: 302 VGFAIGLERLVLLLEEQKISLSGSPLSIYLMALGDKAQLKSMQIAHDLRASLPGA---IL 358

Query: 381 WDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMSLEEVIN 436
           ++D    +G   SQF  AD       +I+G + +S++++ +K       ++ MSL+E IN
Sbjct: 359 YND--ITLGSFKSQFKKADKADADYALILGEEELSNNQISVKPLKGQSSQQTMSLDEAIN 416

Query: 437 YASH 440
           Y   
Sbjct: 417 YFKD 420


>gi|169835972|ref|ZP_02869160.1| histidyl-tRNA synthetase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 441

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/432 (12%), Positives = 125/432 (28%), Gaps = 24/432 (5%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESG--------RYD 87
            G   +LP  Q   + +  I+R      G   +  P L+ ++ L  +SG        R+ 
Sbjct: 10  SGFPEYLPAEQIEFNRLVNIVRRVYEEYGFSPIDTPDLELSEVLLTKSGGETEQQIYRFI 69

Query: 88  SYGKEMLRLADRNDK--AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
               ++    D        +     E +         K +R       + +  ++ ++  
Sbjct: 70  KGSNDLTMRFDLTVPLARYVAQHESELIFPFRRYHIGKVHRGERAQAGRFREFYQCDIDV 129

Query: 146 RFGVMRSREFLM--------KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
                 + +  M        +     + T   +       F   L + +        +  
Sbjct: 130 IGSNSVAVDAEMPIVINKIFEQFDIGEFTVHINNRKILNGFFESLGLSNISKDVLRIVDK 189

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                    + E   L  + +      +            +  + ISLN   +Q+     
Sbjct: 190 IDKISANSFTEELERLGLSADQITRLREFININGSKDVILNKLEKISLNCKSDQFKQGVK 249

Query: 258 ATSDVHNEKLFDSLPENK----RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
               V        L +++       ARG++      + T  +         + G+   + 
Sbjct: 250 EVGLVVKTIRDFGLSDSRFMIDLRIARGLDYYTGTVYETTLNNHPEIGSICSGGRYDNLA 309

Query: 314 MG-SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
              +        V+  +         I    +  F  + + +         A  +I  RL
Sbjct: 310 SHYTKKYLPGVGVSIGLSRLFYKLCEIGAIELTRFSSAEVVVMPIGSGQITASVRIAERL 369

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G +         +  +   AD +GF   V++G   +   +V +K+ LTG    +   
Sbjct: 370 RSTGINTMLYTEENNMRKKLKYADKMGFEWVVLIGEDELLTEEVMLKNMLTGESIRIKSV 429

Query: 433 EVINYASHRFSN 444
           E+ ++   +   
Sbjct: 430 ELDSFLLDKIKK 441


>gi|260166733|gb|ACX32978.1| RE19272p [Drosophila melanogaster]
          Length = 765

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 52/162 (32%), Gaps = 8/162 (4%)

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                      G     G        +T K    ++    +     G  R++ +++E S 
Sbjct: 568 GDGQYKLTTADGQSHDLGKDTISVKHST-KTVHVEEFIPSVVEPSFGIGRIMYSLLEHSF 626

Query: 334 DGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
             +              +  IK      +++   +   +K+ + L+K       DD    
Sbjct: 627 QCRDGDEQRCYFTLPPLVAPIKCSILPLSNNTDFQPYTQKLSSALTKAELSHKVDDSSGS 686

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIRED 428
           IG ++A  D +  P  + V    + +   V ++ R T  +  
Sbjct: 687 IGRRYARTDEIAIPYGITVDFDTLKEPHTVTLRDRNTMKQVR 728



 Score = 42.0 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+ A+ R+        +E+    L   
Sbjct: 159 LLKRRFFYDQSFAIYGGITGQYDFGPMGCALKSNILALWRQYFALEEQMLEVDCSILTPE 218

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  + +   M++     + 
Sbjct: 219 PVLKASGHVERFADLMVKDVKTGEC 243


>gi|328713386|ref|XP_003245057.1| PREDICTED: glycyl-tRNA synthetase-like [Acyrthosiphon pisum]
          Length = 284

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
           YS  +       +  +    +G      +     + E       +  P  VAP K  ++ 
Sbjct: 113 YSKTIHVEEIVPNVIEPSFGIGRIIYTLLEHTFKIREKDEQRTYLSLPPLVAPLKCCVLP 172

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV-S 412
           +  +D+        +   L   G     DD    +G ++A  D +  P  + V    +  
Sbjct: 173 LLDNDKFTPLVSM-LSKSLCLKGVSNKIDDSSGSVGRRYARTDEIAVPYCITVDFDSLVE 231

Query: 413 DSKVEIKHRLTGIREDMSLEEVINYA 438
              V I+ R +  +  + + +V++  
Sbjct: 232 PQSVTIRERDSMEQIRVPVSDVVDLV 257


>gi|330975906|gb|EGH75972.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 429

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/442 (14%), Positives = 116/442 (26%), Gaps = 66/442 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP       +    +    +  G  ++ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRHFEGTVARLLDNYGYRQIRMPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN  ++   P            H  +        + I   FR E   +    R R+F
Sbjct: 70  FADRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQF 126

Query: 156 LMKDAYSFDLTPEGSK---------------------------------HSYNKMFVSYL 182
                  F+L                                         Y    V YL
Sbjct: 127 HQIGVEVFNLDGPDIDAELIVMTWRLWGLLGIRNAVKLELNSLGTSEARARYRDALVEYL 186

Query: 183 RIFHRLGLKSIPMRAESGPIG--GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                   +    R ++ P+        E   +            D          T  D
Sbjct: 187 SARLDQLDEDSQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRVHFEGLKTRLD 246

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  I  +        S    E + D L     V A G   G +   G K +  +  
Sbjct: 247 AAGIPYVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGLVEQMGGKPTAGVGF 306

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                        +        R V   + +  +   +         +  L  +      
Sbjct: 307 AMGIERLVLLLETLEQVPEEIARQVDVYLCAFGEAAELAALALTEKVRDQLPTL------ 360

Query: 361 CRDACEKIYARLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                     RL    G             SQF  AD  G    +I+G + ++   + +K
Sbjct: 361 ----------RLQVNAG--------AGSFKSQFKKADKSGALYALILGEEELAAKVIGVK 402

Query: 420 -HRLTGIREDMSLEEVINYASH 440
             R  G +++++ + +  + + 
Sbjct: 403 PLRGQGEQQNIAWDALSEHLAS 424


>gi|307109063|gb|EFN57302.1| hypothetical protein CHLNCDRAFT_34933 [Chlorella variabilis]
          Length = 290

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 5/155 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G Y   P      D +           G      P   + D L  E    + +  E+  
Sbjct: 84  SGCYILRPYSFAIWDEIKNWFDARIKELGVQNAYFPLFITEDVLMTEKEHVEGFAPEVAW 143

Query: 96  LA----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +        ++ +   PT E VM   +   I+S+R+LP    Q     R E +     +R
Sbjct: 144 VTRSGSSELERPIAIRPTSETVMYPYYAQWIRSHRDLPLRLNQWTNVVRWEFKHPTPFIR 203

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           SREFL ++ ++   T E +     ++   Y R++ 
Sbjct: 204 SREFLWQEGHTCFATKEEADTEVYQILDLYRRVYE 238


>gi|322792871|gb|EFZ16704.1| hypothetical protein SINV_11422 [Solenopsis invicta]
          Length = 741

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/380 (9%), Positives = 98/380 (25%), Gaps = 27/380 (7%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  E+   +             E       ++H K       +        + + +    
Sbjct: 337 FRNEISPRSGLIRVREFTMAEIEHFCDPNDKNHPKFETVKDISMLLYSACNQMDGKSAQH 396

Query: 149 VMRSREFL-------MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           +                  +   +     K   +   + + +              ++  
Sbjct: 397 LTIGEAVSSGLVANETLGYFMARIHQFLLKVGIDSNRLRFRQHMSNEMAHYACDCWDAEC 456

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
           +      E +  AD     +          + +E             +         T  
Sbjct: 457 LTSYGWIECVGCADRSAYDLTQHTKATGVKLVAEKKLPAPKTVDVCEIVLNKVLIGKTFK 516

Query: 262 VHNEKLFD---SLPENKRVSARGI-EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG-- 315
             ++ + D   +L E++ VS   I             ++ +  T    + K +   +   
Sbjct: 517 KDSKAVQDTLTALGEDEIVSLEKILSENESHELTLPSNVVVKITKDMMEVKRYQKTVHVE 576

Query: 316 -------SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCR 362
                      G  R++ A+ E +   +      +       +  +K      + +    
Sbjct: 577 EIIPSVIEPSFGIGRIMYALFEHNFKAREGDEKRTYFALPPVVAPLKCSVLPLSGNDEFV 636

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHR 421
               K+   L++       DD    IG ++A  D +  P  + +    +       ++ R
Sbjct: 637 SFVRKLSQDLTRADVSHKVDDSSGSIGRRYARTDEIAIPFGITIDFDTLKTPHSATLRDR 696

Query: 422 LTGIREDMSLEEVINYASHR 441
            +  +  ++L+E+       
Sbjct: 697 DSMGQVRINLDELPGVVRDL 716



 Score = 42.4 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 17/90 (18%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIR------EEQNRTGAIEMSVP 72
           L+ R   + Q         G Y + P+G     N+    R      E+      +E+   
Sbjct: 134 LLKRRFFLDQSFAIYGGITGQYDFGPMGCSLKTNLINAWRNFFVLEEQM-----LEVDCS 188

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDK 102
            L    +   SG  + +   M++     + 
Sbjct: 189 ILTPEPVLKASGHVERFADLMVKDVKTGEC 218


>gi|187736593|ref|YP_001878705.1| seryl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
 gi|238691874|sp|B2UPP6|SYS_AKKM8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|187426645|gb|ACD05924.1| seryl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
          Length = 426

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 80/251 (31%), Gaps = 23/251 (9%)

Query: 13  ENPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTG 65
           ENP+D    +  L    GMI           G   +   G +    +   +   Q    G
Sbjct: 135 ENPKDHVELAANL----GMISFEDGARITGSGFVVYRGAGARLERALINFLLNTQTVENG 190

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
             E+ VP +   +    +G+   + ++M    D+    M   PT E  +T+++R  I   
Sbjct: 191 YQEVGVPFVVKRECMEGTGQLPKFEEDMYGTEDQQ---MFLIPTAEVPVTNLYRDTILQE 247

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
            +LP         FR E     R   G++R  +F   +        +  +     +    
Sbjct: 248 SDLPIKMAAYTPCFRREAGSAGRINRGMIRVHQFDKVELVQILKPEDSFREL-EVLRSHA 306

Query: 182 LRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             I  +LGL    +   +G +G         E          +V     F D+       
Sbjct: 307 ESILQKLGLHYRVIELCTGDLGFSSAKTYDIEVWAPGQGQYLEVSSCSCFTDYQARRMRL 366

Query: 238 DFDDIISLNSI 248
            + D    N  
Sbjct: 367 RYKDADGKNQF 377


>gi|284991589|ref|YP_003410143.1| histidyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
 gi|284064834|gb|ADB75772.1| histidyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
          Length = 420

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/395 (16%), Positives = 117/395 (29%), Gaps = 27/395 (6%)

Query: 61  QNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
             R G   +  P  +  +++        D   KEM    DR  +++   P     +   F
Sbjct: 32  LRRAGYGYVETPVFEHTEVFSRGVGESTDVVTKEMYTFDDRGGRSLTLRPELTAGLMRAF 91

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             H      LP   + +   FR E        R R F   D  +  +           + 
Sbjct: 92  IEHRLHTGALPVKLWTVGSAFRYERPQAG---RYRHFTQVDMEALGVDDPALDAEVVALG 148

Query: 179 VSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLA--------DTGETQVFCSKDFM 228
           V   + F  LGL    +   S           E +V          +T           +
Sbjct: 149 V---QGFRDLGLTDFELLLTSLGDATCRPQYREQLVTYLDKLDLDEETRRRAAINPLRVL 205

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GH 286
           D   P      DD   +   +   T  +      H   L  +  E  R+  RG++     
Sbjct: 206 DDKRPEVQAQLDDAPLMVDHLSDSTRAHYDAVRQHLTDLGVTWTEAPRL-VRGLDYYTKT 264

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            F F        SA   G  G+   +     G     +  AV               V  
Sbjct: 265 TFEFVHHGLGAQSA--IGGGGRYDGLSAALGGPDVSGIGYAVGVDRTLLAVQAEGLDVGT 322

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQV 404
                  +    +  +    ++  +L + G   D  +   G + G+    AD  G    V
Sbjct: 323 ATGVQAFVVPLGEEAKRLAVRLVGQLREAGVSADTVYGGRGLK-GAM-KAADRSGASHVV 380

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           ++G + +++   ++K   TG +  + + E+ +   
Sbjct: 381 VIGERDLAEGVGQLKDMRTGEQRPVPVGELFDAVR 415


>gi|311894853|dbj|BAJ27261.1| putative histidyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 425

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 61/424 (14%), Positives = 118/424 (27%), Gaps = 34/424 (8%)

Query: 38  GIYSWLPLG----QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           G Y  LP          + ++A  R    R G   +  P  +   L+        D   K
Sbjct: 14  GTYDLLPPESATFLAIRERLSAPAR----RAGYGYIETPVFEDVKLFSRGVGESTDIVTK 69

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVM 150
           EM  L  +    +   P     +           + NLP   +     +R E   +    
Sbjct: 70  EMYNLTTKGGDELALRPEGTASVLRAALQANLHKQGNLPVKLWYSGSYYRYERAQKG--- 126

Query: 151 RSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLS 207
           R R+F    A       P            ++  +  R     +    +    P      
Sbjct: 127 RYRQFAQVGAEAIGAEDPALDAELIILADDAFRSLGLRDYRLLLNSLGDQRCRPAYRAAL 186

Query: 208 HEFIVLADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
             F+   D  E      ++   +   D     +    D     + + E+  A  A   ++
Sbjct: 187 VAFLAGLDLDEETRRRAEINPLRVLDDKRESVQAQLGDAPKLRDHLCEECKAYDAKVREL 246

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                   + + K V          F F        SA   G  G+   +     G    
Sbjct: 247 LTANGVAFVDDPKLVRGLDYYTRTTFEFVHDGLGAQSA--IGGGGRYDGLSEMIGGPALP 304

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V  A+              ++     + + + A  +  ++        L + G      
Sbjct: 305 SVGWALGVDRSYLALEAEGVALDLPAATSVYVVALGEEAKNVLFAKVVELRRAGVATDL- 363

Query: 383 DMGEQIGSQ-----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
                 G +        AD  G    +I G + +++  V++K   TG +  ++L  ++  
Sbjct: 364 ----AFGVKSIKNAMKSADRSGARFALIAGDRDLAEGVVQLKDLTTGEQTPVALAALVTT 419

Query: 438 ASHR 441
              +
Sbjct: 420 LKEK 423


>gi|302524212|ref|ZP_07276554.1| histidyl-tRNA synthetase [Streptomyces sp. AA4]
 gi|302433107|gb|EFL04923.1| histidyl-tRNA synthetase [Streptomyces sp. AA4]
          Length = 407

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/385 (13%), Positives = 113/385 (29%), Gaps = 20/385 (5%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           +   R G +    P L+ A+++  +SG+ +   +++  L  R  + +   P     +  +
Sbjct: 9   DVLERYGYLRYDGPILEQAEVYERKSGQ-EIADQQLYTLTTRGGERLALRPEMTPSVARM 67

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              H KS  + P  +Y      R E   R  V    +       S     E         
Sbjct: 68  IAGHAKS-LSFPVRWYSHPNCHRYERPQRGRVREHWQINADIFGSESANCEIEMFELIHD 126

Query: 178 FVSYLRIFHRLGLKSIPMRA-------ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
            +  +     +    +  R        +   I  D   +   L D  E            
Sbjct: 127 LMGAVGATPDMFAVRVNDRNLLSSALTDVVGISPDHLPQVFALVDRWEKTSAEEHAASAA 186

Query: 231 PIPSENTDFDDIISLNSIVEQW--TAPYAATSDVHNEKLFDS----LPENKRVSARGIEV 284
            I   +  ++ +              P A  ++ +  K+  S    L   + +  RG+  
Sbjct: 187 EIGLSDKQYEKLAEALGAGPALLDELPEAVKAESNLVKVLSSSAASLVRYEPLIVRGLAY 246

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                F    + P +       G+   +           +   + + +          + 
Sbjct: 247 YTSTVFEVFDTSPQNRRALFGGGRYSNLASMFTKEQISGIGFGMGDVTLMDFLDTHGLTP 306

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPL 402
            P     + +    +   D    +   L K G       +    ++G +   AD  G   
Sbjct: 307 QPRSEVDVTVIPVTEELADPARDVATALRKAGLRTSTPLELR--KLGKELTRADKAGAIA 364

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIRE 427
            VIVG +  +  +V ++   T  ++
Sbjct: 365 VVIVGEEDWAAGRVTVRSLATREQQ 389


>gi|290999699|ref|XP_002682417.1| predicted protein [Naegleria gruberi]
 gi|284096044|gb|EFC49673.1| predicted protein [Naegleria gruberi]
          Length = 664

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/373 (13%), Positives = 104/373 (27%), Gaps = 32/373 (8%)

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           ++R  D  +         E            S  N+    + +  K     R        
Sbjct: 167 LVRFDDYEEPEWNESSQVEVDSIMEEVKETNSLFNVNAFQHVMDPKLFSLSRGYIYEDYE 226

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL------ 206
            +F   +  +  L P      +  +                  +     +  +       
Sbjct: 227 MKF---NYPNVYLKPNSEWAIFPYLKNIIRSYIQLPYKVICKTKNFQQVMSDEGIQLPLF 283

Query: 207 -------SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                   HE     ++ E  +    D M   +        ++ +L + +     P+ A 
Sbjct: 284 YGNKEQYQHEIHTCHESEENALSYMNDIMWNRV--YLPVLLNVCNLWNGISYHLFPWKAF 341

Query: 260 SDVHNEKLFD---SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
           S      +FD            AR    G IF      S   +  ++            +
Sbjct: 342 SHCKQAIVFDVSLPFVNTSVNIARTNYYGRIF------SDVYNIVYRLKQDNFTSPIFQT 395

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY---ARLS 373
            G  + R++ A   S  D KG+    ++  ++I ++ + +         E +     +L 
Sbjct: 396 CGNISSRILGACAASCSDDKGLRLHSTMNKYQIVIVPMLSKSCDTNILYENVRSMEKKLK 455

Query: 374 KVGCDVFWDDMGEQIGS-QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             G  V  D         +F   +  G  L V +G + +  S + IK R +  +  +   
Sbjct: 456 SFGFRVHADMRYATKNVEKFYQWESKGVSLVVSIGKQELEGSTITIKGRNSLKKSTIPAN 515

Query: 433 EV-INYASHRFSN 444
           EV     S     
Sbjct: 516 EVNFEMISSLLDK 528


>gi|225425272|ref|XP_002267943.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 667

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 81/279 (29%), Gaps = 30/279 (10%)

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--LSHEFIVLADTGE 218
                  +         +     +       +  +RA S   G D     +F    +  +
Sbjct: 371 EMAHYAADCWDAEIECSYGWIECVGIAD-RSAYDLRAHSEKSGVDLVAHEKFSEPREVEK 429

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
             +   K  +            +  +L ++ E+      AT +   E  F+     K V+
Sbjct: 430 LVIATVKKELGLAFRGNQKMVVE--ALEAMDEKEALEMKATLESKGEAEFNVCTLGKNVT 487

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +            K  + +S   K    +     +     G  R++  + E     +  
Sbjct: 488 IK------------KNMVTISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLFEQCFYTRPS 535

Query: 339 IWPDSV---APFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              D       F   +  IK        D+      + I   L+  G     D  G  IG
Sbjct: 536 KAGDEQLNVFAFPPLVAPIKCSVFPLIQDKKYDAVAKLISKSLTVAGISHKIDISGATIG 595

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ++A  D LG P  + V     S S V I+ R +  +  
Sbjct: 596 KRYARTDELGIPFAITVD----STSSVTIRERDSKDQIR 630



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYD 87
           +  I++   G+Y + P G     NV A  R+        +E+  P +    +   SG  D
Sbjct: 71  SFKIYRGVAGLYDYGPPGCAVKANVLAFWRQHFVLEENMLEVDCPCVTPEVVLKASGHVD 130

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +   M++  ++           ++  
Sbjct: 131 KFTDLMVKD-EKTGTCYRADHLVKDFC 156


>gi|195952939|ref|YP_002121229.1| histidyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932551|gb|ACG57251.1| histidyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
          Length = 406

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/392 (13%), Positives = 107/392 (27%), Gaps = 27/392 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYG 107
              +    R+        E+ +P ++  +L+  S G   D   KEM    D++ + +   
Sbjct: 21  FRYITDTFRKLFEVYNFEEIILPIVEYKELFDRSVGEVTDIVQKEMFVFEDKSKRLLTLR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +      H   Y+      +     FR E        R R+F         L  
Sbjct: 81  PEGTAGVVRSVVEHGLLYKKPFLKLFYEGPMFRYERPQSG---RKRQFHQIGCEVLGLDS 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA--DTGETQVFCSK 225
             +      +     +  +      I       P+      E +     D       C +
Sbjct: 138 PIADFEIINLCFDAFKKLNIDITLEINSIGC--PVCRPKYREALTNYLKDIEGLCKDCEE 195

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSA 279
                P+   +   +    L                 H + L   L       +      
Sbjct: 196 RRFKNPLRILDCKVETCKDLTKEAPIMLDYLCEDCSNHYKSLKIYLDSFGIPYKENPRLV 255

Query: 280 RGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           RG++     +F F        + T       D+ V+            AA IE       
Sbjct: 256 RGLDYYTKTVFEFVKD-----NLTLLAGGRYDNLVESLGGPKTPAVGFAAGIERIMLFLK 310

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
             + + +         +    +       K+   L + G  V     G  +  +  +AD 
Sbjct: 311 SQYKEELYAVVYIENTVLEALE-----ALKVANILREKGKRVELISKGSNLKKKLEIADK 365

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
           L     +I+G + +      +K+  T  ++ +
Sbjct: 366 LHASYTLIIGPEELKKGIYILKNMSTKEQQKI 397


>gi|25028319|ref|NP_738373.1| histidyl-tRNA synthetase [Corynebacterium efficiens YS-314]
 gi|259507374|ref|ZP_05750274.1| histidine--tRNA ligase [Corynebacterium efficiens YS-314]
 gi|32130111|sp|Q8FPL5|SYH_COREF RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|23493604|dbj|BAC18573.1| putative histidyl-tRNA synthetase [Corynebacterium efficiens
           YS-314]
 gi|259164999|gb|EEW49553.1| histidine--tRNA ligase [Corynebacterium efficiens YS-314]
          Length = 429

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 67/437 (15%), Positives = 130/437 (29%), Gaps = 35/437 (8%)

Query: 28  RTGMIHQHSK--GIYSWLPLGQKALDNVNA-IIREEQNRTGAIEMSVPTLQSADLWVES- 83
           RT  I   S   G+  + P    A   V    I +     G   + +P  +   L+    
Sbjct: 7   RTEKIQPFSAPKGVPDYAPPRSAAFVAVRDAFITQAHL-AGFEHIELPIFEETGLFARGV 65

Query: 84  -GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
               D   KEM   ADR ++++   P     +      H      LP         FR E
Sbjct: 66  GESTDVVSKEMYTFADRGERSVTLRPEGTAGVMRAVIEHSLDRGQLPVKLNYAGPFFRYE 125

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG-- 200
            RP+ G  R  +  +         P            SY  +        +    +S   
Sbjct: 126 -RPQAGRYRQLQ-QVGVEAIGVDDPALDAEIIALADRSYRSLGLTGFRLELTSLGDSNCR 183

Query: 201 PIGGDLSHEFIVLADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           P       +F++     E      ++   +   D          D  + L+ + +     
Sbjct: 184 PAYRQKLQDFLLNLPLDEETRRRAEINPLRVLDDKRAEVREMTADAPLMLDHLDDGCRTH 243

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGK-- 308
           +   + + ++         + V          F       G +  +     + G   +  
Sbjct: 244 FETVTGLLDDMGVPYEINPRMVRGLDYYTKTTFEFIHDGLGAQSGIGGGGRYDGLMAQLG 303

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
              +    YG+G  R + A+                    +  + +    Q  + A   I
Sbjct: 304 GQDLSGIGYGLGVDRTILALEAEGVTVGQE------RRVDVYGVPLG---QAAKKAMAGI 354

Query: 369 YARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
              L   G      + D G + G+    AD  G    +++G   + +  V +K      +
Sbjct: 355 INDLRAAGISADMSYGDRGLK-GAM-KGADRSGSLYTLVLGENELDNGTVAVKDMRAHDQ 412

Query: 427 EDMSLEEVINYASHRFS 443
           +D++L EV++    + +
Sbjct: 413 QDIALSEVVSALRAKLA 429


>gi|313205851|ref|YP_004045028.1| histidyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|312445167|gb|ADQ81522.1| histidyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|315022754|gb|EFT35778.1| histidyl-tRNA synthetase [Riemerella anatipestifer RA-YM]
 gi|325336712|gb|ADZ12986.1| Histidyl-tRNA synthetase [Riemerella anatipestifer RA-GD]
          Length = 452

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 6/166 (3%)

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
                 +  G  +Y G  + +  +    G+ G        +   G   +    I    D 
Sbjct: 285 LQFDITLARGLDYYTGAIFEVKSNEVQLGSIGGGGRYDNLTEVFGVKNIPGIGISFGLDR 344

Query: 336 KGIIW-----PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             ++              +  +     +Q        I  +L   G          ++  
Sbjct: 345 IYLVMEELNRFPQEVSQNVQYLFANYGEQEAF-YAMDIIQQLRTKGVSAELYPEAAKLKK 403

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           QF  A+  G P  V VG + + + +V IK+  TG +  ++LE+  N
Sbjct: 404 QFTYAEKKGIPYIVFVGEEEIKNKQVSIKNLETGEQNSLTLEDFFN 449


>gi|146283360|ref|YP_001173513.1| histidyl-tRNA synthetase [Pseudomonas stutzeri A1501]
 gi|166228600|sp|A4VNX0|SYH_PSEU5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|145571565|gb|ABP80671.1| histidyl-tRNA synthetase [Pseudomonas stutzeri A1501]
          Length = 429

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/444 (14%), Positives = 112/444 (25%), Gaps = 64/444 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP        + +   +     G  E+ +P L+  DL+        D   KEM  
Sbjct: 10  GMNDILPAQTPTWRYLESTFAQLLESYGYSEIRLPILEFTDLFARGIGEGTDVVDKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN++++   P            H  +        +     FR E   +    R R+F
Sbjct: 70  FLDRNEESLTLRPEGTAGCVRAVLEHGMTGGGQVQKLWYTGPMFRYEKPQKG---RYRQF 126

Query: 156 LMKDAYSFDLTPEGSKH---------------------------------SYNKMFVSYL 182
                  F+                                          Y    V+YL
Sbjct: 127 HQIGVEVFNQPGPDIDAELIVLTARLWKQLGLADAVTLQLNSLGSSEARARYRDALVAYL 186

Query: 183 RIFHRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           +       +    R  + P  I    + +   L     T      +             D
Sbjct: 187 QQRFEQLDEDSQRRLTTNPLRILDSKNAQTQALLTDAPTLHDYLDEESRAHFEGLKARLD 246

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +     I  +             E + D L     V A G   G +  FG K +  +  
Sbjct: 247 AVGIAYEINPKLVRGLDYYGRTVFEWVTDKLGAQGTVCAGGRYDGLVSQFGGKPTPGVGF 306

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                        +G           A I +  +   +                      
Sbjct: 307 AMGVERLVLLLETLGLVPETLNPAPHAYICAFGEAAELAALALAE--------------- 351

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK- 419
                 ++   L   G  +  +  G    SQF  AD  G    +I+G   ++   V  K 
Sbjct: 352 ------RLRDELP--GLRLLVNAGGGSFKSQFKKADKSGARYALILGDDELAGRVVGCKP 403

Query: 420 HRLTGIREDMSLEEVINYASHRFS 443
            R    ++ ++ + +    +    
Sbjct: 404 LRDDSEQQSIAWDALPERLAACLE 427


>gi|59800869|ref|YP_207581.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
 gi|240115278|ref|ZP_04729340.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|260440905|ref|ZP_05794721.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|268600959|ref|ZP_06135126.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|291044229|ref|ZP_06569938.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|75507409|sp|Q5F9G8|SYH_NEIG1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|59717764|gb|AAW89169.1| putative histidyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
 gi|268585090|gb|EEZ49766.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|291011123|gb|EFE03119.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
          Length = 431

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 60/434 (13%), Positives = 116/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLPLGQK-------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP+GQK               +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVGQKDFKLTAVFWQAFEDTVNRWTRAYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEAQLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENSRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    ++D  V +K       +
Sbjct: 356 --QALRAQGFNVIQHSGYQSLKAQMKKADNSGARFALIVAQDELADGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + +S  ++ +    
Sbjct: 414 QTVSATDLTDTLQQ 427


>gi|311250315|ref|XP_003124096.1| PREDICTED: probable histidyl-tRNA synthetase, mitochondrial-like
           [Sus scrofa]
          Length = 506

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 60/459 (13%), Positives = 126/459 (27%), Gaps = 51/459 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
            I +  KG   + P      + +  ++     R GA  +  P  +  ++  E  RY    
Sbjct: 55  FILKTPKGTRDFSPQQMVVREKILDMVVSCFKRHGAKRLDTPAFELKEMLTE--RYGEDS 112

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
             +  L D+  + +                     +      Y +   +R E  P     
Sbjct: 113 GLIYDLKDQGGELLSLRYDLTVPFARYLAM----NKVKKMKRYHVGKVWRRE-SPTIVQG 167

Query: 151 RSREFLMKDAYSF-DLTPEGSKHSYNKMFVSYLRIFH--RLGLKSIPMRAESGPIGGDLS 207
           R REF   D        P        K+    L         +K    R   G       
Sbjct: 168 RYREFCQCDFDIAGHFDPMIPDAECVKIMCEILSGLQLGDFLIKVNDRRLLDGIFAVCGV 227

Query: 208 HE--FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV--- 262
            E  F  +  + +     S   +   + ++     ++        Q     +   D+   
Sbjct: 228 PESKFHAICSSVDKLDKMSWKDVRHEMVAKRGLAPEVADRIGDYVQCHGGVSLVEDMLQD 287

Query: 263 ----HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                N++  + L + K +       G         SL     +      +  +      
Sbjct: 288 PELSRNKQALEGLGDLKLLFDYLTLFGIAEKISFDLSLARGLDYYTGVIYEAVLLQTPAQ 347

Query: 319 IGAMRVVAAVIE--SSHDGKGIIWPDSVAPFKISLINIKAH------DQVCRDACEKIY- 369
            G   +    +     +DG   ++           ++I         +Q  +   EKI  
Sbjct: 348 AGEEPLNVGSVAAGGRYDGLVGMFDPKGHTVPCVGLSIGVERIFSIVEQRMKTFGEKIRT 407

Query: 370 ----------------------ARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIV 406
                                 A L   G           ++ +Q   ++ +G PL VI+
Sbjct: 408 TETQVFVATPQKNFLRERLKLIAELWDAGIKAELMYKNNPKLLTQLHYSEDMGIPLVVII 467

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           G + + +  ++++   +     +  E ++     R S +
Sbjct: 468 GEQELKEGFIKLRSVASREEVAIKRENLVAEIQKRLSES 506


>gi|296085531|emb|CBI29263.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 81/279 (29%), Gaps = 30/279 (10%)

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD--LSHEFIVLADTGE 218
                  +         +     +       +  +RA S   G D     +F    +  +
Sbjct: 303 EMAHYAADCWDAEIECSYGWIECVGIAD-RSAYDLRAHSEKSGVDLVAHEKFSEPREVEK 361

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
             +   K  +            +  +L ++ E+      AT +   E  F+     K V+
Sbjct: 362 LVIATVKKELGLAFRGNQKMVVE--ALEAMDEKEALEMKATLESKGEAEFNVCTLGKNVT 419

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            +            K  + +S   K    +     +     G  R++  + E     +  
Sbjct: 420 IK------------KNMVTISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLFEQCFYTRPS 467

Query: 339 IWPDSV---APFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              D       F   +  IK        D+      + I   L+  G     D  G  IG
Sbjct: 468 KAGDEQLNVFAFPPLVAPIKCSVFPLIQDKKYDAVAKLISKSLTVAGISHKIDISGATIG 527

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
            ++A  D LG P  + V     S S V I+ R +  +  
Sbjct: 528 KRYARTDELGIPFAITVD----STSSVTIRERDSKDQIR 562



 Score = 52.4 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 76/289 (26%), Gaps = 5/289 (1%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYD 87
           +  I++   G+Y + P G     NV A  R+        +E+  P +    +   SG  D
Sbjct: 27  SFKIYRGVAGLYDYGPPGCAVKANVLAFWRQHFVLEENMLEVDCPCVTPEVVLKASGHVD 86

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
            +   M++  ++           ++ + D   +     R   +     + K        F
Sbjct: 87  KFTDLMVKD-EKTGTCYRADHLVKDFLLDDLSAEELGARIKEYGITAPETKSPLSDPYPF 145

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR-LGLKSIPMRAESGPIGGDL 206
            +M              + PE ++  +      Y     +     +   +A    I    
Sbjct: 146 NLMFQTSIGPSGLIPGYMRPETAQGIFVNFKDLYYYNGSKLPFAAAQIGQAFRNEI--SP 203

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
               + + +    ++    D  D   P  +   D    +    EQ +     T  +    
Sbjct: 204 RQGLLRVREFTLAEIEYFVDPEDKSHPKYSEVADLEFLMFPREEQTSGQSTRTIQLGEAV 263

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
               +         G     +   G              +   +     
Sbjct: 264 STGIVNNETLAYFIGRVYLFLTRLGIDKDRLRFRQHLAKEMAHYAADCW 312


>gi|17232504|ref|NP_489052.1| histidyl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|32130131|sp|Q8YMC2|SYH_ANASP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|17134150|dbj|BAB76711.1| histidyl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 462

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
            P    ++ +   D++      K+  +L + G +V  +    Q+G QF  AD  G    V
Sbjct: 365 PPTPAQVVVVNMQDELMPTY-LKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCV 423

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           I+G+   +  K  +K   +G + +++L ++      R 
Sbjct: 424 IIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 461



 Score = 38.6 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 17/48 (35%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           G   +LP  ++    +   IR      G   +  P ++  ++    G
Sbjct: 13 SGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKG 60


>gi|302348333|ref|YP_003815971.1| Threonyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
 gi|302328745|gb|ADL18940.1| Threonyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
          Length = 468

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 76/192 (39%), Gaps = 15/192 (7%)

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS------YG 318
           E+L + + ++      G   G    +  +YSL + A      G       G+        
Sbjct: 270 EELEEGISKDTTWIDVGTSKGFSIPYDIQYSLRLLAYRTRGGGLAALGLHGAVRDRQVTC 329

Query: 319 IGAMRVVAAVIESS-----HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G +R++ + +          GK    P  ++P ++++I +K       +   ++   L 
Sbjct: 330 FGPLRLIMSSLIDFGLKLADSGKTPYLPFWLSPLQVAVIPVK---DQHVEYARRLLQDLI 386

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIREDMSLE 432
            VG   + D   + +G++   A     P+  +VG K V  + V I+ R L G +E +  E
Sbjct: 387 DVGARAYLDPPTKGLGARVRAAGKAWVPIIAVVGDKEVESNTVNIRRRWLQGQQEVVQAE 446

Query: 433 EVINYASHRFSN 444
            ++   S   ++
Sbjct: 447 ALVEEVSQLLAS 458


>gi|298714373|emb|CBJ27430.1| Histidyl-tRNA Synthetase (C-terminal region) Histidyl-tRNA
           Synthetase (N-terminal region) [Ectocarpus siliculosus]
          Length = 576

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 59/427 (13%), Positives = 118/427 (27%), Gaps = 48/427 (11%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDK 102
           P   +  + +    R   +  G  E   P L+S  L+  +SG  +   +++    D+  +
Sbjct: 152 PEDMRLRNWLFGHWRGVASSFGFEEYDAPVLESESLYTRKSG--EEVTQQLYCFEDKGGR 209

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD-AY 161
            +   P     +  +  +  KS   LP  ++ I   +R E   R       ++ M     
Sbjct: 210 RVSLRPEMTPSLARMVMAKRKS-LTLPVKWFSIPQCWRYERMTRGRRREHYQWNMDIWGV 268

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           S          +    F         +G+     R  S  +  ++ H   V  D      
Sbjct: 269 SGVAAEAELLGAMVTFFERVGLRAEDVGI-----RVNSRGVLTEVLHSLGVPGDKHTATC 323

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQW------------TAPYAATSDVHNEKLF- 268
                    P+ +   D  ++    + V++              A     S    E    
Sbjct: 324 VLVDKLDKMPLEAVAGDLAELGLEETSVKRLLEVMELRDMGGVEAFLGKESPAAEELRKL 383

Query: 269 -----------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSA----TFKGADGKDHYVQ 313
                        + +   V       G +F    +     +      +           
Sbjct: 384 FALAESYGISDWLVLDCSVVRGLAYYTGTVFEAFDRRGKLRAIAGGGRYDALLESFGGEA 443

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           + + G G    V   + S                          D   + A  ++ A L 
Sbjct: 444 LPAAGFGFGDAVIVELLSDRGLLPKEAGPGATAVVFGW------DDELQGAATEVAASLR 497

Query: 374 KVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           + G  V         +    F  A  +G    V+V        KV +K   T  ++++ +
Sbjct: 498 REGISVDLVLQPRKTKAN--FKHATRVGATYVVMVAPSEWEAGKVSVKDLRTSDQKELPV 555

Query: 432 EEVINYA 438
            EV ++ 
Sbjct: 556 GEVASHI 562


>gi|146319436|ref|YP_001199148.1| seryl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|145690242|gb|ABP90748.1| Seryl-tRNA synthetase [Streptococcus suis 05ZYH33]
          Length = 428

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 74/198 (37%), Gaps = 12/198 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E    G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 208 FYKNLGARLERALYNFMLDEHIAEGYQEIITPYMVNHDSMFGTGQYPKFKED---TFELA 264

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R+ I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 265 DTNFVLIPTAEVPLTNYYRNEILEEKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 324

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +           +   I  +LGL    +   +G +G   +     E  +
Sbjct: 325 KVEMVKFATPEQSYDELEKMT-ANAENILQKLGLPYRVLALCTGDMGFSAAKTYDLEVWI 383

Query: 213 LADTGETQVFCSKDFMDF 230
            A     ++    +  DF
Sbjct: 384 PAQNAYREISSCSNTEDF 401


>gi|156030577|ref|XP_001584615.1| hypothetical protein SS1G_14384 [Sclerotinia sclerotiorum 1980]
 gi|154700775|gb|EDO00514.1| hypothetical protein SS1G_14384 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 362

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 22/158 (13%)

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG-------------- 307
           +    +     E      + IE+GH F+ GT+YS PM AT                    
Sbjct: 205 IMEGDICPKCQEPTLKVEKAIELGHTFHLGTRYSKPMEATVTVPCNLVENKSEEITALLG 264

Query: 308 ----KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
                   ++MG +GIG  R++ AV E+  DGKG+ WP  ++PF+I +I  K  D+    
Sbjct: 265 ENGQVQVSMEMGCHGIGVTRMIGAVAETLVDGKGLNWPRVMSPFEIVVIPGKGSDEG--- 321

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
              +I+   S    D   DD G  I  +   ADL+G+P
Sbjct: 322 -ALQIFDIFSIAAMDPVIDDRGVSIAWKLRDADLIGYP 358


>gi|121593583|ref|YP_985479.1| histidyl-tRNA synthetase [Acidovorax sp. JS42]
 gi|189082284|sp|A1W578|SYH_ACISJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|120605663|gb|ABM41403.1| histidyl-tRNA synthetase [Acidovorax sp. JS42]
          Length = 429

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 68/430 (15%), Positives = 127/430 (29%), Gaps = 31/430 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      + +   +R    R     +  P ++   L+V   G   D   KEM  
Sbjct: 9   GMNDILPPDSARWEWLEDKVRTLMARYAYRNIRTPIVEPTPLFVRGLGEVTDIVEKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +   +                     +     Y +   FR E   R    R R+F
Sbjct: 69  FEDRLNGEQLTLRPEATAGVVRAVVEHSMLYDGGKRLYYMGPMFRHERPQRG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
               A +       +        +    ++  LGL+++ +   S     +       L  
Sbjct: 126 HQIGAEALGFPGAEADAEI---ILLAHALWAELGLENVRLELNSLGQPDERRAHRAALIA 182

Query: 216 TGETQVF-----CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             E  +        +     P+   +T    + +L     +        S  H E +   
Sbjct: 183 YLEQHMDVLDEDARRRLHSNPLRILDTKNPAMQALVEGAPRLIDFLGEASLQHFETVKAI 242

Query: 271 LPENKRVS------ARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           L  N  V        RG++     +F F T     + +      G  +   +   G  + 
Sbjct: 243 LDANGVVWSLNPRLVRGMDYYNLTVFEFVTDQ---LGSQGTICGGGRYDYLIEQIGGKSA 299

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
             V   +      + +   ++      +       D            RL   G  V   
Sbjct: 300 PAVGWALGVERVLELLKEQEAQVARPAADAYAVVPDASALPVVMATLQRLRAQGVSVQMH 359

Query: 383 DM---GEQIGSQ---FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVI 435
                GE +GS    F  AD  G    ++ G+  ++   V +K  R +G + +  L  + 
Sbjct: 360 SSTAAGEGMGSMKSQFKKADASGARYALVFGADELARGAVTVKPLRDSGEQAERPLAALA 419

Query: 436 NYASHRFSNN 445
            +A+   S+ 
Sbjct: 420 EWAATLQSSR 429


>gi|126696727|ref|YP_001091613.1| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
 gi|166222760|sp|A3PE37|SYS_PROM0 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|126543770|gb|ABO18012.1| Seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
          Length = 425

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 87/234 (37%), Gaps = 18/234 (7%)

Query: 9   PILQENPRDAEIASHKLMLRTGM----IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           P+++EN +        L L   +    I +      + +  G +    +   + +   + 
Sbjct: 134 PLIKENIKSHWEIGESLNLFDFVKSTKISKSR--FVTLIGNGARLERALINFMLDMHTKN 191

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E+  P L +++    SG+   +  E  +     +  +   PT E  +T   R+ +  
Sbjct: 192 GYLELMPPALVNSESLTGSGQLPKFSNESFKC---FNDDLWLSPTAEVPLTAFHRNELID 248

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP  +      FR E     R   G++R  +F   + Y F   P  S  ++ K+   
Sbjct: 249 PKKLPIKYVAYSPCFRREAGSYGRDTKGLIRLHQFNKVELYWFC-DPSKSLEAHKKITSD 307

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEF----IVLADTGETQVFCSKDFMDF 230
              I  +L L    +   +G +G   S  F     + +     ++    + +DF
Sbjct: 308 AESILKKLNLPYRLVDICTGDLGFSSSRTFDLEVWLPSSKCYREISSCSNCLDF 361


>gi|148653698|ref|YP_001280791.1| histidyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
 gi|172048559|sp|A5WGQ0|SYH_PSYWF RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|148572782|gb|ABQ94841.1| histidyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
          Length = 436

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/411 (11%), Positives = 114/411 (27%), Gaps = 35/411 (8%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              + A++++  ++ G  E+ +P ++   L+  +     D   KEM    D++D      
Sbjct: 25  WRQLEAMLKQALDQFGYEEIRLPIVEETQLFARAIGDATDIVEKEMFSFTDKSDPPTPIT 84

Query: 108 PTHEEVMTDIFRSHIKSYRNLPF-TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
              E     +      +         + +   FR E   +    +  +  ++   S  + 
Sbjct: 85  LRPEGTAGAVRAVIEHNLLRGDSPKLWYMGPMFRYEQPQKGRYRQFHQLGVEAFGSEHVD 144

Query: 167 -PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
                      M+             +     +          EF+      +      +
Sbjct: 145 VEAELIAMTYLMWQRLGIDHELSLEINSLGELDERKAYRSALVEFL-QTKKEQLDEDSQR 203

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-------------P 272
                P+   ++   +  +L     +        S  H E+L   L              
Sbjct: 204 RLTTNPLRILDSKDPNTQALLMEAPRLADFLGEDSQAHFEQLKTYLTALGIEYVVNPNLV 263

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV---------QMGSYGIGAMR 323
                  + +        G++ ++     + G  G+   +               +G   
Sbjct: 264 RGLDYYNKTVFEWVTDKLGSQATVCAGGRYDGLIGQLKSIGKSEDKAKAVKSEPAVGFAM 323

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
            +  ++        I    +   F +   ++    Q      + +     +    V    
Sbjct: 324 GLERLLLLVQAVNPIQAQPACDVFVVVHPDLY---QQGLLYAQSLRQA--RSDLRVKM-A 377

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               + +Q   AD  G  L VI+    V    + +K   TG +  +S +++
Sbjct: 378 SASSLKAQMKKADKSGAQLTVILAQDEVESGTISVKTMHTGEQ--VSQDKL 426


>gi|74006038|ref|XP_858867.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 3
            [Canis familiaris]
          Length = 1183

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 5/143 (3%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSA-DLWVESGRYDSYGKEMLR 95
             G Y   P      +++      E  + G      P   S   L  E      +  E+  
Sbjct: 1041 SGCYILRPWAYSIWESIKDFFDAEIKKLGVENCYFPMFVSQGALEKEKTHVADFAPEVAW 1100

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 1101 VTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLR 1160

Query: 152  SREFLMKDAYSFDLTPEGSKHSY 174
            +REFL ++ +S   T E +    
Sbjct: 1161 TREFLWQEGHSAFATFEEAAEEV 1183


>gi|28868642|ref|NP_791261.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|32130096|sp|Q886Y9|SYH_PSESM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|28851880|gb|AAO54956.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 429

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/425 (14%), Positives = 129/425 (30%), Gaps = 32/425 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP       +    +    +  G  ++ +P ++  DL+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRHFEGTVSRLLDNYGYRQIRMPVVEFTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN  ++   P            H  +        + I   FR E   +    R R+F
Sbjct: 70  FADRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQF 126

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---GPIGGDLSHEFI 211
                  F+L  P+         +  +  +  R  +K       +        D   EF+
Sbjct: 127 HQIGVEVFNLDGPDIDAELIVMTWRLWGMLGIRNAVKLELNSLGTSEARARYRDALVEFL 186

Query: 212 VLA------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW--TAPYAATSDVH 263
                    D+           +D   P       D   L   ++           + + 
Sbjct: 187 SAHLDQLDEDSQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRIHFEGLKARLD 246

Query: 264 NE----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  +   L       ++ +        G + ++     + G    +      + G+
Sbjct: 247 AAGIPYVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGL--VEQMGGKPTAGV 304

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G    +  ++      + +    +           +A +       E++  RL  +   V
Sbjct: 305 GFAMGIERLVLLLETLEQVPEEIARQVDVYLCAFGEAAELAALALTEQVRDRLPNLRLQV 364

Query: 380 FWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVI 435
                    G   SQF  AD  G    +I+G + ++   + +K  R  G +++++ + + 
Sbjct: 365 -----NAGAGSFKSQFKKADKSGALYALILGEEELAAKIIGVKPLRGQGEQQNIAWDALS 419

Query: 436 NYASH 440
            + + 
Sbjct: 420 EHLAS 424


>gi|110834720|ref|YP_693579.1| histidyl-tRNA synthetase [Alcanivorax borkumensis SK2]
 gi|123149360|sp|Q0VNE1|SYH_ALCBS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|110647831|emb|CAL17307.1| Histidyl-tRNA synthetase [Alcanivorax borkumensis SK2]
          Length = 422

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 69/458 (15%), Positives = 120/458 (26%), Gaps = 81/458 (17%)

Query: 31  MIHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY- 86
           M  + +   G+   LP        + A +       G  E+ +P ++  DL+  S G   
Sbjct: 1   MSKKITSIRGMNDILPEQTGLWQWLEAKVGAVLASYGYQEIRMPIVEQTDLFKRSIGEVT 60

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D   KEM    DRN  ++   P            H   Y      +Y     FR E    
Sbjct: 61  DIVEKEMYTFDDRNGDSLTLRPEGTASCVRACEQHGLLYNQTQRLWYA-GPMFRHERPQA 119

Query: 147 FGVMRSREFLMKDAYSFDLT------------------------------PEGSKHSYNK 176
               +  +  ++                                          +  Y  
Sbjct: 120 GRYRQFHQIGVETFGMTGPDIDAEVILLTARLWKALGLEDKVVLELNSLGDSADRARYRD 179

Query: 177 MFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF-----CSKDFMDFP 231
             V YL+            R E  P+        +   DTG  +V       +    D  
Sbjct: 180 ALVDYLKAHFDDLDGDSQKRLERSPLRV------LDSKDTGTREVLKGAPQLADYLNDEA 233

Query: 232 I---PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           +          D       +                E + D+L     V A G   G + 
Sbjct: 234 VAHFEGLKALLDASGIAYKVNPYLVRGLDYYGKTVFEWVTDALGAQGTVCAGGRYDGLVE 293

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
             G K +                     + +G  R++               P+  AP  
Sbjct: 294 QLGGKPT-----------------PAVGFAMGIERLIL--------LIEQERPELSAPVD 328

Query: 349 ISLINIKAHDQVCRDACEKIYARL--SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
           + ++ +           E +   L    +         G    SQ   AD  G  + +I+
Sbjct: 329 VYVMAMGDVLAPTMALSEHLRDALPGRAIQLHC----GGGSFKSQMKKADRSGAAVGLIM 384

Query: 407 GSKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHRFS 443
           G   ++   V +K  R  G +  ++  +V N  +    
Sbjct: 385 GEDELASGVVTVKPLRGQGEQVQVAQGDVANAVTSFLE 422


>gi|149277280|ref|ZP_01883422.1| histidyl-tRNA synthetase [Pedobacter sp. BAL39]
 gi|149232157|gb|EDM37534.1| histidyl-tRNA synthetase [Pedobacter sp. BAL39]
          Length = 461

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 63/196 (32%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             +  I E  T      +  H + +     E     ARG+       F  K +     + 
Sbjct: 264 AGMKGIAEIETVFGYLAALQHPDTMHQPNVELDITLARGLNYYTGCIFEVKTNEATMGSI 323

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G    D    M          ++   +  +D    +     +    + + I   D    
Sbjct: 324 GGGGRYDDLTGMFGLKGLTGVGISFGADRIYDVLMELNLFPESAVAGTRVLISNFDDAAE 383

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
                +  +L   G          ++  Q + AD    P  V++GS+ + +  + +K   
Sbjct: 384 RYALPLLQQLRAAGIAAELYPAAAKLKKQMSYADAKNIPYVVLIGSEEMQEGLLTLKDMR 443

Query: 423 TGIREDMSLEEVINYA 438
           TG +E +++ E+I   
Sbjct: 444 TGQQEKLAIAEIITRV 459


>gi|330965916|gb|EGH66176.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 429

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 60/426 (14%), Positives = 128/426 (30%), Gaps = 34/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP       +    +    +  G  ++ +P ++  DL+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRHFEGTVSRLLDNYGYRQIRMPIVEFTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN  ++   P            H  +        + I   FR E   +    R R+F
Sbjct: 70  FADRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQF 126

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---GPIGGDLSHEFI 211
                  F+L  P+         +  +  +  R  +K       +        D   EF+
Sbjct: 127 HQIGVEVFNLDGPDIDAELIVMTWRLWGMLGIRNAVKLELNSLGTSEARARYRDALVEFL 186

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF--- 268
             A   +      +     P+   +T   +  ++     +        S +H E L    
Sbjct: 187 -SAHLDQLDEDSQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRIHFEALKARL 245

Query: 269 ----------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                       L       ++ +        G + ++     + G   +         G
Sbjct: 246 DAAGIPYVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGLVEQKGGKPTAGVG 305

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                    ++  + +         V  +  +         +      ++  +L  +   
Sbjct: 306 FAMGIERLVLLLETLEQVPEEIGRQVDVYLCAFGEAAELAALALTE--QVRDQLPNLRLQ 363

Query: 379 VFWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEV 434
           V         G   SQF  AD  G    +I+G + ++   + +K  R  G +++++ + +
Sbjct: 364 V-----NAGAGSFKSQFKKADKSGALYALILGEEELAAKIIGVKPLRGQGEQQNIAWDAL 418

Query: 435 INYASH 440
             + + 
Sbjct: 419 SEHLAS 424


>gi|300858582|ref|YP_003783565.1| histidyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686036|gb|ADK28958.1| Histidyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206294|gb|ADL10636.1| Histidyl-tRNA synthetase [Corynebacterium pseudotuberculosis C231]
 gi|302330851|gb|ADL21045.1| Histidyl-tRNA synthetase [Corynebacterium pseudotuberculosis 1002]
 gi|308276536|gb|ADO26435.1| Histidyl-tRNA synthetase [Corynebacterium pseudotuberculosis I19]
          Length = 423

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/395 (11%), Positives = 110/395 (27%), Gaps = 27/395 (6%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   + +P  +   L+        D   KEM   ADR ++++   P     +      H
Sbjct: 40  AGYEHIELPVFEETTLFARGVGESTDVVTKEMYTFADRGERSVTLRPEGTAGVMRAVIEH 99

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL----------TPEGSK 171
                 LP         FR E        + ++  ++     D                 
Sbjct: 100 NLDRGQLPVKLKYYGPFFRYERPQAGRYRQLQQVGVEAIGIDDPALDAEVIALADRSLKA 159

Query: 172 HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                  +    +       +   + +       L  E    A+    +V   K      
Sbjct: 160 IGLQGYRLELTSLGDGSCRPAYRQKLQDFLFSLPLDEETRRRAEINPLRVLDDKRPEVRD 219

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
           + ++     D +S        T            ++   +        +          G
Sbjct: 220 MTADAPLMLDNLSSECREHFETVTGLLDDLGVAYEINPRMVRGLDYYTKTTFEFVHDGLG 279

Query: 292 TKYSLPMSATFKGADGK--DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           T+  +     + G   +     +    Y +G  R + A+                +   +
Sbjct: 280 TQSGIGGGGRYDGLMAQLGGQELSGIGYALGVDRCLLALQSEEKTITDG------SRVAV 333

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVG 407
             + +    +  + +   I  +L   G      + D G + G+    AD  G    +++G
Sbjct: 334 FGVPMG---EQAKRSMVSIVDKLRAQGIPADMSYGDRGLK-GAM-KGADRSGARFTLVLG 388

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            + +    V +K  ++  + D++++E++       
Sbjct: 389 DRELEHGVVAVKDMVSKEQRDIAIDELVVQLKASL 423


>gi|229018548|ref|ZP_04175407.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH1273]
 gi|229024804|ref|ZP_04181240.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH1272]
 gi|228736515|gb|EEL87074.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH1272]
 gi|228742760|gb|EEL92901.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH1273]
          Length = 430

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 67/430 (15%), Positives = 135/430 (31%), Gaps = 51/430 (11%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLKDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    + REF+  D
Sbjct: 71  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---KFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ES  I  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFRTLNLDVTIQYNNRKLLNGILESINIPTELTSDVILS 185

Query: 214 ADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            D  E        KD ++  I  E  D      L+ +              +N  + D +
Sbjct: 186 LDKIEKIGIDGVRKDILERGITVEMADTICTTVLSCLKLTIADF---KETFNNPLVTDGV 242

Query: 272 PENKRVSAR----GIEVGHIFY--FGTKYSLPMSATF------------KGADGKDHYVQ 313
            E +++       GI    IF        ++     +             G+ G+   + 
Sbjct: 243 EELQQLQQYLSALGINENTIFNPFLARGLTMYTGTVYEIFLTDASITSSIGSGGRYDNII 302

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
               G         +          +       F   +  I    ++    C +I  +L 
Sbjct: 303 GAFRGDNMNYPTVGISFGLDVIYTALSQKETISFTADVFIIPLGTELQ---CLQIAQQLR 359

Query: 374 K---VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
               +  ++         G +   A    +    P  +I+G + +S   V +++   G  
Sbjct: 360 STTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTETVVLRNMKEGTE 413

Query: 427 EDMSLEEVIN 436
             +SL  + N
Sbjct: 414 VKISLSSLEN 423


>gi|83753553|pdb|1WU7|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From
           Thermoplasma Acidophilum
 gi|83753554|pdb|1WU7|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From
           Thermoplasma Acidophilum
          Length = 434

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 62/421 (14%), Positives = 121/421 (28%), Gaps = 50/421 (11%)

Query: 53  VNAII----REEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMIYG 107
           V   I     E     G   +  P+L+  DL+  +SG  +   ++     D+  + +   
Sbjct: 22  VEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSG--EELLQQTYSFVDKGGREVTLI 79

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P           S     R L +  +    ++     P+ G  R  E    +A  F    
Sbjct: 80  PEATPSTVRXVTSRKDLQRPLRWYSFPKVWRY---EEPQAGRYR--EHYQFNADIFGSDS 134

Query: 168 EGSK-----------------HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS--- 207
             +                    Y     S       +G  +         I        
Sbjct: 135 PEADAEVIALASSILDRLGLQDIYEIRINSRKIXEEIIGGXTSSDPFSVFSIIDRYHKIS 194

Query: 208 -HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD----- 261
             EF+    +            D  + S     D+   +     +  A  AA  D     
Sbjct: 195 REEFVDQLRSAGIGEDGVSXIAD--LCSGTRGIDEXARITGKSSEEIARXAAVEDLLASY 252

Query: 262 -VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            V N +   S+         GI        G   ++     +           + + G G
Sbjct: 253 GVKNVRYDFSIVRG-LSYYTGIVFEAYDRSGQFRAILGGGRYDNLASLXSGESVPAVGFG 311

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
               V +++    + +      SV   ++     K +  +  +   K+          V 
Sbjct: 312 XGDAVISLLLKRENVQIPREKKSVYICRVG----KINSSIXNEYSRKLRE--RGXNVTVE 365

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             + G     ++A A  +G    VI G + +    V I++  TG +E++ L+ V+ +   
Sbjct: 366 IXERGLSAQLKYASA--IGADFAVIFGERDLERGVVTIRNXYTGSQENVGLDSVVEHLIS 423

Query: 441 R 441
           +
Sbjct: 424 Q 424


>gi|330833399|ref|YP_004402224.1| hypothetical protein SSUST3_1623 [Streptococcus suis ST3]
 gi|329307622|gb|AEB82038.1| hypothetical protein SSUST3_1623 [Streptococcus suis ST3]
          Length = 424

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E    G  E+  P + + +    +G+Y  + ++     +  
Sbjct: 165 FYKNLGARLERALYNFMLDEHIAEGYQEIITPYMVNHNSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R+ I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DTNFVLIPTAEVPLTNYYRNEILEEKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +           +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFATPEQSYDELEKMT-ANAENILQKLGLPYRVLALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNAYREISSCSNTEDFQARRAQIRYRDAA 371


>gi|213971517|ref|ZP_03399628.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|213923709|gb|EEB57293.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
          Length = 429

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/425 (14%), Positives = 129/425 (30%), Gaps = 32/425 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP       +    +    +  G  ++ +P ++  DL+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRHFEGTVSRLLDNYGYRQIRMPVVEFTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN  ++   P            H  +        + I   FR E   +    R R+F
Sbjct: 70  FADRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQF 126

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---GPIGGDLSHEFI 211
                  F+L  P+         +  +  +  R  +K       +        D   EF+
Sbjct: 127 HQIGVEVFNLDGPDIDAELIVMTWRLWGMLGIRNAVKLELNSLGTSEARARYRDALVEFL 186

Query: 212 VLA------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW--TAPYAATSDVH 263
                    D+           +D   P       D   L   ++           + + 
Sbjct: 187 SAHLDQLDEDSQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRIHFEGLKARLD 246

Query: 264 NE----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  +   L       ++ +        G + ++     + G    +      + G+
Sbjct: 247 AAGIPYVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGL--VEQMGGKPTAGV 304

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G    +  ++      + +    +           +A +       E++  RL  +   V
Sbjct: 305 GFAMGIERLVLLLETLEQVPEEIARQVDVYLCAFGEAAELAALALTEQVRDRLPDLRLQV 364

Query: 380 FWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVI 435
                    G   SQF  AD  G    +I+G + ++   + +K  R  G +++++ + + 
Sbjct: 365 -----NAGAGSFKSQFKKADKSGALYALILGEEELAAKIIGVKPLRGQGEQQNIAWDALS 419

Query: 436 NYASH 440
            + + 
Sbjct: 420 EHLAS 424


>gi|195442338|ref|XP_002068915.1| GK17767 [Drosophila willistoni]
 gi|194165000|gb|EDW79901.1| GK17767 [Drosophila willistoni]
          Length = 764

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 56/160 (35%), Gaps = 8/160 (5%)

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
           NK      +  G       K ++ +  + K    ++    +     G  R++ A++E + 
Sbjct: 567 NKGHYKLTLTDGSAHQL-EKDTIQVKRSSKTIHVEEFIPSVVEPSFGIGRIMYALLEHNF 625

Query: 334 DGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
             +              +  +K      +++   +   +++ + L+K       DD    
Sbjct: 626 QCRDGDEQRCYFTLPPIISPLKCSILPLSNNADFQPFTQQLSSSLTKAELSHKVDDSSGS 685

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIR 426
           IG ++A  D +  P  + V    +     V ++ R +  +
Sbjct: 686 IGRRYARTDEIAIPYGITVDFDTLKTPHTVTLRDRDSMKQ 725



 Score = 42.0 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G Y + P+G     N+ ++ R+        +E+    L   
Sbjct: 158 LLKRRFFYDQSFAIYGGITGQYDFGPMGCALKSNILSLWRQYFALEEQMLEVDCSILTPE 217

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  + +   M++     + 
Sbjct: 218 PVLKASGHVERFADLMVKDVKTGEC 242


>gi|47186126|emb|CAF94519.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 88

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 367 KIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           ++       G     D D G  +  +   A L  +   ++VG K  + + V ++ R   +
Sbjct: 1   QVRQDFHSSGFMTDVDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKTSNTVNVRTRDNKV 60

Query: 426 REDMSLEEVINYASHRFSNN 445
             + ++EE I       ++ 
Sbjct: 61  HGERTVEECIQRLKQLKNSR 80


>gi|327274313|ref|XP_003221922.1| PREDICTED: LOW QUALITY PROTEIN: glycyl-tRNA synthetase-like [Anolis
           carolinensis]
          Length = 686

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 75/290 (25%), Gaps = 24/290 (8%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
            +   + + +              ++         E +  AD     + C       P+ 
Sbjct: 369 ISPNMLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLV 428

Query: 234 SENTDFD--------------DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
           +E    +               I        +    Y +  D       + L   K    
Sbjct: 429 AEKPLKEPRTANVVQFEANKGTIGKAYKKDAKLVLEYLSICDECYICEMEKLLNEKGEFT 488

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
              E G  F              K    ++    +     G  R++  V E +   +   
Sbjct: 489 IETE-GKTFQLTKDMVSVKRFQ-KTLHVEEIVPNVIEPSFGIGRIMYTVFEHTFRIREGD 546

Query: 340 WPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
              +   F   +   K      + +Q      +++   L++ G     DD    IG ++A
Sbjct: 547 EQRTYFSFPAVVSPYKCSVLPLSQNQEFMPFVKELAEALTRNGVSHKVDDSSGSIGRRYA 606

Query: 394 VADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHR 441
             D +G    + +    V+        + R +  +    + E+       
Sbjct: 607 RTDEIGVXFGITIDFDTVNRTPHTPTXRDRASMPQIRAEISELPVIVRDL 656



 Score = 50.9 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+    R+        +E+    L    +   SG  D +   M++
Sbjct: 92  SGLYDFGPVGCALKNNIIQAWRQHFIQEEQILEIDCTMLTPESVLKTSGHVDKFADFMVK 151

Query: 96  LADRNDK 102
                + 
Sbjct: 152 DVKNGEC 158


>gi|32470802|ref|NP_863795.1| histidyl-tRNA synthetase [Rhodopirellula baltica SH 1]
 gi|39932076|sp|Q7UZ20|SYH_RHOBA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|32442947|emb|CAD71466.1| histidyl-tRNA synthetase [Rhodopirellula baltica SH 1]
          Length = 442

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 82/456 (17%), Positives = 132/456 (28%), Gaps = 65/456 (14%)

Query: 31  MIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           MI   + KG   +LP      + +    RE     G   +  PTL+  ++    G  D  
Sbjct: 1   MIQPRTLKGFRDYLPAAMIPREQLMQTAREVFRSFGFAPIDTPTLEHLEILTGKG-SDET 59

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
            +++    D   + +         +      H       PF  Y I   +R E       
Sbjct: 60  DRQLYSFEDNGGRPVGMRFDLTVPLARFAAQH-IGTLGTPFKRYHIAPVWRGEKPQEG-- 116

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
            R REF+  D  +   T E +      +  + L     +G+ +  +   +  I      E
Sbjct: 117 -RYREFVQCDFDTIGTTSELADIEAVCVIDALL---RAIGIDAFTISINNRAILT-GLLE 171

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA-ATSDVHNEKLF 268
            + LAD     +          I  E T  + + S     EQ  A    A  D   E + 
Sbjct: 172 SLGLADKTTPVLRSLDKLGK--IGREKTANEMVESAGVTAEQADAVLRLAECDGDAESIL 229

Query: 269 DSLPE---NKRVSARGIEV--------------------------------GHIFY---- 289
            SLPE       +A GIE                                 G IF     
Sbjct: 230 ASLPEITGGNETAAAGIERLTQIYRGALASGVSPDRLKIDVSIARGLDYYTGVIFETTLD 289

Query: 290 -FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                 S+     +    G      +   G             S      +         
Sbjct: 290 ELPGIGSVCSGGRYDNLAGLYTKQHLPGIGASLGLDRLLAALESLGRLSGVSKPCAVFVP 349

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
                    D+  RD   K+ ++L   G  V      +++G Q   AD  GF + +I G 
Sbjct: 350 FF-------DKGHRDDYLKLASQLRDAGIGVEVYPEPKKLGQQLKYADSQGFAVAIIAGG 402

Query: 409 KFVSDSKVEIKHRLTGIREDM-----SLEEVINYAS 439
                  V++K   T   +D+     S + +I    
Sbjct: 403 NEWEAGAVQVKTLATKESQDVAYSHESPDALIEAIQ 438


>gi|226946066|ref|YP_002801139.1| histidyl-tRNA synthetase [Azotobacter vinelandii DJ]
 gi|259511938|sp|C1DE56|SYH_AZOVD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|226720993|gb|ACO80164.1| histidyl-tRNA synthetase [Azotobacter vinelandii DJ]
          Length = 428

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 67/445 (15%), Positives = 118/445 (26%), Gaps = 66/445 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP            +    +  G  ++ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRYFEKSVAGLLDGYGYRQIRMPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR--------- 146
             DRN  ++   P            H  S        + +   FR E   +         
Sbjct: 70  FEDRNGDSLTLRPEGTASCVRAVLEHGISGGGQVQKLWYVGPMFRHERPQKGRYRQFHQI 129

Query: 147 -----------------------FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
                                  +G++  RE +  +  S   +       Y +  V YL 
Sbjct: 130 GVEVFNLPGPDIDAELIVLTWRLWGLLGLREAVTLELNSLGSSEAR--ARYREALVEYLS 187

Query: 184 IFHRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
                  +    R  S P  I    + E   L            +             D 
Sbjct: 188 ARFERLDEDSQRRLSSNPLRILDSKNPETQALLVDAPKLADYLDEDSRQHFEGLKARLDV 247

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
                 I  +             E + D L     V A G   G +   G K +      
Sbjct: 248 AGIPYVINPKLVRGLDYYGKTVFEWVTDKLGAQGTVCAGGRYDGLVEQLGGKPTP----- 302

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
              A G    V+     +  +  V A +    D     + ++     + L          
Sbjct: 303 ---AVGFAMGVERLVLLLETLERVPAELSRQVDVYFCAFGEAAELAALGLAE-------- 351

Query: 362 RDACEKIYARLSKV--GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                    RL     G  +  +       SQ   AD  G    +++G   ++   V +K
Sbjct: 352 ---------RLRDALPGLRLAVNAGAGSFKSQLKKADKSGALYALVLGEDELAGRIVGLK 402

Query: 420 H-RLTGIREDMSLEEVINYASHRFS 443
             R  G ++ +  +E+    +    
Sbjct: 403 SLRAEGEQQSVGWDELGERLAACLR 427


>gi|229592440|ref|YP_002874559.1| histidyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
 gi|259511954|sp|C3K1L3|SYH_PSEFS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229364306|emb|CAY52045.1| Histidyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
          Length = 429

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/441 (14%), Positives = 115/441 (26%), Gaps = 66/441 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP          + +    +  G  ++ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRYFESTVARLLDNYGYKQIRMPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H  +    P   + I   FR E   +    R R+F
Sbjct: 70  FEDRNGDSLTLRPEGTAACVRAVLEHGLTGGGQPQKLWYIGPMFRHERPQKG---RYRQF 126

Query: 156 LMKDAYSFDLTPEGSKH---------------------------------SYNKMFVSYL 182
                  F+L                                         Y    V YL
Sbjct: 127 HQIGLEVFNLDGPDIDAELIVLTWRLWGVLGIRDAVKLELNSLGTSESRGRYRVALVEYL 186

Query: 183 RIFHRLGLKSIPMRAESGPIG--GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                   +    R ++ P+      + +   +            D             D
Sbjct: 187 SAHLDKLDEDSQRRLKTNPLRVLDTKNADTQAVLVNAPKMADYLDDESRTHFEGLKARLD 246

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  I  +        S    E + + L     V A G   G +   G K +  +  
Sbjct: 247 AAGIPYVINPKLVRGLDYYSKTVFEWVTEKLGAQGTVCAGGRYDGLVEQMGGKPTTGVGF 306

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                        +        R V   + +  +   +         +  L N+      
Sbjct: 307 AMGIERLILLLETLEQVPEEISRQVDVYLCAFGEAAELAALALSEKVRDQLPNL------ 360

Query: 361 CRDACEKIYARLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                     RL    G             SQF  AD  G    +I+G   ++   +  K
Sbjct: 361 ----------RLQINAG--------AGSFKSQFKKADKSGALYALILGEDELAQQVIGFK 402

Query: 420 -HRLTGIREDMSLEEVINYAS 439
             R  G +++++ + +  + +
Sbjct: 403 PLRGQGEQQNIAFDALAAHLA 423


>gi|221125753|ref|XP_002158310.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 423

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 73/212 (34%), Gaps = 10/212 (4%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
            S  +  +  T   A  +    EKL  S+ EN   S    +  ++     +    +    
Sbjct: 194 KSFKNEAKAVTEYVAKMTVDEIEKLELSIKENGLFSINVNDKEYV--LKKEMVKEVRRFK 251

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------A 356
           K    ++    +     G  R++ AV+E +   +      +       L  +K      +
Sbjct: 252 KDIHVREVSPHVVEPSFGIGRIMYAVLEQNFRVREGDEQRTWLSLPPLLAPVKCSVLPLS 311

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--S 414
            ++      +KI A L+++      DD    IG ++A  D +  P  V V    ++   +
Sbjct: 312 KNEAFDPFVKKISAMLTELDVSHKVDDSSISIGRRYARTDEIAIPYGVTVDFDTINKEPN 371

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            V ++ R T  +  + +  V           R
Sbjct: 372 TVTLRERNTTKQIRVEVNFVGELVRDLVKGKR 403


>gi|326794515|ref|YP_004312335.1| Histidyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
 gi|326545279|gb|ADZ90499.1| Histidyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
          Length = 423

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 60/422 (14%), Positives = 118/422 (27%), Gaps = 28/422 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP        +   +       G  ++  P ++  +L+        D   KEM  
Sbjct: 10  GMNDILPGQSSVWQYIENAVANVVKSYGYHQIRFPVVEHTELFKRGVGETTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN +++   P                +  +   +Y     FR E   +    R R+F
Sbjct: 70  FDDRNGESLTLRPEGTASCVRAADQAGLLFNQVQRLWYV-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKM----------FVSYLRIFHRLG-----LKSIPMRAESG 200
                 SF +           +                  + +G             +  
Sbjct: 126 HQIGVESFGMATPDIDAELIILTARLWKQLGLLEHVELQLNTIGVAEARENFKASLVDYL 185

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA-T 259
               D   E      T                  E     D        EQ+    A   
Sbjct: 186 TEYKDELDEDSQRRLTTNPLRILDSKDQKTQKILEGAPSLDQYIDQESQEQFERLQAILK 245

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           ++  +  +   L        + +      + G + ++     + G   +       + G 
Sbjct: 246 ANDVSYVINRKLVRGLDYYGKTVFEWVTTHLGAQATVCAGGRYDGLVEQLGGKATPAVGF 305

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEKIYARLSKVGCD 378
                    +    +   +I   + A   + ++++ A  +       E I   L      
Sbjct: 306 AMG---IERLVLLLETLELIPDAAKASTDVFVVSMGADAELTSFSLAESIREALP--NLT 360

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           V     G    +Q   AD  G    +I+G   V++++ +IK   TG +E  +L++V  Y 
Sbjct: 361 VLRHCGGGNFKNQMKKADKSGARFTLILGDNEVANNECQIKDMTTGQQESCALDKVSEYL 420

Query: 439 SH 440
           S 
Sbjct: 421 SS 422


>gi|78186477|ref|YP_374520.1| seryl-tRNA synthetase [Chlorobium luteolum DSM 273]
 gi|123583337|sp|Q3B5A4|SYS_PELLD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78166379|gb|ABB23477.1| seryl-tRNA synthetase [Chlorobium luteolum DSM 273]
          Length = 430

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 73/213 (34%), Gaps = 13/213 (6%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
             G   ++  G +    +   + +      G  E+  P L + D    +G++  +  ++ 
Sbjct: 164 GAGFPVYVGKGARLERALINFMLDRHTEEHGYTEVFPPFLVNRDSLRGTGQWPKFADQVY 223

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
                 +  +   PT E  +T++ R  + S   LP ++      FR E     +   G +
Sbjct: 224 ---HMEEDELYAIPTAEVPVTNLHRDEMLSAEALPISYAAYSACFRREAGSYGKDTRGFL 280

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   +   F   PE S  +   +      I   L +    +   SG I  + +   
Sbjct: 281 RVHQFNKVEMVKF-TRPEESYAALETIRGHAEAILCALEIPYRVLLLCSGDISANAAKCY 339

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             E    A+    +     +F D+     N  F
Sbjct: 340 DIEVWSPAERKYLEASSCSNFEDYQARRANIRF 372


>gi|41407150|ref|NP_959986.1| histidyl-tRNA synthetase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|46396582|sp|P60917|SYH_MYCPA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|41395501|gb|AAS03369.1| HisS [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 420

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 64/400 (16%), Positives = 119/400 (29%), Gaps = 33/400 (8%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            R G  ++ +P  +   L+        D   KEM   ADR D+++   P     +     
Sbjct: 33  RRAGYGDIELPIFEDTALFARGVGESTDVVSKEMYTFADRGDRSVTLRPEGTAGVVRAVI 92

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            H      LP         FR E RP+ G  R  +  +         P            
Sbjct: 93  EHGLDRGTLPVKLCYAGPFFRYE-RPQAGRYRQLQ-QVGVEAIGVDDPALDAEVIAVADA 150

Query: 180 SYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGE----TQVFCSKDFMDFPIP 233
            +  +        I    +    P   +L  +F+   D  E             +D   P
Sbjct: 151 GFRSLGLDGFRLEITSLGDDSCRPQYRELLQDFLFGLDLDEETRRRARLNPLRVLDDKRP 210

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFY-- 289
                  D   L   +      +  T   H + L      N R+  RG++      F   
Sbjct: 211 EVRAMTADAPVLLDHLSDAAKQHFDTVLAHLDALGVPYVINPRM-VRGLDYYTKTTFEFV 269

Query: 290 ---FGTKYSLPMSATFKGADGK--DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
               G +  +     + G   +     +    +G+G  R + A+                
Sbjct: 270 HDGLGAQSGIGGGGRYDGLMRQLGGQDLSGIGFGLGVDRTLLALRAEGKSVGSAARC--- 326

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPL 402
               +  + +    ++       + A L   G  V   +   G + G+    AD  G  +
Sbjct: 327 ---DVFGVPLSDQAKLRLAV---LAAGLRAAGVRVDMAYGARGLK-GAM-RAADRSGARI 378

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +++G + +    V +K   TG +  + L+ V+     + 
Sbjct: 379 ALVLGDRDIDAGTVGVKDLQTGSQVSVELDSVVAEVLSQL 418


>gi|296120299|ref|YP_003628077.1| histidyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
 gi|296012639|gb|ADG65878.1| histidyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
          Length = 444

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 67/447 (14%), Positives = 133/447 (29%), Gaps = 52/447 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   +LP    A + +    R      G   +  P L+ +++ +  G  D   K++ R  
Sbjct: 12  GFRDYLPDAMMARERLMETARRVYRSYGFSPIDTPVLEYSEILLGKG-GDESDKQLFRFR 70

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D  D+ +         +      H      LPF  Y I   +R E   +    R REF+ 
Sbjct: 71  DNGDRDVAMRFDLTVPLARFSAMHA-GELGLPFKRYHIAPVWRGEKPQKG---RYREFVQ 126

Query: 158 KDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
            D      L+      +   ++     I      +       +  +  +   E + +A+ 
Sbjct: 127 CDFDTIGTLSNAADIETLMVIYDLLSAIGFTQNGQPQFGIRVNNRLILNGVLEQLGVAEK 186

Query: 217 --------------------GET---------------QVFCSKDFMDFPIPSENTDFDD 241
                                E                 +  S+  +D       ++   
Sbjct: 187 SVGVLRAIDKLPKVGREAVLAEMVEKVSLSSDQAAQVLDLLSSEADLDQLEKLLASNAKA 246

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
              +  + E  +A   A        +  S+          I    +    T  S+     
Sbjct: 247 SEGVARLKELLSAAKEAGIPASAVTIDLSIARGLDYYTGTIYETFLTALPTIGSVCSGGR 306

Query: 302 FKGADGKDHYVQMGSYG--IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +    G     Q+   G  +G  R++AA+                     +++ +   D+
Sbjct: 307 YDNLAGLFTKEQLPGIGASLGLDRLLAAM---------EELGMIGHATTPAVVFVPQFDE 357

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               A   +  RL   G         +++G Q   AD  GF L VI GS   +  + ++K
Sbjct: 358 SKLGAYMHLARRLRAAGIATEVYPEAKKLGKQLQYADRKGFRLAVIAGSDEFAKGEWQVK 417

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNR 446
              +G +E ++   +        +  +
Sbjct: 418 DLQSGSKEMIADAVLETRLLEILAAGK 444


>gi|29839844|ref|NP_828950.1| histidyl-tRNA synthetase [Chlamydophila caviae GPIC]
 gi|33301691|sp|Q824R3|SYH_CHLCV RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|29834191|gb|AAP04828.1| histidyl-tRNA synthetase [Chlamydophila caviae GPIC]
          Length = 430

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/405 (13%), Positives = 118/405 (29%), Gaps = 10/405 (2%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLADRNDKAMI 105
                 V  +I E  +  G  E+  P  + +++++  G + D   KEM    D+  +++ 
Sbjct: 26  TSLWHRVEDVIHEVCDLYGFSEIRTPVFEKSEVFLHVGEQSDIVKKEMYTFLDKKGRSLT 85

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P     +   F  +  S +     FY I   FR E +      +  +F ++       
Sbjct: 86  LRPEGTAPIVRSFIDNPMS-QREDNKFYYILPMFRYERQQSGRYRQHHQFGVEAIGVRHP 144

Query: 166 TPEG------SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
             +                       + LG  +   R +    G  L H   + + + E 
Sbjct: 145 LRDAEVLSLLWNFYSAIGLQYMQIQLNFLGGSATRKRYDQVLRGYFLQHLDSLSSLSKER 204

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                   +D   P +         +   V      Y          L      N R+  
Sbjct: 205 FNTNLLRILDSKEPEDQEIIKSAPPILEYVSDEDRKYFDEILSALSALNIPYSINSRL-V 263

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG++      F    +    +   G  G+   +   S G+         +      + ++
Sbjct: 264 RGLDYYTDVVFEAITTFGGHSYALGGGGRYDGLIAASGGVATP-ACGFGVGLERVIQTLL 322

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
              ++       + +   +      C      L  +G     D   +++ +    AD   
Sbjct: 323 AQGNLTLPSSHKLRLIPVEPEADSFCFVWAQHLRSLGIPTEVDWTHKKLKAALKTADTEK 382

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
                 +G + +   ++ IK+         S +EV     +   N
Sbjct: 383 VTFVCPIGERELLSEQLTIKNMSLRQEFSGSKQEVEQRLLYEIQN 427


>gi|145549355|ref|XP_001460357.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428186|emb|CAK92960.1| unnamed protein product [Paramecium tetraurelia]
          Length = 772

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 64/449 (14%), Positives = 135/449 (30%), Gaps = 45/449 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   +LP           II +   + GA+E+  P  +  +          YG+E  +L 
Sbjct: 40  GTRDFLPQQMVIRRQAFKIITDVFEQHGAVEIDTPVFELKETL-----IGKYGEEGGKLI 94

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
                      +    +T  F  ++ ++       Y I   +R +  P     R REF  
Sbjct: 95  YDLQDQGGEILSLRYDLTVPFARYLATHGYKKLKRYHIGKVYRRD-NPSIQQGRFREFFQ 153

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI---PMRAESGPIGGDLSHEFI--- 211
            D             +     +  +     LG   I     +     I      +     
Sbjct: 154 CDFDIAGENDPMVADAELIKIIDQIFTKLDLGPFQIKISNRKLLDAMIQIAGIPKTQFKT 213

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
           V +   +      K+        +    +    L+ +V+    P+     +  +K+F+  
Sbjct: 214 VCSSIDKLDKQPWKEIRQELTEKKGVTEEQADILSKMVQLRGEPFQLIQQLKEQKIFEQQ 273

Query: 272 PENKRVSA-----------------------RGIEV------GHIFYFGTKYSLPMSATF 302
            +                             RG++         +   G   S+     +
Sbjct: 274 GKEALDEMELLFNLLKYMNGLKNVIFDLSLARGLDYYTGLIQETVLLGGQLGSISGGGRY 333

Query: 303 KGADGKDHYVQMGSYGIGA-MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               G      +   G    +  + A++E  +   G++  ++ +   ++ I  K  D   
Sbjct: 334 DELVGMFSKNSIPCVGASIGIERIFAILEEKYKKSGVVLRENQSDCVVATIPSKNIDMNA 393

Query: 362 RDACEKIYARLSKVGCDVFW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                KIY  L   G        +   +G Q   A+    P  +++G   V    V+ K 
Sbjct: 394 EKF--KIYDLLWSNGIKADVCYKLNWNLGKQLTYANDQQIPFAIVIGEDEVKQEVVKFKD 451

Query: 421 RLTGIREDMSLEEVINYASHRFSNNRPVL 449
            +    E ++L++++ +   R    + +L
Sbjct: 452 FVEKKEETVNLKDLVQFIKQRVGKEQYML 480


>gi|224826450|ref|ZP_03699552.1| histidyl-tRNA synthetase [Lutiella nitroferrum 2002]
 gi|224601551|gb|EEG07732.1| histidyl-tRNA synthetase [Lutiella nitroferrum 2002]
          Length = 423

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/406 (15%), Positives = 105/406 (25%), Gaps = 24/406 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYG 107
            +    I+R      G   +  P ++   L+V S G   D   KEM    D  +   +  
Sbjct: 22  WEYFENILRGWLADYGYQNIRTPIVEETRLFVRSIGEVTDIVEKEMYSFTDSLNGDSLTL 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSF 163
                  T           N     + +   FR E       R       E L       
Sbjct: 82  RPEGTAGTLRAVVEHNLLYNATQRLWYMGPMFRHERPQKGRYRQFHQIGIEALGFAGPDI 141

Query: 164 DLTPEGSKHSYNKMF---VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           D           K      S     + LG K          I     H  ++  D     
Sbjct: 142 DAEIILMTADLWKRLGLADSVELQLNTLGNKDERAAHREALIAYLERHHDMLDEDGKRRL 201

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                  +D   P+     +    L   + ++  A Y     + +      +   + V  
Sbjct: 202 YSNPLRVLDTKNPALQEICNAAPRLTDYLGDESRAHYEGWKAMIDGLGIRYVENPRLVRG 261

Query: 280 RGIEVGHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                  +F       G + ++     + G   +         G G       ++    +
Sbjct: 262 LDYYNQSVFEWVTTELGAQGTVCAGGRYDGLVEQLGGKPAPGIGFGMGLERVMLLLQEKN 321

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                            + +            ++ A L   G  V          SQ   
Sbjct: 322 RLPASRG--------VDVYLVQQGAGAPLYAMQLAASLRAAGLSVIQHCGEGSFKSQMKK 373

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYAS 439
           AD  G    VIVG   V+++   +K  RL   +E ++L  V    +
Sbjct: 374 ADGCGAQFAVIVGENEVANATAVVKPLRLEAAQETVALAAVAETIT 419


>gi|267058|sp|P30053|SYH_STREQ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
          Length = 426

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/399 (14%), Positives = 113/399 (28%), Gaps = 19/399 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  + RE   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGVARETFKQYHYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P   Y I   FR E        R REF       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQIGVECFGS 136

Query: 165 LTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPIGGDLSHEFIVLA------DT 216
             P     +    +  + R+  +      +    A S         +++         D+
Sbjct: 137 ANPATDVETIAMAYHLFERLGIKGVTLHLNSLGNAASRAAYRQALIDYLSPMRDTLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +     +  S+ +   E+  A + A   +        + +  
Sbjct: 197 QRRLDENPLRVLDSKEKEDKIAVANAPSILDYQDEESQAHFDAVRSMLEALAIPYVIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+           A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEVDQSELT--ICAGGRYDGLVEYFGGPATPGFGFGLGLERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   +   + I         A   +   + + G  V  D +G +I +QF  A
Sbjct: 315 ILDKQGVELPVEEGLDVYIAVLGADANVAALALTQAIRRQGFTVERDYLGRKIKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           D     + + +G   +   +  +KH  T     +S +++
Sbjct: 375 DTFKAKVVITLGESEIKAGQAVLKHNQTRQEMTVSFDQI 413


>gi|238021957|ref|ZP_04602383.1| hypothetical protein GCWU000324_01862 [Kingella oralis ATCC 51147]
 gi|237866571|gb|EEP67613.1| hypothetical protein GCWU000324_01862 [Kingella oralis ATCC 51147]
          Length = 431

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/410 (13%), Positives = 115/410 (28%), Gaps = 30/410 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
                  +++   R G  ++  P ++  +L+V S     D  GKEM    D   +  +  
Sbjct: 29  WQAFENQVQKWTQRFGYKQIRTPIVEHTNLFVRSIGEETDVVGKEMYTFNDNAGETSLSL 88

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
                                P   + +   FR E   +    R R+F      +     
Sbjct: 89  RPEGTASCLRAVVEHDLTYAAPQKLWYMGAMFRAERPQKG---RYRQFHQVGIEALGFAD 145

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS----------HEFIVLADTG 217
                    M     R     G  ++ + +                    HE  +  D+ 
Sbjct: 146 PDIDAEIIAMCADLWRELGISGQLTLEINSLGNREERAAHRAALVAYLSQHEAELDDDSK 205

Query: 218 ETQVFCSKDFMDFPIPSE-NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                     +D   P+  +        L+ + E     Y     + +      +   + 
Sbjct: 206 RRLHTNPLRVLDSKNPALQDICNAAPRLLDYLGEASLQHYNTFKSLLDGLQIKYIENPRL 265

Query: 277 VSARGIEVGHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           V         +F       G + ++     + G    +      +  IG    +  ++  
Sbjct: 266 VRGLDYYNHTVFEWTTDKLGAQATVCGGGRYDGLM--EELGGRATPSIGFAMGIERLLLL 323

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             D   +    +   F +         +    A  K    L   G +V       ++ +Q
Sbjct: 324 VRDYGSLKADFAPDVFVMQQG------EGATLAAMKHAQTLRGAGLNVAQFSGSTKLKNQ 377

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASH 440
           F  AD  G    VI+    V+ + V IK  R    +  ++ +E++   + 
Sbjct: 378 FKRADQSGATFAVIIAENEVAQNTVTIKDLRGERGQTTVAADELVQQLNE 427


>gi|228959517|ref|ZP_04121203.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800149|gb|EEM47080.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 426

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 69/427 (16%), Positives = 127/427 (29%), Gaps = 41/427 (9%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 12  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 71

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 72  GKRELALRYDLTIPFAKVVA--MNPNLRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 126

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++       F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 127 VDIVGVESVMAEAELMGMAFELFRTLNLEITIQYNNRKLLNGILQAINIPTELTSDVILS 186

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT    +  ++    E +  P  A      
Sbjct: 187 LDKIEKIGIDGVRKDVLERGISEEMANTICNTVLSCLKLTIADFKEAFNNPLVADGVNEL 246

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           ++L   L       A GI    IF       L M                 S G G  R 
Sbjct: 247 QQLQQYL------IALGINENTIFNPFLARGLTMYTGTVYEIFLKDRSITSSIGSGG-RY 299

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARL 372
              +     D              +    +   + +   A            C +I  +L
Sbjct: 300 DNIIGAFRGDNMNYPTVGISFGLDVIYTALSQKETISSTADLFIIPLGTELQCLQIAQQL 359

Query: 373 SKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
                  V  +  G ++      A+    P  +I+G    S + V +++   G    + +
Sbjct: 360 RSTTSLKVELELAGRKLKRALNYANKENIPYVLIIGEDEFSTNTVVLRNMKEGSEVKVPI 419

Query: 432 EEVINYA 438
             + NY 
Sbjct: 420 SSLSNYL 426


>gi|330872878|gb|EGH07027.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 429

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/425 (13%), Positives = 124/425 (29%), Gaps = 32/425 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP       +    +    +  G  ++ +P ++  DL+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRHFEGTVSRLLDNYGYRQIRMPIVEFTDLFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN  ++   P            H  +        + I   FR E   +    R R+F
Sbjct: 70  FADRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQF 126

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---GPIGGDLSHEFI 211
                  F+L  P+         +  +  +  R  +K       +        D   EF+
Sbjct: 127 HQIGVEVFNLDGPDIDAELIVMTWRLWGMLGIRNAVKLELNSLGTSEARARYRDALVEFL 186

Query: 212 VLA------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW--TAPYAATSDVH 263
                    D+           +D   P       D   L   ++           + + 
Sbjct: 187 SAHLDQLDEDSQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRIHFEGLKARLD 246

Query: 264 NE----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  +   L       ++ +        G + ++     + G   +         G 
Sbjct: 247 AAGIPYVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGLVEQMGGKPTAGVGF 306

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                   ++  + +         V  +  +         +      ++  +L  +   V
Sbjct: 307 AMGIERLVLLLETLEQVPEEIGRQVDVYLCAFGEAAELAALALTE--QVRDQLPNLRLQV 364

Query: 380 FWDDMGEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVI 435
                    G   SQF  AD  G    +I+G + ++   + +K  R  G +++++ + + 
Sbjct: 365 -----NAGAGSFKSQFKKADKSGALYALILGEEELAAKIIGVKPLRGQGEQQNIAWDALS 419

Query: 436 NYASH 440
            + + 
Sbjct: 420 EHLAS 424


>gi|114320408|ref|YP_742091.1| histidyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311859|sp|Q0A986|SYH_ALHEH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|114226802|gb|ABI56601.1| histidyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 429

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 126/426 (29%), Gaps = 39/426 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G    LP        V + I+      G  E+ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GFSDILPEQTPLWQFVESNIQATLEAYGYREIRLPIVEKTELFSRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            +   +   P  +Y     FR E   +    R R+F
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRCGIQNGLFHGGQPRVWYA-GPMFRHERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES------GPIGGDLSHE 209
               A  +  +  G       M    LR    LGL+ + +   +               E
Sbjct: 126 HQIGAEVYGESGPGVDAEMILMTARLLRC---LGLEDVRLELNTLGTGEARAAHRAALVE 182

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF- 268
           ++   +         +   + P+   +T   D+ +L     +        S  H + +  
Sbjct: 183 YLQAHEDRLDDDARRRLHSN-PLRILDTKNPDMQALVEQAPRLMDYLDEDSRSHFQAVCR 241

Query: 269 ------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
                         L       +R +        G + ++     +     +       +
Sbjct: 242 VLDQAGVAYRVNPRLVRGLDYYSRTVFEWITDRLGAQGTVLAGGRYDTLVEQIGGKPTPA 301

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
            G          +       G                + A         E +  RL   G
Sbjct: 302 IGFALGLERLVSLLEESGISGPQSGP-------HAFVVSADSLRALPLVEGLRDRLP--G 352

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVI 435
             +     G    SQF  AD  G  L +++G + +++ +  +K  R    ++ +  E + 
Sbjct: 353 LRLQMQTEGGSFRSQFKRADRSGAALALVLGEEELAEGRFGVKDLRGDAEQQRLDPEALS 412

Query: 436 NYASHR 441
           +Y + R
Sbjct: 413 DYLARR 418


>gi|45655962|ref|YP_000048.1| histidyl-tRNA synthetase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|54039666|sp|P62371|SYH_LEPIC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|45599195|gb|AAS68685.1| histidyl-tRNA synthetase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 439

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/437 (13%), Positives = 134/437 (30%), Gaps = 44/437 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   + P   +  + + +++RE     G  E   P L+S DL+      +   +++    
Sbjct: 15  GTRDFYPEDMRLRNWMFSVMRETVLSFGYEEYDGPILESFDLYKAKSGEEIVERQLYDFI 74

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D+ ++ +   P     +  +   ++++    P  ++ I   +R E   +    R RE   
Sbjct: 75  DKGERRVAIRPEMTPTLARMVAGNLRN-LPKPVRWFSIPNLWRYEQPGKG---RLREHWQ 130

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            +   F +    ++     +  S L+ F           +    +   L +   +  D  
Sbjct: 131 LNVDLFGVDSHRAELEILLIADSILKKFGAPIGSYQIKVSHRKLLDSFLKNSLKLNGDQV 190

Query: 218 ETQVFCSKDFMDFPIPS----ENTDFDDIISLNSIVEQW------TAPYAATSDVHNEKL 267
                           +         ++     S++E +      T       D ++   
Sbjct: 191 HGVSKLLDKKSKISSEAFETEMKPFLNNFKEQFSLIETYLNSNLETVSKIPGIDTNSVSF 250

Query: 268 FDSLPE--NKRVSARGI------------EVGHIFYFGT-----KYSLPMSATFKGADGK 308
             +L +   +    + +              G IF         + SL     +    G 
Sbjct: 251 IQNLFQELGELGIDKQLLFDPSIIRGFDYYTGCIFEVFDTNPENRRSLYGGGRYDNLIGL 310

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
               Q+   G G   V        H+    +  +      I        D+       K+
Sbjct: 311 FSKEQLSGIGFGLGDVTLKNFLEGHNLIPNLSREKTIFLPIM-------DESLFVDTFKL 363

Query: 369 YARLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
              L +     +   D    +IG Q  +A+  G+   + +G   +    V+IK  ++G +
Sbjct: 364 SKELRENEILTETMLD--SAKIGKQIQIAEKKGYRYVLFLGESEIRTETVQIKDLISGEQ 421

Query: 427 EDMSLEEVINYASHRFS 443
           + +  + + +     F 
Sbjct: 422 KSLPRKGLSDTLKKDFQ 438


>gi|302795757|ref|XP_002979641.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
 gi|300152401|gb|EFJ19043.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
          Length = 1665

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/428 (12%), Positives = 122/428 (28%), Gaps = 29/428 (6%)

Query: 38   GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
            G   + P      + + +  +E     G  E+  P ++S  L+  ++G  +   +++   
Sbjct: 1093 GTRDFAPPLMLLRNWLFSHFKEVSRLFGFEEVDFPVVESEALYVRKAG--EEITQQLYNF 1150

Query: 97   ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
             D++ + +   P     +  +     KS    P  ++ I   +R E   +    R RE  
Sbjct: 1151 EDKSGRRLCLRPEITPSIARLIIQKGKS-LVFPLRWFTIGQCWRYERMTKG---RRREHY 1206

Query: 157  MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
              +   F +    ++       V+            + +R  +  +   +   + V  D 
Sbjct: 1207 QWNMDIFGVPGVEAEAELLAAIVTLFTNMGFT-ANDVRIRVSNRKVLQAVLDRYSVPQDK 1265

Query: 217  GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--- 273
              +                +    D+   ++ +          +    ++L  S  E   
Sbjct: 1266 FNSVCVVVDKINKISKEEVDQQLMDLGLSSTAINGIRHAILLKNLDDIQELIGSSSEAFL 1325

Query: 274  ---------------NKRVSARGIEVGHIFYFG---TKYSLPMSATFKGADGKDHYVQMG 315
                              V   GI  G  +Y G     +            G+   +   
Sbjct: 1326 EMKKLFALSKAYGYDEWLVVDLGIVRGLSYYTGIVFEAFDTQGKFRAICGGGRYDKLISN 1385

Query: 316  SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
              G           ++           S          +   D+  R     I +RL   
Sbjct: 1386 FGGPSIPACGFGFGDAVIVDLLNECNLSPVLGHEVDDVVFVLDEELRCHACNIVSRLRSA 1445

Query: 376  GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            G  V      +++   F  A  +     +++G +   +  V +K  +T    D+ + E++
Sbjct: 1446 GRTVDMILENKKLKWVFNYASRIDAKRMILLGIREWEEGNVRVKDLVTREETDVKVAELV 1505

Query: 436  NYASHRFS 443
                    
Sbjct: 1506 PRVPKEVQ 1513


>gi|260655467|ref|ZP_05860955.1| histidine--tRNA ligase [Jonquetella anthropi E3_33 E1]
 gi|260629915|gb|EEX48109.1| histidine--tRNA ligase [Jonquetella anthropi E3_33 E1]
          Length = 423

 Score = 74.8 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/415 (12%), Positives = 109/415 (26%), Gaps = 47/415 (11%)

Query: 58  REEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
           R+        E+ +P  +  +L+        D   KEM    D+  +++   P     M 
Sbjct: 30  RQTAEAFHYSEVHLPVFEHTELFARGVGDTTDIVEKEMYTFTDKGGRSITLRPELTAGMV 89

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             +  +     + P   +     FR E   +    R R+F   D          +     
Sbjct: 90  RSYVENGLGSSSSPVKLWGYGPMFRYERPQKG---RYRQFWQIDFEQLGSDSPLTDVEVI 146

Query: 176 KMFVSYLRI--------------FHRLGLKSIPMRAESGPIGGDLSHE-FIVLADTGETQ 220
              V                             +  +          E  +   +    +
Sbjct: 147 MTAVDLFADLGMKNLEVVVNSVGCPACRPVYRKVLLDYLESRRSELCETCLSRMERNPLR 206

Query: 221 VFCSKDFMDFPIPS-------ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
           V   K   +    +        +   D   ++   + +   PY+             L  
Sbjct: 207 VLDCKTDHEVVAGAPAIFDSLCSECADHFAAVKEGLARLGVPYSTDKT---------LVR 257

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                 +          G + ++     +          +V    +  G  R++  + E 
Sbjct: 258 GLDYYTKTAFEVKSGDLGAQSAVCGGGRYDNLSEAIGGPHVPGVGFAAGLDRMLLVMGEQ 317

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                     D+              D+  +    +I  RL + G +   D     + SQ
Sbjct: 318 GCSFGPEPSVDAQVICL---------DESVKLDALEILYRLRRAGFNADMDYQKRSMKSQ 368

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
              A        VI+G+  +S   V +K   +  ++D+   E+ N  +      +
Sbjct: 369 LKQALAGRAAAAVILGADEISRGVVALKDLRSAEQKDVQSSELENALAALLDEGK 423


>gi|145356603|ref|XP_001422517.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582760|gb|ABP00834.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 405

 Score = 74.8 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/407 (15%), Positives = 127/407 (31%), Gaps = 44/407 (10%)

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
           RE     G  E   P L+S +L+      +    ++   +D+ D+ +   P        +
Sbjct: 12  RECAKVFGFDEFDAPVLESEELFTRK-AGEEITTQLYNFSDKGDRRVALRPELTPSFARL 70

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
                KS   LP  ++ I   +R E   R    R RE    +     ++      +  ++
Sbjct: 71  ILQQGKS-LALPAKWFAIGQCWRYERMTRG---RRREHYQWNMDIVGVSGV---EAEAEL 123

Query: 178 FVSYLRIFHRLGLK--SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSE 235
             +    F R+G+    + ++  S  +  ++   F + +++              P    
Sbjct: 124 LAAITTFFKRVGVTSADVGIKVSSRKLLQEVLTRFGIDSESFAPVCVVVDKIEKLPREKI 183

Query: 236 NTDFDDIISLNSIVEQWTAP----------------------------YAATSDVHNEKL 267
             +  ++   +  VE   A                             YA      +  +
Sbjct: 184 EEELRELGVSDEAVEGILAATSMRTVEELEALIGPDAEAVKDLKKLFEYADAYGYRDWLV 243

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           FD+          GI        G   ++     +    G          G G      A
Sbjct: 244 FDACVVRGLAYYTGIVFEGFDRAGELRAICGGGRYDMLLGALGGENQPMVGFGFG---DA 300

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           VI      KG++   S    +  +  +    +  R A  ++ A+L   G  V      ++
Sbjct: 301 VIVELLKDKGLMPDFSKGDVQDLVFPLG---ESLRPAAMRVAAQLRDAGRTVDLILEDKK 357

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               F  A+ +G    +++G K      V +K   +    D+ LE++
Sbjct: 358 AKWAFKQAERVGAQRVILLGEKEWEAGNVRVKDLASREEVDVKLEDL 404


>gi|78189428|ref|YP_379766.1| histidyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
 gi|123757010|sp|Q3AQK2|SYH_CHLCH RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|78171627|gb|ABB28723.1| histidyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
          Length = 425

 Score = 74.8 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/399 (13%), Positives = 108/399 (27%), Gaps = 26/399 (6%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLA-DRNDKAMIYGPTHEEVMTDIFRS 120
            G  E+  P  +  DL+        D  GKEM     D   +++   P     +      
Sbjct: 35  YGFREIRTPMFEYTDLFQRGIGATTDIVGKEMFSFQPDPAGRSITLRPEMTAGVMRAALQ 94

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAY--SFDLTPEGSKHSY 174
           +    +      + I   FR E       R       E L   +     ++         
Sbjct: 95  NNLLAQAPLHKLFYIGELFRKERPQAGRQRQFNQCGAELLGVSSPAAVAEVMSLMMHFFG 154

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                      + LG     +            H  ++ A + E         +D   P+
Sbjct: 155 ALGLTGLTLKVNTLGNAEERLAYREALQAYFAPHRAMLDASSQERLEKNPLRILDSKNPA 214

Query: 235 ENTDFDDIISLNSIVEQ------WTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
                     L   +++          +  T    +  +   L                 
Sbjct: 215 LQELIAAAPRLYDYLQEASLRDFEKVLFYLTERRISYTIDYRLVRGLDYYCHTAFEVTSN 274

Query: 289 YFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
             G + ++     +       G    +    + +G  R++  + +    G     P  + 
Sbjct: 275 ELGAQDAIGGGGRYDALARELGSATDIPAVGFAVGMERLLIVLEKQGLLGNRHARPPRLY 334

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
                        Q   D   ++  RL   G     D  G  + +Q   A+ LG    + 
Sbjct: 335 VVVQQ--------QEMLDHALQLVWRLRNGGIRSELDLAGRSMKAQMREANKLGALYALF 386

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           VG+   +  K  +K+  T  + D+S+E V+       + 
Sbjct: 387 VGASECASGKYGLKNLATSEQTDLSIEAVMQLLHDHVTE 425


>gi|195978984|ref|YP_002124228.1| histidyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|229558734|sp|B4U0K6|SYH_STREM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|195975689|gb|ACG63215.1| histidyl-tRNA synthetase HisS [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 426

 Score = 74.8 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/399 (14%), Positives = 115/399 (28%), Gaps = 19/399 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  + RE   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 20  WQYVEGVARETFKQYHYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P   Y I   FR E        R REF       F  
Sbjct: 80  PEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQIGVECFGS 136

Query: 165 LTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPIGGDLSHEFIVLA------DT 216
             P     +    +  + R+  +      +    A S         +++         D+
Sbjct: 137 ANPATDVETIAMAYHLFERLGIKGVTLHLNSLGNAASRAAYRQALIDYLSPMRETLSKDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +     ++ S+ + + E+  A + A   +        + +  
Sbjct: 197 QRRLDENPLRVLDSKEKEDKIAVANVPSILDYLDEESQAHFDAVRSMLEALAIPYVIDTN 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+           A G+   +     G         +       
Sbjct: 257 MVRGLDYYNHTIFEFITEVDQSELT--ICAGGRYDGLVEYFGGPATPGFGFGLGLERLLL 314

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   +   + I         A   +   + + G  V  D +G +I +QF  A
Sbjct: 315 ILDKQGVELPVEEGLDVYIAVLGADANVAALALTQAIRRQGFTVERDYLGRKIKAQFKSA 374

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           D     + + +G   +   +  +KH  T     +S +++
Sbjct: 375 DTFKAKVVITLGESEIKAGQAVLKHNQTRQEMTVSFDQI 413


>gi|13540985|ref|NP_110673.1| histidyl-tRNA synthetase [Thermoplasma volcanium GSS1]
 gi|32130137|sp|Q97CE6|SYH_THEVO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|14324369|dbj|BAB59297.1| tRNA synthetase His [Thermoplasma volcanium GSS1]
          Length = 426

 Score = 74.8 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/415 (13%), Positives = 132/415 (31%), Gaps = 36/415 (8%)

Query: 52  NVNAIIRE----EQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMIY 106
            +   I E         G   +  P+L+  DL+  +SG  +    +     DR  + +  
Sbjct: 18  EIEKFIFETASSVAESYGFKRIDFPSLEYIDLYRIKSG--EELLNQTYSFTDRGGREVTL 75

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P        +  S     + + +  +    ++     P+ G  R  E    +A  F  +
Sbjct: 76  IPEATPSTVRMLTSRKDIAKPVRWYSFPKVWRY---EEPQAGRFR--EHYQFNADIFGPS 130

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
            E +      +    L      G  +  +R  S  +  D+ +   +        +     
Sbjct: 131 NEEADAEIISLASGILDGLGLSG--AYEIRVNSRIMMEDILNGMGIADPYTVFSIVDRFH 188

Query: 227 FMDFPIPSENTD-----FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
            +      ++        ++  ++  +  + + P   +    + K+  +     R     
Sbjct: 189 KVSKETFVDDLMSVGLSEENSNTIYRMCSEASEPGGISGLFGSGKVSKAAERLIRTIDIL 248

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY--GIGAMRVVA-AVIESSHDGKGI 338
            E G +      +S+    ++      + Y + G +   +G  R    A + S  D   +
Sbjct: 249 KEYG-VKSVKYDFSIVRGLSYYTGLVFEAYDKSGQFRAILGGGRYDNLAKLFSEQDIPAV 307

Query: 339 IWPDSVAPFKISLINIKAHDQVCRD----------ACEKIY---ARLSKVGCDVFWDDMG 385
            +    A   + L +        +             E+I      L   G  V  + M 
Sbjct: 308 GFGMGDAVISLLLKSKGVKAPHAKKSVYVCRVGTVKAERIASISKMLRSSGFIVSAEIMD 367

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             + SQ   A   G    VI G + + ++ V ++   TG +E ++L +++ +   
Sbjct: 368 RSLSSQLKYASYEGCEYAVIAGERDLENNSVTVRDLSTGEQEIVTLGDLVPFLEK 422


>gi|193214281|ref|YP_001995480.1| seryl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
 gi|238692702|sp|B3QV79|SYS_CHLT3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|193087758|gb|ACF13033.1| seryl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
          Length = 427

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 75/230 (32%), Gaps = 19/230 (8%)

Query: 14  NPRDAEIASHKL-ML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE-EQNRTGAIE 68
            P+D       L ML   R   I     G   ++  G      +   + +    + G  E
Sbjct: 140 KPKDHIELGKSLGMLDFERGAKI--AGAGFPLYIGKGASLERALINFMLDLHLEKHGYKE 197

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P   + D    +G++  +  ++  + D     +   PT E  +T++ R  +   + L
Sbjct: 198 VFPPFFVNRDSLRGTGQWPKFADQVYYMND---DDIYAIPTAEVPVTNMHRDEMLQSKEL 254

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     +   G +R  +F   +   F L           +      +
Sbjct: 255 PIKYAAYSACFRREAGSYGKDTKGFLRVHQFNKVEMVKFVLPETSYDEL-EALLGDAEDV 313

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
              L +    +   SG I  + +     E    A+    +     +F D+
Sbjct: 314 LKALEIPYRVLLLCSGDISANAAKCYDIEVWSPAEEKFLEASSCSNFEDY 363


>gi|320580638|gb|EFW94860.1| Cytoplasmic and mitochondrial glycyl-tRNA synthase [Pichia angusta
           DL-1]
          Length = 650

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             DD    IG ++A  D LG P  + +    + D+ V ++ R + ++   S+++V++   
Sbjct: 566 KVDDSSASIGKRYARNDELGTPFGITIDFDSLKDNSVTLRERDSTLQVRGSIDDVVDAIV 625

Query: 440 HR 441
             
Sbjct: 626 KL 627



 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     N+    R+        +E+    L   ++   SG  D +   M R
Sbjct: 31 SGLYDYGPPGCALQANIVDTWRKHFILEEDMLEVDCTMLTPHEVLKTSGHVDKFADWMCR 90


>gi|282855650|ref|ZP_06264961.1| histidine--tRNA ligase [Pyramidobacter piscolens W5455]
 gi|282586498|gb|EFB91755.1| histidine--tRNA ligase [Pyramidobacter piscolens W5455]
          Length = 423

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/390 (13%), Positives = 102/390 (26%), Gaps = 16/390 (4%)

Query: 63  RTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           R    E+ +P  +  +L+        D   KEM    D+ D+++   P     M   +  
Sbjct: 35  RFNYSEVRLPIFEHTELFSRGVGDTTDIVEKEMYTFTDKGDRSITLRPEMTAGMMRSYVE 94

Query: 121 HIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDLTPEGSKHSYNKMF 178
           H        P   +     FR E   +    R R+F   D       +P           
Sbjct: 95  HSLGVPGGNPAKLWGAGPMFRYERPQKG---RYRQFWQLDYEEIGSESPLVDAEVIMTAI 151

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT- 237
             +  +  R     I       P    +  E ++    G     C               
Sbjct: 152 ELFRTLGMRNLEVVINSVGC--PRCRPVYREKLIGYLQGRCGELCDTCKSRLERNPLRVL 209

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK------RVSARGIEVGHIFYFG 291
           D  +   + +               H + +  +L          +   RG++      F 
Sbjct: 210 DCKEDREIVAGAPDIFDSLCDECAEHFKTVTAALTRLGVKYTLDKTLVRGLDYYTKTAFE 269

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
            K     + +     G+   +     G     V  A               S        
Sbjct: 270 VKSGDLGAQSAVCGGGRYDNLAEAIGGPHVPGVGFAAGLDRVILVMGEQGCSFGAEPALD 329

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
             +   D+  R    ++   L + G     D  G  +  Q   A   G     I+G   +
Sbjct: 330 AYVVCPDETARLDAVELLYALRRAGLKADMDYAGRGMKGQMKTAVASGAKAACILGGDEL 389

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +     ++      +E++ L +V    +  
Sbjct: 390 ARGVAAVRDLSAAAQEEVPLADVPARVASL 419


>gi|288958831|ref|YP_003449172.1| histidyl-tRNA synthetase [Azospirillum sp. B510]
 gi|288911139|dbj|BAI72628.1| histidyl-tRNA synthetase [Azospirillum sp. B510]
          Length = 449

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 128/443 (28%), Gaps = 40/443 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDS----YGK 91
            G    LP  Q A   +   IR    R G + +  P  ++ D L  +SG        + +
Sbjct: 10  PGTMELLPRQQVAFQRMLDTIRRGYERFGFVPVETPVFETVDTLLTKSGGETEKQVYFVQ 69

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
               +   N   +         +      H +     PF  YQIQ  +R E   R    R
Sbjct: 70  STGAIQQGNKPELALRFDLTVPLARYVAEHERD-LAFPFRRYQIQRVYRGERAQRG---R 125

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
            REF   D          + +      V +                    + G L    +
Sbjct: 126 FREFYQCDIDVIGKDGLSAHYDAEIPAVIHHVFSELDFGGFTINVNNRKILLGLLDGLGV 185

Query: 212 VLADT--------------GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
             ADT              G+ +V  S   +     + +T    I    +  E   A  A
Sbjct: 186 ADADTRVLVLREIDKLDKIGQDKVRASLLGLGVTGQAADTILSLIDMKGTNAETLAALGA 245

Query: 258 ATSDVHNEKLF-------------DSLPEN----KRVSARGIEVGHIFYFGTKYSLPMSA 300
              +    +                 +PE         ARG++      + T  +     
Sbjct: 246 LDIENALFREGVGELTTVIEGLNAFQVPEGTVRINLAIARGLDYYTGTVYETFLNDHPGI 305

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               + G+   +           V  ++  +    + +           + I +   D  
Sbjct: 306 GSVCSGGRYENLASHYTKSKLPGVGISIGATRLFYQLMEAGLIKDAAPTAQILVTQMDPA 365

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                 ++ + L   G +      G +I  Q   AD  G P+ +++GS   +     +KH
Sbjct: 366 LSADYFRMASELRAAGINTEIQLDGGKIAKQMKYADRAGIPVVLLMGSDEKARGTATLKH 425

Query: 421 RLTGIREDMSLEEVINYASHRFS 443
            + G + ++ L E+   A     
Sbjct: 426 LVKGEQVEVPLAELAARAKALLE 448


>gi|290992929|ref|XP_002679086.1| predicted protein [Naegleria gruberi]
 gi|284092701|gb|EFC46342.1| predicted protein [Naegleria gruberi]
          Length = 456

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 71/455 (15%), Positives = 132/455 (29%), Gaps = 56/455 (12%)

Query: 39  IYSWLP--LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS--YGKEML 94
           +  +LP     K    +  +  +            P ++   L+  +   D+    KEM 
Sbjct: 1   MADFLPSQFSTKCYSKIIRVGEQTAKTFDYQFAQTPIVEERKLFERTLGADTDIISKEMF 60

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            L+ R+           E    I RS I++  +     Y     FR E   +    R R+
Sbjct: 61  ILSSRDAIEGNKLCLRPEGTAPIMRSVIENALSTKQRIYYYGPMFRYERPQKG---RYRQ 117

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F               +     + ++Y  + + L  ++   + E   IG     E    A
Sbjct: 118 FHQFGVEYLGSD--HYQSDLESLEMAYQFLTNVLDGRNDVFQLEINSIGTLKERENYQHA 175

Query: 215 ------------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                       D  E     S+  ++  I   N      I  +   E + A      D+
Sbjct: 176 LLEYVKKNKELFDQEENLSKDSRARVEIAIAENNPRRIWRILDSKQDEDFIANLIEKHDM 235

Query: 263 HNEKLFDSLPENKRVSA-------------------RGIEV--GHIFYFG--------TK 293
                F S    KR                      RG++      F F         T 
Sbjct: 236 PQLAQFQSEENRKRFENVLLGLKWLKIPYKINSSLIRGLDYYTHTTFEFKSNVIGAKSTI 295

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
            +     T     G +  +    +  G  R+   +I    +           P     + 
Sbjct: 296 LAGGRYDTLSQQLGANQQIPAVGWASGFERLS--LIMEELEKGNTQPQPEYIPKVFVSVV 353

Query: 354 IKAH---DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
              +   DQ        +  +L K G  + + + G  +  Q   A      L +I+G   
Sbjct: 354 RGTNEAIDQEMSKFAIILSQQLRKQGITINYFEKG-NLSKQLKQAQQSKSLLTIIIGEDE 412

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           +   K+ IK+  +G ++ + LE + +       + 
Sbjct: 413 LKGGKISIKNMESGEQKKILLESLTDEIQESLQSY 447


>gi|241852984|ref|XP_002415867.1| glycyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215510081|gb|EEC19534.1| glycyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 389

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 7/134 (5%)

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYA 370
              G  R++ AV E S   +      +      ++  +K      +++       ++I +
Sbjct: 232 PSFGIGRIMYAVFEHSFRVRDGDEQRTYLSLPPAVAPLKCSVLPLSNNPEFAKFVQRISS 291

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDM 429
            L++       DD    IG ++A  D +  P  + V    + +     ++ R +  +   
Sbjct: 292 ALTQHDVPHKVDDSSGSIGRRYARTDEVAVPFGITVDFDTLKEPATATLRERDSMEQVRC 351

Query: 430 SLEEVINYASHRFS 443
            LE++         
Sbjct: 352 PLEDLAPLVQDLVR 365


>gi|90417492|ref|ZP_01225415.1| histidyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
 gi|90330733|gb|EAS46012.1| histidyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
          Length = 424

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 69/444 (15%), Positives = 119/444 (26%), Gaps = 70/444 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        + ++I +   R    E+  P L+  +L+  S G   D   KEM  
Sbjct: 8   GMNDLLPDQSPTWQYLESVIGDVLARYSYREIRFPILEQTELFKRSIGEVTDIVEKEMYT 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRS 152
             DRN  ++   P            +   +  +   +Y     + +   + R R      
Sbjct: 68  FEDRNGDSLSLRPEGTASCVRACNQNGLLHNQIQRLWYTGPMFRHERPQKGRLRQFHQVG 127

Query: 153 REFLMKDAYSFDLT--------------------------PEGSKHSYNKMFVSYLRIFH 186
            E    +    D                                +  Y    V YL   H
Sbjct: 128 VEAFGLNGPDIDAELLLITARLWQALNIDQAVTLQVNSLGTSADRKVYRAALVEYLSARH 187

Query: 187 RLGLKSIPMRAESGPIG--GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
               +    R  S P+      + +   L +                        D    
Sbjct: 188 DQLDEDSQRRLHSNPMRILDSKNADTQALLNDAPVLQDYIDSESKAHFNQLRAMLDAADI 247

Query: 245 LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              I  +        S    E +  SL     V A G   G +   G K           
Sbjct: 248 RYEINPRLVRGLDYYSKTVFEWVTSSLGAQGTVCAGGRYDGLVEQLGGK----------- 296

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                       + +G  R     +    D  G++         + L+ +    Q     
Sbjct: 297 ------PCPGVGFAMGMER-----LVLLLDELGVVPDSVAQTVDLYLVAVGDVGQQALVL 345

Query: 365 CEKIY-----ARLSKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
            E +       RL    G        G    SQ   AD  G  + +I+G    +++KV +
Sbjct: 346 GENLRSHCPTQRLQTNCG--------GGSFKSQMKKADKSGASIALILGEDEAANNKVGV 397

Query: 419 KH-RLTGIREDMSLEEVINYASHR 441
           K  R    +E +  +++ N  +  
Sbjct: 398 KFLRQDRPQETVDQDQLANLINTL 421


>gi|308050456|ref|YP_003914022.1| histidyl-tRNA synthetase [Ferrimonas balearica DSM 9799]
 gi|307632646|gb|ADN76948.1| histidyl-tRNA synthetase [Ferrimonas balearica DSM 9799]
          Length = 425

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/414 (14%), Positives = 110/414 (26%), Gaps = 29/414 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYG 107
              V   +RE     G  E+  P ++   L+  + G   D   KEM    DRN  ++   
Sbjct: 22  WQQVERTLRELVASFGYQEIRTPIVEMTGLFKRAIGEVTDIVEKEMYTFEDRNGDSLTLR 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P            H   Y      +Y +   FR E   +    R R+F       + L  
Sbjct: 82  PEGTASTVRAGNEHGLLYNQEQRLWY-MGPMFRHERPQKG---RYRQFHQFGVEVYGLAT 137

Query: 168 EGSKHSYNKM----FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                    +    +       H     +    A+      D    F+        +   
Sbjct: 138 ADIDAEVLMLSAALWDQLGIRDHVRLELNTLGNADERAAYRDALVVFLEQHKETLDED-S 196

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD-------------S 270
            +     P+   ++   ++ +L +            S  H   L +              
Sbjct: 197 QRRLYTNPLRVLDSKDANVQALLAGAPVLMDYLGDESKQHFNTLCELLRAAGIEFTVNTR 256

Query: 271 LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           L        R +        G++ ++     +    G+       + G         ++ 
Sbjct: 257 LVRGLDYYNRTVFEWVTESLGSQGTVLAGGRYDSLVGQLGGKDTPAVGFAMGMERLVLLL 316

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
            +      +         + L  +    Q       +   + S  G  V     G     
Sbjct: 317 DTLGKFDNLPR----GVDVYLCAMGDGAQAAALQLAQELRQ-SVSGLKVMTHCGGGNFKK 371

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           Q   AD  G  L +I+G   +    V +K    G +  +S + +         N
Sbjct: 372 QMKRADKSGAELALILGEDELKQGLVTVKPLRGGEQRQLSRDALAMELKALVQN 425


>gi|330969069|gb|EGH69135.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 429

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 64/442 (14%), Positives = 116/442 (26%), Gaps = 66/442 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP       +    +    +  G  ++ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRHFEGTVARLLDNYGYRQIRMPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN  ++   P            H  +        + I   FR E   +    R R+F
Sbjct: 70  FADRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQF 126

Query: 156 LMKDAYSFDLTPEGSK---------------------------------HSYNKMFVSYL 182
                  F+L                                         Y +  V YL
Sbjct: 127 HQIGVEVFNLDGPDIDAELIVMTWRLWGLLGIRNAVKLELNSLGTSEARARYREALVEYL 186

Query: 183 RIFHRLGLKSIPMRAESGPIG--GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                   +    R ++ P+        E   +            D             D
Sbjct: 187 SARLDQLDEDSQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRVHFEGLKARLD 246

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  I  +        S    E + D L     V A G   G +   G K +  +  
Sbjct: 247 AAGIPYVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGLVEQMGGKPTAGVGF 306

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                        +        R V   + +  +   +         +  L  +      
Sbjct: 307 AMGIERLVLLLETLEQVPEEIARQVDVYLCAFGEAAELAALALTEKVRDQLPTL------ 360

Query: 361 CRDACEKIYARLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                     RL    G             SQF  AD  G    +I+G + ++   + +K
Sbjct: 361 ----------RLQVNAG--------AGSFKSQFKKADKSGALYALILGEEELAAKVIGVK 402

Query: 420 -HRLTGIREDMSLEEVINYASH 440
             R  G +++++ + +  + + 
Sbjct: 403 PLRGQGEQQNIAWDALSEHLAS 424


>gi|330936983|gb|EGH41081.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 429

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 64/442 (14%), Positives = 116/442 (26%), Gaps = 66/442 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP       +    +    +  G  ++ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRHFEGTVARLLDNYGYRQIRMPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN  ++   P            H  +        + I   FR E   +    R R+F
Sbjct: 70  FADRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQF 126

Query: 156 LMKDAYSFDLTPEGSK---------------------------------HSYNKMFVSYL 182
                  F+L                                         Y +  V YL
Sbjct: 127 HQIGVEVFNLDGPDIDAELIVMTWRLWGLLGIRNAVKLELNSLGTSEGRARYREALVEYL 186

Query: 183 RIFHRLGLKSIPMRAESGPIG--GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                   +    R ++ P+        E   +            D             D
Sbjct: 187 SARLDQLDEDSQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRVHFEGLKARLD 246

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  I  +        S    E + D L     V A G   G +   G K +  +  
Sbjct: 247 AAGIPYVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGLVEQMGGKPTAGVGF 306

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                        +        R V   + +  +   +         +  L  +      
Sbjct: 307 AMGIERLVLLLETLEQVPEEIARQVDVYLCAFGEAAELAALALTEKVRDQLPTL------ 360

Query: 361 CRDACEKIYARLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                     RL    G             SQF  AD  G    +I+G + ++   + +K
Sbjct: 361 ----------RLQVNAG--------AGSFKSQFKKADKSGALYALILGEEELAAKVIGVK 402

Query: 420 -HRLTGIREDMSLEEVINYASH 440
             R  G +++++ + +  + + 
Sbjct: 403 PLRGQGEQQNIAWDALSEHLAS 424


>gi|66044497|ref|YP_234338.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. syringae B728a]
 gi|81308465|sp|Q4ZX22|SYH_PSEU2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|63255204|gb|AAY36300.1| Histidyl-tRNA synthetase, class IIa [Pseudomonas syringae pv.
           syringae B728a]
          Length = 429

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 64/442 (14%), Positives = 116/442 (26%), Gaps = 66/442 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP       +    +    +  G  ++ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRHFEGTVARLLDNYGYRQIRMPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN  ++   P            H  +        + I   FR E   +    R R+F
Sbjct: 70  FADRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQF 126

Query: 156 LMKDAYSFDLTPEGSK---------------------------------HSYNKMFVSYL 182
                  F+L                                         Y +  V YL
Sbjct: 127 HQIGVEVFNLDGPDIDAELIVMTWRLWGLLGIRDAVKLELNSLGTSEARARYREALVEYL 186

Query: 183 RIFHRLGLKSIPMRAESGPIG--GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                   +    R ++ P+        E   +            D             D
Sbjct: 187 SARLDQLDEDSQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRVHFEGLKARLD 246

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  I  +        S    E + D L     V A G   G +   G K +  +  
Sbjct: 247 AAGIPYVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGLVEQMGGKPTAGVGF 306

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                        +        R V   + +  +   +         +  L  +      
Sbjct: 307 AMGIERLVLLLETLEQVPEEIARQVDVYLCAFGEAAELAALALTEKVRDQLPTL------ 360

Query: 361 CRDACEKIYARLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                     RL    G             SQF  AD  G    +I+G + ++   + +K
Sbjct: 361 ----------RLQVNAG--------AGSFKSQFKKADKSGALYALILGEEELAAKVIGVK 402

Query: 420 -HRLTGIREDMSLEEVINYASH 440
             R  G +++++ + +  + + 
Sbjct: 403 PLRGQGEQQNIAWDALSEHLAS 424


>gi|319787421|ref|YP_004146896.1| histidyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465933|gb|ADV27665.1| histidyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
          Length = 477

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 70/473 (14%), Positives = 129/473 (27%), Gaps = 61/473 (12%)

Query: 31  MIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDS 88
           +I   +  G+   LP  Q A   +  +IR    R G + +  P  + +D L  +SG    
Sbjct: 8   LIRPRTPAGVMELLPREQIAFQRMLDVIRRNYERFGFLPVETPVFELSDVLLTKSGGETE 67

Query: 89  YGKEMLRLADRND-----------KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                ++                   M         +        +   + PF  YQ+Q 
Sbjct: 68  RQVYFVQSTGALANAAAEGAAGGLPEMALRFDLTVPLARYVA-EHEHELSFPFRRYQMQR 126

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            +R E   R    R REF   D           +    ++      +F  LG+ +  ++ 
Sbjct: 127 VYRGERAQRG---RFREFYQCDIDVIGKDTLSIR-YDAEVLAVIHSVFSELGIGAFRVQL 182

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSK-DFMDFPIPS---ENTDFDDIISLNSIVEQWT 253
            +  +      E   +AD  +  +   + D +D   P    E     D       V++  
Sbjct: 183 NNRKLMR-GFFEAQGVADPQQQALVLREVDKIDKRGPQYVRETLAGPDFGLPAVAVDRIL 241

Query: 254 APYAATSDVHNEKLFD---------------------------------SLPENKRV--- 277
           A     S  H + L                                    +PE+      
Sbjct: 242 AFVEVRSTSHADALAKIDDVLAEAGDNASDVLRAGAAELREVLELVRALGVPESAYCLNF 301

Query: 278 -SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV-VAAVIESSHDG 335
             ARG++      + T+           + G+   +           V ++  +      
Sbjct: 302 SIARGLDYYTGTVYETQLVEHPGIGSICSGGRYEDLASHYTKSKLPGVGISIGLTRLFWQ 361

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                             +   D+        I   L   G +        +IG QF  A
Sbjct: 362 LREAGLIEGIAESSVQAMVALMDENQLADALDIARHLRLGGINTEVQMEPRKIGKQFQYA 421

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPV 448
              G    V+ G   +    V +K  +   + D+   E+           R +
Sbjct: 422 SRAGIRFVVLAGPDELERGVVAVKDLVREQQFDVPRGELAETLKVELEQARAL 474


>gi|297851408|ref|XP_002893585.1| hypothetical protein ARALYDRAFT_890516 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339427|gb|EFH69844.1| hypothetical protein ARALYDRAFT_890516 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 576

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 95/344 (27%), Gaps = 27/344 (7%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL--MKDAY 161
            +   T + +  +    +  + + LPF   Q+   FR+E+ PR G +R REF     + +
Sbjct: 211 YMRPETAQGIFCNFNELYRYNGKKLPFAAVQVGQAFRNEISPRQGPLRVREFTLAEIEHF 270

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
                    K S        +             +   G               T   + 
Sbjct: 271 IHPGNKSHPKFSRVAKLEFLMFPREEQVSGQSATKLCLGEAVAKG---------TVNNET 321

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                   +   +      D +     +    A YA        +      E   ++ R 
Sbjct: 322 LGYFIGRVYLFLTRLGIDKDRLRFRQHLANEMAHYAVDCWDAEIETSYGWIECVGIADRA 381

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM---GSYGIGAMRVVAAVIESSHDGKGI 338
                           M +  K                   G  R+V  + E        
Sbjct: 382 AYDLRAHSKNVTIQKNMVSISKEKKKVYQGSFTSSVIEPSFGIGRIVYCLCEHCFSTMPS 441

Query: 339 ---------IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                         +   K+ ++     +Q   +    I   L+    D   D  G  IG
Sbjct: 442 KAGDEQLNVFRFPPLVAPKMCMVFPLVKNQQFEETTRLISEELTSCRIDHDIDMKGISIG 501

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            ++  +D LG P  + V S+      V I+ R +  +  +SL+E
Sbjct: 502 KRYVKSDELGVPFAITVDSETP----VTIRERDSKDQVRVSLKE 541


>gi|225873933|ref|YP_002755392.1| histidine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
 gi|225793868|gb|ACO33958.1| histidine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 427

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 60/431 (13%), Positives = 123/431 (28%), Gaps = 44/431 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKE 92
           G    LP   +  + V A  R    R    E+  P  +   L+      E+   D   KE
Sbjct: 9   GTRDLLPPETELWNKVEATARRVFARYNFGEIRTPLFEDTSLFARGVGEET---DIVSKE 65

Query: 93  MLRLADRND------KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           M    DR        +++   P +   +   +  H      +    Y I  +FR E   +
Sbjct: 66  MYTWEDRARAQSEKPQSLTLRPENTAGVVRAYIEHKLGETGMLQKLYYIGPQFRRERPQK 125

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSY--NKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
               R R+F    A        GS+      ++        H LG++   +   S     
Sbjct: 126 G---RYRQFWQIGAEVIGPASAGSESPLRDAEVLEMLAAFLHELGIRDAKLSINSVGSAS 182

Query: 205 DLSHEFIVLAD-----TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           D       L +       +  V C +     P+   +    +   +   + +        
Sbjct: 183 DRPRYVAALREALQDKAPQMCVDCQRRAETNPLRVLDCKVPEDQPIIDALPKIADYLDEE 242

Query: 260 SDVHNEKLF---DSLP---ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHY 311
           S  H   +    D+     E      RG++      F F        +A   G       
Sbjct: 243 SKAHFAAVCAALDACGVAYEVNPRLVRGLDYYTRTTFEFSHGGLGAQNALLGGGRYDGLS 302

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
             +G      +             +      +       +  +    +    A  ++   
Sbjct: 303 EAIGGPKAPGIGFAMGEDRLILTLQAQASEAASTLADAYVAPLG---EGMNAAALRLAHE 359

Query: 372 LSKVGCDVFWDDMGEQIGSQF----AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           L   G  +   D   ++   F     +A  +     ++ G   ++   + +K   +G + 
Sbjct: 360 LRGAGLKIELGDGSFRLKKSFEMGNKLARKI-----ILFGEDELASGMLTVKDFASGEQV 414

Query: 428 DMSLEEVINYA 438
            ++  E+ ++ 
Sbjct: 415 KVARGEIAHFL 425


>gi|170723485|ref|YP_001751173.1| histidyl-tRNA synthetase [Pseudomonas putida W619]
 gi|229558706|sp|B1JDV7|SYH_PSEPW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|169761488|gb|ACA74804.1| histidyl-tRNA synthetase [Pseudomonas putida W619]
          Length = 429

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/426 (13%), Positives = 124/426 (29%), Gaps = 28/426 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP            +    +  G  ++  P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQSPLWRYFEGTVAGLLDTYGYSQIRTPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H  +        + I   FR E RP+ G  R    
Sbjct: 70  FEDRNGDSLTLRPEGTAACVRAVLEHGITGNGQVQKLWYIGQMFRHE-RPQKGRYRQFHQ 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
           +  + ++ D     ++       +  L          +     S       D   EF+  
Sbjct: 129 IGVEVFNLDGPDIDAELIMLTWRLWGLLGIQDAVKLELNSLGTSEARARYRDALVEFL-S 187

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-------- 265
           A   +      +     P+   ++   +  ++     +        S VH E        
Sbjct: 188 ARLEQLDEDSQRRLKSNPLRILDSKDPNTQAVLVGAPKLEDYLDEDSRVHFEGLKARLDA 247

Query: 266 -----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 +   L       ++ +        G + ++     + G   +         G  
Sbjct: 248 AGIPFVINTKLVRGLDYYSKTVFEWVTDKLGAQGTVCAGGRYDGLVEQMGGKPTTGVGFA 307

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCD 378
                  ++  +           +  +  +        +    A  ++   L     G  
Sbjct: 308 MGIERLILLLETLGKVPASINRQIDVYLCAFG------EQAELAGLRLSESLRDRLPGLR 361

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINY 437
           +  +  G    SQF  AD  G    +I+G   ++  ++ +K  R  G +++++ + +  +
Sbjct: 362 LAVNAGGGSFKSQFKKADKSGALFALILGDDELAKQEIGLKPLRGQGEQQNIAWDALAEH 421

Query: 438 ASHRFS 443
                +
Sbjct: 422 LETAIA 427


>gi|24212754|ref|NP_710235.1| histidyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
 gi|32130110|sp|Q8F9Y3|SYH_LEPIN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|24193395|gb|AAN47253.1|AE011197_5 histidyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 439

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/437 (13%), Positives = 134/437 (30%), Gaps = 44/437 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   + P   +  + + +++RE     G  E   P L+S DL+      +   +++    
Sbjct: 15  GTRDFYPEDMRLRNWMFSVMRETVLSFGYEEYDGPILESFDLYKAKSGEEIVERQLYDFI 74

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D+ ++ +   P     +  +   ++++    P  ++ I   +R E   +    R RE   
Sbjct: 75  DKGERRVAIRPEMTPTLARMVAGNLRN-LPKPVRWFSIPNLWRYEQPGKG---RLREHWQ 130

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            +   F +    ++     +  S L+ F           +    +   L +   +  D  
Sbjct: 131 LNVDLFGVDSHRAELEILLIADSILKKFGAPIGSYQIKVSHRKLLDSFLKNSLKLNGDQV 190

Query: 218 ETQVFCSKDFMDFPIPS----ENTDFDDIISLNSIVEQW------TAPYAATSDVHNEKL 267
                           +         ++     S++E +      T       D ++   
Sbjct: 191 HGVSKLLDKKSKISPEAFETEMKPFLNNFKEQFSLIETYLNSNLETVSKIPGIDTNSVSF 250

Query: 268 FDSLPE--NKRVSARGI------------EVGHIFYFGT-----KYSLPMSATFKGADGK 308
             +L +   +    + +              G IF         + SL     +    G 
Sbjct: 251 IQNLFQELGELGIDKQLLFDPSIIRGFDYYTGCIFEVFDTNPENRRSLYGGGRYDNLIGL 310

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
               Q+   G G   V        H+    +  +      I        D+       K+
Sbjct: 311 FSKEQLSGIGFGLGDVTLKNFLEGHNLIPNLSREKTIFLPIM-------DESLFVDTFKL 363

Query: 369 YARLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
              L +     +   D    +IG Q  +A+  G+   + +G   +    V+IK  ++G +
Sbjct: 364 SKELRENEILTETMLD--SAKIGKQIQIAEKKGYRYVLFLGESEIRTETVQIKDLISGEQ 421

Query: 427 EDMSLEEVINYASHRFS 443
           + +  + + +     F 
Sbjct: 422 KSLPRKGLSDTLKKDFQ 438


>gi|261400173|ref|ZP_05986298.1| histidine--tRNA ligase [Neisseria lactamica ATCC 23970]
 gi|269210172|gb|EEZ76627.1| histidine--tRNA ligase [Neisseria lactamica ATCC 23970]
          Length = 431

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/434 (12%), Positives = 112/434 (25%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVNRWTRAYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEAQLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYVENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++   +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVGEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IR 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMQGKHEQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++  ++ +    
Sbjct: 414 QTVAAADLTDTLQQ 427


>gi|1333826|emb|CAA78919.1| histidine--tRNA ligase [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 407

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/399 (14%), Positives = 113/399 (28%), Gaps = 19/399 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V  + RE   +    E+  P  +  ++   S     D   KEM    D+ D+ +   
Sbjct: 1   WQYVEGVARETFKQYHYGEIRTPMFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHITLR 60

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-D 164
           P     +   +  +         P   Y I   FR E        R REF       F  
Sbjct: 61  PEGTAPVVRSYVENKLFAPEVQKPVKLYYIGSMFRYERPQAG---RLREFHQIGVECFGS 117

Query: 165 LTPEGSKHSYNKMFVSYLRIFHR--LGLKSIPMRAESGPIGGDLSHEFIVLA------DT 216
             P     +    +  + R+  +      +    A S         +++         D+
Sbjct: 118 ANPATDVETIAMAYHLFERLGIKGVTLHLNSLGNAASRAAYRQALIDYLSPMRDTLSKDS 177

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                      +D     +     +  S+ +   E+  A + A   +        + +  
Sbjct: 178 QRRLDENPLRVLDSKEKEDKIAVANAPSILDYQDEESQAHFDAVRSMLEALAIPYVIDTN 237

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V         IF F T+           A G+   +     G         +       
Sbjct: 238 MVRGLDYYNHTIFEFITEVDQSELT--ICAGGRYDGLVEYFGGPATPGFGFGLGLERLLL 295

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
                   +   +   + I         A   +   + + G  V  D +G +I +QF  A
Sbjct: 296 ILDKQGVELPVEEGLDVYIAVLGADANVAALALTQAIRRQGFTVERDYLGRKIKAQFKSA 355

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           D     + + +G   +   +  +KH  T     +S +++
Sbjct: 356 DTFKAKVVITLGESEIKAGQAVLKHNQTRQEMTVSFDQI 394


>gi|323127929|gb|ADX25226.1| seryl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 425

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +  +        +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEKSYQELEKMT-ANAENILQKLGLPYRVIALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|322412582|gb|EFY03490.1| seryl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 425

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +  +        +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEKSYQELEKMT-ANAENILQKLGLPYRVIALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|66521713|ref|XP_391940.2| PREDICTED: glycyl-tRNA synthetase [Apis mellifera]
          Length = 740

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 50/137 (36%), Gaps = 8/137 (5%)

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYA 370
              G  R++ A+ E +   +      +       +  +K      + +       +++  
Sbjct: 584 PSFGIGRIMYAIFEHNFKAREGDEKRTYFSLPPVVAPLKCSVLPLSSNNEFVPFVKQLSQ 643

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDM 429
            L+K+      DD    IG ++A  D +  P  + +    +       ++ R +  +  +
Sbjct: 644 NLTKIDVSHKVDDSSGSIGRRYARTDEIAIPFGITIDFDTLKTPHTATLRERDSMGQVRI 703

Query: 430 SLEEVINYASHRFSNNR 446
           +L+++     +  SN +
Sbjct: 704 NLDQIPEVVKN-LSNGK 719


>gi|50365183|ref|YP_053608.1| histidyl-tRNA synthetase [Mesoplasma florum L1]
 gi|81695673|sp|Q6F199|SYH_MESFL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|50363739|gb|AAT75724.1| histidyl-tRNA synthetase [Mesoplasma florum L1]
          Length = 457

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 114/403 (28%), Gaps = 18/403 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
            + V    R+  N     E+  P  +S +L+V       D   KEM    DR  +  +  
Sbjct: 61  WNAVEEKFRKVLNLFNYGEIITPMFESKELFVRGVGDSSDIVSKEMYEFTDRKGREYVLR 120

Query: 108 PTHEEVMTDI-FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P            + +    NLP+  + I   FR E        R R+F      +F + 
Sbjct: 121 PEGTAPTVRALIENKLYIQENLPYKTFYIGPIFRYERPQAG---RYRQFNQLGVETFGID 177

Query: 167 PEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
                    +        +     +        SG    +   E             CS 
Sbjct: 178 SISHDVELISLGQSFLKELKINKDVIVEMNYLISGNERKEYELELKKY--LNLFDDLCSD 235

Query: 226 DFMDFPIPSENTDFDDIISLNS-IVEQWTAPYAATSDVHNEKLFDSLPENKRVSA----- 279
             +             I         + T   +  +     K FD L +    +      
Sbjct: 236 CEIRINKNVLRVLDCKIDGNKFAEAPKMTLFASQENKERLNKTFDQLKQLGIEAKINFNL 295

Query: 280 -RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RG++      F  K      A   G    +   ++G   + A      +          
Sbjct: 296 VRGLDYYTGLVFEFKNIKTDQAIIAGGSYNNLVEELGGPNLPASGFAIGIERIMMILSDQ 355

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
               +        I   + D         + AR + +  D  W+    + G  F  A+ L
Sbjct: 356 EIKVADEDELDLFIIPLSDDAQFLTNKLLLEARTANLKVDTNWNIKNLKAG--FKSAERL 413

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                VI+G   ++     IK + +G  +++  ++++ Y    
Sbjct: 414 KSKNIVIIGENSINSDIYAIKDQKSGETKELKFKDIVKYLKGE 456


>gi|251783202|ref|YP_002997507.1| seryl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391834|dbj|BAH82293.1| seryl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 425

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILQKLGLPYRVIALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|229168072|ref|ZP_04295800.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH621]
 gi|228615316|gb|EEK72413.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH621]
          Length = 431

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 69/427 (16%), Positives = 129/427 (30%), Gaps = 45/427 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 12  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLKDQ 71

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 72  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 126

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      +S  I  +L+ + I+ 
Sbjct: 127 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILQSINIPTELTSDVILS 186

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLP 272
            D  E             +    T        N+++     P A   D  N  L  D + 
Sbjct: 187 LDKIE--KIGIDGVRKDVLERGITVEMADTICNTVLSCLKLPIADFKDTFNNTLVADGVK 244

Query: 273 ENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           E +++       GI    IF       L M                 S G G  R    +
Sbjct: 245 ELQQLQQYLLALGINENTIFNPFLARGLTMYTGTVYEIFLKDGTITSSIGSGG-RYDNII 303

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLSK-- 374
                D              +    +   + +   A            C +I  +L    
Sbjct: 304 GAFRGDNMNYPTVGISFGLDVIYTALSQKETISSTADLFIIPLGTELQCLQIAQQLRSTT 363

Query: 375 -VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +  ++         G +   A    +    P  +I+G + +S   V +++   G    +
Sbjct: 364 SLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTETVVLRNMKEGTEVKI 417

Query: 430 SLEEVIN 436
            L  + N
Sbjct: 418 PLSSLEN 424


>gi|308459706|ref|XP_003092168.1| CRE-GARS-1 protein [Caenorhabditis remanei]
 gi|308254063|gb|EFO98015.1| CRE-GARS-1 protein [Caenorhabditis remanei]
          Length = 742

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 90/310 (29%), Gaps = 20/310 (6%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
              Y         K   +   + + +              ++  +      E +  AD  
Sbjct: 417 LGYYMARCHQFLMKVGVDGRRLRFRQHLSNEMAHYAQDCWDAEILTSYGWIECVGNADRA 476

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE---- 273
              +       +  + +E      I       +   A    +    ++K+  +L +    
Sbjct: 477 CYDLQQHFKATNVKLVAEKKLPQPIDVNVVEAQANMALLGKSFKKDSKKIQTALQQLTSE 536

Query: 274 -----NKRVSARGIEVGHI--FYFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVV 325
                 + + ++ I    I    +     L     +      ++    +     G  R++
Sbjct: 537 QVTALEEELLSKQIYNLDINGENYPLTPDLLNIKKYSKKLHVQEITPSVIEPSYGIGRIM 596

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAH------DQVCRDACEKIYARLSKVGCDV 379
            A++E S   +      +   FK  +  IK        ++      E +   L++     
Sbjct: 597 YALLEHSFRQREGDEQRTFLAFKPLVAPIKCSILPISANETLVPVMEAVKEELARYELSY 656

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINY 437
             DD    IG ++A  D +G P  + V           V I+H  T  +  + + E+   
Sbjct: 657 KVDDSSGTIGRRYARTDEIGIPFGITVDFDSDKTTPHTVTIRHAETMSQIRLPISELGRL 716

Query: 438 ASHRFSNNRP 447
            S   +  + 
Sbjct: 717 ISDLVAGRQQ 726



 Score = 45.9 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 15/109 (13%)

Query: 9   PILQE-----NPRDA---EIASHKLMLRTGMIHQHSK------GIYSWLPLGQKALDNVN 54
             L+E      P++A    +    L+ R     Q         G+Y + P+G     N+ 
Sbjct: 114 RRLEETEIALAPKEASFDRLKLEDLLKRRFFYDQSFAIYGGVTGLYDFGPMGCSLKANML 173

Query: 55  AIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
              R+      G +E+   +L    +   SG  D +   M++     + 
Sbjct: 174 QEWRKHFILEEGMLEVDCTSLTPEPVLKASGHVDRFADWMVKDVKNGEC 222


>gi|110598390|ref|ZP_01386663.1| seryl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
 gi|110339999|gb|EAT58501.1| seryl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
          Length = 429

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 13/214 (6%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
              G  +++  G +    +   + +      G  E+  P   + +    +G++  +  ++
Sbjct: 163 SGAGFPAYMGKGARLERALINFMLDMHTENHGYTEVFPPFFVNRESLRGTGQWPKFADQV 222

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
                  +  +   PT E  +T++ R  +     LP ++      FR E     +   G 
Sbjct: 223 Y---HMQEDDLYAIPTAEVPVTNLHRGEMLDNGALPISYAAYSACFRREAGSYGKDTRGF 279

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +   F   PE S  +  ++  +   I   L +    +   SG I  + +  
Sbjct: 280 LRVHQFNKVEMVKF-TRPEESYEALEQIRRNAEAILIALKIPYRVLLLCSGDISANAAKC 338

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              E    A+    +     +F D+     N  F
Sbjct: 339 YDIEVWSPAEQKYLEASSCSNFEDYQARRANIRF 372


>gi|229179608|ref|ZP_04306959.1| Histidyl-tRNA synthetase 1 [Bacillus cereus 172560W]
 gi|228603811|gb|EEK61281.1| Histidyl-tRNA synthetase 1 [Bacillus cereus 172560W]
          Length = 425

 Score = 74.4 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 69/424 (16%), Positives = 134/424 (31%), Gaps = 35/424 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +                 +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRELALRYDLTIPFAKFVA--MNPNLRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+++ I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFDLFRTLNLEITIQYNNRKLLNGILQAINIPTELTNDVILS 185

Query: 214 ADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            D  E        KD ++  I  E  D      L+ +              +N+ + D +
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADF---KEAFNNQLVADGV 242

Query: 272 PENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            E +++       GI    IF       L M                 S G G  R    
Sbjct: 243 NELQQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGG-RYDNI 301

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLSKV 375
           +     D              +    +   + +   A            C +I  +L   
Sbjct: 302 IGAFRGDSMNYPTVGISFGLDVIYAALSQKETISSTADLFIIPLGTELQCLQIAQQLRST 361

Query: 376 -GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V  +  G ++      A+    P  +IVG + +S + V +++   G    + +  +
Sbjct: 362 TSLKVELELAGRKLKRALNYANKENIPYVLIVGEEELSTNTVVLRNMKEGSEMKVPISSL 421

Query: 435 INYA 438
            +Y 
Sbjct: 422 SSYL 425


>gi|313665223|ref|YP_004047094.1| histidine--tRNA ligase [Mycoplasma leachii PG50]
 gi|312949299|gb|ADR23895.1| histidine--tRNA ligase [Mycoplasma leachii PG50]
          Length = 414

 Score = 74.4 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 63/408 (15%), Positives = 128/408 (31%), Gaps = 24/408 (5%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAM 104
            K    V   +RE  N+    E+  P  +S +L++ S     D   KEM    D+ ++++
Sbjct: 16  TKLWIKVENKLREILNKFNYSEIRTPIFESKELFIRSIGSTSDIVSKEMYEFVDKKNRSL 75

Query: 105 IYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           +  P     +      +     + LPF  Y I   FR E        R R+F       +
Sbjct: 76  VLKPEGTASVVRAVVENKLYAEDYLPFKTYYISPMFRYERPQNG---RYRQFHQLGIEVY 132

Query: 164 DLTPEGSKHSYNKMFVSYLRIFH-RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
                   +    +  + +  F     +K       +G        E        +    
Sbjct: 133 GSDSIQQDYEVLNIANNIINDFKLNKNIKIYTNYLITGKNREQYILELKKYLTDFKLCSD 192

Query: 223 CSKDFMDFPIPSENTDFDDI------ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           C+      P+   +   DD          + + ++    Y  T D+  E    ++ ++K 
Sbjct: 193 CNIRIEKNPLRVLDCKIDDKQFKNVPSMKDFLTDEEQKRYQQTLDLFKEMNILTIHDDKL 252

Query: 277 VSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           V       G IF         + ++     +     +   + + + G G        I  
Sbjct: 253 VRGLDYYTGFIFEIKYESKNIEQTIIAGGRYNNLVYEIGNINLPACGFGMGLERFINIIK 312

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             + +      ++  + I L      DQ      ++I      +G     +     + S 
Sbjct: 313 EQNNELNRNDQNIDLYTICL------DQSAIKLNQQILELSRSIGLISDSNYYNLSLKSA 366

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              +D L     +I+G K  + ++  IK+ +       +L   +N   
Sbjct: 367 LKKSDKLNPKYLIILGEKEATSNQFIIKNEINKTEIKTTLTNFVNDLK 414


>gi|68536122|ref|YP_250827.1| histidyl-tRNA synthetase [Corynebacterium jeikeium K411]
 gi|83305865|sp|Q4JVE8|SYH_CORJK RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|68263721|emb|CAI37209.1| hisS [Corynebacterium jeikeium K411]
          Length = 443

 Score = 74.4 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/419 (11%), Positives = 121/419 (28%), Gaps = 17/419 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+  ++P        V        +  G   + +P  +   L+        D   KEM  
Sbjct: 27  GVPDYVPPTSAEFKAVKDAFTSAAHAAGYEHVELPIFEETSLFARGVGESTDVVSKEMYT 86

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR  +++   P     +      H      LP         FR E        R R+ 
Sbjct: 87  FADRGGRSVTLRPEGTAGVMRAVIEHNLDRGQLPVKLVYNGPFFRYERPQAG---RYRQL 143

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLSHEFIV 212
                 +  +           +           G +         +  P       +F+ 
Sbjct: 144 QQVGVEAIGVDDPALDAEVIALAHRCFSSIGLNGFRLELTSLGDWDDRPAYRQKLQDFLA 203

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                E     ++      +  +  +  ++++   ++    +  +         L D L 
Sbjct: 204 TLPLDEETQRRAQLNPLRVLDDKRPEMQEMLAEAPLMLDHLSDSSREHFETVTGLLDDLG 263

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               ++ R +  G  +Y  T +          +         G       + ++ +    
Sbjct: 264 VGYTINPRMV-RGLDYYTKTCFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQDLSGIGFGL 322

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK----IYARLSKVGCDVF--WDDMGE 386
              + ++  ++      +   +  +        ++    I   L + G      + + G 
Sbjct: 323 GVDRALLALEAEEKRASTGRRVDVYGVALGAEAKRRMVGIVDDLRERGVSADMSYGNRGL 382

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + G+    AD  G    +++G K +++  V +K      + ++ L  V+   + + ++ 
Sbjct: 383 K-GAM-KGADRAGALYALVLGDKELAEGTVTVKDLGAHEQHEVDLAAVVELLAEKTADR 439


>gi|39938569|ref|NP_950335.1| seryl-tRNA synthetase [Onion yellows phytoplasma OY-M]
 gi|67461791|sp|Q6YRD2|SYS_ONYPE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|39721678|dbj|BAD04168.1| seryl-tRNA synthetase [Onion yellows phytoplasma OY-M]
          Length = 424

 Score = 74.4 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 12/205 (5%)

Query: 14  NPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            P+D    + KL +    R   I     G      LG +    +   + +  N+ G  E+
Sbjct: 136 TPKDHVYLAEKLDILDFKRASKI--SGSGFVVCKGLGARLERALIQFMMDLHNKKGYQEI 193

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + +      +G+   +  E+ +L +  +      PT E    ++ R  I     LP
Sbjct: 194 IPPYIINEKSMFATGQLPKFEDEVYKLYNSKNNWY-LNPTAEVPTINLHREEIFKPDTLP 252

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
             +      FR E     +   G+ R  +F  K        P+ S    ++M      + 
Sbjct: 253 IKYVAYTTAFRQEAGSAGKDTRGIFRQHQFN-KVELIQFCHPQNSYECLDQMLKDSEEVL 311

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEF 210
             L L    +   +G +G  ++  +
Sbjct: 312 KLLKLPYRVVLLSTGDLGFSMAKTY 336


>gi|118358180|ref|XP_001012338.1| glycyl-tRNA synthetase family protein [Tetrahymena thermophila]
 gi|89294105|gb|EAR92093.1| glycyl-tRNA synthetase family protein [Tetrahymena thermophila
           SB210]
          Length = 635

 Score = 74.4 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 6/144 (4%)

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK-----GIIWPDSVAPFKISLINIKAH 357
           +    +     +     G  R+ +A++E S   +         P  ++P K S++ + +H
Sbjct: 468 QMQQEEKFVPYVIEPSFGVGRIFSAILEHSFRMRDEKRTFFHLPPKISPIKCSILPVISH 527

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            +   DA  K+   L+KVG     DD G  IG ++A  D LG P  + + +  + D  V 
Sbjct: 528 -EKYNDAIHKLKVGLTKVGVSSKVDDTGHAIGRRYARTDELGIPFGITIDNDTLVDDSVT 586

Query: 418 IKHRLTGIREDMSLEEVINYASHR 441
           ++  LT  +  + + +V    S  
Sbjct: 587 LREILTTKQIRIPINDVFRVVSDL 610



 Score = 48.2 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G    +N+  + RE        +E+S   +    ++  SG  D +   M++
Sbjct: 45  AGLYDYGPPGCAIKNNLLKLWREHFILEEDMLEISSTCITPYPVFKASGHVDRFTDLMVK 104


>gi|313212317|emb|CBY36313.1| unnamed protein product [Oikopleura dioica]
          Length = 673

 Score = 74.4 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 82/289 (28%), Gaps = 19/289 (6%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD---- 229
            +   + + +              +          E +  AD     + C  +       
Sbjct: 366 IDPARMRFRQHMDNEMAHYAKDCWDLECRTSYGWVECVGCADRSCFDLQCHAEASKVNLQ 425

Query: 230 ----FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                P P E   F+ I     I +Q+     A ++         L +      +    G
Sbjct: 426 AERTLPQPIEKEVFEAIPVKKFIAKQFKKDTPAVTEAIQSADASDLEKQFENGEKINLAG 485

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
             F  G K  +    + K    +     +     G  R++ A +E ++D +         
Sbjct: 486 --FEIG-KEMIQFKKSIKKFHTESFTPFVIEPSFGIGRLIYACLEHNYDCREKDVERRFF 542

Query: 346 PFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
                +   K      ++          I A L         D     IG ++A  D + 
Sbjct: 543 TIPPLVAPYKCSVLPISNKPEFDPFISTISAGLKNFSLAHKVDKSSGSIGKRYARTDEIA 602

Query: 400 FPLQVIVGSKFVS--DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            P  V V    V    + V ++ R +  +  + +++  N  +   S  +
Sbjct: 603 VPFGVTVDFHTVKITPATVTLRDRDSLDQIRVPVQDTANLINDMASQRQ 651



 Score = 47.0 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G++ + P+G    +N+  I R         +E+    +  + +   SG    +   M++
Sbjct: 89  AGLFDYGPVGCMLKNNIIDIWRRHFITNDDMLEVECTMMTPSKVLDASGHAQRFADLMVK 148

Query: 96  LADRNDK 102
                D 
Sbjct: 149 DLTNGDC 155


>gi|21911052|ref|NP_665320.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28895262|ref|NP_801612.1| seryl-tRNA synthetase [Streptococcus pyogenes SSI-1]
 gi|30173169|sp|Q8K635|SYS_STRP3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|21905261|gb|AAM80123.1| putative seryl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28810508|dbj|BAC63445.1| putative seryl-tRNA synthetase [Streptococcus pyogenes SSI-1]
          Length = 425

 Score = 74.4 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DTNFVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILQKLGLPYRVISLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|313497223|gb|ADR58589.1| HisS [Pseudomonas putida BIRD-1]
          Length = 429

 Score = 74.4 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/425 (13%), Positives = 122/425 (28%), Gaps = 26/425 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP            +    +  G  ++  P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQSPLWRYFEGTVAGLLDSYGYSQIRTPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H  +        + I   FR E RP+ G  R    
Sbjct: 70  FEDRNGDSLTLRPEGTAACVRAVLEHGITGNGQVQKLWYIGQMFRHE-RPQKGRYRQFHQ 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
           +  + ++ D     ++       +  L          +     S       D   EF+  
Sbjct: 129 IGVEVFNLDGPDIDAELIMLTWRLWGLLGIQDAVKLELNSLGTSEARARYRDALVEFLSA 188

Query: 214 A------------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                         +   ++  SKD     +       +D +   S V          + 
Sbjct: 189 RLEQLDEDSQRRLKSNPLRILDSKDQNTQAVLVGAPKLEDYLDEESRVHFEGLKARLDAA 248

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                +   L       ++ +        G + ++     + G   +         G   
Sbjct: 249 GIPFVINTKLVRGLDYYSKTVFEWVTDKLGAQGTVCAGGRYDGLVEQMGGKPTTGVGFAM 308

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDV 379
                 ++  +           +  +  +        +    A  ++   L     G  +
Sbjct: 309 GIERLILLLETLGKVPESISRQIDVYLCAFG------EQAELAGLRLSEGLRDRLPGLRL 362

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYA 438
             +  G    SQF  AD  G    +I+G   ++  ++ +K  R  G +++++ + +  + 
Sbjct: 363 AVNAGGGSFKSQFKKADKSGALFALILGDDELAKQEIGLKPLRGQGEQQNIAWDALAEHL 422

Query: 439 SHRFS 443
               +
Sbjct: 423 ETAIA 427


>gi|94991059|ref|YP_599159.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
 gi|166223297|sp|Q1JFE4|SYS_STRPD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|94544567|gb|ABF34615.1| Seryl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
          Length = 425

 Score = 74.4 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DTNFVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILQKLGLPYRVISLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|139473237|ref|YP_001127952.1| seryl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|166223299|sp|A2RCY1|SYS_STRPG RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|134271483|emb|CAM29704.1| seryl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
          Length = 425

 Score = 74.4 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DTNFVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F  + E  +        +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKSEESYQELEKMT-ANAENILQKLGLPYRVISLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|26353930|dbj|BAC40595.1| unnamed protein product [Mus musculus]
          Length = 509

 Score = 74.4 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 66/495 (13%), Positives = 133/495 (26%), Gaps = 66/495 (13%)

Query: 11  LQENPRDAEIA----SHKLMLRTGMIHQHSK---------GIYSWLPLGQKALDNVNAII 57
           L+E    AE      +  L L+  +     K         G   + P      + V  +I
Sbjct: 21  LKEQKASAEQIEEEVTKLLKLKAQLGQDEGKQKFVLKTPKGTRDYSPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +    +G+Y    K +  L D+  + +             
Sbjct: 81  IRCFKRHGAEVIDTPVFELKETL--TGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS--FDLTPEGSKHSYN 175
                 +   L         K      P     R REF   D                  
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLK 193

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPI---GGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            M      +     L  +  R     +    G    +F  +  + +     S + +   +
Sbjct: 194 IMCEILSSLQIGNFLVKVNDRRILDGMFAVCGVPDSKFRTICSSVDKLDKVSWEEVKNEM 253

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDV-------HNEKLFDSLPENKRVSARGIEVG 285
             E     ++        Q     +    +        N++  + L + K +    I  G
Sbjct: 254 VGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQAVEGLGDLKLLFEYLILFG 313

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES--SHDGKGIIWPDS 343
                    SL     +      +  +       G   +    I +   +DG   ++   
Sbjct: 314 IDDKISFDLSLARGLDYYTGVIYEAVLLQMPTQAGEEPLGVGSIAAGGRYDGLVGMFDPK 373

Query: 344 VAPFKISLINIKAHD-----QVCRDACE------------------------KIYARLSK 374
                   ++I         +   +A E                        K+ + L  
Sbjct: 374 GRKVPCVGLSIGVERIFSIVEQRLEASEEKVRTTETQVLVASAQKKLLEERLKLVSELWD 433

Query: 375 VGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G           ++ +Q    +  G PL  I+G + + D  V+++   +    D+  E+
Sbjct: 434 AGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVVKLRSVASREEVDVQRED 493

Query: 434 VINYASHRFSNNRPV 448
           ++     R   N+P+
Sbjct: 494 LVEEIRRR--TNQPL 506


>gi|255530089|ref|YP_003090461.1| histidyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
 gi|255343073|gb|ACU02399.1| histidyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
          Length = 462

 Score = 74.4 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 60/198 (30%)

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
             L  I E  T      S +  E       E     ARG+       F  K +     + 
Sbjct: 264 AGLKGIEEIETVFDYVNSMLKAEPAIKPDVELDITLARGLNYYTGCIFEVKTNEVAMGSI 323

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G    D    M          V+   +  +D    +     +    + + I   D+   
Sbjct: 324 GGGGRYDDLTGMFGLKGLTGVGVSFGADRIYDVLQELNLFPESTVAGTKVLISNFDKEAE 383

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           +    +  +L              ++  Q + AD    P  +++GS  +    + +K   
Sbjct: 384 EYALPVLQQLRSANIAAELYPSSAKLKKQMSYADDKHIPYVMLIGSDEMESGMLTLKDMQ 443

Query: 423 TGIREDMSLEEVINYASH 440
           +G ++ ++ E ++     
Sbjct: 444 SGQQQKLTAESIVELLKK 461


>gi|229815949|ref|ZP_04446272.1| hypothetical protein COLINT_03004 [Collinsella intestinalis DSM
           13280]
 gi|229808502|gb|EEP44281.1| hypothetical protein COLINT_03004 [Collinsella intestinalis DSM
           13280]
          Length = 436

 Score = 74.4 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 58/424 (13%), Positives = 117/424 (27%), Gaps = 37/424 (8%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLRLADRNDKAM 104
            +A   +  +  E     G   +  P ++  D++V   G+  D   KEM R+    +   
Sbjct: 17  MRAWQKMQEVAAEVFGPFGFEPIETPAIEQLDVFVHGIGQSTDVVRKEMFRVFSGANFER 76

Query: 105 IYGPTHEE-----------------VMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRF 147
           +     +                  V+  +  +++    + PF  +  +  FR E   + 
Sbjct: 77  VLAEGTDAKLKAKQRLALRPEGTAGVVRAVVENNLVPQGSAPFKAWYAEAMFRGERPQKG 136

Query: 148 GVMRSREFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHR----------LGLKSIPMR 196
              R R+F            P         +   Y R+             +G  +    
Sbjct: 137 ---RLRQFHQVGIEWLGAPDPAADAECIIMLMRFYERLGFDLSQLRLLINSMGDPACRPA 193

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAP 255
                    L HE  +  +  E          D   P  +        +   + ++    
Sbjct: 194 YREAVRQFILDHEDEMCDECRERAELNPLRAFDCKNPHCHEIMQGAPLMPDSLCDECREH 253

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           YA      +      + +   V         +F      +   S    G       ++ G
Sbjct: 254 YAKVKQYLDASGIAYVEDPTLVRGLDYYTRTVFEVEAPGAGVGSIGGGGRYDGLVELEGG 313

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
               G      AV           +   +       + +       RD    +   L   
Sbjct: 314 KPTPGVG---FAVGFERAVLALEAFGKEMDCDADRCVFVANAGADLRDEVFALALELRGR 370

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G     D  G+ + +QF +AD L     VI+G   ++  KV++++  T     +      
Sbjct: 371 GVRTECDYQGKSLKAQFKLADKLNASHIVIIGGDELAAGKVKLRNMATHEESLIERASAA 430

Query: 436 NYAS 439
              +
Sbjct: 431 EVIA 434


>gi|220673116|emb|CAX14534.1| novel protein similar to vertebrate threonyl-tRNA synthetase (Tars)
           [Danio rerio]
          Length = 145

 Score = 74.4 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 56/136 (41%), Gaps = 7/136 (5%)

Query: 304 GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
             D +D  V +    +G++  + A++    +     WP  ++P ++ L+ +    +   +
Sbjct: 1   DGDDRDRPVIIHRAILGSVERMIAILT---ENYAGKWPLWLSPRQVMLVPVNPSLE---E 54

Query: 364 ACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
             +++  R  + G     D D    +  +   A L  +   ++VG K    + V ++ R 
Sbjct: 55  YAKQVCKRFVEAGFMADADLDSSCLLNKKIRNAQLAQYNFILVVGEKERLSNSVNVRTRD 114

Query: 423 TGIREDMSLEEVINYA 438
             +  ++ + EV+   
Sbjct: 115 NKVHGELPVLEVMERL 130


>gi|302148840|pdb|3NET|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
           Sp. Pcc 7120
 gi|302148841|pdb|3NET|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
           Sp. Pcc 7120
          Length = 465

 Score = 74.4 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
            P    ++ +   D++      K+  +L + G +V  +    Q+G QF  AD  G    V
Sbjct: 368 PPTPAQVVVVNXQDELXPTY-LKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCV 426

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           I+G+   +  K  +K   +G + +++L ++      R 
Sbjct: 427 IIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464



 Score = 38.6 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 17/48 (35%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           G   +LP  ++    +   IR      G   +  P ++  ++    G
Sbjct: 16 SGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKG 63


>gi|94989115|ref|YP_597216.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94993007|ref|YP_601106.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|166223295|sp|Q1JA99|SYS_STRPB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166223296|sp|Q1JKF1|SYS_STRPC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|94542623|gb|ABF32672.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94546515|gb|ABF36562.1| Seryl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
          Length = 425

 Score = 74.4 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DTNFVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILQKLGLPYRVISLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|297801992|ref|XP_002868880.1| hypothetical protein ARALYDRAFT_352903 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314716|gb|EFH45139.1| hypothetical protein ARALYDRAFT_352903 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 679

 Score = 74.4 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 86/301 (28%), Gaps = 35/301 (11%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
           K         +         +     +            A S   G  L  E  +     
Sbjct: 379 KAKEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLC-AHSEKSGVSLVAEAKLAEPKE 437

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             ++  +    +  +  +    + + +L ++ EQ      AT +   E  F+     K V
Sbjct: 438 IEKLVITPVKKELGVAFKADQKNVVEALEAMNEQEAMELKATLESKGEAEFEVCTLGKNV 497

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           + +            K  + +S        +     +     G  R++  + E     + 
Sbjct: 498 TIK------------KNMVSISKKRTEVRKRFFTPSVIEPSFGIGRIMYCLYEHCFSTRP 545

Query: 338 IIWPDSVAPFKISLINIKA---------HDQVCRDACEKIYARLSKVGCDVFWDDM---- 384
               D           +            +Q   +A + I  +L   G     +      
Sbjct: 546 SKAGDEQLNVFRFSPLVAPFKCTVLPLVQNQQLEEAAKVISKQLKSDGIKHKIEITVTLK 605

Query: 385 -----GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
                   IG ++A AD LG P  + V S       V I+ R +  +  +SL+EV +  +
Sbjct: 606 QIETISASIGKRYARADELGVPFAITVDSPT----SVTIRERDSRDQVRVSLKEVASVVT 661

Query: 440 H 440
            
Sbjct: 662 S 662


>gi|225550947|ref|ZP_03771896.1| glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
 gi|225380101|gb|EEH02463.1| glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
          Length = 114

 Score = 74.0 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS---KV 416
             ++  E +Y ++  +   V +D+ G  IG ++   D +G    + +    + D      
Sbjct: 20  KLKEKAEVVYNKILDLNISVTFDNSG-SIGKRYRRQDAIGTIYCLTIDFDSLDDQQDPSF 78

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R +  ++ + L E+  Y S +
Sbjct: 79  TIRERNSMAQKRIKLSELSLYLSQK 103


>gi|81428473|ref|YP_395473.1| histidyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
 gi|123755849|sp|Q38XB7|SYH_LACSS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|78610115|emb|CAI55164.1| Histidyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
          Length = 434

 Score = 74.0 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/409 (12%), Positives = 107/409 (26%), Gaps = 15/409 (3%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    R+   R    E+  P  +S D++  S     D   KEM    D+ D+ +   
Sbjct: 20  WQLVEKTARDVFARYQFKEIRTPLFESYDVFSRSSGDTSDIVSKEMYDFMDKGDRHIALR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  +         P+  Y +   FR E        +  +  ++   S   
Sbjct: 80  PEGTAGVVRAFVENKLYGPEHQKPYKVYYMGPMFRYERPQSGRQRQFHQIGVESFGSESP 139

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL-------SHEFIVLADTGE 218
             +    S     +   +I       +    A S     +          E +       
Sbjct: 140 AVDVEVISMAMRLLREFKITDLKLAINTLGDAASRAAYHEALVNYLEPHFEELSDDSKVR 199

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                 +         +    D  + L+ + ++    +     +          + + V 
Sbjct: 200 LHKNPLRVLDSKDAKDQEIVKDAPVILDYLTDEAKVHFNTVKTLLESLNIPYEVDTEMVR 259

Query: 279 ARGIEVGHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                   IF    +   L    T   A G+ + +     G     V   +         
Sbjct: 260 GLDYYNHTIFEIMTSNKVLGRGYTTVLAGGRYNGLVEQLGGPDMPGVGFGLGVERLLLLM 319

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                 +    +    +             +   L + G     D +  +  +QF  A+ 
Sbjct: 320 NAQNSDLVAAPVLDAYVVGIGAETSATTLHLVESLREAGLTADRDYLDRKPKAQFKTANK 379

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI---NYASHRFS 443
           L     V +G   ++D    +K   +G+   + L  +        +   
Sbjct: 380 LNAQFVVTIGESELADKTAHVKDMTSGVEITVPLTTLEADFAAVKNELK 428


>gi|240013745|ref|ZP_04720658.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae DGI18]
 gi|240016183|ref|ZP_04722723.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae FA6140]
 gi|240080327|ref|ZP_04724870.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|240112538|ref|ZP_04727028.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|240117565|ref|ZP_04731627.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|240120815|ref|ZP_04733777.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae PID24-1]
 gi|240123120|ref|ZP_04736076.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|240125371|ref|ZP_04738257.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|254493339|ref|ZP_05106510.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268596473|ref|ZP_06130640.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|268598606|ref|ZP_06132773.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|268603266|ref|ZP_06137433.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268681746|ref|ZP_06148608.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268683973|ref|ZP_06150835.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|293399428|ref|ZP_06643581.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae F62]
 gi|226512379|gb|EEH61724.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268550261|gb|EEZ45280.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|268582737|gb|EEZ47413.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|268587397|gb|EEZ52073.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268622030|gb|EEZ54430.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268624257|gb|EEZ56657.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|291609997|gb|EFF39119.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae F62]
          Length = 431

 Score = 74.0 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 60/434 (13%), Positives = 116/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLPLGQK-------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP+GQK               +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVGQKDFKLTAVFWQAFEDTVNRWTRAYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEAQLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENSRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    ++D  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELADGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + +S  ++ +    
Sbjct: 414 QTVSATDLTDTLQQ 427


>gi|94994938|ref|YP_603036.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
 gi|166223298|sp|Q1J594|SYS_STRPF RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|94548446|gb|ABF38492.1| Seryl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
          Length = 425

 Score = 74.0 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DTNFVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILQKLGLPYRVISLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|71904134|ref|YP_280937.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
 gi|123639382|sp|Q48RS8|SYS_STRPM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|71803229|gb|AAX72582.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
          Length = 425

 Score = 74.0 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DTNFVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILQKLGLPYRVISLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|15675591|ref|NP_269765.1| seryl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71911296|ref|YP_282846.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|306826795|ref|ZP_07460097.1| serine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
 gi|30173206|sp|Q99YE2|SYS_STRP1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|13622796|gb|AAK34486.1| putative seryl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71854078|gb|AAZ52101.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|304431084|gb|EFM34091.1| serine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
          Length = 425

 Score = 74.0 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DTNFVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILQKLGLPYRVISLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|19746699|ref|NP_607835.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|50914823|ref|YP_060795.1| seryl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|30173174|sp|Q8NZN7|SYS_STRP8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|67461685|sp|Q5XAF1|SYS_STRP6 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|19748923|gb|AAL98334.1| putative seryl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|50903897|gb|AAT87612.1| Seryl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
          Length = 425

 Score = 74.0 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DTNFVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILQKLGLPYRVISLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|163784202|ref|ZP_02179133.1| histidyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880530|gb|EDP74103.1| histidyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 409

 Score = 74.0 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 60/406 (14%), Positives = 112/406 (27%), Gaps = 30/406 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              ++ + R+        E+ +P ++   L+  S     D   KEM    DR  + +   
Sbjct: 21  YRYISDVARKIFENYNFEEIILPYVEDISLFKRSVGEATDIVQKEMYVFTDRGGREIALR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         +       ++     +     FR E        R R+F    A  F ++ 
Sbjct: 81  PEGTASTVRAYIEEKMYAQSSIKKLFYEGAMFRYERPQAG---RYRQFHQIGAEIFGVSS 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             +     KM    L          I      E          EF+        +  C+ 
Sbjct: 138 PLADAELIKMVSDILNTLEIPTRLEINTLGNFEDRKNYIKALKEFLEERKQHLCET-CNI 196

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE------NKRVSA 279
                P+   +   +    +       T   +  S    E++ + L              
Sbjct: 197 RIETNPLRVLDCKVETCKDITKEAPLITEFLSDESLERYERIKEYLKALNVEFIENPCLV 256

Query: 280 RGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           RG++     +F F T     + A    A G  +   +   G      +            
Sbjct: 257 RGLDYYTHTVFEFITD---KIGAQGTVAAGGRYDKLVEQLGGPPTPALGFAAGIERLMLL 313

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           +       P  + +   + H+             L               + S+  +A+ 
Sbjct: 314 LEKLPEDRPLIVVIPITEEHNIEGILTA----DLLRSNKFRTELIMKEGSLKSKMKLANK 369

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEEVINYASHRF 442
           LG    V V  K       E+K   TG +E   ++E++I     R 
Sbjct: 370 LGASYVVFVSDK------CELKDMTTGAQEVFENIEDLIEVLKVRL 409


>gi|330950786|gb|EGH51046.1| histidyl-tRNA synthetase [Pseudomonas syringae Cit 7]
          Length = 429

 Score = 74.0 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 64/442 (14%), Positives = 115/442 (26%), Gaps = 66/442 (14%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP       +    +    +  G  ++ +P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQTPLWRHFEGTVARLLDNYGYRQIRMPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADRN  ++   P            H  +        + I   FR E   +    R R+F
Sbjct: 70  FADRNGDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQF 126

Query: 156 LMKDAYSFDLTPEGSK---------------------------------HSYNKMFVSYL 182
                  F+L                                         Y    V YL
Sbjct: 127 HQIGVEVFNLDGPDIDAELIVMTWRLWGLLGIRNAVKLELNSLGTSEARARYRDALVEYL 186

Query: 183 RIFHRLGLKSIPMRAESGPIG--GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                   +    R ++ P+        E   +            D             D
Sbjct: 187 SARLDQLDEDSQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRVHFEGLKARLD 246

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                  I  +        S    E + D L     V A G   G +   G K +  +  
Sbjct: 247 AAGIPYVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGLVEQMGGKPTAGVGF 306

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                        +        R V   + +  +   +         +  L  +      
Sbjct: 307 AMGIERLVLLLETLEQVPEEIARQVDVYLCAFGEAAELAALALTEKVRDQLPTL------ 360

Query: 361 CRDACEKIYARLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                     RL    G             SQF  AD  G    +I+G + ++   + +K
Sbjct: 361 ----------RLQVNAG--------AGSFKSQFKKADKSGALFALILGEEELAAKVIGVK 402

Query: 420 -HRLTGIREDMSLEEVINYASH 440
             R  G +++++ + +  + + 
Sbjct: 403 PLRGQGEQQNIAWDALSEHLAS 424


>gi|332796483|ref|YP_004457983.1| histidyl-tRNA synthetase [Acidianus hospitalis W1]
 gi|332694218|gb|AEE93685.1| histidyl-tRNA synthetase [Acidianus hospitalis W1]
          Length = 426

 Score = 74.0 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/411 (12%), Positives = 114/411 (27%), Gaps = 23/411 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
           +  +     +   ++G +E   P L+  +L+   G  +     M    D+  + +   P 
Sbjct: 21  IRYIEEQFSKIVKKSGYMEAITPILEEFELFALKG-GEELRNTMYTFIDKGGREVALRPE 79

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP---RFGVMRSREFLMKDAYSFDLT 166
               +  +F + ++        +Y   +   DE +    R       E L + + + DL 
Sbjct: 80  FTPSIVRLFLNSMQHLPKPIRLYYIGTVYRYDEPQFGRYREFRQAGIEMLGESSINADLE 139

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                  +               +           +  D     + L D G         
Sbjct: 140 VLSLLWEFFNKINLTNITIKINNIAIYRELFSILKMSEDQEDHLLHLIDKGNKDSVMEYL 199

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
                    N   + + +  S    +       +D H++ L + +    ++     ++  
Sbjct: 200 SNIADSKILNILREMLYNSISKESDFIELIKDMNDEHSKVLENQISRLFKIYEILAKLNV 259

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA-AVIESSHDGKGIIWPDSVA 345
                        A + G   +  +  +     G  R      +        I +   V 
Sbjct: 260 PIKIDLSLV-RGLAYYTGVIFEVTHPSVSFSIAGGGRYDNLVQLYGGPSTPSIGFAIGVE 318

Query: 346 PFKISLINIKAHD-----------QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF-- 392
                L N+K  D           +   D   K+   L +       +     +      
Sbjct: 319 RVLSVLQNLKIKDNARKIAIIPLNENVIDYALKVLFILHENDIPAILNTKNISLSKIIPN 378

Query: 393 -AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               +     + +I+G     ++KV IK   T  +  +SL +++ Y     
Sbjct: 379 LLDMN---INIVIIIGENEKRENKVSIKDLTTRQQSSISLNDLLPYIRQII 426


>gi|118466054|ref|YP_882642.1| histidyl-tRNA synthetase [Mycobacterium avium 104]
 gi|254775907|ref|ZP_05217423.1| histidyl-tRNA synthetase [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|118167341|gb|ABK68238.1| histidyl-tRNA synthetase [Mycobacterium avium 104]
          Length = 420

 Score = 74.0 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 64/399 (16%), Positives = 119/399 (29%), Gaps = 33/399 (8%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G  ++ +P  +   L+        D   KEM   ADR D+++   P     +      H
Sbjct: 35  AGYGDIELPIFEDTALFARGVGESTDVVSKEMYTFADRGDRSVTLRPEGTAGVVRAVIEH 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                 LP         FR E RP+ G  R  +  +         P             +
Sbjct: 95  GLDRGTLPVKLCYAGPFFRYE-RPQAGRYRQLQ-QVGVEAIGVDDPALDAEVIAVADAGF 152

Query: 182 LRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGE----TQVFCSKDFMDFPIPSE 235
             +        I    +    P   +L  +F+   D  E             +D   P  
Sbjct: 153 RSLGLDGFRLEITSLGDDSCRPQYRELLQDFLFGLDLDEETRRRARLNPLRVLDDKRPEV 212

Query: 236 NTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFY---- 289
                D   L   +      +  T   H + L      N R+  RG++      F     
Sbjct: 213 RAMTADAPVLLDHLSDAAKQHFDTVLAHLDALGVPYVINPRM-VRGLDYYTKTTFEFVHD 271

Query: 290 -FGTKYSLPMSATFKGADGK--DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
             G +  +     + G   +     +    +G+G  R + A+                  
Sbjct: 272 GLGAQSGIGGGGRYDGLMRQLGGQDLSGIGFGLGVDRTLLALRAEGKSVGSAARC----- 326

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQV 404
             +  + +    ++       + A L   G  V   +   G + G+    AD  G  + +
Sbjct: 327 -DVFGVPLSDQAKLRLAV---LAAGLRAAGVRVDMAYGARGLK-GAM-RAADRSGARIAL 380

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++G + +    V +K   TG +  + L+ V+     + S
Sbjct: 381 VLGDRDIDAGTVGVKDLQTGSQVSVELDSVVAEVLSQLS 419


>gi|291223042|ref|XP_002731518.1| PREDICTED: histidyl-tRNA synthetase-like [Saccoglossus kowalevskii]
          Length = 503

 Score = 74.0 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 72/492 (14%), Positives = 130/492 (26%), Gaps = 64/492 (13%)

Query: 6   YFLPILQENPRDAEIASHK----LMLRTG-------MIHQHSKGIYSWLPLGQKALDNVN 54
             +  L+E   D +  S +    L L+          I +  KG   + P      + V 
Sbjct: 16  MLVRQLKEEKADKDKISEEVARLLQLKAQLGDGAQKFILKCPKGTRDFDPKQMSVREGVF 75

Query: 55  AIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
             I +   R GA  +  P  +  +    +G+Y    K +  LAD+  + +          
Sbjct: 76  KTIIDSFKRHGAETIDTPVFELKETL--TGKYGEDSKLIYDLADQGGELLSLRYDLTVPF 133

Query: 115 TDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD-LTPEGSKHS 173
                    S             K      P     R REF   D        P      
Sbjct: 134 ARYLAMKKISNIK-----RYHIAKVYRRDNPAMTRGRFREFYQCDFDIAGAYDPMIPDVE 188

Query: 174 YNKMFVSYLRIFH--RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             K+    L         +K    R   G +      E    A            + D  
Sbjct: 189 VLKIVSEILSNLQIGDFEIKVNHRRFLDGMMACCGVPEDKFRAICSSIDKLDKTFWADVR 248

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
               +    D  + +  +E++      T  V   +  ++L +N        E+  +F + 
Sbjct: 249 AEMVDEKGLDPAAADK-IEKYVKLRGRTELVEELQKDENLLKNTDAVEALEEMKVLFKYC 307

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI------------ESSHDGKGII 339
              ++     F  +  +      G    G ++   A                 +DG   +
Sbjct: 308 DIMNITDKVKFDLSLARGLDYYTGLIYEGILKGPEASTPGEAVSVGSVAGGGRYDGLVGM 367

Query: 340 WPDSVAPFKISLINIKAHD--------------------------QVCRDACE---KIYA 370
           +           ++I                                 +D  E   K+  
Sbjct: 368 FDPKGKKVPCVGVSIGIERIFSIMEAKLQAENAVIRTTETQVLVASAQKDLLEERMKLCN 427

Query: 371 RLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            L               +I SQ   A+  G P   I+G   +    V+IK   T    ++
Sbjct: 428 ELWTADIKAEMSYKKNPKILSQLQYAEDSGIPYVAIIGGDEIEKGVVKIKDTSTREEVEI 487

Query: 430 SLEEVINYASHR 441
              E+++    R
Sbjct: 488 PRAELVSEIRKR 499


>gi|239998622|ref|ZP_04718546.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|268594478|ref|ZP_06128645.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|268547867|gb|EEZ43285.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
          Length = 431

 Score = 74.0 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 60/434 (13%), Positives = 116/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLPLGQK-------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP+GQK               +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVGQKDFKLTAVFWQAFEDTVNRWTRAYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEAQLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENSRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYNGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    ++D  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELADGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + +S  ++ +    
Sbjct: 414 QTVSATDLTDTLQQ 427


>gi|114566349|ref|YP_753503.1| histidine--tRNA ligase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318570|sp|Q0AYS2|SYH_SYNWW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|114337284|gb|ABI68132.1| histidyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 422

 Score = 74.0 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 55/435 (12%), Positives = 116/435 (26%), Gaps = 47/435 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GR-YDSYGKEMLR 95
           G Y  LP        +  I+R+     G   +  P  +  +L+    G+  D   KEM  
Sbjct: 8   GTYDILPQDSVKWQYIEKIMRDSAESFGFRAIRTPLFEHTELFQRGVGQGTDIVSKEMYS 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR+ +++   P            H      +P  +Y +   FR +        R R+F
Sbjct: 68  FNDRSQRSLTLRPEGTAPCARALIEHGIYSGVMPVKWYYLGPMFRYDRPQTG---RYRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVL 213
                 +F             + V  L    RLGL    +   S    +  D   + ++ 
Sbjct: 125 HQFGVEAFGSNSPYLDAEIIILLVEIL---RRLGLDDYELHLNSLGCSVCRDDYRQKLLQ 181

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY---AATSDVHNEKLFDS 270
             +   +  C      +           + + +  +  +   Y         H  ++  +
Sbjct: 182 HISPFKEQLCQDCQQRYMQNPLRVLDCKMETCHQAIRGYPIFYDHLCPYCQEHYSRVQAA 241

Query: 271 LPENKRVSA------RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           L  N           RG++      F        + +  G  G+   +     G     +
Sbjct: 242 LQANGISYIHDNNLVRGLDYYSNTAFEIHLPGIGAQSAVGGGGRYDGLVKELGGPDIPGI 301

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD- 383
             A+          +   S        + +   +        ++   L + G     D  
Sbjct: 302 GFALGMERLLLALDMLGKSKFSNPSLDVFVVVMNDAYEMQGLQLVNELRRRGIRADKDYG 361

Query: 384 -MGEQIGSQFAVADLLGFPLQVIVGSKFVS------------DSKVEIKHRLTGIREDMS 430
               +   ++A               K  +                 ++   +  +  + 
Sbjct: 362 GRSGKAQMKYA--------------GKTAARFVVMVGEEEVEKHFWTLRDMQSKEQWQLG 407

Query: 431 LEEVINYASHRFSNN 445
            EE+I+         
Sbjct: 408 QEELISSIRSVIETK 422


>gi|70606470|ref|YP_255340.1| histidyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
 gi|76363438|sp|Q4JAY2|SYH_SULAC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|68567118|gb|AAY80047.1| histidyl tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
          Length = 428

 Score = 74.0 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 57/412 (13%), Positives = 117/412 (28%), Gaps = 28/412 (6%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMIYGPTHE 111
           +    R     +G  E+  P ++   L+  +SG  +   K M    D+ D+ +   P   
Sbjct: 24  IEETFRTVVLNSGYQEVYTPIVEDFKLFSLKSG--EEIRKTMYVFKDKADREVALRPEIT 81

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK 171
             +  ++ + ++        FY  Q+   DE +        +  +     S         
Sbjct: 82  PSIVRVYLNSMQHLPKPLRLFYVGQVYRYDEPQFGRYREFRQAGVELLGSSSSFADIEVI 141

Query: 172 HSYNKMFV----------------SYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFI 211
              N+++                  Y  IF++ G+           I      D   EF 
Sbjct: 142 SLLNEIYDSLGLKDKIIIKINNIGIYREIFNKAGITEEQQEHLLHLIDKGKVDDALKEFT 201

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
                       S  F         +   ++   N  +E      +  S+V  +      
Sbjct: 202 DNNYKDLITYLISLKFDKLESDKLESLRREVSKYNFNLEGEINKLSFISEVLEDLGVKIK 261

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
            +   V       G IF       +    +F  A G  +   +  YG      +   I  
Sbjct: 262 IDLGFVRGLAYYTGVIFE-----VIHPDVSFSIAGGGRYDNLVRLYGGADTPAIGFAIGV 316

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                 I    S    K   +      +       ++   L K       +     +   
Sbjct: 317 ERTALVINKIKSDLQRKKIAVIPLISTKDSLSLAIRLLNILRKNNIIGVLNLKDVPLSKL 376

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                  G+   V++G K + ++ + IK      ++ + LE++ +   +  S
Sbjct: 377 MTYYVEEGYNAIVLIGKKELEENSITIKFLEKREQKTVKLEKIEDVLINNLS 428


>gi|150026060|ref|YP_001296886.1| histidyl-tRNA synthetase [Flavobacterium psychrophilum JIP02/86]
 gi|149772601|emb|CAL44084.1| Histidine--tRNA ligase [Flavobacterium psychrophilum JIP02/86]
          Length = 472

 Score = 74.0 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 1/99 (1%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
                      I +    +  +    K   +L K G  V       +I  QF  A+  G 
Sbjct: 375 FPETVTTTSKAIFLNFGQEETK-YAMKAITQLRKEGIKVELYPDNAKIAKQFQYAEKRGI 433

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            L +IVG+  + +++  +K+ ++G ++ +S +E+ +   
Sbjct: 434 LLAIIVGNDEMQNNQFAVKNLVSGEQQKVSFDELKSLLQ 472


>gi|56807927|ref|ZP_00365750.1| COG0172: Seryl-tRNA synthetase [Streptococcus pyogenes M49 591]
 gi|209559859|ref|YP_002286331.1| seryl-tRNA synthetase [Streptococcus pyogenes NZ131]
 gi|238065107|sp|B5XHX4|SYS_STRPZ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|209541060|gb|ACI61636.1| Seryl-tRNA synthetase [Streptococcus pyogenes NZ131]
          Length = 425

 Score = 74.0 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKNLGARLERALYNFMLDEHIKEGYQEIITPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DTNFVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILQKLGLPYRVISLCTGDMGFSAAKTYDVEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|58617455|ref|YP_196654.1| histidyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
 gi|75507481|sp|Q5FG57|SYH_EHRRG RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|58417067|emb|CAI28180.1| Histidyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
          Length = 414

 Score = 74.0 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 58/414 (14%), Positives = 126/414 (30%), Gaps = 44/414 (10%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLRLADRNDKAMIYGP 108
              +  + +   +R G I +  P ++  +++ + G   D   KEM    D+  + +   P
Sbjct: 23  FQYIQHLAQTIASRYGFIPVDTPIIEFTEVFTKLGNTSDIVTKEMYNFKDKAGEDITLRP 82

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
                +  +  S       +P   +     FR E   +    R R+F   +   F     
Sbjct: 83  EFTSAIVRLLISKNL---TIPVKLFSSGPVFRYERPQKC---RQRQFHQINFEFFGSDSP 136

Query: 169 GSKHSYNKMFVSYLRIFH--RLGLKSIPMRAESGPIGGDLSH--EFIVLADTGETQ---- 220
            +      +  + L            I    +   I     H  E++       ++    
Sbjct: 137 IADVEMISLCYNILSELKLSDRIKLEINFLGDQETINSYKIHLVEYLNKYQKDLSEDSQR 196

Query: 221 --------VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                   +  SK   D  I        D  + NS            +   N  +  ++ 
Sbjct: 197 RLVVNPLRILDSKSPEDCKILLNAPSISDFYTQNSQNFFKEVLDGLDNLSINYVINHNIV 256

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + +        G++ S+     + G           + G  A     + +   
Sbjct: 257 RGLDYYCKTVFEFTTSELGSQNSVIAGGRYDGLVKSMGGHSTPAIGFAAGVERLSALIDY 316

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQ 391
                    +   P +I LI I            K+   L   G  V W++  G  +   
Sbjct: 317 ---------EHKKPKRIVLIPIG---DDATSYAIKLAYELRCKGIHVCWNNYRGTSL--- 361

Query: 392 FAVADLLGFP---LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               +L       + +I G + +  + V++K   TG ++++++ ++++   HR 
Sbjct: 362 --KNELRKANDTDIVLIFGDEELQSNTVKVKDMKTGDQQNVAVCDLLDNLLHRI 413


>gi|229174003|ref|ZP_04301539.1| Histidyl-tRNA synthetase 1 [Bacillus cereus MM3]
 gi|228609335|gb|EEK66621.1| Histidyl-tRNA synthetase 1 [Bacillus cereus MM3]
          Length = 425

 Score = 74.0 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 134/429 (31%), Gaps = 45/429 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ES  I  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILESINIPTELTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT    +  S+N   + +  P  A      
Sbjct: 186 LDKIEKIGIDGVRKDVLERGITEEMADTIYNTVLSCLKLSINDFKDAFNTPLVADGVNEL 245

Query: 265 EKLFDSLP----ENKRVSARGIEVGHIFYFGTKYS---LPMSATFKGADGKDHYVQMGSY 317
           ++L   L         +    +  G   Y GT Y         T     G  +   +G++
Sbjct: 246 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGLITSSIGSGGRYDNIIGAF 305

Query: 318 GIGAMRVVAAVIESSHD-GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-- 374
               M      I    D     +           L  I    ++    C +I  +L    
Sbjct: 306 RGDNMSYPTVGISFGLDVIYTALSQKETVSSTADLFIIPLGTELQ---CLQIAQQLRSTT 362

Query: 375 -VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +  ++         G +   A    +    P  +I+G + +S   V +++   G    +
Sbjct: 363 SLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTETVMLRNMKEGSEVKV 416

Query: 430 SLEEVINYA 438
            L  + NY 
Sbjct: 417 PLSSLSNYL 425


>gi|260911612|ref|ZP_05918197.1| histidine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634318|gb|EEX52423.1| histidine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 456

 Score = 74.0 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 2/159 (1%)

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
             G IF    K     S T  G    +     G  G+  + +             +    
Sbjct: 298 YTGAIFEVKAKDVAIGSIT-GGGRYDNLTGIFGMPGLSGVGISFGADRIYDVLNMLDLYP 356

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
             A     ++ I   +    D C  I +++   G  V       ++  Q A A+  G P 
Sbjct: 357 QNAIQATQVLFINFGEAEA-DYCLPIASQIRAAGISVELYPDCAKMKKQMAYANAKGIPF 415

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            V+ G   ++  KV +K+ LTG ++ +S EE+I   + +
Sbjct: 416 VVLAGESEINLGKVTLKNMLTGDQQLVSTEELIAIITSK 454


>gi|126654004|ref|ZP_01725839.1| histidyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126589521|gb|EAZ83664.1| histidyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 181

 Score = 74.0 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 57/164 (34%), Gaps = 2/164 (1%)

Query: 280 RGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
           RG++      F   +  S   + T     G+ + +     G     +  A+         
Sbjct: 17  RGLDYYNHTTFEIMSTASGFGAITTLCGGGRYNGLVQEIGGPDVPGIGFALSIERLLLAL 76

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                 +       + I A     +    ++ +     G     D +  ++ +Q   AD 
Sbjct: 77  EAEGVELDTASGLDVYIIAMGDGAKQKAVELTSTFRAKGLATEMDYLDRKMKAQMKSADR 136

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           LG    +++G   + +    +KH  +G +  ++  E++NY S +
Sbjct: 137 LGAKYTIVLGETELEEQSAAVKHMESGEQHKVAFSELVNYLSQQ 180


>gi|76664801|emb|CAJ17840.1| prolyl-tRNA synthetase [Candidatus Phytoplasma solani]
          Length = 85

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +K++  L +    +  D   +  G +F+  +L G PL++ +G + ++  +V +  R   
Sbjct: 3   AKKLFDTLKE-NYRIHLDLQDKTPGWKFSQYELKGVPLRIEIGKRDLAQDEVTVFQRYNF 61

Query: 425 IREDMSLEEVINYASHRFSN 444
            +++  +  +          
Sbjct: 62  SKQNFKITTLKQQIPVLLKT 81


>gi|301386122|ref|ZP_07234540.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. tomato Max13]
 gi|302060178|ref|ZP_07251719.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. tomato K40]
 gi|302135121|ref|ZP_07261111.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. tomato NCPPB
           1108]
          Length = 419

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 60/420 (14%), Positives = 127/420 (30%), Gaps = 32/420 (7%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP       +    +    +  G  ++ +P ++  DL+  S G   D   KEM   ADRN
Sbjct: 5   LPEQTPLWRHFEGTVSRLLDNYGYRQIRMPVVEFTDLFKRSIGEVTDIVEKEMYTFADRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P            H  +        + I   FR E   +    R R+F     
Sbjct: 65  GDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQFHQIGV 121

Query: 161 YSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---GPIGGDLSHEFIVLA-- 214
             F+L  P+         +  +  +  R  +K       +        D   EF+     
Sbjct: 122 EVFNLDGPDIDAELIVMTWRLWGMLGIRNAVKLELNSLGTSEARARYRDALVEFLSAHLD 181

Query: 215 ----DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW--TAPYAATSDVHNE--- 265
               D+           +D   P       D   L   ++           + +      
Sbjct: 182 QLDEDSQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRIHFEGLKARLDAAGIP 241

Query: 266 -KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             +   L       ++ +        G + ++     + G    +      + G+G    
Sbjct: 242 YVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGL--VEQMGGKPTAGVGFAMG 299

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +  ++      + +    +           +A +       E++  RL  +   V     
Sbjct: 300 IERLVLLLETLEQVPEEIARQVDVYLCAFGEAAELAALALTEQVRDRLPDLRLQV----- 354

Query: 385 GEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYASH 440
               G   SQF  AD  G    +I+G + ++   + +K  R  G +++++ + +  + + 
Sbjct: 355 NAGAGSFKSQFKKADKSGALYALILGEEELAAKIIGVKPLRGQGEQQNIAWDALSEHLAS 414


>gi|306828941|ref|ZP_07462133.1| serine--tRNA ligase [Streptococcus mitis ATCC 6249]
 gi|304429119|gb|EFM32207.1| serine--tRNA ligase [Streptococcus mitis ATCC 6249]
          Length = 424

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELKDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|254521834|ref|ZP_05133889.1| histidyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
 gi|219719425|gb|EED37950.1| histidyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
          Length = 465

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 75/469 (15%), Positives = 134/469 (28%), Gaps = 60/469 (12%)

Query: 31  MIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDS 88
           MI  +   G    LP  Q A   +  +IR    R G + +  P  + +D L  +SG    
Sbjct: 1   MIKPRTPPGTLELLPREQIAFQRMLDVIRRNYERFGFLPVETPVFELSDVLLTKSGGETE 60

Query: 89  YGKEMLRLA----------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                ++            DR+   M         +        +     PF  YQ+Q  
Sbjct: 61  RQVYFVQSTGALANAAESGDRSLPEMALRFDLTVPLARYVA-EHEHELTFPFRRYQMQRV 119

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           +R E   R    R REF   D           +    ++      +F  L +    ++  
Sbjct: 120 YRGERAQRG---RFREFYQCDIDVIGKDSLSVR-YDAEVLAVIHAVFSELRIGDFSIQLN 175

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS-----ENTDFDDIISLNSIVEQWT 253
           +  +      E + +A+ GE Q+   ++             E    +        VE+  
Sbjct: 176 NRKLMR-GFFESLGVAE-GERQLAVLREVDKLDKRGADYVRETLVGEGFGIPAEQVEKIL 233

Query: 254 APYAATSDVHNEKLFD-------------------------------SLPENKRVSARGI 282
           A  A  S  H + L                                  +PE        I
Sbjct: 234 AFVAVRSQGHADALAQLAALEADAGSSEILRTGVAELREVLQLVQALGVPETAYCLNFSI 293

Query: 283 EVGHIFYFGTKY----SLPMSATFKGADGKDHYVQMGSYGIGAMRV-VAAVIESSHDGKG 337
             G  +Y GT Y    +         + G+   +           V ++  +        
Sbjct: 294 ARGLDYYTGTVYETTLTDHPQIGSICSGGRYEDLASHYSKSKLPGVGISIGLSRLFWQLR 353

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                           +   D+        I  RL   G +       ++IG QF  A  
Sbjct: 354 EAGLIEGIEGSSVQALVALMDEQGMPQSLDIARRLRAGGINTEVQMEPKKIGKQFQYAAK 413

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            G    V+ G   ++   V +K  L   + ++S +E+ +        ++
Sbjct: 414 AGIRFVVLAGEDELARGVVAVKDLLREQQFEVSRDELASTLQVELEQSK 462


>gi|331266974|ref|YP_004326604.1| seryl-tRNA synthetase [Streptococcus oralis Uo5]
 gi|326683646|emb|CBZ01264.1| seryl-tRNA synthetase [Streptococcus oralis Uo5]
          Length = 424

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELKDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|241758676|ref|ZP_04756790.1| histidine--tRNA ligase [Neisseria flavescens SK114]
 gi|241321187|gb|EER57383.1| histidine--tRNA ligase [Neisseria flavescens SK114]
          Length = 458

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 56/447 (12%), Positives = 120/447 (26%), Gaps = 44/447 (9%)

Query: 26  MLRTGMIH-----QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPT 73
             R   I      Q  KG+   LP       L           +       G  ++  P 
Sbjct: 20  DFRLSHIEMAQKIQSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVGRWTRAYGYQQIRTPI 79

Query: 74  LQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           ++   L+V S     D  GKEM   +D ND   +                     N P  
Sbjct: 80  VEQTGLFVRSIGEETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQK 139

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGL 190
            + +   FR E   +    R R+F      +     P+            + ++  R  L
Sbjct: 140 LWYMGPMFRRERPQKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYL 196

Query: 191 KSIPMRA---ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
                     E          E+++  +    +    +     P+   +T   D+  + +
Sbjct: 197 TLEINSLGNREERAAHRAALVEYLIRYEAQLDED-SKRRLKTNPLRVLDTKNPDLQEICN 255

Query: 248 IVEQWTAPYAATSDVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKY 294
              +        S  H  +                 L        + +        G + 
Sbjct: 256 AAPRLVDYLGEASQNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQA 315

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           ++     + G    +      +  IG    +  ++    +   +    +   + +     
Sbjct: 316 TVCGGGRYDGLI--EELGGNPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQG-- 371

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
           +  D             L   G +V      + + +Q   AD  G    +IV    +++ 
Sbjct: 372 EGADLQVMKYA----QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANG 427

Query: 415 KVEIKHRLTG-IREDMSLEEVINYASH 440
            V +K       ++ ++  ++ +    
Sbjct: 428 TVTLKDMQGKHEQQTVAAADLTDTLQQ 454


>gi|327404693|ref|YP_004345531.1| histidyl-tRNA synthetase [Fluviicola taffensis DSM 16823]
 gi|327320201|gb|AEA44693.1| histidyl-tRNA synthetase [Fluviicola taffensis DSM 16823]
          Length = 456

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 37/82 (45%)

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +     C K+  +L + G D        ++  QF  AD        IVG   ++   +++
Sbjct: 375 EKEATYCLKLTKKLRQNGLDCEVYPSVAKMQKQFKYADNRKVKFVAIVGEDELNKGIIQL 434

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           K+  +G +++++  +++ + + 
Sbjct: 435 KNMESGEQKELTESDLLQFFNK 456


>gi|15616899|ref|NP_240112.1| histidyl-tRNA synthetase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219682210|ref|YP_002468594.1| histidyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|11134951|sp|P57375|SYH_BUCAI RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|25293363|pir||F84963 histidine-tRNA ligase (EC 6.1.1.21) [imported] - Buchnera sp.
           (strain APS)
 gi|10038963|dbj|BAB12998.1| histidyl-tRNA synthetase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219621943|gb|ACL30099.1| histidyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311086025|gb|ADP66107.1| histidyl-tRNA synthetase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086599|gb|ADP66680.1| histidyl-tRNA synthetase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087182|gb|ADP67262.1| histidyl-tRNA synthetase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 423

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 59/424 (13%), Positives = 128/424 (30%), Gaps = 28/424 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+Y + P   K  + +  I +E  N    +E+ +P L+  +++  + G   D   KEM  
Sbjct: 10  GMYDYFPKDLKIWNYIEIIFKEVLNSYCYLEIRLPILEKTEIFKRAIGNVTDVVEKEMYS 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR    +   P            +          F+ +   FR E   +    R R+F
Sbjct: 70  FNDRKGNNLTLRPEGTVGCVRAIIQNNL--LQKSNKFWYLGPMFRYERPQKG---RYRQF 124

Query: 156 LMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
               A  F L   +            + RI     +        S         E +   
Sbjct: 125 YQLGAEVFGLDTEDIDLEIIILTNRLWKRIGIDSFITLEVNSIGSKIDRVQYKKELVNFL 184

Query: 215 DTGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
              E  +   C +     P+   ++   DI +L       +   + + + H + L + + 
Sbjct: 185 KKREYLLDEDCKRRLYTNPLRILDSKNQDIQNLLKEAPLLSEYISFSENNHFKNLCNMMN 244

Query: 273 ------ENKRVSARGIEV--GHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                 +      RG++     +F       G + ++     +     +    +  + G 
Sbjct: 245 HHGIKYKCNPHLVRGLDYYNSTVFEWKSNKLGAQNTICAGGRYDSLVQEMGGRKTPAIGF 304

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                   ++  S      +  +S         N K H     +    +Y +L      +
Sbjct: 305 AIGIERLVLLVKSLKIFSEVIEESNVYIIFIGDNNKCHAINLSEEIRDLYPKL-----RI 359

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           F + + + +  +   A      + +++G   +      +K         +  +E+I    
Sbjct: 360 FINFLHQNLTKKIKNAISSLARIIILIGDNEIKKGFFLVKDLKEKKEYHLLKKELILKIQ 419

Query: 440 HRFS 443
             F 
Sbjct: 420 EIFK 423


>gi|313884096|ref|ZP_07817862.1| histidine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620543|gb|EFR31966.1| histidine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 439

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 61/410 (14%), Positives = 116/410 (28%), Gaps = 21/410 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRL 96
           + +W          V    R         EM  P +++ +L+  S     D   KEM   
Sbjct: 16  MPTWH--------YVEDTARTIFEAYNFKEMRTPMIENFELFSRSVGESTDIVSKEMYDF 67

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            D+  + +   P     +   F  H         P+  Y I   FR E        +  +
Sbjct: 68  EDKGGRRIALRPEGTAPVVRAFVEHKLFGPEYPQPYKAYYIGPMFRYERPQAGRQRQFHQ 127

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMF------VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             M+   S +   +    +            +     + LG     M      I     H
Sbjct: 128 IGMEVFGSSNPATDAEGIAMAWDLLSELGLENLTIHLNSLGKTPERMAYRQALIDYFTPH 187

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
              +  D+           +D   P +     D  ++   + + +  +      +   L 
Sbjct: 188 LAELSEDSQRRLHDNPLRVLDSKDPKDKVFVKDAPTILDYLSEESKAHFQAVQNYLTDLE 247

Query: 269 DSLPENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                N  V  RG++     IF    +     + +     G+   +     G        
Sbjct: 248 IPFQINPYV-VRGLDYYQDTIFEIMVEDESIGAQSTVAGGGRYDGLVQELGGPEVPGFGF 306

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A+               +       + +   D        ++     + G     D M  
Sbjct: 307 ALGVERLILVMEHQAVEIPAEDGLDLFVLLADPEANSLALQVLQAARQDGLIADRDFMNR 366

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
            + SQF  A      L   +G   V+   + +K++ TG   + SL+E+I 
Sbjct: 367 SLKSQFKTAAKNNASLVTTLGGDEVASKMIRLKNQETGKEAEFSLDELIE 416


>gi|229060917|ref|ZP_04198272.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH603]
 gi|228718564|gb|EEL70196.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH603]
          Length = 431

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 69/427 (16%), Positives = 127/427 (29%), Gaps = 45/427 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 12  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEISKEIYTLKDQ 71

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 72  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 126

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      +S  I  +L+ + I+ 
Sbjct: 127 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILQSINIPTELTSDVILS 186

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLP 272
            D  E             +    T        N+++     P A   D  N  L  D + 
Sbjct: 187 LDKIE--KIGIDGVRKDVLERGITVEMADTICNTVLSCLKLPIADFKDTFNNTLVADGVE 244

Query: 273 ENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           E +++       GI    IF       L M                 S G G  R    +
Sbjct: 245 ELQQLQQYLLALGINENTIFNPFLARGLTMYTGTVYEIFLKDGTITSSIGSGG-RYDNII 303

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLSK-- 374
                D              +    +         A            C +I  +L    
Sbjct: 304 GAFRGDNMNYPTVGISFGLDVIYTALSQKATTSSTADLFIIPLGTELQCLQIAQQLRSTT 363

Query: 375 -VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +  ++         G +   A    +    P  +I+G + +S   V +++   G    +
Sbjct: 364 SLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTETVVLRNMKEGTEVKI 417

Query: 430 SLEEVIN 436
            L  + N
Sbjct: 418 PLSSLEN 424


>gi|313229967|emb|CBY07672.1| unnamed protein product [Oikopleura dioica]
          Length = 673

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 82/289 (28%), Gaps = 19/289 (6%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD---- 229
            +   + + +              +          E +  AD     + C  +       
Sbjct: 366 IDPARMRFRQHMDNEMAHYAKDCWDLECRTSYGWVECVGCADRSCFDLQCHAEASKVNLQ 425

Query: 230 ----FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVG 285
                P P E   F+ I     I +Q+     A ++         L +      +    G
Sbjct: 426 AERTLPQPIEKEVFEAIPVKKFIAKQFKKDTPAVTEAIQSADASDLEKQFENGEKINLAG 485

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
             F  G K  +    + K    +     +     G  R++ A +E ++D +         
Sbjct: 486 --FEIG-KEMIQFKKSIKKFHTESFTPFVIEPSFGIGRLIYACLEHNYDCREKDVERRFF 542

Query: 346 PFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
                +   K      ++          I A L         D     IG ++A  D + 
Sbjct: 543 TIPPLVAPYKCSVLPISNKPEFDPFISTISAGLKNFTLAHKVDKSSGSIGKRYARTDEIA 602

Query: 400 FPLQVIVGSKFVS--DSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
            P  V V    V    + V ++ R +  +  + +++  N  +   S  +
Sbjct: 603 VPFGVTVDFHTVKITPATVTLRDRDSLDQIRVPVQDTANLINDMASQRQ 651



 Score = 48.2 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G++ + P+G    +N+  I R         +E+    +  + +   SG    +   M++
Sbjct: 89  AGLFDYGPVGCMLKNNIIDIWRRHFIMNDDMLEVECTMMTPSKVLEASGHAQRFADLMVK 148

Query: 96  LADRNDK 102
                D 
Sbjct: 149 DLTNGDC 155


>gi|304387837|ref|ZP_07370011.1| histidine--tRNA ligase [Neisseria meningitidis ATCC 13091]
 gi|304338102|gb|EFM04238.1| histidine--tRNA ligase [Neisseria meningitidis ATCC 13091]
          Length = 431

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 55/434 (12%), Positives = 112/434 (25%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVGRWTRAYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEDKLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++   +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVGEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IR 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMQGKHEQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++  ++ +    
Sbjct: 414 QTVAAADLTDTLQQ 427


>gi|206968745|ref|ZP_03229700.1| histidyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|206735786|gb|EDZ52944.1| histidyl-tRNA synthetase [Bacillus cereus AH1134]
          Length = 426

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 130/424 (30%), Gaps = 35/424 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 12  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 71

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 72  GKRELALRYDLTIPFAKVVA--MNPNLRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 126

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++       F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 127 VDIVGVESVMAEAELMGMAFELFRTLNLEITIQYNNRKLLNGILQAINIPTELTSDVILS 186

Query: 214 ADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            D  E        KD ++  I  E  D      L+ +              +N  + D +
Sbjct: 187 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADF---KETFNNPLVADGV 243

Query: 272 PENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            E +++       GI    IF       L M                 S G G  R    
Sbjct: 244 NELQQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGG-RYDNI 302

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLSKV 375
           +     D              +    +   + +   A            C +I  +L   
Sbjct: 303 IGAFRGDNINYPTVGISFGLDVIYTALSQKETISSTADLFIIPLGTELQCLQIAQQLRST 362

Query: 376 -GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V  +  G ++      A+    P  +I+G   +S   V +++   G    + +  +
Sbjct: 363 TSLKVELELAGRKLKRALNYANKENIPYVLIIGEDELSTETVMLRNMKEGSEVKVPISSL 422

Query: 435 INYA 438
            +Y 
Sbjct: 423 SSYL 426


>gi|317122078|ref|YP_004102081.1| histidyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
 gi|315592058|gb|ADU51354.1| histidyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
          Length = 453

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 61/412 (14%), Positives = 116/412 (28%), Gaps = 32/412 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y   P        + A IR+   R G  E+  P +++ +L+  +     D   KEM  
Sbjct: 9   GTYDVTPQEAPRWQALEARIRDVAARFGFGELRTPVIEARELFQRTVGETTDIVQKEMYV 68

Query: 96  LADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           L    +D+ ++  P         +  +       P   + IQ  FR E        R R+
Sbjct: 69  LTPPGSDRQLVLRPEGTAAAVRAYLENGLHNGPQPVKLFYIQPMFRHERPQAG---RYRQ 125

Query: 155 FLMKDAYSFDLTPEGSKHSY---------NKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
            +      F      +                        + +G      R     +   
Sbjct: 126 HVQFGVEIFGAGEATADAEIIALAVTLFAELGLEGLEVHLNSIGCPVCRPRYRQALLEYY 185

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSE--------NTDFDDIISLNSIVEQWTAPYA 257
                 + +D            +D  +P++         T      +     +Q  A  A
Sbjct: 186 RPRAAELCSDCRARLETNPLRLLDCKVPADQPHKAGAPRTVDYLCDACRDHFDQLQAALA 245

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
           A    +  +L   L        R +        G + ++     + G             
Sbjct: 246 ALGIAY--RLDSGLVRGLDYYTRTVFEIKYGGLGAQDTVCGGGRYDGLIELLGGPPTPGV 303

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G G       +   +            A   ++        QV R     +   L + G 
Sbjct: 304 GFGMGLERLLLTLEALGRVPGAARPLHAFVAVTG-------QVPRARVLALVQDLRRAGL 356

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            V  D +G  + +Q   A  L     VI+G +  +  +  ++H  +G +  +
Sbjct: 357 AVDMDHVGRSLKAQLRAAARLPVRYAVILGDEEWAAGQATVRHLESGAQRRV 408


>gi|126460233|ref|YP_001056511.1| glycyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
 gi|126249954|gb|ABO09045.1| glycyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
          Length = 588

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 6/150 (4%)

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK----GIIWPDSVAPF 347
           T+  + + A  +  D +     +     G  R++  V+E +   +     +  P  +AP 
Sbjct: 419 TREMVFIKAEKRRTDLEKFIPHVVEPSFGLDRILYVVLEHAVAEEGGRVYLRLPPDIAPV 478

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
            + ++ I   +       +++   L+  G  V +DD G  IGS++A  D +G PL V + 
Sbjct: 479 TLCILPIVKREDYV-AIGKRLMRELASEGFLVHYDDEG-TIGSRYAACDEVGTPLAVTID 536

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +   D  V I+ R T  +  +   +V  +
Sbjct: 537 ERTPVDGTVTIRDRDTRRQVRVKTSDVARF 566



 Score = 53.6 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 38 GIYSWLPLGQKALDNVNAIIREEQNRTGAI----EMSVPTLQSADLWVESGRYDSYGKEM 93
          G Y + PLG +   N+    R             E+  P +    ++  SG  D +   +
Sbjct: 32 GFYDFGPLGVQIRRNIVEKWRRTFV-LPYQDFIVEVETPIIMPEPVFKASGHLDHFTDYV 90

Query: 94 LRLADR 99
          +  +  
Sbjct: 91 VTCSKC 96


>gi|26987590|ref|NP_743015.1| histidyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|148546128|ref|YP_001266230.1| histidyl-tRNA synthetase [Pseudomonas putida F1]
 gi|167031912|ref|YP_001667143.1| histidyl-tRNA synthetase [Pseudomonas putida GB-1]
 gi|32130097|sp|Q88PJ6|SYH_PSEPK RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|166228599|sp|A5VYT6|SYH_PSEP1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189082305|sp|B0KPI8|SYH_PSEPG RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|24982266|gb|AAN66479.1|AE016276_14 histidyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|148510186|gb|ABQ77046.1| histidyl-tRNA synthetase [Pseudomonas putida F1]
 gi|166858400|gb|ABY96807.1| histidyl-tRNA synthetase [Pseudomonas putida GB-1]
          Length = 429

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 56/425 (13%), Positives = 122/425 (28%), Gaps = 26/425 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP            +    +  G  ++  P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQSPLWRYFEGTVAGLLDTYGYSQIRTPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H  +        + I   FR E RP+ G  R    
Sbjct: 70  FEDRNGDSLTLRPEGTAACVRAVLEHGITGNGQVQKLWYIGQMFRHE-RPQKGRYRQFHQ 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
           +  + ++ D     ++       +  L          +     S       D   EF+  
Sbjct: 129 IGVEVFNLDGPDIDAELIMLTWRLWGLLGIQDAVKLELNSLGTSEARARYRDALVEFLSA 188

Query: 214 A------------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                         +   ++  SKD     +       +D +   S V          + 
Sbjct: 189 RLEQLDEDSQRRLKSNPLRILDSKDQNTQAVLVGAPKLEDYLDEESRVHFEGLKARLDAA 248

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                +   L       ++ +        G + ++     + G   +         G   
Sbjct: 249 GIPFVINTKLVRGLDYYSKTVFEWVTDKLGAQGTVCAGGRYDGLVEQMGGKPTTGVGFAM 308

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDV 379
                 ++  +           +  +  +        +    A  ++   L     G  +
Sbjct: 309 GIERLILLLETLGKVPESISRQIDVYLCAFG------EQAELAGLRLSEGLRDRLPGLRL 362

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYA 438
             +  G    SQF  AD  G    +I+G   ++  ++ +K  R  G +++++ + +  + 
Sbjct: 363 AVNAGGGSFKSQFKKADKSGALFALILGDDELAKQEIGLKPLRGQGEQQNIAWDALAEHL 422

Query: 439 SHRFS 443
               +
Sbjct: 423 ETAIA 427


>gi|240127823|ref|ZP_04740484.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|268686218|ref|ZP_06153080.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|268626502|gb|EEZ58902.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
          Length = 431

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 63/429 (14%), Positives = 120/429 (27%), Gaps = 29/429 (6%)

Query: 34  QHSKGIYSWLPLGQK-------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP+GQK               +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVGQKDFKLTAVFWQAFEDTVNRWTRAYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEAQLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF--------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
             H  +            +  ++ V         +F   T   L   AT  G  G  +  
Sbjct: 242 QNHYARFKAMLDGLGIQYIENSRLVRGLDYYNQTVFE-WTTDKLGAQATVCG--GGRYDG 298

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
            +   G      +   +        +    S+       +      +       K    L
Sbjct: 299 LIEELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGEGADLQVMKYVQAL 358

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSL 431
              G +V      + + +Q   AD  G    +IV    ++D  V +K       ++ +S 
Sbjct: 359 RAQGFNVIQHSGYQSLKAQMKKADNSGARFALIVAQDELADGTVTLKDMNGAHGQQTVSA 418

Query: 432 EEVINYASH 440
            ++ +    
Sbjct: 419 TDLTDTLQQ 427


>gi|281357087|ref|ZP_06243577.1| histidyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
 gi|281316645|gb|EFB00669.1| histidyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
          Length = 426

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 53/422 (12%), Positives = 118/422 (27%), Gaps = 29/422 (6%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEML 94
            G     P   +   N+ A      +R G  E+  P  +  +++        +   KEM 
Sbjct: 8   PGTADIFPEEARRWRNLEAAAGTVFSRYGYGELRTPIFEYTEVFQRGLGDETEVVQKEMY 67

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              DR  +++   P     +     +       +    Y     FR E        +  +
Sbjct: 68  TFLDRGGRSLTLRPEGTAGVMRALSNTDV-LNGVEQRVYYHGPMFRGERPAAGRRRQFHQ 126

Query: 155 FLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
             +++      L          +          +L + +  +  + GP G  L   F   
Sbjct: 127 IGVENVGRIAPLIDAECIAMLMEFLREIGIPDAKLSINTRGVMPDRGPAGQLLRDYF--G 184

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-- 271
           +   E    C            +   +      +    + A ++A S  + +++  +L  
Sbjct: 185 SRIHEMCDDCKARLERNVWRILDCKQEACRKFVADAPDYVASFSAESRAYFDEVKAALTA 244

Query: 272 ------PENKRVSARGIEVGHIFY-----FGTKYSLPMSATF-KGADGKDHYVQMGSYGI 319
                  +   V      V  +F       G + ++     +     G++  VQ   +  
Sbjct: 245 LGVEYTVDPLLVRGLDYYVHTVFEVTHTGLGAQTAIAGGGRYELFLPGQNRPVQGVGFAA 304

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R++        +                 + +       R A  K+   L + G  V
Sbjct: 305 GMERLLMVQDALKVNPAKEEPTP---------VYLVGLGAAARMANLKLAGELRRAGMKV 355

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             +       +Q   A+  G    V+ G   +      +K    G + ++    + +   
Sbjct: 356 ALELEERSFKAQLRSANKAGASFTVVRGEAELEKKIAMVKTMADGSQSEVPEAGLFDTLL 415

Query: 440 HR 441
             
Sbjct: 416 KL 417


>gi|294933252|ref|XP_002780668.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239890613|gb|EER12463.1| prolyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 71

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 367 KIYARLSKVGCDVFWDD-MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           ++   L   G     DD   ++ G +F   DL G PL + +GS+ V  + V + +R TG 
Sbjct: 1   ELRDILLNDGARCVLDDDRKKRPGFKFTKWDLQGVPLSIRIGSREVETNTVTLAYRHTGE 60

Query: 426 RED 428
           + +
Sbjct: 61  KVN 63


>gi|319951616|ref|YP_004162883.1| histidyl-tRNA synthetase [Cellulophaga algicola DSM 14237]
 gi|319420276|gb|ADV47385.1| histidyl-tRNA synthetase [Cellulophaga algicola DSM 14237]
          Length = 458

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 40/101 (39%), Gaps = 1/101 (0%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
                   + ++ +   DQ    A  K+   L K G          ++  Q   A+    
Sbjct: 359 FPEAIDQSLQVLCVNFGDQEAL-AALKLVTNLRKQGVKADVYPNSAKMQKQMKYANNRNV 417

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           P  +++G + ++++   +K+   G +E  SL++V  +  + 
Sbjct: 418 PFVILIGDEELANNSFVVKNMKEGSQETYSLDKVAEFVKNL 458


>gi|289677945|ref|ZP_06498835.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
 gi|302185744|ref|ZP_07262417.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. syringae 642]
          Length = 419

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 63/437 (14%), Positives = 113/437 (25%), Gaps = 66/437 (15%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP       +    +    +  G  ++ +P ++  +L+  S G   D   KEM   ADRN
Sbjct: 5   LPEQTPLWRHFEGTVARLLDNYGYRQIRMPIVEFTELFKRSIGEVTDIVEKEMYTFADRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P            H  +        + I   FR E   +    R R+F     
Sbjct: 65  GDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQFHQIGV 121

Query: 161 YSFDLTPEGSK---------------------------------HSYNKMFVSYLRIFHR 187
             F+L                                         Y    V YL     
Sbjct: 122 EVFNLDGPDIDAELIVMTWRLWGLLGIRNAVKLELNSLGTSEARARYRDALVEYLSARLD 181

Query: 188 LGLKSIPMRAESGPIG--GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              +    R ++ P+        E   +            D             D     
Sbjct: 182 QLDEDSQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRVHFEGLKARLDAAGIP 241

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             I  +        S    E + D L     V A G   G +   G K +  +       
Sbjct: 242 YVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGLVEQMGGKPTAGVGFAMGIE 301

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                   +        R V   + +  +   +         +  L  +           
Sbjct: 302 RLVLLLETLEQVPEEIARQVDVYLCAFGEAAELAALALTEKVRDQLPTL----------- 350

Query: 366 EKIYARLS-KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLT 423
                RL    G             SQF  AD  G    +I+G + ++   + +K  R  
Sbjct: 351 -----RLQVNAG--------AGSFKSQFKKADKSGALYALILGEEELAAKVIGVKPLRGQ 397

Query: 424 GIREDMSLEEVINYASH 440
           G +++++ + +  + + 
Sbjct: 398 GEQQNIAWDALSEHLAS 414


>gi|163940978|ref|YP_001645862.1| histidyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|163863175|gb|ABY44234.1| histidyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
          Length = 431

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 69/427 (16%), Positives = 128/427 (29%), Gaps = 45/427 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 12  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLKDQ 71

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 72  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 126

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      +S  I  +L+ + I+ 
Sbjct: 127 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILQSINIPTELTSDVILS 186

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLP 272
            D  E             +    T        N+++     P A   D  N  L  D + 
Sbjct: 187 LDKIE--KIGIDGVRKDVLERGITVEMADTICNTVLSCLKLPIADFKDTFNNTLVADGVE 244

Query: 273 ENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           E +++       GI    IF       L M           +     S G G  R    +
Sbjct: 245 ELQQLQQYLLALGINENTIFNPFLARGLTMYTGTVYEIFLKNGTITSSIGSGG-RYDNII 303

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLSK-- 374
                D              +    +         A            C +I  +L    
Sbjct: 304 GAFRGDNMNYPTVGISFGLDVIYTALSQKTTTSSTADLFIIPLGTELQCLQIAQQLRSTT 363

Query: 375 -VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +  ++         G +   A    +    P  +I+G + +S   V +++   G    +
Sbjct: 364 SLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTETVVLRNMKEGTEVKI 417

Query: 430 SLEEVIN 436
            L  + N
Sbjct: 418 PLSSLEN 424


>gi|306830557|ref|ZP_07463724.1| serine--tRNA ligase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304427275|gb|EFM30380.1| serine--tRNA ligase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 425

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DSDYVLIPTAEVPLTNYYRGEILDGKELPVYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F            KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFSKPETSYDEL-EKMVANAENILQKLGLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|293364834|ref|ZP_06611551.1| serine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307703083|ref|ZP_07640030.1| seryl-tRNA synthetase [Streptococcus oralis ATCC 35037]
 gi|291316284|gb|EFE56720.1| serine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307623476|gb|EFO02466.1| seryl-tRNA synthetase [Streptococcus oralis ATCC 35037]
          Length = 424

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELKDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|331019379|gb|EGH99435.1| histidyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 419

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 60/420 (14%), Positives = 127/420 (30%), Gaps = 32/420 (7%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP       +    +    +  G  ++ +P ++  DL+  S G   D   KEM   ADRN
Sbjct: 5   LPEQTPLWRHFEGTVSRLLDNYGYRQIRMPVVEFTDLFKRSIGEVTDIVEKEMYTFADRN 64

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
             ++   P            H  +        + I   FR E   +    R R+F     
Sbjct: 65  GDSLTLRPEGTAACVRAVLEHGITGGGQVQKLWYIGPMFRHERPQKG---RYRQFHQIGV 121

Query: 161 YSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES---GPIGGDLSHEFIVLA-- 214
             F+L  P+         +  +  +  R  +K       +        D   EF+     
Sbjct: 122 EVFNLDGPDIDAELIVMTWRLWGMLGIRNAVKLELNSLGTSEARARYRDALVEFLSAHLD 181

Query: 215 ----DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW--TAPYAATSDVHNE--- 265
               D+           +D   P       D   L   ++           + +      
Sbjct: 182 QLDEDSQRRLKTNPLRVLDTKHPETQAVLVDAPKLADYLDDESRIHFDGLKARLDAAGIP 241

Query: 266 -KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             +   L       ++ +        G + ++     + G    +      + G+G    
Sbjct: 242 YVINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGL--VEQMGGKPTAGVGFAMG 299

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
           +  ++      + +    +           +A +       E++  RL  +   V     
Sbjct: 300 IERLVLLLETLEQVPEEIARQVDVYLCAFGEAAELAALALTEQVRDRLPNLRLQV----- 354

Query: 385 GEQIG---SQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYASH 440
               G   SQF  AD  G    +I+G + ++   + +K  R  G +++++ + +  + + 
Sbjct: 355 NAGAGSFKSQFKKADKSGALYALILGEEELAAKIIGVKPLRGQGEQQNIAWDALSEHLAS 414


>gi|319760650|ref|YP_004124588.1| histidyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039364|gb|ADV33914.1| histidyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
          Length = 425

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 58/425 (13%), Positives = 111/425 (26%), Gaps = 30/425 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G++  LP       +V  I++   N  G  E+  P ++  DL+  + G   D   KEM  
Sbjct: 9   GMHDCLPQDAVLWQSVENILKTVLNSYGYNEIRFPIVEFTDLFKRAIGEVTDVVEKEMYN 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN   +   P            H   Y       + +   FR E   +    +  +F
Sbjct: 69  FNDRNGNNLTLRPEGTAGCVRAGIEHSLFYHQEQ-RLWYMGPMFRRERPQKGRYRQFHQF 127

Query: 156 -LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV-- 212
            +                   + +       H     +      S  I       F+   
Sbjct: 128 SIEAFGQIGPDIEVELILIIVRCWKMLGISEHLTLELNSIGLLSSRIIYRSKLINFLEKN 187

Query: 213 ----LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT-SDVHNEKL 267
                +D            +D               L   +++++  +      + +   
Sbjct: 188 KDSLNSDAIRRLYSNPIRILDTKDVQLKKLLMKAPILYDYLDEYSKNHFNKLCKLLDLSG 247

Query: 268 FDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
              +     V         +F       G + ++     +     +     + + G+   
Sbjct: 248 VSYVVNPYLVRGLDYYNSTVFEWVTNRLGVQKTICAGGRYDELTKQLGGQSVPAVGLSIG 307

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL------SKVG 376
                ++    D   I+    V      +       Q      E I   L         G
Sbjct: 308 LERLLLLMKDVDNNAIVASSCVYIDVYVINLSCCFQQYSFMLSEHIRNELPFLRLMMNQG 367

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                   G     QF  A        +I+    V +  V +K  +   +E +S  EVI 
Sbjct: 368 --------GGNFDKQFNRAIKNNSRFVLIINDHNVYEKTVVLKDLVCKSQETVSYTEVIK 419

Query: 437 YASHR 441
              + 
Sbjct: 420 KFKNL 424


>gi|258653517|ref|YP_003202673.1| histidyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
 gi|258556742|gb|ACV79684.1| histidyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
          Length = 424

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 53/417 (12%), Positives = 119/417 (28%), Gaps = 27/417 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           GI  + P   +  + +   +    +R G   + +P  +   L+        D   KEM  
Sbjct: 9   GIPEYYPPVSRTFEAIRRTLLAAADRAGYGPIELPVFEDTGLFARGVGESTDVVSKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR  +++   P     +      H      LP         FR E RP+ G  R  + 
Sbjct: 69  FADRGGRSVTLRPEGTAGVMRAVIEHSLDRGPLPVKLVYAGPFFRYE-RPQAGRYRQLQ- 126

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVL 213
            +         P             +  +        +    +    P   +    F+  
Sbjct: 127 QVGVEAIGSDDPALDAEVIAIADEGFRDVGLSQFRLDLTSLGDAVCRPAYRERLIAFLDG 186

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP- 272
            D  E     ++      +  +     + ++   ++                ++ D+L  
Sbjct: 187 LDLDEPTRERARLNPLRVLDDKRPAMQEQLAGAPLMLDHLCDACREHFDRVRQVLDALSV 246

Query: 273 --ENKRVSARGIEV--GHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             E      RG++      F       G +  +     + G             GIG   
Sbjct: 247 PYELNPRMVRGLDYYTRTTFEFVHPLLGAQSGMGGGGRYDGLM--AELGGQSLSGIGFGL 304

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--W 381
            V   + ++      +   +        + +     +       +   L + G  V   +
Sbjct: 305 GVDRTLLAAQAEGLTVGHPARCEI--FGVPMGPDSSLRLAT---LAGELRRAGYRVDMAY 359

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
                +   + A A   G  L +++G + + D  V ++   +G +    + +++   
Sbjct: 360 GGRALKTAMKMADAS--GAALALVLGDREIVDGTVVVRDLRSGEQNAYPMGDLVQVV 414


>gi|83319312|ref|YP_424309.1| histidyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|123726526|sp|Q2SSF4|SYH_MYCCT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|83283198|gb|ABC01130.1| His-tRNA synthetase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 414

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 65/408 (15%), Positives = 129/408 (31%), Gaps = 24/408 (5%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAM 104
            K    V   +RE  N+    E+  P  +S +L++ S     D   KEM    D+ ++++
Sbjct: 16  TKLWIKVETKLREILNKFNYSEIRTPMFESKELFIRSIGSTSDIVSKEMYEFVDKKNRSL 75

Query: 105 IYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
           +  P     +      +     + LPF  Y I   FR E        R R+F       +
Sbjct: 76  VLKPEGTASVVRAVVENKLYAEDYLPFKTYYISPMFRYERPQNG---RYRQFHQLGIEVY 132

Query: 164 DLTPEGSKHSYNKMFVSYLRIFH-RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
                   +    +  + +  F     +K       +G        E        +    
Sbjct: 133 GSDSIQQDYEVLNIANNIINDFKLNKNIKIYTNYLITGKNREQYILELKKYLTDFKLCND 192

Query: 223 CSKDFMDFPIPSENTDFDDI------ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           C+      P+   +   DD          + + ++    Y  T D+  E    ++ ++K 
Sbjct: 193 CNIRIEKNPLRVLDCKIDDKQFNNVPSMKDFLTDEEQKRYQQTLDLFKEMNISTIHDDKL 252

Query: 277 VSARGIEVGHIFYF-----GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
           V       G IF         + ++     +     +   + + + G G        I  
Sbjct: 253 VRGLDYYTGFIFEIKYEAKNIEQTIIAGGRYNNLVYEIGNINLPACGFGMGLERFINIIK 312

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             + K      S+  + I L      DQ      ++I      +G     +     + S 
Sbjct: 313 EQNNKLNKNDQSIDLYTICL------DQSAIKLNQQILELSRSIGLISDSNYYNMSLKSA 366

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              +D L     +I+G K  + ++  IK+++       +L   +N   
Sbjct: 367 LKKSDKLNPKYLIILGEKEATSNQFIIKNKINKTEIKTTLTNFVNDLK 414


>gi|288927731|ref|ZP_06421578.1| histidine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330565|gb|EFC69149.1| histidine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 456

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 40/83 (48%)

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +   D C  I +++   G  V       ++  Q A A+  G P  V+ G   +S  KV +
Sbjct: 372 ETESDYCLPIASQVRAAGISVELYPDCAKMKKQMAYANAKGIPFVVLAGESEISQGKVTL 431

Query: 419 KHRLTGIREDMSLEEVINYASHR 441
           K+ LTG ++ +S EE+I   + +
Sbjct: 432 KNMLTGDQQLVSAEELIAKITSK 454


>gi|256078308|ref|XP_002575438.1| glycyl-tRNA synthetase [Schistosoma mansoni]
 gi|238660677|emb|CAZ31671.1| glycyl-tRNA synthetase, putative [Schistosoma mansoni]
          Length = 1322

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 63/484 (13%), Positives = 139/484 (28%), Gaps = 92/484 (19%)

Query: 50  LDNVNAIIREEQNRTGAIE---------MSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
              ++ II +  +  GA E         +  PT  + DL         +   +       
Sbjct: 223 KQEIDKIIVQ-LDNYGADELHQIIRRFDIKSPTTMN-DLTEPKEFNLMFSTMIGPTGQCK 280

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
               +   T + +  +  R    +   LPF   QI   FR+E+ PR G++R REF M + 
Sbjct: 281 G--YLRPETAQGIFVNFQRLLQFNQGRLPFGAAQIGSAFRNEISPRSGLIRVREFTMAEI 338

Query: 161 YSFDLTPEGSKHSYNKMFVS----YLRIFHRLGLK---------------------SIPM 195
             F    +     +  +  +    Y       G +                         
Sbjct: 339 EYFVDPSDKRHPKFEDVRNTEMLLYSSCDQMSGERPRNVTIGEAVDRGVVANQTLGYFMA 398

Query: 196 RAESGPIG------------GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
           R     I                +       D  + +   S  +++    ++ + +D   
Sbjct: 399 RIHLFLIHIGVDAKRLRFRQHLSNEMAHYACDCWDAECQTSYGWIECVGCADRSCYDLNQ 458

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENK---------------RVSARGIEVGHIF 288
              +   +  A      +    ++ + +P                  ++S+  ++  H  
Sbjct: 459 HSKATGTRLVA-EKPLDEPKTVQVCECIPNKGELGKVFRGEAKTIIQQLSSLTLDECHCL 517

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQM------------------GSYGIGAMRVVAAVIE 330
               K +   + T  G     +   +                       G  R++  + E
Sbjct: 518 NNQLKNTGKATLTVNGKQVDLNDSMVQIKEYKNVVHVTEIVPNVIEPSFGIGRILYTIFE 577

Query: 331 SSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDM 384
            S   +      +       L   K      ++         K+ + L+K       D+ 
Sbjct: 578 HSFRVREGDEQRTYLSISPVLAPYKCSLLPLSNHADFVPVVRKLSSELTKYSVSHRVDES 637

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHRF 442
              IG ++A  D +  P  + +    ++       ++ R +  +  + L+E+ +  S   
Sbjct: 638 SGSIGRRYARTDQIAIPYGITIDFDTLNKLPPSATLRERDSMKQIRVPLDELPSLMSDIA 697

Query: 443 SNNR 446
           S N+
Sbjct: 698 SGNK 701



 Score = 42.0 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAI-EMSVPTLQSADLWVESGRYDSYGKEMLR 95
           +G+Y + P+G     N+ +  R+       + E+    L    +   SG  D +   M++
Sbjct: 132 QGLYDYGPMGCAMKANLLSAWRQFFILEDHLLEVDCSMLTPEPVLQASGHVDRFTDLMVK 191

Query: 96  LADRNDK 102
                D 
Sbjct: 192 DVKTGDC 198


>gi|320547963|ref|ZP_08042245.1| serine--tRNA ligase [Streptococcus equinus ATCC 9812]
 gi|320447387|gb|EFW88148.1| serine--tRNA ligase [Streptococcus equinus ATCC 9812]
          Length = 425

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 74/211 (35%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DSDYVLIPTAEVPLTNYYRGEILDGKELPVYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F             +      I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFSKPETSYDELEKMVVN-AENILQKLGLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|294788426|ref|ZP_06753669.1| histidine--tRNA ligase [Simonsiella muelleri ATCC 29453]
 gi|294483857|gb|EFG31541.1| histidine--tRNA ligase [Simonsiella muelleri ATCC 29453]
          Length = 429

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/408 (11%), Positives = 110/408 (26%), Gaps = 26/408 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
                  I++   R G  ++  P ++   L+V S     D  GKEM   +D ND   +  
Sbjct: 29  WQAFENTIQKWTKRFGYNQIRTPIVEQTGLFVRSIGEETDVVGKEMYTFSDSNDTLSLTL 88

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT- 166
                              N P   + +   FR E   +    +  +  ++         
Sbjct: 89  RPEGTASCLRAVVEHNLLHNGPQKLWYMGPMFRRERPQKGRYRQFHQVGIEALGYETPDI 148

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                     ++     + +     +     E          E++   +    +    + 
Sbjct: 149 DVELIAMCANLWRELGILDYLTLELNSLGNREERAAHRSALVEYLTKFENQLDED-SKRR 207

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD-------------SLPE 273
               P+   +T   D+  + +   +        S  H + +                L  
Sbjct: 208 LHTNPLRVLDTKNPDLQEICNNAPKLVDFLGEYSQNHYKTVKKLLNGLNIQFVENPRLVR 267

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 + +        G + ++     + G   +       S G         ++   +
Sbjct: 268 GLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIEELGGKPAASIGFAMGIERLLLLVCEY 327

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                             + +    +       +  A L + G +V       ++ +QF 
Sbjct: 328 GSLKTEHTP--------DVFVMQQGEQSTLVAMQHAATLRENGFNVAQFSGSTKLKNQFK 379

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGIREDMSLEEVINYASH 440
            A+  G    +I+    + ++ V IK  R    +  +   +++   + 
Sbjct: 380 KANDSGARFGLIIAESEIEENLVTIKDLREDKGQITVPAAQLVQQLNE 427


>gi|325977535|ref|YP_004287251.1| seryl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177463|emb|CBZ47507.1| serS [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 425

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DSDYVLIPTAEVPLTNYYRGEILDGKELPVYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F            KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFSKPETSYDEL-EKMVANAENILQKLGLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|306825809|ref|ZP_07459148.1| serine--tRNA ligase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432170|gb|EFM35147.1| serine--tRNA ligase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 424

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELKDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|255087340|ref|XP_002505593.1| predicted protein [Micromonas sp. RCC299]
 gi|226520863|gb|ACO66851.1| predicted protein [Micromonas sp. RCC299]
          Length = 407

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 62/417 (14%), Positives = 126/417 (30%), Gaps = 40/417 (9%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMI 105
            +  + +    R+     G  E   P L+S +L+  ++G  +    ++    D+  + + 
Sbjct: 1   MRVRNWLFGHFRDVARSFGFEEFDAPVLESEELYVRKAG--EEITTQLYNFEDKGARRVA 58

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P        +     KS   LP  ++ +   +R E   R    R RE    +     +
Sbjct: 59  LRPELTPSFARLIMQQGKS-LALPAKWFAVGQCWRYERMTRG---RRREHYQWNMDIVGV 114

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLK--SIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                  +  ++  +    F RLG+    + ++  S  +   +   F V  D+       
Sbjct: 115 EGV---EAEAELLAAITDFFTRLGITSADVGIKVSSRKVLQAVLRRFDVPDDSFAPVCVV 171

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF----DSLPENKRVSA 279
                  P      +   +    + ++      A  S    E L     D++ + K + +
Sbjct: 172 VDKIEKLPREKVVEELAALGVKEAAIDGILDAMAMRSIDQLESLLGADADAVSDLKLLFS 231

Query: 280 RGIEVGHIFYFGTKYSLPMSATFK--------GADGKDHYVQMGSY-------GIGAMRV 324
                G+  +     S+    ++            G+   +  G           G  R 
Sbjct: 232 HAEAYGYRDWLVFDASVVRGLSYYTGVVFEGFDRAGELRAICGGGRYDKLLGALGGEDRP 291

Query: 325 VAAVIESSHDGKGIIWP----DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
           +            ++                  +   +   R A   I ARL   G  V 
Sbjct: 292 MVGFGFGDAVIMELVKDKGLLPESLKSGNVDDLVYPMNAALRPAAMGIAARLRAAGRSVD 351

Query: 381 W---DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               D  G++    F  A+  G    V++G K      V +K   T    D+  E++
Sbjct: 352 LVIED--GKKPKWAFKHAERCGASRVVLIGEKEWEQGVVRVKDLATREETDVKPEDL 406


>gi|12847965|dbj|BAB27775.1| unnamed protein product [Mus musculus]
          Length = 509

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 65/495 (13%), Positives = 133/495 (26%), Gaps = 66/495 (13%)

Query: 11  LQENPRDAEIA----SHKLMLRTGMIHQHSK---------GIYSWLPLGQKALDNVNAII 57
           L+E    AE      +  L L+  +     K         G   + P      + V  +I
Sbjct: 21  LKEQKASAEQIEEEVTKLLKLKAQLGQDEGKQKFVLKTPKGTRDYSPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +    +G+Y    K +  L D+  + +             
Sbjct: 81  IRCFKRHGAEVIDTPVFELKETL--TGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS--FDLTPEGSKHSYN 175
                 +   L         K      P     R REF   D                  
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLK 193

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPI---GGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            M      +     L  +  R     +    G    +F  +  + +     S + +   +
Sbjct: 194 IMCEILSSLQIGNFLVKVNDRRILDGMFAVCGVPDSKFRTICSSVDKLDKVSWEEVKNEM 253

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDV-------HNEKLFDSLPENKRVSARGIEVG 285
             E     ++        Q     +    +        N++  + L + K +    I  G
Sbjct: 254 VGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQAVEGLGDLKLLFEYLILFG 313

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES--SHDGKGIIWPDS 343
                    SL     +      +  +       G   +    I +   +DG   ++   
Sbjct: 314 IDDKISFDLSLARGLDYYTGVIYEAVLLQMPTQAGEEPLGVGSIAAGGRYDGLVGMFDPK 373

Query: 344 VAPFKISLINIKAHD-----QVCRDACE------------------------KIYARLSK 374
                   ++I         +   +A E                        K+ + L  
Sbjct: 374 GRKVPCVGLSIGVERIFSIVEQRLEASEEKVRTTETQVLVASAQKKLLEERLKLVSELWD 433

Query: 375 VGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G           ++ +Q    +  G PL  I+G + + D  ++++   +    D+  E+
Sbjct: 434 AGIKAELLYKKNPKLLNQLQYWEEAGIPLVAIIGEQELRDGVIKLRSVASREEVDVRRED 493

Query: 434 VINYASHRFSNNRPV 448
           ++     R   N+P+
Sbjct: 494 LVEEIRRR--TNQPL 506


>gi|194397764|ref|YP_002037092.1| seryl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|238690854|sp|B5E7F2|SYS_STRP4 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|194357431|gb|ACF55879.1| seryl-tRNA synthetase [Streptococcus pneumoniae G54]
          Length = 424

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSATKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|124515306|gb|EAY56816.1| Histidyl-tRNA synthetase [Leptospirillum rubarum]
          Length = 439

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 62/395 (15%), Positives = 107/395 (27%), Gaps = 23/395 (5%)

Query: 65  GAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G  ++ +P  +S  L+  S  G  D   KEM    D+        P     +      H 
Sbjct: 39  GFQKVLLPMFESTSLFARSIGGATDIVEKEMYTFLDKGGDQYSLRPEGTASLLRAAIEHR 98

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
               +           FR E        R R+F    A                +     
Sbjct: 99  LVDPSRVIRLAYSGPMFRHERPQAG---RLRQFTQIGAEVLGPLTPSDD---VDLLSLLH 152

Query: 183 RIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           R+     L S  +   S   P+      E +V      +   C                 
Sbjct: 153 RMAIDFALPSWSLLLNSLGCPLCRPAYRESLVSFLLAHSGSLCETCHRRTAQNPLRVLDC 212

Query: 241 DIISLNSIVEQ---WTAPYAATSDVHNEKLFDSLP--------ENKRVSARGIEVGHIFY 289
            + S    +E+    T      S  H E++   L          ++ V          F 
Sbjct: 213 KVPSCQETLERAPRITEHLCPKSRDHFEEVKRGLDALDIPYVLSHRLVRGLDYYTETTFE 272

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           F +      S    G        ++G   +  +   A +       +      +     +
Sbjct: 273 FVSDALGAQSTWAAGGRYDGLTAELGGPDVPGIGFAAGIERLWLLREKAGTLPAPERHPV 332

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++     D     A   +  +L K G        G +I S F  A+  G     I+G  
Sbjct: 333 RILVFSM-DAKGNGAALDLVRQLRKEGIPASGHFSGGKIKSAFRQAERDGALFLAILGED 391

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +    V+IK+  TG ++   L +     + R   
Sbjct: 392 ELRQETVQIKNLTTGEQKAWPLNDA-KTIADRIRT 425


>gi|114327269|ref|YP_744426.1| histidyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
 gi|114315443|gb|ABI61503.1| histidyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
          Length = 427

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 59/408 (14%), Positives = 120/408 (29%), Gaps = 28/408 (6%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMI 105
           +   +V    R      G  E + P  +   ++  +     D   KEM    DR  + + 
Sbjct: 31  RRYRHVVETARRIVGLYGFDEWATPVFEDTKVFSRTLGETSDVVTKEMYTFTDRGGEGLT 90

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P     +     ++  + ++LP   +     FR E   +    R R+F          
Sbjct: 91  LRPEGTAAICRALVTNGLT-QSLPQKVFYAGPMFRYERPQKG---RYRQFHQIGLELIGA 146

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
               +           L      G  ++ +         D   E +V   +   +    +
Sbjct: 147 AEPLADAEAIACGWQILNALGIGGSVALELNTLGDKASRDAYREALVAYFSAHREALSEE 206

Query: 226 ----------DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
                       +D     +     D   +   + +  A +      H  +L     EN 
Sbjct: 207 SRTRLERNPLRILDSKNEGDRALIADAPVIYDHLTEEAATFYVGLKRHLTQLGVPFRENP 266

Query: 276 RVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
           R   RG++      F F T  +L    T       D  V             AA IE   
Sbjct: 267 R-IVRGLDYYNHTAFEFVTD-ALGSQGTVLAGGRYDGLVAEMGGPATPAVGWAAGIER-- 322

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                +           +  +   ++   +A   +   L   G        G  +  +  
Sbjct: 323 ---LSMLLAEPPAAPAPVAVVPVGEEE--EAALDVVQSLRAAGLRAEMAYRG-NLKRRME 376

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            A+  G    VI+G++  +    ++K   +G +++++L+ +  +   R
Sbjct: 377 RANKAGSWAAVILGTEERARGVAQVKDLRSGEQQEVALDGLATWLLAR 424


>gi|149003505|ref|ZP_01828379.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|168494543|ref|ZP_02718686.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|237650372|ref|ZP_04524624.1| seryl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974]
 gi|237822060|ref|ZP_04597905.1| seryl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758441|gb|EDK65440.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|183575522|gb|EDT96050.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
          Length = 424

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSATKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|319943739|ref|ZP_08018020.1| histidine--tRNA ligase [Lautropia mirabilis ATCC 51599]
 gi|319742972|gb|EFV95378.1| histidine--tRNA ligase [Lautropia mirabilis ATCC 51599]
          Length = 434

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 60/419 (14%), Positives = 106/419 (25%), Gaps = 24/419 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP           I+       G  ++  P ++   L+    G   D   KEM  
Sbjct: 11  GMNDLLPQTSARWQRFEEIVASWARSYGYSQIRTPIVEPTPLFARGLGTVTDIVEKEMYS 70

Query: 96  LADR-NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             D  N + +   P     +      H   Y   P   + +   FR E   R    R R+
Sbjct: 71  FRDALNGEELTLRPEGTAGVVRAVIEHNLLYDG-PRRLWYLGPMFRHERPQRG---RYRQ 126

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F      +              M           GL+         P       + I   
Sbjct: 127 FHQVGVEALGYGGPEVDAEVIAMGQRLWDDLGIEGLQLQINSIGDAPERARHRQDLIDHF 186

Query: 215 DTGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           +     +     +     P+   ++    +  +     +        S  H E+L   L 
Sbjct: 187 EKHAELLDEEAKRRLHANPLRILDSKNPAMQEIIEQAPRLIDYLEGPSREHFEQLRGYLA 246

Query: 273 E-------NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                   N R+           +      L   AT  G  G  +   +   G       
Sbjct: 247 RLGIEATLNPRLVRGMDYYNRTVFEWVTDRLGAQATVCG--GGRYDALIEMLGGKPAPAC 304

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
              I        +     +       + + +       A       L   G +V     G
Sbjct: 305 GFAIGVERLLDLVEQAGGLGEGDAPDVYLISSGDGTMAAALHTAEALRARGIEVLMHAGG 364

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI------REDMSLEEVINYA 438
               SQF  A   G  L +++G   +   +  +K    G       +  + L++     
Sbjct: 365 GSFKSQFKRAGASGAHLALVIGEDELKAGEATLKWLREGEAGQGGRQVRIRLDDAPEAV 423


>gi|146329531|ref|YP_001209428.1| histidyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
 gi|146233001|gb|ABQ13979.1| histidyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
          Length = 426

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 55/440 (12%), Positives = 113/440 (25%), Gaps = 58/440 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP      + +   I  + ++ G +   +P L+   L+  +     D   KEM  
Sbjct: 11  GMRDILPPESDLREQLMDKIHHKLHQFGYLPADLPLLEKTALFQRTIGSETDVVTKEMYT 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKS--------------YRNLPFTFYQIQLKFRD 141
             DR+++++   P              ++              Y       Y+   +   
Sbjct: 71  FLDRSEESVTLRPEATAGAVRAIIEQGRAQQVQRLYVEGAMFRYERPQKGRYRQFSQVSV 130

Query: 142 ELRPRFGVMRSREFLMKDAYSFDL--------------TPEGSKHSYNKMFVSYLRIFHR 187
           E        +  E +      F                     +  + K  V+YL+   +
Sbjct: 131 ESFGVKSAAQDVELIQLAYELFQELGLISLVRLELNTIGLPEERQLFQKDLVAYLQNHRQ 190

Query: 188 LGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL 245
              +    R E+ P  I      +     D     +               T  + +   
Sbjct: 191 ELDEDSQRRLETNPLRILDSKDPQVQACLDAAPALLDYLGSESQQHFEQVTTLLNALDIP 250

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
             +  +             E   D+L     V A G   G +   G   +      F   
Sbjct: 251 WRLNPRLVRGLDYYCHTVFEWTTDALGAQSAVCAGGRYDGLVEQLGGAATPAAGFAFGVD 310

Query: 306 DGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                  Q   +      +   +   +     + W   +         +  +D       
Sbjct: 311 RILLLLEQNAIWQARRPLIYMVIASFAEQAMAMQWAAKLRQQFPDDAIVLHND------- 363

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
              Y  L                  QF  AD  G    ++ G +   + +V  K   +G 
Sbjct: 364 ---YQSLKN----------------QFKKADKSGADFVLVFGEQERENQQVNCKDLQSGA 404

Query: 426 REDMSLEEVINYASHRFSNN 445
           +     +E++ Y + +    
Sbjct: 405 QHCFGFDELVAYLTAQKDKK 424


>gi|261416780|ref|YP_003250463.1| seryl-tRNA synthetase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261373236|gb|ACX75981.1| seryl-tRNA synthetase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302326186|gb|ADL25387.1| serine--tRNA ligase [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 428

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 88/288 (30%), Gaps = 20/288 (6%)

Query: 17  DAEIASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           D +    +L +            G   +  LG +    +     +E  + G  E + P L
Sbjct: 142 DHKTLGERLGIFDFERGAKISGSGFPVYRGLGSRLERALIQFFLDEHQKAGFEEFTPPYL 201

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
            + +    +G+   + ++M R     D  +   PT E  +T+++   +     LP     
Sbjct: 202 VTRNTMRGTGQLPKFEEDMYRC--DKDDDLFLIPTAEVPLTNLYSGEVIPESELPKRICA 259

Query: 135 IQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
               FR E     +   G++R  +F   +   F       +           ++  +LGL
Sbjct: 260 YSACFRREAGSYGKDTRGLLRLHQFNKVEMVYFAHPEHSYEDHEELTRFG-EKLLEKLGL 318

Query: 191 KSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF----DDI 242
               +    G +G   +     E     +    +V    +F D+     N        ++
Sbjct: 319 PYHRLALCKGDLGFGAAKCYDLEVYAPVEKKWLEVSSCSNFEDYQARRANIKTKVGGKNV 378

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFD---SLPENKRVSARGIEVGHI 287
                       P        N +  D    +PE  R    G+E    
Sbjct: 379 YLHTLNGSGLATPRVMVGICDNYQQKDGSLKIPEVLRPYMGGLEFITP 426


>gi|229012525|ref|ZP_04169699.1| Histidyl-tRNA synthetase 1 [Bacillus mycoides DSM 2048]
 gi|228748685|gb|EEL98536.1| Histidyl-tRNA synthetase 1 [Bacillus mycoides DSM 2048]
          Length = 431

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 129/421 (30%), Gaps = 33/421 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   DL   + G  D   KE+  L D+
Sbjct: 12  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYDLMSYKYGGGDEILKEIYTLKDQ 71

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 72  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 126

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      +S  I  +L+ + I+ 
Sbjct: 127 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILQSINIPTELTSDVILS 186

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLP 272
            D  E             +    T        N+++     P A   D  N  L  D + 
Sbjct: 187 LDKIE--KIGIDGVRKDVLDRGITVEMADTICNTVLSCLKLPIADFKDTFNNTLVADGVE 244

Query: 273 ENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
           E +++       GI    IF       L M                 S G G  R    +
Sbjct: 245 ELQQLQQYLLALGINENTIFNPFLARGLTMYTGTVYEIFLKDGTITSSIGSGG-RYDNII 303

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLSKV- 375
                D              +    +   + +   A            C +I  +L    
Sbjct: 304 GAFRGDNMNYPTVGISFGLDVIYTALSQKETISSTADLFIIPLGTELQCLQIAQQLRSTT 363

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V  +  G ++      A+    P  +I+G + +S   V +++   G    + L  + 
Sbjct: 364 SLKVELELAGRKLKRALNYANKENIPYVLIIGEEELSTETVVLRNMKEGTEVKIPLSSLE 423

Query: 436 N 436
           N
Sbjct: 424 N 424


>gi|288904563|ref|YP_003429784.1| seryl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|288731288|emb|CBI12838.1| seryl-tRNA synthetase [Streptococcus gallolyticus UCN34]
          Length = 425

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DSDYVLIPTAEVPLTNYYRGEILDGKELPVYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F            KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFSKPETSYDEL-EKMVANAENILQKLGLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|261365615|ref|ZP_05978498.1| histidine--tRNA ligase [Neisseria mucosa ATCC 25996]
 gi|288565847|gb|EFC87407.1| histidine--tRNA ligase [Neisseria mucosa ATCC 25996]
          Length = 431

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 55/434 (12%), Positives = 119/434 (27%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L          ++       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDVVGSWTRAYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWDKLGIRDYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   ++   D+  + +     T      S
Sbjct: 183 AAHRAALVEYLTCYEDKLDED-SKRRLKTNPLRVLDSKNPDLQEICNAAPHLTDYLGEES 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 RNHYSRFKAMLEGLGIQYVENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLI- 300

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
            +      +  IG    +  ++    +   +    +   + +        D         
Sbjct: 301 -EELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQG--GGADLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++ +++I+    
Sbjct: 414 QTVAADDLIHTLQQ 427


>gi|209966825|ref|YP_002299740.1| histidyl-tRNA synthetase [Rhodospirillum centenum SW]
 gi|209960291|gb|ACJ00928.1| histidyl-tRNA synthetasehisS [Rhodospirillum centenum SW]
          Length = 450

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 66/445 (14%), Positives = 121/445 (27%), Gaps = 46/445 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G    LP  Q A   +   IR    R G + +  P  + AD L  +SG         ++
Sbjct: 10  PGTMELLPRRQIAFQRMLDTIRRGYERFGFLPVETPVFEVADVLLSKSGGETEKQVYFVQ 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN---LPFTFYQIQLKFRDELRPRFGVMRS 152
                ++           +T     ++  +      PF  YQ+Q  +R E   +    R 
Sbjct: 70  STGAIEQGHRPDLALRFDLTVPLARYVAEHERDLAFPFRRYQMQRVYRGERAQKG---RY 126

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
           REF   D                   V Y                    + G    E + 
Sbjct: 127 REFYQCDIDVIGKDSLPVVFDAEMPAVIYTIFSELDVGPFRINFNNRKILLG--LFESLG 184

Query: 213 LADTGETQVFCSK--------------------------------DFMDFPIPSENTDFD 240
           + +     +   +                                D + F  P+ +T   
Sbjct: 185 INEPETRALVLRQVDKLDKLSRDEVVGLLQGDGIGLDAATAGRVLDMIGFAGPAADTLAH 244

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK----RVSARGIEVGHIFYFGTKYSL 296
            +  L      +    A  S+V        +PE         ARG++      + T  + 
Sbjct: 245 -LEGLGVDTPTFRTGLAELSEVVAALKAFGVPETHWRVNLAIARGLDYYTGTVYETFLTD 303

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                   + G+   +           V  ++  +                    + +  
Sbjct: 304 HPGLGSVCSGGRYENLAGLYTKSKLPGVGISIGLTRLFYALEQAGIVTDGPSTVQVLVTQ 363

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D         I A L   G +        +   QFA AD  G    VI+G    +  +V
Sbjct: 364 FDSALLPDYLAIGAELRAAGINTEIQLEPAKPKKQFAYADKAGIRFAVIMGPDEKARGEV 423

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            +K  ++G +  ++   + ++   R
Sbjct: 424 TVKDMVSGEQAAVARAGLADWLRTR 448


>gi|219681653|ref|YP_002468039.1| histidyl-tRNA synthetase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471342|ref|ZP_05635341.1| histidyl-tRNA synthetase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624496|gb|ACL30651.1| histidyl-tRNA synthetase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 423

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 59/424 (13%), Positives = 128/424 (30%), Gaps = 28/424 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+Y + P   K  + +  I +E  N    +E+ +P L+  +++  + G   D   KEM  
Sbjct: 10  GMYDYFPKDLKIWNYIEIIFKEVLNSYCYLEIRLPILEKTEIFKRAIGNVTDVVEKEMYS 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR    +   P            +          F+ +   FR E   +    R R+F
Sbjct: 70  FNDRKGNNLTLRPEGTVGCVRAIIQNNL--LQKSNKFWYLGPMFRYERPQKG---RYRQF 124

Query: 156 LMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
               A  F   T +            + RI     +        S         E +   
Sbjct: 125 YQLGAEVFGLETEDIDLEIIILTNRLWKRIGIDSFITLEVNSIGSKIDRVQYKKELVNFL 184

Query: 215 DTGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
              E  +   C +     P+   ++   DI +L       +   + + + H + L + + 
Sbjct: 185 KKREYLLDEDCKRRLYTNPLRILDSKNQDIQNLLKEAPLLSEYISFSENNHFKNLCNMMN 244

Query: 273 ------ENKRVSARGIEV--GHIF-----YFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                 +      RG++     +F       G + ++     +     +    +  + G 
Sbjct: 245 HHGIKYKCNPHLVRGLDYYNSTVFEWKSNKLGAQNTICAGGRYDSLVQEMGGRKTPAIGF 304

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                   ++  S      +  +S         N K H     +    +Y +L      +
Sbjct: 305 AIGIERLVLLVKSLKIFSEVIEESNVYIIFIGDNNKCHAINLSEEIRDLYPKL-----RI 359

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           F + + + +  +   A      + +++G   +      +K         +  +E+I    
Sbjct: 360 FINFLHQNLTKKIKNAISSLARIIILIGDNEIKKGFFLVKDLKEKKEYHLLKKELILKIQ 419

Query: 440 HRFS 443
             F 
Sbjct: 420 EIFK 423


>gi|145219987|ref|YP_001130696.1| seryl-tRNA synthetase [Prosthecochloris vibrioformis DSM 265]
 gi|189083579|sp|A4SFD5|SYS_PROVI RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|145206151|gb|ABP37194.1| seryl-tRNA synthetase [Chlorobium phaeovibrioides DSM 265]
          Length = 430

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 72/214 (33%), Gaps = 13/214 (6%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
              G   ++  G +    +   + +    + G  E+  P + + +    +G++  +  E+
Sbjct: 163 SGAGFPVYVGKGARLERALINFMLDSHTEKHGYKEVFPPFMVNRESLRGTGQWPKFAGEV 222

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
                  +  +   PT E  +T++ R  +    +LP ++      FR E     +   G 
Sbjct: 223 Y---HAPEDELYLIPTAEVPVTNLHRGELLETESLPISYAAYSACFRREAGSYGKETRGF 279

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +   F    +  +     +      I   L +    +   SG I  + +  
Sbjct: 280 LRVHQFNKVEMVKFTKPEDSYQAL-EDIRGHAEAILRALEIPYRVLLLCSGDISANAAKC 338

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              E    A+    +     +F D+     N  F
Sbjct: 339 YDIEVWSPAEEKYLEASSCSNFEDYQARRANIRF 372


>gi|116071586|ref|ZP_01468854.1| histidyl-tRNA synthetase [Synechococcus sp. BL107]
 gi|116065209|gb|EAU70967.1| histidyl-tRNA synthetase [Synechococcus sp. BL107]
          Length = 421

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 61/422 (14%), Positives = 107/422 (25%), Gaps = 29/422 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKEM 93
           +   LP   +    V A  R    R+G  E+  P ++  DL+       +   D  GKEM
Sbjct: 1   MVDLLPQALQRWQAVEAEARAHFQRSGFGEIRTPLMEPTDLFCRGIGEAT---DVVGKEM 57

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
               DR +++    P     +      H       P   +     FR E        R R
Sbjct: 58  YTFNDRGERSCTLRPEGTASVVRSALQHGL-LTQGPQKLWYAGPMFRYERPQAG---RQR 113

Query: 154 EFLMKDAYSFDLTPEGSK-HSYNKMFVSY--------------LRIFHRLGLKSIPMRAE 198
           +F          +   S        +                 L            + A 
Sbjct: 114 QFHQIGVEWLGASNARSDVEVIALAWDFLASLGVGGLELQLNSLGSADDRKGYRTALVAW 173

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA 258
              I   L  +      T   ++  SK+     +        D +S  S           
Sbjct: 174 LEQIAEQLDEDSRARLSTNPLRILDSKNKATQALLESAPTLIDALSSESRTRFDLVQQGL 233

Query: 259 TSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           T+      L   L                   G + ++     + G   +       + G
Sbjct: 234 TTLGIPFCLNPRLVRGLDYYCHTAFEITSDQLGAQATVCGGGRYDGLVSQLGGADTPAVG 293

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPF-KISLINIKAHDQVCRDACEKIYARLSKVGC 377
                    ++  +      +   +           +         A   +   L   G 
Sbjct: 294 WALGLERLLLVLEAAAKADPVGRAAQVVTAPKPDAYLVNRGAQAEGAALALARALRSQGL 353

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVIN 436
            V  D  G   G QF  AD  G    +++G +     +V IK     G     +++ +  
Sbjct: 354 TVELDSSGAAFGKQFKRADRCGARFALVLGDEEAGRGEVLIKPLLEKGDEATWAIDAISA 413

Query: 437 YA 438
             
Sbjct: 414 MV 415


>gi|270307457|ref|YP_003329515.1| histidyl-tRNA synthetase [Dehalococcoides sp. VS]
 gi|270153349|gb|ACZ61187.1| histidyl-tRNA synthetase [Dehalococcoides sp. VS]
          Length = 418

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 55/399 (13%), Positives = 116/399 (29%), Gaps = 13/399 (3%)

Query: 56  IIREEQNRT----GAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPT 109
            +R++  R     G  +   P  + A L+V S     D   KEM    DR    +   P 
Sbjct: 21  FVRQQAARIAALYGYQQTDTPVFEDAGLFVRSVGEGTDIVSKEMYTFEDRGGDKLTLRPE 80

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
               +   +  H    R  P   Y +   FR +        +  +F  +     D + + 
Sbjct: 81  GTAPICRAYLEHGMQTRTKPVKLYYLSSIFRYDRPQAGRYRQHHQFGFEAIGEADASLDA 140

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                     + L I       +     E  P        +    + G+    C      
Sbjct: 141 EVIEMAWRLYNLLGINDLSLELNSIGCRECRPAYISALKAYYGQHE-GKLCSDCKTRLDK 199

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSARGIE 283
             +   +   ++   +     + T         H  +L + L              RG++
Sbjct: 200 NTLRLLDCKREECQCVAENAPRSTDYLCLDCLAHYNRLKECLTVMDLPFHENFRLVRGLD 259

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                 F  + S+  + +  G  G+   +     G     +  A               +
Sbjct: 260 YYSRTVFEIQPSIEGAQSTIGGGGRYDGLIEQLGGESTPAIGFATGIERIILNLKRQGIT 319

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
                   + +    +    A   + + L K G  ++     + I +Q   A+ LG    
Sbjct: 320 PPSLPSPSVFLAYMGEAASLASVALASDLRKAGIGIYQTYAQKSIKAQLRQANSLGADWA 379

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           VI+G + +      +++     +  + L+++I     + 
Sbjct: 380 VILGEEELKQGCAVLRNMKEAGQATIPLDQLICEIKKQI 418


>gi|148988163|ref|ZP_01819626.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|148993951|ref|ZP_01823321.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|168488101|ref|ZP_02712300.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|147926627|gb|EDK77700.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|147927540|gb|EDK78567.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|183573172|gb|EDT93700.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|332075256|gb|EGI85726.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA17570]
          Length = 424

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSATKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|119872407|ref|YP_930414.1| glycyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
 gi|119673815|gb|ABL88071.1| glycyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
          Length = 585

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 82/214 (38%), Gaps = 9/214 (4%)

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
            P P E        +  +I E++            E     L E  R   + + +G   Y
Sbjct: 357 LPTPREVEVARLYPNPVAIREKYGEKTGEVIKALKENENMVL-EAFRTGRQEVVLGQ--Y 413

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES----SHDGKGIIWPDSVA 345
             T+  + +    +  D +     +     G  R++  V+E      +    +  P  +A
Sbjct: 414 VITRDMVFIKIEKRKTDIEKFVPHVVEPSFGLDRILYVVLEHAVAIENGRVYLRLPPDIA 473

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
           P  + ++ I        +   ++  RL   G  V ++D G  IGS++A  D +G PL V 
Sbjct: 474 PVAVCILPIVKRADYV-EIGRRLMRRLGDEGFTVIYEDEG-TIGSRYAYCDEIGTPLAVT 531

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +  K   D  V I+ R T  +  + LE+V  + +
Sbjct: 532 IDEKTPVDETVTIRDRDTKRQVRIKLEKVPTFVA 565



 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 6/80 (7%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAI----EMSVPTLQSADLWVESGRYDSYGKE 92
            G Y + PL  +   N+    R             E+  P +    ++  SG  D +   
Sbjct: 28  SGFYDYGPLAVQLRRNIIDKWRRTFVTP-YQDLIIEVETPIIMPELVFKASGHLDHFTDY 86

Query: 93  MLRLADRNDKAMIYGPTHEE 112
           ++       +        EE
Sbjct: 87  VVTCTKC-GRKYRADHLVEE 105


>gi|229151511|ref|ZP_04279714.1| Histidyl-tRNA synthetase 1 [Bacillus cereus m1550]
 gi|228632054|gb|EEK88680.1| Histidyl-tRNA synthetase 1 [Bacillus cereus m1550]
          Length = 425

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 127/427 (29%), Gaps = 41/427 (9%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRELALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++       F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEAELMGMAFELFRTLNLEITIQYNNRKLLNGILQAINIPTELTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT    +  ++    E +  P  A      
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADFKEAFNNPLVADGVNEL 245

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           ++L   L       A GI    IF       L M                 S G G  R 
Sbjct: 246 QQLQQYL------IALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGG-RY 298

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARL 372
              +     D              +    +   + +   A            C +I  +L
Sbjct: 299 DNIIGAFRSDNINYPTVGISFGLDVIYTALSQKETISSTADLFIIPLGTELQCLQIAQQL 358

Query: 373 SKV-GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
                  V  +  G ++      A+    P  +I+G   +S   V +++   G    + +
Sbjct: 359 RSTTSLKVELELAGRKLKRVLNYANKENIPYVLIIGEDELSTETVMLRNMKEGSEVKVPI 418

Query: 432 EEVINYA 438
             + +Y 
Sbjct: 419 SSLSSYL 425


>gi|116516325|ref|YP_815885.1| seryl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|148983808|ref|ZP_01817127.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|161410754|ref|NP_357966.2| seryl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|30173153|sp|Q8DR22|SYS_STRR6 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|122279229|sp|Q04M63|SYS_STRP2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116076901|gb|ABJ54621.1| seryl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|147923955|gb|EDK75067.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301799511|emb|CBW32058.1| seryl-tRNA synthetase [Streptococcus pneumoniae OXC141]
          Length = 424

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSATKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|7507632|pir||T16843 hypothetical protein T10F2.1 - Caenorhabditis elegans
          Length = 746

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 86/310 (27%), Gaps = 20/310 (6%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
              Y         K   +   + + +              ++  +      E +  AD  
Sbjct: 420 LGYYMARCHQFLMKVGIDGRRLRFRQHLSNEMAHYAQDCWDAEILTSYGWIECVGNADRA 479

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
              +       +  + +E    + +       +   A    +     +K+  SL +    
Sbjct: 480 CYDLQQHYKATNVKLVAEKKLPEPVDVNFVEAQANMALLGKSFKKDAKKIQTSLQQLTSE 539

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM------------GSYGIGAMRVV 325
               +E   +       S+         +  +                      G  R++
Sbjct: 540 QVSALEEELLAKKLYNLSVDGQNYALTPEHLNIKKYTKKIHVQEITPSVIEPSYGIGRIM 599

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAH------DQVCRDACEKIYARLSKVGCDV 379
            A++E S   +      +   FK  +  IK        +       + +   LS+     
Sbjct: 600 YALLEHSFRQREGDEQRTFLAFKPLVAPIKCSVLPISANDTLIPVMDAVKEELSRFEMSY 659

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGIREDMSLEEVINY 437
             DD    IG ++A  D +G P  + V    +  +   V I+H  T  +  + + E+   
Sbjct: 660 KVDDSSGTIGRRYARTDEIGIPFGITVDFDSLKTTPFTVTIRHAETMSQIRLEVSELGRL 719

Query: 438 ASHRFSNNRP 447
            S   +  + 
Sbjct: 720 ISDLVAGRQQ 729



 Score = 47.0 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 10/99 (10%)

Query: 14  NPRDA---EIASHKLMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-R 63
            P++A    +    L+ R     Q         G+Y + P+G     N+    R+     
Sbjct: 127 APKEASFDRLKLEDLLKRRFFYDQSFAIYGGVTGLYDFGPMGCSLKANMLQEWRKHFILE 186

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
            G +E+   +L    +   SG  D +   M++     + 
Sbjct: 187 EGMLEVDCTSLTPEPVLKASGHVDRFADWMVKDMKNGEC 225


>gi|161350030|ref|YP_397784.2| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
          Length = 425

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 12/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G K    +   + +   + G +E+  P L +++    SG+   +  E  + +   +  +
Sbjct: 172 NGAKLERALINFMLDIHTKNGYLELMPPALVNSESLRGSGQLPKFSNESFKCS---NDDL 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T   R+ I   + LP  +      FR E     R   G++R  +F   + 
Sbjct: 229 WLSPTAEVPLTAFHRNEIIDPKQLPIKYVAYSPCFRREAGSYGRDTKGLIRLHQFNKVEL 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF----IVLADT 216
           Y F   P  S  ++ K+      I  +L L    +   +G +G   S  F     + +  
Sbjct: 289 YWFC-DPSKSLEAHKKITSDAESILKKLNLPYRLVDICTGDLGFSSSRTFDLEVWLPSSK 347

Query: 217 GETQVFCSKDFMDF 230
              ++    + +DF
Sbjct: 348 CYREISSCSNCLDF 361


>gi|15457932|gb|AAK99176.1| Seryl-tRNA synthetase [Streptococcus pneumoniae R6]
          Length = 445

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 186 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 245

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 246 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 302

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 303 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSATKTYDLEVWI 361

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 362 PAQNNYREISSCSNTEDFQARRAQIRYRDEA 392


>gi|254282343|ref|ZP_04957311.1| histidyl-tRNA synthetase [gamma proteobacterium NOR51-B]
 gi|219678546|gb|EED34895.1| histidyl-tRNA synthetase [gamma proteobacterium NOR51-B]
          Length = 404

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 57/408 (13%), Positives = 116/408 (28%), Gaps = 28/408 (6%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYGPTH 110
           + A  R      G  E+ +P ++S  L+  S G   D   KEM    DRN  ++   P  
Sbjct: 1   MEAAARRVLAGYGYQEIRLPVMESTGLFARSIGEVTDIVEKEMYTFEDRNGDSISLRPEG 60

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
                     H  +    P   + +   FR E   +    +  +  ++         +  
Sbjct: 61  TAGCVRAVVQHNLAIT--PRRLWYMGPMFRYERPQKGRQRQFHQLGVEAFGVASPDQDAE 118

Query: 171 KHSYNKMFVSYLRIFHR-------LGLKSIPMRAES------GPIGGDLSHEFIVLADTG 217
                +     L +          +G  +   R  S          GD+  +     +T 
Sbjct: 119 ILLLCQRLWQALGVADDLKLELNSIGNTASRDRFRSELVKYLQQYRGDIDEDSQRRLETN 178

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             ++  SK      I        D +   S  +        ++     +L   L      
Sbjct: 179 PLRILDSKHSRTQEIVDSGPRLLDFLDDESRADFERLQDLLSTSGVAFELNPKLVRGLDY 238

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             + +        G + ++     + G   +     + + G G       ++  +   + 
Sbjct: 239 YNKTVFEWTTTALGAQGTVCGGGRYDGLVRQFGGKDVPAAGFGLGLERLILLMQAQGEQK 298

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFWDDMGEQIGSQFAVA 395
               +         I +   D+            L        +     G    SQF  A
Sbjct: 299 EPAAE---------IYVVTSDESAYRHALPRVEALRSAFPRLRIVQHLGGGSFKSQFKRA 349

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           D  G  L ++ G    S++ V +K    G +  +    + +  + +F 
Sbjct: 350 DKSGAALALVFGDTECSNNTVTLKPLRGGDQRSIDDAGLSDAVAEQFE 397


>gi|158290346|ref|XP_311956.4| AGAP002945-PA [Anopheles gambiae str. PEST]
 gi|157017849|gb|EAA07591.5| AGAP002945-PA [Anopheles gambiae str. PEST]
          Length = 302

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 5/156 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
            G Y            +      E  + G  E   P   S A L  E      +  E+  
Sbjct: 8   SGCYILRHWSFAIWKAIRNWFDAEITKLGVKECYFPIFVSRAALEREKTHIADFAPEVAW 67

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    D  +       PT E VM   +   I+SYR+LP    Q     R E +     +R
Sbjct: 68  VTKSGDSELAEPIAVRPTSETVMYPAYAKWIQSYRDLPIRLNQWNNVVRWEFKHPQPFLR 127

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           +REFL ++ ++   + + +      +   Y +++  
Sbjct: 128 TREFLWQEGHTAFASKQEADEEVLTILDLYAKVYTD 163


>gi|68171802|ref|ZP_00545142.1| Histidyl-tRNA synthetase, class IIa [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658069|ref|YP_507112.1| histidyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
 gi|123736410|sp|Q2GHH1|SYH_EHRCR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|67998775|gb|EAM85487.1| Histidyl-tRNA synthetase, class IIa [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88599526|gb|ABD44995.1| histidyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
          Length = 413

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 50/399 (12%), Positives = 114/399 (28%), Gaps = 40/399 (10%)

Query: 63  RTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           R G I +  P ++  +++ ++     D   KEM    D++ + +   P     +  +  +
Sbjct: 36  RYGFIAVDTPIIEFTEVFTKTLGDDSDIVMKEMYNFQDKSGENITLRPEFTSAIVRVLIN 95

Query: 121 HIK-------------SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
                            Y        +   +   E       +   E +    +  D   
Sbjct: 96  KNLIIPVKLFSSGPVFRYERPQKCRQRQFHQVNFEFFGSDLPLADIEMIALGYHILDE-- 153

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                   K+        + LG K      +   I     ++  +  D+    +      
Sbjct: 154 -------LKLLDDITLEINFLGDKETMNSYKLSLIEYLNKYKKDLSEDSQRRLITNPLRI 206

Query: 228 MDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
           +D   P +     ++ ++     +     +A      +E        +  V         
Sbjct: 207 LDSKAPEDREILLNVPNISYFYSKSSNDFFAEVLYGLDELCIPYKVNHSIVRGLDYYCNT 266

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           +F F T      +A   G         MG    G                 +I      P
Sbjct: 267 VFEFTTSKLGAQNAVVAGGRYDGLVKSMG----GNDTPAVGFAMGVERVSALIDYKHQEP 322

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF---PLQ 403
             + LI I            K+   L   G  V W+     +      A L       + 
Sbjct: 323 RSVVLIPIGKD---AVSYALKLAYELRCNGISVNWNYKNANL----RNA-LRKVGDDNIV 374

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +I G + + ++ +++K   TG ++++   ++++   ++ 
Sbjct: 375 LIFGDEELKNNTIQVKDMKTGEQQEIVRCDLLDTLCNKI 413


>gi|182683380|ref|YP_001835127.1| seryl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|182628714|gb|ACB89662.1| seryl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
          Length = 452

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 193 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 252

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 253 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 309

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 310 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 368

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 369 PAQNNYREISSCSNTEDFQARRAQIRYRDEA 399


>gi|168482647|ref|ZP_02707599.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|172043721|gb|EDT51767.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|332077694|gb|EGI88155.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA41301]
 gi|332203581|gb|EGJ17648.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA47368]
          Length = 424

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNNYREISSCSNAEDFQARRAQIRYRDEA 371


>gi|168485545|ref|ZP_02710053.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|183571170|gb|EDT91698.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
          Length = 424

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNNYREISSCSNAEDFQARRAQIRYRDEA 371


>gi|307706061|ref|ZP_07642880.1| seryl-tRNA synthetase [Streptococcus mitis SK321]
 gi|307618461|gb|EFN97609.1| seryl-tRNA synthetase [Streptococcus mitis SK321]
          Length = 424

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDSN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|169832533|ref|YP_001693918.1| seryl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|238688320|sp|B1I9K5|SYS_STRPI RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|168995035|gb|ACA35647.1| seryl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
          Length = 424

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|297180847|gb|ADI17052.1| histidyl-tRNA synthetase [uncultured alpha proteobacterium
           HF0010_30A23]
          Length = 413

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 50/410 (12%), Positives = 113/410 (27%), Gaps = 35/410 (8%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLRLADRNDKAMI 105
           +A  +V           G   M  P  +  +++        D   KEM     +    ++
Sbjct: 20  RAQRHVVDTADAVSRAYGYDRMETPMFEQVEVFNRPLGESSDVVTKEMFDFQTKGGDHVV 79

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFD 164
             P +   +     S+  ++ +LP  ++     FR E        R R+F          
Sbjct: 80  LRPENTAGVVRSVISNGLTH-DLPGRYFYAGPMFRYERPQAG---RYRQFTQIGVELIGP 135

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA-ESGPIGGDLSHEFIVLADTGETQVF- 222
             P          +     +     +        ++       +      +D  E     
Sbjct: 136 EQPTADVDVIACGWQILANLGLTDHITVHLNTLGDTESRNAYRTELVAYFSDHREHLSED 195

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-------------D 269
                   P+   ++  +   +L     ++     A S  H   +              D
Sbjct: 196 SLARLAKNPLRILDSKDEGDRALLPGAPKFVDHLNALSQEHYAAVKAGLDNLGLPYRHDD 255

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           +L                   G + ++     + G        QM   G  A     A++
Sbjct: 256 NLVRGFDYYCHTAFEFITEQLGAQGTVLGGGRYDGLSKLLGGPQMAGVGWAAGVDRLAML 315

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                G+               + +    +V     +++   L   G  V  +  G  + 
Sbjct: 316 LGEAPGEPAPLA---------FVPLGEQAEVV---AQRLVYELRARGVRVDMNYSG-NMK 362

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +   A+ +G    VI+G   ++     ++    G + +++L  ++   S
Sbjct: 363 KRLTRANKVGAQRTVILGEDELNAGIALVRDMEGGEQREVALSSLVEDLS 412


>gi|17554996|ref|NP_498093.1| Glycyl tRNA Synthetase family member (grs-1) [Caenorhabditis
           elegans]
 gi|21264524|sp|Q10039|SYG_CAEEL RecName: Full=Glycyl-tRNA synthetase; AltName: Full=Diadenosine
           tetraphosphate synthetase; Short=AP-4-A synthetase;
           AltName: Full=Glycine--tRNA ligase; Short=GlyRS
 gi|15718659|gb|AAK21465.2| Glycyl trna synthetase protein 1, isoform a [Caenorhabditis
           elegans]
          Length = 742

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 86/310 (27%), Gaps = 20/310 (6%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
              Y         K   +   + + +              ++  +      E +  AD  
Sbjct: 416 LGYYMARCHQFLMKVGIDGRRLRFRQHLSNEMAHYAQDCWDAEILTSYGWIECVGNADRA 475

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
              +       +  + +E    + +       +   A    +     +K+  SL +    
Sbjct: 476 CYDLQQHYKATNVKLVAEKKLPEPVDVNFVEAQANMALLGKSFKKDAKKIQTSLQQLTSE 535

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM------------GSYGIGAMRVV 325
               +E   +       S+         +  +                      G  R++
Sbjct: 536 QVSALEEELLAKKLYNLSVDGQNYALTPEHLNIKKYTKKIHVQEITPSVIEPSYGIGRIM 595

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAH------DQVCRDACEKIYARLSKVGCDV 379
            A++E S   +      +   FK  +  IK        +       + +   LS+     
Sbjct: 596 YALLEHSFRQREGDEQRTFLAFKPLVAPIKCSVLPISANDTLIPVMDAVKEELSRFEMSY 655

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGIREDMSLEEVINY 437
             DD    IG ++A  D +G P  + V    +  +   V I+H  T  +  + + E+   
Sbjct: 656 KVDDSSGTIGRRYARTDEIGIPFGITVDFDSLKTTPFTVTIRHAETMSQIRLEVSELGRL 715

Query: 438 ASHRFSNNRP 447
            S   +  + 
Sbjct: 716 ISDLVAGRQQ 725



 Score = 47.0 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 10/99 (10%)

Query: 14  NPRDA---EIASHKLMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-R 63
            P++A    +    L+ R     Q         G+Y + P+G     N+    R+     
Sbjct: 123 APKEASFDRLKLEDLLKRRFFYDQSFAIYGGVTGLYDFGPMGCSLKANMLQEWRKHFILE 182

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
            G +E+   +L    +   SG  D +   M++     + 
Sbjct: 183 EGMLEVDCTSLTPEPVLKASGHVDRFADWMVKDMKNGEC 221


>gi|325272134|ref|ZP_08138566.1| histidyl-tRNA synthetase [Pseudomonas sp. TJI-51]
 gi|324102730|gb|EGC00145.1| histidyl-tRNA synthetase [Pseudomonas sp. TJI-51]
          Length = 429

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/425 (13%), Positives = 122/425 (28%), Gaps = 26/425 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP            +    +  G  ++  P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPEQSPLWRYFEGTVAGLLDTYGYSQIRTPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            H  +        + I   FR E RP+ G  R    
Sbjct: 70  FEDRNGDSLTLRPEGTAACVRAVLEHGITGNGQVQKLWYIGQMFRHE-RPQKGRYRQFHQ 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
           +  + ++ D     ++       +  L          +     S       D   EF+  
Sbjct: 129 IGVEVFNLDGPDIDAELIMLTWRLWGLLGIQDAVKLELNSLGTSEARARYRDALVEFLSA 188

Query: 214 A------------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
                         +   ++  SKD     +       +D +   S V          + 
Sbjct: 189 RLEQLDEDSQRRLKSNPLRILDSKDQNTQAVLVGAPKLEDYLDEPSRVHFEGLKARLEAA 248

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                +   L       ++ +        G + ++     + G   +         G   
Sbjct: 249 GIPFVINTKLVRGLDYYSKTVFEWVTDKLGAQGTVCAGGRYDGLVEQMGGKPTTGVGFAM 308

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDV 379
                 ++  +          +V  +  +        +    A  ++   L     G  +
Sbjct: 309 GIERLILLLETLGKVPESISRTVDVYLCAFG------EQAELAGLRLSEGLRDRLPGLRL 362

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYA 438
             +  G    SQF  AD  G    +I+G   ++   + +K  R  G +++++ + +  + 
Sbjct: 363 AVNAGGGSFKSQFKKADKSGALFALILGDDELAKQVIGLKPLRGQGEQQNIAWDALAEHL 422

Query: 439 SHRFS 443
               +
Sbjct: 423 ETAIA 427


>gi|115608274|ref|XP_001177835.1| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative), partial [Strongylocentrotus
           purpuratus]
 gi|115609661|ref|XP_794293.2| PREDICTED: similar to Prolyl-tRNA synthetase
           (mitochondrial)(putative), partial [Strongylocentrotus
           purpuratus]
          Length = 89

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
            +AL+ +  +I  E  + G  ++++P +  + LW  SGRY  YG E++ L DR++     
Sbjct: 1   MRALEKLIKVIDTEMQKVGGQKIAMPGMTPSSLWKTSGRYSDYGPELITLQDRHNVDYCL 60

Query: 107 GPTHEEVMTDIFRSHI-KSYRNLPFTFYQ 134
           GPTHEE +TDI       S++ LP   YQ
Sbjct: 61  GPTHEEAVTDIVAGEKTLSHKRLPIKLYQ 89


>gi|301793653|emb|CBW36038.1| seryl-tRNA synthetase [Streptococcus pneumoniae INV104]
          Length = 424

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|15900330|ref|NP_344934.1| seryl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|111657630|ref|ZP_01408364.1| hypothetical protein SpneT_02001184 [Streptococcus pneumoniae
           TIGR4]
 gi|148996814|ref|ZP_01824532.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|149023698|ref|ZP_01836178.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168576870|ref|ZP_02722720.1| seryl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|225860434|ref|YP_002741943.1| seryl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229691|ref|ZP_06963372.1| seryl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254625|ref|ZP_06978211.1| seryl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502204|ref|YP_003724144.1| seryl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A]
 gi|307067059|ref|YP_003876025.1| seryl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|30173203|sp|Q97SG0|SYS_STRPN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783497|sp|C1CPS1|SYS_STRZT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|14971880|gb|AAK74574.1| seryl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|147757389|gb|EDK64428.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|147929635|gb|EDK80627.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|183577467|gb|EDT97995.1| seryl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|225728141|gb|ACO23992.1| seryl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237799|gb|ADI68930.1| seryl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A]
 gi|306408596|gb|ADM84023.1| Seryl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|327390820|gb|EGE89160.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA04375]
 gi|332202320|gb|EGJ16389.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA41317]
          Length = 424

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|168490677|ref|ZP_02714820.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|183575046|gb|EDT95574.1| seryl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
          Length = 424

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|32564541|ref|NP_871640.1| Glycyl tRNA Synthetase family member (grs-1) [Caenorhabditis
           elegans]
 gi|24942974|gb|AAN65294.1| Glycyl trna synthetase protein 1, isoform b [Caenorhabditis
           elegans]
          Length = 678

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 86/310 (27%), Gaps = 20/310 (6%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
              Y         K   +   + + +              ++  +      E +  AD  
Sbjct: 352 LGYYMARCHQFLMKVGIDGRRLRFRQHLSNEMAHYAQDCWDAEILTSYGWIECVGNADRA 411

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
              +       +  + +E    + +       +   A    +     +K+  SL +    
Sbjct: 412 CYDLQQHYKATNVKLVAEKKLPEPVDVNFVEAQANMALLGKSFKKDAKKIQTSLQQLTSE 471

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM------------GSYGIGAMRVV 325
               +E   +       S+         +  +                      G  R++
Sbjct: 472 QVSALEEELLAKKLYNLSVDGQNYALTPEHLNIKKYTKKIHVQEITPSVIEPSYGIGRIM 531

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAH------DQVCRDACEKIYARLSKVGCDV 379
            A++E S   +      +   FK  +  IK        +       + +   LS+     
Sbjct: 532 YALLEHSFRQREGDEQRTFLAFKPLVAPIKCSVLPISANDTLIPVMDAVKEELSRFEMSY 591

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS--KVEIKHRLTGIREDMSLEEVINY 437
             DD    IG ++A  D +G P  + V    +  +   V I+H  T  +  + + E+   
Sbjct: 592 KVDDSSGTIGRRYARTDEIGIPFGITVDFDSLKTTPFTVTIRHAETMSQIRLEVSELGRL 651

Query: 438 ASHRFSNNRP 447
            S   +  + 
Sbjct: 652 ISDLVAGRQQ 661



 Score = 47.0 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 10/99 (10%)

Query: 14  NPRDA---EIASHKLMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-R 63
            P++A    +    L+ R     Q         G+Y + P+G     N+    R+     
Sbjct: 59  APKEASFDRLKLEDLLKRRFFYDQSFAIYGGVTGLYDFGPMGCSLKANMLQEWRKHFILE 118

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
            G +E+   +L    +   SG  D +   M++     + 
Sbjct: 119 EGMLEVDCTSLTPEPVLKASGHVDRFADWMVKDMKNGEC 157


>gi|78713171|gb|ABB50348.1| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
          Length = 431

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 12/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G K    +   + +   + G +E+  P L +++    SG+   +  E  + +   +  +
Sbjct: 178 NGAKLERALINFMLDIHTKNGYLELMPPALVNSESLRGSGQLPKFSNESFKCS---NDDL 234

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T   R+ I   + LP  +      FR E     R   G++R  +F   + 
Sbjct: 235 WLSPTAEVPLTAFHRNEIIDPKQLPIKYVAYSPCFRREAGSYGRDTKGLIRLHQFNKVEL 294

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF----IVLADT 216
           Y F   P  S  ++ K+      I  +L L    +   +G +G   S  F     + +  
Sbjct: 295 YWFC-DPSKSLEAHKKITSDAESILKKLNLPYRLVDICTGDLGFSSSRTFDLEVWLPSSK 353

Query: 217 GETQVFCSKDFMDF 230
              ++    + +DF
Sbjct: 354 CYREISSCSNCLDF 367


>gi|2501005|sp|Q61035|SYHC_MOUSE RecName: Full=Histidyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|1209683|gb|AAC52914.1| histidyl-tRNA synthetase [Mus musculus]
 gi|148664763|gb|EDK97179.1| histidyl-tRNA synthetase [Mus musculus]
          Length = 509

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 65/495 (13%), Positives = 133/495 (26%), Gaps = 66/495 (13%)

Query: 11  LQENPRDAEIA----SHKLMLRTGMIHQHSK---------GIYSWLPLGQKALDNVNAII 57
           L+E    AE      +  L L+  +     K         G   + P      + V  +I
Sbjct: 21  LKEQKASAEQIEEEVTKLLKLKAQLGQDEGKQKFVLKTPKGTRDYSPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +    +G+Y    K +  L D+  + +             
Sbjct: 81  IRCFKRHGAEVIDTPVFELKETL--TGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS--FDLTPEGSKHSYN 175
                 +   L         K      P     R REF   D                  
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLK 193

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPI---GGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            M      +     L  +  R     +    G    +F  +  + +     S + +   +
Sbjct: 194 IMCEILSSLQIGNFLVKVNDRRILDGMFAVCGVPDSKFRTICSSVDKLDKVSWEEVKNEM 253

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDV-------HNEKLFDSLPENKRVSARGIEVG 285
             E     ++        Q     +    +        N++  + L + K +    I  G
Sbjct: 254 VGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQAVEGLGDLKLLFEYLILFG 313

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES--SHDGKGIIWPDS 343
                    SL     +      +  +       G   +    I +   +DG   ++   
Sbjct: 314 IDDKISFDLSLARGLDYYTGVIYEAVLLQMPTQAGEEPLGVGSIAAGGRYDGLVGMFDPK 373

Query: 344 VAPFKISLINIKAHD-----QVCRDACE------------------------KIYARLSK 374
                   ++I         +   +A E                        K+ + L  
Sbjct: 374 GRKVPCVGLSIGVERIFSIVEQRLEASEEKVRTTETQVLVASAQKKLLEERLKLVSELWD 433

Query: 375 VGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G           ++ +Q    +  G PL  I+G + + D  ++++   +    D+  E+
Sbjct: 434 AGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVASREEVDVQRED 493

Query: 434 VINYASHRFSNNRPV 448
           ++     R   N+P+
Sbjct: 494 LVEEIRRR--TNQPL 506


>gi|319637812|ref|ZP_07992578.1| histidyl-tRNA synthetase [Neisseria mucosa C102]
 gi|317400967|gb|EFV81622.1| histidyl-tRNA synthetase [Neisseria mucosa C102]
          Length = 431

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/434 (12%), Positives = 113/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVSRWTRTYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEAQLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IR 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMQGKHEQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++  ++ +    
Sbjct: 414 QTVAAADLTDTLQQ 427


>gi|149012162|ref|ZP_01833271.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|303255391|ref|ZP_07341457.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|303259488|ref|ZP_07345465.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|303262351|ref|ZP_07348294.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|303264769|ref|ZP_07350686.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS397]
 gi|303266608|ref|ZP_07352493.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|303268841|ref|ZP_07354628.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|147763764|gb|EDK70698.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|301801323|emb|CBW34006.1| seryl-tRNA synthetase [Streptococcus pneumoniae INV200]
 gi|302597636|gb|EFL64716.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|302636450|gb|EFL66942.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|302639422|gb|EFL69880.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|302641622|gb|EFL71982.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302643852|gb|EFL74114.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|302645636|gb|EFL75866.1| seryl-tRNA synthetase [Streptococcus pneumoniae BS397]
          Length = 424

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|85057912|ref|YP_456828.1| seryl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|123518041|sp|Q2NIJ4|SYS_AYWBP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|84790017|gb|ABC65749.1| seryl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 424

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 70/205 (34%), Gaps = 12/205 (5%)

Query: 14  NPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            P+D    + KL +    R   I     G      LG +    +   + +  ++ G  E+
Sbjct: 136 TPKDHVYLAEKLDILDFKRASKI--SGSGFVVCKGLGARLERALIQFMMDLHSKKGYQEI 193

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + +      +G+   +  E+ +L +  +      PT E    ++ R  I     LP
Sbjct: 194 IPPYIINEKSMFATGQLPKFEDEVYKLYNSKNNWY-LNPTAEVPTINLHREEIFKPGTLP 252

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
             +      FR E     +   G+ R  +F  K        P+ S     +M      I 
Sbjct: 253 IKYVSYTTAFRQEAGSAGKDTRGIFRQHQFN-KVELIQFCHPQNSYEYLEQMLKDSEEIL 311

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEF 210
             L L    +   +G +G  +S  +
Sbjct: 312 KLLKLPYRVVLLSTGDLGFSMSKTY 336


>gi|326563520|gb|EGE13779.1| histidyl-tRNA synthetase [Moraxella catarrhalis 12P80B1]
          Length = 422

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/414 (13%), Positives = 106/414 (25%), Gaps = 34/414 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR----- 95
           LP    A   +   + E  +  G  ++ +P ++   L+        D   KEM       
Sbjct: 14  LPEQTPAWRAMERTLIEVMDSYGYSQIRLPLVEETQLFARGVGEATDIVEKEMFGVVHGG 73

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                  +    P            H  +  + P  +Y     FR E   +    R R+F
Sbjct: 74  NKGDEGSSFTLRPEGTAGCVRAIVEHNLTRGDTPKLWYL-GPMFRYERPQKG---RYRQF 129

Query: 156 LMKDAYSFDLTPEGSKH----SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                  F      +          M+       H     +     +          E++
Sbjct: 130 HQLGVEYFGAELPDADAELIAMTYHMWQKLGIGEHVTLQLNTLGETDERVAYKSALVEYL 189

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL---- 267
                        +     P+   ++  ++   +     +        S  H EK+    
Sbjct: 190 TTHQEALDDD-SKRRLNTNPLRILDSKDENTQQILQNAPKLGEFLGEASLAHFEKVQNYL 248

Query: 268 ---------FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                     D L        + +        G++ ++     + G  G        S  
Sbjct: 249 SALGISFEINDKLVRGLDYYNKTVFEWVTDKLGSQATVCGGGRYDGLVGIIKGKAEQSEP 308

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                +    +    D        S     +        D       E +  RL +    
Sbjct: 309 AVGFAMGLERLMLLIDAVNPYQVTSWCDVFVIAHPDYYID--GLKYAESL--RLRQDNLR 364

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           V        + SQ   AD  G    VI+    V+ +++ IK   TG +    ++
Sbjct: 365 VKM-ASATGLKSQMKKADKSGAAYTVIIAEDEVNANQITIKTMATGEQRRAPID 417


>gi|307710546|ref|ZP_07646982.1| seryl-tRNA synthetase [Streptococcus mitis SK564]
 gi|307618699|gb|EFN97839.1| seryl-tRNA synthetase [Streptococcus mitis SK564]
          Length = 424

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDSN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|332530162|ref|ZP_08406110.1| histidyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
 gi|332040354|gb|EGI76732.1| histidyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
          Length = 436

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/399 (12%), Positives = 99/399 (24%), Gaps = 32/399 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP   +      A +R+   R G   +  P ++   L+V   G   D   KEM    D  
Sbjct: 15  LPDSAR-WQWFEAAVRKVLARYGYQYILTPIVEPTALFVRGLGEVTDIVEKEMYSFTDSM 73

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
           +   +                  +  N P   + +   FR E   +    +  +  ++  
Sbjct: 74  NGDKLTLRPEGTAGIVRAMIEHNALYNGPLRLWTLGPMFRHERPQKGRYRQFHQLDVEAL 133

Query: 161 YSFDLTPEG---------SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                  +           +              + LG      +     I     H   
Sbjct: 134 GFAGPDVDAEMILVARSLWRELGLIEGQHVRLELNSLGQPEERRQHREALIRHFEQHASQ 193

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSI--VEQWTAPYAATSDVH----NE 265
           +  D            +D   P+  T  +    L      E      A  S +       
Sbjct: 194 LDEDAQRRLHSNPLRILDSKNPAMQTLIEAAPRLFDFLGAESLAHFDAVKSTLDAAGLEY 253

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
           ++   L          +        G++ ++     + G   +       + G G     
Sbjct: 254 RVNPRLVRGMDYYNLTVFEWVTDQLGSQGTVCGGGRYDGLISQLGGKPAPAVGFGLGIER 313

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF----- 380
             ++    +         V         +                 L   G  V      
Sbjct: 314 LLLLAQDLNLPMPGTAPDVYAIVPPGTPLAPVMTTL--------EALRARGLRVVQHAGG 365

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
            D     + SQF  AD  G    ++ G + ++  +V +K
Sbjct: 366 VD-GPGSMKSQFKKADASGAAWALVFGEEELAAGEVTLK 403


>gi|306832797|ref|ZP_07465932.1| serine--tRNA ligase [Streptococcus bovis ATCC 700338]
 gi|304425032|gb|EFM28163.1| serine--tRNA ligase [Streptococcus bovis ATCC 700338]
          Length = 435

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 175 FYKGLGARLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKED---TFELA 231

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 232 DSDYVLIPTAEVPLTNYYRGEILDGKELPVYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 291

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F            KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 292 KVEMVKFSKPETSYDEL-EKMVANAENILQKLGLPYRVITLCTGDMGFSAAKTYDLEVWI 350

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 351 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 381


>gi|300118312|ref|ZP_07056059.1| histidyl-tRNA synthetase [Bacillus cereus SJ1]
 gi|298724281|gb|EFI64976.1| histidyl-tRNA synthetase [Bacillus cereus SJ1]
          Length = 425

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/429 (14%), Positives = 132/429 (30%), Gaps = 45/429 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             +A+            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRALALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFQTLNLEVTIQYNNRKLLNGILQAINIPTELTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPY---AATSD 261
            D  E          V       +      NT    +  S+    E +  P         
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLSIADFKEAFNNPLIADGVNEL 245

Query: 262 VHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++   +L  N+         RG+ +     +          +  G+ G+   +    
Sbjct: 246 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAF 305

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-- 374
            G         +          +           +  I    ++    C +I  +L    
Sbjct: 306 RGDNMNYPTVGISFGLDVIYTALSQKETVSSTADVFIIPLGTELQ---CLQIAQQLRSTT 362

Query: 375 -VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +  ++         G +   A    +    P  +I+G + +S + V +++   G    +
Sbjct: 363 SLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTNTVMLRNMKEGSEVKV 416

Query: 430 SLEEVINYA 438
            L  + NY 
Sbjct: 417 PLSSLSNYL 425


>gi|270293326|ref|ZP_06199535.1| serine--tRNA ligase [Streptococcus sp. M143]
 gi|270278175|gb|EFA24023.1| serine--tRNA ligase [Streptococcus sp. M143]
          Length = 424

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|228966222|ref|ZP_04127283.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228793490|gb|EEM41032.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 425

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 67/423 (15%), Positives = 134/423 (31%), Gaps = 33/423 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  P L   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRTCEDTFERYGCKPLETPMLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFRTLNLEITIQYNNRKLLNGILQAINIPTELTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT    +  S++   + +  P  A      
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLSIDDFKDAFNTPIVADGVNEL 245

Query: 265 EKLFDSLP----ENKRVSARGIEVGHIFYFGTKYS---LPMSATFKGADGKDHYVQMGSY 317
           ++L   L         +    +  G   Y GT Y       S T     G  +   +G++
Sbjct: 246 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAF 305

Query: 318 GIGAMRVVAAVIESSHD-GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV- 375
               +      I    D     +           +  I    ++    C +I  +L    
Sbjct: 306 RGDNISYPTVGISFGLDVIYTALSQKETISSTADVFIISLGTELQ---CLQIAQQLRSTT 362

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V  +  G ++      A+    P  +I+G + +S   V +++   G    + L  + 
Sbjct: 363 SLKVELELAGRKLKRALNYANKENIPYVLIIGEEELSTETVMLRNMKEGSEVKVPLSSLS 422

Query: 436 NYA 438
           +Y 
Sbjct: 423 SYL 425


>gi|156537409|ref|XP_001606827.1| PREDICTED: similar to glycyl-tRNA synthetase [Nasonia vitripennis]
          Length = 737

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/414 (13%), Positives = 120/414 (28%), Gaps = 76/414 (18%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R    +   LPF   QI   FR+E+ PR G++R REF M +   F
Sbjct: 299 FLRPETAQGIFVNFKRLLEFNQEKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHF 358

Query: 164 DLTPEGSKHSYNKMFVS----YLRIFHRLGLKSIPMRA----ESGPIGGDLSHEFIVLAD 215
               + S H ++ +  +    Y       G  +  +      ESG +  +    F+    
Sbjct: 359 CDPSDKSHHKFDSVKDTNMLLYSACNQMDGKSAEYLTIGKAVESGLVANETLGYFMARIQ 418

Query: 216 TGETQV--------FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
               +V        F      +    + +    ++++    VE       +  D+     
Sbjct: 419 KFLVKVGVDPKKLRFRQHMGNEMAHYACDCWDAELLTSYGWVECVGCADRSAYDLTQHTK 478

Query: 268 FDSLP---ENKRVSARGIE-------VGHIFYFGTKYSL--------------PMSATFK 303
              +    E K    + I+        G I     K +                      
Sbjct: 479 ATGVKLVAEKKLPQPKTIDVCEAAPNRGLIGKTFRKEAKVILDALAALEEKDIDALEKDL 538

Query: 304 GADGKD-----------------------------HYVQMGSYGIGAMRVVAAVIESSHD 334
              G+                                  +     G  R++ +V E +  
Sbjct: 539 NEKGEYELQTSDAPYKITKDMITIKRYQKTVHVEEFVPSVIEPSFGIGRIMYSVFEHNFK 598

Query: 335 GKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +              +  +K      + +       +K+   L++V      DD    I
Sbjct: 599 MRDGDEQRRYFSLPPVVAPLKCSVLPLSSNAEFTPFVKKLSQELTRVDVSHKVDDSSGSI 658

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHR 441
           G ++A  D +  P  + +    + +     ++ R +  +  ++LE +       
Sbjct: 659 GRRYARTDEIAIPFGITIDFDTLKEPHSATLRERDSMGQVRINLEVLPAVVRDL 712



 Score = 37.8 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 17/90 (18%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIR------EEQNRTGAIEMSVP 72
           L+ R     Q         G Y + P+G     N+ +  R      E+      +E+   
Sbjct: 131 LLKRRFFYDQSFAIYGGITGQYDFGPMGCAFKANLLSAWRNFFVLEEQM-----LEVDCS 185

Query: 73  TLQSADLWVESGRYDSYGKEMLRLADRNDK 102
            L    +   SG  + +   M++     + 
Sbjct: 186 ILTPESVLKASGHVERFADLMVKDVKNGEC 215


>gi|23015682|ref|ZP_00055451.1| COG0124: Histidyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 412

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 64/418 (15%), Positives = 128/418 (30%), Gaps = 27/418 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G +  LP   +    V  I      R G  E+  P  +  D++  +     D   KEM  
Sbjct: 9   GTHDLLPDESRRHRRVEEIAFSAARRYGFGEIMTPIFEFTDVFARTLGETSDVVTKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            +DR+ +++   P     +   F S     ++LP   +     FR E   +    R R+F
Sbjct: 69  FSDRSGESITLRPEGTAGVARAFISGGL-AQSLPLKLFYRGPMFRHERPQKG---RLRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRI----FHRLGLKSIPMRAESGPIGGDLSHEFI 211
                    +    +      +    L             +    AES     +    ++
Sbjct: 125 HQVGVELLGVESPLADVEVIALAWRVLSELGLASKVRLEINTLGDAESRETYRNTLVAYL 184

Query: 212 VLA------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHN 264
                    D+           +D     +    ++   +N  +       +A  +D  +
Sbjct: 185 SEFREALSEDSRNRLERNPLRILDSKDEGDRRIVENAPLMNDSLSPAAREFFAQVTDGLH 244

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
                 +  ++ V          F F T  +   +     A G+   +     G+    +
Sbjct: 245 ALGIPFVLNSRLVRGLDYYCHTAFEFTT--TELGAQGTVLAGGRYDELIATMGGVRTPGI 302

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             A             P         +  I   D V   A   +  RL ++GC+V     
Sbjct: 303 GWAAGVERLSMLVGDIP----DTVRPISVIPMGDAV---AAMVVAERLRRMGCNVEMGFS 355

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G  +  + A A+ +     VI+G +  +   V I+   T  ++++ L ++  +     
Sbjct: 356 G-NMKKRMARANKVNARFAVILGEEESARKAVTIRDLDTSTQDEVPLAQLEEHLGRLL 412


>gi|312867885|ref|ZP_07728090.1| serine--tRNA ligase [Streptococcus parasanguinis F0405]
 gi|311096640|gb|EFQ54879.1| serine--tRNA ligase [Streptococcus parasanguinis F0405]
          Length = 425

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E        +      I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYDELEKMVVN-AENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|289168522|ref|YP_003446791.1| seryl-tRNA synthetase [Streptococcus mitis B6]
 gi|288908089|emb|CBJ22929.1| seryl-tRNA synthetase [Streptococcus mitis B6]
          Length = 424

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDSN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|225853986|ref|YP_002735498.1| seryl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|254783495|sp|C1CCH7|SYS_STRZJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|225723288|gb|ACO19141.1| seryl-tRNA synthetase [Streptococcus pneumoniae JJA]
          Length = 424

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSTAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|319947603|ref|ZP_08021833.1| serine--tRNA ligase [Streptococcus australis ATCC 700641]
 gi|319746291|gb|EFV98554.1| serine--tRNA ligase [Streptococcus australis ATCC 700641]
          Length = 446

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 186 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 245

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 246 ---YVLIPTAEVPLTNYYRDEIIDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 302

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    M   +G +G   +     E  +
Sbjct: 303 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVMALSTGDMGFSAAKTYDLEVWI 361

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 362 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 392


>gi|33240229|ref|NP_875171.1| histidyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|39932092|sp|Q7VCG1|SYH_PROMA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|33237756|gb|AAP99823.1| Histidyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 421

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 60/411 (14%), Positives = 117/411 (28%), Gaps = 33/411 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP        V  +  +   R G  E+  P L+  +L+        D  GKEM  
Sbjct: 9   GMVDLLPSHSARWQKVETLAIKNFERAGIKEIRTPILELTELFSRGIGEATDVVGKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  ++    P     +      +    +  P   +     FR E        R R+F
Sbjct: 69  FEDRGGRSCTLRPEGTASVARAVIQNGLLKQG-PQRLWYGGPMFRYERPQAG---RQRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                  F L+   S      +   +L       LK       +     +   + I   +
Sbjct: 125 HQIGVEFFGLSSVRSDAELISIAWDFLNELGLRNLKLQINTLGTSEDRKNYRSKLISWLE 184

Query: 216 TGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
                +           P+   ++   +I  L +           +S    E L   L  
Sbjct: 185 NFPELLGEDSLNQLKKNPLRILDSKNSNIQKLINDAPLLGDHLNQSSINRFESLQKVLNT 244

Query: 274 NK------RVSARGIE--VGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
            K      +   RG++      F       G + ++     + G    +      +  IG
Sbjct: 245 LKIPFSVNQRLVRGLDYYCHTAFEIISDDLGAQATVCGGGRYDGLV--EQLGGPHAPAIG 302

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
               +  ++    D         V              +        +  +L      V 
Sbjct: 303 FAVGMERLLILIGDRLANEIHPDVYLIN--------KGEKAEAEALLLARQLRLQDFIVE 354

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGIREDM 429
            DD G     QF  A+ +G    +++G + ++  ++ +K        + ++
Sbjct: 355 LDDSGAAFAKQFKRANRVGATWAIVIGDEEINKGEIRLKRMKVLNKDKNEI 405


>gi|307704266|ref|ZP_07641185.1| seryl-tRNA synthetase [Streptococcus mitis SK597]
 gi|307622177|gb|EFO01195.1| seryl-tRNA synthetase [Streptococcus mitis SK597]
          Length = 424

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDSN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|254786615|ref|YP_003074044.1| histidine--tRNA ligase [Teredinibacter turnerae T7901]
 gi|237683869|gb|ACR11133.1| histidine--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 423

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/409 (12%), Positives = 113/409 (27%), Gaps = 30/409 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        + A I +     G  E+  P L++ +L+  S G   D   KEM  
Sbjct: 9   GMNDLLPADSPYWQYLEATITDVVQGYGFQEIRFPILEATELFKRSIGEVTDIVEKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP--FTFYQIQLKFRDELRPRFGVMRSR 153
             DRND+++   P            H   Y         + +   FR E   +  + +  
Sbjct: 69  FLDRNDESVTLRPEGTASCVRACEQHQLLYNRGTIAQKLWYMGPMFRYEKPQKGRLRQFH 128

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           +  ++         +            +  +     ++       +     +     +  
Sbjct: 129 QIGVEAYGIASADADA--ELLIMTARLWKTLGIDDAVELQINSLGTNEARANFRAALVDF 186

Query: 214 ADTGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE------ 265
               E ++     +     P+   ++   D  +L +            S  H        
Sbjct: 187 LSANEAKLDEDSQRRLATNPLRILDSKDADTQALLADAPDLADFLDDESREHFALLQRYL 246

Query: 266 -------KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                   +   L       +R +        G + ++     + G   +       + G
Sbjct: 247 TAAGVKFTVNTRLVRGLDYYSRTVFEWVTNRLGAQGTVCAGGRYDGLVAQLGGQNTPAVG 306

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--G 376
                    ++    +        +   + ++L N              +  +L +    
Sbjct: 307 FAMGLERLVLLVQELNAFPKDISRAADVYLLALGN-------VIPEAFALTEQLREQAPH 359

Query: 377 CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
             V  +       SQ   A+  G  + +I+G    S  +V +K+  +  
Sbjct: 360 LRVQMNTGAGSFKSQMKKAERSGADVVLILGEDEASAGEVTVKYLRSDE 408


>gi|41614900|ref|NP_963398.1| histidyl-tRNA synthetase [Nanoarchaeum equitans Kin4-M]
 gi|46396587|sp|P60922|SYH_NANEQ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|40068624|gb|AAR38959.1| NEQ102 [Nanoarchaeum equitans Kin4-M]
          Length = 404

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 64/418 (15%), Positives = 125/418 (29%), Gaps = 38/418 (9%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            + P        + + I     + G   +  P ++  D        ++  KE+ R     
Sbjct: 10  DFTPELAILWKEIVSKIESVYQKYGFDPIITPIVEYWDTLKGKYGEEAEKKEIWRFRVPQ 69

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            K        + V   + R   +    LPF  Y I   FR +   +    R REF   DA
Sbjct: 70  SKKWYALKYDQTV--PLARYFARFRPKLPFKRYTIDRTFRYDEPQKG---RYREFWQADA 124

Query: 161 YSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
                  PE      N M  +Y  +   + L+    RA    I      E     +    
Sbjct: 125 DIVGSPYPEADAEILNMMIEAYETLGFNVYLRVSDRRALESLIEKVG--EKDKFIEIARI 182

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS--DVHNEKLFDSLPENKRV 277
                K   +  +       D    +  ++++    +      ++ +     +  +    
Sbjct: 183 IDKWDKIGEEGVLEKLKQITDKAEKIIELLKENPEEFYPKEFWEIIDLVEKKNKIKIDIK 242

Query: 278 SARGIEVGH-----IFYFGTKYSLPMSATFKGADGKDHYVQMGSYG--IGAMRVVAAVIE 330
            ARG +        ++  G   +L     +    G     ++ + G  IG   ++   +E
Sbjct: 243 LARGFDYYTGMVYEVWIEGFNRALGGGGRYDNLIGIFSKEKIPAVGGSIGINPLIDVGLE 302

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD--MGEQI 388
                        +A   I                 +I  +L  +G +V+ D      + 
Sbjct: 303 KGIFNLNKKTYTQIAVIYI----------EVFKEAWRIANKLRDLGLNVYIDLLRRDFK- 351

Query: 389 GSQFAVAD---LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
                  +          VIVG K ++++ V  + RLT  R+ + +E +         
Sbjct: 352 ----KQMEYVIEKDIRYLVIVGKKDLANNLVTFQDRLTRERKKIPIENL-EEIKSLVQ 404


>gi|290980470|ref|XP_002672955.1| predicted protein [Naegleria gruberi]
 gi|284086535|gb|EFC40211.1| predicted protein [Naegleria gruberi]
          Length = 673

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 41/99 (41%)

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           + N K      +   EK+   +  +      D+    IG ++  AD +G P+ + +  + 
Sbjct: 575 VSNCKVKTNEEKMVLEKVTKIIRTLSIPFKHDESAHSIGKKYKRADEIGIPIAITIDEES 634

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           + ++ V I+ R T ++E + L  +           R +L
Sbjct: 635 LLNATVTIRFRDTCLQERVELSVLHQVLFGLIMMQREIL 673


>gi|254446503|ref|ZP_05059979.1| histidyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
 gi|198260811|gb|EDY85119.1| histidyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
          Length = 440

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/442 (12%), Positives = 127/442 (28%), Gaps = 45/442 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLR 95
            G   + P       ++  I R+   R    E   P L+S +L+  +SG       ++  
Sbjct: 8   PGFREFYPEDYAQRKHIFQIWRQVARRFAFKEFDGPVLESLELFTAKSG--PEIESQLFC 65

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+  + +   P     +  +  +     +  P  ++ I   FR E   +  +     F
Sbjct: 66  FEDKGGRQVSLRPELTPSLARMVAARANGLKR-PIKWFSIGDNFRYERMQKGRLRC---F 121

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +          ++     + V  L  F           ++       L  E +   +
Sbjct: 122 TQLNVDLLGEPGPAAEVELIALLVQTLLGFGLSEEDFFVRLSDRNLWM--LYLETLGYDE 179

Query: 216 TGETQVFCSKDFMD-FPIPSENTDFDDIIS-----LNSIVEQW----------TAPYAAT 259
                +    D  +  P         ++       L + V+ +          +      
Sbjct: 180 EAIGGILGVVDKWERLPEEKLLAQLQEVAGERAAELKAAVDGFLKLDSVEGIRSCFAELE 239

Query: 260 SDVHNEKLFDSLPENKRVSARGI-EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY- 317
            D  + +   +   + +    G+  +G   +     S+     +      + + + G + 
Sbjct: 240 QDAASAEALAARLADWQQLLEGLGAMGLADFIKIDLSIVRGLAYYTGFVFEAFDKKGEFR 299

Query: 318 -GIGAMRV-----------VAAVIESSHDGKGIIWPDSVAPFKISLINIK-----AHDQV 360
              G  R            + AV     D        +       +  +        D  
Sbjct: 300 ALAGGGRYDALVEKMGGPDMPAVGFGMGDVVLGELLKARGKMPEFVDTVDFFAVIGGDAE 359

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                E++   L + G  V +    +  G QF  A   G    +IVGS+ +    V++++
Sbjct: 360 KLAVLEEVA-LLRQAGYSVEYQLKPQAFGKQFKAATSSGARFALIVGSEELEKGVVKLRN 418

Query: 421 RLTGIREDMSLEEVINYASHRF 442
                 +++   +++       
Sbjct: 419 LADRSEQEIPRGQLLEAVRGLI 440


>gi|123968914|ref|YP_001009772.1| seryl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
 gi|166222764|sp|A2BSA4|SYS_PROMS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123199024|gb|ABM70665.1| Seryl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
          Length = 425

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 76/194 (39%), Gaps = 12/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +   + +   + G +E+  P L +++    SG+   +  E  + +   +  +
Sbjct: 172 NGARLERALINFMLDMHTKNGYLELMPPALVNSESLTGSGQLPKFSNESFKCS---NDDL 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T + R+ +   ++LP  +      FR E     R   G++R  +F   + 
Sbjct: 229 WLSPTAEVPLTALHRNELIDPKHLPLKYVAYSPCFRREAGSYGRDTKGLIRLHQFNKVEL 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF----IVLADT 216
           Y F   P  S  ++ ++      I  +L L    +   +G +G   S  F     + +  
Sbjct: 289 YWFC-DPSKSLEAHKEITTDAESILKKLNLPYRLVDICTGDLGFSSSRTFDLEVWLPSSK 347

Query: 217 GETQVFCSKDFMDF 230
              ++    + +DF
Sbjct: 348 CYREISSCSNCLDF 361


>gi|117926864|ref|YP_867481.1| histidyl-tRNA synthetase [Magnetococcus sp. MC-1]
 gi|117610620|gb|ABK46075.1| histidyl-tRNA synthetase [Magnetococcus sp. MC-1]
          Length = 400

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 59/408 (14%), Positives = 115/408 (28%), Gaps = 34/408 (8%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              + + +R    + G  E+ +P  +  +L+  +     D   KEM    DR  +++   
Sbjct: 8   WQFIESTLRRVFGQYGFGEIRIPLFEKTELFARAVGETTDIVEKEMYTFEDRGGESLALR 67

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F ++    R LP+  Y I   FR E   +    R R+F    A  F    
Sbjct: 68  PEGTASVVRSFINNGLD-RQLPWKAYYIGPMFRYERPQKG---RYRQFHQAGAELFGAEG 123

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV---LADTGETQVFCS 224
             +      M +  L+     G   + + +   P         +     +  G     C 
Sbjct: 124 PLADAEIMAMVLRSLQEIGIAGQLQLEINSLGCPACRPAYRAQLTDYLQSHHGALCGNCQ 183

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------------- 271
                 P+   +   +   ++     +      A  D H   L   L             
Sbjct: 184 NRLERNPLRVLDCKVESCKAIAKEAPKMRDHLCAGCDHHFAGLTAHLDALQLPYVINPMM 243

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   R          G + ++     + G   +       + G        A++  
Sbjct: 244 VRGLDYYTRTAFEVTTNALGAQNAVAAGGRYDGLVTEMGGKATPAIGFAMGLERLALLMD 303

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                  +    V   +         D       E++       G  V  +  G  + SQ
Sbjct: 304 ESAIAPPLPALYVVSLEA--------DTAAFGFAEQV----RGAGLAVEVNLQGGSMKSQ 351

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              A         I+G     + +V +K    G +  +S +E ++   
Sbjct: 352 MKKAGRSNARWCAIIGQTEAQNQQVVLKDMQEGAQATLSWDEALHRIR 399


>gi|229031003|ref|ZP_04187019.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH1271]
 gi|228730350|gb|EEL81314.1| Histidyl-tRNA synthetase 1 [Bacillus cereus AH1271]
          Length = 425

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 62/423 (14%), Positives = 129/423 (30%), Gaps = 33/423 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRELALRYDLTIPFAKVVA--MNPSIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ES  I  + + + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILESINIPTERTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPY---AATSD 261
            D  E          V       +      NT    +  ++    E +  P         
Sbjct: 186 LDKIEKIGINGVRKDVLERGISEEMADMICNTVLSCLKLTIADFKEAFNTPLVAEGVNEL 245

Query: 262 VHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++   +L  N+         RG+ +     +          +  G+ G+   +    
Sbjct: 246 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAF 305

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV- 375
            G         +          +           +  I    ++    C +I  +L    
Sbjct: 306 RGDNMNYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGTELQ---CLQIVQQLRSTT 362

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V  +  G ++      A+    P  +I+G + +S   V +++   G    + L  + 
Sbjct: 363 SLKVELELAGRKLKRALNYANKENIPYVLIIGEEELSTETVMLRNMKEGSEVKVPLSSLN 422

Query: 436 NYA 438
           +Y 
Sbjct: 423 SYL 425


>gi|228909131|ref|ZP_04072959.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis IBL 200]
 gi|228850452|gb|EEM95278.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis IBL 200]
          Length = 436

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/421 (16%), Positives = 135/421 (32%), Gaps = 33/421 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRTCEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLKDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRELTLRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFRTLNLEITIQYNNRKLLNGILQAINIPTELTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT    +  S+++  + +  P  A      
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLSIDNFKDAFNTPLVADGVNEL 245

Query: 265 EKLFDSLP----ENKRVSARGIEVGHIFYFGTKYS---LPMSATFKGADGKDHYVQMGSY 317
           ++L   L         +    +  G   Y GT Y       S T     G  +   +G++
Sbjct: 246 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAF 305

Query: 318 GIGAMRVVAAVIESSHD-GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV- 375
               +      I    D     +           +  I    ++    C +I  +L    
Sbjct: 306 RCDNISYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGTELQ---CLQIAQQLRSTT 362

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V  +  G ++      A+    P  +I+G + +S   V +++   G    + L  + 
Sbjct: 363 SLKVELELAGRKLKRALNYANKENIPYVLIIGEEELSTETVMLRNMKEGSEVKVPLSSLK 422

Query: 436 N 436
           N
Sbjct: 423 N 423


>gi|171778068|ref|ZP_02919325.1| hypothetical protein STRINF_00160 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283050|gb|EDT48474.1| hypothetical protein STRINF_00160 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 425

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           +   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 NSDYVLIPTAEVPLTNYYRGEILDGKELPVYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F            KM  +   I  +LGL    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFSKPETSYDEL-EKMVANAENILQKLGLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|332188256|ref|ZP_08389984.1| histidyl-tRNA synthetase [Sphingomonas sp. S17]
 gi|332011755|gb|EGI53832.1| histidyl-tRNA synthetase [Sphingomonas sp. S17]
          Length = 440

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/403 (12%), Positives = 97/403 (24%), Gaps = 21/403 (5%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIY 106
            L     +            + +P  +   ++  S     D   KEM    DR    +  
Sbjct: 27  VLRTFEQV----HELYAFQRLDLPVFEDTQVFARSIGETTDVVSKEMYTFPDRGGDMLTL 82

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +   + +        P         FR E   +    R R+F   DA      
Sbjct: 83  RPEFTAGIARAYLTEGWQQYA-PLKLVTSGPVFRYERPQKG---RYRQFHQIDAEILGAA 138

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK- 225
              +      M    L         ++ +         D   + +V              
Sbjct: 139 EPAADVELLVMADQLLHELGIAEGVTLQLNTLGDAETRDAWRDALVAHFEAHRDQLSEDS 198

Query: 226 --DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
                  P+   ++       +        A     +    E +   L        R   
Sbjct: 199 LVRLEKNPLRILDSKDPRDRPIADAAPDIDAYLTPEARAFFEAVTAGLDAAGVAWTR--- 255

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA----VIESSHDGKGII 339
              +      Y            G    V  G    G +  +       +  +   + + 
Sbjct: 256 NARLVRGLDYYRHTAFEFVTDRLGAQGTVLAGGRYDGLIESLGGPATPGVGWAAGVERLA 315

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
                    +    +             + A L + G        G  +  + A A+  G
Sbjct: 316 MLLDEPAKPVIDAVVVPMGAAAELRATGLVAELRRAGVATDMAFRG-NMKRRMAKANDQG 374

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               +I+G   +++ +V++K   TG +  + LE V        
Sbjct: 375 ASYALILGDDELANGQVQVKALATGEQATVPLESVSQSIFDLL 417


>gi|78777328|ref|YP_393643.1| histidyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
 gi|123754715|sp|Q30RH3|SYH_SULDN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|78497868|gb|ABB44408.1| histidyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
          Length = 403

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 59/379 (15%), Positives = 115/379 (30%), Gaps = 13/379 (3%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            R G   +  P L+   L+  S     D  GKEM +  D+ +  +   P     +   F 
Sbjct: 31  QRYGFHFIETPLLEETALFKRSVGESSDIVGKEMYQFVDKGENDVCLRPEGTAGVVRAFV 90

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
                       F+     FR E   +  + +  +F ++      +  + S        +
Sbjct: 91  QKKLDRAGGIHRFFYHGAMFRYERPQKGRLRQFHQFGVESFGESSVYEDASMIMMASDIL 150

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L I +RL L S+       P    L +   V     E    C++     PI   +   
Sbjct: 151 KELGIGYRLQLNSLGCNECMPPYREKLIN--FVTKHKDEICEDCTRRVETNPIRVLDCKN 208

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMS 299
           +   S+ +   +      +T +     L   L +N+      I+   +      YS    
Sbjct: 209 EKCQSIYTEAPKLLNCLCSTCESDFTTLKMILKQNE--IDFEIDTNLVRGL-DYYSKTAF 265

Query: 300 ATFKGADGKDHYVQMGSY----GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
                  G    +  G                 +  +   + ++    +   K     + 
Sbjct: 266 EFVSDNIGSQSAIAGGGRYDRLVEFLDGRPTPAVGFAMGIERLMELIIMPEAKKDGYYLG 325

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
           A D    D   KI  +  K    V  +   + + +    AD        ++GS  + D  
Sbjct: 326 AMDDEALDMIVKIAQKKRKSDI-VILEYKTKNLKNHLKAADKSNAKYCAVIGSNEIKDGT 384

Query: 416 VEIKHRLTGIREDMSLEEV 434
           + +K+      + + L E+
Sbjct: 385 IWVKNLEDKTEKTI-LSEL 402


>gi|315647593|ref|ZP_07900695.1| histidyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315277032|gb|EFU40373.1| histidyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 426

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 60/426 (14%), Positives = 121/426 (28%), Gaps = 30/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW--VESGRYDSYGKEMLR 95
           G Y +    Q     V + +R+        EM    L   +L     +G  +   KEM +
Sbjct: 6   GTYDYFGKEQAVRRKVQSTLRDVFESYDYEEMESTILNERELLSSKYAG-GEEIQKEMYQ 64

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +            +          LPF  +++   FRD    R    R REF
Sbjct: 65  LTDQGKRDLGLRYDLTIPFAKVIA--FNPGIELPFKRFEMGKVFRDGPVKRG---RLREF 119

Query: 156 LMKDAYSFDLT------PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           L  D     +                   +    +      + +    ES  +  ++   
Sbjct: 120 LQCDVDVVGIPGPEAEVELMQLAVEAFRRLEIPVLLRWNNSRFLGEVLESMGVPAEMKST 179

Query: 210 FIVLADTGE---TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            ++  D  E    +    +       P       + + L     +         D    +
Sbjct: 180 VMLTLDKIEKIGREGVRQELVSKVLAPEVCDHILEFVDLKEPSFEQIVGRYRVGDNPGAR 239

Query: 267 LFDSLPENKRVSARGIEV--------GHIFYFGTKYSLPMSA----TFKGADGKDHYVQM 314
               L +  +      +         G  FY GT Y +   +    +  G  G+   +  
Sbjct: 240 EVQMLQDMLQRVGLEQDCVFDPFLSRGLSFYTGTVYEIFDVSGSYRSSLGGGGRYDAIIA 299

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
              G   +      +    +    +  +         + +        +   +  A L  
Sbjct: 300 HLVGRDDIAYPTVGLSFGMESIMEMIRNRPMGTSKPQVIVIPIGDAIPE-GLRAAAVLRN 358

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
            G    +   G ++    + A   G P  +++G +  +  +V +K         M LEEV
Sbjct: 359 QGLRTEFAHNGRKLKKTLSKASSDGIPYVILIGEEEAAAGQVRLKDMHENTEVQMRLEEV 418

Query: 435 INYASH 440
           + +   
Sbjct: 419 VAFMKQ 424


>gi|326403022|ref|YP_004283103.1| histidyl-tRNA synthetase [Acidiphilium multivorum AIU301]
 gi|325049883|dbj|BAJ80221.1| histidyl-tRNA synthetase [Acidiphilium multivorum AIU301]
          Length = 411

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/390 (14%), Positives = 113/390 (28%), Gaps = 29/390 (7%)

Query: 64  TGAIEMSVPTLQSADLW-----VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            GA E + P  +   ++       S   D   KEM    DR+ +++   P     +    
Sbjct: 35  YGAAEWATPVFELTSVFARNLGETS---DVVTKEMYTFEDRSGESVTLRPEGTAGVCRAL 91

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            S+  + + LP   +     FR E   +    R R+F              +        
Sbjct: 92  VSNGLT-QTLPQKIFYQGPMFRYERPQKG---RYRQFHQIGLEIIGAAEPLADAEAIACG 147

Query: 179 VSYLR----------IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
              L             + LG +       +  +     +E  +  ++    V      +
Sbjct: 148 QQILDELGVGASITLHINTLGDRDSRDAYRTALVDYLSRYESELSDESKVRLVKNPLRIL 207

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           D    ++     D   +   +   +A +             +  EN R+        H  
Sbjct: 208 DTKDANDIRLLADAPLIYDHLNPASAAFYDGLKAALSAFGIAFVENPRIVRGFDYYNHTA 267

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           +     +L    T  G    D  V+            AA IE        +   +     
Sbjct: 268 FEFVSTALGAQGTVLGGGRYDQLVEQMGGPPTPGVGWAAGIER-----LAMLLAATPATP 322

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
             +  I   +     A  +I A L + G        G  +  +   A+ +     V++G+
Sbjct: 323 RPVAVIPMGEAEQT-AAIEILATLRRAGIAAEAAYRG-NLKKRLERANRINARAAVLIGA 380

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             ++   V +K    G + ++   E++   
Sbjct: 381 DELARGAVTLKTLDDGAQRELPRAELLAAL 410


>gi|322386847|ref|ZP_08060471.1| serine--tRNA ligase [Streptococcus cristatus ATCC 51100]
 gi|321269129|gb|EFX52065.1| serine--tRNA ligase [Streptococcus cristatus ATCC 51100]
          Length = 446

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 92/260 (35%), Gaps = 21/260 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 186 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 245

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 246 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 302

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 303 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 361

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD----IISLNSIVEQWTAPYAAT-----SDVH 263
            A     ++    +  DF        + D     + L   +         T      +  
Sbjct: 362 PAQNTYREISSCSNTEDFQARRAQIRYRDEADGKVKLLHTLNGSGLAVGRTVAAILENYQ 421

Query: 264 NEKLFDSLPENKRVSARGIE 283
           NE    ++PE  R    G+E
Sbjct: 422 NEDGSVTIPEVLRPYMGGLE 441


>gi|332686838|ref|YP_004456612.1| histidyl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
 gi|332370847|dbj|BAK21803.1| histidyl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
          Length = 429

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 60/418 (14%), Positives = 123/418 (29%), Gaps = 19/418 (4%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLAD 98
             LP   +    +    R         E+  P  ++ ++   S     D   KEM    D
Sbjct: 11  DLLPSMSEKWQFIEETARLLFKDYQYKEIRTPIFENYEVIARSVGDTTDIVSKEMYDFYD 70

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
           + D+ +   P     +   F  +         P+  Y +   FR E        R R+F 
Sbjct: 71  KGDRHITLRPEGTAPIVRSFVENKLFGPEYAKPYKTYYMGPMFRYERPQAG---RLRQFH 127

Query: 157 MKDAYSF-DLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVL 213
                +F    P             + ++  +     I    +  +         +++  
Sbjct: 128 QIGIETFGSENPAIDVEGMAMALDYFNQLGIKQIKLVINSLGDKETRTNYRQALIDYLEP 187

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP- 272
               E      +   + P+   ++       + S         +  S VH + + + L  
Sbjct: 188 R-IDELSEDSRRRLYNNPLRVLDSKDKKDQFVVSEAPSILDYLSEKSKVHFDTVINMLNA 246

Query: 273 -----ENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                E      RG++     IF   ++     +     A G+   +     G       
Sbjct: 247 LNITYEIDSNMVRGLDYYTNTIFEIMSEAPGMGAQASICAGGRYDGLVEELGGPATSGFG 306

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A+              ++       + +    +       K+   +   G     D M 
Sbjct: 307 FAMGVERLLLTMEAEQLTIPSADYLDVYVVGIGEEANLESLKLVQAIRNFGFSADRDFMN 366

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +  +QF  AD L   L + +GS+ + +  V+I+       +  S +EV +  S  +S
Sbjct: 367 RKPKAQFKTADKLKAQLVLTIGSEELLERNVKIRSLKDHKEQTFSFDEVYDDFSAIYS 424


>gi|325265764|ref|ZP_08132451.1| histidine--tRNA ligase [Kingella denitrificans ATCC 33394]
 gi|324982747|gb|EGC18372.1| histidine--tRNA ligase [Kingella denitrificans ATCC 33394]
          Length = 430

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/398 (13%), Positives = 113/398 (28%), Gaps = 30/398 (7%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            R G  ++  P ++   L+V S     D  GKEM   +D ND   +              
Sbjct: 41  RRFGYAQIRTPIVEQTGLFVRSIGEETDVVGKEMYTFSDSNDTLSLSLRPEGTASCLRAV 100

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
                    P   + +   FR E   +    R R+F      +              M  
Sbjct: 101 VEHSLLHAAPQKLWYMGPMFRRERPQKG---RYRQFHQVGIEALGFAEPDIDAEIIAMCA 157

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF---CSKDFMDFPIPSEN 236
              R        ++ + +             +V   T           +     P+   +
Sbjct: 158 DLWRELGIAEHLTLEINSLGNREERAAHRTALVAYLTQHEDKLDEDSKRRLHTNPLRVLD 217

Query: 237 TDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-------------DSLPENKRVSARGIE 283
           +   D+ ++ +   + T      S  H + +                L        + + 
Sbjct: 218 SKNPDLQAICNAAPRLTDYLGEESRRHYDTVKSLLDGLGIRYTENPRLVRGLDYYNQTVF 277

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                  G + ++     + G    +      +  IG    +  ++    D   +   ++
Sbjct: 278 EWTTDKLGAQATVCGGGRYDGLI--EELGGKPAASIGFAMGIERLLLLVRDYGSLHADNA 335

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
              F +         +    A  +  A L + G +V       ++ +QF  AD  G    
Sbjct: 336 PDVFVMQQG------EGSTLAAMQYAAALRQAGFNVAQFLGSTKLKNQFKRADDSGAKFA 389

Query: 404 VIVGSKFVSDSKVEIKHRLTGI-REDMSLEEVINYASH 440
           +I+    + + +V +K    G  +  +   E+I   + 
Sbjct: 390 LIIAESELENRQVTLKDLRGGKGQVTVPAAELITQLTQ 427


>gi|320101387|ref|YP_004176979.1| histidyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
 gi|319753739|gb|ADV65497.1| histidyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
          Length = 434

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/433 (14%), Positives = 128/433 (29%), Gaps = 49/433 (11%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEML 94
           P G +          + +  + RE   R G   +  PT++   L+  +SG  +   + M 
Sbjct: 10  PRGMRDIVGVEAELHEYLADVFRETARRHGFKPIITPTVEYFKLFEMKSG--EEIKRSMY 67

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              D+  + +   P     +   +   +++       +Y  Q    +E +      R RE
Sbjct: 68  VFQDKAGRTLALRPEVTASVVRAYLKEMRALPKPVRLYYVAQCFRYEEPQ----KARYRE 123

Query: 155 FLMKDAYSFDLTPEGSKHSYNK------------------MFVSYLRIFHRLGLKSIPMR 196
           F              +  S                        +Y  +  ++G+      
Sbjct: 124 FWQGGLEVIGDPDINADASVAFAASSFLEAVGVKHYYVVGNVSTYRVLMDKMGVPGETQD 183

Query: 197 AESGPIGGDLSHEFI------VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                I  D   + +      V     E         +D                 + +E
Sbjct: 184 LILHLIDKDRVGDALKVLGGVVTGGHVELFNKLLNSGLDEAPGILREFRLLGEGEQTTLE 243

Query: 251 QWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
              A      D+ N+  F ++ E + V       G IF +  K S  ++ +     G   
Sbjct: 244 AELARTREFIDLLNQMGFHAVYEPRLVRGLAYYSGLIFEY--KTSEGLTVSI----GGGG 297

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
                +   G     +  +    D   ++     A  + SLI +   + V   A  ++  
Sbjct: 298 RYDGLTRVYGGEYEYSTGLALGLDRIALLLSPEKAVPRRSLIVVSILEGVPLKAGYELVK 357

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM- 429
           R++  G  V        +      A+  G    VI+G + +    V +K   TG++  + 
Sbjct: 358 RITSGGLAVIP-YRARTVSKALGFANKQGADAVVILGRRELESGVVTVKDMHTGMQSTIE 416

Query: 430 --SLEEVINYASH 440
               + +I     
Sbjct: 417 AGDTDALIKLLEK 429


>gi|18568262|gb|AAL75994.1|AF466646_2 glycyl-tRNA synthetase [Zea mays]
          Length = 199

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
            P  +  + +   +Q    A ++I   L+ VG     D     IG ++   D +G P  V
Sbjct: 111 RPVHVHCVPLV-KNQEFDAAAKEITKALTTVGISHIIDTTAISIGRRYGRTDEIGVPFVV 169

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
                 +  + V I+ R    +  + + EV +   
Sbjct: 170 A-----MDSTNVTIRERDDKEQIRVDINEVASVVK 199


>gi|255556918|ref|XP_002519492.1| histidyl-tRNA synthetase, putative [Ricinus communis]
 gi|223541355|gb|EEF42906.1| histidyl-tRNA synthetase, putative [Ricinus communis]
          Length = 503

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/413 (13%), Positives = 128/413 (30%), Gaps = 29/413 (7%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDK 102
           P   +  + +    RE     G  E+  P L++  L+  ++G  +    ++    DR ++
Sbjct: 97  PEEMRLRNWLFNNFREVSKLYGFEEVDFPVLETEALFIRKAG--EEIRDQLYCFEDRGNR 154

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +   P     +  +     KS   LP  ++ +   +R E   R    R RE    +   
Sbjct: 155 RVALRPELTPSLARLVIQKGKS-VPLPLKWFAVGQCWRYERMTRG---RRREHYQWNMDI 210

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
             +    ++       V++ +             +    +   L    I     G+  + 
Sbjct: 211 IGVPGVTAEAELISSIVTFFKRIGITASDVGFKVSSRKVLQEVLRCYSISDNLFGKVCII 270

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL----FDSLPENKRVS 278
             K     P+     +   +      VE+     +  S    E++     +++ + K++ 
Sbjct: 271 IDK-IEKIPVAEIKKELKSVGMSEEAVEELLQVLSIKSLTKLEEILGGAGEAIGDLKQLF 329

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFK--------GADGKDHYVQMGSY-----GIGAMRVV 325
           +   + G+  +     S+     +           +GK   +  G              +
Sbjct: 330 SLAEKFGYSEWIQFDASVVRGLAYYTGIVFEGFDREGKLRAICGGGRYDRLLSTFGGDDL 389

Query: 326 AAVIESSHDGKGIIWPDSVAPFK----ISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            A      D   +                   + A D   + A  ++   L + G +V  
Sbjct: 390 PACGFGFGDAVIVELLKEKGLLPELGLQVENIVCALDSDLQGAAARVATILREKGQNVDL 449

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               + +   F  A  +     V+VG        V +K   TG + ++ L+E+
Sbjct: 450 VLEDKPLKWVFKRAARINAQKLVLVGKTEWQKGMVGVKILSTGEQYEVKLDEL 502


>gi|74211893|dbj|BAE29290.1| unnamed protein product [Mus musculus]
          Length = 509

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 65/495 (13%), Positives = 132/495 (26%), Gaps = 66/495 (13%)

Query: 11  LQENPRDAEIA----SHKLMLRTGMIHQHSK---------GIYSWLPLGQKALDNVNAII 57
           L+E    AE      +  L L+  +     K         G   + P      + V  +I
Sbjct: 21  LKEQKASAEQIEEEVTKLLKLKAQLGQDEGKQKFVLKTPKGTRDYSPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +    +G+Y    K +  L D+  + +             
Sbjct: 81  IRCFKRHGAEVIDTPVFELKETL--TGKYGEDSKLIYNLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS--FDLTPEGSKHSYN 175
                 +   L         K      P     R REF   D                  
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLK 193

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPI---GGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            M      +     L  +  R     +    G    +F  +  + +     S + +   +
Sbjct: 194 IMCEILSSLQIGNFLVKVNDRRILDGMFAVCGVPDSKFRTICSSVDKLDKVSWEEVKNEM 253

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDV-------HNEKLFDSLPENKRVSARGIEVG 285
             E     ++        Q     +    +        N++  + L + K +    I  G
Sbjct: 254 VGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQAVEGLGDLKLLFEYLILFG 313

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE--SSHDGKGIIWPDS 343
                    SL     +      +  +       G   +    I     +DG   ++   
Sbjct: 314 IDDKISFDLSLARGLDYYTGVIYEAVLLQMPTQAGEEPLGVGSIAAGGRYDGLVGMFDPK 373

Query: 344 VAPFKISLINIKAHD-----QVCRDACE------------------------KIYARLSK 374
                   ++I         +   +A E                        K+ + L  
Sbjct: 374 GRKVPCVGLSIGVERIFSIVEQRLEASEEKVRTTETQVLVASAQKKLLEERLKLVSELWD 433

Query: 375 VGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G           ++ +Q    +  G PL  I+G + + D  ++++   +    D+  E+
Sbjct: 434 AGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVASREEVDVRRED 493

Query: 434 VINYASHRFSNNRPV 448
           ++     R   N+P+
Sbjct: 494 LVEEIRRR--TNQPL 506


>gi|307708238|ref|ZP_07644705.1| seryl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307615684|gb|EFN94890.1| seryl-tRNA synthetase [Streptococcus mitis NCTC 12261]
          Length = 424

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDSN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|251770967|gb|EES51552.1| histidyl-tRNA synthetase [Leptospirillum ferrodiazotrophum]
          Length = 431

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/408 (13%), Positives = 105/408 (25%), Gaps = 22/408 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP    +   +   +R     +G  E+ +P  +SA L+  S     D   KEM  
Sbjct: 8   GVKDLLPPESGSFRQLEDEVRRLFALSGFQEVRLPIFESAALFTRSIGESTDIVEKEMYL 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +  + +   P     +      H  +        +     FR E        R R+F
Sbjct: 68  FEGKGGETLALRPEGTASLLRAAIEHRLAEPGRTSRLFYQGPMFRHERPQAG---RLRQF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
               A         +          Y +     G + +           +     +   +
Sbjct: 125 HQAGAEILGPNDPDTDADLIATVSRYAQATGIPGSRLLINSMGCENCRPEYRKRLLSYLE 184

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLN---SIVEQWTAPYAATSDVHNEKLFDSLP 272
            G+  + C                  +             T      S  H E++  +L 
Sbjct: 185 -GQKNLLCETCVRRIATNPLRVLDCKVEGCQAVLDAAPAITDSLCPASRDHFERVRQALS 243

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY------GIGAMRVVA 326
           E        +    +      Y+         A G       G         +G   V  
Sbjct: 244 EGD--IPYTLSHRLVRGL-DYYTETAFEWVSDALGAQSTWAAGGRYNGLVSSLGGPDVPG 300

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAH----DQVCRDACEKIYARLSKVGCDVFWD 382
             +    +   ++   +          +       D   R     + A L + G      
Sbjct: 301 VGLAIGIERLFLLREKAGTLPVSKEPPVMIALHPLDNDSRPYVRTLLAGLREEGISCVGL 360

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
               ++   F  A+  G     + G    SD  + IK   TG+++ + 
Sbjct: 361 FGSNRLKKAFVSAEREGARYIGLAGESERSDGTLTIKDLKTGVQQTLP 408


>gi|74214566|dbj|BAE31128.1| unnamed protein product [Mus musculus]
          Length = 509

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 65/495 (13%), Positives = 132/495 (26%), Gaps = 66/495 (13%)

Query: 11  LQENPRDAEIA----SHKLMLRTGMIHQHSK---------GIYSWLPLGQKALDNVNAII 57
           L+E    AE      +  L L+  +     K         G   + P      + V  +I
Sbjct: 21  LKEQKASAEQIEEEVTKLLKLKAQLGQDEGKQKFVLKTPKGTRDYSPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +    +G+Y    K +  L D+  + +             
Sbjct: 81  IRCFKRHGAEVIDTPVFELKETL--TGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS--FDLTPEGSKHSYN 175
                 +   L         K      P     R REF   D                  
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMVPDAECLK 193

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPI---GGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            M      +     L  +  R     +    G    +F  +  + +     S + +   +
Sbjct: 194 IMCEILSSLQIGNFLVKVNDRRILDGMFAVCGVPDSKFRTICSSVDKLDKVSWEEVKNEM 253

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDV-------HNEKLFDSLPENKRVSARGIEVG 285
             E     ++        Q     +    +        N++  + L + K +    I  G
Sbjct: 254 VGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQAVEGLGDLKLLFEYLILFG 313

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE--SSHDGKGIIWPDS 343
                    SL     +      +  +       G   +    I     +DG   ++   
Sbjct: 314 IDDKISFDLSLARGLDYYTGVIYEAVLLQMPTQAGEEPLGVGSIAAGGRYDGLVGMFDPK 373

Query: 344 VAPFKISLINIKAHD-----QVCRDACE------------------------KIYARLSK 374
                   ++I         +   +A E                        K+ + L  
Sbjct: 374 GRKVPCVGLSIGVERIFSIVEQRLEASEEKVRTTETQVLVASAQKKLLEERLKLVSELWD 433

Query: 375 VGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G           ++ +Q    +  G PL  I+G + + D  ++++   +    D+  E+
Sbjct: 434 AGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVASREEVDVRRED 493

Query: 434 VINYASHRFSNNRPV 448
           ++     R   N+P+
Sbjct: 494 LVEEIRRR--TNQPL 506


>gi|261379853|ref|ZP_05984426.1| histidine--tRNA ligase [Neisseria subflava NJ9703]
 gi|284797549|gb|EFC52896.1| histidine--tRNA ligase [Neisseria subflava NJ9703]
          Length = 431

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/434 (12%), Positives = 113/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVGRWTRAYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEAQLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IR 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMQGKHEQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++  ++ +    
Sbjct: 414 QTVAAADLTDTFQQ 427


>gi|157273383|gb|ABV27282.1| histidyl-tRNA synthetase [Candidatus Chloracidobacterium
           thermophilum]
          Length = 434

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 59/414 (14%), Positives = 123/414 (29%), Gaps = 38/414 (9%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKA-----MI 105
           V  + RE   R G  E+  P  +  +L+V       D   KEM    DR  +      + 
Sbjct: 32  VEDLAREWFRRYGFQEIRTPIFERTELFVRGVGSETDIVTKEMYTWRDRAGEDGEGESLT 91

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P     +   +  H    R      Y I  +FR E   R    R R+F    A     
Sbjct: 92  LRPESTAPVARAYIQHQMWQRAETVRLYYIGPQFRRERGQRG---RFRQFFQIGAEVLGS 148

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG------------------PIGGDLS 207
           +   +     +     + +    G+  + +R  +                   P   +LS
Sbjct: 149 SDHPALD--AEGIELVMGLLTEAGIPKLELRLNTVGNAAGRARFVAVIRETLAPRAHELS 206

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +     +T   ++  SK   D P+ +      D++      E   A + A     +   
Sbjct: 207 EDSRRRLETNPLRILDSKAEQDQPLIATLPPIYDVLD-----EACRAHFDAVRRYLDRAG 261

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
              + + + V         +F      S   +   + A             +G       
Sbjct: 262 IPYVVDARLVRGLDYYTQTVFEV---VSQAPAIGAQNALAGGGRYDGLVETLGGPPTKGF 318

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                 D   +  P+  AP     + +    +   +   +   +  + G    +D     
Sbjct: 319 GFALGLDRVVLAMPEEQAPEPRPELFVIYLGESALEPALEAVRQARRAGVATLFDPSPRS 378

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           + S   +A+  G    +++G   ++  +  ++  +   +  +  E  + Y   +
Sbjct: 379 LKSALRLANKCGARFALLLGEAELASGQWVVRDLMRAEQTTVPAEGWLQYLLAK 432


>gi|325105989|ref|YP_004275643.1| histidyl-tRNA synthetase [Pedobacter saltans DSM 12145]
 gi|324974837|gb|ADY53821.1| histidyl-tRNA synthetase [Pedobacter saltans DSM 12145]
          Length = 459

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 64/460 (13%), Positives = 136/460 (29%), Gaps = 70/460 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   + P+  +  + +   I+    + G  E+  PT+++ D    +G+Y   G +++   
Sbjct: 11  GTRDFGPIETQKRNYIYNTIKSVFRKYGYQEIQTPTMENLDTL--TGKYGEEGDKLIFKI 68

Query: 98  DRNDKAMIYGPTHEEVMTDIFRS------------------------HIKSYRNLPFTFY 133
             +          +    D                              ++    PF  +
Sbjct: 69  LNSGDFYEKASAKKTAEGDFSSKSILPLISEKALRYDLTVPFARFVVMHQNEITFPFKRF 128

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL----------- 182
           QIQ  +R +   +    R REF   D          ++  +  ++   L           
Sbjct: 129 QIQPVWRADRPQKG---RYREFYQCDVDVVGSDSLLNEAEFICIYDEALSKLGLKDFSIK 185

Query: 183 ---------------RIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                          +    + +     + +   + G             + ++      
Sbjct: 186 INNRKILTGIAELIGKPNQIVDMTVAIDKLDKIGLDGVEKELLSKGFTGADLEILKPVIL 245

Query: 228 MDFPIPSENTDF-----DDIISLNSIVEQWTAP-YAATSDVHNEKLFDSLPENKRVSARG 281
           ++     +         D +  L  I E  T   Y A  D+   K+     E     ARG
Sbjct: 246 LNGSNNEKLAQLKMVLKDSLNGLKGIEEIETVFSYLAGFDIKTAKV-----ELDLTLARG 300

Query: 282 I--EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           +    G IF   T      S    G       +       GA     A        +  +
Sbjct: 301 LNYYTGCIFEVKTNEVAMGSIGGGGRYDDLTGMFGLKNLTGAGVSFGADRIYDVLEELNL 360

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +P +       LI +   ++        + A+L  V  +      G ++  Q   A+   
Sbjct: 361 FPKTAEESTKVLICVFGKEEEQ--YAIPLLAKLRSVAINAELYPFGAKLKKQMQYANDKH 418

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            P  +++GS  +   K+  K   +G ++  +++E++   S
Sbjct: 419 IPYTIVIGSDEMQSGKLTFKDMNSGEQKQATIDEIVRSLS 458


>gi|309366994|emb|CAP20463.2| CBR-PARS-2 protein [Caenorhabditis briggsae AF16]
          Length = 265

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 84/240 (35%), Gaps = 27/240 (11%)

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIV-----EQWTAPYAATSDVHNEKLFDSLPENKRV 277
                +D+P+ +++      IS    V     E +            E+           
Sbjct: 6   ICSVQLDYPVQADSGIHGGHISHEYHVRSSLEEDFVDYCTQCGTFSKEETPKMCSRCSAS 65

Query: 278 SAR--GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
             +   +E+ H F+ GTKYS  + A F+G         M  +GIG  R++ A I+     
Sbjct: 66  PQKIASVEIAHTFHLGTKYSEALGAKFQGKP-----FYMCCFGIGVSRLLPATIDLLSVS 120

Query: 336 KGIIWPDSVAPFKISLINIKAH--DQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQF 392
              +          ++I +K      V  +      +R  K G     DD  E   G + 
Sbjct: 121 DKALRLPRAISPFDAVIIVKKSLMSNVIVEMTSSSASRYLKGGI--LLDDRIEMSPGKRI 178

Query: 393 AVADLLGFPLQVIVG---SKFV--SDSKVEI-----KHRLTGIREDMSLEEVINYASHRF 442
             A+ LG P  +++     + +   +  +E+     K      +  M+L+  +++   + 
Sbjct: 179 HEANRLGIPFIIVLANETERSLVTQEPVIEVFTTHPKSADPVDQGSMTLDRFVSFVQSQL 238


>gi|194333565|ref|YP_002015425.1| seryl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
 gi|238693328|sp|B4S6M3|SYS_PROA2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|194311383|gb|ACF45778.1| seryl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
          Length = 431

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 75/221 (33%), Gaps = 16/221 (7%)

Query: 21  ASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQ 75
              +L +    R   I     G   +   G +    +   + ++     G  E+  P   
Sbjct: 147 LGKRLGILDFERGAKI--TGAGFPVYTAKGARLERALINFMLDQHTSVNGYTEVLPPLFV 204

Query: 76  SADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQI 135
           + +    +G++  +  ++  + + N   +   PT E  +T++ R  I    ++P  +   
Sbjct: 205 NRESLRGTGQWPKFADQVYYMNEDN---LYAIPTAEVPLTNMHRDEILDASDIPLAYAAY 261

Query: 136 QLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
              FR E     +   G +R  +F  K       TP  S  +  ++      I   L + 
Sbjct: 262 TPCFRREAGSYGKDTRGFLRVHQFN-KVELVRYATPTTSYDALQEILSHAEGILQALKIP 320

Query: 192 SIPMRAESGPIGGDL-SHEFIVLADTGETQVFCSKDFMDFP 231
              +   SG I  +      I +   GE +   +    +F 
Sbjct: 321 YRVLLLCSGDISANATKCYDIEVWAPGEGKFLEASSCSNFE 361


>gi|328872325|gb|EGG20692.1| histidine-tRNA ligase [Dictyostelium fasciculatum]
          Length = 504

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/444 (11%), Positives = 119/444 (26%), Gaps = 32/444 (7%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
            + +  KG   + P      + +   I+    + GA+ +  P  +  D    +G+Y    
Sbjct: 52  FVLKTPKGTQDYTPPQMAIREELFNNIKSCFKKHGAVTIETPVFELKDTL--TGKYGEDS 109

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           K +  L D+  +                  H              +       + RF   
Sbjct: 110 KLIYDLQDQGGEICSLRYDLTVPFARYVAMHGIRSIKRYHIARVYRRDNPVMTKGRFREF 169

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              +F +   Y   +          ++  S       + L    +      I G  + +F
Sbjct: 170 YQCDFDIAGEYDLMVPDAECVMLMCEILESVKVGNFVIKLNHRKLLDAIFAICGVPADKF 229

Query: 211 I-VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
             + +   +      +      +  +  D +    +   V+    P    + +  EKL D
Sbjct: 230 RTICSAVDKLDKMSWELVRKEMVEEKGLDGEVADRIEKFVKLNGHPRTLMAQIRAEKLCD 289

Query: 270 SLPEN-------------------------KRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
              +                              ARG++      +    +     +   
Sbjct: 290 GHKDAIATLDQLDVLFTYLEAMGCLDRVSFDLSLARGLDYYTGIIYEAIITESDRGSVAA 349

Query: 305 ---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
               DG                +    + S  + +       +   +  +   +    + 
Sbjct: 350 GGRYDGLVGMYGNTEVPSVGFSIGVERLFSILEEEAAKKKIKIRQNQTEVYVCQMDRDIN 409

Query: 362 RDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                KI A L K G +  +      Q   Q   A     P+ V++G   +  + V +K+
Sbjct: 410 ITERLKIIAELWKAGINTEYMYRATPQPKKQIEAASDAQVPVMVLIGKTELETNSVAVKN 469

Query: 421 RLTGIREDMSLEEVINYASHRFSN 444
             T  +E +   +++        +
Sbjct: 470 MATKQQEVVERSQLVAKVQEILKS 493


>gi|256826889|ref|YP_003150848.1| histidyl-tRNA synthetase [Cryptobacterium curtum DSM 15641]
 gi|256583032|gb|ACU94166.1| histidyl-tRNA synthetase [Cryptobacterium curtum DSM 15641]
          Length = 440

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 61/414 (14%), Positives = 115/414 (27%), Gaps = 42/414 (10%)

Query: 59  EEQNRTGAIEMSVPTLQSADLWVE-----------------SGRYDSYGKEMLRLADRND 101
           E   R G + + VPT +  DL+V                  SG  ++    +     + +
Sbjct: 29  EVFGRYGYVPIEVPTFEQTDLFVRGLGTATDVVSKEMFTAISG--ENLKSLLAGETVKPE 86

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
                 P     +      +    + + P         FR E   +    R REF     
Sbjct: 87  SRFSLRPEGTAGVVRAVAQNNLVAQGSAPVKLMYAGPMFRAERPQKG---RLREFHQVGI 143

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-------EFIVL 213
                +            +  +R + R+G+    MR     +G               ++
Sbjct: 144 ECLGASAPSVDAE---GIIMLMRFYERIGIPRENMRLLLNSMGDHTCRPAYREAVRTYIM 200

Query: 214 ADTGETQVFCSKDF-------MDFPIPS-ENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
               E    C +          D   P  +    +  I  + + +   + Y       + 
Sbjct: 201 DHASEMCDECVRRADINPLRSFDCKNPDCQRVMANAPIISDWLCDDCKSHYNQVKAYLDA 260

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
              + + +   V         +F          S +  G  G+   +     G       
Sbjct: 261 AGIEYVEDPSLVRGLDYYTRTVFEIQV-VDGMGSQSAIGGGGRYDGLMEEIGGKSCPGFG 319

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A+              SVA      + I   D   R     +       G  V  D   
Sbjct: 320 FALGFERCVLALTAAGVSVANNPTCTLFIACVDDAARSQGFILAQTCRDAGVAVEIDHQS 379

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             + SQF +AD LG     ++G   V+    +++   +   + +S  EV ++ S
Sbjct: 380 RSLKSQFKLADKLGAVYVAVLGPDEVAAGVAKVRDMASHEEQPVSFAEVAHFVS 433


>gi|251823891|ref|NP_032240.3| histidyl-tRNA synthetase, cytoplasmic [Mus musculus]
 gi|74147283|dbj|BAE27533.1| unnamed protein product [Mus musculus]
 gi|74184854|dbj|BAE39050.1| unnamed protein product [Mus musculus]
 gi|74184967|dbj|BAE39097.1| unnamed protein product [Mus musculus]
          Length = 509

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 65/495 (13%), Positives = 133/495 (26%), Gaps = 66/495 (13%)

Query: 11  LQENPRDAEIA----SHKLMLRTGMIHQHSK---------GIYSWLPLGQKALDNVNAII 57
           L+E    AE      +  L L+  +     K         G   + P      + V  +I
Sbjct: 21  LKEQKASAEQIEEEVTKLLKLKAQLGQDEGKQKFVLKTPKGTRDYSPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +    +G+Y    K +  L D+  + +             
Sbjct: 81  IRCFKRHGAEVIDTPVFELKETL--TGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS--FDLTPEGSKHSYN 175
                 +   L         K      P     R REF   D                  
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLK 193

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPI---GGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            M      +     L  +  R     +    G    +F  +  + +     S + +   +
Sbjct: 194 IMCEILSSLQIGNFLVKVNDRRILDGMFAVCGVPDSKFRTICSSVDKLDKVSWEEVKNEM 253

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDV-------HNEKLFDSLPENKRVSARGIEVG 285
             E     ++        Q     +    +        N++  + L + K +    I  G
Sbjct: 254 VGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQAVEGLGDLKLLFEYLILFG 313

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES--SHDGKGIIWPDS 343
                    SL     +      +  +       G   +    I +   +DG   ++   
Sbjct: 314 IDDKISFDLSLARGLDYYTGVIYEAVLLQMPTQAGEEPLGVGSIAAGGRYDGLVGMFDPK 373

Query: 344 VAPFKISLINIKAHD-----QVCRDACE------------------------KIYARLSK 374
                   ++I         +   +A E                        K+ + L  
Sbjct: 374 GRKVPCVGLSIGVERIFSIVEQRLEASEEKVRTTETQVLVASAQKKLLEERLKLVSELWD 433

Query: 375 VGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G           ++ +Q    +  G PL  I+G + + D  ++++   +    D+  E+
Sbjct: 434 AGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVASREEVDVRRED 493

Query: 434 VINYASHRFSNNRPV 448
           ++     R   N+P+
Sbjct: 494 LVEEIRRR--TNQPL 506


>gi|320450609|ref|YP_004202705.1| histidyl-tRNA synthetase [Thermus scotoductus SA-01]
 gi|320150778|gb|ADW22156.1| histidyl-tRNA synthetase [Thermus scotoductus SA-01]
          Length = 418

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/410 (12%), Positives = 112/410 (27%), Gaps = 18/410 (4%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAM 104
            +   ++ A  R      GA+E+  P  +   ++ +      D   KEM    DR  +++
Sbjct: 14  LRLHQHIVATARRVLEAAGALELITPVFEETQVFEKGVGISTDIVRKEMFTFQDRGGRSL 73

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SF 163
              P     M   +  H       P   +     FR E   +    R R+F   +     
Sbjct: 74  TLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKG---RYRQFHQVNYEALG 130

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLSHEFIVLAD 215
             +P     +   ++ S   +  R         G      R  +        H   +  D
Sbjct: 131 SESPILDAEAVVLLYESLKELGLRRLTVKLSSVGDPKDRARYNAYLREVLSPHREALSQD 190

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNS--IVEQWTAPYAATSDVHNEKLFDSLPE 273
           + E         +D     +     ++        + +    +    + H E+L     E
Sbjct: 191 SQERLELNPMRILDSKSEQDQALLKELNIRPMLDFLGEEAKAHLKAVERHLERLSVPY-E 249

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                 RG++      F   ++   + +  G  G+   +     G     V  A      
Sbjct: 250 LDPTLVRGLDYYVRTAFEVHHAEIGAQSALGGGGRYDGLSELLGGPRVPGVGFAFGVERV 309

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                     +   K   + +    +        +   L        +    ++ G    
Sbjct: 310 ALALEAEGFGLPEEKGPDVYLIPLTEEAVAETFYLAEALRPR-IRAEYALSPKKPGKGVE 368

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            A          +G   +   +V +K   TG +  +   E + +     +
Sbjct: 369 EALKRNAAFVGFLGEDELKTGEVTLKRLATGEQVRLPQTEALGFLLSALA 418


>gi|161511228|ref|NP_840246.2| histidyl-tRNA synthetase [Nitrosomonas europaea ATCC 19718]
 gi|46397795|sp|Q82XU9|SYH_NITEU RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
          Length = 420

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/416 (13%), Positives = 100/416 (24%), Gaps = 23/416 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP            IR      G   +  P ++  DL+V S G   D   KEM  
Sbjct: 10  GMNDILPDESGLWAFFEDTIRTWLAAYGYRNLRTPIVEQTDLFVRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMR 151
             D  +   +                       P   Y     FR E       R     
Sbjct: 70  FVDHLNGENLTLRPEGTASCVRAVIEHNLLYAGPQRLYYSGPMFRHERPQKGRYRQFHQV 129

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
             E L       D           ++            L S   R+           +F 
Sbjct: 130 GVEALGFAGPDIDAELIVMCARLWRLLGISDVRLEISTLGSTESRSVYRARLISYLEKFC 189

Query: 212 VLADTGETQVFCSKDF--MDFPIPSENTDFDDIISLNSIVEQ--WTAPYAATSDVHNE-- 265
              D    +   +     +D   P+          L   +++       A    + N+  
Sbjct: 190 DDLDEDARRRLKTNPLRILDSKNPAMREILAGAPRLFDDLDEDSLAHFEALQRILRNQDI 249

Query: 266 --KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             ++ + L        R +        G + ++     + G   +       + G     
Sbjct: 250 SFEINNRLVRGLDYYNRTVFEWVTDKLGAQGTICAGGRYDGLIAQIGGKPAPACGFAMGI 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
                +   +   G      +              +   +   K+   L   G  V    
Sbjct: 310 ERILALMGENGAVGAHAIPDIYVVHQG--------EAAAEFSWKVAESLRDDGLKVVLHS 361

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYA 438
            G    +Q   AD  G     I+G   V   ++ IK  R    +  + L       
Sbjct: 362 GGGNFKAQMKKADASGARFAAIIGEDEVVAGQISIKPLREAAEQIRVDLAGAAALL 417


>gi|84489457|ref|YP_447689.1| histidyl-tRNA synthetase [Methanosphaera stadtmanae DSM 3091]
 gi|84372776|gb|ABC57046.1| HisS [Methanosphaera stadtmanae DSM 3091]
          Length = 426

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 66/433 (15%), Positives = 127/433 (29%), Gaps = 68/433 (15%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMIYGP 108
            + V   IR      G  E+  P  +  +L+  +SG  +   +E+    D+  + +   P
Sbjct: 20  RNYVENTIRNVVENYGFKEIKTPIFEDLELFTTKSG--EGIKEEIYHFQDKGGRDLALRP 77

Query: 109 THE-EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF---LMKDAYSFD 164
                V      +  KS + L   ++     FR E           +F   ++     ++
Sbjct: 78  ELTASVSRLYNNNLQKSAKPLKMYYFGSC--FRYERPQAGRFREFWQFGIEVIGGVPIYN 135

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
                +  +     V        +G   I     +           I+ +   E      
Sbjct: 136 EAEIIAMANEALTQVGIKNYEINIGHLGIIKGVLNQLNISSQQQTAIIASIDKEDYELLD 195

Query: 225 KDFMDFPIPSE-----------NTDFDDIISLNSIVEQWTAPYAA------TSDVHNEKL 267
           K   D  I SE                D+ +L  ++E     + A      T +V     
Sbjct: 196 KLLEDNDISSEYKNIITSIINIKGSRSDLETLKQLLEDIPESFEALENLDKTLEVLEVFG 255

Query: 268 FDSLPENKRVSARGIEV--GHIFY-----FGTKYSLPMSATF-KGADGKDHYVQMGSYGI 319
           FD    N    ARG++   G +F       G +  +    T+   A      V+   +  
Sbjct: 256 FDDYVVN-LSIARGLDYYTGIVFEIYVPDLGAEKQITGGGTYNLTALFDSEKVESTGFAF 314

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G  R++ A        +  I     +  K+ +I +K      +    ++  +L       
Sbjct: 315 GFDRIMEAY------HRQNIQVPISSKPKVLVIPVKK---EFKLNAIEVAQQLRAHNIVT 365

Query: 380 FWDDM------------GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
             D                                 +++G + V D  V IK   +G +E
Sbjct: 366 DIDLKGKKLKKNLSYANNHNFNK------------VIMIGQQEVEDETVTIKDMDSGCQE 413

Query: 428 DMSLEEVINYASH 440
            +    V++    
Sbjct: 414 TIPQNTVVSELLK 426


>gi|322374872|ref|ZP_08049386.1| serine--tRNA ligase [Streptococcus sp. C300]
 gi|321280372|gb|EFX57411.1| serine--tRNA ligase [Streptococcus sp. C300]
          Length = 424

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|27904761|ref|NP_777887.1| histidyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29611876|sp|P59482|SYH_BUCBP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|27904158|gb|AAO26992.1| histidyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 425

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/427 (12%), Positives = 121/427 (28%), Gaps = 31/427 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G++ ++P        +  I++         E+  P ++   L+  S G   D   KEM  
Sbjct: 10  GMHDYIPDDVITWQYIEYIVKRILKNYCYNEIRFPLIEKTSLFAHSIGNITDIIEKEMYS 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+ +K +   P           +      +    +Y   +   +  RP+ G  R  +F
Sbjct: 70  FKDKKNKKITLRPEGTIGCMRACINKGLLRTSKQKLWYLGPMFRYE--RPQHGRYR--QF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                    ++          +    LR  +      + +   S        H   +L  
Sbjct: 126 HQFGIEVLGMSGPDIDLEIILLVERILRTLNIS--NYVQLELNSIGSYESRLHYKKILFS 183

Query: 216 TGETQVFCSKDFMD-----FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD- 269
             +    C  +         P+   ++   +I ++ +            S +H E L   
Sbjct: 184 YFKQYEACLDEDCKRRLYVNPLRILDSKDKNIKAIINNAPILMDFIDDNSLIHFENLCKL 243

Query: 270 ------------SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                        L        + +        G K ++     +           + + 
Sbjct: 244 MKNIGISYVVNYKLVRGLDYYNKTVFEWKTNLLGAKDAICAGGRYDNLSKSLGVTFIPAI 303

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
           G         ++  S   K                NI+          E +  +  K   
Sbjct: 304 GCAIGMERLVLLIKSLKLKPKTNNAIDVFIIFLKDNIQI---EAIKLSELVRTQFPKKKI 360

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            +       +   QF+ A+ +   + +++G   V ++ + +K   +G ++     ++I  
Sbjct: 361 MLSILSSNLR--KQFSTANKIKARIVLLLGPNEVKNNLILLKDLTSGYQKSFLKNKIIEE 418

Query: 438 ASHRFSN 444
               F N
Sbjct: 419 LELAFKN 425


>gi|47564460|ref|ZP_00235505.1| histidyl-tRNA synthetase [Bacillus cereus G9241]
 gi|47558612|gb|EAL16935.1| histidyl-tRNA synthetase [Bacillus cereus G9241]
          Length = 425

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/429 (13%), Positives = 131/429 (30%), Gaps = 45/429 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++       F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEAELMCMAFELFQTLNLEVTIQYNNRKLLNGILQAINIPTELTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPY---AATSD 261
            D  E          V       +      NT    +  S++   + ++ P         
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLSIDDFKDAFSTPLVTDGVNEL 245

Query: 262 VHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++   +L  N+         RG+ +     +          +  G+ G+   +    
Sbjct: 246 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDDSITSSIGSGGRYDNIIGAF 305

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-- 374
            G         +          +           +  I    ++    C +I  +L    
Sbjct: 306 RGDNMNYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGTELQ---CLQIAQQLRSTT 362

Query: 375 -VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +  ++         G +   A    +    P  +I+G + +S   V +++   G    +
Sbjct: 363 SLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTDTVVLRNMKEGSEVKV 416

Query: 430 SLEEVINYA 438
            +  + NY 
Sbjct: 417 PISSINNYL 425


>gi|71908597|ref|YP_286184.1| histidyl-tRNA synthetase [Dechloromonas aromatica RCB]
 gi|83305866|sp|Q47BR7|SYH_DECAR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|71848218|gb|AAZ47714.1| histidyl-tRNA synthetase [Dechloromonas aromatica RCB]
          Length = 429

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/424 (12%), Positives = 107/424 (25%), Gaps = 30/424 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP   +  +     IR      G   + +P ++   L+  + G   D   KEM  
Sbjct: 10  GMNDVLPDEAEFWELFEDTIRSWLKGYGYRPIRMPIVEPTPLFKRAIGEVTDIVEKEMYS 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  +   +                           Y I   FR E   +    R R+F
Sbjct: 70  FVDGLNGEALTLRPEGTAGCVRAVIEHNLAARQTQRLYYIGQMFRHERPQKG---RYRQF 126

Query: 156 LMKDAYSFDLTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
                 SF +           M                 + LG         +  I    
Sbjct: 127 HQVGVESFGMAGPDIDAEMILMGARLWADLGLDGIELQLNSLGQPEERALHRAALITYFE 186

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL--NSIVEQWTAPYAATSDVHN 264
            +  ++  D            +D   P+          L      E           + +
Sbjct: 187 ENAELLDEDAKRRLHTNPLRILDTKNPAMQELCAAAPKLIDYLGAESLAHFEGVQRVLRD 246

Query: 265 E----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 +   L          +        G + ++     + G    +      +   G
Sbjct: 247 AGVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVCAGGRYDGL--VEQLGGKPTPACG 304

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
               V  +I    +  G     +   + +         +       ++   L   G +V 
Sbjct: 305 FAMGVERLIALIRESGGEPAAPAPDVYLVHQG------EAAARQAFRVAEGLRDQGINVL 358

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGI-REDMSLEEVINYA 438
               G    SQ   AD  G    VI+G    +  + ++K  R  G  +  + ++++    
Sbjct: 359 QHCGGGSFKSQMKKADGSGATFAVIIGDDEAATGEAQLKSLRAEGSAQLKLKVDDLAEAI 418

Query: 439 SHRF 442
             + 
Sbjct: 419 IGQL 422


>gi|300777749|ref|ZP_07087607.1| histidine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
 gi|300503259|gb|EFK34399.1| histidine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
          Length = 476

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 6/166 (3%)

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
             V    +  G  +Y G  + +       G+ G        +   G   +    I    D
Sbjct: 310 NLVFNITLARGLDYYTGAIFEVKADEVAMGSIGGGGRYDNLTEVFGVKNIPGIGISFGLD 369

Query: 335 GKGIIW-----PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
              ++          A  KI  +          +   K+  +L   G          +I 
Sbjct: 370 RIYLVMEELNLFPEEASAKIEYLFANFGGDGVTE-ALKLMMQLRAKGISAELYPENAKIN 428

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
            QF  A+  G    V +G + + ++ V  K    G+++ +SLEE +
Sbjct: 429 KQFTYAEKKGIKNLVFLGEEEIKNNTVTFKDLEAGVQKTVSLEEFL 474


>gi|308464759|ref|XP_003094644.1| hypothetical protein CRE_31457 [Caenorhabditis remanei]
 gi|308247111|gb|EFO91063.1| hypothetical protein CRE_31457 [Caenorhabditis remanei]
          Length = 868

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 8/140 (5%)

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH------DQVCRDACEKIY 369
               G  R++ A++E S   +      +   FK  +  IK        ++      E + 
Sbjct: 713 QSSYGIGRIMYALLEHSFRQREGDEQRTFLAFKPLVAPIKCSILPISANETLVPVMEAVK 772

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIRE 427
             L+        DD    IG ++A  D +G P  + V           V I+H  T  + 
Sbjct: 773 EELALYELSYKVDDSSGTIGRRYARTDEIGIPFGITVDFDSDKTTPHTVTIRHVETMSQI 832

Query: 428 DMSLEEVINYASHRFSNNRP 447
            + + E+    S   +  + 
Sbjct: 833 RLPISELGRLISDLVAGRQQ 852



 Score = 46.3 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 15/109 (13%)

Query: 9   PILQE-----NPRDA---EIASHKLMLRTGMIHQH------SKGIYSWLPLGQKALDNVN 54
             L+E      P++A    +    L+ R     Q         G+Y + P+G     N+ 
Sbjct: 244 RRLEETEIALAPKEASFDRLKLEDLLKRRFFYDQSFAVYGGVAGLYDFGPMGCSLKANML 303

Query: 55  AIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
              R+      G +E+   +L    +   SG  D +   M++     + 
Sbjct: 304 QKWRKHFILEEGMLEVDCTSLTPESVQKASGHVDRFADWMVKDVKNGEC 352


>gi|194336041|ref|YP_002017835.1| seryl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
 gi|238693405|sp|B4SF71|SYS_PELPB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|194308518|gb|ACF43218.1| seryl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 431

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 74/213 (34%), Gaps = 13/213 (6%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
             G   ++  G +    +   + +    R G  E+  P   + +    +G++  +  ++ 
Sbjct: 164 GAGFPVYIGKGARLERALINFMLDCHTERHGYTEVFPPFFVNQESLRGTGQWPKFADQVY 223

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
                 +  +   PT E  +T++ R  +   + LP ++      FR E     +   G +
Sbjct: 224 ---HMEEDDLYAIPTAEVPITNLHRGEMLDTKTLPISYAAYSACFRREAGSYGKDTRGFL 280

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   +   F   PE S  +   +  +   I   L +    +   SG I  + +   
Sbjct: 281 RVHQFNKVEMVKF-TRPEESYEALETIRENAEAILTALKIPYRVLLLCSGDISANATKCY 339

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             E    A+    +     +F D+     N  F
Sbjct: 340 DIEVWSPAEQKYLEASSCSNFEDYQARRANIRF 372


>gi|194365530|ref|YP_002028140.1| histidyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
 gi|229558744|sp|B4STN3|SYH_STRM5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|194348334|gb|ACF51457.1| histidyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
          Length = 465

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 80/475 (16%), Positives = 137/475 (28%), Gaps = 72/475 (15%)

Query: 31  MIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDS 88
           MI  +   G    LP  Q A   +  +IR    R G + +  P  + +D L  +SG    
Sbjct: 1   MIKPRTPPGTLELLPREQIAFQRMLDVIRRNYERFGFLPVETPVFELSDVLLTKSGGETE 60

Query: 89  YGKEMLRLA----------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                ++            DR+   M         +        +     PF  YQ+Q  
Sbjct: 61  RQVYFVQSTGALANAAESGDRSLPEMALRFDLTVPLARYVA-EHEHELTFPFRRYQMQRV 119

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           +R E   R    R REF   D           +    ++      +F  L +    ++  
Sbjct: 120 YRGERAQRG---RFREFYQCDIDVIGKDSLSVR-YDAEVLAVIHAVFSELRIGDFSIQLN 175

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS-----ENTDFDDIISLNSIVEQWT 253
           +  +      E + +A+ GE Q+   ++             E    +        VE+  
Sbjct: 176 NRNLLR-GYFESLGVAE-GERQLAVLREVDKLDKRGADYVRETLVGEGFGIPAEQVEKIL 233

Query: 254 APYAATSDVHNEKLFD-------------------------------SLPENKRVSARGI 282
           A  A  S  H++ L                                  +PE        I
Sbjct: 234 AFVAVRSKGHDDALAQLAALEAAAESSETLRAGVAELREVLQLVQALGVPETAYCLNFSI 293

Query: 283 EVGHIFYFGTKY-----------SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
             G  +Y GT Y           S+     ++         ++   GI            
Sbjct: 294 ARGLDYYTGTVYETTLTDHPQIGSICSGGRYEDLASHYSKSKLPGVGISIGLSRLFWQLR 353

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                  I   SV      +      D+        I  RL   G +       ++IG Q
Sbjct: 354 EAGLIDGIEASSVQALVALM------DEQGMPQSLDIARRLRAGGINTEVQMEPKKIGKQ 407

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           F  A   G    V+ G   ++   V +K  L   + ++S +E+ +        +R
Sbjct: 408 FQYAAKAGIRFVVLAGEDELARGVVAVKDLLREQQFEVSRDELASTLLVELEQSR 462


>gi|218898400|ref|YP_002446811.1| histidyl-tRNA synthetase [Bacillus cereus G9842]
 gi|218542658|gb|ACK95052.1| histidyl-tRNA synthetase [Bacillus cereus G9842]
          Length = 425

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 67/423 (15%), Positives = 134/423 (31%), Gaps = 33/423 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  P L   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRTCEDTFERYGCKPLETPMLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFRTLNLEITIQYNNRKLLNGILQAINIPTELTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT    +  S++   + +  P  A      
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISKEMADTICNTVLSCLKLSIDDFKDAFNTPIVADGVNEL 245

Query: 265 EKLFDSLP----ENKRVSARGIEVGHIFYFGTKYS---LPMSATFKGADGKDHYVQMGSY 317
           ++L   L         +    +  G   Y GT Y       S T     G  +   +G++
Sbjct: 246 QQLQQYLIALGINENAIFNPFLARGLTMYTGTIYEIFLKDGSITSSIGSGGRYDNIIGAF 305

Query: 318 GIGAMRVVAAVIESSHD-GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV- 375
               +      I    D     +           +  I    ++    C +I  +L    
Sbjct: 306 RGDNISYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGTELQ---CLQIAQQLRSTT 362

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V  +  G ++      A+    P  +I+G + +S   V +++   G    + L  + 
Sbjct: 363 SLKVELELAGRKLKRALNYANKENIPYVLIIGEEELSTETVMLRNMKEGSEVKVPLSSLS 422

Query: 436 NYA 438
           +Y 
Sbjct: 423 SYL 425


>gi|322377063|ref|ZP_08051555.1| serine--tRNA ligase [Streptococcus sp. M334]
 gi|321281776|gb|EFX58784.1| serine--tRNA ligase [Streptococcus sp. M334]
          Length = 424

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERALYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDSN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|306821792|ref|ZP_07455387.1| histidine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550159|gb|EFM38155.1| histidine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 426

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/406 (13%), Positives = 112/406 (27%), Gaps = 23/406 (5%)

Query: 56  IIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRND---KAMIYGPTH 110
           + +E        E   PT +   L+        D   KEM     R D    ++   P  
Sbjct: 27  VFKEVCKVFDYKEYETPTFEYTSLFTRGIGDTTDIVNKEMFTFVPRGDSQKDSITLKPEG 86

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +  ++  H    +  P   + I   FR+E   +    R +EF              +
Sbjct: 87  TASIVRLYNQHNLQSKKPPLKLFYITPCFRNERNQKG---RFKEFHQFGTEILGSDAAST 143

Query: 171 KHSYN----KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                    + F     + +     +     ES     +   +F+   D       C + 
Sbjct: 144 DAEIITLAYRFFERLGIMDNITLEINSVGGFESRKAYNEKLRDFLKE-DYDNLCETCKER 202

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV------SAR 280
           +   P+   +   +    +           +     H EK+   L              R
Sbjct: 203 YDKNPMRIIDCKEESCNKITKDAPLMIDNISQEEKEHFEKVKRLLDAADVKYVVNPNIVR 262

Query: 281 GIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           G++      F F + +++   AT  G  G+   +     G     V   +          
Sbjct: 263 GLDYYTKTAFEFVS-HNIGSQATVCG-GGRYDGLVKELGGADISGVGFGLGIERLIMTLD 320

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                        + I +  +       +I   L K G     D + + + +Q   AD  
Sbjct: 321 ELGKMPEFKVEYDLYIASLGEEADVKSFEIVDNLRKKGIVCDKDHVQKSLKAQMKYADDK 380

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
                +++G   +   K  +K   +  + ++ L+            
Sbjct: 381 NAHYTLMLGENELESGKAILKDMTSSTQTEVKLDNFEEEFLKILKK 426


>gi|57233674|ref|YP_180761.1| histidyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
 gi|83305867|sp|Q3ZAI8|SYH_DEHE1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|57224122|gb|AAW39179.1| histidyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
          Length = 418

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/399 (13%), Positives = 115/399 (28%), Gaps = 13/399 (3%)

Query: 56  IIREEQNRT----GAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPT 109
            +R++  R     G      P  + A L+V S     D   KEM    DR    +   P 
Sbjct: 21  FVRQQAARIAALYGYQRTDTPVFEDAGLFVRSVGEGTDIVSKEMYTFEDRGGDKLTLRPE 80

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
               +   +  H    R  P   Y +   FR +        +  +F  +     D + + 
Sbjct: 81  GTAPICRAYLEHGMQTRTKPVKLYYLSSIFRYDRPQAGRYRQHHQFGFEAIGEADASLDA 140

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                   F + L I       +     E  P        +    + G+    C      
Sbjct: 141 EVIEMAWRFYNLLGINDLSLELNSIGCRECRPAYISALKAYYGQHE-GKLCSDCKTRLDK 199

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSARGIE 283
             +   +   ++   +     +           H  +L + L              RG++
Sbjct: 200 NTLRLLDCKREECQCVAENAPRSADYLCPDCLAHYNRLKECLTVVDLPFHENFRLVRGLD 259

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                 F  +  +  + +  G  G+   +     G     +  A               +
Sbjct: 260 YYSRTVFEIQPRIEGAQSTIGGGGRYDGLIEQLGGEPTPAIGFATGIERIILNLKRQGIT 319

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
             P     + +    +    A   + + L K G  ++     + I +Q   A+ LG    
Sbjct: 320 PPPLPSPSVFLAYMGEAASLASIALASDLRKAGIGIYQTYAQKSIKAQLRQANSLGADWA 379

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           VI+G + +      +++     +  + L+++I     + 
Sbjct: 380 VILGEEELKQGCAVLRNMKEAGQATIPLDQLICEIKKQI 418


>gi|296113389|ref|YP_003627327.1| histidyl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|295921083|gb|ADG61434.1| histidyl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|326559872|gb|EGE10272.1| histidyl-tRNA synthetase [Moraxella catarrhalis 7169]
 gi|326560779|gb|EGE11146.1| histidyl-tRNA synthetase [Moraxella catarrhalis 103P14B1]
 gi|326569642|gb|EGE19694.1| histidyl-tRNA synthetase [Moraxella catarrhalis BC1]
 gi|326570123|gb|EGE20168.1| histidyl-tRNA synthetase [Moraxella catarrhalis BC8]
 gi|326570861|gb|EGE20885.1| histidyl-tRNA synthetase [Moraxella catarrhalis BC7]
 gi|326574411|gb|EGE24353.1| histidyl-tRNA synthetase [Moraxella catarrhalis 101P30B1]
 gi|326575996|gb|EGE25919.1| histidyl-tRNA synthetase [Moraxella catarrhalis CO72]
 gi|326576408|gb|EGE26317.1| histidyl-tRNA synthetase [Moraxella catarrhalis O35E]
          Length = 422

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/419 (13%), Positives = 110/419 (26%), Gaps = 44/419 (10%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR----- 95
           LP    A   +   + E  +  G  ++ +P ++   L+        D   KEM       
Sbjct: 14  LPEQTPAWRAMERTLIEVMDSYGYSQIRLPLVEETQLFARGVGEATDIVEKEMFGVVHGG 73

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                  +    P            H  +  + P  +Y     FR E   +    R R+F
Sbjct: 74  NKGDEGSSFTLRPEGTAGCVRAIVEHNLTRGDTPKLWYL-GPMFRYERPQKG---RYRQF 129

Query: 156 LMKDAYSFDLTPEGSKH----SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                  F      +          M+       H     +     +          E++
Sbjct: 130 HQLGVEYFGAELPDADAELIAMTYHMWQKLGIGEHVTLQLNTLGETDERVAYKSALVEYL 189

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL---- 267
                        +     P+   ++  ++   +     +        S  H EK+    
Sbjct: 190 TTHQEALDDD-SKRRLNTNPLRILDSKDENTQQILKNAPKLGEFLGEASLAHFEKVQNYL 248

Query: 268 ---------FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-----DHYVQ 313
                     D L        + +        G++ ++     + G  G      +    
Sbjct: 249 SALGISFEINDKLVRGLDYYNKTVFEWVTDKLGSQATVCGGGRYDGLVGIIKGNAEQSEP 308

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
              + +G  R++  +   +           V       I             E +  RL 
Sbjct: 309 AVGFAMGLERLMLLIDAVNPYQVASWCDVFVIAHPDYYI-------DGLKYAESL--RLR 359

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +    V        + SQ   AD  G    VI+    V+ +++ IK   TG +    ++
Sbjct: 360 QDNLRVKM-ASATGLKSQMKKADKSGAAYTVIIAEDEVNANQITIKTMATGEQRRAPID 417


>gi|289431961|ref|YP_003461834.1| histidyl-tRNA synthetase [Dehalococcoides sp. GT]
 gi|288945681|gb|ADC73378.1| histidyl-tRNA synthetase [Dehalococcoides sp. GT]
          Length = 418

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/399 (13%), Positives = 116/399 (29%), Gaps = 13/399 (3%)

Query: 56  IIREEQNRT----GAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPT 109
            +R++  R     G      P  + A L+V S     D   KEM    DR    +   P 
Sbjct: 21  FVRQQAARIAALYGYQRTDTPVFEDAGLFVRSVGEGTDIVSKEMYTFEDRGGDKLTLRPE 80

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
               +   +  H    R  P   Y +   FR +        +  +F  +     D + + 
Sbjct: 81  GTAPVCRAYLEHGMQTRTKPVKLYYLSSIFRYDRPQAGRYRQHHQFGFEAIGEADASLDA 140

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                   F + L I       +     +  P       ++      G+    C+     
Sbjct: 141 EIIEMAWSFYNLLGITDLSLELNSIGCRQCRPNYISALKDYYQQH-AGKLCPDCNTRLDK 199

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSARGIE 283
             +   +    +  ++     +           H  +L + L              RG++
Sbjct: 200 NTLRLLDCKRAECQAVAGNAPRSADYLCPDCLAHYSRLKECLTILDLPFHENFRLVRGLD 259

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                 F  +     + +  G  G+   +     G     +  A                
Sbjct: 260 YYSRTVFEIQPMAEGAQSTIGGGGRYDGLIEQLGGEATPAMGFATGIERIILNLKRQGIV 319

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
            +P     + +    +    A   + + L K G  ++     + I +Q   A+ LG    
Sbjct: 320 PSPLPSPAVFLAYMGETAALASFALASDLRKAGIGIYQTYAQKSIKAQLRQANSLGVDWV 379

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           VI+G + +      +++     + ++ L+++I     + 
Sbjct: 380 VILGEEELKQGCAVLRNMKEAGQANIPLDQLICEIKKQI 418


>gi|189347312|ref|YP_001943841.1| seryl-tRNA synthetase [Chlorobium limicola DSM 245]
 gi|238692177|sp|B3EF00|SYS_CHLL2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|189341459|gb|ACD90862.1| seryl-tRNA synthetase [Chlorobium limicola DSM 245]
          Length = 427

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 73/213 (34%), Gaps = 13/213 (6%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
             G   +   G +   ++   + +      G  E+  P L + +    +G++  +  ++ 
Sbjct: 164 GAGFPVYTGKGARLERSLINFMLDTHTSGHGYTEIFPPFLVNRESLRGTGQWPKFADQVY 223

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            + +     +   PT E  +T++ R  +    +LP  +      FR E     +   G +
Sbjct: 224 TIEEDG---LYAIPTAEVPVTNLHRGEMLDAADLPIAYAAYSACFRREAGSYGKDTRGFL 280

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   +       PE S  +  ++      I   L +    +   SG I  + +   
Sbjct: 281 RVHQFNKVEMV-RFTRPEVSYEALEEIRQHAEAILLALKIPYRVLLLCSGDISANATKCY 339

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             E    A+    +     +F D+     N  +
Sbjct: 340 DIEVWSPAEDKYLEASSCSNFEDYQARRMNIRY 372


>gi|325280514|ref|YP_004253056.1| Histidyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
 gi|324312323|gb|ADY32876.1| Histidyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
          Length = 454

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 46/112 (41%), Gaps = 3/112 (2%)

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
            I    +   +   D++   +I  +N    ++     C  +  +L + G +        +
Sbjct: 345 RIFDVMNQLDLFPKDNMTTTQILFVNFGKQEER---YCLPLLKQLREAGINAEIYPEAAK 401

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +  Q   AD    P   ++G   + +  + +K+ L+G + ++++EE++    
Sbjct: 402 MKKQMTYADKKEIPFVALIGENEMQEGIISLKNMLSGEQHNVTMEELVERLK 453


>gi|18044873|gb|AAH20088.1| Hars protein [Mus musculus]
          Length = 509

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 65/495 (13%), Positives = 133/495 (26%), Gaps = 66/495 (13%)

Query: 11  LQENPRDAEIA----SHKLMLRTGMIHQHSK---------GIYSWLPLGQKALDNVNAII 57
           L+E    AE      +  L L+  +     K         G   + P      + V  +I
Sbjct: 21  LKEQKASAEQIEEEVTKLLKLKAQLGQDEGKQKFVLKTPKGTRDYSPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +    +G+Y    K +  L D+  + +             
Sbjct: 81  IRCFKRHGAEVIDTPVFELKETL--TGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS--FDLTPEGSKHSYN 175
                 +   L         K      P     R REF   D                  
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLK 193

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPI---GGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            M      +     L  +  R     +    G    +F  +  + +     S + +   +
Sbjct: 194 IMCEILSSLQIGNFLVKVNDRRILDGMFAVCGVPDSKFRTICSSVDKLDKVSWEEVKNEM 253

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDV-------HNEKLFDSLPENKRVSARGIEVG 285
             E     ++        Q     +    +        N++  + L + K +    I  G
Sbjct: 254 VGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLILFG 313

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES--SHDGKGIIWPDS 343
                    SL     +      +  +       G   +    I +   +DG   ++   
Sbjct: 314 IDDKISFDLSLARGLDYYTGVIYEAVLLQMPTQAGEEPLGVGSIAAGGRYDGLVGMFDPK 373

Query: 344 VAPFKISLINIKAHD-----QVCRDACE------------------------KIYARLSK 374
                   ++I         +   +A E                        K+ + L  
Sbjct: 374 GRKVPCVGLSIGVERIFSIVEQRLEASEEKVRTTETQVLVASAQKKLLEERLKLVSELWD 433

Query: 375 VGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G           ++ +Q    +  G PL  I+G + + D  ++++   +    D+  E+
Sbjct: 434 AGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVASREEVDVRRED 493

Query: 434 VINYASHRFSNNRPV 448
           ++     R   N+P+
Sbjct: 494 LVEEIRRR--TNQPL 506


>gi|224000828|ref|XP_002290086.1| histidyl-trna synthetase [Thalassiosira pseudonana CCMP1335]
 gi|220973508|gb|EED91838.1| histidyl-trna synthetase [Thalassiosira pseudonana CCMP1335]
          Length = 508

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/425 (12%), Positives = 125/425 (29%), Gaps = 28/425 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   + P   +    + +  R   +  G  E   P L+S  L+      +   +++    
Sbjct: 86  GTRDFYPPDMRLRTWLFSQWRIVASLYGFSEYDAPVLESESLYTRK-AGEEVTQQLYNFV 144

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D+ D+ +   P     +  +  +  K    LP  ++ I   +R E   R    R RE   
Sbjct: 145 DKGDRNVALRPEMTPSLARMVMAK-KGGLPLPLKWFSIPQCWRYERMTRG---RRREHYQ 200

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            +   + +    ++       V + +    L  + + ++  S  + G++  E  V  +  
Sbjct: 201 WNMDIWGVDGIEAEAELLSAMVMFFKRVG-LTSEDVGIKVNSRGVIGEVLKELGVPEEKF 259

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA--------------PYAATSDVH 263
                        P+ +   + +++    S +E+ T+              P  + +   
Sbjct: 260 AATCVLVDKLEKVPLDAIQGELEELGLEKSTIEKLTSVLTNTSIESISAVLPPGSDAVKQ 319

Query: 264 NEKLFDSLPENKRVSARGIE----VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
             +LF              +     G  +Y G  +          A              
Sbjct: 320 LSQLFKLCEAYGIADWILFDASVVRGLAYYTGIVFEAFDRKGVLRAIAGGGRYDKLLETF 379

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKI----SLINIKAHDQVCRDACEKIYARLSKV 375
           G     AA           +  +               + A  +       ++ + L + 
Sbjct: 380 GGEPTPAAGFGFGDAVIVELLKERDVLPSFEGSGFDTVVFAMSEDLFGVAVQVASTLRQN 439

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V      ++    F  A        VIV      + +V +K    G +  + ++ + 
Sbjct: 440 GQSVDLILENKKPKWVFKHASRNEAKYCVIVAGDEYKNGEVSVKDLALGEQMSVKIDALD 499

Query: 436 NYASH 440
           ++A  
Sbjct: 500 SWAKE 504


>gi|222110304|ref|YP_002552568.1| histidyl-tRNA synthetase [Acidovorax ebreus TPSY]
 gi|254782328|sp|B9MFX7|SYH_DIAST RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|221729748|gb|ACM32568.1| histidyl-tRNA synthetase [Acidovorax ebreus TPSY]
          Length = 429

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 67/430 (15%), Positives = 125/430 (29%), Gaps = 31/430 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      + +   +R    R     +  P ++   L+V   G   D   KEM  
Sbjct: 9   GMNDILPPDSARWEWLEDKVRTLMARYAYRNIRTPIVEPTPLFVRGLGEVTDIVEKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +   +                     +     Y +   FR E   R    R R+F
Sbjct: 69  FEDRLNGEQLTLRPEATAGVVRAVVEHSMLYDGGKRLYYMGPMFRHERPQRG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
               A +       +        +    ++  LGL+++ +   S     +       L  
Sbjct: 126 HQIGAEALGFPGAEADAEI---ILLAHALWAELGLENVRLELNSLGQPDERRAHRAALIA 182

Query: 216 TGETQVF-----CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             E  +        +     P+   +T    + +L     +        S  H E +   
Sbjct: 183 YLEQHMDVLDEDARRRLHSNPLRILDTKNPAMQALVEGAPRLIDFLGEASLQHFETVKAI 242

Query: 271 LPENKRVS------ARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           L  N           RG++     +F F T     + +      G  +   +   G    
Sbjct: 243 LDANGVAWSLNPRLVRGMDYYNLTVFEFVTDQ---LGSQGTICGGGRYDYLIEQIGGKFA 299

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
             V   +      + +   ++      +       D            RL   G  V   
Sbjct: 300 PAVGWALGVERVLELLKEQETQVARPAADAYAVVPDASALPVVMAALQRLRAQGVSVQMH 359

Query: 383 D---MGEQIGSQ---FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVI 435
                GE +GS    F  AD  G    ++ G+  ++   V +K  R +G + +  L  + 
Sbjct: 360 SPTAAGEGMGSMKSQFKKADASGARYALVFGADELARGAVTVKPLRDSGEQAERPLAALA 419

Query: 436 NYASHRFSNN 445
            +A+   S+ 
Sbjct: 420 EWAATLQSSR 429


>gi|159027764|emb|CAO89634.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 427

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 71/207 (34%), Gaps = 12/207 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG      +   + +     G  E+  P L ++D    +G+   + +E  +  D     +
Sbjct: 174 LGAALERALINFMLDRHIVAGYTEVLPPILINSDSLRGTGQLPKFAEESFKCRD---DEL 230

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+++R  I S   LP         FR E     +   G++R  +F   + 
Sbjct: 231 WLAPTAEVPVTNLYRDEILSSEQLPIKHCAYTPCFRREAGSYGKDTRGLIRLHQFNKVEM 290

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
                    ++     +  +   I   L L    +   +G +G   +     E  + +  
Sbjct: 291 VKIVHPDASAQEH-ESLVANAEAILQALQLPYRVIELCTGDLGFSAAKCYDLEVWLPSAN 349

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDII 243
              ++    +F DF     N  F +  
Sbjct: 350 TYREISSCSNFRDFQARRANIRFKEKG 376


>gi|325181060|emb|CCA15469.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 443

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/407 (13%), Positives = 116/407 (28%), Gaps = 23/407 (5%)

Query: 53  VNAIIREEQN----RTGAIEMSVPTLQSADLWVESGRYDS--YGKEMLRLADRNDKAMIY 106
           +   + +       R G  +M  P L+  +L++ S   DS    KEM    D++  ++  
Sbjct: 38  IQEFVSQTFQSIVTRYGFQKMQTPVLEYTNLYMRSLGADSDIVNKEMYTFQDKSGDSVSL 97

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
            P     +    +        LP   +     +R E   R    R REF           
Sbjct: 98  RPEGTASVIRALKDGNL-VSKLPRKVFYDGKMYRYERPQRG---RFREFQQFGVEYVGCR 153

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                     M    LR         + +             E +    +   ++  S+ 
Sbjct: 154 SPSVDVEVIVMADRCLRALDVRERTELHINTLGDAESRIRYKEALREYFSTRIRLLSSES 213

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
            + F   +     D     +  + Q    +         + F+ +    +          
Sbjct: 214 QLRFERGNLLRILDSKNDQDQDLIQCAPSFGQYLSCVASERFEGVQSGLQELGIDFVHNT 273

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQM----------GSYGIGAMRVVAAVIESSHDGK 336
               G  Y       F   D   H                   G+  +            
Sbjct: 274 RLVRGLDYYCDTVFEFVEDDPSSHVKMALLAGGCYENLMESVGGSKLICIGWAAGIDRLC 333

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            +      +P  + +I + +  +       +I  +L + G  V       Q+  Q   AD
Sbjct: 334 LLNKLRPSSPTSLFIIPLPSTTRNLFPKAFEIAEKLRETGLIVHLSHGKGQLKKQIKTAD 393

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS---LEEVINYASH 440
            L     + +G +    ++V +K+  +G ++ ++   L++V +  + 
Sbjct: 394 RLECDYTIFLGDQEFEAAQVRVKNMQSGEQQTIAWSQLDQVYSQLAQ 440


>gi|315636924|ref|ZP_07892148.1| histidine--tRNA ligase [Arcobacter butzleri JV22]
 gi|315478754|gb|EFU69463.1| histidine--tRNA ligase [Arcobacter butzleri JV22]
          Length = 413

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/381 (14%), Positives = 115/381 (30%), Gaps = 16/381 (4%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
              G   +  P L+   L+  S     D   KEM +  D+ +  +   P     +   F 
Sbjct: 41  KNYGFSYLETPLLEETALFKRSVGESSDIVNKEMYQFIDKGENDVCLRPEGTAGVVRHFV 100

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
                     + +Y     FR E   +    R REF       F +       +   M  
Sbjct: 101 EKKLDRAGGNYKWYYYGPMFRYERPQKG---RLREFHQFGCEVFGIDSVYEDANIIIMIK 157

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEF-IVLADTGETQVFCSKDFMDFPIPSENTD 238
             L  F    +  +        +     +    + +   E    C++  +  PI   +  
Sbjct: 158 EILDFFGIGFILKLNSLGCKECMPPYKQNLVKHLTSFKDELCEDCNRRILTNPIRVLDCK 217

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +   SL     + T     + +   EKL + L  +    +  I+   +      Y+   
Sbjct: 218 NEKCQSLLVNAPKITNSLCNSCNDDFEKLKEIL--DFNNISYEIDSNLVRGL-DYYNKTA 274

Query: 299 SATFKGADGKDHYVQMGSY----GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                   G    +  G               A I  +   + ++    +   +  ++ +
Sbjct: 275 FEFVSNEIGAQSAIAGGGRYDRLVEFLGGKSTAGIGFAIGIERLLELIKMPKVEEDIVYL 334

Query: 355 KAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
            A D+   +    I   + K        +      G  F +A+ LG  +  ++G   ++ 
Sbjct: 335 GALDEKSLNTV--IKTAIKKRKTTKTLVEYAPRSFGKHFGIAEKLGANIVALIGENELNS 392

Query: 414 SKVEIKHRLTGIREDMSLEEV 434
             + IK+  T  + +  LEE 
Sbjct: 393 GTIYIKNIKTQEQINKKLEEF 413


>gi|150010350|ref|YP_001305093.1| histidyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|166228590|sp|A6LIF7|SYH_PARD8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|149938774|gb|ABR45471.1| histidyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
          Length = 451

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 66/451 (14%), Positives = 137/451 (30%), Gaps = 62/451 (13%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSAD-------------LWVE 82
           P G +          + +   IRE  +  G  ++  P +++               L+  
Sbjct: 7   PKGTRDFSPEEMAKRNYIFNTIREVFHLYGFQQIETPAMENLSTLMGKYGEEGDKLLFKI 66

Query: 83  SGRYDSYGK-EMLRLADRNDKAMIYGPTHEEVMTDI------FRSHIKSYRNLPFTFYQI 135
               D +       L ++N          + +  D+      +    ++  + PF  YQI
Sbjct: 67  LNSGDCFAGISDEELMEKNPLRFAAKACEKGLRYDLTVPFARYVVQHRNEISFPFKRYQI 126

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIP 194
           Q  +R +   +    R REF   D          ++      M   + R   R+ +K   
Sbjct: 127 QPVWRADRPQKG---RYREFYQCDGDVVGSDSLINEVELIQIMDEVFHRFGIRVCIKMNN 183

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQV-----------FCSKDFMDFPIPSENTDFDDII 243
            +  SG        + IV       ++             SK   +  I           
Sbjct: 184 RKILSGIAEIIGEADKIVDITVAIDKLDKIGLDNVNEELRSKGLPEEAIERLQPIIMLQG 243

Query: 244 SLNSIVEQWTAPYAATS---------DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY 294
           S    +       +A+          D   E++  +    +      +  G  +Y G  +
Sbjct: 244 SNQEKIATLKKVLSASETGLKGVAELDFILERISHTSIRAELELDLTLARGLNYYTGAIF 303

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD-------SVAPF 347
            +       G+          +   G   V         D    +          S+   
Sbjct: 304 EVKALDVQIGSITGGGRYDNLTGVFGMEGVSGVGFSFGADRIFDVLNQLDLYPEGSLKTT 363

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           ++  +N    +++       + A++ K G          ++  Q   AD    P   IVG
Sbjct: 364 QLLFVNFGQKEEIHL---LPLIAKVRKAGIRTELYPESTKMKKQMGYADAKKIPFVAIVG 420

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              ++++K+ +K+ LTG +  +++EE+I   
Sbjct: 421 ENEMAENKINLKNMLTGEQTLVTIEELIERF 451


>gi|301128277|ref|XP_002909994.1| histidyl-tRNA synthetase [Phytophthora infestans T30-4]
 gi|262108991|gb|EEY67043.1| histidyl-tRNA synthetase [Phytophthora infestans T30-4]
          Length = 776

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/443 (12%), Positives = 113/443 (25%), Gaps = 45/443 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           + +KG   +LP      + +   IR    R   +E+  P  +  +    +G+Y    K +
Sbjct: 328 KIAKGSQDFLPHQMALREKIFNKIRMVFKRHAGVEIETPVFELKETL--TGKYGEDSKLI 385

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             LAD+  + +                      +          +      P+    R R
Sbjct: 386 YDLADQGGELLALRYDLTVPFARFMAL-----HSPGNIKRYHIARVYRRDNPQMARGRFR 440

Query: 154 EFLMKDAYSFD-LTPEGSKHSYNKMFVSYLRIFHRLGLKS----IPMRAESG-PIGGDLS 207
           EF   D        P         + +  L+ F  LG         +  ++   I G   
Sbjct: 441 EFYQCDFDIAGTYAPMLPDAEVLSIGIEVLQQFPELGPVKVKLSHRLLLDAILAICGVPV 500

Query: 208 HEFIVLA------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
            +F          D         +   +  IP E  D  +         +         +
Sbjct: 501 DKFRTTCSAIDKLDKEPWSDVRREMVDEKDIPEEVADRIEPFVCKVGSPRELHAQLVKEN 560

Query: 262 V--HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF----KGADGKDHYVQMG 315
           +   N     ++ +   +      +G + +     SL     +                 
Sbjct: 561 MFGDNANARRAMDDLALLFNYLEAMGVLDFISFDLSLARGLDYYTGLIYEFVLTSPEHHV 620

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC---------- 365
                  R    V   S   + I         +     + AH +                
Sbjct: 621 GSIAAGGRYDNLVGMFSATDQQIPCVGVSLGIERIFGILHAHAEKQSANAAPPSQVLVAS 680

Query: 366 ---------EKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                     ++  +L               +   Q   A   G P  V++G   ++   
Sbjct: 681 TSNDLTMPRLELCKQLWLANISAEVMQTENPKFIKQLHYALERGTPYMVVIGVDELAKGV 740

Query: 416 VEIKHRLTGIREDMSLEEVINYA 438
           V++K   +    ++   EV++  
Sbjct: 741 VKMKDMASKDEVNVPRSEVVSEL 763


>gi|171059548|ref|YP_001791897.1| histidyl-tRNA synthetase [Leptothrix cholodnii SP-6]
 gi|170776993|gb|ACB35132.1| histidyl-tRNA synthetase [Leptothrix cholodnii SP-6]
          Length = 433

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/418 (12%), Positives = 105/418 (25%), Gaps = 30/418 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +     +R    R G   +  P ++   L+V   G   D   KEM  
Sbjct: 10  GMNDLLPPESARWEWFEHTVRALMRRYGYANIRTPIVEPTPLFVRGLGEVTDIVEKEMYS 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+ +   +                           + I   FR E   R    +  + 
Sbjct: 70  FEDKMNGDALTLRPEGTAGVVRAVVEHSMLYEGGKRLFYIGPMFRHERPQRGRYRQFHQV 129

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            ++         +       +     L +       +   +A+           +     
Sbjct: 130 GVEALGFAGPDVDAEVILMARSLWRDLGLTDVRLELNSLGQADERRAHRAALIAYFEQH- 188

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF---DSLP 272
             E      +     P+   +T    + ++     Q        S  H + +    D++ 
Sbjct: 189 LDELDAEAQRRLHSNPLRILDTKNPAMQAIVEAAPQLMDFLGEASLKHLDAVKAQLDAVG 248

Query: 273 ENKRVSAR-----GIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           +  R++ R           +F       G + ++     + G   +       + G G  
Sbjct: 249 QPYRINPRLVRGMDYYNLTVFEWVTDRLGAQGTICGGGRYDGLIEQIGGKPAPAVGWGLG 308

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
                 +                            D             L   G  V   
Sbjct: 309 IERVIELLKESGVTAPATSPDAYAVVP--------DAAALPIATACAEALRAAGIAVVMH 360

Query: 383 ----DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL--TGIREDMSLEEV 434
               D    + SQF  AD  G    ++ G+  ++   V +K      G +    + +V
Sbjct: 361 AAGKDGPGSMKSQFKKADASGATFALVFGADELAQGMVAVKPLRAGGGAQVLRPIADV 418


>gi|259502043|ref|ZP_05744945.1| serine-tRNA ligase [Lactobacillus antri DSM 16041]
 gi|259169956|gb|EEW54451.1| serine-tRNA ligase [Lactobacillus antri DSM 16041]
          Length = 444

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 85/248 (34%), Gaps = 18/248 (7%)

Query: 14  NPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            P+       +L +    R G +         +L LG +    V   + +E  + G  E+
Sbjct: 147 APKHHWDVGEQLGILDFDRAGKV--SGSRFVYYLGLGAQLERAVYNFMLDEHMKDGYTEV 204

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + +AD    +G++  + + + ++   N + M   PT E  +T+ +R  +     LP
Sbjct: 205 LPPYIVNADSMYGTGQFPKFKEGVYQV---NGEDMTLIPTAEVPLTNYYRGEVIPAEELP 261

Query: 130 FTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                +   FR E         G++R  +F   +   +    +           +   I 
Sbjct: 262 VYVTALTPCFRSEAGAAGRDTRGLIRMHQFNKVEMVKYTKPEDSWDELEKMT-ANAENIL 320

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +L +    +   +  +    S     E  + A     +V    + +DF     +T + D
Sbjct: 321 KKLEIPYHVITLTTSDMSFTASETHDLELWMPAQEKYREVSSCSNCLDFQARRMHTQYRD 380

Query: 242 IISLNSIV 249
                  V
Sbjct: 381 ENGKLQYV 388


>gi|222153600|ref|YP_002562777.1| seryl-tRNA synthetase [Streptococcus uberis 0140J]
 gi|254783494|sp|B9DVD8|SYS_STRU0 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|222114413|emb|CAR43194.1| seryl-tRNA synthetase [Streptococcus uberis 0140J]
          Length = 425

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L D N
Sbjct: 165 FYKNLGARLERALYNFMLDEHAKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELKDSN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILDGKDLPINFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVLALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|196037936|ref|ZP_03105246.1| histidine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|229092286|ref|ZP_04223458.1| Histidyl-tRNA synthetase 1 [Bacillus cereus Rock3-42]
 gi|196031206|gb|EDX69803.1| histidine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|228690988|gb|EEL44755.1| Histidyl-tRNA synthetase 1 [Bacillus cereus Rock3-42]
          Length = 425

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 59/429 (13%), Positives = 131/429 (30%), Gaps = 45/429 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   ++   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYEIMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRELALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  +  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFQTLNLEVTIQYNNRKLLNGILQAINMPTELTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDF-DDIISLNSIVEQWTAPY---AATSD 261
            D  E          V       +      NT      +S+    E +  P         
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLQLSMADFKEAFNNPLVTNGVNEL 245

Query: 262 VHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++   +L  N+         RG+ +     +          +  G+ G+   +    
Sbjct: 246 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAF 305

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-- 374
            G         +          +           +  I    ++    C +I  +L    
Sbjct: 306 RGDDMSYPTVGISFGLDVIYTALAQKETISSTADVFIIPLGTELQ---CLQIAQQLRSTT 362

Query: 375 -VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +  ++         G +   A    +    P  +I+G + +S + V +++   G    +
Sbjct: 363 SLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTNTVMLRNMKEGSEVKV 416

Query: 430 SLEEVINYA 438
            +  + NY 
Sbjct: 417 PISSLSNYL 425


>gi|319939766|ref|ZP_08014123.1| seryl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
 gi|319811104|gb|EFW07415.1| seryl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
          Length = 425

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     + +
Sbjct: 165 FYKGLGARLERAIYNFMLDEHQKEGYTEVIPPYMVNHDSMFGTGQYPKFKED---TFEVS 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DTNYVLIPTAEVPLTNYYRGEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F       +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEHSYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|166364046|ref|YP_001656319.1| seryl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|189083574|sp|B0JTT9|SYS_MICAN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166086419|dbj|BAG01127.1| seryl-tRNA synthetase [Microcystis aeruginosa NIES-843]
          Length = 427

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 12/207 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG      +   + +     G  E+  P L ++D    +G+   + +E  +  D     +
Sbjct: 174 LGAALERALINFMLDRHIVAGYTEVLPPILINSDSLRGTGQLPKFAEESFKCRD---DEL 230

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+++R  I S   LP         FR E     +   G++R  +F   + 
Sbjct: 231 WLAPTAEVPVTNLYRDEILSSEQLPIKHCAYTPCFRREAGSYGKDTRGLIRLHQFNKVEM 290

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
                    ++     +  +   I   L L    +   SG +G   +     E  + +  
Sbjct: 291 VKIVHPDASAQEH-ESLVANAEAILQALQLPYRVIELCSGDLGFSAAKCYDLEVWLPSAN 349

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDII 243
              ++    +F DF     N  F +  
Sbjct: 350 TYREISSCSNFRDFQARRANIRFKEKG 376


>gi|32491323|ref|NP_871577.1| hypothetical protein WGLp574 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31340437|sp|Q8D1Y2|SYH_WIGBR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|25166530|dbj|BAC24720.1| hisS [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 432

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/429 (13%), Positives = 119/429 (27%), Gaps = 43/429 (10%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS--YGKEMLRLADRND 101
           P      + V   I +  +     E+  P ++ A L+ ++   D+    KEM    D+N 
Sbjct: 18  PECMHIWNYVETKIIKIVDSYNYKEIRFPIMEFAKLFSKAIGDDNIVVNKEMYIFLDKNK 77

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
             +   P            +     N+   +Y +   FR E   +    R R+F      
Sbjct: 78  HELALRPEGTAGCVRSCIFNKLLKNNITRLWY-MGPMFRYERPQKG---RQRQFSQLGIE 133

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKS----IPMRAESGPIGGDLSHEFIVLADTG 217
            F      ++     +     +  +               +          +F+++ +  
Sbjct: 134 IFGSDSYSAEFELISISNRIWKSLNINKHVYLELNSIGNLQERQTYQIELKKFLLIHEDK 193

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR- 276
             + F   D    PI   NT+   I +L     +        S      L D L   K  
Sbjct: 194 -IKKFFLNDITKNPIKIFNTNNKYIKNLLKQAPKIIDSIGINSRNTFFYLCDILKNLKIP 252

Query: 277 -----VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI-- 329
                   RG++  +   F        +       G  +   + + G      V   I  
Sbjct: 253 YKINPFLFRGLDYYNDIVFEWMSKEINNTKIAICSGGRYDNLVKNMGGIYTPAVGCAIGL 312

Query: 330 ---ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                             +     +      ++      EK+          +  D+  +
Sbjct: 313 ERLIMLVSSLSKEIKKKSSIDICIIPINIKIEKEVLIFSEKLRDIF-SYKLRIKVDNSQK 371

Query: 387 QI----------GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                       GS+            +I+G   + + ++ IK+  T  +  + +++ I 
Sbjct: 372 NFKKKLKDADKLGSKI----------VIILGENEIKNKQITIKNLSTRKQYTLYIDDAIE 421

Query: 437 YASHRFSNN 445
                F+ N
Sbjct: 422 KIKKIFTKN 430


>gi|226310121|ref|YP_002770015.1| histidyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|226093069|dbj|BAH41511.1| histidyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 433

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 125/421 (29%), Gaps = 40/421 (9%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYG 107
               + A+        G   +  P LQ  +L   + G  D   KE+ RL D+ D+ +   
Sbjct: 26  IRRTLEAV----FETYGCKPLETPMLQHYELLASKYGGGDEILKEVYRLNDQGDRELGLR 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
                 +T      +     +PF  Y+I   FRD         R REF+  D      T 
Sbjct: 82  YDLTVPLT--KVVGMNPEMRMPFKRYEIGKVFRDGPVKTG---RLREFIQCDVDIVGTTS 136

Query: 168 EGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
             ++    +  F ++ R+   + ++    +  SG +      E  V  +     +     
Sbjct: 137 VLAEAELLSMAFEAFKRLGLDVYIEVNNRKLLSGVLQ-----ELGVPVERAGDVMLSLDK 191

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAA---TSDVHNEKLFDSLPENKRVSAR--- 280
                +     D  +     S+V   T+       T D+  E+    L +      R   
Sbjct: 192 LEKIGVDGVRDDLRERNVEESLVLAITSFLQEGVITLDLLKERFTSPLVQEGIRELREML 251

Query: 281 ------GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
                 G+     F       L +                 S G G              
Sbjct: 252 AYVTGAGVAGELRFSPFLARGLGIYTGIVYEIFLQDGSMTSSIGSGGRYDQIIGRLLDDG 311

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLSKVGCDVFWD 382
            +      S     I       + +  R A               +  RL + G  V  +
Sbjct: 312 REYPAVGISFGLDVILAALANRNTEEQRAADVLVIPLGTEASSLGLANRLRESGIRVELE 371

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             G ++      A+  GF   +I G   V+  +V ++    G  + + LE V  + S + 
Sbjct: 372 LTGRRLKKALDYANKEGFAFALIYGENEVNSGQVVVRDMREGTEQPVPLELVEKWLSDKL 431

Query: 443 S 443
           S
Sbjct: 432 S 432


>gi|324991702|gb|EGC23634.1| serine--tRNA ligase [Streptococcus sanguinis SK353]
          Length = 425

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 93/260 (35%), Gaps = 21/260 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +     M  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEEL-ENMTANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD----IISLNSIVEQWTAPYAAT-----SDVH 263
            A     ++    +  DF        + D     + L   +         T      +  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEADGKVKLLHTLNGSGLAVGRTVAAILENYQ 400

Query: 264 NEKLFDSLPENKRVSARGIE 283
           NE    ++PE  R    G+E
Sbjct: 401 NEDGSVTIPEVLRPYMGGLE 420


>gi|118430888|ref|NP_146977.2| misacylated tRNAthr hydrolase [Aeropyrum pernix K1]
 gi|150421685|sp|Q9YFY3|SYT2_AERPE RecName: Full=Probable threonyl-tRNA synthetase 2; AltName:
           Full=Threonine--tRNA ligase 2; Short=ThrRS 2
 gi|116062213|dbj|BAA79028.2| misacylated tRNAthr hydrolase [Aeropyrum pernix K1]
          Length = 421

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 46/110 (41%), Gaps = 5/110 (4%)

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                ++ P + ++I + +  +      ++I   L+  G  V     G  +G +   A  
Sbjct: 308 PYLNPTLTPVQSAVIPVDSESEG---YAQRIAEDLAASGVRVSI-VRGSGLGRRVREAGR 363

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMSLEEVINYASHRFSNNR 446
               L ++VG +      V ++ R   G +E ++L+E+ + A    S +R
Sbjct: 364 SWASLVIVVGKREEETGTVVVRRRWEPGKQEVLTLDELSSEAKKLASGSR 413


>gi|30180061|emb|CAD84061.1| hisS; histidine-tRNA synthetase protein [Nitrosomonas europaea ATCC
           19718]
          Length = 410

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/400 (13%), Positives = 96/400 (24%), Gaps = 23/400 (5%)

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYGPTHE 111
              IR      G   +  P ++  DL+V S G   D   KEM    D  +   +      
Sbjct: 16  EDTIRTWLAAYGYRNLRTPIVEQTDLFVRSIGEVTDIVEKEMYTFVDHLNGENLTLRPEG 75

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLTP 167
                            P   Y     FR E       R       E L       D   
Sbjct: 76  TASCVRAVIEHNLLYAGPQRLYYSGPMFRHERPQKGRYRQFHQVGVEALGFAGPDIDAEL 135

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
                   ++            L S   R+           +F    D    +   +   
Sbjct: 136 IVMCARLWRLLGISDVRLEISTLGSTESRSVYRARLISYLEKFCDDLDEDARRRLKTNPL 195

Query: 228 --MDFPIPSENTDFDDIISLNSIVEQ--WTAPYAATSDVHNE----KLFDSLPENKRVSA 279
             +D   P+          L   +++       A    + N+    ++ + L        
Sbjct: 196 RILDSKNPAMREILAGAPRLFDDLDEDSLAHFEALQRILRNQDISFEINNRLVRGLDYYN 255

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           R +        G + ++     + G   +       + G          +   +   G  
Sbjct: 256 RTVFEWVTDKLGAQGTICAGGRYDGLIAQIGGKPAPACGFAMGIERILALMGENGAVGAH 315

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
               +              +   +   K+   L   G  V     G    +Q   AD  G
Sbjct: 316 AIPDIYVVHQG--------EAAAEFSWKVAESLRDDGLKVVLHSGGGNFKAQMKKADASG 367

Query: 400 FPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYA 438
                I+G   V   ++ IK  R    +  + L       
Sbjct: 368 ARFAAIIGEDEVVAGQISIKPLREAAEQIRVDLAGAAALL 407


>gi|323477909|gb|ADX83147.1| histidyl-tRNA synthetase [Sulfolobus islandicus HVE10/4]
          Length = 426

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/414 (12%), Positives = 127/414 (30%), Gaps = 29/414 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
           +  + +  R+   + G  E+  P ++   L+   G  +   + M    D+ D+ +   P 
Sbjct: 21  IRYLESTFRDLAIKYGYSEIITPVVEEFKLFALKG-GEELRETMYVFKDKADRELSLRPE 79

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
               +   +  +++S       FY   +   DE  P++G  R  EF          +   
Sbjct: 80  ITPSVARAYIQNLQSSPKPIRLFYFGTVYRYDE--PQYGRYR--EFRQAGIEMIGDSSIL 135

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFM 228
           +      +   Y           I ++  +  I   +  ++ +  +  E  +    K+ +
Sbjct: 136 ADLEVLDLL--YNFYDKLNLSNDITIKINNIGIFRKIMDKYNIEDNLQEHILHLIDKNKI 193

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD---------------SLPE 273
           +  +     +  +   ++   +  T       D+ +    +                L  
Sbjct: 194 NEALDILEKNLKNKDIIDFFNKILTKKDTKLEDIESLAELEEVSRLDIKSEFLYLFRLSR 253

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY-----GIGAMRVVAAV 328
             R     I++   F  G  Y   +         +      G Y       G +   A  
Sbjct: 254 ILRNLNIKIKIDLGFVRGLAYYTGLIFEVLHPSVQFSIAGGGRYDKLIELYGGLPSPAIG 313

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                +   ++  D      +++I I   +         +   L K    V  +   + +
Sbjct: 314 FAIGVERTLLVIKDLKVEEPVNVIVIGMSEDTIPSM-FMVSRILRKEEYKVVINTKDQPL 372

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
                     GF + +I+G + +  + + +++ +T  +  + LE + +      
Sbjct: 373 SKLLPYYASQGFKVAIIIGKQELEKNMITVRNLITRKQISVPLENIEDAIKQTL 426


>gi|239978421|ref|ZP_04700945.1| histidyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291450317|ref|ZP_06589707.1| histidyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291353266|gb|EFE80168.1| histidyl-tRNA synthetase [Streptomyces albus J1074]
          Length = 420

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/415 (13%), Positives = 116/415 (27%), Gaps = 12/415 (2%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y  LP        V   I      +G   +  P  +   L+        D   KEM  
Sbjct: 9   GTYDLLPPDSATYLAVREAISAPLRNSGYGYIETPGFEDVALFARGVGESTDIVTKEMYA 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              +    +   P     +             NLP   +     +R E   +    R R 
Sbjct: 69  FETKGGDQLALRPEGTASVLRAALEASLHKAGNLPVKLWYSGSYYRYERPQKG---RYRH 125

Query: 155 FLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFI 211
           F    A       P            +Y  +  R     +    +    P+      EF+
Sbjct: 126 FSQVGAEAIGAEDPALDAELIILADQAYRSLGLREFRILLNSLGDQECRPVYRAALQEFL 185

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              D  E             +  +  D    ++   ++  +              L  + 
Sbjct: 186 RGLDLDEETRRRIDINPLRVLDDKRADVQKQLTDAPVLRDYLCDACKAYHEEVRALISAA 245

Query: 272 P---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               E+     RG++      F   +    S +  G  G+   +     G     V  A+
Sbjct: 246 GVVFEDDERLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGPALPSVGWAL 305

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +     + +      +  R A   +  RL + G    +   G+ +
Sbjct: 306 GVDRTVLALRAEGVELDLPSPTSVFAVPLGEEARRALFGVVTRLRQDGVAADFAYGGKGL 365

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +    A+  G    ++ G + +++  V++K   +G +  + L+ V+   + R +
Sbjct: 366 KAAMKAANRSGARYTLVAGERDLAEGVVQLKEMESGEQTAVPLDSVVAEVAARLA 420


>gi|70608065|ref|YP_256935.1| threonyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
 gi|68568713|gb|AAY81642.1| threonyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
          Length = 387

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 6/115 (5%)

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
               + ++      + P  + P ++ ++ +K           KI + +      V  DD+
Sbjct: 253 TYYFLYNASTKAPPMLPLWMNPIQVRILPVK---SDYLQDAFKIASYIKA---RVDVDDI 306

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            + +GS+ A A     P  V++G + V    + IK R    +   +++E+     
Sbjct: 307 NDNLGSKIARAGKEWIPFVVLLGEREVKTGSLTIKLREKNEQRSYTIDELNEEIK 361


>gi|167044235|gb|ABZ08916.1| putative tRNA synthetase class II core domain (G, H, P, S and T)
           [uncultured marine microorganism HF4000_APKG5H11]
          Length = 429

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 11/208 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
            Y+ L  G K    + A + +   N  G  E+SVP +   ++   SG    +   +    
Sbjct: 163 FYTMLGYGPKLERALIAWMLDLHSNEHGYTEVSVPAVVKREIMEGSGNLPKFADNLY--- 219

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             ++  +   PT E  +T+++R  I     LP  +      FR E     R   G+ R  
Sbjct: 220 HDDEDDLWLIPTAEVPITNLYRDEIIPANTLPLKYVAQTPCFRREKASAGRDTRGIKRVH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--GDLSHEFI 211
           +F   + Y F      ++     +      +  +LG     ++  +G +G     +++  
Sbjct: 280 QFNKVEMYQFVEPETSNQEL-ENLVDDAEDVCRKLGFTYRVLQLCTGDMGFASSKTYDIE 338

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           V A   E  +  S         +  ++ 
Sbjct: 339 VWAAGCEEWLEVSSCSNCTDFQARRSNI 366


>gi|163793921|ref|ZP_02187895.1| Histidyl-tRNA synthetase, class IIa [alpha proteobacterium BAL199]
 gi|159181032|gb|EDP65549.1| Histidyl-tRNA synthetase, class IIa [alpha proteobacterium BAL199]
          Length = 414

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/392 (14%), Positives = 113/392 (28%), Gaps = 25/392 (6%)

Query: 63  RTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
           R G  E+  P  +  +++        D   KEM    DR  + +   P     +     S
Sbjct: 34  RYGFGEIETPIFEFTEVFERPLGEATDVVTKEMYTFTDRGGEQLTLRPEGTASVCRALIS 93

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM--- 177
              + ++LP  FY     FR E   +    R R+F              +          
Sbjct: 94  GGLT-QSLPAKFYYQGPMFRYERPQKG---RMRQFHQIGIELLGAAEPQADIEVIACGAD 149

Query: 178 -FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA------DTGETQVFCSKDFMDF 230
              +   +       +     ES         E+          D+           +D 
Sbjct: 150 ILDAIGVLDRTTLELNTLGDTESRRAYRGALVEYFSAYRDALSEDSLRRLEVNPLRILDS 209

Query: 231 PIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
               +     D  S +  +   +   + A +   +      +     V          F 
Sbjct: 210 KDEGDRRLIKDAPSFDDHLNAASKDFFGAVTQGLDALGVRFVRNPHLVRGFDYYCHTAFE 269

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           F T  +L    T       D  V+            AA IE       +    +     I
Sbjct: 270 FVTD-ALGAQGTVMAGGRYDGLVETLGGPAIPGVGWAAGIE---RLSLLAEGIAEPVRPI 325

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           +++ +  + +       K+  RL + G  +     G  +G +   A  LG    VI+G  
Sbjct: 326 AIVPVGPNGE---AEALKLSHRLRRAGFTIEHGYTG-NLGKRLKRATKLGARAAVILGED 381

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            ++   V+++    G +++  L+ +    +  
Sbjct: 382 ELARGMVQLRDLDAGAQDEAPLDRIEESLARL 413


>gi|57239428|ref|YP_180564.1| histidyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58579400|ref|YP_197612.1| histidyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|81672776|sp|Q5HAI0|SYH_EHRRW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|57161507|emb|CAH58433.1| histidyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58418026|emb|CAI27230.1| Histidyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
          Length = 414

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/414 (13%), Positives = 129/414 (31%), Gaps = 44/414 (10%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLRLADRNDKAMIYGP 108
              +  + +   +R G I +  P ++  +++ + G   D   KEM    D+  + +   P
Sbjct: 23  FQYIQHLAQTIASRYGFIPVDTPIIEFTEVFTKLGNTSDIVTKEMYNFKDKAGEDITLRP 82

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
                +  +  S       +P   +     FR E   +    R R+F   +   F     
Sbjct: 83  EFTSAIVRLLISKNL---TIPVKLFSSGPVFRYERPQKC---RQRQFHQINFEFFGSDSP 136

Query: 169 GSKHSYNKMFVSYLRIFH--RLGLKSIPMRAESGPIGGDLSH--EFIVLA------DTGE 218
            +      +  + L            I    +   I     H  E++         D+  
Sbjct: 137 IADVEMISLCYNILSELKLSDRIKLEINFLGDQETINSYKIHLVEYLNKYQKDLSEDSQR 196

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY------AATSDVHNEKLFDSLP 272
             V      +D   P +     +  S++    Q +  +         +   N  +  ++ 
Sbjct: 197 RLVVNPLRILDSKSPEDCKILLNAPSISDFYNQNSQNFFKEVLDGLDNLSINYVINHNIV 256

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
                  + +        G++ S+     + G           + G  A     + +   
Sbjct: 257 RGLDYYCKTVFEFTTSELGSQNSVIAGGRYDGLVKSMGGHSTPAIGFAAGVERLSALIDY 316

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD-MGEQIGSQ 391
                    +   P +I LI I            K+   L   G  V W++  G  +   
Sbjct: 317 ---------EHKKPKRIVLIPIG---DDAISYAIKLAYELRCKGIHVCWNNYRGTSL--- 361

Query: 392 FAVADLLGFP---LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               +L       + +I G + +  + V++K   TG ++++++ ++++   +R 
Sbjct: 362 --KNELRKANDTDIVLIFGDEELQSNTVKVKDMKTGDQQNVAVCDLLDNLLYRI 413


>gi|312868969|ref|ZP_07729149.1| serine--tRNA ligase [Lactobacillus oris PB013-T2-3]
 gi|311095533|gb|EFQ53797.1| serine--tRNA ligase [Lactobacillus oris PB013-T2-3]
          Length = 433

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 84/248 (33%), Gaps = 18/248 (7%)

Query: 14  NPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            P+       +L +    R G +         +L LG +    V   + +E  + G  E+
Sbjct: 136 EPKHHWDVGEQLGILDFDRAGKV--SGSRFVYYLGLGAQLERAVYNFMLDEHMKDGYTEV 193

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + +AD    +G++  + + + ++   N + M   PT E  +T+ +R  +     LP
Sbjct: 194 LPPYIVNADSMYGTGQFPKFKEGVYQV---NGEDMTLIPTAEVPLTNYYRGEVIPEEELP 250

Query: 130 FTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                +   FR E         G++R  +F   +   +                +   I 
Sbjct: 251 VYVTALTPCFRSEAGAAGRDTRGLIRMHQFNKVEMVKYTKPENSWDELEKMT-ANAENIL 309

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +L +    +   +  +    S     E  + A     +V    + +DF     +T + D
Sbjct: 310 KKLDIPYHVITLTTSDMSFTASETHDLELWMPAQKKYREVSSCSNCLDFQARRMHTQYRD 369

Query: 242 IISLNSIV 249
                  V
Sbjct: 370 ENGKLQYV 377


>gi|227549168|ref|ZP_03979217.1| histidyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078728|gb|EEI16691.1| histidyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 427

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/394 (13%), Positives = 114/394 (28%), Gaps = 26/394 (6%)

Query: 57  IREEQNR----TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           +R+E  R     G   + +P  +   L+        D   KEM   ADR D+++   P  
Sbjct: 30  VRDEFARQARLAGYQHIELPVFEDTTLFARGVGESTDVVSKEMYTFADRGDRSVTLRPEG 89

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +      H      LP         FR E RP+ G  R  +  +         P   
Sbjct: 90  TAGVMRAVIEHNLDRGYLPVKLNYYGPFFRYE-RPQAGRYRQLQ-QVGVEAIGVDDPLLD 147

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGET-----QVFC 223
                     Y  +        +    ++   P   +   +F+   D  E      ++  
Sbjct: 148 AEIIALADRCYRAVGLTGFRLELTSLGDNTCRPAYREKLQKFLFSLDLDEETRRRAEINP 207

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
            +   D     +    D  + ++ + ++  A +   +   +    D +   + V      
Sbjct: 208 LRVLDDKRPEVKAMTADAPLMIDHLSDEARAHFDTVTATLDAMGVDYVINPRMVRGLDYY 267

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
               F F        S    G        Q+G   +  +     V  +    +       
Sbjct: 268 TKTTFEFVHDGLGAQSGIGGGGRYDGLMAQIGGQDLSGIGFGLGVDRTVLALEAEGVTLD 327

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ-----FAVADLL 398
               ++ +  +   ++  +     I   L   G            G +        AD  
Sbjct: 328 GVERRVDVFGVAMGEEASKRMSLLI-DDLRAAGISA-----DMSYGGRGLKGAMKGADRA 381

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           G    +++G   +  S+V +K+     +  ++L+
Sbjct: 382 GAKFALVLGDNELEASEVAVKNLAEHSQTSVALD 415


>gi|194098171|ref|YP_002001219.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|193933461|gb|ACF29285.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
          Length = 421

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/427 (13%), Positives = 112/427 (26%), Gaps = 39/427 (9%)

Query: 41  SWLPLGQK-------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
             LP+GQK               +       G  ++  P ++   L+V S     D  GK
Sbjct: 3   DLLPVGQKDFKLTAVFWQAFEDTVNRWTRAYGYQQIRTPIVEQTGLFVRSIGEETDVVGK 62

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   +D ND   +                     N P   + +   FR E   +    R
Sbjct: 63  EMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERPQKG---R 119

Query: 152 SREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLS 207
            R+F      +     P+            + ++  R  L          E         
Sbjct: 120 YRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREERAAHRAAL 179

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E++   +    +    +     P+   +T   D+  + +   +        S  H  + 
Sbjct: 180 VEYLTRYEAQLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEASQNHYARF 238

Query: 268 F-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                           L        + +        G + ++     + G   +      
Sbjct: 239 KAMLDGLGIQYIENSRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIEELGGKPA 298

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            S G         ++ S +    +     V             D             L  
Sbjct: 299 PSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA----QALRA 350

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEE 433
            G +V      + + +Q   AD  G    +IV    ++D  V +K       ++ +S  +
Sbjct: 351 QGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELADGTVTLKDMNGAHGQQTVSATD 410

Query: 434 VINYASH 440
           + +    
Sbjct: 411 LTDTLQQ 417


>gi|326798720|ref|YP_004316539.1| histidyl-tRNA synthetase [Sphingobacterium sp. 21]
 gi|326549484|gb|ADZ77869.1| Histidyl-tRNA synthetase [Sphingobacterium sp. 21]
          Length = 463

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 61/165 (36%), Gaps = 4/165 (2%)

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
             +  G  +Y G+ + +  +    G+ G        +   G   +    I    D    +
Sbjct: 294 ITLARGLNYYTGSIFEVKTNEVSMGSIGGGGRYDDLTGMFGLPGLTGVGISFGADRIYDV 353

Query: 340 WPD----SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA 395
             +      +  K + + +   DQ   D    +   L K G       +  ++  Q   A
Sbjct: 354 LLELDLFPESTTKTTQVLVTNFDQSTEDYALSLLQTLRKNGIASELYPVAAKLKKQLTYA 413

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           D    P  + +G++ +S   + IK  +TG +E M+ +++ +Y  +
Sbjct: 414 DQKKIPYVIFIGAEELSSGMLTIKKMITGEQEKMAADDLFSYLIN 458


>gi|193212290|ref|YP_001998243.1| seryl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
 gi|238692624|sp|B3QM90|SYS_CHLP8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|193085767|gb|ACF11043.1| seryl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 427

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 77/237 (32%), Gaps = 19/237 (8%)

Query: 16  RDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMS 70
           +D       L L    R   I     G   +   G +    +   + +  +   G  E+ 
Sbjct: 142 KDHLELGKSLGLLDFERGAKI--TGAGFPVYTGKGARLERALINFMLDTHSANHGYTEVF 199

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + + +    +G++  +  ++       +  +   PT E  +T++ R  +     LP 
Sbjct: 200 PPFMVNKESLRGTGQWPKFADQVY---HMPEDGLYAIPTAEVPVTNLHRGEMLEDDKLPI 256

Query: 131 TFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            +      FR E     +   G +R  +F   +       PE S  +  ++      I  
Sbjct: 257 AYAAYSACFRREAGSYGKDTRGFLRVHQFNKVEMV-RFTRPEKSYEALEEILSHAEAILC 315

Query: 187 RLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            L +    +   SG I  + +     E    A+    +     +F D+     N  F
Sbjct: 316 ALKIPYRVITLCSGDISANAAKCYDIEVWSPAENKYLEASSVSNFEDYQARRSNIRF 372


>gi|325686987|gb|EGD29011.1| serine--tRNA ligase [Streptococcus sanguinis SK72]
          Length = 425

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 92/260 (35%), Gaps = 21/260 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD----IISLNSIVEQWTAPYAAT-----SDVH 263
            A     ++    +  DF        + D     + L   +         T      +  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDETDGKVKLLHTLNGSGLAVGRTVAAILENYQ 400

Query: 264 NEKLFDSLPENKRVSARGIE 283
           NE    ++PE  R    G+E
Sbjct: 401 NEDGSVTIPEVLRPYMGGLE 420


>gi|306922578|gb|ADN07465.1| glycyl-tRNA synthetase, 3 prime [Microtus ochrogaster]
          Length = 172

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 45/133 (33%), Gaps = 8/133 (6%)

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYA 370
              G  R++  ++E +   +      +   F   +   K      + +Q      +++  
Sbjct: 10  PSFGLGRIMYTILEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSE 69

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLTGIRED 428
            L++ G     DD    IG ++A  D +G    + +    V+       ++ R +  +  
Sbjct: 70  ALTRNGVSHKVDDSSGSIGRRYARTDEIGVAFGITIDFDTVNKTPHTATLRDRDSMRQIR 129

Query: 429 MSLEEVINYASHR 441
             + E+       
Sbjct: 130 AEVSELPGVVRDL 142


>gi|157737211|ref|YP_001489894.1| histidyl-tRNA synthetase [Arcobacter butzleri RM4018]
 gi|157699065|gb|ABV67225.1| histidyl-tRNA synthetase [Arcobacter butzleri RM4018]
          Length = 413

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/381 (14%), Positives = 115/381 (30%), Gaps = 16/381 (4%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
              G   +  P L+   L+  S     D   KEM +  D+ +  +   P     +   F 
Sbjct: 41  KNYGFSYLETPLLEETALFKRSVGESSDIVNKEMYQFIDKGENDVCLRPEGTAGVVRHFV 100

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
                     + +Y     FR E   +    R REF       F +       +   M  
Sbjct: 101 EKKLDRAGGNYKWYYYGPMFRYERPQKG---RLREFHQFGCEVFGIDSVYEDANIIIMIK 157

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEF-IVLADTGETQVFCSKDFMDFPIPSENTD 238
             L  F    +  +        +     +    + +   E    C++  +  PI   +  
Sbjct: 158 EILDFFGIGFILKLNSLGCKECMPPYKENLVKHLTSFKDELCEDCNRRILTNPIRVLDCK 217

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
            +   SL     + T     + +   EKL + L  +    +  I+   +      Y+   
Sbjct: 218 NEKCQSLLVNAPKITNNLCNSCNDDFEKLKEIL--DFNNISYEIDSNLVRGL-DYYNKTA 274

Query: 299 SATFKGADGKDHYVQMGSY----GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                   G    +  G               A I  +   + ++    +   +  ++ +
Sbjct: 275 FEFVSNEIGAQSAIAGGGRYDRLVEFLGGKSTAGIGFAIGIERLLELIKMPKVEEDIVYL 334

Query: 355 KAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
            A D+   +    I   + K        +      G  F +A+ LG  +  ++G   ++ 
Sbjct: 335 GALDEKSLNTV--IKTAIKKRKTTKTLVEYAPRSFGKHFGIAEKLGANIVALIGENELNS 392

Query: 414 SKVEIKHRLTGIREDMSLEEV 434
             + IK+  T  + +  LEE 
Sbjct: 393 GTIYIKNIKTQEQINKKLEEF 413


>gi|148260022|ref|YP_001234149.1| histidyl-tRNA synthetase [Acidiphilium cryptum JF-5]
 gi|166227940|sp|A5FX98|SYH_ACICJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|146401703|gb|ABQ30230.1| histidyl-tRNA synthetase [Acidiphilium cryptum JF-5]
          Length = 411

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/390 (14%), Positives = 113/390 (28%), Gaps = 29/390 (7%)

Query: 64  TGAIEMSVPTLQSADLW-----VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
            GA E + P  +   ++       S   D   KEM    DR+ +++   P     +    
Sbjct: 35  YGAAEWATPVFELTSVFARNLGETS---DVVTKEMYTFEDRSGESVTLRPEGTAGVCRAL 91

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
            S+  + + LP   +     FR E   +    R R+F              +        
Sbjct: 92  VSNGLT-QTLPQKIFYQGPMFRYERPQKG---RYRQFHQIGLEIIGAAEPLADAEAIACG 147

Query: 179 VSYLR----------IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
              L             + LG +       +  +     +E  +  ++    V      +
Sbjct: 148 QQILDELGVGASITLHINTLGDRDSRDAYRTALVDYLSRYESELSDESKVRLVKNPLRIL 207

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIF 288
           D    ++     +   +   +   +A +             +  EN R+        H  
Sbjct: 208 DTKDANDIRLLAEAPRIYDHLNPASAAFYDGLKAALSAFGIAFVENPRIVRGFDYYNHTA 267

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
           +     +L    T  G    D  V+            AA IE        +   +     
Sbjct: 268 FEFVSTALGAQGTVLGGGRYDQLVEQMGGPPTPGVGWAAGIER-----LAMLLAATPATP 322

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
             +  I   +     A  +I A L + G        G  +  +   A+ +     V++G+
Sbjct: 323 RPVAVIPMGEAEQT-AAIEILATLRRAGIAAEAAYRG-NLKKRLERANRINARAAVLIGA 380

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             ++   V +K    G + ++   E++   
Sbjct: 381 DELARGAVTLKTLDDGAQRELPRAELLAAL 410


>gi|256839200|ref|ZP_05544710.1| histidyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|256740119|gb|EEU53443.1| histidyl-tRNA synthetase [Parabacteroides sp. D13]
          Length = 451

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 64/459 (13%), Positives = 130/459 (28%), Gaps = 78/459 (16%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSAD-------------LWVE 82
           P G +          + +   IRE  +  G  ++  P +++               L+  
Sbjct: 7   PKGTRDFSPEEMAKRNYIFNTIREVFHLYGFQQIETPAMENLSTLMGKYGEEGDKLLFKI 66

Query: 83  SGRYDSYGK-EMLRLADRNDKAMIYGPTHEEVMTDI------FRSHIKSYRNLPFTFYQI 135
               D +       L ++N          + +  D+      +    ++  + PF  YQI
Sbjct: 67  LNSGDCFAGISDEELMEKNPLRFAAKACEKGLRYDLTVPFARYVVQHRNEISFPFKRYQI 126

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           Q  +R +   +    R REF   D          ++    ++         R G++    
Sbjct: 127 QPVWRADRPQKG---RYREFYQCDGDVVGSDSLINEVELIQIMDEVFH---RFGIRVCIK 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW--- 252
                 +      E I  AD                + + N +          +E+    
Sbjct: 181 MNNRKIL--SGIAEIIGEADKIVDITVAIDKLDKIGLDNVNEELRSKGLPEEAIERLQPI 238

Query: 253 -----------------------TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                                       A  D   E++  +    +      +  G  +Y
Sbjct: 239 IMLQGSNQEKIATLKEVLSASETGLKGVAELDFILERISHTPIRAELELDLTLARGLNYY 298

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI-----IWPDSV 344
            G  + +       G+          +   G   V         D               
Sbjct: 299 TGAIFEVKALDVQIGSITGGGRYDNLTGVFGMEGVSGVGFSFGADRIFDVLNQLDLYPEG 358

Query: 345 APFKISLINIKAHDQVCRDACEKIY-----ARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
           +     L+ +    +      E+IY     A++ K G          ++  Q   AD   
Sbjct: 359 SLKTTQLLFVNFGQK------EEIYLLPLIAKVRKAGIRTELYPESTKMKKQMGYADAKK 412

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            P   IVG   ++++K+ +K+ LTG +  +++EE+I   
Sbjct: 413 IPFVAIVGENEMAENKINLKNMLTGEQTLVTIEELIERF 451


>gi|315222160|ref|ZP_07864069.1| seryl-tRNA synthetase [Streptococcus anginosus F0211]
 gi|315188786|gb|EFU22492.1| seryl-tRNA synthetase [Streptococcus anginosus F0211]
          Length = 425

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHQKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRGEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F       +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEHSYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|221231277|ref|YP_002510429.1| seryl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|254783052|sp|B8ZLH8|SYS_STRPJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|220673737|emb|CAR68236.1| seryl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
          Length = 424

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  + + +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLANYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|149007999|ref|ZP_01831556.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|225856139|ref|YP_002737650.1| seryl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|225858264|ref|YP_002739774.1| seryl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|254783048|sp|C1C5E8|SYS_STRP7 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783496|sp|C1CIR2|SYS_STRZP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|147760511|gb|EDK67487.1| seryl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|225721092|gb|ACO16946.1| seryl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|225725287|gb|ACO21139.1| seryl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|332076855|gb|EGI87317.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA17545]
 gi|332204437|gb|EGJ18502.1| seryl-tRNA synthetase [Streptococcus pneumoniae GA47901]
          Length = 424

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  + + +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLANYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNNYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|218295027|ref|ZP_03495863.1| histidyl-tRNA synthetase [Thermus aquaticus Y51MC23]
 gi|218244230|gb|EED10755.1| histidyl-tRNA synthetase [Thermus aquaticus Y51MC23]
          Length = 418

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/411 (13%), Positives = 114/411 (27%), Gaps = 26/411 (6%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAM 104
            +    +    R      GA+E+  P  +   ++ +      D   KEM    DR  +++
Sbjct: 14  LRLHQRIVETARRVLEAAGALELITPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSL 73

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SF 163
              P     M   +  H       P   +     FR E   +    R R+F   +     
Sbjct: 74  TLRPEGTASMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKG---RYRQFHQVNYEALG 130

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLSHEFIVLAD 215
             +P     +   ++ S   +  R         G      R  +        ++  +  D
Sbjct: 131 SESPVLDAEAIVLLYDSLRELGLRRLSVKLSSVGDPEDRARYNAYLREVLTPYKEALSED 190

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP--- 272
           + E  V      +D     +     ++      V          +  H + +   L    
Sbjct: 191 SQERLVLNPMRILDSKSEKDQALLRELG-----VRPLLDFLGEAARAHLKAVERHLSRLG 245

Query: 273 ---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
              E +    RG++      F   +    + +  G  G+   +     G     V  A  
Sbjct: 246 VPYELEPTLVRGLDYYVRTAFEVHHQEIGAQSALGGGGRYDGLSELLGGPRVPGVGFAFG 305

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                        ++   K   + +    +   D    +   L      V +    ++ G
Sbjct: 306 VERVALALEAEGFALPEEKGPDLYLIPLLEEAVDEAFYVAETLRPR-LRVEYALGPKKPG 364

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                A   G      +G + +   ++ +K   TG +  +   EV  +   
Sbjct: 365 KGLEEALKRGAAFAGFLGEEELKAGELTLKRLATGEQVRLPYREVAGFLLS 415


>gi|322387197|ref|ZP_08060807.1| serine--tRNA ligase [Streptococcus infantis ATCC 700779]
 gi|321141726|gb|EFX37221.1| serine--tRNA ligase [Streptococcus infantis ATCC 700779]
          Length = 424

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 74/211 (35%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G Y  +  +     + +
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGNYPKFKDD---TFEIS 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DTNYVLIPTAEVPLTNYYRDEIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|157151414|ref|YP_001450960.1| seryl-tRNA synthetase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|189083593|sp|A8AYV0|SYS_STRGC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|157076208|gb|ABV10891.1| seryl-tRNA synthetase [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 425

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 92/260 (35%), Gaps = 21/260 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD----IISLNSIVEQWTAPYAAT-----SDVH 263
            A     ++    +  DF        + D     + L   +         T      +  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEADGKVKLLHTLNGSGLAVGRTVAAILENYQ 400

Query: 264 NEKLFDSLPENKRVSARGIE 283
           NE    ++PE  R    G+E
Sbjct: 401 NEDGSVTIPEVLRPYMGGLE 420


>gi|317163895|gb|ADV07436.1| histidyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 421

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/427 (13%), Positives = 112/427 (26%), Gaps = 39/427 (9%)

Query: 41  SWLPLGQK-------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
             LP+GQK               +       G  ++  P ++   L+V S     D  GK
Sbjct: 3   DLLPVGQKDFKLTAVFWQAFEDTVNRWTRAYGYQQIRTPIVEQTGLFVRSIGEETDVVGK 62

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           EM   +D ND   +                     N P   + +   FR E   +    R
Sbjct: 63  EMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERPQKG---R 119

Query: 152 SREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESGPIGGDLS 207
            R+F      +     P+            + ++  R  L          E         
Sbjct: 120 YRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREERAAHRAAL 179

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            E++   +    +    +     P+   +T   D+  + +   +        S  H  + 
Sbjct: 180 VEYLTRYEAQLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEASQNHYARF 238

Query: 268 F-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                           L        + +        G + ++     + G   +      
Sbjct: 239 KAMLDGLGIQYIENSRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYNGLIEELGGKPA 298

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
            S G         ++ S +    +     V             D             L  
Sbjct: 299 PSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA----QALRA 350

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEE 433
            G +V      + + +Q   AD  G    +IV    ++D  V +K       ++ +S  +
Sbjct: 351 QGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELADGTVTLKDMNGAHGQQTVSATD 410

Query: 434 VINYASH 440
           + +    
Sbjct: 411 LTDTLQQ 417


>gi|255012386|ref|ZP_05284512.1| histidyl-tRNA synthetase [Bacteroides sp. 2_1_7]
          Length = 451

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 62/456 (13%), Positives = 132/456 (28%), Gaps = 72/456 (15%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSAD-------------LWVE 82
           P G +          + +   IRE  +  G  ++  P +++               L+  
Sbjct: 7   PKGTRDFSPEEMAKRNYIFNTIREVFHLYGFQQIETPAMENLSTLMGKYGEEGDKLLFKI 66

Query: 83  SGRYDSYGK-EMLRLADRNDKAMIYGPTHEEVMTDI------FRSHIKSYRNLPFTFYQI 135
               D +       L ++N          + +  D+      +    ++  + PF  YQI
Sbjct: 67  LNSGDCFAGISDEELMEKNPLRFAAKACEKGLRYDLTVPFARYVVQHRNEISFPFKRYQI 126

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           Q  +R +   +    R REF   D          ++    ++         R G++    
Sbjct: 127 QPVWRADRPQKG---RYREFYQCDGDVVGSDSLINEVELIQIMDEVFH---RFGIRVCIK 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW--- 252
                 +      E I  AD                + + N +          +E+    
Sbjct: 181 MNNRKIL--SGIAEIIGEADKIVDITVAIDKLDKIGLDNVNEELRSKGLPEEAIERLQPI 238

Query: 253 -----------------------TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                                       A  D   E++  +    +      +  G  +Y
Sbjct: 239 IMLQGSNQEKIATLKEVLSASETGLKGVAELDFILERISHTSIRAELELDLTLARGLNYY 298

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD------- 342
            G  + +       G+          +   G   V         D    +          
Sbjct: 299 TGAIFEVKALDVQIGSITGGGRYDNLTGVFGMEGVSGVGFSFGADRIFDVLNQLDLYPEG 358

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           S+   ++  +N    +++       + A++ K G          ++  Q   AD    P 
Sbjct: 359 SLKTTQLLFVNFGQKEEIHL---LPLIAKVRKAGIRTELYPESTKMKKQMGYADAKKIPF 415

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             IVG   ++++K+ +K+ LTG +  +++EE+I   
Sbjct: 416 VAIVGENEMAENKINLKNMLTGEQTLVTIEELIERF 451


>gi|78185357|ref|YP_377792.1| seryl-tRNA synthetase [Synechococcus sp. CC9902]
 gi|123580767|sp|Q3AV47|SYS_SYNS9 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78169651|gb|ABB26748.1| seryl-tRNA synthetase [Synechococcus sp. CC9902]
          Length = 425

 Score = 71.7 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 74/208 (35%), Gaps = 10/208 (4%)

Query: 9   PILQENPRDAEIASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           P ++E   +    + +L L      +        + +  G +    +   + +     G 
Sbjct: 134 PRIEEGLEEHWQIAQRLNLFDTERSVRIAQSRFVTLMGQGARLERALINFMLDLHTSKGY 193

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P L +      SG+   + +E  R AD     +   PT E  +T + R  I    
Sbjct: 194 REVMPPVLVNTASLTGSGQLPKFAEESFRCAD---DDLWLTPTAEVPVTSLHRDEIIPAD 250

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP  +      FR E     R   G++R  +F   + Y F   P+ S+ ++ ++     
Sbjct: 251 QLPLRYSAYSPCFRREAGSYGRDTRGLIRLHQFNKVELYWFVH-PDQSEEAHQQITADAE 309

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            +   L L    +   +G +G      +
Sbjct: 310 AVLQALDLPYRVLDLCTGDLGFSAQRTY 337


>gi|322391061|ref|ZP_08064565.1| serine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
 gi|321142291|gb|EFX37765.1| serine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
          Length = 446

 Score = 71.7 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + EE  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 186 FYKGLGARLERAIYNFMLEEHGKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELSDTN 245

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 246 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 302

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E        +      I  +L L    +   +G +G   +     E  +
Sbjct: 303 KVEMVKFAKPEESYDELEKMVVN-AENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 361

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 362 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 392


>gi|327462380|gb|EGF08705.1| serine--tRNA ligase [Streptococcus sanguinis SK1057]
          Length = 425

 Score = 71.7 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 92/260 (35%), Gaps = 21/260 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD----IISLNSIVEQWTAPYAAT-----SDVH 263
            A     ++    +  DF        + D     + L   +         T      +  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEADGKVKLLHTLNGSGLAVGRTVAAILENYQ 400

Query: 264 NEKLFDSLPENKRVSARGIE 283
           NE    ++PE  R    G+E
Sbjct: 401 NEDGSVTIPEVLRPYMGGLE 420


>gi|125718717|ref|YP_001035850.1| seryl-tRNA synthetase [Streptococcus sanguinis SK36]
 gi|166223300|sp|A3CQ45|SYS_STRSV RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|125498634|gb|ABN45300.1| Seryl-tRNA synthetase, putative [Streptococcus sanguinis SK36]
          Length = 425

 Score = 71.7 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 92/260 (35%), Gaps = 21/260 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD----IISLNSIVEQWTAPYAAT-----SDVH 263
            A     ++    +  DF        + D     + L   +         T      +  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEADGKVKLLHTLNGSGLAVGRTVAAILENYQ 400

Query: 264 NEKLFDSLPENKRVSARGIE 283
           NE    ++PE  R    G+E
Sbjct: 401 NEDGSVTIPEVLRPYMGGLE 420


>gi|330994790|ref|ZP_08318712.1| Histidyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
 gi|329758051|gb|EGG74573.1| Histidyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
          Length = 415

 Score = 71.7 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/410 (13%), Positives = 118/410 (28%), Gaps = 35/410 (8%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMI 105
           +  ++V    R   +  G  E S P  +   ++  S     D   KEM    DR  +++ 
Sbjct: 16  RRFNHVVETARRIVSLYGFDEWSTPIFEDTRVFSRSLGDTSDVVSKEMYTFEDRGGESLT 75

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P     +     ++  + ++LP   +     FR E   +    R R+F    A     
Sbjct: 76  LRPEGTAAICRALVTNGLT-QSLPQKVFYAGPMFRYERPQKG---RYRQFHQIGAELLGA 131

Query: 166 TPEGSKHSYNKMFVSYLR----------IFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
               +      M    L             + LG  +      +  I         + AD
Sbjct: 132 AEPLADAEIIAMGRDVLGALGIGDEVVLELNTLGDTASRDAWRTALITYFSDRRDDLSAD 191

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSI----VEQWTAPYAATSDVHNEKLFDSL 271
           +           +D     +     D  +++       +++      T DV         
Sbjct: 192 SQTRLERNPLRILDSKAQQDRALVADAPTIDQFLTPEAQEFWDGLRRTLDVMGVPF---- 247

Query: 272 PENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
             +     RG++      F F T+          G        +MG     A+     + 
Sbjct: 248 -RHNPRIVRGLDYYGHTAFEFVTERLGAQGTVLAGGRYDGLVAEMGGPATPAIGWAGGIE 306

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
             S                             + A   +   +   G        G  + 
Sbjct: 307 RLSMLLAESPADPRPVAVIPMG-------ADAQAAGLTVLQAIRAAGIRAETSYRG-NMK 358

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +   A+ +     ++VGS  ++   V++K   +G + +++++ V ++  
Sbjct: 359 RRMERANRMNATHAIVVGSDEIARGVVQVKDLDSGQQAEVAMDGVADFLR 408


>gi|304405768|ref|ZP_07387426.1| seryl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304345011|gb|EFM10847.1| seryl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 426

 Score = 71.7 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 13/210 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   ++ G  E+  P + + D    +G+   + +++ ++A
Sbjct: 163 FVFYRGLGARLERALINFMMDLHSDKHGYEEILPPYIVNRDSLYGTGQLPKFEEDLFKIA 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSR 153
           D         PT E  +T+I R  I S   LP  F      FR E         G++R  
Sbjct: 223 DS---DYYLIPTAEVPVTNIAREEILSSEELPKYFVAYSACFRSEAGAAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +                 M  +  ++   LGL    +   +G +G   +     E
Sbjct: 280 QFNKVELLKLVKPETSYDEL-EAMTANAEKVLELLGLPYRVLALCTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             + +     ++    +  DF     N  F
Sbjct: 339 VWLPSADTYREISSCSNVEDFQARRANIRF 368


>gi|312865429|ref|ZP_07725656.1| serine--tRNA ligase [Streptococcus downei F0415]
 gi|311098947|gb|EFQ57164.1| serine--tRNA ligase [Streptococcus downei F0415]
          Length = 425

 Score = 71.7 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 74/211 (35%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + +P  F  +   FR E     R   G++R  +F 
Sbjct: 222 DSDYVLIPTAEVPLTNYYRGEILDGKEMPVYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F       +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPETSYEELEKMT-ANAENILQKLNLPYRVITLCTGDMGFSAAKTYDVEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNCEDFQARRAQIRYRDEA 371


>gi|325688711|gb|EGD30720.1| serine--tRNA ligase [Streptococcus sanguinis SK115]
          Length = 425

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDSKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|256788893|ref|ZP_05527324.1| histidyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 420

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/418 (13%), Positives = 122/418 (29%), Gaps = 20/418 (4%)

Query: 38  GIYSWLP----LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           G Y  LP          + + A +R     +G   +  P  ++ +L+        D   K
Sbjct: 9   GTYDLLPPDSAKFLAVREAIAAPLR----NSGYGYIETPGFENVELFARGVGESTDIVTK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM     +    +   P     +             NLP   +    ++R E   +    
Sbjct: 65  EMYVFETKGGDRLALRPETTAPVLRAVLEANLHKAGNLPVKVWYSGSQYRYERPQKG--- 121

Query: 151 RSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLS 207
           R R F    A       P            SY  +  +     +    +    P+     
Sbjct: 122 RYRHFSQVGAEAIGAEDPALDAELIILADQSYRALGLQDFRILLNSLGDQECRPVYRAAL 181

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +F+   D  E  +  ++      +  +  D    ++   ++  +             +L
Sbjct: 182 QDFLRGLDLDEETLRRAEINPLRVLDDKRPDVQKQLTEAPLLRDYLCDACKAYHEEVREL 241

Query: 268 FDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             +     E+     RG++      F   +    S +  G  G+   +     G     V
Sbjct: 242 ITAAGVVFEDDPKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGPSLPSV 301

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             A+               +     + +      +  R         L K G    +   
Sbjct: 302 GWALGVDRTVLALEAEGIELDIPSATSVFAVPLGEEARRILFAKVTELRKNGVAADFSYG 361

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G+ + +    A+  G    +++G + +++  V++K   +G +  + + E++     R 
Sbjct: 362 GKGLKAAMKAANRSGARYTLVLGERDLAEGVVQLKDMESGEQTAIGVNEIVAELESRL 419


>gi|21220009|ref|NP_625788.1| histidyl-tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|289772779|ref|ZP_06532157.1| histidyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|32130150|sp|Q9KXP2|SYH_STRCO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|8249967|emb|CAB93388.1| histidyl tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|289702978|gb|EFD70407.1| histidyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 425

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/418 (13%), Positives = 122/418 (29%), Gaps = 20/418 (4%)

Query: 38  GIYSWLP----LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           G Y  LP          + + A +R     +G   +  P  ++ +L+        D   K
Sbjct: 14  GTYDLLPPDSAKFLAVREAIAAPLR----NSGYGYIETPGFENVELFARGVGESTDIVTK 69

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM     +    +   P     +             NLP   +    ++R E   +    
Sbjct: 70  EMYVFETKGGDRLALRPETTAPVLRAVLEANLHKAGNLPVKVWYSGSQYRYERPQKG--- 126

Query: 151 RSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLS 207
           R R F    A       P            SY  +  +     +    +    P+     
Sbjct: 127 RYRHFSQVGAEAIGAEDPALDAELIILADQSYRALGLQDFRILLNSLGDQECRPVYRAAL 186

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +F+   D  E  +  ++      +  +  D    ++   ++  +             +L
Sbjct: 187 QDFLRGLDLDEETLRRAEINPLRVLDDKRPDVQKQLTEAPLLRDYLCDACKAYHEEVREL 246

Query: 268 FDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             +     E+     RG++      F   +    S +  G  G+   +     G     V
Sbjct: 247 ITAAGVVFEDDPKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGPSLPSV 306

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             A+               +     + +      +  R         L K G    +   
Sbjct: 307 GWALGVDRTVLALEAEGIELDIPSATSVFAVPLGEEARRILFAKVTELRKNGVAADFSYG 366

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G+ + +    A+  G    +++G + +++  V++K   +G +  + + E++     R 
Sbjct: 367 GKGLKAAMKAANRSGARYTLVLGERDLAEGVVQLKDMESGEQTAIGVNEIVAELESRL 424


>gi|166154758|ref|YP_001654876.1| histidyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|166155633|ref|YP_001653888.1| histidyl-tRNA synthetase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336032|ref|ZP_07224276.1| histidyl-tRNA synthetase [Chlamydia trachomatis L2tet1]
 gi|229558646|sp|B0B8B7|SYH_CHLT2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|229558647|sp|B0B9Z6|SYH_CHLTB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|165930746|emb|CAP04243.1| histidyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|165931621|emb|CAP07197.1| histidyl-tRNA synthetase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 428

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/393 (12%), Positives = 114/393 (29%), Gaps = 15/393 (3%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLADRNDKAMIYG 107
               V        N  G  E+  P  +  + ++  G   D   KE+    D+  +++   
Sbjct: 28  LWKRVEHAAHRICNLYGFDEIRTPVFEKTETFLRVGEHSDIVKKEVYTFLDKKGRSLTLR 87

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +      H    R     FY I   FR E +      +  +F ++         
Sbjct: 88  PEGTAAVVRALLDHSADMRK-DNKFYYILPMFRYERQQSGRYRQHHQFGLEAIGVRHPLR 146

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD------TGETQV 221
           +    S    F + + + H     +     ++     +   EF           + E   
Sbjct: 147 DAEVLSLLWDFYAAVGLQHMQIHVNFLGGQKTRARYDEALREFFRKDLDRLSPLSQERYH 206

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                 +D   P +    +   S+   ++     Y        + L      N R+  RG
Sbjct: 207 ANLLRILDSKEPEDQEFIEKAPSILDYIDDRDLSYFDAVLAQLKALGIPFAINPRL-VRG 265

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           ++      F    ++    ++    G  +   +   G  +M      +      + ++  
Sbjct: 266 LDYYTDLVF-EAVTVVGERSYALGGGGRYDELVAQSGGPSMPAFGFGVGLERVIQTLLEQ 324

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            +        + +   D+     C     RL  +G     D   ++       A      
Sbjct: 325 GNSLSTSTRRLRLIPMDEQADAFCFSWANRLRNLGIATEVDWSHKKPKLSLKDAADQQVS 384

Query: 402 LQVIVGSKFVSDSKVEIKHRL-----TGIREDM 429
              ++G + ++  +  +K        +G ++D+
Sbjct: 385 FVCLLGEQELATKQFIVKDMSLHQSFSGAQQDV 417


>gi|228901818|ref|ZP_04065989.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis IBL 4222]
 gi|228857839|gb|EEN02328.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis IBL 4222]
          Length = 425

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 60/423 (14%), Positives = 131/423 (30%), Gaps = 33/423 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  P L   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRTCEDTFERYGCKPLETPMLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFRTLNLEITIQYNNRKLLNGILQAINIPTELTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPY---AATSD 261
            D  E          V       +      NT    +  S++   + +  P         
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISKEMADTICNTVLSCLKLSIDDFKDAFNTPIVADGVNEL 245

Query: 262 VHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++   +L  N+         RG+ +     +          +  G+ G+   +    
Sbjct: 246 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAF 305

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV- 375
            G   +     +          +           +  I    ++    C +I  +L    
Sbjct: 306 RGDNIIYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGTELQ---CLQIAQQLRSTT 362

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V  +  G ++      A+    P  +I+G + +S   V +++   G    + L  + 
Sbjct: 363 SLKVELELAGRKLKRALNYANKENIPYVLIIGEEELSTETVMLRNMKEGSEVKVPLSSLS 422

Query: 436 NYA 438
           +Y 
Sbjct: 423 SYL 425


>gi|229075302|ref|ZP_04208295.1| Histidyl-tRNA synthetase 1 [Bacillus cereus Rock4-18]
 gi|229116789|ref|ZP_04246173.1| Histidyl-tRNA synthetase 1 [Bacillus cereus Rock1-3]
 gi|228666621|gb|EEL22079.1| Histidyl-tRNA synthetase 1 [Bacillus cereus Rock1-3]
 gi|228707853|gb|EEL60033.1| Histidyl-tRNA synthetase 1 [Bacillus cereus Rock4-18]
          Length = 428

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 60/429 (13%), Positives = 128/429 (29%), Gaps = 45/429 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 14  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 73

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 74  GKRELALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 128

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L  + I+ 
Sbjct: 129 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILQAINIPTELMSDVILS 188

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPY---AATSD 261
            D  E          +       +      NT    +  ++    E +            
Sbjct: 189 LDKIEKIGIDGVRKDILGRGITEEMADTICNTVLSCLKLTIADFKEAFNNQLVTDGINEL 248

Query: 262 VHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++   +L  N+         RG+ +     +          +  G+ G+   +    
Sbjct: 249 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAF 308

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-- 374
            G         +          +           L  I    ++    C +I  +L    
Sbjct: 309 RGDNMNYPTVGISFGLDVIYTALSQKETKSSTADLFIIPLGTELQ---CLQIAQQLRSTT 365

Query: 375 -VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +  ++         G +   A    +    P  +I+G + +S   V +++   G    +
Sbjct: 366 SLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSAETVMLRNMKEGSEVKV 419

Query: 430 SLEEVINYA 438
            L  + NY 
Sbjct: 420 PLASLSNYL 428


>gi|297289797|ref|XP_002803595.1| PREDICTED: glycyl-tRNA synthetase-like [Macaca mulatta]
          Length = 173

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 46/138 (33%), Gaps = 8/138 (5%)

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDAC 365
             +     G  R++  V E +   +      +   F   +   K      + +Q      
Sbjct: 6   PNVIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFV 65

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD--SKVEIKHRLT 423
           +++   L++ G     DD    IG ++A  D +G    V +    V+       ++ R +
Sbjct: 66  KELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDS 125

Query: 424 GIREDMSLEEVINYASHR 441
             +    + E+ +     
Sbjct: 126 MRQIRAEVSELPSIVRDL 143


>gi|254514000|ref|ZP_05126061.1| histidyl-tRNA synthetase [gamma proteobacterium NOR5-3]
 gi|219676243|gb|EED32608.1| histidyl-tRNA synthetase [gamma proteobacterium NOR5-3]
          Length = 426

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 64/446 (14%), Positives = 108/446 (24%), Gaps = 68/446 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        +   + E   R G  E+ +P ++   L+  S G   D   KEM  
Sbjct: 9   GMNDILPTEANHWQFLENRVAELLERYGYGELRLPLVEPTALFSRSIGEVTDIVEKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  +M   P            +       P   +     FR E   +    R R+F
Sbjct: 69  FEDRNGDSMSLRPEGTAGCVRAAIQNNL--IANPCRLWYSGPMFRYERPQKG---RQRQF 123

Query: 156 LMKDAYSFDLTPEGSKHS---------------------------------YNKMFVSYL 182
               A  F      +                                    Y    VSYL
Sbjct: 124 HQIGAEIFGYATPDADAELIILLARLWRVLGIADAVSLEINSIGSLEARAAYRAALVSYL 183

Query: 183 RIFHRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                   +    R  + P  I    + +   L +          +       +  +  D
Sbjct: 184 EQHRDALDEDSQRRLLTNPLRILDSKNPDTQALLNDAPALEDYLDEESMEHFAALRSYLD 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 ++  +        +    E + D L     V A G   G +   G + +  +  
Sbjct: 244 TAGVSYTVNPRLVRGLDYYNKTVFEWVTDKLGAQGTVCAGGRYDGLVQQLGGRATPGVGF 303

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                         G         +  V       +  I                     
Sbjct: 304 AMGLERLLLMLEVCGQLPEAKAPDIFVVTSGPEAQQAAIAALEHLRDAQP---------- 353

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK- 419
                 +I  +L                 SQ   AD  G  L ++ G   V+  +V +K 
Sbjct: 354 ----ALRIVQQLGGGSFR-----------SQMKKADRSGATLALLWGEDEVAAGEVTVKP 398

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R    +  + L  +          +
Sbjct: 399 LRDGQEQVRLPLVSLAQTIPSLLQQH 424


>gi|332366431|gb|EGJ44182.1| serine--tRNA ligase [Streptococcus sanguinis SK355]
          Length = 425

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 93/264 (35%), Gaps = 21/264 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD----IISLNSIVEQWTAPYAAT-----SDVH 263
            A     ++    +  DF        + D     + L   +         T      +  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEADGKVKLLHTLNGSGLAVGRTVAAILENYQ 400

Query: 264 NEKLFDSLPENKRVSARGIEVGHI 287
           NE    ++PE  R    G+EV   
Sbjct: 401 NEDGSVTIPEVLRPYMGGLEVITP 424


>gi|321476578|gb|EFX87538.1| hypothetical protein DAPPUDRAFT_192225 [Daphnia pulex]
          Length = 678

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/414 (13%), Positives = 123/414 (29%), Gaps = 76/414 (18%)

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF 163
            +   T + +  +  R    +   LPF   QI   FR+E+ PR G++R REF M +   F
Sbjct: 241 FLRPETAQGIFVNFKRLLEFNQEKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHF 300

Query: 164 DLTPEGSKHSYNKMFVS----YLRIFHRLGLKSIPMRA----ESGPIGGDLSHEFIVLAD 215
               + S   ++++       Y       G  +  +      +   I  +    F+    
Sbjct: 301 CDPTDKSHPKFSEVRDVQVLLYSACNQMDGKAAEIVTIGKAVDDKIIANETLAYFMARIQ 360

Query: 216 TGETQV--------FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
               +V        F      +    + +    + ++    VE       +  D+     
Sbjct: 361 QYMVKVGVDTRKLRFRQHMNNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLSQHTK 420

Query: 268 FDSL---PENKRVSARGIEV----------GHIFYFGTKY------------------SL 296
              +    E K    + I+V          G  F    K                   SL
Sbjct: 421 STGVRLVAERKLREPKTIDVVEAVANKGIVGKSFKKEAKEIMEALSKLEPSTVAEVEESL 480

Query: 297 PMSATFKGADG----------------------KDHYVQMGSYGIGAMRVVAAVIESSHD 334
             +  +  A G                      +++   +     G  R++ ++ E +  
Sbjct: 481 KNNGKYVLAIGANSYVLTPDMLEVKRYQKTIYVEEYVPNVIEPSFGIGRIMYSIFEHNFK 540

Query: 335 GKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
            +      +       +  +K      +++        ++   L+ +      DD    I
Sbjct: 541 VRSDGGQRTYFSLPPVIAPLKCSVLPLSNNADFVPYIRQLSRDLTALDVSNRVDDSSGSI 600

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSD-SKVEIKHRLTGIREDMSLEEVINYASHR 441
           G ++A  D +  P  + +    + +     ++ R +  +  + L+E+       
Sbjct: 601 GRRYARTDEIAIPFGITIDFDSLKEPHTATLRERDSMGQVRIPLKEIAGVVRDL 654



 Score = 38.2 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
           L+ R     Q         G + + P+G     N+ +  R         +E+    L   
Sbjct: 73  LLKRRFFFDQSFAIYGGITGQFDFGPMGCAMKANMLSTWRNFFILEEQMLEVDCSILTPE 132

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            +   SG  D +   M++     + 
Sbjct: 133 PVLKASGHVDRFADLMVKDEKNGEC 157


>gi|324992052|gb|EGC23974.1| serine--tRNA ligase [Streptococcus sanguinis SK405]
 gi|325697635|gb|EGD39520.1| serine--tRNA ligase [Streptococcus sanguinis SK160]
 gi|327459354|gb|EGF05700.1| serine--tRNA ligase [Streptococcus sanguinis SK1]
 gi|327490570|gb|EGF22351.1| serine--tRNA ligase [Streptococcus sanguinis SK1058]
          Length = 425

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 92/260 (35%), Gaps = 21/260 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD----IISLNSIVEQWTAPYAAT-----SDVH 263
            A     ++    +  DF        + D     + L   +         T      +  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEADGKVKLLHTLNGSGLAVGRTVAAILENYQ 400

Query: 264 NEKLFDSLPENKRVSARGIE 283
           NE    ++PE  R    G+E
Sbjct: 401 NEDGSVTIPEVLRPYMGGLE 420


>gi|256375836|ref|YP_003099496.1| histidyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
 gi|255920139|gb|ACU35650.1| histidyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
          Length = 421

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/413 (13%), Positives = 110/413 (26%), Gaps = 11/413 (2%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+  + P    A   V + +     R G   + +P  +   L+        D   KEM  
Sbjct: 10  GVPDYFPPNSAAFTAVRSALLGATARAGYGYIELPVFEDTALFARGVGESTDVVSKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR  +++   P     +      H      LP         FR E        R R+F
Sbjct: 70  FTDRGGRSITLRPEGTAGVMRAVIEHGLDRGQLPVKLAYAAQFFRAEQPQAG---RYRQF 126

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
                 +  +           +     R     G +                 +      
Sbjct: 127 HQVGVEAIGVDDPALDAEVIAIADEGFRALGLTGYRLELTSLGDATCRPQYREKLQAFLA 186

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE-- 273
                    +     P+   +    ++  L +         +  +  H E++   L +  
Sbjct: 187 KLPLDEDTRRRAEINPLRVLDDKRPEVRELVAEAPLMLDNLSPETLEHYERVKAHLGDLG 246

Query: 274 ----NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                     RG++      F   +    + +  G  G+   +     G     V   + 
Sbjct: 247 VKYVENPRMVRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQELSGVGFGLG 306

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                    +   +V       +         R     I A L   G        G+ + 
Sbjct: 307 VDRALLACQVEGLAVGDVTRCDVYGVPLGDAARSRLVGIGAPLRAAGVRYDMAYGGKGLK 366

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
                AD  G    +++G + +    V++K   TG + ++ L++V+       
Sbjct: 367 GAMKGADRSGARFALVLGERDIEAGVVQLKELATGEQREVPLDDVVTEVRGAL 419


>gi|328944998|gb|EGG39155.1| serine--tRNA ligase [Streptococcus sanguinis SK1087]
          Length = 425

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|329912294|ref|ZP_08275724.1| Histidyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545656|gb|EGF30811.1| Histidyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 464

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 62/435 (14%), Positives = 120/435 (27%), Gaps = 44/435 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +  +  ++      G  ++  P ++S  L+    G   D   KEM  
Sbjct: 25  GMNDILPADAGLWELFDNTVQTVLKSYGFQQIRTPIVESTSLFARGLGTVTDIVEKEMYS 84

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            AD  +  ++                       P   +     FR E   R    R R+F
Sbjct: 85  FADSMNGDLLTLRPEATAGVVRAAIEHNLTYEGPKRLWYTGPMFRHERPQRG---RYRQF 141

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
               A +   +          +       +  LGL +I +   S     + +   I L  
Sbjct: 142 HQVGAEALGFSGPDIDAELMMLCQRL---WDDLGLDNIRLELNSIGNAEERNSHRIDLIA 198

Query: 216 TGETQVFCSKDFMD-----FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE----- 265
             E  +    +         P+   +T    + ++ +   Q  A     S  H +     
Sbjct: 199 YFEQHLEVMDEEAKRRLHTNPLRILDTKNPAMQAMVNAAPQLLAYLGEESQAHFDGVQNI 258

Query: 266 --------KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
                    +   L        R +        G++ ++     +      D +    + 
Sbjct: 259 LRHNNVPFTINPRLVRGMDYYNRTVFEWVTDELGSQGTVCAGGRY--DTLFDMFGGKPTP 316

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
             G    +  ++E    G           + +            +     +  RL   G 
Sbjct: 317 SCGFAMGIERLLELMKAGGEKYAGSQCDVYVVHQG------DAAQLKASVVAERLRDAGL 370

Query: 378 DVFW---DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTG------IRE 427
           DV           + +Q   AD  G    VI+G   V+     +K  R T        + 
Sbjct: 371 DVVLHCASASSSSVKAQMKRADASGAAFAVILGEDEVAGDMATVKALRATDGETHQHQQA 430

Query: 428 DMSLEEVINYASHRF 442
            +  + V +Y   + 
Sbjct: 431 LVPFDSVADYLVDQI 445


>gi|150017930|ref|YP_001310184.1| histidyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|149904395|gb|ABR35228.1| histidyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 431

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 64/432 (14%), Positives = 137/432 (31%), Gaps = 46/432 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP  Q+   ++   I +     G +E+ +P ++ +++ +     ++  +     
Sbjct: 12  PGFMELLPKEQQIFKDIVRKITKVYEENGFLEIDIPVIEKSEVLLAKSAGETEKQVYRFN 71

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
              ND ++ +  T          +   +    PF  YQI   +R E   R    R REF 
Sbjct: 72  KGSNDLSLRFDLTVPFARF---SAQYFNELTFPFKRYQIGKVYRGERNQRG---RYREFY 125

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI-------------- 202
             D            +    +     + F  +GLK    +  +  I              
Sbjct: 126 QCDIDIIGNNRLSINND-AFVISMVSKGFKAIGLKKYKFQISNRKILSAVLNDLEIVNAT 184

Query: 203 -----------GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
                       GD   +  +    G  +       ++    +EN   D + +LN   E+
Sbjct: 185 EVLILIDKYDKIGDEEFKKSLNELIGIEKADIINKIINLDGSNENI-LDQLKNLNFNSEE 243

Query: 252 WTAPYAATSDVHNEKLFDSLPENK----RVSARGIEV--GHIFYFGTKYSLPMSATFKGA 305
           +         V        + +N+        RG++   G +F      +    +   G 
Sbjct: 244 FKKGLEELEAVKKMLKTFGVGDNEYAINLKIIRGLDYYTGTVFETFLMENEKYGSICSGG 303

Query: 306 DGK---DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                  +Y      G+G    +  +     +   +         +  +I I        
Sbjct: 304 RYDNLAQNYTDKVLPGVGISIGLTRLFFVLKEIGFLNSYKIEKSMEYLIIPIGN----TL 359

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           + C +IY +L      V      +++  +   A+ LG    ++VG       +V+IK  +
Sbjct: 360 EYCAEIYIKLINKEKYVEIYLEDDKLKKKLNYANKLGVQKVILVGEDEELSKQVKIKDMI 419

Query: 423 TGIREDMSLEEV 434
           +G  + + ++ +
Sbjct: 420 SGEEKMVDIDGL 431


>gi|324994145|gb|EGC26059.1| serine--tRNA ligase [Streptococcus sanguinis SK678]
          Length = 425

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 92/260 (35%), Gaps = 21/260 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD----IISLNSIVEQWTAPYAAT-----SDVH 263
            A     ++    +  DF        + D     + L   +         T      +  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEADGKVKLLHTLNGSGLAVGRTVAAILENYQ 400

Query: 264 NEKLFDSLPENKRVSARGIE 283
           NE    ++PE  R    G+E
Sbjct: 401 NEDGSVTIPEVLRPYMGGLE 420


>gi|323350377|ref|ZP_08086041.1| serine--tRNA ligase [Streptococcus sanguinis VMC66]
 gi|322123450|gb|EFX95126.1| serine--tRNA ligase [Streptococcus sanguinis VMC66]
          Length = 425

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|296877087|ref|ZP_06901128.1| serine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
 gi|296431948|gb|EFH17754.1| serine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
          Length = 446

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 186 FYKGLGARLERAIYNFMLDEHGKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELSDTN 245

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 246 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 302

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E        +      I  +L L    +   +G +G   +     E  +
Sbjct: 303 KVEMVKFSKPEESYDELEKMVVN-AENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 361

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 362 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 392


>gi|73949320|ref|XP_857466.1| PREDICTED: similar to Histidyl-tRNA synthetase (Histidine--tRNA
           ligase) (HisRS) isoform 3 [Canis familiaris]
          Length = 404

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/408 (11%), Positives = 108/408 (26%), Gaps = 25/408 (6%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
               + V  +I     R GA  +  P  +  +    +G+Y    K +  L D+  + +  
Sbjct: 1   MAVREKVFDVIISCFKRHGAEVIDTPVFELKETL--TGKYGEDSKLIYDLKDQGGELLSL 58

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
                            +   L         K      P     R REF           
Sbjct: 59  RYDLTVPFA-----RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQ-----CVND 108

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                  +    V   +            +     +  ++  E  +  +  +      + 
Sbjct: 109 RRILDGMFAICGVPDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADHIGDYVQQ 168

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTA-----PYAATSDVHNEKLFD-SLPENKRVSAR 280
                +  +     ++      +E          Y     + ++  FD SL         
Sbjct: 169 HGGISLVEQLLQDPELSQNKQALEGLGDLKLLFEYLTLFGIADKISFDLSLARGLDYYTG 228

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
            I    +     +           A G  +   +G +     +V    +    +    I 
Sbjct: 229 VIYEAVLLQTPVQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIV 288

Query: 341 ------PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV-FWDDMGEQIGSQFA 393
                  +       + + + +  +   +   K+ + L   G           ++ +Q  
Sbjct: 289 EQRLEATEEKVRTTETQVLVASAQKKLLEERLKLVSELWNAGIKAELLYKKNPKLLNQLQ 348

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             +  G PL  I+G + + D  ++++   +    D+  E+++     R
Sbjct: 349 YCEEAGIPLVAIIGEQELKDGVIKLRSVASREEVDVPREDLVEEIKRR 396


>gi|62184722|ref|YP_219507.1| histidyl-tRNA synthetase [Chlamydophila abortus S26/3]
 gi|81313093|sp|Q5L735|SYH_CHLAB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|62147789|emb|CAH63535.1| putative histidyl-tRNA synthetase [Chlamydophila abortus S26/3]
          Length = 430

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/407 (13%), Positives = 120/407 (29%), Gaps = 14/407 (3%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLADRNDKAMI 105
                 V  +I +     G  E+  P  + +++++  G + D   KEM    D+  +++ 
Sbjct: 26  TSLWHRVEDVIHDVCGLYGFSEIRTPVFEKSEVFLHVGEQSDIVKKEMYTFLDKKGRSLT 85

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P     +   F  +  + R+    FY I   FR E +      +  +F ++       
Sbjct: 86  LRPEGTAPIVRSFIDNSMNQRD-DNKFYYILPMFRYERQQSGRYRQHHQFGVEAIGVRHP 144

Query: 166 TPEG------SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
             +                       + LG +    R +       L H   +   + E 
Sbjct: 145 LRDAEILALLWHFYSAVGLQHMQVQLNFLGGEVTRKRYDKILREYFLDHLSSLSLLSKER 204

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                   +D   P +         +   V      Y        + L  +   N R+  
Sbjct: 205 FNTNLLRILDSKEPEDQEIIQSAPPILDYVSDDDRKYFDEILSALDALNIAYDINPRL-V 263

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG++      F    +     ++    G  +   + S G  A       I      + ++
Sbjct: 264 RGLDYYTDLVFEAITTCRDH-SYALGGGGRYDGLIASSGGPATPACGFGIGLERVIQTLL 322

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS--QFAVADL 397
              +  P     + +   +      C      L  +G     D   +++ +  + A A+ 
Sbjct: 323 AQGNFTPLSSHKLRLIPVESQADSFCFVWAQHLRSLGIPTEVDWTHKKLKNALKIADAE- 381

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
                   VG + +   ++ +K+         S +EV     +   N
Sbjct: 382 -KATFVCPVGERELVSEQLTVKNMSLRQEFSGSKQEVEQRLLYEIQN 427


>gi|125623578|ref|YP_001032061.1| seryl-tRNA synthetase [Lactococcus lactis subsp. cremoris MG1363]
 gi|166222737|sp|A2RJ76|SYS_LACLM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|124492386|emb|CAL97327.1| SerS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070342|gb|ADJ59742.1| seryl-tRNA synthetase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 423

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 11/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +   G +    +   + +E  + G  EM  P + + +    +G+Y  + ++   L D  
Sbjct: 165 FYKGAGARLERALYNFMLDEHGKEGYTEMITPYMVNQESMFGTGQYPKFKEDTFELKDDR 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I     LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 G--FVLIPTAEVPLTNYYRGEILDGSELPIKFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +           +   I  +LGL    +   +G +G   +     E  +
Sbjct: 283 KVEMVKFAKPDQSYDELEKMT-ANAENILQKLGLAYRVVALSTGDMGFSAAKTYDLEVWI 341

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 342 PAQNTYREISSCSNCEDFQARRAQIRYRD 370


>gi|332359167|gb|EGJ36988.1| serine--tRNA ligase [Streptococcus sanguinis SK49]
          Length = 425

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 92/260 (35%), Gaps = 21/260 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYIVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILKKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD----IISLNSIVEQWTAPYAAT-----SDVH 263
            A     ++    +  DF        + D     + L   +         T      +  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEADGKVKLLHTLNGSGLAVGRTVAAILENYQ 400

Query: 264 NEKLFDSLPENKRVSARGIE 283
           NE    ++PE  R    G+E
Sbjct: 401 NEDGSVTIPEVLRPYMGGLE 420


>gi|327472776|gb|EGF18203.1| serine--tRNA ligase [Streptococcus sanguinis SK408]
          Length = 425

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 75/211 (35%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DTNFVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|261379054|ref|ZP_05983627.1| histidine--tRNA ligase [Neisseria cinerea ATCC 14685]
 gi|269144510|gb|EEZ70928.1| histidine--tRNA ligase [Neisseria cinerea ATCC 14685]
          Length = 431

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 58/434 (13%), Positives = 114/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVNRWTRAYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEDKLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR-LTGIR 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K    T  +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGTHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++ E++      
Sbjct: 414 QTVAAEDLTPTLQQ 427


>gi|288800883|ref|ZP_06406340.1| histidine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332344|gb|EFC70825.1| histidine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 453

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 5/128 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  GI  + +             +      +  +  ++ I   ++   D C  I  +L 
Sbjct: 329 FGMPGISGVGISFGADRIYDVLNTLDLYPRESAEQTQILFINFGEEEV-DYCLPIATQLR 387

Query: 374 KVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G   +VF D    ++  Q   A+    P  VI G   + + K+ +K+ LTG +  ++ 
Sbjct: 388 TNGVFTEVFPD--NTKMKKQMNYANAKQIPFVVIAGENEIKEGKLTLKNMLTGEQSLLTK 445

Query: 432 EEVINYAS 439
           EE+I    
Sbjct: 446 EELIAKFQ 453


>gi|225077178|ref|ZP_03720377.1| hypothetical protein NEIFLAOT_02233 [Neisseria flavescens
           NRL30031/H210]
 gi|224951526|gb|EEG32735.1| hypothetical protein NEIFLAOT_02233 [Neisseria flavescens
           NRL30031/H210]
          Length = 431

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/434 (12%), Positives = 112/434 (25%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVNLWTRAYGYRQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            R    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QRG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTHYEAQLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYVENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++   +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVGEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IR 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMQGKHEQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++  ++ +    
Sbjct: 414 QTVAAADLTDTLQQ 427


>gi|15673694|ref|NP_267868.1| seryl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|281492294|ref|YP_003354274.1| seryl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|30173210|sp|Q9CEX2|SYS_LACLA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|12724729|gb|AAK05810.1|AE006401_11 seryl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|281375958|gb|ADA65449.1| Seryl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|326407178|gb|ADZ64249.1| seryl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56]
          Length = 423

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 88/259 (33%), Gaps = 19/259 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +   G +    +   + +E  + G  EM  P + + +    +G+Y  + ++   L D  
Sbjct: 165 FYKGAGARLERALYNFMLDEHGKEGYTEMITPYMVNQESMFGTGQYPKFKEDTFELKDDR 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I     LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 G--FVLIPTAEVPLTNYYRGEILDGAELPIKFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +           +   I  +LGL    +   +G +G   +     E  +
Sbjct: 283 KVEMVKFAKPDQSYDELEKMT-ANAENILQKLGLAYRVVALSTGDMGFSAAKTYDLEVWI 341

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD---IISLNSIVEQWTAPYAAT-----SDVHN 264
            A     ++    +  DF        + D    + L   +         T      +  N
Sbjct: 342 PAQNTYREISSCSNCEDFQARRAQIRYRDEEGKVQLLHTLNGSGLAVGRTVAAILENYQN 401

Query: 265 EKLFDSLPENKRVSARGIE 283
           E    ++PE  R    G+E
Sbjct: 402 EDGSITVPEVLRPYMGGLE 420


>gi|332364654|gb|EGJ42423.1| serine--tRNA ligase [Streptococcus sanguinis SK1059]
          Length = 425

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|325695149|gb|EGD37050.1| serine--tRNA ligase [Streptococcus sanguinis SK150]
          Length = 425

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 92/260 (35%), Gaps = 21/260 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD----IISLNSIVEQWTAPYAAT-----SDVH 263
            A     ++    +  DF        + D     + L   +         T      +  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEADGKVKLLHTLNGSGLAVGRTVAAILENYQ 400

Query: 264 NEKLFDSLPENKRVSARGIE 283
           NE    ++PE  R    G+E
Sbjct: 401 NEDGSVTIPEVLRPYMGGLE 420


>gi|294628353|ref|ZP_06706913.1| histidyl-tRNA synthetase [Streptomyces sp. e14]
 gi|292831686|gb|EFF90035.1| histidyl-tRNA synthetase [Streptomyces sp. e14]
          Length = 420

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/420 (13%), Positives = 118/420 (28%), Gaps = 24/420 (5%)

Query: 38  GIYSWLP----LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           G Y  +P          + + A +R     +G   +  P  ++ +L+        D   K
Sbjct: 9   GTYDLIPPDSAKFLAVREAIAAPLR----NSGYGYIETPGFENVELFARGVGESTDIVTK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM     +    +   P     +             NLP   +     +R E   +    
Sbjct: 65  EMYAFETKGGDKLALRPEGTASVLRAALEANLHKAGNLPVKLWYSGSYYRYERPQKG--- 121

Query: 151 RSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLS 207
           R R F    A       P            +Y  +  R     +    +    PI     
Sbjct: 122 RYRHFSQVGAEAIGAEDPALDAELIILADQAYRSLGLRNFRILLNSLGDKECRPIYRAAL 181

Query: 208 HEFIVLADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
            +F+   D  E      ++   +   D     +    D  +  + + +   A +    ++
Sbjct: 182 QDFLRGLDLDEDTLRRAEINPLRVLDDKRPDVQKQLTDAPLLRDYLCDGCKAYHEEVREL 241

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                     + K V          F F        SA   G  G+   +     G    
Sbjct: 242 ITAAGVSFEDDPKLVRGLDYYTRTTFEFVHDGLGSQSA--VGGGGRYDGLSEMIGGPALP 299

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V  A+               +     + +      +  R         L K G    + 
Sbjct: 300 SVGWALGVDRTVLALEAEGVELQLPATTSVFAVPLGEEARRVLFAKVTELRKNGVAADFS 359

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             G+ + +    A+  G    +++G + +++  V++K   +G +  + + E++     R 
Sbjct: 360 YGGKGLKAAMKAANRSGARYALVMGERDLAEGVVQLKDMESGEQVAIGVNEIVAELESRL 419


>gi|228476564|ref|ZP_04061246.1| seryl-tRNA synthetase [Streptococcus salivarius SK126]
 gi|228251759|gb|EEK10824.1| seryl-tRNA synthetase [Streptococcus salivarius SK126]
          Length = 425

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 74/211 (35%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K    +   + +E  + G  EM  P + + D    +G+Y  + ++     + +
Sbjct: 165 FYKGLGAKLERAIYNFMLDEHAKEGYTEMITPYMVNHDSMFGTGQYPKFKED---TFELD 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 GTDYVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +        +      I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFSKPEDSYDELEKMVVN-AENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|116512562|ref|YP_811469.1| seryl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
 gi|123025253|sp|Q02XG6|SYS_LACLS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116108216|gb|ABJ73356.1| seryl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
          Length = 423

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 11/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +   G +    +   + +E  + G  EM  P + + +    +G+Y  + ++   L D  
Sbjct: 165 FYKGAGARLERALYNFMLDEHGKEGYTEMITPYMVNQESMFGTGQYPKFKEDTFELKDDR 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I     LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 G--FVLIPTAEVPLTNYYRGEILDGSELPIKFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +           +   I  +LGL    +   +G +G   +     E  +
Sbjct: 283 KVEMVKFAKPDQSYDELEKMT-ANAENILQKLGLAYRVVALSTGDMGFSAAKTYDLEVWI 341

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 342 PAQNTYREISSCSNCEDFQARRAQIRYRD 370


>gi|42782401|ref|NP_979648.1| histidyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|54039677|sp|P62367|SYH1_BACC1 RecName: Full=Histidyl-tRNA synthetase 1; AltName:
           Full=Histidine--tRNA ligase 1; Short=HisRS 1
 gi|42738326|gb|AAS42256.1| histidyl-tRNA synthetase [Bacillus cereus ATCC 10987]
          Length = 436

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 61/421 (14%), Positives = 127/421 (30%), Gaps = 33/421 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRNLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ES  I  + + + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILESINIPTERTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPY---AATSD 261
            D  E          V       +      NT    +  ++    E +  P         
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADFKEAFNNPLVADGVNEL 245

Query: 262 VHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++   +L  N+         RG+ +     +          +  G+ G+   +    
Sbjct: 246 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAF 305

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV- 375
            G         +          +           +  I    ++    C +I  +L    
Sbjct: 306 RGDNMNYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGTELQ---CLQIAQQLRSTT 362

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V  +  G ++      A+    P  +I+G   +S   V +++   G    + L  + 
Sbjct: 363 SLKVELELAGRKLKRALNYANKENIPYVLIIGEDELSTETVVLRNMKEGSEVKVPLSSLK 422

Query: 436 N 436
           +
Sbjct: 423 D 423


>gi|262283251|ref|ZP_06061018.1| seryl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
 gi|262261503|gb|EEY80202.1| seryl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
          Length = 425

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 92/260 (35%), Gaps = 21/260 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD----IISLNSIVEQWTAPYAAT-----SDVH 263
            A     ++    +  DF        + D     + L   +         T      +  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEADGKVKLLHTLNGSGLAVGRTVAAILENYQ 400

Query: 264 NEKLFDSLPENKRVSARGIE 283
           NE    ++PE  R    G+E
Sbjct: 401 NEDGSVTIPEVLRPYMGGLE 420


>gi|52142218|ref|YP_084611.1| histidyl-tRNA synthetase [Bacillus cereus E33L]
 gi|81687158|sp|Q638Q6|SYH1_BACCZ RecName: Full=Histidyl-tRNA synthetase 1; AltName:
           Full=Histidine--tRNA ligase 1; Short=HisRS 1
 gi|51975687|gb|AAU17237.1| histidine--tRNA ligase (histidyl-tRNA synthetase) [Bacillus cereus
           E33L]
          Length = 425

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 62/423 (14%), Positives = 129/423 (30%), Gaps = 33/423 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKSLETPTLNMYELMSYKYGGGDEILKEIYTLRDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRELALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ES  I  + + + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILESINIPTERTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPY---AATSD 261
            D  E          V       +      NT    +  S++   + +  P         
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLSIDDFKDAFNTPLVAEGVNEL 245

Query: 262 VHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++   +L  N+         RG+ +     +          +  G+ G+   +    
Sbjct: 246 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAF 305

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV- 375
            G         +          +           +  I    ++    C +I  +L    
Sbjct: 306 RGDNMNYPTVGISFGLDVIYTALSQKETISSTADIFIIPIGTELQ---CLQIAQQLRSTT 362

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V  +  G ++      A+    P  +I+G + +S     +++   G    + L  + 
Sbjct: 363 SLKVELELTGRKLKRALNYANKENIPYVLIIGEEELSTETAMLRNMKEGSEVKVPLSSLS 422

Query: 436 NYA 438
           NY 
Sbjct: 423 NYL 425


>gi|194246664|ref|YP_002004303.1| histidyl-tRNA synthetase [Candidatus Phytoplasma mali]
 gi|254782340|sp|B3QZS0|SYH_PHYMT RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|193807021|emb|CAP18457.1| Histidyl-tRNA synthetase [Candidatus Phytoplasma mali]
          Length = 423

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/413 (11%), Positives = 111/413 (26%), Gaps = 29/413 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLADRNDKAMIYGP 108
              +   ++        +E+  P ++  +++  +    D   KE+    D+  + +   P
Sbjct: 20  WQELEKKVKFFFENYNYLEIRTPIIEYNEIFNRTATHSDMVNKEIYNFYDKKGRLIALRP 79

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTP 167
                +   +  +   +      FY +   FR E   +    R R+F         D TP
Sbjct: 80  EGTAGVVRSYIENKLDFNENLNKFYYLGSFFRYERPQKG---RYRQFHQIGVEVLGDNTP 136

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADT------GET 219
                    +    + +  +     I    +  S      + +++I   D        E 
Sbjct: 137 FLDLEVIATVSEMLIFLGLKDFKIIINTLGDESSYKKYIKVFNDYIKKQDIFLCSLCKER 196

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP------YAATSDVHNEKLFDSLPE 273
               S   +D    ++      +  +   +  ++                N ++   L  
Sbjct: 197 LKKNSLRILDCKTCAQKNFLKSVPLITDYLNDFSKQRFDSVIKGLKFMKINFQICPHLVR 256

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
                        +F               G  G    +     G     +  A+     
Sbjct: 257 GLDY-----YNHTVFEIILNSDSIGKRNSLGGGGCYDRLVEILGGHKTSGIGFALGTERL 311

Query: 334 DGKGIIWPD-SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQF 392
                 +     +      +     D         +  +L   G     +        Q 
Sbjct: 312 ISVLKKYDLLEYSNNNQIDVYFLFLDSKLFFKSLFLVNQLRNAGIKTEINYRFLPFLKQL 371

Query: 393 AVADLLGFP--LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             A  L +     VI+G K   ++++ IK+ +   ++ +S  E+I +      
Sbjct: 372 KKA--LKYNPKYFVILGEKEDKNNEISIKNTINQNQKKLSQLEMIKFLKKELD 422


>gi|327467137|gb|EGF12647.1| serine--tRNA ligase [Streptococcus sanguinis SK330]
          Length = 425

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|323341530|ref|ZP_08081769.1| serine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
 gi|323091051|gb|EFZ33684.1| serine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
          Length = 424

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 79/219 (36%), Gaps = 12/219 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +  LG +    V   + +E  + G  EM  P + +A     +G++  + +++ ++  
Sbjct: 163 FVYYKGLGARLERAVYNFMLDEHAKEGYTEMLPPYIVNAQTMYGTGQFPKFKEDVYQV-- 220

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N + M   PT E  +T+ +R  +     LP  F  +   FR E     R   G++R  +
Sbjct: 221 -NGEDMTLIPTAEVPLTNYYRDEVIPTEKLPVYFTALTPCFRSEAGSAGRDTRGLIRMHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F                +   I  +LGL    +   +G +G   +     E 
Sbjct: 280 FNKVEMVKFSKPENSYDELEKMT-QNAGNIMEKLGLPYHVITLSTGDMGFSAAMTHDLEV 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            + A     ++    +  DF     +  + D     + V
Sbjct: 339 WMPAQNKYREISSCSNCEDFQARRAHIQYRDENGKLNFV 377


>gi|329116627|ref|ZP_08245344.1| serine--tRNA ligase [Streptococcus parauberis NCFD 2020]
 gi|326907032|gb|EGE53946.1| serine--tRNA ligase [Streptococcus parauberis NCFD 2020]
          Length = 425

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 76/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++   L D N
Sbjct: 165 FYKNLGARLERAIYNFMLDEHGKEGYQEIITPYMVNHDSMFGTGQYPKFKEDTFELKDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRGEILEGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVITLCTGDMGFSAAKTYDIEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|73667326|ref|YP_303342.1| histidyl-tRNA synthetase [Ehrlichia canis str. Jake]
 gi|83305869|sp|Q3YRB1|SYH_EHRCJ RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|72394467|gb|AAZ68744.1| histidyl-tRNA synthetase [Ehrlichia canis str. Jake]
          Length = 413

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/406 (11%), Positives = 117/406 (28%), Gaps = 28/406 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +  + +   NR G I +  P ++  +++ ++     D   KEM    D++ + +   
Sbjct: 23  FQYIQHLSQAIANRYGFIAVDTPIIEFTEVFTKTLGDDSDIVTKEMYNFQDKSGENITLR 82

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT- 166
           P     +  +  +        P   +     FR E   +    R R+F   +   F    
Sbjct: 83  PEFTSAIVRLLINKNL---VTPVKLFSSGPVFRYERPQKC---RQRQFHQVNFEFFGSDS 136

Query: 167 ---PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                        +      + +     +     E+         E++      +     
Sbjct: 137 PLADVEMIALGYNILSELKLLNNITLEINFLGDKETMNSYRLSLVEYLNKY-KKDLSGDS 195

Query: 224 SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE 283
            +  +  P+   ++   +   +          Y   S     ++ D L +        + 
Sbjct: 196 QRRLITNPLRVLDSKSPEDCEILLNAPNIGDFYTKYSSDFFTEVLDGLND--LCIPYQLN 253

Query: 284 VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
              +       +     T     G  + V  G    G +R +      +      I   S
Sbjct: 254 NRIVRGLDYYCNTVFEFT-TSELGSQNAVIAGGRYDGLVRSMGGNDTPAVGFAMGIERVS 312

Query: 344 ----VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG---EQIGSQFAVAD 396
                   +   + +    +       K+   L   G  V W+      + +  +     
Sbjct: 313 ALIDYEHKESRNVVLVPIGKDAMSYALKLAYELRCKGISVGWNYKNTGLKNMLRKINDNS 372

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
                + +I G + +  + V++K   TG ++++    +++   ++ 
Sbjct: 373 -----IVLIFGDEELKSNTVQVKDMKTGEQQEVEKGNLLDALYNKI 413


>gi|86604971|ref|YP_473734.1| seryl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
 gi|123507911|sp|Q2JXL1|SYS_SYNJA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|86553513|gb|ABC98471.1| seryl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 435

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 71/206 (34%), Gaps = 12/206 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      + A++ E     G  E+  P L ++     +G+   +  E  R AD     + 
Sbjct: 174 GAALERALIAMMLERHIAAGYTEVIPPFLVNSAALEGTGQLPKFAAESFRCAD---DDLW 230

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  +     LP  F      FR E     R   G++R  +F  K   
Sbjct: 231 LIPTAEVPLTNLYREEVIPAERLPLYFCAYTPCFRREAGSYGRDTKGLIRLHQF-QKVEL 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                P  S+  + K+      I   L L    +   +G +G   +     E    +   
Sbjct: 290 VKVTHPTQSEAEHEKLVQDAEAILQMLELPYRVVELCTGDLGFSAARCFDLEVWFPSQNR 349

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDII 243
             ++    +  DF     N  + +  
Sbjct: 350 YREISSCSNCWDFQARRANLRYKEAG 375


>gi|322373920|ref|ZP_08048455.1| serine--tRNA ligase [Streptococcus sp. C150]
 gi|321277292|gb|EFX54362.1| serine--tRNA ligase [Streptococcus sp. C150]
          Length = 425

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 73/211 (34%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K    +   + +E  + G  EM  P + + D    +G+Y  + ++     + +
Sbjct: 165 FYKGLGAKLERAIYNFMLDEHAKEGYTEMITPYMVNHDSMFGTGQYPKFKED---TFELD 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 GTDYVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F             +      I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFSKPESSYDELEKMVVN-AENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|312277730|gb|ADQ62387.1| Seryl-tRNA synthetase [Streptococcus thermophilus ND03]
          Length = 425

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 74/211 (35%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  EM  P + + D    +G+Y  + ++     + +
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEMITPYMVNHDSMFGTGQYPKFKED---TFELD 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 GTDYVLIPTAEVPLTNYYRGEILDGKELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +        +      I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFSKPEDSYDELEKMVVN-AENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|297181088|gb|ADI17287.1| histidyl-tRNA synthetase [uncultured alpha proteobacterium
           HF0070_17D04]
          Length = 463

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 128/423 (30%), Gaps = 35/423 (8%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGK 91
           Q ++G    +P        V    R      G  EM+ P  + A+++        D   K
Sbjct: 48  QPARGTTDLMPAAMAGHQRVIGTARAAAGLYGFQEMATPMFEFAEVFSRPLGDSSDVVTK 107

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           E     DR  + +   P +   +     S+  + ++LP  F+     FR E   +    R
Sbjct: 108 ETYNFTDRGGETLTLRPENTAGVVRAMISNGLT-QSLPLKFFYAGPMFRYERPQKG---R 163

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI----FHRLGLKSIPMRAESGPIGGDLS 207
            R+F              +           L             +    +ES        
Sbjct: 164 MRQFHQIGIEYLGPRDGLADAEIIGCGARILDDLGVLDLCTLRLNSLGDSESRQAYRAAL 223

Query: 208 HEFIVLAD------------TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            +F+   +            +   ++  SKD  D  I +E    D  ++ +     + + 
Sbjct: 224 IDFLNAHEADLSEDSRTRLTSNPLRILDSKDAGDRAIIAEAPRLDAFLN-DGSRRHFDSV 282

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             A         FD L     V          F F T  +L    T  G    D   +M 
Sbjct: 283 TGALDGAGISWSFDPL----LVRGLDYYCHTAFEFITD-ALGAQGTVLGGGRYDGLSEML 337

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
                     AA +E      G + P +     + +      D     A   +   L   
Sbjct: 338 GGPPVPGVGWAAGVERLAMLVGNVEPAAPRVAVMPM------DGDAEGAAFALAESLRGA 391

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V     G  IG +    D  G  + VI+GS  V+ S  +I+    G ++++   E+ 
Sbjct: 392 GIAVDL-PAGGAIGKRLKKVDRAGVRIAVILGSDEVAGSSAQIRDLGAGTQQEVPQAELA 450

Query: 436 NYA 438
           +  
Sbjct: 451 SVL 453


>gi|15827170|ref|NP_301433.1| histidyl-tRNA synthetase [Mycobacterium leprae TN]
 gi|221229648|ref|YP_002503064.1| histidyl-tRNA synthetase [Mycobacterium leprae Br4923]
 gi|13432210|sp|P46696|SYH_MYCLE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|3136015|emb|CAA19087.1| histidyl-tRNA synthetase [Mycobacterium leprae]
 gi|13092718|emb|CAC30002.1| histidyl-tRNA synthase [Mycobacterium leprae]
 gi|219932755|emb|CAR70587.1| histidyl-tRNA synthase [Mycobacterium leprae Br4923]
          Length = 427

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 58/399 (14%), Positives = 115/399 (28%), Gaps = 29/399 (7%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            R G  ++ +P  +   L+        D   KEM   ADR D+++   P     +     
Sbjct: 39  RRAGYGDIELPVFEDTALFARGVGESTDVVAKEMYTFADRGDRSVTLRPEGTAGVVRAVI 98

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            H      LP         FR E        + ++  ++        P            
Sbjct: 99  EHGLDRGALPVKLCYAGPFFRYERPQAGRCRQLQQVGVEA--IGVDDPALDAEVITIADA 156

Query: 180 SYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCSK----DFMDFPIP 233
            +  +        I    +    P    L  EF++  D  E     ++      +D   P
Sbjct: 157 GFRSLGLDGFQLEITSLGDGTCRPQYRKLLQEFLLQLDLDEDTRRRAELNPLRVLDDKRP 216

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFY-- 289
                      L   +      +  T   H + L      N R+  RG++      F   
Sbjct: 217 QVQAMTAAAPVLLDHLSDGAKQHFDTVLAHLDALRVPYVINPRM-VRGLDYYTKTTFEFV 275

Query: 290 ---FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               G +  +     + G   +     +   G G       +   +          +V  
Sbjct: 276 HPGLGAQSGIGGGGRYDGLMRQLGGQDLSGIGFGLGVDRTLLALHA-------EGKTVGE 328

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDV--FWDDMGEQIGSQFAVADLLGFPLQV 404
                +   +  +  +     +  +L   G  V   + D G + G+    A   G  + +
Sbjct: 329 TTRCDVFGVSLGEAAKLKVAMLAGQLRAAGVRVDLIYGDRGIR-GAM-RAAGRSGARIAL 386

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           IV    +    V ++   TG +  ++++ V+     R +
Sbjct: 387 IVDDCAIKADGVGVRDLATGEQISVAVDSVVAEVISRIA 425


>gi|229134174|ref|ZP_04262992.1| Histidyl-tRNA synthetase 1 [Bacillus cereus BDRD-ST196]
 gi|228649282|gb|EEL05299.1| Histidyl-tRNA synthetase 1 [Bacillus cereus BDRD-ST196]
          Length = 431

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 131/422 (31%), Gaps = 35/422 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   DL   + G  D   KE+  L D+
Sbjct: 12  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYDLMSYKYGGGDEILKEIYTLKDQ 71

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 72  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 126

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 127 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILQAINIPTELTSDVILS 186

Query: 214 ADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            D  E        KD ++  I  E  D      L+ +              +N  + D +
Sbjct: 187 LDKIEKIGIDGVRKDVLERGITVEMADTICTTVLSCLKLTIADF---KETFNNPLVADGV 243

Query: 272 PENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            E +++       GI    IF       L M                 S G G  R    
Sbjct: 244 DELQQLQQYLRALGINENTIFNPFLARGLTMYTGTVYEIFLTDASITSSIGSGG-RYDNI 302

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLSKV 375
           +     D              +    +   + +   A            C +I  +L   
Sbjct: 303 IGAFRGDNMNYPTVGISFGLDVIYTALSQKETISSTADLFIIPLGTELQCLQIAQQLRST 362

Query: 376 -GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V  +  G ++      A+    P  +I+G + +S   V +++   G    + L  +
Sbjct: 363 TSLKVELELAGRKLKRALNYANKENIPYVLIIGEEELSTETVVLRNMKEGTEVKIPLSSL 422

Query: 435 IN 436
            N
Sbjct: 423 EN 424


>gi|312862541|ref|ZP_07722783.1| serine--tRNA ligase [Streptococcus vestibularis F0396]
 gi|311101946|gb|EFQ60147.1| serine--tRNA ligase [Streptococcus vestibularis F0396]
          Length = 425

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 73/211 (34%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K    +   + +E  + G  EM  P + + D    +G+Y  + ++     + +
Sbjct: 165 FYKGLGAKLERAIYNFMLDEHAKEGYTEMITPYMVNHDSMFGTGQYPKFKED---TFELD 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 GTDYVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F             +      I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFSKPESSYDELEKMVVN-AENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|298705939|emb|CBJ29069.1| Glycyl-tRNA Synthetase [Ectocarpus siliculosus]
          Length = 1194

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 340  WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            +   VAP K ++  + +        C ++   L K+      D  G  +G ++A  D LG
Sbjct: 1030 FRPLVAPIKCAVFPLSSQ-AAFFPLCGRVMDALGKMHLSAKMDASGAALGRRYARMDELG 1088

Query: 400  FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             P  V V  + V D  V ++ R +  +  M + +V
Sbjct: 1089 APFGVTVDFQTVEDETVTLRERDSMTQIRMPMPDV 1123



 Score = 44.7 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYD 87
           +  IH    G+Y   P G     N+ ++ ++      G +EM    L   ++   SG  D
Sbjct: 560 SFEIHGGVSGLYDLGPPGCGLKGNIVSLWKQHFILAEGMLEMECTNLTPENVLQTSGHVD 619

Query: 88  SYGKEMLRLADRND 101
            +   M++  +  +
Sbjct: 620 RFTDLMVKDTETGE 633


>gi|116627246|ref|YP_819865.1| seryl-tRNA synthetase [Streptococcus thermophilus LMD-9]
 gi|122268151|sp|Q03MA3|SYS_STRTD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116100523|gb|ABJ65669.1| seryl-tRNA synthetase [Streptococcus thermophilus LMD-9]
          Length = 425

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 74/211 (35%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  EM  P + + D    +G+Y  + ++     + +
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEMITPYMVNHDSMFGTGQYPKFKED---TFELD 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 GTDYVLIPTAEVPLTNYYRGEILDGKELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +        +      I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFSKPEDSYDELEKMVVN-AENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|302807263|ref|XP_002985344.1| hypothetical protein SELMODRAFT_122255 [Selaginella moellendorffii]
 gi|300146807|gb|EFJ13474.1| hypothetical protein SELMODRAFT_122255 [Selaginella moellendorffii]
          Length = 423

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 53/423 (12%), Positives = 122/423 (28%), Gaps = 29/423 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P      + + +  +E     G  E+  P ++S  L+  ++G  +   +++   
Sbjct: 8   GTRDFAPPLMLLRNWLFSHFKEVSRLFGFEEVDFPVVESEALYIRKAG--EEITQQLYNF 65

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D++ + +   P     +  +     KS    P  ++ I   +R E   +    R RE  
Sbjct: 66  EDKSGRRLCLRPEITPSIARLIIQKGKS-LVFPLRWFTIGQCWRYERMTKG---RRREHY 121

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             +   F +    ++       V+            + +R  +  +   +   + V  D 
Sbjct: 122 QWNMDIFGVPGVEAEAELLAAIVTLFTSMGFT-ANDVRIRVSNRKVLQAVLDRYSVPQDK 180

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--- 273
             +                +    D+   ++ +          +    ++L  S  E   
Sbjct: 181 FNSVCVVVDKISKISKEEVDQQLMDLGLSSTAINGIRHAILLKNLDDIQELIGSSSEAFL 240

Query: 274 ---------------NKRVSARGIEVGHIFYFG---TKYSLPMSATFKGADGKDHYVQMG 315
                             V   GI  G  +Y G     +            G+   +   
Sbjct: 241 EMKKLFALSKAYGYDEWLVVDLGIVRGLSYYTGIVFEAFDTQGKFRAICGGGRYDKLISN 300

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
             G           ++           S          +   D+  R     I +RL   
Sbjct: 301 FGGPSIPACGFGFGDAVIVDLLNECNLSPVLGHEVDDVVFVLDEELRCHACNIVSRLRSA 360

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           G  V      +++   F  A  +     +++G +   +  V +K  +T    D+ + E++
Sbjct: 361 GRTVDMILENKKLKWVFNYASRIDAKRMILLGIREWEEGNVRVKDLVTREETDVKVAELV 420

Query: 436 NYA 438
              
Sbjct: 421 RMF 423


>gi|229585354|ref|YP_002843856.1| histidyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
 gi|259511959|sp|C3MZH9|SYH_SULIA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|228020404|gb|ACP55811.1| histidyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
          Length = 426

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/408 (13%), Positives = 119/408 (29%), Gaps = 17/408 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
           +  + +I R+   + G  E+  P ++   L+   G  +   + M    D+ D+ +   P 
Sbjct: 21  IRYLESIFRDLAIKYGYSEIITPVVEEFKLFALKG-GEELRETMYVFKDKADRELSLRPE 79

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR-PRFGVMRSREFLMKDAYSFDLTPE 168
               +   +  +++S       FY   +   DE +  R+   R     M    S     E
Sbjct: 80  ITPSVARAYIQNLQSSPKPIRLFYFGTVYRYDEPQYGRYREFRQAGIEMIGDSSILADLE 139

Query: 169 GSKHSYNKMFV---SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
                YN       S   I     +       +   I  +L    + L D  +       
Sbjct: 140 VLDLLYNFYDKLNLSNDIIIKINNIGIFRKIMDKYNIEDNLQEHILHLIDKNKINEALDI 199

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF------DSLPENKRVSA 279
              +         F+ I++      +     A   +V    +         L        
Sbjct: 200 LEKNLKNKDIIDFFNKILTKKDTKLEDIESLAELEEVSRLDIKSEFLYLFRLSRILSNLN 259

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY-----GIGAMRVVAAVIESSHD 334
              ++   F  G  Y   +         +      G Y       G +   A       +
Sbjct: 260 IKFKIDLGFVRGLAYYTGLIFEVLHPSVQFSIAGGGRYDKLIELYGGLPSPAIGFAIGVE 319

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
              ++  D      +++I I   +         +   L K    V  +   + +      
Sbjct: 320 RTLLVIKDLKVEEPVNVIVIGMSEDTIPSM-FMVSRILRKEEYKVVINTKDQPLSKLLPY 378

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               GF + +I+G + +  + + +++ +T  +  + LE + +      
Sbjct: 379 YASQGFKVAIIIGKQELEKNMITVRNLITRKQISVPLENIEDAIKQTL 426


>gi|311746112|ref|ZP_07719897.1| histidine--tRNA ligase [Algoriphagus sp. PR1]
 gi|126576332|gb|EAZ80610.1| histidine--tRNA ligase [Algoriphagus sp. PR1]
          Length = 455

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 71/456 (15%), Positives = 131/456 (28%), Gaps = 65/456 (14%)

Query: 43  LPLGQK-------ALDN-VNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           LP G +       A  N +   I++     G  ++  P +++  L   +G+Y   G ++L
Sbjct: 6   LPKGTRDFGPVKMARRNFILNTIKDTFQLFGYQQIETPAMEN--LNTLTGKYGDEGDQLL 63

Query: 95  RLADRNDKAMIYGPT----HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
                +   +    +       + T    S      +L   F +  +  R+EL   F   
Sbjct: 64  FKILNSGDFLKKVESKDIEAGPLATLPKVSEKGLRYDLTVPFARFVVMNRNELTFPFKRF 123

Query: 151 --------------RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR 196
                         R REF   DA          +       +   R+F +L L    ++
Sbjct: 124 QIQPVWRADRPQKGRYREFYQCDADVVGTDSLVCEAEI---ILMIRRVFSQLKLNDYDIK 180

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
             +  I      E I  A                       +  +    +  VE+     
Sbjct: 181 VNNRKILT-GISEAIGEAGKEAPLCVAIDKMDKIGWEKVKIELAERGFADQSVEKLEPLV 239

Query: 257 AATSDVHNE----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
              +D+  +    K F +  E        +E   I   G   +      F     +    
Sbjct: 240 NLDTDLEGKISFLKEFLASSEVGLKGVAELEE-MIIILGQMGANLDHVDFDILLARGLSY 298

Query: 313 QMGSY------------GIGAMRV----------------VAAVIESSHDGKGIIWPDSV 344
             G+               G  R                  +  ++  +D    +     
Sbjct: 299 YTGAIFEVKVNGVSIGSVSGGGRYDNLTGVFGLEGVSGVGFSFGVDRLYDVLEELDLFPA 358

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
                + I +   DQ   D    +  +L   G          +I  QF  A   G P   
Sbjct: 359 ESLDGTQILLIHFDQKGLDYALSVLPKLRNAGIKAEIYPDSAKIKKQFDYATKKGIPFVG 418

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           I G   + +  + +K+  +G +E MS+E+VI+    
Sbjct: 419 ICGDVEIENRMLALKNLESGNQESMSIEQVIDSVKK 454


>gi|224285368|gb|ACN40407.1| unknown [Picea sitchensis]
          Length = 740

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 76/278 (27%), Gaps = 27/278 (9%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
            +K  + + +              ++         E + LAD     +    +    P+ 
Sbjct: 430 IHKERLRFRQHLQNEMAHYAADCWDAEIECSYGWVECVGLADRSAYDLKAHTEKSAVPLV 489

Query: 234 SENTDFD----DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--KRVSARGIEVGHI 287
           +  T  +    + + +     +    +     +  E L         +  +    E    
Sbjct: 490 AHETYPEPREVEKLVITPAKRELGLAFKKNQKMIVEALEAMSEAEAMELKAHLESEGKAP 549

Query: 288 FYFGT--------KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           F   T        K  + +S   K    +     +     G  R++  + E     +   
Sbjct: 550 FQVCTLGQTVTLTKDMVSISKEIKKEHQRVFTPSVIEPSFGVGRIIYCLYEHCFYTRPSK 609

Query: 340 WPDSVAPFK---------ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
             D                  +     ++      + I   L+  G     D  G  IG 
Sbjct: 610 AGDEQYNVFSFPPLLAPIKCTVFPLVQNEKYEVTAQLISKSLTGAGISHKIDITGTSIGK 669

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           ++A  D LG P  + V S+      V I+ R +  +  
Sbjct: 670 RYARTDELGVPFAITVDSET----SVTIRERDSKEQIR 703



 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 10  ILQENPRDAEIASHKLMLR---TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTG 65
           + +E  R A   + +  L    +  I++   G+Y + P G     NV A  R+       
Sbjct: 122 MSKEAFRQAVNNTLERRLFYIPSFKIYRGVAGLYDYGPPGCAVKANVIAFWRQHYVLEEN 181

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVM 114
            +E+  P +    +   SG  D +   M++  ++           ++  
Sbjct: 182 MLEVDCPCVTPEVVLKASGHVDKFTDLMVKD-EKTGMCYRADHLLKDYC 229


>gi|268567760|ref|XP_002647866.1| C. briggsae CBR-PRS-2 protein [Caenorhabditis briggsae]
          Length = 258

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 91/263 (34%), Gaps = 50/263 (19%)

Query: 193 IPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
             ++A+SG  GG +SHE+ V +   E  V                               
Sbjct: 6   YQVQADSGIHGGHISHEYHVRSSLEEDFVDYCTQC------------------------- 40

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                  S     K+      + +  A  +E+ H F+ GTKYS  + A F+G        
Sbjct: 41  ----GTFSKEETPKMCSRCSASPQKIA-SVEIAHTFHLGTKYSEALGAKFQGKP-----F 90

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH--DQVCRDACEKIYA 370
            M  +GIG  R++ A I+        +          ++I +K      V  +      +
Sbjct: 91  YMCCFGIGVSRLLPATIDLLSVSDKALRLPRAISPFDAVIIVKKSLMSNVIVEMTSSSAS 150

Query: 371 RLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG---SKFV--SDSKVEI-----K 419
           R  K G     DD  E   G +   A+ LG P  +++     + +   +  +E+     K
Sbjct: 151 RYLKGGI--LLDDRIEMSPGKRIHEANRLGIPFIIVLANETERSLVTQEPVIEVFTTHPK 208

Query: 420 HRLTGIREDMSLEEVINYASHRF 442
                 +  M+L+  +++   + 
Sbjct: 209 SADPVDQGSMTLDRFVSFVQSQL 231


>gi|161611297|ref|YP_138864.2| seryl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|161936380|ref|YP_140747.2| seryl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
          Length = 425

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 74/211 (35%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  EM  P + + D    +G+Y  + ++     + +
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEMITPYMVNHDSMFGTGQYPKFKED---TFELD 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 GTDYVLIPTAEVPLTNYYRGEILDGKELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +        +      I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFSKPEDSYDELEKMVVN-AENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|307721019|ref|YP_003892159.1| histidyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294]
 gi|306979112|gb|ADN09147.1| histidyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294]
          Length = 404

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/381 (13%), Positives = 108/381 (28%), Gaps = 16/381 (4%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            + G   +  P L+   L+  S     D  GKEM +  D+ +  +   P     +   F 
Sbjct: 32  KKYGFHYIETPLLEETALFKRSVGESSDIVGKEMYQFIDKGENDVCLRPEGTAGVVRAFI 91

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
                       F+     FR E   +    R REF      SF +       +   M  
Sbjct: 92  QKKLDKAGGIHRFFYYGPMFRYERPQKG---RLREFHQFGVESFGVASVYEDAAMIMMVA 148

Query: 180 SYLRIFHRLGLKSIPMRAESGPI--GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             L+         +    ++  +    D    FI   +    +  C +     PI   + 
Sbjct: 149 DILKKLGIGYRLQLNSLGDNNCMPQYRDSLVSFIESVEEQICED-CKRRKSTNPIRVLDC 207

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
             +    L     +         +   +KL   L +N    +  I+   +      YS  
Sbjct: 208 KNEKCQFLYENAPKLINSLCEGCESDFDKLKKILDDND--ISYEIDTNLVRGL-DYYSKT 264

Query: 298 MSATFKGADGKDHYVQMGSY----GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                    G    +  G                 +  +   + ++   ++         
Sbjct: 265 AFEFVSDNIGSQSAIAGGGRYDRLVEFLDGRPTPAVGFAMGIERLLELIAMPEESREGYY 324

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           + A D+   D    +  +          D   + + +    AD +      ++G+  +++
Sbjct: 325 LGAMDEEAVDTIVSLTHKKRAAD-KAVCDYKAKNLKNHLKSADKVNAKYCCVIGTNEMNE 383

Query: 414 SKVEIKHRLTGIREDMSLEEV 434
             + +K+  +     +  E+ 
Sbjct: 384 GTIWVKNLESKTELTIKREDF 404


>gi|89898735|ref|YP_515845.1| histidyl-tRNA synthetase [Chlamydophila felis Fe/C-56]
 gi|123735901|sp|Q252T8|SYH_CHLFF RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|89332107|dbj|BAE81700.1| histidyl tRNA synthetase [Chlamydophila felis Fe/C-56]
          Length = 430

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 52/406 (12%), Positives = 117/406 (28%), Gaps = 12/406 (2%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLADRNDKAMI 105
                 V  +I E  +  G  E+  P  + +++++ +G + D   KEM    D+  +++ 
Sbjct: 26  TSLWHRVEDVIHEVCDLYGFSEVRTPVFEKSEVFLHAGEQSDIVKKEMYTFLDKKGRSLT 85

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P     +   F  +  + R+    FY I   FR E +      +  +F ++       
Sbjct: 86  LRPEGTAPIVRSFIDNSMNQRD-DNKFYYILPMFRYERQQSGRYRQHHQFGLEAIGVRHP 144

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA-------DTGE 218
             +    S    F S + +       +      +      +  E+ +             
Sbjct: 145 LRDAEVLSLLWNFYSAVGLQGMQIQLNFLGGGTTRQRYDKVLREYFLEHFESLSSLSKER 204

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                 +         +         L  I ++    +       N          K V 
Sbjct: 205 FNTNLLRILDSKETEDQEIIKSAPSILEYISDEDQKYFDEILTALNSLDIPHSINPKLV- 263

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RG++      F    +    +   G  G+   +   S G          +      + +
Sbjct: 264 -RGLDYYTDVVFEAITTFGGHSYALGGGGRYDGLVAASGGPSTP-ACGFGVGLERVMQTL 321

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
           +   ++       + +   +      C      L  +G     D   +++ +    AD  
Sbjct: 322 LAQGNITLPSSHKLRLIPVESQADSFCFIWAQHLRGLGIPTEIDWTHKKLKNALKTADAE 381

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
                 +VG + +   ++ IK   +      S +EV     +   N
Sbjct: 382 KATFVCLVGERELLSEQLTIKDMSSRQEFSGSKQEVEQRLLYEIQN 427


>gi|298368461|ref|ZP_06979779.1| histidine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282464|gb|EFI23951.1| histidine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 431

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 58/430 (13%), Positives = 111/430 (25%), Gaps = 31/430 (7%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P L+   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVGRWTRAYGYQQIRTPILEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D N+   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNESLSLSLRPEGTASCLRAVVEHNLLYNGPQKLWYMGPMFRRERP 125

Query: 145 P----RFGVMRSREFLMKDAYSFDLTPEGSKH--SYNKMFVSYLRIFHRLGLKSIPMRAE 198
                R       E L  +    D                  YL +            A 
Sbjct: 126 QKGRYRQFHQVGIEALGFEGPDVDAEIIAMSADLWDKLGIRDYLTLEINSLGNREERAAH 185

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSK-DFMDFPIPSENTDFDDII-SLNSIVEQWTAPY 256
              +   L      + +  + ++  +    +D   P+     +     ++ + +   A Y
Sbjct: 186 RHALVDYLGRHQDKMDEDDKRRLKTNPLRVLDTKNPALQEVCNSAPRLIDYLGDASQAHY 245

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIF-----YFGTKYSLPMSATFKGADGKDHY 311
           A    + +      +   + V         +F       G + ++     + G   +   
Sbjct: 246 ARLKAMLDGLGIRYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIEELGG 305

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
               S G         ++   +          V             D             
Sbjct: 306 KPAPSIGFAMGIERLLLLVHEYGSLRADAAPDVYTVHQGEGA----DLQVMKYAR----L 357

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IREDMS 430
           L   G +V      + + +Q   AD  G    +IV    +S     +K       ++ ++
Sbjct: 358 LRDAGFNVLQHSGSQSLKAQMKKADGSGARFTLIVAQDELSSGSATLKDMQGRHSQQTVA 417

Query: 431 LEEVINYASH 440
             ++IN    
Sbjct: 418 AADLINTLQQ 427


>gi|206601609|gb|EDZ38092.1| Histidyl-tRNA synthetase [Leptospirillum sp. Group II '5-way CG']
          Length = 437

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 63/395 (15%), Positives = 106/395 (26%), Gaps = 23/395 (5%)

Query: 65  GAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G  ++ +P  +S  L+  S  G  D   KEM    D+        P     +      H 
Sbjct: 39  GFQKVLLPMFESTSLFARSIGGATDIVEKEMYTFLDKGGDQFSLRPEGTASLLRAAIEHR 98

Query: 123 KSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
               +           FR E        R R+F    A                +     
Sbjct: 99  LVDPSRIIRLAYSGPMFRHERPQAG---RLRQFTQIGAEVLGPLAPPDD---VDLLSLLH 152

Query: 183 RIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           R+     L S  +   S   P+        +V      +   C                 
Sbjct: 153 RMATDFALPSWSLLLNSLGCPLCRPAYRASLVSFLVAHSGSLCETCHRRTAQNPLRVLDC 212

Query: 241 DIISLNSIVEQ---WTAPYAATSDVHNEKLFDSLP--------ENKRVSARGIEVGHIFY 289
            + S    +E+    T      S  H E++   L          ++ V          F 
Sbjct: 213 KVPSCQETLERAPRITEHLCPKSRDHFEEVKRGLDALDIPYVLSHRLVRGLDYYTETTFE 272

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           F +      S    G        ++G   +  +   A +       +            +
Sbjct: 273 FVSDALGAQSTWAAGGRYDGLTAELGGPDVPGIGFAAGIERLWLLREKAGTLPEPERHPV 332

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++     D     A   +  RL K G        G +I S F  A+  G     I+G  
Sbjct: 333 RILVFSM-DAQGNGAALDLVRRLRKEGIPASGHFSGGKIKSAFRQAERDGALFLAILGED 391

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +    V+IK+  TG ++   L +     + R  N
Sbjct: 392 ELRQKTVQIKNLTTGEQKAWPLND-TKSIADRIRN 425


>gi|296192943|ref|XP_002744291.1| PREDICTED: probable histidyl-tRNA synthetase, mitochondrial isoform
           1 [Callithrix jacchus]
          Length = 506

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 72/484 (14%), Positives = 133/484 (27%), Gaps = 69/484 (14%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQK--------ALDNVNAIIREEQNRTGAI 67
            +A + S    L+    HQ         P G +          + +  ++     R GA 
Sbjct: 38  AEAVLTSQ---LKA---HQEKPNFIIRTPKGTRDLSPQQMVVREKILDLVVSCFKRHGAK 91

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            M  P  +  ++  E   Y      M  L D+  + +                     + 
Sbjct: 92  GMDTPAFELKEMLTEK--YGEDSGLMYDLKDQGGELLSLRYDLTVPFARYLAM----NKV 145

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL-TPEGSKHSYNKMFVSYLRIFH 186
                Y +   +R E  P     R REF   D        P        K+    L    
Sbjct: 146 KKMKRYHVGKVWRRE-SPTIVQGRYREFCQCDFDIAGQFDPMIPDAECLKIMCEILNGLQ 204

Query: 187 -------------RLGLKSIPMRAESG-------------PIGGDLSHEFIVL------- 213
                          G+ ++    ES                  D+ HE +         
Sbjct: 205 LGDFLIKVNDRRIVDGMFAVCGVPESKFRTICSSIDKLDKMAWKDVRHEMVAKKGLAPEV 264

Query: 214 ADTGETQVFCS-------KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           AD     V C        + F D  +       + +  L  + E  T    A     +  
Sbjct: 265 ADRIGDYVRCHGGESLVKQMFQDPRLSQNKQALEGLGDLKLLFEYLTLFGIAKKISFDLS 324

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKY----SLPMSATFKGADGKDHYVQMGSYGIGAM 322
           L   L     V    + +      G +     S+     + G  G     +        +
Sbjct: 325 LARGLDYYTGVIYEAVLLHTPTQAGEEPLSVGSVAAGGRYDGLVG-MFDPKGHKVPCVGL 383

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            +    I +  + +   + + V   +  ++    H     +   K+ A L   G      
Sbjct: 384 SIGVERIFNIVEQRMKTFGEKVRTTETQVLVATPHKNFLHER-LKLIAELWDAGIKAEML 442

Query: 383 DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                ++ +Q    +  G PL VIVG + + +  V+I+   +     +  E ++     R
Sbjct: 443 YKNNPKLLTQLHYCESTGIPLVVIVGEQELKEGVVKIRSVASREEVAIKRENLVAEIQKR 502

Query: 442 FSNN 445
            S +
Sbjct: 503 LSES 506


>gi|282898001|ref|ZP_06305996.1| Threonyl-tRNA synthetase [Raphidiopsis brookii D9]
 gi|281197145|gb|EFA72046.1| Threonyl-tRNA synthetase [Raphidiopsis brookii D9]
          Length = 224

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 11  LQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMS 70
            +   RD      +L L          G+  W P G      +   +++EQ + G + + 
Sbjct: 160 EEALRRDHRKIGKELGLFI-FSDPVGPGLPLWTPKGTLLRSILEDFLKKEQLKRGYLPVV 218

Query: 71  VPTL 74
            P L
Sbjct: 219 TPIL 222


>gi|218767962|ref|YP_002342474.1| histidyl-tRNA synthetase [Neisseria meningitidis Z2491]
 gi|32130148|sp|Q9JUZ9|SYH_NEIMA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|121051970|emb|CAM08279.1| putative histidyl-tRNA synthetase [Neisseria meningitidis Z2491]
          Length = 431

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 113/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVGRWTRTYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNFLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEDKLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG-IR 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGAHDQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++  ++ N    
Sbjct: 414 QTVAAADLTNTLQQ 427


>gi|298374746|ref|ZP_06984704.1| histidine--tRNA ligase [Bacteroides sp. 3_1_19]
 gi|301308429|ref|ZP_07214383.1| histidine--tRNA ligase [Bacteroides sp. 20_3]
 gi|298269114|gb|EFI10769.1| histidine--tRNA ligase [Bacteroides sp. 3_1_19]
 gi|300833899|gb|EFK64515.1| histidine--tRNA ligase [Bacteroides sp. 20_3]
          Length = 451

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 62/456 (13%), Positives = 132/456 (28%), Gaps = 72/456 (15%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSAD-------------LWVE 82
           P G +          + +   IRE  +  G  ++  P +++               L+  
Sbjct: 7   PKGTRDFSPEEMAKRNYIFNTIREVFHLYGFQQIETPAMENLSTLMGKYGEEGDKLLFKI 66

Query: 83  SGRYDSYGK-EMLRLADRNDKAMIYGPTHEEVMTDI------FRSHIKSYRNLPFTFYQI 135
               D +       L ++N          + +  D+      +    ++  + PF  YQI
Sbjct: 67  LNSGDCFAGISDEELMEKNPLRFAAKACEKGLRYDLTVPFARYVVQHRNEISFPFKRYQI 126

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           Q  +R +   +    R REF   D          ++    ++         R G++    
Sbjct: 127 QPVWRADRPQKG---RYREFYQCDGDVVGSDSLINEVELIQIMDEVFH---RFGIRVCIK 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW--- 252
                 +      E I  AD                + + N +          +E+    
Sbjct: 181 MNNRKIL--SGIAEIIGEADKIVDITVAIDKLDKIGLDNVNEELRSKGLPEEAIERLQPI 238

Query: 253 -----------------------TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                                       A  D   E++  +    +      +  G  +Y
Sbjct: 239 IMLQGSNQEKIATLKEVLSASETGLKGVAELDFILERISHTPIRAELELDLTLARGLNYY 298

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD------- 342
            G  + +       G+          +   G   V         D    +          
Sbjct: 299 TGAIFEVKALDVQIGSITGGGRYDNLTGVFGMEGVSGVGFSFGADRIFDVLNQLDLYPEG 358

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           S+   ++  +N    +++       + A++ K G          ++  Q   AD    P 
Sbjct: 359 SLKTTQLLFVNFGQKEEIHL---LPLIAKVRKAGIRTELYPEPAKMKKQMGYADAKKIPF 415

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             IVG   ++++K+ +K+ LTG +  +++EE+I   
Sbjct: 416 VAIVGENEMAENKINLKNMLTGEQTLVTIEELIERF 451


>gi|218235543|ref|YP_002368034.1| histidyl-tRNA synthetase [Bacillus cereus B4264]
 gi|218163500|gb|ACK63492.1| histidine--tRNA ligase [Bacillus cereus B4264]
          Length = 425

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 130/424 (30%), Gaps = 35/424 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRELALRYDLTIPFAKVVA--MNPNLRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++       F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEAELMGMAFELFRTLNLEITIQYNNRKLLNGILQAINIPTELTSDVILS 185

Query: 214 ADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            D  E        KD ++  I  E  D      L+ +              +N  + D +
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADF---KETFNNPLVADGV 242

Query: 272 PENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            E +++       GI    IF       L M                 S G G  R    
Sbjct: 243 NELQQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGG-RYDNI 301

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLSKV 375
           +     D              +    +   + +   A            C +I  +L   
Sbjct: 302 IGAFRGDNINYPTVGISFGLDVIYTALSQKETISSTADLFIIPLGTELQCLQIAQQLRST 361

Query: 376 -GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V  +  G ++      A+    P  +I+G   +S   V +++   G    + +  +
Sbjct: 362 TSLKVELELAGRKLKRALNYANKENIPYVLIMGEDELSTETVMLRNMKEGSEVKVPISSL 421

Query: 435 INYA 438
            +Y 
Sbjct: 422 SSYL 425


>gi|466828|gb|AAA17103.1| hisS [Mycobacterium leprae]
          Length = 427

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 58/399 (14%), Positives = 115/399 (28%), Gaps = 29/399 (7%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            R G  ++ +P  +   L+        D   KEM   ADR D+++   P     +     
Sbjct: 39  RRRGYGDIELPVFEDTALFARGVGESTDVVAKEMYTFADRGDRSVTLRPEGTAGVVRAVI 98

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            H      LP         FR E        + ++  ++        P            
Sbjct: 99  EHGLDRGALPVKLCYAGPFFRYERPQAGRCRQLQQVGVEA--IGVDDPALDAEVITIADA 156

Query: 180 SYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCSK----DFMDFPIP 233
            +  +        I    +    P    L  EF++  D  E     ++      +D   P
Sbjct: 157 GFRSLGLDGFQLEITSLGDGTCRPQYRKLLQEFLLQLDLDEDTRRRAELNPLRVLDDKRP 216

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFY-- 289
                      L   +      +  T   H + L      N R+  RG++      F   
Sbjct: 217 QVQAMTAAAPVLLDHLSDGAKQHFDTVLAHLDALRVPYVINPRM-VRGLDYYTKTTFEFV 275

Query: 290 ---FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
               G +  +     + G   +     +   G G       +   +          +V  
Sbjct: 276 HPGLGAQSGIGGGGRYDGLMRQLGGQDLSGIGFGLGVDRTLLALHA-------EGKTVGE 328

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDV--FWDDMGEQIGSQFAVADLLGFPLQV 404
                +   +  +  +     +  +L   G  V   + D G + G+    A   G  + +
Sbjct: 329 TTRCDVFGVSLGEAAKLKVAMLAGQLRAAGVRVDLIYGDRGIR-GAM-RAAGRSGARIAL 386

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           IV    +    V ++   TG +  ++++ V+     R +
Sbjct: 387 IVDDCAIKADGVGVRDLATGEQISVAVDSVVAEVISRIA 425


>gi|330444098|ref|YP_004377084.1| histidyl-tRNA synthetase [Chlamydophila pecorum E58]
 gi|328807208|gb|AEB41381.1| histidyl-tRNA synthetase [Chlamydophila pecorum E58]
          Length = 430

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/403 (12%), Positives = 116/403 (28%), Gaps = 10/403 (2%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYG 107
               +   IR+     G  E+  P  +  +++       D   KEM    D+  +++   
Sbjct: 28  LWLTIEDTIRKLCALYGFSEIRTPVFEKTEVFLHVGDHSDIVKKEMYTFLDKKGRSLTLR 87

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +   F  H   +R     FY I   FR E +      +  +F ++         
Sbjct: 88  PEGTAPVVRSFIEHTAEHRG-DNKFYYILPMFRYERQQMGRYRQHHQFGVEAIGIRHPLR 146

Query: 168 EG------SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
           +        +   N          + LG ++      +        H   +   + E   
Sbjct: 147 DAEILSLLWEFYKNVGLQCMHLQLNFLGGENTRTHYTAALRTYFKEHFSHLSPLSQERFT 206

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                 +D   P +         +   V +    Y          L      N R+  RG
Sbjct: 207 TNLLRILDSKEPEDQELIRHAPPILEYVSEVDRAYFDKILEALSNLHIPFTVNPRL-VRG 265

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           ++      F    +     T+    G  +   + + G  ++      I      + ++  
Sbjct: 266 LDYYSDLVFEAFTTFQGH-TYALGGGGRYDGLIAASGGPSLPACGFGIGLERVIQTLLAQ 324

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
             ++  K  ++ +   +      C      L  +G     +    ++ +    A      
Sbjct: 325 GGMSLKKKPMLRLLPLETEADALCFSWSQHLRSLGVPTEVEWSHRKVKAALHAASHEQVA 384

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
              I+G++ + + +  IK+  +      S  E+     +   N
Sbjct: 385 YVCIIGARELQEQQFTIKNMFSRQEFSGSQGELEQRLLYEIQN 427


>gi|316973981|gb|EFV57522.1| glycyl-tRNA synthetase [Trichinella spiralis]
          Length = 714

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 75/284 (26%), Gaps = 5/284 (1%)

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
            D      +   +     Y          +     E   I     ++    +     ++ 
Sbjct: 405 VDPNKLRFRQHMSNEMAHYATDCWDAECYTTHGWIECVGIADRSCYDLTQHSKATGVRLV 464

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             K   +           D  S+    +   A    T +  +++    L +    +   I
Sbjct: 465 AEKRLPEPRQVEMVRCVPDKRSIWLKFKADGANIIKTLENLDKEACLHLQKQFESTGHAI 524

Query: 283 EVGHIFYFGTKYSLPMSATF-KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
                  F  + ++     + K    ++    +     G  RV+ A+ E S   +     
Sbjct: 525 VDLGDKCFELENNICKIEKYMKAEHVEEIVPSVVEPSFGIGRVLYAIFEHSFRVRDNDEQ 584

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIY---ARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
            +V   +   + I     +              L         DD    IG ++A  D +
Sbjct: 585 RTVRNSEFVNLKILCKFFIFSIFPFPQSWHPDALRSKNISHKVDDSSGSIGRRYARTDEI 644

Query: 399 GFPLQVIVGSKF-VSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             P  + V     +      ++ R T  +  + L E+       
Sbjct: 645 AIPFAITVDFDSLLEPHTATLRERDTMHQVRVPLSELPTVVEDL 688



 Score = 45.1 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 25  LMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSA 77
           L+ R     Q         G+Y + P+G     N+  I R         +E+    L   
Sbjct: 111 LLKRRFFYDQSFAIYGGVTGLYDYGPVGCAMKANLLQIWRNHFIIEENMLEVDCSMLTPE 170

Query: 78  DLWVESGRYDSYGKEMLRLADRNDK 102
            + + SG  D +   M++     + 
Sbjct: 171 QVLMASGHVDRFCDYMVKDVINGEC 195


>gi|322391441|ref|ZP_08064910.1| serine--tRNA ligase [Streptococcus peroris ATCC 700780]
 gi|321145524|gb|EFX40916.1| serine--tRNA ligase [Streptococcus peroris ATCC 700780]
          Length = 424

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 79/211 (37%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K    +   + +E  + G  E+  P + + D    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGAKLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E       KM  +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYDEL-EKMVGNAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|332882047|ref|ZP_08449682.1| histidine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332679971|gb|EGJ52933.1| histidine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 454

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 2/158 (1%)

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
             G IF          S T  G    +     G  G+  + +             +    
Sbjct: 299 YTGCIFEVKALDVEIGSIT-GGGRYDNLTGIFGMPGVSGVGISFGADRIFDVLNQLDLYP 357

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
                   L+ +          C  + A+  + G          ++  Q + A+    P 
Sbjct: 358 KETVTGTELLFVNFGAAEA-AYCLPVMAQARQAGVRCEIYPDSAKMKKQMSYANAKAVPF 416

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             IVG   +++ KV +K+  TG +  ++ +E+IN    
Sbjct: 417 VAIVGENEMNEGKVTLKNMATGEQSLLTPDEMINIIKK 454


>gi|149177824|ref|ZP_01856423.1| histidyl-tRNA synthetase [Planctomyces maris DSM 8797]
 gi|148843314|gb|EDL57678.1| histidyl-tRNA synthetase [Planctomyces maris DSM 8797]
          Length = 466

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 64/439 (14%), Positives = 125/439 (28%), Gaps = 44/439 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   +LP      + +    +      G   +  P L+  ++    G  +S  +      
Sbjct: 39  GFRDYLPSAMIPREQLIETAKSVYRSYGFSPIDTPALEYTEILTGKGGTESDKQMFRFEQ 98

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
              D AM +  T                   PF  Y +   +R E   +    R REF+ 
Sbjct: 99  GGRDVAMRFDLTVPFARFAAQNIGEL---GTPFKRYHVGTVWRGERPQKG---RYREFVQ 152

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            D  +   T   +      +    +    ++G     +   +  I   L     + + + 
Sbjct: 153 CDFDTIGTTSNSADIETLFIIHDLMV---KIGFSDFTIHINNRKILNGLLESLDLQSRSA 209

Query: 218 ETQVFC---SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE--------- 265
           E         K   D  I       D        V   T    +T+++ N          
Sbjct: 210 EVLRALDKLPKIGADAVIKEMQEQGDLTQQQAEKVISLTTVEGSTAEILNSLEKQLVGNE 269

Query: 266 ----------KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
                     ++FD++ +   VS R +    I      Y+  +  TF         V  G
Sbjct: 270 CGEQGVAYLREVFDAVDKAGIVSERIVLDPSIARGLDYYTGTIYETFLNQLPGIGSVCSG 329

Query: 316 SYGIGAMRVVAAV----------IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
                   +              ++        +           ++  +   +   D  
Sbjct: 330 GRYDNLAELFTTQQLPGVGASLGLDRLLAAMQELNLLDEISTPAPILVTQMDAKYTPDY- 388

Query: 366 EKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
            +I   L   G +V    D    I  QF  A+  GF + ++ G       + ++K   TG
Sbjct: 389 LRIARDLRMYGFNVEVYPDTKA-IKKQFKYANRHGFKIVIVAGDDEFEKQEWQVKDMQTG 447

Query: 425 IREDMSLEEVINYASHRFS 443
            +  +  EE++ +     +
Sbjct: 448 TQTAVRKEELLEHIRRILA 466


>gi|91069868|gb|ABE10799.1| seryl-tRNA synthetase [uncultured Prochlorococcus marinus clone
           ASNC1363]
          Length = 425

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 69/194 (35%), Gaps = 12/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +   + +     G +E+  P L +++    SG+   +  E  + +   +  +
Sbjct: 172 NGARLERALINFMLDMHTSNGYLELMPPALVNSESLTGSGQLPKFSNESFKCS---NDDL 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T   R+ I   + LP  +      FR E     R   G++R  +F   + 
Sbjct: 229 WLSPTAEVPLTAFHRNDIIDPKKLPLKYVAYSPCFRREAGSYGRDTKGLIRLHQFNKVEL 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
           Y F    +  +            I  +L L    +   +G +G   S     E  + +  
Sbjct: 289 YWFCEPSKSIEAHKKITLD-AESILKKLNLPYRLIDICTGDLGFSSSRTYDLEVWLPSSK 347

Query: 217 GETQVFCSKDFMDF 230
              ++    + +DF
Sbjct: 348 CYREISSCSNCLDF 361


>gi|255034936|ref|YP_003085557.1| histidyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
 gi|254947692|gb|ACT92392.1| histidyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
          Length = 453

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 71/214 (33%), Gaps = 4/214 (1%)

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
           F + ++   F ++ S  S  E          +V        L   K      +  G  +Y
Sbjct: 239 FSLSADEDPFTELKSWLSESEVALKGIQELEEVWAMVKILGLENAKIEFDVTLARGLSYY 298

Query: 290 FGTKY---SLPMSATFKGADGKDHYVQMGSYGIGAMRV-VAAVIESSHDGKGIIWPDSVA 345
            G  +   +  +        G+   +       G   V ++  ++  +D    +     +
Sbjct: 299 TGAIFEVKAHHVQIGSISGGGRYDNLTGTFGVPGISGVGISLGVDRIYDVMEELNLFPDS 358

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
               + + I   D+        I  +  K G +        ++  Q   AD    P  ++
Sbjct: 359 QTTSTKVMISNFDEEAFTYGLSILPKFRKAGINSEIYPDSVKLKKQLDYADRKRIPFVIL 418

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +GS  +    + +K+  TG ++ +  E++I   +
Sbjct: 419 IGSDEIQSGLLTLKNMKTGEQQKLKAEDIITLLN 452


>gi|316961125|gb|EFV48184.1| proline--tRNA ligase [Trichinella spiralis]
          Length = 333

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 54/353 (15%), Positives = 103/353 (29%), Gaps = 66/353 (18%)

Query: 28  RTGMIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGR 85
           +  MI  +   G Y   P      + + A +  +           P   S A L  E   
Sbjct: 34  KAEMIEYYDISGCYIIRPWAFAIWEAIQAWLDRQIKLMDVANCYFPMFVSQAALEREKSH 93

Query: 86  YDSYGKEMLRLADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
              +  E+  +       M       PT E VM   F   I+S+R+LP    Q     R 
Sbjct: 94  VKGFSPEVAWVTKSGQSEMSEPVAIRPTSETVMYSSFSKWIQSHRDLPLKINQWCNIVRW 153

Query: 142 ELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           E +     +RSREFL ++ ++     + +    + +   Y R++                
Sbjct: 154 EFKHPTPFLRSREFLWQEGHTAHANKDDAVKEVHDILDLYARVYE--------------- 198

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-TAPYAATS 260
                                            E      I    +  E++  A +  T 
Sbjct: 199 ---------------------------------ELLAVPVIKGRKTDKEKFAGADFTTTI 225

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           + +              S RGI+     + G  +S      ++  + +       +    
Sbjct: 226 EAYIP-----------TSGRGIQAATSHHLGQNFSKMFDIVYEHPETQKKENVYQNSWGL 274

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
             R +        D +G++ P +VA  ++ +I       + +   + I     
Sbjct: 275 TTRSIGVFTMIHSDNQGLVLPPAVAKVQVVIIPCGITSSLDKSVVKNIQDTCQ 327


>gi|313682359|ref|YP_004060097.1| histidyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994]
 gi|313155219|gb|ADR33897.1| histidyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994]
          Length = 405

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 57/385 (14%), Positives = 104/385 (27%), Gaps = 24/385 (6%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            R G   +  P L+   L+  S     D  GKEM +  D+ D  +   P     +   F 
Sbjct: 31  KRYGFHYIETPLLEETSLFKRSVGESSDIVGKEMYQFTDKGDNDVCLRPEGTAGVVRAFV 90

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            H    +     FY     FR E   +    R REF      SF +           M  
Sbjct: 91  QHKLDKKGGIHRFYYHGPMFRYERPQKG---RLREFHQFGVESFGVDSVYEDALMIMMIA 147

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE-TQVFCSKDFMDFPIPSENTD 238
             L+         +    +   +          +   G+     C +     PI   +  
Sbjct: 148 DILKALGIGYRLKLNSLGDQHCMPAYRQKLVSFIESCGDAICADCQRRKSTNPIRVLDCK 207

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-SLP 297
            +   +L     +                FD+L         G E+      G  Y S  
Sbjct: 208 NEHCQNLYVNAPKLIDNLCEGCQSD----FDTLKTILEQHNIGYEIDTNLVRGLDYYSKT 263

Query: 298 MSATFKGADGKDHYVQMGSY----GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                    G    +  G                 +  +   + ++    +         
Sbjct: 264 AFEFVSDNIGSQSAIAGGGRYDRLIEFLDGKPTPAVGFALGIERLMELIVMPESVREGYY 323

Query: 354 IKAHDQVCRD----ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           + A D +       A EKI      V   V ++     + +    AD +      ++G  
Sbjct: 324 LGAMDALALSPVLLAAEKIRRSDKAV---VEYEPR--SLKAHLKGADRINARYCAVIGEN 378

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEV 434
            ++ + + +K  +      + L + 
Sbjct: 379 ELAQNSIWVKDLVEKTESLIPLNDF 403


>gi|228928378|ref|ZP_04091419.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228831425|gb|EEM77021.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 425

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 70/433 (16%), Positives = 128/433 (29%), Gaps = 53/433 (12%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFQTLNLEVTIQYNNRKLLNGILQAINIPTELTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDF-DDIISLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT      +S+    E +  P  A      
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLQLSIADFKEAFNNPLVADGVNEL 245

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           ++L   L       A GI    IF       L M                 S G G  R 
Sbjct: 246 QQLQQYL------IALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGG-RY 298

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARL 372
              +     D              +    +   + V   A            C +I  +L
Sbjct: 299 DNIIGAFRGDNMNYPTVGISFGLDVIYTALSQKETVSSTADVFIIPLGTELQCLQIAQQL 358

Query: 373 SK---VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                +  ++         G +   A    +    P  +I+G + +    V +++   G 
Sbjct: 359 RSTTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEEICTETVMLRNMKEGS 412

Query: 426 REDMSLEEVINYA 438
              + L  + NY 
Sbjct: 413 EVKVPLSSLSNYL 425


>gi|15895997|ref|NP_349346.1| histidyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|32130138|sp|Q97FJ7|SYH_CLOAB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|15025776|gb|AAK80686.1|AE007771_6 Histidyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|325510150|gb|ADZ21786.1| histidyl-tRNA synthetase [Clostridium acetobutylicum EA 2018]
          Length = 430

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 61/432 (14%), Positives = 129/432 (29%), Gaps = 46/432 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP  Q   +++ + I     + G + M  P ++  ++            E  + 
Sbjct: 11  PGFMELLPKEQLVFNDIVSKITGVYEQNGFLPMDTPIIEKEEVL-----LAKSAGETEKQ 65

Query: 97  ADRNDKAMIYGPTHEEVMTDI--FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             R D          ++      F +   S    PF  YQ+   +R E   +    R RE
Sbjct: 66  VYRIDNEDRKQVLRFDLTVPFSRFAAQYMSDLTFPFKRYQLGKVYRGERNQKG---RYRE 122

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--------GGDL 206
           F   D          S  +   +     +   ++GL S   +  +  I            
Sbjct: 123 FYQCDVD-VVGNGNLSIKNDAFIINMASKALRKIGLDSYKFQISNRKILTGVLEGLNITN 181

Query: 207 SHEFIVLADT-----------------GETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             E ++L D                  GE +       +     S+    +++  +    
Sbjct: 182 MQEVMILIDKYDKITEEQFLSELNKLIGEEKAKVISKVIKISGSSDEV-VENLKKVEIKN 240

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENK----RVSARGIEV--GHIFY-FGTKYSLPMSATF 302
           E          +V        + +++        RG++   G +F    T      S   
Sbjct: 241 EMLEKGIEEVEEVIKYLKLFGVEDSEYAINLKIIRGLDYYTGTVFETLLTGNESYGSICS 300

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
            G           +   G    +          +     +  +      + +   D    
Sbjct: 301 GGRYDNLAQNYTENVLPGVGMSIGITRLFFVLREIGFIENYNSSLNEKYLIVPIGD--TF 358

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           + C KI  +L   G          ++  +   A+ L     +++G   V++ ++ IK  +
Sbjct: 359 EYCTKILNKLLVNGKSAEIYFEEGKLKKKLTYANKLDIKYVILIGEDEVTNKELVIKDMI 418

Query: 423 TGIREDMSLEEV 434
           TG ++ +++EE+
Sbjct: 419 TGEQKKLNIEEI 430


>gi|315612585|ref|ZP_07887498.1| serine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
 gi|315315566|gb|EFU63605.1| serine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
          Length = 424

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G Y  +  +   L   N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHDSMFGTGNYPKFKDDTFELKATN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   ++LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---YVLIPTAEVPLTNYYRDEILDGKDLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALSTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|296393871|ref|YP_003658755.1| histidyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
 gi|296181018|gb|ADG97924.1| histidyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
          Length = 429

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 58/434 (13%), Positives = 122/434 (28%), Gaps = 21/434 (4%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
             S KL        Q  KG+  +LP           ++ E     G   + +P  +   L
Sbjct: 6   KKSQKL--------QAPKGVPDYLPPESARFVAAKRVLAEAAELAGYRPVELPVFEDTAL 57

Query: 80  WVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           +V       D  GKEM    D+  +++   P     +      H      LP   +    
Sbjct: 58  YVRGVGASTDIVGKEMYTFPDQGGRSLTLRPEWTAGVVRAVVEHGLDRGQLPVKLWYAGP 117

Query: 138 KFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
            FR E        R R+F      +  +           +    LR     G +      
Sbjct: 118 CFRYERPQSG---RYRQFQQMGVEAIGVDDPALDAEAVAVAEEGLRRLGLGGYRLEINSL 174

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                  +     +      +      +     P+   +    ++ +            +
Sbjct: 175 GDEACRPEYRERLLSFLRGLDLDEATRQRAERNPLRVLDDKRPEVKAQLVDAPLLVDHLS 234

Query: 258 ATSDVHNEKLFDSLPENKRVSA-------RGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
            ++  H E + + L     V+        RG++      F   ++   + +  G  G   
Sbjct: 235 DSAKEHFETVLEHL-RGLGVAYSLSPKLVRGLDYYTKTTFEFVHTGLGAQSALGGGGHYD 293

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            +     G     V  ++                       +   A     +     +  
Sbjct: 294 GLVADLGGQPLPGVGFSIGLERTLLALAAEGIPPQDSGSVPVFGVALGAEAKGRMTSLAG 353

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
            L + G  V        + +    AD  G    +I+G   ++  + ++K   +G +  + 
Sbjct: 354 ALREAGIGVDLAYGDRALKAAMRAADRSGARFVLIIGEAELASEQAQLKDMRSGEQSCVP 413

Query: 431 LEEVINYASHRFSN 444
           L +V++  + R + 
Sbjct: 414 LPDVVSEMASRLAE 427


>gi|46198668|ref|YP_004335.1| histidyl-tRNA synthetase [Thermus thermophilus HB27]
 gi|55980681|ref|YP_143978.1| histidyl-tRNA synthetase [Thermus thermophilus HB8]
 gi|54039668|sp|P62374|SYH_THET2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|62296696|sp|P56194|SYH_THET8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|46196291|gb|AAS80708.1| histidyl-tRNA synthetase [Thermus thermophilus HB27]
 gi|55772094|dbj|BAD70535.1| histidyl-tRNA synthetase [Thermus thermophilus HB8]
          Length = 421

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 56/409 (13%), Positives = 110/409 (26%), Gaps = 18/409 (4%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAM 104
            +    + A  R+     GA+E+  P  +   ++ +      D   KEM    DR  +++
Sbjct: 17  LRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSL 76

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SF 163
              P     M   +  H       P   +     FR E   +    R R+F   +     
Sbjct: 77  TLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKG---RYRQFHQVNYEALG 133

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLSHEFIVLAD 215
              P     +   ++     +  R         G      R  +        H   +  D
Sbjct: 134 SENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLREVLSPHREALSED 193

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNS--IVEQWTAPYAATSDVHNEKLFDSLPE 273
           + E         +D     +     ++        + +    +    + H E+L     E
Sbjct: 194 SKERLELNPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKEVERHLERLSVPY-E 252

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            +    RG++      F   +    + +  G  G+   +     G     V  A      
Sbjct: 253 LEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVPGVGFAFGVERV 312

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                     +   K   + +    +        +   L        +     +      
Sbjct: 313 ALALEAEGFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALRPR-LRAEYALAPRKPAKGLE 371

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            A   G      +G   +   +V +K   TG +  +S EEV  Y     
Sbjct: 372 EALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQAL 420


>gi|154491511|ref|ZP_02031137.1| hypothetical protein PARMER_01122 [Parabacteroides merdae ATCC
           43184]
 gi|154088312|gb|EDN87357.1| hypothetical protein PARMER_01122 [Parabacteroides merdae ATCC
           43184]
          Length = 451

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 63/449 (14%), Positives = 134/449 (29%), Gaps = 58/449 (12%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSAD-------------LWVE 82
           P G +          + +   IRE  +  G  ++  P +++               L+  
Sbjct: 7   PKGTRDFSPEEMAKRNYIFNTIREVYHLYGFQQIETPAMENLSTLMGKYGEEGDKLLFKI 66

Query: 83  SGRYDSYGK-EMLRLADRNDKAMIYGPTHEEVMTDI------FRSHIKSYRNLPFTFYQI 135
               D +       L++RN          + +  D+      +    ++    PF  YQI
Sbjct: 67  LNSGDCFSGITDEELSERNAVRFGMKACEKGLRYDLTVPFARYVVQHRNDIAFPFKRYQI 126

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIP 194
           Q  +R +   +    R REF   D          ++      M   + R   R+ +K   
Sbjct: 127 QPVWRADRPQKG---RYREFYQCDGDVVGSDSLVNEVELIQIMDEVFRRFGIRVCIKMNN 183

Query: 195 MRAES--GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD-------------- 238
            +  S    I G+      +     +       +  D     E ++              
Sbjct: 184 RKILSGIAEIIGEADKIVDITVAIDKLDKIGLDNVNDELRSKELSEGAIARLQPIIMLKG 243

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE----VGHIFYFGTKY 294
            +         E   +  A       E + D + + +  +   ++     G  +Y G  +
Sbjct: 244 TNREKLAVLKKELAASEIAMKGIAEMEFILDRIEKLELTADLELDLTLARGLNYYTGAIF 303

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI-----IWPDSVAPFKI 349
            +       G+          +   G   +    I    D               +    
Sbjct: 304 EVKALDVQIGSITGGGRYDNLTGVFGMDGMSGVGISFGADRIFDVLNQLELYPVDSLKTT 363

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            L+ +   ++   +    + +++   G          ++  Q   AD    P   IVG  
Sbjct: 364 QLLFVNFGEKE-ENYLLPLISKVRAAGIRTELYPESAKMKKQMGYADTKKIPFVAIVGEN 422

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +++ K+ +K+ LTG +  ++LEE+I   
Sbjct: 423 EINEGKINLKNMLTGEQSLVTLEELIERF 451


>gi|152990565|ref|YP_001356287.1| histidyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
 gi|254782339|sp|A6Q371|SYH_NITSB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|151422426|dbj|BAF69930.1| histidyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
          Length = 406

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 55/383 (14%), Positives = 102/383 (26%), Gaps = 17/383 (4%)

Query: 63  RTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
             G   +  P L+   L+  S     D  GKEM +  D+    ++  P     +   F  
Sbjct: 33  NYGFSYIETPLLEETALFKRSVGESSDIVGKEMYQFIDKGGNDIVLRPEGTAGVVRSFIE 92

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
           H    +     F+     FR E   +    R R+F      SF         +   +  +
Sbjct: 93  HKLDRQGGTHRFFYYGSMFRYERPQKG---RFRQFHQFGVESFGEPSVYEDAAIITLAKA 149

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
            L  F       I        +          L D       C +     PI   +   +
Sbjct: 150 ILDHFEIDYTLKINSLGCPVCLKPYREELIKFLEDQEHICDDCKRRRKLNPIRVLDCKNE 209

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA------RGIEVGHIFYFGTKY 294
               +     +         +   + L + L     +        RG++      F    
Sbjct: 210 QCQQIYENAPKLINNLCEECNQEFQTLKNLLDNEGIIYEVDENLVRGLDYYTRTAF-EFV 268

Query: 295 SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           S  + A    A G  +   +   G      V   I        I         +     I
Sbjct: 269 SNALGAQNAVAGGGRYDNLVEMLGGKPTPAVGFAIGIERILDLIKDKP----VQREGYFI 324

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                   +    I  +L +    V  +   + + +    AD       +I+G    ++ 
Sbjct: 325 GVMLPEALNIAFDIATKLRQSN-RVIMEYKPKSLKALLKGADRNNAKYALIIGEDEYNEG 383

Query: 415 KVEIKHRLTGIREDMSLEEVINY 437
            V IK       + + ++  +  
Sbjct: 384 LVWIKDLERKEEKRVDIQNFMER 406


>gi|325130012|gb|EGC52806.1| histidyl-tRNA synthetase [Neisseria meningitidis OX99.30304]
 gi|325135932|gb|EGC58542.1| histidyl-tRNA synthetase [Neisseria meningitidis M0579]
          Length = 431

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 113/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVNRWTRAYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEDKLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGERA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++  ++ N    
Sbjct: 414 QTVAAADLTNTLQQ 427


>gi|49479017|ref|YP_037440.1| histidyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|81395406|sp|Q6HG86|SYH1_BACHK RecName: Full=Histidyl-tRNA synthetase 1; AltName:
           Full=Histidine--tRNA ligase 1; Short=HisRS 1
 gi|49330573|gb|AAT61219.1| histidine--tRNA ligase (histidyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 425

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 70/433 (16%), Positives = 128/433 (29%), Gaps = 53/433 (12%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFQTLNLEVTIQYNNRKLLNGILQAIHIPTELTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDF-DDIISLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT      +S+    E +  P  A      
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLQLSIADFEEAFNNPLVADGVNEL 245

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           ++L   L       A GI    IF       L M                 S G G  R 
Sbjct: 246 QQLQQYL------IALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGG-RY 298

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARL 372
              +     D              +    +   + V   A            C +I  +L
Sbjct: 299 DNIIGAFRGDNMNYPTVGISFGLDVIYTALSQKETVSSTADVFIIPLGTELQCLQIAQQL 358

Query: 373 SK---VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                +  ++         G +   A    +    P  +I+G + +    V +++   G 
Sbjct: 359 RSTTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEEICTETVMLRNMKEGS 412

Query: 426 REDMSLEEVINYA 438
              + L  + NY 
Sbjct: 413 EVKVPLSSLSNYL 425


>gi|33861744|ref|NP_893305.1| seryl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|46577195|sp|Q7V0R7|SYS_PROMP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|33640112|emb|CAE19647.1| Seryl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 424

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 73/194 (37%), Gaps = 12/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +   + +  +  G +E+  P L +++    SG+   +  E  +     +  +
Sbjct: 171 NGARLERALVNFMLDVHSNNGYLELMPPALVNSESLQGSGQLPKFSNESFKC---ANDDL 227

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T   ++ I   + LP  +      FR E     R   G++R  +F   + 
Sbjct: 228 WLSPTAEVPLTAFHKNEIIDPKILPLKYVAYSPCFRREAGSYGRDTKGLIRLHQFNKVEL 287

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF----IVLADT 216
           Y F   P  S  ++ ++      I  +L L    +   +G +G   S  F     + +  
Sbjct: 288 YWFCH-PNKSLEAHKEITADAESILKKLNLPYRSVDICTGDLGFSSSRTFDLEVWLPSSQ 346

Query: 217 GETQVFCSKDFMDF 230
              ++    + +DF
Sbjct: 347 CYREISSCSNCLDF 360


>gi|22299095|ref|NP_682342.1| seryl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
 gi|30173151|sp|Q8DIN0|SYS_THEEB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|22295277|dbj|BAC09104.1| seryl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
          Length = 430

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 12/209 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + L LG      +   + +     G +E+  P L +      +G+   + +E  R AD
Sbjct: 167 FVTLLGLGAALERALIQFMLDSHRERGYVEVLPPLLVNTASLTGTGQLPKFAEESFRCAD 226

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                +   PT E  +T+++R  I +   LP         FR E     +   G++R  +
Sbjct: 227 ---DDLWLIPTAEVPVTNLYRDEILAADQLPIYHCAYTPCFRREAGSYGKDTRGLIRLHQ 283

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F      +      +      I   L L    +   +G +G         E 
Sbjct: 284 FNKVELVKFVHPETSAAEHEALVAD-AEFILQALKLPYRVIELCTGDLGFAAMKCYDLEV 342

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDF 239
            + A     ++    +F DF        F
Sbjct: 343 WLPAAGCYREISSCSNFGDFQARRAKIRF 371


>gi|255535813|ref|YP_003096184.1| histidyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255342009|gb|ACU08122.1| Histidyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
          Length = 451

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 69/204 (33%), Gaps = 6/204 (2%)

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLP 297
           +  ++ +  +  E  TA       V  + +   +          +  G  +Y G  + + 
Sbjct: 247 NLKELKTKFAGNEIGTAGVDELEVVLTKCMDLGISSASLKFDITLARGLDYYTGAIFEVK 306

Query: 298 MSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW-----PDSVAPFKISLI 352
            +    G+ G        +   G   +    I    D   ++          A   +  +
Sbjct: 307 ANGVAMGSIGGGGRYDNLTEVFGVKNIPGIGISFGLDRIYLVMEELALFPQNAANAVKYL 366

Query: 353 NIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
                +    +   KI A+L   G          ++  QF  A+  G P  V  G + ++
Sbjct: 367 FANYGESEALE-ATKIIAKLRANGISAELYPESSKLKKQFTYAEKKGIPNLVFFGEQEIA 425

Query: 413 DSKVEIKHRLTGIREDMSLEEVIN 436
           D  + +K+  +G +E ++L+  ++
Sbjct: 426 DRNITVKNLQSGEQETINLDTFLD 449


>gi|268572551|ref|XP_002648989.1| C. briggsae CBR-GRS-1 protein [Caenorhabditis briggsae]
          Length = 741

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 85/314 (27%), Gaps = 28/314 (8%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
              Y         K   +   + + +              ++  +      E +  AD  
Sbjct: 417 LGYYMARCHQFLMKVGIDGRRLRFRQHLSNEMAHYAQDCWDAEILTSYGWIECVGNADRA 476

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
              +       +  + +E    + +       +   A          +K+  +L +    
Sbjct: 477 CYDLQQHYKATNVKLVAEKKLPEPVDVDIVEAQANMALLGKKYKKEAKKIQTALQQLTSE 536

Query: 278 SARGIE-------------VGHIFYFG------TKYSLPMSATFKGADGKDHYVQMGSYG 318
               IE              G  F          KYS  +          +    +G   
Sbjct: 537 QVTAIEAELVAKQLYNLDINGEKFELAPDLVNIKKYSKKIHVQEITPSVIEPSYGIGRIM 596

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
              +       E       + +   VAP K S++ I A+D +     + +   LS     
Sbjct: 597 YALLEHSFRQREGDEQRTFLAFKPLVAPIKCSILPISANDTLV-PVMDAVKEELSHYELS 655

Query: 379 VFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS-----KVEIKHRLTGIREDMSLEE 433
              DD    IG ++A  D +G P  + V              V I+H  T  +  + + E
Sbjct: 656 YKVDDSSGTIGRRYARTDEIGIPFGITVDF---ESGKTTPYTVTIRHAETMSQIRLEVSE 712

Query: 434 VINYASHRFSNNRP 447
           +    S   S  + 
Sbjct: 713 LGRLISDLVSGRQQ 726



 Score = 48.6 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 15/109 (13%)

Query: 9   PILQE-----NPRDA---EIASHKLMLRTGMIHQHSK------GIYSWLPLGQKALDNVN 54
            +L+E      P++A    +    L+ R     Q         G+Y + P+G     N+ 
Sbjct: 114 KLLEETEIALAPKEASFDRLKLEDLLKRRFFYDQSFAIYGGVTGLYDFGPMGCALKANML 173

Query: 55  AIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
              R+      G +E+   +L    +   SG  D +   M++     + 
Sbjct: 174 QQWRKHFILEEGMLEVDCTSLTPEPVLKASGHVDRFADWMVKDTKNGEC 222


>gi|170035421|ref|XP_001845568.1| bifunctional aminoacyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167877384|gb|EDS40767.1| bifunctional aminoacyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 1534

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 50/141 (35%), Gaps = 5/141 (3%)

Query: 37   KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
             G Y            + A    E  + G  E   P   S A L  E      +  E+  
Sbjct: 1314 SGCYILRHWSFAVWKAIKAWFDAEITKMGVKECYFPIFVSRAALEREKDHIADFAPEVAW 1373

Query: 96   LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            +    +  +       PT E VM   +   I+SYR+LP    Q     R E +     +R
Sbjct: 1374 VTKSGESDLAEPIAVRPTSETVMYPAYAKWIQSYRDLPIRLNQWNNVVRWEFKHPQPFLR 1433

Query: 152  SREFLMKDAYSFDLTPEGSKH 172
            +REFL ++ ++   T   +  
Sbjct: 1434 TREFLWQEGHTAFATQAEATE 1454



 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 50/141 (35%), Gaps = 5/141 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
            G Y            + A    E  + G  E   P   S A L  E      +  E+  
Sbjct: 662 SGCYILRHWSFAVWKAIKAWFDAEITKMGVKECYFPIFVSRAALEREKDHIADFAPEVAW 721

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +    +  +       PT E VM   +   I+SYR+LP    Q     R E +     +R
Sbjct: 722 VTKSGESDLAEPIAVRPTSETVMYPAYAKWIQSYRDLPIRLNQWNNVVRWEFKHPQPFLR 781

Query: 152 SREFLMKDAYSFDLTPEGSKH 172
           +REFL ++ ++   T   +  
Sbjct: 782 TREFLWQEGHTAFATHAEATE 802


>gi|73949318|ref|XP_535213.2| PREDICTED: similar to Histidyl-tRNA synthetase (Histidine--tRNA
           ligase) (HisRS) isoform 1 [Canis familiaris]
          Length = 509

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 59/488 (12%), Positives = 131/488 (26%), Gaps = 64/488 (13%)

Query: 11  LQENPRDAEIA----SHKLMLRTG---------MIHQHSKGIYSWLPLGQKALDNVNAII 57
           L++    AE      +  L L+            + +  KG   + P      + V  +I
Sbjct: 21  LKQQKASAEQIEEEVAKLLKLKAQLGPDEGKQKFVLKTPKGTRDYSPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +    +G+Y    K +  L D+  + +             
Sbjct: 81  ISCFKRHGAEVIDTPVFELKETL--TGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-----DLTPEGSKH 172
                 +   L         K      P     R REF   D          +       
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLE 193

Query: 173 SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
              ++  S       + +    +      I G    +F  +  + +     S + +   +
Sbjct: 194 IMCEILRSLQIGDFLVKVNDRRILDGMFAICGVPDSKFRTICSSVDKLDKVSWEEVKNEM 253

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDV-------HNEKLFDSLPENKRVSARGIEVG 285
             E     ++        Q     +    +        N++  + L + K +       G
Sbjct: 254 VGEKGLAPEVADHIGDYVQQHGGISLVEQLLQDPELSQNKQALEGLGDLKLLFEYLTLFG 313

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES--SHDGKGIIWPDS 343
                    SL     +      +  +       G   +    + +   +DG   ++   
Sbjct: 314 IADKISFDLSLARGLDYYTGVIYEAVLLQTPVQAGEEPLGVGSVAAGGRYDGLVGMFDPK 373

Query: 344 VAPFKISLINIKAHD-----QVCRDACE------------------------KIYARLSK 374
                   ++I         +   +A E                        K+ + L  
Sbjct: 374 GRKVPCVGLSIGVERIFSIVEQRLEATEEKVRTTETQVLVASAQKKLLEERLKLVSELWN 433

Query: 375 VGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G           ++ +Q    +  G PL  I+G + + D  ++++   +    D+  E+
Sbjct: 434 AGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVASREEVDVPRED 493

Query: 434 VINYASHR 441
           ++     R
Sbjct: 494 LVEEIKRR 501


>gi|323475177|gb|ADX85783.1| histidyl-tRNA synthetase [Sulfolobus islandicus REY15A]
          Length = 426

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/415 (11%), Positives = 127/415 (30%), Gaps = 31/415 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
           +  + +  R+   + G  E+  P ++   L+   G  +   + M    D+ D+ +   P 
Sbjct: 21  IRYLESTFRDLAIKYGYSEIITPVVEEFKLFALKG-GEELRETMYVFKDKADRELSLRPE 79

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
               +   +  +++S       FY   +   DE  P++G  R  EF          +   
Sbjct: 80  ITPSVARAYIQNLQSSPKPIRLFYFGTVYRYDE--PQYGRYR--EFRQAGIEMIGDSSIL 135

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFM 228
           +      +   Y           I ++  +  I   +  ++ +  +  E  +    K+ +
Sbjct: 136 ADLEVLDLL--YNFYDKLNLSNDITIKINNIGIFRKIMDKYNIEDNLQEHILHLIDKNEI 193

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--------------- 273
           +  +     +  +   ++   +  T       D+ +    + +                 
Sbjct: 194 NEALDILEKNLKNKDIIDFFNKILTKKDTKLEDIESLAELEEVSRLDIKSEFLYLFRLSR 253

Query: 274 ------NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                  K     G   G  +Y G  +   +  + + +              G +   A 
Sbjct: 254 ILSNLNIKFKIDLGFVRGLAYYTGLIF-EVLHPSVQFSIAGGGRYDKLIELYGGLPSPAI 312

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                 +   ++  D      +++I I   +         +   L K    V  +   + 
Sbjct: 313 GFAIGVERTLLVIKDLKVEEPVNVIVIGMSEDTIPSM-FMVSRILRKEEYKVVINTKDQP 371

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +          GF + +I+G + +  + + +++ +T  +  + LE + +      
Sbjct: 372 LSKLLPYYASQGFKVAIIIGKQELEKNMITVRNLITRKQISVPLENIEDAIKQTL 426


>gi|262382355|ref|ZP_06075492.1| histidyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|262295233|gb|EEY83164.1| histidyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
          Length = 451

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 62/456 (13%), Positives = 132/456 (28%), Gaps = 72/456 (15%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSAD-------------LWVE 82
           P G +          + +   IRE  +  G  ++  P +++               L+  
Sbjct: 7   PKGTRDFSPEEMAKRNYIFNTIREVFHLYGFQQIETPAMENLSTLMGKYGEEGDKLLFKI 66

Query: 83  SGRYDSYGK-EMLRLADRNDKAMIYGPTHEEVMTDI------FRSHIKSYRNLPFTFYQI 135
               D +       L ++N          + +  D+      +    ++  + PF  YQI
Sbjct: 67  LNSGDCFTGISDEELMEKNPLRFAAKACEKGLRYDLTVPFARYVVQHRNEISFPFKRYQI 126

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           Q  +R +   +    R REF   D          ++    ++         R G++    
Sbjct: 127 QPVWRADRPQKG---RYREFYQCDGDVVGSDSLINEVELIQIMDEVFH---RFGIRVCIK 180

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW--- 252
                 +      E I  AD                + + N +          +E+    
Sbjct: 181 MNNRKIL--SGIAEIIGEADKIVDITVAIDKLDKIGLDNVNEELRSKGLPEEAIERLQPI 238

Query: 253 -----------------------TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                                       A  D   E++  +    +      +  G  +Y
Sbjct: 239 IMLQGSNQEKIATLKEVLSASETGLKGVAELDFILERISHTPIRAELELDLTLARGLNYY 298

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD------- 342
            G  + +       G+          +   G   V         D    +          
Sbjct: 299 TGAIFEVKALDVQIGSITGGGRYDNLTGVFGMEGVSGVGFSFGADRIFDVLNQLDLYPEG 358

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           S+   ++  +N    +++       + A++ K G          ++  Q   AD    P 
Sbjct: 359 SLKTTQLLFVNFGQKEEIHL---LPLIAKVRKAGIRTELYPESTKMKKQMGYADAKKIPF 415

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             IVG   ++++K+ +K+ LTG +  +++EE+I   
Sbjct: 416 VAIVGENEMAENKINLKNMLTGEQTLVTIEELIERF 451


>gi|13357845|ref|NP_078119.1| histidyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762008|ref|YP_001752369.1| histidyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920173|ref|ZP_02931562.1| histidyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508753|ref|ZP_02958226.1| histidyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701935|ref|ZP_02971579.1| histidyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|32130153|sp|Q9PQK6|SYH_UREPA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189082317|sp|B1AIS5|SYH_UREP2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|11271791|pir||C82910 histidyl-tRNA synthetase UU285 [imported] - Ureaplasma urealyticum
 gi|6899258|gb|AAF30694.1|AE002125_5 histidyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827585|gb|ACA32847.1| histidyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902549|gb|EDT48838.1| histidyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182675686|gb|EDT87591.1| histidyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186700682|gb|EDU18964.1| histidyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 420

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 54/400 (13%), Positives = 115/400 (28%), Gaps = 19/400 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +   +     R G  ++  P  + A+L+++S     D   KEM    D++D+ +   
Sbjct: 21  FKLLENFLLSTTKRYGFQQIKTPVFEFAELFMKSAGESSDLVSKEMYLFKDKSDRWLALR 80

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   +  + +     LP      +  FR E        R R+F           
Sbjct: 81  PEGTAGVIRAVVENKLLLNHPLPLKLMYFEPCFRYERPQAG---RQRQFHQFGVEVLGTK 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP----IGGDLSHEFIVLAD-----TG 217
                     +  + L+               S          L   F +        + 
Sbjct: 138 NIYYDFELIALADTILKKLMISNYILEINYISSPHNRSLWVKSLQEYFHLHRTELTPLSQ 197

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIV--EQWTAPYAATSDVHNEKLFDSLPENK 275
           E         +D  + S+         ++  +  E+          + +  +   + E  
Sbjct: 198 ERITTNPLRILDDKLESQKLVVKQAPKISHFLSNEEKEEFNLIKKMLDDYNIKYYVNEG- 256

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDG 335
            V       G +F F +     +  +     G+   +   + G     +   +       
Sbjct: 257 LVRGLDYYSGLVFEFISTSPKLLGQSTIIGGGRYGELIKQTGGPNYEGIGFGIGIERLLI 316

Query: 336 KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG-CDVFWDDMGEQIGSQFAV 394
                  ++         I   D+   +   K+   L      +V       +    F +
Sbjct: 317 ALSETNKNILNTDDDKYLIAFFDKELENEAIKLTQILRINNQLNVDIILSSTKADKIFKL 376

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           A  L     +I+  K  SD K+ +K  L   ++ +SL+E+
Sbjct: 377 AQRLNVKKLIILAKKEWSDKKIILKDLLNFKQDLLSLDEI 416


>gi|212536096|ref|XP_002148204.1| glycyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
 gi|210070603|gb|EEA24693.1| glycyl-tRNA synthetase [Penicillium marneffei ATCC 18224]
          Length = 657

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 87/293 (29%), Gaps = 25/293 (8%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
            +   + + +              ++         E +  AD     +   K+    P+ 
Sbjct: 346 VDYSKLRFRQHMANEMAHYAADCWDAELHTSYGWIECVGCADRSAYDLTVHKNKTGAPLF 405

Query: 234 SENTDFDDIISLNSIVEQWTAPYAA---TSDVHNEKLFDSLPENKR-------------- 276
                 +  +     ++   + +           E   D+L E  R              
Sbjct: 406 VREALPEPRVFEEWQIDIAKSKFGPRFKKDAKKVEAAIDALSEELREKLSLDLAQNGKIE 465

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           +   GIE G               T      +++   +     G  R++ +++E S+  +
Sbjct: 466 IDVEGIEGGKA-ELDNDLVTIEKRTVT-QHIREYTPNVVEPSFGIGRILYSLLEHSYWHR 523

Query: 337 GIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGS 390
                  V  F   +   K      +  +      +++  +  + G     DD    IG 
Sbjct: 524 AGDEARGVLSFPPLVSPTKVLLVPLSTHESFVPFVKRLGLKFRRAGISSKVDDSSSSIGK 583

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           ++A  D LG P  + +  + V D+   ++ R +  +   S +E++        
Sbjct: 584 RYARNDELGTPFGITIDFQSVKDNTFTLRDRDSTKQVRGSEDEILQAVKSMVD 636



 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G     N+  I R+        +E+    L   ++   SG  D +   M +
Sbjct: 38 AGLYDYGPPGCALQANIIDIWRKHFVLEEDMLEVDTTMLTPHEVLKTSGHVDKFADWMCK 97


>gi|76155255|gb|AAX26513.2| SJCHGC03409 protein [Schistosoma japonicum]
          Length = 230

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 55/167 (32%), Gaps = 9/167 (5%)

Query: 289 YFGTKYSLPMSATFKGADG-KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                 S+     ++      +    +     G  R++  + E S   +      +    
Sbjct: 44  QVDINNSMVQVKEYENIVHVNEIVPNVIEPSFGIGRILYTIFEHSFRVREGDEQRTYLSV 103

Query: 348 KISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
              L   K      ++         K+ A L+K G     D+    IG ++A  D +  P
Sbjct: 104 SPVLAPYKCSLLPLSNHADFTPFIRKLSAELTKYGVSHRIDESSGSIGRRYARTDQIAIP 163

Query: 402 LQVIVGSKFVSD--SKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
             + +    ++   +   ++ R +  +  + L+E+ +      + N+
Sbjct: 164 YGITIDFDTLNKLPASATLRERDSMKQIRVPLDELPSLMFDIANGNK 210


>gi|227828115|ref|YP_002829895.1| histidyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|227830822|ref|YP_002832602.1| histidyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|238620315|ref|YP_002915141.1| histidyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
 gi|259511960|sp|C4KIQ9|SYH_SULIK RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|259511961|sp|C3MRE4|SYH_SULIL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|259511962|sp|C3MY40|SYH_SULIM RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|227457270|gb|ACP35957.1| histidyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|227459911|gb|ACP38597.1| histidyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|238381385|gb|ACR42473.1| histidyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
          Length = 426

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/415 (11%), Positives = 127/415 (30%), Gaps = 31/415 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
           +  + +  R+   + G  E+  P ++   L+   G  +   + M    D+ D+ +   P 
Sbjct: 21  IRYLESTFRDLAIKYGYSEIITPVVEEFKLFALKG-GEELRETMYVFKDKADRELSLRPE 79

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
               +   +  +++S       FY   +   DE  P++G  R  EF          +   
Sbjct: 80  ITPSVARAYIQNLQSSPKPIRLFYFGTVYRYDE--PQYGRYR--EFRQAGIEMIGDSSIL 135

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFM 228
           +      +   Y           I ++  +  I   +  ++ +  +  E  +    K+ +
Sbjct: 136 ADLEVLDLL--YNFYDKLNLSNDITIKINNIGIFRKIMDKYNIEDNLQEHILHLIDKNKI 193

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--------------- 273
           +  +     +  +   ++   +  T       D+ +    + +                 
Sbjct: 194 NEALDILEKNLKNKDIIDFFNKILTKKDTKLEDIESLAELEEVSRLDIKSEFLYLFRLSR 253

Query: 274 ------NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                  K     G   G  +Y G  +   +  + + +              G +   A 
Sbjct: 254 ILSNLNIKFKIDLGFVRGLAYYTGLIF-EVLHPSVQFSIAGGGRYDKLIELYGGLPSPAI 312

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                 +   ++  D      +++I I   +         +   L K    V  +   + 
Sbjct: 313 GFAIGVERTLLVIKDLKVEEPVNVIVIGMSEDTIPSM-FMVSRILRKEEYKVVINTKDQP 371

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +          GF + +I+G + +  + + +++ +T  +  + LE + +      
Sbjct: 372 LSKLLPYYASQGFKVAIIIGKQELEKNMITVRNLITRKQISVPLENIEDAIKQTL 426


>gi|147676348|ref|YP_001210563.1| seryl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
 gi|189083576|sp|A5D6D5|SYS_PELTS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|146272445|dbj|BAF58194.1| seryl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
          Length = 422

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 81/249 (32%), Gaps = 19/249 (7%)

Query: 14  NPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIE 68
            PR       +L +    R G +         +   G +    V   + +      G +E
Sbjct: 135 TPRPHWEIGEQLDIIDFERGGKV--AGARFSFYKGYGARLERAVINFMLDLHTAEHGYVE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + + D  V +G+   + ++M +L           PT E  +T+++R+ I     L
Sbjct: 193 IFPPFIVNRDSMVGTGQLPKFAEDMFKLE---GAEYYLIPTAEVPVTNLYRNEILDGEKL 249

Query: 129 PFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P         FR E         G++R  +F   +   F    +              ++
Sbjct: 250 PILHCAYSACFRAEAGAAGRDTRGLIRQHQFNKVELVKFCRPEDSYDELEKLTAD-AEKV 308

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             +LGL    +   +G +G   +     E  + +     ++    +F DF        F 
Sbjct: 309 LQKLGLPYRVVVLCTGDLGFSAAKTYDLEVWLPSYQEYKEISSCSNFADFQARRAGIRFR 368

Query: 241 DIISLNSIV 249
           +       V
Sbjct: 369 NARGKTEFV 377


>gi|322517430|ref|ZP_08070303.1| serine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
 gi|322123912|gb|EFX95471.1| serine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
          Length = 446

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 73/211 (34%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K    +   + +E  + G  EM  P + + D    +G+Y  + ++     + +
Sbjct: 186 FYKGLGAKLERAIYNFMLDEHAKEGYTEMITPYMVNHDSMFGTGQYPKFKED---TFELD 242

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 243 GTDYVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 302

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F             +      I  +L L    +   +G +G   +     E  +
Sbjct: 303 KVEMVKFSKPESSYDELEKMVVN-AENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 361

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 362 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 392


>gi|218961936|ref|YP_001741711.1| seryl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
 gi|167730593|emb|CAO81505.1| seryl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
          Length = 419

 Score = 70.2 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 15/195 (7%)

Query: 14  NPRDA-EIASHKLML---RTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE-EQNRTGAIE 68
            P+D  E+A    +L   R   I     G   +   G +    +   + E    +    E
Sbjct: 135 TPKDHLELAIQNKLLDLPRGAKI--SGSGFPLYTGEGARIERALINFMLEFHLQKHNYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + +      +G+     ++M R+       +   PT E  +T+IF   + SY++L
Sbjct: 193 LMAPVIVNRKTMTGTGQLPKLEEDMYRIE---KDDLFLIPTAEVPVTNIFADEVLSYKDL 249

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  F      FR E     +   G+ R  +F   +   F   PE S  +  ++      I
Sbjct: 250 PQKFVAYTPCFRREAGSYGKETKGLQRLHQFNKVELVHF-TEPEKSAEALEQILSDAEDI 308

Query: 185 FHRLGLKSIPMRAES 199
                L    +   +
Sbjct: 309 LQAFNLHYRVVALCT 323


>gi|229579718|ref|YP_002838117.1| histidyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
 gi|259511964|sp|C3N7K1|SYH_SULIY RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|228010433|gb|ACP46195.1| histidyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
          Length = 426

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 47/415 (11%), Positives = 127/415 (30%), Gaps = 31/415 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
           +  + +  R+   + G  E+  P ++   L+   G  +   + M    D+ D+ +   P 
Sbjct: 21  IRYLESTFRDLAIKYGYSEIITPVVEEFKLFALKG-GEELRETMYVFKDKADRELSLRPE 79

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
               +   +  +++S       FY   +   DE  P++G  R  EF          +   
Sbjct: 80  ITPSVARAYIQNLQSSPKPIRLFYFGTVYRYDE--PQYGRYR--EFRQAGIEMIGDSSIL 135

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFM 228
           +      +   Y           I ++  +  I   +  ++ +  +  E  +    K+ +
Sbjct: 136 ADLEVLDLL--YNFYDKLNLSNDITIKINNIGIFRKIMDKYNIEDNLQEHILHLIDKNKI 193

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--------------- 273
           +  +     +  +   ++   +  T       D+ +    + +                 
Sbjct: 194 NEALDILEKNLKNKDIIDFFNKILTKKDTKLEDIESLAELEEVSRLDIKSEFLYLFRLSR 253

Query: 274 ------NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                  K     G   G  +Y G  +   +  + + +              G +   A 
Sbjct: 254 ILSDLNIKFKIDLGFVRGLAYYTGLIF-EVLHPSVQFSIAGGGRYDKLIELYGGLPSPAI 312

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                 +   ++  D      +++I I   +         +   L K    V  +   + 
Sbjct: 313 GFAIGVERTLLVIKDLKVEEPVNVIVIGMSEDTIPSM-FMVSRILRKEEYKVVINTKDQP 371

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +          GF + +I+G + +  + + +++ +T  +  + LE + +      
Sbjct: 372 LSKLLPYYASQGFKVAIIIGKQELEKNMITVRNLITRKQISVPLENIEDAIKQTL 426


>gi|307128632|ref|YP_003880662.1| glycyl-tRNA synthetase [Candidatus Sulcia muelleri CARI]
 gi|306483094|gb|ADM89964.1| glycyl-tRNA synthetase [Candidatus Sulcia muelleri CARI]
          Length = 495

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 99/346 (28%), Gaps = 46/346 (13%)

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D N K  +   T +    +       S   +PF   QI   FR+E+  R  + R REF  
Sbjct: 188 DNNKKLYLRPETAQGSFINFLNVKKTSKIKIPFGIAQIGKVFRNEIIARQFLFRMREFEQ 247

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            +   F   P   +  Y+      L+    LG+K    R        +         D  
Sbjct: 248 MEMQFFVC-PGEEEKWYDYWKEYRLKWHLSLGIKKDNYR------FYNHDKLAHYSKDAC 300

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
           + Q      F +       TDFD         ++        +  +   + ++       
Sbjct: 301 DIQFKFPFGFKELEGIHSRTDFDMKNHEKFSKKKLRYFDFKKNISYIPYIIETS------ 354

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
              G++     +     S       K        V    Y +  ++V    +   ++   
Sbjct: 355 --IGLDR---MFLAIFSSCLKEEKIKNDINHKRIVFKIPYILSPIKVAILPLVKKNELTF 409

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
           I             +     D                             IG ++   D 
Sbjct: 410 IGKKIFKKFKLYYSLVYDEKD----------------------------SIGKRYRRQDA 441

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +G P+ + +    + D+ V I++R +  ++ + + ++        +
Sbjct: 442 IGTPICLTIDYDSLKDNCVTIRYRDSMNQKRIPILKIKKNIEKSIN 487


>gi|207110458|ref|ZP_03244620.1| prolyl-tRNA synthetase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 74

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 31/66 (46%)

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
           Y RL + G D   DD   + G++    +L+G  L +IVG + +   + E   R    ++ 
Sbjct: 2   YERLLQKGVDALLDDRDARFGAKMRDFELIGERLALIVGKQTLESKEFECIKRANLEKQT 61

Query: 429 MSLEEV 434
           +   E+
Sbjct: 62  LKDTEL 67


>gi|167972928|ref|ZP_02555205.1| glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|167973904|ref|ZP_02556181.1| glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|167988087|ref|ZP_02569758.1| glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|195867508|ref|ZP_03079511.1| glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|209554035|ref|YP_002284929.1| glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|225551200|ref|ZP_03772146.1| glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
 gi|184209120|gb|EDU06163.1| glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|188019172|gb|EDU57212.1| glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|188998042|gb|EDU67139.1| glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195660752|gb|EDX54006.1| glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|209541536|gb|ACI59765.1| glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|225379015|gb|EEH01380.1| glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS) [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
          Length = 114

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK---FVSDSKV 416
             ++  E +Y ++  +   V +D+ G  IG ++   D +G    + +         D   
Sbjct: 20  KLKEKAEVVYNKILDLNISVTFDNSG-SIGKRYRRQDAIGTIYCITIDYDSFGDEHDPTF 78

Query: 417 EIKHRLTGIREDMSLEEVINYASHR 441
            I+ R T  ++ + L E+  Y S +
Sbjct: 79  TIRERNTMAQKRIKLSELSLYLSQK 103


>gi|110639058|ref|YP_679267.1| histidyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|123354414|sp|Q11RN9|SYH_CYTH3 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|110281739|gb|ABG59925.1| histidyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
          Length = 453

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 59/458 (12%), Positives = 127/458 (27%), Gaps = 73/458 (15%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV------------- 81
           LP G +            +   IRE   + G + +  P +++  +               
Sbjct: 6   LPKGTRDFGPAQMLKRQYLLQTIREIFTKYGFLPIETPAMENLSVLTGKYGDEGDQLIYK 65

Query: 82  -----------ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
                      E        K+++    +              +        ++    PF
Sbjct: 66  ILNSGDFIQGVEQNHLQEGYKKLIPKISKKALRYDLTVPFARHVVMN-----RNDITFPF 120

Query: 131 TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL 190
             YQIQ  +R +   +    R  EF+  DA          +             F  LG+
Sbjct: 121 KRYQIQPVWRADRPQKG---RYCEFMQCDADVVGTDSLLCEAEIVL---MIHEAFAALGI 174

Query: 191 KSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK---DFMDFPIPSENTDFDDIISLNS 247
               ++  +  I   ++          E  V   K      +  +    T       L  
Sbjct: 175 TDFVVKINNRKILSGIADAIGKEGSEAELCVAIDKLDKIGKEAVLEELKTKGFTDSQLTR 234

Query: 248 IVEQWTAP------------------YAATSDVHNEKLF---------DSLPENKRVSAR 280
           ++  +                              EK+F         ++  E     AR
Sbjct: 235 LLPVFDLKGNNAEIFPLLRTILAQSSVGLKGIDELEKVFTLIEKSGLGNASIETDLTLAR 294

Query: 281 GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           G+       F  K       +  G    D+   +      +   ++  I+  +D    + 
Sbjct: 295 GLSYYTGAIFEVKILNVQMGSVCGGGRYDNLTGVFGLPNVSGVGISFGIDRIYDVMNELN 354

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
                    + + I A D+        +  +L   G +        +I  Q + AD    
Sbjct: 355 LFPSQESNSTRLLICAFDENTFMHALPMVTKLRAQGINTELYPDPVKIKKQLSYADDKKI 414

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           P  +++G   ++     +K+ ++G +  ++ +EV++  
Sbjct: 415 PFALLIGEDEMNQGLYSLKNLISGEQFKVTFDEVVHKL 452


>gi|309355899|emb|CAP38159.2| CBR-GARS-1 protein [Caenorhabditis briggsae AF16]
          Length = 787

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 87/313 (27%), Gaps = 26/313 (8%)

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
              Y         K   +   + + +              ++  +      E +  AD  
Sbjct: 462 LGYYMARCHQFLMKVGIDGRRLRFRQHLSNEMAHYAQDCWDAEILTSYGWIECVGNADRA 521

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
              +       +  + +E    + +       +   A          +K+  +L +    
Sbjct: 522 CYDLQQHYKATNVKLVAEKKLPEPVDVDIVEAQANMALLGKKYKKEAKKIQTALQQLTSE 581

Query: 278 SARGIEVGHIFYF-------GTKYSLPMSATFKGADGKDHYVQMGSYG-----IGAMRVV 325
               IE   +          G K+ L           K  +VQ  +        G  R++
Sbjct: 582 QVTAIEAELVAKQLYNLDINGEKFELAPDLVNIKKYSKKIHVQEITPSVIEPSYGIGRIM 641

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAH------DQVCRDACEKIYARLSKVGCDV 379
            A++E S   +      +   FK  +  IK        +       + +   LS      
Sbjct: 642 YALLEHSFRQREGDEQRTFLAFKPLVAPIKCSILPISANDTLVPVMDAVKEELSHYELSY 701

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS-----KVEIKHRLTGIREDMSLEEV 434
             DD    IG ++A  D +G P  + V              V I+H  T  +  + + E+
Sbjct: 702 KVDDSSGTIGRRYARTDEIGIPFGITVDF---ESGKTTPYTVTIRHAETMSQIRLEVSEL 758

Query: 435 INYASHRFSNNRP 447
               S   S  + 
Sbjct: 759 GRLISDLVSGRQQ 771



 Score = 48.6 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 15/109 (13%)

Query: 9   PILQE-----NPRDA---EIASHKLMLRTGMIHQHSK------GIYSWLPLGQKALDNVN 54
            +L+E      P++A    +    L+ R     Q         G+Y + P+G     N+ 
Sbjct: 155 KLLEETEIALAPKEASFDRLKLEDLLKRRFFYDQSFAIYGGVTGLYDFGPMGCALKANML 214

Query: 55  AIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
              R+      G +E+   +L    +   SG  D +   M++     + 
Sbjct: 215 QQWRKHFILEEGMLEVDCTSLTPEPVLKASGHVDRFADWMVKDTKNGEC 263


>gi|55736407|gb|AAV60049.1| seryl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55738291|gb|AAV61932.1| seryl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
          Length = 446

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 74/211 (35%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  EM  P + + D    +G+Y  + ++     + +
Sbjct: 186 FYKGLGARLERAIYNFMLDEHAKEGYTEMITPYMVNHDSMFGTGQYPKFKED---TFELD 242

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 243 GTDYVLIPTAEVPLTNYYRGEILDGKELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFH 302

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +        +      I  +L L    +   +G +G   +     E  +
Sbjct: 303 KVEMVKFSKPEDSYDELEKMVVN-AENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 361

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 362 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 392


>gi|294938788|ref|XP_002782199.1| histidyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239893697|gb|EER13994.1| histidyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 491

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 67/429 (15%), Positives = 131/429 (30%), Gaps = 35/429 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   + P   +  + + +  R    + G  E   P L++ DL+      +   ++M   
Sbjct: 59  SGTRDFFPEDMRVRNWLFSQWRAVSTQYGFSEYDAPVLENEDLYKRK-AGEEIVEQMYNF 117

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+ D  +   P     +  +  S ++    LP  ++ I   +R E   R    R RE  
Sbjct: 118 IDKEDHHVTLRPEMTPTLARMVLSRVR-MSVLPLKWFSIPQCWRFETTQRG---RKREHY 173

Query: 157 MKDAYSFDLTPEGSK----HSYNKMFVSYLRIFHRLGLKSIPMRA--ESGPIGGDLSHEF 210
             +     ++   ++     +    F         +G+K              G  + EF
Sbjct: 174 QWNCDIVGISDITAELELLATMVGFFKRVGLTSADVGIKVNSRAILQSVLKASGVGADEF 233

Query: 211 IVLA------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT--APYAATSDV 262
             +       D    +    +   D  + +   +     +    +E++   A  + T DV
Sbjct: 234 AKVCVVVDKIDKVGREEVVRQMVEDIGLDTAVAERVVDATAAGSIEEFKSIAGESCTEDV 293

Query: 263 HN-----EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            +     E   +   ++  V    +  G  +Y G  +          A            
Sbjct: 294 ADVERLFEFAKNYGIDDWLVFDASVVRGLAYYTGIVWEAFDRKGELRAIAGGGRYDRLLS 353

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSV---APFKISLINIKAHDQVCRDACEKIYARLSK 374
             GA   +  V     D                   +  + A  +       ++ A L  
Sbjct: 354 LYGAPSEIPCVGFGFGDCVIYELLLERGLLPEIPHRVDFVVAAYKGMYGQALEVAAGLRS 413

Query: 375 VG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-----RE 427
            G   DV   + G+++  QF  AD +G      V        KV IK   TG      + 
Sbjct: 414 SGATVDVML-EAGKRVDKQFRYADRVGADKIAFVAPSEWEAGKVRIKDLRTGDSEARVQI 472

Query: 428 DMSLEEVIN 436
           D+ + ++ N
Sbjct: 473 DIPVADLAN 481


>gi|86609248|ref|YP_478010.1| seryl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123501982|sp|Q2JKN4|SYS_SYNJB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|86557790|gb|ABD02747.1| seryl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 435

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 72/206 (34%), Gaps = 12/206 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      + A++ E     G  E+  P L ++     +G+   + ++  R AD     + 
Sbjct: 174 GAALERALIAMMLERHIAAGYTEVIPPFLVNSAALQGTGQLPKFAEDSFRCAD---DDLW 230

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  +    +LP  F      FR E     R   G++R  +F  K   
Sbjct: 231 LIPTAEVPLTNLYRDEMIPAESLPLYFCAYTPCFRREAGSYGRDTKGLIRLHQF-QKVEL 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLADTG 217
                P+ S+  + K+      I   L L    +   SG +          E    +   
Sbjct: 290 VKVTRPDQSEAEHEKLVQDAEAILQMLELPYRVVELCSGDLGFAAARCFDLEVWFPSQNQ 349

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDII 243
             ++    +  DF     N  + +  
Sbjct: 350 YREISSCSNCWDFQARRANLRYKEAG 375


>gi|332357990|gb|EGJ35823.1| serine--tRNA ligase [Streptococcus sanguinis SK1056]
          Length = 425

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + +    +G+Y  + ++   L+D N
Sbjct: 165 FYKGLGARLERAIYNFMLDEHGKEGYTEVITPYMVNHNSMFGTGQYPKFKEDTFELSDTN 224

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 225 ---FVLIPTAEVPLTNYYRDEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYEELEKMT-ANAENILQKLNLPYRVVALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|163846039|ref|YP_001634083.1| seryl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222523768|ref|YP_002568238.1| seryl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
 gi|189083562|sp|A9WE34|SYS_CHLAA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|254783017|sp|B9LIV1|SYS_CHLSY RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|163667328|gb|ABY33694.1| seryl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222447647|gb|ACM51913.1| seryl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
          Length = 423

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 54/165 (32%), Gaps = 8/165 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
            Y     G +    V   + +     G  E+  P +    +   SG+   +   + R  +
Sbjct: 162 FYVMRGAGARLQRAVIQWLIDLHLEQGYQEVYTPFVVKESVLWASGQLPKFRDNLYRDEE 221

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                +   PT E  +T ++   I     LP         FR E     R   G+ R  +
Sbjct: 222 SG---LWLVPTAEVPLTSLYADEILDASQLPIYHVAYTPCFRKEQLSAGRDVRGIKRGHQ 278

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           F   + Y F  TP+ S  +  K+         RLGL        +
Sbjct: 279 FDKVEMYMFV-TPDQSYQALEKLRRDAEECARRLGLPFRTKLLCT 322


>gi|190574115|ref|YP_001971960.1| histidyl-tRNA synthetase [Stenotrophomonas maltophilia K279a]
 gi|229558745|sp|B2FPL6|SYH_STRMK RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|190012037|emb|CAQ45659.1| putative histidyl-tRNA synthetase [Stenotrophomonas maltophilia
           K279a]
          Length = 464

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 78/475 (16%), Positives = 135/475 (28%), Gaps = 72/475 (15%)

Query: 31  MIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDS 88
           MI  +   G    LP  Q A   +  +IR    R G + +  P  + +D L  +SG    
Sbjct: 1   MIKPRTPPGTLELLPREQIAFQRMLDVIRRNYERFGFLPVETPVFELSDVLLTKSGGETE 60

Query: 89  YGKEMLRLA----------DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                ++            DR+   M         +        +     PF  YQ+Q  
Sbjct: 61  RQVYFVQSTGALANAAESGDRSLPEMALRFDLTVPLARYVA-EHEHELTFPFRRYQMQRV 119

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE 198
           +R E   R    R REF   D           +    ++      +F  L +    ++  
Sbjct: 120 YRGERAQRG---RFREFYQCDIDVIGKDSLSVR-YDAEVLAVIHAVFSELRIGDFSIQLN 175

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS-----ENTDFDDIISLNSIVEQWT 253
           +  +      E + +A+ GE Q+   ++             E    +        VE+  
Sbjct: 176 NRKLMR-GFFESLGVAE-GERQLAVLREVDKLDKRGADYVRETLVGEGFEIPAEQVEKIL 233

Query: 254 APYAATSDVHNEKLFD-------------------------------SLPENKRVSARGI 282
           A  A  S  H + L                                  +PE        I
Sbjct: 234 AFVAVRSQGHADALAQLATLEADAGSSEILRTGVAELREVLQLVQALGVPETAYCLNFSI 293

Query: 283 EVGHIFYFGTKY-----------SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
             G  +Y GT Y           S+     ++         ++   GI            
Sbjct: 294 ARGLDYYTGTVYETTLTDHPQIGSICSGGRYEDLASHYSKSKLPGVGISIGLSRLFWQLR 353

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                  I   SV      +      D+        I  RL   G +       ++IG Q
Sbjct: 354 EAGLIDGIEGSSVQALVALM------DEQGMPQSLDIARRLRAGGINTEVQMEPKKIGKQ 407

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNNR 446
           F  A   G    V+ G   ++   V +K  L   + ++S + + +        ++
Sbjct: 408 FQYAAKAGIRFVVLAGEDELARGVVAVKDLLREQQFEVSRDGLASTLQVELEQSK 462


>gi|88703671|ref|ZP_01101387.1| Histidyl-tRNA synthetase [Congregibacter litoralis KT71]
 gi|88702385|gb|EAQ99488.1| Histidyl-tRNA synthetase [Congregibacter litoralis KT71]
          Length = 426

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 64/446 (14%), Positives = 114/446 (25%), Gaps = 68/446 (15%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        +   + E     G  E+ +P ++S+ L+  S G   D   KEM  
Sbjct: 9   GMNDILPADTSHWQYLERQVAELLECYGYGELRLPIVESSALFSRSIGEVTDIVEKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DRN  ++   P            +  +    P   +     FR E   +    R R+F
Sbjct: 69  FEDRNGDSISLRPEGTAGCVRAAIQNNLTAT--PCRLWYSGPMFRYERPQKG---RQRQF 123

Query: 156 LMKDAYSFDLTPEGSK---------------------------------HSYNKMFVSYL 182
               A  F      +                                   +Y    V YL
Sbjct: 124 HQIGAEIFGYATPDADAELIIFLARLWRILGIDDAVSLEINSIGSSEARANYRTALVGYL 183

Query: 183 RIFHRLGLKSIPMRAESGP--IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                        R E+ P  I    + +   L +          +       +     D
Sbjct: 184 EQRRESLDDDSQRRLETNPLRILDSKNPDTQALLNKAPALADYLDEESRTHFAALKGFLD 243

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
                 ++  +        +    E + D L     V A G   G +   G K +  +  
Sbjct: 244 GAGVDYTVNPRLVRGLDYYNKTVFEWVSDKLGAQGTVCAGGRYDGLVEQLGGKATPGVGF 303

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                         G       R     + ++ D        +V   + +          
Sbjct: 304 AMGMERLLLMLEACGQLP--EPRAPDLFVVATGDEAQTAAMAAVEGLRDARP-------- 353

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK- 419
                 +I  +L                 SQ   AD  G  L ++ G   V+  +V +K 
Sbjct: 354 ----ALRIVQQLGGGSFR-----------SQMKKADRSGAALALLWGEDEVAAGEVTVKP 398

Query: 420 HRLTGIREDMSLEEVINYASHRFSNN 445
            R    +  + +  +          +
Sbjct: 399 LRDGQEQTRVPVASLAGKIDTLLQQH 424


>gi|123966593|ref|YP_001011674.1| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
 gi|166222763|sp|A2BXQ6|SYS_PROM5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123200959|gb|ABM72567.1| Seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
          Length = 425

 Score = 70.2 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 73/194 (37%), Gaps = 12/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +   + +  +  G +E+  P L +++    SG+   +  E  +     +  +
Sbjct: 172 NGARLERALINFMLDVHSNNGYLELMPPALVNSESLQGSGQLPKFSNESFKC---ANDDL 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T   ++ I   + LP  +      FR E     R   G++R  +F   + 
Sbjct: 229 WLSPTAEVPLTAFHKNEIIDPKLLPLKYVAYSPCFRREAGSYGRDTKGLIRLHQFNKVEL 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF----IVLADT 216
           Y F   P  S  ++ ++      I  +L L    +   +G +G   S  F     + ++ 
Sbjct: 289 YWFS-DPNKSLEAHKEITADAESILKKLNLPYRLVDICTGDLGFSSSRTFDLEVWLPSNK 347

Query: 217 GETQVFCSKDFMDF 230
              ++    +  DF
Sbjct: 348 CYREISSCSNCRDF 361


>gi|196032274|ref|ZP_03099688.1| histidyl-tRNA synthetase [Bacillus cereus W]
 gi|195995025|gb|EDX58979.1| histidyl-tRNA synthetase [Bacillus cereus W]
          Length = 426

 Score = 70.2 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 69/433 (15%), Positives = 128/433 (29%), Gaps = 53/433 (12%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 12  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 71

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 72  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 126

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 127 VDIVGVESVMAEAELMSMAFELFQTLNLEVTIQYNNRKLLNGILQAINIPTELTSDVILS 186

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDF-DDIISLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT      +S+    E +  P  A      
Sbjct: 187 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLQLSIADFKEAFNNPLVADGVNEL 246

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           ++L   L       A GI    IF       L M                 S G G  R 
Sbjct: 247 QQLQQYL------IALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGG-RY 299

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARL 372
              +     D              +    +   + +   A            C +I  +L
Sbjct: 300 DNIIGAFRGDDMSYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGTELQCLQIAQQL 359

Query: 373 SK---VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                +  ++         G +   A    +    P  +I+G + +    V +++   G 
Sbjct: 360 RSTTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEEICTETVMLRNMKEGS 413

Query: 426 REDMSLEEVINYA 438
              + L  + NY 
Sbjct: 414 EVKVPLSSLSNYL 426


>gi|217967357|ref|YP_002352863.1| histidyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
 gi|226737069|sp|B8E1C1|SYH_DICTD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|217336456|gb|ACK42249.1| histidyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
          Length = 411

 Score = 69.8 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 56/416 (13%), Positives = 109/416 (26%), Gaps = 40/416 (9%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGR-YDSYGKEMLRL 96
           I  W          +  I R    +    E+  P  +  +L+   +G   D   KEM   
Sbjct: 17  IPFWH--------LIENIARSLFEKYNYEEIRTPIFEFTELFVKGTGETTDIVMKEMYTF 68

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  +++   P     +   +  +        +  Y I   FR E        R R+F 
Sbjct: 69  QDKKGRSLTLRPEGTPGVIRAYLMNKIYTTKPIWKVYYIGPMFRYERPQSG---RYRQFH 125

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                               + V  L+      L+                 E +     
Sbjct: 126 QLGVEVLGRKDPYIDFEVISLAVEILKSLKLENLEIEINSLGCLK-CRPAYREALKNYFY 184

Query: 217 GETQVFC---SKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH---------- 263
               +      +     P+   ++  + II L     Q           H          
Sbjct: 185 QYKDLLSPIDQERLERNPLRILDSKDEKIIPLKENAPQPLDFLCNDCKDHFDKVLRYLQE 244

Query: 264 ---NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
              N K+   L        R +        G + ++     +               G  
Sbjct: 245 ASLNFKISPKLVRGLDYYTRTVFEITTTSLGAQNAVVGGGRYDNLVETYGGPSTPGLGFA 304

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                  ++    D   I  P        SL  +   ++       +I   L  +   V 
Sbjct: 305 LGMERLILLIKQQDKIKIEKP--------SLFFLAIENEKYIKKAVEISKILR-INHRVE 355

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
                E + +Q   AD L     + + ++ +    + IK+  TG  +++ +E +  
Sbjct: 356 IGSPNEPLRTQLKWADKLNSDYVIFI-NQMIEKDILRIKNFKTGEEKEIRIENLKE 410


>gi|119357562|ref|YP_912206.1| seryl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
 gi|166228638|sp|A1BHA5|SYS_CHLPD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|119354911|gb|ABL65782.1| seryl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
          Length = 431

 Score = 69.8 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 76/214 (35%), Gaps = 13/214 (6%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
              G   ++  G +    +   + +   +  G  E+  P   + +    +G++  +  ++
Sbjct: 163 SGAGFPVYIGKGARLERALINFMLDYHTDHHGFTEVFPPFFVNQESLRGTGQWPKFADQV 222

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
             + + N   +   PT E  +T++ R+ +     LP ++      FR E     +   G 
Sbjct: 223 YHIEEDN---LYAIPTAEVPVTNLHRNEMIDAERLPVSYVAYSACFRREAGSYGKDTRGF 279

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +   F    E  +    K+ +S   I   L +    +   SG I  + +  
Sbjct: 280 LRVHQFNKVEMVKFTRPEESYQEL-EKILMSAEAILQALMIPYRVLLLCSGDISANATKC 338

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              E    A+    +     +F D+     N  F
Sbjct: 339 YDIEVWSPAEEKYLEASSCSNFEDYQARRMNIRF 372


>gi|330824025|ref|YP_004387328.1| histidyl-tRNA synthetase [Alicycliphilus denitrificans K601]
 gi|329309397|gb|AEB83812.1| Histidyl-tRNA synthetase [Alicycliphilus denitrificans K601]
          Length = 429

 Score = 69.8 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 69/426 (16%), Positives = 125/426 (29%), Gaps = 31/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      + +   +R    R     +  P ++   L+V   G   D   KEM  
Sbjct: 9   GMNDILPPESARWEWLEDTVRTLMARYAYRNIRTPIVEPTPLFVRGLGEVTDIVEKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +   +                     +     Y +   FR E   R    R R+F
Sbjct: 69  FEDRLNGEQLTLRPEATAGVVRAVVEHSMLYDGGKRLYYMGPMFRHERPQRG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF----- 210
               A +       +        +    ++  LGLK + +   S     +          
Sbjct: 126 HQIGAEALGFPGAEADAEI---ILLAHALWAELGLKDVRLELNSLGQPDERRAHRAALIA 182

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
            +     E      +     P+   +T    + ++     +        S  H E +   
Sbjct: 183 HLEQHQDELDEDARRRLHSNPLRILDTKNPAMQAVVEAAPRLIDFLGEASLKHFETVKAI 242

Query: 271 LPENKRVS------ARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           L  N           RG++     +F F T     + +      G  +   +   G    
Sbjct: 243 LDANGVAWSLNPRLVRGMDYYNLTVFEFVTD---QLGSQGTICGGGRYDYLIEQIGGKPA 299

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
             V   +      + I   ++ AP  ++       D            RL  +G  V   
Sbjct: 300 PAVGWALGVERVLELIKEQEAQAPRPVADAYAIVPDASALPVVMAALQRLRALGVSVQMH 359

Query: 383 D---MGEQIGSQ---FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVI 435
                GE +GS    F  AD  G    ++ G+  ++   V IK  R  G + +  L  + 
Sbjct: 360 SPTAAGEGMGSMKSQFKKADASGSRFALVFGADEMARGAVTIKPLRDGGEQVERPLATLA 419

Query: 436 NYASHR 441
           ++A+  
Sbjct: 420 DWAASL 425


>gi|320334430|ref|YP_004171141.1| Histidyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
 gi|319755719|gb|ADV67476.1| Histidyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
          Length = 428

 Score = 69.8 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 57/403 (14%), Positives = 113/403 (28%), Gaps = 21/403 (5%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKA-MIYGPT 109
           V  + R    R GA  M+ P  + A++      G  D   KEM  +  + +    +  P 
Sbjct: 32  VIGVARGVLERAGAQFMATPMFEEAEVVKRGVGGSTDIVRKEMFTVFYQGEHGGYVLRPE 91

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
               +   +  +       P   +     FR E   +    R R+F   D      T   
Sbjct: 92  GTAPIVRAYIQNGLKQLPAPLKLWTTGAMFRAERNQQG---RYRQFHQVDYEVLGSTDPL 148

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMD 229
                  + V  +      G+          P   +  + ++    T E +         
Sbjct: 149 VDAEAIALMVRVVEALGLTGVGVKLGSIGD-PEDRERYNAYLRELFTPERERLSGDSQDR 207

Query: 230 FPIPSENT-----DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV------- 277
                        D D  +     V+   A     +  H E +   L     V       
Sbjct: 208 LDRNPMRILDSKSDEDQRLIAGLHVQPMLAFLGEEARAHFEVVQGYL-RAWGVPFEVDPS 266

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RG++      +   ++   + +  G  G+   +     G     +  A          
Sbjct: 267 IVRGLDYYRRTAWELHHAHIGAKSALGGGGRYDGLAAQLGGPETPGIGWAFGVERLLIAM 326

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
                 +       + + A D        ++   L      V +     + G+ F  AD 
Sbjct: 327 EQEGLVIPEPDGPALFLAAMDAENVPLVARVAMELR-ADAHVEFAYRAMKPGAAFKEADR 385

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                  +VGS   +   + +K   +G + D+ L ++  + + 
Sbjct: 386 KRARYAAVVGSNEAATGVLRVKALASGAQADVPLADLAAFLAQ 428


>gi|312898436|ref|ZP_07757826.1| seryl-tRNA synthetase [Megasphaera micronuciformis F0359]
 gi|310620355|gb|EFQ03925.1| seryl-tRNA synthetase [Megasphaera micronuciformis F0359]
          Length = 425

 Score = 69.8 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 11/190 (5%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRY 86
           R G +       Y +L  G +    V   + +      G  E+  P + + D  + +G+ 
Sbjct: 153 RAGKV--AGSRFYFYLGAGARLERAVYNFMLDMHTEVDGYTEVIPPYIVNRDSMLGTGQL 210

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
             + ++M R+     + M   PT E  +T+ +R  I     LP     +   FR E    
Sbjct: 211 PKFYEDMFRIE---GQEMFMIPTAEVPLTNYYRGEIIDGNKLPVYLTAMTPCFRAEAGSA 267

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +   +           +K+  +   I   L L    +   +G I
Sbjct: 268 GRDTRGLIRQHQFHKVEMVKYVAPETSYDEL-DKLTNNAEAILQALKLPYHVVCLCTGDI 326

Query: 203 GGDLSHEFIV 212
           G   +  F V
Sbjct: 327 GFSAAKTFDV 336


>gi|89096141|ref|ZP_01169034.1| histidyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89088995|gb|EAR68103.1| histidyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 430

 Score = 69.8 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 59/420 (14%), Positives = 124/420 (29%), Gaps = 50/420 (11%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADR 99
            +LP  +     +   + +   + G   +  P L   +L   + G      +EM  L+DR
Sbjct: 14  DYLPEEEIVRRRIQRELEDVFIQYGCKPLETPILNYTELLASKYGGGAEILEEMYTLSDR 73

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +                 +     LPF  Y+I   FRD         R REF    
Sbjct: 74  GGRDLALRYDLTIPFAKAAA--MNPGIRLPFKRYEIGRVFRDGPIKTG---RLREFTQCA 128

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                   + ++         ++ RI   + ++    +  SG +      EF VL +   
Sbjct: 129 VDIAGADSQLAEAELMVMALDAFQRIGLDITIQYNNRKLLSGMLQ-----EFGVLEEKRN 183

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP----------YAATSDVHNEKLF 268
             +              + +          +++              Y    +  N  L 
Sbjct: 184 EAILVLDKLEKAGWQKVSEELAAKGIGYEAIQRIAGFISDKNIGKLAYYEEMEDKNVHLK 243

Query: 269 DSLPENKRVSA------------------RGIEVGHIFYFGTKYSLPMSATFKGADGKDH 310
           + L E   +                    RG+++     +    +    A+  G+ G+  
Sbjct: 244 EGLQELMELEGYLNYLNSSRKAVFNPFLARGLDIYTGTIYEIFLTDRSLASSIGSGGRYD 303

Query: 311 YVQMGSYGIGAMRVVAAVIE-----SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDAC 365
               G  G G       +        +   + + W +  +     +I I    +      
Sbjct: 304 NAIGGFIGSGKKVATVGISFGLDAIFTAVSQSLSWTERESTADYFIIPINTPKESL---- 359

Query: 366 EKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
             +   L + G  V  +    +I      A+       +++G + VS+++ ++K   TG 
Sbjct: 360 -ALAQYLREKGWRVELELGSRKISKALERANKENIRKVILLGEEEVSNNQYKVKDMETGE 418


>gi|332665948|ref|YP_004448736.1| seryl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
 gi|332334762|gb|AEE51863.1| seryl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
          Length = 425

 Score = 69.8 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 70/223 (31%), Gaps = 11/223 (4%)

Query: 26  MLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGR 85
            L  G +     G   +   G K    +     +E +  G  E+  P + + D    +G+
Sbjct: 155 DLELG-VKLTGAGFPVYRGKGAKLERALINFFLDEASAAGYEEIIPPLMVNEDSARGTGQ 213

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
                 +M  +   N   +   PT E  +T+I+R  I     LP         FR E   
Sbjct: 214 LPDKEAQMYHVTLDN---LYLIPTAEVPVTNIYRDEILDAAALPIKMTAYTPCFRREAGS 270

Query: 146 RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF---HRLGLKSIPMRAESGPI 202
               +R    + +      +       SY+ +      +    ++LGL    +R   G +
Sbjct: 271 YGAHVRGLNRVHQFDKIEIVQIVHPDKSYDTLMEMLEHVAGLLNKLGLPFRILRLCGGDM 330

Query: 203 GG----DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
           G         E    A     +V    +F  F        F +
Sbjct: 331 GFTSALTFDFEVWSAAQKRWLEVSSVSNFETFQSNRMKMRFRE 373


>gi|312129379|ref|YP_003996719.1| histidyl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
 gi|311905925|gb|ADQ16366.1| histidyl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
          Length = 454

 Score = 69.8 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 42/100 (42%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
                 +  + + +    +    +   I + +   G          ++  QF  AD  G 
Sbjct: 355 FPEALNYSSTSVMVTNFGEDTLASSLGILSEIRNAGISAEIYPDSAKMKKQFEYADKKGI 414

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           P  VIVG++ +   + ++K+ + G +  +SL+++I+  + 
Sbjct: 415 PFVVIVGTEEIEKGQYQLKNMINGEQSALSLQDIIHKVND 454


>gi|209881101|ref|XP_002141989.1| histidyl-tRNA synthetase family protein [Cryptosporidium muris
           RN66]
 gi|209557595|gb|EEA07640.1| histidyl-tRNA synthetase family protein [Cryptosporidium muris
           RN66]
          Length = 977

 Score = 69.8 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 60/461 (13%), Positives = 124/461 (26%), Gaps = 67/461 (14%)

Query: 44  PLG--------QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           P G            + +   IR      GA+E+  P  +  D  +  G+Y    K +  
Sbjct: 507 PKGTQDIPPQKMVIRNVIFDTIRSIFRSHGAVEIDTPIFELRDTLI--GKYGEDSKLIYD 564

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +         +         S        +QI   +R +  P+    R REF
Sbjct: 565 LKDQGGEQLSLRYDLTVPLARYIA----SAGLENLKRFQIGKVYRRD-EPQMSRGRYREF 619

Query: 156 LMKDAYSFDLTPEG--SKHSYNKMFVSYLRIFHRLGLK----------------SIPMRA 197
              D     +                        +G                      +A
Sbjct: 620 YQCDLDICGIYEAMTTDVEILKIATDILNAFSPWIGSFIIKINHRSLLDGLLIVCGVPKA 679

Query: 198 ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP----------SENTDFDDIISLNS 247
           +   I   +        ++ + ++   K   +              +       +     
Sbjct: 680 KIRTICSSIDKLDKESWESVKKEMVTLKGLSEEVADKIGNYIKFSGAPGEVLTKVKQCEE 739

Query: 248 IVEQWTAPYAATSDVHNEKLFDSLPENKRVSA-----RGIEVGH------IFYFGTKYSL 296
           ++       A +  V      D++   + +S      RG++         +   G   S+
Sbjct: 740 LINNEDIKLAISDMVLLFSYTDAVGCTEHLSFDLSLARGLDYYTGIIYEAVLTSGNVGSI 799

Query: 297 PMSATFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
                +    G      + + G   G  R++  + +        +    +       +  
Sbjct: 800 AAGGRYDNLIGMFSQKNIPAVGFSVGVERIMNIIEKKLETNTRQLSNKIIRGSFTEFLIC 859

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
              D +      K+ + L   G           ++  Q   A     P  +IVG   V  
Sbjct: 860 TIGDILVTHK-LKLASMLWTNGISAEISPSSNAKLRKQLEYAASKQIPFCIIVGEDEVKR 918

Query: 414 SKVEIK--HRLT-------GIREDMSLEEVINYASHRFSNN 445
           + V+I+  +  T        I E++SL  +I+      S  
Sbjct: 919 NTVQIRQVNLDTHIDKSQVRISEEVSLNSLISRVKDIISKY 959


>gi|154496106|ref|ZP_02034802.1| hypothetical protein BACCAP_00390 [Bacteroides capillosus ATCC
           29799]
 gi|150274661|gb|EDN01725.1| hypothetical protein BACCAP_00390 [Bacteroides capillosus ATCC
           29799]
          Length = 465

 Score = 69.8 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 67/470 (14%), Positives = 128/470 (27%), Gaps = 74/470 (15%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP  Q   D + AI+RE     G   +  P ++++++ +  G  ++  +     
Sbjct: 10  SGFMELLPADQVLFDRMVAILRESYALYGFTPLDTPAIEASEVLLAKGGGETEKQIYRFQ 69

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
              +D ++ +  T           +  S    PF  +QI   +R E   R    R REF 
Sbjct: 70  KGDSDLSLRFDLTVPLAKYVALHYNELS---FPFRRFQIGKVYRGERAQRG---RFREFY 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIF------------------------------- 185
             D            +      + Y                                   
Sbjct: 124 QADIDVIGDGKLDIINEAEIPSIIYRAFTALGLRRFKIRVNNRMVLNGLFALLGLEQQAG 183

Query: 186 HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV----FCSKDFMDFPIPSENTDFDD 241
             +       +     +   L  +F V ADT +T +             P   +N  FD 
Sbjct: 184 DVMRTIDKLEKIGPDKVKAILVDDFAVSADTADTLLSLLSAADPMAALEPFKGKNELFDL 243

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
            +   + V ++ A +   +D     L  +           +    +       S+     
Sbjct: 244 GVEELNTVVKYMAAFGVPADHFMVDLTIA--RGLDYYTGTVYETVMLDHPEVGSICSGGR 301

Query: 302 FKG--ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ 359
           +        D  +      IG  R+   V++            +                
Sbjct: 302 YDNLAEYYTDKQLPGVGISIGLTRLFY-VLQEQKMLNASNAAPADVLILPMT-------- 352

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
               A       L   G         ++   +   A+ L  P    +G   V    V +K
Sbjct: 353 EDLSAAISFATALRAQGVRAQLHCEQKKFKQKLNYANKLSIPFAAFLGEDEVKAGTVTVK 412

Query: 420 HRLTGI-----------------REDMSLEEVINYASHRFS---NNRPVL 449
           + L G                  +  + + E ++Y  +  S   ++RP+L
Sbjct: 413 NLLMGDDFTEEEKADMESQGFFKQVTLPVAEAVSYVKNCLSDPKDDRPIL 462


>gi|254430508|ref|ZP_05044211.1| seryl-tRNA synthetase [Cyanobium sp. PCC 7001]
 gi|197624961|gb|EDY37520.1| seryl-tRNA synthetase [Cyanobium sp. PCC 7001]
          Length = 425

 Score = 69.8 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 65/176 (36%), Gaps = 8/176 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + L  G +    + + + +     G  E+  P L ++     SG+   + +E  R + 
Sbjct: 166 FVTLLGQGARLERALISFMLDRHGSRGYTEVMPPILVNSASLTASGQLPKFAEESFRCS- 224

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                +   PT E  +T + R  +     LP  +      FR E     R   G++R  +
Sbjct: 225 --GDDLWLTPTAEVPLTSLHRDEVIPAEQLPLKYCAYTPCFRREAGSYGRDTRGLIRLHQ 282

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           F   + Y F   P+ S  ++ ++      I   L L    +   +G +G   +  F
Sbjct: 283 FNKVELYWF-TRPDHSAEAHEQITSDAEAILEALELPYRRIELCTGDLGFSAARTF 337


>gi|290579784|ref|YP_003484176.1| putative seryl-tRNA synthetase [Streptococcus mutans NN2025]
 gi|254996683|dbj|BAH87284.1| putative seryl-tRNA synthetase [Streptococcus mutans NN2025]
          Length = 426

 Score = 69.8 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 74/209 (35%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DNDYVLIPTAEVPLTNYYRGEIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +           +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEDSYNELEKMT-ANAENILQKLELPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|229162206|ref|ZP_04290175.1| Histidyl-tRNA synthetase 1 [Bacillus cereus R309803]
 gi|228621256|gb|EEK78113.1| Histidyl-tRNA synthetase 1 [Bacillus cereus R309803]
          Length = 436

 Score = 69.8 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 67/422 (15%), Positives = 132/422 (31%), Gaps = 35/422 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   + G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFEQYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRELALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  + + + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILQAINIPTERTSDVILS 185

Query: 214 ADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            D  E        KD ++  I  E  D      L+ +              +N+ + D +
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADF---KEAFNNQLVTDGV 242

Query: 272 PENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            E +++       GI    IF       L M                 S G G  R    
Sbjct: 243 NELQQLQQYLIALGISENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGG-RYDNI 301

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLSKV 375
           +     D              +    +   + +   A            C +I  +L   
Sbjct: 302 IGAFRGDNMNYPTVGISFGLDVIYTALSQKETISSTADLFIIPLGTELPCLQIAQQLRST 361

Query: 376 -GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V  +  G ++      A+    P  +I+G + +S + V +++   G    + L  +
Sbjct: 362 TSLKVELELAGRKLKRALNYANKENIPYVLIIGEEELSTNTVMLRNMKEGSEVKVPLSSL 421

Query: 435 IN 436
            N
Sbjct: 422 KN 423


>gi|189466841|ref|ZP_03015626.1| hypothetical protein BACINT_03217 [Bacteroides intestinalis DSM
           17393]
 gi|189435105|gb|EDV04090.1| hypothetical protein BACINT_03217 [Bacteroides intestinalis DSM
           17393]
          Length = 454

 Score = 69.8 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 5/129 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ I   ++        I A++ 
Sbjct: 329 FGMAGVSGVGISFGADRIFDVLNQLDLYPKEAVNSTQLLFINFGEKEA-AYSLNILAKVR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G       D    ++  Q + A+    P   +VG   ++++KV +K+  TG +  +S 
Sbjct: 388 AEGIRAEIFPDSS--KMKKQMSYANAKNIPFVALVGENEMNENKVTLKNMETGEQSLVSA 445

Query: 432 EEVINYASH 440
           EE+I     
Sbjct: 446 EELIQTLKK 454


>gi|189218097|ref|YP_001938739.1| Histidyl-tRNA synthetase [Methylacidiphilum infernorum V4]
 gi|189184955|gb|ACD82140.1| Histidyl-tRNA synthetase [Methylacidiphilum infernorum V4]
          Length = 405

 Score = 69.8 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 60/415 (14%), Positives = 117/415 (28%), Gaps = 25/415 (6%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
            G   + P      + + +  RE   R   +E   P L++ +L+  +SG  D    ++  
Sbjct: 5   PGFRDFYPSDCAFRNFIFSRWRESCRRFNFVEYDGPLLETIELYQKKSG--DEILSQIYH 62

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+  + +   P     +  +  +H K Y+  P  ++ I   FR E   +    R RE 
Sbjct: 63  FIDKGSRHVALRPEMTPTLARMIEAHFKEYKK-PIKWFSIPQLFRYERAQKG---RLREH 118

Query: 156 LMKDAYSF-DLTPEGSKHSYNKMFVSYLRIF--------HRLGLKSIPMRAESGPIGGDL 206
              +     +   E      N      L                       +   I  D 
Sbjct: 119 YQLNCDIVGEADLEADIELINLAIDILLSFDLGKDDFVVRVSDRLFWTEFLKKKAIPRDD 178

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
            + F    D  E +     +     +  E     +        E                
Sbjct: 179 WYAFFQAIDKIEREPREEIERRLGDLAKEVFAILESPPCWERFEILLEGLRHRGLAEYVC 238

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
           +   +         GI        G   ++     +     +     + + G G   VV 
Sbjct: 239 IDLGIVRG-LAYYTGIVYEIFDRAGEFRAIAGGGRYDDLLKQIGGEDIPAAGFGMGDVVL 297

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
             I          +P         +      +         +  +L + G  V +     
Sbjct: 298 GEIIRKKKVIEPSFP---RLDVYVVFPEGKKNPQGLF----LIEQLRRQGFSVDFSFCPS 350

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           ++  Q A A  L     +IV  K + +  VEIK+     +  + +E++  +   R
Sbjct: 351 KLKKQLATAQSLNARFALIVSDK-IEEGVVEIKNMDERTQLTLPVEQLAGWLKER 404


>gi|229581614|ref|YP_002840013.1| histidyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
 gi|259511963|sp|C3NFX3|SYH_SULIN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|228012330|gb|ACP48091.1| histidyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
          Length = 426

 Score = 69.8 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 47/415 (11%), Positives = 127/415 (30%), Gaps = 31/415 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
           +  + +  R+   + G  E+  P ++   L+   G  +   + M    D+ D+ +   P 
Sbjct: 21  IRYLESTFRDLAIKYGYSEIITPVVEEFKLFALKG-GEELRETMYVFKDKADRELSLRPE 79

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
               +   +  +++S       FY   +   DE  P++G  R  EF          +   
Sbjct: 80  ITPSVARAYIQNLQSSPKPIRLFYFGTVYRYDE--PQYGRYR--EFRQAGIEMIGDSSIL 135

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFM 228
           +      +   Y           I ++  +  I   +  ++ +  +  E  +    K+ +
Sbjct: 136 ADLEVLDLL--YNFYDKLNLSNDITIKINNIGIFRKIMDKYNIEDNLQEHILHLIDKNKI 193

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--------------- 273
           +  +     +  +   ++   +  T       D+ +    + +                 
Sbjct: 194 NEALDILEKNLKNKDIIDFFYKILTKKDTKLEDIESLAELEEVSRLDIKSEFLYLFRLSR 253

Query: 274 ------NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                  K     G   G  +Y G  +   +  + + +              G +   A 
Sbjct: 254 ILSDLNIKFKIDLGFVRGLAYYTGLIF-EVLHPSVQFSIAGGGRYDKLIELYGGLPSPAI 312

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                 +   ++  D      +++I I   +         +   L K    V  +   + 
Sbjct: 313 GFAIGVERTLLVIKDLKVEEPVNVIVIGMSEDTIPSM-FMVSRILRKEEYKVVINTKDQP 371

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +          GF + +I+G + +  + + +++ +T  +  + LE + +      
Sbjct: 372 LSKLLPYYASQGFKVAIIIGKQELEKNMITVRNLITRKQISVPLENIEDAIKQTL 426


>gi|66825929|ref|XP_646319.1| histidine-tRNA ligase [Dictyostelium discoideum AX4]
 gi|74997419|sp|Q55D12|SYHM_DICDI RecName: Full=Probable histidyl-tRNA synthetase, mitochondrial;
           AltName: Full=Histidine--tRNA ligase; Short=HisRS;
           Flags: Precursor
 gi|60474324|gb|EAL72261.1| histidine-tRNA ligase [Dictyostelium discoideum AX4]
          Length = 501

 Score = 69.8 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 58/442 (13%), Positives = 125/442 (28%), Gaps = 46/442 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y   P  Q+    +  + R    R G  E+S P ++  +L+  S     D   KEM +
Sbjct: 61  GTYDLFPNEQRIHKFIFDVGRGVAERYGFKEISTPIIEPFELFNRSVGESSDIVMKEMFK 120

Query: 96  LADRNDKAMIYGPTHE-------EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             D ++++                V+  I      ++      +Y     FR E   R  
Sbjct: 121 FKDYSNESSSPPSMICLRPEGTAGVIRAIINQSSTNHLTPAQRYYYQGPMFRYERPQRGR 180

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             +  +  ++         +         F+  L I     L  I    ++  I   + +
Sbjct: 181 QRQFHQLGVELIGDQHPRSDVEIIDMAMNFIERLGINKSDTLLKINSLGDTDSI--KVYN 238

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           E +                      +     D     +  + +       +  +  +  F
Sbjct: 239 ETLKRFYNDNVNKLSPISIKRLERGNSLRILDSKERQDIELNKLAPSIQDSLSIQCKDRF 298

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK--------GADGKDHYVQMGSYGIG 320
           +++ +         E+      G  Y        +            +    Q G   +G
Sbjct: 299 NNVLKGLDCLGISYEIDKSLVRGLDYYRHTIFEIQIIDNNQNNKGQRQQQQQQQGLAILG 358

Query: 321 AMRV-------------VAAVIESSHDGKGIIWPDSVAPFKISLINIK--AHDQVCRDAC 365
             R              +   I  +   + ++     +    S+  I     D    +  
Sbjct: 359 GGRYDGLANQLGYKYKEILPSIGWASGIERMVLFLDQSKIPNSIRPIGIAITDSSLSENA 418

Query: 366 EKIYARLSKVGCDVFW---DDMGEQIG---SQFAVADLLGFP-LQVIVGSKFVSDSKVEI 418
            K+ + L + G        +   E +     +F        P   +I+     S++ V I
Sbjct: 419 FKLCSNLRRNGWSSTLSTFNLEDENLSKQLKKFKNN-----PSFVIILAPSEYSNNTVII 473

Query: 419 KHRLTGIREDMSLEEVINYASH 440
           K+     +  + L E+ N+  +
Sbjct: 474 KNMDDTTQSIIPLNEIDNFLEN 495


>gi|332297974|ref|YP_004439896.1| Histidyl-tRNA synthetase [Treponema brennaborense DSM 12168]
 gi|332181077|gb|AEE16765.1| Histidyl-tRNA synthetase [Treponema brennaborense DSM 12168]
          Length = 435

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 59/440 (13%), Positives = 127/440 (28%), Gaps = 55/440 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW--VESGRYDSYGKEMLR 95
           G   +LP  +     +   +       G + +  P L+ A++     SG  +    ++ R
Sbjct: 12  GFRDFLPEAEITRSALIEKLTAAFRSFGYVPIDTPVLEYAEILLRKSSGETEK---QVFR 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D   + +                  K     PF  Y I   +R E        R REF
Sbjct: 69  FEDNGGRDVALRFDLTVPFARFTA-EHKDELYFPFKRYHIAKVWRGEKPQAG---RYREF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVS------YLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
           +  D                 +  +         +  R+  + +  R  +     + S +
Sbjct: 125 VQCDFDCVGSDSAACDFEILALMKTALSVIGVEDVTIRMSHRGVFNRFLANRGLTEKSED 184

Query: 210 FIVLADT----------------------GETQV--FCSKDFMDFPIPSENTDFDDIISL 245
            +   D                        E  V     +   +  +             
Sbjct: 185 ILRTVDKLAKIGRDEVIAQLTDSTGSAVLAEDIVSYIGMEATFEATLAHMEKMAGGEADD 244

Query: 246 NSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
              +    A   A     +  L  S+          +    +    +  S+     +   
Sbjct: 245 TRRLRDIRAMMEAAGIADSFVLDPSITRGLDYYTGVVYETFLNALPSIGSVCSGGRYDNL 304

Query: 306 DGKDHYVQMGSYG--IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD 363
            G     ++   G  IG  R++A + +         +  +              D     
Sbjct: 305 AGLYMKDRVPGVGSSIGLDRLIAGLDQLGALEHKKSYVQAEIFCL---------DAALAA 355

Query: 364 ACEKIYARLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
             +K+ ++L   G   +VF D   ++IG+Q+AVA+  G P  +++  +    + + +K+ 
Sbjct: 356 HYQKVASQLRAAGIACEVFPD--AKKIGAQYAVAEKKGVPFGILIKPEDAERNVLTLKNL 413

Query: 422 LTGIRED-MSLEEVINYASH 440
            T  + D +S+ + +     
Sbjct: 414 TTREQFDGISVRDAVACIGE 433


>gi|229156923|ref|ZP_04285004.1| Histidyl-tRNA synthetase 1 [Bacillus cereus ATCC 4342]
 gi|228626413|gb|EEK83159.1| Histidyl-tRNA synthetase 1 [Bacillus cereus ATCC 4342]
          Length = 428

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/429 (13%), Positives = 130/429 (30%), Gaps = 45/429 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 14  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDK 73

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 74  GKRELALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 128

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 129 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILQAINIPTELTSDVILS 188

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPY---AATSD 261
            D  E          V       +      NT    +  ++    E +  P         
Sbjct: 189 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADFKEAFNNPLVADGVNEL 248

Query: 262 VHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++   +L  N+         RG+ +     +          +  G+ G+   +    
Sbjct: 249 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAF 308

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-- 374
           +G         +          +           +  I    ++    C +I  +L    
Sbjct: 309 HGDNMNYPTVGISFGLDVIYTALSQKETVSSTADIFIIPLGTEIQ---CLQIAQQLRSTT 365

Query: 375 -VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +  ++         G +   A    +    P  +I+G + +S     +++   G    +
Sbjct: 366 SLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTETAMLRNMKEGSEVKV 419

Query: 430 SLEEVINYA 438
            L  + NY 
Sbjct: 420 PLSSLSNYL 428


>gi|326559233|gb|EGE09664.1| histidyl-tRNA synthetase [Moraxella catarrhalis 46P47B1]
          Length = 422

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/419 (12%), Positives = 110/419 (26%), Gaps = 44/419 (10%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR----- 95
           LP    A   +   + E  +  G  ++ +P ++   L+        D   KEM       
Sbjct: 14  LPEQTPAWRAMERTLIEVMDSYGYSQIRLPLVEETQLFARGVGEATDIVEKEMFGVVHGG 73

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
                  +    P            H  +  + P  +Y     FR E   +    R R+F
Sbjct: 74  NKGDEGSSFTLRPEGTAGCVRAIVEHNLTRGDTPKLWYL-GPMFRYERPQKG---RYRQF 129

Query: 156 LMKDAYSFDLTPEGSKH----SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI 211
                  F      +          M+       H     +     +          E++
Sbjct: 130 HQLGVEYFGAELPDADAELIAMTYHMWQKLGIGEHVTLQLNTLGETDERVAYKSALVEYL 189

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL---- 267
                        +     P+   ++  ++   +     +        S  H EK+    
Sbjct: 190 TTHQEALDDD-SKRRLNTNPLRILDSKDENTQQILKNAPKLGEFLGEASLAHFEKVQNYL 248

Query: 268 ---------FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGK-----DHYVQ 313
                     D L        + +        G++ ++     + G  G      +    
Sbjct: 249 SALGISFEINDKLVRGLDYYNKTVFEWVTDKLGSQATVCGGGRYDGLVGIIKGNAEQSEP 308

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
              + +G  R++  +   +           V       I             E +  RL 
Sbjct: 309 AVGFAMGLERLMLLIDAVNPYQVASWCDVFVIAHPDYYI-------DGLKYAESL--RLR 359

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           +    +        + SQ   AD  G    VI+    V+ +++ IK   TG +    ++
Sbjct: 360 QDNLRIKM-ASATGLKSQMKKADKSGAAYTVIIAEDEVNANQITIKTMATGEQRRAPID 417


>gi|297806295|ref|XP_002871031.1| histidyl-tRNA synthetase 1 [Arabidopsis lyrata subsp. lyrata]
 gi|297316868|gb|EFH47290.1| histidyl-tRNA synthetase 1 [Arabidopsis lyrata subsp. lyrata]
          Length = 486

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 59/415 (14%), Positives = 132/415 (31%), Gaps = 33/415 (7%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDK 102
           P   +  + +    +E     G  E+  P L++  L+  ++G  +    ++    DR ++
Sbjct: 80  PEDMRLRNWLFNHFKEVSRLFGYEEVDFPVLETEALFIRKAG--EEIRDQLYCFEDRGNR 137

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +   P     +  +     KS  +LP  ++ +   +R E   R    R RE    +   
Sbjct: 138 RVALRPELTPSLARLVIQKGKS-VSLPLKWFAVGQCWRYERMTRG---RRREHYQWNMDI 193

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP--MRAESGPIGGDLSHEFIVLADTGETQ 220
             +    ++    ++  S +  F R+G+ +     +  S  +  +L  ++ V  D     
Sbjct: 194 IGVPEVTAEA---ELISSIVTFFKRIGITASDVGFKVSSRKVLQELLKKYGVPEDLFGRV 250

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL----FDSLPENKR 276
                     PI     +          +EQ     +  S    E +     +++ + K+
Sbjct: 251 CIIIDKIEKIPIDEIKKELGFTGVSEDAIEQLLQVLSVKSLDDLEDILGGAGEAIADLKQ 310

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG--SYGIGAMRV---------- 324
           + +   + G+  +     S+     +      + + + G      G  R           
Sbjct: 311 LFSLAEKFGYSEWIQFDASVVRGLAYYTGIVFEGFDRKGKLRAICGGGRYDRLLSTYGGD 370

Query: 325 -VAAVIESSHDGKGIIWPDSVAPFKISLI----NIKAHDQVCRDACEKIYARLSKVGCDV 379
            + A      D   +                   + A D+  + A   +   L   G  V
Sbjct: 371 DIPACGFGFGDAVIVELLKEKDLLPELGQEVENIVCALDKDLQGAAATVATTLRDKGQTV 430

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
                 + +   F  A  +     V+VG     D  V +K   +G +  + L ++
Sbjct: 431 DLVLESKPLKWVFKRAARVNARRLVLVGKTEWEDGSVSVKVLSSGEQFQVKLNDL 485


>gi|196043116|ref|ZP_03110355.1| histidyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|229185569|ref|ZP_04312749.1| Histidyl-tRNA synthetase 1 [Bacillus cereus BGSC 6E1]
 gi|196026600|gb|EDX65268.1| histidyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|228597964|gb|EEK55604.1| Histidyl-tRNA synthetase 1 [Bacillus cereus BGSC 6E1]
          Length = 425

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 69/423 (16%), Positives = 132/423 (31%), Gaps = 33/423 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  P L   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPMLNMYELMSYKYGGGDEILKEIYTLRDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ES  I  + + + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILESINIPTERTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDF-DDIISLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT      +S++   + +  P  A      
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLQLSIDDFKDAFNTPLVAEGVNEL 245

Query: 265 EKLFDSLP----ENKRVSARGIEVGHIFYFGTKYS---LPMSATFKGADGKDHYVQMGSY 317
           ++L   L         +    +  G   Y GT Y       S T     G  +   +G++
Sbjct: 246 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAF 305

Query: 318 GIGAMRVVAAVIESSHD-GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
               M      I    D     +           +  I    ++    C +I  +L    
Sbjct: 306 RGDNMSYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGTELH---CLQIAQQLRSTT 362

Query: 377 -CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V  +  G ++      A+    P  +I+G + +    V +++   G    + L  + 
Sbjct: 363 TLKVELELAGRKLKRALNYANKENIPYVLIIGEEEICTETVMLRNMKEGSEVKVPLSSLS 422

Query: 436 NYA 438
           NY 
Sbjct: 423 NYL 425


>gi|24380240|ref|NP_722195.1| seryl-tRNA synthetase [Streptococcus mutans UA159]
 gi|30173154|sp|Q8DSB7|SYS_STRMU RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|24378250|gb|AAN59501.1|AE015015_1 putative seryl-tRNA synthetase [Streptococcus mutans UA159]
          Length = 426

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 74/209 (35%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKGLGARLERAIYNFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DNDYVLIPTAEVPLTNYYRGEIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +           +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEDSYNELEKMT-ANAENILQKLELPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|330996682|ref|ZP_08320560.1| histidine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329572754|gb|EGG54387.1| histidine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 454

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 2/158 (1%)

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
             G IF          S T  G    +     G  G+  + +             +    
Sbjct: 299 YTGCIFEVKALDVEIGSIT-GGGRYDNLTGIFGMPGVSGVGISFGADRIFDVLNQLDLYP 357

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
                   L+ +          C  + A+  + G          ++  Q + A+    P 
Sbjct: 358 KETVTGTELLFVNFGAAEA-AYCLPVMAQARRAGVRCEIYPDSAKMKKQMSYANAKAVPF 416

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             IVG   +++ KV +K+  TG +  ++ +E+IN    
Sbjct: 417 VAIVGENEMNEGKVTLKNMETGEQSLLTPDEMINIIKK 454


>gi|254673333|emb|CBA08521.1| Histidyl-tRNA synthetase [Neisseria meningitidis alpha275]
 gi|325132267|gb|EGC54960.1| histidyl-tRNA synthetase [Neisseria meningitidis M6190]
 gi|325137762|gb|EGC60337.1| histidyl-tRNA synthetase [Neisseria meningitidis ES14902]
 gi|325206315|gb|ADZ01768.1| histidyl-tRNA synthetase [Neisseria meningitidis M04-240196]
          Length = 431

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 114/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVNRWTRAYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEDKLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGERA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++ E++ +    
Sbjct: 414 QTVAAEDLTHTLQQ 427


>gi|2392059|pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine
 gi|2392061|pdb|1ADJ|B Chain B, Histidyl-Trna Synthetase In Complex With Histidine
 gi|2392063|pdb|1ADJ|C Chain C, Histidyl-Trna Synthetase In Complex With Histidine
 gi|2392065|pdb|1ADJ|D Chain D, Histidyl-Trna Synthetase In Complex With Histidine
 gi|2392067|pdb|1ADY|A Chain A, Histidyl-Trna Synthetase In Complex With
           Histidyl-Adenylate
 gi|2392068|pdb|1ADY|B Chain B, Histidyl-Trna Synthetase In Complex With
           Histidyl-Adenylate
 gi|2392069|pdb|1ADY|C Chain C, Histidyl-Trna Synthetase In Complex With
           Histidyl-Adenylate
 gi|2392070|pdb|1ADY|D Chain D, Histidyl-Trna Synthetase In Complex With
           Histidyl-Adenylate
 gi|14719709|pdb|1H4V|B Chain B, Histidyl-Trna Synthetase From Thermus Thermophilus (Ligand
           Free)
          Length = 421

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/409 (13%), Positives = 110/409 (26%), Gaps = 18/409 (4%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAM 104
            +    + A  R+     GA+E+  P  +   ++ +      D   KEM    DR  +++
Sbjct: 17  LRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSL 76

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SF 163
              P     M   +  H       P   +     FR E   +    R R+F   +     
Sbjct: 77  TLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKG---RYRQFHQVNYEALG 133

Query: 164 DLTPEGSKHSYNKMFVSYLRIFHRL--------GLKSIPMRAESGPIGGDLSHEFIVLAD 215
              P     +   ++     +  R         G      R  +        H   +  D
Sbjct: 134 SENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLREVLSPHREALSED 193

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNS--IVEQWTAPYAATSDVHNEKLFDSLPE 273
           + E         +D     +     ++        + +    +    + H E+L     E
Sbjct: 194 SKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKEVERHLERLSVPY-E 252

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
            +    RG++      F   +    + +  G  G+   +     G     V  A      
Sbjct: 253 LEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVPGVGFAFGVERV 312

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                     +   K   + +    +        +   L        +     +      
Sbjct: 313 ALALEAEGFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALRPR-LRAEYALAPRKPAKGLE 371

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            A   G      +G   +   +V +K   TG +  +S EEV  Y     
Sbjct: 372 EALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQAL 420


>gi|224159055|ref|XP_002197555.1| PREDICTED: similar to glutamyl-prolyl-tRNA synthetase, partial
           [Taeniopygia guttata]
          Length = 166

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 5/144 (3%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQS-ADLWVESGRYDSYGKEMLR 95
            G Y   P      + +      E  + G      P   S A L  E      +  E+  
Sbjct: 14  SGCYILRPWAHAIWEAIKDFFDAEIKKLGVENCYFPMFVSQAALETEKSHIADFAPEVAW 73

Query: 96  LADRNDKAMIYG----PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
           +       +       PT E VM   +   ++S+R+LP    Q     R E +     +R
Sbjct: 74  VTRSGKTELAEPIAIRPTSETVMYPSYAKWVQSHRDLPIKLNQWCSVVRWEFKHPQPFLR 133

Query: 152 SREFLMKDAYSFDLTPEGSKHSYN 175
           +REFL ++ ++   T E +     
Sbjct: 134 TREFLWQEGHTAFATYEEAAEEVK 157


>gi|317967929|ref|ZP_07969319.1| seryl-tRNA synthetase [Synechococcus sp. CB0205]
          Length = 426

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 67/214 (31%), Gaps = 12/214 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + + LG +   ++   + +     G  E+  P L ++     SG+   + +E  R   
Sbjct: 167 FVTLMGLGARLERSLINFMLDLHGGKGYREVLPPILVNSASLTGSGQLPKFAEESFRC-- 224

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  +     LP  +      FR E     R   G++R  +
Sbjct: 225 -AEDDLWLTPTAEVPVTSLHRGEVIPADQLPLKYVAYTPCFRREAGSYGRDTRGLIRLHQ 283

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   + Y F      +             +   L L    +   +G +G   +     E 
Sbjct: 284 FNKVELYWFCHPEHSADAHQQITAD-AEAVLEALELPYRKIELCTGDMGFSATRTYDLEV 342

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +       ++       DF          +  +
Sbjct: 343 WLPGAGAYREISSCSVCGDFQARRSAIRCKEGKT 376


>gi|256848554|ref|ZP_05553995.1| seryl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
 gi|256714606|gb|EEU29586.1| seryl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
          Length = 435

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 78/219 (35%), Gaps = 12/219 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +L LG +    V   + +E  + G  E+  P + +A     +G++  + + + ++  
Sbjct: 163 FVYYLGLGAQLERAVYNFMLDEHMKDGYTEVLPPYIVNAKSMYGTGQFPKFKEGVYQV-- 220

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSRE 154
            N + M   PT E  +T+ +R  +   + LP     +   FR E         G++R  +
Sbjct: 221 -NGEDMTLIPTAEVPLTNYYRGDVIPEQELPVYVTALTPCFRSEAGAAGRDTRGLIRMHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   +    +           +   I  +LGL    +   S  +    S     E 
Sbjct: 280 FNKVEMVKYTKPEDSWDELEKMT-ANAENILKKLGLPYHVITLTSSDMSFTASMTHDLEL 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            + A     +V    + +DF     +T + D       V
Sbjct: 339 WMPAQNKYREVSSCSNCLDFQARRMHTQYRDADGKLHYV 377


>gi|218263553|ref|ZP_03477634.1| hypothetical protein PRABACTJOHN_03322 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222676|gb|EEC95326.1| hypothetical protein PRABACTJOHN_03322 [Parabacteroides johnsonii
           DSM 18315]
          Length = 451

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 76/452 (16%), Positives = 134/452 (29%), Gaps = 64/452 (14%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSAD-------------LWVE 82
           P G +          + +   IRE  +  G  ++  P +++               L+  
Sbjct: 7   PKGTRDFSPEEMAKRNYIFNTIREVYHLYGFQQIETPAMENLSTLMGKYGEEGDKLLFKI 66

Query: 83  --SGRYDSYGKE---MLRLADRND---KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             SG   S   +   + R A R                        H ++    PF  YQ
Sbjct: 67  LNSGNCLSGITDEELLERNAVRFGVKACEKGLRYDLTVPFARYVVQH-RNDITFPFKRYQ 125

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSI 193
           IQ  +R +   +    R REF   D          ++      M   + R   R+ +K  
Sbjct: 126 IQPVWRADRPQKG---RYREFYQCDGDVVGSDSLVNEVELIQIMDEVFHRFGIRVCIKMN 182

Query: 194 PMRAES----------------------GPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
             +  S                        IG D  +E +   D  E  +   +  +   
Sbjct: 183 NRKILSGIAEIIGEADKIVDITVAIDKLDKIGLDNVNEELRSKDLSEDAIARLQPIIMLK 242

Query: 232 -IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF-DSLPENKRVSARGI--EVGHI 287
               E           S +               EKL  ++  E     ARG+    G I
Sbjct: 243 GTNREKLVVLKKELAASEIAMKGIAEMEFILDRIEKLELNAELELDLTLARGLNYYTGAI 302

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA-VIESSHDGKGIIWPDSVAP 346
           F          S T  G       V       G      A  I    +   +   DS+  
Sbjct: 303 FEVKALDVQIGSITGGGRYDNLTGVFGMDGVSGVGISFGADRIFDVLNQLELYPVDSLKT 362

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            ++  +N    ++   +    + +++   G          ++  Q   AD    P   IV
Sbjct: 363 TQLLFVNFGEKEE---NYLLPLISKVRAAGIRTELYPEAAKMKKQMGYADTKKIPFVAIV 419

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           G   +++ K+ +K+ LTG +  +++EE+I   
Sbjct: 420 GENEINEGKINLKNMLTGEQSLVTIEELIERF 451


>gi|15676750|ref|NP_273895.1| histidyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|32130149|sp|Q9JZX9|SYH_NEIMB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|7226090|gb|AAF41265.1| histidyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|316984261|gb|EFV63237.1| histidyl-tRNA synthetase [Neisseria meningitidis H44/76]
 gi|325140001|gb|EGC62530.1| histidyl-tRNA synthetase [Neisseria meningitidis CU385]
 gi|325200469|gb|ADY95924.1| histidyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 431

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 113/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVKQKDFKLTAAFWQAFEDTVGRWTRAYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEDKLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEDS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYVRFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++ E++      
Sbjct: 414 QTVAAEDLTPTLQQ 427


>gi|37520285|ref|NP_923662.1| seryl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
 gi|46577178|sp|Q7NMP9|SYS_GLOVI RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|35211278|dbj|BAC88657.1| seryl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
          Length = 429

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 74/229 (32%), Gaps = 18/229 (7%)

Query: 14  NPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            P        +L L    R  ++ Q      + +  G      + A + +     G IE+
Sbjct: 142 EPAAHWDLGERLGLMNFARATLVAQAR--FVTLMGDGALLERALIAFMLDRHRAHGYIEI 199

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P L +      +G+   + ++  R  D     +   PT E  +T+++R  I +   LP
Sbjct: 200 LPPYLVNTASMTGTGQLPKFAEDSFRCRD---DDLWLIPTAEVPVTNLYRDEILTDMQLP 256

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E     R   G++R  +F   +   F             +      + 
Sbjct: 257 IHHCAFTPCFRREAGSYGRDTRGLIRLHQFHKVELVKFCRPEHSPTEHEKLVAD-AEDVL 315

Query: 186 HRLGLKSIPMRAESGPI----GGDLSHEFIVLADTGETQVFCSKDFMDF 230
            +L L    +   +G +          E  + +     ++    +F DF
Sbjct: 316 QQLELPYRVIELCTGDLGFGAARCFDLEVWLPSQNRYREISSCSNFEDF 364


>gi|67924788|ref|ZP_00518188.1| Seryl-tRNA synthetase, class IIa [Crocosphaera watsonii WH 8501]
 gi|67853356|gb|EAM48715.1| Seryl-tRNA synthetase, class IIa [Crocosphaera watsonii WH 8501]
          Length = 427

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 69/207 (33%), Gaps = 12/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + ++Q   G +E+  P L +++    +G+   + +E  ++    D  + 
Sbjct: 176 GAALERALINFMLDQQISAGYLEVMPPVLINSEALQGTGQLPKFAEESFKV---PDDDLW 232

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++ S I     LP         FR E     +   G++R  +F   +  
Sbjct: 233 LAPTAEVPVTNLYSSEILEAEKLPIKHCAFTPCFRREAGSYGKDTRGLIRLHQFNKVELV 292

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                          +      I   L L    +   +G +G   +     E  + +   
Sbjct: 293 KLVHPETSEVEHQQLVKD-AEAILQLLKLPYRVLELCTGDLGFGATKCYDLEVWLPSSNS 351

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF     N  F +   
Sbjct: 352 YREISSCSNCWDFQARRANIRFKEKGK 378


>gi|318040473|ref|ZP_07972429.1| seryl-tRNA synthetase [Synechococcus sp. CB0101]
          Length = 424

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 64/176 (36%), Gaps = 8/176 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + L  G +    +   + +     G  E+  P L ++     SG+   + +E  R   
Sbjct: 167 FVTLLGQGARLERALINFMLDLHGGKGYREVLPPILVNSASLTGSGQLPKFAEESFRC-- 224

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  +     LP  +      FR E     R   G++R  +
Sbjct: 225 -AEDDLWLTPTAEVPVTSLHRDEVIPAEQLPLKYVAYTPCFRREAGSYGRDTRGLIRLHQ 283

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           F   + Y F   P+ S  ++ ++      +   L L    +   +G +G   +  +
Sbjct: 284 FNKVELYWFCH-PDHSAEAHQQITADAEAVLEALELPYRKIELCTGDMGFSAARTY 338


>gi|227529785|ref|ZP_03959834.1| seryl-tRNA synthetase [Lactobacillus vaginalis ATCC 49540]
 gi|227350269|gb|EEJ40560.1| seryl-tRNA synthetase [Lactobacillus vaginalis ATCC 49540]
          Length = 431

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 77/219 (35%), Gaps = 12/219 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +L LG +    V   + +E  + G  E+  P + +A     +G++  + K + ++  
Sbjct: 163 FVYYLGLGAQLERAVYNFMLDEHMKDGYTEVLPPYIVNAASMYGTGQFPKFKKGVYQV-- 220

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSRE 154
            N + M   PT E  +T+ +R  +     LP     +   FR E         G++R  +
Sbjct: 221 -NGEDMTLIPTAEVPLTNYYRGDVIPAEELPVYVTALTPCFRSEAGAAGRDTRGLIRMHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   +    +           +   I  +LGL    +   +  +    S     E 
Sbjct: 280 FNKVEMVKYTKPEDSWDELEKMT-ANAENILKKLGLPYHVITLTTSDMSFTASETHDLEL 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            + A     +V    + +DF     +T + D       V
Sbjct: 339 WMPAQNKYREVSSCSNCLDFQARRMHTQYRDENGKLQYV 377


>gi|225869128|ref|YP_002745076.1| seryl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
 gi|259511681|sp|C0ME07|SYS_STRS7 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|225702404|emb|CAX00264.1| seryl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
          Length = 425

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 90/260 (34%), Gaps = 21/260 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     + +
Sbjct: 165 FYKNLGARLERALYNFMLDEHLKEGYQEIIPPYMVNHDSMFGTGQYPKFKED---TFELD 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
             + +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 GTSFVLIPTAEVPLTNYYRGDIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F       +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPETSYEELEKMT-ANAENILQKLELPYRVLALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD----IISLNSIVEQWTAPYAAT-----SDVH 263
            A     ++    +  DF        + D     + L   +         T      +  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEADGKVKLLHTLNGSGLAVGRTVAAILENYQ 400

Query: 264 NEKLFDSLPENKRVSARGIE 283
           NE    ++PE  R    G+E
Sbjct: 401 NEDGSVTIPEVLRPYMGGLE 420


>gi|257785136|ref|YP_003180353.1| seryl-tRNA synthetase [Atopobium parvulum DSM 20469]
 gi|257473643|gb|ACV51762.1| seryl-tRNA synthetase [Atopobium parvulum DSM 20469]
          Length = 427

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 72/216 (33%), Gaps = 13/216 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
            Y    +G +    +   + +  N+ G  E   P + + D    +G+   + +++  +  
Sbjct: 165 FYLLGGMGARMERALINFMIDTHNQAGFKEWWPPVITNQDSLYGTGQLPKFEEDLYHVQ- 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                +   PT E  +T+I R  I     LP  +      FR+E     R   G++R  +
Sbjct: 224 ---PDLYLIPTAEVQLTNIHRDEILDASQLPLLYTAFTPCFREEAGSAGRDTRGIIRVHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F    +        M     +I   LGL    +   +G IG         E 
Sbjct: 281 FDKVEMVKFAKPEDSMNQL-ESMVQEAEKILQLLGLPYHVVTLCTGDIGFSACKCYDIEV 339

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
            + +     ++    +  DF     N  + D     
Sbjct: 340 WLPSYNAYKEISSCSNCWDFQARRANIRYKDPAEFK 375


>gi|284998337|ref|YP_003420105.1| histidyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
 gi|284446233|gb|ADB87735.1| histidyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
          Length = 426

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/415 (11%), Positives = 127/415 (30%), Gaps = 31/415 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPT 109
           +  + +  R+   + G  E+  P ++   L+   G  +   + M    D+ D+ +   P 
Sbjct: 21  IRYLESTFRDLAIKYGYSEIITPVVEEFKLFALKG-GEELRETMYVFKDKADRELSLRPE 79

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
               +   +  +++S       FY   +   DE  P++G  R  EF          +   
Sbjct: 80  ITPSVARAYIQNLQSSPKPIRLFYFGTVYRYDE--PQYGRYR--EFRQAGIEMIGDSSIL 135

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV-FCSKDFM 228
           +      +   Y           I ++  +  I   +  ++ +  +  E  +    K+ +
Sbjct: 136 ADLEVLDLL--YNFYDKLNLSNDITIKINNIGIFRKIMDKYNIEDNLQEHILHLIDKNKI 193

Query: 229 DFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--------------- 273
           +  +     +  +   ++   +  T       D+ +    + +                 
Sbjct: 194 NEALDILEKNLKNKDIIDFFNKILTKKDTKLEDIESLAELEEVSRLDIKSEFLYLFRLSR 253

Query: 274 ------NKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                  K     G   G  +Y G  +   +  + + +              G +   A 
Sbjct: 254 ILSNLNIKFKIDLGFVRGLAYYTGLIF-EVLHPSVQFSIAGGGRYDKLIELYGGLPSPAI 312

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
                 +   ++  D      +++I I   +         +   L K    V  +   + 
Sbjct: 313 GFAIGVERTLLVIKDLKVEEPVNVIVIGISEDTIPSM-FMVSRILRKEEYKVVINTKDQP 371

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +          GF + +I+G + +  + + +++ +T  +  + LE + +      
Sbjct: 372 LSKLLPYYASQGFKVAIIIGKQELEKNMITVRNLITRKQISVPLENIEDAIKQTL 426


>gi|313230616|emb|CBY18832.1| unnamed protein product [Oikopleura dioica]
          Length = 768

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 57/152 (37%), Gaps = 11/152 (7%)

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH-------DGKGIIWPDSVAPFKISLIN 353
             K    +  + ++     G  R+++A++E S               P         +  
Sbjct: 539 EIKNIQVESFFPEVIEPSFGLGRILSALLEHSFQQREVDGRKFFTFPPSVAPYKASVMTI 598

Query: 354 IKAH--DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           I     D         I   LS +  D   D  G+ IG ++++ D +G P  +++     
Sbjct: 599 INMKELDVKADAVARLICEELSSLSVDYRVDTGGKTIGRKYSLNDEIGVPYGIVIDFDTF 658

Query: 412 --SDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             S + V I+ R T  +  +++++V ++ +  
Sbjct: 659 RYSPATVSIRDRDTLSQLRVNVKDVASFINQL 690



 Score = 48.6 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRY 86
           +G I+    G+Y + PLG K  +NV    +      R    E+    +    +   SG  
Sbjct: 137 SGEIYGGGAGLYDFGPLGSKLKNNVIREWKNVFVDGRPDVFEVDTTIMTPERVLQGSGHT 196

Query: 87  DSYGKEMLRLADRNDK 102
           + +   M++     + 
Sbjct: 197 EKFADLMVKEISSGEF 212


>gi|325285222|ref|YP_004261012.1| Histidyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
 gi|324320676|gb|ADY28141.1| Histidyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
          Length = 458

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 1/101 (0%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
                   + ++ +   D     A  ++   L K G          ++  Q   A+    
Sbjct: 359 FPEEINKSLEILCVNFGDNEAF-AALELVTELRKNGVKADVYPSAVKMQKQMKYANKRNV 417

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           P  V++G + + +    +K+   G ++   L  V  + +  
Sbjct: 418 PYVVLIGEQELLNGDFVVKNMEKGDQQTYKLSNVSEFIASL 458


>gi|298373550|ref|ZP_06983539.1| histidine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274602|gb|EFI16154.1| histidine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 453

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 32/82 (39%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D+  R     I   + + G          +I  Q   A+    P   IVG + +    V 
Sbjct: 371 DEEGRKYSLPIVRSIRRKGIAAELYPDNAKIKKQMQYANDKRIPFVAIVGDEEIKSHSVM 430

Query: 418 IKHRLTGIREDMSLEEVINYAS 439
           +K+  TG ++ +S++ ++    
Sbjct: 431 LKNMETGEQKLVSIDNIVQEIR 452


>gi|313889655|ref|ZP_07823298.1| serine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121952|gb|EFR45048.1| serine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 425

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 73/211 (34%), Gaps = 12/211 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKNLGARLERALYNFMLDEHAKEGYQEIIPPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DTNFVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E               I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYDELEKMTTN-AENILQKLELPYRVIALCTGDMGFSAAKTYDVEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            A     ++    +  DF        + D  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEA 371


>gi|227543803|ref|ZP_03973852.1| serine--tRNA ligase [Lactobacillus reuteri CF48-3A]
 gi|300908871|ref|ZP_07126334.1| serine--tRNA ligase [Lactobacillus reuteri SD2112]
 gi|227186218|gb|EEI66289.1| serine--tRNA ligase [Lactobacillus reuteri CF48-3A]
 gi|300894278|gb|EFK87636.1| serine--tRNA ligase [Lactobacillus reuteri SD2112]
          Length = 435

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 80/230 (34%), Gaps = 14/230 (6%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD 87
           R G +         +L LG +    V   + +E  + G  E+  P + +AD    +G++ 
Sbjct: 154 RAGKV--SGARFVYYLGLGAQLERAVYNFMLDEHMKEGYTEVLPPYIVNADSMYGTGQFP 211

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-- 145
            + + + ++   N + M   PT E  +T+ +R  +     LP     +   FR E     
Sbjct: 212 KFKEGVYQV---NGEDMTLIPTAEVPLTNYYRGEVIPTEELPVYVTALTPSFRSEAGAAG 268

Query: 146 --RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G++R  +F   +   +                +   I  +L L    +   +G + 
Sbjct: 269 RDTRGLIRMHQFNKVEMVKYTKPENSWDELEKMT-ANAENILKKLNLPYHVITLTTGDMS 327

Query: 204 GDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              S     E  + A     +V    + +DF     +T + D       V
Sbjct: 328 FTASETHDLELWMPAQNKYREVSSCSNCLDFQARRMHTQYRDENGKLQYV 377


>gi|148543336|ref|YP_001270706.1| seryl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|184152746|ref|YP_001841087.1| seryl-tRNA synthetase [Lactobacillus reuteri JCM 1112]
 gi|227364408|ref|ZP_03848498.1| seryl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|325683608|ref|ZP_08163124.1| serine--tRNA ligase [Lactobacillus reuteri MM4-1A]
 gi|166987314|sp|A5VHP5|SYS_LACRD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|229890222|sp|B2G575|SYS_LACRJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|148530370|gb|ABQ82369.1| seryl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|183224090|dbj|BAG24607.1| seryl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|227070501|gb|EEI08834.1| seryl-tRNA synthetase [Lactobacillus reuteri MM2-3]
 gi|324977958|gb|EGC14909.1| serine--tRNA ligase [Lactobacillus reuteri MM4-1A]
          Length = 435

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 80/230 (34%), Gaps = 14/230 (6%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD 87
           R G +         +L LG +    V   + +E  + G  E+  P + +AD    +G++ 
Sbjct: 154 RAGKV--SGARFVYYLGLGAQLERAVYNFMLDEHMKEGYTEVLPPYIVNADSMYGTGQFP 211

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-- 145
            + + + ++   N + M   PT E  +T+ +R  +     LP     +   FR E     
Sbjct: 212 KFKEGVYQV---NGEDMTLIPTAEVPLTNYYRGEVIPTEELPVYVTALTPSFRSEAGAAG 268

Query: 146 --RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G++R  +F   +   +                +   I  +L L    +   +G + 
Sbjct: 269 RDTRGLIRMHQFNKVEMVKYTKPENSWDELEKMT-ANAENILKKLNLPYHVITLTTGDMS 327

Query: 204 GDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              S     E  + A     +V    + +DF     +T + D       V
Sbjct: 328 FTASETHDLELWMPAQNKYREVSSCSNCLDFQARRMHTQYRDENGKLQYV 377


>gi|194467495|ref|ZP_03073482.1| seryl-tRNA synthetase [Lactobacillus reuteri 100-23]
 gi|194454531|gb|EDX43428.1| seryl-tRNA synthetase [Lactobacillus reuteri 100-23]
          Length = 435

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 80/230 (34%), Gaps = 14/230 (6%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD 87
           R G +         +L LG +    V   + +E  + G  E+  P + +AD    +G++ 
Sbjct: 154 RAGKV--SGARFVYYLGLGAQLERAVYNFMLDEHMKEGYTEVLPPYIVNADSMYGTGQFP 211

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP-- 145
            + + + ++   N + M   PT E  +T+ +R  +     LP     +   FR E     
Sbjct: 212 KFKEGVYQV---NGEDMTLIPTAEVPLTNYYRGEVIPTEELPVYVTALTPSFRSEAGAAG 268

Query: 146 --RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
               G++R  +F   +   +                +   I  +L L    +   +G + 
Sbjct: 269 RDTRGLIRMHQFNKVEMVKYTKPENSWDELEKMT-ANAENILKKLNLPYHVITLTTGDMS 327

Query: 204 GDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              S     E  + A     +V    + +DF     +T + D       V
Sbjct: 328 FTASETHDLELWMPAQNKYREVSSCSNCLDFQARRMHTQYRDENGKLQYV 377


>gi|298243503|ref|ZP_06967310.1| histidyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297556557|gb|EFH90421.1| histidyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 438

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 63/417 (15%), Positives = 121/417 (29%), Gaps = 30/417 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKA---- 103
              V  + +E     G   +  P L+   L+  +     D   KEM    DR DK     
Sbjct: 22  WQYVEMVAQEIAELFGYRRIETPLLEETSLFRRTSGESSDIVSKEMYSFDDRADKEGRSQ 81

Query: 104 -MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY- 161
            +   P     +   +  H  S    P   Y +        RP+ G  R  E        
Sbjct: 82  NLSLRPEGTAGVVRAYLEHGMSRLPQPVKLYYLSEPMFRRDRPQAGRYR--EHHQFGCEA 139

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFI------VL 213
             +  P         ++  Y R+  +     +    +    P   +   E+         
Sbjct: 140 LGENDPVLDAEMIALLYQFYTRLGLKQINVQVNSIGDPEGRPQYIEKLREYYRPLLDTCC 199

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDI-ISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
           AD            +D   P +     +   +++ + E     +AA              
Sbjct: 200 ADCKVRFEKNPLRLLDCKEPQDQAKIANAPKTIDHLSESAQQHFAALRRYLEAYGVPYEI 259

Query: 273 ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESS 332
               V         +F F +++   +S    G       +  G++  G     A +  + 
Sbjct: 260 NPLLVRGLDYYSHTVFEFISEFDSKLSINGGGRYDGLAELLGGAHVPGIG-FGAGIERTI 318

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGS 390
            + K               +      +  +DA   + ARL K G      + D   +   
Sbjct: 319 LEMKRQGIEPPAEKKAQVFVVYFDRTEELKDAAVHVTARLRKAGLRTEMSYGDRSRKA-- 376

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGI-----REDMSLEEVINYASHR 441
           Q   A+       +++ +  +++  + IK  R  G      +  + L+E+  Y   R
Sbjct: 377 QMKQANNSQAEYAILIIADELANGVITIKDMRAEGEDIDSKQTQVRLDELEAYFQQR 433


>gi|219130551|ref|XP_002185426.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403140|gb|EEC43095.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 438

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/452 (12%), Positives = 128/452 (28%), Gaps = 60/452 (13%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           + +KG   +LP           IIR      GA+E+  P  +  D    +G+Y    K +
Sbjct: 1   KIAKGTRDYLPEQMMIRQEAFNIIRRVFESHGAVEIDTPVFELKDTL--TGKYGEDSKLI 58

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             LAD+  + +                   S  ++         K     +P+    R R
Sbjct: 59  YDLADQGGELLALRYDLTVPFA-----RFLSLNSVGNIKRFHIGKVYRRDQPQLNRGRYR 113

Query: 154 EFLMKDAYSFD----LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG-PIGGDLSH 208
           EF   D         + P+          +  L I       +     ++   + G  + 
Sbjct: 114 EFYQCDFDIAGTYGRMVPDSECLCVACDILDALPIGDFGIKLNHRRLLDAILDLCGVPAD 173

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY----AATSDVHN 264
           +F  +    +      K   +     +    +D     S+ ++                +
Sbjct: 174 KFRTICSAVD------KLDKEAWSEVKREMVEDKGLPESVADKIGTFVLNKGPPWDMYKS 227

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK-----GADGKDHYVQMGSYGI 319
               +    +K  +    ++  +F +          +F      G D     +       
Sbjct: 228 LMDGNRFGNHKGANEAMEDLRILFEYLEAMDKLKFISFDLSLARGLDYYTGVIYEAVCMS 287

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR----LSKV 375
           G  +V +      +D    ++ ++        +++            ++  +    + + 
Sbjct: 288 GEAQVGSIGGGGRYDNLVSMFQEAGKQTPCVGVSVGIERVFTLMEA-RLREQQGGSIKRA 346

Query: 376 GCDVFWDDMGEQIGS-QFA------------------VADLLG---------FPLQVIVG 407
             ++     G  +   +                     A L            P  VIVG
Sbjct: 347 NVNILIAAAGGTMMKEKMRIARILWDNKLSAEFSQQENAKLKKELQNALDRDIPFMVIVG 406

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            + +++SKV +K         + ++E+++   
Sbjct: 407 EEELAESKVTVKDLKAKTEHKVPIDELVSTLR 438


>gi|229080541|ref|ZP_04213062.1| Histidyl-tRNA synthetase 1 [Bacillus cereus Rock4-2]
 gi|228702843|gb|EEL55308.1| Histidyl-tRNA synthetase 1 [Bacillus cereus Rock4-2]
          Length = 436

 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 70/441 (15%), Positives = 139/441 (31%), Gaps = 48/441 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACGDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +   +      LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRDIALRYDLTIPFAKVVAMNQN--IRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+++ I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFRTLNLEISIQYNNRKLLNGILQAINIPTELTNDVILS 185

Query: 214 ADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            D  E        KD ++  I  E  D      L+ +              +N+ + D +
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIVDF---KEAFNNQLVADGV 242

Query: 272 PENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            E +++       GI    IF       L M                 S G G  R    
Sbjct: 243 NELQQLQQYLIALGINENTIFNPFLARGLTMYTGTIYEIFLKDGSITSSIGSGG-RYDNI 301

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLSK- 374
           +     D              +    +   + +   A            C +I  +L   
Sbjct: 302 IGAFRGDNMNYPTVGISFGLDVIYTALSQKETISSTADLFIIPLGTELQCLQIAQQLRST 361

Query: 375 --VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +  ++         G +   A    +    P  +I+G + +S + V +++   G    
Sbjct: 362 TSLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTNTVVLRNMKEGSEMK 415

Query: 429 MSLEEVI-NYASHRFSNNRPV 448
           + L  +  N  +  F+   P+
Sbjct: 416 VPLSSLKNNTLNKYFTTPTPL 436


>gi|116073516|ref|ZP_01470778.1| seryl-tRNA synthetase [Synechococcus sp. RS9916]
 gi|116068821|gb|EAU74573.1| seryl-tRNA synthetase [Synechococcus sp. RS9916]
          Length = 425

 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 8/176 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + +  G +    +   + +     G  E+  P L ++     SG+   + +E  R   
Sbjct: 166 FVTLMGQGARLERALINFMLDLHCSKGYKEVLPPVLVNSASLQGSGQLPKFAEESFRC-- 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  I     LP  +      FR E     R   G++R  +
Sbjct: 224 -AEDDLWLTPTAEVPVTSLHRDEIIPADQLPVRYVAYSPCFRREAGSYGRDTRGLIRLHQ 282

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           F   + Y F   P+ S+ ++ ++      +   L L    +   +G IG   +  +
Sbjct: 283 FNKVELYWFVH-PDHSEKAHAQITADAEAVLQALELPYRVLDLCTGDIGFSAARTY 337


>gi|303232994|ref|ZP_07319674.1| serine--tRNA ligase [Atopobium vaginae PB189-T1-4]
 gi|302480921|gb|EFL44001.1| serine--tRNA ligase [Atopobium vaginae PB189-T1-4]
          Length = 429

 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 82/263 (31%), Gaps = 23/263 (8%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
            Y     G +    +     +   + G  E   P L + D    +G+   + +++  ++D
Sbjct: 165 FYVLGGYGAQMERALINFFIDMHAKAGFKEWWPPVLTNYDSLFGTGQLPKFDEDLFHVSD 224

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                +   PT E ++T++ R  +     LP  +      FR+E     R   G++R  E
Sbjct: 225 N----LYLIPTAEVMLTNLHRDEVLDAAQLPLLYTAFTPCFREEAGSAGRDTRGIIRVHE 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F             +          LGL    +   +G IG         E 
Sbjct: 281 FDKVEMVKFATPENSMNELELMVGE-AEACLQTLGLPYRVVSLCTGDIGFSACKCYDLEV 339

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN-----SIVEQWTAPYAATSDVHNE 265
            + +     ++    +  DF     N  + D  S         +         T     E
Sbjct: 340 WLPSYNNYKEISSCSNCWDFQARRANIRYRDAASFKGTRYVHTLNGSGLAVGRTMAAIME 399

Query: 266 KLFDS-----LPENKRVSARGIE 283
               +     +PE  R   RG+E
Sbjct: 400 NYQQADGSIVVPEALRPYMRGLE 422


>gi|161344096|ref|YP_399468.2| seryl-tRNA synthetase [Synechococcus elongatus PCC 7942]
 gi|161621818|ref|YP_171779.2| seryl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|146345525|sp|Q8GMR7|SYS_SYNE7 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
          Length = 428

 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 12/213 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + L  G      + A + + Q   G  E++ P L ++     SG+   + +E  R   
Sbjct: 167 FVTLLGAGAALERALIAFMLDRQTAAGYTEVAPPYLINSASLTASGQLPKFSEESFRC-- 224

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            +   +   PT E  +T ++R  I S   LP  +      FR E     R   G++R  +
Sbjct: 225 -DRDDLWLTPTAEVPLTSLYRDEILSADQLPLRYCAYTPCFRREAGSYGRDTRGLIRLHQ 283

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F  K      + P+ S+ ++ ++  +   I   L L    +   +G +G         E 
Sbjct: 284 FN-KVELYQFVHPDHSEAAHQQLLANAEAILQALELPYRTIELCTGDLGFSAQKTYDIEV 342

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            + +     ++    +  DF     N  F +  
Sbjct: 343 WLPSAGRYREISSCSNCGDFQARRANIRFKEAG 375


>gi|24414814|emb|CAD55627.1| serine-tRNA ligase [Synechococcus elongatus PCC 7942]
          Length = 438

 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 12/213 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + L  G      + A + + Q   G  E++ P L ++     SG+   + +E  R   
Sbjct: 182 FVTLLGAGAALERALIAFMLDRQTAAGYTEVAPPYLINSASLTASGQLPKFSEESFRC-- 239

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            +   +   PT E  +T ++R  I S   LP  +      FR E     R   G++R  +
Sbjct: 240 -DRDDLWLTPTAEVPLTSLYRDEILSADQLPLRYCAYTPCFRREAGSYGRDTRGLIRLHQ 298

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F  K      + P+ S+ ++ ++  +   I   L L    +   +G +G         E 
Sbjct: 299 FN-KVELYQFVHPDHSEAAHQQLLANAEAILQALELPYRTIELCTGDLGFSAQKTYDIEV 357

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            + +     ++    +  DF     N  F +  
Sbjct: 358 WLPSAGRYREISSCSNCGDFQARRANIRFKEAG 390


>gi|56686037|dbj|BAD79259.1| seryl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|81168141|gb|ABB56481.1| seryl-tRNA synthetase [Synechococcus elongatus PCC 7942]
          Length = 443

 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 12/213 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + L  G      + A + + Q   G  E++ P L ++     SG+   + +E  R   
Sbjct: 182 FVTLLGAGAALERALIAFMLDRQTAAGYTEVAPPYLINSASLTASGQLPKFSEESFRC-- 239

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            +   +   PT E  +T ++R  I S   LP  +      FR E     R   G++R  +
Sbjct: 240 -DRDDLWLTPTAEVPLTSLYRDEILSADQLPLRYCAYTPCFRREAGSYGRDTRGLIRLHQ 298

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F  K      + P+ S+ ++ ++  +   I   L L    +   +G +G         E 
Sbjct: 299 FN-KVELYQFVHPDHSEAAHQQLLANAEAILQALELPYRTIELCTGDLGFSAQKTYDIEV 357

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            + +     ++    +  DF     N  F +  
Sbjct: 358 WLPSAGRYREISSCSNCGDFQARRANIRFKEAG 390


>gi|118478621|ref|YP_895772.1| histidyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|118417846|gb|ABK86265.1| histidyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
          Length = 444

 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 69/423 (16%), Positives = 132/423 (31%), Gaps = 33/423 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  P L   +L   + G  D   KE+  L D+
Sbjct: 30  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPMLNMYELMSYKYGGGDEILKEIYTLRDQ 89

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 90  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 144

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ES  I  + + + I+ 
Sbjct: 145 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILESINIPTERTSDVILS 204

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDF-DDIISLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT      +S++   + +  P  A      
Sbjct: 205 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLQLSIDDFKDAFNTPLVAEGVNEL 264

Query: 265 EKLFDSLP----ENKRVSARGIEVGHIFYFGTKYS---LPMSATFKGADGKDHYVQMGSY 317
           ++L   L         +    +  G   Y GT Y       S T     G  +   +G++
Sbjct: 265 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAF 324

Query: 318 GIGAMRVVAAVIESSHD-GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
               M      I    D     +           +  I    ++    C +I  +L    
Sbjct: 325 RGDNMSYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGTELH---CLQIAQQLRSTT 381

Query: 377 -CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              V  +  G ++      A+    P  +I+G + +    V +++   G    + L  + 
Sbjct: 382 TLKVELELAGRKLKRALNYANKENIPYVLIIGEEEICTETVMLRNMKEGSEVKVPLSSLS 441

Query: 436 NYA 438
           NY 
Sbjct: 442 NYL 444


>gi|282857769|ref|ZP_06266978.1| serine--tRNA ligase [Pyramidobacter piscolens W5455]
 gi|282584439|gb|EFB89798.1| serine--tRNA ligase [Pyramidobacter piscolens W5455]
          Length = 428

 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 73/204 (35%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +    + G  E +VP + +++  + +G+   + +++ ++       
Sbjct: 168 LGARLERAIMNYMLDMHTQKHGYTEFNVPVMVNSESMLGTGQLPKFAEDLYKVE---KDD 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T++    + S   LP  +      FR E     R   G+MR  +F   +
Sbjct: 225 LWMIPTAEVPLTNMHNGEMLSESELPKYYTAYTPCFRRESGSYGRDVRGIMRLHQFDKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLAD 215
                           K+  +   +   LGL    +   +G +          E  + + 
Sbjct: 285 MVKICTPESSWDEL-EKLTGNAEEVLQGLGLPYRVIVLCTGDMGFGSAKTYDVEVWLPSQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    + +DF     NT +
Sbjct: 344 NCYREISSCSNCVDFQARRMNTRY 367


>gi|40062768|gb|AAR37662.1| histidyl-tRNA synthetase [uncultured marine bacterium 439]
          Length = 422

 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/423 (11%), Positives = 123/423 (29%), Gaps = 28/423 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP        +   I +     G      P +++ + +  + G   D   KEM  
Sbjct: 10  GMNDLLPSESNLWLALEETINQLLISYGYKYCRTPIVENTETFSRAIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D + +++   P     +  +   H      +   FY     FR E   +    +  + 
Sbjct: 70  WKDLSGESLTLRPEATAGIVRMMIEHNLPREGIQKVFY-HGPMFRHERPQKGRYRQFHQV 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
            ++   ++D   +             + I +     +    +E+      L   + +   
Sbjct: 129 DVEVFGAYDAKIDAELIDITNSLWKLIGINNASLEINSLGSSETRSSYRKLLQNYFIDNK 188

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS----- 270
           +   +    +     P+   ++   ++ +L     +        SD H     +      
Sbjct: 189 SQLDED-SLRRLTTNPLRILDSKNSEMEALIESAPKMIDHLDDESDEHFSVFKNYLDCLE 247

Query: 271 --------LPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIG 320
                   L        R +        G + ++     + G       +      + IG
Sbjct: 248 IPYSINPRLVRGLDYYNRTVFEWISNDLGAQGTICGGGRYDGLVEKMGGNPTPAIGFAIG 307

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R++  + + ++  +                               I++ L      + 
Sbjct: 308 IERLILLIKDQTNKLQKNKPHLYFTALGERAQMASMK------LSRDIHSALPD--ITIT 359

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMSLEEVINYAS 439
            D  G  + +Q   A+       +I+G + +S +++ IK     G ++ + LE +I    
Sbjct: 360 NDMSGGSLKNQMKKANKSKADFALILGEEELSKNQLSIKPLKGQGDQQLIKLEGIIQRLQ 419

Query: 440 HRF 442
              
Sbjct: 420 EIL 422


>gi|227892467|ref|ZP_04010272.1| seryl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|227865760|gb|EEJ73181.1| seryl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|300214095|gb|ADJ78511.1| Seryl-tRNA synthetase (Seryl-tRNA(Ser/Sec) synthetase)
           (Serine--tRNA ligase) (SerRS) [Lactobacillus salivarius
           CECT 5713]
          Length = 425

 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 90/261 (34%), Gaps = 20/261 (7%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +  LG K    V   + +E  + G  E+  P +  A     +G++  +  ++ ++  
Sbjct: 163 FVFYKGLGAKLERAVYNFMLDEHAKEGYTEVIPPYIVKAKSMYGTGQFPKFKDQVYQV-- 220

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N + M   PT E  +T+ +R  +    +LP  F  +   FR E     R   G++R  +
Sbjct: 221 -NGEDMTLIPTAEVPLTNYYREEVIPTEDLPVYFTALSPSFRSEAGSAGRDTRGLIRMHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   +    +           +   I  +LGL    +   +G +G   +     E 
Sbjct: 280 FNKVEMVKYTKPEDSYNELEKMT-KNAGNIMEKLGLPYHVITLSTGDMGFSAAMTHDLEV 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP--------YAATSDV 262
            + A     ++    +  DF        + D       V               A   + 
Sbjct: 339 WMPAQDTYREISSCSNCEDFQARRARIQYRDENGKLQYVHTLNGSGLAVGRTVAAILENY 398

Query: 263 HNEKLFDSLPENKRVSARGIE 283
            NE    ++PE  R   +G+E
Sbjct: 399 QNEDGSVTIPEALRPYMQGLE 419


>gi|254804725|ref|YP_003082946.1| Histidyl-tRNA synthetase [Neisseria meningitidis alpha14]
 gi|254668267|emb|CBA05143.1| Histidyl-tRNA synthetase [Neisseria meningitidis alpha14]
          Length = 472

 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 59/445 (13%), Positives = 116/445 (26%), Gaps = 44/445 (9%)

Query: 28  RTGMIH-----QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQ 75
           R   I      Q  KG+   LP       L           +       G  ++  P ++
Sbjct: 36  RLSHIEMAQKIQSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVNRWTRAYGYQQIRTPIVE 95

Query: 76  SADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
              L+V S     D  GKEM   +D ND   +                     N P   +
Sbjct: 96  QTGLFVRSIGEETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLW 155

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKS 192
            +   FR E   +    R R+F      +     P+            + ++  R  L  
Sbjct: 156 YMGPMFRRERPQKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTL 212

Query: 193 IPMRA---ESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
                   E          E++   +    +    +     P+   +T   D+  + +  
Sbjct: 213 EINSLGNREERAAHRAALVEYLTRYEDKLDED-SKRRLKTNPLRVLDTKNPDLQEICNAA 271

Query: 250 EQWTAPYAATSDVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSL 296
            +        S  H  +                 L        + +        G + ++
Sbjct: 272 PRLVDYLGEASQNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATV 331

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
                + G   +       S G         ++ S +    +     V            
Sbjct: 332 CGGGRYDGLIEELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGERA--- 388

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
            D             L   G +V      + + +Q   AD  G    +IV    +++  V
Sbjct: 389 -DLQVMKYA----QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTV 443

Query: 417 EIKHRLTGI-REDMSLEEVINYASH 440
            +K       ++ ++ E++ +    
Sbjct: 444 TLKDMNGAHGQQTVAAEDLTHTLQQ 468


>gi|76798465|ref|ZP_00780702.1| seryl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|76799387|ref|ZP_00781541.1| seryl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|76585255|gb|EAO61859.1| seryl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|76586166|gb|EAO62687.1| seryl-tRNA synthetase [Streptococcus agalactiae 18RS21]
          Length = 381

 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    + + + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 121 FYKGLGARLERAIYSFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKED---TFELA 177

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 178 DSPFVLIPTAEVPLTNYYRDEIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 237

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 238 KVEMVKFAKPEESYQELEKMT-ANAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 296

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 297 PAQNTYREISSCSNTEDFQARRAQIRYRD 325


>gi|320161762|ref|YP_004174987.1| seryl-tRNA synthetase [Anaerolinea thermophila UNI-1]
 gi|319995616|dbj|BAJ64387.1| seryl-tRNA synthetase [Anaerolinea thermophila UNI-1]
          Length = 424

 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 65/214 (30%), Gaps = 12/214 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    + A + +   R G  E  +P +   D    SG+   +   +    +     + 
Sbjct: 169 GARLQRALIAWMLDLHIRQGYREAYLPFMVKGDTLYASGQLPKFRDNLYHDIEE---DLW 225

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMRSREFLMKDAY 161
             PT E  +T +    +   + LP  +      FR E         G+ R  +F   + Y
Sbjct: 226 MVPTAEVPLTGLHMGEVLDEKQLPLRYTAYTPCFRREKMSAGRDVRGIKRGHQFDKVEMY 285

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
            +    +  K     +     +    LGL    ++  +    GDL     +  D      
Sbjct: 286 IYSKPEDSMKELQKMLAD-AEQTCAELGLAYRVVQLCT----GDLGFGAAITYDLEVWAP 340

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
            C +      + ++         +    E    P
Sbjct: 341 GCGEWLEVSSVSNDTDFQARRAGIKYRPEDGGKP 374


>gi|229197435|ref|ZP_04324162.1| Histidyl-tRNA synthetase 1 [Bacillus cereus m1293]
 gi|228586059|gb|EEK44150.1| Histidyl-tRNA synthetase 1 [Bacillus cereus m1293]
          Length = 428

 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 129/433 (29%), Gaps = 53/433 (12%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 14  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 73

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 74  GKRGLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 128

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 129 VDIVGVESVMAEAELMSMAFELFQTLNLEVTIQYNNRKLLNGILQAINIPTELTSDVILS 188

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDF-DDIISLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT      +S+    E +  P  A      
Sbjct: 189 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLQLSIADFKEAFNNPLVADGVNEL 248

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           ++L   L       A GI    IF       L M                 S G G  R 
Sbjct: 249 QQLQQYL------IALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGG-RY 301

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARL 372
              +     D              +    +   + V   A            C +I  +L
Sbjct: 302 DNIIGAFRGDDMNYPTVGISFGLDVIYTALSQKETVSSTADVFIIPLGTELQCLQIAQQL 361

Query: 373 SK---VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                +  ++         G +   A    +    P  +I+G + +S   V +++   G 
Sbjct: 362 RSTTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTETVVLRNMKEGS 415

Query: 426 REDMSLEEVINYA 438
              + L  + NY 
Sbjct: 416 EVKVPLSSLSNYL 428


>gi|333029871|ref|ZP_08457932.1| Histidyl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
 gi|332740468|gb|EGJ70950.1| Histidyl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
          Length = 455

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLG 399
               A F   L+ I   ++     C K+  ++ K G       D G ++  Q   A+   
Sbjct: 356 YPKDALFGSQLLFINFGEKEA-AYCLKVLTKVRKAGIRAEIYPDFGAKMKKQMTYANNNQ 414

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                +VG   +++ K+ +K+  TG ++ +++EE++N    
Sbjct: 415 VAFVAMVGENEMAEGKISLKNMETGEQKAVTIEELVNIIKK 455


>gi|325202359|gb|ADY97813.1| histidyl-tRNA synthetase [Neisseria meningitidis M01-240149]
 gi|325207889|gb|ADZ03341.1| histidyl-tRNA synthetase [Neisseria meningitidis NZ-05/33]
          Length = 431

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 114/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQVFEDTVNRWTRAYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEDKLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGERA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++ E++ +    
Sbjct: 414 QTVAAEDLTHTLQQ 427


>gi|255023635|ref|ZP_05295621.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL J1-208]
          Length = 400

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/394 (12%), Positives = 102/394 (25%), Gaps = 22/394 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    +         E+  P  +  +L+        D   KEM    D+  +++   
Sbjct: 13  WHFLETEFKNVCENYQYEEIRTPVFEHTELFERGVGDSTDIVSKEMYTFQDKGGRSLTLR 72

Query: 108 PTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   F  H      + P   Y  +  FR E        R R+F      +    
Sbjct: 73  PEGTASVVRAFVEHKLYGEVSQPIKMYYNEPMFRYERPQGG---RQRQFTQMGIEALGSD 129

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF-----IVLADTGETQV 221
                          +  F ++GL +I +   S                       E   
Sbjct: 130 DPSIDVEV---ISLAMTFFKKIGLTNIKLVINSLGDKESRLKHREALVAHFEPHIDEFCA 186

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENK 275
            C       P+   +   D    L              S  + E + + L       E  
Sbjct: 187 ECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLNEESVAYFENVKNYLNALEIPFEID 246

Query: 276 RVSARGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
               RG++      F   +      + T     G+ H +     G     +   +     
Sbjct: 247 PTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREFGGPDTPGIGFGIGVERI 306

Query: 334 DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                     +   K   + +             +  +L +       D +  +  +Q  
Sbjct: 307 LLALEKADIEIPAKKPLEVYVITAQPEAELKAVTLXNKLRQKALVQKKDYLKRKFKAQLK 366

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            A+       +I+G + +     ++K+  TG +E
Sbjct: 367 DANRKNAVYTIILGEEELQTGNYQLKNMETGEQE 400


>gi|188997175|ref|YP_001931426.1| histidyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932242|gb|ACD66872.1| histidyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 410

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/404 (13%), Positives = 110/404 (27%), Gaps = 26/404 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    R+        E+ +P ++   L+  S     D   KEM    D+  + +   
Sbjct: 22  YRYIVETFRKTFLDYNFQEIILPYVEDISLFKRSVGEATDIVQKEMYIFTDKGGREVALR 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         +              +     FR E        R R+F    A  F ++ 
Sbjct: 82  PEGTAGCVRAYIEEKMYAEGGYHKLFYEGAMFRYERPQAG---RYRQFHQIGAEIFGVSS 138

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCSK 225
             +      M    L+         I    +  S         E++   +    Q  C +
Sbjct: 139 YLADVELISMVYKILKYLKIDFRLEINTLGDFQSRKEYISKLIEYLKKYENSLCQD-CRR 197

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE------NKRVSA 279
              + P+   +   +    +     + T   +  +    EK+ +SL              
Sbjct: 198 RIHENPLRVLDCKVESCKEITKDAPKITESLSKEAIERFEKIKESLKAIGVDFIENPRLV 257

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG++      F        S     A G+   +     G     +  A            
Sbjct: 258 RGLDYYTHTVFEFISQEIGSQGTIAAGGRYDNLAEQLGGPPTPALGFAAGIERLILLVKD 317

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            P         +I +  +  +      K+  +  +             + S    A+   
Sbjct: 318 LPPEKPLIV--IIPLNQNYYIQ---ALKLSEKTREKHIQTELLLKEGSLKSMLKTANKFN 372

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIRED-MSLEEVINYASHRF 442
               + V  K      +E+K   +G +E  ++ E++I+    + 
Sbjct: 373 AKYVIFVSDK------LELKDMTSGDQEIFINEEDLIDVLLSKL 410


>gi|78188671|ref|YP_379009.1| seryl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
 gi|123580121|sp|Q3ASQ9|SYS_CHLCH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78170870|gb|ABB27966.1| seryl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
          Length = 426

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 71/226 (31%), Gaps = 10/226 (4%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
              G   ++  G +    +   + +    + G  E+  P L + +    +G++  +  ++
Sbjct: 163 SGAGFPVYVGKGARLERALINFMLDMHTEQHGYTEVFPPFLVNQESLRGTGQWPKFADQV 222

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
             +    +  +   PT E  +T++ R  +     LP ++      FR E     +   G 
Sbjct: 223 YYI---GEDDLYAIPTAEVPLTNLHRGEMVETNALPISYTAYTACFRREAGSYGKDTRGF 279

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL-SH 208
           +R  +F   +   F    +       ++      I   L +    +   SG I  +    
Sbjct: 280 LRVHQFNKVEMVKFTRPEDSYTAL-EEIRHHAQAILEALKIPYRVLLLCSGDISANATKC 338

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
             I +    E +   +    +F               +    ++  
Sbjct: 339 YDIEVWSPAEEKYLEASSCSNFEEYQARRSNIRFKPDSKSKPEFVH 384


>gi|33866426|ref|NP_897985.1| seryl-tRNA synthetase [Synechococcus sp. WH 8102]
 gi|46577187|sp|Q7U518|SYS_SYNPX RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|33633204|emb|CAE08409.1| putative seryl-tRNA synthetase [Synechococcus sp. WH 8102]
          Length = 425

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 14/232 (6%)

Query: 9   PILQENPRDAEIASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           P  +E   +    + +L L      +        + +  G +    +   + +     G 
Sbjct: 134 PRQEEGLEEHWQIAERLHLFDTERSVRIAQSRFVTLMGQGARLERALINFMLDLHTSKGY 193

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P L ++     SG+   +  +  R +   +  +   PT E  +T + R  I    
Sbjct: 194 REVMPPVLVNSASLTGSGQLPKFADDCFRCS---EDDLWLTPTAEVPVTSLHRDEIIPAD 250

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP  +      FR E     R   G++R  +F   + Y F   P+ S  ++ ++     
Sbjct: 251 QLPLRYAAYSPCFRREAGSYGRDTRGLIRLHQFNKVELYWF-AHPDHSAEAHAQITADAE 309

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDF 230
            +   L L    +   +  IG         E  +       ++       DF
Sbjct: 310 AVLQALELPYRVLDLCTADIGFSAQRTYDLEVWLPGAEAYREISSCSVCGDF 361


>gi|255513318|gb|EET89584.1| histidyl-tRNA synthetase [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 423

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/413 (12%), Positives = 123/413 (29%), Gaps = 41/413 (9%)

Query: 52  NVNAIIREEQNRTGAIEMSVPTLQSADLWVES---GRYDSYGKEMLRLADRNDKAMIYGP 108
            + ++ R      G + +S P ++S  +       G  +    E+             G 
Sbjct: 27  KIESVFR----AFGFLTISTPKIESLKILKGKSAIGEDEKLIYELK--------EEELGL 74

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
            +++ ++      + +   LPF  Y I   +R +       +R REF   D         
Sbjct: 75  RYDQTVSLARYFIMHNNLPLPFKRYAIGEAWRMDEPQ---HLRYREFTQADVDIIGGERS 131

Query: 169 GSKHSYNKMFVSYLRIFHRLG------LKSIPMRAESGPIGGDLSHEFIVLADTGETQ-V 221
                      S L                +    ++  +  D   E + + D  +    
Sbjct: 132 LCDAEVVATIASALDALDIKYEVLVNSRVLMEDMLDAFGVPEDKHIEVMRIIDKLDKAGS 191

Query: 222 FCSKDFMDFP-------------IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
                 ++               + ++ T+ + +       +   A     + +   K +
Sbjct: 192 DGVNQMLEKAGMDSEQRLKVVNFVGAKGTNEEKLKYAKDFAKGSGACDELGNMIELVKKY 251

Query: 269 DSLPENKR--VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
               E K      RGI+      F  + +   +       G  +   + +YG  ++  V 
Sbjct: 252 PIKGELKVDFSIVRGIDYYTGMVFEIRAAEEGAPIQSLCGGGRYDKLIENYGGKSIPAVG 311

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
             I        + +  S               +   D    +  +L + G +   +    
Sbjct: 312 GTIGVDRVLDLLKFSYSKRYTFAKAFVAYIRKENY-DYALSVANKLRENGINTEINLADR 370

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            I +Q +    +     VIVG     + KV++++ ++G  E + L+ ++    
Sbjct: 371 NISNQLSYISSMNIEYAVIVGDIEQKEGKVKLRNMVSGDEEVIGLDVLVQKLK 423


>gi|225851404|ref|YP_002731638.1| histidyl-tRNA synthetase [Persephonella marina EX-H1]
 gi|225645504|gb|ACO03690.1| histidyl-tRNA synthetase [Persephonella marina EX-H1]
          Length = 411

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/405 (14%), Positives = 113/405 (27%), Gaps = 26/405 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              V    RE   R    E+ +P ++   L++ S     D   KEM    DR  + +   
Sbjct: 21  YRYVVDKAREVFERYNFEEIILPYVEDVSLFIRSVGEETDIVQKEMYVFEDRGGRKVALR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         +       +      +     FR E        R R+F    A  F +  
Sbjct: 81  PEGTASAVRAYIEEGLYAKGGYQKLFYEGAMFRYERPQAG---RYRQFHQIGAEIFGVDT 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFIVLADTGETQVFCSK 225
             +     KM    L          I      +S  +  +    F+   +       C K
Sbjct: 138 PLADAELIKMVKDILDSLRIDVRLEINSLGDFDSRKLYVEKLKVFLKEREELLCDD-CRK 196

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKRVSA 279
                P+   +   ++               +  S    EKL + L       +      
Sbjct: 197 RIERNPLRVLDCKVEECKRATEDAPVILDFLSEKSAERFEKLKEYLTGLGIDYKVNPRLV 256

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG++      F        +     A G+   +     G     +  A            
Sbjct: 257 RGLDYYTDTVFEFITDKIGAQGTVAAGGRYDTLVKQLGGPDTPALGFAAGIERLMLLLEE 316

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
            P+  +   +  +    + +       K   +L + G           + S+  +A+ + 
Sbjct: 317 LPEERSVVVVIPVISDFNLE-----ALKTAEKLRESGIKTELVLKEGSLKSRMKLANKIK 371

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEEVINYASHRFS 443
               + V  K       E+K   TG +E   +++++I     R S
Sbjct: 372 GKFVIFVSEKP------ELKDMGTGEQEAFDNIDDLIEVLKGRVS 410


>gi|160900450|ref|YP_001566032.1| histidyl-tRNA synthetase [Delftia acidovorans SPH-1]
 gi|160366034|gb|ABX37647.1| histidyl-tRNA synthetase [Delftia acidovorans SPH-1]
          Length = 431

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/407 (13%), Positives = 110/407 (27%), Gaps = 30/407 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      + + A +RE   R     +  P ++   L+V   G   D   KEM  
Sbjct: 12  GMNDILPAESARWEWLEAQVRELMARFAYRNVRTPIVEHTQLFVRGIGEVTDIVEKEMYS 71

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+ +   +                     +     + +   FR E   R    +  + 
Sbjct: 72  FEDKLNGERLTLRPEGTASLVRATIENNLLYDGGKRMWYMGPMFRHERPQRGRYRQFHQI 131

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGL-----KSIPMRAESGPIGGDLSHEF 210
             +         +             L +           +    +A    +   L    
Sbjct: 132 GAEALGFAGPDVDAELIMLAVSLWKQLGLTQWRLEINSLGQPEERQAHRQALIAYLEQHQ 191

Query: 211 IVLADTGETQVFCSK-DFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHNEKLF 268
            V+ +  + +++ +    +D   P+     +     L+ + E   A +     + +    
Sbjct: 192 DVMDEEAKRRMYSNPLRVLDTKNPAMQEMVNGAPRLLDFLGEGSLAHFDGLKAILDANGV 251

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKY-------SLPMSATFKGADGKDHYVQMGSYGIGA 321
                 + V         +F F T                +              + +G 
Sbjct: 252 PWTVNPRLVRGLDYYNLTVFEFITDMLGSQGTICAGGRYDYLIEQVGGKSAPAVGWALGV 311

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            RV+  V E   D        +      +++     D        +   +L + G  V  
Sbjct: 312 ERVLELVKELGTDI------PAPTLHAYAIVP----DVAAMPVALRTLQQLREAGVRVQM 361

Query: 382 DD-MGEQIGSQ---FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
                E +GS    F  AD  G    +I GS  +    V +K    G
Sbjct: 362 HAASAEGMGSMKSQFKKADASGAHFALIFGSDELQQGLVTVKSLRDG 408


>gi|104780241|ref|YP_606739.1| histidyl-tRNA synthetase [Pseudomonas entomophila L48]
 gi|123079257|sp|Q1IEI0|SYH_PSEE4 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|95109228|emb|CAK13925.1| histidyl-tRNA synthetase [Pseudomonas entomophila L48]
          Length = 428

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/425 (11%), Positives = 117/425 (27%), Gaps = 27/425 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP            +    +  G  ++  P ++  +L+  S G   D   KEM  
Sbjct: 10  GMNDILPDQSPLWRYFEGTVAGLLDSYGYSQIRTPIVEFTELFKRSIGEVTDIVEKEMYT 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D  D ++   P            H           + +   FR E RP+ G  R    
Sbjct: 70  FQDNKD-SLTLRPEGTAACVRAVLEHGIIGNGQVQKLWYVGPMFRHE-RPQLGRYRQFHQ 127

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
           +  + ++       ++       +  L          +     S       D   EF+  
Sbjct: 128 IGVEVFNLAGPDIDAELIMLTWRLWALLGIQDAVTLELNSLGTSEARARYRDALVEFLSQ 187

Query: 214 A------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW--TAPYAATSDVHNE 265
                  D+           +D               L   +++          + +   
Sbjct: 188 RIDQLDEDSQRRLKSNPLRILDSKNEGTQAALVGAPKLEEYLDEESRVHFEGVKARLDAA 247

Query: 266 ----KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                +   L       ++ +        G + ++     + G   +         G   
Sbjct: 248 GIPFVINTKLVRGLDYYSKTVFEWVTDKLGAQGTVCAGGRYDGLVEQMGGKPTAGVGFAM 307

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDV 379
                 ++  +          ++  +  +        +    A  KI  +L        +
Sbjct: 308 GIERLLLLIETLGQVPESISRTIDVYLCAFG------EQAELAGLKISEQLRDRLPNLRL 361

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYA 438
             +  G    +QF  AD  G    +I+G   ++  ++ +K  R  G +++++ + +  + 
Sbjct: 362 AVNAGGGNFKNQFKKADKSGALFALILGDDELAKQEIGVKPLRGQGEQQNIAWDALAAHL 421

Query: 439 SHRFS 443
               +
Sbjct: 422 ETAIA 426


>gi|222823750|ref|YP_002575324.1| histidyl-tRNA synthetase [Campylobacter lari RM2100]
 gi|254782323|sp|B9KG88|SYH_CAMLR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|222538972|gb|ACM64073.1| histidyl-tRNA synthetase [Campylobacter lari RM2100]
          Length = 408

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/400 (15%), Positives = 105/400 (26%), Gaps = 15/400 (3%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAM 104
               + V     E     G   ++ P L+   L+  S     D  GKEM    D+    +
Sbjct: 16  ATLYEKVVKTCEEVAKNYGFTFINCPHLELTKLFKRSVGESSDIVGKEMYEFVDKAGNDV 75

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD 164
              P     +   +             ++     FR E   +    R REF      SF 
Sbjct: 76  CLRPEGTAGVVRSYIEAKMDKNQSVKRWFYHGSMFRYERPQKG---RLREFHQFGVESFG 132

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCS 224
           +       S   M     +         I        +G         L         C 
Sbjct: 133 VESVYEDASIILMLDEIFKRLKIHTNLKINSLGCKECMGVYKEKLIAFLNSKDGFCEDCL 192

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE------NKRVS 278
           +     PI   +   D   +L     + +           EKL   L E           
Sbjct: 193 RRKELNPIRVLDCKNDHCQNLIKNAPKLSENLCPCCKKDYEKLQKILSENGIEFECDEKL 252

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RG++      F        +       G+   +     G     V  A+          
Sbjct: 253 VRGLDYYSKSAFEFISDEIGAKAAVAGGGRYDRLIEYLDGKSGYGVGFAMGIERIMAILE 312

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
              D      I L  +   D+   D   K+   L K    V+     +++      AD  
Sbjct: 313 QKQDIKKRNGIYLCAM---DEAYIDTIFKLANTLRKKH-KVYLSYEAKKLAKHLNQADNA 368

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
              + + +G   +   ++  K+  T   +++ +  + N  
Sbjct: 369 NAKIFLCIGEDEMQKEEIFYKNLDTKENKNIKIANLENEL 408


>gi|325144119|gb|EGC66426.1| histidyl-tRNA synthetase [Neisseria meningitidis M01-240013]
          Length = 431

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 113/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVNRWTRAYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEDKLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G          + S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLFLVSEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRTQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++ E++ +    
Sbjct: 414 QTVAAEDLTHTLQQ 427


>gi|254670448|emb|CBA06083.1| Histidyl-tRNA synthetase [Neisseria meningitidis alpha153]
          Length = 431

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 113/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVGRWTRAYGYRQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIITMSADLWEKLSIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEDKLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++   +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVGEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++ E++ N    
Sbjct: 414 QTVAAEDLTNTLQQ 427


>gi|195977559|ref|YP_002122803.1| seryl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|238689799|sp|B4U1C3|SYS_STREM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|195974264|gb|ACG61790.1| seryl-tRNA synthetase SerS [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 425

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 88/260 (33%), Gaps = 21/260 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     + +
Sbjct: 165 FYKNLGARLERALYNFMLDEHLKEGYQEIIPPYMVNHDSMFGTGQYPKFKED---TFELD 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 GTNFVLIPTAEVPLTNYYRGDIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F                +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPETSYDELEKMT-ANAEHILQKLKLPYRVLALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD----IISLNSIVEQWTAPYAAT-----SDVH 263
            A     ++    +  DF        + D     + L   +         T      +  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEADGKVKLLHTLNGSGLAVGRTVAAILENYQ 400

Query: 264 NEKLFDSLPENKRVSARGIE 283
           NE    ++PE  R    G+E
Sbjct: 401 NEDGSVTIPEVLRPYMGGLE 420


>gi|319744352|gb|EFV96713.1| serine--tRNA ligase [Streptococcus agalactiae ATCC 13813]
          Length = 425

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    + + + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKGLGARLERAIYSFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DSPFVLIPTAEVPLTNYYRDEIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|297664841|ref|XP_002810829.1| PREDICTED: probable prolyl-tRNA synthetase, mitochondrial-like
           [Pongo abelii]
          Length = 139

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 8/135 (5%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACEKIYAR 371
           MG YG+G  R++AA IE       + WP  +AP++  LI  K    ++   +   ++Y  
Sbjct: 1   MGCYGLGVTRILAAAIEVLSTEDCVRWPSLLAPYQACLIPPKKGSKEEAASELIGQLYDH 60

Query: 372 LSKV----GCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSK-VEIKHRLTGI 425
           +++       +V  DD     IG++   A+  G+P  +I G + + D    E+  + TG 
Sbjct: 61  ITEAVPQLHGEVLLDDRTHLTIGNRLKDANKFGYPFVIIAGKRALEDPAHFEVWCQNTGE 120

Query: 426 REDMSLEEVINYASH 440
              ++ + V++  + 
Sbjct: 121 VVFLTKDGVMDLLTQ 135


>gi|296192941|ref|XP_002744290.1| PREDICTED: histidyl-tRNA synthetase, cytoplasmic [Callithrix
           jacchus]
          Length = 507

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 61/486 (12%), Positives = 131/486 (26%), Gaps = 62/486 (12%)

Query: 11  LQENPRDAEIA----SHKLMLRTG---------MIHQHSKGIYSWLPLGQKALDNVNAII 57
           L++    AE+     +  L L+            + +  KG   + P      + V  II
Sbjct: 21  LKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKGTRDYSPRQMAVREKVFDII 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +    +G+Y    K +  L D+  + +             
Sbjct: 81  IRCFKRHGAEVIDTPVFELKETL--TGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEGSKHSYNK 176
                 +   L         K      P     R REF   D     +  P        K
Sbjct: 137 ---RYLAMNKLNNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLK 193

Query: 177 MFVSYLRIFHR-------------LGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQV 221
           +    L                   G+ +I    +S    I   +     V  +  + ++
Sbjct: 194 IMCEILSSLQIGDFLVKVNDRRILDGMFAICGVPDSKFRTICSSVDKLDKVSWEEVKNEM 253

Query: 222 FCSK--------------------DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD 261
              K                      ++  +       +          +    Y A   
Sbjct: 254 VGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLRDLKLLFEYLALFG 313

Query: 262 VHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           + ++  FD SL          I    +     +           A G  +   +G +   
Sbjct: 314 IDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPK 373

Query: 321 AMRVVAAVIESSHDGKGIIWPD----SVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
             +V    +    +    +              + + + +  +   +   K+ + L   G
Sbjct: 374 GRKVPCVGLSIGVERNFYLPLPQALEEKVRTTETQVLVASAQKKLLEERLKLVSELWDAG 433

Query: 377 CDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                      ++ +Q    +  G PL  I+G + + D  ++++   +    D+  E+++
Sbjct: 434 IKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLV 493

Query: 436 NYASHR 441
                R
Sbjct: 494 EEIKRR 499


>gi|295133970|ref|YP_003584646.1| histidyl-tRNA synthetase [Zunongwangia profunda SM-A87]
 gi|294981985|gb|ADF52450.1| histidyl-tRNA synthetase [Zunongwangia profunda SM-A87]
          Length = 456

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/450 (13%), Positives = 126/450 (28%), Gaps = 55/450 (12%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRY-DSY 89
           P G +          + +   I+ E  + G   +  P+ +++D        E  R     
Sbjct: 8   PKGTRDFTPQEVAKRNYIFDSIKTEFKKFGFQAIETPSFENSDTLMGKYGEEGDRLIFKI 67

Query: 90  GKEMLRLADRNDKAMIYGPTHEEV-----------MTDIFRSHIKSYRNLPFTFYQIQLK 138
                 L   ++KA     + +             +T  F  ++  ++N     ++    
Sbjct: 68  LNSGDFLKKADEKAYADKDSLKLTPSISEKALRYDLTVPFARYVVQHQNEIDFPFKRYQI 127

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-- 196
                  R    R REF   DA          +  + +++ S     +  G+        
Sbjct: 128 QPVWRADRPQKGRFREFYQCDADVVGSDSLWQEVEFVQLYDSVFSALNLNGVTIKINNRK 187

Query: 197 ----AESGPIGGDLSHEFIVLADT-------GETQVFCSKDFMDFPIPSENTDFDDIISL 245
                       D   +F V  D        G  +   SK   +  I      FD     
Sbjct: 188 ILSGFAEVIGEQDKLIDFTVALDKLDKIGEDGVVKEMLSKGISEEAIAKIKPIFDLKGDF 247

Query: 246 NSIVEQWTA----------PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
              +E   A                 + N  L   L          +  G  +Y G  + 
Sbjct: 248 AEKIEALKAILSTSEVGLKGIEELEFIQNAILEMPLKTANLDLDVTLARGLNYYTGAIFE 307

Query: 296 LPMSATFK-GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI-----IWPDSVAPFKI 349
           +      K G+ G        +   G   +    I    D   +               +
Sbjct: 308 VAAPDEVKMGSIGGGGRYDDLTGIFGLKNMSGVGISFGLDRIYLVLEELNLFPEAVADDV 367

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++ +   ++       K    +   G +        ++  Q   A+    P  ++ G +
Sbjct: 368 KVLFVNFGEKEAL-YAFKGVNAIRAEGVNAEVFPDAAKMKKQMNYANKRNIPFVILAGDE 426

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +   +  +K+  TG ++ ++L+E++   +
Sbjct: 427 EMKAGEYTLKNMKTGEQDRLTLKELVAKIA 456


>gi|77409224|ref|ZP_00785933.1| seryl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77172167|gb|EAO75327.1| seryl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 425

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    + + + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKGLGARLERAIYSFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DSPFVLIPTAEVPLTNYYRDEIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|22536539|ref|NP_687390.1| seryl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|25010417|ref|NP_734812.1| seryl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|76787984|ref|YP_329077.1| seryl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|76798994|ref|ZP_00781192.1| seryl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77406550|ref|ZP_00783601.1| seryl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|77411466|ref|ZP_00787811.1| seryl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|54039691|sp|P67566|SYS_STRA5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|54042042|sp|P67565|SYS_STRA3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123602391|sp|Q3K326|SYS_STRA1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|22533373|gb|AAM99262.1|AE014208_2 seryl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|23094769|emb|CAD45988.1| seryl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|76563041|gb|ABA45625.1| seryl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|76585644|gb|EAO62204.1| seryl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77162469|gb|EAO73435.1| seryl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|77174857|gb|EAO77675.1| seryl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 425

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    + + + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKGLGARLERAIYSFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DSPFVLIPTAEVPLTNYYRDEIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|260221252|emb|CBA29630.1| Histidyl-tRNA synthetase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 437

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 61/432 (14%), Positives = 122/432 (28%), Gaps = 44/432 (10%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   +P    A + + A +R+   R     +  P ++   L+V   G   D   KEM  
Sbjct: 18  GMNDIMPPESAAWEALEARVRDLMRRFAFENVRTPIVEPTSLFVRGLGEVTDIVEKEMYS 77

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +   +                     N P   Y +   FR E   R    R R+F
Sbjct: 78  FEDRLNGEALTLRPENTAGVVRAAVEHSMLYNGPKRLYYMGPMFRHERPQRG---RYRQF 134

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
               A +                +    ++  LGL  I ++  S   P   +L    ++ 
Sbjct: 135 HQIGAEALGFGGAEIDAEV---ILMAHMLWKELGLTDIELQINSLGQPDERNLHRAALIQ 191

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE---QWTAPYAATSDVHNEKLFD- 269
                  +   +      +            +  ++E   +        S  H E +   
Sbjct: 192 HFELHLDLLDEEAKRRLHLNPLRLLDSKNPGMQGVIESAPKLIDFLGDASREHLETVKKI 251

Query: 270 ------------SLPENKRVSARGIEVGHIFYFGTKYSLPM--SATFKGADGKDHYVQMG 315
                        L          +        G++ ++       +             
Sbjct: 252 LDAHRVSYTVNPRLVRGMDYYNLTVFEFVTTKLGSQGTVCAGGRYDYLIEQIGGKPAPAV 311

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            + +G  RV+  + ES                 ++ +                   L + 
Sbjct: 312 GWAMGVERVLELIKESGVALMQPGLDVFAVITDVANLQAVMPSLQV----------LREA 361

Query: 376 GCDVFWDDM-GE---QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RLTGI-REDM 429
           G  V       E    + SQF  AD  G     + G   ++  +V +K  R + + +  +
Sbjct: 362 GLSVQMQASTSEGMPSMKSQFKRADASGARFAFVFGPDELASGQVTVKSLRDSNVPQATL 421

Query: 430 SLEEVINYASHR 441
            ++E+ ++A+  
Sbjct: 422 RIDEMASWAASL 433


>gi|225869921|ref|YP_002745868.1| seryl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
 gi|254783047|sp|C0M858|SYS_STRE4 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|225699325|emb|CAW92703.1| seryl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
          Length = 425

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 89/260 (34%), Gaps = 21/260 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     + +
Sbjct: 165 FYKNLGARLERALYNFMLDEHLKEGYQEIIPPYMVNHDSMFGTGQYPKFKED---TFELD 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
               +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 GTNFVLIPTAEVPLTNYYRGDIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F       +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPETSYEELEKMT-ANAEHILQKLKLPYRVLALCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD----IISLNSIVEQWTAPYAAT-----SDVH 263
            A     ++    +  DF        + D     + L   +         T      +  
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRDEADGKVKLLHTLNGSGLAVGRTVAAILENYQ 400

Query: 264 NEKLFDSLPENKRVSARGIE 283
           NE    ++PE  R    G+E
Sbjct: 401 NEDGSVTIPEVLRPYMGGLE 420


>gi|319410211|emb|CBY90550.1| histidyl-tRNA synthetase (histidine-tRNA ligase; HisRS) [Neisseria
           meningitidis WUE 2594]
          Length = 431

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 113/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVGRWTRTYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNFLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEDKLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++  ++ N    
Sbjct: 414 QTVAAADLTNTLQQ 427


>gi|319794357|ref|YP_004155997.1| histidyL-tRNA synthetase [Variovorax paradoxus EPS]
 gi|315596820|gb|ADU37886.1| histidyl-tRNA synthetase [Variovorax paradoxus EPS]
          Length = 436

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 127/422 (30%), Gaps = 34/422 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      + + A +RE+  R     +  P L+   L+V   G   D   KEM  
Sbjct: 10  GMNDILPPESARWEWLEATVREQMGRFAYRNVRTPILEHTALFVRGIGEVTDIVEKEMYA 69

Query: 96  LADRNDK-----AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
             DR+DK      +   P +   +      H   Y   P   +     FR E   R    
Sbjct: 70  FEDRSDKHGQAEHLAMRPENTAGLVRAVIEHNMLYDG-PRRLWYTGPMFRREKPQRG--- 125

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYN----KMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           R R+F    A +                  ++ +      RL L S+   AE       L
Sbjct: 126 RYRQFHQIGAEALGFAGPDVDAELILLASALWKAIGLTDVRLELNSLGQPAERALHRAQL 185

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
              F   AD  +      +     P+   +T    +  +     + +    A S  H E 
Sbjct: 186 IAHFEQHADKLDED--GKRRLHSNPLRILDTKNPAMKDVVESAPKLSEFLGAESRAHFEG 243

Query: 267 LFDSLPENKRVSA------RGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
           L   L  N           RG++     +F F T     + A      G  +   +   G
Sbjct: 244 LQAILQANGITYTINPRLVRGLDYYNLTVFEFVTD---RLGAQGTVCGGGRYDGLIEQIG 300

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD 378
                 V   +        +    +  P           D        +   +L + G  
Sbjct: 301 GKPAPAVGWAMGVERVLDLLKEQGADIPVPAPDAYAVVPDAGAMPLVLRTLQQLREAGVR 360

Query: 379 VFWD-DMGE---QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH-RL-TGIREDMSLE 432
           V       E      SQ   AD  G    +I G+  ++  +V +K  R  +G +    L 
Sbjct: 361 VQMHGATAEGLASFKSQMKKADNSGATYALIFGADELARGEVTLKSLRDGSGAQIARPLA 420

Query: 433 EV 434
           EV
Sbjct: 421 EV 422


>gi|296139658|ref|YP_003646901.1| histidyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
 gi|296027792|gb|ADG78562.1| histidyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
          Length = 441

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/396 (15%), Positives = 117/396 (29%), Gaps = 32/396 (8%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   + +P  +   L+        D   KEM   ADR D+++   P     +      H
Sbjct: 43  AGYGYIELPIFEDTSLFARGVGESTDVVAKEMYTFADRGDRSVTLRPEGTAGVVRAVLQH 102

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
                 LP         FR E RP+ G  R  +  +         P            +Y
Sbjct: 103 GLDRGQLPVKAAYAGPFFRYE-RPQEGRYRQLQ-QVGIEAIGVDDPALDAEVIAVADRAY 160

Query: 182 LRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGET-----QVFCSKDFMDFPIPS 234
             +        +    +    P   +   EF+   D  E      ++   +   D     
Sbjct: 161 RSVGLDGFRLEVSSLGDETCRPQYREKLQEFLFALDLDEETRRRAEINPLRVLDDKRPEV 220

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY----- 289
           +    D  + ++++  +    +       +      +   + V          F      
Sbjct: 221 KAMTADAPLMIDNLTPEPKEHFEKVLGYLDALGVPYVVNPRLVRGLDYYTKTCFEFVHDG 280

Query: 290 FGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
            G +  +     + G     G    V    +G+G  R + A+              +   
Sbjct: 281 LGAQSGIGGGGRYDGLVEQLGGREGVTGVGFGLGVDRTLLALAA------EGKRAPAAPR 334

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGC--DVFWDDMGEQIGSQFAVADLLGFPLQV 404
                + +       RDA   +  RL  +G   D+ + +   + G+    AD  G    +
Sbjct: 335 VVAFGVPLG---DDARDAMVPLLGRLRALGVPSDMAYGNRAMK-GAM-KAADRSGARFAL 389

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           I+G   ++D  V +K    G +  + L+ V    + 
Sbjct: 390 ILGDSELADGVVMLKDLANGEQRAVPLDTVAGVIAS 425


>gi|70794762|ref|NP_001020585.1| histidyl-tRNA synthetase, cytoplasmic [Rattus norvegicus]
 gi|67678042|gb|AAH97969.1| Histidyl-tRNA synthetase [Rattus norvegicus]
 gi|149017268|gb|EDL76319.1| dead end homolog 1 (zebrafish) [Rattus norvegicus]
          Length = 508

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 65/495 (13%), Positives = 133/495 (26%), Gaps = 66/495 (13%)

Query: 11  LQENPRDAEIA----SHKLMLRTGMIHQHSK---------GIYSWLPLGQKALDNVNAII 57
           L+E    AE      +  L L+  + H   K         G   + P      + V  +I
Sbjct: 21  LKEQKASAEQIEEEVTKLLKLKAQLGHDEGKQKFVLKTPKGTRDYSPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +    +G+Y    K +  L D+  + +             
Sbjct: 81  IRCFKRHGAEVIDTPVFELKETL--TGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL-TPEGSKHSYNK 176
                 +   L         K      P     R REF   D        P        K
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLK 193

Query: 177 MFVSYLRIFHR-------------LGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQV 221
           +    L                   G+ ++    +S    I   +     V  +  + ++
Sbjct: 194 IMCEILSSLQIGNFQVKVNDRRILDGMFAVCGVPDSKFRTICSSVDKLDKVSWEEVKNEM 253

Query: 222 FCSKDFMDFPIP---------------SENTDFDDIISLNSIVEQWTA-----PYAATSD 261
              K                        +      +      VE          Y     
Sbjct: 254 VGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQAVEGLGDLKLLFEYLTLFG 313

Query: 262 VHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           + ++  FD SL          I    +    T+           A G  +   +G +   
Sbjct: 314 IDDKISFDLSLARGLDYYTGVIYEAVLLQMPTQAGEEPLGVGSIAAGGRYDGLVGMFDPK 373

Query: 321 AMRVVAAVIESSHDGKGIIW------PDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             +V    +    +    I        +       + + + +  +   +   K+ + L  
Sbjct: 374 GRKVPCVGLSIGVERIFSIVEQKLEASEEKVRTTETQVLVASAQKKLLEERLKLISELWD 433

Query: 375 VGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G           ++ +Q    +  G PL  I+G + + D  ++++   +    D+  E+
Sbjct: 434 AGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRRED 493

Query: 434 VINYASHRFSNNRPV 448
           ++     R   ++P+
Sbjct: 494 LVEEIRRR--TSQPL 506


>gi|315608186|ref|ZP_07883178.1| histidine--tRNA ligase [Prevotella buccae ATCC 33574]
 gi|315250155|gb|EFU30152.1| histidine--tRNA ligase [Prevotella buccae ATCC 33574]
          Length = 454

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 1/126 (0%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     ++ I   +Q     C  I  ++ 
Sbjct: 329 FGMPGLSGVGISFGADRIYDVLNTLNLYPKEAVNSTQVLFINFGEQET-AYCLPILKQVR 387

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G          ++  Q   A+  G P  V+ G   +   +V +K+  TG +  +S  E
Sbjct: 388 DAGIRAEIYPDSAKMKKQMNYANAKGIPFVVLAGENEMQTRQVTLKNMETGEQRQVSPAE 447

Query: 434 VINYAS 439
            I    
Sbjct: 448 AITCIQ 453


>gi|255065193|ref|ZP_05317048.1| histidine--tRNA ligase [Neisseria sicca ATCC 29256]
 gi|255050614|gb|EET46078.1| histidine--tRNA ligase [Neisseria sicca ATCC 29256]
          Length = 431

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 115/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L          ++       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDVVGRWTRAYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWDKLGIRDYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   ++   D+  + +     T      S
Sbjct: 183 AAHRAALVEYLTRHEDKLDED-SKRRLKTNPLRVLDSKNPDLQEICNAAPHLTDYLGEES 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 RNHYSRFKAMLEGLGIQYVENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    +++  V  K       +
Sbjct: 356 --QTLRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGMVTFKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++ +++I+    
Sbjct: 414 QTVAADDLIHTLQQ 427


>gi|257468587|ref|ZP_05632681.1| seryl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317062844|ref|ZP_07927329.1| seryl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|313688520|gb|EFS25355.1| seryl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
          Length = 423

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 66/201 (32%), Gaps = 14/201 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  +G +    +   + +      G  E   P L   ++   +G+   +  +M R  
Sbjct: 162 FVLYRGMGARVERALINFMLDMHTTEHGYTEHITPFLVKREICEGTGQLPKFEDDMYRTT 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D     M    T E  MT+I R  I   + LP  +      FR E     +   G++R  
Sbjct: 222 D----DMFLISTSEITMTNIHRKEILDEKELPKYYTAYSPCFRREAGSYGKDVKGIIRVH 277

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +           +     +      +  RL L    ++  +G +G   +     E
Sbjct: 278 QFNKVEMVKIATQESSYEELEKMVVN-AEEVLQRLELPYRVIQLCTGDLGFSAAKTYDLE 336

Query: 210 FIVLADTGETQVFCSKDFMDF 230
             + +     ++    +  DF
Sbjct: 337 VWLPSQNKYREISSCSNCTDF 357


>gi|256425975|ref|YP_003126628.1| histidyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
 gi|256040883|gb|ACU64427.1| histidyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
          Length = 449

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 132/453 (29%), Gaps = 52/453 (11%)

Query: 31  MIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY--- 86
           MI      G   + P+  +    +   IRE     G   +  PT+++ D    +G+Y   
Sbjct: 1   MIKPSIPKGTRDFGPVVVRKRQYIFQTIRETFELFGFQPLETPTMENLDTL--TGKYGEE 58

Query: 87  -DSYGKEMLRLADRNDKAMIYGPTHEEVMTDI--------------FRSHIKSYRNLPFT 131
            D    ++L   D   +A     + E  +                 +    +    LPF 
Sbjct: 59  GDKLIFKILDNGDILGRAQQAKDSRELGILLCEKALRYDLTIPFARYVVMNQHELALPFK 118

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
            YQ+Q  +R +   +    R REF   DA         ++     ++ +        G +
Sbjct: 119 RYQMQPVWRGDRPAKG---RYREFYQCDADVVGSNSLLNEIELLLIYDTVFTKLGMEGYE 175

Query: 192 SIPM-------------RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                            + +          +   +   G  +    +   D  I      
Sbjct: 176 VRINNRKILGALAEIVGQPDLLTDITISIDKLDKIGMDGVKKELQERGLSDTEITKIANF 235

Query: 239 FDDIISLNSIVEQWTA-----PYAATSDVHNEKLFDSLPENKRVSAR---GIEVGHIFYF 290
            +   S    ++Q        P           +  + PE  + +      +  G  +Y 
Sbjct: 236 LNISGSNEEKLQQLGVLFQNSPTGLKGIEELSYVLHTQPEAFKTTPILDVTLARGLNYYT 295

Query: 291 GTK-YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI-----IWPDSV 344
           G         A   G+ G        +   G   +    I    D             + 
Sbjct: 296 GMIVEVKAPEAVKMGSIGGGGRYDDLTGLFGLPGISGVGISFGVDRIYDVLEELQLFPAT 355

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           A     ++     D        K+  +L   G          ++  Q   A+    P  +
Sbjct: 356 AQQGTQVLFFNL-DAETTGTAFKLVMQLRAKGVSSELFHETSKMDKQMKYANKRNIPYVI 414

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           I+G   V +  V IK+ +TG +E +++ E+ NY
Sbjct: 415 IMGESEVKEGLVSIKNMVTGQQEKIAMTELANY 447


>gi|229103854|ref|ZP_04234533.1| Histidyl-tRNA synthetase 1 [Bacillus cereus Rock3-28]
 gi|228679557|gb|EEL33755.1| Histidyl-tRNA synthetase 1 [Bacillus cereus Rock3-28]
          Length = 428

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 61/429 (14%), Positives = 127/429 (29%), Gaps = 45/429 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 14  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 73

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 74  GKRELALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 128

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F     +   + ++    +      ++  I  +L  + I+ 
Sbjct: 129 VDIVGVESVMAEAELMSMAFELSRTLNLEVTIQYNNRKLLNGILQAINIPTELMSDVILS 188

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPY---AATSD 261
            D  E          V       +      NT    +  ++    E +            
Sbjct: 189 LDKIEKIGIDGVRKDVLGRGITEEMADTICNTVLSCLKLTIADFKEAFNNLLVTDGINEL 248

Query: 262 VHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++   +L  N+         RG+ +     +          +  G+ G+   +    
Sbjct: 249 QQLQQCLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAF 308

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-- 374
            G         +          +           L  I    ++    C +I  +L    
Sbjct: 309 RGDNMNYPTVGISFGLDVIYTALSQKETISSTADLFIIPLGTELQ---CLQIAQQLRSTT 365

Query: 375 -VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +  ++         G +   A    +    P  +I+G + +S   V +++   G    +
Sbjct: 366 SLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSAETVVMRNMKEGSEVKV 419

Query: 430 SLEEVINYA 438
            L  + NY 
Sbjct: 420 PLSSLSNYL 428


>gi|206974667|ref|ZP_03235583.1| histidyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|206747310|gb|EDZ58701.1| histidyl-tRNA synthetase [Bacillus cereus H3081.97]
          Length = 426

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/429 (13%), Positives = 129/429 (30%), Gaps = 45/429 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 12  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 71

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 72  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 126

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 127 VDIVGVESVMAEAELMSMAFELFQTLNLEVTIQYNNRKLLNGILQAINIPTELTSDVILS 186

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPY---AATSD 261
            D  E          V       +      NT    +  ++    E +  P         
Sbjct: 187 LDKIEKIGIDGVRKDVLERGITEEMADTICNTVLSCLKLTIADFKEAFNNPLVADGVNEL 246

Query: 262 VHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++   +L  N+         RG+ +     +          +  G+ G+   +    
Sbjct: 247 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAF 306

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-- 374
            G         +          +           +  I    ++    C +I  +L    
Sbjct: 307 RGDNMHYPTVGISFGLDVIYTALSQKETVSSTADVFIIPLRTEIQ---CLQIAQQLRSTT 363

Query: 375 -VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +  ++         G +   A    +    P  +I+G + +S     +++   G    +
Sbjct: 364 SLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTETAMLRNMKEGSEVKV 417

Query: 430 SLEEVINYA 438
            L  + NY 
Sbjct: 418 PLSSLSNYL 426


>gi|21673441|ref|NP_661506.1| seryl-tRNA synthetase [Chlorobium tepidum TLS]
 gi|30173171|sp|Q8KES6|SYS_CHLTE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|21646543|gb|AAM71848.1| seryl-tRNA synthetase [Chlorobium tepidum TLS]
          Length = 427

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 71/214 (33%), Gaps = 13/214 (6%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
              G   +   G +    +   + +  +   G  E+  P + + +    +G++  +  ++
Sbjct: 163 SGAGFPVYTGKGARLERALINFMLDTHSANHGYTEVFPPFMVNQESLRGTGQWPKFADQV 222

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
                  +  +   PT E  +T++ R  I     LP  +      FR E     +   G 
Sbjct: 223 Y---HMPEDGLYAIPTAEVPVTNLHRGEILDADKLPIAYAAYSACFRREAGSYGKDTRGF 279

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +       PE S  +  ++      I   L +    +   SG I  + +  
Sbjct: 280 LRVHQFNKVEMV-RFTRPEASYEALEEILGHAEAILVALKIPYRVITLCSGDISANAAKC 338

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
              E    A+    +     +F D+     N  F
Sbjct: 339 YDIEVWSPAENKYLEASSVSNFEDYQARRSNIRF 372


>gi|228934611|ref|ZP_04097445.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825004|gb|EEM70802.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 425

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 61/429 (14%), Positives = 129/429 (30%), Gaps = 45/429 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFQTLNLEVTIQYNNRKLLNGILQAINIPTELTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDF-DDIISLNSIVEQWTAPY---AATSD 261
            D  E          V       +      NT      +S+    E +  P         
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLQLSIADFKEAFNNPLVADGVNEL 245

Query: 262 VHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++   +L  N+         RG+ +     +          +  G+ G+   +    
Sbjct: 246 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAF 305

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-- 374
            G         +          +           +  I    ++    C +I  +L    
Sbjct: 306 RGDNMNYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGTELQ---CLQIAQQLRSTT 362

Query: 375 -VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +  ++         G +   A    +    P  +I+G + +    V +++   G    +
Sbjct: 363 SLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEEICTETVMLRNMKEGSEVKV 416

Query: 430 SLEEVINYA 438
            L  + NY 
Sbjct: 417 PLSSLSNYL 425


>gi|313668679|ref|YP_004048963.1| histidyl-tRNA synthetase [Neisseria lactamica ST-640]
 gi|313006141|emb|CBN87602.1| putative histidyl-tRNA synthetase [Neisseria lactamica 020-06]
          Length = 431

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 113/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVNRWTRAYGYRQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWGKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEDKLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLAIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGEGT----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + +S  ++ +    
Sbjct: 414 QTVSAADLTDTLQQ 427


>gi|163781886|ref|ZP_02176886.1| seryl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883106|gb|EDP76610.1| seryl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 424

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 67/213 (31%), Gaps = 12/213 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +   + +     G  E+  P L   ++   +G+   + +++ +        +
Sbjct: 170 WGARLERALINFMLDLHRTKGYEEVLPPHLVRPEVLEGTGQLPKFEEDLYKCE---RDEL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++FR  I     LP         +R E     +   G++R  +F   + 
Sbjct: 227 YLIPTAEVPLTNLFRGEILKEEELPIYLTAHTPCYRREAGSHGKDIRGIIRQHQFNKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
                                  +   LGL    +   +G +G   +     E    +  
Sbjct: 287 VKIVHPDTSYDELEKLAAD-AEEVLKLLGLPYRVVELCTGDLGFSAAKTYDLEVWFPSQG 345

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              ++    +  DF     NT F D    N  V
Sbjct: 346 KYREISSCSNCEDFQARRMNTRFKDERGKNRFV 378


>gi|332522516|ref|ZP_08398768.1| serine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
 gi|332313780|gb|EGJ26765.1| serine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
          Length = 425

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 74/209 (35%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    +   + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKNLGARLERALYNFMLDEHAKEGYQEIIPPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DTNFVLIPTAEVPLTNYYRGEILDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E           +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYDELEKMT-ANAENILQKLNLPYRVITLCTGDMGFSAAKTYDVEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|77414886|ref|ZP_00790994.1| seryl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|77159061|gb|EAO70264.1| seryl-tRNA synthetase [Streptococcus agalactiae 515]
          Length = 425

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 12/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    + + + +E  + G  E+  P + + D    +G+Y  + ++     +  
Sbjct: 165 FYKGLGARLERAIYSFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKED---TFELA 221

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D   +  PT E  +T+ +R  I   + LP  F  +   FR E     R   G++R  +F 
Sbjct: 222 DSPFVLIPTAEVPLTNYYRDEIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFH 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    E  +        +   I  +L L    +   +G +G   +     E  +
Sbjct: 282 KVEMVKFAKPEESYQELEKMT-ANAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWI 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
            A     ++    +  DF        + D
Sbjct: 341 PAQNTYREISSCSNTEDFQARRAQIRYRD 369


>gi|225440069|ref|XP_002277086.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 554

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/412 (13%), Positives = 126/412 (30%), Gaps = 27/412 (6%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDK 102
           P   +  + +    RE     G  E+  P L+S  L+  ++G  +    ++    DR ++
Sbjct: 148 PEDMRLRNWLFNHFREVSRSFGFEEVDFPVLESEALFIRKAG--EEIRDQLYCFEDRGNR 205

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +   P     +  +     KS  +LP  ++ +   +R E   R    R RE    +   
Sbjct: 206 RVALRPELTPSLARLVIQKGKS-VSLPLKWFAVGQCWRYERMTRG---RRREHYQWNMDI 261

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
             +    ++       V++ +             +    +   L    I     G+  V 
Sbjct: 262 IGVPEVMAEAELISSIVTFFKRVGITASDVGFKVSSRKVLQEVLRCYSIPENLFGKVCVI 321

Query: 223 CSKDF---MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
             K     +D       +      ++  +++  +       +       +++ + K++ +
Sbjct: 322 IDKMEKIPIDEITKELKSLGMSEEAIKDLLQVLSIKSLTKLEEILGAAGEAVADLKQLFS 381

Query: 280 RGIEVGHIFYFGTKYSLPMSATFK--------GADGKDHYVQMGSY-----GIGAMRVVA 326
              + G+  +     S+     +           +GK   +  G              V 
Sbjct: 382 LAEKFGYSEWIQFDASVVRGLAYYTGIVFEGFDREGKLRAICGGGRYDRLLSTFGGDDVP 441

Query: 327 AVIESSHDGKGIIWPDSVAPFK----ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
           A      D   I                   + A D   + A   +  RL + G  V   
Sbjct: 442 ACGFGFGDAVIIELLKEKGLLPELSLQVENIVCALDHYLQGAAAAVATRLREKGQSVDLV 501

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              + +   F  A        ++VG+       V +K   +G + ++ L+E+
Sbjct: 502 LESKPLKWVFKRAARTNAQRLILVGNSEWQRGMVSVKILSSGEQYEIKLDEL 553


>gi|288925143|ref|ZP_06419079.1| histidine--tRNA ligase [Prevotella buccae D17]
 gi|288338333|gb|EFC76683.1| histidine--tRNA ligase [Prevotella buccae D17]
          Length = 454

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 1/126 (0%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     ++ I   +Q     C  I  ++ 
Sbjct: 329 FGMPGLSGVGISFGADRIYDVLNTLDLYPKEAVNSTQVLFINFGEQET-AYCLPILKQVR 387

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G          ++  Q   A+  G P  V+ G   +   +V +K+  TG +  +S  E
Sbjct: 388 DAGIRAEIYPDSAKMKKQMNYANAKGIPFVVLAGENEMQTRQVTLKNMETGEQRQVSPAE 447

Query: 434 VINYAS 439
            I    
Sbjct: 448 AITCIQ 453


>gi|90961171|ref|YP_535087.1| seryl-tRNA synthetase [Lactobacillus salivarius UCC118]
 gi|301299680|ref|ZP_07205935.1| serine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|122449395|sp|Q1WVB3|SYS_LACS1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|90820365|gb|ABD99004.1| Seryl-tRNA synthetase [Lactobacillus salivarius UCC118]
 gi|300852720|gb|EFK80349.1| serine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 425

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 90/261 (34%), Gaps = 20/261 (7%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +  LG K    V   + +E  + G  E+  P +  +     +G++  +  ++ ++  
Sbjct: 163 FVFYKGLGAKLERAVYNFMLDEHAKEGYTEVIPPYIVKSKSMYGTGQFPKFKDQVYQV-- 220

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N + M   PT E  +T+ +R  +    +LP  F  +   FR E     R   G++R  +
Sbjct: 221 -NGEDMTLIPTAEVPLTNYYREEVIPTEDLPVYFTALSPSFRSEAGSAGRDTRGLIRMHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   +    +           +   I  +LGL    +   +G +G   +     E 
Sbjct: 280 FNKVEMVKYTKPEDSYNELEKMT-KNAGNIMEKLGLPYHVITLSTGDMGFSAAMTHDLEV 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP--------YAATSDV 262
            + A     ++    +  DF        + D       V               A   + 
Sbjct: 339 WMPAQDTYREISSCSNCEDFQARRARIQYRDENGKLQYVHTLNGSGLAVGRTVAAILENY 398

Query: 263 HNEKLFDSLPENKRVSARGIE 283
            NE    ++PE  R   +G+E
Sbjct: 399 QNEDGSVTIPEALRPYMQGLE 419


>gi|294507878|ref|YP_003571936.1| seryl-tRNA synthetase [Salinibacter ruber M8]
 gi|294344206|emb|CBH24984.1| seryl-tRNA synthetase [Salinibacter ruber M8]
          Length = 428

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 3/117 (2%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +L  G +    +     +     G  EM  P   + +    +G+       M  
Sbjct: 163 GSGFPFYLGKGARLQRALLNFFLDRARERGYTEMQAPLFVNPESAKGTGQLPDKDALMY- 221

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
             +         PT E  +T+  R  I +  +LP  +      +R E       +R 
Sbjct: 222 --EIPRDDFYPIPTAEVPVTNFHRDEILAADDLPRRYCTYSPCWRREAGSYGSDVRG 276


>gi|254685900|ref|ZP_05149759.1| histidyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254742463|ref|ZP_05200148.1| histidyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
          Length = 425

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 62/429 (14%), Positives = 129/429 (30%), Gaps = 45/429 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q     +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRSKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFQTLNLEVTIQYNNRKLLNGILQAINIPTELTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDF-DDIISLNSIVEQWTAPY---AATSD 261
            D  E          V       +      NT      +S+    E +  P         
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLQLSIADFKEAFNNPLVADGVNEL 245

Query: 262 VHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++   +L  N+         RG+ +     +         A+  G+ G+   +    
Sbjct: 246 QQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSIASSIGSGGRYDNIIGAF 305

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-- 374
            G         +          +           +  I    ++    C +I  +L    
Sbjct: 306 RGDDMSYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGTELQ---CLQIAQQLRSTT 362

Query: 375 -VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +  ++         G +   A    +    P  +I+G + +    V +++   G    +
Sbjct: 363 SLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEEICTETVMLRNMKEGSEVKV 416

Query: 430 SLEEVINYA 438
            L  + NY 
Sbjct: 417 PLSSLSNYL 425


>gi|167632613|ref|ZP_02390940.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170685114|ref|ZP_02876339.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|167532911|gb|EDR95547.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170671374|gb|EDT22112.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0465]
          Length = 426

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 62/429 (14%), Positives = 129/429 (30%), Gaps = 45/429 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q     +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 12  DYLPEEQVLRSKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 71

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 72  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 126

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 127 VDIVGVESVMAEAELMSMAFELFQTLNLEVTIQYNNRKLLNGILQAINIPTELTSDVILS 186

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDF-DDIISLNSIVEQWTAPY---AATSD 261
            D  E          V       +      NT      +S+    E +  P         
Sbjct: 187 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLQLSIADFKEAFNNPLVADGVNEL 246

Query: 262 VHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++   +L  N+         RG+ +     +         A+  G+ G+   +    
Sbjct: 247 QQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSIASSIGSGGRYDNIIGAF 306

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK-- 374
            G         +          +           +  I    ++    C +I  +L    
Sbjct: 307 RGDDMSYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGTELQ---CLQIAQQLRSTT 363

Query: 375 -VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +  ++         G +   A    +    P  +I+G + +    V +++   G    +
Sbjct: 364 SLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEEICTETVMLRNMKEGSEVKV 417

Query: 430 SLEEVINYA 438
            L  + NY 
Sbjct: 418 PLSSLSNYL 426


>gi|189462888|ref|ZP_03011673.1| hypothetical protein BACCOP_03588 [Bacteroides coprocola DSM 17136]
 gi|189430504|gb|EDU99488.1| hypothetical protein BACCOP_03588 [Bacteroides coprocola DSM 17136]
          Length = 453

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 1/99 (1%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
               A F   L+ +   +         + A++   G          ++  Q + A+    
Sbjct: 356 YPEDASFGTQLLFVNFGEAEA-AYVLPVLAKVRAAGIRAEIYPDSAKMKKQMSYANAKAI 414

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           P   IVG   +++ KV +K+  TG +  ++ EE+I    
Sbjct: 415 PFVAIVGENEMNEGKVMLKNMATGEQNLLAPEELIAAIR 453


>gi|171185112|ref|YP_001794031.1| histidyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
 gi|229558737|sp|B1YCS2|SYH_THENV RecName: Full=Histidyl-tRNA synthetase
 gi|170934324|gb|ACB39585.1| histidyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
          Length = 417

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/426 (12%), Positives = 121/426 (28%), Gaps = 37/426 (8%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSY 89
            + +  +G+  WLP    AL  +   + +     G   +  P ++  + L  ++G+    
Sbjct: 7   HLRRPPRGMRDWLPPQLYALIEMEERLSKVAESFGYRRVETPVVEHFEVLAKKAGQ--EV 64

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
             E+    D+  + +         +  +   ++   R + + ++    ++     P+ G 
Sbjct: 65  VNEIYYFKDKAGRDVGLRFDMTVPVARVISYNLDLPRPVRWYYFTKVFRY---DEPQHGR 121

Query: 150 MRSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL-- 206
            R  EF           +P            +      R  +  I  R     +   L  
Sbjct: 122 YR--EFHQFGIELVGSASPRADAEVIQVFIEALEAAGARDYVVKINDRRAVDKLLESLGV 179

Query: 207 -SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
             H  ++     +      +  +D          D    +    E+ T   A  + +  +
Sbjct: 180 LQHRDVIYRALDKKYKLPREQVVDIMTNG-GVPIDKAERIYDASEEMTLEEAVDAVLRLD 238

Query: 266 K------------LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                        L  ++P ++      I  G  +Y G  +       ++ A G      
Sbjct: 239 AGLGSFYQKLVGYLATAVPVDRLRFDMSIVRGLDYYTGVVF-EAYVGKYRLAVGGGGRYD 297

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
                   +++ A       +              +    I   D         +  +L 
Sbjct: 298 DLLELYSGVKMPALGFAIGVERLMEAVGLERVEKPLDYY-IYIFDDGAYPHAVALAKKLR 356

Query: 374 KVGCDVFWDDMGEQIGSQ-FAVAD----LLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             G  V  +     +G +    A      +G    +I+G + +    V+I+        +
Sbjct: 357 AAGHSVAIE-----LGEKNLKDAFEYILKVGTKYLIIMGRRELERGVVKIRDLQRREEFE 411

Query: 429 MSLEEV 434
             L E 
Sbjct: 412 KPLAEF 417


>gi|261392797|emb|CAX50373.1| histidyl-tRNA synthetase (histidine--tRNA ligase; HisRS) [Neisseria
           meningitidis 8013]
          Length = 431

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 114/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVGRWTRAYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIITMSADLWEKLSIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEDKLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGERA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++ E++ +    
Sbjct: 414 QTVAAEDLTHTLQQ 427


>gi|326802688|ref|YP_004320506.1| serine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651068|gb|AEA01251.1| serine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 432

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 10/216 (4%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
                  +  LG +    +   + ++  + G +EM  P L +      +G++  + +++ 
Sbjct: 159 SGSRFVYYKGLGARLERALYNFMLDQHQKEGYMEMITPFLVNDQAMYGTGQFPKFTEDVY 218

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
           ++     + +   PT E  +T+ F   I    +LP     +   FR E     R   G++
Sbjct: 219 QIT-NEGQDLTLIPTAEVPLTNYFAKEILKEEDLPIRVTALSPCFRSEAGSAGRDTRGLI 277

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   +        +        M  +   I   LGL    +   +G +G   +   
Sbjct: 278 RMHQFQKVEMVKVATPDQSFDEL-EAMTKNAENILDLLGLPYRRIILCTGDMGFSAAKTY 336

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
             E  + A     ++    + +DF        + DI
Sbjct: 337 DIEVWMPAQNTYREISSCSNCVDFQARRAQVRYRDI 372


>gi|229191426|ref|ZP_04318410.1| Histidyl-tRNA synthetase 1 [Bacillus cereus ATCC 10876]
 gi|228592001|gb|EEK49836.1| Histidyl-tRNA synthetase 1 [Bacillus cereus ATCC 10876]
          Length = 426

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/424 (15%), Positives = 134/424 (31%), Gaps = 35/424 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   ++   + G  D   KE+  L D+
Sbjct: 12  DYLPEEQVLRNKIKRACEDTFERYGCKSLETPTLNMYEVMSYKYGGGDEILKEIYTLEDQ 71

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +   +      LPF  Y+I   FRD    +    R REF+  D
Sbjct: 72  GKRELALRYDLTIPFAKVVAMNQN--IRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 126

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 127 VDIVGVESVMAEAELMSMAFELFRTLNLEITIQYNNRKLLNGILQAINIPTELTSDVILS 186

Query: 214 ADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            D  E        KD ++  I  E  D      L+ +              +N+ + D +
Sbjct: 187 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADF---KETFNNQLVADGV 243

Query: 272 PENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            E +++       GI    IF       L M                 S G G  R    
Sbjct: 244 NELQQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGG-RYDNI 302

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLSKV 375
           +     D              +    +   + +                C +I  +L   
Sbjct: 303 IGAFRGDNMNYPTVGISFGLDVIYTALSQKETISSTVDLFIIPLGTELQCLQIAQQLRST 362

Query: 376 -GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V  +  G ++      A+    P  +I+G + +S   V +++   G   +++L  +
Sbjct: 363 TSLKVELELAGRKLKRALNYANKENIPYVLIIGEEELSTETVMLRNMKEGSEVNVTLSSL 422

Query: 435 INYA 438
            +Y 
Sbjct: 423 SSYL 426


>gi|325142103|gb|EGC64529.1| histidyl-tRNA synthetase [Neisseria meningitidis 961-5945]
 gi|325198054|gb|ADY93510.1| histidyl-tRNA synthetase [Neisseria meningitidis G2136]
 gi|325203922|gb|ADY99375.1| histidyl-tRNA synthetase [Neisseria meningitidis M01-240355]
          Length = 431

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 114/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVGRWTRAYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEDKLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGERA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++ E++ +    
Sbjct: 414 QTVAAEDLTHTLQQ 427


>gi|198438257|ref|XP_002130910.1| PREDICTED: similar to glycyl-tRNA synthetase [Ciona intestinalis]
          Length = 728

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/286 (10%), Positives = 71/286 (24%), Gaps = 21/286 (7%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           + +              ++         E +  AD     + C        + +E    +
Sbjct: 424 FRQHMQNEMAHYACDCWDAECKTSYGWVECVGCADRSCYDLKCHSQAAKVNLSAERPLPE 483

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
            +      +               +K+   L          +E          Y+     
Sbjct: 484 PVQRDVVSLSCNKQAVGKAFKKDAKKVQAHLEGLSEEEIVNLETEMTANSVYVYTHSDGG 543

Query: 301 TFKGADGK-------------DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
            F    G              +    +     G  R++ + +E +   +      +    
Sbjct: 544 KFNVLPGMVAVKRTKKTFQVEEFMPSVIEPSFGFGRLLYSTLEHNFKIRAADEQRTFFSL 603

Query: 348 KISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
              +   K      ++          +   L K+G     D     IG ++A  D +  P
Sbjct: 604 PAVIAPYKCSLLPLSNKPDFNPFITSLSLALKKLGISHKVDTSSGSIGKRYARTDEIAVP 663

Query: 402 LQVIVGSKFV--SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
             + V    V        ++ R + ++   ++EE+          N
Sbjct: 664 FGITVDFDTVKIEPHTATLRERDSLVQIRATVEEIPQIVYDLVQEN 709



 Score = 42.0 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTG-AIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P+G    +N+ +  ++        +E+    L    +   SG  + +   M++
Sbjct: 140 SGLYDFGPVGCMLKNNIISEWKQHFILHDQMLEIECTMLTPEPVLRASGHIERFADLMVK 199

Query: 96  LADRNDKAMIYGPTHEEVM 114
             ++           E  +
Sbjct: 200 D-EKTGACFRADHLLEGHI 217


>gi|303288834|ref|XP_003063705.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454773|gb|EEH52078.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 503

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 62/436 (14%), Positives = 122/436 (27%), Gaps = 39/436 (8%)

Query: 28  RTGMIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGR 85
           R  MI  Q  KG   + P   +  + +    R+     G  E   P L++ +L+  ++G 
Sbjct: 77  RKKMIDLQPPKGTRDFAPEEMRVRNWLFGHFRDVARTFGFEEWDAPVLETEELYVRKAG- 135

Query: 86  YDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP 145
            +    ++    D+ ++ +   P        +     KS   LP  ++ I   +R E   
Sbjct: 136 -EEITTQLYNFEDKGNRRVALRPELTPSFARLILQQGKS-LALPAKWFAIGQCWRYERMT 193

Query: 146 RFGVMRSRE------------------------FLMKDAYSFDLTPEGSKHSYNKMFVSY 181
           R       +                        F      S D+  + S     +  ++ 
Sbjct: 194 RGRRREHYQWNMDIVGVDGVEAEAELLAAIVEFFTRLGITSADVGLKVSSRKVLQAVLTR 253

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             +          +  +   +  +   E +      E  +      M+     +      
Sbjct: 254 YDVPEASFAPVCVVVDKIEKLPREKIVEELAGLGVTEDAIDGILAAMEMKTIDDLAALLG 313

Query: 242 IISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSAT 301
             +           +A      +  +FD+          G+        G   ++     
Sbjct: 314 ADADAVKDLTTLFSHAEAYGYADWLVFDASVVRGLSYYTGVVFEGFDRAGELRAICGGGR 373

Query: 302 FKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVC 361
           +    G          G G    V   + +                      +       
Sbjct: 374 YDKLLGALGGEDRSMVGFGFGDAVIMELVN-----DRGLLPESLKTGCVDDLVYPMTAAL 428

Query: 362 RDACEKIYARLSKVGCDVFW---DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           R A   I ARL K G  V     D  G++    F  A+  G    V++G K  ++ KV +
Sbjct: 429 RPAAMAIAARLRKAGRRVDLVIED--GKKPKWVFKHAERSGAARVVLLGEKEWAEGKVRV 486

Query: 419 KHRLTGIREDMSLEEV 434
           K   +    D+  E +
Sbjct: 487 KDLASREETDVDPESL 502


>gi|159898767|ref|YP_001545014.1| histidyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159891806|gb|ABX04886.1| histidyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 434

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 32/73 (43%)

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++   L   G  V       +I +QF  AD  G    +++G   ++   V++K   +G +
Sbjct: 359 RLAGELRVAGLSVLTAYSPVKIANQFKEADRKGANFALVLGPDDLAAGVVQLKDLRSGQQ 418

Query: 427 EDMSLEEVINYAS 439
           + ++ + ++    
Sbjct: 419 QAVARDAIVAAIK 431


>gi|296192945|ref|XP_002744292.1| PREDICTED: probable histidyl-tRNA synthetase, mitochondrial isoform
           2 [Callithrix jacchus]
          Length = 481

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 69/460 (15%), Positives = 128/460 (27%), Gaps = 55/460 (11%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
           +  HS+G     P      + +  ++     R GA  M  P  +  ++  E   Y     
Sbjct: 31  VRCHSQGTRDLSPQQMVVREKILDLVVSCFKRHGAKGMDTPAFELKEMLTEK--YGEDSG 88

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
            M  L D+  + +                     +      Y +   +R E  P     R
Sbjct: 89  LMYDLKDQGGELLSLRYDLTVPFARYLAM----NKVKKMKRYHVGKVWRRE-SPTIVQGR 143

Query: 152 SREFLMKDAYSFDL-TPEGSKHSYNKMFVSYLRIFH-------------RLGLKSIPMRA 197
            REF   D        P        K+    L                   G+ ++    
Sbjct: 144 YREFCQCDFDIAGQFDPMIPDAECLKIMCEILNGLQLGDFLIKVNDRRIVDGMFAVCGVP 203

Query: 198 ESG-------------PIGGDLSHEFIVL-------ADTGETQVFCS-------KDFMDF 230
           ES                  D+ HE +         AD     V C        + F D 
Sbjct: 204 ESKFRTICSSIDKLDKMAWKDVRHEMVAKKGLAPEVADRIGDYVRCHGGESLVKQMFQDP 263

Query: 231 PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYF 290
            +       + +  L  + E  T    A     +  L   L     V    + +      
Sbjct: 264 RLSQNKQALEGLGDLKLLFEYLTLFGIAKKISFDLSLARGLDYYTGVIYEAVLLHTPTQA 323

Query: 291 GTKY----SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           G +     S+     + G  G     +        + +    I +  + +   + + V  
Sbjct: 324 GEEPLSVGSVAAGGRYDGLVG-MFDPKGHKVPCVGLSIGVERIFNIVEQRMKTFGEKVRT 382

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVI 405
            +  ++    H     +   K+ A L   G           ++ +Q    +  G PL VI
Sbjct: 383 TETQVLVATPHKNFLHER-LKLIAELWDAGIKAEMLYKNNPKLLTQLHYCESTGIPLVVI 441

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           VG + + +  V+I+   +     +  E ++     R S +
Sbjct: 442 VGEQELKEGVVKIRSVASREEVAIKRENLVAEIQKRLSES 481


>gi|237713808|ref|ZP_04544289.1| histidyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262409285|ref|ZP_06085828.1| histidyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|294644704|ref|ZP_06722453.1| histidine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294805935|ref|ZP_06764802.1| histidine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|229446255|gb|EEO52046.1| histidyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262352737|gb|EEZ01834.1| histidyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|292639967|gb|EFF58236.1| histidine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294446817|gb|EFG15417.1| histidine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
          Length = 454

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 5/129 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ I   ++        I A++ 
Sbjct: 329 FGMAGVSGVGISFGADRIFDVLNQLELYPKEAVNGTELLFINFGEKEA-AYSMGILAKVR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
                     D    ++  Q + A+    P   IVG   +++ KV +K+  TG +  +S 
Sbjct: 388 AANIRAEIFPD--AAKMKKQMSYANAKNIPFVAIVGENEMNEGKVMLKNMETGEQNLVSA 445

Query: 432 EEVINYASH 440
           +E+I     
Sbjct: 446 DELIAIVKK 454


>gi|161527744|ref|YP_001581570.1| histidyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
 gi|160339045|gb|ABX12132.1| histidyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
          Length = 427

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 121/429 (28%), Gaps = 50/429 (11%)

Query: 43  LPLGQKALDNVNA----IIREEQNR----TGAIEMSVPTLQSADLWV-ESGRYDSYGKEM 93
           LP G K  +         +R    +     G   M    L+S      +SG   +   E+
Sbjct: 3   LPRGMKDFEANENSNIEHVRNHFKKLSNLYGFSFMEPSVLESLSTLETKSG--PAIRDEI 60

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKS--------------YRNLPFTFYQIQLKF 139
               D+ D+ +         +T    +                  Y       Y+   ++
Sbjct: 61  YYFKDKGDREVALRFDFTMGLTRYATAQKSMKLPAKISAFGGVFRYDEPQKGRYRYFHQW 120

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
             E+  +  +    E +   +  FD                     +++   +   +   
Sbjct: 121 DVEVYGKKTLESEAEIIELTSRLFDSLLLKDIVIDINHRNLVESYINKIFDITDSDKVTD 180

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                D     I      E     +K   D     +  +F  +    S VE+        
Sbjct: 181 ILRAIDK----IAKKSKDEILTEFTKKGYDTAKLEKILEFSQVKGTISEVEK--IFDTTQ 234

Query: 260 SDVHNE--KLFDSL-------PENKRVSARGIEV--GHIFYFGTKYSLPMSATFKGADGK 308
            +  +E  +LFDSL               RG++   G +F    K S   +    G    
Sbjct: 235 LESWDELKQLFDSLENRGVSNVRINFGIVRGLDYYSGMVFEVFDKNSKLGALA-GGGRYD 293

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
                 G   IGA  V   V       +       +   +++++ I    +  +     I
Sbjct: 294 TLTKAFGRDDIGATGVAGGVERIILTMQEQKIIPEILQNRVAVVYIN---EEMQKVAHSI 350

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGF-PLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            + L         D  G  +  Q    D  G     +IVG + + +  V +     G   
Sbjct: 351 TSLLRLNNIPADIDLAGRNLKKQ---MDNAGTARYSIIVGPQELENGNVVLHDMKDGKEG 407

Query: 428 DMSLEEVIN 436
            +SLE++  
Sbjct: 408 TISLEKLTE 416


>gi|213024164|ref|ZP_03338611.1| prolyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 244

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/113 (41%), Positives = 71/113 (62%), Gaps = 3/113 (2%)

Query: 258 ATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
             +D+ N    D  P+ +   +  RGIEVGHIF  GTKYS  + A+ +G DG++  + MG
Sbjct: 132 VVADIRNVVAGDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMG 191

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQ-VCRDACEK 367
            YGIG  RVVAA IE + D +GI+WPD++APF+++++ +  H     ++  EK
Sbjct: 192 CYGIGVTRVVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEK 244


>gi|254416007|ref|ZP_05029763.1| histidyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196177182|gb|EDX72190.1| histidyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 523

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 36/80 (45%)

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
               +  +L ++G  V  D  G+ + S F  A+  G P  ++VGS+    S V +K   +
Sbjct: 438 YAIGVAQQLRQIGLAVAMDLRGKSVSSNFQYANKQGIPYTILVGSEERQASNVVLKQMDS 497

Query: 424 GIREDMSLEEVINYASHRFS 443
           G ++ +++ +   +      
Sbjct: 498 GEQQQLTVSDAAKHIHDGLK 517


>gi|302338418|ref|YP_003803624.1| histidyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301635603|gb|ADK81030.1| histidyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 435

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 64/430 (14%), Positives = 128/430 (29%), Gaps = 42/430 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   +LP        +   + +     G + +  P L+  ++ +  G  ++  K++    
Sbjct: 10  GFRDFLPDQASRRIAIMHTLEQVFLGYGFVPIDTPVLEYREVLLGKGGGET-DKQVYAFT 68

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D+  + +               SH  +  +LPF  Y I   +R E   +    R REF+ 
Sbjct: 69  DQGGREVAMRFDLTVPFARFMASH-INELSLPFKRYHIDKVWRGENTQKG---RYREFVQ 124

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            D     +    +      M  S         +               L + F+   +  
Sbjct: 125 CDFDIVGIDALSADLEILLMMRSAFTALGIDNVSFKVN-------HRGLFNRFLDTIEVA 177

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISL--NSIVEQWTAPYAAT------SDVHNEKLFD 269
                  +         E    + + S   +   E+      A        +   E    
Sbjct: 178 SHSAAILRIVDKLAKIGEKEVREQLASEIGSQTAEKVLDYIQAKGSFLEAVEKLEELAGG 237

Query: 270 SLPENKRV--SARGIEVGHIFY-FGTKYSLPMSATF----KGADGKDHYVQMGSYGIGAM 322
           S  E+ R+    R +E   +   F    S+     +          +   Q+GS   G  
Sbjct: 238 SCEESNRLREIYRALEEASVADSFILDPSITRGLDYYTGIVYETFLNDLPQIGSVCSGGR 297

Query: 323 RVVAAVIESSHDGKG--------------IIWPDSVAPFKISLINIKAHDQVCRDACEKI 368
               A + +     G                   +        + I   D+        +
Sbjct: 298 YNNLASLYTKQQLPGVGSSIGLDRLVAALEELGKAGGSTSAPAVAIFNIDESLSGYYHML 357

Query: 369 YARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-RE 427
             ++ K G         +++G QFA A+  G  + +I G    +  KV +K+  T   R 
Sbjct: 358 AGKVRKAGLSCEVQLQSQKLGKQFAWAEKRGIRMALICGGDEKNAGKVSVKNLATRESRN 417

Query: 428 DMSLEEVINY 437
            + ++E I++
Sbjct: 418 MIDIKEAIDW 427


>gi|329960090|ref|ZP_08298554.1| histidine--tRNA ligase [Bacteroides fluxus YIT 12057]
 gi|328533042|gb|EGF59815.1| histidine--tRNA ligase [Bacteroides fluxus YIT 12057]
          Length = 453

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 48/128 (37%), Gaps = 5/128 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ I   ++        + A++ 
Sbjct: 329 FGMSGVSGVGISFGADRIFDVLNQLDLYPKEAVNGTQLLFINFGEKEA-AFSLDVLAKVR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G       D    ++  Q   A+  G P   +VG   +++ KV +K+  TG ++ +S 
Sbjct: 388 AAGIRAEIFPDAS--KMKKQMGYANSKGIPFVALVGENEMNEGKVTLKNMETGEQKLVSP 445

Query: 432 EEVINYAS 439
           +E+I+  +
Sbjct: 446 QELISELN 453


>gi|332287036|ref|YP_004421937.1| histidyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|313847633|emb|CBY16621.1| putative histidyl-tRNA synthetase [Chlamydophila psittaci RD1]
 gi|325506741|gb|ADZ18379.1| histidyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|328914268|gb|AEB55101.1| histidyl-tRNA synthetase [Chlamydophila psittaci 6BC]
          Length = 430

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/407 (13%), Positives = 120/407 (29%), Gaps = 14/407 (3%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLADRNDKAMI 105
                 V  +I +  +  G  E+  P  + +++++  G + D   KEM    D+  +++ 
Sbjct: 26  TSLWHRVEDVIHDVCSLYGFSEIRTPVFEKSEVFLHVGEQSDIVKKEMYTFLDKKGRSLT 85

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P     +   F  +  + R+    FY I   FR E +      +  +F ++       
Sbjct: 86  LRPEGTAPIVRSFIDNPMNQRD-DNKFYYILPMFRYERQQSGRYRQHHQFGVEALGVRHP 144

Query: 166 TPEG------SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
             +                       + LG ++   R +         H   + + + E 
Sbjct: 145 LRDAEILALLWHFYSAVGLQHMQVQLNFLGGEATRKRYDKILREYFHDHLSSLSSLSKER 204

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                   +D   P +         +   +      Y          L  S   N R+  
Sbjct: 205 FNTNLLRILDSKEPEDQEIIKSAPPILDYISDDDHKYFDEILSALRDLNISYDINPRL-V 263

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG++      F    +     ++    G  +   + S G  +       I      + ++
Sbjct: 264 RGLDYYTDVVF-EAVTTYGGHSYALGGGGRYDGLIASSGGLSTPACGFGIGLERVIQTLL 322

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG--SQFAVADL 397
              +  P     + +   +      C      L  +G     D   +++    + A A+ 
Sbjct: 323 AQGNFTPLSSHKLRLIPVEPQADSFCFVWAQHLRSLGIPTEVDWTHKKLKTALKIADAE- 381

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
                   VG + +   ++ +K+         S +EV     +   N
Sbjct: 382 -KATFVCPVGERELVSEQLTVKNMSLHKEFSGSKQEVEQRLLYEIQN 427


>gi|116072764|ref|ZP_01470030.1| seryl-tRNA synthetase [Synechococcus sp. BL107]
 gi|116064651|gb|EAU70411.1| seryl-tRNA synthetase [Synechococcus sp. BL107]
          Length = 425

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 73/208 (35%), Gaps = 10/208 (4%)

Query: 9   PILQENPRDAEIASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           P ++E   +    + +L L      +        + +  G +    +   + +     G 
Sbjct: 134 PRIEEGLEEHWQIAQRLNLFDTERSVRIAQSRFVTLIGQGARLERALINFMLDLHTSKGY 193

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P L +      SG+   + +E  R     +  +   PT E  +T + R  I    
Sbjct: 194 REVMPPVLVNTASLTGSGQLPKFAEESFRC---AEDDLWLTPTAEVPVTSLHRDEIIPAD 250

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP  +      FR E     R   G++R  +F   + Y F   P+ S+ ++ ++     
Sbjct: 251 QLPLRYSAYSPCFRREAGSYGRDTRGLIRLHQFNKVELYWFVH-PDQSEEAHQQITADAE 309

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            +   L L    +   +G +G      +
Sbjct: 310 AVLQALDLPYRVLDLCTGDLGFSAQRTY 337


>gi|332705412|ref|ZP_08425490.1| seryl-tRNA synthetase [Lyngbya majuscula 3L]
 gi|332355772|gb|EGJ35234.1| seryl-tRNA synthetase [Lyngbya majuscula 3L]
          Length = 427

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 70/211 (33%), Gaps = 12/211 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + ++Q   G  E+  P L +++    +G+   + ++  + +D     + 
Sbjct: 176 GAALERALINFMLDQQIAAGYTEVMPPVLINSESLTATGQLPKFAEDSFKCSD---DDLW 232

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  + +++R  I     LP         FR E     R   G++R  +F   +  
Sbjct: 233 LAPTAEVPLVNLYRDEILEASQLPINLCAFTPCFRREAGSYGRDTRGLIRLHQFNKVELV 292

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL----SHEFIVLADTG 217
                   S+    K+  +   I   L L    +   +G IG         E  + +   
Sbjct: 293 KIVEPSTSSQEH-QKLLKNAEAILETLKLPYRTVELCTGDIGFSAATTYDLEVWLPSQRT 351

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSI 248
             ++    +  DF        F +     + 
Sbjct: 352 YREISSCSNCFDFQARRGRIRFKESGKKGTH 382


>gi|198276597|ref|ZP_03209128.1| hypothetical protein BACPLE_02793 [Bacteroides plebeius DSM 17135]
 gi|198270122|gb|EDY94392.1| hypothetical protein BACPLE_02793 [Bacteroides plebeius DSM 17135]
          Length = 424

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 77/223 (34%), Gaps = 15/223 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  L      +     G   +   G +    +     +E    
Sbjct: 133 METELPKDALPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGARLQRALINFFLDEARAA 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PT+ +A     +G+      +M          +   PT E  +T+I+R  I  
Sbjct: 193 GYEEIMPPTVVNAASGYGTGQLPDKEGQMYHCNL---DDLYLIPTAEVPVTNIYRDVILD 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M   
Sbjct: 250 EKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRIDK-PEHSKQSHQEMLDH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQV 221
              +  +L L    +R   G +        +F V ++  +  +
Sbjct: 309 VEGLLKKLELPYRILRLCGGDMSFTAALCFDFEVYSEAQKRWL 351


>gi|258545520|ref|ZP_05705754.1| histidine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
 gi|258519220|gb|EEV88079.1| histidine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
          Length = 423

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 62/407 (15%), Positives = 114/407 (28%), Gaps = 20/407 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
           L  ++ +I     R     + +P L+   L+  +     D   KEM    DRND+++   
Sbjct: 23  LQQLHDLIHAVLARYAYRPLQLPLLEQTGLFKRAVGEETDVVSKEMYTFCDRNDESITLR 82

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +      H K     P   Y     FR E   +    RSR+F      +F +  
Sbjct: 83  PEATAGVVRAMIQHGK--LQQPQRVYAEGPMFRYERPQKG---RSRQFSQVSVEAFGMAG 137

Query: 168 EGSKHSYNKMF----------VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                    +                  + +GL       +   +    +H   +  D+ 
Sbjct: 138 AALDAELIAICADLFRRLGVLDLLTLELNTIGLAEERHAFQQALVAYLQNHLDALDDDSR 197

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
                     +D          D   +L+  +   +  + A      +    +   N R+
Sbjct: 198 RRLTINPLRILDSKNAGVQAVLDGAPALDDYLGAESRAHFARLTALLDAQGIAWRRNPRL 257

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                   H  +  T  +L    T     G  +   +   G                   
Sbjct: 258 VRGLDYYCHTVFEWTTDALGAQGTVT--AGGRYDGLVEQLGGKPTPAAGFAFGIERILLL 315

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
               D+      ++  I   D         +  RL      V      + + +Q   AD 
Sbjct: 316 AQTRDTFRDTPPAVYAIATDDAHFASL-LPLVQRLRDADIAVLVQTQVQALKNQLRKADQ 374

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            G    +I+G    ++    +K+   G +E + L E   Y   R   
Sbjct: 375 EGAHYALIIGDDEAANQSASLKNLRDGNQERLPLAETPAYLQERLKE 421


>gi|301626886|ref|XP_002942618.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Xenopus
           (Silurana) tropicalis]
          Length = 104

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 364 ACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              ++   +   G  V  D D G  +  +   A +  +   ++VG K   +S V ++ R 
Sbjct: 14  KGNQVQRMIHDAGFMVDLDTDHGTTLNKKIRKAQVAQYNFILVVGDKEKQNSTVNVRTRD 73

Query: 423 TGIREDMSLEEVINYASHRFSNN 445
           +    +  L+ ++   +      
Sbjct: 74  SKQHGERELKALLVRLTELRDTR 96


>gi|313896743|ref|ZP_07830291.1| serine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974660|gb|EFR40127.1| serine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 423

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +        + +    + G  EM  P + +    V +G+   + ++M +L   
Sbjct: 164 FYKGLGARLERACINFMMDLHAEKHGYTEMLAPYIVNESSMVGTGQLPKFAEDMFKLE-- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E   T+  R  I     LP  +      FR E     R   G++R  +F
Sbjct: 222 -GLDYYLVPTAEVPTTNYHRDEILDAAQLPEYYTSYTACFRAEAGSAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
             K      +TPE S      M  +   +   L L    ++  +G +    +     E  
Sbjct: 281 N-KVELIKFVTPETSWDELESMVEAAEDVLRTLELPYRVIQLCTGDMSFTSAKTYDLEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           + A     ++    +  D+     N  +
Sbjct: 340 MPAQNKYREISSCSNCTDYQARRANIKY 367


>gi|297583175|ref|YP_003698955.1| histidyl-tRNA synthetase [Bacillus selenitireducens MLS10]
 gi|297141632|gb|ADH98389.1| histidyl-tRNA synthetase [Bacillus selenitireducens MLS10]
          Length = 433

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/410 (13%), Positives = 116/410 (28%), Gaps = 47/410 (11%)

Query: 57  IREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
           + +   R G   +  P L  A L   + G      KEM RL D+ ++ +           
Sbjct: 34  LEDVFIRYGCEPLETPILNQASLMTDKYGGGAEIVKEMYRLTDQGERDLALRYDLTMPFA 93

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSY 174
            +   +    +           +            R REF   D     ++ + ++    
Sbjct: 94  RVCVMNPTLRKPFKRYEIGKVFR-----DGPIKAGRYREFTQCDVDVLGVSSQLAEAELM 148

Query: 175 NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                ++ R+   + ++    +  +G +      E ++ +      V            +
Sbjct: 149 IMALDAFERLGMAVTIQYNNRKFLTGLLDVFGVPESLIPS-----AVLTLDKLEKKGAAA 203

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA--------------- 279
              +         + E+  A   A      E++      +++V                 
Sbjct: 204 VLDELLVKGVTEDVTERIGAFLTAGDAADIERIRVYGNGSQQVEEGAAELQELTSFLGAT 263

Query: 280 -------------RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                        RG+E+     +    + P + +   A G  +   +G          +
Sbjct: 264 GTLDQCVFNPFLARGLEIYTGTVYEVFSAEPGALSSSIASGGRYDQAVGGLSGSDEGYPS 323

Query: 327 AVIESSHDGKGI----IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
             I    D           + +   K+  + I   +     A   +   L   G  V  D
Sbjct: 324 VGISFGLDVITTVLESRIDEEIQEEKVDCLIIPVGEP---QAALVLAQALRAQGTSVELD 380

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
             G++ G     A+  G    +++GS  V      +K   TG  E +S  
Sbjct: 381 MSGKKPGKALERANREGVRDVILIGSDEVETGIYTVKRMKTGEEEAVSFS 430


>gi|328881157|emb|CCA54396.1| Histidyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 420

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/397 (12%), Positives = 108/397 (27%), Gaps = 22/397 (5%)

Query: 61  QNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
              +G   +  P  +  +L+        D   KEM     +    +   P     +    
Sbjct: 32  LRTSGYGYVETPGFEDVNLFARGVGESTDIVSKEMYAFETKGGDKLALRPEGTASVLRAA 91

Query: 119 RSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDLTPEGSKHSYNK 176
                  + NLP   +     +R E   +    R R F    A       P         
Sbjct: 92  LEASLHKQGNLPVKLWYSGSYYRYERPQKG---RYRHFSQVGAEAIGAEDPALDAELIIL 148

Query: 177 MFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
              +Y  +  R     +    +    P+  +    F+   D  +      +      +  
Sbjct: 149 ADQAYRSLGLRNFRILLNSLGDKECRPVYREALQGFLRGLDLDDDTRRRIEINPLRVLDD 208

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFG 291
           +       +    ++  +              L  S     E+     RG++      F 
Sbjct: 209 KREAVQKQLVGAPLLRDYLCDACKAYHEEVRALITSAGVVFEDDAKLVRGLDYYTRTTFE 268

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
             +    S +  G  G+   +     G     V  A+               +     + 
Sbjct: 269 FVHDGLGSQSAVGGGGRYDGLSEMIGGPALPSVGWALGVDRTVLALEAEGIELDIPAATS 328

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ-----FAVADLLGFPLQVIV 406
           +         R     +   L K G    +       G++        A+  G    ++ 
Sbjct: 329 VFAVPLGDEARRVLFGVVTELRKAGVATDF-----SFGAKGLKGHMKNANRSGARYAIVA 383

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G + +++  V++K   +G ++ ++L+ ++     R +
Sbjct: 384 GERDLAEGVVQLKDMESGEQQAVALDGLVEAVRTRLA 420


>gi|30263285|ref|NP_845662.1| histidyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47528660|ref|YP_020009.1| histidyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186135|ref|YP_029387.1| histidyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|254723303|ref|ZP_05185091.1| histidyl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|254738370|ref|ZP_05196073.1| histidyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254752686|ref|ZP_05204722.1| histidyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254761201|ref|ZP_05213225.1| histidyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|39932345|sp|Q81N41|SYH1_BACAN RecName: Full=Histidyl-tRNA synthetase 1; AltName:
           Full=Histidine--tRNA ligase 1; Short=HisRS 1
 gi|30257919|gb|AAP27148.1| histidine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47503808|gb|AAT32484.1| histidyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180062|gb|AAT55438.1| histidyl-tRNA synthetase [Bacillus anthracis str. Sterne]
          Length = 425

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 69/433 (15%), Positives = 127/433 (29%), Gaps = 53/433 (12%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q     +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRSKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFQTLNLEVTIQYNNRKLLNGILQAINIPTELTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDF-DDIISLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT      +S+    E +  P  A      
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLQLSIADFKEAFNNPLVADGVNEL 245

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           ++L   L       A GI    IF       L M                 S G G  R 
Sbjct: 246 QQLQQYL------IALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGG-RY 298

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARL 372
              +     D              +    +   + +   A            C +I  +L
Sbjct: 299 DNIIGAFRGDDMSYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGTELQCLQIAQQL 358

Query: 373 SK---VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                +  ++         G +   A    +    P  +I+G + +    V +++   G 
Sbjct: 359 RSTTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEEICTETVMLRNMKEGS 412

Query: 426 REDMSLEEVINYA 438
              + L  + NY 
Sbjct: 413 EVKVPLSSLSNYL 425


>gi|65320616|ref|ZP_00393575.1| COG0124: Histidyl-tRNA synthetase [Bacillus anthracis str. A2012]
 gi|165868911|ref|ZP_02213571.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167637093|ref|ZP_02395373.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170705013|ref|ZP_02895478.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177650107|ref|ZP_02933108.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190564946|ref|ZP_03017867.1| histidyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227813844|ref|YP_002813853.1| histidyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|229604864|ref|YP_002867545.1| histidine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|164715637|gb|EDR21154.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167514600|gb|EDR89966.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170129868|gb|EDS98730.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|172084059|gb|EDT69118.1| histidyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190564263|gb|EDV18227.1| histidyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227005590|gb|ACP15333.1| histidine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|229269272|gb|ACQ50909.1| histidine--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 426

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 69/433 (15%), Positives = 127/433 (29%), Gaps = 53/433 (12%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q     +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 12  DYLPEEQVLRSKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 71

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 72  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 126

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 127 VDIVGVESVMAEAELMSMAFELFQTLNLEVTIQYNNRKLLNGILQAINIPTELTSDVILS 186

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDF-DDIISLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT      +S+    E +  P  A      
Sbjct: 187 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLQLSIADFKEAFNNPLVADGVNEL 246

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           ++L   L       A GI    IF       L M                 S G G  R 
Sbjct: 247 QQLQQYL------IALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGG-RY 299

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARL 372
              +     D              +    +   + +   A            C +I  +L
Sbjct: 300 DNIIGAFRGDDMSYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGTELQCLQIAQQL 359

Query: 373 SK---VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                +  ++         G +   A    +    P  +I+G + +    V +++   G 
Sbjct: 360 RSTTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEEICTETVMLRNMKEGS 413

Query: 426 REDMSLEEVINYA 438
              + L  + NY 
Sbjct: 414 EVKVPLSSLSNYL 426


>gi|329942395|ref|ZP_08291205.1| histidyl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|328815305|gb|EGF85293.1| histidyl-tRNA synthetase [Chlamydophila psittaci Cal10]
          Length = 409

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/407 (13%), Positives = 120/407 (29%), Gaps = 14/407 (3%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG-RYDSYGKEMLRLADRNDKAMI 105
                 V  +I +  +  G  E+  P  + +++++  G + D   KEM    D+  +++ 
Sbjct: 5   TSLWHRVEDVIHDVCSLYGFSEIRTPVFEKSEVFLHVGEQSDIVKKEMYTFLDKKGRSLT 64

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P     +   F  +  + R+    FY I   FR E +      +  +F ++       
Sbjct: 65  LRPEGTAPIVRSFIDNPMNQRD-DNKFYYILPMFRYERQQSGRYRQHHQFGVEALGVRHP 123

Query: 166 TPEG------SKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET 219
             +                       + LG ++   R +         H   + + + E 
Sbjct: 124 LRDAEILALLWHFYSAVGLQHMQVQLNFLGGEATRKRYDKILREYFHDHLSSLSSLSKER 183

Query: 220 QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                   +D   P +         +   +      Y          L  S   N R+  
Sbjct: 184 FNTNLLRILDSKEPEDQEIIKSAPPILDYISDDDHKYFDEILSALRDLNISYDINPRL-V 242

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG++      F    +     ++    G  +   + S G  +       I      + ++
Sbjct: 243 RGLDYYTDVVF-EAVTTYGGHSYALGGGGRYDGLIASSGGLSTPACGFGIGLERVIQTLL 301

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG--SQFAVADL 397
              +  P     + +   +      C      L  +G     D   +++    + A A+ 
Sbjct: 302 AQGNFTPLSSHKLRLIPVEPQADSFCFVWAQHLRSLGIPTEVDWTHKKLKTALKIADAE- 360

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
                   VG + +   ++ +K+         S +EV     +   N
Sbjct: 361 -KATFVCPVGERELVSEQLTVKNMSLHKEFSGSKQEVEQRLLYEIQN 406


>gi|313886853|ref|ZP_07820557.1| histidine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|332299959|ref|YP_004441880.1| Histidyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
 gi|312923650|gb|EFR34455.1| histidine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|332177022|gb|AEE12712.1| Histidyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
          Length = 459

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 66/459 (14%), Positives = 124/459 (27%), Gaps = 68/459 (14%)

Query: 44  PLG--------QKALDNVNAIIREEQNRTGAIEMSVPTLQ-------------SADLWVE 82
           P G         +  + +   IR      G  ++  P ++                L+  
Sbjct: 7   PKGTRDFGAEEMRRRNYIFETIRSVFALYGFEQIETPAMEQLTTLTGKYGVEGDRLLFKI 66

Query: 83  --SGRY------DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
             SG Y      +++ +E                            H ++    PF  YQ
Sbjct: 67  LNSGDYKAGIDAETFTEESPAALAARLCDRGLRYDLTVPFARYVVMH-RNELTFPFKRYQ 125

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +Q  +R +   +    R REF   DA          +  +  M     R         + 
Sbjct: 126 MQPVWRADRPQKG---RYREFYQCDADVIGTDSLMPEVDFVYMIDEVFRRLDLRTTLLLN 182

Query: 195 MRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW-- 252
            R     I      E I   D       C        + +   D  +       +E    
Sbjct: 183 NRKILAGIA-----EVIKAPDRLAQLTICMDKLDKTSVEAVLADLVESGFDPDSLEPVRK 237

Query: 253 --------------------TAPYAATSDVHNEKLFDSLPENKRVSA--------RGIEV 284
                                +          E + D +  +  ++         RG++ 
Sbjct: 238 VLTLEGSNRDKVTTLRQLLADSEIGLKGLEELEYVLDHVDTSDLMTDLTFSPSLARGLDY 297

Query: 285 GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                   K       +  G    D+   +      +   ++   E  +D    +     
Sbjct: 298 YTGAILEVKSLDAPMGSISGGGRYDNLTGIFGLDGVSGVGISFGAERIYDIMLSLGKFET 357

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           A      I I    +        I  +L + G         +++  Q + A+  G    +
Sbjct: 358 AMAPEERIIIVNFGEEELQKLLPIARQLRQAGLPTEVYPSADKMKKQLSYANSRGCRYVI 417

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           I GS+ +SD KV IK    G +++  LEE+++      S
Sbjct: 418 IAGSQELSDGKVSIKDMTLGTQQECPLEEIVSRLRESLS 456


>gi|294340466|emb|CAZ88847.1| histidine tRNA synthetase [Thiomonas sp. 3As]
          Length = 425

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/405 (12%), Positives = 99/405 (24%), Gaps = 33/405 (8%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYG 107
            +     +R      G   +  P L+   L+V   G   D   KEM    D  +   +  
Sbjct: 22  WEWFEEQVRALMGSYGYQNLRTPILEYTPLFVRGIGEVTDIVEKEMYSFTDALNGEPLTL 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
                              +     +     FR E   R    +  +   +         
Sbjct: 82  RPEGTAAVVRACIEHSLLYDGGKRLWYTGPMFRHERPQRGRYRQFHQVGAEALGFAGPDV 141

Query: 168 EGSKHSYNKMFVSYLRIFH-RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           +       +   + L +        +   +A+           ++      +      + 
Sbjct: 142 DVELILMARQLWARLGLSELVTLEINCLGQADERARHRVALIAYLEQH-IDQLDEDTRRR 200

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-------------KLFDSLPE 273
               P+   +T    + +L     +        S  H E              L   L  
Sbjct: 201 LHSNPLRVLDTKNPAMQALVEGAPKLIDYLGEASLAHFEGVQALLRAAGQSFTLNPRLVR 260

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   +        G + ++     + G              + +G  RV+  +IE+
Sbjct: 261 GLDYYNLTVFEWVTDRLGAQATVCAGGRYDGLIEQIGGKPTPACGWALGMERVLELLIEA 320

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             +                L+            CE     L   G  V     G  + SQ
Sbjct: 321 GQNAPVSAPHAYAVMTSPELM------SRVMPLCES----LRAAGVRVQLHMGGGSMKSQ 370

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSLE 432
              AD  G    ++ G + +   +V IK          +  + LE
Sbjct: 371 MKKADASGARWALVFGEQELQSGQVGIKDLRGAQDAQQQRMLPLE 415


>gi|170290860|ref|YP_001737676.1| histidyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|229558689|sp|B1L6B4|SYH_KORCO RecName: Full=Histidyl-tRNA synthetase
 gi|170174940|gb|ACB07993.1| histidyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 428

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 64/432 (14%), Positives = 131/432 (30%), Gaps = 38/432 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE-SGRY-DSYGKEMLR 95
           G   + P        V + I E   R G   +  P+L   + W    G+  +    +++ 
Sbjct: 7   GFRDFPPPMMILRKRVLSKIEEIFRRYGFDPIETPSL---EYWETVKGKLGEEAENKLMF 63

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           +         Y   +E          +     LPF  Y I   +R E   +    R REF
Sbjct: 64  IFPDFFSKEWYTLRYELTFPLARYVAMHPETPLPFKRYHIGNVWRHEEPQKG---RYREF 120

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
           L  DA         +      + +  ++ F            +   + G    E  +   
Sbjct: 121 LQCDADIVGSPYPEADAEVISVNIDAMKSFD--FENFRVRLNDRRLLTGVFEEELGINNP 178

Query: 216 ------------------TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
                              GE     + + +   I    +       +++   +      
Sbjct: 179 FPIYRAIDKLDKIGVDGVKGELARLGAHESLIGRIMELISTRGSFNEISNTFRRIENDKV 238

Query: 258 ATSDVHNEKLFDSLPENKRVSA----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
             +  H E++F  + +++ V      RG++      F T  S P   +  G    D  + 
Sbjct: 239 KVALDHLEEIFSIVSDDRLVFDLSLVRGLDYYTGPVFETSVSEPRIGSLAGGGRYDRLIG 298

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
           + S        V+  +E   D    +    ++    + + I +  +       +I   L 
Sbjct: 299 LYSGKDVPATGVSLGVERLIDAGLELGIFDLSERSYTDVFIVSVRRENWRYAWRISRILR 358

Query: 374 KVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           + G     D     +    ++  A+ +G  +   VG        V +  R   +R+ + +
Sbjct: 359 ERGFSTSLDLMRRSQSAQREY--ANKIGAKVIAFVGPSEEETETVTLYSRD--LRKTVKI 414

Query: 432 EEVINYASHRFS 443
            E+I+      S
Sbjct: 415 SELIDSLREFLS 426


>gi|15029520|ref|NP_036340.1| probable histidyl-tRNA synthetase, mitochondrial precursor [Homo
           sapiens]
 gi|332822164|ref|XP_517980.3| PREDICTED: probable histidyl-tRNA synthetase, mitochondrial isoform
           2 [Pan troglodytes]
 gi|1351156|sp|P49590|SYHM_HUMAN RecName: Full=Probable histidyl-tRNA synthetase, mitochondrial;
           AltName: Full=Histidine--tRNA ligase; Short=HisRS;
           AltName: Full=Histidine--tRNA ligase-like; Flags:
           Precursor
 gi|899109|gb|AAA73974.1| histidyl-tRNA synthetase homologue [Homo sapiens]
 gi|14043376|gb|AAH07680.1| Histidyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|15929049|gb|AAH14982.1| Histidyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|119582424|gb|EAW62020.1| histidyl-tRNA synthetase-like, isoform CRA_b [Homo sapiens]
 gi|123984443|gb|ABM83567.1| histidyl-tRNA synthetase-like [synthetic construct]
 gi|157928442|gb|ABW03517.1| histidyl-tRNA synthetase 2, mitochondrial (putative) [synthetic
           construct]
          Length = 506

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 72/484 (14%), Positives = 130/484 (26%), Gaps = 69/484 (14%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQK--------ALDNVNAIIREEQNRTGAI 67
            +A + S    L+    HQ         P G +          + +  ++     R GA 
Sbjct: 38  AEAVLTSQ---LKA---HQEKPNFIIKTPKGTRDLSPQHMVVREKILDLVISCFKRHGAK 91

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            M  P  +  +   E   Y      M  L D+  + +                     + 
Sbjct: 92  GMDTPAFELKETLTEK--YGEDSGLMYDLKDQGGELLSLRYDLTVPFARYLAM----NKV 145

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL-TPEGSKHSYNKMFVSYLR--- 183
                Y +   +R E  P     R REF   D        P        K+    L    
Sbjct: 146 KKMKRYHVGKVWRRE-SPTIVQGRYREFCQCDFDIAGQFDPMIPDAECLKIMCEILSGLQ 204

Query: 184 ----------------IFHRLGLKSIPMRAESGPI-------GGDLSHEFIVL------- 213
                           +F   G+     RA    I         D+ HE +V        
Sbjct: 205 LGDFLIKVNDRRIVDGMFAVCGVPESKFRAICSSIDKLDKMAWKDVRHEMVVKKGLAPEV 264

Query: 214 ADTGETQVFCS-------KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           AD     V C        + F D  +       + +  L  + E  T    A     +  
Sbjct: 265 ADRIGDYVQCHGGVSLVEQMFQDPRLSQNKQALEGLGDLKLLFEYLTLFGIADKISFDLS 324

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKY----SLPMSATFKGADGKDHYVQMGSYGIGAM 322
           L   L     V    + +      G +     S+     + G  G     +        +
Sbjct: 325 LARGLDYYTGVIYEAVLLQTPTQAGEEPLNVGSVAAGGRYDGLVG-MFDPKGHKVPCVGL 383

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            +    I    + +     + V   +  +          ++   K+ A L   G      
Sbjct: 384 SIGVERIFYIVEQRMKTKGEKVRTTETQVFVATPQKNFLQER-LKLIAELWDSGIKAEML 442

Query: 383 DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                ++ +Q    +  G PL VI+G + + +  ++I+   +     +  E  +     R
Sbjct: 443 YKNNPKLLTQLHYCESTGIPLVVIIGEQELKEGVIKIRSVASREEVAIKRENFVAEIQKR 502

Query: 442 FSNN 445
            S +
Sbjct: 503 LSES 506


>gi|255348920|ref|ZP_05380927.1| histidyl-tRNA synthetase [Chlamydia trachomatis 70]
 gi|255503460|ref|ZP_05381850.1| histidyl-tRNA synthetase [Chlamydia trachomatis 70s]
 gi|255507139|ref|ZP_05382778.1| histidyl-tRNA synthetase [Chlamydia trachomatis D(s)2923]
 gi|289525588|emb|CBJ15066.1| histidyl-tRNA synthetase [Chlamydia trachomatis Sweden2]
 gi|296435148|gb|ADH17326.1| histidyl-tRNA synthetase [Chlamydia trachomatis E/150]
 gi|296438868|gb|ADH21021.1| histidyl-tRNA synthetase [Chlamydia trachomatis E/11023]
          Length = 428

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/393 (12%), Positives = 115/393 (29%), Gaps = 15/393 (3%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLRLADRNDKAMIYG 107
               V        N  G  E+  P  +  + ++  G Y D   KE+    D+  +++   
Sbjct: 28  LWKRVEHAAHRICNLYGFDEIRTPVFEKTETFLRVGEYSDIVKKEVYTFLDKKRRSLTLR 87

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +      H    R     FY I   FR E +      +  +F ++         
Sbjct: 88  PEGTAAVVRALLDHSADMRK-DNKFYYILPMFRYERQQSGRYRQHHQFGLEAIGVRHPLR 146

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD------TGETQV 221
           +    S    F + + + H     +     ++     +   EF           + E   
Sbjct: 147 DAEVLSLLWDFYAAVGLQHMQIHVNFLGGQKTRARYDEALREFFRKDLDRLSPLSQERYH 206

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                 +D   P +    +   S+   ++     Y        + L      N R+  RG
Sbjct: 207 ANLLRILDSKEPEDQEFIEKAPSILDYIDDRDLSYFDAVLAQLKALGIPFAINPRL-VRG 265

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           ++      F    ++    ++    G  +   +   G  +M      +      + ++  
Sbjct: 266 LDYYTDLVF-EAVTVVGEHSYALGGGGRYDELVAQSGGPSMPAFGFGVGLERVIQTLLEQ 324

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            +        + +   D+     C     RL  +G     D   ++       A      
Sbjct: 325 GNFLSTSTRRLRLIPMDEQADAFCFSWANRLRNLGIATEVDWSHKKPKLSLKDAADQQVS 384

Query: 402 LQVIVGSKFVSDSKVEIKHRL-----TGIREDM 429
              ++G + ++  +  +K        +G ++D+
Sbjct: 385 FVCLLGEQELATKQFIVKDMSLHQSFSGAQQDV 417


>gi|33240753|ref|NP_875695.1| seryl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|46577201|sp|Q7VAZ8|SYS_PROMA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|33238281|gb|AAQ00348.1| Seryl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 425

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 72/194 (37%), Gaps = 12/194 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +   ++   + +     G  E+  P L +      SG+   + +E  + +   +  +
Sbjct: 172 HGARLERSLINFMLDIHTSKGYSEVLPPVLVNTASLEGSGQLPKFAEESFKCS---EDDL 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T + R+ +  +  LP  +      FR E     R   G++R  +F   + 
Sbjct: 229 WLTPTAEVPLTSLHRNEVIPFEKLPIKYVAYSPCFRREAGSYGRDTRGLIRLHQFNKVEL 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
           Y F   P+ SK ++  +      I  +L L    +   SG +G   S     E  +    
Sbjct: 289 YWFVE-PKKSKEAHQIITADAEAILQKLELPYRVVELCSGDLGFSASCTYDLEVWLPGAN 347

Query: 217 GETQVFCSKDFMDF 230
              ++    +  DF
Sbjct: 348 SYREISSCSNCDDF 361


>gi|159903816|ref|YP_001551160.1| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
 gi|159888992|gb|ABX09206.1| Seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
          Length = 442

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 66/200 (33%), Gaps = 12/200 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + L  G +    +   + +  ++ G +E+  P L +      SG+   + +E  R   
Sbjct: 181 FVTLLNQGARLERALINFMLDMHSKKGYLEVLPPVLVNTASLTASGQLPKFSEESFRC-- 238

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  I     LP  +      FR E     R   G++R  +
Sbjct: 239 -AEDDLWLTPTAEVPLTSLHRGEIIPSEELPIKYVAYTPCFRREAGSYGRDTRGLIRLHQ 297

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   + + F    +               I   L L    +   +G +G   S     E 
Sbjct: 298 FNKVELFWFVHPEKSPAAHEQITKD-AESILQALELPYRVLELCTGDLGFSASRTYDLEV 356

Query: 211 IVLADTGETQVFCSKDFMDF 230
            +       ++  S    DF
Sbjct: 357 WLPGANAYREISSSSICNDF 376


>gi|15231337|ref|NP_190196.1| ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1); histidine-tRNA ligase
           [Arabidopsis thaliana]
 gi|3659909|gb|AAC61600.1| histidyl-tRNA synthetase [Arabidopsis thaliana]
 gi|7798998|emb|CAB90937.1| histidyl-tRNA synthetase [Arabidopsis thaliana]
 gi|15810389|gb|AAL07082.1| putative histidyl-tRNA synthetase [Arabidopsis thaliana]
 gi|21436315|gb|AAM51327.1| putative histidyl-tRNA synthetase [Arabidopsis thaliana]
 gi|332644592|gb|AEE78113.1| Histidyl-tRNA synthetase 1 [Arabidopsis thaliana]
          Length = 486

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 60/415 (14%), Positives = 130/415 (31%), Gaps = 33/415 (7%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDK 102
           P   +  + +    +E     G  E+  P L++  L+  ++G  +    ++    DR ++
Sbjct: 80  PEDMRLRNWLFNHFKEVSRLYGYEEVDYPVLETEALFIRKAG--EEIRDQLYCFEDRGNR 137

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +   P     +  +     KS  +LP  ++ I   +R E   R    R RE    +   
Sbjct: 138 RVALRPELTPSLARLVIQKGKS-VSLPLKWFAIGQCWRYERMTRG---RRREHYQWNMDI 193

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP--MRAESGPIGGDLSHEFIVLADTGETQ 220
             +    ++     +  S +  F R+G+ +     +  S  +  +L  ++ V  D     
Sbjct: 194 IGVPQVTAEAE---LISSIVTFFKRIGITASDVGFKVSSRKVLQELLKKYGVPEDLFGRV 250

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF----DSLPENKR 276
                     PI     +          +EQ     +  S    E +     +++ + K+
Sbjct: 251 CIIIDKIEKIPIDEIKKELGFTGISEDAIEQLLQVLSVKSLDDLEDIIGGAGEAIADLKQ 310

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG--SYGIGAMRV---------- 324
           + +   + G+  +     S+     +      + + + G      G  R           
Sbjct: 311 LFSLAEKFGYSEWIQFDASVVRGLAYYTGIVFEGFDRKGKLRAICGGGRYDRLLSTYGGD 370

Query: 325 -VAAVIESSHDGKGIIWPDSVAPFKISLI----NIKAHDQVCRDACEKIYARLSKVGCDV 379
              A      D   +                   + A D+  + A   +   L   G  V
Sbjct: 371 DFPACGFGFGDAVIVELLKEKDLLPELGQEVENIVCALDKDLQGAAATVATALRDKGQTV 430

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
                 + +   F  A  +     V+VG     D  V +K   +G +  + L ++
Sbjct: 431 DLVLESKPLKWVFKRAARVNARRLVLVGKTEWEDGSVSVKVLSSGEQFQVKLSDL 485


>gi|217960736|ref|YP_002339300.1| histidyl-tRNA synthetase [Bacillus cereus AH187]
 gi|229139939|ref|ZP_04268503.1| Histidyl-tRNA synthetase 1 [Bacillus cereus BDRD-ST26]
 gi|217065497|gb|ACJ79747.1| histidyl-tRNA synthetase [Bacillus cereus AH187]
 gi|228643454|gb|EEK99721.1| Histidyl-tRNA synthetase 1 [Bacillus cereus BDRD-ST26]
          Length = 426

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 60/423 (14%), Positives = 129/423 (30%), Gaps = 33/423 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 12  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 71

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 72  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 126

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 127 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILQAINIPTELTSDVILS 186

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPY---AATSD 261
            D  E          V       +      NT    +  ++    E +  P         
Sbjct: 187 LDKIEKIGIDGVRKDVLERGITEELADTICNTVLSCLKLTIADFKEAFNNPLVADGVNEL 246

Query: 262 VHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++   +L  N+         RG+ +     +          +  G+ G+   +    
Sbjct: 247 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAF 306

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV- 375
            G         +          +           +  I    ++    C +I  +L    
Sbjct: 307 RGDNMNYPTVGISFGLDVIYTALAQKETISSTADVFIIPLGTELQ---CLQIAQQLRSTT 363

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              +  +  G ++      A+    P  +I+G + +S     +++   G    + L  + 
Sbjct: 364 SIKIELELAGRKLKRALNYANKENIPYVLIIGEEELSTETAMLRNMKEGSEVKVPLSSLS 423

Query: 436 NYA 438
           NY 
Sbjct: 424 NYL 426


>gi|189066563|dbj|BAG35813.1| unnamed protein product [Homo sapiens]
          Length = 506

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 72/484 (14%), Positives = 130/484 (26%), Gaps = 69/484 (14%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQK--------ALDNVNAIIREEQNRTGAI 67
            +A + S    L+    HQ         P G +          + +  ++     R GA 
Sbjct: 38  AEAVLTSQ---LKA---HQEKPNFIIKTPKGTRDLSPQHMVVREKILDLVISCFKRHGAK 91

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            M  P  +  +   E   Y      M  L D+  + +                     + 
Sbjct: 92  GMDTPAFELKETLTEK--YGEDSGLMYDLKDQGGELLSLRYDLTVPFARYLAM----NKV 145

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL-TPEGSKHSYNKMFVSYLR--- 183
                Y +   +R E  P     R REF   D        P        K+    L    
Sbjct: 146 KKMKRYHVGKVWRRE-SPTIVQGRYREFCQCDFDIAGQFDPMIPDAECLKIMCEILSGLQ 204

Query: 184 ----------------IFHRLGLKSIPMRAESGPI-------GGDLSHEFIVL------- 213
                           +F   G+     RA    I         D+ HE +V        
Sbjct: 205 LGDFLIKVNDRRIVDGMFAVCGVPESKFRAICSSIDKLDKMAWKDVRHEMVVKKGLAPEV 264

Query: 214 ADTGETQVFCS-------KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           AD     V C        + F D  +       + +  L  + E  T    A     +  
Sbjct: 265 ADRIGDYVQCHGGVSLVEQMFQDPRLSQNKQALEGLGDLKLLFEYLTLFGIADKISFDLS 324

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKY----SLPMSATFKGADGKDHYVQMGSYGIGAM 322
           L   L     V    + +      G +     S+     + G  G     +        +
Sbjct: 325 LARGLDYYTGVIYEAVLLQTPTQAGEEPLNVGSVAAGGRYDGLVG-MFDPKGHKVPCVGL 383

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            +    I    + +     + V   +  +          ++   K+ A L   G      
Sbjct: 384 SIGVERIFYIVEQRMETKGEKVRTTETQVFVATPQKNFLQER-LKLIAELWDSGIKAEML 442

Query: 383 DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                ++ +Q    +  G PL VI+G + + +  ++I+   +     +  E  +     R
Sbjct: 443 YKNNPKLLTQLHYCESTGIPLVVIIGEQELKEGVIKIRSVASREEVAIKRENFVAEIQKR 502

Query: 442 FSNN 445
            S +
Sbjct: 503 LSES 506


>gi|197294530|ref|YP_001799071.1| histidyl-tRNA synthetase [Candidatus Phytoplasma australiense]
 gi|226737076|sp|B1VA46|SYH_PHYAS RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|171853857|emb|CAM11819.1| Histidyl-tRNA synthetase [Candidatus Phytoplasma australiense]
          Length = 415

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/418 (13%), Positives = 124/418 (29%), Gaps = 25/418 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE-SGRYDSYGKEMLRL 96
           G +  LP    +   V         +    E+  P ++ A+++   +   +   KE    
Sbjct: 7   GTHDLLPTQTTSWQKVENSFHSFFKKHQFQEIRTPIMEYAEVFHRAAQHSEMVSKETYAF 66

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+ ++ +   P     +   +  +     N    FY     FR E RP+FG  R  +F 
Sbjct: 67  PDKKNRLITLRPEGTAGIVRSYIENKLDQTNKLQKFYYYGPYFRYE-RPQFGRYR--QFH 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                    T          +   +L+      +        S     D    F      
Sbjct: 124 QLGVEVLGKTTPFLDIEVITLIYQFLKSLGLDDITIQINSLGSKEDHLDYVDIFKQYLKI 183

Query: 217 --GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                   C +     P+   +     +        +     +  S    + + + L E 
Sbjct: 184 YSNYLCGLCHERLNKNPLRIWDCKTCHLQDFLKQAPKIFDSLSPKSKKRFQTVLNGL-EA 242

Query: 275 KRVSARG---IEVGHIFYFGTKYSLPMSATFKGADGKDHYV-------QMGSYGIGAMRV 324
            +V+ +    +  G  +Y  T + +  +    G  G   ++       Q+   G      
Sbjct: 243 MKVNFKTCHDLVRGLDYYTHTVFEITFNKMVLGGGGCYDHLVAALGGNQLSGIGFALGME 302

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
              +    ++   +    S+  F   L  +  H          +   L   G  V ++  
Sbjct: 303 RLMLTLQENNNFFVSPQPSLKLFLFILDPVFFHH------GLTLVHILRNEGFCVEFNYS 356

Query: 385 GEQIGSQFAVADLLGFP-LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                     A L   P   +I+G +  +  ++ IK+  T  +  +  +++I Y   +
Sbjct: 357 FTTFTKGLKEA-LKCLPNYLLILGHQEFAKKQITIKNIKTHTQTTIDQKDLIFYFQQQ 413


>gi|326789959|ref|YP_004307780.1| seryl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326540723|gb|ADZ82582.1| seryl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 427

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 13/217 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   ++ G  E+  P + +      +G+   + ++  ++ 
Sbjct: 162 FVFYKGLGARLERAIMNFMLDMHVDKHGYTEVFPPLMVNRASMTGTGQLPKFEEDAFKVV 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D         PT E  +T+++R  I   ++L          FR E     R   G++R  
Sbjct: 222 D---TDYFLIPTAEVPVTNMYRDQILDGKDLVIKHCAYTPCFRAEAGSAGRDTRGIIRQH 278

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHE 209
           +F   +   F    +               I   LGL    +R  +G +G         E
Sbjct: 279 QFNKVEMVKFTKPEDSYDELEKLTND-AEDILKTLGLPYRVVRLCTGDLGFSSAMTYDIE 337

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             + +     ++    DF DF     N  F D     
Sbjct: 338 VWMPSYGRYVEISSCSDFEDFQARRANIKFKDNKEDK 374


>gi|182439819|ref|YP_001827538.1| histidyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326780483|ref|ZP_08239748.1| Histidyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
 gi|229558743|sp|B1W3H3|SYH_STRGG RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|178468335|dbj|BAG22855.1| putative histidyl-tRNA synthetase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326660816|gb|EGE45662.1| Histidyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
          Length = 420

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/421 (13%), Positives = 116/421 (27%), Gaps = 26/421 (6%)

Query: 38  GIYSWLPLG----QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           G Y   P          + + A +R+    +G   +  P  ++ +L+        D   K
Sbjct: 9   GTYDLTPPRSATFLAVREAIAAPLRD----SGYGYIETPGFENVELFARGVGESTDIVTK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM  L  +    +   P     +             NLP   +     +R E        
Sbjct: 65  EMYTLTTKGGSQLALRPEGTASVLRAALEANLHKAGNLPVKLWYSGSYYRYERPQAG--- 121

Query: 151 RSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLS 207
           R R F    A       P            +Y  +  R     +    +    P+  +  
Sbjct: 122 RYRHFSQVGAEAIGTEDPVLDAELIILADQAYRSLGLRRFRILLNSLGDKECRPVYREAL 181

Query: 208 HEFIVLADTGETQVFCSK----DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVH 263
             F+   D  E      +      +D           D   L   +      Y       
Sbjct: 182 QTFLRDLDLDEETRRRIEINPLRVLDDKRADVRKQLTDAPKLRDYLCDACKAYHEEVRAL 241

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
                 +  E+     RG++      F   +    + +  G  G+   +     G     
Sbjct: 242 LTTAGVAF-EDDEKLVRGLDYYTRTTFEFVHDGLGAQSAVGGGGRYDGLSEMIGGPELPS 300

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           V  A+               +     + +      +  R     +   L + G    +  
Sbjct: 301 VGWALGVDRTVLALEAEGIELDLPSTTSVYAVPLGEEARRVLFGVVTELRRAGVAADFAF 360

Query: 384 --MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              G + G+    A+  G    ++ G + +++  V++K   +G +  ++L EV    + R
Sbjct: 361 GGRGLK-GAM-KSANRSGARYTLVAGERDLAEGVVQLKDMESGEQGPVALAEVAAELTKR 418

Query: 442 F 442
            
Sbjct: 419 L 419


>gi|332882901|ref|ZP_08450508.1| serine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679109|gb|EGJ52099.1| serine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 429

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E  ++G  E+  PT+ +      +G+      +M  
Sbjct: 164 GAGFPVYRGKGARLQRALINFFLDEARKSGYEEIMPPTVVNEASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                       PT E  +T+I+R  I   ++LP         FR E     +   G+ R
Sbjct: 224 CNL---DDFYLIPTAEVPVTNIYRDVILDEKDLPVKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHE 209
             EF   +    D  PE S+ S+ +M      +  +L L    +R   G +     + ++
Sbjct: 281 LHEFSKVELVRIDK-PEHSEQSHQEMLAHVEGLLQKLELPYRILRLCGGDMSFTSSICYD 339

Query: 210 FIVLADTGETQV 221
           F V ++  +  +
Sbjct: 340 FEVYSEAQKRWL 351


>gi|228940377|ref|ZP_04102948.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228973294|ref|ZP_04133883.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979857|ref|ZP_04140178.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis Bt407]
 gi|228779872|gb|EEM28118.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis Bt407]
 gi|228786490|gb|EEM34480.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819503|gb|EEM65557.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326941014|gb|AEA16910.1| histidyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 425

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 69/415 (16%), Positives = 128/415 (30%), Gaps = 35/415 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLKDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ES  I  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEADLMSMAFELFRTLNLEVTIQYNNRKLLNGILESINIPTELTSDVILS 185

Query: 214 ADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            D  E        KD ++  I  E  D      L+ +              +N+ + D +
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIADF---KEAFNNQLVADGV 242

Query: 272 PENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            E +++       GI    IF       L M                 S G G  R    
Sbjct: 243 NELQQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGG-RYDNI 301

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLSKV 375
           +     D              +    +   + +   A            C +I  +L   
Sbjct: 302 IGAFRGDNMNYPTVGISFGLDVIYTALSQKETISSTADLFIIPLGTELQCLQIAQQLRST 361

Query: 376 -GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
               V  +  G ++      A+    P  +I+G   +S   V +++   G    +
Sbjct: 362 TSLKVELELAGRKLKRALNYANKENIPYVLIIGEDELSTETVMLRNMKEGSEVKV 416


>gi|167629223|ref|YP_001679722.1| seryl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
 gi|238687865|sp|B0TAQ9|SYS_HELMI RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|167591963|gb|ABZ83711.1| seryl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
          Length = 422

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 66/203 (32%), Gaps = 12/203 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    V  ++ +   + G  E+  P L +    + +G+   + ++M           
Sbjct: 168 LGARLERAVINLMMDTHAQRGYTEVLPPYLVNRQSMLGTGQLPKFAEDMF---AVAGTDY 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDA 160
              PT E  +T+++ + I     LP         FR E         G++R  +F   + 
Sbjct: 225 YLIPTAEVPVTNLYTNEILDADKLPIHHCAYSACFRAEAGAAGRDTRGLIRQHQFNKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F                    I   LGL    +   +G +G   +     E  + +  
Sbjct: 285 VKFTRPENSYDELEKLTKD-AEHILQLLGLPYRVITLCTGDMGFSAAKTYDIEVWLPSFG 343

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +F DF     N  F
Sbjct: 344 AYREISSCSNFEDFQARRANIRF 366


>gi|281422088|ref|ZP_06253087.1| histidine--tRNA ligase [Prevotella copri DSM 18205]
 gi|281403877|gb|EFB34557.1| histidine--tRNA ligase [Prevotella copri DSM 18205]
          Length = 454

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 65/452 (14%), Positives = 128/452 (28%), Gaps = 56/452 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ-------------SADLWVE-- 82
           G   + P+     + +   I+E     G  ++  P ++                L+    
Sbjct: 10  GTRDFGPVEMAKRNYIFNTIKEVYALYGFQQIETPAMETLQTLMGKYGEEGDKLLFKILN 69

Query: 83  SGRY-----DSYGKEMLRLADRND-KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQ 136
           SG Y     D     +  L                         H +    +PF  YQIQ
Sbjct: 70  SGDYMNKVSDEDIHSLGSLKLAAKLCEKGLRYDLTVPFARYVVQH-REELQMPFKRYQIQ 128

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH-RLGLKSIPM 195
             +R +   +    R REF   DA         ++    ++  +    F  R+ +K    
Sbjct: 129 PVWRADRPQKG---RYREFYQCDADVVGSDSLLNEVELMQIVDTVFTKFGVRVCIKINNR 185

Query: 196 RAESGPIGGDLSHEFIVLADTGETQV-----------FCSKDFMDFPIPSENTDFDDIIS 244
           +  +G        E IV       ++             +    +  I           +
Sbjct: 186 KILTGIAEVIGEAEKIVDITVAIDKLDKIGLDNVNEELRNDGISEEAIEKLQPIISLSGT 245

Query: 245 LNSIVEQ-----WTAPYAATSDVHNEKLFDSLP----ENKRVSARGIEVGHIFYFGTKYS 295
            +  +E        +          + + D+L      N+      +  G  +Y G  + 
Sbjct: 246 NDEKLEVIAKVLEGSEVGLKGVEETKFILDTLKTLGLNNEIELDLTLARGLNYYTGAIFE 305

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI-----IWPDSVAPFKIS 350
           +    T  G+          +   G   +    I    D               A     
Sbjct: 306 VKALDTPMGSITGGGRYDNLTGIFGLPGLSGVGISFGADRIYDVLGALDLYPKEAVNATQ 365

Query: 351 LINIKAHDQVCRDACEKIYARLSKVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGS 408
           ++ I   ++     C  I +     G       D    ++  Q + A+    P  V+ G 
Sbjct: 366 VLFINFGEKET-AYCLPIVSAARAAGIRTEIFPD--KAKMKKQMSYANAKNIPFVVLAGE 422

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
             ++  KV +K+  TG +  ++ EE+I   + 
Sbjct: 423 NEMAQGKVTLKNMETGEQTLVTAEELIAKVNK 454


>gi|320165203|gb|EFW42102.1| glycyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 636

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 85/247 (34%), Gaps = 28/247 (11%)

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
           EF +     E  +    +       S   + DDI+ L        A YA           
Sbjct: 376 EFFIPPGDHEPWLQYWVNSRTQWWRSLLRNPDDIVQLPIPKRDL-AHYARACVDLEYNFP 434

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               E + V+ARG         G+  +L +        G      +     G  R V AV
Sbjct: 435 WGRGELEGVAARGSHDLDAHEAGSGANLRVPGA---QPGSVVVPHVIEPSAGLTRGVLAV 491

Query: 329 IESSHDGKGII----------------WPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
           +  +    G                      +AP+K +L+ + A  +   +A   +  RL
Sbjct: 492 LCDALHEVGPGDPRYSDKSSEQRLVLALHPRLAPYKAALLPVVAK-EPLMEAARNMEERL 550

Query: 373 -SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
            ++ G  V +DD    IG ++   D LG PL V   S+      + +++R T   E MS 
Sbjct: 551 VNEFGLAVIYDD-ARSIGKRYQRQDELGTPLCVAFDSEG-----ITVRNRDTSKSERMSE 604

Query: 432 EEVINYA 438
           E+ I   
Sbjct: 605 EDAIQLI 611


>gi|319763712|ref|YP_004127649.1| histidyl-tRNA synthetase [Alicycliphilus denitrificans BC]
 gi|317118273|gb|ADV00762.1| histidyl-tRNA synthetase [Alicycliphilus denitrificans BC]
          Length = 429

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 70/426 (16%), Positives = 125/426 (29%), Gaps = 31/426 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      + +   +R    R     +  P ++   L+V   G   D   KEM  
Sbjct: 9   GMNDILPPESARWEWLEDTVRTLMARYAYRNIRTPIVEPTPLFVRGLGEVTDIVEKEMYS 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             DR +   +                     +     Y +   FR E   R    R R+F
Sbjct: 69  FEDRLNGEQLTLRPEATAGVVRAVVEHSMLYDGGKRLYYMGPMFRHERPQRG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
               A +       +        +    ++  LGLK + +   S     +       L  
Sbjct: 126 HQIGAEALGFPGAEADAEI---ILLAHALWAELGLKDVRLELNSLGQPDERRAHRAALIA 182

Query: 216 TGETQV-----FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
             E           +     P+   +T    + ++     +        S  H E +   
Sbjct: 183 HLEQHQDALDEDARRRLHSNPLRILDTKNPAMQAVVEAAPRLIDFLGEASLKHFETVKAI 242

Query: 271 LPENKRVS------ARGIEVG--HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
           L  N           RG++     +F F T     + +      G  +   +   G    
Sbjct: 243 LDANGVAWSLNPRLVRGMDYYNLTVFEFVTD---QLGSQGTICGGGRYDYLIEQIGGKPA 299

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
             V   +      + I   ++ AP  ++       D            RL  +G  V   
Sbjct: 300 PAVGWALGVERVLELIKEQEAQAPRPVADAYAIVPDASALPVVMAALQRLRALGVSVQMH 359

Query: 383 D---MGEQIGSQ---FAVADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVI 435
                GE +GS    F  AD  G    ++ G+  ++   V IK  R  G + +  L  + 
Sbjct: 360 SPTAAGEGMGSMKSQFKKADASGSRFALVFGADEMARGAVTIKPLRDGGEQVERPLATLA 419

Query: 436 NYASHR 441
           ++A+  
Sbjct: 420 DWAASL 425


>gi|126658831|ref|ZP_01729975.1| seryl-tRNA synthetase [Cyanothece sp. CCY0110]
 gi|126619929|gb|EAZ90654.1| seryl-tRNA synthetase [Cyanothece sp. CCY0110]
          Length = 427

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 68/206 (33%), Gaps = 12/206 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + ++Q   G +E+  P L ++     +G+   + +E  ++    D  + 
Sbjct: 176 GAALERALINFMLDQQIAAGYLEVMPPVLINSSALQGTGQLPKFAEESFKV---PDDDLW 232

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++   I     LP         FR E     +   G++R  +F   +  
Sbjct: 233 LAPTAEVPVTNLYSGEILEAETLPIKHCAFTPCFRREAGSYGKDTRGLIRLHQFNKVELV 292

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                         ++      I   L L    +   +G +G   +     E  + +   
Sbjct: 293 KLVHPETSEVAH-QQLVNDAEAILQALKLPYRVLELCTGDLGFGATKCYDLEVWLPSSNS 351

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDII 243
             ++    +  DF     N  F +  
Sbjct: 352 YREISSCSNCWDFQARRANIRFKEKG 377


>gi|291333294|gb|ADD93002.1| histidyl tRNA synthetase [uncultured archaeon MedDCM-OCT-S04-C163]
          Length = 444

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 59/444 (13%), Positives = 123/444 (27%), Gaps = 53/444 (11%)

Query: 44  PLGQK-----ALDN---VNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEML 94
           P G +      ++       ++ +   R+G   +  P  +S +L+  +SG+      ++ 
Sbjct: 5   PRGTRDFTPKVMNRRLAFEQLLEKCARRSGFNRVQTPVFESLELFTAKSGQ--GVISQLY 62

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKS---------------YRNLPFTFYQIQLKF 139
              D+  + +   P     +  +    +++               Y       Y+   ++
Sbjct: 63  AFEDKGARPLTLRPELTAPVMRMIAEEMRNDTKPLRLSYFGQCYRYEEFKKGRYREFFQY 122

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
             EL    G +   E +       D                       LGL S       
Sbjct: 123 GVELVGASGPLAEAEVIALAISMLDACGLKDWQIRIGHVGILKDALSGLGLSSETSEGAG 182

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ---WTAPY 256
            P             D G   +  S               D      ++       ++  
Sbjct: 183 EPPIASAMRFLDKGDDKGLEALLESNGIAAKNAAPLRALADLEGGAETLGPARDILSSLE 242

Query: 257 AATSDVHNE-----------KLFDSLPENKRVSARGIEV--GHIFY-------FGTKYSL 296
             + D  +E                        ARG++   G +F           +   
Sbjct: 243 GVSLDALDELQVTLDSVAALAPAPPSLAVDLTVARGLDYYTGMVFEVIVPSMGGEGQVLG 302

Query: 297 PMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
             S       G         +G+G  RV+ A+   +                  +  I  
Sbjct: 303 GGSYKLLHLFGLTDLDPCCGFGLGFDRVLLALEAQAAAENRSEVVPGELDDMSLIACIPF 362

Query: 357 HDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
           +  V +     +   L   G  V  +  G +IG     A+ +G    ++VG + +   + 
Sbjct: 363 NIDVSQ--VLPLVGELRAKGQRVELELRGRKIGKAMNWANGIGATTTMVVGPRDLEQGQC 420

Query: 417 EIKHRLTGIREDM--SLEEVINYA 438
            +K+  TG ++ +  S+E +I   
Sbjct: 421 MLKNLQTGEQQAVALSVEAIIEAL 444


>gi|158522755|ref|YP_001530625.1| seryl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
 gi|238686901|sp|A8ZXS1|SYS_DESOH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|158511581|gb|ABW68548.1| seryl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
          Length = 425

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 76/239 (31%), Gaps = 19/239 (7%)

Query: 14  NPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIE 68
            PR  E     L +    R   I         +   G      +   + +      G  E
Sbjct: 136 APRPHEEIGEALGIFDFARAAKI--AGARFPLYKGAGALMERALINFMLDIHTTEHGYTE 193

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
              P + +A     +G+   + +++ +L           PT E  +T+IF   I +  +L
Sbjct: 194 CLPPLMVNAKTMTGTGQLPKFEEDLFKLE---RWGFYLIPTAEVPVTNIFADEILNEADL 250

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     +   G++R  +F   +   F            K+      I
Sbjct: 251 PIKYTAYTPCFRSEAGSYGKDTKGLIRQHQFNKVELVKFAHPEHSYDEL-EKLLADAETI 309

Query: 185 FHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             RLGL    +   SG +G   +     E    A     ++    +F DF     N  F
Sbjct: 310 LQRLGLAYRVITLCSGDMGFSAAKTYDIEVWFPAQNRYREISSCSNFEDFQARRANIRF 368


>gi|225460059|ref|XP_002271456.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 851

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 59/419 (14%), Positives = 115/419 (27%), Gaps = 36/419 (8%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           LP G +          +   +II +   R GA+ +  P  +  +  +  G+Y    K + 
Sbjct: 446 LPKGTRDFAKEQMAVREKAFSIIGDVFKRHGAMALDTPVFELRETLM--GKYGEDSKLIY 503

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            LAD+  +                         L         K      P  G  R  E
Sbjct: 504 DLADQGGELCSLRYDLTVPFARYVAM-----NGLTSFKRYQIAKVYRRDNPSKGRYR--E 556

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMF-VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           F   D     L           +  V   +            +     I  ++  E  + 
Sbjct: 557 FYQCDFDXVKLNHRKLLDGMLDICGVPPEKFRTICSSIDKLDKQTFEQIKREMVEEKGLT 616

Query: 214 ADTGETQVFCSKDFMD--FPIPSENTDFDDIISLNSIVEQWTAPYA-----ATSDVHNEK 266
            +T E      K+       +     +  + +  N+ V   T           S   N+ 
Sbjct: 617 IETAEKIGTFVKERGPPLELLSKLKQEGSEFLGNNASVAALTDLEILFTALEKSKCINKV 676

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKY-SLPMSATFKGADGKDHYVQMGSYGI--GAMR 323
           +FD           G+    +F   T+  S+     +    G     Q+ + G   G  R
Sbjct: 677 VFDLSLARGLDYYTGVIFEAVFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGTSLGIER 736

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
           V   + +   D    I             N  +          ++ + L        +  
Sbjct: 737 VFNIMEQLQKDQNQAIRATETQVLVSIFGNDLSQ-------AAELVSELWNAKLKAEY-M 788

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           + ++    F  A+    P  ++VG +  ++  V ++   T     +    ++     R 
Sbjct: 789 VNKRPTKHFDRAEESRIPWMILVGEREQNEGIVRLRDTTTREEILVPRSRIVEELQRRL 847


>gi|119512876|ref|ZP_01631941.1| Histidyl-tRNA synthetase, class IIa [Nodularia spumigena CCY9414]
 gi|119462458|gb|EAW43430.1| Histidyl-tRNA synthetase, class IIa [Nodularia spumigena CCY9414]
          Length = 462

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQV 404
               ++ +             +   L + G +V   +D     +G QF +AD  G    V
Sbjct: 367 TPAQVMVVNMQ-ADLMPIYLNVSQELRRAGLNVVTNFDKRP--LGKQFQLADKQGIQFCV 423

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           I+GS+  +  K  +K   +G + +++LE +      R 
Sbjct: 424 IIGSEEAAAQKSSLKDLKSGEQIEVTLENLAGEIKKRL 461


>gi|78212123|ref|YP_380902.1| seryl-tRNA synthetase [Synechococcus sp. CC9605]
 gi|123578699|sp|Q3AM35|SYS_SYNSC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78196582|gb|ABB34347.1| seryl-tRNA synthetase [Synechococcus sp. CC9605]
          Length = 425

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 62/176 (35%), Gaps = 8/176 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + +  G +    +   + +     G  E+  P L ++     SG+   + +E  R   
Sbjct: 166 FVTLMGQGARLERALINFMLDLHTSKGYREVLPPVLVNSASLTGSGQLPKFAEESFRC-- 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  I     LP  +      FR E     R   G++R  +
Sbjct: 224 -AEDDLWLTPTAEVPVTSLHRDEIIPADQLPLRYAAYSPCFRREAGSYGRDTRGLIRLHQ 282

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           F   + Y F   P+ S  ++ ++      +   L L    +   +  +G      +
Sbjct: 283 FNKVELYWFVH-PDHSDEAHQRITADAEAVLQALELPYRVLDLCTADLGFSARRTY 337


>gi|15605272|ref|NP_220058.1| histidyl-tRNA synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789280|ref|YP_328366.1| histidyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|237802972|ref|YP_002888166.1| histidyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804894|ref|YP_002889048.1| histidyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311361|ref|ZP_05353931.1| histidyl-tRNA synthetase [Chlamydia trachomatis 6276]
 gi|255317662|ref|ZP_05358908.1| histidyl-tRNA synthetase [Chlamydia trachomatis 6276s]
 gi|7674346|sp|O84547|SYH_CHLTR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|123606800|sp|Q3KLF4|SYH_CHLTA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|3328982|gb|AAC68145.1| Histidyl tRNA Synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167810|gb|AAX50818.1| histidyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|231273194|emb|CAX10107.1| histidyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274206|emb|CAX11000.1| histidyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|296436076|gb|ADH18250.1| histidyl-tRNA synthetase [Chlamydia trachomatis G/9768]
 gi|296437004|gb|ADH19174.1| histidyl-tRNA synthetase [Chlamydia trachomatis G/11222]
 gi|296437937|gb|ADH20098.1| histidyl-tRNA synthetase [Chlamydia trachomatis G/11074]
 gi|297140437|gb|ADH97195.1| histidyl-tRNA synthetase [Chlamydia trachomatis G/9301]
          Length = 428

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/393 (13%), Positives = 116/393 (29%), Gaps = 15/393 (3%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLRLADRNDKAMIYG 107
               V        N  G  E+  P  +  + ++  G Y D   KE+    D+  +++   
Sbjct: 28  LWKRVEHAAHRICNLYGFDEIRTPVFEKTETFLRVGEYSDIVKKEVYTFLDKKRRSLTLR 87

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +      H    R     FY I   FR E +      +  +F ++         
Sbjct: 88  PEGTAAVVRALLDHSADMRK-DNKFYYILPMFRYERQQSGRYRQHHQFGLEAIGVRHPLR 146

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD------TGETQV 221
           +    S    F + + + H     +     ++     +   EF           + E   
Sbjct: 147 DAEVLSLLWDFYAAVGLQHMQIHVNFLGGQKTRARYDEALREFFRKDLDRLSPLSQERYH 206

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                 +D   P +    +   S+   ++     Y        + L  S   N R+  RG
Sbjct: 207 ANLLRILDSKEPEDQEFIEKAPSILDYIDDRDLSYFDAVLAQLKALGISFAINPRL-VRG 265

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           ++      F    ++    ++    G  +   +   G  +M      +      + ++  
Sbjct: 266 LDYYTDLVF-EAVTVVGEHSYALGGGGRYDELVAQSGGPSMPAFGFGVGLERVIQTLLEQ 324

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            +        + +   D+     C     RL  +G     D   ++       A      
Sbjct: 325 GNSLSTSTRRLRLIPMDEQADAFCFSWANRLRNLGIATEVDWSHKKPKLSLKDAADQQVS 384

Query: 402 LQVIVGSKFVSDSKVEIKHRL-----TGIREDM 429
              ++G + ++  +  +K        +G ++D+
Sbjct: 385 FVCLLGEQELATKQFIVKDMSLHQSFSGAQQDV 417


>gi|149198613|ref|ZP_01875657.1| seryl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
 gi|149138328|gb|EDM26737.1| seryl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
          Length = 425

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 73/240 (30%), Gaps = 18/240 (7%)

Query: 14  NPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            P+        L +    R   I     G Y W   G +    +     ++    G  E 
Sbjct: 135 APQAHWDLGQNLDILDLPRAAKI--SGSGFYLWKGAGARLERALINFFLDQNTENGYKEA 192

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            VP + +      +G+   + +E+       +  +   PT E  +T+I    I   + LP
Sbjct: 193 WVPFVVNPKAMTGTGQLPKFAEEIY---HAPEDNLYLVPTAEVPVTNIHADEILDAKELP 249

Query: 130 FTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
             +      FR E         G++R  +F   +   F             +      + 
Sbjct: 250 IAYTAYTPCFRREAGAAGKDSRGILRVHQFSKVEMVKFVEPSTSYTEL-EMLLADAEHLL 308

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +LGL    +   SG +G   +     E          +V    +F DF        + +
Sbjct: 309 QQLGLHYRVIELCSGDLGFSAARCYDIEVWAPGTERYLEVSSCSNFEDFQSRRCKIRYKE 368


>gi|305663775|ref|YP_003860063.1| glycyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
 gi|304378344|gb|ADM28183.1| glycyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
          Length = 585

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGII----WPDSVAPFKISLINIKAHDQVCRDA 364
                +     GA R++   +E ++          +P  +AP KI++  +    +   + 
Sbjct: 436 RFIPHVAEPSFGAERLLYIALEYAYTEDEGRIILKFPKRIAPIKIAITPLVDR-EPLTNV 494

Query: 365 CEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
              IY  L +    ++ +  G  IG ++A AD LG P  V V  + +  +   I+ R T 
Sbjct: 495 AVNIYKTLKQYYYSIYIE--GGSIGKKYAYADELGIPYVVTVDYESIERADATIRDRDTR 552

Query: 425 IREDMSLEEVINYA 438
            +  + + E+    
Sbjct: 553 KQIRVPINELTRVL 566



 Score = 51.7 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 27 LRTGMIHQH------SKGIYSWLPLGQKALDNVNAIIREEQNRTG---AIEMSVPTLQSA 77
          +R G I Q         G Y   PLG    +N+  + RE   +      +E+  P +  A
Sbjct: 14 IRRGFIWQSYEIYGGQSGFYDLGPLGVLLKNNIVDLWREYFVKQHQDFVVEIETPIITPA 73

Query: 78 DLWVESGRYDSYGK 91
           ++  SG  +++  
Sbjct: 74 IVFRASGHEENFTD 87


>gi|332234660|ref|XP_003266524.1| PREDICTED: probable histidyl-tRNA synthetase, mitochondrial isoform
           1 [Nomascus leucogenys]
          Length = 506

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 62/479 (12%), Positives = 125/479 (26%), Gaps = 59/479 (12%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQK--------ALDNVNAIIREEQNRTGAI 67
            +A + S    L+    HQ         P G +          + +  ++     R GA 
Sbjct: 38  AEAVLTSQ---LKA---HQEKPNFIIKTPKGTRDLSPQHMVVREKILDLVISCFKRHGAK 91

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            M  P  +  +   E   Y      M  L D+  + +                +      
Sbjct: 92  GMDTPAFELKETLTEK--YGEDSGLMYDLKDQGGELLSLRYDLTVPFARYLAMNKVKKMK 149

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN------------ 175
                   + +    ++ R+      +F +   +   +                      
Sbjct: 150 RYHVGKVWRRESPAIVQGRYREFCQCDFDIAGQFDPMIPDAECLKIMCEILSGLQLGDFL 209

Query: 176 ---KMFVSYLRIFHRLGLKSIPMRAESGPI-------GGDLSHEFIVL-------ADTGE 218
                      +F   G+     RA    I         D+ HE +         AD   
Sbjct: 210 IKVNDRRIVDGMFAVCGVPESKFRAICSSIDKLDKMAWKDVRHEMVAKKGLAPEVADRIG 269

Query: 219 TQVFCS-------KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
             V C        + F D  +       + +  L  + E  T    A     +  L   L
Sbjct: 270 DYVQCHGGVSLVEQMFQDPRLSQNKQALEGLGDLKLLFEYLTLFGIADKISFDLSLARGL 329

Query: 272 PENKRVSARGIEVGHIFYFGTKY----SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
                V    + +      G       S+     + G  G  H           + +   
Sbjct: 330 DYYTGVIYEAVLLQTPIQAGEDPLNVGSVAAGGRYDGLVGMFHPK-GHKVPCVGLSIGVE 388

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE- 386
            I    + +     + V   +  +          ++   K+ A L   G           
Sbjct: 389 RIFYIVEQRMKTKGEKVRTTETQVFVATPQKNFLQER-LKLIAELWDSGIKAEMLYKNNP 447

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           ++ +Q    +  G PL VI+G + + +  ++I+   +     +  E ++     R S +
Sbjct: 448 KLLTQLHYCESTGIPLVVIIGEQELKEGVIKIRSVASREEVAIKRENLVAEIQKRLSES 506


>gi|300214567|gb|ADJ78983.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
           [Lactobacillus salivarius CECT 5713]
          Length = 406

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 61/387 (15%), Positives = 107/387 (27%), Gaps = 18/387 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRY-DSYGKEMLRLADRNDKAMIYG 107
              V    RE   +    EM  P  +S +++   SG   D   KEM    D+ D+ +   
Sbjct: 20  WQYVEEKARELFKKYRYEEMRTPIFESFEVFSRTSGETSDIVTKEMYDFYDKGDRHITLR 79

Query: 108 PTHEEVMTDIFRSHIK--SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
           P     +   F  +         PF  Y +   FR E        R REF      +F +
Sbjct: 80  PEGTAGVVRSFVENKLYGPEVQKPFKTYYMGPMFRYERPQSG---RLREFHQIGVEAFGV 136

Query: 166 TPEGSKHSYNKM---------FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
                      M           S     + LG            I      E  +  D+
Sbjct: 137 DNPTLDVEVMAMAVDLLKSFGLNSLRVAVNTLGDLETRNNYRQALIDYLEPFEAELSDDS 196

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPYAATSDVHNEKLFDSLPENK 275
            E         +D     +     +  S+ + + E     +     + N+   + + ++ 
Sbjct: 197 KERLHKNPLRVLDSKDEKDKEIVANAPSILDYLTEDAQKHFETVKSLLNDLGIEYVIDSN 256

Query: 276 RVSARGIEVGHIFY-FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
            V         IF       +     T   A G    +     G     V   +      
Sbjct: 257 MVRGLDYYNHTIFEIMSDSKAFNGKWTTVCAGGHYSGLVEQLGGPQTPGVGFGLGVERLL 316

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                  D++       + +     V   A  K+   L   G     D +  +   QF  
Sbjct: 317 LILDAEEDALPIENPLDVYVVGIGDVTNAATLKLVQNLRHQGFTADRDYLNRKPKGQFKS 376

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           A+ L     + +G   + + +  +K  
Sbjct: 377 ANRLNARFTLTIGETELQEQEANLKFM 403


>gi|255569072|ref|XP_002525505.1| histidyl-tRNA synthetase, putative [Ricinus communis]
 gi|223535184|gb|EEF36863.1| histidyl-tRNA synthetase, putative [Ricinus communis]
          Length = 886

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/436 (11%), Positives = 120/436 (27%), Gaps = 41/436 (9%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           LP G +          +   +II E   R GA  +  P  +  +  +  G+Y    K + 
Sbjct: 450 LPKGTRDFAKEQMAIRERAFSIITEVFKRHGATALDTPAFELRETLM--GKYGEDSKLIY 507

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
            LAD+  +                  +  +           +     +   R+      +
Sbjct: 508 DLADQGGELCSLRYDLTVPFARYVAMNGITSFKRYQIAKVYRRDNPSK--GRYREFYQCD 565

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFI-VL 213
           F +   Y              ++        +++ L    +      I G    +F  + 
Sbjct: 566 FDIAGQYEEMGPDFEIVKILTELLDELNIGEYKVKLNHRKLLDGMLEICGVPPEKFRTIC 625

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY----------------- 256
           +   +             +  +    +    + + V++   P                  
Sbjct: 626 SSVDKLDKQSFSQVKKEMVEEKGLSVETADKIGTFVKESGHPKELLSKLKQEGSEFLGNA 685

Query: 257 -AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD-------GK 308
            +  +    E LFD+L ++K +     ++           +   A FKG         G 
Sbjct: 686 SSRRALDELEILFDALEKSKCIDKVAFDLSLARGLDYYTGVIFEAVFKGKTQVGSIAAGG 745

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA--HDQVCRDACE 366
            +   +G +G   +  V   +        +    +          + +   D+       
Sbjct: 746 RYDNLIGMFGTKQVPAVGVSLGIERVFTIMEEDQNQTSRPTETQVLLSILGDKSKLPLAA 805

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           ++   L        +  +  +       A     P+ V+VG K +    V+IK+  T + 
Sbjct: 806 ELAGELWNAKLKAEY-TVSTRFSKHIDRAKESKIPIMVLVGDKELEKGIVKIKNLETTVE 864

Query: 427 EDMSLEEVINYASHRF 442
           +++     +       
Sbjct: 865 KEVPRSNFVEELKLEL 880


>gi|186685474|ref|YP_001868670.1| histidyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
 gi|229558699|sp|B2J5J5|SYH_NOSP7 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|186467926|gb|ACC83727.1| histidyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
          Length = 470

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQV 404
               ++ +   + +      K+   L + G +V   +D     +G QF +AD  G    V
Sbjct: 375 TPAQVMVVNMQEDLMPTY-LKVSQHLRQAGINVITNFDKRP--LGKQFQLADKQGIQFCV 431

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           I+GS+  +  K  +K   +G + ++ L  +      R S
Sbjct: 432 IIGSEEAAAQKSSLKDLKSGEQVEVLLVNLAEEVKRRLS 470



 Score = 40.9 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 18/48 (37%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           G   +LP  ++    +  IIR      G   +  P ++  ++    G
Sbjct: 13 SGFPEFLPSEKRLELYLLDIIRRVFESYGFTPIETPAVERLEVLQAKG 60


>gi|313205057|ref|YP_004043714.1| histidyL-tRNA synthetase [Paludibacter propionicigenes WB4]
 gi|312444373|gb|ADQ80729.1| histidyl-tRNA synthetase [Paludibacter propionicigenes WB4]
          Length = 451

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 2/156 (1%)

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
             G IF          S T  G    +     G  G+  + +             +    
Sbjct: 298 YTGAIFEVKALDVEMGSIT-GGGRYDNLTGVFGMEGVSGVGISFGADRIYDVLNQLNLYP 356

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
             +  +  ++ +   ++     C    + L   G +        ++  Q + AD    P 
Sbjct: 357 ETSQEQTRILFVSFGEKELM-YCLPWLSALRNKGVNAEIYPEPAKMKKQMSYADNKRIPF 415

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             IVG   + ++KV +K+  TG +   SLEE++   
Sbjct: 416 VAIVGETEMKENKVMLKNMKTGEQSLASLEELVELV 451


>gi|21672557|ref|NP_660624.1| histidyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25009352|sp|Q8K9P3|SYH_BUCAP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|21623183|gb|AAM67835.1| histidyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 428

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/425 (12%), Positives = 121/425 (28%), Gaps = 31/425 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G++ +LP   K    +  II++        E+ +P L+   ++  + G   D   KEM  
Sbjct: 10  GMHDYLPEELKIWKKIENIIQKILTSYCYEEIRLPILEKTKIFQRAIGNITDVVEKEMYS 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+   ++   P            +   ++     +Y     FR E   +    R R+F
Sbjct: 70  FKDKKGNSLTLRPEGTVGCVRAIIENNLLFQKKQRFWYL-GPMFRYERPQKG---RYRQF 125

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFV----------SYLRIFHRLGLKSIPMRAESGPIGGD 205
                  F L           +                  + +G K   ++ +   +   
Sbjct: 126 YQLGVEVFGLNTPDIDLEIILLISRLWKCLGINLHIKLEINSIGSKLDRIKYQKELVFFL 185

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-PYAATSDVHN 264
             ++ I+  D+ +         +D               L + +       + +  ++ +
Sbjct: 186 EKYKNILDEDSKKRLYTNPFRILDSKNDMMQKILKKAPLLKNYINTSAINHFNSLCNMMD 245

Query: 265 EKLFDSLPENKRVSARGIEVGHIF-----YFGTKYSLPMSATFKG--ADGKDHYVQMGSY 317
                 +     V         +F       G++ ++     +     +   +      +
Sbjct: 246 SYGIKYIHNQNLVRGLDYYNSTVFEWKIDQIGSQNTICAGGRYDSLVQELGGNKTSAIGF 305

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
            IG  R     +        II           +   + +        E+I     K+  
Sbjct: 306 AIGIER-----LVLLIKSLNIISCKEEDINIYIIFIGELNKIYAISLSEEIRNIYPKLKI 360

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
             F D M   +  +   A      + +++G+  +  +   +K    G     S  E+I  
Sbjct: 361 --FVDFMTCSLSKKIKNAVDSLAHIAILIGANEIKKNCFLLKDLKRGREYFFSKSELILK 418

Query: 438 ASHRF 442
               F
Sbjct: 419 IKKIF 423


>gi|78485113|ref|YP_391038.1| seryl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
 gi|123755256|sp|Q31HK9|SYS_THICR RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78363399|gb|ABB41364.1| seryl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
          Length = 428

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 16/209 (7%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-----LADRND 101
            K    +   + +     G  E+ VP L + D    +G+   +  ++ +       D +D
Sbjct: 170 AKLQRALTQFMLDSHTDAGYEEVYVPFLVNQDSLHGTGQLPKFEADLYKIDKHEEHDTSD 229

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLM 157
           + +   PT E  +T++FR  I     LP  F      FR E     R   G++R  +F  
Sbjct: 230 RDLYLIPTAEVPVTNLFRDEIIDEDTLPLKFTAHTPCFRSEAGSYGRDTKGLIRQHQFEK 289

Query: 158 KDA-YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
            +              +   +      I  +L L    M   +G IG   +     E  +
Sbjct: 290 VEMVQIVHPDQSY--EALESLTQQAESILQKLELPYRVMSLCTGDIGFSAAKTYDLEVWL 347

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDD 241
                  ++    +F DF        F  
Sbjct: 348 PGQQAYREISSCSNFEDFQARRLKARFRK 376


>gi|197101367|ref|NP_001126785.1| probable histidyl-tRNA synthetase, mitochondrial precursor [Pongo
           abelii]
 gi|75061640|sp|Q5R5E5|SYHM_PONAB RecName: Full=Probable histidyl-tRNA synthetase, mitochondrial;
           AltName: Full=Histidine--tRNA ligase; Short=HisRS;
           AltName: Full=Histidine--tRNA ligase-like; Flags:
           Precursor
 gi|55732644|emb|CAH93021.1| hypothetical protein [Pongo abelii]
          Length = 506

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 72/484 (14%), Positives = 131/484 (27%), Gaps = 69/484 (14%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQK--------ALDNVNAIIREEQNRTGAI 67
            +A + S    L+    HQ         P G +          + +  ++     R GA 
Sbjct: 38  AEAVLTSQ---LKA---HQEKPNFIIKTPKGTRDLSPQHMVVREKILDLVISCFKRHGAK 91

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            M  P  +  +   E   Y      M  L D+  + +                     + 
Sbjct: 92  GMDTPAFELKETLTEK--YGEDSGLMYDLKDQGGELLSLRYDLTVPFARYLAM----NKV 145

Query: 128 LPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL-TPEGSKHSYNKMFVSYLR--- 183
                Y +   +R E  P     R REF   D        P        K+    L    
Sbjct: 146 KKMKRYHVGKVWRRE-SPTIVQGRYREFCQCDFDIAGQFDPMIPDAECLKIMCEILSGLQ 204

Query: 184 ----------------IFHRLGLKSIPMRAESGPI-------GGDLSHEFIVL------- 213
                           +F   G+     RA    I         D+ HE +V        
Sbjct: 205 LGDFLIKVNDRRIVDGMFAVCGVPESKFRAICSSIDKLDKMAWKDVRHEMVVKKGLAPEV 264

Query: 214 ADTGETQVFCS-------KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           AD     V C        + F D  +       + +  L  + E  T    A     +  
Sbjct: 265 ADRIGDYVQCHGGVSLVEQMFQDPRLSQNKQALEGLGDLKLLFEYLTLFGIADKISFDLS 324

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKY----SLPMSATFKGADGKDHYVQMGSYGIGAM 322
           L   L     V    + +      G +     S+     + G  G     +        +
Sbjct: 325 LARGLDYYTGVIYEAVLLQTPTQAGEEPLNVGSVAAGGRYDGLVG-MFDPKGHKVPCVGL 383

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            +    I    + +     + V   +  +          ++   K+ A L   G      
Sbjct: 384 SIGVERIFYIVEQRMKTKGEKVRTTETQVFVATPQKNFLQER-LKLIAELWNSGIKAEML 442

Query: 383 DMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                ++ +Q    +  G PL VI+G + + +  ++I+   +     +  E ++     R
Sbjct: 443 YKNNPKLLTQLHYCESTGIPLVVIIGEQELKEGVIKIRSVASREEVAIKRENLVAEIQKR 502

Query: 442 FSNN 445
            S +
Sbjct: 503 LSES 506


>gi|297748673|gb|ADI51219.1| Histidyl-tRNA synthetase [Chlamydia trachomatis D-EC]
 gi|297749553|gb|ADI52231.1| Histidyl-tRNA synthetase [Chlamydia trachomatis D-LC]
          Length = 436

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/393 (13%), Positives = 116/393 (29%), Gaps = 15/393 (3%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRY-DSYGKEMLRLADRNDKAMIYG 107
               V        N  G  E+  P  +  + ++  G Y D   KE+    D+  +++   
Sbjct: 36  LWKRVEHAAHRICNLYGFDEIRTPVFEKTETFLRVGEYSDIVKKEVYTFLDKKRRSLTLR 95

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P     +      H    R     FY I   FR E +      +  +F ++         
Sbjct: 96  PEGTAAVVRALLDHSADMRK-DNKFYYILPMFRYERQQSGRYRQHHQFGLEAIGVRHPLR 154

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD------TGETQV 221
           +    S    F + + + H     +     ++     +   EF           + E   
Sbjct: 155 DAEVLSLLWDFYAAVGLQHMQIHVNFLGGQKTRARYDEALREFFRKDLDRLSPLSQERYH 214

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG 281
                 +D   P +    +   S+   ++     Y        + L  S   N R+  RG
Sbjct: 215 ANLLRILDSKEPEDQEFIEKAPSILDYIDDRDLSYFDAVLAQLKALGISFAINPRL-VRG 273

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           ++      F    ++    ++    G  +   +   G  +M      +      + ++  
Sbjct: 274 LDYYTDLVF-EAVTVVGEHSYALGGGGRYDELVAQSGGPSMPAFGFGVGLERVIQTLLEQ 332

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            +        + +   D+     C     RL  +G     D   ++       A      
Sbjct: 333 GNSLSTSTRRLRLIPMDEQADAFCFSWANRLRNLGIATEVDWSHKKPKLSLKDAADQQVS 392

Query: 402 LQVIVGSKFVSDSKVEIKHRL-----TGIREDM 429
              ++G + ++  +  +K        +G ++D+
Sbjct: 393 FVCLLGEQELATKQFIVKDMSLHQSFSGAQQDV 425


>gi|260890442|ref|ZP_05901705.1| histidine--tRNA ligase [Leptotrichia hofstadii F0254]
 gi|260860062|gb|EEX74562.1| histidine--tRNA ligase [Leptotrichia hofstadii F0254]
          Length = 230

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 75/213 (35%), Gaps = 7/213 (3%)

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-KLFDSLPENKRVSARGIEVGH 286
           +D     +   F +   L   +++ +  Y   +  + E    + +  +K V         
Sbjct: 24  LDSKDKGDQEQFVNAPKLYDYLDEESKNYFEDTKKYLELMNINYVVNDKLVRGLDYYSDT 83

Query: 287 IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           +F   +   L   AT                 +G  +V      +  +   ++  +++  
Sbjct: 84  VFEIKSDK-LGSQATVL----AGGRYDRLLEILGNAKVPGIGFAAGMERIAMLMDENLIA 138

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
            K + I +   D+  ++   K+   L K    V +D   +  G+Q   A+       +I+
Sbjct: 139 KKENKIYVIYFDET-KEYFVKVIEELRKNEIKVNFDYNPKSFGAQMKKANRENADYVLIL 197

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           G     ++ V +K   TG +E   LE+VI    
Sbjct: 198 GEDEQKENVVTMKKFSTGEQEKYKLEDVIEILK 230


>gi|219848336|ref|YP_002462769.1| seryl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
 gi|254783016|sp|B8G8S1|SYS_CHLAD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|219542595|gb|ACL24333.1| seryl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
          Length = 426

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 49/167 (29%), Gaps = 8/167 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
            Y     G +    V   + +   R G  E+  P +    +   SG+   +   + R  +
Sbjct: 162 FYVMRGAGARLQRAVIQWLLDLHLRQGYQEIYTPFVVKESVLWASGQLPKFRDNLYRDEE 221

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                +   PT E  +T ++   I     LP         FR E     R   G+ R  +
Sbjct: 222 SG---LWLVPTAEVPLTGLYADEILEASQLPIYHAAYTPCFRKEQLSAGRDVRGIKRGHQ 278

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
           F   + Y F    E  +                LGL        +  
Sbjct: 279 FDKVEMYMFVKPEESYQALEKLRRD-AEECARLLGLPFRTKLLCTAD 324


>gi|170078923|ref|YP_001735561.1| seryl-tRNA synthetase [Synechococcus sp. PCC 7002]
 gi|238689047|sp|B1XJM0|SYS_SYNP2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|169886592|gb|ACB00306.1| seryl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 427

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 73/207 (35%), Gaps = 12/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + ++Q   G +E+  P L ++D    +G+   + +E  R AD     + 
Sbjct: 176 GAALERALINFMLDQQIAAGYVEVMPPVLINSDSLTGTGQLPKFAEESFRCAD---DDLW 232

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I    NLP         FR E     +   G++R  +F   +  
Sbjct: 233 LTPTAEVPVTNLYRYEILEAENLPIYHCAYTPCFRREAGSYGKDTRGLIRLHQFNKVELV 292

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F      +     K+  +   I   L L    +   SG +G         E  + +   
Sbjct: 293 KFVHPETSAAEH-EKLVANAEAILQALKLPYRVLELCSGDLGFSAGKCYDLEVWLPSADT 351

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +F DF        F +   
Sbjct: 352 YREISSCSNFYDFQARRAGIRFKEAGK 378


>gi|229097777|ref|ZP_04228732.1| Histidyl-tRNA synthetase 1 [Bacillus cereus Rock3-29]
 gi|228685722|gb|EEL39645.1| Histidyl-tRNA synthetase 1 [Bacillus cereus Rock3-29]
          Length = 428

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 60/431 (13%), Positives = 127/431 (29%), Gaps = 49/431 (11%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L ++
Sbjct: 14  DYLPEEQVLRNKIKKACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQNQ 73

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 74  GKRELALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 128

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L  + I+ 
Sbjct: 129 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILQAINIPTELMSDVILS 188

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHN 264
            D  E          +       +      NT    +  ++    E +            
Sbjct: 189 LDKIEKIGIDGVRKDILGRGITEEMADTICNTVLSCLKLTIADFKEAFNNQLVTDGINEL 248

Query: 265 EKLFDSLP----------ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
           ++L   L                    +  G ++    K       +  G+ G+   +  
Sbjct: 249 QQLQQYLIALRINENAIFNPFLARGLTMYTGTVYEIFLK--DGSITSSIGSGGRYDNIIG 306

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
              G         +          +      P    L  I    ++    C +I  +L  
Sbjct: 307 AFRGDNMNYPTVGISFGLDVIYTALSQKETKPSTADLFIIPLGTELQ---CLQIAQQLRS 363

Query: 375 ---VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
              +  ++         G +   A    +    P  +I+G + +S   V +++   G   
Sbjct: 364 TTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSAETVMLRNMKEGSGV 417

Query: 428 DMSLEEVINYA 438
            + L  + NY 
Sbjct: 418 KVPLASLSNYL 428


>gi|115652043|ref|XP_787474.2| PREDICTED: similar to histidyl-tRNA synthetase, partial
           [Strongylocentrotus purpuratus]
          Length = 494

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/414 (12%), Positives = 116/414 (28%), Gaps = 45/414 (10%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
            + + +KG   + P      + V  +I +   R GA  +  P  +  +    +G+Y    
Sbjct: 62  YVLKTAKGTRDYTPRQMAIREGVFKVIIDTFKRHGAETIDTPVFELKETL--TGKYGEDS 119

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           K +  L D+  + +                +  +             K      P     
Sbjct: 120 KLIYDLKDQGGELLSLRYDLTVPFARYVAMNKIAKIK-----RYHIAKVYRRDNPAMTRG 174

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           R REF   D             +     V  +    +LG     ++     I   +    
Sbjct: 175 RYREFYQCDFDIAGQYDAMIPDAECVKIVHEILSNLKLG--DFVIKVNHRQILDGMFEAC 232

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS---DVHNEKL 267
            V  D   T                  +  D   ++         +   +   ++ ++ L
Sbjct: 233 GVPDDKFRTACSAVDKLDKTFWEDVRAEMVDEKGIDPAAADRIGFFVQQNGGPELVDKLL 292

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            +S  ++ + + +G+E           ++ +   +    G    V      IG  RV + 
Sbjct: 293 TESSLKDNKAAKQGLE-----------AMRLLLQYCEILGVLDKVPCVGVSIGIERVFSI 341

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +   +     ++          S            +   K+  +L   G           
Sbjct: 342 MEAKAQLSSNVVRTIETQVLVASAQP------NMLEERMKLCNQLWSAGIKAE------- 388

Query: 388 IGSQ--------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           +  +        +  A+    PL  ++G + + D  + +++  T   E +   E
Sbjct: 389 MSYKKNPKMLDQYQQAEKYSIPLLAVIGEQELKDGVITLRNSATRE-EGVPFAE 441


>gi|254421409|ref|ZP_05035127.1| seryl-tRNA synthetase [Synechococcus sp. PCC 7335]
 gi|196188898|gb|EDX83862.1| seryl-tRNA synthetase [Synechococcus sp. PCC 7335]
          Length = 449

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 70/193 (36%), Gaps = 12/193 (6%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G     ++ + + +   R G  E+  P L +++    SG+   + ++  +    +   + 
Sbjct: 197 GAALERSLISFMLDRHTRAGYTEILPPILVNSESMQGSGQLPKFAEDGFKC---DRDDLW 253

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  + +   LP  +      FR E     R   G++R  +F   + Y
Sbjct: 254 LTPTAEVPLTNLHRDEVLASDELPLNYCAYTPCFRREAGSYGRDTRGLIRLHQFNKVEMY 313

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F                    I  +L L    +   SG +G + +     E  + +   
Sbjct: 314 KFVHPETSFDELEKLTAD-AEDILQQLKLPYRVIELCSGDLGFNATKTYDLEVWLPSAGK 372

Query: 218 ETQVFCSKDFMDF 230
             ++    + +DF
Sbjct: 373 YREISSCSNCVDF 385


>gi|149726815|ref|XP_001504200.1| PREDICTED: similar to histidyl-tRNA synthetase 2 [Equus caballus]
          Length = 506

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/473 (10%), Positives = 128/473 (27%), Gaps = 47/473 (9%)

Query: 16  RDAEIAS----HKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
            +A + S    H+   ++  I +  KG     P      + +  ++     R GA  +  
Sbjct: 38  AEAVLVSQLKPHQ--EKSNFIIKTPKGTRDLTPQQMVVREKILDLVVSCFKRHGAKGLDT 95

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P  +  ++  E   Y      +  L D+  + +                +          
Sbjct: 96  PAFELKEVLTEK--YGEDSGLIYDLQDQGGELLSLRYDLTVPFARYLAMNKVKKMKRYHV 153

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
               + +    ++ R+      +F +   +   +          ++          + + 
Sbjct: 154 GKVWRRESPTVVQGRYREFCQCDFDIAGQFDPMIPDAECLKIMCEILSGLQLGDFLIKVN 213

Query: 192 SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
              +      + G    +F  +  + +     S   +   + ++     ++        Q
Sbjct: 214 DRRILDGMFAVCGVPESKFHTICSSIDKLGKMSWKDVRHEMVAKKGLAPEVADRIGDYVQ 273

Query: 252 WTAPYAATSDV-------HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                +    +        N++  + L + K +       G         SL     +  
Sbjct: 274 CHGGVSLVEQMFQDPRLSQNKQALEGLGDLKLLFEYVTLFGIAEKISFDLSLARGLDYYT 333

Query: 305 ADGKDHYVQMGSYGIGAMRVVAAVIE--SSHDGKGIIWPDSVAPFKISLINIKAH----- 357
               +  +           +    +     +DG   ++           ++I        
Sbjct: 334 GVVYEAVLLPTPAQAEEEPLNVGSVAAGGRYDGLVGMFDPKGHKVPCVGLSIGVERIFSI 393

Query: 358 -DQVCRDACEKIY-----------------------ARLSKVGCDVFWDDMGE-QIGSQF 392
            +Q  +   EKI                        A L   G           ++ +Q 
Sbjct: 394 VEQKMKTFGEKIRTTETQVFVASPQKNFLQERLKLIAELWDAGIKAELLYKNNPKLLTQL 453

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              + +G PL VIVG + + +  ++++   +     +  E ++     R S +
Sbjct: 454 HYCENMGIPLVVIVGEQELKEGVIKLRSVASREEVAIKRENLVAEIQKRLSES 506


>gi|108799252|ref|YP_639449.1| histidyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119868368|ref|YP_938320.1| histidyl-tRNA synthetase [Mycobacterium sp. KMS]
 gi|126434910|ref|YP_001070601.1| histidyl-tRNA synthetase [Mycobacterium sp. JLS]
 gi|108769671|gb|ABG08393.1| histidyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119694457|gb|ABL91530.1| histidyl-tRNA synthetase [Mycobacterium sp. KMS]
 gi|126234710|gb|ABN98110.1| histidyl-tRNA synthetase [Mycobacterium sp. JLS]
          Length = 418

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 66/421 (15%), Positives = 123/421 (29%), Gaps = 30/421 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+  +LP        V   +     R G  ++ +P  +   L+        D   KEM  
Sbjct: 11  GVPDYLPPESAQFVAVRDGLLSAARRAGYGDVELPIFEDTALFARGVGESTDVVSKEMYT 70

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
            ADR D+++   P     +      H      LP         FR E RP+ G  R  + 
Sbjct: 71  FADRGDRSVTLRPEGTAGVIRAVIQHRLDRGALPVKLCYAGPFFRYE-RPQAGRYRQLQ- 128

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVL 213
            +         P             +  +        +    +    P   +L  +F+  
Sbjct: 129 QVGIEAIGVDDPALDAEVIAVADAGFRSLGLDGFRLELTSLGDDTCRPQYRELLQDFLFK 188

Query: 214 ADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF 268
            D  E      ++   +   D          D  + L+ + +   A + A          
Sbjct: 189 LDLDEETRRRAEINPLRVLDDKRPHVREMTADAPVMLDHLSDSAKAHFEAVQTHLQALGV 248

Query: 269 DSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGK--DHYVQMGSYGIGA 321
             +   + V          F       G +  +     + G   +     V    +G+G 
Sbjct: 249 PYVINPRMVRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMRRLGGQDVSGIGFGLGV 308

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            R + A+              +    +I +  I +      D    + A L + G     
Sbjct: 309 DRTLLALRAEGKT--------AGQVARIDVYCIPSGPDAKVDIAV-LAADLRRAGVRADV 359

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                 + +    AD  G  + +I     V+   V++K   TG + +M+ E V+     R
Sbjct: 360 AYGDRSLKAALKAADRTGASIALIADP-GVA--TVKVKDLGTGDQIEMAREAVVAEVVSR 416

Query: 442 F 442
            
Sbjct: 417 L 417


>gi|66821749|ref|XP_644303.1| histidine-tRNA ligase [Dictyostelium discoideum AX4]
 gi|74926756|sp|Q86AS6|SYHC_DICDI RecName: Full=Histidyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|60472019|gb|EAL69972.1| histidine-tRNA ligase [Dictyostelium discoideum AX4]
          Length = 481

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 59/441 (13%), Positives = 124/441 (28%), Gaps = 46/441 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            + P      + V   I++   R GA+ +  P  +  +    +G+Y    K +  L D+ 
Sbjct: 47  DYNPRQMTIREQVFDGIKQVFKRHGAVTIETPVFELKETL--TGKYGEDSKLIYDLQDQG 104

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            +                         L    Y I   +R +  P     R REF   D 
Sbjct: 105 GEICSLRYDLTVPFARYVAM----NGVLNIKRYHIARVYRRD-NPIMTKGRFREFYQCDF 159

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
                          +  V    I  ++ +    ++     +   +     V AD     
Sbjct: 160 DIAGTYDLMVPD--AECLVMICEILEQVKVGDFQIKLNHRKLLDAIFAICGVPADKFRAI 217

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSD----VHNEKLFDSLPENK 275
                     P      +  ++ +L+  V ++     +   +    + + +       NK
Sbjct: 218 CSAVDKLDKSPWEEVRKEMVEVKALDGAVADKIEKFVSLKDEPIKLLQHLRATGMCDGNK 277

Query: 276 RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY----GIGAMRVVAAVIES 331
             +    ++  +F +   + +     F  +  +      G        G  RV +     
Sbjct: 278 DATEALSQLETLFGYLECFGVTQHILFDLSLARGLDYYTGIIYEAVLTGQDRVGSIAAGG 337

Query: 332 SHDGKGIIWPDSVAPFKISLINI-----------KAHDQVCRDACEK------------- 367
            +DG   ++     P     I I           K  ++  R+   +             
Sbjct: 338 RYDGLVGMYGKKDVPAVGFSIGIERIFTILEDEYKKENKKIRENATQVFVVQMEKDLIKE 397

Query: 368 ---IYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              I + L K G +  +      ++ +Q   AD    PL +I+G   V  + + +K    
Sbjct: 398 RLAIVSELWKAGINAEFSYKVNPKLPAQLNTADESNIPLIIIIGKSEVETNSLSVKTMHD 457

Query: 424 GIREDMSLEEVINYASHRFSN 444
             +  +             S 
Sbjct: 458 RKQVSIERSNFTVKIKEILST 478


>gi|228946954|ref|ZP_04109251.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228812686|gb|EEM59010.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 428

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 67/428 (15%), Positives = 133/428 (31%), Gaps = 43/428 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 14  DYLPEEQVLRNKIKRACEDTFERYGCKSLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 73

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             +A+            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 74  GKRALALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 128

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 129 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILQAINIPTELTSDVILS 188

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE 273
            D  E ++  +    D      + +  D I    +     +        +N  + D + E
Sbjct: 189 LDKIE-KIGINGVRKDVLERGISEEMADTICNTILSCLQLSMADFKEAFNNPLVADGVNE 247

Query: 274 NKR----VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
            ++    + A GI    IF       L M                 S G G  R    + 
Sbjct: 248 LQQLQQFIIALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGG-RYDNIIG 306

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLSK--- 374
               D              +    +   + +   A            C +I  +L     
Sbjct: 307 AFRGDDMSYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGTELQCLQIAQQLRSTTS 366

Query: 375 VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           +  ++         G +   A    +    P  +I+G + +    V +++   G    + 
Sbjct: 367 LKIELEL------AGRKLKRALNYANKENIPYVLIIGEEEICTETVMLRNMKEGSEVKVP 420

Query: 431 LEEVINYA 438
           L  + NY 
Sbjct: 421 LSSLSNYL 428


>gi|320530062|ref|ZP_08031132.1| seryl-tRNA synthetase [Selenomonas artemidis F0399]
 gi|320137495|gb|EFW29407.1| seryl-tRNA synthetase [Selenomonas artemidis F0399]
          Length = 437

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 68/199 (34%), Gaps = 13/199 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +        + +    + G  EM  P + +    V +G+   + ++M +L   
Sbjct: 178 FYKGLGARLERACINFMMDLHAEKHGYTEMLAPYIVNESSMVGTGQLPKFAEDMFKLE-- 235

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E   T+  R  I     LP  +      FR E     R   G++R  +F
Sbjct: 236 -GLDYYLVPTAEVPTTNYHRDEILDAAQLPEYYTSYTACFRAEAGSAGRDTRGLIRQHQF 294

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
             K      +TPE S      M  +   +   L L    ++  +G +    +     E  
Sbjct: 295 N-KVELIKFVTPETSWDELESMVEAAEDVLRTLELPYRVIQLCTGDMSFTSAKTYDLEVW 353

Query: 212 VLADTGETQVFCSKDFMDF 230
           + A     ++    +  D+
Sbjct: 354 MPAQNKYREISSCSNCTDY 372


>gi|302550150|ref|ZP_07302492.1| histidyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302467768|gb|EFL30861.1| histidyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 420

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/396 (12%), Positives = 107/396 (27%), Gaps = 22/396 (5%)

Query: 61  QNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
              +G   +  P  ++ +L+        D   KEM     +    +   P     +    
Sbjct: 32  LRNSGYGYIETPGFENVELFARGVGESTDIVTKEMYAFETKGGDRLALRPEGTASVLRAA 91

Query: 119 RSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDLTPEGSKHSYNK 176
                    NLP   +     +R E   +    R R F    A       P         
Sbjct: 92  LEANLHKAGNLPVKLWYSGSYYRYERPQKG---RYRHFSQVGAEAIGAEDPALDAELLIL 148

Query: 177 MFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
              +Y  +        +    +S   P+      +F+   D  E  +  ++      +  
Sbjct: 149 ADQAYRSLGLSDFRILLNSLGDSECRPVYRTALQDFLRGLDLDEDTLRRAEINPLRVLDD 208

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFG 291
           +       +    ++  +             +L  +     E+     RG++      F 
Sbjct: 209 KRESVQKQLGEAPLLRDYLCDACKAYHEEVRELITAAGVAFEDDPKLVRGLDYYTRTTFE 268

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
             +    S +  G  G+   +     G     V  A+               +     + 
Sbjct: 269 FVHDGLGSQSAVGGGGRYDGLSEMIGGPALPSVGWALGVDRTVLALEAEGVELELPATTS 328

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ-----FAVADLLGFPLQVIV 406
           +      +  R         L K G    +       G +        A+  G    V+ 
Sbjct: 329 VFAVPLGEEARRVLFAKVTELRKNGIAADF-----SYGGKGLKGAMKNANRSGARYTVVA 383

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G + +++  V++K   +G +  + + E++     R 
Sbjct: 384 GERDLAEGVVQLKDMESGEQTAVGVNEIVAELEARL 419


>gi|228986403|ref|ZP_04146539.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773224|gb|EEM21654.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 426

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 60/429 (13%), Positives = 130/429 (30%), Gaps = 45/429 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 12  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 71

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 72  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 126

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 127 VDIVGVESVMAEAELMSMAFELFQTLNLEVTIQYNNRKLLNGILQAINIPTELTSDVILS 186

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPY---AATSD 261
            D  E          V       +      NT    +  ++    E +  P         
Sbjct: 187 LDKIEKIGIDGVRKDVLERGITEEMADTICNTVLSCLKLTIADFKEAFNNPLVADGVNEL 246

Query: 262 VHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++   +L  N+         RG+ +     +          +  G+ G+   +    
Sbjct: 247 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAF 306

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL---S 373
            G         +          +           +  I    ++    C +I  +L   +
Sbjct: 307 RGDNMHYPTVGISFGLDVIYTALSQKETVSSTADVFIIPLRTEIQ---CLQIAQQLCSTT 363

Query: 374 KVGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +  ++         G +   A    +    P  +I+G + +S     +++   G    +
Sbjct: 364 SLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTETAMLRNMKEGSEVKV 417

Query: 430 SLEEVINYA 438
            L  + NY 
Sbjct: 418 PLSSLSNYL 426


>gi|156364444|ref|XP_001626358.1| predicted protein [Nematostella vectensis]
 gi|156213231|gb|EDO34258.1| predicted protein [Nematostella vectensis]
          Length = 232

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 376 GCDVFWDDMGE--QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
           G     D   E    G +F   +L G P+++ VG + V ++K  +  R    +  +  E 
Sbjct: 155 GIRAKGDF-NEHHSPGWKFNHWELKGVPIRIEVGPRDVKNNKFVLVRRHDRSKHTIQHEG 213

Query: 434 VINYASHRFS 443
            +        
Sbjct: 214 FVGSIQETLE 223


>gi|308809683|ref|XP_003082151.1| histidyl-tRNA synthetase, putative (ISS) [Ostreococcus tauri]
 gi|116060618|emb|CAL55954.1| histidyl-tRNA synthetase, putative (ISS) [Ostreococcus tauri]
          Length = 518

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 64/446 (14%), Positives = 123/446 (27%), Gaps = 42/446 (9%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           +   G   W P   +    +    R+   RTG  E   P L+  +L+      +    +M
Sbjct: 66  EACSGTRDWYPEEFRLQRWLFEKFRQTATRTGFEEYDAPVLERQELYKRK-AGEEITSQM 124

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
               D++   +   P     +  +      S   LP  ++ I   +R E   R       
Sbjct: 125 YAFVDQDGVDVTLRPEMTPTLARMVLGRAAS-MMLPLKWFSIPQCWRFETTQRGRKREHY 183

Query: 154 EFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMR--AESGPIGGDLSHEF 210
           ++ M       ++      ++  + F S       +G+K    +  A      G  + +F
Sbjct: 184 QWNMDIIGCKSISAETELLYAVCEFFRSIGITSADVGIKVNSRKVMASVLDSYGITAEKF 243

Query: 211 ------IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN 264
                 +   D    +    +      +P E  +          V++  A      D   
Sbjct: 244 APVCVIMDKLDKIGDEAVIEELVNAQNLPKETAEKIVACLACKNVDELAALCGEGVDQTG 303

Query: 265 EKLFDSL--------PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
            +    L          +  +    +  G  +Y G  +     A    A           
Sbjct: 304 IEELKRLFSLADDYGFGDWLIFDASVVRGLAYYTGIVFEGFDRAGELRAICGGGRYDKLL 363

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK----ISLINIKAHDQVCRDACEKIYARL 372
              GAM  V A      D   +                   + A ++  +    K  A +
Sbjct: 364 SLYGAMSEVPACGFGFGDCVIVELLKEKGLVPVLPKSIEFVVAAFNEGMQGKAMKAAALI 423

Query: 373 SKVGCDV--FWDDMGEQIGSQFAV----ADLLGFPLQVIVGSKFVSDSKVEIKHRL---- 422
              G DV    +        + A     A+ +G    V V  +   +  V IK       
Sbjct: 424 RSGGADVDMLLE-----PKKKVANTFDYANRIGARYIVFVAPQEWENGMVRIKDLRAEYT 478

Query: 423 ---TGIREDMSLEEVINYASHRFSNN 445
                 + D+ L ++    S     +
Sbjct: 479 DKEDEKQLDVKLSDL-GRVSELLREH 503


>gi|8671766|gb|AAF78372.1|AC069551_5 T10O22.10 [Arabidopsis thaliana]
          Length = 270

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 58/157 (36%), Gaps = 12/157 (7%)

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F+   ++ L  SA        +  V +    + ++  + A++   + GK   W       
Sbjct: 124 FHLRDRFKLEYSAE--NETMIERSVLIHRAVLSSVERLFAILLEQYKGKFPFW------L 175

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
                 + +  +  R   +K+  ++ + G  V  D     +  +   A +  +   ++VG
Sbjct: 176 SPRQAIVCSVSEDYRSYADKVRDQIHEAGYYVDVDTTDRNVSDKVQEAQVAHYNYILVVG 235

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     +V +  R     E MS+E + +    + +N
Sbjct: 236 DEEARTGQVTVWLRD----EMMSIETLSDEFKLKTAN 268


>gi|325279156|ref|YP_004251698.1| seryl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
 gi|324310965|gb|ADY31518.1| seryl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
          Length = 424

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 12/219 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +  LG +    +     +E  + G  E+  P + +AD    +G+      +M  
Sbjct: 163 GAGFPLYKGLGARLQRALINFFLDENIKAGYQEVQPPLMVNADSGYGTGQLPDKDGQMYY 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           + + N   +   PT E  +T+I+R  I     LP         FR E     +   G+ R
Sbjct: 223 VNEDN---LYLIPTAEVPVTNIYRDVILDGDQLPVKNTAYSACFRREAGSYGKDVRGLNR 279

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG----DLS 207
             +F   +       PE S  +   M      +  +LGL    +R   G I         
Sbjct: 280 LHQFDKVEIVQI-TRPEVSYEALEGMVKHVESLLIKLGLPYRIVRLCGGDISFTSALTFD 338

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
            E    A     +V    +F +F        F D     
Sbjct: 339 FEVYSKAQEKWLEVSSVSNFEEFQANRLKLRFKDKGDKK 377


>gi|309379419|emb|CBX21986.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 431

 Score = 67.1 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 55/434 (12%), Positives = 112/434 (25%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVNRWTRAYGYRQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          +  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNRDER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEAQLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L     +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRAQDFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++  ++ N    
Sbjct: 414 QTVAAADLTNTLQQ 427


>gi|295106322|emb|CBL03865.1| seryl-tRNA synthetase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 429

 Score = 67.1 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 71/210 (33%), Gaps = 13/210 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    +   + +     G  E   P + +A+    +G+   + +++    +     +
Sbjct: 173 LGARLERALINFMADTHASRGYKEWWCPAMANAETLTGTGQLPKFEEDLFHTTEG----L 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I    +     LP  +      FR+E     R   G++R  +F   + 
Sbjct: 229 YLIPTAEVQLTNIHAGEVLDAGQLPLKYCAFTPCFREEAGSAGRDTRGLIRVHQFDKVEM 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             +    E        +      I   LGL    +   +G IG   +     E  + +  
Sbjct: 289 VKYAKPEESFDDLEAMVAD-AENILQLLGLPYRVISLCTGDIGFSAAKTYDLEVWLPSYN 347

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           G  ++    +  DF     N  + D  +  
Sbjct: 348 GYKEISSCSNCTDFQARRANIKYRDPAAFK 377


>gi|83815326|ref|YP_445967.1| seryl-tRNA synthetase [Salinibacter ruber DSM 13855]
 gi|123528514|sp|Q2S1G4|SYS_SALRD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|83756720|gb|ABC44833.1| seryl-tRNA synthetase [Salinibacter ruber DSM 13855]
          Length = 428

 Score = 67.1 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 3/117 (2%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +L  G +    +     +     G  EM  P   + +    +G+       M  
Sbjct: 163 GSGFPFYLGKGARLQRALLNFFLDRARERGYTEMQAPLFVNPESAKGTGQIPDKDALMY- 221

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
             +         PT E  +T+  R  I +  +LP  +      +R E       +R 
Sbjct: 222 --EIPRDDFYPIPTAEVPVTNFHRDEILAADDLPRRYCTYSPCWRREAGSYGSDVRG 276


>gi|325973628|ref|YP_004250692.1| glycyl-tRNA synthetase [Mycoplasma suis str. Illinois]
 gi|325990080|ref|YP_004249779.1| glycyl-tRNA synthetase [Mycoplasma suis KI3806]
 gi|323575165|emb|CBZ40827.1| Glycyl-tRNA synthetase [Mycoplasma suis]
 gi|323652230|gb|ADX98312.1| glycyl-tRNA synthetase [Mycoplasma suis str. Illinois]
          Length = 431

 Score = 67.1 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 59/443 (13%), Positives = 124/443 (27%), Gaps = 39/443 (8%)

Query: 24  KLMLRTGMIHQHSKGIYS-------WLPLGQKALDNVNAIIREEQNRTGAIEMSV---PT 73
           K ++  G I+  S  IY        +  +G    +N+     +     G  ++ +     
Sbjct: 6   KYLIEKGFIYPSSS-IYDKLENSWDYGHIGVLLKNNIKNQWVDFFVTKG-KDVFLYEGNL 63

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           L S ++W  SG   ++ K ++         + Y    +        S   S        +
Sbjct: 64  LTSREVWEASGHIKNFEKTLVECKS---CNVRYELEGKLEKCQKCNSSDFSEPKKFQMIF 120

Query: 134 QIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
           +    +      +      +   +    +   +   S  ++         IF     + +
Sbjct: 121 KSDKYYLRPETAQTIFANIKLIALNSKVNLPFSVAQSGKAFRNEVSPEKTIFRTKEFEQL 180

Query: 194 PMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
                  P     + E  V +               F               +   E+  
Sbjct: 181 EFEEFVHPEDAQSTLERQVES------------IRKFLTEVFEFSPSSFSFESVPKEELP 228

Query: 254 APYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
                  D+H    F    E   ++ RG          +   L         + K     
Sbjct: 229 HYSLQNCDLHYNFEFGK-EELWGIANRGDFDLKSHQEYSGEKLHFQVE---ENSKTLVPF 284

Query: 314 MGSYGIGAMRVVAAVIE---SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
           +  + +G  R++ AVI+      DGK                 +    +   +   K+  
Sbjct: 285 VVEHSVGLNRLMLAVIKEKLIDIDGKKWKTLSLPVSLSPYKFAVLPLTKEQLNCSYKLVE 344

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK----FVSDSKVEIKHRLTGIR 426
            L   G  V     G  IG ++   D +G    + +  +      S   V ++ R  G +
Sbjct: 345 YLKSFGLSVILSHKG-SIGKRYRKQDEIGTFYCLTLDFEGGSWDSSAFSVTLRIRDNGKQ 403

Query: 427 EDMSLEEVINYASHRFSNNRPVL 449
             ++  E+  Y     S ++ +L
Sbjct: 404 VRVNKNELKEYILSCLSVSKELL 426


>gi|257453872|ref|ZP_05619150.1| histidyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
 gi|257448799|gb|EEV23764.1| histidyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
          Length = 432

 Score = 67.1 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/405 (12%), Positives = 110/405 (27%), Gaps = 29/405 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              + + + +  N+ G  ++ +P ++   L+  +     D   KEM    D+++      
Sbjct: 25  WRQLESTLVDVLNQFGFEQIRLPIVEETQLFARAIGDATDIVDKEMYSFYDKSNPPTALT 84

Query: 108 PTHEEVMTDIFRSHIKSYRNLPF-TFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
              E     +      +         + I   FR E   +    R R+F      SF   
Sbjct: 85  LRPEGTAGAVRAVVEHNLLRGDNPKLWYIGPMFRYEQPQKG---RYRQFHQLGVESFGSE 141

Query: 167 PEGSKH----SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
              +         +M+     +       +     +          +F+    +   +  
Sbjct: 142 LADADAELIIMTYQMWQKLGILDVVQLEINSLGEIDERLSYRKALVDFLTDKKSQLDED- 200

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---------- 272
             +     P+   ++   +   +     +      A S  H E L   L           
Sbjct: 201 SQRRLTTNPLRILDSKDKNTQQILENAPKLADFLGAASQQHFEALQHYLKAVGINFVINP 260

Query: 273 ---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                     + +        G++ ++     + G  G+   +  GS    A        
Sbjct: 261 KLVRGLDYYNKTVFEWTTDQLGSQATVCAGGRYDGLIGQIKSI--GSDKPAASEPAVGFA 318

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS--KVGCDVFWDDMGEQ 387
                   ++          +                K    L   +    V        
Sbjct: 319 MGLERLLLLMQKVQPFEATPACDVFVVAHPDVYTDAIKFAHELRTRRSNLRVKM-ASATS 377

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
           + +Q   AD  G  L VI+    V++ ++ IK   TG +  ++ +
Sbjct: 378 LKAQMKKADKSGAQLSVIIAQDEVANQQITIKKMATGDQITVASD 422


>gi|110004664|emb|CAK98999.1| putative histidyl-trna synthetase protein [Spiroplasma citri]
          Length = 418

 Score = 67.1 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 70/407 (17%), Positives = 128/407 (31%), Gaps = 25/407 (6%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
           L  +  ++R    +    E+  P  ++ DL+V S     D   KEM  L D+ ++A +  
Sbjct: 20  LSALELMLRSLAMQYNYHEIRTPIFEAKDLFVRSVGAETDIVSKEMFELLDKKERAFVLR 79

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   I    +     LP   + +   FR E RP+ G +R  +F           
Sbjct: 80  PEGTAPVIRSIIEDKLYGKYELPLKLFYLGNMFRYE-RPQHGRLR--QFNQFGV------ 130

Query: 167 PEGSKHSYNKMFVSYLRIF---HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFC 223
                 +Y       L  +     LGL ++ ++     +G   +    VL    + Q  C
Sbjct: 131 EVVGAKNYLLDVEVILLGYNLLKTLGLTNLTLKLNYLMVGEARTKYLGVLTAFFQDQTLC 190

Query: 224 SKDFMDFPIPSENTDFDDIISLNS----IVEQWTAPYAATSDVHNEKLFDSLP-----EN 274
           +   +             I          +  +  P      V  +KL   L      + 
Sbjct: 191 ADCKIRLQKNPLRVLDCKIDHDKFGNAPKIYDYLIPTENEEFVAIQKLLTKLGIPFSLDA 250

Query: 275 KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHD 334
           + V       G +F            T  G    D  V      +    V  A+      
Sbjct: 251 QLVRGLDYYTGIVFEI-VIEDQNRELTLLGGGCYDQLVHTFEPSLDYPAVGFALGLERLL 309

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAV 394
                    +A        +       R     +   L   G     D +   + +QF  
Sbjct: 310 LTLATNDIVLADEPYLDAYLICLSDHARHFAASLLLLLRASGFRADCDYLTRSVKAQFKS 369

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
            + L     +I+G K +  + ++IK++ TG  +++  E++I   S  
Sbjct: 370 LERLKAKNAIIIGDKELKKNVLKIKNQQTGKEQEVKFEKIIAVLSKE 416


>gi|332234654|ref|XP_003266521.1| PREDICTED: histidyl-tRNA synthetase, cytoplasmic isoform 1
           [Nomascus leucogenys]
 gi|332234656|ref|XP_003266522.1| PREDICTED: histidyl-tRNA synthetase, cytoplasmic isoform 2
           [Nomascus leucogenys]
          Length = 509

 Score = 67.1 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 62/488 (12%), Positives = 135/488 (27%), Gaps = 64/488 (13%)

Query: 11  LQENPRDAEIA----SHKLMLRTG---------MIHQHSKGIYSWLPLGQKALDNVNAII 57
           L++    AE+     +  L L+            + +  KG   + P      + V  +I
Sbjct: 21  LKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKGTRDYSPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +    +G+Y    K +  L D+  + +             
Sbjct: 81  IHCFKRHGAEVIDTPVFELKETL--TGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEGSKHSYNK 176
                 +   L         K      P     R REF   D     +  P        K
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLK 193

Query: 177 MFVSYL---RIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +    L   +I   L   +     +    I G    +F  +  + +     S + +   +
Sbjct: 194 IMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKMSWEEVKNEM 253

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDV-------HNEKLFDSLPENKRVSAR----G 281
             E     ++        Q     +    +        N++  + L + K +       G
Sbjct: 254 VGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFG 313

Query: 282 IEVGHIFYFGTKYSLPMSATFKGAD---------------------GKDHYVQMGSYGIG 320
           I+    F       L                               G  +   +G +   
Sbjct: 314 IDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPK 373

Query: 321 AMRVVAAVIESSHDGKGIIW------PDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             +V    +    +    I        +       + + + +  +   +   K+ + L  
Sbjct: 374 GRKVPCVGLSIGVERIFSIVEQRLEALEEKVRTTETQVLVASAQKKLLEERLKLVSELWD 433

Query: 375 VGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G           ++ +Q    +  G PL  I+G + + D  ++++   +    D+  E+
Sbjct: 434 AGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRRED 493

Query: 434 VINYASHR 441
           ++     R
Sbjct: 494 LVEEIKRR 501


>gi|330998357|ref|ZP_08322181.1| serine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329568463|gb|EGG50268.1| serine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 429

 Score = 67.1 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 81/223 (36%), Gaps = 15/223 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  L      +     G   +   G +    +     +E  ++
Sbjct: 133 METELPKDALPHWELAKKYNLIDFDLGVKITGAGFPVYRGKGARLQRALINFFLDEARKS 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PT+ +      +G+      +M      N       PT E  +T+I+R  I  
Sbjct: 193 GYEEIMPPTVVNEASGYGTGQLPDKEGQMYHCNLDN---FYLIPTAEVPVTNIYRDVILD 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            ++LP         FR E     +   G+ R  EF   +    D  PE S+ S+ +M   
Sbjct: 250 EKDLPVKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVEIVRIDK-PEHSEQSHQEMLAH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPI--GGDLSHEFIVLADTGETQV 221
              +  +L L    +R   G +     + ++F V ++  +  +
Sbjct: 309 VEGLLQKLELPYRILRLCGGDMSFTSSICYDFEVYSEAQKRWL 351


>gi|281425692|ref|ZP_06256605.1| histidine--tRNA ligase [Prevotella oris F0302]
 gi|281400279|gb|EFB31110.1| histidine--tRNA ligase [Prevotella oris F0302]
          Length = 454

 Score = 67.1 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 65/455 (14%), Positives = 140/455 (30%), Gaps = 62/455 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ-------------SADLWVE-- 82
           G   + P      + +   I++     G  ++  P ++                L+    
Sbjct: 10  GTRDFGPEEMAKRNYIFNTIKDVYALYGFQQIETPAMETLQTLMGKYGEEGDKLLFKILN 69

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI------FRSHIKSYRNLPFTFYQIQ 136
           SG Y +   +   L++RN   +      + +  D+      +    +    LPF  YQIQ
Sbjct: 70  SGDYLNKVTD-KELSERNPLHLASKLCEKGLRYDLTVPFARYVVMHREELQLPFKRYQIQ 128

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL-------- 188
             +R +   +    R REF   DA         ++    ++  +    F           
Sbjct: 129 PVWRADRPQKG---RYREFYQCDADVVGSDSLLNEVELMQIVDTVFTKFGVRVQIKINNR 185

Query: 189 ----GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS-------ENT 237
               G+  +   A+          +   +          +    D  I         E T
Sbjct: 186 KILTGIAEVIGEADKIVDITVAIDKLDKIGLDNVNAELKADGISDEAIEKLQPIISLEGT 245

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE----------VGHI 287
           + D + ++  ++E          +   + + D+L      +   ++           G I
Sbjct: 246 NEDKLNTIAKVLEGSDVGLKGVEET--KFILDALKTTGLNNEIQLDLTLARGLNYYTGAI 303

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F      +   S T  G    +     G  G+  + +             +      A  
Sbjct: 304 FEVKALDTPMGSIT-GGGRYDNLTGIFGMPGLSGVGISFGADRIYDVLNALDLYPKEAVN 362

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVI 405
              ++ I   ++     C    A+  K G       D    ++  Q + A+    P  V+
Sbjct: 363 ATQVLFINFGEKET-AYCLPFVAKARKAGIRTEIFPD--KAKMKKQMSYANAKNIPYVVL 419

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            G   +++ K+ +K+  TG +  ++++E+I   S 
Sbjct: 420 AGENEINEGKLMLKNMQTGEQTLITIDELIATVSK 454


>gi|329938954|ref|ZP_08288328.1| histidyl tRNA synthetase [Streptomyces griseoaurantiacus M045]
 gi|329301839|gb|EGG45732.1| histidyl tRNA synthetase [Streptomyces griseoaurantiacus M045]
          Length = 420

 Score = 67.1 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 60/415 (14%), Positives = 117/415 (28%), Gaps = 14/415 (3%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y  LP        V   I      +G   +  P  +S DL+        D   KEM  
Sbjct: 9   GTYDLLPPDSATFLAVREAIARPLRNSGYGYIETPGFESVDLFARGVGESTDIVTKEMYA 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              +    +   P     +             NLP   +     +R E   +    R R 
Sbjct: 69  FETKGGDRLALRPEGTASVLRAALEANLHKAGNLPVKLWYSGSYYRYERPQKG---RYRH 125

Query: 155 FLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFI 211
           F    A       P            +Y  +  R     +    +    P+      +F+
Sbjct: 126 FSQVGAEAIGAEDPALDAELIILADQAYRSLGLRGFRVLLNSLGDKECRPVYRAALQDFL 185

Query: 212 VLADTGETQVFCSK----DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
              D  E  +  ++      +D   P       D   L   +      Y           
Sbjct: 186 RGLDLDEETLRRAEINPLRVLDDKRPDVQKQLTDAPILRDYLCDACKAYHEEVRELLRAA 245

Query: 268 FDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
             +  ++ R+  RG++      F   +    S +  G  G+   +     G     V  A
Sbjct: 246 GVAFEDDPRL-VRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGPALPSVGWA 304

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQ 387
           +               +    ++ +      +  R         L ++G    +   G+ 
Sbjct: 305 LGVDRTVLALEAEGIELPLPSVTSVYAVPLGEEARRVLFAKVTELRRLGIATDFAYGGKG 364

Query: 388 IGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +      A+  G    ++ G + +++  V++K   +G +  + L E++     R 
Sbjct: 365 LKGAMKNANRSGARYAIVAGERDLAEGVVQLKDMESGEQAPVGLNEIVAELETRL 419


>gi|189499787|ref|YP_001959257.1| seryl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
 gi|238692278|sp|B3ENZ9|SYS_CHLPB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|189495228|gb|ACE03776.1| seryl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
          Length = 427

 Score = 67.1 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 19/236 (8%)

Query: 17  DAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSV 71
           D     +KL +    R   I     G   ++  G +    +   + +      G  E+  
Sbjct: 143 DHLDLGNKLGILDFERGAKI--SGTGFPVYIGKGARLERALLNFMLDCHTENHGYTEVFP 200

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + + D    +G++  +  ++  + + N   +   PT E  +T++ R+ +     LP +
Sbjct: 201 PFMVNEDSLRGTGQWPKFADQVYYMNEDN---LYAIPTAEVPVTNLHRNEMLKDEELPIS 257

Query: 132 FYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           +      FR E     +   G +R  +F   +   F    E       K+  +   I + 
Sbjct: 258 YAAYSACFRREAGSYGKDTRGFLRVHQFNKIEMVKFTRPEESYDAL-EKILQNAEAILNA 316

Query: 188 LGLKSIPMRAESGPI----GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           L +    +   SG I          E    A+    +     +F D+     N  F
Sbjct: 317 LRIPYRVLLLCSGDISAGATKCYDIEVWSPAEKKYLEASSCSNFEDYQARRANIRF 372


>gi|242794846|ref|XP_002482459.1| glycyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
 gi|218719047|gb|EED18467.1| glycyl-tRNA synthetase [Talaromyces stipitatus ATCC 10500]
          Length = 698

 Score = 67.1 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/292 (11%), Positives = 82/292 (28%), Gaps = 23/292 (7%)

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
            +   + + +              ++         E +  AD     +   K+    P+ 
Sbjct: 387 VDYSKLRFRQHMANEMAHYAADCWDAELHTSYGWIECVGCADRSAYDLTVHKNKTGAPLF 446

Query: 234 SENTDFDDIISLNSIVEQWTAPYAA----------------TSDVHNEKLFDSLPENKRV 277
                 +  +     V    + +                  T D+  +   D     K  
Sbjct: 447 VREALPEPKVFEQWQVNITKSKFGPRFKKDAKKVEAAIESLTEDLREKLSLDLAKNGKIE 506

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                  G               T      +++   +     G  R++ +++E S+  + 
Sbjct: 507 IDVEGIDGGKAELDKDLVAIEKKTVT-QHVREYTPNVVEPSFGIGRILYSLLEHSYWHRA 565

Query: 338 IIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
                 V  F   +   K      +  +      +++  +  + G     DD    IG +
Sbjct: 566 GDEARGVLSFPPVVSPTKVLLVPLSTHESFVPFVKRLGLKFRRAGISSKVDDSSSSIGKR 625

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +A  D LG P  + +  + V D+   ++ R +  +   + +E++        
Sbjct: 626 YARNDELGTPFGITIDFQSVKDNTFTLRDRDSTKQVRATEDEILQAVKSMVD 677



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     N+  + R+        +E+    L   ++   SG  D +   M +
Sbjct: 79  AGLYDYGPPGCALQANIIDVWRKHFVLEEDMLEVDTTMLTPHEVLKTSGHVDKFADWMCK 138


>gi|253577336|ref|ZP_04854653.1| seryl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843236|gb|EES71267.1| seryl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 428

 Score = 67.1 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 8/167 (4%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +   N  G  EM  P + + D    +G+   + +++ +L   
Sbjct: 165 FYKGLGARLERALINFMMDLHSNEHGYEEMLPPYIVNQDSLYGTGQLPKFEEDLFKLTGS 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREF 155
           ND      PT E  +T+  R  I +  +LP  +      FR E         G++R  +F
Sbjct: 225 ND--YYLIPTAEVPVTNYHRDEILNAEDLPRYYVAYSSCFRSEAGAAGRDTRGLIRQHQF 282

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
              +                    +  R+   LGL    +   +G +
Sbjct: 283 NKVEMIKIVHPDTSYDELEKMT-ENAERVLQLLGLPYRVLALCTGDM 328


>gi|329120375|ref|ZP_08249042.1| histidine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327462330|gb|EGF08656.1| histidine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 430

 Score = 67.1 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 52/410 (12%), Positives = 104/410 (25%), Gaps = 31/410 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
                  +     R G  ++  P ++   L+V S     D  GKEM   AD ND   +  
Sbjct: 29  WQAFEDTVVRWTRRFGYSQIRTPIVEQTGLFVRSIGEETDVVGKEMYTFADSNDTLSLSL 88

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
                              N P   + +   FR E   +    R R+F      +     
Sbjct: 89  RPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERPQKG---RYRQFHQVGVEALGFDG 145

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLS----------HEFIVLADTG 217
                    M     R     G  ++ + +                    HE  +  D+ 
Sbjct: 146 PDVDAEMIAMCADLWRELGIAGELTLEINSLGNREERAAHRAALVAYLQTHENTLDDDSR 205

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEK-----LFDSL 271
                     +D   P+     +    L+  +     A Y     + + +         L
Sbjct: 206 RRMHTNPLRVLDSKNPALQDICNAAPHLSDYLGADSLAHYTGFKRLLDAQGIAYTENPRL 265

Query: 272 PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
                     +        G + ++     + G  G+       + G         ++  
Sbjct: 266 VRGLDYYNLTVFEWTTDKLGAQATVCGGGRYNGLIGELGGKDAPAIGFAMGIERLLLLVR 325

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
            +          +              +  + A  +    L   G +V      + + +Q
Sbjct: 326 EYGRLKTEAAPDIYL---------MQQEEGQAAAMRCATLLRAAGFNVLQHSGAQSLKNQ 376

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT-GIREDMSLEEVINYASH 440
              AD  G    VIVG+         +K       ++ ++   +    + 
Sbjct: 377 MKKADASGARFAVIVGASEAEQGAATLKDMQGWNGQQTVAAAALPELINQ 426


>gi|291387471|ref|XP_002710301.1| PREDICTED: histidyl-tRNA synthetase-like [Oryctolagus cuniculus]
          Length = 509

 Score = 67.1 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 63/490 (12%), Positives = 129/490 (26%), Gaps = 68/490 (13%)

Query: 11  LQENPRDAEIA----SHKLMLRTG---------MIHQHSKGIYSWLPLGQKALDNVNAII 57
           L++    AE      +  L L+            + +  KG   + P      + V  +I
Sbjct: 21  LKQQKASAEQIEEEVAKLLKLKAQLGPDESKHKFVLKTPKGTRDYSPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +    +G+Y    K +  L D+  + +             
Sbjct: 81  IRCFKRHGAEVIDTPVFELKETL--TGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL-TPEGSKHSYNK 176
                 +   L         K      P     R REF   D        P        K
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLK 193

Query: 177 MFVSYLRIFHR-------------LGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQV 221
           +    L                   G+ +I    +S    I   +     V  +  + ++
Sbjct: 194 IMCEILSSLQIGDFLVKVNDRRILDGMFAICGVPDSKFRTICSSVDKLDKVSWEEVKNEM 253

Query: 222 FCSKDFM-------------------------DFPIPSENTDFDDIISLNSIVEQWTAPY 256
              K                            D  +       + +  L  + E  T   
Sbjct: 254 VGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQAMEGLGDLKLLFEYLTLFG 313

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA----TFKGADGKDHYV 312
                  +  L   L     V    + +      G + S   S      + G  G     
Sbjct: 314 VNDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGDEPSGVGSVAAGGRYDGLVGMFDPR 373

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
                 +G    +      S   + +   +       + + + +  +   +   K+ + L
Sbjct: 374 GRKVPCVGLS--IGVERIFSIVEQRLEALEEKVRTTETQVLVASAQKKLLEERLKLVSEL 431

Query: 373 SKVGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
              G           ++ +Q    +  G PL  I+G + + D  ++++   +    D+  
Sbjct: 432 WDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVASREEVDVRR 491

Query: 432 EEVINYASHR 441
           E+++     R
Sbjct: 492 EDLVEEIKRR 501


>gi|254383603|ref|ZP_04998953.1| histidyl-tRNA synthetase [Streptomyces sp. Mg1]
 gi|194342498|gb|EDX23464.1| histidyl-tRNA synthetase [Streptomyces sp. Mg1]
          Length = 419

 Score = 67.1 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 53/393 (13%), Positives = 108/393 (27%), Gaps = 23/393 (5%)

Query: 65  GAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           G   +  P  +  DL+        D   KEM  L  +    +   P     +        
Sbjct: 36  GYGYVETPGFEDVDLFARGVGESTDIVTKEMYTLTTKGGANLALRPEGTASVLRAALEAN 95

Query: 123 KS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDLTPEGSKHSYNKMFVS 180
                 LP   +     +R E   +    R R F    A       P            +
Sbjct: 96  LHKAGGLPVKLWYSGSYYRYERPQKG---RYRHFSQVGAEAIGAEDPALDAELIILADQA 152

Query: 181 YLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
           Y  +  R     +    +    P+  +    F+   D  E  V  ++      +  +  +
Sbjct: 153 YRTLGLRNFRILLNSLGDQECRPVYREALQTFLRGLDLDEETVRRAEINPLRVLDDKRPE 212

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFGTKYS 295
               ++   ++  +              L  +     E+     RG++      F   + 
Sbjct: 213 VQKQLAGAPMLRAYLCDACKAYHEEVRALITAAGVTFEDDEKLVRGLDYYTRTTFEFVHD 272

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
              S +  G  G+   +     G     V  A+               +     + +   
Sbjct: 273 GLGSQSAVGGGGRYDGLSEMIGGPALPSVGWALGVDRTVLALEAEGVELDIPAATSVFAV 332

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ-----FAVADLLGFPLQVIVGSKF 410
           A  +  +     +   L K G            G +        A+  G    V+ G + 
Sbjct: 333 ALGE-AKPVLFGLVTELRKSGIAADI-----SYGGKGLKGAMKDANRSGARFAVVAGDRD 386

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           +++  V++K   +G +  ++L EV      R +
Sbjct: 387 LAEGVVQLKDMESGEQSPVALAEVAEVLRARLA 419


>gi|319790114|ref|YP_004151747.1| seryl-tRNA synthetase [Thermovibrio ammonificans HB-1]
 gi|317114616|gb|ADU97106.1| seryl-tRNA synthetase [Thermovibrio ammonificans HB-1]
          Length = 427

 Score = 67.1 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 70/220 (31%), Gaps = 13/220 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G K    +   + +      G  E+  P L +      +G+   + +++ ++ 
Sbjct: 166 FVVYKKWGAKLERALINFMLDLHTTEHGYQEIIPPFLVNTKTMTGTGQLPKFEEDLYKIE 225

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSR 153
               + +   PT E  +T++  + I   + LP  +      FR E         G+MR  
Sbjct: 226 ---GEDLWLIPTAEVPLTNLHANEILPEKALPIYYTAYTPCFRKEAGAHGRDVRGIMRLH 282

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +                 +     ++   LGL    +   +G +G   +     E
Sbjct: 283 QFNKVELVKIVHPETSYDELEKLVKE-AEKVLQLLGLHYRVVELCTGDLGFSAAKTYDIE 341

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             + +     ++    +  DF        F D      +V
Sbjct: 342 VWIPSQERYREISSCSNCEDFQARRAKIRFRDKEGKTQLV 381


>gi|150002948|ref|YP_001297692.1| histidyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|294776608|ref|ZP_06742077.1| histidine--tRNA ligase [Bacteroides vulgatus PC510]
 gi|166227944|sp|A6KXA6|SYH_BACV8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|149931372|gb|ABR38070.1| histidyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|294449523|gb|EFG18054.1| histidine--tRNA ligase [Bacteroides vulgatus PC510]
          Length = 454

 Score = 67.1 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 58/466 (12%), Positives = 118/466 (25%), Gaps = 80/466 (17%)

Query: 37  KGIY----SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            GI      + P+     + +   IR+  +  G  ++  P++++                
Sbjct: 5   PGIPKGTRDFSPVEMAKRNYIFNTIRDVFHLFGYQQIETPSMENLSTL------------ 52

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M +  D  DK +       +    I    + S   +       +   R +L   F     
Sbjct: 53  MGKYGDEGDKLLFKIQNSGDYFNGITDEELLSRNAVKLASKFCEKGLRYDLTVPFARY-- 110

Query: 153 REFLMKDAYSFDLTPEGSKHSYNK--------MFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              +M                  +            Y      +G  S+    E   +  
Sbjct: 111 --VVMHRDEISFPFKRYQIQPVWRADRPQKGRYREFYQCDADVVGSNSLLNEVELVQMID 168

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--------DFDDIISLNSIVEQW--TA 254
            +  +F V                +    ++            D I   N   E      
Sbjct: 169 RVFGKFGVRVSIKINNRKILTGIAEIIGEADKIVDITVAIDKLDKIGLENVNAELASKGI 228

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGI----EVG------------HIFYFGTKYSLPM 298
           P  A   +    L     E K  + + +    E G             +   G K  + +
Sbjct: 229 PQEAIDKLQPIILLSGSNEEKLETLKTVLATSEAGLKGVEESEFILKTVSALGVKSEVEL 288

Query: 299 SATF--------------------KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
             T                      G+          +   G   +    I    D    
Sbjct: 289 DLTLARGLNYYTGAIFEVKALDVQIGSISGGGRYDNLTGVFGMDGMSGVGISFGADRIFD 348

Query: 339 -----IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                      A     L+ +   D+     C  I  ++ + G          ++  Q  
Sbjct: 349 VLNQLDLYPKEAVNGTELLFVNFGDKEA-AYCLPILTKVREAGVRAEIYPDASKMKKQMG 407

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            A+    P   IVG   +++ K+ +K+  TG +  ++ +E++    
Sbjct: 408 YANDKQIPFVAIVGENEMNEGKLTLKNMTTGEQSLVTPDELLAVVK 453


>gi|330719001|ref|ZP_08313601.1| seryl-tRNA synthetase [Leuconostoc fallax KCTC 3537]
          Length = 436

 Score = 67.1 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 83/255 (32%), Gaps = 20/255 (7%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + +E  + G  EM  P + +      +G+Y  + ++  R+         
Sbjct: 179 GARLERAVYNFMLDEHRKEGYTEMITPIVVNDSAMFGTGQYPKFQEDAYRV---AGLDQT 235

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAY 161
           Y PT E  +T+ +        +LP  F  +   FR E         G++R  +F   +  
Sbjct: 236 YIPTAEVPLTNYYSGETLPAEDLPIKFTALSPSFRKEAGAAGKDTRGLIRLHQFNKVEMV 295

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F    +           +   I  +LGL    +   +G +G   +     E  +     
Sbjct: 296 KFTKPEQSYDELEKMT-ANAENILQKLGLPYHVIALSTGDMGFSAAKTYDVEVWMPQQQV 354

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD---IISLNSIVEQWTAPYAATS-----DVHNEKLFD 269
             ++    +  DF     +  + D    + L   +         T      +  NE    
Sbjct: 355 YREISSVSNTEDFQARRMHITYRDEQGKLQLVHTLNGSGLAVGRTIAAILENYQNEDGTV 414

Query: 270 SLPENKRVSARGIEV 284
           ++PE  +    G E 
Sbjct: 415 TIPEVLQPYMGGQEY 429


>gi|227514189|ref|ZP_03944238.1| serine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
 gi|260662603|ref|ZP_05863498.1| seryl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
 gi|227087452|gb|EEI22764.1| serine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
 gi|260553294|gb|EEX26237.1| seryl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
 gi|299782726|gb|ADJ40724.1| Seryl-tRNA synthetase [Lactobacillus fermentum CECT 5716]
          Length = 432

 Score = 67.1 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 81/230 (35%), Gaps = 14/230 (6%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD 87
           R G +         ++ LG +    +   + +E  + G  E+  P + +A     +G++ 
Sbjct: 154 RAGKV--SGSRFVYYVGLGAQLERALYNFMLDEHMKEGYTEVLPPYIVNAHAMYGTGQFP 211

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL---- 143
            + +++ ++   N + M   PT E  +T+ F   +     LP     +   FR E     
Sbjct: 212 KFKQDVYQV---NGEDMTLIPTAEVPLTNYFAGEVIPAEKLPVYVTALTPSFRSEAGSAG 268

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           R   G++R  +F   +   +    +  +        +   I  +LGL    +   +  + 
Sbjct: 269 RDTRGLIRMHQFNKVEMVKYTKQDQSWEELDKMT-ANAENILQKLGLPYHVITLTTSDMS 327

Query: 204 GDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              S     E  + A     +V    + +DF     +  + D       V
Sbjct: 328 FTASETHDLELWMPAQNKYREVSSCSNCLDFQARRLHMQYRDENGKLQYV 377


>gi|184154542|ref|YP_001842882.1| seryl-tRNA synthetase [Lactobacillus fermentum IFO 3956]
 gi|238689196|sp|B2GF13|SYS_LACF3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|183225886|dbj|BAG26402.1| seryl-tRNA synthase [Lactobacillus fermentum IFO 3956]
          Length = 432

 Score = 67.1 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 81/230 (35%), Gaps = 14/230 (6%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD 87
           R G +         ++ LG +    +   + +E  + G  E+  P + +A     +G++ 
Sbjct: 154 RAGKV--SGSRFVYYVGLGAQLERALYNFMLDEHMKEGYTEVLPPYIVNAHAMYGTGQFP 211

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL---- 143
            + +++ ++   N + M   PT E  +T+ F   +     LP     +   FR E     
Sbjct: 212 KFKQDVYQV---NGEDMTLIPTAEVPLTNYFAGEVIPAEKLPVYVTALTPSFRSEAGSAG 268

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
           R   G++R  +F   +   +    +  +        +   I  +LGL    +   +  + 
Sbjct: 269 RDTRGLIRMHQFNKVEMVKYTKQDQSWEELDKMT-ANAENILQKLGLPYHVITLTTSDMS 327

Query: 204 GDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              S     E  + A     +V    + +DF     +  + D       V
Sbjct: 328 FTASETHDLELWMPAQNKYREVSSCSNCLDFQARRLHMQYRDENGKLQYV 377


>gi|253582385|ref|ZP_04859608.1| seryl-tRNA synthetase [Fusobacterium varium ATCC 27725]
 gi|251835924|gb|EES64462.1| seryl-tRNA synthetase [Fusobacterium varium ATCC 27725]
          Length = 423

 Score = 67.1 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 66/201 (32%), Gaps = 14/201 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  +G +    +   + +      G  E   P L   ++   +G+   + ++M +  
Sbjct: 162 FVLYRGMGARIERALINFMLDMHTTEHGYTEHITPFLVKREICEGTGQLPKFEEDMYKTT 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D     M    T E  MT+I R  I   + LP  +      FR E     +   G++R  
Sbjct: 222 D----DMFLISTSEITMTNIHRKEILDEKELPKYYTAYSPCFRREAGSYGKDVKGIIRVH 277

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +                 +      +  RL L    ++  +G +G   +     E
Sbjct: 278 QFNKVEMIKIATQESSYDELEKMVVN-AEEVLKRLELPYRVIQLCTGDLGFSAAKTYDLE 336

Query: 210 FIVLADTGETQVFCSKDFMDF 230
             + +     ++    +  DF
Sbjct: 337 VWLPSQNKYREISSCSNCTDF 357


>gi|29349720|ref|NP_813223.1| seryl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569915|ref|ZP_04847324.1| seryl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|298383977|ref|ZP_06993538.1| serine--tRNA ligase [Bacteroides sp. 1_1_14]
 gi|29341630|gb|AAO79417.1| seryl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251840296|gb|EES68378.1| seryl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|298263581|gb|EFI06444.1| serine--tRNA ligase [Bacteroides sp. 1_1_14]
          Length = 424

 Score = 67.1 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 15/223 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  L      +     G   +   G +    +     +E  ++
Sbjct: 133 METELPKDALPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARKS 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PT+ +A     +G+      +M          +   PT E  +T+I+R  I  
Sbjct: 193 GYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCE---VDDLYLIPTAEVPVTNIYRDVILE 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M   
Sbjct: 250 EKQLPIMNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRIDK-PEHSKESHQQMLDH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQV 221
              +  +L L    +R   G +        +F V ++  +  +
Sbjct: 309 VEGLLQKLELPYRILRLCGGDMSFTAALCFDFEVYSEAQKRWL 351


>gi|296136231|ref|YP_003643473.1| histidyl-tRNA synthetase [Thiomonas intermedia K12]
 gi|295796353|gb|ADG31143.1| histidyl-tRNA synthetase [Thiomonas intermedia K12]
          Length = 425

 Score = 66.7 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/405 (12%), Positives = 99/405 (24%), Gaps = 33/405 (8%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRNDKAMIYG 107
            +     +R      G   +  P L+   L+V   G   D   KEM    D  +   +  
Sbjct: 22  WEWFEEQVRALMGSYGYQNLRTPILEYTPLFVRGIGEVTDIVEKEMYSFTDALNGEPLTL 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
                              +     +     FR E   R    +  +   +         
Sbjct: 82  RPEGTAAVVRACIEHSLLYDGGKRLWYTGPMFRHERPQRGRYRQFHQVGAEALGFAGPDV 141

Query: 168 EGSKHSYNKMFVSYLRIFH-RLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
           +       +   + L +        +   +A+           ++      +      + 
Sbjct: 142 DVELILMARQLWARLGLSELVTLEINCLGQADERARHRVALIAYLEQH-IDQLDEDARRR 200

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE-------------KLFDSLPE 273
               P+   ++    + +L     +        S  H E              L   L  
Sbjct: 201 LHSNPLRVLDSKNPAMQALVEGAPKLIDYLGEASLAHFEGVQALLRAAGQSFTLNPRLVR 260

Query: 274 NKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIES 331
                   +        G + ++     + G              + +G  RV+  +IE+
Sbjct: 261 GLDYYNLTVFEWVTDRLGAQATVCAGGRYDGLIEQIGGKRTPACGWALGMERVLELLIEA 320

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
             +                L+            CE     L   G  V     G  + SQ
Sbjct: 321 GQNAPVSAPHAYAVMTSPELM------SRVMPLCES----LRAAGVRVQLHMGGGSMKSQ 370

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT----GIREDMSLE 432
              AD  G    ++ G + +   +V IK          +  + LE
Sbjct: 371 MKKADASGARWALVFGEQELQSGQVGIKDLRGAQDAQQQRMLPLE 415


>gi|217031455|ref|ZP_03436960.1| hypothetical protein HPB128_21g13 [Helicobacter pylori B128]
 gi|216946655|gb|EEC25251.1| hypothetical protein HPB128_21g13 [Helicobacter pylori B128]
          Length = 50

 Score = 66.7 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 28/43 (65%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWL 43
          M  SK F P L+E P+DA + SHK + + G I+Q   GIY++L
Sbjct: 1  MLFSKLFAPTLKEPPKDAVLKSHKHLAQAGYIYQVGSGIYNFL 43


>gi|292670501|ref|ZP_06603927.1| serine-tRNA ligase [Selenomonas noxia ATCC 43541]
 gi|292647911|gb|EFF65883.1| serine-tRNA ligase [Selenomonas noxia ATCC 43541]
          Length = 423

 Score = 66.7 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 73/208 (35%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +        + +    + G  EM  P + + D  + +G+   + ++M +L   
Sbjct: 164 FYKGLGARLERACINFMMDLHAEKHGYTEMLAPYIVNEDSMIGTGQLPKFAEDMFKL--- 220

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
           +       PT E   T+  R  I     LP  +      FR E     R   G++R  +F
Sbjct: 221 DGLDYYLVPTAEVPTTNYHRDEILEAEQLPEYYTSYTACFRAEAGSAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
             K      +TPE S     +M  +   +   L L    ++  +G +    +     E  
Sbjct: 281 N-KVELIKFVTPETSWDELERMVEAAEDVLKILELPYRVIQLCTGDMSFTSAKTYDLEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           + A     ++    +  D+     N  +
Sbjct: 340 MPAQNKYREISSCSNCTDYQARRANIKY 367


>gi|158335226|ref|YP_001516398.1| seryl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|189083555|sp|B0BYR8|SYS_ACAM1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|158305467|gb|ABW27084.1| seryl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 424

 Score = 66.7 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 75/206 (36%), Gaps = 12/206 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + ++Q   G +E+  P L ++D    +G+   + +E  +     +  + 
Sbjct: 173 GAALERALIQFMLDQQVEAGYVEVLPPVLVNSDSLTATGQLPKFAEESFKC---AEDDLW 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I +  +LP         FR E     R   G++R  +F   +  
Sbjct: 230 LSPTAEVPVTNLYRDEIINADDLPIFHCAYTPCFRREAGSYGRDTRGLIRLHQFNKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                   +      +  +   I   L L    ++  +G +G   +     E  + +   
Sbjct: 290 KLVHPSTSAAEH-EALVKNAAAILEALKLPYRVLQLCTGDLGFSAAKCYDLEVWLPSADC 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDII 243
             ++    +F+DF     N  F +  
Sbjct: 349 YREISSCSNFLDFQARRGNIRFKESG 374


>gi|229005605|ref|ZP_04163310.1| Histidyl-tRNA synthetase 1 [Bacillus mycoides Rock1-4]
 gi|228755637|gb|EEM04977.1| Histidyl-tRNA synthetase 1 [Bacillus mycoides Rock1-4]
          Length = 441

 Score = 66.7 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 61/434 (14%), Positives = 122/434 (28%), Gaps = 40/434 (9%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     E   R G   +  PTL   +L   + G      KEM  L D+
Sbjct: 14  DYLPAEQLLRNKIKRACEETFERYGCKPLETPTLNMYELMAYKYGGGAEILKEMYTLRDQ 73

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
            ++ +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 74  GNREIALRYDLTIPFAKVVA--MNPDIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 128

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                +    ++       F  +  +   + ++    +  +G +      +     +   
Sbjct: 129 VDIVGVESVIAEAELMAMAFDLFKTLNLDVTIQYNNRKLLTGILKSVEIQD-----EQTN 183

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA---------TSDVHNEKLFD 269
             +          I     D      +N  +E       +              N  + +
Sbjct: 184 DVILSLDKLEKIGIDGVRKDLQSRGIVNDTIEVVCHTVESCMTLELNEFKQIFSNSLVTE 243

Query: 270 SLPENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + E +++       GI+   +F       L M                 S G G  R  
Sbjct: 244 GINELQQLQQYLLALGIQDNTVFNPFLARGLTMYTGTVYEIFLTDGSITSSIGSGG-RYD 302

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLS 373
             +    +D              +    +   +     A            C +I   L 
Sbjct: 303 NIIGAFRNDNTSYPTIGISFGLDVIYTALTQKETESTCADIFIIPINTEVECLRITQLLR 362

Query: 374 KVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                 V  +  G ++      A+    P  +I+G   +S   + +++   G    + L 
Sbjct: 363 SKSTFKVELELAGRKLKRSLNYANKENIPYVLIIGDTEISTETIVLRNMKEGTEMKLPLS 422

Query: 433 EVIN-YASHRFSNN 445
            + +      F  +
Sbjct: 423 CIEDGTLKDYFKKS 436


>gi|222096790|ref|YP_002530847.1| histidyl-tRNA synthetase [Bacillus cereus Q1]
 gi|221240848|gb|ACM13558.1| histidyl-tRNA synthetase [Bacillus cereus Q1]
          Length = 437

 Score = 66.7 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 129/431 (29%), Gaps = 53/431 (12%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 12  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 71

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             +A+            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 72  GKRALALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 126

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 127 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILQAINIPTELTSDVILS 186

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDF-DDIISLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT      +S+    E +  P  A      
Sbjct: 187 LDKIEKIGIDGVQKDVLERGISEEMADTICNTVLSCLQLSIADFKEAFNNPLVADGVNEL 246

Query: 265 EKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
           ++L   L       A GI    IF       L M                 S G G  R 
Sbjct: 247 QQLQQYL------IALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGG-RY 299

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARL 372
              +     D              +    +   + V   A            C +I  +L
Sbjct: 300 DNIIGAFRGDDMNYPTVGISFGLDVIYTALSQKETVSSTADVFIIPLGTELQCLQIAQQL 359

Query: 373 SK---VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                +  ++         G +   A    +    P  +I+G + +S   V +++   G 
Sbjct: 360 RSTTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTETVVLRNMKEGS 413

Query: 426 REDMSLEEVIN 436
              + L  + +
Sbjct: 414 EVKVPLSSLKD 424


>gi|328948006|ref|YP_004365343.1| histidyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
 gi|328448330|gb|AEB14046.1| Histidyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
          Length = 433

 Score = 66.7 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 142/447 (31%), Gaps = 54/447 (12%)

Query: 31  MIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDS 88
            I  +  KG   +LP  +    ++   + +     G + +  P L+  + L  +S     
Sbjct: 4   FIQPKILKGFRDFLPQDEILRSDLIEKLTKTFRSYGFVPIDTPVLEYTEILLRKSN--GE 61

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
             K+M R  D   + +                H K     PF  Y I   +R E +P+ G
Sbjct: 62  TEKQMFRFEDNGGRDVAMRFDLTVPFARFTAQH-KEELYFPFKRYHISKVWRGE-KPQVG 119

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL----------RIFHRLGLKSIPMRAE 198
             R  EF+  D  +       S      +  + L           + HR        +  
Sbjct: 120 RYR--EFVQCDFDTVGSDSAVSDFETLSLMKAALSAIGVDEIKIHVNHRGIFNRFLKKLG 177

Query: 199 SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---- 254
                 D+      +A  GE +V    + +     S     D I  L+S  E  +     
Sbjct: 178 LSEKSEDILRAVDKIAKVGEEKVSAELEEITGNADSSAKIIDYIKPLSSFEETLSHIEEL 237

Query: 255 PYAATSDVHNEKLFDSLPENKRV---------SARGIEVGH-------IFYFGTKYSLPM 298
                 D    K   S+ +   +           RG++          +    +  S+  
Sbjct: 238 AGGEDEDSKRMKTIFSMMKAAGIEGTYMLDPAITRGLDYYTGIVYETFLEKLPSIGSVCS 297

Query: 299 SATFKGADGKDHYVQMGSYG--IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKA 356
              +    G     ++   G  IG  R++A + E         +           + I  
Sbjct: 298 GGRYDNLAGLYMKEKLPGVGSSIGLDRLIAGLSELGITNAKGSYL---------DVEIFN 348

Query: 357 HDQVCRDACEKIYARLSKVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
            D+      +++ A+L K G  V    D    +I  Q++V D    P  +++ S   + +
Sbjct: 349 TDENLNVQYQEVAAKLRKEGISVEVFPDT--VKINKQYSVTDKKQIPWGIMLSSNSETAN 406

Query: 415 KVEIKHRLTGIR-EDMSLEEVINYASH 440
            + +K+  T    E +S+E+  +    
Sbjct: 407 TITLKNLKTREIFESISIEDAASKIKD 433


>gi|283138943|gb|ADB12546.1| seryl-tRNA synthetase [uncultured bacterium 9F08]
          Length = 428

 Score = 66.7 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 75/241 (31%), Gaps = 22/241 (9%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSK---GI---YSWLPLGQKALDNVNAIIREEQN-RTGA 66
            P D      +L    G+    +    G        PL  +    +   + +      G 
Sbjct: 135 EPLDHVDIGQRL---GGLDFDAASKLTGSRFAVMSGPL-ARLHRALIQFMLDLHTTEHGY 190

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E  VP + ++D    +G+   + +++  L    +      PT E  +T++ R  I    
Sbjct: 191 RETYVPYIVNSDSLRGTGQLPKFEEDLFALQ--GEHDYYLIPTAEVPVTNLVREEIIEAA 248

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP  F      FR E     R   G++R  +F   +             +   +     
Sbjct: 249 QLPLCFAAHTPCFRSEAGSYGRDTRGMIRQHQFEKVELVQIVHPEHSF-EALEALTGHAE 307

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +  RLGL    M   +G IG         E  +       ++    +F DF        
Sbjct: 308 VVLQRLGLPYRLMNLCTGDIGFSACKTYDLEVWLPGQEKYREISSCSNFRDFQARRMQAR 367

Query: 239 F 239
           +
Sbjct: 368 W 368


>gi|15605830|ref|NP_213207.1| seryl-tRNA synthetase [Aquifex aeolicus VF5]
 gi|3915066|sp|O66647|SYS_AQUAE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|2982982|gb|AAC06595.1| seryl-tRNA synthetase [Aquifex aeolicus VF5]
          Length = 425

 Score = 66.7 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 70/208 (33%), Gaps = 12/208 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +   + +   + G  E+  P L   ++ + +G+   + +++ +    N   +
Sbjct: 170 WGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCERDN---L 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMRSREFLMKDA 160
              PT E  +T+++R  I    NLP         +R E         G++R  +F   + 
Sbjct: 227 YLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
                           +      +   LGL    +   +G +G   +     E    +  
Sbjct: 287 VKIVHPDTSYDELEKLVKD-AEEVLQLLGLPYRVVELCTGDLGFSAAKTYDIEVWFPSQN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIIS 244
              ++    +  DF     NT F D  +
Sbjct: 346 KYREISSCSNCEDFQARRMNTRFKDSKT 373


>gi|312130764|ref|YP_003998104.1| seryl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
 gi|311907310|gb|ADQ17751.1| seryl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
          Length = 423

 Score = 66.7 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 57/172 (33%), Gaps = 8/172 (4%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
              G   +   G K    +      E  + G  E+  P + +A     +G+      +M 
Sbjct: 163 SGAGFPFYKGKGAKIQRALINFFLNEAEKAGYFEVQPPIVINAASGFGTGQLPDKEGQMY 222

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
                    +   PT E  +T+++R  I S   LP         FR E         G+ 
Sbjct: 223 HATA---DDLYLIPTAEVPVTNMYRDVILSENELPKKNVAYTPCFRREAGSWGAHVRGLN 279

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           R  +F   +      TPE S  +  +M      +  +L L    ++   G +
Sbjct: 280 RLHQFDKVEIVQI-TTPEKSYDALEEMLNHVRGLLEKLQLPYRILKLCGGDM 330


>gi|228953605|ref|ZP_04115646.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229070776|ref|ZP_04204005.1| Histidyl-tRNA synthetase 1 [Bacillus cereus F65185]
 gi|228712355|gb|EEL64301.1| Histidyl-tRNA synthetase 1 [Bacillus cereus F65185]
 gi|228806030|gb|EEM52608.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 436

 Score = 66.7 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 68/428 (15%), Positives = 134/428 (31%), Gaps = 47/428 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFGRYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRDIALRYDLTIPFAKVVA--MNPNLRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+++ I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFRTLNLEISIQYNNRKLLNGILQAINIPTELTNDVILS 185

Query: 214 ADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            D  E        KD ++  I  E  D      L+ +              +N+ + D +
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLTIVDF---KEAFNNQLVADGV 242

Query: 272 PENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            E +++       GI    IF       L M                 S G G  R    
Sbjct: 243 NELQQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGG-RYDNI 301

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLSK- 374
           +     D              +    +   + +   A            C +I  +L   
Sbjct: 302 IGAFRGDSMNYPTVGISFGLDVIYAALSQKETISSTADLFIIPLGTELQCLQIAQQLRST 361

Query: 375 --VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +  ++         G +   A    +    P  +I+G + +S + V +++   G    
Sbjct: 362 TSLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTNTVVLRNMKEGSEMK 415

Query: 429 MSLEEVIN 436
           + L  + N
Sbjct: 416 VPLTSLKN 423


>gi|291288281|ref|YP_003505097.1| seryl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885441|gb|ADD69141.1| seryl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
          Length = 422

 Score = 66.7 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 12/197 (6%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           ++ LG K    +   + +     G  E+  P L +A+    +G+   + ++  +      
Sbjct: 165 YMGLGAKLERALINFMLDAHAERGYKEVLAPYLVNAEAMKGTGQLPKFEEDAFKCEKDG- 223

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLM 157
             +   PT E  +T+++   I     LP         FR E     +   G++R  +F  
Sbjct: 224 --LYLIPTAEVSVTNLYSQEILDEEMLPVKHCSYSACFRREAGSHGKDVRGLIRQHQFNK 281

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVL 213
            +        +        +  S   I  +L +    M   SG +G         E  + 
Sbjct: 282 VELVKVVKPEDSDTELME-LLESAEMILQKLNIPYRIMTLCSGDLGFSSAKTFDIEVWLP 340

Query: 214 ADTGETQVFCSKDFMDF 230
           +  G  ++     FMDF
Sbjct: 341 SQGGYREISSCSTFMDF 357


>gi|190571128|ref|YP_001975486.1| histidyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018532|ref|ZP_03334340.1| histidyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|229470704|sp|B3CLR6|SYH_WOLPP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|190357400|emb|CAQ54834.1| histidyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995483|gb|EEB56123.1| histidyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 407

 Score = 66.7 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/385 (12%), Positives = 116/385 (30%), Gaps = 21/385 (5%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G + +  P  +  +++ ++     D   KEM    D+  K++   P     +  +    
Sbjct: 34  YGFLPVQTPIFEYTEVFTKTLGDSSDIITKEMYTFIDKGGKSITLRPEFTAAIVRLLIEK 93

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF--- 178
                  P   + I   FR E   +    +  +   +     D   +    S  +     
Sbjct: 94  KL---QAPIKLFSIGPAFRYERPQKGRQRQFHQINFEVFGIEDPKADIELISLAQHLLTE 150

Query: 179 ----VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
                +     + LG      +     I      +  +  D+    +      +D    +
Sbjct: 151 FGINKNVKLEINSLGDSETITQYREALISYLKKFQNDLSEDSQNRLIKNPLRILDSKDKT 210

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL-PENKRVSARGIEVGHIFYFGTK 293
           +     D   ++    + ++ +        + L       +K V         +F F T+
Sbjct: 211 DKEIISDAPKISDYYTKESSYFFDQVLNGLQALGIPYTVNSKLVRGLDYYCHTVFEFVTE 270

Query: 294 YSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLIN 353
                 A F G    +    +G    G                 +I         I +I 
Sbjct: 271 DLGAQGAVFAGGRYDNLVSSVG----GKHTPAIGFAGGIERIMELINYAEKKERPIYIIP 326

Query: 354 IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413
           I    +        + + L + G  V ++  G  + ++   A+     + +I G + +S 
Sbjct: 327 IGGEAEEH---ALTLASELRRNGLYVIYEYSG-TLKTRMKKANQANAKVVLIFGDEELSS 382

Query: 414 SKVEIKHRLTGIREDMSLEEVINYA 438
             ++IK+  TG  + ++ ++ +   
Sbjct: 383 KTLKIKNMDTGEEKMIARDKTVENI 407


>gi|171920557|ref|ZP_02931826.1| histidyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|185179074|ref|ZP_02964808.1| histidyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188024235|ref|ZP_02996934.1| histidyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188518650|ref|ZP_03004089.1| histidyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|188524466|ref|ZP_03004475.1| histidyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195867600|ref|ZP_03079602.1| histidyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198273714|ref|ZP_03206249.1| histidyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209554579|ref|YP_002284686.1| histidyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225550573|ref|ZP_03771522.1| histidine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225551031|ref|ZP_03771977.1| histidine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|229470702|sp|B5ZB96|SYH_UREU1 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|171903254|gb|EDT49543.1| histidyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|184209071|gb|EDU06114.1| histidyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188018892|gb|EDU56932.1| histidyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188997735|gb|EDU66832.1| histidyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|195659586|gb|EDX52966.1| histidyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195660657|gb|EDX53912.1| histidyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198249742|gb|EDY74523.1| histidyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209542080|gb|ACI60309.1| histidyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225378846|gb|EEH01211.1| histidine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|225379727|gb|EEH02089.1| histidine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 421

 Score = 66.7 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 52/407 (12%), Positives = 119/407 (29%), Gaps = 22/407 (5%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
             ++   +     + G  ++  P  + A+L+++S     D   KEM    D++D+ +   
Sbjct: 21  FKSLENFLLTTTKKYGFQQIKTPIFEFAELFMKSAGESSDLVSKEMYLFKDKSDRWLALR 80

Query: 108 PTHEEVMTD-IFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT 166
           P     +   +  + +     LP      +  FR E        R R+F           
Sbjct: 81  PEGTAGVIRAVVENKLLLNNPLPLKLMYFEPCFRYERPQAG---RQRQFHQFGVEVLGTK 137

Query: 167 PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP----IGGDLSHEFIVLAD-----TG 217
                     +  + L+               +          L   F +  D     + 
Sbjct: 138 NIYYDFELIALANNILKKLAISDYVLEINYISTAHNRSLWVKSLQEYFNLYRDELTPLSQ 197

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHNEKLFDSLPENKR 276
           E         +D  + S+         + + +  +    +A    + +E           
Sbjct: 198 ERITTNPLRILDDKLESQKLVVQQAPKITNFLSNEEKEEFALIKKMLDEHDIKYRVNEGL 257

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V       G +F F +     +  +     G+   +   + G     +   +        
Sbjct: 258 VRGLDYYSGLVFEFISTSPRLLGQSTIIGGGRYGQLIKQTGGPDYEGIGFGIGIERLLIA 317

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS---KVGCDVFWDDMGEQIGSQFA 393
            +     +         I   D+   +   K+   L    ++  D+  D    +    F 
Sbjct: 318 LLDSNKQILNNFEDKYLIAYFDKELENEAIKLTQSLRINNQLNVDIILDT--IKADKIFR 375

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +A  L     +I+  K   + +V +K  L+  ++ ++L+E I     
Sbjct: 376 LAQRLNAKKLIILAKKEWLNKQVILKDLLSFEQKTLNLDE-IKKIKE 421


>gi|291277183|ref|YP_003516955.1| putative histidyl-tRNA synthetase [Helicobacter mustelae 12198]
 gi|290964377|emb|CBG40227.1| putative histidyl-tRNA synthetase [Helicobacter mustelae 12198]
          Length = 440

 Score = 66.7 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 62/440 (14%), Positives = 122/440 (27%), Gaps = 44/440 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G    LP    A + +   + +     G + +  P ++ A++ ++ G      KE+ R 
Sbjct: 9   SGFRDHLPKEAIAKEKLLKKVTQVFESFGFVPIETPHMEYAEVLIKQG-SKEIQKELYRF 67

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D   + +         +      + ++   LPF  Y +   FR E   R    R REF 
Sbjct: 68  QDHGGRDVALRFDQTVPLARFISQY-RNELPLPFKRYVVGNVFRGERAQRG---RYREFT 123

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADT 216
             D                            LG++   +      I   +   F +  +T
Sbjct: 124 QCDFDFIGSNSIACDAEI---IQVIYASMLSLGIEDFTIWLNHRSILNGICQYFGIKEET 180

Query: 217 GETQVFCSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN 274
                    D +D   P        + +   +  +E      +       E+ F  +   
Sbjct: 181 DIQNALRIIDKIDKIGPEGVSAELKEALRLTDKTIEALLKTTSIKQTQDKEEFFAEIAPM 240

Query: 275 KRV---SARGIE----VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
           K+      +GIE    +  I              F  A G  +Y  +             
Sbjct: 241 KQWNAELKKGIEELEQMYQILQDLEMDKSSYRVNFSIARGLAYYTGIIYETTITRLKSLG 300

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAH--------------------------DQVC 361
            + S      +    S         +I                             ++  
Sbjct: 301 SVCSGGRYDNLTKTFSKESMSGVGASIGLDRLLVGLEDLGLLSQKSTTARILIICTNEKY 360

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
                +I     +   +        ++  Q + AD  G    VI+G +   +  + +K+ 
Sbjct: 361 LSLAHRIAESFRRSEVNTEVYPEITKLKKQLSYADQKGHEFSVIIGEEEYKNRALTLKNM 420

Query: 422 LTGIRED-MSLEEVINYASH 440
            TGI+ D +S  + +     
Sbjct: 421 TTGIQLDCLSFLKALEIIKS 440


>gi|269926095|ref|YP_003322718.1| seryl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789755|gb|ACZ41896.1| seryl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 423

 Score = 66.7 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 66/208 (31%), Gaps = 13/208 (6%)

Query: 12  QENPRDAE---IASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           +E P DA        +L +              Y     G +    +   + + + + G 
Sbjct: 130 RELPFDARPHWEIGERLGIIDFAQGQKISGSRFYVLHGDGARLQRALITWMLDLRRQEGY 189

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P +   +    S     +   M       +  + + PT E  +T I  + I    
Sbjct: 190 KEVYPPAIVKEETLWASAHLPDFEDTMY---HDVEDDVWFIPTAEAPLTGIHMNEIIPVE 246

Query: 127 NLPFTFYQIQLKFRDELRPR----FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP  +      FR E         G+ R  +F   + Y + L  +  K    ++     
Sbjct: 247 SLPIRYAAYTPCFRREKMSAGKDVRGIKRGHQFDKVEMYHYTLPEDSPK-HLEELVKHAE 305

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHEF 210
               +LGL    +   +G +G      F
Sbjct: 306 DTAIKLGLTCRVVELCTGDLGFKSRRTF 333


>gi|332527854|ref|ZP_08403891.1| histidyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
 gi|332112431|gb|EGJ12224.1| histidyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 424

 Score = 66.7 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/400 (12%), Positives = 91/400 (22%), Gaps = 22/400 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +     +R    R     +  P ++   L+V   G   D   KEM  
Sbjct: 10  GMNDILPPESARWEWFEDTVRALMRRYAYQNVRTPIVEHTPLFVRGLGEVTDIVEKEMYS 69

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMR 151
             D  +   +                  +  +     + I   FR E   R         
Sbjct: 70  FVDSMNGDPLSLRPEGTAGVVRAVVEHSALYDGGKRLFYIGPMFRHERPQRGRYRQFHQV 129

Query: 152 SREFLMKDAYSFDLTPEGSKH--SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE 209
             E L       D            +          + LG         +  I     H 
Sbjct: 130 GVEALGFGGPDVDAEVILMCRALWKDLGLGEVRLDINSLGQPEERKAHRAALIAHFERHA 189

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ--WTAPYAATSDVHNE-- 265
            ++  D            +D   P+     +    L   + +       A  + +     
Sbjct: 190 ELLDEDARRRLHSNPLRILDTKNPAMQAMVEAAPQLIDYLGEASLKHFDALKAMLDAAGQ 249

Query: 266 --KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
             ++   L          +        G + ++     + G             G G   
Sbjct: 250 PYRVNPRLVRGMDYYNLTVFEWVTDKLGAQGTICGGGRYDGLVELVGGKPAPGIGWGMGI 309

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
                +                            D        ++   L   G  V    
Sbjct: 310 ERVLDLVQQLGVAPPAPVPDAYAIVP--------DGAALPQAMRVVEALRAAGVAVQLHV 361

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
            G  + SQF  AD  G    +I G   ++  +V +K    
Sbjct: 362 GGGSMKSQFKKADASGARHALIFGGDELARGEVAVKPLRD 401


>gi|172035843|ref|YP_001802344.1| seryl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171697297|gb|ACB50278.1| seryl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 429

 Score = 66.7 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 73/207 (35%), Gaps = 12/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + ++Q   G +E+  P L ++     +G+   + +E     +  +  + 
Sbjct: 178 GAALERALINFMLDQQIAAGYLEVMPPVLINSAALQGTGQLPKFAEE---SFNVPEDDLW 234

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++   I     LP         FR E     +   G++R  +F   +  
Sbjct: 235 LAPTAEVPVTNLYSGEILEAEILPIKHCAFTPCFRREAGSYGKDTRGLIRLHQFNKVELV 294

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                PE S+ ++ ++      I   L L    +   +G +G   +     E  + +   
Sbjct: 295 KLVH-PETSEAAHQQLVEDAEAILQALKLPYRVLELCTGDLGFGATKCYDLEVWMPSSNS 353

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF     N  F +   
Sbjct: 354 YREISSCSNCWDFQARRANIRFKEKGK 380


>gi|126290821|ref|XP_001377063.1| PREDICTED: similar to Histidyl-tRNA synthetase-like [Monodelphis
           domestica]
          Length = 510

 Score = 66.7 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 59/488 (12%), Positives = 127/488 (26%), Gaps = 64/488 (13%)

Query: 11  LQENPRDAEIA----SHKLMLRTG---------MIHQHSKGIYSWLPLGQKALDNVNAII 57
           L++    AE+     +  L L+            + +  KG   + P      + V  +I
Sbjct: 21  LKQQKAGAELIEEEVAKLLKLKAQLGPDEGKQKFVLKTPKGTRDYNPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +    +G+Y    K +  L D+  + +             
Sbjct: 81  ISCFKRHGAEVIDTPVFELKETL--TGKYGEDSKLIYDLKDQGGELLALRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL-TPEGSKHSYNK 176
                 +   L         K      P     R REF   D        P        K
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLK 193

Query: 177 MFVSYL------------------------------RIFHRLGLKSIPMRAESGPIGGDL 206
           +    L                              +            +     +  ++
Sbjct: 194 IICEILSALQLGDFLIKVNDRRILDGMFNVCGVPDSKFRTICSSVDKLDKMSWENVKNEM 253

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-----PYAATSD 261
             E  + ++  +      K      +  +      +      +E          Y     
Sbjct: 254 VEEKGLASEVADHIGAYVKQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFG 313

Query: 262 VHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
           +  +  FD SL          I    +    T+           A G  +   +G +   
Sbjct: 314 IAEKISFDLSLARGLDYYTGVIYEAVLLQSPTQQGEEALGVGSVAAGGRYDGLVGMFDPK 373

Query: 321 AMRVVAAVIESSHDG------KGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             +V    +    +       + +   +       + + + A  +   +   K+ A L  
Sbjct: 374 GRKVPCVGLSIGVERIFSIVEQRMEASEEKVRTTETQVLVAAAQKKLLEERLKLVAELWD 433

Query: 375 VGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G           ++ +Q    +  G PL  I+G + + D  ++++   +    D+  E 
Sbjct: 434 RGIKAELLYKKNPKLLTQLQYCEETGIPLVAIIGEQELKDGVIKLRCVASREEVDVRKEN 493

Query: 434 VINYASHR 441
           ++     R
Sbjct: 494 LVEEIRKR 501


>gi|239932408|ref|ZP_04689361.1| histidyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291440774|ref|ZP_06580164.1| histidyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291343669|gb|EFE70625.1| histidyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 420

 Score = 66.7 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 54/414 (13%), Positives = 118/414 (28%), Gaps = 12/414 (2%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y  +P        V   I      +G   +  P  +S +L+        D   KEM  
Sbjct: 9   GTYDLIPPDSAKYLAVRDAIAAPLRNSGYGYIETPGFESVELFARGVGESTDIVTKEMYA 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              +    +   P     +             NLP   +     +R E   +    R R 
Sbjct: 69  FETKGGDRLALRPEGTASVLRAALEANLHKAGNLPVKLWYSGSYYRYERPQKG---RYRH 125

Query: 155 FLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFI 211
           F    A       P            +Y  +        +    +    P+      +F+
Sbjct: 126 FSQVGAEAIGAEDPALDAELIILADQAYRSLGLSDFRILLNSLGDQECRPVYRAALQDFL 185

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              D  E  +  ++      +  +       ++   ++  +      T      +L  + 
Sbjct: 186 RGLDLDEDTLRRAEINPLRVLDDKRESVQKQLTGTPLLRDYLCDACKTYHEEVRELITAA 245

Query: 272 P---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAV 328
               E+     RG++      F   +    S +  G  G+   +     G     V  A+
Sbjct: 246 GVAFEDDPKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGPALPSVGWAL 305

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
                          +   + + +      +  R         L K G    +   G+ +
Sbjct: 306 GVDRTVLALEAEGVELQLPETTSVFAVPLGEEARRVLFAKVTELRKNGVAADFAYGGKGL 365

Query: 389 GSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +    A   G    +++G + +++  V++K+  +G +  + + E++     R 
Sbjct: 366 KAAMKAAHRSGARYALVLGERDLAEGVVQLKNMESGEQTAVGVNEIVAELESRL 419


>gi|189184154|ref|YP_001937939.1| histidyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
 gi|229558701|sp|B3CTK8|SYH_ORITI RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|189180925|dbj|BAG40705.1| histidyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
          Length = 423

 Score = 66.7 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/402 (12%), Positives = 122/402 (30%), Gaps = 20/402 (4%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           + ++ R      G   +S P ++  +++  +     D   KEM    D+ ++++   P  
Sbjct: 25  IVSVSRNLSQLYGFQPISTPIIEYTEIFNRTLGKDSDVLSKEMYVFLDKGNRSVSLRPEF 84

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +      +    + LP  ++     FR +        R R+F   +          S
Sbjct: 85  TASIMRAVIYNNLQNKKLPLKYFSSGPAFRYDNPQAG---RQRQFHQINLECIGDDSPFS 141

Query: 171 KHSY----NKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                   + +  +   +       +     ES         E+     T E        
Sbjct: 142 DAEIVLLAHDILKTLNLVDKVNLEINSLGCMESRAKYQQALVEYFSKYRT-ELSQDSQSR 200

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA------R 280
            ++ P+   ++       +++        Y   S  + +K+ + L              R
Sbjct: 201 LIENPLRILDSKNLHDKKISASAPSIHDYYTIKSRCYFDKVLEYLEFCGIKYTINANLVR 260

Query: 281 GIE--VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           G++     +F + T   +   +T  G    D   +     + + +     I  +   + +
Sbjct: 261 GLDYYCHTVFEY-TSTQIGAQSTVLGGGRYDGLFEQMGGKLASGKKTLPAIGFAAGIERL 319

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
               +  P  +  I I   D+        +  +L         D     I  +   A+ +
Sbjct: 320 ALLTNYTPVDVRPIVIIPVDEEHHQHGIMLLQKLRNNNITTVIDLQD-SISKRLNRANYI 378

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                + +G+  V +    IK   T     +   E+++Y  +
Sbjct: 379 KASKVIFIGAIEVREQSYRIKDLDTSNECVIIHNELLSYLQN 420


>gi|168702989|ref|ZP_02735266.1| histidyl-tRNA synthetase [Gemmata obscuriglobus UQM 2246]
          Length = 450

 Score = 66.7 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 128/447 (28%), Gaps = 54/447 (12%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   +LP    A + V    RE     G   +  P  +S D+ +  G  +S       L
Sbjct: 16  SGFRDYLPAVMLAREEVLRRAREVYRSYGFTPIDTPACESLDVLLGKGGDESDKLVYRVL 75

Query: 97  ADRNDK-AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           + R DK  M                +  +    PF  Y +   +R E   R G  R REF
Sbjct: 76  SARGDKAEMGLRFDLTVPFARFSAQY-INELGTPFKRYAMGPVWRGE---RPGQGRYREF 131

Query: 156 LMKDAYSFDLTPEGSKH-------------SYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
              D  +   T   +                +++  +         GL      A+    
Sbjct: 132 WQCDFDTIGTTSNAADIEAALVINDLFTALQFDRFEIRINNRMVLNGLLESLGIADKAAP 191

Query: 203 ------------GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
                          ++ E +  A     Q        D   P+E    D         E
Sbjct: 192 VLRSLDKLLKIGREKVAEEMVREAGITPEQANRVLMMTDLTGPNEQLLTDLEAWFGGANE 251

Query: 251 QWTAPYAATSDVHNEKLFDSLPENK----RVSARGIEV--GHIFY-----FGTKYSLPMS 299
           + TA      ++        + E +        RG++   G I+           S+   
Sbjct: 252 KATAGIRCLRELLTVAKAAGVAEGRIKIDLSICRGLDYYTGTIYETFLTDLPGIGSVCSG 311

Query: 300 ATFKG--ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH 357
             +    +      +      +G  R++AA+       +      + A     ++ +   
Sbjct: 312 GRYDNLASKYTKQVLPGVGASLGVDRLIAAM------EELKHPLLTGATTPAQVLVVNFD 365

Query: 358 DQVCRDACEKIYARLSKVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSK 415
                D  ++I   L   G  V    D   +++G Q   A+  GF L VI G        
Sbjct: 366 AARLGDY-QRIARALRAAGVSVEVFPD--AKKVGVQLGYAEKRGFKLAVIAGPAEFEQGV 422

Query: 416 VEIKHRLTGIREDMSLEEVINYASHRF 442
            ++K       + +   EV+       
Sbjct: 423 WKVKDLAKREEKTIVEAEVVGAVQSAV 449


>gi|163755331|ref|ZP_02162451.1| histidyl-tRNA synthetase [Kordia algicida OT-1]
 gi|161324751|gb|EDP96080.1| histidyl-tRNA synthetase [Kordia algicida OT-1]
          Length = 455

 Score = 66.7 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW--DDMGEQIGSQFAVADLL 398
                  K+ ++ +   ++    A  ++   L + G       D+   +   Q   A+  
Sbjct: 359 FPETVSDKVDVLCVNFGEKEAL-ASMRLIKVLREAGKSAELFPDNKNMK--KQMNYANKR 415

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
             P  +I+G   + ++   +K+   G + ++  +EV+
Sbjct: 416 NIPYVIIIGGNELENNTCVVKNMKNGTQLEVPFDEVL 452


>gi|332822156|ref|XP_003310915.1| PREDICTED: histidyl-tRNA synthetase, cytoplasmic-like isoform 2
           [Pan troglodytes]
 gi|332822158|ref|XP_003310916.1| PREDICTED: histidyl-tRNA synthetase, cytoplasmic-like isoform 3
           [Pan troglodytes]
          Length = 509

 Score = 66.3 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 63/488 (12%), Positives = 135/488 (27%), Gaps = 64/488 (13%)

Query: 11  LQENPRDAEIA----SHKLMLRTG---------MIHQHSKGIYSWLPLGQKALDNVNAII 57
           L++    AE+     +  L L+            + +  KG   + P      + V  II
Sbjct: 21  LKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKGTRDYSPRQMAVREKVFDII 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +  +  G+Y    K +  L D+  + +             
Sbjct: 81  IRCFKRHGAEVIDTPVFELKETLM--GKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEGSKHSYNK 176
                 +   L         K      P     R REF   D     +  P        K
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLK 193

Query: 177 MFVSYL---RIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +    L   +I   L   +     +    I G    +F  +  + +     S + +   +
Sbjct: 194 IMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEM 253

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDV-------HNEKLFDSLPENKRVSAR----G 281
             E     ++        Q     +    +        N++  + L + K +       G
Sbjct: 254 VGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFG 313

Query: 282 IEVGHIFYFGTKYSLPMSATFKGAD---------------------GKDHYVQMGSYGIG 320
           I+    F       L                               G  +   +G +   
Sbjct: 314 IDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPK 373

Query: 321 AMRVVAAVIESSHDGKGIIW------PDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             +V    +    +    I        +       + + + +  +   +   K+ + L  
Sbjct: 374 GRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWD 433

Query: 375 VGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G           ++ +Q    +  G PL  I+G + + D  ++++   +    D+  E+
Sbjct: 434 AGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRRED 493

Query: 434 VINYASHR 441
           ++     R
Sbjct: 494 LVEEIKRR 501


>gi|323701687|ref|ZP_08113359.1| seryl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323533460|gb|EGB23327.1| seryl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 424

 Score = 66.3 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 72/208 (34%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +   R  G  E+  P + ++D  V +G+   +  +M +L   
Sbjct: 164 FYKGLGARLERALINFMLDLHTREHGYTEVFPPFIVNSDSMVGTGQLPKFADDMFKLE-- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREF 155
                   PT E  +T+++R  I S   LP         FR E         G++R  +F
Sbjct: 222 -GLNYYLIPTAEVPVTNLYREEILSGEQLPIYHCAYSACFRAEAGAAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
              +   F    +              ++   LGL    +   SG +G   +     E  
Sbjct: 281 NKVELVKFCKPEDSFDELEKLTVN-AEKVLQALGLPYRVVLLCSGDMGFASAKTYDLEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           + +     ++    +F DF     N  F
Sbjct: 340 LPSYNAYKEISSCSNFQDFQARRANIKF 367


>gi|283779955|ref|YP_003370710.1| histidyl-tRNA synthetase [Pirellula staleyi DSM 6068]
 gi|283438408|gb|ADB16850.1| histidyl-tRNA synthetase [Pirellula staleyi DSM 6068]
          Length = 442

 Score = 66.3 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 62/440 (14%), Positives = 137/440 (31%), Gaps = 41/440 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   +LP      + + A  ++     G + +  P L+  ++    G  +   ++M R 
Sbjct: 8   AGFRDYLPEAMMPRERLIATAQKVYRSFGFVPIDTPALEYLEILSGKG-GEESDRQMYRF 66

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE----------LRPR 146
            D   + +         +      H+     LPF  Y I   +R E          ++  
Sbjct: 67  EDNGGRMVGMRFDLTVPLARFAAQHV-GQLGLPFKRYHIATVWRGERAQHGRYREFMQCD 125

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           F  + ++        +  +         ++  +         GL      A+   +    
Sbjct: 126 FDTIGTKSVAADIETACVIHELLQAIGISRFTIRVNNRAVLTGLLENLGLADKSTLVLRA 185

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-----------EQWTAP 255
             +          +   +         ++   F  I      +           E+  A 
Sbjct: 186 IDKLPKSTPEKVVEELTAVAGCTAEQAADVLKFASIGGTADEILTQLQPLVAGSEKGEAG 245

Query: 256 YAATSDVHNEKLFDSLPENKRV----SARGIEVGHIFYFGTKYSLPMSATFKGADGKDH- 310
               S++        +P +        ARG++      F T  +         + G+   
Sbjct: 246 VERLSEILRGAAAAGVPASHLQLDVSIARGLDYYTGAIFETFLTDLPKIGSVCSGGRYDN 305

Query: 311 ----YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
               Y +    GIGA   +  ++ +  D   I    + AP  ++       D+    A  
Sbjct: 306 LAALYTKQELPGIGASLGLDRLLAALEDLGMIEKVRTPAPVLVAFF-----DKTQLTAYL 360

Query: 367 KIYARLSKVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
           +I + + + G       D   +++G Q   AD  GF + ++ G + ++   V++K   TG
Sbjct: 361 EIASAIRRAGIGCEMFPD--AKKLGQQLQYADKRGFRVAIVAGDRELAAKMVQVKDLKTG 418

Query: 425 IREDMSLEEVINYASHRFSN 444
             +++S  E  +  +     
Sbjct: 419 ETQEVSTAESFDALTQAIQK 438


>gi|224540623|ref|ZP_03681162.1| hypothetical protein BACCELL_05537 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517762|gb|EEF86867.1| hypothetical protein BACCELL_05537 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 454

 Score = 66.3 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 5/129 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ I   ++        + A++ 
Sbjct: 329 FGMAGVSGVGISFGADRIFDVLNQLDLYPKEAVNSTQLLFINFGEKEA-AFSLNVLAQVR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G       D    ++  Q   A+    P   +VG   ++++KV +K+  TG +  +S 
Sbjct: 388 AEGIRAEIFPDSS--KMKKQMGYANAKNIPFVALVGENEMNENKVTLKNMETGEQTLVSA 445

Query: 432 EEVINYASH 440
           EE+I     
Sbjct: 446 EELIQTLKK 454


>gi|282899366|ref|ZP_06307334.1| Histidyl-tRNA synthetase, class IIa [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195733|gb|EFA70662.1| Histidyl-tRNA synthetase, class IIa [Cylindrospermopsis raciborskii
           CS-505]
          Length = 469

 Score = 66.3 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++  +L + G +V  +   +Q+G QF +AD  G    VI+GS+  +++K  +
Sbjct: 378 EDLMPIYLQVSQQLRRAGINVVTNFEKKQLGKQFQLADKQGIRFCVIIGSQEAANAKSCL 437

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           K   TG + ++    +           +P L
Sbjct: 438 KDLSTGEQIEVPFSNLATTLQQIL---QPTL 465


>gi|149030653|gb|EDL85690.1| threonyl-tRNA synthetase-like 1, isoform CRA_b [Rattus norvegicus]
          Length = 186

 Score = 66.3 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 1/89 (1%)

Query: 360 VCRDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
              D   ++   L   G     D D G  +  +   A L  +  Q +VG +  S   V +
Sbjct: 92  EQEDYARQVQQCLQAAGLVSDLDADCGLTLSRRVRRAQLAHYNFQFVVGQREQSQMSVNV 151

Query: 419 KHRLTGIREDMSLEEVINYASHRFSNNRP 447
           + R      +  L E +           P
Sbjct: 152 RTRDNRQLGERGLAESVQRLLELQDARVP 180


>gi|317050489|ref|YP_004111605.1| seryl-tRNA synthetase [Desulfurispirillum indicum S5]
 gi|316945573|gb|ADU65049.1| seryl-tRNA synthetase [Desulfurispirillum indicum S5]
          Length = 430

 Score = 66.3 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 72/214 (33%), Gaps = 13/214 (6%)

Query: 45  LGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           +G +    +   + +      G  E+  P L + +    +G+   + +++          
Sbjct: 168 MGARLERALINFMLDIHTGEHGYTEVQPPLLVNRESMTATGQLPKFEEDLFATE---GGN 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           ++  PT E  +T+I R  I     LP  +      FR E     +   G++R  +F   +
Sbjct: 225 LLLIPTAEVPVTNIHRDEILPMDALPLNYTAYTPCFRREAGSYGKDTKGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F       +     +      I  RL L    +   SG +G   +     E  V + 
Sbjct: 285 LVKFCHPDTSYEEL-ETLLHHAEVILQRLELPYRVVCLCSGDLGFSAAKTYDIEVWVPSQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
               ++    +F DF        F D    N +V
Sbjct: 344 NTFREISSCSNFEDFQARRGAIRFKDATGKNRLV 377


>gi|237709640|ref|ZP_04540121.1| histidyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|237725216|ref|ZP_04555697.1| histidyl-tRNA synthetase [Bacteroides sp. D4]
 gi|265754272|ref|ZP_06089461.1| histidyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
 gi|229436482|gb|EEO46559.1| histidyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4]
 gi|229456276|gb|EEO61997.1| histidyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|263234981|gb|EEZ20536.1| histidyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
          Length = 454

 Score = 66.3 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 59/466 (12%), Positives = 119/466 (25%), Gaps = 80/466 (17%)

Query: 37  KGIY----SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            GI      + P+     + +   IR+  +  G  ++  P++++                
Sbjct: 5   PGIPKGTRDFSPVEMAKRNYIFNTIRDVFHLFGYQQIETPSMENLSTL------------ 52

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M +  D  DK +       +    I    + S   +       +   R +L   F     
Sbjct: 53  MGKYGDEGDKLLFKIQNSGDYFNGITDEELLSRNAVKLASKFCEKGLRYDLTVPFARY-- 110

Query: 153 REFLMKDAYSFDLTPEGSKHSYNK--------MFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              +M                  +            Y      +G  S+    E   +  
Sbjct: 111 --VVMHRDEISFPFKRYQIQPVWRADRPQKGRYREFYQCDADVVGSNSLLNEVELVQMID 168

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--------DFDDIISLNSIVEQW--TA 254
            +  +F V                +    ++            D I   N   E      
Sbjct: 169 RVFGKFGVRVSIKINNRKILTGIAEIIGEADKIVDITVAIDKLDKIGLENVNAELASKGI 228

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGI----EVGHI------FYFGTKYSLPMSATF-- 302
           P  A   +    L     E K  + + +    E G        F   T  +L + +    
Sbjct: 229 PQEAIDKLQPIILLSGSNEEKLETLKTVLAASETGMKGVEESEFILKTVSTLGVKSEVEL 288

Query: 303 ------------------------KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                                    G+          +   G   +    I    D    
Sbjct: 289 DLTLARGLNYYTGAIFEVKALDVQIGSISGGGRYDNLTGVFGMDGMSGVGISFGADRIFD 348

Query: 339 -----IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                      A     L+ +   D+     C  I A++ + G          ++  Q  
Sbjct: 349 VLNQLDLYPKEAVNGTELLFVNFGDKEA-AYCLPILAKVRETGVRAEIYPDAAKMKKQMG 407

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            A+    P   IVG   +++ K+ +K+  TG +  ++ +E++    
Sbjct: 408 YANDKQIPFVAIVGENEMNEGKLTLKNMTTGEQSLVTPDELLAVVK 453


>gi|257792717|ref|YP_003183323.1| seryl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|317489004|ref|ZP_07947531.1| seryl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|325831041|ref|ZP_08164365.1| serine--tRNA ligase [Eggerthella sp. HGA1]
 gi|257476614|gb|ACV56934.1| seryl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|316911871|gb|EFV33453.1| seryl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|325486962|gb|EGC89408.1| serine--tRNA ligase [Eggerthella sp. HGA1]
          Length = 429

 Score = 66.3 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 70/205 (34%), Gaps = 13/205 (6%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    +   + +     G  E   P + +A+    +G+   + +++    +     +
Sbjct: 173 LGARLERALINFMADTHASRGYKEWWCPAMANAETLTGTGQLPKFEEDLFHTTEG----L 228

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I    +     LP  +      FR+E     R   G++R  +F   + 
Sbjct: 229 YLIPTAEVQLTNIHAGEVLDAGQLPLKYCAFTPCFREEAGSAGRDTRGLIRVHQFDKVEM 288

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             +    E        +      I   LGL    +   +G IG   +     E  + +  
Sbjct: 289 VKYAKPEESFDDLEAMVAD-AENILQLLGLPYRVISLCTGDIGFSAAKTYDLEVWLPSYN 347

Query: 217 GETQVFCSKDFMDFPIPSENTDFDD 241
           G  ++    +  DF     N  + D
Sbjct: 348 GYKEISSCSNCTDFQARRANIKYRD 372


>gi|212690605|ref|ZP_03298733.1| hypothetical protein BACDOR_00091 [Bacteroides dorei DSM 17855]
 gi|212666851|gb|EEB27423.1| hypothetical protein BACDOR_00091 [Bacteroides dorei DSM 17855]
          Length = 464

 Score = 66.3 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 59/466 (12%), Positives = 119/466 (25%), Gaps = 80/466 (17%)

Query: 37  KGIY----SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKE 92
            GI      + P+     + +   IR+  +  G  ++  P++++                
Sbjct: 15  PGIPKGTRDFSPVEMAKRNYIFNTIRDVFHLFGYQQIETPSMENLSTL------------ 62

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           M +  D  DK +       +    I    + S   +       +   R +L   F     
Sbjct: 63  MGKYGDEGDKLLFKIQNSGDYFNGITDEELLSRNAVKLASKFCEKGLRYDLTVPFARY-- 120

Query: 153 REFLMKDAYSFDLTPEGSKHSYNK--------MFVSYLRIFHRLGLKSIPMRAESGPIGG 204
              +M                  +            Y      +G  S+    E   +  
Sbjct: 121 --VVMHRDEISFPFKRYQIQPVWRADRPQKGRYREFYQCDADVVGSNSLLNEVELVQMID 178

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENT--------DFDDIISLNSIVEQW--TA 254
            +  +F V                +    ++            D I   N   E      
Sbjct: 179 RVFGKFGVRVSIKINNRKILTGIAEIIGEADKIVDITVAIDKLDKIGLENVNAELASKGI 238

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGI----EVGHI------FYFGTKYSLPMSATF-- 302
           P  A   +    L     E K  + + +    E G        F   T  +L + +    
Sbjct: 239 PQEAIDKLQPIILLSGSNEEKLETLKTVLAASETGMKGVEESEFILKTVSTLGVKSEVEL 298

Query: 303 ------------------------KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
                                    G+          +   G   +    I    D    
Sbjct: 299 DLTLARGLNYYTGAIFEVKALDVQIGSISGGGRYDNLTGVFGMDGMSGVGISFGADRIFD 358

Query: 339 -----IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFA 393
                      A     L+ +   D+     C  I A++ + G          ++  Q  
Sbjct: 359 VLNQLDLYPKEAVNGTELLFVNFGDKEA-AYCLPILAKVRETGVRAEIYPDAAKMKKQMG 417

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            A+    P   IVG   +++ K+ +K+  TG +  ++ +E++    
Sbjct: 418 YANDKQIPFVAIVGENEMNEGKLTLKNMTTGEQSLVTPDELLAVVK 463


>gi|301753573|ref|XP_002912605.1| PREDICTED: probable histidyl-tRNA synthetase, mitochondrial-like
           [Ailuropoda melanoleuca]
          Length = 505

 Score = 66.3 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/465 (8%), Positives = 119/465 (25%), Gaps = 45/465 (9%)

Query: 20  IASHKLMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL 79
              H+   ++  I +  KG     P      + +  ++     R GA  +  P  +  ++
Sbjct: 47  KPQHE---KSNFIIKTPKGTRDLSPQQMVVREKILDLVIGCFKRHGAKRLDTPAFELKEM 103

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
             E   Y      +  L D+  + +                +              + + 
Sbjct: 104 LTEK--YGEDSGLIYDLKDQGGELLSLRYDLTVPFARYLAMNKVKKMKRYHVGKVWRRES 161

Query: 140 RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
              ++ R+      +F +   +   +          ++          + +    +    
Sbjct: 162 PTIVQGRYREFCQCDFDIAGQFDPMIPDAECLKIMCEILSGLQLGDFLIKVNDRRILDGM 221

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
             + G    +F  +  + +     S + +   + +      ++        Q     +  
Sbjct: 222 LAVCGVPESKFHAICSSIDKLDKISWNDVRHEMVARKGLAPEVADRIGDYIQCHGGVSLV 281

Query: 260 SDV-------HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK--------- 303
            ++        N++  + L + K +       G         SL     +          
Sbjct: 282 EEMFQDSILSQNKQAIEGLGDLKLLFEYLTLFGIAEKISFDLSLARGLDYYTGVIYEAVL 341

Query: 304 ----------------------GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
                                          +          +    I +  + +     
Sbjct: 342 LQTPAQAEESLNVGSVAAGGRYDGLVGMFDPKGHKVPCVGFSIGVERIFAIVEQRMKTSG 401

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGF 400
             +   +  +           +   K+ + L   G           ++ +Q    + +G 
Sbjct: 402 QKIRTTETQVFVATPQKNFLHER-LKLISELWDAGIKAELLYKNNPKLLTQLHYCEHMGI 460

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           PL VI+G + + +  ++++   +     +  E ++     R S +
Sbjct: 461 PLAVIIGEQELKEGVIKLRSVASREEVAIKRENLVAEIQKRLSES 505


>gi|327310354|ref|YP_004337251.1| histidyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
 gi|326946833|gb|AEA11939.1| histidyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
          Length = 428

 Score = 66.3 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 53/424 (12%), Positives = 116/424 (27%), Gaps = 32/424 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G+    P    AL  V   +       G   +  P ++  + L  ++GR      E+   
Sbjct: 14  GMRDITPEQFYALRRVEDSLSRIAEAFGYRRVETPAVEHFEVLARKAGR--EIVDEIYYF 71

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +         +  +    ++  + + + ++    ++     P+ G  R  EF 
Sbjct: 72  RDKAGRELGLRFDMTVPVARVLSYRLEEPKPVRWYYFTKVWRY---DEPQHGRYR--EFY 126

Query: 157 MKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL-----SHEF 210
                      P         M  S   +  +  +  +  RA    +   L       E 
Sbjct: 127 QFGVELVGSDSPRADAEVLALMAKSIEAVGVKDYVIRLSDRAAMDKVLASLGVEGSREEV 186

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           + + D          + +D    +          +  + EQ     A       +K   S
Sbjct: 187 LRILDK--RGKVPDDEILDMLRRAGLGGGAAEALMALVSEQRPGSEAPDLFSKYDK---S 241

Query: 271 LPENKRVSARGIE-VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
           L E      + ++  G +       S+     +      + Y       +G       +I
Sbjct: 242 LGERYSRVVKALDAYGVLDRLVVDLSIVRGLDYYTGMVFEAYAGEYKLAVGGGGRYDNLI 301

Query: 330 ESSHDGKGIIWPDSVAPFKISL------------INIKAHDQVCRDACEKIYARLSKVGC 377
           E     +      ++   ++                I    +       ++   L   G 
Sbjct: 302 ELYSGIRTPALGFAIGVERLMEAAGIAPAEYPLDYYIYPMTEDAFKVAAEVAEALRNKGA 361

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V  D     +      A   G    VI+G K +    V+I+     +  ++ L  +   
Sbjct: 362 SVAIDLGELTLREALEHAAKTGVRHFVIIGKKELEKGVVKIRDMRRRVELEVELGRIREG 421

Query: 438 ASHR 441
               
Sbjct: 422 LQSL 425


>gi|238897950|ref|YP_002923630.1| histidine tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465708|gb|ACQ67482.1| histidine tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 429

 Score = 66.3 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 58/417 (13%), Positives = 123/417 (29%), Gaps = 24/417 (5%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP   +  + +   ++         E+ +P +++  L+  + G   D   KEM    DRN
Sbjct: 18  LPPDSELWEQIENTLKNILATHCYNEIRIPIIETTTLFKRAIGEVTDVVEKEMYTFDDRN 77

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY---QIQLKFRDELRPRFGVMRSREFLM 157
            +++   P            H   +      +Y     + +   + R R       E   
Sbjct: 78  SESVTLRPEGTAGCVRAGVEHGLFHNKEQRFWYIGSMFRYERPQKGRYRQFHQLGVEVFG 137

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                 D         + K       +   L                    E      T 
Sbjct: 138 LYGPDIDAELILMTARFWKKLGILNYVQLELNSIGSIEERSRYRESLLKFLEKNKAQLTE 197

Query: 218 ETQVFCSKDFMDFPIPSE----NTDFDDIISLNSIVEQWTAPYAATSDVHNE-----KLF 268
           E      K+ +      +        D  +    + ++    +       NE     ++ 
Sbjct: 198 EAIHRMHKNSLRLLDSKDQVVQKILADAPLLSEYLNDESKQHFLTLCQFLNESGISYRVN 257

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG---ADGKDHYVQMGSYGIGAMRVV 325
             L        + +      + G++ ++     + G     G         + IG  R+V
Sbjct: 258 PYLVRGLDYYNKTVFEWVTNHLGSQGAICAGGRYDGLVEQLGGKDSTPAVGFAIGLERLV 317

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
             V + + D        S       +              EKI   L ++   + +    
Sbjct: 318 LLVKKVNPDFYL-----SPKLDVYFVSENNTSRAKAIKLAEKIRDSLPQLKLKLHY--GK 370

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           ++I  Q + A+       +I+G   ++  K+ IK+ LTG +  +  E++I + +  F
Sbjct: 371 QKISKQLSSANKCSATFALILGENEIAKQKIVIKNLLTGEQNLLMQEDLILFLNKIF 427


>gi|313894660|ref|ZP_07828223.1| serine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313440850|gb|EFR59279.1| serine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 426

 Score = 66.3 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 67/204 (32%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +   ++ G  EM  P + + +    +G+   + ++M  + D     
Sbjct: 168 LGARLERALINFMVDLHVDKHGYTEMMTPYMVTRETLTGTGQLPKFAEDMYHVED---TE 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+     I S   LP  +      FR E     R   G++R  +F   +
Sbjct: 225 YFLIPTAEVTLTNYHGDEILSEEELPKYYTAFTACFRAEAGSAGRDTRGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLAD 215
                   +  K     +  +   +   L L    +   +G +          E  + A 
Sbjct: 285 MVKLAKPEDSFKEL-ETLTDNAEEVLRLLELPFRVITLCTGDMGFGSAKTYDVEVWMPAQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     N  F
Sbjct: 344 GKYREISSCSNMTDFQARRANIKF 367


>gi|332534673|ref|ZP_08410504.1| histidyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035885|gb|EGI72367.1| histidyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 372

 Score = 66.3 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 106/358 (29%), Gaps = 29/358 (8%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLRLADRN 100
           LP   +    V +I+RE     G  E+  P ++S DL+  S G   D   KEM   ADRN
Sbjct: 15  LPGDTQVWQKVESILRETVASFGYQEIRFPIVESTDLFKRSIGEVTDIVEKEMYTFADRN 74

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
              +   P    V       +   Y      +Y +   FR E   +    +  +F ++  
Sbjct: 75  GDLLTLRPEGTAVCVRAGNQNGLLYNQEQRLWY-MGPMFRHERPQKGRYRQFHQFGLETF 133

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
                               +        ++       S     D     +   +     
Sbjct: 134 GIATAD--IDAEVILLTAQLWEAFGITDHVRLELNSLGSNEARADYRDALVAYLEQHIDV 191

Query: 221 V--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------- 271
           +     +     P+   ++   D+ ++ +   + +    A S  H E L + L       
Sbjct: 192 LDEDSKRRMYSNPLRVLDSKNPDVQAILTDAPKLSENLDAESKEHFENLCERLDAAGVSY 251

Query: 272 -PENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
               K V         +F       G + ++     + G   +       + G       
Sbjct: 252 TVNEKLVRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVEQLGGKATPAVGFAMGLER 311

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV--GCDVFW 381
             ++  + +  G I  ++     + L  +     +      +I A+L K   G  V  
Sbjct: 312 LVLLLQALECVGDIRRNA----DVYLAAMGDKASIQ---APEIAAQLRKDVPGLRVMV 362


>gi|146302779|ref|YP_001197370.1| histidyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
 gi|189082295|sp|A5F9R5|SYH_FLAJO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|146157197|gb|ABQ08051.1| histidyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
          Length = 475

 Score = 66.3 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 1/98 (1%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
                      I +   D+    A + I  +L +    V       ++G QF  AD    
Sbjct: 377 FPETVAATSKAIFLNFGDKEALYASKAI-QKLRQENIKVELYPDNVKVGKQFQYADKRLI 435

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           P  V+VG + ++ +   +K+ +TG +  +  E +    
Sbjct: 436 PFAVLVGDQEINSNSYALKNLVTGEQVSVDFEGLKKTL 473


>gi|530495|emb|CAA83845.1| Pro-tRNA synthetase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 110

 Score = 66.3 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 5/105 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRL 96
           G   + P G +  + +   + EE  +     +  P L    L+  E    D +  E+  +
Sbjct: 6   GTMIFRPYGYRIWELIQKYLDEEFKKVNVDNVYFPLLIPESLFNKEKDHIDGFSPEIATV 65

Query: 97  A----DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
                 + ++ +   PT E +M D F + I SYR+LP  + Q   
Sbjct: 66  TRVGQKQLEENLFIRPTSEVLMMDYFSNEINSYRDLPLIYNQWCN 110


>gi|294056084|ref|YP_003549742.1| seryl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
 gi|293615417|gb|ADE55572.1| seryl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
          Length = 423

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 58/179 (32%), Gaps = 8/179 (4%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYD 87
               +     G   ++    + +  +     +E    G  E+  P + +A+    +G+  
Sbjct: 151 FARGVKATGAGFPFYVGEMSRLVRALVNFFLQEAQENGYEEVLPPIVVNAESATATGQLP 210

Query: 88  SYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL---- 143
               +M    +     +   PT E  +T+ +R  I     LP         FR E     
Sbjct: 211 DKEGQMYVDENEG---LYLIPTAEVPVTNFYRDEILEADQLPIYRCAYTPCFRREAGSWG 267

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
               G+ R  +F   +        E S     K+  +      +LGL    +R  +G I
Sbjct: 268 AHVRGLNRLHQFDKVELVK-WTDAETSMDELEKLRENVEGTLQKLGLPYRVLRMCTGDI 325


>gi|167765169|ref|ZP_02437282.1| hypothetical protein BACSTE_03555 [Bacteroides stercoris ATCC
           43183]
 gi|167696797|gb|EDS13376.1| hypothetical protein BACSTE_03555 [Bacteroides stercoris ATCC
           43183]
          Length = 424

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 15/223 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  L      +     G   +   G +    +     +E  ++
Sbjct: 133 METELPKDALPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARKS 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PT+ +A     +G+      +M          +   PT E  +T+I+R  I  
Sbjct: 193 GYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCE---VDDLYLIPTAEVPVTNIYRDVILD 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M   
Sbjct: 250 EKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRIDK-PEHSKESHQEMLDH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQV 221
              +  +L L    +R   G +        +F V ++  +  +
Sbjct: 309 VEGLLQKLELPYRILRLCGGDMSFTAALCFDFEVYSEAQKRWL 351


>gi|110775188|ref|XP_001122628.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Apis
           mellifera]
          Length = 77

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 379 VFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
              D D  + +  +   A L  F   ++VG K ++   V ++ R   +  ++ +++++  
Sbjct: 2   AELDTDPSDTLNKKIRNAQLAQFNFILVVGEKELNAGTVNVRTRDNVVHGEILVDDLLKK 61

Query: 438 ASHRFSNNR 446
               F   +
Sbjct: 62  FR-IFKERK 69


>gi|297741644|emb|CBI32776.3| unnamed protein product [Vitis vinifera]
          Length = 404

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/409 (13%), Positives = 125/409 (30%), Gaps = 27/409 (6%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDKAMI 105
            +  + +    RE     G  E+  P L+S  L+  ++G  +    ++    DR ++ + 
Sbjct: 1   MRLRNWLFNHFREVSRSFGFEEVDFPVLESEALFIRKAG--EEIRDQLYCFEDRGNRRVA 58

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P     +  +     KS  +LP  ++ +   +R E   R    R RE    +     +
Sbjct: 59  LRPELTPSLARLVIQKGKS-VSLPLKWFAVGQCWRYERMTRG---RRREHYQWNMDIIGV 114

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK 225
               ++       V++ +             +    +   L    I     G+  V   K
Sbjct: 115 PEVMAEAELISSIVTFFKRVGITASDVGFKVSSRKVLQEVLRCYSIPENLFGKVCVIIDK 174

Query: 226 DF---MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
                +D       +      ++  +++  +       +       +++ + K++ +   
Sbjct: 175 MEKIPIDEITKELKSLGMSEEAIKDLLQVLSIKSLTKLEEILGAAGEAVADLKQLFSLAE 234

Query: 283 EVGHIFYFGTKYSLPMSATFK--------GADGKDHYVQMGSY-----GIGAMRVVAAVI 329
           + G+  +     S+     +           +GK   +  G              V A  
Sbjct: 235 KFGYSEWIQFDASVVRGLAYYTGIVFEGFDREGKLRAICGGGRYDRLLSTFGGDDVPACG 294

Query: 330 ESSHDGKGIIWPDSVAPFK----ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
               D   I                   + A D   + A   +  RL + G  V      
Sbjct: 295 FGFGDAVIIELLKEKGLLPELSLQVENIVCALDHYLQGAAAAVATRLREKGQSVDLVLES 354

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           + +   F  A        ++VG+       V +K   +G + ++ L+E+
Sbjct: 355 KPLKWVFKRAARTNAQRLILVGNSEWQRGMVSVKILSSGEQYEIKLDEL 403


>gi|294661131|ref|YP_003573006.1| hypothetical protein Aasi_1519 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336281|gb|ACP20878.1| hypothetical protein Aasi_1519 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 434

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 8/168 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E  + G  E+  P L +      +G+      +M  
Sbjct: 175 GAGFPVYKGKGARLQRALINFFLDEARKAGYEEIQPPILVNKASAYGTGQLPDKEGQMY- 233

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
             +  ++ +   PT E  +T+++R  I S   LP         FR E         G+ R
Sbjct: 234 --ELANEPLYLIPTAEVPVTNLYRDQILSKDVLPIRHVAYTPCFRREAGSWGSHVRGLNR 291

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
             +F   +     L     +     M      +  +L L    ++  S
Sbjct: 292 LHQFDKVEIVEISLPELSYQAL-ETMRRYVESLVQKLELPYRVLKLCS 338


>gi|227538734|ref|ZP_03968783.1| histidine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241243|gb|EEI91258.1| histidine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 461

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 4/177 (2%)

Query: 266 KLFDSLPENKRVSARGI--EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           ++FD   E     ARG+    G IF   T      S    G       +       G   
Sbjct: 287 EVFDKYVELDITLARGLNYYTGCIFEVKTNEVSMGSIGGGGRYDDLTGMFGLKGLTGVGV 346

Query: 324 VVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD 383
              A  +  +D    +          + + I   ++        +  RL + G  V    
Sbjct: 347 SFGA--DRIYDVLEELNLYPQHESDNTRLLIVNFEKSIEAFTLPLLNRLRQAGIAVELYP 404

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
              ++  Q + AD    P  ++VG + V+  ++ +K+  +G ++ +S +E+    S 
Sbjct: 405 QAVKLKKQMSYADDKRIPYVLLVGEEEVNTGQLSLKNMNSGEQQKLSEQEITALLSK 461


>gi|138893692|ref|YP_001124145.1| seryl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|166222728|sp|A4IJ96|SYS_GEOTN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|134265205|gb|ABO65400.1| Seryl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 424

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 9/177 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P L +    + +G+   + ++     
Sbjct: 163 FVFYKGLGARLERALINFMLDIHLDEFGYQEVLPPYLVNRASMIGTGQLPKFAED---AF 219

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +++     PT E  +T++ R  I +  +LP  +      FR E     R   G++R  
Sbjct: 220 HLDNEDYFLIPTAEVPVTNLHRDEILTADDLPLYYAAYSACFRAEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           +F   +   F    +               I  RLGL    +   +G +G   +  +
Sbjct: 280 QFNKVELVKFVKPEDSYDELEKLTHQ-AETILQRLGLPYRVVALCTGDLGFSAAKTY 335


>gi|302561717|ref|ZP_07314059.1| histidyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
 gi|302479335|gb|EFL42428.1| histidyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
          Length = 420

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/393 (11%), Positives = 107/393 (27%), Gaps = 16/393 (4%)

Query: 61  QNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
              +G   +  P  ++ +L+        D   KEM     +    +   P     +    
Sbjct: 32  LRGSGYGYIETPGFENVELFARGVGESTDIVTKEMYAFETKGGDRLALRPEGTASVLRAA 91

Query: 119 RSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDLTPEGSKHSYNK 176
                    NLP   +     +R E   +    R R F    A       P         
Sbjct: 92  LEANLHKAGNLPVKLWYSGSYYRYERPQKG---RYRHFSQVGAEAIGAEDPALDAELIIL 148

Query: 177 MFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGET-----QVFCSKDFMD 229
              +Y  +  +     +    +    P+      +F+   D  E      ++   +   D
Sbjct: 149 ADQAYRSLGLQNFRILLNSLGDKECRPVYRSALQDFLRGLDLDEDTLRRAEINPLRVLDD 208

Query: 230 FPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFY 289
                +       +  + + +   A +    ++          + + V          F 
Sbjct: 209 KREAVQKQLTGAPLLRDYLCDACKAYHEEVRELITAAGVVFEDDPRLVRGLDYYTRTTFE 268

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           F        SA   G         +G   + ++     V  +    +       +     
Sbjct: 269 FVHDGLGSQSAVGGGGRYDGLSEMIGGPALPSVGWALGVDRTVLALEAEGVQLELPATTS 328

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
                   +       +     L K G    +   G+ + +    A+  G    +++G +
Sbjct: 329 VFAVPLGEEARRVLFAK--VTELRKNGVAADFAYGGKGLKAAMKAANRSGARYALVLGER 386

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
            +++  V++K   +G +  + + E++     R 
Sbjct: 387 DLAEGVVQLKDMESGEQTAVGVNEIVAELESRL 419


>gi|161869789|ref|YP_001598957.1| histidyl-tRNA synthetase [Neisseria meningitidis 053442]
 gi|189082302|sp|A9M402|SYH_NEIM0 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|161595342|gb|ABX73002.1| histidyl-tRNA synthetase [Neisseria meningitidis 053442]
          Length = 431

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 112/434 (25%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVGRWTRTYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEDKLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G          + S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLFLVSEYGSLEVNAAPDVYAMHQGERA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRTQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++  ++ N    
Sbjct: 414 QTVAAADLTNTLQQ 427


>gi|237753042|ref|ZP_04583522.1| histidyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375309|gb|EEO25400.1| histidyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
          Length = 434

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 117/429 (27%), Gaps = 39/429 (9%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           LP    A   +   I +   + G   +  P L+ A++  + G  D   KEM    D  ++
Sbjct: 14  LPKEAYAKSKMLQSIVQSFEKFGFAPIETPHLEYAEILKKQG-SDEIQKEMYHFLDHGER 72

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +         +      + K+   +PF  Y I   FR E   +    R REF   D   
Sbjct: 73  EVALRFDLTVPLARFIAQY-KNEVGIPFKRYCIGNVFRGERAQKG---RYREFTQCDFDF 128

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
                 G+            +    LGL+   +   +  I   L         T E    
Sbjct: 129 IGTDSIGADVEI---LQVIYQSLFDLGLRDFTIHINNRKIFNGLMESLNASNHTIEVLRI 185

Query: 223 CS---KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA 279
                K   +             +   +++  + A     S +   K  ++  E      
Sbjct: 186 IDKIEKIGKESVKQELQNKTPLNLDSIAMLLDFIAKIQKGSALELLKELEAFRELNHTLK 245

Query: 280 RGIEVGHIFYF---GTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
            GI+              +         A G  +Y  +              + S     
Sbjct: 246 SGIDELSTLCKILDPLIPAKFYKINLSIARGLGYYTGIVYETTLNALPSLGSVCSGGRYD 305

Query: 337 GIIWPDSVAPFKISLINIK--------------AHDQVCRD----------ACEKIYARL 372
            +    S         +I                 D+   D             K+   L
Sbjct: 306 NLTQNFSKDSLSGVGASIGLDRLLSGLEELNLIQSDKNVADTLLIPLHSLEYGYKVAQSL 365

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED-MSL 431
              G  +       +    F  A+  G+   VI G +    +   +K+  +G + + + L
Sbjct: 366 RDKGLKIEVFPEITKPKKSFNYANNKGYKFVVITGEEEEQQNTCTLKNMESGEQFNHLQL 425

Query: 432 EEVINYASH 440
           E VIN    
Sbjct: 426 EAVINAIKS 434


>gi|260655870|ref|ZP_05861339.1| serine--tRNA ligase [Jonquetella anthropi E3_33 E1]
 gi|260629486|gb|EEX47680.1| serine--tRNA ligase [Jonquetella anthropi E3_33 E1]
          Length = 430

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 67/204 (32%), Gaps = 10/204 (4%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +    + G  E +VP + S +    +G+   + +++ ++   +D  
Sbjct: 168 LGARLERAMANYMLDLHCLKQGYTEYNVPLMVSTETMTGTGQLPKFAEDLYKIGGDDDVP 227

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T++      S  +LP         FR E     +   G+MR  +F   +
Sbjct: 228 LWLIPTAEVPLTNLHSGETLSEDDLPMYMTAYTPCFRREAGSYGKDVRGIMRLHQFDKVE 287

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLAD 215
                                   +   LGL    +   SG I          E  + + 
Sbjct: 288 MVKLCTPETSYDELEKLTAD-AESVLQGLGLPYRVIVLCSGDIGFGSAKTYDVEVWLPSQ 346

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     N  +
Sbjct: 347 NCYREISSCSNCEDFQTRRMNCRY 370


>gi|251794129|ref|YP_003008860.1| seryl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247541755|gb|ACS98773.1| seryl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 427

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 9/167 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    + + + +   ++ G  E+  P L + D  + +G+   + +++ +++D 
Sbjct: 165 FYRGLGARLERALISFMMDLHSDQHGYEEVLPPYLVNRDSLIGTGQLPKFEEDLFKISDS 224

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREF 155
                   PT E  +T++ R  I S   LP  F      FR E         G++R  +F
Sbjct: 225 ---DYFLIPTAEVPVTNLHREEILSIEELPKHFVAYSSCFRSEAGAAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
              +        E           +  ++   LGL    +   +G +
Sbjct: 282 NKVELIKLAKPEESYDELEKMT-ANAEKVLQLLGLPYRVLALCTGDM 327


>gi|297623943|ref|YP_003705377.1| seryl-tRNA synthetase [Truepera radiovictrix DSM 17093]
 gi|297165123|gb|ADI14834.1| seryl-tRNA synthetase [Truepera radiovictrix DSM 17093]
          Length = 426

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 63/182 (34%), Gaps = 10/182 (5%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           L L  G +     G   +   G + L  +N          G  E++VP L +A+    +G
Sbjct: 152 LDLEAG-VKTTGAGFPVFKGPGARLLRALNTYCLNALVAAGYTEVAVPLLVNAESATATG 210

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL- 143
           +      +M  L D         PT E  +T++ R  I     LP  +      FR E  
Sbjct: 211 QLPDKEGQMYELRDG----FYLIPTSELALTNLHRGEILDAAELPLRYAAQTPCFRREAG 266

Query: 144 ---RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
                  GV R  +F   +       P+ S  +  +M      +   LG+    +   +G
Sbjct: 267 SYGAHVRGVNRVHQFDKVEMV-QFTHPDRSFEALEEMAAFAESLLETLGMPYRRLLMCTG 325

Query: 201 PI 202
            +
Sbjct: 326 DM 327


>gi|237756220|ref|ZP_04584783.1| seryl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691612|gb|EEP60657.1| seryl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 251

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 71/212 (33%), Gaps = 13/212 (6%)

Query: 47  QKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +   +  G  E+  P L   ++   +G+   +  ++ ++ D     + 
Sbjct: 6   ARLERALINFMLDVHIKQHGYTEVWTPALVKPEILFGTGQLPKFKDDLYKIEDE---DLY 62

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++    I S  +LP  +      FR E     +   G++R  +F   +  
Sbjct: 63  LIPTAEVTLTNLHADEILSEEDLPKYYTAYTPCFRKEAGSHGKDVKGILRQHQFDKVELV 122

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                 +       K+     RI   L +    +   +G +G   +     E  + +   
Sbjct: 123 KIVKPEDSYNE-LEKLVNEAERILQLLEIPYRVVLLCTGDMGFSAAKTYDIEVWIPSQNR 181

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             ++    +  DF        + D    N  V
Sbjct: 182 YREISSCSNTEDFQARRAKIRYKDKDGKNHYV 213


>gi|160890213|ref|ZP_02071216.1| hypothetical protein BACUNI_02653 [Bacteroides uniformis ATCC 8492]
 gi|270294260|ref|ZP_06200462.1| seryl-tRNA synthetase [Bacteroides sp. D20]
 gi|317481474|ref|ZP_07940540.1| seryl-tRNA synthetase [Bacteroides sp. 4_1_36]
 gi|156860601|gb|EDO54032.1| hypothetical protein BACUNI_02653 [Bacteroides uniformis ATCC 8492]
 gi|270275727|gb|EFA21587.1| seryl-tRNA synthetase [Bacteroides sp. D20]
 gi|316902384|gb|EFV24272.1| seryl-tRNA synthetase [Bacteroides sp. 4_1_36]
          Length = 424

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 15/223 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  L      +     G   +   G +    +     +E  ++
Sbjct: 133 METELPKDALPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARKS 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PT+ +A     +G+      +M          +   PT E  +T+I+R  I  
Sbjct: 193 GYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCE---VDDLYLIPTAEVPVTNIYRDVILD 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M   
Sbjct: 250 EKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRIDK-PEHSKQSHQEMLDH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQV 221
              +  +L L    +R   G +        +F V ++  +  +
Sbjct: 309 VEGLLQKLELPYRILRLCGGDMSFTAALCFDFEVYSEAQKRWL 351


>gi|237738388|ref|ZP_04568869.1| seryl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
 gi|229420268|gb|EEO35315.1| seryl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
          Length = 423

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 64/201 (31%), Gaps = 14/201 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +      G  E   P +   ++   +G+   +  +M R  
Sbjct: 162 FVLYRGLGARVERALINFMLDLHTLEHGYTEHITPFMVKREICEGTGQLPKFEDDMYRTT 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D     M    T E  MT+I R  I   + LP  +      FR E     +   G++R  
Sbjct: 222 D----DMFLISTSEITMTNIHRKEILDEKELPKYYTAYSPCFRREAGSYGKDVKGIIRLH 277

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHE 209
           +F   +                KM  +   +  RL L    ++  +G +          E
Sbjct: 278 QFNKVEMVKITNQESSYDEL-EKMVNNAEEVLQRLELPYRVIQLCTGDLGFGAAKTYDIE 336

Query: 210 FIVLADTGETQVFCSKDFMDF 230
             + +     ++    +   F
Sbjct: 337 VWLPSQKKYREISSCSNCEGF 357


>gi|153809521|ref|ZP_01962189.1| hypothetical protein BACCAC_03839 [Bacteroides caccae ATCC 43185]
 gi|149127829|gb|EDM19052.1| hypothetical protein BACCAC_03839 [Bacteroides caccae ATCC 43185]
          Length = 454

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 5/128 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     ++ I   ++        + A++ 
Sbjct: 329 FGMSGVSGVGISFGADRIFDVLNQLELYPKEAVNGTEVLFINFGEKEA-AFSMGVLAKVR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G       D    ++  Q + A+    P   IVG   +++ KV +K+  TG +  +S 
Sbjct: 388 AAGIRAEIFPDAS--KMKKQMSYANAKNIPFVAIVGENEMNEGKVMLKNMETGEQNLVSA 445

Query: 432 EEVINYAS 439
           EE+I    
Sbjct: 446 EELIAAVK 453


>gi|296170819|ref|ZP_06852387.1| histidine--tRNA ligase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894524|gb|EFG74263.1| histidine--tRNA ligase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 420

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/407 (15%), Positives = 115/407 (28%), Gaps = 45/407 (11%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            R G  ++ +P  +   L+        D   KEM   ADR D+++   P     +     
Sbjct: 33  RRAGYGDIELPIFEDTALFARGVGESTDVVSKEMYTFADRGDRSVTLRPEGTAGVVRAVI 92

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
            H      LP         FR E RP+ G  R  +  +         P            
Sbjct: 93  EHGLDRGALPVKLCYAGPFFRYE-RPQAGRYRQLQ-QVGVEAIGVDDPALDAEVIAVADA 150

Query: 180 SYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVFCSK----DFMDFPIP 233
            +  +        I    +    P   +L  EF+   D  +     ++      +D   P
Sbjct: 151 GFRSLGLDGFRLEITSLGDDSCRPQYRELLQEFLFGLDLDDETRRRAEINPLRVLDDKRP 210

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFY-- 289
                  D   L   +      +  T   H + L      N R+  RG++      F   
Sbjct: 211 GVRAMTADAPVLLDHLSDVAKQHFDTVLAHLDALGVPYVINPRM-VRGLDYYTKTTFEFV 269

Query: 290 ---FGTKYSLPMSATFKGADGK--DHYVQMGSYGIGAMRVVAAVIES--------SHDGK 336
               G +  +     + G   +     +    +G+G  R + A+             D  
Sbjct: 270 HDGLGAQSGIGGGGRYDGLMRELGGQDLSGIGFGLGVDRTLLALRAEGKSVGETARCDVF 329

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
            +   +        L           D                 + D G + G+    AD
Sbjct: 330 AVPLSEQAKLQLAVLAARLRAAGARVDMA---------------YGDRGLK-GAM-RAAD 372

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             G  + +++G + +    V +K   TG +  +  + V      +  
Sbjct: 373 RSGARVALVLGDRDIEAGTVGVKDLTTGEQVSVPADSVAAQVLSQLR 419


>gi|301753575|ref|XP_002912606.1| PREDICTED: histidyl-tRNA synthetase, cytoplasmic-like [Ailuropoda
           melanoleuca]
 gi|281345421|gb|EFB21005.1| hypothetical protein PANDA_000362 [Ailuropoda melanoleuca]
          Length = 509

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/495 (11%), Positives = 131/495 (26%), Gaps = 66/495 (13%)

Query: 11  LQENPRDAEIASHKL--MLRTG-----------MIHQHSKGIYSWLPLGQKALDNVNAII 57
           L++    AE    +L  +L+              + +  KG   + P      + V  +I
Sbjct: 21  LKQQKASAEQIEEELAKLLKLKAQLGPDEGKQKFVLKTPKGTRDYSPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +    +G+Y    K +  L D+  + +             
Sbjct: 81  VSCFKRHGAEVIDTPVFELKETL--TGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS--FDLTPEGSKHSYN 175
                 +   L         K      P     R REF   D                  
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLK 193

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPI---GGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            M      +     L  +  R     +    G    +F  +  + +     S + +   +
Sbjct: 194 IMCEILSSLQIGDFLVKVNDRRILDGMFAVCGVPDSKFRTICSSVDKLDKVSWEEVKNEM 253

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDV-------HNEKLFDSLPENKRVSARGIEVG 285
             E     ++        Q     +    +        N++  + L + K +       G
Sbjct: 254 VGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPELSQNKQALEGLGDLKLLFEYLTLFG 313

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE--SSHDGKGIIWPDS 343
                    SL     +      +  +       G   +    +     +DG   ++   
Sbjct: 314 ISDKISFDLSLARGLDYYTGVIYEAVLLQTPVRAGEEPLGVGSVAAGGRYDGLVGMFDPK 373

Query: 344 VAPFKISLINIKAHD---------QVCRDACE--------------------KIYARLSK 374
                   ++I             +   +                       K+ + L  
Sbjct: 374 GRKVPCVGLSIGVERIFSIVEQRLEALEEKVRTTETQVLVASAQKKLLEERLKLVSELWD 433

Query: 375 VGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G           ++ +Q    +  G PL  I+G + + D  ++++   +    D+  E+
Sbjct: 434 AGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVASREEVDVRRED 493

Query: 434 VINYASHRFSNNRPV 448
           ++     R   ++P+
Sbjct: 494 LVEEIKRR--TSQPL 506


>gi|218129700|ref|ZP_03458504.1| hypothetical protein BACEGG_01279 [Bacteroides eggerthii DSM 20697]
 gi|317475947|ref|ZP_07935202.1| seryl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988112|gb|EEC54436.1| hypothetical protein BACEGG_01279 [Bacteroides eggerthii DSM 20697]
 gi|316907879|gb|EFV29578.1| seryl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
          Length = 424

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 15/223 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  L      +     G   +   G +    +     +E  ++
Sbjct: 133 METELPKDALPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARKS 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PT+ +A     +G+      +M          +   PT E  +T+I+R  I  
Sbjct: 193 GYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCE---VDDLYLIPTAEVPVTNIYRDVILD 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M   
Sbjct: 250 EKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRIDK-PEHSKESHQEMLNH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQV 221
              +  +L L    +R   G +        +F V ++  +  +
Sbjct: 309 VEGLLQKLELPYRILRLCGGDMSFTAALCFDFEVYSEAQKRWL 351


>gi|87123701|ref|ZP_01079551.1| putative seryl-tRNA synthetase [Synechococcus sp. RS9917]
 gi|86168270|gb|EAQ69527.1| putative seryl-tRNA synthetase [Synechococcus sp. RS9917]
          Length = 425

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 8/169 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    +   + +     G  E+  P L ++     SG+   + +E  R AD     + 
Sbjct: 173 GARLERALINFMLDLHTSKGYREVLPPVLVNSASLTGSGQLPKFAEESFRCAD---DDLW 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T + R  I +   LP  +      FR E     R   G++R  +F   + Y
Sbjct: 230 LTPTAEVPVTSLHRDEIIAADQLPLRYVAYSPCFRREAGSYGRDTRGLIRLHQFNKVELY 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            F   P+ S+ ++ ++      +   L L    +   +G +G      +
Sbjct: 290 WF-AHPDQSEEAHAQITADAESVLQALELPYRVLDLCTGDLGFSARRTY 337


>gi|86130169|ref|ZP_01048769.1| Histidyl-tRNA synthetase [Dokdonia donghaensis MED134]
 gi|85818844|gb|EAQ40003.1| Histidyl-tRNA synthetase [Dokdonia donghaensis MED134]
          Length = 460

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/459 (13%), Positives = 124/459 (27%), Gaps = 69/459 (15%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRY---- 86
           P G +            +   IR +  R G   +  P+ +++         E  R     
Sbjct: 8   PKGTRDFSPEEVAKRSYIMNTIRTQFQRFGFQPIETPSFENSSTLMGKYGEEGDRLIFKI 67

Query: 87  ------------DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQ 134
                       D++ K                             H       PF  +Q
Sbjct: 68  LNSGDYLRKVKDDAFAKADSTALTPQISEKALRYDLTVPFARYVVQHQND-IVFPFKRFQ 126

Query: 135 IQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIP 194
           +Q  +R +   +    R REF   DA          +  + +++ +        G+    
Sbjct: 127 MQPVWRADRPQKG---RFREFYQCDADVVGSDSLWQEVEFVQLYDAVFSALKLEGVTIKM 183

Query: 195 MR------AESGPIGGDLSHEFIVLAD----------TGETQVFCSKDFMDFPIPSENTD 238
                           D   +F V  D          T E             +    T 
Sbjct: 184 NNRKVLSGIAEVIGASDKLIDFTVALDKLDKIGEEGVTKEMLAKGITQEAIEKVAPLFTL 243

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLF--DSLPENKRVSARGIEVGHIFYFGTKYSL 296
                   + ++   A      +  NE LF  D++ EN  +    +++      G  Y  
Sbjct: 244 SGSFGDQLATLKTLLADSETGMEGINELLFINDAI-ENLGLQTATLQLDVTLARGLNYYT 302

Query: 297 PMSATFKGADGKDHYVQMG-------SYGIGAMRVVAAVIESSHDGKGIIW-----PDSV 344
                    +G       G       +   G   +    I    D   ++          
Sbjct: 303 GAIFEVSAPEGVKMGSIGGGGRYADLTGIFGLKDMSGVGISFGLDRIYLVIEELGLFPEE 362

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW--D--DMGEQIGSQFAVADLLGF 400
           A   I +  +   DQ       +  ++L + G       D     +Q+  Q   A+    
Sbjct: 363 ATEGIKVFFVNFGDQEAG-YAMQAISKLRQAGISAELYPDAVTSNKQMKKQMTYANRRNI 421

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           P  V+ G + +   +  +K+   G +E ++++E++    
Sbjct: 422 PFLVLAGKEEMDAKQYTLKNMAEGSQETVNIDELVAALK 460


>gi|303231013|ref|ZP_07317756.1| serine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514395|gb|EFL56394.1| serine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
          Length = 426

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 67/204 (32%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +   ++ G  EM  P + + +    +G+   + ++M  + D     
Sbjct: 168 LGARLERALINFMVDLHVDKQGYTEMMTPYMVTRETLTGTGQLPKFAEDMYHVED---TE 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+     I S   LP  +      FR E     R   G++R  +F   +
Sbjct: 225 YFLIPTAEVTLTNYHSGEILSEDELPKYYTAFTACFRAEAGSAGRDTRGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLAD 215
                   +       K+  +   +   L L    +   +G I          E  + A 
Sbjct: 285 MVKLSKPEDSWNEL-EKLTDNAEEVLRLLELPFRVITLCTGDIGFGSAKTYDVEVWMPAQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     N  F
Sbjct: 344 NKYREISSCSNMTDFQARRANIKF 367


>gi|171057383|ref|YP_001789732.1| seryl-tRNA synthetase [Leptothrix cholodnii SP-6]
 gi|238689100|sp|B1Y0I6|SYS_LEPCP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|170774828|gb|ACB32967.1| seryl-tRNA synthetase [Leptothrix cholodnii SP-6]
          Length = 431

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 83/248 (33%), Gaps = 16/248 (6%)

Query: 16  RDAEIASHKLMLRTGMIHQHSKGIYSWLPLG--QKALDNVNAIIREEQ-NRTGAIEMSVP 72
           RD       L L      + S   +S+L  G   +    +   + + Q    G  E   P
Sbjct: 140 RDHVDLGAPLGLDFETSAKLSGARFSFL-KGPAARLHRALAQFMLDVQTQEHGYTECYTP 198

Query: 73  TLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            + + ++   +G+   + ++M  ++   D          T E  +T+  R  + +   LP
Sbjct: 199 YIVNREVLEGTGQLPKFKEDMFWVSRGGDETQPEQYLISTSEISLTNSVREQVLAADQLP 258

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E     R   G++R  +F   +      TPE S  +   M      + 
Sbjct: 259 IKLTAHSPCFRSEAGSAGRDTRGLIRQHQFDKVEMVQI-TTPEQSDAALESMVGHAEAVL 317

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            +LGL    +   +G +G   +     E  V A     ++    +   F      T F +
Sbjct: 318 QKLGLPYRVLLLSTGDMGFGSAKTYDLEVWVPAQATYREISSCSNCEAFQARRMQTRFKN 377

Query: 242 IISLNSIV 249
               N  V
Sbjct: 378 AQGKNEFV 385


>gi|330984183|gb|EGH82286.1| seryl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 425

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 77/245 (31%), Gaps = 18/245 (7%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHS---KG--IYSWLPLGQKALDNVNAIIREEQ-NRTGAI 67
            P D       L    GM         G           +    +   + +   +  G  
Sbjct: 134 VPVDHVKLGEDL---AGMDFTAGAELSGARFVVLKRHIARLHRALAQFMLDYHVDHHGYQ 190

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+  P L  A     +G+   + +++ ++A      +   PT E  +T++    I +  +
Sbjct: 191 EVYTPYLVGAQALRGTGQLPKFEEDLFKVARHGQADLYLIPTAEVTLTNLVADKILNEHD 250

Query: 128 LPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           LP         FR E         G++R  +F   +       P+ S  + + M     +
Sbjct: 251 LPIKMTAHTPCFRSEAGASGRDTRGLIRQHQFDKVEMVQI-AHPDNSMEALDSMTGHAEK 309

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSHEF----IVLADTGETQVFCSKDFMDFPIPSENTDF 239
           I   L L    ++  +G IG      F     V +     ++    +  DF        F
Sbjct: 310 ILQLLELPYRVVQLCAGDIGFSAVKTFDIEVWVPSQEKYREISSCSNCGDFQARRLQARF 369

Query: 240 DDIIS 244
            D  +
Sbjct: 370 RDTST 374


>gi|170017957|ref|YP_001728876.1| seryl-tRNA synthetase [Leuconostoc citreum KM20]
 gi|238688940|sp|B1MW28|SYS_LEUCK RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|169804814|gb|ACA83432.1| seryl-tRNA synthetase [Leuconostoc citreum KM20]
          Length = 436

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 8/171 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + +E  + G  EM  P + +      +G+Y  +  +  R+         
Sbjct: 179 GARLERAVYNFMLDEHRQEGYTEMITPIVVNDAAMFGTGQYPKFQDDAYRVE---GLEQT 235

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAY 161
           Y PT E  +T+ +        +LP  F  +   FR E         G++R  +F   +  
Sbjct: 236 YIPTAEVPLTNYYSGETLPAEDLPIKFTALSPSFRKEAGAAGKDTRGLIRLHQFNKVEMV 295

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            F    +  +     M  +   I  +LGL    +   +G +G   +  + V
Sbjct: 296 KFTKPEQSYEEL-ESMTANAENILQKLGLPYHVIMLSTGDMGFSAAKTYDV 345


>gi|12045139|ref|NP_072950.1| prolyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|255660459|ref|ZP_05405868.1| prolyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|1351169|sp|P47525|SYP_MYCGE RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|1045979|gb|AAC71505.1| prolyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|166078657|gb|ABY79275.1| prolyl-tRNA synthetase [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 483

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/448 (14%), Positives = 149/448 (33%), Gaps = 91/448 (20%)

Query: 24  KLMLRTGMI-HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG----------------- 65
           +L+++  +I H   KG   +L         +  +  +                       
Sbjct: 14  QLLVKAKLICHGEVKGTVCFLNNSWGLWMEIQQLYNDAIANKNQLSAIALTKFQPTTSFC 73

Query: 66  AI--EMSVPTLQ-SADLWVESGRYDSYGKEML----RLADRNDKAMIYGPTHEEVMTDIF 118
               ++ +PTL   ++   E      +  E+         + +  ++  PT E    +++
Sbjct: 74  YQVFQVQLPTLSFYSEYQKEKTHIKGFNPELFLINQVGQKQLNDPLVLRPTSEIAFCNLW 133

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
           +    SY +LP  + Q    FR E   R   +R+ EF  ++ +                 
Sbjct: 134 KKQELSYHDLPLIYNQWTQVFRAEKNTRP-FLRNSEFYWQETHGL--------------- 177

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                                          F+  + + +  +     + D  I      
Sbjct: 178 -------------------------------FVDQSQSEQAAISFWNLYQDLIIN--KLC 204

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
               + L S  E++     A +    E +    P+ +      ++       G  ++   
Sbjct: 205 IPAFVGLKSESEKFA---GAKNTWTIEAIM---PDGQ-----SLQCATSHDLGDTFTKSF 253

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLI-NIKAH 357
           + +++    +       S G+ + R++ A+  +  D  G++ P  +A  ++ L    K +
Sbjct: 254 TISYQSKTNQKMTPSSFSCGM-STRILGAIFLTHSDDYGLVLPWYLASKQVKLYLFDKNN 312

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           +   R     +   L K+     + ++  Q+G Q    ++ G PLQ+IV     ++  + 
Sbjct: 313 NPKTRALAFLVKDFLEKLKIRFSFIEINNQLGKQLLKGEIEGIPLQMIVD----NEKTIN 368

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNN 445
           I +RLT ++  ++   +     +  +N 
Sbjct: 369 IFNRLTRLKTSLTFANLQTEFVNLVNNY 396


>gi|88807545|ref|ZP_01123057.1| seryl-tRNA synthetase [Synechococcus sp. WH 7805]
 gi|88788759|gb|EAR19914.1| seryl-tRNA synthetase [Synechococcus sp. WH 7805]
          Length = 425

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 8/169 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    +   + +     G  E+  P L ++     SG+   + +E  R AD     + 
Sbjct: 173 GARLERALINFMLDLHTGKGYREVLPPVLVNSASLTGSGQLPKFAEESFRCAD---DDLW 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T + R  I     LP  +      FR E     R   G++R  +F   + Y
Sbjct: 230 LTPTAEVPLTSLHRDEIIPADQLPLRYVAYSPCFRREAGSYGRDTRGLIRLHQFNKVELY 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            F       +            +   L L    +   +G +G   +  +
Sbjct: 290 WFVHPDHAHEAHAAITAD-AEAVLQALELPYRVLELCTGDLGFSAARTY 337


>gi|293376411|ref|ZP_06622645.1| serine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325839304|ref|ZP_08166770.1| serine--tRNA ligase [Turicibacter sp. HGF1]
 gi|292644967|gb|EFF63043.1| serine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325490586|gb|EGC92901.1| serine--tRNA ligase [Turicibacter sp. HGF1]
          Length = 424

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 15/221 (6%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRY 86
           R G I         +  LG +    + + + +      G  E+  P + +      +G+ 
Sbjct: 154 RAGKI--TGSRFAVYKGLGARLERALISFMLDLHTGDHGYTEILPPVIVNRASMTGTGQL 211

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
             +  +  +L D         PT E  +T++ R  I S   LP  +      FR E    
Sbjct: 212 PKFEDDAFKLVDS---DYFLIPTAEVPVTNLHRDEILSADQLPIKYTAYSPCFRAEAGSA 268

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +   F    +  +     +  +  ++   LGL    +   +G I
Sbjct: 269 GRDTRGIIRQHQFNKVELVKFVKPEDSYQEL-ESLTANAEKVLQLLGLPYRVIELCTGDI 327

Query: 203 GGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           G   +     E  + +     ++    +F DF     N  F
Sbjct: 328 GFSAAKTYDIEVWLPSYNAYKEISSCSNFEDFQARRANIKF 368


>gi|148241646|ref|YP_001226803.1| seryl-tRNA synthetase [Synechococcus sp. RCC307]
 gi|166223304|sp|A5GRE1|SYS_SYNR3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|147849956|emb|CAK27450.1| Seryl-tRNA synthetase [Synechococcus sp. RCC307]
          Length = 425

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 8/176 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + +  G +    + + + +  +  G  E+  P L ++     SG+   + +E  R AD
Sbjct: 166 FITLMGDGARLERALISFMLDLHSTKGYTEVMPPILVNSASLTGSGQLPKFAEESFRCAD 225

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                +   PT E  +T + R  + +   LP  +      FR E     R   G++R  +
Sbjct: 226 ---DDLWLTPTAEVPLTSLHRDEVIAVEQLPLKYAAYTPCFRREAGSYGRDTRGLIRLHQ 282

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           F   + Y F    + ++            +   L L    +   +G +G   +  +
Sbjct: 283 FNKVELYWFCHPEKSAEAHEQLTLD-AEAVLEALELPYRRLELCTGDMGFSAARTY 337


>gi|325297897|ref|YP_004257814.1| seryl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
 gi|324317450|gb|ADY35341.1| seryl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
          Length = 424

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 79/223 (35%), Gaps = 15/223 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  L      +     G   +   G +    +     +E    
Sbjct: 133 METELPKDALPHWELAKKYNLIDFDLGVKITGAGFPVYRGQGARLQRALINFFLDEARAA 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PT+ +A     +G+      +M          +   PT E  +T+I+R  I  
Sbjct: 193 GYEEIMPPTVVNAASGYGTGQLPDKEGQMYHCNL---DDLYLIPTAEVPVTNIYRDVILD 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP         FR E     +   G+ R  EF   +    D TPE S+ S+ +M   
Sbjct: 250 EKQLPIKNCAYTECFRREAGSYGKDVRGLNRLHEFSKVELVRID-TPEHSRQSHQEMLDH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQV 221
              +  +L L    +R   G I       ++F V ++  +  +
Sbjct: 309 VEGLLKKLELPYRILRLCGGDISFTAAICYDFEVYSEAQKRWL 351


>gi|326440043|ref|ZP_08214777.1| histidyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 420

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/419 (15%), Positives = 119/419 (28%), Gaps = 20/419 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y  LP        V   I      +G   +  P  ++ +L+        D   KEM  
Sbjct: 9   GTYDLLPPDSATFLAVREAIAAPLKNSGYGYVETPGFEAVELFARGVGESTDIVTKEMYA 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSRE 154
              +    +   P     +           +  LP   +     +R E   +    R R 
Sbjct: 69  FETKGGTKLALRPEGTASVLRAALEANLHKQGVLPVKLWYSGSYYRYEKPQKG---RYRH 125

Query: 155 FLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFI 211
           F    A       P            +Y  +  R     +    +    P+  +   EF+
Sbjct: 126 FSQVGAEAIGAEDPALDAELIILADQAYRSLGLRHFRILLNSLGDQECRPVYREALQEFL 185

Query: 212 VLADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
              D  E      ++   +   D                +S+ +   A +    ++  E 
Sbjct: 186 RGLDLDEETRRRVEINPLRVLDDKRPEVRRQLTGAPSLRDSLCDGCRAYHQEVRELLTEA 245

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                 + K V          F F        SA   G  G+   +     G     V  
Sbjct: 246 GVSFEDDEKLVRGLDYYTRTTFEFVHDGLGSQSA--VGGGGRYDGLSEMLGGPALPSVGW 303

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD--M 384
           A+              S+     + +      +  R A   +  RL + G    +     
Sbjct: 304 ALGVDRTVLALQAEGVSLELPPATSVFAVPLGEEARRALFGVVTRLRRAGVAADFAYGGR 363

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G + G+   VA   G    V+ G + +++  V++K+  +G +  + L  V++      +
Sbjct: 364 GLK-GAM-KVAHRSGARYTVVAGERDLAEGVVQLKNMESGEQRPVPLSTVVDELGALLA 420


>gi|294811572|ref|ZP_06770215.1| histidyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|294324171|gb|EFG05814.1| histidyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 426

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/419 (15%), Positives = 119/419 (28%), Gaps = 20/419 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y  LP        V   I      +G   +  P  ++ +L+        D   KEM  
Sbjct: 15  GTYDLLPPDSATFLAVREAIAAPLKNSGYGYVETPGFEAVELFARGVGESTDIVTKEMYA 74

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN-LPFTFYQIQLKFRDELRPRFGVMRSRE 154
              +    +   P     +           +  LP   +     +R E   +    R R 
Sbjct: 75  FETKGGTKLALRPEGTASVLRAALEANLHKQGVLPVKLWYSGSYYRYEKPQKG---RYRH 131

Query: 155 FLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFI 211
           F    A       P            +Y  +  R     +    +    P+  +   EF+
Sbjct: 132 FSQVGAEAIGAEDPALDAELIILADQAYRSLGLRHFRILLNSLGDQECRPVYREALQEFL 191

Query: 212 VLADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
              D  E      ++   +   D                +S+ +   A +    ++  E 
Sbjct: 192 RGLDLDEETRRRVEINPLRVLDDKRPEVRRQLTGAPSLRDSLCDGCRAYHQEVRELLTEA 251

Query: 267 LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                 + K V          F F        SA   G  G+   +     G     V  
Sbjct: 252 GVSFEDDEKLVRGLDYYTRTTFEFVHDGLGSQSA--VGGGGRYDGLSEMLGGPALPSVGW 309

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD--M 384
           A+              S+     + +      +  R A   +  RL + G    +     
Sbjct: 310 ALGVDRTVLALQAEGVSLELPPATSVFAVPLGEEARRALFGVVTRLRRAGVAADFAYGGR 369

Query: 385 GEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           G + G+   VA   G    V+ G + +++  V++K+  +G +  + L  V++      +
Sbjct: 370 GLK-GAM-KVAHRSGARYTVVAGERDLAEGVVQLKNMESGEQRPVPLSTVVDELGALLA 426


>gi|196251172|ref|ZP_03149848.1| seryl-tRNA synthetase [Geobacillus sp. G11MC16]
 gi|196209313|gb|EDY04096.1| seryl-tRNA synthetase [Geobacillus sp. G11MC16]
          Length = 424

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 9/177 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P L +    + +G+   + ++     
Sbjct: 163 FVFYKGLGARLERALINFMLDIHLDEFGYQEVLPPYLVNRASMIGTGQLPKFAED---AF 219

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             +++     PT E  +T++ R  I +  +LP  +      FR E     R   G++R  
Sbjct: 220 HLDNEDYFLIPTAEVPVTNLHRDEILTADDLPLYYAAYSACFRAEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           +F   +   F    +               I  RLGL    +   +G +G   +  +
Sbjct: 280 QFNKVELVKFVKPEDSYDELEKLTHQ-AETILQRLGLPYRVVALCTGDLGFSAAKTY 335


>gi|329957008|ref|ZP_08297576.1| serine--tRNA ligase [Bacteroides clarus YIT 12056]
 gi|328523765|gb|EGF50857.1| serine--tRNA ligase [Bacteroides clarus YIT 12056]
          Length = 424

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 15/223 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  L      +     G   +   G +    +     +E  ++
Sbjct: 133 METELPKDALPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARKS 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PT+ +A     +G+      +M          +   PT E  +T+I+R  I  
Sbjct: 193 GYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCE---VDDLYLIPTAEVPVTNIYRDVILD 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M   
Sbjct: 250 EKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRIDK-PEHSKESHQEMLNH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQV 221
              +  +L L    +R   G +        +F V ++  +  +
Sbjct: 309 VEGLLQKLELPYRILRLCGGDMSFTAALCFDFEVYSEAQKRWL 351


>gi|324505156|gb|ADY42221.1| Glycyl-tRNA synthetase [Ascaris suum]
          Length = 754

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/382 (12%), Positives = 100/382 (26%), Gaps = 32/382 (8%)

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           +  E+                 E  +    ++H K  +   +         + + RP   
Sbjct: 353 FRNEISPRQGLIRVREFTMCEIEHFVDPNDKNHPKFAKVRDYELTLFSACNQMDGRPAEV 412

Query: 149 VMRSREFLM-------KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
               R              Y   +     K   +   + + +              ++  
Sbjct: 413 CTIGRAVDQHTVANETLGYYMVRVHQFLVKVGVDPRRLRFRQHLANEMAHYACDCWDAEI 472

Query: 202 IGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD------------------DII 243
           +      E +  AD     +       +  + +E    +                     
Sbjct: 473 LTSYGWIECVGNADRACFDLQQHYKATNVKLTAEKKLPEPKTVQITEVVPNKGLIGKAFK 532

Query: 244 SLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARG-IEVGHIFYFGTKYSLPMSATF 302
           +    V    A  +       E+ F+S  +       G  E+G       +Y   +    
Sbjct: 533 ANAKQVMSRLAELSPKEVEALEQEFESAGKAILAYEGGEAELGADMMSVKRYEKKVHVEE 592

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI--KAHDQV 360
                 +    +G      +       E       +  P  +AP K S++ I      + 
Sbjct: 593 ITPSVIEPSFGVGRIMYAVLEHSFRQREGDEQRTFLTLPPQIAPIKCSVLPISANVKLEP 652

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIK 419
              A  ++   L+K       DD    IG ++A  D +G P  V V  +       V ++
Sbjct: 653 ILAAVREV---LAKHEISFKQDDSSGSIGRRYARTDEIGIPFGVTVDFESEKQPWTVTLR 709

Query: 420 HRLTGIREDMSLEEVINYASHR 441
           + LT  +  + + E+       
Sbjct: 710 YALTMEQVRLQVSELGKTVHDL 731



 Score = 51.7 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 10/102 (9%)

Query: 11  LQENPRDA---EIASHKLMLRTGMIHQHSK------GIYSWLPLGQKALDNVNAIIREEQ 61
           L+  P++A    +    L+ R     Q         G+Y + P+G     N+  + R+  
Sbjct: 133 LELAPKEAAFDRLKLEDLLRRRFFYDQSFAIYGGVTGLYDFGPMGCAMKANMIDLWRKHF 192

Query: 62  N-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
               G +E+    L    +   SG  D +   M++     + 
Sbjct: 193 ILEEGMLEVDCSVLTPEPVLKASGHVDRFADWMVKDVKTGEC 234


>gi|298491543|ref|YP_003721720.1| seryl-tRNA synthetase ['Nostoc azollae' 0708]
 gi|298233461|gb|ADI64597.1| seryl-tRNA synthetase ['Nostoc azollae' 0708]
          Length = 426

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 68/207 (32%), Gaps = 12/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   +  +  + G IE+S P L + D    +G+   + +E  + AD     + 
Sbjct: 175 GAALERALIQFMLSKHIQAGYIEVSPPLLVNTDSLTGTGQLPKFAEESFKCAD---DELW 231

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMRSREFLMKDAY 161
             PT E  +T+ +R  I +   LP         FR E         G++R  +F   +  
Sbjct: 232 LIPTAEVPVTNFYRGEIINAEELPIYHCAYTPCFRREAGSYGRDMRGLIRLHQFNKVELV 291

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                         K+  S   I   L L    +   +  +G   +     E  +   + 
Sbjct: 292 KLVKPENSFDEL-EKLVESAESILQALKLPYRVINLCTADVGFGATKTYDLEVWLPYSSK 350

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF     +  F +   
Sbjct: 351 YREISSCSNCGDFQARRADIRFKEAGK 377


>gi|319901328|ref|YP_004161056.1| seryl-tRNA synthetase [Bacteroides helcogenes P 36-108]
 gi|319416359|gb|ADV43470.1| seryl-tRNA synthetase [Bacteroides helcogenes P 36-108]
          Length = 424

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 80/223 (35%), Gaps = 15/223 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  +      +     G   +   G +    +     +E   +
Sbjct: 133 MENELPKDALPHWELTKKYDIIDFDLGVKITGAGFPVYKGKGARLQRALINFFLDEARTS 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PT+ +A     +G+      +M          +   PT E  +T+I+R  I  
Sbjct: 193 GYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCE---VDDLYLIPTAEVPVTNIYRDVILD 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M   
Sbjct: 250 EKQLPIKNCAYTECFRREAGSYGKDVRGLNRLHEFSKVELVRIDK-PEHSKQSHQEMLDH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPI--GGDLSHEFIVLADTGETQV 221
              +  +L L    +R   G +     + ++F V ++  +  +
Sbjct: 309 VEGLLKKLELPYRILRLCGGDMSFTSSICYDFEVYSEAQKRWL 351


>gi|189459794|ref|ZP_03008579.1| hypothetical protein BACCOP_00423 [Bacteroides coprocola DSM 17136]
 gi|189433494|gb|EDV02479.1| hypothetical protein BACCOP_00423 [Bacteroides coprocola DSM 17136]
          Length = 424

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 77/223 (34%), Gaps = 15/223 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  L      +     G   +   G +    +     +E    
Sbjct: 133 METELPKDALPHWELAKKYDLIDFDLGVKITGAGFPVYKGQGARLQRALINFFLDEARAA 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PT+ +A     +G+      +M          +   PT E  +T+I+R  I  
Sbjct: 193 GYEEIMPPTVVNAASGYGTGQLPDKEGQMYHCNL---DDLYLIPTAEVPVTNIYRDVILD 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M   
Sbjct: 250 EKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRIDK-PEHSKQSHQEMLDH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQV 221
              +  +L L    +R   G +        +F V ++  +  +
Sbjct: 309 VEGLLQKLELPYRILRLCGGDMSFTAALCFDFEVYSEAQKRWL 351


>gi|162147698|ref|YP_001602159.1| histidyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542322|ref|YP_002274551.1| histidyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|189082297|sp|A9HJ49|SYH_GLUDA RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|161786275|emb|CAP55857.1| Histidyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209529999|gb|ACI49936.1| histidyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 415

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/391 (13%), Positives = 106/391 (27%), Gaps = 29/391 (7%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G  E + P  +   ++  S     D   KEM    DR  +++   P     +     ++
Sbjct: 35  YGFDEWATPIFEDTRVFARSLGDTSDVVSKEMYSFEDRGGESLTLRPEGTAGVCRALVTN 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDLTPEGSKHSYNKMFVS 180
             + ++LP   +     FR E   +    R R+F    A       P     +       
Sbjct: 95  GLT-QSLPQKVFYAGPMFRYERPQKG---RYRQFHQIGAELIGAAEPLADAEAIAMGRDV 150

Query: 181 YLR---------IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                         + LG         +  IG        +  D+           +D  
Sbjct: 151 LKALGIADETILDLNTLGDTESRAAWRTALIGYFTECRDQLSDDSRARLERNPLRILDSK 210

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP-ENKRVSARGIEV--GHIF 288
            P +     D   + + +      +     + +      +P        RG++      F
Sbjct: 211 APQDRALVADAPRIGAFLTPEAVAF--WDGLRSALDLMGVPFRENPGIVRGLDYYGHTAF 268

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
            F T+          G        +MG     A+     +   S                
Sbjct: 269 EFVTERLGAQGTVLAGGRYDGLVAEMGGPRTPAIGWAGGIERLSMLLDATPAAPRPVAVV 328

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
                     +    A   +   L   G        G     +   A+ +G    V++G 
Sbjct: 329 PMG-------EGAMGAAILLLQALRAGGVRAEIAYRGNT-KKRLERANRIGATHAVLIGE 380

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             V+    ++K    G + +++L+ V  Y +
Sbjct: 381 DEVARGVAQVKALDDGSQAELALDAVTPYLA 411


>gi|297155794|gb|ADI05506.1| histidyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1]
          Length = 420

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/419 (14%), Positives = 118/419 (28%), Gaps = 22/419 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G Y  +P        V   I     R+G   +  P  ++ +L+        D   KEM  
Sbjct: 9   GTYDLIPPDSATYLAVRDAIAAPLKRSGYGYVETPGFENVELFARGVGESTDIVTKEMYT 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
           L  +    +   P     +             NLP   +     +R E   +    R R 
Sbjct: 69  LTTKGGDQLALRPEGTASVLRAALEANLHKAGNLPVKLWYSGSYYRYERPQKG---RYRH 125

Query: 155 FLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLK--SIPMRAESGPIGGDLSHEFI 211
           F    A       P            +Y  +  R      +    A   P       +F+
Sbjct: 126 FSQVGAEAIGAEDPALDAELIILAHDAYRSLGLRNFRILLNSLGDATCRPAYRAALQDFL 185

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
              +  +            P+   +   + +                    ++E++ + L
Sbjct: 186 RGLELDDDTRRRIDI---NPLRVLDDKREAVQKQLVGAPMLGDHLCEACKEYHEQVRELL 242

Query: 272 P------ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                  E+     RG++      F   +    S +  G  G+   +     G     V 
Sbjct: 243 TAEGVAFEDDPKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGPALPSVG 302

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
            A+               +     + +      +  R         L + G    +   G
Sbjct: 303 WALGVDRTVLALEAEGVELDLPSATSVFAVPLGEEARRVLFGAVTGLRRAGVATDFAYGG 362

Query: 386 EQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           +  G +     A+  G  L VI G + +++  V++K   +G +  + L+ ++   S R 
Sbjct: 363 K--GVKAAMKAANRSGARLAVIAGERDLAEGVVQLKDLESGEQTAVPLDGLVEAVSARL 419


>gi|260434791|ref|ZP_05788761.1| seryl-tRNA synthetase [Synechococcus sp. WH 8109]
 gi|260412665|gb|EEX05961.1| seryl-tRNA synthetase [Synechococcus sp. WH 8109]
          Length = 425

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 8/176 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + +  G +    +   + +     G  E+  P L ++     SG+   + +E  R   
Sbjct: 166 FVTLMGQGARLERGLINFMLDLHTSKGYREVLPPVLVNSASLTGSGQLPKFAEESFRC-- 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  I     LP  +      FR E     R   G++R  +
Sbjct: 224 -AEDDLWLTPTAEVPVTSLHRDEIIPADQLPLRYAAYSPCFRREAGSYGRDTRGLIRLHQ 282

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           F   + Y F   P+ S+ ++ ++      +   L L    +   +  +G      +
Sbjct: 283 FNKVELYWFVH-PDQSEEAHQQITADAEAVLQALELPYRVLDLCTADLGFSARRTY 337


>gi|288818895|ref|YP_003433243.1| seryl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288788295|dbj|BAI70042.1| seryl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308752482|gb|ADO45965.1| seryl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
          Length = 424

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 69/213 (32%), Gaps = 12/213 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           +G K    +   + +   + G +E+  P L    +   +G+   + +E+ R        +
Sbjct: 170 MGAKLERALINFMLDMHAKKGYVEIMPPHLVKPQVLEGTGQLPKFEEELYRCE---RDEL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMRSREFLMKDA 160
              PT E  +T++FR  I     LP         +R E         G++R  +F   + 
Sbjct: 227 YLIPTAEVPLTNLFRDEILREDQLPIYLTSYTPCYRREAGAYGKDIRGIIRQHQFNKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADT 216
                  +  +     +      I   L L    +   +G +G         E    + +
Sbjct: 287 VKIVKPEDSYREL-EGLTSDAEDILRALELPYRVVLLCTGDMGFSSAKTYDIEVWFPSQS 345

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              +V    +  +F      T + D    N  V
Sbjct: 346 RYREVSSCSNCEEFQARRMGTRYKDQKGRNIYV 378


>gi|228992057|ref|ZP_04151993.1| Histidyl-tRNA synthetase 1 [Bacillus pseudomycoides DSM 12442]
 gi|228767786|gb|EEM16413.1| Histidyl-tRNA synthetase 1 [Bacillus pseudomycoides DSM 12442]
          Length = 441

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 61/434 (14%), Positives = 122/434 (28%), Gaps = 40/434 (9%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     E   R G   +  PTL   +L   + G      KEM  L D+
Sbjct: 14  DYLPAEQLLRNKIKCACEETFERYGCKPLETPTLNMYELMAYKYGGGAEILKEMYTLRDQ 73

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
            ++ +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 74  GNREIALRYDLTIPFAKVVA--MNPDIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 128

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                +    ++       F  +  +   + ++    +  +G +      +     +   
Sbjct: 129 VDIVGVESVIAEAELMAMAFDLFKTLNLDVTIQYNNRKLLTGILKSVEIQD-----EQTN 183

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA---------TSDVHNEKLFD 269
             +          I     D      +N  +E       +              N  + +
Sbjct: 184 DVILSLDKLEKIGIDGVRKDLQSRGIVNDTIEVVCHTVESCMTLELNEFKQIFSNSLVTE 243

Query: 270 SLPENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + E +++       GI+   +F       L M                 S G G  R  
Sbjct: 244 GINELQQLQQYLLALGIQDNTVFNPFLARGLTMYTGTVYEIFLTDGSITSSIGSGG-RYD 302

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLS 373
             +    +D              +    +   +     A            C +I   L 
Sbjct: 303 NIIGAFRNDNTSYPTVGISFGLDVIYTALTQKETESTCADIFIIPINTEVECLRITQLLR 362

Query: 374 KVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                 V  +  G ++      A+    P  +I+G   +S   + +++   G    + L 
Sbjct: 363 SKSTFKVELELAGRKLKRSLNYANKENIPYVLIIGDTEISTETIVLRNMKEGTEIKLPLS 422

Query: 433 EVIN-YASHRFSNN 445
            + +      F  +
Sbjct: 423 CIEDGTLKDYFKKS 436


>gi|15220974|ref|NP_173251.1| tRNA synthetase-related / tRNA ligase-related [Arabidopsis
           thaliana]
 gi|332191556|gb|AEE29677.1| class II aaRS and biotin synthetase domain-containing protein
           [Arabidopsis thaliana]
          Length = 165

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 58/157 (36%), Gaps = 12/157 (7%)

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F+   ++ L  SA        +  V +    + ++  + A++   + GK   W       
Sbjct: 19  FHLRDRFKLEYSAE--NETMIERSVLIHRAVLSSVERLFAILLEQYKGKFPFW------L 70

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
                 + +  +  R   +K+  ++ + G  V  D     +  +   A +  +   ++VG
Sbjct: 71  SPRQAIVCSVSEDYRSYADKVRDQIHEAGYYVDVDTTDRNVSDKVQEAQVAHYNYILVVG 130

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            +     +V +  R     E MS+E + +    + +N
Sbjct: 131 DEEARTGQVTVWLRD----EMMSIETLSDEFKLKTAN 163


>gi|10442117|gb|AAG17334.1|AF265558_1 threonyl tRNA synthetase [Mycobacterium smegmatis]
          Length = 89

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 8/73 (10%), Positives = 21/73 (28%)

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              G  V  D   +++  +      +  P  ++ G K      V  +         +  +
Sbjct: 1   KSRGVRVEVDSSDDRMAKKIVNHTNMKVPFMLLAGDKDAEAGAVSFRLGDRTQINGVPRD 60

Query: 433 EVINYASHRFSNN 445
           E +       ++ 
Sbjct: 61  EAVEMIVRWIADR 73


>gi|291387473|ref|XP_002710302.1| PREDICTED: histidyl-tRNA synthetase 2-like [Oryctolagus cuniculus]
          Length = 506

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/461 (9%), Positives = 117/461 (25%), Gaps = 51/461 (11%)

Query: 33  HQHSKGIYSWLPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           HQ +       P G +          + +  ++     R GA  +  P  +  ++  E  
Sbjct: 49  HQETPNFIIKTPKGTRDFSPQQMVVREKILDVVVSCFKRHGAQGLDTPAFELKEMLTE-- 106

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
            Y      +  L D+  + +                +              + +    ++
Sbjct: 107 NYGENSGLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLKKMKRYHVGKVWRRESPAIVQ 166

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
            R+      +F +   +   +          ++          + +    +      + G
Sbjct: 167 GRYREFCQCDFDIAGQFDPMIPDAECLKIICEILSGLQLGNFLIKVNDRRIIDGVFAVCG 226

Query: 205 DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV-- 262
               +F V+  + +         +   + ++     ++        Q     +    +  
Sbjct: 227 VPESKFRVICSSIDKLDKMPWTDVRHEMVTKKGLAPEVADRIGDYVQCHGGVSLVEQLFQ 286

Query: 263 -----HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFK-------------- 303
                 N++  + L + K +       G         SL     +               
Sbjct: 287 DPRLSQNKQALEGLRDLKLLFEYLTLFGITDKISFDLSLARGLDYYTGVIYEAVLLQTPA 346

Query: 304 ------------------GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
                                      +        + +    I    + +     + + 
Sbjct: 347 QAEEEPLNVGSVAAGGRYDELVAMFDPKGHKVPCVGLSIGVERIFYIVEQRMKALGEKIR 406

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQV 404
             +  +          ++   K+ A L   G           ++ SQ    +  G PL V
Sbjct: 407 ATETQVFVATPQKNFLQER-LKLIAELWDAGIKAEMPYKNNPKLLSQLHYCENTGIPLVV 465

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           I+G + + +  V+I+   +     +  E+++     R S +
Sbjct: 466 IIGEQELKEGVVKIRSVASRGEVAVKREDLVTEIQKRLSES 506


>gi|224146257|ref|XP_002325939.1| predicted protein [Populus trichocarpa]
 gi|222862814|gb|EEF00321.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/447 (13%), Positives = 125/447 (27%), Gaps = 58/447 (12%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSAD---------------L 79
           LP G +          +   +II +   R GA  +  P  +  +               L
Sbjct: 98  LPKGTRDFANEQMVIRERAFSIIADVFKRHGATSLDTPAFELRETLMGKYGEDSKLIYDL 157

Query: 80  WVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF 139
             + G   S   ++     R              +  ++R    S       +       
Sbjct: 158 ADQGGELCSLRYDLTVPFARYVAMNGITSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIA 217

Query: 140 --RDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI--PM 195
              +E+ P F +++    L+ +    D   + +        +    +             
Sbjct: 218 GQYEEMGPDFEIVKVLTELLDELDIGDYEVKLNHRKLLDGMLEICGVPPEKFGTICSSID 277

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
           + +                   ET         +   P E              E     
Sbjct: 278 KLDKQSFEQVKKEMVEEKGLAVETADRIGTFVKEKDSPKELL----SKLKQEGSEFLQNA 333

Query: 256 YAATSDVHNEKLFDSLPENKRVSA--------RGIEVGH------IFYFGTKY-SLPMSA 300
            ++ +    E LFD+L  +K +          RG++         +F   T+  S+    
Sbjct: 334 SSSRALDELEILFDALERSKCIDKVVFDLSLARGLDYYTGVIFEAVFKGTTQVGSIAAGG 393

Query: 301 TFKGADGKDHYVQMGSYGI--GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
            +    G      + + G+  G  RV A + +   D      P         + N     
Sbjct: 394 RYDNLIGMFGSKPVPAVGVSLGIERVFAIMEQLQKDRNETTRPTETQVLLGIMGNKSK-- 451

Query: 359 QVCRDACEKIYARLSKVGCDVF--WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKV 416
                   ++ ++L               ++I    + A+    P  V+V  + +   KV
Sbjct: 452 ---IPLAAELTSKLWSAKLKAEFVVSTRFDKI---ISRANDSKIPWMVLVRDRELETGKV 505

Query: 417 EIKHRLTGIREDMSLEEVINYASHRFS 443
           +I++  T I E++ L   ++   +R +
Sbjct: 506 KIRNLETKIEEEVPLSAFVDEVKNRLN 532


>gi|121604775|ref|YP_982104.1| histidyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
 gi|120593744|gb|ABM37183.1| histidyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
          Length = 456

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 65/424 (15%), Positives = 120/424 (28%), Gaps = 37/424 (8%)

Query: 32  IHQHSK--GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-D 87
           I + +   G+   LP      + +   +R    R     +  P L+   L+V   G   D
Sbjct: 18  IEKLAAVKGMNDILPPDSARWEWLEDKVRGLMGRYAYRNIRTPILEHTQLFVRGIGEVTD 77

Query: 88  SYGKEMLRLADRNDKAMIYGP-THEEVMTDIFRSHIKSYRNL---PFTFYQIQLKFRDEL 143
              KEM    DR+DK   +   T     T      +  +  L       Y +   FR E 
Sbjct: 78  IVEKEMYSFEDRSDKHGDHDHLTMRPENTASVVRAVTEHNLLYDGGKRLYYMGPMFRRER 137

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG 203
             R    R R+F    A +             ++ +    ++  LGL    +   S    
Sbjct: 138 PQRG---RYRQFHQIGAEALGFAGP---EVDAELILLAAALWKELGLTDWRLEINSLGQP 191

Query: 204 GD---------LSHEFIVLADTGETQVFCSKD---FMDFPIPSENTDFDDIISLNSIV-- 249
            +            E    A   E +     +    +D   P+     +    L   +  
Sbjct: 192 EERAQHRAQLIAHFEQHADALDEEARRRLHSNPLRILDTKNPAMKAVVESAPRLIDFLGS 251

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKD 309
           +         + +    +  +L   + V         +F F T     + A      G  
Sbjct: 252 QSLAHFEGLKAILDANSIPWTLNH-RLVRGLDYYNLTVFEFVTDR---LGAQGTICAGGR 307

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
           +   +   G      V   +      + I    ++    +        +        +  
Sbjct: 308 YDYLIEQMGGKPAPAVGWALGVERVLELIKEQGALVEHPVPDAYAVIPEASALPVVLQTL 367

Query: 370 ARLSKVGCDVFWDDM--GEQIGSQ---FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG 424
             L   G  V        E +GS    F  AD  G    +I G+  +++ +V +K   + 
Sbjct: 368 QALRAAGISVQMHASATPEGMGSMKSQFKRADGSGARFALIFGADELAEGRVAVKPLRSE 427

Query: 425 IRED 428
               
Sbjct: 428 KAGS 431


>gi|313665727|ref|YP_004047598.1| serine--tRNA ligase [Mycoplasma leachii PG50]
 gi|312949962|gb|ADR24558.1| serine--tRNA ligase [Mycoplasma leachii PG50]
          Length = 422

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 83/245 (33%), Gaps = 14/245 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K + ++  ++ +   + G  E+  P + +  + + +G+   + ++M ++    
Sbjct: 168 IYTGLGSKLVRSIADVLLKRHEKHGYKEIFCPLIVNKSVMLGTGQLPKFSEDMYQV---- 223

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
                  PT E  +T++  + I +Y  LP  +      FR E     R   G++R  +F 
Sbjct: 224 -GEQYLIPTSEVPLTNLHANEILTYDVLPLKYTSFTQCFRQEAGSAGRDTKGMIRLHQFN 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +        E        +      + +   L    +   SG IG   +     E   
Sbjct: 283 KVELVKIVHPEESMNEL-EMLIKDAEDVLNMFDLPYRVVELCSGDIGFSSAKTYDLEVWF 341

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                  ++    +  DF   +  T F D  S   +V        A   +    L +   
Sbjct: 342 PEQNKYREISSCSNCTDFQARNMQTRFKDKDSKIKLVHTLNGSGVAVDRLIAAILENYWD 401

Query: 273 ENKRV 277
             K +
Sbjct: 402 GEKLI 406


>gi|254883595|ref|ZP_05256305.1| histidyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|319642337|ref|ZP_07996995.1| histidyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
 gi|254836388|gb|EET16697.1| histidyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|317386060|gb|EFV66981.1| histidyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
          Length = 454

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 1/99 (1%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
               A     L+ +   D+     C  I A++ + G          ++  Q   A+    
Sbjct: 356 YPKEAVNGTELLFVNFGDKEA-AYCLPILAKVREAGVRAEIYPDASKMKKQMGYANDKQI 414

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           P   IVG   +++ K+ +K+  TG +  ++ +E++    
Sbjct: 415 PFVAIVGENEMNEGKLTLKNMTTGEQSLVTPDELLAVVK 453


>gi|329962119|ref|ZP_08300130.1| serine--tRNA ligase [Bacteroides fluxus YIT 12057]
 gi|328530767|gb|EGF57625.1| serine--tRNA ligase [Bacteroides fluxus YIT 12057]
          Length = 424

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 80/223 (35%), Gaps = 15/223 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  L      +     G   +   G +    +     +E  ++
Sbjct: 133 METELPKDALPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARKS 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PT+ +A     +G+      +M          +   PT E  +T+I+R  I  
Sbjct: 193 GYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCE---VDDLYLIPTAEVPVTNIYRDVILD 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M   
Sbjct: 250 EKQLPVKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRIDK-PEHSKQSHQEMLDH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPI--GGDLSHEFIVLADTGETQV 221
              +  +L L    +R   G +     L  +F V ++  +  +
Sbjct: 309 VEGLLQKLELPYRILRLCGGDMSFTSALCFDFEVYSEAQKRWL 351


>gi|296314654|ref|ZP_06864595.1| histidine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
 gi|296838563|gb|EFH22501.1| histidine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
          Length = 431

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/430 (13%), Positives = 111/430 (25%), Gaps = 31/430 (7%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVNRWTRAYGYQQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 P----RFGVMRSREFLMKDAYSFDLTPEGSKH--SYNKMFVSYLRIFHRLGLKSIPMRAE 198
                R       E L  +    D                  YL +            A 
Sbjct: 126 QKGRYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREERAAH 185

Query: 199 SGPIGGDL-SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL-NSIVEQWTAPY 256
              +   L  +E  +  D+           +D   P      +    L + + E     Y
Sbjct: 186 RAALVTYLTRYEDKLDEDSKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEASQKHY 245

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIF-----YFGTKYSLPMSATFKGADGKDHY 311
           A    + +      +   + V         +F       G + ++     + G   +   
Sbjct: 246 ARFKAMLDGLDIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIEELGG 305

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
               S G         ++ S +    +     V             D             
Sbjct: 306 KPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA----QA 357

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMS 430
           L     +V      + + +Q   AD  G    +IV    +++  V +K       ++ ++
Sbjct: 358 LRAQDFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGAHGQQTVA 417

Query: 431 LEEVINYASH 440
            E++ +    
Sbjct: 418 AEDLTHTLQQ 427


>gi|29374751|ref|NP_813903.1| seryl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227555780|ref|ZP_03985827.1| seryl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|257418758|ref|ZP_05595752.1| seryl-tRNA synthetase [Enterococcus faecalis T11]
 gi|46577438|sp|Q839Q8|SYS1_ENTFA RecName: Full=Seryl-tRNA synthetase 1; AltName: Full=Serine--tRNA
           ligase 1; Short=SerRS 1; AltName:
           Full=Seryl-tRNA(Ser/Sec) synthetase 1
 gi|29342209|gb|AAO79975.1| seryl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227175076|gb|EEI56048.1| seryl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|257160586|gb|EEU90546.1| seryl-tRNA synthetase [Enterococcus faecalis T11]
          Length = 423

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 76/214 (35%), Gaps = 13/214 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++    +  
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQV---AESD 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F       +        +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFSDAEHSYEELEKMT-NNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
               ++    +  DF        + D        
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGHVQYA 378


>gi|260891941|ref|YP_003238038.1| seryl-tRNA synthetase [Ammonifex degensii KC4]
 gi|260864082|gb|ACX51188.1| seryl-tRNA synthetase [Ammonifex degensii KC4]
          Length = 427

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 9/166 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG      +   + +      G  E+  P L + +  V +G+   + ++M ++ 
Sbjct: 163 FVFYRGLGAALERALINFMLDLHTREHGYEEVFPPFLVNRESMVGTGQLPKFAEDMFKVE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
               +     PT E  +T++ R  I     LP  +      FR E     R   G++R  
Sbjct: 223 ---GEDFYLIPTAEVPVTNLHREEILDGGQLPLKYVAYSACFRAEAGAAGRETRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           +F   +   F   PE S+    K+      +  RLGL    +   +
Sbjct: 280 QFNKVELVKFCR-PEQSEEELEKLVADAEEVLKRLGLPYRVVVLCT 324


>gi|146305013|ref|YP_001192329.1| histidyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
 gi|172046974|sp|A4YJ03|SYH_METS5 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|145703263|gb|ABP96405.1| histidyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
          Length = 430

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/417 (14%), Positives = 132/417 (31%), Gaps = 34/417 (8%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYG 107
           K +  + +  RE   + G  E   P ++  +L+   G  +     M    D+ ++ +   
Sbjct: 19  KIIRWIESNFRETVEKAGYKEAMTPIVEDFELFSLKG-GEELRNTMYVFKDKGEREVALR 77

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP---RFGVMRSREFLMKDAYSFD 164
           P     +  ++ + ++ Y      FY  ++   DE +    R       E L  D+   D
Sbjct: 78  PEITPSIVRLYLNSLQHYPKPLRIFYIGRVYRYDEPQQGRYREFRQAGVELLGSDSILAD 137

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL---------AD 215
           +       ++ +      +I  ++    I     +     +   E ++          A+
Sbjct: 138 IEVLHLLENFYRRINLKDKISLKINNIGIFRIIFNKLSFDEQVQEHLLHLLDKGKIEEAE 197

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA-TSDVHNEKLF------ 268
               +       +   I +  T+   +    ++ E      +   +++ N KL       
Sbjct: 198 KILDEKIRDNSKIRQFIYTLITNGRSLKLEEAMREAEKTELSELVNEIENLKLISEILSS 257

Query: 269 ---DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
              D + +   V       G IF    +        F  A G  +   +  YG      V
Sbjct: 258 LNLDHIVDLGFVRGLAYYTGPIFEVVKR-----DLPFSIAGGGRYDSLVEVYGGNRTPAV 312

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMG 385
              I        +            L+ + A D+        I + L   G     ++  
Sbjct: 313 GFAIGIERTMYALNKDGIKFDSNAPLVAVVALDRSVIPHALSIVSMLRDKGFITVLNNKE 372

Query: 386 EQIGS---QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
             +      +A     GF   +I+G K ++  KV +++ +   +    ++E+ N  +
Sbjct: 373 IPLSKLVPLYAE---QGFTHLIIMGQKEITSGKVTVRNLVKREQITTDVKELTNVIT 426


>gi|255658869|ref|ZP_05404278.1| serine--tRNA ligase [Mitsuokella multacida DSM 20544]
 gi|260849274|gb|EEX69281.1| serine--tRNA ligase [Mitsuokella multacida DSM 20544]
          Length = 426

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 65/208 (31%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +        + +   N+ G  EM  P + + +    +G+   +  +M +L   
Sbjct: 164 FYKGLGARLERACINFMMDLHANKHGYTEMLAPYIANKESMTGTGQLPKFADDMFKLE-- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E   T+  R  I     LP  +      FR E     R   G++R  +F
Sbjct: 222 -GLDYYLVPTAEVPTTNYHRDEILDGNKLPEYYSCYTACFRAEAGSAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG----DLSHEFI 211
              +   F           + M  +   +   L L    ++  +G +          E  
Sbjct: 281 NKVELIKFVKPETSWHEL-DTMVDAAEDVLRLLELPYHVVKLCTGDMSFTSATTYDLEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
             A     ++    +  D+     N  F
Sbjct: 340 FPAQNKYREISSCSNCTDYQARRANIKF 367


>gi|224024370|ref|ZP_03642736.1| hypothetical protein BACCOPRO_01094 [Bacteroides coprophilus DSM
           18228]
 gi|224017592|gb|EEF75604.1| hypothetical protein BACCOPRO_01094 [Bacteroides coprophilus DSM
           18228]
          Length = 425

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E +  G  E+  PT+ +A     +G+      +M  
Sbjct: 164 GAGFPVYKGKGARLQRALINFFLDEAHAAGYEEIMPPTVVNAASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CNL---DDLYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL--SHE 209
             EF   +    D  PE SK S+ +M      +  +L L    +R   G +        +
Sbjct: 281 LHEFSKIELVRIDK-PEHSKQSHQEMLDHVEGLLKKLELPYRILRLCGGDMSFTAAICFD 339

Query: 210 FIVLADTGETQV 221
           F V ++  +  +
Sbjct: 340 FEVYSEAQKRWL 351


>gi|282859535|ref|ZP_06268640.1| serine--tRNA ligase [Prevotella bivia JCVIHMP010]
 gi|282587763|gb|EFB92963.1| serine--tRNA ligase [Prevotella bivia JCVIHMP010]
          Length = 429

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 10/221 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   +E  ++G +E+  P + +    + +G+      +M  
Sbjct: 164 GAGFPIYIGKMARLQRALEAFFLDEARKSGYLEVQPPLVVNTASGLGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+IFR  I   ++LP         FR E     +   G+ R
Sbjct: 224 AT---VDDLYLIPTAEVPVTNIFRDEILDEKDLPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHE 209
             +F   +    D  PE S  S  +M      +  +L L    ++   G +     + ++
Sbjct: 281 LHQFDKVEIVRIDK-PEHSYDSLKEMLDHVEGLLKKLELPYHILKLCGGDMSFTSAICYD 339

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           F V +   E  +  S         +         + +  +E
Sbjct: 340 FEVWSAAQERWLEVSSVSNFESYQANRLHCRYRHTEDKKIE 380


>gi|73949341|ref|XP_535214.2| PREDICTED: similar to Histidyl-tRNA synthetase homolog
           (Histidine--tRNA ligase homolog) (HisRS) [Canis
           familiaris]
          Length = 505

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/464 (10%), Positives = 122/464 (26%), Gaps = 58/464 (12%)

Query: 33  HQHSKGIYSWLPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESG 84
           HQ         P G +          + +  ++ +   R GA  +  P  +  ++  E  
Sbjct: 49  HQEKSNFVIKTPKGTRDLSPQQMVVREKILDMVIDCFKRHGAKRLDTPAFELKEMLTEK- 107

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
            Y      +  L D+  + +                     +      YQ+   +R E  
Sbjct: 108 -YGEDSGLIYDLKDQGGELLSLRYDLTVPFARYLAM----NKVKRMKRYQVGKVWRRE-S 161

Query: 145 PRFGVMRSREFLMKDAYS--FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           P     R REF   D                   M      +     L  +  R     I
Sbjct: 162 PTIVQGRYREFCQCDFDIAGQFDPMIPDAECLKIMCEVLSGLQLGDFLIKVNDRRILDGI 221

Query: 203 ---GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                    +F  +  + +         +   + ++     ++        Q     +  
Sbjct: 222 LAVCAVPQSKFHAICSSIDKLDKIPWKDVRHEMVAKKGLAPEVADRIGDYVQRHGGVSLV 281

Query: 260 SDV-------HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-KGADGKDHY 311
            ++        N++  + L + + +       G         SL     +  G   +   
Sbjct: 282 EEMFQDSRLSQNKQALEGLGDLRLLFEYLTLFGIAEKISFDLSLARGLDYYTGVIYEAVL 341

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD-----QVCRDAC- 365
           +Q  +     + V +      +DG   ++           ++I         +       
Sbjct: 342 LQTPAQAEECLNVGSVAAGGRYDGLVGVFDPKGHTVPCVGLSIGVERIFAILEERMKTAG 401

Query: 366 -----------------------EKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFP 401
                                   K+ + L   G           ++ +Q    + +G P
Sbjct: 402 LKIRTTETQVFVATPQKNFLHERLKLISELWDAGIKAELLYKNNPKLLTQLHYCEHMGIP 461

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           L VI+G + + +  ++++   +     +  E ++     + S +
Sbjct: 462 LVVIIGEQELKEGVIKLRSVASREEVAIKRENLVAEIQKKLSES 505


>gi|259048107|ref|ZP_05738508.1| serine--tRNA ligase [Granulicatella adiacens ATCC 49175]
 gi|259035168|gb|EEW36423.1| serine--tRNA ligase [Granulicatella adiacens ATCC 49175]
          Length = 430

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 73/204 (35%), Gaps = 12/204 (5%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +    + G  EM  P + +      +G++  + +++ +L D  +  
Sbjct: 174 LGARLERAIYNYMLDLHVEKHGYTEMITPYMVNEQSMYGTGQFPKFKEDVFQLTDERN-- 231

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I     LP  F  +   FR E     R   G++R  +F   +
Sbjct: 232 LTLIPTAEVPLTNYYANEILDEAQLPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFNKVE 291

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F    +           +   +   LGL    +   +G +G   +     E  + A 
Sbjct: 292 MVKFAKPEDSFDELEKMT-DNAEDVLRGLGLPFRTIVLCTGDMGFSAAKTYDVEVWIPAQ 350

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    + +DF        F
Sbjct: 351 DTYREISSCSNCVDFQARRAKIRF 374


>gi|315174090|gb|EFU18107.1| seryl-tRNA synthetase [Enterococcus faecalis TX1346]
          Length = 423

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 76/214 (35%), Gaps = 13/214 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++    +  
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQV---AESD 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F       +        +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFSDAEHSYEELEKMT-NNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
               ++    +  DF        + D        
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGHVQYA 378


>gi|124022316|ref|YP_001016623.1| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
 gi|166222762|sp|A2C798|SYS_PROM3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123962602|gb|ABM77358.1| Seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
          Length = 425

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 70/214 (32%), Gaps = 12/214 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + +  G +    +   + +     G  E+  P L +      SG+   + +E  R   
Sbjct: 166 FVTLMGQGARLERALINFMLDLHTSKGYREVMPPVLVNTASLTGSGQLPKFAEESFRC-- 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  I     LP  +      FR E     R   G++R  +
Sbjct: 224 -AEDDLWLTPTAEVPVTSLHRDEIIPADQLPLRYAAYSPCFRREAGSYGRDTRGLIRLHQ 282

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   + Y F   P+ S+ ++ ++      +   L L    +   +G +G   S     E 
Sbjct: 283 FNKVELYWFVH-PDHSQAAHAQITADAEAVLQALELPYRVIELCTGDLGFSSSRTYDLEV 341

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +       ++       DF          D   
Sbjct: 342 WLPGAGAFREISSCSICGDFQARRSAIRTKDQKG 375


>gi|329955323|ref|ZP_08296231.1| histidine--tRNA ligase [Bacteroides clarus YIT 12056]
 gi|328525726|gb|EGF52750.1| histidine--tRNA ligase [Bacteroides clarus YIT 12056]
          Length = 458

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 48/128 (37%), Gaps = 5/128 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ I   ++        + A++ 
Sbjct: 334 FGMAGVSGVGISFGADRIFDVLNQLELYPKEAVNGTQLLFINFGEKEA-AFSMNVLAQVR 392

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G       D    ++  Q + A+    P   +VG   +++ KV +K+  TG ++ ++ 
Sbjct: 393 AAGIRAEIFPDSS--KMKKQMSYANSKMIPFVALVGENEMNEGKVTLKNMETGEQKSVTP 450

Query: 432 EEVINYAS 439
           EE+++  S
Sbjct: 451 EELVSELS 458


>gi|33635224|emb|CAE21549.1| putative seryl-tRNA synthetase [Prochlorococcus marinus str. MIT
           9313]
          Length = 429

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 70/214 (32%), Gaps = 12/214 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + +  G +    +   + +     G  E+  P L +      SG+   + +E  R   
Sbjct: 170 FVTLMGQGARLERALINFMLDLHTSKGYREVMPPVLVNTASLTGSGQLPKFAEESFRC-- 227

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  I     LP  +      FR E     R   G++R  +
Sbjct: 228 -AEDDLWLTPTAEVPVTSLHRDEIIPAEQLPLRYAAYSPCFRREAGSYGRDTRGLIRLHQ 286

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   + Y F   P+ S+ ++ ++      +   L L    +   +G +G   S     E 
Sbjct: 287 FNKVELYWFVH-PDHSQAAHAQITADAEAVLQALELPYRVIELCTGDLGFSSSRTYDLEV 345

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +       ++       DF          D   
Sbjct: 346 WLPGAGAFREISSCSICGDFQARRSAIRTKDEKG 379


>gi|161350042|ref|NP_895201.2| seryl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313]
 gi|46577198|sp|Q7V608|SYS_PROMM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
          Length = 425

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 70/214 (32%), Gaps = 12/214 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + +  G +    +   + +     G  E+  P L +      SG+   + +E  R   
Sbjct: 166 FVTLMGQGARLERALINFMLDLHTSKGYREVMPPVLVNTASLTGSGQLPKFAEESFRC-- 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
             +  +   PT E  +T + R  I     LP  +      FR E     R   G++R  +
Sbjct: 224 -AEDDLWLTPTAEVPVTSLHRDEIIPAEQLPLRYAAYSPCFRREAGSYGRDTRGLIRLHQ 282

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   + Y F   P+ S+ ++ ++      +   L L    +   +G +G   S     E 
Sbjct: 283 FNKVELYWFVH-PDHSQAAHAQITADAEAVLQALELPYRVIELCTGDLGFSSSRTYDLEV 341

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
            +       ++       DF          D   
Sbjct: 342 WLPGAGAFREISSCSICGDFQARRSAIRTKDEKG 375


>gi|313222455|emb|CBY39370.1| unnamed protein product [Oikopleura dioica]
          Length = 759

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV--SDSKVEIK 419
                 I   LS +  D   D  G+ IG ++++ D +G P  +++       S + V I+
Sbjct: 600 NSVARLICEELSSLSVDYRVDTGGKTIGRKYSLNDEIGVPYGIVIDFDTFRYSPATVSIR 659

Query: 420 HRLTGIREDMSLEEVINYASHR 441
            R T  +  +++++  ++ +  
Sbjct: 660 DRDTLSQLRVNVKDAASFINQL 681



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN--RTGAIEMSVPTLQSADLWVESGRY 86
           +G I+    G+Y + PLG K  +NV    +      R    E+    +    +   SG  
Sbjct: 137 SGEIYGGGAGLYDFGPLGSKLKNNVIREWKNVFVDGRPDVFEVDTTIMTPERVLQGSGHT 196

Query: 87  DSYGKEMLRLADRNDK 102
           + +   M++     + 
Sbjct: 197 EKFADLMVKEMSSGEF 212


>gi|295398161|ref|ZP_06808210.1| serine--tRNA ligase [Aerococcus viridans ATCC 11563]
 gi|294973680|gb|EFG49458.1| serine--tRNA ligase [Aerococcus viridans ATCC 11563]
          Length = 435

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 76/217 (35%), Gaps = 10/217 (4%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG +    V   + ++    G  E+  P L + +    +G++  + +++       
Sbjct: 165 YYRGLGARLERAVYNFMLDQHQEEGYEEIIPPYLVNENAMYGTGQFPKFTEDVFSTT-NE 223

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
           D+ +   PT E  +T+ F + I    NLP  F  +   FR E     R   G++R  +F 
Sbjct: 224 DRHLTLIPTAEVPLTNYFANEIIPGENLPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFQ 283

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F    +       KM  +   I  +L L    M   +G +G   +     E  V
Sbjct: 284 KVEMVKFARPEDSYDEL-EKMVANAENILQKLNLPYRVMTLSTGDMGFSAAKTYDLEVWV 342

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            A     ++    +   F        F +       V
Sbjct: 343 PAQETYREISSCSNTEAFQARRALIRFRNANGKPEYV 379


>gi|229547035|ref|ZP_04435760.1| seryl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|256855074|ref|ZP_05560435.1| seryl-tRNA synthetase [Enterococcus faecalis T8]
 gi|307291565|ref|ZP_07571441.1| seryl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|229307963|gb|EEN73950.1| seryl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|256709587|gb|EEU24634.1| seryl-tRNA synthetase [Enterococcus faecalis T8]
 gi|306497326|gb|EFM66867.1| seryl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|315028722|gb|EFT40654.1| seryl-tRNA synthetase [Enterococcus faecalis TX4000]
          Length = 423

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 76/214 (35%), Gaps = 13/214 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++    +  
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQV---AESD 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F       +        +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFSDAEHSYEELEKMT-NNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
               ++    +  DF        + D        
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGHVQYA 378


>gi|196230472|ref|ZP_03129334.1| seryl-tRNA synthetase [Chthoniobacter flavus Ellin428]
 gi|196225402|gb|EDY19910.1| seryl-tRNA synthetase [Chthoniobacter flavus Ellin428]
          Length = 423

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 80/281 (28%), Gaps = 27/281 (9%)

Query: 14  NPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIE 68
            P+        L L    R   I     G   +   G +    +   + +      G  E
Sbjct: 137 TPKSHVDLGKDLGLLDFERATKI--SGSGFALYTGQGARLERALINFLLDLHTREHGYGE 194

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +S P L ++D  V + +   + ++  R        M   PT E  +T++ R  I     L
Sbjct: 195 VSPPFLVNSDALVGTTQLPKFEEQQYRCE---RDDMYLVPTAEVPVTNLHREEILRQEQL 251

Query: 129 PFTFYQIQLKFRDELR----PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E         G++R  +F   +                 +  +  ++
Sbjct: 252 PIRYAAYTPCFRREAGAAGLGTRGLIRIHQFDKVELVKITTPETSFAEL-ESLTANAEKV 310

Query: 185 FHRLGLKSIPMRAESGPI----GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
              LGL    +   +G I          E          +V    +F DF     N  F 
Sbjct: 311 LQLLGLHYRVIELCTGDIGFGSAKTYDIEVWAPGQNAYLEVSSCSNFGDFQARRMNLRFK 370

Query: 241 DIISLNSIVEQWTA--------PYAATSDVHNEKLFDSLPE 273
           +    N                  A T          ++PE
Sbjct: 371 NAEGKNQFAHTLNGSGTALPRLFVALTETYQQADGTIAIPE 411


>gi|229550614|ref|ZP_04439339.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255971641|ref|ZP_05422227.1| seryl-tRNA synthetase [Enterococcus faecalis T1]
 gi|255974606|ref|ZP_05425192.1| seryl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256956923|ref|ZP_05561094.1| seryl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256960726|ref|ZP_05564897.1| seryl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|257078596|ref|ZP_05572957.1| seryl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|257081438|ref|ZP_05575799.1| seryl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257421433|ref|ZP_05598423.1| seryl-tRNA synthetase [Enterococcus faecalis X98]
 gi|293384900|ref|ZP_06630738.1| serine--tRNA ligase [Enterococcus faecalis R712]
 gi|293388590|ref|ZP_06633091.1| serine--tRNA ligase [Enterococcus faecalis S613]
 gi|294781552|ref|ZP_06746890.1| serine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|307269018|ref|ZP_07550381.1| seryl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307278221|ref|ZP_07559302.1| seryl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|312901191|ref|ZP_07760476.1| seryl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|312908712|ref|ZP_07767652.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312979173|ref|ZP_07790879.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|229304333|gb|EEN70329.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255962659|gb|EET95135.1| seryl-tRNA synthetase [Enterococcus faecalis T1]
 gi|255967478|gb|EET98100.1| seryl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256947419|gb|EEU64051.1| seryl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256951222|gb|EEU67854.1| seryl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256986626|gb|EEU73928.1| seryl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|256989468|gb|EEU76770.1| seryl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257163257|gb|EEU93217.1| seryl-tRNA synthetase [Enterococcus faecalis X98]
 gi|291077818|gb|EFE15182.1| serine--tRNA ligase [Enterococcus faecalis R712]
 gi|291082048|gb|EFE19011.1| serine--tRNA ligase [Enterococcus faecalis S613]
 gi|294451409|gb|EFG19873.1| serine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|306505096|gb|EFM74285.1| seryl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|306514687|gb|EFM83239.1| seryl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|310625311|gb|EFQ08594.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|311288045|gb|EFQ66601.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|311291710|gb|EFQ70266.1| seryl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|315031222|gb|EFT43154.1| seryl-tRNA synthetase [Enterococcus faecalis TX0017]
 gi|315036450|gb|EFT48382.1| seryl-tRNA synthetase [Enterococcus faecalis TX0027]
 gi|315147058|gb|EFT91074.1| seryl-tRNA synthetase [Enterococcus faecalis TX4244]
 gi|315156336|gb|EFU00353.1| seryl-tRNA synthetase [Enterococcus faecalis TX0043]
 gi|315158469|gb|EFU02486.1| seryl-tRNA synthetase [Enterococcus faecalis TX0312]
 gi|315168211|gb|EFU12228.1| seryl-tRNA synthetase [Enterococcus faecalis TX1341]
 gi|323479332|gb|ADX78771.1| seryl-tRNA synthetase [Enterococcus faecalis 62]
 gi|327533948|gb|AEA92782.1| serine--tRNA ligase [Enterococcus faecalis OG1RF]
 gi|329577577|gb|EGG59011.1| serine--tRNA ligase [Enterococcus faecalis TX1467]
          Length = 423

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 76/214 (35%), Gaps = 13/214 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++    +  
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQV---AESD 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F       +        +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFSDAEHSYEELEKMT-NNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
               ++    +  DF        + D        
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGHVQYA 378


>gi|27262200|gb|AAN87381.1| Seryl-tRNA synthetase [Heliobacillus mobilis]
          Length = 424

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 12/203 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    +  ++ +   + G  E+  P + +      +G+   + ++M  ++       
Sbjct: 168 LGARLERAIINLMMDTHAQRGYTEIFPPFMVNKQSMFGTGQLPKFAEDMFAVS---GTEY 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDA 160
              PT E  +T+++ + I     LP         FR E         G++R  +F   + 
Sbjct: 225 FLIPTAEVPVTNLYGNEILEAEQLPIYHCAYSACFRAEAGAAGRDTRGLIRQHQFNKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADT 216
             F       +            I   LGL    +   +G +G         E  + +  
Sbjct: 285 VKFTHPDHSYEELEKLTAD-AEHILQLLGLPYRVITLCTGDMGFSSAKTYDIEVWLPSFQ 343

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +F DF     N  F
Sbjct: 344 TYREISSCSNFEDFQARRANIRF 366


>gi|113953126|ref|YP_731293.1| seryl-tRNA synthetase [Synechococcus sp. CC9311]
 gi|123327682|sp|Q0I8C9|SYS_SYNS3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|113880477|gb|ABI45435.1| seryl-tRNA synthetase [Synechococcus sp. CC9311]
          Length = 425

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 71/207 (34%), Gaps = 12/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    +   + +     G  E+  P L ++     SG+   + +E  R AD     + 
Sbjct: 173 GARLERALINFMLDLHTGKGYREVLPPVLVNSASLTGSGQLPKFAEESFRCAD---DDLW 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T + R  I     LP  +      FR E     R   G++R  +F   + Y
Sbjct: 230 LTPTAEVPLTSLHRDEIIPSDQLPLRYVAYSPCFRREAGSYGRDTRGLIRLHQFNKVELY 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F   PE S+ ++  +      +   L L    +   +G +G   +     E  +     
Sbjct: 290 WFVH-PEHSEEAHELITADAEAVLQALELPYRVLELCTGDLGFSAARTYDLEVWLAGAGA 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++       DF     +    D  +
Sbjct: 349 YREISSCSVCSDFQARRSSIRTKDGKT 375


>gi|328476615|gb|EGF47114.1| threonyl-tRNA synthetase [Lactobacillus rhamnosus MTCC 5462]
          Length = 111

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 10/110 (9%)

Query: 288 FYFGTKYSLPMSATFKGADGKDHYV-QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAP 346
           F    ++      T+ G DG++H    +    +G M    A +   + G    W      
Sbjct: 1   FMLPDRF----GLTYVGKDGEEHRPVMIHRGIVGTMERFIAYLTEIYKGAFPTWLA---- 52

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
             +    I  +++   +  EK+ A L+K G  V  DD  E++G +   + 
Sbjct: 53  -PVQAEIIPVNNEAHGEYAEKVRAELAKRGFRVEVDDRNEKMGYKIRESQ 101


>gi|323345248|ref|ZP_08085471.1| histidine--tRNA ligase [Prevotella oralis ATCC 33269]
 gi|323093362|gb|EFZ35940.1| histidine--tRNA ligase [Prevotella oralis ATCC 33269]
          Length = 454

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 2/158 (1%)

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPD 342
             G IF      +   S T  G    D     G  G+  + +             +    
Sbjct: 299 YTGAIFEVKALDTPMGSIT-GGGRYDDLTGIFGMPGLSGVGISFGADRIYDVLNTLDLYP 357

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
             +     L+ I   ++   + C  I     K G          ++  Q + A+    P 
Sbjct: 358 KESVKGTKLLFINFGEKET-EYCMPIVDAARKEGISTEIYPDKVKMKKQMSYANAKNIPF 416

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            V+ G   ++++KV +K   TG ++ ++++++I     
Sbjct: 417 VVLAGDNEIAENKVTLKDMKTGEQQILTVQDMIRKILE 454


>gi|325134013|gb|EGC56668.1| histidyl-tRNA synthetase [Neisseria meningitidis M13399]
          Length = 431

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/434 (12%), Positives = 112/434 (25%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVGRWTRAYGYRQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +                   + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGADIDAEIVAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEDKLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYVENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGEGA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++ E++ +    
Sbjct: 414 QTVAAEDLTHTLQQ 427


>gi|260786598|ref|XP_002588344.1| hypothetical protein BRAFLDRAFT_114648 [Branchiostoma floridae]
 gi|229273505|gb|EEN44355.1| hypothetical protein BRAFLDRAFT_114648 [Branchiostoma floridae]
          Length = 472

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/456 (12%), Positives = 130/456 (28%), Gaps = 28/456 (6%)

Query: 11  LQENPRDAEIAS---HKLM--------LRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIR 58
           L++   D E  S    KL+         R      +  KG   + P      + V   I 
Sbjct: 18  LKQEKADPEKISEEVQKLLSLKEQLGDARPQKFQLKTPKGTRDYNPRQMAIREGVFKTIV 77

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
               R GA  +  P  +  +    +G+Y    K +  LAD+  + +              
Sbjct: 78  NCFKRHGAETIDTPVFELKETL--TGKYGEDAKLIYDLADQGGEILSLRYDLTVPFARYL 135

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             +  +           +       R R+      +F +   Y   +          ++ 
Sbjct: 136 AMNKINTIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQYDLMIPDAECVKIVAEIL 195

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGG------DLSHEFIVLADTGETQVFCSKDFMDFPI 232
                    +      +R+E     G      D   E++ L    E      +D      
Sbjct: 196 SELNVGDFIIKTFWEDVRSEMVDEKGLAPEVADRIGEYVRLNGQLELVDQLMQDEQMMKN 255

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS----LPENKRVSAR-GIEVGHI 287
                  +++  L +  + +      + D+   +  D     + E    + +   + G  
Sbjct: 256 KMARQGLEEMKLLLTYCQLFGVLDKVSFDLSLARGLDYYTGVIYEAILTTEKVQSDGGDK 315

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
                  S+     + G  G           +G    +      S         +     
Sbjct: 316 NEPVGVGSVAGGGRYDGLVGMFDPKGKKVPCVGVS--IGIERLFSIMEAKAEAAEGKVRT 373

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIV 406
             + + + +  +   +   K+   L + G           ++ +QF  A+  G P   I+
Sbjct: 374 TETQVYVASGQKNMLEERMKLCNLLWEGGIKTELSYKKNPKLLNQFQYAEEHGIPFLAII 433

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           G + + D  V++++  T   E    ++++     R 
Sbjct: 434 GEQELKDGVVKVRNTSTREEETFPRDKLLEEIRTRV 469


>gi|328950735|ref|YP_004368070.1| Histidyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
 gi|328451059|gb|AEB11960.1| Histidyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
          Length = 420

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/427 (14%), Positives = 118/427 (27%), Gaps = 29/427 (6%)

Query: 31  MIHQHSKGIYSWLPLGQKAL--DNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRY 86
           MI    KG Y     G K      +    R+     GA+E+  P  +   ++ +      
Sbjct: 1   MIRAV-KGTYDL--YGSKLHAHRYIIDTARKVLESAGALEIQTPVFEETRVFEKGVGAST 57

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           D   KEM    DR  + +   P     +   +  H       P   +     FR E   R
Sbjct: 58  DIVRKEMYSFTDRGGRHLTLRPEGTAGIVRAYLEHGMKVWPSPVKLWMAGPMFRAENVQR 117

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
               R R+F   D  +  L           + V  LR     GL+   ++  S     D 
Sbjct: 118 G---RQRQFHQVDFEALGLEDPIVDAEAIALMVEVLRALGLTGLE---VKLGSVGDPEDR 171

Query: 207 SHEFIVLADTGETQV--FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-----PYAAT 259
                 L +  E               +               ++ +             
Sbjct: 172 ERYNAYLREVLEPYRSELSEDSQERLELNPMRIVDSKSAQDQEVLRRAGVRPMLEFLGEA 231

Query: 260 SDVHNEKLFDSLPENKR------VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           +  H E +   L              RG++      F   ++   + +  G  G+   + 
Sbjct: 232 ARAHFEAVKRHLDRLGVPYTVDPTIVRGLDYYVRTAFEIHHARIGAQSALGGGGRYDGLS 291

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
               G     V  A               +        + +   D+       ++  RL 
Sbjct: 292 ELLGGPRVPGVGWAFGVERIALALEEEGLTPPRPSGPDLYLVPLDEAAVAEALELATRLR 351

Query: 374 -KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            +    V +     ++      A+  G     ++G    +   V +K   +G++ ++   
Sbjct: 352 PQA--RVEFAYAPRRVTKGIKEAEKRGARFVGLIGEGERARGVVAVKDLASGVQVEVPPS 409

Query: 433 EVINYAS 439
           EV++   
Sbjct: 410 EVLSVIR 416


>gi|312952534|ref|ZP_07771401.1| seryl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|310629532|gb|EFQ12815.1| seryl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|315153454|gb|EFT97470.1| seryl-tRNA synthetase [Enterococcus faecalis TX0031]
          Length = 423

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 76/214 (35%), Gaps = 13/214 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++    +  
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQV---AESD 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F       +        +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFSDAEHSYEELEKMT-NNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
               ++    +  DF        + D        
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGHVQYA 378


>gi|224368220|ref|YP_002602383.1| SerS [Desulfobacterium autotrophicum HRM2]
 gi|259511665|sp|C0QLD3|SYS_DESAH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|223690936|gb|ACN14219.1| SerS [Desulfobacterium autotrophicum HRM2]
          Length = 427

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 13/215 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +L  G K    +   + +   N  G  E   P + + +  + +G+   + +++ ++   
Sbjct: 164 LYLGSGAKLERALINFMLDLHTNEHGYTETLPPFIVNRESLLGTGQLPKFEEDLFKIE-- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
             +     PT E  MT+I+R  + +  NLP  F      FR E     +   G++R  +F
Sbjct: 222 -GQEYYLIPTSEVPMTNIYRDEVLNEENLPIKFTAYTPCFRSEAGSYGKDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
              +   +       +     +  +   +  RLGL    +   SG +G   +     E  
Sbjct: 281 NKVELVKYTTPETSYQEL-ESLLANAETVLKRLGLPYQVVTLCSGDLGFSATRTYDIEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIISLN 246
           +       ++    +   F     N  F       
Sbjct: 340 MPGQDKYREISSCSNCEAFQARRANIKFRRAGQKK 374


>gi|302517981|ref|ZP_07270323.1| histidyl-tRNA synthetase [Streptomyces sp. SPB78]
 gi|318057092|ref|ZP_07975815.1| histidyl-tRNA synthetase [Streptomyces sp. SA3_actG]
 gi|302426876|gb|EFK98691.1| histidyl-tRNA synthetase [Streptomyces sp. SPB78]
          Length = 420

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 61/423 (14%), Positives = 117/423 (27%), Gaps = 30/423 (7%)

Query: 38  GIYSWLPL--G--QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           G Y  LP   G      + + A +R+     G   +  P  +   L+        D   K
Sbjct: 9   GTYDLLPPDSGRFLAVREAIAAPLRD----AGYGYIETPGFEDVRLFARGVGESTDIVSK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVM 150
           EM     +    +   P     +             NLP   +    ++R E   +    
Sbjct: 65  EMYVFTTKGGDELALRPEGTAAVLRAVLESNLHKTGNLPVKVWYSGSQYRYERPQKG--- 121

Query: 151 RSREFLMKDAY-SFDLTPEGSKHSYNKMFVSY--LRIFHRLGLKSIPMRAESGPIGGDLS 207
           R R F    A       P            +Y  L +     L +    A   P+     
Sbjct: 122 RYRHFSQVGAEAIGAEDPLLDAELIILADQAYRSLGLTRHRILLNSLGDATCRPVYRAAL 181

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +F+   D  E      +      +  +  +  D ++   ++  +              L
Sbjct: 182 QDFLRALDLDEETRRRVEINPLRVLDDKRPEVRDQLTGAPLLADYLCDACKAYHEEVRAL 241

Query: 268 FDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
            D      E+     RG++      F   +    S +  G  G+   +     G     V
Sbjct: 242 LDGAGVRYEDDPKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMLGGPELPSV 301

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             A+               +    ++ +      +  R A  +    L + G        
Sbjct: 302 GWALGVDRTVLALEAEGVVLDLPPVTSVYAIPLGEAARRALFEKVTELRRAGIATDL--- 358

Query: 385 GEQIGSQ-----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
               G +        A+  G  L +I G + + D  V++K   +G +  + L + +    
Sbjct: 359 --SFGGRGLKGAMKSANRSGARLALIAGERDLVDGSVQLKDLESGEQHAVPLAQAVAEIQ 416

Query: 440 HRF 442
              
Sbjct: 417 RLL 419


>gi|307151559|ref|YP_003886943.1| seryl-tRNA synthetase [Cyanothece sp. PCC 7822]
 gi|306981787|gb|ADN13668.1| seryl-tRNA synthetase [Cyanothece sp. PCC 7822]
          Length = 430

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 69/208 (33%), Gaps = 12/208 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG      +   + + Q   G +E+  P L ++     +G+   + +E  + +   +  +
Sbjct: 175 LGAALERALINFMLDRQIEAGYLEVMPPILINSTSLQGTGQLPKFSEESFKCS---EDEL 231

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+++R  I     LP         FR E     R   G++R  +F   + 
Sbjct: 232 WLAPTAEVPVTNLYRDEIIDLDQLPIKHCAYTPCFRREAGSYGRDTKGLIRLHQFNKVEL 291

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
                           +      I   L L    +   +G +G   +     E  + +  
Sbjct: 292 VKIVPPDTSEAEHQALVSD-AEAILQALKLPYRVIELCTGDLGFGAAKCYDLEVWLPSSN 350

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIIS 244
              ++    +F DF     N  F +   
Sbjct: 351 TYREISSCSNFRDFQARRANIRFKEKGK 378


>gi|57234640|ref|YP_181319.1| seryl-tRNA synthetase [Dehalococcoides ethenogenes 195]
 gi|123618838|sp|Q3Z8Y0|SYS_DEHE1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|57225088|gb|AAW40145.1| seryl-tRNA synthetase [Dehalococcoides ethenogenes 195]
          Length = 413

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 55/176 (31%), Gaps = 9/176 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           I       Y     G +    + A + +    + G  E+  P +   +  V SG    + 
Sbjct: 146 IKLSGSRFYILKGEGARLQRALIAFMLDLHTRKHGYTEIYPPYMIKRECLVASGNLPKFA 205

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR---- 146
             +       ++   + PT E  +T++ R  I S   LP  +      FR E        
Sbjct: 206 DNLY---HDAEEDYWWVPTAEAPLTNLHRDEILSVEQLPIHYVAYTACFRREKMSAGKDV 262

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            G+ R  +F   + Y +    +        +      I   L +     +  +  I
Sbjct: 263 RGIKRLHQFDKVELYKYCKPEDSFDELEKMVAD-AEEIADALKIPYRLKQLVTADI 317


>gi|320011902|gb|ADW06752.1| histidyl-tRNA synthetase [Streptomyces flavogriseus ATCC 33331]
          Length = 420

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/424 (12%), Positives = 118/424 (27%), Gaps = 30/424 (7%)

Query: 38  GIYSWLP----LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           G Y   P          + +++        +G   +  P  +   L+        D   K
Sbjct: 9   GTYDLTPPRSAKFLAVREAISS----PLKNSGYGYIETPGFEDVALFARGVGESTDIVSK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM     +    +   P     +             NLP   +     +R E        
Sbjct: 65  EMYAFETKGGDKLALRPEGTASVLRAALEANLHKAGNLPVKLWYSGSYYRYERPQAG--- 121

Query: 151 RSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLS 207
           R R F    A       P            +Y  +        +    +    P+  +  
Sbjct: 122 RYRHFSQVGAEAIGTEDPALDAELIILADQAYRSLGLTQFRILLNSLGDKECRPVYREAL 181

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             F+   D  E      +     P+   +    D+    +               ++E++
Sbjct: 182 QTFLRDLDLDEETRRRIEI---NPLRVLDDKRADVQKQLTGAPMLRDFLCDACKAYHEEV 238

Query: 268 FDSLP------ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            D L       E+     RG++      F   +    S +  G  G+   +     G   
Sbjct: 239 RDLLTAAGVAFEDDEKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGPAL 298

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
             V  A+               +     + +      +  R     +   L K G    +
Sbjct: 299 PSVGWALGVDRTVLALEAEGIELDIPASTSVYAVPLGEEARRVLFGLVTELRKAGVATDF 358

Query: 382 DD--MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
                G + G+    A+  G    V+ G + +++  V++K   +G +E +++ +++    
Sbjct: 359 AFGGRGLK-GAM-KSANRSGARYTVVAGERDLAEGDVQLKDMESGEQEAVAVGDLVAVIQ 416

Query: 440 HRFS 443
            + +
Sbjct: 417 AKLA 420


>gi|242280836|ref|YP_002992965.1| seryl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
 gi|259511664|sp|C6BS43|SYS_DESAD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|242123730|gb|ACS81426.1| seryl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
          Length = 425

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 72/204 (35%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
            G +    + + + + Q    G  E+  P + + D    +G+   + +++ +L    +  
Sbjct: 168 WGARLERALTSFMVDVQTMDHGYTEVIPPYIVNRDSLFGTGQLPKFEEDLFKLK---NWE 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T++ R  + S  +L   +      FR E     +   G++R  +F   +
Sbjct: 225 YYMIPTAEVPLTNLHRDEVLSEDDLSIAYCAPTPCFRSEAGSYGKDTKGLIRQHQFHKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLAD 215
                  P+ S     KM      I  RLGL    +   +G +          E  +   
Sbjct: 285 MV-RFAHPDKSFEDLEKMTGHAEEILKRLGLHYRVITLCTGDMGFGSAKTYDIEVWLPGQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    + +DF     N  F
Sbjct: 344 DKYREISSCSNCVDFQARRANIKF 367


>gi|153807618|ref|ZP_01960286.1| hypothetical protein BACCAC_01900 [Bacteroides caccae ATCC 43185]
 gi|149129980|gb|EDM21192.1| hypothetical protein BACCAC_01900 [Bacteroides caccae ATCC 43185]
          Length = 424

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 80/223 (35%), Gaps = 15/223 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  L      +     G   +   G +    +     +E  ++
Sbjct: 133 METELPKDALPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARKS 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G IE+  PT+ +A     +G+      +M          +   PT E  +T+I+R  I  
Sbjct: 193 GYIEIMPPTVVNAASGYGTGQLPDKEGQMYHCE---VDDLYLIPTAEVPVTNIYRDVILD 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M   
Sbjct: 250 EKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRIDK-PEHSKQSHQEMLDH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQV 221
              +  +L L    +R   G +        +F V ++  +  +
Sbjct: 309 VEGLLQKLELPYRILRLCGGDMSFTAALCFDFEVYSEAQKRWL 351


>gi|328943493|ref|ZP_08240958.1| serine--tRNA ligase [Atopobium vaginae DSM 15829]
 gi|327491462|gb|EGF23236.1| serine--tRNA ligase [Atopobium vaginae DSM 15829]
          Length = 427

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 71/211 (33%), Gaps = 13/211 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
            Y     G +    +     +  N  G  E   P L + D    +G+   + +++  +++
Sbjct: 165 FYVLGGYGAQMERALINFFIDMHNEAGFKEWWPPVLTNYDSLFGTGQLPKFDEDLFHVSN 224

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                +   PT E ++T++ R  +     LP  +      FR+E     R   G++R  E
Sbjct: 225 ----DLYLIPTAEVMLTNLHRDEVLDASQLPLKYTAFTPCFREEAGSAGRDTRGIIRVHE 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F    +        M     +    LGL    +   +G IG         E 
Sbjct: 281 FDKVEMVKFAKPEDSMNQL-ESMVAEAEKCLQVLGLAYRVVSLCTGDIGFSACKCYDLEV 339

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            + +     ++    +  DF     N  + D
Sbjct: 340 WLPSYNNYKEISSCSNCWDFQARRANIKYRD 370


>gi|311273539|ref|XP_003133915.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Sus scrofa]
          Length = 77

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 379 VFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           V  D D G  +  +   A L  +   ++VG K  S   V I+ R   +  + ++ E +  
Sbjct: 2   VDIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKSSGTVNIRTRDNKVHGERTISETVGR 61

Query: 438 ASHRFSNN 445
                 + 
Sbjct: 62  LEQLRQSR 69


>gi|301633230|gb|ADK86784.1| proline--tRNA ligase [Mycoplasma pneumoniae FH]
          Length = 483

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 95/268 (35%), Gaps = 10/268 (3%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +       +   RAE        + EF      G   +F      +    +    + 
Sbjct: 140 YQNLPVIYNQWTCVFRAEKNTRPFLRNSEFYWQETHG---LFSDGVNSESAAIAFWKLYQ 196

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           DII     +  +    +        +   ++ E+     + ++       G  ++ P   
Sbjct: 197 DIIVNQLCIPAFVGLKSPNERFAGAQNTWTV-ESIMPDGQALQCATSHDLGQTFTKPFGL 255

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQ 359
           TF+    +       S GI + R++ A++ +  D  G+I P  VAP ++ L       D 
Sbjct: 256 TFQNQANQQAIPYSFSCGI-STRILGALLLTHSDDFGLILPWKVAPIQVKLYLFDKKGDT 314

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  +K+   L ++     +  +  Q+G Q    ++ G P Q+IV     +   V I 
Sbjct: 315 KTVELAQKVQTLLEQLAIRFQFIKVENQLGKQLGQGEVNGIPFQLIVD----NPQTVNIF 370

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRP 447
           +RLT ++   S E++ +           
Sbjct: 371 NRLTRVKTAYSFEQLASRFVELVQQYHQ 398


>gi|189467869|ref|ZP_03016654.1| hypothetical protein BACINT_04261 [Bacteroides intestinalis DSM
           17393]
 gi|189436133|gb|EDV05118.1| hypothetical protein BACINT_04261 [Bacteroides intestinalis DSM
           17393]
          Length = 424

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 15/223 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  L      +     G   +   G +    +     +E  + 
Sbjct: 133 METELPKDALPHWELTKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARKA 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G +E+  PT+ +A     +G+      +M          +   PT E  +T+I+R  I  
Sbjct: 193 GYLEIMPPTVVNAASGYGTGQLPDKEGQMYHCE---VDDLYLIPTAEVPVTNIYRDVILE 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M   
Sbjct: 250 EKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRIDK-PEHSKQSHKEMLDH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQV 221
              +  +L L    +R   G +        +F V ++  +  +
Sbjct: 309 VEGLLQKLELPYRILRLCGGDMSFTAALCFDFEVYSEAQKRWL 351


>gi|148231871|ref|NP_001091602.1| probable histidyl-tRNA synthetase, mitochondrial precursor [Bos
           taurus]
 gi|193806520|sp|A5D7V9|SYHM_BOVIN RecName: Full=Probable histidyl-tRNA synthetase, mitochondrial;
           AltName: Full=Histidine--tRNA ligase; Short=HisRS;
           Flags: Precursor
 gi|146186863|gb|AAI40700.1| DTD1 protein [Bos taurus]
          Length = 506

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/454 (11%), Positives = 117/454 (25%), Gaps = 59/454 (12%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           P G +          + +  ++     R GA  +  P  +  ++  E   Y      +  
Sbjct: 60  PKGTRDLSPQQMVVREKILDVVVSCFKRHGAKGLDTPAFELKEILTEK--YGEDSGLIYD 117

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +                     +      Y +   +R E  P     R REF
Sbjct: 118 LKDQGGELLSLRYDLTVPFARYLAM----NKVKKMKRYHVGKVWRRE-SPTIVQGRYREF 172

Query: 156 LMKDAYS--FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI---GGDLSHEF 210
              D                   M      +     L  +  R     I    G    +F
Sbjct: 173 YQCDFDIAGQFDPMIPDAECLKIMCEILSGLHLGDFLIKVSDRRILDGIFAVCGVPESKF 232

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV-------H 263
             +  + +     S   +   +  +     ++        Q     +    +        
Sbjct: 233 HAICSSVDKLDKISWKDVRHEMVVKKGLAPEVADRIGDYVQCHGGISLVEQMFQDPRLSQ 292

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           N++  + L + K +       G         SL     +      +  +           
Sbjct: 293 NKQALEGLGDLKLLFEYLTLFGVAEKVSFDLSLARGLDYYTGVIYEAVLLQTPVHAEEEP 352

Query: 324 VVAAVIES--SHDGKGIIWPDSVAPFKISLINIKAH------DQVCRDACEKIY------ 369
           +    + +   +DG   ++           ++I         +Q  +   EKI       
Sbjct: 353 LNMGSVAAGGRYDGLVGMFDPRGHKVPCVGLSIGVERIFSIVEQRIKTFGEKIRTTETQV 412

Query: 370 -----------------ARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFV 411
                            A L   G           ++  Q    + +G PL VI+G + +
Sbjct: 413 FVATPQKNFLQERLKLIAELWDAGIKAELMYKNNPKLLPQLHYCENMGIPLVVIIGEQEL 472

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +  ++++   +     +  E ++     R S +
Sbjct: 473 KEGVIKLRSVASREEVAIKRENLVAEIQKRLSES 506


>gi|296485230|gb|DAA27345.1| probable histidyl-tRNA synthetase, mitochondrial precursor [Bos
           taurus]
          Length = 506

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/454 (11%), Positives = 117/454 (25%), Gaps = 59/454 (12%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           P G +          + +  ++     R GA  +  P  +  ++  E   Y      +  
Sbjct: 60  PKGTRDLSPQQMVVREKILDVVVSCFKRHGAKGLDTPAFELKEILTEK--YGEDSGLIYD 117

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +                     +      Y +   +R E  P     R REF
Sbjct: 118 LKDQGGELLSLRYDLTVPFARYLAM----NKVKKMKRYHVGKVWRRE-SPTIVQGRYREF 172

Query: 156 LMKDAYS--FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI---GGDLSHEF 210
              D                   M      +     L  +  R     I    G    +F
Sbjct: 173 YQCDFDIAGQFDPMIPDAECLKIMCEILSGLHLGDFLIKVSDRRILDGIFAVCGVPESKF 232

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV-------H 263
             +  + +     S   +   +  +     ++        Q     +    +        
Sbjct: 233 HAICSSVDKLDKISWKDVRHEMVVKKGLAPEVADRIGDYVQCHGGISLVEQMFQDPRLSQ 292

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMR 323
           N++  + L + K +       G         SL     +      +  +           
Sbjct: 293 NKQALEGLGDLKLLFEYLTLFGVAEKVSFDLSLARGLDYYTGVIYEAVLLQTPVHAEEEP 352

Query: 324 VVAAVIES--SHDGKGIIWPDSVAPFKISLINIKAH------DQVCRDACEKIY------ 369
           +    + +   +DG   ++           ++I         +Q  +   EKI       
Sbjct: 353 LNMGSVAAGGRYDGLVGMFDPRGHKVPCVGLSIGVERIFSIVEQRIKTFGEKIRTTETQV 412

Query: 370 -----------------ARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFV 411
                            A L   G           ++  Q    + +G PL VI+G + +
Sbjct: 413 FVATPQKNFLQERLKLIAELWDAGIKAELMYKNNPKLLPQLHYCENMGIPLVVIIGEQEL 472

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            +  ++++   +     +  E ++     R S +
Sbjct: 473 KEGVIKLRSVASREEVAIKRENLVAEIQKRLSES 506


>gi|220910001|ref|YP_002485312.1| seryl-tRNA synthetase [Cyanothece sp. PCC 7425]
 gi|254783020|sp|B8HL86|SYS_CYAP4 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|219866612|gb|ACL46951.1| seryl-tRNA synthetase [Cyanothece sp. PCC 7425]
          Length = 424

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 67/206 (32%), Gaps = 12/206 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G +E+  P L ++     +G+   + +E  +        + 
Sbjct: 173 GAALERALIQFMLDRHTSAGYLEVLPPFLINSTSLTATGQLPKFAEESFKCEA---DDLW 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I +  NLP         FR E     R   G++R  +F   +  
Sbjct: 230 LAPTAEVPVTNLYRDEILTAENLPIYHCAYTPCFRREAGSYGRDTRGLIRLHQFNKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                    +     +      I   L L    +   +G +G   +     E  + +   
Sbjct: 290 KLVHPSTSEQEHEALVRD-ASAILEALQLPYRVIELCTGDLGFSAAKCYDLEVWLPSAGC 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDII 243
             ++    +F DF        F +  
Sbjct: 349 YREISSCSNFYDFQARRGKIRFKESG 374


>gi|169840421|ref|ZP_02873609.1| glycyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 46

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           WDD    IG ++   D +G P  V++  + + D  V ++ R T  +
Sbjct: 2   WDD-NGNIGKRYRRQDEIGTPHCVVIDFRTLEDDTVTVRERDTTEQ 46


>gi|29833386|ref|NP_828020.1| histidyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
 gi|39932146|sp|Q827T0|SYH_STRAW RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|29610509|dbj|BAC74555.1| putative histidyl-tRNA synthetase [Streptomyces avermitilis
           MA-4680]
          Length = 420

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/391 (13%), Positives = 110/391 (28%), Gaps = 12/391 (3%)

Query: 61  QNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
              +G   +  P  ++ +L+        D   KEM     +    +   P     +    
Sbjct: 32  LRNSGYGYIETPGFENVELFARGVGESTDIVTKEMYAFETKGGDRLALRPEGTASVLRAA 91

Query: 119 RSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDLTPEGSKHSYNK 176
                    NLP   +     +R E   +    R R F    A       P         
Sbjct: 92  LEANLHKAGNLPVKLWYSGSYYRYERPQKG---RYRHFSQVGAEAIGAEDPALDAELIIL 148

Query: 177 MFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
              SY  +  R     +    +    P+      +F+   D  E  +  ++      +  
Sbjct: 149 ADQSYRSLGLRNFRILLNSLGDKECRPVYRAALQDFLRGLDLDEDTLRRAEINPLRVLDD 208

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFG 291
           +  D    +    ++  +             +L  +     E+     RG++      F 
Sbjct: 209 KREDVQKQLGGAPLLRDYLCDACKAYHEEVRELITAAGVSFEDDAKLVRGLDYYTRTTFE 268

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
             +    S +  G  G+   +     G     V  A+               +     + 
Sbjct: 269 FVHDGLGSQSAVGGGGRYDGLSEMIGGPALPSVGWALGVDRTVLALEAEGVELELPSSTS 328

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +      +  R         L KVG    +   G+ +      A+  G    V+ G + +
Sbjct: 329 VFAVPLGEEARRILFAKVTELRKVGIAADFAYGGKGLKGAMKNANRSGARYTVVAGERDL 388

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           ++  V++K   +G +  + + E++     R 
Sbjct: 389 AEGVVQLKDMESGEQTAVGVNEIVAELEARL 419


>gi|300770263|ref|ZP_07080142.1| histidine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762739|gb|EFK59556.1| histidine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 472

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 55/163 (33%), Gaps = 10/163 (6%)

Query: 283 EVGHIFYFGT----KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
             G IF   T      S+     +    G      +   G+         +    D    
Sbjct: 306 YTGCIFEVKTNEVSMGSIGGGGRYDDLTGMFGLKGLTGVGVSFGADRIYDVLEELDLYPK 365

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
              D+     ++       D+        +  RL + G  V       ++  Q + AD  
Sbjct: 366 HESDNTRLLIVNF------DKSIEAFTLPLLNRLRQAGIAVELYPQAVKLKKQMSYADDK 419

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
             P  +++G + V+  K+ +K+  +G ++ +S +E+    S +
Sbjct: 420 RIPYVLLIGEEEVNTGKLSLKNMKSGEQQKLSEQEITVLLSKQ 462


>gi|194476552|ref|YP_002048731.1| seryl-tRNA synthetase [Paulinella chromatophora]
 gi|171191559|gb|ACB42521.1| seryl-tRNA synthetase [Paulinella chromatophora]
          Length = 426

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 12/193 (6%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G K    +   + +   + G  E+  P L + +    SG+   + +E  R +   +  + 
Sbjct: 173 GAKLERALINFMLDFHTKKGYCEILPPILANTNSLTGSGQLPKFAEESFRCS---EDDLW 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T + R  I +  +LP  +      FR E     R   G++R  +F   + Y
Sbjct: 230 LIPTSEVPITSLHRDEIIAADDLPLKYVAYSPCFRREAGSYGRDTRGLIRLHQFNKVELY 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F    +  K            +   L L    +   +G IG   +     E  +     
Sbjct: 290 WFSHPDDSDKAHIQITAD-AEAVLQALELPYRVLDLCTGDIGFSATRTYDLEVWLPGANA 348

Query: 218 ETQVFCSKDFMDF 230
             ++  S +  DF
Sbjct: 349 YREISSSSNCADF 361


>gi|149372135|ref|ZP_01891405.1| histidyl-tRNA synthetase [unidentified eubacterium SCB49]
 gi|149354902|gb|EDM43464.1| histidyl-tRNA synthetase [unidentified eubacterium SCB49]
          Length = 431

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 1/99 (1%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
                     ++ I    +       K   +L              ++  Q   AD  G 
Sbjct: 334 FPETVSANTKVLFINFGAKEAL-YAMKSITKLRAKNISAELYPDEAKMKKQMGYADKRGI 392

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              V+ G K +   K  +K+  TG +  ++ +E++N   
Sbjct: 393 TYTVLAGDKEMEAEKFTLKNMKTGEQASLNFDELVNRLK 431


>gi|156386252|ref|XP_001633827.1| predicted protein [Nematostella vectensis]
 gi|156220902|gb|EDO41764.1| predicted protein [Nematostella vectensis]
          Length = 519

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/461 (9%), Positives = 116/461 (25%), Gaps = 53/461 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
            + +  KG   ++P           +I     R GA+++  P  +  +    +G+Y    
Sbjct: 64  FVLKTPKGTRDYMPKQMAVRQRAFEVIVGAFERHGAVQIDTPVFELKETL--TGKYGEDS 121

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           K +  LAD+  + +                +              +       R R+   
Sbjct: 122 KLIYDLADQGGEMLSLRYDLTVPFARYVAMNKIDKIKRYHIAKVYRRDNPAMTRGRYREF 181

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              +  +   Y   +          ++         ++ +    +      + G    +F
Sbjct: 182 YQCDIDIAGQYDAMIPDAECVKIVAEILADLELGDFKIKVNHRRLLDGMFAVCGVPEGKF 241

Query: 211 IVLA---DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD----VH 263
             +    D  +   +                  D I     +          +     + 
Sbjct: 242 RTICSAVDKLDKATWEEVRKEMVDEKGLEGSAADRIGEYVKLSGGMNLVERLAQDGELMK 301

Query: 264 NEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG--- 320
           N+   ++L + + +                 SL     +      +  +      +G   
Sbjct: 302 NKNAKEALEDMELLLQYCELFNVTEKVLFDLSLARGLDYYTGVIYEAILTGKLPDLGKAE 361

Query: 321 ---AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK---------AHDQVCRDACE-- 366
               + V +      +D    ++           ++I          A  +         
Sbjct: 362 KGEPVGVGSVAGGGRYDNLVGMFDPKGRKVPCVGVSIGIERIFSILEAKSEASDKKMRTN 421

Query: 367 ------------------KIYARLSKVGC--DVFWDDMGEQIGSQFAVA---DLLGFPLQ 403
                             K+ + L + G   +V +    +            +  G PL 
Sbjct: 422 KTQVLVASGQKNMLQHRLKLASELWEAGVKAEVLY---KKNP-KMLNQFQFCEEGGVPLC 477

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +++G K + +  V ++   +     +   +V +    R  +
Sbjct: 478 LVIGEKELEEGIVTLRDMESREEVSVKRADVCDIIKKRLQS 518


>gi|304382464|ref|ZP_07364962.1| histidine--tRNA ligase [Prevotella marshii DSM 16973]
 gi|304336417|gb|EFM02655.1| histidine--tRNA ligase [Prevotella marshii DSM 16973]
          Length = 452

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 34/81 (41%)

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +     C  + + L   G          ++  Q   A+    P   + G   ++++K+ +
Sbjct: 372 ETETAYCLPVLSELRSNGIRAEIYPDKAKMKKQMTYANAKHIPFVALAGDNEIAENKITV 431

Query: 419 KHRLTGIREDMSLEEVINYAS 439
           K+  TG ++ +S +E+I   S
Sbjct: 432 KNMETGTQQLVSAKELITLLS 452


>gi|324504360|gb|ADY41882.1| Histidyl-tRNA synthetase [Ascaris suum]
          Length = 532

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/515 (12%), Positives = 126/515 (24%), Gaps = 87/515 (16%)

Query: 8   LPILQENPRDAEIA--------SHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNA 55
           +  L+E   DAE+           K +L    +   + +  KG   + P      + V  
Sbjct: 25  IRALKEAKSDAELIKEKIARMLEKKKLLGDEGQGKFVLKCPKGTRDYGPKAMAIREKVLG 84

Query: 56  IIREEQNRTGAIEMSVPTLQSADLW-----VESG----------------RYD------- 87
           ++ E   R GA  +  P  +  D+       E G                RYD       
Sbjct: 85  VVTESFKRHGAETIDTPVFELRDVLMGKYGEEGGKLIFDLADQGGELLSLRYDLTVPFAR 144

Query: 88  -----------------SYGKEMLRLADRNDKAMIYGPTHEEVMTDIF---------RSH 121
                             Y ++   +     +             D              
Sbjct: 145 YLAMNKVTNIKRYHIAKVYRRDQPVMTRGRYREFFQCDFDIAGQYDAMVPEAECLKVIDE 204

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKH---SYNKMF 178
           + S   L     ++  +   E       +   EF    +    L                
Sbjct: 205 VMSALELGDFQIKLNHRLMLEGMFSVSGVSDLEFKTVCSSIDKLDKVSWDEVRTELVNEK 264

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                +  +L          S      L   F    +TG       K   D  +  E  +
Sbjct: 265 HINEVVVDKLEKFVRMREQNSSLSNSQLLDRFESDNETGAHSSV-KKAIADIRLLLEYCE 323

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPM 298
             D+         +    A   D +   +F+++ +      RG +           +   
Sbjct: 324 LYDVAKRVV----FDPALARGLDYYTGTIFETVVKEFSTGYRGGDGRTNDEVDENSTNVG 379

Query: 299 SA----TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINI 354
           S      +    G     +     +G           S          S      + + +
Sbjct: 380 SVAAGGRYDNLVGMFSQKKQSVPCVGVS--FGIERLFSIMEMRAELEKSAVRTTETEVFV 437

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKF 410
            +  +       K+   L +            +   +        +    PL  IVG + 
Sbjct: 438 ASAQKNLLKERMKLCKLLWENNIKAEM---AYKANPKMLTQLQYCEERLIPLVAIVGERE 494

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
           + +  V++++      +D+ L  ++     R + N
Sbjct: 495 LQEGVVKLRNVEDRQEQDIPLSRLVEEIRARLAKN 529


>gi|298208642|ref|YP_003716821.1| histidyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
 gi|83848565|gb|EAP86434.1| histidyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
          Length = 456

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%)

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              +   +L   G         +++G QF  A+    P  V+ G   +++  + +K   T
Sbjct: 381 YAMQAIKKLRANGVSAELYPDKKKMGKQFDYANKRNIPFVVVAGETEIANDLLALKSMKT 440

Query: 424 GIREDMSLEEVINYAS 439
           G +ED+SL+ +I   S
Sbjct: 441 GEQEDVSLQTLITKMS 456


>gi|294673444|ref|YP_003574060.1| serine--tRNA ligase [Prevotella ruminicola 23]
 gi|294473781|gb|ADE83170.1| serine--tRNA ligase [Prevotella ruminicola 23]
          Length = 439

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 10/186 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++  G +    +     +E  ++G  E+  PT+ +A     +G+      +M  
Sbjct: 178 GAGFPVYIGKGARLQRALINFFLDEARKSGYTEIMPPTVVNAASGYGTGQLPDKEGQMYH 237

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                       PT E  +T+I+R  I   ++LP         FR E     +   G+ R
Sbjct: 238 CE---VDDFYLIPTAEVPVTNIYRDVILDEKDLPIKNCAYTECFRREAGSYGKDVRGLNR 294

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHE 209
             EF   +    D  PE SK S+ +M      +  +L L    +            + ++
Sbjct: 295 LHEFSKIEIVRIDK-PEHSKESHKEMLEHVEGLLKKLELPYRILLLCGGDQSFTSAICYD 353

Query: 210 FIVLAD 215
           F V ++
Sbjct: 354 FEVYSE 359


>gi|332234658|ref|XP_003266523.1| PREDICTED: histidyl-tRNA synthetase, cytoplasmic isoform 3
           [Nomascus leucogenys]
          Length = 480

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/455 (12%), Positives = 125/455 (27%), Gaps = 51/455 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
            + +  KG   + P      + V  +I     R GA  +  P  +  +    +G+Y    
Sbjct: 25  FVLKTPKGTRDYSPRQMAVREKVFDVIIHCFKRHGAEVIDTPVFELKETL--TGKYGEDS 82

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           K +  L D+  + +                   +   L         K      P     
Sbjct: 83  KLIYDLKDQGGELLSLRYDLTVPFA-----RYLAMNKLTNIKRYHIAKVYRRDNPAMTRG 137

Query: 151 RSREFLMKDAYSF-DLTPEGSKHSYNKMFVSYL---RIFHRLGLKSIPMRAE-SGPIGGD 205
           R REF   D     +  P        K+    L   +I   L   +     +    I G 
Sbjct: 138 RYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGV 197

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV--- 262
              +F  +  + +     S + +   +  E     ++        Q     +    +   
Sbjct: 198 SDSKFRTICSSVDKLDKMSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQD 257

Query: 263 ----HNEKLFDSLPENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGAD-------- 306
                N++  + L + K +       GI+    F       L                  
Sbjct: 258 PKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQ 317

Query: 307 -------------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW------PDSVAPF 347
                        G  +   +G +     +V    +    +    I        +     
Sbjct: 318 AGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKVRT 377

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIV 406
             + + + +  +   +   K+ + L   G           ++ +Q    +  G PL  I+
Sbjct: 378 TETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAII 437

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G + + D  ++++   +    D+  E+++     R
Sbjct: 438 GEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRR 472


>gi|114320852|ref|YP_742535.1| seryl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311524|sp|Q0A7Z2|SYS_ALHEH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|114227246|gb|ABI57045.1| seryl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 424

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 78/241 (32%), Gaps = 19/241 (7%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSK---G--IYSWLPLGQKALDNVNAIIREEQN-RTGAIE 68
           PRD        +L  G+  + +    G           +    +   + +      G  E
Sbjct: 136 PRDHVELGE--LLDGGLDFEAAAKLTGARFVVMRGAVARLHRALIQFMLDTHTAEHGYQE 193

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           + VP + + D    +G+   +  ++  L    ++     PT E  +T++ R  I +   L
Sbjct: 194 IYVPYMVNRDSLFGTGQLPKFAADLFHL--DAEQDYYLIPTAEVPVTNMARDEIIADGQL 251

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  F      FR E     +   G++R  +F   +             +   +      I
Sbjct: 252 PLKFACHTPCFRSEAGSHGKDTRGMIRQHQFEKVELVQMVRPEASW-EALEALTGHAETI 310

Query: 185 FHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
             RL L    +   +G +G         E  + A     ++    +F+DF        + 
Sbjct: 311 LQRLDLPYRVVTLCTGDLGFSSAKTYDIEVWLPAQETYREISSCSNFLDFQARRMQARWR 370

Query: 241 D 241
           +
Sbjct: 371 N 371


>gi|317488837|ref|ZP_07947368.1| histidyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|316912066|gb|EFV33644.1| histidyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
          Length = 457

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/429 (13%), Positives = 114/429 (26%), Gaps = 36/429 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLRL-- 96
             LP   K   +  A   +   R G + +  P  +  +L+V       D   KEM     
Sbjct: 11  DLLPDEAKFWAHFKATAADMFGRYGYVTIETPVFEQTELFVRGIGEATDVVSKEMFTAIS 70

Query: 97  -----------ADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELR 144
                        +    +   P     +      H        P         FR E  
Sbjct: 71  GENLNKLLGGGTIKGKSRLSLRPEGTAGVVRAVVQHDLVPQGAAPAKLMYAGPMFRAERP 130

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
            +    R R+F                    +  +  +R F  +G+     R     +G 
Sbjct: 131 QKG---RQRQFNQVGVECLGAEDPSVDA---EGIIMLMRFFAAIGIPVDATRLLVNSMGC 184

Query: 205 DLSH-------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           +          +  + A   E    C +     P+ + +    D  ++ +   + T    
Sbjct: 185 EQCRPAYRDAVKAYMDAHADELCDECKRRAEINPLRAFDCKNPDCAAVMADAPKITEHLC 244

Query: 258 ATSDVHNEKLFDSLP------ENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGADGKDH 310
                H + +   L       E      RG++      F  + +    S    G  G+  
Sbjct: 245 DDCREHYDTVKAYLGGAGLSFEEDPKLVRGLDYYTRTVFEVQVTEGMGSQNAIGGGGRYD 304

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            +     G        A+                   +     +   D   R     +  
Sbjct: 305 KLAEEVGGRPTPGFGFALGYERCALALQAAGYEFPAARRCDFFVACVDDSVRAEAFSLVQ 364

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
                G     D     + SQF +AD LG  +  ++G   ++  +V++++  T       
Sbjct: 365 ACRDAGLIGEMDHQHRSLKSQFKLADKLGAVVVAVLGPDELAAGQVKVRNMRTHQESAAD 424

Query: 431 LEEVINYAS 439
           L  +    +
Sbjct: 425 LAALKKLLA 433


>gi|303228838|ref|ZP_07315651.1| serine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516458|gb|EFL58387.1| serine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 426

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 74/237 (31%), Gaps = 15/237 (6%)

Query: 14  NPRDAEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMS 70
            P+       +L +      +         +  LG +    +   + +   ++ G  EM 
Sbjct: 135 EPKAHWDIGEELDILDFNRAVKMSGARFTVYKGLGARLERALINFMVDLHVDKQGYTEMM 194

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + + +    +G+   + ++M  +    +      PT E  +T+     I S   LP 
Sbjct: 195 TPYMVTRETLTGTGQLPKFAEDMYHVE---NTEYFLIPTAEVTLTNYHSGEILSEDELPK 251

Query: 131 TFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            +      FR E     R   G++R  +F   +        +       K+  +   +  
Sbjct: 252 YYTAFTACFRAEAGSAGRDTRGLIRQHQFNKVEMVKLSKPEDSWNEL-EKLTDNAEEVLR 310

Query: 187 RLGLKSIPMRAESGPI----GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            L L    +   +G I          E  + A     ++    +  DF     N  F
Sbjct: 311 LLELPFRVITLCTGDIGFGSAKTYDVEVWMPAQNKYREISSCSNMTDFQARRANIKF 367


>gi|257790363|ref|YP_003180969.1| histidyl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|325833722|ref|ZP_08166137.1| histidine--tRNA ligase [Eggerthella sp. HGA1]
 gi|257474260|gb|ACV54580.1| histidyl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|325485262|gb|EGC87732.1| histidine--tRNA ligase [Eggerthella sp. HGA1]
          Length = 457

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/429 (13%), Positives = 114/429 (26%), Gaps = 36/429 (8%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLRL-- 96
             LP   K   +  A   +   R G + +  P  +  +L+V       D   KEM     
Sbjct: 11  DLLPDEAKFWAHFKATAADMFGRYGYVTIETPVFEQTELFVRGIGEATDVVSKEMFTAIS 70

Query: 97  -----------ADRNDKAMIYGPTHEEVMTDIFRSHIK-SYRNLPFTFYQIQLKFRDELR 144
                        +    +   P     +      H        P         FR E  
Sbjct: 71  GENLNKLLGGGTIKGKSRLSLRPEGTAGVVRAVVQHDLVPQGAAPAKLMYAGPMFRAERP 130

Query: 145 PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
            +    R R+F                    +  +  +R F  +G+     R     +G 
Sbjct: 131 QKG---RQRQFNQVGVECLGAEDPSVDA---EGIIMLMRFFAAIGIPVDATRLLVNSMGC 184

Query: 205 DLSH-------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYA 257
           +          +  + A   E    C +     P+ + +    D  ++ +   + T    
Sbjct: 185 EQCRPAYRDAVKAYMDAHADELCDECKRRAEINPLRAFDCKNPDCAAVMADAPKITEHLC 244

Query: 258 ATSDVHNEKLFDSLP------ENKRVSARGIEVGHIFYFGTKYSL-PMSATFKGADGKDH 310
                H + +   L       E      RG++      F  + +    S    G  G+  
Sbjct: 245 DDCREHYDTVKAYLGGAGLSFEEDPKLVRGLDYYTRTVFEVQVTEGMGSQNAIGGGGRYD 304

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            +     G        A+                   +     +   D   R     +  
Sbjct: 305 KLAEEVGGRPTPGFGFALGYERCALALQAAGYEFPAARRCDFFVACVDDSVRAEAFSLVQ 364

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
                G     D     + SQF +AD LG  +  ++G   ++  +V++++  T       
Sbjct: 365 ACRDAGLIGEMDHQHRSLKSQFKLADKLGAVVVAVLGPDELAAGQVKVRNMRTHQESAAD 424

Query: 431 LEEVINYAS 439
           L  +    +
Sbjct: 425 LAALKKLLA 433


>gi|302346704|ref|YP_003815002.1| serine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
 gi|302150536|gb|ADK96797.1| serine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
          Length = 429

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 10/221 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   +E  ++G +E+  P + + +    +G+      +M  
Sbjct: 164 GAGFPLYIGKMARFQRALEAFFLDEARKSGYLEVQPPLVVNQESGQATGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+IFR  I + ++LP         FR E     +   G+ R
Sbjct: 223 --HANLDDLYLIPTAEVPVTNIFRDEILNEQDLPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL--SHE 209
             +F   +    D  PE S  S ++M      +  +L L    +R   G I       ++
Sbjct: 281 LHQFDKVEIVRIDK-PEHSYQSLDEMLDHVEGLLKKLELPYHILRLCGGDISFTAALCYD 339

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           F V +   E  +  S         +         + +  +E
Sbjct: 340 FEVWSAAQERWLEVSSVSNFESYQANRLHCRFRHAEDKKIE 380


>gi|13508141|ref|NP_110090.1| prolyl-tRNA synthetase [Mycoplasma pneumoniae M129]
 gi|2501039|sp|P75382|SYP_MYCPN RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|1674123|gb|AAB96084.1| putative prolyl-tRNA synthetase [Mycoplasma pneumoniae M129]
          Length = 483

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 95/268 (35%), Gaps = 10/268 (3%)

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           Y  +       +   RAE        + EF      G   +F      +    +    + 
Sbjct: 140 YQNLPVIYNQWTCVFRAEKNTRPFLRNSEFYWQETHG---LFSDGVNSESAAIAFWKLYQ 196

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSA 300
           DII     +  +    +        +   ++ E+     + ++       G  ++ P   
Sbjct: 197 DIIVNQLCIPAFVGLKSPNERFAGAQNTWTV-ESIMPDGQALQCATSHDLGQTFTKPFGL 255

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH-DQ 359
           TF+    +       S GI + R++ A++ +  D  G++ P  VAP ++ L       D 
Sbjct: 256 TFQNQANQQAIPYSFSCGI-STRILGALLLTHSDDFGLVLPWKVAPIQVKLYLFDKKGDT 314

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
              +  +K+   L ++     +  +  Q+G Q    ++ G P Q+IV     +   V I 
Sbjct: 315 KTVELAQKVQTLLEQLAIRFQFIKVENQLGKQLGQGEVNGIPFQLIVD----NPQTVNIF 370

Query: 420 HRLTGIREDMSLEEVINYASHRFSNNRP 447
           +RLT ++   S E++ +           
Sbjct: 371 NRLTRVKTAYSFEQLASRFVELVQQYHQ 398


>gi|269792616|ref|YP_003317520.1| seryl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100251|gb|ACZ19238.1| seryl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 427

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 70/203 (34%), Gaps = 12/203 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    +   + +     G IE+S P L S+     +G+   + +++ R     +  +
Sbjct: 168 LGARLERALVQYMLDLHTSNGFIEVSPPFLVSSATMTGTGQLPKFSEDLYRC---ANDDL 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++    I    +LP  +      FR E     R   G++R  +F   + 
Sbjct: 225 WLIPTAEVPLTNLHSGEILDEDSLPLHYTAHTPCFRREAGSYGRDVKGMLRVHQFPKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLADT 216
                  E        +  S   +   LGL    +   +G +          E  + +  
Sbjct: 285 VKICRPEESYDEL-ESLTASAESVLKGLGLPYRVVCLCTGDMGFASSKTYDIEVWLPSQG 343

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF     NT +
Sbjct: 344 CYREISSCSNCEDFQARRMNTRY 366


>gi|227495479|ref|ZP_03925795.1| histidine--tRNA ligase [Actinomyces coleocanis DSM 15436]
 gi|226831026|gb|EEH63409.1| histidine--tRNA ligase [Actinomyces coleocanis DSM 15436]
          Length = 442

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 63/430 (14%), Positives = 119/430 (27%), Gaps = 39/430 (9%)

Query: 31  MIHQHS-KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSY 89
           M  + S  G   WLP G+   + +   +R+     G   +   ++++ D     G     
Sbjct: 1   MFAKTSLSGFPEWLPEGRIIENAILDHLRKTFELHGFASLETRSVETLDELQRKGETSKE 60

Query: 90  GKEMLR----LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL--PFTFYQIQLKFRDEL 143
              + R      +R+ K       H ++     R  I++  +L  PF  YQIQ  +R E 
Sbjct: 61  VYILNRLQELKEERSSKKERPLGLHFDLTVPFARFVIENAGSLAFPFRRYQIQKVWRGER 120

Query: 144 RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN---------------------KMFVSYL 182
                  R REF+  D            H                               
Sbjct: 121 PQDG---RFREFMQADIDIVGDGALAFHHEVELPLVMIEALSGLPIPPVTVLVNNRKVVQ 177

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSHE--FIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
                +G++S+     +      +  E     + + G +     K      I  E+   D
Sbjct: 178 GFCEGIGIESVEDALRAIDKLDKIGAEGVMAEMLENGISAEQGEKLLEMAAIRVESGVTD 237

Query: 241 DIISLNSIVEQWTAPYAATSDVHNEKLFDSLPE--NKRVSARGIEVGHIFYFGTKYSLPM 298
            +++L    E   A       +       +          ARG++      + T      
Sbjct: 238 AVLALGVDNETLRAGLEELDALLIAATKRAPGRVVADLKIARGLDYYTGSVYETVLEGHE 297

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHD 358
                 + G+   +            ++  +               +    S + +  +D
Sbjct: 298 DLGSICSGGRYDSLATNGKRTYPGVGLSIGVSRLVSRILGQELVHASRSVPSCVLVAVND 357

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +  R   + I   L   G          + G Q   AD  G P           +    +
Sbjct: 358 EEHRSEADDIAYALRSRGIPTEVSPNSAKFGKQIKFADKRGIPFVWF----TNEEGVSTV 413

Query: 419 KHRLTGIRED 428
           K   TG + +
Sbjct: 414 KDIRTGEQVE 423


>gi|56965072|ref|YP_176804.1| histidyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|81678761|sp|Q5WCR7|SYH2_BACSK RecName: Full=Histidyl-tRNA synthetase 2; AltName:
           Full=Histidine--tRNA ligase 2; Short=HisRS 2
 gi|56911316|dbj|BAD65843.1| histidyl-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 425

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/418 (12%), Positives = 114/418 (27%), Gaps = 33/418 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADR 99
            +LP  +     +   + E   + G   M  P +   DL   + G      KEM  L DR
Sbjct: 14  DYLPEDESVRVWLRRELEEVFQQYGCKPMETPMINYTDLLASKYGGGAEIKKEMYTLTDR 73

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             +A+            +   +    +           +            R REF   D
Sbjct: 74  GKRALALRYDLTIPFAKVMAMNPDIRKPFKRYEIGKVFR-----DGPIKAGRFREFTQCD 128

Query: 160 AYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG--------------- 203
                +  P             + RI   + ++    +  +G +                
Sbjct: 129 VDVAGVDSPLAEAELLEMATEVFRRIGLNMTIQYNNRKLLTGMLDICGVSKDQHSAVILI 188

Query: 204 ---GDLSHEFIVLADTGETQVFCS------KDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
               +   +  V+ +  E  V         +               D  +   + E    
Sbjct: 189 LDKREKIGDKQVVNELKEMGVDGKAISKIAQWLKQMSQSGIVDFATDRPTTPIMAEGIAE 248

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
                  +    +      N  ++ RG+E+     +    +     +  G+ G+      
Sbjct: 249 LQELEEALRYLNIDSQCTFNPFLA-RGLEIYTGTVYELFLTEGAIQSSVGSGGRYDQAIS 307

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
           G  G         +          +  +     K  L       Q  ++    + + L K
Sbjct: 308 GLTGEEQPMPTVGISFGIDVIYTALKMEGRINQKPLLDYYVIPLQKQKE-ALAVASSLRK 366

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G  V  +   +++      A+    P  +++G + V+  + ++K+  TG  + +   
Sbjct: 367 QGFRVDVEFKNKKLTKALDRANKEKIPFVILIGEEEVASGRYKLKNMETGAEQHVPFS 424


>gi|238928176|ref|ZP_04659936.1| serine--tRNA ligase [Selenomonas flueggei ATCC 43531]
 gi|238884136|gb|EEQ47774.1| serine--tRNA ligase [Selenomonas flueggei ATCC 43531]
          Length = 423

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +        + +    + G  EM  P + +    + +G+   + ++M +L   
Sbjct: 164 FYKGLGARLERACINFMMDLHAEKHGYTEMLAPYIVNEASMIGTGQLPKFAEDMFKLE-- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E   T+  R  I     LP  +      FR E     R   G++R  +F
Sbjct: 222 -GLDYYLVPTAEVPTTNYHRDEILDAEQLPEYYTSYTACFRAEAGSAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFI 211
             K      +TPE S      M  +   +   L L    ++  +G +          E  
Sbjct: 281 N-KVELIKFVTPETSWDELESMVAAAEDVLKILELPYRVIQLCTGDMSFTSAKTYDIEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           + A     ++    +  D+     N  +
Sbjct: 340 MPAQDKYREISSCSNCTDYQARRANIKY 367


>gi|83319858|ref|YP_424781.1| seryl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|123535469|sp|Q2SR32|SYS_MYCCT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|83283744|gb|ABC01676.1| seryl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 422

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 82/245 (33%), Gaps = 14/245 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K + ++  ++ +   + G  E+  P + +    + +G+   + ++M ++    
Sbjct: 168 IYTGLGSKLVRSIADLLLKRHEKHGYKEIFCPLIVNKSAMLGTGQLPKFSEDMYQV---- 223

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
                  PT E  +T++  + I +Y  LP  +      FR E     R   G++R  +F 
Sbjct: 224 -GEQYLIPTSEVPLTNLHANEILAYDVLPLKYTSFTQCFRQEAGSAGRDTKGMIRLHQFN 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +        E        +      + +   L    +   SG IG   +     E   
Sbjct: 283 KVELVKIVHPEESMNEL-EMLIKDAEDVLNMFDLPYRVVELCSGDIGFSSAKTYDLEVWF 341

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                  ++    +  DF   +  T F D  S   +V        A   +    L +   
Sbjct: 342 PEQNKYREISSCSNCTDFQARNMQTRFKDKDSKIKLVHTLNGSGVAVDRLIAAILENYWD 401

Query: 273 ENKRV 277
             K +
Sbjct: 402 GEKLI 406


>gi|288802310|ref|ZP_06407750.1| serine--tRNA ligase [Prevotella melaninogenica D18]
 gi|288335277|gb|EFC73712.1| serine--tRNA ligase [Prevotella melaninogenica D18]
          Length = 429

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 10/221 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   +E  ++G +E+  P + + +    +G+      +M  
Sbjct: 164 GAGFPLYIGKMARFQRALEAFFLDEARKSGYLEVQPPLVVNQESGQATGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+IFR  I + ++LP         FR E     +   G+ R
Sbjct: 223 --HANLDDLYLIPTAEVPVTNIFRDEILNEQDLPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL--SHE 209
             +F   +    D  PE S  S ++M      +  +L L    +R   G I       ++
Sbjct: 281 LHQFDKVEIVRIDK-PEHSYQSLDEMLDHVEGLLKKLELPYHILRLCGGDISFTAALCYD 339

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           F V +   E  +  S         +         + +  +E
Sbjct: 340 FEVWSAAQERWLEVSSVSNFESYQANRLHCRFRHAEDKKIE 380


>gi|256964070|ref|ZP_05568241.1| seryl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|307274105|ref|ZP_07555314.1| seryl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|256954566|gb|EEU71198.1| seryl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|306509230|gb|EFM78291.1| seryl-tRNA synthetase [Enterococcus faecalis TX0855]
          Length = 423

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 76/214 (35%), Gaps = 13/214 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++    +  
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQV---AESD 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILEAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F       +        +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFSDAEHSYEELEKMT-NNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
               ++    +  DF        + D        
Sbjct: 345 KMYREISSCSNCEDFQARRALIRYRDKTGHVQYA 378


>gi|198276280|ref|ZP_03208811.1| hypothetical protein BACPLE_02472 [Bacteroides plebeius DSM 17135]
 gi|198270722|gb|EDY94992.1| hypothetical protein BACPLE_02472 [Bacteroides plebeius DSM 17135]
          Length = 454

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 43/126 (34%), Gaps = 1/126 (0%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ +   +         + A++ 
Sbjct: 329 FGMEGMSGVGISFGADRIYDVLNQLDLYPKEAVNGTQLLFVNFGEAEA-AYVLPVLAQVR 387

Query: 374 KVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
             G          ++  Q + A+    P   IVG   + + KV +K+  +G +  ++ +E
Sbjct: 388 AAGIRAEIYPDAAKMKKQMSYANAKMVPFVAIVGENEMKEGKVMLKNMTSGEQSLVTPDE 447

Query: 434 VINYAS 439
           ++   +
Sbjct: 448 LVAAIN 453


>gi|296116157|ref|ZP_06834775.1| histidyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
 gi|295977263|gb|EFG84023.1| histidyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
          Length = 417

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/390 (12%), Positives = 107/390 (27%), Gaps = 29/390 (7%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G  E + P  +   ++  +     D   KEM    DR  +++   P     +     ++
Sbjct: 35  YGFDEWATPIFEDTRVFKRTLGDTSDVVSKEMYTFEDRGGESLTLRPEGTASVCRALVTN 94

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             + ++LP   +     FR E   +    R R+F    A         +      M    
Sbjct: 95  GLT-QSLPQKVFYAGPMFRYERPQKG---RYRQFHQIGAELLGPAEPLADAEVIAMGRDI 150

Query: 182 LR----------IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           L+            + LG         +  I         + +++           +D  
Sbjct: 151 LQALGIARDTVLELNTLGDIESRNAWRAALITYFSERRDELSSESLNRLERNPLRILDSK 210

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP-ENKRVSARGIEV--GHIF 288
            P +     D   ++  +      +    D+        +P        RG++      F
Sbjct: 211 SPQDRVVVGDAPLISGYLNPQAQAF--WDDLRKTLDILGVPFRENPRIVRGLDYYSHTAF 268

Query: 289 YFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
            F T+          G        +MG     A+     +   S                
Sbjct: 269 EFVTERLGTQGTVLAGGRYDGLVSEMGGPQTPAIGWAGGIERLSMLLDEAPAAPRPVVVV 328

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
                     +        +   L            G  +  +   A+ L     +++G 
Sbjct: 329 PMG-------EGAAATGITVLQALRGAHIRAETSYRG-NLKRRMERANRLNATHAIVIGE 380

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
             V+   V+++    G + ++++++V  + 
Sbjct: 381 DEVARGVVQVRDLDKGQQAEVAMDQVTGFL 410


>gi|317131290|ref|YP_004090604.1| histidyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315469269|gb|ADU25873.1| histidyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 429

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/401 (14%), Positives = 106/401 (26%), Gaps = 31/401 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE--SGRYDSYGKEMLRLADRNDKAMIYG 107
              V    R      G  E+  PT +  +L+        D   KEM    DR  +++   
Sbjct: 22  WQYVEQTARRTAATFGFEEIRFPTFEYTELFSRGVGDTTDVVQKEMYTFEDRGGRSITLR 81

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P            +  +   LP   + +   FR E        R REF    A  F    
Sbjct: 82  PEGTASTVRALLQNGLAGGPLPLKLFYLISCFRGERPQAG---RLREFHQFGAELFGAAG 138

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG--PIGGDLSHEFIVLADTG---ETQVF 222
             +     ++          LG+K + +   S   P      H  +         E    
Sbjct: 139 AAAD---VELIELAGAALKALGVKDLRLELNSIGCPTCRKDYHAALKAYFKARETELCDD 195

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV----- 277
           C       P+   +       ++       T         H E +   L +  +      
Sbjct: 196 CKNRLERNPMRLLDCKVPTCKAIAKDAPVVTDYLCDDCKAHFEDVKARLTDAGQTFVLNP 255

Query: 278 -SARGIEV--GHIFYFGTKY---SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIES 331
              RG++     +F F  +    ++     + G   +     +   G G       ++  
Sbjct: 256 RIVRGLDYYTRTVFEFVDEAQGLTVCGGGRYDGLVSELGGPSLPGLGFGMGLERLLILME 315

Query: 332 SHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ 391
           S        P  +                               G     D  G  + +Q
Sbjct: 316 SQGCAFPPAPKGLVYIGAIGGPASQKAAALARTL-------RAAGIAAGTDLAGRSVKAQ 368

Query: 392 FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
              AD  GF   V++G   + + +  +K         + LE
Sbjct: 369 MKYADKQGFAYAVMLGDAELENGEAALKALRGDGARTVPLE 409


>gi|332822166|ref|XP_003310918.1| PREDICTED: probable histidyl-tRNA synthetase, mitochondrial isoform
           1 [Pan troglodytes]
 gi|119582423|gb|EAW62019.1| histidyl-tRNA synthetase-like, isoform CRA_a [Homo sapiens]
 gi|194373607|dbj|BAG56899.1| unnamed protein product [Homo sapiens]
          Length = 481

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 70/463 (15%), Positives = 126/463 (27%), Gaps = 55/463 (11%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS 88
           TG +   S+G     P      + +  ++     R GA  M  P  +  +   E   Y  
Sbjct: 28  TGAVRCQSQGTRDLSPQHMVVREKILDLVISCFKRHGAKGMDTPAFELKETLTEK--YGE 85

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
               M  L D+  + +                     +      Y +   +R E  P   
Sbjct: 86  DSGLMYDLKDQGGELLSLRYDLTVPFARYLAM----NKVKKMKRYHVGKVWRRE-SPTIV 140

Query: 149 VMRSREFLMKDAYSFDL-TPEGSKHSYNKMFVSYLR-------------------IFHRL 188
             R REF   D        P        K+    L                    +F   
Sbjct: 141 QGRYREFCQCDFDIAGQFDPMIPDAECLKIMCEILSGLQLGDFLIKVNDRRIVDGMFAVC 200

Query: 189 GLKSIPMRAESGPI-------GGDLSHEFIVL-------ADTGETQVFCS-------KDF 227
           G+     RA    I         D+ HE +V        AD     V C        + F
Sbjct: 201 GVPESKFRAICSSIDKLDKMAWKDVRHEMVVKKGLAPEVADRIGDYVQCHGGVSLVEQMF 260

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
            D  +       + +  L  + E  T    A     +  L   L     V    + +   
Sbjct: 261 QDPRLSQNKQALEGLGDLKLLFEYLTLFGIADKISFDLSLARGLDYYTGVIYEAVLLQTP 320

Query: 288 FYFGTKY----SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
              G +     S+     + G  G     +        + +    I    + +     + 
Sbjct: 321 TQAGEEPLNVGSVAAGGRYDGLVG-MFDPKGHKVPCVGLSIGVERIFYIVEQRMKTKGEK 379

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPL 402
           V   +  +          ++   K+ A L   G           ++ +Q    +  G PL
Sbjct: 380 VRTTETQVFVATPQKNFLQER-LKLIAELWDSGIKAEMLYKNNPKLLTQLHYCESTGIPL 438

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            VI+G + + +  ++I+   +     +  E  +     R S +
Sbjct: 439 VVIIGEQELKEGVIKIRSVASREEVAIKRENFVAEIQKRLSES 481


>gi|330793434|ref|XP_003284789.1| histidine-tRNA ligase [Dictyostelium purpureum]
 gi|325085283|gb|EGC38693.1| histidine-tRNA ligase [Dictyostelium purpureum]
          Length = 481

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/438 (10%), Positives = 113/438 (25%), Gaps = 40/438 (9%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            + P      + V   I++   R GA+ +  P  +  D    +G+Y    K +  LAD+ 
Sbjct: 48  DYNPSQMTIREQVFDTIKQVFKRHGAVTIETPVFELKDTL--TGKYGEDSKLIYDLADQG 105

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDA 160
            +                  +              +       + RF      +F +   
Sbjct: 106 GEICSLRYDLTVPFARYVAMNRVQNIKRYHIARVYRRDNPVMTKGRFREFYQCDFDIAGE 165

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
           Y   +          ++        + + L    +      I G  + +F  +    +  
Sbjct: 166 YDVMVPDAECLRIICEILDQVKVGKYVIKLNHRKLLDAIFAICGVPADKFRTICSAVDKL 225

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV-----------HNEKLFD 269
               K   D              ++   +E++        ++            N+   D
Sbjct: 226 ---DKSPWDEVRKEMVEVKGLDGAIADKIEEFVKLSGPPFELLEKLRTSGMCDSNKDAVD 282

Query: 270 SLPENKRVSARGIEVGHIFYFGTKYSLPMSATF------------KGADGKDHYVQMGSY 317
           +L + + +      +G         SL     +            +   G          
Sbjct: 283 ALAQLETLFGYLEALGCTERILFDLSLARGLDYYTGIIYEAVLTQQDRVGSIAAGGRYDG 342

Query: 318 GIGAMRV-------VAAVIESSHDGKGIIWPDSVAPFKISLI--NIKAHDQVCRDACEKI 368
            +G            +  IE         +  +    + +     +   D+       KI
Sbjct: 343 LVGMYGKKDVPAVGFSIGIERIFTILEEEYTKNKLKIRENQTQVYVVQMDKELLKDRLKI 402

Query: 369 YARLSKVGCDVFWDDMGEQIGS--QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + L   G +  +           Q   A+    PL +++G   +  + + +K+     +
Sbjct: 403 CSELWNAGINAEFAY-KVNPKVAPQLNSANESLTPLTILIGKTEIETNTLSVKNMKDSKQ 461

Query: 427 EDMSLEEVINYASHRFSN 444
             +  E          +N
Sbjct: 462 ISIPRENFTEKIKELLNN 479


>gi|121634630|ref|YP_974875.1| histidyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|166228588|sp|A1KT95|SYH_NEIMF RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|120866336|emb|CAM10078.1| putative histidyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|308389027|gb|ADO31347.1| putative histidyl-tRNA synthetase [Neisseria meningitidis alpha710]
          Length = 431

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 114/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVNRWTRAYGYRQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIIAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEDKLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGERA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRTQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++ E++ +    
Sbjct: 414 QTVAAEDLTHTLQQ 427


>gi|239825598|ref|YP_002948222.1| seryl-tRNA synthetase [Geobacillus sp. WCH70]
 gi|259511672|sp|C5D340|SYS_GEOSW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|239805891|gb|ACS22956.1| seryl-tRNA synthetase [Geobacillus sp. WCH70]
          Length = 424

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 9/177 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +      G  E+  P L +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGLGARLERALINFMLDVHIEEFGYQEILPPYLVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                     PT E  +T++ R  I S  +LP  +      FR E     R   G++R  
Sbjct: 223 T---DDYFLIPTAEVPVTNLHRDEILSAEDLPIYYVAYSACFRAEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           +F   +   F    +       K+     RI   LGL    +   +G +G   +  +
Sbjct: 280 QFNKVELVKFVKPEDSYDEL-EKLTNQAERILQLLGLPYRVVCLCTGDLGFSSAKTY 335


>gi|156352979|ref|XP_001622858.1| predicted protein [Nematostella vectensis]
 gi|156209483|gb|EDO30758.1| predicted protein [Nematostella vectensis]
          Length = 371

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDM---GEQIGSQFAVADLLGFPLQVIVGSKFV 411
            A  +   +   ++   L + G +V  +D     E  G      D +G P  + +    +
Sbjct: 283 DASKKDLMEVSHQLATELRQAGINVTCEDSATPEECYGY----NDGIGTPYCITIMESTL 338

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
           S+  +  + R T ++E + + +V+N      
Sbjct: 339 SNGIIAFRSRNTTLQEYLHISDVLNTVQQHL 369


>gi|295402717|ref|ZP_06812659.1| seryl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109164|ref|YP_003987480.1| seryl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
 gi|294975248|gb|EFG50884.1| seryl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|311214265|gb|ADP72869.1| seryl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
          Length = 424

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 9/166 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +      G  E+  P L +      +G+   + ++  R+ 
Sbjct: 163 FVFYKGLGARLERALINFMLDVHIEEFGYQEILPPYLVNRASMTGTGQLPKFEEDAFRIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSR 153
                     PT E  +T++ R  I S  +LP  +      FR E         G++R  
Sbjct: 223 TE---DYFLIPTAEVPVTNLHRDEILSAEDLPIYYAAYSACFRAEAGAAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
           +F   +   F    +       K+     RI   LGL    +   +
Sbjct: 280 QFNKVELVKFVKPEDSYDEL-EKLTNQAERILQLLGLPYRVVCLCT 324


>gi|255693386|ref|ZP_05417061.1| serine--tRNA ligase [Bacteroides finegoldii DSM 17565]
 gi|260620864|gb|EEX43735.1| serine--tRNA ligase [Bacteroides finegoldii DSM 17565]
          Length = 424

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 15/223 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  L      +     G   +   G +    +     +E  ++
Sbjct: 133 METELPKDALPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARKS 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PT+ +A     +G+      +M          +   PT E  +T+I+R  I  
Sbjct: 193 GYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCE---VDDLYLIPTAEVPVTNIYRDVILE 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M   
Sbjct: 250 EKQLPIMNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRIDK-PEHSKQSHQEMLDH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQV 221
              +  +L L    +R   G +        +F V ++  +  +
Sbjct: 309 VEGLLQKLELPYRILRLCGGDMSFTAALCFDFEVYSEAQKRWL 351


>gi|212692033|ref|ZP_03300161.1| hypothetical protein BACDOR_01528 [Bacteroides dorei DSM 17855]
 gi|237724685|ref|ZP_04555166.1| seryl-tRNA synthetase [Bacteroides sp. D4]
 gi|265755598|ref|ZP_06090219.1| seryl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
 gi|212665425|gb|EEB25997.1| hypothetical protein BACDOR_01528 [Bacteroides dorei DSM 17855]
 gi|229436880|gb|EEO46957.1| seryl-tRNA synthetase [Bacteroides dorei 5_1_36/D4]
 gi|263234204|gb|EEZ19797.1| seryl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
          Length = 424

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 68/192 (35%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E   +G  E+  PT+ +      +G+      +M  
Sbjct: 164 GAGFPVYKGKGARLQRALINFFLDEARASGYEEIMPPTVVNTASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CE---VDDLYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL--SHE 209
             EF   +    D  PE SK S+ +M      +  +L L    +R   G +        +
Sbjct: 281 LHEFSKVELVRIDK-PEHSKQSHQEMLDHVEGLLKKLELPYRILRLCGGDMSFTAALCFD 339

Query: 210 FIVLADTGETQV 221
           F V ++  +  +
Sbjct: 340 FEVYSEAQQRWL 351


>gi|328479960|gb|EGF49006.1| prolyl-tRNA synthetase [Lactobacillus rhamnosus MTCC 5462]
          Length = 40

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 1  MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIY 40
          M++S+ F+P  +E P  AE  SHK+MLR+G + Q   G+Y
Sbjct: 1  MKQSRMFIPTEKEVPSSAEAKSHKMMLRSGFVRQVQAGVY 40


>gi|310639562|ref|YP_003944320.1| seryl tRNA synthetase [Paenibacillus polymyxa SC2]
 gi|309244512|gb|ADO54079.1| Seryl tRNA synthetase [Paenibacillus polymyxa SC2]
          Length = 427

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 9/167 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +  +   G  EM  P + + D    +G+   + +++ +L D 
Sbjct: 165 FYKGLGARLERALINFMMDLHSSEHGYEEMLPPYIVNRDSLYGTGQLPKFEEDLFKLRD- 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+  R  I +   LP  +      FR E     R   G++R  +F
Sbjct: 224 --TEYYLIPTAEVPVTNYHREEIMNADQLPKYYVAYSSCFRSEAGSAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
              +           +        +  R+   LGL    +   +G +
Sbjct: 282 NKVEMLKLVHPDTSYEELEKMT-NNAERVLQLLGLPYRVLALCTGDM 327


>gi|257087920|ref|ZP_05582281.1| seryl-tRNA synthetase [Enterococcus faecalis D6]
 gi|256995950|gb|EEU83252.1| seryl-tRNA synthetase [Enterococcus faecalis D6]
          Length = 423

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 76/214 (35%), Gaps = 13/214 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++    +  
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQV---AESD 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F       +        +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVRFSDAEHSYEELEKMT-NNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
               ++    +  DF        + D        
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGHVQYA 378


>gi|308066924|ref|YP_003868529.1| Seryl-tRNA synthetase (serine--tRNA ligase) [Paenibacillus polymyxa
           E681]
 gi|171704681|gb|ACB54661.1| seryl tRNA synthetase [Paenibacillus polymyxa]
 gi|305856203|gb|ADM67991.1| Seryl-tRNA synthetase (Serine--tRNA ligase) [Paenibacillus polymyxa
           E681]
          Length = 427

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 9/167 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +  +   G  EM  P + + D    +G+   + +++ +L D 
Sbjct: 165 FYKGLGARLERALINFMMDLHSSEHGYEEMLPPYIVNRDSLYGTGQLPKFEEDLFKLRD- 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T+  R  I +   LP  +      FR E     R   G++R  +F
Sbjct: 224 --TEYYLIPTAEVPVTNYHREEIMNAEQLPKYYVAYSSCFRSEAGSAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
              +           +        +  R+   LGL    +   +G +
Sbjct: 282 NKVEMLKLVHPDTSYEELEKMT-NNAERVLQLLGLPYRVLALCTGDM 327


>gi|150006127|ref|YP_001300871.1| seryl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|254883514|ref|ZP_05256224.1| seryl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294775307|ref|ZP_06740830.1| serine--tRNA ligase [Bacteroides vulgatus PC510]
 gi|319641697|ref|ZP_07996380.1| seryl-tRNA synthetase [Bacteroides sp. 3_1_40A]
 gi|149934551|gb|ABR41249.1| seryl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|254836307|gb|EET16616.1| seryl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294450884|gb|EFG19361.1| serine--tRNA ligase [Bacteroides vulgatus PC510]
 gi|317386671|gb|EFV67567.1| seryl-tRNA synthetase [Bacteroides sp. 3_1_40A]
          Length = 424

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 68/192 (35%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E   +G  E+  PT+ +      +G+      +M  
Sbjct: 164 GAGFPVYKGKGARLQRALINFFLDEARASGYEEIMPPTVVNTASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CE---VDDLYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL--SHE 209
             EF   +    D  PE SK S+ +M      +  +L L    +R   G +        +
Sbjct: 281 LHEFSKVELVRIDK-PEHSKQSHQEMLDHVEGLLKKLELPYRILRLCGGDMSFTAALCFD 339

Query: 210 FIVLADTGETQV 221
           F V ++  +  +
Sbjct: 340 FEVYSEAQQRWL 351


>gi|148284858|ref|YP_001248948.1| histidyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
 gi|166228589|sp|A5CEP8|SYH_ORITB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|146740297|emb|CAM80678.1| histidyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
          Length = 423

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/402 (12%), Positives = 124/402 (30%), Gaps = 20/402 (4%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           + ++ R      G   +S P ++  +++  +     D   KEM    D+ ++++   P  
Sbjct: 25  IISVSRNLSKLYGFQPISTPIIEYTEIFNRTLGKDSDVLSKEMYVFLDKGNRSVSLRPEF 84

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDLTPEG 169
              +      +    + LP  ++     FR +        R R+F   +     D +P  
Sbjct: 85  TASIMRAVIYNNLQNKKLPLKYFSSGPAFRYDNPQAG---RQRQFHQINLECIGDGSPFS 141

Query: 170 SKHSYNKMFVSYLRIF---HRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKD 226
                   +    ++          +     ES         E+     T E        
Sbjct: 142 DAEIVLLAYDILKKLNLVDKVNLEINSLGCMESRAKYQQALVEYFSKYRT-ELSQDSQSR 200

Query: 227 FMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA------R 280
            ++ P+   ++       +++        Y   +  + +K+ + L              R
Sbjct: 201 LIENPLRILDSKNLHDKKISASAPSIHDYYTIEARGYFDKVLEYLEFCGIKYTINANLVR 260

Query: 281 GIE--VGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
           G++     +F + +   +   +T  G    D   +     + + + +   I  +   + +
Sbjct: 261 GLDYYCHTVFEYVSTQ-IGAQSTVLGGGRYDGLFEQMGGKLASGKKMLPAIGFAAGIERL 319

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
               +  P  +  I I   D+        +  +L         D     I  +   A+ +
Sbjct: 320 ALLTNYTPVDVRPIVIIPVDEEYHQHGIILLQKLRNNNITTVIDLQD-SISKRLNRANHI 378

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
                + +G+  + +    IK   T     +   E+++Y  +
Sbjct: 379 KASKVIFIGAIEMREQSYRIKDLDTSNECVIIHNELLSYLQN 420


>gi|2501006|sp|P70076|SYHC_FUGRU RecName: Full=Histidyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|1524039|emb|CAA91012.1| histidyl-tRNA synthetase [Takifugu rubripes]
          Length = 519

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/469 (10%), Positives = 117/469 (24%), Gaps = 69/469 (14%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
            + + +KG   + P      + V   I     R GA  +  P  +  +    +G+Y    
Sbjct: 59  FVLKTAKGTRDYNPKQMAIREKVFNTIVSCFKRHGAETIDTPVFELKETL--TGKYGEDS 116

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           K +  L D+  + +                +  +           +       R R+   
Sbjct: 117 KLIYDLKDQGGELLSLRYDLTVPFARYLAMNKITNIKRYHIAKVYRRDNPAMTRGRYREF 176

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              +F +   Y   +         +++         R+ +    +      + G   + F
Sbjct: 177 YQCDFDIAGQYDAMIPDAECLKIVHEILSELDLGDFRIKVNDRRILDGMFAVCGVPDNMF 236

Query: 211 IVLADTGET-QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFD 269
             +  T +       +   +  +  +    +    +   V        A   + ++K+  
Sbjct: 237 RTICSTVDKLDKLPWEAVKNEMVNEKGLSEEAADQIGVYVGMQGGMDLAERLLQDQKMCQ 296

Query: 270 SLPEN------------------------KRVSARGIEVGHIFYFGTKYSLPMSATFKGA 305
           S                                ARG++      +    +    A     
Sbjct: 297 STQACAGLTDIKLLFSYLQLFQVTDKVVFDLSLARGLDYYTGIIYEAILTQAGVAPVAPE 356

Query: 306 DG---KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
                            G  R    V      G+ +         +     ++   +   
Sbjct: 357 TSNEAPTEECVTVGSVAGGGRYDGLVGMFDPKGRKVPCVGVSIGIERIFSIMEQKAEAST 416

Query: 363 D------------ACEK--------IYARLSKVGCDVFWDDMGEQIGSQFAVA------- 395
           +            A +K        +   L   G               +  +       
Sbjct: 417 EKIRTTEVQVMVAAAQKNLLEERLRLITELWNAGIKAEL---------MYKKSPKLLSQL 467

Query: 396 ---DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
              +  G PL  I+G + + +  V++++  T    D+S  ++I     R
Sbjct: 468 QHCEESGIPLVAILGEQELKNGVVKLRNVATRDEVDISRADLIAEIKKR 516


>gi|16329819|ref|NP_440547.1| seryl-tRNA synthetase [Synechocystis sp. PCC 6803]
 gi|2501054|sp|P73201|SYS_SYNY3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|1652304|dbj|BAA17227.1| seryl-tRNA synthetase [Synechocystis sp. PCC 6803]
          Length = 430

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 68/207 (32%), Gaps = 12/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + E     G  E+  P L ++D  + +G+   + +E  +        + 
Sbjct: 178 GAALERALINFMLERHIGVGYQEIMPPILVNSDSLLGTGQLPKFAEESFQC---RGDDLW 234

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  +     LP         FR E     R   G++R  +F   +  
Sbjct: 235 LIPTAEVPVTNLYRDEVLDLEQLPIKHCAYTPCFRREAGSYGRDTKGLIRLHQFNKVELV 294

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                 E +      +      I   L L    +   +G +G   +     E  + +   
Sbjct: 295 KLVKPEESAAEHQALVAD-AEAILQALELPYRVVELCTGDLGFGAAKCYDLEVWLPSANT 353

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +F DF     N  + +   
Sbjct: 354 YREISSCSNFHDFQARRANIRYKEKGK 380


>gi|237715588|ref|ZP_04546069.1| seryl-tRNA synthetase [Bacteroides sp. D1]
 gi|262408597|ref|ZP_06085143.1| seryl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|294647519|ref|ZP_06725099.1| serine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294808139|ref|ZP_06766907.1| serine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|298481433|ref|ZP_06999625.1| serine--tRNA ligase [Bacteroides sp. D22]
 gi|229444297|gb|EEO50088.1| seryl-tRNA synthetase [Bacteroides sp. D1]
 gi|262353462|gb|EEZ02556.1| seryl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|292637131|gb|EFF55569.1| serine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294444646|gb|EFG13345.1| serine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|295086896|emb|CBK68419.1| seryl-tRNA synthetase [Bacteroides xylanisolvens XB1A]
 gi|298272297|gb|EFI13866.1| serine--tRNA ligase [Bacteroides sp. D22]
          Length = 424

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 15/223 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  L      +     G   +   G +    +     +E  ++
Sbjct: 133 METELPKDALPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARKS 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PT+ +A     +G+      +M          +   PT E  +T+I+R  I  
Sbjct: 193 GYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCE---VDDLYLIPTAEVPVTNIYRDVILE 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M   
Sbjct: 250 EKQLPIMNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRIDK-PEHSKQSHQEMLDH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQV 221
              +  +L L    +R   G +        +F V ++  +  +
Sbjct: 309 VEGLLQKLELPYRILRLCGGDMSFTAALCFDFEVYSEAQKRWL 351


>gi|6996014|ref|NP_002100.2| histidyl-tRNA synthetase, cytoplasmic [Homo sapiens]
 gi|135123|sp|P12081|SYHC_HUMAN RecName: Full=Histidyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|32460|emb|CAA77607.1| histidyl-tRNA synthetase [Homo sapiens]
 gi|15080052|gb|AAH11807.1| Histidyl-tRNA synthetase [Homo sapiens]
 gi|51873908|gb|AAH80514.1| Histidyl-tRNA synthetase [Homo sapiens]
 gi|119582427|gb|EAW62023.1| histidyl-tRNA synthetase, isoform CRA_c [Homo sapiens]
 gi|261857896|dbj|BAI45470.1| histidyl-tRNA synthetase [synthetic construct]
 gi|325463225|gb|ADZ15383.1| histidyl-tRNA synthetase [synthetic construct]
          Length = 509

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/488 (12%), Positives = 135/488 (27%), Gaps = 64/488 (13%)

Query: 11  LQENPRDAEIA----SHKLMLRTG---------MIHQHSKGIYSWLPLGQKALDNVNAII 57
           L++    AE+     +  L L+            + +  KG   + P      + V  +I
Sbjct: 21  LKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKGTRDYSPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +  +  G+Y    K +  L D+  + +             
Sbjct: 81  IRCFKRHGAEVIDTPVFELKETLM--GKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEGSKHSYNK 176
                 +   L         K      P     R REF   D     +  P        K
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLK 193

Query: 177 MFVSYL---RIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +    L   +I   L   +     +    I G    +F  +  + +     S + +   +
Sbjct: 194 IMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEM 253

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDV-------HNEKLFDSLPENKRVSAR----G 281
             E     ++        Q     +    +        N++  + L + K +       G
Sbjct: 254 VGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFG 313

Query: 282 IEVGHIFYFGTKYSLPMSATFKGAD---------------------GKDHYVQMGSYGIG 320
           I+    F       L                               G  +   +G +   
Sbjct: 314 IDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPK 373

Query: 321 AMRVVAAVIESSHDGKGIIW------PDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             +V    +    +    I        +       + + + +  +   +   K+ + L  
Sbjct: 374 GRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWD 433

Query: 375 VGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G           ++ +Q    +  G PL  I+G + + D  ++++   +    D+  E+
Sbjct: 434 AGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRRED 493

Query: 434 VINYASHR 441
           ++     R
Sbjct: 494 LVEEIKRR 501


>gi|197097766|ref|NP_001126914.1| histidyl-tRNA synthetase, cytoplasmic [Pongo abelii]
 gi|71153562|sp|Q5R4R2|SYHC_PONAB RecName: Full=Histidyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|55733140|emb|CAH93254.1| hypothetical protein [Pongo abelii]
          Length = 509

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/490 (12%), Positives = 132/490 (26%), Gaps = 68/490 (13%)

Query: 11  LQENPRDAEIA----SHKLMLRTG---------MIHQHSKGIYSWLPLGQKALDNVNAII 57
           L++    AE+     +  L L+            + +  KG   + P      + V  +I
Sbjct: 21  LKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKGTRDYSPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +  +  G+Y    K +  L D+  + +             
Sbjct: 81  IRCFKRHGAEVIDTPVFELKETLM--GKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEGSKHSYNK 176
                 +   L         K      P     R REF   D     +  P        K
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLK 193

Query: 177 MFVSYLRIFHR-------------LGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQV 221
           +    L                   G+ +I   ++S    I   +     V  +  + ++
Sbjct: 194 IMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEM 253

Query: 222 FCSKDFM-------------------------DFPIPSENTDFDDIISLNSIVEQWTAPY 256
              K                            D  +       + +  L  + E  T   
Sbjct: 254 VGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQSKQALEGLGDLKLLFEYLTLFG 313

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY----SLPMSATFKGADGKDHYV 312
                  +  L   L     V    + +      G +     S+     + G  G     
Sbjct: 314 IDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPK 373

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
                 +G    +      S   + +   +       + + + +  +   +   K+ + L
Sbjct: 374 GRKVPCVGLS--IGVERIFSIVEQRLEALEEKVRTTETQVLVASAQKKLLEERLKLVSEL 431

Query: 373 SKVGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
              G           ++ +Q    +  G PL  I+G + + D  ++++   +    D+  
Sbjct: 432 WDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELEDGVIKLRSVTSREEVDVRR 491

Query: 432 EEVINYASHR 441
           E+++     R
Sbjct: 492 EDLVEEIKRR 501


>gi|315644417|ref|ZP_07897550.1| seryl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315280167|gb|EFU43460.1| seryl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 427

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 9/167 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    + + + +   ++ G  EM  P + + D    +G+   + +++ +++D 
Sbjct: 165 FYKGLGARLERALISFMMDLHSDKHGYEEMLPPYIVNRDSLYGTGQLPKFEEDLFKISD- 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREF 155
                   PT E  +T+  R  I +  +LP  +      FR E         G++R  +F
Sbjct: 224 --TDYYLIPTAEVPVTNYHREEILNIEDLPKYYVAYSSCFRSEAGAAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
              +                       R+   L L    M   +G +
Sbjct: 282 NKVEMVKIVNPETSFDELEKMTTD-AERVLQLLNLPYRVMALCTGDM 327


>gi|160887095|ref|ZP_02068098.1| hypothetical protein BACOVA_05111 [Bacteroides ovatus ATCC 8483]
 gi|237721366|ref|ZP_04551847.1| seryl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|293369930|ref|ZP_06616501.1| serine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|299148593|ref|ZP_07041655.1| serine--tRNA ligase [Bacteroides sp. 3_1_23]
 gi|156107506|gb|EDO09251.1| hypothetical protein BACOVA_05111 [Bacteroides ovatus ATCC 8483]
 gi|229449162|gb|EEO54953.1| seryl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|292634976|gb|EFF53497.1| serine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|298513354|gb|EFI37241.1| serine--tRNA ligase [Bacteroides sp. 3_1_23]
          Length = 424

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 15/223 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  L      +     G   +   G +    +     +E  ++
Sbjct: 133 METELPKDALPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARKS 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PT+ +A     +G+      +M          +   PT E  +T+I+R  I  
Sbjct: 193 GYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCE---VDDLYLIPTAEVPVTNIYRDVILE 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M   
Sbjct: 250 EKQLPIMNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRIDK-PEHSKQSHQEMLDH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQV 221
              +  +L L    +R   G +        +F V ++  +  +
Sbjct: 309 VEGLLQKLELPYRILRLCGGDMSFTAALCFDFEVYSEAQKRWL 351


>gi|329930188|ref|ZP_08283801.1| serine--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328935210|gb|EGG31691.1| serine--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 427

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 9/167 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    + + + +   ++ G  EM  P + + D    +G+   + +++ +++D 
Sbjct: 165 FYKGLGARLERALISFMMDLHSDKHGYEEMLPPYIVNRDSLYGTGQLPKFEEDLFKISD- 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREF 155
                   PT E  +T+  R  I +  +LP  +      FR E         G++R  +F
Sbjct: 224 --TDYYLIPTAEVPVTNYHREEILNSEDLPKYYVAYSSCFRSEAGAAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
              +                       R+   L L    M   +G +
Sbjct: 282 NKVEMVKIVHPETSFDELEKMTAD-AERVLQLLNLPYRVMTLCTGDM 327


>gi|256618437|ref|ZP_05475283.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256761947|ref|ZP_05502527.1| seryl-tRNA synthetase [Enterococcus faecalis T3]
 gi|257084092|ref|ZP_05578453.1| seryl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257088576|ref|ZP_05582937.1| seryl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|300862206|ref|ZP_07108286.1| serine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|307276339|ref|ZP_07557465.1| seryl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|312903849|ref|ZP_07763021.1| seryl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|256597964|gb|EEU17140.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256683198|gb|EEU22893.1| seryl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256992122|gb|EEU79424.1| seryl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|256997388|gb|EEU83908.1| seryl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|295112414|emb|CBL31051.1| seryl-tRNA synthetase [Enterococcus sp. 7L76]
 gi|300848731|gb|EFK76488.1| serine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|306507004|gb|EFM76148.1| seryl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|310632793|gb|EFQ16076.1| seryl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|315143211|gb|EFT87227.1| seryl-tRNA synthetase [Enterococcus faecalis TX2141]
 gi|315160827|gb|EFU04844.1| seryl-tRNA synthetase [Enterococcus faecalis TX0645]
 gi|315171391|gb|EFU15408.1| seryl-tRNA synthetase [Enterococcus faecalis TX1342]
 gi|315577010|gb|EFU89201.1| seryl-tRNA synthetase [Enterococcus faecalis TX0630]
          Length = 423

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 76/214 (35%), Gaps = 13/214 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++    +  
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQV---AESD 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILEAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F       +        +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFSDAEHSYEELEKMT-NNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
               ++    +  DF        + D        
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGHVQYA 378


>gi|290961832|ref|YP_003493014.1| histidyl tRNA synthetase [Streptomyces scabiei 87.22]
 gi|260651358|emb|CBG74480.1| histidyl tRNA synthetase [Streptomyces scabiei 87.22]
          Length = 420

 Score = 64.8 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/406 (13%), Positives = 114/406 (28%), Gaps = 18/406 (4%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAM 104
               + + A +R+    +G   +  P  ++ +L+        D   KEM     +    +
Sbjct: 22  LAVREAIAAPLRD----SGYGYIETPGFENVELFARGVGESTDIVTKEMYAFETKGGDRL 77

Query: 105 IYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-S 162
              P     +             NLP   +     +R E   +    R R F    A   
Sbjct: 78  ALRPEGTASVLRAALEANLHKTGNLPVKLWYSGSYYRYERPQKG---RYRHFSQVGAEAI 134

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQ 220
               P            +Y  +  +     +    +    P+      +F+   D  E  
Sbjct: 135 GAEDPALDAELIILADQAYRSLGLQNFRILLNSLGDKECRPVYRAALQDFLRGLDLDEDT 194

Query: 221 VFCSK----DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
           +  +       +D    +      D   L   +      Y             +  E+  
Sbjct: 195 LRRADINPLRVLDDKREAVQKQLGDAPLLRDYLCDACKAYHEEVRELITAAGVAF-EDDL 253

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F   +    S +  G  G+   +     G     V  A+        
Sbjct: 254 KLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGPALPSVGWALGVDRTVLA 313

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                 ++     + +      +  R         L KVG    +   G+ +      A+
Sbjct: 314 LEAEGVALELPATTSVYAVPLGEEARRLLFAKVTELRKVGIAADFAYGGKGLKGAMKNAN 373

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             G    V+ G + +++  V++K   +G +  + + E++     R 
Sbjct: 374 RSGARYTVVAGERDLAEGVVQLKDMESGEQVAVGVNEIVAELEARL 419


>gi|260171593|ref|ZP_05758005.1| seryl-tRNA synthetase [Bacteroides sp. D2]
 gi|315919907|ref|ZP_07916147.1| seryl-tRNA synthetase [Bacteroides sp. D2]
 gi|313693782|gb|EFS30617.1| seryl-tRNA synthetase [Bacteroides sp. D2]
          Length = 424

 Score = 64.8 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 15/223 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  L      +     G   +   G +    +     +E  ++
Sbjct: 133 METELPKDALPHWELAKKYDLIDFDLGVKITGAGFPVYKGKGAQLQRALINFFLDEARKS 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PT+ +A     +G+      +M          +   PT E  +T+I+R  I  
Sbjct: 193 GYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCE---VDDLYLIPTAEVPVTNIYRDVILE 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M   
Sbjct: 250 EKQLPIMNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRIDK-PEHSKQSHQEMLDH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDL--SHEFIVLADTGETQV 221
              +  +L L    +R   G +        +F V ++  +  +
Sbjct: 309 VEGLLQKLELPYRILRLCGGDMSFTAALCFDFEVYSEAQKRWL 351


>gi|261403954|ref|YP_003240195.1| seryl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261280417|gb|ACX62388.1| seryl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 427

 Score = 64.8 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 9/167 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    + + + +   ++ G  EM  P + + D    +G+   + +++ +++D 
Sbjct: 165 FYKGLGARLERALISFMMDLHSDKHGYEEMLPPYIVNRDSLYGTGQLPKFEEDLFKISD- 223

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREF 155
                   PT E  +T+  R  I +  +LP  +      FR E         G++R  +F
Sbjct: 224 --TDYYLIPTAEVPVTNYHREEILNSEDLPKYYVAYSSCFRSEAGAAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
              +                       R+   L L    M   +G +
Sbjct: 282 NKVEMVKIVHPETSFDELEKMTAD-AERVLQLLNLPYRVMTLCTGDM 327


>gi|304437508|ref|ZP_07397466.1| serine--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369558|gb|EFM23225.1| serine--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 423

 Score = 64.8 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +        + +    + G  EM  P + +    + +G+   + ++M +L   
Sbjct: 164 FYKGLGARLERACINFMMDLHAEKHGYTEMLAPYIVNEASMIGTGQLPKFAEDMFKLE-- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E   T+  R  I     LP  +      FR E     R   G++R  +F
Sbjct: 222 -GLDYYLVPTAEVPTTNYHRDEILDAEQLPEYYTSYTACFRAEAGSAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFI 211
             K      +TPE S      M  +   +   L L    ++  +G +          E  
Sbjct: 281 N-KVELIKFVTPETSWDELESMVTAAEDVLKILELPYRVIQLCTGDMSFTSAKTYDIEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           + A     ++    +  D+     N  +
Sbjct: 340 MPAQDKYREISSCSNCTDYQARRANIKY 367


>gi|225849034|ref|YP_002729198.1| histidyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643080|gb|ACN98130.1| histidyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 409

 Score = 64.8 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/406 (13%), Positives = 104/406 (25%), Gaps = 30/406 (7%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYG 107
              +    RE   +    E+ +P ++   L+  S     D   KEM    D+  + +   
Sbjct: 21  YRYIVDTFRETFEKYNFKEIILPFVEDISLFKRSVGEATDIVQKEMYVFLDKGGREVALR 80

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTP 167
           P         +              +     FR E        R R+F    A  F ++ 
Sbjct: 81  PEGTASCVRAYIEEKMYAEGGYHKLFYEGAMFRYERPQAG---RYRQFHQIGAEIFGVSS 137

Query: 168 EGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCSK 225
             +      M    L+         I    +  S         +++   + G  +  C  
Sbjct: 138 VLADTELISMVYKILKKLKIDFKLEINSLGDFQSRKTYTQELIKYLKQYENGLCET-CKS 196

Query: 226 DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLF--------DSLPENKRV 277
                P+   +   +    +     +     +  S+    +L         D +   + V
Sbjct: 197 RINTNPLRVLDCKVESCKQITKDAPKIIDYLSEESEKRFTQLKEYLKALNIDFVENPRLV 256

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                    +F F T   +    T       D+ V+            AA IE       
Sbjct: 257 RGLDYYTDTVFEFTTDQ-IGAQGTVAAGGRYDNLVEQLGGPPTPALGFAAGIERLILLVK 315

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADL 397
            +  +      I L                    L   G           + S    AD 
Sbjct: 316 DLPSEKPLITVIPLTP------DYNIQALSFSESLRNSGIKTETLLKEGSLKSMMKTADK 369

Query: 398 LGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM-SLEEVINYASHRF 442
           L     V +  K       E+K   +G +E   + E+ +     + 
Sbjct: 370 LKSDYVVFISDK------YELKEMKSGNQEIFYTPEDTLEAVKDKI 409


>gi|237708975|ref|ZP_04539456.1| LOW QUALITY PROTEIN: seryl-tRNA synthetase [Bacteroides sp.
           9_1_42FAA]
 gi|229457037|gb|EEO62758.1| LOW QUALITY PROTEIN: seryl-tRNA synthetase [Bacteroides sp.
           9_1_42FAA]
          Length = 304

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 68/192 (35%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E   +G  E+  PT+ +      +G+      +M  
Sbjct: 44  GAGFPVYKGKGARLQRALINFFLDEARASGYEEIMPPTVVNTASGYGTGQLPDKEGQMYH 103

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 104 CE---VDDLYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 160

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL--SHE 209
             EF   +    D  PE SK S+ +M      +  +L L    +R   G +        +
Sbjct: 161 LHEFSKVELVRIDK-PEHSKQSHQEMLDHVEGLLKKLELPYRILRLCGGDMSFTAALCFD 219

Query: 210 FIVLADTGETQV 221
           F V ++  +  +
Sbjct: 220 FEVYSEAQQRWL 231


>gi|93005483|ref|YP_579920.1| histidyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
 gi|122989937|sp|Q1QD17|SYH_PSYCK RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|92393161|gb|ABE74436.1| histidyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
          Length = 434

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/407 (11%), Positives = 109/407 (26%), Gaps = 23/407 (5%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           + +I+     R G   + +P ++  DL+  +  G  D   KEM    D++D         
Sbjct: 22  LESILANVLGRYGYEHIRLPIVEQTDLFARAIGGATDIVEKEMYSFTDKSDPPTPLTLRP 81

Query: 111 EEVMTDIFR-SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT-PE 168
           E     +   +     R      + I   FR E   +    +  +  ++   S       
Sbjct: 82  EGTAGAVRAVNEHNLLRGDTPKLWYIGPMFRYERPQKGRYRQFHQIGVESFGSALPDADA 141

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD------------T 216
                 + M+             +     +      +    ++                T
Sbjct: 142 ELIAMTHLMWQELGLKDEMRLELNSLGEIDERHAYREALVTYLTDKQEQLDEDSKRRLTT 201

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
              ++  SK+     +  +     D +   S+          T    N ++   L     
Sbjct: 202 NPLRILDSKEASTQALLVDAPKLADFLGEESVAHFEQVQAYLTELGINFEINPHLVRGLD 261

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM----GSYGIGAMRVVAAVIESS 332
              + +        G++ ++     + G  G+          G                 
Sbjct: 262 YYNKTVFEWVTDKLGSQATVCAGGRYDGLVGQLKSADNRDGKGDNKPVKSEPAVGFAMGL 321

Query: 333 HDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS--KVGCDVFWDDMGEQIGS 390
                ++   +      +             A       L   +    V        + +
Sbjct: 322 ERLLLLMEVVAPIADMPACDVFVVAHPEVYSAGISYAQNLRYSRPDLRVKM-ASATSLKA 380

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
           Q   AD  G  L VI+  + + D  + IK   TG ++  + + +++ 
Sbjct: 381 QMKKADKSGAALTVIIAQQELDDKTISIKDMQTGEQKTAAQDWLLDK 427


>gi|308811216|ref|XP_003082916.1| P0627E03.18 gene product (ISS) [Ostreococcus tauri]
 gi|116054794|emb|CAL56871.1| P0627E03.18 gene product (ISS) [Ostreococcus tauri]
          Length = 585

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/393 (14%), Positives = 119/393 (30%), Gaps = 44/393 (11%)

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P L+S  L+      +    ++    D+ D+ +   P        +     KS   LP  
Sbjct: 206 PVLESEALFTRK-AGEEITTQLYNFVDKGDRRVALRPELTPSFARLILQQGKS-LALPAK 263

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLK 191
           ++ I   +R E   R    R RE    +     ++      +  ++  +    F R+G+ 
Sbjct: 264 WFAIGQCWRYERMTRG---RRREHYQWNMDIVGVS---GIEAEAELLAAITTFFKRVGVT 317

Query: 192 --SIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              + ++  S  +  ++   + + +D               P      +  ++      +
Sbjct: 318 SADVGIKVSSRKLLQEVLTRYGIGSDAFAPVCVVVDKIEKLPREKIEDELRELGVAEGAI 377

Query: 250 EQWTAP----------------------------YAATSDVHNEKLFDSLPENKRVSARG 281
           E   A                             YA      +  +FD+          G
Sbjct: 378 EGILAATQMRTVEELEALIGPDAEAVKDLKQLFAYADAYGYRDWLVFDACVVRGLAYYTG 437

Query: 282 IEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
           +        G   ++     +    G          G G      AVI      KG++  
Sbjct: 438 VVFEGFDRAGELRAICGGGRYDMLLGALGGENQPMVGFGFG---DAVIVELLKDKGLMPD 494

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
            S    +  +  +    +  R A  ++ A L + G  V      ++    F  A+ +G  
Sbjct: 495 FSRGDTQDLVFPL---SESLRPAAMRVAASLRESGRTVDLVLEDKKAKWAFKQAERIGAE 551

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
             +++G K      V +K   T    D+ ++++
Sbjct: 552 RVILLGEKEWEAGNVRVKDLATREEVDVKIDDL 584


>gi|290475179|ref|YP_003468065.1| putative Proline--tRNA ligase [Xenorhabdus bovienii SS-2004]
 gi|289174498|emb|CBJ81292.1| putative Proline--tRNA ligase [Xenorhabdus bovienii SS-2004]
          Length = 383

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/406 (15%), Positives = 127/406 (31%), Gaps = 86/406 (21%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           GI  +LP+G K L  +     +E  +     + +  +   D+     ++     +     
Sbjct: 39  GIPLFLPIGNKILTAIERCCIKEAEKFEFNHIDMTQIIPTDILSLGEQFHDGFLDQFVFL 98

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
               +      T E ++ +  +  ++SYR LP         +R +L    G++++REF M
Sbjct: 99  KGKMERYHLLSTPEPLLLNFLKEGLQSYRQLPIKMMFSAKFYR-QLSQVQGILKTREFRM 157

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
                        + +        L + +                   +  EF    ++ 
Sbjct: 158 LAGACLHERVSEKELAIEFFHKYTLHLAN----------------VFSIPIEFTYNEESK 201

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRV 277
             + F      +      +     +       ++  A Y + S                 
Sbjct: 202 FYEYFYIHTDGEELFNDVSAVSLAMAYEYGQEKKVIARYCSNS----------------- 244

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
                                         ++   Q  +YG+G  R+   +++   D KG
Sbjct: 245 -----------------------------NRNMNAQFVTYGLGLQRLFFVILDCYRDNKG 275

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-------GEQIGS 390
              P  V PF I++I ++  D      C +    L      +  DD         E+   
Sbjct: 276 FNLPKPVRPFDIAIIPLRDED---ISRCLEFANCLQIPPDRMLIDDRCKTQVFEKERF-- 330

Query: 391 QFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI--REDMSLEEV 434
               AD LG P ++ +     S+ +V +K+R TG   +E   L ++
Sbjct: 331 ----ADYLGIPQKLFI-----SNQEVFVKNRDTGTFLKEVFQLSDI 367


>gi|228473639|ref|ZP_04058391.1| histidine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275011|gb|EEK13821.1| histidine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
          Length = 454

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/449 (11%), Positives = 118/449 (26%), Gaps = 55/449 (12%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRY---- 86
           P G +          + +   IR+   + G   +  P  +  +        E  R     
Sbjct: 7   PKGTRDFSPSEVAKRNYIVQTIRKNFEQFGFQPIETPCFEKTETLMGKYGEEGDRLIFRI 66

Query: 87  --------DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLK 138
                   +   +             I G      +T  F  ++  ++N     ++    
Sbjct: 67  LDAGDFLSEVPAEVYQSANSAKLAPYISGKALRYDLTVPFARYVVQHQNEISFPFKRYQI 126

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLG---LKSIPM 195
                  R    R REF   DA          +  + +++          G     +   
Sbjct: 127 QPVWRADRPQKGRYREFYQCDADVVGARGLWQEVEFVQLYDRVFTDLQVKGVTIKMNHRK 186

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP 255
                        + I      +      K+ ++  +       + I  +  +       
Sbjct: 187 ILSGFAEIIGAPDKLIDFTVALDKLDKIGKEKVEEEMIQRGITPEAIAKIQPVFSLEGDF 246

Query: 256 --------------------YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
                                A    ++ +     L          +  G  +Y G  + 
Sbjct: 247 SQKIAQLKDILSTSPTGLEGIADLEFIYTQTQLLGLQTAALELEVTLARGLNYYTGAIFE 306

Query: 296 LPMSATF-KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI-----IWPDSVAPFKI 349
           +        G+ G        +   G   +    I    D   +               +
Sbjct: 307 VAAPKEVALGSIGGGGRYDELTEIFGLKGMSGIGISFGLDRIYLVLEQLDLFPKTLDNTL 366

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++ I   ++    A  K+  +L   G          ++  Q + AD       +++G +
Sbjct: 367 DVLCINFGEKEAL-ASFKVIQQLRAKGYRAELYPESTKLKKQLSYADSRQVRYVILIGEE 425

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            +S++   +K+ LTG +    L+E++N+ 
Sbjct: 426 ELSNATAVLKNMLTGEQNTYPLQEIVNHI 454


>gi|78043693|ref|YP_361479.1| seryl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
 gi|123770534|sp|Q3A8Q5|SYS_CARHZ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|77995808|gb|ABB14707.1| seryl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 424

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 76/239 (31%), Gaps = 15/239 (6%)

Query: 14  NPRDAEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMS 70
            P+       +L +                +  LG      V   + +      G +E+ 
Sbjct: 135 TPKAHWEIGEELDILDFARGSKVTGARFTFYKGLGAMLERAVINFMLDLHTREHGYVEVF 194

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P + +AD  + +G+   + ++M +L           PT E  +T+++R  I     LP 
Sbjct: 195 PPFIVNADSMMGTGQLPKFAEDMFKLE---GLNYYLIPTAEVPVTNLYREEILDGDKLPI 251

Query: 131 TFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
                   FR E         G++R  +F   +   F       +           R+  
Sbjct: 252 YHCAYSACFRAEAGAAGRDTRGLIRQHQFNKVELVKFVKPENSYEELEKLTRD-AERVLQ 310

Query: 187 RLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            LGL    +   +G +G   +     E  + +     ++    +F DF        + +
Sbjct: 311 LLGLPYRVVVLCTGDLGFSAAKTYDIEVWLPSYNDYKEISSCSNFEDFQARRAKIRYKE 369


>gi|313141618|ref|ZP_07803811.1| histidyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313130649|gb|EFR48266.1| histidyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
          Length = 437

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 64/419 (15%), Positives = 117/419 (27%), Gaps = 39/419 (9%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
             + +I+     + G   +  P L+ A++  + G  D   KEM    D   + +      
Sbjct: 28  QMLKSIVTS-FEKFGFSPIETPHLEYAEILKKQG-SDEIQKEMYHFIDHGGREVALRFDL 85

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +      + K+   LPF  Y I   FR E   +    R REF   D         GS
Sbjct: 86  TLPLARFISQY-KNELGLPFKRYCIGNVFRGERAQKG---RYREFTQCDFDFIGTQSIGS 141

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK----- 225
                       +    LGLK+  +   +  I   L        DT E      K     
Sbjct: 142 DAEI---IQVIFQSLSDLGLKNFTIHINNRKIFNGLCESLNAKEDTTEILRIIDKIDKIG 198

Query: 226 -----------------------DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                                  DF+      ++  F  ++S      Q         + 
Sbjct: 199 QDSVSKELQEKTSLTLTQIQTLLDFIALKQEGDSLKFLSLLSPYKAYNQTLKEGLEELES 258

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-SLPMSATFKGADGKDHYVQMGSYGIGA 321
             E L   +P++       I  G  +Y G  Y +        G+          +     
Sbjct: 259 LCEILAPLIPQSFYQINLSIARGLGYYTGIIYETTLGDLPTLGSVCSGGRYDNLTQNFSN 318

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            ++         D       +       +                     L ++G  +  
Sbjct: 319 EKMSGVGASIGLDRLLAGLEELGLITSSTPAKAILIPLNNLQYAYTTAKSLRELGIKIEV 378

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED-MSLEEVINYAS 439
                +    F  A+  G+   +I G    +     +K+   G +++ +SLE++ +   
Sbjct: 379 YPEVIKPQKAFKYANNKGYEWVIITGESEQATHSASLKNMQNGEQQNQLSLEKIADILK 437


>gi|148240241|ref|YP_001225628.1| seryl-tRNA synthetase [Synechococcus sp. WH 7803]
 gi|166223303|sp|A5GN16|SYS_SYNPW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|147848780|emb|CAK24331.1| Seryl-tRNA synthetase [Synechococcus sp. WH 7803]
          Length = 425

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 8/169 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    +   + +     G  E+  P L ++     SG+   + +E  R AD     + 
Sbjct: 173 GARLERALINFMLDLHTGKGYREVLPPVLVNSASLTGSGQLPKFAEESFRCAD---DDLW 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T + R  I     LP  +      FR E     R   G++R  +F   + Y
Sbjct: 230 LTPTAEVPLTSLHRDEIIPLDQLPLRYVAYSPCFRREAGSYGRDTRGLIRLHQFNKVELY 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            F   P+ +  ++  +      +   L L    +   +G +G   +  +
Sbjct: 290 WFVH-PDHADEAHAAITADAEAVLQALELPYRVLELCTGDLGFSAARTY 337


>gi|224418081|ref|ZP_03656087.1| histidyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253827410|ref|ZP_04870295.1| histidyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253510816|gb|EES89475.1| histidyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
          Length = 433

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 64/419 (15%), Positives = 117/419 (27%), Gaps = 39/419 (9%)

Query: 51  DNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
             + +I+     + G   +  P L+ A++  + G  D   KEM    D   + +      
Sbjct: 24  QMLKSIVTS-FEKFGFSPIETPHLEYAEILKKQG-SDEIQKEMYHFIDHGGREVALRFDL 81

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
              +      + K+   LPF  Y I   FR E   +    R REF   D         GS
Sbjct: 82  TLPLARFISQY-KNELGLPFKRYCIGNVFRGERAQKG---RYREFTQCDFDFIGTQSIGS 137

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSK----- 225
                       +    LGLK+  +   +  I   L        DT E      K     
Sbjct: 138 DAEI---IQVIFQSLSDLGLKNFTIHINNRKIFNGLCESLNAKEDTTEILRIIDKIDKIG 194

Query: 226 -----------------------DFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
                                  DF+      ++  F  ++S      Q         + 
Sbjct: 195 QDSVSKELQEKTSLTLTQIQTLLDFIALKQEGDSLKFLSLLSPYKAYNQTLKEGLEELES 254

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-SLPMSATFKGADGKDHYVQMGSYGIGA 321
             E L   +P++       I  G  +Y G  Y +        G+          +     
Sbjct: 255 LCEILAPLIPQSFYQINLSIARGLGYYTGIIYETTLGDLPTLGSVCSGGRYDNLTQNFSN 314

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            ++         D       +       +                     L ++G  +  
Sbjct: 315 EKMSGVGASIGLDRLLAGLEELGLITSSTPAKAILIPLNNLQYAYTTAKSLRELGIKIEV 374

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED-MSLEEVINYAS 439
                +    F  A+  G+   +I G    +     +K+   G +++ +SLE++ +   
Sbjct: 375 YPEVIKPQKAFKYANNKGYEWVIITGESEQATHSASLKNMQNGEQQNQLSLEKIADILK 433


>gi|333030166|ref|ZP_08458227.1| seryl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
 gi|332740763|gb|EGJ71245.1| seryl-tRNA synthetase [Bacteroides coprosuis DSM 18011]
          Length = 424

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 70/197 (35%), Gaps = 13/197 (6%)

Query: 15  PRDAE---IASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
           P DA      + K  L      +     G   +   G +    +     +E    G +E+
Sbjct: 138 PADAIPHWELAKKYDLIDFELGVKITGAGFPVYKGKGARLQRALINFFLDEARDAGYLEI 197

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P + +A     +G+      +M          +   PT E  +T+I+R  I + + LP
Sbjct: 198 EPPYVVNAASGFGTGQLPDKEGQMYHATA---DDLYLIPTAEVPVTNIYRDVILNEKELP 254

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E     +   G+ R  +F   +    D TPE S  S  +M      + 
Sbjct: 255 IKNCAYSACFRREAGSYGKDVRGLNRLHQFNKVEIVRID-TPEHSYESLKEMIAHVEGLV 313

Query: 186 HRLGLKSIPMRAESGPI 202
           ++LGL    +R   G +
Sbjct: 314 NKLGLPYRILRLCGGDM 330


>gi|332234662|ref|XP_003266525.1| PREDICTED: probable histidyl-tRNA synthetase, mitochondrial isoform
           2 [Nomascus leucogenys]
          Length = 481

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/458 (13%), Positives = 121/458 (26%), Gaps = 45/458 (9%)

Query: 29  TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS 88
           TG +   S+G     P      + +  ++     R GA  M  P  +  +   E   Y  
Sbjct: 28  TGAVRCQSQGTRDLSPQHMVVREKILDLVISCFKRHGAKGMDTPAFELKETLTEK--YGE 85

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
               M  L D+  + +                +              + +    ++ R+ 
Sbjct: 86  DSGLMYDLKDQGGELLSLRYDLTVPFARYLAMNKVKKMKRYHVGKVWRRESPAIVQGRYR 145

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYN---------------KMFVSYLRIFHRLGLKSI 193
                +F +   +   +                                 +F   G+   
Sbjct: 146 EFCQCDFDIAGQFDPMIPDAECLKIMCEILSGLQLGDFLIKVNDRRIVDGMFAVCGVPES 205

Query: 194 PMRAESGPI-------GGDLSHEFIVL-------ADTGETQVFCS-------KDFMDFPI 232
             RA    I         D+ HE +         AD     V C        + F D  +
Sbjct: 206 KFRAICSSIDKLDKMAWKDVRHEMVAKKGLAPEVADRIGDYVQCHGGVSLVEQMFQDPRL 265

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGT 292
                  + +  L  + E  T    A     +  L   L     V    + +      G 
Sbjct: 266 SQNKQALEGLGDLKLLFEYLTLFGIADKISFDLSLARGLDYYTGVIYEAVLLQTPIQAGE 325

Query: 293 KY----SLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFK 348
                 S+     + G  G  H           + +    I    + +     + V   +
Sbjct: 326 DPLNVGSVAAGGRYDGLVGMFHPK-GHKVPCVGLSIGVERIFYIVEQRMKTKGEKVRTTE 384

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVG 407
             +          ++   K+ A L   G           ++ +Q    +  G PL VI+G
Sbjct: 385 TQVFVATPQKNFLQER-LKLIAELWDSGIKAEMLYKNNPKLLTQLHYCESTGIPLVVIIG 443

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            + + +  ++I+   +     +  E ++     R S +
Sbjct: 444 EQELKEGVIKIRSVASREEVAIKRENLVAEIQKRLSES 481


>gi|228998112|ref|ZP_04157711.1| Histidyl-tRNA synthetase 1 [Bacillus mycoides Rock3-17]
 gi|228761647|gb|EEM10594.1| Histidyl-tRNA synthetase 1 [Bacillus mycoides Rock3-17]
          Length = 433

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/424 (14%), Positives = 120/424 (28%), Gaps = 39/424 (9%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     E   R G   +  PTL   +L   + G      KEM  L D+
Sbjct: 14  DYLPAEQLLRNKIKRACEETFERYGCKPLETPTLNMYELMAYKYGGGAEILKEMYTLRDQ 73

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
            ++ +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 74  GNREIALRYDLTIPFAKVVA--MNPDIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 128

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
                +    ++       F  +  +   + ++    +  +G +      +     +   
Sbjct: 129 VDIVGVESVIAEAELMAMAFDLFKTLNLDVTIQYNNRKLLTGILKSVEIQD-----EQTN 183

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA---------TSDVHNEKLFD 269
             +          I     D      +N  +E       +              N  + +
Sbjct: 184 DVILSLDKLEKIGIDGVRKDLQSRGIVNGTIEVVCHTVESCMTLELNEFKQIFSNSLVTE 243

Query: 270 SLPENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            + E +++       GI+   +F       L M                 S G G  R  
Sbjct: 244 GINELQQLQQYLLALGIQDNTVFNPFLARGLTMYTGTVYEIFLTDGSITSSIGSGG-RYD 302

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLS 373
             +    +D              +    +   +     A            C +I   L 
Sbjct: 303 NIIGAFRNDNTSYPTIGISFGLDVIYTALTQKETESTCADIFIIPINTEVECLRITQLLR 362

Query: 374 KVG-CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
                 V  +  G ++      A+    P  +I+G   +S   + +++   G    + L 
Sbjct: 363 SKSTFKVELELAGRKLKRSLNYANKENIPYVLIIGDTEISTETIVLRNMKEGTEMKLPLS 422

Query: 433 EVIN 436
            + +
Sbjct: 423 CIED 426


>gi|284929345|ref|YP_003421867.1| seryl-tRNA synthetase [cyanobacterium UCYN-A]
 gi|284809789|gb|ADB95486.1| seryl-tRNA synthetase [cyanobacterium UCYN-A]
          Length = 427

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 69/206 (33%), Gaps = 12/206 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      + + + ++   +G IE+  P L +++    +G+   + +E        +  + 
Sbjct: 176 GAALERALISYMLDQHIASGYIEVMPPILVNSNALRGTGQLPKFAEESFFC---REDDLW 232

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  + +++ + I     L          FR E     +   G++R  +F   +  
Sbjct: 233 LSPTAEVPVMNLYSNEILEKEALSIRHCAFTPCFRREAGSYGKDTRGLIRLHQFNKVELV 292

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                 +       ++  +   I   L L    +   +G +G   +     E  + +   
Sbjct: 293 KIVHPQDSEIEH-QRLVENVESILQNLKLPYRILELCTGDLGFGAAKCYDLEVWLPSSNS 351

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDII 243
             ++    +  DF     N  F +  
Sbjct: 352 YREISSCSNCWDFQARRANIRFREKG 377


>gi|48477584|ref|YP_023290.1| histidyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|73919755|sp|Q6L1Q5|SYH_PICTO RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|48430232|gb|AAT43097.1| histidyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 423

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 57/414 (13%), Positives = 129/414 (31%), Gaps = 40/414 (9%)

Query: 55  AIIREEQN---RTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMIYGPTH 110
             I++  +     G   +  P+L+S DL+  +SG      ++     D+  + +   P  
Sbjct: 22  DFIKKMMDTAISFGYKMIDFPSLESMDLYRLKSG--TELVEQTFSFTDKGGREVTMIPEA 79

Query: 111 EEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
                 +  S  +    +P  ++ I   +R E        R RE +  +A  F      +
Sbjct: 80  TPSTMRMLTS--RKDIKMPARWFSIPKVWRYEEPQEG---RYREHIQFNADMFGADSPEA 134

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIP------------MRAESGPIGGDLSHEFIVLADTGE 218
                 +  + L      G   I                 + P+      +     D  +
Sbjct: 135 DAEIIGLAATILDNLGLSGQYEINVNDRYLMELILRDLGSNNPVDLFPVIDRFKKMDLTD 194

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------- 271
            +    KD  D       +   + I +N  VE+    YA       ++L D+        
Sbjct: 195 FKKRLLKDLDDDASEKLISLLMNRIDIND-VERLLNGYANDVMERVKRLKDTFALTSKYT 253

Query: 272 -----PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                 +   V       G +F          +    G       + +          + 
Sbjct: 254 KSKLNIDLSVVRGLSYYTGIVFEAFDISGELRAILGGGRYDNLSNLFINESIPAVGFAIG 313

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
             +      +  +W       +  ++NI +  +   +    I  ++   G     +    
Sbjct: 314 DAVIELLLKRNNLWNYKDKRKRYYVVNISSSPEAHIE----ILNKIRGSGNIAISEVNKR 369

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           ++ +    A+ +     +I+G + +S  K+ IK+  T  + +M++++ IN  + 
Sbjct: 370 RMQTIIKYAESIKCDFLIIIGDRELSSKKMTIKNLRTQEQAEMNIDDFINNINS 423


>gi|227518019|ref|ZP_03948068.1| seryl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|307287079|ref|ZP_07567152.1| seryl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|227074541|gb|EEI12504.1| seryl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|306501858|gb|EFM71148.1| seryl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|315151232|gb|EFT95248.1| seryl-tRNA synthetase [Enterococcus faecalis TX0012]
 gi|315165765|gb|EFU09782.1| seryl-tRNA synthetase [Enterococcus faecalis TX1302]
          Length = 423

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 76/207 (36%), Gaps = 13/207 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++    +  
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQV---AESD 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILEAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F       +        +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFSDAEHSYEELEKMT-NNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDI 242
               ++    +  DF        + D 
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDK 371


>gi|332822160|ref|XP_003310917.1| PREDICTED: histidyl-tRNA synthetase, cytoplasmic-like isoform 4
           [Pan troglodytes]
          Length = 480

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 58/455 (12%), Positives = 125/455 (27%), Gaps = 51/455 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
            + +  KG   + P      + V  II     R GA  +  P  +  +  +  G+Y    
Sbjct: 25  FVLKTPKGTRDYSPRQMAVREKVFDIIIRCFKRHGAEVIDTPVFELKETLM--GKYGEDS 82

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           K +  L D+  + +                   +   L         K      P     
Sbjct: 83  KLIYDLKDQGGELLSLRYDLTVPFA-----RYLAMNKLTNIKRYHIAKVYRRDNPAMTRG 137

Query: 151 RSREFLMKDAYSF-DLTPEGSKHSYNKMFVSYL---RIFHRLGLKSIPMRAE-SGPIGGD 205
           R REF   D     +  P        K+    L   +I   L   +     +    I G 
Sbjct: 138 RYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGV 197

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV--- 262
              +F  +  + +     S + +   +  E     ++        Q     +    +   
Sbjct: 198 SDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQD 257

Query: 263 ----HNEKLFDSLPENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGAD-------- 306
                N++  + L + K +       GI+    F       L                  
Sbjct: 258 PKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQ 317

Query: 307 -------------GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW------PDSVAPF 347
                        G  +   +G +     +V    +    +    I        +     
Sbjct: 318 AGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRT 377

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIV 406
             + + + +  +   +   K+ + L   G           ++ +Q    +  G PL  I+
Sbjct: 378 TETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAII 437

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G + + D  ++++   +    D+  E+++     R
Sbjct: 438 GEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRR 472


>gi|313672443|ref|YP_004050554.1| seryl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939199|gb|ADR18391.1| seryl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 421

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 69/205 (33%), Gaps = 12/205 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    +   + +     G  E+  P L +A     +G+   + +E+ +        +
Sbjct: 168 LGSRLERALINFMLDTHIAKGYTEIIPPLLVNAKAMTGTGQLPKFEEELFKCE---RDEL 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I+   I  Y  LP  F      FR E     +   G++R  +F   + 
Sbjct: 225 YLIPTAEVPVTNIYADEIIDYDKLPLNFVSYTPCFRREAGSYGKDVRGLIRQHQFNKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADT 216
                     +     +  +   I   LGL    ++  SG +G         E  +    
Sbjct: 285 VKIVEPERSMEEL-EILTDNAAEILRLLGLPYRIIKLCSGDLGFSSSITYDIEVWLPGQN 343

Query: 217 GETQVFCSKDFMDFPIPSENTDFDD 241
              ++    +F DF        + D
Sbjct: 344 CYREISSCSNFKDFQSRRAKIRYRD 368


>gi|297198348|ref|ZP_06915745.1| histidyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197714402|gb|EDY58436.1| histidyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 420

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 59/420 (14%), Positives = 117/420 (27%), Gaps = 24/420 (5%)

Query: 38  GIYSWLP----LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           G Y  +P          + + A +R     +G   +  P  +S +L+        D   K
Sbjct: 9   GTYDLIPPDSAKFLAVREAIAAPLRT----SGYGYIETPGFESVELFARGVGESTDIVTK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY-RNLPFTFYQIQLKFRDELRPRFGVM 150
           EM     +    +   P     +             NLP   +     +R E   +    
Sbjct: 65  EMYAFETKGGDKLALRPEGTASVLRAALEANLHKLGNLPVKLWYSGSYYRYERPQKG--- 121

Query: 151 RSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLS 207
           R R F    A       P            +Y  +  R     +    +    P+     
Sbjct: 122 RYRHFSQVGAEAIGAEDPALDAELIILADQAYRSLGLRNFRILLNSLGDKECRPVYRAAL 181

Query: 208 HEFIVLADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
            +F+   D  E      ++   +   D     +    D  +  + + +   A +    ++
Sbjct: 182 QDFLRGLDLDEDTLRRAEINPLRVLDDKRESVQKQLGDAPLLRDYLCDACKAYHEEVREL 241

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
                     + K V          F F        SA   G  G+   +     G    
Sbjct: 242 ITAAGVAFEDDPKLVRGLDYYTRTTFEFVHDGLGSQSA--VGGGGRYDGLSEMIGGPALP 299

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V  A+               +     + +      +  R         L KVG    + 
Sbjct: 300 SVGWALGVDRTVLALEAEGVELELPSTTAVFAVPLGEEARRVLFAKVTELRKVGIAADFA 359

Query: 383 DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             G+ +      A+  G    V+ G + +++  V++K   +G +  + + E++     R 
Sbjct: 360 YGGKGLKGAMKNANRSGARYTVVAGERDLAEGVVQLKDMESGEQSAIGVNEIVAELESRL 419


>gi|322783273|gb|EFZ10857.1| hypothetical protein SINV_08930 [Solenopsis invicta]
          Length = 608

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 64/482 (13%), Positives = 125/482 (25%), Gaps = 60/482 (12%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWL----PLGQK------------ALDNVNAII 57
           + + AE  +  L L+  +  +   G    L    P G +             L+ + ++ 
Sbjct: 137 DKKIAEEVAKLLELKAQLGEE--NGCPHKLILKTPKGTRDYNPEQMALRLGVLEKIISV- 193

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  D+   +G+Y    K +  L D+  + +             
Sbjct: 194 ---FKRHGAETIDTPVFELKDVL--TGKYGEDSKLIYDLKDQGGEILALRYDLTVPFARY 248

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +  S           +       + R+      +F +   Y   L          + 
Sbjct: 249 LAMNKISSIKRYHIAKVYRRDNPATTKGRYREFYQCDFDIAGQYDPMLPDVECIKVVCEA 308

Query: 178 FV-----SYLRIFHRLGLKSIPMRAESGPI-GGDLSHEFIVLADTGETQVFCSKDFMDFP 231
                  SYL   +   L      A S P          +   D    +    +   +  
Sbjct: 309 LEALNLGSYLIKVNHRSLLDGIFAACSVPQSKFRSICSAVDKLDKSPWEEVKKEMIDEKG 368

Query: 232 IPSENTD-----------FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSAR 280
           +     D            + I  L    E      A       E L       K +   
Sbjct: 369 LDDHIADKVGKYVLQSGGVELIAELRKDKELMKQTVAVQGLDSIELLLKYCGIYKILDKI 428

Query: 281 GIE----VGHIFYFGTKY------------SLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             +     G  +Y G  Y            S+     +    G           +G    
Sbjct: 429 KFDLSLARGLDYYTGVIYEAILCGDNIGVGSVAGGGRYDNLVGMFDSKNKMVPCVGVSLG 488

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF-WDD 383
           V  +              + A      +     +    +   KI A L + G        
Sbjct: 489 VERIFSVMEAKLANKGLKTRAAEIEVFVASAQKN--LHEERMKILADLWEAGVKAEQSYK 546

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
              ++ +Q    +  G PL +IVG   ++  +V ++   T  +  +    +I     +  
Sbjct: 547 KNAKLLAQLQHCEENGIPLAIIVGEGELAQGEVTLRVVSTREQTRVPRSNLIEEIRRQLK 606

Query: 444 NN 445
            +
Sbjct: 607 TS 608


>gi|226944892|ref|YP_002799965.1| seryl-tRNA synthetase [Azotobacter vinelandii DJ]
 gi|259511660|sp|C1DKY8|SYS_AZOVD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|226719819|gb|ACO78990.1| seryl-tRNA synthetase [Azotobacter vinelandii DJ]
          Length = 426

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 70/204 (34%), Gaps = 10/204 (4%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E   P L  A     +G+   + +++ +++   +    
Sbjct: 170 ARLHRALAQFMLDLHTGEHGYEEAYTPYLVQAPALQGTGQLPKFEEDLFKISREGEADFY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAY 161
             PT E  +T+I    I   R LP  F      FR E         G++R  +F   +  
Sbjct: 230 LIPTAEVSLTNIVAGEILDARQLPLKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + P  S  +  ++  +  ++  RL L    +   +G +G   +     E  V +   
Sbjct: 290 -RIVDPAKSYEALEELTANAEKVLQRLELPYRVLALCTGDMGFSATKTYDLEVWVPSQDK 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF        + +
Sbjct: 349 YREISSCSNCGDFQARRMQARWRN 372


>gi|220919077|ref|YP_002494381.1| seryl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254783000|sp|B8J8M9|SYS_ANAD2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|219956931|gb|ACL67315.1| seryl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 435

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 80/254 (31%), Gaps = 19/254 (7%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
            +    + +   +     G  E+  P L + +    +G+   + +++ +    N+  M  
Sbjct: 173 ARLERAIVSFFIDVHTSRGYTEILPPYLVTGETMTGTGQLPKFEEDLFKTT--NEPPMYL 230

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYS 162
            PT E  +T++ R  I     +P ++      FR E     R   G+MR  +F   +   
Sbjct: 231 IPTAEVPVTNMHRDEIFEANAMPVSYCAFSPCFRAEAGSAGRDTRGIMRQHQFHKVELVK 290

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTGE 218
                E       KM      +  RLGL        +G +G         E         
Sbjct: 291 LSKAEESDAEH-EKMLDDACEVLRRLGLHHRVSLLCTGDMGFSSAKTYDIEVWCPGQGAY 349

Query: 219 TQVFCSKDFMDFPIPSENTDF---DDIISLNSIVEQWTAPYAATSDVHNEKLFDS----- 270
            ++    +  DF        +   +    L   +         T     E+  ++     
Sbjct: 350 REISSVSNCEDFQARRIRVRYRGENGKPRLAHTLNGSGVAVGRTIVAILEQCQEADGTVV 409

Query: 271 LPENKRVSARGIEV 284
           +PE  R    G+E 
Sbjct: 410 IPEPLRPYMGGLER 423


>gi|315574025|gb|EFU86216.1| seryl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315581976|gb|EFU94167.1| seryl-tRNA synthetase [Enterococcus faecalis TX0309A]
          Length = 423

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 76/214 (35%), Gaps = 13/214 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++    +  
Sbjct: 169 LGARLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAIFGTGQFPKFKEDVFQV---AESD 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F       +        +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFSDAEHSYEELEKMT-NNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
               ++    +  DF        + D        
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGHVQYA 378


>gi|148555446|ref|YP_001263028.1| histidyl-tRNA synthetase [Sphingomonas wittichii RW1]
 gi|148500636|gb|ABQ68890.1| histidyl-tRNA synthetase [Sphingomonas wittichii RW1]
          Length = 415

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/390 (15%), Positives = 115/390 (29%), Gaps = 27/390 (6%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G   + VP  +   ++  S     D   KEM    DR   ++   P     +   + + 
Sbjct: 38  YGFGRVEVPVFEPTAVFARSLGETTDVVSKEMYSFEDRGGDSVTLRPEFTAGIARAYLTE 97

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
               ++ P         FR E   +    R R+F   DA         +      M    
Sbjct: 98  G-WQQHAPLKVATHGPLFRYERPQKG---RYRQFHQLDAEVIGAAEPQADVELLCMADQL 153

Query: 182 LR----------IFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFP 231
           LR            + LG         +  +     H   +  D+ +         +D  
Sbjct: 154 LRELGVADGVTLTLNTLGDGETREAWRAALVAHFEKHRGELSEDSLDRLAKNPLRILDSK 213

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFY 289
            P +    D    ++  +      + A      +    +   N R+  RG++      F 
Sbjct: 214 DPRDRPVADAAPEIDDYLSAEAGAFFAAVTSGLDAAGVAWTRNARL-VRGLDYYRHTAFE 272

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           F T   L    T  G    D  ++            AA IE       +    +    ++
Sbjct: 273 FVTDR-LGAQGTVLGGGRYDGLIETLGGPATPAVGWAAGIERLAMLIDL---PAPERIEV 328

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
           +++ +    Q          A L + G        G  +  +   AD  G    VI+G  
Sbjct: 329 AVVPMGEGAQAFAARAL---ADLRRAGIAADMAYKG-NMKRRMQKADASGARYAVIIGDD 384

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            V+  +V +K      +  ++++ ++    
Sbjct: 385 EVARGEVSLKDMAGQTQAPVAIDGLVAAIR 414


>gi|18312709|ref|NP_559376.1| histidyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
 gi|32130132|sp|Q8ZWZ1|SYH_PYRAE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|18160186|gb|AAL63558.1| histidyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
          Length = 419

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/424 (13%), Positives = 133/424 (31%), Gaps = 29/424 (6%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSY 89
            + +  +G+  WLP    AL ++  ++ +     G   +  P ++  + L  ++G+    
Sbjct: 7   HLRRPVRGMRDWLPPQYYALRHMEEVLCKVAESFGYRRVETPVVEHFEVLAKKAGQ--DV 64

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGV 149
             E+    D+  + +         +  +   +++  R + + ++    ++     P+ G 
Sbjct: 65  INEIYYFKDKAGRDLGLRFDMTVPVARVLSYNLELPRPVRWYYFTKVFRY---DEPQHGR 121

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMF----------VSYLRIFHRLGLKSIPMRAES 199
            R  EF          +   +     ++             Y+RI  R  +  +      
Sbjct: 122 YR--EFYQFGVELVGSSSPRADAEVIQLLIASLEAAGASNFYVRINDRRAVDKLLEHLGV 179

Query: 200 GPIGGDLSH--EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE---QWTA 254
            P    +    +  +     +     +   +   I  E  +    I++   VE   +   
Sbjct: 180 APYRDIIYKALDKKLKLPREDVIKIMTGGGVSKEIAEEIYNTATEITIQEAVELLYKLDK 239

Query: 255 PYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQM 314
              A+ +   + L  S+P  +      I  G  +Y G  +       +K A G       
Sbjct: 240 ALGASYEKIVKYLEASVPMERLKFDMSIVRGLDYYTGIVF-EAFVGEYKLAVGGGGRYDD 298

Query: 315 GSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
                  ++  A       +             +     I   D         +  +L  
Sbjct: 299 LLELYSGVKTPALGFAIGVERLMEAVGI-QNVERPLDYYIYIFDDDAYKYAAAVAKKLRT 357

Query: 375 VGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLE 432
            G  V  +  GE+ G +  F  A  +G    +I+G K +    ++++     I  +  L 
Sbjct: 358 EGYSVVVEL-GEK-GLKDAFEYALKVGARHIIIIGRKELEKGVIKVRDLEKRIEVEKPLS 415

Query: 433 EVIN 436
           + + 
Sbjct: 416 QFLA 419


>gi|325295343|ref|YP_004281857.1| Seryl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065791|gb|ADY73798.1| Seryl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 428

 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 70/220 (31%), Gaps = 13/220 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G K    +   + +      G  E+  P L +      +G+   + +++ ++ 
Sbjct: 166 FVIYKKWGAKLERALINFMLDLHTSNHGYEEIIPPFLVNTKTMTGTGQLPKFEEDLYKIE 225

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSR 153
              ++ +   PT E  +T+I    I   + LP  +      FR E         G+MR  
Sbjct: 226 ---NEDLWLIPTAEVPLTNIHAGEILPEKELPKYYTAYTPCFRREAGAHGRDVRGIMRLH 282

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +           +     +     ++   LGL    +   +G +G   +     E
Sbjct: 283 QFNKVELVKIVHPETSYEELEKLVRE-AEKVLQLLGLHYRVVELCTGDLGFSAAKTYDIE 341

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             + +     ++    +  DF        F D       V
Sbjct: 342 VWIPSQNKYREISSCSNCEDFQARRAKIRFRDKNGKTRFV 381


>gi|229823127|ref|ZP_04449196.1| hypothetical protein GCWU000282_00424 [Catonella morbi ATCC 51271]
 gi|229787293|gb|EEP23407.1| hypothetical protein GCWU000282_00424 [Catonella morbi ATCC 51271]
          Length = 426

 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 74/224 (33%), Gaps = 12/224 (5%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEM 93
                  +  LG +    +   + +   +  G  E+  P + +      +G+Y  + ++ 
Sbjct: 159 SGSRFVFYKGLGARLERAIYNFMLDTHTQHNGYQEIIPPYMVNDQSMFGTGQYPKFVEDT 218

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            R+ D     +   PT E  +T+ + + I    NLP  F  +   FR E     R   G+
Sbjct: 219 FRVNDERG--LTLIPTAEVPLTNYYANEILPLENLPIKFTALSPSFRSEAGSAGRDTRGL 276

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +   +       +     M  +   I   LGL    +   +G +G   +  
Sbjct: 277 IRLHQFNKVEMVKYAHPDHSFEEL-ESMTQNAEGILQALGLPYRVITLCTGDMGFSATKT 335

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              E  +       ++    +  DF        F +       V
Sbjct: 336 YDLEVWIPGQDTYREISSCSNCGDFQARRAKIRFRNAEDKVEYV 379


>gi|308234212|ref|ZP_07664949.1| seryl-tRNA synthetase [Atopobium vaginae DSM 15829]
          Length = 396

 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 70/211 (33%), Gaps = 13/211 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
            Y     G +    +     +  N  G  E   P L + D    +G+   + +++  ++ 
Sbjct: 153 FYVLGGYGAQMERALINFFIDMHNEAGFKEWWPPVLTNYDSLFGTGQLPKFDEDLFHVS- 211

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                +   PT E ++T++ R  +     LP  +      FR+E     R   G++R  E
Sbjct: 212 ---NDLYLIPTAEVMLTNLHRDEVLDASQLPLKYTAFTPCFREEAGSAGRDTRGIIRVHE 268

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F    +        M     +    LGL    +   +G IG         E 
Sbjct: 269 FDKVEMVKFAKPEDSMNQL-ESMVAEAEKCLQVLGLAYRVVSLCTGDIGFSACKCYDLEV 327

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            + +     ++    +  DF     N  + D
Sbjct: 328 WLPSYNNYKEISSCSNCWDFQARRANIKYRD 358


>gi|322436988|ref|YP_004219200.1| histidyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
 gi|321164715|gb|ADW70420.1| histidyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
          Length = 432

 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 128/427 (29%), Gaps = 33/427 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKE 92
           G    LP   +  + V  + R+   R G  E+  P  ++ +L+      E+   D   KE
Sbjct: 9   GTRDLLPPETELWNRVEGVARKVFERYGFGEIRTPLFETTELFVRGVGEET---DVVSKE 65

Query: 93  MLRLADRND------KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
           M    DR        +++   P +   +   +  H           + I  +FR E   R
Sbjct: 66  MYTWEDRARAASEKAQSLTLRPENTAGVVRAYIEHKMDAAGGLRKLFYIGPQFRRERPQR 125

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSY--NKMFVSYLRIFHRLGLKSIPMRAESGPIGG 204
               R R+F    A        G++ +    ++      +   LG+K   +   S     
Sbjct: 126 G---RYRQFWQIGAEVLGPVSSGAESAVRDAEVLEMLASLLDELGVKGWRLEVNSVGSST 182

Query: 205 DLSHEFIVLADTGE-----TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           D       L    E           +     P+   ++   +   + + + +        
Sbjct: 183 DRPRYVAALRAALEPVKDQMCEDNRRRAETNPLRVLDSKAPEDQEIINGLPKIADYLDEA 242

Query: 260 SDVHNEKLFDSLPENKRVSA------RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQ 313
           S  H  ++  +L              RG++      F            + A        
Sbjct: 243 SKEHFAQVLKALDACGVAYHVNPRLVRGLDYYTRTTFEFTVPDGSGLGTQNALLGGGRYD 302

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPD--SVAPFKISLINIKAHDQVCRDACEKIYAR 371
             S  +G  +          D   +I  +  +          I         A   +   
Sbjct: 303 GLSEMLGGPKAPGIGFAIGEDRLILILQEQAAEQAESKMDAYIAPVGVEQNAAALALARE 362

Query: 372 LSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           L + G  V   D   ++   F  AD +     VI+G   V+   +++K   TG + D+S 
Sbjct: 363 LRRDGLRVEVGDGSFRLKKSFEAADKV-AKAVVILGEDEVASGNLKVKRFATGEQRDVSR 421

Query: 432 EEVINYA 438
            E+  Y 
Sbjct: 422 TELGAYL 428


>gi|156741477|ref|YP_001431606.1| seryl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
 gi|189083582|sp|A7NJB8|SYS_ROSCS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|156232805|gb|ABU57588.1| seryl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
          Length = 424

 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 64/236 (27%), Gaps = 14/236 (5%)

Query: 14  NPRDAEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
            P+        L +      +       Y    LG +    +   + +   + G  E+  
Sbjct: 135 APKPHWELGEALDIIDFERGVKLSGSRFYVLKGLGARLQRALIQWMLDLHIQQGYHEVYT 194

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P +        + +   +   + R     +  +   PT E  +T++ R  I     LP  
Sbjct: 195 PFVVKEQCMWGARQLPKFRDNLYRD---VEDDLWLVPTAEVPVTNLHRDEILEADQLPLR 251

Query: 132 FYQIQLKFRDELRPR----FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHR 187
           +      FR E         G+ R  +F   + Y F            K+          
Sbjct: 252 YCAYTPCFRREKMSAGRDVRGIKRGHQFDKVEMYMFVHPDTSYDEL-EKLRADAEATCRL 310

Query: 188 LGLKSIPMRAESGPI----GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           LGL        +G +          E          +V    +   F   + N  +
Sbjct: 311 LGLTFRTKELCTGDLGFAATRTYDIEVWAPGQGEWLEVSSCSNVEAFQARAANIRY 366


>gi|313680047|ref|YP_004057786.1| seryl-tRNA synthetase [Oceanithermus profundus DSM 14977]
 gi|313152762|gb|ADR36613.1| seryl-tRNA synthetase [Oceanithermus profundus DSM 14977]
          Length = 417

 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 66/223 (29%), Gaps = 13/223 (5%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
              G   +L  G + +  +     +     G +E+  P L        +G+       M 
Sbjct: 161 SGSGFPFFLGRGARLVRALENFFLDFHTARGFVEVRPPLLVREPAAFGTGQIPDKEGMMY 220

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            ++          PT E  +T++    I     LP  +      FR E     +   G+ 
Sbjct: 221 EVSGG----YYLIPTSEVPVTNLHAGEILEADRLPLKYTAYTPNFRVEAGSYGKDVRGLN 276

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDL 206
           R  +F   +   F   P+ S     ++      +  RLGL    +   +  +        
Sbjct: 277 RLHQFDKVEMVVFSH-PDESYDWLERLTRQAEELLERLGLPYRRLLMCTADMGFTQAKKY 335

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             E          +V    +  D+      T F +      +V
Sbjct: 336 DLEVWSAGQQKWLEVSSISNMEDYQARRMKTRFREPGGKPRLV 378


>gi|297295257|ref|XP_002808484.1| PREDICTED: LOW QUALITY PROTEIN: probable histidyl-tRNA synthetase,
           mitochondrial-like [Macaca mulatta]
          Length = 506

 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/451 (11%), Positives = 115/451 (25%), Gaps = 53/451 (11%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           P G +          + +  ++     R GA  M  P  +  +   E   Y      M  
Sbjct: 60  PKGTRDLSPQHMVVREKILDLVISCFKRHGAKGMDTPAFELKETLTEK--YGEDSGLMYD 117

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
           L D+  + +                               + +    ++ R+      +F
Sbjct: 118 LKDQGGELLSLRYDLTVPFARYLAMSKVKKMKRYHVGKVWRRESPSIVQGRYREFCQCDF 177

Query: 156 LMKDAYSFDLTPEGSKHSYN---------------KMFVSYLRIFHRLGLKSIPMRAESG 200
            +   +   +                                 +F   G+     RA   
Sbjct: 178 DIAGQFDPMIPDAECLKIMCEILSGLQLGDFLIKVNDRRIVDGMFAACGVPESKFRAICS 237

Query: 201 PI-------GGDLSHEFIVL-------ADTGETQVFCS-------KDFMDFPIPSENTDF 239
            I         D+ HE +         AD     V C        + F D  +       
Sbjct: 238 SIDKLDKMAWKDVRHEMVAKKGLAPEVADRIGDYVQCHGGVSLVEQMFQDPRLSQNKQAL 297

Query: 240 DDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY----S 295
           + +  L  + E       A     +  L   L     V    + +      G +     S
Sbjct: 298 EGLEDLKLLFEYLNLFGIAEKISFDLSLARGLDYYTGVIYEAVLLQTPTQXGEEPLNVGS 357

Query: 296 LPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK 355
           +     + G  G     +        + +    I    + +     + V   +  +    
Sbjct: 358 VAAGGRYDGLVG-MFDPKGHKVPCVGLSIGVERIFYIVEQRMKTKGEKVRTTETQVFVAT 416

Query: 356 AHDQVCRDACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDS 414
                 ++   K+   L   G           ++ +Q    +  G PL VI+G + + + 
Sbjct: 417 PQKNFLQER-LKLITELWDAGIKAEMLYKNNPKLLTQLHYCESTGIPLVVIIGEQELKEG 475

Query: 415 KVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            ++I+   +     +  E ++     R S +
Sbjct: 476 IIKIRSVASREEVAIKRENLVAEIQKRLSES 506


>gi|4103154|gb|AAD10242.1| histidyl-tRNA synthetase [Triticum aestivum]
          Length = 432

 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 1/81 (1%)

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G    +     ++ +    A   G P  V+VG   + D KV++K    
Sbjct: 352 LAAELVNELWSAGIKAEFKLTT-RVQNHIKYATQTGIPWMVLVGESELRDGKVKLKDIRA 410

Query: 424 GIREDMSLEEVINYASHRFSN 444
              E++  ++ +     R SN
Sbjct: 411 NQEEEVPRKDFVEVLKQRLSN 431


>gi|282850025|ref|ZP_06259407.1| serine--tRNA ligase [Veillonella parvula ATCC 17745]
 gi|282580214|gb|EFB85615.1| serine--tRNA ligase [Veillonella parvula ATCC 17745]
          Length = 426

 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 66/204 (32%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +   ++ G  EM  P + + +    +G+   + ++M  +       
Sbjct: 168 LGARLERALINFMVDLHVDKHGYTEMMTPYMVTRETLTGTGQLPKFAEDMYHVE---GTE 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+     I S   LP  +      FR E     R   G++R  +F   +
Sbjct: 225 YFLIPTAEVTLTNYHGGEILSEEELPKYYTAFTACFRAEAGSAGRDTRGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLAD 215
                   +  K     +  +   +   L L    +   +G +          E  + A 
Sbjct: 285 MVKLAKPEDSFKEL-ETLTDNAEEVLRLLELPFRVITLCTGDMGFGSAKTYDVEVWMPAQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     N  F
Sbjct: 344 GKYREISSCSNMTDFQARRANIKF 367


>gi|269797577|ref|YP_003311477.1| seryl-tRNA synthetase [Veillonella parvula DSM 2008]
 gi|269094206|gb|ACZ24197.1| seryl-tRNA synthetase [Veillonella parvula DSM 2008]
          Length = 426

 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 66/204 (32%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +   ++ G  EM  P + + +    +G+   + ++M  +       
Sbjct: 168 LGARLERALINFMVDLHVDKHGYTEMMTPYMVTRETLTGTGQLPKFAEDMYHVE---GTE 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+     I S   LP  +      FR E     R   G++R  +F   +
Sbjct: 225 YFLIPTAEVTLTNYHGGEILSEEELPKYYTAFTACFRAEAGSAGRDTRGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLAD 215
                   +  K     +  +   +   L L    +   +G +          E  + A 
Sbjct: 285 MVKLAKPEDSFKEL-ETLTDNAEEVLRLLELPFRVITLCTGDMGFGSAKTYDVEVWMPAQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     N  F
Sbjct: 344 GKYREISSCSNMTDFQARRANIKF 367


>gi|295839926|ref|ZP_06826859.1| histidine-tRNA ligase [Streptomyces sp. SPB74]
 gi|197696756|gb|EDY43689.1| histidine-tRNA ligase [Streptomyces sp. SPB74]
          Length = 420

 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/425 (14%), Positives = 114/425 (26%), Gaps = 34/425 (8%)

Query: 38  GIYSWLPL--G--QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           G Y  LP   G      + + A +R+     G   +  P  +   L+        D   K
Sbjct: 9   GTYDLLPPDSGRFLAVREAIAAPLRD----AGYGYIETPGFEDVRLFARGVGESTDIVSK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVM 150
           EM     +    +   P     +             NLP   +    ++R E   +    
Sbjct: 65  EMYVFTTKGGDELALRPEGTAAVLRAVLESNLHKTGNLPVKVWYSGSQYRYERPQKG--- 121

Query: 151 RSREFLMKDAY-SFDLTPEGSKHSYNKMFVSY--LRIFHRLGLKSIPMRAESGPIGGDLS 207
           R R F    A       P            +Y  L +     L +    A   P      
Sbjct: 122 RYRHFSQVGAEAIGAEDPLLDAELIILADQAYRSLGLTGHRILLNSLGDATCRPAYRAAL 181

Query: 208 HEFIVLADTGET-----QVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
            +F+   D  E      ++   +   D     +       +  + + E   A +     +
Sbjct: 182 QDFLRALDLDEETRRRVEINPLRVLDDKRPEVQERLTGAPLLADHLCEDCKAYHEEVRTL 241

Query: 263 HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAM 322
            +        + K V          F F        SA   G  G+   +     G    
Sbjct: 242 LDGAGVAYEDDPKLVRGLDYYTRTTFEFVHDGLGSQSA--VGGGGRYDGLSEMLGGPALP 299

Query: 323 RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD 382
            V  A+               +    ++ +      +  R A  +    L + G      
Sbjct: 300 SVGWALGVDRTVLALEAEGVVLDLPPVTSVYAVPLGEAARRALFEKVTELRRAGIATDL- 358

Query: 383 DMGEQIGSQ-----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
                 G +        A+  G  L +I G + + D  V+IK   +G +  + L + +  
Sbjct: 359 ----SFGGRGLKGAMKSANRSGARLALIAGERDLVDGSVQIKDLESGEQHAVPLAQAVAE 414

Query: 438 ASHRF 442
                
Sbjct: 415 IQRLL 419


>gi|332687374|ref|YP_004457147.1| seryl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
 gi|332687375|ref|YP_004457148.1| seryl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
 gi|332371383|dbj|BAK22338.1| seryl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
 gi|332371384|dbj|BAK22339.1| seryl-tRNA synthetase [Melissococcus plutonius ATCC 35311]
          Length = 423

 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 72/195 (36%), Gaps = 13/195 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +   N  G  EM  P + ++     +G++  + +++ ++AD     
Sbjct: 169 LGARLERAIYNFMLDTHINEHGFQEMITPYMVNSKSMFGTGQFPKFKEDVFQVAD---TD 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+ + + I S   LP  F  +   FR E     +   G++R  +F   +
Sbjct: 226 YTLIPTAEVPLTNYYANEILSEDELPIYFTAMSPCFRSEAGSAGKDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F           +        I  +L L    +   +G +G   +     E  + A 
Sbjct: 286 MVKFTTEETSYDELESLTRAG-EEILEKLELPYRTIVLCTGDMGFSAAKTYDIEVWMPAQ 344

Query: 216 TGETQVFCSKDFMDF 230
               ++    + +DF
Sbjct: 345 NTYREISSCSNCVDF 359


>gi|260584327|ref|ZP_05852074.1| serine--tRNA ligase [Granulicatella elegans ATCC 700633]
 gi|260157845|gb|EEW92914.1| serine--tRNA ligase [Granulicatella elegans ATCC 700633]
          Length = 426

 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 73/204 (35%), Gaps = 12/204 (5%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +    + G  EM  P L +      +G++  + +++ ++ D  +  
Sbjct: 169 LGARLERAIYNYMIDLHVEKHGYTEMITPYLVNEQSMYGTGQFPKFKEDVFQINDERN-- 226

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I     LP  F  +   FR E     R   G++R  +F   +
Sbjct: 227 LTLIPTAEVPLTNYYANEILEEAQLPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFNKVE 286

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F       +        +   +   LGL    +   +G +G   S     E  + A 
Sbjct: 287 MVKFATPETSFEELEKMT-DNAEDVLRGLGLPFRTIVLCTGDMGFSASKTYDVEVWIPAQ 345

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    + +DF        +
Sbjct: 346 DTYREISSCSNCVDFQARRAKIRY 369


>gi|257060727|ref|YP_003138615.1| seryl-tRNA synthetase [Cyanothece sp. PCC 8802]
 gi|256590893|gb|ACV01780.1| seryl-tRNA synthetase [Cyanothece sp. PCC 8802]
          Length = 427

 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 68/207 (32%), Gaps = 12/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + + Q   G +E+  P L ++D    +G+   + +E  + +   +  + 
Sbjct: 176 GAALERALINFMLDCQINAGYLEVIPPVLINSDSLQGTGQLPKFAEESFKCS---EDDLW 232

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I     LP         FR E     +   G++R  +F   +  
Sbjct: 233 LAPTAEVPVTNLYRDEIVEAEQLPIKHCAYTPCFRREAGSYGKDTRGLIRLHQFNKVELV 292

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                          +  +   I   L L    +   +G +G   +     E  + +   
Sbjct: 293 KLVHPETSEAEH-QSLVNNAEAILQALKLPYRVLELCTGDLGFGATKCYDLEVWLPSSGT 351

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF     N    +   
Sbjct: 352 YREISSCSNCGDFQARRANIRLKEKGK 378


>gi|218247950|ref|YP_002373321.1| seryl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|226701390|sp|B7JY63|SYS_CYAP8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|218168428|gb|ACK67165.1| seryl-tRNA synthetase [Cyanothece sp. PCC 8801]
          Length = 427

 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 68/207 (32%), Gaps = 12/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + + Q   G +E+  P L ++D    +G+   + +E  + +   +  + 
Sbjct: 176 GAALERALINFMLDCQINAGYLEVIPPVLINSDSLQGTGQLPKFAEESFKCS---EDDLW 232

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I     LP         FR E     +   G++R  +F   +  
Sbjct: 233 LAPTAEVPVTNLYRDEIVEAEQLPIKHCAYTPCFRREAGSYGKDTRGLIRLHQFNKVELV 292

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                          +  +   I   L L    +   +G +G   +     E  + +   
Sbjct: 293 KLVHPETSEAEH-QSLVNNAEAILQALKLPYRVLELCTGDLGFGATKCYDLEVWLPSSGT 351

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF     N    +   
Sbjct: 352 YREISSCSNCGDFQARRANIRLKEKGK 378


>gi|310778421|ref|YP_003966754.1| seryl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
 gi|309747744|gb|ADO82406.1| seryl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
          Length = 423

 Score = 64.4 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 10/175 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +      G  E   P L   D+   +G+   +  +M +  D 
Sbjct: 164 VYRGLGARLERALINFMLDLHTTEHGYTEHITPFLVRRDICEGTGQLPKFEDDMYKTTD- 222

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
               M    T E  +T++ R  I    +LP  +      FR E     R   G++R  +F
Sbjct: 223 ---EMFLISTSEITLTNLHRKEILEESDLPKYYTAHSPCFRREAGSYGRDVKGLIRQHQF 279

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              +                 +      +  +LGL    ++  SG IG   +  +
Sbjct: 280 NKVEMVKITTPENSYDELDKMVVN-AETVLQKLGLPYRLVQLCSGDIGFSAAKTY 333


>gi|300087729|ref|YP_003758251.1| seryl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527462|gb|ADJ25930.1| seryl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 413

 Score = 64.4 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 73/237 (30%), Gaps = 15/237 (6%)

Query: 14  NPRDAEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMS 70
            P+       +L +      +       Y     G +   ++ ++  +   R  G  EM 
Sbjct: 125 TPKSHWELGEQLDIIDFERGVKISGSRFYVLKNAGARLQRSLISLFLDIHTRQHGYSEMY 184

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
           +P +   +    SG    +   + R     +  +   PT E  +T++ R  I +   LP 
Sbjct: 185 LPFMVKQESLFGSGNLPKFADNLYRD---ANDDLWMVPTAEVPLTNLHRDEILASSELPK 241

Query: 131 TFYQIQLKFRDELR----PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
            +      FR E         G+ R  +F   + Y F      ++    K+      I  
Sbjct: 242 HYCAYTACFRREKMSAGKDTRGIKRGHQFDKVELYKFTTPESSNQEL-EKLLNDAEAIAK 300

Query: 187 RLGLKSIPMRAESGPI----GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            L L    +   +G I          E          +V    + +DF     N  +
Sbjct: 301 ALELPYRIVELCTGDIGFASSKSYDIEIWAPGVGEWLEVSSCSNCLDFQARRANIRY 357


>gi|86160271|ref|YP_467056.1| seryl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123496947|sp|Q2IGB1|SYS_ANADE RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|85776782|gb|ABC83619.1| seryl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 435

 Score = 64.4 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 80/254 (31%), Gaps = 19/254 (7%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
            +    + +   +     G  E+  P L + +    +G+   + +++ +    N+  M  
Sbjct: 173 ARLERAIVSFFIDVHTSRGYTEILPPYLVTGETMTGTGQLPKFEEDLFKTT--NEPPMYL 230

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYS 162
            PT E  +T++ R  I     +P ++      FR E     R   G+MR  +F   +   
Sbjct: 231 IPTAEVPVTNMHRDEIFEASAMPVSYCAFSPCFRAEAGSAGRDTRGIMRQHQFHKVELVK 290

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTGE 218
                E       KM      +  RLGL        +G +G         E         
Sbjct: 291 LSKAEESYAEH-EKMLDDACEVLRRLGLHHRVSLLCTGDMGFSSAKTYDIEVWCPGQGAY 349

Query: 219 TQVFCSKDFMDFPIPSENTDF---DDIISLNSIVEQWTAPYAATSDVHNEKLFDS----- 270
            ++    +  DF        +   +    L   +         T     E+  ++     
Sbjct: 350 REISSVSNCEDFQARRIRVRYRGENGKPRLAHTLNGSGVAVGRTIVAILEQCQEADGTVV 409

Query: 271 LPENKRVSARGIEV 284
           +PE  R    G+E 
Sbjct: 410 IPEPLRPYMGGLER 423


>gi|294793380|ref|ZP_06758525.1| serine--tRNA ligase [Veillonella sp. 6_1_27]
 gi|294455811|gb|EFG24176.1| serine--tRNA ligase [Veillonella sp. 6_1_27]
          Length = 426

 Score = 64.4 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 66/204 (32%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +   ++ G  EM  P + + +    +G+   + ++M  +       
Sbjct: 168 LGARLERALINFMVDLHVDKHGYTEMMTPYMVTRETLTGTGQLPKFAEDMYHVE---GTE 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+     I S   LP  +      FR E     R   G++R  +F   +
Sbjct: 225 YFLIPTAEVTLTNYHGGEILSEEELPKYYTAFTACFRAEAGSAGRDTRGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLAD 215
                   +  K     +  +   +   L L    +   +G +          E  + A 
Sbjct: 285 MVKLAKPEDSFKEL-ETLTDNAEEVLRLLELPFRVITLCTGDMGFGSAKTYDVEVWMPAQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     N  F
Sbjct: 344 GKYREISSCSNMTDFQARRANIKF 367


>gi|332827547|gb|EGK00293.1| histidyl-tRNA synthetase [Dysgonomonas gadei ATCC BAA-286]
          Length = 461

 Score = 64.4 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 61/451 (13%), Positives = 127/451 (28%), Gaps = 68/451 (15%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGR-----YDSY 89
           P G +          + +   IRE     G  ++  P +++   L  + G          
Sbjct: 14  PKGTRDFSPEEMAKRNYIFNTIREVFKLYGFRQIETPAMENLSTLLGKYGEEGDKLLFKI 73

Query: 90  GKEMLRLADRNDKAMIYGPTHEEVMTDI--------------FRSHIKSYRNLPFTFYQI 135
                 L D +D+ +     +                     +    ++    PF  YQI
Sbjct: 74  LNSGDYLKDISDEELSERNVNRLATRLSEKGLRYDLTVPFARYVVMHRNEITFPFRRYQI 133

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           Q  +R +   +    R REF   DA         ++    ++      +F+R G++    
Sbjct: 134 QPVWRADRPQKG---RYREFFQCDADIIGSDSLINE---VELIQIIDEVFNRFGIRVCI- 186

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT-- 253
           +  +  I      E I  +D                +   N +          +EQ    
Sbjct: 187 KLNNRKIL-SGIAEIIGESDKITDITVAIDKLDKIGLQKVNEELASKGIPQKAIEQLQPI 245

Query: 254 ----APYAATSDVHNEKLFDS------LPENKRVSARGIEVGHIFYFGTKYSLPMSATFK 303
                      D     L DS      + E   +  R   +G         +L     + 
Sbjct: 246 ILLQGSNGEKLDTLKTVLKDSDTGIKGVDELGFILNRLKIIGIRSELDLDLTLARGLNYY 305

Query: 304 -------------------GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV 344
                              G    +     G  G+  +               +      
Sbjct: 306 TGAIIEVKALDVQMGSITGGGRYDNLTGIFGLPGVSGVGFSFGADRIFDVLNQLDLYPKD 365

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
           +     ++ +   ++        +  ++ +            ++  Q + AD    P   
Sbjct: 366 SIQNTQVLFVNFGEKE-ETYILPLITKMRQANISTEIYPEQSKMKKQMSYADSNKIPYVA 424

Query: 405 IVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
           I+G   +++ K+ +K+ +TG ++ +SLEE I
Sbjct: 425 IIGENEMNEGKITLKNMVTGEQDLLSLEECI 455


>gi|4103152|gb|AAD10241.1| histidyl-tRNA synthetase [Triticum aestivum]
          Length = 479

 Score = 64.4 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 1/81 (1%)

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G    +     ++ +    A   G P  V+VG   + D KV++K    
Sbjct: 399 LAAELVNELWSAGIKAEFKLTT-RVQNHIKYATQTGIPWMVLVGESELRDGKVKLKDIRA 457

Query: 424 GIREDMSLEEVINYASHRFSN 444
              E++  ++ +     R SN
Sbjct: 458 NQEEEVPRKDFVEVLKQRLSN 478


>gi|296533063|ref|ZP_06895707.1| histidine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
 gi|296266607|gb|EFH12588.1| histidine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
          Length = 436

 Score = 64.4 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 56/390 (14%), Positives = 114/390 (29%), Gaps = 26/390 (6%)

Query: 64  TGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSH 121
            G  E + P  ++  ++  +     D   KEM    DR   ++   P     +     S+
Sbjct: 32  YGLEEWATPIFEATGVFARTLGDTSDVVTKEMYSFEDRGGDSVTLRPEGTAGICRALVSN 91

Query: 122 IKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK-HSYNKMFVS 180
             +   LP   +     FR E   +    R R+F    A         +        +  
Sbjct: 92  GLTQGGLPRKVFYAGPMFRYERPQKG---RYRQFHQIGAEILGAAEPLADAEVIACGWQI 148

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLS---------HEFIVLADTGETQVFCSKDFMDFP 231
              +    G+          P               H   + AD+           +D  
Sbjct: 149 LQHLGIDDGVVLEINTLGDAPSRDAYRAALVAYFTAHRDKLSADSQTRLEKNPMRILDSK 208

Query: 232 IPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEV--GHIFY 289
              +     D  ++   +    A +      H ++      +N R   RG++      F 
Sbjct: 209 DAGDKALVADAPTIFEHLTPEAATFFEKVLGHLDRFGVPYRKNPR-IVRGLDYYSHTAFE 267

Query: 290 FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKI 349
           F T   L    T       D  VQ            AA I    +    +  ++    + 
Sbjct: 268 FVTDR-LGAQGTVMAGGRYDGLVQEMGGPATPSVGWAAGI----ERLSELLAETPEATRP 322

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
             +   +  +        +   L   G        G  +  +   A+ +G    VI+G  
Sbjct: 323 VAVIPVSEAEEGPALA--LLQMLRASGVPAEMAYKG-NLKKRMERANRIGAQAAVILGES 379

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            V+++ V +++   G +E + +  +++  +
Sbjct: 380 EVAENVVLVRNLQDGTQERVGIPGLLSALA 409


>gi|282895590|ref|ZP_06303724.1| Histidyl-tRNA synthetase, class IIa [Raphidiopsis brookii D9]
 gi|281199430|gb|EFA74294.1| Histidyl-tRNA synthetase, class IIa [Raphidiopsis brookii D9]
          Length = 477

 Score = 64.4 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%)

Query: 359 QVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEI 418
           +       ++  +L + G +V  +   +Q+G QF +AD  G    VI+GS+  +++K  +
Sbjct: 380 EDLMPIYLQVSQQLRRAGINVVTNFEKKQLGKQFQLADKQGIRFCVIIGSQEAANAKSCL 439

Query: 419 KHRLTGIREDMSLEEVINYASHRFS 443
           K   TG + ++ L  +         
Sbjct: 440 KDLSTGEQIEVPLPNLAPTLQQILQ 464


>gi|167464554|ref|ZP_02329643.1| seryl-tRNA synthetase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 292

 Score = 64.4 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRY 86
           R G +         +  LG +    +   + +   +  G +E+  P L + D    +G+ 
Sbjct: 20  RAGKV--TGSRFVFYKGLGARLERALLNFMMDLHSDEHGYMEILPPYLVNRDSLTGTGQL 77

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP- 145
             + +++ R+   ++      PT E  +T+  R  I +   LP  F      FR E    
Sbjct: 78  PKFAEDVFRI---DNSDYFLIPTAEVPVTNYHRDEILTEEQLPGNFVAFSACFRSEAGAA 134

Query: 146 ---RFGVMRSREFLMKDAYSFDLTPEGSKH 172
                G++R  +F   +        +  K 
Sbjct: 135 GRDTRGLIRQHQFNKVELVKLVKPEDSYKE 164


>gi|330720580|gb|EGG98850.1| Histidyl-tRNA synthetase [gamma proteobacterium IMCC2047]
          Length = 317

 Score = 64.4 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 74/288 (25%), Gaps = 30/288 (10%)

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP--IGGDLSHEFIVLADT 216
                 L    ++  Y    V++L        K    R  S P  I    + +   L D 
Sbjct: 52  TLEINSLGSAEARARYRDDLVTFLEKHIDRLDKDSQRRLSSNPLRILDSKNPDTQALLDE 111

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKR 276
                                  D       +  +        S    E +   L     
Sbjct: 112 APNFKDYLDQESADHFQQLLARLDAAGIAYQVNPRLVRGLDYYSKTVFEWVTAELGAQGT 171

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
           V A G   G +   G K +                     + +G  R++  +        
Sbjct: 172 VCAGGRYDGLVEQLGGKPT-----------------PAVGFAMGVERLILMLQTLQCIPD 214

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSK--VGCDVFWDDMGEQIGSQFAV 394
            +             I + +  +    A  ++   L        V  D  G     Q   
Sbjct: 215 NLSKTA--------DIYVASAGEGASSAALQVAETLRSGFENLRVQVDCTGGGFKGQLKR 266

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIK-HRLTGIREDMSLEEVINYASHR 441
           AD  G    +++G + ++ S+V +K  R    +  +  + ++ +    
Sbjct: 267 ADKSGADYALLIGEQELAQSEVTVKPLRGGAEQARVKSDGLVEHFKKL 314


>gi|303237392|ref|ZP_07323962.1| histidine--tRNA ligase [Prevotella disiens FB035-09AN]
 gi|302482779|gb|EFL45804.1| histidine--tRNA ligase [Prevotella disiens FB035-09AN]
          Length = 454

 Score = 64.4 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 5/127 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      +     L+ I   ++   +      A+  
Sbjct: 329 FGMPGLSGVGISFGADRIYDVLNTLDLYPKSSVTGTQLLFINFGEKE-MNYVLPFVAQAR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           K         D    ++  Q A A+    P  V+ G   +   KV +K   +G +  +S 
Sbjct: 388 KANIRTEIFPD--SVKMKKQMAYANAKNIPFVVLAGDSEIEQGKVTLKDMESGEQTLVSS 445

Query: 432 EEVINYA 438
           EE+I+  
Sbjct: 446 EELISKL 452


>gi|238019657|ref|ZP_04600083.1| hypothetical protein VEIDISOL_01531 [Veillonella dispar ATCC 17748]
 gi|237863698|gb|EEP64988.1| hypothetical protein VEIDISOL_01531 [Veillonella dispar ATCC 17748]
          Length = 426

 Score = 64.4 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 67/204 (32%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +   ++ G  EM  P + + +    +G+   + ++M  + D     
Sbjct: 168 LGARLERALINFMVDLHVDKQGYTEMMTPYMVTRETLTGTGQLPKFAEDMYHVED---TE 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+     I S   LP  +      FR E     R   G++R  +F   +
Sbjct: 225 YFLIPTAEVTLTNYHSGEILSEEELPKYYTAFTACFRAEAGSAGRDTRGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLAD 215
                   +  K     +  +   +   L L    +   +G I          E  + A 
Sbjct: 285 MVKLAKPEDSYKEL-ETLTDNAEEVLRLLELPFRVITLCTGDIGFGSAKTYDVEVWMPAQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     N  F
Sbjct: 344 GKYREISSCSNMTDFQARRANIKF 367


>gi|156397416|ref|XP_001637887.1| predicted protein [Nematostella vectensis]
 gi|156225003|gb|EDO45824.1| predicted protein [Nematostella vectensis]
          Length = 681

 Score = 64.4 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/384 (9%), Positives = 102/384 (26%), Gaps = 28/384 (7%)

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
            ++  E+   +             E  +    +SH +               ++ + RP 
Sbjct: 274 PAFRNEISPRSGLLRVREFMLAEIEHFVDPTDKSHPRFPEVESLKVTLFPSDYQMDGRPA 333

Query: 147 FGVMRSREFLMKDAYSFDLTPEG-------SKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
             +        K   S  +            K   +   + + +              ++
Sbjct: 334 MQITLGDAIQQKMISSTTVAYFLGRIYLFLIKCGVDPSKLRFRQHMSNEMAHYACDCWDA 393

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
                    E +  AD     +    +     + ++    + +      V    A     
Sbjct: 394 ELCTSYGWIECVGCADRACYDLCQHTNATGEKLVAQVDLPEPVKVDVVEVVPDKAILGKA 453

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFY------------FGTKYSLPMSATFK-GAD 306
                +++ + L       A+ +E                     K  +     ++    
Sbjct: 454 FKKQAKEVMEKLTTLDSKGAKQLEDALNEKGEFAMTVDDQQLLIQKAMVKEIKRYQKDVH 513

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQV 360
            +D    +     G  R++ +V+E +   +      +       +  +K      + ++ 
Sbjct: 514 VRDVEPHVIEPSFGIGRIIYSVLEHNFKIREGDEQRTWLSLPPVIAPVKCSVLPLSKNKE 573

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS--KVEI 418
                +++ + L+++      DD    IG ++A  D +  P  + V    V+       +
Sbjct: 574 FSPFVKELSSALTEMDISHKVDDSSGSIGRRYARTDEIAIPFGITVDFDTVNKEPHTATL 633

Query: 419 KHRLTGIREDMSLEEVINYASHRF 442
           + R T  +    +  +        
Sbjct: 634 RERNTTRQIRAEVSLLPQLVRDLV 657



 Score = 42.8 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 2/109 (1%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAI-EMSVPTLQSADLWVESGRYDSYGKEMLR 95
            G+Y + P G     NV  + ++       + E+    L    +   SG  D +   M++
Sbjct: 91  AGLYDYGPAGCAMESNVINLWKKHFILEEHMLEIRAALLTPHPVLKASGHVDRFADVMVK 150

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
                D         E  +  +                 +       ++
Sbjct: 151 DVKTGDC-YRADHLLEGHLEKLMADKKLPEDKRNEYQSVLNKIDNYNMQ 198


>gi|237723396|ref|ZP_04553877.1| histidyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|299149448|ref|ZP_07042505.1| histidine--tRNA ligase [Bacteroides sp. 3_1_23]
 gi|229447918|gb|EEO53709.1| histidyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|298512635|gb|EFI36527.1| histidine--tRNA ligase [Bacteroides sp. 3_1_23]
          Length = 454

 Score = 64.4 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 5/129 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ I   ++        I +++ 
Sbjct: 329 FGMAGVSGVGISFGADRIFDVLNQLELYPKEAVNGTELLFINFGEKEA-AFSMGILSKVR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G       D    ++  Q + A+    P   IVG   +++ K  +K+  TG +  +S 
Sbjct: 388 AAGIRAEIFPD--AAKMKKQMSYANTKNIPFVAIVGENEMNEGKAMLKNMETGEQNLVSA 445

Query: 432 EEVINYASH 440
           EE+I     
Sbjct: 446 EELIATVKK 454


>gi|303235731|ref|ZP_07322338.1| serine--tRNA ligase [Prevotella disiens FB035-09AN]
 gi|302484178|gb|EFL47166.1| serine--tRNA ligase [Prevotella disiens FB035-09AN]
          Length = 429

 Score = 64.4 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 10/221 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   EE  ++G +E+  P L +    + +G+      +M  
Sbjct: 164 GAGFPIYIGKMARFQRALEAFFLEEARKSGYLEVQPPLLVNQASGLGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           +       +   PT E  +T+IFR  I   + LP         FR E     +   G+ R
Sbjct: 224 VQA---DDLYLIPTAEVPVTNIFRDEILDEKELPIKRCAYSSCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHE 209
             +F   +    D TP+ S  S N+M      +  +L L    +R   G +     + ++
Sbjct: 281 LHQFDKVEIVRID-TPQHSYESLNEMLEHVESLLQKLELPYHILRLCGGDMSFTSAICYD 339

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           F V +   +  +  S         +         + +  +E
Sbjct: 340 FEVWSAAQKRWLEVSSVSNFESYQANRLHCRYRKAEDKKIE 380


>gi|116748863|ref|YP_845550.1| seryl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
 gi|166223302|sp|A0LI63|SYS_SYNFM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116697927|gb|ABK17115.1| seryl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
          Length = 423

 Score = 64.0 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 70/208 (33%), Gaps = 13/208 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           +G      + A + +    R G  E+  P + ++   + +G+   + +++ +L DR    
Sbjct: 168 MGAALERALIAFMLDIHTKRHGYTEVLPPFIVNSTSLLGTGQLPKFKEDLFKLEDR---D 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+I  +       LP  +      FR E     +   G++R  +F   +
Sbjct: 225 FYLVPTAEVPVTNIHMNETLEESELPKLYTAFTPCFRSEAGSYGKDTRGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLAD 215
                      +     +     RI   LGL    +   +G +G         E  +   
Sbjct: 285 LVKLVKPESSYEELEKLLLD-AERILQELGLHYRVVTLCTGDMGFSSAKTYDIEVWLPGQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDII 243
               ++    +F DF     N  F    
Sbjct: 344 NTYREISSCSNFEDFQARRANIRFRRKG 371


>gi|256840569|ref|ZP_05546077.1| seryl-tRNA synthetase [Parabacteroides sp. D13]
 gi|256737841|gb|EEU51167.1| seryl-tRNA synthetase [Parabacteroides sp. D13]
          Length = 424

 Score = 64.0 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +  LG +    +     +E    G +E+  PT+ ++     +G+      +M  
Sbjct: 164 GAGFPVYKGLGARLQRALINFFLDEARDAGYLEIMPPTVVNSASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CE---VDDLYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL--SHE 209
             EF   +    D  PE SK S+ +M      +  +L L    +R   G +        +
Sbjct: 281 LHEFSKVELVRIDK-PEHSKQSHQEMLNHVEGLLQKLELPYRILRLCGGDMSFTAALCFD 339

Query: 210 FIVLADTGETQV 221
           F V ++  +  +
Sbjct: 340 FEVYSEAQQRWL 351


>gi|297623998|ref|YP_003705432.1| histidyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
 gi|297165178|gb|ADI14889.1| histidyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
          Length = 427

 Score = 64.0 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 65/431 (15%), Positives = 125/431 (29%), Gaps = 35/431 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRYDS--YGKEML 94
           G +  LP  Q+   +V +         G +E++ P  +  +++ +S G         EM 
Sbjct: 8   GTFDILPEDQRLRRHVLSTAERVLEHAGVLELTPPIFEHTEVFTKSVGASSDLVVQHEMY 67

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
              DR ++++   P     +   +  +       P   +     FR E   R    R R+
Sbjct: 68  TFTDRGERSLTLRPEFTAGVLRAYIENGLIVWPTPVKLWSYGPIFRAENPQRG---RFRQ 124

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF---------------HRLGLKSIPMRAES 199
           F   +     L           +  + L                        +  +R E 
Sbjct: 125 FHQVNCEFLGLDTPLLDAEAIALLYTVLSACGLEGLTVRLGSVGDPEDAAAYNAYLRREL 184

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAAT 259
           G    +LS            +V  SKD  D  + +      D ++ ++           T
Sbjct: 185 GARQSELSETSRERLRLNPMRVLDSKDAGDQAVIATLKRPLDFLNPDARAHFEGVQAFLT 244

Query: 260 SDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
           +     ++ DS+        R     H    G + +L     + G        +    G 
Sbjct: 245 TWGIPFEVDDSIVRGLDYYRRTAFEIHAAGIGAQSALCGGGRYDGLVAALGGPETPGVGW 304

Query: 320 --GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC 377
             G  RV+ A+                       + +   D         +  RL +   
Sbjct: 305 AFGLERVLDAL---------REAGVRAPEAARPALFLVPMDDEAVAEVAALAFRLRQ-NL 354

Query: 378 DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
            V        +G  F  A+  G     + G++        +K   TG + ++   E+  +
Sbjct: 355 TVLHAYAKRNLGKGFKEAERAGARFAGLRGARERERGVYALKDLATGEQLELPEGELAGF 414

Query: 438 ASHRFSNNRPV 448
              R    RP+
Sbjct: 415 LHERLE--RPL 423


>gi|241895222|ref|ZP_04782518.1| seryl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
 gi|241871528|gb|EER75279.1| seryl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
          Length = 427

 Score = 64.0 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 64/171 (37%), Gaps = 7/171 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + +E  + G  EM  P L   +    +G+Y  +  +  R+    +  M 
Sbjct: 170 GARLERAVYNFMLDEHQKEGYKEMITPYLVKDEAMYGTGQYPKFMDDAYRV--GTNDEMT 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+ FR  +     LP++   +   FR E     R   G++R  +F   +  
Sbjct: 228 LIPTAEVPLTNYFREEVIDADKLPYSVTALSPAFRQEAGSAGRDTRGLIRMHQFNKVEMV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIV 212
            F    +  +   +        +  +L L    +   +G +G   +  + V
Sbjct: 288 KFTKPEDSYQALEDMTVN-AENLLKKLNLPYHVITLSTGDMGFSAAKTYDV 337


>gi|322434825|ref|YP_004217037.1| seryl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
 gi|321162552|gb|ADW68257.1| seryl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
          Length = 451

 Score = 64.0 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 66/178 (37%), Gaps = 14/178 (7%)

Query: 46  GQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR----- 99
           G +    +   + +   R  G  E+  P + ++     +G+   + +++    D+     
Sbjct: 174 GARLERALANFMLDLHTRQHGYTEVLPPAMVNSKSLFGTGQLPKFAEDLFHCDDKGPYEP 233

Query: 100 ---NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRS 152
               D      PT E  +T+IFR       +L  +F      +R E     +   G++R 
Sbjct: 234 GNYQDSDHWLIPTAEVPLTNIFRDETLDEADLTISFCAYTSCYRSEAGSHGKDTRGLIRQ 293

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            +F  K        P+ S+  +  +  +   I  +LGL    M   +G +G   +  +
Sbjct: 294 HQF-QKVELVKFTRPQDSEAEHENLTRNAETILEQLGLPYRRMLLCTGDMGFSSAKTY 350


>gi|52840758|ref|YP_094557.1| seryl-tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|67461694|sp|Q5ZY59|SYS_LEGPH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|52627869|gb|AAU26610.1| seryl tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 426

 Score = 64.0 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 8/161 (4%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +    + G  E+ VP + +AD  + +G+   +  ++ +L    D    
Sbjct: 170 ARLHRALIQFMLDIHIQQHGYQEIYVPYIVNADSLLGTGQLPKFEADLFKLT--GDNGYY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+  R  I S   LP  +      FR E     +   G++R  +F   +  
Sbjct: 228 LTSTSEIPVTNTVREMILSAEQLPIRYVCHSPCFRSEAGSYGKDTKGMIRQHQFEKVELV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                 +       ++      I  RL L    +   +G I
Sbjct: 288 WITKPEDSYNAL-EQLTQHAEIILQRLNLPYRVVALCTGDI 327


>gi|42560626|ref|NP_975077.1| seryl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|81829421|sp|Q6MUG5|SYS_MYCMS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|42492122|emb|CAE76719.1| Serine-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301320587|gb|ADK69230.1| serine--tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 422

 Score = 64.0 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 14/245 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K +  +  I+ +   + G  E+  P + +    + +G+   + ++M ++    
Sbjct: 168 IYTGLGSKLVRAIADILLKRHEKHGYKEIFCPLIVNKSAMLGTGQLPKFSEDMYQV---- 223

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
                  PT E  +T++  + I +Y  LP  +      FR E     R   G++R  +F 
Sbjct: 224 -GEQYLIPTSEVPLTNLHANEILTYDMLPLKYTSFTQCFRQEAGSAGRDTKGMIRLHQFN 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +        +        +      + +   L    +   SG IG   +     E   
Sbjct: 283 KVELVKITHPDQSMNEL-ESLVKDAEDVLNMFDLPYRVVELCSGDIGFSSAKTYDLEVWF 341

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                  ++    +  DF   +  T F D      +V        A   +    L +   
Sbjct: 342 PEQNKYREISSCSNCTDFQARNIQTRFKDKDGKIKLVHTLNGSGVAIDRLIATILENYWD 401

Query: 273 ENKRV 277
             K V
Sbjct: 402 GEKLV 406


>gi|149726262|ref|XP_001504203.1| PREDICTED: similar to Histidyl-tRNA synthetase-like [Equus
           caballus]
          Length = 509

 Score = 64.0 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 62/488 (12%), Positives = 134/488 (27%), Gaps = 64/488 (13%)

Query: 11  LQENPRDAEIA----SHKLMLRTG---------MIHQHSKGIYSWLPLGQKALDNVNAII 57
           L++    AE      +  L L+            + +  KG   + P      + V  +I
Sbjct: 21  LKQQKASAEQIEEEVAKLLKLKAQLGPDEGKQKFVLKTPKGTRDYSPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +    +G+Y    K +  L D+  + +             
Sbjct: 81  ISCFKRHGAEVIDTPVFELKETL--TGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL-TPEGSKHSYNK 176
                 +   L         K      P     R REF   D        P        K
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLK 193

Query: 177 MFVSYL---RIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +    L   +I   L   +     +    I G    +F  +  + +     S + +   +
Sbjct: 194 IMCEILSSLQIGDFLVKVNDRRILDGMFAICGVPDSKFRTICSSVDKLDKVSWEEVKNEM 253

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDV-------HNEKLFDSLPENKRVSARGIEVG 285
             E     ++        Q     +    +        N++  + L + K +      +G
Sbjct: 254 VGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPELSQNKQALEGLGDLKLLFEYLTLLG 313

Query: 286 HIFYFGTKYSLPMSATFKG-------------------------ADGKDHYVQMGSYGIG 320
                    SL     +                           A G  +   +G +   
Sbjct: 314 IADKISFDLSLARGLDYYTGVIYEAVLLQSPAQAGEEPLGVGSVAAGGRYDGLVGMFDPK 373

Query: 321 AMRVVAAVIESSHDGKGIIW------PDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             +V    +    +    I        +       + + + +  +   +   K+ + L  
Sbjct: 374 GRKVPCVGLSIGVERIFSIVEQRLEALEEKVRTTETQVLVASAQKKLLEERLKLVSELWD 433

Query: 375 VGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G           ++ +Q    +  G PL  I+G + + D  ++++   +    D+  E+
Sbjct: 434 AGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVASREEVDIRRED 493

Query: 434 VINYASHR 441
           ++     R
Sbjct: 494 LVEEIKRR 501


>gi|299140764|ref|ZP_07033902.1| histidine--tRNA ligase [Prevotella oris C735]
 gi|298577730|gb|EFI49598.1| histidine--tRNA ligase [Prevotella oris C735]
          Length = 454

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 65/455 (14%), Positives = 138/455 (30%), Gaps = 62/455 (13%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQ-------------SADLWVE-- 82
           G   + P      + +   I++     G  ++  P ++                L+    
Sbjct: 10  GTRDFGPEEMAKRNYIFNTIKDVYALYGFQQIETPAMETLQTLMGKYGEEGDKLLFKILN 69

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI------FRSHIKSYRNLPFTFYQIQ 136
           SG Y +   +   L++RN   +      + +  D+      +    +    LPF  YQIQ
Sbjct: 70  SGDYLNKVTD-EELSERNPLHLASKLCEKGLRYDLTVPFARYVVMHREELQLPFKRYQIQ 128

Query: 137 LKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL-------- 188
             +R +   +    R REF   DA         ++    ++  +    F           
Sbjct: 129 PVWRADRPQKG---RYREFYQCDADVVGSDSLLNEVELMQIVDTVFTKFGVRVQIKINNR 185

Query: 189 ----GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS-------ENT 237
               G+  +   A+          +   +          +    D  I         E T
Sbjct: 186 KILTGIAEVIGEADKIVDITVAIDKLDKIGLDNVNAELKADGISDEAIEKLQPIISLEGT 245

Query: 238 DFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIE----------VGHI 287
           + D + ++  ++E          +   + + D+L      +   ++           G I
Sbjct: 246 NEDKLNTIAKVLEGSDVGLKGVEET--KFILDTLKVTGLNNEIQLDLTLARGLNYYTGAI 303

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPF 347
           F      +   S T  G    +     G  G+  + +             +      A  
Sbjct: 304 FEVKALDTPMGSIT-GGGRYDNLTGIFGMPGLSGVGISFGADRIYDVLNALDLYPKEAVN 362

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVI 405
              ++ I   ++     C    A+  K G       D    ++  Q   A+    P  V+
Sbjct: 363 ATQVLFINFGEKET-AYCLPFVAKARKAGIRTEIFPD--KAKMKKQMGYANAKNIPYVVL 419

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            G   +++ K+ +K   TG +  ++++E+I   S 
Sbjct: 420 AGENEINEGKLMLKDMQTGEQTLITIDELIATVSK 454


>gi|218887314|ref|YP_002436635.1| seryl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226701585|sp|B8DQP8|SYS_DESVM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|218758268|gb|ACL09167.1| seryl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 425

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 69/230 (30%), Gaps = 19/230 (8%)

Query: 14  NPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIE 68
            P++       L      R G           +     +    +     +      G +E
Sbjct: 135 APKEHWEIGTALGGLDFERAG--KLAGSRFAVYRTWAARMERALANFFLDTHVTEHGYVE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + +      +G+   + +++ +L           PT E  +T++    +     L
Sbjct: 193 IIPPFMVNRKTMTGTGQLPKFEEDLFKLE---GWDYFLIPTAEVPLTNLHADDVLEEAQL 249

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +  +   FR E     +   G++R  +F   +   F            KM      +
Sbjct: 250 PMGYAAMTPCFRSEAGSYGKDTRGLIRQHQFTKVEMVRFAHPERSFDEL-EKMRGHAEVL 308

Query: 185 FHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTGETQVFCSKDFMDF 230
             RLGL    +   +G +G         E  +       ++    +  DF
Sbjct: 309 LQRLGLPYRVITLCTGDMGFSSAKTYDIEVWLPGQNAYREISSCSNCGDF 358


>gi|313902776|ref|ZP_07836173.1| seryl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
 gi|313466896|gb|EFR62413.1| seryl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
          Length = 424

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 9/163 (5%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG + +  +   + +      G  E+  P L      + +G+   + ++  R+AD     
Sbjct: 169 LGARLVRALIQFMLDLHTREHGYTEVLPPFLVHRQSMIGTGQLPKFEEDAFRVADS---D 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+++R  I     LP         FR E     R   G++R  +F   +
Sbjct: 226 FYLVPTAEVPVTNLYRDEILDAGQLPIYHVAYTPCFRAEAGSAGRDTRGLIRQHQFDKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
              F       +     +      +  RLGL    +   +G +
Sbjct: 286 LVKFVRPEASPEEHEKLVAD-AEAVLQRLGLPYRVVLICTGDM 327


>gi|254994366|ref|ZP_05276556.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL J2-064]
          Length = 277

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 68/251 (27%), Gaps = 19/251 (7%)

Query: 197 AESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPY 256
           A   P   +   E  V       ++   K   D P+        D ++     E+  A +
Sbjct: 34  AHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILDFLN-----EESVAYF 88

Query: 257 AATSDVHNEKLFDSLPENKRVSARGIEVGHIFY-------FGTKYSLPMSATFKGADGKD 309
                  N        ++  V          F        FG K +L     + G   + 
Sbjct: 89  ENVKKYLNALEIPFEIDSTMVRGLDYYNHTTFEIMSVEEGFGAKTTLCGGGRYHGLVREF 148

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                   G G       +     D K             +                 + 
Sbjct: 149 GGPDTPGMGFGIGVERILLALEKADIKIPAKKPLEVYVITAQP-------EAELKAVTLV 201

Query: 370 ARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
            +L + G     D +  +  +Q   A+       +I+G + +     ++K+  TG +E +
Sbjct: 202 NKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQEAV 261

Query: 430 SLEEVINYASH 440
           S   ++    +
Sbjct: 262 SETTILEKLIN 272


>gi|9719727|gb|AAF97829.1|AC034107_12 Contains similarity to threonyl-tRNA synthetase from Arabidopsis
           thaliana gb|Y14329
          Length = 130

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 349 ISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGS 408
                + +  +  R   +K+  ++ + G  V  D     +  +   A +  +   ++VG 
Sbjct: 37  PRQAIVCSVSEDYRSYADKVRDQIHEAGYYVDVDTTDRNVSDKVQEAQVAHYNYILVVGD 96

Query: 409 KFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           +     +V +  R     E MS+E + +    + +N
Sbjct: 97  EEARTGQVTVWLRD----EMMSIETLSDEFKLKTAN 128


>gi|291532482|emb|CBL05595.1| seryl-tRNA synthetase [Megamonas hypermegale ART12/1]
          Length = 402

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 13/213 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +   ++ G  EM  P + + D    +G+   + ++M +L   
Sbjct: 140 FYKGLGARLERALINFMMDLHVDKQGYTEMLAPFIANKDSMTGTGQLPKFSEDMFKLE-- 197

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E   T+  R  I     LP  +      FR E     R   G++R  +F
Sbjct: 198 -GLDYYLVPTGEVPATNYHRDEILDGDKLPEYYSVYTACFRAEAGSAGRDTRGLIRQHQF 256

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFI 211
              +   F            KM  +   +   L +    ++  +G I          E  
Sbjct: 257 NKVEMIKFVKPETSYDEL-EKMVNNAEEVLQLLEIPYHVVKLCTGDIGFTAAMTYDIEVW 315

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
           + +     ++    +  D+     N  F     
Sbjct: 316 LPSYNTYREISSCSNVCDYQARRANIKFRRSAG 348


>gi|325127949|gb|EGC50850.1| histidyl-tRNA synthetase [Neisseria meningitidis N1568]
          Length = 431

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 114/434 (26%), Gaps = 39/434 (8%)

Query: 34  QHSKGIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--G 84
           Q  KG+   LP       L           +       G  ++  P ++   L+V S   
Sbjct: 6   QSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVGRWTRAYGYRQIRTPIVEQTGLFVRSIGE 65

Query: 85  RYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR 144
             D  GKEM   +D ND   +                     N P   + +   FR E  
Sbjct: 66  ETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVEHNLLYNSPQKLWYMGPMFRRERP 125

Query: 145 PRFGVMRSREFLMKDAYSFDLT-PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA---ESG 200
            +    R R+F      +     P+            + ++  R  L          E  
Sbjct: 126 QKG---RYRQFHQVGIEALGFEGPDIDAEIVAMSADLWEKLGIREYLTLEINSLGNREER 182

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
                   E++   +    +    +     P+   +T   D+  + +   +        S
Sbjct: 183 AAHRAALVEYLTRYEDKLDED-SKRRLKTNPLRVLDTKNPDLQEICNAAPRLVDYLGEAS 241

Query: 261 DVHNEKLF-------------DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADG 307
             H  +                 L        + +        G + ++     + G   
Sbjct: 242 QNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIE 301

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEK 367
           +       S G         ++ S +    +     V             D         
Sbjct: 302 ELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNAAPDVYAMHQGERA----DLQVMKYA-- 355

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-R 426
               L   G +V      + + +Q   AD  G    +IV    +++  V +K       +
Sbjct: 356 --QALRTQGFNVMQHSGYQSLKAQMKKADNSGARFALIVAQDELANGTVTLKDMNGAHGQ 413

Query: 427 EDMSLEEVINYASH 440
           + ++ E++ +    
Sbjct: 414 QTVAAEDLTHTLQQ 427


>gi|258593676|emb|CBE70017.1| Seryl-tRNA synthetase (Serine--tRNA ligase) [NC10 bacterium 'Dutch
           sediment']
          Length = 428

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 9/161 (5%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +      G  E+  P L +A+    +G+   +G+E+ +  D     +
Sbjct: 170 GARLERALIGFMLDLHGKEHGYTEILPPLLVNAEAMRGTGQLPKFGEELFKTKDEG---L 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++ R  I     LP ++      FR E     +   G+MR  +F   + 
Sbjct: 227 YMIPTAEVPVTNLHREEILPPGTLPLSYVAYTPCFRREAGSYGKDTRGLMRQHQFNKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP 201
                     +            +  RLGL    +   +  
Sbjct: 287 VKLAEPERSYEALEEMTR-HAETVLQRLGLPYRTVALCTTD 326


>gi|148360873|ref|YP_001252080.1| seryl tRNA synthetase [Legionella pneumophila str. Corby]
 gi|296106062|ref|YP_003617762.1| seryl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
 gi|166222738|sp|A5IH84|SYS_LEGPC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|148282646|gb|ABQ56734.1| seryl tRNA synthetase [Legionella pneumophila str. Corby]
 gi|295647963|gb|ADG23810.1| seryl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
          Length = 426

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 8/161 (4%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +    + G  E+ VP + +AD  + +G+   +  ++ +L    D    
Sbjct: 170 ARLHRALIQFMLDIHIQQHGYQEIYVPYIVNADSLLGTGQLPKFEADLFKLT--GDNGYY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+  R  I S   LP  +      FR E     +   G++R  +F   +  
Sbjct: 228 LTSTSEIPVTNTVREMILSAEQLPIRYVCHSPCFRSEAGSYGKDTKGMIRQHQFEKVELV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                 +       ++      I  RL L    +   +G I
Sbjct: 288 WITKPEDSYNAL-EQLTQHAEVILQRLNLPYRVVALCTGDI 327


>gi|221066035|ref|ZP_03542140.1| histidyl-tRNA synthetase [Comamonas testosteroni KF-1]
 gi|220711058|gb|EED66426.1| histidyl-tRNA synthetase [Comamonas testosteroni KF-1]
          Length = 434

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 55/412 (13%), Positives = 101/412 (24%), Gaps = 35/412 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A +R+   R     +  P ++   L+V   G   D   KEM  
Sbjct: 12  GMNDILPPDSARWEWFEAKVRDLMGRFAYRNIRTPIVEPTALFVRGLGEVTDIVEKEMYS 71

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+ +   +                           + I   FR E   R    R R+F
Sbjct: 72  FEDKLNGEHLTLRPEGTAGVVRSVVENNLLYEGGKRLFYIGQMFRHERPQRG---RYRQF 128

Query: 156 LMKDAYSFDLTPEGSKH---------SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
                 +                                + LG         +  I    
Sbjct: 129 HQVGVEAMGFAGPELDAEVILLAAQLWKELGIDGVRLELNSLGQPEERKAHRAALIAYFE 188

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI-ISLNSIVEQWTAPYAATSDVHNE 265
            H  ++  +            +D   P+     +     ++ + +   A   A  ++ + 
Sbjct: 189 QHTEVMDEEAKRRMYSNPLRVLDTKNPAMQDMVNAAPKLMDYLGDASKAHLKAVQEILDA 248

Query: 266 K-----LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                 L   L          +        G++ ++     +     +       + G G
Sbjct: 249 NGVAWSLNPRLVRGMDYYNLTVFEFITDKLGSQGTICGGGRYDYLIEEIGGKPAPAVGWG 308

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
                   +      +       V             D        K   +L   G  V 
Sbjct: 309 MGVERVLEVLKEVGAEIPQPAADVYAIIP--------DASALPQVFKTVQQLRAAGVAVQ 360

Query: 381 WDD----MGEQIGSQ---FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
                    E +GS    F  AD  G    +I G+  ++  KV +K    G 
Sbjct: 361 MHAAAGGSAEGMGSMKSQFKKADGSGARFALIFGADELAQGKVTVKSLRDGE 412


>gi|284040464|ref|YP_003390394.1| seryl-tRNA synthetase [Spirosoma linguale DSM 74]
 gi|283819757|gb|ADB41595.1| seryl-tRNA synthetase [Spirosoma linguale DSM 74]
          Length = 423

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 10/200 (5%)

Query: 9   PILQENPRDAEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGA 66
           P L E  +       K  +      +     G   +   G +    +     +E  + G 
Sbjct: 135 PTLHEAAQPHWELIKKYDIIDFELGVKIAGAGFPVYKGKGARIQRAMINFFLDEALKAGY 194

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
           +E+  P L + D    +G+      +M       +  +   PT E  +T+I+R  I +  
Sbjct: 195 VEVQPPILVNEDSGFGTGQLPDKEGQMYFAT---EDKLYLIPTAEVPITNIYRDVILNEN 251

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
            LP         FR E         G+ R  +F   +    +                  
Sbjct: 252 QLPVKNVGYTPCFRREAGSWGAHVRGLNRLHQFDKVEIVRIERPENSYAALEEMSL-HVQ 310

Query: 183 RIFHRLGLKSIPMRAESGPI 202
            +  +L L    +R   G +
Sbjct: 311 SLLQKLELPYRVLRLCGGDM 330


>gi|224538465|ref|ZP_03679004.1| hypothetical protein BACCELL_03359 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519933|gb|EEF89038.1| hypothetical protein BACCELL_03359 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 272

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E  + G +E+  PT+ +A     +G+      +M  
Sbjct: 12  GAGFPVYKGKGAQLQRALINFFLDEARKAGYLEIMPPTVVNAASGYGTGQLPDKEGQMYH 71

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 72  CE---VDDLYLIPTAEVPVTNIYRDVILEEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 128

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL--SHE 209
             EF   +    D  PE S+ S+ +M      +  +L L    +R   G +        +
Sbjct: 129 LHEFSKVELVRIDK-PEHSRQSHKEMLDHVEGLLQKLELPYRILRLCGGDMSFTAALCFD 187

Query: 210 FIVLADTGETQV 221
           F V ++  +  +
Sbjct: 188 FEVYSEAQKRWL 199


>gi|170694780|ref|ZP_02885931.1| Histidine--tRNA ligase [Burkholderia graminis C4D1M]
 gi|170140411|gb|EDT08588.1| Histidine--tRNA ligase [Burkholderia graminis C4D1M]
          Length = 310

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 11/102 (10%)

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFW----DDMGEQIGSQFAVADLLGFPLQVI 405
             + +       R+    I  RL   G DV      D       SQ   AD  G    V+
Sbjct: 198 CDVYVVHQGDAAREQAFIIAERLRDTGLDVILHCSADGQSASFKSQMKRADASGAAFAVV 257

Query: 406 VGSKFVSDSKVEIK-HRLT------GIREDMSLEEVINYASH 440
           +G   +++  V +K  R T        + ++  E++  +  +
Sbjct: 258 LGEDEIANGTVGVKPLRDTNANGGKNEQHNVPAEDLTEFLIN 299


>gi|307609316|emb|CBW98796.1| hypothetical protein LPW_05921 [Legionella pneumophila 130b]
          Length = 426

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 68/212 (32%), Gaps = 12/212 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +    + G  E+ VP + +AD  + +G+   +  ++ +L    D    
Sbjct: 170 ARLHRALIQFMLDIHIQQHGYQEIYVPYIVNADSLLGTGQLPKFEADLFKLT--GDNGYY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+  R  I S   LP  +      FR E     +   G++R  +F   +  
Sbjct: 228 LTSTSEIPVTNTVREMILSAEQLPIRYVCHSPCFRSEAGSYGKDTKGMIRQHQFEKVELV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLADTG 217
                 +       ++      I  RL L    +   +G I          E  + +   
Sbjct: 288 WITKPEDSYNAL-EQLTQHAEVILQRLNLPYRVVALCTGDIGAGSAKTYDLEVWLPSQNT 346

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             ++    +   F        F +  +    +
Sbjct: 347 YREISSCSNMEAFQARRMKARFRNPETNEIQL 378


>gi|326500272|dbj|BAK06225.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 888

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 1/81 (1%)

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
              ++   L   G    +     ++ +    A   G P  V+VG   + D KV++K    
Sbjct: 808 LAAELVNELWSAGIKAEFKLTT-RVQNHIKYATQTGIPWMVLVGESELRDGKVKLKDITA 866

Query: 424 GIREDMSLEEVINYASHRFSN 444
              E++  ++ +     R SN
Sbjct: 867 NQEEEVPRKDFVEVLKQRLSN 887


>gi|148657569|ref|YP_001277774.1| seryl-tRNA synthetase [Roseiflexus sp. RS-1]
 gi|166223283|sp|A5UYX1|SYS_ROSS1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|148569679|gb|ABQ91824.1| seryl-tRNA synthetase [Roseiflexus sp. RS-1]
          Length = 424

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 58/213 (27%), Gaps = 12/213 (5%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
                Y     G +    +   + +   + G  E+  P +        + +   +   + 
Sbjct: 158 SGSRFYVLKGPGARLQRALIQWMLDLHGKQGYDEVYTPFVVKEQCMWGARQLPKFRDNLY 217

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVM 150
           R     +  +   PT E  +T++ R  I     LP  +      FR E         G+ 
Sbjct: 218 RD---VEDDLWLVPTAEVPVTNLHRDEILDADQLPLRYCAYTPCFRREKMSAGRDVRGIK 274

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDL 206
           R  +F   + Y F            K+          LGL        +G +        
Sbjct: 275 RGHQFDKVEMYMFVRPETSYDEL-EKLRADAEETCRLLGLPFRTKELCTGDLGFAATRTY 333

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             E          +V    +   F   + N  +
Sbjct: 334 DIEVWAPGQGEWLEVSSCSNVEAFQARAANIRY 366


>gi|315026714|gb|EFT38646.1| seryl-tRNA synthetase [Enterococcus faecalis TX2137]
          Length = 423

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 76/214 (35%), Gaps = 13/214 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    V   + ++  N  G  E+  P L ++     +G++  + +++ ++    +  
Sbjct: 169 LGARLERAVYNFLLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQV---AESD 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILDAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F       +        +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVRFSDAEHSYEELEKMT-NNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
               ++    +  DF        + D        
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGHVQYA 378


>gi|171911399|ref|ZP_02926869.1| seryl-tRNA synthetase [Verrucomicrobium spinosum DSM 4136]
          Length = 423

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 73/247 (29%), Gaps = 17/247 (6%)

Query: 14  NPRDAEIASHK---LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEM 69
            P+D      +   L    G           +   G +    +   + +      G  E+
Sbjct: 137 APKDHVALGAQHGMLDFEAG-AKITGSAFVVYRGAGARLERALINFLLDLHTTSHGYTEV 195

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
           + P +  AD  V + +   +  ++       +  +   PT E  +T++ R  I    +LP
Sbjct: 196 NTPFVVKADALVGTTQLPKFADQVYHCQ---EDDLYLVPTAEVPVTNLHREEIVKAESLP 252

Query: 130 FTFYQIQLKFRDELR----PRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
             +      FR E         G++R  +F   +                K+  +   + 
Sbjct: 253 IQYAAYTPCFRREAGSAGLGTRGLIRMHQFDKVELVKITTPETSMDEL-EKLTANAEAVL 311

Query: 186 HRLGLKSIPMRAESGPI----GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             LGL    +   +G +          E          +V    +F +F     N  + D
Sbjct: 312 QTLGLHYRIIELCTGDVGFGSTKTYDIEVWAPGQGTYLEVSSCSNFGEFQARRMNLRYKD 371

Query: 242 IISLNSI 248
               N  
Sbjct: 372 ENGKNRF 378


>gi|94985224|ref|YP_604588.1| histidyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
 gi|123079905|sp|Q1IZB5|SYH_DEIGD RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|94555505|gb|ABF45419.1| histidyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
          Length = 431

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 54/403 (13%), Positives = 113/403 (28%), Gaps = 19/403 (4%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKA-MIYGPT 109
           V    R    R GA  ++ P  + A+L      G  D   KEM  +    D    +  P 
Sbjct: 32  VQDTARRVLERAGAQFIATPLFEEAELVRRGVGGSTDIVRKEMFTVYYFGDHGGYVLRPE 91

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDLTPE 168
               +   +  +       P   +     FR E   +    R R+F   D        P 
Sbjct: 92  GTAGIVRAYLQNGLKQLPAPLKLWTHGPMFRAENVQKG---RLRQFHQVDYEALGSADPL 148

Query: 169 GSKHSYNKMFVSYLRIFHR--------LGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
               +   M+     +           +G  +      +        H   +  D+ +  
Sbjct: 149 VDAEAIWLMWEVVRELGLTGVRVKLGSIGDPADREAYNAYLRDCFTPHAARLSDDSRDRL 208

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP-ENKRVSA 279
                  +D     +     ++     +     A  +  + V       ++P +      
Sbjct: 209 TRNPMRILDSKSTGDQALIGELQVKPMLDFLGEAASSHFAAVQAYLRAWNVPFDIDPAIV 268

Query: 280 RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
           RG++      +   +    + +  G  G+   +     G     +  A            
Sbjct: 269 RGLDYYRRTAWELHHQGVGAKSALGGGGRYDGLSTQLGGPEVPGIGWAFGIERLLLALEA 328

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGC-DVFWDDMGEQIGSQFAVADLL 398
              +       L+ + A D+        +   L       V +     +  + F  AD  
Sbjct: 329 EGVTFPEESGPLLFLAALDEEHVARAAGLA--LEGRRVARVEFAYRALKPANAFKEADRR 386

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                 ++GS       + IKH  +G ++++ L  +  + + R
Sbjct: 387 RARYAGLLGSDEAERGVLTIKHLASGEQQEVPLAALNTFLAER 429


>gi|145590899|ref|YP_001152901.1| histidyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
 gi|166228601|sp|A4WIN2|SYH_PYRAR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|145282667|gb|ABP50249.1| histidyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
          Length = 419

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/420 (10%), Positives = 116/420 (27%), Gaps = 35/420 (8%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLRL 96
           G+  W+P    AL  +  ++     + G   +  P ++  + L  ++G+      E+   
Sbjct: 14  GMRDWMPQQLYALRRMEEVLSSVAEQYGYRRVETPVVEHFEVLAKKAGQ--EVINEIYYF 71

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+  + +         +  +   ++   R + + ++    ++     P+ G  R  EF 
Sbjct: 72  RDKAGRELGLRFDMTVPIARVLSYNLDLPRPVRWYYFSKVFRY---DEPQHGRYR--EFF 126

Query: 157 MKDAYSFDLTPEGSKHSYNKMFV---------SYLRIFHRLGLKSIPMRAESGPIGGDLS 207
                        +     ++            Y+   +        + +       D  
Sbjct: 127 QFGVELIGSASPRADAEVVQLLAASLEAAGASKYVIRINDRRAVDKLLESLGALSHRDAV 186

Query: 208 HEFIVLADTGETQVFCSKDFM-----DFPIPSENTDFDDIISLNSIV-EQWTAPYAATSD 261
           +  +        +             D      +T  +  +     V  +          
Sbjct: 187 YRALDKKLKLPREEVIGIMTSGGLPRDAAEKIYDTASEMSLDEAVEVLRRLDGRLGEAYA 246

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
              + L  ++P  +      I  G  +Y G  +       +  A G              
Sbjct: 247 KFVKYLEAAVPLERFKFDMSIVRGLDYYTGVVF-EAFVGDYWLAVGGGGRYDDLLELYSG 305

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
           +++ A       +              +    I   D         +  RL K G  V  
Sbjct: 306 VKIPALGFAIGVERLMEAVGLQSVEKPLDYY-IYIFDDDAYKHAVALANRLRKQGHSVVV 364

Query: 382 DDMGEQIGSQ-FAV-AD---LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVIN 436
           +     +G +      +    +G    V++G K +    V+I+        ++ L  +++
Sbjct: 365 E-----LGEKNLKDVFEYVLKIGTRYLVLIGRKELEKGVVKIRDLQKRGEVEVPLSALLS 419


>gi|54296544|ref|YP_122913.1| seryl-tRNA synthetase [Legionella pneumophila str. Paris]
 gi|67461683|sp|Q5X7N0|SYS_LEGPA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|53750329|emb|CAH11723.1| hypothetical protein lpp0575 [Legionella pneumophila str. Paris]
          Length = 426

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 8/161 (4%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +    + G  E+ VP + +AD  + +G+   +  ++ +L    D    
Sbjct: 170 ARLHRALIQFMLDIHIQQHGYQEIYVPYIVNADSLLGTGQLPKFEADLFKLT--GDNGYY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+  R  I S   LP  +      FR E     +   G++R  +F   +  
Sbjct: 228 LTSTSEIPVTNTVREMILSAEQLPIRYVCHSPCFRSEAGSYGKDTKGMIRQHQFEKVELV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                 +       ++      I  RL L    +   +G I
Sbjct: 288 WITKPEDSYNAL-EQLTQHAEVILQRLNLPYRVVALCTGDI 327


>gi|333028341|ref|ZP_08456405.1| putative histidyl-tRNA synthetase [Streptomyces sp. Tu6071]
 gi|332748193|gb|EGJ78634.1| putative histidyl-tRNA synthetase [Streptomyces sp. Tu6071]
          Length = 420

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 61/423 (14%), Positives = 117/423 (27%), Gaps = 30/423 (7%)

Query: 38  GIYSWLPL--G--QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           G Y  LP   G      + + A +R+     G   +  P  +   L+        D   K
Sbjct: 9   GTYDLLPPDSGRFLAVREAIAAPLRD----AGYGYIETPGFEDVRLFARGVGESTDIVSK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVM 150
           EM     +    +   P     +             NLP   +    ++R E   +    
Sbjct: 65  EMYVFTTKGGDELALRPEGTAAVLRAVLESNLHKTGNLPVKVWYSGSQYRYERPQKG--- 121

Query: 151 RSREFLMKDAY-SFDLTPEGSKHSYNKMFVSY--LRIFHRLGLKSIPMRAESGPIGGDLS 207
           R R F    A       P            +Y  L +     L +    A   P+     
Sbjct: 122 RYRHFSQVGAEAIGAEDPLLDAELIILADQAYRSLGLTRHRILLNSLGDATCRPVYRAAL 181

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
            +F+   D  E      +      +  +  +  D ++   ++  +              L
Sbjct: 182 QDFLRALDLDEETRRRVEINPLRVLDDKRPEVRDQLTGAPLLADYLCDACKAYHEEVRAL 241

Query: 268 FDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
            D      E+     RG++      F   +    S +  G  G+   +     G     V
Sbjct: 242 LDGAGVRYEDDPKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMLGGPELPSV 301

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM 384
             A+               +    ++ +      +  R A  +    L + G        
Sbjct: 302 GWALGVDRTVLALEAEGVVLDLPPVTSVYAIPLGEAARRALFEKVTELRRSGIATDL--- 358

Query: 385 GEQIGSQ-----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
               G +        A+  G  L +I G + + D  V++K   +G +  + L + +    
Sbjct: 359 --SFGGRGLKGAMKSANRSGARLALIAGERDLVDGSVQLKDLESGEQHAVPLAQAVAEIQ 416

Query: 440 HRF 442
              
Sbjct: 417 RLL 419


>gi|311250313|ref|XP_003124081.1| PREDICTED: histidyl-tRNA synthetase, cytoplasmic-like [Sus scrofa]
          Length = 509

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/455 (12%), Positives = 119/455 (26%), Gaps = 51/455 (11%)

Query: 31  MIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYG 90
            + +  KG   + P      + V  +I     R GA  +  P  +  +    +G+Y    
Sbjct: 54  FVLKTPKGTRDYSPRQMAVREKVFDVIIGCFKRHGAEVIDTPVFELKETL--TGKYGEDS 111

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
           K +  L D+  + +                   +   L         K      P     
Sbjct: 112 KLIYDLKDQGGELLSLRYDLTVPFA-----RYLAMNKLTNIKRYHIAKVYRRDNPAMTRG 166

Query: 151 RSREFLMKDAYS--FDLTPEGSKHSYNKMFVSY--LRIFHRLGLKSIPMRAE-SGPIGGD 205
           R REF   D                   M      L+I   L   +     +    I G 
Sbjct: 167 RYREFYQCDFDIAGQFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGLFAICGV 226

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV--- 262
              +F  +  + +     S + +   +  E     ++        Q     +    +   
Sbjct: 227 PDTKFRTICSSVDKLDKMSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQD 286

Query: 263 ----HNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG 318
                N++  + L + K +       G         SL     +      +  +      
Sbjct: 287 PKLSQNKQALEGLGDLKLLFEYLTLFGVADKISFDLSLARGLDYYTGVIYEAVLLQPPAQ 346

Query: 319 IGAMRVVAAVIE--SSHDGKGIIWPDSVAPFKISLINIKAHD---------QVCRDACE- 366
            G   +    +     +DG   ++           ++I             +   +    
Sbjct: 347 AGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKVRT 406

Query: 367 -------------------KIYARLSKVGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIV 406
                              K+ + L   G           ++ +Q    +  G PL  I+
Sbjct: 407 TETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAII 466

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           G + + D  V+++   +    D+  E+++     R
Sbjct: 467 GEQELKDGVVKLRSVTSREEVDVRREDLVEEIKRR 501


>gi|290967982|ref|ZP_06559531.1| serine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781888|gb|EFD94467.1| serine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 424

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 74/239 (30%), Gaps = 17/239 (7%)

Query: 14  NPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIE 68
            P++       L +    R   +       Y ++  G +    V   + +    + G  E
Sbjct: 135 TPKEHWEIGENLGILDAERAAKV--AGARFYYYIGAGARLERAVYNFMLDRHTEKDGYTE 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           +  P + +      +G+   + ++M +L     + M   PT E  +T+ +   I     L
Sbjct: 193 VIPPYIVNRKAMTGTGQLPKFSEDMYQLQ-VEGQDMFLIPTAEVPLTNYYSGEILRADQL 251

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P     +   FR E     R   G++R  +F   +   +                    I
Sbjct: 252 PVYVTALTPCFRAEAGSAGRDTRGLIRQHQFHKVEMVKYTTPESSYDELDKLTRN-AEDI 310

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEF----IVLADTGETQVFCSKDFMDFPIPSENTDF 239
              L L    +   +G IG   +  F       A     ++    +  DF     N  F
Sbjct: 311 LKALELPYHVVCLCTGDIGFSAAKTFDVEVWFPAQGKYREISSCSNTEDFQARRANIRF 369


>gi|187735890|ref|YP_001878002.1| Histidine--tRNA ligase [Akkermansia muciniphila ATCC BAA-835]
 gi|187425942|gb|ACD05221.1| Histidine--tRNA ligase [Akkermansia muciniphila ATCC BAA-835]
          Length = 424

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 67/420 (15%), Positives = 132/420 (31%), Gaps = 24/420 (5%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLR 95
            G   + P      + +    ++  +R G +E   PT+++ +L+  +SG       ++ R
Sbjct: 10  PGFRDFAPADCAVRNYLFNAWKKVAHRYGFLEWEGPTVEATELYLKKSG--GELPTQLFR 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D+ D+ +   P     +  I  ++ + Y   P  +++I   FR E   +    R REF
Sbjct: 68  FTDQGDRDITIRPELTASLGRIAAAYQREYTK-PLKWFEIGSCFRYEKPQKG---RLREF 123

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLAD 215
              +A         +      + +  +R         I   ++        S   +   D
Sbjct: 124 YQFNADILGEASAWADSELIALAIDCMRELGFTQNDFIVRVSDREAWIRFASEHGVQEQD 183

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN- 274
                    K   D P   +       IS   +V     P A  S+ ++  + D      
Sbjct: 184 IPAFLGIVDKFERDRPEECQRKLDAFHISRGDLVAFIENPPAGASERYDILMKDLTARGL 243

Query: 275 ------KRVSARGI--EVGHIFY-FGTKYSLPMSA---TFKGADGKDHYVQMGSYGIGAM 322
                      RG+    G +F  F T+ SL   A    +    G      +     G  
Sbjct: 244 DGYVKLDLSVVRGLAYYTGLVFEIFDTQRSLRAVAGGGRYDTLVGALSNNAVDMPATGFA 303

Query: 323 RVVAAVIE-SSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
              A +              D+        I +    +  R     I + L   G  V  
Sbjct: 304 MGDAVITHLIEQTPHARALKDAALASAGCDIFMVQASESRRAEVLAIVSALRDQGYSVDL 363

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
                ++  Q   A   G    +IVG +F     +E++         ++++++ +  +  
Sbjct: 364 PLTLTKVNGQLQKAVKSGARAALIVGDEF---PVMELRDLGARTSSPVAMDDLFDAVASL 420


>gi|218438799|ref|YP_002377128.1| seryl-tRNA synthetase [Cyanothece sp. PCC 7424]
 gi|226701389|sp|B7KCF5|SYS_CYAP7 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|218171527|gb|ACK70260.1| seryl-tRNA synthetase [Cyanothece sp. PCC 7424]
          Length = 430

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 66/207 (31%), Gaps = 12/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + + Q   G +E+  P L +      +G+   + +E  + +   +  + 
Sbjct: 176 GAALERALINFMLDRQIEAGYLEVMPPILINTTSLQGTGQLPKFSEESFKCS---EDELW 232

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R ++     LP         FR E     +   G++R  +F   +  
Sbjct: 233 LAPTAEVPVTNLYRDNVIEGEQLPIKHCAYTPCFRREAGSYGKDTRGLIRLHQFNKVELV 292

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLADTG 217
                          +      I   L L    +   +G +          E  + +   
Sbjct: 293 KLVHPETSEAEHEALVKD-AEAILQALKLPYRVIELCTGDLGFGAAKCYDIEVWLPSSDT 351

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +F DF     N  F +   
Sbjct: 352 YREISSCSNFRDFQARRANIRFKEKGK 378


>gi|160886575|ref|ZP_02067578.1| hypothetical protein BACOVA_04586 [Bacteroides ovatus ATCC 8483]
 gi|260173328|ref|ZP_05759740.1| histidyl-tRNA synthetase [Bacteroides sp. D2]
 gi|293373217|ref|ZP_06619579.1| histidine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|315921601|ref|ZP_07917841.1| histidyl-tRNA synthetase [Bacteroides sp. D2]
 gi|156108460|gb|EDO10205.1| hypothetical protein BACOVA_04586 [Bacteroides ovatus ATCC 8483]
 gi|292631865|gb|EFF50481.1| histidine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|313695476|gb|EFS32311.1| histidyl-tRNA synthetase [Bacteroides sp. D2]
          Length = 454

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 5/129 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ I   ++        I +++ 
Sbjct: 329 FGMAGVSGVGISFGADRIFDVLNQLELYPKEAVNGTELLFINFGEKEA-AFSMGILSKVR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G       D    ++  Q + A+    P   IVG   +++ K  +K+  TG +  +S 
Sbjct: 388 AAGIRAEIFPD--AAKMKKQMSYANTKNIPFVAIVGENEMNEGKAMLKNMETGEQNLVSA 445

Query: 432 EEVINYASH 440
           EE+I     
Sbjct: 446 EELIAVVKK 454


>gi|224068773|ref|XP_002326196.1| predicted protein [Populus trichocarpa]
 gi|222833389|gb|EEE71866.1| predicted protein [Populus trichocarpa]
          Length = 441

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 58/413 (14%), Positives = 124/413 (30%), Gaps = 28/413 (6%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-VESGRYDSYGKEMLRLADRNDK 102
           P   +    +    RE     G  E+  P L+S  L+  ++G  +    ++    DR ++
Sbjct: 34  PEEMRLRSWLFHNFREVSRLFGFEEVDYPVLESEALFIRKAG--EEIRDQLYCFEDRGNR 91

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +   P     +  +     KS  +LP  ++ I   +R E   R    R RE    +   
Sbjct: 92  RVALRPELTPSLARLVIQKGKS-LSLPLKWFAIGQCWRYERMTRG---RRREHYQWNMDI 147

Query: 163 FDLTPEGSKHS----YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGE 218
             +    ++          F         +G K    +     I    S    + A    
Sbjct: 148 IGVPEVTAEAELISSIVTFFKQIGISASDVGFKVNSRKVVLQEILRSYSLSENLFAKVCV 207

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVS 278
                 K  +D      N+       +N ++E  +    +  +       +++ + K++ 
Sbjct: 208 IIDKIEKIPIDEIKKELNSVGMPQEGVNKLLEVLSIKSLSELEEILGGAGEAIADLKQLF 267

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFK--------GADGKDHYVQMGSY-----GIGAMRVV 325
           +   + G+  +     S+     +            GK   +  G              +
Sbjct: 268 SLAEKFGYSEWIQFDASVVRGLAYYTGIVFEGFDRAGKLRAICGGGRYDRLLSTFGGDDL 327

Query: 326 AAVIESSHDGKGIIWPDS----VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
            A      D   I                   + A D   + A   +   L + G  V  
Sbjct: 328 PACGFGFGDAVIIELLKEKGILPELIPQVENIVCALDHDLQGAAATVATMLREKGQSVDL 387

Query: 382 DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               + +   F  A  +     ++VG+       V +K   +G + ++ ++E+
Sbjct: 388 VLESKPLKWVFKRAARINAQRLILVGNTEWKKGMVSVKILSSGEQSEIKIDEL 440


>gi|171920478|ref|ZP_02931777.1| seryl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|171902936|gb|EDT49225.1| seryl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC 27813]
          Length = 418

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 72/213 (33%), Gaps = 12/213 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G +    +     +   + G  E+  P + + +  + SG    +  ++ +L +
Sbjct: 164 FIIYTNFGARLYRALQQFCLDMNVKAGFSEIWAPVIVNQESLIGSGNLPKFADDLFKLEN 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N       PT E  +T++ R+ I    +LP  +  +   FR E     R   GV+R  +
Sbjct: 224 SN---YYLSPTAEVQLTNLHRNEILKASDLPLYYTALTPCFRSEAGSAGRDVRGVIRQHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +        +  K   +        I   L L    +   +G +G   +     E 
Sbjct: 281 FHKVELVKLCKPEDSFKELESMTRQ-AESILEALELPYRRIVLCTGDLGFSSAKTYDLEV 339

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            + +     ++    +  +F        + + I
Sbjct: 340 WLPSYNAYKEISSCSNCTNFQARRAKIRYKETI 372


>gi|13357663|ref|NP_077937.1| seryl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762301|ref|YP_001752189.1| seryl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|183508823|ref|ZP_02958276.1| seryl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701768|ref|ZP_02971450.1| seryl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|30173220|sp|Q9PR38|SYS_UREPA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|189083594|sp|B1AI95|SYS_UREP2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|11271515|pir||D82932 seryl-tRNA synthetase UU106 [imported] - Ureaplasma urealyticum
 gi|6899062|gb|AAF30512.1|AE002111_1 seryl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827878|gb|ACA33140.1| seryl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|182675788|gb|EDT87693.1| seryl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701042|gb|EDU19324.1| seryl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 418

 Score = 63.6 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 72/213 (33%), Gaps = 12/213 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G +    +     +   + G  E+  P + + +  + SG    +  ++ +L +
Sbjct: 164 FIIYTNFGARLYRALQQFCLDMNVKAGFSEIWAPVIVNQESLIGSGNLPKFADDLFKLEN 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N       PT E  +T++ R+ I    +LP  +  +   FR E     R   GV+R  +
Sbjct: 224 SN---YYLSPTAEVQLTNLHRNEILKASDLPLYYTALTPCFRSEAGSAGRDVRGVIRQHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +        +  K   +        I   L L    +   +G +G   +     E 
Sbjct: 281 FHKVELVKLCKPEDSFKELESMTRQ-AESILEALELPYRRIVLCTGDLGFSSAKTYDLEV 339

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            + +     ++    +  +F        + + I
Sbjct: 340 WLPSYNAYKEISSCSNCTNFQARRAKIRYKETI 372


>gi|221195108|ref|ZP_03568164.1| seryl-tRNA synthetase [Atopobium rimae ATCC 49626]
 gi|221185011|gb|EEE17402.1| seryl-tRNA synthetase [Atopobium rimae ATCC 49626]
          Length = 427

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 72/211 (34%), Gaps = 13/211 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
            Y    LG +    +   + ++ N+ G  E   P + + D    +G+   +  ++  +  
Sbjct: 165 FYLLGGLGARMERALINFMIDQHNKAGFKEFWPPVITNHDSLFGTGQLPKFEDDLYHVQ- 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                +   PT E  +T+I R  I     LP  +      FR+E     R   G++R  E
Sbjct: 224 ---PDLYLIPTAEVQLTNIHRGEILDADQLPLLYTAFTPCFREEAGSAGRDTRGIIRVHE 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F    +      + +     +I   L L    +   +G +G   +     E 
Sbjct: 281 FDKVEMVKFSKPEDSMNQLESMVTE-AEKILQLLKLPYHVVTLCTGDLGFSAAKCYDIEV 339

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            + +     ++    +  DF        F D
Sbjct: 340 WLPSYNNYKEISSCSNCKDFQARRAGIRFKD 370


>gi|110003912|emb|CAK98252.1| seryl-trna synthetase protein [Spiroplasma citri]
          Length = 422

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 71/221 (32%), Gaps = 12/221 (5%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
                  +  +G K    +   + +E  + G IE+  P L    +   +G    + +++ 
Sbjct: 160 SGSRFVVYKGMGAKLERALMNFMLDEHAKRGYIEIEPPILVQPQIMYGTGNLPKFKEDLY 219

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +   N   +   PT E  +T+++R  I     LP         FR E     R   G++
Sbjct: 220 YIEKDN---LYLIPTSEVPVTNLYREEILEKDQLPIYHTAYTPCFRQESGSAGRDTKGII 276

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-- 208
           R  +F   +   F       +     +      I   L +    +   SG +G   +   
Sbjct: 277 RLHQFKKVEMVKFTTEEASFEELEKMVLD-AENILQLLEIPYRVILLCSGDMGFSSTKTY 335

Query: 209 --EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNS 247
             E  +       ++    + +DF        + D   +  
Sbjct: 336 DVEVWMPGQNKYREISSCSNCLDFQARRMKLRYRDDNEIKY 376


>gi|32458|emb|CAA28956.1| unnamed protein product [Homo sapiens]
          Length = 508

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 54/482 (11%), Positives = 132/482 (27%), Gaps = 53/482 (10%)

Query: 11  LQENPRDAEIA----SHKLMLRTG---------MIHQHSKGIYSWLPLGQKALDNVNAII 57
           L++    AE+     +  L L+            + +  KG   + P      + V  +I
Sbjct: 21  LKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKGTRDYSPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +  +  G+Y    K +  L D+  + +             
Sbjct: 81  IRCFKRHGAEVIDTPVFELKETLM--GKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARY 138

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKM 177
              +  +           +         R+    + +F +   +        S     ++
Sbjct: 139 LAMNKLTNIKRYHIAKVYRRDNPAMTGGRYPNSITVDFDIAGQFDPMNPDAESLKIMCEI 198

Query: 178 FVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENT 237
             S       + +    +      + G    +F  +  + +     S + +   +  E  
Sbjct: 199 LSSLQIGNFLVKVNDRRILDGMFAVCGVPDSKFRTICSSVDKLDKVSWEEVKNEMVGEKG 258

Query: 238 DFDDIISLNSIVEQWTAPYAATSDV-------HNEKLFDSLPENKRVSAR----GIEVGH 286
              ++        Q     +    +        N++  + L + K +       GI+   
Sbjct: 259 LAPEVADRIGDYVQQHGGVSLVEQLVQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKI 318

Query: 287 IFYFG-----TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
            F          Y+  +              +      G  R    ++      +  +  
Sbjct: 319 SFDLSLARGLDYYTGVIYEAVLLQTPAQEGEEPWCGQCGCWRRYDGLVGMFDPQRRKVAM 378

Query: 342 DSVAPFKISLINIKAHDQVCRD--------------ACEKIYA-------RLSKVGCDV- 379
                +   + +I        +              A +K+         RL   G    
Sbjct: 379 CGAQHWGGRIFSIVEQRLEALEEKIRTTETQVLVASAQKKLARGKTKACLRLWDAGIKAE 438

Query: 380 FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
                  ++ +Q    +  G PL  I+G + + D  ++++   +    D+  EE++    
Sbjct: 439 LLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREELVEEIK 498

Query: 440 HR 441
            R
Sbjct: 499 RR 500


>gi|297621143|ref|YP_003709280.1| hypothetical protein wcw_0913 [Waddlia chondrophila WSU 86-1044]
 gi|297376444|gb|ADI38274.1| hypothetical protein wcw_0913 [Waddlia chondrophila WSU 86-1044]
          Length = 509

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
            Q       +I   L + G  V  D     +  + +VA+    P  V+VG +   +  V 
Sbjct: 416 KQEDVAWAVEIAEELIENGYRVHCDADPGSLSEKVSVANQYKVPYIVVVGKREREEQAVS 475

Query: 418 IKHRLTGIR-EDMSLEEVINYASHR 441
           ++    G +   +S E  +     +
Sbjct: 476 VRCSSKGNKASVVSFELFMEELKKQ 500


>gi|296111415|ref|YP_003621797.1| seryl-tRNA synthetase [Leuconostoc kimchii IMSNU 11154]
 gi|295832947|gb|ADG40828.1| seryl-tRNA synthetase [Leuconostoc kimchii IMSNU 11154]
          Length = 436

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 71/204 (34%), Gaps = 12/204 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + ++ ++ G  EM  P + +      +G+Y  +  +  R+         
Sbjct: 179 GARLERAVYNFMLDQHHQEGYTEMITPIVVNDSAMFGTGQYPKFQDDAYRVE---GLEQT 235

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
           Y PT E  +T+ +       ++LP  F  +   FR E     +   G++R  +F   +  
Sbjct: 236 YIPTAEVPLTNYYAGETLPGQDLPIKFTALSPSFRKEAGSAGKDTRGLIRLHQFNKVEMV 295

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F    +           +   I  +LGL    +   +G +G   +     E  +     
Sbjct: 296 KFTKPEQSYDELEKMT-DNAENILRQLGLPYHVIMLSTGDMGFSAAKTYDVEVWMPQQNT 354

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF     +  F D
Sbjct: 355 YREISSVSNTEDFQARRMHITFRD 378


>gi|294795199|ref|ZP_06760333.1| serine--tRNA ligase [Veillonella sp. 3_1_44]
 gi|294453991|gb|EFG22366.1| serine--tRNA ligase [Veillonella sp. 3_1_44]
          Length = 426

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 66/204 (32%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    +   + +   ++ G  EM  P + + +    +G+   + ++M  +       
Sbjct: 168 LGARLERALINFMVDLHVDKHGYTEMMTPYMVTRETLTGTGQLPKFAEDMYHVE---GTE 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T+     I S   LP  +      FR E     R   G++R  +F   +
Sbjct: 225 YFLIPTAEVTLTNYHGGEIFSEEELPKYYTAFTACFRAEAGSAGRDTRGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLAD 215
                   +  K     +  +   +   L L    +   +G +          E  + A 
Sbjct: 285 MVKLAKPEDSFKEL-ETLTDNAEEVLRLLELPFRVITLCTGDMGFGSAKTYDVEVWMPAQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     N  F
Sbjct: 344 GKYREISSCSNMTDFQARRANIKF 367


>gi|149241134|pdb|2DQ3|A Chain A, Crystal Structure Of Aq_298
 gi|149241135|pdb|2DQ3|B Chain B, Crystal Structure Of Aq_298
          Length = 425

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 69/208 (33%), Gaps = 12/208 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G +    +     +   + G  E+  P L   ++ + +G+   + +++ +    N   +
Sbjct: 170 WGARLERALINFXLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCERDN---L 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMRSREFLMKDA 160
              PT E  +T+++R  I    NLP         +R E         G++R  +F   + 
Sbjct: 227 YLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
                           +      +   LGL    +   +G +G   +     E    +  
Sbjct: 287 VKIVHPDTSYDELEKLVKD-AEEVLQLLGLPYRVVELCTGDLGFSAAKTYDIEVWFPSQN 345

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIIS 244
              ++    +  DF     NT F D  +
Sbjct: 346 KYREISSCSNCEDFQARRXNTRFKDSKT 373


>gi|94967422|ref|YP_589470.1| seryl-tRNA synthetase [Candidatus Koribacter versatilis Ellin345]
 gi|94549472|gb|ABF39396.1| seryl-tRNA synthetase [Candidatus Koribacter versatilis Ellin345]
          Length = 432

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 7/171 (4%)

Query: 45  LGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG K    +   + +   +  G  E+  P L +AD    +G+   +  ++ ++    ++ 
Sbjct: 172 LGAKLERALMNFMLDLHTKEHGYTEVLPPFLVNADSMYGTGQLPKFEADLFKVPH-GERN 230

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+++R        LP +       FR E     +   G++R  +F   +
Sbjct: 231 LYLIPTAEVPVTNLYRDETLDAAQLPTSLTAYTPCFRSEAGSYGKDVRGIIRQHQFQKVE 290

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
              F    E               +  RLGL    M   +G +G   +  +
Sbjct: 291 LVKFTKPEESYAEHEKLTRN-AEEVLQRLGLHYRTMVLCTGDMGFSSAKTY 340


>gi|29347250|ref|NP_810753.1| histidyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253571985|ref|ZP_04849390.1| histidyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|32130101|sp|Q8A6N7|SYH_BACTN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|29339149|gb|AAO76947.1| histidyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251838582|gb|EES66668.1| histidyl-tRNA synthetase [Bacteroides sp. 1_1_6]
          Length = 454

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 5/129 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ +   D+        + A++ 
Sbjct: 329 FGMAGVSGVGISFGADRIFDVLNQLELYPKEAVNGTELMFVNFGDKEA-AFSMSMLAKVR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G       D    ++  Q + A+    P   IVG   +++ K  +K+  TG +  +S+
Sbjct: 388 AAGIRAEIFPD--AAKMKKQMSYANAKSVPFVAIVGENEMNEGKAMLKNMETGEQNLVSV 445

Query: 432 EEVINYASH 440
           EE+I    +
Sbjct: 446 EELIAALRN 454


>gi|257052836|ref|YP_003130669.1| seryl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
 gi|256691599|gb|ACV11936.1| seryl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
          Length = 451

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 67/200 (33%), Gaps = 17/200 (8%)

Query: 11  LQENPRD---AEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR 63
           L++ P D         +L +    R   +     G Y       +    +   +R+    
Sbjct: 134 LRDLPEDVTPHYDLGEELDILDFERGAKV--SGGGFYFLKGDAARLEHALIQFMRDIHRE 191

Query: 64  TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            G  E+  P   S++    +G+   +  +  +L +     +   PT E  +T+++R  I 
Sbjct: 192 QGYEEVFPPIPVSSESMTGTGQLPKFADDAYKLEEE---DLWLCPTAEVPVTNMYRDEIL 248

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
              +LP         FR E         G++R  +F  K      + PE S      +  
Sbjct: 249 LDDDLPLKHQAYTPNFRQEAGEHGTETRGIVRVHQFN-KVELVNFVEPEESDERLEGLLD 307

Query: 180 SYLRIFHRLGLKSIPMRAES 199
               +  RL L    +   +
Sbjct: 308 EAEEVLRRLELPYRILELCT 327


>gi|308272097|emb|CBX28705.1| Seryl-tRNA synthetase [uncultured Desulfobacterium sp.]
          Length = 431

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 8/139 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G K   ++   + E      G  E+  P + ++     +G+   +  ++ +L 
Sbjct: 169 FPLYFGAGAKLERSIINFMLEIHTTEHGYTEVLPPFIVNSQSLTSTGQLPKFKDDLFKLE 228

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                     PT E  +T+I ++ I    +LP  +      FR E     +   G++R  
Sbjct: 229 ---GWDYYMVPTAEVPVTNIHQNEILDESDLPILYTAYTPCFRSEAGSYGKDTKGLIRQH 285

Query: 154 EFLMKDAYSFDLTPEGSKH 172
           +F   +   F         
Sbjct: 286 QFNKVELVKFVKPETSYDE 304


>gi|307566104|ref|ZP_07628562.1| serine--tRNA ligase [Prevotella amnii CRIS 21A-A]
 gi|307345292|gb|EFN90671.1| serine--tRNA ligase [Prevotella amnii CRIS 21A-A]
          Length = 429

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 77/221 (34%), Gaps = 10/221 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   +E  ++G +E+  P + +    + +G+      +M  
Sbjct: 164 GAGFPIYIGKMARFQRALEAFFLDEARKSGYLEVQPPLVVNQASGLGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+IFR  I   ++LP         FR E     +   G+ R
Sbjct: 224 ATL---DDLYLIPTAEVPVTNIFRDEILDEKDLPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHE 209
             +F   +    D TP+ S  S  +M      +  +L L    +R   G +     + ++
Sbjct: 281 LHQFDKVEIVRID-TPKHSYDSLKEMLDHVEGLLKKLELPYHILRLCGGDMSFTSAICYD 339

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           F V +   E  +  S         +           +  +E
Sbjct: 340 FEVWSAAQERWLEVSSVSNFESYQANRLHCRYRHLEDKKIE 380


>gi|284047518|ref|YP_003397857.1| seryl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
 gi|283951739|gb|ADB46542.1| seryl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
          Length = 426

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 73/210 (34%), Gaps = 13/210 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
            Y +   G +    V   + ++   + G +E+  P + +      +G+   + ++M ++ 
Sbjct: 162 FYYYKGAGARLERAVYNFMLDQHTRKDGYMEVIPPYIVNTASMTGTGQLPKFHEDMYKVE 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
               + M   PT E  +T+ +R  I +  +LP     +   FR E     R   G++R  
Sbjct: 222 ---GQDMYLIPTAEVPLTNYYRGEILNGDDLPIYLTAMTPCFRAEAGSAGRDTRGLIRQH 278

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F            K+  +   I   L L    +   +G +G   +     E
Sbjct: 279 QFHKVEMVKFCKPETSYDEL-EKLVGNAEDILKALKLPYHVVCLCTGDLGFSAAKCYDVE 337

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDF 239
                     ++    +  DF     N  F
Sbjct: 338 VWFPEQNKYREISSCSNTEDFQARRANIRF 367


>gi|315608195|ref|ZP_07883187.1| serine--tRNA ligase [Prevotella buccae ATCC 33574]
 gi|315250164|gb|EFU30161.1| serine--tRNA ligase [Prevotella buccae ATCC 33574]
          Length = 429

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 71/212 (33%), Gaps = 12/212 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +L    +    + A   EE  + G +E+  P + +      +G+      +M  
Sbjct: 164 GAGFPVYLGKMARFQRALEAFFLEEARKAGYLEVQPPFVVNQASGYGTGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+IFR  I   + LP         FR E     +   G+ R
Sbjct: 223 --HANLDDLYLIPTAEVPVTNIFRDEILDEKELPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG----DLS 207
             +F   +    D TPE S  S N+M      +  +L L    +R   G +         
Sbjct: 281 LHQFDKVEIVRID-TPEHSYDSLNEMLNHVEGLLQKLELPYHILRLCGGDMSFTSAICYD 339

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            E    A     +V    +F  +        +
Sbjct: 340 FETWSAAQQRWLEVSSVSNFESYQANRLKCRY 371


>gi|17231468|ref|NP_488016.1| seryl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|30173193|sp|Q8YQ59|SYS_ANASP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|17133110|dbj|BAB75675.1| seryl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 426

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 12/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + + Q   G IE+S P L + D    +G+   + +E  + AD     + 
Sbjct: 175 GAALERALINFMLKMQTAAGYIEVSPPLLVNTDSLTGTGQLPKFAEESFKCAD---DELW 231

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMRSREFLMKDAY 161
             PT E  +T+++R  I +  NLP         FR E         G++R  +F   +  
Sbjct: 232 LIPTAEVPVTNLYRGEILAAENLPIYHCAYTPCFRREAGSYGRDMRGLIRLHQFNKVELV 291

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                         K+  +   I   L L    +   +G +G   +     E  + +   
Sbjct: 292 KVVHPSTSFDEL-EKLVGNAEAILQALKLPYRVINLCTGDLGFGATKTYDLEVWLPSSGK 350

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF     +  F +   
Sbjct: 351 YREISSCSNCFDFQARRADIRFKEAGK 377


>gi|270293497|ref|ZP_06199699.1| histidyl-tRNA synthetase [Bacteroides sp. D20]
 gi|270274964|gb|EFA20824.1| histidyl-tRNA synthetase [Bacteroides sp. D20]
          Length = 453

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 44/128 (34%), Gaps = 5/128 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ I   ++        +   + 
Sbjct: 329 FGMSGVSGVGISFGADRIFDVLNQLDLYPKEAVNGTQLLFINFGEKEA-AFSMNVLTEVR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G       D    ++  Q   A+    P   +VG   +++ KV +K+  TG ++ ++ 
Sbjct: 388 AAGIRAEIFPDAS--KMKKQMGYANSKAIPFVALVGENEMNEGKVTLKNMETGEQKMVTP 445

Query: 432 EEVINYAS 439
           +E+++   
Sbjct: 446 QELVSELK 453


>gi|261417513|ref|YP_003251195.1| seryl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|319765171|ref|YP_004130672.1| seryl-tRNA synthetase [Geobacillus sp. Y412MC52]
 gi|261373970|gb|ACX76713.1| seryl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|317110037|gb|ADU92529.1| seryl-tRNA synthetase [Geobacillus sp. Y412MC52]
          Length = 424

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 9/177 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P L +    + +G+   + +++    
Sbjct: 163 FVFYKGLGARLERALINFMLDIHLDEFGYEEVLPPYLVNRASMIGTGQLPKFAEDVF--- 219

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             + +     PT E  +T++ R  I +  +LP  +      FR E     R   G++R  
Sbjct: 220 HLDSEDYFLIPTAEVPVTNLHRDEILAADDLPIYYAAYSACFRAEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           +F   +   F    +               I  RLGL    +   +G +G   +  +
Sbjct: 280 QFNKVELVKFVKPEDSYDELEKLTRQ-AETILQRLGLPYRVVALCTGDLGFSAAKTY 335


>gi|56708386|ref|YP_170282.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670857|ref|YP_667414.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134302372|ref|YP_001122341.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|187931980|ref|YP_001891965.1| seryl-tRNA synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|224457515|ref|ZP_03665988.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254371010|ref|ZP_04987013.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875208|ref|ZP_05247918.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|67461645|sp|Q5NFB0|SYS_FRATT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|122970886|sp|Q14GR3|SYS_FRAT1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166222727|sp|A4IZ69|SYS_FRATW RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238691511|sp|B2SDH2|SYS_FRATM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|56604878|emb|CAG45963.1| Seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321190|emb|CAL09346.1| Seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134050149|gb|ABO47220.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151569251|gb|EDN34905.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|187712889|gb|ACD31186.1| seryl-tRNA synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254841207|gb|EET19643.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282160006|gb|ADA79397.1| seryl-tRNA synthetase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 426

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 12/204 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            K    ++  + +    + G  E+ VP L + D    +G+   +  ++ +L    D    
Sbjct: 172 AKLHRALSQFMLDLHTEKHGYEELYVPYLVNNDSLYGTGQLPKFAADLFKLE--GDFEYS 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVPITNLVRDEILDTETLPRYYTAHTPCFRSEAGSYGRDTKGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
               T +  + S   +     ++  +L L    M+  +G +G         E  + +   
Sbjct: 290 HI-TTADKGEESLELLTSHAEKVLQKLNLPYRVMKLCTGDMGFSAKKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++       DF          +
Sbjct: 349 YREISSCSWCGDFQARRMKARHKN 372


>gi|160888713|ref|ZP_02069716.1| hypothetical protein BACUNI_01131 [Bacteroides uniformis ATCC 8492]
 gi|317479542|ref|ZP_07938671.1| histidyl-tRNA synthetase [Bacteroides sp. 4_1_36]
 gi|156861612|gb|EDO55043.1| hypothetical protein BACUNI_01131 [Bacteroides uniformis ATCC 8492]
 gi|316904300|gb|EFV26125.1| histidyl-tRNA synthetase [Bacteroides sp. 4_1_36]
          Length = 453

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 44/128 (34%), Gaps = 5/128 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ I   ++        +   + 
Sbjct: 329 FGMSGVSGVGISFGADRIFDVLNQLDLYPKEAVNGTQLLFINFGEKEA-AFSMNVLTEVR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G       D    ++  Q   A+    P   +VG   +++ KV +K+  TG ++ ++ 
Sbjct: 388 AAGIRAEIFPDAS--KMKKQMGYANSKAIPFVALVGENEMNEGKVTLKNMETGEQKMVTP 445

Query: 432 EEVINYAS 439
           +E+++   
Sbjct: 446 QELVSELK 453


>gi|254374079|ref|ZP_04989561.1| seryl-tRNA synthetase [Francisella novicida GA99-3548]
 gi|151571799|gb|EDN37453.1| seryl-tRNA synthetase [Francisella novicida GA99-3548]
          Length = 426

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 12/204 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            K    ++  + +    + G  E+ VP L + D    +G+   +  ++ +L    D    
Sbjct: 172 AKLHRALSQFMLDLHTEKHGYEELYVPYLVNNDSLYGTGQLPKFAADLFKLE--GDFEYS 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVPITNLVRDEILDTETLPRYYTAHTPCFRSEAGSYGRDTKGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
               T +  + S   +     ++  +L L    M+  +G +G         E  + +   
Sbjct: 290 HI-TTADKGEESLELLTSHAEKVLQKLNLPYRVMKLCTGDMGFSAKKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++       DF          +
Sbjct: 349 YREISSCSWCGDFQARRMKARHKN 372


>gi|207744374|ref|YP_002260766.1| prolyl-trna synthetase (partial sequence ( central part) protein
           [Ralstonia solanacearum IPO1609]
 gi|206595779|emb|CAQ62706.1| prolyl-trna synthetase (partial sequence ( central part) protein
           [Ralstonia solanacearum IPO1609]
          Length = 328

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 255 PYAATSDVHNEKLFDSLPENK--RVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
           P A  +D+ N    D  P+ K      RGIEVGH+F  GT+YS  MSATF   +GK   +
Sbjct: 236 PEAEVADLRNVVEGDPSPDGKGSLAICRGIEVGHVFMLGTRYSESMSATFLDENGKTQPM 295

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWP 341
            MG YGIG  R++ A IE ++D +GIIWP
Sbjct: 296 VMGCYGIGITRILGAAIEQNYDARGIIWP 324



 Score = 60.9 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 52/131 (39%), Positives = 67/131 (51%), Gaps = 5/131 (3%)

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
            G+MR REF MKDAYSFD   EG K SY KMF +Y RIF R GL    + A++G IGG  
Sbjct: 1   MGIMRGREFTMKDAYSFDRDVEGMKVSYQKMFDAYTRIFQRFGLAFRAVAADNGAIGGSG 60

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA----PYAATSDV 262
           SHEF V+A+TGE  +       D+    E  +     +  S   +  A    P  A  + 
Sbjct: 61  SHEFHVIAETGEDAIVY-SPESDYAANIEAAEALVPAAPRSPAAEPLAKTPTPGRAKCEA 119

Query: 263 HNEKLFDSLPE 273
             E+L  +L  
Sbjct: 120 VAEQLGIALQR 130


>gi|254372616|ref|ZP_04988105.1| hypothetical protein FTCG_00180 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570343|gb|EDN35997.1| hypothetical protein FTCG_00180 [Francisella novicida GA99-3549]
          Length = 262

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 69/204 (33%), Gaps = 12/204 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            K    ++  + +    + G  E+ VP L + D    +G+   +  ++ +L    D    
Sbjct: 8   AKLHRALSQFMLDLHTEKHGYEELYVPYLVNNDSLYGTGQLPKFAADLFKLE--GDFEYS 65

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +  
Sbjct: 66  LIPTAEVPITNLVRDEILDTETLPRYYTAHTPCFRSEAGSYGRDTKGMIRQHQFEKVELV 125

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                 +  + S   +     ++  +L L    M+  +G +G         E  + +   
Sbjct: 126 HITAADK-GEESLELLTSHAEKVLQKLNLPYRVMKLCTGDMGFSAKKTYDLEVWLPSQNT 184

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++       DF          +
Sbjct: 185 YREISSCSWCGDFQARRMKARHKN 208


>gi|172056058|ref|YP_001812518.1| seryl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
 gi|229559948|sp|B1YGC4|SYS_EXIS2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|171988579|gb|ACB59501.1| seryl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
          Length = 425

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 71/211 (33%), Gaps = 13/211 (6%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRY 86
           R G +         +   G +    +   + +  Q++ G  E+  P + + D    +G+ 
Sbjct: 154 RAGKV--TGSRFVFYRGAGARLERALINFMMDLHQDKNGYTEILPPLMVNRDSMTGTGQL 211

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
             + ++  ++ D N       PT E  +T++ R  I S   LP  +      FR E    
Sbjct: 212 PKFEEDAFKVEDTN---YFLVPTAEVPVTNMHRDEILSADQLPIGYAAYSQCFRSEAGSA 268

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSK--HSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            R   G++R  +F   +   F    E  +            L++            A+ G
Sbjct: 269 GRDTRGLIRQHQFNKVELVRFVKPEESYEQLELLTGQAEEVLKLLKLPYQVLSMCTADLG 328

Query: 201 PIGGDLSH-EFIVLADTGETQVFCSKDFMDF 230
                    E  + +     ++    +F DF
Sbjct: 329 FTAAKKYDIEVWMPSQGVYREISSCSNFEDF 359


>gi|288925843|ref|ZP_06419774.1| serine--tRNA ligase [Prevotella buccae D17]
 gi|288337498|gb|EFC75853.1| serine--tRNA ligase [Prevotella buccae D17]
          Length = 429

 Score = 63.6 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 71/212 (33%), Gaps = 12/212 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +L    +    + A   EE  + G +E+  P + +      +G+      +M  
Sbjct: 164 GAGFPVYLGKMARFQRALEAFFLEEARKAGYLEVQPPFVVNQASGYGTGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+IFR  I   + LP         FR E     +   G+ R
Sbjct: 223 --HANLDDLYLIPTAEVPVTNIFRDEILDEKELPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG----DLS 207
             +F   +    D TPE S  S N+M      +  +L L    +R   G +         
Sbjct: 281 LHQFDKVEIVRID-TPEHSYDSLNEMLNHVEGLLQKLELPYHILRLCGGDMSFTSAICYD 339

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            E    A     +V    +F  +        +
Sbjct: 340 FETWSAAQQRWLEVSSVSNFESYQANRLKCRY 371


>gi|78224711|ref|YP_386458.1| seryl-tRNA synthetase [Geobacter metallireducens GS-15]
 gi|123570656|sp|Q39PU1|SYS_GEOMG RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78195966|gb|ABB33733.1| seryl-tRNA synthetase [Geobacter metallireducens GS-15]
          Length = 423

 Score = 63.6 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 74/205 (36%), Gaps = 13/205 (6%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +    + G  E   P + + +    +G+   + +++      +    
Sbjct: 168 GARLERALINFMLDLHTEKHGYEETLPPFMVNRESMTGTGQLPKFEEDLF---HLDGTDY 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I R  I    +LP ++      FR E     +   G++R  +F   + 
Sbjct: 225 YLIPTAEVPVTNIHRGEILKGSDLPLSYTAYTPCFRKEAGSYGKDVRGLIRQHQFNKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F   P  S     ++  +   +  +LGL    +   +G +G   +     E  + A  
Sbjct: 285 VKF-THPSTSYAELERLLANAEEVLRQLGLHYRVVELCTGDMGFSAAKTYDIEVWLPAQD 343

Query: 217 GETQVFCSKDFMDFPIPSENTDFDD 241
              ++    +F DF     +  F +
Sbjct: 344 TYREISSCSNFEDFQARRASIRFRE 368


>gi|149200692|ref|ZP_01877683.1| seryl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
 gi|149136219|gb|EDM24681.1| seryl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
          Length = 260

 Score = 63.6 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 52/167 (31%), Gaps = 13/167 (7%)

Query: 14  NPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            P+        L +    R   I     G Y W   G +    +     ++    G  E 
Sbjct: 94  APQAHWDLGQNLDILDLPRAAKI--SGSGFYLWKGAGARLERALINFFLDQNTENGYKEA 151

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
            VP + +      +G+   + +E+       +  +   PT E  +T+I    I   + LP
Sbjct: 152 WVPFVVNPKAMTGTGQLPKFAEEIY---HAPEDNLYLVPTAEVPVTNIHADEILDAKELP 208

Query: 130 FTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLTPEGSKH 172
             +      FR E         G++R  +F   +   F         
Sbjct: 209 IAYTAYTPCFRREAGAAGKDSRGILRVHQFSKVEMVKFVEPSTSYTE 255


>gi|294496887|ref|YP_003560587.1| seryl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|295702254|ref|YP_003595329.1| seryl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294346824|gb|ADE67153.1| seryl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294799913|gb|ADF36979.1| seryl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 425

 Score = 63.6 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 8/139 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P + +      +G+   + ++  ++ 
Sbjct: 163 FVFYKGLGARLERALINFMMDLHMDEHGYEEILPPYMVNRTSMTGTGQLPKFEEDAFKIK 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           +         PT E  +T++ R  I S   LP  +      FR E     R   G++R  
Sbjct: 223 EE---DYFLIPTAEVPVTNLHRDEILSGDQLPIAYTAYSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKH 172
           +F   +   F    +    
Sbjct: 280 QFNKVELVRFVKPEDSYDE 298


>gi|114051578|ref|NP_001039531.1| histidyl-tRNA synthetase, cytoplasmic [Bos taurus]
 gi|110287977|sp|Q2KI84|SYHC_BOVIN RecName: Full=Histidyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|86826556|gb|AAI12732.1| Histidyl-tRNA synthetase [Bos taurus]
 gi|296485285|gb|DAA27400.1| histidyl-tRNA synthetase [Bos taurus]
          Length = 509

 Score = 63.6 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 61/495 (12%), Positives = 132/495 (26%), Gaps = 66/495 (13%)

Query: 11  LQENPRDAEIA----SHKLMLRTG---------MIHQHSKGIYSWLPLGQKALDNVNAII 57
           L++    AE      +  L L+            + +  KG   + P      + V  +I
Sbjct: 21  LKQQKASAEQIEEEVAKLLKLKAQLGPDEGKPKFVLKTPKGTRDYSPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +    +G+Y    K +  L D+  + +             
Sbjct: 81  ISCFKRHGAEVIDTPVFELKETL--TGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS--FDLTPEGSKHSYN 175
                 +   L         K      P     R REF   D                  
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMLPDAECLK 193

Query: 176 KMFVSY--LRIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
            M      L+I   L   +     +    I G    +F  +  + +     S + +   +
Sbjct: 194 IMCEILSSLQIGDFLVKVNDRRILDGMFAICGVPDSKFRTICSSVDKLDKVSWEEVKNEM 253

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDV-------HNEKLFDSLPENKRVSARGIEVG 285
             E     ++        Q     +    +        N++  + L + K +       G
Sbjct: 254 VGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFG 313

Query: 286 HIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIE--SSHDGKGIIWPDS 343
                    SL     +      +  +       G   +    +     +DG   ++   
Sbjct: 314 IADKISFDLSLARGLDYYTGVIYEAVLLQPPARAGEEPLGVGSVAAGGRYDGLVGMFDPK 373

Query: 344 VAPFKISLINIKAHD---------QVCRDACE--------------------KIYARLSK 374
                   ++I             +   +                       K+ + L  
Sbjct: 374 GRKVPCVGLSIGVERIFSIVEQRLEALEEKVRTTETQVLVASAQKKLLEERLKLISELWD 433

Query: 375 VGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G           ++ +Q    +  G PL  I+G + + D  ++++   +    D+  E+
Sbjct: 434 AGIKAELLYKKNPKLLNQLQYCEETGIPLVAIIGEQELKDGVIKLRSVASREEVDVRRED 493

Query: 434 VINYASHRFSNNRPV 448
           ++     R   ++P+
Sbjct: 494 LVEEIKRR--TSQPL 506


>gi|89256780|ref|YP_514142.1| seryl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115315171|ref|YP_763894.1| seryl-tRNA synthetase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502942|ref|YP_001429007.1| seryl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010731|ref|ZP_02275662.1| seryl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368068|ref|ZP_04984088.1| seryl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|122324830|sp|Q0BKX7|SYS_FRATO RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|122500428|sp|Q2A2B0|SYS_FRATH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166221439|sp|A7NDJ8|SYS_FRATF RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|89144611|emb|CAJ79930.1| Seryl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115130070|gb|ABI83257.1| serine--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253878|gb|EBA52972.1| seryl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|156253545|gb|ABU62051.1| seryl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 426

 Score = 63.6 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 12/204 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            K    ++  + +    + G  E+ VP L + D    +G+   +   + +L    D    
Sbjct: 172 AKLHRALSQFMLDLHTEKHGYEELYVPYLVNNDSLYGTGQLPKFAANLFKLE--GDFEYS 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVPITNLVRDEILDTETLPRYYTAHTPCFRSEAGSYGRDTKGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
               T +  + S   +     ++  +L L    M+  +G +G         E  + +   
Sbjct: 290 HI-TTADKGEESLELLTSHAEKVLQKLNLPYRVMKLCTGDMGFSAKKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++       DF          +
Sbjct: 349 YREISSCSWCGDFQARRMKARHKN 372


>gi|291513956|emb|CBK63166.1| histidyl-tRNA synthetase [Alistipes shahii WAL 8301]
          Length = 448

 Score = 63.6 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 59/444 (13%), Positives = 114/444 (25%), Gaps = 54/444 (12%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSAD-------------LWVE 82
           P G +            +   IR      G   +  P++++               L+  
Sbjct: 7   PKGTRDFSPAEMMRRQYIFDTIRRVFRAYGFAPLETPSMENLSTLLGKYGDEGDKLLFKI 66

Query: 83  --SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFR 140
             SG Y +   +    +                       H       PF  YQIQ  +R
Sbjct: 67  LNSGDYAAGLSDEEVRSASKICEKGLRYDLTVPFARYVVQHQ-GELTFPFKRYQIQPVWR 125

Query: 141 DELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
            +   +    R REF   D           +    ++     +         +  R    
Sbjct: 126 ADRPQKG---RYREFYQCDVDVIGTRSLLCEVELVEIVERVFKALGIRVALKMNNRKILF 182

Query: 201 PI-----GGDLSHEFIVLADTGE-----------TQVFCSKDFMDFPIPSENTDFDDIIS 244
            I       D   +  +  D  E            +    ++ +D   P      D+   
Sbjct: 183 GIAEAIGHADKMMDITIAIDKLEKIGLDNVKAELMERGLDREAVDKLQPILELSGDNAQK 242

Query: 245 LNSIVEQWTAPY-AATSDVHNEKLFDSLPENKRVSARGIE----VGHIFYFGTKYSLPMS 299
           LN + E               E +F  +          ++     G  +Y G  + +   
Sbjct: 243 LNQLKEVLAVSETGMKGIEEMETVFGYVGRLGIGLTVELDLSLARGLNYYTGAIFEVKAL 302

Query: 300 ATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW-----PDSVAPFKISLINI 354
               G+          +   G   +    I    D    +                ++ +
Sbjct: 303 DFAIGSICGGGRYDDLTGIFGMPNMSGVGISFGADRIYDVMTGLSLFPEEVNSSTRVLFV 362

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
               +    A   +  +L              ++  Q   A+  G P  VIVGS+ +   
Sbjct: 363 NLGAEE-EAAVLPLLRQLRGREIAAEIYPEAGKMKKQMEYANRRGIPYVVIVGSQELEAG 421

Query: 415 KVEIKHRLTGIREDMSLEEVINYA 438
              +K   TG +  +SL+++    
Sbjct: 422 AATVKDMRTGEQRQVSLDKLATEI 445


>gi|188518695|ref|ZP_03004122.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188997689|gb|EDU66786.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
          Length = 418

 Score = 63.6 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 12/213 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G +    +     +   + G  E+  P + + +  + SG    +  ++ +L +
Sbjct: 164 FIIYTNFGARLYRALQQFCLDMNVKAGFNEIWAPVIVNQESLIGSGNLPKFVDDLFKLEN 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N       PT E  +T++ R+ I    +LP  +  +   FR E     R   GV+R  +
Sbjct: 224 SN---YYLSPTAEVQLTNLHRNEILKASDLPLYYTALTPCFRSEAGSAGRDVRGVIRQHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +        +  K   +        I   L L    +   +G +G   +     E 
Sbjct: 281 FHKVELVKLCKPEDSFKELESMTRQ-AESILEALELPYRRIALCTGDLGFSSAKTYDLEV 339

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            + +     ++    +  +F        + + +
Sbjct: 340 WLPSYNAYKEISSCSNCTNFQARRAKIRYKETV 372


>gi|185178824|ref|ZP_02964612.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024432|ref|ZP_02997087.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|209554387|ref|YP_002284526.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225551523|ref|ZP_03772469.1| serine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|238065110|sp|B5ZAT6|SYS_UREU1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|184209459|gb|EDU06502.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188018723|gb|EDU56763.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|209541888|gb|ACI60117.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225379338|gb|EEH01703.1| serine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 418

 Score = 63.6 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 12/213 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G +    +     +   + G  E+  P + + +  + SG    +  ++ +L +
Sbjct: 164 FIIYTNFGARLYRALQQFCLDMNVKAGFNEIWAPVIVNQESLIGSGNLPKFVDDLFKLEN 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N       PT E  +T++ R+ I    +LP  +  +   FR E     R   GV+R  +
Sbjct: 224 SN---YYLSPTAEVQLTNLHRNEILKASDLPLYYTALTPCFRSEAGSAGRDVRGVIRQHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +        +  K   +        I   L L    +   +G +G   +     E 
Sbjct: 281 FHKVELVKLCKPEDSFKELESMTRQ-AESILEALELPYRRIALCTGDLGFSSAKTYDLEV 339

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            + +     ++    +  +F        + + +
Sbjct: 340 WLPSYNAYKEISSCSNCTNFQARRAKIRYKETV 372


>gi|311894343|dbj|BAJ26751.1| putative seryl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 420

 Score = 63.6 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 66/206 (32%), Gaps = 13/206 (6%)

Query: 14  NPRDAEIASH---KLML-RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIE 68
            PRD          L L R G               G +    + + + +      G +E
Sbjct: 127 APRDHVALGAGSGILDLERAG--RVSGARFAVLRGAGARLERALASFLLDLHTREHGYVE 184

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
           MSVP L + +    +G+   +  ++       ++ +   PT E  + ++FR    S   L
Sbjct: 185 MSVPHLVTRESMTATGQLPKFADDLF-GTRAAERELFLIPTAEVPLVNLFRGETLSSAAL 243

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P         FR E     R   GV+R  EF   +        +        +       
Sbjct: 244 PLAVTAHTACFRSEAGSYGRDTRGVIRLHEFAKVELVRLCAAQDARHEH-EVLLGHAEEA 302

Query: 185 FHRLGLKSIPMRAESGPIGGDLSHEF 210
             RLGL    +   +G +G      +
Sbjct: 303 LRRLGLHYRVVELRTGDLGFSARRTY 328


>gi|225550730|ref|ZP_03771679.1| serine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225379884|gb|EEH02246.1| serine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 418

 Score = 63.6 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 12/213 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G +    +     +   + G  E+  P + + +  + SG    +  ++ +L +
Sbjct: 164 FIIYTNFGARLYRALQQFCLDMNVKAGFNEIWAPVIVNQESLIGSGNLPKFADDLFKLEN 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N       PT E  +T++ R+ I    +LP  +  +   FR E     R   GV+R  +
Sbjct: 224 SN---YYLSPTAEVQLTNLHRNEILKASDLPLYYTALTPCFRSEAGSAGRDVRGVIRQHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +        +  K   +        I   L L    +   +G +G   +     E 
Sbjct: 281 FHKVELVKLCKPEDSFKELESMTRQ-AESILEALELPYRRIALCTGDLGFSSAKTYDLEV 339

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            + +     ++    +  +F        + + +
Sbjct: 340 WLPSYNAYKEISSCSNCTNFQARRAKIRYKETV 372


>gi|188524127|ref|ZP_03004200.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867376|ref|ZP_03079380.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273528|ref|ZP_03206064.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|195660003|gb|EDX53383.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660852|gb|EDX54105.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198250048|gb|EDY74828.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
          Length = 418

 Score = 63.6 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 12/213 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G +    +     +   + G  E+  P + + +  + SG    +  ++ +L +
Sbjct: 164 FIIYTNFGARLYRALQQFCLDMNVKAGFNEIWAPVIVNQESLIGSGNLPKFADDLFKLEN 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N       PT E  +T++ R+ I    +LP  +  +   FR E     R   GV+R  +
Sbjct: 224 SN---YYLSPTAEVQLTNLHRNEILKASDLPLYYTALTPCFRSEAGSAGRDVRGVIRQHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +        +  K   +        I   L L    +   +G +G   +     E 
Sbjct: 281 FHKVELVKLCKPEDSFKELESMTRQ-AESILEALELPYRRIALCTGDLGFSSAKTYDLEV 339

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            + +     ++    +  +F        + + +
Sbjct: 340 WLPSYNAYKEISSCSNCTNFQARRAKIRYKETV 372


>gi|171920715|ref|ZP_02931931.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|171903457|gb|EDT49746.1| seryl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
          Length = 418

 Score = 63.6 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 12/213 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G +    +     +   + G  E+  P + + +  + SG    +  ++ +L +
Sbjct: 164 FIIYTNFGARLYRALQQFCLDMNVKAGFNEIWAPVIVNQESLIGSGNLPKFADDLFKLEN 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            N       PT E  +T++ R+ I    +LP  +  +   FR E     R   GV+R  +
Sbjct: 224 SN---YYLSPTAEVQLTNLHRNEILKASDLPLYYTALTPCFRSEAGSAGRDVRGVIRQHQ 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +        +  K   +        I   L L    +   +G +G   +     E 
Sbjct: 281 FHKVELVKLCKPEDSFKELESMTRQ-AESILEALELPYRRIALCTGDLGFSSAKTYDLEV 339

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDII 243
            + +     ++    +  +F        + + +
Sbjct: 340 WLPSYNAYKEISSCSNCTNFQARRAKIRYKETV 372


>gi|87303148|ref|ZP_01085946.1| seryl-tRNA synthetase [Synechococcus sp. WH 5701]
 gi|87282315|gb|EAQ74275.1| seryl-tRNA synthetase [Synechococcus sp. WH 5701]
          Length = 430

 Score = 63.6 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 7/132 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    + + + ++    G  EM  P L ++     SG+   + +E    AD     + 
Sbjct: 177 GARLERALISFMLDQHASRGYREMLPPILVNSASLTASGQLPKFAEESFSCAD---DDLW 233

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T   R  I +   LP  +      FR E     R   G++R  +F   + Y
Sbjct: 234 LTPTAEVPLTSFHRDEILAAEQLPLKYAAYTPCFRREAGSYGRDTRGLIRLHQFNKVELY 293

Query: 162 SFDLTPEGSKHS 173
            F    E     
Sbjct: 294 WFCHPDESEAAH 305


>gi|325181478|emb|CCA15912.1| histidyltRNA synthetase putative [Albugo laibachii Nc14]
          Length = 950

 Score = 63.6 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 58/438 (13%), Positives = 118/438 (26%), Gaps = 48/438 (10%)

Query: 34  QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
           + +KG   +LP   +  + V   IR      G  E++ P  +  +    +G+Y    K +
Sbjct: 498 KIAKGTLDFLPYQMQLREKVLNRIRSVFRAHGGQEIATPVFELKETL--TGKYGEDSKLI 555

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
             LAD+  + +                      +          +      P+    R R
Sbjct: 556 YDLADQGGELLALRYDLTVPFARFMAM-----HSPGNIKRFHIARVYRRDNPQMARGRFR 610

Query: 154 EFLMKDAYS--FDLTPEGSKHSYNKMFVSYLRIFHRLGLK----------------SIPM 195
           EF   D     F  +        +      L+    +G                      
Sbjct: 611 EFFQCDFDIAGFYASMLPDAEVISVGIEVLLQFQTWIGSFKIKLSHRVLLDAILAICGVP 670

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII---SLNSIVEQW 252
            A+   I   +        DT  +++   K                +     L + ++Q 
Sbjct: 671 SAKFRTICSAIDKLDKESWDTVRSEMVDEKGLAPEAADKIAAFVCKVGRPLELLAELKQL 730

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSA------------RGIEV--GHIFYFGTKYSLPM 298
            A   + +     +  ++L E  R               RG++   G I+ F        
Sbjct: 731 QAFQRSEAPTKALEELETLFEYLRAMDVLQHISFDLSLARGLDYYTGLIYEFVLTDPENQ 790

Query: 299 SATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP----DSVAPFKISLINI 354
                 A G+   +       G       +         I+      +    F+ S   +
Sbjct: 791 HVGSIAAGGRYDELVGIFSATGQQIPCVGISIGIERLFSIVQSKAIAEESKKFQSSTQVL 850

Query: 355 KAHDQVC-RDACEKIYARLSKVGCDVFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVS 412
            A    C      +I   L +             +   Q   A     P  +++G   + 
Sbjct: 851 VASATACSMSIKLEICKELWRANIAAQVMQLENPKFTKQLHFALENSIPFMIVIGQDELD 910

Query: 413 DSKVEIKHRLTGIREDMS 430
           + +V++K   +   + +S
Sbjct: 911 NQQVKVKTIASKEEQTVS 928


>gi|134297896|ref|YP_001111392.1| seryl-tRNA synthetase [Desulfotomaculum reducens MI-1]
 gi|172044203|sp|A4J0G4|SYS_DESRM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|134050596|gb|ABO48567.1| seryl-tRNA synthetase [Desulfotomaculum reducens MI-1]
          Length = 424

 Score = 63.6 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 75/208 (36%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  +G +    +   + +      G  E+  P + + D  + +G+   + ++M +L   
Sbjct: 164 FYKGMGARLERALINFMLDLHTREHGYTEIFPPFIVNGDSMLGTGQLPKFAEDMFKLE-- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREF 155
                   PT E  +T+++R  I +   LP         FR E         G++R  +F
Sbjct: 222 -GLNYYLIPTAEVPVTNLYRDEILAEEQLPIYHCAYSACFRAEAGAAGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFI 211
              +   F    E       ++  +  +I   LGL    +   +G +G   +     E  
Sbjct: 281 NKVELVKFSKPEESFDEL-ERLTANAEKILQALGLPYRVVLLSTGDMGFTSAKTYDLEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           + +     ++    +F+DF     N  +
Sbjct: 340 LPSYNAYKEISSCSNFLDFQARRANIKY 367


>gi|227518153|ref|ZP_03948202.1| seryl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|257081307|ref|ZP_05575668.1| seryl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|227074396|gb|EEI12359.1| seryl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|256989337|gb|EEU76639.1| seryl-tRNA synthetase [Enterococcus faecalis E1Sol]
          Length = 423

 Score = 63.6 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 75/212 (35%), Gaps = 13/212 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +      G  EM  P + +      +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERALYNFMLDLHVYEHGYTEMITPYIVNDTAMFGTGQFPKFKEDVFQLQ 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D     +   PT E  +T+ + + I   ++LP  F  +   FR E     R   G++R  
Sbjct: 223 D---TDLTLIPTAEVPLTNYYNNEILDGKDLPIYFTALSPSFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F       +        +   I  +LGL    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFSDAEHSYEELEKMT-NNAEEILQKLGLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             + A     ++    +  DF        + D
Sbjct: 339 VWIPAQETYREISSCSNCEDFQARRAMIRYRD 370


>gi|224025678|ref|ZP_03644044.1| hypothetical protein BACCOPRO_02418 [Bacteroides coprophilus DSM
           18228]
 gi|224018914|gb|EEF76912.1| hypothetical protein BACCOPRO_02418 [Bacteroides coprophilus DSM
           18228]
          Length = 454

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 60/454 (13%), Positives = 127/454 (27%), Gaps = 54/454 (11%)

Query: 37  KGIY----SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-------------L 79
            GI      + P+     + +   IRE     G  ++  P++++               L
Sbjct: 5   PGIPKGTRDFSPVEMAKRNYIFDTIREVFYLYGFQQIETPSMENLSTLMGKYGEEGDKLL 64

Query: 80  WVESGRYDSY-----GKEMLRLADRNDKAMIYGPTHEEVMTDIFRS--HIKSYRNLPFTF 132
           +      D +      + + R A R            ++     R     +     PF  
Sbjct: 65  FKIQNSGDYFSGLTDEELLSRNAARLASKFCEKGLRYDLTVPFARYVVMHRDEITFPFKR 124

Query: 133 YQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRL---- 188
           +QIQ  +R +   +    R REF   DA         ++    +M  +    F       
Sbjct: 125 FQIQPVWRADRPQKG---RYREFYQCDADVVGSNSLLNEVELVQMIDTVFNRFGIRVSIK 181

Query: 189 --------GLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN---- 236
                   G+  I   A+          +   +          SK   +  I        
Sbjct: 182 VNNRKILTGIAEIIGEADKIVDITVAIDKLDKIGLDNVNAELASKGISEEAIAKLQPIIQ 241

Query: 237 ---TDFDDIISLNSIVEQ-WTAPYAATS-DVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
              T+ + + +L  ++    T        +     +     +++      +  G  +Y G
Sbjct: 242 LKGTNAEKLATLKQVLAGSETGLKGVEESEFILHAVEGLHVKSEVELDLTLARGLNYYTG 301

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI-----IWPDSVAP 346
             + +       G+          +   G   +    I    D               A 
Sbjct: 302 AIFEVKALDVQIGSISGGGRYDNLTGVFGMDGMSGVGISFGADRIYDVLNQLDLYPKEAV 361

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIV 406
               L+ +   +         +  +  + G          ++  Q   A+    P   +V
Sbjct: 362 NGTQLLFVNFGEAEA-AYVLPVLMQAREAGIRAEIYPDSAKMKKQMGYANSKNIPFVALV 420

Query: 407 GSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           G   +++ KV +K+  TG +  ++ EE+I     
Sbjct: 421 GETEMNEGKVTLKNMTTGEQTLVTPEELIAAIRK 454


>gi|255007813|ref|ZP_05279939.1| seryl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313145518|ref|ZP_07807711.1| seryl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313134285|gb|EFR51645.1| seryl-tRNA synthetase [Bacteroides fragilis 3_1_12]
          Length = 424

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E  ++G  E+  PT+ +A     +G+      +M  
Sbjct: 164 GAGFPVYKGKGAQLQRALINFFLDEARKSGYTEIMPPTVVNAASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CE---VDDLYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL--SHE 209
             EF   +    D      +            +  +L L    +R   G +        +
Sbjct: 281 LHEFSKVELVRIDKPEHSRQSHQEM-LDHVEGLLQKLELPYRILRLCGGDMSFTAALCFD 339

Query: 210 FIVLADTGETQV 221
           F V ++  +  +
Sbjct: 340 FEVYSEAQKRWL 351


>gi|62766469|gb|AAX99363.1| histidyl-tRNA synthetase [Homo sapiens]
          Length = 509

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 62/488 (12%), Positives = 135/488 (27%), Gaps = 64/488 (13%)

Query: 11  LQENPRDAEIA----SHKLMLRTG---------MIHQHSKGIYSWLPLGQKALDNVNAII 57
           L++    AE+     +  L L+            + +  KG   + P      + V  +I
Sbjct: 21  LKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKGTRDYSPRQMAVREKVFDVI 80

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  +  +  G+Y    K +  L D+  + +             
Sbjct: 81  IRCFKRHGAEVIDTPVFELKETLM--GKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 136

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DLTPEGSKHSYNK 176
                 +   L         K      P     R REF   D     +  P        K
Sbjct: 137 ---RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLK 193

Query: 177 MFVSYL---RIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPI 232
           +    L   +I   L   +     +    I G    +F  +  + +     S + +   +
Sbjct: 194 IMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEM 253

Query: 233 PSENTDFDDIISLNSIVEQWTAPYAATSDV-------HNEKLFDSLPENKRVSAR----G 281
             E     ++        Q     +    +        N++  + L + K +       G
Sbjct: 254 VGEKGLAPEVADRIGDYVQQHGGVSLAEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFG 313

Query: 282 IEVGHIFYFGTKYSLPMSATFKGAD---------------------GKDHYVQMGSYGIG 320
           I+    F       L                               G  +   +G +   
Sbjct: 314 IDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPK 373

Query: 321 AMRVVAAVIESSHDGKGIIW------PDSVAPFKISLINIKAHDQVCRDACEKIYARLSK 374
             +V    +    +    I        +       + + + +  +   +   K+ + L  
Sbjct: 374 GRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWD 433

Query: 375 VGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEE 433
            G           ++ +Q    +  G PL  I+G + + D  ++++   +    D+  E+
Sbjct: 434 AGIKAELLYKKNPKLLNQLQYCEEAGTPLVAIIGEQELKDGVIKLRSVTSREEVDVRRED 493

Query: 434 VINYASHR 441
           ++     R
Sbjct: 494 LVEEIKRR 501


>gi|307594682|ref|YP_003900999.1| histidyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
 gi|307549883|gb|ADN49948.1| histidyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
          Length = 433

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/419 (10%), Positives = 112/419 (26%), Gaps = 40/419 (9%)

Query: 42  WLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRND 101
           + P+  +  D +  +        G + +  P L+  ++       +    E+    D+  
Sbjct: 22  YYPM-LQVFDKLARVA----ESFGYLRVETPALEHYEILKAK-AGEDVINEIYYFKDKAG 75

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY 161
           + +         +  +    +   + + + +     ++     P+ G  R  EF      
Sbjct: 76  REVGLRFDMTVPVARVVSYRVDVPKPIRWYYITKVWRY---DEPQHGRYR--EFHQFGIE 130

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQV 221
               +   +      + V  L+  +   +    +R     I   L  +  +  +   + +
Sbjct: 131 FIGSSSVRADAEVLTVGVEALKALN---IGDFRVRINDRRIIDQLLSKLGISNELKPSVL 187

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIV--------------------------EQWTAP 255
                    P         D+   N                             +++   
Sbjct: 188 RVMDKRGKVPDDEILRMLRDLGLSNDTAQEVLRLANTSEGIDKAIDSFKEFGVSDEFIKY 247

Query: 256 YAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMG 315
           Y+   D+ +     +  +      RG++      F         +   G    +      
Sbjct: 248 YSELIDLLDMYGVRNYMDLDMGIVRGLDYYTGIVFEMYVPDYKLSVGGGGRYDNLIEIYS 307

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
              + A      +       +         P     + +  +D+       ++ A L   
Sbjct: 308 GKPMPASGFAMGIERLLEVLEQRGSIKRAFPQIDYYVYVLGNDRNYLALGYRLAANLRAR 367

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G  V  D   + + S    A  +     +IVG K VS   V ++        D+ + E 
Sbjct: 368 GNKVIVDTGEKSLRSALEYASKVNVRYFIIVGPKEVSQGVVRVRDMSNWSERDVPITEF 426


>gi|254369671|ref|ZP_04985681.1| serine-tRNA ligase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122630|gb|EDO66759.1| serine-tRNA ligase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 426

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 12/204 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            K    ++  + +    + G  E+ VP L + D    +G+   +   + +L    D    
Sbjct: 172 AKLHRALSQFMLDLHTEKHGYEELYVPYLVNNDSLYGTGQLPKFAANLFKLE--GDFEYS 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVPITNLVRDEILDTETLPRYYTAHTPCFRSEAGSYGRDTKGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
               T +  + S   +     ++  +L L    M+  +G +G         E  + +   
Sbjct: 290 HI-TTADKGEESLELLTSHAEKVLQKLNLPYRVMKLCTGDMGFSAKKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++       DF          +
Sbjct: 349 YREISSCSWCGDFQARRMKARHKN 372


>gi|54293502|ref|YP_125917.1| seryl-tRNA synthetase [Legionella pneumophila str. Lens]
 gi|67461679|sp|Q5WZ31|SYS_LEGPL RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|53753334|emb|CAH14781.1| hypothetical protein lpl0551 [Legionella pneumophila str. Lens]
          Length = 426

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 8/161 (4%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +    + G  E+ VP + +AD  + +G+   +  ++ +L    D    
Sbjct: 170 ARLHRALIQFMLDIHIQQHGYQEIYVPYIVNADSLLGTGQLPKFEADLFKLT--GDNGYY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+  R  I S   LP  +      FR E     +   G++R  +F   +  
Sbjct: 228 LTSTSEIPVTNTVREMILSAEQLPIRYVCHSPCFRSEAGSYGKDTKGMIRQHQFEKVELV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
                 +       ++      I  RL L    +   +G I
Sbjct: 288 WITKPEDSYNAL-EQLTQHAEVILQRLKLPYRVVALCTGDI 327


>gi|188997109|ref|YP_001931360.1| seryl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|229560100|sp|B2VA33|SYS_SULSY RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|188932176|gb|ACD66806.1| seryl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 417

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 13/212 (6%)

Query: 47  QKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +   +  G  E+  P L   ++   +G+   +  ++ ++ D     + 
Sbjct: 172 ARLERALINFMLDVHTKQHGYTEVWTPALVKPEILFGTGQLPKFKDDLYKIEDE---DLY 228

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++    I +  +LP  +      FR E     +   G++R  +F   +  
Sbjct: 229 LIPTAEVTLTNLHADEILNEEDLPKYYTAYTPCFRKEAGSHGKDVKGILRQHQFDKVELV 288

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                 +       K+     +I   L +    +   +G +G   +     E  + +   
Sbjct: 289 KIVKPEDSYNEL-EKLVNEAEKILQLLEIPYRVVLLCTGDMGFSAAKTYDIEVWIPSQNR 347

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             ++    +  DF        + D    N  V
Sbjct: 348 YREISSCSNTEDFQARRAKIRYKDKDGKNHYV 379


>gi|256826794|ref|YP_003150753.1| seryl-tRNA synthetase [Cryptobacterium curtum DSM 15641]
 gi|256582937|gb|ACU94071.1| seryl-tRNA synthetase [Cryptobacterium curtum DSM 15641]
          Length = 427

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 70/210 (33%), Gaps = 12/210 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    +   + +     G  E   P L + +    +G+   + +++ +  D    ++
Sbjct: 170 LGARLERALINFMADTHTSRGFKEWWCPALVNRETMTGTGQLPKFEEDLFKTKDE---SL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I    +     LP  +      FR+E     R   G++R  +F   + 
Sbjct: 227 YLIPTAEVTLTNIHAGEVLDAAELPLRYTAFTPCFREEAGSAGRDTRGLIRLHQFDKVEM 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F    E      +        I  +L L    +   +G +G   +     E  + +  
Sbjct: 287 VKFAKPEEAYDELESMTAE-AEYILQKLELPYRVISLCTGDLGFSAAKTYDLEVWLPSYD 345

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLN 246
              ++       DF     +  + D  S  
Sbjct: 346 AYKEISSCSCCGDFQARRADIKYRDAESFK 375


>gi|289549035|ref|YP_003474023.1| seryl-tRNA synthetase [Thermocrinis albus DSM 14484]
 gi|289182652|gb|ADC89896.1| seryl-tRNA synthetase [Thermocrinis albus DSM 14484]
          Length = 424

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 68/213 (31%), Gaps = 12/213 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
            G K    +   + +     G  E+  P L   ++ V +G+   + +++ +        +
Sbjct: 170 WGAKLERALINFMLDLHTSRGYTEVMTPHLVKPEILVGTGQLPKFEEDLYKCE---RDQL 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMRSREFLMKDA 160
              PT E  +T++FR  I    +LP         +R E         G++R  +F   + 
Sbjct: 227 YLIPTAEVTLTNLFREEILREEDLPIYLTAYTPCYRREAGAYGKDVRGIIRQHQFDKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADT 216
                  +  K    ++      +   L L    +   +G +G         E    +  
Sbjct: 287 VKIVKPEDSYKEL-ERLLEDAEEVLRLLQLPYRVVELCTGDLGFSSAKTYDIEVWFPSQG 345

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
              +V    +  DF     N  + D       V
Sbjct: 346 RYREVSSCSNCEDFQARRMNLRYRDANGRLRFV 378


>gi|148653337|ref|YP_001280430.1| seryl-tRNA synthetase [Psychrobacter sp. PRwf-1]
 gi|172048529|sp|A5WFN9|SYS_PSYWF RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|148572421|gb|ABQ94480.1| seryl-tRNA synthetase [Psychrobacter sp. PRwf-1]
          Length = 428

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 13/207 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-- 103
            +    +   +      + G  E  VP + ++D    +G+   + +++ +L +  +    
Sbjct: 170 AQLHRALIQFMLNTHTVKYGYTECYVPYIVNSDSLEGTGQLPKFEEDLFKLTNHTNNEAM 229

Query: 104 -MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                PT E  MT++ R        LP  F      FR E     R   G++R  +F   
Sbjct: 230 GFYLIPTAEVPMTNLVRGERLDASELPLKFTAHTPCFRSEAGSHGRDTRGLIRQHQFEKV 289

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +      T   S     +M      I  +L L    ++  +G +G         E  V +
Sbjct: 290 EMV-NIATAAQSDELLEQMTGQAEYILQQLQLPYRVVKLCTGDMGFSALRTYDIEVWVPS 348

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDD 241
                ++    +  DF      T   +
Sbjct: 349 QDTYREISSCSNCGDFQARRMGTRVKE 375


>gi|71993693|ref|NP_001023374.1| Histidyl tRNA Synthetase family member (hrs-1) [Caenorhabditis
           elegans]
 gi|55584143|sp|P34183|SYH_CAEEL RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|30145709|emb|CAD89746.1| C. elegans protein T11G6.1b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 521

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           IE            ++   +  +    A   + RD  +K+   L   G          + 
Sbjct: 405 IERLFAIMEARQKVAIRTTQTEVYVASAQKNLVRDR-KKLVKMLRSAGIKTEM---ALKA 460

Query: 389 GSQ----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             +    F  A+    PL +++G + + D  V++++ +T   + + L+++I       +
Sbjct: 461 NPKLLTQFQYAEERRIPLAIVIGEQELKDGVVKLRNVVTRDEQTIKLDQLITAVRDTLA 519


>gi|120435468|ref|YP_861154.1| histidyl-tRNA synthetase [Gramella forsetii KT0803]
 gi|166980048|sp|A0M0E2|SYH_GRAFK RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|117577618|emb|CAL66087.1| histidyl-tRNA synthetase [Gramella forsetii KT0803]
          Length = 456

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 63/450 (14%), Positives = 125/450 (27%), Gaps = 55/450 (12%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYG 90
           P G +          + +   I+ E    G   +  P+ +++         E  R     
Sbjct: 8   PKGTRDFSPEEVAKRNYIFNTIQTEFKGFGFQPIETPSFENSSTLMGKYGDEGDRLIFKI 67

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVM 150
                   + DK  +      ++ + I    ++    +PF  Y +Q +   E   +   +
Sbjct: 68  LNSGDFLKKADKDALANSDSLKLTSSISEKALRYDLTVPFARYVVQHQNEIEFPFKRYQI 127

Query: 151 ------------RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR-- 196
                       R REF   DA          +  + +++ +        G+        
Sbjct: 128 QPVWRADRPQKGRFREFFQCDADVVGSNSLWQEVEFVQLYDAVFNKLGLEGVTIKINNRK 187

Query: 197 ----AESGPIGGDLSHEFIVLADT----GETQVFCSKDFMDFPIPSENT----------D 238
                       D   +F V  D     GE  V            + N            
Sbjct: 188 VLSGFAEVIGEQDKLIDFTVALDKLDKIGEEGVKKEMREKGISEEALNKIQPIFNLNGNF 247

Query: 239 FDDIISLNSIVEQWTAPYAATSD---VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYS 295
            + I  L +I+E          +   + N      L   K      +  G  +Y G  + 
Sbjct: 248 AEKIEGLKTILEGSETGQKGIEELQFIQNAIEEMPLSVAKLDLDVTLARGLNYYTGAIFE 307

Query: 296 LPMSATFK-GADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW-----PDSVAPFKI 349
           +      K G+ G        +   G   +    I    D   ++        +      
Sbjct: 308 VAAPENVKMGSIGGGGRYDDLTGIFGLKDMSGIGISFGLDRIYLVLEELGLFPATVTENT 367

Query: 350 SLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSK 409
            ++ I   ++       K   RL +            ++G Q   AD    P  V+ G +
Sbjct: 368 KVLFINFGEKEAL-YAMKAVKRLREENIIAELYPDSAKMGKQMKYADKRSIPYVVLAGEE 426

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
            ++D K  +KH  +G + ++    +     
Sbjct: 427 EINDKKFTLKHMKSGEQSNLDFNGLSGALK 456


>gi|15612587|ref|NP_240890.1| seryl-tRNA synthetase [Bacillus halodurans C-125]
 gi|20139939|sp|Q9KGN4|SYS_BACHD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|10172636|dbj|BAB03743.1| seryl-tRNA synthetase [Bacillus halodurans C-125]
          Length = 425

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 68/209 (32%), Gaps = 11/209 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +   G +    +   + +   ++ G  E+  P L +      +G+   + ++  ++ 
Sbjct: 163 FAFYKGAGARLERALINFMMDLHHDKHGYEEVLPPYLVNRTSMTGTGQLPKFEEDAFKI- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              ++     PT E  +T++ R  I S   LP  +    + FR E     R   G++R  
Sbjct: 222 --REEDYFLIPTAEVPVTNLHRDEILSADQLPIAYTAYSMNFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYN--KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-EF 210
           +F   +   F    +               L++            A+ G         E 
Sbjct: 280 QFNKVELVRFVAPEDSYDELEKLTGHAEKVLQLLKLPYRVMSMCTADLGFTAAKKYDLEV 339

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDF 239
            + +     ++    +F DF     N  F
Sbjct: 340 WIPSANTYREISSCSNFEDFQARRANIKF 368


>gi|302336512|ref|YP_003801719.1| seryl-tRNA synthetase [Olsenella uli DSM 7084]
 gi|301320352|gb|ADK68839.1| seryl-tRNA synthetase [Olsenella uli DSM 7084]
          Length = 428

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 69/211 (32%), Gaps = 13/211 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
            Y    +G +    +     +   R G  E   P + + D    +G+   + +++  ++ 
Sbjct: 165 FYLLGGMGARMERALINFFIDMHVRAGFKEWWPPVITNYDSLFGTGQLPKFDEDLFHVSG 224

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                M   PT E ++T+I R        LP  +      FR+E     R   G++R  E
Sbjct: 225 G----MYLIPTAEVMLTNIHRDETLDASQLPLLYTAFTPCFREEAGSAGRDTRGIIRVHE 280

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F    +        M          LGL    +   +G IG         E 
Sbjct: 281 FDKVEMVKFAKPEDSMSQL-ESMVAEAELCLKTLGLPYHVVTLCTGDIGFSACKCYDIEV 339

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            + +     ++    +  DF     N  + D
Sbjct: 340 WLPSYNSYKEISSCSNCGDFQARRANIKYRD 370


>gi|78355243|ref|YP_386692.1| seryl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123768909|sp|Q316Z9|SYS_DESDG RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78217648|gb|ABB36997.1| seryl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 427

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 14/200 (7%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             W     K    + A   +      G +E+  P + +A     +G+   + +++ +L D
Sbjct: 163 VLWH-WAAKLERALTAFFLDVHTREHGYMEVYPPAMVNAQTMTGTGQLPKFEEDLFKLRD 221

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                    PT E  +T++    +     LP  +      FR E     +   G +R  +
Sbjct: 222 S---EYYLIPTAEVPLTNLHSGEVVPEEKLPIAYTAQTQCFRSEAGSYGKDTKGFIRQHQ 278

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F    +  +    K+      +  +LGL    +   SG +G   +     E 
Sbjct: 279 FTKVEMVRFAHPEKSFEEL-EKLRSHAEVLLQKLGLHYRVVTLCSGDMGFSAAKTYDLEV 337

Query: 211 IVLADTGETQVFCSKDFMDF 230
            +       ++    +  DF
Sbjct: 338 WLPGQDKYREISSCSNCTDF 357


>gi|257417382|ref|ZP_05594376.1| seryl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|257159210|gb|EEU89170.1| seryl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
          Length = 423

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 75/212 (35%), Gaps = 13/212 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +      G  EM  P + +      +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERALYNFMLDLHVYEHGYTEMITPYIVNDTAMFGTGQFPKFKEDVFQLQ 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D     +   PT E  +T+ + + I   ++LP  F  +   FR E     R   G++R  
Sbjct: 223 D---TDLTLIPTAEVPLTNYYNNEILDGKDLPIYFTALSPSFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F       +        +   I  +LGL    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFSDAEHSYEELEKMT-NNAEEILQKLGLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             + A     ++    +  DF        + D
Sbjct: 339 VWIPAQETYREISSCSNCEDFQARRAMIRYRD 370


>gi|29377733|ref|NP_816887.1| seryl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227555642|ref|ZP_03985689.1| seryl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229547172|ref|ZP_04435897.1| seryl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|229550742|ref|ZP_04439467.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255971509|ref|ZP_05422095.1| seryl-tRNA synthetase [Enterococcus faecalis T1]
 gi|255974459|ref|ZP_05425045.1| seryl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256618568|ref|ZP_05475414.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256761814|ref|ZP_05502394.1| seryl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256854941|ref|ZP_05560302.1| seryl-tRNA synthetase [Enterococcus faecalis T8]
 gi|256957056|ref|ZP_05561227.1| seryl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256960920|ref|ZP_05565091.1| seryl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256963942|ref|ZP_05568113.1| seryl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|257078733|ref|ZP_05573094.1| seryl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|257083965|ref|ZP_05578326.1| seryl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257087795|ref|ZP_05582156.1| seryl-tRNA synthetase [Enterococcus faecalis D6]
 gi|257088440|ref|ZP_05582801.1| seryl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|257418881|ref|ZP_05595875.1| seryl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257421304|ref|ZP_05598294.1| seryl-tRNA synthetase [Enterococcus faecalis X98]
 gi|293384815|ref|ZP_06630660.1| serine--tRNA ligase [Enterococcus faecalis R712]
 gi|293388237|ref|ZP_06632756.1| serine--tRNA ligase [Enterococcus faecalis S613]
 gi|294781208|ref|ZP_06746555.1| serine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|300861572|ref|ZP_07107656.1| serine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|307268871|ref|ZP_07550236.1| seryl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307273946|ref|ZP_07555156.1| seryl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|307277353|ref|ZP_07558451.1| seryl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|307283995|ref|ZP_07564165.1| seryl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|307286509|ref|ZP_07566608.1| seryl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|307289982|ref|ZP_07569908.1| seryl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|312901342|ref|ZP_07760623.1| seryl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|312902989|ref|ZP_07762178.1| seryl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|312908857|ref|ZP_07767796.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312952975|ref|ZP_07771831.1| seryl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|312979500|ref|ZP_07791182.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|46577436|sp|Q82YY9|SYS2_ENTFA RecName: Full=Seryl-tRNA synthetase 2; AltName: Full=Serine--tRNA
           ligase 2; Short=SerRS 2; AltName:
           Full=Seryl-tRNA(Ser/Sec) synthetase 2
 gi|29345201|gb|AAO82957.1| seryl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227175219|gb|EEI56191.1| seryl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229304175|gb|EEN70171.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|229307754|gb|EEN73741.1| seryl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|255962527|gb|EET95003.1| seryl-tRNA synthetase [Enterococcus faecalis T1]
 gi|255967331|gb|EET97953.1| seryl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256598095|gb|EEU17271.1| seryl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256683065|gb|EEU22760.1| seryl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256709454|gb|EEU24501.1| seryl-tRNA synthetase [Enterococcus faecalis T8]
 gi|256947552|gb|EEU64184.1| seryl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256951416|gb|EEU68048.1| seryl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256954438|gb|EEU71070.1| seryl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|256986763|gb|EEU74065.1| seryl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|256991995|gb|EEU79297.1| seryl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|256995825|gb|EEU83127.1| seryl-tRNA synthetase [Enterococcus faecalis D6]
 gi|256997252|gb|EEU83772.1| seryl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|257160709|gb|EEU90669.1| seryl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257163128|gb|EEU93088.1| seryl-tRNA synthetase [Enterococcus faecalis X98]
 gi|291077897|gb|EFE15261.1| serine--tRNA ligase [Enterococcus faecalis R712]
 gi|291082384|gb|EFE19347.1| serine--tRNA ligase [Enterococcus faecalis S613]
 gi|294451671|gb|EFG20126.1| serine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|295112309|emb|CBL30946.1| seryl-tRNA synthetase [Enterococcus sp. 7L76]
 gi|300849033|gb|EFK76786.1| serine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|306498976|gb|EFM68468.1| seryl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|306502382|gb|EFM71659.1| seryl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|306503366|gb|EFM72615.1| seryl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|306505987|gb|EFM75159.1| seryl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|306509254|gb|EFM78314.1| seryl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|306514787|gb|EFM83337.1| seryl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|310625295|gb|EFQ08578.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|310629116|gb|EFQ12399.1| seryl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|310633657|gb|EFQ16940.1| seryl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|311287682|gb|EFQ66238.1| seryl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|311291575|gb|EFQ70131.1| seryl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|315026612|gb|EFT38544.1| seryl-tRNA synthetase [Enterococcus faecalis TX2137]
 gi|315030106|gb|EFT42038.1| seryl-tRNA synthetase [Enterococcus faecalis TX4000]
 gi|315033599|gb|EFT45531.1| seryl-tRNA synthetase [Enterococcus faecalis TX0017]
 gi|315036264|gb|EFT48196.1| seryl-tRNA synthetase [Enterococcus faecalis TX0027]
 gi|315143579|gb|EFT87595.1| seryl-tRNA synthetase [Enterococcus faecalis TX2141]
 gi|315148283|gb|EFT92299.1| seryl-tRNA synthetase [Enterococcus faecalis TX4244]
 gi|315151248|gb|EFT95264.1| seryl-tRNA synthetase [Enterococcus faecalis TX0012]
 gi|315153733|gb|EFT97749.1| seryl-tRNA synthetase [Enterococcus faecalis TX0031]
 gi|315155041|gb|EFT99057.1| seryl-tRNA synthetase [Enterococcus faecalis TX0043]
 gi|315158670|gb|EFU02687.1| seryl-tRNA synthetase [Enterococcus faecalis TX0312]
 gi|315163393|gb|EFU07410.1| seryl-tRNA synthetase [Enterococcus faecalis TX0645]
 gi|315165668|gb|EFU09685.1| seryl-tRNA synthetase [Enterococcus faecalis TX1302]
 gi|315168475|gb|EFU12492.1| seryl-tRNA synthetase [Enterococcus faecalis TX1341]
 gi|315172092|gb|EFU16109.1| seryl-tRNA synthetase [Enterococcus faecalis TX1342]
 gi|315174225|gb|EFU18242.1| seryl-tRNA synthetase [Enterococcus faecalis TX1346]
 gi|315576187|gb|EFU88378.1| seryl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315579766|gb|EFU91957.1| seryl-tRNA synthetase [Enterococcus faecalis TX0630]
 gi|315582998|gb|EFU95189.1| seryl-tRNA synthetase [Enterococcus faecalis TX0309A]
 gi|323479199|gb|ADX78638.1| seryl-tRNA synthetase [Enterococcus faecalis 62]
 gi|327536390|gb|AEA95224.1| serine--tRNA ligase [Enterococcus faecalis OG1RF]
 gi|329577273|gb|EGG58736.1| serine--tRNA ligase [Enterococcus faecalis TX1467]
          Length = 423

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 75/212 (35%), Gaps = 13/212 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +      G  EM  P + +      +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERALYNFMLDLHVYEHGYTEMITPYIVNDTAMFGTGQFPKFKEDVFQLQ 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           D     +   PT E  +T+ + + I   ++LP  F  +   FR E     R   G++R  
Sbjct: 223 D---TDLTLIPTAEVPLTNYYNNEILDGKDLPIYFTALSPSFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F       +        +   I  +LGL    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFSDAEHSYEELEKMT-NNAEEILQKLGLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
             + A     ++    +  DF        + D
Sbjct: 339 VWIPAQETYREISSCSNCEDFQARRAMIRYRD 370


>gi|109076884|ref|XP_001087588.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Macaca
           mulatta]
          Length = 77

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 379 VFWD-DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINY 437
              D D G  +  +   A L  +   ++VG K      V I+ R   +  + ++ E +  
Sbjct: 2   ADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETMER 61

Query: 438 ASHRFSNN 445
                 + 
Sbjct: 62  LQQLKESR 69


>gi|53712299|ref|YP_098291.1| seryl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60680477|ref|YP_210621.1| seryl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|253563663|ref|ZP_04841120.1| seryl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|265762490|ref|ZP_06091058.1| seryl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|52215164|dbj|BAD47757.1| seryl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60491911|emb|CAH06670.1| putative seryl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|251947439|gb|EES87721.1| seryl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|263255098|gb|EEZ26444.1| seryl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|301162011|emb|CBW21555.1| putative seryl-tRNA synthetase [Bacteroides fragilis 638R]
          Length = 424

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E  ++G  E+  PT+ +A     +G+      +M  
Sbjct: 164 GAGFPVYKGKGAQLQRALINFFLDEARKSGYTEIMPPTVVNAASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CE---VDDLYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL--SHE 209
             EF   +    D      +            +  +L L    +R   G +        +
Sbjct: 281 LHEFSKVELVRIDKPEHSRQSHQEM-LDHVEGLLQKLELPYRILRLCGGDMSFTAALCFD 339

Query: 210 FIVLADTGETQV 221
           F V ++  +  +
Sbjct: 340 FEVYSEAQKRWL 351


>gi|322383128|ref|ZP_08056955.1| seryl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321152790|gb|EFX45416.1| seryl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 409

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRY 86
           R G +         +  LG +    +   + +   +  G +E+  P L + D    +G+ 
Sbjct: 137 RAGKV--TGSRFVFYKGLGARLERALLNFMMDLHSDEHGYMEILPPYLVNRDSLTGTGQL 194

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP- 145
             + +++ R+   ++      PT E  +T+  R  I +   LP  F      FR E    
Sbjct: 195 PKFAEDVFRI---DNSDYFLIPTAEVPVTNYHRDEILTEEQLPGNFVAFSACFRSEAGAA 251

Query: 146 ---RFGVMRSREFLMKDAYSFDLTPEGSKH 172
                G++R  +F   +        +  K 
Sbjct: 252 GRDTRGLIRQHQFNKVELVKLVKPEDSYKE 281


>gi|328675779|gb|AEB28454.1| Seryl-tRNA synthetase [Francisella cf. novicida 3523]
          Length = 426

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 71/204 (34%), Gaps = 12/204 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            K   +++  + +    + G  E+ VP L + D    +G+   +  ++ +L    D    
Sbjct: 172 AKLHRSLSQFMLDMHTEKHGYEELYVPYLVNNDSLYGTGQLPKFAADLFKLE--GDFEYS 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVPITNLVRDEILDTETLPRYYTAHTPCFRSEAGSYGRDTKGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
               T +  + S   +     ++  +L L    M+  +G +G         E  + +   
Sbjct: 290 HI-TTADKGEESLELLTSHAEKVLQKLNLPYRVMKLCTGDMGFSAKKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++       DF          +
Sbjct: 349 YREISSCSWCGDFQARRMKARHKN 372


>gi|297528389|ref|YP_003669664.1| seryl-tRNA synthetase [Geobacillus sp. C56-T3]
 gi|297251641|gb|ADI25087.1| seryl-tRNA synthetase [Geobacillus sp. C56-T3]
          Length = 424

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 9/177 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P L +    + +G+   + ++     
Sbjct: 163 FVFYKGLGARLERALINFMLDIHLDEFGYEEVLPPYLVNRASMIGTGQLPKFAED---AF 219

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             + +     PT E  +T++ R  I +  +LP  +      FR E     R   G++R  
Sbjct: 220 HLDSEDYFLIPTAEVPVTNLHRDEILAADDLPIYYAAYSACFRAEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           +F   +   F    +               I  RLGL    +   +G +G   +  +
Sbjct: 280 QFNKVELVKFVKPEDSYDELEKLTRQ-AETILQRLGLPYRVVALCTGDLGFSAAKTY 335


>gi|163788032|ref|ZP_02182478.1| histidyl-tRNA synthetase [Flavobacteriales bacterium ALC-1]
 gi|159876352|gb|EDP70410.1| histidyl-tRNA synthetase [Flavobacteriales bacterium ALC-1]
          Length = 575

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 34/99 (34%), Gaps = 1/99 (1%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
             +       ++ I   +      C +   +L + G          ++  Q   A+    
Sbjct: 478 FPATITASTKVLFINFGETEAM-TCLQAVTKLRQAGVKAELYPDSVKMKKQMNYANRREI 536

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           P  V+VG + V      +K+  +G +  +  ++++    
Sbjct: 537 PYVVLVGEEEVKAKLFTLKNMESGEQTKLPFDKLLEALK 575


>gi|56418548|ref|YP_145866.1| seryl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|67461631|sp|Q5L3Y0|SYS_GEOKA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|56378390|dbj|BAD74298.1| seryl-tRNA synthetase [Geobacillus kaustophilus HTA426]
          Length = 424

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 9/177 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  E+  P L +    + +G+   + ++     
Sbjct: 163 FVFYKGLGARLERALINFMLDIHLDEFGYEEVLPPYLVNRASMIGTGQLPKFAED---AF 219

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
             + +     PT E  +T++ R  I +  +LP  +      FR E     R   G++R  
Sbjct: 220 HLDSEDYFLIPTAEVPVTNLHRDEILAADDLPIYYAAYSACFRAEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           +F   +   F    +               I  RLGL    +   +G +G   +  +
Sbjct: 280 QFNKVELVKFVKPEDSYDELEKLTRQ-AETILQRLGLPYRVVALCTGDLGFSAAKTY 335


>gi|113477024|ref|YP_723085.1| seryl-tRNA synthetase [Trichodesmium erythraeum IMS101]
 gi|122964624|sp|Q10YR2|SYS_TRIEI RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|110168072|gb|ABG52612.1| seryl-tRNA synthetase [Trichodesmium erythraeum IMS101]
          Length = 425

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 66/211 (31%), Gaps = 12/211 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             + +  G      +   + +   + G +E+  P L ++     +G+   + +E  +   
Sbjct: 167 FVALMGAGAALERAIIQFMLKRHIQVGYVEVMAPLLVNSQSLTATGQLPKFAEESFKC-- 224

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSRE 154
                +   PT E    +++R  I S   LP         FR E         G++R  +
Sbjct: 225 -AADDLWLIPTSEVSTMNLYRDEILSAEQLPIYHCAFTPCFRREAGAYGKDTRGLIRLHQ 283

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +           +     +      I   L L    +   SG +G   +     E 
Sbjct: 284 FNKVEMVKIVHPETSEEEHQKLVAD-AEAILQALKLPYRILELCSGDLGFSAAKCYDLEV 342

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            + +     ++    +  DF     N  F +
Sbjct: 343 WLPSSGTYREISSCSNVKDFQARRANIRFKE 373


>gi|206890029|ref|YP_002247872.1| seryl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|238065108|sp|B5YGU2|SYS_THEYD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|206741967|gb|ACI21024.1| seryl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 424

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 8/159 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           +G +    +   + +   + G IE+  P L +      +G+   + +++ ++ D      
Sbjct: 171 MGARLERALINFMLDLHTQKGYIEVLPPILVNKVSMTGTGQLPKFEEDLFKIVD---PEF 227

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I R  I S   LP  +      FR E     +   G++R  +F   + 
Sbjct: 228 YLIPTAEVPVTNIHREEILSEDELPIYYVSYTPCFRKEAGSHGKDVRGLIRQHQFNKVEL 287

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
             F    +  +   +        +   LGL    +   +
Sbjct: 288 VKFVKPEDSYEELESLTRD-AEEVLKMLGLPYRVVALCT 325


>gi|332293137|ref|YP_004431746.1| histidyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171223|gb|AEE20478.1| histidyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 557

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW--D--DMGEQIGSQFAVAD 396
                   + +  +   DQ       K  ++L + G       D     +Q+  Q   A+
Sbjct: 456 FPEETTEGVKVFFVNFGDQEAG-YAMKAISKLRQSGISAELYPDAVTSNKQMKKQMTYAN 514

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
               P  V+ G + +   +  +K+ + G +E +S++E++    
Sbjct: 515 RRNIPFLVLAGKEEMEAKQYTLKNMVEGSQETVSIDELVAALK 557


>gi|305667284|ref|YP_003863571.1| histidyl-tRNA synthetase [Maribacter sp. HTCC2170]
 gi|88709331|gb|EAR01564.1| histidyl-tRNA synthetase [Maribacter sp. HTCC2170]
          Length = 577

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 31/78 (39%)

Query: 364 ACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLT 423
           A  K+   L   G          ++  Q   A+    P  V++G + ++++   +K+   
Sbjct: 500 ASLKLVNELRSQGILADVYPSKTKMQKQMKYANNRNVPYVVLIGEQELTNNSFVVKNMKN 559

Query: 424 GIREDMSLEEVINYASHR 441
             +   SL+ + ++A   
Sbjct: 560 SEQITYSLDSIQDFAKTL 577


>gi|332664006|ref|YP_004446794.1| Histidyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
 gi|332332820|gb|AEE49921.1| Histidyl-tRNA synthetase [Haliscomenobacter hydrossis DSM 1100]
          Length = 448

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D+           +L   G +        +I  Q   A+    P  V+VG + +S   + 
Sbjct: 365 DEAAHLYAFAALGKLRAAGVNSEIYPDPGKIKKQMKYANDRQVPFVVLVGEEEMSSGLLS 424

Query: 418 IKHRLTGIREDMSLEEVI 435
            K+  +G +E +++EE+I
Sbjct: 425 FKNMQSGEQEKLTIEEII 442


>gi|327438151|dbj|BAK14516.1| seryl-tRNA synthetase [Solibacillus silvestris StLB046]
          Length = 430

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 11/209 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR-LAD 98
            +  LG +    +   + +   ++ G  EM  P + + D    +G+   + +++ + + +
Sbjct: 165 FYKGLGARLERALLNFMMDLHSDQHGYTEMLPPQIVNRDSLTGTGQLPKFEEDVFKLVRE 224

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            ++      PT E  +T+ +R  I S   LP  F      FR E     R   G++R  +
Sbjct: 225 EDEMDYYLIPTAEVPVTNYYRDEILSADMLPQAFSAFSANFRSEAGSAGRDTRGLIRQHQ 284

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEF 210
           F   +   F    E        +     ++   LGL    ++  +  +G         E 
Sbjct: 285 FNKVELVRFVKPEESY-EQLEILTGHAEKVLQLLGLPYRKLKMCTADLGFTAAKKYDLEV 343

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDF 239
            + A     ++    +F DF     N  F
Sbjct: 344 WIPAQNMYREISSCSNFEDFQARRANIRF 372


>gi|326692251|ref|ZP_08229256.1| seryl-tRNA synthetase [Leuconostoc argentinum KCTC 3773]
          Length = 436

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 85/254 (33%), Gaps = 20/254 (7%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + +E  + G  EM  P + +      +G+Y  +  +  R+      A  
Sbjct: 179 GARLERAVYNFMLDEHRQEGYTEMITPIVVNDTAMFGTGQYPKFQDDAYRVE---GLAQT 235

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAY 161
           Y PT E  +T+ +        +LP  F  +   FR E         G++R  +F   +  
Sbjct: 236 YIPTAEVPLTNYYAGETIPSEDLPIKFTALSPSFRKEAGAAGKDTRGLIRLHQFNKVEMV 295

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F    +        M  +   I  +LGL    +   +G +G   +     E  +     
Sbjct: 296 KFTKPEQSYAEL-ASMTANAENILQKLGLPYHVVMLSTGDMGFSAAKTYDIEVWMPQQKV 354

Query: 218 ETQVFCSKDFMDFPIPSENTDF---DDIISLNSIVEQWTAPYAAT-----SDVHNEKLFD 269
             ++    +  DF     +  +   +D + L   +         T      +  NE    
Sbjct: 355 YREISSVSNTEDFQARRMHITYRDDNDKLQLVHTLNGSGLAVGRTVAAILENYQNEDGTV 414

Query: 270 SLPENKRVSARGIE 283
           ++PE  R    G E
Sbjct: 415 TIPEVLRPYMGGQE 428


>gi|298387439|ref|ZP_06996991.1| histidine--tRNA ligase [Bacteroides sp. 1_1_14]
 gi|298259646|gb|EFI02518.1| histidine--tRNA ligase [Bacteroides sp. 1_1_14]
          Length = 454

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW--DDMG 385
            I    +   +   ++V   ++  +N    +         + A++   G       D   
Sbjct: 345 RIFDVLNQLELYPKEAVNGTELMFVNFGDKEAS---FSMSMLAKVRAAGIRAEIFPD--A 399

Query: 386 EQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            ++  Q + A+    P   IVG   +++ K  +K+  TG +  +S+EE+I    +
Sbjct: 400 AKMKKQMSYANAKSVPFVAIVGENEMNEGKAMLKNMETGEQNLVSVEELIAALRN 454


>gi|197124303|ref|YP_002136254.1| seryl-tRNA synthetase [Anaeromyxobacter sp. K]
 gi|238689868|sp|B4UFJ8|SYS_ANASK RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|196174152|gb|ACG75125.1| seryl-tRNA synthetase [Anaeromyxobacter sp. K]
          Length = 435

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 81/254 (31%), Gaps = 19/254 (7%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
            +    + +   +     G  E+  P L + +    +G+   + +++ +    N+  M  
Sbjct: 173 ARLERAIVSFFIDVHTSRGYTEILPPYLVTGETMTGTGQLPKFEEDLFKTT--NEPPMYL 230

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYS 162
            PT E  +T++ R  I     +P ++      FR E     R   G+MR  +F   +   
Sbjct: 231 IPTAEVPVTNMHRDEIFEASAMPVSYCAFSPCFRAEAGSAGRDTRGIMRQHQFHKVELVK 290

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIVLADTGE 218
                E       KM      +  RLGL    +   +G +G         E         
Sbjct: 291 LSKAEESEAEH-EKMLDDACEVLRRLGLHFRVVLLCAGDMGFSSAKTYDIEVWCPGQGAY 349

Query: 219 TQVFCSKDFMDFPIPSENTDF---DDIISLNSIVEQWTAPYAATSDVHNEKLFDS----- 270
            ++    +  DF        +   +    L   +         T     E+  ++     
Sbjct: 350 REISSVSNCEDFQARRIRVRYRGENGKPRLAHTLNGSGVAVGRTIVAILEQCQEADGTVV 409

Query: 271 LPENKRVSARGIEV 284
           +PE  R    G+E 
Sbjct: 410 IPEPLRPYMGGLER 423


>gi|326316281|ref|YP_004233953.1| histidyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323373117|gb|ADX45386.1| histidyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 446

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 58/432 (13%), Positives = 114/432 (26%), Gaps = 32/432 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      + +   +R    +     +  P L+   L+V   G   D   KEM  
Sbjct: 23  GMNDILPPESSRWEWLEDKVRGLMGQFAYRNVRTPILEHTALFVRGIGEVTDIVEKEMYS 82

Query: 96  LADRND-----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELR---PRF 147
             DR+D       +   P +   +      H   Y      +Y   +  R++ +    R 
Sbjct: 83  FHDRSDKYGDNDHLSLRPENTAGVVRAAIEHNMLYDGPKRLWYTGPMFRREKPQRGRFRQ 142

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKH--SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
                 E L       D            +          + LG  +   R     I   
Sbjct: 143 FHQIGAEALGFAGPDVDAELILLADALWKSIGLTDVRLELNSLGQPAERARHREQLIAHF 202

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHN 264
             H  ++  D            +D   P+     +    L   + E+  A +     + +
Sbjct: 203 ERHADLLDEDGKRRLHTNPLRILDTKNPAMKPVVESAPRLMDFLGEESLAHFDGLRAILD 262

Query: 265 EKLFDSLPENKRVSARGIEVGHIFY-----FGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                     + V         +F       G++ ++     +     +       + G 
Sbjct: 263 ANGIAYTINPRLVRGLDYYNLTVFEFITDRLGSQGTVCAGGRYDDLIVQVGGKPAPAVGW 322

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
                    +              V             D        +   +L + G  V
Sbjct: 323 AIGVERVLELLREQGAAIPEARPDVYAVVP--------DASAAPVVLRTLRQLREAGLSV 374

Query: 380 FWDDMGE----QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTG--IREDMSLEE 433
                         SQF  AD  G    ++ G+  ++   V +K        + +  L+E
Sbjct: 375 QMHAASAEGQGSFKSQFKRADASGAAFALVFGADELARGTVTVKPLREQGAEQVERRLDE 434

Query: 434 VINYASHRFSNN 445
           +  +A+   S+ 
Sbjct: 435 IPAWAATLQSSR 446


>gi|312889997|ref|ZP_07749541.1| histidyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603]
 gi|311297529|gb|EFQ74654.1| histidyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603]
          Length = 458

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 29/83 (34%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D             L            G ++  Q   A+    P  +++GS  +    + 
Sbjct: 375 DNDGETYALPFLQELRSREIRSELYPAGSKMKKQLDYANAKQIPYVIVIGSDEMESGLLS 434

Query: 418 IKHRLTGIREDMSLEEVINYASH 440
            K+ LTG +E +S E ++   + 
Sbjct: 435 FKNMLTGDQEKLSTEMIVAMLAE 457


>gi|169612057|ref|XP_001799446.1| hypothetical protein SNOG_09144 [Phaeosphaeria nodorum SN15]
 gi|160702428|gb|EAT83336.2| hypothetical protein SNOG_09144 [Phaeosphaeria nodorum SN15]
          Length = 629

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 76/264 (28%), Gaps = 29/264 (10%)

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV 262
               +      AD  + ++  S  +++    ++ + +D  + +                +
Sbjct: 355 QHMANEMAHYAADCWDAELLTSYGWIECVGCADRSAYDLTVHMKKTGAPLVVREPRKEPL 414

Query: 263 HNEKLFDSLPENKRVSARGIEVGH----IFYFGTKYSLPMSATFKGA-----------DG 307
             E+    L + K       +       I          +S   +             DG
Sbjct: 415 KVEEWQCDLDKKKFGPKFKKDGKTVEAAIEALSQDLREKLSLDLEKEGKIVIDVPGVGDG 474

Query: 308 KDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVC 361
           K    +         RV  A+ E  +  +       +  F  ++   K      +     
Sbjct: 475 KVEVPKELISIEKRTRVENALCEHIYWTREQDEARGILSFPPTVAPTKVLIVPLSSHTDF 534

Query: 362 RDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
           +     +  +L ++G         E     F   D LG PL + +  + V D+   ++ R
Sbjct: 535 KPFVRTLSDKLQELGIST---PTNE-----FQRNDELGTPLGITIDFQSVKDNTFTLRDR 586

Query: 422 LTGIREDMSLEEVINYASHRFSNN 445
            +  +    L+E+    S   +  
Sbjct: 587 DSTEQVRAGLDEITGAISSLVNGR 610



 Score = 50.9 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
           G+Y + P G    +N+  + R+    +   +E+    L   ++   SG  D +   M +
Sbjct: 39 SGLYDFGPPGCALTNNIVDVWRKHFVLKENMLEVDCTMLTPHEVLKTSGHVDKFADWMCK 98


>gi|297616225|ref|YP_003701384.1| seryl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144062|gb|ADI00819.1| seryl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
          Length = 423

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 74/204 (36%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG +    + + + +   ++ G  E+  P + +AD  V +G+   + ++M ++  R    
Sbjct: 168 LGARLERALISFMLDLHVDKHGYREVFPPFMVTADCMVGTGQLPKFAEDMFKVEGR---E 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+++R  I +   LP         FR E     R   G++R  +F   +
Sbjct: 225 LYMVPTAEVPLTNLYREEILAAEQLPMYLTAYTACFRAEAGSHGRDTRGIIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                      +            +   LGL    M   +G +G   +     E  + + 
Sbjct: 285 LVKITSPETSYEELEKLTRD-AEEVLQLLGLPYRVMLLCTGDMGFSSAKTYDLEVWLPSY 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     N  +
Sbjct: 344 GEYKEISSCSNCGDFQARRANIRY 367


>gi|124026368|ref|YP_001015484.1| seryl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
 gi|166222761|sp|A2C409|SYS_PROM1 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|123961436|gb|ABM76219.1| Seryl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
          Length = 426

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 18/209 (8%)

Query: 10  ILQENPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            L+E        +++L L    R+ +I +      +      K   ++   + +   + G
Sbjct: 139 TLKE----HWEIANQLNLWDSERSSVIAKSR--FVTLFKHAAKLERSLINFMLDLHIKKG 192

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P L +      SG+   + +E  R AD     +   PT E  +T + R  I   
Sbjct: 193 YLEVLPPALVNTASLTGSGQLPKFAEESFRCAD---DDLWLTPTAEVPITSLHRGEIIPR 249

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             LP  +      FR E     R   G++R  +F   + Y F  TPE S+ +  ++    
Sbjct: 250 DLLPLKYVAYSPCFRREAGSYGRDTRGLIRLHQFNKVELYWFS-TPETSEDALEQITSDA 308

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
             +   L L    ++  +G +G      +
Sbjct: 309 ESVLQELELPYRVIQLCTGDLGFSAKKTY 337


>gi|71993686|ref|NP_001023373.1| Histidyl tRNA Synthetase family member (hrs-1) [Caenorhabditis
           elegans]
 gi|3879781|emb|CAA93416.1| C. elegans protein T11G6.1a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 520

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 329 IESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQI 388
           IE            ++   +  +    A   + RD  +K+   L   G          + 
Sbjct: 404 IERLFAIMEARQKVAIRTTQTEVYVASAQKNLVRDR-KKLVKMLRSAGIKTEM---ALKA 459

Query: 389 GSQ----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
             +    F  A+    PL +++G + + D  V++++ +T   + + L+++I       +
Sbjct: 460 NPKLLTQFQYAEERRIPLAIVIGEQELKDGVVKLRNVVTRDEQTIKLDQLITAVRDTLA 518


>gi|313618814|gb|EFR90704.1| histidyl-tRNA synthetase [Listeria innocua FSL S4-378]
          Length = 110

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 38/103 (36%)

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
           ++   K   + +             +  +L + G     D +  ++ +Q   A+      
Sbjct: 8   NIPETKPLEVYVITAQPEAELKAVTLVNKLRQNGISAEKDYLKRKLKAQLKDANRKKAIY 67

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
            VI+G + +     ++K+  TG +E +S   +I   ++     
Sbjct: 68  TVILGEEELQTGNYQLKNMETGEQEAVSETTIIEELTNTKEEK 110


>gi|260911944|ref|ZP_05918509.1| serine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633967|gb|EEX52092.1| serine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 429

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 10/185 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   EE  ++G +E+  P + +      +G+      +M  
Sbjct: 164 GAGFPIYIGKMARLQRALEAFFLEEARKSGYLEVQPPLVVNQASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+IFR  I   ++LP         FR E     +   G+ R
Sbjct: 224 AEQ---DDLYLIPTAEVPVTNIFRDVILDEKDLPVMRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG--DLSHE 209
             +F   +    D  PE S  S+ KM      +  +L L    +    G +     + ++
Sbjct: 281 LHQFDKVEIVRIDK-PEHSHESHKKMLEHVEGLLQKLELPYHILLLCGGDMSFTASICYD 339

Query: 210 FIVLA 214
           F V +
Sbjct: 340 FEVWS 344


>gi|72382646|ref|YP_292001.1| seryl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
 gi|123620933|sp|Q46JN0|SYS_PROMT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|72002496|gb|AAZ58298.1| seryl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
          Length = 426

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 18/209 (8%)

Query: 10  ILQENPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTG 65
            L+E        +++L L    R+ +I +      +      K   ++   + +   + G
Sbjct: 139 TLKE----HWEIANQLNLWDSERSSVIAKSR--FVTLFKHAAKLERSLINFMLDLHIKKG 192

Query: 66  AIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSY 125
            +E+  P L +      SG+   + +E  R AD     +   PT E  +T + R  I   
Sbjct: 193 YLEVLPPALVNTASLTGSGQLPKFAEESFRCAD---DDLWLTPTAEVPITSLHRGEIIPR 249

Query: 126 RNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSY 181
             LP  +      FR E     R   G++R  +F   + Y F  TPE S+ +  ++    
Sbjct: 250 DLLPLRYVAYSPCFRREAGSYGRDTRGLIRLHQFNKVELYWFS-TPERSEDALEQITSDA 308

Query: 182 LRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
             +   L L    ++  +G +G      +
Sbjct: 309 ESVLQELELPYRVIQLCTGDLGFSAKKTY 337


>gi|116490520|ref|YP_810064.1| seryl-tRNA synthetase [Oenococcus oeni PSU-1]
 gi|290889920|ref|ZP_06553007.1| hypothetical protein AWRIB429_0397 [Oenococcus oeni AWRIB429]
 gi|122277293|sp|Q04GM3|SYS_OENOB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116091245|gb|ABJ56399.1| seryl-tRNA synthetase [Oenococcus oeni PSU-1]
 gi|290480530|gb|EFD89167.1| hypothetical protein AWRIB429_0397 [Oenococcus oeni AWRIB429]
          Length = 439

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 67/207 (32%), Gaps = 11/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + +E  R G  E+  P + + +    +G++  +  +        +++M 
Sbjct: 181 GARLERAVYNFMLDEHRREGYTELLTPYMVTNESMYATGQFPKFVDD--AYEVGKNQSMT 238

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAY 161
             PT E  + +  R  +     LP     +   FR E         G++R  +F   +  
Sbjct: 239 MIPTAEVALVNWRRDEVLDESELPLYITALSPAFRQEAGAAGKDTRGLIRLHQFNKVEMV 298

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F    +               I  +L L    +R  +G +G   +     E        
Sbjct: 299 KFTKPEDSYNELEKMTVD-AENILQKLELPYHVIRLSTGDMGFGSAMTYDLEVWFPTQDK 357

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF     +  + D  +
Sbjct: 358 YREISSVSNDEDFQARRGHIQYRDSKT 384


>gi|121607083|ref|YP_994890.1| histidyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
 gi|121551723|gb|ABM55872.1| histidyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
          Length = 441

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/434 (13%), Positives = 110/434 (25%), Gaps = 52/434 (11%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      + +   +R    R     +  P ++   L+V   G   D   KEM  
Sbjct: 20  GMNDILPPESARWEWLEDKVRTLMARYAYRNIRTPIVEPTALFVRGLGAVTDIVEKEMYS 79

Query: 96  LADRN-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSRE 154
             DR   + +   P     +      H   Y       Y +   FR E   R    R R+
Sbjct: 80  FDDRQSGEPLTLRPEATAGVVRAVAEHSLLYDG-GKRLYYMGPMFRHERPQR---ARYRQ 135

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
           F    A +             ++ +    ++  LGL+++ +   S        HE +   
Sbjct: 136 FHQVGAEALGFPGP---ELDAELILLAHALWRELGLRAVRLELNSLG----EPHERLAHR 188

Query: 215 DTGETQVFCSKDFMDF---------PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNE 265
                 +    + +D          P+   +T    + ++     +        S  H  
Sbjct: 189 AALSAYLKQHAELLDEQARRRLDSNPLRILDTKNPAMQAMVEAAPRLIDFLGRESLAHLH 248

Query: 266 K-------------LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYV 312
                         +   L          +        G + ++     +    G+    
Sbjct: 249 AVQAILDANGVAWTINPRLVRGMDYYNLTVFEFVTDQLGAQGTICGGGRYDYLIGQMGGK 308

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARL 372
              + G          +  +           V                          RL
Sbjct: 309 PAPAVGWALGMERVLELLDAQATAWPCLVPDVYAVIPC--------ASVLPLALATLERL 360

Query: 373 SKVGCDVFWDDMGE------QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
            + G  V              +  QF  AD  G    ++ G    +   V +K    G  
Sbjct: 361 RQHGLAVQMHAAPAGEQGMGSMKFQFKKADASGARYALVFGEDERARGMVSVKALRDGAG 420

Query: 427 EDMSLEEVINYASH 440
             +  E  ++  + 
Sbjct: 421 TQV--EHALDTLAQ 432


>gi|57339548|gb|AAW49761.1| hypothetical protein FTT1330 [synthetic construct]
          Length = 461

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 12/204 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            K    ++  + +    + G  E+ VP L + D    +G+   +  ++ +L    D    
Sbjct: 198 AKLHRALSQFMLDLHTEKHGYEELYVPYLVNNDSLYGTGQLPKFAADLFKLE--GDFEYS 255

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +  
Sbjct: 256 LIPTAEVPITNLVRDEILDTETLPRYYTAHTPCFRSEAGSYGRDTKGMIRQHQFEKVELV 315

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
               T +  + S   +     ++  +L L    M+  +G +G         E  + +   
Sbjct: 316 HI-TTADKGEESLELLTSHAEKVLQKLNLPYRVMKLCTGDMGFSAKKTYDLEVWLPSQNT 374

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++       DF          +
Sbjct: 375 YREISSCSWCGDFQARRMKARHKN 398


>gi|325120136|emb|CBZ55690.1| putative threonyl-tRNA synthetase [Neospora caninum Liverpool]
          Length = 608

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 40 YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
            +LP G++ L N+  I+RE+Q      E++ P+L    LW  SG +  Y   M  + 
Sbjct: 17 PVFLPDGRQLLANIKGILREQQKLLQFQEVATPSLAQTGLWRRSGHWTHYRANMWTIE 74



 Score = 44.7 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 53/382 (13%), Positives = 100/382 (26%), Gaps = 80/382 (20%)

Query: 126 RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           R+LP    +    FR E R    G+ R REF   D +      +      +++       
Sbjct: 212 RHLPLRISEFGRVFRRERRSALCGLFRLREFTQDDGHILCTRSQAVGEITSQLSSILQLY 271

Query: 185 FHRLGLKSIPMRAE--SGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDI 242
           F   G+    ++    + P            +             +D        +F   
Sbjct: 272 FRVFGIAPELIKVSLGTRPAKASTLPAGAADSANAALWREAESWLLDAAARVLPENFKVE 331

Query: 243 ISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF 302
                  E   A Y    D     L D+     +     +++         +S   S  +
Sbjct: 332 RE-----EGGGAFYGPKLDF---SLPDARGRRWQTGTIQVDLLQPPGLERVFSRRHSTLY 383

Query: 303 KGADGKDHYVQM----------------------------GSYGIGAMRVVAAVIESSHD 334
                                                       +G++    A++    +
Sbjct: 384 PSPPSSSSSPSSSSRSPASFSRSPSSPSSLPSSCLPLVLIHRAAVGSLERFLALLL---E 440

Query: 335 GKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCD---------------- 378
            +    P  +AP K ++  +  H +  +   +K+   L +   D                
Sbjct: 441 LRNGELPLWIAPVKAAVCPVSVHSRESQHYAQKVARLLRRS-LDSSGAFEKEEIEERGEQ 499

Query: 379 -----VFWDDMGEQIGSQFAVADLLG---FPLQVIVGSKFVSDSKVEI---KHR------ 421
                V  D     + ++    DLLG    PL  +VG +      V +     R      
Sbjct: 500 ASTSGVLVDLRPLHLNTKLK--DLLGRRRIPLLFLVGPREEKTEGVTVLTQAWRTSSEDG 557

Query: 422 -LTGIRED-MSLEEVINYASHR 441
              G R   +SL E + +    
Sbjct: 558 KKDGERGQFLSLNEAVRFFREL 579


>gi|300174045|ref|YP_003773211.1| seryl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
 gi|299888424|emb|CBL92392.1| Seryl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
          Length = 436

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 8/169 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + +E  + G  EM  P + +      +G+Y  +  +  R++     A  
Sbjct: 179 GARLERAVYNFMLDEHRKEGYTEMITPIVVNDAAMFGTGQYPKFQDDAYRVS---GLAQT 235

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAY 161
           Y PT E  +T+ +        +LP  F  +   FR E         G++R  +F   +  
Sbjct: 236 YIPTAEVPLTNYYSGETLPAEDLPIKFTALSPSFRKEAGAAGKDTRGLIRLHQFNKVEMV 295

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            F    +        M  +   I  +LGL    +   +G +G   +  +
Sbjct: 296 KFTKPDQSYAEL-ESMTANAESILQKLGLPYHVIMLSTGDMGFSAAKTY 343


>gi|73748415|ref|YP_307654.1| seryl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|147669195|ref|YP_001214013.1| seryl-tRNA synthetase [Dehalococcoides sp. BAV1]
 gi|289432463|ref|YP_003462336.1| seryl-tRNA synthetase [Dehalococcoides sp. GT]
 gi|123619533|sp|Q3ZWY0|SYS_DEHSC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|189083567|sp|A5FRN4|SYS_DEHSB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|73660131|emb|CAI82738.1| seryl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|146270143|gb|ABQ17135.1| seryl-tRNA synthetase [Dehalococcoides sp. BAV1]
 gi|288946183|gb|ADC73880.1| seryl-tRNA synthetase [Dehalococcoides sp. GT]
          Length = 413

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 54/176 (30%), Gaps = 9/176 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           I       Y     G +    + A + +    +    E+  P +   +  V SG    + 
Sbjct: 146 IKLSGSRFYILKGAGARLQRALIAFMLDLHTRKHDYTEIYPPYMIKRECLVASGNLPKFA 205

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR---- 146
             +       ++   + PT E  +T++ R  I S   LP  +      FR E        
Sbjct: 206 DNLY---HDAEEDYWWVPTAEAPLTNLHRDEILSAEQLPIHYVAYTACFRREKMSAGKDV 262

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            G+ R  +F   + Y +    +        +      I   L +     +  +  I
Sbjct: 263 RGIKRLHQFDKVELYKYCKPEDSFAELEKMVAD-AEEIADALKIPYRLKQLVTADI 317


>gi|118579055|ref|YP_900305.1| seryl-tRNA synthetase [Pelobacter propionicus DSM 2379]
 gi|166222758|sp|A1ALM7|SYS_PELPD RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|118501765|gb|ABK98247.1| seryl-tRNA synthetase [Pelobacter propionicus DSM 2379]
          Length = 422

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 71/205 (34%), Gaps = 13/205 (6%)

Query: 46  GQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    + + + +      G +E+  P + + D    +G+   + +++ ++ D      
Sbjct: 168 GARMERALISFMLDLHTASHGYLEVLPPFMVNRDSMTGTGQLPKFEEDLFKMTD---PEY 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I R  I    +LP  +      FR E     +   G++R  +F   + 
Sbjct: 225 FLIPTAEVPVTNIHRGEILKKSDLPIRYAAYTPCFRREAGSYGKDTRGLIRQHQFNKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F    + ++           ++   L L    M   S  IG   +     E  +    
Sbjct: 285 VKFSHPSQSAEELEKLTAD-AEKVLQLLELPYRVMALCSADIGFSAARTYDLEVWLPGQN 343

Query: 217 GETQVFCSKDFMDFPIPSENTDFDD 241
              ++     F DF     N  F +
Sbjct: 344 CYREISSCSCFGDFQARRANIRFRE 368


>gi|229496633|ref|ZP_04390347.1| histidyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
 gi|229316530|gb|EEN82449.1| histidyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
          Length = 456

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 1/101 (0%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGF 400
             +       ++ I    +  +     I  +L   G  V       ++  Q + AD L  
Sbjct: 355 FPTTTNTSTQVLIINFGKEEVQQM-LPIVQKLRADGISVEIYPDAAKLKKQMSYADSLAI 413

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           P  ++ GS+ +      +K    G +E +S E++ ++ + +
Sbjct: 414 PYVILAGSEELKQGIFTLKDMAEGSQETLSQEQLTHFFTSK 454


>gi|226941475|ref|YP_002796549.1| Sys [Laribacter hongkongensis HLHK9]
 gi|254783032|sp|C1DBY7|SYS_LARHH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|226716402|gb|ACO75540.1| Sys [Laribacter hongkongensis HLHK9]
          Length = 426

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 79/254 (31%), Gaps = 19/254 (7%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +     +  G  E+  P + +A     +G+   + +++ R+  R D+   
Sbjct: 169 ARLHRALAQFMLNTHADEHGYTEVYTPYMVNATSMYGTGQLPKFEEDLFRV-PRGDENFY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAY 161
             PT E  +T+  R  I    +LP  +      FR E         G++R  +F   +  
Sbjct: 228 LVPTAEVPVTNFVRDEIVKAADLPLRYVAHTPCFRSEAGAYGRDTRGMIRQHQFDKVELV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLADTG 217
                 E        +      I  +LGL    +   +G +          E  + A   
Sbjct: 288 QVVRPEESLNAL-ETLTGHAETILKKLGLPYRVIVLCTGDMGFGSQKTYDIEVWLPAQDT 346

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA--------PYAATSDVHNEKLFD 269
             ++       DF        F D    N +V               A   +  N     
Sbjct: 347 YREISSCSSMGDFQARRMQARFKDEAGKNQLVHTLNGSGLAVGRTLVAVLENYQNADGSV 406

Query: 270 SLPENKRVSARGIE 283
           ++PE  R    G+E
Sbjct: 407 TVPEVLRPYMGGLE 420


>gi|332974398|gb|EGK11324.1| serine--tRNA ligase [Psychrobacter sp. 1501(2011)]
          Length = 432

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 13/207 (6%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA-- 103
            +    +   +      + G  E  VP + ++D    +G+   + +++ +L +  +    
Sbjct: 170 AQLHRALIQFMLNTHTVKYGYTECYVPYIVNSDSLKGTGQLPKFEEDLFKLTNHTNNDGM 229

Query: 104 -MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                PT E  MT++ R        LP  F      FR E     R   G++R  +F   
Sbjct: 230 GFYLIPTAEVPMTNLVRGERLDASQLPLKFTAHTPCFRSEAGSHGRDTRGLIRQHQFEKV 289

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +      T   S     +M      I  +L L    ++  +G +G         E  + +
Sbjct: 290 EMV-NIATAAQSDELLEQMTAQAEYILQQLELPYRVVKLCTGDMGFSALRTYDIEVWLPS 348

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDD 241
                ++    +  DF      T   D
Sbjct: 349 QDTYREISSCSNCGDFQARRMGTRVKD 375


>gi|255010901|ref|ZP_05283027.1| histidyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313148708|ref|ZP_07810901.1| histidyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313137475|gb|EFR54835.1| histidyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
          Length = 454

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 5/129 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ I   ++        I A+  
Sbjct: 329 FGMAGVSGVGISFGADRIFDVLNQLELYPKEAVNGTQLLFINFGEKEA-AFSMGILAKAR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G       D    ++  Q + A++   P   IVG   +++ K  +K+  +G ++ ++ 
Sbjct: 388 AAGIRAEIFPD--AAKMKKQMSYANVKNIPFVAIVGENEMNEGKAMLKNMESGEQQMVTA 445

Query: 432 EEVINYASH 440
           EE+I   + 
Sbjct: 446 EELIGVLTK 454


>gi|239939952|ref|ZP_04691889.1| histidyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|239986436|ref|ZP_04707100.1| histidyl-tRNA synthetase [Streptomyces roseosporus NRRL 11379]
 gi|291443383|ref|ZP_06582773.1| histidyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|291346330|gb|EFE73234.1| histidyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
          Length = 420

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/408 (12%), Positives = 113/408 (27%), Gaps = 24/408 (5%)

Query: 38  GIYSWLP----LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGK 91
           G Y   P          + ++A +R+    +G   +  P  ++ +L+        D   K
Sbjct: 9   GTYDLTPPRSAKFLAVREAISAPLRD----SGYGYIETPGFENVELFARGVGESTDIVTK 64

Query: 92  EMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVM 150
           EM  L  +    +   P     +             NLP   +     +R E        
Sbjct: 65  EMYTLTTKGGDQLALRPEGTASVLRAALEANLHKAGNLPVKLWYSGSYYRYERPQAG--- 121

Query: 151 RSREFLMKDAY-SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES--GPIGGDLS 207
           R R F    A       P            +Y  +  R     +    +    P+  +  
Sbjct: 122 RYRHFSQVGAEAIGTEDPALDAELIILADQAYRSLGLRQFRILLNSLGDKECRPVYREAL 181

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKL 267
             F+   D  E      +      +  +  D    ++    +  +              L
Sbjct: 182 QSFLRDLDLDEETRRRIEINPLRVLDDKRADVQKQLTDAPKLRDYLCDACKAYHEEVRAL 241

Query: 268 FDSLP---ENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRV 324
             +     E+     RG++      F   +    S +  G  G+   +     G     V
Sbjct: 242 LTAAGVAFEDDEKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGPELPSV 301

Query: 325 VAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDD- 383
             A+               +     + +      +  R     +   L + G    +   
Sbjct: 302 GWALGVDRTVLALEAEGVELDLPATTSVYAVPLGEEARRVLFGVVTELRRAGIAADFAFG 361

Query: 384 -MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
             G + G+    A+  G    ++ G + +++  V++K   +G +  + 
Sbjct: 362 GRGLK-GAM-KSANRSGARYTLVAGERDLAEGVVQLKDMESGEQSAVP 407


>gi|210623920|ref|ZP_03294129.1| hypothetical protein CLOHIR_02081 [Clostridium hiranonis DSM 13275]
 gi|210153284|gb|EEA84290.1| hypothetical protein CLOHIR_02081 [Clostridium hiranonis DSM 13275]
          Length = 423

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 11/188 (5%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRY 86
           R G I         +  LG +   ++            G  E+  P + + D +  +G+ 
Sbjct: 154 RAGKI--TGSRFTLYKGLGARLERSLINFFLNTHTADHGYTEVLPPFMANRDSFCGTGQL 211

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
             + ++M +L           PT E  +T+I R+ I +   LP  +      FR E    
Sbjct: 212 PKFEEDMFKLE---GLEYFLVPTAEVPVTNIHRNEILTADQLPIKYCAYTPCFRSEAGSA 268

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +   F L                  I   LGL    ++  +G +
Sbjct: 269 GRDTRGLVRQHQFNKVELVKFVLPENSYDELEKLTMD-AEEILQLLGLPYRRVKICTGDL 327

Query: 203 GGDLSHEF 210
           G   + +F
Sbjct: 328 GFTAAFKF 335


>gi|87310482|ref|ZP_01092611.1| histidyl-tRNA synthetase [Blastopirellula marina DSM 3645]
 gi|87286703|gb|EAQ78608.1| histidyl-tRNA synthetase [Blastopirellula marina DSM 3645]
          Length = 449

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D+   +A   + ++L   G  V      +++G Q   AD  GF + +I G + +++ K +
Sbjct: 358 DEQSLNAYLVLASQLRAAGIGVEIYPEAKKLGQQLKYADRRGFKIAIIAGDRELAEGKCQ 417

Query: 418 IKHRLTGIREDMSLEE----VINYASHRFSN 444
           +K+   G   D SL +    VI       ++
Sbjct: 418 VKNLAAGEATDESLADGAAAVITRIKEILAS 448



 Score = 42.0 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 5/124 (4%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   +LP      + +    ++     G   +  P L+ A++    G  D   ++M R  
Sbjct: 15  GFRDYLPEAMMPRERLIDAAKQVYRSYGFAPIDTPALEYAEVLSGKG-SDETDRQMYRFQ 73

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D   + +         +      H+      PF  Y +   +R E   R    R REF+ 
Sbjct: 74  DHGGRDVGLRFDLTVPLARFAAQHV-GTLGTPFKRYHVASVWRGENTQRG---RYREFMQ 129

Query: 158 KDAY 161
            D  
Sbjct: 130 CDFD 133


>gi|332878167|ref|ZP_08445896.1| histidine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683905|gb|EGJ56773.1| histidine--tRNA ligase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 451

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 61/422 (14%), Positives = 127/422 (30%), Gaps = 47/422 (11%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYGKEMLRLADRNDKAMIYG 107
           +   IR+  +  G   +  P+ ++ D        E  R                +     
Sbjct: 26  IINTIRDTFSTFGFQPIETPSFENYDTLMGKYGEEGDRLIFKILNSGDFTQGVKQEDWEA 85

Query: 108 PTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKF-------RDELRPRFGVMRSR-----EF 155
              +++   I    ++    +PF  Y +Q +        R +++P +   R +     EF
Sbjct: 86  KNPQKLTPQISEKALRYDLTVPFARYVVQHQAELTFPFKRYQIQPVWRADRPQKGRFREF 145

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMR------AESGPIGGDLSHE 209
              DA          +  + +++ +     +  G+                    D   +
Sbjct: 146 YQCDADVVGSNSLWQEVEFVQLYDAVFTALNLKGVTIKINNRKILSGFAEVIGESDKLID 205

Query: 210 FIVLADT----GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA--PYAATSDVH 263
           F V  D     GE  V            +            S  E+  A     ATS+V 
Sbjct: 206 FTVALDKLDKIGEEGVIKEMSERGINAAAIEKIKPIFGLKGSFTEKLAALSAILATSEVG 265

Query: 264 NEKLFDSLPENKRVSARGIE-----------VGHIFYFGTKYSLPMSATFK-GADGKDHY 311
            + + +     ++++A G++            G  +Y G  + +   A  + G+ G    
Sbjct: 266 CKGIEELTFVGEQIAALGLQTALLDLDVTLARGLNYYTGAIFEIAAPAGVQMGSIGGGGR 325

Query: 312 VQMGSYGIGAMRVVAAVIESSHD-----GKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
               +   G   +    I    D      + +          + ++ +   +        
Sbjct: 326 YDDLTSIFGLKGMSGIGISFGLDRIGLVMEELNLYPETLNSTVKILCLNFGNAEALQ-SM 384

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           K+  +L K G          +I  Q   A+  G P   I+G   +      +K+ LTG +
Sbjct: 385 KLLQQLRKEGKKAELYPEAAKIKKQMDYANKRGIPYVAIIGESELQKGTYILKNMLTGEQ 444

Query: 427 ED 428
           E+
Sbjct: 445 EE 446


>gi|312880090|ref|ZP_07739890.1| seryl-tRNA synthetase [Aminomonas paucivorans DSM 12260]
 gi|310783381|gb|EFQ23779.1| seryl-tRNA synthetase [Aminomonas paucivorans DSM 12260]
          Length = 424

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 70/204 (34%), Gaps = 13/204 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
            G +    +   + +      G +E++ P L ++     +G+   + +++ R +   +  
Sbjct: 168 WGARLERALTQFMLDRHTQNHGFLEIAPPYLVNSKTMRGTGQLPKFAEDLYRCS---NDD 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMRSREFLMKD 159
           +   PT E  MT++    I   + LP  +      FR E         G++R  +F   +
Sbjct: 225 LWLIPTAEVPMTNLHAGEILQEKELPLYYTAYTPCFRREAGTYGRDMKGMLRVHQFDKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                   +  +     +      I   L L    +   +G +G   +     E  + + 
Sbjct: 285 LVKLCRPEDSYEEL-ESLTRCAESILQDLELPFRTICLCTGDMGFSAAKTYDLEVWIPSQ 343

Query: 216 TGETQVFCSKDFMDFPIPSENTDF 239
               ++    +  DF     +T +
Sbjct: 344 NCYREISSCSNCEDFQSRRMDTRY 367


>gi|118587514|ref|ZP_01544938.1| seryl-tRNA synthetase [Oenococcus oeni ATCC BAA-1163]
 gi|118431965|gb|EAV38707.1| seryl-tRNA synthetase [Oenococcus oeni ATCC BAA-1163]
          Length = 439

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 67/207 (32%), Gaps = 11/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + +E  R G  E+  P + + +    +G++  +  +        +++M 
Sbjct: 181 GARLERAVYNFMLDEHRREGYTELLTPYMVTNESMYATGQFPKFVDD--AYEVGKNQSMT 238

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAY 161
             PT E  + +  R  +     LP     +   FR E         G++R  +F   +  
Sbjct: 239 MIPTAEVALVNWRRDEVLDESELPLYITALSPAFRQEAGAAGKDTRGLIRLHQFNKVEMV 298

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F    +               I  +L L    +R  +G +G   +     E        
Sbjct: 299 KFTKPEDSYNELEKMTVD-AENILQKLELPYHVIRLSTGDMGFGSAMTYDLEVWFPTQDK 357

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF     +  + D  +
Sbjct: 358 YREISSVSNDEDFQARRGHIQYRDSKT 384


>gi|332527970|ref|ZP_08404004.1| seryl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
 gi|332112544|gb|EGJ12337.1| seryl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 430

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 62/203 (30%), Gaps = 10/203 (4%)

Query: 9   PILQENPRDAEIASHKLML-RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGA 66
              +  P+D       L L                     +    +   + + Q    G 
Sbjct: 133 RTFEFTPKDHVDVGQPLGLDFDTGARLAGARFTFLRGPAARLHRALAQFMLDTQTQEHGY 192

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEML---RLADRNDKAMIYGPTHEEVMTDIFRSHIK 123
            E   P + + ++   +G+   + ++M    R  D   +      T E  +T+  R  I 
Sbjct: 193 TECWTPYIVNREVLEGTGQLPKFKEDMFWVLRGGDEEQREQYLISTSEIPLTNTVREQIL 252

Query: 124 SYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
               LP         FR E     R   G++R  +F   +       PE S  +  +M  
Sbjct: 253 DAAALPIKLTAHSPCFRSEAGSAGRDTRGMIRQHQFDKVEMVQIVR-PEDSDAALEQMVG 311

Query: 180 SYLRIFHRLGLKSIPMRAESGPI 202
               I  +L L    +   SG +
Sbjct: 312 HAEAILQKLELPYRVITLCSGDM 334


>gi|21242570|ref|NP_642152.1| histidyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|32130119|sp|Q8PLH2|SYH_XANAC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|21108029|gb|AAM36688.1| histidyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 478

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D+   D    I  RL   G +       ++IG QF  A   G    V+ G   ++   V 
Sbjct: 379 DETRLDDALDIARRLRIGGINTEVQMEPKKIGKQFQYAARAGIRFVVLAGDDELARGVVA 438

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +K  +   + D++ +E+ +         R +L
Sbjct: 439 VKDLVREQQFDVARDELASTLQVELEQARAML 470


>gi|269122820|ref|YP_003305397.1| seryl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
 gi|268314146|gb|ACZ00520.1| seryl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
          Length = 422

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 13/195 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           +G +    +   + +      G  E+  P L   D+ + +G+   + ++M ++     + 
Sbjct: 168 MGARLERALINFMLDVHTEEHGFTEILTPQLAKKDIMIGTGQLPKFEEDMYKIQ---GED 224

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+++   I     LP  F      FR E     R   G++R  +F   +
Sbjct: 225 LYLIPTAEVTLTNMYAGEILKEEELPKHFCGFTACFRQEAGSGGRDLKGLIRQHQFNKVE 284

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                   +  +     M     +I  +L L    +   +G +G   +     E  V + 
Sbjct: 285 MVKIVHPDKSYEEL-EHMTNCGEKILQKLNLPYRVLSLCTGDMGFSAAKTYDIEVWVPSQ 343

Query: 216 TGETQVFCSKDFMDF 230
               ++    +  DF
Sbjct: 344 NKYREISSCSNTEDF 358


>gi|212637862|ref|YP_002314382.1| seryl-tRNA synthetase [Anoxybacillus flavithermus WK1]
 gi|212559342|gb|ACJ32397.1| Seryl-tRNA synthetase [Anoxybacillus flavithermus WK1]
          Length = 426

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 8/139 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +    + G  E+  P + +      +G+   + ++  R+ 
Sbjct: 165 FVFYKGLGARLERALINFMLDVHVEQHGYEEVLPPYIVNRASMTGTGQLPKFEEDAFRIE 224

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                     PT E  +T++ R  I S  +LP  +      FR E     R   G++R  
Sbjct: 225 SE---DYFLIPTAEVPVTNLHRDEILSADDLPIKYAAYSACFRSEAGSAGRDTRGLIRQH 281

Query: 154 EFLMKDAYSFDLTPEGSKH 172
           +F   +   F    +  + 
Sbjct: 282 QFNKVELVKFVKPEDSYEE 300


>gi|254413141|ref|ZP_05026913.1| seryl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196180305|gb|EDX75297.1| seryl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 427

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 70/193 (36%), Gaps = 12/193 (6%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      + + + + Q   G +E+  P L ++     +G+   + +E  +    +   + 
Sbjct: 176 GAALERALISFMLDRQIAAGYVEVIPPILINSRSLTATGQLPKFAEESFKC---DSDDLW 232

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+++R  I     LP         FR E     R   G++R  +F   +  
Sbjct: 233 LSPTAEVPLTNLYRDEILDASQLPIYHCAYTPCFRREAGSYGRDTKGLIRLHQFNKVELV 292

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                P  S+  + K+  +   I   L L    +   +G +G   +     E  + +   
Sbjct: 293 KIVH-PSTSEAEHEKLVENAAAILEALKLPYRVIELCTGDLGFSATKCYDLEVWLPSSGK 351

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 352 YREISSCSNCGDF 364


>gi|282877888|ref|ZP_06286697.1| serine--tRNA ligase [Prevotella buccalis ATCC 35310]
 gi|281299889|gb|EFA92249.1| serine--tRNA ligase [Prevotella buccalis ATCC 35310]
          Length = 429

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 77/221 (34%), Gaps = 10/221 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   EE  ++G +E+  P + +      +G+      +M  
Sbjct: 164 GAGFPLYIGKMARFQRALEAFFLEEARKSGYLEVQPPFVVNQASGYGTGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+IFR  I   ++LP         FR E     +   G+ R
Sbjct: 223 --HVQLDDLYLIPTAEVPVTNIFRDEILDEKDLPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHE 209
             +F   +    D  PE S  S N+M      +  +L L    ++   G +     + ++
Sbjct: 281 LHQFDKVEIVRIDK-PEHSYESLNEMLEHVEGLCKKLELPYHILKLCGGDMSFTSSICYD 339

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           F V +   +  +  S         +         + +  +E
Sbjct: 340 FEVWSAAQKRWLEVSSVSNFESYQANRLKCRYRHAEDGKIE 380


>gi|21226967|ref|NP_632889.1| seryl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|30173179|sp|Q8PYJ6|SYS_METMA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|20905281|gb|AAM30561.1| Seryl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 422

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 75/238 (31%), Gaps = 21/238 (8%)

Query: 14  NPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            P+        L +    R   I    +G   +  +G K    +   + +   R G +E+
Sbjct: 136 TPKPHWEIGESLDILDFERAAKI--SGQGFAVYKGMGAKLERALINFMLDVHTRQGYLEV 193

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P L +      +G+   +  +M    D         PT E  +T++F        NLP
Sbjct: 194 FPPVLINEKAMTGTGQLPKFKDDMYGCTDG----FYLAPTAEVPVTNLFMDEY--MENLP 247

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E     +   G++R+ +F   +   F +     +            I 
Sbjct: 248 VFLTAYTACFRREAGKHGQDTRGIIRNHQFNKVELVKFVMPETSYEELEKLTLD-AEEIL 306

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L L    +   +G +G   +     E  V       ++    +F +F     N  +
Sbjct: 307 KLLKLPYRVVSLCTGDLGFSAAKTYDLEVWVPTQEKYREISSCSNFDNFQARRANIRY 364


>gi|152992944|ref|YP_001358665.1| histidyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
 gi|166228623|sp|A6Q9Z9|SYH_SULNB RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|151424805|dbj|BAF72308.1| histidyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
          Length = 403

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 61/394 (15%), Positives = 109/394 (27%), Gaps = 42/394 (10%)

Query: 62  NRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
            R G   +  P L+   L+  S     D   KEM +  D+    +   P     +   F 
Sbjct: 31  KRYGYSYIETPILEETALFKRSVGDSSDIVSKEMYQFEDKGGNDVCMRPEGTAGVVRAFI 90

Query: 120 SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFV 179
           S     + +   FY     FR E   +    R REF      SF         +   M  
Sbjct: 91  SAKLDRQPVKQKFYYYGPMFRYERPQKG---RLREFHQFGCESFGEASVYEDFTIIIMIS 147

Query: 180 SYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCSKDFMDFPIPSENTD 238
              +         I        +     +    L +  E     C++     PI   +  
Sbjct: 148 QIFQALGIGFELKINSLGCPECMPPYRQNLVGFLTEISEDLCTDCNRRIGMNPIRVLDCK 207

Query: 239 FDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSA------RGIEV--GHIFYF 290
            +   SL     +         D   +KL   L +            RG++      F F
Sbjct: 208 NEACQSLLKQSPKLIENLCEHCDTDFKKLTVLLDDAGIAYEVDTNLVRGLDYYNKTAFEF 267

Query: 291 -----GTKYSLPMSATF--KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDS 343
                G++ ++     +                + IG  R++  V       +G      
Sbjct: 268 VSNEIGSQSAIAGGGRYDKLVEYLDGKPTPAVGFAIGIERIMELVQMPETKKEGYYMGAM 327

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF---WDDMGEQIGSQFAVADLLGF 400
           +      +I +       + A +K+    S  G        D    +             
Sbjct: 328 IPEAIEKIIMLGNR----KRATDKVTVEYSSKGFKSHMKGVDKANAR------------- 370

Query: 401 PLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
              +++G   + +  V +K   T   + + L EV
Sbjct: 371 -YALLIGEDELKNGTVWLKDLETKEEKSILLSEV 403


>gi|81429415|ref|YP_396416.1| seryl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
 gi|123563655|sp|Q38UM4|SYS_LACSS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78611058|emb|CAI56111.1| Seryl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
          Length = 424

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 8/222 (3%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
                  +   G +    V   + ++  + G  EM  P L + +    +G++  + +++ 
Sbjct: 159 SGSRFVYYKGAGARLERAVYNFMLDQHAKEGYEEMITPYLVNGESMFGTGQFPKFTEDVY 218

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
            +     + M   PT E  +T+ +R  I     LP  F  +   FR E     R   G++
Sbjct: 219 TMT-NEGEPMTLIPTAEVPLTNFYRDEILDGAQLPIYFTALSPAFRSEAGSAGRDTRGLI 277

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFV--SYLRIFHRLGLKSIPMRAE-SGPIGGDLS 207
           R  +F   +   F    E             + L+  +           + S        
Sbjct: 278 RMHQFNKVEMVKFTKPEESFNELEKMTADAENILKALNLPYHVITLATGDASFTSAKTYD 337

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            E  + A     ++    D  DF        + D     ++V
Sbjct: 338 IEVWLPAQNTYREISSCSDCTDFQARRAQIRYRDEDGHVNLV 379


>gi|282164416|ref|YP_003356801.1| seryl-tRNA synthetase [Methanocella paludicola SANAE]
 gi|282156730|dbj|BAI61818.1| seryl-tRNA synthetase [Methanocella paludicola SANAE]
          Length = 421

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 76/238 (31%), Gaps = 21/238 (8%)

Query: 14  NPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEM 69
            P++       L +    R   I    +G   +  +G K    +   + +  +R G  E+
Sbjct: 136 TPKNHWDIGEDLDILDFKRAVKI--SGEGFTVYKGMGAKLERALINFMLDVHSRQGYTEV 193

Query: 70  SVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLP 129
             P L +      +G+   + ++M    D         PT E  +T+++        NLP
Sbjct: 194 FPPVLMNEKAMTGTGQLPKFKEDMYACTDG----YYLAPTAEVPVTNLYMDEYL--ENLP 247

Query: 130 FTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIF 185
                    FR E     +   G++R  +F   +   F L     +            I 
Sbjct: 248 IYLTAYTACFRREAGKHGQDTRGIIRQHQFNKVELVKFSLPETSYEEHEKLTRD-AEEIL 306

Query: 186 HRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             L L    +   +G +G   +     E  V A     ++    +F  +     N  +
Sbjct: 307 QLLKLPYRVINLCTGDLGFSAAKTYDIEVWVPAQGKYREISSCSNFESYQARRANIRY 364


>gi|327475188|gb|AEA77189.1| seryl-tRNA synthetase [Exiguobacterium sp. EPVM]
          Length = 427

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 74/212 (34%), Gaps = 15/212 (7%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRY 86
           R G +         +  LG +    +   + +   +  G  E+  P + + D    +G+ 
Sbjct: 154 RAGKV--TGSRFVFYKGLGARLERALINFMMDMHADEHGYSEVLPPYMVNRDAMTGTGQL 211

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
             + ++  ++AD N       PT E  +T++ R  I +   LP T+      FR E    
Sbjct: 212 PKFEEDAFKVADTN---YFLVPTAEVPVTNMHRDEIIAEDQLPITYTAYSACFRSEAGSA 268

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +   F    E        +      +  RLGL    +   +  +
Sbjct: 269 GRDTRGLIRQHQFNKVELVRFVKPEESY-EQLELLTGHAEEVLKRLGLPYQVLSMCTADL 327

Query: 203 ----GGDLSHEFIVLADTGETQVFCSKDFMDF 230
                     E  + A     ++    +F DF
Sbjct: 328 GFTAAKKYDIEVWMPAQGMYREISSCSNFEDF 359


>gi|71065249|ref|YP_263976.1| histidyl-tRNA synthetase [Psychrobacter arcticus 273-4]
 gi|83305876|sp|Q4FTW6|SYH_PSYA2 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|71038234|gb|AAZ18542.1| histidyl-tRNA synthetase [Psychrobacter arcticus 273-4]
          Length = 442

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 63/423 (14%), Positives = 122/423 (28%), Gaps = 47/423 (11%)

Query: 53  VNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTH 110
           + +I+ +   R G   + +P ++  DL+  +  G  D   KEM    D++D         
Sbjct: 22  LESILADVLGRYGYEHIRLPIVEQTDLFARAIGGATDIVEKEMYSFTDKSDPPTPLTLRP 81

Query: 111 EEVMTDIFR-SHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLT--- 166
           E     +   +     R      + I   FR E   +    +  +  ++   S       
Sbjct: 82  EGTAGAVRAVNEHNLLRGDTPKLWYIGPMFRYERPQKGRYRQFHQLGVESFGSALPDADA 141

Query: 167 ---------------------------PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
                                          +H+Y +  V+YL        +    R  +
Sbjct: 142 ELIAMTHLMWQELGLKDEMRLQLNSLGERDERHAYREALVTYLTDKQEQLDEDSKRRLTT 201

Query: 200 GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSEN--TDFDDIISLNSIVEQWTAPYA 257
            P+    S E    A   +     +    +     E   T   ++     I         
Sbjct: 202 NPLRILDSKEASTQALLIDAPKLANFLGEESVAHFEQVQTYLTELGIDFEINPHLVRGLD 261

Query: 258 ATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
             +    E + D L     V A G   G +    +  +    A  K     D        
Sbjct: 262 YYNKTVFEWVTDKLGSQATVCAGGRYDGLVGQLKSIDTRDAKADAKADAKADSKPVKSEP 321

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD---ACEKIYARLSK 374
            +G    +  ++        I      A      + + AH +V        + +    S+
Sbjct: 322 AVGFAMGLERLLLLIDAVAPI------ADIPACDVFVVAHPEVYSAGIGYAQNLRY--SR 373

Query: 375 VGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
               V        + +Q   AD  G  L VI+  + + D  + IK   TG ++  + + +
Sbjct: 374 PDLRVKM-ASATSLKAQMKKADKSGAALTVIIAQQEIDDKTISIKDMQTGEQKTAAQDWL 432

Query: 435 INY 437
            + 
Sbjct: 433 SDK 435


>gi|326794640|ref|YP_004312460.1| Seryl-tRNA synthetase [Marinomonas mediterranea MMB-1]
 gi|326545404|gb|ADZ90624.1| Seryl-tRNA synthetase [Marinomonas mediterranea MMB-1]
          Length = 432

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 70/207 (33%), Gaps = 13/207 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR---LADRNDK 102
            +    +   +     +  G  E+ VP L +A     +G+   + K++ +     D  + 
Sbjct: 172 ARLHRALTQFMINTHADEHGYSEVYVPYLVNAHSLKGTGQLPKFEKDLFKVPVDKDSGNS 231

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
            +   PT E  +T+I R  I +  +L   +      FR E     R   G++R  +F   
Sbjct: 232 DLYLIPTAEVPVTNIARDEIFNDSDLHHKYVAHTPCFRSEAGSYGRDTRGMIRQHQFEKV 291

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +       P+ S     ++      I  +LGL    +    G +G         E  +  
Sbjct: 292 ELVHICR-PDRSTEILEELVGHAETILQKLGLPYRTVILCGGDLGFSAHKTYDIEVWLPG 350

Query: 215 DTGETQVFCSKDFMDFPIPSENTDFDD 241
                ++    +  DF        + +
Sbjct: 351 QGKYREISSCSNMWDFQARRMQARWRN 377


>gi|301054818|ref|YP_003793029.1| histidyl-tRNA synthetase 1 [Bacillus anthracis CI]
 gi|300376987|gb|ADK05891.1| histidyl-tRNA synthetase 1 [Bacillus cereus biovar anthracis str.
           CI]
          Length = 425

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/430 (16%), Positives = 132/430 (30%), Gaps = 47/430 (10%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             +A+            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRALALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ++  I  +L+ + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILQAINIPTELTSDVILS 185

Query: 214 ADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            D  E        KD ++  I  E  D      L+ +              +N  + D +
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLQLSIADF---KEAFNNSLVADGV 242

Query: 272 PENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            E +++       GI    IF       L M                 S G G  R    
Sbjct: 243 NELQQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGG-RYDNI 301

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLSK- 374
           +     D              +    +   + +   A            C +I  +L   
Sbjct: 302 IGAFRGDDMSYPTVGISFGLDVIYTALAQKETISSTADVFIIPLGTELQCLQIAQQLRST 361

Query: 375 --VGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +  ++         G +   A    +    P  +I+G + +S     +++   G    
Sbjct: 362 TSLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTETAMLRNMKEGSEVK 415

Query: 429 MSLEEVINYA 438
           + L  + NY 
Sbjct: 416 VLLSSLSNYL 425


>gi|288554619|ref|YP_003426554.1| seryl-tRNA synthetase [Bacillus pseudofirmus OF4]
 gi|288545779|gb|ADC49662.1| seryl-tRNA synthetase [Bacillus pseudofirmus OF4]
          Length = 424

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 69/209 (33%), Gaps = 11/209 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +  Q+  G  E+  P + +      +G+   + ++  ++ 
Sbjct: 163 FVFYKGLGARLERALMNFMMDLHQDEHGYEEVLPPYMVNRTSMTGTGQLPKFEEDAFKI- 221

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              ++     PT E  +T++ R  I     LP  +      FR E     R   G++R  
Sbjct: 222 --REEDYFLIPTAEVPVTNMHRDEILQADQLPIAYTAFSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSK--HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-EF 210
           +F   +   F    +  +   +        L++            A+ G         E 
Sbjct: 280 QFNKVELVRFVKPEDSYQELENLTGHAEKVLQLLELPYRVMSMCTADLGFTAAKKYDIEV 339

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDF 239
            + +     ++    +F DF     N  F
Sbjct: 340 WIPSYDSYREISSCSNFEDFQARRANIKF 368


>gi|114800440|ref|YP_760631.1| seryl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
 gi|123027986|sp|Q0C0W2|SYS_HYPNA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|114740614|gb|ABI78739.1| seryl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
          Length = 432

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 74/248 (29%), Gaps = 21/248 (8%)

Query: 9   PILQENPRDAEIASHKLMLRTGMI--------HQHSKGIYSWLPLGQKALDNVNAIIREE 60
           P L  +P+D       L  + G                  +      +    +   + + 
Sbjct: 133 PKLINDPKDHADLGEALKGQGGFPMMDFEAAARMSGARFVALRGKLTRLERALANFMLDL 192

Query: 61  QN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFR 119
           Q    G  EMSVP L        +G+   + +++ R            PT E  +T++ R
Sbjct: 193 QTTEHGYEEMSVPVLVRDQALYGTGQLPKFAEDLFRTT----VDHWLTPTAEVSLTNLVR 248

Query: 120 SHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYN 175
             I     LP  F      FR E     R   G++R  +F   +  S             
Sbjct: 249 EQILDAAQLPLRFTAHTPCFRSEAGSAGRDTKGMIRQHQFNKVELVSIVANEAEGLAELE 308

Query: 176 KMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFP 231
           +M      +  RL L    M   +G +G         E  + +     ++       DF 
Sbjct: 309 RMTGCAEEVLKRLELPFRRMLLCTGDMGAGARKTYDLEVWLPSQNTYREISSCSYCGDFQ 368

Query: 232 IPSENTDF 239
               +  +
Sbjct: 369 ARRMDARY 376


>gi|302837658|ref|XP_002950388.1| hypothetical protein VOLCADRAFT_90716 [Volvox carteri f.
           nagariensis]
 gi|300264393|gb|EFJ48589.1| hypothetical protein VOLCADRAFT_90716 [Volvox carteri f.
           nagariensis]
          Length = 522

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 45/148 (30%), Gaps = 2/148 (1%)

Query: 303 KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
               GK      GS   G  R     +     G        V    I   N K       
Sbjct: 106 VSESGKRRQQLEGSGKGGEDRKGRHYLGDKTPGWRPFSSVEVIVLPIFWNNNKEEKTAVL 165

Query: 363 DACEKIYARLSKVGCDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHR 421
            A E+    L+  G     D   +   G +    + +G  ++V +G + V++    +   
Sbjct: 166 AASERARDILASAGLSADMDASNKYTPGQKMKYWETMGVRVRVELGPRDVANGNC-VVAL 224

Query: 422 LTGIREDMSLEEVINYASHRFSNNRPVL 449
            T    +++ + V+N         R  L
Sbjct: 225 STKAPGEVATKNVVNMRHKMLDAVRAAL 252


>gi|218262762|ref|ZP_03477120.1| hypothetical protein PRABACTJOHN_02799 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223164|gb|EEC95814.1| hypothetical protein PRABACTJOHN_02799 [Parabacteroides johnsonii
           DSM 18315]
          Length = 424

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 82/245 (33%), Gaps = 17/245 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  L      +     G   +   G +    +     +E  ++
Sbjct: 133 METELPKDALPHWELAKKYDLIDFDLGVKITGAGFPVYKGQGAQLQRALINFFLDEARKS 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PT+ +A     +G+      +M          +   PT E  +T+I+R  I  
Sbjct: 193 GYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCE---VDDLYLIPTAEVPVTNIYRDVILD 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M   
Sbjct: 250 EKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRIDK-PEHSKQSHQEMLDH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPIGG----DLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              +  +L L    +R   G +          E    A     +V    +F ++      
Sbjct: 309 VEGLLQKLELPYRILRLCGGDMSFTAALCFDFEVYSEAQKRWLEVSSVSNFDNYQANRLK 368

Query: 237 TDFDD 241
             + D
Sbjct: 369 CRYRD 373


>gi|119510137|ref|ZP_01629276.1| tRNA synthetase, class II (G, H, P and S) [Nodularia spumigena
           CCY9414]
 gi|119465198|gb|EAW46096.1| tRNA synthetase, class II (G, H, P and S) [Nodularia spumigena
           CCY9414]
          Length = 455

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 67/206 (32%), Gaps = 10/206 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + + Q   G +E+S P L + D    +G+   + +E  + AD     + 
Sbjct: 204 GAALERALIQFMLKTQTEAGYVEVSPPLLVNTDALTGTGQLPKFAEESFKCAD---DELW 260

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMRSREFLMKDAY 161
             PT E  +T+++R  I +   LP         FR E         G++R  +F   +  
Sbjct: 261 LIPTAEVPVTNLYRGEILAAEELPIYHCAYTPCFRREAGSYGRDMRGLIRLHQFNKVELV 320

Query: 162 SFDLTPEGSKHSYNKMF--VSYLRIFHRLGLKSIPMRAESGPIGGDLSH-EFIVLADTGE 218
                    +     +    + L+             A+ G         E  + +    
Sbjct: 321 KVVHPSSSFEELEKLVVNAEAILQALKLPYRVINLCTADLGFGATKTYDLEVWLPSSGKY 380

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIIS 244
            ++    + +DF     +  F +   
Sbjct: 381 REISSCSNCVDFQARRADIRFKEAGK 406


>gi|255690243|ref|ZP_05413918.1| histidine--tRNA ligase [Bacteroides finegoldii DSM 17565]
 gi|260624263|gb|EEX47134.1| histidine--tRNA ligase [Bacteroides finegoldii DSM 17565]
          Length = 453

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 5/128 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ I   ++        I +++ 
Sbjct: 329 FGMAGVSGVGISFGADRIFDVLNQLDLYPKEAVNGTELLFINFGEKEA-AFSMGILSKVR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G       D    ++  Q + A+    P   IVG   +++ K  +K+  TG +  +S 
Sbjct: 388 AAGIRAEIFPDT--AKMKKQMSYANAKNIPFVAIVGENEMNEGKAMLKNMETGEQNLVSA 445

Query: 432 EEVINYAS 439
           EE+I    
Sbjct: 446 EELIAAIR 453


>gi|307181811|gb|EFN69254.1| Histidyl-tRNA synthetase, cytoplasmic [Camponotus floridanus]
          Length = 498

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 60/495 (12%), Positives = 126/495 (25%), Gaps = 66/495 (13%)

Query: 1   MRRSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWL----PLGQK-------- 48
           M  S          P+ AE  S  L L+  + ++   G    L    P G +        
Sbjct: 20  MLMST--------TPQIAEEVSKLLDLKAQLENREENGCSHKLILKTPKGTRDYNPEQMA 71

Query: 49  ----ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
                L+ + ++      R GA  +  P  +  D+   +G+Y    K +  L D+  + +
Sbjct: 72  LRLGVLEKIISV----FKRHGAETIDTPVFELKDVL--TGKYGEDSKLIYDLKDQGGEIL 125

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY--- 161
                           +  S           +       + R+      +F +   Y   
Sbjct: 126 ALRYDLTVPFARYLAMNKISSIKRYHIAKVYRRDNPATTKGRYREFYQCDFDIAGQYDPM 185

Query: 162 ---------------SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
                            DL     K ++  +             K   + +    +    
Sbjct: 186 LPDAECIRVMSEALQMLDLESYLIKVNHRSLLDGIFAACGVPQSKFRSICSAVDKLDKSP 245

Query: 207 SHEFIVLA--DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA---------- 254
             E       + G  +    K               ++     ++ Q  A          
Sbjct: 246 WEEVKKEMIEEKGLDEHIADKIGNYVSQSGGIELITELRKDKELMRQSAAVQGLDSMELL 305

Query: 255 -PYAATSDVHNEKLFD-SLPENKRVSARGIEVGHIFYFGTKY-SLPMSATFKGADGKDHY 311
             Y +   V ++  FD SL          I    +   G    S+     +    G    
Sbjct: 306 LKYCSIYKVLDKIKFDLSLARGLDYYTGVIYEAVLCGDGIDVGSIAGGGRYDNLVGMFDN 365

Query: 312 VQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYAR 371
                  +G    V  +                       + + +  +   +   KI   
Sbjct: 366 KNKNVPCVGVSLGVERIFSVLEARLANKGLK--TRTNEIEVFVASAQKNLHEPRMKILVD 423

Query: 372 LSKVGCDVF-WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMS 430
           L + G           ++ +Q    +    PL +I+G   ++  +V ++   +     +S
Sbjct: 424 LWEAGVKAEQSYKKNAKLLAQLQHCEENKIPLAIIIGESELAKGEVTLRIVSSREEIRVS 483

Query: 431 LEEVINYASHRFSNN 445
              +I         +
Sbjct: 484 RSNLIEEIRKLLKTS 498


>gi|118497244|ref|YP_898294.1| seryl-tRNA synthetase [Francisella tularensis subsp. novicida U112]
 gi|194323546|ref|ZP_03057323.1| seryl-tRNA synthetase [Francisella tularensis subsp. novicida FTE]
 gi|166222726|sp|A0Q5M5|SYS_FRATN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|118423150|gb|ABK89540.1| seryl-tRNA synthetase [Francisella novicida U112]
 gi|194322401|gb|EDX19882.1| seryl-tRNA synthetase [Francisella tularensis subsp. novicida FTE]
          Length = 426

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 68/204 (33%), Gaps = 12/204 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            K    ++  + +    + G  E+ VP L + D    +G+   +  ++ +L    D    
Sbjct: 172 AKLHRALSQFMLDLHTEKHGYEELYVPYLVNNDSLYGTGQLPKFAADLFKLE--GDFEYS 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVPITNLVRDEILDTETLPRYYTAHTPCFRSEAGSYGRDTKGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                 +  + S   +     ++  +L L    M+  +G +          E  + +   
Sbjct: 290 HITAADK-GEESLELLTSHAEKVLQKLNLPYRVMKLCTGDMSFSAKKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++       DF          +
Sbjct: 349 YREISSCSWCGDFQARRMKARHKN 372


>gi|330813611|ref|YP_004357850.1| histidyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486706|gb|AEA81111.1| histidyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 478

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 72/479 (15%), Positives = 130/479 (27%), Gaps = 94/479 (19%)

Query: 43  LPLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
           LP G            D + + I++  ++ G   +  P+      +  +     +  +  
Sbjct: 12  LPNGFTDRQEEELLIRDLLISNIKKIMSKYGFQYLETPS------FEYTDSIGKFLPDKD 65

Query: 95  RLAD------RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFG 148
           R ++         K +         +      +  S    PF  +Q+   +R+E   + G
Sbjct: 66  RPSEGVFSFEDEKKWLSLRYDLTAPLARYAAKNFDSLPR-PFKRFQLGTVWRNE---KPG 121

Query: 149 VMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
             R REFL  DA     +   S      +    L+    LG     ++  +  +   L  
Sbjct: 122 PGRFREFLQFDADYIGTSNLFSDAELCFLISEILKSCG-LGTSEFNIKISNRKLSKGLLE 180

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSE------NTDFDDIISLNSIVEQWTAPYAATSDV 262
           +  +  +  ++    + D +D                D         E   A      + 
Sbjct: 181 KLNITDEQKQSITLRAIDKLDRVGAEGVQYLLGKGRKDKSGDFTKGAELEEAQIKEIINF 240

Query: 263 -------------------HNEKLFDSLPENKRVSA-----------------RGIEV-- 284
                               NE + D + E + +                   RG+E   
Sbjct: 241 LNIKNLSEKNFERIREIAADNESMNDGIKELELMEKYFSLFNFTNYIFDPTVVRGLEYYT 300

Query: 285 GHIFY----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW 340
           G IF     FG K +      F G+ G                  +  I    D      
Sbjct: 301 GPIFEANLTFGVKNNKGQEIEF-GSVGGGGRYDDLVKRFNNQDCPSTGISVGLDRLIYAI 359

Query: 341 PDSVAPFKISLIN--IKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLL 398
                          I   D+   D   KI   L               I SQF  AD  
Sbjct: 360 LQKNTIKAEKKSPVLICVFDEKYMDFYIKILNMLRSENISAEIYSGSSNIKSQFKYADKR 419

Query: 399 GFPLQVIVGSKFVSDSKVEIKHRL------------------TGIREDMSLEEVINYAS 439
           G    ++ G   VS + V IK+                    T  ++ ++ ++++N   
Sbjct: 420 GCDFVILCGDDEVSKNVVTIKNLNIGKQMSENIKDRSEWKQSTDAQKTVAFDQLLNEIK 478


>gi|325298974|ref|YP_004258891.1| Histidyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
 gi|324318527|gb|ADY36418.1| Histidyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
          Length = 454

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 363 DACEKIYARLSKVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                I A++ + G       D    ++  Q + A+    P   I G   + + K+ +K+
Sbjct: 377 AYVLPILAKVREAGIRAEIFPDAS--KMKKQMSYANAKAIPFVAIAGENEMQEGKLTLKN 434

Query: 421 RLTGIREDMSLEEVINYAS 439
             TG +  ++ +E+I    
Sbjct: 435 MTTGEQHLVTPDELIATVK 453


>gi|327270319|ref|XP_003219937.1| PREDICTED: histidyl-tRNA synthetase, cytoplasmic-like [Anolis
           carolinensis]
          Length = 503

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/487 (11%), Positives = 139/487 (28%), Gaps = 54/487 (11%)

Query: 7   FLPILQENPRD----AEIASHKLMLRT---------GMIHQHSKGIYSWLPLGQKALDNV 53
            +  L++        AE  +  L ++            + +  KG   + P      + V
Sbjct: 14  LVRRLKQEKASQEEIAEQVAKLLEMKATICPEDGKHKFVLKTPKGTRDYSPKQMAIRERV 73

Query: 54  NAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEV 113
            +II     R GA  +  P  +  +    +G+Y    K +  L D+  + +         
Sbjct: 74  FSIIINCFKRHGAETIDTPVFELKETL--TGKYGEDSKLIYDLKDQGGELLSLRYDLTVP 131

Query: 114 MTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHS 173
                  +  +           +       R R+      +F +   Y   +        
Sbjct: 132 FARYLAMNKITNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQYDAMIPDAECLKI 191

Query: 174 YNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIP 233
            +++  +      R+ +    +      + G    +F  +  T +     S + +   + 
Sbjct: 192 VHEILSALQIGDFRIKVNDRRILDGMFAVCGVPDSKFRTICSTVDKLDKMSWEDVKNEMV 251

Query: 234 SENTDFDDIISLNSIVEQWTAPYAATSD-------VHNEKLFDSLPENKRVSA------- 279
           SE     +I        +     +           + N++  + L E K +         
Sbjct: 252 SEKGLSPEIADNIGGYVKLHGGLSQIEQLLHDPKLMQNKQAMEGLGEMKLLFEYLALFGI 311

Query: 280 -----------RGIEVGH-------IFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
                      RG++          +      ++         A G  +   +G +    
Sbjct: 312 SDQVSFDLSLARGLDYYTGVIYEAVLLQQQNDHTEESVGVGSVAGGGRYDGLVGMFDPKG 371

Query: 322 MRVVAAVIESSHDGKGIIW------PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
            +V    +    +    I        +       + + + +  +   +   K+ + L   
Sbjct: 372 RKVPCVGVSIGIERIFSIMEQKVEASEEKIRTTETQVLVASAQKKLLEERLKLVSELWDS 431

Query: 376 GCDVF-WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEV 434
           G           ++ +Q    +  G PL  I+G + + D  V+++   T    D+   ++
Sbjct: 432 GIKAEMLYKKNPKLLNQLQYCEETGIPLVAILGEQELKDGVVKLRDVATREEVDICRGKL 491

Query: 435 INYASHR 441
           +     R
Sbjct: 492 VEEIKRR 498


>gi|154494911|ref|ZP_02033916.1| hypothetical protein PARMER_03955 [Parabacteroides merdae ATCC
           43184]
 gi|154085461|gb|EDN84506.1| hypothetical protein PARMER_03955 [Parabacteroides merdae ATCC
           43184]
          Length = 424

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 82/245 (33%), Gaps = 17/245 (6%)

Query: 10  ILQENPRD---AEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRT 64
           +  E P+D       + K  L      +     G   +   G +    +     +E  ++
Sbjct: 133 METELPKDALPHWELAKKYDLIDFDLGVKITGAGFPVYKGQGAQLQRALINFFLDEARKS 192

Query: 65  GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124
           G  E+  PT+ +A     +G+      +M          +   PT E  +T+I+R  I  
Sbjct: 193 GYTEIMPPTVVNAASGYGTGQLPDKEGQMYHCE---VDDLYLIPTAEVPVTNIYRDVILD 249

Query: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
            + LP         FR E     +   G+ R  EF   +    D  PE SK S+ +M   
Sbjct: 250 EKQLPIKNCAYTQCFRREAGSYGKDVRGLNRLHEFSKVELVRIDK-PEHSKQSHQEMLDH 308

Query: 181 YLRIFHRLGLKSIPMRAESGPIGG----DLSHEFIVLADTGETQVFCSKDFMDFPIPSEN 236
              +  +L L    +R   G +          E    A     +V    +F ++      
Sbjct: 309 VEGLLQKLELPYRILRLCGGDMSFTAALCFDFEVYSEAQKRWLEVSSVSNFDNYQANRLK 368

Query: 237 TDFDD 241
             + D
Sbjct: 369 CRYRD 373


>gi|154148607|ref|YP_001406486.1| histidyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
 gi|166227957|sp|A7I1U5|SYH_CAMHC RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|153804616|gb|ABS51623.1| histidyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
          Length = 410

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/403 (14%), Positives = 110/403 (27%), Gaps = 18/403 (4%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAM 104
            K    +  +  +   + G   + +P L+   L+  S     D  GKEM +  D++   +
Sbjct: 16  AKLYKKIIDVCEDTAKKYGYEYIEIPKLEETALFKRSVGESSDIVGKEMYQFTDKSGNDV 75

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFD 164
              P     +   F  H          ++     FR E   +    R REF       F 
Sbjct: 76  CLRPEGTAGVVRAFIEHKMDRAGGVKKYFYHGSMFRYERPQKG---RLREFHQFGIECFS 132

Query: 165 LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFIVLADTGETQVF 222
                   S   M    L+         I      +  P   +   +F+   +  E    
Sbjct: 133 EGSVYEDASVILMLSEILKKLDIEATLKINSLGDGDCMPKYREKLLKFLKENE-NELCSD 191

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP------ENKR 276
           C +     PI   +   +    +       T            KL + L       E   
Sbjct: 192 CKRRISTNPIRVLDCKVEHCQKILQNAPLITENLNEICAGEFSKLQEILTANGVTFEVDP 251

Query: 277 VSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGK 336
              RG++      F        S +  G  G+   +     G     V  A+        
Sbjct: 252 KLVRGLDYYTKTAFEFVSGEIGSQSAVGGGGRYDNLVAFLGGRPTFGVGFALGIERFMEI 311

Query: 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVAD 396
                       I +  +        D   KI   L      V      + +      AD
Sbjct: 312 LSSKESKQKRVGIYICALDKK---YIDKIFKIGIDLR-RNFKVEISYEAKNLQKHLKNAD 367

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
                + + +G     + ++ +K+ +    +++ + E++    
Sbjct: 368 NKNAEIFLCMGENEAKNDELFMKNLIAKTNKNIKIAEILKEIR 410


>gi|34540153|ref|NP_904632.1| seryl-tRNA synthetase [Porphyromonas gingivalis W83]
 gi|34396465|gb|AAQ65531.1| seryl-tRNA synthetase [Porphyromonas gingivalis W83]
          Length = 423

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 70/192 (36%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E    G  E+  P + + D    +G+      +M  
Sbjct: 163 GAGFPVYKGKGARLQRALVNFFLDEARNAGFTEIEPPYVVNEDSGYGTGQLPDKEGQMYH 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           +   N   +   PT E  +T+IFR  I S   LP         FR E     +   G+ R
Sbjct: 223 VTADN---LYLIPTAEVPVTNIFRDVILSEDELPILLTAYSACFRREAGSYGKDVRGLNR 279

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHE 209
             +F   +    D  PE S    ++M      +  +LGL    +R   G I     L+++
Sbjct: 280 LHQFNKVEIVCIDK-PEHSYEQLDQMVGYVQGLVDKLGLPWRILRLCGGDISFTSALTYD 338

Query: 210 FIVLADTGETQV 221
           F V +   E  +
Sbjct: 339 FEVYSAAQERWL 350


>gi|208779037|ref|ZP_03246383.1| seryl-tRNA synthetase [Francisella novicida FTG]
 gi|208744837|gb|EDZ91135.1| seryl-tRNA synthetase [Francisella novicida FTG]
 gi|328676733|gb|AEB27603.1| Seryl-tRNA synthetase [Francisella cf. novicida Fx1]
          Length = 426

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 69/204 (33%), Gaps = 12/204 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            K    ++  + +    + G  E+ VP L + D    +G+   +  ++ +L    D    
Sbjct: 172 AKLHRALSQFMLDLHTEKHGYEELYVPYLVNNDSLYGTGQLPKFAADLFKLE--GDFEYS 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I     LP  +      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVPITNLVRDEILDTETLPRYYTAHTPCFRSEAGSYGRDTKGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                 +  + S   +     ++  +L L    M+  +G +G         E  + +   
Sbjct: 290 HITAADK-GEESLELLTSHAEKVLQKLNLPYRVMKLCTGDMGFSAKKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++       DF          +
Sbjct: 349 YREISSCSWCGDFQARRMKARHKN 372


>gi|188995510|ref|YP_001929762.1| seryl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
 gi|188595190|dbj|BAG34165.1| seryl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
          Length = 423

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 70/192 (36%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E    G  E+  P + + D    +G+      +M  
Sbjct: 163 GAGFPVYKGKGARLQRALVNFFLDEARNAGFTEIEPPYVVNEDSGYGTGQLPDKEGQMYH 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           +   N   +   PT E  +T+IFR  I S   LP         FR E     +   G+ R
Sbjct: 223 VTADN---LYLIPTAEVPVTNIFRDVILSEDELPILLTAYSACFRREAGSYGKDVRGLNR 279

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHE 209
             +F   +    D  PE S    ++M      +  +LGL    +R   G I     L+++
Sbjct: 280 LHQFNKVEIVCIDK-PEHSYEQLDQMVGYVQGLVDKLGLPWRILRLCGGDISFTSALTYD 338

Query: 210 FIVLADTGETQV 221
           F V +   E  +
Sbjct: 339 FEVYSAAQERWL 350


>gi|189501712|ref|YP_001957429.1| histidyl-tRNA synthetase [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497153|gb|ACE05700.1| hypothetical protein Aasi_0257 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 458

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 35/97 (36%)

Query: 344 VAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ 403
              +  + + +   D+        I  RL              ++  Q   A+    P  
Sbjct: 362 QQAYFNTKVMVTNLDEESVKVALDIITRLRNHDIPAELYPEKVKLKKQLMYANKKDIPFV 421

Query: 404 VIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           +I+G +    SK  +K   TG +   + +++IN  S+
Sbjct: 422 LIIGEEERQASKFTLKDMSTGDQAFYTFDQLINILSN 458


>gi|294664247|ref|ZP_06729621.1| seryl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605989|gb|EFF49266.1| seryl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 426

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 66/204 (32%), Gaps = 11/204 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP L +AD    +G+   +  ++    D  +    
Sbjct: 171 ARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFEDDLF-QTDVGESRRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 230 LIPTSEVPLTNIVREEIIDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           +     +               +  +LGL    +   +G +G         E  + +   
Sbjct: 290 TACAPEDSDAEHQRMTR-CAEVVLEQLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF        + +
Sbjct: 349 YREISSCSNCGDFQARRMQARWRN 372


>gi|294625158|ref|ZP_06703801.1| seryl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292600530|gb|EFF44624.1| seryl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 426

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 66/204 (32%), Gaps = 11/204 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP L +AD    +G+   +  ++    D  +    
Sbjct: 171 ARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFEDDLF-QTDVGESRRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 230 LIPTSEVPLTNIVREEIIDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           +     +               +  +LGL    +   +G +G         E  + +   
Sbjct: 290 TACAPEDSDAEHQRMTR-CAEVVLEQLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF        + +
Sbjct: 349 YREISSCSNCGDFQARRMQARWRN 372


>gi|296131564|ref|YP_003638811.1| seryl-tRNA synthetase [Thermincola sp. JR]
 gi|296030142|gb|ADG80910.1| seryl-tRNA synthetase [Thermincola potens JR]
          Length = 423

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 75/208 (36%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    V   + +      G  E+  P L + D  + +G+   + ++M R+   
Sbjct: 164 FYKGLGARLERAVINFMLDLHTREHGYTEIFPPFLVNRDSMIGTGQLPKFEEDMFRI--- 220

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREF 155
           +       PT E  +T+I+R  I     LP         FR E         G++R  +F
Sbjct: 221 DSVDYFLIPTAEVPVTNIYRGEILDGAQLPLYHVAYSACFRAEAGAHGRDTRGLIRQHQF 280

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFI 211
              +   F    +  +    K+  +  ++   LGL    +   +G +G         E  
Sbjct: 281 NKVELVKFTKPEDSFEEL-EKLTANAEKVLQLLGLPYRVVTLCTGDLGFSSAKTYDIEVW 339

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           + +     ++    +F+DF     N  F
Sbjct: 340 LPSYQAYKEISSCSNFLDFQARRANIRF 367


>gi|312077807|ref|XP_003141464.1| glycyl-tRNA synthetase [Loa loa]
 gi|307763369|gb|EFO22603.1| glycyl-tRNA synthetase [Loa loa]
          Length = 747

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/374 (10%), Positives = 98/374 (26%), Gaps = 22/374 (5%)

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--RPRFGVM 150
           ++RL +     + +        T      +K Y  + F+          +          
Sbjct: 356 LMRLREFTMCEIEH-FVDPNNKTHPKFEQVKDYNLMLFSGCNQMDGAPAQTLSIGDAVAK 414

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           +         Y   +     +   +   + + +              ++  +      E 
Sbjct: 415 KLVANETLGYYMVRVHKYLIRTGIDPKRMRFRQHLTNEMAHYACDCWDAEILTSYGWIEC 474

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFD----DIISLNSIVEQWTAPYAATSDVHNEK 266
           + +AD     +          + +E    +     +I            Y   +     +
Sbjct: 475 VGVADRACYDLLQHSKATGEKLVAEKVLSEPKIVQVIEAIPNKPVIGKIYKTEAKQIFAR 534

Query: 267 LFDSLPENKRVSARGI--EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYG------ 318
           L    PE      + I          G K              +        +       
Sbjct: 535 LEQLTPEEVEKLEKEIISAGNARIQCGDKIVELQKDYISIKRYEKKMHTEEFFPSVIEPS 594

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAH------DQVCRDACEKIYARL 372
            G  R++ +V+E S   +           +  +  IK        +         + + L
Sbjct: 595 FGIGRIMYSVLEHSFRQREGDEQRVYFALRPVVAPIKCSILPISANSRFEPIMAAVRSEL 654

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIREDMSL 431
           +K       DD    +G ++A  D +G P  + V  +  S+   V ++  +T  +  + +
Sbjct: 655 AKFSVSYKQDDSSGSLGRRYARTDAIGIPFGITVDFESESEPWTVTLRFSITMEQVRLKV 714

Query: 432 EEVINYASHRFSNN 445
            +V    +   S  
Sbjct: 715 SDVGKTVADLSSER 728



 Score = 45.1 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           G+Y + P+G     N+  + R         +E+    L    +   SG  D +   M++ 
Sbjct: 162 GLYDFGPMGCAMKANMINLWRNHFVLEENMLEVDCSVLTPEAVLKASGHVDRFSDWMVKD 221

Query: 97  ADRNDK 102
               + 
Sbjct: 222 LKTGEC 227


>gi|256384387|gb|ACU78957.1| serine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385219|gb|ACU79788.1| serine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455663|gb|ADH21898.1| serine--tRNA ligase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 422

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 79/245 (32%), Gaps = 14/245 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K +  +  I+ +   +    E+  P + +    + +G+   + ++M ++    
Sbjct: 168 IYTGLGSKLVRAIADILLKRHEKHNYKEIFCPLIVNKSAMLGTGQLPKFSEDMYQV---- 223

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
                  PT E  +T++  + I +Y  LP  +      FR E     R   G++R  +F 
Sbjct: 224 -GEQYLIPTSEVPLTNLHANEILTYDMLPLKYTSFTQCFRQEAGSAGRDTKGMIRLHQFN 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +        +        +      + +   L    +   SG IG   +     E   
Sbjct: 283 KVELVKIVHPDQSMNEL-ELLVKDAEDVLNMFDLPYRVVELCSGDIGFSSAKTYDLEVWF 341

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                  ++    +  DF   +  T F D      +V        A   +    L +   
Sbjct: 342 PEQNKYREISSCSNCTDFQARNIQTRFKDKDGKIKLVHTLNGSGVAVDRLIAAILENYWD 401

Query: 273 ENKRV 277
             K V
Sbjct: 402 GEKLV 406


>gi|257076309|ref|ZP_05570670.1| histidyl-tRNA synthetase [Ferroplasma acidarmanus fer1]
          Length = 429

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/401 (11%), Positives = 103/401 (25%), Gaps = 28/401 (6%)

Query: 62  NRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRS 120
              G   +  P+L+  DL+  +SG       +     D+  + +   P        +   
Sbjct: 32  ENFGYQLIDFPSLEPLDLYRLKSG--TEIVNQTFSFTDKGGREVTMIPEATPSTVRLLT- 88

Query: 121 HIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180
             +     P  +Y     +R E           +F            +          + 
Sbjct: 89  -ARKDLPRPVRWYSFPKVWRYEEPQEGRFREHYQFNADVFGLDSEEADAEIVGLASSILD 147

Query: 181 YLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFD 240
           YL +     +           +      +        +      K              D
Sbjct: 148 YLGLSGVYEININDRFLMEYVLKDLNIEDIPDAFSIIDKYKKVDKSSFIEAFKGIGAGED 207

Query: 241 DIISLNS---------IVEQWTAPYAATSDV------HNEKLFDSLP---ENKRVSARGI 282
           +I  + S          +E+         +         +K FD +    E+K      I
Sbjct: 208 EIKKILSLLGEKVDIGNMEKKIKRVVNNYEEIKPRIERIKKTFDLIGLYTESKINFDFSI 267

Query: 283 EVGHIFYFG---TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGII 339
             G  +Y G     + +          G+   +              A+ ++  +     
Sbjct: 268 VRGLSYYTGIVFEAFDVKGELRAILGGGRYDGLSQLFTQEKIPAAGFAIGDAVIELLLKR 327

Query: 340 WPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLG 399
               +         I        D   K+ + +  +      D    +I SQ   A   G
Sbjct: 328 QNLWLKRNIKESYYICNLSSENDDYIIKVASVIRSLNKIAVVDMTHRKISSQMKSAS--G 385

Query: 400 FPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
           F   VI+G + + ++ + +K+  +  +  +  +E       
Sbjct: 386 FDFAVIIGEREIEENTLTVKNMHSSEQSTIGYDEFFLKLRS 426


>gi|323490216|ref|ZP_08095433.1| seryl-tRNA synthetase [Planococcus donghaensis MPA1U2]
 gi|323396112|gb|EGA88941.1| seryl-tRNA synthetase [Planococcus donghaensis MPA1U2]
          Length = 424

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 71/215 (33%), Gaps = 13/215 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +  Q   G  EM  P + + +    +G+   + ++   + 
Sbjct: 163 FVFYRGLGARLERALINFMMDLHQEEHGYEEMLPPYMVNRESLTGTGQLPKFEEDAFLIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                     PT E  +T+ +R  I +   LP  F      FR E     R   G++R  
Sbjct: 223 KE---DYFLIPTSEVPVTNFYRDEILTADMLPQAFASYSSNFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHE 209
           +F   +   F    +       K+     ++   LGL    ++  +  +          E
Sbjct: 280 QFNKVELVRFVKPEDSYDEL-EKLTGHAEKVLQLLGLPYRVLKMCTADLGFTAAKKYDIE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
             + +     ++    +F DF     N  F    +
Sbjct: 339 VWIPSQETYREISSCSNFEDFQARRANIKFRREAT 373


>gi|121998174|ref|YP_001002961.1| seryl-tRNA synthetase [Halorhodospira halophila SL1]
 gi|166222731|sp|A1WWU7|SYS_HALHL RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|121589579|gb|ABM62159.1| seryl-tRNA synthetase [Halorhodospira halophila SL1]
          Length = 425

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 22/243 (9%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSK---G--IYSW-LPLGQKALDNVNAIIREEQ-NRTGA 66
            PRD      +L+   GM  + +    G    +   PL  +    +   + +      G 
Sbjct: 135 KPRDHVDLG-ELL--GGMDFEAAARIAGSRFVTLSGPL-ARLHRALTQFMLDLHCREHGY 190

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+ VP L +A     +G+   +  ++ R+    D ++   PT E  +T++ +  I    
Sbjct: 191 TEVYVPYLVNARSLTGTGQLPKFEDDLFRVEH--DPSLYLAPTAEVPVTNLVQERIVEDA 248

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           ++P  F      FR E     +   G++R  +F  K      + P  S  +   +     
Sbjct: 249 DMPLRFVCHTPCFRSEAGSYGKDTRGMIRQHQF-EKVELVQVVRPGESWDALEALTGHAE 307

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +  RL L    +    G IG   +     E  + A     ++    +F DF        
Sbjct: 308 TVLRRLALPYRVVSLCGGDIGFSAARTYDLEVWLPAQERYREISSCSNFTDFQARRLQAR 367

Query: 239 FDD 241
           + +
Sbjct: 368 WRN 370


>gi|167626395|ref|YP_001676895.1| seryl-tRNA synthetase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|189083569|sp|B0TYM9|SYS_FRAP2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|167596396|gb|ABZ86394.1| Serine--tRNA ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 426

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 71/204 (34%), Gaps = 12/204 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            K    +   + +    + G  E+ VP + + D    +G+   + +++ +L    D    
Sbjct: 172 AKLHRALTQFMLDMHTEKHGYEELYVPYMVNNDSLYGTGQLPKFSEDLFKLE--GDFEYS 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I    +LP  +      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVPITNLVRDEILDTESLPRYYTAHTPCFRSEAGSYGRDTKGLIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              +  +  + S   +     ++  +L L    ++  +G +G         E  + +   
Sbjct: 290 HITIADK-GEESLELLTSHAEKVLQKLNLPYRVVKLCTGDMGFSAKKTYDLEVWIPSQNT 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++       DF          +
Sbjct: 349 YREISSCSWCGDFQARRMKARHKN 372


>gi|288928178|ref|ZP_06422025.1| serine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331012|gb|EFC69596.1| serine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 429

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 10/221 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   +E  ++G +E+  P + +      +G+      +M  
Sbjct: 164 GAGFPIYIGKMARLQRALEAFFLDEARKSGYLEVQPPLVVNQASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+IFR  I   ++LP         FR E     +   G+ R
Sbjct: 224 AEQ---DDLYLIPTAEVPVTNIFRDVILDEKDLPVMRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHE 209
             +F   +    D  PE S  S+ KM      +  +L L    +    G +     + ++
Sbjct: 281 LHQFDKVEIVRIDK-PEHSHESHKKMLEHVEGLLQKLELPYHILLLCGGDMSFTSSICYD 339

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           F V +   +  +  S         +         + +  +E
Sbjct: 340 FEVWSAAQKRWLEVSSVSNFESYQANRLKCRYRRAEDKKIE 380


>gi|258647930|ref|ZP_05735399.1| serine--tRNA ligase [Prevotella tannerae ATCC 51259]
 gi|260851769|gb|EEX71638.1| serine--tRNA ligase [Prevotella tannerae ATCC 51259]
          Length = 424

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 70/193 (36%), Gaps = 10/193 (5%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEML 94
              G   ++  G      +     +E  + G  E+  P + +A     +G+      +M 
Sbjct: 163 SGAGFPVYIGQGAHLQRALINFFLDEARKAGYTEIMPPIVVNAASGYGTGQLPDKEGQMY 222

Query: 95  RLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVM 150
                    +   PT E  +T+I+R  I   +NLP         FR E     +   G+ 
Sbjct: 223 HCE---VDDLYLIPTAEVPVTNIYRDVILEEKNLPIKNCAYTECFRREAGSYGKDVRGLN 279

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSH 208
           R  EF   +    D  PE SK S+ +M      +  +L L    +    G +     L +
Sbjct: 280 RLHEFSKIELVRIDK-PEHSKQSHQEMLDHVEGLLQKLELPYHILLLCGGDMSFTSSLCY 338

Query: 209 EFIVLADTGETQV 221
           +F V ++  +  +
Sbjct: 339 DFEVYSEAQKRWL 351


>gi|225024247|ref|ZP_03713439.1| hypothetical protein EIKCOROL_01119 [Eikenella corrodens ATCC
           23834]
 gi|224943272|gb|EEG24481.1| hypothetical protein EIKCOROL_01119 [Eikenella corrodens ATCC
           23834]
          Length = 430

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/428 (14%), Positives = 114/428 (26%), Gaps = 31/428 (7%)

Query: 38  GIYSWLP-------LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDS 88
           G+   LP       L           I +  +R G  ++  P ++   L+V S     D 
Sbjct: 10  GMNDLLPVEQKDFKLTAAFWQAFENRIGQWAHRFGYRQIRTPIVEQTGLFVRSIGEDTDV 69

Query: 89  YGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP--- 145
            GKEM   AD ND   +                     N     + +   FR E      
Sbjct: 70  VGKEMYTFADSNDTLSLSLRPEGTASCLRAVVEHNLLYNGGQKLWYMGPMFRRERPQKGR 129

Query: 146 -RFGVMRSREFLMKDAYSFDLT--PEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R       E L  +    D       +          YL +            A    +
Sbjct: 130 YRQFHQVGVEALGFEGPDIDAEIIAMCADLWRELGISQYLTLEINSLGNREERAAHRAAL 189

Query: 203 GGD-LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATS 260
            G    HE  +  D+           +D   P      +    L   + E   A YA   
Sbjct: 190 VGYLKQHEAALDEDSLRRMHTNPLRVLDSKNPDLQEICNGAPRLADYLGEASRAHYAGFK 249

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIF-----YFGTKYSLPMSATFKGADGKDHYVQMG 315
            + +      +  ++ V         +F       G + ++     + G   +       
Sbjct: 250 ALLDGLGIAYVENHRLVRGLDYYNQTVFEWTTDKLGAQATVCGGGRYDGLIEELGGKPAP 309

Query: 316 SYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV 375
           S G         ++   +          +         +    Q    A           
Sbjct: 310 SIGFAMGVERLLLLVHEYGNLQADAAPDIYVIHQGGDTLLPSMQYAAAA--------RAA 361

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-REDMSLEEV 434
           G  V      +++ +Q   AD  G  + +IVG   +++ K  +K    G  +  +   ++
Sbjct: 362 GFSVLQHSGSQKLAAQMKKADASGAKVALIVGEGELAEGKASLKDMQQGRGQVSVPAADL 421

Query: 435 INYASHRF 442
           +   +   
Sbjct: 422 LKQLNEWI 429


>gi|260593112|ref|ZP_05858570.1| serine--tRNA ligase [Prevotella veroralis F0319]
 gi|260534912|gb|EEX17529.1| serine--tRNA ligase [Prevotella veroralis F0319]
          Length = 429

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 10/221 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   +E  ++G +E+  P + + D  + +G+      +M  
Sbjct: 164 GAGFPLYIGKMARFQRALEAFFLDEARKSGYLEVQPPLVVNQDSGLGTGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+IFR  I   + LP         FR E     +   G+ R
Sbjct: 223 --HANLDDLYLIPTAEVPVTNIFRDEILDEKELPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHE 209
             +F   +    D  PE S  S ++M      +  +L L    +R   G +     + ++
Sbjct: 281 LHQFDKVEIVRIDK-PEHSYESLDEMLNHVEGLLKKLELPYHILRLCGGDMSFTSAICYD 339

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           F V +   E  +  S         +         + +  +E
Sbjct: 340 FEVWSAAQERWLEVSSVSNFESYQANRLHCRYRHAEDKKIE 380


>gi|189426285|ref|YP_001953462.1| seryl-tRNA synthetase [Geobacter lovleyi SZ]
 gi|238692147|sp|B3EAQ9|SYS_GEOLS RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|189422544|gb|ACD96942.1| seryl-tRNA synthetase [Geobacter lovleyi SZ]
          Length = 423

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 70/205 (34%), Gaps = 13/205 (6%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    + + + +      G  E+  P + +      +G+   + +++ RL D      
Sbjct: 168 GARLERALISFMLDLHSTEHGYTEVLPPFMVNRASMTGTGQLPKFEEDLFRLMD---PEY 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I R  I    +LP ++      FR E     +   G++R  +F   + 
Sbjct: 225 FLIPTAEVPVTNIHRDEILKKSDLPISYTAYTPCFRREAGSYGKDTRGLIRQHQFNKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F    E       K+     ++   L L    M   SG IG         E  + +  
Sbjct: 285 VKFVHPDESQAEL-EKLTGHAEKVLQLLELPYRVMALCSGDIGFSACKTYDLEVWLPSQN 343

Query: 217 GETQVFCSKDFMDFPIPSENTDFDD 241
              ++     F DF        F +
Sbjct: 344 TYREISSCSSFGDFQARRAGIRFRE 368


>gi|332866122|ref|ZP_08436837.1| anticodon binding domain protein [Acinetobacter baumannii 6013113]
 gi|332734763|gb|EGJ65857.1| anticodon binding domain protein [Acinetobacter baumannii 6013113]
          Length = 195

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 52/181 (28%), Gaps = 5/181 (2%)

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
            +   L        + +        G++ ++     + G  G+       S       + 
Sbjct: 18  VINQKLVRGLDYYNKTVFEWTTTALGSQGTVCAGGRYDGLVGQLKGKADQSVPAVGFAMG 77

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG--CDVFWDD 383
              +    +              +          +     E++  +L        +    
Sbjct: 78  MERLLLLLEQVEQAEIVRDCEAFLVAEPAYQSKALV--LAEQLRDQLEAANSNIRIKT-G 134

Query: 384 MGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
               + SQ   AD  G    +I+G +     ++ +K   T  +  ++L E++ +   +F+
Sbjct: 135 SQGSMKSQMKKADQAGAVYAIILGEREWEAQQLAVKELATAEQSQVALAELVPFLIEKFT 194

Query: 444 N 444
            
Sbjct: 195 K 195


>gi|309388302|gb|ADO76182.1| seryl-tRNA synthetase [Halanaerobium praevalens DSM 2228]
          Length = 422

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 64/194 (32%), Gaps = 13/194 (6%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   +     +  G  E+  P + +AD    +G+   + K+M +L        
Sbjct: 169 GARLERALINFMLNLHTDEHGYKEVFPPFIANADSMTGTGQLPKFEKDMFKLE---GLDY 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDA 160
              PT E  +T+++R  I     LP         FR E         G++R  +F   + 
Sbjct: 226 YLIPTAEVPVTNMYRDEILDVEQLPEYLTAYSACFRAEAGAHGRDTRGIIRQHQFNKVEM 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F    +               +  RL L    +   +G +    +     E  + A  
Sbjct: 286 VKFVKPEDSYAELEKITAD-AEDVLQRLELPYRVVSLCTGDLTFSSAKTYDLEVWMPAYD 344

Query: 217 GETQVFCSKDFMDF 230
              ++    +F DF
Sbjct: 345 SYREISSCSNFEDF 358


>gi|270307939|ref|YP_003329997.1| seryl-tRNA synthetase [Dehalococcoides sp. VS]
 gi|270153831|gb|ACZ61669.1| seryl-tRNA synthetase [Dehalococcoides sp. VS]
          Length = 413

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 54/176 (30%), Gaps = 9/176 (5%)

Query: 32  IHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYG 90
           I       Y     G +    + A + +    +    E+  P +   +  V SG    + 
Sbjct: 146 IKLSGSRFYILKGEGARLQRALIAFMLDLHTRKHDYTEIYPPYMIKRECLVASGNLPKFA 205

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR---- 146
             +       ++   + PT E  +T++ R  I S   LP  +      FR E        
Sbjct: 206 DNLY---HDAEEDYWWVPTAEAPLTNLHRDEILSVEQLPIHYVAYTACFRREKMSAGKDV 262

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            G+ R  +F   + Y +    +        +      I   L +     +  +  I
Sbjct: 263 RGIKRLHQFDKVELYKYCKPEDSFDELEKMVAD-AEEIADALKIPYRLKQLVTADI 317


>gi|320106187|ref|YP_004181777.1| seryl-tRNA synthetase [Terriglobus saanensis SP1PR4]
 gi|319924708|gb|ADV81783.1| seryl-tRNA synthetase [Terriglobus saanensis SP1PR4]
          Length = 440

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 73/211 (34%), Gaps = 18/211 (8%)

Query: 46  GQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR----- 99
           G +    +   + +   R  G  E+  P + ++     +G+   + +++    D+     
Sbjct: 171 GARLERALANFMLDLHTRLHGYTEVLPPFMVNSKSLYGTGQLPKFAEDLFHSDDKGSYVP 230

Query: 100 ---NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRS 152
               D      PT E  +T++ R        LP ++      FR E     +   G++R 
Sbjct: 231 GELQDNDHWLIPTAEVPVTNLLRDETIDEVKLPISYCAWTPCFRSEAGSYGKDVRGMIRQ 290

Query: 153 REFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH---- 208
            +F  K       TP  S+  + K+      +   L L    M   +G +G   +     
Sbjct: 291 HQF-QKVELVKFATPADSEFEHEKLTRHAETVLELLKLPYRRMLLCTGDMGFSSAKTYDL 349

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           E  +       ++    +F+DF     N  F
Sbjct: 350 EVWLPGQNLYREISSCSNFLDFQARRANIRF 380


>gi|241668826|ref|ZP_04756404.1| seryl-tRNA synthetase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254877358|ref|ZP_05250068.1| seryl-tRNA synthetase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254843379|gb|EET21793.1| seryl-tRNA synthetase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 426

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 71/204 (34%), Gaps = 12/204 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            K    +   + +    + G  E+ VP + + D    +G+   + +++ +L    D    
Sbjct: 172 AKLHRALTQFMLDMHTEKHGYEELYVPYMVNNDSLYGTGQLPKFSEDLFKLE--GDFEYS 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I    +LP  +      FR E     R   G++R  +F   +  
Sbjct: 230 LIPTAEVPITNLVRDEILDTESLPRYYTAHTPCFRSEAGSYGRDTKGLIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              +  +  + S   +     ++  +L L    ++  +G +G         E  + +   
Sbjct: 290 HITIADK-GEESLELLTSHAEKVLQKLNLPYRVVKLCTGDMGFSAKKTYDLEVWIPSQNT 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++       DF          +
Sbjct: 349 YREISSCSWCGDFQARRMKARHKN 372


>gi|289523031|ref|ZP_06439885.1| serine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503574|gb|EFD24738.1| serine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 430

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 69/224 (30%), Gaps = 13/224 (5%)

Query: 25  LMLRTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVES 83
           LM     I             G +    +   + +      G +E   P + ++     +
Sbjct: 152 LMDFEAGIKLAGSRFTVLRGNGARLARALINFMLDLHTREHGYLEFEPPFIVNSKTMTGT 211

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           G+   +  ++          +   PT E  +T++    I     LP  +      FR E 
Sbjct: 212 GQLPKFANDLYHCES---DDLWLIPTAEVPLTNMHAEEILDEDVLPLYYTAYTPCFRREA 268

Query: 144 ----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
               R   G++R  +F   +                K+  +   +  RLGL    +   +
Sbjct: 269 GSHGRDVRGMLRQHQFDKVELVKICTPETSYDEL-EKLTQNAEEVLKRLGLPYRVVCLCT 327

Query: 200 GPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           G +G   S     E  + +     ++    +  DF     NT +
Sbjct: 328 GDMGFAASKTYDLEVWLPSQNTYREISSCSNCEDFQARRMNTRY 371


>gi|118474445|ref|YP_892066.1| histidyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
 gi|166227956|sp|A0RPD3|SYH_CAMFF RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|118413671|gb|ABK82091.1| histidyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
          Length = 409

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/396 (14%), Positives = 102/396 (25%), Gaps = 22/396 (5%)

Query: 48  KALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMI 105
           K    +     +     G      P ++   L+  S     D  GKEM +  D+    + 
Sbjct: 17  KLYKFIVETCEQITKNYGYELCETPKMEETSLFKRSVGESSDIVGKEMYQFIDKGGNDVC 76

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL 165
             P     +   F             +Y     FR E   R    R REF       F  
Sbjct: 77  LRPEGTAGVVRAFIEAKFDKAGGVKRYYYYGSMFRYERPQRG---RLREFHQFGVECFGE 133

Query: 166 TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGET-QVFCS 224
                  S   M    L  F       I    +S  +          + +  +     C 
Sbjct: 134 ASVYEDASVILMLNEILDKFGIETTLKINSLGDSECMPKYRQKLISFIDEKKDQLCEDCR 193

Query: 225 KDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENK------RVS 278
           +  +  PI   +   +    L       T           E+L D L +N          
Sbjct: 194 RRLVTNPIRVLDCKKEHCQILLKNAPLITENLNEECYSEFEQLKDILTKNGVKFEVDGRL 253

Query: 279 ARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGI 338
            RG++      F        S +     G+   +     G     V  A+          
Sbjct: 254 VRGLDYYCKTAFEFVSDEIGSKSAVAGGGRYDRLVDFLGGKSTPAVGWAMGIERIMEILK 313

Query: 339 IWPDSVAPFKISLINIKAHDQVCRDACEKIYA---RLSKVGCDVFWDDMGEQIGSQFAVA 395
                 +   I +  +           ++IY    +L K    V      +       +A
Sbjct: 314 QKDMPNSRDGIYICALDKK------YIDEIYKIGFKLRK-NYKVEISYEAKSPNKHLNLA 366

Query: 396 DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
           D     L + +G     + ++  K+      + + +
Sbjct: 367 DKKFAKLFLCMGEDEAKNGEIWYKNLENKNEKRIKI 402


>gi|224372416|ref|YP_002606788.1| histidyl-tRNA synthetase [Nautilia profundicola AmH]
 gi|223588748|gb|ACM92484.1| histidyl-tRNA synthetase [Nautilia profundicola AmH]
          Length = 386

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/372 (15%), Positives = 97/372 (26%), Gaps = 15/372 (4%)

Query: 52  NVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPT 109
            +    RE     G   +  P L+   L+  S     D   KEM +  D+    +   P 
Sbjct: 18  KIFDTAREIAENYGYSYIETPVLEETALFKRSVGESSDIVNKEMYQFTDKGGNDVCLRPE 77

Query: 110 HEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEG 169
               +   F  H       P  F+     FR E   +    R REF      SF      
Sbjct: 78  GTAGVVRSFIEHKYDKAQTPKRFWYFGPMFRYERPQKG---RLREFHQFGIESFGEPSIY 134

Query: 170 SKHSYNKMFVSYLRIFHRLGLKSIPM--RAESGPIGGDLSHEFIVLADTGETQVFCSKDF 227
              +   M               I      E  P   +   EF+ L    +    C +  
Sbjct: 135 EDINIIAMAADIFDALGIEYTLKINSLGCGECMPKYREKLVEFLNLH-KEDLCEDCQRRI 193

Query: 228 MDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHI 287
              PI + +   D   ++     + T           E L   L          ++   +
Sbjct: 194 TQNPIRTLDCKVDSCQAILKDAPKITDNLCENCQKDFETLKKGL--ENLGIKYEVDKNLV 251

Query: 288 FYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSV--- 344
                 YS           G    +  G      +  +             I        
Sbjct: 252 RGL-DYYSKTTFEFVSTEIGAQSAIAGGGRYDRLVEYLGGKPTPGVGFAIGIERIMELVK 310

Query: 345 APFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQV 404
                  I I    +   +  +K    L K    V+++   + + +    AD   +   +
Sbjct: 311 TEKTRKGIYIGVMLEDALEFAQKEAKNLRKNE-KVYFEPKVKSLKAHLKAADKGNYKKAM 369

Query: 405 IVGSKFVSDSKV 416
           IVG + + +   
Sbjct: 370 IVGEEELKNKTF 381


>gi|78047250|ref|YP_363425.1| seryl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325927384|ref|ZP_08188632.1| seryl-tRNA synthetase [Xanthomonas perforans 91-118]
 gi|123585378|sp|Q3BUY8|SYS_XANC5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|78035680|emb|CAJ23371.1| seryl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325542205|gb|EGD13699.1| seryl-tRNA synthetase [Xanthomonas perforans 91-118]
          Length = 426

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 66/204 (32%), Gaps = 11/204 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP L +AD    +G+   +  ++    +  +    
Sbjct: 171 ARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFEDDLF-QTEVGESRRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 230 LIPTSEVPLTNIVRDEIIDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           +     +               +  +LGL    +   +G +G         E  + +   
Sbjct: 290 TACAPEDSDAEHQRMTR-CAEVVLEQLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF        + +
Sbjct: 349 YREISSCSNCGDFQARRMQARWRN 372


>gi|327312423|ref|YP_004327860.1| serine--tRNA ligase [Prevotella denticola F0289]
 gi|326945210|gb|AEA21095.1| serine--tRNA ligase [Prevotella denticola F0289]
          Length = 429

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 80/221 (36%), Gaps = 10/221 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   +E  ++G +E+  P + + D  + +G+      +M  
Sbjct: 164 GAGFPLYIGKMARFQRALEAFFLDEARKSGYLEVQPPLVVNQDSGLGTGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+IFR  I   ++LP         FR E     +   G+ R
Sbjct: 223 --HANLDDLYLIPTAEVPVTNIFRDEILDEQDLPVKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHE 209
             +F   +    D  PE S  S N+M      +  +L L    +R   G +     + ++
Sbjct: 281 LHQFDKVEIVRIDK-PEHSYASLNEMLEHVEGLLKKLELPYHILRLCGGDMSFTSAICYD 339

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           F V +   E  +  S         +         + +  +E
Sbjct: 340 FEVWSAAQERWLEVSSVSNFESYQANRLHCRYRHADDKKIE 380


>gi|227431355|ref|ZP_03913408.1| seryl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352948|gb|EEJ43121.1| seryl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 435

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 68/204 (33%), Gaps = 12/204 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + +E  + G  EM  P + +      +G+Y  +  +  R+         
Sbjct: 178 GARLERAVYNFMLDEHRQEGYTEMITPIVVNDSAMFGTGQYPKFQDDAYRVE---GLNQT 234

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
           Y PT E  +T+ +        +LP  F  +   FR E     +   G++R  +F   +  
Sbjct: 235 YIPTAEVPLTNYYSGEELPSEDLPIKFTALSPSFRKEAGSAGKDTRGLIRLHQFNKVEMV 294

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F    +  +            I  +L L    +   +G +G   +     E  +     
Sbjct: 295 KFTKPEDSYEELEKMTLD-AENILQKLNLPYHVIVLSTGDMGFSAAKTYDIEVWMPQQNV 353

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF     +  + D
Sbjct: 354 YREISSVSNTEDFQARRMHITYRD 377


>gi|116617315|ref|YP_817686.1| seryl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272484|sp|Q03ZQ9|SYS_LEUMM RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116096162|gb|ABJ61313.1| seryl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 435

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 68/204 (33%), Gaps = 12/204 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + +E  + G  EM  P + +      +G+Y  +  +  R+         
Sbjct: 178 GARLERAVYNFMLDEHRQEGYTEMITPIVVNDSAMFGTGQYPKFQDDAYRVE---GLNQT 234

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
           Y PT E  +T+ +        +LP  F  +   FR E     +   G++R  +F   +  
Sbjct: 235 YIPTAEVPLTNYYSGEELPSEDLPIKFTALSPSFRKEAGSAGKDTRGLIRLHQFNKVEMV 294

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
            F    +  +            I  +L L    +   +G +G   +     E  +     
Sbjct: 295 KFTKPEDSYEELEKMTLD-AENILQKLNLPYHVIVLSTGDMGFSAAKTYDIEVWMPQQNV 353

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF     +  + D
Sbjct: 354 YREISSVSNTEDFQARRMHITYRD 377


>gi|325851996|ref|ZP_08171079.1| serine--tRNA ligase [Prevotella denticola CRIS 18C-A]
 gi|325484552|gb|EGC87468.1| serine--tRNA ligase [Prevotella denticola CRIS 18C-A]
          Length = 429

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 80/221 (36%), Gaps = 10/221 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   +E  ++G +E+  P + + D  + +G+      +M  
Sbjct: 164 GAGFPLYIGKMARFQRALEAFFLDEARKSGYLEVQPPLVVNQDSGLGTGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+IFR  I   ++LP         FR E     +   G+ R
Sbjct: 223 --HANLDDLYLIPTAEVPVTNIFRDEILDEQDLPVKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHE 209
             +F   +    D  PE S  S N+M      +  +L L    +R   G +     + ++
Sbjct: 281 LHQFDKVEIVRIDK-PEHSYASLNEMLEHVEGLLKKLELPYHILRLCGGDMSFTSAICYD 339

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           F V +   E  +  S         +         + +  +E
Sbjct: 340 FEVWSAAQERWLEVSSVSNFESYQANRLHCRYRHADDKKIE 380


>gi|299537316|ref|ZP_07050616.1| seryl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298727207|gb|EFI67782.1| seryl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 428

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +      G  EM  P + + D    +G    + +++ +L   
Sbjct: 165 FYRGLGARLERALMTFMMDLHAEEHGYEEMLPPIIVNRDSLTGTGNLPKFEEDLFKLE-- 222

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F
Sbjct: 223 -ETDYFMIPTAEVPVTNFYRDEILLAEALPQGFASYSPCFRSEAGSAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFI 211
              +   F    +        +     ++   LGL    ++  +  +G         E  
Sbjct: 282 NKVELVRFVKPEDSY-EQLELLTGHAEKVLQLLGLPYRKLKMCTADLGFTAAKKYDLEVW 340

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           + A     ++    +F DF     N  F
Sbjct: 341 IPAQNMYREISSCSNFEDFQARRANIRF 368


>gi|197294640|ref|YP_001799181.1| seryl-tRNA synthetase [Candidatus Phytoplasma australiense]
 gi|171853967|emb|CAM11930.1| Seryl-tRNA synthetase [Candidatus Phytoplasma australiense]
          Length = 418

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 51/175 (29%), Gaps = 8/175 (4%)

Query: 16  RDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSV 71
           +D    + KL +    +   I            LG +    +   + +  +  G  E+  
Sbjct: 131 KDHVALAKKLDILDFEKAAKI--TGSRFVVCKGLGARLERALIQFMMDLHSTKGYQEIIP 188

Query: 72  PTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFT 131
           P + +      +G+   +  E+ +++   +      PT E    ++ R        LP  
Sbjct: 189 PYIINEKSMFATGQLPKFEAEVFKISHHKNNWY-LNPTAEVPTINLHRDEFFPRNALPLK 247

Query: 132 FYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
           +      FR E        R   F        +L       +   +    L+   
Sbjct: 248 YVAYTTSFRQEAGSAGSYSRGI-FRQHQFNKVELIQFCHPQNSYSLLDQMLQDSC 301


>gi|291301288|ref|YP_003512566.1| histidyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
 gi|290570508|gb|ADD43473.1| histidyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
          Length = 445

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/426 (15%), Positives = 118/426 (27%), Gaps = 36/426 (8%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   +LP G+     V A + E     G   ++  +++  D  +  G        + RL
Sbjct: 8   SGFPEFLPAGRVVEQRVIAKLAETFELYGFASVNTRSIEPMDQLLRKGETSKEVYVLRRL 67

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYR---NLPFTFYQIQLKFRDELRPRFGVMRSR 153
               +     G      +T  F  ++         PF  YQIQ  +R E        R R
Sbjct: 68  QAEAESGGDTGFGLHFDLTVPFARYVLENAGKLQFPFRRYQIQPCWRGERPQDG---RFR 124

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFV-------------SYLRIFHRLGLKSIPMRAESG 200
           EF   D    D     + +      V                    +L          S 
Sbjct: 125 EFWQADIDIVDRDELPTHYEVEIPLVVGDALRSLPIPDVRIHVNNRKLSQGFYQGLGLSD 184

Query: 201 PIGGDLSHEFIVLADTG-------------ETQVFCSKDFMDFPIPSEN-TDFDDIISLN 246
           P+G   + + I                   + QV       +     E+  D    + ++
Sbjct: 185 PMGAIRAVDKIDKVGPAGVAKLLSEELGAADDQVKACLALAEIATDDESFVDAVRALGVS 244

Query: 247 SIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGAD 306
             +        AT      +    L       ARG++      + T            + 
Sbjct: 245 DPLLDEGLDELATVIATGAEDAPGLLRADMRIARGLDYYTGTVYETFMDGYGRLGSVCSG 304

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G+   +            ++  I                    + + +   D   R  C+
Sbjct: 305 GRYDNLASDGKNSFPGVGISIGISRILVPLVSEGKLGATRDVPTCVLVALPDTDSRRDCD 364

Query: 367 KIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
           +I A+L   G         ++ G Q   A+  G P  +       +D   EI+   +G +
Sbjct: 365 RIAAKLRSRGVATEVAPAAQKYGKQIKFAERRGIPFVLF--PSSGTDGH-EIRDIRSGEQ 421

Query: 427 EDMSLE 432
             + ++
Sbjct: 422 STVDID 427


>gi|116334281|ref|YP_795808.1| seryl-tRNA synthetase [Lactobacillus brevis ATCC 367]
 gi|122269037|sp|Q03PU5|SYS_LACBA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116099628|gb|ABJ64777.1| seryl-tRNA synthetase [Lactobacillus brevis ATCC 367]
          Length = 423

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 72/222 (32%), Gaps = 12/222 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +L  G +    V     +E  + G  E+  P + + D    +G++  + +++ +L D  
Sbjct: 165 YYLGAGARLERAVYNFFLDENTKAGFKEVLPPYIVNDDSMYGTGQFPKFKEDVYQLKDE- 223

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
             AM   PT E  + + +R  +     LP  F  +   FR E     R   G++R  +F 
Sbjct: 224 --AMTLIPTAEVPLVNYYRDEVIPEEELPVWFTALTPAFRSEAGSAGRDTRGLIRLHQFN 281

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +   F             +      +  +LGL    +   +  +    +     E   
Sbjct: 282 KVEMVKFCKPENSWAEL-EALTKHAESLLQKLGLAYHVITLTTSDMSFTAAMTHDLEVWF 340

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
                  ++    +  DF     +  + D       V     
Sbjct: 341 PEQQTYREISSCSNTTDFQARRAHIQYRDENGKLQYVHALNG 382


>gi|167036460|ref|YP_001664038.1| seryl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|167038703|ref|YP_001661688.1| seryl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|300913738|ref|ZP_07131055.1| seryl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307723246|ref|YP_003902997.1| seryl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|320114885|ref|YP_004185044.1| seryl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|238687557|sp|B0K0Z5|SYS_THEPX RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238687674|sp|B0KAI8|SYS_THEP3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|166852943|gb|ABY91352.1| seryl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|166855294|gb|ABY93702.1| seryl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|300890423|gb|EFK85568.1| seryl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307580307|gb|ADN53706.1| seryl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|319927976|gb|ADV78661.1| seryl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 423

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 70/237 (29%), Gaps = 15/237 (6%)

Query: 14  NPRDAEIASHKLML--RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMS 70
            P+       +L +                +  LG +    +   + +    + G  E+ 
Sbjct: 135 EPKPHWEIGQELDILDFEAAARVTGSRFTFYKGLGARLERALINFMLDLHIEKHGYTEVF 194

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPF 130
            P +        +G+   + ++  ++           PT E  +T+++R  I     LP 
Sbjct: 195 PPFMVHRRSMFGTGQLPKFEEDAFKV---YGTDYFLIPTAEVPVTNMYRDTIIDGDKLPI 251

Query: 131 TFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFH 186
                   FR E     R   G++R  +F   +   F    +  +            +  
Sbjct: 252 YHCAYSACFRQEAGSAGRDTRGLIRQHQFNKVELVKFTEPDKSYEELEKMTRD-AEEVLQ 310

Query: 187 RLGLKSIPMRAESGPI----GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            LGL    +   +G +          E  + +     ++    +  DF     N  +
Sbjct: 311 ALGLPYRVVVICTGDLGFTASKKYDIEVWMPSYGRYVEISSCSNCEDFQARRANIKY 367


>gi|319787313|ref|YP_004146788.1| seryl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465825|gb|ADV27557.1| seryl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
          Length = 425

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 70/207 (33%), Gaps = 11/207 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP + +AD    +G+   + +++    +  +    
Sbjct: 170 ARLHRALAQFMLDLHTGEHGYEETNVPVIVNADSLRGTGQLPKFEEDLF-STELGEHRRY 228

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 229 LIPTSEVPLTNIVRDGILDGDKLPLRMTAHSMCFRSEAGSGGRDVRGMIRQHQFEKVELV 288

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           S     E       +M      +  +LGL    M   +G +G         E  + +   
Sbjct: 289 SITRPEESDAEH-ERMTRCAEVVLEKLGLPYRRMLLCTGDMGFSARKTYDLEVWLPSQHT 347

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF        + +  +
Sbjct: 348 YREISSCSNCGDFQARRMQARWRNPAT 374


>gi|318077865|ref|ZP_07985197.1| histidyl-tRNA synthetase [Streptomyces sp. SA3_actF]
          Length = 405

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/410 (13%), Positives = 112/410 (27%), Gaps = 26/410 (6%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAM 104
               + + A +R+     G   +  P  +   L+        D   KEM     +    +
Sbjct: 7   LAVREAIAAPLRD----AGYGYIETPGFEDVRLFARGVGESTDIVSKEMYVFTTKGGDEL 62

Query: 105 IYGPTHEEVMTDIFRSHIKSYR-NLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-S 162
              P     +             NLP   +    ++R E   +    R R F    A   
Sbjct: 63  ALRPEGTAAVLRAVLESNLHKTGNLPVKVWYSGSQYRYERPQKG---RYRHFSQVGAEAI 119

Query: 163 FDLTPEGSKHSYNKMFVSY--LRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQ 220
               P            +Y  L +     L +    A   P+      +F+   D  E  
Sbjct: 120 GAEDPLLDAELIILADQAYRSLGLTRHRILLNSLGDATCRPVYRAALQDFLRALDLDEET 179

Query: 221 VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKRV 277
               +      +  +  +  D ++   ++  +              L D      E+   
Sbjct: 180 RRRVEINPLRVLDDKRPEVRDQLTGAPLLADYLCDACKAYHEEVRALLDGAGVRYEDDPK 239

Query: 278 SARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKG 337
             RG++      F   +    S +  G  G+   +     G     V  A+         
Sbjct: 240 LVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMLGGPELPSVGWALGVDRTVLAL 299

Query: 338 IIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ-----F 392
                 +    ++ +      +  R A  +    L + G            G +      
Sbjct: 300 EAEGVVLDLPPVTSVYAIPLGEAARRALFEKVTELRRAGIATDL-----SFGGRGLKGAM 354

Query: 393 AVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
             A+  G  L +I G + + D  V++K   +G +  + L + +       
Sbjct: 355 KSANRSGARLALIAGERDLVDGSVQLKDLESGEQHAVPLAQAVAEIQRLL 404


>gi|124008140|ref|ZP_01692838.1| seryl-tRNA synthetase [Microscilla marina ATCC 23134]
 gi|123986388|gb|EAY26201.1| seryl-tRNA synthetase [Microscilla marina ATCC 23134]
          Length = 424

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 8/168 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E    G  E+  P L + D    +G+      +M  
Sbjct: 164 GAGFPVYKGKGARLQRALINFFLDEAVNAGYSEVIPPYLVNQDSGFGTGQLPDKDGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMR 151
                +  +   PT E  +T+++R  I    +LP         FR E         G+ R
Sbjct: 223 --HAQEDGLYLIPTAEVPITNMYRDVIVEETDLPIKHVGYTPCFRREAGAWGAQVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
             +F   +       PE S  + N+M      +  +L L    +R  S
Sbjct: 281 LHQFDKVEIVQI-QHPEKSYETLNEMCTHVQGLLQKLDLPYRVLRLCS 327


>gi|325270159|ref|ZP_08136766.1| serine--tRNA ligase [Prevotella multiformis DSM 16608]
 gi|324987460|gb|EGC19436.1| serine--tRNA ligase [Prevotella multiformis DSM 16608]
          Length = 429

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 10/221 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   +E  ++G +E+  P + + D  + +G+      +M  
Sbjct: 164 GAGFPLYIGKMARFQRALEAFFLDEARKSGYLEVQPPLVVNQDSGLGTGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+IFR  I   ++LP         FR E     +   G+ R
Sbjct: 223 --HANLDDLYLIPTAEVPVTNIFRDEILDEQDLPVKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHE 209
             +F   +    D  PE S  S ++M      +  +L L    +R   G +     + ++
Sbjct: 281 LHQFDKVEIVRIDK-PEHSYASLDEMLEHVEGLLKKLELPYHILRLCGGDMSFTSAICYD 339

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVE 250
           F V +   E  +  S         +         + +  +E
Sbjct: 340 FEVWSAAQERWLEVSSVSNFESYQANRLHCRYRHADDKKIE 380


>gi|325915438|ref|ZP_08177752.1| seryl-tRNA synthetase [Xanthomonas vesicatoria ATCC 35937]
 gi|325538320|gb|EGD10002.1| seryl-tRNA synthetase [Xanthomonas vesicatoria ATCC 35937]
          Length = 426

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 67/207 (32%), Gaps = 11/207 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP L +A+    +G+   +  ++    +  +    
Sbjct: 171 ARLHRALAQFMLDLHVGEHGYEETNVPLLVNAESMRGTGQLPKFEDDLF-QTEVGESRRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 230 LIPTSEVPLTNIVRDEIVDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           +     +               +  RLGL    +   +G +G         E  + +   
Sbjct: 290 TACAPDDSDAEHQRMTR-CAEVVLERLGLPYRKVLLCTGDMGFAAIKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF        + +  S
Sbjct: 349 YREISSCSNCGDFQARRMQARWRNPAS 375


>gi|262381190|ref|ZP_06074328.1| seryl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|262296367|gb|EEY84297.1| seryl-tRNA synthetase [Bacteroides sp. 2_1_33B]
          Length = 424

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E    G +E+  PT+ ++     +G+      +M  
Sbjct: 164 GAGFPVYKGQGARLQRALINFFLDEARDAGYLEIMPPTVVNSASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CE---VDDLYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL--SHE 209
             EF   +    D  PE SK S+ +M      +  +L L    +R   G +        +
Sbjct: 281 LHEFSKVELVRIDK-PEHSKQSHQEMLNHVEGLLQKLELPYRILRLCGGDMSFTAALCFD 339

Query: 210 FIVLADTGETQV 221
           F V ++  +  +
Sbjct: 340 FEVYSEAQQRWL 351


>gi|255015191|ref|ZP_05287317.1| seryl-tRNA synthetase [Bacteroides sp. 2_1_7]
          Length = 424

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E    G +E+  PT+ ++     +G+      +M  
Sbjct: 164 GAGFPVYKGQGARLQRALINFFLDEARDAGYLEIMPPTVVNSASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CE---VDDLYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL--SHE 209
             EF   +    D  PE SK S+ +M      +  +L L    +R   G +        +
Sbjct: 281 LHEFSKVELVRIDK-PEHSKQSHQEMLNHVEGLLQKLELPYRILRLCGGDMSFTAALCFD 339

Query: 210 FIVLADTGETQV 221
           F V ++  +  +
Sbjct: 340 FEVYSEAQQRWL 351


>gi|331703077|ref|YP_004399764.1| serine tRNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328801632|emb|CBW53785.1| Serine tRNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 422

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 14/245 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K +  +  I+ +   +    E+  P + +    + +G+   + ++M ++    
Sbjct: 168 IYTGLGSKLVRVIADILLKRHEKHNYKEIFCPLIVNKSAMLGTGQLPKFSEDMYQV---- 223

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFL 156
                  PT E  +T++  + I +Y  LP  +      FR E     R   G++R  +F 
Sbjct: 224 -GEQYLIPTSEVPLTNLHANEILTYDMLPLKYTSFTQCFRQEAGSAGRDTKGMIRLHQFN 282

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIV 212
             +        +        +      + +   L    +   SG IG   +     E   
Sbjct: 283 KVELVKIVHPDQSMNEL-ELLVKDAEDVLNMFDLPYRVVELCSGDIGFSSAKTYDLEVWF 341

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP 272
                  ++    +  DF   +  T F D  S   +V        A   +    L +   
Sbjct: 342 PEQNKYREISSCSNCTDFQARNIQTRFKDKDSKIKLVHTLNGSGVAVDRLIAAILENYWD 401

Query: 273 ENKRV 277
             K V
Sbjct: 402 GEKLV 406


>gi|327403941|ref|YP_004344779.1| seryl-tRNA synthetase [Fluviicola taffensis DSM 16823]
 gi|327319449|gb|AEA43941.1| seryl-tRNA synthetase [Fluviicola taffensis DSM 16823]
          Length = 423

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 10/197 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G K    +     +E  + G  E  VP + +      +G+      +M  
Sbjct: 163 GAGFPVYRGKGAKLQRALIQFFLDEAEKAGYEEFIVPHVVNEASAYGTGQLPDKEGQMYY 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           +       +   PT E  +T+++R  +    N           FR E         G+ R
Sbjct: 223 M---PVDELYMIPTSEVPLTNVYRDVVLPDENFSIKMTSYTPCFRREAGSYGAHVRGLNR 279

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHE 209
             +F   +       P+ +  +  +M      +  +LGL    +R           ++++
Sbjct: 280 LHQFDKVEIV-RIEHPKNTDRALTEMVNHVKGLLEKLGLHYRILRLCGGDTGFASAMTYD 338

Query: 210 FIVLADTGETQVFCSKD 226
           F V +   E  +  S  
Sbjct: 339 FEVFSAAQEKWLEVSSC 355


>gi|326561007|gb|EGE11372.1| seryl-tRNA synthetase [Moraxella catarrhalis 7169]
          Length = 422

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 84/253 (33%), Gaps = 19/253 (7%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            K    +   + +    + G  EM VP + ++D    +G+   + +++ +L  R +K   
Sbjct: 170 AKLNRALVQFMLDTHTQKYGYTEMYVPYMVNSDSLQGTGQLPKFEEDLFKL--RGEKEYY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+  R  I S R+LP         FR E     R   G++R  +F   +  
Sbjct: 228 LIPTSEVPLTNSVRDTILSPRDLPIKLTAHTPCFRSEAGSAGRDTRGLIRQHQFEKVEMV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                    +    +M      +   L L    M   +G +G         E  + +   
Sbjct: 288 QVTRADSSMQAL-EQMTAQAEYVLQALELPYRVMTLCTGDMGFSAVKTYDIEVWLPSQNM 346

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS--LNSIVEQWTAPYAAT-----SDVHNEKLFDS 270
             ++    +  DF     +    D     L   +         T      +  N     +
Sbjct: 347 YREISSCSNCGDFQARRMSARLKDGKHSELVHTLNGSGLAVGRTLLAILENHQNADGTIT 406

Query: 271 LPENKRVSARGIE 283
           +P+  +    G+E
Sbjct: 407 IPKALQPYMGGLE 419


>gi|301311140|ref|ZP_07217068.1| serine--tRNA ligase [Bacteroides sp. 20_3]
 gi|300830714|gb|EFK61356.1| serine--tRNA ligase [Bacteroides sp. 20_3]
          Length = 424

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E    G +E+  PT+ ++     +G+      +M  
Sbjct: 164 GAGFPVYKGQGARLQRALINFFLDEARDAGYLEIMPPTVVNSASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CE---VDDLYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL--SHE 209
             EF   +    D  PE SK S+ +M      +  +L L    +R   G +        +
Sbjct: 281 LHEFSKVELVRIDK-PEHSKQSHQEMLNHVEGLLQKLELPYRILRLCGGDMSFTAALCFD 339

Query: 210 FIVLADTGETQV 221
           F V ++  +  +
Sbjct: 340 FEVYSEAQQRWL 351


>gi|254457173|ref|ZP_05070601.1| seryl-tRNA synthetase [Campylobacterales bacterium GD 1]
 gi|207085965|gb|EDZ63249.1| seryl-tRNA synthetase [Campylobacterales bacterium GD 1]
          Length = 416

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 77/205 (37%), Gaps = 12/205 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           +G K    +   +    ++ G  E+SVP L +      +G+   +  ++ ++   + + +
Sbjct: 169 MGAKLERALINFMLNFNSKRGFEEVSVPALVNRTALEGTGQLPKFEDDLYKI---DGQEL 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDA 160
              PT E  +T++++  I S   LP         FR E         G++R  +F   + 
Sbjct: 226 FLIPTAEVPVTNLYQDEILSADELPKKMTAYTSCFRKEAGAAGRDTRGMIRQHQFHKVEL 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
            +    P+ S+  +++M      I   L L    +   +G +G   +H    E  +    
Sbjct: 286 VALSK-PDESEVIFDEMVECASDILTALELPHRIVNLCTGDLGFSAAHTTDIEVWLPGQN 344

Query: 217 GETQVFCSKDFMDFPIPSENTDFDD 241
              ++    +  DF        F D
Sbjct: 345 QYREISSISNTRDFQARRAKIRFKD 369


>gi|150007194|ref|YP_001301937.1| seryl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|298377619|ref|ZP_06987571.1| serine--tRNA ligase [Bacteroides sp. 3_1_19]
 gi|149935618|gb|ABR42315.1| seryl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|298265638|gb|EFI07299.1| serine--tRNA ligase [Bacteroides sp. 3_1_19]
          Length = 424

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E    G +E+  PT+ ++     +G+      +M  
Sbjct: 164 GAGFPVYKGQGARLQRALINFFLDEARDAGYLEIMPPTVVNSASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+I+R  I   + LP         FR E     +   G+ R
Sbjct: 224 CE---VDDLYLIPTAEVPVTNIYRDVILDEKQLPIKNCAYTQCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL--SHE 209
             EF   +    D  PE SK S+ +M      +  +L L    +R   G +        +
Sbjct: 281 LHEFSKVELVRIDK-PEHSKQSHQEMLNHVEGLLQKLELPYRILRLCGGDMSFTAALCFD 339

Query: 210 FIVLADTGETQV 221
           F V ++  +  +
Sbjct: 340 FEVYSEAQQRWL 351


>gi|170582349|ref|XP_001896091.1| glycyl-tRNA synthetase [Brugia malayi]
 gi|158596781|gb|EDP35064.1| glycyl-tRNA synthetase, putative [Brugia malayi]
          Length = 763

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/379 (10%), Positives = 102/379 (26%), Gaps = 27/379 (7%)

Query: 93  MLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE--LRPRFGVM 150
           ++RL +     + +        +      +K Y  + F+          E          
Sbjct: 367 LIRLREFTMCEIEH-FVDPNNKSHPKFERVKDYNLILFSGCNQMDGAPAEILPIGNAVAK 425

Query: 151 RSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
           +         Y   +     +   +   + + +              ++  +      E 
Sbjct: 426 KLVANETLGYYMVRVHKYLMRVGVDPKRLRFRQHLANEMAHYACDCWDAEILTSYGWIEC 485

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDS 270
           + +AD     +          + +E    +  +          A          +++F  
Sbjct: 486 VGVADRACYDLSQHSXATGEKLVAEKVLSEPKVVQIIEAVPNKAVIGKIYKTEAKQIFTR 545

Query: 271 LPENKRVSARGIEVGHI------FYFGTKYSLPMSATFKGADGKDHYVQMGSYG------ 318
           L +        +E   +         G K              +        +       
Sbjct: 546 LEQLTLEEVEMLEKEIVSAGNAKLRCGDKEVELQKDYITIKRYEKKVYTEEFFPSVIEPS 605

Query: 319 IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIK------AHDQVCRDACEKIYARL 372
            G  R++ +V+E S   +              +  IK      + +       + + + L
Sbjct: 606 FGIGRIMYSVLEHSFRQRENDEQRVYFALPPIVAPIKCSVLPISSNPRFEPIMDAVRSEL 665

Query: 373 SKVGC-----DVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS-KVEIKHRLTGIR 426
            K        DV  DD    +G ++A  D +G P  + +  +  S+   V +++ +T  +
Sbjct: 666 VKFSVSYKQSDVIKDDSSGSLGRRYARTDAIGIPFGITIDFESESEPWTVTLRYSITMEQ 725

Query: 427 EDMSLEEVINYASHRFSNN 445
             + + +V    +   S  
Sbjct: 726 IRLKVNDVGKIVADLSSER 744



 Score = 43.6 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
           G+Y + P+G     N+  + R     +   +E+    L   ++   SG  D +   M++ 
Sbjct: 173 GLYDFGPMGCAMKANMINLWRNHFVLQENMLELDCSVLTPENVLKASGHVDRFSDWMVKD 232

Query: 97  ADRNDK 102
               + 
Sbjct: 233 LKTGEC 238


>gi|307206497|gb|EFN84523.1| Histidyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator]
          Length = 604

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/489 (13%), Positives = 135/489 (27%), Gaps = 76/489 (15%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHSKGIYSWL----PLGQK------------ALDNVNAII 57
           + + AE  +  L L+T +  +   G  + L    P G +             L+ + A+ 
Sbjct: 133 DKKIAEEVAKLLDLKTQLGEE--NGCPNKLILKTPKGTRDYSPEHMVLRMGVLEKIIAV- 189

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
                R GA  +  P  +  D+   +G+Y    K +  L D+  + +             
Sbjct: 190 ---FKRHGAETIDTPVFELKDVL--TGKYGEDSKLIYDLKDQGGEILALRYDLTVPFARY 244

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL------------ 165
                 S       ++  ++  RD      G  R  EF   D                  
Sbjct: 245 LAM---SKVASMKRYHIGKVYRRDNPSTTKGRYR--EFYQCDFDIAGQYDPMIPDVECIR 299

Query: 166 -----------TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLA 214
                       P   K ++  +             K   + +    +  +   E     
Sbjct: 300 VVTEALETLNLGPYMIKLNHRCILDGIFAACGIPPSKFRSICSAVDKLDKNPWEEVKKEM 359

Query: 215 --DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA-----------PYAATSD 261
             + G  +    K               ++     +++Q +A            Y +   
Sbjct: 360 IEEKGLDEHIADKVGKYVSQSGGMELITELKKDKDLMKQSSAVQGLDSMELLLKYCSIYK 419

Query: 262 VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY--SLPMSATFKGADGKDHYVQMGSYGI 319
           + ++  FD           G+    I         S+     +    G           +
Sbjct: 420 ILDKVKFDLSLARGLDYYTGVIYEAILCGDDVGVGSIAGGGRYDNLVGMFDNKNKNVPCV 479

Query: 320 GAM---RVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVG 376
           G       + +++E+    KG+    +     ++      H++       KI A L + G
Sbjct: 480 GVSLGVERIFSILEAKLTNKGLKMRSTETEVFVASAQKNMHEERM-----KIIADLWENG 534

Query: 377 CDVFW-DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                      ++  Q    +  G PL +IVG   ++  +V ++   T     +  + +I
Sbjct: 535 VKAEHSYKKNARLLVQLQFCEENGIPLAIIVGEGELAKGEVTLRVVSTRKETRVPRDNII 594

Query: 436 NYASHRFSN 444
                    
Sbjct: 595 EEIRKLLET 603


>gi|260424728|ref|ZP_05733081.2| serine--tRNA ligase [Dialister invisus DSM 15470]
 gi|260402970|gb|EEW96517.1| serine--tRNA ligase [Dialister invisus DSM 15470]
          Length = 440

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 71/221 (32%), Gaps = 15/221 (6%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRY 86
           R G +       Y +L +  +    V   + +    +    E+  P + +      +G+ 
Sbjct: 159 RAGKV--SGARFYFYLSMAARLERAVYNFMLDVHTQQNDFTEVIPPYIINGASMQGTGQL 216

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
             +  +M ++     + M   PT E  +T+ F   I     LP     +   FR E    
Sbjct: 217 PKFEDDMYKVE---GENMYMTPTAEVPLTNYFSGEILDGAVLPVHLTALTPCFRKEAGSA 273

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            +   G++R  +F   +   +    +        +     +I   L L    +   +G I
Sbjct: 274 GKDTRGLIRQHQFHKVEMVKYCKPEDSWDEL-ESLTAEAEKILQLLKLPYHVVCLCTGDI 332

Query: 203 GGD----LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           G         E  +       ++    + +DF     N  F
Sbjct: 333 GFSSAKTYDIEVWMPGQQKYREISSCSNCLDFQARRANIRF 373


>gi|292493548|ref|YP_003528987.1| seryl-tRNA synthetase [Nitrosococcus halophilus Nc4]
 gi|291582143|gb|ADE16600.1| seryl-tRNA synthetase [Nitrosococcus halophilus Nc4]
          Length = 429

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 84/242 (34%), Gaps = 22/242 (9%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHS---KG--IYSWLPLGQKALDNVNAIIREEQN-RTGAI 67
            P+D       L    GM  + +    G    +   L  +    +   + +      G  
Sbjct: 135 APKDHVDLGGPL----GMDFETAAKLSGARFVTLSGLLARLHRALIQFMLDVHTSEHGYT 190

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E+ VP L +      +G+   + +++  + D         PT E  +T++ R+ I     
Sbjct: 191 EVYVPYLVNRQSLEGTGQLPKFEEDLFAIRDTG---YYLIPTAEVPVTNLVRAEILPAER 247

Query: 128 LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           LP  +      FR E     +   G++R  +F  K      + P+ S  ++  +      
Sbjct: 248 LPLKYVAHTPCFRSEAGSYGKDTRGMIRQHQF-EKVELVQIVPPKDSPQAHENLTGHAEV 306

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           I  RLGL    M   +G +G   S     E  +       ++    +F+DF        +
Sbjct: 307 ILQRLGLPYRVMNLCAGDLGFASSKTYDLEVWLPGQQAYREISSCSNFLDFQARRLQARW 366

Query: 240 DD 241
            D
Sbjct: 367 RD 368


>gi|88801805|ref|ZP_01117333.1| seryl-tRNA synthetase [Polaribacter irgensii 23-P]
 gi|88782463|gb|EAR13640.1| seryl-tRNA synthetase [Polaribacter irgensii 23-P]
          Length = 424

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 3/117 (2%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G K    +     ++    G  E  VP L + +    +G+      +M  
Sbjct: 164 GAGFPVYKGKGAKLQRALINYFLDKNIEAGYKEFQVPHLVNVESATATGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
               N+  +   PT E  +T++FR++I    + P         FR E       +R 
Sbjct: 223 --HSNEDDLYLIPTGEVPITNMFRNNIVQESDFPICCTGYTPCFRREAGSYGAHVRG 277


>gi|167763155|ref|ZP_02435282.1| hypothetical protein BACSTE_01525 [Bacteroides stercoris ATCC
           43183]
 gi|167698449|gb|EDS15028.1| hypothetical protein BACSTE_01525 [Bacteroides stercoris ATCC
           43183]
          Length = 453

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 5/128 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ I   ++        +  ++ 
Sbjct: 329 FGMAGVSGVGISFGADRIFDVLNQLELYPKEAVNGTQLLFINFGEKEA-AFSMNVLTQVR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G       D    ++  Q   A+    P   +VG   +++ KV +K+  TG ++ ++ 
Sbjct: 388 AAGIRAEIFPD--SCKMKKQMGYANSKMIPFVALVGENEMNEGKVTLKNMETGEQKLITP 445

Query: 432 EEVINYAS 439
           EE+++  S
Sbjct: 446 EELVSELS 453


>gi|254495943|ref|ZP_05108851.1| seryl-tRNA synthetase [Legionella drancourtii LLAP12]
 gi|254354821|gb|EET13448.1| seryl-tRNA synthetase [Legionella drancourtii LLAP12]
          Length = 421

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 59/158 (37%), Gaps = 8/158 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +    + G  E+ VP + +AD  + +G+   + +++ +L    D+   
Sbjct: 164 ARVHRALIQFMLDIHTQQHGYQEIYVPYIVNADSLLGTGQLPKFEEDLFKL--NGDQGYY 221

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
              T E  +T+  R  + S   LP         FR E     +   G++R  +F   +  
Sbjct: 222 LTSTAEIPVTNTVRDMLLSEEVLPIRHACHSPCFRSEAGSYGKDTKGMIRQHQFEKVELV 281

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAES 199
                PE S  +  ++      I  RL L    +   +
Sbjct: 282 WI-TKPEDSYAALEQLTQHAEIILQRLELPYRVVALCT 318


>gi|300727856|ref|ZP_07061236.1| serine--tRNA ligase [Prevotella bryantii B14]
 gi|299774904|gb|EFI71516.1| serine--tRNA ligase [Prevotella bryantii B14]
          Length = 430

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 72/212 (33%), Gaps = 12/212 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +L    +    + A   +E  ++G +E+  P + +      +G+      +M  
Sbjct: 164 GAGFPIYLGKMARFQRALEAFFLDEARKSGYLEVQPPYVVNEASGYGTGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+IFR  I   ++LP         FR E     +   G+ R
Sbjct: 223 --HANLDNLYLIPTAEVPVTNIFRDVILDEKDLPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG----DLS 207
             +F   +    D TPE S  S  +M      +  +L L    +R   G +         
Sbjct: 281 LHQFDKVEIVRLD-TPEHSYESLKEMMDHVEGLLKKLELPYHILRLCGGDMSFTSAICYD 339

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            E    A     +V    +F  +        F
Sbjct: 340 FEVWSAAQKRWLEVSSVSNFESYQANRLKCRF 371


>gi|323141849|ref|ZP_08076713.1| serine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322413689|gb|EFY04544.1| serine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 426

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 13/209 (6%)

Query: 40  YSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
             +  +G +    V     +    + G  E   P + +      +G+   + ++M +L  
Sbjct: 163 VFYRGMGSRLERAVINFFLDVHTRKHGYTEFFPPFIVNGASMQGTGQLPKFAEDMYKLE- 221

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSRE 154
             +  M   PT E  +T+  R  I +   LP  +      FR E         G++R  +
Sbjct: 222 --NGDMYLIPTAEVPVTNYHRDDILTGDELPLKYTAYSACFRAEAGAAGRDTRGLIRMHQ 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEF 210
           F   +   F    E               +   LGL    +R  +G +G         E 
Sbjct: 280 FNKVELVKFTKPEESWAELDKLTND-AEEVLQLLGLPYHVVRLCTGDLGFSSATTYDLEV 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDF 239
            + A     ++    +F+DF     N  F
Sbjct: 339 WLPAANCYREISSCSNFLDFQARRANIRF 367


>gi|255654096|ref|ZP_05399505.1| seryl-tRNA synthetase [Clostridium difficile QCD-23m63]
 gi|296452479|ref|ZP_06894178.1| serine--tRNA ligase [Clostridium difficile NAP08]
 gi|296878247|ref|ZP_06902257.1| serine--tRNA ligase [Clostridium difficile NAP07]
 gi|296258685|gb|EFH05581.1| serine--tRNA ligase [Clostridium difficile NAP08]
 gi|296430755|gb|EFH16592.1| serine--tRNA ligase [Clostridium difficile NAP07]
          Length = 423

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 73/212 (34%), Gaps = 15/212 (7%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRY 86
           R G I         +  LG +   ++          + G  E+  P + + + ++ +G+ 
Sbjct: 154 RAGKI--TGSRFTLYRGLGARLERSLMNFFLNTHTAKHGYTEVLPPFMANRNSFIGTGQL 211

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
             + ++M ++           PT E  +T+I  + I     LP  +      FR E    
Sbjct: 212 PKFEEDMFKIE---GLEYFLIPTAEVPVTNIHANEILDVAELPIKYCAYTPCFRSEAGSA 268

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +   F    +      +        +   LGL    ++  +G +
Sbjct: 269 GRDTRGLVRQHQFNKVELVKFVKPEDSYNELESLTHD-AETMLQMLGLPYRVVKICTGDL 327

Query: 203 G----GDLSHEFIVLADTGETQVFCSKDFMDF 230
           G         E  + +     ++    +F DF
Sbjct: 328 GFTAAFKYDLEVWMPSYNRYVEISSCSNFEDF 359


>gi|297566462|ref|YP_003685434.1| histidyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
 gi|296850911|gb|ADH63926.1| histidyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
          Length = 430

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 115/412 (27%), Gaps = 35/412 (8%)

Query: 49  ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDS---YGKEMLRLADRNDKAMI 105
               +    ++    +GA  +  P  + A+++ +     S     KEM    DR ++ + 
Sbjct: 24  VFRYIVETAQKVLASSGAQPIHTPIFEYAEVFQKGVGLTSDIVVKKEMYVFEDRGERLLA 83

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFD 164
             P     +   +  H       P   +     FR E   +    R ++F   D      
Sbjct: 84  LRPEPTASIVRAYNEHGMKVWPQPVRLFTWGPIFRAERHQKG---RYKQFHQVDYEAIGS 140

Query: 165 LTPEGSKHSYNKMFVSYLR--------------IFHRLGLKSIPMRAESGPIGGDLSHEF 210
             P     S   M   Y                        +  +R    P    LS + 
Sbjct: 141 ADPLVDAESIALMVKIYRELGLQGLEVKLGSVGDPEDRLRYNAYLRELFRPHVKRLSQDS 200

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHN--EKLF 268
               ++   ++  SKD  D  +  E      +  L S    +        +       + 
Sbjct: 201 QARLESNPMRILDSKDPGDQALLGELQVKPMLEFLGSESSAFHQAVQRYLERLGIPFHVD 260

Query: 269 DSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIGAMRVVA 326
            S+        R     H    G K +L     + G         V    +GIG  RV  
Sbjct: 261 PSIVRGLDYYVRTAWEVHHRQIGAKSALGGGGRYDGLSEMLGGPRVPGVGFGIGIERVAI 320

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
           A+              S+ P     + +   D+  +     +  RL      V      +
Sbjct: 321 AL---------EEEGISIPPDPSPDLYLAPLDEAAKGEALSLAERLRPK-FRVEIGYSVK 370

Query: 387 QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
           ++G     A   G      +G        V +KH  +G + ++  E +    
Sbjct: 371 KVGKALEEALKRGARYVGFLGEAERQKGVVALKHLASGEQREVRWEALEEAL 422


>gi|225849021|ref|YP_002729185.1| seryl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643211|gb|ACN98261.1| seryl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 417

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 69/212 (32%), Gaps = 13/212 (6%)

Query: 47  QKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +   +  G  E+  P L  +     +G+   + +++ ++ D     + 
Sbjct: 172 ARLERALINFMLDVHTKQHGYTEVWTPLLVKSKTLQGTGQLPKFKEDLYKIEDE---DLY 228

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++    I     LP  +      FR E     +   G++R  +F   +  
Sbjct: 229 LIPTAEVTLTNLHADEIIPEDQLPKYYTAYTPCFRKEAGSHGKDVRGILRQHQFDKVELV 288

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                 +       K+     +I   L L    +   +G +G   +     E  + +   
Sbjct: 289 KIVKPEDSYNEL-EKLVNEAEKILQLLELPYRVVLLCTGDMGFSAAKTYDIEVWIPSQNR 347

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             ++    +  DF        + D    N  V
Sbjct: 348 YREISSCSNTEDFQARRAMIRYKDKEGKNHFV 379


>gi|213963556|ref|ZP_03391809.1| histidyl-tRNA synthetase [Capnocytophaga sputigena Capno]
 gi|213953836|gb|EEB65165.1| histidyl-tRNA synthetase [Capnocytophaga sputigena Capno]
          Length = 458

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/456 (14%), Positives = 120/456 (26%), Gaps = 69/456 (15%)

Query: 44  PLGQK--------ALDNVNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRYDSYG 90
           P G +          + +   I+   N  G   +  P+ ++ +        E  R     
Sbjct: 9   PKGTRDFSPTEVAKRNFIINTIKNAFNTFGFQPIETPSFENYNTLMGKYGEEGDRLIFKI 68

Query: 91  KEMLRLADRNDKAMIYGPTHEEVMTDIFRS---------------HIKSYRNLPFTFYQI 135
                      +        +++   +                    +S    PF  YQI
Sbjct: 69  LNSGDFTQGVKQEDWEAKNPQKLTPQLSEKALRYDLTVPFARYVVQHQSELTFPFKRYQI 128

Query: 136 QLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPM 195
           Q  +R +   +    R REF   DA     T    +  + +++ S     +  G+     
Sbjct: 129 QPVWRADRPQKG---RFREFYQCDADVVGSTSLWQEVEFVQLYDSVFTALNLKGVTIKIN 185

Query: 196 RAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS------ENTDFDDIISLNSIV 249
                        E I  +D                         E    ++ I+    +
Sbjct: 186 ----NRKILSGFAEMIGESDKLTDFTVALDKLDKIGEEGVIKEMKERGISEEAIAKLQPI 241

Query: 250 EQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKY-------SLPMSATF 302
                 +A       E L +S    K V         I   G +        +L     +
Sbjct: 242 FALKGSFAEKLSALKEILKNSETGLKGVEELEFIAQQINQLGLQTAILDLDVTLARGLNY 301

Query: 303 ---------------KGADGKDHYVQMGSYGIGAMRVVAAVIESSHD-----GKGIIWPD 342
                           G+ G        +   G   +    I    D      + +    
Sbjct: 302 YTGAIFEIAAPAGVQMGSIGGGGRYDDLTSIFGLKGMSGIGISFGLDRIGLVMEELNLFP 361

Query: 343 SVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPL 402
                 + ++ I   D        K+   L ++G          +I  Q   A+    P 
Sbjct: 362 ESLNSTVEVLCINFGDAEALQ-SMKLLKALRQLGKTAELYPDAAKIKKQMDYANKRNIPY 420

Query: 403 QVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYA 438
            VI+G   ++     +K+ L G +++ SL EV N  
Sbjct: 421 VVIIGESELAKGTFVLKNMLEGTQKECSLNEVSNAL 456


>gi|15618573|ref|NP_224859.1| histidyl-tRNA synthetase [Chlamydophila pneumoniae CWL029]
 gi|16752377|ref|NP_444636.1| histidyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|33242020|ref|NP_876961.1| histidyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
 gi|7674356|sp|Q9Z7P1|SYH_CHLPN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|4376962|gb|AAD18802.1| Histidyl tRNA Synthetase [Chlamydophila pneumoniae CWL029]
 gi|7189020|gb|AAF37970.1| histidyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|33236530|gb|AAP98618.1| histidyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
          Length = 430

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/415 (13%), Positives = 125/415 (30%), Gaps = 30/415 (7%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW----VESGRYDSYGKEMLRLADRNDK 102
                +V   I       G  E+  P  + ++++     ES   D   KE+    DR  +
Sbjct: 26  TSLWHSVEKAIHTVCMLYGFCEIRTPIFEKSEVFLHVGEES---DVVKKEVYSFLDRKGR 82

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
           +M   P     +   F  H  S+R+    FY I   FR E +      +  +F ++    
Sbjct: 83  SMTLRPEGTAAVVRSFLEHGASHRS-DNKFYYILPMFRYERQQAGRYRQHHQFGVEAIGV 141

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVLADTG 217
               P         ++  Y     R+GL+ + ++             D      +    G
Sbjct: 142 RH--PLRDAEVLALLWDFYS----RVGLQHMQIQLNFLGGSETRFRYDKVLRAYLKESMG 195

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------ 271
           E      + F    +   ++   +   +           +     +  ++ D+L      
Sbjct: 196 ELSALSQQRFSTNVLRILDSKEPEDQEIIRQAPPILDYVSDEDLKYFNEILDALRVLEIP 255

Query: 272 --PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                + V         +F   T +      ++    G  +   + ++G  ++      +
Sbjct: 256 YAINPRLVRGLDYYSDLVFEATTTFQE---VSYALGGGGRYDGLISAFGGASLPACGFGV 312

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                 + ++    + P     + +   +      C +    L ++G     D   +++ 
Sbjct: 313 GLERAIQTLLAQKRIEPQFPHKLRLIPMEPDADQFCLEWSQHLRRLGIPTEVDWSHKKVK 372

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
                A         ++G + +   ++ IK+         + EEV     +   N
Sbjct: 373 GALKAASTEQVSFVCLIGERELISQQLVIKNMSLRKEFFGTKEEVEQRLLYEIQN 427


>gi|124267184|ref|YP_001021188.1| histidyl-tRNA synthetase [Methylibium petroleiphilum PM1]
 gi|124259959|gb|ABM94953.1| histidyl-tRNA synthetase [Methylibium petroleiphilum PM1]
          Length = 443

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/427 (14%), Positives = 112/427 (26%), Gaps = 23/427 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +     +R    R G   +  P ++   L+V   G   D   KEM  
Sbjct: 20  GMNDLLPPESARWEWFEDAVRRVMQRYGYAAVRTPIVEPTALFVRGLGEVTDIVEKEMYS 79

Query: 96  LADRNDKA-MIYGPTHEEVMTDIFRSHIKSYR---NLPFTFYQIQLKFRDELRPRFGVMR 151
             D  +   +   P     +      H   Y     L +     + +   + R R     
Sbjct: 80  FTDNMNGDQLTLRPEGTAGVVRAVTEHSLLYEGGKRLYYLGAMFRHERPQKGRYRQFHQA 139

Query: 152 SREFLMKDAYSFD-----LTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
             E L       D     +     +              + LG         +  I    
Sbjct: 140 GAEALGFHGPDVDAELILMCRALWRELGLIEGRDLWLEINSLGQPEERRAHRAALIAHLE 199

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPYAATSDVHNE 265
           +H  ++  D            +D   P      D     ++ + E   A + A   V + 
Sbjct: 200 AHADLLDDDAKRRLHSNPLRILDTKTPVMQAVVDAAPRLIDFLGEASLAHFDAVRAVLDA 259

Query: 266 KLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVV 325
                    + V         +F + T   +    T  G    D  ++            
Sbjct: 260 AGLPYRINPRLVRGMDYYNLTVFEWVTDR-MGAPLTVGGGGRYDSLIEQLGGKPAPGVGW 318

Query: 326 AAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWD--- 382
              IE        +   +      +   + A   +       +   L   G  V      
Sbjct: 319 GLGIERLLLLLDAVGVVTPPRLPDAYAVLPAAAALPTAMV--LIEALRAHGASVVLHPAG 376

Query: 383 -DMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI----REDMSLEEVINY 437
            D    + SQF  AD  G    ++ G+  ++   V +K    G     +    L++   +
Sbjct: 377 KDGPASMKSQFKKADASGARHALVFGADELAQGMVALKPLRAGEGAATQVLRPLDDPAAW 436

Query: 438 ASHRFSN 444
           A     +
Sbjct: 437 AGELLRS 443


>gi|255018988|ref|ZP_05291114.1| histidyl-tRNA synthetase [Listeria monocytogenes FSL F2-515]
          Length = 115

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 32/81 (39%)

Query: 360 VCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIK 419
                   +  +L + G     D +  +  +Q   A+       +I+G + +     ++K
Sbjct: 30  EAELKAVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLK 89

Query: 420 HRLTGIREDMSLEEVINYASH 440
           +  TG +E +S   ++   S+
Sbjct: 90  NMETGEQEAVSETTILEKLSN 110


>gi|298530167|ref|ZP_07017569.1| seryl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509541|gb|EFI33445.1| seryl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 425

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 69/195 (35%), Gaps = 17/195 (8%)

Query: 15  PRDAEIASHKLMLRTGMIHQHSK---G--IYSWLPLGQKALDNVNAIIREEQN-RTGAIE 68
           PR+      +L    G+  +H+    G     ++  G +    +   + + Q    G +E
Sbjct: 136 PREHWDLGVEL---GGLDFEHAAKMTGSRFVMYVGWGARLERALINFMLDVQTGEHGYME 192

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
              P + + D    +G+   +  ++ +L    +      PT E  +T+I R  +     L
Sbjct: 193 TMPPMIVNRDSMTATGQLPKFADDLFKLE---NWEYYLIPTAEVPLTNIHRGEVLQEDQL 249

Query: 129 PFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E     +   G++R  +F  K        P+ S      +      I
Sbjct: 250 PLAYTAFTGCFRSEAGSHGKDTRGIIRQHQFN-KVELVRFAHPDDSFKQLELLLGHAEEI 308

Query: 185 FHRLGLKSIPMRAES 199
             RLGL    +   +
Sbjct: 309 LKRLGLHYRVVNLCT 323


>gi|264679422|ref|YP_003279329.1| histidyl-tRNA synthetase [Comamonas testosteroni CNB-2]
 gi|262209935|gb|ACY34033.1| histidyl-tRNA synthetase [Comamonas testosteroni CNB-2]
          Length = 438

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/417 (15%), Positives = 107/417 (25%), Gaps = 33/417 (7%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES-GRY-DSYGKEMLR 95
           G+   LP      +   A +R+   R     M  P ++   L+V   G   D   KEM  
Sbjct: 12  GMNDILPPDSARWEWFEAKVRDLMGRFAYRNMRTPIVEPTALFVRGLGEVTDIVEKEMYS 71

Query: 96  LADRNDKA-----MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP---RF 147
             DR DK      +   P     +      +   Y      FY  Q+  R++ +    R 
Sbjct: 72  FEDRADKHGQAEHLTLRPEGTAGVVRSVVENNLLYEGGKRLFYIGQMFRREKPQRGRYRQ 131

Query: 148 GVMRSREFLMKDAYSFDLTPEGSKH--SYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD 205
                 E L       D                       + LG            I   
Sbjct: 132 FHQVGVEALGFAGPELDAEVILLAAQLWKELGIEGVRLELNSLGQPEERKTHREALIAYF 191

Query: 206 LSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV-EQWTAPYAATSDVHN 264
             H  ++  +            +D   P+     +    L   + +   A   A  D+ +
Sbjct: 192 EQHTEVMDEEAKRRMYSNPLRVLDTKNPAMQEMVNAAPRLMDYLGDASKAHLKAVQDILD 251

Query: 265 EK-----LFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGI 319
                  L   L          +        G++ ++     +     +       + G 
Sbjct: 252 ANDVAWSLNPRLVRGMDYYNLTVFEFITDKLGSQSTICGGGRYDYLIEEIGGKPAPAVGW 311

Query: 320 GAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDV 379
           G        +      +       V             D        K   +L   G  V
Sbjct: 312 GMGVERVLEVLKEVGVEIPQPAADVYAIIP--------DASVLPQVFKTVQQLRAAGVAV 363

Query: 380 FWDD----MGEQIGSQ---FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
                     E +GS    F  AD  G    +I GS  ++  KV +K    G  + +
Sbjct: 364 QMHAAAGGSAEGMGSMKSQFKKADGSGARFALIFGSDELAQGKVTVKSLRDGEGQQV 420


>gi|326577649|gb|EGE27526.1| seryl-tRNA synthetase [Moraxella catarrhalis O35E]
          Length = 422

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 83/253 (32%), Gaps = 19/253 (7%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            K    +   + +    + G  EM VP + ++D    +G+   + +++ +L  R +K   
Sbjct: 170 AKLNRALVQFMLDTHTQKYGYTEMYVPYMVNSDSLQGTGQLPKFEEDLFKL--RGEKEYY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+  R  I S R+LP         FR E     R   G++R  +F   +  
Sbjct: 228 LIPTSEVPLTNSVRDTILSPRDLPIKLTAHTPCFRSEAGSAGRDTRGLIRQHQFEKVEMV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                    +     M      +   L L    M   +G +G         E  + +   
Sbjct: 288 QVTRADSSMQAL-EDMTAQAEYVLQALELPYRVMTLCTGDMGFSAVKTYDIEVWLPSQNM 346

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS--LNSIVEQWTAPYAAT-----SDVHNEKLFDS 270
             ++    +  DF     +    D     L   +         T      +  N     +
Sbjct: 347 YREISSCSNCGDFQARRMSARLKDGKHSELVHTLNGSGLAVGRTLLAILENHQNADGTIT 406

Query: 271 LPENKRVSARGIE 283
           +P+  +    G+E
Sbjct: 407 IPKALQPYMGGLE 419


>gi|322786149|gb|EFZ12755.1| hypothetical protein SINV_08710 [Solenopsis invicta]
          Length = 107

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 347 FKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDM-GEQIGSQFAVADLLGFPLQVI 405
           +   +  + + ++      E+++   S+   D   DD     IG +  +A  LG+P  ++
Sbjct: 7   YLKYVYIVGSKEEDTSIYVEQLFKIFSERDIDAILDDRTNYTIGKRLVLARALGYPYIIV 66

Query: 406 VGSKFVSDSKV---EIKHRLTGIREDMSLEEVINYASH-RFSN 444
           +G    +   +   E+         ++SL+++ +Y ++ +F N
Sbjct: 67  IGK--AATQSIPLFEVHDINNSTYFELSLDQINDYFNNIKFKN 107


>gi|254973664|ref|ZP_05270136.1| seryl-tRNA synthetase [Clostridium difficile QCD-66c26]
 gi|255091055|ref|ZP_05320533.1| seryl-tRNA synthetase [Clostridium difficile CIP 107932]
 gi|255312709|ref|ZP_05354292.1| seryl-tRNA synthetase [Clostridium difficile QCD-76w55]
 gi|255515469|ref|ZP_05383145.1| seryl-tRNA synthetase [Clostridium difficile QCD-97b34]
 gi|255648561|ref|ZP_05395463.1| seryl-tRNA synthetase [Clostridium difficile QCD-37x79]
 gi|260681783|ref|YP_003213068.1| seryl-tRNA synthetase [Clostridium difficile CD196]
 gi|260685380|ref|YP_003216513.1| seryl-tRNA synthetase [Clostridium difficile R20291]
 gi|306518690|ref|ZP_07405037.1| seryl-tRNA synthetase [Clostridium difficile QCD-32g58]
 gi|260207946|emb|CBA60065.1| seryl-tRNA synthetase [Clostridium difficile CD196]
 gi|260211396|emb|CBE01468.1| seryl-tRNA synthetase [Clostridium difficile R20291]
          Length = 423

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 73/212 (34%), Gaps = 15/212 (7%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRY 86
           R G I         +  LG +   ++          + G  E+  P + + + ++ +G+ 
Sbjct: 154 RAGKI--TGSRFTLYRGLGARLERSLMNFFLNTHTAKHGYTEVLPPFMANRNSFIGTGQL 211

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
             + ++M ++           PT E  +T+I  + I     LP  +      FR E    
Sbjct: 212 PKFEEDMFKIE---GLEYFLIPTAEVPVTNIHANEILDVAELPIKYCAYTPCFRSEAGSA 268

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +   F    +      +        +   LGL    ++  +G +
Sbjct: 269 GRDTRGLVRQHQFNKVELVKFVKPEDSYNELESLTHD-AETMLQMLGLPYRVVKICTGDL 327

Query: 203 G----GDLSHEFIVLADTGETQVFCSKDFMDF 230
           G         E  + +     ++    +F DF
Sbjct: 328 GFTAAFKYDLEVWMPSYNRYVEISSCSNFEDF 359


>gi|289662416|ref|ZP_06483997.1| seryl-tRNA synthetase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289667711|ref|ZP_06488786.1| seryl-tRNA synthetase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 426

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 66/204 (32%), Gaps = 11/204 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP L +AD    +G+   +  ++    +  +    
Sbjct: 171 ARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFEDDLF-QTEVGESRRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 230 LIPTSEVPLTNIVRDEIVDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           +     +               +  +LGL    +   +G +G         E  + +   
Sbjct: 290 TACAPEDSDAEHQRMTR-CAELVLEQLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF        + +
Sbjct: 349 YREISSCSNCGDFQARRMQARWRN 372


>gi|254468456|ref|ZP_05081862.1| seryl-tRNA synthetase [beta proteobacterium KB13]
 gi|207087266|gb|EDZ64549.1| seryl-tRNA synthetase [beta proteobacterium KB13]
          Length = 425

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 70/212 (33%), Gaps = 10/212 (4%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E   P L + D  + +G+   +G ++      +D+++ 
Sbjct: 169 ARLHRAIGQFMIDTHTENHGYTEYYTPYLVNGDSLLGTGQLPKFGDDLFVTQKNDDESLY 228

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+  R  I   ++LP         FR E     +   G++R  +F   +  
Sbjct: 229 LIPTSEVSLTNSVRDEIIDAKHLPIRMTAHTPCFRSEAGSYGKDTRGMIRQHQFDKVEMV 288

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLADTG 217
                      +  +M      I   L L    M   SG +          E  + +   
Sbjct: 289 QITKPELSY-EALEEMLSHAENILKALDLPYRVMTLSSGDMGFGAAKTYDIEVWLPSQEQ 347

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             ++    +  DF        F +    N++V
Sbjct: 348 YREISSISNCEDFQARRLKARFKNQEGKNTLV 379


>gi|282866230|ref|ZP_06275277.1| histidyl-tRNA synthetase [Streptomyces sp. ACTE]
 gi|282559014|gb|EFB64569.1| histidyl-tRNA synthetase [Streptomyces sp. ACTE]
          Length = 420

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/394 (12%), Positives = 109/394 (27%), Gaps = 16/394 (4%)

Query: 61  QNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
              +G   +  P  +  +L+        D   KEM     +    +   P     +    
Sbjct: 32  LRNSGYGYIETPGFEDVNLFARGVGESTDIVSKEMYAFETKGGDKLALRPEGTASVLRAA 91

Query: 119 RSHIKS-YRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAY-SFDLTPEGSKHSYNK 176
                    NLP   +     +R E   +    R R F    A       P         
Sbjct: 92  LEANLHKAGNLPVKLWYSGSYYRYERPQKG---RYRHFSQVGAEAIGAEDPALDAELIIL 148

Query: 177 MFVSYLRIFHRLGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPS 234
              +Y  +        +    +    P+  +    F+   D  E      +      +  
Sbjct: 149 ADQAYRSLGLSEFRILLNSLGDKECRPVYREALQGFLRDLDLDEETRRRIEINPLRVLDD 208

Query: 235 ENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLP---ENKRVSARGIEVGHIFYFG 291
           + T+    ++   ++  +              L  +     E+     RG++      F 
Sbjct: 209 KRTEVQKQLTGAPMLRDYLCDACKAYHEEVRTLLTAAGVVYEDDEKLVRGLDYYTRTTFE 268

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISL 351
             +    S +  G  G+   +     G     V  A+               +     + 
Sbjct: 269 FVHDGLGSQSAVGGGGRYDGLSEMIGGPALPSVGWALGVDRTVLALEAEGIELDIPATTS 328

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDD--MGEQIGSQFAVADLLGFPLQVIVGSK 409
           +      +  R     +   L K G    +     G + G+    A+  G    V+ G +
Sbjct: 329 VYAVPLGEEARRVLFGLVTELRKAGVATDFAFGGRGLK-GAM-KSANRSGARYTVVAGER 386

Query: 410 FVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
            +++  V++K   +G +  +++ +++       +
Sbjct: 387 DLAEGNVQLKDMESGDQRPVAVGDLVAVVQGELA 420


>gi|126697580|ref|YP_001086477.1| seryl-tRNA synthetase [Clostridium difficile 630]
 gi|255099171|ref|ZP_05328148.1| seryl-tRNA synthetase [Clostridium difficile QCD-63q42]
 gi|255304951|ref|ZP_05349125.1| seryl-tRNA synthetase [Clostridium difficile ATCC 43255]
 gi|115249017|emb|CAJ66828.1| Seryl-tRNA synthetase 1 [Clostridium difficile]
          Length = 423

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 73/212 (34%), Gaps = 15/212 (7%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRY 86
           R G I         +  LG +   ++          + G  E+  P + + + ++ +G+ 
Sbjct: 154 RAGKI--TGSRFTLYRGLGARLERSLMNFFLNTHTAKHGYTEVLPPFMANRNSFIGTGQL 211

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL--- 143
             + ++M ++           PT E  +T+I  + I     LP  +      FR E    
Sbjct: 212 PKFEEDMFKIE---GLEYFLIPTAEVPVTNIHANEILDVAELPIKYCAYTPCFRSEAGSA 268

Query: 144 -RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            R   G++R  +F   +   F    +      +        +   LGL    ++  +G +
Sbjct: 269 GRDTRGLVRQHQFNKVELVKFVKPEDSYNELESLTHD-AETMLQMLGLPYRVVKICTGDL 327

Query: 203 G----GDLSHEFIVLADTGETQVFCSKDFMDF 230
           G         E  + +     ++    +F DF
Sbjct: 328 GFTAAFKYDLEVWMPSYNRYVEISSCSNFEDF 359


>gi|325971158|ref|YP_004247349.1| histidyl-tRNA synthetase [Spirochaeta sp. Buddy]
 gi|324026396|gb|ADY13155.1| Histidyl-tRNA synthetase [Spirochaeta sp. Buddy]
          Length = 444

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 60/440 (13%), Positives = 127/440 (28%), Gaps = 53/440 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   +LP  +     + + +    +  G + +  P L+  ++ +  G  ++  K++    
Sbjct: 18  GFRDFLPAMEIPKKAIISKLETHFSSYGFVPIDTPVLEYTEVLLGKGGGET-DKQIFHFK 76

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           D  ++ +                H  S   LPF  + I   +R E   +    R REF  
Sbjct: 77  DNGEREVALRFDLTVPFARFLAQHQ-SELALPFKRFHIDKVWRGENPQKG---RFREFTQ 132

Query: 158 KDAYSFDLTPEGSKHSYNKM---------FVSYLRIFHRLGLKSIP-----------MRA 197
            D     +    +      M            Y       GL +                
Sbjct: 133 CDFDIVGVDNAEADFEILSMMNSSFSVIGIEDYQFCIAHRGLFNAFLSHLGVLDKSTEIL 192

Query: 198 ESGPIGGDLSH--------EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            +      +          E    ++  E  +       +    S  T  + +  L    
Sbjct: 193 RTVDKLRKIGKQEVASQLAEITTSSEKAEQILSYIHKEDEN--ESFLTTLNRLSVLAGNE 250

Query: 250 EQWTA------PYAATSDVHNEKLFDSLPENKRVSARGIEVGH-IFYFGTKYSLPMSATF 302
           E  T        Y   + + +  +FD           GI     +       S+     +
Sbjct: 251 EVHTKRMQTIYYYLKNAGIESHFVFDPSITRGLDYYTGIVYETFLTDLPNFGSVCSGGRY 310

Query: 303 KGADGKDHYVQMGSYG--IGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
                      +   G  IG  R++AA+          +    VA    + + I   D  
Sbjct: 311 NDLASLYTKENLPGVGSSIGLDRLLAAL--------EELKSPIVASTSSADVAILNTDMT 362

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKH 420
                + I   L K G  V      +++ +Q+  A+       ++   +   +++  +K+
Sbjct: 363 SFAYYDTIARALRKTGLRVCVYLADKKLAAQYKWAENNAITYAILASKEEEEENRFTLKN 422

Query: 421 RLTGIRE-DMSLEEVINYAS 439
             +      ++LEE ++   
Sbjct: 423 LGSRENYPSLTLEEALSILQ 442


>gi|110589390|gb|ABG77204.1| seryl-tRNA synthetase class IIa [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 312

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 86/257 (33%), Gaps = 21/257 (8%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           PL  +    +  ++ +   + G  E  VP L ++D    +G+   + +E+ +L    +  
Sbjct: 58  PL-ARMHRALIQLMLDTHIQHGYTEAYVPYLVNSDSLRGTGQLPKFEEELFKLQ--GEHE 114

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T++ R  I     +P  +      FR E     +   G++R  +F   +
Sbjct: 115 YYLIPTAEVPLTNLVRDVIIDADEMPRRYVAHTPCFRSEAGSYGKDTRGMIRQHQFEKVE 174

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                   +       ++      I  +L L    +   +G IG   +     E  +   
Sbjct: 175 LVQIVRAEDSFDAL-EQLTSHAEAILQKLELPYRVVTLCTGDIGFSATKTYDLEVWLPGQ 233

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDD----IISLNSIVEQWTAPYAATSDVHNEKLFDS- 270
               ++    +F+DF        + +       L   V         T     E   D+ 
Sbjct: 234 GKYREISSCSNFVDFQARRLQARWRNPETGKPELVHTVNGSGLAVGRTLVAVMENYQDAE 293

Query: 271 ----LPENKRVSARGIE 283
               +PE  R    GIE
Sbjct: 294 GRVRVPEALRPYMGGIE 310


>gi|326563744|gb|EGE13995.1| seryl-tRNA synthetase [Moraxella catarrhalis 46P47B1]
 gi|326566764|gb|EGE16903.1| seryl-tRNA synthetase [Moraxella catarrhalis 103P14B1]
 gi|326567394|gb|EGE17509.1| seryl-tRNA synthetase [Moraxella catarrhalis BC1]
 gi|326569919|gb|EGE19969.1| seryl-tRNA synthetase [Moraxella catarrhalis BC8]
 gi|326571480|gb|EGE21495.1| seryl-tRNA synthetase [Moraxella catarrhalis BC7]
 gi|326575237|gb|EGE25165.1| seryl-tRNA synthetase [Moraxella catarrhalis CO72]
 gi|326576676|gb|EGE26583.1| seryl-tRNA synthetase [Moraxella catarrhalis 101P30B1]
          Length = 422

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 83/253 (32%), Gaps = 19/253 (7%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            K    +   + +    + G  EM VP + ++D    +G+   + +++ +L  R +K   
Sbjct: 170 AKLNRALVQFMLDTHTQKYGYTEMYVPYMVNSDSLQGTGQLPKFEEDLFKL--RGEKEYY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+  R  I S ++LP         FR E     R   G++R  +F   +  
Sbjct: 228 LIPTSEVPLTNSVRDTILSPKDLPIKLTAHTPCFRSEAGSAGRDTRGLIRQHQFEKVEMV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                    +     M      +   L L    M   +G +G         E  + +   
Sbjct: 288 QVTRADSSMQAL-EDMTAQAEYVLQALELPYRVMTLCTGDMGFSAVKTYDIEVWLPSQNM 346

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS--LNSIVEQWTAPYAAT-----SDVHNEKLFDS 270
             ++    +  DF     +    D     L   +         T      +  N     +
Sbjct: 347 YREISSCSNCGDFQARRMSARLKDGKHSELVHTLNGSGLAVGRTLLAILENHQNADGTIT 406

Query: 271 LPENKRVSARGIE 283
           +P+  +    G+E
Sbjct: 407 IPKALQPYMGGLE 419


>gi|296112762|ref|YP_003626700.1| seryl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|295920456|gb|ADG60807.1| seryl-tRNA synthetase [Moraxella catarrhalis RH4]
          Length = 443

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 83/253 (32%), Gaps = 19/253 (7%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            K    +   + +    + G  EM VP + ++D    +G+   + +++ +L  R +K   
Sbjct: 191 AKLNRALVQFMLDTHTQKYGYTEMYVPYMVNSDSLQGTGQLPKFEEDLFKL--RGEKEYY 248

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+  R  I S ++LP         FR E     R   G++R  +F   +  
Sbjct: 249 LIPTSEVPLTNSVRDTILSPKDLPIKLTAHTPCFRSEAGSAGRDTRGLIRQHQFEKVEMV 308

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                    +     M      +   L L    M   +G +G         E  + +   
Sbjct: 309 QVTRADSSMQAL-EDMTAQAEYVLQALELPYRVMTLCTGDMGFSAVKTYDIEVWLPSQNM 367

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS--LNSIVEQWTAPYAAT-----SDVHNEKLFDS 270
             ++    +  DF     +    D     L   +         T      +  N     +
Sbjct: 368 YREISSCSNCGDFQARRMSARLKDGKHSELVHTLNGSGLAVGRTLLAILENHQNADGTIT 427

Query: 271 LPENKRVSARGIE 283
           +P+  +    G+E
Sbjct: 428 IPKALQPYMGGLE 440


>gi|213610082|ref|ZP_03369908.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 280

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 24/115 (20%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ--------- 391
                   +  I + A     + A   +  RL             E  G +         
Sbjct: 176 NPEFIASPVVDIYLVAAGAQTQSAAMTLAERL-----------RDEMPGVKLMTNHGGGN 224

Query: 392 ----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               FA AD  G  + +++G   V+D  V +K   +G +  ++ + V  +     
Sbjct: 225 FKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVAQDSVAAHLRTLL 279


>gi|213581534|ref|ZP_03363360.1| histidyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 192

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 24/115 (20%)

Query: 341 PDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQ--------- 391
                   +  I + A     + A   +  RL             E  G +         
Sbjct: 88  NPEFIASPVVDIYLVAAGAQTQSAAMTLAERL-----------RDEMPGVKLMTNHGGGN 136

Query: 392 ----FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRF 442
               FA AD  G  + +++G   V+D  V +K   +G +  ++ + V  +     
Sbjct: 137 FKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVAQDSVAAHLRTLL 191


>gi|182416712|ref|ZP_02948112.1| histidyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237667747|ref|ZP_04527731.1| histidine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379437|gb|EDT76931.1| histidyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237656095|gb|EEP53651.1| histidine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 431

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 61/428 (14%), Positives = 137/428 (32%), Gaps = 46/428 (10%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESGRYDSYGKEMLR 95
            G    LP  Q+  D++ + I+      G + +  P ++ A+ L  ++G      ++ + 
Sbjct: 12  PGFMELLPKEQEIFDDMVSKIKTVYEDNGCLAIDTPIIEKAEVLLAKTG---GETEKQVY 68

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
              +    +                +       PF  YQI   +R E   +    R REF
Sbjct: 69  NFQKGKNQLALRFDLTVPFARYVAQYYND-LVFPFKRYQIGKVYRGERNQKG---RYREF 124

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG--------DLS 207
              D        + S  +   +     + F  +GL     +  +  I          D  
Sbjct: 125 YQCDIDVIGK-EKLSIGNDAWVISLASKAFKSIGLIDYRFQISNRKILKGILSELKIDND 183

Query: 208 HEFIVLADTGETQ-VFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEK 266
           +E ++L D  +          ++  I +E +++ + +   +   +      +  ++ N+ 
Sbjct: 184 NEVMILIDKYDKVGKDVFSKELENIIGTEKSNYINKVLDLNGTNKEIIEELSKLNLENKY 243

Query: 267 LFDSLPENKRVSA-------------------RGIEV--GHIFYFGTKYSLPMSATFKGA 305
             + + E K+V                     RG++   G +F      +    +   G 
Sbjct: 244 FIEGIEELKKVCYTLSMLGVSEEEFEINLKIIRGLDYYTGTVFETILVGNEGYGSICSGG 303

Query: 306 DGKDHYVQMGS---YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCR 362
              +      +    G+G    +  +     +   I   +        +I I        
Sbjct: 304 RYDNLAENYTNNILPGVGISIGLTRLFFVLKEIGFIDKYEMKNKLDYLIIPIGD----TI 359

Query: 363 DACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
           + C ++   L   G  V        +  +    + LG    +++G   V   +V+IK+ +
Sbjct: 360 EYCIEVMNYLQDNGKKVTVYFEDNSLKKKMNYTNKLGINNVILIGEDEVEMKEVKIKNMI 419

Query: 423 TGIREDMS 430
           TG   ++ 
Sbjct: 420 TGDSRNVD 427


>gi|148262370|ref|YP_001229076.1| seryl-tRNA synthetase [Geobacter uraniireducens Rf4]
 gi|189083570|sp|A5GD47|SYS_GEOUR RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|146395870|gb|ABQ24503.1| seryl-tRNA synthetase [Geobacter uraniireducens Rf4]
          Length = 422

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 69/205 (33%), Gaps = 13/205 (6%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +    R   +EM  P + + +    +G+   + +++           
Sbjct: 168 GARLERALINFMLDLHTERHKYLEMLPPFMVNRESMTGTGQLPKFEEDLF---HMEGVDY 224

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I R  I    +LP  +      FR E     +   G++R  +F   + 
Sbjct: 225 FLIPTAEVPVTNIHRGEILKAADLPLCYTAYTPCFRKEAGSYGKDTRGLIRQHQFNKVEL 284

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F           +K+  +   +   LGL    +   +  IG   +     E  +    
Sbjct: 285 VKFVHPAHSYNEL-DKLLDNAEEVLRLLGLPYRVVDLCTADIGFSAARTYDIEVWLPGQD 343

Query: 217 GETQVFCSKDFMDFPIPSENTDFDD 241
              ++    +F DF     +  F +
Sbjct: 344 CYREISSCSNFEDFQARRASIRFRE 368


>gi|49899736|gb|AAH76748.1| LOC445827 protein [Xenopus laevis]
          Length = 514

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/496 (12%), Positives = 134/496 (27%), Gaps = 74/496 (14%)

Query: 11  LQENPRD----AEIASHKLMLRTG---------MIHQHSKGIYSWLPLGQKALDNVNAII 57
           L++        AE  +  L L+            + +  KG   + P      + V   I
Sbjct: 24  LKQEKASSEAIAEEVAKLLELKAQLGTDDGKHKFVLKTPKGTRDYNPKQMAIREKVFNTI 83

Query: 58  REEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDI 117
            +   R GA  +  P  +  +    +G+Y    K +  L D+  + +             
Sbjct: 84  IKCFKRHGAETIDTPVFELKETL--TGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA-- 139

Query: 118 FRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL-TPEGSKHSYNK 176
                 +   +         K      P     R REF   D        P        K
Sbjct: 140 ---RYLAMNKITNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLK 196

Query: 177 MFVSYLRIFHR-------------LGLKSIPMRAES--GPIGGDLSHEFIVLADTGETQV 221
           +    L                   G+ ++    +S    I   +        +  + ++
Sbjct: 197 IVHEILSELDLGEFLIKVNDRRILDGMFAVCGVPDSKFRTICSSVDKLDKSPWEEVKNEM 256

Query: 222 FCSKDFMDFPIPS----------------------------ENTDFDDIISLNSIVEQWT 253
              K                                          +D+ +L   +E + 
Sbjct: 257 VGEKGLAPEAADQIGGYVQRNGGLDLIEQLIKDPKLSQNKLAIEGLNDMKTLFEFLELFG 316

Query: 254 APYAATSDVHNEKLFDS----LPENKRVSARGI---EVGHIFYFGTKYSLPMSATFKGAD 306
                + D+   +  D     + E   V  +G+   +  H+    +  S+     + G  
Sbjct: 317 VTDKVSFDLSLARGLDYYTGVIYEAVLVQNQGVAQQQNDHVEESVSVGSVAGGGRYDGLV 376

Query: 307 GKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACE 366
           G           +G    +      S   +     +       + + + A  +   +   
Sbjct: 377 GMFDPKGRKVPCVGVS--IGIERIFSIMEQKAEASEEKIRTTETQVLVAAAQKKLLEERM 434

Query: 367 KIYARLSKVGCDVF-WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           K+ + L   G           ++ +Q    +  G PL  I+G + + D  V+++   T  
Sbjct: 435 KLISELWNAGIKAEMLYKKNPKLLNQLQYCEESGIPLVAIIGEQELKDGVVKLRVVATRE 494

Query: 426 REDMSLEEVINYASHR 441
             D++ + ++     R
Sbjct: 495 EVDVARQNLVEEIHKR 510


>gi|327270491|ref|XP_003220023.1| PREDICTED: histidyl-tRNA synthetase, cytoplasmic-like [Anolis
           carolinensis]
          Length = 503

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/454 (11%), Positives = 121/454 (26%), Gaps = 40/454 (8%)

Query: 28  RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADL-WVESGRY 86
           R  +I +  KG   + P      +N+ A I     R GA+ +  P  +  +L +  SG  
Sbjct: 53  RENIILKTPKGTRDFSPKQMAIRENIFATIISCFKRHGAVTIDTPVFERKELLFENSG-- 110

Query: 87  DSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
               + +  L D+  + +                +  ++          +       R R
Sbjct: 111 -DDSELVYDLKDQGGELLSLRYDLTVPFARYLAMNKITHFKRYQIGKVYRRDSPTMARGR 169

Query: 147 FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDL 206
           +      +F +   Y   +         +++  +       + +    +        G  
Sbjct: 170 YREFCQCDFDIAGQYDPMIPDAECLKIMHEILSALQFGDFLIRVNDRRILNGIFTACGVS 229

Query: 207 SHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSD----- 261
              F+    T +     + + +   +  E   + + +       +     +   +     
Sbjct: 230 EKNFLSACSTLDKLDKMTWEEVKREMVKERGLYPEAVDHLGEYVRLHGGLSLIENLLHDP 289

Query: 262 --VHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATF-----------KGADGK 308
             VHN+   + L + K +       G         SL     +              DG 
Sbjct: 290 KLVHNKLAMEGLEDMKLLFEYLTLFGITDKVSWDLSLARGLDYYTGVIYEAGLLHQQDGH 349

Query: 309 DHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWP---------DSVAPFKISLINIKAHDQ 359
                      G  R    V       + +             S+              Q
Sbjct: 350 LKESLCVGSVAGGGRYDGLVASFDPKERKVPCVGVSIGVERIFSIIEQITEEEIRTTETQ 409

Query: 360 VCRDACEK--------IYARLSKVGCDVF-WDDMGEQIGSQFAVADLLGFPLQVIVGSKF 410
           V     +K        + + L         +     ++  Q    +    PL  I+G + 
Sbjct: 410 VLVATAQKNFLNARMKLISELWDADIKAEMFYKKNPKMLKQLQYCEERRIPLVAIIGQQE 469

Query: 411 VSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
           + D  V+++  +T    ++  E+ I     R   
Sbjct: 470 LDDGVVKLRDVITRKEINVPKEKFIEEIKKRLKK 503


>gi|300867994|ref|ZP_07112633.1| Seryl-tRNA synthetase [Oscillatoria sp. PCC 6506]
 gi|300334015|emb|CBN57811.1| Seryl-tRNA synthetase [Oscillatoria sp. PCC 6506]
          Length = 424

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 68/207 (32%), Gaps = 12/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +  ++ +     G +E+  P L ++     +G+   + +E  +    +   + 
Sbjct: 173 GAALERAIIQLMLDRHTTAGYVEVIPPFLVNSASLTATGQLPKFAEESFKC---DQDDLW 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  + +++R  I +   LP         FR E     +   G++R  +F   +  
Sbjct: 230 LIPTSEVPVVNLYRDEILAAEQLPIYHCSYTPCFRREAGSYGKDTRGLIRLHQFNKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                   +     K+      +   L L    +   +G IG   +     E  + +   
Sbjct: 290 KLVHPSTSAAEH-QKLVQDAEGVLQALKLPYRVIELCTGDIGFSAAKTYDLEVWLPSAGK 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF     N  F +   
Sbjct: 349 YREISSCSNVGDFQARRANIRFKEAGK 375


>gi|224542746|ref|ZP_03683285.1| hypothetical protein CATMIT_01933 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524333|gb|EEF93438.1| hypothetical protein CATMIT_01933 [Catenibacterium mitsuokai DSM
           15897]
          Length = 50

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 395 ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
            DLLG P Q+IVG + + +  VE+K R TG R  ++  + + + ++  S+
Sbjct: 1   MDLLGLPWQLIVGRRGLGEGTVELKRRATGERLSLAPHDAVAHIANHLSS 50


>gi|93006674|ref|YP_581111.1| seryl-tRNA synthetase [Psychrobacter cryohalolentis K5]
 gi|122415030|sp|Q1Q9M6|SYS_PSYCK RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|92394352|gb|ABE75627.1| seryl-tRNA synthetase [Psychrobacter cryohalolentis K5]
          Length = 428

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 13/203 (6%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR---NDKAMIY 106
             +   +      + G  E  VP + +++    +G+   +  ++ +L +    +D     
Sbjct: 174 RALIQFMLNTHTIKYGYTETYVPYIVNSESLKGTGQLPKFEDDLFKLTNHTNNDDMDFYL 233

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYS 162
            PT E  MT++ R      + LP  F      FR E     R   G++R  +F   +   
Sbjct: 234 IPTAEVPMTNLVRGERLDIKELPLKFTAHTPCFRSEAGSHGRDTRGLIRQHQFEKVEMV- 292

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLADTGE 218
              T E S      M      I  +L L    ++  +G +          E  + +    
Sbjct: 293 NIATAEQSDELLEAMTGQAEFILQQLNLPYRTVKLCTGDMGFAAQKTYDIEVWLPSQETY 352

Query: 219 TQVFCSKDFMDFPIPSENTDFDD 241
            ++    +  DF      T   D
Sbjct: 353 REISSCSNCGDFQARRMGTRVKD 375


>gi|225865301|ref|YP_002750679.1| histidyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|225787996|gb|ACO28213.1| histidine--tRNA ligase [Bacillus cereus 03BB102]
          Length = 425

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 57/414 (13%), Positives = 123/414 (29%), Gaps = 33/414 (7%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  P L   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPMLNMYELMSYKYGGGDEILKEIYTLRDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      ES  I  + + + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILESINIPTERTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDFDDII-SLNSIVEQWTAPY---AATSD 261
            D  E          V       +      NT    +  S++   + +  P         
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLSIDDFKDAFNTPLVAEGVNEL 245

Query: 262 VHNEKLFDSLPENKRVSA-----RGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGS 316
              ++   +L  N+         RG+ +     +          +  G+ G+   +    
Sbjct: 246 QQLQQYLIALGINENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAF 305

Query: 317 YGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKV- 375
            G         +          +           +  I    ++      +I  +L    
Sbjct: 306 RGDNINYPTVGISFGLDVIYTALSQKETISSTADIFIIPIGTELQ---GLQIAQQLRSTT 362

Query: 376 GCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
              V  +  G ++      A+    P  +I+G + +S     +++   G    +
Sbjct: 363 SLKVELELTGRKLKRALNYANKENIPYVLIIGEEELSTETAMLRNMKEGSEVKV 416


>gi|294813118|ref|ZP_06771761.1| Histidyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|326441583|ref|ZP_08216317.1| histidyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|294325717|gb|EFG07360.1| Histidyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 442

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 126/426 (29%), Gaps = 60/426 (14%)

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           IRE   R G   +  P  +  ++   +G+Y   G +++    R  +    G     +  D
Sbjct: 31  IREVFGRYGFQPLQTPAFERLEVL--TGKYGDEGDKLIFKILRRGEHEATGEADLALRYD 88

Query: 117 IFRSHIK------SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
           +     +      +    P+  Y I   +R +   R G  R REF+  D      +   S
Sbjct: 89  LTVPLARTVAAYGNQLPSPYKRYAIAPVWRAD---RPGKGRFREFVQCDLDIVGSSSPLS 145

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                      L      G + +     S  +   L   + V AD G   +         
Sbjct: 146 DAEVVLALHDALDALGVPGFRFL---LNSRRVLFGLLEAYGVPADLGPGALITLDKLDKL 202

Query: 231 PIPSENTDFDDIISLNSIV-----EQWTAPYA------------------ATSDVHNEKL 267
                  +      L   V     +  TAP A                  A  D      
Sbjct: 203 APEQVVAELVTGRGLAEEVAQGLVDDLTAPDAVERIRGELKGSETGQAGLAEIDRLLRLT 262

Query: 268 FDSLPENKRVSA----RGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            D++P  +        RG++   G IF           A+     G  +   + + G   
Sbjct: 263 KDTIPAERIAFTPNLVRGLDYYTGIIFEVSAPGMPGSIAS-----GGRYDNLIATLGGKD 317

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                  +        +   D+    +I +      +++  D   ++ A + + G     
Sbjct: 318 APACGGSLGIERILPLLDHGDADGYAQIDVAVTVMGEELAADT-FRLAAEIRRAGVR--- 373

Query: 382 DDMGEQIGS--QFAV----ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              G  +G+  +F      A+  G    VI G+       V ++   +G +    L++  
Sbjct: 374 --TGVYLGASGKFRTQMKWANDQGARFCVIYGAAERDAGTVTVRDMESGEQTPFPLDQAA 431

Query: 436 NYASHR 441
              + R
Sbjct: 432 TELARR 437


>gi|254388823|ref|ZP_05004055.1| histidyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|197702542|gb|EDY48354.1| histidyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 485

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 126/426 (29%), Gaps = 60/426 (14%)

Query: 57  IREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTD 116
           IRE   R G   +  P  +  ++   +G+Y   G +++    R  +    G     +  D
Sbjct: 74  IREVFGRYGFQPLQTPAFERLEVL--TGKYGDEGDKLIFKILRRGEHEATGEADLALRYD 131

Query: 117 IFRSHIK------SYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGS 170
           +     +      +    P+  Y I   +R +   R G  R REF+  D      +   S
Sbjct: 132 LTVPLARTVAAYGNQLPSPYKRYAIAPVWRAD---RPGKGRFREFVQCDLDIVGSSSPLS 188

Query: 171 KHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDF 230
                      L      G + +     S  +   L   + V AD G   +         
Sbjct: 189 DAEVVLALHDALDALGVPGFRFL---LNSRRVLFGLLEAYGVPADLGPGALITLDKLDKL 245

Query: 231 PIPSENTDFDDIISLNSIV-----EQWTAPYA------------------ATSDVHNEKL 267
                  +      L   V     +  TAP A                  A  D      
Sbjct: 246 APEQVVAELVTGRGLAEEVAQGLVDDLTAPDAVERIRGELKGSETGQAGLAEIDRLLRLT 305

Query: 268 FDSLPENKRVSA----RGIEV--GHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGA 321
            D++P  +        RG++   G IF           A+     G  +   + + G   
Sbjct: 306 KDTIPAERIAFTPNLVRGLDYYTGIIFEVSAPGMPGSIAS-----GGRYDNLIATLGGKD 360

Query: 322 MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFW 381
                  +        +   D+    +I +      +++  D   ++ A + + G     
Sbjct: 361 APACGGSLGIERILPLLDHGDADGYAQIDVAVTVMGEELAADT-FRLAAEIRRAGVR--- 416

Query: 382 DDMGEQIGS--QFAV----ADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
              G  +G+  +F      A+  G    VI G+       V ++   +G +    L++  
Sbjct: 417 --TGVYLGASGKFRTQMKWANDQGARFCVIYGAAERDAGTVTVRDMESGEQTPFPLDQAA 474

Query: 436 NYASHR 441
              + R
Sbjct: 475 TELARR 480


>gi|167753701|ref|ZP_02425828.1| hypothetical protein ALIPUT_01982 [Alistipes putredinis DSM 17216]
 gi|167658326|gb|EDS02456.1| hypothetical protein ALIPUT_01982 [Alistipes putredinis DSM 17216]
          Length = 447

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/448 (13%), Positives = 111/448 (24%), Gaps = 56/448 (12%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-------------LWVE-- 82
           G   + PL       +   IR+     G   +  P +++               L+    
Sbjct: 10  GTRDFSPLEMMRRQYIFDKIRDVFRTFGFGPLETPAMENLSTLLGKYGDEGDKLLFKILN 69

Query: 83  SGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDE 142
           SG Y +   +                            H  S    PF  YQIQ  +R +
Sbjct: 70  SGDYAAGLNDEELRTASRICEKGLRYDLTVPFARYVVQHQ-SEIAFPFKRYQIQPVWRAD 128

Query: 143 LRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
              +    R REF   D           +    ++     R         +  R     I
Sbjct: 129 RPQKG---RYREFYQCDVDVIGTRSLLCEVELIQIVERVFRTLGINVSLKVNNRKILYGI 185

Query: 203 GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT--APYAATS 260
                 E I  AD                + +   +  +    +  +E+          +
Sbjct: 186 A-----ETIGHADKMIDITVAIDKLEKIGLEAVKAELTERGIGSDAIEKLQPILELTGDN 240

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYF----------GTKYSLPMSATF-------- 302
           +     L D +  +        E+  IF +             +SL     +        
Sbjct: 241 ERKLAVLRDVIGASAVGLEGISEMETIFGYVNRLGVELPIELDFSLARGLNYYTGAIFEV 300

Query: 303 ------KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW-----PDSVAPFKISL 351
                  G+          +   G   +    I    D    +        +       +
Sbjct: 301 KALDFAIGSICGGGRYDDLTGIFGMPNMSGVGISFGADRIYDVMTGLGLFPADLGCAARV 360

Query: 352 INIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFV 411
           +     +     A  K+   +   G          ++  Q   A+  G P  VIVGS+ +
Sbjct: 361 MFANLGEAE-EHASLKLLQEVRAAGIPAEICPENGKMKKQMEYANRRGIPCVVIVGSREL 419

Query: 412 SDSKVEIKHRLTGIREDMSLEEVINYAS 439
            +    IK   +G +  +    +     
Sbjct: 420 EERVATIKDMTSGEQTQVPFTRLAEALR 447


>gi|120603778|ref|YP_968178.1| seryl-tRNA synthetase [Desulfovibrio vulgaris DP4]
 gi|166221435|sp|A1VH35|SYS_DESVV RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|120564007|gb|ABM29751.1| seryl-tRNA synthetase [Desulfovibrio vulgaris DP4]
          Length = 424

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 74/241 (30%), Gaps = 23/241 (9%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNRT-GA 66
            PR+       L    G+  + +    G      W     +    +     +      G 
Sbjct: 135 TPREHWDIGVAL---GGLDFERAGKLAGSRFTVYWK-WAARLERALANYFLDTHISANGY 190

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +      +G+   + +++ RL           PT E  +T++    I    
Sbjct: 191 TEVLPPFMVNRKTMTGTGQLPKFEEDLFRLES---WDYFLIPTAEVPLTNLHADEILEEG 247

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP  +      FR E     +   G++R  +F   +   F       +    +M     
Sbjct: 248 DLPLGYTAQTPCFRSEAGSYGKDTRGLIRQHQFTKVEMVRFAHPERSFEEL-ERMRGHAE 306

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +   LGL    +   SG +G   +     E  +       ++    +  DF     N  
Sbjct: 307 ALLQNLGLPYRVITLCSGDMGFSATKTYDLEVWLPGQDKYREISSCSNCGDFQARRANIR 366

Query: 239 F 239
           F
Sbjct: 367 F 367


>gi|119486228|ref|ZP_01620288.1| seryl-tRNA synthetase [Lyngbya sp. PCC 8106]
 gi|119456719|gb|EAW37848.1| seryl-tRNA synthetase [Lyngbya sp. PCC 8106]
          Length = 429

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 68/193 (35%), Gaps = 12/193 (6%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + +     G +E+  P L ++     +G+   + +E  + +   +  + 
Sbjct: 174 GAALERALVQFMLDTHTSNGYVEVMPPLLVNSTSLQGTGQLPKFAEESFKCS---EDDLW 230

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  + + +R  I     LP         FR E     +   G++R  +F  K   
Sbjct: 231 LIPTSEVPVVNFYRDEILDGEQLPIYHCSFTPCFRREAGSYGKDTRGLIRLHQFH-KVEL 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
              + PE S+  + K+      I   L L    +   +G +G   +     E  + +   
Sbjct: 290 IKLVRPETSEAEHEKLVQDAEGILQALKLPYRVIELCTGDLGFSAAKCYDIEVWLPSSQS 349

Query: 218 ETQVFCSKDFMDF 230
             ++    +  DF
Sbjct: 350 YREISSCSNVKDF 362


>gi|302062686|ref|ZP_07254227.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato K40]
          Length = 58

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 19/52 (36%)

Query: 394 VADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSNN 445
              LL  P  +++G + V    V ++ R       M + +   + +   S  
Sbjct: 1   EHTLLKVPYLLVIGDREVEMQTVAVRTREGADLGSMPVAQFAEFLAQAVSRR 52


>gi|116329504|ref|YP_799224.1| seryl-tRNA synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116329819|ref|YP_799537.1| seryl-tRNA synthetase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122282406|sp|Q04WE1|SYS_LEPBJ RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|122282717|sp|Q04XA4|SYS_LEPBL RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116122248|gb|ABJ80291.1| Serine--tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116123508|gb|ABJ74779.1| Serine--tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 417

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 9/168 (5%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
           Y++   G K    +   + +   +  G  E+ VP++ + +    +G+Y  +  E  R+  
Sbjct: 165 YTYWKDGAKLERALMNFMLDVHTKEHGYTEVWVPSMVNDESMTATGQYPKFKDEFYRIE- 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                +   PT E  +T+++R  I     LP +       FR E     +   G++R  +
Sbjct: 224 --KDELNLIPTAEVPLTNLYRDEIIPEDQLPISVTAHTSCFRREAGSYGKDTRGLVRVHQ 281

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
           F   +   F    +  +    KM      I  +L L    +   SG I
Sbjct: 282 FQKVELVKFCKPEDSEEEH-KKMLSHAENILKKLKLPYRVIILCSGDI 328


>gi|71894601|ref|YP_278709.1| seryl-tRNA synthetase [Mycoplasma synoviae 53]
 gi|71851389|gb|AAZ43998.1| seryl-tRNA synthetase [Mycoplasma synoviae 53]
          Length = 421

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 85/242 (35%), Gaps = 19/242 (7%)

Query: 14  NPRDAEIASHKLMLRTGMI------HQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAI 67
             +D E   +++     MI       Q       +   G K +  +   + +   + G  
Sbjct: 131 TKKDFEKPHYEIASELNMIDIPRAVKQSGSRFVIYKNEGSKLVRALINFMLDLHKQKGYD 190

Query: 68  EMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
           E   P L  +++   +G+   + ++M ++    +  +   PT E  +T+ + + I +  +
Sbjct: 191 EFLTPYLVRSEMLFGTGQLPKFKEDMFKVE---NSDLYLIPTAEITLTNYYNNEIVN-LD 246

Query: 128 LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
            PF        FR E+    +   G++R  +F   +        +  K  +N M      
Sbjct: 247 KPFKACAYTECFRSEVGSSGKDTKGIIRQHQFKKVEIVKVTTKDDAIKE-FNLMLEDAKN 305

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           +  +L +    +   +G +G         E  + +++   +V       DF        +
Sbjct: 306 VLFKLEIPFREVLLSTGDMGFSSRKTIDLELWLPSESKYREVSSVSYMGDFQARRAKIRY 365

Query: 240 DD 241
            +
Sbjct: 366 KN 367


>gi|254786029|ref|YP_003073458.1| seryl-tRNA synthetase [Teredinibacter turnerae T7901]
 gi|259516191|sp|C5BIK4|SYS_TERTT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|237685707|gb|ACR12971.1| serine--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 426

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 10/206 (4%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   +        G  E+ VP + + D    +G+   + +++ +L  R+D+   
Sbjct: 170 ARLHRALIQFMLNTHTGEHGYDEIYVPYIVNKDSLYGTGQLPKFEEDLFKL--RDDRDFY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T++ R  I   + LP  F      FR E     R   G++R  +F   +  
Sbjct: 228 LIPTAEVPVTNMMRDEIIDEKQLPVRFACHTPCFRSEAGSYGRDTRGMIRQHQFEKVELV 287

Query: 162 SFDLTPEGSK--HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-EFIVLADTGE 218
            F    E      S      + L+       K I    ++G         E  + +    
Sbjct: 288 QFVKPGESMAALESLVGHAETILQKLSLPYRKVILCGGDTGFSSTKTYDLEVWLPSQNTY 347

Query: 219 TQVFCSKDFMDFPIPSENTDFDDIIS 244
            ++    +F DF        + +  +
Sbjct: 348 REISSCSNFGDFQARRMKARYRNAET 373


>gi|46578654|ref|YP_009462.1| seryl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough]
 gi|67461806|sp|Q72FH6|SYS_DESVH RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|46448065|gb|AAS94721.1| seryl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232527|gb|ADP85381.1| seryl-tRNA synthetase [Desulfovibrio vulgaris RCH1]
          Length = 424

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 73/241 (30%), Gaps = 23/241 (9%)

Query: 14  NPRDAEIASHKLMLRTGMIHQHS---KGI---YSWLPLGQKALDNVNAIIREEQNRT-GA 66
            PR+       L    G+  + +    G      W     +    +     +      G 
Sbjct: 135 TPREHWDIGVAL---GGLDFERAGKLAGSRFTVYWK-WAARLERALANYFLDTHISANGY 190

Query: 67  IEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYR 126
            E+  P + +      +G+   + +++ RL           PT E  +T++    I    
Sbjct: 191 TEVLPPFMVNRKTMTGTGQLPKFEEDLFRLES---WDYFLIPTAEVPLTNLHADEILEEG 247

Query: 127 NLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYL 182
           +LP  +      FR E     +   G++R  +F   +   F            +M     
Sbjct: 248 DLPLGYTAQTPCFRSEAGSYGKDTRGLIRQHQFTKVEMVRFAHPERSFDEL-ERMRGHAE 306

Query: 183 RIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTD 238
            +   LGL    +   SG +G   +     E  +       ++    +  DF     N  
Sbjct: 307 ALLQNLGLPYRVITLCSGDMGFSATKTYDLEVWLPGQDKYREISSCSNCGDFQARRANIR 366

Query: 239 F 239
           F
Sbjct: 367 F 367


>gi|86130922|ref|ZP_01049521.1| Seryl-tRNA synthetase [Dokdonia donghaensis MED134]
 gi|85818333|gb|EAQ39493.1| Seryl-tRNA synthetase [Dokdonia donghaensis MED134]
          Length = 423

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 3/117 (2%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    + A   ++    G  E  VP L +      +G+      +M  
Sbjct: 163 GAGFPVYKGKGARLQRALIAYFLDKNTAAGYTEYQVPHLVNEASGFGTGQLPDKEGQMYH 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRS 152
           +    +  +   PT E  +T++FR  ++S+  LP T       FR E       +R 
Sbjct: 223 VT---EDDLYLIPTAEVPVTNMFRGDLRSHSELPITCTGYTPCFRREAGSYGAHVRG 276


>gi|328958438|ref|YP_004375824.1| serine--tRNA ligase [Carnobacterium sp. 17-4]
 gi|328674762|gb|AEB30808.1| serine--tRNA ligase [Carnobacterium sp. 17-4]
          Length = 423

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 72/220 (32%), Gaps = 13/220 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + +    + G  E+  P L        +G++  + +++  + 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDLHTRKHGYTEVIPPYLVKESAMFGTGQFPKFKEDVFSIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
           + N   ++  PT E  +T+ + + I  Y  LP  F  +   FR E     R   G++R  
Sbjct: 223 NEN---LVLIPTAEVPLTNYYANEIIEYEKLPIYFTALSPSFRSEAGSAGRDTRGLIRMH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F                    +   L +    +   +G +G   +     E
Sbjct: 280 QFHKVEMVKFTDKESSFDELEKMTHD-AEEVLQLLEIPYKTIVLSTGDMGFSATKTYDIE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
               +     ++    + +DF        + D       V
Sbjct: 339 VWFPSQDTYREISSCSNCLDFQARRAKIRYRDSKGKIEFV 378


>gi|32267308|ref|NP_861340.1| histidyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
 gi|39932097|sp|Q7VF68|SYH_HELHP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|32263361|gb|AAP78406.1| histidyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
          Length = 442

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/435 (14%), Positives = 118/435 (27%), Gaps = 44/435 (10%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           LP    A  ++   +       G + +  P L+ AD+ ++ G  D   KE+ R  D   +
Sbjct: 16  LPKEALAKAHLLNKVSNVFMNFGFVPIETPHLEYADVLIKQG-SDEIQKELYRFKDHGGR 74

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +         +      + K+   LPF  Y I   FR E   R    R REF   D   
Sbjct: 75  DVALRFDLTVPLARFVSQY-KNEVGLPFKRYAIGNVFRGERAQRG---RYREFTQCDFDF 130

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
                                   +LG++   +      I   +     +  +       
Sbjct: 131 IGSDSISCDAEI---LQVIYASLMKLGIEEFTIWLNHRSILNGICEYCGITQEKDINVAL 187

Query: 223 CSKDFMDF--PIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL---PENKRV 277
              D +D             ++   N+ VE      +      +E  F  +    E    
Sbjct: 188 RIIDKLDKIGKERVSEELQKELGLNNNQVENLLEYTSIKQQGESESFFRQISFMEEWNDS 247

Query: 278 SARGIEVGHIFY----FGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSH 333
             +GIE   + Y                F  A G  +Y  +              + S  
Sbjct: 248 IKKGIEDLKMLYEVLSSLQMDRDTYRVNFSIARGLGYYTGIVYETTLNALKSIGSVCSGG 307

Query: 334 DGKGIIWPDSVAPFKISLINIKAH--------------------------DQVCRDACEK 367
               +    S         +I                             D++       
Sbjct: 308 RYDNLTRTFSKEKMSGVGASIGIDRLLAALEELELLQKRATSARALIVCMDRLYFGYAHL 367

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +          +       ++  QF  A L G+   V++G    +   + +K+  +G++ 
Sbjct: 368 LAESFRCSEIPIEVYPEASKLKKQFTYAHLKGYEFVVVIGENEFNTKTLTLKNMTSGVQI 427

Query: 428 D-MSLEEVINYASHR 441
           D +S  + +      
Sbjct: 428 DSISFLKALALIQEE 442


>gi|294789503|ref|ZP_06754739.1| serine--tRNA ligase [Simonsiella muelleri ATCC 29453]
 gi|294482583|gb|EFG30274.1| serine--tRNA ligase [Simonsiella muelleri ATCC 29453]
          Length = 430

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 91/292 (31%), Gaps = 28/292 (9%)

Query: 16  RDAEIASHKLMLRTGMIHQHS--KGIYSWLPLG--QKALDNVNAIIREEQN-RTGAIEMS 70
           +D       L L      + +   G    L  G   +    +   + +    + G  E  
Sbjct: 139 KDHVDLGAALGLD---FEKAAQLSGARFSLMKGKVARLHRALAQFMLDTHTTQHGYTECY 195

Query: 71  VPTLQSADLWVESGRYDSYGKEMLRLA---DRNDKAMIYGPTHEEVMTDIFRSHIKSYRN 127
            P + S    + +G+   +G+++  +    D         PT E  +T+  R  + S  +
Sbjct: 196 TPYIVSDSTLLGTGQLPKFGEDLFHVTRGGDETKLTQYLIPTAEVTLTNTVRDEVLSPHD 255

Query: 128 LPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLR 183
           LP         FR E     +   G++R  +F   +        +    +  +M      
Sbjct: 256 LPMKLTAHSPCFRSEAGSHGKDTRGLIRQHQFDKVEMVQIVQPEKSY-EALEEMVGHAEN 314

Query: 184 IFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
           I   L L    +   +G +G   +     E  V A     ++    +  DF        F
Sbjct: 315 ILKLLELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKARF 374

Query: 240 DDIISLNSIVEQWT--------APYAATSDVHNEKLFDSLPENKRVSARGIE 283
            D    N +V            A  A   +  N     ++P+  +    G+E
Sbjct: 375 KDENGKNRLVHTLNGSGLAVGRALVAVLENHQNADGSINIPKALQPYLGGVE 426


>gi|253565206|ref|ZP_04842662.1| histidyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|251946671|gb|EES87048.1| histidyl-tRNA synthetase [Bacteroides sp. 3_2_5]
          Length = 454

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 5/129 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ I   ++        I ++  
Sbjct: 329 FGMAGVSGVGISFGADRIFDVLNQLELYPKEAVNGTQLLFINFGEKEA-AFSMGILSKAR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G       D    ++  Q + A++   P   IVG   +++ K  +K+  +G ++ ++ 
Sbjct: 388 AAGIRAEIFPD--AAKMKKQMSYANVKNIPFVAIVGENEMNEGKAMLKNMESGEQQLVTA 445

Query: 432 EEVINYASH 440
           EE+I   + 
Sbjct: 446 EELIGALTK 454


>gi|167949909|ref|ZP_02536983.1| seryl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 312

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 86/257 (33%), Gaps = 21/257 (8%)

Query: 44  PLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           PL  +    +  ++ +   + G  E  VP L ++D    +G+   + +E+ +L    +  
Sbjct: 58  PL-ARMHRALIQLMLDTHIQHGYTEAYVPYLVNSDSLRGTGQLPKFEEELFKLQ--GEHE 114

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
               PT E  +T++ R  I     +P  +      FR E     +   G++R  +F   +
Sbjct: 115 YYLIPTAEVPLTNLVRDVIIDADEMPRRYVAHTPCFRSEAGSYGKDTRGMIRQHQFEKVE 174

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
                   +       ++      I  +L L    +   +G IG   +     E  +   
Sbjct: 175 LVQIVRAEDSFDAL-EQLTSHAEAILQKLELPYRVVTLCTGDIGFSATKTYDLEVWLPGQ 233

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDD----IISLNSIVEQWTAPYAATSDVHNEKLFDS- 270
               ++    +F+DF        + +       L   V         T     E   D+ 
Sbjct: 234 GKYREISSCSNFVDFQARRLQARWRNPETGKPELVHTVNGSGLAVGRTLVAVMENYQDAE 293

Query: 271 ----LPENKRVSARGIE 283
               +PE  R    GIE
Sbjct: 294 GRVRVPEALRPYMGGIE 310


>gi|60682707|ref|YP_212851.1| histidyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|81314233|sp|Q5LAE0|SYH_BACFN RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|60494141|emb|CAH08933.1| putative histidyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
          Length = 454

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 5/129 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ I   ++        I ++  
Sbjct: 329 FGMAGVSGVGISFGADRIFDVLNQLELYPKEAVNGTQLLFINFGEKEA-AFSMGILSKAR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G       D    ++  Q + A++   P   IVG   +++ K  +K+  +G ++ ++ 
Sbjct: 388 AAGIRAEIFPD--AAKMKKQMSYANVKNIPFVAIVGENEMNEGKAMLKNMESGEQQLVTA 445

Query: 432 EEVINYASH 440
           EE+I   + 
Sbjct: 446 EELIGALTK 454


>gi|53714701|ref|YP_100693.1| histidyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|81690615|sp|Q64QS2|SYH_BACFR RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|52217566|dbj|BAD50159.1| histidyl-tRNA synthetase [Bacteroides fragilis YCH46]
          Length = 454

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 5/129 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ I   ++        I ++  
Sbjct: 329 FGMAGVSGVGISFGADRIFDVLNQLELYPKEAVNGTQLLFINFGEKEA-AFSMGILSKAR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G       D    ++  Q + A++   P   IVG   +++ K  +K+  +G ++ ++ 
Sbjct: 388 AAGIRAEIFPD--AAKMKKQMSYANVKNIPFVAIVGENEMNEGKAMLKNMESGEQQLVTA 445

Query: 432 EEVINYASH 440
           EE+I   + 
Sbjct: 446 EELIGALTK 454


>gi|325105142|ref|YP_004274796.1| seryl-tRNA synthetase [Pedobacter saltans DSM 12145]
 gi|324973990|gb|ADY52974.1| seryl-tRNA synthetase [Pedobacter saltans DSM 12145]
          Length = 423

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 8/171 (4%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G K    +      E ++ G  EM +P L +      +G+      +M  
Sbjct: 163 GAGFPVYKGKGAKLQRALINFFLAEADKAGYEEMMLPHLVNEASGFGTGQLPDKEGQMYF 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           +       +   PT E  +T+++R  I     LP         FR E         G+ R
Sbjct: 223 V---GLDNLYLIPTAEVPITNLYRDVILKEDQLPVKNCGYTPCFRREAGSYGAHVRGLNR 279

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
             +F   +     + P  S     +M +    +  +LGL    +R   G +
Sbjct: 280 LHQFDKVEIV-QVVHPSQSYEVLEQMSLHVQGLLQKLGLHYRVLRLCGGDM 329


>gi|299542086|ref|ZP_07052402.1| seryl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298725401|gb|EFI66049.1| seryl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 426

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 11/207 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +      G  EM  P + + D    +G+   + +++ +L   
Sbjct: 165 FYRGLGARLERALMTFMMDLHAEEHGYEEMLPPVIVNRDSLTGTGQLPKFEEDVFKLE-- 222

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+ +R  I     LP  F      FR E     R   G++R  +F
Sbjct: 223 -ETDYFMIPTAEVPVTNFYRDEILPAEALPQGFAAYSACFRSEAGSAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSK--HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-EFIV 212
              +   F    E  +            L++      K     A+ G         E  +
Sbjct: 282 NKVELVRFVKPEESYEQLELLTSHAEKVLQLLGLPYRKLKMCTADLGFTAAKKYDLEVWI 341

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDF 239
            A     ++    +F DF     N  F
Sbjct: 342 PAQNMYREISSCSNFEDFQARRANIRF 368


>gi|228470316|ref|ZP_04055220.1| histidyl-tRNA synthetase [Porphyromonas uenonis 60-3]
 gi|228308059|gb|EEK16934.1| histidyl-tRNA synthetase [Porphyromonas uenonis 60-3]
          Length = 459

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 1/96 (1%)

Query: 348 KISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVG 407
           +  ++ +   ++  +     I  +L + G         +++  Q + A+  G    +I G
Sbjct: 362 EERIMIVNFGEEELQKL-LPIAHQLRRAGLATEVYPSADKMKKQLSYANSRGCRHVIIAG 420

Query: 408 SKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFS 443
           S+ +++ KV IK    G +++  L E+++      S
Sbjct: 421 SQELNEGKVSIKDMTLGTQQECPLNEIVSRLRESLS 456


>gi|91774260|ref|YP_566952.1| histidyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
 gi|91713275|gb|ABE53202.1| Histidyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
          Length = 377

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 64/381 (16%), Positives = 118/381 (30%), Gaps = 22/381 (5%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRL 96
           G   +LP       N+  I+R   N+    E+  PT ++ +L+  +SG  +    E+   
Sbjct: 8   GTRDFLPEETARRRNIENIMRNVVNKWDYKEVITPTFENLELFTLKSG--EGVIGELYNF 65

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+ ++ M   P     +  ++ + ++     P   +  +  FR E   +    R REF 
Sbjct: 66  NDKGNRNMALRPELTAPVMRMYVNEMQ-ATPKPLKLFYFENCFRYERPQKG---RFREFW 121

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHE----FIV 212
                        +      +  + L      G   +        I  +L  E     + 
Sbjct: 122 QFGVEVIGSNRADADAEIIALATTMLNAAGIKGDLHVGHLGIIRHILRELEPEQQSKIMR 181

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL- 271
           L D  +      + F +   P E       +   +  +  T       D+     F+ L 
Sbjct: 182 LVDKKDDSGL-EEYFEEINAPVELRRNLLELICITGTDAITKAREILGDIEEIDKFEQLL 240

Query: 272 -----PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVA 326
                 E       GI  G  +Y G      + A   GA  +                  
Sbjct: 241 TFLNAYEIDYSINLGIARGLDYYTG--MVFEIYAEGLGAQNQVCGGGSYQLISLFGGGDV 298

Query: 327 AVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGE 386
                      I+    + P K   + + + D+   D   ++   L K    V+ D M  
Sbjct: 299 PSTGFGLGFDRIMEVCEIMPEKQKSVVVISTDETRID-AIQVTTSLRKE-LTVYLDIMQR 356

Query: 387 QIGSQFAVADLLGFPLQVIVG 407
              +Q + A+ +     VIVG
Sbjct: 357 NFKTQLSHANNIEADYAVIVG 377


>gi|313157393|gb|EFR56816.1| serine--tRNA ligase [Alistipes sp. HGB5]
          Length = 423

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +   + G +E+  P + +      +G+      +M  
Sbjct: 163 GAGFPVYKGKGARLQRALINYFLDCNTKAGYLEVEPPIMVNEASGFGTGQLPDKEGQMYH 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N       PT E  +T+I+R  I    + P         FR E     +   G+ R
Sbjct: 223 ATADN---FYLIPTAEVPVTNIYRDVILDEMDFPVKMTAYTPCFRREAGSYGKDVRGLNR 279

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHE 209
             +F   +     L P+ S  + + M      I   LGL    +R   G +     L+++
Sbjct: 280 LHQFDKVEIVQLSL-PQNSYEALDGMVAHVESIVKSLGLPYRILRLCGGDMSFTSALTYD 338

Query: 210 FIVLADTGETQV 221
           F V ++  +  +
Sbjct: 339 FEVYSEAQKRWL 350


>gi|237842799|ref|XP_002370697.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
 gi|211968361|gb|EEB03557.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
          Length = 1223

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 102/354 (28%), Gaps = 72/354 (20%)

Query: 126  RNLPFTFYQIQLKFRDELRPR-FGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
            R+LP    +    FR E R    G+ R REF   D +      +  +    ++       
Sbjct: 908  RHLPLRISEFGRVFRRERRSALCGLFRLREFTQDDGHILCTREQAVEEIKVQLASILHLY 967

Query: 185  FHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
                G+    ++   G      S      AD+ + +++   +        E       + 
Sbjct: 968  VQVFGISPEGVKVSLGSRPAKASRRSDASADSEDEKLWTQAEAWLLEAAREVLPNASSVE 1027

Query: 245  LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG 304
                 E   A Y    D               V  R  + G +                 
Sbjct: 1028 TE---EGGGAFYGPKLDFSLSD----------VQGRWWQTGTLQPL-------------- 1060

Query: 305  ADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA 364
                   V +    +G++    A++    + +    P  +AP K  +  +    +  R+ 
Sbjct: 1061 -------VLIHRAAVGSLERFLALLL---ELRNGDLPVWLAPVKAVVCPVSVQSREIREY 1110

Query: 365  CEKIYARLSKV----GCD------------VFWDDMGEQIGSQFAVADLLG---FPLQVI 405
             E++   L +     G              VF D     + ++    DLLG    PL  +
Sbjct: 1111 AERVATVLRESVAPSGFSAEKEGSEDTATGVFVDLRPLHLNTKLK--DLLGRRRIPLLFL 1168

Query: 406  VGSKFVSDSKVEI---------KHRLTGIRED-MSLEEVINYASHRFSNNRPVL 449
            VG +     +V +         K      R   +SL+E            +P L
Sbjct: 1169 VGPRDEKAGRVTVLTQEWRTSSKDAAREERGRYLSLDEAARLFRDL---AKPAL 1219



 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 16  RDAEIASHKLMLR-TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           +D      ++ L               +LP G++ L N+ +++ + Q      ++  P+L
Sbjct: 701 KDHRELGREMGLFVLPPASDVGAVGPVFLPEGRQLLANLKSVLAQHQRLLQFQQVETPSL 760

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKA 103
             + LW  SG +  Y + M  ++      
Sbjct: 761 AQSGLWRRSGHWTHYRENMWTVSASPRDE 789


>gi|169825637|ref|YP_001695795.1| seryl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|238688179|sp|B1HS47|SYS_LYSSC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|168990125|gb|ACA37665.1| Seryl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
          Length = 426

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 72/208 (34%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +      G  EM  P + + +    +G+   + +++ +L   
Sbjct: 165 FYRGLGARLERALMTFMMDLHAEEHGYEEMLPPVIVNRESLTGTGQLPKFEEDVFKL--- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+ +R  I +   LP  F      FR E     R   G++R  +F
Sbjct: 222 AETDYFMIPTAEVPVTNFYRDEILTAEALPQGFAAYSACFRSEAGSAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFI 211
              +   F    E        +     ++   LGL    ++  +  +G         E  
Sbjct: 282 NKVELVRFVKPEESY-EQLELLTGHAEKVLQLLGLPYRKLKMCTADLGFTAAKKYDLEVW 340

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           + A     ++    +F DF     N  F
Sbjct: 341 IPAQNMYREISSCSNFEDFQARRANIRF 368


>gi|317120858|ref|YP_004100861.1| seryl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
 gi|315590838|gb|ADU50134.1| seryl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
          Length = 425

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 9/162 (5%)

Query: 46  GQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G + +  +   + +      G  E+  P L      V +G+   + ++  R+AD      
Sbjct: 170 GARLVRALIQFMLDLHTQEHGYTEVLPPFLVHRQSMVGTGQLPKFEEDAFRVADS---DF 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+++R  I     LP         FR E     R   G++R  +F   + 
Sbjct: 227 FLVPTAEVPVTNLYRDEILDGAQLPIYHVAYTPCFRAEAGSAGRDTRGLIRQHQFDKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
             F      ++     +      +  RLGL    +   +G +
Sbjct: 287 VKFVHPDRSAEEHEKLVAD-AEAVLQRLGLPYRLVLICTGDM 327


>gi|323450096|gb|EGB05979.1| hypothetical protein AURANDRAFT_30004 [Aureococcus anophagefferens]
          Length = 485

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 355 KAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDS 414
             +D         + + L K+G  V      ++    F  AD    PL +++     ++ 
Sbjct: 397 GDNDAALARDAAGVASTLRKLGLRVDLVLEPKKPKWAFKHADRKNAPLALMLAPDEWANG 456

Query: 415 -KVEIKHRLTGIREDMSLEEVINYASHR 441
             + +K   TG + ++ L+E+  +   R
Sbjct: 457 RALVVKDLGTGDQANVPLDELPAWLEAR 484


>gi|265765836|ref|ZP_06093877.1| histidyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|263253504|gb|EEZ24969.1| histidyl-tRNA synthetase [Bacteroides sp. 2_1_16]
          Length = 454

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 5/129 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ I   ++        I ++  
Sbjct: 329 FGMAGVSGVGISFGADRIFDVLNQLELYPKEAVNGTQLLFINFGEKEA-AFSMGILSKAR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G       D    ++  Q + A++   P   IVG   +++ K  +K+  +G ++ ++ 
Sbjct: 388 AAGIRAEIFPD--AAKMKKQMSYANVKNIPFVAIVGENEMNEGKAMLKNMESGEQQLVTA 445

Query: 432 EEVINYASH 440
           EE+I   + 
Sbjct: 446 EELIGALTK 454


>gi|294930639|ref|XP_002779630.1| histidyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239889038|gb|EER11425.1| histidyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 485

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 68/429 (15%), Positives = 125/429 (29%), Gaps = 39/429 (9%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   + P   +  + + A  R    + G  E   P L++ DL+      +   ++M   
Sbjct: 57  SGTRDFFPEDMRVRNWLFAQWRSVSTQYGFSEYDAPVLENEDLYKRK-AGEEIVEQMYNF 115

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFL 156
            D+ D  +   P     +  +  S +     LP  ++ I   +R E   R    R RE  
Sbjct: 116 VDKEDHRVTLRPEMTPTLARMVLSRV-----LPLKWFSIPQCWRFETTQRG---RKREHY 167

Query: 157 MKDAYSFDLTPEGSK----HSYNKMFVSYLRIFHRLGLKSIPMRA--ESGPIGGDLSHEF 210
             +     +    ++     +    F         +G+K              G  + EF
Sbjct: 168 QWNCDIVGVADITAELELLATMVGFFKRVGLTSADVGIKVNSRAILQSVLKASGVGADEF 227

Query: 211 IVLA------DTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAA--TSDV 262
             +       D    +    +   D  +     +     +    +E++ A        DV
Sbjct: 228 AKVCVVVDKIDKVGREEVIRQMVEDIKLDVAVAERVVDATAAGSIEEFKAIAGESCAEDV 287

Query: 263 HNEKLFDSLPEN-----KRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSY 317
            + +      EN       V    +  G  +Y G  +          A            
Sbjct: 288 DDVERLFQFAENYGIADWLVFDASVVRGLAYYTGIVWEAFDRRGELRAIAGGGRYDRLLS 347

Query: 318 GIGAMRVVAAVIESSHDGKGIIWPDSV---APFKISLINIKAHDQVCRDACEKIYARLSK 374
             GA   +  V     D                   +  + A  +       ++ A L  
Sbjct: 348 LYGAPSEIPCVGFGFGDCVIYELLLERGLLPEIPHRVDFVVAAYKGMYGQALEVAAGLRS 407

Query: 375 VG--CDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI-----RE 427
            G   DV   + G+++  QF  AD +G      V        KV IK   TG      + 
Sbjct: 408 GGATVDVML-EAGKRVDKQFRYADRVGADKIAFVAPSEWESGKVRIKDLRTGDSEARVQI 466

Query: 428 DMSLEEVIN 436
           D+ + ++ N
Sbjct: 467 DIPVCDLAN 475


>gi|223940630|ref|ZP_03632473.1| histidyl-tRNA synthetase [bacterium Ellin514]
 gi|223890711|gb|EEF57229.1| histidyl-tRNA synthetase [bacterium Ellin514]
          Length = 417

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 57/400 (14%), Positives = 120/400 (30%), Gaps = 19/400 (4%)

Query: 50  LDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADRNDKAMIYGP 108
            + +    R    R G  E   P L+S +L+  +SG  D    ++    D+  + +   P
Sbjct: 26  RNYIFDKWRSMARRYGFREYDGPPLESLELYTTKSG--DEIVAQLYNFTDKGQREVAMRP 83

Query: 109 THEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPE 168
                +  +  +H ++Y+  P  ++ +   FR E + +    R RE    +A  F  +  
Sbjct: 84  EMTPTLARMVAAHERNYKK-PIKWFALPQLFRYERQQKG---RLREHFQFNADVFGESDV 139

Query: 169 GSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFM 228
            +      + +  LR F       +   +         +      +   E      K   
Sbjct: 140 AADSELISLLIDTLRSFGLTAEDFVIRLSSRNAWHDYFNQRCTDESKAYEFYQIIDKLER 199

Query: 229 DFPIPSENTDFDDIISLNSIVEQW--TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGH 286
           + P  S  T    +      ++ +  T    A  D   + L      +       +  G 
Sbjct: 200 EQPEQS-KTKLSALGFSFEEIQSFIHTGQPTAELDAILKNLAARGLGDFVKVDYQVIRGL 258

Query: 287 IFYFGT-KYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVA 345
            +Y G    +      F+   G   Y  +     G    + A+     D   +    +  
Sbjct: 259 AYYTGVVFEAFDKKGEFRAIAGGGRYDNLVKLISGGKVNLPALGFGMGDVVLLELLKARG 318

Query: 346 PFKISLINIK----AHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
                   I       D+  R    K+   L   G  V +     +   QF  A  +   
Sbjct: 319 LLPKFESGIDLFCLIEDETLRPDSLKLIQDLRSAGFAVDYSLTPAKPDKQFKRAQEIKAA 378

Query: 402 LQVIVGSKFVSDSKVEIK--HRLTGIREDMSLEEVINYAS 439
             + V  +     ++  +  +  +   +  +  E++    
Sbjct: 379 FTIKV-ERT-PSGELMARAKNLQSREEKVSAPSEIVKNLK 416


>gi|324327245|gb|ADY22505.1| histidyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 425

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 61/432 (14%), Positives = 126/432 (29%), Gaps = 51/432 (11%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 11  DYLPEEQVLRNKIKRACEDTFERYGCKSLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 70

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 71  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 125

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      +S  I  + + + I+ 
Sbjct: 126 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILQSINIPTERTSDVILS 185

Query: 214 ADTGET--------QVFCSKDFMDFPIPSENTDF-DDIISLNSIVEQWTAPYAATSDVHN 264
            D  E          V       +      NT      +S+    E +  P  A      
Sbjct: 186 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLQLSIADFKEAFNNPLVADGVNEL 245

Query: 265 EKLFDSLPENKRVSARGIEVGHIFY--FGTKYSLPMSATF------------KGADGKDH 310
           ++L   L       A GI    IF        ++     +             G+ G+  
Sbjct: 246 QQLQQYL------IALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYD 299

Query: 311 YVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYA 370
            +     G         +          +           +  I    ++      +   
Sbjct: 300 NIIGAFRGDNMNYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGTELQCLQLAQQLR 359

Query: 371 RLSKVGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIR 426
             + +  ++         G +   A    +    P  +I+G + +S     +++   G  
Sbjct: 360 STTSLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTETAMLRNMKEGSE 413

Query: 427 EDMSLEEVINYA 438
             + L  + +Y 
Sbjct: 414 VKVPLSSLSSYL 425


>gi|257417514|ref|ZP_05594508.1| seryl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|257159342|gb|EEU89302.1| seryl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
          Length = 423

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 75/214 (35%), Gaps = 13/214 (6%)

Query: 45  LGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKA 103
           LG      V   + ++  N  G  E+  P L ++     +G++  + +++ ++    +  
Sbjct: 169 LGACLERAVYNFMLDQHVNEHGYTEVIPPYLVNSKAMFGTGQFPKFKEDVFQV---AESD 225

Query: 104 MIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKD 159
           +   PT E  +T+ + + I   + LP  F  +   FR E     R   G++R  +F   +
Sbjct: 226 LTLIPTAEVPLTNYYNNEILEAQELPIYFTALSPSFRSEAGSAGRDTRGLIRLHQFHKVE 285

Query: 160 AYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLAD 215
              F       +        +   I  +LGL    +   +G +G   +     E  + A 
Sbjct: 286 MVKFSDAEHSYEELEKMT-NNAGDILEKLGLPYRVITLSTGDMGFSAAKTYDLEVWIPAQ 344

Query: 216 TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
               ++    +  DF        + D        
Sbjct: 345 KTYREISSCSNCEDFQARRALIRYRDKTGHVQYA 378


>gi|269302447|gb|ACZ32547.1| histidyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN]
          Length = 430

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/415 (13%), Positives = 125/415 (30%), Gaps = 30/415 (7%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW----VESGRYDSYGKEMLRLADRNDK 102
                +V   I       G  E+  P  + ++++     ES   D   KE+    DR  +
Sbjct: 26  TSLWHSVEKAIHTVCMLYGFCEIRTPIFEKSEVFLHVGEES---DVVKKEVYSFLDRKGR 82

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
           +M   P     +   F  H  S+R+    FY I   FR E +      +  +F ++    
Sbjct: 83  SMTLRPEGTAAVVRSFLEHGASHRS-DNKFYYILPMFRYERQQAGRYRQHHQFGVEAIGV 141

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVLADTG 217
               P         ++  Y     R+GL+ + ++             D      +    G
Sbjct: 142 RH--PLRDAEVLALLWDFYS----RVGLQHMQIQLNFLGGSETRFRYDKVLRAYLKESMG 195

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------ 271
           E      + F    +   ++   +   +           +     +  ++ D+L      
Sbjct: 196 ELSALSQQRFSTNVLRILDSKEPEDQEIIRQAPPILDYVSDEDLKYFNEILDALRVLEIP 255

Query: 272 --PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                + V         +F   T +      ++    G  +   + ++G  ++      +
Sbjct: 256 YAINPRLVRGLDYYSDLVFEATTTFQE---VSYALGGGGRYDGLISAFGGASLPACGFGV 312

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                 + ++    + P     + +   +      C +    L ++G     D   +++ 
Sbjct: 313 GLERVIQTLLAQKRIEPQFPHKLRLIPMEPDADQFCLEWSQHLRRLGIPTEVDWSHKKVK 372

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
                A         ++G + +   ++ IK+         + EEV     +   N
Sbjct: 373 GALKAASTEQVSFVCLIGERELISQQLVIKNMSLRKEFFGTKEEVEQRLLYEIQN 427


>gi|302037512|ref|YP_003797834.1| seryl-tRNA synthetase [Candidatus Nitrospira defluvii]
 gi|300605576|emb|CBK41909.1| Seryl-tRNA synthetase [Candidatus Nitrospira defluvii]
          Length = 428

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 72/218 (33%), Gaps = 13/218 (5%)

Query: 46  GQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +    R G  E+  P L +      +G+   +  ++ +L D     +
Sbjct: 169 GARLERALINYMLDMHTTRHGYREVLPPLLVNRTAMTGTGQLPKFEDDLFQLRDE---EL 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++ R  I +  +LP  +      FR E     +   G++R  +F   + 
Sbjct: 226 FLIPTAEVPVTNLHREEIMAEESLPIRYTAYTPCFRREAGSYGKDTRGLIRLHQFNKVEL 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
            +F    +       ++      I   LGL    +    G +G   +     E  + +  
Sbjct: 286 VAFARPEQSYDEL-ERLTSHAEAILQGLGLHYRVITLCKGDMGFSAAKTYDIEVWLPSQQ 344

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTA 254
              ++    +F  F     N              ++  
Sbjct: 345 TFREISSCSNFEAFQARRANIRCRAKAGKKDNKPEFVH 382


>gi|282901474|ref|ZP_06309399.1| tRNA synthetase, class II (G, H, P and S) [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193753|gb|EFA68725.1| tRNA synthetase, class II (G, H, P and S) [Cylindrospermopsis
           raciborskii CS-505]
          Length = 426

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 71/207 (34%), Gaps = 12/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   +  +    G IE+S P L + D    +G+   + +E  +     +  + 
Sbjct: 175 GAALERALIQFMLSKHIENGYIEISPPLLVNTDSLTGTGQLPKFAQESFKC---AEDELW 231

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMRSREFLMKDAY 161
             PT E  +T+++R  I +  +LP         FR E         G++R  +F   +  
Sbjct: 232 LIPTAEVPVTNLYRGEILNKEDLPIYHTAYTPCFRREAGSYGRDMRGLIRLHQFNKVELV 291

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                    +    K+  S   I   L L    +   +G +G   +     E  + +   
Sbjct: 292 KIVSPESSFEEL-EKLVGSAESILQSLKLPYRVIELCTGDLGFGATKTYDLEVWLPSFNK 350

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    + +DF     +  F +   
Sbjct: 351 YREISSCSNCIDFQARRADIRFKEAGK 377


>gi|71066173|ref|YP_264900.1| seryl-tRNA synthetase [Psychrobacter arcticus 273-4]
 gi|123648178|sp|Q4FR92|SYS_PSYA2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|71039158|gb|AAZ19466.1| seryl-tRNA synthetase [Psychrobacter arcticus 273-4]
          Length = 427

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 13/203 (6%)

Query: 51  DNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL---ADRNDKAMIY 106
             +   +      + G  E  VP + +++    +G+   +  ++ +L    + +D     
Sbjct: 174 RALIQFMLNTHTIKYGYTETYVPYIVNSESLKGTGQLPKFEGDLFKLINHTNNDDMDFYL 233

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYS 162
            PT E  MT++ R      + LP  F      FR E     R   G++R  +F   +   
Sbjct: 234 IPTAEVPMTNLVRGERLDIKELPLKFTAHTPCFRSEAGSHGRDTRGLIRQHQFEKVEMV- 292

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLADTGE 218
              T E S      M      I  +L L    ++  +G +          E  + +    
Sbjct: 293 NIATAEQSDELLEAMTGQAEFILQQLNLPYRTVKLCTGDMGFAAQKTYDIEVWLPSQDTY 352

Query: 219 TQVFCSKDFMDFPIPSENTDFDD 241
            ++    +  DF      T   D
Sbjct: 353 REISSCSNCGDFQARRMGTRVKD 375


>gi|304382010|ref|ZP_07364563.1| serine--tRNA ligase [Prevotella marshii DSM 16973]
 gi|304336808|gb|EFM03031.1| serine--tRNA ligase [Prevotella marshii DSM 16973]
          Length = 429

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 62/185 (33%), Gaps = 10/185 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   +E  ++G +E+  P + + D    +G+      +M  
Sbjct: 164 GAGFPVYIGKMARLQRALEAFFLDEARKSGYLEVQPPFVVNRDSGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T++FR  I    +LP         FR E     +   G+ R
Sbjct: 224 CET---DDLYLIPTAEVPVTNMFRDVILDESDLPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHE 209
             +F   +    D     +             +  +L L    +    G +     + ++
Sbjct: 281 LHQFDKVELVRIDRPEHSANSLREM-LDHVESLCRKLELPYRILLLCGGDMSFTSHICYD 339

Query: 210 FIVLA 214
           F V +
Sbjct: 340 FEVFS 344


>gi|294496119|ref|YP_003542612.1| seryl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
 gi|292667118|gb|ADE36967.1| seryl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
          Length = 502

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 87/330 (26%), Gaps = 28/330 (8%)

Query: 26  MLRTGMIHQHSK-GIYSWLPLGQKALDNVNAIIREEQNR-TGAIEMSVPTLQSADLWVES 83
           ML  G I + +  G +   P   K       I+ EE     G  EM  P L   D+W +S
Sbjct: 189 MLEKGWIKRGASRGQWIHGPQSTKLFRTFEKIVLEELLEPLGYQEMIFPKLVPWDVWKKS 248

Query: 84  GRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL 143
           G       E                      T       +   +   T        ++++
Sbjct: 249 GHAKGVYPE--------------IYYVCPPKTRDPEYWEEVADHYKVTKEVPTELIKEKI 294

Query: 144 RPRFGVMRSRE---FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESG 200
               G +   +   F M        T       +++   S+      +            
Sbjct: 295 GDPIGGLCYAQCPPFWMYLQGETIPTESFPLKVFDRSGTSHRYESGGIHGMERVDEFHRI 354

Query: 201 PIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
            I    + E +V A     + +         +          ++   + ++  A  +   
Sbjct: 355 EIVWLGTKEQVVKASEELHERYMHIFNEILDLEWRKAW----VTPWFMAQEGLAGVSDEQ 410

Query: 261 DVHNEKLFDSLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIG 320
                     LP  +      +E  ++   G KY  P     K   G+   +  G  G+G
Sbjct: 411 SAGTTDYEAPLP-YRGEDGEWLEFQNVSVNGNKY--PSGFNVKNQSGE--ELWSGCSGVG 465

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKIS 350
             R  +A +            +    F   
Sbjct: 466 LERWTSAFLAQKGLDPENWPEEFRKRFGEM 495


>gi|269216691|ref|ZP_06160545.1| serine--tRNA ligase [Slackia exigua ATCC 700122]
 gi|269129925|gb|EEZ61008.1| serine--tRNA ligase [Slackia exigua ATCC 700122]
          Length = 426

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 13/217 (5%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG +    +   + +     G  E   P + +A     +G+   +  ++ +  +     M
Sbjct: 170 LGARLERALINFMIDTHISRGYKEWWPPAMANATTLFGTGQLPKFEDDLFKTREG----M 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+I    +    +LP  +      FR+E     R   G++R  +F   + 
Sbjct: 226 YLIPTAEVQLTNIHAQEVLDASDLPLKYCAFTPCFREEAGSAGRDTRGLIRVHQFDKVEM 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
             F    +G              I   LGL    +   +G +G   +     E  + +  
Sbjct: 286 VKFATPEDGFNQLELMTAD-AENILKLLGLPHRVISLCTGDLGFSAAKTYDLEVWLPSYD 344

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWT 253
           G  ++       DF     +  + D  S       +T
Sbjct: 345 GYKEISSCSCCTDFQARRADIKYRDAASFKGTRYAYT 381


>gi|21231048|ref|NP_636965.1| seryl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768947|ref|YP_243709.1| seryl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188992061|ref|YP_001904071.1| seryl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|30173176|sp|Q8PA92|SYS_XANCP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|81305089|sp|Q4UTD4|SYS_XANC8 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|229470725|sp|B0RUV8|SYS_XANCB RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|21112675|gb|AAM40889.1| seryl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574279|gb|AAY49689.1| seryl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733821|emb|CAP52027.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 426

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 67/207 (32%), Gaps = 11/207 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP L +AD    +G+   +  ++    +  D    
Sbjct: 171 ARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFEDDLF-QTEVGDSKRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 230 LIPTSEVPLTNIVRDAIVDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           +     +               +  +LGL    +   +G +G         E  + +   
Sbjct: 290 TACSPEDSEAEHQRMTR-CAEVVLEKLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQAT 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF        + +  S
Sbjct: 349 YREISSCSNCGDFQARRMQARWRNPAS 375


>gi|183222806|ref|YP_001840802.1| seryl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189912838|ref|YP_001964393.1| seryl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|238687768|sp|B0S8Z4|SYS_LEPBA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|238687846|sp|B0SRZ1|SYS_LEPBP RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|167777514|gb|ABZ95815.1| Serine--tRNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167781228|gb|ABZ99526.1| Seryl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 418

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 71/191 (37%), Gaps = 11/191 (5%)

Query: 21  ASHKLMLRTGM--IHQHSKGIYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSA 77
              KL +      +       Y++  LG K   ++  ++ +      G  EM VP L + 
Sbjct: 144 IGEKLGIFDFERGVKLSGARFYTYRGLGAKLERSLMNLMLDTHTSENGYEEMWVPVLVND 203

Query: 78  DLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQL 137
           +    +G+   + ++  RL       +   PT E  +T+ +R  I   + LP +      
Sbjct: 204 ESMTATGQLPKFAEDFYRLEKDG---LNLIPTAEVPLTNYYRDEIIQEKELPISVCAHTS 260

Query: 138 KFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSI 193
            FR E     R   G++R  +F  K      + PE S  ++ KM      I  +L L   
Sbjct: 261 CFRREAGSYGRDTRGLVRVHQF-QKVELVKFVEPEKSGEAHEKMLQDAESILQKLKLPYR 319

Query: 194 PMRAESGPIGG 204
            M   S  +  
Sbjct: 320 VMLLCSKDMSS 330


>gi|332637146|ref|ZP_08416009.1| seryl-tRNA synthetase [Weissella cibaria KACC 11862]
          Length = 427

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 65/169 (38%), Gaps = 7/169 (4%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    V   + +E  + G  EM  P +        +G+Y  + ++  R+    ++ M 
Sbjct: 170 GARLERAVYNFMLDEHQKEGYKEMITPYMVKDAAMFGTGQYPKFMEDAYRV--GTNEDMT 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+ FR  +     LP++   +   FR E     R   G++R  +F   +  
Sbjct: 228 LIPTAEVPLTNYFREEVIDADKLPYSVTAVSPSFRQEAGSAGRDTRGLIRMHQFNKVEMV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEF 210
            F    +  +     M  +   I  +L L    +   +G +G   +  +
Sbjct: 288 KFTKPEQSYQAL-EDMTANAENILQKLNLPYHVITLSTGDMGFSAAKTY 335


>gi|325336815|gb|ADZ13089.1| threonyl-tRNA synthetase [Riemerella anatipestifer RA-GD]
          Length = 50

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 397 LLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHR 441
           +   P  +IVG     +  V ++ R  G   +MS+E  + Y  + 
Sbjct: 1   MKKIPFMLIVGENEAGNQTVSVRKRGEGDLGEMSIESFVEYFKNE 45


>gi|83588895|ref|YP_428904.1| seryl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
 gi|123525300|sp|Q2RMH8|SYS_MOOTA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|83571809|gb|ABC18361.1| seryl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
          Length = 427

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 79/245 (32%), Gaps = 19/245 (7%)

Query: 8   LPILQENPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQN- 62
           LP  +  PR     +  L +    R G +         +   G +    +   + +    
Sbjct: 129 LPRFKFEPRPHWEIAENLGIVDFERGGKV--AGARFVFYRGAGARLERALINFMLDLHTI 186

Query: 63  RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHI 122
           + G  E+  P + ++   + +G+   + ++M  +           PT E  +T+++R  I
Sbjct: 187 KHGYTEIFPPYMVNSASMLGTGQLPKFAEDMFHVE---GTDYYLIPTAEVPVTNLYRGEI 243

Query: 123 KSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
                LP         FR E         G++R  +F   +   F    +  +       
Sbjct: 244 LPGEKLPIYHVAYSACFRAEAGAAGRDTRGLIRQHQFNKVELVKFTRPEDSYEELEKLTR 303

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTGETQVFCSKDFMDFPIPS 234
                +   LGL    +   +G +G   +     E  +       ++    +F DF    
Sbjct: 304 D-AEEVLQLLGLPYRVVALCAGDLGFSAAKTYDLEVWMPGTACYREISSCSNFEDFQARR 362

Query: 235 ENTDF 239
            +  F
Sbjct: 363 ADIRF 367


>gi|118431143|ref|NP_147398.2| histidyl-tRNA synthetase [Aeropyrum pernix K1]
 gi|150421678|sp|Q9YEB2|SYH_AERPE RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|116062467|dbj|BAA79634.2| histidyl-tRNA synthetase [Aeropyrum pernix K1]
          Length = 435

 Score = 61.3 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 65/435 (14%), Positives = 120/435 (27%), Gaps = 42/435 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVE-SGRY--DSYGKEML 94
           G   + P        + + +       G   +  P +   + W   SG+Y  ++  + + 
Sbjct: 11  GFRDFPPEVMILRKRLLSRLERVFESYGFDPLDTPAV---EYWETLSGKYGEEAESRLIW 67

Query: 95  RLADRN-DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSR 153
           R  D    +           +     S       +PF  Y I   +R E   +    R R
Sbjct: 68  RFQDPWSGRWYALRYDLTVPLARFVAS--NPGLPMPFKRYHIGKVWRHEEPQKG---RYR 122

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVL 213
           EF+  DA         +      +    +     LGL    +R     +   +  E +  
Sbjct: 123 EFVQCDADIVGSPYPEADAEIVSL---AVDSIDALGLPGFRVRVNDRRLLAGVFEEELGF 179

Query: 214 ADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ------WTAPYAATSDVH---- 263
            D                +     + + +    S VE+      W        +      
Sbjct: 180 -DNPLPIYRAIDKLDKIGVEGVRRELERLGLPGSTVERIMEIISWRGRPGEVLESVRRGY 238

Query: 264 --NEKLFDSLPENK----RVSARGIEVGHIFYFGTKYSLPMSATF-KGADGKDHY----V 312
             NEK+ ++L   +        + +E+      G  Y                       
Sbjct: 239 GSNEKVREALDHLEEMLSLADDKRVELDMSLVRGLDYYTGPILEVVLDEPRIGSVAGGGR 298

Query: 313 QMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRD-----ACEK 367
             G  G+ A R + A   S    + I     +  + + +  +     V  D        +
Sbjct: 299 YDGLVGMFAGRDIPATGVSIGIERIIDAGLELGVYSLDVKTVAQVAVVVLDRRYYRYAWE 358

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
               L + G +V  D        Q   A  LG P+   VG+K      + +     G R 
Sbjct: 359 AARILRRGGLNVRIDLSRASGQVQRRKASRLGIPVLAFVGAKEAEGGFLTLYSAAKGERV 418

Query: 428 DMSLEEVINYASHRF 442
            + L E +       
Sbjct: 419 AVPLGEAVKAVERLL 433


>gi|254293766|ref|YP_003059789.1| seryl-tRNA synthetase [Hirschia baltica ATCC 49814]
 gi|254042297|gb|ACT59092.1| seryl-tRNA synthetase [Hirschia baltica ATCC 49814]
          Length = 437

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 77/238 (32%), Gaps = 19/238 (7%)

Query: 28  RTGMIHQHS---KG--IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWV 81
              M  + +    G    +      K    +   + + Q +  G  E+S P L   D  V
Sbjct: 156 FALMDFEAAAKISGARFVALRGKMAKLERALTQFMLDVQTDEHGYQEVSPPFLVRDDALV 215

Query: 82  ESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRD 141
            +G+   + +++ +  +         PT E  +T++ R  I +   LP         FR 
Sbjct: 216 GTGQLPKFEEDLFKTTN----DFYTIPTAEVPVTNLVREQILAEDQLPIRMTAATPCFRS 271

Query: 142 EL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA 197
           E     R   G++R  +F   +  S     E       +M      I  +L L    +  
Sbjct: 272 EAGSAGRDTKGMIRLHQFTKVEMVSITKPEESDAEL-ERMTGCAEAILQKLELPYRVVNL 330

Query: 198 ESGPI----GGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQ 251
            +G I          E  + +     ++       DF     NT F    + ++   +
Sbjct: 331 CTGDIGFGAKRTYDIEVWLPSQDTYREISSCSTCGDFQARRMNTRFKPAPTEDNKKPK 388


>gi|227550622|ref|ZP_03980671.1| serine--tRNA ligase [Enterococcus faecium TX1330]
 gi|227180246|gb|EEI61218.1| serine--tRNA ligase [Enterococcus faecium TX1330]
          Length = 422

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 73/220 (33%), Gaps = 13/220 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + ++     G  EM  P + ++     +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDQHIYEHGYTEMITPYIVNSKAMFGTGQFPKFKEDVFQLE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              +  +   PT E  +T+ +   I    +LP  F  +   FR E     R   G++R  
Sbjct: 223 ---NTDLTLIPTAEVPLTNYYNDEILDGADLPVYFTALSPAFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F       +            I  +L L    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFSDAEHSYEELEKMTAD-AEDILKKLHLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             + A     ++    +  DF        + D        
Sbjct: 339 VWIPAQDTYREISSCSNCEDFQARRAMIRYRDNDGKIHYA 378


>gi|163791200|ref|ZP_02185617.1| seryl-tRNA synthetase [Carnobacterium sp. AT7]
 gi|159873531|gb|EDP67618.1| seryl-tRNA synthetase [Carnobacterium sp. AT7]
          Length = 427

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 73/219 (33%), Gaps = 13/219 (5%)

Query: 35  HSKGIYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEM 93
                  +  LG +    V   + +      G  EM  P L ++D    +G++  + +++
Sbjct: 159 SGSRFVYYKGLGARLERAVYNFMLDLHTEEHGYTEMMTPYLVNSDSMFGTGQFPKFKEDV 218

Query: 94  LRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGV 149
            ++       +   PT E  +T+ +R+ I     LP  F  +   FR E     R   G+
Sbjct: 219 FQIE---GTDLTLIPTAEVPLTNYYRNEILKEEQLPVYFTALSPSFRSEAGSAGRDTRGL 275

Query: 150 MRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH- 208
           +R  +F   +   F                +   +  +L L    +   +G +G   +  
Sbjct: 276 IRLHQFNKVEMVKFSKPETSYDELEKMT-NNAEAVLQKLNLPYRVLALCTGDMGFSAAKT 334

Query: 209 ---EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIIS 244
              E  + A     ++    +   F        + +  +
Sbjct: 335 YDLEVWIPAQETYREISSCSNTEAFQARRAKIRYRNEET 373


>gi|298372889|ref|ZP_06982879.1| serine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275793|gb|EFI17344.1| serine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 424

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 10/185 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +E    G +E+  P + + D    +G+      +M  
Sbjct: 164 GAGFPVYKGKGARLQRALINFFLDEARNAGYLEIEPPYVVNTDSGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
           +       +   PT E  +T+IFR  I + ++LP         FR E     +   G+ R
Sbjct: 224 VT---VDDLYLIPTAEVPVTNIFRDVILAEKDLPCKLTAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHE 209
             +F   +    D            +      +  +L L    +R   G +     L+ +
Sbjct: 281 LHQFNKVEIVRIDKPEHSYDSLDEMVR-YVENLICKLELPYRILRLCGGDMSFTSSLTFD 339

Query: 210 FIVLA 214
           F V +
Sbjct: 340 FEVFS 344


>gi|126642757|ref|YP_001085741.1| seryl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
 gi|126388641|gb|ABO13139.1| seryl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
          Length = 278

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 69/205 (33%), Gaps = 13/205 (6%)

Query: 44  PLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           PL  +    +   + +    + G  E  VP L +AD    +G+   + +++ +L    +K
Sbjct: 23  PL-ARLQRALTQFMLDTHTLKNGYTEAYVPYLVNADSLRGTGQLPKFEEDLFKLQ--GEK 79

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMK 158
                PT E  +T+  R  I     LP  +      FR E     R   G++R  +F   
Sbjct: 80  EYYLIPTAEVPVTNFVRDEIIDADRLPLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKV 139

Query: 159 DAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLA 214
           +           +    ++      I   LGL    +    G +G   +     E  V +
Sbjct: 140 EMVQIVKPETSMQAL-EELTAHAEGILQALGLPYRKILLCGGDMGFGATKTYDLEVWVPS 198

Query: 215 DTGETQVFCSKDFMDFPIPSENTDF 239
                ++    +  DF        +
Sbjct: 199 QNTYREISSCSNMGDFQARRMKARY 223


>gi|15836195|ref|NP_300719.1| histidyl-tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|8979035|dbj|BAA98870.1| histidyl tRNA synthetase [Chlamydophila pneumoniae J138]
          Length = 430

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 54/415 (13%), Positives = 126/415 (30%), Gaps = 30/415 (7%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLW----VESGRYDSYGKEMLRLADRNDK 102
                +V   I       G  E+  P  + ++++     ES   D   KE+  + DR  +
Sbjct: 26  TSLWHSVEKAIHTVCMLYGFCEIRTPIFEKSEVFLHVGEES---DVVKKEVYSVLDRKGR 82

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
           +M   P     +   F  H  S+R+    FY I   FR E +      +  +F ++    
Sbjct: 83  SMTLRPERTAAVVSAFLEHGASHRS-DIKFYYILPMFRYERQQAGRYRQHHQFGVEAIGV 141

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVLADTG 217
               P         ++  Y     R+GL+ + ++             D      +    G
Sbjct: 142 RH--PLRDAEVLALLWDFYS----RVGLQHMQIQLNFLGGSETRFRYDKVLRAYLKESMG 195

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL------ 271
           E      + F    +   ++   +   +           +     +  ++ D+L      
Sbjct: 196 ELSALSQQRFSTNVLRILDSKEPEDQEIIRQAPPILDYVSDEDLKYFNEILDALRVLEIP 255

Query: 272 --PENKRVSARGIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAAVI 329
                + V         +F   T +      ++    G  +   + ++G  ++      +
Sbjct: 256 YAINPRLVRGLDYYSDLVFEATTTFQE---VSYALGGGGRYDGLISAFGGASLPACGFGV 312

Query: 330 ESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIG 389
                 + ++    + P     + +   +      C +    L ++G     D   +++ 
Sbjct: 313 GLERAIQTLLAQKRIEPQFPHKLRLIPMEPDADQFCLEWSQHLRRLGIPTEVDWSHKKVK 372

Query: 390 SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASHRFSN 444
                A         ++G + +   ++ IK+         + EEV     +   N
Sbjct: 373 GALKAASTEQVSFVCLIGERELISQQLVIKNMSLRKEFFGTKEEVEQRLLYEIQN 427


>gi|301164185|emb|CBW23743.1| putative histidyl-tRNA synthetase [Bacteroides fragilis 638R]
          Length = 454

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 5/129 (3%)

Query: 314 MGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLS 373
            G  G+  + +             +      A     L+ I   ++        I ++  
Sbjct: 329 FGMAGVSGVGISFGADRIFDVLNQLELYPKEAVNGTQLLFINFGEKEA-AFSMGILSKAR 387

Query: 374 KVGCDVFW--DDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSL 431
             G       D    ++  Q + A++   P   IVG   +++ K  +K+   G ++ ++ 
Sbjct: 388 AAGIRAEIFPD--AAKMKKQMSYANVKNIPFVAIVGENEMNEGKAMLKNMENGEQQLVTA 445

Query: 432 EEVINYASH 440
           EE+I   + 
Sbjct: 446 EELIGALTK 454


>gi|228470329|ref|ZP_04055233.1| seryl-tRNA synthetase [Porphyromonas uenonis 60-3]
 gi|228308072|gb|EEK16947.1| seryl-tRNA synthetase [Porphyromonas uenonis 60-3]
          Length = 424

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 60/192 (31%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +     G +E+  P + +    + +G+      +M  
Sbjct: 164 GAGFPVYRGKGARLQRALINFFLDRATAAGFMEVEPPIMVNEASGIGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+IFR  I     LP         FR E     +   G+ R
Sbjct: 224 AQLDN---LYLIPTAEVPVTNIFRDVILEADQLPICCTAYTPCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHE 209
             +F   +  S D      +            +   L L    +R           ++++
Sbjct: 281 LHQFDKVEIVSIDRPDHSWQQLDKM-IAHVKSLVEELELPYRILRLCGGDLSFTSAMTYD 339

Query: 210 FIVLADTGETQV 221
           F V +   E  +
Sbjct: 340 FEVFSAAQERWL 351


>gi|221485669|gb|EEE23950.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii GT1]
          Length = 1151

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 16  RDAEIASHKLMLR-TGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTL 74
           +D      ++ L               +LP G++ L N+ +++ + Q      ++  P+L
Sbjct: 697 KDHRELGREMGLFVLPPASDVGAVGPVFLPEGRQLLANLKSVLAQHQRLLQFQQVETPSL 756

Query: 75  QSADLWVESGRYDSYGKEMLRLADRNDKA 103
             + LW  SG +  Y + M  ++      
Sbjct: 757 AQSGLWRRSGHWTHYRENMWTVSASPRDE 785


>gi|126652931|ref|ZP_01725073.1| seryl-tRNA synthetase [Bacillus sp. B14905]
 gi|126590261|gb|EAZ84383.1| seryl-tRNA synthetase [Bacillus sp. B14905]
          Length = 426

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 13/208 (6%)

Query: 41  SWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            +  LG +    +   + +      G  EM  P + + D    +G+   + +++ +L   
Sbjct: 165 FYRGLGARLERALMTFMMDLHAEEHGYEEMLPPVIVNRDSLTGTGQLPKFEEDVFKLE-- 222

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
            +      PT E  +T+ +R  I +   LP  F      FR E     R   G++R  +F
Sbjct: 223 -ETDYFMIPTAEVPVTNFYRDEILTAEALPQGFAAYSACFRSEAGSAGRDTRGLIRQHQF 281

Query: 156 LMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIG----GDLSHEFI 211
              +   F    E        +     ++   LGL    ++  +  +G         E  
Sbjct: 282 NKVELVRFVKPEESY-EQLELLTGHAEKVLQLLGLPYRKLKMCTADLGFTAAKKYDLEVW 340

Query: 212 VLADTGETQVFCSKDFMDFPIPSENTDF 239
           + A     ++    +F DF     N  F
Sbjct: 341 IPAQNMYREISSCSNFEDFQARRANIRF 368


>gi|121536069|ref|ZP_01667851.1| seryl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
 gi|121305351|gb|EAX46311.1| seryl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
          Length = 297

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 15/198 (7%)

Query: 14  NPRDAEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNR-TGAIE 68
            PR       +L +    R G +         +   G +    +   + +   R  G  E
Sbjct: 9   EPRPHWEIGERLGILDFERGGKV--TGARFTFYKGAGARLERALINFMLDLHTREHGYTE 66

Query: 69  MSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128
              P + +AD  V +G+   + ++M +L           PT E  +T++ R  I   ++L
Sbjct: 67  FFPPFIVNADSMVGTGQLPKFAQDMFKLE---GLDYYLIPTAEVPVTNLHRQEILDAKDL 123

Query: 129 PFTFYQIQLKFRDELRP----RFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRI 184
           P  +      FR E         G++R  +F   +   F L  E       K+  +  R+
Sbjct: 124 PLYYAAYSACFRAEAGAAGRDTRGLIRQHQFNKVELVKFTLPEESYNEL-EKLTNNAERV 182

Query: 185 FHRLGLKSIPMRAESGPI 202
              LGL    +   +G +
Sbjct: 183 LQLLGLPYRVVLLCTGDM 200


>gi|257888112|ref|ZP_05667765.1| seryl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257824166|gb|EEV51098.1| seryl-tRNA synthetase [Enterococcus faecium 1,141,733]
          Length = 423

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 73/220 (33%), Gaps = 13/220 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + ++     G  EM  P + ++     +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDQHIYEHGYTEMITPYIVNSKAMFGTGQFPKFKEDVFQLE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              +  +   PT E  +T+ +   I    +LP  F  +   FR E     R   G++R  
Sbjct: 223 ---NTDLTLIPTAEVPLTNYYNDEILDGADLPVYFTALSPAFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F       +            I  +L L    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFSDAEHSYEELEKMTAD-AEDILKKLHLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             + A     ++    +  DF        + D        
Sbjct: 339 VWIPAQDTYREISSCSNCEDFQARRAMIRYRDNDGKIHYA 378


>gi|193217033|ref|YP_002000275.1| seryl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
 gi|238692483|sp|B3PNG9|SYS_MYCA5 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|193002356|gb|ACF07571.1| seryl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
          Length = 424

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 67/211 (31%), Gaps = 13/211 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G K +  +   + +     G  E+    L ++ +   +G+   +  ++ R++D
Sbjct: 164 FVLYKNAGAKLIRALANFMLDTHINNGYKEIMPAHLVNSKMLFGTGQLPKFKDDLFRVSD 223

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
                +   PT E  +T+     I +  N P  +      FR E     R   G++R  E
Sbjct: 224 S---DLWLIPTAEVPLTNYHYDEILN-LNEPIKYVAYTKCFRSEAGSGGRDTRGIIRQHE 279

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +        +        +      I   L L    +   +G +G   +     E 
Sbjct: 280 FHKVELVKIVRQEDAMGEWEKMVND-AKNILTLLELPYREILLCTGDMGFSSAKTIDLEI 338

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDD 241
            + ++    +        DF        + D
Sbjct: 339 WIPSEQRYRETSSISICKDFQARRAKIRYKD 369


>gi|257896269|ref|ZP_05675922.1| seryl-tRNA synthetase [Enterococcus faecium Com12]
 gi|293379350|ref|ZP_06625494.1| serine--tRNA ligase [Enterococcus faecium PC4.1]
 gi|257832834|gb|EEV59255.1| seryl-tRNA synthetase [Enterococcus faecium Com12]
 gi|292641873|gb|EFF60039.1| serine--tRNA ligase [Enterococcus faecium PC4.1]
          Length = 423

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 73/220 (33%), Gaps = 13/220 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + ++     G  EM  P + ++     +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDQHIYEHGYTEMITPYIVNSKAMFGTGQFPKFKEDVFQLE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              +  +   PT E  +T+ +   I    +LP  F  +   FR E     R   G++R  
Sbjct: 223 ---NTDLTLIPTAEVPLTNYYNDEILDGADLPVYFTALSPAFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F       +            I  +L L    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFSDAEHSYEELEKMTAD-AEDILKKLHLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             + A     ++    +  DF        + D        
Sbjct: 339 VWIPAQDTYREISSCSNCEDFQARRAMIRYRDNDGKIHYA 378


>gi|294619786|ref|ZP_06699182.1| seryl-tRNA synthetase [Enterococcus faecium E1679]
 gi|291593970|gb|EFF25448.1| seryl-tRNA synthetase [Enterococcus faecium E1679]
          Length = 422

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 73/220 (33%), Gaps = 13/220 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + ++     G  EM  P + ++     +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDQHIYEHGYTEMITPYIVNSKAMFGTGQFPKFKEDVFQLE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              +  +   PT E  +T+ +   I    +LP  F  +   FR E     R   G++R  
Sbjct: 223 ---NTDLTLIPTAEVPLTNYYNDEILDGADLPIYFTALSPAFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F       +            I  +L L    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFSDAEHSYEELEKMTAD-AEDILKKLHLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             + A     ++    +  DF        + D        
Sbjct: 339 VWIPAQDTYREISSCSNCEDFQARRAMIRYRDNDGKIHYA 378


>gi|21242403|ref|NP_641985.1| seryl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306]
 gi|30173178|sp|Q8PLY2|SYS_XANAC RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|21107843|gb|AAM36521.1| seryl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 426

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 66/204 (32%), Gaps = 11/204 (5%)

Query: 47  QKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +      G  E +VP L +AD    +G+   +  ++    +  +    
Sbjct: 171 ARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFEDDLF-QTEVGESRRY 229

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I R  I     LP       + FR E     R   G++R  +F   +  
Sbjct: 230 LIPTSEVPLTNIVREEIVDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELV 289

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
           +     +               +  +LGL    +   +G +G         E  + +   
Sbjct: 290 TACAPEDSDAEHQRMTR-CAEVVLEQLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQNT 348

Query: 218 ETQVFCSKDFMDFPIPSENTDFDD 241
             ++    +  DF        + +
Sbjct: 349 YREISSCSNCGDFQARRMQARWRN 372


>gi|254428921|ref|ZP_05042628.1| seryl-tRNA synthetase [Alcanivorax sp. DG881]
 gi|196195090|gb|EDX90049.1| seryl-tRNA synthetase [Alcanivorax sp. DG881]
          Length = 429

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 91/305 (29%), Gaps = 40/305 (13%)

Query: 9   PILQENPRDAEIASHKLMLRTGMIHQHSK------------GIYSWLPLGQKALDNVNAI 56
             L   PRD       L    G+  + +             G+        +    +   
Sbjct: 134 KTLPFEPRDHVDVGEALD--GGLDFERAAKLSGARFSVMSGGL-------ARMHRALIDF 184

Query: 57  IREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMT 115
           + +   +  G  E+ VP L   +    +G+   + +++ ++    ++ +   PT E  +T
Sbjct: 185 MLDMHSDEHGYQEVYVPFLVGPEALRGTGQLPKFAEDLFKME--GERELYLIPTAEVPVT 242

Query: 116 DIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSK 171
           ++    I     +P  +      FR E     +   G++R  +F   +        E   
Sbjct: 243 NLAADEILEADTMPRRYTCHTPCFRSEAGSHGKDTRGMIRQHQFEKVELVQMVRAEESDA 302

Query: 172 --HSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH-EFIVLADTGETQVFCSKDFM 228
              +      + L+         I    + G         E  + +     ++    +F 
Sbjct: 303 ALEALTGHAEAVLQKLDLPYRVVILCGGDLGFSSSKTYDIEVWLPSQQRYREISSCSNFQ 362

Query: 229 DFPIPSENTDFDD----IISLNSIVEQWTAPYAAT-----SDVHNEKLFDSLPENKRVSA 279
           D+        + +       L   +         T      +  NE    ++PE  R   
Sbjct: 363 DYQSRRMQARWRNPETGKPELVHTLNGSALAVGRTLVAILENYQNEDGSVTVPEALRSYM 422

Query: 280 RGIEV 284
           RG+E 
Sbjct: 423 RGLER 427


>gi|228922043|ref|ZP_04085354.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837651|gb|EEM82981.1| Histidyl-tRNA synthetase 1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 428

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 66/421 (15%), Positives = 126/421 (29%), Gaps = 47/421 (11%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWV-ESGRYDSYGKEMLRLADR 99
            +LP  Q   + +     +   R G   +  PTL   +L   + G  D   KE+  L D+
Sbjct: 14  DYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQ 73

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKD 159
             + +            +    +     LPF  Y+I   FRD    +    R REF+  D
Sbjct: 74  GKRDLALRYDLTIPFAKVVA--MNPNIRLPFKRYEIGKVFRDGPIKQG---RFREFIQCD 128

Query: 160 AYSFDLTPEGSK-HSYNKMFVSYLRIFHRLGLKSIPMRA-----ESGPIGGDLSHEFIVL 213
                +    ++    +  F  +  +   + ++    +      E   I  +L+ + I+ 
Sbjct: 129 VDIVGVESVMAEAELMSMAFELFRTLNLEVTIQYNNRKLLNGILEFINIPTELTSDVILS 188

Query: 214 ADTGETQVF--CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSL 271
            D  E        KD ++  I  E  D      L+ +              +N+ + D +
Sbjct: 189 LDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLKLSIADF---KEAFNNQLVADGV 245

Query: 272 PENKRVSAR----GIEVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA 327
            E +++        I    IF       L M                 S G G  R    
Sbjct: 246 NELQQLQQYLIALRINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGG-RYDNI 304

Query: 328 VIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDA------------CEKIYARLS-- 373
           +     D              +    +   +     A            C +I  +L   
Sbjct: 305 IGAFRGDNMNYPTVGISFGLDVIYTALSQKETTPSTADLFIIPLGTELLCLQIAQQLRTT 364

Query: 374 -KVGCDVFWDDMGEQIGSQFAVA----DLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED 428
             +  ++         G +   A    +    P  +I+G + +S   V +++   G    
Sbjct: 365 TSLKIELEL------AGRKLKRALNYANKENIPYVLIIGEEELSTETVMLRNMKEGSEVK 418

Query: 429 M 429
           +
Sbjct: 419 V 419


>gi|226309605|ref|YP_002769499.1| seryl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|254783010|sp|C0ZH54|SYS_BREBN RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|226092553|dbj|BAH40995.1| seryl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 426

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 13/210 (6%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   N  G  E+  P + +      +G+   + ++  ++ 
Sbjct: 163 FVFYKGLGARLERALMNFMMDLHSNEHGYEEVIPPFIVNRTSMTGTGQLPKFEEDAFKIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                     PT E  +T++ R  I    +LP  +      FR E     R   G++R  
Sbjct: 223 ---GPDYFLIPTAEVPVTNMHRDEIMDGADLPRYYTAFSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHE 209
           +F   +   F    E      +K+  +  ++   LGL    +   +G +          E
Sbjct: 280 QFNKVELVKFVKPEESYDEL-DKLVKNAEKVLQLLGLPYRVLSMCTGDLGFTAAKKFDIE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDF 239
             + +     ++    +F DF     N  F
Sbjct: 339 VWIPSGDTYREISSCSNFEDFQARRANIRF 368


>gi|260780861|ref|XP_002585554.1| hypothetical protein BRAFLDRAFT_274629 [Branchiostoma floridae]
 gi|229270558|gb|EEN41565.1| hypothetical protein BRAFLDRAFT_274629 [Branchiostoma floridae]
          Length = 515

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 61/487 (12%), Positives = 131/487 (26%), Gaps = 57/487 (11%)

Query: 11  LQENPRDAEIAS---HKLM--------LRTGMIH-QHSKGIYSWLPLGQKALDNVNAIIR 58
           L++   D E  S    KL+         R      +  KG   + P      + V   I 
Sbjct: 28  LKQEKADPEKISEEVQKLLSLKEQLGDARPQKFQLKTPKGTRDYNPRQMAIREGVFKTII 87

Query: 59  EEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIF 118
               R GA  +  P  +  +    +G+Y    K +  LAD+  + +              
Sbjct: 88  NCFKRHGAETIDTPVFELKETL--TGKYGEDAKLIYDLADQGGEILSLRYDLTVPFARYL 145

Query: 119 RSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMF 178
             +  +           +       R R+      +F +   Y   +          ++ 
Sbjct: 146 AMNKINTIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQYDLMIPDAECVKIVAEIL 205

Query: 179 VSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTD 238
                    + L +  +      + G    +F  +    +       + +   +  E   
Sbjct: 206 SELNVGDFIIKLNTRLLLDGMFAVCGVPEDKFRTICSAVDKLDKTFWEDVRSEMVDEKGL 265

Query: 239 FDDIIS-------LNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFG 291
             ++         LN  +E           + N+     L E K +       G +    
Sbjct: 266 APEVADRIGEYVRLNGQLELVDQLMQDEQMMKNKMARQGLEEMKLLLTYCQLFGVLDKVS 325

Query: 292 TKYSLPMSATFKGADGKDHYVQMGSYGIG------AMRVVAAVIESSHDGKGIIWPDSVA 345
              SL     +      +  +               + V +      +DG   ++     
Sbjct: 326 FDLSLARGLDYYTGVIYEAILTTEKVQSDGGDKNEPVGVGSVAGGGRYDGLVGMFDPKGK 385

Query: 346 PFKISLINIKAHD-----QVCRDACE------------------------KIYARLSKVG 376
                 ++I         +   +A E                        K+   L + G
Sbjct: 386 KVPCVGVSIGIERLFSIMEAKAEAAEGKVRTTETQVYVASGQKNMLEERMKLCNLLWEGG 445

Query: 377 CDVFWDDMGE-QIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVI 435
                      ++ +QF  A+  G P   I+G + + D  V++++  T   E    ++++
Sbjct: 446 IKTELSYKKNPKLLNQFQYAEEHGIPFLAIIGEQELKDGVVKVRNTSTREEETFPRDKLL 505

Query: 436 NYASHRF 442
                R 
Sbjct: 506 EEIRTRV 512


>gi|293572385|ref|ZP_06683367.1| seryl-tRNA synthetase [Enterococcus faecium E980]
 gi|291607545|gb|EFF36885.1| seryl-tRNA synthetase [Enterococcus faecium E980]
          Length = 423

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 73/220 (33%), Gaps = 13/220 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + ++     G  EM  P + ++     +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDQHIYEHGYTEMITPYIVNSKAMFGTGQFPKFKEDVFQLE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              +  +   PT E  +T+ +   I    +LP  F  +   FR E     R   G++R  
Sbjct: 223 ---NTDLTLIPTAEVPLTNYYNDEILDGADLPVYFTALSPAFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F       +            I  +L L    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFSDAEHSYEELEKMTAD-AEDILKKLHLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             + A     ++    +  DF        + D        
Sbjct: 339 VWIPAQDTYREISSCSNCEDFQARRAMIRYRDNDGKIHYA 378


>gi|156549684|ref|XP_001605112.1| PREDICTED: similar to LOC445827 protein [Nasonia vitripennis]
          Length = 502

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 69/499 (13%), Positives = 135/499 (27%), Gaps = 94/499 (18%)

Query: 4   SKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWLPLGQK------------ALD 51
           SK     L+    D  + S KL+L+T              P G +            A+D
Sbjct: 33  SKLLE--LKAQLGDENVGSQKLLLKT--------------PKGTRDYNPEQMALRLSAMD 76

Query: 52  NVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHE 111
            + AI R    + GA  +  P  +  ++   +G+Y    K +  L D+  + +       
Sbjct: 77  KIVAIFR----KHGAETIDTPIFELKEVL--TGKYGEDSKLIYDLKDQGGEILALRYDLT 130

Query: 112 EVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDL------ 165
                       +   +         K      P     R REF   D            
Sbjct: 131 VPFA-----RYLAMNKITNIKRYHIAKVYRRDNPAMTKGRYREFYQCDFDIAGQYDPMLP 185

Query: 166 -----------------TPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
                             P   K ++  +             K   + +    +      
Sbjct: 186 DSECLRIIYEALKSLNLGPFTIKVNHRCLLDGIFATCGVPQEKFRSICSAVDKLDKSPWE 245

Query: 209 EFIVLAD--------TGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATS 260
           E                +             +  E     D++   S VE   +      
Sbjct: 246 EVKKEMVEEKGLDEKIADRIGTYVSKSGGRDLVEELRKDADLLKQPSAVEGINSMELLLK 305

Query: 261 DVHNEKLFDSLPENKRVSARGIEV--GHIFYFGTKY------SLPMSATFKGADGKDHYV 312
                K+ D+L  +    ARG++   G IF            S+     +    G     
Sbjct: 306 YCEIFKIMDNLVFD-LSLARGLDYYTGVIFEAVLTGDNIGVGSVAGGGRYDNLVGMFDPK 364

Query: 313 QMGSYGIGA---MRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
                 +G    +  + +V+E+S   +G+    +     ++      H++        I 
Sbjct: 365 NKNVPCVGMSLGIERIFSVLETSIANRGMKTRTTEVQVFVATAQKNLHEERML-----IL 419

Query: 370 ARLSKVGCDVF--WDDMGEQIG--SQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGI 425
           A L +        +    +     +Q    +  G PL +IVG   +   +V +++  T  
Sbjct: 420 AELWEANIKAEQSY---KKSPKLLAQLQHCEEYGIPLAIIVGEGELKRGEVTLRNVKTRE 476

Query: 426 REDMSLEEVINYASHRFSN 444
              +    ++     +   
Sbjct: 477 EASIPRANLVEELKKKLDT 495


>gi|257899256|ref|ZP_05678909.1| seryl-tRNA synthetase [Enterococcus faecium Com15]
 gi|257837168|gb|EEV62242.1| seryl-tRNA synthetase [Enterococcus faecium Com15]
          Length = 423

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 73/220 (33%), Gaps = 13/220 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + ++     G  EM  P + ++     +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDQHIYEHGYTEMITPYIVNSKAMFGTGQFPKFKEDVFQLE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              +  +   PT E  +T+ +   I    +LP  F  +   FR E     R   G++R  
Sbjct: 223 ---NTDLTLIPTAEVPLTNYYNDEILDGADLPVYFTALSPAFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F       +            I  +L L    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFSDAEHSYEELEKMTAD-AEDILKKLHLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             + A     ++    +  DF        + D        
Sbjct: 339 VWIPAQDTYREISSCSNCEDFQARRAMIRYRDNDGKIHYA 378


>gi|242310423|ref|ZP_04809578.1| histidyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
 gi|239522821|gb|EEQ62687.1| histidyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
          Length = 439

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 115/429 (26%), Gaps = 40/429 (9%)

Query: 43  LPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDK 102
           LP    A   +   I     + G   +  P L+ A++  + G  D   KEM    D  ++
Sbjct: 19  LPKEAYAKSQMLKSIINSFEKFGFSPIETPHLEYAEILKKQG-SDEIQKEMYHFFDHGNR 77

Query: 103 AMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYS 162
            +         +      +      LPF  Y I   FR E   +    R REF   D   
Sbjct: 78  EVALRFDLTLPLARFISQYKND-LGLPFKRYCIGNVFRGERAQKG---RYREFTQCDFDF 133

Query: 163 FDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTGETQVF 222
                 GS            +    LGLK+  +   +  I   L       + T E    
Sbjct: 134 IGTESLGSDIEI---LQVIYQTLSDLGLKNFTIHINNRKIFNGLCQSLNAESYTAEILRI 190

Query: 223 CSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPENKRVSARGI 282
             K              D        ++      +   +  + +   SL   K ++   +
Sbjct: 191 IDKIDKIGKDSVTKELQDKTPLQKEQIQVLLDFISLKQEGDSLQFLSSLNHYKNINP-TL 249

Query: 283 EVGH--IFYFGTKYSLPMSATF----------KGADGKDHYVQMGSYGIGAMRVVAAVIE 330
           + G   +       S  +   F           G      Y  + +       V +    
Sbjct: 250 KEGLEELESLCEILSKLIPQNFYTINLSIARGLGYYTGIIYETILNDLPNLGSVCSGGRY 309

Query: 331 SSHDGKGIIWPDSVAPFKISLINIKAHDQVCR------------------DACEKIYARL 372
            +          S     I L  + A  +                              L
Sbjct: 310 DNLTQNFSNDKMSGVGASIGLDRLLAGLEELNLITQNTPAEAILIPLNNLQYAYTFAQNL 369

Query: 373 SKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRED-MSL 431
             +G  +       +    F  A+  G+   +I G    S +   +K   +G ++D +SL
Sbjct: 370 RNLGMKIEVYPEITKPQKAFKYANNKGYKWVIITGENEESTNTASLKDMQSGEQKDQLSL 429

Query: 432 EEVINYASH 440
           + +      
Sbjct: 430 QTLSQIILD 438


>gi|149182704|ref|ZP_01861171.1| seryl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148849614|gb|EDL63797.1| seryl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 426

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 8/139 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIRE-EQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    +   + +   +  G  EM  P + + +    +G+   + ++   + 
Sbjct: 163 FVFYKGLGARLERALINFMMDLHMDEHGYEEMLPPYMVNRESMTGTGQLPKFEEDAFLIE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
                     PT E  +T+  R  I +   LP  +      FR E     R   G++R  
Sbjct: 223 SE---DYFLVPTAEVPVTNYHRDEILTNDQLPIAYTAFSACFRSEAGSAGRDTRGLIRQH 279

Query: 154 EFLMKDAYSFDLTPEGSKH 172
           +F   +   F    E    
Sbjct: 280 QFNKVELVRFVRPEESYDE 298


>gi|313886826|ref|ZP_07820531.1| serine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|332299470|ref|YP_004441391.1| seryl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
 gi|312923716|gb|EFR34520.1| serine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|332176533|gb|AEE12223.1| seryl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
          Length = 424

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 59/192 (30%), Gaps = 10/192 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   +   G +    +     +     G  E+  P + +    + +G+      +M  
Sbjct: 164 GAGFPVYKGRGARLQRALINFFLDRATAAGFQEVEPPIMVNEASGIGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+IFR  I     LP         FR E     +   G+ R
Sbjct: 224 AQLDN---LYLIPTAEVPVTNIFRDVILEADQLPVCCTAYTPCFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAE--SGPIGGDLSHE 209
             +F   +  S D      +            +   L L    +R           ++++
Sbjct: 281 LHQFDKVEIVSIDRPDHSWQQLDKM-IAHVKSLVEELELPYRILRLCGGDLSFTSAMTYD 339

Query: 210 FIVLADTGETQV 221
           F V +   E  +
Sbjct: 340 FEVFSAAQERWL 351


>gi|257885573|ref|ZP_05665226.1| seryl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|261206902|ref|ZP_05921591.1| seryl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289567404|ref|ZP_06447770.1| seryl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|293557178|ref|ZP_06675729.1| seryl-tRNA synthetase [Enterococcus faecium E1039]
 gi|294614525|ref|ZP_06694437.1| seryl-tRNA synthetase [Enterococcus faecium E1636]
 gi|257821429|gb|EEV48559.1| seryl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|260078530|gb|EEW66232.1| seryl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289160800|gb|EFD08734.1| seryl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|291592618|gb|EFF24215.1| seryl-tRNA synthetase [Enterococcus faecium E1636]
 gi|291600659|gb|EFF30960.1| seryl-tRNA synthetase [Enterococcus faecium E1039]
          Length = 423

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 73/220 (33%), Gaps = 13/220 (5%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQN-RTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
              +  LG +    V   + ++     G  EM  P + ++     +G++  + +++ +L 
Sbjct: 163 FVYYKGLGARLERAVYNFMLDQHIYEHGYTEMITPYIVNSKAMFGTGQFPKFKEDVFQLE 222

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSR 153
              +  +   PT E  +T+ +   I    +LP  F  +   FR E     R   G++R  
Sbjct: 223 ---NTDLTLIPTAEVPLTNYYNDEILDGADLPIYFTALSPAFRSEAGSAGRDTRGLIRLH 279

Query: 154 EFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----E 209
           +F   +   F       +            I  +L L    M   +G +G   +     E
Sbjct: 280 QFNKVEMVKFSDAEHSYEELEKMTAD-AEDILKKLHLPYRVMALSTGDMGFSAAKTYDLE 338

Query: 210 FIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             + A     ++    +  DF        + D        
Sbjct: 339 VWIPAQDTYREISSCSNCEDFQARRAMIRYRDNDGKIHYA 378


>gi|319956131|ref|YP_004167394.1| seryl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
 gi|319418535|gb|ADV45645.1| seryl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
          Length = 414

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 72/209 (34%), Gaps = 12/209 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G +    +     +     G  E +VP + ++++   +G+   + +++ ++ D     + 
Sbjct: 170 GARLQTALINFFLDRNIAAGFEEYAVPFMVNSEMLRGTGQLPKFEEDLFKVCDE---DLY 226

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I+   I     LP         FR E     R   G++R  +F   +  
Sbjct: 227 LIPTAEVPLTNIYHDEILPAEELPVLMTAYSPCFRKEAGSAGRDTRGMIRQHQFAKVEMV 286

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                PE S   + KM      +   LGL    +   +G +G   +     E  +     
Sbjct: 287 -AITRPEESDEIFQKMVQQASDLLTELGLPHRWVELCTGDLGFSAARTVDLEVWLPGQGK 345

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLN 246
             ++    +  DF        F D     
Sbjct: 346 YREISSISNTRDFQARRAKIRFKDGKKNW 374


>gi|119582425|gb|EAW62021.1| histidyl-tRNA synthetase, isoform CRA_a [Homo sapiens]
 gi|193784950|dbj|BAG54103.1| unnamed protein product [Homo sapiens]
          Length = 440

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 54/439 (12%), Positives = 119/439 (27%), Gaps = 51/439 (11%)

Query: 47  QKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIY 106
               + V  +I     R GA  +  P  +  +  +  G+Y    K +  L D+  + +  
Sbjct: 1   MAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLM--GKYGEDSKLIYDLKDQGGELLSL 58

Query: 107 GPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSF-DL 165
                            +   L         K      P     R REF   D     + 
Sbjct: 59  RYDLTVPFA-----RYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNF 113

Query: 166 TPEGSKHSYNKMFVSYL---RIFHRLGLKSIPMRAE-SGPIGGDLSHEFIVLADTGETQV 221
            P        K+    L   +I   L   +     +    I G    +F  +  + +   
Sbjct: 114 DPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLD 173

Query: 222 FCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDV-------HNEKLFDSLPEN 274
             S + +   +  E     ++        Q     +    +        N++  + L + 
Sbjct: 174 KVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDL 233

Query: 275 KRVSAR----GIEVGHIFYFGTKYSLPMSATFKGAD---------------------GKD 309
           K +       GI+    F       L                               G  
Sbjct: 234 KLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGR 293

Query: 310 HYVQMGSYGIGAMRVVAAVIESSHDGKGIIW------PDSVAPFKISLINIKAHDQVCRD 363
           +   +G +     +V    +    +    I        +       + + + +  +   +
Sbjct: 294 YDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLE 353

Query: 364 ACEKIYARLSKVGCDV-FWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRL 422
              K+ + L   G           ++ +Q    +  G PL  I+G + + D  ++++   
Sbjct: 354 ERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVT 413

Query: 423 TGIREDMSLEEVINYASHR 441
           +    D+  E+++     R
Sbjct: 414 SREEVDVRREDLVEEIKRR 432


>gi|239629757|ref|ZP_04672788.1| seryl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239527369|gb|EEQ66370.1| seryl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 427

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 70/219 (31%), Gaps = 10/219 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G +    V     +E  + G  E+  P L + D    +G++  +      +  
Sbjct: 163 FVYYKGAGARLERAVYNFFLDEHQKEGYEEIIPPYLVNNDSMFGTGQFPKFTDATYTIT- 221

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            + + +   PT E  + + +R+ I     LP  F  +   FR E     R   G++R  +
Sbjct: 222 NDGEPLTLIPTAEVPLVNYYRNDIIDAEKLPVNFTALTPAFRSEAGSAGRDTRGLIRMHQ 281

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F    +  K     +      +  +LGL    +   S       +     E 
Sbjct: 282 FNKVEMVKFCKPEDSWKQL-QNLIHDAEDLLQKLGLPYHVITLASNDASFTSAKTNDLEV 340

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            + A     ++    +  DF        + D       V
Sbjct: 341 WMPAQDRYREISSCSNCTDFQARRAQIRYRDDDGKLQFV 379


>gi|116495303|ref|YP_807037.1| seryl-tRNA synthetase [Lactobacillus casei ATCC 334]
 gi|227534260|ref|ZP_03964309.1| seryl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|122263281|sp|Q037M7|SYS_LACC3 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|116105453|gb|ABJ70595.1| seryl-tRNA synthetase [Lactobacillus casei ATCC 334]
 gi|227188114|gb|EEI68181.1| seryl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 427

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 70/219 (31%), Gaps = 10/219 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G +    V     +E  + G  E+  P L + D    +G++  +      +  
Sbjct: 163 FVYYKGAGARLERAVYNFFLDEHQKEGYEEIIPPYLVNNDSMFGTGQFPKFTDATYTIT- 221

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            + + +   PT E  + + +R+ I     LP  F  +   FR E     R   G++R  +
Sbjct: 222 NDGEPLTLIPTAEVPLVNYYRNDIIDAEKLPVNFTALTPAFRSEAGSAGRDTRGLIRMHQ 281

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F    +  K     +      +  +LGL    +   S       +     E 
Sbjct: 282 FNKVEMVKFCKPEDSWKQL-QNLIHDAEDLLQKLGLPYHVITLASNDASFTSAKTNDLEV 340

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            + A     ++    +  DF        + D       V
Sbjct: 341 WMPAQDRYREISSCSNCTDFQARRAQIRYRDDDGKLQFV 379


>gi|75907945|ref|YP_322241.1| seryl-tRNA synthetase [Anabaena variabilis ATCC 29413]
 gi|123609900|sp|Q3MCE0|SYS_ANAVT RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|75701670|gb|ABA21346.1| seryl-tRNA synthetase [Anabaena variabilis ATCC 29413]
          Length = 426

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 12/207 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   + + Q   G +E+S P L + D    +G+   + +E  + AD     + 
Sbjct: 175 GAALERALINFMLKTQTVAGYVEVSPPLLVNTDSLTGTGQLPKFAEESFKCAD---DELW 231

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMRSREFLMKDAY 161
             PT E  +T+++R  I +  NLP         FR E         G++R  +F   +  
Sbjct: 232 LIPTAEVPVTNLYRGEILAAENLPIYHCAYTPCFRREAGSYGRDMRGLIRLHQFNKVELV 291

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                         K+  +   I   L L    +   +G +G   +     E  + +   
Sbjct: 292 KVVHPSTSFDEL-EKLVGNAEAILQALKLPYRVINLCTGDLGFGATKTYDLEVWLPSSGK 350

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF     +  F +   
Sbjct: 351 YREISSCSNCFDFQARRADIRFKEAGK 377


>gi|301066873|ref|YP_003788896.1| seryl-tRNA synthetase [Lactobacillus casei str. Zhang]
 gi|300439280|gb|ADK19046.1| Seryl-tRNA synthetase [Lactobacillus casei str. Zhang]
          Length = 427

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 70/219 (31%), Gaps = 10/219 (4%)

Query: 39  IYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLAD 98
              +   G +    V     +E  + G  E+  P L + D    +G++  +      +  
Sbjct: 163 FVYYKGAGARLERAVYNFFLDEHQKEGYEEIIPPYLVNNDSMFGTGQFPKFTDATYTIT- 221

Query: 99  RNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSRE 154
            + + +   PT E  + + +R+ I     LP  F  +   FR E     R   G++R  +
Sbjct: 222 NDGEPLTLIPTAEVPLVNYYRNDIIDAEKLPVNFTALTPAFRSEAGSAGRDTRGLIRMHQ 281

Query: 155 FLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
           F   +   F    +  K     +      +  +LGL    +   S       +     E 
Sbjct: 282 FNKVEMVKFCKPEDSWKQL-QNLIHDAEDLLQKLGLPYHVITLASNDASFTSAKTNDLEV 340

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            + A     ++    +  DF        + D       V
Sbjct: 341 WMPAQDRYREISSCSNCTDFQARRAQIRYRDDDGKLQFV 379


>gi|269103370|ref|ZP_06156067.1| histidyl-tRNA synthetase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163268|gb|EEZ41764.1| histidyl-tRNA synthetase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 419

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 53/424 (12%), Positives = 121/424 (28%), Gaps = 29/424 (6%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVES--GRYDSYGKEMLR 95
           G+   LP        V  ++R+     G  E+ +P L+  +L+  +     D   KEM  
Sbjct: 8   GMKDILPTETPIWQWVEKVLRKATKNYGYKEIRLPILEPIELFQRAVGEATDIVSKEMYD 67

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREF 155
             D++++ +   P            +   Y N     +     FR E   +  + +  +F
Sbjct: 68  FIDKSNEHITLRPEGTSGCVRSVIENNLCYNN-TQRLWYQGPMFRYERPQKGRLRQFNQF 126

Query: 156 LMKDAYSFDLTPEGSKHSYNKMF-------VSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208
            ++     +   +      +                 + LG     +      I     H
Sbjct: 127 GVETFGMSNADIDSELIYLSNEIFSALGLTKHINLEINSLGTIEERLEHRKALINYFKKH 186

Query: 209 EFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISL--NSIVEQWTAPYAATSDVHNEK 266
           + ++  D+           +D   P   T  ++   L      E         S++    
Sbjct: 187 QDLLDEDSLIRLEKNPLRILDSKNPQMQTMLENAPKLLDYLTEESLDHFKTVCSNLDQVD 246

Query: 267 LFD----SLPENKRVSARGIEVGHIFYFGTKYSLPMSATFKG--ADGKDHYVQMGSYGIG 320
           +       L        R +        G++ ++     + G  A      +    + IG
Sbjct: 247 IKYTINPRLVRGLDYYTRTVFEWTTDQLGSQSTVCGGGRYDGLVALFSGQSLPASGFAIG 306

Query: 321 AMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF 380
             R++   +             S          +  +  +     + +     +   +V+
Sbjct: 307 IERLI---LLLEAVNITPPHDSSKKIIFTCEDKLDTNKALI--LAKNLRDTFPQ--LEVY 359

Query: 381 WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYASH 440
            D  G ++  Q   A      + V +    V D  + I       +  ++ EE +++   
Sbjct: 360 SDFSGSKLKKQHQRALKESADIVVTL---NV-DHTLGIWSISDNDKLVINKEEFLDHIQI 415

Query: 441 RFSN 444
               
Sbjct: 416 FIKE 419


>gi|89890859|ref|ZP_01202368.1| histidyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
 gi|89517004|gb|EAS19662.1| histidyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
          Length = 473

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 60/454 (13%), Positives = 128/454 (28%), Gaps = 63/454 (13%)

Query: 44  PLGQK------ALDN--VNAIIREEQNRTGAIEMSVPTLQSADLW-----VESGRY-DSY 89
           P G +            +   I+      G + +  P+ +++D        E  R     
Sbjct: 25  PKGTRDFSPVEVQRRQYIMNTIKHHFEHYGFMPIETPSFENSDTLLGKYGEEGDRLIFKI 84

Query: 90  GKEMLRLADRNDKAMIYGPTHEEV-----------MTDIFRSHIKSYRNLPFTFYQIQLK 138
                 L    D+ +     H+             +T  F  ++  ++N     ++    
Sbjct: 85  LNNGQYLKKVKDEDLHSKNEHKVSPQISKRALRYDLTVPFARYVVQHQNDIAFPFKRYQI 144

Query: 139 FRDELRPRFGVMRSREFLMKDAYSFDLTPEGSK----HSYNKMFVSYLRIFHRLGLKSIP 194
                  R    R +EF   DA          +      Y+ +F         + + +  
Sbjct: 145 QPVWRADRPQHGRFQEFYQCDADVVGSNSLLQEVELVKLYDAVFTDLKLDGCTIKINNRK 204

Query: 195 MRAESGPIGG--DLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQW 252
           + A    + G  D   +F V  D  + ++   K   +  +   +    + ++    ++  
Sbjct: 205 ILAGIAQMIGAEDQLIDFTVALDKLD-KIGADKVKEEMVLKGISETAIEKLNPVFSLQGE 263

Query: 253 TAPYAATSDVHNEKLFDSLPENKRVSARGIEVGHIFYFGTK-------YSLPMSATF--- 302
              +A+  DV    L DS    K +         +   G K        +L     +   
Sbjct: 264 ---FASKLDVMQSLLSDSEIGQKGIEELEFINKQVVQLGLKSAVLDLDITLARGLNYYTG 320

Query: 303 ------------KGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIW-----PDSVA 345
                        G+ G        +   G   V    I    D   ++           
Sbjct: 321 CIFEVAAPEGVKMGSIGGGGRYDDLTSMFGLKDVSGVGISFGLDRIYLVIEELGLFPDSV 380

Query: 346 PFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVI 405
              + ++ I   ++        +  R    G          +   Q   AD    P  ++
Sbjct: 381 RAGVDVLFINFGEKEA-AYAMDLVFRFRDNGIKTELYPEAAKTNKQMKYADRNEIPYVIL 439

Query: 406 VGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
           +G   ++   + +K+  TG +E +  +EVI    
Sbjct: 440 LGEDEIAAESLLLKNMKTGEQELLKPQEVIEKLQ 473


>gi|192359600|ref|YP_001983012.1| seryl-tRNA synthetase [Cellvibrio japonicus Ueda107]
 gi|238692464|sp|B3PL38|SYS_CELJU RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|190685765|gb|ACE83443.1| seryl-tRNA synthetase [Cellvibrio japonicus Ueda107]
          Length = 428

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 77/207 (37%), Gaps = 12/207 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +   N+ G  E+++P + + D    +G+   + +++ +L D  D+   
Sbjct: 170 ARLHRALAQFMLDTHINQHGYEEVNIPFIVNRDSLFGTGQLPKFEEDLFKLTD--DREFY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+I+R  I     LP  F      FR E     R   G++R  +F   +  
Sbjct: 228 LIPTAEVPLTNIYRDAILEDNQLPIKFVAHSPCFRSEAGSYGRDTRGMIRQHQFEKVELV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                PE S  +   +     +I H L L    +    G IG   +     E  V +   
Sbjct: 288 WLVQ-PEKSDEALEALVAHAEKILHDLELPHRTVVLCGGDIGFSAAKTYDIEVWVPSQNK 346

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIIS 244
             ++    +  DF        F +  +
Sbjct: 347 YREISSCSNVRDFQARRMLARFRNKET 373


>gi|325288210|ref|YP_004264391.1| seryl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
 gi|324963611|gb|ADY54390.1| seryl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
          Length = 421

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 71/207 (34%), Gaps = 12/207 (5%)

Query: 41  SWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRN 100
            +  LG K   ++   + +     G  E+  P +   +    +G+   + ++  ++    
Sbjct: 164 FYKGLGAKLERSLINFMLDRHTAKGYSEIFPPFMVHRNSMFGTGQLPKFEQDAFKVE--- 220

Query: 101 DKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRP----RFGVMRSREFL 156
           +      PT E  +T+++R  I     LP         FR E         G++R  +F 
Sbjct: 221 NTEYFLIPTAEVPVTNLYRDEILEAEKLPIRHCAYSACFRAEAGAAGRDTRGIIRQHQFN 280

Query: 157 MKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGD----LSHEFIV 212
             +   F L  +  +    ++  S   I   L L    +   +G +G         E  +
Sbjct: 281 KVELVKFSLPEKSYEEL-EELTNSAETILQELELPYRVVALSTGDMGFSSAKTYDIEVWL 339

Query: 213 LADTGETQVFCSKDFMDFPIPSENTDF 239
            +     ++    +F DF     N  F
Sbjct: 340 PSFNTYREISSCSNFEDFQARRANIRF 366


>gi|294101987|ref|YP_003553845.1| seryl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
 gi|293616967|gb|ADE57121.1| seryl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
          Length = 423

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 13/203 (6%)

Query: 46  GQKALDNVNAIIREEQNRT-GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           G +    +   + +      G  E+  P + S+     +G+   + +++ +      + +
Sbjct: 169 GARLERALINFMLDLHTEHHGYKEIQPPFMVSSQTMQGTGQLPKFAEDLYKCE---GEDL 225

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T++    I     LP  +      FR E     R   G+MR  +F   + 
Sbjct: 226 WLIPTAEVPLTNLHSGEILPEEVLPLYYTAYTPCFRKEAGSYGRDVRGMMRQHQFDKVEL 285

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADT 216
                          K+  +   +  +LGL    +   +G +G   S     E  +    
Sbjct: 286 VKISKPENSYDEL-EKLTANAEEVLQKLGLPYRVITLCTGDMGFGASKTYDLEVWLPFQD 344

Query: 217 GETQVFCSKDFMDFPIPSENTDF 239
              ++    +  DF      T +
Sbjct: 345 KYREISSCSNCEDFQARRMGTRY 367


>gi|289668879|ref|ZP_06489954.1| histidyl-tRNA synthetase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 122

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D+   D    I  RL   G +       +++G QF  A   G    V+ G   ++   V 
Sbjct: 23  DETRLDDALDIARRLRIGGINTEVQMEPKKVGKQFQYAARAGIRFVVLAGDDELARGVVA 82

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +K  +   + D++ +E+ +         + +L
Sbjct: 83  VKDLVREQQFDVARDELASTLQVELEQAKAML 114


>gi|289663423|ref|ZP_06485004.1| histidyl-tRNA synthetase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 468

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D+   D    I  RL   G +       +++G QF  A   G    V+ G   ++   V 
Sbjct: 369 DETRLDDALDIARRLRIGGINTEVQMEPKKVGKQFQYAARAGIRFVVLAGDDELARGVVA 428

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +K  +   + D++ +E+ +         + +L
Sbjct: 429 VKDLVREQQFDVARDELASTLQVELEQAKAML 460


>gi|261879482|ref|ZP_06005909.1| histidine-tRNA ligase [Prevotella bergensis DSM 17361]
 gi|270333907|gb|EFA44693.1| histidine-tRNA ligase [Prevotella bergensis DSM 17361]
          Length = 455

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 4/158 (2%)

Query: 283 EVGHIFYFGTKYSLPMSATFKGADGKDHYVQMGSYGIGAMRVVAA-VIESSHDGKGIIWP 341
             G IF      +   S T  G       +       G      A  I    +   +   
Sbjct: 300 YTGAIFEVKALDTEIGSITGGGRYDNLTGIFGMPGLSGVGISFGADRIYDVLNTLDLYPK 359

Query: 342 DSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFP 401
           ++++  ++  IN    +    D C  I A+               ++  Q + AD     
Sbjct: 360 EAISATQLLFINFGEKE---TDYCLPIVAKSRAANIRTEVYPDKVKMKKQMSYADAKKIA 416

Query: 402 LQVIVGSKFVSDSKVEIKHRLTGIREDMSLEEVINYAS 439
              + G   ++  K+ +K+ +TG ++ ++ +E+I   +
Sbjct: 417 YVALAGDNEIAQGKITLKNMVTGEQKLVTADEMIAIVA 454


>gi|188991488|ref|YP_001903498.1| histidyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167733248|emb|CAP51446.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 504

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D+   D    I  RL   G +       +++G QF  A   G    V+ G   ++   V 
Sbjct: 406 DESRLDDALDIARRLRIGGINTEVQMEPKKVGKQFQYAARAGIRFVVLAGDDELARGVVA 465

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +K  +   + D++ +E+ +         + +L
Sbjct: 466 VKDLVREQQFDVARDELASTLQVELEQAKAML 497



 Score = 38.2 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 37 KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESG 84
           GI   LP  Q A   +  +IR    R G + +  P  + +D L  +SG
Sbjct: 35 PGIMELLPREQIAFQRMLDVIRRNYERFGFLPVETPVFELSDVLLTKSG 83


>gi|52627363|gb|AAU84694.1| seryl-tRNA synthetase [Prevotella intermedia]
          Length = 289

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 10/185 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   EE  ++G +E+  P L +    + +G+      +M  
Sbjct: 24  GAGFPIYIGKMARFQRALEAFFLEEARKSGYLEVQPPLLVNQASGLGTGQLPDKEGQMY- 82

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+IFR  I   + LP         FR E     +   G+ R
Sbjct: 83  --HAQADDLYLIPTAEVPVTNIFRDEILDEKELPIKRCAYSSCFRREAGSYGKDVRGLNR 140

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHE 209
             +F   +    D TP+ S  S N+M      +  +L L    +R   G +     + ++
Sbjct: 141 LHQFDKVEIVRID-TPQHSYQSLNEMLEHVENLLIKLELPYRILRLCGGDMSFTSAICYD 199

Query: 210 FIVLA 214
           F V +
Sbjct: 200 FEVWS 204


>gi|66768694|ref|YP_243456.1| histidyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|81305334|sp|Q4UU37|SYH_XANC8 RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|66574026|gb|AAY49436.1| histidyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 477

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D+   D    I  RL   G +       +++G QF  A   G    V+ G   ++   V 
Sbjct: 379 DESRLDDALDIARRLRIGGINTEVQMEPKKVGKQFQYAARAGIRFVVLAGDDELARGVVA 438

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +K  +   + D++ +E+ +         + +L
Sbjct: 439 VKDLVREQQFDVARDELASTLQVELEQAKAML 470



 Score = 38.6 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 31 MIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESG 84
          MI  +   GI   LP  Q A   +  +IR    R G + +  P  + +D L  +SG
Sbjct: 1  MIKPRTPPGIMELLPREQIAFQRMLDVIRRNYERFGFLPVETPVFELSDVLLTKSG 56


>gi|21231254|ref|NP_637171.1| histidyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|32130118|sp|Q8P9P5|SYH_XANCP RecName: Full=Histidyl-tRNA synthetase; AltName:
           Full=Histidine--tRNA ligase; Short=HisRS
 gi|21112904|gb|AAM41095.1| histidyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 477

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%)

Query: 358 DQVCRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVE 417
           D+   D    I  RL   G +       +++G QF  A   G    V+ G   ++   V 
Sbjct: 379 DESRLDDALDIARRLRIGGINTEVQMEPKKVGKQFQYAARAGIRFVVLAGDDELARGVVA 438

Query: 418 IKHRLTGIREDMSLEEVINYASHRFSNNRPVL 449
           +K  +   + D++ +E+ +         + +L
Sbjct: 439 VKDLVREQQFDVARDELASTLQVELEQAKAML 470



 Score = 38.6 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 31 MIH-QHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSAD-LWVESG 84
          MI  +   GI   LP  Q A   +  +IR    R G + +  P  + +D L  +SG
Sbjct: 1  MIKPRTPPGIMELLPREQIAFQRMLDVIRRNYERFGFLPVETPVFELSDVLLTKSG 56


>gi|270159162|ref|ZP_06187818.1| seryl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|289166007|ref|YP_003456145.1| Seryl-tRNA synthetase [Legionella longbeachae NSW150]
 gi|269987501|gb|EEZ93756.1| seryl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|288859180|emb|CBJ13112.1| putative Seryl-tRNA synthetase [Legionella longbeachae NSW150]
          Length = 428

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 74/212 (34%), Gaps = 12/212 (5%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
            +    +   + +    + G  E+ VP + +AD  + +G+   + +++ +L    D    
Sbjct: 170 ARLHRGLIQFMLDLHTQQHGYQEIYVPYIVNADSLLGTGQLPKFEEDLFKLT--GDHGYY 227

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAY 161
             PT E  +T+  R  + +  NLP  +      FR E     +   G++R  +F   +  
Sbjct: 228 LIPTAEIPVTNTVRDTLLAEENLPIRYACHSPCFRSEAGSYGKDTKGMIRQHQFEKVELV 287

Query: 162 SFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EFIVLADTG 217
                PE S  +  ++      +  RL L    +   SG +    +     E  + +   
Sbjct: 288 WI-TKPEDSYAALEQLVRHAEMVLQRLELPYRVVTLCSGDMSPSAAKTYDIEVWLPSQNT 346

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
             ++    +   F        +    +    +
Sbjct: 347 YREISSCSNMEAFQARRMKARYRHEKTREINL 378


>gi|134094256|ref|YP_001099331.1| seryl-tRNA synthetase [Herminiimonas arsenicoxydans]
 gi|166222732|sp|A4G3W7|SYS_HERAR RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|133738159|emb|CAL61204.1| serine tRNA synthetase (Serine--tRNA ligase) (SerRS) [Herminiimonas
           arsenicoxydans]
          Length = 431

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 59/165 (35%), Gaps = 10/165 (6%)

Query: 47  QKALDNVNAIIREEQ-NRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA----DRND 101
            +    +   + +      G  E   P + +AD    +G+   +  ++  +     +   
Sbjct: 169 ARLHRALAQFMLDTHTEEHGYTECYTPYIVNADSLQGTGQLPKFEADLFAVKKGGQEGEG 228

Query: 102 KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLM 157
           +A+   PT E  +T+I R  I +   LP         FR E     R   G++R  +F  
Sbjct: 229 EALYLIPTAEVPLTNIVRDEILAADALPVRMTAHSPCFRSEAGSYGRDTRGMIRQHQFDK 288

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI 202
            +        +    + ++M      I  +LGL    +   +G +
Sbjct: 289 VEMVQVVHPEKSY-EALDEMCGHAENILKKLGLPYRVITLCTGDM 332


>gi|313837763|gb|EFS75477.1| histidyl-tRNA synthetase [Propionibacterium acnes HL037PA2]
 gi|314927356|gb|EFS91187.1| histidyl-tRNA synthetase [Propionibacterium acnes HL044PA1]
 gi|314972700|gb|EFT16797.1| histidyl-tRNA synthetase [Propionibacterium acnes HL037PA3]
 gi|328907441|gb|EGG27207.1| histidine--tRNA ligase [Propionibacterium sp. P08]
          Length = 454

 Score = 60.9 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 61/433 (14%), Positives = 118/433 (27%), Gaps = 48/433 (11%)

Query: 37  KGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRL 96
            G   +LP GQ   ++V  I+ E     G   +    ++        G  D     + RL
Sbjct: 8   SGFPEFLPSGQMVENHVTRILEETFELHGFAPIHTRAVEPMRQLTRKGEIDKEVYVVDRL 67

Query: 97  ADRNDKAMIYGPTHEEVMTDIFRS-----HIKSYRNLPFTFYQIQLKFRDELRPRFGVMR 151
                 +                          +   PF  YQIQ  +R E        R
Sbjct: 68  HADPHDSRSEKDCLGLHFDLTVPFARYVLENAGHLYFPFRRYQIQKVWRGERPQEG---R 124

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNK--------MFVSYLRIFHRLGLKSIPMRAESGPIG 203
            REF   D            H              +     F  + +     +   G   
Sbjct: 125 YREFTQADIDIVGDQTLAEHHDVETPLVMLSALERLHTELGFPTVTMHVNNRKLSEGFYR 184

Query: 204 GDLSHEFIVLADTGETQVFCSKDFMDFPIPSENTDFDDII-------SLNSIVEQWTAPY 256
           G    + + +    +       D +   +  E +  DD+        S+ S  + + A  
Sbjct: 185 GLGIEDPMAVLQRVDKYDKIGPDAVRELLVDELSLSDDVAAKCVALASIQSSDDSFIAKV 244

Query: 257 ---AATSDVHNE----------KLFDSLPE---NKRVSARGIEVGHIFYFGTKYSLPMSA 300
                T+++  E           +  ++P         ARG++      + T+ +   S 
Sbjct: 245 RELGVTNEMLEEGLDSLNRVVAAVNKAVPGRMVANLKIARGLDYYTGTVYETELTGHESM 304

Query: 301 TFKGADGKDHYVQMGSYGIGAMRVVAAVIESSHDGKGIIWPDSVAPFKISLINIKAHDQV 360
               + G+   +      +     ++  +             S +    S + +  + + 
Sbjct: 305 GSVCSGGRYESLASDGKHVYPGVGISLGLTRLLAPILSRGELSSSRSVPSAVLVAVNTEE 364

Query: 361 CRDACEKIYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQ----VI-VGSKFVSDSK 415
            R   E +   L   G         ++ G Q   AD  G P      V     +      
Sbjct: 365 DRVTSEAVAQALRSRGIPCEVAPKADKFGKQIKHADRRGIPYVWFPGVEHTDRRDAD--- 421

Query: 416 VEIKHRLTGIRED 428
             +K   +G + +
Sbjct: 422 -TVKDIRSGDQVE 433


>gi|288801194|ref|ZP_06406649.1| serine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331805|gb|EFC70288.1| serine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 429

 Score = 60.9 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 12/212 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   EE  ++G +E+  P + +      +G+      +M  
Sbjct: 164 GAGFPFYIGKMARLQRALEAFFLEEARKSGYLEVQPPYVVNQASGYGTGQLPDKEGQMYH 223

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
               N   +   PT E  +T+IFR  I   ++LP         FR E     +   G+ R
Sbjct: 224 AQLDN---LYLIPTAEVPVTNIFRDVILDEKDLPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGG----DLS 207
             +F   +    D  PE S  S  +M V    +  +L L    ++   G +         
Sbjct: 281 LHQFDKVEIVRIDK-PEHSYESLKEMLVHVEGLCKKLELPYRILKLCGGDMSFTSAICFD 339

Query: 208 HEFIVLADTGETQVFCSKDFMDFPIPSENTDF 239
            E    A     +V    +F  +        +
Sbjct: 340 FEVWSAAQQRWLEVSSVSNFESYQANRLKCRY 371


>gi|89892754|ref|YP_516241.1| seryl-tRNA synthetase [Desulfitobacterium hafniense Y51]
 gi|122484260|sp|Q252J5|SYS_DESHY RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|89332202|dbj|BAE81797.1| seryl-tRNA synthetase [Desulfitobacterium hafniense Y51]
          Length = 421

 Score = 60.9 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 13/163 (7%)

Query: 18  AEIASHKLML----RTGMIHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPT 73
                 KL +    R G +         +  LG K    + + + +  +  G +E+  P 
Sbjct: 139 HYEIGEKLDILDFARAGKV--TGARFTFYKGLGAKLERALISFMLDRHSAKGYVEVLPPY 196

Query: 74  LQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFY 133
           +   +  + +G+   + ++  ++           PT E  +T+++R  I     LP    
Sbjct: 197 MVHRNSMIGTGQLPKFEEDAFKV---AGTDYFLIPTAEVPVTNMYREEILEAEQLPIHHC 253

Query: 134 QIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKH 172
                FR E     R   G++R  +F   +   F       + 
Sbjct: 254 AYSACFRAEAGSAGRDTRGLIRQHQFNKVELVKFAFPENSYEE 296


>gi|186684160|ref|YP_001867356.1| seryl-tRNA synthetase [Nostoc punctiforme PCC 73102]
 gi|238689425|sp|B2J6K8|SYS_NOSP7 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|186466612|gb|ACC82413.1| seryl-tRNA synthetase [Nostoc punctiforme PCC 73102]
          Length = 426

 Score = 60.9 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 46  GQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMI 105
           G      +   +     + G +E+S P L + +    +G+   + +E  + AD     + 
Sbjct: 175 GAALERALIQFMLTLHTQAGYLEVSPPLLVNTESLTATGQLPKFAEESFKCAD---DDLW 231

Query: 106 YGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR----FGVMRSREFLMKDAY 161
             PT E  +T+++R  I +  +LP         FR E         G++R  +F   +  
Sbjct: 232 LIPTAEVPVTNLYRGEILAAEDLPIYHCAFTPCFRREAGSYGRDMRGLIRLHQFNKVEMV 291

Query: 162 SFDLTPEGSKH 172
            F         
Sbjct: 292 KFVEPSTSFDE 302


>gi|332296462|ref|YP_004438385.1| Seryl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
 gi|332179565|gb|AEE15254.1| Seryl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
          Length = 426

 Score = 60.9 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 84/255 (32%), Gaps = 19/255 (7%)

Query: 45  LGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAM 104
           LG + +  +   + +     G +E+  P L +      +G+   +  E+ + AD      
Sbjct: 170 LGARLVRALLNFMMDMHRSDGFVELWPPYLVNEASMYGTGQLPKFRDELFKCAD---DPY 226

Query: 105 IYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDA 160
              PT E  +T+ FR  I S  +LP  F      FR E     +   G++R  +F   + 
Sbjct: 227 FLIPTAEVPVTNFFRDEILSDDSLPIRFCAYSACFRREAGSYGKDVRGIIRQHQFDKVEL 286

Query: 161 YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI----GGDLSHEFIVLADT 216
             F    +      + +     ++  +L L    +   SG +          E  +    
Sbjct: 287 VVFCRPEDSMNEL-SIITEQAQKVLKQLKLPYRVIELCSGDLGFGSAKTYDIEVYMAYSK 345

Query: 217 GETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAP-------YAATSDVHNEKLFD 269
              ++    +F DF     N  +         V              AA  + + +K   
Sbjct: 346 NYREISSCSNFTDFQARRANIRYKPKGGKTRYVHTLNGSGLAIGRTLAAIYEYYQDKDGC 405

Query: 270 SLPENKRVSARGIEV 284
            +  +  V   G+E 
Sbjct: 406 LIVPDVLVPYIGMER 420


>gi|282879624|ref|ZP_06288355.1| serine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281306572|gb|EFA98601.1| serine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 429

 Score = 60.9 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 67/185 (36%), Gaps = 10/185 (5%)

Query: 36  SKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLR 95
             G   ++    +    + A   EE  + G +E+  P + +      +G+      +M  
Sbjct: 164 GAGFPIYIGKMARFQRALEAFFLEEARKAGYLEVQPPFVVNQASGYGTGQLPDKEGQMY- 222

Query: 96  LADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMR 151
                   +   PT E  +T+IFR  I   ++LP         FR E     +   G+ R
Sbjct: 223 --HVQLDDLYLIPTAEVPVTNIFRDVILDEKDLPIKRCAYSACFRREAGSYGKDVRGLNR 280

Query: 152 SREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPI--GGDLSHE 209
             +F   +    D  PE S  S  +M      +  +L L    ++   G +     + ++
Sbjct: 281 LHQFDKVELVRIDR-PEHSYQSLQEMLNHVEGLCQKLELPYHILKLCGGDMSFTSSICYD 339

Query: 210 FIVLA 214
           F V +
Sbjct: 340 FEVWS 344


>gi|32455224|gb|AAP83326.1| histidine-tRNA synthetase putative [Salmonella enterica subsp.
           enterica serovar Enteritidis]
          Length = 87

 Score = 60.9 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 13/73 (17%)

Query: 383 DMGEQIGSQ-------------FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIREDM 429
              E  G +             FA AD  G  + +++G   V+D  V +K   +G +  +
Sbjct: 14  LRDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAV 73

Query: 430 SLEEVINYASHRF 442
           + + V  +     
Sbjct: 74  AQDSVAAHLRTLL 86


>gi|301165788|emb|CBW25360.1| histidyl-tRNA synthetase [Bacteriovorax marinus SJ]
          Length = 436

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 53/436 (12%), Positives = 113/436 (25%), Gaps = 40/436 (9%)

Query: 38  GIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLA 97
           G   + P  ++  D +   +R             P L+   L+      +   +++    
Sbjct: 10  GTRDFFPADKRVQDYIFNKMRSSAEAFAFEGYEGPMLEEVALYKAKSGEELINEQIYSFE 69

Query: 98  DRNDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPRFGVMRSREFLM 157
           DR ++ +   P     +  +     +     P  +Y I    R E   R    R RE   
Sbjct: 70  DRGNRFVAIRPEMTPTVARMVAQVHR-EIPKPIKWYSIPNLMRYEKPQRG---RLREHWQ 125

Query: 158 KDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSHEFIVLADTG 217
            +   F      S+    ++       F         +  +   +    +    +  +T 
Sbjct: 126 FNCDIFGEVGRSSEIEILQLITHLFNSFGANSEHFEILINDREIVNIVFNDLMKIDEETS 185

Query: 218 ETQVFCSKDFMDFPIPSENTDFDDIISLNSIVEQWTAPYAATSDVHNEKLFDSLPEN--- 274
                                  +   LN   E         S  + E+LF  L E    
Sbjct: 186 YKLYKIVDKAKKVKPEGLEKMISE---LNLSSEAEAIFKKYLSLQNFEELFSFLEEKGYG 242

Query: 275 ------KRVSARGIEVGHIFYFGTKYSLPMSATF-KGADGKDHYVQMGSYGIGAMRVVAA 327
                 K +     E+G   Y     ++     +  G   +       +          A
Sbjct: 243 EKSNGFKELFQITSEIGLKDYLVYDPTIVRGLDYYTGIVFEVFDKNPENRRALCGGGAYA 302

Query: 328 VIESSH------------------DGKGIIWPDSVAPFKISLINIKAHDQVCRDACEKIY 369
            +                      D                 + +            ++ 
Sbjct: 303 NLLQIFNENPVPGVGFGLGDVTLTDFLITHKLMPDLSKNEVDLYLTFQSDRAVAKNFELA 362

Query: 370 ARLSKVGCDVFWDDMGEQIGSQ--FAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
            ++ ++G      +  E I  +  F+ AD  G     I+G K + +   ++K+  T    
Sbjct: 363 NKVREMGFKSL--NSLETIKFKKVFSNADKFGARFVSILGDKELDEGFFQVKNLATKESF 420

Query: 428 DMSLEEVINYASHRFS 443
           D+   E+ +      +
Sbjct: 421 DIKFSEL-DKLRELLN 435


>gi|317484900|ref|ZP_07943789.1| seryl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
 gi|316923838|gb|EFV45035.1| seryl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
          Length = 424

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 68/219 (31%), Gaps = 15/219 (6%)

Query: 40  YSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADR 99
            SW     +    +     +  +  G  E+  P + +      +G+   + +++ ++AD 
Sbjct: 164 VSWG-WAARLERALVCFYLDFHHEQGRTEILPPLMVNRKTMQGTGQLPKFEEDLFKVAD- 221

Query: 100 NDKAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDEL----RPRFGVMRSREF 155
                   PT E  +T++    I     LP  +      FR E     +   G +R  +F
Sbjct: 222 --WEYYLIPTAEVPVTNLHADEILDEEALPKRYCSQTPCFRSEAGSAGKDTRGYIRQHQF 279

Query: 156 LMKDA-YSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH----EF 210
              +  Y              +M  S   +  RL L    +   +G +G         E 
Sbjct: 280 TKVEMVYITHPDDSF--KYLEEMRRSAETLLERLELPYRTITLCAGDMGFSACKTYDVEV 337

Query: 211 IVLADTGETQVFCSKDFMDFPIPSENTDFDDIISLNSIV 249
            +       ++    + +DF     N  F         V
Sbjct: 338 WLPGQRTYREISSCSNCVDFQARRANIRFRPKGGKPEWV 376


>gi|255030604|ref|ZP_05302555.1| histidyl-tRNA synthetase [Listeria monocytogenes LO28]
          Length = 91

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 32/73 (43%)

Query: 368 IYARLSKVGCDVFWDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSDSKVEIKHRLTGIRE 427
           +  +L + G     D +  +  +Q   A+       +I+G + +     ++K+  TG +E
Sbjct: 14  LVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQTGNYQLKNMETGEQE 73

Query: 428 DMSLEEVINYASH 440
            +S   ++   S+
Sbjct: 74  AVSETTILEKLSN 86


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.310    0.129    0.350 

Lambda     K      H
   0.267   0.0395    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,716,770,715
Number of Sequences: 14124377
Number of extensions: 265544183
Number of successful extensions: 626318
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 10601
Number of HSP's successfully gapped in prelim test: 2481
Number of HSP's that attempted gapping in prelim test: 594977
Number of HSP's gapped (non-prelim): 18612
length of query: 449
length of database: 4,842,793,630
effective HSP length: 142
effective length of query: 307
effective length of database: 2,837,132,096
effective search space: 870999553472
effective search space used: 870999553472
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 83 (36.6 bits)